BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780808|ref|YP_003065221.1| tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA [Candidatus
Liberibacter asiaticus str. psy62]
         (626 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040485|gb|ACT57281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 1286 bits (3328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR
Sbjct: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI
Sbjct: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN
Sbjct: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC
Sbjct: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL
Sbjct: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI
Sbjct: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS
Sbjct: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES
Sbjct: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG
Sbjct: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600

Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
           MTPAALNLLLIYIKKNTVKLNEIVLV
Sbjct: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626


>gi|315122031|ref|YP_004062520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495433|gb|ADR52032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 625

 Score = 1098 bits (2840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/625 (84%), Positives = 579/625 (92%), Gaps = 1/625 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YDVIVIGGGHAGCEAA+ AA++GASTALITHK STIGSMSCNPAIGGLGKGHLVR
Sbjct: 1   MLKSCYDVIVIGGGHAGCEAASAAARIGASTALITHKISTIGSMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA+GIQFR+LN+KKGPAVRGPRTQADRELYRLAMQREILSQEN+DVI
Sbjct: 61  EIDALDGLMGRVADASGIQFRILNIKKGPAVRGPRTQADRELYRLAMQREILSQENIDVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEV  FN + + ISSI+MQD +MIRCST+VLTTGTFLRG+I+IGK KIPAGRMGD PSN
Sbjct: 121 QGEVTDFNVKDDKISSILMQDGTMIRCSTLVLTTGTFLRGIIYIGKSKIPAGRMGDPPSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            LFNSFM+FDFD GRLKTGTPARLDG+TIIW+KTEKQ+AD+ L+PFSFMTDKITN+QI C
Sbjct: 181 CLFNSFMQFDFDMGRLKTGTPARLDGRTIIWEKTEKQYADKNLVPFSFMTDKITNKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRTN ETHRII ENIKHS+IYSGDIKS GPRYCPSIEDKI+RFGERNGHQ+FLEPEGL
Sbjct: 241 GITRTNFETHRIITENIKHSSIYSGDIKSRGPRYCPSIEDKIIRFGERNGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T VVYPNGISTALPEEIQHQFIRTIPGLEKV II PGYAIEYDY+NP+EL+PTLETKKI
Sbjct: 301 CTHVVYPNGISTALPEEIQHQFIRTIPGLEKVEIISPGYAIEYDYVNPEELYPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLFLAGQINGTTGYEEAAAQGLVAGINSARKS  LDC+CFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 TGLFLAGQINGTTGYEEAAAQGLVAGINSARKSKGLDCVCFSRTDSYIGVMIDDLTSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           +EPYRMFTSRAEYR+SLR +NADNRLTPIGM+LGCIG+ R++RF  YIQEYN LR LLKS
Sbjct: 421 VEPYRMFTSRAEYRLSLRTENADNRLTPIGMELGCIGKERRERFKNYIQEYNLLRDLLKS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +++TSKN++STSI  KQDGK R AY+ LSYPDFSI+NLFSI PDA KFSS+V+ERL+IES
Sbjct: 481 VIITSKNIASTSIPLKQDGKIRNAYDLLSYPDFSIKNLFSIYPDACKFSSIVLERLKIES 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SY  YT RQM+EAKEIKFEEKRLIP DFDYSSLPALSNELKEKLS +KPFNLLQASKIEG
Sbjct: 541 SYDVYTKRQMVEAKEIKFEEKRLIPNDFDYSSLPALSNELKEKLSCVKPFNLLQASKIEG 600

Query: 601 MTPAALNLLLIYIKKNT-VKLNEIV 624
           MTPAALNLLLIYIKKNT +K N++V
Sbjct: 601 MTPAALNLLLIYIKKNTSIKENKMV 625


>gi|15967090|ref|NP_387443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium meliloti 1021]
 gi|307302552|ref|ZP_07582309.1| glucose inhibited division protein A [Sinorhizobium meliloti
           BL225C]
 gi|21263672|sp|Q92KW2|MNMG_RHIME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15076363|emb|CAC47916.1| Probable glucose inhibited division protein A [Sinorhizobium
           meliloti 1021]
 gi|306903222|gb|EFN33812.1| glucose inhibited division protein A [Sinorhizobium meliloti
           BL225C]
          Length = 623

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/618 (61%), Positives = 473/618 (76%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA+ +A+LGA T LITHK  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 4   YDVIVIGGGHAGCEAASASARLGARTVLITHKMDTIGVMSCNPAIGGLGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI   ENL VI+G+  
Sbjct: 64  DGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREISGIENLSVIEGDAF 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE  ++    M+D  + R + VVLTTGTFL+G+IHIG+ KIPAGR+G+ PS  L  +
Sbjct: 124 DLLTEDGVVCGTAMKDGRIFRAAAVVLTTGTFLKGLIHIGQRKIPAGRVGEEPSLGLSGT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TRT
Sbjct: 184 LRRFGLQLGRLKTGTPARLDGRTIDWDRVGRQGPDENPVPFSFMTDAIINRQIDCGVTRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D V
Sbjct: 244 TDATHKIIADNIHQSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDTV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL  +L  +K+ GLFL
Sbjct: 304 YPNGISTSLPEDVQDAFIRTIPGLEQVKILQPGYAIEYDHVDPRELELSLGVRKMPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGLVAG+N+A +S       FSRTDSYIGVMIDDLTS+G+ EPYR
Sbjct: 364 AGQINGTTGYEEAGAQGLVAGLNAALRSIGRAPHFFSRTDSYIGVMIDDLTSRGITEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R++RF  +   Y   R+LL+SL +T 
Sbjct: 424 MFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETGRTLLQSLSVTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG+ RTA++ LSYPD SI  L  + P+ +   + V+E L+I+++YA Y
Sbjct: 484 SEGKRFGLKLNQDGQRRTAFDILSYPDQSIAALKPLWPELQTIPAGVVEALEIDAAYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E   IP DFDY  LP LSNELK+KL+  KP NL QA K++G+TPAA
Sbjct: 544 MERQATDIAGVRRDENTSIPDDFDYEVLPGLSNELKQKLAQHKPRNLAQAMKVDGVTPAA 603

Query: 606 LNLLLIYIKKNTVKLNEI 623
           ++L+L ++++   +   +
Sbjct: 604 ISLILSWLRRQVRQAQRV 621


>gi|150398396|ref|YP_001328863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium medicae WSM419]
 gi|166200617|sp|A6UEE8|MNMG_SINMW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150029911|gb|ABR62028.1| glucose inhibited division protein A [Sinorhizobium medicae WSM419]
          Length = 623

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/610 (62%), Positives = 474/610 (77%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA +A+LGA T LITHK  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 4   YDVIVIGGGHAGCEAAAASARLGARTLLITHKKDTIGVMSCNPAIGGLGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI S ENLDV +G+  
Sbjct: 64  DGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREIASIENLDVAEGDAF 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE  ++   VM+D    R ++VVLTTGTFLRG+IHIG  K+PAGR+G+ PS  L  +
Sbjct: 124 DLQTEDGVVCGAVMKDGRSFRAASVVLTTGTFLRGLIHIGDRKMPAGRVGEQPSVGLSET 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F    GRLKTGTPARLDG+TI W +  +Q  DE  +PFSFMTD I NRQI+CG+TRT
Sbjct: 184 LARFGLQLGRLKTGTPARLDGRTIDWGRVGRQGPDENPVPFSFMTDAIVNRQIDCGVTRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D V
Sbjct: 244 TDATHKIIADNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDTV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL P+L  +++ GLFL
Sbjct: 304 YPNGISTSLPEDVQDAFIRTIPGLEQVTILQPGYAIEYDHVDPRELEPSLGVRRMPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGLVAG+N+A ++ +     FSRTDSYIGVMIDDLTS+G+ EPYR
Sbjct: 364 AGQINGTTGYEEAGAQGLVAGLNAALRAAERAPFFFSRTDSYIGVMIDDLTSRGIAEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLTP+G++LGC+G  R  RF ++   Y   R+LL+SL +T 
Sbjct: 424 MFTSRAEYRLSLRADNADMRLTPVGIELGCVGNARLTRFQQWKSAYEAGRTLLQSLSVTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG+ RTA+E LSYPD SI+ L  + P+ +  ++ V   L+I+++YA Y
Sbjct: 484 NEGKRFGLKLNQDGQRRTAFEILSYPDQSIEGLRPLWPELQAIATDVAAALEIDAAYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE   IP+ FDY SLP LSNELK+KL+  KP NL QA K++G+TPAA
Sbjct: 544 MERQAADIIGVQREESTAIPEAFDYESLPGLSNELKQKLAQQKPRNLSQAMKVDGVTPAA 603

Query: 606 LNLLLIYIKK 615
           ++L+L ++++
Sbjct: 604 ISLILSWLRR 613


>gi|307316117|ref|ZP_07595561.1| glucose inhibited division protein A [Sinorhizobium meliloti AK83]
 gi|306897957|gb|EFN28699.1| glucose inhibited division protein A [Sinorhizobium meliloti AK83]
          Length = 623

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/618 (61%), Positives = 473/618 (76%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA+ +A+LGA T L+THK  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 4   YDVIVIGGGHAGCEAASASARLGARTVLMTHKMDTIGVMSCNPAIGGLGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI   ENL VI+G+  
Sbjct: 64  DGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREISGIENLSVIEGDAF 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE  ++    M+D  + R + VVLTTGTFL+G+IHIG+ KIPAGR+G+ PS  L  +
Sbjct: 124 DLLTEDGVVCGTAMKDGRIFRAAAVVLTTGTFLKGLIHIGQRKIPAGRVGEEPSLGLSGT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TRT
Sbjct: 184 LRRFGLQLGRLKTGTPARLDGRTIDWDRVGRQGPDENPVPFSFMTDAIINRQIDCGVTRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D V
Sbjct: 244 TDATHKIIADNIHQSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDTV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL  +L  +K+ GLFL
Sbjct: 304 YPNGISTSLPEDVQDAFIRTIPGLEQVKILQPGYAIEYDHVDPRELELSLGVRKMPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGLVAG+N+A +S       FSRTDSYIGVMIDDLTS+G+ EPYR
Sbjct: 364 AGQINGTTGYEEAGAQGLVAGLNAALRSIGRTPHFFSRTDSYIGVMIDDLTSRGITEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R++RF  +   Y   R+LL+SL +T 
Sbjct: 424 MFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETGRTLLQSLSVTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG+ RTA++ LSYPD SI  L  + P+ +   + V+E L+I+++YA Y
Sbjct: 484 SEGKRFGLKLNQDGQRRTAFDILSYPDQSIAALKPLWPELQTIPAGVVEALEIDAAYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E   IP DFDY  LP LSNELK+KL+  KP NL QA K++G+TPAA
Sbjct: 544 MERQATDIAGVRRDENTSIPDDFDYEVLPGLSNELKQKLAQHKPRNLAQAMKVDGVTPAA 603

Query: 606 LNLLLIYIKKNTVKLNEI 623
           ++L+L ++++   +   +
Sbjct: 604 ISLILSWLRRQVRQAQRV 621


>gi|227823855|ref|YP_002827828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium fredii NGR234]
 gi|227342857|gb|ACP27075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium fredii NGR234]
          Length = 627

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/612 (62%), Positives = 473/612 (77%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA+ AA+LGA TALITHK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   SYDVIVIGGGHAGCEAASAAARLGARTALITHKKETIGVMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LYR AMQREI + ENL VI+G+ 
Sbjct: 63  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRRLYREAMQREIDAIENLLVIEGDA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   ++ ++M++  + R + VVLTTGTFL+G+IHIG  KIPAGR+G+ PS  L  
Sbjct: 123 FDLLTEGETVAGVIMKNGQVFRAAAVVLTTGTFLKGLIHIGDRKIPAGRVGEEPSVGLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TR
Sbjct: 183 TLARFGLKLGRLKTGTPARLDGRTIHWDRVGRQGPDEEPVPFSFMTDTIVNRQIDCGVTR 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH++I +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 243 TTDATHKLIADNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q  FIRT+PGLE V+I++PGYAIEYD+++P+EL  +L  +K  GL+
Sbjct: 303 IYPNGISTSLPEEVQEAFIRTVPGLESVSILQPGYAIEYDHVDPRELQLSLAVRKSPGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+A  +   +   FSRTDSYIGVMIDDLTS+G+ EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLVAGLNAALAAMGREPFVFSRTDSYIGVMIDDLTSRGITEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP G++LGC+GE R+ RF  + + Y+   +LLKSL +T
Sbjct: 423 RMFTSRAEYRLSLRADNADMRLTPTGIELGCVGEARRTRFGSWKRAYDDGHTLLKSLSIT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +   +DG+ RTA++ L+YPD +I+ L  + P        V E LQI+++YA 
Sbjct: 483 PNEGARYGLKLNRDGQRRTAFDLLAYPDQTIEGLRPLWPQLDAIDPRVSEALQIDAAYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   I+ EE   IP DFDYS LP LSNELK+KL+  +P NL QA K++GMTPA
Sbjct: 543 YMERQAADIAGIRREESAAIPDDFDYSVLPGLSNELKQKLAQQRPRNLAQAMKVDGMTPA 602

Query: 605 ALNLLLIYIKKN 616
           A++LLL ++++ 
Sbjct: 603 AVSLLLSWLRRQ 614


>gi|222087928|ref|YP_002546466.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
 gi|221725376|gb|ACM28532.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
          Length = 626

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/618 (62%), Positives = 480/618 (77%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YDVIV+GGGHAG EAAA AA+LGA TAL+THK  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MLETIYDVIVVGGGHAGSEAAAAAARLGAKTALVTHKRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA GIQFR+LN KKGPAVRGPRTQADR+LYRLAMQ EI + ENLD+I
Sbjct: 61  EIDALDGLMGRVADAGGIQFRMLNRKKGPAVRGPRTQADRKLYRLAMQAEIGAIENLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          +S++V+++   IRC  VVLTTGTFLRG+IHIG  KIPAGR+G+ PS 
Sbjct: 121 EGDAFDLTISDGRVSAVVLKNGRTIRCGAVVLTTGTFLRGLIHIGDRKIPAGRVGEEPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  ++     RLKTGTPARLDG TI W+   +Q AD+  +PFSFMTD+I N QIEC
Sbjct: 181 GLSGTLERYGLALARLKTGTPARLDGSTIDWNAVGRQGADDEPVPFSFMTDRIVNPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   TH+II +N+  SA+YSG I+  GPRYCPSIEDKIV+FGER+GHQIFLEPEGL
Sbjct: 241 GVTRTTPATHKIIADNLMRSAMYSGQIEGVGPRYCPSIEDKIVKFGERDGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPEE+Q  FIRTIPGLE+V I++ GYAIEYD+++P+EL P+LE  KI
Sbjct: 301 DDTTVYPNGISTSLPEEVQDAFIRTIPGLERVRILQCGYAIEYDHVDPRELKPSLEVMKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEA AQGL+AG+N+AR S   D I  SRT+SYIGVMIDDLTS+GV
Sbjct: 361 PGLFLAGQINGTTGYEEAGAQGLIAGLNAARLSGGGDAIQLSRTESYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP+G+ +GC+G  R  RF  Y+++  + R+ LK+
Sbjct: 421 AEPYRMFTSRAEYRLSLRADNADVRLTPLGLTIGCVGSARADRFGDYMEKLEWARTQLKA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L +T        +   +DG+ RTAY+ LSYP+ SI +L  + P+ R     V+E ++IE+
Sbjct: 481 LSVTPSEAEKAGLHLNKDGQRRTAYDLLSYPEHSIDSLSGLWPELRSIDRRVVEAVEIEA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +  +++ EE+RLIP+DFD+S L  LSNELK+KL+  +P N+ QAS+I+G
Sbjct: 541 AYAVYMDRQTSDIVQVRREEERLIPQDFDFSILSGLSNELKQKLAKAQPKNIAQASRIDG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAA++LLL +++K TV
Sbjct: 601 MTPAAISLLLAHLRKLTV 618


>gi|209551501|ref|YP_002283418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537257|gb|ACI57192.1| glucose inhibited division protein A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 625

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/616 (60%), Positives = 463/616 (75%), Gaps = 1/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDKVYDVIVIGGGHAGSEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNKKKGAAVRGPRTQADRKLYRLAMLAAIEATAGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          ++ ++MQD  ++  + VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLKVVDGRVAGVIMQDGRVLGAAAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L PFS MTD IT  QIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQAVGRQGADEELTPFSLMTDAITTPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q +FI+TIPGLE+  II+PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQAEFIKTIPGLERARIIQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AGIN+A +S+  D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 KGLFLAGQINGTTGYEEAAAQGLAAGINAALRSSDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+ M+LGC+   R++RF +Y  E    R LL+S
Sbjct: 421 TEPYRMFTSRAEYRLMLRADNADMRLTPLAMQLGCVSGERERRFTRYQTEIEAGRVLLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIE 539
           L +T        ++   DG+ RTAY+ LSYP++    L  + PD     +  V E L+IE
Sbjct: 481 LAVTPNEARRVGLNINLDGQRRTAYDLLSYPNYDFDVLRKVWPDELGAVAGKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E R IP DFDY++L  LSNELK KL   +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEDRHIPADFDYTALSGLSNELKAKLGAARPFNIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKK 615
           GMTPAA+ LLL+++++
Sbjct: 601 GMTPAAVALLLVHLRR 616


>gi|222150245|ref|YP_002551202.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium vitis S4]
 gi|254811504|sp|B9JV52|MNMG_AGRVS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|221737227|gb|ACM38190.1| glucose inhibited division protein A [Agrobacterium vitis S4]
          Length = 621

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/616 (60%), Positives = 466/616 (75%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIVIGGGHAG EAA  +A+LGA T L+TH+  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 3   RRFDVIVIGGGHAGSEAAYASARLGARTCLVTHRRDTIGVMSCNPAIGGLGKGHLVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR ADAAGIQFR+LN KKGPAVRGPRTQADR+LYR A+Q  + +   L++I+G+
Sbjct: 63  ALGGLMGRCADAAGIQFRLLNRKKGPAVRGPRTQADRKLYRQAVQNVLFNHPQLEIIEGD 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V   N E   +  +++ D   +  ++V+LT+GTFLRG+IHIG+ KIPAGR+G++PS  L 
Sbjct: 123 VFDLNVENGTVKGVILADGQSLPSASVILTSGTFLRGLIHIGQTKIPAGRVGEAPSLGLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +     GRLKTGTPARLDG+TI W + E Q ADE+ +PFSFMTD+ITNRQIECGIT
Sbjct: 183 ATLGRLGLRLGRLKTGTPARLDGRTIDWAQLEMQAADEQPVPFSFMTDRITNRQIECGIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH II +NI  SA+YSG I+  GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+  
Sbjct: 243 RTTAATHTIIRDNIHLSAMYSGQIEGVGPRYCPSIEDKISRFGDRDGHQVFLEPEGLDDH 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LPE +Q +F+RT+PGLE V I++  YAIEYD+I+P+EL  +LE K++SGL
Sbjct: 303 TVYPNGISTSLPESVQKEFMRTLPGLENVTILQSAYAIEYDHIDPRELSASLELKRLSGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+AR +   D + FSR  SYIGVMIDDL S GV EP
Sbjct: 363 YLAGQINGTTGYEEAAAQGLVAGLNAARTAGGQDVVHFSRAQSYIGVMIDDLISHGVTEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGCI   ++KRF  Y  + +   ++L++  L
Sbjct: 423 YRMFTSRAEFRLSLRADNADMRLTPIGIALGCIASDQEKRFKDYRHQIDDTINMLETRKL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    ++  I   QDG+ RTA E L+YPD SI +L  + P+     S V E ++I ++YA
Sbjct: 483 TPNEAAAVGIPVNQDGRRRTALELLAYPDISIADLSRLWPELDALDSKVAEAVEIHATYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    K +E RLIPKDFDY+SL  LSNELK+KL   +P NL QA+K+EGMTP
Sbjct: 543 VYMDRQNADIAATKRDEDRLIPKDFDYASLSGLSNELKQKLEKTRPENLSQAAKVEGMTP 602

Query: 604 AALNLLLIYIKKNTVK 619
           AA++LL+ ++ K  ++
Sbjct: 603 AAISLLIAFLNKGMLR 618


>gi|190893978|ref|YP_001980520.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
 gi|190699257|gb|ACE93342.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
          Length = 625

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/618 (62%), Positives = 472/618 (76%), Gaps = 1/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MIGNVYDVIVIGGGHAGSEAASAAARLGARTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGR+ADAAGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRIADAAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ +VM+D  +++   VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 121 EGDAFDLDVVDNRVAGVVMKDGRLLKAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGK+I W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKSIDWQSVGRQGADEDLVPFSFMTDSITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIIDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FIRTIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIRTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL AG+N+A +S   D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSTDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+G  R++RF  Y  E +  RSLL S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADVRLTPLGMRLGCVGSAREQRFTAYQVEVDAGRSLLMS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIE 539
           L LT        +    DG+ RTAY+ LSYPD++   L  + PDA       V E L+IE
Sbjct: 481 LTLTPNEARRAGLHINLDGQRRTAYDLLSYPDYNFAALRQVWPDALAAVRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFDYSALSGLSNELKAKLSTARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAA+ LLL+++++ +
Sbjct: 601 GMTPAAIALLLVHLRRQS 618


>gi|327191201|gb|EGE58244.1| glucose inhibited division protein A [Rhizobium etli CNPAF512]
          Length = 625

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/618 (61%), Positives = 470/618 (76%), Gaps = 1/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MIGNVYDVIVIGGGHAGSEAASAAARLGARTALVTHRRETIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGR+ADAAGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRIADAAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ ++M+D  ++    VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 121 EGDAFDLDVVDNRVAGVIMKDGRLLSAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGK+I W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKSIDWQSVGRQGADEHLVPFSFMTDSITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIIDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIKTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL AG+N+A +S   D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSTDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+G  R++RF  Y  E +  RSLL S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADVRLTPLGMRLGCVGSAREQRFTAYQVEVDAGRSLLMS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIE 539
           L LT        +    DG+ RTAY+ LSYPD+    L  + PDA       V E L+IE
Sbjct: 481 LTLTPNEARRAGLHINLDGQRRTAYDLLSYPDYDFAALRQVWPDALAAVRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFDYSALSGLSNELKAKLSTARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAA+ LLL+++++ +
Sbjct: 601 GMTPAAIALLLVHLRRQS 618


>gi|307943443|ref|ZP_07658787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseibium sp. TrichSKD4]
 gi|307773073|gb|EFO32290.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseibium sp. TrichSKD4]
          Length = 625

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/614 (59%), Positives = 463/614 (75%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ S+DVIVIGGGHAGCEAAA +A++GA TAL+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 4   VDLSFDVIVIGGGHAGCEAAAASARVGAKTALVTHKFETIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYR AMQ EI + ENL V++
Sbjct: 64  IDALDGLMGRVADKAGIQFRMLNRRKGPAVRGPRTQADRKLYRDAMQAEIAALENLSVVE 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+   F  ++  +  +++ D   +   +VVLT+GTFLRG+IHIG  KIPAGR G++P+  
Sbjct: 124 GQANRFLFDEGKVVGLLLSDGRKVEAKSVVLTSGTFLRGLIHIGDQKIPAGRSGEAPALG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  FD GRLKTGTPARLDG+TI W+K + Q ADE  +PFS +T+KIT  QIEC 
Sbjct: 184 LSESLEEIGFDLGRLKTGTPARLDGRTIKWEKLDAQLADENPVPFSTLTEKITTPQIECH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  ETHRII EN+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 244 ITRTTPETHRIIRENLSRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE+ Q  F+RTIPGLE+V + +PGYAIEYD+++P+EL PTLE +  S
Sbjct: 304 DHTVYPNGISTSLPEDAQLAFLRTIPGLEEVEVFQPGYAIEYDHVDPRELNPTLEARICS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N+  K+  ++     R++ YIGVMIDDL ++G+ 
Sbjct: 364 GLFLAGQINGTTGYEEAGAQGLVAGLNAGLKAQGMEPFTVDRSEGYIGVMIDDLVTRGIT 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+GMK+GCI E R+  F   ++    +  LLK L
Sbjct: 424 EPYRMFTSRAEYRLSLRADNADQRLTPLGMKIGCISEARRVAFETKMKSLTEVADLLKRL 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T        +   QDG  R+A++ LSYPD S + L S+ P+       ++E++  ++ 
Sbjct: 484 TITPAEAQRKGLPVNQDGIRRSAFDLLSYPDMSFEQLASVWPELEDIDPSIVEQVSSDAL 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   +K +E   IP DFD+++L  LSNE+K+KL  ++P  L QAS+++G+
Sbjct: 544 YAVYLERQAADIAALKKDEALAIPADFDFNALTGLSNEVKQKLEAVRPATLGQASRMDGI 603

Query: 602 TPAALNLLLIYIKK 615
           TPAAL L+L ++K+
Sbjct: 604 TPAALTLILSHLKR 617


>gi|325294201|ref|YP_004280065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium sp. H13-3]
 gi|325062054|gb|ADY65745.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium sp. H13-3]
          Length = 627

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/621 (62%), Positives = 477/621 (76%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAG EAAA AA+ GA TAL+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHQSFDVIVIGGGHAGSEAAAAAARHGAKTALVTHKRETIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFR+LN KKGPAVRGPRTQADR LYR AMQREI + ENL +I+
Sbjct: 61  IDALDGLMGRVADAAGIQFRMLNRKKGPAVRGPRTQADRRLYREAMQREINAIENLSIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+        + + +++M + S I C  VVLT+GTFLRG+IHIG  KIPAGR+G+ PS  
Sbjct: 121 GDAFDIEMADDKVCAVIMANGSRIPCGAVVLTSGTFLRGLIHIGSEKIPAGRVGEKPSLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +     GRLKTGTPARLDG++I W+  ++Q ADE  +PFSFMTD+I N QIECG
Sbjct: 181 LSETLGRLGLAMGRLKTGTPARLDGRSIDWEGVDRQAADEDPVPFSFMTDRIVNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRT    HRII +NI  SA+YSG I+  GPRYCPSIEDKI RFGER+GHQIFLEPEGL+
Sbjct: 241 VTRTTPAGHRIIQDNIHLSAMYSGQIEGVGPRYCPSIEDKITRFGERDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q QFIRTIPGLE+VNII+PGYAIEYDY++P+EL P+LE +KI 
Sbjct: 301 DHTIYPNGISTSLPASVQEQFIRTIPGLEQVNIIQPGYAIEYDYVDPRELKPSLECRKIP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N++  +   D I FSRT+SYIGVMIDDLTSKGV 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLVAGLNASLYAGNADPIHFSRTESYIGVMIDDLTSKGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTPIG   G IG  RQKRFA +I + +  R L+KS+
Sbjct: 421 EPYRMFTSRAEYRLSLRVDNADLRLTPIGQMAGIIGHDRQKRFADFISDMDRGRELMKSI 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++    +   +   QDG+ R+ YE L+YPD +++ L +  P+ R  ++ V E L+IE+S
Sbjct: 481 SISPSQAAKQGLKLNQDGQRRSVYEMLAYPDITMETLTTHWPELRALNTKVAEVLEIEAS 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +  +IK +E R IP DFD+ SL  LSNELK+KL   +P N+ QA++++GM
Sbjct: 541 YAVYMQRQNADIVDIKRDEDRKIPNDFDFQSLSGLSNELKQKLEKARPENIAQAARVDGM 600

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           TPAA++LLL  ++K +   +E
Sbjct: 601 TPAAISLLLALLRKGSASGSE 621


>gi|15890076|ref|NP_355757.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium tumefaciens str. C58]
 gi|22095724|sp|Q8UBM0|MNMG_AGRT5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15158061|gb|AAK88542.1| glucose inhibited division protein A [Agrobacterium tumefaciens
           str. C58]
          Length = 627

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/621 (60%), Positives = 478/621 (76%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DV+VIGGGHAG EAAA AA+ GA TAL+THK   IG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHQSFDVVVIGGGHAGSEAAAAAARHGAKTALVTHKREAIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFR+LN KKGPAVRGPRTQADR LYR AMQREI + +NL +I+
Sbjct: 61  IDALDGLMGRVADAAGIQFRMLNRKKGPAVRGPRTQADRRLYREAMQREIDAMDNLTIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+      + + +++++M++ S I C  VVLT+GTFLRG+IHIG  KIPAGR+G+ PS  
Sbjct: 121 GDAFDIEMDNDRVAAVIMKNGSRIPCGAVVLTSGTFLRGLIHIGSEKIPAGRVGEMPSLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +     GRLKTGTPARLDG+TI W+  ++Q ADE  +PFSFMTD I N QIECG
Sbjct: 181 LSDTLSRLGLAMGRLKTGTPARLDGRTIDWNAVDRQAADEDPVPFSFMTDHILNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRT   +H+II +NI  SA+YSG I+  GPRYCPSIEDKI RFGER+GHQIFLEPEGL+
Sbjct: 241 VTRTTPASHKIIQDNIHLSAMYSGQIEGVGPRYCPSIEDKITRFGERDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q QFIRTIPGLE+V I++PGYAIEYDY++P+EL P+LE +KI 
Sbjct: 301 DYTIYPNGISTSLPAFVQEQFIRTIPGLEQVTILQPGYAIEYDYVDPRELKPSLECRKIP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N++  +   D + FSRT+SYIGVMIDDLTSKGV 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLVAGLNASLYAGSADPLHFSRTESYIGVMIDDLTSKGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+  K G +G  RQ+RF  ++ + + +R+L+K L
Sbjct: 421 EPYRMFTSRAEYRLSLRVDNADLRLTPVAQKAGILGRERQQRFTDFLSDLDSVRALMKEL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++    +   +   QDG+ R+ YE L+YPD ++Q L    P+  + ++ V E LQIE+S
Sbjct: 481 SISPSQAAKQGLKLNQDGQRRSVYELLAYPDMTLQALAEHWPELNRLNAKVAEVLQIEAS 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +  +IK +E R IP DFD+ SL  LSNELK+KL   +P N+ QA++++GM
Sbjct: 541 YAVYMQRQSADIVDIKRDEDRKIPDDFDFQSLSGLSNELKQKLEKARPENIAQAARVDGM 600

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           TPAA++LLL  ++K T   +E
Sbjct: 601 TPAAISLLLALLRKGTATRSE 621


>gi|86359700|ref|YP_471592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli CFN 42]
 gi|123510386|sp|Q2K2S1|MNMG_RHIEC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86283802|gb|ABC92865.1| glucose inhibited division protein A [Rhizobium etli CFN 42]
          Length = 632

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/617 (60%), Positives = 463/617 (75%), Gaps = 1/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  Y+VIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTNSGYNVIVIGGGHAGTEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +     ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLDVLDGRVAGVIMKDGRRLQAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT RQ+EC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEELVPFSFMTDSITTRQVEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIKHSA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIKHSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP EIQ  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEIQAAFIKTIPGLESARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A  S+  +   FSRT SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALLSSDSEPFHFSRTSSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+ M LGC+G  R +RF  Y  E +  R+ L +
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADMRLTPLAMALGCVGAERAERFTAYQAEIDAGRAQLMA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIE 539
           L +T        ++   DG+ R+AY+FLSYP +    L  + P+   +    V E L+IE
Sbjct: 481 LTVTPNEARRAGLNINLDGQRRSAYDFLSYPTYDFAALRKVWPEELGRLRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFNYDALSGLSNELKAKLSAARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKN 616
           GMTPAA+ LLL+++++ 
Sbjct: 601 GMTPAAVALLLVHLRRQ 617


>gi|116254462|ref|YP_770300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|205375709|sp|Q1MA19|MNMG_RHIL3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115259110|emb|CAK10221.1| putative glucose inhibited division protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 625

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/616 (60%), Positives = 465/616 (75%), Gaps = 1/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIVIGGGHAG EAA+ AA+LGA TALITH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDNVFDVIVIGGGHAGSEAASAAARLGAKTALITHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +  +LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNKKKGAAVRGPRTQADRKLYRLAMLAAIEATPDLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +     ++ ++M+D+  ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLDVVDGCVAGVIMKDDRTLKAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE LIPFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSIGRQGADEELIPFSFMTDTITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIKTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A +S+  D   FSRT SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSSDSDPFHFSRTSSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP+ M++GC+ + R +RF  Y  E    R+LL+S
Sbjct: 421 TEPYRMFTSRAEYRLSLRADNADMRLTPLAMRVGCVSDARVRRFTSYQAEIETCRALLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
           L +T        ++   DG+ RTAY+ LSYP++S   L  + P+        V E L+IE
Sbjct: 481 LAVTPNEARRAGLNINLDGQRRTAYDLLSYPNYSFAALSDVWPEKLGMIGPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KL   +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQASAIADQQRDEERQIPLDFNYDALAGLSNELKVKLGTARPFNIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKK 615
           GMTPAA+ LLL+++++
Sbjct: 601 GMTPAAIALLLVHLRR 616


>gi|254505046|ref|ZP_05117197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Labrenzia alexandrii DFL-11]
 gi|222441117|gb|EEE47796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Labrenzia alexandrii DFL-11]
          Length = 643

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/618 (57%), Positives = 459/618 (74%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIGGGHAGCEAAA +A++GA TAL+THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 23  SFDVVVIGGGHAGCEAAAASARMGAKTALVTHKFETIGVMSCNPAIGGLGKGHLVREIDA 82

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LYR AMQREI + ENL V++GE 
Sbjct: 83  LDGLMGRVADQGGIQFRMLNRRKGPAVRGPRAQADRKLYREAMQREIAAVENLTVVEGEA 142

Query: 125 AGF---NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   +   ++ IV+    +I C  VVLT+GTFLRG+IHIG  KIPAGR G++P+  
Sbjct: 143 EQLRFSGADARSVTGIVLASGQVIDCGAVVLTSGTFLRGLIHIGDRKIPAGRSGEAPAMG 202

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +  FD GRLKTGTPARLDG+TI WD+ E+Q  DE  IPFS +TDKI+  QI C 
Sbjct: 203 LSHSLEQIGFDLGRLKTGTPARLDGRTIHWDRLEEQPGDEEPIPFSTLTDKISIPQIPCH 262

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  ETH+II +N+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 263 ITRTTPETHQIIRDNLDRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 322

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE+ Q  F+RTIPGLE V +I+PGYAIEYD+++P+EL  TLE K+ +
Sbjct: 323 DHTVYPNGISTSLPEDAQIAFLRTIPGLENVEVIQPGYAIEYDHVDPRELRATLEAKRCA 382

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A K          R+  YIGVMIDDL ++G+ 
Sbjct: 383 GLYLAGQINGTTGYEEAGAQGLVAGLNAALKVADKAPFIVDRSQGYIGVMIDDLITRGIT 442

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+G+++GC+ + R+  +   +++    R LL+SL
Sbjct: 443 EPYRMFTSRAEYRLSLRADNADQRLTPLGIEIGCVSDDRRAAYEAKMEKILAARDLLQSL 502

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   QDG  R+A++ LSYP  +   L  + P+       V+E++  ++ 
Sbjct: 503 TVTPNEATKKGLPVNQDGVRRSAFDLLSYPKVTFDGLQMVWPELGHMDPAVVEQVTTDAL 562

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + + +K +E   IP DFDY ++  LSNE+K+KL+ ++P  L QAS+++GM
Sbjct: 563 YAVYLERQTADIEALKRDEALGIPDDFDYEAIVGLSNEVKQKLADIRPATLGQASRMDGM 622

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAAL L+L ++K+ + +
Sbjct: 623 TPAALTLILSHLKRQSQR 640


>gi|306842824|ref|ZP_07475464.1| glucose-inhibited division protein A [Brucella sp. BO2]
 gi|306287018|gb|EFM58529.1| glucose-inhibited division protein A [Brucella sp. BO2]
          Length = 642

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/611 (58%), Positives = 457/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 14  AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 74  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 134 ADLVCDGERISGVTLGDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  IPFS MTD+IT  QIECGITR
Sbjct: 194 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPIPFSLMTDRITTPQIECGITR 253

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 254 TTPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 313

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 314 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 373

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 374 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 433

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 434 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSIT 493

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                +  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 494 PNLAGNYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 553

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 554 YMERQQSDIAVMEREERLLIPLGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 613

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 614 AVALLIAQIRK 624


>gi|114705861|ref|ZP_01438764.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
 gi|114538707|gb|EAU41828.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
          Length = 631

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/616 (56%), Positives = 452/616 (73%), Gaps = 1/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S DV+VIGGGHAGCEAA+ +A+ GA+T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDA
Sbjct: 13  SADVVVIGGGHAGCEAASASARFGATTVLVTHRFDTIGAMSCNPAIGGIGKGHLVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG VADAAGIQFR+LN  KGPAV GPRTQADR+LY  AMQ +I +  NL V++G+V
Sbjct: 73  LGGLMGEVADAAGIQFRMLNRSKGPAVHGPRTQADRKLYGEAMQAKIAAHANLSVVEGDV 132

Query: 125 AGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              + T +  +  ++  D   + C  VVLTTGTFL G+IHIG  +IPAGRMG+ PS  L 
Sbjct: 133 FDLDLTPEGEVQGVIFADGRRLACGAVVLTTGTFLSGLIHIGTQRIPAGRMGEDPSVGLS 192

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +     GRLKTGTPARLDG+TI W   E Q AD+  +PFS++TD+ITNRQIECG+T
Sbjct: 193 GTLKRLGLSLGRLKTGTPARLDGRTIDWASIESQAADDEPVPFSYLTDRITNRQIECGVT 252

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +THRII +NI+ SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQ+FLEPEGL+  
Sbjct: 253 RTTPDTHRIIRDNIRKSALYSGQIEGVGPRYCPSIEDKIVKFGDRDGHQVFLEPEGLDDH 312

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST++PE++Q +F+R+IPGLE V I+R GYAIEYD+I+P+EL   L  +K  GL
Sbjct: 313 TVYPNGLSTSMPEDVQLEFLRSIPGLENVEILRAGYAIEYDHIDPRELDRHLAVRKARGL 372

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGL+AG+N+A  + K   +   R D+Y+GVM+DDLT  GV EP
Sbjct: 373 YLAGQINGTTGYEEAAAQGLLAGLNAACLAGKAAPVAVGRADAYLGVMVDDLTRTGVTEP 432

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ ++LG  G  R +RF K  +     R+LL+   L
Sbjct: 433 YRMFTSRAEFRLSLRADNADRRLTPLAVELGIAGAERTERFLKSEEGLAKGRALLEERTL 492

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    +   +S  +DG+ R+A++ LS     +  L +I P+  K +    ER +IE++Y 
Sbjct: 493 TPNEAAKHGLSLNKDGRRRSAWQLLSQAGIDLGRLSAIWPELGKIAGKTRERTEIEAAYD 552

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E R+IP + D  SLP LSNEL++KL+  +P  L +A +I+GMTP
Sbjct: 553 VYLDRQRKDQDRLRRDENRVIPTELDLKSLPGLSNELRQKLASRRPQTLAEAERIDGMTP 612

Query: 604 AALNLLLIYIKKNTVK 619
           AAL L+L+ I++N VK
Sbjct: 613 AALALILVAIRRNEVK 628


>gi|153008195|ref|YP_001369410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ochrobactrum anthropi ATCC 49188]
 gi|166222712|sp|A6WX77|MNMG_OCHA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151560083|gb|ABS13581.1| glucose inhibited division protein A [Ochrobactrum anthropi ATCC
           49188]
          Length = 636

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/610 (59%), Positives = 450/610 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I +Q+NL V++G   
Sbjct: 69  DGLMGRVADEAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQKMIAAQDNLFVVEGGAH 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +V+ D   + C  VVLTTGTFL G+IHIG+ KIPAGRMG+ P+  L   
Sbjct: 129 DLREEHGRITGVVLSDGRTLSCGAVVLTTGTFLNGLIHIGEKKIPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QI+CGITRT
Sbjct: 189 LTSFGFALGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITIPQIDCGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH +I  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHAVIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q   ++TIPGLE   +++PGYAIEYD+I+P+EL  +LET+K++GLFL
Sbjct: 309 YPNGISTSLPEDVQLDILKTIPGLETAAMLQPGYAIEYDFIDPRELKRSLETRKVTGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AGIN+AR+++  D +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGINAARRASGGDPVIIQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  KLG +G  R++RF       +  RSL +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADKLGILGHARKERFEARETALDEARSLTQSLTITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              S   +   QDG  R+AY+ LSYP+  +  L SI P+         E L+IE+ YA Y
Sbjct: 489 NLASRYDLRLNQDGVRRSAYDLLSYPEIDLDRLKSIWPELGAVDPATREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D   +  LSNELK KL   +P  + +A +++GMTPAA
Sbjct: 549 MDRQKSDIAVMEREEQLLIPAGLDIDGISGLSNELKHKLKQRRPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           L LL+  IKK
Sbjct: 609 LALLIAQIKK 618


>gi|254694683|ref|ZP_05156511.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 3 str. Tulya]
 gi|261215011|ref|ZP_05929292.1| glucose-inhibited division protein A [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916618|gb|EEX83479.1| glucose-inhibited division protein A [Brucella abortus bv. 3 str.
           Tulya]
          Length = 636

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYCDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|260546166|ref|ZP_05821906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus NCTC 8038]
 gi|260096273|gb|EEW80149.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus NCTC 8038]
          Length = 636

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|62290905|ref|YP_222698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700816|ref|YP_415390.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis biovar Abortus 2308]
 gi|189025118|ref|YP_001935886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus S19]
 gi|254707420|ref|ZP_05169248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis M163/99/10]
 gi|254709038|ref|ZP_05170849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis B2/94]
 gi|254713536|ref|ZP_05175347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M644/93/1]
 gi|254716109|ref|ZP_05177920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M13/05/1]
 gi|254731226|ref|ZP_05189804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 4 str. 292]
 gi|256030563|ref|ZP_05444177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis M292/94/1]
 gi|256258447|ref|ZP_05463983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 9 str. C68]
 gi|260758958|ref|ZP_05871306.1| glucose-inhibited division protein A [Brucella abortus bv. 4 str.
           292]
 gi|260884760|ref|ZP_05896374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus bv. 9 str. C68]
 gi|261217880|ref|ZP_05932161.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M13/05/1]
 gi|261314905|ref|ZP_05954102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M163/99/10]
 gi|261316537|ref|ZP_05955734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis B2/94]
 gi|261321270|ref|ZP_05960467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M644/93/1]
 gi|265987611|ref|ZP_06100168.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M292/94/1]
 gi|297247289|ref|ZP_06931007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 5 str. B3196]
 gi|81170531|sp|Q57AJ7|MNMG_BRUAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123547324|sp|Q2YR12|MNMG_BRUA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62197037|gb|AAX75337.1| GidA, glucose-inhibited division protein A [Brucella abortus bv. 1
           str. 9-941]
 gi|82616917|emb|CAJ12018.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:Glucose-inhibited division protein, A
           family:Glu [Brucella melitensis biovar Abortus 2308]
 gi|189020690|gb|ACD73412.1| glucose-inhibited division protein A [Brucella abortus S19]
 gi|260669276|gb|EEX56216.1| glucose-inhibited division protein A [Brucella abortus bv. 4 str.
           292]
 gi|260874288|gb|EEX81357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus bv. 9 str. C68]
 gi|260922969|gb|EEX89537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M13/05/1]
 gi|261293960|gb|EEX97456.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M644/93/1]
 gi|261295760|gb|EEX99256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis B2/94]
 gi|261303931|gb|EEY07428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M163/99/10]
 gi|264659808|gb|EEZ30069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M292/94/1]
 gi|297174458|gb|EFH33805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 5 str. B3196]
          Length = 636

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|237816410|ref|ZP_04595403.1| glucose-inhibited division protein A [Brucella abortus str. 2308 A]
 gi|237788477|gb|EEP62692.1| glucose-inhibited division protein A [Brucella abortus str. 2308 A]
          Length = 658

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 30  AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 89

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 90  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 149

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 150 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 209

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 210 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 269

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 270 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 329

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 330 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 389

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 390 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 449

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 450 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 509

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 510 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 569

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 570 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 629

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 630 AVALLIAQIRK 640


>gi|254690193|ref|ZP_05153447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 6 str. 870]
 gi|260755734|ref|ZP_05868082.1| glucose-inhibited division protein A [Brucella abortus bv. 6 str.
           870]
 gi|260675842|gb|EEX62663.1| glucose-inhibited division protein A [Brucella abortus bv. 6 str.
           870]
          Length = 636

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQRSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|163869378|ref|YP_001610634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella tribocorum CIP 105476]
 gi|189039329|sp|A9IZX9|MNMG_BART1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161019081|emb|CAK02639.1| glucose inhibited division protein A [Bartonella tribocorum CIP
           105476]
          Length = 622

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/613 (56%), Positives = 449/613 (73%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVI++GGGHAGCEAA+ +A++GA TAL+THK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIIVGGGHAGCEAASASARVGAQTALLTHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  QENL +++ E
Sbjct: 62  ALDGLMGRAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKEAIQKFLKEQENLTLVEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S ++++    I    VVLTTGTFL G IHIG     AGRMGD  S  L 
Sbjct: 122 VIDLIVKDHCVSGVILKKQGTIFSGAVVLTTGTFLNGFIHIGDKTWAAGRMGDPASVQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD+  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYHIKLGRLKTGTPARLSKKTIDWDRLSKQQADENPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II +NI  SA+YSG+I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNAQTHQIIRDNIHRSALYSGNIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LPE++Q  F++TI GLE   +++PGYAIEYD++NP++L  +LE + + GL
Sbjct: 302 TVYPNGLSTSLPEDVQISFLKTIEGLENATVLQPGYAIEYDFVNPQQLTKSLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK  KLD I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGKLDEIFISRSTAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + K  Q  +  RS+ K+L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADTRLTPLAQEWGIVSKVRWDCYQKKQQRLDQARSICKNLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+FL+YP  +++ L    P  +   S  +E L+IE+ YA
Sbjct: 482 TPNEASAHGLHVNHDGIRRSAYDFLAYPHMTLERLSHFWPQLQAIDSKTVESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  +   ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLDKQAQDIASLQRDERLEIPSSLDIQAISGLSNELKSKIQEVSPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L++ YI++ 
Sbjct: 602 AALSLIITYIQRQ 614


>gi|118591440|ref|ZP_01548838.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
 gi|118436112|gb|EAV42755.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
          Length = 628

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/622 (57%), Positives = 461/622 (74%), Gaps = 4/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ ++DV+VIGGGHAGCEAAA +A+ GA+TAL+TH+  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 4   LDLTFDVVVIGGGHAGCEAAAASARAGAATALVTHRFDTIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LYR AMQREI + E L V++
Sbjct: 64  IDALDGLMGRVADKGGIQFRMLNRRKGPAVRGPRAQADRKLYREAMQREIAAVEGLSVVE 123

Query: 122 GEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           GE      E++     +S I + D  +I C  +VLT+GTFLRG+IHIG  KIPAGR G++
Sbjct: 124 GEAHKIRFERDGETRSVSGIELADGRVINCRAIVLTSGTFLRGLIHIGDRKIPAGRSGEA 183

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P+  L  S  +  FD GRLKTGTPARLDG+TI WDK E+Q  DE  IPFS +TDKI   Q
Sbjct: 184 PALGLSESLEEIGFDLGRLKTGTPARLDGRTIHWDKLEEQPGDEDPIPFSTLTDKIETPQ 243

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C ITRT  ETHRII EN+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEP
Sbjct: 244 IPCHITRTTPETHRIIRENLSRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+   VYPNGIST+LPE+ Q  F++TIPGLE V +++PGYAIEYD+++P+EL PTLE 
Sbjct: 304 EGLDDHTVYPNGISTSLPEDAQIAFLKTIPGLEDVVVLQPGYAIEYDHVDPRELRPTLEA 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K+ SGL+LAGQINGTTGYEEA AQGL+AG+N+A K+         R++ YIGVMIDDL +
Sbjct: 364 KRCSGLYLAGQINGTTGYEEAGAQGLIAGLNAALKAAGKAPFVVDRSEGYIGVMIDDLIT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G+ EPYRMFTSRAEYR+SLR DNAD RLTP+G+ +GC+ + R++ F   + +    R L
Sbjct: 424 RGITEPYRMFTSRAEYRLSLRADNADQRLTPLGLAIGCVSDTRREAFETKMAKIAAAREL 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L +L +T        +   QDG  R+A++ LSYP+ + + L  I P+ +     + E++ 
Sbjct: 484 LTTLTVTPSEAQKKGLPVNQDGIRRSAFDLLSYPNVTFEGLTQIWPELKDIDPAIAEQVA 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            ++ YA Y  RQM + + +K +E   IP  FDY ++  LSNE+++KL  ++P  L QAS+
Sbjct: 544 TDALYAVYLDRQMADIEALKRDEALSIPDGFDYEAITGLSNEVRQKLIDIRPATLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           ++GMTPAAL L+L ++K+ + K
Sbjct: 604 MDGMTPAALTLILSHLKRQSQK 625


>gi|256370459|ref|YP_003107970.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
 gi|256000622|gb|ACU49021.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
          Length = 636

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/611 (58%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A  ++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQHVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|260567469|ref|ZP_05837939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 4 str. 40]
 gi|260156987|gb|EEW92067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 4 str. 40]
          Length = 636

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIQANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|254696310|ref|ZP_05158138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760681|ref|ZP_05873024.1| glucose-inhibited division protein A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260671113|gb|EEX57934.1| glucose-inhibited division protein A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 636

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ Y+ 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYSV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|23502909|ref|NP_699036.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis 1330]
 gi|161619975|ref|YP_001593862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella canis ATCC 23365]
 gi|38257630|sp|Q8FY28|MNMG_BRUSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039331|sp|A9M9E4|MNMG_BRUC2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|23348940|gb|AAN30951.1| glucose-inhibited division protein A [Brucella suis 1330]
 gi|161336786|gb|ABX63091.1| glucose-inhibited division protein A [Brucella canis ATCC 23365]
          Length = 636

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|254700691|ref|ZP_05162519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis bv. 5 str. 513]
 gi|261751200|ref|ZP_05994909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 5 str. 513]
 gi|261740953|gb|EEY28879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 5 str. 513]
          Length = 636

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADKAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG  P+  L  
Sbjct: 128 ADLVCDSERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGGKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|225853492|ref|YP_002733725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis ATCC 23457]
 gi|256263028|ref|ZP_05465560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 2 str. 63/9]
 gi|225641857|gb|ACO01771.1| glucose-inhibited division protein A [Brucella melitensis ATCC
           23457]
 gi|263092901|gb|EEZ17076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 2 str. 63/9]
          Length = 636

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|326410056|gb|ADZ67121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis M28]
 gi|326539773|gb|ADZ87988.1| glucose-inhibited division protein A [Brucella melitensis M5-90]
          Length = 634

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 66  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 126 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 186 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 246 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 306 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 366 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 426 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 486 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPA
Sbjct: 546 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPA 605

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 606 AVALLIAQIRK 616


>gi|294851290|ref|ZP_06791963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. NVSL 07-0026]
 gi|294819879|gb|EFG36878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. NVSL 07-0026]
          Length = 636

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGP TQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPHTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D+ +++C  VVLTTGTFL G+IHIG+ + PAGRMG  P+  L  
Sbjct: 128 ADLVCDGERISGVTLADDRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGGKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|256060025|ref|ZP_05450207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella neotomae 5K33]
 gi|261324002|ref|ZP_05963199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella neotomae 5K33]
 gi|261299982|gb|EEY03479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella neotomae 5K33]
          Length = 636

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGG+AGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGYAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|241206939|ref|YP_002978035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860829|gb|ACS58496.1| glucose inhibited division protein A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 625

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/616 (59%), Positives = 462/616 (75%), Gaps = 1/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIVIGGGHAG EAA+ AA+LGA TALITH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDNVFDVIVIGGGHAGSEAASAAARLGAKTALITHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +  +LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRILNKKKGAAVRGPRTQADRKLYRLAMLAAIEATPDLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLEVVDGCVAGVIMKDGRTLKAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT  QIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEELVPFSFMTDTITTPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL  +LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQAAFIKTIPGLETARILQPGYAIEYDHVDPRELTLSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A +S+      FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSSDSHPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+ M+LGC+   R +RF  Y  E +  R+LL+S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADMRLTPLAMRLGCVSNARVQRFTSYRAEIDTSRALLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIE 539
           L LT        ++   DG+ RTAY+ LSYP++    L  + P+   +    + E L+IE
Sbjct: 481 LALTPNEARRAGLNINLDGQRRTAYDLLSYPNYDFVALRHVWPEKLGQIGPKIAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KLS  +PF++ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIVDQQRDEQRQIPPDFNYDALSGLSNELKLKLSAARPFSIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKK 615
           GMTPAA+ LLL+++++
Sbjct: 601 GMTPAAVALLLVHLRR 616


>gi|254705062|ref|ZP_05166890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis bv. 3 str. 686]
 gi|261755765|ref|ZP_05999474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 3 str. 686]
 gi|261745518|gb|EEY33444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 3 str. 686]
          Length = 636

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLT GTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTIGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|256045663|ref|ZP_05448541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|260562965|ref|ZP_05833451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. 16M]
 gi|265992085|ref|ZP_06104642.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|21263665|sp|Q8YJS5|MNMG_BRUME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|260152981|gb|EEW88073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. 16M]
 gi|263003151|gb|EEZ15444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 636

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRL+MQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLSMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGNRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|17986291|ref|NP_538925.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 1 str. 16M]
 gi|17981873|gb|AAL51189.1| glucose inhibited division protein a [Brucella melitensis bv. 1
           str. 16M]
          Length = 658

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 30  AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 89

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRL+MQ+ I  QENL V++G  
Sbjct: 90  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLSMQQMITEQENLTVVEGGA 149

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 150 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 209

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 210 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 269

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG R+GHQIFLEPEGL+ D 
Sbjct: 270 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGNRDGHQIFLEPEGLDDDT 329

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 330 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 389

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 390 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 449

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 450 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 509

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 510 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 569

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPA
Sbjct: 570 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPA 629

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 630 AVALLIAQIRK 640


>gi|239833102|ref|ZP_04681431.1| glucose-inhibited division protein A [Ochrobactrum intermedium LMG
           3301]
 gi|239825369|gb|EEQ96937.1| glucose-inhibited division protein A [Ochrobactrum intermedium LMG
           3301]
          Length = 654

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/610 (58%), Positives = 448/610 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 27  FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I +Q+NL V++G   
Sbjct: 87  DGLMGRVADEAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQKMIAAQDNLSVVEGGAH 146

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I+ +++ D   + C  VVLTTGTFL G+IHIG+ KIPAGRMG+ P+  L   
Sbjct: 147 DLLEQDGRITGVILSDGRTLTCGAVVLTTGTFLNGLIHIGEKKIPAGRMGEKPALGLSER 206

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QI+CGITRT
Sbjct: 207 LTSFGFALGRLKTGTPPRLDGRTIDWQSLDMQSADEDPVPFSLMTDRITTPQIDCGITRT 266

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 267 TPETHAIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 326

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q   ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K++GLFL
Sbjct: 327 YPNGISTSLPEDVQLDILKTIPGLEKAVMLQPGYAIEYDFIDPRELKRSLETRKVTGLFL 386

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AGIN+AR+++  + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 387 AGQINGTTGYEEAGAQGLLAGINAARRASGGEPVIIQRTEAYIGVMVDDLTSRGVSEPYR 446

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  +LG +G  R++RF       +  R L +SL +T 
Sbjct: 447 MFTSRAEFRLSLRADNADQRLTPLADRLGILGHARKERFEAREAALSKARVLTQSLTITP 506

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYP+  +  L  I P+         E L+IE+ YA Y
Sbjct: 507 NLAKQYDLHLNQDGVRRSAYDLLSYPEIDLDRLMPIWPELDAIDPTAREALEIEAQYAVY 566

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D   +  LSNELK KL   KP  + +A +++GMTPAA
Sbjct: 567 MDRQKSDIAVMEREEQLLIPAGLDIDGISGLSNELKHKLKQRKPETIAEAQRVDGMTPAA 626

Query: 606 LNLLLIYIKK 615
           L LL+  IKK
Sbjct: 627 LALLIAQIKK 636


>gi|148559142|ref|YP_001259866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ovis ATCC 25840]
 gi|166222912|sp|A5VT19|MNMG_BRUO2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148370399|gb|ABQ60378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ovis ATCC 25840]
          Length = 636

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQIITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ +  AGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFQAGRMGEKPALGLSK 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|225626440|ref|ZP_03784479.1| glucose-inhibited division protein A [Brucella ceti str. Cudo]
 gi|225618097|gb|EEH15140.1| glucose-inhibited division protein A [Brucella ceti str. Cudo]
          Length = 658

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 30  AFDVIVIGGGHAGYEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 89

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 90  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 149

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 150 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 209

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 210 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 269

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 270 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 329

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 330 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 389

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 390 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 449

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 450 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 509

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 510 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 569

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 570 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 629

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 630 AVALLIAQIRK 640


>gi|256158559|ref|ZP_05456449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M490/95/1]
 gi|256253968|ref|ZP_05459504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti B1/94]
 gi|260169468|ref|ZP_05756279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. F5/99]
 gi|261221110|ref|ZP_05935391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti B1/94]
 gi|261758995|ref|ZP_06002704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. F5/99]
 gi|265997071|ref|ZP_06109628.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M490/95/1]
 gi|260919694|gb|EEX86347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti B1/94]
 gi|261738979|gb|EEY26975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. F5/99]
 gi|262551539|gb|EEZ07529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M490/95/1]
          Length = 636

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGYEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|306843477|ref|ZP_07476078.1| glucose-inhibited division protein A [Brucella sp. BO1]
 gi|306276168|gb|EFM57868.1| glucose-inhibited division protein A [Brucella sp. BO1]
          Length = 636

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYR AMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRHAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLVDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP+++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPKDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                +  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGNYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A + +GMTPA
Sbjct: 548 YMERQQSDIAIMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRADGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|163844079|ref|YP_001628483.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis ATCC 23445]
 gi|189039332|sp|B0CJG1|MNMG_BRUSI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163674802|gb|ABY38913.1| glucose-inhibited division protein A [Brucella suis ATCC 23445]
          Length = 636

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/611 (57%), Positives = 455/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG +SCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVISCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLA+Q+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAIQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|256112385|ref|ZP_05453306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 3 str. Ether]
 gi|265993821|ref|ZP_06106378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 3 str. Ether]
 gi|262764802|gb|EEZ10723.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 3 str. Ether]
          Length = 636

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  LDGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  + L+IE+ YA 
Sbjct: 488 PNLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTRKALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+ PA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGIPPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|254718103|ref|ZP_05179914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. 83/13]
 gi|265983056|ref|ZP_06095791.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. 83/13]
 gi|306839728|ref|ZP_07472530.1| glucose-inhibited division protein A [Brucella sp. NF 2653]
 gi|264661648|gb|EEZ31909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. 83/13]
 gi|306405188|gb|EFM61465.1| glucose-inhibited division protein A [Brucella sp. NF 2653]
          Length = 636

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/611 (57%), Positives = 454/611 (74%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   AFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  
Sbjct: 68  FDGLMGRVADKAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLIVVEGGA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L  
Sbjct: 128 ADLVCDGERISGVTLVDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MT++IT  QIECGITR
Sbjct: 188 RLLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTNRITTPQIECGITR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 248 TTPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q + ++TIPGL K  +++PGYAIEYD+I+P+EL  +LET+K+ GLF
Sbjct: 308 VYPNGISTSLPEDVQLEILKTIPGLGKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSIT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA 
Sbjct: 488 PNLAGHYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPITREALEIEAQYAV 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPA
Sbjct: 548 YMERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           A+ LL+  I+K
Sbjct: 608 AVALLIAQIRK 618


>gi|240851402|ref|YP_002972805.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
 gi|240268525|gb|ACS52113.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
          Length = 622

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/613 (56%), Positives = 443/613 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDV+++GGGHAGCEAA+ +A++GA TAL+THK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVVIVGGGHAGCEAASASARVGAKTALVTHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  QENL +I+ E
Sbjct: 62  ALDGLMGRAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKKAIQKLLKEQENLTLIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S ++++    I    VVLTTGTFL G IHIG     AGRMGD  S  L 
Sbjct: 122 VIDLVVKDNCVSGVILKKQGTILSGAVVLTTGTFLNGFIHIGDKTWAAGRMGDQSSVHLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD   KQ ADE  IPFS +T+KI   QIEC IT
Sbjct: 182 KRLKNYHIKLGRLKTGTPARLSKKTIAWDHLPKQQADENPIPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH+II +NI  SA+YSG+I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNERTHQIIRDNIYRSALYSGNIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LPE++Q   ++TI GLE   +++PGYAIEYD++NP++L  +LE + + GL
Sbjct: 302 TVYPNGLSTSLPEDVQISLLKTIEGLENAIVLQPGYAIEYDFVNPQQLTRSLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+A K  KLD I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAAHKVGKLDEILISRSTAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  K G + E R + + K  +  +  RS+ ++L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADTRLTPLAQKWGIVSEIRWECYQKKQERLDQARSICQNLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+FL+YP  +++ L    P  +   S   E L+IE+ YA
Sbjct: 482 TPNEASAHGLHVNHDGIRRSAYDFLAYPHMTLERLSDFWPQLQTIDSKTAESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q      ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLDKQAQNIASLQRDERLEIPSSLDIQAISGLSNELKSKIQEVSPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L++ YI++ 
Sbjct: 602 AALSLIITYIQRQ 614


>gi|304392708|ref|ZP_07374648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ahrensia sp. R2A130]
 gi|303295338|gb|EFL89698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ahrensia sp. R2A130]
          Length = 625

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/613 (55%), Positives = 447/613 (72%), Gaps = 1/613 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +S+DV+VIGGGHAG EAA+ +A++GA TAL+T     IG+MSCNPAIGGLGKGHLVREID
Sbjct: 5   KSFDVVVIGGGHAGTEAASASARMGAKTALVTLSADGIGTMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRVADA+GIQFR+LN +KGPAVRGPRTQ+DR+LY++AM  E  SQ NL +I+GE
Sbjct: 65  ALDGLMGRVADASGIQFRMLNRRKGPAVRGPRTQSDRKLYKIAMADETASQNNLAIIEGE 124

Query: 124 VAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V          +S + + D + IRC  VVLTTGTFL G+IHIG+  +PAGRMG+ PS +L
Sbjct: 125 VIDIVPYSDGRVSGVQLADGTFIRCGAVVLTTGTFLNGLIHIGEKTVPAGRMGEKPSIAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            N     +   GRLKTGTPARLDG+TI W   E Q AD+  +PFS +TD+I   Q+ CGI
Sbjct: 185 ANRLRSLELPLGRLKTGTPARLDGRTIDWASLEMQEADDPPVPFSTLTDRIIVPQVACGI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH II +N+  SA+YSG I   GPRYCPS+EDKIV+FGER+GHQIFLEPEGL+ 
Sbjct: 245 TRTTPATHAIIRDNVHRSAMYSGQIGGVGPRYCPSVEDKIVKFGERDGHQIFLEPEGLDD 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LPEE+Q +FI TIPGLE+  I++PGYAIEYDY++P+ L P+LE + + G
Sbjct: 305 HTVYPNGISTSLPEEVQSEFIATIPGLEQAKILQPGYAIEYDYVDPRALRPSLEIRAMQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEA AQGLVAG+N+AR+   ++ + FSR++SYIGVM+DDL ++GV E
Sbjct: 365 LYLAGQINGTTGYEEAGAQGLVAGLNAARQVAGMEPVHFSRSESYIGVMLDDLVTRGVSE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLTP  ++LG     RQ  F   + E +  R+L  S+ 
Sbjct: 425 PYRMFTSRAEYRLSLRADNADQRLTPKAIELGICSATRQATFTSKLTELDAARNLCGSVS 484

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           LT    ++  +   QDG  R A + L+Y + S++ L +I P+       + E+++IE+ Y
Sbjct: 485 LTPSEATAHGLKITQDGVRRDATDLLAYSEVSMEILSNIWPELASLDPAIAEQVEIEAGY 544

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +   +  +E   IP  FD++++  +SNE + KL  ++P ++ QAS+I+GMT
Sbjct: 545 AVYMARQKRDIDAVLRDEALSIPDQFDFAAIGGMSNEARSKLVSVRPSSIGQASRIDGMT 604

Query: 603 PAALNLLLIYIKK 615
           PAA  LLL  +++
Sbjct: 605 PAATTLLLAAVRR 617


>gi|319407871|emb|CBI81524.1| glucose inhibited division protein A [Bartonella sp. 1-1C]
          Length = 622

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/613 (55%), Positives = 446/613 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ STIG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGAQTALVTYQISTIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN KKGPAVRGPRTQADR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRKKGPAVRGPRTQADRQLYKNKIQQLLQEQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S +V++    I  + VVLTTGTFLRG++HIG    PAGRMG+  S  L 
Sbjct: 122 VIDIIVKDNRVSGVVLKKQGSIFSNAVVLTTGTFLRGLVHIGNKTWPAGRMGEKSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPARL+ KTI W+K  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYSINLGRLKTGTPARLNKKTIFWNKLSKQQADENPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL  +
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLENN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPEEIQ  F+RTI GLE V I++PGYAIEYD+++P++LF TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEEIQLSFLRTIEGLENVEILQPGYAIEYDFVDPRQLFKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL  +GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLEEIILSRSTAYIGVMVDDLILRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + +     +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQEWGIVSQTRWSCYQQKQHHLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +   +DG  R+AY+ L+YP  ++  L    P      + ++E L+IE+ YA
Sbjct: 482 TPNEAFVHGLQINRDGVRRSAYDLLAYPHMNVARLAHFWPQLHSIDAKIVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQTQDIIALQRDEHLEIPSSLNFQEISGLSNELKTKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L+L YI++ 
Sbjct: 602 AALSLILTYIQRQ 614


>gi|319404911|emb|CBI78512.1| glucose inhibited division protein A [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 622

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/613 (55%), Positives = 446/613 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TALIT++ STIG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGAQTALITYQISTIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN KKGPAVRGPRTQADR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRKKGPAVRGPRTQADRQLYKNKIQQLLQEQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S +V++    I  + VVLTTGTFLRG++HIG    PAGRMG+  S  L 
Sbjct: 122 VIDLIVKDNRVSGVVLKKQGSIFSNAVVLTTGTFLRGLVHIGNKTWPAGRMGEKSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPARL+ KTI W+K  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYSINLGRLKTGTPARLNKKTIFWNKLSKQQADEDPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL  +
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLENN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPEEIQ  F+RTI GLE + I++PGYAIEYD+++P++LF TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEEIQLSFLRTIEGLENIEILQPGYAIEYDFVDPRQLFKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL  +GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLEEIILSRSTAYIGVMVDDLILRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + +     +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQEWGIVSQTRWSCYQQKQHHLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +   +DG  R+AY+ L+YP  ++  L    P      + ++E L+IE+ YA
Sbjct: 482 TPNEAFVHGLQINRDGVRRSAYDLLAYPHMNVARLAYFWPQLHSIDAKIVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLKRQTQDIIALQRDEHLEIPSSLNFQEISGLSNELKTKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L+L YI++ 
Sbjct: 602 AALSLILTYIQRQ 614


>gi|13473775|ref|NP_105343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesorhizobium loti MAFF303099]
 gi|21263678|sp|Q98DZ1|MNMG_RHILO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14024526|dbj|BAB51129.1| glucose inhibited division protein A; GidA [Mesorhizobium loti
           MAFF303099]
          Length = 623

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/609 (57%), Positives = 454/609 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVREIDA+
Sbjct: 5   YDVVVVGGGHAGCEAASAAARAGAKTALVTLRFDTIGVMSCNPAIGGLGKGHLVREIDAM 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDV++GEV 
Sbjct: 65  DGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVVEGEVL 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F   +  I+++++     + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S  L  +
Sbjct: 125 DFEINEGRITAVLLAGGRRLACGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASLGLSAT 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTP RLDGKTI W   E Q ADE  +PFS M+D+IT  QIECGITRT
Sbjct: 185 MDRAGFKLGRLKTGTPPRLDGKTIDWASLESQAADEDPVPFSLMSDRITTPQIECGITRT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH +I  N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 245 TSATHELIRANLGRSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDDTV 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP+++Q + ++TIPGLE+  +++PGYAIEYD+++P+EL  TLETK+I+GLFL
Sbjct: 305 YPNGISTSLPQDVQLEILKTIPGLERATMLQPGYAIEYDHVDPRELHQTLETKRIAGLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGL+AG+N+AR++   + I  SRT++YIGVM+DDLTS+G+ EPYR
Sbjct: 365 AGQINGTTGYEEAAGQGLLAGLNAARRAAGGEQIVLSRTEAYIGVMVDDLTSRGISEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  KLG    +R +R+   +Q  +  R L +S+ +T 
Sbjct: 425 MFTSRAEFRLSLRADNADERLTPLAAKLGIASVQRMQRYGDVMQRLDAARELARSVAMTP 484

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   +   +DG  R+ YE L+YPD  +  L  + P      +   ERL+ E+ Y+ Y
Sbjct: 485 NEAARQGLEINRDGVRRSGYELLAYPDVDVAWLARVEPKFAAIDAKTAERLETEAKYSVY 544

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +  +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EGMTPAA
Sbjct: 545 LDRQKSDVAQIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEGMTPAA 604

Query: 606 LNLLLIYIK 614
           L +++ +++
Sbjct: 605 LAIIVAHVR 613


>gi|299133194|ref|ZP_07026389.1| glucose inhibited division protein A [Afipia sp. 1NLS2]
 gi|298593331|gb|EFI53531.1| glucose inhibited division protein A [Afipia sp. 1NLS2]
          Length = 624

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/613 (56%), Positives = 435/613 (70%), Gaps = 1/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           + DVIV+GGGHAGCEAAA +A+ GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVREIDA
Sbjct: 4   TLDVIVVGGGHAGCEAAAASARFGAKTALLTHRFATIGAMSCNPAIGGLGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR+AD  GIQFRVLN +KGPAVRGPR Q DR LY  AMQ EI    NL VI+GE 
Sbjct: 64  LDGLMGRMADRGGIQFRVLNRRKGPAVRGPRAQIDRALYATAMQGEIRETPNLTVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ + + D     C  VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DELLLENGRIAGLKLADGREFACRAVVITTGTFLRGIIHLGEKNWPAGRIDEAPAVGLSG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF +  F  GRLKTGTPARLDG TI WD  E+Q  D+   PFS +TDKIT  Q+ECGITR
Sbjct: 184 SFERIGFTLGRLKTGTPARLDGTTIDWDAVERQPGDDPAEPFSTLTDKITIPQVECGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG IKS GPRYCPSIEDKIVRFG+R+ HQ+FLEPEGL    
Sbjct: 244 TTEATHELIRANVHRSPMYSGQIKSTGPRYCPSIEDKIVRFGDRDSHQVFLEPEGLTDST 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE+  +IRPGYAIEYD+++P+EL PTLETK++ GLF
Sbjct: 304 VYPNGISTSLPEEVQKAILTTIPGLERTRMIRPGYAIEYDHVDPRELAPTLETKRVPGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+AR +   +   F R D Y+GVMIDDLTS+G+ EPY
Sbjct: 364 LAGQINGTTGYEEAGAQGLVAGLNAARMAGGGEGAVFDRADGYLGVMIDDLTSRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LG +G RR+  FA  +Q  N  +   KSL LT
Sbjct: 424 RMFTSRAEYRLTLRADNADRRLTERGIALGIVGSRRETSFAAKMQALNAAKDAAKSLSLT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +S  +DG+ R+A+E L+YP+    ++  I P   +    + E ++I++ Y  
Sbjct: 484 PTEGIRHGLSLNRDGQRRSAFELLAYPEIGWADVARIWPQLAEVPPAIAEHVEIDAKYDV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E  L+    DY+ +P LSNE ++KL   +P  + QA++IE MTPA
Sbjct: 544 YLARQAADVSAFRRDEA-LVLTGVDYAEVPGLSNEARQKLQTAQPRTIGQAARIEAMTPA 602

Query: 605 ALNLLLIYIKKNT 617
           AL +L  Y+++ +
Sbjct: 603 ALGILAAYLRRQS 615


>gi|319406397|emb|CBI80038.1| glucose inhibited division protein A [Bartonella sp. AR 15-3]
          Length = 622

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/613 (56%), Positives = 443/613 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ ST+G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGARTALVTYQVSTLGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN +KGPAVRGPRTQADRELY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQADRELYKNKIQQLLQKQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS + ++    I  + VVLTTGTFLRG+IHIG    PAGRMG+  S  L 
Sbjct: 122 VIDLIVKDDHISGVFLKKKGKILSNAVVLTTGTFLRGLIHIGNKIWPAGRMGERASIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +     RLKTGTPARL  KTI W+K  KQ ADE  IPFS +T+KI   QIEC IT
Sbjct: 182 EHLENYGVHLRRLKTGTPARLSKKTISWNKLPKQQADEEPIPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+ D
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLDND 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPEEIQ  F+RTI GLE V I++PGYAIEYD+++P++L  TLE K + GL
Sbjct: 302 TIYPNGISTSLPEEIQFSFLRTIEGLENVEILQPGYAIEYDFVDPRQLSKTLELKSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   L+ I  SR+ +YIGVMIDDL S+G+ EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLEEIILSRSTAYIGVMIDDLVSRGICEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  K G + + R  R+ +  Q  +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQKWGIVSQIRWIRYQQKQQLLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S   +    DG  R+AY+ L+ P  S+  L    P  R   +   E L+IE+ YA
Sbjct: 482 TPNEASIHGLQINHDGIRRSAYDLLARPHMSVARLAHFWPQLRSIDAKTAEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E+  IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQTQDIIALQRDERLEIPSSLNFQEISGLSNELKAKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L+L YI++ 
Sbjct: 602 AALSLILTYIQRQ 614


>gi|319780613|ref|YP_004140089.1| glucose inhibited division protein A [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166501|gb|ADV10039.1| glucose inhibited division protein A [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 626

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/614 (57%), Positives = 450/614 (73%), Gaps = 1/614 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M NR YDV+V+GGGHAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTNR-YDVVVVGGGHAGCEAASAAARAGARTALVTLRFDTIGVMSCNPAIGGLGKGHLVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDV+
Sbjct: 60  EIDAMDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVV 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEV  F      I+++++ D   + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S 
Sbjct: 120 EGEVLDFEIADGQITAVLLADGRRLVCGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASL 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS MTD IT  QI C
Sbjct: 180 GLSATMDRAGFKLGRLKTGTPPRLDGRTIDWASLESQAADADPVPFSLMTDCITTPQINC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRT   TH +I  N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL
Sbjct: 240 GITRTTTATHELIRANLGRSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGL 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LPE++Q   ++TI GLE+  +++PGYAIEYD+++P+EL  TLETK+I
Sbjct: 300 DDDTVYPNGISTSLPEDVQLDILKTITGLERAVMLQPGYAIEYDHVDPRELHQTLETKRI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAA QGL+AG+N+AR++   + I  SRT++YIGVM+DDLTS+G+
Sbjct: 360 SGLFLAGQINGTTGYEEAAGQGLLAGLNAARRAAGSEQIVLSRTEAYIGVMVDDLTSRGI 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+  KLG    +R +R+   +Q  +  R L KS
Sbjct: 420 AEPYRMFTSRAEFRLSLRADNADERLTPVAAKLGIASAQRMRRYGDVMQNLDEARELAKS 479

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L +T    +   +   +DG  R+ YE LSYPD  +  L  I            ERL+ E+
Sbjct: 480 LTMTPNEAARHGLEINRDGVRRSGYELLSYPDVDVAWLGRIDSRFAAIDGKTAERLETEA 539

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +  +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EG
Sbjct: 540 KYSVYLDRQKTDVAQIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEG 599

Query: 601 MTPAALNLLLIYIK 614
           MTPAAL +++ +++
Sbjct: 600 MTPAALAIIVAHVR 613


>gi|121602359|ref|YP_988350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella bacilliformis KC583]
 gi|166222909|sp|A1UQU7|MNMG_BARBK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120614536|gb|ABM45137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella bacilliformis KC583]
          Length = 622

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/613 (55%), Positives = 439/613 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVI++GGGHAGCEAA+ +A+ GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIIVGGGHAGCEAASASARTGARTALVTYRLSDMGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGRAADFAGIQFRLLNRRKGPAVRGPRTQADRQLYKKAIQKLLREQDNLFIIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S + +++   I    VVLTTGTFL G+IHIG    PAGRMG+  S  L 
Sbjct: 122 VVDIIVKNNRVSGVFLKNQGNIFSGAVVLTTGTFLNGLIHIGDKTWPAGRMGEQASVQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD   KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYGISFGRLKTGTPARLSKKTIRWDVLPKQQADEDPVPFSFLTEKIKQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH II ENI  SA+YSG I+  GPRYCPSIEDKI++FGER+GHQIFLEPEGL  D
Sbjct: 242 RTNAQTHHIISENIHRSALYSGAIEGVGPRYCPSIEDKIIKFGERDGHQIFLEPEGLEDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LPE++Q   ++TI GLE VN+++PGYAIEYD+INP+ L  TLE + + GL
Sbjct: 302 VIYPNGISTSLPEDVQISLLKTIEGLENVNVLQPGYAIEYDFINPQYLSKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   LD I  SR+ +YIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLDEIILSRSTAYIGVMIDDLISRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G +  +R   +    Q  +  RS+ + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADARLTPLAQEWGIVSHKRWTCYQNKQQRLDHARSICQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY  LSYP+ ++  L    P      +  +E L+IE+ YA
Sbjct: 482 TPNEASAHGLQINNDGVRRSAYSLLSYPNMNVARLTDFWPQLHSIDAKTVESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   +  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQKQDIAALQRDESLEIPSSLNIQAIYGLSNELKTKIQKISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L++ YI++ 
Sbjct: 602 AALSLIITYIQRQ 614


>gi|209883524|ref|YP_002287381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oligotropha carboxidovorans OM5]
 gi|254811516|sp|B6JAJ1|MNMG_OLICO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|209871720|gb|ACI91516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oligotropha carboxidovorans OM5]
          Length = 624

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/616 (54%), Positives = 443/616 (71%), Gaps = 1/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +++DVIV+GGGHAGCEAAA +A+LGA TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRKTFDVIVVGGGHAGCEAAAASARLGAETALLTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR+AD  GIQFRVLN +KGPAVRGPR Q DR LY  AMQ EI +  +L VI+
Sbjct: 61  IDALDGLMGRMADTGGIQFRVLNRRKGPAVRGPRAQIDRALYAAAMQAEIRATPHLSVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      + + I+ + + D     C  VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADALVLKDDRIAGLKLADGREFSCRAVVITTGTFLRGIIHLGETSWPAGRINEAPAMG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTPARLDG TI W   E+Q  D+   PFS +T++IT  Q+ECG
Sbjct: 181 LSKSFEQIGFTLGRLKTGTPARLDGTTIDWAAVERQPGDDPAEPFSTLTEEITTPQVECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I EN+  S +YSG I+S GPRYCPSIEDKIVRFG+R+ HQIFLEPEGL 
Sbjct: 241 ITRTTTATHAVIRENVHRSPLYSGQIQSIGPRYCPSIEDKIVRFGDRDSHQIFLEPEGLK 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE+  +IRPGYAIEYD+++P+EL PTLET+++ 
Sbjct: 301 DTTVYPNGISTSLPEEVQKAILTTIPGLERTRMIRPGYAIEYDHVDPRELEPTLETRRVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+AR +   + + F R D Y+GVMIDDLTS+GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAARTAGGKEGVIFDRADGYLGVMIDDLTSRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LG +G  RQ +F   ++  +  +   KSL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTWRGLALGVVGFARQAQFDAKMRALDAAKEAAKSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT        ++  +DG+ R+A+E L+YP+    ++  I P   + +  + E ++I++ 
Sbjct: 481 SLTPTEGIRHGLALNRDGQRRSAFELLAYPEIGWADVARIWPQLAEVTPDIAEHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +    + +E  L+    DY+ +P LSNE ++KL   +P  + QA++IE M
Sbjct: 541 YDVYLARQAADVSAFRRDEA-LVLSGVDYADVPGLSNEARQKLQKAQPRTIGQAARIEAM 599

Query: 602 TPAALNLLLIYIKKNT 617
           TPAAL +L  Y+++ +
Sbjct: 600 TPAALGILTAYLRRRS 615


>gi|148251783|ref|YP_001236368.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bradyrhizobium sp. BTAi1]
 gi|166222911|sp|A5E8G8|MNMG_BRASB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146403956|gb|ABQ32462.1| Glucose-inhibited division protein A [Bradyrhizobium sp. BTAi1]
          Length = 625

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/620 (54%), Positives = 435/620 (70%), Gaps = 1/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  +A++GA TAL+TH  +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAAEASARMGARTALVTHHFATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I    NL V++GE 
Sbjct: 67  LDGLMGRVADAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQAAIRETANLTVVEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ + + D   + C  +V+TTGTFLRG+IH+G+   PAGR+G++P+  L  
Sbjct: 127 DQLIVADGQITGLRLADGRPLACGAIVITTGTFLRGLIHLGEKTWPAGRVGEAPALGLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F  GRLKTGTP RLDG TI W   E Q  D+   PFS +T  IT  QI+CGITR
Sbjct: 187 SLEAIGFRLGRLKTGTPPRLDGTTIDWSAVEMQPGDDPPEPFSVLTQTITTPQIQCGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG IKS GPRYCPS+EDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 247 TTTATHDVIRANVHRSPMYSGQIKSTGPRYCPSVEDKIVRFGDRDGHQIFLEPEGLDDTT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE+V +IRPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 307 VYPNGISTSLPEEVQLALLPTIPGLERVRMIRPGYAIEYDHVDPRELEPTLQTKRMRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   + I F R D Y+GVMIDDL ++G+ EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLVAGLNAALTAGGGEPIVFDRADGYVGVMIDDLVTRGITEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +     +      RSL +S+ +T
Sbjct: 427 RMFTSRAEYRLTLRADNADQRLTDKGIALGCVGGDRARFHRTKMDALEAARSLARSVTIT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A+E ++YP+     +  I P+       +   L+I++ Y  
Sbjct: 487 PNEAAKYGLTLNRDGQRRSAFELMAYPEIGFSEVRGIWPELGTIGPAIAVHLEIDAKYDV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E  L+  D DY+ +P LSNE + KL+  +P+ + QA +I+GMTPA
Sbjct: 547 YVRRQSEDVDAFRRDEG-LVLGDIDYALVPGLSNEARAKLTAARPWTIGQAGRIDGMTPA 605

Query: 605 ALNLLLIYIKKNTVKLNEIV 624
           AL +L  Y+++   +   +V
Sbjct: 606 ALGILAAYLRREARRSKAMV 625


>gi|260467200|ref|ZP_05813377.1| glucose inhibited division protein A [Mesorhizobium opportunistum
           WSM2075]
 gi|259029053|gb|EEW30352.1| glucose inhibited division protein A [Mesorhizobium opportunistum
           WSM2075]
          Length = 629

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/602 (56%), Positives = 446/602 (74%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVREIDA+DGLMGRVAD
Sbjct: 14  HAGCEAASAAARAGARTALVTLRFDTIGVMSCNPAIGGLGKGHLVREIDAMDGLMGRVAD 73

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
           AAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDVI+ EV  F  E+  I
Sbjct: 74  AAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVIEAEVLDFEIEEGRI 133

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
           +++++ +   + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S  L  +  +  F  G
Sbjct: 134 AAVLLANGRRLACGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASLGLSATMSRAGFALG 193

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           RLKTGTP RLDG+TI W   E Q AD+  +PFS MTD+I   QI+CGITRT   TH +I 
Sbjct: 194 RLKTGTPPRLDGRTIDWASLESQAADDDPVPFSLMTDRIETPQIDCGITRTTTATHELIR 253

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
            N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+ D VYPNGIST+L
Sbjct: 254 ANLARSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDDTVYPNGISTSL 313

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           PE++Q   ++TIPGLE+  +++PGYAIEYD+++P+EL  TLETK+++GLFLAGQINGTTG
Sbjct: 314 PEDVQLDILKTIPGLERAVMLQPGYAIEYDHVDPRELSQTLETKRVAGLFLAGQINGTTG 373

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAA QGL+AG+N+AR+++  + I  SRT++YIGVM+DDLTS+G+ EPYRMFTSRAE+R
Sbjct: 374 YEEAAGQGLLAGLNAARRASGGEQIVLSRTEAYIGVMVDDLTSRGISEPYRMFTSRAEFR 433

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS 494
           +SLR DNAD RLTP+  KLG    +R +R+   ++  +  R+L  +L +T    +   + 
Sbjct: 434 LSLRADNADERLTPLAAKLGIASAQRMQRYGDAMRRLDEARALATALTMTPNEAARHGLE 493

Query: 495 FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
             +DG  R+ YE L+YPD  +  L  + P      +   ERL+ E+ Y+ Y  RQ  +  
Sbjct: 494 INRDGVRRSGYELLAYPDVDVAWLARVEPGFGAVDAKTAERLETEAKYSVYLDRQKTDVA 553

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EGMTPAAL +++ +++
Sbjct: 554 QIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEGMTPAALAIIVAHVR 613

Query: 615 KN 616
            +
Sbjct: 614 HH 615


>gi|319409464|emb|CBI83113.1| glucose inhibited division protein A [Bartonella schoenbuchensis
           R1]
          Length = 622

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/611 (55%), Positives = 442/611 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA+ +A++GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREIDAL
Sbjct: 4   YDVIVVGGGHAGCEAASASARVGAKTALVTYQISELGTMSCNPAIGGLGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG+ ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q  +  QENL +I+ EV 
Sbjct: 64  GGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKRAIQGFLQKQENLKLIEDEVI 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +S + ++    I    VVLTTGTFLRG+IHIG     AGRMG+  S  L   
Sbjct: 124 DLIVENDHVSGVCLKKQGNIFSKAVVLTTGTFLRGLIHIGDKTWHAGRMGEQSSMQLAER 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             ++D   GRLKTGTP RL  KTI WD   KQ ADE  +PFSF+T+KI   QIEC ITRT
Sbjct: 184 LKEYDIKLGRLKTGTPPRLSKKTIRWDILPKQQADEYPVPFSFLTEKIEQPQIECAITRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FGER+GHQIFLEPEGL++D++
Sbjct: 244 NTQTHQIISENIHRSALYSGAIEGLGPRYCPSIEDKIIKFGERDGHQIFLEPEGLDSDII 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE+IQ  F++TI GLE + +++PGYAIEYD+++PK+L  TLE K + GLFL
Sbjct: 304 YPNGISTSLPEDIQISFLKTIEGLENITVLQPGYAIEYDFVDPKQLTRTLELKSLPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+AR+   L  I  SR+ +YIGVM+DDL S+GV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLLAGLNAARQVGGLKEIILSRSMAYIGVMVDDLVSRGVCEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  + G I + R   +    +  +  RS+ + L LT 
Sbjct: 424 MFTSRAEFRLSLRADNADARLTPLAQQWGIISDTRWNLYQHKQKCLDQARSICQKLFLTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              S+  +    DG  R+AY+ LSYP  +I+ L S  P  +   +  +E L+IE+ YA Y
Sbjct: 484 NEASAHGLHINHDGVRRSAYDLLSYPGMNIERLSSFWPQLQSIDAKTVETLEIEAQYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E+  IP   D  ++  LSNELK K+    P ++  A KI+GMTPAA
Sbjct: 544 LERQAQDIAVLQRDERLEIPASLDIQAISGLSNELKTKIQQSSPRSIADAQKIDGMTPAA 603

Query: 606 LNLLLIYIKKN 616
           L+L++  I++ 
Sbjct: 604 LSLIITSIQRQ 614


>gi|154245778|ref|YP_001416736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthobacter autotrophicus Py2]
 gi|154159863|gb|ABS67079.1| glucose inhibited division protein A [Xanthobacter autotrophicus
           Py2]
          Length = 626

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 439/599 (73%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAGCEAAA +A+ GA TAL+TH  STIG+MSCNPAIGGLGKGHLVREIDA
Sbjct: 11  AFDVIVVGGGHAGCEAAAASARTGARTALLTHSRSTIGAMSCNPAIGGLGKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD  GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  + +Q+ L +++GE 
Sbjct: 71  LDGLMGRVADQGGIQFRVLNRRKGPAVRGPRAQADRKLYAPAMQAALAAQDGLTIVEGEA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ + + D   + C  VVLTTGTFL G+IH+G++  PAGRMG+ P+  L  
Sbjct: 131 DDLLVAGGGIAGVRLADGRELSCGAVVLTTGTFLNGLIHMGEVSYPAGRMGEKPALGLSP 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTPARLDG+TI W   E Q  D+R  PFS +T  + NRQ+ECGITR
Sbjct: 191 ALARLGFSLGRLKTGTPARLDGRTIDWASLEMQPGDDRPEPFSALTTFLPNRQVECGITR 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  SA+YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 251 TTDATHELIRANLSRSAMYSGRIESSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDPT 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG+ST+LP E+Q  F+RTIPGLE+V ++RPGYAIEYD+++P+EL PTLE K+++GLF
Sbjct: 311 IYPNGLSTSLPAEVQTAFLRTIPGLEQVAVLRPGYAIEYDHVDPRELAPTLEAKRVAGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AG+N+AR++   D   F R ++Y+GVM+DDL ++GV EPY
Sbjct: 371 LAGQINGTTGYEEAAAQGLLAGLNAARRAGGADGTVFDRAEAYLGVMVDDLVTRGVSEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G  LG +G  R   FA+        R+L +SL LT
Sbjct: 431 RMFTSRAEYRLTLRADNADQRLTRHGEALGLVGAERSAHFARRSAALEEARALAESLSLT 490

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +S  +DG+ RTA++ L+YPD  +  L +I P        V E+++I++ YA 
Sbjct: 491 PTEGARHGLSVNRDGQRRTAFDLLAYPDIDMVRLGAIWPQLAGLDPAVAEQVEIDAKYAV 550

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +   ++ +E+  +P+D  Y+ LP LSNELK+KL+ ++P  + QA ++EGMTP
Sbjct: 551 YLHRQAADISMLRRDEQLSLPEDLSYADLPGLSNELKQKLARIRPRTVGQAGRMEGMTP 609


>gi|49476317|ref|YP_034358.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella henselae str. Houston-1]
 gi|81170522|sp|Q6G1K9|MNMG_BARHE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49239125|emb|CAF28429.1| Glucose inhibited division protein a [Bartonella henselae str.
           Houston-1]
          Length = 622

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/611 (56%), Positives = 441/611 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  +A+ GA TALITHK S +G+MSCNPAIGGLGKGHLVREIDA 
Sbjct: 4   YDVVVIGGGHAGCEAAYASARAGAQTALITHKISALGTMSCNPAIGGLGKGHLVREIDAF 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGR ADAAGIQFR+LN +KGPAVRGPR QADR+LY+ A+Q+ +  Q+NL +I+ EV 
Sbjct: 64  DGLMGRAADAAGIQFRLLNRRKGPAVRGPRAQADRQLYKEAIQKLLQKQDNLILIEDEVI 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS ++++   ++    VVLTTGTFL G IHIG     AGRMG+  S  L   
Sbjct: 124 DLIVKDKSISGVILKKQGILPSGAVVLTTGTFLNGFIHIGDKTWAAGRMGEQSSIKLAER 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              +  + GRLKTGTPARL  KTI W+   KQ ADE  +PFS +T+KI   QIEC ITRT
Sbjct: 184 LKSYGINLGRLKTGTPARLSKKTIRWECLPKQQADENPVPFSLLTEKIEQPQIECAITRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II ENI  SA+YSG+I+  GPRYCPSIEDKIV+FGER+GHQIFLEPEGLN D +
Sbjct: 244 NAQTHQIIRENIHRSALYSGNIEGLGPRYCPSIEDKIVKFGERDGHQIFLEPEGLNDDTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+ST+LPE++Q   ++TI GLE V I++ GYAIEYD++NP++L  TLE + + GLFL
Sbjct: 304 YPNGLSTSLPEDVQVSLLKTIEGLENVTILQSGYAIEYDFVNPQQLTKTLELRSLPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+ARK   LD I  SR+ +YIGVM+DDL S+GV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLLAGLNAARKVGGLDEILISRSTAYIGVMVDDLVSRGVCEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  +LG + + R + + K  Q  +  RSL + L LT 
Sbjct: 424 MFTSRAEFRLSLRSDNADARLTPLAQQLGIVSKLRWECYQKKQQRLDQARSLCQELFLTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              S+  +    DG  R+AY+ L+YP  SI+ L  I P  +   S  +E ++IE+ YA Y
Sbjct: 484 NQASAHGLQVNHDGIRRSAYDLLAYPHMSIERLSHIWPQLQSIDSKTVESVEIEAQYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             +Q  +   ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTPAA
Sbjct: 544 LEKQAQDILALQRDERLEIPSSLDVQAISGLSNELKTKIQKISPRSIADAQKIDGMTPAA 603

Query: 606 LNLLLIYIKKN 616
           L+L++ YI++ 
Sbjct: 604 LSLIITYIQRQ 614


>gi|49474828|ref|YP_032870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella quintana str. Toulouse]
 gi|81170523|sp|Q6FYB9|MNMG_BARQU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49240332|emb|CAF26814.1| Glucose inhibited division protein a [Bartonella quintana str.
           Toulouse]
          Length = 622

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/611 (55%), Positives = 442/611 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV++IGGGHAGCEAA+ +A+ GA TAL+THK S +G+MSCNPAIGGLGKGHLVREIDAL
Sbjct: 4   YDVVIIGGGHAGCEAASASARSGACTALVTHKISALGTMSCNPAIGGLGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  Q+NL +I+ E  
Sbjct: 64  DGLMGRAADIAGIQFRLLNRRKGPAVRGPRTQADRKLYKKAIQKFLQEQDNLILIEDEAV 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +S +V++    +    VVLTTGTFL G+IHIG     AGRMG+  S  L   
Sbjct: 124 DLIVKDNCVSGVVLKKQGELFSGAVVLTTGTFLNGLIHIGDKTWAAGRMGEHSSVQLAER 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K+D + GRLKTGTPARL  KTI W+   KQ ADE  +PFS +T+KI   QIEC ITRT
Sbjct: 184 LKKYDINLGRLKTGTPARLSKKTINWNCLSKQKADEDPVPFSLLTEKIEQPQIECAITRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II ENI  SA+YSG I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D +
Sbjct: 244 NTQTHQIIRENIHRSALYSGMIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDDTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+ST+LPE++Q   +RTI GLE V I++PGYAIEYD++NP++L  TLE + + GLFL
Sbjct: 304 YPNGLSTSLPEDVQVALLRTIEGLESVKILQPGYAIEYDFVNPQQLTKTLELRSLPGLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL S+GV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLLAGLNAARKVGGLNEIIISRSTAYIGVMVDDLVSRGVSEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  + G + ++R   + +  Q  +  RS+ + L LT 
Sbjct: 424 MFTSRAEFRLSLRSDNADARLTPLAQQWGIVSQKRWDLYQQKQQRLDQARSICQKLFLTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              S+  +    DG  R+AY+ L+YP  SI+ L       +      +E L+IE+ YA Y
Sbjct: 484 NQASAHGLQVNHDGIRRSAYDLLAYPHMSIERLSHFWQQLQSIDPKTVESLEIEAQYAVY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             +Q  +   ++ +E+  IP   D+ ++  LSNELK K+  + P ++  A KI+GMTPAA
Sbjct: 544 LEKQAQDISALQRDERLEIPSSLDFQTISGLSNELKTKIQKISPRSIADAQKIDGMTPAA 603

Query: 606 LNLLLIYIKKN 616
           L+L++ YI++ 
Sbjct: 604 LSLIITYIQRQ 614


>gi|110635799|ref|YP_676007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesorhizobium sp. BNC1]
 gi|123353088|sp|Q11CN3|MNMG_MESSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110286783|gb|ABG64842.1| glucose inhibited division protein A [Chelativorans sp. BNC1]
          Length = 622

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/583 (57%), Positives = 430/583 (73%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T +  TIG MSCNPAIGG+GKG LVRE+DALDGLMGRVADAAGIQFR+LN +KGPAVR
Sbjct: 32  LVTMRRDTIGVMSCNPAIGGIGKGQLVREVDALDGLMGRVADAAGIQFRLLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPRTQADR+LYR AMQ  I  QENL VI+ EV     E   I+ + +  +S I C+ VVL
Sbjct: 92  GPRTQADRKLYRQAMQAVISEQENLQVIEAEVHTLGMEHGRITHVGLSGDSQINCAAVVL 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IHIG+ KIPAGR+ +  +  L  S     F  GRLKTGTP RLDG+TI W+
Sbjct: 152 TTGTFLRGLIHIGQKKIPAGRVNEPAAKGLSASMEAAGFKLGRLKTGTPPRLDGRTIEWN 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
               Q ADE  +PFS +++KI N QI CGITRT  +THRII EN+  SA+YSG I+  GP
Sbjct: 212 MLGFQKADEDPVPFSLLSEKIQNPQITCGITRTTTDTHRIIQENLDKSAMYSGQIEGIGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FGER+GHQIFLEPEGL+   VYPNG+ST+LPEE+QH F++TIPGL   
Sbjct: 272 RYCPSIEDKIVKFGERDGHQIFLEPEGLDDHTVYPNGLSTSLPEEVQHAFLKTIPGLANA 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           ++++PGYAIEYD+++P+EL P+LET+++ GLFLAGQINGTTGYEEAAAQG++AGIN+A  
Sbjct: 332 HVLQPGYAIEYDHVDPRELEPSLETRRVRGLFLAGQINGTTGYEEAAAQGVIAGINAASV 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           ++    +  SRTD+YIGVMIDDL ++GV EPYRMFTSRAE+R+SLR DNAD RLTP  ++
Sbjct: 392 ASGSTTVVPSRTDAYIGVMIDDLVTRGVTEPYRMFTSRAEFRLSLRADNADERLTPRAIE 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
            G   + R+ RF K  QE +  R L K+  LT    +   I+  QDG  R+AY+ LS+ D
Sbjct: 452 WGVASKVRRDRFYKAEQELSDARELTKARGLTPNEAARHGIAVNQDGVRRSAYDLLSFAD 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
            +I+ L +I P+    +    ERL+ E+ YA Y  RQ+ +A+ ++ EE R IP   D+ S
Sbjct: 512 INIERLKAIWPELGSIAPKTCERLETEARYAVYLDRQVADAERVRREEGRSIPDGIDFDS 571

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P LSNELK KL   +P  L +A +I+GMTPAAL L+L+ I++
Sbjct: 572 VPGLSNELKYKLRQRRPRTLAEAQRIDGMTPAALALILVAIRQ 614


>gi|254459541|ref|ZP_05072957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium HTCC2083]
 gi|206676130|gb|EDZ40617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 619

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/603 (54%), Positives = 438/603 (72%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++DV+VIGGGHAGC+AA  +A++G+STAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKQLNFDVVVIGGGHAGCDAAHASARMGSSTALVTLSKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA DG+M RVAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M +EI +QENL ++
Sbjct: 61  EIDAFDGVMARVADKAGIQFRLLNRRKGPAVQGPRAQSDRSIYRGEMLKEIETQENLKIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE   F  E   +  + + D + + CS VVLTTGTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 EGEAVDFLMEGARVVGVALDDGTQLLCSAVVLTTGTFLRGVIHIGDVSKPGGRMGDKPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI WD  E Q  DE  + FSFM+  +T++Q+ C
Sbjct: 181 KLAERIDSFRLPFGRLKTGTPPRLDGRTINWDILESQPGDEDPVLFSFMSKGVTSQQVNC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN+ TH +I EN+K SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPEG+
Sbjct: 241 GITHTNMRTHVLIEENLKKSAMYGGHIDGIGPRYCPSIEDKIVRFADKTSHQVFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   VYPNGIST+LPE++Q+ +++TI GLE   I++PGYAIEYDY++P+ L   L  K +
Sbjct: 301 NDHTVYPNGISTSLPEDVQNAYVQTILGLEDAKILQPGYAIEYDYVDPRALDARLSVKGV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGLVAG+N+A +    D + FSRT+SYIGVMIDDLT++GV
Sbjct: 361 EGLFFAGQINGTTGYEEAAAQGLVAGLNAALEIQGRDPVIFSRTNSYIGVMIDDLTTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G++LGC+G +R+  F +   +   + S LK+
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTPLGIELGCVGYKRRLAFEEKKLQIASVVSALKA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            +LT K +++  IS  QDG  R   + L++PD   +++  + P+  +   ++ E+++ ++
Sbjct: 481 KLLTPKEINAGGISVNQDGNRRDGIQVLAFPDVKFEDVLDLFPELTETPRVIREQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +   +K +E + IPK FDY+++ +LSNELK+KL  ++P NL QA +++G
Sbjct: 541 LYSNYIARQQKDVDALKRDEAQNIPKGFDYTTIDSLSNELKQKLGQVQPMNLAQAGRVDG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|83944970|ref|ZP_00957336.1| glucose-inhibited division protein A [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851752|gb|EAP89607.1| glucose-inhibited division protein A [Oceanicaulis alexandrii
           HTCC2633]
          Length = 630

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/612 (55%), Positives = 425/612 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIVIGGGHAGCEAA+ +A+LGA T L+THK STIG MSCNPAIGGLGKGHLVRE+D
Sbjct: 11  RPWDVIVIGGGHAGCEAASASARLGARTLLLTHKASTIGEMSCNPAIGGLGKGHLVREVD 70

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVADA+GIQFR+LN  KGPAVRGPRTQ+DR+LYR AMQ+ +  Q NL +++  
Sbjct: 71  ALDGVMGRVADASGIQFRLLNRSKGPAVRGPRTQSDRKLYREAMQQALSEQANLSIVEAA 130

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E      ++       R   VVLTTGTFL+GVIH G  +IPAGR G++P+N L 
Sbjct: 131 AEDLIIENGRCCGVIDGAGRAYRAGAVVLTTGTFLKGVIHRGHERIPAGRHGEAPANGLS 190

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +        GRLKTGTPARLDG TI WD+ E Q ADE  +PFSF+ D+I  RQI CGIT
Sbjct: 191 ETLYGLGLRMGRLKTGTPARLDGSTIHWDQLEMQAADETPVPFSFLNDQIHVRQIACGIT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF +R+ HQ+FLEPEGL+ D
Sbjct: 251 RTTEATHKIIADNLDQSAVYGGAISGRGPRYCPSIEDKVVRFADRSQHQVFLEPEGLDDD 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP+ +Q  F++TIPGLE V + R GYAIEYDY++P+EL   LE K ++GL
Sbjct: 311 TVYPNGISTSLPDAVQDAFLKTIPGLEDVKVRRYGYAIEYDYVDPRELSAALEVKAMAGL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG N+A K++  D     R+++YIGVMIDDL ++GV EP
Sbjct: 371 FLAGQINGTTGYEEAAAQGLMAGFNAALKASGSDPFILDRSEAYIGVMIDDLITRGVTEP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR DNAD RLT   + LG     R+  + +   +    R    +L L
Sbjct: 431 YRMFTSRAEYRLTLRADNADQRLTDKAIALGAASVSRETSWRQRQADLARAREQATTLTL 490

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        I   +DGK R+  E LSYPD    ++  I P+  +    V E+++I++ Y 
Sbjct: 491 TPAEAKRHGIKVNEDGKRRSVMELLSYPDIGWSDMVRIWPELGEIKPRVAEQVEIDAVYH 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    + +E   IP DFDY+ +  LSNE++EKL    P  L QA++IEG+TP
Sbjct: 551 GYLDRQQSDILAFRRDEGVRIPADFDYAQVGGLSNEVREKLIKASPDTLGQAARIEGVTP 610

Query: 604 AALNLLLIYIKK 615
            AL  LL Y+K+
Sbjct: 611 GALTALLAYLKR 622


>gi|295691565|ref|YP_003595258.1| glucose inhibited division protein A [Caulobacter segnis ATCC
           21756]
 gi|295433468|gb|ADG12640.1| glucose inhibited division protein A [Caulobacter segnis ATCC
           21756]
          Length = 618

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/615 (54%), Positives = 439/615 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSKSWDVIVIGGGHAGCEAAAASARTGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR+LYR AMQ E+ S  NLD+I 
Sbjct: 61  IDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRKLYREAMQAELFSTGNLDIIA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   ++  +  +    R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+  
Sbjct: 121 AAAEDLIVEDGKVAGAMDGEGRTYRAPRVILTTGTFLKGVIHRGEERIPAGRVGDQPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTPARLDG+TI WD+ + Q AD+  +PFS++ DKI   QI CG
Sbjct: 181 LSDRLYGLGFQMGRLKTGTPARLDGRTIAWDRLDSQAADDEPVPFSYLNDKIDVPQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL+
Sbjct: 241 VTFTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST++ EE Q  F+RTIPGLE V ++R GYAIEYDY++P+EL+ TLETK++ 
Sbjct: 301 DPTVYPNGISTSVSEETQLLFLRTIPGLETVEVLRYGYAIEYDYVDPRELYATLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A      + + F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLVAGLNAALAEQGREPVVFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R++LR DNAD RLT  G+ LG +GERR   +A+        R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLTLRADNADQRLTDRGVALGVVGERRATAWAEKKARLEAARAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT             DG  R  +  L+YPD ++ +L  + P+   +++ V E+++IE++
Sbjct: 481 SLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRVWPEVFTWNTDVREQIEIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++EKL+ ++P  L QA++IEG+
Sbjct: 541 YAGYLDRQRADAESLRKDEDLRLPADLDYADIGSLSNEVREKLARVRPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKKN 616
           TP AL  LL ++++ 
Sbjct: 601 TPGALTALLAHVRRT 615


>gi|154251727|ref|YP_001412551.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parvibaculum lavamentivorans DS-1]
 gi|171769576|sp|A7HSL1|MNMG_PARL1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154155677|gb|ABS62894.1| glucose inhibited division protein A [Parvibaculum lavamentivorans
           DS-1]
          Length = 618

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/615 (55%), Positives = 437/615 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R +DVIVIGGGHAGCEAA+ AA+ GA TALITHK +TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTRDFDVIVIGGGHAGCEAASAAARAGARTALITHKLATIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVAD AGIQFR+LN +KGPAVRGPR QADR+LYR AMQ  IL+  NL+VI+
Sbjct: 61  VDALDGLMGRVADQAGIQFRLLNRRKGPAVRGPRAQADRKLYRAAMQEAILNHRNLEVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V+    E   ++ ++ +D    R   VVLTTGTFLRGVIH+G  +IPAGR+G++P+  
Sbjct: 121 GGVSDLIVEDGHVAGVIAEDGRQFRARRVVLTTGTFLRGVIHLGTQRIPAGRVGEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTP RL G +I W   E Q  D+  +PFSF+T +IT  Q+ C 
Sbjct: 181 LSDRLYGLGFQLGRLKTGTPPRLAGDSIDWSSLEVQPGDDPPVPFSFLTTEITTPQVPCH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  E HRII +N+  S +YSG I+  GPRYCPSIEDK+VRF ER+ HQIFLEPEGL+
Sbjct: 241 ITRTTAEGHRIIEDNLHVSPVYSGQIEGVGPRYCPSIEDKVVRFRERDSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +YPNGISTALPEE+Q  F++TIPGLE V + R GYAIEYDYI+P+EL PTLETK++ 
Sbjct: 301 DDTIYPNGISTALPEEVQLAFLKTIPGLENVVMRRAGYAIEYDYIDPRELRPTLETKRLG 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AG+N+A      +     R  +Y+GVM+DDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLIAGLNAALAERGAEPFILDRAQAYMGVMVDDLITRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+  G +GERR   +    +     R L   L
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTAAGIGAGVVGERRVMAYEAKARALEAARVLCDGL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L+   L+   +   QDG  RTA + L+YPD     L  + P+       + E++ IE+ 
Sbjct: 481 RLSPTELARRGLKVNQDGVARTAMDLLAYPDIDAGVLAGVWPELAALEPHIAEQMGIEAQ 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + K  + +E   +P + DY+S+  LS+E+++KL+  +P  L QA++++G+
Sbjct: 541 YAGYLDRQDADIKAFRRDEGLRLPAEIDYASVLGLSHEVRQKLAKARPATLGQAARVDGV 600

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL  L+I++K+ 
Sbjct: 601 TPAALTTLMIHVKQK 615


>gi|146337362|ref|YP_001202410.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bradyrhizobium sp. ORS278]
 gi|205831491|sp|A4YJT4|MNMG_BRASO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146190168|emb|CAL74160.1| Glucose-inhibited division protein A [Bradyrhizobium sp. ORS278]
          Length = 624

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/612 (55%), Positives = 438/612 (71%), Gaps = 1/612 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAAA +A++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 6   SYDVIVIGGGHAGCEAAAASARMGARTALVTHRFATIGAMSCNPAIGGLGKGHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I    NL V++GE 
Sbjct: 66  LDGLMGRVADAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQSAIRETTNLAVVEGEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ I + D   + C  VV+TTGTFLRG+IH+G+   PAGR+G++P+  L  
Sbjct: 126 DDLIVVDGRVTGIKLADGRSLACGAVVITTGTFLRGLIHLGEKTWPAGRVGEAPALGLSR 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F+ GRLKTGTP RLDG TI W   E Q  D+   PFS +T+ IT  QI+CGITR
Sbjct: 186 SLEAIGFNLGRLKTGTPPRLDGTTIDWGAVEMQTGDDPAEPFSVLTETITTPQIQCGITR 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T + TH +I  N+  S +YSG IKS GPRYCPS+EDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 246 TTIATHEVIRANVHRSPMYSGQIKSTGPRYCPSVEDKIVRFGDRDGHQIFLEPEGLDDST 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE+V +IRPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 306 VYPNGISTSLPEEVQLALLPTIPGLERVRMIRPGYAIEYDHVDPRELEPTLQTKRMKGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAGIN+A  +     I F R D Y+GVMIDDL ++G+ EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLVAGINAALAAGGGAPIVFDRADGYLGVMIDDLVTRGITEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +   + +      R++  SL +T
Sbjct: 426 RMFTSRAEYRLTLRADNADQRLTDKGIALGCVGGERVRFHRRKLAALQAARAVATSLTIT 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A+E ++YP+     + SI P+      +V   L+I++ Y  
Sbjct: 486 PNEAAKHGLTLNRDGQRRSAFELMAYPEIDFAKVRSIWPELEAIDPVVATHLEIDAKYDV 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E  L+  D DY+ +P LSNE + KL+  KP+ + QA +I+GMTPA
Sbjct: 546 YVRRQSEDVDAFRRDEG-LVLGDIDYAIVPGLSNEARAKLTAAKPWTIGQAGRIDGMTPA 604

Query: 605 ALNLLLIYIKKN 616
           AL +L  Y+++ 
Sbjct: 605 ALGILAAYLRRE 616


>gi|254292377|ref|YP_003058400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hirschia baltica ATCC 49814]
 gi|254040908|gb|ACT57703.1| glucose inhibited division protein A [Hirschia baltica ATCC 49814]
          Length = 620

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/615 (54%), Positives = 441/615 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  +DVI++GGGHAG EAA+ AA+ GA+TALITHK STIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MNLDFDVIIVGGGHAGVEAASAAARAGANTALITHKASTIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD +GIQFR+LN  KGPAV+GPRTQADR+LYR A+Q  + +Q+NL VI+
Sbjct: 61  IDALDGIMGRAADVSGIQFRLLNRSKGPAVQGPRTQADRKLYRNAVQAAVKAQKNLTVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E +++S +V +  ++ +   VVLTTGTFL G+IH G+ +IPAGR+GD P+  
Sbjct: 121 DGIDDLTFENDVLSGVVGESGTIYKSKAVVLTTGTFLDGIIHRGEERIPAGRIGDQPAKE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D D GRLKTGTPARLD  +I W + E Q AD+  +PFSF+TDKIT  QIECG
Sbjct: 181 LSKRLYSLDLDMGRLKTGTPARLDKNSIDWSQLEMQPADDDPVPFSFLTDKITVPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +NI  SA+YSG I   GPRYCPSIEDK+ RF +RN HQIFLEPEGL+
Sbjct: 241 MTYTNEETHKVINDNISKSAVYSGAIAGKGPRYCPSIEDKVTRFADRNQHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D+VYPNGIST+LP ++Q +F+RT+ GLE V +++ GYAIEYDY++P+EL   L+ KK+ 
Sbjct: 301 DDLVYPNGISTSLPADVQDKFLRTMKGLENVKVVQYGYAIEYDYVDPRELKADLQLKKVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGL+AG+N+AR +  L+ +   R+ +YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLMAGVNAARSTQGLEPVVLDRSQAYIGVMIDDLVTRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP   +   I E R+  F   +      R LL+ L
Sbjct: 421 EPYRMFTSRAEYRLSLRADNADQRLTPFADEWNIISEDRRSAFNNKLNALQHGRELLQRL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   QDG+ R+AYE L++P    + L    P+    S  V E+L IE+ 
Sbjct: 481 AMTPNEATDIGVKITQDGRRRSAYEMLAFPHVEYETLAKKWPELLDLSKQVQEQLSIEAI 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + +  + +E+  + +  DY  +  LS+E++ KL ++KP  L QAS+IEG+
Sbjct: 541 YATYLDRQKADIESFQKDERLKLSETLDYKLVGGLSHEVRSKLELIKPITLGQASRIEGV 600

Query: 602 TPAALNLLLIYIKKN 616
           TP A+  LL Y+KK+
Sbjct: 601 TPGAITALLAYVKKS 615


>gi|294675620|ref|YP_003576235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter capsulatus SB 1003]
 gi|294474440|gb|ADE83828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter capsulatus SB 1003]
          Length = 620

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/613 (54%), Positives = 435/613 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A+LGA T L+T +   IG MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   KHFDVIVVGGGHAGTEAAHASARLGARTVLVTMRREAIGVMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+MG+ AD AGIQFR+LN +KGPAV+GPRTQADR+LYRLA+     +Q  LDV++GE
Sbjct: 62  AMDGVMGKAADRAGIQFRLLNRRKGPAVQGPRTQADRKLYRLAIAELCATQPLLDVVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         IS + + D S I   +VVLTTGTFL GVIHIG  + P GR+GD PS  L 
Sbjct: 122 VTDLLLAGTTISGVRLMDGSEIFAPSVVLTTGTFLNGVIHIGDQQSPGGRVGDRPSVPLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG++I WD  EKQ  DE  +  SF++     RQI CGIT
Sbjct: 182 QRLREIAPAVGRLKTGTPPRLDGRSIDWDSLEKQPGDEDPVMLSFLSTGPFVRQIACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I EN++ SA+Y G I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+ D
Sbjct: 242 HTNESTHEVIRENLQRSAMYGGHIEGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q +++++I GLE+  I++PGYAIEYDY++P+ L  TLE +   GL
Sbjct: 302 TVYPNGISTSLPADVQERYVQSIRGLERARILQPGYAIEYDYVDPRALKLTLELRDQEGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAG+N+A K+ + D + FSRTDSYIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGMVAGLNAASKALRRDPVTFSRTDSYIGVMIDDLVSRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP G+++GC+GE RQ+RF + +++    + +L  +VL
Sbjct: 422 YRMFTSRAEFRLFLRADNADQRLTPRGVEIGCVGEERQRRFDEKMEKMAAGKGILDGIVL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T     S  ++  QDG  R+A++ L++PD +   L    PD    +  +  +L IE+ YA
Sbjct: 482 TPGQAISLGLALNQDGVKRSAFQLLAFPDVTFGQLRESFPDLNAIAPDIATQLSIEALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP DFDY +L  LSNELK K S   P  L QAS+++G TP
Sbjct: 542 NYILRQQRDVDAMRRDENWEIPADFDYGALSGLSNELKMKFSAAAPRTLHQASQVDGATP 601

Query: 604 AALNLLLIYIKKN 616
           AAL+L+L  +++ 
Sbjct: 602 AALSLILARLRQT 614


>gi|254472179|ref|ZP_05085579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudovibrio sp. JE062]
 gi|211958462|gb|EEA93662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudovibrio sp. JE062]
          Length = 627

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/611 (57%), Positives = 458/611 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAGCEAAA AA++GA TALITH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVVVIGGGHAGCEAAAAAARMGAHTALITHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVADA+GIQFR+LN +KGPAV+GPR+QADR+LYR AMQ EI +  NL+V++GE  
Sbjct: 69  DGLMGRVADASGIQFRMLNRRKGPAVQGPRSQADRKLYREAMQAEIKAIANLEVVEGEAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +I+  IV+ D   +    VV+TTGTFLRG+IHIG  +IPAGR G++P+  L  S
Sbjct: 129 KLIREGDILKGIVLGDGRQVSAKAVVITTGTFLRGLIHIGDKQIPAGRDGEAPALGLSVS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGTPARLDG+TI WD  ++Q  DE  IPFS +TD+I  RQ+ C ITRT
Sbjct: 189 LEEIGLRLGRLKTGTPARLDGRTINWDILQQQPGDEEPIPFSTLTDEIQIRQVPCYITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH+II +NIK SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQ+FLEPEGL    V
Sbjct: 249 TPETHKIIRDNIKRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQVFLEPEGLGDPTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q +F+RTIPGLEKV   +P YAIEYD+I+P EL  TLE KK  GL+L
Sbjct: 309 YPNGISTSLPEDVQIEFLRTIPGLEKVEYFKPAYAIEYDHIDPTELTNTLEVKKQKGLYL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR +     +   R D YIGVM+DDL ++GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARTAQDGAPVTVGRADGYIGVMVDDLITRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR++LR DNAD RLTP+G++ GCIG+ R+  F   +++    + L++S+ +T 
Sbjct: 429 MFTSRAEYRLTLRADNADQRLTPLGIEWGCIGDTRRVAFETKMEKLRKTKDLMQSVKITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+A++ L+YP+ ++++L  I  + +     V E++ I++ YA Y
Sbjct: 489 NEGRKKGLPINQDGVKRSAFDLLAYPNITLKDLMGIFDELKDLDLKVAEQVSIDAMYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + + +K +E  +IP+  DY++L  LSNE+++KL  ++P  + QAS+++G+TPAA
Sbjct: 549 LERQAADIEALKRDEDLVIPEWIDYAALTGLSNEVRQKLEAVRPSTIGQASRMDGITPAA 608

Query: 606 LNLLLIYIKKN 616
           L LLL YI+++
Sbjct: 609 LTLLLAYIRRS 619


>gi|114571502|ref|YP_758182.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Maricaulis maris MCS10]
 gi|122314957|sp|Q0AKE9|MNMG_MARMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114341964|gb|ABI67244.1| glucose inhibited division protein A [Maricaulis maris MCS10]
          Length = 619

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/614 (55%), Positives = 430/614 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAGC+AAA +A+LGA T L+THK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 2   QTWDVIVIGGGHAGCDAAAASARLGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVADA+GIQFR+LN  KGPAVRGPRTQ+DR LYR AMQ E+  Q NL++    
Sbjct: 62  ALDGVMGRVADASGIQFRLLNRSKGPAVRGPRTQSDRALYRTAMQSELSGQANLEIRAAA 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     E       +  D        VVLTTGTFLRG+IH G  +IPAGR G++PS  L 
Sbjct: 122 IEDLMFEGERCVGAMDADGHAYHAVAVVLTTGTFLRGLIHKGAERIPAGRAGEAPSIGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++    +   GRLKTGTPARL   TI WD  E+Q AD+  +PFSFMTD+I   QI C +T
Sbjct: 182 DTLYGLNLQMGRLKTGTPARLLKSTIDWDSLEQQAADDVPVPFSFMTDRIEVHQISCAVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH+II +N+  SA+YSG I   GPRYCPSIEDK+VRF +R+ HQIFLEPEGL+ D
Sbjct: 242 RTTEATHKIIADNLGQSAVYSGAIAGRGPRYCPSIEDKVVRFADRSQHQIFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP+++Q  F+ TIPGLE+V + R GYAIEYDY++P+EL  TL+ +K +GL
Sbjct: 302 TVYPNGISTSLPDDVQQAFLETIPGLEQVVVKRYGYAIEYDYVDPRELDATLQLRKRAGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG N+A  +   +    SR+D+YIGVMIDDL ++GV EP
Sbjct: 362 WLAGQINGTTGYEEAAAQGLVAGANAALFATGREPFVLSRSDAYIGVMIDDLITRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLTP  M+LG     R   F + ++E +  RSL  +L L
Sbjct: 422 YRMFTSRAEYRLSLRADNADQRLTPKAMELGLASRGRGAVFCRKMEELSEARSLASNLSL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +S   DGK R   E L+YPD     L  I P+  + S  V E+++I++ YA
Sbjct: 482 TPNEARDKGLSVNADGKRRAVTELLAYPDVGWDRLVGIWPELGRVSPSVSEQIEIDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    + +E   +P+D DYS +  LSNE +EKL   +P  L QA++IEG+TP
Sbjct: 542 GYIDRQQADILAFRRDEAVRLPRDLDYSGIGGLSNEAREKLERARPETLGQAARIEGVTP 601

Query: 604 AALNLLLIYIKKNT 617
            AL  +L ++K+ T
Sbjct: 602 GALTAVLAHVKRRT 615


>gi|182678269|ref|YP_001832415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|205831489|sp|B2IJQ4|MNMG_BEII9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|182634152|gb|ACB94926.1| glucose inhibited division protein A [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 618

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/611 (55%), Positives = 445/611 (72%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+GGGHAGCEAAA +A+LGA TAL+T   +TIGSMSCNPAIGGLGKGHLVREIDA
Sbjct: 4   TYDVVVVGGGHAGCEAAAASARLGARTALVTQAFATIGSMSCNPAIGGLGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFRVLN  KGPAVRGPR QADR+LYR AMQ EI +   LDVI+GE 
Sbjct: 64  LDGLMGRVADAAGIQFRVLNRAKGPAVRGPRAQADRKLYRAAMQAEIQAVNGLDVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   +   I+ +++   ++  C+ VVLTTGTFLRG+IHIG+ ++ AGR+G++P+ ++  
Sbjct: 124 EGLCFDGEKIAGVLVGVETLA-CAAVVLTTGTFLRGLIHIGEKQVRAGRIGEAPAEAMGL 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +        GRLKTGTPARLDG++I W + E+Q  D    PFSF+T+ IT  Q++C IT 
Sbjct: 183 ALEALGLSMGRLKTGTPARLDGRSIDWSRLERQSGDVEPEPFSFLTEAITRPQVDCFITT 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH +I EN+ +S +YSG I   GPRYCPSIEDK+VRF +R  HQIFLEPEGL+   
Sbjct: 243 TTPETHAVIRENLHYSPVYSGAINGRGPRYCPSIEDKVVRFADREAHQIFLEPEGLDVPT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGISTALPE +Q +F+RTIPGLE V I++ GYAIEYDY++P+EL   LE K++ GLF
Sbjct: 303 IYPNGISTALPESVQERFLRTIPGLEHVAILQHGYAIEYDYVDPRELTAGLEVKRVPGLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+A ++  L  I F R+++Y+GVMIDDL ++GV EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLIAGLNAAARAGGLAPITFDRSEAYLGVMIDDLINRGVSEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  GM LGCIG++R + F    +  N  R LL  L L+
Sbjct: 423 RMFTSRAEYRLTLRADNADQRLTGKGMILGCIGQQRAEIFKAKSEALNSARDLLAGLSLS 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +   +DG  RTA++ L+ PD +++ L SI P+ +     +  +++I++ YA 
Sbjct: 483 PTEATRHGLKVNRDGVRRTAFDLLALPDVTLETLRSIWPELKTIPETIAAQIEIDAHYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E   +P D DY+S+  LSNE++ +L+ ++P  L QA +IEGMTP 
Sbjct: 543 YLDRQEADIAAFRRDEGLALPTDLDYASMQGLSNEIRGRLAAIRPATLGQAGRIEGMTPT 602

Query: 605 ALNLLLIYIKK 615
           AL LL   +++
Sbjct: 603 ALTLLAARVRR 613


>gi|319899517|ref|YP_004159614.1| glucose inhibited division protein A [Bartonella clarridgeiae 73]
 gi|319403485|emb|CBI77065.1| glucose inhibited division protein A [Bartonella clarridgeiae 73]
          Length = 622

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/616 (55%), Positives = 437/616 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARIGAQTALVTYQISKLGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN +KGPAVRGPRTQ DR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQVDRQLYKNKIQQLLQKQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +S   ++    I  + VVLTTGTFLRG+IHIG     AGRMG+  S  L 
Sbjct: 122 VIDLIIKDGRVSGAFLKKQGNIYSNAVVLTTGTFLRGLIHIGNKTWSAGRMGEQSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPAR   KTI W+K  KQ ADE  +PFS +T+KI   QIEC IT
Sbjct: 182 ERLKNYGINLGRLKTGTPARFSKKTISWNKLLKQQADEDPVPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+ D
Sbjct: 242 RTNKKTHQIIRENIHKSALYSGVIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLDND 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE+IQ  F+RTI GLE V I++PGYAIEYD+++P++L   LE + + GL
Sbjct: 302 TIYPNGISTSLPEDIQISFLRTIEGLENVEILQPGYAIEYDFVDPRQLSRNLELRFLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   L+ I  SR+ +YIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLEEIILSRSTAYIGVMIDDLISRGVREP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G I + R   + +  Q  +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADARLTPLAKQWGIISQTRWVCYQQKQQRLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S   +    DG  R+AY+ L+ P  S+  L    P      S  +E L+IE+ YA
Sbjct: 482 TPNEASVHGLQINNDGIRRSAYDLLARPHMSVARLAHFWPQLHSIDSKTVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E+  IP   ++  +  LSNELK K   + P ++  A KI+GMTP
Sbjct: 542 VYLERQAQDIMALQRDERLEIPSSLNFQEISGLSNELKAKFQQISPRSIADAKKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVK 619
           AAL+L+L YI++   K
Sbjct: 602 AALSLILTYIQRQRHK 617


>gi|163757464|ref|ZP_02164553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hoeflea phototrophica DFL-43]
 gi|162284966|gb|EDQ35248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hoeflea phototrophica DFL-43]
          Length = 622

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/598 (58%), Positives = 440/598 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A++G  T L+THK  +IG MSCNPAIGGLGKGHLVRE+DA+
Sbjct: 3   YDVIVIGGGHAGSEAAAASARMGVRTVLVTHKRKSIGVMSCNPAIGGLGKGHLVREVDAM 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG  AD +GIQFR+LN +KGPAV GPRTQADR+LY+ ++Q ++ + +NLDVI+ E  
Sbjct: 63  GGLMGLAADQSGIQFRMLNRRKGPAVWGPRTQADRKLYKASIQAQLSAIDNLDVIEAEAD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   +    + +V++D   I C  VVLTTGTFLRG+IHIG  +IPAGRM ++P+    N 
Sbjct: 123 GLVQDGQGPTHVVLKDGRQIGCKAVVLTTGTFLRGLIHIGDQRIPAGRMNEAPALGFSNV 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F+ GRLKTGTPARLDGKTI WD+   Q AD   IPFSFMTD I   QI CGITRT
Sbjct: 183 LENAGFELGRLKTGTPARLDGKTIDWDQVGWQEADAEPIPFSFMTDHIEVPQIRCGITRT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D V
Sbjct: 243 TAATHKIIQDNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDTV 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+ST+LPEE+Q  F+R+IPGL+ V II+PGYAIEYD+++P+EL  TLET++I GLFL
Sbjct: 303 YPNGVSTSLPEEVQEAFLRSIPGLQDVRIIQPGYAIEYDHVDPRELSHTLETRRIPGLFL 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+N+A      +   FSRT+SYIGVMIDDLT+KGV EPYR
Sbjct: 363 AGQINGTTGYEEAAAQGLVAGLNAALLVQGRESCLFSRTNSYIGVMIDDLTTKGVSEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNA+ RLTP+ ++LGC+   R ++ A Y    +   + L +  LT 
Sbjct: 423 MFTSRAEYRLSLRADNAEQRLTPLAIELGCLSSERVEKSATYFDSLSKCLADLNARNLTP 482

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +S  IS  QDG  R+A++ LSYP+ S++ + S+ PD   +   V+    ++++YA Y
Sbjct: 483 NQAASRGISLNQDGLRRSAFQLLSYPEVSLEQILSVWPDLEVYGDKVLAAAAVDAAYAVY 542

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +  + + EE R IP DFDY  L  LSNELK+KL   +P ++  A +IEGMTP
Sbjct: 543 LDRQQQDIAQRQKEEARAIPADFDYGVLNGLSNELKQKLERFRPPSIGHAERIEGMTP 600


>gi|167648979|ref|YP_001686642.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Caulobacter sp. K31]
 gi|189039333|sp|B0T6E1|MNMG_CAUSK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167351409|gb|ABZ74144.1| glucose inhibited division protein A [Caulobacter sp. K31]
          Length = 618

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/614 (54%), Positives = 439/614 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ ++DVIVIGGGHAGCEAA+ +A+ GA T L+THK  T+G MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSNTWDVIVIGGGHAGCEAASASARAGARTLLLTHKRETVGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR+ D AGIQ+R+LN  KGPAVRGPR+Q DR+LYR AMQ E+ S  NLDV+ 
Sbjct: 61  IDALDGLMGRIGDKAGIQYRLLNRSKGPAVRGPRSQIDRKLYREAMQAELFSHVNLDVVA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++  +  + ++ R   VVLTTGTFL+GVIH G+++I AGR+GD+PS  
Sbjct: 121 IAVEDLIVEDGVVAGAIDGEGAIYRAPRVVLTTGTFLKGVIHQGEIRISAGRVGDAPSIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      FD GRLKTGTPARLDGKTI WD+ E Q ADE+  PFSF+T +I   QI+CG
Sbjct: 181 LADRLYALGFDMGRLKTGTPARLDGKTIAWDRLEMQAADEQPEPFSFLTTRIDVPQIQCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T  ETH+II E +  SA+Y G     GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+
Sbjct: 241 ITYTTAETHKIIAERLGESAVYGGRATGIGPRYCPSIEDKVVRFADKTSHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNG+ST++  E Q  F+RT+PGLE V +IR GYAIEYDY++P+EL+PTLETK++ 
Sbjct: 301 DDTVYPNGVSTSVSAETQLLFLRTMPGLENVEVIRYGYAIEYDYVDPRELYPTLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGL+AG+N+A      +   F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLMAGLNAALAVQGREPAVFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT  G+ LGC+G  R + +A    E   +R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLILRADNADQRLTDRGLALGCVGSVRAEAWAAKKAELEAVRAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT    + T      DG+ R     L+ P+ ++  L ++ P    +S +  E++ IE++
Sbjct: 481 TLTPAEANRTGFKVNHDGQRRDVLAMLALPEVTLDRLATVWPQISTWSPMAREQIAIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + +  + EE   +P D DY  + +LSNE++EKL+ +KP  L QA++IEG+
Sbjct: 541 YAGYLDRQRDDVEAFRREEDLRLPADLDYGLVGSLSNEVREKLARVKPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKK 615
           TP AL  LL ++++
Sbjct: 601 TPGALTALLAHVRR 614


>gi|16127985|ref|NP_422549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caulobacter crescentus CB15]
 gi|221236807|ref|YP_002519244.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caulobacter crescentus NA1000]
 gi|13425529|gb|AAK25717.1| glucose inhibited division protein A [Caulobacter crescentus CB15]
 gi|220965980|gb|ACL97336.1| glucose inhibited division protein A [Caulobacter crescentus
           NA1000]
          Length = 640

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/616 (54%), Positives = 436/616 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVR
Sbjct: 22  VLSKSWDVIVIGGGHAGCEAAAASARAGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVR 81

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR LYR AMQ E+ S  NLD+I
Sbjct: 82  EIDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRRLYREAMQAELFSTGNLDII 141

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E   ++  V       R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+ 
Sbjct: 142 AAAAEDLIVEDGKVAGAVDAAGQAYRAPRVILTTGTFLKGVIHRGEDRIPAGRVGDQPAI 201

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +      F  GRLKTGTPARLDGKTI WD+ E Q AD+  +PFS++  +I   QI C
Sbjct: 202 GLSDRLYGLGFQMGRLKTGTPARLDGKTIAWDRLESQAADDTPVPFSYLNHRIDVPQIAC 261

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 262 GVTYTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGL 321

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST++ EE Q  F+RTIPGLE+V +IR GYAIEYDY++P+EL+PTLETK++
Sbjct: 322 DDDTVYPNGISTSVSEETQLLFLRTIPGLEQVEVIRYGYAIEYDYVDPRELYPTLETKRL 381

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEA AQGLVAG+N+A      +   F+R ++YIGVMIDDL ++GV
Sbjct: 382 PGLYLAGQINGTTGYEEAGAQGLVAGLNAALAVQGREPAIFARDEAYIGVMIDDLVTRGV 441

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R++LR DNAD RL+  G+ LG +G  R   + +     +  R+  +S
Sbjct: 442 TEPYRMFTSRAEFRLTLRADNADQRLSDRGISLGVVGPVRAAAWTEKKARLDAARAFARS 501

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + LT             DG  R  +  L+YPD ++ +L  I P+   +++ V E+++IE+
Sbjct: 502 VTLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRIWPEVFTWNTDVREQIEIEA 561

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++ KL+ ++P  L QA++IEG
Sbjct: 562 AYAGYLDRQRADAESLRKDEDLRLPADLDYAEIGSLSNEVRGKLARVRPLTLGQAARIEG 621

Query: 601 MTPAALNLLLIYIKKN 616
           +TP AL  LL ++++ 
Sbjct: 622 VTPGALTALLAHVRRG 637


>gi|27375744|ref|NP_767273.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bradyrhizobium japonicum USDA 110]
 gi|81170530|sp|Q89WP5|MNMG_BRAJA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27348882|dbj|BAC45898.1| glucose inhibited division protein A [Bradyrhizobium japonicum USDA
           110]
          Length = 626

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/620 (54%), Positives = 441/620 (71%), Gaps = 1/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA +A++GA+TAL+TH+ ST+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SFDVIVIGGGHAGCEAAAASARMGAATALVTHRFSTVGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRV DA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I   E L VI+GE 
Sbjct: 67  LDGLMGRVGDAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQAAIRETEGLSVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +  ++ + + D       ++V+TTGTFLRG+IH+G+   PAGR+G++P+  L +
Sbjct: 127 DELIVVEGRVTGLRLADGREFGAGSIVVTTGTFLRGLIHLGEKNWPAGRVGEAPAMGLSS 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF +  F  GRLKTGTP RLDG TI W   E Q  DE   PFS MTD+IT  QI+CGITR
Sbjct: 187 SFERAGFTLGRLKTGTPPRLDGTTIDWSAVEMQPGDEPPEPFSVMTDRITTPQIQCGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG IKS GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 247 TTAATHEVIRANVHRSPMYSGQIKSSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDST 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + +IPGLE+V ++RPGYAIEYD+I+P+EL PTL+TK++ GLF
Sbjct: 307 VYPNGISTSLPEEVQLAILASIPGLERVKMVRPGYAIEYDHIDPRELDPTLQTKRLRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG+VAG+N+A  ++      F R D Y+GVMIDDL ++G+ EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGIVAGLNAALAASGAALTVFDRADGYLGVMIDDLVTRGISEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+   R       ++  N  R+L KSL +T
Sbjct: 427 RMFTSRAEYRLTLRADNADQRLTEKGIALGCVRSARTLHHRTKMEALNAARTLSKSLTIT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +S  +DG+ R+A+E ++YPD     + +I  +      ++   L+I++ Y  
Sbjct: 487 PNEAIKHGLSLNRDGQRRSAFELMAYPDIGWSQVRAIWLELSAIDPVIATHLEIDAKYDV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L+  + DY  +P LSNE++ KL   +PF + QA +I+GMTPA
Sbjct: 547 YLERQSADVEAFRRDEG-LVLSEVDYQLVPGLSNEVRAKLEKARPFTVGQAGRIDGMTPA 605

Query: 605 ALNLLLIYIKKNTVKLNEIV 624
           AL +L  Y+++   K ++ +
Sbjct: 606 ALGILAAYLRREARKTSKAI 625


>gi|239977503|sp|P0CAV0|MNMG_CAUCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|239977561|sp|B8GW33|MNMG_CAUCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|5174778|gb|AAD40695.1| GidA [Caulobacter crescentus CB15]
          Length = 618

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/615 (54%), Positives = 435/615 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSKSWDVIVIGGGHAGCEAAAASARAGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR LYR AMQ E+ S  NLD+I 
Sbjct: 61  IDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRRLYREAMQAELFSTGNLDIIA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   ++  V       R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+  
Sbjct: 121 AAAEDLIVEDGKVAGAVDAAGQAYRAPRVILTTGTFLKGVIHRGEDRIPAGRVGDQPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTPARLDGKTI WD+ E Q AD+  +PFS++  +I   QI CG
Sbjct: 181 LSDRLYGLGFQMGRLKTGTPARLDGKTIAWDRLESQAADDTPVPFSYLNHRIDVPQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL+
Sbjct: 241 VTYTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNGIST++ EE Q  F+RTIPGLE+V +IR GYAIEYDY++P+EL+PTLETK++ 
Sbjct: 301 DDTVYPNGISTSVSEETQLLFLRTIPGLEQVEVIRYGYAIEYDYVDPRELYPTLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A      +   F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLVAGLNAALAVQGREPAIFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R++LR DNAD RL+  G+ LG +G  R   + +     +  R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLTLRADNADQRLSDRGISLGVVGPVRAAAWTEKKARLDAARAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT             DG  R  +  L+YPD ++ +L  I P+   +++ V E+++IE++
Sbjct: 481 TLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRIWPEVFTWNTDVREQIEIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++ KL+ ++P  L QA++IEG+
Sbjct: 541 YAGYLDRQRADAESLRKDEDLRLPADLDYAEIGSLSNEVRGKLARVRPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKKN 616
           TP AL  LL ++++ 
Sbjct: 601 TPGALTALLAHVRRG 615


>gi|85714096|ref|ZP_01045085.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
 gi|85699222|gb|EAQ37090.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
          Length = 623

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/615 (55%), Positives = 433/615 (70%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAAA +A++GA TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   TFDVIVIGGGHAGCEAAAASARIGARTALVTHRFATVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR+ADAAGIQFR+LN +KGPAVRGPR Q DR+LY  AMQ  I    NL+VI GE 
Sbjct: 64  LDGLMGRMADAAGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQVAIRETANLEVIVGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  I + D    R + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DDLIISDGRIGGIRLIDGRQFRSAAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALGLSR 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS MT +IT  QIECGITR
Sbjct: 184 SFERIGFTLGRLKTGTPPRLDGATIGWAAVEMQPGDDPPEPFSVMTGRITTPQIECGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N++ S IYSG I S GPRYCPSIEDK+VRFG+R+GHQIFLEPEGL+   
Sbjct: 244 TTPATHEVIRVNVRRSPIYSGQITSSGPRYCPSIEDKVVRFGDRDGHQIFLEPEGLDDPT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q   + TIPGLEKV + RPGYAIEYD+++P+EL PTL+T+++ GLF
Sbjct: 304 VYPNGISTSLPEDVQLAILATIPGLEKVRMTRPGYAIEYDHVDPRELDPTLQTRRMPGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D I F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAALGAGGGDPIVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       I      ++L  SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDKGIALGCVGAGRAAHHRAKIAALRAAKALAMSLSVT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +S  +DG  R+A+E LSYPD   + + +I P+       +   L+I++ Y  
Sbjct: 484 PNEAACHGLSLNRDGHRRSAFELLSYPDIGWREVAAIWPELSAVDPKIAVHLEIDAKYDV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L+    DYS +P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLKRQTADVEAFRRDEG-LVLTGIDYSVVPGLSNEARGRLEKAQPRTIGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++ T K
Sbjct: 603 ALGILAAYLRRETRK 617


>gi|296445002|ref|ZP_06886963.1| glucose inhibited division protein A [Methylosinus trichosporium
           OB3b]
 gi|296257423|gb|EFH04489.1| glucose inhibited division protein A [Methylosinus trichosporium
           OB3b]
          Length = 615

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/603 (56%), Positives = 425/603 (70%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   SYDVIVIGGGHAGCEAAA +A+LGA T L+TH   TIG+MSCNPAIGGLGKG LVR
Sbjct: 1   MTRSSYDVIVIGGGHAGCEAAAASARLGARTVLVTHSRDTIGAMSCNPAIGGLGKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADAAGIQFR+LN  KGPAVRGPR QADR+LYR AMQ  I +   LDV+
Sbjct: 61  EIDALDGLMGRVADAAGIQFRLLNRSKGPAVRGPRAQADRKLYRAAMQAAIAAIPGLDVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V         +  + +    ++R   VVLTTGTFL GVIHIG+ +IPAGRMG+ P+ 
Sbjct: 121 EGAVERLVVADGRVCGVEI-GCMVVRAGAVVLTTGTFLNGVIHIGEKRIPAGRMGEQPAI 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     +  F T RLKTGTP RLDG+TI W+K E+Q  DE   PFSF+T +I N QI+C
Sbjct: 180 GLAEDLRRIGFATRRLKTGTPPRLDGRTIAWEKLERQSGDETPEPFSFLTTRIGNPQIDC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRTN   H++I++N+  S + SG I   GPRYCPSIEDK+ RFG+R  HQIFLEPEGL
Sbjct: 240 HITRTNAAAHKVILDNLDRSPLRSGAISGPGPRYCPSIEDKVTRFGDREAHQIFLEPEGL 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNG+ST+LPEE+QH FIR+I GLE+ +I+RPGYAIEYD+++P+EL   LETKKI
Sbjct: 300 DDDTVYPNGVSTSLPEEVQHHFIRSIEGLEQAHILRPGYAIEYDFVDPRELGANLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQGLVAG+N+A +++    I F R ++YIGVMIDDL ++GV
Sbjct: 360 EGLFFAGQLNGTTGYEEAAAQGLVAGLNAAVRASGGAPILFDRAEAYIGVMIDDLVTRGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ +GC+G  R   F +     +  R+LL  
Sbjct: 420 SEPYRMFTSRAEYRLSLRADNADERLTPRGLAIGCVGAERAAAFGERRTRLDNARALLDG 479

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L LT+   +   +   QDG+ R+A+  LSYP   +  L  I P           R++ ++
Sbjct: 480 LTLTTAAAARHGLPINQDGQRRSAFALLSYPGIDLVRLRDIWPQLCSIDDETAARVETDA 539

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +    + +E+  +P+  DY  +  LS EL+ KL+ L+P  L QA +IEG
Sbjct: 540 RYAVYLERQTADIDAYRRDEQLTLPETIDYRQIGGLSAELRAKLAFLRPRTLGQAQRIEG 599

Query: 601 MTP 603
           +TP
Sbjct: 600 ITP 602


>gi|149912890|ref|ZP_01901424.1| glucose-inhibited division protein A [Roseobacter sp. AzwK-3b]
 gi|149813296|gb|EDM73122.1| glucose-inhibited division protein A [Roseobacter sp. AzwK-3b]
          Length = 623

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/611 (55%), Positives = 438/611 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAGC+AA  AA++GA TAL+T   S IG MSCNPAIGGLGKGHLVREID
Sbjct: 5   KHFDVIVIGGGHAGCDAACAAARVGARTALVTLNKSGIGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           +LDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR+LYR AM  EI +Q  L +I+GE
Sbjct: 65  SLDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYREAMLSEIENQPGLSIIEGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A        ++ IV+ D S I    VVLTTGTFLRGVIHIG +  P GRMGD PS  L 
Sbjct: 125 AADVLMNGERVTGIVLADGSEISAGAVVLTTGTFLRGVIHIGDVSRPGGRMGDKPSIKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RLDGKTI WD  EKQ  D+  + FSF++D  T RQI CGIT
Sbjct: 185 ERLDSFALKLGRLKTGTPPRLDGKTIDWDSLEKQPGDDDPVLFSFLSDAPTARQISCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPE L+ D
Sbjct: 245 HTNEQTHAIIRDNLDRSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQIFLEPESLSDD 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++YPNGIST+LPE++Q  ++R+I GLE   I++PGYAIEYDY++P+ L  TL  K + GL
Sbjct: 305 LIYPNGISTSLPEDVQQDYVRSIAGLEHAVIVQPGYAIEYDYVDPRALDATLAVKAVPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A  + + D + FSR+DSYIGVM+DDL ++GV EP
Sbjct: 365 YLAGQINGTTGYEEAAAQGLVAGLNAALAAQERDPLLFSRSDSYIGVMVDDLITRGVSEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+G+  G +G +R + FA+ ++  +  R+ L +   
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTPLGIATGLVGPQRSQAFAQKMERLDAARARLDAASF 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T ++L  T +   QDG  RTA++ L++PD    +L ++             +L+ ++ YA
Sbjct: 485 TPRDLIKTGLKINQDGSRRTAFQLLAFPDIDFSHLLTLDQTLADIDEASRAQLEKDALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  + + +K +E + IP D D+S++  LSNELK KL+  +P NL QAS+I+GMTP
Sbjct: 545 NYIQRQNRDVEMMKRDEAQEIPSDLDFSTIDGLSNELKTKLTAARPANLAQASRIDGMTP 604

Query: 604 AALNLLLIYIK 614
           AAL LL+  ++
Sbjct: 605 AALTLLMSRLR 615


>gi|260431965|ref|ZP_05785936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415793|gb|EEX09052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 625

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/611 (54%), Positives = 436/611 (71%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAG EAA  AA++GA+TAL+T     IG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGAGHAGTEAAHAAARMGANTALVTLSERDIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR LYR AMQ EIL+ ENL V+ GEV 
Sbjct: 69  DGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRALYRAAMQAEILNCENLTVVPGEVV 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +   ++ +V+ D S I    V+LT+GTFLRGVIHIG ++ P GRMGD PS  L   
Sbjct: 129 DFRMDGPRVAGVVLADGSEIPSKAVILTSGTFLRGVIHIGDVQRPGGRMGDRPSVRLAER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              +D  TGRLKTGTP RLDG+TI W   E Q  D     FSF+++++   QI CGIT T
Sbjct: 189 LDSYDLPTGRLKTGTPPRLDGRTIDWTGLELQDGDSDPTLFSFLSNRVVAPQISCGITHT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF E+  HQIFLEPEG N   +
Sbjct: 249 NSRTHEIIEKNLSRSAMYGGHIEGIGPRYCPSIEDKIVRFAEKASHQIFLEPEGANDHTI 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP+++Q +++RTI GLE   I++PGYAIEYDYI+P+ L  +L    + GL+L
Sbjct: 309 YPNGISTSLPQDVQVEYVRTIKGLENAEILQPGYAIEYDYIDPRVLTASLALPDVPGLYL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+N+A      D + F+R++SYIGVMIDDLT++GV EPYR
Sbjct: 369 AGQINGTTGYEEAAAQGLVAGLNAALAVQGRDPLHFTRSNSYIGVMIDDLTTRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP G+++GC+GE+R+  F + +++   ++  L +   T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPCGLEIGCVGEKRRIAFQEKMEKLGSVKQKLVAQTYTP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           K + +  I   QDG  R     L++P+ + ++L  +          +  +++ ++ YA Y
Sbjct: 489 KQIQAAGIEVNQDGNRRDGMSILAFPNVTFEDLLPLVEGLDAVEPDIRRQVERDALYANY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + + +K +E   IP DFDYSSL  LS+E+KE+L+  +P N+ QAS+IEG+TPAA
Sbjct: 549 IARQQRDVEAMKRDESYEIPPDFDYSSLDGLSSEMKERLTQARPANIAQASRIEGITPAA 608

Query: 606 LNLLLIYIKKN 616
           L L+L  ++++
Sbjct: 609 LTLVLAKLRRD 619


>gi|161170270|gb|ABX59240.1| division protein A [uncultured marine bacterium EB000_55B11]
 gi|297183799|gb|ADI19922.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 627

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/617 (57%), Positives = 436/617 (70%), Gaps = 1/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG +AA  A + GA TALITHK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 8   KQYDVIVIGGGHAGADAAHAAWRSGAKTALITHKFKTIGEMSCNPAIGGLGKGHLVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRVAD +GIQFR+LN KKGPAV+GPRTQADR LYR AMQ+E +    LD+I+ E
Sbjct: 68  ALDGLMGRVADKSGIQFRLLNRKKGPAVQGPRTQADRALYRTAMQKEFIGAAGLDIIESE 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+      N +  +++ D S I   TVVLTTGTFLRG+IHIG +  P GRMGD P+  L 
Sbjct: 128 VSDLIMRNNKVRGVILSDKSQINAPTVVLTTGTFLRGIIHIGDVSRPGGRMGDKPAIPLA 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGI 242
                F    GRLKTGTP RLD ++I W+  E Q AD+    FSF++ K    RQI+CGI
Sbjct: 188 ERLDSFGLPLGRLKTGTPPRLDARSINWNVLETQSADDDPALFSFLSKKSDIPRQIKCGI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  SA+YSG I   GPRYCPSIEDKIVRF E++ HQ+FLEPEGLN 
Sbjct: 248 THTNTNTHSIIQENLSKSAMYSGKIDGVGPRYCPSIEDKIVRFSEKDSHQVFLEPEGLND 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LPE++Q++++ ++ GLE   II+PGYAIEYDY++P+ L  TLE K I G
Sbjct: 308 HTIYPNGISTSLPEDVQNEYVHSMLGLENAKIIQPGYAIEYDYVDPRALKHTLELKDIGG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+AR +   D I F R  +YIGVMIDDL ++GV E
Sbjct: 368 LYLAGQINGTTGYEEAAAQGLVAGLNAARAALGKDSIIFDRAQAYIGVMIDDLVTRGVSE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G + G + E+RQ  F K +   +  + LL S +
Sbjct: 428 PYRMFTSRAEYRLSLRADNADQRLTNLGFECGLVSEKRQYIFEKKMDAIDKAKILLNSYL 487

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +T        IS KQDG  R+A E LS+ D S   L  + PD  K +  V ++L+ ++ Y
Sbjct: 488 ITPTQAKKAGISIKQDGIRRSAMELLSFKDVSFDKLGCMWPDLSKINQEVRDQLEKDAIY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ      ++ +EK +IP++F+YS +  LSNELK+KL   +P +L QA +IEGMT
Sbjct: 548 INYIDRQSAAVNAMRKDEKLIIPENFNYSDISGLSNELKQKLMHSRPTSLAQAGRIEGMT 607

Query: 603 PAALNLLLIYIKKNTVK 619
           PA L L+L  I+K  VK
Sbjct: 608 PAGLALILTSIRKFDVK 624


>gi|90421002|ref|ZP_01228906.1| glucose-inhibited division protein A [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334780|gb|EAS48556.1| glucose-inhibited division protein A [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 622

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/618 (54%), Positives = 448/618 (72%), Gaps = 1/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DV+VIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MEHSFDVVVIGGGHAGCEAASAAARAGARTALVTHRFDTIGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+VADAAGIQFR+LN +KGPAVRGPRTQADR LYR AMQ  I +Q  L+V++
Sbjct: 61  IDALGGLMGQVADAAGIQFRLLNRRKGPAVRGPRTQADRRLYREAMQAAIRAQSGLEVVE 120

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G+VA     + N ++ IV+ D   + C  VVLTTGTFL G+IHIG  KIPAGRMG+ PS 
Sbjct: 121 GDVADLTLDDANRVTGIVLGDGGTMACRAVVLTTGTFLSGLIHIGDQKIPAGRMGEDPST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDG+TI W   ++Q  D+  +PFS++T  I NRQI+C
Sbjct: 181 GLSGTLSRLGLTLGRLKTGTPARLDGRTIDWAGLDRQAPDDVPVPFSYLTTTIANRQIDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRT  ETH II +N+  SA+YSG I   GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL
Sbjct: 241 GITRTTPETHAIIRDNLGRSALYSGQIAGNGPRYCPSIEDKIVKFGDRDGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D++YPNG+ST+LPE++Q  F+R+IPGLE+V + +PGYAIEYD+++P+EL   L  ++ 
Sbjct: 301 DDDIIYPNGLSTSLPEDVQTLFLRSIPGLERVELRKPGYAIEYDHVDPRELDRRLAVRRA 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL+AG+N+A  +     +   R D+YIGVMIDDLT  GV
Sbjct: 361 EGLFLAGQINGTTGYEEAAAQGLIAGLNAALLAAGSKAVTIGRADAYIGVMIDDLTRTGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G+ L  I   R+  F          R+ L++
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADRRLTPLGLSLAIIDAERRTVFEASEAALEAARTQLEA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             LT        +    DG+ R+A++ LS  D  +  L  + P+  + +  + ER++IE+
Sbjct: 481 STLTPSEAQRHGLPVNLDGRRRSAWQLLSQTDVDLDRLAIVWPELAEVAGPIRERIEIEA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +Y  Y  RQ  + + ++ +EKR +P D +Y ++  LSNEL++KL+  +P ++ +A  I+G
Sbjct: 541 AYDVYLDRQRKDQERLRRDEKRALPADLNYMAMVGLSNELRQKLTDRRPASIAEAEAIDG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAAL ++L+ +++  +
Sbjct: 601 MTPAALAIILVALRRAEI 618


>gi|163732964|ref|ZP_02140408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter litoralis Och 149]
 gi|161393499|gb|EDQ17824.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter litoralis Och 149]
          Length = 623

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/616 (54%), Positives = 430/616 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAG EAA  AA++GA T LIT   S IG MSCNPAIGGLGKGHLVREID
Sbjct: 5   KHFDVLVIGGGHAGTEAAHAAARMGAVTGLITMSKSGIGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y   M      Q+N+D++ GE
Sbjct: 65  ALDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRAIYHHKMLEATEQQQNIDIVIGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              F  + + ++ +V+ D S I   TV+LTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 125 AVDFVMDGDRVAGVVLDDGSHILSRTVILTTGTFLRGVIHIGDVSRSGGRMGDKASVRLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +    F    GRLKTGTP RL  K+I WD  E+Q  DE    FSFM+  +T RQ+ CGIT
Sbjct: 185 DRIDSFALPMGRLKTGTPPRLSSKSIRWDILEEQPGDEEPTLFSFMSKGVTARQVSCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II ENI  SA+Y G I   GPRYCPSIEDKI+RF +++ HQIFLEPEGL+TD
Sbjct: 245 HTNEKTHDIIRENIALSAMYGGHIDGVGPRYCPSIEDKILRFADKDSHQIFLEPEGLSTD 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LPEE+Q  ++ +IPGLE   I++PGYAIEYDY++P+ L  +L  + + GL
Sbjct: 305 AVYPNGISTSLPEEVQTAYVHSIPGLENAVILQPGYAIEYDYVDPRALDSSLSVQLVPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N++ ++   D + FSR+DSYIGVMIDDLT++GV EP
Sbjct: 365 YLAGQINGTTGYEEAAAQGLVAGLNASLEARDHDPVVFSRSDSYIGVMIDDLTTRGVTEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+G+ LGC+ + R++ F +        R +L     
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTPLGLDLGCVSDERKRAFEEKSTALEGARRILSGSSY 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T K  +   IS  +DG  RTA + L++PD + +++  + P        V  +++ E+ YA
Sbjct: 485 TPKQAAEVGISISKDGSRRTAMQLLAFPDTTFKDIALLDPSLHSIDPEVQRQMEREALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   +K +E   IP DFDY  L  LSNEL  KL+  +P +L Q S+I+GMTP
Sbjct: 545 NYIDRQQKDVDLLKKDEAHKIPTDFDYDQLGGLSNELTAKLNQTRPTSLAQVSRIDGMTP 604

Query: 604 AALNLLLIYIKKNTVK 619
           AAL L+L  +++N  K
Sbjct: 605 AALTLILAKLRQNARK 620


>gi|254420248|ref|ZP_05033972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas sp. BAL3]
 gi|196186425|gb|EDX81401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas sp. BAL3]
          Length = 630

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/611 (54%), Positives = 428/611 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIGGGHAGCEAAA +++ GA T L+T K  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   SYDVVVIGGGHAGCEAAAASSRAGARTLLLTQKLETIGEMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G  
Sbjct: 68  LDGIMGRLADVSGIQFRLLNRSKGAAVRGPRSQIDRRLYREAMQAELARTPNLSLMAGTA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   + + +  +       +R   VVLTTGTFL GVIH G  +IPAGR G+ PS  L  
Sbjct: 128 EGLILDGDRVVGVTTGTGERVRAGAVVLTTGTFLNGVIHRGDERIPAGRHGEDPSTGLAA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                D   GRLKTGTPARLDG+TI WD+ E Q ADE    FSFMTD+I   QI CG+T 
Sbjct: 188 DLHAADLMMGRLKTGTPARLDGRTIAWDRLEMQQADETPSAFSFMTDRIDVPQIACGVTH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   
Sbjct: 248 TTEETHRIIAENLGESAVYGGKLSGRGPRYCPSIEDKVVRFADKTSHQIFLEPEGLDDPT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST++ E  Q  F+RTIPGLE V + R GYAIEYDY++P+EL P LE KK  GL+
Sbjct: 308 VYPNGISTSVSEPTQLAFLRTIPGLEAVEVFRYGYAIEYDYVDPRELSPALEVKKRPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AG+N+AR + +   +   R  +YIGVMIDDL ++GV EPY
Sbjct: 368 LAGQINGTTGYEEAAAQGLMAGLNAARTAGEDAPVILGRDQAYIGVMIDDLVTRGVTEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLTP+ + LG +G  R+K F    Q+ +    + +  + T
Sbjct: 428 RMFTSRAEYRLTLRADNADQRLTPLAIALGIVGPERRKCFELKAQKLSEAGIVSRETLFT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K  ++  I    DG+ R+  E L++PD ++ +     P    + + V E+++I++ YA 
Sbjct: 488 PKEANAIGIPVNADGRRRSMRELLAFPDVTLDHFVQTHPVVASWDAEVREQVEIDAGYAN 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ+I+A+ ++ EE  L+P D DY+++ +LSNE+KEKL+ ++P  L QA +IEGMTP 
Sbjct: 548 YLDRQLIDAEALRTEEGLLLPTDLDYAAIGSLSNEVKEKLARVQPRTLGQAGRIEGMTPG 607

Query: 605 ALNLLLIYIKK 615
           AL  LL ++K+
Sbjct: 608 ALTALLAHVKR 618


>gi|328541701|ref|YP_004301810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [polymorphum gilvum SL003B-26A1]
 gi|326411453|gb|ADZ68516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Polymorphum gilvum SL003B-26A1]
          Length = 623

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/586 (56%), Positives = 420/586 (71%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITH+  TIG MSCNPAIGGLGKGHLVREIDALDGLMGRVAD AGIQFR+LN +KGPA
Sbjct: 32  TVLITHRFDTIGVMSCNPAIGGLGKGHLVREIDALDGLMGRVADRAGIQFRLLNRRKGPA 91

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           VRGPR QADR LYR AMQ EI    NL V+ GE          ++ + + D   I C  V
Sbjct: 92  VRGPRAQADRRLYREAMQAEIAETANLTVVGGEAERLEIHDGRVAGVTLTDGRRIACGAV 151

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           VLTTGTFLRG+IHIG  KIPAGR+G+ P+  L  S  +  F  GRLKTGTPARLDG++I 
Sbjct: 152 VLTTGTFLRGLIHIGDRKIPAGRVGEGPAMGLSVSLEEIGFALGRLKTGTPARLDGRSID 211

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           W + E+Q  D+  +PFS +T  IT  Q+ C ITRT   THRII EN+  SA+YSG+IK  
Sbjct: 212 WARLEEQPGDDDPVPFSTLTVAITTPQVPCHITRTTEATHRIIRENLSRSAMYSGEIKGR 271

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   VYPNGIST+LPE+ QH F+RTIPGLE
Sbjct: 272 GPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDHTVYPNGISTSLPEDAQHAFLRTIPGLE 331

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           KV +++PGYAIEYD+++P+EL  TLE ++  GLFLAGQINGTTGYEEA AQGL+AG+N+A
Sbjct: 332 KVTVLQPGYAIEYDHVDPRELKATLEARRCRGLFLAGQINGTTGYEEAGAQGLLAGLNAA 391

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
             +    C    R   YIGVMIDDL ++G+ EPYRMFTSRAEYR+SLR DNAD RLTP+G
Sbjct: 392 LAAGGGGCFTVDRAQGYIGVMIDDLVTRGITEPYRMFTSRAEYRLSLRADNADQRLTPLG 451

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
           + LGC+   R+  F   +++    R LL++L +T        +   QDG  R+A++ LSY
Sbjct: 452 IALGCVSATRRIAFETKLEKLEETRRLLEALTVTPAQARRQGLPVNQDGIRRSAFDLLSY 511

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           PD S + L  + PD     + + E++  ++ Y+ Y  RQ  +   ++ +E   IP+DFD+
Sbjct: 512 PDMSFERLKDVWPDLAGIEASIAEQVATDALYSVYLDRQAADIAALRRDEALAIPEDFDF 571

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++L  LSNE+++KL  ++P  L QAS+++GMTPAAL LLL ++K+ 
Sbjct: 572 AALAGLSNEIRQKLETVRPATLGQASRMDGMTPAALTLLLSHVKRQ 617


>gi|114797761|ref|YP_762234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hyphomonas neptunium ATCC 15444]
 gi|122941979|sp|Q0BWA9|MNMG_HYPNA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114737935|gb|ABI76060.1| glucose-inhibited division protein A [Hyphomonas neptunium ATCC
           15444]
          Length = 621

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/610 (54%), Positives = 432/610 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAAA +A+ GA TALITHK STIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 7   FDVIVIGGGHAGCEAAAASARFGARTALITHKRSTIGEMSCNPAIGGLGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR+AD AGIQFR+LN  KGPAV GPR+Q DR+LYR AMQ E+    NL +I+    
Sbjct: 67  DGVMGRLADKAGIQFRMLNRSKGPAVWGPRSQIDRKLYREAMQSELADYPNLTIIEDGAE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +I  +V         S VV+TTGTFL+G IHIG  +IPAGR+G++P+  L + 
Sbjct: 127 DLIVEDGLIRGVVGLTGQRYGASKVVITTGTFLKGEIHIGAKRIPAGRIGEAPALGLSDR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGTPARLDG+TI WD+ E Q ADE+ IPFSF+  +IT RQ++CGIT T
Sbjct: 187 LYSIGLPMGRLKTGTPARLDGRTIHWDRLEMQPADEQPIPFSFLNSEITVRQVQCGITWT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  ++  SA+YSG I   GPRYCPSIEDK+ RFG+R+ HQ+FLEPEGL+   V
Sbjct: 247 TPETHAIIEAHMNESAVYSGAISGRGPRYCPSIEDKVNRFGDRDRHQVFLEPEGLDDHTV 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPEE+Q +FIRTIPGLE   I++  YAIEYDY++P+ L P LE K + GL+L
Sbjct: 307 YPNGISTSLPEEVQEKFIRTIPGLEDAVILQHAYAIEYDYVDPRALSPALEVKLMPGLYL 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR ++  D + F R ++YIGV+IDDL ++GV EPYR
Sbjct: 367 AGQINGTTGYEEAGAQGLMAGLNAARAASGKDPVIFDRAEAYIGVLIDDLVTRGVTEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR++LR DNAD RLT  G+  G + E R   F    +     R+LLK+L L+ 
Sbjct: 427 MFTSRAEYRLALRADNADQRLTQRGIDAGVVCETRAAMFHVKHRALESARNLLKTLNLSP 486

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                   +  QDG+ R+A+E+LSY +    +L  + P+     + ++ +++IE+ Y+AY
Sbjct: 487 AAAVRNGWAVNQDGRIRSAWEYLSYKEICFDHLAQVWPELSAIPAEIVAQIEIEALYSAY 546

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E   IP D DY  +  LSNE+++KL  ++P  L QA +IEG+TP A
Sbjct: 547 LDRQAEDVAALRRDEALSIPSDLDYDLIGGLSNEVRQKLKSVRPGTLGQAGRIEGVTPGA 606

Query: 606 LNLLLIYIKK 615
           L  LL ++++
Sbjct: 607 LTALLGHVRR 616


>gi|254475320|ref|ZP_05088706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. R11]
 gi|214029563|gb|EEB70398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. R11]
          Length = 624

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/603 (53%), Positives = 433/603 (71%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIV+GGGHAG EAA  +A++GA TAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHPNYDVIVVGGGHAGTEAAHASARMGARTALVTLTKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  E  +QENLD++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAETEAQENLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GEV  F   ++ I  + + D+S I    V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 AGEVVDFLITESTIHGVRLADDSEISAKAVILTSGTFLRGVIHIGDVSKPGGRMGDKPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F+   GRLKTGTP RLDG+TI WD+ + Q  D+    FSFMT+++   Q++C
Sbjct: 181 RLAERLDSFELPLGRLKTGTPPRLDGRTIAWDQLDAQPGDDEPTFFSFMTNQLYAPQVDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N++ SA+Y G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG 
Sbjct: 241 GITHTNEKTHEIIRQNLQRSAMYGGHIEGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LP EIQ  ++ +I GLEK  I++PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DDHTVYPNGISTSLPVEIQEAYVHSIFGLEKAEILQPGYAIEYDYVDPRALGLDLALKSH 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQINGTTGYEEAAAQGLVAG+N+AR + + + + FSR++SYIGVMIDDLT+ GV
Sbjct: 361 TGLYLAGQINGTTGYEEAAAQGLVAGLNAARFAKREEALTFSRSESYIGVMIDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT +G+++GC+GE+R+  F++ +++ +  R+++ +
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTGLGIEIGCVGEQRKVEFSEKMEKLDAARAVMDA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K +++  I+  QDG  RTA + L++PD    ++  + P+       +  +L+ ++
Sbjct: 481 RTFTPKEVNAAGIAVNQDGNKRTATDVLAFPDVGFDDILPLLPELMTCEDPIRRQLERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E + +K +E   IP+DF Y     LSNELK KL   +P  L QA +++G
Sbjct: 541 LYANYITRQKREIEALKRDEGHHIPRDFSY-DFEGLSNELKGKLERARPETLAQAGRVDG 599

Query: 601 MTP 603
           MTP
Sbjct: 600 MTP 602


>gi|86136757|ref|ZP_01055335.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
 gi|85826081|gb|EAQ46278.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
          Length = 627

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/615 (54%), Positives = 429/615 (69%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DV+VIGGGHAG EAA  AA++G  TALIT     IG MSCNPAIGGLGKGHLVREI
Sbjct: 6   HSDFDVVVIGGGHAGTEAAHAAARMGVRTALITLTREGIGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+MG+VAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M +    QENL++I+G
Sbjct: 66  DAMDGVMGKVADLAGIQFRLLNRRKGPAVQGPRAQSDRGIYRREMLKRTDVQENLEIIEG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E   F  +   +  +V+ D S IR   V+LTTGTFLRGVIHIG +  P GRMGD PS  L
Sbjct: 126 EATDFLMQGTAVQGVVLADGSEIRSRFVILTTGTFLRGVIHIGDVSKPGGRMGDRPSVKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 F    GRLKTGTP RLDG+TI WD  E Q  DE    FSFMT +++ +Q+ CGI
Sbjct: 186 AERLDSFKLPMGRLKTGTPPRLDGRTINWDILEGQPGDEDPTFFSFMTKELSAKQVVCGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPEG   
Sbjct: 246 THTNEKTHEIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQIFLEPEGATD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q  ++R+I GLEK  I++PGYAIEYDYI+P+ L   L  K + G
Sbjct: 306 HTVYPNGISTSLPVDVQADYVRSIVGLEKAEILQPGYAIEYDYIDPRALSLDLSLKDVPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+++A K  + + + F R++SYIGVMIDDLT+ GV E
Sbjct: 366 LYLAGQINGTTGYEEAAAQGLVAGLSAAAKCREQEPVMFGRSNSYIGVMIDDLTTHGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLTP+ ++ GCI E R+  F   ++    +R+ ++  V
Sbjct: 426 PYRMFTSRAEFRLSLRADNADQRLTPLAIEAGCISEERKTAFTAKMEHLADIRAKMEDGV 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K +S   I   QDG  RT +E L++PD   ++L  + P+    SS +  +L+ ++ Y
Sbjct: 486 FTPKQISEAGIYVNQDGNKRTGFEVLAFPDVCFEDLVPLLPECAHASSDIRRQLERDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  E   +K +E  +IP +FDY S+  LS EL++KLS  +P  L +AS+I GMT
Sbjct: 546 VHYIARQEKEIAAVKRDEGYVIPPEFDYGSIDGLSAELQQKLSTTRPETLAKASRINGMT 605

Query: 603 PAALNLLLIYIKKNT 617
           PA L L+L  ++KN+
Sbjct: 606 PAGLALVLARLRKNS 620


>gi|114769774|ref|ZP_01447384.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
 gi|114549479|gb|EAU52361.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
          Length = 621

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/617 (56%), Positives = 436/617 (70%), Gaps = 1/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG +AA  A + GA TALITHK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQYDVIVIGGGHAGADAAHAAWRSGAKTALITHKFKTIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRVAD +GIQFR+LN KKGPAV+GPRTQADR LYR AMQ+E +    LD+I+ E
Sbjct: 62  ALDGLMGRVADKSGIQFRLLNRKKGPAVQGPRTQADRALYRAAMQKEFIGVAGLDIIESE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+      N +  +++ + S I   TVVLTTGTFLRG+IHIG +  P GRMGD P+  L 
Sbjct: 122 VSDLIMCNNKVRGVILSNKSQINAPTVVLTTGTFLRGIIHIGDVSRPGGRMGDKPAIPLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGI 242
                F    GRLKTGTP RLD ++I W+  E Q AD+    FSF++ K    RQI+CGI
Sbjct: 182 ERLDSFGLPLGRLKTGTPPRLDARSINWNVLETQSADDDPALFSFLSKKSDIPRQIKCGI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  SA+YSG I   GPRYCPSIEDKIVRF E++ HQ+FLEPEGLN 
Sbjct: 242 THTNTNTHSIIQENLSKSAMYSGKIDGVGPRYCPSIEDKIVRFSEKDSHQVFLEPEGLND 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LPE++Q++++ ++ GLE   II+PGYAIEYDY++P+ L  TLE K I G
Sbjct: 302 HTIYPNGISTSLPEDVQNEYVHSMLGLENAKIIQPGYAIEYDYVDPRALKHTLELKDIGG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+AR +   D I F R  +YIGVMIDDL ++GV E
Sbjct: 362 LYLAGQINGTTGYEEAAAQGLVAGLNAARAALGKDSIIFDRAQAYIGVMIDDLVTRGVSE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G + G + E+RQ  F K +   +  + LL S +
Sbjct: 422 PYRMFTSRAEYRLSLRADNADQRLTNLGFECGLVSEKRQYIFEKKMDAIDKAKILLNSYL 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +T        IS KQDG  R+A E LS+ D S   L  + PD  K +  V ++L+ ++ Y
Sbjct: 482 ITPTQAKKAGISIKQDGIRRSAMELLSFKDVSFDKLGCMWPDLSKINQEVRDQLEKDAIY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ      ++ +EK +IP++F+YS +  LSNELK+KL   +P +L QA +IEGMT
Sbjct: 542 INYIDRQSAAVNAMRKDEKLIIPENFNYSDISGLSNELKQKLMHSRPTSLAQAGRIEGMT 601

Query: 603 PAALNLLLIYIKKNTVK 619
           PA L L+L  I+K  VK
Sbjct: 602 PAGLALILTSIRKFDVK 618


>gi|220921038|ref|YP_002496339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium nodulans ORS 2060]
 gi|219945644|gb|ACL56036.1| glucose inhibited division protein A [Methylobacterium nodulans ORS
           2060]
          Length = 627

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/598 (56%), Positives = 433/598 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAAA AA+ GA TAL+TH+  TIG+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 9   FDVIVVGGGHAGAEAAAAAARTGARTALVTHRRDTIGAMSCNPAIGGLGKGHLVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY  A+Q  + S   L +++GE  
Sbjct: 69  DGLMGRAADRAGIQFRLLNRRKGPAVRGPRTQADRKLYARAIQAALGSVPGLTLVEGEAH 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                +  ++ IVM D   + C+ VVLTTGTFLRG+IHIG+   PAGR+G++PS  L  +
Sbjct: 129 DLTVTEGRVTGIVMADGRALPCAAVVLTTGTFLRGLIHIGERTTPAGRVGEAPSLGLAAT 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTPARLDG++I W   E+Q AD+  +PFS MT++IT  QIECG+TRT
Sbjct: 189 LERHGFGLGRLKTGTPARLDGRSIDWAGVERQAADDEPVPFSTMTERITTPQIECGVTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   V
Sbjct: 249 TQSVHDLIRANLHRSPMYSGGITSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDLTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGISTALPEE+Q + +R IPG E+  ++RPGYAIEYDY++P+EL PTL+T++I+GLFL
Sbjct: 309 YPNGISTALPEEVQREILRLIPGCERARMLRPGYAIEYDYVDPRELDPTLQTRRIAGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SYIGVMIDDL + GV EPYR
Sbjct: 369 AGQINGTTGYEEAAGQGLVAGLNAARLAGGADLAVFDRAESYIGVMIDDLVTHGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLTP G+ LGC+   R + FA      +  R+ L +L LT 
Sbjct: 429 MFTSRSEYRLSLRIDNADERLTPRGLALGCVSSERARHFAAGRTALSAARARLDALSLTP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   +S  +DG  R+A++ LSYP+ S + L  I P+     + + ERL+ +++YA Y
Sbjct: 489 TEAAQHGLSLNRDGIRRSAFQLLSYPEISWECLAGIWPELGAIPAALAERLRTDATYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +    + +E   +P   DYS +  LSNEL+ KL  ++P  L QA++IEG+TP
Sbjct: 549 LDRQQADIAAFRRDEAVRLPASLDYSRIAGLSNELRAKLEGVRPHTLGQAARIEGVTP 606


>gi|110677826|ref|YP_680833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter denitrificans OCh 114]
 gi|123172982|sp|Q16CZ6|MNMG_ROSDO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109453942|gb|ABG30147.1| glucose inhibited division protein A [Roseobacter denitrificans OCh
           114]
          Length = 623

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/616 (54%), Positives = 431/616 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAG EAA  AA++G+ T LIT   S IG MSCNPAIGGLGKGHLVREID
Sbjct: 5   KHFDVLVIGGGHAGTEAAHAAARMGSQTGLITMSRSGIGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y   M      Q+NLD+I GE
Sbjct: 65  ALDGVMGRVADQAGIQFRLLNRRKGPAVQGPRAQSDRAIYHNRMLEATDQQQNLDIIVGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              F  +   +  +V+QD++ I   TV+LTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 125 AVDFVMDGERVIGVVLQDDAEILAKTVILTTGTFLRGVIHIGDVSRSGGRMGDKASVRLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +    F    GRLKTGTP RL  K+I WD  E+Q  D+    FSF++  ++ RQ+ CGIT
Sbjct: 185 DRIDSFGLPMGRLKTGTPPRLSSKSINWDVLEEQPGDDEPTLFSFLSKGVSARQVSCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN+ TH II +NI  SA+Y G I   GPRYCPSIEDKI+RF ++  HQIFLEPEGLNTD
Sbjct: 245 HTNVRTHDIIRDNITRSAMYGGHIDGVGPRYCPSIEDKIIRFADKESHQIFLEPEGLNTD 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP+++Q +++ +I GLEK  I++PGYAIEYDY++P+ L  +L    + GL
Sbjct: 305 AVYPNGISTSLPQDVQSEYVHSIVGLEKAIILQPGYAIEYDYVDPRALDSSLSVLSVPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N++ ++   D I FSR+DSYIGVMIDDLT++GV+EP
Sbjct: 365 YLAGQINGTTGYEEAAAQGLVAGLNASLEARGSDPITFSRSDSYIGVMIDDLTTRGVMEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F   I+  +  R LL     
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTPIGLALGCVSDERKQAFEVKIEALDRARRLLTESSY 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T K      IS   DG  RTA + L++P+ S ++L  + P          ++++ E+ YA
Sbjct: 485 TPKQAGEAGISVSHDGSRRTAMQLLAFPNTSFKDLSLLDPVFDGIDVETQQQMEREALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   +K +E   IP DFDY  L  LSNELK KL+  +P +L Q  +I+GMTP
Sbjct: 545 TYIERQQKDVDLLKKDEGHKIPADFDYDQLSGLSNELKSKLNSTRPTSLAQVGRIDGMTP 604

Query: 604 AALNLLLIYIKKNTVK 619
           AAL L+L  +++++ K
Sbjct: 605 AALTLILAKLRQSSKK 620


>gi|92115737|ref|YP_575466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrobacter hamburgensis X14]
 gi|122418936|sp|Q1QRZ1|MNMG_NITHX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91798631|gb|ABE61006.1| glucose inhibited division protein A [Nitrobacter hamburgensis X14]
          Length = 624

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/615 (54%), Positives = 433/615 (70%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAA  AA++GA TAL+TH+ ST+G+MSCNPAIGGLGKGHLVREIDA
Sbjct: 4   SFDVIVIGGGHAGCEAATAAARMGARTALVTHRLSTVGAMSCNPAIGGLGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPR Q DR+LY  AMQ EI    NL VI+GE 
Sbjct: 64  LDGLMGRVADAAGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQAEIREAANLVVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ I + D+   +   VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DDLIVADGRIAGIRLIDSRAFKTGAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALGLSV 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS MT +IT  QI CGITR
Sbjct: 184 SFERIGFTLGRLKTGTPPRLDGATIDWAAVEMQPGDDPPEPFSVMTSRITTPQIRCGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S IYSG I+S GPRYCPS+EDK+VRFG+R+GHQIFLEPEGL+   
Sbjct: 244 TMPATHEVIRANVHRSPIYSGQIRSSGPRYCPSLEDKVVRFGDRDGHQIFLEPEGLDDTT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGL KV +IRPGYAIEYD+++P+EL PTL+T+++ GLF
Sbjct: 304 VYPNGISTSLPEEVQLAILATIPGLTKVRMIRPGYAIEYDHVDPRELDPTLQTRRLPGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D + F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDPVVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ +GC+G  R       +   +  ++L  SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDKGIAMGCVGAGRAVHHRAKMAALSAAKALATSLSVT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +S  +DG  R+A+E L+YP+     + +I P+       V   L+I++ Y  
Sbjct: 484 PNEAARYGLSLNRDGHRRSAFELLAYPEIGWGEVAAIWPELSAIDPGVAVHLEIDAKYDV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L+  D DY ++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLKRQTADVEAFRRDES-LVLADVDYDAVPGLSNEARARLERARPRTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++   K
Sbjct: 603 ALGILAAYLRREARK 617


>gi|254436863|ref|ZP_05050357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 307]
 gi|198252309|gb|EDY76623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 307]
          Length = 625

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/618 (53%), Positives = 426/618 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVI+IGGGHAGCEAA  +A+ G  T LIT + S IG MSCNPAIGGLGKGHLVRE
Sbjct: 4   VKHAYDVIIIGGGHAGCEAAHASARSGVRTLLITLRLSDIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD AGIQFR+LN +KGPAV+GPRTQADR LYR A+Q    ++ NL+V +
Sbjct: 64  IDALDGVMGRAADRAGIQFRLLNRRKGPAVQGPRTQADRALYRSAVQELTTARSNLEVRE 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV   + ++  +  + ++D S I  + VVLT+GTFLRGVIHIG +    GRMGD PS +
Sbjct: 124 GEVVDLSLDRGRVDGVTLKDGSRISATAVVLTSGTFLRGVIHIGNVAQAGGRMGDLPSIA 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L      +D   GRLKTGTP RLDG+TI WD  E+Q AD     FSFM      +QI CG
Sbjct: 184 LAERLSSYDLPLGRLKTGTPPRLDGRTIHWDGLERQDADVEPELFSFMHHSPFVKQIACG 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I +N+K SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL 
Sbjct: 244 ITHTNPQTHEVIKKNLKRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP ++Q +++ +I GLE   I++PGYAIEYDYI+P+ L   LE K++ 
Sbjct: 304 DHTIYPNGISTSLPVDVQEEYVHSIVGLEDAKILQPGYAIEYDYIDPRSLSTQLELKRMP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQG+VAG+N+A + N  D + F R+ SYIGVMIDDLT +GV 
Sbjct: 364 GLFLAGQINGTTGYEEAAAQGMVAGLNAAAQVNSRDPVLFDRSTSYIGVMIDDLTVRGVS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP G  +GC+ + R   F     E +  R +L  +
Sbjct: 424 EPYRMFTSRAEFRLSLRADNADQRLTPFGRGVGCVEDERWSVFINKTNELDHGREVLLGI 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +S++L+   +    DG  RT  + L+    ++ +L  + P   K    +  +L+ ++ 
Sbjct: 484 SASSRDLNKAGVKVSIDGPKRTLADALTIAGTTVNDLAELAPQLSKIPKDIASQLERDAL 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQM + + +K +  +LIP D +Y S+  LSNELK KL    P NL QAS+I+G+
Sbjct: 544 YSHYVDRQMRDIEGMKRDSCKLIPNDLNYGSISGLSNELKSKLKTALPDNLAQASRIDGI 603

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAAL L+   IKK   +
Sbjct: 604 TPAALMLVAAEIKKRQTR 621


>gi|329891180|ref|ZP_08269523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas diminuta ATCC 11568]
 gi|328846481|gb|EGF96045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas diminuta ATCC 11568]
          Length = 637

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/613 (53%), Positives = 424/613 (69%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DV+VIGGGHAGCEAA  AA+ G  T L+T K  TIG MSCNPAIGGLGKGHLVREI
Sbjct: 12  DHTFDVVVIGGGHAGCEAATAAARAGVRTLLLTQKLETIGEMSCNPAIGGLGKGHLVREI 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G
Sbjct: 72  DALDGVMGRLADVSGIQFRMLNRSKGAAVRGPRSQIDRRLYREAMQAELADYPNLTLMAG 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
              G     + +  +       IR   VVLTTGTFL GVIH G L+IPAGR G+ PS  L
Sbjct: 132 TAEGLILNGDRVVGVTTGAGETIRAGAVVLTTGTFLNGVIHRGDLRIPAGRFGEDPSTGL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                  D   GRLKTGTPARLDG+TI WD+ E Q AD++  PFSF+TD+I   QI CG+
Sbjct: 192 AGDLHDADLMMGRLKTGTPARLDGRTIAWDRLEMQAADDQPAPFSFLTDRIEVPQIACGV 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETHRII EN+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+ 
Sbjct: 252 THTTEETHRIIAENLGESAVYGGRLSGRGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDD 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST++ +  Q  F+ T+PGLEKV + R GYAIEYDY++P+EL P LE KK  G
Sbjct: 312 PSVYPNGISTSVSDATQLAFLHTMPGLEKVEVFRFGYAIEYDYVDPRELTPALEVKKRPG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEA AQGL+AG+N+AR +   D +   R  +YIGVMIDDL ++GV E
Sbjct: 372 LYLAGQINGTTGYEEAGAQGLIAGLNAARAAAGSDPLILGRDQAYIGVMIDDLVTRGVTE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR++LR DNAD RLTP+G++ G +   R K +       +    + +   
Sbjct: 432 PYRMFTSRAEYRLTLRADNADQRLTPLGIEAGIVSADRAKVWLDKADRLDRANRVSRETQ 491

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K   +  I+   DG+ R+  + L++P  S+    S+ P+   +++ V E+++I++ Y
Sbjct: 492 FTPKEAGALGITVNADGQRRSIRDLLAFPTVSLDQFVSVRPEIADWTAAVREQVEIDAVY 551

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +A+ ++ EE   +P D DY+++ ALSNE++EKL++++P  L QA +IEGMT
Sbjct: 552 AGYLDRQAQDAEALRREEGLSLPADLDYAAIGALSNEVREKLAMIRPLTLGQAGRIEGMT 611

Query: 603 PAALNLLLIYIKK 615
           P AL  LL ++KK
Sbjct: 612 PGALTALLAHVKK 624


>gi|75674296|ref|YP_316717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrobacter winogradskyi Nb-255]
 gi|123614358|sp|Q3SWH6|MNMG_NITWN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|74419166|gb|ABA03365.1| Glucose-inhibited division protein A subfamily [Nitrobacter
           winogradskyi Nb-255]
          Length = 623

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/612 (53%), Positives = 429/612 (70%), Gaps = 1/612 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA +A+ GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SFDVIVIGGGHAGCEAAAASARTGARTALVTHRFATIGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLM R+ADA GIQFR+LN +KGPAVRGPR Q DR+LY  AMQ  I    NL+VI GE 
Sbjct: 64  LDGLMARIADAGGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQAAIRETANLEVIDGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ + + D   I+ + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DDLIVSGGRIAGVRLTDGRRIKSAAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALGLSA 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS +T +IT  QI+CGITR
Sbjct: 184 SFERIGFALGRLKTGTPPRLDGTTIDWAAVEMQPGDDPPEPFSVLTARITTPQIQCGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S IYSG I S GPRYCPSIEDK+VRFG+R+GHQ+FLEPEGL+   
Sbjct: 244 TTPATHDLIRTNVHRSPIYSGQITSSGPRYCPSIEDKVVRFGDRDGHQVFLEPEGLDDAT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE V + RPGYAIEYD+++P+EL PTL+T+++ GLF
Sbjct: 304 VYPNGISTSLPEEVQLAILATIPGLENVKMTRPGYAIEYDHVDPRELEPTLQTRRMRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D + F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDPVVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      +    SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDRGIALGCVGAGRAAYHRAKMAALQAAKQGAMSLSVT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +S  +DG  R+A+E LSYP+   + + +I P+       + E L+I++ Y  
Sbjct: 484 PNEAARHGLSLNRDGHRRSAFELLSYPEIGWREVAAIWPELSAIDPAIAEHLEIDAKYDV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L+  + DYS++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLKRQAADVEAFRRDEG-LVLTEIDYSAVPGLSNEARNRLEKAQPLTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKN 616
           AL +L  Y+++ 
Sbjct: 603 ALGILAAYLRRE 614


>gi|158426333|ref|YP_001527625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azorhizobium caulinodans ORS 571]
 gi|172047933|sp|A8I266|MNMG_AZOC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158333222|dbj|BAF90707.1| glucose-inhibited division protein A subfamily [Azorhizobium
           caulinodans ORS 571]
          Length = 625

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/622 (53%), Positives = 448/622 (72%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++++DV+V+GGGHAGCEAAA AA+LGA TAL+TH+  TIG+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSKAFDVMVVGGGHAGCEAAAAAARLGARTALVTHRADTIGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  + +Q NL++++
Sbjct: 61  IDALDGLMGRVADQGGIQFRLLNRRKGPAVRGPRAQADRKLYARAMQVALAAQPNLEIVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE       +  I+ + + D     C  VVLTTGTFL G+IH+G+++IPAGR+G++P+  
Sbjct: 121 GEADDLLVTEGRITGLALTDGRTFGCGAVVLTTGTFLNGLIHMGEVQIPAGRIGEAPARG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +     GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  + N Q+ CG
Sbjct: 181 LSGTLARLGLTLGRLKTGTPPRLDGRTIDWASLEMQPGDDDPEPFSALTTALPNPQVSCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  SA+YSG I+S GPRYCPSIEDK+VRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTQATHDVIRANLSRSAMYSGRIESTGPRYCPSIEDKVVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE++Q   + TIPGLE+V + RPGYAIEYD+++P+EL PTLE K+  
Sbjct: 301 DPTVYPNGISTSLPEDVQLAVLATIPGLERVVMSRPGYAIEYDHVDPRELEPTLEAKRAP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AG+N+AR++   + +   R + YIGVM+DDL ++GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLLAGLNAARRAGGGEGVVIDRAEGYIGVMVDDLVTRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LG +G  R   F + +   +  R   ++L
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTQRGLDLGLVGTERAAVFGRRMAALDAARERARTL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   ++  +DG+ R+A++ L+YPD +++ L  I P+       +  +L+I++ 
Sbjct: 481 NITPNEAAKHGLALNKDGQRRSAFDLLAYPDITLETLAGIWPEFGALEPAIGAQLEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   ++ +E  ++P +  Y  LP LSNELK KL+ ++P  + QA ++EGM
Sbjct: 541 YAVYLDRQAADIATLRRDEDLVLPDELGYDGLPGLSNELKAKLTRVRPRTIGQAGRMEGM 600

Query: 602 TPAALNLLLIYIKKNTVKLNEI 623
           TPAAL LL+ Y ++   K +E+
Sbjct: 601 TPAALALLVTYARRTGSKKDEV 622


>gi|126724525|ref|ZP_01740368.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
 gi|126705689|gb|EBA04779.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
          Length = 625

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/613 (54%), Positives = 438/613 (71%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG +AA  AA++GA TAL+T    +IG MSCNPAIGGLGKGHLVREIDA+
Sbjct: 9   FDVIVIGGGHAGADAAHAAARMGAKTALLTLTKESIGVMSCNPAIGGLGKGHLVREIDAM 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  MQ E+ + ENL +I+GEV 
Sbjct: 69  DGLMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRKTMQAELAATENLSIIEGEVI 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I+  V+ D + I    V+LTTGTFLRGVIHIG +  P GRMGD PS  L   
Sbjct: 129 DLIQDGDRINGAVLGDGAEIWAKAVILTTGTFLRGVIHIGDVSRPGGRMGDKPSIKLAER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              F+   GRLKTGTP RLDG+TI WD  E Q  D+    FSF++  I+  Q+ CGI  T
Sbjct: 189 LDGFNLPLGRLKTGTPPRLDGRTINWDILETQPGDDDPTLFSFLSRSISAPQVNCGIAHT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH +I EN++ SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPEG + + V
Sbjct: 249 NEKTHDLIRENLERSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQVFLEPEGADDNTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q+ ++ ++ GLE   I++PGYAIEYDYI+P+ L PTLE + + GL+L
Sbjct: 309 YPNGISTSLPEDVQYAYVNSMQGLENAVILQPGYAIEYDYIDPQALRPTLELESVPGLYL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+N+A  +   + I F R  SYIGVMIDDL ++GV EPYR
Sbjct: 369 AGQINGTTGYEEAAAQGLVAGLNAAAFALGREPIYFDRAQSYIGVMIDDLVTRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTPIG+ LGC+GE R K F   +++ N  +  L  ++LT 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPIGISLGCVGETRTKTFTNKLEKLNLTKFSLSEVILTP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             +    +  K+DG  R A+E LS+PD S + LF + P+     S + ++++ ++ Y  Y
Sbjct: 489 NQIEPLGVKIKKDGVKRNAFELLSFPDISFETLFPVAPEFANIESEIRDQIERDALYHNY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + + ++ +E   IP+DF+Y+ +  LSNELK KLS +KP  L QA +++GMTPAA
Sbjct: 549 IERQAKDVQAMRRDEAHKIPQDFNYAEVSGLSNELKSKLSHVKPRTLGQAGRVDGMTPAA 608

Query: 606 LNLLLIYIKKNTV 618
           L LLL  I+++  
Sbjct: 609 LTLLLTNIRRSAA 621


>gi|240138141|ref|YP_002962613.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens AM1]
 gi|240008110|gb|ACS39336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens AM1]
          Length = 624

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/599 (56%), Positives = 424/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ + + D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVRSGRVAGVTLTDGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEEPAVGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSVRAAHFATSQAALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A+  LSYP+   + L ++ P+     S V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFRILSYPEIGWERLAAVWPELAAVPSRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|163851010|ref|YP_001639053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium extorquens PA1]
 gi|163662615|gb|ABY29982.1| glucose inhibited division protein A [Methylobacterium extorquens
           PA1]
          Length = 624

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/617 (55%), Positives = 437/617 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ +++ D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVRSGRVAGVMLADGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEEPALGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSVRAAHFAASQGALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A++ LSYP+   + L ++ P+       V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFQILSYPEIGWERLAAVWPELAAVPPRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TPA
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRAKLDGVRPTTLGQAARIEGVTPA 606

Query: 605 ALNLLLIYIKKNTVKLN 621
           AL LL  + ++  V+++
Sbjct: 607 ALTLLAAHARRGRVQVS 623


>gi|329847387|ref|ZP_08262415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Asticcacaulis biprosthecum C19]
 gi|328842450|gb|EGF92019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Asticcacaulis biprosthecum C19]
          Length = 622

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/611 (52%), Positives = 419/611 (68%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  +A++GA T L+TH+  T+G MSCNPAIGGLGKGHLVREIDAL
Sbjct: 7   WDVIVVGGGHAGCEAATASARMGAKTLLLTHRFDTLGEMSCNPAIGGLGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR+AD AG+QF+VLN  KGPAVRGPR Q DR+LYR A+Q E+   ENL +I+G V 
Sbjct: 67  DGIMGRMADVAGMQFKVLNRSKGPAVRGPRAQIDRKLYRQAVQAELSQTENLTIIEGAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +  I+   +       R   VVLTTGTFLRG+IHIG  + PAGR GD P+N L   
Sbjct: 127 DLILDNGIVCGAIDAAGQNYRAKAVVLTTGTFLRGMIHIGDKRTPAGRWGDQPANGLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 D GRLKTGTPARL+GKTI WD+ E+Q  D  + PFS++T  I   QI CGIT T
Sbjct: 187 LYDLKLDMGRLKTGTPARLEGKTIHWDRLEQQLGDNPITPFSYLTPSIERDQIACGITYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII E ++ SA+Y G I   GPRYCPSIEDK+V+F ++  HQIFLEPEG + D V
Sbjct: 247 NAETHRIIAERLQESAVYGGHIAGRGPRYCPSIEDKVVKFADKTSHQIFLEPEGYDDDTV 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST++ E  Q  F+RTI GLE V + R  YAIEYDY++P+EL P+LE K++ GLFL
Sbjct: 307 YPNGISTSVSETTQDAFLRTIVGLEDVVVKRYAYAIEYDYVDPRELNPSLELKRLPGLFL 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+A ++     +   R ++YIGVMIDDL ++GV EPYR
Sbjct: 367 AGQINGTTGYEEAGAQGLMAGLNAAVRAGGQAPVVLGRDEAYIGVMIDDLITRGVTEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLT  G+ +G +G RRQ  + +       +R     L +  
Sbjct: 427 MFTSRAEFRLSLRADNADQRLTDKGVAIGVVGARRQTAWTEKRDALAGIRQRAAELNVGP 486

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           K   + +I    DG+ R   + ++Y   S + L ++ P+   +   + E+++I++ YA Y
Sbjct: 487 KEALNQAIHVNGDGQRRNVMQLMAYDSCSREKLEALWPEISAWPDALYEQVEIDALYAGY 546

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
            GRQ  E +  + +E   +P D DY ++  LS+E +EKL+ ++P  L QA +IEG+T  A
Sbjct: 547 MGRQKAEIETFRKDENLALPADLDYMAIVGLSHEAREKLNRIRPQTLGQAGRIEGITQGA 606

Query: 606 LNLLLIYIKKN 616
           L  LL Y++ +
Sbjct: 607 LTTLLFYVRNH 617


>gi|254467057|ref|ZP_05080468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium Y4I]
 gi|206687965|gb|EDZ48447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium Y4I]
          Length = 624

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/603 (53%), Positives = 428/603 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIV+GGGHAG EAA  AA++G  TAL+T   + IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSAYDVIVVGGGHAGSEAAHAAARMGVRTALVTLNRNGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M R   +QENLD++
Sbjct: 61  EIDALDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRAIYRREMLRLTEAQENLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEV  F  + N ++ +++ D S I  ++V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 EGEVTDFLLQGNAVAGVILADGSEIPSNSVILTSGTFLRGVIHIGDVSKPGGRMGDKPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI WD  E Q  DE  + FSF+T   + +Q+ C
Sbjct: 181 KLAERLDSFGLPLGRLKTGTPPRLDGRTINWDILEAQPGDEDPVFFSFLTKAASAKQVSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG+
Sbjct: 241 GITHTNAKTHEIIQKNLGRSAMYGGHIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VYPNGIST+LP+++Q  ++ +I GLE+  I++PGYAIEYDY++P+ L   L  K +
Sbjct: 301 TDHTVYPNGISTSLPQDVQEDYVHSILGLEQAVILQPGYAIEYDYVDPRALTLELRLKDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG+VAG+N+AR S     + FSR++SYIGVMIDDLT+ GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGMVAGLNAARASLGEGPVSFSRSNSYIGVMIDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+ +++GC G++RQ  F +         S+L++
Sbjct: 421 AEPYRMFTSRAEFRLSLRADNADQRLTPLAIEIGCAGKQRQAAFLEKSDRLGQACSVLEA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K +S+  I   QDG  RT  E L++PD   +++  + P+       + ++++ ++
Sbjct: 481 KSFTPKQVSAAGIRVNQDGNRRTGMEVLAFPDVEFEDIVPLMPELEGIDPDIRQQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +K +E  +IP  + Y  +  LS EL++KLS+ +P  L QA++I+G
Sbjct: 541 LYANYIARQEREISAMKRDEGYVIPTGYSYDGIEGLSKELQQKLSLARPETLAQAARIDG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|323135829|ref|ZP_08070912.1| glucose inhibited division protein A [Methylocystis sp. ATCC 49242]
 gi|322398920|gb|EFY01439.1| glucose inhibited division protein A [Methylocystis sp. ATCC 49242]
          Length = 616

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/615 (54%), Positives = 428/615 (69%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + +DVIV+GGGHAGCEAAA +A+LGA TAL+TH  ++IG+MSCNPAIGGLGKG LVR
Sbjct: 1   MSVKEFDVIVVGGGHAGCEAAAASARLGARTALVTHSRASIGAMSCNPAIGGLGKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA GIQFRVLN  KGPAVRGPR QADR+LYR AM   I   +NL V+
Sbjct: 61  EIDALDGLMGRVADAGGIQFRVLNRSKGPAVRGPRAQADRKLYRNAMLAAIEGVDNLTVL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V     E   +  +       IR + VV+TTGTFL GVIHIG  + PAGRMGD P+ 
Sbjct: 121 EGAVEDLLVEGFKVRGVRTASGEDIRAAAVVITTGTFLAGVIHIGDERTPAGRMGDPPAI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     +  F  GRLKTGTP RLDG+TI W++ E Q+ DE   PFS +T  I NRQI C
Sbjct: 181 GLSRRIREAGFAVGRLKTGTPPRLDGRTIRWEELETQWGDESPEPFSSLTTHIANRQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRT    H II  ++  S + +G I   GPRYCPSIEDK+VRF +R+ HQIFLEPEGL
Sbjct: 241 AITRTTPTAHEIIRSDLHLSPMRTGAISGPGPRYCPSIEDKVVRFADRDAHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNG+ST+LP   Q  FI  IPGLE   IIRPGYAIEYDY++P+EL P+LETK++
Sbjct: 301 DDDTVYPNGVSTSLPLATQRAFINAIPGLEDARIIRPGYAIEYDYVDPRELLPSLETKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LFLAGQINGTTGYEEAAAQGLVAG+N+AR +     + F R ++Y+GVMIDDL ++GV
Sbjct: 361 QRLFLAGQINGTTGYEEAAAQGLVAGLNAARLAAGRGAVIFDRAEAYLGVMIDDLVTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ LGC+G  R   FAK  ++ +  R+LL+S
Sbjct: 421 SEPYRMFTSRAEYRLSLRADNADERLTPKGVGLGCVGALRAATFAKRAEKLSRARALLES 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L LTS       +   QDG+ R+A+  L++P  ++  L  I  +  +     +ER++ ++
Sbjct: 481 LSLTSSAALRHGLPVNQDGQRRSAFALLAFPSVTLARLQEIWSELAEIDPSTVERVETDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +    + +E+  +P+  DY S+  LS EL+ KL+ L+P  + QA +I+G
Sbjct: 541 RYSVYLDRQQADIDSFRRDEQLALPESLDYGSIAGLSAELRGKLTYLRPRTIGQAQRIDG 600

Query: 601 MTPAALNLLLIYIKK 615
           MTP+AL LL    ++
Sbjct: 601 MTPSALTLLAARARR 615


>gi|83950774|ref|ZP_00959507.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
 gi|83838673|gb|EAP77969.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
          Length = 621

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/615 (54%), Positives = 437/615 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIV+GGGHAG +AA  AA++GA TAL+T    +IG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MKHDFDVIVVGGGHAGADAAHAAARMGARTALVTLTFESIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  MQRE+    NL +++
Sbjct: 61  IDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYREEMQREMRDCPNLTIVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE A F      +  + + D S I  S VVLTTGTFLRG+IHIG++  P GRMGD PS  
Sbjct: 121 GEAADFLMSGAEVRGVRLADGSEISASAVVLTTGTFLRGLIHIGQVSRPGGRMGDKPSVK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L     +F    GRLKTGTP RLDG TI W   E Q  D+    FSF++ K++ +QI CG
Sbjct: 181 LAERIDQFGLPLGRLKTGTPPRLDGTTIDWSDLEVQPGDDDPTLFSFLSSKVSAQQISCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II +NI  SA+YSG I+  GPRYCPSIEDKIVRF E++ HQ+FLEPE L+
Sbjct: 241 ITHTNEQTHEIIEKNIGKSAMYSGRIEGVGPRYCPSIEDKIVRFAEKSSHQVFLEPESLS 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            +V+YPNGIST+LPE+IQH ++R+I GLE V I++PGYAIEYDY++ + L   L  + + 
Sbjct: 301 DNVIYPNGISTSLPEDIQHDYVRSIKGLENVTILQPGYAIEYDYVDSRALDSRLAVRDVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D I FSR++SYIGVM+DDL ++GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAAAVALGRDPITFSRSNSYIGVMVDDLITRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP+G+++GC+G  R++ F   +      R  ++S+
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADQRLTPLGIEVGCVGAERKQAFEAKMSALAEARQDMESV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           V T K L +   +  QDGK R  YE L+   F    L ++ P+         ++L  ++ 
Sbjct: 481 VFTPKELVTAGHAVNQDGKRRNGYELLALQQFDFDALVALRPEWGAIDEASRDQLSKDAM 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   +K +E++ IP DFDY ++  LSNELK KL+  +P N+ QA +I+GM
Sbjct: 541 YANYILRQERDVAVLKRDEQQRIPTDFDYMAMEGLSNELKMKLNAARPDNIGQAGRIDGM 600

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL LLL  ++++
Sbjct: 601 TPAALTLLLAKVRQS 615


>gi|254560703|ref|YP_003067798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Methylobacterium extorquens DM4]
 gi|254267981|emb|CAX23849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens DM4]
          Length = 624

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/599 (56%), Positives = 425/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ + + D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVHSGRVAGVTLTDGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEGPAVGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSIRAAHFAASQAALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A++ LSYP+   + L ++ P+     S V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFQILSYPEIGWERLAAVWPELAAVPSRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|298293755|ref|YP_003695694.1| glucose inhibited division protein A [Starkeya novella DSM 506]
 gi|296930266|gb|ADH91075.1| glucose inhibited division protein A [Starkeya novella DSM 506]
          Length = 618

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 431/599 (71%), Gaps = 1/599 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIGGGHAG EAAA AA+LGA TAL+TH  +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SFDVVVIGGGHAGTEAAAAAARLGARTALVTHAFATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD  GIQFRVLN +KGPAVRGPR QADR+LY  AMQR I SQ NL V++GE 
Sbjct: 67  LDGLMGRVADQGGIQFRVLNRRKGPAVRGPRAQADRKLYAQAMQRAIDSQPNLSVLEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   ++ + + D   I    VV+TTGTFL G+IHIG  ++PAGRMG+ P+  L  
Sbjct: 127 DTLLMQDGRVAGLKLADGRSIGAGAVVITTGTFLNGLIHIGDRQMPAGRMGEQPARGLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S        GRLKTGTP RLDG+TI W   E Q  D    PFS +TD ITN Q++CGITR
Sbjct: 187 SLTAIGLTLGRLKTGTPPRLDGRTIDWAGLEMQDGDSPPEPFSTLTDAITNPQVKCGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  NI  SA+YSG+I+S GPRYCPSIEDKIVRFGER GHQIFLEPEGL+   
Sbjct: 247 TTPATHAVIRANIARSAMYSGNIQSVGPRYCPSIEDKIVRFGEREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q   + TIPGLE+V ++RPGYAIEYD+++P+EL PTLET+K  GLF
Sbjct: 307 VYPNGISTSLPEDVQLALLATIPGLERVAMLRPGYAIEYDHVDPRELEPTLETRKARGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+AR++  ++   F R ++YIGVMIDDL ++GV EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLVAGLNAARRAAGMEGATFDRAEAYIGVMIDDLVTRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G  LG IG  R+ R+A        +R   +S+ LT
Sbjct: 427 RMFTSRAEYRLSLRADNADQRLTARGDDLGLIGSERRARYAGKSTALARVREWSRSVALT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   ++  +DG+ R+A++ LSYP     ++  I P+A    + + E+++I++ YA 
Sbjct: 487 PAEGDRHGLTLNRDGQRRSAFDLLSYPHVGWADICRIWPEASGEDARIGEQVEIDAKYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P+  DY SL  +SNE+K KL  ++P  + QAS+I+GMTP
Sbjct: 547 YLHRQEADIASFRRDEAAQLPQ-VDYRSLAGISNEIKAKLESIRPRTIGQASRIDGMTP 604


>gi|83953077|ref|ZP_00961799.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
 gi|83842045|gb|EAP81213.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
          Length = 620

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/616 (53%), Positives = 433/616 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA+TALIT     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGANTALITMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  M  E   QENL +++GE
Sbjct: 62  ALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRAIYRREMLAETERQENLTIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S  V+ D   I  + VVLTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 122 VTDFILDNGKVSGAVLADGEQISAAAVVLTTGTFLRGVIHIGDVSRSGGRMGDKASVDLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N    F+   GRLKTGTP RLDG+TI W+K E Q  D+  + FSF+++  +  QI CGIT
Sbjct: 182 NRIDSFNLPLGRLKTGTPPRLDGRTIDWEKLESQPGDDEPVLFSFLSETTSAPQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG +  
Sbjct: 242 HTNEETHQIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGADDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE++Q  ++R++ GLE V II+PGYAIEYDY++P+ L   L  + + GL
Sbjct: 302 TIYPNGISTSLPEDVQLAYVRSMVGLENVEIIQPGYAIEYDYVDPRALDLALSVRTVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR DSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVTFSRADSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ + LGC+ + R   F+  + + +   + L +   
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIALGCVSQERVAHFSAKMAKIDAAMAELTNTPY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            SK + +  I   QDG  RT ++ L++PD + + +  I P        +  +++ ++ YA
Sbjct: 482 ASKAIEAAGIKVSQDGTKRTGFQLLAFPDVTFEQIVLINPALDAVEPEIRRQVERDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E  +IP  FDY ++  LSNEL  KLS+++P NL QA++I+GMTP
Sbjct: 542 NYIARQQRDIDLLQKDEAHVIPASFDYEAIDGLSNELTSKLSLIRPTNLAQAARIDGMTP 601

Query: 604 AALNLLLIYIKKNTVK 619
           +AL LLL ++K+ + K
Sbjct: 602 SALTLLLSHLKRGSQK 617


>gi|188580910|ref|YP_001924355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium populi BJ001]
 gi|205831532|sp|B1ZGG2|MNMG_METPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|179344408|gb|ACB79820.1| glucose inhibited division protein A [Methylobacterium populi
           BJ001]
          Length = 624

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/598 (56%), Positives = 422/598 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAAA AA++GA TAL+TH+  TIG+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 8   YDVIVVGGGHAGVEAAAAAARVGARTALVTHRAETIGTMSCNPAIGGLGKGHLVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM RVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE  
Sbjct: 68  DGLMARVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPGLTVIEGEAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++  ++ D   +    VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  +
Sbjct: 128 DLIVEAGRVAGAMLADGRRLAAGAVVITTGTFLRGLIHIGERQIPAGRVGEEPALGLART 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITRT
Sbjct: 188 LDRHGFRLGRLKTGTPPRLDGRTIDWTALEMQHADADPVPFSTLTERITTPQIACGITRT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H +I EN+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   V
Sbjct: 248 TQRVHDLIRENLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPTV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGISTALPE +Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLFL
Sbjct: 308 YPNGISTALPEVVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLFL 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGLVAG+N+AR +   +   F R +SY+GVMIDDL + GV EPYR
Sbjct: 368 AGQINGTTGYEEAAGQGLVAGLNAARLAGASELAVFDRAESYLGVMIDDLVTHGVSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT 
Sbjct: 428 MFTSRSEYRLSLRVDNADERLTPRGAALGCVGSIRAAHFAASQGALSEARTRLDTLSLTP 487

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              ++  ++  +DG  RTA++ LSYP+     L +I PD       + ERLQ +++YA Y
Sbjct: 488 NEAAAHGLALNRDGLRRTAFQLLSYPEIGWDRLAAIWPDLAAVPPRIAERLQTDATYAVY 547

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 548 LDRQQADITAFRRDEAVRLPASLDYGTIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|163745110|ref|ZP_02152470.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanibulbus indolifex HEL-45]
 gi|161381928|gb|EDQ06337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanibulbus indolifex HEL-45]
          Length = 620

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/619 (54%), Positives = 436/619 (70%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA TAL+T     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGAQTALVTMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M RE   Q+NL +++GE
Sbjct: 62  AMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRTEMLRETEGQDNLQIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S +++ D + +  ++VVLTTGTFLRGVIHIG      GRMGD  S  L 
Sbjct: 122 VVDFLMDGPAVSGVLLADGTTLNAASVVLTTGTFLRGVIHIGDESHQGGRMGDRASVKLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RLDG+TI WD  E Q  D+  + FSF++D+I+  Q+ CGIT
Sbjct: 182 ERIDSFGLPMGRLKTGTPPRLDGRTINWDILEGQPGDDEPVLFSFLSDEISAPQVACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II EN+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG++  
Sbjct: 242 HTNEATHKIIRENLGRSAMYGGHIDGVGPRYCPSIEDKVVRFADKESHQVFLEPEGVDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q  ++R++ GLE   I++PGYAIEYDYI+P+ L  TL  + + GL
Sbjct: 302 TVYPNGISTSLPADVQEAYVRSMVGLENAVILQPGYAIEYDYIDPRALSSTLGVRTVGGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR+DSYIGVMIDDLT++GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVIFSRSDSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ ++LGC    R + F + +     ++  L S + 
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIELGCASGERIETFQRKLNALTLVKEQLSSELY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-RLQIESS- 541
           T K L +  +S  QDG  RT ++ L++PD S ++L  + P   + +   IE R Q+E   
Sbjct: 482 TPKELQAAGLSVNQDGSKRTGFQVLAFPDISFEDLIPLDP---RLTDTPIEVRRQVERDA 538

Query: 542 -YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +K +E   IP DFD++SL  LSNELK K+S  +P  + QA++I+G
Sbjct: 539 LYATYIERQKKEIDLLKKDEGLRIPGDFDFASLSGLSNELKTKISAARPETMAQAARIDG 598

Query: 601 MTPAALNLLLIYIKKNTVK 619
           MTPAAL L+L  +K+   K
Sbjct: 599 MTPAALTLILARVKRGAGK 617


>gi|254453530|ref|ZP_05066967.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 238]
 gi|198267936|gb|EDY92206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 238]
          Length = 622

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/614 (53%), Positives = 422/614 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVI+IGGGHAGCEAA  +A+ G  T LIT + + +G MSCNPAIGGLGKGHLVRE
Sbjct: 1   MKHTYDVIIIGGGHAGCEAAHASARSGVRTLLITLRLTDLGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD AGIQFR+LN +KGPAV+GPRTQADR LYR A+Q    ++ NLD+ +
Sbjct: 61  IDALDGIMGRAADRAGIQFRLLNRRKGPAVQGPRTQADRALYRNAVQELTAARSNLDLRE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   ++ +V++D S I  +TVVLT+GTFLRGVIHIG +    GRMGD PS +
Sbjct: 121 GEVVDLTLENGRVTGVVLKDGSKISATTVVLTSGTFLRGVIHIGDVAKAGGRMGDLPSIA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L      +D   GRLKTGTP RLDG+TI WD  E+Q AD     FSFM      +QI CG
Sbjct: 181 LAERLSSYDLPLGRLKTGTPPRLDGRTINWDGLERQDADVDPELFSFMHRTTFAKQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN ETH II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPE L 
Sbjct: 241 ITHTNSETHEIIAKNLDRSAMYGGHIDGVGPRYCPSIEDKVVRFADKKSHQIFLEPESLT 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP ++Q Q++ +I GLE   I++PGYAIEYDYI+P+ L   LE K++ 
Sbjct: 301 DYTIYPNGISTSLPVDVQEQYVHSIVGLENAKILQPGYAIEYDYIDPRSLSTQLELKRMP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQG+VAG+N+A  +   D + F R+ SYIGVMIDDLT +GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGIVAGLNAAACAGNCDPVLFDRSTSYIGVMIDDLTVRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT  G  +GC+ + R   ++K   E +  R  L  +
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADQRLTSFGRSVGCVEDARWMVYSKKKIELDRGREELSGI 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +S+ L+   +    DG  RT  + L+    ++ +L +I P   +    +  +L+ ++ 
Sbjct: 481 TASSRALNDVGVKVSVDGPKRTLADALTIAGTTVNDLAAIAPQLSEIPKDIASQLERDAL 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQM + + +K +  +LIP +  Y S+  LSNELK KL    P NL QA++I+G+
Sbjct: 541 YSHYVERQMRDIEGMKRDSGKLIPHNMSYDSIAGLSNELKSKLKTALPDNLSQAARIDGI 600

Query: 602 TPAALNLLLIYIKK 615
           TPAAL L+   IKK
Sbjct: 601 TPAALMLVAAEIKK 614


>gi|91762517|ref|ZP_01264482.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718319|gb|EAS84969.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 623

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/616 (53%), Positives = 433/616 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S++V+VIGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   SFEVVVIGGGHAGCEAAAASARLGINTALFTHKIETIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAV+GPRTQ+DR LYR  MQ ++L+  NL +    V
Sbjct: 66  LDGVMGEVADKSGIQFRLLNRSRGPAVQGPRTQSDRSLYRKYMQEKLLNYCNLSIFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F   KN IS    +    I CS ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IRFIFNKNTISGFKTKSGKKILCSKLILTTGTFLNGLIHIGDERTPAGRFNEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K+DF  GRLKTGTP RLD +TI +D  E+QFADE    FSF+T K  N+Q+ C +T 
Sbjct: 186 QLEKYDFKIGRLKTGTPPRLDTRTIKYDNLEEQFADEDPYFFSFLTKKNLNKQVSCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+K SA+YSG I+  GPRYCPSIEDKIV+F +++ HQI+LEPEGLN   
Sbjct: 246 TNEKVHKIIQKNLKRSAMYSGSIQGVGPRYCPSIEDKIVKFADKDRHQIYLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q +    I GLE V IIRPGYAIEYDYI+P+ELF TLETKKI  L+
Sbjct: 306 IYPNGISTSLPEDVQQEICNNINGLENVKIIRPGYAIEYDYIDPRELFLTLETKKIQNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    K +     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSFKKQEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G+++G I + R+  F    ++   +  ++   +++
Sbjct: 426 RMFTSRAEYRLSLRADNADQRLTNKGIEIGLISKEREDIFKDKEKKLGIISKIMGESLIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + S +I   +DG  R + E L+    +++ +  I P+   F   + E+++I + Y  
Sbjct: 486 PTKIKSFNIKIAKDGILRKSNEILTQKGVNMKKIREIWPEIPYFDKKIDEQIEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP++ +Y  L  LSNE+K K   +KP  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLVIPENLNYDDLSGLSNEVKSKFEQIKPQTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVKL 620
           A+ +LL Y+K+ ++KL
Sbjct: 606 AVYILLSYVKRKSIKL 621


>gi|126730103|ref|ZP_01745915.1| glucose-inhibited division protein A [Sagittula stellata E-37]
 gi|126709483|gb|EBA08537.1| glucose-inhibited division protein A [Sagittula stellata E-37]
          Length = 625

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/615 (53%), Positives = 435/615 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+V+G GHAG +AAA +A++GA TAL+T K S +G MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   TFDVVVVGAGHAGADAAAASARMGAKTALVTLKKSDLGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAV+GPR QADR+LY   MQ E+ + ENL++++ EV
Sbjct: 68  LDGLMGRVADYAGIQFRLLNRRKGPAVQGPRAQADRKLYAFKMQEELTAIENLEIVEAEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  E   ++ +V++D   I   +VVLT+GTFLRG+IHIG    P GR+GD P+  L  
Sbjct: 128 VDFTIENGRVAGVVLRDGQRISSGSVVLTSGTFLRGIIHIGDRSYPGGRVGDDPAVRLAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +     GRLKTGTP RL+GKTI WD  E+Q  D+  + FSF++     RQI CGIT 
Sbjct: 188 RIEELKLPLGRLKTGTPPRLNGKTISWDALEQQPGDDDPVLFSFLSKAPLARQISCGITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II +N+  SA+Y G I+  GPRYCPSIEDK+VRF E+  HQ+FLEPEGL+TD 
Sbjct: 248 TNARTHDIIRQNLSRSAMYGGHIEGTGPRYCPSIEDKVVRFAEKESHQVFLEPEGLDTDT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q  ++R+I GLEKV I++PGYAIEYD+++P  L  TL  K + GL+
Sbjct: 308 VYPNGISTSLPADVQEDYVRSITGLEKVEILQPGYAIEYDFVDPTSLDSTLRVKDLEGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D I FSRTDSYIGVMIDDLT++ V EPY
Sbjct: 368 LAGQINGTTGYEEAAAQGLVAGLNAAAFALGRDRINFSRTDSYIGVMIDDLTTRSVTEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP  + LG   E R   F + ++  +  R LL+    T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPKAIDLGIASESRIGSFTRKMEALSSGRQLLEETTFT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + +  I   QDG  R+ ++ LS+ D ++ +L  + P   +       +++ E+ YA 
Sbjct: 488 PSQVKTLGIVVNQDGARRSGFQLLSFKDVTLGHLSQLEPAFLEIDEETGAQIEKEALYAN 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ +E   IP DFD+ SLP+LSNEL++KL  ++P ++ QAS+IEGMTPA
Sbjct: 548 YLDRQAKDVDTLRRDEAVRIPLDFDFGSLPSLSNELRKKLEDVRPESIAQASRIEGMTPA 607

Query: 605 ALNLLLIYIKKNTVK 619
           AL L+L  +++   K
Sbjct: 608 ALMLILAKLRQGERK 622


>gi|170739705|ref|YP_001768360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium sp. 4-46]
 gi|205831535|sp|B0UJI8|MNMG_METS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168193979|gb|ACA15926.1| glucose inhibited division protein A [Methylobacterium sp. 4-46]
          Length = 627

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/603 (55%), Positives = 439/603 (72%), Gaps = 1/603 (0%)

Query: 2   INRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           I+R+ +DVIV+GGGHAG EAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVR
Sbjct: 4   IDRTRFDVIVVGGGHAGVEAAAAAARLGAATALVTHRRATLGAMSCNPAIGGLGKGHLVR 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDGLMGRVAD AGIQFR+LN +KGPAVRGPR+QADR+LY  AMQ  + +  NL +I
Sbjct: 64  EVDALDGLMGRVADRAGIQFRLLNRRKGPAVRGPRSQADRKLYARAMQEALAATPNLSLI 123

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE       +  ++ IV+ D   + C+ VVLTTGTFLRG+IHIG+  +PAGR+G++P+ 
Sbjct: 124 EGEAHDLAVVEGRVTGIVLADGRALPCAAVVLTTGTFLRGLIHIGERTMPAGRVGEAPAL 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +  F  GRLKTGTPARLDG+TI W   EKQ AD+  +PFS +TD+IT  QIEC
Sbjct: 184 GLAATLDRHGFGLGRLKTGTPARLDGRTIDWAGIEKQAADDEPVPFSSLTDRITTPQIEC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R+GHQIFLEPEGL
Sbjct: 244 GVTRTTQAVHDLIRANLHRSPMYSGGITSRGPRYCPSIEDKVVRFGDRDGHQIFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +YPNGISTALPEE+Q   +R IPG E+  ++RPGYAIEYDY++P+EL PTL+T+++
Sbjct: 304 DDPTIYPNGISTALPEEVQRAVLRLIPGCERAAMLRPGYAIEYDYVDPRELDPTLQTRRV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLFLAGQINGTTGYEEAA QG++AGIN+AR +         R +SYIGVMIDDL + GV
Sbjct: 364 AGLFLAGQINGTTGYEEAAGQGILAGINAARLAAGSALAVLDRAESYIGVMIDDLVTHGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSR+EYR+SLR DNAD RLT  G+ LGC+G  R + FA+  Q     R+ L +
Sbjct: 424 SEPYRMFTSRSEYRLSLRVDNADERLTGRGIALGCVGAARARHFAESQQALAAARARLDA 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L +T    +   ++  +DG  R+A++ LSYP+     L +I P+       V ERL+ ++
Sbjct: 484 LAITPSEAARHGLALNRDGIRRSAFQLLSYPEIDWPRLAAIWPELAAVPPRVAERLRTDA 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +    + +E   +P   DY  +  LSNEL+ KL  ++P  L QA++IEG
Sbjct: 544 AYAVYLDRQRSDIAAFRRDEAVRLPASLDYGRIAGLSNELRLKLDCVRPHTLGQAARIEG 603

Query: 601 MTP 603
           +TP
Sbjct: 604 VTP 606


>gi|218529837|ref|YP_002420653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium chloromethanicum CM4]
 gi|218522140|gb|ACK82725.1| glucose inhibited division protein A [Methylobacterium
           chloromethanicum CM4]
          Length = 624

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/599 (56%), Positives = 424/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVI++GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIIVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ +++ D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVHSGRVAGVMLTDGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEEPAVGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGLN   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLNDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+ PGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILCPGYAIEYDYVDPRELDATLQTKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSVRAAHFAASQAALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A++ LSYP+   + L ++ P+       V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFQILSYPEIGWERLAAVWPELAAVPPRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRAKLDGVRPTTLGQAARIEGVTP 605


>gi|114762197|ref|ZP_01441665.1| glucose-inhibited division protein A [Pelagibaca bermudensis
           HTCC2601]
 gi|114545221|gb|EAU48224.1| glucose-inhibited division protein A [Roseovarius sp. HTCC2601]
          Length = 622

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/580 (53%), Positives = 415/580 (71%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T   + IG MSCNPAIGGLGKGHLVREIDALDG+MGRVAD AGIQ+R+LN 
Sbjct: 26  RMGARTALVTLTEAGIGVMSCNPAIGGLGKGHLVREIDALDGVMGRVADQAGIQYRLLNR 85

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KGPAV+GPR QADR+LYR AM RE+ +  NL ++QGEV       + +  +++ D S +
Sbjct: 86  RKGPAVQGPRAQADRKLYREAMLREMKATPNLTIVQGEVVDLMMSGDTVEGVILDDGSEL 145

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           RC +VVLTTGTFLRGVIHIG    P GRMGD PS  L      F  + GRLKTGTP RLD
Sbjct: 146 RCGSVVLTTGTFLRGVIHIGDKSRPGGRMGDRPSVRLAERIDHFGLELGRLKTGTPPRLD 205

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI W + E+Q  DE  + FSF++     RQI CGIT TN  TH II +N+  SA+Y G
Sbjct: 206 GRTIDWSQLEEQPGDEEPVLFSFLSQAPAARQISCGITHTNERTHEIIRDNLDRSAMYGG 265

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   +YPNGIST+LPEE+Q  ++R+
Sbjct: 266 HIEGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLDDHTIYPNGISTSLPEEVQLDYVRS 325

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I++PGYAIEYD+++P+ L   L  + + GLFLAGQINGTTGYEEAAAQGLVA
Sbjct: 326 IFGLEHAEILQPGYAIEYDFVDPRSLDLRLAVRNVGGLFLAGQINGTTGYEEAAAQGLVA 385

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A  +     + F R++SYIGVMIDDLTS+GV EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 386 GVNAAMDALGQGSVHFGRSESYIGVMIDDLTSRGVSEPYRMFTSRAEFRLSLRADNADQR 445

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  ++LGCI E R+  F++ +++ +  R LL+S     K+L +  I    DG+ R  +
Sbjct: 446 LTPRAIELGCISEERRAAFSEKLEKLSSGRELLESRQFAPKDLGTMGIQVSPDGQKRNGF 505

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + L++PD +++ L +  P      + + ++L+ ++ YA Y  RQ  +   ++ +E   IP
Sbjct: 506 QLLAFPDVTMKTLVAGEPAFEGMDAEIAQQLERDALYANYIARQQKDVDALRRDEAMTIP 565

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
           + F+++++  LSNELK KLS+ +P NL QA+K++GMTPAA
Sbjct: 566 RAFEFAAVEGLSNELKHKLSLARPENLAQAAKVDGMTPAA 605


>gi|254488415|ref|ZP_05101620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter sp. GAI101]
 gi|214045284|gb|EEB85922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter sp. GAI101]
          Length = 623

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/616 (53%), Positives = 433/616 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  AA++G +TAL+T     IG MSCNPAIGGLGKGHLVREID
Sbjct: 5   KHFDVIVIGGGHAGAEAAHAAARMGVATALVTMSRDGIGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+MGRVAD AGIQFR+LN +KGPAV+GPRTQADR++YR  M  E   QENL +I+GE
Sbjct: 65  AMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRTQADRKIYRTEMLLETERQENLTIIEGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S +V+ D S +    V+LTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 125 VVDFMMQGEAVSGVVLADQSEVFAKAVILTTGTFLRGVIHIGDVSRSGGRMGDKASVKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F+   GRLKTGTP RLDG+TI W K E Q  DE    FSF++   T +QI CGIT
Sbjct: 185 ERIDSFNLPLGRLKTGTPPRLDGRTIDWAKLESQPGDEEPTLFSFLSTAPTAKQISCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  SA+Y G I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEG++  
Sbjct: 245 HTNEKTHDIIRENLSRSAMYGGHIEGVGPRYCPSIEDKVVRFSDKTSHQVFLEPEGVDDH 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE++Q  ++R++ GLE V I++PGYAIEYDY++P+ L  TL+ + + GL
Sbjct: 305 TIYPNGISTSLPEDVQLAYVRSMEGLENVEILQPGYAIEYDYVDPRALDLTLKVRSVPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAA QGLVAG+N+A  S   D + FSR+ SYIGVMIDDLT++GV EP
Sbjct: 365 YLAGQINGTTGYEEAAGQGLVAGLNAALASQGKDPVIFSRSQSYIGVMIDDLTTRGVTEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ ++LGC    R + F++ ++       LL+S   
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTPLAIELGCTTTTRAEVFSEKMKRLKEATDLLQSDKF 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K +  + I   QDG  RT ++ LS+PD   ++L  + P           +++ ++ YA
Sbjct: 485 SPKVIEESGIKINQDGSKRTGFQLLSFPDVKFEDLIPLDPRLEAVDEETRRQVERDALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E  LIP  FDY+ +  LSNELK KL  ++P NL QA++I+GMTP
Sbjct: 545 NYIARQQRDIDVLQKDEAHLIPDGFDYAPIDGLSNELKSKLIRVRPTNLAQAARIDGMTP 604

Query: 604 AALNLLLIYIKKNTVK 619
           +AL LLL ++K++  K
Sbjct: 605 SALTLLLSHLKRDARK 620


>gi|71083057|ref|YP_265776.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|81170565|sp|Q4FNR6|MNMG_PELUB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71062170|gb|AAZ21173.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 623

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/616 (53%), Positives = 432/616 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S++V+VIGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVRE+DA
Sbjct: 6   SFEVVVIGGGHAGCEAAAASARLGINTALFTHKIETIGEMSCNPAIGGLGKGHLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAV+GPRTQ+DR LYR  MQ ++L+  NL V    V
Sbjct: 66  LDGVMGDVADKSGIQFRLLNRSRGPAVQGPRTQSDRSLYRKYMQEKLLNYCNLSVFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F   KN IS         I C  ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IKFIFNKNTISGFETNSGKKILCGKLILTTGTFLNGLIHIGDERTPAGRFNEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K+DF  GRLKTGTP RLD +TI +D  E+QFADE    FSF+T K  N+QI C +T 
Sbjct: 186 QLEKYDFKIGRLKTGTPPRLDARTIKYDNLEEQFADEDPYFFSFLTKKNLNKQISCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+K SA+YSG I+  GPRYCPSIEDKIV+F +++ HQI+LEPEGLN   
Sbjct: 246 TNEKVHKIIQKNLKRSAMYSGSIQGVGPRYCPSIEDKIVKFADKDRHQIYLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q +    I GLE V IIRPGYAIEYDYI+P+ELF TLETKKI  L+
Sbjct: 306 IYPNGISTSLPEDVQQEICNNISGLENVKIIRPGYAIEYDYIDPRELFLTLETKKIQNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    K +     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSFKKQEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G+++G I + R+  F    ++   +  ++   +++
Sbjct: 426 RMFTSRAEYRLSLRADNADQRLTNKGIEIGLISKEREDIFKDKEKKLGIISKIMGESLIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + S +I   +DG  R + E L+    +++ +  I P+   F   + E+++I + Y  
Sbjct: 486 PTKIKSFNIKIAKDGILRKSNEILTQKGVNMKKIREIWPEIPYFDKKIDEQIEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP++ +Y  L  LSNE+K K + +KP  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLVIPENVNYDDLSGLSNEVKAKFNQIKPKTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVKL 620
           A+ +LL ++K+ ++KL
Sbjct: 606 AVYILLSHVKRKSIKL 621


>gi|84514917|ref|ZP_01002280.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
 gi|84511076|gb|EAQ07530.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
          Length = 623

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/618 (52%), Positives = 426/618 (68%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIVIGGGHAG EAA  AA++GA T L+T    +IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHYDYDVIVIGGGHAGSEAAHAAARMGARTVLVTLTRRSIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG MG+VAD AGIQFR+LN KKGPAV+GPR Q DR +YR  MQ  + +Q NL ++
Sbjct: 61  EIDALDGAMGQVADRAGIQFRLLNRKKGPAVQGPRAQTDRAIYRDTMQAVLAAQPNLTIL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE      + + ++ I ++D  M+    V+LTTGTFLRGVIHIG++  P GRMGD PS 
Sbjct: 121 EGEATDLVMDGDRVAGIYLRDGQMVTSKNVILTTGTFLRGVIHIGEVSRPGGRMGDDPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +      F    GRLKTGTP RLDG+TI WD  E Q +D+  + FSF++  +  +Q+ C
Sbjct: 181 HMAERLDGFGLPMGRLKTGTPPRLDGRTIRWDILESQPSDDDPVLFSFLSKSVFAQQVNC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II  N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 241 GITHTNEQTHDIIRANLGRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +YPNGIST+LPE++Q  ++R+I GLE   I++PGYAIEYDY++P+ L PTLE + +
Sbjct: 301 NDHTIYPNGISTSLPEDVQLDYVRSIHGLENATILQPGYAIEYDYVDPRALRPTLELRDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLV+G+N+A  +   + + FSR +SYIGVMIDDL ++GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGLVSGLNAAAAALDKEPVLFSRRESYIGVMIDDLITRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT  G  +GCI E R   F+  + +    +S L  
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADQRLTARGRAIGCISELRWSVFSAKMDKITDAKSRLGK 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + L+++++++       DG  +TA E L+  DF    L  I P+    +  + E+++ ++
Sbjct: 481 IYLSARDITAAGAQLNPDGPRKTALEALALADFGFAQLMQISPETSDIAPEIQEQVKKDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +   ++ +E +LIP   DY  +  LS EL  KL   +P ++ QA +IEG
Sbjct: 541 LYAHYILRQERDVSALERDEAQLIPDGLDYLGVRGLSTELVTKLQKTRPVSIAQAGRIEG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAAL LL+  IK++ +
Sbjct: 601 MTPAALMLLIGAIKRHAL 618


>gi|197106987|ref|YP_002132364.1| glucose inhibited division protein A [Phenylobacterium zucineum
           HLK1]
 gi|196480407|gb|ACG79935.1| glucose inhibited division protein A [Phenylobacterium zucineum
           HLK1]
          Length = 620

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/611 (54%), Positives = 430/611 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAAA AA+ GA T L+THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 7   TWDVIVIGGGHAGCEAAAAAARFGARTLLLTHKVETIGEMSCNPAIGGLGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+L+  NL V    V
Sbjct: 67  LDGLMGRLADVSGIQFRMLNRSKGAAVRGPRSQIDRRLYREAMQAELLATPNLTVRAEAV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   ++ +V           VVLTTGTFL+GVIH G+ +IPAGR+GD+P+  L +
Sbjct: 127 EDLVVQDGRVTGVVGASGETYPAGRVVLTTGTFLKGVIHQGETRIPAGRIGDAPAIGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLDGKTI WD+ E Q AD   IPFSF+T+ IT  QI CG+T 
Sbjct: 187 RLYALGLSMGRLKTGTPARLDGKTIAWDRLEMQEADAEPIPFSFLTEAITVPQIRCGVTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII E ++ SA+Y G +   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+ D 
Sbjct: 247 TTEETHRIIAERLEESAVYGGRVSGRGPRYCPSIEDKVVRFRDKTSHQIFLEPEGLDDDT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST++  E Q  F+RTIPGLE+V + R GYAIEYDY++P+EL+PTLE K++ GL+
Sbjct: 307 VYPNGISTSVSTETQDLFLRTIPGLEQVVVKRHGYAIEYDYVDPRELYPTLEAKRLPGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+AR ++  +   F+R ++YIGV+IDDL ++GV EPY
Sbjct: 367 LAGQINGTTGYEEAGAQGLVAGLNAARAASGAEPAQFARDEAYIGVLIDDLVTRGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R++LR DNAD RLT  G++LG +G  R   F    +     R++   L LT
Sbjct: 427 RMFTSRAEFRLTLRADNADQRLTGKGVELGVVGSERAGVFHVKQRALAEARAMANGLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +  K DG+ R   + L+YP     +L  I P    +S  V E+++I++SYA 
Sbjct: 487 PAEAQKAGLPVKADGQRRNLLQLLAYPTIGFDDLARIWPQVGDWSPAVREQVEIDASYAG 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +A+  + +E   +P D DY ++  LSNE++EKL+ ++P  L QA++IEG+TP 
Sbjct: 547 YLDRQAADAEAFRRDEDLRLPADLDYGAIGGLSNEVREKLAAVRPLTLGQAARIEGVTPG 606

Query: 605 ALNLLLIYIKK 615
           AL  LL ++++
Sbjct: 607 ALTALLAHVRR 617


>gi|149204376|ref|ZP_01881343.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
 gi|149142261|gb|EDM30308.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
          Length = 623

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/612 (54%), Positives = 433/612 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  AA++G  TAL+T   + IG MSCNPAIGGLGKGHLVREID
Sbjct: 5   KHFDVIVIGGGHAGAEAAHAAARMGVRTALVTLNRAGIGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M RE+ S   L++++GE
Sbjct: 65  ALDGVMGRVADRAGIQFRLLNRRKGPAVQGPRAQADRKIYREEMLRELESCPTLEIVEGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A F  +   ++ + + D   I  S VVLTTGTFLRGVIHIG    P GRMGD P+  L 
Sbjct: 125 AADFVMQGERVAGVRLADGGEISASAVVLTTGTFLRGVIHIGDESYPGGRMGDRPAVMLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RLDGKTI W + E+Q  D   + FSF++ + T RQ+ CGIT
Sbjct: 185 ERMDGFGLPMGRLKTGTPPRLDGKTIDWSRLEEQPGDNDPVLFSFLSKRPTARQVCCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPE L+  
Sbjct: 245 HTNAQTHDIIRENLDRSAMYGGHIDGIGPRYCPSIEDKIVRFSDKTSHQVFLEPESLSDH 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LP  +Q  ++R+I GLE V I++PGYAIEYDY++P+ L   L  K + GL
Sbjct: 305 VIYPNGISTSLPAVVQEAYVRSIVGLEHVEILQPGYAIEYDYVDPRALDSRLAVKAVPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGLVAG+N+A ++   + + FSRTDSYIGVMIDDLT++GV EP
Sbjct: 365 FLAGQINGTTGYEEAAAQGLVAGLNAALEAKGREPVQFSRTDSYIGVMIDDLTTRGVSEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+G+ LGC+G+ R+  F   ++     R  L++   
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTPLGLDLGCVGDDRRAVFGDKMERLVQGRQRLEATTF 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T + LS +     QDG  R+A++ LS+PD    +L  +     +      ++L  ++ YA
Sbjct: 485 TPRKLSESGFKVNQDGARRSAFQILSFPDVEFSDLLRLDQGYSEIDPECQQQLARDALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +   +K +E  +IP++F Y  +  LSNELK KL+ ++P NL QA++IEGMTP
Sbjct: 545 SYIERQARDVAMMKRDEAHVIPENFAYDRIEGLSNELKGKLAQVQPENLAQAARIEGMTP 604

Query: 604 AALNLLLIYIKK 615
           AAL+L+L  +++
Sbjct: 605 AALSLILAKLRQ 616


>gi|83942028|ref|ZP_00954490.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
 gi|83847848|gb|EAP85723.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
          Length = 620

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/616 (53%), Positives = 430/616 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA+TALIT     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGANTALITMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  M  E   Q+NL +++GE
Sbjct: 62  ALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRAIYRKEMLAETERQKNLTIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S  V+ D   I  + VVLTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 122 VTDFILDNGKVSGAVLADGEQIAAAEVVLTTGTFLRGVIHIGDVSRSGGRMGDKASVDLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F+   GRLKTGTP RLDG+TI W+K E Q  D+  + FSF+++  +  QI CGIT
Sbjct: 182 KRIDSFNLPLGRLKTGTPPRLDGRTIDWEKLESQPGDDEPVLFSFLSEATSAPQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG +  
Sbjct: 242 HTNEETHQIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGADDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE++Q  ++R++ GLE V II+PGYAIEYDY++P+ L   L  + + GL
Sbjct: 302 TIYPNGISTSLPEDVQLAYVRSMVGLENVEIIQPGYAIEYDYVDPRALDLALSVRTVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR DSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVTFSRADSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ + LGC+ + R   F   + + +   + L     
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIALGCVSQERVAHFNAKMAKIDAAMAELTKTPY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            SK + +  I   QDG  RT ++ L++PD + + +  I P        +  +++ ++ YA
Sbjct: 482 ASKAIEAAGIKVSQDGTKRTGFQLLAFPDVTFEQIVLINPALETVEPEIRRQVERDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E  +IP +FDY ++  LSNEL  KLS+ +P NL QA++I+GMTP
Sbjct: 542 NYIARQQRDIDLLQKDEAHVIPANFDYEAIDGLSNELTSKLSLTRPTNLAQAARIDGMTP 601

Query: 604 AALNLLLIYIKKNTVK 619
           +AL LLL ++K+ + K
Sbjct: 602 SALTLLLSHLKRGSQK 617


>gi|99082705|ref|YP_614859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. TM1040]
 gi|123077394|sp|Q1GCL9|MNMG_SILST RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|99038985|gb|ABF65597.1| Glucose inhibited division protein A [Ruegeria sp. TM1040]
          Length = 627

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/611 (54%), Positives = 423/611 (69%), Gaps = 2/611 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG EAA  +A++G  TAL+T +   IG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   YDVVVVGGGHAGTEAAHASARMGVRTALVTLRRDGIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  M R   +Q NLD+I+GEV 
Sbjct: 69  DGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQADRSIYRKEMLRATEAQSNLDIIEGEVV 128

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            F  E    +  I++ D S IR   VVLT+GTFL GVIHIG      GRMGD PS  L  
Sbjct: 129 DFLMESPTRVRGIILDDQSEIRAECVVLTSGTFLNGVIHIGNKSSSGGRMGDRPSIKLAE 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
               F+   GRLKTGTP RLDG+TI WD  + Q  DE    FSF++   +  QI CGIT 
Sbjct: 189 RLKSFELPLGRLKTGTPPRLDGRTINWDILDSQPGDEDPTLFSFLSTNTSAPQIACGITH 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II +N++ SA+Y G I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG+N   
Sbjct: 249 TNEKTHEIIRDNLELSAMYGGHIEGVGPRYCPSIEDKIVRFADKTSHQIFLEPEGVNDHT 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q  ++R+I GLE   +++PGYAIEYDY++P+ L  TLE + + GL+
Sbjct: 309 VYPNGISTSLPEDVQVDYVRSIVGLENAEVLQPGYAIEYDYVDPRALRSTLELRDVEGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A    K   I F R++SYIGVMIDDL + GV EPY
Sbjct: 369 LAGQINGTTGYEEAAAQGLVAGLNAASHRLKQQEIVFGRSNSYIGVMIDDLITNGVTEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTPIG  LGCI E R+  F + +      +S L S++LT
Sbjct: 429 RMFTSRAEFRLSLRADNADQRLTPIGYDLGCISEVRRSEFDRKMDAITRTKSALTSVLLT 488

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K L    I   QDG  R   + L++P     ++  + P+     + + E++  +S YA 
Sbjct: 489 PKQLLEAGIQVNQDGNKRNGLDVLAFPKVEFDDILPLFPELADTETSIREQVTRDSLYAN 548

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E   +K +E+  IP+DF Y  +  LS EL++KL   +P +L QA++I+GMTPA
Sbjct: 549 YIARQEKEVASLKRDEQYRIPRDFSY-EIDGLSMELRQKLERSRPESLAQAARIDGMTPA 607

Query: 605 ALNLLLIYIKK 615
           AL L+L  +KK
Sbjct: 608 ALALMLGSLKK 618


>gi|81170573|sp|Q6ND15|MNMG_RHOPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 622

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/615 (53%), Positives = 438/615 (71%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA AA++GA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SFDVIVIGGGHAGCEAAAAAARIGAATALVTHRFATVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I    NL VI+GE 
Sbjct: 64  LDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQTAIQGFPNLSVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S I + D      + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L +
Sbjct: 124 DALLWQDGRVSGIRLGDGREFAAAAVVITTGTFLRGLIHLGERSWPAGRIDEAPAMGLSS 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF    F  GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECGITR
Sbjct: 184 SFEALGFKLGRLKTGTPPRLDGRTIDWSAVEMQPGDDPAEPFSVLTPAITTPQIECGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+   
Sbjct: 244 TTTATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   ++TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 304 VYPNGISTSLPEEVQRAILKTIPGLERTEMLRPGYAIEYDHVDPRELEPTLQTKRLRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+   +   D + F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAGLSAGGGDLVVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +   +  ++L +SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDKGLALGCVGVERSAFHHDKMSALSDAKALAQSLSIT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A++ LSYP+     + +I P+  K    +   ++I++ Y  
Sbjct: 484 PNEAAKHGLALNRDGQRRSAFDLLSYPEIEWAQVRAIWPELGKVDPAIAVHVEIDAKYHV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L   D DY+++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLERQTADVEAFRRDES-LGLTDVDYAAVPGLSNEARTRLERHRPHTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++   K
Sbjct: 603 ALGILAAYLRREQRK 617


>gi|126734409|ref|ZP_01750156.1| glucose-inhibited division protein A [Roseobacter sp. CCS2]
 gi|126717275|gb|EBA14139.1| glucose-inhibited division protein A [Roseobacter sp. CCS2]
          Length = 625

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/611 (54%), Positives = 432/611 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA++G  TAL+T    +IG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   YDVIVIGGGHAGAEAAHAAARMGVRTALVTLTKHSIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGRVAD AGIQFR+LN KKGPAV+GPR Q+DR++YR  MQ E+ + +NL +++GE  
Sbjct: 69  DGVMGRVADKAGIQFRLLNRKKGPAVQGPRAQSDRQIYRTEMQSELNALKNLVIVEGEAV 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   ++ + M D S +   +V+LT GTFLRGVIHIG +  P GRMGD PS  +   
Sbjct: 129 DLLMSGERVTGVQMHDGSALTAQSVILTMGTFLRGVIHIGDVSRPGGRMGDDPSVKMAER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              F    GRLKTGTP RLDG+TI WDK E Q +D+  + FSF++      QI+CGIT T
Sbjct: 189 LDSFSLPLGRLKTGTPPRLDGRTIAWDKLEAQPSDKDPVLFSFLSTGTYAPQIDCGITHT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF E+N HQIFLEPEG+    V
Sbjct: 249 NAQTHDIIRDNLGRSAMYGGQIDGVGPRYCPSIEDKIVRFAEKNSHQIFLEPEGVTDHTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  ++ +I GLE   I++PGYAIEYDY++P+ L  TLE + + GLFL
Sbjct: 309 YPNGISTSLPEDVQKAYVNSIYGLENALILQPGYAIEYDYVDPRALQATLELRDVPGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+N+A +    D I FSR +SYIGVMIDDL ++GV EPYR
Sbjct: 369 AGQINGTTGYEEAAAQGLVAGLNAAAQVRGRDPITFSRRESYIGVMIDDLITRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLT  G  LGC+GE R   F++ +Q  N  +  L ++ L++
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTQRGRNLGCVGEGRWAYFSEKMQGINLAKEKLANISLSA 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           + ++ST +    DG  ++A E L+  DFS ++L  +  +A +  + + ++++ ++ YA Y
Sbjct: 489 REIASTGVKLNADGPRKSALEALALSDFSFRHLSKLDQNADEIPAHIQDQVKKDALYAHY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +EK +IP DFDY+ +  LSNE+  KL+  +P ++  A +IEGMTPAA
Sbjct: 549 IARQERDIAALERDEKHVIPADFDYAGVRGLSNEIAAKLAATRPVSIAHAGRIEGMTPAA 608

Query: 606 LNLLLIYIKKN 616
           L L++   KK 
Sbjct: 609 LMLIIAATKKQ 619


>gi|89067425|ref|ZP_01154938.1| glucose-inhibited division protein A [Oceanicola granulosus
           HTCC2516]
 gi|89046994|gb|EAR53048.1| glucose-inhibited division protein A [Oceanicola granulosus
           HTCC2516]
          Length = 622

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/616 (52%), Positives = 428/616 (69%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + SYDV+VIGGGHAG EAA  AA+LG S AL+T   + IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSSYDVVVIGGGHAGSEAAHAAARLGCSVALVTLSAAGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVADAAGIQFR+LN +KGPAV+GPR QADR+LYR AMQ  + +Q NL + 
Sbjct: 61  EIDALDGVMGRVADAAGIQFRLLNRRKGPAVQGPRAQADRKLYRHAMQDALAAQPNLRIF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE      +   +  + + D   +    V+LTTGTFLRGVIHIG +  P GR+G+SPS 
Sbjct: 121 EGEAVDLLVKAGKVDGVRLADGGEVASKAVILTTGTFLRGVIHIGDVARPGGRIGESPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +     +F    GRLKTGTP RLDG+TI WD  E Q  D+    FSF++ + T RQI C
Sbjct: 181 RMAERIDEFGLPLGRLKTGTPPRLDGRTIRWDVLEMQPGDDEPTMFSFLSSQPTARQISC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN  TH II +N+  SA+Y G I   GPRYCPSIEDK+VRF E+  HQ+FLEPEGL
Sbjct: 241 GITHTNERTHDIIRDNLSRSAMYGGHIGGTGPRYCPSIEDKVVRFSEKPSHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPE++Q  ++R+I GLE V I++PGYAIEYDY++P+ L PTLE K +
Sbjct: 301 DDPTVYPNGISTSLPEDVQDAYVRSITGLEDVKILQPGYAIEYDYVDPRALRPTLEVKDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQINGTTGYEEAAAQGLVAG+++   +   + + FSRT SYIGVM+DDL ++GV
Sbjct: 361 AGLYLAGQINGTTGYEEAAAQGLVAGLSAGAAALGREPLTFSRTTSYIGVMVDDLITRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT  G + GC+GE R   +++        R  L+ 
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADQRLTEQGRQAGCVGEERWSSYSRKRDALATGRRELER 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +++L+    +   DG  R+  E L+  D S ++L ++ P+    +  +  +L+ ++
Sbjct: 481 RTFKARDLAGRGANLNSDGAARSGTEALALTDISFEDLIALDPELATVAPDIQRQLKNDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +   ++ ++ +++P+  DY  +  LSNEL EKL+  +P  +  AS+IEG
Sbjct: 541 LYANYIERQAQDIAALRRDDAQVLPEKLDYREIQGLSNELAEKLNHSRPATIAHASRIEG 600

Query: 601 MTPAALNLLLIYIKKN 616
           MTPAAL +LL  IK++
Sbjct: 601 MTPAALLILLAKIKRD 616


>gi|39933371|ref|NP_945647.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodopseudomonas palustris CGA009]
 gi|39652996|emb|CAE25738.1| putative glucose inhibited division protein A (GidA)
           [Rhodopseudomonas palustris CGA009]
          Length = 646

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/615 (53%), Positives = 438/615 (71%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA AA++GA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 28  SFDVIVIGGGHAGCEAAAAAARIGAATALVTHRFATVGAMSCNPAIGGLGKGHLVREVDA 87

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I    NL VI+GE 
Sbjct: 88  LDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQTAIQGFPNLSVIEGEA 147

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S I + D      + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L +
Sbjct: 148 DALLWQDGRVSGIRLGDGREFAAAAVVITTGTFLRGLIHLGERSWPAGRIDEAPAMGLSS 207

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF    F  GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECGITR
Sbjct: 208 SFEALGFKLGRLKTGTPPRLDGRTIDWSAVEMQPGDDPAEPFSVLTPAITTPQIECGITR 267

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+   
Sbjct: 268 TTTATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPT 327

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   ++TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 328 VYPNGISTSLPEEVQRAILKTIPGLERTEMLRPGYAIEYDHVDPRELEPTLQTKRLRGLF 387

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+   +   D + F R D Y+GVMIDDL ++G+ EPY
Sbjct: 388 LAGQINGTTGYEEAAAQGLVAGLNAGLSAGGGDLVVFDRADGYLGVMIDDLVTRGITEPY 447

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +   +  ++L +SL +T
Sbjct: 448 RMFTSRAEYRLTLRADNADQRLTDKGLALGCVGVERSAFHHDKMSALSDAKALAQSLSIT 507

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A++ LSYP+     + +I P+  K    +   ++I++ Y  
Sbjct: 508 PNEAAKHGLALNRDGQRRSAFDLLSYPEIEWAQVRAIWPELGKVDPAIAVHVEIDAKYHV 567

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L   D DY+++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 568 YLERQTADVEAFRRDES-LGLTDVDYAAVPGLSNEARTRLERHRPHTVGQAGRLDGITPA 626

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++   K
Sbjct: 627 ALGILAAYLRREQRK 641


>gi|300024784|ref|YP_003757395.1| glucose inhibited division protein A [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526605|gb|ADJ25074.1| glucose inhibited division protein A [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 623

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/620 (54%), Positives = 432/620 (69%), Gaps = 1/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +R+YDVIV+GGGHAG EAAA AA++GA TAL+TH  +T+G MSCNPAIGGLGKGHLVR
Sbjct: 1   MTSRTYDVIVVGGGHAGTEAAAAAARMGARTALVTHSFATVGEMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVAD AGIQFR+LN  KGPAV GPRTQADR+LYR AMQ EI +   LDV+
Sbjct: 61  EIDALDGLMGRVADVAGIQFRLLNRSKGPAVHGPRTQADRKLYRQAMQAEIAAIPGLDVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V     E   ++ +V  D   +    VVLTTGTFL G+IH+G+ KIPAGR G++P+ 
Sbjct: 121 EGGVEDLIVEDGRVAGVVTGDGRALSAGAVVLTTGTFLNGLIHMGEQKIPAGRAGEAPAL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +         GRLKTGTPARLDGK+I W   E Q AD+  +PFSF+T+++T  QI C
Sbjct: 181 KLSDRLYALGLKLGRLKTGTPARLDGKSIDWSGLEMQKADDEPVPFSFLTERVTTPQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  ETH II  N+  S ++SG I+S GPRYCPSIEDK+VRF +R+ HQIFLEPEGL
Sbjct: 241 GITYTTPETHDIIRANLARSPMFSGQIESIGPRYCPSIEDKVVRFADRSSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D +YPNG+ST+LP E+Q  F+RT+PGL  V I RPGYAIEYDY++P+EL   LE K++
Sbjct: 301 DDDTIYPNGVSTSLPVEVQDAFLRTMPGLANVVIKRPGYAIEYDYVDPRELTSGLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQG-LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             LFLAGQINGTTGYEEA AQG L     +       D    SRTD Y+GVM+DDL ++G
Sbjct: 361 PRLFLAGQINGTTGYEEAGAQGLLAGINAALAAGGAGDPFVVSRTDGYVGVMVDDLVTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+ LR DNAD RLT  G+ LGC+G  RQ  F    +  +   SLL 
Sbjct: 421 VSEPYRMFTSRAEFRLKLRADNADQRLTAAGIVLGCVGRARQAHFEAKTKALSEGLSLLN 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            L LT    +   ++  +DG+ RTA+E LS+PD S  +L  I P+    +  +  +L ++
Sbjct: 481 QLSLTPTEAARHGLTVNRDGRRRTAFELLSFPDISFDHLMPIWPELGGLAPQIAAQLGVD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YAAY  RQ  +  ++K +E   IP DFDY ++P+LS E+++KL   +P  + QA +IE
Sbjct: 541 ARYAAYLRRQDEDVAQLKRDEAVSIPVDFDYGAIPSLSAEVRQKLVQHRPGTIAQAGRIE 600

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+TPAAL  LL  +K    +
Sbjct: 601 GVTPAALLTLLARVKAGRAR 620


>gi|254455349|ref|ZP_05068778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082351|gb|EDZ59777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 623

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/615 (52%), Positives = 427/615 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV++IGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   SFDVVIIGGGHAGCEAAAASARLGVNTALFTHKKETIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAVRGPRTQ+DR LYR  MQ ++ +  NL++    V
Sbjct: 66  LDGVMGEVADKSGIQFRLLNRSRGPAVRGPRTQSDRSLYRKYMQEKLANYCNLNIFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  +KN I+  + +    + CS ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IKFIFDKNTITGFMTKKGKKVLCSKLILTTGTFLNGLIHIGDERTPAGRYDEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K++F  GRLKTGTP RLD +TI ++  E+QFAD+    FSF+T K  N+Q+ C +T 
Sbjct: 186 QLEKYNFKIGRLKTGTPPRLDSRTINYENLEEQFADDNPYFFSFLTKKNINKQVSCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+  SA+YSG I+  GPRYCPSIEDKIV+F ++  HQIFLEPEGLN   
Sbjct: 246 TNDKVHKIIEKNLSKSAMYSGSIQGVGPRYCPSIEDKIVKFADKGRHQIFLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q +    I GLE V+IIRPGYAIEYDYI+P+ELF TLE KKIS L+
Sbjct: 306 IYPNGISTSLPADVQQEICNNINGLENVSIIRPGYAIEYDYIDPRELFLTLEAKKISNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    KL+     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSHKKLEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  GM++G IG+ R+  +     + N +   +    ++
Sbjct: 426 RMFTSRAEYRLSLRSDNADQRLTAKGMEIGLIGDVRKTLYLDKFDKINQINVKMGQSTIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   I   +DG  R++ E L+     +  +  I PD   FS  + E+++I + Y  
Sbjct: 486 PNKADQFGIKIAKDGILRSSNEILTQKGVDMNKIREIWPDIPYFSKEIDEQVEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP   +Y  L  LSNE+K K   ++P  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLIIPDKINYDGLSGLSNEVKAKFKEIRPKTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVK 619
           A+ +LL ++K+ ++K
Sbjct: 606 AVYILLSHVKRKSIK 620


>gi|192288727|ref|YP_001989332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris TIE-1]
 gi|254811517|sp|B3Q8A7|MNMG_RHOPT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|192282476|gb|ACE98856.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           TIE-1]
          Length = 622

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/615 (54%), Positives = 438/615 (71%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA AA++GA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SFDVIVIGGGHAGCEAAAAAARIGAATALVTHRFATVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I    NL VI+GE 
Sbjct: 64  LDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQIAIQGFPNLSVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S I + D      + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L +
Sbjct: 124 DALLWQDGRVSGIRLGDGREFAAAAVVITTGTFLRGLIHLGERSWPAGRIDEAPAMGLSS 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF    F  GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECGITR
Sbjct: 184 SFEALGFKLGRLKTGTPPRLDGRTIDWSAVEMQPGDDPAEPFSVLTPAITTPQIECGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+   
Sbjct: 244 TTPATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   ++TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 304 VYPNGISTSLPEEVQRAILKTIPGLERTEMLRPGYAIEYDHVDPRELEPTLQTKRLRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D   F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAALSAGGGDRAVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +   +  ++L +SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDKGLALGCVGVERSAFHHDKMAALSDAKALAQSLSIT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A++ LSYP+     + +I P+  K    +   ++I++ Y  
Sbjct: 484 PNEAAKHGLALNRDGQRRSAFDLLSYPEIEWAQVRAIWPELGKVDPAIAVHVEIDAKYHV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L   D DY+++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLERQTADVEAFRRDES-LGLTDVDYAAVPGLSNEARTRLERHRPHTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++   K
Sbjct: 603 ALGILAAYLRREQRK 617


>gi|312115381|ref|YP_004012977.1| glucose inhibited division protein A [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220510|gb|ADP71878.1| glucose inhibited division protein A [Rhodomicrobium vannielii ATCC
           17100]
          Length = 621

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/617 (54%), Positives = 432/617 (70%), Gaps = 1/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R++DVIV+GGGHAGCEAAA AA++GA+TAL+THK +T+G MSCNPAIGGLGKGHLVR
Sbjct: 1   MAERAFDVIVVGGGHAGCEAAAAAARMGAATALVTHKAATLGEMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDGLMGRV D AGIQFR+LN  KGPAV+GPR QADR+LYR  MQ  + +Q+ L V+
Sbjct: 61  EVDALDGLMGRVIDKAGIQFRMLNRSKGPAVQGPRAQADRKLYRREMQAALAAQDGLTVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V     E   ++ +V      +R   V +TTGTFL+GVIH+G+ + PAGR+G++PS 
Sbjct: 121 EDAVEDLLVESGAVAGVVTASGRELRSGAVAITTGTFLKGVIHLGETRTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +         GRLKTGTPARLDG+TI + + + Q  D   +PFSFMTD+I   QI C
Sbjct: 181 GLSDRLYALGLRMGRLKTGTPARLDGRTIDFTRLDSQPGDAPPVPFSFMTDRIETPQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T  ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPEGL
Sbjct: 241 AITATTAETHAIIRANIHRAPMYSGQIEGVGPRYCPSIEDKVVRFADRESHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPE++Q  FI TIPGLE+  I+RPGYAIEYDY++P+EL  TLE K++
Sbjct: 301 DDPTVYPNGISTSLPEDVQRAFIATIPGLERATIVRPGYAIEYDYVDPRELTATLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             LFLAGQINGTTGYEEAA QGLVAGIN+A   S  +     SRTD YIGVMIDDL ++G
Sbjct: 361 PRLFLAGQINGTTGYEEAAGQGLVAGINAALVASGGVADFVVSRTDGYIGVMIDDLVTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLTP+G + GC+G  R+  +A         R LL+
Sbjct: 421 VSEPYRMFTSRAEYRLRLRADNADERLTPLGARAGCVGSAREAAYAAKADALGSARRLLE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +L LT    +   I   +DG+ R+A++ L+ P  SI  L  + P+        +ERL+++
Sbjct: 481 TLTLTPDEAARHGIVLNRDGRRRSAFDLLALPGQSIAALARVWPELGDMPRGTVERLEVD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ       + +E   IP   D++++  LSNE+++KL   +P  L QA++I+
Sbjct: 541 ARYAVYLDRQEASIVAFRKDEAVAIPPALDFAAIQGLSNEVRQKLDRHRPATLAQAARID 600

Query: 600 GMTPAALNLLLIYIKKN 616
           GMTPAAL +LL +I+K 
Sbjct: 601 GMTPAALMVLLAHIRKT 617


>gi|85706894|ref|ZP_01037984.1| glucose-inhibited division protein A [Roseovarius sp. 217]
 gi|85668505|gb|EAQ23376.1| glucose-inhibited division protein A [Roseovarius sp. 217]
          Length = 620

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/612 (54%), Positives = 434/612 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG +A   AA++GA TAL+T   S IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGADAGHAAARMGARTALVTLSRSGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++Y   M  EI S   L +I GE
Sbjct: 62  ALDGVMGRVADRAGIQFRLLNRRKGPAVQGPRAQADRKIYCEEMLGEIESCSGLSIIVGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A F  +   ++ + + D S I  +TV+LTTGTFLRGVIHIG++  P GRMGD PS  L 
Sbjct: 122 AADFLMQGERVAGVRLIDGSEISGATVILTTGTFLRGVIHIGEVSRPGGRMGDRPSIPLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RL+GKTI W + E+Q  D+    FSFM+   + RQI CGIT
Sbjct: 182 ERLDGFGLAMGRLKTGTPPRLNGKTIDWARLEEQPGDDDPTLFSFMSKAPSARQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPE L+ D
Sbjct: 242 HTNTQTHDIIRENLGRSAMYGGHIDGIGPRYCPSIEDKIVRFSDKCSHQIFLEPESLSDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LP E+Q  ++R+I GLE   I++PGYAIEYDY++P+ L   L  K + GL
Sbjct: 302 VIYPNGISTSLPVEVQEAYVRSIHGLEAAEILQPGYAIEYDYVDPRALDGRLAVKSVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A ++       FSRTDSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALEALGRAPAQFSRTDSYIGVMIDDLTTRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD R+TP G++LGC+   R+  F K ++  +  R  L++   
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRMTPFGLELGCVSAPRKVAFEKKMERLSAARLRLETASY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T ++LS   ++   DG  R+A++ LSYPD +  +L  + P+  +      +++  ++ YA
Sbjct: 482 TPRHLSDLGLNVNHDGARRSAFQILSYPDVTFSDLVQLDPEFAEIDLETQKQIAKDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +  ++K +E  +IP+ F Y S+  LSNELK KL+ ++P NL QA +IEGMTP
Sbjct: 542 TYIERQNRDVAKLKRDEAYVIPRSFGYGSIEGLSNELKSKLADVRPENLAQAGRIEGMTP 601

Query: 604 AALNLLLIYIKK 615
           AAL+L+L  +++
Sbjct: 602 AALSLILAKLRQ 613


>gi|315497188|ref|YP_004085992.1| glucose inhibited division protein a [Asticcacaulis excentricus CB
           48]
 gi|315415200|gb|ADU11841.1| glucose inhibited division protein A [Asticcacaulis excentricus CB
           48]
          Length = 620

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/609 (54%), Positives = 416/609 (68%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L+THK  T+G MSCNPAIGGLGKGHLVREIDAL
Sbjct: 5   WDVIVVGGGHAGAEAATAAARMGAKTLLLTHKIETLGEMSCNPAIGGLGKGHLVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR+AD  GIQF++LN  KGPAVRGPR Q DR+LYR AMQ E+ S ENL +I   V 
Sbjct: 65  DGVMGRMADIGGIQFKMLNRSKGPAVRGPRAQIDRKLYREAMQAELQSTENLTIIAAAVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V       R   VVLTTGTFLRG+IHIG+ ++ AGR GD P+N L   
Sbjct: 125 DLILEGDTVVGTVDAQGVEYRSKAVVLTTGTFLRGIIHIGEKRMAAGRFGDEPANGLGQR 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 D GRLKTGTPARLDGKTI WD  EKQ  D    PFS +   I   QI CGIT T
Sbjct: 185 LYDLKLDMGRLKTGTPARLDGKTINWDVLEKQEGDAIPTPFSTLNAAINRPQITCGITYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +THRII E I  SA+Y G +   GPRYCPSIEDK+VRF +++ HQ+FLEPEG + D V
Sbjct: 245 NADTHRIIQERITESAVYGGHLSGRGPRYCPSIEDKVVRFSDKDSHQVFLEPEGYDDDTV 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST++ E  Q  F+RTI GLE V I R  YAIEYDY++P+EL+PTLE K++ GLFL
Sbjct: 305 YPNGISTSVSEATQEAFLRTIRGLENVVIKRYAYAIEYDYVDPRELYPTLELKRLPGLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+A ++  L  +   R ++YIGVMIDDL +KGV EPYR
Sbjct: 365 AGQINGTTGYEEAGAQGLMAGLNAAARAGGLSPLVLGRDEAYIGVMIDDLVTKGVTEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR DNAD RL+ I +K G +GERR+  + +  Q     R   + L LT 
Sbjct: 425 MFTSRAEFRLKLRADNADQRLSDIALKTGLMGERRKTHWLEKKQALAEARQRAEDLKLTP 484

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              ++  I    DG+ R   + LSY   S   L ++ P+ + +S  V E+++I++ Y+ Y
Sbjct: 485 NEANALGIRVNADGQKRNLLQLLSYDTCSRDKLETVWPELKDWSDSVFEQVEIDALYSGY 544

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
            GRQ  E    + +E   +P+D DY+ +  LSNE +EKL  ++P  L QA +IEGMTP A
Sbjct: 545 LGRQAAEIDAFRKDENLALPEDLDYARVGGLSNEAREKLGRVRPLTLGQARRIEGMTPGA 604

Query: 606 LNLLLIYIK 614
           L  LL +++
Sbjct: 605 LTALLFHVR 613


>gi|259417090|ref|ZP_05741009.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter sp. TrichCH4B]
 gi|259345996|gb|EEW57810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter sp. TrichCH4B]
          Length = 624

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/616 (53%), Positives = 434/616 (70%), Gaps = 2/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDV+V+GGGHAG EAA  +A++G  TAL+T +   IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSHYDVVVVGGGHAGTEAAHASARMGVRTALVTLRRDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  + +   +Q NL++I
Sbjct: 61  EIDAMDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQADRSIYRTEVLKATETQLNLNII 120

Query: 121 QGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           +GEV  F  E +N +  + + D S I  S VVLT+GTFL GVIHIG      GRMGD PS
Sbjct: 121 EGEVIDFLMEGENTVRGVRLADESEISASAVVLTSGTFLNGVIHIGNQSKSGGRMGDRPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      FD   GRLKTGTP RLDG+TI WD  + Q  D+    FSFM+  ++  QI 
Sbjct: 181 IKLAERLKSFDLPLGRLKTGTPPRLDGRTINWDVLDSQPGDDEPTLFSFMSKSVSAPQIA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN  TH II +N++ SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 241 CGITHTNERTHEIIRDNLELSAMYGGHIEGVGPRYCPSIEDKIVRFSDKSSHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++   VYPNGIST+LPEE+Q  ++++I GLE+ +I++PGYAIEYDY++P+ L  TLE + 
Sbjct: 301 VSDHTVYPNGISTSLPEEVQITYVQSIYGLEQASILQPGYAIEYDYVDPRALRSTLELRD 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGL+LAGQINGTTGYEEA AQGLVAG+N+A K      I F R+ SYIGVMIDDL + G
Sbjct: 361 ISGLYLAGQINGTTGYEEAGAQGLVAGLNAASKCRGKGDIIFGRSTSYIGVMIDDLITNG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+  +LGCI   R   F K +     ++S L+
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTPLAKELGCISAERTTAFDKKMAGIEGVKSALE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +++LT K L  + I   QDG  R+  + L++P+   +++  + P+ +     + E++  +
Sbjct: 481 AVLLTPKQLVQSGIQVNQDGNKRSGIDVLAFPNVEFEHILPLFPELQATEKEIREQIMRD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           S YA Y  RQ  E   +K +E+  IP +FDY S+  LS EL++KL+  +P +L QA++I+
Sbjct: 541 SLYANYISRQEKEVAALKKDEEYSIPSNFDY-SIDGLSRELQQKLNKSRPESLAQAARID 599

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAAL L+L  +K+
Sbjct: 600 GITPAALALILGSLKR 615


>gi|84684648|ref|ZP_01012549.1| glucose-inhibited division protein A [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667627|gb|EAQ14096.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2654]
          Length = 625

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/615 (53%), Positives = 435/615 (70%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+++GGGHAG EAA  +A++GA TAL+T + S +G MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVVIVGGGHAGAEAAVASARIGARTALVTLRASDLGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR AD AGIQFR+LN  KGPAV+GPR QADR+LYR A+   +  QE+L V++GEVA
Sbjct: 69  DGIMGRAADVAGIQFRLLNRSKGPAVQGPRAQADRKLYRAAVSELVSEQEHLTVVEGEVA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + +S +++ D S I    VVLTTGTFLRGVIHIG ++   GRMGD PS  L   
Sbjct: 129 SLAMSGDKVSGLILSDGSEISARAVVLTTGTFLRGVIHIGDVRWEGGRMGDRPSVRLAEQ 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGTP RLDG+TI W K E Q  DE    FSF+  K T RQI CGIT T
Sbjct: 189 IESLGLPFGRLKTGTPPRLDGRTIDWGKLETQPGDENPEVFSFLNTKPTARQISCGITHT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N++ SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   V
Sbjct: 249 NERTHEIISRNLERSAMYGGHIDGVGPRYCPSIEDKVVRFSDKPSHQIFLEPEGLDDHTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  ++ +I GLE   I++PGYAIEYDY++P+ L  TLE K +SGL+L
Sbjct: 309 YPNGISTSLPEDVQQAYVASISGLENARILQPGYAIEYDYVDPRALRLTLELKNVSGLYL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG+VAG N+AR +   + + FSR+ SYIGVMIDDL ++GV EPYR
Sbjct: 369 AGQINGTTGYEEAAAQGIVAGFNAARAALDQEEVIFSRSSSYIGVMIDDLVTRGVTEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R++LR DNAD RLTP+ + LG +   R++RF++ I++ +  +SLLK      
Sbjct: 429 MFTSRAEFRLALRADNADQRLTPLAIDLGAVSAERKRRFSEKIEKLDAAKSLLKGRSFKP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-RLQI--ESSY 542
           + +++   S  +DG  RT ++ LS P  +  +L  +      F+++ ++ R Q+  ++ Y
Sbjct: 489 QEVNAAGGSVSEDGTRRTGFDLLSIPGITFASLVKMND---VFATVDLDTRSQVSKDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E + ++ +E ++IP DFDY+ L  L+ ELK+KLS ++P  L  A +IEGMT
Sbjct: 546 ARYIERQAREVEALRRDEHQVIPSDFDYAGLDGLTGELKQKLSKVQPETLAHAGRIEGMT 605

Query: 603 PAALNLLLIYIKKNT 617
           PAAL L+L  ++++ 
Sbjct: 606 PAALALILAKVRQSA 620


>gi|119382761|ref|YP_913817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paracoccus denitrificans PD1222]
 gi|166222715|sp|A1AXX7|MNMG_PARDP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119372528|gb|ABL68121.1| glucose inhibited division protein A [Paracoccus denitrificans
           PD1222]
          Length = 619

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/611 (52%), Positives = 427/611 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  AA++G  TAL+T     IG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQFDVIVIGGGHAGVEAAMAAARMGVKTALVTLHRDDIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MG++AD AGIQFR+LN +KGPAV+GPR QADR+LYR A  + +  Q+ L +I GE
Sbjct: 62  ALDGVMGKLADTAGIQFRLLNRRKGPAVQGPRAQADRKLYRSAAAKIVAGQDGLSLILGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E+  ++ + + D+S ++   ++LTTGTFL G+IHIG++   AGR G S S +L 
Sbjct: 122 AAELLHERGQVTGLRLADDSELQARQIILTTGTFLNGLIHIGEISRQAGRWGGSTSVTLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S    +   GRLKTGTP R+  ++I W+   +Q  DE  + FS++       Q+ C IT
Sbjct: 182 ASLRPLNLPLGRLKTGTPPRILRQSIDWESLHQQPGDEEPVMFSYLNTVPEAPQVSCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +THRII EN+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL++D
Sbjct: 242 HTNPDTHRIIRENLARSAMYGGRIDGVGPRYCPSIEDKVVRFADKESHQIFLEPEGLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LPE+IQ  ++R+I GLE+  I +PGYA+EYDY++P+ L  +LE K +SGL
Sbjct: 302 LVYPNGISTSLPEDIQLAYVRSIRGLERAQIAQPGYAVEYDYVDPRALAASLEVKNLSGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGLVAG+N+A K+   + + FSR+ SYIGVMIDDLT++GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLVAGLNAALKAQGREALHFSRSQSYIGVMIDDLTTRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP G+ +GC+G+ R+  F++ ++ Y   R   +S+  
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPFGIDIGCVGQERRAAFSEKMRRYTAARDRAESVSF 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   LS + I  + DG  R+ +  L+  +     + ++          +I +L  ++ Y 
Sbjct: 482 TPTELSRSGIEVRHDGARRSLFALLAQQEIPQDQVLALDDQLVLQDPAIIRQLATDALYH 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            YT RQ  +A+ ++ EE   IP +FDY +L  LSNELK KL+  +P  L  A+ IEGMTP
Sbjct: 542 QYTDRQGKDAELLRKEEAVAIPAEFDYDALSGLSNELKFKLNQHRPATLAAAANIEGMTP 601

Query: 604 AALNLLLIYIK 614
           AAL L+L  I+
Sbjct: 602 AALTLILAVIR 612


>gi|91206167|ref|YP_538522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii RML369-C]
 gi|157826531|ref|YP_001495595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii OSU 85-389]
 gi|122425159|sp|Q1RGT1|MNMG_RICBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166199727|sp|A8GUR1|MNMG_RICB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91069711|gb|ABE05433.1| Glucose-inhibited division protein A [Rickettsia bellii RML369-C]
 gi|157801835|gb|ABV78558.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii OSU 85-389]
          Length = 621

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/611 (52%), Positives = 428/611 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAAA +A+LG ST LIT K+  +G MSCNPAIGG+ KG LV+EID
Sbjct: 2   QKYDVIVIGGGHAGVEAAAASARLGVSTLLITPKSENLGEMSCNPAIGGIAKGTLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NL+++  +
Sbjct: 62  ALDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLEILYAK 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + I ++++ + S I C  ++LTTGTFL G+IHIG  KIPAGR+ + PS  L 
Sbjct: 122 VEDIEIKSSEIKAVILNNGSKIPCQKIILTTGTFLSGLIHIGSKKIPAGRVDEEPSYGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N+  +  F   RLKTGTP R+DG+TI + K E Q  D+   PFS +TD +   QI C +T
Sbjct: 182 NTLRRIGFKLSRLKTGTPPRIDGRTIDYSKVESQPGDKVPRPFSELTDNVNVPQINCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH +I  N+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEG++  
Sbjct: 242 KTTTETHNVIRANLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGVDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPEE+QHQ I+TIPGLE   I+RPGYAIEYDYI+P+E+  TLETKKI+GL
Sbjct: 302 TIYPNGISTSLPEEVQHQLIKTIPGLENAIILRPGYAIEYDYIDPREISSTLETKKITGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAA QG+VAGIN+A           +R +SYIGVMIDDLTS G LEP
Sbjct: 362 YFAGQINGTTGYEEAAGQGIVAGINAALAVKNQPPFILTRANSYIGVMIDDLTSFGTLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSR+EYR+S+R DNAD RLT +G+ +G I E+R++ F    +     +SLL +L L
Sbjct: 422 YRMFTSRSEYRLSIRADNADLRLTEMGISIGVISEKRKEIFTIKCKNIESTKSLLNTLCL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T+  L+   I   QDG  +T  +    P+F ++    I P  +   + +++ L IE+ YA
Sbjct: 482 TTSKLAKMGIQVAQDGTYKTVLDLFKIPNFDVEQAIKIFPVLKNVDNNILQLLYIEAKYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  ++ A +I G+TP
Sbjct: 542 SYLVRQYADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSYNKPITIVAARRIPGVTP 601

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 602 AAITAIIIYLK 612


>gi|302381484|ref|YP_003817307.1| glucose inhibited division protein A [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192112|gb|ADK99683.1| glucose inhibited division protein A [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 641

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/614 (51%), Positives = 415/614 (67%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA +A+ GA T L+T K  T+G MSCNPAIGGLGKGHLVREIDA
Sbjct: 26  SFDVIVIGGGHAGCEAAAASARTGARTLLLTQKLETVGEMSCNPAIGGLGKGHLVREIDA 85

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G  
Sbjct: 86  LDGLMGRLADVSGIQFRMLNRSKGAAVRGPRSQIDRRLYREAMQAELAGTPNLTLMAGTA 145

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  + +  +   +   +R   VVLTTGTFL GVIH G ++ PAGR G++PS  L  
Sbjct: 146 EALMLNGDRVVGVTTGEGLDLRAGAVVLTTGTFLNGVIHQGDVRTPAGRHGEAPSTGLAR 205

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLDG+TI WD+ E Q AD   +PFSF+TD+I+  QI CGIT+
Sbjct: 206 DLYGAGLKMGRLKTGTPARLDGRTIGWDRLEMQAADAEPVPFSFLTDRISVPQIACGITQ 265

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II  N+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+   
Sbjct: 266 TTEQTHAIIAANLGESAVYGGHLTGRGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDDPT 325

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST++  E Q  F+RT+PGLE V + R GYAIEYDY++P+EL   LE K+  GL+
Sbjct: 326 VYPNGISTSVSPETQMAFLRTMPGLEAVEVFRFGYAIEYDYVDPRELTSALEVKRRPGLY 385

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR +     I   R  +YIGVMIDDL ++GV EPY
Sbjct: 386 LAGQINGTTGYEEAGAQGLIAGLNAARAAAGSPEIVLGRDQAYIGVMIDDLVTRGVTEPY 445

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLTP+G+  G +   R+  F           +L++    T
Sbjct: 446 RMFTSRAEYRLTLRADNADQRLTPVGIGAGIVCGARRAAFEAKADTLAEATALVRDTRFT 505

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                +  I+   DG+ R+  + L+YP   +    +  P    +   + E+++I++ YA 
Sbjct: 506 PNEAQALGIAVNADGQRRSMRDLLAYPGVDLTQFETAWPIIGSWPVAIREQVEIDAGYAG 565

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  EA+ ++ EE   +P   DY+++  LSNE++EKLS+++P  L QA +IEG+TP 
Sbjct: 566 YLDRQTAEAEALRREEALTLPASLDYAAIGGLSNEVREKLSLVQPRTLGQAGRIEGVTPG 625

Query: 605 ALNLLLIYIKKNTV 618
           AL  LL ++K+ +V
Sbjct: 626 ALTALLSHVKRTSV 639


>gi|56694929|ref|YP_165274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria pomeroyi DSS-3]
 gi|81170578|sp|Q5LWF3|MNMG_SILPO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56676666|gb|AAV93332.1| glucose inhibited division protein A [Ruegeria pomeroyi DSS-3]
          Length = 622

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/603 (53%), Positives = 428/603 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D++VIG GHAG EAA  AA++G  TAL++     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSDFDIVVIGAGHAGAEAAHAAARMGMRTALVSLSERDIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR+LYRLAMQ E+ ++  L ++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYRLAMQEEMRNRPGLTIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEV  F  + + ++ +V+ D S I    V+LT+GTFLRG+IHIG +  P GRMGD PS 
Sbjct: 121 EGEVTDFRMQGDRVAGVVLADGSEIASQAVILTSGTFLRGIIHIGDVSRPGGRMGDRPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI W   E+Q  D+  + FSF++     RQI C
Sbjct: 181 PLAERLDGFALPMGRLKTGTPPRLDGRTIDWSILERQDGDDDPVLFSFLSKGAYARQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEGL
Sbjct: 241 GITHTNAQTHEIIRKNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VYPNGIST+LP ++Q  ++R+I GLE+V I++PGYAIEYDY++P+ L   L    +
Sbjct: 301 EDHTVYPNGISTSLPVDVQEDYVRSIRGLEQVEILQPGYAIEYDYVDPRALTSQLSLPNV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG+VAG+N+A      + + FSR +SYIGVMIDDLT++GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGMVAGLNAATAILGHEPVPFSRANSYIGVMIDDLTTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G++LGC+G+ R+  FA+  ++     +LL  
Sbjct: 421 AEPYRMFTSRAEFRLSLRADNADQRLTPLGLELGCVGDERRDVFARKAEKLATASALLDQ 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + K +++  I+  QDG  R  +  L++PD    +L  + P+     +    +++ ++
Sbjct: 481 SSFSPKEIATAGITISQDGNRRNGFAVLAFPDVRFDDLVPLIPELADTDAETRAQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  + + +K +E  +IP DF++S+L  LSNELK+KL+  +P N+ QA ++EG
Sbjct: 541 LYANYIARQERDVEAMKRDEALVIPIDFNFSALDGLSNELKQKLTSARPENIAQAGRVEG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|170750484|ref|YP_001756744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium radiotolerans JCM 2831]
 gi|205831534|sp|B1M186|MNMG_METRJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170657006|gb|ACB26061.1| glucose inhibited division protein A [Methylobacterium
           radiotolerans JCM 2831]
          Length = 633

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/573 (54%), Positives = 405/573 (70%), Gaps = 3/573 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH  +TIG+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADAAGIQFR+LN +KGPAVR
Sbjct: 36  LVTHDPATIGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAAGIQFRLLNRRKGPAVR 95

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQG--EVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           GPRTQADR+LY  AMQ  +     L V+ G  E   F+ E  +   +V+ D   + C  V
Sbjct: 96  GPRTQADRKLYAAAMQTAVAETAGLTVVAGACEDLAFDAEGRL-CGLVLADGRTLACGAV 154

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           VLTTGTFLRG+IHIG+ +IPAGR+G++P+  L  +  +     GRLKTGTP RLDG+TI 
Sbjct: 155 VLTTGTFLRGLIHIGERQIPAGRVGEAPAVGLAQTLERLGLRLGRLKTGTPPRLDGRTID 214

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           W   E Q AD   +PFS +T++ITN QI CGITRT    H +I  N+  S +YSG I S 
Sbjct: 215 WSGLEMQEADAEPVPFSTLTERITNPQIRCGITRTTRAVHDLIRANLHRSPMYSGGIASR 274

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   +YPNGISTALPE +Q   +R IPGLE
Sbjct: 275 GPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPTIYPNGISTALPEAVQRDLVRLIPGLE 334

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           +V I+RPGYAIEYDY++P+EL   L+ K++ GLFLAGQINGTTGYEEAA QGLVAG+N+A
Sbjct: 335 RVEILRPGYAIEYDYVDPRELDLGLQVKRLPGLFLAGQINGTTGYEEAAGQGLVAGLNAA 394

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           R +  L    F R +SY+GVMIDDL ++GV EPYRMFTSR+EYR+SLR DNAD RLTP G
Sbjct: 395 RHAGGLGIAGFDRAESYLGVMIDDLVTQGVSEPYRMFTSRSEYRLSLRVDNADARLTPRG 454

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
           + LGC+G  R  +FA         R+ L ++ LT    +   IS  +DG  RT ++ L+Y
Sbjct: 455 IALGCVGGHRAAQFAAGQAALGAARARLDAVSLTPSQAAPHGISLNRDGIRRTGFQLLAY 514

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           P+    +L ++ PD  +    + +R++ +++YA Y  RQ  +    + +E   +P   DY
Sbjct: 515 PEIGWADLAAVWPDLAEVPPRIADRMKTDATYAVYLDRQNADIAAFRRDEAVRLPPGLDY 574

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 575 AAISGLSNEMRVKLETVRPGTLGQAARIEGVTP 607


>gi|126738504|ref|ZP_01754209.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
 gi|126720303|gb|EBA17009.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
          Length = 581

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/573 (55%), Positives = 402/573 (70%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGHLVREIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y
Sbjct: 1   MSCNPAIGGLGKGHLVREIDAMDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRSVY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R  M RE  +Q+NL +I+GE   F  +   +S +V+ DNS I    V+LT+GTFLRGVIH
Sbjct: 61  RSEMLRETKAQKNLTIIEGEATDFVMKGTTVSGVVLADNSEISAGAVILTSGTFLRGVIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG      GRMGD PS  L      F+   GRLKTGTP RLDG+TI WD  EKQ  DE  
Sbjct: 121 IGDSSHSGGRMGDRPSIKLAEKLQSFELPLGRLKTGTPPRLDGRTINWDILEKQPGDEDP 180

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
           + FSF T K+   Q++CGIT TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIV
Sbjct: 181 VFFSFQTQKLNIPQVDCGITHTNEKTHEIIRENLSRSAMYGGHIDGIGPRYCPSIEDKIV 240

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF E+N HQIFLEPEG+    VYPNGIST+LP ++Q  ++R+I GLE   I++ GYAIEY
Sbjct: 241 RFAEKNSHQIFLEPEGVRDSTVYPNGISTSLPVDVQEDYVRSIIGLEAAKILQSGYAIEY 300

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L   LE K + GL+LAGQINGTTGYEEAAAQGLVAG+N+ARK  + D I FSR
Sbjct: 301 DYVDPRALTLELELKDVPGLYLAGQINGTTGYEEAAAQGLVAGVNAARKVLEKDPIIFSR 360

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            +SYIGVMIDDLT+ GV EPYRMFTSRAE+R+SLR DNAD RLTP G  +GCI E R K 
Sbjct: 361 ANSYIGVMIDDLTTNGVTEPYRMFTSRAEFRLSLRADNADQRLTPEGHSIGCISEERWKA 420

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F+   ++ +  R  L+    T K +SS  I   QDGK RT +E L +P+ S  ++ ++ P
Sbjct: 421 FSAKSEKLDTARRHLEGNRFTPKQVSSAGIHVNQDGKKRTGFEVLGFPNVSFNDVANLVP 480

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +       + ++L+ ++ Y+ Y  RQ  E   +K +E   IP+DFDYS +  LS EL +K
Sbjct: 481 EVLSTEPEIQKQLERDALYSNYIVRQEREIAAMKKDEGHKIPRDFDYSLIEGLSAELIQK 540

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           L+  +P  L +AS+I GMTPA L L+L  +++N
Sbjct: 541 LTAARPETLAKASRINGMTPAGLALVLARLRRN 573


>gi|316931725|ref|YP_004106707.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           DX-1]
 gi|315599439|gb|ADU41974.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           DX-1]
          Length = 622

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/615 (54%), Positives = 439/615 (71%), Gaps = 1/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIGGGHAGCEAAA AA++GA+TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SFDVIVIGGGHAGCEAAAAAARIGAATALVTHRYATIGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  NL VI+GE 
Sbjct: 64  LDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQTAIFATPNLSVIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ I + D   +  + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DVLLWRDGRVTGIRLGDGRELAAAAVVITTGTFLRGLIHLGERSWPAGRIDEAPAMGLSG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           SF    F  GRLKTGTPARLDG+TI W   E Q  D+   PFS +T  IT  QIECGITR
Sbjct: 184 SFEALGFTLGRLKTGTPARLDGRTIDWGAVEMQPGDDPPEPFSVLTPAITTPQIECGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+   
Sbjct: 244 TTPATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   ++TIPGLE+  + RPGYAIEYD+++P+EL PTL+T+++ GLF
Sbjct: 304 VYPNGISTSLPEEVQRAILKTIPGLEQTEMFRPGYAIEYDHVDPRELEPTLQTRRLRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   D   F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDQAVFDRADGYLGVMIDDLVTRGIAEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+GE R       +      R+L +SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDKGVSLGCVGEERSAFHRGKMAALFEARALAQSLAIT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A++ LSYP+     + +I P+  K   ++   ++I++ Y  
Sbjct: 484 PNEAAKYGLALNRDGQRRSAFDLLSYPEIDWAQVRAIWPELGKVDPVIATHVEIDAKYHV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L   D DY+++P LSNE + +L   +P  + QA +++G+TPA
Sbjct: 544 YLERQTADVEAFRRDES-LRLTDVDYAAVPGLSNEARTRLERHRPHTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           AL +L  Y+++   K
Sbjct: 603 ALGILAAYLRREERK 617


>gi|90421814|ref|YP_530184.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisB18]
 gi|122477630|sp|Q21CM1|MNMG_RHOPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|90103828|gb|ABD85865.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisB18]
          Length = 625

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/615 (53%), Positives = 440/615 (71%), Gaps = 1/615 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MQTSFDVIVIGGGHAGCEAAAAAARLGATTALVTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  IL+  +L V++
Sbjct: 61  VDALDGLMGRVADQGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQALILATPHLSVVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E     T    I+ I + D   +    VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 AEADDLLTSDGRITGIRLADGRELGAGAVVITTGTFLRGLIHLGERSWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTP RLDG++I W   E Q  DE   PFS +T+KITN QIECG
Sbjct: 181 LSKSFERLGFALGRLKTGTPPRLDGRSIDWGAVEMQPGDEPPEPFSVLTEKITNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S +YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTPATHAVIRANVHRSPMYSGQIQSSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGL++  ++RPGYAIEYD+++P+EL PTL+ K++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILATIPGLQRTTMLRPGYAIEYDHVDPRELEPTLQAKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  ++    I F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAALLASGGGEIAFDRADGYLGVMIDDLVTRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +     +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTGQGIALGCVGAERTEFHTAKMAALAQAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG  R+A+E L+YP+     + +I P+       +   L+I+++
Sbjct: 481 AITPSQAAKHGLSLNRDGVRRSAFELLAYPEVDWARVEAIWPELAAIEPSIATHLEIDAT 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  L+  + DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YDVYLKRQTADVEGFRRDEGLLL-TEIDYALVPGLSNEARGRLEKARPRTVGQAGRLDGL 599

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL +L  Y++++
Sbjct: 600 TPAALGILAAYLRRD 614


>gi|157827958|ref|YP_001494200.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932646|ref|YP_001649435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. Iowa]
 gi|166200609|sp|A8GQL7|MNMG_RICRS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039353|sp|B0BW03|MNMG_RICRO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157800439|gb|ABV75692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907733|gb|ABY72029.1| glucose inhibited division protein A [Rickettsia rickettsii str.
           Iowa]
          Length = 622

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 434/610 (71%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+L
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQQADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSAHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|229586296|ref|YP_002844797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia africae ESF-5]
 gi|259495851|sp|C3PM94|MNMG_RICAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|228021346|gb|ACP53054.1| Glucose-inhibited division protein A [Rickettsia africae ESF-5]
          Length = 622

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 433/610 (70%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+L
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  +  +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNKNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|157964122|ref|YP_001498946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia massiliae MTU5]
 gi|166989739|sp|A8F0G3|MNMG_RICM5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157843898|gb|ABV84399.1| Glucose-inhibited division protein A [Rickettsia massiliae MTU5]
          Length = 622

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 434/610 (71%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|34580957|ref|ZP_00142437.1| glucose inhibited division protein A [Rickettsia sibirica 246]
 gi|28262342|gb|EAA25846.1| glucose inhibited division protein A [Rickettsia sibirica 246]
          Length = 622

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 434/610 (71%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+L
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|84501194|ref|ZP_00999399.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
 gi|84390485|gb|EAQ02973.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
          Length = 596

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/577 (54%), Positives = 401/577 (69%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA TAL+T +   IG MSCNPAIGGLGKGHLVREIDA+DG+MGR+AD AGIQFR+LN +
Sbjct: 1   MGARTALVTLRKDGIGVMSCNPAIGGLGKGHLVREIDAMDGVMGRIADRAGIQFRLLNRR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR Q+DR++YR AM  E+    NL +++ EV  F      +S + +     + 
Sbjct: 61  KGPAVQGPRAQSDRKIYRTAMLAELEGTPNLTILEDEVTDFVMNGGQVSGVALNGADTLT 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
               VLTTGTFLRGVIHIG +  P GRMGD PS  L      F    GRLKTGTP RLDG
Sbjct: 121 AGATVLTTGTFLRGVIHIGDVSRPGGRMGDRPSVRLAERIDDFGLPLGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI WD  E+Q  D+  + FSF++ K+   Q+ CGIT TN ETH II  N+  SA+Y G 
Sbjct: 181 RTINWDVLEEQPGDDTPVLFSFLSSKVMAPQVSCGITHTNEETHEIIRANLNRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I   GPRYCPSIEDK+VRF E+  HQIFLEPEG +   VYPNGIST+LP+++Q  ++ +I
Sbjct: 241 IDGVGPRYCPSIEDKVVRFAEKTSHQIFLEPEGADDPTVYPNGISTSLPQDVQEDYVHSI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE+  I++PGYAIEYDY++P+ L   L+ K + GLFLAGQINGTTGYEEAAAQGLVAG
Sbjct: 301 RGLEQTEIVQPGYAIEYDYVDPRVLDLRLQLKSVPGLFLAGQINGTTGYEEAAAQGLVAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A  S   D + FSR+DSYIGVMIDDLT++GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAAASSLGSDAVQFSRSDSYIGVMIDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TP G+++GCIG+ R +RF+  ++     R+L++S   + K   S  I   QDG  R+AY+
Sbjct: 421 TPKGLEVGCIGDERSRRFSDKMERLEAGRALMESTSYSPKEALSVGIKLSQDGNRRSAYQ 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            LS  D S   L ++ P        + ++L  ++ YA+Y  RQ  + + I+ +E   IP+
Sbjct: 481 LLSLQDVSFDQLEALDPRLCSVDQGIQDQLAKDALYASYILRQEKDVEAIRRDEAHAIPE 540

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           DF Y  L  LS+EL+ KLS  +P NL QA+K+EGMTP
Sbjct: 541 DFGYGDLDGLSSELRSKLSAARPANLAQAAKVEGMTP 577


>gi|163742611|ref|ZP_02149997.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
 gi|161384196|gb|EDQ08579.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
          Length = 624

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/603 (53%), Positives = 423/603 (70%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDV+V+GGGHAG EAA  AA++G  TAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHPNYDVVVVGGGHAGTEAAHAAARMGVKTALVTLTKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  EI +Q NLD++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAEIEAQPNLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GEV  F    + I  + + D S I    V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 TGEVVDFLMTGDKIRGVRLADESEITSRAVILTSGTFLRGVIHIGDVSKPGGRMGDRPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      FD   GRLKTGTP RLDG+TI W+K E Q  D+    FSF+T  ++  Q+ C
Sbjct: 181 RLAERLDSFDLQLGRLKTGTPPRLDGRTIAWEKLEGQPGDDDPTFFSFLTTSVSASQVVC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN  TH II +N++ SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG+
Sbjct: 241 GITHTNTHTHDIIRDNLERSAMYGGHIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LP ++Q +++R+I GLE   I++PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DDHTVYPNGISTSLPLDVQERYVRSIVGLEDAVILQPGYAIEYDYVDPRALGLDLALKSY 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLVAG+N+AR S +++ + FSR+DSYIGVM+DDLT+ GV
Sbjct: 361 QGLYLAGQINGTTGYEEAAAQGLVAGLNAARYSKEMEPVTFSRSDSYIGVMVDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT IG  LGC+GE R+  F++ +++    R+ + +
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTGIGSNLGCVGEVRRGLFSRKMEKLEEARAKMDA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K ++   I+  QDG  RTA + L++PD + +++  + PD       +  +++ ++
Sbjct: 481 RQFTPKEINEAGIAVNQDGNRRTATDVLAFPDVAFEDILRLLPDLETCEDPIRRQIERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E + +K +E   IP DF Y     LSNEL+ KL   +P  L QA +++G
Sbjct: 541 LYANYIIRQKREIEALKRDEGYRIPPDFSY-DFEGLSNELRGKLEKSRPETLAQAGRVDG 599

Query: 601 MTP 603
           MTP
Sbjct: 600 MTP 602


>gi|83309101|ref|YP_419365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Magnetospirillum magneticum AMB-1]
 gi|123543730|sp|Q2WBG9|MNMG_MAGSA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|82943942|dbj|BAE48806.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Magnetospirillum magneticum AMB-1]
          Length = 637

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/618 (53%), Positives = 427/618 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S DV+VIG GHAGCEAAA AA+ GA T L+T +  TIG MSCNPAIGGL KG LVREIDA
Sbjct: 16  SCDVVVIGAGHAGCEAAAAAARFGARTVLLTQRLETIGEMSCNPAIGGLAKGQLVREIDA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +DGLMGRV D AGIQFR+LN  KG AV+GPR QADR+LYRLAM+  +   ENL +++G  
Sbjct: 76  MDGLMGRVIDRAGIQFRILNRSKGAAVQGPRAQADRKLYRLAMRAALDETENLSLLEGSA 135

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ +V+ D S I C  VV+TTGTFLRG+IH+G+   PAGR+GD+PS  L  
Sbjct: 136 EDLVITDGRVAGVVLADGSTIACGAVVITTGTFLRGLIHLGEKTWPAGRVGDAPSLGLSL 195

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +     GRLKTGTPARLDG+TI WD  ++Q  D+  +PFS++T++IT  Q+ CGIT 
Sbjct: 196 ALERAGLPLGRLKTGTPARLDGRTIHWDSLDRQEGDDPPVPFSYLTERITTPQVACGITA 255

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N++ + +YSG I+S GPRYCPSIEDK+VRF +R  HQIFLEPEGL+   
Sbjct: 256 TTPETHAIIRANLERAPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQIFLEPEGLDDHT 315

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q   I TIPGLE+  +IRPGYAIEYD+++P+ L  +LETK + GLF
Sbjct: 316 VYPNGISTSLPEDVQLAMIATIPGLEQCRVIRPGYAIEYDFVDPRALHRSLETKGVGGLF 375

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGL+AG+N+AR+      +   R D+Y+GVMIDDL S G  EPY
Sbjct: 376 LAGQINGTTGYEEAAGQGLMAGLNAARRCAGSAPLVLDRADAYLGVMIDDLVSLGTSEPY 435

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD+RLTP G + GC+   R   F          R+LL+SL  +
Sbjct: 436 RMFTSRAEYRLLLRADNADSRLTPKGREAGCVDSERWAAFMVKAAGLERGRALLQSLKGS 495

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              L    +   +DG  R+A++ L+YP+  +Q L ++ P+    S  V E+L+IE  YA 
Sbjct: 496 PDWLRRQGLEINRDGVVRSAWDLLAYPELGLQALAAVWPELDSLSGAVAEQLEIEGRYAG 555

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + EE   +  D DY ++ +LSNE+++KL   +P  L  A++I G+TPA
Sbjct: 556 YLDRQEADIRAYRREEGLALSADLDYDAIGSLSNEVRQKLKAARPETLAAAARIPGVTPA 615

Query: 605 ALNLLLIYIKKNTVKLNE 622
           A+  LL ++KK  +   E
Sbjct: 616 AVTALLGHVKKMVLDWAE 633


>gi|157825212|ref|YP_001492932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia akari str. Hartford]
 gi|166199726|sp|A8GLZ9|MNMG_RICAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157799170|gb|ABV74424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia akari str. Hartford]
          Length = 622

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/610 (52%), Positives = 432/610 (70%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG ST LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVSTLLITLKPDNLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + +++IV+ ++S I C  ++LTTGTFL G+IHIGK KIPAGR+ + PS  L  +
Sbjct: 124 DIEIKSSKVAAIVLNNDSKIPCQKIILTTGTFLSGLIHIGKKKIPAGRVDEEPSYGLSKT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKKVGFKIARLKTGTPPRIDGRTIDYSKTALQPGDKAPRPFSELTNVVNVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLNKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++R GYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRLGYAIEYDYVDPREISVTLETKKIAGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAQFILTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +G+ +G I E+R+K F K  ++    +SLL +L  T+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGINIGVISEKRKKIFTKKYEDIEKTKSLLNTLSFTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P F+I+    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMDIQVAQDGTYKTVLDLFKIPSFNIEQAIKIFPMLKEMQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQQADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGLARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITSIIIYLK 613


>gi|239946969|ref|ZP_04698722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921245|gb|EER21269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 622

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/610 (52%), Positives = 430/610 (70%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAATSARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI ++ LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKTLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTINYSKTILQPGDKIPRPFSELTNVVNVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q++ I+TI GLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEDVQYKLIKTILGLENAKVLRPGYAIEYDYVDPREISVTLETKKIAGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +GM +G + E+R+K F K  ++    +SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGMNIGVVSEKRKKIFTKKCEDIEKTKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPATIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|238650523|ref|YP_002916375.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia peacockii str. Rustic]
 gi|259495852|sp|C4K176|MNMG_RICPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238624621|gb|ACR47327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia peacockii str. Rustic]
          Length = 622

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 433/610 (70%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITTT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+L
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQFIPKNLDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|15892007|ref|NP_359721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia conorii str. Malish 7]
 gi|21263671|sp|Q92JI3|MNMG_RICCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15619122|gb|AAL02622.1| glucose inhibited division protein A [Rickettsia conorii str.
           Malish 7]
          Length = 622

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/610 (52%), Positives = 434/610 (71%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+L
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L L++
Sbjct: 424 MFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLST 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|163737993|ref|ZP_02145409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phaeobacter gallaeciensis BS107]
 gi|161388609|gb|EDQ12962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phaeobacter gallaeciensis BS107]
          Length = 627

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/599 (53%), Positives = 422/599 (70%), Gaps = 1/599 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+GGGHAG EAA  AA++G  TAL+T     IG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   NYDVVVVGGGHAGTEAAHAAARMGVKTALVTLTKDGIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+M RVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  EI +Q NLD++ GEV
Sbjct: 68  LDGVMARVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAEIEAQPNLDIVTGEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  + + I  + + D S I    V+LT+GTFLRGVIHIG +  P GRMGD PS  L  
Sbjct: 128 VDFLMKGDKIRGVRLADESEITSHAVILTSGTFLRGVIHIGDVSKPGGRMGDKPSVRLAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
               FD   GRLKTGTP RLDG+TI W+K E Q  D+    FSF+T  ++  Q+ CGIT 
Sbjct: 188 RLDSFDLQLGRLKTGTPPRLDGRTIAWEKLEGQPGDDDPTFFSFLTTSVSASQVVCGITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II +N++ SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG++   
Sbjct: 248 TNTHTHDIIRDNLERSAMYGGHIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGVDDHT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q  ++R++ GLE   I++PGYAIEYDY++P+ L   L  K   GL+
Sbjct: 308 VYPNGISTSLPLDVQEHYVRSVVGLEDAVILQPGYAIEYDYVDPRALGLDLALKSCQGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+AR S +++ + FSR+DSYIGVM+DDLT+ GV EPY
Sbjct: 368 LAGQINGTTGYEEAAAQGLVAGLNAARYSKEMEPVTFSRSDSYIGVMVDDLTTNGVTEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLT IG  LGC+GE R++ F++ +++   +R+ + +   T
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTGIGSNLGCVGEVRRELFSRKMEKLEEVRARMDTRQFT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K ++   I+  QDG  RTA + L++PD + +++  + P+       +  +++ ++ YA 
Sbjct: 488 PKEINEAGIAVNQDGNRRTATDVLAFPDVAFEDILRLLPELETCEDSIRRQIERDALYAN 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  E + +K +E   IP DF Y     LSNEL+ KL   +P  L QA +++GMTP
Sbjct: 548 YIIRQKREIEALKRDEGYRIPSDFSY-DFEGLSNELRGKLEKSRPGTLAQAGRVDGMTP 605


>gi|91974910|ref|YP_567569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisB5]
 gi|123763117|sp|Q13E21|MNMG_RHOPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91681366|gb|ABE37668.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisB5]
          Length = 626

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/618 (54%), Positives = 437/618 (70%), Gaps = 1/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRNSYDVIVIGGGHAGCEAAAAAARLGATTALVTHRFATIGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  +L VI+
Sbjct: 61  VDALDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQAAIRATVHLSVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE     +    ++ I + D        VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADALLSADGRVTGIRLADGREFAAGAVVITTGTFLRGLIHLGEQSWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF    F  GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECG
Sbjct: 181 LSRSFEALGFALGRLKTGTPPRLDGRTIDWGAVEMQPGDDPPEPFSVLTPAITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I +N+  S +YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTPATHAVIRDNVHRSPMYSGQIQSTGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   ++TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILKTIPGLERTELVRPGYAIEYDHVDPRELEPTLQTKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+   +   D   F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAVLAAGGGDPAVFDRADGYLGVMIDDLVTRGIN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGLALGCVGAERAAFHRTKMAALADAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    S   +S  +DG+ R+A++ LSYP+     + +I P+    S  +   ++I++ 
Sbjct: 481 SITPNEASRHGLSLNRDGQRRSAFDLLSYPEIGWDEVKAIWPELAAVSPAIAVHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  L+  + DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YHVYLARQTADVEAFRRDEGLLL-TEIDYAQVPGLSNEARNRLERHRPRTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAAL +L  Y+++   K
Sbjct: 600 TPAALGILAAYLRREARK 617


>gi|260428764|ref|ZP_05782741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citreicella sp. SE45]
 gi|260419387|gb|EEX12640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citreicella sp. SE45]
          Length = 622

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/580 (52%), Positives = 408/580 (70%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T   + IG MSCNPAIGGLGKGHLVREIDA+DG+MGRVAD AGIQFR+LN 
Sbjct: 26  RMGAKTALVTLTEAGIGVMSCNPAIGGLGKGHLVREIDAMDGVMGRVADRAGIQFRLLNR 85

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KGPAV+GPR QADR++YR  MQRE+    NL V++GEV         +  +V+ D S +
Sbjct: 86  RKGPAVQGPRAQADRKIYRETMQREMRGTPNLTVVEGEVVDLLLNGRTVGGVVLDDGSEL 145

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           + S VVLTTGTFLRGVIHIG    P GRMGD PS  L     +   + GRLKTGTP RLD
Sbjct: 146 KASAVVLTTGTFLRGVIHIGDKSRPGGRMGDRPSVRLAERIDELGLELGRLKTGTPPRLD 205

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI WD+ E+Q  DE  + FSF++      Q+ CGIT TN  TH II EN+  SA+Y G
Sbjct: 206 GRTIAWDQLEEQPGDEDPVLFSFLSAAPYAHQVSCGITHTNERTHEIIRENLDRSAMYGG 265

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   +YPNGIST+LPE++Q  ++R+
Sbjct: 266 HIEGIGPRYCPSIEDKVVRFSDKLSHQIFLEPEGLDDHTIYPNGISTSLPEDVQVDYVRS 325

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I++PGYAIEYD+++P+ L   L  + +SGLFLAGQINGTTGYEEA+AQGLVA
Sbjct: 326 IFGLENAVILQPGYAIEYDFVDPRSLDLRLAVRNVSGLFLAGQINGTTGYEEASAQGLVA 385

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A ++   D + F R+DSYIGVM+DDLT++GV EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 386 GLNAAAEALGRDPVQFGRSDSYIGVMVDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQR 445

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  ++LGC+   R+  F + ++     R +L++     + L    +    DG+ R  +
Sbjct: 446 LTPKAIELGCLSNERRASFERKMERLAQGRKMLETRQFAPRTLVDMGLQVAPDGQKRNGF 505

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + L++PD ++  L S  P   +    +  +L+ ++ YA Y  RQ  + + ++ +E  +IP
Sbjct: 506 QLLAFPDVTMSTLVSGEPSFSEIDPEIALQLERDALYANYIERQKRDVEALRRDEAMVIP 565

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
           +DFD++++  LSNELK KLS+ +P NL QA  ++GMTPAA
Sbjct: 566 RDFDFAAVEGLSNELKHKLSLARPENLAQAGNVDGMTPAA 605


>gi|144899661|emb|CAM76525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 622

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/585 (52%), Positives = 396/585 (67%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L T +  TIG MSCNPAIGGL KG LVREIDALDG+MGR  D  GIQFR+LN  KGPA
Sbjct: 34  TILATQRLETIGEMSCNPAIGGLAKGQLVREIDALDGVMGRAIDKGGIQFRILNRSKGPA 93

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+GPR QADR+LYR A+Q  +  Q+NL ++QG V     +   ++  V+ D   I C  V
Sbjct: 94  VQGPRAQADRKLYRQAVQALLAEQDNLTLVQGSVEDLIYKDGRVAGAVLADGRTITCGAV 153

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+TTGTFLRG+IH G+   PAGR GD P+N+L  +  +      RLKTGTPARLDG+TI 
Sbjct: 154 VVTTGTFLRGLIHCGEKTWPAGRFGDEPANNLSTALARAGLPLDRLKTGTPARLDGRTIH 213

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           WD+ E Q  D+  +PFS++TD+I+  QI CGIT TN  TH II  N+  + +YSG I+S 
Sbjct: 214 WDQLEMQAGDDPPVPFSYLTDRISTPQIACGITHTNERTHAIIRANLHRAPMYSGQIQSV 273

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK+VRF  ++ HQIFLEPEGL+   VYPNGIST+LP ++Q   IRTIPGLE
Sbjct: 274 GPRYCPSIEDKVVRFAGKDSHQIFLEPEGLDDPTVYPNGISTSLPADVQEAMIRTIPGLE 333

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
            V+IIRPGYAIEYD+++P++L  +LETK ++GLFLAGQINGTTGYEEA AQGL+AG+N+A
Sbjct: 334 DVSIIRPGYAIEYDFVDPRQLKRSLETKVMNGLFLAGQINGTTGYEEAGAQGLLAGLNAA 393

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           R     +     R D+Y+GVM+DDL S G  EPYRMFTSRAEYR+ LR DNAD RLT  G
Sbjct: 394 RFVAGNEAFVLDRADAYMGVMVDDLVSLGTREPYRMFTSRAEYRLILRADNADLRLTAKG 453

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
           M+ GC+G  R   F    Q     R LL SL  +   L    +   QDG  R+A++ L+Y
Sbjct: 454 MEAGCVGSVRADAFTAKAQALEEGRGLLDSLRASPNVLKKAGLEVNQDGVVRSAWDLLAY 513

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           P+  +  L  + P     S  V E+L+I+  Y  Y  RQ  + +  + EE   +P D DY
Sbjct: 514 PNMDLPRLAQVWPALAALSGAVAEQLEIDGKYQGYLSRQEADIRAYRAEENLTLPADMDY 573

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++ +LS E+++KL   +P  L  A++I G+TPAA+  LL ++K+
Sbjct: 574 DAIGSLSAEVRQKLKAAQPETLAVAARISGITPAAITALLAHVKR 618


>gi|126463650|ref|YP_001044764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides ATCC 17029]
 gi|166199725|sp|A3PNS6|MNMG_RHOS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126105314|gb|ABN77992.1| glucose inhibited division protein A [Rhodobacter sphaeroides ATCC
           17029]
          Length = 621

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/612 (53%), Positives = 421/612 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAGCEAAA AA++G   ALIT + S +G MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVVVIGGGHAGCEAAATAARMGVQVALITLRKSGLGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGR AD AGIQFR+LN KKGPAV+GPR QADR LYR A+QR +  Q  L +I+GE
Sbjct: 62  ALDGIMGRAADEAGIQFRLLNRKKGPAVQGPRAQADRRLYREAVQRLLAEQPGLTIIEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  + + D + +    V+LT+GTFL GVIHIG  + P GRMGD PS  L 
Sbjct: 122 VVDLQVNGGRVQGVSLADGTSVGAGRVILTSGTFLNGVIHIGDQRRPGGRMGDDPSQRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG+TI W + E Q  DE  + FSF+      RQI CGIT
Sbjct: 182 AVLGELSLARGRLKTGTPPRLDGRTIRWAELEMQPGDEDPVVFSFLNRVPKARQIACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D
Sbjct: 242 HTNARTHQIVRDNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP E+Q  ++RTI GLE V I++PGYAIEYDY +P+EL PTLE K + GL
Sbjct: 302 TVYPNGISTSLPAEVQEAYVRTIAGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL AG+N+A    + + + FSR+ SY+GVMIDDLTS+GV EP
Sbjct: 362 YFAGQINGTTGYEEAAAQGLAAGLNAALSIREREPLHFSRSGSYLGVMIDDLTSRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F K  +     R+LL+    
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPIGLDLGCVSDARRESFNKKRELLEKGRALLEGSSF 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I   QDG  RTA+  +++ + +   +             + ++L  +  YA
Sbjct: 482 TPSQLNELGIQVSQDGMRRTAFAVMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  EA  +K +E   IP DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP
Sbjct: 542 QFILRQEEEAAALKRDEAIRIPADFDYAPLSGLSSELKAKLMRARPSTIAQAAQLEGMTP 601

Query: 604 AALNLLLIYIKK 615
           +AL L+L  +++
Sbjct: 602 SALTLILARLRR 613


>gi|115522412|ref|YP_779323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisA53]
 gi|122297910|sp|Q07UP1|MNMG_RHOP5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115516359|gb|ABJ04343.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisA53]
          Length = 622

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/613 (54%), Positives = 434/613 (70%), Gaps = 1/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAGCEAAA AA+LGA TAL+TH+ ST+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   AFDVIVIGGGHAGCEAAAAAARLGARTALLTHRFSTVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG+VADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  NL VI+ E 
Sbjct: 64  LDGLMGQVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQAAIRAIANLTVIEAEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               T    I+ I + D        VV+TTGTFLRG+IH+G+   PAGR+ ++P+  L  
Sbjct: 124 DDLLTADGRITGIRLADGREFSTGAVVVTTGTFLRGLIHLGEQSWPAGRIDEAPALGLSA 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +F +  F  GRLKTGTPARLDGKTI W+  E Q  D+   PFS +T +I+N QI CGITR
Sbjct: 184 AFERIGFALGRLKTGTPARLDGKTIYWEAVEMQPGDDPPEPFSVLTARISNPQILCGITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 244 TTPATHDLIRANVHRSPMYSGQIQSSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDAT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE+ N++RPGYAIEYD+++P+EL PTL+ K++ GLF
Sbjct: 304 VYPNGISTSLPEEVQRGILATIPGLERCNMLRPGYAIEYDHVDPRELQPTLQAKRMRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+AR +   + + F R D Y+GVMIDDL ++G+ EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLVAGLNAARCAGGGEGVVFDRADGYLGVMIDDLVTRGITEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+  G +G  R     + +      ++  +SL +T
Sbjct: 424 RMFTSRAEYRLTLRADNADQRLTDQGIAHGLVGAERAAFHRRKMAALAAAKTWARSLAVT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG  R+A+E L+YP+    ++  I P+       +   L+I++ Y  
Sbjct: 484 PNEAAKHGLALNRDGVRRSAFELLAYPEVGWDDVRRIWPELGAVEPAIAVHLEIDAKYDV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  L+  D DYS +P LSNE + KL   +P  + QA +++G+TPA
Sbjct: 544 YLQRQTADVEAFRRDEG-LVLTDIDYSLVPGLSNEARGKLEKARPRTVGQAGRLDGITPA 602

Query: 605 ALNLLLIYIKKNT 617
           AL +L  Y+++  
Sbjct: 603 ALGILAAYLRREA 615


>gi|217978726|ref|YP_002362873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylocella silvestris BL2]
 gi|254811514|sp|B8EQ21|MNMG_METSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|217504102|gb|ACK51511.1| glucose inhibited division protein A [Methylocella silvestris BL2]
          Length = 620

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/611 (55%), Positives = 431/611 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAGCEAAA AA++GA TAL+TH  +TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 4   AFDVIVVGGGHAGCEAAAAAARMGAKTALLTHSRATIGIMSCNPAIGGLGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFRVLN  KGPAVRGPR QADR LYR AM+  +    NL +++GE 
Sbjct: 64  LDGLMGRVADAAGIQFRVLNRAKGPAVRGPRAQADRALYRKAMRAALAETANLSIVEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   ++ IV  D   + C   V+TTGTFLRGVIH GK+ + AGR+G++P+  L  
Sbjct: 124 ADLRIENGEVTGIVTADGRALSCRAAVITTGTFLRGVIHRGKVTMAAGRIGENPAIRLGE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F  GRLKTGTP RLDGKTI W   ++Q  D    PFS +T  I N QI+C IT 
Sbjct: 184 TLEARGFAMGRLKTGTPPRLDGKTIDWAGLDRQAPDPDPQPFSTLTASIVNPQIDCFITH 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T + TH++I +NI  S +YSG I   GPRYCPSIEDK+VRF +RN HQIFLEPEGL+ D 
Sbjct: 244 TTVATHKVIRDNIGQSPVYSGAIGGRGPRYCPSIEDKVVRFEDRNSHQIFLEPEGLDDDT 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q  F+RTIPGLE+V +++PGYAIEYD+I+P+EL  TLETKK+ GLF
Sbjct: 304 IYPNGISTSLPEEVQDAFLRTIPGLERVAVLQPGYAIEYDFIDPRELKSTLETKKLGGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL AG+N+A ++     I F R+++Y+GVMIDDL  +GV EPY
Sbjct: 364 LAGQINGTTGYEEAAAQGLAAGLNAAARAGGGAPILFERSEAYLGVMIDDLVCRGVTEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G+K GCIG  R   F   +      R LL+   LT
Sbjct: 424 RMFTSRAEYRLSLRADNADQRLTGAGLKWGCIGMERSSAFRTKMAALQHARGLLEGFNLT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +    DG  R A+E L+  D S+  L +I P+ R+    + E+++I++ YA 
Sbjct: 484 PNEAAQHGLKINHDGVRRGAFELLALADTSLAKLQAIWPELREIEPSIAEQIEIDAKYAV 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + +  + +E  LIP   DY  L  LS E++ +L  ++P +L QAS+IEGMTP 
Sbjct: 544 YLDRQKRDIEAARRDEALLIPDSVDYDLLTGLSTEIRGRLRQIRPRSLAQASRIEGMTPV 603

Query: 605 ALNLLLIYIKK 615
           A+ LL   +++
Sbjct: 604 AMTLLAATVRR 614


>gi|51473287|ref|YP_067044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia typhi str. Wilmington]
 gi|81170574|sp|Q68XT0|MNMG_RICTY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51459599|gb|AAU03562.1| glucose inhibited division protein A [Rickettsia typhi str.
           Wilmington]
          Length = 621

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/609 (52%), Positives = 421/609 (69%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++ G+V 
Sbjct: 64  DGLMGFVIDKAGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + + ++++ +   I C  VVLTTGTFL G IHIG +KIPAGR+ + PS  L N+
Sbjct: 124 DIQIKSSKVEAVILNNGIKIFCQKVVLTTGTFLSGFIHIGSMKIPAGRIYEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+T
Sbjct: 184 LKRLGFKIARLKTGTPPRIDGRTIDYSKTTLQQGDQIPRPFSELTDAIDVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG IK  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    +
Sbjct: 244 TAETHDIIRENLDKSAMYSGQIKGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP+EIQ++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPKEIQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINITLETKKITGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A      +    +R  SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALSVKDQEPFILTRATSYIGVMIDDLTTSGTVEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +G+ +G + E+R+  F K        + LL  L LT+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGINIGVVTEKRKNIFTKKCNNIEKTKLLLNKLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             L+   I   QDGK +T  +    P F+++    I P  RK ++ +++ L IE+ YA+Y
Sbjct: 484 SKLAKIGIQVAQDGKYKTVLDLFKIPTFNVEQAIKIFPILRKQNNNILQLLYIEAKYASY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPAA
Sbjct: 544 LTRQYADINLFQSEEIQLIPKNIDYFKIPSISLEIQEKLSYHKPTTIGVARRISGITPAA 603

Query: 606 LNLLLIYIK 614
           +  ++IY+K
Sbjct: 604 IMAIIIYLK 612


>gi|67458511|ref|YP_246135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia felis URRWXCal2]
 gi|75537022|sp|Q4UN88|MNMG_RICFE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|67004044|gb|AAY60970.1| Glucose-inhibited division protein A [Rickettsia felis URRWXCal2]
          Length = 622

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/610 (52%), Positives = 432/610 (70%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LGAST LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGASTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D  GI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V 
Sbjct: 64  DGLMGYVIDQGGIHYKMLNETRGPAVWGPRAQADRKLYKKAMCQILTNYPNLDILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + + ++++ ++S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N+
Sbjct: 124 DIEIKSSKVEAVILNNDSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T  +   QI C IT+T
Sbjct: 184 LKKVGFKIARLKTGTPPRIDGRTIDYSKTALQPGDKTPRPFSELTSVVNVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLNKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +G+ +G + E+R+K F K  ++    + LL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGINIGVVSEKRKKIFTKKCEDIEKTKLLLNTLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAA 544
             L+   I   QDG  +T  +    P F+++    I P  ++  ++ +++ L IE+ YA+
Sbjct: 484 SKLAKMGIQVAQDGTYKTVLDLFKIPSFNVEQAIKIFPMLKEMQNNNILQLLYIEAKYAS 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 544 YLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRISGITPA 603

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 604 AITAIIIYLK 613


>gi|260576110|ref|ZP_05844103.1| glucose inhibited division protein A [Rhodobacter sp. SW2]
 gi|259021590|gb|EEW24893.1| glucose inhibited division protein A [Rhodobacter sp. SW2]
          Length = 621

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 337/613 (54%), Positives = 440/613 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAGCEAAA AA+LGA+TAL+T K + IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVVVIGGGHAGCEAAAAAARLGATTALVTLKAAGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DGLMGRVAD AGIQ+R+LN +KGPAV+GPR QADR+LYRLAMQ E+     L +I+GE
Sbjct: 62  AMDGLMGRVADHAGIQYRLLNRRKGPAVQGPRAQADRKLYRLAMQHELRVLRGLTIIEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +S +V+   S +   +VVLT GTFL G+IHIG  +   GR+GD+PS  L 
Sbjct: 122 VVDLKERAGAVSGVVLACGSELTAGSVVLTAGTFLNGLIHIGDQRQSGGRIGDAPSLRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                     GRLKTGTP RLDG TI W   E Q  D+  + FSF+  K   RQ+ CGIT
Sbjct: 182 ERLSGLGLKKGRLKTGTPPRLDGNTIDWAVLESQAGDDEPVVFSFLHRKPFVRQVACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH I+ +N+  SA+Y G I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+  
Sbjct: 242 HTNEQTHDIVRKNLDRSAMYGGHIEGVGPRYCPSIEDKVVRFADKASHQVFLEPEGLDDT 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIS++LP E+Q  ++R+I GLE+V I++PGYAIEYDY +P+ L PTL  K ++GL
Sbjct: 302 TVYPNGISSSLPAEVQMDYVRSIVGLERVQILQPGYAIEYDYFDPRSLMPTLRLKAMAGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGL AG+N+A  +   D   FSR+ SYIGVMIDDL + GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLAAGLNAALAAFGRDPHLFSRSQSYIGVMIDDLLNHGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR DNAD RLTP+GM LGC+G+ RQ+ FA  +QE     + L+SL+L
Sbjct: 422 YRMFTSRAEFRLTLRADNADQRLTPVGMALGCVGQHRQRVFAAKMQELAKGTAALQSLLL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             K + S  +   QDG  R+A E L++PD S++ + S+CP+         +++  ++ YA
Sbjct: 482 PPKAIESLGVKISQDGNRRSALEVLAFPDSSVEGIASVCPEFAAIEQENRQQIWRDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y+ RQ + A+ ++ +E   IP DFDY +L  LS+EL  KL  ++P +LLQAS++EGMTP
Sbjct: 542 QYSQRQSVAAEALRRDESVTIPADFDYGALSGLSSELTSKLKAVQPVSLLQASRMEGMTP 601

Query: 604 AALNLLLIYIKKN 616
           AAL L+L  ++++
Sbjct: 602 AALTLILARLRRS 614


>gi|89052691|ref|YP_508142.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jannaschia sp. CCS1]
 gi|122499792|sp|Q28VZ5|MNMG_JANSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88862240|gb|ABD53117.1| glucose inhibited division protein A [Jannaschia sp. CCS1]
          Length = 624

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/613 (52%), Positives = 416/613 (67%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R +DVIV+GGGHAG EAA  A + GA TAL+T +   +G MSCNPAIGGLGKGHLVREI
Sbjct: 6   HRHFDVIVVGGGHAGVEAADAACRAGARTALVTLRKDDLGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+MG  ADA+GIQ+R+LN KKG AV+GPRTQ+DR LY+ A+Q  + +   L VI+G
Sbjct: 66  DAMGGVMGCAADASGIQYRLLNRKKGAAVQGPRTQSDRALYKSAIQDHMRNVTELTVIEG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EVA    E   +  +   D   I   +VVLTTGTFLRGVIHIG      GR G + +  L
Sbjct: 126 EVADVIVESETVCGVSFTDGQSISARSVVLTTGTFLRGVIHIGHETRSGGRFGANRAIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                  +   GRLKTGTP RL  K+I W+  + Q +D+    FSF+T ++  RQI CGI
Sbjct: 186 AERLSAMNLPVGRLKTGTPPRLAAKSINWEALDHQPSDDDPTFFSFLTKRVRARQIACGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  SA+Y G+I S GPRYCPSIEDK+VRF ++  HQIFLEPEGL +
Sbjct: 246 THTNPHTHDIIEQNLGRSAMYGGNIDSVGPRYCPSIEDKVVRFADKVSHQIFLEPEGLTS 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VYPNGIST+LP ++Q  ++ +I GLE  +I++PGYAIEYDYI+P  L   LE +   G
Sbjct: 306 ETVYPNGISTSLPIDVQLDYVHSIKGLEHADILQPGYAIEYDYIDPTCLNNRLELQDHPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D + FSR +SYIGV++DDL ++GV E
Sbjct: 366 LFLAGQINGTTGYEEAAAQGLVAGLNAAFHAQDRDPLTFSRRESYIGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLTPI   L  + E R   F   ++  +    +L  LV
Sbjct: 426 PYRMFTSRAEYRLSLRADNADQRLTPIAADLDLLTEERTSEFTAKMERLSRGYDILNDLV 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +TSK  ++  +S   DGK RT  E L++P   + ++  + P   +      ++L+IE+ Y
Sbjct: 486 VTSKQAAAAGMSVNADGKKRTGAELLAFPSVELSDIAQLEPAVGQIDPATAKQLKIEAIY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +A  +K +E + IP DF YSS+  LSNEL+ KL   +P  L QAS+I+GMT
Sbjct: 546 AVYIERQNQDAFALKRDEAKSIPADFPYSSVVGLSNELRMKLIKTRPSTLAQASRIDGMT 605

Query: 603 PAALNLLLIYIKK 615
           PAAL L+L  I++
Sbjct: 606 PAALALILTKIRQ 618


>gi|288956853|ref|YP_003447194.1| glucose inhibited division protein A [Azospirillum sp. B510]
 gi|288909161|dbj|BAI70650.1| glucose inhibited division protein A [Azospirillum sp. B510]
          Length = 634

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/614 (53%), Positives = 421/614 (68%), Gaps = 2/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+GGGHAGCEAAA AA++GA T L+THK  TIG MSCNPAIGGL KGHLVREID
Sbjct: 6   RNFDVIVVGGGHAGCEAAAAAARMGARTLLLTHKIETIGEMSCNPAIGGLAKGHLVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+M +  D  GIQFR+LN  KGPAVRGPR QADR+LYR AMQ  +  Q+NL +  G 
Sbjct: 66  ALDGVMAKAIDRGGIQFRILNRSKGPAVRGPRAQADRKLYRQAMQALLAEQDNLFIEAGG 125

Query: 124 VAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E   I+ +V      IR   VVLTTGTFLRG+IHIG+ + PAGR+G++PS  L
Sbjct: 126 AEDLIVDEDQRITGVVTGAGESIRAGAVVLTTGTFLRGLIHIGEERTPAGRVGEAPSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            ++  +  F  GRLKTGTP RLDG+TI WD  EKQ  D    PFS+MT++I   QI+C I
Sbjct: 186 SDTLTRLGFPLGRLKTGTPPRLDGRTIDWDALEKQPGDLPPPPFSYMTERIDTPQIDCAI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H +I  N+  + +YSG I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+ 
Sbjct: 246 TWTTREAHALIRANLHRAPMYSGQITGTGPRYCPSIEDKVVRFADKEKHQIFLEPEGLDD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q   + ++PGLEKV +IRPGYAIEYDY++P+EL PTLET++  G
Sbjct: 306 PTVYPNGISTSLPRDVQLGILASMPGLEKVVMIRPGYAIEYDYVDPRELKPTLETRRAPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           LFLAGQINGTTGYEEAAAQGL+AGIN+A   S   D     R D+YIGV+IDDL  +G  
Sbjct: 366 LFLAGQINGTTGYEEAAAQGLMAGINAALAASGHRDGFVLDRADAYIGVLIDDLIGRGTN 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G+ +GC+G  R+  FA      +  R+L+ +L
Sbjct: 426 EPYRMFTSRAEYRLLLRADNADQRLTDKGVVIGCVGSERRDAFAAKSAALSAGRALVAAL 485

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T   L+   ++  QDG  R+A + L YPD  +  L  + P+    +  + E+L+I+  
Sbjct: 486 QATPVELARQGVAVNQDGVRRSAADLLRYPDIDLAALARLWPELGGIAPDIAEQLEIDGK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y GRQ  + +  + +E   +P D D   + +LS E+++KL   +P  L  A++I GM
Sbjct: 546 YAGYLGRQEADIRAFRKDESLALPDDLDVDGIGSLSAEIRQKLRQSRPATLGAAARIPGM 605

Query: 602 TPAALNLLLIYIKK 615
           TPAAL  LL ++K+
Sbjct: 606 TPAALVALLRHVKR 619


>gi|330813393|ref|YP_004357632.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486488|gb|AEA80893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 620

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/615 (52%), Positives = 427/615 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+V+GGGHAGCEAAA +A++G STAL+T   ++IG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   NFDVVVVGGGHAGCEAAAASARMGVSTALVTTNKNSIGEMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            DG+M +V+DA+GIQF++LN  +GPAVRGPRTQ+DR LY+  M   ++S  NL++I   V
Sbjct: 63  FDGVMPKVSDASGIQFKLLNASRGPAVRGPRTQSDRALYKKNMLENLISHCNLNIIYDPV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  E++ I SI++     I+   ++LTTGTFL GVIHIG    PAGR G++P++ L  
Sbjct: 123 TSFVFEQDNIKSIILASGKEIKFKKIILTTGTFLNGVIHIGSQMTPAGRFGEAPTSGLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              KF+   GRLKTGTP RLD +TI +D  EKQ ADE    FS  T KI ++QI C IT 
Sbjct: 183 QLQKFNLMFGRLKTGTPPRLDARTINFDSLEKQVADENPFFFSTETKKINSKQIACSITY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H+II  NIK SA+YSG+IK  GPRYCPSIEDKIV+F ++  HQIFLEPEGLN   
Sbjct: 243 TNDEVHKIISRNIKKSAMYSGNIKGVGPRYCPSIEDKIVKFADKQRHQIFLEPEGLNDHT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q + +  I GL +V +IRPGYAIEYDY++P+EL  TLE KKIS  +
Sbjct: 303 IYPNGISTSLPEDVQREILFNINGLSEVKMIRPGYAIEYDYVDPRELKSTLELKKISSFY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AG+N++      + +   R+ +YIGVMIDDL +KGV EPY
Sbjct: 363 LAGQINGTTGYEEAAAQGLMAGLNASLAVKGHEPLILDRSQAYIGVMIDDLITKGVAEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RL+PI M++GC+   R K+  + I++ + ++  L ++ L+
Sbjct: 423 RMFTSRAEYRLTLRADNADLRLSPIAMRIGCVSLERCKKIEEKIKKIDMVKISLSNVSLS 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   IS   DG  R   + L Y +     L SI  +       +I +L+IE+ Y  
Sbjct: 483 PNEAKKHGISISMDGVKRNGIDLLRYKNVDYDKLKSIFKELPDSEEDIIGQLKIENHYKG 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  + K+ K +E   +P D DY  +  L+ E+K KL ++KP    QA +I+GMTPA
Sbjct: 543 YYAKQDADIKKFKKDENLKVPSDIDYDKISGLTEEVKNKLRVVKPETFGQALRIDGMTPA 602

Query: 605 ALNLLLIYIKKNTVK 619
           A+NLLL + K+   K
Sbjct: 603 AINLLLAHTKRYKFK 617


>gi|86747517|ref|YP_484013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris HaA2]
 gi|123409026|sp|Q2J358|MNMG_RHOP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86570545|gb|ABD05102.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           HaA2]
          Length = 626

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 335/623 (53%), Positives = 440/623 (70%), Gaps = 1/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRNSYDVIVIGGGHAGCEAAAAAARLGAATALVTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  NL VI+
Sbjct: 61  VDALDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQAAIRATANLRVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      E   ++ I + D   +    VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADTLLNEAGRVTGIRLADGRELVAGAVVITTGTFLRGLIHLGEQCWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF       GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECG
Sbjct: 181 LSASFEALGLALGRLKTGTPPRLDGRTIDWGAVEMQPGDDPPEPFSVLTPAITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTLPATHEVIRANVHRSPMYSGQIQSSGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILATIPGLERTVMLRPGYAIEYDHVDPRELEPTLQTKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLVAGLNAALAAGGGEGVVFDRADGYLGVMIDDLVTRGIS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGLALGCVGTERAAFHRGKMAALAEAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG+ R+A++ LSYP+     + +I P+    S  +   ++I++ 
Sbjct: 481 AITPNEAARHGLSLNRDGQRRSAFDLLSYPEIEWPQVRAIWPELAAVSPSIAGHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ+ +    + +E  L+  D DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YAVYLERQVADVAAFRRDEGLLL-TDVDYAQVPGLSNEARGRLERHRPRTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           TPAAL +L  Y+++   K   +V
Sbjct: 600 TPAALGILAAYLRREARKRPAVV 622


>gi|146278699|ref|YP_001168858.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides ATCC 17025]
 gi|205375710|sp|A4WVY9|MNMG_RHOS5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145556940|gb|ABP71553.1| glucose inhibited division protein A [Rhodobacter sphaeroides ATCC
           17025]
          Length = 624

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 334/614 (54%), Positives = 433/614 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAGCEAAA AA++G   AL+T + S +G MSCNPAIGGLGKGHLVREID
Sbjct: 5   KQFDVIVIGGGHAGCEAAAAAARMGVRAALVTLRPSDLGVMSCNPAIGGLGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR ADAAGIQFR+LN KKGPAV+GPR QADR LYR AMQR +L Q  LDV++GE
Sbjct: 65  ALDGLMGRAADAAGIQFRLLNRKKGPAVQGPRAQADRRLYRAAMQRFLLEQPGLDVVEGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     ++   + +++ D + +    VVLT+GTFL G IHIG  + P GRMGD PS  L 
Sbjct: 125 VVDLLLDQGTATGVLLADGTRLDAKAVVLTSGTFLNGTIHIGHDRRPGGRMGDLPSIPLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
              M  +   GRLKTGTP RLDG+TI W + E Q  D   + FSF+      RQI CGIT
Sbjct: 185 QRLMDLNLSRGRLKTGTPPRLDGRTIDWTQLEMQPGDADPVMFSFLNHAPVARQISCGIT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++ GHQ+FLEPEGL+  
Sbjct: 245 STNERTHEIVRDNLHQSAMYGGHIEGVGPRYCPSIEDKIVRFADKTGHQVFLEPEGLDDH 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP E+Q  ++RTI GLE+V I++PGYAIEYDY +P+EL PTLE K + GL
Sbjct: 305 TVYPNGISTSLPAEVQESYVRTIAGLEEVKILQPGYAIEYDYFDPRELRPTLEVKAMCGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL AG+N+A      + + FSR+DSYIGVMIDDLTS+GV EP
Sbjct: 365 YFAGQINGTTGYEEAAAQGLAAGLNAALAVRGREPLHFSRSDSYIGVMIDDLTSRGVTEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G+ LGC+G  R+  F   +   +  R++L+ ++L
Sbjct: 425 YRMFTSRAEFRLSLRADNADQRLTQTGIDLGCVGPARRDAFLTKMDSLSRGRTMLQQVML 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T  +L+   I   QDG  R+A++ +++ + +   +    P+       + ++L  ++ YA
Sbjct: 485 TPTDLARLEIRISQDGTRRSAFDVMAFGEEAASAVERAVPELALLPHDIRQQLARDALYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ +EA+ +K +E   IP DFDY SL  LS+EL  KL   +P  + QA+++EGMTP
Sbjct: 545 QFIARQELEAQSLKRDEAVRIPSDFDYGSLSGLSHELTAKLLHARPATIAQAARLEGMTP 604

Query: 604 AALNLLLIYIKKNT 617
           +AL L+L  +++ +
Sbjct: 605 SALMLILSRLRRAS 618


>gi|157803242|ref|YP_001491791.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia canadensis str. McKiel]
 gi|166200608|sp|A8EXC3|MNMG_RICCK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157784505|gb|ABV73006.1| glucose-inhibited division protein A [Rickettsia canadensis str.
           McKiel]
          Length = 624

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/609 (52%), Positives = 424/609 (69%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YDVIVIGGGHAGVEAAAASARLGVPTLLITLKPGNLGEMSCNPAIGGIAKGILVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NL+++ G+V 
Sbjct: 64  DGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLNILYGKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + + ++V+ D S I C  ++LTTG+FL G+IHIG  KIPAGR+ +  S  L N+
Sbjct: 124 DIEIKSSKVKAVVLNDGSKIPCQKIILTTGSFLSGLIHIGSTKIPAGRVDEEASYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG TI + KT  Q  D+   PFS +T+ +   QI C IT+T
Sbjct: 184 LKRVGFKIARLKTGTPPRIDGLTIDYSKTVLQPGDKTPRPFSALTNIVDVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I++ GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEAIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPEE+Q + I+TIPGLEK  I+RPGYAIEYDY++P+E+  TLETKKI GL+ 
Sbjct: 304 YPNGISTSLPEEVQCKLIKTIPGLEKATILRPGYAIEYDYVDPREISITLETKKIMGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG+VAGIN+A           +R +SYIGVMIDDLT  G  EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIVAGINAALAVKNQPPFILTRANSYIGVMIDDLTIFGTKEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLT +G+ +G + ++R++ F K        R+LLK+L  T+
Sbjct: 424 MFTSRAEYRLSLRADNADLRLTELGINIGVVSKKRKEIFKKKCYNIEKTRNLLKTLSFTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             L    +   QDG  +T  +    P+F+I+    I P  ++ +S +++ L IE+ YA+Y
Sbjct: 484 SKLVKIGVQVAQDGTYKTVLDLFKIPNFTIEQAIKIFPKLQEINSNILQLLYIEAKYASY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             +Q  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPAA
Sbjct: 544 LAKQQADINLFQNEEIQLIPKNIDYFKIPSISLEIREKLSYYKPTTIGIARRIPGITPAA 603

Query: 606 LNLLLIYIK 614
           +  ++IY+K
Sbjct: 604 ITAIIIYLK 612


>gi|292571653|gb|ADE29568.1| Glucose-inhibited divisionprotein A [Rickettsia prowazekii Rp22]
          Length = 621

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/609 (52%), Positives = 424/609 (69%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D +GI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++  +V 
Sbjct: 64  DGLMGFVIDKSGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYAKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + + ++++ + S I C  VVLTTGTFL G IHIG +K+PAGR+ + PS  L N+
Sbjct: 124 DIQIKSSKVEAVILSNGSKIFCQKVVLTTGTFLSGFIHIGSIKMPAGRIYEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+T
Sbjct: 184 LKRLGFKIARLKTGTPPRIDGRTIDYSKTALQQGDQIPRPFSELTDVIDVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPEE+Q++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEEVQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINVTLETKKITGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R  SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALSVKDQAPFILTRATSYIGVMIDDLTTFGTVEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +G+K+G I E+R+K F K  +     + LL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGIKIGVITEKRKKFFTKKCKNIEKTKLLLNNLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             L+   I   QDGK +T  +    P F+++    I P  +K ++ +++ L IE+ YA+Y
Sbjct: 484 SKLAKMGIQVAQDGKYKTILDLFKIPSFNVEQAIKIFPILKKQNNNILQLLYIEAKYASY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA+
Sbjct: 544 LTRQYADINLFQSEELQLIPKNIDYFKIPSISLEIQEKLSYHKPATIGVARRISGITPAS 603

Query: 606 LNLLLIYIK 614
           +  ++IY+K
Sbjct: 604 ITAIIIYLK 612


>gi|15603935|ref|NP_220450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia prowazekii str. Madrid E]
 gi|6225445|sp|Q9ZE90|MNMG_RICPR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3860626|emb|CAA14527.1| GLUCOSE INHIBITED DIVISION PROTEIN A (gidA) [Rickettsia prowazekii]
          Length = 621

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/609 (52%), Positives = 424/609 (69%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDAL
Sbjct: 4   YGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG V D +GI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++  +V 
Sbjct: 64  DGLMGFVIDKSGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYAKVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + + ++++ + S I C  VVLTTGTFL G IHIG +K+PAGR+ + PS  L N+
Sbjct: 124 DIQIKSSKVEAVILSNGSKIFCQKVVLTTGTFLSGFIHIGSIKMPAGRIYEEPSYGLSNT 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+T
Sbjct: 184 LKRLGFKIARLKTGTPPRIDGRTIDYSKTALQQGDQIPRPFSELTDVIDVPQINCFITKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II EN+  SA+YSG I+  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    +
Sbjct: 244 TSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPEE+Q++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+ 
Sbjct: 304 YPNGISTSLPEEVQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINVTLETKKITGLYF 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+A           +R  SYIGVMIDDLT+ G +EPYR
Sbjct: 364 AGQINGTTGYEEAAGQGIIAGINAALSVKDQAPFILTRATSYIGVMIDDLTTFGTVEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT +G+K+G I E+R+K F K  +     + LL +L LT+
Sbjct: 424 MFTSRSEYRLSLRADNADLRLTELGIKIGVITEKRKKFFTKKCKNIEKTKLLLNNLSLTT 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             L+   I   QDGK +T  +    P F+++    I P  +K ++ +++ L IE+ YA+Y
Sbjct: 484 SKLAKMGIQVAQDGKYKTILDLFKIPSFNVEQAIKIFPILKKQNNNILQLLYIEAKYASY 543

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA+
Sbjct: 544 LTRQYADINLFQSEEIQLIPKNIDYFKIPSISLEIQEKLSYHKPATIGVARRISGITPAS 603

Query: 606 LNLLLIYIK 614
           +  ++IY+K
Sbjct: 604 ITAIIIYLK 612


>gi|209966079|ref|YP_002298994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodospirillum centenum SW]
 gi|209959545|gb|ACJ00182.1| glucose-inhibited division protein A [Rhodospirillum centenum SW]
          Length = 619

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 326/614 (53%), Positives = 421/614 (68%), Gaps = 1/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           RS+DVIV+GGGHAGCEAAA AA++GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 2   RSFDVIVVGGGHAGCEAAAAAARMGARTALLTHRIETIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLM RV D  GIQFRVLN  KGPAVRGPR QADR LYR AMQ  + +Q  LD+I   
Sbjct: 62  ALDGLMARVIDQGGIQFRVLNRSKGPAVRGPRAQADRRLYREAMQAALRAQPGLDLIAAA 121

Query: 124 VAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V     +       +   D   IR   VVLTTGTFLRG+IHIG+ +IPAGR+G++P+  L
Sbjct: 122 VEDLLLDAAGACCGVRTADGEEIRAGAVVLTTGTFLRGLIHIGERRIPAGRVGEAPALGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            ++  +  F  GRLKTGTPARLDG++I W   E Q  D+   PFS +T++IT  Q+ C I
Sbjct: 182 SDTLARLGFPLGRLKTGTPARLDGRSIDWAGLESQPGDDPPPPFSTLTERITTPQVACAI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T    H +I  N+  + IYSG I+S GPRYCPSIEDK+VRF ++  HQIFLEPEGL+ 
Sbjct: 242 TWTTPAVHALIRANLHRAPIYSGQIESTGPRYCPSIEDKVVRFADKERHQIFLEPEGLDD 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D VYPNGIST+LPEE+Q + +  IPGLE+  ++RPGYAIEYD+++P+EL  TLETK++  
Sbjct: 302 DTVYPNGISTSLPEEVQREMLAAIPGLERAVMLRPGYAIEYDFVDPRELTATLETKRLPR 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQGL+AG+N+A      +     R + YIGV+IDDL ++G  E
Sbjct: 362 LFLAGQINGTTGYEEAAAQGLMAGVNAALAVAGGEPFVLDRAEGYIGVLIDDLITRGTTE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP G+ +G +G RR + F +        R+L  SL 
Sbjct: 422 PYRMFTSRAEYRLLLRADNADQRLTPRGLSVGVVGSRRAEAFQQKADALAAARALATSLA 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T   L+   I   +DG  RT  + L YP+  I  L ++ P+     + + E+++I+  Y
Sbjct: 482 ATPNELARHGIHVNRDGVRRTVLDLLRYPEVDIARLAAVWPELAALPAAIAEQVEIDGKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  + +  + +E   +P D D  ++ +LS E+++KL  ++P  L  A++I GMT
Sbjct: 542 AGYLERQEADIRAFRKDEALGLPADLDPDAIASLSAEIRQKLRQVRPATLGAAARIPGMT 601

Query: 603 PAALNLLLIYIKKN 616
           PAAL  LL ++K+ 
Sbjct: 602 PAALTALLRHVKRR 615


>gi|255263837|ref|ZP_05343179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thalassiobium sp. R2A62]
 gi|255106172|gb|EET48846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thalassiobium sp. R2A62]
          Length = 620

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/612 (51%), Positives = 425/612 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+V+GGGHAGC+AA+ +A+ GA T L+T K + IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQFDVVVVGGGHAGCDAASASARAGARTLLVTLKLADIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M  E+ +Q+NL++ + E
Sbjct: 62  ALGGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRETMLCEMKAQQNLELCEAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    +   ++ + + D ++I   +VVLT GTFLRG IHIG      GRMGD+P+  L 
Sbjct: 122 VAALEIDAGEVTGVKLADGTVISAYSVVLTAGTFLRGKIHIGPESRSGGRMGDAPAIKLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                  F+ GRLKTGTP RLDGKTI WD  ++Q  D     FSF T      QI CG+T
Sbjct: 182 EQIDSLGFELGRLKTGTPPRLDGKTINWDGLDRQDGDNEPSFFSFSTRSTDTPQISCGVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N+  SA+Y G I   GPRYCPSIEDK+VRF E++ HQIFLEPE L+ +
Sbjct: 242 HTNEQTHDIIQKNLDKSAMYGGQIDGVGPRYCPSIEDKVVRFAEKSSHQIFLEPESLSDN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LP ++Q+ ++ +I GLEK  I++ GYAIEYDY++P+ L  TLET+++ GL
Sbjct: 302 VIYPNGISTSLPLDVQYDYVHSIFGLEKAVILQAGYAIEYDYLDPRGLRSTLETREMPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+NSA ++   +   F R +SYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNSALRAQNKEQQTFDRVNSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR DNAD RL+P  + LG +GER+   F +        +S+L    +
Sbjct: 422 YRMFTSRAEFRLTLRADNADQRLSPRAIHLGLLGERQAASFLEKQDALARAKSILDEATV 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T++ L S  +    DG+ RTA+  LS P+ S+ ++  + P   +    +  ++  ++ Y 
Sbjct: 482 TARQLHSVGVDINPDGRRRTAFSALSIPNVSLDHVRLVVPALSRVKEEIQVQISKDALYF 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQM +A  ++ E+K  IP    ++ +  LSNEL  KL   KP NL QA +IEGMTP
Sbjct: 542 QYVERQMRDALALEKEKKTKIPDTMIFAGMNGLSNELAVKLDRAKPENLGQAGRIEGMTP 601

Query: 604 AALNLLLIYIKK 615
           AAL L+L  +++
Sbjct: 602 AALTLILSKLRQ 613


>gi|159045995|ref|YP_001534789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dinoroseobacter shibae DFL 12]
 gi|189039340|sp|A8LPC3|MNMG_DINSH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157913755|gb|ABV95188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dinoroseobacter shibae DFL 12]
          Length = 619

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 324/603 (53%), Positives = 417/603 (69%), Gaps = 3/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +++DVIVIGGGHAG EAAA AA+LG   ALIT + S IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKQQAFDVIVIGGGHAGTEAAAAAARLGVQVALITLERSGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR+Q+DR++YR  M  E+ S  NL ++
Sbjct: 61  EIDAMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRSQSDRDVYRSEMLAEMESLPNLRIL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEVA   T    I  + + D S +    VV+TTGTFLRG+IHIG      GRMG +PS 
Sbjct: 121 EGEVADLITSGTRIEGVCLADGSEVTARAVVVTTGTFLRGIIHIGNRSFQGGRMGAAPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L   F  F    GRLKTGTP RLD ++I WDK E Q  DE    FSF++     RQ+ C
Sbjct: 181 RLAERFDSFGLPLGRLKTGTPPRLDKRSIAWDKLEPQPGDEDPTLFSFLSAGPHLRQVHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  SA+Y G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 241 AVTHTNERTHEIIRKNLSRSAMYGGSIEGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LPE++Q  ++R+I GLE   I +PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DSTTIYPNGISTSLPEDVQEAYVRSISGLENAKITQPGYAIEYDYVDPRALDAALRVKGF 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLVAG+N+A +         SR  SYIGVMIDDL ++GV
Sbjct: 361 DGLYLAGQINGTTGYEEAAAQGLVAGLNAALEGK--GKFLPSRMTSYIGVMIDDLITQGV 418

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R+ +F K +   +     LKS
Sbjct: 419 AEPYRMFTSRAEYRLSLRCDNADQRLTPEGLVLGCVGKERRIKFEKKMGLLDETLKKLKS 478

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +T K  +   I   +DG+ R+  + LS  + S ++L +  P+ +  S+ + ++ +IE+
Sbjct: 479 FEVTPKQANEAGIRVNEDGRRRSGLDLLSLSNVSYESLAATWPELQA-STEIAKQAKIEA 537

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +   +K +E+   P  FD+S L  LSNELK KL+ ++P  L QA++IEG
Sbjct: 538 TYANYIERQQRDVMALKKDEEIEFPPRFDFSGLSGLSNELKSKLTAVRPSTLGQAARIEG 597

Query: 601 MTP 603
           MTP
Sbjct: 598 MTP 600


>gi|262277800|ref|ZP_06055593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [alpha proteobacterium HIMB114]
 gi|262224903|gb|EEY75362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [alpha proteobacterium HIMB114]
          Length = 619

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 317/614 (51%), Positives = 418/614 (68%), Gaps = 1/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAAA +A++  +TAL+T   ++IG MSCNPAIGGLGKGHLVREIDA 
Sbjct: 4   FDVVVIGAGHAGCEAAAASARMKVNTALVTTNENSIGEMSCNPAIGGLGKGHLVREIDAF 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+M +VADA+GIQFR+LN  +GPAVRGPRTQ+DR+LY+  M+  ++S  NL +    V 
Sbjct: 64  DGVMPKVADASGIQFRLLNRSRGPAVRGPRTQSDRKLYKKYMKECLISHCNLSIFYDPVI 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F   +N I  ++++    +R   +VLTTGTFL GVIHIG    P GR G+ P+  L   
Sbjct: 124 QFIFNENEIVGLILKSGKELRAKKIVLTTGTFLNGVIHIGDEMKPGGRHGEDPTTGLSEQ 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             KF+ +  RLKTGTP RLDG+TI ++  E+Q AD+    FS  + +I   Q+ C +T T
Sbjct: 184 LKKFNLNLSRLKTGTPPRLDGRTINFEILEEQKADDDPYFFSVDSKQINVDQVSCFMTYT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H+II +N+K SA+YSG+IKS GPRYCPSIEDKIV+F +++ HQIFLEPEGL+   +
Sbjct: 244 NDEVHKIIEKNLKRSAMYSGNIKSVGPRYCPSIEDKIVKFKDKSRHQIFLEPEGLDDHTI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP + Q + +  I GL  V +IRPGYAIEYDY++P+EL  TLE KKI  LFL
Sbjct: 304 YPNGISTSLPADAQEEILFKINGLSNVKMIRPGYAIEYDYVDPRELNATLELKKIKSLFL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN+A +S         R+ +YIGVMIDDL +KGV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLIAGINAALQSKNKKPFILDRSQAYIGVMIDDLVTKGVAEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR++LR DNAD RL+ I   L  + E R   F K ++  N L+  L S   T 
Sbjct: 424 MFTSRAEYRLTLRADNADLRLSSIAKDLEILSESRLLNFEKKLENINKLKVQLSSRSFTP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  I   +DG  R   E L Y   +   L  I      +   VIE+++I++ Y+ Y
Sbjct: 484 NEAVKYGIKISKDGVKRNGLELLRYKGVTFDKLKPIF-GLGDYDRDVIEQIEIDNHYSGY 542

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             +Q+ + +  K +E   IP++ DYS++  LSNE+++KL +++P    QAS+IEG+TPAA
Sbjct: 543 YAKQVDDIEIFKKDENMKIPENIDYSAISGLSNEIRQKLELIRPKTFGQASRIEGITPAA 602

Query: 606 LNLLLIYIKKNTVK 619
           +NLLL Y K+   K
Sbjct: 603 INLLLTYSKRYNFK 616


>gi|77464807|ref|YP_354311.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides 2.4.1]
 gi|123590765|sp|Q3IYH4|MNMG_RHOS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77389225|gb|ABA80410.1| Glucose-inhibited division protein, A family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 626

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 327/612 (53%), Positives = 421/612 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAGCEAAA AA++G   AL T + S +G MSCNPAIGGLGKGHLVREID
Sbjct: 7   KHFDVVVIGGGHAGCEAAAAAARMGVQVALFTLRKSGLGVMSCNPAIGGLGKGHLVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGR AD AGIQFR+LN KKGPAV+GPR QADR LYR A+QR + +Q  L VI+GE
Sbjct: 67  ALDGIMGRAADEAGIQFRLLNRKKGPAVQGPRAQADRRLYREAVQRLLAAQPGLTVIEGE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  + + D + +    V+LT+GTFL G+IHIG  + P GRMGD PS  L 
Sbjct: 127 VVDLQVNGGRVQGVSLADGTSVWAGRVILTSGTFLNGIIHIGDQRRPGGRMGDDPSQRLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG+TI W + E Q  DE  + FSF+      RQI CGIT
Sbjct: 187 AVLGELSLARGRLKTGTPPRLDGRTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D
Sbjct: 247 HTNARTHQIVRDNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKEAHQVFLEPEGLDDD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP E+Q  ++RTI GLE V I++PGYAIEYDY +P+EL PTLE K + GL
Sbjct: 307 TVYPNGISTSLPAEVQEAYVRTIAGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL AG+N+A    + + + FSR+ SY+GVMIDDLTS+GV EP
Sbjct: 367 YFAGQINGTTGYEEAAAQGLAAGLNAALSIREREPLHFSRSGSYLGVMIDDLTSRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F +  +     R+LL+    
Sbjct: 427 YRMFTSRAEFRLSLRADNADQRLTPIGLDLGCVSDARRESFNRKRELLEKGRALLEGSSF 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I   QDG  RTA+  +++ + +   +             + ++L  +  YA
Sbjct: 487 TPSQLNELGIQVSQDGMRRTAFAVMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYA 546

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  EA  +K +E   IP DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP
Sbjct: 547 QFILRQEEEAAALKRDEAIRIPADFDYAPLSGLSSELKSKLMRARPSTIAQAAQLEGMTP 606

Query: 604 AALNLLLIYIKK 615
           +AL L+L  +++
Sbjct: 607 SALTLILARLRR 618


>gi|304320460|ref|YP_003854103.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
 gi|303299362|gb|ADM08961.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 333/609 (54%), Positives = 419/609 (68%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAAA AA+ GA TALITHK ++IG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 7   YDVIVVGGGHAGTEAAAAAARSGAQTALITHKAASIGEMSCNPAIGGLGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGR AD  GIQFR+LN  KGPAVRGPRTQADR  YR A+Q  +   E++ +I+ EVA
Sbjct: 67  DGLMGRAADRGGIQFRMLNRSKGPAVRGPRTQADRFHYRTAVQDLLAELEDISLIEAEVA 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +V+ D   +  ++VVLTTGTFLRGVIH G  +IPAGR GD  + +L   
Sbjct: 127 DLIVSNGHVMGVVLSDGREVSATSVVLTTGTFLRGVIHRGTERIPAGRYGDQAATALGER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGTPARL   +I W + E Q ADE  +PFSF+T+ +   QI CGIT T
Sbjct: 187 LEALALPLGRLKTGTPARLVKTSIDWSRLETQEADEAPVPFSFLTETLPLPQIACGITAT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETHRII +N+  SA+YSG I S GPRYCPSIEDKIVRF +R+ HQIFLEPEGL+   V
Sbjct: 247 TAETHRIIADNLHQSAVYSGAIGSKGPRYCPSIEDKIVRFPDRSSHQIFLEPEGLDEPWV 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP+++Q   IR+IPGLE   I R GYAIEYDY++P+ L  +LE + + GLFL
Sbjct: 307 YPNGISTSLPDQVQEALIRSIPGLEGAEIARYGYAIEYDYVDPRALSHSLELRALPGLFL 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N++R++  L  +   R ++YIGV+IDDL + GV EPYR
Sbjct: 367 AGQINGTTGYEEAGAQGLIAGLNASRRARGLSPVWLERREAYIGVLIDDLVTHGVTEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLTP G     +G  R++ F    +     RS+L    +T 
Sbjct: 427 MFTSRAEYRLSLRADNADLRLTPRGQTWDLVGPARREMFHMKQERVARARSILTETSVTP 486

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           +      IS  +DG+ R   + L+ P    + L S+ PD     + +   L+ ++ Y+ Y
Sbjct: 487 QEAEEAGISVNKDGRRRRLLDLLALPIVEFEQLSSLHPDIPSIGADLRPILEADALYSGY 546

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  E   +K EE  +IP DF Y  +P LS EL+EKL  ++P +L QA++IEG+TPAA
Sbjct: 547 LDRQEAEIVALKKEEDTVIPADFRYDLVPGLSAELREKLDRIRPHHLGQAARIEGVTPAA 606

Query: 606 LNLLLIYIK 614
           L LLL+ +K
Sbjct: 607 LALLLVTLK 615


>gi|332559703|ref|ZP_08414025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides WS8N]
 gi|332277415|gb|EGJ22730.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides WS8N]
          Length = 597

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/589 (52%), Positives = 400/589 (67%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G   ALIT + S +G MSCNPAIGGLGKGHLVREIDALDG+MGR AD AGIQFR+LN K
Sbjct: 1   MGVQVALITLRKSGLGVMSCNPAIGGLGKGHLVREIDALDGIMGRAADEAGIQFRLLNRK 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR QADR LYR A+QR + +Q  L VI+GEV         +  + + D + + 
Sbjct: 61  KGPAVQGPRAQADRRLYREAVQRLLAAQPGLTVIEGEVVDLQVNGGRVQGVSLADGTSVW 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LT+GTFL G+IHIG  + P GRMGD PS  L     +     GRLKTGTP RLDG
Sbjct: 121 AGRVILTSGTFLNGIIHIGDQRRPGGRMGDDPSQRLAAVLGELSLARGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI W + E Q  DE  + FSF+      RQI CGIT TN  TH+I+ +N+  SA+Y G 
Sbjct: 181 RTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGITHTNARTHQIVRDNLSRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D VYPNGIST+LP E+Q  ++RTI
Sbjct: 241 IEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDDTVYPNGISTSLPAEVQEAYVRTI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE V I++PGYAIEYDY +P+EL PTLE K + GL+ AGQINGTTGYEEAAAQGL AG
Sbjct: 301 AGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGLYFAGQINGTTGYEEAAAQGLAAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A      + + FSR+ SY+GVMIDDLTS+GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAALSIRDREPLHFSRSGSYLGVMIDDLTSRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TPIG+ LGC+ + R++ F +  +     R+LL+    T   L+   I   QDG  RTA+ 
Sbjct: 421 TPIGLDLGCVSDARRESFNRKREMLEKGRALLEGSSFTPSKLNELGIQVSQDGMRRTAFA 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            +++ + +   +             + ++L  +  YA +  RQ  EA  +K +E   IP 
Sbjct: 481 VMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYAQFILRQEEEAAALKRDEAIRIPA 540

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP+AL L+L  +++
Sbjct: 541 DFDYAPLSGLSSELKSKLMRARPSTIAQAAQLEGMTPSALTLILARLRR 589


>gi|221640726|ref|YP_002526988.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodobacter sphaeroides KD131]
 gi|221161507|gb|ACM02487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Rhodobacter sphaeroides KD131]
          Length = 597

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 314/593 (52%), Positives = 404/593 (68%), Gaps = 6/593 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G   ALIT + S +G MSCNPAIGGLGKGHLVREIDALDG+MGR AD AGIQFR+LN K
Sbjct: 1   MGVRVALITLRMSGLGVMSCNPAIGGLGKGHLVREIDALDGIMGRAADEAGIQFRLLNRK 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR QADR LYR A+QR +  Q  L V++GEV         +  + + D + + 
Sbjct: 61  KGPAVQGPRAQADRRLYREAVQRLLAEQPGLTVVEGEVVDLQVIGGRVQGVSLADGTSVG 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LT+GTFL GVIHIG  + P GRMGD PS  L     +     GRLKTGTP RLDG
Sbjct: 121 AGRVILTSGTFLNGVIHIGDQRRPGGRMGDDPSQRLAAVLGELSLARGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI W + E Q  DE  + FSF+      RQI CGIT TN  TH+I+ +N+  SA+Y G 
Sbjct: 181 RTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGITHTNARTHQIVRDNLSRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D VYPNGIST+LP E+Q  ++ TI
Sbjct: 241 IEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDDTVYPNGISTSLPAEVQEAYVHTI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE V I++PGYAIEYDY +P+EL PTLE K ++GL+ AGQINGTTGYEEAAAQGL AG
Sbjct: 301 AGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALAGLYFAGQINGTTGYEEAAAQGLAAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A    + + I FSR+ SY+GVMIDDLT++GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAALSIREREPIYFSRSGSYLGVMIDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TPIG+ LGC+ E R+  F++  +     + LL+    T   L+   I   QDG  RTA+ 
Sbjct: 421 TPIGLDLGCVSEARRDSFSRKREMLEKGKGLLECSTFTPSQLNDLGIKVSQDGVRRTAFA 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
            ++Y D   +   ++      +S L   + ++L  +  YA +  RQ  EA  +K +E   
Sbjct: 481 VMAYGD---EAAVAVEKGVEGYSDLPEEIRQQLAKDGIYAQFILRQEEEAAALKRDEAIR 537

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           IP +FDY+ L  LS+ELK KL   KP  + QA+++EGMTP+AL L+L  ++++
Sbjct: 538 IPAEFDYAPLSGLSSELKAKLMRAKPSTIAQAAQLEGMTPSALTLILARLRRS 590


>gi|83594954|ref|YP_428706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodospirillum rubrum ATCC 11170]
 gi|123525453|sp|Q2RN76|MNMG_RHORT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83577868|gb|ABC24419.1| Glucose-inhibited division protein A subfamily [Rhodospirillum
           rubrum ATCC 11170]
          Length = 629

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 322/623 (51%), Positives = 410/623 (65%), Gaps = 14/623 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIV+GGGHAG EAAA AA+LGA T L THK  T+G+MSCNPAIGGL KGHLVRE
Sbjct: 1   MTNHWDVIVVGGGHAGTEAAAAAARLGAKTLLATHKLETVGTMSCNPAIGGLAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR  D  GIQFR+LN  KGPAVRGPR QADR LY  A++  +  Q  L    
Sbjct: 61  IDALDGVMGRAIDRGGIQFRILNRSKGPAVRGPRAQADRALYAQAVRAILADQPGL---- 116

Query: 122 GEVAGFNTEKNII------SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             +A    E  +I      + ++  +  + R   VVLTTGTFLRGVIHIG    PAGR+G
Sbjct: 117 -TLAALAIEDLLIGNDGRCAGVIDAEGGVHRAGAVVLTTGTFLRGVIHIGTQTTPAGRIG 175

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           ++P+  L  +  +  F  GRLKTGTP RLDG+TI W   E Q  DE   PFSF+T  IT 
Sbjct: 176 EAPALGLSATLARLGFPLGRLKTGTPPRLDGRTIAWATLESQPGDEPPPPFSFLTTAITT 235

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            QI C IT T  ETHR+I EN+  + +YSG I+  GPRYCPSIEDK+VRF +R+ HQIFL
Sbjct: 236 PQISCAITETTAETHRVIRENLHRAPLYSGQIQGVGPRYCPSIEDKVVRFADRDRHQIFL 295

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+   VYPNGIST+LP ++Q   + TIPGLEK  ++RPGYAIEYD+++P+ L PTL
Sbjct: 296 EPEGLDDPTVYPNGISTSLPIDVQLALLATIPGLEKAEMMRPGYAIEYDFVDPRCLGPTL 355

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR---KSNKLDCICFSRTDSYIGVMI 412
           ET ++ GLFLAGQINGTTGYEEAAAQGL+AG+N+AR      +   I F R + Y+GV++
Sbjct: 356 ETDRLPGLFLAGQINGTTGYEEAAAQGLIAGLNAARVAGAGERAAPITFDRAEGYLGVLV 415

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT  G+ LGC+G  R   F        
Sbjct: 416 DDLITLGTTEPYRMFTSRAEYRLLLRADNADLRLTAKGIALGCVGAARTAAFEDKRAALT 475

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             R+++  L LT  +L+   I+  QDG+ RT  + L + D     L ++ P+       V
Sbjct: 476 AARTMIDGLALTPPDLARRGIAVNQDGQRRTPLDLLCHADIDWARLVALWPELGAIRPDV 535

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+L+I + YA Y  R   +    + +E  ++P D  Y  L  LS EL+ KL++ +P  L
Sbjct: 536 AEQLEIGARYAGYLERMHGDVAAFRRDEALVLPADLAYDGLANLSAELRGKLTLARPATL 595

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
             A++I GMTPAAL  LL ++K+
Sbjct: 596 GAAARIPGMTPAALTALLRHVKR 618


>gi|58039526|ref|YP_191490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconobacter oxydans 621H]
 gi|81170545|sp|Q5FS12|MNMG_GLUOX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58001940|gb|AAW60834.1| Glucose inhibited division protein A [Gluconobacter oxydans 621H]
          Length = 618

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/613 (48%), Positives = 395/613 (64%), Gaps = 5/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAAA +A+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDAL
Sbjct: 4   FDVIVIGGGHAGCEAAAASARFGARTLLLTHRLETIGAMSCNPAIGGIGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG+ AD AGI F++LN  KGPAV GPR QADR LYR A+Q  + +  NL +++G   
Sbjct: 64  DGLMGKAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRAAIQDLLAATPNLTILEGAAG 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ ++ +D    RC  VVLTTGTFLRGVIH+G  +  AGR+G++P+  L   
Sbjct: 124 DLIEENGRITGVICEDGREFRCGAVVLTTGTFLRGVIHVGHTQTEAGRIGEAPAKRLGER 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGTP RL   +I WD       D     FS MT  I N Q+ C I+ T
Sbjct: 184 LYALGLQMGRLKTGTPPRLARDSIDWDNLPADPGDAEPEAFSPMTTAIINPQVVCRISHT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL----N 301
             ETHRII EN+  SA+Y G I   GPRYCPSIEDK+VRF ER  HQ+FLEPE L     
Sbjct: 244 TAETHRIINENLHRSAMYGGAIAGRGPRYCPSIEDKVVRFAERTSHQVFLEPEALPGNPG 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D+VYPNGIST+LP ++Q   I T+PGLE   I+  GYA+EYDY++P+EL P+L+ +++ 
Sbjct: 304 GDLVYPNGISTSLPADVQAAMIATMPGLENARIVTAGYAVEYDYVDPRELLPSLQLRRLP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGL+AG+N+AR +   + +   R+D+Y+GVMIDDLT  G+ 
Sbjct: 364 GLYLAGQINGTTGYEEAGAQGLLAGLNAARATAGNEPLTLDRSDAYLGVMIDDLTLHGIS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLTP G+  GC+   R+  F     E +   +     
Sbjct: 424 EPYRMFTSRAEYRLTLRADNADLRLTPKGIAAGCVLPEREAAFTAQKAELDAAMARAAET 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               + L         DG+ RT  + L+  +     L ++ P   +    V   ++ E+ 
Sbjct: 484 TFLPQTLRDVGFEVSLDGRRRTVLDVLAS-NGDHTKLDTLAPWFAELPLRVRRHVETEAR 542

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E +++  E    +P D DY+++  LS+E++E+ S  +P +   A ++ G+
Sbjct: 543 YDGYLHRQDREIRQLASESAIALPADLDYTAIGGLSSEMRERFSQARPTSFAAAQRVRGV 602

Query: 602 TPAALNLLLIYIK 614
           TPAAL  LL +++
Sbjct: 603 TPAALVALLAHVR 615


>gi|307297009|ref|ZP_07576825.1| glucose inhibited division protein A [Sphingobium chlorophenolicum
           L-1]
 gi|306877535|gb|EFN08763.1| glucose inhibited division protein A [Sphingobium chlorophenolicum
           L-1]
          Length = 616

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/614 (48%), Positives = 407/614 (66%), Gaps = 1/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAGCEAA+ AA+ GAS AL+T + +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SYDVIVVGGGHAGCEAASAAARKGASVALLTFEKATVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL+GR ADAA I +R+LN  KG AV+GPR QADR+ YR  + R + +Q  LD+I+GE 
Sbjct: 64  LDGLIGRAADAAAIHYRMLNSSKGAAVQGPRIQADRKRYRAEIHRLLDAQTGLDIIEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A     ++ I+ + + D   +   TVVL TGTFL G +  G+     GR G+  + +L  
Sbjct: 124 AQLLLSQDKIAGLALADGRTLSAPTVVLATGTFLGGKLFRGEETTIGGRTGERAATTLGV 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                D   GRLKTGTP RLDG+TI W + E+Q +D      S ++      Q+ C ITR
Sbjct: 184 QLRALDLPIGRLKTGTPPRLDGRTIDWARLEEQPSDGGSWTMSALSPARILPQLSCAITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL T++
Sbjct: 244 TNDRTHAIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVIRFGDRDGHQIFLEPEGLETNL 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + IR++ GLE   I+ PGYA+EYD+I+P+ L  TLE + I GLF
Sbjct: 304 VYPNGISTSLPADVQREMIRSMAGLEAAEIVVPGYAVEYDHIDPRALDATLEVRAIRGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGLVAG+N+A  +   + +   R  SYIGVMIDDL  +GV EPY
Sbjct: 364 CAGQINGTTGYEEAAAQGLVAGVNAAAYARGEEPLILDRASSYIGVMIDDLVLQGVTEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM T+RAEYR+ LR DNA  RL PIG +   +   R   +A    E       L    L+
Sbjct: 424 RMLTARAEYRLRLRADNAGTRLAPIGHRHAILNAERIAHYAARNAERGRAEEELNR-SLS 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  ++    + +QDG  R+ +E+  +P+ S + LF++ P     S  V + +  ++ YA 
Sbjct: 483 ATEMARAGAAVRQDGARRSLFEWARFPEVSRELLFTLAPALSNISPDVRDEILEDAHYAP 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E  E++  E+ +IP DFD++S+  LS E+ E+L++ +P  L  A +I G+TPA
Sbjct: 543 YLDRQDTEIAEMRRNERVVIPADFDFASVGGLSTEMIERLNMARPDTLAAAGRIRGITPA 602

Query: 605 ALNLLLIYIKKNTV 618
           AL  +L++I++   
Sbjct: 603 ALAAVLVHIRRRAA 616


>gi|330991276|ref|ZP_08315227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Gluconacetobacter sp. SXCC-1]
 gi|329761295|gb|EGG77788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Gluconacetobacter sp. SXCC-1]
          Length = 623

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/623 (50%), Positives = 408/623 (65%), Gaps = 8/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R+YDVIV+GGGHAGCEAAA AA+ GA T L+TH+  TIG MSCNPAIGG+GKGHLVRE
Sbjct: 1   MKRAYDVIVVGGGHAGCEAAAAAARAGARTLLLTHRFDTIGVMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMG  AD AGI F++LN  KGPAV GPR QADR LYRLA+Q  +   E LD+++
Sbjct: 61  IDALDGLMGIAADRAGIHFKLLNRSKGPAVHGPRAQADRTLYRLAIQDLLARTEGLDIVE 120

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G       N +  +   +V +D        VVL TGTFLRG IHIG    PAGR+GD P+
Sbjct: 121 GAAGDLLVNAQGGV-EGVVCEDGRSFASGAVVLATGTFLRGTIHIGHESEPAGRVGDRPA 179

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
           N+L           GRLKTGTPAR+   +I WD   +   D     FS MTD ITN  I 
Sbjct: 180 NALGRRLAALGLRMGRLKTGTPARIARDSIEWDSLAEDRGDAVPEAFSRMTDAITNPMIS 239

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T   TH II EN++ SA+Y G I   GPRYCPSIEDK+VRF +R  HQIFLEPEG
Sbjct: 240 CRITATTPRTHEIIRENLQLSALYGGVISGRGPRYCPSIEDKVVRFAQRESHQIFLEPEG 299

Query: 300 LNTD----VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           L ++    +VYPNGIST+LPE +Q + +R+IPGLE   ++RPGYA+EYDY++P+EL PTL
Sbjct: 300 LPSNPDGALVYPNGISTSLPEHVQLEMLRSIPGLENCRMVRPGYAVEYDYVDPRELAPTL 359

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E K + GLFLAGQ+NGTTGYEEA AQGL+AGIN+AR +   + +  +R  +YIGVMIDDL
Sbjct: 360 ELKNLPGLFLAGQVNGTTGYEEAGAQGLIAGINAARHAAGQEGVTLARGQAYIGVMIDDL 419

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T++GV EPYRMFTSRAEYR++LR DNAD RLTP+G++ GC+G  R  R        +   
Sbjct: 420 TTQGVSEPYRMFTSRAEYRLTLRADNADLRLTPLGLEWGCVGSARAARLLSDRTAIDAAM 479

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +   S   T   L    ++   DG+ R+  + L+  D +   +  + P     S  V + 
Sbjct: 480 ARASSETCTPDALRREGVNVSADGRARSLMDVLAT-DATPDVIARVAPWFADLSPRVAQH 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L  E+ Y+ Y  RQ  E +++  E + ++P D DY  +  LS E++E+L+ ++P     A
Sbjct: 539 LMTEARYSGYIARQEREIRQLASESRIVLPADLDYHQIGGLSTEMQERLAQVRPVTFGAA 598

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+TP+AL  LL +++   V
Sbjct: 599 QRIPGITPSALVALLAHVRHRPV 621


>gi|58617395|ref|YP_196594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Gardel]
 gi|81170538|sp|Q5FFY7|MNMG_EHRRG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58417007|emb|CAI28120.1| Glucose inhibited division protein A [Ehrlichia ruminantium str.
           Gardel]
          Length = 625

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 301/617 (48%), Positives = 412/617 (66%), Gaps = 7/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGH+GCEAAA AA++GA T LITH  STIG MSCNPAIGG+ KG +VRE+D
Sbjct: 2   KKYDVVVIGGGHSGCEAAAAAARIGAKTLLITHSISTIGEMSCNPAIGGIAKGIVVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+V D A I   +LN  KGPAV GPR QADR+LYR AMQ  IL+  NL V++  
Sbjct: 62  ALDGLMGKVIDNASINSTILNRSKGPAVWGPRAQADRDLYRHAMQNSILNYPNLTVLEAS 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V  F T  N     I+S++  D  +I    ++LTTGTFL+G IHIG    PAGR  +  S
Sbjct: 122 VENFTTTDNQELPTINSVITADQEVIYTKKLILTTGTFLQGTIHIGSYNTPAGRFNEQSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +   ++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+M++ I   QI 
Sbjct: 182 VGLAKTLASYNFKLGRLRTGTPPRLDRNSINFSGLQEQKGDTPPSPFSYMSESINLPQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           C +T TN +TH +I  N+ H A  S  +K    PRYCPSIE+K+ RF ERN HQ+FLEPE
Sbjct: 242 CYLTATNTKTHEVIKNNL-HKAAASNLLKEIKAPRYCPSIEEKVRRFSERNSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN++++YPNGI+T+ P ++Q   ++TI GLE V I+R GY++EY++I+P+EL+ TLETK
Sbjct: 301 GLNSEIIYPNGITTSSPLDVQQTMLKTILGLENVKIVRSGYSVEYNFIDPRELYHTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-KLDCICFSRTDSYIGVMIDDLTS 417
           KI GL+ AGQINGTTGYEEAA QG++AGIN+A   N   +     R D+YIGVMIDDL +
Sbjct: 361 KIRGLYCAGQINGTTGYEEAAGQGIIAGINAALSLNSNYEPFILKRNDAYIGVMIDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R     +  +E   L ++
Sbjct: 421 LGTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKISAVSYQRYLTLNRKKEEVTKLTNI 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           LK  V+    LS   +   QDG+ R+A++ LS P+ ++  L  IC   + + +  I++++
Sbjct: 481 LKETVILPSQLSQHGVCISQDGRKRSAFDLLSNPNINMNILSKICNQIKNYHANTIQQVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  +Q ++ +    EE   IP D ++S +  LS E++EKL  +KP ++  A +
Sbjct: 541 IEAKYAPYFIKQELDIQSFIAEENTHIPHDIEFSQIHGLSTEIQEKLQYMKPPSIGSARR 600

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAA+  +L Y++
Sbjct: 601 IPGVTPAAITNILFYLR 617


>gi|77920731|ref|YP_358546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pelobacter carbinolicus DSM 2380]
 gi|123573042|sp|Q39ZT1|MNMG_PELCD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77546814|gb|ABA90376.1| glucose inhibited division protein GidA [Pelobacter carbinolicus
           DSM 2380]
          Length = 619

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/615 (49%), Positives = 401/615 (65%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y+VIV+G GHAGCEAA  +A++G +T L+      +  MSCNPAIGGL KGHLVREID
Sbjct: 6   KDYEVIVVGAGHAGCEAALASARMGCNTLLLNLHLDAVAQMSCNPAIGGLAKGHLVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M RV DA GIQFR LN KKGPAVR  R QADR  Y+  M++ + +Q  LD+ QG 
Sbjct: 66  ALGGEMARVIDATGIQFRTLNTKKGPAVRATRAQADRRAYQFHMKQVVENQPALDLKQGS 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    + + +S +   D       TVVLTTGTF+RG+IH+G    P GR G+ PS  L 
Sbjct: 126 VSRLILQGDKVSGVETTDGLRFFGQTVVLTTGTFMRGLIHVGLQHFPGGRAGEPPSLGLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +     GRLKTGTPARLDG TI +D+   Q  D    PFS  T+KIT+ Q+ C IT
Sbjct: 186 DHLAELGLRVGRLKTGTPARLDGNTIDYDRLVPQHGDVPPKPFSADTEKITSPQVPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II + +  S +Y G I+  GPRYCPSIEDKI+RF +++ H +FLEPEGL T 
Sbjct: 246 ATNAHTHDIIRQGLDRSPLYQGVIEGVGPRYCPSIEDKIMRFPDKDSHHVFLEPEGLGTR 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q  F+RTIPGLE V I+RPGYAIEYD+++P +L P+LETKKI  L
Sbjct: 306 EVYPNGVSTSLPPDVQLAFLRTIPGLEHVEIMRPGYAIEYDFVDPIQLKPSLETKKIRNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGT+GYEEAAAQGL+AGIN+         +   R  +YIGVMIDDL + G  EP
Sbjct: 366 FLAGQINGTSGYEEAAAQGLMAGINAVHALRDCPPVVLGRDQAYIGVMIDDLVTCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R +RF + + +    R  L+   L
Sbjct: 426 YRMFTSRAEYRLLLREDNADQRLTPLGHQVGLVSDERWQRFTRKMDKIVEGRDFLEKRRL 485

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIESS 541
           +S +  +      +D K   +  + L  PD +I++L   C D        V E+LQIE  
Sbjct: 486 SSSDKEAIGRLGLEDLKNGLSLVQILRRPDINIEDLV-FCDDRLADIPENVREQLQIEIK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ    +  +  E+  IP D DYS +  LS E++EKL  ++P NL QA++I G+
Sbjct: 545 YEGYIARQYEMVERFRRSEQIAIPSDMDYSPIEGLSIEVREKLQKVRPQNLGQAARIPGV 604

Query: 602 TPAALNLLLIYIKKN 616
           TPAA+ +L + +++N
Sbjct: 605 TPAAVAILSVLLRRN 619


>gi|149178844|ref|ZP_01857424.1| glucose-inhibited division protein A [Planctomyces maris DSM 8797]
 gi|148842319|gb|EDL56702.1| glucose-inhibited division protein A [Planctomyces maris DSM 8797]
          Length = 610

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/618 (47%), Positives = 404/618 (65%), Gaps = 18/618 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YD++V+G GHAGCEAA  +A+LGA TAL+T    T+G MSCNPAIGG+ KG +VRE
Sbjct: 5   VSYDYDIVVVGAGHAGCEAALASARLGAKTALLTMNCDTVGQMSCNPAIGGVAKGQIVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGRV D  GIQFR+LN+ KGPA+  PR QAD++ Y+  M+ ++  Q+NL + Q
Sbjct: 65  IDALGGEMGRVIDETGIQFRMLNLSKGPAMHSPRAQADKKAYQFCMKWKVEQQDNLALRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + I  + +  ++  R   V+LTTGTFL+ ++H G+ K   GR G+  + +
Sbjct: 125 EIVKSLIVENDQICGVEVHGDATYRARAVILTTGTFLQAIMHTGEAKTKGGRAGEGTTGT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +  F+  R KTGTPARL+G+TI +   E+Q  DER  PFS+MT+K+T  Q+ C 
Sbjct: 185 LSDSLAQLGFELQRFKTGTPARLNGRTIDFSVLEEQPGDERPQPFSYMTEKLTQEQMPCY 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN   HR+I EN+  + +YSG I S GPRYCPSIEDK+VRF ERN HQIFLEPEG  
Sbjct: 245 LTETNEHVHRVINENLHRAPMYSGQINSTGPRYCPSIEDKVVRFSERNSHQIFLEPEGRY 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  Y NGIST+LP ++Q + I +I GLEK  I+R GYA+EYD+  P +L PTLETK+++
Sbjct: 305 TNEYYCNGISTSLPRDVQDEMIHSIRGLEKTEIMRYGYAVEYDFATPTQLKPTLETKRVA 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQ+NGTTGYEEAA QGL+AG+N+A K    + +   R ++Y+GV+IDDL +KGV 
Sbjct: 365 GLYFAGQLNGTTGYEEAAGQGLLAGLNAALKIAGKEDLILDRNEAYLGVLIDDLVTKGVD 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD R+TPIG ++G + + R ++F  Y  E + +   ++  
Sbjct: 425 EPYRMFTSRAEFRLLLRQDNADRRMTPIGQRIGSVSQERWEQFQAYEAEISQIMEFIRGN 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERLQIE 539
               + L                 E+L   D   +++    P+ + F  S   IE+  IE
Sbjct: 485 RYQGQTLE----------------EWLRRQDTGWEDICGFAPELKAFPLSERAIEQTLIE 528

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  E ++ K  E   IP   DY  +P L NE KEKLS +KP N+ QA +I 
Sbjct: 529 VQYAGYIKRQTAEIEKQKNVETLHIPDHIDYQLVPNLRNEAKEKLSRVKPRNIGQAGRIS 588

Query: 600 GMTPAALNLLLIYIKKNT 617
           G+TPA L +L++Y+  ++
Sbjct: 589 GVTPADLTVLVLYLNSSS 606


>gi|57239374|ref|YP_180510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58579341|ref|YP_197553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81170539|sp|Q5HAN4|MNMG_EHRRW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57161453|emb|CAH58378.1| glucose inhibited division protein A [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417967|emb|CAI27171.1| Glucose inhibited division protein A [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 625

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 411/617 (66%), Gaps = 7/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGH+GCEAAA AA++GA T LITH  STIG MSCNPAIGG+ KG +VRE+D
Sbjct: 2   KKYDVVVIGGGHSGCEAAAAAARIGAKTLLITHSISTIGEMSCNPAIGGIAKGIVVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+V D A I   +LN  KGPAV GPR QADR+LYR AMQ  IL+  NL V++  
Sbjct: 62  ALDGLMGKVIDNASINSTILNRSKGPAVWGPRAQADRDLYRHAMQNSILNYPNLTVLEAS 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V  F T  N     I+S++  D  +I    ++LTTGTFL+G IHIG    PAGR  +  S
Sbjct: 122 VENFTTTDNQELPTINSVITADQEVIYTKKLILTTGTFLQGTIHIGSYNTPAGRFNEQSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +   ++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+M++ I   QI 
Sbjct: 182 VGLAKTLASYNFKLGRLRTGTPPRLDRNSINFSGLQEQKGDTPPSPFSYMSESINLPQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           C +T TN +TH +I  N+ H A  S  +K    PRYCPSIE+K+ RF ERN HQ+FLEPE
Sbjct: 242 CYLTATNTKTHEVIKNNL-HKAAASNLLKEIKAPRYCPSIEEKVRRFSERNSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN++++YPNGI+T+ P ++Q   ++TI GLE V I+R GY++EY++I+P+EL+ TLETK
Sbjct: 301 GLNSEIIYPNGITTSSPLDVQQTMLKTISGLENVKIVRSGYSVEYNFIDPRELYHTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-KLDCICFSRTDSYIGVMIDDLTS 417
           KI GL+ AGQINGTTGYEEAA QG++AGIN+A   N   +     R D+YIGVMIDDL +
Sbjct: 361 KIRGLYCAGQINGTTGYEEAAGQGIIAGINAALSLNSNYEPFILKRNDAYIGVMIDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R     +  +E   L ++
Sbjct: 421 LGTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKVSAVSYQRYLTLNRKKEEVTKLTNI 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           LK  V+    LS   +   QDG+ R+A++ LS P+ ++  L  I    + + +  I++++
Sbjct: 481 LKETVILPSQLSQHGVCISQDGRKRSAFDLLSNPNINMNILSKIFNQIKNYHASTIQQVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  +Q ++ +    EE   IP D ++S +  LS E++EKL  +KP ++  A +
Sbjct: 541 IEAKYAPYFIKQELDIQSFIAEENTHIPHDIEFSQIHGLSTEIQEKLQYMKPPSIGSARR 600

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAA+  +L Y++
Sbjct: 601 IPGVTPAAITNILFYLR 617


>gi|294085213|ref|YP_003551973.1| glucose-inhibited division protein A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664788|gb|ADE39889.1| glucose-inhibited division protein A [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 648

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 312/625 (49%), Positives = 421/625 (67%), Gaps = 14/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAGCEAAA A+++GA+ AL+T +   IG MSCNPAIGGLGKGHLVREIDA
Sbjct: 4   AFDVIVVGGGHAGCEAAAAASRMGAAVALVTMRADRIGEMSCNPAIGGLGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR  D AGIQFR+LN  +GPAV GPR QADR LYR A+Q  +   +++ +I+  V
Sbjct: 64  LDGLMGRAIDRAGIQFRMLNKSRGPAVHGPRAQADRALYRAAIQEFLNEDDHITIIEAAV 123

Query: 125 ---------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                    AG       ++ I+ +D   ++ ++VVLTTGTFL G+IH+G  +  AGR+G
Sbjct: 124 GDLLVDDMAAGLTGAPRQVTGIICEDGRELKAASVVLTTGTFLGGLIHLGNERTEAGRIG 183

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           ++PSN L           GRLKTGTP RLDG+TI W   E Q AD   IPFS MTDKIT 
Sbjct: 184 EAPSNMLATRLADLALPLGRLKTGTPPRLDGRTIDWSVLEMQPADNPPIPFSTMTDKITV 243

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            QIECGITRT  +THRII E+I  SA+++G+I   GPRYCPSIEDK+ RF +++ HQ+FL
Sbjct: 244 PQIECGITRTTAKTHRIIAESIHLSAVFNGNISGQGPRYCPSIEDKVNRFADKDSHQLFL 303

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+   +YPNGIST+LP ++Q   ++TIPGLE+  I++ GYAIEY++++P+ L  TL
Sbjct: 304 EPEGLDDHTIYPNGISTSLPRDVQEALVKTIPGLEQTVILQHGYAIEYNFVDPRALRQTL 363

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD-----CICFSRTDSYIGV 410
           E + + GL+LAGQINGTTGYEEAAAQGL+AG+N+A  +   D          R D+YIGV
Sbjct: 364 ELRVLPGLYLAGQINGTTGYEEAAAQGLMAGVNAALAAASGDNRQKTSFTLDRADAYIGV 423

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL SKG  EPYRMFTSRAEYR+ LR DNAD RLT  GM +GC+G  RQ  + +  ++
Sbjct: 424 MIDDLISKGAPEPYRMFTSRAEYRLLLRADNADQRLTEKGMAIGCVGSARQNVWHRKHKQ 483

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
               ++ L SL  + K+L    +   +DG  RTA + LS    +I  L  + P+    +S
Sbjct: 484 LAKAKATLLSLTASGKDLEIAGLPKPRDGGKRTAADMLSLEGITIDRLTPLWPELANIAS 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           L   +L+ +  YA Y  RQ  +   ++ +E   IP D D+S +  LS E ++ L   +P 
Sbjct: 544 LYHAQLEADYRYAGYVARQKADIDALRRDEATAIPDDLDFSVIGGLSAEAQDVLKRRQPE 603

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA+++ G+TPA++  +L ++++
Sbjct: 604 TIGQANRLAGLTPASVVAVLRHLRR 628


>gi|148284568|ref|YP_001248658.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Orientia tsutsugamushi str. Boryong]
 gi|166222713|sp|A5CDS8|MNMG_ORITB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146740007|emb|CAM80083.1| glucose-inhibited division protein A [Orientia tsutsugamushi str.
           Boryong]
          Length = 622

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/589 (50%), Positives = 395/589 (67%), Gaps = 2/589 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G   ALIT K   +G M CNPAIGG GKGH+V+E+DALDGL+G +AD AGI +++LN 
Sbjct: 24  RIGVKVALITLKPENLGEMPCNPAIGGRGKGHIVKEVDALDGLIGYIADQAGIHYKMLNH 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV GPR Q DR LY+ AM   I++  NL  I   V       N ++++++ +   I
Sbjct: 84  TKGPAVWGPRAQIDRALYKSAMYSTIMNYPNLTTIFASVEDIKVIANKVTAVIV-NGKEI 142

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
            C  V+LTTGTFL GVIH GK +I AGR+G++ S  L N+  +     GRLKTGTP R+D
Sbjct: 143 YCQKVILTTGTFLSGVIHRGKEQIKAGRLGENASYGLSNTLSELGLRLGRLKTGTPPRID 202

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +TI + K E+Q  D    PFS +T K+   QI+C ITRTN  TH+II EN+  SA+YSG
Sbjct: 203 SRTIDYSKLEEQPGDLIPTPFSEITKKVLVPQIKCYITRTNEITHKIIKENLHLSAMYSG 262

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI+RF     HQIFLEPEGLN++ +YPNGIST+LP ++Q   IRT
Sbjct: 263 QIQGTGPRYCPSIEDKIIRFSHNASHQIFLEPEGLNSNTIYPNGISTSLPSDVQENMIRT 322

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   II  GYAIEYDY++P++L  +LE K + GL+LAGQINGTTGYEEAA QG++A
Sbjct: 323 IEGLENCKIIAYGYAIEYDYVDPRQLKHSLEVKSVGGLYLAGQINGTTGYEEAAGQGIMA 382

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    K D     RTD+YIGVMIDDLT+ G+ EPYRMFTSR+EYR+S+R DNAD R
Sbjct: 383 GINAALAVKKQDPFILDRTDAYIGVMIDDLTN-GIDEPYRMFTSRSEYRLSIRADNADQR 441

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  + LGC+ + RQ+ F K + + N LR  ++SL +T K L +      Q+G  RTA+
Sbjct: 442 LTPKAIDLGCVSQLRQEVFQKKLSKLNTLRDYVQSLTITPKQLQNCGYQISQNGIARTAF 501

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             L  P+F I  +  I P+  ++ + ++  L  ES Y  Y  RQ  + +  K EE   IP
Sbjct: 502 SLLGLPNFGINIVKDIYPELNRYDNNLLLLLTYESKYHVYLERQKEDIELFKQEETYQIP 561

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +D +Y  +P+LS E++EKL   +P  +  A  I G+TP+A+  ++I++K
Sbjct: 562 QDLNYDQIPSLSIEVREKLKQYQPETIRAAKHINGVTPSAIMAIIIFLK 610


>gi|270158240|ref|ZP_06186897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella longbeachae D-4968]
 gi|289163504|ref|YP_003453642.1| glucose-inhibited division protein A GidA [Legionella longbeachae
           NSW150]
 gi|269990265|gb|EEZ96519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella longbeachae D-4968]
 gi|288856677|emb|CBJ10488.1| putative glucose-inhibited division protein A GidA [Legionella
           longbeachae NSW150]
          Length = 624

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 304/621 (48%), Positives = 411/621 (66%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI++GGGHAG EAA  AA++G  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEKLYDVIIVGGGHAGTEAALAAARMGMQTLLLTHNMDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ +QENL + Q
Sbjct: 63  IDALDGAMAKAADKAGIQFRILNASKGPAVRATRAQADRVLYRQAIREQLQTQENLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ ++ Q    +R   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLLIEGERVAGVITQMGFTLRARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSVA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S    D   GRLKTGTP R+D +++ +++   Q  D  +  FS++     + +QI C
Sbjct: 183 LAKSLRDLDLPVGRLKTGTPPRIDRRSLDYNQMIVQPGDTPIPVFSYLGHVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEGL
Sbjct: 243 HITHTTEATHEIIRNNLHKSPMYAGVIEGVGPRYCPSIEDKIVRFADKSSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKPI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A    + +  C  R ++YIGV+IDDL ++G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALYVQEKELWCPRRDEAYIGVLIDDLITRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +GE R + FA   +     +SLL S
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGIVGETRWQHFATKREAIESTQSLLHS 482

Query: 481 -LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
             V  S N   + +          A EFL  P+ +  +L  + PD    + +S V E+++
Sbjct: 483 TWVRVSHNQILSDVLVNPMQHDTRAVEFLKRPEINYHHLL-MLPDLNLPELASEVSEQIE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  + ++++ +E  ++P+  DYS +  LSNE+ +KL+ ++P  L QAS+
Sbjct: 542 IQNKYAGYIDRQQQDIEKMRKQENMVLPEWLDYSEVTGLSNEVIQKLTKIRPTTLAQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAAL+LLL+++KK  +
Sbjct: 602 ISGVTPAALSLLLVHLKKQRI 622


>gi|310817162|ref|YP_003965126.1| glucose-inhibited division protein A [Ketogulonicigenium vulgare
           Y25]
 gi|308755897|gb|ADO43826.1| glucose-inhibited division protein A [Ketogulonicigenium vulgare
           Y25]
          Length = 623

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 299/588 (50%), Positives = 400/588 (68%)

Query: 28  GASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87
           GA TAL+T   + IG MSCNPAIGGLGKGHLVRE+DA+DG+MGRVAD AGIQFR+LN+KK
Sbjct: 28  GARTALVTLSQAGIGVMSCNPAIGGLGKGHLVREVDAMDGVMGRVADYAGIQFRMLNLKK 87

Query: 88  GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147
           GPAV+GPR QADR  YR  MQREI++  NL V+QGEV     +  +++ + + D + I  
Sbjct: 88  GPAVQGPRAQADRARYRTQMQREIMATPNLTVVQGEVVDLVVKDGVVTGVELADGAQIAT 147

Query: 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGK 207
             VVLTTGTFLRGVIHIG      GRMG+ PS  L           GRLKTGTP RLDG+
Sbjct: 148 RAVVLTTGTFLRGVIHIGDKSHAGGRMGEQPSVRLAERMRALALPLGRLKTGTPPRLDGR 207

Query: 208 TIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           TI W   E Q  D+  + FSF+      RQI CGIT TN  TH II EN+  SA+Y G I
Sbjct: 208 TIDWSVLESQPGDDVPVMFSFLNKVPPARQISCGITHTNARTHDIIRENLSRSAMYGGHI 267

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           +  GPRYCPSIEDKIVRF ++  HQIFLEPEGL+   VYPNGIST+LP+++Q  ++ +I 
Sbjct: 268 EGIGPRYCPSIEDKIVRFADKESHQIFLEPEGLDDHTVYPNGISTSLPQDVQADYVHSIK 327

Query: 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           GLE   I +PGYAIEYDY++P+ L  +LE K + GL+LAGQINGTTGYEEAAAQGL AG+
Sbjct: 328 GLENAVITQPGYAIEYDYVDPRALSASLEVKALPGLYLAGQINGTTGYEEAAAQGLAAGL 387

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+A K+   + + FSR +SYIGVMIDDL ++GV EPYRMFTSRAE+R+SLR DNAD RLT
Sbjct: 388 NAAAKALSQEAMIFSRANSYIGVMIDDLITRGVTEPYRMFTSRAEFRLSLRADNADQRLT 447

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
             G + G + + R + +A      N +R+ L+ +  T++ L++  ++   D ++R     
Sbjct: 448 EWGRENGAVKDARWQAYAAKRDGLNDVRARLEGVKFTARALAAAGVNINADKESRDGLGV 507

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L+  D S   + S+ P+       +  +++ ++ Y++Y  RQ  +   ++ +E   IP +
Sbjct: 508 LALSDTSFDTIISLAPEMSDVPGDIQAQIKRDALYSSYMDRQNRDIAALQRDENLTIPAE 567

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             +++LP LS+EL  KL  ++P N+ Q +KIEGMTP+A+ L+ I +++
Sbjct: 568 MSFTALPGLSSELALKLGRIRPGNMAQVAKIEGMTPSAMLLISIAVRR 615


>gi|114326675|ref|YP_743832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulibacter bethesdensis CGDNIH1]
 gi|122328340|sp|Q0BW93|MNMG_GRABC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114314849|gb|ABI60909.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Granulibacter bethesdensis CGDNIH1]
          Length = 629

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/614 (50%), Positives = 412/614 (67%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAGCEAAA AA+ GA TAL+TH+ +TIG MSCNPAIGG+GKGHLVREIDA
Sbjct: 11  AYDVIVVGGGHAGCEAAAAAARTGAITALVTHQAATIGEMSCNPAIGGIGKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR  D A I F++LN  KGPAVRGPR QADR+LY+ A+Q  + +  +L +I+G V
Sbjct: 71  LDGLMGRAIDQACIHFKMLNRSKGPAVRGPRAQADRKLYKKAVQDILHTTPHLSIIEGSV 130

Query: 125 AGFNTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               T    +  +  +++QD   +  S VVLTTGTFLRGVIH G+ +  AGR+G++PS  
Sbjct: 131 EDLITSSGTQQTVQGVILQDGRHLSASAVVLTTGTFLRGVIHCGEQRSEAGRVGEAPSIG 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       +   GRLKTGTP R+D ++I W+   +   +    PFS +   I   QI C 
Sbjct: 191 LAKRLDALNLRMGRLKTGTPPRIDRRSIAWEDLPEDRGENPPTPFSTLNHHIDLPQISCR 250

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I+ T  +TH+II +N+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+
Sbjct: 251 ISETTADTHQIIRDNLHRSAVYGGMLSGKGPRYCPSIEDKVVRFPDKTRHQVFLEPEGLD 310

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LP E+Q   + ++PGL    IIRPGYA+EYD+++P+ L P+LE K++ 
Sbjct: 311 DFTVYPNGISTSLPAEVQEALLHSMPGLHNAVIIRPGYAVEYDFVDPRSLRPSLELKELP 370

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGL+AG+N+ARK+  LD +   R+ +YIGV+IDDLT+ GV 
Sbjct: 371 GLFLAGQINGTTGYEEAGAQGLMAGLNAARKAQGLDSVTLDRSQAYIGVLIDDLTTHGVT 430

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+E+R++LR DNAD RLT  G + GC+ + R K FA Y Q  N   +L    
Sbjct: 431 EPYRMFTSRSEFRLTLRADNADRRLTRWGRQAGCVSDERWKTFAAYDQAMNDALTLAAQD 490

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T   L    I+ +QDG+ R     +       Q L    P        V E+L+IE +
Sbjct: 491 TRTPVQLQQVGITVRQDGRRRPLLSLIGSDPEQDQKLNQAFPWLHDLDPRVREQLEIEGA 550

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  E + ++ E+  L+    DYS++  LS E+++KL  L+P +L  AS++EGM
Sbjct: 551 YSGYLSRQDKERRVLQQEDTILLSDHIDYSAIGGLSAEIRDKLQSLRPTSLGAASRMEGM 610

Query: 602 TPAALNLLLIYIKK 615
           TPAAL  +  ++++
Sbjct: 611 TPAALAAISHFVRR 624


>gi|73667267|ref|YP_303283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia canis str. Jake]
 gi|123614801|sp|Q3YRH0|MNMG_EHRCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72394408|gb|AAZ68685.1| Glucose-inhibited division protein A subfamily [Ehrlichia canis
           str. Jake]
          Length = 625

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 303/616 (49%), Positives = 427/616 (69%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA A+++GA T LITH  STIG MSCNPAIGG+ KG +VRE+DAL
Sbjct: 4   YDVVVIGGGHAGCEAAAAASRIGAKTLLITHSISTIGEMSCNPAIGGIAKGTVVREVDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG+V D A I   +LN  KGPAV GPR QADR +Y+  MQ  IL+  NL V++  V 
Sbjct: 64  DGLMGKVIDKASIHSSILNRSKGPAVWGPRAQADRLIYKQTMQEIILNYPNLTVLEASVE 123

Query: 126 GF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            F    + +K+ + +++  +   I  S ++LTTGTFL+G IHIG    PAGR+G+ PS  
Sbjct: 124 DFTITQDNQKDSVKAVITSEQHTIYTSKLILTTGTFLQGTIHIGSYTTPAGRIGEQPSIG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  K++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+++  I   QI C 
Sbjct: 184 LAKTLEKYNFKLGRLRTGTPPRLDINSINFAVLQEQKGDIHPSPFSYISQSIDLPQISCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +T TN +TH +I  N+  +A  +   DIK+  PRYCPSIE+K+ RF +RN HQ+FLEPEG
Sbjct: 244 LTATNNKTHEVIKNNLHRAAASNLLKDIKA--PRYCPSIEEKVRRFSDRNSHQVFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LN+D++YPNGI+T+ P ++Q++ ++TIPGLEKVNI+R GY++EY++I+P+EL+ TLETKK
Sbjct: 302 LNSDIIYPNGITTSSPLDVQYEMLKTIPGLEKVNIVRSGYSVEYNFIDPRELYHTLETKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSK 418
           ISGL+ AGQINGTTGYEEAA QG++AGIN+A   S+  +     R+D+YIGVMIDDL + 
Sbjct: 362 ISGLYFAGQINGTTGYEEAAGQGIIAGINAALSLSSNYEPFILKRSDAYIGVMIDDLVTL 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R         +   L ++L
Sbjct: 422 GTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKVSAVSSKRYCALKNKQHDIESLTNIL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K++++T   L++  I   QDG  R+ ++ LS+P+ +I+ +  IC   +KFS  V+ +++I
Sbjct: 482 KNIIITPTQLAAYDIPVSQDGVKRSIFDLLSHPNINIETVSKICDVIKKFSKAVVSQVEI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ  + ++   EE   IP + ++S +  LS E++EKL+ +KP ++  A +I
Sbjct: 542 EGKYAPYFIRQDADIQDFIEEENTHIPSNIEFSQIHGLSKEIQEKLAHIKPPSIGSARRI 601

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+  +LIY++
Sbjct: 602 PGVTPAAITSILIYLR 617


>gi|189183418|ref|YP_001937203.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Orientia tsutsugamushi str. Ikeda]
 gi|238692238|sp|B3CR62|MNMG_ORITI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189180189|dbj|BAG39969.1| glucose inhibited division protein A [Orientia tsutsugamushi str.
           Ikeda]
          Length = 622

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/589 (50%), Positives = 395/589 (67%), Gaps = 2/589 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G   ALIT K   +G M CNPAIGG GKGH+V+E+DALDGL+G +AD AGI +++LN 
Sbjct: 24  RIGVKVALITLKPENLGEMPCNPAIGGRGKGHIVKEVDALDGLIGYIADQAGIHYKMLNH 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV GPR Q DR LY+ AM   I++  NL  I   V       N ++++++ +   I
Sbjct: 84  TKGPAVWGPRAQIDRALYKSAMYSTIMNYPNLTTIFASVEDIKVIANKVTAVIV-NGKEI 142

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
            C  V+LTTGTFL GVIH GK +I AGR+G++ S  L N+  +     GRLKTGTP R+D
Sbjct: 143 YCQKVILTTGTFLSGVIHRGKEQIKAGRLGENASYGLSNTLSELGLRLGRLKTGTPPRID 202

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +TI + K E+Q  D    PFS +T K+   QI+C ITRTN  TH+II EN+  SA+YSG
Sbjct: 203 SRTIDYSKLEEQPGDLIPTPFSEITKKVLVPQIKCYITRTNEITHKIIKENLHLSAMYSG 262

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI+RF     HQIFLEPEGLN++ +YPNGIST+LP ++Q   IRT
Sbjct: 263 QIQGTGPRYCPSIEDKIIRFSHNASHQIFLEPEGLNSNTIYPNGISTSLPSDVQENMIRT 322

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   II  GYAIEYDY++P++L  +LE K + GL+LAGQINGTTGYEEAA QG++A
Sbjct: 323 IEGLENCKIIAYGYAIEYDYVDPRQLKRSLEVKSVDGLYLAGQINGTTGYEEAAGQGIMA 382

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    K D     RTD+YIGVMIDDLT+ G+ EPYRMFTSR+EYR+S+R DNAD R
Sbjct: 383 GINAALAVKKQDPFILDRTDAYIGVMIDDLTN-GIDEPYRMFTSRSEYRLSIRADNADQR 441

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  + LGC+ + R++ F K + + N LR  ++SL +T K L +      Q+G  RTA+
Sbjct: 442 LTPKAIDLGCVSQLRKEVFQKKLSKLNTLRDYVQSLTITPKQLQNCGYQISQNGIARTAF 501

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             L  P+F I  +  I P+  ++ + ++  L  ES Y AY  RQ  +    K EE   IP
Sbjct: 502 SLLGLPNFGINIVKDIYPELNRYDNNLLLLLTYESKYHAYLERQKEDIVLFKQEETYQIP 561

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +D +Y  +P+LS E++EKL   +P  +  A  I G+TP+A+  ++I++K
Sbjct: 562 QDLNYDQIPSLSIEVREKLKQSQPETIRAAKHINGVTPSAIMAIIIFLK 610


>gi|95929980|ref|ZP_01312720.1| glucose inhibited division protein A [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133949|gb|EAT15608.1| glucose inhibited division protein A [Desulfuromonas acetoxidans
           DSM 684]
          Length = 622

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/613 (48%), Positives = 409/613 (66%), Gaps = 1/613 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ Y+V+V+G GHAGCEAA  AA++G  T L+      +  MSCNPAIGGL KGHLVREI
Sbjct: 5   DKKYEVVVVGAGHAGCEAALAAARMGHETLLLNMNLDAVAQMSCNPAIGGLAKGHLVREI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D  GIQFRVLN KKGPAV+  R QADR LY  +M+  + +QE LD+ QG
Sbjct: 65  DALGGQMAKNIDKTGIQFRVLNTKKGPAVQASRAQADRFLYSQSMKLVVENQEKLDLKQG 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V+    E+N I ++ +++     C  VVLTTGTF+RG+IH+G    P GR G+ PS  L
Sbjct: 125 TVSHLVVEENRIVAVEIKEGWRFNCQCVVLTTGTFMRGLIHVGMNHYPGGRSGEPPSLGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +   K  FD GRLKTGTP RL   +I + KTE+Q  D+   PFS++++++  +Q+ C I
Sbjct: 185 SDQLKKLGFDVGRLKTGTPPRLYRGSIDFSKTEEQPGDDTFRPFSYVSEQVNQQQVSCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQ+FLEPEGLN+
Sbjct: 245 TATNEQTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVVRFPEKTTHQVFLEPEGLNS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNG+ T+LP ++Q +F+RTIPGLE V I+R GYAIEYDY++P +L P+LETK I G
Sbjct: 305 SEIYPNGLPTSLPADVQLKFLRTIPGLENVEIMRVGYAIEYDYVDPIQLKPSLETKLIDG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAAAQGL+AGIN+ RK      +   R  +YIGV+IDDL + G  E
Sbjct: 365 LFHAGQVNGTSGYEEAAAQGLMAGINAVRKIEGKPPVILRRDQAYIGVLIDDLINLGSKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E+R K ++   +  +    LL    
Sbjct: 425 PYRMFTSRAEYRLLLREDNADERLTELGYQVGLVDEQRWKHYSTKKKHIDEALKLLVDER 484

Query: 483 LTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +T+K+     +++ ++    ++A + L  P+ +I  L  +      +S  V+ +++I   
Sbjct: 485 ITAKDKDKIAALNVEKISNGQSAKDLLKRPNITIAQLKGVVDGLDAYSDEVLLQVEIAVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + ++ K  E   IP+ FDY+ + +LS E+ EKL  ++P NL QAS+I G+
Sbjct: 545 YDGYIKRQNDQVEKFKKNELVKIPETFDYTKVQSLSAEVIEKLCKIRPENLGQASRIPGV 604

Query: 602 TPAALNLLLIYIK 614
           TPAA+ +L + ++
Sbjct: 605 TPAAITILSVLLR 617


>gi|307823023|ref|ZP_07653253.1| glucose inhibited division protein A [Methylobacter tundripaludum
           SV96]
 gi|307735798|gb|EFO06645.1| glucose inhibited division protein A [Methylobacter tundripaludum
           SV96]
          Length = 623

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 304/620 (49%), Positives = 402/620 (64%), Gaps = 6/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  +A+ GA+T L+T    T+G MSCNPAIGG+GKGHLV+E+D
Sbjct: 5   RDFDVIVVGGGHAGTEAALASARCGANTLLLTQNIDTLGQMSCNPAIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D  GIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q  
Sbjct: 65  ALGGVMAQAIDRGGIQFRTLNASKGPAVRATRAQADRQLYKQAVRTALENQPNLALFQQT 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E + ++ +  Q         VVLTTGTFL G IHIG      GR GD  S +L 
Sbjct: 125 VSDLIVEGDRVAGVKTQMGLNFTARAVVLTTGTFLGGKIHIGLENYSGGRAGDPASIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +  F   RLKTGTP R+DG+TI + K E+Q  DE +  FSF+     + RQI C I
Sbjct: 185 ERLRELPFRIDRLKTGTPPRIDGRTIDFSKLEEQHGDEPVPVFSFIGKPEHHPRQIPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRTN +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF +R+ HQIF+EPEGLNT
Sbjct: 245 TRTNNKTHDIIRSGLDRSPLYSGIIEGIGPRYCPSIEDKVVRFADRDSHQIFVEPEGLNT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q++F+R++ G E   I+RPGYAIEYD+ +P++L  +LETK ++ 
Sbjct: 305 HEIYPNGISTSLPFDVQYEFVRSMLGFENAEIVRPGYAIEYDFFDPRDLKSSLETKHMNA 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAAAQGL+AG+N+AR    LD  C  R ++YIGVMIDDL ++G  E
Sbjct: 365 LFFAGQVNGTTGYEEAAAQGLIAGLNAARLVQGLDSWCPGRDEAYIGVMIDDLITRGTQE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSL 481
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F  K          L K  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDARWQAFEIKRASIAQLQDDLKKKW 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           V T    +     +      R A   + L  P+  ++ L S    A      V E+++I+
Sbjct: 485 VRTETAEAGQVEQYWGKPLLREANLMDLLRRPEVDVKQLLSFMDSAEDMDPQVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           + YA Y  RQ  E  K ++++  RL P+  DY+ +P LSNE+ EKL   +P  L QAS+I
Sbjct: 545 AKYAGYIDRQQTEIDKALRYDHLRL-PEVIDYNGIPGLSNEVSEKLKKQRPETLGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++LLL+Y+KK + 
Sbjct: 604 PGITPAAISLLLVYLKKKSA 623


>gi|325109911|ref|YP_004270979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Planctomyces brasiliensis DSM 5305]
 gi|324970179|gb|ADY60957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Planctomyces brasiliensis DSM 5305]
          Length = 613

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/613 (48%), Positives = 395/613 (64%), Gaps = 20/613 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+LGA TAL+T    T+G MSCNPAIGG+ KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGTEAALASARLGAKTALLTMNCDTVGQMSCNPAIGGVAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D  GIQFR+LN  KGPA+  PR QAD++ Y+ +M+  + +QENL + Q    
Sbjct: 68  GGEMGLVIDETGIQFRMLNRSKGPAMHSPRAQADKKAYQFSMKERVEAQENLSLRQEMAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +E   I+ + ++ N++     VVLTTGTFL+ V+H G+ K   GR G+  + +L +S
Sbjct: 128 SLLSENGKITGVRVRGNAVYCAKAVVLTTGTFLQAVMHTGEAKTAGGRAGEGTTGTLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F F+  R KTGTPAR++G+TI + + E Q  D+   PFSF+TDKI+  Q++C IT T
Sbjct: 188 LREFGFELARFKTGTPARINGRTIDFTQVEPQPGDDEPQPFSFLTDKISQPQMDCYITDT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF  +N HQIFLEPEG NT   
Sbjct: 248 NESVHDVIRANLHRAPMYSGQINSQGPRYCPSIEDKVVRFASKNSHQIFLEPEGRNTYEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q Q IR+I GLE   ++R GYA+EYD+  P +L PTLETK++ GLF 
Sbjct: 308 YCNGISTSLPRDVQDQMIRSIRGLENAEVMRYGYAVEYDFAPPTQLTPTLETKRVEGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGL+AGIN+ARK+         R  +Y+GV+IDDL +KGV EPYR
Sbjct: 368 AGQINGTTGYEEAAGQGLIAGINAARKTAGQGEFVLERNQAYLGVLIDDLVTKGVDEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLTP+  +LG     R K F    ++ +  +  +++     
Sbjct: 428 MFTSRAEYRLLLRQDNADRRLTPLARELGLASRERLKSFEALSEQIDRAQQYVQTKRYQR 487

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQIESSYA 543
             L                 E+L  P+ + + L  + P+    + S     +++I+  Y+
Sbjct: 488 NTLE----------------EWLRRPEMTWEKLLEMVPELAELELSPRAARQVEIDGQYS 531

Query: 544 AYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
            Y  RQ  E A+  K    R IP  FDYS+LP L NE K+KLS ++P  L QA +I G+T
Sbjct: 532 GYLKRQDKEIARHAKIHSIR-IPAGFDYSALPQLRNEAKDKLSRVQPVTLGQAERISGIT 590

Query: 603 PAALNLLLIYIKK 615
           PA L +L++Y+ +
Sbjct: 591 PADLTVLMMYLDR 603


>gi|322421974|ref|YP_004201197.1| glucose inhibited division protein A [Geobacter sp. M18]
 gi|320128361|gb|ADW15921.1| glucose inhibited division protein A [Geobacter sp. M18]
          Length = 624

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 307/618 (49%), Positives = 401/618 (64%), Gaps = 9/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKKYDVIVVGAGHAGCEAALAAARIGCSTLMLTINLDAIALMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MGR  DA GIQFRVLN KKGPAVR  R QAD+++YRL M+  +  Q++LD+ Q 
Sbjct: 65  DALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQMYRLRMKHVMEQQDDLDLKQV 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV G   E   +  +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS  L
Sbjct: 125 EVTGLYIEDGAVVGVDTKGGVRFLGKTVVLTTGTFMRGLIHIGLVNYPGGRAGDLPSIGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +    + FD GRLKTGTPARLDG+TI + + EKQ+ DE  IPFSF TD+I   Q+ C I
Sbjct: 185 SDGLKDYGFDVGRLKTGTPARLDGRTIDFGRLEKQYGDEDPIPFSFSTDRIEQTQVPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG  T
Sbjct: 245 AYTNPRSHDIIRGGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGRET 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +  
Sbjct: 305 VEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLVRN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAAAQGL+AGIN+A +    D +   R+++YIGVMIDDL + G  E
Sbjct: 365 LYHAGQINGTSGYEEAAAQGLMAGINAALRVKGRDPLVLGRSEAYIGVMIDDLVTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL   G ++G + E   K F   + +   + S L+ L 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLREKGHEVGLVPEALYKSF---LAKKELIDSELERLC 481

Query: 483 LTSKNLSSTSISFKQDG-----KTRTAYE-FLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                 S+      Q+      +   +YE  L  PDF+ ++L  + P+       V E+L
Sbjct: 482 RERLTPSAAGEELLQEWDLVGIQNAISYEQLLRRPDFTCRDLSRVYPEIMALPEQVREQL 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ + +     E   IP D DY ++  LS E++EKL+  +P  L QAS
Sbjct: 542 EIQIKYKGYIQRQLEQVERSARLETSKIPDDMDYGTISGLSTEVREKLARFRPDTLGQAS 601

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA + +L I +K
Sbjct: 602 RIPGVTPAGITILSIALK 619


>gi|296114340|ref|ZP_06832994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295979101|gb|EFG85825.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 624

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 305/618 (49%), Positives = 410/618 (66%), Gaps = 6/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YDVIVIGGGHAGCEAAA AA+ GA T L+TH+ +T+G MSCNPAIGG+GKGHLVREI
Sbjct: 6   NATYDVIVIGGGHAGCEAAAAAARCGARTMLLTHQRATVGVMSCNPAIGGIGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDGLMG+ AD AGI F++LN  KGPAV GPR QADR LY+ A+   +   E L++++G
Sbjct: 66  DALDGLMGKAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYQRAILDLLAETEGLEIVEG 125

Query: 123 EVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                  +  + +  +V +D  +     VVLT GTFLRGVIH+G    PAGR+G++P+  
Sbjct: 126 AAGDLVVDDGHTVRGVVCEDGRIFHAGAVVLTAGTFLRGVIHVGHDSQPAGRVGEAPARR 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L           GRLKTGTPAR+   +I WD   +   D    PFS MTD ITN Q+ C 
Sbjct: 186 LGERLQALGLRMGRLKTGTPARIARDSIDWDALAEDRGDAIPEPFSRMTDTITNPQVSCR 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T   TH II E++  SAIY G I   GPRYCPSIEDK+VRF +R+ HQIFLEPE L 
Sbjct: 246 ITATTPRTHDIIREHLHLSAIYGGAISGRGPRYCPSIEDKVVRFAQRDSHQIFLEPEALP 305

Query: 302 TD----VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
            +    +VYPNGIST+LP ++Q Q + +IPGLE+  I+RPGYA+EYDY++P+EL P LE 
Sbjct: 306 DNPGGGLVYPNGISTSLPADVQEQMLHSIPGLERCRIVRPGYAVEYDYVDPRELTPALEL 365

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLFLAGQ+NGTTGYEEA AQG+VAGIN+AR++     +   R  +YIGVMIDDLT+
Sbjct: 366 KSLPGLFLAGQVNGTTGYEEAGAQGIVAGINAARRAAGEGAVTLDRGTAYIGVMIDDLTT 425

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +GV EPYRMFTSRAEYR++LR DNAD RLTP+GM  GCIG  R++RFA+     +     
Sbjct: 426 QGVSEPYRMFTSRAEYRLTLRADNADLRLTPLGMAWGCIGPARRQRFAEEQAAIDMAMER 485

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            ++     + L    I+   DG+ R+  + ++     +  + ++ P     S  V + + 
Sbjct: 486 ARTDTYPPETLRREGITVSADGRARSLLDVMATGAL-MDVVENVAPWVGSLSPRVRQHVA 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E+ Y+ Y  RQ  E +++  + + ++P D DY ++  LS E++E+LS  +P     A +
Sbjct: 545 TEARYSGYLSRQEREIRQLANDGRLVLPHDLDYHAIGGLSTEMQERLSQARPVTFGAAQR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TP+AL  +L ++++
Sbjct: 605 IPGITPSALVAVLSHVRQ 622


>gi|68171317|ref|ZP_00544716.1| Glucose-inhibited division protein A subfamily [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88657925|ref|YP_507179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia chaffeensis str. Arkansas]
 gi|123493607|sp|Q2GHA4|MNMG_EHRCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|67999268|gb|EAM85919.1| Glucose-inhibited division protein A subfamily [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599382|gb|ABD44851.1| glucose inhibited division protein A [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 625

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 307/615 (49%), Positives = 420/615 (68%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA AA++GA T LITH TSTIG MSCNPAIGG+ KG +VRE+DAL
Sbjct: 4   YDVVVIGGGHAGCEAAAAAARIGAKTLLITHSTSTIGEMSCNPAIGGIAKGTVVREVDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG+V D A I   +LN  KGPAV GPR QADR++Y+  MQ  IL+  NL V++  V 
Sbjct: 64  DGLMGKVIDKASINSSILNRSKGPAVWGPRAQADRKIYKNTMQDIILNYPNLTVLEASVE 123

Query: 126 GFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            F      EK  + +++  D  +I    ++LTTGTFL+G IHIG    PAGR G+ PS  
Sbjct: 124 DFTITEKDEKFTVETVITSDQQVIYTKKLILTTGTFLQGTIHIGSYNTPAGRFGEQPSIG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  K++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+M+  I   QI C 
Sbjct: 184 LAKTLEKYNFKLGRLRTGTPPRLDINSINFSGLQEQKGDSEPSPFSYMSQSIDLPQISCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           +T TN  TH +I  N+ H A  S  +K    PRYCPSIE+K+ RF ERN HQ+FLEPEGL
Sbjct: 244 LTATNTRTHEVIKNNL-HRAAASNSLKDIKAPRYCPSIEEKVRRFSERNSHQVFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +++++YPNGI+T+ P ++Q++ ++TIPGLEKVNIIR GY++EY++I+P+EL+ TLETKKI
Sbjct: 303 DSNIIYPNGITTSSPLDVQYEMLKTIPGLEKVNIIRSGYSVEYNFIDPRELYHTLETKKI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-KLDCICFSRTDSYIGVMIDDLTSKG 419
           SGL+ AGQINGTTGYEEAA QG++AGIN+A   N K +     R+D+YIGVMIDDL + G
Sbjct: 363 SGLYFAGQINGTTGYEEAAGQGIIAGINAALSLNSKYEPFILKRSDAYIGVMIDDLVTLG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLT +G ++  +  +R        QE   L ++LK
Sbjct: 423 TSEPYRLFTSRAEYRLRLRSDNADLRLTELGYQISVVSSKRYTILKNKKQEIITLTNILK 482

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +++ T   L+  +I   QDG  R+ ++ L +P+ +++ +  IC   ++F+  V E++ IE
Sbjct: 483 NIITTPTQLARHNIPISQDGVRRSIFDLLGHPNINMEIVSRICNTVKEFNKNVAEQVAIE 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  + K    EE   IP + ++S +  LS E++EKL  +KP ++  A +I 
Sbjct: 543 AKYAPYFDRQDADIKAFLEEENTHIPHNIEFSQIHGLSKEIQEKLEYIKPLSIGSARRIP 602

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+  +LIY++
Sbjct: 603 GITPAAITNILIYLR 617


>gi|254468635|ref|ZP_05082041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [beta proteobacterium KB13]
 gi|207087445|gb|EDZ64728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [beta proteobacterium KB13]
          Length = 634

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/624 (47%), Positives = 404/624 (64%), Gaps = 4/624 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + +YDVIVIGGGHAG EA+  AA++G  T LITH   T+G MSCNP+IGG+GKGHLV+EI
Sbjct: 5   DSNYDVIVIGGGHAGTEASLAAARMGQKTLLITHNIDTLGQMSCNPSIGGIGKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M + AD AGI FR+LN  KGPAVR  R QADR LYR A++  + +Q+NL + Q 
Sbjct: 65  DALGGVMAKAADQAGIHFRMLNASKGPAVRATRAQADRVLYRKAIKHHLENQDNLSIFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +++ +  +V +        +V+LT GTFL GV+H+G     AGR GD  S +L
Sbjct: 125 PVDDLIIKEDQVQGVVTESGIHFYAKSVILTAGTFLDGVVHVGLKNYQAGRAGDPSSKTL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +   + +   GRLKTGTP R+DG++I +   E+Q  D     FS  +  + +  QI C 
Sbjct: 185 AHRLNQLNLPVGRLKTGTPPRIDGRSIDYSVMEEQPGDAPTPYFSLQSPLLEHPEQISCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL 
Sbjct: 245 ITHTNSATHNIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q++ +R+I GLE+  I RPGYAIEY+Y +P+ L  +L+TK I 
Sbjct: 305 THEIYPNGISTSLPFDVQYELVRSIKGLEQAYITRPGYAIEYNYFDPRNLQSSLQTKTIE 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGLVAGIN+A K+      C  R +SYIGVMIDDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLVAGINAALKAQNKPSWCPKREESYIGVMIDDLITRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LG + + +  RF K  Q  +   +++K  
Sbjct: 425 EPYRMFTSRAEYRLLLREDNADQRLTSAGYDLGVVNQTQYDRFMKKDQGIHSCLNIMKKT 484

Query: 482 VLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V   + + +     I  K+  +  + Y+ +  P+ + + L       + +   +IE+ +I
Sbjct: 485 VTKPEAIPADDQQRIFGKKLEREYSIYDLIKRPNVNWKQLQDFMRLDQDYDDQIIEQAEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y+ Y  RQ  E  +I+ +    IPK+ ++  +  LSNE  +K   + P N+ QASKI
Sbjct: 545 SAKYSGYISRQSDEILKIQSQYAMKIPKNMNFEDISGLSNEAVQKFKDVMPENIQQASKI 604

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+TPA + LL++Y+KK+ VK ++
Sbjct: 605 SGITPANIALLVVYLKKSAVKQDK 628


>gi|58698629|ref|ZP_00373524.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630672|ref|YP_002727463.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia sp. wRi]
 gi|254811524|sp|C0R430|MNMG_WOLWR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58534851|gb|EAL58955.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592653|gb|ACN95672.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia sp. wRi]
          Length = 644

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/618 (48%), Positives = 394/618 (63%), Gaps = 25/618 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           +LG +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN 
Sbjct: 24  RLGTNTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDRASIHSVILNS 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQ 140
            +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++  
Sbjct: 84  SRGAAVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITS 143

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
               I    VVLTTGTFL+GVIHIG+   P+GRMGD P+  L N+  K+DF  GRL+TGT
Sbjct: 144 SGEHILTGKVVLTTGTFLQGVIHIGEQTTPSGRMGDKPAVELANTLNKYDFRLGRLRTGT 203

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
           P RLD  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  S
Sbjct: 204 PPRLDRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRS 263

Query: 261 AI-YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           A  Y  D+    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q
Sbjct: 264 ASSYLSDV--VAPRYCPSIEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQ 321

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
            + I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA
Sbjct: 322 REMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAA 381

Query: 380 AQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
            QG++AGIN+A  +  K +     RTDSYIGVMIDDL +KGV+EPYR+FTSRAEYR+++R
Sbjct: 382 GQGIIAGINAALSAFEKKESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFTSRAEYRLAIR 441

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT  G  +  +   R       ++    L   L SL +T + L S  I    D
Sbjct: 442 SDNADRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYD 501

Query: 499 GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL----------------VIERLQIESSY 542
           G  +TA + LSYP+     L  I P+    +                  + E ++IE+ Y
Sbjct: 502 GIRKTALDLLSYPNIDWNKLQEIWPELSSVTRWNDKMGHTKADNRAKNEICEAVEIEAKY 561

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  + K ++ E    IP DF+YS +  LS+E+ EKL  +KP  +  A +I+G+T
Sbjct: 562 KPYLIRQEADMKFLREEINTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGIT 621

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAA+  +L+Y++    K+
Sbjct: 622 PAAIVSILVYLRNRKTKV 639


>gi|118497772|ref|YP_898822.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. novicida U112]
 gi|194323744|ref|ZP_03057520.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           novicida FTE]
 gi|208779835|ref|ZP_03247179.1| glucose-inhibited division protein A [Francisella novicida FTG]
 gi|166222934|sp|A0Q753|MNMG_FRATN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118423678|gb|ABK90068.1| glucose inhibited division protein A [Francisella novicida U112]
 gi|194322108|gb|EDX19590.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           novicida FTE]
 gi|208744290|gb|EDZ90590.1| glucose-inhibited division protein A [Francisella novicida FTG]
          Length = 627

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/619 (50%), Positives = 407/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + RQI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    +++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHF---ISKKNAIIENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|85709801|ref|ZP_01040866.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
 gi|85688511|gb|EAQ28515.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
          Length = 617

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/610 (46%), Positives = 403/610 (66%), Gaps = 1/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAA  AA++GA T L++     +G+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 4   FDVLVIGGGHAGVEAACAAARMGARTGLVSFDLEAVGAMSCNPAIGGLGKGHLVREVDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG++G  ADA  I +R+LN  KG AV GPR QADR +++ A+Q+    Q NL +++GE A
Sbjct: 64  DGVIGIAADAGAIHYRMLNRSKGSAVWGPRVQADRVMFKAAVQQIARQQRNLTLVEGEAA 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + +   ++ + + D ++++   V+L TGTFL GV+  G+ +   GR+G++ +  L   
Sbjct: 124 ALSIKGGAVAGLELADGTLLQAPRVILCTGTFLGGVLFRGEERFEGGRIGENAATRLAAQ 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
               D    RLKTGTP RLDG+TI W + E+Q +D+     S +T +  N Q+ C ITRT
Sbjct: 184 LRSADLPMARLKTGTPPRLDGRTIDWSQLEEQPSDDESWTMSPLTKERQNPQVFCAITRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H II +N+  S ++SG I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL T +V
Sbjct: 244 TQVAHDIIRDNLDRSPLFSGAIDAAGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLGTHLV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP ++Q   +R +PGL  V +  PGYA+EYD+I+P+ L P L+ + I GL+ 
Sbjct: 304 YPNGISTSLPVDVQQAMLRAMPGLASVEMAVPGYAVEYDHIDPRALTPDLQLRAIPGLYC 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+ +A  +        +R +SYI VMIDDLT +GV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLVAGLEAAASALGAMAPALNRANSYIAVMIDDLTLQGVSEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR +NA +RLT +G++ GCIG+ R K F++       +     SL + +
Sbjct: 424 MLTSRAEYRLRLRANNASSRLTGLGLEAGCIGDDRAKWFSERQSSQTTVMEAF-SLSIRA 482

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           + L+   ++ ++DG  +T  E+L +   +I  L    PDA      ++E +  +++YA Y
Sbjct: 483 RELADAGLNVRRDGGEKTIEEWLRHDGVTIDTLRPWLPDATLEDRQILEEMAEDAAYAPY 542

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  E ++++  E+  +  DF Y  +P LSNE+ E+LS   P  L  A ++ G+TPAA
Sbjct: 543 LARQEAELRDLRASEELPLASDFPYGEVPGLSNEMVERLSSAAPTTLAAAGRVPGVTPAA 602

Query: 606 LNLLLIYIKK 615
           L+ LL++ ++
Sbjct: 603 LSALLVHARR 612


>gi|329113882|ref|ZP_08242653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acetobacter pomorum DM001]
 gi|326696892|gb|EGE48562.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acetobacter pomorum DM001]
          Length = 632

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 313/622 (50%), Positives = 412/622 (66%), Gaps = 10/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+GGGHAGCEAAA AA+ GA T L+TH  +T+G+MSCNPAIGG+GKGHLVRE
Sbjct: 7   MNKAYDVIVVGGGHAGCEAAAAAARCGAKTLLLTHHKNTVGAMSCNPAIGGIGKGHLVRE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDG+M R AD AGI F++LN  KGPAV+GPR QADR LYR A+Q  +     LD+ +
Sbjct: 67  VDALDGVMARAADRAGIHFKLLNRSKGPAVQGPRAQADRLLYRQAVQDILADTAGLDIEE 126

Query: 122 GEVAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      ++N ++ +  +D        VVLTTGTFL GVIHIG    PAGR+G+ PS 
Sbjct: 127 AAVTDLIYDDQNRVAGVACEDGRQWAAGAVVLTTGTFLDGVIHIGHKSQPAGRIGEQPSV 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L +   K      RLKTGTPARL   TI W        D    PFS +T  ITN Q+ C
Sbjct: 187 ALASRLKKLGLRIARLKTGTPARLKRDTIDWASLAVDRGDISPEPFSRLTASITNPQMVC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  +TH II E++  SA+Y G I   GPRYCPSIEDK+VRF E+ GHQIFLEPE L
Sbjct: 247 GITTTVPKTHDIIREHLHLSAVYGGAISGRGPRYCPSIEDKVVRFSEKTGHQIFLEPEAL 306

Query: 301 ----NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                 D+VYPNGIST+LP ++Q   I +IPGLEK  I + GYA+EYDY++P+EL  +LE
Sbjct: 307 PDHEGGDLVYPNGISTSLPADVQDAMIHSIPGLEKAVIAQYGYAVEYDYVDPRELTVSLE 366

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            KK   LFLAGQINGTTGYEEA AQGL+AG+N+AR++     +   R  +Y+GVMIDDLT
Sbjct: 367 LKKCPNLFLAGQINGTTGYEEAGAQGLLAGVNAARRAGGQQAVSLDRGKAYLGVMIDDLT 426

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTPIG+  GCIG  R++ FA+ ++E   L  
Sbjct: 427 TQGVSEPYRMFTSRAEYRLTLRADNADVRLTPIGLDWGCIGAERREAFARDMREIEQLTQ 486

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKFSSLVIE 534
             +S     + L+   I   QDG+ R   E +  + P+ +I+ L    P  +++S     
Sbjct: 487 KAESESWPPQALAQVGIKVAQDGRRRNLLEVIGQAVPENTIEAL---APWVQEYSERARS 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E+ Y+ Y  RQ  E K+++ E +   P+D D+  +  LS E++E+L   +P +   
Sbjct: 544 YVRTEARYSGYLVRQKREIKQLEAETEIRFPQDMDFRKIGGLSAEMQERLEQARPESFGA 603

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           A +I G+TP+AL  +L Y+KK 
Sbjct: 604 AQRIPGITPSALMAVLAYLKKG 625


>gi|197120416|ref|YP_002140843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter bemidjiensis Bem]
 gi|197089776|gb|ACH41047.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-
           formylglycinetransferase/reductase [Geobacter
           bemidjiensis Bem]
          Length = 624

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/618 (49%), Positives = 401/618 (64%), Gaps = 9/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKTYDVIVVGAGHAGCEAALAAARMGRSTLMLTINLDAIALMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MGR  DA GIQFRVLN KKGPAVR  R QAD++LYRL M+  +  Q+NLD+ Q 
Sbjct: 65  DALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQLYRLRMKHVMEQQDNLDLKQV 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E   ++ +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS  L
Sbjct: 125 EVTDLYLEDGSVAGVDTKGGVRYLSRTVVLTTGTFMRGLIHIGLVHYPGGRAGDLPSIGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +      F+ GRLKTGTPARLDG+TI +++ E Q  DE  IPFSF T++I  +Q+ C I
Sbjct: 185 SDGLKDVGFEVGRLKTGTPARLDGRTIDFERLEAQHGDENPIPFSFSTERIEQQQVPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ++H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG  T
Sbjct: 245 AYTNPKSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGRET 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +  
Sbjct: 305 VEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLVRN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R+++YIGVMIDDL + G  E
Sbjct: 365 LYNAGQINGTSGYEEAAAQGLMAGINAALRVQGKEPLVLGRSEAYIGVMIDDLVTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL   G  +G + E     +  ++ +   + S L  L 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLREKGHDIGLVPE---SLYHSFLAKKELIDSELDRLS 481

Query: 483 LTSKNLSSTSISFKQDG-----KTRTAYE-FLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                 S+      Q+      +   +YE  L  PDF+  +L  I P+  +    V E+L
Sbjct: 482 RERLTPSAAGEELLQEWDLVGIQNAISYEQLLRRPDFTCSDLSRIYPEIMELPETVREQL 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ +       E   IP D DYS++P+LS E++EKL   +P  L QAS
Sbjct: 542 EIQIKYKGYIERQLEQVARAARLESTTIPADMDYSTVPSLSAEVREKLVRFRPDTLGQAS 601

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA + +L I +K
Sbjct: 602 RIPGVTPAGITILSIALK 619


>gi|52843084|ref|YP_096883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81170552|sp|Q5ZRJ2|MNMG_LEGPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52630195|gb|AAU28936.1| glucose inhibited division protein A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 624

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 304/616 (49%), Positives = 402/616 (65%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q  V 
Sbjct: 67  DGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +L  S
Sbjct: 127 DLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIALSKS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
               D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++     + +Q+ C IT 
Sbjct: 187 LRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGAASDHPQQVPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL T+ 
Sbjct: 247 TTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLTTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I  LF
Sbjct: 307 IYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAIPNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-KSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL  S V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLYNSWVR 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQIES 540
              N       F        A EFL  P+ + Q+L  +  D      L   + E+++I++
Sbjct: 487 VHHNDLFKETLFNPMQHDCRAVEFLKRPEINYQHLLMM--DDLNLPELPQEITEQIEIQN 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E ++++  E  L+P+  DY+ +  LS+E+ +KL+ +KP +L QA +I G
Sbjct: 545 KYAGYIDRQQQEIEKLRKHENTLLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRISG 604

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAAL+LLL+++KK+
Sbjct: 605 VTPAALSLLLVHLKKS 620


>gi|332678488|gb|AEE87617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella cf. novicida Fx1]
          Length = 627

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/619 (49%), Positives = 407/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + +QI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPQQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNYETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    +++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHF---ISKKNAIIENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|254373130|ref|ZP_04988619.1| glucose inhibited division protein A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570857|gb|EDN36511.1| glucose inhibited division protein A [Francisella novicida
           GA99-3549]
          Length = 627

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/616 (49%), Positives = 404/616 (65%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + +QI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPQQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F     +     +++K+  +
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNDIIENIAMMKNTWI 486

Query: 484 TSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIE 539
             +   +  +    D K TR  T ++ L  P+     L  I   +       VIE+++I 
Sbjct: 487 GPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIEQIEIS 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS+I 
Sbjct: 547 AKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEASRIP 606

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++LL IY+KK
Sbjct: 607 GITPAAISLLTIYMKK 622


>gi|54298881|ref|YP_125250.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila str. Paris]
 gi|81170551|sp|Q5X0Z8|MNMG_LEGPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53752666|emb|CAH14101.1| hypothetical protein lpp2948 [Legionella pneumophila str. Paris]
          Length = 624

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/617 (49%), Positives = 406/617 (65%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q  V 
Sbjct: 67  DGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +L  S
Sbjct: 127 DLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIALSKS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++ T     +Q+ C IT 
Sbjct: 187 LRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL T+ 
Sbjct: 247 TTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLTTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I  LF
Sbjct: 307 IYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAIPNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R + F+K  +     ++LL  S V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWESFSKKREAIESTQALLHNSWVR 486

Query: 484 TSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQIE 539
              N L   ++        R A EFL  P+ + Q+L  +  D      L   + E+++I+
Sbjct: 487 VHHNDLFKEALLNPMQHDCRAA-EFLKRPEINYQHLLMM--DDLNLPELPQEITEQIEIQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +I 
Sbjct: 544 NKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRIS 603

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAAL+LLL+++KK+
Sbjct: 604 GVTPAALSLLLVHLKKS 620


>gi|254369131|ref|ZP_04985143.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122081|gb|EDO66221.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 627

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/619 (50%), Positives = 406/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + RQI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    S++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHF---ISKKNAIIENISMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|148361201|ref|YP_001252408.1| glucose inhibited division protein A [Legionella pneumophila str.
           Corby]
 gi|296108537|ref|YP_003620238.1| glucose inhibited division protein A [Legionella pneumophila
           2300/99 Alcoy]
 gi|166222940|sp|A5II62|MNMG_LEGPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148282974|gb|ABQ57062.1| glucose inhibited division protein A [Legionella pneumophila str.
           Corby]
 gi|295650439|gb|ADG26286.1| glucose inhibited division protein A [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611762|emb|CBX01470.1| hypothetical protein LPW_31581 [Legionella pneumophila 130b]
          Length = 624

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/617 (49%), Positives = 405/617 (65%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q  V 
Sbjct: 67  DGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +L  S
Sbjct: 127 DLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIALSKS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++ T     +Q+ C IT 
Sbjct: 187 LRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL T+ 
Sbjct: 247 TTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLTTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I  LF
Sbjct: 307 IYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAIPNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL  S V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLHNSWVR 486

Query: 484 TSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQIE 539
              N L   ++        R A EFL  P+ + Q+L  +  D      L   + E+++I+
Sbjct: 487 VHHNDLFKEALLNPMQHDCRAA-EFLKRPEINYQHLLMM--DDLNLPELPQEITEQIEIQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +I 
Sbjct: 544 NKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRIS 603

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAAL+LLL+++KK+
Sbjct: 604 GVTPAALSLLLVHLKKS 620


>gi|209544085|ref|YP_002276314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531762|gb|ACI51699.1| glucose inhibited division protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 620

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/618 (50%), Positives = 397/618 (64%), Gaps = 12/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA AA+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAAAAAARCGARTLLLTHRRDTIGAMSCNPAIGGIGKGHLVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM R AD AGI F++LN  KGPAV GPR QADR LYR A+Q  +    NLD+ +G   
Sbjct: 65  DGLMARAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRRAIQDLLAETANLDIAEGAAG 124

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +     + +V +D    R   VVLT GTFLRGVIHIG    PAGR+G+ P+++L  
Sbjct: 125 DLIVDDAGQAAGVVCEDGRQFRAGAVVLTAGTFLRGVIHIGHDSHPAGRVGEPPAHALGE 184

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLD  +I WD   +   D    PFS +T  I N Q+ C IT 
Sbjct: 185 RLQALGLPMGRLKTGTPARLDRTSIDWDSLAEDRGDAVPEPFSRLTQAIDNPQLSCRITA 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL---- 300
           T   TH +I E++  SA+Y G I   GPRYCPSIEDK+VRF ER+ HQIFLEPE L    
Sbjct: 245 TTPRTHALIREHLHLSAVYGGAIAGRGPRYCPSIEDKVVRFAERDSHQIFLEPEALPGNA 304

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D+VYPNGIST+LP +IQ Q I +IPGLE+  I+RPGYA+EYDY++P+ L PTLE   +
Sbjct: 305 GGDLVYPNGISTSLPADIQEQLIHSIPGLERCRIVRPGYAVEYDYVDPRALAPTLELTAL 364

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LFLAGQINGTTGYEEA AQGL+AG+N+AR++   + I   R  +Y+GVMIDDLT++GV
Sbjct: 365 PRLFLAGQINGTTGYEEAGAQGLLAGLNAARRAGGGEGIAIDRGAAYLGVMIDDLTTQGV 424

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT  G+  GC+G  R   F       +       +
Sbjct: 425 SEPYRMFTSRAEYRLSLRADNADLRLTGQGIGWGCVGSARAHLFTAERDAIDTAMQRAGA 484

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFL---SYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                  L    I+   DG+ RT  + L   + PD     +  I P      S V   ++
Sbjct: 485 ESFLPDALQQAGITVSADGRRRTLLDVLATAATPD----AIARIAPWFAALPSRVSRHVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E+ Y+ Y  RQ  E ++++ E +  +P D DY  +  LS+E++E+L+  +P +   A +
Sbjct: 541 TEARYSGYLVRQAREIRQLEAETRITLPADLDYRRIGGLSSEMQERLAAARPASFSAAQR 600

Query: 598 IEGMTPAALNLLLIYIKK 615
           + G+TP+AL  LL ++++
Sbjct: 601 VPGITPSALMALLSHVRQ 618


>gi|54295714|ref|YP_128129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila str. Lens]
 gi|81170553|sp|Q5WSS4|MNMG_LEGPL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53755546|emb|CAH17045.1| hypothetical protein lpl2802 [Legionella pneumophila str. Lens]
          Length = 624

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/617 (49%), Positives = 405/617 (65%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q  V 
Sbjct: 67  DGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +L  S
Sbjct: 127 DLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIALSKS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++ T     +Q+ C IT 
Sbjct: 187 LRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVSCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL T+ 
Sbjct: 247 TTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLTTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I  LF
Sbjct: 307 IYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAIPNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+A +    D  C  R ++YIGV+IDDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGIIAGMNAALQIKGQDLWCPRRDEAYIGVLIDDLITCGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL  S V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLHNSWVR 486

Query: 484 TSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQIE 539
              N L   ++        R A EFL  P+ + ++L  +  D      L   + E+++I+
Sbjct: 487 VHHNDLFKEALLNPMQHDCRAA-EFLKRPEINYRHLLMM--DDLNLPELPQEITEQIEIQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +I 
Sbjct: 544 NKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRIS 603

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAAL+LLL+++KK+
Sbjct: 604 GVTPAALSLLLVHLKKS 620


>gi|162139859|ref|YP_413449.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosospira multiformis ATCC 25196]
 gi|205375715|sp|Q2Y5B4|MNMG_NITMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 632

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/622 (48%), Positives = 404/622 (64%), Gaps = 7/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARIGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   AD AGIQFR+LN +KGPAVR  R QADR LYR A+++ + SQ NL + Q  V 
Sbjct: 67  GGVMAEAADEAGIQFRILNSRKGPAVRATRAQADRVLYRQAIRQRLESQPNLWLFQQGVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         V+LT GTFL G+ H+G     AGR GD PSNSL   
Sbjct: 127 DLVLEGERVAGVVTQLGIRFNARAVILTAGTFLAGLAHVGSANFQAGRAGDLPSNSLAGR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSFM +  ++ +Q+ C IT 
Sbjct: 187 LRELKLPVGRLKTGTPPRIDGRTIDYSAVAAQPGDAPVPVFSFMGNAASHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S ++SG I+  GPRYCPSIEDK+VRF  +  HQIFLEPEGL T  
Sbjct: 247 TNSQTHDIIRSGLDRSPLFSGAIEGIGPRYCPSIEDKVVRFSAKESHQIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LET+ I GLF
Sbjct: 307 VYPNGISTSLPFDMQVKLVRSIKGLENAHITRPGYAIEYDYFDPRALKSSLETRMIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A K+   +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALKTQDREPWCPRRDEAYLGVLVDDLITRGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R   F   ++     ++ LK+  L+
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEVGRRLGVVNDARWVAFNIKLEAIAQEQNRLKTTWLS 486

Query: 485 SKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
            K+LS T  + +  GK      + ++ L  P+ S   L ++         L   E+++I+
Sbjct: 487 PKSLSETD-ALRVIGKNIEHECSLHDLLRRPNVSYAELMTLPGAGEPVVDLAAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E     + E   +P+D DY ++  LSNE+++KL+  KP    QAS+I 
Sbjct: 546 AKYQGYIERQKDEVARNAYYEDIRLPQDLDYKTVRGLSNEVQQKLNQFKPETAGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G+TPAA++LLL+++K+     N
Sbjct: 606 GITPAAISLLLVHVKRGFSSAN 627


>gi|82411948|gb|ABB76057.1| glucose inhibited division protein A [Nitrosospira multiformis ATCC
           25196]
          Length = 647

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/622 (48%), Positives = 404/622 (64%), Gaps = 7/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 22  FDVIVIGGGHAGTEAALAAARIGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   AD AGIQFR+LN +KGPAVR  R QADR LYR A+++ + SQ NL + Q  V 
Sbjct: 82  GGVMAEAADEAGIQFRILNSRKGPAVRATRAQADRVLYRQAIRQRLESQPNLWLFQQGVD 141

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         V+LT GTFL G+ H+G     AGR GD PSNSL   
Sbjct: 142 DLVLEGERVAGVVTQLGIRFNARAVILTAGTFLAGLAHVGSANFQAGRAGDLPSNSLAGR 201

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSFM +  ++ +Q+ C IT 
Sbjct: 202 LRELKLPVGRLKTGTPPRIDGRTIDYSAVAAQPGDAPVPVFSFMGNAASHPKQVSCWITH 261

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S ++SG I+  GPRYCPSIEDK+VRF  +  HQIFLEPEGL T  
Sbjct: 262 TNSQTHDIIRSGLDRSPLFSGAIEGIGPRYCPSIEDKVVRFSAKESHQIFLEPEGLTTHE 321

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LET+ I GLF
Sbjct: 322 VYPNGISTSLPFDMQVKLVRSIKGLENAHITRPGYAIEYDYFDPRALKSSLETRMIEGLF 381

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A K+   +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 382 FAGQINGTTGYEEAAAQGLLAGINAALKTQDREPWCPRRDEAYLGVLVDDLITRGVTEPY 441

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R   F   ++     ++ LK+  L+
Sbjct: 442 RMFTSRAEYRLQLREDNADLRLTEVGRRLGVVNDARWVAFNIKLEAIAQEQNRLKTTWLS 501

Query: 485 SKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
            K+LS T  + +  GK      + ++ L  P+ S   L ++         L   E+++I+
Sbjct: 502 PKSLSETD-ALRVIGKNIEHECSLHDLLRRPNVSYAELMTLPGAGEPVVDLAAAEQVEIQ 560

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E     + E   +P+D DY ++  LSNE+++KL+  KP    QAS+I 
Sbjct: 561 AKYQGYIERQKDEVARNAYYEDIRLPQDLDYKTVRGLSNEVQQKLNQFKPETAGQASRIS 620

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G+TPAA++LLL+++K+     N
Sbjct: 621 GITPAAISLLLVHVKRGFSSAN 642


>gi|89256126|ref|YP_513488.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica LVS]
 gi|115314600|ref|YP_763323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica OSU18]
 gi|156502147|ref|YP_001428212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009829|ref|ZP_02274760.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931542|ref|YP_001891526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254367451|ref|ZP_04983477.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|122325376|sp|Q0BMJ8|MNMG_FRATO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122500919|sp|Q2A464|MNMG_FRATH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222933|sp|A7NBA3|MNMG_FRATF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89143957|emb|CAJ79178.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129499|gb|ABI82686.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253267|gb|EBA52361.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156252750|gb|ABU61256.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|187712451|gb|ACD30748.1| glucose inhibited division protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 627

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/619 (49%), Positives = 406/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + RQI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    +++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHF---ISKKNAIIENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|260913576|ref|ZP_05920053.1| glucose-inhibited division protein A [Pasteurella dagmatis ATCC
           43325]
 gi|260632352|gb|EEX50526.1| glucose-inhibited division protein A [Pasteurella dagmatis ATCC
           43325]
          Length = 629

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/622 (48%), Positives = 399/622 (64%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q+NLD+ Q EV
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQDNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +S +  +     R   V+LT GTFL G IHIG      GR GD  S  L +
Sbjct: 126 TDIILEGDRVSGVETKMGLKFRAKAVILTAGTFLSGKIHIGLENYTGGRAGDPASVMLAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
                +    RLKTGTP R+D +TI +    KQ  DE+L  FSFM     +  QI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTIDFSILAKQHGDEKLPVFSFMGSVDQHPCQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFSERNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + + ++ G+EK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EIYPNGISTSLPFDVQMKIVNSMKGMEKARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKDAWFPRRDQAYVGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + ++     R  L+ + L
Sbjct: 426 YRVFTSRAEYRLLLREDNADSRLTPIAQELGLITEERWARFNQKMENIELERQRLRQIWL 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIE 534
             ++        + S+ +  + +G+     + L  P+ + Q L ++ P          +E
Sbjct: 486 HPRSEYLEEANQVLSSPLVREANGE-----DLLRRPEINYQILTTLTPFQPAMKDKEAVE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y   Q  E +  K  E   IP +FDYS +  LSNE++ KL   +P ++ Q
Sbjct: 541 QVEIAIKYQGYIEHQQEEIERQKRHENTTIPANFDYSVVSGLSNEVRAKLEQHRPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+ +KK 
Sbjct: 601 ASRISGITPAAISILLVNLKKQ 622


>gi|253702731|ref|YP_003023920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter sp. M21]
 gi|251777581|gb|ACT20162.1| glucose inhibited division protein A [Geobacter sp. M21]
          Length = 624

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 303/618 (49%), Positives = 399/618 (64%), Gaps = 9/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKTYDVIVVGAGHAGCEAALAAARMGRSTLMLTINLDAIALMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MGR  DA GIQFRVLN KKGPAVR  R QAD++LYRL M+  +  Q+NLD+ Q 
Sbjct: 65  DALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQLYRLRMKHVMELQDNLDLKQV 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E   ++ +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS  L
Sbjct: 125 EVTNLYLEGGSVAGVDTKGGVRYLGRTVVLTTGTFMRGLIHIGLVNYPGGRAGDLPSIGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +      F+ GRLKTGTPARLDG+TI +D+ E Q  DE  IPFSF T++I   Q+ C +
Sbjct: 185 SDGLKDVGFEVGRLKTGTPARLDGRTIDFDRLEAQHGDENPIPFSFSTERIEQPQVPCHV 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ++H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG  T
Sbjct: 245 AYTNPKSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGRET 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +  
Sbjct: 305 VEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLVRN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAAAQGL+AGIN+A K      +   R+++YIGVMIDDL + G  E
Sbjct: 365 LYHAGQINGTSGYEEAAAQGLMAGINAALKVQGRQPLVLGRSEAYIGVMIDDLVTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL   G ++G + E     +  ++ +   + + L  L 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLREKGHEIGLVPE---SLYHTFLAKKELIEAELDRLS 481

Query: 483 LTSKNLSSTSISFKQDG-----KTRTAYE-FLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                 S+      Q+      +   +YE  L  PDF+  +L  I P+  +    V E+L
Sbjct: 482 RERLTPSAAGEELLQEWDLVGIQNAVSYEQLLRRPDFTCSDLARIYPEIMELPETVREQL 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ +       E   IP + DY ++P+LS E++EKL   +P  L QAS
Sbjct: 542 EIQIKYKGYIERQLEQVARAARLESTTIPAEMDYGTVPSLSAEVREKLVRFRPDTLGQAS 601

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA + +L I +K
Sbjct: 602 RIPGVTPAGITILSIALK 619


>gi|42520820|ref|NP_966735.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81170589|sp|Q73GE7|MNMG_WOLPM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42410560|gb|AAS14669.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 644

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 302/614 (49%), Positives = 391/614 (63%), Gaps = 25/614 (4%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  NTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++      
Sbjct: 88  AVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEH 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++F  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYNFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-Y 263
           D  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y
Sbjct: 208 DRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             DI    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q + I
Sbjct: 268 LDDI--IAPRYCPSIEVKVNKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQREMI 325

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           ++I GLE   I+RPGYA+EYDYI+P+ELF TLETKKI GL+ AGQINGTTGYEEAA QG+
Sbjct: 326 KSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKIKGLYFAGQINGTTGYEEAAGQGI 385

Query: 384 VAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           +AGIN+A   S K +     RTDSYIGVMIDDL  KGV+EPYR+FTSRAEYR+++R DNA
Sbjct: 386 IAGINAALSASEKKESFVLHRTDSYIGVMIDDLVIKGVIEPYRLFTSRAEYRLAIRSDNA 445

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G  +  +   R       ++    L   L SL +T + L S  I    DG  +
Sbjct: 446 DRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRK 505

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSL----------------VIERLQIESSYAAYT 546
           TA + LSYP+     L  I P+    +                  + E ++IE+ Y  Y 
Sbjct: 506 TALDLLSYPNIDWNKLQEIWPELSSVTRWNGKMGHTKADNRAKNEICEAVEIEAKYKPYL 565

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            RQ  + K ++ E    IP +F+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+
Sbjct: 566 IRQEADMKFLREEINTQIPINFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAI 625

Query: 607 NLLLIYIKKNTVKL 620
             +L+Y++    K+
Sbjct: 626 VSILVYLRNRKTKV 639


>gi|134302185|ref|YP_001122154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|166222935|sp|A4IYN2|MNMG_FRATW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134049962|gb|ABO47033.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 627

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/619 (49%), Positives = 406/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRLLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + RQI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    +++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHF---ISKKNAIIENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|56708268|ref|YP_170164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670739|ref|YP_667296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis FSC198]
 gi|224457388|ref|ZP_03665861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370751|ref|ZP_04986756.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875088|ref|ZP_05247798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81170542|sp|Q5NFM8|MNMG_FRATT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123359437|sp|Q14H30|MNMG_FRAT1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56604760|emb|CAG45838.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321072|emb|CAL09221.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568994|gb|EDN34648.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841087|gb|EET19523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159495|gb|ADA78886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 627

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/619 (49%), Positives = 406/619 (65%), Gaps = 12/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V 
Sbjct: 67  GGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRLLYKKAINSLINNQENLDIFQDSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN+L   
Sbjct: 127 DLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGIT 243
                F   RLKTGTP R+D +++ +   E Q  D     FSF +  KI + RQI C IT
Sbjct: 187 LRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQIPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+ 
Sbjct: 247 YTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNSI 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK I  L
Sbjct: 307 ELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETKHIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +KG  EP
Sbjct: 367 YFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITKGTKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F   I + N +    +++K+
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLSNKACELGLLSKEDQQHF---ISKKNAIIENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE++
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS
Sbjct: 544 EISAKYSGYIERQNKDIEKTATFEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL IY+KK
Sbjct: 604 RIPGITPAAISLLTIYMKK 622


>gi|126667597|ref|ZP_01738566.1| glucose-inhibited division protein A [Marinobacter sp. ELB17]
 gi|126627866|gb|EAZ98494.1| glucose-inhibited division protein A [Marinobacter sp. ELB17]
          Length = 628

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/615 (48%), Positives = 406/615 (66%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGH+G EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHSGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M R  D AGIQFRVLN +KGPAVR  R Q DR LY+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMARATDRAGIQFRVLNGRKGPAVRATRAQTDRILYKAAI-REILENQPNLTLFQQSA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +V Q        TVVLTTGTFL G+IHIG      GR GD+P+N+L  
Sbjct: 126 DDLIVENERVTGVVTQTGIRFLGKTVVLTTGTFLGGIIHIGMKNHAGGRAGDAPANALAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SFM  +  + RQ+ C IT
Sbjct: 186 RLRELPFNVGRLKTGTPPRIDARSVDFSVMQQQWGDDPAPVMSFMGSRDEHPRQVCCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETH II      S +++G+I   GPRYCPS+EDK+ RF +++ HQIF+EPEGL T 
Sbjct: 246 RTTEETHDIIRSGFDRSPMFTGNIGGVGPRYCPSLEDKVSRFADKSSHQIFVEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP +IQ + +++IPG EK +I+RPGYAIEYDY+NP++L  TLETK I GL
Sbjct: 306 ELYPNGISTSLPFDIQVRAVQSIPGFEKAHIMRPGYAIEYDYLNPQDLRHTLETKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AGIN+AR++ + D     R ++YIGV++DDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLLAGINAARQAQEKDAWYPRRDEAYIGVLVDDLITMGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F    +     RS L+   +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTDSGRELGLVDDERWSKFNAKREAIGTERSRLEGTRV 485

Query: 484 TSKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +    +   KQ  G+  T  E L  P+    ++  I  + R   ++V ++++IE 
Sbjct: 486 HPNTAAGERANQYLKQPLGRDHTLAELLRRPEIVYAHIADIA-EYRADDAVVADQVEIEI 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL +++P  + QAS+++G
Sbjct: 545 KYEGYISRQADEIERLRKNENTALPVDLDYGIIGGLSNEIKQKLGVVRPETVAQASRVQG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++ +L+++KK
Sbjct: 605 VTPAAISQILVHMKK 619


>gi|162147023|ref|YP_001601484.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|205831515|sp|A9HE13|MNMG_GLUDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161785600|emb|CAP55171.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme gid (Glucose-inhibited division protein A)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 620

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 309/618 (50%), Positives = 396/618 (64%), Gaps = 12/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA AA+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAAAAAARCGARTLLLTHRRDTIGAMSCNPAIGGIGKGHLVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM R AD AGI F++LN  KGPAV GPR QADR LYR A+Q  +    NLD+ +G   
Sbjct: 65  DGLMARAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRRAIQDLLAETANLDIAEGAAG 124

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +     + +V +D    R   VVLT GTFLRGVIHIG    PAGR+G+ P+++L  
Sbjct: 125 DLIVDDAGQAAGVVCEDGRQFRAGAVVLTAGTFLRGVIHIGHDSHPAGRVGEPPAHALGE 184

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLD  +I WD   +   D    PFS +T  I N Q+ C IT 
Sbjct: 185 RLQALGLPMGRLKTGTPARLDRTSIDWDSLAEDRGDAVPEPFSRLTQAIDNPQLSCRITA 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL---- 300
           T   TH +I E++  SA+Y G I   GPRYCPSIEDK+VRF ER+ HQIFLEPE L    
Sbjct: 245 TTPRTHALIREHLHLSAVYGGAIAGRGPRYCPSIEDKVVRFAERDSHQIFLEPEALPGNA 304

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D+VYPNGIST+LP +IQ Q I +IPGLE+  I+RPGYA+EYDY++P+ L PTLE   +
Sbjct: 305 GGDLVYPNGISTSLPADIQEQLIHSIPGLERCRIVRPGYAVEYDYVDPRALAPTLELTAL 364

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LFLAGQINGTTGYEEA AQGL+AG+N+AR++   + I   R  +Y+GVMIDDL ++GV
Sbjct: 365 PRLFLAGQINGTTGYEEAGAQGLLAGLNAARRAGGGEGIAIDRGAAYLGVMIDDLATQGV 424

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT  G+  GC+G  R   F       +       +
Sbjct: 425 SEPYRMFTSRAEYRLSLRADNADLRLTGQGIGWGCVGSARAHLFTAERDAIDTAMQRAGA 484

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFL---SYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                  L    I+   DG+ RT  + L   + PD     +  I P      S V   ++
Sbjct: 485 ESFLPDALQQAGITVSADGRRRTLLDVLATAATPD----AIARIAPWFAALPSRVSRHVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E+ Y+ Y  RQ  E ++++ E +  +P D DY  +  LS+E++E+L+  +P +   A +
Sbjct: 541 TEARYSGYLVRQAREIRQLEAETRITLPADLDYRRIGGLSSEMQERLAAARPASFSAAQR 600

Query: 598 IEGMTPAALNLLLIYIKK 615
           + G+TP+AL  LL ++++
Sbjct: 601 VPGITPSALMALLSHVRQ 618


>gi|332286173|ref|YP_004418084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pusillimonas sp. T7-7]
 gi|330430126|gb|AEC21460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pusillimonas sp. T7-7]
          Length = 638

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/624 (48%), Positives = 410/624 (65%), Gaps = 14/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA+ GAST L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   YDVIVVGGGHAGTEAALAAARTGASTLLLTHNMETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LYR+A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAYATDKAGIQFRILNSSKGPAVRATRAQADRSLYRMAIRTTLQNQPNLTIFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++  V Q     R  TVVLT GTFL G+IH+G     AGR GD P+ +L   
Sbjct: 127 DLLLEGDRVAGAVTQIGLKFRGRTVVLTAGTFLNGLIHVGLDHYSAGRAGDPPAITLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+D ++I + KTE Q  D   IP FS++ +  +   Q+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDARSIDFSKTEVQAGDRDPIPVFSYLGSASMHPEQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TN  TH II   +  S +YS  G I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL 
Sbjct: 247 HTNERTHDIIRSGLDRSPMYSDSGTIEGIGPRYCPSIEDKIHRFADKPSHQIFLEPEGLT 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNG+ST+LP +IQ   +RT+PGLE   I+RPGYAIEYDY +P+EL  TLET+ I 
Sbjct: 307 TQEIYPNGVSTSLPFDIQLALVRTLPGLENAIIMRPGYAIEYDYFDPRELSSTLETRAIK 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+AR++  L+     R ++Y+GV++DDL ++GV 
Sbjct: 367 GLFFAGQINGTTGYEEAAAQGLLAGLNAARQAQGLEGWFPKRNEAYLGVLVDDLITRGVT 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT +G  LG + ++R + F+K  ++ +     LKS 
Sbjct: 427 EPYRMFTSRAEYRLSLREDNADMRLTEMGRTLGLVDDQRWEAFSKKREDVSRETERLKST 486

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSL 531
            +  K L   ++ ++  KQ  K  +  + L  P  + + L ++  +            ++
Sbjct: 487 WINPKTLAHHTAEALLGKQLEKEHSLLDLLKRPQVTYKALMALHKEDGTLVAGPGLEDAV 546

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  YA Y  +Q  E +    +E + IP D DY ++ +LS E++++L + +P  
Sbjct: 547 AAEQVEIQIKYAGYVAKQQEEIERQLEQESQAIPPDLDYDAISSLSIEVRQRLKLSRPET 606

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS++ G+TPAA++LLLI++K+
Sbjct: 607 VGQASRVSGITPAAISLLLIHLKR 630


>gi|15603350|ref|NP_246424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431542|sp|P57945|MNMG_PASMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12721869|gb|AAK03569.1| GidA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 629

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 395/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +QENLD+ Q EV
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQENLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +++ +  +V +         V+LT GTFL G IHIG      GR GD  S  L +
Sbjct: 126 TDIILDQDRVCGVVTKMGLKFHAKAVILTAGTFLSGKIHIGLENYTGGRAGDPASVMLAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              + +    RLKTGTP R+D +TI +    KQ  DE+L  FSFM     + RQI C IT
Sbjct: 186 RLRELNLRVDRLKTGTPPRIDARTIDFSVLAKQHGDEKLPVFSFMGSVDQHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFSERNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + + ++ G+EK  II+PGYAIEYDY +P++L PTLETK I GL
Sbjct: 306 EIYPNGISTSLPFDVQMKIVNSMKGMEKARIIKPGYAIEYDYFDPRDLKPTLETKSIRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGL+AGIN+     + +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAGQGLLAGINAGLFVQEKEAWFPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E+R  RF + ++     R  L+ + L
Sbjct: 426 YRVFTSRAEYRLLLREDNADSRLTPIAHQLGLIDEKRWARFNQKMENIELERQRLRQIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ + Q L S+ P          +
Sbjct: 486 HPRSEYLDEANKVLGSPLV------REASGEDLLRRPEMNYQILTSLTPFQPAMDDQEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E    K  E   IP  FDY+ +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIARQKRHESTAIPAHFDYTVVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA+++LL+ +KK 
Sbjct: 600 QASRISGVTPAAISILLVSLKKQ 622


>gi|258543707|ref|YP_003189140.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634785|dbj|BAI00761.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637841|dbj|BAI03810.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640895|dbj|BAI06857.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643950|dbj|BAI09905.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256647005|dbj|BAI12953.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256650058|dbj|BAI15999.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256653048|dbj|BAI18982.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256656102|dbj|BAI22029.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 626

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 310/620 (50%), Positives = 408/620 (65%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+GGGHAGCEAAA AA+ GA T L+TH  +T+G+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MNKAYDVIVVGGGHAGCEAAAAAARCGAKTLLLTHHKNTVGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+M R AD AGI F++LN  KGPAV+GPR QADR LYR A+Q  + + E LD+ +
Sbjct: 61  IDALDGVMARAADRAGIHFKLLNRSKGPAVQGPRAQADRLLYRQAVQDILANTEGLDIEE 120

Query: 122 GEVAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      ++N ++ +  +         VVLTTGTFL GVIHIG    PAGR+G+ PS 
Sbjct: 121 GAVTDLICDDQNRVAGVACEGGRQWAAGAVVLTTGTFLDGVIHIGHKSQPAGRIGEQPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L +          RLKTGTPARL   TI W        D    PFS +T  ITN Q+ C
Sbjct: 181 ALASRLKNLGLRIARLKTGTPARLKRDTIDWASLAVDRGDVSPEPFSRLTKSITNPQMVC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  +TH II E++  SA+Y G I   GPRYCPSIEDK+VRF E+ GHQIFLEPE L
Sbjct: 241 GITATVQKTHDIIREHLHLSAVYGGAISGRGPRYCPSIEDKVVRFSEKTGHQIFLEPEAL 300

Query: 301 ----NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                 D+VYPNGIST+LP ++Q   I +IPGLEK  I + GYA+EYDY++P+EL  +LE
Sbjct: 301 PEHEGGDLVYPNGISTSLPADVQDAMIHSIPGLEKAVIAQYGYAVEYDYVDPRELTVSLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            KK   LFLAGQINGTTGYEEA AQGL+AG+N+AR++     +   R  +Y+GVMIDDLT
Sbjct: 361 LKKCPNLFLAGQINGTTGYEEAGAQGLLAGVNAARRAGGQKAVSLDRGKAYLGVMIDDLT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTPIG++ GCIG  R   F + +QE + L  
Sbjct: 421 TQGVSEPYRMFTSRAEYRLTLRADNADVRLTPIGLEWGCIGAERCAVFERDMQEIDQLTQ 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             +S     + L+   I   QDG+ R   E +         + ++ P  +++S      +
Sbjct: 481 KAESESWPPQALAQVGIKVAQDGRRRNLLEVMGQAVHE-DTIETLAPWVQEYSERARSYV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E+ Y+ Y  RQ  E K+++ E +   P++ D+  +  LS E++E+L   +P +   A 
Sbjct: 540 RTEARYSGYLVRQKREIKQLEAETEIRFPQNMDFRKIGGLSAEMQERLEQARPESFGAAQ 599

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TP+AL  +L Y+KK 
Sbjct: 600 RIPGITPSALMAVLAYLKKG 619


>gi|291615447|ref|YP_003525604.1| glucose inhibited division protein A [Sideroxydans lithotrophicus
           ES-1]
 gi|291585559|gb|ADE13217.1| glucose inhibited division protein A [Sideroxydans lithotrophicus
           ES-1]
          Length = 628

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 294/619 (47%), Positives = 407/619 (65%), Gaps = 6/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIVIGGGHAG EAA  +A+ G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+
Sbjct: 4   QKKFDVIVIGGGHAGTEAALASARAGCTTLLLTHNIETLGVMSCNPSIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q NL + Q 
Sbjct: 64  DALGGAMAAATDEGGIQFRILNASKGPAVRATRAQADRALYKQAIRKRLENQPNLWIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+  +  +  Q     R  TVVLTTGTFL G++H+G    PAGR GD PS  L
Sbjct: 124 PAEKLILEQGHVVGVQTQLGLSYRAKTVVLTTGTFLSGLVHVGLTNYPAGRAGDPPSIGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            ++  +    TGRLKTGTP R+DG++I +   ++Q  D  +  FSFM     + RQ+ C 
Sbjct: 184 AHNLRELGMPTGRLKTGTPPRIDGRSIDYSAMQEQHGDIPVPVFSFMGRAEQHPRQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL+
Sbjct: 244 ITQTNEQTHEIIRNGLGESPLFTGVIEGVGPRYCPSIEDKITRFAGKTSHQIFLEPEGLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+L  + Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LE+K IS
Sbjct: 304 THEIYPNGISTSLSYDTQLELVRSIKGLENAHITRPGYAIEYDYFDPRGLKTSLESKTIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AG+N+A ++ +L+  C  R ++Y+GV++DDL ++GV 
Sbjct: 364 GLFLAGQINGTTGYEEAAAQGLLAGVNAALQAKELETWCPRRDEAYLGVLVDDLITRGVS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL 477
           EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + F     K  +E   L+S 
Sbjct: 424 EPYRMFTSRAEYRLQLREDNADMRLTETGRKLGLVEDARWQAFEGKREKIARELERLKST 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +  +  K + +  +  K+  +  + Y+ L  P+ S Q+L ++       +S + E+++
Sbjct: 484 WVNPRMLDK-IDAERVLGKEIEREYSLYDLLRRPEVSYQSLMTLPGMHNPEASGISEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  RQ  E    +  E   +P D DYS++  LS E+++KL+  KP  L QA++
Sbjct: 543 ILAKYHGYIERQHDEIARQEGYETTQLPLDMDYSTVRGLSIEVRQKLNQHKPQTLGQAAR 602

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+++K+ 
Sbjct: 603 ISGVTPAAISLLLVHLKRG 621


>gi|320167248|gb|EFW44147.1| glucose-inhibited division protein A [Capsaspora owczarzaki ATCC
           30864]
          Length = 689

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 311/620 (50%), Positives = 409/620 (65%), Gaps = 11/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAG EAAA AA++GA+T L+THK  TIG MSCNP+ GG+GKG LVRE
Sbjct: 43  IGSMYDVIVVGGGHAGTEAAAAAARMGANTLLVTHKLETIGEMSCNPSFGGIGKGTLVRE 102

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGL GRV D AG+QFRVLN  +GPAV GPR Q DR+LY+  MQ  I +  NL V  
Sbjct: 103 IDALDGLCGRVCDEAGVQFRVLNQSRGPAVWGPRAQMDRDLYKQYMQDTIFTYPNLSVKA 162

Query: 122 GEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
             V       +  +  I+ IV+ +   I+   VVLTTGTFLR  I+IG    PAGR+GD 
Sbjct: 163 AAVEDLLLDESPSQPQIAGIVLANGETIKSKAVVLTTGTFLRAQINIGLECFPAGRIGDE 222

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TN 235
           P+  L  +  +F F  GRLKTGTP RL+GKTI +     Q  D   +PFSFM   +   N
Sbjct: 223 PAIGLGRTLERFGFALGRLKTGTPPRLEGKTINYSNLVPQLGDNPPLPFSFMNTTVRNAN 282

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q++C +T T+   H+II ENI  S     + +  GPRYCPS+E KI+RF ++  HQ++L
Sbjct: 283 NQLKCFMTLTSTAGHKIIRENIHLSRHVMEETR--GPRYCPSVESKILRFTDKASHQVWL 340

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT VVYPNGIST LP E+Q QF+RTIPGLE V ++RPGY +EYDYI+P++L  +L
Sbjct: 341 EPEGYNTTVVYPNGISTTLPRELQLQFLRTIPGLENVEMLRPGYGVEYDYIDPRQLRESL 400

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET+KI+ LFLAGQINGTTGYEEAA+QG++AGIN+A    +       R D Y+GV++DDL
Sbjct: 401 ETQKINRLFLAGQINGTTGYEEAASQGILAGINAALAVAEKPAFTLDRADGYLGVLVDDL 460

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFTSRAEYR+ LR DNAD RLT  G+++GC+G  R++ F    Q+   LR
Sbjct: 461 LSKGAPEPYRMFTSRAEYRLHLRSDNADARLTAKGIEVGCVGPDRKRAFETLTQQLQTLR 520

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           S L S+  + ++ ++  I    DG   +A+E L   +F +  + ++ P   KFS+ V +R
Sbjct: 521 SALNSITKSPEDWTAQGIPVAPDGTKPSAFEILDRANFDLDRVRAVVPSLPKFSAAVDQR 580

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I++ Y     +Q  +    + EE  +IP DFDY S   L  E+++ L + KP  + +A
Sbjct: 581 ITIDARYEGLLAKQASDIATYRREESTVIPFDFDYKS---LGTEVQQTLMLHKPRTIKEA 637

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S + G TP AL LLL +IK+
Sbjct: 638 SLLHGTTPTALILLLQHIKR 657


>gi|15594523|ref|NP_212312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi B31]
 gi|2688059|gb|AAC66557.1| glucose inhibited division protein A (gidA) [Borrelia burgdorferi
           B31]
          Length = 627

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 296/624 (47%), Positives = 403/624 (64%), Gaps = 8/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           IN  +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VRE
Sbjct: 5   INMDFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q
Sbjct: 65  IDALGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQ 124

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V  F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 125 DTVVDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ 
Sbjct: 185 YGLDKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K+
Sbjct: 305 FNTEEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG
Sbjct: 365 VKGLFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLK 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++
Sbjct: 485 QRRLSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I 
Sbjct: 541 VKYEGYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIP 600

Query: 600 GMTPAALNLLLIYIK--KNTVKLN 621
           G+    + +LLIY    KN V +N
Sbjct: 601 GIRSTDITVLLIYFSNPKNKVVIN 624


>gi|189426683|ref|YP_001953860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter lovleyi SZ]
 gi|189422942|gb|ACD97340.1| glucose inhibited division protein A [Geobacter lovleyi SZ]
          Length = 624

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/615 (48%), Positives = 401/615 (65%), Gaps = 9/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+      +  MSCNP+IGGL KGHLVREIDAL
Sbjct: 8   YDVIVVGAGHAGCEAALAAARMGCLTLLLNMSLDGMAVMSCNPSIGGLAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFRVLN +KGPAVR  R QAD++LYRL M+R +  Q NL V QGEV 
Sbjct: 68  GGEMAKNIDATGIQFRVLNTRKGPAVRAGRAQADKQLYRLRMKRVLEQQPNLHVKQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  +  +        TVVLTTGTF+RG+IHIG +    GR GD PS  L + 
Sbjct: 128 ALHLESGELRGVDTRSGIRFLGKTVVLTTGTFMRGLIHIGLINYAGGRAGDLPSLGLSDQ 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F+ GRLKTGTPARLDG+TI + + E Q++D+  +PFSF T++IT  Q+ C I  T
Sbjct: 188 LKALGFEVGRLKTGTPARLDGRTIDFSRLEAQYSDDPPVPFSFSTERITMPQVPCYIAYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ F+EPEGL T   
Sbjct: 248 NQRTHEIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPDKERHQTFVEPEGLETVEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP+G+ST+LP +IQ  F R++ GLE+V I+RP Y IEYDY+NP +L  TLETK I  LF 
Sbjct: 308 YPSGMSTSLPIDIQIAFYRSMVGLEQVEIMRPAYGIEYDYVNPVQLHATLETKLIKNLFH 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A K    + I   R +SYIGVM+DDL + G  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGILAGINAALKVKGREPIMLGRHESYIGVMVDDLVTLGTREPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RL  IG  +G + E     +A + ++   +R  L+ +  T 
Sbjct: 428 MFTSRAEYRLLLREDNADIRLREIGHSVGLVDE---TTYAGFCRKQGQIRDELERIRATR 484

Query: 486 KNLSSTSISF-KQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +L+    S+ K+ G     K  +  + L  P+   Q L  I   A +  S V E+++I+
Sbjct: 485 LSLNPEEKSWCKRHGCADLHKGASYEQLLRRPEIGYQQLQEIDRQAAELPSAVREQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + + ++ +E+  IP D DY ++P L++E++EKL   KP  L QA++I+
Sbjct: 545 VKYQGYIERQLEQIERVRKQEEARIPSDLDYKAVPGLTSEVREKLERFKPDTLGQAARIQ 604

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+ ++ + +K
Sbjct: 605 GVTPAAIAIISVMLK 619


>gi|118602124|ref|YP_903339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|205375713|sp|A1AVB1|MNMG_RUTMC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118567063|gb|ABL01868.1| glucose inhibited division protein A [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 624

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 297/614 (48%), Positives = 400/614 (65%), Gaps = 4/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SY VIVIGGGHAG EAA  +A++G  T LI+H   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 7   KSYSVIVIGGGHAGTEAALSSARMGVCTLLISHNIETLGQMSCNPAIGGIGKGHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G+M R  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q+NL + Q  
Sbjct: 67  AMGGIMARAIDKSGIQFRTLNASKGPAVRATRAQADRILYKAQIRYTLENQDNLSLFQQA 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + I  +V Q         V+LT+GTFL GVIHIG+     GR GD+PSN+L 
Sbjct: 127 VDDLIIEHDQIKGVVTQMGLAFMADKVILTSGTFLGGVIHIGQRNFQGGRAGDAPSNALS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
                +D    RLKTGTP RLD +T+ +   + Q  D  L  FSFM  K  + RQI C I
Sbjct: 187 GKLRSYDLRVSRLKTGTPPRLDNRTLNYSLMQVQPGDTPLPTFSFMGVKEDHPRQIPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I + +K S +++G+I+   PRYCPSIEDK+VRF ER+ HQIF+EPEGL T
Sbjct: 247 THTNEKTHDLIRDGLKDSPMFTGNIEGISPRYCPSIEDKVVRFSERDSHQIFVEPEGLTT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VYPNG+ST+L  E+Q  FIR+I G EK +IIRPGYAIEYD+ +P+ L  TLE KKISG
Sbjct: 307 NEVYPNGVSTSLSYEVQLNFIRSIKGFEKAHIIRPGYAIEYDFFDPRGLKQTLEVKKISG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+A    + D     R +SYIGVM+DDL +KG  E
Sbjct: 367 LYFAGQINGTTGYEEAAAQGLLAGVNAACAILERDAWLPKRNESYIGVMVDDLITKGANE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP    LG I E   + F    +     ++ LK+  
Sbjct: 427 PYRMFTSRAEYRLLLREDNADERLTPKARDLGLISEVCWQSFQVKYEAITQEKNRLKNTW 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERLQIES 540
           + + +  +  +  +      +  E L  P    Q + S     + F   + +I  ++ + 
Sbjct: 487 IQASDTQAGVVLNQNLNHEYSLLELLKRPKIDYQ-ILSQIESGKPFLTDATLINSIENQI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ+ E ++ +  E  ++  + DY S+ ALS+E+++KL + KP  + QAS+I+G
Sbjct: 546 KYAGYIKRQLEEIEKYRKNENTILSVNIDYDSIKALSSEVRQKLELHKPETIGQASRIQG 605

Query: 601 MTPAALNLLLIYIK 614
           +TPA++++LL+Y+K
Sbjct: 606 VTPASISILLVYLK 619


>gi|328870532|gb|EGG18906.1| Glucose inhibited division protein [Dictyostelium fasciculatum]
          Length = 724

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/629 (48%), Positives = 414/629 (65%), Gaps = 22/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A +A++GA T LIT   +TIG MSCNP+IGG+GKG+LVRE+DAL
Sbjct: 87  YDVVVIGGGHAGTEACAASARVGAQTLLITQSINTIGVMSCNPSIGGIGKGNLVREVDAL 146

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE------NLDV 119
            G+MG  AD +G QF++LN  KG AV GPR Q DRELY+ ++  +IL+        NL +
Sbjct: 147 GGVMGLAADQSGCQFKILNQSKGSAVHGPRAQIDRELYQASVH-DILAGYSHDQGGNLSI 205

Query: 120 IQGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            +  V       + EK  ++ +++ D ++I+   VV+TTGTFL GVIHIG   +PAGR+G
Sbjct: 206 REAMVDDLLLEQDGEKERVAGVILSDGTIIKTRKVVITTGTFLGGVIHIGSKMVPAGRIG 265

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KI 233
           D  +  L  +  +F F  GRLKTGTP RLDGK+I +   + Q  D    PFSFM D  K 
Sbjct: 266 DKAATKLSQTLARFGFQLGRLKTGTPPRLDGKSINYQGLQVQEGDVIPTPFSFMNDSVKY 325

Query: 234 TNRQIECGITRTNLETHRIIMENI-KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            + Q+ C +TRT  E+HRI++ENI +   + SGD K  GPRYCPSIE KI RF E   HQ
Sbjct: 326 ADNQLYCYMTRTTEESHRIVLENIDRRPTLDSGDGKGLGPRYCPSIETKIERF-EAKTHQ 384

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           I+LEPEG NTDV+YP+GIS +LPEE+Q +F++TIPGLE+VN++RPGYA+EYDY++P+EL 
Sbjct: 385 IWLEPEGYNTDVIYPSGISISLPEEVQLRFLKTIPGLEQVNMLRPGYAVEYDYVDPRELR 444

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGV 410
           PTLETKKI GL+ AGQINGTTGYEEAAAQG++AGIN++    SNK   I   R++ Y+GV
Sbjct: 445 PTLETKKIPGLYFAGQINGTTGYEEAAAQGILAGINASLSLDSNKQQMI-VDRSEGYLGV 503

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           M+DDL + GV EPYRMFTSR+EYRISLR  N+D RLT  G +  C+ + R ++F K    
Sbjct: 504 MVDDLVTLGVTEPYRMFTSRSEYRISLRAHNSDQRLTKKGYQFDCVTQDRYQQFLKKENI 563

Query: 471 YNFLRSLLKSLVLTSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--K 527
            N   + L S   + K  L    I    +GK ++ ++ L  P  +++ L  +    R   
Sbjct: 564 INDTINYLNSTFFSPKEYLEKCGIGSINNGK-KSLFDILKRPHITLETLVPLFGRERLDA 622

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +I  ++ E  Y+ Y  RQ  E +  + EE R IP   DY  +  LS E+++KLS  
Sbjct: 623 IPHHIIPVIESECQYSDYLVRQQTEIERFQKEESRAIPDSLDYYKVGQLSTEMRQKLSET 682

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P  +  AS++ G+TP  +  ++ +I+K+
Sbjct: 683 RPTTIGSASRVPGVTPTGIAAIISFIRKH 711


>gi|325983682|ref|YP_004296084.1| glucose inhibited division protein A [Nitrosomonas sp. AL212]
 gi|325533201|gb|ADZ27922.1| glucose inhibited division protein A [Nitrosomonas sp. AL212]
          Length = 627

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/620 (49%), Positives = 400/620 (64%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IV+GGGHAG EAA  AA++G  T L+TH   TIG MSCNP+IGG+GK HLV+EIDAL
Sbjct: 7   FDIIVVGGGHAGTEAALAAARMGCQTLLLTHNIETIGQMSCNPSIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  AD AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL V+Q  V 
Sbjct: 67  GGAMGMAADEAGIQFRILNSSKGPAVRATRAQADRVLYKQAIRNRVENQPNLRVMQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I    V+LT GTFL G+ HIGK    AGR GD PS +L   
Sbjct: 127 DLIIEQDRVVGVVTQLQIKIHARAVILTVGTFLAGLAHIGKTHFKAGRAGDPPSITLAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             + +F  GRLKTGTP R+DG+T+ + K  +Q  D+    FS +   I + RQI C IT 
Sbjct: 187 LREMEFPAGRLKTGTPPRIDGRTMNYAKLLEQPGDQPTPWFSLIATDIRHPRQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I + +  S ++SG I+  GPRYCPSIEDK+VRF  R  HQIFLEPEGL T  
Sbjct: 247 TNDRTHDVIRDGLVDSPLFSGKIEGIGPRYCPSIEDKVVRFSARESHQIFLEPEGLGTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+L  E+Q + I +I GLE  +I RPGYAIEYDY +P+ L  +LETK I  LF
Sbjct: 307 IYPNGISTSLSFEVQVKLIHSIAGLENAHITRPGYAIEYDYFDPRNLKRSLETKTIENLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A K  + D     R ++Y+GV++DDL + GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGVNAALKIQRRDAWVPQRNEAYLGVLVDDLVTSGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-------KYIQEYNFLRSL 477
           RMFTSRAEYR+ LR DNAD RLT  G  LG I ++R   F+       K  Q  N  R L
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTETGRNLGLIDDQRWAAFSAKQEAIEKEQQRLNSTRVL 486

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIER 535
             +L        +  +  K   +  T  E L  PD +  +L ++ P A +   ++ V+E+
Sbjct: 487 PGTL----PQQDAIRVLGKSIEREYTLTELLKRPDVTYHSLMTL-PGAGEPVTNAQVVEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ Y  Y  RQ  E       E  L+PKD DY ++  LSNE+++KL+  KP  + QA
Sbjct: 542 VEIQAKYHGYIQRQQEEVSRQAQYENTLLPKDIDYCAVKGLSNEVQQKLNQHKPETVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LLL+++K+
Sbjct: 602 SRISGVTPAAISLLLVHLKR 621


>gi|332184275|gb|AEE26529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella cf. novicida 3523]
          Length = 627

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 308/617 (49%), Positives = 404/617 (65%), Gaps = 6/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   SYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ Q  V
Sbjct: 66  MGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIFQDSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ +     R   VVLT GTFL G IHIGK+    GR GD PSN+L  
Sbjct: 126 DDLVVENNTVCGVITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSNALAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIECGI 242
                 F   RLKTGTP R+D +++ +   E Q  D     FSF +  K+ + +QI C I
Sbjct: 186 RLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDSPTPYFSFFSKGKVEHPQQIPCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGLN+
Sbjct: 246 TYTNHETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPEGLNS 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNG+ST+LP E+Q  +IR+I G E   I+RPGYAIEYD+ +P++L PTLETK I  
Sbjct: 306 IELYPNGLSTSLPFEVQCNYIRSIKGFENAFIMRPGYAIEYDFFDPRDLKPTLETKHIKN 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +KG  E
Sbjct: 366 LYFAGQINGTTGYEEAGAQGLVAGINAAISLDSDKSWYPTRADSYIGVLIDDLITKGTKE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F       N   +++K+  
Sbjct: 426 PYRMFTSRAEYRLILREDNADLRLSDKACELGLLNKEDQQLFINKKSAINENITMMKNTW 485

Query: 483 LTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQI 538
           +  +   +  +    D K TR  T ++ L  P+     L  I   +       VIE+++I
Sbjct: 486 IGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQIPELNLNLQDEAVIEQIEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y+ Y  RQ  +  +    E++ IP DF+YS +  LSNE+ +KL+  KP  L +AS+I
Sbjct: 546 SAKYSGYIERQNKDIAKSATLEQKTIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGEASRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LL IY+KK
Sbjct: 606 PGITPAAISLLTIYMKK 622


>gi|148244241|ref|YP_001218935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Vesicomyosocius okutanii HA]
 gi|166224336|sp|A5CXV2|MNMG_VESOH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146326068|dbj|BAF61211.1| glucose inhibited division protein A GidA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 621

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/614 (47%), Positives = 401/614 (65%), Gaps = 2/614 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ Y VIVIGGGHAG EAA  +A++G ST LI+H   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   SKRYLVIVIGGGHAGTEAALASARMGVSTLLISHNIETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +Q+NL + Q 
Sbjct: 64  DAMGGIMAHTIDKSGIQFRTLNASKGSAVRATRAQADRILYKSEIRYALENQDNLSLFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + + I  +V Q    +    V+LT+GTFL G+IHIG+     GR GD+PSN+L
Sbjct: 124 SVDDLIIKGDQIKGVVTQMGLALMADKVILTSGTFLGGIIHIGQRNFQGGRAGDAPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                 +D    RLKTGTP RLDG+T+ +   + Q  D  L  FSF+  K  + RQI C 
Sbjct: 184 SRKLRSYDLGVNRLKTGTPPRLDGRTLDYSLMQVQSGDIPLPTFSFIGVKEEHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I   +K S I++G+I+S GPRYCPSIEDK+VRF ER+ HQIF+EPEGL+
Sbjct: 244 ITHTNKRTHDLIRSGLKDSPIFTGNIESIGPRYCPSIEDKVVRFNERDSHQIFVEPEGLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VYPNG+ST+L  ++Q  FI +I G E   IIRPGYAIEYD+ +P+ L  TLE KKIS
Sbjct: 304 TNEVYPNGVSTSLSYKVQLDFINSIKGFENAQIIRPGYAIEYDFFDPRGLKQTLEVKKIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A    + D     R +SYIGVM+DDL +KG  
Sbjct: 364 GLYFAGQINGTTGYEEAAAQGLLAGVNAACAILEKDAWLPKRDESYIGVMVDDLITKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP   +LG I E R + F          +  LK+ 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADERLTPKAKELGLISEARWQSFQVKYNAVEQEKKRLKNT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER-LQIES 540
            + + +  + +I  +      + +E L  P    Q L  I       + + + R ++ + 
Sbjct: 484 WIQANDTQANTILNQNISHEYSLFELLKRPKVDYQILSKIESGKPFLTDITLMRVIENQI 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ++E ++ +  E  ++  + +Y+S+ ALS E+++KL + KP  + QAS+I+G
Sbjct: 544 KYAGYIKRQLVEIEKYRKNENTVLSTNINYNSIKALSTEVRQKLELHKPETIGQASRIQG 603

Query: 601 MTPAALNLLLIYIK 614
           +TPA++++LL+Y+K
Sbjct: 604 VTPASISILLVYLK 617


>gi|229845662|ref|ZP_04465786.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 6P18H1]
 gi|229811400|gb|EEP47105.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 6P18H1]
          Length = 629

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/623 (48%), Positives = 396/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSY 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVFDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + +++    R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMEKIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                    T+K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEETNKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|320174632|gb|EFW49768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae CDC 74-1112]
          Length = 629

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  DGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|281207409|gb|EFA81592.1| Glucose inhibited division protein [Polysphondylium pallidum PN500]
          Length = 721

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/626 (48%), Positives = 412/626 (65%), Gaps = 23/626 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EA A A+++GAST LIT   +TIG MSCNP+IGG+GKG+LVRE+DAL
Sbjct: 87  FDVVVIGGGHAGTEACAAASRVGASTLLITQSINTIGVMSCNPSIGGIGKGNLVREVDAL 146

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA+G QF++LN  KG AV GPR Q DR+LY+  +   +  Q+NL++ +  V 
Sbjct: 147 GGVMGLAADASGCQFKILNQSKGSAVHGPRAQIDRDLYQQEIHTLLAGQDNLNIREAMVE 206

Query: 126 G--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               +   N +  +++ D S+I+   VV+TTGTFL GVIH+G   + AGR+GD  +  L 
Sbjct: 207 DMLLDDTDNSVVGVLLNDGSVIKTKKVVITTGTFLGGVIHVGNKTVLAGRVGDRAATKLS 266

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
            +  +F F  GRLKTGTP RLDGK+I +   E Q  DE+  PFSF+ D  K  +RQ++C 
Sbjct: 267 QTLARFGFALGRLKTGTPPRLDGKSIDYTGLEIQNGDEKPTPFSFLNDTVKYRDRQLQCF 326

Query: 242 ITRTNLETHRIIMENIK-HSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRT  ++H+II++N+    A+ SG D K  GPRYCPSIE KI RF  R  HQ++LEPEG
Sbjct: 327 MTRTTEQSHQIILDNLDTRPALESGVDGKGLGPRYCPSIETKIERFQGRT-HQVWLEPEG 385

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTDV+YPNGIS +LPE++Q QF++TIPGLE V ++RPGYA+EYDY++P+EL  TLETKK
Sbjct: 386 YNTDVIYPNGISISLPEDVQLQFLKTIPGLENVVMLRPGYAVEYDYVDPRELRSTLETKK 445

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-ICFSRTDSYIGVMIDDLTSK 418
           + GL+ AGQINGTTGYEEAAAQG+VAGIN+A   +K    +   R++ YIGV+IDDL + 
Sbjct: 446 VKGLYFAGQINGTTGYEEAAAQGIVAGINAALSLDKSRSPMIVDRSEGYIGVLIDDLVTL 505

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSR+EYRISLR  N+D RLT  G +   + + R  R+A+     N   + L
Sbjct: 506 GVTEPYRMFTSRSEYRISLRAHNSDQRLTQKGFQHSSVTKERLDRYAQKESIINETMNYL 565

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI--------QNLFSICPDARKFSS 530
           K       N        +  G  ++ +E L  P  S+        +N++S  P      S
Sbjct: 566 KETKY-QPNEYLEKCGIENIGSKKSIFEILKRPHTSLALLKPLIDENVYSSIP------S 618

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           L++  ++ E  Y+ Y  RQ  E    K EE R IP+  +Y  +  LS E+K+KLS  +P 
Sbjct: 619 LIVPVIESECQYSDYLVRQQAEIDRFKREESREIPEAINYWEIGQLSTEIKQKLSEARPP 678

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            L  AS++ G+TP+ +  +L YI+KN
Sbjct: 679 TLGSASRVPGVTPSGILAILSYIRKN 704


>gi|325576882|ref|ZP_08147497.1| glucose inhibited division protein A [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161088|gb|EGC73206.1| glucose inhibited division protein A [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 629

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/617 (48%), Positives = 394/617 (63%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +  +     R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILVEQDCVCGVETKMGLKFRAKSVVLTAGTFLAGKIHIGLEHYEGGRAGDPASVTLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAYELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
             ++     +  +      +     + L  P+ +   L S+ P          +E+++I 
Sbjct: 486 HPRSEYLEEANKVLGSPLVREANGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++++L+ +KK 
Sbjct: 606 GITPAAISIILVNLKKQ 622


>gi|320193714|gb|EFW68347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli WV_060327]
          Length = 629

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARIGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK+ +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVEKDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|269468172|gb|EEZ79871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [uncultured SUP05 cluster bacterium]
          Length = 623

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/620 (48%), Positives = 398/620 (64%), Gaps = 6/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ Y VIVIGGGHAG EAA  +A++G +T LITH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   SKHYSVIVIGGGHAGTEAALASARMGVNTLLITHNIETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G M    D AGIQFR LN  KGPAVR  R QADR LY+ +++  + +QE+L + Q 
Sbjct: 64  DAMGGAMATAIDKAGIQFRTLNASKGPAVRATRAQADRVLYKASIRYILENQEDLSLFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N+I  +  Q         V+LT+GTFL G+IHIG+     GR GD+PSN+L
Sbjct: 124 AVDDLVIKDNVIKGVKTQMGLSFLADKVILTSGTFLGGMIHIGQSNFEGGRAGDAPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIEC 240
             +   +D   GRLKTGTP RLDG+TI +   + Q  D  L  FSFM  K+++   QI C
Sbjct: 184 SRTLRAYDLGVGRLKTGTPPRLDGRTIDFSVLQAQPGDTPLPTFSFM-GKLSDHPDQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH  I + +K S +Y+G+I+  GPRYCPSIEDK+VRF ER+ HQIF+EPEGL
Sbjct: 243 YITHTNEKTHDFIRDGLKDSPMYTGNIEGIGPRYCPSIEDKVVRFAERDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VYPNG+ST+LP E+Q  FI +I G E   I+RPGYAIEYD+ +P+ L  TLE KKI
Sbjct: 303 TTNEVYPNGVSTSLPYEVQVDFIHSIKGFENAKIVRPGYAIEYDFFDPRGLKQTLEVKKI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGL+ AGQINGTTGYEEAAAQGL+AG+N+A    + +     R +SYIGVM+DDL +KG 
Sbjct: 363 SGLYFAGQINGTTGYEEAAAQGLLAGVNAACSVQEKNPWHPKRDESYIGVMVDDLITKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP   +LG I + R + F K  +     +  LKS
Sbjct: 423 NEPYRMFTSRAEYRLLLREDNADERLTPKARELGLIDDARWQAFEKKYKTVAQEKQRLKS 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERLQI 538
             + + +  +            +  E L  P  S   L  I    + F     +I  ++ 
Sbjct: 483 TWIQANDTQAGETLGLSLSHEYSLLELLKRPKVSYDTLSKI-ESGKPFLTDRTLIALVEN 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ E ++ +  E   +    DY S+ ALS E+++KLS  KP  + QAS+I
Sbjct: 542 QIKYEGYIKRQLEEIEKYRKNEDTKLSGHMDYDSIKALSAEVRQKLSQYKPETIGQASRI 601

Query: 599 EGMTPAALNLLLIYIKKNTV 618
           +G+TPA++++LL+Y+K   V
Sbjct: 602 QGVTPASISILLVYLKTYKV 621


>gi|16272526|ref|NP_438740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae Rd KW20]
 gi|260581443|ref|ZP_05849255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae RdAW]
 gi|1169896|sp|P44763|MNMG_HAEIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1573570|gb|AAC22240.1| glucose inhibited division protein (gidA) [Haemophilus influenzae
           Rd KW20]
 gi|260091889|gb|EEW75840.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae RdAW]
          Length = 629

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/623 (47%), Positives = 395/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R Q+DR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQSDRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     R  +V+LT GTFL G IHIG      GR GDS S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLTFRAKSVILTAGTFLAGKIHIGLENYEGGRAGDSASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|149185269|ref|ZP_01863586.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
 gi|148831380|gb|EDL49814.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
          Length = 617

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/612 (47%), Positives = 406/612 (66%), Gaps = 2/612 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++D+IV+GGGHAG EAA VAA++GA+TAL++   + IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   RNFDIIVVGGGHAGVEAACVAARMGAATALVSFDLTKIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++GR ADAA I +R+LN  KG AV GPR QADR L+  A+Q  + SQE+L++++GE
Sbjct: 62  ALDGVIGRAADAAAIHYRMLNRSKGSAVWGPRVQADRALFHRAVQGNVKSQESLELVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E   ++ + + D S +    V+L TGTFL G +  G+ +   GR+G+  +  L 
Sbjct: 122 AASLVLEGGRVTGLALADGSALSAPAVILCTGTFLGGTLFRGEERFEGGRIGEDAARVLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   + D    RLKTGTP RLDGKTI W   E+Q +D      S ++ +  N Q+ C IT
Sbjct: 182 SQLREADLPMARLKTGTPPRLDGKTIDWAVLEEQPSDGEAWTMSSLSTQRMNPQVFCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN + H II  N+  S ++SG I + GPRYCPSIEDKI RFG+R GHQIFLEPEGL+TD
Sbjct: 242 RTNEKAHDIIRVNLDRSPLFSGAIGAAGPRYCPSIEDKIHRFGDREGHQIFLEPEGLSTD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++QH  +R + GLE+V +  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 LVYPNGISTSLPTDVQHDMLRAMKGLERVEMAVPGYAVEYDHIDPRALRSSLEVKTIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVAG+++A      + +   R++SYI VM+DDLT +GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLVAGMSAAATVLGREPVGLDRSNSYIAVMVDDLTLQGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR  NAD RLT +G++   +G  R + F+   +    + + L+   L
Sbjct: 422 YRMLTSRAEYRLRLRAANADTRLTGLGIEACLVGAERAEWFSHREERRLVIDNQLEE-EL 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            +  L    I  K D  ++   E+L     SI+ L  I        +L +E ++ ++ Y 
Sbjct: 481 HANTLIEGGIRAKADRGSQRLREWLRGGQISIEELAGIVGGIDPQDALTVEMVE-DTIYE 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +++K  E+  +P DF Y+ +P LSNE+ E+L+  +P  L  A ++ G+TP
Sbjct: 540 PYLLRQEAELRDLKAGERLRLPADFPYARVPGLSNEMIERLNKAQPETLSAAGRVPGITP 599

Query: 604 AALNLLLIYIKK 615
           AAL  LL++ ++
Sbjct: 600 AALAALLVHARR 611


>gi|224534360|ref|ZP_03674938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia spielmanii A14S]
 gi|224514462|gb|EEF84778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia spielmanii A14S]
          Length = 621

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 403/620 (65%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLSFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLSEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE+IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPEDIQQKFINSIKGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKEKRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLHNLELIKLPLDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRN 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|219684569|ref|ZP_03539512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBr]
 gi|219671931|gb|EED28985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBr]
          Length = 621

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 402/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFILNSMRNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K+I + KTE QF D  +IPFSF    +   Q+ C +T
Sbjct: 183 KTLLSLGFEMGRLKTGTPARIHKKSIDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FVAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K+++   +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVADEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRN 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|260583255|ref|ZP_05851032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae NT127]
 gi|260093708|gb|EEW77619.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae NT127]
          Length = 629

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKSAIEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|167626321|ref|YP_001676821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189039342|sp|B0TY78|MNMG_FRAP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167596322|gb|ABZ86320.1| glucose inhibited division protein A [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 627

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 307/620 (49%), Positives = 410/620 (66%), Gaps = 8/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NNTYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   +  QENLD+ Q 
Sbjct: 64  DAMGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLLNDQENLDIFQD 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  ++ +   + +   VVLT GTFL G IHIG++    GR GD PSN+L
Sbjct: 124 SVDDLVVENDTVCGVITKTGIIFKSKKVVLTVGTFLGGKIHIGQVSKEGGRAGDQPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIEC 240
                   F   RLKTGTP R+D +++ +   + Q  D     FSF +  KI + RQI C
Sbjct: 184 AARLRALPFRVDRLKTGTPPRIDSRSVDFSVMDVQHGDTPTPYFSFFSKGKIEHPRQIPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II  N+  SA+YSG I+  GPRYCPSIEDK+VRF E++ HQIF+EPEGL
Sbjct: 244 YITYTNSKTHEIITNNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFAEKDRHQIFVEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  +YPNG+ST+LP E+Q ++IR+I G E   I+RPGYAIEYD+ +P++L PTLETK I
Sbjct: 304 NSIELYPNGLSTSLPFEVQCEYIRSIKGFENAFIMRPGYAIEYDFFDPRDLKPTLETKHI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA AQGLVAGIN+A   +       +R++SY+GV+IDDL +KG 
Sbjct: 364 KNLFFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRSNSYMGVLIDDLITKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL+    +LG + ++ Q+ F       +   +++K+
Sbjct: 424 KEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLNKQDQEIFINKKTAIDENIAIMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIER 535
             +  +   +  +    D K TR  T ++ L  P+   + L  I PD   +     VIE+
Sbjct: 484 TWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPELDYKKLQQI-PDTNLKLEDESVIEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + Y+ Y  RQ  +  +I   E + IP+ FDYS +  LSNE+ +KLS  KP  L +A
Sbjct: 543 IEISAKYSGYIERQSKDIAKISTLESKTIPESFDYSQVKGLSNEVLQKLSEQKPTTLGEA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL IY+KK
Sbjct: 603 SRIPGVTPAAVSLLTIYMKK 622


>gi|301169298|emb|CBW28896.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           10810]
          Length = 629

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/623 (48%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSY 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|145640560|ref|ZP_01796144.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
 gi|145275146|gb|EDK15008.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.4-21]
          Length = 629

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 397/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                     RLKTGTP R+D +TI +D  +KQ  D  L  FSFM + +   +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILDKQHGDAVLPVFSFMGSVEDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLNRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYQPAMEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|331660085|ref|ZP_08361023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA206]
 gi|331053300|gb|EGI25333.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA206]
          Length = 629

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK+ +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVEKDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|258545473|ref|ZP_05705707.1| glucose inhibited division protein A [Cardiobacterium hominis ATCC
           15826]
 gi|258519173|gb|EEV88032.1| glucose inhibited division protein A [Cardiobacterium hominis ATCC
           15826]
          Length = 625

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/622 (47%), Positives = 401/622 (64%), Gaps = 10/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG EAA  AA++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVLVVGGGHAGVEAACAAARMGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R AD AGIQ+R+LN +KGPAVR  R QADR LY+ A++  + +Q NLD+ Q  V 
Sbjct: 67  GGIMARAADRAGIQWRILNRRKGPAVRATRAQADRILYKAAVREIVENQPNLDIFQTPVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +  Q       +  VLT GTFL G IH+G      GR GD P+N L   
Sbjct: 127 DLILEGTRIAGVKSQHQIDYYATATVLTAGTFLGGKIHVGLNSFAGGRAGDPPANELAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   R+KTGTP RLD +T+ + + E Q  D  L  FS++ +   + RQ+ C ITR
Sbjct: 187 LHDLPFALARMKTGTPPRLDARTVDYSRMEAQPGDTPLPVFSYLGNAAEHPRQVACHITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           TN  TH II   I  + +Y+G IK ++GPRYCPSIEDK++RF +++ HQIF+EPE L T+
Sbjct: 247 TNERTHDIIRAYIDQAPMYAGVIKDAFGPRYCPSIEDKVMRFADKDSHQIFIEPESLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP   Q  +I+TIPGLE+  I RPGYAIEYDY +P+ L  +LE++ I  L
Sbjct: 307 ELYPNGVSTSLPFAAQIAYIQTIPGLEQARITRPGYAIEYDYFDPQHLKHSLESRHIDNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEA AQGL+AGIN+AR++  L+     R  +Y+GV+IDDL ++G  EP
Sbjct: 367 YLAGQINGTTGYEEAGAQGLLAGINAARRARDLEPWYPEREQAYLGVLIDDLITQGTREP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT IG +LG +GE R + F++ ++     +  L+  ++
Sbjct: 427 YRMFTSRAEHRLLLREDNADARLTAIGHELGVVGEPRYRAFSEKMEAIAREQERLRHTLI 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSY 542
             ++L   S +         A E L  P+     L ++   DA      VIE++ I + Y
Sbjct: 487 RQEHLPGLSQNL-------AASELLKRPEIDYATLAALPGFDAPSLDEAVIEQIDIAAKY 539

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E  ++K      +P   DY ++  LS E+ EKL  ++P NL QA++I G+T
Sbjct: 540 AGYIERQQSEVAKLKENRAHRLPVPCDYRAIHGLSAEVAEKLDKIQPENLDQAARIPGVT 599

Query: 603 PAALNLLLIYIKKNTVKLNEIV 624
           PAAL++LLI++KK     + I 
Sbjct: 600 PAALSILLIHLKKQKTPPSPIT 621


>gi|224531719|ref|ZP_03672351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia valaisiana VS116]
 gi|224511184|gb|EEF81590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia valaisiana VS116]
          Length = 621

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 400/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++ IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FEAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRASVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +     F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF  DK+   Q+ C +T
Sbjct: 183 KTLRGLGFEMGRLKTGTPARIHKKSVNFSKTEVQFGDSDIIPFSFSNDKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S +YSG+I   GPRYCPSIEDKI++F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIIKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLENAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEDRYSRYLFKKSRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++S+  +   +   ++  Y  L  P  S+ NL  I P     S +++E+++ +  Y 
Sbjct: 483 SLKDVSNEQL---KKHVSKDFYHILKDPSVSLDNLIKIDPSLND-SKVILEQVEFDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLHNLELVKLPFDFNYEVIEGLSKEAREKFSKVQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|311281694|ref|YP_003943925.1| glucose inhibited division protein A [Enterobacter cloacae SCF1]
 gi|308750889|gb|ADO50641.1| glucose inhibited division protein A [Enterobacter cloacae SCF1]
          Length = 629

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSISLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  L  FSFM +   + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDTPLPVFSFMGNAAQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +    SR  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPSRAQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAMGRELGLVDDARWARFNEKLESIERERQRLKSAWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
               ++  ++        +  +  + L  P+ + + L  + P A     +   E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFAPGLEDVQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|110835598|ref|YP_694457.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax borkumensis SK2]
 gi|122959208|sp|Q0VKW3|MNMG_ALCBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110648709|emb|CAL18185.1| glucose-inhibited division protein A [Alcanivorax borkumensis SK2]
          Length = 631

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/620 (48%), Positives = 395/620 (63%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ + VIVIGGGHAG EAA  +A++G ST L+TH   T+G MSCNPAIGG+GK HLVRE
Sbjct: 3   FSQRFGVIVIGGGHAGTEAALASARMGVSTLLLTHNIETLGQMSCNPAIGGIGKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D  GIQFRVLN +KGPAVR  R QADRELY+ A++  + +Q NL + Q
Sbjct: 63  IDALGGAMGRATDKGGIQFRVLNARKGPAVRATRAQADRELYKAAIRGTLENQPNLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V           VVLT GTFL GVIHIG      GR GD PSN+
Sbjct: 123 QAVDDLVVENGRCVGVVTNMGLRFMADAVVLTAGTFLGGVIHIGLDNHQGGRAGDQPSNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIE 239
           L     +  F   RLKTGTP R+DGK++ +   E+Q+ D  L   S++  K+    +Q+ 
Sbjct: 183 LACRLRELPFRVDRLKTGTPPRIDGKSVDFSVMEEQWGDNPLPVMSYL-GKVEEHPQQVC 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I   GPRYCPSIEDK+ R+ +++ HQIF+EPEG
Sbjct: 242 CYITHTNAQTHDIIRSGFDRSPMFTGVIDGVGPRYCPSIEDKVNRYPDKDSHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYDY NP++L  +LET+ 
Sbjct: 302 LNTHELYPNGISTSLPFDVQLQAVRSIRGFENAHITRPGYAIEYDYFNPQDLKHSLETQH 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEA AQGL+AG+N+AR S   D     R ++YIGV++DDL + G
Sbjct: 362 MPGLFFAGQINGTTGYEEAGAQGLLAGLNAARLSQGKDAWTPRRDEAYIGVLVDDLITMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F             LK
Sbjct: 422 TQEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVGDERWAAFNAKRDGMASEEQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +  K   + +++   +      Y   + L  P+ +  NL      A +  S VIE++
Sbjct: 482 TTWVRPKTPEAEAVNALIEKPLTHEYNLLDLLKRPELTYANLAEAVALADRPDSAVIEQM 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + YA Y  RQ  E ++++  E   +P +FDY  +  LSNE+K+KLS ++P  L QA 
Sbjct: 542 EILAKYAGYIDRQADEIEKLRAAETTALPVEFDYGQVKGLSNEVKQKLSEIRPQTLGQAG 601

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA++LL+IY+KK+
Sbjct: 602 RIPGVTPAAISLLMIYLKKH 621


>gi|224585669|ref|YP_002639468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|254811518|sp|C0Q2P1|MNMG_SALPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|224470197|gb|ACN48027.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 629

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMTAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|218249586|ref|YP_002374706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi ZS7]
 gi|223889242|ref|ZP_03623830.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 64b]
 gi|226321496|ref|ZP_03797022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi Bol26]
 gi|1707903|sp|P53362|MNMG_BORBU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704791|sp|B7J1B1|MNMG_BORBZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1200212|emb|CAA78149.1| gidA [Borrelia burgdorferi]
 gi|2689170|emb|CAA06005.1| glucose inhibited division protein A [Borrelia burgdorferi]
 gi|218164774|gb|ACK74835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi ZS7]
 gi|223885275|gb|EEF56377.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 64b]
 gi|226232685|gb|EEH31438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi Bol26]
          Length = 621

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 401/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|148827804|ref|YP_001292557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittGG]
 gi|166222938|sp|A5UHB8|MNMG_HAEIG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148719046|gb|ABR00174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittGG]
          Length = 629

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/622 (48%), Positives = 395/622 (63%), Gaps = 17/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVNRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDY+ +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYNKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA++++L+ +KK
Sbjct: 600 QASRISGITPAAISIILVNLKK 621


>gi|225552148|ref|ZP_03773088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia sp. SV1]
 gi|225371146|gb|EEH00576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia sp. SV1]
          Length = 621

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 401/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLGD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|319775496|ref|YP_004137984.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3047]
 gi|329122463|ref|ZP_08251049.1| glucose inhibited division protein A [Haemophilus aegyptius ATCC
           11116]
 gi|317450087|emb|CBY86301.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3047]
 gi|327473217|gb|EGF18638.1| glucose inhibited division protein A [Haemophilus aegyptius ATCC
           11116]
          Length = 629

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/623 (47%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     R  +V+LT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLTFRAKSVILTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILTKQHGDEVLPMFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGMIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|91213268|ref|YP_543254.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UTI89]
 gi|117626012|ref|YP_859335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli APEC O1]
 gi|218560816|ref|YP_002393729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli S88]
 gi|237703542|ref|ZP_04534023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 3_2_53FAA]
 gi|122421808|sp|Q1R4J1|MNMG_ECOUT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222932|sp|A1AHS1|MNMG_ECOK1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704792|sp|B7MGG1|MNMG_ECO45 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91074842|gb|ABE09723.1| glucose-inhibited division protein A [Escherichia coli UTI89]
 gi|115515136|gb|ABJ03211.1| glucose-inhibited division protein A [Escherichia coli APEC O1]
 gi|218367585|emb|CAR05369.1| glucose-inhibited cell-division protein [Escherichia coli S88]
 gi|226902806|gb|EEH89065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 3_2_53FAA]
 gi|294493839|gb|ADE92595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli IHE3034]
 gi|307628815|gb|ADN73119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UM146]
 gi|315285542|gb|EFU44984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 110-3]
 gi|323949984|gb|EGB45868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H252]
 gi|323954964|gb|EGB50742.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H263]
          Length = 629

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFAERNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|15804341|ref|NP_290380.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 EDL933]
 gi|15833937|ref|NP_312710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. Sakai]
 gi|168753643|ref|ZP_02778650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4401]
 gi|168786584|ref|ZP_02811591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC869]
 gi|195936368|ref|ZP_03081750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4024]
 gi|208807342|ref|ZP_03249679.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814423|ref|ZP_03255752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4045]
 gi|209400287|ref|YP_002273269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326532|ref|ZP_03442616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795747|ref|YP_003080584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14359]
 gi|261225898|ref|ZP_05940179.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258943|ref|ZP_05951476.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285165|ref|YP_003501983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Escherichia coli O55:H7 str. CB9615]
 gi|21263660|sp|Q8XAY0|MNMG_ECO57 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238058367|sp|B5YXE5|MNMG_ECO5E RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12518598|gb|AAG58944.1|AE005605_12 glucose-inhibited division; chromosome replication [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364158|dbj|BAB38106.1| glucose-inhibited division protein GidA [Escherichia coli O157:H7
           str. Sakai]
 gi|189358928|gb|EDU77347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4401]
 gi|189373258|gb|EDU91674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC869]
 gi|208727143|gb|EDZ76744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735700|gb|EDZ84387.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4045]
 gi|209161687|gb|ACI39120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4115]
 gi|209753798|gb|ACI75206.1| MioC protein [Escherichia coli]
 gi|209753800|gb|ACI75207.1| MioC protein [Escherichia coli]
 gi|209753802|gb|ACI75208.1| MioC protein [Escherichia coli]
 gi|209753804|gb|ACI75209.1| MioC protein [Escherichia coli]
 gi|209753806|gb|ACI75210.1| MioC protein [Escherichia coli]
 gi|217322753|gb|EEC31177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595147|gb|ACT74508.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. TW14359]
 gi|290765038|gb|ADD58999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Escherichia coli O55:H7 str. CB9615]
 gi|320191155|gb|EFW65805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639469|gb|EFX09084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. G5101]
 gi|320644909|gb|EFX13945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H- str. 493-89]
 gi|320650175|gb|EFX18671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H- str. H 2687]
 gi|320655524|gb|EFX23459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661147|gb|EFX28583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666276|gb|EFX33282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326341577|gb|EGD65366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. 1125]
          Length = 629

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|332289277|ref|YP_004420129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gallibacterium anatis UMN179]
 gi|330432173|gb|AEC17232.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gallibacterium anatis UMN179]
          Length = 629

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/617 (47%), Positives = 390/617 (63%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EAA   A++G  T LITH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYDVIVVGGGHAGTEAALAPARMGLKTLLITHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  +  Q NLD+ Q EV
Sbjct: 66  LGGLMAHATDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALEKQPNLDLFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +S +  +     +   VVLT GTFL G IHIG      GR GD  S  L  
Sbjct: 126 TDILIENGHVSGVSTKMGLTFKAKAVVLTAGTFLAGKIHIGLDHYEGGRAGDPASVRLAE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                D    RLKTGTP RLD +TI +   ++Q  DE L  FS+M     + +Q+ C IT
Sbjct: 186 RLRDLDLRVARLKTGTPPRLDARTIDFSVLKQQHGDEILPVFSYMGSVDEHPQQVPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TNL+TH II  N+  S +Y+G I+  GPRYCPSIEDK++RFG+RNGHQIFLEPEGL ++
Sbjct: 246 HTNLKTHDIIRANLDRSPMYTGIIEGVGPRYCPSIEDKVMRFGDRNGHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYD+ +P++L P+LETK I+GL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMQGLENARIVKPGYAIEYDFFDPRDLKPSLETKSINGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AG+N+       +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGILAGLNAGLHVQDKEAWYPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ + +
Sbjct: 426 YRVFTSRAEYRLLLREDNADLRLTAIGRELGLVDDARWARFNQKLENIELERQRLRQIWI 485

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
             ++     ++   +    +     + L  P+   + L  + P          +E+++I 
Sbjct: 486 HPRSEYLDEVNAVLNSPLMREANGEDLLRRPEMDYEKLCQLTPFQPAMQDKEAVEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDYS++  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQNEEIERHKRHENTLIPAEFDYSAVVGLSNEVRSKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+Y+KK 
Sbjct: 606 GITPAAISILLVYLKKQ 622


>gi|195941909|ref|ZP_03087291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 80a]
          Length = 621

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 400/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLND-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|145633461|ref|ZP_01789190.1| glucose-inhibited division protein A [Haemophilus influenzae 3655]
 gi|144985830|gb|EDJ92438.1| glucose-inhibited division protein A [Haemophilus influenzae 3655]
          Length = 629

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSY 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIELERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAIEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|215489079|ref|YP_002331510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312967849|ref|ZP_07782061.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 2362-75]
 gi|254811510|sp|B7UMK6|MNMG_ECO27 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|215267151|emb|CAS11599.1| glucose-inhibited cell-division protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287410|gb|EFR15318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 2362-75]
          Length = 629

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|326340511|gb|EGD64310.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. 1044]
          Length = 629

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYRGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|216264667|ref|ZP_03436659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 156a]
 gi|224532820|ref|ZP_03673435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi WI91-23]
 gi|224534095|ref|ZP_03674678.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi CA-11.2a]
 gi|215981140|gb|EEC21947.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 156a]
 gi|224512209|gb|EEF82595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi WI91-23]
 gi|224512794|gb|EEF83162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi CA-11.2a]
 gi|312148349|gb|ADQ31008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi JD1]
          Length = 621

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 400/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|319897901|ref|YP_004136098.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3031]
 gi|317433407|emb|CBY81788.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3031]
          Length = 629

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/623 (47%), Positives = 395/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+++ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRNIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|145637945|ref|ZP_01793586.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittHH]
 gi|145268859|gb|EDK08821.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittHH]
          Length = 629

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 397/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 IDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM + +   +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILTKQHGDEVLPVFSFMGSVEDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF K ++     R  L+++ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNKKMENIEQERQRLRNIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|323965809|gb|EGB61260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M863]
 gi|327250893|gb|EGE62595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli STEC_7v]
          Length = 629

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L  + P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTMLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|224510581|pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510582|pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510583|pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510584|pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
          Length = 651

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 29  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 89  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 148

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 149 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 208

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 209 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 268

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 269 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 328

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 329 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 388

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 389 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 448

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 449 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 508

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 509 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 568

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 569 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 628

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 629 VTPAAISILLVWLKKQ 644


>gi|192988502|pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
          Length = 649

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 27  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 87  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 146

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 147 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 206

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 207 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 266

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 267 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 326

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 327 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 386

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 387 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 446

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 447 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 506

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 507 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 566

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 567 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 626

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 627 VTPAAISILLVWLKKQ 642


>gi|163796497|ref|ZP_02190457.1| Glucose-inhibited division protein A subfamily [alpha
           proteobacterium BAL199]
 gi|159178347|gb|EDP62891.1| Glucose-inhibited division protein A subfamily [alpha
           proteobacterium BAL199]
          Length = 635

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 309/611 (50%), Positives = 408/611 (66%), Gaps = 3/611 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAAA AA++GA T L+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 10  YDVIVVGGGHAGCEAAAAAARIGARTLLLTHRIDTIGVMSCNPAIGGLGKGHLVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
           DG+MGR  D +GIQFRVLN  KGPAVRGPR QADR+LY++A+  EIL++ E L +  G V
Sbjct: 70  DGIMGRAIDRSGIQFRVLNRSKGPAVRGPRAQADRKLYKIAIA-EILAEFECLTIEAGAV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                       + + D S  R   VVLTTGTFLRG IH+G+ + PAGR+GD P+  L  
Sbjct: 129 EDLIVSGGRCLGVRLADGSERRSGAVVLTTGTFLRGEIHLGEERTPAGRVGDGPAVGLAQ 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F  GRLKTGTP RLDG+TI W   + Q  D    PFS +T++IT  Q  C IT 
Sbjct: 189 TLEHAGFSLGRLKTGTPPRLDGRTIDWSGLDAQDGDNPPEPFSTLTERITVPQTVCHITY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+   H +I  N+  + +YSG I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   
Sbjct: 249 TSEIAHELIRANLHRAPMYSGQISGTGPRYCPSIEDKVVRFADKPRHQIFLEPEGLDDPT 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + +IPGLE+  I++ GYAIEYDY++P+EL P L+T++I GL+
Sbjct: 309 VYPNGISTSLPRDVQDAVVASIPGLERAGILQHGYAIEYDYVDPRELTPALQTRRIPGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKL-DCICFSRTDSYIGVMIDDLTSKGVLEP 423
           LAGQINGTTGYEEAA QGL+AG N+A  +    +     R D YIGVM+DDL S+G  EP
Sbjct: 369 LAGQINGTTGYEEAAGQGLIAGANAALAAGGATESFAVDRADGYIGVMVDDLISRGAPEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G   G +G+ R   +    +  +  R  L++L  
Sbjct: 429 YRMFTSRAEYRLRLRADNADQRLTELGRNAGLVGQARWLAYCAKREALSVSRETLQNLAG 488

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L    I   QDG+ R A++ L +   S + + +  P+A      ++++L IE+ YA
Sbjct: 489 TPPELGRRGIPVNQDGQRRRAWDLLGHAGVSREQILAAWPEAAAIPVAILDQLAIEALYA 548

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  + +  + +E  ++P+D D  S+ +LS E+++ L   +P  L QA+++ G+TP
Sbjct: 549 SYLERQDSDIQAFRRDEALMLPEDLDPGSIGSLSTEIRDILRHARPRTLGQAARLPGVTP 608

Query: 604 AALNLLLIYIK 614
           AA   LL ++K
Sbjct: 609 AATLALLRHVK 619


>gi|323975191|gb|EGB70295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TW10509]
          Length = 629

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L  + P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTMLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|260870475|ref|YP_003236877.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O111:H- str. 11128]
 gi|257766831|dbj|BAI38326.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O111:H- str. 11128]
 gi|323177761|gb|EFZ63345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1180]
          Length = 629

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLERSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|68249206|ref|YP_248318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 86-028NP]
 gi|81170546|sp|Q4QMT9|MNMG_HAEI8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68057405|gb|AAX87658.1| glucose inhibited division protein A [Haemophilus influenzae
           86-028NP]
          Length = 629

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 395/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSY 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + +++    R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMEKIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAIEDREAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|118582020|ref|YP_903270.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Pelobacter propionicus DSM 2379]
 gi|205375703|sp|A1AV42|MNMG_PELPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118504730|gb|ABL01213.1| glucose inhibited division protein A [Pelobacter propionicus DSM
           2379]
          Length = 628

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 409/617 (66%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     I  MSCNP+IGGL KGHLV+EIDAL
Sbjct: 8   YDVIVVGAGHAGCEAALAAARMGCRTLLLTINLDAIALMSCNPSIGGLAKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  DA GIQFR+LN +KGPAVR  R QAD++LYRL M+R + +Q+NL + QGEV 
Sbjct: 68  GGEMARNIDATGIQFRILNTRKGPAVRASRAQADKQLYRLRMKRVLENQDNLHLKQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + +++  +  +        TVVLTTGTF+RG+IHIG      GR GD PS  L + 
Sbjct: 128 ALYCDGSVVRGVDTRSGIRFLGKTVVLTTGTFMRGLIHIGLTHYEGGRAGDLPSIGLSDQ 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGTPARLDG+TI + + E Q  D    PFSF T++IT RQ+ C I  T
Sbjct: 188 LKQLGLQVGRLKTGTPARLDGRTIDFSRLEPQHGDNPPQPFSFSTERITMRQVPCHIAYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF +++ HQ F+EPEGL+T  +
Sbjct: 248 NERSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPDKDRHQAFIEPEGLDTVEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP+G+ST+LP +IQ  F R++ GLE+V I+RP Y IEYDY++P +L  +LETK I+ L+ 
Sbjct: 308 YPSGMSTSLPIDIQIAFYRSMEGLERVEIMRPAYGIEYDYVDPIQLHTSLETKAITNLYH 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG+VAGIN+A ++   + +  SR++SYIGVMIDDL + G  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIVAGINAALRTRGEEPLILSRSESYIGVMIDDLITLGTKEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RL  IG ++G + +     +  Y+++ + +++  + L  T 
Sbjct: 428 MFTSRAEYRLLLREDNADQRLREIGYRVGLVSD---AEYEGYLRKRDMIQAERERLAATR 484

Query: 486 KNLSSTSISF-----KQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            ++S     +       D +  T+YE  L  P+ +  +L S    +R+  S+V E+++I+
Sbjct: 485 ISMSQAEEEYFTARGLPDLQKGTSYEQLLRRPEITYDDLLSFDTVSRETPSVVREQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + +     E   +P D DY+++  L+ E+KEKL+ ++P  L QAS+I 
Sbjct: 545 IKYQGYIERQLEQIRRSAKLENTPLPTDMDYAAINGLTTEVKEKLTKVRPDTLGQASRIP 604

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++L I +K +
Sbjct: 605 GVTPAAVSVLSIALKAH 621


>gi|114322027|ref|YP_743710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310595|sp|Q0A4L7|MNMG_ALHEH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114228421|gb|ABI58220.1| glucose inhibited division protein A [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 629

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/621 (47%), Positives = 397/621 (63%), Gaps = 15/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GKGHLVREIDAL
Sbjct: 7   FDVIVVGGGHAGTEAAMAAARIGARTLLLTHSIETVGQMSCNPAIGGIGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R AD  GIQFR LN +KGPAVR  R QADR+LYR A++R + +Q  L + Q  V 
Sbjct: 67  GGIMARAADRGGIQFRTLNSRKGPAVRATRAQADRQLYRQAIRRAVENQPRLALFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       R   VVLT GTFL G IHIG+     GR GD  +N+L   
Sbjct: 127 DLIVEGGRVTGVVTGMGLRFRAPAVVLTVGTFLGGRIHIGESNYGGGRAGDPAANALAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP RLDG+TI W +  +Q  D+    FSF+     +  Q+ C I  
Sbjct: 187 LRELPFQVDRLKTGTPPRLDGRTIDWARLTEQPGDDPAPVFSFLGRPDEHPAQVPCHIAH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+T  
Sbjct: 247 TRPETHDIIRGALDRSPMYSGTIEGVGPRYCPSIEDKVVRFADKGSHQIFLEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q++ +R+IPGLE+  I+RPGYAIEYD+ +P+ L PTLET+ + GL+
Sbjct: 307 VYPNGISTSLPFDVQYELVRSIPGLEQARIVRPGYAIEYDFFDPRGLHPTLETRHLEGLW 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A +    +     R  +Y+GV++DDL ++G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAALRVQGREPWYPRRDQAYLGVLVDDLITRGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG  LG + + R +RF    +     ++ L + ++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRDLGLVDDERWRRFNAKREALEREQARLAATLIR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI------CPDARKFSSLVIER 535
             +L          G  R      E L  PD    +L  +       PDA      V+E+
Sbjct: 487 PGDLPDALARQVLGGPLRKEQRLEELLRRPDVGYADLMRLPGAGDPVPDAE-----VVEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+I++ YA Y  RQ  E    +  E+  +P+   Y  +  LS+E++EKL+  +P  + QA
Sbjct: 542 LEIQARYAGYLERQHDEVARARRHEQLPLPEGLAYDRVAGLSSEVREKLAAHRPATVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           ++I G+TPAA++LLL+++++ 
Sbjct: 602 ARIPGVTPAAVSLLLVHLRRQ 622


>gi|193071616|ref|ZP_03052522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E110019]
 gi|192955080|gb|EDV85577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E110019]
          Length = 629

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|300950658|ref|ZP_07164552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|300958750|ref|ZP_07170866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300314604|gb|EFJ64388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300450028|gb|EFK13648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|323939196|gb|EGB35409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E482]
          Length = 629

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPSLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|170766699|ref|ZP_02901152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia albertii TW07627]
 gi|170124137|gb|EDS93068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia albertii TW07627]
          Length = 629

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNVAQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTTPLSREASGEDLLRRPEMTYEKLTSLVPFAPALRDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|300902977|ref|ZP_07120920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|301305610|ref|ZP_07211700.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|300404972|gb|EFJ88510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|300839118|gb|EFK66878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|315254566|gb|EFU34534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 85-1]
          Length = 629

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHYVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|145635868|ref|ZP_01791558.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittAA]
 gi|148825138|ref|YP_001289891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittEE]
 gi|166222937|sp|A5U9Q7|MNMG_HAEIE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145266880|gb|EDK06894.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittAA]
 gi|148715298|gb|ABQ97508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittEE]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/623 (47%), Positives = 396/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPMFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 YTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L+++ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRNIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS + +LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSSLSNEVRAKLEQHRPVSIS 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|221217547|ref|ZP_03589017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 72a]
 gi|225548536|ref|ZP_03769584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 94a]
 gi|225549808|ref|ZP_03770772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 118a]
 gi|221192610|gb|EEE18827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 72a]
 gi|225369616|gb|EEG99065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 118a]
 gi|225370799|gb|EEH00234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 94a]
          Length = 621

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 399/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 GLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|111115000|ref|YP_709618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii PKo]
 gi|123145773|sp|Q0SNY6|MNMG_BORAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110890274|gb|ABH01442.1| glucose inhibited division protein A [Borrelia afzelii PKo]
          Length = 621

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 401/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALAISRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHRKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE +Q + I +I GLE   I RPGYA+EYDYINP EL+P+LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENVQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPSLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K+++   +   +    +  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDIADEQL---KKHVNKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDIKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLHNLELVKLPFDFNYGIIEGLSREAREKFSKVQPATLAQASRIPGIRN 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|293413191|ref|ZP_06655857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B354]
 gi|291468324|gb|EFF10819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B354]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDDQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|16131609|ref|NP_418197.1| 5-methylaminomethyl-2-thiouridine modification at tRNA U34
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26250487|ref|NP_756527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli CFT073]
 gi|82546099|ref|YP_410046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii Sb227]
 gi|89110266|ref|AP_004046.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. W3110]
 gi|110644082|ref|YP_671812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 536]
 gi|157155354|ref|YP_001465231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E24377A]
 gi|157163223|ref|YP_001460541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli HS]
 gi|170022222|ref|YP_001727176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli ATCC 8739]
 gi|170083242|ref|YP_001732562.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188493426|ref|ZP_03000696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Escherichia coli 53638]
 gi|191170517|ref|ZP_03032070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli F11]
 gi|193063784|ref|ZP_03044871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E22]
 gi|194428129|ref|ZP_03060673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B171]
 gi|209921222|ref|YP_002295306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SE11]
 gi|218556312|ref|YP_002389226.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Escherichia coli IAI1]
 gi|218692029|ref|YP_002400241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli ED1a]
 gi|218697467|ref|YP_002405134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 55989]
 gi|218702591|ref|YP_002410220.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli IAI39]
 gi|218707387|ref|YP_002414906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UMN026]
 gi|227883963|ref|ZP_04001768.1| glucose inhibited cell division protein A [Escherichia coli 83972]
 gi|238902832|ref|YP_002928628.1| glucose-inhibited cell-division protein [Escherichia coli BW2952]
 gi|254038960|ref|ZP_04873012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 1_1_43]
 gi|256025528|ref|ZP_05439393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia sp. 4_1_40B]
 gi|260846474|ref|YP_003224252.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O103:H2 str. 12009]
 gi|293407378|ref|ZP_06651300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1412]
 gi|293417214|ref|ZP_06659841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B185]
 gi|293464067|ref|ZP_06664481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B088]
 gi|298383120|ref|ZP_06992715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1302]
 gi|300815004|ref|ZP_07095229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300824549|ref|ZP_07104659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300896070|ref|ZP_07114629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|300916390|ref|ZP_07133130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
 gi|300925571|ref|ZP_07141444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300983872|ref|ZP_07176780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
 gi|300984345|ref|ZP_07176951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|301020855|ref|ZP_07184916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
 gi|301047564|ref|ZP_07194636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|301324958|ref|ZP_07218513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|301644417|ref|ZP_07244416.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|306815907|ref|ZP_07450045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli NC101]
 gi|307140441|ref|ZP_07499797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|307313187|ref|ZP_07592812.1| glucose inhibited division protein A [Escherichia coli W]
 gi|309795702|ref|ZP_07690117.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
 gi|312971967|ref|ZP_07786141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1827-70]
 gi|331644468|ref|ZP_08345597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|331649567|ref|ZP_08350653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M605]
 gi|331655403|ref|ZP_08356402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M718]
 gi|331665395|ref|ZP_08366296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA143]
 gi|331670592|ref|ZP_08371431.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA271]
 gi|331675225|ref|ZP_08375978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA280]
 gi|331679845|ref|ZP_08380515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H591]
 gi|331685468|ref|ZP_08386054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H299]
 gi|62288115|sp|P0A6U3|MNMG_ECOLI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62288116|sp|P0A6U4|MNMG_ECOL6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123343409|sp|Q0TAW8|MNMG_ECOL5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123558241|sp|Q31UP0|MNMG_SHIBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166989735|sp|A7ZTV2|MNMG_ECO24 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166989736|sp|A8A6K4|MNMG_ECOHS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039341|sp|B1IWZ7|MNMG_ECOLC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831506|sp|B1X9W9|MNMG_ECODH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704793|sp|B7NR43|MNMG_ECO7I RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704794|sp|B7M597|MNMG_ECO8A RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704795|sp|B7NF57|MNMG_ECOLU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238058368|sp|B6I3X8|MNMG_ECOSE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811511|sp|B7L889|MNMG_ECO55 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811512|sp|B7N2I0|MNMG_ECO81 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|259495846|sp|C4ZZ19|MNMG_ECOBW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|26110917|gb|AAN83101.1|AE016769_216 Glucose inhibited division protein A [Escherichia coli CFT073]
 gi|2367273|gb|AAC76764.1| 5-methylaminomethyl-2-thiouridine modification at tRNA U34
           [Escherichia coli str. K-12 substr. MG1655]
 gi|81247510|gb|ABB68218.1| GidA [Shigella boydii Sb227]
 gi|85676297|dbj|BAE77547.1| glucose-inhibited cell-division protein [Escherichia coli str. K12
           substr. W3110]
 gi|110345674|gb|ABG71911.1| glucose inhibited division protein A [Escherichia coli 536]
 gi|157068903|gb|ABV08158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli HS]
 gi|157077384|gb|ABV17092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E24377A]
 gi|169757150|gb|ACA79849.1| glucose inhibited division protein A [Escherichia coli ATCC 8739]
 gi|169891077|gb|ACB04784.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188488625|gb|EDU63728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Escherichia coli 53638]
 gi|190909325|gb|EDV68911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli F11]
 gi|192930499|gb|EDV83106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E22]
 gi|194413887|gb|EDX30165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B171]
 gi|209914481|dbj|BAG79555.1| glucose inhibited division protein A [Escherichia coli SE11]
 gi|218354199|emb|CAV00833.1| glucose-inhibited cell-division protein [Escherichia coli 55989]
 gi|218363081|emb|CAR00719.1| glucose-inhibited cell-division protein [Escherichia coli IAI1]
 gi|218372577|emb|CAR20451.1| glucose-inhibited cell-division protein [Escherichia coli IAI39]
 gi|218429593|emb|CAR10551.2| glucose-inhibited cell-division protein [Escherichia coli ED1a]
 gi|218434484|emb|CAR15411.1| glucose-inhibited cell-division protein [Escherichia coli UMN026]
 gi|222035454|emb|CAP78199.1| tRNA uridine 5-carboxymethylaminomethyl modification [Escherichia
           coli LF82]
 gi|226838925|gb|EEH70952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 1_1_43]
 gi|227839241|gb|EEJ49707.1| glucose inhibited cell division protein A [Escherichia coli 83972]
 gi|238861321|gb|ACR63319.1| glucose-inhibited cell-division protein [Escherichia coli BW2952]
 gi|257761621|dbj|BAI33118.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O103:H2 str. 12009]
 gi|260451402|gb|ACX41824.1| glucose inhibited division protein A [Escherichia coli DH1]
 gi|281180799|dbj|BAI57129.1| glucose inhibited division protein A [Escherichia coli SE15]
 gi|284923855|emb|CBG36954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Escherichia coli
           042]
 gi|291321699|gb|EFE61135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B088]
 gi|291425669|gb|EFE98705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1412]
 gi|291431245|gb|EFF04238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B185]
 gi|298276956|gb|EFI18474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1302]
 gi|300300550|gb|EFJ56935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|300306827|gb|EFJ61347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
 gi|300360056|gb|EFJ75926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|300398425|gb|EFJ81963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
 gi|300408381|gb|EFJ91919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|300416294|gb|EFJ99604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
 gi|300418345|gb|EFK01656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300522950|gb|EFK44019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300531896|gb|EFK52958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300848129|gb|EFK75889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|301077256|gb|EFK92062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|305850303|gb|EFM50760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli NC101]
 gi|306906870|gb|EFN37379.1| glucose inhibited division protein A [Escherichia coli W]
 gi|307555880|gb|ADN48655.1| glucose-inhibited division protein A [Escherichia coli ABU 83972]
 gi|308120581|gb|EFO57843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
 gi|309704189|emb|CBJ03536.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Escherichia coli
           ETEC H10407]
 gi|310334344|gb|EFQ00549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1827-70]
 gi|312948307|gb|ADR29134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063051|gb|ADT77378.1| glucose-inhibited cell-division protein [Escherichia coli W]
 gi|315138326|dbj|BAJ45485.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli DH1]
 gi|315292827|gb|EFU52179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 153-1]
 gi|315296885|gb|EFU56174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 16-3]
 gi|315618551|gb|EFU99137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 3431]
 gi|320186276|gb|EFW61012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri CDC 796-83]
 gi|320201226|gb|EFW75807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli EC4100B]
 gi|323161007|gb|EFZ46926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E128010]
 gi|323173366|gb|EFZ58995.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli LT-68]
 gi|323380887|gb|ADX53155.1| glucose inhibited division protein A [Escherichia coli KO11]
 gi|323934908|gb|EGB31286.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E1520]
 gi|323944217|gb|EGB40297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H120]
 gi|324007991|gb|EGB77210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 57-2]
 gi|324012779|gb|EGB81998.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 60-1]
 gi|324018461|gb|EGB87680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 117-3]
 gi|324115903|gb|EGC09829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E1167]
 gi|330908054|gb|EGH36573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli AA86]
 gi|331036762|gb|EGI08988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|331042065|gb|EGI14209.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M605]
 gi|331047418|gb|EGI19496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M718]
 gi|331057905|gb|EGI29891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA143]
 gi|331062654|gb|EGI34574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA271]
 gi|331067670|gb|EGI39072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA280]
 gi|331073017|gb|EGI44342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H591]
 gi|331077839|gb|EGI49051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H299]
 gi|332089334|gb|EGI94438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii 3594-74]
 gi|332345731|gb|AEE59065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UMNK88]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|170680590|ref|YP_001746071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SMS-3-5]
 gi|205831507|sp|B1LL68|MNMG_ECOSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170518308|gb|ACB16486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SMS-3-5]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|326568737|gb|EGE18807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC8]
          Length = 632

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 18/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDESSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQD---------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            T  N      +  QD          K  +  + L  P+ +  ++  +       S+ V 
Sbjct: 490 ATPNN------AIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKVSDST--VSAKVG 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L 
Sbjct: 542 EQIEISVKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLG 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA++LL + IKK
Sbjct: 602 QASRISGVTPAAVSLLAMTIKK 623


>gi|302880136|ref|YP_003848700.1| glucose inhibited division protein A [Gallionella capsiferriformans
           ES-2]
 gi|302582925|gb|ADL56936.1| glucose inhibited division protein A [Gallionella capsiferriformans
           ES-2]
          Length = 627

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 405/616 (65%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA V+A+ G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALVSARAGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KG AVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDIGGIQFRILNSSKGYAVRATRAQADRMLYKQAIRTMLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ ++ +V Q        TVVLT GTFL G+IH+G+    AGR GD PS SL + 
Sbjct: 127 DLLVEQDKVTGVVTQLGLRFSAKTVVLTAGTFLGGLIHVGQANYQAGRAGDPPSVSLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             + +   GRLKTGTP R+DG++I +   ++Q  D+ +  FSFM ++  + RQ+ C IT 
Sbjct: 187 LRELNLPVGRLKTGTPPRIDGRSIDYSVLQEQPGDDPVPVFSFMGNRAMHPRQMPCWITE 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH II   +  S +++G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T  
Sbjct: 247 TSERTHDIIRGGLDRSPLFTGAIEGVGPRYCPSIEDKITRFSGKTSHQIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP  L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLALVRSIKGMENAHILRPGYAIEYDYFNPCGLKSSLETKAIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +  ++D  C  R ++Y+GVM+DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNASLQVREMDAWCPRRDEAYLGVMVDDLITQGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F    +     +  L+S  ++
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEIGRKLGIVDDARWQAFEIKREAIALEQQRLRSTWMS 486

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS--SLVIERLQIE 539
            +NL    +  +  K      + +E L  PD +  +L ++ P A + +    V E+++I+
Sbjct: 487 PRNLPVEEAQRVLGKNIDHEYSLHELLLRPDVNYASLMTL-PGAGEATPDPWVSEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E K  +  E + +P D DY  +  LS E+++KL+  KP  + QA++I 
Sbjct: 546 AKYQGYIDRQHAEIKSSERNEVQRLPSDLDYREVRGLSIEVQQKLNTHKPETVGQAARIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++LLL+++K+
Sbjct: 606 GITPAAISLLLVHLKR 621


>gi|225873934|ref|YP_002755393.1| glucose inhibited division protein A [Acidobacterium capsulatum
           ATCC 51196]
 gi|254811501|sp|C1FAF1|MNMG_ACIC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|225794576|gb|ACO34666.1| glucose inhibited division protein A [Acidobacterium capsulatum
           ATCC 51196]
          Length = 659

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 303/643 (47%), Positives = 413/643 (64%), Gaps = 39/643 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  AA++G  TAL T     I  MSCNPA+GG+ KGHLVRE+DAL
Sbjct: 7   YDVVVVGAGHAGCEAAMAAARMGLRTALFTLNLDLIAQMSCNPAVGGIAKGHLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG +ADA GIQFR+LN  +GPAV  PR Q D++ YR+ M+  + SQ NL + Q E  
Sbjct: 67  GGIMGELADAVGIQFRLLNTSRGPAVWSPRAQCDKQQYRVKMREVLESQPNLYIKQAEAV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ I ++D   IR    V+TTGTFL G+IH G+ +IPAGR G+ PS  L  S
Sbjct: 127 DVVVEDARVTGIRLRDGRTIRAGATVITTGTFLNGLIHCGEERIPAGRSGEPPSVLLGES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      RLKTGTP RLDG+TI W + E+Q  D    PFSF T  +  RQI C I  T
Sbjct: 187 LKQLGLRGCRLKTGTPPRLDGRTIDWARFEEQPGDADPTPFSFRTKTLPMRQISCHIAYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET R+I EN+  S +YSG I++ GPRYCPSIEDK+V+F +++ HQ FLEPEGLNT  V
Sbjct: 247 TPETLRLIRENVHRSPMYSGQIEAIGPRYCPSIEDKVVKFPDKDRHQFFLEPEGLNTHEV 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LP E+Q++ +R+IPGLE   ++RPGYAIEYD I+P EL  +L  KK  GL+L
Sbjct: 307 YVNGMSTSLPMEVQYEIVRSIPGLENAEMLRPGYAIEYDAIDPTELDRSLRVKKFEGLYL 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A           +RT++Y G++IDDL SKG  EPYR
Sbjct: 367 AGQINGTSGYEEAACQGIMAGINAALSVRDDAPFTLNRTEAYTGILIDDLISKGTNEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL-LKSLVLT 484
           MFTSRAE+R+ LR DNAD RLTP G +LG I +   + +A Y  E    R++ L+ L+ T
Sbjct: 427 MFTSRAEFRLHLRIDNADRRLTPYGRRLGLIHD---EAWADY--EAKQARAVTLEKLLAT 481

Query: 485 S--KNLSSTSISFKQDGKT-------RTAYEFLSYPDFSIQNLFSIC------------- 522
              K+++  + +  Q G T       +T  + L  P+ SI+ L+++              
Sbjct: 482 RKIKDVTPLAPALAQAGITDAASLAGQTYAQLLKRPEMSIEALWTVIRAEVAEGEAASLF 541

Query: 523 ----PDARKFSSLV-------IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
                +A + S  +       ++ ++ E  YA Y  +Q    +++K  E R+IP+ FDY+
Sbjct: 542 APWFTNAEEASQPLPAFVRNELKSVETEIKYAGYLDQQRKSMEKLKKAETRVIPEWFDYA 601

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           S+  LS E++EKL  ++P  + QAS+I G+TPAAL+L+ +YI+
Sbjct: 602 SVSGLSREMQEKLVRVRPQTIGQASRIPGVTPAALSLINVYIE 644


>gi|324111640|gb|EGC05621.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia fergusonii B253]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C +T 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSI-SFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
                   + ++     +R A   + L  P+ + + L S+ P A   +     E+++I+ 
Sbjct: 487 PSTEGVAEVNAYLTSPLSREASGEDLLRRPEMTYETLTSLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|254511824|ref|ZP_05123891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium KLH11]
 gi|221535535|gb|EEE38523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium KLH11]
          Length = 532

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/526 (52%), Positives = 365/526 (69%)

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           ++GPR QADR LYR AM +E   +ENL VI GEV  F  + N ++ + + D S I   TV
Sbjct: 1   MQGPRAQADRALYRAAMVKETRQRENLSVIAGEVVDFVMDGNRVTGVKLADGSEIPARTV 60

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT+GTFLRGVIHIG +  P GRMGD PS  L      F     RLKTGTP RLDG+TI 
Sbjct: 61  ILTSGTFLRGVIHIGDVSRPGGRMGDRPSVKLAERLDGFALPMARLKTGTPPRLDGRTIN 120

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           WD  E+Q  D     FSF+++ +T  QI CGIT TN ETH II  N+  SA+Y G I   
Sbjct: 121 WDILERQDGDAEPTLFSFLSNTVTAPQIACGITHTNAETHEIIERNLSRSAMYGGRIDGI 180

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDKIVRF ++  HQIFLEPEG++   VYPNGIST+LPEE+Q  ++R+I GLE
Sbjct: 181 GPRYCPSIEDKIVRFADKESHQIFLEPEGVHDHTVYPNGISTSLPEEVQIDYVRSIRGLE 240

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           + NII+PGYAIEYDY++P+ L  +L    ISGL+LAGQINGTTGYEEAAAQGLVAG+N+A
Sbjct: 241 QANIIQPGYAIEYDYVDPRVLKASLSLPDISGLYLAGQINGTTGYEEAAAQGLVAGLNAA 300

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
            +S +   I F+R+DSYIGVM+DDLT++GV EPYRMFTSRAE+R+SLR DNAD RLTPIG
Sbjct: 301 LESQERGPIHFTRSDSYIGVMVDDLTTRGVAEPYRMFTSRAEFRLSLRADNADQRLTPIG 360

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
            + GCI E RQ  FAK +++    +  L +   T K +++  I+  QDG  R     L++
Sbjct: 361 EEHGCISEERQVIFAKKLEKLEVAKVKLAARTYTPKEINAAGITVNQDGNKRDGMAVLAF 420

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           PD + +++ ++ P+     + +  +++ ++ YA Y  RQ  + + +K +E   IP+DFDY
Sbjct: 421 PDVTFEDVVALEPNLADTEAEIRRQIERDALYANYIARQQRDVEAMKRDEAHEIPRDFDY 480

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            +L  LS E+K+KLS  KP N+ QA ++EG+TPAAL L+L  ++++
Sbjct: 481 FALDGLSAEMKQKLSEAKPENIAQAGRVEGVTPAALTLVLAKLRRD 526


>gi|323959807|gb|EGB55457.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H489]
          Length = 629

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLERSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|218551275|ref|YP_002385067.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Escherichia fergusonii ATCC 35469]
 gi|218358817|emb|CAQ91474.1| glucose-inhibited cell-division protein [Escherichia fergusonii
           ATCC 35469]
 gi|325499547|gb|EGC97406.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia fergusonii ECD227]
          Length = 629

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C +T 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
                   ++        +  +  + L  P+ + + L S+ P A   +     E+++I+ 
Sbjct: 487 PSTEGVAEVNAHLTSPLSREASGEDLLRRPEMTYETLTSLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|254360965|ref|ZP_04977111.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           PHL213]
 gi|153092444|gb|EDN73507.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           PHL213]
          Length = 630

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 303/618 (49%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ YDVIV+GGGHAG EAA   A++G  T ++TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q 
Sbjct: 64  DAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRVLYRNAVRTALENQPNLDIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E N     V +     +   VVLT GTFL G IHIG      GR GD  +  L
Sbjct: 124 EVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATML 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +     +    RLKTGTP RLD +TI +D   KQ  DE L  FSFM D   + RQI C 
Sbjct: 184 ADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVFSFMGDVSQHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGLN
Sbjct: 244 ITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I 
Sbjct: 304 TIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AGIN+A +    +    +R  +Y GV++DDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAGAQGLLAGINAALQVQGKEAWYPTRDQAYTGVLVDDLCTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RLTP   +LG I E R  RF + ++     R+ LKS 
Sbjct: 424 EPYRVFTSRAEYRLLLREDNADIRLTPKAHELGLIDEARWVRFNQKMEAIEQERARLKST 483

Query: 482 V--LTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
              L   NL   +        +  +  + +  P+ S + L  I   A       V E+++
Sbjct: 484 WAHLQMPNLDELNALLANPLAREASGEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+
Sbjct: 544 IAIKYQGYIEHQYNEIERHKRHENTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+++LL+ +KK
Sbjct: 604 ISGITPAAISILLVNLKK 621


>gi|152978019|ref|YP_001343648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus succinogenes 130Z]
 gi|171472940|sp|A6VL66|MNMG_ACTSZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150839742|gb|ABR73713.1| glucose inhibited division protein A [Actinobacillus succinogenes
           130Z]
          Length = 629

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 303/622 (48%), Positives = 397/622 (63%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A+++ + +Q NLD+ Q E 
Sbjct: 66  MGGLMATAADRAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRQALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+   + +  +     R   V+LT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILLERERAAGVSTKMGLTFRAKAVILTAGTFLAGKIHIGLTNYEGGRAGDPASVTLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQIECGI 242
                     RLKTGTP RLD +TI +D   KQ+ D  L  FSFM  TD+   RQI C I
Sbjct: 186 RLRDLGLRVDRLKTGTPPRLDARTINFDILAKQYGDAELPVFSFMGSTDQ-HPRQIPCFI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +R  HQI+LEPEGL +
Sbjct: 245 THTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKIMRFADRTSHQIYLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VYPNGIST+LP ++Q + + ++ GLE   I++PGYAIEYDY +P++L PTLETK I G
Sbjct: 305 NEVYPNGISTSLPFDVQMKIVNSMKGLENTRIVKPGYAIEYDYFDPRDLKPTLETKAIGG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGINAGLFVREKDAWFPRRDQAYVGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + +      R  LK + 
Sbjct: 425 PYRVFTSRAEYRLLLREDNADSRLTPIAHELGLIDEARWARFNRKMDNITKERERLKQIW 484

Query: 483 LTSKNLSSTSISFKQDGK-TRTAY--EFLSYPDFSIQNL-----FSICPDARKFSSLVIE 534
           +  ++     I+   +   TR A   + L  P+ S + L     FS   + ++ +    E
Sbjct: 485 IHPQSEHLNHINGLLNAPLTREASGEDLLRRPEVSYEKLTKTAAFSPALEDKQAA----E 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y   Q  E ++ K  E  LIP+ FDYS +  LSNE++ KL   +P ++ Q
Sbjct: 541 QVEIAIKYQGYIEHQQEEIEKQKRHENTLIPERFDYSLVAGLSNEVRAKLEQHRPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           A +I G+TPAA+++LL+ +KK 
Sbjct: 601 AGRISGVTPAAISILLVNLKKQ 622


>gi|260857844|ref|YP_003231735.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O26:H11 str. 11368]
 gi|257756493|dbj|BAI27995.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O26:H11 str. 11368]
 gi|323155422|gb|EFZ41605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli EPECa14]
          Length = 629

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNVSQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|51598439|ref|YP_072627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBi]
 gi|81170527|sp|Q662I6|MNMG_BORGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51573010|gb|AAU07035.1| glucose inhibited division protein A [Borrelia garinii PBi]
          Length = 621

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 401/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLDFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R + VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIKGVVTERGNKFRSNVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF    +   Q+ C +T
Sbjct: 183 KTLLSLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FVAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K+++   +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVADEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRN 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|170718147|ref|YP_001785176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus somnus 2336]
 gi|189039343|sp|B0UWH3|MNMG_HAES2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168826276|gb|ACA31647.1| glucose inhibited division protein A [Haemophilus somnus 2336]
          Length = 629

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/616 (48%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++   T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALATARMKLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR  ++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK+ I+ +  +     R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDIILEKDSIAGVETKMGLKFRAKSVVLTAGTFLAGKIHIGLENYAGGRAGDPASVNLAK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ+ DE+L  FSFM + +    QI C IT
Sbjct: 186 KLRDLNLRVNRLKTGTPPRIDARTINFDILAKQYGDEKLPVFSFMGSVEQHPEQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNDQTHDVIRKNLDRSPMYTGVIEGIGPRYCPSIEDKVIRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMKIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKESWFPRRDQAYIGVLVDDLCTVGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLT I  +LG I + R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTSIARELGLIDDIRWARFNQKMENIELERQRLRSIWL 485

Query: 484 T--SKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
              S+ L+  +   K    +     + L  P+ + Q L ++ P          +E+++I 
Sbjct: 486 HPRSEYLNEANEILKSPLVREVNGEDLLRRPEINYQILTALTPFKPAMEDKEAVEQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E   IP +FDY ++  LSNE+  KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIERQKRHENTAIPANFDYKNISGLSNEVCAKLEQYRPISIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA+++LL+ +KK
Sbjct: 606 GITPAAISILLVNLKK 621


>gi|82779067|ref|YP_405416.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae Sd197]
 gi|309784452|ref|ZP_07679091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1617]
 gi|123561167|sp|Q329T0|MNMG_SHIDS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81243215|gb|ABB63925.1| glucose-inhibited division [Shigella dysenteriae Sd197]
 gi|308927959|gb|EFP73427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1617]
          Length = 629

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K + GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFLQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTRVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|148653578|ref|YP_001280671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter sp. PRwf-1]
 gi|205375708|sp|A5WGD0|MNMG_PSYWF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148572662|gb|ABQ94721.1| glucose inhibited division protein A [Psychrobacter sp. PRwf-1]
          Length = 642

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/614 (48%), Positives = 393/614 (64%), Gaps = 11/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 16  KAYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 76  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDLFQQG 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E     ++V     + R  TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 136 ADDILVENGKACAVVTATGIIFRTKTVVLTSGTFLGGVIHIGLDNSKGGRAGDQPSIKLA 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTPAR+D +T+ +   + Q  D  L   SFM +  +   Q+ C I
Sbjct: 196 ERLRELKLPVGRLKTGTPARIDARTVDFSVMQTQPGDTPLPVMSFMGNVDMHPEQVNCFI 255

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +++  S ++SG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL T
Sbjct: 256 THTNEKTHDIIRKHLDRSPLFSGTIEGVGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTT 315

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FIRT+ GLE  +I RPGYAIEYDY NP+ L PTLETK I  
Sbjct: 316 HELYPNGISTSLPFDVQLEFIRTMAGLENAHITRPGYAIEYDYFNPQNLKPTLETKSIDS 375

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNK---LDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG+N+A  +     +D     R  +Y+GV++DDL + G
Sbjct: 376 LYFAGQINGTTGYEEAGVQGLLAGVNAALSTQDNPVMDSWTPRRDQAYLGVLVDDLITHG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT IG KLG + + R + + + ++      + LK
Sbjct: 436 TKEPYRMFTSRAEYRLLLREDNADQRLTEIGRKLGLVDDTRWQAYQQKMESMATESARLK 495

Query: 480 SLVLTSKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            L  T  N      + +Q G    K  TAY+ L  P+    ++ ++     + ++ V E+
Sbjct: 496 DLWATPHNELGKKFT-EQTGEVLSKEATAYDLLKRPNVGFNDIAAVT--GAQVAADVGEQ 552

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +  ++K  E   +P DFDY ++  LSNE+ +KL+ ++P  L QA
Sbjct: 553 IEISVKYAGYIDRQQEDIDQMKRLENTQLPADFDYKAVSGLSNEIVQKLNDIRPATLAQA 612

Query: 596 SKIEGMTPAALNLL 609
           S+I G+TPAA+ LL
Sbjct: 613 SRISGVTPAAIQLL 626


>gi|326564668|gb|EGE14886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 46P47B1]
          Length = 632

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 18/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIHLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQD---------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            T  N      +  QD          K  +  + L  P+ +  ++  +       S+ V 
Sbjct: 490 ATPNN------AIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKVSDST--VSAKVG 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L 
Sbjct: 542 EQIEISVKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLG 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA++LL + IKK
Sbjct: 602 QASRISGVTPAAVSLLAMTIKK 623


>gi|94501613|ref|ZP_01308130.1| glucose-inhibited division protein A [Oceanobacter sp. RED65]
 gi|94426296|gb|EAT11287.1| glucose-inhibited division protein A [Oceanobacter sp. RED65]
          Length = 628

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 401/617 (64%), Gaps = 5/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EA   AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EID
Sbjct: 5   KRYDVIVVGGGHAGTEACLAAARMGCKTLLLTHSIETVGVMSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG M R  D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +Q NL+  Q  
Sbjct: 65  AFDGAMARATDRGGIQFRTLNSRKGPAVRATRAQADRALYKAAIREIVENQPNLEFFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q    I   +VVLTTGTFL GVIHIG      GR GD PSN+L 
Sbjct: 125 CDDLIVEGDTVKGVVTQAGIKIYADSVVLTTGTFLGGVIHIGMDNYQGGRAGDPPSNNLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +  F+ GRLKTGTPAR+D +++ +   ++Q  D+     SFM ++  + +QI+C I
Sbjct: 185 KRLRELPFNVGRLKTGTPARIDARSVDFSVMQRQPGDDVTPIMSFMGNREEHPQQIDCFI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL+T
Sbjct: 245 THTNEQTHDIIRAGLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFVEPEGLST 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + I ++ G E  +I RPGYAIEYD+ NP++L  +LETK + G
Sbjct: 305 HELYPNGISTSLPFDVQVEMIHSMKGFENAHITRPGYAIEYDFFNPQDLKHSLETKFMQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N+A +S + D     R ++YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLLAGTNAALRSMEKDAWYPRRDEAYIGVLVDDLITMGTNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS-L 481
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F +  +        LKS  
Sbjct: 425 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVGDERWAAFCEKKEAIEQEEQRLKSTW 484

Query: 482 VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +L +         F +   TR  +  + L  P+ +  ++ ++  +       V E++QI 
Sbjct: 485 ILPNTEEGDVVNGFSKTPITREYSLMDLLKRPEITYSDIANLKGEPVA-DPQVSEQVQIM 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ+ E ++++  E  L+P D D+S +  LSNE+ +KLS ++P  L  AS+I+
Sbjct: 544 AKYEGYINRQLEEIEQMRRYEDTLLPADLDFSKVGGLSNEIVQKLSEIQPETLGTASRIQ 603

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++ LLIY+KK+
Sbjct: 604 GVTPAAISQLLIYLKKH 620


>gi|30250397|ref|NP_842467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosomonas europaea ATCC 19718]
 gi|81170562|sp|Q82S78|MNMG_NITEU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|30181192|emb|CAD86388.1| gidA; glucose inhibited division protein A [Nitrosomonas europaea
           ATCC 19718]
          Length = 639

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 400/620 (64%), Gaps = 3/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +D+IV+GGGHAG EAA  AA++G  T L+T    T+G MSCNP+IGG+GKGHLV+EI
Sbjct: 4   SKDFDIIVVGGGHAGTEAALAAARMGQKTLLLTQNLDTLGQMSCNPSIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++R + +Q +L ++Q 
Sbjct: 64  DALGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRRRLEAQPDLLLLQS 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V       + I+ +V           VVLT GTFL GV H+G     AGR GD  S  L
Sbjct: 124 TVDDLLLNGDKITGVVTHLGMTFSARAVVLTVGTFLGGVAHVGHQNFQAGRAGDPASIRL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +   + +   GRLKTGTP R+D +TI +    +Q  DE +  FSF+ +   + RQI C 
Sbjct: 184 AHRLREMNLSVGRLKTGTPPRIDARTIDFRILREQPGDEPVPVFSFLGNITQHPRQISCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRTN  TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF ER+ H IFLEPEGL 
Sbjct: 244 MTRTNERTHEIIRTGLDRSPLYTGKIEGIGPRYCPSIEDKVVRFSERDAHTIFLEPEGLE 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LETK I 
Sbjct: 304 TSEIYPNGISTSLPFDVQVELVRSIAGLENAHITRPGYAIEYDYFDPRTLKKSLETKVID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N++ K  + +  C SR ++YIGV++DDL ++GV 
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGLNASLKIKEQEPWCPSRDEAYIGVLVDDLVTRGVT 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + E R + FA   +     ++ L++ 
Sbjct: 424 EPYRMFTSRAEFRLQLREDNADMRLTETGYRLGLVSEERWQAFAAKREAIETEKTRLRNT 483

Query: 482 VLTSKNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIE 539
            ++   LS      +  D ++ + Y+ L  P+     L S+    +    S V ++++I+
Sbjct: 484 WISPGTLSKLQTPDQPADDRSYSLYDLLRRPEIGYAELVSLSARGQSVIDSQVAQQVEID 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E       E  ++PKD DY ++  LSNE+ +KL+  +P  + QA++I 
Sbjct: 544 VKYEGYIERQRQEVVRHAQHEAMILPKDMDYRAVRGLSNEVTQKLNQHQPETIGQAARIS 603

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+TPAA++LLL+++K+   +
Sbjct: 604 GITPAAISLLLVHLKRGMAR 623


>gi|194435665|ref|ZP_03067768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 101-1]
 gi|253775624|ref|YP_003038455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163692|ref|YP_003046800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B str. REL606]
 gi|300932376|ref|ZP_07147641.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|194425208|gb|EDX41192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 101-1]
 gi|242379279|emb|CAQ34086.1| protein involved in a tRNA modification pathway, subunit of complex
           involved in modification of tRNA [Escherichia coli
           BL21(DE3)]
 gi|253326668|gb|ACT31270.1| glucose inhibited division protein A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975593|gb|ACT41264.1| glucose-inhibited division protein A [Escherichia coli B str.
           REL606]
 gi|253979750|gb|ACT45420.1| glucose-inhibited division protein A [Escherichia coli BL21(DE3)]
 gi|300459881|gb|EFK23374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|323971220|gb|EGB66466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA007]
          Length = 629

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|320180077|gb|EFW55019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii ATCC 9905]
          Length = 629

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTRVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|43257|emb|CAA25773.1| unnamed protein product [Escherichia coli]
 gi|290590|gb|AAA62093.1| glucose inhibited division protein [Escherichia coli]
          Length = 628

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/615 (48%), Positives = 399/615 (64%), Gaps = 4/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDGK-TRTAY-EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESS 541
               ++  ++       +R A  E L  P+ + + L ++ P A   +     E+++I+  
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G+
Sbjct: 547 YEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKN 616
           TPAA+++LL+++KK 
Sbjct: 607 TPAAISILLVWLKKQ 621


>gi|226320915|ref|ZP_03796466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 29805]
 gi|226233687|gb|EEH32417.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 29805]
          Length = 621

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/620 (47%), Positives = 399/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + K E QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKMEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|301155227|emb|CBW14692.1| glucose-inhibited cell-division protein [Haemophilus parainfluenzae
           T3T1]
          Length = 629

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/617 (47%), Positives = 393/617 (63%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +  +     R  +V+LT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVCGVETKMGLKFRAKSVILTAGTFLAGKIHIGLEHYEGGRAGDPASVTLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
             ++     +  +      +     + L  P+ +   L S+ P          +E+++I 
Sbjct: 486 HPRSEYLEEANKVLGSPLVREANGEDLLRRPEITYDILTSLTPYKPAMEDREAVEQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++++L+ +KK 
Sbjct: 606 GITPAAISIILVNLKKQ 622


>gi|256021237|ref|ZP_05435102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sp. D9]
 gi|332282464|ref|ZP_08394877.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Shigella sp. D9]
 gi|332104816|gb|EGJ08162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Shigella sp. D9]
          Length = 629

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I G+F
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGMF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|296113565|ref|YP_003627503.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis RH4]
 gi|295921259|gb|ADG61610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis RH4]
 gi|326565484|gb|EGE15655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 12P80B1]
 gi|326567753|gb|EGE17859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC1]
 gi|326568611|gb|EGE18682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC7]
 gi|326572605|gb|EGE22594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis CO72]
          Length = 632

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 18/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQD---------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            T  N      +  QD          K  +  + L  P+ +  ++  +       S+ V 
Sbjct: 490 ATPNN------AIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKVSDST--VSAKVG 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L 
Sbjct: 542 EQIEISVKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLG 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA++LL + IKK
Sbjct: 602 QASRISGVTPAAVSLLAMTIKK 623


>gi|188535592|ref|YP_001909389.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia tasmaniensis Et1/99]
 gi|188030634|emb|CAO98530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Erwinia
           tasmaniensis Et1/99]
          Length = 629

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/616 (48%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEQERQRLREIWVH 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
            K+     ++        K  +  + L  P+ + Q L ++   A   + +   E+++I+ 
Sbjct: 487 PKSECVAEVNAVISAALTKEASGEDLLRRPEMTYQQLMTLTHFAPALADTQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTLLPTDLDYQQVSGLSNESIAKLNDSKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|326559567|gb|EGE09981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 7169]
          Length = 632

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/616 (48%), Positives = 391/616 (63%), Gaps = 6/616 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMVNTGEILTKENSLLDLLKRPNITFDDIAKVSDST--VSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++LL + IKK
Sbjct: 608 GVTPAAVSLLAMTIKK 623


>gi|326562695|gb|EGE12997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 103P14B1]
 gi|326574202|gb|EGE24150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 101P30B1]
 gi|326574987|gb|EGE24916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis O35E]
          Length = 632

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 18/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQD---------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            T  N      +  QD          K  +  + L  P+ +  ++  +       S+ V 
Sbjct: 490 ATPNN------AIGQDFMANTGEILTKENSLLDLLKRPNIAFDDIAKVSDST--VSAKVG 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L 
Sbjct: 542 EQIEISVKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLG 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA++LL + IKK
Sbjct: 602 QASRISGVTPAAVSLLAMTIKK 623


>gi|198284890|ref|YP_002221211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668068|ref|YP_002427570.1| glucose-inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254811502|sp|B7JB95|MNMG_ACIF2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811503|sp|B5ER53|MNMG_ACIF5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|198249411|gb|ACH85004.1| glucose inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520281|gb|ACK80867.1| glucose-inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 624

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/626 (48%), Positives = 411/626 (65%), Gaps = 13/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIV+GGGHAG EAAA AA+LG  T L+T    TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MQNSFDVIVVGGGHAGTEAAAAAARLGVRTLLLTQNLDTIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M    D AGIQFR LN  KGPAVR  R QADR LY+ A++R +     L + Q
Sbjct: 61  VDALGGIMALAIDQAGIQFRTLNASKGPAVRATRAQADRSLYKRAVRRLLEDIPALQLFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  ++++   ++R + VVLTTGTFL G +H+G    PAGR GD PSN+
Sbjct: 121 GMVGDLLMEGDRLGGVILETGLVLRAAQVVLTTGTFLGGRVHMGDQNYPAGRAGDPPSNA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L     +  F   RLKTGTP R+DG++I +   E Q  D     FSFMT +I   Q+ C 
Sbjct: 181 LAQRLREMAFPVARLKTGTPPRIDGRSIDYGVLEAQPGDAPPPAFSFMTRRIGVPQLACH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N+  SA+Y G I+S GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+
Sbjct: 241 ITHTNARTHEIIQTNLHQSAMYGGHIQSVGPRYCPSIEDKVVRFADKASHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP  +Q + +R++ GLE   ++RPGYAIEYDY++P+EL P+LE++++ 
Sbjct: 301 THEVYPNGISTSLPFGVQIELVRSMRGLENAVLLRPGYAIEYDYLDPRELHPSLESRRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+AR++ +L      R ++Y+GVM+DDL ++G+ 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLLAGLNAARRARELAAWTPGRHEAYLGVMVDDLVTRGLD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP G  LG + ++R   F+         R+ L+ L
Sbjct: 421 EPYRMFTSRAEYRLQLREDNADLRLTPHGRALGLVDDQRWTAFSAKQDAVQAERNRLEGL 480

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVI 533
            +   +  +  I+ K D    +  TA E L  PD+   +L  +     C DA+       
Sbjct: 481 RIHPGSAIAGRIAAKTDQPLSRDVTALELLRRPDWDYASLLQVLDLVPCSDAQ-----AC 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+L+IE  YA Y  RQ  E       E   IP D DY+++  LS E+ ++L+  +P  + 
Sbjct: 536 EQLEIECKYAGYVARQHDEITRAARWEGTDIPADMDYAAVRGLSTEVMQRLARQRPQTIG 595

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
            AS+I G+TPAA++LLLI++K+  ++
Sbjct: 596 LASRIPGVTPAAVSLLLIHVKRRGLR 621


>gi|312149390|gb|ADQ29461.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi N40]
          Length = 621

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/620 (47%), Positives = 399/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + K E QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHKKSVDFSKMEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIRIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIRS 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +LLIY    KN V +N
Sbjct: 599 TDITVLLIYFSNPKNKVVIN 618


>gi|118594208|ref|ZP_01551555.1| glucose-inhibited division protein A [Methylophilales bacterium
           HTCC2181]
 gi|118439986|gb|EAV46613.1| glucose-inhibited division protein A [Methylophilales bacterium
           HTCC2181]
          Length = 631

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/618 (48%), Positives = 400/618 (64%), Gaps = 12/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVVGGGHAGSEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R  D AGIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q++L + Q  V 
Sbjct: 67  GGVMARATDIAGIQFRILNRSKGPAVRATRAQADRVLYKAAIRQFLENQKDLWLFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + + N IS +V Q         VVLT GTFL G+IH+G      GR GD  S +L   
Sbjct: 127 DVSIKNNKISGVVTQSGIQFFSDNVVLTAGTFLGGLIHVGMESYKGGRAGDPSSETLAAK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
               +   GRLKTGTP R+DG++I +   E+Q  D     FSF+   I +  QI C IT 
Sbjct: 187 LKDLNLPVGRLKTGTPPRIDGRSIDYSLMEEQPGDLPTPRFSFIDPLIKHPEQIACWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TNL+TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQ+F+EPEGLNT  
Sbjct: 247 TNLKTHDIIRSGLDRSPMYTGVIEGIGPRYCPSVEDKIHRFADKESHQVFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P+ L  +LETK I+GLF
Sbjct: 307 VYPNGISTSLPFDVQLQLVRSIKGMESAHILRPGYAIEYDYYDPRALKASLETKAIAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGLVAG N+A +S   +    SR +SY+GVMIDDL +KGV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLVAGTNAALRSKGEEGWSPSRENSYMGVMIDDLITKGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT     LG I E +   F K  +        LK++V+ 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTERARTLGLICEHQWTNFNKKQESIKEEEKRLKNMVIR 486

Query: 485 SKNLSSTSISFKQD---GKT----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
               SS SI  KQ+   GK       A++ L  P+ S   L  +  D      LV E+++
Sbjct: 487 P---SSGSI-LKQEELFGKALDSEYKAFDLLKRPEVSYDKLMRLIDDEGAMGELVREQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y+ Y  RQ  E +  K + +  IP + DY ++  +  E K+ LS+ KP  + QAS+
Sbjct: 543 ILAKYSGYIVRQKAEIERNKGQMQTSIPSNMDYGAVHGIGIEAKQLLSLHKPETVHQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TP+ +++LLI++KK
Sbjct: 603 ISGITPSTISILLIHLKK 620


>gi|300940927|ref|ZP_07155453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
 gi|300454357|gb|EFK17850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
          Length = 629

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P +   +     E+++I+ 
Sbjct: 487 PSAEAAADVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFSPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|74314233|ref|YP_312652.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sonnei Ss046]
 gi|123615766|sp|Q3YVP5|MNMG_SHISS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|73857710|gb|AAZ90417.1| GldA [Shigella sonnei Ss046]
 gi|323167015|gb|EFZ52754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sonnei 53G]
          Length = 629

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+ G+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLVGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|241668754|ref|ZP_04756332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877285|ref|ZP_05249995.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843306|gb|EET21720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 627

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 306/620 (49%), Positives = 408/620 (65%), Gaps = 8/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NNTYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   +  Q+NLD+ Q 
Sbjct: 64  DAMGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLLNDQQNLDIFQD 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +   + +     +   VVLT GTFL G IHIG++    GR GD PSN+L
Sbjct: 124 SVDDLVVENDTVCGAITKTGITFKSKKVVLTVGTFLGGKIHIGQVSKEGGRAGDQPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN-RQIEC 240
                   F   RLKTGTP R+D +++ +   + Q  D     FSF +  KI + RQI C
Sbjct: 184 AARLRALPFRVDRLKTGTPPRIDSRSVDFSVMDVQHGDTPTPFFSFFSKGKIEHPRQIPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II  N+  SA+YSG I+  GPRYCPSIEDK+VRF E++ HQIF+EPEGL
Sbjct: 244 YITYTNSKTHEIITNNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFAEKDRHQIFVEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  +YPNG+ST+LP E+Q ++IR+I G E   IIRPGYAIEYD+ +P++L PTLETK I
Sbjct: 304 NSIELYPNGLSTSLPFEVQCEYIRSIKGFENAFIIRPGYAIEYDFFDPRDLKPTLETKHI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA AQGLVAGIN+A   +       +R++SY+GV+IDDL +KG 
Sbjct: 364 KNLFFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRSNSYMGVLIDDLITKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL+    ++G + ++ Q+ F       +   +++K+
Sbjct: 424 KEPYRMFTSRAEYRLILREDNADLRLSDKACEIGLLNKQDQEFFINKKTAIDENIAMMKN 483

Query: 481 LVLTSKNLSSTSISFKQDGK-TR--TAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIER 535
             +  +   +  +    D K TR  T ++ L  P+   + L  I PD   +     VIE+
Sbjct: 484 TWIGPQTQKARELEKFLDKKMTRESTLFDLLKRPELDYKKLQQI-PDTNLKLEDESVIEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + Y+ Y  RQ  +  +I   E + IP+ FDYS +  LSNE+ +KLS  KP  L +A
Sbjct: 543 IEISAKYSGYIERQSKDIAKILTLESKTIPESFDYSQVKGLSNEVLQKLSEQKPTTLGEA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL IY+KK
Sbjct: 603 SRIPGVTPAAVSLLTIYMKK 622


>gi|216264023|ref|ZP_03436017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii ACA-1]
 gi|215980067|gb|EEC20889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii ACA-1]
          Length = 621

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 401/620 (64%), Gaps = 8/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALAISRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V 
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTVV 122

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            F  N+ +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L 
Sbjct: 123 DFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLD 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +T
Sbjct: 183 KTLLGLGFEMGRLKTGTPARIHRKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+
Sbjct: 243 YTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTE 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+S++LPE +Q + I +I GLE   I RPGYA+EYDYINP EL+P+LE+K++ GL
Sbjct: 303 EMYLNGLSSSLPENVQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPSLESKRVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EP
Sbjct: 363 FIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L
Sbjct: 423 YRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRL 482

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + K+++   +   +    +  Y  L  P  ++ NL  I P     S +++E+++++  Y 
Sbjct: 483 SLKDIADEQL---KKHVNKDFYHILKDPSINLDNLIKIDPSLSD-SKVILEQVELDIKYE 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+  
Sbjct: 539 GYINRQKDLIKKLHNLELVKLPFDFNYGIIEGLSREAREKFSKVQPATLAQASRIPGIRN 598

Query: 604 AALNLLLIYIK--KNTVKLN 621
             + +L IY    KN V LN
Sbjct: 599 TDITVLFIYFSNPKNKVVLN 618


>gi|24115044|ref|NP_709554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 301]
 gi|30064954|ref|NP_839125.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 2457T]
 gi|81170577|sp|Q83PJ6|MNMG_SHIFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831561|sp|Q0SYT5|MNMG_SHIF8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24054304|gb|AAN45261.1| glucose-inhibited division protein GidA [Shigella flexneri 2a str.
           301]
 gi|30043215|gb|AAP18936.1| glucose-inhibited division protein GidA [Shigella flexneri 2a str.
           2457T]
 gi|281603139|gb|ADA76123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Shigella flexneri 2002017]
 gi|313647643|gb|EFS12091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 2457T]
 gi|332750750|gb|EGJ81158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 4343-70]
 gi|332750896|gb|EGJ81302.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-671]
 gi|332751672|gb|EGJ82070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2747-71]
 gi|332764002|gb|EGJ94239.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2930-71]
 gi|332997296|gb|EGK16912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-218]
 gi|333013465|gb|EGK32836.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-304]
          Length = 629

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +  +  +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQISGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|42525229|ref|NP_970609.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bdellovibrio bacteriovorus HD100]
 gi|81170524|sp|Q6MGL6|MNMG_BDEBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39577440|emb|CAE81263.1| glucose inhibited division protein A [Bdellovibrio bacteriovorus
           HD100]
          Length = 642

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/622 (47%), Positives = 398/622 (63%), Gaps = 13/622 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAG EA   +A+LG +T ++T  T  IG MSCNP+IGGL KGH+VR
Sbjct: 1   MANKKYDVIVVGAGHAGIEACLSSARLGLNTLMVTTNTDRIGYMSCNPSIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G MG  AD   IQ++ LN  KGPAVRG R Q D+ LY    +  + +Q NL+V+
Sbjct: 61  EIDVLGGQMGVAADETCIQYKRLNASKGPAVRGTRVQNDKHLYSQFQKEALYNQPNLEVL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEV     EK++   +V+QD S I     ++TTGTF+ GV+HIG  +   GR+GD PS 
Sbjct: 121 QGEVKRLILEKDLCVGVVLQDGSEIFGKATIITTGTFMNGVMHIGLRQEAGGRVGDQPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            L +   +F F+  RLKTGTPARL   +I W KT  Q  DE++ PFSF + DK+   Q+ 
Sbjct: 181 GLSDQLAQFGFEVKRLKTGTPARLLKDSIDWSKTIPQAGDEKVYPFSFRSSDKLKLPQVL 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH II  N+  S +Y G I+  GPRYCPSIEDKI RF ER  HQ FLEPEG
Sbjct: 241 CYLTRTTEETHDIIRGNLDKSPMYCGIIEGVGPRYCPSIEDKITRFAERTSHQTFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+TD++Y  GIST+LPE++Q +F++TIPGLE V + R GYA+EYDYI P +++  LET+ 
Sbjct: 301 LSTDLIYLQGISTSLPEDVQDRFLKTIPGLENVKVARYGYAVEYDYIEPTQIWHRLETRT 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEAAAQGL+AGIN+A      +     R  +Y+GVMIDDL +KG
Sbjct: 361 IRQLFLAGQINGTSGYEEAAAQGLIAGINAAHSILGREEFILGRDQAYMGVMIDDLVTKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DN  +RL+ +G KLG +     +      +    L   LK
Sbjct: 421 TREPYRMFTSRAEHRLVLREDNTIDRLSDLGRKLGLVSAESFELLTNLRERRQVLHDRLK 480

Query: 480 SLVL-TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNL----FSICPDARKFSSLV 532
           + VL  +K++ +   +I      K+ T  E L  P+ +  +L    F + PD       V
Sbjct: 481 NTVLYPTKDIQAILATIPTPAMSKSLTFEELLRRPELTSSHLELLNFELDPDPN-----V 535

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E ++IE  Y+ Y  RQM    + K  E+ L+P D  Y+ +  LSNE K+KL  +KP  L
Sbjct: 536 VEPVEIEVKYSGYVKRQMDLIVQSKRLEEMLLPDDLAYAEIRGLSNEEKDKLLRVKPRTL 595

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ P+A+  ++I++K
Sbjct: 596 GQAQRISGVNPSAIQAIMIHLK 617


>gi|153948674|ref|YP_001403128.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis IP 31758]
 gi|166989740|sp|A7FPF0|MNMG_YERP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152960169|gb|ABS47630.1| glucose-inhibited division protein A [Yersinia pseudotuberculosis
           IP 31758]
          Length = 629

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/616 (48%), Positives = 399/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q +V 
Sbjct: 67  GGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQQVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L S+       +     ++++I+ 
Sbjct: 487 PHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|329894823|ref|ZP_08270623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC3088]
 gi|328922717|gb|EGG30051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC3088]
          Length = 630

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/617 (47%), Positives = 394/617 (63%), Gaps = 5/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EAA  +A++G +T LITH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   QTFDVIVIGGGHAGTEAALASARMGCATLLITHSVDTLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A+++ +  Q NL + Q  
Sbjct: 65  ALGGAMAEATDEAGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRKRLEQQSNLWIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +  ++ Q     +   VVLT GTFL G IHIG  +   GR GD  + +L 
Sbjct: 125 VDDLIIKGDRVEGVITQMGLRFKAPAVVLTAGTFLAGKIHIGLEQSQGGRAGDPAAMTLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
                 +    RLKTGTP R+D +T+ +   ++Q+ D      S M    T+ +Q+ C I
Sbjct: 185 ARLRDLNLRVDRLKTGTPPRIDARTVDFSVMQEQWGDTPEPVMSLMGSAATHPKQMCCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T
Sbjct: 245 THTNAQTHEIISQNLDRSPLFSGVIEGTGPRYCPSIEDKIHRFADKDSHQVFVEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q+  +R+I G E  +I+RPGYAIEYD+ +P+ L  TLETK I G
Sbjct: 305 NELYPNGISTSLPFDVQYAVVRSIKGFENAHIVRPGYAIEYDFFDPRGLKHTLETKAIDG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+  +         +R ++YIGVMIDDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLIAGLNAGLRVKGKPAWYPTRKEAYIGVMIDDLVTHGTAE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R + ++  +++       L S  
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTAIGRQLGLVNDLRWQDYSTKMEQLAAEHERLASTY 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           + +K   +     IS K   +  +  + L  P+    ++  +   A +    V ++++IE
Sbjct: 485 IQAKTPQAEKVEQISGKPLTREYSLLDLLKRPELHYHDIADLKGAACERLD-VAQQVEIE 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           S YA Y  RQ  E + +  + +  IP DFDY S+  LSNEL+ KL  + P  L QA +I 
Sbjct: 544 SKYAGYIARQEQEIQRMAGQAETQIPSDFDYQSVSGLSNELRSKLEDVNPLTLDQAGRIA 603

Query: 600 GMTPAALNLLLIYIKKN 616
           GMTPAAL+LL IY+KK+
Sbjct: 604 GMTPAALSLLAIYLKKH 620


>gi|222056912|ref|YP_002539274.1| glucose inhibited division protein A [Geobacter sp. FRC-32]
 gi|221566201|gb|ACM22173.1| glucose inhibited division protein A [Geobacter sp. FRC-32]
          Length = 624

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/618 (48%), Positives = 399/618 (64%), Gaps = 9/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+GGGHAGCEAA  AA++G  T L+T     I  MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKEYDVIVVGGGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  DA GIQFR+LN KKGPAVR  R QAD++ YRL M+R +  QENL + Q 
Sbjct: 65  DALGGEMAKNIDATGIQFRILNTKKGPAVRASRAQADKQQYRLRMKRVLEEQENLHLKQA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     +   +  +  +        TV+LTTGTF+RG+IHIG +    GR GD PS  L
Sbjct: 125 EVTALVMDGETVVGVDTKAGVRHMAKTVILTTGTFMRGLIHIGLVHYSGGRAGDLPSVGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            ++  +  FD GRLKTGTPARLD +TI + + E Q+ D++ IPFSF T++I N+Q+ C I
Sbjct: 185 SDNLRELGFDVGRLKTGTPARLDSRTIDFGRLEAQYGDDQPIPFSFSTERILNKQVPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  +H II   +  S +YSG I+  GPRYCPSIEDK+VRF E++ HQ F+EPEGL+T
Sbjct: 245 AYTNERSHDIIRSGLDRSPLYSGIIEGVGPRYCPSIEDKVVRFPEKDRHQTFIEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYP+G+ST+LP ++Q +F R+I GLE+V I+RP YAIEYDY++P +L  +LETK    
Sbjct: 305 VEVYPSGLSTSLPIDVQWKFYRSIAGLERVEIMRPAYAIEYDYVDPIQLHASLETKPARN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R D+YIGVMIDDL + G  E
Sbjct: 365 LYHAGQINGTSGYEEAAAQGLLAGINAALRVQGREPLILGRNDAYIGVMIDDLVTMGSKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYRMFTSRAEYR+ LR DNAD RL   G ++G +   R + +  ++++   ++  L+ L 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLRERGYEIGLV---RDEEYGIFLRKKEMIKEELQRLR 481

Query: 482 ---VLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              ++ S+        F   G     T  + L  PD +  +L  I     +  + V E++
Sbjct: 482 QEKLIPSQVDDDFLEDFDLKGMQNALTYEQLLRRPDVTSSDLSRIDEKIMETPADVREQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ +    K  E   IP+D  Y  L  LS E++EKL   KP  L QAS
Sbjct: 542 EIQIKYQGYIDRQLEQVGRAKKLEHTKIPQDMQYMGLSGLSAEVQEKLHKFKPDTLGQAS 601

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAA+ +L I +K
Sbjct: 602 RIPGVTPAAITILSIALK 619


>gi|309972266|gb|ADO95467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R2846]
          Length = 629

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/623 (47%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF K ++     R  L+++ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNKKMENIEQERQRLRNIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|332084593|gb|EGI89787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii 5216-82]
          Length = 629

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+D L
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDVL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|149925397|ref|ZP_01913661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Limnobacter sp. MED105]
 gi|149825514|gb|EDM84722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Limnobacter sp. MED105]
          Length = 650

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/622 (48%), Positives = 397/622 (63%), Gaps = 12/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARAGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNGSKGPAVRATRAQADRVLYRQAIRTRLENQHNLSIFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + +   V Q     +   VVLT GTFL G IH+G     AGR GD PS  L   
Sbjct: 127 DLLLDGDRVCGAVTQVGLKFKAKAVVLTAGTFLNGKIHVGLQNYSAGRAGDPPSIGLGMR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I +   ++Q  D   +P FS++ +   + RQ+ C IT
Sbjct: 187 LQEMKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPVPVFSYLGNTAMHPRQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL T+
Sbjct: 247 HTNQNTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   + +I GLE   I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 307 EYYPNGVSTSLPFDVQLNLLHSIKGLENAYIMRPGYAIEYDYFDPRALKTTLETKAIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A      D     R ++Y+GV++DDLTSKGV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGVNAALLVQGKDQWTPRRDEAYLGVLVDDLTSKGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLTPIG KLG + + R K F++  +     +  L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADQRLTPIGRKLGLVDDIRWKAFSEKREAVELEKQRLRSTWI 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS-------SLVI 533
             K ++      +  K   +    Y+ L  PD S Q+L ++  +    +       + +I
Sbjct: 487 NPKIVAQAEAERVLHKGIDREYNLYDLLKRPDVSYQDLSTLSKENGDLALSNPLEQTDLI 546

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            +L+IE  YA Y  RQ  E +     E   +P DFDYS +  LS E+++KL+  KP  + 
Sbjct: 547 SQLEIEVKYAGYVLRQQAEVERGAGNESIRLPADFDYSGVNGLSKEVQQKLNTHKPETIG 606

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA +I+G+TPAA++LLL+++KK
Sbjct: 607 QAGRIQGVTPAAISLLLVHLKK 628


>gi|332995988|gb|EGK15615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri VA-6]
          Length = 629

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +  +  +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|145629760|ref|ZP_01785555.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.1-21]
 gi|145638508|ref|ZP_01794117.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittII]
 gi|144977999|gb|EDJ87783.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.1-21]
 gi|145272103|gb|EDK12011.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittII]
 gi|309750012|gb|ADO79996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R2866]
          Length = 629

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/623 (47%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIKQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|194431209|ref|ZP_03063502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1012]
 gi|194420664|gb|EDX36740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1012]
 gi|332084728|gb|EGI89914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 155-74]
          Length = 629

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q +L + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPDLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVICSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|114332389|ref|YP_748611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosomonas eutropha C91]
 gi|122312971|sp|Q0ADD6|MNMG_NITEC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114309403|gb|ABI60646.1| glucose inhibited division protein A [Nitrosomonas eutropha C91]
          Length = 641

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/624 (46%), Positives = 401/624 (64%), Gaps = 9/624 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R +D+IV+GGGHAG EAA  AA++G  T L+T    T+G MSCNP+IGG+GKGHLV+EI
Sbjct: 4   SRDFDIIVVGGGHAGTEAALAAARMGQKTLLLTQNLDTLGQMSCNPSIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D AGIQFR LN  KGPAVR  R QADR LYR A+++ + +Q NL ++Q 
Sbjct: 64  DALGGAMAAAIDEAGIQFRTLNSSKGPAVRATRAQADRVLYRQAIRKRLEAQPNLLILQS 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V       + I+ +            VVLT GTFL G+ H+G     AGR GD  S  L
Sbjct: 124 TVDDLLLLDDKITGVATHLGITFSARAVVLTVGTFLGGLAHVGDRNFQAGRAGDPASIRL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +   + +   GRLKTGTP R+D +TI +    +Q  DE +  FSF+ +   + RQ+ C 
Sbjct: 184 AHRLREMNLSVGRLKTGTPPRIDARTIDFQFLREQPGDEPIPTFSFLGNTAQHPRQVSCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRTN +TH II   + HS +Y+G I+  GPRYCPSIEDK+VRF +R+ H +FLEPEGL 
Sbjct: 244 MTRTNEKTHEIIRAGLDHSPLYTGKIEGIGPRYCPSIEDKVVRFSDRDSHTVFLEPEGLE 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+L  E+Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LETK I 
Sbjct: 304 TSEIYPNGISTSLSFEVQVELVRSIAGLENAHITRPGYAIEYDYFDPRALKRSLETKAID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N++ K  + +  C SR ++Y+GV++DDL ++GV 
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGLNASLKIKEQESWCPSRDEAYLGVLVDDLVTRGVT 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ-----KRFAKYIQEYNFLRS 476
           EPYRMFTSRAE+R+ LR DNAD RLT  G + G + E+R      KR A   ++    R+
Sbjct: 424 EPYRMFTSRAEFRLQLREDNADMRLTEAGHQFGLVDEKRWQIFAAKREAIETEKARLRRT 483

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
            + + VL    L +   S + D ++ + YE L  P  S   L S+   ++      + ++
Sbjct: 484 WVPAGVL--HKLQTLQTSDQSDDRSYSLYELLRRPGISYTELVSLSEVESSMIDGRIAQQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+I+  Y  Y  RQ  E       E  ++PK+ DYS++  LSNE+ +KL+  +P  + QA
Sbjct: 542 LEIDVKYEGYVERQRQEVVRHTQHETMVLPKNLDYSTVRGLSNEVTQKLNQHQPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
           ++I G+TPAA++LLL+++K+   +
Sbjct: 602 ARISGITPAAISLLLVHLKRGMAR 625


>gi|332998035|gb|EGK17640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-272]
 gi|333013715|gb|EGK33080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-227]
          Length = 629

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWVRFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDYKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|257455888|ref|ZP_05621107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enhydrobacter aerosaccus SK60]
 gi|257446736|gb|EEV21760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enhydrobacter aerosaccus SK60]
          Length = 628

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/615 (49%), Positives = 386/615 (62%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVRE+DAL
Sbjct: 7   YDVIVIGGGHAGTEAALAAARMGQQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q    
Sbjct: 67  GGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRYTLENQPNLDIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E     ++V Q      C  VVLT+GTFL G IHIG      GR GD PS  L + 
Sbjct: 127 DILVENGKAVAVVTQSGIEFACGAVVLTSGTFLGGTIHIGLENHKGGRAGDPPSIRLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D +T+ +     Q  D  L   S++ D  +  RQI C IT 
Sbjct: 187 LRELKLPVGRLKTGTPPRIDARTVDFSVMTVQPGDTPLPVMSYLGDVSMHPRQINCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T  
Sbjct: 247 TNERTHDIIRSGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L P+LETK I  LF
Sbjct: 307 LYPNGISTSLPFDIQLALVRSMKGLENAHILRPGYAIEYDYFDPQNLKPSLETKSIDNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR++  LD     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGILAGLNAARRTQGLDAWTPRRDQAYIGVLVDDLITHGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R + ++  +       + L+SL  T
Sbjct: 427 RMFTSRAEYRLLLREDNADQRLTEIGRDLGLVDDARWQVYSDKMTAIEQETARLRSLWAT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             N    S   K      K   A + L  P+ S  ++  +       S+ V E+++I   
Sbjct: 487 PTNTLGQSFINKTGEVLTKENNALDLLKRPNVSFDDISELT--ESPVSAEVGEQIEIGVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ +E  ++K  E  LIP DF Y  +  LSNE+ +KL  ++P  L QAS+I G+
Sbjct: 545 YAGYIDRQQVEIGQMKKLEHTLIPDDFTYHDISGLSNEIVQKLEKVRPTTLAQASRISGV 604

Query: 602 TPAALNLLLIYIKKN 616
           TPAA+ LL + IKK+
Sbjct: 605 TPAAVQLLAMMIKKS 619


>gi|296284830|ref|ZP_06862828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citromicrobium bathyomarinum JL354]
          Length = 619

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 281/612 (45%), Positives = 384/612 (62%), Gaps = 5/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y +IVIGGGHAG EAA VAA++G    L+T   S IG+MSCNPAIGGLGKGHLVRE+DA 
Sbjct: 4   YPIIVIGGGHAGVEAACVAARMGVRVGLVTMDASKIGAMSCNPAIGGLGKGHLVREVDAF 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG++GR ADA  I +R+LN  KG AV GPR QADR+L+  A++ ++  +E LDVI GE A
Sbjct: 64  DGVLGRAADAGAIHYRMLNRSKGSAVWGPRVQADRKLFGAAVRAQVAGEETLDVIAGEAA 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   ++ + +   + I C   +L TGTFL GV+  G+     GR+ +  +  L   
Sbjct: 124 ALVLDGERVAGVELAGGTRIGCEAAILCTGTFLGGVLFRGEETFVGGRVREGSAARLAAQ 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      RLKTGTP RLDG+TI W + ++Q +D  +   S ++    N QI C ITRT
Sbjct: 184 LREAALPMARLKTGTPPRLDGRTIDWSRLDEQPSDPEVWTMSPLSRGRANPQIFCAITRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H II  N+  S +YSG I + GPRYCPSIEDKI RFG+R+GHQIFLEPEGL+T +V
Sbjct: 244 NARAHEIIRANLSRSPLYSGAIGAQGPRYCPSIEDKIDRFGDRDGHQIFLEPEGLDTPLV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP ++Q  F+R I GLE+V ++ PGYA+EYD+++P+ L   L+ + + GL+ 
Sbjct: 304 YPNGISTSLPADVQEDFLRAIDGLEQVRVVEPGYAVEYDHVDPRSLDRWLQMRSLPGLYC 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG+ +A      D     R +SYI VM+DDLT  GV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLVAGLRAASSVLGRDAPALDRANSYIAVMVDDLTLHGVTEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M T+RAEYR+ LR +NA  RLTP+ +++GC+ E R   F         + S L       
Sbjct: 424 MLTARAEYRLRLRANNASTRLTPLAIEVGCVHEERGAWFEARAAARADVESALAE-DHGP 482

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             + +       D   +   ++  +P  D S      + P  R+    ++E +  +  YA
Sbjct: 483 AQMRALGFGATDDAGRQPLRDWTRFPGIDLSALQYAGLVP--RETDPALLEEIGEDLHYA 540

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +E++  E+  +  DF +S +P LSNE+ E+LS  +P +L QA ++ G+TP
Sbjct: 541 PYIARQDAELRELRANEQVRLAPDFPFSQVPGLSNEMVERLSRARPDSLAQAGRVAGITP 600

Query: 604 AALNLLLIYIKK 615
           AA+  LL+Y +K
Sbjct: 601 AAMAALLVYARK 612


>gi|187732565|ref|YP_001882422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii CDC 3083-94]
 gi|238691693|sp|B2TUN4|MNMG_SHIB3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187429557|gb|ACD08831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii CDC 3083-94]
          Length = 629

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q     +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGGNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|113461841|ref|YP_719910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus somnus 129PT]
 gi|123327492|sp|Q0I5W4|MNMG_HAES1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|112823884|gb|ABI25973.1| glucose-inhibited division protein A [Haemophilus somnus 129PT]
          Length = 629

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/616 (48%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++   T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALATARMKLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR  ++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK+ ++ I  +     R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDIILEKDSVTGIETKMGLKFRAKSVVLTAGTFLAGKIHIGLENYAGGRAGDPASVNLAK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ+ DE+L  FSFM + +    QI C IT
Sbjct: 186 KLRDLNLRVNRLKTGTPPRIDARTINFDILAKQYGDEKLPVFSFMGSVEQHPEQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNDQTHDVIRKNLDRSPMYTGVIEGIGPRYCPSIEDKVIRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYDY +P++L  TLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMKIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKSTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKESWFPRRDQAYIGVLVDDLCTVGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLT I  KLG I + R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTSIARKLGLIDDIRWARFNQKMENIELERQRLRSIWL 485

Query: 484 T--SKNLSSTSISFKQDG-KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
              S+ L+  +   K    +     + L  P+ + Q L ++ P          +E+++I 
Sbjct: 486 HPRSEYLNEANEILKSPLIREVNGEDLLRRPEINYQILTALTPFKPAMEDKEAVEQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E   IP +FDY ++  LSNE+  KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIERQKRHENTAIPANFDYKNISGLSNEVCAKLEQYRPISIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA+++LL+ +KK
Sbjct: 606 GITPAAISILLVNLKK 621


>gi|294638360|ref|ZP_06716613.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda ATCC 23685]
 gi|291088613|gb|EFE21174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda ATCC 23685]
          Length = 629

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/621 (47%), Positives = 391/621 (62%), Gaps = 15/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   + Q     R   VVLT GTFL G IHIG      GR GD PS  L + 
Sbjct: 127 DLIVENDRVVGAITQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI      +Q  D     FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDLAALAQQHGDNPAPVFSFLGDASQHPRQLPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMDGMQNARIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R + +L+     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAAELEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R   F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDERWAHFNRKLENMERERQRLRDTWVH 486

Query: 484 -------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
                  T   L  T +S + +G+     + L  P+     L S+ P A         E+
Sbjct: 487 PQAEQAATINALLKTPLSREANGE-----DLLRRPEMDYAALTSLAPFAPPLEDRQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYQGYIARQQDEIEKQMRNEHTLLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGITPAAISILLVWLKKQ 622


>gi|157144377|ref|YP_001451696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter koseri ATCC BAA-895]
 gi|166222924|sp|A8ACP7|MNMG_CITK8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157081582|gb|ABV11260.1| hypothetical protein CKO_00081 [Citrobacter koseri ATCC BAA-895]
          Length = 629

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG     +GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSSGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+ P A     +   E+++I+ 
Sbjct: 487 PSAESAGEVNAHLTAPLSREASGEDLLRRPEMTYAQLTSLTPFAPGLDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|21961160|gb|AAM87686.1|AE014015_11 glucose-inhibited division protein [Yersinia pestis KIM 10]
 gi|45438630|gb|AAS64176.1| glucose inhibited division protein A [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 656

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/616 (48%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 34  FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 93

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V 
Sbjct: 94  GGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPVE 153

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 154 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 213

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 214 LRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHITY 273

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 274 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 333

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 334 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 393

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EPY
Sbjct: 394 FAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 453

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + + 
Sbjct: 454 RMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWVH 513

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L S+       +     ++++I+ 
Sbjct: 514 PHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQV 573

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 574 KYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRISG 633

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 634 ITPAAISILLVWLKKQ 649


>gi|283836165|ref|ZP_06355906.1| hypothetical protein CIT292_10591 [Citrobacter youngae ATCC 29220]
 gi|291068359|gb|EFE06468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter youngae ATCC 29220]
          Length = 629

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q +D  +  FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLSQQNSDNPMPVFSFLGDVAQHPRQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR S + D     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLSAEKDGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLERIEQERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  PD +   L S+   A     +   E+++I+ 
Sbjct: 487 PLAESAAEVNAHLATPLSREASGEDLLRRPDMTYAQLTSLSAFAPALDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E +  +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIERQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|90409269|ref|ZP_01217371.1| glucose-inhibited division protein A [Psychromonas sp. CNPT3]
 gi|90309629|gb|EAS37812.1| glucose-inhibited division protein A [Psychromonas sp. CNPT3]
          Length = 628

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/624 (47%), Positives = 403/624 (64%), Gaps = 5/624 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVI+IGGGHAG EAAA +A++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E+
Sbjct: 4   HEHFDVIIIGGGHAGTEAAASSARMGLNTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLM    D AGIQFR LN  KGPAVR  R QADR LY+ A++ ++ +QENL + Q 
Sbjct: 64  DALGGLMANATDKAGIQFRTLNSSKGPAVRATRAQADRLLYKAAIREKLENQENLKIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E + ++ +V +        +VVLT GTFL G+IHIG      GR GD  S  L
Sbjct: 124 EVEDLIVENDQVTGVVTKMGVKFSAKSVVLTVGTFLNGLIHIGLKNYSGGRAGDPASIGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                      GRLKTGTPAR+D ++I +   E Q  D  +  FSFM     + RQI C 
Sbjct: 184 AQRLKDLPIRMGRLKTGTPARIDARSIDFSVLEVQHGDTPIPTFSFMGKASDHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  ++  S +Y+G I   GPRYCPSIEDKI+RF ++N HQIF+EPEGL 
Sbjct: 244 ITHTNEKTHDIIRNSLDRSPMYTGVIDGVGPRYCPSIEDKIMRFADKNSHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q +FI+++ G E   + RPGYAIEYDY +P++L  TLE+K I 
Sbjct: 304 THEVYPNGISTSLPFDVQIEFIQSMKGFENAFLTRPGYAIEYDYCDPRDLKSTLESKYIH 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+A  S   +     R ++Y+GV+IDDL++ G  
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGMNAALYSQDKEGWSPRRNEAYLGVLIDDLSTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD+RLT IG + G I + R K F++  +        LK  
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADSRLTAIGREYGVIDDARWKMFSEKQETIELESQRLKGQ 483

Query: 482 VLTSKNLSSTSIS--FKQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +   ++++  I+   KQ  +  +  E  +  P+    +L +I       S     E+++
Sbjct: 484 WVNPNSVNAAQINALLKQPMQRESTLEAMIRRPEIKYLDLMNIEGLGPAVSDPKAAEQIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+ E ++ K  E  L+P D DY  +  LSNE   KL+ +KP ++ +AS+
Sbjct: 544 IKIKYQGYIDRQLDEIEKSKRNENTLLPLDIDYQIVKGLSNEAIAKLNEMKPESIGKASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+TPAA+++LLIY+KKN ++ N
Sbjct: 604 IPGITPAAISILLIYLKKNGLRRN 627


>gi|89092258|ref|ZP_01165212.1| glucose inhibited division protein A [Oceanospirillum sp. MED92]
 gi|89083346|gb|EAR62564.1| glucose inhibited division protein A [Oceanospirillum sp. MED92]
          Length = 631

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/618 (47%), Positives = 399/618 (64%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A++GA T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   YDVIVIGGGHAGTEAALASARIGAKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M R  D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +Q+NLD+ Q    
Sbjct: 67  DGAMARATDKGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHILENQDNLDIFQQSAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  +V Q       ++VVLT GTFL GVIHIG      GR GD PS +L + 
Sbjct: 127 DLITEGEAVRGVVTQTGIRFHANSVVLTAGTFLGGVIHIGLENHSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
             +  F   RLKTGTP R+D +++ +   ++Q  D      S+M  K+T+  +QI C IT
Sbjct: 187 LRELPFRVDRLKTGTPPRIDARSVDFSVMQEQPGDTPTPVMSYM-GKLTDHPQQISCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH I+   +  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQ+F+EPEGL T 
Sbjct: 246 HTNERTHEILRSGLDRSPMYTGVIEGVGPRYCPSIEDKIMRFADKDQHQVFVEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP +IQ   +++I G E  +I+RPGYAIEYD+ NP++L  TLETK ++GL
Sbjct: 306 ELYPNGISTSLPFDIQLAAVQSIRGFENAHIVRPGYAIEYDFFNPQDLKHTLETKYMNGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A +S +       R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGANAALRSLEKAQWYPRRDEAYIGVLVDDLITLGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG +GE R + F    +     +  LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLVGEERWQAFCNKREAIEQEQQRLKSTWI 485

Query: 484 TSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             K   +  ++ K        Y   + L  P+    +L  +  +       V E+++I++
Sbjct: 486 LPKTPEADELAPKLKTPLTREYNLADLLKRPELVYSDLAHLKGEGVS-DEQVAEQVEIQN 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++++ +E   +P+DFDY  +  LSNELK KL  ++P  + QAS+I+G
Sbjct: 545 KYEGYISRQKDEIEQMRRQENTPLPEDFDYEKVGGLSNELKAKLQEVRPATIAQASRIQG 604

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLL+Y+KK  +
Sbjct: 605 ITPAAISLLLVYLKKQQL 622


>gi|190571050|ref|YP_001975408.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019571|ref|ZP_03335377.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|238058369|sp|B3CLI3|MNMG_WOLPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|190357322|emb|CAQ54751.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994993|gb|EEB55635.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 682

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 316/676 (46%), Positives = 415/676 (61%), Gaps = 63/676 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAGCEAA  AA+LGAST LITHK STIG MSCNPAIGG+ KG +VRE+DAL
Sbjct: 4   YDVVVVGGGHAGCEAATAAARLGASTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR  D A I   VLN  +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V 
Sbjct: 64  DGIMGRAIDRASIHSVVLNGSRGAAVWGPRAQADRKLYKKAIQEIILNYNNLTVKEESVD 123

Query: 126 GFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            F  E     ++ I +++      I  S VVLTTGTFLRGVIHIG+   P+GR+GD P+ 
Sbjct: 124 DFLIESDSNGESYIKAVITDSGERILTSRVVLTTGTFLRGVIHIGEQTTPSGRIGDKPAI 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L N+  K+DF  GRL+TGTP RLD  TI W   ++Q  D    PFS++T+KI   Q+ C
Sbjct: 184 ELANTLKKYDFKLGRLRTGTPPRLDRGTINWSVLQEQVGDNPPTPFSYLTEKINQPQVSC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  THR+I EN+  SA    D     PRYCPSIE K+ +F E+N HQIFLEPEG+
Sbjct: 244 FITHTNEHTHRVIRENLHRSASSYLD-NVIAPRYCPSIETKVKKFAEKNNHQIFLEPEGI 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + + +YPNGIS +LP E+Q++ I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+
Sbjct: 303 DDNTIYPNGISNSLPIEVQYEMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAA QG++AGIN+A   ++       RTDSYIGVMIDDL +KG+
Sbjct: 363 KGLYFAGQINGTTGYEEAAGQGIIAGINAALSLSQ-KSFVLHRTDSYIGVMIDDLVTKGI 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+++R DNAD RLT  G  +  +   R       ++    L   L+S
Sbjct: 422 TEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQGKLKSIKQLEEKLES 481

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV-------- 532
           L +T + L S  I    DG  +TA + L YP+     L  I P+    SS+         
Sbjct: 482 LTITPEQLRSYGIKISYDGIRKTALDLLGYPNIDWNKLREIWPELNMGSSVSYLHNAKAP 541

Query: 533 ----------IERLQIESSYAAYTGRQM-------------------------IEAK--- 554
                     I+ L  +   A  T + +                         IEAK   
Sbjct: 542 LPVIQVADTGIQYLNDDGMDAVDTEKNVDSSVMCWNNTITDSIAKNEIYEAVAIEAKYKP 601

Query: 555 -------EIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
                  ++KF ++ +   IP +F+YS +  LS E+ EKL  +KP  +  A +I+G+TPA
Sbjct: 602 YLVRQEADMKFLQEEVNTQIPTNFNYSQIKGLSTEVIEKLQSIKPATIGIAKQIQGITPA 661

Query: 605 ALNLLLIYIKKNTVKL 620
           A+  +L+Y++    K+
Sbjct: 662 AIVSILVYLRNKKTKI 677


>gi|323189526|gb|EFZ74806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli RN587/1]
          Length = 629

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  + AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIEQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P +   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFSPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|52426409|ref|YP_089546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mannheimia succiniciproducens MBEL55E]
 gi|81170554|sp|Q65PZ9|MNMG_MANSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52308461|gb|AAU38961.1| GidA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 629

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/621 (46%), Positives = 400/621 (64%), Gaps = 13/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   NYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVKVALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     +  +V+LT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVATRMGLKFKTKSVILTAGTFLGGKIHIGLDNYTGGRAGDPASIALAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP RLD +TI +D   KQ  D +L  FSFM     + RQI C IT
Sbjct: 186 RLRDLNLRVARLKTGTPPRLDARTINFDILAKQHGDAQLPVFSFMGSVDQHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL + 
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSQ 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYD+ +P++L PTLETK I GL
Sbjct: 306 EIYPNGISTSLPFDVQMKIVNSMVGLEKTRIVKPGYAIEYDFFDPRDLKPTLETKAIKGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAASQGLLAGINAGLFVQEKESWFPRRDQAYMGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + ++     R  L+++ +
Sbjct: 426 YRVFTSRAEYRLLLREDNADSRLTPIAHELGLIDENRWARFNQKMENIERERQRLRNIWI 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             ++        + S+ +  +  G+       ++Y   +  +LF    D ++     +E+
Sbjct: 486 HPRSEHLDVINEVLSSPLVREASGEDLLRRPEINYQILTALDLFKPAMDDKE----AVEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E ++ K  E   IP +FDY+ +  LSNE++ KL   +P ++ QA
Sbjct: 542 VEIAVKYQGYIEHQQEEIEKQKRHENTAIPDNFDYTLVAGLSNEVRAKLEQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+ +KK 
Sbjct: 602 SRISGVTPAAISILLVNLKKQ 622


>gi|261491714|ref|ZP_05988294.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495536|ref|ZP_05991983.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308870|gb|EEY10126.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312553|gb|EEY13676.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 630

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 302/618 (48%), Positives = 388/618 (62%), Gaps = 5/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ YDVIV+GGGHAG EAA   A++G  T ++TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q 
Sbjct: 64  DAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRVLYRNAVRTALENQPNLDIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E N     V +     +   VVLT GTFL G IHIG      GR GD  +  L
Sbjct: 124 EVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATML 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +     +    RLKTGTP RLD +TI +D   KQ  DE L  FSFM D   + RQI C 
Sbjct: 184 ADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVFSFMGDVSQHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGLN
Sbjct: 244 ITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I 
Sbjct: 304 TIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AGIN A +    +    +R  +Y GV++DDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAGAQGLLAGINVALQVQGKEAWYPTRDQAYTGVLVDDLCTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RLTP   +LG I E R  RF + ++     R+ LKS 
Sbjct: 424 EPYRVFTSRAEYRLLLREDNADIRLTPKAHELGLIDEARWVRFNQKMEAIEQERARLKST 483

Query: 482 V--LTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
              L   NL   +        +  +  + +  P+ S + L  I   A         E+++
Sbjct: 484 WAHLQMPNLDELNALLANPLAREASGEDLIRRPEMSYEKLTQIALFAPAIEDKQAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+
Sbjct: 544 IAIKYQGYIEHQYNEIERHKRHENTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+++LL+ +KK
Sbjct: 604 ISGITPAAISILLVNLKK 621


>gi|51598260|ref|YP_072451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis IP 32953]
 gi|108810165|ref|YP_654081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Antiqua]
 gi|108814147|ref|YP_649914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Nepal516]
 gi|145601143|ref|YP_001165219.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Pestoides F]
 gi|150260936|ref|ZP_01917664.1| glucose inhibited division protein A [Yersinia pestis CA88-4125]
 gi|161484718|ref|NP_671435.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM 10]
 gi|161511281|ref|NP_995299.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis biovar Microtus str. 91001]
 gi|162421890|ref|YP_001608482.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Angola]
 gi|165926144|ref|ZP_02221976.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939987|ref|ZP_02228524.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009678|ref|ZP_02230576.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213177|ref|ZP_02239212.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401658|ref|ZP_02307152.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422861|ref|ZP_02314614.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425519|ref|ZP_02317272.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468637|ref|ZP_02333341.1| glucose-inhibited division protein A [Yersinia pestis FV-1]
 gi|170026421|ref|YP_001722926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis YPIII]
 gi|186897459|ref|YP_001874571.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis PB1/+]
 gi|218931106|ref|YP_002348981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis CO92]
 gi|229839841|ref|ZP_04460000.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841925|ref|ZP_04462081.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229896802|ref|ZP_04511965.1| glucose-inhibited cell-division protein [Yersinia pestis Pestoides
           A]
 gi|229904691|ref|ZP_04519802.1| glucose-inhibited cell-division protein [Yersinia pestis Nepal516]
 gi|270488401|ref|ZP_06205475.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM D27]
 gi|294505652|ref|YP_003569714.1| glucose-inhibited division protein A [Yersinia pestis Z176003]
 gi|21263668|sp|Q8Z9R8|MNMG_YERPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170592|sp|Q663P9|MNMG_YERPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123072470|sp|Q1C086|MNMG_YERPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123246082|sp|Q1CCG6|MNMG_YERPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166224339|sp|A4TSI4|MNMG_YERPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831572|sp|B1JR32|MNMG_YERPY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238687314|sp|A9R5U9|MNMG_YERPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238691428|sp|B2K7J2|MNMG_YERPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51591542|emb|CAH23214.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           IP 32953]
 gi|108777795|gb|ABG20314.1| glucose inhibited division protein A [Yersinia pestis Nepal516]
 gi|108782078|gb|ABG16136.1| glucose inhibited division protein A [Yersinia pestis Antiqua]
 gi|115349717|emb|CAL22698.1| glucose inhibited division protein A [Yersinia pestis CO92]
 gi|145212839|gb|ABP42246.1| glucose inhibited division protein A [Yersinia pestis Pestoides F]
 gi|149290344|gb|EDM40421.1| glucose inhibited division protein A [Yersinia pestis CA88-4125]
 gi|162354705|gb|ABX88653.1| glucose-inhibited division protein A [Yersinia pestis Angola]
 gi|165912113|gb|EDR30753.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922004|gb|EDR39181.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991600|gb|EDR43901.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205475|gb|EDR49955.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958253|gb|EDR55274.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049040|gb|EDR60448.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055533|gb|EDR65326.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752955|gb|ACA70473.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           YPIII]
 gi|186700485|gb|ACC91114.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678809|gb|EEO74914.1| glucose-inhibited cell-division protein [Yersinia pestis Nepal516]
 gi|229691264|gb|EEO83317.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696207|gb|EEO86254.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700240|gb|EEO88276.1| glucose-inhibited cell-division protein [Yersinia pestis Pestoides
           A]
 gi|262363817|gb|ACY60538.1| glucose-inhibited division protein A [Yersinia pestis D106004]
 gi|262367753|gb|ACY64310.1| glucose-inhibited division protein A [Yersinia pestis D182038]
 gi|270336905|gb|EFA47682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM D27]
 gi|294356111|gb|ADE66452.1| glucose-inhibited division protein A [Yersinia pestis Z176003]
 gi|320017466|gb|ADW01038.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 629

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/616 (48%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L S+       +     ++++I+ 
Sbjct: 487 PHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|319778790|ref|YP_004129703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Taylorella equigenitalis MCE9]
 gi|317108814|gb|ADU91560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Taylorella equigenitalis MCE9]
          Length = 631

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 313/629 (49%), Positives = 409/629 (65%), Gaps = 22/629 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A+ GA T L+TH   TIG MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALASARTGAKTLLLTHNIETIGQMSCNPSIGGIGKGHLVKELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQFR+LN  KGPAVR  R QADR LY+ A++ +I +Q+NL V Q  
Sbjct: 65  ALGGAMALAADEAGIQFRILNSSKGPAVRATRIQADRLLYKQAIRSKIENQQNLFVFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q     +  +VVLT GTFL G+IHIG      GR GD PS SL 
Sbjct: 125 VEDLILEGDTVVGAITQIGYKFKSKSVVLTAGTFLNGLIHIGLTHYKGGRAGDPPSKSLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECG 241
           +   +     GRLKTGTP RLD ++I + K  +Q  D   IP FSFM ++++  +QI C 
Sbjct: 185 DRLKELKLPQGRLKTGTPPRLDSRSIDFSKLIEQKGDTNPIPVFSFMGSEEMHPKQISCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH IIME +  S +Y+G I   GPRYCPSIEDKI RF  R+ HQIFLEPEGL 
Sbjct: 245 ITHTNPNTHEIIMEGLDRSPLYTGVIDGVGPRYCPSIEDKIHRFSHRDSHQIFLEPEGLL 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +YPNG+ST+LP +IQ +FI++I GLE   I+RPGYAIEYDY +P+E+  +LETK I 
Sbjct: 305 TNEIYPNGMSTSLPFDIQLRFIQSINGLENAYILRPGYAIEYDYFDPREIKGSLETKSIK 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +Y+GV+IDDL +KGV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLIAGLNAARYTRGEEPWYPRRDQAYLGVLIDDLITKGVS 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LK 479
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + ++R + F K  +  N  R +  L+
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADYRLTEIGRKLGLVDDQRWETFDK--KRENIEREIQRLR 482

Query: 480 SLVLTSKNLSSTSI------SFKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDAR 526
              LTSK +S+  +       F++D    T  + L  P+ S + L ++          + 
Sbjct: 483 DFRLTSKLISNDEVISKFGKPFEKD---YTLEDLLKRPNISYEMLMNLNLSGDISAKSST 539

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             +   IE+++I++ Y  Y  RQ  E       E   IPK  +Y  L  LS E+++KL  
Sbjct: 540 NLTDKEIEQIEIQTKYQGYISRQKEEVDRTLNYENLRIPKGINYDDLVHLSFEVRQKLKE 599

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             P  + QAS+I G+TPAA++LLLI+IK+
Sbjct: 600 HMPETIGQASRISGVTPAAISLLLIHIKR 628


>gi|229847407|ref|ZP_04467507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 7P49H1]
 gi|229809645|gb|EEP45371.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 7P49H1]
          Length = 629

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/623 (47%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHTTDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSY 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ +D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHSDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L+++ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRNIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +  +  + L  P+ +   L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP +FDYS + +LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSSLSNEVRAKLEQHRPVSIS 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|242241378|ref|YP_002989559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dickeya dadantii Ech703]
 gi|242133435|gb|ACS87737.1| glucose inhibited division protein A [Dickeya dadantii Ech703]
          Length = 629

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 393/620 (63%), Gaps = 13/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q     R  TVVLT GTFL G IHIG      GR GD PS +L   
Sbjct: 127 DLIVENDRVVGVVTQMGLKFRARTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSF+ D   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTQQHGDNPMPVFSFLGDASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEHTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYDY +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMQGMENARIVRPGYAIEYDYFDPRDLKQTLESKYIAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYLGVLVDDLCTLGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRQLGMVDDERWARFNEKLENIEKERQRLRGIFVH 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            ++        L  T +S +  G+       + Y   +   +FS         +   E++
Sbjct: 487 PQSGQIEQVNVLLKTPLSREASGEDLLRRPEIDYAMLTRLPMFSPA----LVDAQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E  +    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 543 EIQVKYEGYIARQQDEIDKQSRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPSSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+++LL+++KK 
Sbjct: 603 RISGITPAAISILLVWLKKQ 622


>gi|88797178|ref|ZP_01112768.1| glucose-inhibited division protein A [Reinekea sp. MED297]
 gi|88780047|gb|EAR11232.1| glucose-inhibited division protein A [Reinekea sp. MED297]
          Length = 628

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A+ GA T L+TH   TIG MSCNPAIGG+GK HLV+EID
Sbjct: 5   KQFDVIVIGGGHAGTEAALASARTGAQTLLLTHNIDTIGVMSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D AGIQ+R+LN +KGPAVR  R QADR+LYR A+++ + SQ NL++    
Sbjct: 65  ALGGAMARATDLAGIQWRILNSRKGPAVRATRAQADRQLYRAAIRQIVESQPNLEIFAQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + + +   V Q    I    VVLT GTFL G IH+G      GRMGD+PS SL 
Sbjct: 125 ADDLILDGDRVVGAVTQTGIRILAKAVVLTAGTFLNGKIHVGTDNYAGGRMGDTPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECG 241
               +    TGRLKTGTPAR+D +++ +    +Q  D  L   S++  ++ +  RQI C 
Sbjct: 185 ERLKELPIRTGRLKTGTPARIDARSVDFSVMTEQPGDAPLPVMSYI-GRVEDHPRQISCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I+ T  +TH II  N+  SA++SG+I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL 
Sbjct: 244 ISHTTEQTHDIIRSNLDRSAMFSGNIEGTGPRYCPSIEDKITRFADKDSHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q  FIRTI G E  +I RPGYAIEYDY NP++L  +LE+K I 
Sbjct: 304 TYELYPNGISTSLPFDVQVSFIRTIRGFENAHITRPGYAIEYDYYNPQDLKHSLESKFIG 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEA AQGL+AG+N+ARK+ + D     R ++YIGV++DDL + G  
Sbjct: 364 SLFFAGQINGTTGYEEAGAQGLLAGLNAARKAREQDVWYPRRDEAYIGVLVDDLITMGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R   F    +     ++ +K+ 
Sbjct: 424 EPYRMFTSRAEHRLLLREDNADARLTETGRQLGLVDDERWSAFCTKQENIAREQARVKTT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +     ++  IS K        +   + L  P+    ++ +  P     S    E+++I
Sbjct: 484 YIQPNTAAAAQISEKLPQPLTREFSLGDLLKRPELGYSDIAAAMPPEAPLSLYEAEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  RQ  E + +K  E   +P+  D  S+  LSNE+K+KL  ++P  L QAS+I
Sbjct: 544 SAKYEGYIQRQQDEIESLKRHENTRLPETLDIDSIGGLSNEVKQKLKEVRPETLAQASRI 603

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+TPAA+++LL++IKK+
Sbjct: 604 SGVTPAAVSMLLVHIKKH 621


>gi|153206122|ref|ZP_01945385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii 'MSU Goat Q177']
 gi|165918750|ref|ZP_02218836.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 334]
 gi|212217717|ref|YP_002304504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii CbuK_Q154]
 gi|120577252|gb|EAX33876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii 'MSU Goat Q177']
 gi|165917578|gb|EDR36182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 334]
 gi|212011979|gb|ACJ19359.1| glucose inhibited division protein A [Coxiella burnetii CbuK_Q154]
          Length = 627

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 302/620 (48%), Positives = 403/620 (65%), Gaps = 9/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVIV+GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIVVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +  +   RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSDQPLPLMSYWSHGEDRPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN HQ+FLEPEGLN
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q  FI +I GLEK +I RPGYAIEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSIS--FKQ-DGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIER 535
            +  K+  + +I   F+Q   +  +A + L  P+ +   L  I    P   + S  V E+
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPS--VAEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QA
Sbjct: 543 IDIQAKYEGYLTHQLAEIDRQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LLL+++KK
Sbjct: 603 SRIPGITPAAISLLLVHLKK 622


>gi|332970828|gb|EGK09807.1| glucose inhibited division protein A [Psychrobacter sp. 1501(2011)]
          Length = 642

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/613 (48%), Positives = 389/613 (63%), Gaps = 9/613 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 16  KSYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 76  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDLFQQG 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E     ++V     + R  TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 136 ADDILVENGKACAVVTSTGIIFRTKTVVLTSGTFLGGVIHIGLDNSKGGRAGDQPSIKLA 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTPAR+D +T+ +   + Q  D  L   SFM +  +   Q+ C I
Sbjct: 196 ERLSELKLPVGRLKTGTPARIDARTVDFSVMKVQPGDTPLPVMSFMGNVDMHPEQVNCFI 255

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +++  S ++SG+I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 256 THTNEKTHDIIRQHLDRSPLFSGNIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 315

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FIRT+ GLE  +I RPGYAIEYDY NP+ L PTLETK I  
Sbjct: 316 HELYPNGISTSLPFDVQLEFIRTMAGLENAHITRPGYAIEYDYFNPQSLKPTLETKSIDS 375

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNK---LDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AGIN+A  +     +D     R  +Y+GV++DDL + G
Sbjct: 376 LYFAGQINGTTGYEEAGVQGLLAGINAALSTQDNPVMDSWTPRRDQAYLGVLVDDLITHG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD+RLT IG KLG + + R + +   ++        LK
Sbjct: 436 TKEPYRMFTSRAEYRLLLREDNADHRLTEIGRKLGLVDDTRWEAYQNKMESIGAESGRLK 495

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L  T  N      + +      K  TAY+ L  P+    ++  I       ++ V E++
Sbjct: 496 ELWATPNNELGKKFAERTGESLSKESTAYDLLKRPNVGFDDIAVIT--GADVAADVGEQI 553

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDYS++  LSNE+ +KL  ++P  L QAS
Sbjct: 554 EISVKYAGYIDRQQEDIDQMKRLENTELPVDFDYSAVSGLSNEIVQKLQDIRPATLAQAS 613

Query: 597 KIEGMTPAALNLL 609
           +I G+TPAA+ LL
Sbjct: 614 RISGVTPAAIQLL 626


>gi|187476515|ref|YP_784539.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bordetella avium 197N]
 gi|123515352|sp|Q2L2T3|MNMG_BORA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115421101|emb|CAJ47585.1| glucose inhibited division protein A [Bordetella avium 197N]
          Length = 637

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/623 (48%), Positives = 402/623 (64%), Gaps = 13/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARSGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +QENL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRHRLENQENLWLFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G+IH+G      GR GD P+NSL   
Sbjct: 127 DLIVEGDKVVGAVTQIGLKFRGRAVVLTAGTFLNGLIHVGLQHYSGGRAGDPPANSLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E+Q  D   IP FSFM +  +  RQ+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTINYSVLEEQPGDLDPIPVFSFMGSAALHPRQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL+T 
Sbjct: 247 HTNERTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKPSHQIFLEPEGLDTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  +LETK ISGL
Sbjct: 307 EVYPNGVSTSLPFDVQYELIHSLPGLEHAHILRPGYAIEYDYFDPRGLKSSLETKAISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+AR ++  +     R ++Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAARYASDREAWVPRRDEAYLGVLVDDLVTRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADLRLTEIGRELGLVDDIRWDVFNRKRDAIQAEVQRLQSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SSLV 532
             + L    + ++  K   +     + L  P+ S + L      A +           ++
Sbjct: 487 NPRLLPEEPAQALLGKAIEREYALADLLKRPNISYEALMQARNGAGELLAGPGLLGDDVL 546

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P  +
Sbjct: 547 AEQVEIQIKYAGYIERQRDEVQKHVVHEQQAIPADIDYDAVSSLSFEVRQKLKTHRPETV 606

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA++I G+TPAA++LLLI++K+
Sbjct: 607 GQAARISGVTPAAVSLLLIHLKR 629


>gi|154707156|ref|YP_001423623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii Dugway 5J108-111]
 gi|161511216|ref|NP_820901.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 493]
 gi|161831260|ref|YP_001597739.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 331]
 gi|212211701|ref|YP_002302637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii CbuG_Q212]
 gi|30581060|sp|P94613|MNMG_COXBU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039337|sp|A9KBS8|MNMG_COXBN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039338|sp|A9NBA8|MNMG_COXBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154356442|gb|ABS77904.1| glucose inhibited division protein A [Coxiella burnetii Dugway
           5J108-111]
 gi|161763127|gb|ABX78769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 331]
 gi|206584175|gb|AAO91415.2| glucose inhibited division protein A [Coxiella burnetii RSA 493]
 gi|212010111|gb|ACJ17492.1| glucose inhibited division protein A [Coxiella burnetii CbuG_Q212]
          Length = 627

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 302/620 (48%), Positives = 403/620 (65%), Gaps = 9/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVIV+GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIVVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +  +   RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSDQPLPLMSYWSHGEDRPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN HQ+FLEPEGLN
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q  FI +I GLEK +I RPGYAIEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSIS--FKQ-DGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIER 535
            +  K+  + +I   F+Q   +  +A + L  P+ +   L  I    P   + S  V E+
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPS--VAEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QA
Sbjct: 543 IDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LLL+++KK
Sbjct: 603 SRIPGITPAAISLLLVHLKK 622


>gi|119475231|ref|ZP_01615584.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2143]
 gi|119451434|gb|EAW32667.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2143]
          Length = 630

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/614 (48%), Positives = 394/614 (64%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA   +A++G  T L+TH   T+G MSCNPAIGG+GK HLVREIDAL
Sbjct: 7   FDVIVIGGGHAGTEACLASARMGCKTLLLTHNIETLGQMSCNPAIGGIGKSHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D+ GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMARATDSGGIQFRILNARKGPAVRATRAQADRVLYKAAIREILENQPNLSIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +S IV Q        TV+L+TGTFL G IHIG      GR GD PS +L   
Sbjct: 127 DLIIEGDQVSGIVTQMGLKFFAPTVILSTGTFLGGKIHIGLDNHSGGRAGDPPSITLAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F+  RLKTGTP R+D +++ +   E+Q+ D+     SF+     +  Q  C IT 
Sbjct: 187 LRELPFNVDRLKTGTPPRIDARSVDFSDLEEQWGDKPEPVMSFLGSLSHHPEQTCCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II + +  S +Y+G I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL T  
Sbjct: 247 TNEKTHEIIRQGLDRSPMYTGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLKTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIKGFEQAHIARPGYAIEYDYFDPRDLKYSLETKFIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+  K    D  C  R ++YIGVMIDDL + G +EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAGLKVQGKDTWCPRRDEAYIGVMIDDLITMGTMEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R K F++  +  +     L+S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRQLGVVDDDRWKIFSEKRESIDKEIKRLESTWIQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K +    ++   D      Y   + +  P  +  ++  I     K    V E+++I+  
Sbjct: 487 PKTVEGDIVNSLVDQAITREYSLKDLVKRPGVNYIDVAGIKGTVTK-DPQVAEQVEIQIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y GRQ  E   ++  E    P DFDY S+  LSNE+KEKLS  +P  L +A++I G+
Sbjct: 546 YAGYIGRQADEIARLRRHENTKFPNDFDYHSIEGLSNEVKEKLSKYRPETLARAARIPGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLL+++KK
Sbjct: 606 TPAAISLLLVFLKK 619


>gi|312221220|emb|CBY01161.1| similar to tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme gidA [Leptosphaeria maculans]
          Length = 693

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 394/625 (63%), Gaps = 19/625 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDV+VIGGGHAGCEA+A +A+ GA TALIT     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPYDVVVIGGGHAGCEASAASARTGARTALITPSLDNLGVCSCNPSFGGIGKGTMLREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ EIL  + L V+ G 
Sbjct: 100 ALDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRSLYKKYMKEEILGYQGLSVVPGS 159

Query: 124 VAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA    +++           I+ + ++   ++    VV+TTGTFL G IHIG    P+GR
Sbjct: 160 VADIIVDRSDEARREGRYGRITGVRLESGELVMTENVVITTGTFLGGEIHIGLEAFPSGR 219

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S     F  GRLKTGTP RLDGKTI +   + Q  D+  +PFS++ D++
Sbjct: 220 MGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDGKTIDYKVLDAQEGDDPPMPFSYLNDRV 279

Query: 234 TNRQIECGI----TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
              Q+E  +    TRTN  +H II +N+  S      +K  GPRYCPS+E K++RF ++ 
Sbjct: 280 ---QVENQLLNYETRTNEASHDIIRKNLDKSIHIRETVK--GPRYCPSLESKVIRFADKT 334

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H ++LEPEG +TDV+YPNGIS  +P ++Q   ++TI GLE V +++PGY +EYDY++P+
Sbjct: 335 SHIVWLEPEGFDTDVIYPNGISCTVPADVQLAMLKTIKGLENVKVLQPGYGVEYDYVDPR 394

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TLETK ISGLFLAGQINGTTGYEEAA QG+VAGIN+  KS   D +  SR D YIG
Sbjct: 395 HLRSTLETKNISGLFLAGQINGTTGYEEAAGQGIVAGINAGLKSLHKDPLVLSRADGYIG 454

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFTSR+EYR+S R DNAD RLTP+G   G I   R   +    Q
Sbjct: 455 IMIDDLITKGVSEPYRMFTSRSEYRMSSRADNADTRLTPLGHAAGVITNTRWSAYTSERQ 514

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           +   L  LL+S  L+    +    + + D   R+AYE L  PD S  +L  + P  + F 
Sbjct: 515 QIEALTQLLQSKTLSWTAWNEAGHAVRNDSTKRSAYEILRLPDTSPTDLIPLLPQIKDFP 574

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +  R+ I ++YA Y   Q         +E   +P D +Y ++  LS E K  L + +P
Sbjct: 575 ERIRNRVHINATYAPYVAYQAAAQARWLRDEHLRLPADIEYENIFGLSFEEKRALEVARP 634

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
            ++  A ++EG+TP     LL +++
Sbjct: 635 ESVGMARRVEGVTPTGALRLLQFVR 659


>gi|78224742|ref|YP_386489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter metallireducens GS-15]
 gi|123570637|sp|Q39PR0|MNMG_GEOMG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78195997|gb|ABB33764.1| Glucose-inhibited division protein A subfamily [Geobacter
           metallireducens GS-15]
          Length = 624

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/618 (48%), Positives = 399/618 (64%), Gaps = 9/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+G GHAGCEAA  AA++G  T L+T     I  MSCNPAIGG  KGHLV+EI
Sbjct: 7   DKQYDVIVVGAGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGSAKGHLVKEI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA GIQFR+LN +KGPAVR  R QAD++LYRL M+  +  QE L + Q 
Sbjct: 67  DALGGEMGKNIDATGIQFRILNTRKGPAVRASRAQADKQLYRLRMKHVMEQQERLSLKQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV G   E   +  +  +       +TV+LTTGTF+RG+IH+G    P GR GD PS  L
Sbjct: 127 EVTGIVVEDGEVRGVDTKVGVRYLGATVILTTGTFMRGLIHVGLTNYPGGRAGDLPSVGL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +   +  F  GRLKTGTPARLDG+TI + + E Q  D+  +PFSF T++I   Q+ C I
Sbjct: 187 SDQLRELGFAVGRLKTGTPARLDGRTIDFTRLEPQHGDDPPVPFSFSTERIDQPQVPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ FLEPEG +T
Sbjct: 247 AYTNPRSHEIIRSGLDRSPLYAGVIEGIGPRYCPSIEDKVVRFPEKDRHQTFLEPEGRDT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY++P +L  +LETK +  
Sbjct: 307 VEYYPSGLSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVDPIQLHASLETKLVRN 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A +    + +   R+++YIGVMIDDL + G  E
Sbjct: 367 LYHAGQINGTSGYEEAAGQGLMAGINAALRVRDKEPLILGRSEAYIGVMIDDLVTLGTRE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL   G  +G + E   +RF +  +      + LK   
Sbjct: 427 PYRMFTSRAEYRLLLREDNADLRLRERGHAVGLVPEGAYQRFLEKRERIGAELARLKGTK 486

Query: 483 LTSKN-----LSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           L         L++ S++  Q+  T   YE  L  PD + + L  I P A +   +V E++
Sbjct: 487 LLPSEADPDFLAAFSLTALQNALT---YEQLLRRPDITYEELCRIDPRAAEVPPVVREQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ + +  +  E   +P  FDY +LP LS E++EKL+  +P  L QAS
Sbjct: 544 EIQIKYQGYIERQLDQVERARKLEGTRVPAGFDYGALPGLSAEVREKLAKFRPDTLGQAS 603

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I+G+TPAA+ +L + +K
Sbjct: 604 RIQGVTPAAVGILSLALK 621


>gi|240950029|ref|ZP_04754337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus minor NM305]
 gi|240295507|gb|EER46250.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus minor NM305]
          Length = 630

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/619 (47%), Positives = 387/619 (62%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N++YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NKTYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q 
Sbjct: 64  DAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  +  L
Sbjct: 124 EVVDILVENNRAVGAVTKMGLTFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAATML 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
            +     +    RLKTGTP RLD +TI +D   KQ  DE L   SFM + +   RQI C 
Sbjct: 184 ADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVMSFMGSVEQHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL 
Sbjct: 244 ITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I 
Sbjct: 304 TIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+  +    D    +R  +Y GV++DDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWFPTRDLAYTGVLVDDLCTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ LK  
Sbjct: 424 EPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWARFNEKMENIEKEKARLKQT 483

Query: 482 V--LTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
              L   NL+  +        +  +  + +  P+ + + L  I P A         E+++
Sbjct: 484 WAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ QAS+
Sbjct: 544 ISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+ +KK 
Sbjct: 604 ISGITPAAISILLVNLKKQ 622


>gi|312964009|ref|ZP_07778480.1| glucose inhibited division protein A [Pseudomonas fluorescens WH6]
 gi|311282044|gb|EFQ60654.1| glucose inhibited division protein A [Pseudomonas fluorescens WH6]
          Length = 630

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/614 (47%), Positives = 388/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGVMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAVRETLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++++  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDVVKGVVTQMGLRFFAQSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM  K  + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQAGDTPIPVMSFMGSKEQHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNAHTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQIQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESITLEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ K        Y     LS P+     L  +     +    V E+++I++ 
Sbjct: 487 PGTEQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGSGAE-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTKLPMDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LL+I++KK
Sbjct: 606 TPAAISLLMIHLKK 619


>gi|315635268|ref|ZP_07890545.1| glucose inhibited division protein A [Aggregatibacter segnis ATCC
           33393]
 gi|315476014|gb|EFU66769.1| glucose inhibited division protein A [Aggregatibacter segnis ATCC
           33393]
          Length = 629

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/617 (47%), Positives = 394/617 (63%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E++  + +V +        +V+LT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 SDILVEQDRATGVVTKMGLKFHAKSVILTAGTFLAGKIHIGLENYEGGRAGDPASVTLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +    +Q  D  L  FSFM     + RQI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTIDFSVLAEQHGDAELPIFSFMGSVDQHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL T+
Sbjct: 246 HTNEKTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTTN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I GL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMKGLENARIIKPGYAIEYDYFDPRDLKPTLETKSIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAASQGLLAGINAGLYVQEKEVWFPRRDQAYMGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRSIWL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
             ++     +  +      +  +  + L  P+ + Q L ++ P     +    IE+++I 
Sbjct: 486 HPRSEYLEEANQVLGSPLVREASGEDLLRRPEINYQILTALTPFQPPMADKEAIEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQDEIEKQKRHENTAIPPNFDYSKVAGLSNEVRIKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++++L+ +KK 
Sbjct: 606 GITPAAISIILVNLKKQ 622


>gi|269140865|ref|YP_003297566.1| glucose-inhibited cell division protein A (tRNA uridine
           5-carboxymethylaminomethyl modification enzyme)
           [Edwardsiella tarda EIB202]
 gi|267986526|gb|ACY86355.1| glucose-inhibited cell division protein A (tRNA uridine
           5-carboxymethylaminomethyl modification enzyme)
           [Edwardsiella tarda EIB202]
 gi|304560623|gb|ADM43287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda FL6-60]
          Length = 629

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/621 (46%), Positives = 393/621 (63%), Gaps = 15/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI +    +Q  D     FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSVLAQQHGDNPAPVFSFLGDASQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL+++ 
Sbjct: 247 TNEHTHEVIRSNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLSSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMEGMQNTRIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +  +D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAADVDGWAPRRDEAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R  +F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDVRWAQFNQKLENMERERQRLRETWVH 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            +         L  T +S +  G+     + L  P+     L S+ P +   +     E+
Sbjct: 487 PQGEQAAEVNALLKTPLSREASGE-----DLLRRPEMDYATLTSLSPFSPPLADRQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++ +  E   +P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYQGYIARQQDEIEKQQRNENTRLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGITPAAISILLVWLKKQ 622


>gi|295095367|emb|CBK84457.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 629

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/616 (46%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LK+  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEVGRELGLVDDERWARFNEKLERIEQERQRLKTTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            +  ++  ++        +  +  + L  P+ + +NL  +   A         E+++I+ 
Sbjct: 487 PQAETAAEVNAHLTAPLSREASGEDLLRRPEVTYENLVKLTAFAPGLEDAEAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|74318826|ref|YP_316566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thiobacillus denitrificans ATCC 25259]
 gi|123745347|sp|Q3SF55|MNMG_THIDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|74058321|gb|AAZ98761.1| Glucose-inhibited division protein A subfamily [Thiobacillus
           denitrificans ATCC 25259]
          Length = 632

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 398/617 (64%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EAA  AA++GA T L+TH   T+G+MSCNP+IGG+GKGHLVRE+DA
Sbjct: 6   SFDVIVVGGGHAGTEAALAAARMGAKTLLLTHNIETLGAMSCNPSIGGIGKGHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR LN  KGPAVR  R QADR LY+ A+++ + +Q  L + Q  V
Sbjct: 66  LGGAMALATDEAGIQFRTLNSSKGPAVRATRAQADRVLYKAAIRQRLENQPGLTLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  Q   +     VVLT GTFL G++H+G     AGRMGD P+ SL  
Sbjct: 126 DDLVLDGARVVGVKTQLGILFEARAVVLTAGTFLAGLVHVGLENFQAGRMGDPPAVSLAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
              + D   GRLKTGTP R+DG+TI + +T+ Q  D+    FSFM D+ +   Q  C IT
Sbjct: 186 RLRELDLPVGRLKTGTPPRIDGRTIDYSRTQVQPGDDPAPVFSFMGDRSMHPAQRPCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T + TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL T 
Sbjct: 246 HTTVATHEIIRGGLDRSPLYAGVIEGVGPRYCPSIEDKITRFADKASHQIFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++QH  +R+IPGLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 306 EIYPNGISTSLPFDVQHAIVRSIPGLEHAHILRPGYAIEYDYYDPRNLKASLETKSIAGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R ++Y+GV++DDL ++GV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAALQTQGKDAWSPGRHEAYLGVLVDDLITRGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  +F +   E       LKS+ +
Sbjct: 426 YRMFTSRAEYRLQLREDNADMRLTETGRALGVVDDARWDQFNRKRDEVARETERLKSVWV 485

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIE 539
               L   ++T +  +   +  + ++ L  P+     + ++    A      V E+++I 
Sbjct: 486 NPAILPADAATQLIGQPIEREYSLFDLLRRPNLGYAQVLALPGGGAGVADVGVAEQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E  + + +E   +P D DY+ L  LS E++++L   +P  L QAS+++
Sbjct: 546 AKYQGYIDRQNEEVDKHREQEGLRLPPDLDYTRLTGLSMEVRQRLQTAQPETLGQASRLQ 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+Y K+ 
Sbjct: 606 GVTPAAISVLLVYAKRG 622


>gi|238783013|ref|ZP_04627040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia bercovieri ATCC 43970]
 gi|238716014|gb|EEQ07999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia bercovieri ATCC 43970]
          Length = 629

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 398/617 (64%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   + +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAITKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ +++
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDERWAHFSKKIEQIEKERQRLRDILV 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
              S+N+S  +   K    K     E L  P+   + L ++       +     ++++I+
Sbjct: 486 HPLSENVSEINELLKAPLSKEANGEELLRRPEIDYRLLMTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+++KK 
Sbjct: 606 GITPAAISILLVWLKKQ 622


>gi|256823852|ref|YP_003147815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Kangiella koreensis DSM 16069]
 gi|256797391|gb|ACV28047.1| glucose inhibited division protein A [Kangiella koreensis DSM
           16069]
          Length = 628

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 396/617 (64%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YSVIVIGGGHAGTEAALASARMGVKTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M +  D AGIQFR LN  KGPAVR  R QADR LYR A+ REIL +Q NL + Q  V
Sbjct: 67  GGAMAQAIDRAGIQFRTLNASKGPAVRATRAQADRGLYRSAI-REILENQPNLTIFQNAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +  Q        +VVLT GTFL G+IHIG      GR GD PS +L +
Sbjct: 126 VDLIVEQDKVQGVKTQMGLDFYAPSVVLTVGTFLGGLIHIGMQNHSGGRAGDPPSIALAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
              +  F   RLKTGTP R+D K++ +   E+Q  D  +  FSFM T     RQI C IT
Sbjct: 186 RLRELPFRVDRLKTGTPPRIDAKSVDFSVMEEQAGDNPVPTFSFMGTADQHPRQISCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +YSG I+  GPRYCPSIEDKI+RF ++N HQIF+EPEGLN++
Sbjct: 246 HTNDATHDIIRSGLDRSPMYSGVIEGVGPRYCPSIEDKIMRFSDKNSHQIFVEPEGLNSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQMDLVRSIKGFENAHITRPGYAIEYDYFDPRDLKASLETKFIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG+N+A +    +     R  +YIGV+IDDL ++G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLIAGMNAALQVQDKEAWSPRRDQAYIGVLIDDLITRGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F+   +      + +K+LV+
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGMVSDDRWSAFSDKKEAIERETARIKNLVV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPD--ARKFSSLVIERLQI 538
              + +   ++ + +     AY   E L  PD +   L ++ P    +   + V E+++I
Sbjct: 486 QPDSPAGQQLNQQLEKPLSRAYKGEELLRRPDVTYAGLMAL-PGMIEQPVPAKVAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y+ Y  RQ  E +     E  ++PKD DYS +  LSNE+ +KL  +KP  + QA ++
Sbjct: 545 QIKYSGYIDRQKDEIERSLRNENTVLPKDLDYSQVKGLSNEVVQKLMNIKPETIGQAGRV 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LLL+++KK
Sbjct: 605 SGVTPAAISLLLVHLKK 621


>gi|238787871|ref|ZP_04631668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia frederiksenii ATCC 33641]
 gi|238724214|gb|EEQ15857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia frederiksenii ATCC 33641]
          Length = 629

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/615 (48%), Positives = 398/615 (64%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDHVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNAEQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R + F+K I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDVRWEHFSKKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTLLPTDLDYSQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVWLKK 621


>gi|237729052|ref|ZP_04559533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter sp. 30_2]
 gi|226909674|gb|EEH95592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter sp. 30_2]
          Length = 629

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 395/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q +D  +  FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLGQQNSDNPMPVFSFLGDASQHPRQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR S + +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLSAEKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLERIEQERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  PD +   L S+   A     +   E+++I+ 
Sbjct: 487 PLAESAAEVNAHLATPLSREASGEDLLRRPDMTYAQLTSLSAFAPALDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ+ E +  +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQLEEIERQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|292490169|ref|YP_003533064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora CFBP1430]
 gi|292901171|ref|YP_003540540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Erwinia amylovora ATCC 49946]
 gi|291201019|emb|CBJ48158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Erwinia
           amylovora ATCC 49946]
 gi|291555611|emb|CBA24238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora CFBP1430]
          Length = 629

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/616 (48%), Positives = 389/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +T+ +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTVDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHQVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIELERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVAEVNSVISAALTKEASGEDLLRRPEMTYQQLMTLKHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  ++P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTVLPVDLDYQQVSGLSNEAIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|90023652|ref|YP_529479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Saccharophagus degradans 2-40]
 gi|123395363|sp|Q21DG2|MNMG_SACD2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89953252|gb|ABD83267.1| glucose inhibited division protein A [Saccharophagus degradans
           2-40]
          Length = 630

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 394/625 (63%), Gaps = 5/625 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA   AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   YDVIVIGGGHAGTEACLAAARMGCKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NLD+ Q    
Sbjct: 67  GGAMALATDKGGIQFRILNSRKGPAVRATRAQADRALYKAAVREILENQPNLDIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +  Q     +  TVVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLVVEGERVTGVTTQMGVTFKAPTVVLTAGTFLGGKIHIGMENHSGGRAGDPPSIALASR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +++ +D  EKQ+ +E+    S+M     +  Q  C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARSVNFDGLEKQWGEEKTPVMSYMGSLADHPEQTCCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH  I      S +++G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T  
Sbjct: 247 TNAQTHDFIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKDSHQIFIEPEGLKTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q  F+R+I G E  +I RPGYAIEYD+ +P++L  + ETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQMAFVRSIKGFENAHITRPGYAIEYDFFDPRDLKYSFETKHIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A K+   +  C  R ++YIGV+ DDL S G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAALKAQGKEAWCPRRDEAYIGVLADDLISMGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F K  +        +++  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADMRLTEKGRELGLVDDARWQAFCKKREAIELETQRMRTTWIQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  + +++ K   +    Y   + L  P+ +  +L S+  +A      V E+++I + 
Sbjct: 487 PNSAEANALAAKMPAELAREYSLLDLLKRPELTYDDLGSLKGEAVS-DPQVAEQVEINTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + + ++  E  +IP +FDY S+  LSNELK+KLS  +P  L +AS+I G+
Sbjct: 546 YAGYINRQTDDIERMRQHENTVIPVEFDYMSVEGLSNELKQKLSEARPETLSRASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTVKLNEIVLV 626
           TPAA++L+LIY+KK  +  N+  L 
Sbjct: 606 TPAAVSLILIYLKKRGLLKNKAALA 630


>gi|71065797|ref|YP_264524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter arcticus 273-4]
 gi|123648515|sp|Q4FSB8|MNMG_PSYA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71038782|gb|AAZ19090.1| putative glucose inhibited division protein A [Psychrobacter
           arcticus 273-4]
          Length = 632

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/620 (47%), Positives = 392/620 (63%), Gaps = 9/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KNYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E    +++V     +    TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 125 ADDILVENGRATAVVTATGIIFNTQTVVLTSGTFLGGVIHIGLESSKGGRAGDQPSIKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +++ +     Q  D  L   S+M D  +   Q+ C I
Sbjct: 185 DRLRELKLPVGRLKTGTPARIDARSVDFSVMAVQPGDTPLPVMSYMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 245 THTNARTHDIIRENLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDR 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSAR---KSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG N+A    ++++ D     R ++Y+GV++DDL + G
Sbjct: 365 LYFAGQINGTTGYEEAGVQGLLAGTNAALVTCENSEFDVWTPRRDEAYLGVLVDDLITHG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++      S LK
Sbjct: 425 TTEPYRMFTSRAEYRLLLREDNADQRLTETGRKLGLVDDVRWQAYEEKMEAIASETSRLK 484

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +  T  N     ++ +      K  TAY+ L  P     ++ +I     +  S V E++
Sbjct: 485 DIWATPINALGAQVTAQTGEVLSKESTAYDLLKRPQIHFNDIAAIT--GSEVDSQVGEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDYS +  LSNE+ +KL+ ++P  L QA 
Sbjct: 543 EISVKYAGYIDRQQEDIDQMKRLENTALPMDFDYSVVSGLSNEIVQKLAQVRPSTLAQAG 602

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL + +KK 
Sbjct: 603 RISGVTPAAIQLLAMTVKKQ 622


>gi|329298811|ref|ZP_08256147.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Plautia stali symbiont]
          Length = 628

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/615 (48%), Positives = 390/615 (63%), Gaps = 4/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRIVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                    RLKTGTP R+D +TI +     Q  D+ +  FSFM     + +Q+ C IT 
Sbjct: 187 LRALPLRVNRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFMGYAGQHPQQVPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNELTHEVIHNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLQAGLNAARQSADKEGWAARRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L+ L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARYNQKLEAIEQERQRLRDLWVH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESS 541
             S+N+S  +       K  +A + L  P+ + + L  +       +     E+++I+  
Sbjct: 487 PKSENVSEVNTVISALTKEASAEDLLRRPEMTYELLMLLPSYGPALADEQAAEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E    +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G+
Sbjct: 547 YEGYIARQQEEIDRQQRNENTLLPADLDYRQVNGLSNEVIAKLNDHKPTSIGQASRISGI 606

Query: 602 TPAALNLLLIYIKKN 616
           TPAA+++LLIY+KK 
Sbjct: 607 TPAAISILLIYLKKQ 621


>gi|322835093|ref|YP_004215120.1| glucose inhibited division protein A [Rahnella sp. Y9602]
 gi|321170294|gb|ADW75993.1| glucose inhibited division protein A [Rahnella sp. Y9602]
          Length = 629

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 395/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD P+ SL   
Sbjct: 127 DLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D     FSFM +   + RQI C +T 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPAPVFSFMGNVSQHPRQIPCYMTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 VYPNGISTSLPFDVQMQIVRSMQGMENAVIVRPGYAIEYDFFDPRDLKPTLESKFIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +++ +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGMNAARSASEEEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFNEKLEMIEQERQRLRGIWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
             +     I+        K  +A E L  P+ + + +  + P A     +   E+++I+ 
Sbjct: 487 PHHAQVEEINAHLSAPLSKEASAEELLRRPEMTYELITRLSPFAPSVPDVQAAEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQQRNENTVLPVDLDYRQVNGLSNEVIAKLNDHKPTSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLI++KK 
Sbjct: 607 ITPAAISILLIWLKKQ 622


>gi|321474459|gb|EFX85424.1| hypothetical protein DAPPUDRAFT_45739 [Daphnia pulex]
          Length = 671

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 306/633 (48%), Positives = 406/633 (64%), Gaps = 28/633 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EA A AA++G  T L+THK  TIG MSCNP+ GG+GKGHL+RE+D
Sbjct: 37  KNYDVIVVGGGHAGTEACAAAARMGCKTLLLTHKIETIGEMSCNPSFGGIGKGHLMREVD 96

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR+ D +GIQ++VLN +KGPAV GPR Q DR LY+  +Q E+    NL++    
Sbjct: 97  ALDGVCGRICDLSGIQYKVLNRRKGPAVWGPRAQIDRNLYKKHLQAELFETPNLEIRAAA 156

Query: 124 VAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V     E          +++ D++ I   +VV+TTGTFLRG I+IG    PAGRMGD P+
Sbjct: 157 VEDLIVENIDGHETCLGVLLADDTKISSRSVVITTGTFLRGQINIGLETYPAGRMGDKPA 216

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
             L ++  +  F  GRLKTGTP RLDG+TI +   E Q  D+  IPFSFM D++    N 
Sbjct: 217 IGLSHTLERLQFKLGRLKTGTPPRLDGRTIDYSVCEIQRGDDPPIPFSFMNDRVWIEPND 276

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C ITRT+    RII++N+        + +  GPRYCPSIE K++RFG R  HQ++LE
Sbjct: 277 QVNCHITRTSPAMERIILDNLHLDRHVQEETR--GPRYCPSIESKMLRFGGRR-HQVWLE 333

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PE L+  VVYPNG+S  LP E+Q Q +RTIPGLEKV +IRPGY +EYDYI+P+++  TLE
Sbjct: 334 PESLDNHVVYPNGLSCTLPAELQFQMLRTIPGLEKVEMIRPGYGVEYDYIDPRQIRKTLE 393

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK ++GLF AGQINGTTGYEEAAAQG++AG+N+  K   +      RT+ YIGV+IDDLT
Sbjct: 394 TKPVNGLFFAGQINGTTGYEEAAAQGIIAGLNAGLKVKNMPSFTIDRTEGYIGVLIDDLT 453

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN---- 472
             G  EPYRMFTSRAE+R+SLRPDNAD RLT      GC+ + R  R       +N    
Sbjct: 454 RIGAPEPYRMFTSRAEFRLSLRPDNADFRLTEKAFPTGCVSQARYDRCVNTRLTHNDAVT 513

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP----DFSIQNLFSICPDARKF 528
            L+S+ + L +  K L   S+   +    R A+E L+ P      ++  L SI  D R  
Sbjct: 514 LLKSIKRPLSVWRKML---SLPATKTATHRNAFELLALPWQQDGITVALLDSILADGR-L 569

Query: 529 SSLV-----IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKE 582
           S LV      +RLQIES Y+     Q  +  +I+ EE   IP D DY  S  +LSNE + 
Sbjct: 570 SHLVSDPLLCQRLQIESLYSNAIDDQEGDVVQIRAEEALAIPDDIDYLESSMSLSNEERN 629

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           KL+  +P  +  AS+I G+TP+A+  +L Y+ +
Sbjct: 630 KLNEARPQTIGAASRISGVTPSAILTILQYLNR 662


>gi|296105465|ref|YP_003615611.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059924|gb|ADF64662.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 629

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/616 (46%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LK+  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIEQERQRLKTTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            +  ++  ++        +  +  + L  P+ + +NL  +   A         E+++I+ 
Sbjct: 487 PQAETAAEVNAHLTAPLSREASGEDLLRRPEVTYENLVKLTAFAPGLEDAEAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|319944931|ref|ZP_08019193.1| glucose inhibited division protein A [Lautropia mirabilis ATCC
           51599]
 gi|319741501|gb|EFV93926.1| glucose inhibited division protein A [Lautropia mirabilis ATCC
           51599]
          Length = 680

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/643 (45%), Positives = 409/643 (63%), Gaps = 36/643 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EA+ VAA+ GA T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 8   FDVIVVGGGHAGTEASLVAARTGAKTLLLSHNLDTLGQMSCNPSIGGIGKGHLVKEVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D AGIQFR+LN  KGPAVR  R QADR LYR A+++ + +Q N+ + Q  V 
Sbjct: 68  GGVMAVATDHAGIQFRILNASKGPAVRATRAQADRVLYRQAIRQALENQPNMTLFQQAVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q     R   VVLT GTFL G +H+G     AGR  D  + +L   
Sbjct: 128 DLLLEGDRVVGVITQLGIQFRAKAVVLTAGTFLNGKVHVGLDNYEAGRAADPSAKTLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM--TDKITNRQIECGI 242
             +     GRLKTGTP R+DGKTI + +   Q  D   +P FSF+   D+   RQ+ C I
Sbjct: 188 LRELALPQGRLKTGTPPRIDGKTIDYSRLGIQPGDLDPVPVFSFIGCADQ-HPRQLPCWI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II + +  S +++G I+  GPRYCPSIEDKI RF +++ HQI+LEPEGL T
Sbjct: 247 THTNARTHEIIRQALDRSPLFTGVIEGVGPRYCPSIEDKIHRFADKDSHQIYLEPEGLQT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP + Q   + ++ GLEK +I+RPGYAIEYDY +P+ L P LET++I G
Sbjct: 307 HEIYPNGISTSLPFDTQLAVVHSMVGLEKAHILRPGYAIEYDYFDPRGLKPGLETRQIQG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR+    +     R  +Y+GVM+DDL ++GV E
Sbjct: 367 LFFAGQINGTTGYEEAAAQGLLAGLNAARQVQGKEPWVPRRDQAYMGVMLDDLLTQGVQE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL 478
           PYRMFTSRAEYR+SLR DNAD RLT +G ++GC+ + R + F    +    E   +R+ L
Sbjct: 427 PYRMFTSRAEYRLSLREDNADLRLTELGRQMGCVDDVRWQAFTSKQEAIEREIAHMRATL 486

Query: 479 KSLVLTSKNLSSTSIS--------------------FKQDGKTRTA-YEFLSYPDFSIQN 517
            +  + ++  +    +                      Q+G ++ + ++ L  PD S+  
Sbjct: 487 ANPQVLARLQTPQGTTQAAEEAQGASPSAPQAPAAPQGQNGTSKHSLHDLLKRPDVSLAQ 546

Query: 518 LFSICPDARKFSSL-----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
           L S+ P+  +F+ +     V E+++I+  Y  Y  RQ +E + +  +E   IP D DY+ 
Sbjct: 547 LASLMPE--EFAEVQADPRVAEQVEIQIKYQGYIDRQKLEVQRMAQQEATPIPADLDYTQ 604

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  LSNE+++KL   +P  + QA +I GMTPAA++LLL+++KK
Sbjct: 605 ISGLSNEVRQKLIAQRPQTIGQAGRIPGMTPAAVSLLLVHLKK 647


>gi|293391117|ref|ZP_06635451.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951651|gb|EFE01770.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/623 (47%), Positives = 390/623 (62%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA    ++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   TYDVIVIGGGHAGSEAALAPVRMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++  + +V +         V+LT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRATGVVTKMGLKFHAKAVILTAGTFLAGKIHIGLENYTGGRAGDPASVTLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTINFDVLAKQHGDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEVWFPRRDQAYVGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  KLG I E R  RF + I+     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHKLGLIDEARWARFNQKIENIELERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +     + L  P+ + + L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REANGEDLLRRPEMNYEILTSLTPYQPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP  FDY  +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQEEEIEKQKRHENTEIPTQFDYVKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|283787570|ref|YP_003367435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Citrobacter
           rodentium ICC168]
 gi|282951024|emb|CBG90702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Citrobacter
           rodentium ICC168]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWIT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
               ++  ++        +  +  + L  P+ +   L ++ P       +   E+++I+ 
Sbjct: 487 PTAETAVEVNAHLTAPLSREASGEDLLRRPEMTYAQLTALSPFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|206890699|ref|YP_002248428.1| glucose-inhibited division protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|254811520|sp|B5YJL3|MNMG_THEYD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|206742637|gb|ACI21694.1| glucose-inhibited division protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 624

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/624 (48%), Positives = 397/624 (63%), Gaps = 11/624 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +D+IV+G GHAGCEAA   AK+G  TAL T    TI  +SCNPAIGGL KGHLVREI
Sbjct: 4   EKDFDIIVVGAGHAGCEAALATAKMGLQTALFTIYLETIAQLSCNPAIGGLAKGHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M +V D AGIQFR+LN  KGPAV   R QADR LY + M++ + S ENL + Q 
Sbjct: 64  DALGGIMAKVTDMAGIQFRMLNRSKGPAVWSLRAQADRILYNIYMRKILESTENLAIKQA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  I+           V++T GTFL G+IHIG     AGR G+ PS  L
Sbjct: 124 MVEEIVVENGKVKGIITSLGVFYGAKAVIITPGTFLNGLIHIGLDSFEAGRAGEFPSKKL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  K     GRLKTGTP R+D KTI + KTE+Q  D+  IPFS+ T KI N Q+ C I
Sbjct: 184 SESIKKLGLKMGRLKTGTPPRIDAKTIDFSKTEEQGGDDPPIPFSYSTKKINNPQVPCYI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II+ N+  S +YSG IK  GPRYCPSIEDK+V+F +++ HQIFLEPEGL+ 
Sbjct: 244 TYTNEKTHEIILNNLDRSPLYSGKIKGIGPRYCPSIEDKVVKFRDKSRHQIFLEPEGLSR 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NGI T+LP ++Q  F+RTIPGLE   I+RPGYAIEYD++ P ++  TLE K I G
Sbjct: 304 KEYYANGIPTSLPYDVQVAFVRTIPGLEDAEIMRPGYAIEYDFVYPTQIRHTLEVKGIEG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL+AGIN+A K  K   +   R ++YIGV+IDDL +KG  E
Sbjct: 364 LYLAGQINGTSGYEEAAAQGLMAGINAALKIKKQPPLILGRDEAYIGVLIDDLVTKGTQE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL   G K+G + E   + F K   +   L+  +K L 
Sbjct: 424 PYRMFTSRAEFRLLLRHDNADLRLRDYGYKIGLVDEETYEEFNK---KKELLQREIKRLK 480

Query: 483 LT----SKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            T    S+ L+   I  +        +  + L  P+ +   +    P     +  + E +
Sbjct: 481 TTTIKPSEELNKALIEAQTTPVEEATFLDKLLKRPELNYDFIKKFAPSEVTLTKELEELV 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +QM   + +K  E++LIP++FD+ ++P LS E+ +KL+ + P  + QA 
Sbjct: 541 EIHIKYEGYIAKQMELVERMKQFEEKLIPENFDF-NIPGLSREVIQKLTEVAPRTIGQAM 599

Query: 597 KIEGMTPAALNLLLIYI-KKNTVK 619
           +I G+TPAA+++L++ + KK TVK
Sbjct: 600 RIPGVTPAAISILMVAVQKKTTVK 623


>gi|146313753|ref|YP_001178827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacter sp. 638]
 gi|166989737|sp|A4WGE6|MNMG_ENT38 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145320629|gb|ABP62776.1| glucose inhibited division protein A [Enterobacter sp. 638]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 395/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSISLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDTPIPVFSFMGNAAQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLSTMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIETERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
               S   ++        +  +  + L  P  + + L  + P A         E+++I+ 
Sbjct: 487 PLADSVAEVNAHLAAPLSREASGEDLLRRPGMTYEQLVQMTPFAPGLDDAEAAEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|271502656|ref|YP_003335682.1| glucose inhibited division protein A [Dickeya dadantii Ech586]
 gi|270346211|gb|ACZ78976.1| glucose inhibited division protein A [Dickeya dadantii Ech586]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 394/620 (63%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENDQVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIALSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFLGNASEHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMQNARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   D     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQDGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGMVDDERWARFNEKLENIEKERQRLRDILVH 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
                      L  + +S + +G+       + Y   +   +F+   PD +       E+
Sbjct: 487 PNTEGVEQINRLLKSPLSREANGEDLLRRPEMDYAQLTALPMFAPALPDVQ-----ATEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPGSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVWLKK 621


>gi|238797882|ref|ZP_04641374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia mollaretii ATCC 43969]
 gi|238718298|gb|EEQ10122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia mollaretii ATCC 43969]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/616 (48%), Positives = 397/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSQLVPQLGDTPIPVFSFLGNAEQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSKKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTLLPVDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|261867021|ref|YP_003254943.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412353|gb|ACX81724.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 629

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/623 (47%), Positives = 391/623 (62%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G +SCNPAIGG+GKGHLV+EIDA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQISCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R Q DR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMATAADKAGIQFRTLNSSKGPAVRATRAQTDRVLYRQAVRIALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++  + +V +         V+LT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 TDILIEQDRATGVVTKMGLKFHAKAVILTAGTFLAGKIHIGLENYTGGRAGDPASVTLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + +QI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTINFDVLAKQHGDAVLPVFSFMGSVSDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWFPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIELERQRLRSIWL 485

Query: 484 ---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
                     +K L S  +      +     + L  P+ + + L S+ P          +
Sbjct: 486 HPRSEYLEEANKVLGSPLV------REANGEDLLRRPEMNYEILTSLTPYQPAMEDKEAV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E ++ K  E   IP  FDY+ +  LSNE++ KL   +P ++ 
Sbjct: 540 EQVEIAIKYQGYIEHQEEEIEKQKRHENTAIPAQFDYAKVSGLSNEVRAKLEQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++++L+ +KK 
Sbjct: 600 QASRISGITPAAISIILVNLKKQ 622


>gi|183222816|ref|YP_001840812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189909571|ref|YP_001961126.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|205831527|sp|B0S904|MNMG_LEPBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831528|sp|B0SS01|MNMG_LEPBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167774247|gb|ABZ92548.1| Glucose inhibited division protein A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781238|gb|ABZ99536.1| Glucose-inhibited division protein A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 624

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/617 (48%), Positives = 403/617 (65%), Gaps = 15/617 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+G GHAG EAA ++AK G  T LIT    TIG MSCNPAIGG+ KGH+VRE+DAL
Sbjct: 10  FDCIVVGAGHAGTEAAYISAKAGLKTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGRV D  GIQF++LN  KGP+V  PR QA+++ Y+L ++ ++   + L + Q  V 
Sbjct: 70  GGLMGRVIDQTGIQFKMLNTSKGPSVWAPRAQAEKKQYQLMIKHQLEKLQQLSIRQDTVE 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ ++         + V+LTTGTFL  VIHIG  +  +GR+G+  +  L ++
Sbjct: 130 DLIVEGNQVTGVITGRGFTFYTNHVILTTGTFLSSVIHIGTYQKESGRIGEPTTKGLSHT 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F+   GRLKTGTPAR+   +I +D  E Q  DE   PFSF T KI  +QI C IT T
Sbjct: 190 LARFELRLGRLKTGTPARVHKNSINFDGLEIQDGDENPRPFSFSTKKIDRKQIPCFITYT 249

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH +I +N+++S +YSG IKS GPRYCPSIEDK+VRF ER+ HQIF+EPEG  T+ +
Sbjct: 250 NDTTHELIKQNLEYSPMYSGQIKSVGPRYCPSIEDKVVRFAERDRHQIFIEPEGYETNEM 309

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LPEE+Q +F+R+I GLE+V ++RPGYAIEYDY++P EL PTLETKK+ GL+ 
Sbjct: 310 YLNGVSTSLPEEVQWKFLRSIKGLEQVELMRPGYAIEYDYVDPTELHPTLETKKVKGLYH 369

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVA  N  R   K + I F R++SYIGV++DDL  KGV +PYR
Sbjct: 370 AGQINGTTGYEEAAAQGLVAAYNVIRSVRKEEPILFKRSESYIGVLVDDLVYKGVEDPYR 429

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK----RFAKY--IQEYNFLRSLLK 479
           MFTSRAEYR+ LR DNAD RL   G ++G + E   K    R+A+   I+ + F+ ++  
Sbjct: 430 MFTSRAEYRLLLRQDNADQRLMQYGYEMGLVEESLYKDMKDRYARIESIKSHLFVSAMKP 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           S  LT K L    I+  + G + ++  FL   D  I++L  I  +    +      L++E
Sbjct: 490 SPELT-KVLEEKQITNYKFGHSLSS--FLKRSDIKIKDLEPIVSELSILNEDEKAVLEME 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             Y  Y  R++   + I++ +K L   IP DFDY+S+  L  E   KL   +P NL  A 
Sbjct: 547 VKYEGYLKREL---ETIEYRKKFLNFQIPIDFDYASVKGLKTEAIVKLEKHRPLNLENAL 603

Query: 597 KIEGMTPAALNLLLIYI 613
            I G+ P+ ++LLL ++
Sbjct: 604 HISGVDPSDVDLLLYHL 620


>gi|301019838|ref|ZP_07183978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
 gi|299882052|gb|EFI90263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
          Length = 617

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/611 (47%), Positives = 394/611 (64%), Gaps = 5/611 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLI 611
           +TPAA+++LL+
Sbjct: 607 VTPAAISILLV 617


>gi|33151283|ref|NP_872636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus ducreyi 35000HP]
 gi|71152072|sp|Q7VPP9|MNMG_HAEDU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33147503|gb|AAP95025.1| glucose inhibited division protein A [Haemophilus ducreyi 35000HP]
          Length = 630

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/619 (48%), Positives = 396/619 (63%), Gaps = 13/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR +++  + +Q+NL + Q EV 
Sbjct: 67  GGLMAIATDHAGIQFRTLNSSKGPAVRATRAQADRVLYRQSVRTALENQQNLAIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  S +V +     +  TV+LT GTFL G IHIG      GR GD  +  L   
Sbjct: 127 DILVENHRASGVVTKMGLTFKAKTVILTAGTFLAGKIHIGLDNYAGGRAGDPAATRLAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
               +    RLKTGTP RLD +TI ++   KQ  DE L   SFM +   + RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFEVLAKQPGDEVLPVMSFMGEVGQHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +Y+G I+  GPRYCPSIEDK++RFG+RNGHQI+LEPEGL T  
Sbjct: 247 TNHQTHDIIRANLDRSPMYTGIIEGIGPRYCPSIEDKVMRFGDRNGHQIYLEPEGLTTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLE   II+ GYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMAIVNSMKGLENTRIIKAGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +         +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQAKPSWFPTRDVAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I E R +RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHQLGLIDEARWQRFNQKMENIERERERLKQIWIH 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            ++        L ++ ++ + +G+       ++Y   +    F+   D R+ +    E++
Sbjct: 487 PQSAYVDAVNQLVNSPLTREVNGEDLLRRPEINYAKLTEIAAFAPALDDRQAA----EQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E +  K  E  LIP +FDY+ + +LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQYNEIERHKRHENTLIPAEFDYNKVDSLSNEVRAKLMQHRPISIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+++LL+ +KK
Sbjct: 603 RISGITPAAISILLVNLKK 621


>gi|330876347|gb|EGH10496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 630

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 389/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAKATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 487 PGTEQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCTD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|311696581|gb|ADP99454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine bacterium HP15]
          Length = 628

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/614 (47%), Positives = 400/614 (65%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + SQ NL + Q    
Sbjct: 67  GGAMAEATDKAGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRHTLESQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVTGVVTQTGIRFNARTVVLTTGTFLGGVIHIGMQHHAGGRAGDAPANALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SF+  +  +  Q+ C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARSVDFSVMQEQWGDDPTPVMSFIGSRSQHPEQVCCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II      S +++G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEQTHDIIRSGFDRSPMFAGSIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R+IPG E  +I RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLAAVRSIPGFENAHITRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN+A +S + D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINAALRSQEKDEWYPRRDEAYLGVLVDDLITMGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VL 483
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F    +     RS L++  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVNDERWQKFNDKREAIATERSRLEATRIH 486

Query: 484 TSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +      +  F +   TR  +  E L  P+    ++  I  + +    +V ++++IE  
Sbjct: 487 PNTEAGERANGFLKQPMTRDQSLAELLRRPEIVYSHIAEIGAE-KAEDPVVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQTDEIERLRKNENTALPVDLDYDVIGGLSNEIKQKLKTVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ +L+++KK
Sbjct: 606 TPAAVSQILVHLKK 619


>gi|238795163|ref|ZP_04638752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia intermedia ATCC 29909]
 gi|238725521|gb|EEQ17086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia intermedia ATCC 29909]
          Length = 629

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 395/615 (64%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLQNYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSKKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+   +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVDEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTLLPTDLDYHQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVWLKK 621


>gi|229593492|ref|YP_002875611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens SBW25]
 gi|229365358|emb|CAY53744.1| glucose inhibited division protein A [Pseudomonas fluorescens
           SBW25]
          Length = 631

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/614 (47%), Positives = 388/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGVMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAVRETLENQPNLWIFQQAAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRFLAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAKR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM  K  + +Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQAGDTPIPVMSFMGSKEQHPKQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQIQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F K  +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWEAFCKKRESITLEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ K        Y     LS P+     L  +     +    V E+++I++ 
Sbjct: 488 PGTEQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTKLPTDIDYTGISGLSKEIQSKLGITRPQTLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LL+I++KK
Sbjct: 607 TPAAISLLMIHLKK 620


>gi|161616997|ref|YP_001590962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|189039355|sp|A9MXB8|MNMG_SALPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161366361|gb|ABX70129.1| hypothetical protein SPAB_04818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 629

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDSVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|238750333|ref|ZP_04611835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia rohdei ATCC 43380]
 gi|238711566|gb|EEQ03782.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia rohdei ATCC 43380]
          Length = 629

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/616 (48%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDKAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDKVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+S  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVSEINGLLKAPLSKEANGEELLRRPEIDYRLLTALPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTALPADLDYRQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|302608314|emb|CBW44763.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Marinobacter
           hydrocarbonoclasticus]
          Length = 628

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/614 (47%), Positives = 403/614 (65%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMARATDQAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRHMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVVGVVTQTGIRFNAKTVVLTTGTFLGGVIHIGMQNHAGGRAGDAPANALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F+ GRLKTGTP R+D +T+ +   ++Q+ D+     SF+  +  +  QI C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARTVDFSAMQQQWGDDPTPVMSFIGSRDEHPEQICCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEETHDIIRSGFDRSPMFAGNIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +R+IPG E  +I+RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLKAVRSIPGFENAHILRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++   +     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASLRAQDKEEWYPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F++  +     RS L+S  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVDDERWQKFSEKCEGIAKERSRLESTRIH 486

Query: 485 SKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +    +   KQ   + ++  E L  P+    ++  I  + R     V ++++IE  
Sbjct: 487 PNTEAGERANGYLKQPMTRDQSLAELLRRPEIVYDHIAEIGAE-RAEDPNVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQADEIERLRKNENTALPLDLDYDVIGGLSNEIKQKLKDVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ +L+++KK
Sbjct: 606 TPAAVSQILVHLKK 619


>gi|109900604|ref|YP_663859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas atlantica T6c]
 gi|123063991|sp|Q15MT3|MNMG_PSEA6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109702885|gb|ABG42805.1| glucose inhibited division protein A [Pseudoalteromonas atlantica
           T6c]
          Length = 633

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/619 (47%), Positives = 396/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   QQQFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNVETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D  GIQFR LN  KGPAVR  R QADR LYR A++  +  Q+NL + Q 
Sbjct: 64  DALGGSMAKAIDKGGIQFRTLNSSKGPAVRATRAQADRSLYRSAIRDIVEHQDNLTLFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E + ++ +V Q     R  +VV+T GTFL G IHIG      GR GD PS +L
Sbjct: 124 SCDDLIVENDQVTGVVTQMGLKFRAKSVVITVGTFLGGTIHIGMENYKGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +      F   RLKTGTPARLD +T+ +   ++Q  D     FSFM  +  + RQI C 
Sbjct: 184 ADRLRALPFRVSRLKTGTPARLDARTLDYSVMQEQLGDSPTPVFSFMGKREDHPRQIACY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLN
Sbjct: 244 ITHTNSKTHDIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  VYPNGIST+LP ++Q + +R+I G E  +IIRPGYAIEYD+ +P++L  TLETK I 
Sbjct: 304 SIEVYPNGISTSLPFDVQFELVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQTLETKFIK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AG N++ +    D +   R ++Y+GV+IDDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAGAQGLIAGANASLQCQGKDPLILRRDEAYMGVLIDDLATMGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + E R + F   ++     R  L+  
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADIRLTAKGHELGLVDEERWQAFNIKLEAIELERQRLRDT 483

Query: 482 VLTSKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +  K+ ++ +++   K    K  T  + +  P+ + + L ++       +     E+++
Sbjct: 484 WVHPKHAAAEALNPLLKNALSKENTLEDLIRRPEMTYETLMNVTEFGPGITDPKAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E  + +  E  LIP DFDYS +  LSNE+  KLS  KP  L  AS+
Sbjct: 544 IQIKYAGYIERQQDEIAKSRKNENTLIPLDFDYSQISGLSNEVVAKLSDAKPETLGLASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+Y+KK+
Sbjct: 604 ISGITPAAISLLLVYLKKH 622


>gi|288942767|ref|YP_003445007.1| glucose inhibited division protein A [Allochromatium vinosum DSM
           180]
 gi|288898139|gb|ADC63975.1| glucose inhibited division protein A [Allochromatium vinosum DSM
           180]
          Length = 628

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 400/618 (64%), Gaps = 5/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  AA+ G  T L+T    T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   TYDVIVVGGGHAGTEAALAAARCGVRTLLLTQNIETLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM R AD AGIQFR+LN  KGPAVR  R QADR+LYR A++  + +Q  L + Q  V
Sbjct: 66  LGGLMARAADRAGIQFRILNASKGPAVRATRAQADRQLYRAAVRTALENQPGLAIFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +  Q     R   VVLT GTFL G IH+G      GR GD PSN L  
Sbjct: 126 EDLLVEGERVAGVRTQMGLEFRARAVVLTVGTFLGGRIHVGLSNYEGGRAGDPPSNGLAR 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D ++I + +  +Q  D+ +  FSF+     + RQ+ C IT
Sbjct: 186 RLRELPFRIERLKTGTPPRIDARSIDYSRLAEQPGDDPVPVFSFLGRPEDHPRQVSCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+  TH II   +  S +++G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEGL T 
Sbjct: 246 HTSERTHDIIRSGLSRSPLFTGVIEGVGPRYCPSIEDKIVRFADKSSHQIFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP +IQ   +R+I GLE+ ++ RPGYAIEYD+++P++L P+LET+ +SGL
Sbjct: 306 EVYPNGISTSLPYDIQEALVRSIVGLERAHLTRPGYAIEYDFLDPRDLKPSLETRPLSGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEA AQGL+AG N+A +    +     R +SY+GVM+DDL ++G  EP
Sbjct: 366 FLAGQINGTTGYEEAGAQGLLAGANAALQVQGREPWHPRRDESYLGVMVDDLITRGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG +LG +G+ +   F    +     R  L+   +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEIGRRLGLVGDEQWCAFEHKREAIERERQRLRDTWV 485

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
             + L    +T +  +   +   A + L+ P+     + ++  +   + +  V E+L+I+
Sbjct: 486 RPETLDPTLATQVLGEPLRRESRALDLLARPNVGYAGIRALTGEPPEQVAPEVAEQLEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E +  + +E + +P  FDY+ +  LS E++EKL  ++P  + QA++I 
Sbjct: 546 TRYAGYIDRQRAEIERQREQELKPLPDSFDYAQVRGLSVEVREKLMRVRPATIGQAARIP 605

Query: 600 GMTPAALNLLLIYIKKNT 617
           G+TPAA++LLLI++K+  
Sbjct: 606 GVTPAAVSLLLIHLKRQA 623


>gi|120556790|ref|YP_961141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter aquaeolei VT8]
 gi|166222941|sp|A1U7I5|MNMG_MARAV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120326639|gb|ABM20954.1| glucose inhibited division protein A [Marinobacter aquaeolei VT8]
          Length = 628

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/614 (47%), Positives = 403/614 (65%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMARATDQAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRHMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVVGVVTQTGIRFNAKTVVLTTGTFLGGVIHIGMQNHAGGRAGDAPANALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F+ GRLKTGTP R+D +T+ +   ++Q+ D+     SF+  +  +  QI C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARTVDFSAMQQQWGDDPTPVMSFIGSRDEHPEQICCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEETHDIIRSGFDRSPMFAGNIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +R+IPG E  +I+RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLKAVRSIPGFENAHILRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++   +     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASLRARDQEEWYPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F++  +     RS L+S  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVDDERWQKFSEKCEGIAKERSRLESTRIH 486

Query: 485 SKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +    +   KQ   + ++  E L  P+    ++  I  + R     V ++++IE  
Sbjct: 487 PNTEAGERANGYLKQPMTRDQSLAELLRRPEIVYDHIAEIGAE-RAEDPNVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQADEIERLRKNENTALPLDLDYDVIGGLSNEIKQKLKDVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ +L+++KK
Sbjct: 606 TPAAVSQILVHLKK 619


>gi|168239645|ref|ZP_02664703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737365|ref|YP_002116817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|238690703|sp|B4TN42|MNMG_SALSV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|194712867|gb|ACF92088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287686|gb|EDY27077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 629

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNTHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|198242041|ref|YP_002217822.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205354543|ref|YP_002228344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859097|ref|YP_002245748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|238690338|sp|B5FN44|MNMG_SALDC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690396|sp|B5QVE1|MNMG_SALEP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690535|sp|B5RFV4|MNMG_SALG2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|197936557|gb|ACH73890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205274324|emb|CAR39348.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710900|emb|CAR35264.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326625609|gb|EGE31954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|326629678|gb|EGE36021.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLESIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|16767158|ref|NP_462773.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167994881|ref|ZP_02575971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234385|ref|ZP_02659443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168245184|ref|ZP_02670116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168263227|ref|ZP_02685200.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168464788|ref|ZP_02698680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168823141|ref|ZP_02835141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194445542|ref|YP_002043122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194450875|ref|YP_002047905.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194470389|ref|ZP_03076373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197250701|ref|YP_002148811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197265255|ref|ZP_03165329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200388594|ref|ZP_03215206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928647|ref|ZP_03219846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238913127|ref|ZP_04656964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|21263669|sp|Q8ZKW6|MNMG_SALTY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690004|sp|B5EZ07|MNMG_SALA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690240|sp|B4TAY3|MNMG_SALHS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238693556|sp|B4SYE2|MNMG_SALNS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16422448|gb|AAL22732.1| associated with glucose-inhibited division [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194404205|gb|ACF64427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409179|gb|ACF69398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194456753|gb|EDX45592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195632101|gb|EDX50585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197214404|gb|ACH51801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197243510|gb|EDY26130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199605692|gb|EDZ04237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322080|gb|EDZ07278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205327320|gb|EDZ14084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205331678|gb|EDZ18442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336051|gb|EDZ22815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205340555|gb|EDZ27319.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205348292|gb|EDZ34923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261249013|emb|CBG26871.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996162|gb|ACY91047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301160406|emb|CBW19932.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915005|dbj|BAJ38979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320088299|emb|CBY98060.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           Glucose-inhibited division protein A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222172|gb|EFX47245.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322617213|gb|EFY14118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619099|gb|EFY15985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322625166|gb|EFY21994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630217|gb|EFY26988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634358|gb|EFY31092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322635242|gb|EFY31957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642881|gb|EFY39466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645085|gb|EFY41615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650434|gb|EFY46846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653626|gb|EFY49953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661546|gb|EFY57769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322661628|gb|EFY57847.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669790|gb|EFY65932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671983|gb|EFY68102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675006|gb|EFY71092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683696|gb|EFY79709.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686083|gb|EFY82068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323132236|gb|ADX19666.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192000|gb|EFZ77237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200494|gb|EFZ85572.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202723|gb|EFZ87760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208300|gb|EFZ93241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211735|gb|EFZ96568.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218597|gb|EGA03304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219998|gb|EGA04468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224769|gb|EGA09034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232523|gb|EGA16625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235298|gb|EGA19383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241086|gb|EGA25123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241365|gb|EGA25397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248595|gb|EGA32525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252106|gb|EGA35966.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323258590|gb|EGA42253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262378|gb|EGA45936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323268215|gb|EGA51691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270629|gb|EGA54074.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|332990723|gb|AEF09706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|28872709|ref|NP_795328.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|38257457|sp|Q87TS3|MNMG_PSESM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28855965|gb|AAO59023.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 630

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 389/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  ++  SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPILVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCAD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|156936121|ref|YP_001440037.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cronobacter sakazakii ATCC BAA-894]
 gi|205831508|sp|A7MMW3|MNMG_ENTS8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156534375|gb|ABU79201.1| hypothetical protein ESA_04015 [Cronobacter sakazakii ATCC BAA-894]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/616 (46%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYKQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +   ++Q  D  +  FSFM     + RQ+ C +T 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDQQHGDNPMPVFSFMGSADQHPRQVPCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S + +     R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRYSAEKEGWAPGRSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RF + ++     R  L+S  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEVGREMGLVDDARWARFNEKLENIERERQRLRSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S   I+        +  +  + L  P+ +   L S+   A     +   E+++I+ 
Sbjct: 487 PSTASVEEINTMLTAPLSREASGEDLLRRPEMTYAQLTSLSAFAPALDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVNGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|58584868|ref|YP_198441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75497718|sp|Q5GS25|MNMG_WOLTR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58419184|gb|AAW71199.1| NAD/FAD-utilizing enzyme apparently involved in cell division, GidA
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 677

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 301/647 (46%), Positives = 391/647 (60%), Gaps = 58/647 (8%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           ST LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  STLLITHKISTIGEMSCNPAIGGVAKGIVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+ +NL V +  V  F  E N      I +I+      
Sbjct: 88  AVWGPRAQADRKLYKKAIQEIILNHDNLTVKEESVDDFLIESNSNGEPYIKAIITSSGKQ 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFL+G++HIG+   P+GRMGD  +  L N+  K+DF  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLQGMVHIGEQTTPSGRMGDKSAVELANTLKKYDFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-Y 263
           D  TI W   E+Q  +   +PFS++T+KI   Q+ C IT TN  THRII  N+  SA  Y
Sbjct: 208 DRSTINWSILEEQVGNNPPMPFSYLTEKINQPQVSCFITYTNENTHRIIQANLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             DI    PRYCPSIE K+ +F E+N HQIFLEPEGL+   VYPNGIS +LP E+Q + I
Sbjct: 268 LNDI--VAPRYCPSIEAKVKKFAEKNSHQIFLEPEGLDNITVYPNGISNSLPIEVQREMI 325

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            +I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA QG+
Sbjct: 326 NSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGI 385

Query: 384 VAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           +AGIN+A   S K +     RTDSYIGVMIDDL +KGV EPYR+FTSRAEYR+++R DNA
Sbjct: 386 IAGINAALSASQKKESFVLHRTDSYIGVMIDDLVTKGVTEPYRLFTSRAEYRLAIRSDNA 445

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G  +  +  +R       ++    L   L+SL +T + L    I    DG  +
Sbjct: 446 DRRLTQKGYNISLVSYKRYSALQNKLKSIKQLEEKLESLKITPEQLRFCGIKISHDGIRK 505

Query: 503 TAYEFLSYPDFSIQNLFSICP--------------------------------------- 523
           TA + LSYP+     L  I P                                       
Sbjct: 506 TALDLLSYPNIDWNKLQEIWPELTNVTRWNDNKADQTVIQVVDTRIQKKNADSSVTRWND 565

Query: 524 ------DARKFSSL----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                 D++  S+     + E + IE+ Y  Y  RQ  + K ++ E    IP +F+YS +
Sbjct: 566 KTGYWNDSKTTSNTIKNEICEAVAIEAKYKPYLVRQEADMKFLREEMNTQIPTNFNYSQI 625

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
             LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 626 KGLSSEVIEKLQAIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 672


>gi|300719171|ref|YP_003743974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           glucose-inhibited division protein A [Erwinia billingiae
           Eb661]
 gi|299065007|emb|CAX62127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           Glucose-inhibited division protein A [Erwinia billingiae
           Eb661]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/616 (47%), Positives = 391/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAHAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  +VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKSVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +   + Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDPQHGDTPMPVFSFMGNVSQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNENTHEVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKHIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKETWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEKERQRLRDIWVH 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            K+ S   ++        K  +  + L  P+ + Q L ++   A   +     E+++I+ 
Sbjct: 487 PKSDSVEEVNGVLSAALTKEASGEDLLRRPEMTYQQLMTLSTFAPALADPQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    +  E  L+P + DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEINRQQRNENTLLPAELDYHQVSGLSNEVIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|192359013|ref|YP_001984271.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Cellvibrio japonicus Ueda107]
 gi|238692448|sp|B3PIT8|MNMG_CELJU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|190685178|gb|ACE82856.1| glucose-inhibited division protein A [Cellvibrio japonicus Ueda107]
          Length = 638

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/614 (46%), Positives = 396/614 (64%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA   AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEACLAAARMGCKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDKGGIQFRVLNARKGPAVRATRAQADRILYKAAIRHTLENQPNLWIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLT GTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLKFMADQVVLTAGTFLGGLIHIGLENYSGGRAGDPPSIALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
             +      RLKTGTP R+D +T+ +D  EKQ+ DE     S   ++ +   QI C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARTVNFDLLEKQWGDEPRPVMSVRGNRAMQPPQICCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 247 TNERTHEVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ NP++L  +LET+ I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSMRGFENAHILRPGYAIEYDFFNPQDLQHSLETRVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN+A ++      C +R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINAALRAQGKAAWCPTRDQAYMGVLVDDLITLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG IG+ + + F +  ++    +  LKS  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLIGDEQWQLFCEKREQIALEQQRLKSTWIQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + +  +  I  K + +    Y   + L  P+ +  ++ S+  +     +   E+++IE+ 
Sbjct: 487 AGSAEAEQIEAKINVRLAREYSLMDLLKRPELNYADVASLKGEPLAGEA-AAEQVEIEAK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   ++  E  LIP+D DY+ +  LSNE+K+KLS  +P  L +A++I G+
Sbjct: 546 YAGYIDRQQDDINRLRAYENTLIPEDLDYAQVEGLSNEVKQKLSAARPQTLARAARISGI 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++L+L+Y+KK
Sbjct: 606 TPAAISLVLVYLKK 619


>gi|146328969|ref|YP_001209581.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dichelobacter nodosus VCS1703A]
 gi|166222931|sp|A5EV65|MNMG_DICNV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146232439|gb|ABQ13417.1| glucose inhibited division protein A [Dichelobacter nodosus
           VCS1703A]
          Length = 632

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/622 (48%), Positives = 399/622 (64%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+T    TIG MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGVEAACAAARMGCDTLLLTQNIETIGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+M R  D AGI +R+LN +KG AV+  R QADR LY+ A++  +  QE+L V Q EV+
Sbjct: 67  DGVMARATDRAGIHWRILNRRKGAAVQATRAQADRVLYKAAVRALVEKQEHLRVFQTEVS 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G       +  +  Q        TV++T GTFL G I++G      GR GD  +  L N 
Sbjct: 127 GILLNGETVIGVSSQHKIDFHAKTVIITAGTFLGGKIYVGLNYFVGGRAGDPAALELANK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F+T R+KTGTP R+D ++I + +  +Q  DE L  FS++ +   + RQI C IT 
Sbjct: 187 LRDLPFETHRMKTGTPPRIDARSIDFSQMSEQLGDEPLPVFSYLGNVNEHPRQIPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           TN +TH II E I  + +Y+G IK ++GPRYCPSIEDK++RF ++  HQIFLEPE L T+
Sbjct: 247 TNTQTHDIIREYIDQAPMYAGVIKDAFGPRYCPSIEDKVMRFHDKTSHQIFLEPESLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP E Q +++ TI GLE+  I RPGYAIEYD+ NP+ L  TLETK I  L
Sbjct: 307 EIYPNGISTSLPFEAQLKYVHTIKGLEQAIITRPGYAIEYDFFNPQGLRYTLETKAIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+A +    +     R  +Y+GV+IDDL ++G  EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAALRVYDKEGWYPRRDQAYLGVLIDDLITQGTREP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT IG +LGC+G  R K+F   +         LK L++
Sbjct: 427 YRMFTSRAEHRLLLREDNADQRLTAIGYQLGCVGSARMKQFDAKMTAVAHASDQLKKLLI 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSIC--PDARKFSSLVIERLQIE 539
            +  LS         G T   Y  E L  P+  ++ + ++   P     S  VIE++ I 
Sbjct: 487 PADRLS---------GLTHNTYAAELLKRPEIDVRAVLALANVPPDEYPSDEVIEQIDIA 537

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ  E  +++    + +P  FDY  +  LS EL EKL  ++P +L QA++I 
Sbjct: 538 AKYSGYIQRQYEEVAKLQKNRAQKLPVPFDYRKVTGLSAELAEKLQKVQPHDLDQAARIA 597

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           GMTPAAL+LLLIY KK+T  L+
Sbjct: 598 GMTPAALSLLLIYFKKHTQPLS 619


>gi|56415742|ref|YP_152817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197364670|ref|YP_002144307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81170575|sp|Q5PJX1|MNMG_SALPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690766|sp|B5BIP5|MNMG_SALPK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56129999|gb|AAV79505.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096147|emb|CAR61743.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKERWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|83649685|ref|YP_438120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hahella chejuensis KCTC 2396]
 gi|123529920|sp|Q2S6M9|MNMG_HAHCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83637728|gb|ABC33695.1| glucose-inhibited division protein A [Hahella chejuensis KCTC 2396]
          Length = 629

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/617 (47%), Positives = 402/617 (65%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +S+DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+E+D
Sbjct: 5   KSFDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQG 122
           AL G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +Q NL + Q 
Sbjct: 65  ALGGAMALATDRAGIQFRVLNSRKGPAVRATRAQADRALYKAAI-REILENQPNLTIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  + + ++ +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L
Sbjct: 124 AADDLIMQGDHVAGVVTQMGLRFHSKTVVLTTGTFLGGVIHIGLENHSGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
                +  F  GRLKTGTP R+D +++ +   E Q  D  +   SFM +  +   Q+ C 
Sbjct: 184 AKRLREMPFRVGRLKTGTPPRIDARSVDFSVMEAQPGDTPIPVMSFMGSVDLHPHQVNCF 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  TH II   +  S +Y+G I+  GPRYCPSIEDK+ RF +++ HQ+F+EPEGL+
Sbjct: 244 ITRTNERTHEIIRGGMDRSPMYTGVIEGVGPRYCPSIEDKVNRFSDKDSHQVFIEPEGLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q + +I G+E  +I RPGYAIEYD+ NP++L  +LETK + 
Sbjct: 304 THELYPNGISTSLPFDVQLQLVHSIQGMENAHITRPGYAIEYDFFNPQDLKHSLETKFVG 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+A ++ + +     R ++YIGV++DDL + G  
Sbjct: 364 SLFFAGQINGTTGYEEAAAQGLLAGMNAALRAQEKEAWSPRRDEAYIGVLVDDLITMGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG I + R + F +  +     +  LKS+
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLTEKGRELGMIDDERWRVFCEKREAIAREQQRLKSI 483

Query: 482 VL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   T K   +  +   +  +  + ++ L  P+ + + L  +  D       V E+L+I
Sbjct: 484 WIQPATEKARKAAELLETELTREYSLHDLLKRPEMTWEKLSLLDADVAATPYEVAEQLEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  RQ  E + ++  E   +P D DYS +  LSNE+K+KL+ ++P  L QAS+I
Sbjct: 544 QVKYAGYIDRQQEEIERLRRNENMALPADLDYSGIQGLSNEIKQKLTEVRPETLAQASRI 603

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LLL+++KK
Sbjct: 604 PGVTPAAVSLLLVHLKK 620


>gi|260753423|ref|YP_003226316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552786|gb|ACV75732.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 621

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/614 (47%), Positives = 406/614 (66%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVREIDA 
Sbjct: 11  FDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVREIDAW 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+QR +  Q +L +I+G   
Sbjct: 71  DGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQRALKEQAHLTIIEGMAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS  L   
Sbjct: 131 SFQMDKGKVKAVLLADGRSLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSIGLAEQ 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF-SFMTDKITNRQIECGITR 244
               D   GRLKTGTPARLDG+TI W + ++Q +DE      S+ T ++   QI C +TR
Sbjct: 191 LKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGTGRVAP-QIACSLTR 249

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+T +
Sbjct: 250 SNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGLDTPL 309

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K + G+F
Sbjct: 310 IYPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKAMKGVF 369

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGVMIDDL  +GV EPY
Sbjct: 370 CAGQINGTTGYEEAAAQGLVAGISAACAVAGKTSPVFDRRNSYIGVMIDDLVLQGVTEPY 429

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+    +
Sbjct: 430 RMLTARAEYRLGLRADNAVTRLSGQAKAFGALGAEMTAFVTKRLAEREKCQKLLEK-AAS 488

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           S+++ +   +  + G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  +  YA 
Sbjct: 489 SRDMQAVGANVTE-GASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDGRYAP 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E   +   +   +P + DY+++  LSNE+ E+ S  +P ++  AS++ G+TPA
Sbjct: 548 YLERQDAELARLAGHDNMPLPAELDYAAIAGLSNEMVERFSAARPPDMASASRVRGVTPA 607

Query: 605 ALNLLLIYIKKNTV 618
           AL  +LI+ KK T+
Sbjct: 608 ALAAILIHAKKVTL 621


>gi|312174362|emb|CBX82615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora ATCC BAA-2158]
          Length = 629

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/616 (48%), Positives = 389/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +T+ +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRFGRLKTGTPPRIDARTVDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHQVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEQERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVAQVNSVISAALTKEASGEDLLRRPEMTYQQLMTLKHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  ++P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTVLPVDLDYQQVSGLSNEAIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|332308610|ref|YP_004436461.1| glucose inhibited division protein A [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175939|gb|AEE25193.1| glucose inhibited division protein A [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 633

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/619 (47%), Positives = 395/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIV+GGGHAG EAA  AA++G++T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   QQQFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D AGIQFR LN  KGPAVR  R QADR LYR A++  +  Q+NL + Q 
Sbjct: 64  DALGGSMATAIDKAGIQFRTLNSSKGPAVRATRAQADRSLYRSAIRDIVEHQDNLTIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E + ++ +V Q        +VV+T GTFL G IHIG      GR GD PS +L
Sbjct: 124 SCDDLIVENDQVTGVVTQMGLKFHARSVVITVGTFLGGTIHIGMENYKGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            +      F   RLKTGTPARLD +T+ +   ++Q  D     FSFM  +  + RQI C 
Sbjct: 184 ADRLRALPFRVSRLKTGTPARLDARTLDYSVMQEQLGDSPTPVFSFMGKREDHPRQIACY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLN
Sbjct: 244 ITHTNSKTHDIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  VYPNGIST+LP ++Q + +R+I G E  +IIRPGYAIEYD+ +P++L  TLETK I 
Sbjct: 304 SIEVYPNGISTSLPFDVQFELVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQTLETKFIK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGLVAG N++ +    D +   R ++Y+GV+IDDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAGAQGLVAGANASLQCQGKDPLILRRDEAYMGVLIDDLATMGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + E R + F + ++     R  L+  
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADIRLTTKGHELGLVDEERWQAFNRKLEAIELERQRLRDT 483

Query: 482 VLTSKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +  K+ ++  ++   K    K  T  + +  P+ + + L  +       +     E+++
Sbjct: 484 WVHPKHAAADVLNPLLKNALSKENTLEDLIRRPEMTYETLMKVTDFGPGIADPKAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E  + +  E  LIP DFDYS +  LSNE+  KL+  KP  L  AS+
Sbjct: 544 IQIKYAGYIERQQEEIAKSRKNENTLIPVDFDYSQISGLSNEVVAKLTDAKPETLGLASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+Y+KK+
Sbjct: 604 ISGITPAAISLLLVYLKKH 622


>gi|261341602|ref|ZP_05969460.1| hypothetical protein ENTCAN_08064 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315953|gb|EFC54891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacter cancerogenus ATCC 35316]
          Length = 629

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/616 (46%), Positives = 398/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPGRSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LK+  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIERERQRLKTTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            +  ++  ++        +  +  + L  P+ + ++L ++   A         E+++I+ 
Sbjct: 487 PQAETAAEVNTHLTAPLSREASGEDLLRRPEMTYESLVNLTAFAPGLDDAEAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|302185834|ref|ZP_07262507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae 642]
          Length = 630

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCTDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|90415383|ref|ZP_01223317.1| Glucose-inhibited division protein A subfamily protein [marine
           gamma proteobacterium HTCC2207]
 gi|90332706|gb|EAS47876.1| Glucose-inhibited division protein A subfamily protein [marine
           gamma proteobacterium HTCC2207]
          Length = 622

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/616 (46%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EA   AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDA
Sbjct: 6   SFDVIVVGGGHAGTEACLAAARMGSKTLLLTHNIETLGQMSCNPAIGGIGKTHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A+   + +Q+NL + Q  V
Sbjct: 66  LGGAMAKATDLGGIQFRVLNSRKGPAVRATRAQADRVLYKAAILEILQNQQNLTLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++ +V Q     +  TVV+T GTFL G IHIG     AGR GD P+ +L  
Sbjct: 126 DDLILEGDSVTGVVTQMGLTFKAKTVVVTAGTFLAGKIHIGMENYSAGRAGDPPALNLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   RLKTGTP R+D +++ + +  +Q+ D+     S++     + +Q  C IT
Sbjct: 186 RLRSLPFRVERLKTGTPPRIDARSVDFSQLPEQWGDQPEPVMSYLGSVTQHPKQTCCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +Y+G I   GPRYCPSIEDK+VRF ++N HQIF+EPEGLNT 
Sbjct: 246 YTNSQTHDIIKGGMDRSPLYTGVIDGVGPRYCPSIEDKVVRFADKNQHQIFIEPEGLNTY 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYDY NP++L  +LETK + GL
Sbjct: 306 ELYPNGISTSLPFDVQLSLVRSIVGFENAHITRPGYAIEYDYFNPQDLKYSLETKSVKGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGTNAALQVQGRESWCPRRDEAYIGVLVDDLITMGTTEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K+F+   +     R  LKS  +
Sbjct: 426 YRMFTSRAEYRLLLREDNADMRLTEKGRELGLVDDDRWKQFSDKREAIELERQRLKSTWI 485

Query: 484 TSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + ++  +S   + K    Y   E L  P+   + + S+ P+  +    + E+++I++
Sbjct: 486 QPTSDTAEKLSAHIENKLSHEYSLFELLKRPEIDYKIIGSLYPE-HQVEHKIAEQVEIDA 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E   ++  E   IP +F+Y S+  LSNE+K+KLS   P  L +A +I G
Sbjct: 545 KYSGYIIRQQDEVNRLRRHENTRIPVNFNYQSVKGLSNEVKQKLSEATPETLARAGRIPG 604

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LL++ +KK+
Sbjct: 605 VTPAAISLLIVQLKKH 620


>gi|227113932|ref|ZP_03827588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 629

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 395/620 (63%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            +        +L  T +S + +G+     E L  P+     L ++   A   +     E+
Sbjct: 487 PQSEQLDQVNSLLKTPLSREANGE-----ELLRRPEVDYVQLTALPLFAPGLTDEQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQQRNENALLPADLDYKQVSGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LLI++KK
Sbjct: 602 SRISGITPAAISILLIWLKK 621


>gi|32034340|ref|ZP_00134540.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126209119|ref|YP_001054344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae L20]
 gi|166222902|sp|A3N2V3|MNMG_ACTP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126097911|gb|ABN74739.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 630

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 390/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|307547045|ref|YP_003899524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halomonas elongata DSM 2581]
 gi|307219069|emb|CBV44339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halomonas elongata DSM 2581]
          Length = 631

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/614 (47%), Positives = 392/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARTGCRTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D  GIQFRVLN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q    
Sbjct: 67  GGAMGLATDMGGIQFRVLNARKGPAVRATRAQADRVRYKAAIRGMLENQANLTIFQQAAG 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +  +        TVVL TGTFL GVIHIG      GR GD PSN+L   
Sbjct: 127 DLIVEGDQVRGVCTETGIRFMSETVVLCTGTFLGGVIHIGLDNSRGGRAGDPPSNALAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP RLD K++ + K ++Q  DE     S++ ++  + RQ+ C I  
Sbjct: 187 LRALPFRVDRLKTGTPPRLDAKSVDFSKLDEQPGDEPTPVMSYLGERSQHPRQVSCHIAH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N++ S ++SG I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL+T  
Sbjct: 247 TNERTHEIIHANLERSPMFSGVIEGVGPRYCPSIEDKVHRFADKSSHQIFVEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I GLE  +I RPGYAIEYD+ +P++L  +LETK I  L+
Sbjct: 307 LYPNGISTSLPFDVQLQVVRSIQGLENAHITRPGYAIEYDFFDPRDLKHSLETKFIHNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+AR++  LD     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAARRARGLDAWWPRRDEAYLGVLVDDLITLGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + ERR   F+   +      S L+S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADMRLTETGRELGLVDERRWTAFSAKREAVERETSRLRSSWVQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++  IS       +  Y   + L  P+   +++  +  +    +  V E++QI++ 
Sbjct: 487 PGSEAARRISETTGQSLKREYNLLDLLKRPEIGYRDVAGLVGEPVD-NDQVAEQVQIQAK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E  ++K  E   +P D DY  +  LSNE+++KL   +P  L QAS+I G+
Sbjct: 546 YQGYIDRQQDEIDKLKRHEATPLPDDLDYDQVDGLSNEIRQKLVEARPETLAQASRISGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA+++LLI++KK
Sbjct: 606 TPAAVSILLIHLKK 619


>gi|223041389|ref|ZP_03611593.1| glucose-inhibited division protein A [Actinobacillus minor 202]
 gi|223017779|gb|EEF16185.1| glucose-inhibited division protein A [Actinobacillus minor 202]
          Length = 630

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 295/619 (47%), Positives = 387/619 (62%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N++YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   NKTYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q 
Sbjct: 64  DAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  +  L
Sbjct: 124 EVVDILVENNRAVGAVTKMGLTFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAATML 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
            +     +    RLKTGTP RLD +TI +D   KQ  D+ L   SFM + +   RQI C 
Sbjct: 184 ADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDDVLPVMSFMGSVEQHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL 
Sbjct: 244 ITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I 
Sbjct: 304 TIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+  +    +    +R  +Y GV++DDL + G  
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWFPTRDLAYTGVLVDDLCTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ LK  
Sbjct: 424 EPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWTRFNEKMENIEKEKARLKQT 483

Query: 482 V--LTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
              L   NL+  +        +  +  + +  P+ + + L  I P A         E+++
Sbjct: 484 WAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ QAS+
Sbjct: 544 ISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+ +KK 
Sbjct: 604 ISGITPAAISILLVNLKKQ 622


>gi|254491056|ref|ZP_05104237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylophaga thiooxidans DMS010]
 gi|224463569|gb|EEF79837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylophaga thiooxydans DMS010]
          Length = 627

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/615 (46%), Positives = 388/615 (63%), Gaps = 4/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  +A+ G  T L+T    T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALASARQGVKTLLLTQNIETLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M + AD  GIQFR LN  KGPAVR  R QADR  Y+ A++  + +Q NL + Q  V 
Sbjct: 67  GGIMAQAADRGGIQFRTLNSSKGPAVRATRAQADRVRYKAAVRAYLENQPNLYIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q        +VVLT GTFL G+IHIG      GR GD  S +L   
Sbjct: 127 DLVVENDRVVGVVTQVGLRFSAKSVVLTVGTFLGGLIHIGMQNHQGGRAGDPASIALSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP R+   +I +    +Q  D     FSF+  +  + RQI C IT 
Sbjct: 187 LRSLPFRVDRLKTGTPPRIATSSIDFSVLTEQPGDNPTPVFSFLGKQADHPRQISCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG+I+  GPRYCPSIEDK+VRF +R  HQIFLEPEGL    
Sbjct: 247 TNEHTHEVIRNNLDRSPMYSGEIEGIGPRYCPSIEDKVVRFADRTAHQIFLEPEGLEPGE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q++ +R++ GLE  +I RPGYAIEYD+ +P++L PTLETK + GLF
Sbjct: 307 VYPNGISTSLPFDVQYEIVRSMKGLENAHITRPGYAIEYDFFDPRDLQPTLETKHMGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+  ++  LD     R ++YIGV+IDDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLIAGLNAGLQARGLDGWYPRRDEAYIGVLIDDLITSGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP+G +LG + + R   F+          + L+S    
Sbjct: 427 RMFTSRAEYRLMLREDNADIRLTPVGRQLGIVDDERWAIFSAKQDAVAKENARLESFKFV 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            + +  T+   +  ++  K  +A E L  P      L  +    +  +  V E++ I++ 
Sbjct: 487 PEKIDQTTAEAVLGEKLNKVTSAIELLRRPKVDYAMLLELMGTEQAVADDVAEQVVIQTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  E   ++  E   +P + DY ++  LSNE++EKL   +P NL QA++I G+
Sbjct: 547 YSGYINRQQNEIDRLQRNENMSLPTNMDYKNVRGLSNEVREKLEQARPVNLGQAARISGV 606

Query: 602 TPAALNLLLIYIKKN 616
           TPAA++LLL+++K++
Sbjct: 607 TPAAVSLLLVHLKRS 621


>gi|331007814|ref|ZP_08330919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC1989]
 gi|330418381|gb|EGG92942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC1989]
          Length = 637

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/625 (46%), Positives = 404/625 (64%), Gaps = 13/625 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIVIGGGHAG EA   AA++G ST L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 4   SHHYDVIVIGGGHAGTEACLAAARMGCSTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQ 121
           DA+ G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +QENL + Q
Sbjct: 64  DAMGGAMAQATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAV-REILENQENLQIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q       ++VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QSVDDLIIEGDTVKGVVTQMGLKFYGTSVVLTAGTFLGGKIHIGLENHSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +F     RLKTGTP R+D K++ + + ++Q+ D  L   S+M +   +  Q+ C
Sbjct: 183 LADRLREFPLRVDRLKTGTPPRIDAKSVDFSQLQEQWGDTPLPVMSYMGNVADHPEQVCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL
Sbjct: 243 WITYTNQKTHDIIRSGMDRSPMYTGVIEGVGPRYCPSIEDKVSRFADKDSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I G E  +I+RPGYAIEYDY NP++L  +LET+ I
Sbjct: 303 KTHELYPNGISTSLPFDVQLELVRSINGFENAHIMRPGYAIEYDYFNPQDLRSSLETRCI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N+  ++   +  C  R  +YIGVM+DDL + G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGLNAGLRAQDKESWCPRRDQAYIGVMVDDLITLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD+RLT    +LG I + R + F +  +        LK+
Sbjct: 423 QEPYRMFTSRAEHRLLLREDNADSRLTEKARELGLIDDMRWQAFNEKKESIAKEEQRLKT 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSS------- 530
             + + +  + ++  K        Y   E L  P+ +  +L  +     +F+        
Sbjct: 483 TFVQANSDQANALVEKIKTPLTREYNLMELLKRPELTYADLGELFFKDSEFADSHVKIDP 542

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V ++++I + Y+ Y  RQ  E K ++  E+  +P DFDYS++  LSNE K+KL  +KP 
Sbjct: 543 QVSQQIEISAKYSGYIQRQEEEVKRLRQHEETPLPIDFDYSTVEGLSNEAKQKLMTMKPE 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           +L +AS+I+G+TPAA++LLL+Y+KK
Sbjct: 603 SLGRASRIQGITPAAISLLLVYLKK 627


>gi|238921734|ref|YP_002935249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella ictaluri 93-146]
 gi|238871303|gb|ACR71014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Edwardsiella ictaluri 93-146]
          Length = 629

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/616 (46%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRILYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI +    +Q  D     FSF+ +   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSVLAQQHGDNPAPVFSFLGEASQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL+++ 
Sbjct: 247 TNEHTHEVIRGNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLSSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMAGMQNTRIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +  L+     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAADLEGWMPRRDEAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R  +F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDVRWAQFNQKLENMERERQRLRETWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+  +  ++  K    +  +  + L  P+     L S+ P     +     E+++I+ 
Sbjct: 487 PQSERAAEVNVLLKTPLSREASGEDLLRRPEMDYATLTSLSPFYPPLADRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYQGYIARQQDEIEKQLRNENTLLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|330952340|gb|EGH52600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae Cit 7]
 gi|330987013|gb|EGH85116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 630

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCIDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|227327865|ref|ZP_03831889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 629

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 395/620 (63%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K I GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            +        +L  T +S + +G+     E L  P+     L ++   A   +     E+
Sbjct: 487 PQSEQLDQINSLLKTPLSREANGE-----ELLRRPEVDYVQLTALPLFAPGLTDEQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQQRNENALLPADLDYKQVSGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LLI++KK
Sbjct: 602 SRISGITPAAISILLIWLKK 621


>gi|123444382|ref|YP_001008347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166224338|sp|A1JTD9|MNMG_YERE8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122091343|emb|CAL14229.1| glucose inhibited division protein A [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 629

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N++  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVAEINAVLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|253690608|ref|YP_003019798.1| glucose inhibited division protein A [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495849|sp|C6DJG3|MNMG_PECCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|251757186|gb|ACT15262.1| glucose inhibited division protein A [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 629

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 394/620 (63%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMTGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDHRWARFNEKLESIEKERQRLRDIHIH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            +        +L  T +S + +G+     E L  P+     L ++   A   +     E+
Sbjct: 487 PQSELLDQVNSLLKTPLSREANGE-----ELLRRPEVDYVQLTALPLFAPGLTDEQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQLRNENTLLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LLI++KK
Sbjct: 602 SRISGITPAAISILLIWLKK 621


>gi|167854772|ref|ZP_02477550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis 29755]
 gi|167854070|gb|EDS25306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis 29755]
          Length = 630

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 299/622 (48%), Positives = 387/622 (62%), Gaps = 6/622 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI R  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MIYREIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+
Sbjct: 61  KEIDAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  +
Sbjct: 121 FQQEVVDILVENNRAVGAVTKMGLAFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQI 238
             L +     +    RLKTGTP RLD +TI +D   KQ  DE L   SFM + +   RQI
Sbjct: 181 TMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVMSFMGSVEQHPRQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPE
Sbjct: 241 PCYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK
Sbjct: 301 GLTTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AGIN+  +    D    +R  +Y GV++DDL + 
Sbjct: 361 AIDGLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWFPTRDLAYTGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ L
Sbjct: 421 GTKEPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWARFNEKMENIEKEKARL 480

Query: 479 KSLV--LTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIE 534
           K     L   NL+  +        +  +  + +  P+ + + L  I P A         E
Sbjct: 481 KQTWAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ Q
Sbjct: 541 QVEISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+ +KK 
Sbjct: 601 ASRISGITPAAISILLVNLKKQ 622


>gi|259910326|ref|YP_002650682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia pyrifoliae Ep1/96]
 gi|224965948|emb|CAX57481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           Glucose-inhibited division protein A [Erwinia pyrifoliae
           Ep1/96]
 gi|283480449|emb|CAY76365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia pyrifoliae DSM 12163]
          Length = 629

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/616 (48%), Positives = 387/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D  L  FSFM D +   +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSLLAPQHGDNPLPVFSFMGDVRQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAAGRELGLVDDARWARFNEKLESIEQERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVADVNSVISAALTKEASGEDLLRRPEMTYQQLMTLSHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E   +P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTALPVDLDYQQVSGLSNEAIAKLNESKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|88607384|ref|YP_504843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma phagocytophilum HZ]
 gi|123495646|sp|Q2GLA8|MNMG_ANAPZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88598447|gb|ABD43917.1| pyridine nucleotide-disulfide oxidoreductase [Anaplasma
           phagocytophilum HZ]
          Length = 628

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/590 (48%), Positives = 385/590 (65%), Gaps = 6/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L+THK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+V D + I   +LN  KGPA
Sbjct: 29  TLLVTHKVESIGEMSCNPAIGGIAKGVVVREVDALDGLMGKVIDKSSIHSIILNRSKGPA 88

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT----EKNIISSIVMQDNSMIR 146
           V GPR QADRE+Y+  M+  +L  ENL VI  EV  F      E+  ISS+++ +  +I+
Sbjct: 89  VWGPRAQADREVYKPTMRDMVLHYENLTVISEEVVDFTVDGVEERPQISSVLLSNGELIK 148

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
            + +V  TGTFL G IH+G    PAGR+GD PS  L  +     F  GRLKTGTP R+D 
Sbjct: 149 TTRLVFATGTFLGGTIHVGNESFPAGRIGDKPSTKLPQALTAHGFQLGRLKTGTPPRIDR 208

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
            +I W K  +Q  D    PFSFM++ ++  QI C +T TN +TH II  N+  +      
Sbjct: 209 DSINWSKLLEQKGDVLPTPFSFMSECVSLPQISCYVTHTNEKTHEIIRRNLHLAGSRCES 268

Query: 267 I-KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           +     PRYCPSIE+KI RF +   HQIFLEPEGL T+ VYPNGIST+ P E+Q + +R+
Sbjct: 269 LLDVMAPRYCPSIEEKIRRFPDHKSHQIFLEPEGLETNSVYPNGISTSCPIEVQLEMLRS 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE+  ++R GY +EY++I+P+EL+ TLETKKI GLF AGQINGTTGYEEAA QG+VA
Sbjct: 329 INGLEQAVMLRHGYTVEYNFIDPRELYHTLETKKIKGLFCAGQINGTTGYEEAAGQGIVA 388

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A       + +   R+DSYIGVMIDDL + G  EPYR+FTSRAEYR++LR DNAD 
Sbjct: 389 GANAALSLVQNQEPLVLKRSDSYIGVMIDDLVTLGTSEPYRLFTSRAEYRLTLRSDNADM 448

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT IG     + + R  R ++  QE + L + LK +V T  +++   I+  Q+G+ + A
Sbjct: 449 RLTEIGRAYSLVSQERFDRLSQKKQEMHALLNALKGIVATPNDIAEYDIAIAQNGEKKNA 508

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E LS+P+ +++ L  I P  R FS+  +  ++IE  YA Y  RQ  + K    EE   I
Sbjct: 509 FELLSHPNINMEVLLKIWPSLRSFSAGTLALMEIEGKYAPYLKRQEADIKSFLEEENLSI 568

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           PKD  YS +  LS E +EKL  +KPF++  A +I G+TPAA+  +LI+++
Sbjct: 569 PKDILYSDVYGLSKEAQEKLQAVKPFSIGAARRIPGITPAAIANILIHLR 618


>gi|331011893|gb|EGH91949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 630

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L +I    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCTDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|257485605|ref|ZP_05639646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 631

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L +I    C D +     V E+++
Sbjct: 488 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCTDPQ-----VAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 543 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 603 IPGVTPAAISLLMIHLKK 620


>gi|152972650|ref|YP_001337796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|262040354|ref|ZP_06013600.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330005171|ref|ZP_08305133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. MS 92-3]
 gi|205831537|sp|A6TG45|MNMG_KLEP7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150957499|gb|ABR79529.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259042295|gb|EEW43320.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536377|gb|EGF62736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. MS 92-3]
          Length = 629

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  S+  ++        +  +  + L  P+ + + L  + P           E+++I+ 
Sbjct: 487 PQAESANEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|303249898|ref|ZP_07336100.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307250950|ref|ZP_07532876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307253322|ref|ZP_07535194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650961|gb|EFL81115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306856978|gb|EFM89108.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859186|gb|EFM91227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 630

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 390/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|50123437|ref|YP_052604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium atrosepticum SCRI1043]
 gi|81170541|sp|Q6CYI6|MNMG_ERWCT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49613963|emb|CAG77416.1| glucose inhibited division protein A [Pectobacterium atrosepticum
           SCRI1043]
          Length = 629

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 394/620 (63%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLPQQHGDNPMPVFSFLGNAGQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLSADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            +        +L  T +S + +G+     E L  P+     L ++   A   +     E+
Sbjct: 487 PQSELLDQVNSLLKTPLSREANGE-----ELLRRPEVDYAQLTALPLFAPGLTDEQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQLRNENALLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LLI++KK
Sbjct: 602 SRISGITPAAISILLIWLKK 621


>gi|251791738|ref|YP_003006459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dickeya zeae Ech1591]
 gi|247540359|gb|ACT08980.1| glucose inhibited division protein A [Dickeya zeae Ech1591]
          Length = 629

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/621 (46%), Positives = 395/621 (63%), Gaps = 15/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIALSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+     +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFLGKASEHPTQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMQNARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGMVDDERWARFNEKLENIEKERQRLRDVLVH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
                     +L  + +S + +G+       + Y   +   +F+   PD +       E+
Sbjct: 487 PHSEGVEQINSLLKSPLSREANGEDLLRRPEMDYVQLTGLPMFAPALPDVQ-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQDEIEKQQRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPSSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGITPAAISILLVWLKKQ 622


>gi|238897248|ref|YP_002921996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238549578|dbj|BAH65929.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 629

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDSRTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  S+  ++        +  +  + L  P+ + + L  + P           E+++I+ 
Sbjct: 487 PQAESANEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|62182357|ref|YP_218774.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479634|sp|Q57HW9|MNMG_SALCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62129990|gb|AAX67693.1| associate with glucose-inhibited division [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716851|gb|EFZ08422.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 629

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 393/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TP A+++LL+++KK 
Sbjct: 607 VTPVAISILLVWLKKQ 622


>gi|213968448|ref|ZP_03396591.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato T1]
 gi|301384265|ref|ZP_07232683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato Max13]
 gi|302131968|ref|ZP_07257958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926736|gb|EEB60288.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato T1]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 388/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCAD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|237747167|ref|ZP_04577647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes HOxBLS]
 gi|229378518|gb|EEO28609.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes HOxBLS]
          Length = 640

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/624 (47%), Positives = 405/624 (64%), Gaps = 12/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA V+A++G +T LITH   T+G +SCNP+IGG+GK HLVRE+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALVSARMGRNTLLITHNFETLGQLSCNPSIGGIGKSHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M   AD AGIQFRVLN  KGPAVR  R Q DR +YR A++ E+ +QENL + Q +V
Sbjct: 66  LGGVMALAADKAGIQFRVLNSSKGPAVRATRVQIDRVIYRQAIRYELENQENLFLFQQQV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  ++ +  +     R S VVLT GTFL G I +G      GR GD P+ +L  
Sbjct: 126 DDLIVEQGKVAGVRTEGGVEFRSSAVVLTAGTFLDGKIFVGLNSYSGGRSGDVPAIALAK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              + +   GRLKTGTP R+DG+TI +   ++Q+ D   IP FS   +  +   Q+ C I
Sbjct: 186 FLKELELPQGRLKTGTPPRIDGRTIDFSVMKEQWGDFDPIPVFSLRGNVSMHPEQLPCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +++G I+  GPRYCPSIEDKI RF ++N HQIFLEPEGL T
Sbjct: 246 THTNSGTHDIIRSGLDRSPLFTGVIEGVGPRYCPSIEDKIHRFSDKNSHQIFLEPEGLKT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP + Q + + +IPGLEK +I+RPGYAIEYD+ +P+ L  +LET++ISG
Sbjct: 306 HEYYPNGISTSLPFDTQIELVHSIPGLEKAHILRPGYAIEYDFYDPRCLKSSLETRQISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+AR     +     R ++Y+GVMIDDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAARYVTGDEPWVPKRNEAYLGVMIDDLITQGVNE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G K+GC+ + + + F +  ++       +KS  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTELGYKIGCVSKEQWENFQRKKEKIAREIERMKSTW 485

Query: 483 LTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDARKFSSLV 532
           +    LS   +  +  K   +  +  + L  PD +   L S+            +     
Sbjct: 486 VHPSMLSVKEAERVIGKGIEREYSLADLLRRPDVTYDGLMSMISVENGNWKTDEELDGSE 545

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ+ E K  ++ E   +P++ +YS + ALS E+++KL   KP  L
Sbjct: 546 KEQVEIQIKYAGYIERQLREVKRQQYYENLRLPENMNYSEVNALSFEVRQKLDKQKPETL 605

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
            QAS+I G+TPAA++LLLIY+KK 
Sbjct: 606 GQASRISGVTPAAISLLLIYLKKQ 629


>gi|307255565|ref|ZP_07537370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307260016|ref|ZP_07541728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306861414|gb|EFM93403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865852|gb|EFM97728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 390/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|303252046|ref|ZP_07338216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248704|ref|ZP_07530717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649110|gb|EFL79296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854631|gb|EFM86821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 391/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     + +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAITKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY ++ +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDNVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|302063884|ref|ZP_07255425.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato K40]
          Length = 631

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 388/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 488 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCAD-----PLVAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 543 IKTKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 603 IPGVTPAAISLLMIHLKK 620


>gi|330961498|gb|EGH61758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 388/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQLGMRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIALEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L +I    C D      LV E+++
Sbjct: 487 PGTEQGDAIASHFGTPLTHEYNLLNLLTRPEIDYASLIAITGEGCTD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|332163559|ref|YP_004300136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318608066|emb|CBY29564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325667789|gb|ADZ44433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861789|emb|CBX71962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia enterocolitica W22703]
          Length = 629

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 396/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N++  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVAEINAVLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYITRQQEEIEKQLRNENTLLPADLDYHQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|165977091|ref|YP_001652684.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|205831485|sp|B0BRY1|MNMG_ACTPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|165877192|gb|ABY70240.1| glucose inhibited division protein A [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPSATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGAVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGVIEGSGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|206578873|ref|YP_002241278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae 342]
 gi|288937917|ref|YP_003441976.1| glucose inhibited division protein A [Klebsiella variicola At-22]
 gi|206567931|gb|ACI09707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae 342]
 gi|288892626|gb|ADC60944.1| glucose inhibited division protein A [Klebsiella variicola At-22]
          Length = 629

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +  S+  ++        +  +  + L  P+ + + L  + P A         E+++I+ 
Sbjct: 487 PQAESAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLIQLSPFAPGLEDQQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  ++P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTVLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|320321681|gb|EFW77780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331116|gb|EFW87087.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 631

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 394/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L +I    C D +     V E+
Sbjct: 488 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCTDPQ-----VAEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 541 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 601 SRIPGVTPAAISLLMIHLKK 620


>gi|307133313|ref|YP_003885329.1| glucose-inhibited cell-division protein [Dickeya dadantii 3937]
 gi|306530842|gb|ADN00773.1| glucose-inhibited cell-division protein [Dickeya dadantii 3937]
          Length = 629

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAHAIDRAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSISLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+     +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAPQHGDDPMPVFSFLGKAGEHPTQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+    I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMANARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAMGRELGMVDDERWARFNEKLENIEKERQRLRDVLVH 486

Query: 485 SKNLSSTSI-SFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            +      I S  +   +R A   E L  P+     L  +   A   S     E+++I+ 
Sbjct: 487 PQTEGVEQINSLLKSPLSREANGEELLRRPEMDYAQLTGLAMFAPALSDAEAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPADLDYRQVTGLSNEVIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|66805185|ref|XP_636325.1| hypothetical protein DDB_G0289183 [Dictyostelium discoideum AX4]
 gi|60464699|gb|EAL62825.1| hypothetical protein DDB_G0289183 [Dictyostelium discoideum AX4]
          Length = 778

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 305/641 (47%), Positives = 414/641 (64%), Gaps = 34/641 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EA+A +A++G+ T LIT    TIG MSCNP+IGG+GKG+LVREID
Sbjct: 108 KEFDVIVIGGGHAGTEASAASARVGSKTLLITQSIDTIGVMSCNPSIGGVGKGNLVREID 167

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI--LSQEN---LD 118
           A+ G+MG  AD +G QF+VLN  KG AV GPR Q DRELYR ++   +  ++Q+N   L 
Sbjct: 168 AIGGIMGLAADESGCQFKVLNQSKGSAVHGPRAQIDRELYRESIHNLLWKITQDNGGNLS 227

Query: 119 VIQGEVAGF-------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           + +G V                   K  I  I++ +  +I+C  VV+TTGTFL G+IHIG
Sbjct: 228 IKEGMVEDIILDEEEGGEEGDNGKNKKTIKGIILDNGEIIKCKKVVITTGTFLGGIIHIG 287

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +IP+GRMGD  + +L  +  +  F+ GRLKTGTP RLDGK+I +    +Q  DE  +P
Sbjct: 288 NKRIPSGRMGDKAATALSLTLNRIGFELGRLKTGTPPRLDGKSIDYSVMVEQVGDEIPLP 347

Query: 226 FSFMTDKITN--RQIECGITRTNLETHRIIMENIK-HSAIYSG-DIKSYGPRYCPSIEDK 281
           FSF   K+ N  RQ++C +TRT  E+H+II++N+    A+ SG D K  GPRYCPSIE K
Sbjct: 348 FSFSNSKVKNDQRQLKCFMTRTTEESHQIIIDNLSSRPALESGEDGKGLGPRYCPSIETK 407

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQ+++EPEG  TDV+YPNGIS +LPE++Q +F++TIPGLE V +++PGYA+
Sbjct: 408 IERFQGKT-HQVWIEPEGYTTDVIYPNGISISLPEDVQMKFLKTIPGLENVKMLKPGYAV 466

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDYI+P+EL  TLETKKISGLFLAGQINGTTGYEEA AQG+VAGIN++        +  
Sbjct: 467 EYDYIDPRELNHTLETKKISGLFLAGQINGTTGYEEAGAQGIVAGINASLSHQNRPPMII 526

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR- 460
           SR++ YIGV+IDDL + GV EPYRMFTSR+EYRISLR  N+D RLT    + G     + 
Sbjct: 527 SRSEGYIGVLIDDLVTLGVTEPYRMFTSRSEYRISLRAHNSDQRLTEKAFEFGSASNHQL 586

Query: 461 ---QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSI 515
              +++ +   Q Y+ L+ + KS    S+ L+   I    + K  + +E L  P  DF++
Sbjct: 587 QALKEKQSLLDQVYSKLKEIKKS---PSEYLTQCGIENVHEKK--SLFEILRRPHVDFNL 641

Query: 516 QNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
              +       K   L I  +  E  Y+ Y  + +IE   ++  E +LIP   +Y  +  
Sbjct: 642 IKRYLPTDLLEKIPPLYISIIDSECKYSNYVDKHVIEFNNLRKRENQLIPPSLNYWDISQ 701

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           LS E K+ LS  +P N   ASKI G+TP+AL  + +YIKKN
Sbjct: 702 LSTESKQILSKARPTNFSSASKISGITPSALFSIQVYIKKN 742


>gi|251793666|ref|YP_003008396.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Aggregatibacter aphrophilus NJ8700]
 gi|247535063|gb|ACS98309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aggregatibacter aphrophilus NJ8700]
          Length = 629

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 392/617 (63%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R Q DR LYR A++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQVDRVLYRQAVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E++  + +V +        +V+LT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 SDILIEQDRATGVVTKMGLKFHAKSVILTAGTFLDGKIHIGLENYTGGRAGDPSSITLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +    +Q  D +L  FSFM     + RQI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTIDFSVLAEQHGDAQLPVFSFMGSVDQHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL T+
Sbjct: 246 HTNEKTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTTN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L  TLETK I GL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMKGLENARIIKPGYAIEYDYFDPRDLKLTLETKSIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAASQGLLAGINAGLYVQEKEAWFPRRDQAYMGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNRKMENIEQERQRLRSIWL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIE 539
             ++     +  +      +  +  + L  P+ + Q L ++ P     +    IE++QI 
Sbjct: 486 HPRSEYLEEANQVLGSPLVREASGEDLLRRPEINYQILTALTPFQPPMADKEAIEQVQIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E ++ K  E   IP  FDYS +  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIEKQKRHENTAIPPHFDYSKVAGLSNEVRIKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++++L+ +KK 
Sbjct: 606 GITPAAISIILVNLKKQ 622


>gi|260595793|ref|YP_003208364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cronobacter turicensis z3032]
 gi|260214970|emb|CBA26596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cronobacter turicensis z3032]
          Length = 629

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/616 (46%), Positives = 393/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYKQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +   ++Q  D  +  FSFM     + RQ+ C +T 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDQQHGDNPMPVFSFMGSADQHPRQVPCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S + +     R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRYSAEKEGWAPGRSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF + ++     R  L+S  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGREMGLVDDARWARFNEKLENIERERQRLRSTWVT 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
               S   I+        +  +  + L  P+ +   L ++   A     +   E+++I+ 
Sbjct: 487 PSTASVEEINTVLTAPLSREASGEDLLRRPEMTYAQLTALSVFAPALDDVQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNESTLLPATLDYRQVNGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|238765116|ref|ZP_04626050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia kristensenii ATCC 33638]
 gi|238696668|gb|EEP89451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia kristensenii ATCC 33638]
          Length = 629

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/615 (47%), Positives = 396/615 (64%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNADQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N++  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PHSENVAEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYQGYIARQQEEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVWLKK 621


>gi|330964187|gb|EGH64447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 630

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 388/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIIIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 487 PGTEQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCTD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|330881914|gb|EGH16063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 630

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/620 (46%), Positives = 394/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L +I    C D +     V E+
Sbjct: 487 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCTDPQ-----VAEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 540 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 600 SRIPGVTPAAISLLMIHLKK 619


>gi|261823729|ref|YP_003261835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium wasabiae WPP163]
 gi|261607742|gb|ACX90228.1| glucose inhibited division protein A [Pectobacterium wasabiae
           WPP163]
          Length = 629

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 393/619 (63%), Gaps = 13/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKHVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDERWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +        +L  T +S + +G+       + Y   +   LFS      + +    E++
Sbjct: 487 PQSEQLDQINSLLKTPLSREANGEELLRRPEVDYLQLTALPLFSPGLADEQAA----EQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 543 EIQVKYEGYIARQQDEIEKQLRNENALLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+++LLI++KK
Sbjct: 603 RISGITPAAISILLIWLKK 621


>gi|255020230|ref|ZP_05292299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970372|gb|EET27865.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 624

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 302/621 (48%), Positives = 410/621 (66%), Gaps = 3/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD+IV+GGGHAG EAAA  A+LGAST L+T    TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MAQQYDLIVVGGGHAGVEAAAAGARLGASTLLLTQNLDTIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR  DAAGIQFR LN +KGPAV+  R QADR  YR A+++ + +   L + Q
Sbjct: 61  IDALDGLMGRAIDAAGIQFRTLNRRKGPAVQATRAQADRVRYRQAIRQLLEALPQLHLFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G VA        ++ + +++   I    VVLTTGTFL G I+IG  +  AGR GD P+N+
Sbjct: 121 GTVADLLLRGGRVAGVQLENGIEIGAGAVVLTTGTFLGGQIYIGDRRTAAGRAGDPPANA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       +F  GRLKTGTP R+DG++I +   E Q  D    PFSF+  ++   Q+ C 
Sbjct: 181 LAQRLRAMEFPVGRLKTGTPPRIDGRSIDYRHLEPQPGDTPPRPFSFLNRRVVLGQLPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I  N++ SA++ G I++ GPRYCPSIEDKIVRF ++  HQIFLEPEGL+
Sbjct: 241 ITHTNRRTHEVIAANLQRSALFGGFIQATGPRYCPSIEDKIVRFADKESHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP  +Q + + TIPGLE   ++RPGYAIEYDY++P++L  +L+++++ 
Sbjct: 301 TQEVYPNGISTSLPFAVQEELVHTIPGLEAAILLRPGYAIEYDYLDPRDLDHSLQSRRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+ R     +  C +R ++Y+GV++DDL S+GV 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLLAGINAVRSLRGEETWCPARHEAYMGVLVDDLVSRGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTPIG  LG +G+ R + F +   +    R  L  L
Sbjct: 421 EPYRMFTSRAEYRLQLREDNADRRLTPIGRGLGLVGDERWRHFEEKQAQLERERERLAGL 480

Query: 482 VLTSKNLSSTSISFKQD-GKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +      +  +      G+ R  +A E L  P++    +  +        + V E L+I
Sbjct: 481 RVRLDAQMAQGVGMDTSAGEPRDLSALELLRRPEWDYAAVVRLVGGEGDLPAAVAEHLEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ YA Y  RQ  E +         IP+D DY  L +LS E++++L   +P  + +AS+I
Sbjct: 541 ETKYAGYIQRQAEEIERAARWAHASIPEDLDYGHLHSLSFEVRQRLQRQRPRTVGEASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+TPAA++LLLI++K+  ++
Sbjct: 601 PGVTPAAISLLLIHVKRRQLQ 621


>gi|66048356|ref|YP_238197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae B728a]
 gi|63259063|gb|AAY40159.1| Glucose-inhibited division protein A subfamily [Pseudomonas
           syringae pv. syringae B728a]
 gi|330970319|gb|EGH70385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 630

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVDQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCIKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCTDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|330898614|gb|EGH30033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 630

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRSQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCIDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|149375653|ref|ZP_01893422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter algicola DG893]
 gi|149360055|gb|EDM48510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter algicola DG893]
          Length = 628

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/615 (47%), Positives = 405/615 (65%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMAMATDKAGIQFRVLNSRKGPAVRATRAQADRVLYKAAI-REILENQPNLTLFQQAA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   I+ +V Q     R  TVVLTTGTFL GVIHIG  +   GR GD+P+N+L  
Sbjct: 126 DDLIVDGERITGVVTQSGIRFRAPTVVLTTGTFLGGVIHIGMQQHSGGRAGDAPANALAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SF+  +  +  Q+ C +T
Sbjct: 186 RLRELPFNVGRLKTGTPPRIDARSVDFSVMQEQWGDDPAPVMSFLGSRNQHPEQVCCYVT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+
Sbjct: 246 RTTEQTHDIIRSGFDRSPMFAGNIEGIGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP +IQ   +RTIPG E  +I RPGYAIEYD++NP++L  TLETK I GL
Sbjct: 306 ELYPNGISTSLPFDIQLAAVRTIPGFENAHITRPGYAIEYDFLNPQDLRHTLETKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGL+AGIN+A ++   D     R ++Y+GV++DDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAGAQGLLAGINAALRAQDKDEWYPRRDEAYLGVLVDDLITMGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G KLG + ++R + F    +     R  L++  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTETGHKLGLVDDQRWQAFNSKREAIGAERQRLETTRI 485

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              TS   ++ S   +   + +T  E L  P+ + +++  +  +       V ++++IE 
Sbjct: 486 HPGTSGGDAANSHLRQPMNRDQTLAELLRRPEINYRHIADMA-EGHADDPAVADQVEIEI 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E + ++  E   +P D D+ ++  LSNE+K+KL  ++P  + QAS+I+G
Sbjct: 545 KYEGYISRQADEIERLRRNENTRLPDDIDFDAIGGLSNEIKQKLKEVRPETVAQASRIQG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++ +L+++KK
Sbjct: 605 VTPAAISQVLVHLKK 619


>gi|290511657|ref|ZP_06551025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. 1_1_55]
 gi|289775447|gb|EFD83447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. 1_1_55]
          Length = 629

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSVDQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  LKS  + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLKSTWVN 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +  S+  ++        +  +  + L  P+ + + L  + P A         E+++I+ 
Sbjct: 487 PQAESAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLIQLSPFAPGLEDQQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  ++P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTVLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|16762452|ref|NP_458069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29143940|ref|NP_807282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052661|ref|ZP_03345539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213427461|ref|ZP_03360211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213649867|ref|ZP_03379920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|21263667|sp|Q8Z2Q7|MNMG_SALTI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25300013|pir||AE0953 glucose inhibited division protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504757|emb|CAD03121.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139576|gb|AAO71142.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 629

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 393/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|292493915|ref|YP_003529354.1| glucose inhibited division protein A [Nitrosococcus halophilus Nc4]
 gi|291582510|gb|ADE16967.1| glucose inhibited division protein A [Nitrosococcus halophilus Nc4]
          Length = 629

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/618 (46%), Positives = 388/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIVVGGGHAGTEAALAAARQGARTLLLTHNLETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM + AD AGI FRVLN +KGPAVR  R QADR LY+  +++ +  Q +L + Q  V
Sbjct: 66  LGGLMAQAADRAGIHFRVLNARKGPAVRATRAQADRALYKAVVRKSLEQQPHLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   +  +  Q         V+LT GTFL G IH+G      GR GD P+N+L  
Sbjct: 126 ADLLVEGERVIGVKTQLGLTFYAPAVILTVGTFLGGRIHVGLTHHEGGRAGDPPANALAC 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+ + +    Q+ C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDKPVPVFSFLGSAQDHPSQVHCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II  N+  S +YSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTTPQTHEIIHANLDRSPMYSGEIEGMGPRYCPSIEDKVVRFSDKESHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   +R+IPG E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EVYPNGISTSLPFDVQEALVRSIPGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGL+AG+N+  +       C  R ++Y+GV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAGAQGLIAGLNAGLQIRDQAPWCPRRDEAYVGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTP G  LG + E R ++F    +        L    +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPKGQALGVVDETRWRQFNAKWEAIERENQRLSQQRI 485

Query: 484 TSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               ++    +       R  Y   E L  P  S + L  +  +      +V E++ I++
Sbjct: 486 GPDQVAQEEATTLLGEPLRREYRLIELLRRPQISYEKLMRLIGEPVAVDLVVAEQIAIQA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   +P D +Y  +  LS E++EKL+ ++P  L QA++I G
Sbjct: 546 KYAGYIERQQQEINRQQRHEGLRLPLDLNYHQVKGLSAEVQEKLARVRPATLGQAARIPG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLL+Y+K+  V
Sbjct: 606 VTPAAVSLLLVYLKRARV 623


>gi|307246580|ref|ZP_07528651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306852452|gb|EFM84686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 630

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/617 (48%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD  Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDTFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|238753970|ref|ZP_04615329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia ruckeri ATCC 29473]
 gi|238707722|gb|EEQ00081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia ruckeri ATCC 29473]
          Length = 629

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 395/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAIATDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D+ +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDDPVPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  +     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDDEGWFPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   ++  I++    R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHYSLKIEQIEKERQRLRDIMVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+ +   +   K    K     E L  P+   + L ++       S     ++++I+ 
Sbjct: 487 PNSEKIQEINALLKAPLSKEANGEELLRRPEIDYRMLTALDKFGPALSDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E +     E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIERQLRNENTLLPTDLDYSQVSGLSNEVTAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 VTPAAISILLVWLKKQ 622


>gi|317050169|ref|YP_004117817.1| glucose inhibited division protein A [Pantoea sp. At-9b]
 gi|316951786|gb|ADU71261.1| glucose inhibited division protein A [Pantoea sp. At-9b]
          Length = 629

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/616 (48%), Positives = 392/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH    +G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHDIDKLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDKAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                   GRLKTGTP R+D +TI + +   Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRALPLRVGRLKTGTPPRIDARTIDFSQLAPQHGDNPMPVFSFMGNVSQHPQQVPCWITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYMGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R  R+ + ++     R  L+ L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGREMGLVDDARWARYNQKLEAIEQERQRLRDLWVH 486

Query: 484 -TSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+N+    SI      K  +  + L  P+ +   L S+       +     E+++I+ 
Sbjct: 487 PKSENVDEVNSILSAPLTKEASGEDLLRRPEMTYALLTSLNSYGPVLADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQQRNENTLLPVDLDYRQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|38257761|sp|Q9F5X1|MNMG_PSEU2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|10764670|gb|AAG22815.1|AF302083_1 GidA [Pseudomonas syringae pv. syringae]
          Length = 631

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVDQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCIKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 488 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCTDPQ-----VAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 543 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 603 IPGVTPAAISLLMIHLKK 620


>gi|238759548|ref|ZP_04620710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia aldovae ATCC 35236]
 gi|238702207|gb|EEP94762.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia aldovae ATCC 35236]
          Length = 629

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 395/615 (64%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAMATDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRKLGLVNDARWAHFSQKIEKIEKERQRLRDIWVH 486

Query: 485 --SKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S N+S  +   K    K     E L  P+   + L ++       +     ++++I+ 
Sbjct: 487 PYSDNVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYITRQQEEIEKQLRNENTVLPLDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVWLKK 621


>gi|319790744|ref|YP_004152384.1| glucose inhibited division protein a [Variovorax paradoxus EPS]
 gi|315593207|gb|ADU34273.1| glucose inhibited division protein A [Variovorax paradoxus EPS]
          Length = 652

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 300/630 (47%), Positives = 395/630 (62%), Gaps = 18/630 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLSLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIAFRARTVVLTAGTFLDGRIHVGLDNYQAGRAGDPPAISLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER------LIPFSFM-TDKITNRQI 238
             +     GRLKTGTP RLDG++I + K  +Q  D        +  FSFM    +  RQ+
Sbjct: 187 LKELKLPQGRLKTGTPPRLDGRSIDFSKCTEQPGDGMPGGAGPMPVFSFMGRADMHPRQM 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQIFLEPE
Sbjct: 247 ACWITHTNARTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP +IQ+Q +R++PGLE  +I+RPGYAIEYDY +P+EL  + ET+
Sbjct: 307 GLTTNEYYPNGISTSLPFDIQYQLVRSMPGLENAHILRPGYAIEYDYFDPRELKSSFETR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQINGTTGYEEAAAQGL AGIN+A +    D     R ++Y+GV++DDL +K
Sbjct: 367 SVKGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEDAWLPRRDEAYLGVLVDDLITK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+ LR DNAD RLT  G KLG + + R   F++     +     L
Sbjct: 427 GVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRKLGLVDDARWDAFSRKRDAVSRETERL 486

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS----- 530
           KS+ +  +NL    S  +  K         + L  PD + + L S+  D  K+S+     
Sbjct: 487 KSIWVNPRNLPAAESERVLGKAIEHEYNLADLLRRPDVNYETLMSL--DGGKYSASSALS 544

Query: 531 -LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              IE+++I + Y+ Y  RQ  E +     E   +P DFDY  + ALS E+++KL   +P
Sbjct: 545 ETEIEQIEISAKYSGYIERQHDEVERAAHFENLRLPADFDYGQVKALSFEVRQKLDKHRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             L  AS+I G+TPAA++LL+I+++K   K
Sbjct: 605 ETLGLASRISGVTPAAISLLMIHLRKGGHK 634


>gi|300115603|ref|YP_003762178.1| glucose inhibited division protein A [Nitrosococcus watsonii C-113]
 gi|299541540|gb|ADJ29857.1| glucose inhibited division protein A [Nitrosococcus watsonii C-113]
          Length = 629

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/622 (47%), Positives = 402/622 (64%), Gaps = 12/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VI++GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIIVGGGHAGTEAALAAARQGVRTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM   AD AGI FR+LN +KGPAVR  R QADR LY+  +++ +  Q  L + Q  V
Sbjct: 66  LGGLMAHAADQAGIHFRMLNARKGPAVRATRVQADRALYKAVVRKALEQQPYLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  Q         VVLT GTFL G IH+G      GR GD P+N+L +
Sbjct: 126 TDLVVKGEQVVGVRTQLGLTFYAPAVVLTVGTFLGGRIHVGLTNHEGGRAGDPPANALSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+ + +   +Q+ C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDDPVPVFSFLGSAEDHPQQVSCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTNL TH II  ++  S IYSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTNLRTHEIIRASLDRSPIYSGEIEGTGPRYCPSIEDKVVRFSDKTSHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EIYPNGISTSLPFDVQVALVRSIQGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+N+  +    +     R ++YIGV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLIAGLNAGLQVQGKEPWYPRRDEAYIGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQEYNFLRSLLKS 480
           YRMFTSRAEYR+ LR DNAD RLTPIG +LG + E R +RF    K I+  N  + L++ 
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPIGRELGLVDEARWRRFNTKWKAIEREN--QRLVQQ 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +   K     +I+   +   R  Y   E L  P  S + L  +  +       V E++ 
Sbjct: 484 RIEPGKIAEGEAITLLGE-PLRREYRLIELLRRPHISYEKLMRLIGEPMVVEPAVAEQIA 542

Query: 538 IESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           I++ YA Y  RQ +E A++ + E  RL P DF+Y  +  LS E++EKL+ ++P  L QA+
Sbjct: 543 IQAKYAGYIERQQLEIARQQRHESLRL-PLDFNYYQVRGLSVEVQEKLARVQPVTLGQAA 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+K+  V
Sbjct: 602 RIPGVTPAAISLLLVYLKRARV 623


>gi|331017733|gb|EGH97789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 630

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 387/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +IS          Y     L+ P+    +L ++    C D      LV E+++
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCAD-----PLVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKIKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|325929407|ref|ZP_08190535.1| glucose-inhibited division protein A [Xanthomonas perforans 91-118]
 gi|325540182|gb|EGD11796.1| glucose-inhibited division protein A [Xanthomonas perforans 91-118]
          Length = 634

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 390/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKT 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETTRLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|307262144|ref|ZP_07543795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868121|gb|EFM99946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 630

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|289826268|ref|ZP_06545380.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 627

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/615 (47%), Positives = 393/615 (63%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 VTPAAISILLVWLKK 621


>gi|330890256|gb|EGH22917.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 630

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 394/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L ++    C D +     V E+
Sbjct: 487 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCTDPQ-----VAEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 540 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 600 SRIPGVTPAAISLLMIHLKK 619


>gi|289628220|ref|ZP_06461174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870069|gb|EGH04778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 630

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 393/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L ++    C D +     V E+
Sbjct: 487 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCTDPQ-----VAEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 540 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 600 SRIPGVTPAAISLLMIHLKK 619


>gi|289649110|ref|ZP_06480453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 631

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 393/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L ++    C D +     V E+
Sbjct: 488 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCTDPQ-----VAEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 541 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 601 SRIPGVTPAAISLLMIHLKK 620


>gi|332995871|gb|AEF05926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas sp. SN2]
          Length = 633

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/618 (46%), Positives = 400/618 (64%), Gaps = 5/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIV+GGGHAG EAA  AA++G++T L+TH   TIG MSCNPAIGG+GKGHLV+EID
Sbjct: 5   QAFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG  AD  GIQFR LN  KGPAVR  R QADR LYR A+++ + SQENL + Q  
Sbjct: 65  ALGGAMGLAADQGGIQFRTLNSSKGPAVRATRAQADRTLYRQAIRKIVESQENLTLFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++ +V Q     +  TVVLT GTFL G IHIG      GR GD PS +L 
Sbjct: 125 VDDLVVENDQVTGVVTQMGLKFKAKTVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +      F   RLKTGTPARLD +++ +   + Q  D     FSFM ++ +  +QI C I
Sbjct: 185 DRLRALPFRVDRLKTGTPARLDARSLDFSVMQAQPGDNPTPVFSFMGNREMHPQQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLN+
Sbjct: 245 THTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKDSHQIFVEPEGLNS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP +IQ   +R+I G E  +I+RPGYAIEYD+ +P++L  TLE K I G
Sbjct: 305 IEVYPNGISTSLPFDIQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLENKFIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N++ ++ + D +   R  +Y+GV+IDDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLIAGANASLQAQEKDPLILRRDQAYMGVLIDDLATMGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R   F   ++        L+   
Sbjct: 425 PYRMFTSRAEYRLLLREDNADSRLTALGREIGLVDDARWAAFNTKMEAVEGELQRLRGQW 484

Query: 483 LTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQI 538
           +   + ++ +++        K  +  E +  P+ + + L  I       +  +  E+++I
Sbjct: 485 VHKDHGATPALNTLLKTPVSKEHSLEELIRRPEMTYRQLMDIESIGPGLADPIAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  RQM E  + +  E  L+P D D++ +  LSNE+  KL+  +P  + +AS+I
Sbjct: 545 QIKYAGYIARQMDEIAKTQRHENSLLPVDLDFTKISGLSNEVVAKLTEARPETIGKASRI 604

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+TPAA++LLL+Y+KK+
Sbjct: 605 SGITPAAISLLLVYLKKH 622


>gi|317494634|ref|ZP_07953046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917236|gb|EFV38583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 629

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/615 (46%), Positives = 389/615 (63%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD P+ +L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +     Q+ D     FSFM +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAPQYGDNPSPVFSFMGNASQHPEQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMEGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANEDEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R   F + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGLVDDVRWTHFNQKLENIERERQRLREIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             S+ ++  +   K    +     + L  P+     L  + P A         E+++I+ 
Sbjct: 487 PNSEQVAELNTLLKAPLSREANGEDLLRRPEIDYTKLTQLAPFAPALDDEKAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKHLRNENTLLPADLDYSLVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LLI++KK
Sbjct: 607 ITPAAISILLIWLKK 621


>gi|330976396|gb|EGH76453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 630

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCIDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|307257737|ref|ZP_07539494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306863643|gb|EFM95569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 630

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRIDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|330937306|gb|EGH41314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 630

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/618 (47%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDIWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L SI    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCIDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|319788554|ref|YP_004148029.1| glucose inhibited division protein A [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467066|gb|ADV28798.1| glucose inhibited division protein A [Pseudoxanthomonas suwonensis
           11-1]
          Length = 628

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 388/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVIGGGHAGTEAALASARAGAGTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 67  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRGLYRSAIRRMVENQTNLTVFQAAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   + Q         VVLT GTFL G +HIG     AGRMGD PS +L   
Sbjct: 127 DLVIEGDAVRGAITQTGLRFEAPAVVLTAGTFLAGKVHIGPTTYAAGRMGDPPSTTLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +  F   RLKTGTP R+DG+++ +   E+Q  D+ L   SF+   +   RQ+ C IT 
Sbjct: 187 LRERPFAIDRLKTGTPPRIDGRSLDYAAMEEQPGDDPLPVMSFLGRVEHHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL+   
Sbjct: 247 TTARTHEIIRGALDRSPLYTGQIEGIGPRYCPSIEDKVVRFAEKESHQIFVEPEGLDVAE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G    +I RPGYAIEYD+ +P+ L PTLET+ +SGLF
Sbjct: 307 IYPNGISTSLPFDVQLELVRSIRGFGNAHITRPGYAIEYDFFDPRGLKPTLETRLVSGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+AR    L+     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAARHVRGLEGWSPRRDEAYLGVLVDDLITHGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF    +      + L++L  T
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTETGRQLGLVDDARWTRFCDKREAIERETARLRALWAT 486

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
             N     +         +   A + L  P+     L  +         + V E++QI  
Sbjct: 487 PANAVGREVEQVLGVAVSRETNALDLLKRPELDYAALMRVPALGPAVEDAQVAEQVQIGV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E +  +  E   IP+DFDY+++  LS E+++KL  ++P ++ QA +I G
Sbjct: 547 KYAGYLDRQREEIERQRRHESTPIPQDFDYAAVRGLSAEVQQKLERVRPLSIGQAQRIPG 606

Query: 601 MTPAALNLLLIYIKKN 616
           MTPAA++LLL+++++ 
Sbjct: 607 MTPAAISLLLVHLERQ 622


>gi|298489532|ref|ZP_07007541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298155959|gb|EFH97070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 630

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 394/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTRE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L ++    C D +     V E+
Sbjct: 487 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCTDPQ-----VAEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 540 VEIKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 600 SRIPGVTPAAISLLMIHLKK 619


>gi|39998553|ref|NP_954504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter sulfurreducens PCA]
 gi|81170544|sp|Q746Q4|MNMG_GEOSL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39985500|gb|AAR36854.1| glucose inhibited division protein A [Geobacter sulfurreducens PCA]
 gi|298507495|gb|ADI86218.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-
           formylglycinetransferase/reductase [Geobacter
           sulfurreducens KN400]
          Length = 627

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/621 (48%), Positives = 394/621 (63%), Gaps = 9/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIV G GHAGCEAA  AA++G  T L+T     I  MSCNPAIGGL KGHLV+EI
Sbjct: 7   EKQYDVIVAGAGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGLAKGHLVKEI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA GIQ+R+LN +KGPAVR  R QAD++LYRL M+  +  QE+L + QG
Sbjct: 67  DALGGEMGKNIDATGIQYRILNTRKGPAVRASRAQADKQLYRLRMKHVMEEQEHLSLKQG 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV G   E   +  +V +        TV+LTTGTF+RG+IH+G    P GR GD PS  L
Sbjct: 127 EVTGLVVEDGRVRGVVTKVGVRFLGKTVILTTGTFMRGLIHVGLTNYPGGRAGDLPSVGL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +      F  GRLKTGTPARLDG TI + + E Q+ D+  +PFSF T++I   Q+ C I
Sbjct: 187 SDQLRDLGFTVGRLKTGTPARLDGNTIDFSRLEPQYGDDPPVPFSFSTERIDRPQLPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  TH II   +  S +YSG I+  GPRYCPSIEDK++RF +++ HQ FLEPEG +T
Sbjct: 247 AYTNERTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVMRFPDKDRHQSFLEPEGRDT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YP+G+ST+LP +IQ++  R+I GLE V I+RP YAIEYDY++P +L  +LETK I  
Sbjct: 307 VEYYPSGLSTSLPIDIQYRLYRSIEGLENVEIMRPAYAIEYDYVDPIQLHTSLETKLIRN 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A +    + +   R ++YIGVMIDDL + G  E
Sbjct: 367 LYHAGQINGTSGYEEAAGQGLMAGINAALRVQGEEPLVLGRDEAYIGVMIDDLVTLGTRE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL   G  +G +   R + +  ++++   + + L+ L 
Sbjct: 427 PYRMFTSRAEYRLLLREDNADLRLRERGHAVGLV---RDEEYRLFLEKRERIGAELERLR 483

Query: 483 LTSKNLSSTSISFKQD-GKT--RTAYEF---LSYPDFSIQNLFSICPDARKFSSLVIERL 536
                 S    SF +  G T  R A  F   L  PD + + L  I P A      V E++
Sbjct: 484 TAKLLPSEADPSFLETYGMTDLRNALTFEQLLRRPDITYEELSQIDPVAGMVPPSVKEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ +    +  E   IP D DY+ +P LS E++EKL    P  L QAS
Sbjct: 544 EIQIKYQGYIERQLDQVARARKLEGTRIPDDLDYTVIPGLSAEVREKLLRFLPDTLGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I+G+TPAA+ +L + IK  +
Sbjct: 604 RIQGVTPAAVGILSVAIKSRS 624


>gi|190150986|ref|YP_001969511.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307264343|ref|ZP_07545931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|238692408|sp|B3H2Q2|MNMG_ACTP7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189916117|gb|ACE62369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870295|gb|EFN02051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 630

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/617 (48%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   YDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV 
Sbjct: 67  GGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N     V +     +  +VVLT GTFL G IHIG      GR GD  +  L + 
Sbjct: 127 DILVENNRAVGAVTKMRLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
               +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI C IT 
Sbjct: 187 LRDLNLRIDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  
Sbjct: 247 TNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I GLF
Sbjct: 307 VYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK + + 
Sbjct: 427 RVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLKQIWIH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
             S++L+  +        TR A   + L  P+ +   L  +   A         E+++I 
Sbjct: 487 PQSEHLAVVN-ELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQVEIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LL+ +KK 
Sbjct: 606 GITPAAISILLVNLKKQ 622


>gi|71734446|ref|YP_277291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|123634469|sp|Q48BF4|MNMG_PSE14 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71554999|gb|AAZ34210.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 630

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 394/620 (63%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSI----CPDARKFSSLVIER 535
                  +I+  +   T   +E+     L+ P+    +L +I    C D +     V E+
Sbjct: 487 PGTAQGDAIA--EHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCTDPQ-----VAEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ Y+ Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QA
Sbjct: 540 VEIKTKYSGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LL+I++KK
Sbjct: 600 SRIPGVTPAAISLLMIHLKK 619


>gi|294667216|ref|ZP_06732437.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602997|gb|EFF46427.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 634

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 391/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGREMGLVDDARWARFAAKQEAVQRETARLA 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVANVLGVTVSRETNVLDLIKRPELNYATLMRVPALGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|71909712|ref|YP_287299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dechloromonas aromatica RCB]
 gi|123626245|sp|Q478A2|MNMG_DECAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71849333|gb|AAZ48829.1| Glucose-inhibited division protein A subfamily [Dechloromonas
           aromatica RCB]
          Length = 628

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/620 (48%), Positives = 401/620 (64%), Gaps = 9/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA+T L+TH   T+G+MSCNP+IGG+GKGHLVRE+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARAGANTLLLTHNLDTLGAMSCNPSIGGIGKGHLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL +      
Sbjct: 67  GGAMAAATDEAGIQFRILNASKGPAVRATRAQADRVLYKQAIRTRLENQPNLTIFAEACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q         VVLT GTFL G IH+G      GRMGD PS SL + 
Sbjct: 127 DLIVEGDKVCGAVTQLGIRFMAEAVVLTAGTFLNGKIHVGLENYTGGRMGDPPSVSLASR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLDGKTI +   E+Q +D+ L  FSF+ +   + +Q+ C IT 
Sbjct: 187 LKELKLPQGRLKTGTPPRLDGKTIDFSVMEEQHSDDPLPVFSFLGNAAQHPKQLPCWITE 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++N H +FLEPEGL T  
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKNQHNVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG+ST+LP +IQ   +R+I G+E  +I+RPGYAIEYD+ +P+ L  TLETK I GLF
Sbjct: 307 IYPNGVSTSLPFDIQLALVRSIRGMENCHILRPGYAIEYDFYDPRGLKDTLETKAIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+ R        C  R ++Y+GV++DDL ++GV +PY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAVRYVRGQSGWCPKRNEAYLGVLVDDLITRGVSDPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F +        +  LKS  + 
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTEQGRELGLVDDVRWTAFCQKRDAIAAEQERLKSTWVN 486

Query: 485 SKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDARKFSS--LVIERLQI 538
            K ++      +  GK        +E L  P+ +  +L ++ P A +  +  LV+E+L+I
Sbjct: 487 PK-ITPADDCIRVLGKAIDHEYNLFELLRRPEVTYTSLLTL-PGAGEAQTDPLVVEQLEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  RQ  E  +    E  ++P + DYSS+  LSNE+++KL+  KP  + QAS+I
Sbjct: 545 SAKYQGYIDRQAEEVAKSSSYENTVLPSELDYSSVAGLSNEVRQKLAQHKPQTIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
           +G+TPAA++LLLI++K++ +
Sbjct: 605 QGITPAAISLLLIHLKRHNL 624


>gi|294627584|ref|ZP_06706167.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598215|gb|EFF42369.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 634

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 391/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGREMGLVDDARWARFAAKQEAVQRETARLA 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVANVLGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEIRVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|296122782|ref|YP_003630560.1| glucose inhibited division protein A [Planctomyces limnophilus DSM
           3776]
 gi|296015122|gb|ADG68361.1| glucose inhibited division protein A [Planctomyces limnophilus DSM
           3776]
          Length = 623

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/622 (46%), Positives = 398/622 (63%), Gaps = 23/622 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+VIG GHAGCEAA  AA+LGA TAL+T    T+G MSCNPAIGG+ KG +VR
Sbjct: 11  MSTYDFDVLVIGAGHAGCEAALAAARLGARTALLTMNCDTVGQMSCNPAIGGVAKGQIVR 70

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+V DA G+QFR+LN  KGPA+  PR QAD++LY+  M+R I  Q +L + 
Sbjct: 71  EIDALGGEMGKVIDANGLQFRMLNRSKGPAMHSPRAQADKKLYQFDMKRRIEEQPHLTLR 130

Query: 121 QGEVAGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           Q        E     +  ++ ++++  ++ R   VVLTTGTFL+ ++H G+ K P GR G
Sbjct: 131 QETTERLLVEHVPGNRPQLTGVLVRGGAIYRARAVVLTTGTFLQAIMHTGEAKTPGGRAG 190

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           D  + +L +S  +  F   R KTGTPARL+G+TI +   ++Q  D+   PFSFMT K+  
Sbjct: 191 DGTTGTLSDSLRELGFQLERFKTGTPARLNGRTIDYSVMQEQPGDDAPQPFSFMTTKLHQ 250

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C +T TN   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF +++ H IFL
Sbjct: 251 QQLSCWLTETNESVHEVIRANLHRAPMYSGQINSRGPRYCPSIEDKVVRFADKSSHHIFL 310

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  +Y NGIST+LP ++Q Q I ++ GLEK  I+R GYA+EYDY  P +L P+L
Sbjct: 311 EPEGYNTREIYCNGISTSLPRDVQDQMIHSVKGLEKAEIMRYGYAVEYDYAPPTQLLPSL 370

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GL+ AGQINGTTGYEEAA QGL+AGIN+A      + +   R+++Y+GV+ DDL
Sbjct: 371 ETKSVKGLYFAGQINGTTGYEEAAGQGLLAGINAALALQSREPLILDRSEAYLGVLTDDL 430

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G  +G + + R   F +Y Q+    R
Sbjct: 431 VTKGVDEPYRMFTSRAEFRLVLRHDNADLRLTAKGRDVGLVDQERWTAFEQYTQDLQAGR 490

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--DARKFSSLVI 533
            LL                 K+  +  T  E L  P+ + Q L  + P   A+  S+   
Sbjct: 491 QLL----------------CKERFEGATLEEILRRPETTWQTLKELSPVVAAQAISTRAA 534

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+L+IE+ YA Y  RQ  + ++        IP  FDY ++  L  E KEKLS ++P +L 
Sbjct: 535 EQLEIETKYAGYIRRQDSDIEKASKLSNVRIPTAFDYHAIQHLRKEAKEKLSRIQPADLG 594

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA +I G+TPA L+++L++IK+
Sbjct: 595 QAGRISGITPADLSIVLLHIKE 616


>gi|310765906|gb|ADP10856.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia sp. Ejp617]
          Length = 629

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 386/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +     Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAATQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D ++I +     Q  D  L  FSFM D +   +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARSIDFSLLAPQHGDNPLPVFSFMGDVRQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTAAGRELGLVDDARWARFNEKLESIERERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVADVNSVISAALTKEASGEDLLRRPEMTYQQLMTLSHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E   +P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTALPVDLDYQQVSGLSNEAIAKLNESKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|78045947|ref|YP_362122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|123586143|sp|Q3BYP1|MNMG_XANC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78034377|emb|CAJ22022.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 634

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 390/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EID L
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDGL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETTRLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVAGALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP+ FDY+S+  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYASVRGLSIEVQQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|58696842|ref|ZP_00372364.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536952|gb|EAL60118.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 603

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/600 (48%), Positives = 380/600 (63%), Gaps = 25/600 (4%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G AV GPR QADR+LY
Sbjct: 1   MSCNPAIGGVAKGVVVREVDALDGIMGRAIDRASIHSVILNSSRGAAVWGPRAQADRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFL 158
           + A+Q  IL+  NL V +  V  F  E N      I +++      I    VVLTTGTFL
Sbjct: 61  KQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEHILTGKVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           +GVIHIG+   P+GRMGD P+  L N+  K+DF  GRL+TGTP RLD  TI W   ++Q 
Sbjct: 121 QGVIHIGEQTTPSGRMGDKPAVELANTLNKYDFRLGRLRTGTPPRLDRGTINWSILQEQV 180

Query: 219 ADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-YSGDIKSYGPRYCPS 277
            D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y  D+    PRYCPS
Sbjct: 181 GDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSYLSDV--VAPRYCPS 238

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q + I++I GLE   I+RP
Sbjct: 239 IEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQREMIKSIKGLENAEILRP 298

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKL 396
           GYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA QG++AGIN+A  +  K 
Sbjct: 299 GYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGIIAGINAALSAFEKK 358

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     RTDSYIGVMIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +
Sbjct: 359 ESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLV 418

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQ 516
              R       ++    L   L SL +T + L S  I    DG  +TA + LSYP+    
Sbjct: 419 SHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWN 478

Query: 517 NLFSICPDARKFSSL----------------VIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            L  I P+    +                  + E ++IE+ Y  Y  RQ  + K ++ E 
Sbjct: 479 KLQEIWPELSSVTRWNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEI 538

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
              IP DF+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 539 NTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 598


>gi|157373139|ref|YP_001481128.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Serratia proteamaculans 568]
 gi|205375714|sp|A8GLL0|MNMG_SERP5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157324903|gb|ABV44000.1| glucose inhibited division protein A [Serratia proteamaculans 568]
          Length = 629

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/617 (47%), Positives = 395/617 (64%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D ++I +     Q  D  +  FSFM +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARSIDFSVLAPQHGDTPIPVFSFMGNAGQHPEQMACYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G++   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMEGMQNARIIRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYANEDEGWSPRRDQAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF++ ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFSEKLEHIEQERQRLRDIWM 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIE 539
              ++N+   +   K    +     E L  P+     L S+   A   + +   E+++I+
Sbjct: 486 HPHAENVEQVNALLKAPLSREANGEELLRRPEMDYTQLTSVAAFAPPLADTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQQRNENTVLPLDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++LLI++KK 
Sbjct: 606 GITPAAISILLIWLKKQ 622


>gi|289677542|ref|ZP_06498432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae FF5]
          Length = 631

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/619 (47%), Positives = 392/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +Q NL + Q   
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAI-REILENQPNLWIFQQAC 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L  
Sbjct: 127 DDLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +  Q+ C IT
Sbjct: 187 RLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T 
Sbjct: 247 HTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 307 ELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 367 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  +
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWV 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERL 536
                   +I+          Y     L+ P+    +L SI    C D +     V E++
Sbjct: 487 RPGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCIDPQ-----VAEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS
Sbjct: 542 EIKTKYAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LL+I++KK
Sbjct: 602 RIPGVTPAAISLLMIHLKK 620


>gi|221135171|ref|ZP_03561474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Glaciecola sp. HTCC2999]
          Length = 629

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 296/620 (47%), Positives = 396/620 (63%), Gaps = 7/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   SYDVIVVGGGHAGTEAALAAARMGVKTLLLTHNMETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR LN  KGPAVR  R QADR LYR A+++ +  Q+NL + Q   
Sbjct: 66  LGGTMAHAIDHAGIQFRTLNSSKGPAVRATRAQADRNLYRNAVRKSLEHQQNLTIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V Q     +  TVV+T GTFL G IHIG      GR GD PS +L  
Sbjct: 126 DDIIVENNRVTGVVTQMGLKFKAKTVVITVGTFLGGTIHIGMENYKGGRAGDPPSIALAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
                 F   RLKTGTPARLD +T+ ++  + Q  D  L  FSFM  K+    RQI C I
Sbjct: 186 RLRALPFRVDRLKTGTPARLDARTLNYEVMQAQPGDTPLPVFSFM-GKVEQHPRQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL++
Sbjct: 245 THTNERTHEIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGLDS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G E  +IIRPGYAIEYD+ +P++L  +LETK I G
Sbjct: 305 IEIYPNGISTSLPFDVQFDLVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQSLETKFIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N+A ++     I   R  +YIGV+IDDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLIAGANAALQTQDKAPISLRRDQAYIGVLIDDLATMGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   F + +      +  LK+  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADMRLTPLGREVGLVDDARWAAFNEKLDLIEQEKQRLKAHY 484

Query: 483 LTSKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQI 538
           +  ++ ++ +++   K    +  T  E +  P+ + + L  I         +   E+++I
Sbjct: 485 VHPEHSATPALNPLLKNPVSREHTFEELIRRPEMTYKKLMEIEGIGPGLEHVQAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  RQ  E  + +  E+ L+P  FDYS +  LSNE+  KL+  +P  + +AS+I
Sbjct: 545 QIKYAGYIERQKEEIAKTQRHEETLLPPTFDYSQISGLSNEVVAKLTESRPETIGKASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++LLL+Y+KK+ +
Sbjct: 605 SGITPAAISLLLVYLKKHNM 624


>gi|241762351|ref|ZP_04760431.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373145|gb|EER62784.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 621

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/614 (47%), Positives = 405/614 (65%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVREIDA 
Sbjct: 11  FDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVREIDAW 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+Q  +  Q +L +I+G   
Sbjct: 71  DGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQTALKEQAHLTIIEGMAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS  L   
Sbjct: 131 SFQMDKGKVKAVLLADGRSLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSIGLAEQ 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF-SFMTDKITNRQIECGITR 244
               D   GRLKTGTPARLDG+TI W + ++Q +DE      S+ T ++   QI C +TR
Sbjct: 191 LKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGTGRVAP-QIACSLTR 249

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+T +
Sbjct: 250 SNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGLDTPL 309

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K + G+F
Sbjct: 310 IYPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKALKGVF 369

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGV+IDDL  +GV EPY
Sbjct: 370 CAGQINGTTGYEEAAAQGLVAGISAACAVAGKAPPVFDRRNSYIGVIIDDLVLQGVTEPY 429

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+    +
Sbjct: 430 RMLTARAEYRLGLRADNAVTRLSGQAKAFGALGTEMTDFVTKRLAEREKCQKLLEK-AAS 488

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           S+++ +   +  + G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  +  YA 
Sbjct: 489 SRDMQAVGANVTE-GASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDGRYAP 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E   +   +   +P + DY+++  LSNE+ EK S  +P ++  AS++ G+TPA
Sbjct: 548 YLERQDAELARLAGHDNMPLPAELDYATIAGLSNEMVEKFSAARPPDMASASRVRGVTPA 607

Query: 605 ALNLLLIYIKKNTV 618
           AL  +LI+ KK T+
Sbjct: 608 ALAAILIHAKKVTL 621


>gi|114778889|ref|ZP_01453686.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
 gi|114550858|gb|EAU53424.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
          Length = 624

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/617 (46%), Positives = 390/617 (63%), Gaps = 9/617 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +VIV+G GHAGCEAA  AA  GAS  LIT    TI  MSCNPAIGG+GKGHLV E+DAL 
Sbjct: 11  NVIVVGAGHAGCEAAWAAASRGASVRLITQNLDTIAKMSCNPAIGGIGKGHLVHEVDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GLMG  AD + +Q+R+LN +KGPAV+  R Q DR  Y + M+  + S   + + QG ++ 
Sbjct: 71  GLMGVAADRSALQYRLLNSRKGPAVQATRAQCDRRTYHIVMRELLDSNPMIHLHQGSISE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + + +S ++ +       S VVLTTGTFL GV ++G     AGR GD+  N L    
Sbjct: 131 LLFDGDRVSGVLDELGVRHEASAVVLTTGTFLGGVTYVGDKSSSAGRSGDAAVNGLTEEL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            K +F  GRLKTGTP RLD KTI WD+ EKQ  D  + PFS + +++  RQ++C ITRT 
Sbjct: 191 YKREFKVGRLKTGTPPRLDKKTIRWDQLEKQPGDLNVRPFSVLHEEVVRRQLDCAITRTT 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II EN+  S +Y+G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG + + VY
Sbjct: 251 EKTHDIIRENLSRSPMYTGLIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGWDHNEVY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q  F+R+IPGLE VNIIRPGYA+EYDY++P EL P+LETK+++GLF A
Sbjct: 311 PNGISTSLPIDVQWAFMRSIPGLEGVNIIRPGYAVEYDYVDPTELRPSLETKRVAGLFHA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ+NGTTGYEEAAAQG++AGIN+A  +  L      R+ +YIGVM+DDL SKGV+EPYRM
Sbjct: 371 GQLNGTTGYEEAAAQGVLAGINAASVALGLPAWVPDRSQAYIGVMVDDLVSKGVMEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAE+R+ LR DNAD RL P  + LG   E R+  F    Q  N    L ++   T  
Sbjct: 431 FTSRAEFRLHLREDNADLRLGPSSVTLGLYSEARRCSFQSRQQRVN---DLFEAACATCV 487

Query: 487 NLSS------TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            +        +++     G++     +    D        +        +  +  L    
Sbjct: 488 GIGEAWRGRLSALGLPVPGQSMMLPAYCHRDDVDPAVAMQLLEGYEVLGAHDVASLGSLL 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +  K  E + +P  FDYS +P LS E  ++LS ++P  L QAS++ G
Sbjct: 548 HYHGYLDKQLQDIERFKQMESQSLPDGFDYSIVPGLSIECAQRLSSVQPMTLGQASRLSG 607

Query: 601 MTPAALNLLLIYIKKNT 617
           +TPAA+  L+++++  +
Sbjct: 608 VTPAAVTSLVMFLRGTS 624


>gi|270264085|ref|ZP_06192352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Serratia odorifera 4Rx13]
 gi|270041734|gb|EFA14831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Serratia odorifera 4Rx13]
          Length = 629

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI +     Q  D  +  FSFM +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSVLAPQHGDTPIPVFSFMGNANQHPEQMACYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYANEDEGWSPRRDQAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF++ ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFSEKLEHIEQERQRLRDIWM 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              ++N+   +   K    +     E L  P+     L ++   A     +   E+++I+
Sbjct: 486 HPHAENVEQVNALLKAPLSREANGEELLRRPEMDYALLTTVAAFAPPLVDTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQQRNENTVLPLDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA+++LLI++KK
Sbjct: 606 GITPAAISILLIWLKK 621


>gi|93005980|ref|YP_580417.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter cryohalolentis K5]
 gi|122415453|sp|Q1QBM0|MNMG_PSYCK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|92393658|gb|ABE74933.1| glucose inhibited division protein A [Psychrobacter cryohalolentis
           K5]
          Length = 632

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 391/616 (63%), Gaps = 11/616 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KNYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E    +++V     +    TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 125 ADDILVENGRATAVVTATGIIFNTQTVVLTSGTFLGGVIHIGLESSKGGRAGDQPSIKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +++ +     Q  D  L   S+M D  +   Q+ C I
Sbjct: 185 DRLRELKLPVGRLKTGTPARIDARSVDFSVMTVQPGDTPLPVMSYMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 245 THTNARTHDIIRENLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDR 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSAR---KSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG N+A    ++N+ D     R ++Y+GV++DDL + G
Sbjct: 365 LYFAGQINGTTGYEEAGVQGLLAGTNAALVTCENNEFDVWTPRRDEAYLGVLVDDLITHG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++      + LK
Sbjct: 425 TTEPYRMFTSRAEYRLLLREDNADQRLTETGRKLGLVDDVRWQAYEEKMEAIASETARLK 484

Query: 480 SLVLTSKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            +  T  N     ++ +Q G    K  TA++ L  P     ++ +I     +  + V E+
Sbjct: 485 DMWATPANALGKKVT-EQTGEVLSKEATAFDLLKRPQIHFADIAAITDS--QVDAQVGEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +  ++K  E   +P DFDYS +  LSNE+ +KL+ ++P  L QA
Sbjct: 542 IEISVKYAGYIDRQQEDIDQMKRLENTALPIDFDYSVVSGLSNEIVQKLAQVRPSTLAQA 601

Query: 596 SKIEGMTPAALNLLLI 611
            +I G+TPAA+ LL +
Sbjct: 602 GRISGVTPAAIQLLAM 617


>gi|161505600|ref|YP_001572712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189039354|sp|A9MJQ9|MNMG_SALAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160866947|gb|ABX23570.1| hypothetical protein SARI_03776 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 629

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 295/622 (47%), Positives = 391/622 (62%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAAAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFSDRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRDLGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFKQD---------GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
                  S  F  D          +  +  + L  P+ +   L S+   A         E
Sbjct: 487 P------SAEFAADVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLSAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRLVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK 
Sbjct: 601 ASRISGVTPAAISILLVWLKKQ 622


>gi|88860625|ref|ZP_01135262.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas tunicata D2]
 gi|88817220|gb|EAR27038.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas tunicata D2]
          Length = 629

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/621 (47%), Positives = 395/621 (63%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHEHFDVIVVGGGHAGTEAALASARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR+LY+ A+Q+ + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRKLYKEAIQQTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDHVVGVVTQMGLRFSSRSVVLTVGTFLGGQIHIGMESFSGGRAGDQPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D +T+ + K + Q  D     FSFM  +  +  QI 
Sbjct: 182 ALAKRLRELPFRVSRLKTGTPPRIDARTVDFSKMQIQPGDTPTPVFSFMGKQSDHPTQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKIMRFADKDRHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQLQIVQSITGFENAHICRPGYAIEYDFFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N+A +    D     R ++Y GV+IDDL + G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLIAGMNAALQVQGKDAWTPRRDEAYAGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   I+E       LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVNDERWAAFNIKIEEIEKEAQRLK 481

Query: 480 SLVLTSKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIER 535
            + +   +  L + +   K    +  +  E +  P+ +   L  I    +   +   +E+
Sbjct: 482 EVWIHKDHPQLEAVNNLLKAPLSREASLEELIRRPEVTYNELVKIEGLGSESTNEQALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  RQ  E  +    E  L+P D+DY+++  LSNE+  KLS ++P  + QA
Sbjct: 542 VEIQIKYAGYIARQQEEIDKQLRHEMTLLPADYDYAAVSGLSNEVVAKLSDVRPQTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA++LLL+Y+KK 
Sbjct: 602 SRISGITPAAISLLLVYLKKQ 622


>gi|237801670|ref|ZP_04590131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024529|gb|EGI04585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 630

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/618 (46%), Positives = 390/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAIATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  + +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIEQEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI----CPDARKFSSLVIERLQ 537
                  +I+          Y     L+ P+    +L +I    C D +     V E+++
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLINITGQGCIDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTRLPEDIDYAGISGLSKEIQSKLGITRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LL+I++KK
Sbjct: 602 IPGVTPAAISLLMIHLKK 619


>gi|304398008|ref|ZP_07379883.1| glucose inhibited division protein A [Pantoea sp. aB]
 gi|304354294|gb|EFM18666.1| glucose inhibited division protein A [Pantoea sp. aB]
          Length = 629

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                    RLKTGTP R+D +TI +     Q  D+ +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRALPLRVNRLKTGTPPRIDARTIDFSVLSPQHGDDPMPVFSFMGNASQHPQQVPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNEKLEAIEQERQRLRDIWVH 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            K+   T ++        K  +  + L  P+ +   L ++       +     E+++I+ 
Sbjct: 487 PKSEHVTEVNTVLSAPLTKEASGEDLLRRPELTYLKLMTLDAFGPALADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P + DY  +  LSNE+  KL+  KP ++ QA++I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTLLPVELDYRHVNGLSNEVIAKLNDHKPVSIGQATRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|308188710|ref|YP_003932841.1| glucose-inhibited division protein A [Pantoea vagans C9-1]
 gi|308059220|gb|ADO11392.1| Glucose-inhibited division protein A [Pantoea vagans C9-1]
          Length = 629

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 389/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                    RLKTGTP R+D +TI +     Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRALPLRVNRLKTGTPPRIDARTIDFSVLSPQHGDNPMPVFSFMGNASQHPQQVPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRLRDIWVH 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            K+   T ++        K  +  + L  P+ +   L ++       +     E+++I+ 
Sbjct: 487 PKSEHVTEVNTVLSAPLTKEASGEDLLRRPELTYLKLMTLDAFGPALADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P + DY  +  LSNE+  KL+  KP ++ QA++I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTLLPVELDYRQVNGLSNEVIAKLNDHKPVSIGQATRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 ITPAAISILLIYLKKQ 622


>gi|169867302|ref|XP_001840232.1| mitochondrial translation optimization protein [Coprinopsis cinerea
           okayama7#130]
 gi|116498784|gb|EAU81679.1| mitochondrial translation optimization protein [Coprinopsis cinerea
           okayama7#130]
          Length = 669

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 316/639 (49%), Positives = 407/639 (63%), Gaps = 36/639 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV +IGGGHAGCEAAA AA+ GA T L+T K  TIG +SCNP+IGG+GKG LVREIDA
Sbjct: 23  NYDVCIIGGGHAGCEAAAGAARTGARTVLLTQKLETIGELSCNPSIGGVGKGTLVREIDA 82

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MGRVAD AGIQF+VLN  KG AV GPRTQ DR LY+  MQ+ + +  NLD+  G V
Sbjct: 83  LDGVMGRVADKAGIQFQVLNRSKGAAVWGPRTQIDRTLYKQNMQKILHNYPNLDIKAGSV 142

Query: 125 AGFNTEK--------------------NIISSIVMQDN------SMIRCSTVVLTTGTFL 158
                E+                    N+     + DN       +I CS VV+ TGTFL
Sbjct: 143 FDLIIERSHTDAGWGRVQGVQLGMWLLNVTDKCQLTDNPALDSGEIISCSQVVICTGTFL 202

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
            G IH+G  +IPAGR+GD+PS  L  S     F  GRL+TGTPARLDGKTI ++  E+Q 
Sbjct: 203 SGEIHMGLKRIPAGRIGDAPSVGLSASLASAGFKLGRLQTGTPARLDGKTINFEGLERQE 262

Query: 219 ADERLIPFSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            D   +PFS+M  K+ N  RQI C  T TN  TH+I+ +N+ H  ++  + K  GPRYCP
Sbjct: 263 GDAEPLPFSYMNSKLDNADRQITCFKTYTNPSTHQIVKDNL-HQCVHIQETKK-GPRYCP 320

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           S+E KI+RFG+++ H ++LEPEG ++DV+YPNGIS +LPEE+Q   +RTIPGLEKV I+R
Sbjct: 321 SLEAKILRFGDKDHHTVWLEPEGYDSDVIYPNGISCSLPEELQEPMMRTIPGLEKVKIVR 380

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           P Y +EYDYI+P+EL PTLETK+I GLFLAGQINGTTGYEEAAAQG+VAGIN+   + + 
Sbjct: 381 PAYGVEYDYIDPRELNPTLETKRIKGLFLAGQINGTTGYEEAAAQGIVAGINAGLSALQK 440

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
             +  +R D + GVMIDDLT KG  EPYRMFTSR+EYR+++R DNAD RLT  G K G +
Sbjct: 441 PPMILTRADGFTGVMIDDLTVKGAEEPYRMFTSRSEYRMTIRSDNADLRLTTKGRKAGVV 500

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQ 516
            + R  +F       N +  LLKS+  + +  S   I   +DG  R AY  L YP  +  
Sbjct: 501 SDPRWVKFQDTQATINSVIDLLKSIKFSPQGWSERGIQVNRDGAWRDAYYMLRYPGVTAG 560

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            + S  P+       V+ R+ IE  Y  +  RQ  + K    +E  L+    +Y  +P L
Sbjct: 561 FMKSFIPELADVDPQVLARVDIEGHYHPHLSRQEADVKMFMEDESLLLDPRMEYREVPGL 620

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           S+E+ EKL          A +IEGMTP ++  LL Y K+
Sbjct: 621 SSEVVEKLY------RGAAKRIEGMTPTSVVYLLKYAKR 653


>gi|121189|sp|P25756|MNMG_PSEPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|581463|emb|CAA44419.1| unnamed protein product [Pseudomonas putida]
          Length = 630

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 387/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQNC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +I  K        Y     L+ P+     L             V E+++I +
Sbjct: 486 RPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 605 VTPAAISLLLIHLKK 619


>gi|26986749|ref|NP_742174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida KT2440]
 gi|38257497|sp|Q88RW8|MNMG_PSEPK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24981339|gb|AAN65638.1|AE016190_4 glucose-inhibited division protein A [Pseudomonas putida KT2440]
          Length = 631

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 387/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 68  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 127 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 187 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT 
Sbjct: 247 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 307 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 367 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 427 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +I  K        Y     L+ P+     L             V E+++I +
Sbjct: 487 RPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G
Sbjct: 546 KYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQASRIPG 605

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 606 VTPAAISLLLIHLKK 620


>gi|313496413|gb|ADR57779.1| MnmG [Pseudomonas putida BIRD-1]
          Length = 630

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 387/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +I  K        Y     L+ P+     L             V E+++I +
Sbjct: 486 RPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPETLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 605 VTPAAISLLLIHLKK 619


>gi|254583203|ref|XP_002499333.1| ZYRO0E09328p [Zygosaccharomyces rouxii]
 gi|238942907|emb|CAR31078.1| ZYRO0E09328p [Zygosaccharomyces rouxii]
          Length = 694

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 281/615 (45%), Positives = 401/615 (65%), Gaps = 18/615 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G GHAGCEAA  +A+ GA T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 51  VVVVGAGHAGCEAATGSARTGAPTVLITPFLNKIGTCSCNPSMGGVGKGTLLREVDALDG 110

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  +V D AGIQF++LN  +G AV GPR Q DRE+Y   MQ ++ +  NL + +G+V   
Sbjct: 111 VAAKVTDLAGIQFKMLNRSRGAAVWGPRAQIDREIYLREMQNKLNNYPNLRLWEGKVKDL 170

Query: 128 ----------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     N     +  ++++D S+++ S VV+TTGTFL   IHIG    PAGRMG+ 
Sbjct: 171 IVDIRKNQNSNYTYGAVKGVILEDGSLLKSSKVVITTGTFLSAEIHIGLETFPAGRMGEG 230

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
            +  +  +     F  GRLKTGTPARLDG+TI +   EKQ+ D+   P S + + ++ + 
Sbjct: 231 ATYGISETLEDAGFQLGRLKTGTPARLDGRTIDYTHLEKQYGDDPPHPMSLINEDVSIKD 290

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C  T TNL  H  I  N+  +      IK  GPRYCPSIE KI+RF +++ H+I+LE
Sbjct: 291 QVLCYGTYTNLGLHDYIRSNLHRAMHIRETIK--GPRYCPSIEAKILRFSDKDSHRIWLE 348

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGLNTDV+YPNGIS ++PE++Q Q +R IPGLE V I++P Y +EYDY++P++L  TLE
Sbjct: 349 PEGLNTDVIYPNGISNSMPEDVQIQMMRMIPGLENVEILQPAYGVEYDYVDPRQLRQTLE 408

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK ISGL+LAGQINGTTGYEEA AQG+VAGIN+       + +  SR+D+YIGV+IDDL 
Sbjct: 409 TKLISGLYLAGQINGTTGYEEACAQGVVAGINAGLLHMNREPLKLSRSDAYIGVLIDDLI 468

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSR+E+R+S+R DNAD RLT +G KLG +G+ R   F  Y  +Y  + S
Sbjct: 469 TKGVEEPYRMFTSRSEFRVSVRADNADFRLTELGRKLGVVGDDRWSIFQSYKNQYLNIES 528

Query: 477 LLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL 531
            LK   L+++  ++  +I      K R+A+E   +   +++ +    P    D  +    
Sbjct: 529 KLKDFNLSARKWTNLLNIQVADSAKNRSAWELFRFNGVTLEKMMEAVPELGIDINELPRH 588

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V+ ++ ++  Y+ Y  RQ    K  + +E  ++P++FDYS LP+LS E K  L+ ++P  
Sbjct: 589 VLVKVNVQGKYSPYISRQNQYVKAFQADENMVLPQNFDYSQLPSLSFECKTLLNTIQPET 648

Query: 592 LLQASKIEGMTPAAL 606
           + QA +I+G+T A+L
Sbjct: 649 IGQARRIQGITAASL 663


>gi|50593214|ref|NP_011278.2| Mto1p [Saccharomyces cerevisiae S288c]
 gi|115502421|sp|P53070|MTO1_YEAST RecName: Full=Mitochondrial translation optimization protein 1;
           Flags: Precursor
 gi|256272512|gb|EEU07492.1| Mto1p [Saccharomyces cerevisiae JAY291]
 gi|285811982|tpg|DAA07882.1| TPA: Mto1p [Saccharomyces cerevisiae S288c]
          Length = 669

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/617 (45%), Positives = 402/617 (65%), Gaps = 19/617 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+  ++   NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D   +P SF+ + ++    
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDALPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+ H +I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNL-HQSIHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+   S  + + +   R+++YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSEAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAAL 606
             + QA +I+G+T AAL
Sbjct: 638 LTIGQARRIQGITAAAL 654


>gi|161611314|ref|YP_163716.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495074|sp|Q5NL05|MNMG_ZYMMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|283775607|gb|AAV90605.2| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 621

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/613 (46%), Positives = 400/613 (65%), Gaps = 2/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVREIDA 
Sbjct: 11  FDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVREIDAW 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+Q  +  Q +L +I+G   
Sbjct: 71  DGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQTALKEQAHLTIIEGMAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS  L   
Sbjct: 131 SFQMDKGKVKAVLLADGRPLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSIGLAEQ 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
               D   GRLKTGTPARLDG+TI W + ++Q +DE     +         QI C +TR+
Sbjct: 191 LKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGAGRVAPQIACSLTRS 250

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+T ++
Sbjct: 251 NQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGLDTPLI 310

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K +  +F 
Sbjct: 311 YPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKALKSVFC 370

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGVMIDDL  +GV EPYR
Sbjct: 371 AGQINGTTGYEEAAAQGLVAGISAACAVAGKAPPVFDRRNSYIGVMIDDLVLQGVTEPYR 430

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+    +S
Sbjct: 431 MLTARAEYRLGLRADNAVTRLSGQAKAFGALGAEMTDFVTKRLAEREKCQKLLEK-AASS 489

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           +++ +   +  + G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  +  YA Y
Sbjct: 490 RDMQAVGANVTE-GASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDGRYAPY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  E   +   +   +P + DY+++  LSNE+ EK S  +P ++  AS++ G+TPAA
Sbjct: 549 LERQDAELARLAGHDNMPLPAELDYATIAGLSNEMVEKFSAARPPDMASASRVRGVTPAA 608

Query: 606 LNLLLIYIKKNTV 618
           L  +LI+ KK T+
Sbjct: 609 LAAILIHAKKVTL 621


>gi|77461958|ref|YP_351465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens Pf0-1]
 gi|123602667|sp|Q3K430|MNMG_PSEPF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77385961|gb|ABA77474.1| glucose inhibited division protein A [Pseudomonas fluorescens
           Pf0-1]
          Length = 632

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/617 (47%), Positives = 391/617 (63%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMAMATDLGGIQFRVLNSRKGPAVRATRAQADRILYKAAV-REILENQPNLWIFQQAA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQEQVRGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNFSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +     GRLKTGTP R+DGK++ +    +Q  D  +   SFM +K  + RQ+ C IT
Sbjct: 186 RLRELPLRVGRLKTGTPPRIDGKSVDFSVMTEQPGDTPIPVMSFMGNKEQHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TN  TH II  N+  S +YS  G+I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL 
Sbjct: 246 HTNARTHEIIAANLDRSPMYSAAGEIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I 
Sbjct: 306 THELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIG 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  
Sbjct: 366 GLFFAGQINGTTGYEEAGAQGLLAGANAALRAKGKEAWCPRRDEAYIGVLVDDLITLGTQ 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS 
Sbjct: 426 EPYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESIELEEQRLKST 485

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +        +I+ K        Y     LS P+     L  +     +    V E+++I
Sbjct: 486 WVRPGTQQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGLGAE-DPQVAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QAS+I
Sbjct: 545 KTKYAGYIDRQQDEIARLRASEDTKLPVDIDYTNISGLSKEIQSKLGATRPETLGQASRI 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LL+I++KK
Sbjct: 605 PGVTPAAISLLMIHLKK 621


>gi|152980753|ref|YP_001355329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Janthinobacterium sp. Marseille]
 gi|166222939|sp|A6T482|MNMG_JANMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151280830|gb|ABR89240.1| glucose inhibited division protein A [Janthinobacterium sp.
           Marseille]
          Length = 645

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/627 (47%), Positives = 400/627 (63%), Gaps = 14/627 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G ST L++H   T+G MSCNP+IGG+GKGHLV+E+DA+
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQSTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q         VVLT GTFL G IH+G     AGR GD P+ SL   
Sbjct: 127 DLLVEGDRVIGAVTQVGIKFYARAVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAISLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG++I +   ++Q  D   IP FS M    +  +Q+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPIPVFSVMGSVAMHPKQMPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNEKTHDLIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP +IQ   ++++ GLE  +I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 307 EFYPNGISTSLPFDIQLALVQSMRGLEHAHILRPGYAIEYDYFDPRGLKSTLETKVIQGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+A ++ + D     R ++Y+GVM+DDL +KGVLEP
Sbjct: 367 FFAGQINGTTGYEEAAAQGMLAGINAALQTQERDAWTPRRDEAYLGVMVDDLITKGVLEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLK 479
           YRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ +   F        +E   LRS   
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRQLGCVGDAQWAVFETKREAVARELERLRSTWV 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSS------LV 532
           S  + ++   +  +  K   +     + L  P+ S + L S+   D +  +        V
Sbjct: 487 SPRILAEA-EAERVLGKGIEREYALADLLRRPNVSYETLMSLKGVDGQDLAGPGVAEDAV 545

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E +   + E   +P++FDY  +  LS E+++KL   KP  L
Sbjct: 546 REQVEIQLKYAGYIDRQAKEVERHDYYENLKLPQEFDYMEVKGLSFEVRQKLCKHKPETL 605

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVK 619
            QAS+I G+TPAA++LLL+++KK   K
Sbjct: 606 GQASRISGVTPAAISLLLVHLKKGGFK 632


>gi|151943582|gb|EDN61892.1| mitochondrial protein [Saccharomyces cerevisiae YJM789]
 gi|190407169|gb|EDV10436.1| mitochondrial translation optimization protein [Saccharomyces
           cerevisiae RM11-1a]
 gi|207345557|gb|EDZ72335.1| YGL236Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146278|emb|CAY79535.1| Mto1p [Saccharomyces cerevisiae EC1118]
          Length = 669

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/617 (45%), Positives = 402/617 (65%), Gaps = 19/617 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+  ++   NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D+  +P SF+ + ++    
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDKLPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+ H +I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNL-HQSIHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+   S  + + +   R+ +YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSQAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAAL 606
             + QA +I+G+T AAL
Sbjct: 638 LTIGQARRIQGITAAAL 654


>gi|91795108|ref|YP_564759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella denitrificans OS217]
 gi|123165631|sp|Q12HP0|MNMG_SHEDO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91717110|gb|ABE57036.1| glucose inhibited division protein A [Shewanella denitrificans
           OS217]
          Length = 629

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/617 (47%), Positives = 389/617 (63%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + SQ NL + Q  V 
Sbjct: 67  GGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQQILQSQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +V Q        TVVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLVVENNQVVGVVTQMGLAFESPTVVLTTGTFLSGKIHIGMQNYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  +I + +  +Q  D  L   SF+ +   + RQI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANSIDFSQMTEQKGDTPLPVMSFVGNVDQHPRQISCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL+T+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKTSHQIFIEPEGLSTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKETWCPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ--EYNFLRSLLKSLV 482
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F +  +  E    R   + + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVNDDRWAKFTEKRESIELELQRLRGQWIH 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSI---CPDARKFSSLVIERLQI 538
             S  L   +           ++E  L  P+   Q L S+    P     S+   E++QI
Sbjct: 487 PNSPLLGVLNPELNTPISREASFEDLLRRPEMDYQKLMSLEGFGPGLEDPSA--AEQVQI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  KL+  KP  + QAS+I
Sbjct: 545 QVKYSGYIQRQQDEIDKAIRHENSLLPLDLDYQEVPGLSNEVIAKLNNHKPDTIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA+++LL+++KK
Sbjct: 605 SGITPAAISILLVHLKK 621


>gi|195436196|ref|XP_002066055.1| GK22159 [Drosophila willistoni]
 gi|194162140|gb|EDW77041.1| GK22159 [Drosophila willistoni]
          Length = 656

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 411/630 (65%), Gaps = 23/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI+IGGGHAG EA++ AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 29  YDVIIIGGGHAGTEASSAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ + +NL++    V 
Sbjct: 89  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQKELGNTKNLEISAAAVD 148

Query: 126 GFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               E +     +++ +   +R  +VVLTTGTFLR  I+IG    PAGR+GD P+ +L  
Sbjct: 149 NLIVEDDKHCKGVLLANGEEVRSHSVVLTTGTFLRAHINIGLEVRPAGRIGDKPAQALGE 208

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQIECG 241
           +  +  F  GRLKTGTP R+   +I + + ++   D    PFSF+  K+    + QI C 
Sbjct: 209 AIDRLGFRMGRLKTGTPPRIAKDSINFSQLQRHDGDNPPNPFSFLNKKVWLNADEQIPCY 268

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFGE+  HQ++LEPEG +
Sbjct: 269 LTYTTPKVSNIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGEKV-HQVWLEPEGFD 325

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             ++YP GIS  LP E Q + +  I GLEK  +++PGY +EYDYI+P+EL+PTLETK++S
Sbjct: 326 NPLIYPQGISCTLPFEQQIELVHAIKGLEKAEVVQPGYGVEYDYIDPRELYPTLETKRVS 385

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKS---NKLDCICFSRTDSYIGVMIDDLTSK 418
           GLF AGQINGTTGYEEAAAQG+VAG N+A K+   N    +  SRT+ YIGV+IDDLTS 
Sbjct: 386 GLFFAGQINGTTGYEEAAAQGIVAGANAAGKTLHQNDGKQLTISRTEGYIGVLIDDLTSL 445

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAE+R+SLRPDNAD RLT  G   G + E+R + F +   +       L
Sbjct: 446 GTNEPYRMFTSRAEFRLSLRPDNADMRLTRKGYDFGLVSEQRYRHFQQTFDKIQAGIEAL 505

Query: 479 KSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSIC------PDARKFS 529
           K+L   S    SS  +   +    +TA+E L  P  + +++ L  +C      PD  K S
Sbjct: 506 KNLKKHSNFWRSSLGLPTAKASVEKTAFEMLGIPADNITVEQLLQLCPGELSWPDCDKAS 565

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILK 588
           S   ER++IE+ Y+ +   Q  +  E++ EE+  IP D DY S   +LSNE ++KL++++
Sbjct: 566 S---ERIKIEALYSFFVAEQQRDVDEVRREERLAIPSDIDYFSKTLSLSNEERQKLALIQ 622

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           P  +  AS+I+G+TP+ +  L+ Y+K+  +
Sbjct: 623 PLTIAAASRIQGVTPSTIVRLMKYVKRTEI 652


>gi|87198162|ref|YP_495419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium aromaticivorans DSM 12444]
 gi|123491123|sp|Q2GC38|MNMG_NOVAD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|87133843|gb|ABD24585.1| glucose inhibited division protein A [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 619

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/614 (46%), Positives = 403/614 (65%), Gaps = 2/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAG EAAAVAA++GA TAL++    TIG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   QQFDIIVVGGGHAGVEAAAVAARMGARTALVSFDPQTIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL+ R ADA+ I +R+LN  KG AV+GPR QADR+ ++ A+Q+ I +Q +L V+ GE
Sbjct: 62  ALDGLIARAADASAIHYRMLNRSKGSAVQGPRVQADRKRFKAAIQKMIAAQPDLHVVGGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E+  ++ + + D + +    VVL TGTFL G +  G+ ++  GR+G+  ++ L 
Sbjct: 122 VAALRLEQGRVTGVDLADGTALAGRAVVLCTGTFLGGRLFRGEERMDGGRIGEDSAHRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                 +    RLKTGTP R+DG+TI W +  +Q +D+     S +T      Q+ C I 
Sbjct: 182 AQLRDAELPMARLKTGTPPRIDGRTIDWARLPEQPSDDDPWTMSPLTPARPLPQVFCAIA 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH II   +  S +++G I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+  
Sbjct: 242 RTNARTHEIIRGGLDRSPLFTGAIGAQGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLDDF 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q   IR++ GLE+  I  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 TVYPNGVSTSLPTDVQVAMIRSMEGLEQAVITVPGYAVEYDHIDPRALRRSLEVKAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+++A            R +SY+ VMIDDLT  GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLIAGMHAAAHVLGRAMPELDRANSYMAVMIDDLTLHGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA +RLTPIG+ +GCIG+ R+K F    Q  + L + L     
Sbjct: 422 YRMLTARAEYRLRLRANNAASRLTPIGLAIGCIGDERRKWFEDRSQARSRLETALAQPA- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I  + DG  R+  E+L +P+ ++  L     +   F  L++E ++ +++YA
Sbjct: 481 TPTELNRAGIPVRADGARRSLMEWLRFPEVTLDGLRDWIGN-EPFDPLLVEEVEEDAAYA 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E ++++  +   +   F ++ +P LS E+ E+L   +P +L  A +I G+TP
Sbjct: 540 PYLARQDAELRDLRASDAVPLGDGFPFADVPGLSREMVERLERAQPDSLAAAGRIAGITP 599

Query: 604 AALNLLLIYIKKNT 617
           AAL  LL++ ++  
Sbjct: 600 AALASLLVHARRRA 613


>gi|330447281|ref|ZP_08310931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491472|dbj|GAA05428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 629

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/616 (47%), Positives = 395/616 (64%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGLMAKAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVRNVLENQENLMIFQQAVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  + +V +     R  TVVLT GTFL G IHIG      GR GD  S +L + 
Sbjct: 127 DLIVENDRAAGVVTEMGLKFRSKTVVLTVGTFLGGKIHIGLENYSGGRTGDPASIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +++ +   E Q  D     FSFM  +  + RQI C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARSVDFSVLETQHGDNPTPTFSFMGKQSDHPRQIPCFITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T+ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T E K I GLF
Sbjct: 307 LYPNGISTSLPFDVQMQIVRSMKGFENATIVRPGYAIEYDFFDPRDLKQTFENKYIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A ++   +     R ++Y+GV+IDDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLMAGMNAALQAQDKEGWSPRRDEAYMGVLIDDLSTIGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP G +LG + + R  RF + ++     R  LK + + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTPKGRELGLVDDERWARFNQKLENMELERQRLKDIWIN 486

Query: 485 SKNLSSTSIS-FKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            K+     ++   +   TR A   + L  P+ S + L +I   A     +   E+++I+ 
Sbjct: 487 PKSDHVDELNKILKAPITREASGEDLLRRPEVSYEQLTAIETFAPAHEDVEAREQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    EK  +P D DYS +  LSNE+  KL+  KP ++  AS+I G
Sbjct: 547 KYQGYIDRQREEVEKSLRHEKTKLPFDLDYSQVKGLSNEVVAKLTDAKPESIGMASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+Y+KK+
Sbjct: 607 ITPAAISLLLVYLKKH 622


>gi|1322897|emb|CAA96953.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 679

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/617 (45%), Positives = 402/617 (65%), Gaps = 19/617 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+  ++   NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D   +P SF+ + ++    
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDALPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+ H +I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNL-HQSIHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+   S  + + +   R+++YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSEAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAAL 606
             + QA +I+G+T AAL
Sbjct: 638 LTIGQARRIQGITAAAL 654


>gi|284097362|ref|ZP_06385486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283831127|gb|EFC35113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 625

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/612 (47%), Positives = 387/612 (63%), Gaps = 3/612 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGGHAGCEAA  AA++G    L+T     I  M CNPA+GG+GKGHLV+EIDAL 
Sbjct: 6   DIIVIGGGHAGCEAALAAARMGCRVLLLTIDQDMIAHMPCNPAVGGIGKGHLVKEIDALG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G +GR  D AGIQFR+LN +KGPAVR  R Q D+ LYR AMQ  +  Q NL+++ G    
Sbjct: 66  GEIGRNTDKAGIQFRMLNTRKGPAVRATRVQCDKALYRKAMQDTLAHQPNLEIVSGTANR 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
             T+   I  +V      +    V++T+GTFL+G+IHIG   +P GR G++P+  L +  
Sbjct: 126 LLTKGGTIRGVVTDSGETVHAEAVIITSGTFLKGLIHIGMSHMPGGRAGEAPAEHLSDCM 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
             F F+ GRLKTGTP RLD  TI +    +Q  D    PFSF T +ITN QI C +T TN
Sbjct: 186 RDFGFEVGRLKTGTPPRLDRDTIDFSVMGEQPGDVPPRPFSFRTTRITNPQICCHLTYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH II  N+  S +Y G I S GPRYCPSIEDK+VRF ++  HQIF+EPE L++   Y
Sbjct: 246 ERTHDIIRNNLDRSPMYMGVIDSTGPRYCPSIEDKVVRFEDKTQHQIFVEPEELDSPSFY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q   ++TIPGL++  +++PGYAIEYDY  P +L  TLETK + GL+ A
Sbjct: 306 PNGISTSLPVDVQAALLKTIPGLDRATMLKPGYAIEYDYFPPYQLHQTLETKNVKGLYHA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGT+GYEEAAAQG++AGIN+A +      +   R+ +YIGV+IDDL +K   EPYRM
Sbjct: 366 GQINGTSGYEEAAAQGIMAGINAALQVKGEPPLILDRSQAYIGVLIDDLITKDAREPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLVLT 484
           FTSRAEYR+ LR DNAD RL   G +LG + +    +F   + + E   LR     L  T
Sbjct: 426 FTSRAEYRLLLREDNADQRLMDTGHRLGLVSDDLHAKFEEKQRVVENEKLRLSQTRLPWT 485

Query: 485 SKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            +     T I  K      T  + L  P+ S   L  I  +A   ++ + E ++I   Y 
Sbjct: 486 PEQAERWTRIEPKMPDPGATMAQLLKRPEVSYTRLMDIAGEANPANTKIGEAVEIAIKYD 545

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ+ + ++ +  E + IP +F Y  +   SNE+ EKLS ++P  + QAS+I GMTP
Sbjct: 546 GYIKRQLDQIEKFQKLEGKSIPSNFRYDRVTGFSNEVAEKLSKIRPATVGQASRISGMTP 605

Query: 604 AALNLLLIYIKK 615
           AA++LLL+ +++
Sbjct: 606 AAISLLLVALER 617


>gi|152984868|ref|YP_001351678.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PA7]
 gi|166222720|sp|A6VF43|MNMG_PSEA7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150960026|gb|ABR82051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PA7]
          Length = 631

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/614 (47%), Positives = 385/614 (62%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++++    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVVFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +        Y     LS P+    +L  I  DA   +  V E+++I + 
Sbjct: 488 PNTPQGEAIAERFGTPLTHEYNLLNLLSRPEIDYASLVEITGDAVD-NPQVAEQVEIRTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLLI++KK
Sbjct: 607 TPAAISLLLIHLKK 620


>gi|148266437|ref|YP_001233143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter uraniireducens Rf4]
 gi|205831514|sp|A5G9V2|MNMG_GEOUR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146399937|gb|ABQ28570.1| glucose inhibited division protein A [Geobacter uraniireducens Rf4]
          Length = 624

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 303/615 (49%), Positives = 395/615 (64%), Gaps = 3/615 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++SYDV+V+GGGHAGCEAA  AA++G  T L++     I  MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKSYDVVVVGGGHAGCEAALAAARMGCCTLLLSINLDAIALMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  DA GIQFR+LN KKGPAVR  R QAD++ YRL M+R +  Q+ LD+ Q 
Sbjct: 65  DALGGEMAKNIDATGIQFRILNTKKGPAVRASRAQADKQQYRLRMKRILEHQDKLDLKQA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E   +  +  +        T++LTTGTF+RG+IHIG    P GR GD PS  L
Sbjct: 125 EVTSLLVEDGNVVGVDTKAGVRYLGKTIILTTGTFMRGLIHIGLTHYPGGRAGDLPSVGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +  F  GRLKTGTPARLDG+TI + + E Q+ D   IPFSF TDKIT  Q+ C I
Sbjct: 185 SVSLEECGFKVGRLKTGTPARLDGRTIDFSRLEPQYGDNPPIPFSFSTDKITQSQVPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  +H II   +  S +YSG I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG++T
Sbjct: 245 AYTNERSHDIIRSGLDRSPLYSGIIEGVGPRYCPSIEDKVVRFPEKDRHQTFIEPEGVDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYP+G+ST+LP ++Q  F R+I GLE+V I+RP YAIEYDY++P +L  +LETK +  
Sbjct: 305 VEVYPSGLSTSLPIDVQWAFYRSIYGLERVEIMRPAYAIEYDYVDPIQLHASLETKVVGN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R D+YIGVMIDDL + G  E
Sbjct: 365 LYHAGQINGTSGYEEAAAQGLIAGINAALRVQGKEPLILGRNDAYIGVMIDDLVTLGSKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSL 481
           PYRMFTSRAEYR+ LR DNAD RL   G  +G + E   +RF AK       L+ L +  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLCEKGYAIGLVREEEYRRFHAKKNMIEEELQRLRQEK 484

Query: 482 VLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +L S+        F   G     T  + L  PD   + L  I     +  + V E+++I+
Sbjct: 485 LLPSEADDVFMEEFGLTGMQNAMTYEQLLRRPDIDSRELARIDKHIMEIPAAVREQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + +  +  E   IP D +Y+ LP LS E++EKL   +P  L QAS+I 
Sbjct: 545 IKYQGYIDRQLEQVERARKLESAKIPGDLEYAGLPGLSAEVREKLQQFRPDTLGQASRIP 604

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+ +L I +K
Sbjct: 605 GVTPAAITILSIALK 619


>gi|119947334|ref|YP_945014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychromonas ingrahamii 37]
 gi|166222724|sp|A1T100|MNMG_PSYIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119865938|gb|ABM05415.1| glucose inhibited division protein A [Psychromonas ingrahamii 37]
          Length = 629

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 309/622 (49%), Positives = 404/622 (64%), Gaps = 5/622 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIVIGGGHAG EAAA AA++G +T L+TH   T+G MSCNPAIGG+GKGHLVREI
Sbjct: 4   HEHFDVIVIGGGHAGTEAAAAAARMGMNTLLLTHNIETLGQMSCNPAIGGIGKGHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLM   AD AGIQFR+LN  KGPAVR  R QADR LY+ A++ ++ +QENL + Q 
Sbjct: 64  DALGGLMANAADKAGIQFRILNGSKGPAVRATRAQADRLLYKAAIREKLENQENLKIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV     E + +S +V +        TVVLT GTFL G IH+G      GR GDS S  L
Sbjct: 124 EVEDLVVENDRVSGVVTKMGIKFSAKTVVLTVGTFLNGQIHVGLKNHSGGRAGDSASIGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +    TGRLKTGTPAR+D ++I +   E Q  D     FSF+ D+  + RQI C 
Sbjct: 184 AQRLRELPLRTGRLKTGTPARIDSRSIDFSALEVQHGDNPTPVFSFLGDRSEHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL 
Sbjct: 244 ITHTNEKTHDIIRRNLDRSPMYSGVIEGVGPRYCPSIEDKVMRFADKNSHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +YPNGIST+LP ++Q  FIR++ G E   + RPGYAIEYDY +P++L  TLE+K I 
Sbjct: 304 TNEIYPNGISTSLPFDVQIDFIRSMKGFENAFVTRPGYAIEYDYFDPRDLKSTLESKYID 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+       +  C  R  +Y GV++DDL++ G  
Sbjct: 364 GLFFAGQINGTTGYEEAAAQGLLAGMNAGLMVQDKEGWCPGRDQAYAGVLVDDLSTLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K F+   +        LK+ 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADTRLTEKGRELGLVDDIRWKAFSMKQESVETEIQRLKNQ 483

Query: 482 VL--TSKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
            +   S+N S  +   K   +  +  E  +  P+ + Q+L SI        ++   E+++
Sbjct: 484 WIHPKSENASQINALLKTPMQRESTLEGMIRRPEVNYQSLISIEGLGPVLENVQAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  E +++K  E  L+P   DYS +  LSNE+  KL+  KP N+ QAS+
Sbjct: 544 IIIKYQGYVDRQREEIEKLKRNEDTLLPIHLDYSDIKGLSNEVTAKLNDTKPENIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TPAA+++LLIYIKKN ++
Sbjct: 604 ISGITPAAISILLIYIKKNALR 625


>gi|326797439|ref|YP_004315259.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinomonas mediterranea MMB-1]
 gi|326548203|gb|ADZ93423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinomonas mediterranea MMB-1]
          Length = 629

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARTGAKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M    D  GIQFR LN +KGPAVR  R QADR LY+ A+++++ +QENL + Q    
Sbjct: 67  DGAMALATDQGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRQQLENQENLWLFQQSCE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+     +V Q        TVVLT GTFL G+IH+G      GR GD PS  L   
Sbjct: 127 DLIVEEGAARGMVTQTGIRFLSKTVVLTAGTFLGGIIHVGLQNHSGGRAGDPPSIGLAEK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP R+D +++ +   + Q  D+     S+M +   + RQI C IT 
Sbjct: 187 LRALPFRVDRLKTGTPPRIDARSVDFSVMQAQPGDDVTPVMSYMGNSAMHPRQINCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  
Sbjct: 247 TNEQTHDIIRSGMDRSPMYTGVIEGVGPRYCPSIEDKIVRFADKNSHQIFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R++ GLE  +I RPGYAIEYDY NP++L  +LETK + GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSMKGLENAHITRPGYAIEYDYFNPQDLKYSLETKHMPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A +S   D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAALQSQDKDAWTPRRDEAYLGVLVDDLITMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F +  +        +KS  + 
Sbjct: 427 RMFTSRAEYRLVLREDNADMRLTEKGRELGVVSDERWAAFCEKRESIERETQRMKSSWIV 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
                S +I+ K +      Y   + L  P     ++ ++   P+  K    V E++QI 
Sbjct: 487 PNTPESEAINPKLETPISREYNLLDLLKRPGIEYSDVANLKNAPE-EKIDIRVAEQVQIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + + ++ +E   +P+D DYS +  LSNE+K+KL   KP  L  AS+I+
Sbjct: 546 VKYEGYISRQADDIERLRRQENTALPEDLDYSGIDGLSNEVKQKLIDAKPQTLAAASRIQ 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LLL+++KK ++
Sbjct: 606 GITPAAISLLLVHLKKRSI 624


>gi|70733509|ref|YP_263284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens Pf-5]
 gi|81170572|sp|Q4K399|MNMG_PSEF5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68347808|gb|AAY95414.1| glucose inhibited division protein A [Pseudomonas fluorescens Pf-5]
          Length = 630

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/617 (47%), Positives = 390/617 (63%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAV-REILENQPNLWIFQQAA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L  
Sbjct: 126 DDLIVEQDQVRGVVTQMGLRFFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT
Sbjct: 186 RLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDVRWAAFCKKREGIAQEEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                   +I+  Q   T   +E+     LS P+     L  +     +    V E+++I
Sbjct: 486 RPGTEQGDAIA--QKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E   ++  E   +P D DYS +  LS E++ KL   +P  L QAS+I
Sbjct: 543 KTKYAGYIDRQQDEIARLRASEDTKLPVDIDYSGISGLSKEIQSKLGATRPETLGQASRI 602

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LL+I++KK
Sbjct: 603 PGVTPAAISLLMIHLKK 619


>gi|328352837|emb|CCA39235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Pichia pastoris CBS 7435]
          Length = 656

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/631 (45%), Positives = 399/631 (63%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIG GHAG EAA  +A+ G  T+LIT   S IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 15  HPVVVIGAGHAGIEAATGSARTGVLTSLITPDLSKIGTCSCNPSMGGVGKGTLLREVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
           DG+  ++ D AGIQF++LN  +GPAV GPR Q DR++Y   MQ+E+    NL++++G+V 
Sbjct: 75  DGVAPKIVDKAGIQFKILNRSRGPAVWGPRAQIDRKIYLEEMQKELEGYPNLNIVEGKVE 134

Query: 125 -------AGFNTEKNI-------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                  A   T  ++       I  +V+    +IR   V++TTGTFL G IHIG    P
Sbjct: 135 DLLIEPPAQTKTSTDVEGRSFGRIRGLVLDSGDLIRADKVIITTGTFLGGEIHIGLNCYP 194

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR+G+  +  L  +  +  F  GRLKTGTP RL  KTI +   E Q  D+   P S+M 
Sbjct: 195 AGRIGEDATFGLSKTLNEAGFRLGRLKTGTPPRLSSKTIDYSNLEVQHGDDPPQPMSYMN 254

Query: 231 DKI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           D +  N Q+ C  T T  E H +I  N+  S      +K  GPRYCPSIE K++RF ++ 
Sbjct: 255 DTVRINEQLRCHATETTPEMHDLIRSNLDKSIHIRETVK--GPRYCPSIESKVIRFADKT 312

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H ++LEPEG++ DVVYPNGIS  +PE+IQ Q +R I GLEKVN+++PGY +EYDY++P+
Sbjct: 313 KHTVWLEPEGIDNDVVYPNGISCTMPEDIQLQMVRMIKGLEKVNMLQPGYGVEYDYVDPR 372

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           EL PTLETK I GL+LAGQINGTTGYEEAA+QG++AG+N+A        +  SR D YIG
Sbjct: 373 ELKPTLETKLIEGLYLAGQINGTTGYEEAASQGVIAGVNAALSQQNKPPLKLSRCDGYIG 432

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL +KGV EPYRMFTSR+E+R+S+R DNAD RLTP G  +GC+G+ R   F K  +
Sbjct: 433 VLIDDLITKGVQEPYRMFTSRSEFRVSVRSDNADLRLTPKGRDVGCVGDERWDHFLKEKE 492

Query: 470 EYNFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--PDAR 526
             N  R  L     +S K   S  I+   D K +TA++ L Y    ++ LF +   P   
Sbjct: 493 LLNTTRDYLTKFKQSSAKWRQSLGINISDDSKPKTAFDILKYQKVGMKELFPLLNFPHKA 552

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             S  ++ +L +E  YA +  +++   K  + +E  L+P  FDY  +PALS+E+   L+ 
Sbjct: 553 DLSDRILHKLTVEGLYAGHLKKEIGYIKAFQSDENLLLPTGFDYRDVPALSSEVVNLLNT 612

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           ++P  + QA +I+G+TPAA   L   I+ ++
Sbjct: 613 IQPETIGQARRIQGVTPAAFFELYRLIRSSS 643


>gi|241766013|ref|ZP_04763934.1| glucose inhibited division protein A [Acidovorax delafieldii 2AN]
 gi|241364012|gb|EER59268.1| glucose inhibited division protein A [Acidovorax delafieldii 2AN]
          Length = 660

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/641 (46%), Positives = 399/641 (62%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + K E+Q  D       E  +P FSFM     +
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSKCEEQPGDGMPGGVNEGTVPVFSFMGSATMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQIF
Sbjct: 245 PKQMPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ+  +R++PGLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMPGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV++DD
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGDAPWLPGRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R   F++     +  
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEVGRQMGLVDDARWNAFSRKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              LK+  +  +NL    S  +  K        +E L  PD S  NL S+  D  K++S 
Sbjct: 485 TERLKATWVNPRNLPAAESERVLGKSIEHEYNLFELLRRPDVSYANLMSL--DGGKYASS 542

Query: 532 -------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                        V+E+++I + YA Y  RQ  E +     EK  +P D DY  + ALS 
Sbjct: 543 GVSRETLGDLTEPVLEQVEIAAKYAGYIDRQKGEVERAAHFEKLRLPPDLDYMQVTALSI 602

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E ++ L+  +P  L  AS+I G+TPA+++LL++++KK   K
Sbjct: 603 EARQVLNRHRPETLGHASRITGITPASISLLMVHLKKGGFK 643


>gi|317401627|gb|EFV82253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Achromobacter xylosoxidans C54]
          Length = 639

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 295/625 (47%), Positives = 396/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARTGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRGRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VEDLMVEGDRVVGAVTQVGLKFRAKTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAISLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   IP FS+M    +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRSINYGILEEQPGDLDPIPVFSYMGSVAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I+
Sbjct: 305 THEVYPNGVSTSLPFDVQLALIHSLPGLENAHILRPGYAIEYDYFDPRGLKSTLETKAIA 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A  +   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGVNAALSALDREQWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRQLGIVDDARWDAFNRKRDAVAAEVERLKSS 484

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS--------ICPDARKFSS 530
            +  + L    +  +  K   +  +  + L  P+ S + L +        +         
Sbjct: 485 WVNPRVLPQEVAEPLLGKAIEREYSLADLLKRPNVSYEALMAARNTDGTLLAGPGVAADE 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQVKYAGYIARQQDEVQKQIAHEQQPIPADVDYDAVTSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA +I G+TPAA++LLLI++K+
Sbjct: 605 TIGQAGRISGVTPAAISLLLIHLKR 629


>gi|296810412|ref|XP_002845544.1| mitochondrial translation optimization protein [Arthroderma otae
           CBS 113480]
 gi|238842932|gb|EEQ32594.1| mitochondrial translation optimization protein [Arthroderma otae
           CBS 113480]
          Length = 693

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/633 (45%), Positives = 393/633 (62%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIVIGGGHAG EA   AA+ GA TALIT   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RQYDVIVIGGGHAGSEACTAAARSGARTALITPSRSDIGVCSCNPSFGGIGKGTMIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELSNTPGLSIVEGK 154

Query: 124 VA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA            N  +  I  + ++   +I    V++TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVISKENVKNLNGPQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L NS  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + +
Sbjct: 215 MGEAATFGLSNSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEPQLGDSPPSPFSYLNNSV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF +++ 
Sbjct: 275 QIGDKGQLNCWSAYTNEASHDVVRENLDKSIHIRETVN--GPRYCPSLESKIIRFKDKSR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +IG
Sbjct: 393 SLLPTLETKLISGLYLAGQINGTTGYEEAAAQGILAGINAGLASQSKPPMILSRADGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R + F +  +
Sbjct: 453 IMVDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRHFTETKE 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SIC 522
           + + LR+LL++    S   S      + D   R+A+E LS+   S+ ++        ++ 
Sbjct: 513 QLSHLRTLLENTRHPSTLWSRKGFPVRTDSSVRSAFELLSHNGISLDDIIPHIDSSPAVL 572

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                FS  +  R+ IE  YA YT RQ + A   + +E  L+P D DYS +  LS E ++
Sbjct: 573 HALSSFSPEIRSRVAIEGRYAPYTKRQEVTALSFERDENMLLPPDIDYSKMLGLSTEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 633 ALERVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|332533707|ref|ZP_08409566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036871|gb|EGI73332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 629

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/621 (47%), Positives = 401/621 (64%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +Q+NL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQDNLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENYKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D +T+ + K E Q  D     FSFM  +  + +QI 
Sbjct: 182 ALAERLREHPFRVDRLKTGTPPRIDARTVDFTKMEAQPGDMPTPVFSFMGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSISGFENAHICRPGYAIEYDYFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    D     R ++Y+GV+IDDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKDSWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEVIEKEKQRIK 481

Query: 480 SLVLTSKNLSSTSI-SFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSL-VIER 535
              +   ++    + +  +   TR A   E L  P+    +L +I     +F+++  +E+
Sbjct: 482 DTWIHKDHVVVDQVNALLKTPLTREASLEELLRRPEIRYNDLMAIDGLGSEFTNVAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEQTILPKEFDYKTVSGLSNEVVAKLIESRPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA++LLL+Y+KK 
Sbjct: 602 SRISGITPAAISLLLVYLKKQ 622


>gi|254572073|ref|XP_002493146.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia pastoris GS115]
 gi|238032944|emb|CAY70967.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia pastoris GS115]
          Length = 679

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/631 (45%), Positives = 399/631 (63%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIG GHAG EAA  +A+ G  T+LIT   S IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  HPVVVIGAGHAGIEAATGSARTGVLTSLITPDLSKIGTCSCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
           DG+  ++ D AGIQF++LN  +GPAV GPR Q DR++Y   MQ+E+    NL++++G+V 
Sbjct: 98  DGVAPKIVDKAGIQFKILNRSRGPAVWGPRAQIDRKIYLEEMQKELEGYPNLNIVEGKVE 157

Query: 125 -------AGFNTEKNI-------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                  A   T  ++       I  +V+    +IR   V++TTGTFL G IHIG    P
Sbjct: 158 DLLIEPPAQTKTSTDVEGRSFGRIRGLVLDSGDLIRADKVIITTGTFLGGEIHIGLNCYP 217

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR+G+  +  L  +  +  F  GRLKTGTP RL  KTI +   E Q  D+   P S+M 
Sbjct: 218 AGRIGEDATFGLSKTLNEAGFRLGRLKTGTPPRLSSKTIDYSNLEVQHGDDPPQPMSYMN 277

Query: 231 DKI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           D +  N Q+ C  T T  E H +I  N+  S      +K  GPRYCPSIE K++RF ++ 
Sbjct: 278 DTVRINEQLRCHATETTPEMHDLIRSNLDKSIHIRETVK--GPRYCPSIESKVIRFADKT 335

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H ++LEPEG++ DVVYPNGIS  +PE+IQ Q +R I GLEKVN+++PGY +EYDY++P+
Sbjct: 336 KHTVWLEPEGIDNDVVYPNGISCTMPEDIQLQMVRMIKGLEKVNMLQPGYGVEYDYVDPR 395

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           EL PTLETK I GL+LAGQINGTTGYEEAA+QG++AG+N+A        +  SR D YIG
Sbjct: 396 ELKPTLETKLIEGLYLAGQINGTTGYEEAASQGVIAGVNAALSQQNKPPLKLSRCDGYIG 455

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL +KGV EPYRMFTSR+E+R+S+R DNAD RLTP G  +GC+G+ R   F K  +
Sbjct: 456 VLIDDLITKGVQEPYRMFTSRSEFRVSVRSDNADLRLTPKGRDVGCVGDERWDHFLKEKE 515

Query: 470 EYNFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--PDAR 526
             N  R  L     +S K   S  I+   D K +TA++ L Y    ++ LF +   P   
Sbjct: 516 LLNTTRDYLTKFKQSSAKWRQSLGINISDDSKPKTAFDILKYQKVGMKELFPLLNFPHKA 575

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             S  ++ +L +E  YA +  +++   K  + +E  L+P  FDY  +PALS+E+   L+ 
Sbjct: 576 DLSDRILHKLTVEGLYAGHLKKEIGYIKAFQSDENLLLPTGFDYRDVPALSSEVVNLLNT 635

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           ++P  + QA +I+G+TPAA   L   I+ ++
Sbjct: 636 IQPETIGQARRIQGVTPAAFFELYRLIRSSS 666


>gi|302035745|ref|YP_003796067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Nitrospira defluvii]
 gi|300603809|emb|CBK40141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Nitrospira defluvii]
          Length = 624

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/617 (47%), Positives = 400/617 (64%), Gaps = 11/617 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGGHAGCEAA  AA++GA T L+T     I  MSCNPAIGG+ KGHLV+EIDAL 
Sbjct: 6   DVIVVGGGHAGCEAALAAARMGARTILLTMDPDRIAQMSCNPAIGGIAKGHLVKEIDALG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MGR  D AGIQFR++N  KGPAVR  R Q D+++YR  MQR + +Q  L++  G V  
Sbjct: 66  GEMGRNTDQAGIQFRMINTSKGPAVRALRAQCDKKVYREVMQRTLRAQPALEIRGGTVDR 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
             T    ++ IV      I    VVLT+GTFL+G+IHIG    PAGR G++ +  L +  
Sbjct: 126 ILTRAGGVTGIVTDAGVSIHARAVVLTSGTFLKGLIHIGLNHFPAGRAGEASAEHLSDCM 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
             F F+ GRLKTGTP RLD  +I +   E Q  D+   PFS+ T +++  Q+ C +T TN
Sbjct: 186 RDFGFEVGRLKTGTPPRLDRDSIDFSVMEVQPGDDPPPPFSYRTRRVSLPQVPCHLTYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II +NI  S ++SG I S GPRYCPSIEDK+VRF +++ HQIF+EPEGL+T+  Y
Sbjct: 246 SQTHDIIAKNIDRSPLFSGVIDSIGPRYCPSIEDKVVRFADKDRHQIFIEPEGLDTNEFY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q   ++TIPGLE+  +++PGYA+EYDY  P++L  +LETK ++GL+ A
Sbjct: 306 PNGISTSLPVDVQAAILKTIPGLEQTRMLKPGYAVEYDYFPPRQLHNSLETKLVAGLYHA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGT+GYEEA AQG++AGIN+A K      +   R+ +YIGV+IDDL +K   EPYRM
Sbjct: 366 GQINGTSGYEEAGAQGIMAGINAALKLRGEAPLVLDRSQAYIGVLIDDLITKDAREPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCI-----GERRQKRFA--KYIQEYNFLRSLLK 479
           FTSRAEYR+ LR DNAD RL  +G ++G +     G+   KRFA  + +Q     R  + 
Sbjct: 426 FTSRAEYRLLLRHDNADLRLMDLGHRIGLVSDEMHGKLEAKRFAIEREVQRLKETRPKIT 485

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           S V   K L   +      G T++  E L   + S   + ++   A      + E +Q+E
Sbjct: 486 SDV---KRLMEEA-EVGAVGPTQSLAEILRRQEMSYNKIVAVFGGADIDDPDITEAIQLE 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + +  +  E R IP  FDY  +   S+E++EKL  +KP ++ QAS+I 
Sbjct: 542 VKYEGYIKRQLQQIQRSEKLEHRAIPDQFDYDGITGFSSEVREKLKRVKPASVGQASRIS 601

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++LLL+ I+++
Sbjct: 602 GVTPAAISLLLVAIERH 618


>gi|121592462|ref|YP_984358.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acidovorax sp. JS42]
 gi|205831484|sp|A1W207|MNMG_ACISJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120604542|gb|ABM40282.1| glucose inhibited division protein A [Acidovorax sp. JS42]
          Length = 661

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 297/645 (46%), Positives = 399/645 (61%), Gaps = 31/645 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QDFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDK--- 232
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM      
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGQVPVFSFMAHAYGG 244

Query: 233 --ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  
Sbjct: 245 AAMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKES 304

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ 
Sbjct: 305 HQIFLEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMHGLENAHILRPGYAIEYDYFDPRS 364

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +   +     +R ++Y+GV
Sbjct: 365 LKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGVGAWVPARDEAYLGV 424

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++    
Sbjct: 425 LVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRKRDA 484

Query: 471 YNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
            +     LKS  +  +NL +     +  K        ++ L  PD     L ++  D  K
Sbjct: 485 VSRETERLKSTWVNPRNLPTVEAERVLGKAIEHEYNLFDLLRRPDVGYDALTTM--DGGK 542

Query: 528 F-------------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           +             S+ VIE+++I + YA Y  RQ  E +     EK  +P+D DY  + 
Sbjct: 543 YASEAVSRETLGELSASVIEQVEIAAKYAGYIDRQRDEVQRAAHFEKLRLPEDLDYMQVA 602

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ALS E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 603 ALSIEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 647


>gi|291288765|ref|YP_003505581.1| glucose inhibited division protein A [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885925|gb|ADD69625.1| glucose inhibited division protein A [Denitrovibrio acetiphilus DSM
           12809]
          Length = 619

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/615 (47%), Positives = 389/615 (63%), Gaps = 10/615 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+G GHAGCEAA  +A++GA T L T    ++  MSCNPAIGGL KG++V++ID
Sbjct: 6   KTYDVIVVGAGHAGCEAALASARMGADTLLFTISVESLAQMSCNPAIGGLAKGNIVKDID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D  GIQFRVLN+KKGPAVR  R QAD+ELYR  M + I+ Q +LD+ QG 
Sbjct: 66  ALGGEMAKNTDETGIQFRVLNMKKGPAVRSSRAQADKELYRQRMLQVIMQQSSLDLKQGM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E   +  +V     + +   V+L+TGTFL+G+IHIG     AGRM +  S +L 
Sbjct: 126 VEGVEAESGEVVGVVSDTGMLYKAKKVILSTGTFLKGLIHIGDSHYSAGRMNEFASINLV 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K  F+T RLKTGTPARLD  TI + K E+Q  D    PFSF T +I   Q+ C IT
Sbjct: 186 TSLHKLGFETERLKTGTPARLDVGTIDFSKLEEQGGDNPPKPFSFETKEILLPQVPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S +Y G I+  GPRYCPSIEDK+ +F  ++ HQIFLEPEGL + 
Sbjct: 246 YTNENTHNIIRENMHRSPLYGGIIEGIGPRYCPSIEDKVKKFPHKDRHQIFLEPEGLKSR 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP ++Q    R++PGLEKV  +RP YAIEYD++ P  L PT+ETK + GL
Sbjct: 306 EYYANGFSSSLPIDVQIAMYRSVPGLEKVEFVRPAYAIEYDFVQPTALHPTMETKHVKGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +  GQ+NGT+GYEEAAAQGLVAGIN+    +  +     R +SYIGVM DDL +KGV EP
Sbjct: 366 YFTGQLNGTSGYEEAAAQGLVAGINAVLAVDGKEPFIVKRDESYIGVMCDDLVNKGVDEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMF+SRAEYR+ LR DNA+ RL   G  LG I + R +RF K  + +    S L +  +
Sbjct: 426 YRMFSSRAEYRLWLREDNAEYRLLEKGYDLGLISKTRYERFQKEKEAFENEFSRLNNFEI 485

Query: 484 T-SKNLSSTSISFKQDGKTRT-AYEFLSYPDFS---IQNLFSICPDARKFSSLVIERLQI 538
           T SK+       +    +T+T A E L  P+ +   I+ +F    D +     + E+++I
Sbjct: 486 TPSKDNLEILAEYNIAPRTKTNAKEILRRPELTYADIKKMFGGTDDEK-----ISEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q  E ++    E   +P D  Y  +  L  E  EKL+ ++P  L QAS+I
Sbjct: 541 AVKYEGYLNKQKEEIEKFNRTENVKLPDDIRYDDIQGLRREYIEKLNTIRPQTLGQASRI 600

Query: 599 EGMTPAALNLLLIYI 613
           +GMTPAA++LL IYI
Sbjct: 601 KGMTPAAVSLLHIYI 615


>gi|222109270|ref|YP_002551534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Acidovorax ebreus TPSY]
 gi|254811509|sp|B9M9W3|MNMG_ACIET RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|221728714|gb|ACM31534.1| glucose inhibited division protein A [Acidovorax ebreus TPSY]
          Length = 657

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 297/641 (46%), Positives = 399/641 (62%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QDFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM +   +
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGAVPVFSFMGNAAMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 245 PRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +         +R ++Y+GV++DD
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGERAWVPARDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     +  
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTDAGRRMGLVDDARWDAFSRKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--- 528
              LKS  +  +NL +     +  K        ++ L  PD     L ++  D  K+   
Sbjct: 485 TERLKSTWVNPRNLPTVEAERVLGKAIEHEYNLFDLLRRPDVGYDALTTM--DGGKYASE 542

Query: 529 ----------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                     S+ VIE+++I + YA Y  RQ  E +     EK  +P+D DY  + ALS 
Sbjct: 543 AVSRETLGELSAPVIEQVEIAAKYAGYIERQRDEVQRAAHFEKLRLPEDLDYMQVAALSI 602

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 603 EVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|148550506|ref|YP_001270608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida F1]
 gi|166222722|sp|A5WBB4|MNMG_PSEP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148514564|gb|ABQ81424.1| glucose inhibited division protein A [Pseudomonas putida F1]
          Length = 630

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 386/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDLRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   ++  K        Y     L+ P+     L             V E+++I +
Sbjct: 486 RPNTEQGQAVVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPETLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++L+LI++KK
Sbjct: 605 VTPAAISLMLIHLKK 619


>gi|296392432|ref|ZP_06881907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PAb1]
          Length = 630

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/614 (47%), Positives = 383/614 (62%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFVAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +        Y     LS P+     L  I  DA   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLLI++KK
Sbjct: 606 TPAAISLLLIHLKK 619


>gi|311109650|ref|YP_003982503.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Achromobacter xylosoxidans A8]
 gi|310764339|gb|ADP19788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Achromobacter xylosoxidans A8]
          Length = 639

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/625 (47%), Positives = 397/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARTGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRGRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  +VVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VEDLMVEGDRVVGAVTQIGLQFRAKSVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAVSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   IP FS+M +  +  RQ+ C 
Sbjct: 185 QRLKELKLPQGRLKTGTPPRIDGRSINYSILEEQPGDLNPIPVFSYMGNVGMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 THEVYPNGVSTSLPFDVQLALIHSLPGLENAHILRPGYAIEYDYFDPRGLKSTLETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A  +   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGVNAALFALDREQWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGIVDDARWDAFNRKRDAVAAEVERLKSS 484

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS--------ICPDARKFSS 530
            +  + L    +  +  K   +  +  + L  P  S + L +        +         
Sbjct: 485 WVNPRLLPAEVAEPLLGKAIEREYSLADLLKRPSVSYEALMAARNADGSLLAGPGVVADE 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ +E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQVKYAGYIDRQQVEVQKQIAHEQQAIPADVDYDAVTSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TVGQAARISGVTPAAISLLLIHLKR 629


>gi|116053716|ref|YP_794043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894668|ref|YP_002443538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa LESB58]
 gi|254237761|ref|ZP_04931084.1| glucose-inhibited division protein A [Pseudomonas aeruginosa C3719]
 gi|254243110|ref|ZP_04936432.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 2192]
 gi|122256264|sp|Q02DE3|MNMG_PSEAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704796|sp|B7V7A2|MNMG_PSEA8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115588937|gb|ABJ14952.1| glucose-inhibited division protein A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169692|gb|EAZ55203.1| glucose-inhibited division protein A [Pseudomonas aeruginosa C3719]
 gi|126196488|gb|EAZ60551.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 2192]
 gi|218774897|emb|CAW30715.1| glucose-inhibited division protein A [Pseudomonas aeruginosa
           LESB58]
          Length = 630

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/614 (47%), Positives = 383/614 (62%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +        Y     LS P+     L  I  DA   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLLI++KK
Sbjct: 606 TPAAISLLLIHLKK 619


>gi|293393679|ref|ZP_06637988.1| glucose-inhibited division protein A [Serratia odorifera DSM 4582]
 gi|291423801|gb|EFE97021.1| glucose-inhibited division protein A [Serratia odorifera DSM 4582]
          Length = 629

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 394/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRSALENQPNLTLFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAEQHGDTPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 VYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +   +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRYAVDDEGWSPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+++ ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWARYSEKLELIERERQRLRDVWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
             S N++  +   K    +     E L  P+     L ++   A   + +   E+++I+ 
Sbjct: 487 PHSDNVAQVNSLLKAPLSREANGEELLRRPEMDYAQLTAVDAFAPPLTDTQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E  + +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIDKQQRNENTVLPLDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LL+++KK 
Sbjct: 607 ITPAAISILLVWLKKQ 622


>gi|27364443|ref|NP_759971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus CMCP6]
 gi|29611746|sp|Q8DDH9|MNMG_VIBVU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27360562|gb|AAO09498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus CMCP6]
          Length = 632

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/623 (46%), Positives = 391/623 (62%), Gaps = 11/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQD------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-V 532
           S   T  N +ST I            +  +  + L  P+ + + L S+   A     L  
Sbjct: 482 S---TWMNPASTGIEELNQLLKSPMNREASGEDLLRRPEMTYEQLTSLAAFAPALDDLEA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L
Sbjct: 539 AEQVEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPETL 598

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
             AS+I G+TPAA+++LL+++KK
Sbjct: 599 GIASRISGITPAAISILLVHLKK 621


>gi|329900649|ref|ZP_08272541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549425|gb|EGF33989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 644

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/623 (46%), Positives = 398/623 (63%), Gaps = 12/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L++H   T+G MSCNP+IGG+GKGHLVRE+DA+
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVREVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRTRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ +L   
Sbjct: 127 DLIVEGDRVVGAVTQIGIQFRSRAVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAVTLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP RLDG+TI +   ++Q  D   IP FS M    +  +Q+ C IT
Sbjct: 187 LKELKMPQGRLKTGTPPRLDGRTIDFSVMQEQPGDLDPIPVFSVMGSVSMHPKQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I   GPRYCPSIEDKI RF +++ HQIFLEPEGL T+
Sbjct: 247 HTNESTHDIIRGGLDRSPMYTGVIAGIGPRYCPSIEDKIHRFADKSSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   +R++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EYYPNGISTSLPFDVQLALVRSMVGLEQAHILRPGYAIEYDYFDPRGLKASLETKSIQGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AG+N+A ++   D     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGMLAGLNAALQTQGRDAWTPGRDQAYLGVLVDDLVTQGVQEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ +   F +  +        L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGCVGDLQWAAFEQKREAVARELERLRSTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSS------LVI 533
           + + L+   S  +  K   +  +  + L  P+ S   L  +   + +  +       +V 
Sbjct: 487 SPRVLAEAESERVLGKAIEREYSLADLLRRPNVSYAGLLGLTGMEGQSLAGPGVVDLIVR 546

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  RQ  E +  +  E   +P +FDY ++ ALS E+++KL   +P  L 
Sbjct: 547 EQVEIQLKYAGYIDRQAREIERHEQFEHLKLPVEFDYLAVSALSMEVRQKLHAHRPETLG 606

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA++LLL+++KK 
Sbjct: 607 QASRISGVTPAAMSLLLVHLKKG 629


>gi|168700225|ref|ZP_02732502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemmata obscuriglobus UQM 2246]
          Length = 611

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 395/619 (63%), Gaps = 27/619 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GHAG EAA  AA+LG  T L++     +  MSCNPAIGG+ KG +VREIDAL
Sbjct: 8   FDVVVVGAGHAGTEAAMAAARLGLRTCLLSMNADAVAQMSCNPAIGGVAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG+  DA+GIQFRVLN  KGPA+  PR QAD++LY+  M+R +  QENL + Q  V 
Sbjct: 68  GGVMGKCIDASGIQFRVLNASKGPAMHSPRAQADKKLYQFTMKRWVEDQENLTLRQELVE 127

Query: 126 GFNTEKNIISS---------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           G   E +  S+         +V + ++      V+LTTGTFL+ ++H G+ K   GR GD
Sbjct: 128 GLLLEPHADSASPATRRVVGVVARGDTRYLAPAVILTTGTFLKAIMHTGEAKTVGGRAGD 187

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           + +  +  S     F+  R KTGTP RL+G+TI + K ++Q  D    PFSF T+KIT  
Sbjct: 188 ASAEGMSASLADAGFELARFKTGTPCRLNGRTIDFSKCQEQPGDPVPRPFSFSTEKITVP 247

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C  T T    H +I  N+  + +YSG I   GPRYCPSIEDK+VRF +++ H +FLE
Sbjct: 248 QVVCHSTETTAAVHDLIRANLHRAPMYSGQICGRGPRYCPSIEDKVVRFADKDSHLLFLE 307

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGLNT   Y NGIST+LP+++Q   ++ IPGLE   ++R GYA+EYDY  P +L PTLE
Sbjct: 308 PEGLNTREYYCNGISTSLPKDVQAAMLKLIPGLENAEVMRWGYAVEYDYAPPTQLHPTLE 367

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK ++GL+ AGQINGTTGYEEAAAQGLVAG+N+A K      +   R+ +YIGV+IDDL 
Sbjct: 368 TKPVAGLYFAGQINGTTGYEEAAAQGLVAGLNAALKLKGEPALVLDRSAAYIGVLIDDLV 427

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSRAEYR+ LR DNAD RLTP+G K+G +G     RF +  +  + L+ 
Sbjct: 428 TKGVDEPYRMFTSRAEYRLLLRHDNADRRLTPLGRKVGSVGVADWARFERKEKGISDLQG 487

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--VIE 534
           +L+S      +L++           RT  E+          + + CP   ++ +   V+E
Sbjct: 488 VLRSTKSGGDSLATWV--------RRTEVEW--------SEVVARCPALAEWDARPDVVE 531

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ +E+ Y+ Y  RQ  E +  +  E R IP  FDY+ +  L +E +EKLS ++P +L Q
Sbjct: 532 QVVLEAKYSGYIDRQAAEVERFQRLENRRIPDAFDYARVGQLRHEAREKLSRIRPVSLGQ 591

Query: 595 ASKIEGMTPAALNLLLIYI 613
           AS+I G+TPA L +LL+Y+
Sbjct: 592 ASRISGITPADLAMLLLYL 610


>gi|254427865|ref|ZP_05041572.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax sp. DG881]
 gi|196194034|gb|EDX88993.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax sp. DG881]
          Length = 631

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/619 (47%), Positives = 393/619 (63%), Gaps = 4/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ + VIVIGGGHAG EAA  +A++G ST L+TH   T+G MSCNPAIGG+GK HLVRE
Sbjct: 3   FSQRFGVIVIGGGHAGTEAALASARMGVSTLLLTHNIETLGQMSCNPAIGGIGKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D  GIQFRVLN +KGPAVR  R QADRELY+ A++  + +Q++L + Q
Sbjct: 63  IDALGGAMGRATDKGGIQFRVLNARKGPAVRATRAQADRELYKAAIRGTLENQQDLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V           VVLT GTFL GVIHIG      GR GD PSN+
Sbjct: 123 QAVDDLIVENGRCVGVVTNMGLRFMADAVVLTAGTFLGGVIHIGMDNHQGGRAGDQPSNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +  F   RLKTGTP R+DGKT+ +   E+Q+ D  L   S++     + +Q+ C
Sbjct: 183 LARRLRELPFRVDRLKTGTPPRIDGKTVDFSVMEEQWGDSPLPVMSYLGQVEEHPQQVCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II      S +++G I   GPRYCPSIEDK+ R+ +++ HQIF+EPEGL
Sbjct: 243 YITHTNAQTHDIIRSGFDRSPMFTGVIDGVGPRYCPSIEDKVNRYPDKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYDY NP++L  +LET+ +
Sbjct: 303 NTHELYPNGISTSLPFDVQLQAVRSIRGFENAHITRPGYAIEYDYFNPQDLKHSLETQHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+A  S   D     R ++YIGV++DDL + G 
Sbjct: 363 PGLFFAGQINGTTGYEEAGAQGLLAGLNAALLSQGKDAWTPRRDEAYIGVLVDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDERWAAFNAKREGMAQEEQRLKS 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +  K   + +++   +      Y   + L  P+ +  NL      A +  S VIE+++
Sbjct: 483 TWVRPKTPQAEAVNALIEKPLAHEYNLLDLLKRPELTYANLADAVALAERPDSAVIEQME 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + YA Y  RQ  E ++++  E   +P +FDY  +  LSNE+K+KL  ++P  L QA +
Sbjct: 543 ILAKYAGYIDRQADEIEKLRAAETTALPAEFDYGQVKGLSNEVKQKLGEIRPQTLGQAGR 602

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LL+IY+KK+
Sbjct: 603 IPGVTPAAISLLMIYLKKH 621


>gi|127514781|ref|YP_001095978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella loihica PV-4]
 gi|166200613|sp|A3QJS1|MNMG_SHELP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126640076|gb|ABO25719.1| glucose inhibited division protein A [Shewanella loihica PV-4]
          Length = 629

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/620 (47%), Positives = 386/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q  V 
Sbjct: 67  GGAMAVATDHAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLRLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + +  +V Q         +VLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVGNDRVIGVVTQMGLAFEAPAIVLTAGTFLSGKIHIGLENYSGGRAGDPPSISLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D  TI +D   +Q  D+ L   SF+ D K   +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTINFDLMTEQKGDDPLPVMSFIGDVKDHPKQISCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNERTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK ISGLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIQGMENAEIIRPGYAIEYDYFDPRDLKNSLETKAISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F    +     L+ L    + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDDRWAKFNAKREAIELELQRLRSQWIH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSI------CPDARKFSSLVIER 535
            +  L            TR A   E L  P+     L S+        D R       E+
Sbjct: 487 PNSPLVDALNPHLNTPITREATFEELLRRPELDYPKLMSVEGFGPAIEDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    EK  +P+D DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQDEIDKAIRHEKTGLPQDLDYQEVPGLSNEVIAKLNDHKPDTVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|94967111|ref|YP_589159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Koribacter versatilis Ellin345]
 gi|166222901|sp|Q1IVL5|MNMG_ACIBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94549161|gb|ABF39085.1| glucose inhibited division protein A [Candidatus Koribacter
           versatilis Ellin345]
          Length = 649

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/635 (47%), Positives = 394/635 (62%), Gaps = 28/635 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  AA++G  TAL T     I  MSCNPA+GG+ KGHLVRE+DAL
Sbjct: 7   YDVVVVGAGHAGCEAAMAAARMGLRTALYTLNVDLIAQMSCNPAVGGIAKGHLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG V DA GIQFR+LN  +GPAV  PR Q D++ YRL M+  + S+ NL + Q EVA
Sbjct: 67  GGIMGEVTDAVGIQFRLLNTSRGPAVWSPRAQCDKQQYRLKMREVLESEPNLKIKQAEVA 126

Query: 126 GFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
               E            I   I ++D   +    VV+TTGTFL G+IH G+ + PAGR G
Sbjct: 127 DLIVEDVSDPTHPERMKIARGIKLRDGRTVGALAVVITTGTFLNGLIHCGEEQYPAGRSG 186

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  S  L  S  K      RLKTGTP RLDG++I W K   Q  D    PFSF T KIT 
Sbjct: 187 EPASVLLGESLKKMGLRGCRLKTGTPPRLDGRSIDWSKFAVQPGDAEPTPFSFRTKKITQ 246

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C I  T  ETH++I EN+  S +YSG I+S GPRYCPSIEDKIV+F ++  HQIFL
Sbjct: 247 KQVPCYIAHTTPETHQLIRENVHRSPMYSGQIQSTGPRYCPSIEDKIVKFPDKETHQIFL 306

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGLNT  VY NG+ST+LP ++Q + + +I GLE   ++RPGYAIEYD I+P EL  TL
Sbjct: 307 EPEGLNTYEVYVNGMSTSLPIDVQLRMVHSIVGLENAEMLRPGYAIEYDSIDPTELQRTL 366

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETKKI  L+L GQINGT+GYEEAA QGL+AGIN+A        +   RT++Y  ++IDDL
Sbjct: 367 ETKKIGSLYLGGQINGTSGYEEAACQGLMAGINAALAVKHEPPLVLDRTEAYTAILIDDL 426

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFL 474
            SKG  EPYRMFTSRAE+R+ LR DNAD RLTP G ++G I  E      AK  +     
Sbjct: 427 ISKGTNEPYRMFTSRAEFRLHLRIDNADRRLTPHGRRVGLIKDEAWHAHLAKQQRMDELK 486

Query: 475 RSLLKSLVLTSKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQ-----------NLFSIC 522
            +L K+ + TS+     +  F   DG   T  + L  P+  +              F   
Sbjct: 487 MTLEKTRIRTSELPVELAEKFGNIDGS--TVVQLLKRPESDVAAFEQIIRRVQPTFFERG 544

Query: 523 PDARKFSSLV---IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
              R+F S +   ++ ++ E  YA Y  +Q      +K  E+R+IP+ FDY+S+  LS E
Sbjct: 545 DSEREFVSDIRNELKAVETEIKYAGYLDQQTKAIDRLKRSEQRVIPEWFDYASVSGLSRE 604

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + EK+  ++P  + QAS+I G+TPAA++L+ +YI+
Sbjct: 605 MCEKMQRVRPQTIGQASRIPGVTPAAVSLINVYIE 639


>gi|116619160|ref|YP_821316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122256194|sp|Q02D35|MNMG_SOLUE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116222322|gb|ABJ81031.1| glucose inhibited division protein A [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 604

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/611 (45%), Positives = 384/611 (62%), Gaps = 24/611 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA   A++G  TA++T     I  MSCNPAIGG+ KGHLVREIDAL
Sbjct: 8   YDVVVIGAGHAGCEAARACARIGLRTAMVTMNLDLIAQMSCNPAIGGIAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG VAD+ GIQFR+LN  +GPAV  PR Q D++LYR  M+  + ++ NL + Q EVA
Sbjct: 68  GGVMGEVADSVGIQFRLLNTSRGPAVWSPRAQMDKKLYRFRMREVLEAEPNLRIKQAEVA 127

Query: 126 GFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +    ++ ++++D   I    V++TTGTFL G+ H+G++    GR G++PS  L +
Sbjct: 128 ALTFDAVRRVNGVLLRDGRTIPAGAVIVTTGTFLNGLAHVGEMTYSCGRNGEAPSQLLGD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                  +  RLKTGTP RLDG++I W   E Q  D    PFSF+T +I  +QI+C I  
Sbjct: 188 QLRSMGLNWTRLKTGTPPRLDGRSIDWSSFEPQAGDAEPTPFSFLTGRIERQQIQCHIGY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET R++ E I  S +YSG I+  GPRYCPSIEDK V+F ++  HQIFLEPEGL+T  
Sbjct: 248 TTDETRRVLQEAIPRSPLYSGQIEGVGPRYCPSIEDKFVKFPDKVRHQIFLEPEGLDTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NG+ST++P ++Q   + +IPGLE+  +IRPGYAIEYD I+P+EL  TLE K I GL+
Sbjct: 308 VYVNGMSTSMPTDVQVAMVASIPGLEQAEMIRPGYAIEYDAIDPRELNHTLEVKSIPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEA  QGL+AG+N+A      D +   RT+ Y G+++DDL +KG  EPY
Sbjct: 368 LAGQINGTSGYEEAGIQGLIAGLNAAMSLGGSDPVIIGRTEGYAGILVDDLITKGADEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLTP+G + G   + R + F +  +E   LR  L     T
Sbjct: 428 RMFTSRAEFRLHLRIDNADARLTPLGRRAGLATDERWELFQR--KERQKLR--LTQAFET 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--VIERLQIESSY 542
            KN                  + L  P+ SI +      +    +    ++E +  E+ Y
Sbjct: 484 HKN-----------------GQLLKRPEVSISDFLPWIVEVLGEAPCRGLLETVSTEAKY 526

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q  +   +K  E+R IP  F+Y  +P LS E+++KL  ++P  L QA ++ G+T
Sbjct: 527 GGYIQQQERQMARMKDSERRAIPHGFEYRGIPGLSREIQDKLDKVRPGTLGQAGRVPGVT 586

Query: 603 PAALNLLLIYI 613
           PAA+ +L  Y+
Sbjct: 587 PAAIAVLDCYL 597


>gi|320154847|ref|YP_004187226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus MO6-24/O]
 gi|319930159|gb|ADV85023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus MO6-24/O]
          Length = 632

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/623 (46%), Positives = 391/623 (62%), Gaps = 11/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQD------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-V 532
           S   T  N +ST I            +  +  + L  P+ + + L S+   A     L  
Sbjct: 482 S---TWMNPASTGIEELNQLLKSPMNREASGEDLLRRPEMTYEQLTSLAAFAPALDDLEA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L
Sbjct: 539 AEQVEIQVKYEGYIKRQQDEIEKSLRHEHTKLPVDLDYSEVKGLSNEVVLKLNTAKPETL 598

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
             AS+I G+TPAA+++LL+++KK
Sbjct: 599 GIASRISGITPAAISILLVHLKK 621


>gi|37681446|ref|NP_936055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus YJ016]
 gi|56749077|sp|Q7MGG9|MNMG_VIBVY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|37200198|dbj|BAC96026.1| glucose inhibited division protein A [Vibrio vulnificus YJ016]
          Length = 632

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/623 (46%), Positives = 392/623 (62%), Gaps = 11/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSL-V 532
           S   T  N +ST I    Q  KT      +  + L  P+ +   L S+   A     L  
Sbjct: 482 S---TWMNPASTGIDELNQLLKTPMNREASGEDLLRRPEMTYDQLTSLTAFAPAIDDLEA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L
Sbjct: 539 AEQVEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPETL 598

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
             AS+I G+TPAA+++LL+++KK
Sbjct: 599 GIASRISGITPAAISILLVHLKK 621


>gi|197286880|ref|YP_002152752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Proteus mirabilis HI4320]
 gi|238693206|sp|B4F0D8|MNMG_PROMH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|194684367|emb|CAR46005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis HI4320]
          Length = 632

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 393/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTTLENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++  V +     R   VVLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVENDQVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSQLAPQLGDNPMPVFSFLGNVDQHPEQMPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEQTHEIIRNNLERSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F++ ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDNRWAQFSEKVELVEKERQRLRDIWVH 486

Query: 485 SK--NLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQI 538
            K  NL   +   K    K     + L  P+ + + L  I    P          E+++I
Sbjct: 487 PKADNLEEINQLLKTPLSKEANGEDLLRRPEMTYEILKKIPRFAPGIDDSRPQAAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 547 QVKYEGYINRQQEEIEKQLRNESAALPIDIDYKQVSGLSNEVIAKLNDHKPTSIGQASRI 606

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA+++LL+++KK
Sbjct: 607 SGVTPAAISILLVWLKK 623


>gi|226947204|ref|YP_002802277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azotobacter vinelandii DJ]
 gi|226722131|gb|ACO81302.1| Glucose-inhibited division protein A, gidA [Azotobacter vinelandii
           DJ]
          Length = 631

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/620 (46%), Positives = 389/620 (62%), Gaps = 5/620 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALAAARMGVKTLLLSHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R QADR LY+  ++R + +Q NL + Q    
Sbjct: 68  GGAMARATDVAGIQFRVLNSRKGPAVRATRAQADRALYKAEIRRILENQPNLWIFQQSAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q     R   VVLT GTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEGEQVRGVVTQMGLKFRADNVVLTAGTFLGGLIHIGLENYSGGRAGDPPSQALARR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG++I +    +Q  D  +   SF+  +  + RQ+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSIDFSAMTEQPGDTPVPVMSFLGSREQHPRQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  
Sbjct: 248 TNARTHQIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQVFLEPEGLSTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + +R+I GLE  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 308 VYPNGISTSLPFDVQLEIVRSIRGLENAHIVRPGYAIEYDFFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGANAALRAQGREAWCPRRDEAYLGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEQGRELGLVDDARWAAFCAKREGIEREEQRLKTTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +++ +        Y     L+ P+    +L  +     +    V E+++I++ 
Sbjct: 488 PGTPQGKAVAARFGSPLAREYNLLNLLARPEVDYASLVELTGGGAE-DEQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P++ DY+S+  LS E++ KL   +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASESVRLPENLDYASISGLSKEIQHKLGQGRPQTLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPAA++LLLI++KK     N
Sbjct: 607 TPAAISLLLIHLKKRDAGRN 626


>gi|254522439|ref|ZP_05134494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas sp. SKA14]
 gi|219720030|gb|EED38555.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas sp. SKA14]
          Length = 629

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 386/618 (62%), Gaps = 11/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  Q NL V Q  V 
Sbjct: 68  GGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGQANLTVFQAAVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L   
Sbjct: 128 DLVIEGDAVRGVITQTGLRFDAEAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + +Q+ C IT 
Sbjct: 188 LRERPFQVDRLKTGTPPRIDGRSLDYSVMDEQPGDTPRPVMSFLGSVDEHPQQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL    
Sbjct: 248 TTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGIVE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++GLF
Sbjct: 308 IYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP G ++G + +RR   F          R+ L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADQRLTPAGREMGLVDDRRWSAFETKQAAVAAERARLGALWAT 487

Query: 485 SKNLSSTSISFKQD------GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQ 537
             N     +   QD       +     + +  P+     L  +       +   V E+++
Sbjct: 488 PANALGREV---QDTLGVAVSRETNVLDLIKRPELDYAQLMQVPSLGPAVADGKVAEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  + QA +
Sbjct: 545 IGVKYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTIGQAQR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I GMTPAA++LLL+++++
Sbjct: 605 IPGMTPAAISLLLVHLER 622


>gi|327482902|gb|AEA86212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas stutzeri DSM 4166]
          Length = 630

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/621 (46%), Positives = 393/621 (63%), Gaps = 13/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAVATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRELLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+N +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQNEVRGVVTQMGLRFLATSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ + +  +Q  D  L   SF+  +  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSQMTEQPGDTPLPVMSFLGSREQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIYRFADKDSHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYLGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCAKREGIEREEQRLKNSWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSIC----PDARKFSSLVIERLQ 537
                  +I+ +        Y     L+ P+   Q+L  +     PD +     V E+++
Sbjct: 487 PGTPQGDAIAERFGSPLAREYNLLNLLARPEIDYQSLIELTGPGEPDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E ++++  E   +P D DY+++  LS E++ KL   +P  L QAS+
Sbjct: 542 IKTKYAGYIERQQDEIEKLRASENVALPADLDYATISGLSKEIQHKLGQARPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LL+I++KK + 
Sbjct: 602 IPGVTPAAVSLLMIHLKKRSA 622


>gi|167036428|ref|YP_001671659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida GB-1]
 gi|189039352|sp|B0KRB9|MNMG_PSEPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166862916|gb|ABZ01324.1| glucose inhibited division protein A [Pseudomonas putida GB-1]
          Length = 630

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 386/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +I  K        Y     L+ P+     L             V E+++I +
Sbjct: 486 RPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DYS++  LS E++ KL   +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTRLPVDIDYSTISGLSKEIQGKLGQTRPETLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 605 VTPAAISLLLIHLKK 619


>gi|290473125|ref|YP_003465986.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus bovienii SS-2004]
 gi|289172419|emb|CBJ79186.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus bovienii SS-2004]
          Length = 629

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/619 (47%), Positives = 400/619 (64%), Gaps = 13/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQSNLMIFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I+ +V +     +  +VVLT GTFL G IHIG      GR GD P+ +L + 
Sbjct: 127 DLIVENNTITGVVTRMGLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIALSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI + + E+Q  D     FSFM +   + RQI C IT 
Sbjct: 187 LRELPLRVARLKTGTPPRIDARTIDFSQLEQQLGDNPTPVFSFMGNVDQHPRQIPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARYAADENGWFPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + ++R + + + ++     R  L+++ + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDQRWEHYCRKVEMIEQERQRLRNIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-----RL 536
             S +L   +   K    K     + L  P+ + + L S+     +F+  + E     ++
Sbjct: 487 PHSDSLDEINQMLKAPLSKEANGEDLLRRPEMNYELLTSLP----RFTPGLTEPQAADQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 543 EIQVKYEGYIARQQEEIEKQLRNENAALPLDLDYKQVNGLSNEVIAKLNDHKPSSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+++LL+++KK
Sbjct: 603 RISGITPAAISILLVWLKK 621


>gi|190576265|ref|YP_001974110.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas maltophilia K279a]
 gi|190014187|emb|CAQ47831.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme GidA [Stenotrophomonas maltophilia K279a]
          Length = 629

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/623 (46%), Positives = 388/623 (62%), Gaps = 21/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  Q+NL V Q  V 
Sbjct: 68  GGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGQDNLTVFQAAVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L   
Sbjct: 128 DLVIEGDAVRGVITQTGLRFDAGAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + +Q+ C IT 
Sbjct: 188 LRERPFQVDRLKTGTPPRIDGRSLDYGVMDEQPGDSPRPVMSFLGSVDEHPQQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL    
Sbjct: 248 TTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGIVE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++GLF
Sbjct: 308 IYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP G ++G + + R   F          R+ L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADQRLTPAGREMGLVDDHRWSAFETKQAAVAAERARLGALWAT 487

Query: 485 SKNLSSTSISFKQD------GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLV 532
             N     +   QD       +     + +  P+     L  +        DA+     V
Sbjct: 488 PANALGREV---QDTLGVAVSRETNVLDLIKRPELDYAQLMQVPSLGPAVADAK-----V 539

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I   YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  +
Sbjct: 540 AEQVEIGVKYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTI 599

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA +I GMTPAA++LLL+++++
Sbjct: 600 GQAQRIPGMTPAAISLLLVHLER 622


>gi|149190485|ref|ZP_01868756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio shilonii AK1]
 gi|148835739|gb|EDL52705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio shilonii AK1]
          Length = 631

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/625 (46%), Positives = 393/625 (62%), Gaps = 15/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V +        +VVLT GTFL G IHIG      GRMGD PS 
Sbjct: 122 QQSVDDLIVEQDQVRGVVTEMGLKFHSRSVVLTVGTFLGGKIHIGMESSSGGRMGDQPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D +++ +   E Q  D     FSFM ++  +  QI 
Sbjct: 182 ALAARLRELPFRVDRLKTGTPPRIDARSVDFSALEVQHGDNPTPVFSFMGNRNQHPTQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNESTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT     LG I E+R  RF + +      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEHAHNLGLIDEKRWSRFNEKLNNMATERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +  K+        L  + IS +  G+       L+Y   +  + F+   + ++ S  
Sbjct: 482 ETWVNPKSEGIEALNVLLKSPISREASGEDLLRRPELNYSQLTSLDAFAPAMEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
             E+++I+  Y  Y  RQ  E AK ++ E  + IP D DYS +  LSNE+  KL+  KP 
Sbjct: 540 --EQVEIQVKYEGYIQRQQDEIAKSLRHENTK-IPADLDYSDVKGLSNEVVAKLTEAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            +  AS+I G+TPAA+++LL+Y+KK
Sbjct: 597 TVGIASRISGITPAAISILLVYLKK 621


>gi|92115410|ref|YP_575338.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chromohalobacter salexigens DSM 3043]
 gi|122419017|sp|Q1QSB9|MNMG_CHRSD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91798500|gb|ABE60639.1| glucose inhibited division protein A [Chromohalobacter salexigens
           DSM 3043]
          Length = 631

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/614 (46%), Positives = 385/614 (62%), Gaps = 7/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAHATDLGGIQFRVLNARKGPAVRATRAQADRVRYKAAIRGMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q    +   +VVL TGTFL GVIHIG      GR GD PSN+L   
Sbjct: 127 DLIVENDTVRGVVTQTGIRVFGESVVLCTGTFLGGVIHIGLDHHAGGRAGDPPSNALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP RLD K++ +   E Q  D+     S++  +  + RQ+ C I  
Sbjct: 187 LRALPFHVDRLKTGTPPRLDAKSVDFSVLETQPGDDPTPVMSYLGRRDQHPRQVACHIAH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I   GPRYCPSIEDK+ RF +++ HQIF+EPEGL+T  
Sbjct: 247 TNARTHEIIHANLDRSPMYSGVIGGVGPRYCPSIEDKVNRFADKSSHQIFVEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P++L  +LETK I  LF
Sbjct: 307 LYPNGISTSLPFDVQFEVVRSIKGFENAHITRPGYAIEYDFFDPRDLKHSLETKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR++   D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARRAQGQDAWSPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT IG +LG + + R   F+   +        L+   + 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTEIGRELGLVDDTRWAHFSTKREAIARETERLRETWVQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  +  +S K D      Y   + L  P+    N   +  DA +    V E++QI++ 
Sbjct: 487 PSSELAKRLSGKLDKPLAREYRLADLLKRPEL---NHADLADDAPELDPAVAEQVQIQAK 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E   ++  E   +P+D DY+ +  LS+E+++KL   +P  L QA +I G+
Sbjct: 544 YQGYIARQQDEIDRLRRHEALRLPEDLDYARIDGLSHEIRQKLEAARPETLAQAGRISGV 603

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLL+++KK
Sbjct: 604 TPAAVSLLLVHLKK 617


>gi|146284513|ref|YP_001174666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas stutzeri A1501]
 gi|166222723|sp|A4VS73|MNMG_PSEU5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145572718|gb|ABP81824.1| glucose-inhibited division protein A [Pseudomonas stutzeri A1501]
          Length = 630

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/621 (46%), Positives = 393/621 (63%), Gaps = 13/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAVATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRELLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+N +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQNEVRGVVTQMGLRFLATSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ + +  +Q  D  L   SF+  +  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSQMTEQPGDTPLPVMSFLGSREQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYLGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCAKREGIEREEQRLKNSWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSIC----PDARKFSSLVIERLQ 537
                  +I+ +        Y     L+ P+   Q+L  +     PD +     V E+++
Sbjct: 487 PGTPQGDAIAERFGSPLAREYNLLNLLARPEIDYQSLIELTGPGEPDPQ-----VAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E ++++  E   +P D DY+++  LS E++ KL   +P  L QAS+
Sbjct: 542 IKTKYAGYIERQQDEIEKLRASENVALPADLDYATISGLSKEIQHKLGQARPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LL+I++KK + 
Sbjct: 602 IPGVTPAAVSLLMIHLKKRSA 622


>gi|169612247|ref|XP_001799541.1| hypothetical protein SNOG_09242 [Phaeosphaeria nodorum SN15]
 gi|160702466|gb|EAT83434.2| hypothetical protein SNOG_09242 [Phaeosphaeria nodorum SN15]
          Length = 691

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/624 (46%), Positives = 400/624 (64%), Gaps = 15/624 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIVIGGGHAGCEA+A AA+ GA TALIT K   +G  SCNP+ GG+GKG ++REI
Sbjct: 36  SQPYDVIVIGGGHAGCEASAAAARSGARTALITPKHDNLGVCSCNPSFGGIGKGTMLREI 95

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG++GR+ D AG QFRVLN KKGPAV GPR Q DR LY+  M+ E+L+ E L V++G
Sbjct: 96  DALDGVVGRIVDKAGTQFRVLNRKKGPAVWGPRAQIDRSLYKKYMKEEMLNYEGLSVLEG 155

Query: 123 EVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            VA          G       I+ + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 156 SVADIIVDQTQEEGVKGRYGRITGVRLESGEIIPTGNVVITTGTFLGGEIHIGLDAYPSG 215

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S     F  GRLKTGTP RLDGK+I +   + Q  D+  +PFS++ ++
Sbjct: 216 RMGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDGKSINFKTLDAQEGDQPPMPFSYLNER 275

Query: 233 I-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +   +Q+    TRTN  TH +I  N+  S      +K  GPRYCPS+E K++RF ++  H
Sbjct: 276 VQVEQQLLNHETRTNEATHDVIRNNLDKSIHIRETVK--GPRYCPSLESKVIRFTDKTSH 333

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            I+LEPEG + DV+YPNGIS  +P ++Q + ++T+ GLE VN+++PGY +EYDY++P+ L
Sbjct: 334 IIWLEPEGFDNDVIYPNGISCTVPADVQIEMLKTVRGLENVNMLQPGYGVEYDYVDPRHL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S     +  +R D YIG+M
Sbjct: 394 RSTLETKNISGLFLAGQINGTTGYEEAAGQGVIAGINAGLRSLNKPAMILTRADGYIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +   R   F++   + 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRMSARADNADTRLTAKGHTAGVVRSPRWTAFSRDAADM 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
             L SLL+   L   + +    + + D   R+AY+ L  P  +  +L SI P    FS  
Sbjct: 514 AELTSLLQEKTLGWSDWNKHGFAVRNDSTKRSAYDLLRLPSTTPSSLTSILPQIANFSPR 573

Query: 532 VIERLQIESSYAAYTGRQMI-EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           + +R+ IES+YA Y   Q + +A+ +K E  RL P D  Y ++  LS E K  L + +P 
Sbjct: 574 IQDRVHIESTYAPYVAYQSVSQARWLKDEHLRL-PDDLSYEAIFGLSYEEKRALEVARPE 632

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
           ++ QA ++EG+TP     LL ++K
Sbjct: 633 SVGQARRVEGVTPTGALRLLQFVK 656


>gi|330935619|ref|XP_003305052.1| hypothetical protein PTT_17795 [Pyrenophora teres f. teres 0-1]
 gi|311318085|gb|EFQ86844.1| hypothetical protein PTT_17795 [Pyrenophora teres f. teres 0-1]
          Length = 692

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/623 (46%), Positives = 399/623 (64%), Gaps = 15/623 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIVIGGGHAGCEA+A AA+ GA TALIT     +G  SCNP+ GG+GKG ++REID
Sbjct: 39  RPYDVIVIGGGHAGCEASAAAARSGARTALITPSVHNLGVCSCNPSFGGIGKGTMIREID 98

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M++EIL  + L V+QG 
Sbjct: 99  ALDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKEYMKKEILGYKGLSVVQGS 158

Query: 124 VA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA          G   +   I+ + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 159 VADIIVDRSQEKGSKGQYGRITGVRLESGEIIPTENVVITTGTFLGGEIHIGLEAYPSGR 218

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S     F  GRLKTGTP RLDG TI +   E Q  D   +PFS++ +++
Sbjct: 219 MGEAATFGLSKSLKDAGFTLGRLKTGTPPRLDGNTIDYKVLEAQEGDNPPMPFSYLNERV 278

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +Q+    TRTN  TH II +N+  S      +K  GPRYCPS+E K++RF ++  H 
Sbjct: 279 QVEKQLLNHETRTNEATHDIIRQNLDKSIHIRETVK--GPRYCPSLESKVIRFADKTSHI 336

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           I+LEPEG N +VVYPNGIS  +P ++Q+  ++TI GLE V +++PGY +EYDY++P+ L 
Sbjct: 337 IWLEPEGFNNNVVYPNGISCTVPADVQNTMLKTIKGLENVTMLQPGYGVEYDYVDPRHLR 396

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S   + +  +R D YIG+MI
Sbjct: 397 STLETKNISGLFLAGQINGTTGYEEAAGQGIIAGINAGLRSLGKEPMTLTRADGYIGIMI 456

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+EYR+S R DNAD RLT +G   G I + R K F+   ++  
Sbjct: 457 DDLITKGVSEPYRMFTSRSEYRMSARADNADVRLTSLGRAAGVISDARWKAFSDEAEQME 516

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            L  LL+   +   + +      + D   R+AY+ L  P+ + Q+L  +  +   F   +
Sbjct: 517 ALTKLLQDKTMGWTDWNKHGFKVRNDSTKRSAYDLLRLPNTTPQSLLPLIAEISCFPQHI 576

Query: 533 IERLQIESSYAAYTGRQMI-EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            +R+ I ++YA Y   Q + +A+ +K E  +L P D DY S+  LS E K  L + +P +
Sbjct: 577 QDRVHINATYAPYVEYQAVSQARWLKDENLKL-PDDLDYESIFGLSFEEKRALEVARPES 635

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           +  A ++EG+TP     LL Y++
Sbjct: 636 VGMARRVEGVTPTGALRLLQYVR 658


>gi|77166531|ref|YP_345056.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani ATCC 19707]
 gi|254436296|ref|ZP_05049803.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani AFC27]
 gi|123593188|sp|Q3J6M0|MNMG_NITOC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76884845|gb|ABA59526.1| Glucose-inhibited division protein A subfamily [Nitrosococcus
           oceani ATCC 19707]
 gi|207089407|gb|EDZ66679.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani AFC27]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/619 (47%), Positives = 400/619 (64%), Gaps = 12/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIVVGGGHAGTEAALAAARQGVRTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM + AD AGI FR+LN +KGPAVR  R QADR LY+  +++ +  Q  L + Q  V
Sbjct: 66  LGGLMAQAADQAGIHFRMLNARKGPAVRATRAQADRALYKAVVRKALEQQSCLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  Q         VVLT GTFL G IH+G      GR GD P+N L +
Sbjct: 126 TDLVVKGERVVGVRTQLGLTFYAPAVVLTVGTFLGGRIHVGLTNHEGGRAGDPPANILSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+ + +   +Q+ C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDDPVPVFSFLGSAEDHPQQVSCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTNL TH II  ++  S IYSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTNLCTHEIIRASLDRSPIYSGEIEGIGPRYCPSIEDKVVRFSDKASHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EIYPNGISTSLPFDVQVALVRSIQGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+N+  +  + +     R ++YIGV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLIAGLNAGLQVQEKEPWYPRRDEAYIGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQEYNFLRSLLKS 480
           YRMFTSRAEYR+ LR DNAD RLTPIG +L  + E R +RF    K I+  N  + L++ 
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPIGRELRVVDEVRWRRFNTKWKAIEREN--QRLVQQ 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +   K     +++   +   R  Y   E L  P  S + L  +  +       V E++ 
Sbjct: 484 RIEPDKVSEGEAVTLLGE-PLRREYRLIELLRRPHISYEKLMRLIGEPMAVEPAVAEQIA 542

Query: 538 IESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           I++ YA Y  RQ +E A++ + E  RL P D +Y  +  LS E++EKL+ ++P  L QA+
Sbjct: 543 IQAKYAGYIERQQLEIARQQRHESLRL-PLDLNYHQVRGLSVEVQEKLARVQPATLGQAT 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LLL+Y+K+
Sbjct: 602 RIPGVTPAAISLLLVYLKR 620


>gi|326314883|ref|YP_004232555.1| glucose inhibited division protein A [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371719|gb|ADX43988.1| glucose inhibited division protein A [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 655

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/641 (46%), Positives = 398/641 (62%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM +   +
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGTLPVFSFMGNTAMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQIF
Sbjct: 245 PRQVPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP ++Q+  +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDVQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV++DD
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGESAWLPRRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++        
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRKRDAVARE 484

Query: 475 RSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              LKS  +  +NL    S  +  K        ++ L  PD + + L  +  D  K++S 
Sbjct: 485 TERLKSTWVNPRNLPAEESARVLGKSIEHEYNLFDLLRRPDVTYEALTGM--DGGKYAST 542

Query: 532 -------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                        VIE+++I + YA Y  RQ  E +     E   +P++ DY  + ALS 
Sbjct: 543 AVSRETLGELSAPVIEQVEIAAKYAGYIDRQKDEVQRASHYENLQLPQELDYMQVAALSI 602

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   +
Sbjct: 603 EVRQKLQKHRPETLGQASRISGVTPAAVSLLLVHLKKGGFR 643


>gi|227354887|ref|ZP_03839302.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis ATCC 29906]
 gi|227165040|gb|EEI49876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis ATCC 29906]
          Length = 632

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 392/617 (63%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTTLENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++  V +     R   VVLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVENDQVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSQLAPQLGDNPMPVFSFLGNVDQHPEQMPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEQTHEIIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F++ ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDNRWAQFSEKVELVEKERQRLRDIWVH 486

Query: 485 SK--NLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQI 538
            K  NL   +   K    K     + L  P+ + + L  I    P          E+++I
Sbjct: 487 PKADNLEEINQLLKTPLSKEANGEDLLRRPEMTYEILKKIPRFAPGIDDSRPQAAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 547 QVKYEGYINRQQEEIEKQLRNESAALPIDIDYKQVSGLSNEVIAKLNDHKPTSIGQASRI 606

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA+++LL+++KK
Sbjct: 607 SGVTPAAISILLVWLKK 623


>gi|269103813|ref|ZP_06156510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163711|gb|EEZ42207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/622 (47%), Positives = 392/622 (63%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM R  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGLMARAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREALENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +   V +     R   VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 TDLIVEQDRVVGAVTEMGLKFRAKAVVLTVGTFLGGRIHIGLENYNGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D +T+ +   EKQF D     FSFM  +  + RQI C IT
Sbjct: 186 RLRELPFRVSRLKTGTPPRIDARTVDFSVLEKQFGDNPTPVFSFMGKQSDHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T 
Sbjct: 246 HTNERTHDVIRNNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK ++GL
Sbjct: 306 ELYPNGISTSLPFDVQMQIVRSMKGFENADIVRPGYAIEYDFFDPRDLKQTFETKFMAGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A  +   D     R  +Y+GV+IDDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGMNAALCAQGKDGWSPRRDQAYMGVLIDDLSTIGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G + G + + R  RF + I+     R  LK + +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEMGRQFGLVDDERWARFNQKIENMEQERQRLKDIWI 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
              +        +  T I  +  G+     + L  P+ +   L +I         +   E
Sbjct: 486 NPNSAQVDELNKILKTPIVREASGE-----DLLRRPEVTYDMLTAIETFGPALEDTQASE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    EK  +P D DYS +  LSNE+  KL+  KP  +  
Sbjct: 541 QVEIQVKYQGYIDRQKDEVEKSLRHEKTKLPFDLDYSVVKGLSNEVIAKLNDAKPETVGM 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA++LLL+Y+KK 
Sbjct: 601 ASRISGVTPAAISLLLVYLKKQ 622


>gi|90413743|ref|ZP_01221731.1| glucose-inhibited division protein A [Photobacterium profundum
           3TCK]
 gi|90325212|gb|EAS41709.1| glucose-inhibited division protein A [Photobacterium profundum
           3TCK]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/626 (46%), Positives = 397/626 (63%), Gaps = 23/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREALENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +V +     R ++VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 DDLIVENDRVIGVVTEMGLKFRATSVVLTVGTFLGGKIHIGLENYSGGRAGDPPSIALAS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D +T+ + + + Q  D  +  FSFM     + RQI C IT
Sbjct: 186 RLRELPFRVDRLKTGTPPRIDARTVDFSRLQAQHGDNPIPTFSFMGKTSDHPRQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T 
Sbjct: 246 YTNEKTHDVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQIQIVRSMDGFENAAIMRPGYAIEYDFFDPRDLKQTFETKFIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A +S   +  C  R  +Y+GV+IDDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGMNAALQSQGKEGWCPRRDQAYMGVLIDDLSTMGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDDRWARFNQKVENIEQERQRLKDIWI 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-- 533
              +        +  T I+ + +G+     + L  P+ +    + +      FS   I  
Sbjct: 486 NPNSDHVDEINKILKTPIAREANGE-----DLLRRPEIT----YKLLTQLEDFSPAHIDT 536

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++ +  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP 
Sbjct: 537 QASEQVETQVKYQGYIDRQKDEVEKSLRHETTKLPFDLDYSIVKGLSNEVIAKLTDAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA++LLL+Y+KK+
Sbjct: 597 TIGMASRISGITPAAISLLLVYLKKH 622


>gi|119471638|ref|ZP_01614023.1| glucose-inhibited division protein A [Alteromonadales bacterium
           TW-7]
 gi|119445417|gb|EAW26704.1| glucose-inhibited division protein A [Alteromonadales bacterium
           TW-7]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/621 (46%), Positives = 400/621 (64%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENYKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D +T+ + K ++Q  D     FSF+  +  + +QI 
Sbjct: 182 ALAQRLREQPFRVDRLKTGTPPRIDARTVDFSKMQEQPGDAPTPVFSFLGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSITGFENAHICRPGYAIEYDYFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    D     R ++Y+GV+IDDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKDSWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEIIEKEKQRIK 481

Query: 480 SLVLTSKNLSSTSI-SFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
              +   +     + +  +   TR A   E L  P+    +L +I     +F++   +E+
Sbjct: 482 DTWIHKDHTVVDQVNALLKAPLTREASLEELLRRPEIRYDDLMAIEGLGSEFTNKAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEETILPKEFDYKTVSGLSNEVVAKLEESRPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA++LLL+Y+KK 
Sbjct: 602 SRISGITPAAISLLLVYLKKQ 622


>gi|15600758|ref|NP_254252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PAO1]
 gi|21263691|sp|Q9HT09|MNMG_PSEAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9951906|gb|AAG08950.1|AE004968_4 glucose-inhibited division protein A [Pseudomonas aeruginosa PAO1]
          Length = 630

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/614 (47%), Positives = 383/614 (62%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +        Y     LS P+     L  I  +A   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGNAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEISRLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LLLI++KK
Sbjct: 606 TPAAISLLLIHLKK 619


>gi|308051498|ref|YP_003915064.1| glucose inhibited division protein A [Ferrimonas balearica DSM
           9799]
 gi|307633688|gb|ADN77990.1| glucose inhibited division protein A [Ferrimonas balearica DSM
           9799]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/616 (45%), Positives = 393/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  +A+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   YDVIVVGGGHAGTEAALASARTGARTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFR LN  KGPAVR  R QADR LYR A+Q+ + +Q NL + Q  V 
Sbjct: 67  GGAMARATDRAGIQFRTLNASKGPAVRATRAQADRALYRQAIQQILFNQPNLQIFQQGVN 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ ++           VVLT GTFL G IHIG      GR+GD+ +  L + 
Sbjct: 127 DLILEGDKVTGVITDAGIHFGAEAVVLTVGTFLDGKIHIGLDNYAGGRIGDTNAVRLAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTPARLD +++ +   ++Q  D     FS++ D+    RQI C IT 
Sbjct: 187 LRELPLRIDRLKTGTPARLDARSLDFSVMQEQPGDNPTPVFSYIGDRSEQPRQISCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDK++RF ++  HQIF+EPEGLN+  
Sbjct: 247 TNERTHEIIRSGLDRSPMYTGVIEGIGPRYCPSVEDKVMRFADKTSHQIFVEPEGLNSIE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+  I+RPGYAIEYD+ +P++L  +LE+K + GLF
Sbjct: 307 IYPNGISTSLPFDVQLELVRSIKGFEQARILRPGYAIEYDFFDPRDLKASLESKFLEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+AR+    +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAARRVRGEESWAPRRDQAYLGVLVDDLSTLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT +G ++G I + R  +F   ++     R  L+S  + 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTEMGREMGLIDDERWAKFNAKVEAIELERQRLRSTWVQ 486

Query: 485 SKNLSSTSIS-FKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
             + ++ +++   +   TR A   + L  P+ +   + ++             E+++I+ 
Sbjct: 487 KDSAAAAALNPLLKSPMTREANLEDLLRRPELTYDQIMAVEDLGPALDHEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E ++ +  E+ L+P D DY  +  LSNE+  KL   KP  L  AS+I G
Sbjct: 547 KYAGYIERQKDEIEKARRHEQTLLPLDLDYRQVKGLSNEVMAKLMEHKPETLGSASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+Y+KK+
Sbjct: 607 VTPAAISLLLVYLKKH 622


>gi|212637844|ref|YP_002314369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella piezotolerans WP3]
 gi|226704797|sp|B8CVV6|MNMG_SHEPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|212559328|gb|ACJ31782.1| Glucose-inhibited division protein A subfamily [Shewanella
           piezotolerans WP3]
          Length = 629

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 384/620 (61%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L + 
Sbjct: 127 DLVVENETVVGVVTQMGLAFEAPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + K  +Q  D+ L   SF+ D   +  Q+ C IT 
Sbjct: 187 LQELPIRVGRLKTGTPPRIDANTIDFSKMTEQKGDDPLPVMSFIGDVNQHPEQVSCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGLNT  
Sbjct: 247 TNERTHDIIRAGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKNSHQIFIEPEGLNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQIQGKETWCPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F+  ++        L+S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDERWAKFSDKMESIETELQRLRSQWIH 486

Query: 485 SKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVIER 535
            ++  +   +   K    +  T  + L  P+     L SI        D R       E+
Sbjct: 487 PRSPLVDVLNPHLKTPIAREATFEDLLRRPELDYPTLMSIDGFGPGIDDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQDEIDKAIRHETTGLPLDLDYQEVPGLSNEVIAKMNEHKPETVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++KK
Sbjct: 602 SRISGMTPAAISILLVHLKK 621


>gi|1780760|emb|CAA71459.1| unnamed protein product [Coxiella burnetii]
          Length = 627

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/620 (47%), Positives = 398/620 (64%), Gaps = 9/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI +GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIAVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +    + RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYYQLIEQPSDQPLPLMSYWSHGEDHPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN H++FLEPEG+N
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHRLFLEPEGIN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q   I +  GL K +I RPGY IEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGLSTSLSFDVQLDVIHSKTGLAKCHITRPGYTIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSIS--FKQ-DGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIER 535
            +  K+  + +I   F+Q   +  +A + L  P+ +   L  I    P   + S  V E+
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPS--VAEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QA
Sbjct: 543 IDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LLL+++KK
Sbjct: 603 SRIPGITPAAISLLLVHLKK 622


>gi|239993739|ref|ZP_04714263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii ATCC 27126]
          Length = 633

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 393/619 (63%), Gaps = 9/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++GA+T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   AFDVIVVGGGHAGTEAALAAARMGANTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V
Sbjct: 66  LGGAMALAIDKGGIQFRTLNSSKGPAVRATRAQADRTLYKNAIRDIVENQENLTLFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +V Q     +  +VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 DDLIVENDQVCGVVTQMGLKFKAKSVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIALAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   RLKTGTPARLD +++ +   + Q  D     FSFM D+  +  QI C IT
Sbjct: 186 RLRALPFRVDRLKTGTPARLDARSLDFSVMQPQPGDNPTPVFSFMGDRTMHPTQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLN+ 
Sbjct: 246 HTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKTSHQIFVEPEGLNSI 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   +R+I G E  +I+RPGYAIEYD+ +P++L  TLETK I GL
Sbjct: 306 EVYPNGISTSLPFDVQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLETKFIRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGLVAG N+A +  + D +   R  +Y+GV+IDDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLVAGANAALQVQEKDPMILRRDQAYMGVLIDDLATMGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R  +F   ++        L+   +
Sbjct: 426 YRMFTSRAEYRLLLREDNADSRLTAMGREIGLVDDARWAKFNDKMEAVESELQRLRGQWI 485

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQ 537
              + ++  ++        +  +  E +  P+ +   L    S+ P       +  E+++
Sbjct: 486 HPDHAATPELNTMLKNPVSREHSLEELIRRPEMTYGQLMEIESVGPGLE--DPVAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQM E  + +  E  L+P D D+S +  LSNE+  KL+  +P  + +AS+
Sbjct: 544 IQIKYAGYIARQMDEIAKTQRHENTLLPVDMDFSKISGLSNEVVAKLTEARPETIGKASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+Y+KK+
Sbjct: 604 ISGITPAAISLLLVYLKKH 622


>gi|32490750|ref|NP_871004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|31340132|sp|Q8D3K0|MNMG_WIGBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25165956|dbj|BAC24147.1| gidA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 628

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 308/633 (48%), Positives = 412/633 (65%), Gaps = 24/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  D+I++GGGHAG EAAAVAAK+  +T LIT    TIG MSCNP+IGG+GKGHLV+EID
Sbjct: 6   KEIDIIIVGGGHAGTEAAAVAAKMKCNTMLITQNIDTIGQMSCNPSIGGIGKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G+MG  AD +GIQFR LN  KGPAVR  R Q DR+LY   +Q+ + +Q+NL ++Q E
Sbjct: 66  AMGGIMGIAADNSGIQFRTLNSSKGPAVRATRAQIDRKLYSSLIQKILSNQKNLYLLQQE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     EKN I  +V     +I+   V++TTGTFL G IHIG  +  +GR G+  S  L 
Sbjct: 126 VIDILVEKNKIKGVVTNAGLIIKSKIVIITTGTFLNGKIHIGNKQYVSGRSGEFSSIKLS 185

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECG 241
                KF F   RLKTGTP R+D K++ + K E Q+ D  +  FSFM    I  +Q+ C 
Sbjct: 186 QILKEKFCFRINRLKTGTPPRIDLKSVNFSKLESQYGDTPIPQFSFMKFVGIRPKQLPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II++NIKHS IY+G IK  GPRYCPSIEDK+VRF ++  HQIFLEPEGLN
Sbjct: 246 ITYTNKNTHNIIIDNIKHSPIYNGSIKGIGPRYCPSIEDKVVRFSKKESHQIFLEPEGLN 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q + IR+I GLE  NI RPGY+IEYD+++P++L  TLE+K IS
Sbjct: 306 NYEIYPNGISTSLPLNLQIKIIRSIKGLESANITRPGYSIEYDFLDPRDLKLTLESKIIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL++GIN+A            R+ +Y+GV+IDDL + G  
Sbjct: 366 GLFFAGQINGTTGYEEAAAQGLLSGINAALMLKNGSFWFPKRSQAYLGVLIDDLCTLGTK 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+E+R+ +R DNAD RLT IG KLG I + R   F      YN    + K +
Sbjct: 426 EPYRMFTSRSEHRLIIREDNADLRLTEIGRKLGIIEDDRWNNF------YNKKNIIYKEI 479

Query: 482 VLTSKNLSSTSISFKQDGKTR-----------TAYEFLSYPDFSIQNLFSICPDARKFSS 530
               KNL +T I F ++ K +           TA E L  P+ +  +L       RK   
Sbjct: 480 ----KNLKNTKILFNKEEKNKINLNINKSGSITAEEILRRPEITYNDLICYNFIKRKLKD 535

Query: 531 -LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +I++++I+  YA Y  RQ  E  +  + +  ++P + ++  +  LS E+ EKL+I KP
Sbjct: 536 EEIIKQIEIQIKYAGYIKRQEKEINKKTYYDNIILPNEINFKKISGLSKEVIEKLNIFKP 595

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            ++ QA KI G+TPAA++++LI++KKN +  N+
Sbjct: 596 TSIGQAIKISGITPAAISIILIWLKKNNLMYNK 628


>gi|254788523|ref|YP_003075952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Teredinibacter turnerae T7901]
 gi|259495854|sp|C5BKL4|MNMG_TERTT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|237684306|gb|ACR11570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Teredinibacter turnerae T7901]
          Length = 630

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/614 (46%), Positives = 388/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA   AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEACLAAARMGCKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAKATDKGGIQFRVLNNRKGPAVRATRAQADRVLYKAAVREILENQPNLTIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q        TVVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLVVEGETVRGVVTQMGVTFLAPTVVLTAGTFLGGRIHIGLENHSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +++ +D  ++Q+ D+     SF+  +  + RQ  C +T 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARSVNFDGLDEQWGDKPTPVMSFLGSQDDHPRQTCCWVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II      S +++G I+  GPRYCPSIEDK+ RF ++N HQIF+EPEGL T  
Sbjct: 247 TNERTHDIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKNSHQIFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R+I G E  +I+RPGYAIEYD+ NP++L  +LETK ISGLF
Sbjct: 307 LYPNGISTSLPFDIQLALVRSIKGFENAHIVRPGYAIEYDFFNPQDLQYSLETKVISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A K+   +  C  R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALKAQGKEPWCPERDQAYMGVLVDDLITMGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F +  ++       ++S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDIRWAAFCEKREQIEQETQRMRSTWVQ 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + +  +  ++ K        Y   + L  P+ +  +L  +  +A   +  V E+++I + 
Sbjct: 487 ANSAEALQLADKLTAPLNREYSLLDLLKRPELTYADLGHLKGEAVA-NVQVAEQVEITAK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   IP  FDY S+  LSNELK+KL+  +P N+ +AS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRQHENTPIPASFDYDSVEGLSNELKQKLNEARPDNIARASRIPGI 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA++LL+IY+KK
Sbjct: 606 TPAAISLLVIYLKK 619


>gi|205831546|sp|A4GAI2|MNMG_HERAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193222447|emb|CAL63519.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Herminiimonas
           arsenicoxydans]
          Length = 645

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/627 (47%), Positives = 397/627 (63%), Gaps = 14/627 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G ST L+TH   T+G MSCNP+IGG+GKGHLVRE+DA+
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQSTLLLTHNIETLGQMSCNPSIGGIGKGHLVREVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSRLENQPNLWLFQQGVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG     AGR GD P+ SL   
Sbjct: 127 DLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIHIGMNNYSAGRAGDPPAISLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG++I +    +Q  D   IP FS M    +  +Q+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDPIPVFSVMGSVAMHPQQMPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDKIHRFAGKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   ++++ GLE  +I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 307 EYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAIEYDYFDPRGLKATLETKVIQGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+A +  + D     R ++Y+GV++DDL ++GVLEP
Sbjct: 367 FFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTPRRDEAYLGVLVDDLITQGVLEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLK 479
           YRMFTSRAEYR+SLR DNAD RLT +G +LGC+G+ +   F        +E   LRS   
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQWALFETKREAVARELERLRSTWV 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSS------LV 532
           S  + ++   +  +  K   +     + L  P+ + + L S+   D +           V
Sbjct: 487 SPRILAEA-EAERVLGKGIEREYALADLLRRPNVTYETLMSLKGMDGQDLGGPGVAEPAV 545

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E +     E   +P +FDY ++  LS E+++KL+  +P  L
Sbjct: 546 REQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYMAVKGLSIEVRQKLTKQRPETL 605

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVK 619
            QAS+I G+TPAA++L+L+++KK   K
Sbjct: 606 GQASRISGVTPAAISLMLVHLKKGGFK 632


>gi|226327001|ref|ZP_03802519.1| hypothetical protein PROPEN_00861 [Proteus penneri ATCC 35198]
 gi|225204838|gb|EEG87192.1| hypothetical protein PROPEN_00861 [Proteus penneri ATCC 35198]
          Length = 633

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 395/616 (64%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTTLENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++  V +     R  +VVLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVENDQVTGAVTRMGLKFRAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSQLAVQLGDTPMPVFSFLGNVDQHPEQMPCHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R   F++ ++     R  L+++ + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDTRWAEFSEKVELVEKERQRLRNIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSLVIERLQI 538
             + NLS  +   K    K     + L  P+ +   ++N+    P          E+++I
Sbjct: 487 PQADNLSEINELLKTPLSKEANGEDLLRRPEMTYNILKNISRFAPGIDDSKPQAAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++ +  E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 547 QVKYEGYISRQQEEIEKKQRNENAALPIDLDYKQVSGLSNEVIAKLNDHKPTSIGQASRI 606

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+++LL+++K
Sbjct: 607 SGVTPAAISILLVWLK 622


>gi|164428879|ref|XP_956189.2| hypothetical protein NCU11170 [Neurospora crassa OR74A]
 gi|157072320|gb|EAA26953.2| hypothetical protein NCU11170 [Neurospora crassa OR74A]
          Length = 717

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/629 (46%), Positives = 393/629 (62%), Gaps = 14/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPFDVVVIGGGHAGSEACAAAARAGARTALVTPSVENLGVCSCNPSFGGIGKGIMIREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GRV D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ E+ S  NL ++   
Sbjct: 100 ALDGLAGRVIDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKKHMRAELESYPNLSLVYNS 159

Query: 124 VAGF---------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+           N  ++ I+ + ++   ++  S V++TTGTFL G IHIG    P+GRM
Sbjct: 160 VSDIVVSENDNPSNGARSKITGVRLESGEVLPTSQVIITTGTFLGGEIHIGMEAYPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  S  +  F  GRLKTGTP RLD K+I ++  EKQ+ D+   PFS++ + + 
Sbjct: 220 GEKATFGLSKSLREAGFKLGRLKTGTPPRLDKKSINFNILEKQYGDDPPNPFSYLNEAVA 279

Query: 235 NR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            + Q+ C  T TN  TH I+  N+  +      +K  GPRYCPS+E KI+RF E+  H +
Sbjct: 280 VKDQLHCWATYTNHATHEIVRANLDKTIHIRETVK--GPRYCPSLESKIIRFSEKERHLV 337

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG + D++YPNG+S  +P E Q   +RTIPGLE V + +PGY +EYDY++P+ L  
Sbjct: 338 WLEPEGFDNDIIYPNGLSMTVPAEAQLALLRTIPGLEDVIMTQPGYGVEYDYVDPRSLKR 397

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I GL+LAGQINGTTGYEEAA QG+VAGIN+ R +  L+ +  SR D YIGVMID
Sbjct: 398 TLETKAIRGLWLAGQINGTTGYEEAAGQGIVAGINAGRAATGLEPVTLSRADGYIGVMID 457

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+E+R++ R DNAD+RLT +G   G +G+RR   F     +   
Sbjct: 458 DLITKGVSEPYRMFTSRSEFRMTTRSDNADSRLTALGRNWGVVGDRRWSHFQDENGQMAE 517

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF--SICPDARKFSSL 531
           LR +L   +L+ +   +     K D + R+A E L +   SI+ L+   + P    FS  
Sbjct: 518 LRRILSETILSPQAWQNAGFDVKADSRRRSALEILCFKGASIEKLYESGVVPKLMDFSER 577

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V ER  IE  YA    +  +E    + EE   +P D DY  + +LS   K  L   +P +
Sbjct: 578 VRERTFIEGLYAPQIEKHELERARFEREEDLRLPLDLDYDQIASLSLAEKGVLKATRPES 637

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           L QA +IEG+TPA    LL Y+K+    L
Sbjct: 638 LAQARRIEGITPAGCMRLLAYVKRRNGDL 666


>gi|327395840|dbj|BAK13262.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pantoea ananatis AJ13355]
          Length = 629

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 389/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAGAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                    RLKTGTP R+D ++I +     Q  D  +  FSFM +   + +Q+ C +T 
Sbjct: 187 LRALPLRVDRLKTGTPPRIDARSIDFSVLAPQHGDNPMPVFSFMGNAGQHPQQVPCWMTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKLTLESKFIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            K+    +  +I+     K  +A + L  P+ +   L ++       +     E+++I+ 
Sbjct: 487 PKSEHVEAVNTITSSPLTKEASAEDLLRRPEMTYLKLMALDAFGPALADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 607 VTPAAISILLIYLKKQ 622


>gi|300721123|ref|YP_003710391.1| glucose-inhibited division oxidoreductase-like protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627608|emb|CBJ88127.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus nematophila ATCC
           19061]
          Length = 618

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/612 (47%), Positives = 395/612 (64%), Gaps = 5/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V + +   +  +VVLT GTFL G IHIG      GR GD P+ SL + 
Sbjct: 127 DLIVENNTVTGVVTRMSLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D ++I + + E+Q  D     FSFM +   + +QI C IT 
Sbjct: 187 LRELPLRVARLKTGTPPRIDARSIDFSQLEQQLGDNPTPVFSFMGNAAQHPQQILCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRSNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P+ L  TLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRGLKQTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARYATGEEGWFPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R K +++ ++     R  L+++ + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEQGRRLGLVDDLRWKHYSRKVEMIEQERQRLRNIWVH 486

Query: 484 -TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
             S NL   +   K    K     + L  P+ + + L S+   A   + +   ++++I+ 
Sbjct: 487 PHSDNLGDINQMLKTPLSKEANGEDLLRRPEMNYELLTSLSRFAPGLTEAQAADQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKQLRNENTALPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIY 612
           +TPAA+++LL++
Sbjct: 607 ITPAAISILLVW 618


>gi|78486514|ref|YP_392439.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thiomicrospira crunogena XCL-2]
 gi|123554882|sp|Q31DK8|MNMG_THICR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78364800|gb|ABB42765.1| glucose inhibited division protein A [Thiomicrospira crunogena
           XCL-2]
          Length = 633

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 390/618 (63%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+T    T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 7   NFDVIVVGGGHAGTEAALAAARMGVRTLLLTDNIDTLGQMSCNPAIGGIGKGHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D +GIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 67  LGGAMAMAIDESGIQFRTLNASKGPAVRATRAQADRVLYRQAIRMRLENQVNLTIFQQSV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +     +         VVLT GTFL G IHIG      GR GD+PSN L  
Sbjct: 127 EDLILEGDKVVGAETKMGLKFYAHQVVLTAGTFLAGRIHIGLQNYEGGRAGDAPSNRLAA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+D +T+ ++  + Q  D+ +  FS+M    +   Q+ C IT
Sbjct: 187 KLRELALPVGRLKTGTPPRIDARTVDFEAMQMQPGDDPMPVFSYMGKVSMHPEQMPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TN +TH  I +++  S +YS  G+I S GPRYCPSIEDK++RF ERN HQ+F+EPEGL 
Sbjct: 247 YTNEQTHDFIRDSLDQSPMYSDAGEIDSVGPRYCPSIEDKVMRFSERNQHQVFIEPEGLT 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +YPNGIST+LP E Q Q ++++ GLE   I+RPGYAIEYDY +P+ L PTLET+ I 
Sbjct: 307 SNELYPNGISTSLPFETQMQIVQSMKGLENARIMRPGYAIEYDYFDPRGLRPTLETQAIH 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+AR++   +     R ++YIGV++DDL + G  
Sbjct: 367 GLYFAGQINGTTGYEEAAAQGLLAGMNAARRAQMKEQWYPRRDEAYIGVLVDDLITLGTS 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG + G + + R   F   ++      + LK  
Sbjct: 427 EPYRMFTSRAEYRLMLREDNADQRLTAIGREFGLVDDARWLSFEGKMETMEAELARLKQT 486

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +  K+  +       D    K +T ++ L  P+ S   L ++       +   V+E+++
Sbjct: 487 WIHPKHAEAKKAEALMDLPLSKEQTLFDLLKRPNVSYDALATMDMFGNAVTDPTVVEQIE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  RQ  +  +++  E   IP   D   +  LSNE+K+KL   KP  L  AS+
Sbjct: 547 IEAKYAGYIARQQEDIDKLRRAENVEIPDALDLDKISGLSNEVKQKLRDHKPATLGMASR 606

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LLLIYIKK
Sbjct: 607 ISGITPAAVSLLLIYIKK 624


>gi|170724367|ref|YP_001752055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida W619]
 gi|205375707|sp|B1JFV2|MNMG_PSEPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169762370|gb|ACA75686.1| glucose inhibited division protein A [Pseudomonas putida W619]
          Length = 630

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/615 (47%), Positives = 386/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM +   + RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAAMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRESWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   ++  K        Y     L+ P+     L        +    V E+++I++
Sbjct: 486 RPNTPQGQAVVDKFGTPLSHEYSLLNLLARPEVDYAGLIE-ATGGEQIDPQVAEQVEIKT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+S+  LS E++ KL   +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTCLPVDIDYTSISGLSKEIQGKLGQTRPQTLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 605 VTPAAISLLLIHLKK 619


>gi|301058100|ref|ZP_07199152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [delta proteobacterium NaphS2]
 gi|300447732|gb|EFK11445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [delta proteobacterium NaphS2]
          Length = 621

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/621 (47%), Positives = 395/621 (63%), Gaps = 13/621 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+G GHAGCEAA  AA++G  T L+T     + +MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKQYDVIVVGAGHAGCEAALAAARMGHPTLLLTINLDHVAAMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M + AD  GIQFR LN +KG AV+G R+Q DR+LYR  M++ + S  NLD+ Q 
Sbjct: 65  DALGGEMAKNADQTGIQFRRLNTRKGLAVQGSRSQNDRDLYRKRMKQVVESTPNLDIRQA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +   I  I  + +  +   TVVLT+GTFLRG++HIG     AGRMGD  S  L
Sbjct: 125 MVDRLLVKGEKIYGIETRIHEKVLGRTVVLTSGTFLRGLVHIGLDHFEAGRMGDPASVRL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                   F+ GRLKTGT  RL+G+TI +D    Q  DE   PFSF T KI   Q+ C +
Sbjct: 185 SEQLEALGFEVGRLKTGTTPRLNGRTIDYDGLAVQPGDENPKPFSFTTTKIPLPQVPCHM 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II E +  S ++SG I+  G RYCPSIEDK+VRF E+  HQIFLEPEGL+T
Sbjct: 245 TYTNAKTHDIIREGLDRSPLFSGIIEGTGARYCPSIEDKVVRFSEKERHQIFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNG+ T+LP +IQ + +R+IPGLEK  I+RPGYAIEYDYINP EL P  ETK+++G
Sbjct: 305 FEVYPNGLPTSLPLDIQIRMVRSIPGLEKAEILRPGYAIEYDYINPLELLPNQETKRVAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAAAQGL+AGIN+ +K      +  SR ++Y GV+IDDL +KG  E
Sbjct: 365 LFHAGQINGTSGYEEAAAQGLLAGINAVKKVRGEAPVILSRAEAYAGVLIDDLVTKGTRE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL  +G +LG + +     F +   +   L   LK++ 
Sbjct: 425 PYRMFTSRAEFRLLLREDNADFRLRDLGYELGLVSKDVYADFCRKRDQVWKLLQRLKAVQ 484

Query: 483 LTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L          K L +  I      K  T  + L   +   ++L    P     +  V  
Sbjct: 485 LKPRPGILDQLKALKTAPIK-----KATTLEQLLKRSEIYFEHLHLFDPALADENESVSM 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ +  Y  Y  RQ  + +++K  E + IP+  DY ++  LSNE++EKL  ++P +L Q
Sbjct: 540 EVETQIKYDGYIERQKRQVEKLKHLESKKIPRGIDYETVHGLSNEVREKLGKIRPLSLGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A++I G+TPAA++ + +++K+
Sbjct: 600 AARISGVTPAAISAIQVHLKR 620


>gi|239813064|ref|YP_002941974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Variovorax paradoxus S110]
 gi|259495856|sp|C5CW10|MNMG_VARPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|239799641|gb|ACS16708.1| glucose inhibited division protein A [Variovorax paradoxus S110]
          Length = 652

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 300/630 (47%), Positives = 397/630 (63%), Gaps = 18/630 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLSLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIAFRARTVVLTAGTFLDGRIHVGLDNYQAGRAGDPPAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER------LIPFSFM-TDKITNRQI 238
             +     GRLKTGTP RLDG++I + K  +Q  D        +  FSFM    +  +Q+
Sbjct: 187 LKELKLPQGRLKTGTPPRLDGRSIDFSKCTEQAGDGMPGGAGPMPVFSFMGRADMHPQQM 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQIFLEPE
Sbjct: 247 PCWITHTNARTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP +IQ+Q +R++PGLE  +I+RPGYAIEYDY +P+EL  + ET+
Sbjct: 307 GLTTNEYYPNGISTSLPFDIQYQLVRSMPGLENAHILRPGYAIEYDYFDPRELKSSFETR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL AGIN+A +    +     R ++Y+GV++DDL +K
Sbjct: 367 SIKGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEEAWLPRRDEAYLGVLVDDLITK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+ LR DNAD RLT  G KLG + + R   F++     +     L
Sbjct: 427 GVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRKLGLVDDARWDAFSRKRDTVSRETERL 486

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS----- 530
           KS+ +  +NL    S  +  K         + L  PD + + L S+  D  K+S+     
Sbjct: 487 KSIWVNPRNLPAAESERVLGKAIEHEYNLADLLRRPDVNYETLMSL--DGGKYSAGSPLS 544

Query: 531 -LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            + IE+++I + Y+ Y  RQ  E +     E   +P DFDYS + ALS E+++KL   +P
Sbjct: 545 EIEIEQIEISAKYSGYIERQHDEVERAAHFENLRLPADFDYSQVKALSFEVRQKLDKHRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             L  AS+I G+TPAA++LL+I+++K   K
Sbjct: 605 ETLGLASRISGVTPAAISLLMIHLRKGGHK 634


>gi|85712598|ref|ZP_01043645.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina baltica OS145]
 gi|85693589|gb|EAQ31540.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina baltica OS145]
          Length = 631

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/619 (47%), Positives = 399/619 (64%), Gaps = 7/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 7   QTYDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M + AD AGIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q  
Sbjct: 67  ALGGIMAKAADKAGIQFRTLNSSKGPAVRATRAQADRQLYKQAIRYALETQPNLTLFQQG 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + ++ +V Q         VVLT GTFL G IHIG      GR GD P+N+L 
Sbjct: 127 CDDLIVENDQVTGVVTQMGLKFHARAVVLTVGTFLGGRIHIGLDNYQGGRAGDPPANALS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
                      RLKTGTP R+   +I +   ++Q  D     FS++  +  + +QI C I
Sbjct: 187 QRLRALPLRVDRLKTGTPPRIASHSIDFSVMQEQPGDTPTPVFSYLGSRADHPQQIPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I   +  S +YSG+I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLNT
Sbjct: 247 THTNEQTHDVIRSGLDRSPMYSGEIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLNT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q Q +++I G E   I RPGYAIEYDY +P++L  +LETK I+G
Sbjct: 307 FEVYPNGISTSLPFDVQQQLVQSIRGFENAVITRPGYAIEYDYFDPRDLKQSLETKVING 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+AR +   +     R  +Y+GV+IDDL++ G  E
Sbjct: 367 LFFAGQINGTTGYEEAGAQGLIAGLNAARLAQDKETWSPRRDQAYMGVLIDDLSTLGTQE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F   ++     +  L+S  
Sbjct: 427 PYRMFTSRAEYRLLLREDNADIRLTETGRELGLVDDERWQAFNLKMEAIEQEKQRLRSTW 486

Query: 483 LTSKNLSSTSI-SFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQI 538
           +   +    SI +F +   T+  +  E L  P+ + Q L      A   S S   E+++I
Sbjct: 487 VHKDHPEIDSINAFVKSPITKEVSGEELLRRPEVNYQQLVKTPFFAPGLSDSAAAEQVEI 546

Query: 539 ESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           ++ YA Y  RQ  E AK+ + E  RL P  FDY+S+  LSNE+  KL+  +P  + +A++
Sbjct: 547 QTKYAGYISRQQDEIAKQQRHENTRL-PNQFDYTSIKGLSNEVIAKLNQHQPETVGKAAR 605

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK 
Sbjct: 606 ISGITPAAISMLLVHLKKQ 624


>gi|50289417|ref|XP_447140.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526449|emb|CAG60073.1| unnamed protein product [Candida glabrata]
          Length = 663

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/612 (47%), Positives = 394/612 (64%), Gaps = 13/612 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAGCEAA  AA+ GA T L+T     IG+ SCNP+IGG+GKG L++E+DAL
Sbjct: 37  HDVVVIGGGHAGCEAATAAARSGARTVLVTPFLDKIGTCSCNPSIGGVGKGTLIKEVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ GRV D AGI F++LN  KG AV GPR Q DR LY   MQ  + +  NL + + +V 
Sbjct: 97  DGVAGRVTDKAGIHFKMLNQSKGAAVWGPRAQIDRNLYLKEMQSILSNYPNLQLQEAKVK 156

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                  + +K ++  +V++D++++R   VV+TTGTFL   IHIG   IPAGR+G+ P+ 
Sbjct: 157 DLLLDKEHGDKTVVHGVVLEDSTIMRTRKVVITTGTFLSAEIHIGMKCIPAGRIGEEPTY 216

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIE 239
            L  +  +  F  GRLKTGTPARLDGKTI +   EKQ+ DE   P SF+ + +    Q+ 
Sbjct: 217 GLSKTLKEIGFKLGRLKTGTPARLDGKTIDFSNLEKQYPDEVPHPMSFLNNNVAVETQLL 276

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C  T T  E H  + +N+  S      IK  GPRYCPSIE KI+RF ++  H+I+LE EG
Sbjct: 277 CYGTTTTPELHEYLRQNLDKSLHIRETIK--GPRYCPSIEAKILRFADKQSHKIWLESEG 334

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+TDV+YPNGIS ++PE++Q + +R +PGLE V II P Y +EYDYI P +L   LETK 
Sbjct: 335 LDTDVIYPNGISNSMPEDVQLKMMRMVPGLENVRIIHPAYGVEYDYIEPTQLNHNLETKL 394

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GL+LAGQINGTTGYEEA AQG++AG N+   S   D I  SR+D+YIGV+IDDL + G
Sbjct: 395 VNGLYLAGQINGTTGYEEACAQGVIAGANAGLSSKNRDQIILSRSDAYIGVLIDDLVTNG 454

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V+EPYRMFTSR+E+RI+ R +NAD RLTPIG K G + + R  RF      +   ++ LK
Sbjct: 455 VVEPYRMFTSRSEFRITTRAENADFRLTPIGRKYGIVDDTRWSRFNNDKHIFEKFKTKLK 514

Query: 480 SLVLT-SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSLVIE 534
           +  L+ SK      I      K RTA+E   Y D +++ L    P    D     + V  
Sbjct: 515 NFDLSASKWNQKLGIRIADSAKNRTAWEVFRYNDITLRYLAVKIPELDIDINAIPNHVSL 574

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +L +E  Y  Y  +Q    +  + +E+ L+PK FDYS++P LS+E K  L+ ++P  + Q
Sbjct: 575 KLDVEGKYEPYIVKQNQFVRAFQADEQMLLPKKFDYSNIPTLSSECKMLLNSIQPNTIGQ 634

Query: 595 ASKIEGMTPAAL 606
           A +I+G+T AAL
Sbjct: 635 ARRIQGVTAAAL 646


>gi|325275323|ref|ZP_08141276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas sp. TJI-51]
 gi|324099571|gb|EGB97464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas sp. TJI-51]
          Length = 630

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/615 (47%), Positives = 385/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L +
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +I  K        Y     L+ P+     L             V E+++I +
Sbjct: 486 RPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIE-ATGGEAIDPQVAEQVEIRT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QAS+I G
Sbjct: 545 KYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLGQTRPETLGQASRIPG 604

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLLI++KK
Sbjct: 605 VTPAAISLLLIHLKK 619


>gi|89074717|ref|ZP_01161175.1| glucose-inhibited division protein A [Photobacterium sp. SKA34]
 gi|89049481|gb|EAR55042.1| glucose-inhibited division protein A [Photobacterium sp. SKA34]
          Length = 629

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRVLYKAAVRNVLENQENLMIFQQAVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +    +V +         VVLT GTFL G IHIG      GR GD  SN+L + 
Sbjct: 127 DLIVENHRAVGVVTEMGLKFHAKAVVLTVGTFLGGKIHIGMENYSGGRTGDPASNALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +++ +   E+Q  D     FSFM     + RQI C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARSVDFSVLEEQHGDNPTPTFSFMGKSSDHPRQIPCFITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T+ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T E K I GLF
Sbjct: 307 LYPNGISTSLPFDVQMQIVRSMQGFENASIMRPGYAIEYDFFDPRDLKQTFENKYIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A +    D     R  +Y+GV+IDDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLMAGMNAALQVQDKDGWSPRRDQAYMGVLIDDLSTIGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP+G + G + + R  RF + I+     R  LK + + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTPMGREFGLVDDARWSRFNQKIENMELERQRLKDIWIN 486

Query: 485 SKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            K+     ++   K    +  +  + L  P+ + + L SI   A         E+++I+ 
Sbjct: 487 PKSDHVDELNKILKAPIAREASGEDLLRRPEVTYEQLTSIETFAPALDDREAREQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E   +P D DYS++  LSNE+  KL+  KP ++  AS+I G
Sbjct: 547 KYQGYIDRQRDEVEKSLRHETTKLPFDIDYSNVKGLSNEVVAKLNDAKPESIGMASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+Y+KK+
Sbjct: 607 ITPAAISLLLVYLKKH 622


>gi|260774973|ref|ZP_05883873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609063|gb|EEX35222.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 631

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/623 (46%), Positives = 389/623 (62%), Gaps = 9/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSQLEAQHGDNPTPVFSFMGQRTQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNDQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LNTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   D     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKDGWSPRRDQAYVGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEQARELGLIDDLRWARFNEKIDNMTKERQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKFS-SLVI 533
              +  K  S    +  Q  KT    E      L  P+ + Q L  +   A   +     
Sbjct: 482 DTWMNPK--SQGIDALNQLLKTPMVREASGEDLLRRPEMTYQQLTELEAFAPALADQQAA 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E ++    E   +P D DY+++  LSNE+  KL+  KP ++ 
Sbjct: 540 EQVEIQVKYEGYIKRQQDEIEKSLRHEHTHLPLDMDYANVKGLSNEVVAKLNESKPESIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
            AS+I G+TPAA+++LL+++KK 
Sbjct: 600 IASRISGITPAAISILLVHLKKQ 622


>gi|203284099|ref|YP_002221839.1| glucose inhibited division protein A [Borrelia duttonii Ly]
 gi|201083542|gb|ACH93133.1| glucose inhibited division protein A [Borrelia duttonii Ly]
          Length = 626

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/624 (46%), Positives = 403/624 (64%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +D IVIGGGHAG EA+   A+L   T LIT    T+G +SCNPAIGGL KG++VRE
Sbjct: 5   IGMDFDAIVIGGGHAGIEASLALARLNFKTILITQNLDTVGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  KGPAV+ PR QAD+ +Y++  +  +  Q NL++ Q
Sbjct: 65  IDALGGEMGCLIDFSMIQFRILNKSKGPAVQAPRAQADKLVYQIKAKETLEMQNNLELFQ 124

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+ F  N  KN I  +V +  +      VVLTTGTFLRG I IG+ K   GR+ +  +
Sbjct: 125 DTVSDFLLNPMKNKIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYKAYMGRISEPAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  F+ GRLKTGTPAR+  ++I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 185 FGLEKILLELGFEMGRLKTGTPARVHRRSINFAKTEIQFGDSDIIPFSFSNTKIDKTQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           +NT  +Y NG+S++LPE++Q + I +I GLE   I RPGYA+EYDYINP EL+ +LETK+
Sbjct: 305 INTQEMYLNGLSSSLPEDVQKRLINSIDGLEDAVITRPGYAVEYDYINPIELYASLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A K  K D +   RT SYIGV+IDDL +KG
Sbjct: 365 VEGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQKKDPMILPRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQIEEIKELLR 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  K  SS  +   +    +  Y  +  P  ++++L +I P     S +++E+++++
Sbjct: 485 HRRLKEKEASSFEL---KRHINKDFYHIVKDPYINLKDLVNIDPKLNA-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DF+Y  +  LS E +EK   ++P NL QAS++ 
Sbjct: 541 IKYEGYINRQKDLIRKMNNLELIKLPLDFNY-EIDGLSREAREKFVKIQPANLAQASRVS 599

Query: 600 GMTPAALNLLLIYIK--KNTVKLN 621
           G+    + +LLIY    KN V LN
Sbjct: 600 GVRNTDIQVLLIYFSNPKNKVVLN 623


>gi|254184036|ref|ZP_04890627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1655]
 gi|184214568|gb|EDU11611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1655]
          Length = 657

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|296533443|ref|ZP_06896026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseomonas cervicalis ATCC 49957]
 gi|296266223|gb|EFH12265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseomonas cervicalis ATCC 49957]
          Length = 623

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 307/619 (49%), Positives = 413/619 (66%), Gaps = 6/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   S+DV+VIGGGHAG EAAA AA+ GA T L+TH+  T+G MSCNPAIGG+GKGHLVR
Sbjct: 1   MRENSFDVVVIGGGHAGTEAAAAAARCGARTLLLTHRIETLGEMSCNPAIGGVGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDGL+GR AD AGI F++LN  KGPAVRGPR QADR LYR A+Q  + +Q  L  +
Sbjct: 61  EVDALDGLIGRAADLAGIHFKLLNRSKGPAVRGPRAQADRALYRRAIQSLLAAQPGL-TL 119

Query: 121 QGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           + E AG   E++    I +++ +  + I C   ++TTGTFLRG IHIG+ + PAGR+GD+
Sbjct: 120 RAEAAG-GLERDASGRIVAVLTESGTRIACGAAIITTGTFLRGEIHIGETRQPAGRVGDA 178

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           PS  L  +         RLKTGTP RLDG+TI W   E Q  DE   P S+MT++I N Q
Sbjct: 179 PSIGLALALEALGLPMRRLKTGTPPRLDGRTIDWAGLEMQPGDEAPEPLSWMTERIANPQ 238

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           ++CGIT T  E H +I  N+  + I+SG I+  GPRYCPSIEDKI RF  R  HQIFLEP
Sbjct: 239 VQCGITATTPEGHALIRANLHRAPIHSGQIQGAGPRYCPSIEDKITRFAGRERHQIFLEP 298

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+   +YPNGIST+LPE++Q  FI TIPGLE+  I+R GYAIEYD+++P+ L PTLE 
Sbjct: 299 EGLDDPTIYPNGISTSLPEDVQRGFIATIPGLERAEILRLGYAIEYDHVDPRALRPTLEL 358

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI-CFSRTDSYIGVMIDDLT 416
           + + GLFLAGQINGTTGYEEAAAQGL+AG+N+A  +         +RT++Y+GVM+DDL 
Sbjct: 359 RAVPGLFLAGQINGTTGYEEAAAQGLLAGLNAAALAGGEAEGRVLARTEAYLGVMVDDLV 418

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            +GV EPYRM T+R+E+R++LR DNA  RLT  G+  G +G  R  RF  +        +
Sbjct: 419 LQGVTEPYRMLTARSEHRLALRADNAGLRLTEKGIAWGVVGPERAARFRAFAAGVADALA 478

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             ++   T   L S  I   QDG+ R+  E L+ PD   + +    P      + V  +L
Sbjct: 479 RARAEGGTPAALQSAGIPINQDGRWRSLLEVLALPDVPGEAVAQAFPWLNDLPAGVRAQL 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E+ YA Y  RQ  E + ++ +E++ IP+  D+ ++P LSNE+K++L   +P  L  A 
Sbjct: 539 EAEALYAPYLERQAAELRLLERDERQAIPRGLDFGAIPGLSNEMKQRLETARPETLGGAG 598

Query: 597 KIEGMTPAALNLLLIYIKK 615
           ++ G+TPAAL  L +++++
Sbjct: 599 RVPGITPAALAALAVHLRR 617


>gi|53802710|ref|YP_112542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylococcus capsulatus str. Bath]
 gi|81170556|sp|Q60CS5|MNMG_METCA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53756471|gb|AAU90762.1| glucose inhibited division protein A [Methylococcus capsulatus str.
           Bath]
          Length = 625

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/616 (46%), Positives = 391/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA T L+T    T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVVGGGHAGTEAALAAARTGARTLLLTQNVETLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R AD AGIQFR+LN  KGPAVR  R QADR LYR A++  + +QENL + Q  V 
Sbjct: 67  GGLMARAADRAGIQFRILNASKGPAVRATRAQADRSLYRKAVREGLSAQENLSLFQQTVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +V Q     R   VVLT GTFL G IHIG      GR GD P+  L   
Sbjct: 127 DLIVEGRRAAGVVTQMGLKFRSRCVVLTVGTFLAGRIHIGLENYDGGRAGDPPATDLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
                F   RLKTGTP R+D +++ + +  +Q  D+    FSF+ T +    Q+ C ITR
Sbjct: 187 LRDLGFKVARLKTGTPPRIDRRSVDFSRMAEQPGDDPTPVFSFLGTREEHPPQVSCYITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I   +  S +++G I+  GPRYCPSIEDK+VRF ER+ HQIF+EPEGL++  
Sbjct: 247 TNERTHELIRAGLDRSPMFTGVIEGIGPRYCPSIEDKVVRFAERDSHQIFVEPEGLDSLE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G E   I RPGYAIEYD+ +P++L  +LET+ +  LF
Sbjct: 307 IYPNGISTSLPFDVQLAVVRSIQGFEDARITRPGYAIEYDFFDPRDLRHSLETRHMENLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ARK+  L+     R ++Y+GV++DDL ++G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARKARDLEPWWPGRDEAYLGVLVDDLITRGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G  LG + + R   F    +    L + L +  + 
Sbjct: 427 RMFTSRAEYRLVLREDNADLRLTETGRALGLVDDARWSAFEAKREAIETLGARLAARRIR 486

Query: 484 --TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIES 540
             +S+  S  +++     +  +  E L  PD  ++++    PD        V E+++I +
Sbjct: 487 PDSSQAESWNALTEIPLQREASLLELLRRPDVGLEHIAGHAPDLFEGMDRAVREQVEIAA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E + ++  E   +P   DY  +  LS+E++EKL  ++P  + QA++I G
Sbjct: 547 KYTGYIERQQAEIERVRRYEAWQLPDSMDYGKVIGLSSEVREKLGRVRPATVGQAARIPG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+++++ 
Sbjct: 607 ITPAAISLLLVHLRRT 622


>gi|89898871|ref|YP_521342.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodoferax ferrireducens T118]
 gi|122477997|sp|Q21QL5|MNMG_RHOFD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89343608|gb|ABD67811.1| glucose inhibited division protein A [Rhodoferax ferrireducens
           T118]
          Length = 679

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/655 (45%), Positives = 411/655 (62%), Gaps = 41/655 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QHFDVIVVGGGHAGTEAALAAARMGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKAAIRRRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+  L 
Sbjct: 125 VDDLMVEGDRVVGAVTQAGIKFRAKTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVRLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIP-FSFMTDKITNR 236
               +     GRLKTGTP RLDG++I + K  +Q  D        ++P FSFM  ++   
Sbjct: 185 ARLKELKLPQGRLKTGTPPRLDGRSIDFSKCGEQPGDGMPGGMSPVMPVFSFM-GRVEQH 243

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQIF
Sbjct: 244 PPQMSCWTTHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSHQIF 303

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T+  YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P++L  +
Sbjct: 304 LEPEGLTTNEYYPNGISTSLPFDIQYALVRSMAGLENAHILRPGYAIEYDYFDPQQLKSS 363

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-----ARKSNKLDCICFSRTDSYIG 409
            ET+ I GLF AGQINGTTGYEEAAAQGL AG+N+     A+ S + +     R ++Y+G
Sbjct: 364 FETRAIGGLFFAGQINGTTGYEEAAAQGLFAGVNAALQAGAQTSWQQETWVPGRDEAYLG 423

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R + F++  +
Sbjct: 424 VLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTETGRRLGLVDDARWEAFSRKRE 483

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSI---- 521
             +     L+SL ++ KNL++T  S +  GK+     +  + L  PD +  NL S+    
Sbjct: 484 AVSRETERLRSLWVSPKNLTATE-SERVLGKSIEHEYSLADLLRRPDVNYANLMSLEGGK 542

Query: 522 -------CPDARK----------FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
                   P +R+          F+++VIE+++I + YA Y  RQ+ E       E   +
Sbjct: 543 YASAELNIPVSRETPAVPLPEAVFAAVVIEQVEIVAKYAGYIDRQIEEVGRAAHYENLKL 602

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P + DY  + ALS E ++KLS  +P  L QAS++ G+TPAA++LLL+++KK+  K
Sbjct: 603 PLELDYLQVSALSFEARQKLSKHRPETLGQASRLSGITPAAISLLLVHLKKSNFK 657


>gi|225850343|ref|YP_002730577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Persephonella marina EX-H1]
 gi|259495850|sp|C0QPI1|MNMG_PERMH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|225644818|gb|ACO03004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Persephonella marina EX-H1]
          Length = 623

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/621 (46%), Positives = 390/621 (62%), Gaps = 19/621 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAG EAA  +AKLG  TALIT     +G M CNPAIGG+ KG +VREIDA
Sbjct: 6   EYDVVVIGGGHAGIEAALASAKLGVKTALITLDKEKVGLMPCNPAIGGIAKGIVVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             G MG+  DA GIQF+ LN +KGPAVR PR QAD+E YR  M  ++L+ ENL VI+GE 
Sbjct: 66  FGGEMGKAIDATGIQFKTLNTRKGPAVRSPRAQADKEEYRKYMVNKVLNTENLTVIEGEA 125

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                +++   +  + +     IR  +VV+TTGTFL GVIHIG  +IPAGRM + PS  L
Sbjct: 126 TDIYLKESSYEVEGVEVDRRLKIRAKSVVVTTGTFLDGVIHIGDKRIPAGRMDEKPSTKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--------KIT 234
            + + K  F   R KTGTPARLD +TI +   E+   DE    FSF TD        K  
Sbjct: 186 PDFYRKLGFPLQRFKTGTPARLDKRTIDFSGLEEAPGDEPAPKFSFWTDPEHSYWFRKNQ 245

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             QI C IT T  ETHRII EN+  +A+Y G IK  GPRYCPSIEDKIV+F  +  H ++
Sbjct: 246 KEQIPCYITYTTPETHRIIRENLHRTALYGGAIKGIGPRYCPSIEDKIVKFENKERHTVW 305

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPE  N   +YPNG+ST+LPEE+Q +  R+IPGLE V +++P YAIEYD + P EL+PT
Sbjct: 306 LEPETKNGISIYPNGLSTSLPEEVQWEMYRSIPGLENVVLLKPAYAIEYDIVPPTELYPT 365

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK++ GL+ AG  NGTTGYEEAA QGLVAGIN+A ++   +     R ++YIGVMIDD
Sbjct: 366 LETKRVKGLYHAGNFNGTTGYEEAAGQGLVAGINAALRALGKEPFYIRRDEAYIGVMIDD 425

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT+KGV+EPYR+FTSR+EYR+ LR DN   RL      LG +   + K   +  +E    
Sbjct: 426 LTTKGVIEPYRLFTSRSEYRLHLRQDNPVLRLYRKAYNLGMLSYEQFKAVEEIEKEIGRW 485

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
             + ++            I  K + ++ +AY+ L  PD  +  L     +  + S  V E
Sbjct: 486 LDIYRN--------ERRKIVSKGETRSVSAYDLLKRPDIDVNKLKEYGFETPE-SDYVAE 536

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            + I   Y+ Y  R+    +++++ E   IP+D DYS +  L+ E+ +KL+  KP  L  
Sbjct: 537 EIDINVKYSGYFERERKMNEKMRYLENIKIPEDIDYSQIAGLTKEVVQKLTAAKPLTLGH 596

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A+++EG+TPAA+  ++I+++K
Sbjct: 597 AARLEGITPAAITAIMIHLQK 617


>gi|220936471|ref|YP_002515370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|254811521|sp|B8GRC9|MNMG_THISH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219997781|gb|ACL74383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 639

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/622 (46%), Positives = 393/622 (63%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAA  +A+ GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   SYDVIVVGGGHAGTEAALASARAGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM R AD  GI FR LN +KGPAVR  R QADR  Y+ A++  + +  +L + Q  V
Sbjct: 66  LGGLMARAADRGGIHFRTLNSRKGPAVRATRAQADRVRYKAAVRSVVENTPHLFLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ ++ Q     R   VVLT GTFL G IH+G+++   GR GD PS +L  
Sbjct: 126 DDLIVEGERVAGVITQTGLRFRSPAVVLTVGTFLGGRIHVGEVQHAGGRAGDPPSIALAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +     GRLKTGTP R+DG++I + +  +Q  D     FSF+  +  +  Q+ C I 
Sbjct: 186 RLRELAPRVGRLKTGTPPRIDGRSIDYAQLTEQPGDAPRPVFSFIGARDEHPPQVSCWIA 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF +++ HQ+F+EPEGL+T 
Sbjct: 246 RTTEHTHAIIRGALHRSPMYSGAIEGVGPRYCPSIEDKVVRFADKDSHQVFIEPEGLDTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q + +R+IPG E+ +I RPGYAIEYDY +P++L P+LET+ ++GL
Sbjct: 306 EVYPNGISTSLPFDVQFELVRSIPGFEQAHITRPGYAIEYDYFDPRDLKPSLETRCLAGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGLVAG+N+AR    L   C  R ++YIGV+IDDL ++G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLVAGLNAARSVRDLAPWCPRRDEAYIGVLIDDLITRGTAEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTP+G  +G + + R   F    +        L +  L
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTPLGRDMGLVDDARWAAFCTKREAVERETQRLAATRL 485

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVIE 534
             + +   +      G   + +   + L  P+     L  +        D R     V E
Sbjct: 486 DPERVDREAAERVIGGAFSREQNLLDLLRRPEVDYAALMGLEGAGPGVEDPR-----VAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + YA Y  RQ  E    +  E   +P+  DY+++  LS E+++KL+  +P  L Q
Sbjct: 541 QVEIGAKYAGYIQRQQDEVARQQRHENLALPEGLDYAAITGLSMEVRQKLAAHRPHTLGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           A++I G+TPAA++LLL+++K+ 
Sbjct: 601 AARIPGVTPAAVSLLLVHVKRQ 622


>gi|302390790|ref|YP_003826611.1| glucose inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
 gi|302201418|gb|ADL08988.1| glucose inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
          Length = 627

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/613 (46%), Positives = 387/613 (63%), Gaps = 5/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA  +A+LG  T +      +I  M CNP+IGG  KGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGCEAALASARLGMKTVVFAINLDSIALMPCNPSIGGPAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN KKGPAVR  R QAD++ Y+ +M+  +  Q+NLD++QGEV 
Sbjct: 68  GGEMGKNIDKTLIQMRLLNTKKGPAVRALRAQADKKAYQFSMKYTLEKQQNLDIVQGEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V +   +     V+LTTG +LRG I IG +    G  G  P+N L   
Sbjct: 128 RVLVEGGRVKGVVTKTGGVYYARAVILTTGVYLRGRIIIGDVSYSGGPNGLFPANELSKC 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F+ GR KTGTP R+   +I + K  +Q  DE +IPFS+ T+ I   QI C +T T
Sbjct: 188 LEALGFELGRFKTGTPPRVHRDSIDFSKMIEQPGDEVIIPFSYETESIKRPQISCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH II +N+  + +Y+GDIK  GPRYCPSIE KIV F E+  HQ+F+EPEG NT  +
Sbjct: 248 NEKTHEIIRKNLYRAPLYTGDIKGVGPRYCPSIEVKIVNFPEKESHQVFVEPEGENTCEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + +RTI GLE V ++RPGYAIEYDY+ P +L  TLETK+I GL++
Sbjct: 308 YLQGVSTSLPEDVQVELLRTIRGLENVKMMRPGYAIEYDYVIPTQLKLTLETKEIEGLYM 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL+AGIN+A K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGLIAGINAALKLKERESLVLGRSDAYIGVLIDDLVTKGTDEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSLLKSL 481
           M TSRAEYR+ LR DNAD RLT IG ++G I E R +RF K      +E   LRS  K  
Sbjct: 428 MLTSRAEYRLLLRHDNADMRLTEIGYRVGLISEERYERFLKKKKMIEEEIERLRS-TKIT 486

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                N +   I         T  + L  P+     L ++ P+  +    VIE+++I ++
Sbjct: 487 PTAEVNKALEEIGTAPLATPATLEDILKRPEIDYAALKALDPERPELPPEVIEQVEIMTA 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ+ + +  +  E + IP D DY  +  L  E +EKL  ++P ++ QAS+I G+
Sbjct: 547 YDGYIKRQLKQVENFRKMENKRIPDDIDYDKIHGLRTEAREKLKKIRPASIGQASRISGV 606

Query: 602 TPAALNLLLIYIK 614
            PA + +LLIY++
Sbjct: 607 NPADITILLIYLE 619


>gi|254186501|ref|ZP_04893018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934186|gb|EDO89856.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 657

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|332983462|ref|YP_004464903.1| glucose inhibited division protein A [Mahella australiensis 50-1
           BON]
 gi|332701140|gb|AEE98081.1| glucose inhibited division protein A [Mahella australiensis 50-1
           BON]
          Length = 624

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/618 (45%), Positives = 390/618 (63%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++G  T ++     +I  M+CNP+IGG  KGHLVREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARMGCKTLVVAINLDSIAMMACNPSIGGTSKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R Q D++ Y+  M++ +  Q+NLDV Q EV
Sbjct: 67  LGGQMGITTDKTAIQVRMLNTSKGPAVYSLRAQIDKKAYQAVMKQTLEQQDNLDVKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  +V    ++ R   V+LTTG +L G + IG++   +G  G  P+  L  
Sbjct: 127 VRLLVEEGAVRGVVTHTGAIYRAKAVILTTGVYLNGRVIIGEVSYSSGPNGMFPATHLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +       R KTGTPAR+ G++I + K   Q  DE  IPFSFM DK+  +Q+ C +T 
Sbjct: 187 DLLLLGIKLQRFKTGTPARVAGRSIDFSKMALQLGDEPPIPFSFMDDKLDAKQVPCHLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S ++SGDIK  GPRYCPSIEDK+VRF ++  HQIF+EPEGLNTD 
Sbjct: 247 TNERTHEIIRRNLHRSPLFSGDIKGVGPRYCPSIEDKVVRFADKPSHQIFIEPEGLNTDE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q + +R+I GLE V ++RP YAIEYD I+P +L  +LE K I GLF
Sbjct: 307 MYVQGMSSSLPEDVQIEMLRSIAGLEHVEVMRPAYAIEYDCIDPTQLKLSLEIKHIRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEAAAQG++AGIN+AR       +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGSSGYEEAAAQGIMAGINAARMVQGKPPVILDRSQAYIGVLIDDLVTKGTAEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RM TSRAEYR+ LR DNAD RLTPIG ++G  G  R +R+     +       LKS ++ 
Sbjct: 427 RMMTSRAEYRLLLRQDNADMRLTPIGYEIGLAGAERYERYLLKKDQVESELERLKSTIIA 486

Query: 484 --TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERLQI 538
             T  N     +S +      T Y+ L  P+ S   L  I  D  + S L+   IE+++I
Sbjct: 487 PDTEVNELLGKLSSQPIKTGVTLYDLLKRPEISYAALAPI--DKDRPSGLLQQAIEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQM++ +  K  E   +P D DY+++  L  E ++KL  ++P ++ QAS+I
Sbjct: 545 NVKYEGYIARQMMQIERFKKMEDHKLPDDIDYNAIKGLRIEARQKLDRIRPQSVGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKN 616
            G++PA +++LLIY+K++
Sbjct: 605 SGVSPADISVLLIYLKQH 622


>gi|53724003|ref|YP_104449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 23344]
 gi|121598310|ref|YP_994646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei SAVP1]
 gi|124385197|ref|YP_001027579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10229]
 gi|126449480|ref|YP_001082523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10247]
 gi|126451633|ref|YP_001068275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106a]
 gi|167001264|ref|ZP_02267063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei PRL-20]
 gi|167721836|ref|ZP_02405072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei DM98]
 gi|217423848|ref|ZP_03455348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 576]
 gi|238561559|ref|ZP_00441828.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei GB8 horse 4]
 gi|242316407|ref|ZP_04815423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106b]
 gi|254174970|ref|ZP_04881631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 10399]
 gi|254194591|ref|ZP_04901022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei S13]
 gi|254201525|ref|ZP_04907889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei FMH]
 gi|254206863|ref|ZP_04913214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei JHU]
 gi|254357415|ref|ZP_04973689.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei 2002721280]
 gi|81170532|sp|Q62FS8|MNMG_BURMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222914|sp|A3MQI7|MNMG_BURM7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222915|sp|A2S6L0|MNMG_BURM9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222916|sp|A1V8U3|MNMG_BURMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222917|sp|A3P104|MNMG_BURP0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52427426|gb|AAU48019.1| glucose-inhibited division protein A [Burkholderia mallei ATCC
           23344]
 gi|121227120|gb|ABM49638.1| glucose-inhibited division protein A [Burkholderia mallei SAVP1]
 gi|124293217|gb|ABN02486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10229]
 gi|126225275|gb|ABN88815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106a]
 gi|126242350|gb|ABO05443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10247]
 gi|147747419|gb|EDK54495.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei FMH]
 gi|147752405|gb|EDK59471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei JHU]
 gi|148026479|gb|EDK84564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei 2002721280]
 gi|160696015|gb|EDP85985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 10399]
 gi|169651341|gb|EDS84034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei S13]
 gi|217392911|gb|EEC32933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 576]
 gi|238524328|gb|EEP87761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei GB8 horse 4]
 gi|242139646|gb|EES26048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106b]
 gi|243062887|gb|EES45073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei PRL-20]
          Length = 657

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|332143484|ref|YP_004429222.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693237|sp|B4RS92|MNMG_ALTMD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|327553506|gb|AEB00225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 633

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/619 (46%), Positives = 392/619 (63%), Gaps = 9/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++GA+T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   AFDVIVVGGGHAGTEAALAAARMGANTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V
Sbjct: 66  LGGAMALAIDKGGIQFRTLNSSKGPAVRATRAQADRTLYKNAIRDIVENQENLTLFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +V Q     +  +VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 DDLIVENDRVCGVVTQMGLKFKAKSVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIALAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   RLKTGTPARLD +++ +   + Q  D     FSFM D+  +  QI C IT
Sbjct: 186 RLRALPFRVDRLKTGTPARLDARSLDFSVMQPQPGDSPTPVFSFMGDRAMHPTQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLN+ 
Sbjct: 246 HTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKTSHQIFVEPEGLNSI 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   +R+I G E  +I+RPGYAIEYD+ +P++L  TLETK I GL
Sbjct: 306 EVYPNGISTSLPFDVQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLETKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGLVAG N+A +  + D     R  +Y+GV+IDDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLVAGANAALQVQQKDPFILRRDQAYMGVLIDDLATMGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R  ++   ++        L+   +
Sbjct: 426 YRMFTSRAEYRLLLREDNADSRLTAMGREIGLVDDARWAKYNDKMEAVETELQRLRGQWI 485

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQ 537
              + ++  ++        +  +  E +  P+ +   L    S+ P       +  E+++
Sbjct: 486 HPDHAATPQLNTMLKNPVSREHSLEELIRRPEMTYSQLMKIESVGPGID--DPIAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQM E  + +  E  L+P D D+S +  LSNE+  KL+  +P  + +AS+
Sbjct: 544 IQIKYAGYIARQMDEIAKTQRHENTLLPIDMDFSKISGLSNEVVAKLTEARPETIGKASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+Y+KK+
Sbjct: 604 ISGITPAAISLLLVYLKKH 622


>gi|294341939|emb|CAZ90368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Thiomonas sp.
           3As]
          Length = 644

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/629 (47%), Positives = 394/629 (62%), Gaps = 13/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DV+VIGGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   RNFDVVVIGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR+LY+ A++  +  Q NL + Q  
Sbjct: 65  ALGGAMAEATDEAGIQFRILNASKGPAVRATRAQADRQLYKRAIRGRLEDQPNLWLFQQA 124

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 E       ++++V Q     R  TVVLT GTFL G IHIG  +  AGR GD PS
Sbjct: 125 ADDLLVESTGQAERVTAVVTQTGIRFRTRTVVLTAGTFLDGKIHIGLDQYAAGRAGDPPS 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQ 237
             L           GRLKTGTPAR+DG+TI + K  +Q  D   +P FSF+     +  Q
Sbjct: 185 LRLSARLKALALPQGRLKTGTPARIDGRTIDFSKLIEQPGDLNPMPVFSFLGSADQHPAQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEP
Sbjct: 245 VACWITHTTEQTHDIIRAGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKSSHQIFLEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL T+  YPNGIST+LP ++Q   + +IPGLE  +++RPGYAIEYDY NP  L  +LET
Sbjct: 305 EGLQTNEFYPNGISTSLPFDVQIAMVHSIPGLENAHLLRPGYAIEYDYFNPMALKTSLET 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    D  C  R  +Y+GV++DDL +
Sbjct: 365 KSIDGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGRDPWCPRRDQAYLGVLVDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           
Sbjct: 425 KGVSEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGVVNDARWDAFCRKRDAIEREIQR 484

Query: 478 LKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARKFSSLV 532
           L++  +T ++L    + ++  K   +     + L  P+     L  F     A +F    
Sbjct: 485 LRTTWVTPQSLPPEQAEALLGKSIEREYNLADLLRRPELRYDTLAAFPHPAFAPEFPLGE 544

Query: 533 IERLQIE--SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ER Q+E    YA Y  RQ  E +    +E   +P D DY  +  LS E+++KL+  +P 
Sbjct: 545 TEREQVEIHLKYAGYIERQQDEVERAAQQESLRLPADLDYREVSGLSIEVQQKLNQARPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            L  AS++ GMTPAA++LLLI+++K  +K
Sbjct: 605 TLGLASRLSGMTPAAVSLLLIHLRKGVLK 633


>gi|134281604|ref|ZP_01768312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 305]
 gi|167904864|ref|ZP_02492069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei NCTC 13177]
 gi|167913142|ref|ZP_02500233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 112]
 gi|134247271|gb|EBA47357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 305]
          Length = 657

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|254509071|ref|ZP_05121174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 16]
 gi|219548004|gb|EED25026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 16]
          Length = 631

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/627 (45%), Positives = 393/627 (62%), Gaps = 13/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + + +NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENADNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E +    +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDTAVGVVTQMGLKFRAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGQRTQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNESTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDARWARFNEKIDNMEKERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +  K+        +  + +S +  G+       ++Y   +  + F+   + ++ +  
Sbjct: 482 ETWMNPKSEGIDALNAILKSPMSREASGEDLLRRPEMTYSQLTALDRFAPALEDQQAA-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYEGYIQRQQDEIEKSLRHENTKLPVDMDYSKVSGLSNEVVAKLTEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  AS+I G+TPAA+++LL+++KK  +
Sbjct: 598 IGIASRISGITPAAISILLVHLKKQGI 624


>gi|126440375|ref|YP_001060975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 668]
 gi|167826386|ref|ZP_02457857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 9]
 gi|167847905|ref|ZP_02473413.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei B7210]
 gi|226193173|ref|ZP_03788783.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pakistan 9]
 gi|254298691|ref|ZP_04966142.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           406e]
 gi|166222918|sp|A3NF54|MNMG_BURP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126219868|gb|ABN83374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 668]
 gi|157808631|gb|EDO85801.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           406e]
 gi|225934773|gb|EEH30750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pakistan 9]
          Length = 657

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPVDEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|315128180|ref|YP_004070183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas sp. SM9913]
 gi|315016693|gb|ADT70031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas sp. SM9913]
          Length = 629

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/621 (46%), Positives = 400/621 (64%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQNTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E N ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENNRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENFKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ + K ++Q  D     FSFM  +  + +QI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSKMQEQPGDAPTPVFSFMGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSITGFENAHICRPGYAIEYDFFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A +    +     R ++Y+GV+IDDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLIAGMNAALQVQGKESWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEVIAKEKQRIK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
              +   +     ++   +    R A   E L  P+    +L +I     +F++   +E+
Sbjct: 482 DTWIHKDHAVVDQVNELLKTPLVREASLEELLRRPEVRYNDLMAIEGLGSEFTNKAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEETILPKEFDYKTVSGLSNEVVAKLIDARPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA++LLL+Y+KK 
Sbjct: 602 SRISGITPAAISLLLVYLKKQ 622


>gi|323492998|ref|ZP_08098134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio brasiliensis LMG 20546]
 gi|323312734|gb|EGA65862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio brasiliensis LMG 20546]
          Length = 631

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/623 (46%), Positives = 390/623 (62%), Gaps = 9/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQAVGVVTQMGLRFYAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM ++  + RQI 
Sbjct: 182 ALADRLREMPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPAPVFSFMGNRSQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAQARELGLIDDARWARFNQKIDNMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKF-SSLVI 533
            + +  K  S    +  Q  KT  A E      L  P+ S   L  +   A         
Sbjct: 482 EIWMNPK--SDGVEALNQLLKTPMAREASGEDLLRRPEISYSQLTELEAFAPALEDQQAA 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E ++    E   +P + DYS++  LSNE+  KLS  KP  L 
Sbjct: 540 EQVEIQVKYEGYIKRQQEEIEKSLRHEHTKLPAELDYSAVKGLSNEVVAKLSEAKPETLG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
            AS+I G+TPAA+++LL+++KK+
Sbjct: 600 IASRISGITPAAISILLVHLKKH 622


>gi|312794883|ref|YP_004027805.1| glucose inhibited division protein A [Burkholderia rhizoxinica HKI
           454]
 gi|312166658|emb|CBW73661.1| Glucose inhibited division protein A [Burkholderia rhizoxinica HKI
           454]
          Length = 669

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/625 (47%), Positives = 394/625 (63%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAVATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQSNLWLFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++  V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLIIEGDRVAGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K E+Q  D   IP FSF+     + RQ+ C IT
Sbjct: 187 LRELKLPQGRLKTGTPPRIDGRSIDFLKLEEQPGDLDPIPVFSFLGCADQHPRQVSCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNARTHEIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   IR++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGVSTSLPFDVQLNLIRSMKGLEHAHILRPGYAIEYDYFDPRALKASLETKAIAGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R   + D     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRFVQQRDAWVPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R + F++  +  +   + LKS+ +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWEAFSRKREAVSRETARLKSIWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVIE 534
             K L    + ++  K      +  + L  P  S + L ++       PD       + E
Sbjct: 487 NPKTLPAEDAVALLGKPIDHEYSLADLLRRPGVSYEGLMALQASRYAPPDVLVDDPGLFE 546

Query: 535 ----RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
               +++I   Y  Y  RQ  E +  +  E   +P D DY  +  LS E+ +KL+  +P 
Sbjct: 547 QVKYQIEIGIKYQGYIERQAGEIERNEAHENTRLPADLDYVQVRGLSFEVCQKLNHHRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++KK
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKK 631


>gi|194367607|ref|YP_002030217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas maltophilia R551-3]
 gi|194350411|gb|ACF53534.1| glucose inhibited division protein A [Stenotrophomonas maltophilia
           R551-3]
          Length = 629

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/615 (46%), Positives = 385/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI IGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIAIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  + NL V Q  V 
Sbjct: 68  GGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGEANLTVFQAAVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L   
Sbjct: 128 DLVIEGDAVRGVITQTGLRFDAEAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + +Q+ C IT 
Sbjct: 188 LRERPFQVDRLKTGTPPRIDGRSLDYSVMDEQPGDSPRPVMSFLGSVDEHPQQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL    
Sbjct: 248 TTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGIVE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++GLF
Sbjct: 308 IYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP+G  +G + +RR   F       +  R+ L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADQRLTPVGRGMGLVDDRRWSAFETKQAAVDAERARLGALWAT 487

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIES 540
             N     ++        +     + +  P+     L  +       +   V E+++I  
Sbjct: 488 PANALGREVNETLGVAVSRETNVLDLIKRPELDYAALMQVPSLGPAVADGKVAEQVEIGV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  + QA +I G
Sbjct: 548 KYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTIGQAQRIPG 607

Query: 601 MTPAALNLLLIYIKK 615
           MTPAA++LLL+++++
Sbjct: 608 MTPAAISLLLVHLER 622


>gi|85060383|ref|YP_456085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sodalis glossinidius str. 'morsitans']
 gi|123518619|sp|Q2NQ95|MNMG_SODGM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|84780903|dbj|BAE75680.1| glucose inhibited division protein A [Sodalis glossinidius str.
           'morsitans']
          Length = 629

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/628 (45%), Positives = 395/628 (62%), Gaps = 23/628 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGCQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNASKGPAVRATRAQADRVLYRQAVRGALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL   
Sbjct: 127 DLIMEGDRVVGAVTQIGLKFRARAVVLTVGTFLDGKIHIGMDHYSGGRAGDPPSVSLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP R+D  +I + +   Q  D+ L  FSF+     + RQI C IT 
Sbjct: 187 LRELPFRVNRLKTGTPPRIDAHSIDFSRLATQHGDDPLPVFSFLGSADQHPRQIPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++ 
Sbjct: 247 TNDKTHEVIRQNLDRSPMYAGIIEGVGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + + ++ GLE   I+RPGYAIEYD+ +P++L  TLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMKIVHSMQGLENARIVRPGYAIEYDFFDPRDLKLTLESKLIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   D     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAMGKDGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R +RF    ++    R  L+ + + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTETGRQLGMVDDVRWERFCAKQEQIERERQRLRDIWVH 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI--- 533
             +        L   S++ + +G+     E L  P+     L  +     +F   ++   
Sbjct: 487 PGSDGVEQLNPLLKASLTREANGE-----ELLRRPEMDYARLTHL----ERFGPALVDSQ 537

Query: 534 --ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E       E  L+P   D+S++  LSNE+  KL+  KP +
Sbjct: 538 AAEQVEIQIKYQGYIARQQEEIARQMRNEHTLLPAAMDFSTVSGLSNEVIAKLNDHKPNS 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVK 619
           + QAS+I G+TPAA+++LL+++KK  ++
Sbjct: 598 IGQASRISGVTPAAISILLVWLKKQGLR 625


>gi|289209757|ref|YP_003461823.1| glucose inhibited division protein A [Thioalkalivibrio sp. K90mix]
 gi|288945388|gb|ADC73087.1| glucose inhibited division protein A [Thioalkalivibrio sp. K90mix]
          Length = 624

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 390/618 (63%), Gaps = 11/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 5   FDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R ADAAGI FR+LN +KGPAVR  R Q+DR+LYR A+++ + ++ NL + Q  VA
Sbjct: 65  GGVMARAADAAGIHFRILNRRKGPAVRATRAQSDRQLYRQAIRQFVEAEPNLQIFQQPVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ +V +         VVLT GTFL G +H G  + P GR GD PS  L   
Sbjct: 125 DITMEGDRVTGVVTEAGLAFTARAVVLTVGTFLNGQMHTGLTQQPGGRAGDPPSVRLAAR 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F  GRLKTGTP R+DG+++ + + E Q  D+    FSF      +  Q  C I R
Sbjct: 185 LRDMAFAVGRLKTGTPPRIDGRSVDFSRLEVQPGDDPRPVFSFTGSPGDHPEQRPCHIAR 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH +I  N+  + +YSG I S GPRYCPSIEDK+VRF ++  HQ+F+EPEGL T  
Sbjct: 245 TSERTHDLIRANLDQAPMYSGQIDSTGPRYCPSIEDKVVRFADKTSHQVFVEPEGLTTHE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP  IQ   +++I G E   I RPGYAIEYDY +P+ L P+L T++++ LF
Sbjct: 305 LYPNGISTSLPYAIQVPLVQSIEGFEHARITRPGYAIEYDYFDPRGLRPSLATREVANLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGLVAG+N+AR +   +     R+++YIGV+IDDL ++G  EPY
Sbjct: 365 FAGQINGTTGYEEAAAQGLVAGLNAARLTRDAEPWIPQRSEAYIGVLIDDLVTRGTQEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP+G + G + +    R+A++ +    + S +  L  T
Sbjct: 425 RMFTSRAEYRLLLREDNADLRLTPVGREHGLVDD---ARWARFERRAAAIESEMSRLAQT 481

Query: 485 SKNLSSTS------ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
             +    S      +  K      T  + L  P+     L    P+     +  V E+ +
Sbjct: 482 RPDRDQRSRPALVELLGKAPEPDATLLDLLRRPEADYDALMQALPELDAGCTPDVREQAE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E       ++  +P + DY+ +  LSNE+++KL+  +P  L QA +
Sbjct: 542 IQARYAGYIERQQAEVARQAKADQTALPDNLDYARVHGLSNEIRQKLAEFRPHTLGQAQR 601

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAAL+ L +++K+
Sbjct: 602 IPGVTPAALSALAVHLKQ 619


>gi|76809663|ref|YP_331606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710b]
 gi|167818023|ref|ZP_02449703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 91]
 gi|167896462|ref|ZP_02483864.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 7894]
 gi|167921079|ref|ZP_02508170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei BCC215]
 gi|254259137|ref|ZP_04950191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710a]
 gi|123600829|sp|Q3JXU7|MNMG_BURP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76579116|gb|ABA48591.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           1710b]
 gi|254217826|gb|EET07210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710a]
          Length = 657

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT +G +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEVGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|261250648|ref|ZP_05943223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio orientalis CIP 102891]
 gi|260939217|gb|EEX95204.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio orientalis CIP 102891]
          Length = 631

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/625 (45%), Positives = 394/625 (63%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + ++ +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDQVTGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSDLEVQHGDTPAPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   D     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKDGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAQARELGLIDDARWARFNEKIDNMESERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
            + +  K+        L  T ++ +  G+       ++Y   +  + F+   + ++ +  
Sbjct: 482 DIWMNPKSAGVDALNGLLKTPMAREASGEDLLRRPEITYAQLTELDAFAPALEDQQAA-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL   KP +
Sbjct: 540 --EQVEIQVKYEGYIKRQQDEIEKSLRHENTKLPLDLDYSQVKGLSNEVVAKLGEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+++KK+
Sbjct: 598 IGIASRISGITPAAISILLVHLKKH 622


>gi|90581140|ref|ZP_01236939.1| glucose-inhibited division protein A [Vibrio angustum S14]
 gi|90437661|gb|EAS62853.1| glucose-inhibited division protein A [Vibrio angustum S14]
          Length = 629

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/616 (47%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL V Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVRNVLENQENLMVFQQAVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +    +V +         VVLT GTFL G IHIG      GR GD  SN+L + 
Sbjct: 127 DLIVENHRAVGVVTEMGLKFHGKAVVLTVGTFLGGKIHIGMENYSGGRTGDPASNALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +++ +   E+Q  D     FSFM     + RQI C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARSVDFSVLEEQHGDNPTPTFSFMGKSSDHPRQIPCFITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T+ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T E K I GLF
Sbjct: 307 LYPNGISTSLPFDVQMQIVRSMQGFENATIMRPGYAIEYDFFDPRDLKQTFENKYIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A +    +     R  +Y+GV+IDDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLMAGMNAALQVQDKEGWSPRRDQAYMGVLIDDLSTIGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTP+G + G + + R  RF + I+     R  LK + + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTPMGREFGLVDDARWSRFNQKIENMELERQRLKDIWIN 486

Query: 485 SKNLSSTSIS--FKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
            K+     ++   K    +  +  + L  P+ + + L SI   A     +   E+++I+ 
Sbjct: 487 PKSDHVDELNKILKAPIAREASGEDLLRRPEVTYEQLTSIETFAPALDDIEAREQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E   +P D DYS++  LSNE+  KL+  KP ++  AS+I G
Sbjct: 547 KYQGYIDRQRDEVEKSLRHETTKLPFDIDYSNVKGLSNEVVVKLNDAKPESIGMASRISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+Y+KK+
Sbjct: 607 ITPAAISLLLVYLKKH 622


>gi|104784445|ref|YP_610943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas entomophila L48]
 gi|122401169|sp|Q1I2H6|MNMG_PSEE4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|95113432|emb|CAK18160.1| glucose-inhibited division protein A [Pseudomonas entomophila L48]
          Length = 630

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 389/617 (63%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+ A+ REIL +Q NL + Q   
Sbjct: 67  GGAMALATDMSGIQFRVLNNRKGPAVRATRAQADRAIYK-AVVREILENQPNLWIFQQSC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ +  +V Q        +VVLT+GTFL G+IHIG      GR GD P+N+L  
Sbjct: 126 DDLIVEQDQVKGVVTQMGLRFFADSVVLTSGTFLGGLIHIGLQNYSGGRAGDPPANALAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM +   + RQ+ C IT
Sbjct: 186 RMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAAMHPRQVSCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T 
Sbjct: 246 HTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLEIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRESWCPRRDEAYIGVLVDDLITLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F    +        LKS  +
Sbjct: 426 YRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDARWAAFCAKREGIEREEQRLKSTWV 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                   ++  K    T  A+E+     L+ P+     L             V E+++I
Sbjct: 486 RPGTPQGQAVVDKFG--TPLAHEYSLLNLLARPEVDYAGLIE-ATGGEVIDPQVAEQVEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QAS+I
Sbjct: 543 KTKYAGYIDRQQEEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLEQTRPETLGQASRI 602

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA++LLLI++KK
Sbjct: 603 PGVTPAAISLLLIHLKK 619


>gi|291615571|ref|YP_003518313.1| GidA [Pantoea ananatis LMG 20103]
 gi|291150601|gb|ADD75185.1| GidA [Pantoea ananatis LMG 20103]
          Length = 696

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 389/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 74  FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 133

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 134 GGLMAGAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 193

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 194 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 253

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                    RLKTGTP R+D ++I +     Q  D  +  FSFM +   + +Q+ C +T 
Sbjct: 254 LRALPLRVDRLKTGTPPRIDARSIDFSVLAPQHGDNPMPVFSFMGNAGQHPQQVPCWMTY 313

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 314 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSNE 373

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I GLF
Sbjct: 374 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKLTLESKFIDGLF 433

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 434 FAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTLGTKEPY 493

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 494 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRLRDIWVH 553

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            K+    +  +I+     K  +A + L  P+ +   L ++       +     E+++I+ 
Sbjct: 554 PKSEHVEAVNTITSSPLTKEASAEDLLRRPEMTYLKLMALDAFGPALADEQAAEQVEIQV 613

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 614 KYEGYIARQQEEIDRQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 673

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+++LLIY+KK 
Sbjct: 674 VTPAAISILLIYLKKQ 689


>gi|229542321|ref|ZP_04431381.1| glucose inhibited division protein A [Bacillus coagulans 36D1]
 gi|229326741|gb|EEN92416.1| glucose inhibited division protein A [Bacillus coagulans 36D1]
          Length = 629

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/618 (45%), Positives = 396/618 (64%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEA   AA++GA T +IT     I  M CNP+IGG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGCEAGLAAARIGAKTLMITINLDMIAYMPCNPSIGGPAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y+  M++ I +QENL ++QG V 
Sbjct: 69  GGEMGRNIDKTYIQMRMLNTGKGPAVQALRAQADKVEYQREMKKTIENQENLTLLQGMVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V +  +     TVVLTTGTFLRG I IG+LK  +G     PS +L   
Sbjct: 129 ELVLEDGVCKGVVTKTGAKYTAKTVVLTTGTFLRGEIIIGELKYSSGPNNQQPSIALAEK 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R++GKTI + KTE Q  D     FS+ T K+   Q+ C +T T
Sbjct: 189 LEELGFDLVRFKTGTPPRVNGKTIDYSKTEIQPGDLEPRAFSYETTKMITDQLPCWLTYT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEG +T+ V
Sbjct: 249 NERTHAIIDANLGRAPMFSGMIKGTGPRYCPSIEDKVVRFHDKPRHQLFLEPEGRHTEEV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD I P +L+PTLETKK+  L+ 
Sbjct: 309 YVQGLSTSMPEEVQREILASIEGLEHAKMMRPGYAIEYDAITPTQLWPTLETKKVKNLYT 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A+++   + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 369 AGQINGTSGYEEAAGQGIIAGINAAQRAMGKEELVLGRSDAYIGVLIDDLVTKGTREPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RLT IG ++G I E R ++F    Q        LKS++L  
Sbjct: 429 LLTSRAEYRLLLRHDNADLRLTEIGYQIGLISEERYRKFTAKKQAIEAEIKRLKSVILKP 488

Query: 486 KNLSSTSI-----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + T I     S  +DG    A + L  P+   +++ ++ P   + S  V E+++I+ 
Sbjct: 489 DEKTQTLIREAGGSELKDGI--HAADLLKRPEMRYEHIKALVPPEMELSPEVEEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + + +K  E + IP D DY ++  L+ E ++KL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYIAKSLQQVERMKKLEDKKIPSDIDYDAIHGLATEARQKLNKVRPISIAQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+YI++  +
Sbjct: 607 VNPADISILLVYIEQGKI 624


>gi|254797057|ref|YP_003081895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia risticii str. Illinois]
 gi|254590303|gb|ACT69665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia risticii str. Illinois]
          Length = 627

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/610 (47%), Positives = 397/610 (65%), Gaps = 9/610 (1%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EAAA +A+LG  T L+T+    IG MSCNPAIGG+GKG++V+EIDA+ G
Sbjct: 4   VVVIGGGHAGVEAAAASARLGVETLLVTNSVMNIGEMSCNPAIGGIGKGNVVKEIDAMGG 63

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +M    D A I  R+LN  KG AV GPR QADR+LY+ A+   +   E L +++  V   
Sbjct: 64  VMALATDRASIHSRILNRSKGAAVWGPRAQADRKLYKCAVLGLLTKYEKLSILEDHVTDL 123

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E + +  +V +    IRCS  VLTTGTFL GVI  GK ++  GR G+  S  L N+  
Sbjct: 124 VIENDRLMGVVGEKTGTIRCSAAVLTTGTFLNGVIQTGKERVEGGRFGEKASQCLGNTLR 183

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNL 247
           +  F   RL+TGTPARL   +I +    +Q  D   IPFS+M  +IT  Q+ C IT TN 
Sbjct: 184 RH-FKIARLRTGTPARLYKDSINYSALVEQPGDSPPIPFSYMNTEITVPQVSCYITHTNG 242

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  ++K SAI +G I + GPRYCPSIEDK+VRF E++ HQIFLEPEGL+++++YP
Sbjct: 243 KTHEIIRNSLKFSAIRNG-ISARGPRYCPSIEDKVVRFAEKDSHQIFLEPEGLDSELIYP 301

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIS +LP+EIQ +FIR+I GLEK  + R  Y IEYDYI+P+EL  TLE+K++  L+ AG
Sbjct: 302 NGISNSLPKEIQEEFIRSIAGLEKARVARYAYTIEYDYIDPRELRSTLESKRVKNLYFAG 361

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL-EPYRM 426
           QINGTTGYEEAA QG+VAG N+A        +  SR++ YIGVMIDDL + G   EPYR+
Sbjct: 362 QINGTTGYEEAAGQGIVAGSNAAGAG-----LIISRSEGYIGVMIDDLITLGTNGEPYRL 416

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR++LRPDNAD RLT    ++G + E R   + K  + ++  +S L  L  T  
Sbjct: 417 FTSRAEYRLNLRPDNADFRLTEKAYRVGLVDEERYAAYRKKYETFHKYKSKLNELSTTPY 476

Query: 487 NLSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
            L+    IS  QDG  ++A+  ++ P F  ++L  I  +  +      E L I + Y  Y
Sbjct: 477 ELAKIEGISVAQDGVRKSAWNLITQPLFGFEDLLRIWSELSEVPEEYREMLTINARYEPY 536

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + K ++  EK +IP +FD+ ++  LS+E+ EKL  ++P  L QA +I G+TPAA
Sbjct: 537 LLRQEQDIKLLRNNEKVVIPSNFDFGAIKTLSSEIIEKLQAVRPETLAQAKRISGVTPAA 596

Query: 606 LNLLLIYIKK 615
           +  +LI++++
Sbjct: 597 IVSILIHLRR 606


>gi|54310653|ref|YP_131673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium profundum SS9]
 gi|81170567|sp|Q6LLF7|MNMG_PHOPR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46915096|emb|CAG21871.1| Putative glucose inhibited division protein A [Photobacterium
           profundum SS9]
          Length = 629

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/626 (46%), Positives = 397/626 (63%), Gaps = 23/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREVLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +V +     R ++VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 DDLIVENDRVIGVVTEMGLKFRATSVVLTVGTFLGGKIHIGLENYSGGRAGDPPSIALAS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D +T+ + + + Q  D  +  FSFM     + RQI C IT
Sbjct: 186 RLRELPFRVDRLKTGTPPRIDARTVDFSRLQAQHGDNPIPTFSFMGKTSDHPRQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T 
Sbjct: 246 YTNEKTHDVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQIQIVRSMDGFENAAIMRPGYAIEYDFFDPRDLKQTFETKFIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A +S   +  C  R  +Y+GV+IDDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGMNAALQSQGKEGWCPRRDQAYMGVLIDDLSTMGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG + G + + R  RF + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEIGREFGLVDDDRWARFNQKVENIEQERQRLKDIWI 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-- 533
              +        +  T I+ + +G+     + L  P+ +    + +      FS   I  
Sbjct: 486 NPNSDHVDEINKILKTPIAREANGE-----DLLRRPEIT----YKLLTQLEDFSPAHIDT 536

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D +YS +  LSNE+  KL+  KP 
Sbjct: 537 QASEQVEIQVKYQGYIDRQKDEVEKSLRHETTKLPFDLEYSIVKGLSNEVIAKLTDAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA++LLL+Y+KK+
Sbjct: 597 TIGMASRISGITPAAISLLLVYLKKH 622


>gi|319760786|ref|YP_004124723.1| glucose inhibited division protein a [Alicycliphilus denitrificans
           BC]
 gi|317115347|gb|ADU97835.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           BC]
          Length = 659

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/641 (46%), Positives = 396/641 (61%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V Q     R   VVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVAGAVTQIGLRFRARAVVLTAGTFLDGRIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E ++P FSFM   + +
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFMGSTVMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 245 PRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDIQYALVRSMRGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV++DD
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEAPWLPRRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   FA      +  
Sbjct: 425 LVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFAAKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS- 530
              LKS  +  + L++     +  K        ++ L  PD     L S+  D  K++S 
Sbjct: 485 TERLKSTWVNPRILAAAEAERVLGKAIDHEYNLFDLLRRPDVDYARLMSL--DGGKYASG 542

Query: 531 ------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                        VIE+++I + YA Y  RQ  E +     E+  +P + DY  + ALS 
Sbjct: 543 DVSRETLGALSEPVIEQVEIAAKYAGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALSI 602

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 603 EVRQKLQKHRPETLGQASRISGVTPAAISLLLVHLKKGGFK 643


>gi|212712654|ref|ZP_03320782.1| hypothetical protein PROVALCAL_03749 [Providencia alcalifaciens DSM
           30120]
 gi|212684870|gb|EEB44398.1| hypothetical protein PROVALCAL_03749 [Providencia alcalifaciens DSM
           30120]
          Length = 629

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/619 (46%), Positives = 392/619 (63%), Gaps = 9/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   QFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++  V +     +   VVLT GTFL G IHIG      GR GD P+ +L  
Sbjct: 126 EDLIVENNRVTGAVTRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAITLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + +Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQEQHPQQVPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIFLEPEGL ++
Sbjct: 246 YTNEQTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A+ +  LD     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAAQHAFGLDGWFPRRDQAYVGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWEHFNRKVELIEKERQRLKDIWV 485

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQ 537
             K+ +   I         K     + L  P+ + Q L S+    P      +   ++++
Sbjct: 486 HPKSDNHEEIDQILTVPLSKEANGEDLLRRPEMTYQMLTSLNLFAPGVEDPQA--ADQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+
Sbjct: 544 IQVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK 
Sbjct: 604 ISGITPAAISILLVWLKKQ 622


>gi|261346698|ref|ZP_05974342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rustigianii DSM 4541]
 gi|282565098|gb|EFB70633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rustigianii DSM 4541]
          Length = 629

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 398/621 (64%), Gaps = 13/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   QFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++  V +     +  +VVLT GTFL G IHIG      GR GD P+ SL  
Sbjct: 126 EDLIVENNRVTGAVTRMGLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + +Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQEQHPQQVPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIFLEPEGL ++
Sbjct: 246 YTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMKIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A+ +  L+     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAAQHAFDLEGWFPRRDQAYVGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWEHFNRKVEMIEKERQRLKDIWV 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             K+        + S  +S + +G+       ++Y   +  NLF+   +  + +    ++
Sbjct: 486 HPKSDNHEEIDQILSVPLSKEANGEDLLRRPEMTYQMLTSLNLFAPGVEDPQAA----DQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGITPAAISILLVWLKKQ 622


>gi|182416733|ref|ZP_02948132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237669669|ref|ZP_04529647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379390|gb|EDT76885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237654903|gb|EEP52465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 628

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/612 (45%), Positives = 394/612 (64%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL
Sbjct: 10  FDVIVVGAGHAGCEAALASARMGLNTLVCTINLDSIALMPCNPNIGGTAKGHLVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M++ +  Q+NL + Q EV 
Sbjct: 70  GGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKKVLEEQDNLKIRQIEVT 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +S +V ++ ++ +C  VVL TGT+L+G I IG++    G  G  P+N L  S
Sbjct: 130 ELIVEDGKVSGVVTKNGAVFKCKAVVLATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ K++ + K  +Q  D++++PFSFM+ K+   Q+ C +T T
Sbjct: 190 LLDLGISLRRFKTGTPARINSKSVDFSKMIEQNGDDKIVPFSFMSGKLQKEQVACYLTYT 249

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH II ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEG++T  +
Sbjct: 250 NEETHNIIRENINRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKTQHQIFVEPEGMDTLEM 309

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S++LPEE+Q + +RT+PGLE V ++R  YAIEYD I+P +L PTLE K I GL+ 
Sbjct: 310 YVGGFSSSLPEEVQIKMLRTLPGLENVEMMRTAYAIEYDSIDPTQLKPTLEFKNIDGLYG 369

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA AQGLVAG+N+A K    + +  +R+D+YIGV+IDDL +KG  EPYR
Sbjct: 370 AGQLNGSSGYEEAGAQGLVAGVNAALKIKNQEPLILTRSDAYIGVLIDDLVTKGTNEPYR 429

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G ++G + E R   F    +        LK+L +T+
Sbjct: 430 MMTSRAEYRLLLRQDNADLRLTEMGHRVGLVTEERYNTFLTRKKNIEDELERLKTLKVTN 489

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           K   N    SI+     K  + YE +  P+     L  + P+    S  + E++ + + Y
Sbjct: 490 KKEVNEFLVSINSTPLRKAISFYELMQRPELEYFQLAQLDPERPDLSDDIGEQINVLTKY 549

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   QM +  + K  EK+L+PKD DY+ +  L  E  +KLS +KP ++ QAS+I G++
Sbjct: 550 EGYIQSQMEQVSQFKKFEKKLLPKDIDYNDVSGLRTEAVQKLSNIKPISIGQASRISGVS 609

Query: 603 PAALNLLLIYIK 614
           PA +++LLIY++
Sbjct: 610 PADISVLLIYLE 621


>gi|53721015|ref|YP_110001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei K96243]
 gi|81170533|sp|Q63PG8|MNMG_BURPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52211429|emb|CAH37420.1| glucose inhibited division protein A [Burkholderia pseudomallei
           K96243]
          Length = 657

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++G+ EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGISEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|116326853|ref|YP_796573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116329800|ref|YP_799518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282424|sp|Q04WG0|MNMG_LEPBJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122285296|sp|Q056V5|MNMG_LEPBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116119597|gb|ABJ77640.1| Glucose-inhibited division protein A [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123489|gb|ABJ74760.1| Glucose inhibited division protein A [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 635

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 389/622 (62%), Gaps = 23/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +V+G GHAG EAA +A+K GA T LIT    TIG MSCNPAIGG+ KGH+VRE+DAL
Sbjct: 14  FDCVVVGAGHAGSEAAYIASKGGAKTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDAL 73

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG+V D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q  V 
Sbjct: 74  GGIMGKVIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSMRQDTVE 133

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     L  S
Sbjct: 134 ELLIENDQVIGVKTGRGFEIYTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKS 193

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K++   GRLKTGTP R+   ++       Q  D    PFSF T+KIT RQI C IT T
Sbjct: 194 LAKYNLKLGRLKTGTPPRIHKNSVDLSVLAIQDGDANPSPFSFSTEKITRRQIPCYITYT 253

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N+ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  T  +
Sbjct: 254 NVETHKLIHENLSLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETTEI 313

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI GL+ 
Sbjct: 314 YLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYH 373

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVA  +       LD + F R++SYIGV+IDDL  KGV +PYR
Sbjct: 374 AGQINGTTGYEEAAAQGLVAAYSVLHSLKNLDPLLFKRSESYIGVLIDDLVYKGVEDPYR 433

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL---- 481
           MFTSRAE+R+ LR DNAD RL   G +LG + +    R     +  N +R  +  +    
Sbjct: 434 MFTSRAEHRLLLRQDNADQRLMKYGYELGLVDQESYDRMKDKYERVNSVREKIYQIPLKP 493

Query: 482 ------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                 +L  K +++     K D        FL  P+  I+++  + P+   +S      
Sbjct: 494 SDEFQNLLDQKGITNYKFGMKLDS-------FLKRPEIKIEDVEFMLPEVSSWSESEKNI 546

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNL 592
           L++E  Y  Y  R++   + I+++ K L   IP+D +Y S+  L  E  +KL   KP  L
Sbjct: 547 LEMEIKYEGYIKREL---ETIQWKNKYLDLAIPEDINYESIAGLKKEAIQKLKTHKPMTL 603

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            +A +I G+ P+ ++LLL +IK
Sbjct: 604 EKAGQISGVDPSDVDLLLYHIK 625


>gi|253997705|ref|YP_003049769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylotenera mobilis JLW8]
 gi|253984384|gb|ACT49242.1| glucose inhibited division protein A [Methylotenera mobilis JLW8]
          Length = 639

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/619 (47%), Positives = 395/619 (63%), Gaps = 9/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQENLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  + +V Q         VVLT GTFL G++H+G     AGR GD PS SL   
Sbjct: 127 DIILEGDRAAGVVTQIGLRFAAKAVVLTAGTFLGGLVHVGLQNYQAGRAGDPPSVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMTIQPGDNPVPVFSFLGNAAQHPAQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGLATNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 IYPNGISTSLPFDIQLALVRSVRGLENAHILRPGYAIEYDYYDPRGLKSSLETKAVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  +   +  C +R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYAQGKEAWCPARDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F++  +     +  LK   + 
Sbjct: 427 RMFTSRAEYRLQLREDNADMRLTEIGRKLGLVDDARWEAFSRKKEAIEREQERLKKTFVQ 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQI 538
             NLS+  +     K      + +E L  P  S + + S+  DA     L   V E+++I
Sbjct: 487 PANLSAEQMQAVFGKPLEHEYSLFELLRRPAVSYEAVLSL--DASGLGELEPAVREQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  RQ+ E    + +E  ++PKD DY  +  L  E ++KL+  KP  + QAS+I
Sbjct: 545 SAKYQGYIDRQVEEVARSRGQENTILPKDLDYREIHGLPIEAQQKLNAHKPETIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G+TPAA++LLL+Y+K+ +
Sbjct: 605 SGITPAAISLLLVYLKRKS 623


>gi|167740808|ref|ZP_02413582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 14]
          Length = 657

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 392/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LE+K I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLESKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|330822706|ref|YP_004386009.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           K601]
 gi|329308078|gb|AEB82493.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           K601]
          Length = 677

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/641 (46%), Positives = 396/641 (61%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 23  QEFDVIVVGGGHAGTEAALAAARMGCRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 82

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 83  ALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 142

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V Q     R   VVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 143 VDDLMVEGDRVAGAVTQIGLRFRARAVVLTAGTFLDGRIHVGLNNYAAGRAGDPPAVSLS 202

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E ++P FSFM   + +
Sbjct: 203 ARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFMGSTVMH 262

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 263 PRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 322

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 323 LEPEGLTTHEFYPNGISTSLPFDIQYALVRSMRGLENAHILRPGYAIEYDYFDPRSLKSS 382

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV++DD
Sbjct: 383 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEAPWLPRRDEAYLGVLVDD 442

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   FA      +  
Sbjct: 443 LVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFAAKRDAVSRE 502

Query: 475 RSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS- 530
              LKS  +  + L++     +  K        ++ L  PD     L S+  D  K++S 
Sbjct: 503 TERLKSTWVNPRILAAAEAERVLGKAIDHEYNLFDLLRRPDVDYARLMSL--DGGKYASG 560

Query: 531 ------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                        VIE+++I + YA Y  RQ  E +     E+  +P + DY  + ALS 
Sbjct: 561 DVSRETLGALSEPVIEQVEIAAKYAGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALSI 620

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 621 EVRQKLQKHRPETLGQASRISGVTPAAISLLLVHLKKGGFK 661


>gi|254447507|ref|ZP_05060973.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium HTCC5015]
 gi|198262850|gb|EDY87129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium HTCC5015]
          Length = 628

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/618 (46%), Positives = 395/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARSGARTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD  GIQFR LN +KGPAVR  R QADR LY+ A+++ + +QENL + Q    
Sbjct: 67  GGAMGKAADLGGIQFRTLNSRKGPAVRATRAQADRVLYKAAIRQILENQENLSIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ +V Q   +    TVVLT GTFL G IHIG  +   GR GD PSN+L   
Sbjct: 127 DLCVEGDRVTGVVTQSGIVFSAKTVVLTVGTFLGGQIHIGLKQSAGGRAGDPPSNALAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F  GRLKTGTP R+D +++ + + E Q  D+ +  FSFM     +  Q+ C IT 
Sbjct: 187 LRALPFRVGRLKTGTPPRIDARSVDFSQLETQPGDDPVPVFSFMGSAQDHPEQVPCHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II + +  S +YSG I+  GPRYCPSIEDKI+RF +++ HQIF+EPEGLNT  
Sbjct: 247 TNETTHDIIRQGLDESPMYSGVIEGVGPRYCPSIEDKIMRFADKDRHQIFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+L  E Q   +R+I G E  +I RPGYAIEYDY +P++L  TLET+ +  L+
Sbjct: 307 LYPNGISTSLSFETQMALVRSIKGFENAHITRPGYAIEYDYFDPRDLRNTLETQFVDNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++ ++  +   R  +YIGV++DDL ++G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASMRAREVGELTLGRDQAYIGVLVDDLITRGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT +G  +G + + R   F    +     +  L+SL + 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTELGRDVGLVDDARWTAFNDKREAVACEKQRLQSLWVQ 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
             + +  S   ++ K   K  TA + L  P+ +   L S+    +   +  V ++++ + 
Sbjct: 487 PHSPAGKSFAKVTGKALSKEATAADLLKRPEMNYSQLMSLDGIGSGTETPSVADQVETQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  R   + +  + +E   +P D DY S+  LS E+  KL+  +P  L QA +I G
Sbjct: 547 KYAGYLARAEADIERNRAQENTALPDDIDYPSIRGLSKEVAHKLAEHRPNTLGQAGRIPG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LL +++K+ ++
Sbjct: 607 VTPAAISLLRVHLKRRSL 624


>gi|264676173|ref|YP_003276079.1| glucose inhibited division protein A [Comamonas testosteroni CNB-2]
 gi|262206685|gb|ACY30783.1| glucose inhibited division protein A [Comamonas testosteroni CNB-2]
          Length = 653

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/642 (45%), Positives = 400/642 (62%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 1   MYPQEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 61  EVDALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 121 QQAVDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM ++
Sbjct: 181 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNR 240

Query: 233 ITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
             + RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 241 AMHPRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKENH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 301 QIFLEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 361 KSSFETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEGPWMPRRDEAYLGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 421 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDARWDSFSRKRDAV 480

Query: 472 NFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS-------- 520
           +     LKS  +  + ++   S  +  K   +    ++ L  P      L          
Sbjct: 481 SRETERLKSTWVNPRVVAAEESERVLGKAMEREYNLFDLLRRPGVDYDKLMGMNQGKYAS 540

Query: 521 --ICPDA-RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
             + P+A  + S+ VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS
Sbjct: 541 ADVQPEALGELSAPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALS 600

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 601 FEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 642


>gi|319428565|gb|ADV56639.1| glucose inhibited division protein A [Shewanella putrefaciens 200]
          Length = 629

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 384/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENDRVVGVVTQMGLAFESPAIVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT  
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGLNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +    D  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGMNASLQVQGKDAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDTRWAAFSEKLESIELELQRLRAQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I          L  E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPLAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLHLDYKEVPGLSNEVIAKLNSHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 VTPAAISILLVHLKK 621


>gi|28899854|ref|NP_799459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361980|ref|ZP_05774985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus K5030]
 gi|260876533|ref|ZP_05888888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AN-5034]
 gi|260897410|ref|ZP_05905906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus Peru-466]
 gi|260902395|ref|ZP_05910790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ4037]
 gi|31076670|sp|Q87K98|MNMG_VIBPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28808106|dbj|BAC61343.1| glucose inhibited division protein A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087884|gb|EFO37579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus Peru-466]
 gi|308090424|gb|EFO40119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AN-5034]
 gi|308107142|gb|EFO44682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ4037]
 gi|308114121|gb|EFO51661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus K5030]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/624 (47%), Positives = 389/624 (62%), Gaps = 11/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKF-SSLV 532
           S   T  N +S  I    +  KT  A E      L  P+ S   L  +   A        
Sbjct: 482 S---TWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++
Sbjct: 539 AEQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLSEAKPESI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
             AS+I G+TPAA+++LL+++KK+
Sbjct: 599 GIASRISGITPAAISILLVHLKKH 622


>gi|296137580|ref|YP_003644822.1| glucose inhibited division protein A [Thiomonas intermedia K12]
 gi|295797702|gb|ADG32492.1| glucose inhibited division protein A [Thiomonas intermedia K12]
          Length = 676

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/629 (47%), Positives = 393/629 (62%), Gaps = 13/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DV+VIGGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 37  RNFDVVVIGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 96

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR+LY+ A++  +  Q NL + Q  
Sbjct: 97  ALGGAMAEATDEAGIQFRILNASKGPAVRATRAQADRQLYKRAIRGRLEDQPNLWLFQQA 156

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 E       ++++V Q     R  TVVLT GTFL G IHIG  +  AGR GD PS
Sbjct: 157 ADDLLVESTGQGERVTAVVTQTGIRFRTRTVVLTAGTFLDGKIHIGLDQYAAGRAGDPPS 216

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQ 237
             L           GRLKTGTPAR+DG+TI + K  +Q  D   +P FSF+     +  Q
Sbjct: 217 LRLSARLKALALPQGRLKTGTPARIDGRTIDFSKLIEQPGDLNPMPVFSFLGSADQHPAQ 276

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEP
Sbjct: 277 VACWITHTTEQTHDIIRAGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKSSHQIFLEP 336

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL T+  YPNGIST+LP ++Q   + +IPGLE  +++RPGYAIEYDY NP  L  +LET
Sbjct: 337 EGLQTNEFYPNGISTSLPFDVQIAMVHSIPGLENAHLLRPGYAIEYDYFNPMALKTSLET 396

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    D  C  R  +Y+GV++DDL +
Sbjct: 397 KAIDGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGRDPWCPRRDQAYLGVLVDDLVT 456

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           
Sbjct: 457 KGVSEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGVVNDARWDAFCRKRDAIEREIQR 516

Query: 478 LKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARKFSSLV 532
           L++  +T ++L    + ++  K   +     + L  P+     L  F     A +F    
Sbjct: 517 LRTTWVTPQSLPPEQAEALLGKSIEREYNLADLLRRPELRYDTLAAFPHPAFAPEFPLGE 576

Query: 533 IERLQIE--SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ER Q+E    YA Y  RQ  E      +E   +P D DY  +  LS E+++KL+  +P 
Sbjct: 577 TEREQVEIHLKYAGYIERQQDEVDRAAQQESLRLPADLDYREVSGLSIEVQQKLNQARPE 636

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            L  AS++ GMTPAA++LLLI+++K  +K
Sbjct: 637 TLGLASRLSGMTPAAVSLLLIHLRKGVLK 665


>gi|206970241|ref|ZP_03231194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH1134]
 gi|206734818|gb|EDZ51987.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH1134]
          Length = 629

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 396/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLSLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGRKIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|314934964|ref|ZP_07842323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus caprae C87]
 gi|313652894|gb|EFS16657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus caprae C87]
          Length = 625

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 397/619 (64%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEENEVKGVRTNIGTEYRSKAVVVTTGTFLRGEIILGNMKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DNLRQLGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKSIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQNEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + + + I  K   + +    A + L  P+ +   +  I  +  +    V E+++I++
Sbjct: 483 KPNDHTQSVIESKGGSRLKDGILAIDLLRRPEMTYDTILEILEEDHQLPDAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|156972768|ref|YP_001443675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio harveyi ATCC BAA-1116]
 gi|166224337|sp|A7N0X6|MNMG_VIBHB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156524362|gb|ABU69448.1| hypothetical protein VIBHAR_00433 [Vibrio harveyi ATCC BAA-1116]
          Length = 631

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/625 (45%), Positives = 393/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +++ +  +V Q     +   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVDQDRVVGVVTQMGLKFQAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDARWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           S  +   +        L  T ++ +  G+       +SY D +  + F+   + ++ S  
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSDLTQLDAFAPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLTEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+++KK+
Sbjct: 598 IGIASRISGITPAAISILLVHLKKH 622


>gi|328471205|gb|EGF42107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 10329]
          Length = 631

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/624 (47%), Positives = 389/624 (62%), Gaps = 11/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPIFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKF-SSLV 532
           S   T  N +S  I    +  KT  A E      L  P+ S   L  +   A        
Sbjct: 482 S---TWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++
Sbjct: 539 AEQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLSEAKPESI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
             AS+I G+TPAA+++LL+++KK+
Sbjct: 599 GIASRISGITPAAISILLVHLKKH 622


>gi|228955733|ref|ZP_04117728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229072948|ref|ZP_04206144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus F65185]
 gi|229082697|ref|ZP_04215144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock4-2]
 gi|229181729|ref|ZP_04309052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 172560W]
 gi|229193734|ref|ZP_04320675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 10876]
 gi|228589759|gb|EEK47637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 10876]
 gi|228601762|gb|EEK59260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 172560W]
 gi|228700609|gb|EEL53148.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock4-2]
 gi|228710194|gb|EEL62172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus F65185]
 gi|228803961|gb|EEM50585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 629

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 396/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGRKIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|297621984|ref|YP_003710121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Waddlia chondrophila WSU 86-1044]
 gi|297377285|gb|ADI39115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Waddlia chondrophila WSU 86-1044]
          Length = 613

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/613 (46%), Positives = 394/613 (64%), Gaps = 17/613 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A++GA T L+T    TIG MSCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVMGGGHAGCEAALASARMGAKTLLLTMNLDTIGKMSCNPAVGGIGKGHMVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D  GIQ+R+LN  KGPAV  PR QAD+  Y+  ++  +  QENL++ QG V 
Sbjct: 68  GGEMGKVIDCTGIQYRMLNATKGPAVWAPRAQADKAAYQFEIKHRLEKQENLEIHQGTVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +  ++       TVV+++GTF+RG++HIG+     GR GD PS  L   
Sbjct: 128 EIFVENDTVQGVATKEGIYFTAPTVVISSGTFMRGLLHIGERNFSGGRAGDQPSVGLSGC 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             K  F   RLKTGTP R++ ++I    TE+Q  +E  I FSF  + K    Q+ C IT 
Sbjct: 188 LKKLGFHLDRLKTGTPPRINKRSINLSLTEEQPGEEG-IRFSFDDEGKRKLPQVSCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET +II++NI  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL T+ 
Sbjct: 247 TTQETKQIILDNIHRSPLYSGKIQGVGPRYCPSIEDKVVRFSDKERHQLFLEPEGLQTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LP ++Q+ FI++IP L    I RP YAIEYDY+   ++ P+LE+KK+ GLF
Sbjct: 307 IYVNGISSSLPLDVQYAFIKSIPALRNAEITRPAYAIEYDYVTSGQIKPSLESKKVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A K    + +   R++SYIGVMIDDL +KG+ EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLLAGINAASKVAGREPLILKRSESYIGVMIDDLITKGLDEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RL   G   G I ++R +               LK+  + 
Sbjct: 427 RMFTSRAEHRLLLRQDNADLRLRKYGYAYGLIDQKRWETLC------------LKAETIE 474

Query: 485 SKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-RLQIESSY 542
            + ++    +FKQ +GK  +  + L  P+ + ++L    P+A       I  ++++   Y
Sbjct: 475 WE-MTRFEKTFKQVNGKGFSLAQLLRRPEMTYESLLETYPEAVVDHGEEINFQIELNLKY 533

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ  E + I   E   +P+ FD++ +  L NE K+KL    P  L QAS+I G++
Sbjct: 534 SGYISRQNTEIERISQVENLRVPEHFDFNQVSGLRNEAKQKLCRHNPLTLGQASRISGVS 593

Query: 603 PAALNLLLIYIKK 615
           PA +++L++ + K
Sbjct: 594 PADISVLIVELTK 606


>gi|161523273|ref|YP_001578285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans ATCC 17616]
 gi|189351954|ref|YP_001947582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans ATCC 17616]
 gi|238687049|sp|A9AJF1|MNMG_BURM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160340702|gb|ABX13788.1| glucose inhibited division protein A [Burkholderia multivorans ATCC
           17616]
 gi|189335976|dbj|BAG45046.1| glucose inhibited division protein A [Burkholderia multivorans ATCC
           17616]
          Length = 656

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDCVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P      +  +    C  A   +      +
Sbjct: 487 TPKTLPPEEATALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGECGPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|160872528|ref|ZP_02062660.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsiella grylli]
 gi|159121327|gb|EDP46665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsiella grylli]
          Length = 621

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 11/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI++GGGHAG EAA  AA++GAST L+TH   T+G +SCNP+IGG+GK HLV+E+DAL
Sbjct: 7   YDVIIVGGGHAGTEAALAAARVGASTLLLTHNIETLGQLSCNPSIGGIGKSHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M + AD AGIQ+R LN  KGPAVR  R Q DR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGIMAQAADLAGIQWRTLNASKGPAVRATRAQMDRNLYKQAIRNALENQANLFIFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I  +V Q        +VVLT GTFL G IHIG  +   GR G+  +N+L   
Sbjct: 127 NIILQSDRIVGVVTQMGLQFYAQSVVLTAGTFLAGKIHIGLQQANGGRAGEPAANTLAEK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +  F   RLKTGTP RLDG+TI +    +Q +D  L  FS + + K    Q  C IT 
Sbjct: 187 LRQLPFRVKRLKTGTPPRLDGRTINYQVLVEQPSDTPLPVFSDLGNVKQHPEQRSCFITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I   GPRYCPSIEDK+VRF +++ HQIFLEPEGL+T  
Sbjct: 247 TNETTHTIIRHGLDRSPLYSGLIAGVGPRYCPSIEDKVVRFADKSAHQIFLEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q+  I +I GLE+ +I RPGYAIEYD+ +P++LFP+LE++ I  LF
Sbjct: 307 IYPNGISTSLPFDVQYDLIHSIEGLEQAHITRPGYAIEYDFFDPRDLFPSLESRLIENLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAAAQGL+AG+N+A K+ +       R+++Y+GV+IDDL ++G LEPY
Sbjct: 367 CAGQVNGTTGYEEAAAQGLIAGLNAALKAQEKSMWYPRRSEAYMGVLIDDLITQGTLEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RL+    KLG I E R K+           +  LK +++ 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLSEAAYKLGLIDESRWKKMDDKRSILEQEQQRLKQILIK 486

Query: 485 SKNLSSTSISFKQDGKTRTAY----EFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQ 537
                ST+I   Q G+T T +    E L+ P+ +  +L +I    P        + +++ 
Sbjct: 487 PHTPLSTAIE-AQLGQTITRHYRLSELLTRPELNYSHLMNIEGLGPGV--MDDAISKQID 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  RQ  E +     E   +P   DY+++  LSNE++EKL   +P  L QAS+
Sbjct: 544 IQAKYQGYIDRQCAEIQRQSRYENITLPLHLDYNAVKGLSNEVREKLIQCRPLTLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LLL++IKK
Sbjct: 604 IPGITPAAISLLLVHIKK 621


>gi|254282249|ref|ZP_04957217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR51-B]
 gi|219678452|gb|EED34801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR51-B]
          Length = 632

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/617 (46%), Positives = 394/617 (63%), Gaps = 5/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A+ GAST L+TH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 5   QQFDVIVIGGGHAGTEAALASARSGASTLLLTHSVDTLGQMSCNPAIGGIGKSHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  DAAGIQFRVLN +KGPAVR  R QADR LYR A++ ++L+Q+NL V Q  
Sbjct: 65  ALGGAMAKATDAAGIQFRVLNARKGPAVRATRAQADRVLYRNAIREQLLNQQNLLVFQDS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   ++  V +         VVLT GTFLRG IH+G      GRMGD  S  L 
Sbjct: 125 VEDVIIEGTRVAGAVTRTGLRFLSRAVVLTAGTFLRGKIHVGLENSEGGRMGDPASVGLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
           +   +    T RLKTGTP R+D +++ +   E Q+ DE     S +  +  +  Q  C I
Sbjct: 185 DRLRELCPRTDRLKTGTPPRIDARSVDFSVMETQWGDEPRPVMSVLGHRDQHPEQRCCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T+TN  TH II   +  S ++SG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T
Sbjct: 245 TKTNERTHDIIRGALDRSPLFSGVIEGTGPRYCPSIEDKIHRFSDKSSHQLFVEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP + Q   +++I G E+ +I RPGYAIEYDY +P++L  +LET+ + G
Sbjct: 305 TELYPNGISTSLPFDTQLALVQSIAGFERAHITRPGYAIEYDYFDPRDLKHSLETRGVQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR++         R ++YIGV++DDL + G LE
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARQTRDQVAWEPRRDEAYIGVLVDDLVTHGTLE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP G  +G + + + + F++  +          +  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLTPAGRSMGLVLDPQWQHFSQKREAIEQETERFNTTF 484

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   + ++ ++  K D      Y   + L  P+    ++ ++  +A     + ++ +  +
Sbjct: 485 IQPNSPAALTLQSKIDKPLSREYSLSDLLRRPELGYGDVAALAGNAVDDEQVALQ-VATQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  E   ++  E   IP+D DY+++  LSNE+K+KL   +P ++ +AS+I 
Sbjct: 544 IKYAGYITRQQEEIDRLQRLESTPIPEDMDYATVSGLSNEIKQKLEAARPTSIARASRIA 603

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAAL+LL I+IKK+
Sbjct: 604 GITPAALSLLAIHIKKH 620


>gi|187918052|ref|YP_001883615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia hermsii DAH]
 gi|119860900|gb|AAX16695.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Borrelia hermsii DAH]
          Length = 626

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/624 (46%), Positives = 406/624 (65%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  +D IVIGGGHAG EA+   A+L   T LIT    TIG +SCNPAIGGL KG++VRE
Sbjct: 5   IDMDFDAIVIGGGHAGIEASLALARLNFKTLLITQNLDTIGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  +GPAV+ PR QAD+ +Y++  +  +  Q+NLD+ Q
Sbjct: 65  IDALGGEMGCLIDFSMIQFRILNKSRGPAVQAPRAQADKLVYQVKAKETLERQDNLDLFQ 124

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+ F  N+ +N I  ++ +  +      VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 125 DTVSDFLLNSMRNKIEGVITERGNKFTSRVVVLTTGTFLRGKIFIGEYRACMGRISEPAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  FD GRLKTGTPAR+  K+I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 185 CGLEKILLELGFDMGRLKTGTPARVHRKSINFAKTEIQFGDSDIIPFSFSNTKIDKAQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II +N+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYITYTNKKTHEIISDNMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y NG+S++LPE+IQ + I +I GLE   I RPGYA+EYDYINP EL+ +LETK+
Sbjct: 305 LSTEEMYLNGLSSSLPEDIQKRLINSIDGLENAVITRPGYAVEYDYINPIELYASLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF+AGQ NG++GYEEAAAQG++AGIN+A +    D +   RT SYIGV+IDDL +KG
Sbjct: 365 IKGLFVAGQTNGSSGYEEAAAQGIMAGINAALRLQGKDPMILPRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIRWGYEVGLVSEEKYSRYFCKEKQVEEIKELLR 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  K  S+  +   +    +  Y  +  P  ++ +L +I P     S +++E+++++
Sbjct: 485 QRRLKEKEASTLQL---KKHINKDFYHIIKDPYVNLSDLLNIDPKLNA-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DF+Y  +  LS E KEK + ++P NL QAS+I 
Sbjct: 541 IKYEGYINRQRDLIRKMNNLELIKLPLDFNY-EIEGLSREAKEKFARIQPANLAQASRIS 599

Query: 600 GMTPAALNLLLIYIK--KNTVKLN 621
           G+    + +LLI+    KN V L+
Sbjct: 600 GVRNTDIQVLLIHFSNPKNKVVLD 623


>gi|323144403|ref|ZP_08079011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Succinatimonas hippei YIT 12066]
 gi|322415856|gb|EFY06582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Succinatimonas hippei YIT 12066]
          Length = 633

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/618 (47%), Positives = 387/618 (62%), Gaps = 5/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R +DVIV+G GHAG EAA  +A++G  T L+TH   TIG MSCNPA GG+GKGHL+REI
Sbjct: 9   QRIFDVIVVGAGHAGIEAAGASARMGCKTLLLTHNIETIGEMSCNPAFGGIGKGHLLREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+  +  D AGIQFR LN  KGPAVR  R Q DR LY+  +++ +    NL + Q 
Sbjct: 69  DAMGGICPKAIDRAGIQFRTLNSSKGPAVRATRAQTDRHLYKEVIRKTLTDYPNLTIFQQ 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  +   +S +        R + VV+ +GTFL G+IHIG      GR GD  S  L
Sbjct: 129 PCTKLIFDGETLSGVDTAAGIQFRANAVVICSGTFLNGLIHIGLNHYQGGRAGDPASIGL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             +  +     GRLKTGTPAR+   +I + K +KQ  +     FSFM +  +   Q+ C 
Sbjct: 189 AENLKELGLKVGRLKTGTPARIVSSSIDYSKMQKQDPEYPQPVFSFMDEADVHPTQVPCY 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  TH II   +  S +YSG I S GPRYCPSIEDK+VR+  R  HQIF+EPEGL 
Sbjct: 249 ITRTNEVTHEIIRSGLDRSPLYSGVIHSVGPRYCPSIEDKVVRYPNRTSHQIFIEPEGLT 308

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           + +VYPNGIST+LP +IQ +FI +I GLE   I RPGYAIEYD+ +P+EL  ++++KKI 
Sbjct: 309 SPLVYPNGISTSLPYDIQEKFIHSIEGLENAVIARPGYAIEYDFYDPRELSVSMQSKKIK 368

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AGIN+A           SR  +YIGVM+DDL + G  
Sbjct: 369 GLFLAGQINGTTGYEEAAAQGLLAGINAALFIKGKKPWFPSRNQAYIGVMMDDLCTLGTK 428

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP+   LG I   R   F K + E    ++ LKS 
Sbjct: 429 EPYRMFTSRAEYRLMLREDNADLRLTPVAYDLGLIDGERYSAFEKKVNEIEKEKTRLKST 488

Query: 482 VL--TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQ 537
           ++  +S+     S   K    K +   E L  P+ ++ NL   C  D    +    E+++
Sbjct: 489 LIKPSSEEAKELSKVLKTPLSKEQKLEEILRRPEANLDNLLKACKLDPIVSTEQAREQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y   +M E K+ +  EK L+P +FDY ++ ALSNE+ +KL+  KP  L  AS+
Sbjct: 549 IQIRYQGYLEHEMEEIKKREQNEKTLLPLNFDYKNISALSNEVAQKLNEYKPETLGMASR 608

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+++L++++KK
Sbjct: 609 ISGVTPAAISILMVHLKK 626


>gi|120608762|ref|YP_968440.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acidovorax citrulli AAC00-1]
 gi|166221316|sp|A1TI78|MNMG_ACIAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120587226|gb|ABM30666.1| glucose inhibited division protein A [Acidovorax citrulli AAC00-1]
          Length = 655

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/641 (45%), Positives = 397/641 (61%), Gaps = 27/641 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAITQVGIRFRARTVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFM-TDKIT 234
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM +  + 
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGTLPVFSFMGSTAMH 244

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQIF
Sbjct: 245 PRQVPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP ++Q+  +R++ GLE  +I+RPGYAIEYDY +P+ L   
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDVQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSLKSN 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV+++D
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGESAWLPRRDEAYLGVLVND 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++        
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRKRDAVARE 484

Query: 475 RSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              LKS  +  +NL    S  +  K        ++ L  PD +   L  +  D  K++S 
Sbjct: 485 TERLKSTWVNPRNLPAEESARVLGKSIEHEYNLFDLLRRPDVTYDALTGM--DGGKYAST 542

Query: 532 -------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                        VIE+++I + YA Y  RQ  E +   + E   +P++ DY  + ALS 
Sbjct: 543 AVSRETLGELSAPVIEQVEIAAKYAGYIDRQKDEVQRAFYYENLQLPQELDYMQVAALSI 602

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   +
Sbjct: 603 EVRQKLQKHRPETLGQASRISGVTPAAVSLLLVHLKKGGFR 643


>gi|299531163|ref|ZP_07044575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Comamonas testosteroni S44]
 gi|298720866|gb|EFI61811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Comamonas testosteroni S44]
          Length = 654

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/639 (45%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM ++  +
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNRAMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 245 PRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV++DD
Sbjct: 365 FETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEGPWMPRRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     +  
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDARWDSFSRKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDA 525
              LKS  +  + ++   S  +  K   +    ++ L  P      L  +      C D 
Sbjct: 485 TERLKSTWVNPRVVAPEESERVLGKAMEREYNLFDLLRRPGVDYDKLMGMNQGKYACADV 544

Query: 526 R-----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           +     + S  VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS E+
Sbjct: 545 QPEALGELSVPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALSFEV 604

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 605 RQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|257424193|ref|ZP_05600622.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426870|ref|ZP_05603272.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429506|ref|ZP_05605893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432153|ref|ZP_05608516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435114|ref|ZP_05611165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M876]
 gi|282912911|ref|ZP_06320703.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922539|ref|ZP_06330229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C101]
 gi|293497964|ref|ZP_06665818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511554|ref|ZP_06670248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M809]
 gi|293550163|ref|ZP_06672835.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273211|gb|EEV05313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276501|gb|EEV07952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279987|gb|EEV10574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283032|gb|EEV13164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257285710|gb|EEV15826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314760|gb|EFB45146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C101]
 gi|282323011|gb|EFB53330.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919210|gb|EFD96286.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096895|gb|EFE27153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465512|gb|EFF08044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M809]
          Length = 625

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 397/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T +  +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQVIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|332524941|ref|ZP_08401127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rubrivivax benzoatilyticus JA2]
 gi|332108236|gb|EGJ09460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rubrivivax benzoatilyticus JA2]
          Length = 650

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/637 (45%), Positives = 397/637 (62%), Gaps = 21/637 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QAFDVIVVGGGHAGTEAALAAARMGCTTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 65  ALGGAMAEATDESGIQFRILNGSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + ++ ++ Q         VVLT GTFL G +H+G     AGR GD  + +L 
Sbjct: 125 CDDLIVEGDRVTGVITQIGLRFNARAVVLTAGTFLDGRVHVGLENYRAGRAGDPAATTLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECG 241
               +     GRLKTGTP R+DG++I + + E+Q  D   +P F F+ T ++  RQ+ C 
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSRLEEQPGDLDPVPVFGFLGTPEMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL 
Sbjct: 245 ITHTNERTHEIIRSGFDRSPMFTGIIEGVGPRYCPSIEDKINRFADKSSHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YPNG+ST+LP ++Q   IRT+PGLE  +I+RPGYAIEYDY +P+EL P+ ET+ I 
Sbjct: 305 THEFYPNGVSTSLPFDVQLGAIRTMPGLENAHILRPGYAIEYDYFDPRELKPSFETQAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL AG N+A ++   +     R  +Y+GV++DDL +KG+ 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLFAGANAALQAQGREPWTPRRDQAYLGVLVDDLVTKGIT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG +LG +G+ R   F +  +     +  LKS 
Sbjct: 425 EPYRMFTSRAEYRLQLREDNADLRLTAIGRELGLVGDARWDAFCRKRERLEREQQRLKST 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI-----CPDARKFSSL-- 531
            +    L++              Y   + L  P      +++       PD     +L  
Sbjct: 485 WVRPATLAAADAERFIGKALEHEYNLADLLRRPGVDFDAVWAAAAAAGVPDVVSRGTLQA 544

Query: 532 ---------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    VIE+ +I   YA Y  +Q+ E +     E+  +P++ DY+ + ALS E+++
Sbjct: 545 EYGAREADAVIEQAEIAIKYAGYIDKQVDEVQRAAHYEQMKLPEELDYAQVTALSFEVRQ 604

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+  +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 605 KLTRHRPETLGQASRISGVTPAAISLLLVHLKKGRFK 641


>gi|56461730|ref|YP_157011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Idiomarina loihiensis L2TR]
 gi|81170548|sp|Q5QZI8|MNMG_IDILO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56180740|gb|AAV83462.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina loihiensis L2TR]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/623 (45%), Positives = 392/623 (62%), Gaps = 13/623 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIV+GGGHAG EAA  AA+LG  T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 6   QQHFDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M + AD AGIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q 
Sbjct: 66  DALGGVMAKAADKAGIQFRTLNSSKGPAVRATRAQADRQLYKQAIRYALETQPNLSIFQQ 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E + ++ +V Q        TVVLT GTFL G IHIG      GR GD PSN+L
Sbjct: 126 GCDDLIVENDRVTGVVTQMGLKFTAKTVVLTVGTFLGGQIHIGLDNYQGGRAGDPPSNAL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                       RLKTGTP R+   ++ +   ++Q  D     FS+M  +  + +QI C 
Sbjct: 186 AKRLRALPLRVERLKTGTPPRIASHSVDFSVMQEQPGDNPTPVFSYMGSRSDHPQQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLN
Sbjct: 246 ITHTNENTHEIIRSGLDRSPMYSGVIEGVGPRYCPSIEDKIVRFADKGSHQIFVEPEGLN 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK I+
Sbjct: 306 TFEIYPNGISTSLPFDVQQRLVQSIKGFENAHITRPGYAIEYDYFDPRDLKQSLETKVIN 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AG+N+A ++   +     R  +Y+GV+IDDL++ G  
Sbjct: 366 GLFFAGQINGTTGYEEAGAQGLIAGLNAALQAQDKESWAPRRDQAYMGVLIDDLSTLGTQ 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F K ++     +  LK+ 
Sbjct: 426 EPYRMFTSRAEYRLLLREDNADMRLTEIGRNLGLVDDERWAAFNKKMESVEQEKQRLKTT 485

Query: 482 VLTSKNLS--------STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            +   + S         + ++ +  G+       + Y D ++ + F+   +      L  
Sbjct: 486 WVHKDHASVEQINALVKSPVTKEVSGEELLRRPEIHYKDLALTDFFAPGLE----DPLAA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  RQ  E  + +  E  L+P  FDY+ +  LSNE+  KL+  +P  + 
Sbjct: 542 EQVEIQIKYAGYITRQQEEIAKQQRHENTLLPSPFDYAKIKGLSNEVVAKLNDHQPETVG 601

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           +A++I G+TPAA+++LL+++KK 
Sbjct: 602 KAARISGITPAAVSMLLVHLKKQ 624


>gi|228942632|ref|ZP_04105164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975562|ref|ZP_04136114.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982198|ref|ZP_04142487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis Bt407]
 gi|228777550|gb|EEM25828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis Bt407]
 gi|228784172|gb|EEM32199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817058|gb|EEM63151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326943281|gb|AEA19177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 629

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 395/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ I   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGICKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|237814358|ref|YP_002898809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei MSHR346]
 gi|237505862|gb|ACQ98180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei MSHR346]
          Length = 657

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 391/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +L  + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELSVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|322800358|gb|EFZ21362.1| hypothetical protein SINV_03566 [Solenopsis invicta]
          Length = 849

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/629 (46%), Positives = 409/629 (65%), Gaps = 15/629 (2%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           +IN++ +DVIV+GGGHAG EA+A A ++GA T L+T K STIG MSCNP+ GG+GKGHL+
Sbjct: 220 LINKNKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLM 279

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           RE+DALDG+  R+ D +GI +RVLN +KGPAV G R Q DR LY+  +Q E+ +   L +
Sbjct: 280 REVDALDGVCCRICDISGIHYRVLNKRKGPAVWGLRAQIDRALYKKYLQAELFNMPGLHI 339

Query: 120 IQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  V     E   +S   ++++D + I    VV+TTGTFL+G I+IG  K PAGR+ D 
Sbjct: 340 YESSVEDLILENEPLSCQGVILKDGTKIFGDAVVITTGTFLKGQINIGLEKRPAGRLNDE 399

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
           PS  L N+  +  F  GRLKTGTP RL+  +I + K +K   DE  IPFSFM+D +    
Sbjct: 400 PSIGLANTLERLGFQIGRLKTGTPPRLEKDSIDFTKCKKSLPDESPIPFSFMSDNVWLPP 459

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           ++Q+   +T TN +  +II +N+  +   + +I   GPRYCPSIE KI+RF     HQI+
Sbjct: 460 DKQVLTYLTFTNEKVAQIIRDNMHCNLHVTEEIS--GPRYCPSIESKILRFKALQ-HQIW 516

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL++ ++YP+G+S  LPE+ Q + ++ IPGLE   +IRPGY +EYDY++P+EL   
Sbjct: 517 LEPEGLDSPLIYPSGLSCTLPEDKQVELVKCIPGLENACLIRPGYGVEYDYVDPRELTTQ 576

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETKKI  LFLAGQINGTTGYEEAAAQG+VAG+N+A K  K   +  SRT+ YIGV+IDD
Sbjct: 577 LETKKIPRLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVFKKPPLLISRTEGYIGVLIDD 636

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT++G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+   R +R  K  ++    
Sbjct: 637 LTTEGTTEPYRMFTSRSEFRVSLRPDNADQRLTEKGYTIGCVSRERLERTKKVFRKMQEA 696

Query: 475 RSLLKSLVLT-SKNLSSTSISFKQDGKTRTAYEFLSY--PDFSIQNLFSICPDARKF--S 529
             +LKS V T +K     +I   +    ++A+E LS    + +   L  + PD +     
Sbjct: 697 IQILKSDVRTCTKWRQLLNIKKSKAVDHKSAFEMLSLTTEEVTFARLAKLLPDLQYLDRD 756

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSILK 588
             +  R++IE+ Y      Q  +  +IK  E+  IP D DY+S    LSNE +EKLS   
Sbjct: 757 PNLTRRIEIEAKYGYIVAEQQDQVNDIKRNEQMTIPDDIDYNSPKLNLSNEDREKLSKYL 816

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           P  +  A+KI G+TP+A+  LL Y+K ++
Sbjct: 817 PRTIAAANKISGVTPSAILRLLFYVKHHS 845


>gi|120600846|ref|YP_965420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. W3-18-1]
 gi|146295047|ref|YP_001185471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella putrefaciens CN-32]
 gi|166200614|sp|A4YCI9|MNMG_SHEPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200616|sp|A1RQC1|MNMG_SHESW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120560939|gb|ABM26866.1| glucose inhibited division protein A [Shewanella sp. W3-18-1]
 gi|145566737|gb|ABP77672.1| glucose inhibited division protein A [Shewanella putrefaciens
           CN-32]
          Length = 629

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/615 (47%), Positives = 384/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENDRVVGVVTQMGLAFESPAIVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT  
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGLNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +    D  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGMNASLQVQGKDAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDIRWAAFSEKLESIELELQRLRAQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I          L  E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPLAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLHLDYKEVPGLSNEVIAKLNSHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 VTPAAISILLVHLKK 621


>gi|307718006|ref|YP_003873538.1| glucose-inhibited division protein A [Spirochaeta thermophila DSM
           6192]
 gi|306531731|gb|ADN01265.1| glucose-inhibited division protein A [Spirochaeta thermophila DSM
           6192]
          Length = 619

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/614 (46%), Positives = 389/614 (63%), Gaps = 6/614 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA  A++LG ST LIT    TIG MSCNPA+GGL KG++VRE+DAL 
Sbjct: 4   DVIVIGGGHAGIEAALAASRLGCSTVLITQLLDTIGKMSCNPAVGGLAKGNIVREVDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MGR+ D   IQFR+LN  +GPAV+ PR QAD++ Y    +  +  Q+ L + Q  V  
Sbjct: 64  GEMGRLIDRTMIQFRMLNRSRGPAVQCPRAQADKQAYAQRAKWSLEQQKGLFLFQDTVVD 123

Query: 127 FNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           F  ++    I  +V +         VVLTTGTF+   I IG+ + P GR+G+  +  L  
Sbjct: 124 FVLDEAGREIRGVVTERGRRFHARKVVLTTGTFMEAKIFIGEYETPGGRLGEPAACGLGG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F  GRLKTGTPAR+   ++ + K ++Q  DE +IPFSF  D +  RQ+ C IT 
Sbjct: 184 VLRRLGFTVGRLKTGTPARVLRSSLDFSKMQEQPGDEEIIPFSFSHDTLEVRQVPCYITF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +Y G I   GPRYCPS+EDK+VRF +R+ HQ+F+EPEGL+T+ 
Sbjct: 244 TTPETHRIIRENLHRSPLYGGRIVGRGPRYCPSLEDKVVRFPDRDRHQVFVEPEGLSTEE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LPEE+Q  FI TIPGLE   I+RPGYA+EYDY+ P +L+PTLETK+I GL+
Sbjct: 304 MYLNGISSSLPEEVQEAFIHTIPGLEHAVIMRPGYAVEYDYVEPTQLYPTLETKRIRGLY 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQ NGT+GYEEA  QGLVAGIN+A        +   R ++YIGV+IDDL +KG  EPY
Sbjct: 364 IAGQTNGTSGYEEAGGQGLVAGINAALACRGEPPLVLGRDEAYIGVLIDDLVTKGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR D AD RL     ++G       +R  + I   + ++ LL+   L 
Sbjct: 424 RMFTSRAEYRLALRHDTADIRLLEKAYRIGLQSREMFERLQEKIHVLDAIKELLRQRRLA 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            +      +        +  Y+ L  P  ++ +L  + P+  K+    +   +I+  Y  
Sbjct: 484 QEEAEQRRLPQLAPHVGKPLYQVLKDPRVTLDDLAFLVPELSKYPRPWVRTAEIDVKYEG 543

Query: 545 YTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           Y  R  QM+E K  K E+ R IP  FDYS +  LS+E +EKLS ++P +L QAS+I G+ 
Sbjct: 544 YLLREQQMVE-KFRKMEDMR-IPDHFDYSEVEGLSSEAREKLSTIRPLSLGQASRISGIR 601

Query: 603 PAALNLLLIYIKKN 616
            + + +L++Y+ ++
Sbjct: 602 SSDIAVLMVYLSRS 615


>gi|317050325|ref|YP_004111441.1| glucose inhibited division protein A [Desulfurispirillum indicum
           S5]
 gi|316945409|gb|ADU64885.1| glucose inhibited division protein A [Desulfurispirillum indicum
           S5]
          Length = 630

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/622 (46%), Positives = 395/622 (63%), Gaps = 11/622 (1%)

Query: 1   MIN--RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M+N  R++DVIV+G GHAGCEAA  AA++G STAL +    TI  MSCNPAIGG+ KGHL
Sbjct: 1   MLNYTRTFDVIVVGAGHAGCEAALAAARMGCSTALFSINLDTIAQMSCNPAIGGVAKGHL 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V+EIDAL G M    DA GIQFR LN  KGPAVR  R QAD++LYR  M++ +  Q NL 
Sbjct: 61  VKEIDALGGEMALNIDATGIQFRTLNTSKGPAVRSSRAQADKQLYRKRMKQVLELQPNLH 120

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + Q  V G  T+  +I+ ++ Q         VVLT GTF+ G +HIG    PAGR+G+ P
Sbjct: 121 ITQDMVTGIFTQNGVIAGVISQIGVRYHARAVVLTAGTFMNGTVHIGFESFPAGRLGEPP 180

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +  L  S  +  F+ GRLKTGTPAR++  +I + + E+Q  D    PFSFM   I   Q+
Sbjct: 181 ALGLSESLQEHGFELGRLKTGTPARVNRHSIDFSRMEEQPGDPDPRPFSFMNTHIRQSQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I+ TN  TH II  NI+ SA+YSG I   GPRYCPSIEDK+V+F +++ HQ FLEPE
Sbjct: 241 PCWISWTNERTHEIIRRNIERSALYSGKITGIGPRYCPSIEDKVVKFPDKDRHQTFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +T+  Y NG+ST+LP ++Q +F RTIPGLE+V ++RP YAIEYD+I P +L  TLETK
Sbjct: 301 GYDTNEFYINGMSTSLPVDVQMEFYRTIPGLERVELMRPAYAIEYDFIPPTQLCATLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQINGT+GYEEAAAQGL+AGIN+A +++  + +   R   YIGVM+DDL +K
Sbjct: 361 PVRGLFHAGQINGTSGYEEAAAQGLLAGINAALRASGREPVTIGREQGYIGVMVDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R +RF          +  L
Sbjct: 421 GTREPYRMFTSRAEHRLVLREDNADLRLTELGRRVGLVSDERYRRFEIKRTMVEAEKKRL 480

Query: 479 KSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           ++L +      N     +      +   A   L   +   ++L  +        + V E+
Sbjct: 481 QNLTVKPAPEVNQLLAELGTAVLAEPLRAAALLKRHEVHYKHLVQMGAGLAGLPADVREQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFE---EKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           ++I+  Y  Y  R   E K I+ +   ++  IP  FDY S+  LS E++ KL  ++P  L
Sbjct: 541 VEIQLQYEGYIQR---EEKFIQHQMKLDRVQIPASFDYESVSGLSREVRTKLLEIRPATL 597

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+TPAA+++L I+++
Sbjct: 598 GQALRISGVTPAAVSVLSIHLE 619


>gi|21241151|ref|NP_640733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24636868|sp|Q8PQE8|MNMG_XANAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21106455|gb|AAM35269.1| glucose inhibited division protein A [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 634

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 390/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|221214301|ref|ZP_03587273.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD1]
 gi|221165956|gb|EED98430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD1]
          Length = 656

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P      +  +    C  A   +      +
Sbjct: 487 TPKTLPPEEATALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGDCGPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|187933395|ref|YP_001887733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B str. Eklund 17B]
 gi|187721548|gb|ACD22769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B str. Eklund 17B]
          Length = 626

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/614 (45%), Positives = 397/614 (64%), Gaps = 9/614 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVVVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N I+ ++ ++ ++ R   V+L+TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEDNKITGVITKNGAIFRAKAVILSTGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSGNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKENIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    + +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEEPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G + E R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTEERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 N------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                  L+S S   K   K  + YE +  P+    +L  + P+  + S  + E++ I +
Sbjct: 491 RETNEFLLASGSAELK---KPISFYELIKRPEVDYFSLKDLDPEREELSEDIGEQINIIA 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ +KP ++ QAS+I G
Sbjct: 548 KYEGYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIKPISIGQASRISG 607

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLIY++
Sbjct: 608 VSPADISVLLIYLE 621


>gi|119952976|ref|YP_945185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia turicatae 91E135]
 gi|119861747|gb|AAX17515.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Borrelia turicatae 91E135]
          Length = 628

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/624 (46%), Positives = 404/624 (64%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  +D IVIGGGHAG EA+   ++L   T LIT    TIG +SCNPAIGGL KG++VRE
Sbjct: 7   IDMDFDAIVIGGGHAGIEASLALSRLNFKTLLITQNLDTIGKLSCNPAIGGLAKGNMVRE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  +GPAV+ PR QAD+ +Y++  +  +  Q NLD+ Q
Sbjct: 67  IDALGGEMGCLVDFSMIQFRILNKSRGPAVQAPRAQADKLVYQVKAKETLERQINLDLFQ 126

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+ F  N+ +N I  +V +  +      VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 127 DTVSDFLLNSMRNRIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYRACMGRISEPAA 186

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  F+ GRLKTGTPAR+  K+I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 187 YGLEKILLELGFEMGRLKTGTPARVHRKSINFAKTEIQFGDSDIIPFSFSNTKIDKVQLS 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II +N+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 247 CYITYTNKKTHAIISDNMHLSPLYSGEIIGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y NG+S++LPE++Q + I +I GLE   I RPGYA+EYDYINP EL+ +LETK+
Sbjct: 307 LSTEEMYLNGLSSSLPEDVQKRLINSIDGLENAVITRPGYAVEYDYINPIELYASLETKR 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A K    D +   RT SYIGV+IDDL +KG
Sbjct: 367 VKGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQGKDPMILPRTSSYIGVLIDDLVTKG 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 427 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQVEEIKELLR 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  +  S+  +   +   ++  Y  +  P  ++ +L  I P     S +++E+++++
Sbjct: 487 QRRLKEREASTLQL---KKHISKDFYHIIKDPYINLSDLIDIDPKLNA-SKVILEQVELD 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DFDY  +  LS E +EK   ++P NL QAS+I 
Sbjct: 543 IKYEGYINRQKDLIRKMNNLELIKLPLDFDY-EIDGLSREAREKFVKIQPANLAQASRIS 601

Query: 600 GMTPAALNLLLIYIK--KNTVKLN 621
           G+    + +LLIY    KN V LN
Sbjct: 602 GVRNTDIQVLLIYFSSPKNKVVLN 625


>gi|228911323|ref|ZP_04075127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 200]
 gi|228848341|gb|EEM93191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 200]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 394/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGICKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|315185860|gb|EFU19625.1| glucose inhibited division protein A [Spirochaeta thermophila DSM
           6578]
          Length = 619

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/614 (46%), Positives = 389/614 (63%), Gaps = 6/614 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA  A++LG +T LIT    TIG MSCNPA+GGL KG++VRE+DAL 
Sbjct: 4   DVIVIGGGHAGIEAALAASRLGCTTLLITQLLDTIGKMSCNPAVGGLAKGNIVREVDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MGR+ D   IQFR+LN  +GPAV+ PR QAD++ Y    +  +  Q+ L + Q  V  
Sbjct: 64  GEMGRLIDRTMIQFRMLNRSRGPAVQCPRAQADKQAYAQRAKWSLEQQKGLFLFQDTVVD 123

Query: 127 FNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           F  ++    I  +V +         VVLTTGTF+   I IG+ + P GR+G+  +  L  
Sbjct: 124 FVLDEAGREIRGVVTERGRRFHARKVVLTTGTFMEAKIFIGEYETPGGRLGEPAACGLGG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F  GRLKTGTPAR+   ++ + K ++Q  DE +IPFSF  D +  RQ+ C IT 
Sbjct: 184 VLRRLGFTVGRLKTGTPARVLRSSLDFSKMQEQPGDEEIIPFSFSHDTLEVRQVPCYITF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +Y G I   GPRYCPS+EDK+VRF +R+ HQ+F+EPEGL+T+ 
Sbjct: 244 TTPETHRIIRENLHRSPLYGGRIVGRGPRYCPSLEDKVVRFPDRDRHQVFVEPEGLSTEE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LPEE+Q  FI TIPGLE   I+RPGYA+EYDY+ P +L+PTLETK+I GL+
Sbjct: 304 MYLNGISSSLPEEVQEAFIHTIPGLEHAVIMRPGYAVEYDYVEPTQLYPTLETKRIRGLY 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQ NGT+GYEEA  QGLVAGIN+A        +   R ++YIGV+IDDL +KG  EPY
Sbjct: 364 IAGQTNGTSGYEEAGGQGLVAGINAALACRGEPPLVLGRDEAYIGVLIDDLVTKGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR D AD RL     ++G        R  + I   + ++ LL+   LT
Sbjct: 424 RMFTSRAEYRLALRHDTADIRLLEKAYRIGLQSREMFDRLQEKIHVLDAIKELLRQRRLT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            +      +        +  Y+ L  P  ++ +L  + P+  K+    +   +I+  Y  
Sbjct: 484 QEEAERRGLPQLAPHVGKPLYQVLKDPRVTLDDLAFLVPELSKYPRPWVRTAEIDVKYEG 543

Query: 545 YTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           Y  R  QM+E K  K E+ R IP  FDYS +  LS+E +EKLS ++P +L QAS+I G+ 
Sbjct: 544 YLLREQQMVE-KFRKMEDMR-IPDHFDYSEVEGLSSEAREKLSTIRPLSLGQASRISGIR 601

Query: 603 PAALNLLLIYIKKN 616
            + + +L++Y+ ++
Sbjct: 602 SSDIAVLMVYLSRS 615


>gi|228924228|ref|ZP_04087499.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835446|gb|EEM80816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 396/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|30023507|ref|NP_835138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus ATCC 14579]
 gi|38372296|sp|Q814F7|MNMG_BACCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29899068|gb|AAP12339.1| Glucose inhibited division protein A [Bacillus cereus ATCC 14579]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 395/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMAYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|323496917|ref|ZP_08101945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sinaloensis DSM 21326]
 gi|323317991|gb|EGA70974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sinaloensis DSM 21326]
          Length = 631

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/623 (46%), Positives = 389/623 (62%), Gaps = 9/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAKAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E +    +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDKAVGVVTQMGLRFRAEAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ + + E Q  D     FSFM  +  + +QI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSELEVQHGDNPTPVFSFMGQRSQHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQNKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDERWARFNEKVENMAKERQRLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKF-SSLVI 533
              +  K  S    +  Q  K+  A E      L  P+ +   L  +   A         
Sbjct: 482 ETWMNPK--SEGIDALNQLLKSPMAREASGEDLLRRPEMTYDQLTQLEAFAPAMEDQQAA 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E ++    E   +P D DY+ +  LSNE+  KLS  KP ++ 
Sbjct: 540 EQVEIQVKYEGYIKRQQDEIEKSLRHENTKLPVDLDYAKVSGLSNEVVAKLSQAKPESIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
            AS+I G+TPAA+++LL+++KK+
Sbjct: 600 IASRISGITPAAISILLVHLKKH 622


>gi|77361915|ref|YP_341490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123589145|sp|Q3IK39|MNMG_PSEHT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76876826|emb|CAI88048.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/621 (46%), Positives = 401/621 (64%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +Q+NL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQDNLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENFKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ + K ++Q  D  +  FSFM     + +QI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSKMQEQAGDTPIPVFSFMGKPSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +Y G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITFTNEKTHDVIRKNLHRSPMYGGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQIEIVQSITGFENAHICRPGYAIEYDFFDPRDLKRSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    +     R ++Y+GV+IDDLT+ G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKESWTPRRDEAYVGVLIDDLTTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + + + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAYNEKMEVIAKEKQRIK 481

Query: 480 SLVLTSKNLSSTSI-SFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
              +   +     + +  +   TR A   E L  P+    +L +I     +F++   +E+
Sbjct: 482 DTWIHKDHTMIDQVNALLKTPLTREASLEELLRRPEIRYNDLMAIDGLGSEFTNQAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIVRQQDEINKQLRHEQTILPKEFDYKTVSGLSNEVVAKLIDARPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA++LLL+Y+KK 
Sbjct: 602 SRISGITPAAISLLLVYLKKQ 622


>gi|289551830|ref|YP_003472734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus lugdunensis HKU09-01]
 gi|289181361|gb|ADC88606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus lugdunensis HKU09-01]
          Length = 626

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/623 (45%), Positives = 400/623 (64%), Gaps = 7/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MTQNYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  + +LD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEAHLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N++  +     +      VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDDLIIEDNVVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG +LG I E R  RF +  Q    E + L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDIGYELGMISEARYARFNEKRQQIQDEIDRLTHI 480

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +K    T   + +   S  +DG    A + L  P+ +   +  I  +A +    V E++
Sbjct: 481 RIKPNAHTQSVIEAHGGSQLKDGI--LAIDLLRRPEMTYDTILEILGEAHQLPEAVAEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEQKKIPEDLDYSKVDSLATEAREKLAKVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +++LL+Y+++  ++
Sbjct: 599 RISGVNPADISILLVYLEQGKLQ 621


>gi|285017165|ref|YP_003374876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           protein [Xanthomonas albilineans GPE PC73]
 gi|283472383|emb|CBA14888.1| probable trna uridine 5-carboxymethylaminomethyl modification
           enzyme gida protein [Xanthomonas albilineans]
          Length = 630

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/617 (46%), Positives = 382/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 9   YDVIVIGGGHAGTEAALASARAGAGTLLLTHNMETVGAMSCNPAIGGIGKGHLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 69  GGAMAQAADLAGIQWRTLNASKGPAVRATRCQADRSLYRNAIRRLVEAQPNLTVFQAAVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  ++ Q         VVLT GTFL G IHIG+ +   GR GD P+ +L  +
Sbjct: 129 DLVMDGERVRGVLTQTGLRFEAGAVVLTAGTFLAGKIHIGQTQYAGGRAGDPPATALAQA 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP R+DG+++ +   E+Q  D  L   SF+ D   + RQ+ C IT 
Sbjct: 189 LRDGRFGVDRLKTGTPPRIDGRSLDYTAMEEQPGDAPLPVMSFLGDVAQHPRQVSCWITH 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL+   
Sbjct: 249 TTERTHAIIRGALDRSPLYTGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLDVVE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK + GLF
Sbjct: 309 IYPNGISTSLPFDVQLELVRSIRGFERAHITRPGYAIEYDFFDPRGLKASLETKAMPGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+   L+     R  +YIGV+IDDL + G  EPY
Sbjct: 369 FAGQINGTTGYEEAAAQGLIAGLNAARQVQGLEPWSPRRDQAYIGVLIDDLITHGTSEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + E R  RF             L+    T
Sbjct: 429 RMFTSRAEYRLQLREDNADARLTGIGRELGLVDEARWARFQTKQDAVARENERLRGFWAT 488

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQI 538
             N     ++        +     + +  P+     L  +    P      + V E+++I
Sbjct: 489 PSNALGREVAATLGVAVSRETNVLDLIKRPELDYAALMRVPLLGPGV--ADTQVAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E    +  E   IP  FDY+ +  LS E+++KL  ++P  + QA +I
Sbjct: 547 GIKYAGYLERQREEIARQQRHEDTTIPTAFDYAQVRGLSAEVQQKLQRVRPQTVGQAQRI 606

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA++LLL+++++
Sbjct: 607 PGMTPAAISLLLVHLER 623


>gi|268593523|ref|ZP_06127744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rettgeri DSM 1131]
 gi|291310947|gb|EFE51400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rettgeri DSM 1131]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/621 (46%), Positives = 394/621 (63%), Gaps = 13/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   QFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++  + +     +   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENNRVTGAITRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + +Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQDQHPQQMPCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRDLKQTLESKFIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG+N+A+ +  L+     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGLNAAQHAFGLEGWFPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWAHFNNKVELIEKERQRLKDIWV 485

Query: 484 TSKNLSSTSI--------SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             K+ + T I        S + +G+       ++Y   +  NLF+   D  + +    ++
Sbjct: 486 HPKSDNHTEIDGILTVPLSKEANGEDLLRRPEMTYKMLTSLNLFAPGIDDPQAA----DQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QA
Sbjct: 542 VEIQVKYEGYIARQKEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGITPAAISILLVWLKKQ 622


>gi|224823521|ref|ZP_03696630.1| glucose inhibited division protein A [Lutiella nitroferrum 2002]
 gi|224603976|gb|EEG10150.1| glucose inhibited division protein A [Lutiella nitroferrum 2002]
          Length = 630

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 393/618 (63%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G ST L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   TFDVIVVGGGHAGTEAALAAARMGCSTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q+NL + Q  V
Sbjct: 66  LGGAMALATDIGGIQFRTLNASKGPAVRATRAQADRVLYKAAIRHVLENQDNLTLFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++  +       R  TVVLT GTFL G IH+G      GR GD+ +++L  
Sbjct: 126 DDLLIEGDRVAGAITAIGITFRAKTVVLTAGTFLSGKIHVGLENYTGGRAGDAAASTLGA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
              + D   GRLKTGTP R+DG+T+ +   E+Q  D     FS+   + +  +Q+ C IT
Sbjct: 186 RLRELDLPVGRLKTGTPPRIDGRTVDFSVMEEQPGDTPEPVFSYRGSRSLHPKQLPCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II    + S +++G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T 
Sbjct: 246 HTNERTHEIIRSGFERSPMFTGVIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 306 EFYPNGISTSLPFDVQLAAVRSIRGMENAHILRPGYAIEYDYFDPRGLKSTLETKSIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A  S   D  C  R ++Y+GV++DDL +KGV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAALYSRDQDGWCPRRDEAYLGVLVDDLITKGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT  G +LG +G+ +   F +        ++ LK+  L
Sbjct: 426 YRMFTSRAEFRLQLREDNADLRLTEAGRRLGLVGDAQWDAFCRKRDAVEAEKTRLKTTYL 485

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
               +   +++    K   +    ++ L  PD S   L ++           V E+++I+
Sbjct: 486 HPAKVDMAAVAQLLGKPIEREYNLHDLLKRPDVSYTALMTLAEAGGGVDDGAVAEQVEIQ 545

Query: 540 SSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
             Y  Y  RQ  E A+    E+ RL P D DYS +  LS E+++KL+  +P  L QAS+I
Sbjct: 546 VKYQGYIDRQNDELARRDNLEDVRL-PADIDYSLVKGLSKEVQQKLNSQRPETLGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKN 616
           +G+TPAA+ LL++++K+ 
Sbjct: 605 QGITPAAVALLMVHLKRG 622


>gi|183597128|ref|ZP_02958621.1| hypothetical protein PROSTU_00367 [Providencia stuartii ATCC 25827]
 gi|188023438|gb|EDU61478.1| hypothetical protein PROSTU_00367 [Providencia stuartii ATCC 25827]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/622 (46%), Positives = 394/622 (63%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAIATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++  V +     +   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENNTVTGAVTRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + +Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQDQHPQQMPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I+GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFINGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG+N+A+ +  L+     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGLNAAQYAFDLEGWFPRRDQAYMGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWAHFNNKVELIEKERQRLKDIWV 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
             K+        + S  +S + +G+     + L  P+   Q L S+   A   +     +
Sbjct: 486 HPKSEGHDEINQILSVPLSKEANGE-----DLLRRPEMDYQTLISLSRFAPGITDPQAAD 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK 
Sbjct: 601 ASRISGITPAAISILLVWLKKQ 622


>gi|229130729|ref|ZP_04259682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-Cer4]
 gi|228652746|gb|EEL08631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-Cer4]
          Length = 629

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 395/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMAYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|317131001|ref|YP_004097283.1| glucose inhibited division protein A [Bacillus cellulosilyticus DSM
           2522]
 gi|315475949|gb|ADU32552.1| glucose inhibited division protein A [Bacillus cellulosilyticus DSM
           2522]
          Length = 628

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/617 (45%), Positives = 390/617 (63%), Gaps = 3/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 8   YDVIVIGAGHAGVEAGLAAARMGANTLMLTLNLDAVAYMPCNPSVGGPAKGIVVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I   ENL + QG V 
Sbjct: 68  GGEMAKNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEETENLLLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ ++ Q  +     +VV+TTGT+LRG + IG L   +G     PS +L   
Sbjct: 128 RLIIENDKVTGVITQTGAEYYAKSVVITTGTYLRGKVIIGDLSYESGPNNQQPSVNLSYH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  R KTGTP R++ +TI + KTE Q  DE    FS+ T K    Q+ C +T T
Sbjct: 188 LQELGFEMVRFKTGTPPRVNSQTIDYSKTEIQPGDEVPRAFSYETTKYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  V
Sbjct: 248 NDETHSIINSNLDRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++QH  +R+IPGLE V ++RPGYAIEYD I P +L+P+LETKKI GLF 
Sbjct: 308 YVQGLSTSLPEDVQHHILRSIPGLEGVTMMRPGYAIEYDAIVPTQLWPSLETKKIEGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL+AGIN+ARK+   + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGLMAGINAARKAQNKESVILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT- 484
           + TSRAEYR+ LR DNAD RLT IG ++G I   R  +F    ++    +  L S ++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKSERFDQFLSKKEQIEREKDRLASTIVKV 487

Query: 485 --SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               N   T I      +       L  P+ +  ++  I P   K    V E+++I+  Y
Sbjct: 488 TEETNQFLTEIGSSPLKEPMYGVGLLKRPEITYTHIAQIVPPLEKLDDDVAEQVEIQVKY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q+ +  ++K  E + +P+D DY ++  L+ E K+KLS ++P ++ QAS++ G+ 
Sbjct: 548 EGYISKQLEQVDKLKKMENKKLPEDLDYHAINGLATEAKQKLSEVRPLSMAQASRVSGVN 607

Query: 603 PAALNLLLIYIKKNTVK 619
           PA +++LL+Y+++  ++
Sbjct: 608 PADVSILLVYMEQGKLQ 624


>gi|328952164|ref|YP_004369498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452488|gb|AEB08317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfobacca acetoxidans DSM 11109]
          Length = 631

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/617 (44%), Positives = 388/617 (62%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAGCE A  AA++G    +      TI  M+CNPA+GGL KGHLV+EIDA
Sbjct: 7   SYDLIVIGAGHAGCEGALAAARMGLKVLIFNLNLDTIAHMACNPAVGGLAKGHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++G +AD  GIQFR+LN  KGPAVRG R Q D++ YRLAM+  +  +  + + +  V
Sbjct: 67  LGGVIGYLADQTGIQFRLLNTSKGPAVRGTRIQCDKQAYRLAMKAHLEKEPLVHIREAMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   I  +        R   V++TTGTFL G+IHIG  + PAGR G+  S  L  
Sbjct: 127 DRLLTEDGRIVGVQESYGFCYRARAVLITTGTFLNGLIHIGPHQTPAGRAGEFASTKLAA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GR+KTGTP RL   +I +   ++    +R   FS+ + ++   QI C +T 
Sbjct: 187 NLQELGFRLGRMKTGTPPRLRASSIDFSGMDRLEGSDRPYHFSWRSTRVDRPQISCFVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  THR + +NI+HS +YSG IK    RYCPS+EDK++RF E+  HQ+ LEPEGL+T  
Sbjct: 247 TNGTTHRWVRDNIRHSPLYSGVIKGISARYCPSLEDKVMRFPEKTSHQVTLEPEGLDTVE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+   LP EIQ Q  R++PGLE   ++RP YAIEYDY+ P +L PTLETK I GLF
Sbjct: 307 IYAKGLGNCLPVEIQLQLFRSVPGLEAAEVMRPAYAIEYDYVYPTQLLPTLETKAIRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAAAQGL AG+N+A +          R+ +Y+ V++DDL +KG  EPY
Sbjct: 367 LAGQINGTSGYEEAAAQGLWAGVNAACQILGRPPFLLDRSQAYMAVLVDDLVTKGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-----RQKRFAKYIQEYNFLRSLLK 479
           RMFTSRAEYR+ LR DNAD RLT IG  LG +  +     ++K+     +E       L 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEIGAALGLVDRQALEALQEKKRLLAEEEARLAGKRLF 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L   ++ L S S S   + K  T + + L  P+  +  L+++  +     + ++E+++I
Sbjct: 487 PLPEVNQALRSRSSS---ELKEPTPFLKLLKRPELDLPTLYTLAGEVPGAPAAILEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ+   K+    EK+ +P+DFDY ++P LSNE+++KL  ++P +L QA++I
Sbjct: 544 RHKYEGYINRQLEAVKQFVHLEKKRLPQDFDYDAIPGLSNEVRQKLKDIRPLSLGQAARI 603

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA+ +LL+Y+K+
Sbjct: 604 SGVTPAAIAILLVYLKR 620


>gi|218234811|ref|YP_002370258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus B4264]
 gi|228961747|ref|ZP_04123350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229051152|ref|ZP_04194696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH676]
 gi|229112896|ref|ZP_04242427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-15]
 gi|229148033|ref|ZP_04276372.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST24]
 gi|296505911|ref|YP_003667611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis BMB171]
 gi|218162768|gb|ACK62760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus B4264]
 gi|228635458|gb|EEK91949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST24]
 gi|228670575|gb|EEL25888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-15]
 gi|228722215|gb|EEL73616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH676]
 gi|228797941|gb|EEM44951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296326963|gb|ADH09891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis BMB171]
          Length = 629

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 395/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|221069725|ref|ZP_03545830.1| glucose inhibited division protein A [Comamonas testosteroni KF-1]
 gi|220714748|gb|EED70116.1| glucose inhibited division protein A [Comamonas testosteroni KF-1]
          Length = 654

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/639 (45%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
               +     GRLKTGTP R+DG++I + + E+Q  D       E  +P FSFM ++  +
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNRAMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 245 PRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV++DD
Sbjct: 365 FETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGESPWMPRRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     +  
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDVRWDSFSRKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLF----------SI 521
              LKS  +  + ++   S  +  K   +    ++ L  P      L            +
Sbjct: 485 TERLKSTWVNPRVVAAEESERVLGKAMEREYNLFDLLRRPGVDYDKLMDMNQGKYASADV 544

Query: 522 CPDA-RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
            P+A  + S  VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS E+
Sbjct: 545 QPEALGELSDPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALSFEV 604

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 605 RQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|282902628|ref|ZP_06310521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C160]
 gi|282921287|ref|ZP_06329005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C427]
 gi|282315702|gb|EFB46086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C427]
 gi|282597087|gb|EFC02046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C160]
          Length = 625

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 397/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY++++ ++
Sbjct: 601 SGVNPADISILLIYLEQSKLQ 621


>gi|296417422|ref|XP_002838357.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634285|emb|CAZ82548.1| unnamed protein product [Tuber melanosporum]
          Length = 686

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/632 (45%), Positives = 394/632 (62%), Gaps = 18/632 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ +DV+VIGGGHAG EA A AA++GA TAL+T K  TIG+ SCNP+ GG+GKG ++RE
Sbjct: 38  LNQEFDVVVIGGGHAGSEACAAAARVGAKTALVTQKIDTIGTCSCNPSFGGIGKGIMIRE 97

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDG+ GR+ D AGIQFRVLN  KGPAV GPR Q DR+LY+  MQ E++S  NL ++Q
Sbjct: 98  VDALDGVCGRITDKAGIQFRVLNRSKGPAVWGPRAQIDRKLYKKYMQEELMSYPNLSILQ 157

Query: 122 GEVA-------------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           G VA             G       I+ + ++   +I+   VV+TTGTFL G IHIG   
Sbjct: 158 GSVADVVVDRVPEGQMIGMEGHYGKITGVRLESGEVIKARNVVITTGTFLGGEIHIGLTV 217

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+GRMG++ +  L  S  +  F  GRLKTGTP R+DG+TI +     Q  D+  IPFS+
Sbjct: 218 FPSGRMGEAATFGLSKSLREAGFKLGRLKTGTPPRIDGRTIDYKSLLPQLGDDPPIPFSY 277

Query: 229 MTDKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           M +K+   +Q++C  T T  E+H ++ ++   S      IK  GPRYCPS+E KI+RF +
Sbjct: 278 MNEKVQIEQQLQCHSTHTTPESHNLLRQHFHESIHIRETIK--GPRYCPSLESKIIRFEK 335

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R  H I+LEPEG++  VVYPNGIS  +P E+Q + ++TIPGLE+  +++PGY +EYDYI+
Sbjct: 336 RQNHMIWLEPEGIDDHVVYPNGISMTVPAEVQERLLKTIPGLEEAKMLQPGYGVEYDYID 395

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L  TLETK + GLFLAGQINGTTGYEEAAAQG+VAGIN+   S     +  SR+D+Y
Sbjct: 396 PRSLRATLETKIVKGLFLAGQINGTTGYEEAAAQGVVAGINAGLSSQGKPQMTISRSDAY 455

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG+MIDDL +KGV EPYRMFTSR+E+R+S R DNAD RLT  G   G +G+ R   F   
Sbjct: 456 IGIMIDDLITKGVSEPYRMFTSRSEFRMSSRADNADLRLTQAGRDHGVVGDARWAHFQTE 515

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDA 525
                  RS L ++  +S       +  ++D   R A+  L   + +I  L    +    
Sbjct: 516 FSLMEDFRSALSNITQSSSEWRKRGLVVREDSARRNAFHLLRLSNMTIGKLAEMGVVGGL 575

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            ++   +  R+ IE  Y  Y  RQ    K  + +E   +P D DY  +  LS E +  L 
Sbjct: 576 DRWPERIRTRVGIEGVYEPYVTRQANAVKMFEKDEGLKLPADIDYDRVLGLSYEERVVLK 635

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            ++P ++ QA ++EG+   + N++ + I K T
Sbjct: 636 RVRPESIGQARRVEGVRYLSCNIMDLSILKLT 667


>gi|157964062|ref|YP_001504096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella pealeana ATCC 700345]
 gi|189039358|sp|A8HAH4|MNMG_SHEPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157849062|gb|ABV89561.1| glucose inhibited division protein A [Shewanella pealeana ATCC
           700345]
          Length = 629

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 381/620 (61%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q  V 
Sbjct: 67  GGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q         VVLT GTFL G IHIG      GR GD P+ +L + 
Sbjct: 127 DLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPAIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D+ L   SF+ D   +  Q+ C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQVSCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDK+ RF ++  HQIF+EPEGLNT  
Sbjct: 247 TNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPEGLNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTIAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSI------CPDARKFSSLVIER 535
            +  L            TR A   + L  P+     L SI        D R       E+
Sbjct: 487 PNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  K++  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++KK
Sbjct: 602 SRISGMTPAAISILLVHLKK 621


>gi|229153642|ref|ZP_04281818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1550]
 gi|228629828|gb|EEK86481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1550]
          Length = 629

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 395/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|146309631|ref|YP_001190096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas mendocina ymp]
 gi|166222721|sp|A4Y198|MNMG_PSEMY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145577832|gb|ABP87364.1| glucose inhibited division protein A [Pseudomonas mendocina ymp]
          Length = 630

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 9/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMATATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAVREILENQANLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENAQVKGVVTQMGLRFHADSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSMALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D      SF+  +    +QI C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPTPLMSFLGKREHQPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGCNAALRAQGKEAWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDERWAAFEAKREGIVREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                  +I+ +    T  A+E+     L+ P+     L  I  ++    + V E+++I+
Sbjct: 487 PGTPQGDAIAARFG--TPLAHEYNLLNLLARPEIDYAALAEIT-ESPAVDNQVAEQVEIK 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E   ++  E   +P+D DYS++  LS E++ KL   +P  L QA +I 
Sbjct: 544 TKYAGYIDRQQDEIARLRASEDTKLPEDLDYSAISGLSKEIQFKLGNTRPATLGQAGRIP 603

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LLLI++KK + 
Sbjct: 604 GVTPAAISLLLIHLKKRSA 622


>gi|295429294|ref|ZP_06821916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295127053|gb|EFG56697.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 625

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVDRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|229106077|ref|ZP_04236690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-28]
 gi|228677343|gb|EEL31607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-28]
          Length = 629

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETTNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETK I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKNIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|221202191|ref|ZP_03575226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2M]
 gi|221208748|ref|ZP_03581747.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2]
 gi|221171380|gb|EEE03828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2]
 gi|221177985|gb|EEE10397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2M]
          Length = 656

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    ++++  K      +  E L  P      +  +    C  A   +      +
Sbjct: 487 TPKTLPPEEASALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGECGPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|330505867|ref|YP_004382736.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Pseudomonas mendocina NK-01]
 gi|328920153|gb|AEB60984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas mendocina NK-01]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/617 (46%), Positives = 387/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMATATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAVREILENQANLWIFQQAAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 128 DLIVENAEVKGVVTQMGLRFHANSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAHR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D      SF+  +    +QI C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPTPLMSFLGKREHQPKQISCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQVVRSIRGMENAHIMRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGCNAALRAQGKEAWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDERWAAFEAKREGIAKEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +        Y     L+ P+     L  +  +A    + V E+++I++ 
Sbjct: 488 PGTPQGDAIAARFGTPLTHEYNLLNLLARPEIDYATLVELT-EAPVVDNQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E  +++  E   +P+D DYS++  LS E++ KL   +P  L QA +I G+
Sbjct: 547 YAGYIDRQQDEIAKLRASEDTKLPEDLDYSAISGLSKEIQFKLGNTRPATLGQAGRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK + 
Sbjct: 607 TPAAISLLLIHLKKRSA 623


>gi|258423241|ref|ZP_05686133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9635]
 gi|257846570|gb|EEV70592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9635]
 gi|323439702|gb|EGA97420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus O11]
 gi|323443275|gb|EGB00892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus O46]
          Length = 625

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|50302213|ref|XP_451040.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640171|emb|CAH02628.1| KLLA0A00935p [Kluyveromyces lactis]
          Length = 686

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 407/626 (65%), Gaps = 23/626 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  S DV+V+G GHAGCEAAA +A+ GA T LIT     IG+ SCNP++GG+GKG L+RE
Sbjct: 41  IATSVDVVVVGAGHAGCEAAAGSARSGAETMLITPFLDKIGTCSCNPSMGGVGKGTLLRE 100

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDG+  +V D AGIQF++LN  +G AV GPR Q DRELY   MQ  + +  NL +  
Sbjct: 101 VDALDGVAAKVTDKAGIQFKMLNQSRGAAVWGPRAQIDRELYLKEMQNALQNYPNLTLFS 160

Query: 122 GEV----------AGFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           G+V            F  + N      +  +V+ ++ +I+CS VV++TGTFL   IHIG 
Sbjct: 161 GKVKDVIIDHTLKVSFANDVNNRNFGDVRGVVLDNDEVIKCSKVVISTGTFLSAEIHIGL 220

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             IPAGR+G++P+  + ++     F  GRLKTGTPARLDG+TI +   EKQ+ D+   P 
Sbjct: 221 KTIPAGRIGEAPTYGISHTLKAAGFKLGRLKTGTPARLDGRTIDFTNLEKQYGDDPPYPM 280

Query: 227 SFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           S+M ++++ + QI C  TRT  E H  +  N+  S      +K  GPRYCPS+E KI+RF
Sbjct: 281 SYMNNEVSIKDQILCYGTRTTSELHDYLKLNLHQSIHIRETVK--GPRYCPSLEAKIIRF 338

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ H+I+LEPEGLNTDV+YPNGIS ++PE++Q   +R IPGLE V I++P Y +EYDY
Sbjct: 339 SDKDSHRIWLEPEGLNTDVIYPNGISNSMPEDVQEIMMRMIPGLENVKILQPAYGVEYDY 398

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           ++P+EL  TLETK I GL+LAGQINGTTGYEEA AQG+VAGIN+   +     +  SR+D
Sbjct: 399 VDPRELKQTLETKLIDGLYLAGQINGTTGYEEACAQGVVAGINAGLSARGRPPLILSRSD 458

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SY GV+IDDL +KGV EPYRMFTSR+E+R+++R DNAD RLT  G KLG + E R +RF 
Sbjct: 459 SYTGVLIDDLITKGVEEPYRMFTSRSEFRVTVRADNADFRLTEKGKKLGVVSEERWQRFL 518

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
                Y  L + LKS VL++        ++     K++ A++   +   ++ +L    PD
Sbjct: 519 LDKTIYRELENTLKSYVLSNHKWDQLLDVAVGSTHKSQNAWDMFKFNGVTLDSLIKAIPD 578

Query: 525 ARKFSS----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               SS     ++ ++ +E+ YA Y  RQ    K  + +E  L+P ++DY+ +P++S+E 
Sbjct: 579 LSIDSSEIPVHILLKINVEAKYAPYLKRQNQFIKAFQADENMLLPLNYDYTKIPSISSEC 638

Query: 581 KEKLSILKPFNLLQASKIEGMTPAAL 606
           K  L+ ++P  + QA +I+GMTPA++
Sbjct: 639 KTILNTVQPATIGQARRIQGMTPASI 664


>gi|15925701|ref|NP_373235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15928296|ref|NP_375829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus N315]
 gi|21284358|ref|NP_647446.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49484906|ref|YP_042130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49487488|ref|YP_044709.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148269142|ref|YP_001248085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150395224|ref|YP_001317899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156981026|ref|YP_001443285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141512|ref|ZP_03566005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253316837|ref|ZP_04840050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253733842|ref|ZP_04868007.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255007482|ref|ZP_05146083.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793535|ref|ZP_05642514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9781]
 gi|258420937|ref|ZP_05683871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9719]
 gi|258438576|ref|ZP_05689799.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9299]
 gi|258443968|ref|ZP_05692306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A8115]
 gi|258446216|ref|ZP_05694376.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6300]
 gi|258449125|ref|ZP_05697231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6224]
 gi|258454397|ref|ZP_05702365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5937]
 gi|282894276|ref|ZP_06302506.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8117]
 gi|282907044|ref|ZP_06314892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910023|ref|ZP_06317831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912271|ref|ZP_06320067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282918065|ref|ZP_06325815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus D139]
 gi|282927747|ref|ZP_06335361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A10102]
 gi|283767787|ref|ZP_06340702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959481|ref|ZP_06376922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295406861|ref|ZP_06816665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8819]
 gi|296275690|ref|ZP_06858197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297209455|ref|ZP_06925853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245896|ref|ZP_06929758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8796]
 gi|297589204|ref|ZP_06947845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MN8]
 gi|300911479|ref|ZP_07128928.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379945|ref|ZP_07362674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54037191|sp|P64230|MNMG_STAAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|54037192|sp|P64231|MNMG_STAAW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|54041306|sp|P64229|MNMG_STAAM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56748944|sp|Q6G5W5|MNMG_STAAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56748997|sp|Q6GD93|MNMG_STAAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200618|sp|A7X7A7|MNMG_STAA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039360|sp|A6U594|MNMG_STAA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039362|sp|A5IWD6|MNMG_STAA9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|13702668|dbj|BAB43808.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus N315]
 gi|14248486|dbj|BAB58873.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21205802|dbj|BAB96494.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243035|emb|CAG41769.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49245931|emb|CAG44412.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147742211|gb|ABQ50509.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947676|gb|ABR53612.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156723161|dbj|BAF79578.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253728145|gb|EES96874.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787507|gb|EEV25847.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9781]
 gi|257843127|gb|EEV67542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9719]
 gi|257848135|gb|EEV72127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9299]
 gi|257850852|gb|EEV74796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A8115]
 gi|257855042|gb|EEV77985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6300]
 gi|257857558|gb|EEV80453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6224]
 gi|257863491|gb|EEV86251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5937]
 gi|269942297|emb|CBI50712.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282318350|gb|EFB48710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323967|gb|EFB54283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326089|gb|EFB56394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329943|gb|EFB59464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590507|gb|EFB95585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A10102]
 gi|282763321|gb|EFC03451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8117]
 gi|283461666|gb|EFC08750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus H19]
 gi|283789073|gb|EFC27900.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285818374|gb|ADC38861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus 04-02981]
 gi|294968326|gb|EFG44351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8819]
 gi|296885916|gb|EFH24851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177261|gb|EFH36514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8796]
 gi|297577715|gb|EFH96428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MN8]
 gi|300887658|gb|EFK82854.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|302752588|gb|ADL66765.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304341525|gb|EFM07435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312436862|gb|ADQ75933.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312831049|emb|CBX35891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129540|gb|EFT85532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195223|gb|EFU25611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|329315431|gb|AEB89844.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329725763|gb|EGG62242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 625

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|82752289|ref|YP_418030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus RF122]
 gi|123549493|sp|Q2YZB9|MNMG_STAAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|82657820|emb|CAI82275.1| glucose inhibited division protein A [Staphylococcus aureus RF122]
          Length = 625

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|75761489|ref|ZP_00741453.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218900624|ref|YP_002449035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus G9842]
 gi|228905427|ref|ZP_04069382.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 4222]
 gi|228968635|ref|ZP_04129618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|74491028|gb|EAO54280.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218545582|gb|ACK97976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus G9842]
 gi|228791064|gb|EEM38682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854247|gb|EEM98950.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 4222]
          Length = 629

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 394/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGMCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|203287637|ref|YP_002222652.1| glucose inhibited division protein A [Borrelia recurrentis A1]
 gi|201084857|gb|ACH94431.1| glucose inhibited division protein A [Borrelia recurrentis A1]
          Length = 626

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/624 (46%), Positives = 402/624 (64%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +D IVIGGGHAG EA+   A+L   T LIT    T+G +SCNPAIGGL KG++VRE
Sbjct: 5   IGMDFDAIVIGGGHAGIEASLALARLNFKTILITQNLDTVGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  KGPAV+ PR QAD+ +Y++  +  +  Q NL++ Q
Sbjct: 65  IDALGGEMGCLVDFSMIQFRILNKSKGPAVQAPRAQADKLVYQIKAKETLEMQNNLELFQ 124

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+ F  N  KN I  +V +  +      VVLTTGTFLRG I IG+ K   GR+ +  +
Sbjct: 125 DTVSDFLLNPMKNKIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYKAYMGRISEPAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  F+ GRLKTGTPAR+  ++I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 185 FGLEKILLELGFEMGRLKTGTPARVHRRSINFAKTEIQFGDSDIIPFSFSNTKIDKTQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           +NT  +Y NG+S++LPE++Q + I +I GLE   I R GYA+EYDYINP EL+ +LETK+
Sbjct: 305 INTQEMYLNGLSSSLPEDVQKRLINSIDGLEDAVITRSGYAVEYDYINPIELYASLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A K  K + +   RT SYIGV+IDDL +KG
Sbjct: 365 VEGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQKKEPMILPRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQIEEIKELLR 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  K  SS  +   +    +  Y  +  P  ++++L +I P     S +++E+++++
Sbjct: 485 HRRLKEKEASSFEL---KRHINKDFYHIVKDPYINLKDLVNIDPKLNA-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DF+Y  +  LS E +EK   ++P NL QAS++ 
Sbjct: 541 IKYEGYINRQKDLIRKMNNLELIKLPLDFNY-EIDGLSREAREKFVKIQPANLAQASRVS 599

Query: 600 GMTPAALNLLLIYIK--KNTVKLN 621
           G+    + +LLIY    KN V LN
Sbjct: 600 GVRNTDIQVLLIYFSNPKNKVVLN 623


>gi|21229855|ref|NP_635772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66766732|ref|YP_241494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|24636867|sp|Q8PDG1|MNMG_XANCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170591|sp|Q4UZP9|MNMG_XANC8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21111356|gb|AAM39696.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572064|gb|AAY47474.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 634

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/630 (46%), Positives = 396/630 (62%), Gaps = 30/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 68  GGAMAKAADLAGIQWRTLNASKGPAVRATRCQADRNLYRSAIRRIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q       + VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGAAEGDSVRGVITQTGLRFEATAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---TDKITNRQ 237
           +L     +  F   RLKTGTP R+DG+T+ +   ++Q  D+ L   SFM   +D  T  Q
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYTMMDEQPGDDPLPVMSFMGQVSDHPT--Q 245

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EP
Sbjct: 246 VSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGPRYCPSIEDKVVRFADKTSHQIFVEP 305

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LET
Sbjct: 306 EGLDVTEIYPNGISTSLPFDVQLALVRSIRGFAQAHITRPGYAIEYDFFDPRGLKASLET 365

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLF AGQINGTTGYEEAAAQGL+AG+N+AR++  L      R ++Y+GV++DDL +
Sbjct: 366 KAVGGLFFAGQINGTTGYEEAAAQGLLAGLNAARQAQALPAWSPRRDEAYLGVLVDDLIT 425

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + 
Sbjct: 426 HGTTEPYRMFTSRAEYRLQLREDNADLRLTGVGRAMGLVDDARWARFSSKQEAVQRETAR 485

Query: 478 LKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDA 525
           L +L  T  N      + +  +   ++       + +  P+ S   L  +        DA
Sbjct: 486 LSALWATPGNALGREVVDTLGVPMSRETNV---LDLIKRPELSYAALMRVPTLGPGVDDA 542

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     V E+++I   YA Y  RQ  E    +  E   IP+ FDY+ +  LS E+++KL 
Sbjct: 543 Q-----VAEQVEIGVKYAGYLNRQRDEIARQQRHETTPIPEGFDYAGVRGLSMEVQQKLE 597

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P ++ QA +I GMTPAA++LLL+++++
Sbjct: 598 RVRPQSIGQAQRIPGMTPAAISLLLVHLER 627


>gi|113972263|ref|YP_736056.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. MR-4]
 gi|114049512|ref|YP_740062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. MR-7]
 gi|123129966|sp|Q0HD68|MNMG_SHESM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123325561|sp|Q0HPF0|MNMG_SHESR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113886947|gb|ABI40999.1| glucose inhibited division protein A [Shewanella sp. MR-4]
 gi|113890954|gb|ABI45005.1| glucose inhibited division protein A [Shewanella sp. MR-7]
          Length = 629

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/620 (47%), Positives = 388/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q         VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLVVENDRVVGVITQMGLAFEAPAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIQGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A +    +  C  R ++YIGV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNAALQVQGKEAWCPRRDEAYIGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL-- 478
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++    E   LRS    
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWASFSEKLESIELELQRLRSQWIH 486

Query: 479 --KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
               LV       +T IS     +  +  E L  P+     L  I       +  L  E+
Sbjct: 487 PNSPLVPVLNPHLNTPIS-----REASFEELLRRPEMDYSKLMQIEGFGPGLADPLAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|229164434|ref|ZP_04292362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus R309803]
 gi|228619039|gb|EEK75937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus R309803]
          Length = 629

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I + R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKDERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + +T  S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNTGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPEDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|152998468|ref|YP_001343303.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinomonas sp. MWYL1]
 gi|189039345|sp|A6W3T9|MNMG_MARMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150839392|gb|ABR73368.1| glucose inhibited division protein A [Marinomonas sp. MWYL1]
          Length = 629

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/620 (47%), Positives = 393/620 (63%), Gaps = 9/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGVKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M    D AGIQFR LN +KGPAVR  R QADR LY+ A++ ++ +QENL + Q    
Sbjct: 67  DGAMALATDQAGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHKLENQENLWLFQQSAE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q        TVVLT GTFL GVIHIG      GR GD PS  L   
Sbjct: 127 DLIVENGAARGVITQTGIRFNSKTVVLTAGTFLGGVIHIGLENHSGGRAGDPPSIGLAQK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP R+D +++ + + + Q  D+     S+M ++  + RQIEC IT 
Sbjct: 187 LRALPFRVDRLKTGTPPRIDARSVDFSQMQAQPGDDIDPVMSYMGNRAMHPRQIECFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  
Sbjct: 247 TNERTHDIIRAGMDRSPMYTGVIEGVGPRYCPSIEDKIVRFADKNSHQIFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R++ G+E  +IIRPGYAIEYDY NP++L  +LETK + GLF
Sbjct: 307 LYPNGISTSLPFDVQIELVRSMKGMENAHIIRPGYAIEYDYFNPQDLKYSLETKHMPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A  + + D     R ++Y+GV++DDL S G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAALLAQEKDAWTPRRDEAYLGVLVDDLISMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        L+S  + 
Sbjct: 427 RMFTSRAEYRLILREDNADMRLTEKGRELGLVSDERWAAFCKKREAIELETQRLRSSWIV 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDF---SIQNLFSICPDARKFSSLVIERLQI 538
                + SI+ K +      Y   + L  P+     I NL +   +       V E++QI
Sbjct: 487 PNTPEADSINPKLETPITHEYSLLDLLKRPNIVYSDIANLKNGLDEP--VDEQVSEQVQI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  + + ++ +E   +P D DYS +  LSNE+K+KL+ L+P  L  AS+I
Sbjct: 545 AVKYAGYISRQAEDIERLRRQENTELPDDLDYSKMEGLSNEIKQKLTQLRPATLAAASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
           +G+TPAA++LLLI++KK  +
Sbjct: 605 QGVTPAAVSLLLIHLKKRAI 624


>gi|229099910|ref|ZP_04230833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-29]
 gi|229118973|ref|ZP_04248318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-3]
 gi|228664498|gb|EEL19994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-3]
 gi|228683525|gb|EEL37480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-29]
          Length = 629

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETK I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKNIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|325525645|gb|EGD03419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia sp. TJI49]
          Length = 656

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  +   +  +    C  A   +      +
Sbjct: 487 TPKTLPPEEATALLGKAIDHEYSLAELLRRPGITYDGVCGLKGGECGPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|258411159|ref|ZP_05681438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9763]
 gi|257840044|gb|EEV64509.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9763]
          Length = 625

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIVLEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|107104666|ref|ZP_01368584.1| hypothetical protein PaerPA_01005745 [Pseudomonas aeruginosa PACS2]
          Length = 620

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/610 (47%), Positives = 379/610 (62%), Gaps = 5/610 (0%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           +IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL G M
Sbjct: 1   MIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDALGGAM 60

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
               D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q        
Sbjct: 61  AEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACDDLIV 120

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L     + 
Sbjct: 121 EQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARRLREL 180

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLE 248
               GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT TN  
Sbjct: 181 PLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITHTNAR 240

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
           TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  +YPN
Sbjct: 241 THEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHELYPN 300

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           GIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF AGQ
Sbjct: 301 GISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLFFAGQ 360

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           INGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPYRMFT
Sbjct: 361 INGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPYRMFT 420

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           SRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  +     
Sbjct: 421 SRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVRPNTP 480

Query: 489 SSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +I+ +        Y     LS P+     L  I  DA   +  V E+++I + YA Y
Sbjct: 481 QGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTKYAGY 539

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+TPAA
Sbjct: 540 IDRQQEEISRLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGVTPAA 599

Query: 606 LNLLLIYIKK 615
           ++LLLI++KK
Sbjct: 600 ISLLLIHLKK 609


>gi|289620137|emb|CBI53581.1| unnamed protein product [Sordaria macrospora]
          Length = 717

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/629 (45%), Positives = 396/629 (62%), Gaps = 14/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPFDVVVIGGGHAGSEACAAAARAGARTALVTPSVENLGVCSCNPSFGGIGKGIMIREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL+GL GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ E+ S  NL ++   
Sbjct: 100 ALEGLAGRIIDKAGVQFRVLNSKKGPAVWGPRAQIDRALYKKHMRAELESYPNLSLVYNS 159

Query: 124 VAGFNTEKN---------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+     +N          I+ + ++   ++  S V++TTGTFL G IHIG    P+GRM
Sbjct: 160 VSDIVVSENDDPSTGAKTKITGVRLESGEVLPTSQVIITTGTFLGGEIHIGMEAYPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  S  +  F  GRLKTGTP RLD K+I +   E+Q+ D+   PFS++ D +T
Sbjct: 220 GEKATFGLSKSLREAGFKLGRLKTGTPPRLDKKSINFGVLEEQYGDDPPRPFSYLNDAVT 279

Query: 235 NR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            + Q+ C  T TN  TH I+ +N+  +      +K  GPRYCPS+E KI+RF ++  H +
Sbjct: 280 VKDQLHCWATYTNHATHEIVRQNLDKTIHIRETVK--GPRYCPSLEAKIIRFSDKQRHLV 337

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG + D++YPNG+S  +P E Q   +RTIPGLE V + +PGY +EYDY++P+ L  
Sbjct: 338 WLEPEGFDNDIIYPNGLSMTVPAEAQLALLRTIPGLEDVIMTQPGYGVEYDYVDPRSLKR 397

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I GL+LAGQINGTTGYEEAA QG+VAGIN+ R +   + +  SR D YIGVMID
Sbjct: 398 TLETKAIRGLWLAGQINGTTGYEEAAGQGIVAGINAGRAAIGREPVTLSRADGYIGVMID 457

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+E+R++ R DNAD+RLT +G   G +G+RR   F     +   
Sbjct: 458 DLITKGVSEPYRMFTSRSEFRMTTRSDNADSRLTALGRSWGVVGDRRWSHFQTENGQMAE 517

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF--SICPDARKFSSL 531
           LR +L   +L+ +  ++     K D + R+A+E L +   S++ L    + P    FS  
Sbjct: 518 LRRILSETILSPQAWANAGFDVKADTRKRSAFELLCFKGVSMEKLHESGVVPKLMDFSER 577

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V ER  IE  YA    +  +E  +++ EE   +P D DY ++  LS   K  L   +P +
Sbjct: 578 VRERTFIEGLYAPQIDKHALERAKLEREEDLRLPLDLDYDAIINLSLAEKGVLKATRPES 637

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           L QA +IEGMTPA    LL ++K+   +L
Sbjct: 638 LAQARRIEGMTPAGCMRLLAHVKRRNGEL 666


>gi|153838485|ref|ZP_01991152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ3810]
 gi|149748108|gb|EDM58967.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ3810]
          Length = 631

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 293/624 (46%), Positives = 388/624 (62%), Gaps = 11/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IRGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAYE-----FLSYPDFSIQNLFSICPDARKF-SSLV 532
           S   T  N +S  I    +  KT  A E      L  P+ S   L  +   A        
Sbjct: 482 S---TWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++
Sbjct: 539 AEQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPVDLDYKDVKGLSNEVVAKLSEAKPESI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
             AS+I G+TPAA+++LL+++KK+
Sbjct: 599 GIASRISGITPAAISILLVHLKKH 622


>gi|262198171|ref|YP_003269380.1| glucose inhibited division protein A [Haliangium ochraceum DSM
           14365]
 gi|262081518|gb|ACY17487.1| glucose inhibited division protein A [Haliangium ochraceum DSM
           14365]
          Length = 640

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 396/626 (63%), Gaps = 19/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A+LGA T ++T     +  MSCNPAIGG+ KGH+V+EIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALASARLGARTLVLTGNLEMVAQMSCNPAIGGVAKGHIVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M ++ D  GIQ+R LN+ KGPAVR  R QAD+ LYR  M++ + +Q  L + Q EV
Sbjct: 67  LGGQMAQIIDRTGIQYRRLNLSKGPAVRSTRAQADKRLYRETMRQALDAQAGLYLRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E   I  +  +     R   V+LTTGTFLRG I++G  +   GR G++PS  L  
Sbjct: 127 SELLVEDGAIRGVGTKMGVSFRARAVILTTGTFLRGRIYVGDARAEGGRAGEAPSVGLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIECG 241
           S     F   RLKTGTP RLDG+T+      +Q  D+    F+ + +        Q +C 
Sbjct: 187 SLAANGFPLARLKTGTPCRLDGRTLDLAGLTRQPGDDPPPMFTNLAETGVAPPLPQHDCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII ++I  S ++ G I+  GPRYCPSIEDK+VRF +R  HQ+FLEPEG++
Sbjct: 247 LTYTTPETHRIIRDSIHRSPLHQGIIEGVGPRYCPSIEDKVVRFADRERHQVFLEPEGVD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +   YPNGIST+LP ++Q   +RTIPGLE+  + RPGYA+EYD+++P+EL PTLET+++ 
Sbjct: 307 SREFYPNGISTSLPYDVQLAMLRTIPGLERAEMTRPGYAVEYDFVDPRELRPTLETRRVC 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARK----SNKLDCICFSRTDSYIGVMIDDLTS 417
           GL+L GQINGT+GYEEAA QGL+AGIN+A K       +D +   R  +Y GV++DDL +
Sbjct: 367 GLYLGGQINGTSGYEEAAVQGLLAGINAALKLGFGPGDMDELVLRRDQAYAGVLVDDLIT 426

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRMFTSRAEYR+ LR DNA  RL PIG +LG I ++R +RF  +  +       
Sbjct: 427 KGTKEPYRMFTSRAEYRLILREDNAACRLMPIGRRLGLIDDQRWRRFEAFRADLAAHSER 486

Query: 478 LKSLVLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-- 531
           +++  L+     +  +    S     +  T  E L  P+ S Q++  +  +A   + +  
Sbjct: 487 MQATSLSPDAAVNARLEACGSSPLKNRRATLVELLRRPELSYQDVAQVA-EAGGLAPVPV 545

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEI-KFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
              V ER++IE+ YA Y  RQ+ EA  + +FE  RL P D DY  +  LS E  EKLS  
Sbjct: 546 PERVAERIEIEAKYAGYLDRQVNEAARLARFEAVRL-PDDLDYGEIRGLSREAVEKLSAA 604

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P ++ QA++I G+TPAA+++L+ ++
Sbjct: 605 RPRSVGQAARISGVTPAAVSILMTHL 630


>gi|325922968|ref|ZP_08184678.1| glucose-inhibited division protein A [Xanthomonas gardneri ATCC
           19865]
 gi|325546549|gb|EGD17693.1| glucose-inhibited division protein A [Xanthomonas gardneri ATCC
           19865]
          Length = 634

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/622 (46%), Positives = 390/622 (62%), Gaps = 14/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRTLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   TE + +  ++ Q         VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLLIHNGATEGDSVRGVITQTGLRFEAPAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM  +  + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYSVMAEQPGDDPLPVMSFMGQRSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITHTTEQTHDIIRSALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVTEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQALPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + L+
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFSSKQEAVQRESARLQ 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVI 533
           +L  T  N     ++        +     + +  P+ +   L    ++ P      + V 
Sbjct: 488 ALWATPGNALGREVAQTLGVAVSRETNVLDLIKRPELNYAALMRVPTLGPGVD--DTQVA 545

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   YA Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ 
Sbjct: 546 EQVEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLERVRPQSIG 605

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA +I GMTPAA++LLL+++++
Sbjct: 606 QAQRIAGMTPAAISLLLVHLER 627


>gi|294010015|ref|YP_003543475.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Sphingobium japonicum UT26S]
 gi|292673345|dbj|BAI94863.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Sphingobium japonicum UT26S]
          Length = 616

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/614 (47%), Positives = 401/614 (65%), Gaps = 1/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAGCEAA  AA+ GA+  L+T + +T+G+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SYDVIVVGGGHAGCEAAGAAARKGAAVTLLTFERATVGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL+ R ADAA I +R+LN  KG AV+GPR QADR+ YR  + R + +Q  L++++GE 
Sbjct: 64  LDGLIARAADAAAIHYRMLNSSKGAAVQGPRVQADRKRYRAEIHRLLDAQSGLEIVEGEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G    +  ++ + + D   +   +VVL TGTFL G +  G+  +  GR+ +  + +L  
Sbjct: 124 VGLLLAEGAVAGLSLADGRRLHAPSVVLATGTFLGGKLFRGEETLTGGRISERAATALGV 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                D   GRLKTGTP R+DG+TI W   E Q +D      S ++      Q+ C ITR
Sbjct: 184 QLRALDLPMGRLKTGTPPRIDGRTIDWAALEAQPSDAEGWTMSALSPGRPLPQLSCAITR 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL+  +
Sbjct: 244 TNDRTHAIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVIRFGDRDGHQIFLEPEGLDDHL 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q   +R++ GLEK +I  PGYA+EYD+I+P+ L  TLE + I GLF
Sbjct: 304 VYPNGISTSLPADVQLAMVRSMAGLEKADIRVPGYAVEYDHIDPRALDATLEVQAIPGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A ++     +   R  SYIGVMIDDL  +GV EPY
Sbjct: 364 CAGQINGTTGYEEAAAQGLLAGINAAARARGEGPLILDRASSYIGVMIDDLVLQGVTEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM T+RAEYR+ LR DNA  RL  IG + G +GE R   +A+   E   +   L S   +
Sbjct: 424 RMLTARAEYRLRLRADNAGTRLAEIGFEHGVLGEERAAYYARRHDERAAVEEEL-SRTFS 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  ++ +    +QDG  R+ +E+  +P+     L  + P   + S  + E L  ++ YA 
Sbjct: 483 ATEMARSGAPVRQDGARRSLFEWARFPEVGRSLLCELAPTLSRISHDLREELLEDAHYAP 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E  E++  E+ +IP  FD++++  LS E+ E+L++ +P  L  A +I G+TPA
Sbjct: 543 YLERQEAEIAEMRRNERVVIPAGFDFAAIGGLSTEMVERLTLARPDTLAAAGRIRGITPA 602

Query: 605 ALNLLLIYIKKNTV 618
           AL  LL++I++   
Sbjct: 603 ALAALLVHIRRRAA 616


>gi|269962683|ref|ZP_06177028.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832606|gb|EEZ86720.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 631

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/625 (45%), Positives = 391/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVDQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           S  +   +        L  T ++ +  G+       +SY   +  + F+   + ++ S  
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLTEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+++KK+
Sbjct: 598 IGIASRISGITPAAISILLVHLKKH 622


>gi|313671978|ref|YP_004050089.1| glucose inhibited division protein a [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938734|gb|ADR17926.1| glucose inhibited division protein A [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 621

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/624 (47%), Positives = 384/624 (61%), Gaps = 29/624 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A++GA T L+T    TI  MSCNPAIGGL KG LV++IDA
Sbjct: 7   NYDVIVVGAGHAGIEAAFASARMGAKTLLLTIYIETIAQMSCNPAIGGLAKGCLVKDIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  DA GIQFR+LN KKGPAVR  R QAD++LYR  M  ++LS+ NLDV Q  V
Sbjct: 67  LGGEMAKCIDATGIQFRILNRKKGPAVRSSRAQADKKLYRQYMTNKLLSEPNLDVKQAVV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +      + +C ++VLTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 127 TDILVKDGAVIGVECDTGYIFKCRSLVLTTGTFLNGLIHIGDKRYPAGRANEFPSIHLAE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +  F+  RLKTGTPARL   TI ++  E+Q  D    PFSF T+ IT  Q+ C I  
Sbjct: 187 SLKRLGFEVQRLKTGTPARLHADTINFNLLEEQKGDNPPEPFSFETEAITLPQVSCFIAY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+II +N+  S +YSG I+  GPRYCPSIEDK+ +F ++N HQIFLEPEGL+T  
Sbjct: 247 TNEHTHQIIRDNMHRSPLYSGVIQGIGPRYCPSIEDKVKKFPDKNRHQIFLEPEGLDTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP ++Q    R++ GLEKV  IRP YAIEYD++ P ELF TLETKKI GLF
Sbjct: 307 IYANGFSSSLPIDVQIAMYRSLVGLEKVEFIRPAYAIEYDFVQPYELFHTLETKKIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AGIN+    +    +   R +S+IGVMIDDL  KGV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGIIAGINAVLSIDNKQFV-LGRDESFIGVMIDDLVMKGVDEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMF SR+EYR+ LR DNA+ RL   G  LG I   R  RF   I E   L   L  L   
Sbjct: 426 RMFHSRSEYRLLLREDNAEYRLLDKGYSLGIIPRSRYDRF---IHEKTLLEDCLGVL--- 479

Query: 485 SKNLSSTSISFKQDGKTRTAY--------------EFLSYPDFSIQNLFSICPDARKFSS 530
                 ++I    + KT+  +              + L  P+  I +L    P+   +  
Sbjct: 480 ------SNIKVPYNSKTKDKFATLGVNIEGSIPLIDLLKRPEVEISDLLEFFPN--NYPD 531

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++ + +I   Y  Y  +Q  EA  ++  E   IP + DYS +  L  E  EKL+   P 
Sbjct: 532 RILNQAEISVKYEGYIKKQKEEAGRLQKIEGVKIPDNIDYSKIVGLRREYVEKLNKFNPK 591

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
            L QA +I+GMTPAA++L+ +YIK
Sbjct: 592 TLGQALRIKGMTPAAVSLIHVYIK 615


>gi|320539761|ref|ZP_08039422.1| glucose-inhibited cell-division protein [Serratia symbiotica str.
           Tucson]
 gi|320030164|gb|EFW12182.1| glucose-inhibited cell-division protein [Serratia symbiotica str.
           Tucson]
          Length = 629

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/616 (46%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + ++ NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAIRTALENKPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +     V Q     R   VVLT GTFL G IHIG      GR GD  + SL  
Sbjct: 126 DDLIVENDHAVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLKNYRGGRAGDPTAISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI +     Q  D  +  FSFM +   +  Q  C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTINFSVLMPQQGDTPVPVFSFMGNASQHPEQRTCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHEVIRNNLDRSPMYSGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  SY+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYANQDEGWAPRRDQSYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  R+ + ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRDLGLVDDVRWARYCEKLEHIEQERQRLRDIWM 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              ++N+   ++  K    +     E L  P+     L S+   +     +   E+++I+
Sbjct: 486 HPHAENVEQVNLLLKTPLSREANGEELLRRPEMDYSLLTSVAAFSPALEDTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYQGYIARQQEEIEKQQRNENTVLPLDLDYCQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA+++LLI++KK
Sbjct: 606 GITPAAISILLIWLKK 621


>gi|172059160|ref|YP_001806812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ambifaria MC40-6]
 gi|205831492|sp|B1YQK2|MNMG_BURA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171991677|gb|ACB62596.1| glucose inhibited division protein A [Burkholderia ambifaria
           MC40-6]
          Length = 656

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   + S+    C  A   +       
Sbjct: 487 TPKTLPPKEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGECAPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|260774535|ref|ZP_05883448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio metschnikovii CIP 69.14]
 gi|260610441|gb|EEX35647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio metschnikovii CIP 69.14]
          Length = 631

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/626 (46%), Positives = 393/626 (62%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENMPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E++ +  +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAADDLIVEQDHVRGVVTQMGLKFHAKSVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDARSVDFSQLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFSDKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMQGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + E+R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKAYQLGLVCEQRWARFNQKVEHMQQERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
              +   +        L  T IS + +G+     + L  P+ + Q + SI   +     S
Sbjct: 482 ETWINPTSTDAEALNALLKTPISREANGE-----DLLRRPEMTYQQVTSIATFSPAIEDS 536

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYEGYIQRQRDEIEKSLRHEHTKLPADLDYQQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            L  AS+I G+TPAA+++LL+++KK 
Sbjct: 597 TLGIASRISGITPAAISILLVHLKKQ 622


>gi|138897066|ref|YP_001127519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus thermodenitrificans NG80-2]
 gi|196249887|ref|ZP_03148583.1| glucose inhibited division protein A [Geobacillus sp. G11MC16]
 gi|166222936|sp|A4ITX0|MNMG_GEOTN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134268579|gb|ABO68774.1| Glucose inhibited division protein A [Geobacillus
           thermodenitrificans NG80-2]
 gi|196210763|gb|EDY05526.1| glucose inhibited division protein A [Geobacillus sp. G11MC16]
          Length = 629

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +Q+NL ++QG+V
Sbjct: 67  LGGEMGKNIDKTYIQIRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQKNLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITQTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDEEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R + F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQAFLAKKEAIEREKKRLQTVII- 485

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K         +Q G +       A + L  P+ + +++  + P     +  V E+++I+
Sbjct: 486 -KPTPEVQEVIRQAGGSELKDGIRAADLLRRPEMTYEHIQKLAPADEDIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDAIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|117918461|ref|YP_867653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. ANA-3]
 gi|166200615|sp|A0KR28|MNMG_SHESA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117610793|gb|ABK46247.1| glucose inhibited division protein A [Shewanella sp. ANA-3]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/620 (47%), Positives = 388/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + +  +V Q         VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLVVDNDRVVGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIQGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A +    +  C  R ++YIGV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNAALQVQGKEAWCPRRDEAYIGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL-- 478
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++    E   LRS    
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWASFSEKMESIELELQRLRSQWIH 486

Query: 479 --KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
               LV       +T IS     +  +  E L  P+     L  I       +  L  E+
Sbjct: 487 PNSPLVPVLNPHLNTPIS-----REASFEELLRRPEMDYSKLMQIEGFGPGLADPLAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|254995222|ref|ZP_05277412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Mississippi]
          Length = 631

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/590 (46%), Positives = 373/590 (63%), Gaps = 6/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 32  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 91

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 92  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 151

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 152 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 211

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 212 RSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 271

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R+
Sbjct: 272 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLRS 331

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 332 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 391

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 392 GANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADM 451

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 452 RLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKTA 511

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 512 FELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 571

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 572 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 621


>gi|229026924|ref|ZP_04183247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1272]
 gi|228734382|gb|EEL85053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1272]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + +   +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVDRMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|254250984|ref|ZP_04944302.1| Glucose-inhibited division protein A subfamily [Burkholderia dolosa
           AUO158]
 gi|124893593|gb|EAY67473.1| Glucose-inhibited division protein A subfamily [Burkholderia dolosa
           AUO158]
          Length = 656

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+   +   +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRVEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +      +
Sbjct: 487 TPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQANEIERNDANENTRLPDGIDYRDVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|87122925|ref|ZP_01078790.1| glucose-inhibited division protein A [Marinomonas sp. MED121]
 gi|86161798|gb|EAQ63098.1| glucose-inhibited division protein A [Marinomonas sp. MED121]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 387/619 (62%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARTGVKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGAMALATDKGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHTLENQENLWLFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +V Q     +  TVVLT GTFL G+IH+G      GR GD PS  L   
Sbjct: 127 DLIVEDGCARGVVTQTGIRFQSKTVVLTAGTFLGGLIHVGLENHAGGRAGDPPSIGLAEK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
                F   RLKTGTP R+D +++ +   + Q  D+     S+M  + +   QI C IT 
Sbjct: 187 LRALPFRVDRLKTGTPPRIDARSVDFSVMQAQPGDDITPVMSYMGSRDLHPAQINCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +Y+G I   GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  
Sbjct: 247 TNEKTHDIIRGGMDRSPMYTGVIDGIGPRYCPSIEDKIVRFADKNSHQIFVEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R++ G E  +I RPGYAIEYDY NP++L  +LETK + GLF
Sbjct: 307 LYPNGISTSLPFDVQIELVRSMKGFENAHITRPGYAIEYDYFNPQDLKYSLETKHMPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++  + + +  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGVNASLLAQEKEAWCPRRDEAYIGVLVDDLITMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F    +     ++ LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDERWAAFCAKKEAIETEQARLKSNWIV 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
                + +I+ K +      Y   + L  P    +++ ++   P+    S  V E++QI 
Sbjct: 487 PNTDEAAAINPKLENPITHEYSLMDLLKRPGVEYKDVANLKNAPE-EPVSEQVAEQVQIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  + + ++ +E   +P D DYS++  LSNE+K+KL   KP  L  AS+I+
Sbjct: 546 VKYAGYISRQAEDIERLRRQENTPLPVDMDYSNIEGLSNEVKQKLIEAKPATLAAASRIQ 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LLLI +KK  +
Sbjct: 606 GITPAAVSLLLISLKKRAI 624


>gi|225867464|ref|YP_002752842.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB102]
 gi|225788645|gb|ACO28862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB102]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G+LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGELKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEDRYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|229014649|ref|ZP_04171763.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides DSM 2048]
 gi|228746660|gb|EEL96549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides DSM 2048]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRSL-LK 479
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +  QE   L S+ +K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEVTYEHIHLLVPSEVPLSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LLIYI++  +
Sbjct: 605 GVNPADVSILLIYIEQGKI 623


>gi|163943163|ref|YP_001648047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus weihenstephanensis KBAB4]
 gi|229136308|ref|ZP_04265055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST196]
 gi|229170186|ref|ZP_04297872.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH621]
 gi|205831488|sp|A9VTL9|MNMG_BACWK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163865360|gb|ABY46419.1| glucose inhibited division protein A [Bacillus weihenstephanensis
           KBAB4]
 gi|228613287|gb|EEK70426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH621]
 gi|228647180|gb|EEL03268.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST196]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRSL-LK 479
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +  QE   L S+ +K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LLIYI++  +
Sbjct: 605 GVNPADVSILLIYIEQGKI 623


>gi|71279490|ref|YP_271685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Colwellia psychrerythraea 34H]
 gi|81170535|sp|Q47U38|MNMG_COLP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71145230|gb|AAZ25703.1| glucose inhibited division protein A [Colwellia psychrerythraea
           34H]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/617 (46%), Positives = 383/617 (62%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EA+  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   SYDVIVVGGGHAGTEASLAAARMGCKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D + IQFR LN  KGPAVR  R QADR LYR  ++  + +QENL + Q   
Sbjct: 66  LGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNTLENQENLTIFQQPC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +  Q     +  +VVLT GTFL G+IHIG      GR GD  S +L  
Sbjct: 126 DDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQGGRAGDPASVNLAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   RLKTGTP RLD +++ +   E+Q  D     FSFM  +  +  QI C IT
Sbjct: 186 KMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGDTPSPVFSFMGSQADHPEQISCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+ I + +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T 
Sbjct: 246 HTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADKSSHQIFVEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   +R+I G E   I RPGYAIEYDY +P++L  +LE+K +  L
Sbjct: 306 EVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDPRDLKQSLESKFVQNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGL+AG N+A +  + D     R  +Y+GV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYMGVLIDDLATLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ R +RF + ++     R  L+S  +
Sbjct: 426 YRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKMENVELERQRLRSTWV 485

Query: 484 TSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              +     I+        K  +  + +  P+ +  +L  I         S   E+++I+
Sbjct: 486 QKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLGPAIEDSQASEQIEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ+ E  + K  E   IP+DFDY  +  LSNE+  KL    P  + +AS+I 
Sbjct: 546 TKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSNEVVAKLKDACPETIGKASRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++LLL+Y+KK+
Sbjct: 606 GITPAAISLLLVYLKKH 622


>gi|24376230|ref|NP_720274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella oneidensis MR-1]
 gi|81170576|sp|Q8E8A9|MNMG_SHEON RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24351293|gb|AAN57717.1|AE015908_2 glucose-inhibited division protein A [Shewanella oneidensis MR-1]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 297/620 (47%), Positives = 388/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q       S VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDTPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++YIGV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYIGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL-- 478
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++    E   LRS    
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKMESIELELQRLRSQWIH 486

Query: 479 --KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
               LV       +T IS     +  +  E L  P+     L  I       +  L  E+
Sbjct: 487 PNSPLVPVLNPHLNTPIS-----REASFEELLRRPEMDYNKLMQIEGFGPGLADPLAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|329732221|gb|EGG68571.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 625

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIENDEVKGVRTNIGTEYHSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|189190196|ref|XP_001931437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973043|gb|EDU40542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 657

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/626 (46%), Positives = 400/626 (63%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIVIGGGHAGCEA+A AA+ GA TALIT     +G  SCNP+ GG+GKG ++R
Sbjct: 1   MRHAPYDVIVIGGGHAGCEASAAAARSGARTALITPSVHNLGVCSCNPSFGGIGKGTMIR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID+LDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ EIL  + L V+
Sbjct: 61  EIDSLDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKEYMKNEILGYKGLSVV 120

Query: 121 QGEVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           +G VA          G   +   I+ + ++   +I+   VV+TTGTFL G IHIG    P
Sbjct: 121 EGSVADIIVDRSQEEGSKGQYGRITGVRLESGEIIQTENVVITTGTFLGGEIHIGLEAYP 180

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           +GRMG++ +  L  S     F  GRLKTGTP RLD  TI +   E Q  D   +PFS++ 
Sbjct: 181 SGRMGEAATFGLSKSLKDAGFTLGRLKTGTPPRLDANTIDYKVLEAQEGDYPPMPFSYLN 240

Query: 231 DKI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +++   +Q+    TRTN  TH II +N+  S      +K  GPRYCPS+E K++RF ++ 
Sbjct: 241 ERVQVEKQLLNHETRTNEATHDIIRQNLDKSIHIRETVK--GPRYCPSLESKVIRFADKT 298

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG N +VVYPNGIS  +P ++Q+  ++TI GLE V++++PGY +EYDY++P+
Sbjct: 299 SHIIWLEPEGFNNNVVYPNGISCTVPADVQNTMLKTIKGLENVSMLQPGYGVEYDYVDPR 358

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S   + +  +R D YIG
Sbjct: 359 HLRSTLETKNISGLFLAGQINGTTGYEEAAGQGIIAGINAGLRSLGKEPMTLTRADGYIG 418

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFTSR+EYR+S R DNAD RLT +G   G I + R K F++  +
Sbjct: 419 IMIDDLITKGVSEPYRMFTSRSEYRMSARADNADVRLTALGRAAGVISDARWKAFSEEAE 478

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           +   L   L+   +   + +      + D   R+AY+ L  P+ + Q+L  +  +   F 
Sbjct: 479 QMAALTKALQDKKMGWTDWNKHGFKVRNDSTKRSAYDLLRLPNTTPQSLLPLIAEISSFP 538

Query: 530 SLVIERLQIESSYAAYTGRQMI-EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             + +R+ I ++YA Y   Q + +A+ +K E  +L P D DY S+  LS E K  L + +
Sbjct: 539 QHIQDRVHINATYAPYVEYQAVSQARWLKDENLKL-PDDLDYESIFGLSFEEKRALEVAR 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P ++  A ++EG+TP     LL Y++
Sbjct: 598 PESVGMARRVEGVTPTGALRLLQYVR 623


>gi|315659999|ref|ZP_07912857.1| glucose inhibited division protein A [Staphylococcus lugdunensis
           M23590]
 gi|315494900|gb|EFU83237.1| glucose inhibited division protein A [Staphylococcus lugdunensis
           M23590]
          Length = 626

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/623 (45%), Positives = 400/623 (64%), Gaps = 7/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MTQNYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  + +LD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEAHLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N++  +     +      VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDDLIIEDNVVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG +LG I E R  RF +  Q    E + L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDIGYELGMISEARYARFNEKRQQIQDEIDRLTHI 480

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +K    T   + +   S  +DG    A + L  P+ +   +  I  +A +    V E++
Sbjct: 481 RIKPNAHTQSVIEAHGGSQLKDGI--LAIDLLRRPEMTYDTILEILGEAHQLPEAVAEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP++ DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEQKKIPEELDYSKVDSLATEAREKLAKVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +++LL+Y+++  ++
Sbjct: 599 RISGVNPADISILLVYLEQGKLQ 621


>gi|223043387|ref|ZP_03613433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus capitis SK14]
 gi|222443176|gb|EEE49275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus capitis SK14]
          Length = 625

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVVVTTGTFLRGEIILGNMKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DNLRQLGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKSIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQNEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + + + I  K   + +    A + L  P+ +   +  I  +  +    V E+++I++
Sbjct: 483 KPNDHTQSVIESKGGSRLKDGILAIDLLRRPEMTYDTILEILEEDHQLPDAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|222475410|ref|YP_002563827.1| glucose inhibited division protein A (gidA) [Anaplasma marginale
           str. Florida]
 gi|254811505|sp|B9KGL7|MNMG_ANAMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|222419548|gb|ACM49571.1| glucose inhibited division protein A (gidA) [Anaplasma marginale
           str. Florida]
          Length = 637

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/590 (46%), Positives = 373/590 (63%), Gaps = 6/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 38  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 97

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 98  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 157

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 158 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 217

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 218 RSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 277

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R+
Sbjct: 278 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLRS 337

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 338 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 397

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 398 GANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADM 457

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 458 RLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKTA 517

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 518 FELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 577

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 578 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|237749326|ref|ZP_04579806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes OXCC13]
 gi|229380688|gb|EEO30779.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes OXCC13]
          Length = 639

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 401/630 (63%), Gaps = 26/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA V+A++G  T L+TH   T+G +SCNP+IGG+GK HLV+E+DA+
Sbjct: 7   FDVIVVGGGHAGTEAALVSARMGMKTLLVTHNFETLGQLSCNPSIGGIGKSHLVKEVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D AGIQFR+LN  KGPAVR  R Q DR +YR  ++ ++ +Q+NL + Q +V 
Sbjct: 67  GGVMALATDKAGIQFRILNSSKGPAVRATRAQIDRVIYRQIIRYQLENQKNLLLFQQQVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +  Q     R ++VVLT GTF+ G I +G    P GR GD P+ +L +S
Sbjct: 127 DLILEGEKVVGVKTQGGVEFRGTSVVLTAGTFIDGKIFVGLNSYPGGRAGDVPALALSHS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             + +   GRLKTGTP R+DG TI +   +KQ  D   +P FS   +  +   Q+ C IT
Sbjct: 187 LKELNLPQGRLKTGTPPRIDGNTIDFSVMKKQLGDLDPVPVFSLRGNASMHPEQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++N HQIFLEPEG+ T+
Sbjct: 247 HTNTKTHDIIRAGLDKSPLFTGVIEGVGPRYCPSIEDKIHRFSDKNSHQIFLEPEGVKTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+L  E Q   +RTIPGLE  +I+RPGYAIEYD+ +P+ L  +LET++I GL
Sbjct: 307 EYYPNGISTSLSFETQIDLVRTIPGLENAHILRPGYAIEYDFYDPRCLKSSLETRQIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN++    + +     R+++Y+GVM+DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINASLYVQEKEPWVPKRSEAYMGVMVDDLITQGVQEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-------ERRQKRFAKYIQEYNFLRS 476
           YRMFTSRAEYR+SLR DNAD RLT  G KLGC+        E+++++ A+ I+       
Sbjct: 427 YRMFTSRAEYRLSLREDNADIRLTEAGYKLGCVPLEQWIDFEQKREKIAREIER------ 480

Query: 477 LLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDAR 526
            +KS  +    L+S     +  K+  +  +  + +  PD     L S+            
Sbjct: 481 -MKSTWVHPSMLNSEEAERVIGKEIEREYSLADLMKRPDVDYDKLASLTSIEGKNWAAEE 539

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           +    V E+++I+  YA Y  RQ  E +  ++ E   +P+   Y+ + ALS E+++KL  
Sbjct: 540 ELDEKVKEQVEIQIKYAGYIERQTREVRRQQYYENLRLPQSMSYAEVSALSIEVRQKLDK 599

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            KP  L QAS+I G+TPAA++LLLIY+KK 
Sbjct: 600 QKPETLGQASRISGVTPAAISLLLIYLKKQ 629


>gi|294143117|ref|YP_003559095.1| glucose-inhibited division protein A [Shewanella violacea DSS12]
 gi|293329586|dbj|BAJ04317.1| glucose-inhibited division protein A [Shewanella violacea DSS12]
          Length = 630

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 301/620 (48%), Positives = 390/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLKLFQQGVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   ++ +V Q       +TVVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVKNGRVTGVVTQMGLAFEAATVVLTAGTFLSGKIHIGLQNYSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP RLD  TI +D   +Q  D  L   SF+ D K   RQI C +T 
Sbjct: 187 LRELPIRIGRLKTGTPPRLDANTINFDLMAEQKGDTPLPVMSFVGDVKDHPRQISCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II E +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLNT+ 
Sbjct: 247 TNERTHDIIREGLDRSPLYSGVIEGIGPRYCPSIEDKINRFADKTSHQIFVEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +RTI G+E   IIRPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQINLVRTIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +    +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGMNASLQVQGKESWSPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL-- 478
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F++  +    E   LR L   
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWIQFSEKRESIELELQRLRGLWVH 486

Query: 479 -KSLVLTSKNLS-STSISFKQDGKTRTAYEFLSYPDF-SIQNLFSICPDARKFSSLVIER 535
             S +L   N   +T IS +   +       + YP   S++       D R       E+
Sbjct: 487 PNSPLLGVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPGLEDKR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQDEIDKALKHETTGLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++K+
Sbjct: 602 SRISGMTPAAISILLVHLKR 621


>gi|229176159|ref|ZP_04303651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus MM3]
 gi|228607318|gb|EEK64648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus MM3]
          Length = 629

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRS-LLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     K  QE   L S ++K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGREIGLIKEERYERFTNKKLKIEQEKERLSSIIIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|283471925|emb|CAQ51136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 625

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFEIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|229035141|ref|ZP_04189087.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1271]
 gi|228728207|gb|EEL79237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1271]
          Length = 629

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G++T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSNTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|56417042|ref|YP_154116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. St. Maries]
 gi|81170513|sp|Q5PA19|MNMG_ANAMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56388274|gb|AAV86861.1| glucose inhibited division protein A [Anaplasma marginale str. St.
           Maries]
          Length = 637

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/590 (46%), Positives = 373/590 (63%), Gaps = 6/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 38  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 97

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 98  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 157

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 158 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 217

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 218 RSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 277

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R+
Sbjct: 278 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLRS 337

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 338 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 397

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 398 GANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADM 457

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 458 RLTEMGYNAGLVSERRFGVLYNKKQEMDRLVDELHRTSITPHTLSKCGIFISQNGEKKTA 517

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 518 FELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 577

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 578 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|242372606|ref|ZP_04818180.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W1]
 gi|242349661|gb|EES41262.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W1]
          Length = 626

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYRAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DNLRELGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  ++       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRKQIQDEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + + + I  K   + +    A + L  P+ +   +  I  +  +    V E+++I++
Sbjct: 483 KPNDHTQSVIESKGGSRLKDGILAIDLLRRPEMTYDTILEILEEEHRLPEAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|152991329|ref|YP_001357051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitratiruptor sp. SB155-2]
 gi|205375702|sp|A6Q5D5|MNMG_NITSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151423190|dbj|BAF70694.1| glucose inhibited division protein A [Nitratiruptor sp. SB155-2]
          Length = 625

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/614 (46%), Positives = 391/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T +IT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 3   FDVIVIGGGHAGIEAALASARMGMKTLMITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D  GIQFR+LN  KGPAVRG R Q D + YR+ M+  +L+  NL+V Q  V 
Sbjct: 63  GGQMGLTTDKTGIQFRILNASKGPAVRGSRAQIDMDRYRIMMRTIVLNTPNLEVRQEMVD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + +  +     ++     V++TTGTFLRG+IHIG++K  AGR G+  SN+L +S
Sbjct: 123 RLLIKGDAVVGVETNLKNVYHAKKVIVTTGTFLRGLIHIGEIKQEAGRAGEFASNALSDS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
                   GRLKTGT AR+D KTI + + E Q  DE  IPFSF TD+      Q+ C IT
Sbjct: 183 LKSLGLRLGRLKTGTCARIDAKTIDFSRMEVQPGDENPIPFSFRTDRKRFNPTQLPCYIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H IF+EP+ L   
Sbjct: 243 YTNERTHEIIESNFHRAPLFTGQIEGVGPRYCPSIEDKIYRFRDKERHHIFVEPQTLEAT 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG+ST+LP ++Q + IR++ GLE   ++R GYAIEYD+++P +L  TLETK I  L
Sbjct: 303 EYYINGMSTSLPPDVQLEMIRSVKGLEHAEVVRYGYAIEYDFVDPTQLKHTLETKSIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AGIN+A    + + +   R ++YIGV+IDDL +KG  EP
Sbjct: 363 YCAGQINGTTGYEEAAAQGLMAGINAALAIKEQEPLILGRDEAYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RL P G KLG + E    +  +  ++      LLK+  +
Sbjct: 423 YRMFTSRAEFRLLLREDNADLRLMPYGHKLGLVDEETYMKMIRKKEQIEKGLDLLKNSFI 482

Query: 484 TSKNLSSTSISFKQDGKT--RTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    +   +S  ++GK   +TA    ++ P F+++ L  + P+ ++FS    E++ IE+
Sbjct: 483 TPNKETLELLSSLEEGKITDKTALVNVVARPTFTMEKLEVLVPEIQEFSEEAKEQILIEA 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y   Q  + +++       IP+D D  ++  LSNE+KEKL   KP  L  AS+I G
Sbjct: 543 KYHQYIQMQKEQIEKMHELMNVKIPEDLDIDAISGLSNEVKEKLKAHKPPTLFAASQISG 602

Query: 601 MTPAALNLLLIYIK 614
           +TPAA+ +L IYIK
Sbjct: 603 ITPAAIEILHIYIK 616


>gi|167629164|ref|YP_001679663.1| glucose-inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
 gi|205831517|sp|B0TAB5|MNMG_HELMI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167591904|gb|ABZ83652.1| glucose-inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
          Length = 637

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/621 (46%), Positives = 392/621 (63%), Gaps = 13/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  +A+LGA T ++T     +  M CNPAIGG  KGHLVREIDAL
Sbjct: 9   YDVIVIGAGHAGCEAALASARLGAKTLILTISWDNVALMPCNPAIGGPAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M R +  QENLDV Q  V 
Sbjct: 69  GGQMGLTIDKTCIQIRLLNTGKGPAVHALRAQADKKRYQREMIRVLEHQENLDVRQAMVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  +  I     +      +V+TTGT+LRG I IG L  P G  G  PS +L  S
Sbjct: 129 SVVVEQGRVRGIRTNTGAFFAAPALVITTGTYLRGRIIIGDLHYPGGPNGYFPSVALAAS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GR KTGTPAR+DG+T+ + +  +Q  D   + FSF++ +I  +QI C +T T
Sbjct: 189 LRDIGVRLGRFKTGTPARVDGRTVDFSQMVEQPGDREPLNFSFLSPRIERKQISCWLTYT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH+II +N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T  +
Sbjct: 249 TEETHQIIRDNLHRSPLYAGVIEGTGPRYCPSIEDKVVRFADKKSHQVFIEPEGEGTHEM 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +R+I G++ V IIRPGYAIEYDY++P +L  +LE ++I GLF 
Sbjct: 309 YVQGMSTSLPEDVQVTMLRSIIGMKDVKIIRPGYAIEYDYVDPTQLRLSLEHQEIGGLFT 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL+AGIN+AR     + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 369 AGQINGTSGYEEAAAQGLMAGINAARFVKGEEPLVLKRSDAYIGVLIDDLVTKGTNEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ--EYNFLRSLLKSLVL 483
           M TSRAEYR+ LR DNAD RLT IG  +G + +RR +RF + +Q  E   +R   KS  +
Sbjct: 429 MLTSRAEYRLLLRQDNADQRLTEIGRSIGLVDDRRYRRFREKMQLLEQEVVR--WKSSFV 486

Query: 484 TSKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERL 536
           T  N    +I  ++      K  + Y+ L  P+ +  +L  +C D  K       V E++
Sbjct: 487 TPGNKKIQAILDEKKSAPLTKGVSLYDLLRRPELTYDDLIPLCNDGEKDLPIDPEVAEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEI-KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +I + +  Y  +Q  +     K E KRL P D DY  +  LSNE ++KL   KP ++ QA
Sbjct: 547 EISAKFEGYLVKQQAQVDRFNKLENKRL-PADLDYKRVHGLSNEGRQKLIARKPVSIGQA 605

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G++PA +++LL+Y+++ 
Sbjct: 606 SRISGVSPADISILLVYLEQQ 626


>gi|302334325|gb|ADL24518.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 625

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  ++ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRKQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  I  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|88608296|ref|YP_506583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia sennetsu str. Miyayama]
 gi|123491615|sp|Q2GD63|MNMG_NEOSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88600465|gb|ABD45933.1| glucose inhibited division protein A [Neorickettsia sennetsu str.
           Miyayama]
          Length = 627

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/610 (46%), Positives = 397/610 (65%), Gaps = 9/610 (1%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EAAA +A+LG  T L+T+    IG MSCNPAIGG+GKG++V+E+DA+ G
Sbjct: 4   VVVIGGGHAGVEAAAASARLGVETLLVTNNVMNIGEMSCNPAIGGIGKGNVVKEVDAMGG 63

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +M    D A I  R+LN  KG AV GPR QADR+LY+ A+   +   E L +++  +   
Sbjct: 64  VMALAIDRASIHSRMLNRSKGAAVWGPRAQADRKLYKCAVLELLTKYEKLSILEDHITDL 123

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E + +  +V +    I+CS  VLTTGTFL G+I  G  ++  GR G+  S  L N+  
Sbjct: 124 IIENDRLMGVVGEKTGTIKCSAAVLTTGTFLNGIIQTGSERVEGGRFGEKASQCLGNTLR 183

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNL 247
           +  F   RL+TGTPARL   +I +    +Q  D   IPFS+M  +IT  Q+ C IT TN 
Sbjct: 184 RH-FKISRLRTGTPARLYKDSINYSALVEQPGDSPPIPFSYMNTEITVPQVSCYITHTNG 242

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  ++K SAI +G + + GPRYCPSIEDK+VRF E++ HQIFLEPEGL++++VYP
Sbjct: 243 KTHEIIRNSLKFSAIRNG-VSARGPRYCPSIEDKVVRFAEKDSHQIFLEPEGLDSELVYP 301

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIS +LP+EIQ +FIR+I GLEK ++ R  Y IEYDYI+P+EL  TLE+K++  L+ AG
Sbjct: 302 NGISNSLPKEIQEEFIRSIAGLEKASVARYAYTIEYDYIDPRELRSTLESKRVKNLYFAG 361

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL-EPYRM 426
           QINGTTGYEEAA QG+VAG N+A        +  SR++ YIGVMIDDL + G   EPYR+
Sbjct: 362 QINGTTGYEEAAGQGIVAGSNAAGAG-----LIISRSEGYIGVMIDDLITLGTNGEPYRL 416

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR++LR DNAD RLT    ++G + E R   + K    ++  +S L  L  T  
Sbjct: 417 FTSRAEYRLNLRSDNADFRLTEKAYRVGLVDEERYAAYKKKYDTFHNYKSKLNELSTTPY 476

Query: 487 NLSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
            L+    IS  QDG  ++A+  ++ P F  ++L  I P+  +      E L I + Y  Y
Sbjct: 477 ELAKIEGISIAQDGVRKSAWNLITQPLFVFEDLLRIWPELSEVPEKYREMLTINARYEPY 536

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + K ++  EK +IP +FD+ ++ +LS+E+ EKL  ++P  L QA +I G+TPAA
Sbjct: 537 LLRQEQDVKLLRNNEKVVIPSNFDFGAIKSLSSEVIEKLEAVRPETLAQAKRISGVTPAA 596

Query: 606 LNLLLIYIKK 615
           +  +LI++++
Sbjct: 597 IVSILIHLRR 606


>gi|269958543|ref|YP_003328330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Anaplasma centrale str. Israel]
 gi|269848372|gb|ACZ49016.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Anaplasma centrale str. Israel]
          Length = 637

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/590 (46%), Positives = 373/590 (63%), Gaps = 6/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 38  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 97

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 98  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 157

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 158 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 217

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 218 RSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 277

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R+
Sbjct: 278 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLRS 337

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 338 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 397

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 398 GANAALSLSQSHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLLLRSDNADM 457

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 458 RLTEMGYNAGLVSERRFGVLYNKKQEVDRLVEELHRTSITPHTLSKCGIFISQNGEKKTA 517

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 518 FELLGHPSITMDILMQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 577

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 578 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|107024504|ref|YP_622831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia AU 1054]
 gi|116688117|ref|YP_833740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia HI2424]
 gi|123371037|sp|Q1BR97|MNMG_BURCA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222913|sp|A0K2X0|MNMG_BURCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|105894693|gb|ABF77858.1| glucose inhibited division protein A [Burkholderia cenocepacia AU
           1054]
 gi|116646206|gb|ABK06847.1| glucose inhibited division protein A [Burkholderia cenocepacia
           HI2424]
          Length = 656

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRADQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T 
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPVEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|254246686|ref|ZP_04940007.1| Glucose-inhibited division protein [Burkholderia cenocepacia PC184]
 gi|124871462|gb|EAY63178.1| Glucose-inhibited division protein [Burkholderia cenocepacia PC184]
          Length = 656

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRADQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T 
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|186477785|ref|YP_001859255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia phymatum STM815]
 gi|238691317|sp|B2JJL1|MNMG_BURP8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|184194244|gb|ACC72209.1| glucose inhibited division protein A [Burkholderia phymatum STM815]
          Length = 652

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/625 (46%), Positives = 390/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQSVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNAQTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK ISGL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMVGLEHAHILRPGYAIEYDYFDPRGLKASLETKAISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+          C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQSKGPWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----C-PDARKFSSLVI-- 533
             K LSS   T++  K      +  + L  P  S   +  +    C PD       V+  
Sbjct: 487 NPKTLSSEEATALLGKPIDHEYSLADLLRRPGVSYDGICGLREGTCGPDEALAHDDVLLA 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  +  E   +P++ DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGVKYQGYIERQAGEIERNEAHENTRLPENLDYTEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKR 631


>gi|110807565|ref|YP_691085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 5 str. 8401]
 gi|110617113|gb|ABF05780.1| glucose-inhibited division [Shigella flexneri 5 str. 8401]
          Length = 602

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/595 (46%), Positives = 379/595 (63%), Gaps = 5/595 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL GLM +  D AGIQFR+LN  
Sbjct: 1   MGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNAS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR  YR A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IHIG      GR GD PS  L     +     GRLKTGTP R+D 
Sbjct: 121 AKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +TI +    +Q  D  +  FSFM +  +  +Q+ C IT TN +TH +I  N+  S +Y+G
Sbjct: 181 RTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R+
Sbjct: 241 VIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           + G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 MQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+AR S   +    +R+ +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG---KTR 502
           LT IG +LG + + R  RF + ++     R  LKS  +T    ++  ++        +  
Sbjct: 421 LTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREA 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           +  + L  P+ + + L ++ P A   +     E+++I+  Y  Y  RQ  E ++    E 
Sbjct: 481 SGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNEN 540

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK 
Sbjct: 541 TLLPATLDYRQISGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQ 595


>gi|170731465|ref|YP_001763412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia MC0-3]
 gi|205831493|sp|B1K1K2|MNMG_BURCC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169814707|gb|ACA89290.1| glucose inhibited division protein A [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T 
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPAEEATALLGKAIEHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|33594724|ref|NP_882367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella parapertussis 12822]
 gi|81170528|sp|Q7W2I1|MNMG_BORPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33564800|emb|CAE39742.1| glucose inhibited division protein A [Bordetella parapertussis]
          Length = 639

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 298/627 (47%), Positives = 405/627 (64%), Gaps = 17/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR AM+  + +Q NL + Q  
Sbjct: 65  ALGGAMAIATDEAGIQFRILNSSKGPAVRATRVQADRVLYRNAMRARLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NSL 
Sbjct: 125 VDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGLN
Sbjct: 245 ITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK IS
Sbjct: 305 THEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRS- 476
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++      QE   L+S 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLKST 484

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
            +   VL +   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 485 WVNPRVLPAH--AAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|167838437|ref|ZP_02465296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis MSMB43]
          Length = 657

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIHGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--------PDARK--FSS 530
           T K L    +T++  K      +  E L  P  S   +  +         P A      +
Sbjct: 487 TPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGEYGPSEPLAEDGLLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I GMTPAA++LL++++KK
Sbjct: 607 TIGQASRISGMTPAAISLLMVHLKK 631


>gi|188989799|ref|YP_001901809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. B100]
 gi|205831571|sp|B0RMP9|MNMG_XANCB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167731559|emb|CAP49734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Xanthomonas campestris pv. campestris]
          Length = 634

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/630 (46%), Positives = 394/630 (62%), Gaps = 30/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 68  GGAMAKAADLAGIQWRTLNASKGPAVRATRCQADRNLYRSAIRRIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q       + VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGAAEGDSVRGVITQTGLRFEATAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---TDKITNRQ 237
           +L     +  F   RLKTGTP R+DG+T+ +   ++Q  D+ L   SFM   +D  T  Q
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYTMMDEQPGDDPLPVMSFMGQVSDHPT--Q 245

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EP
Sbjct: 246 VSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGPRYCPSIEDKVVRFADKTSHQIFVEP 305

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LET
Sbjct: 306 EGLDVTEIYPNGISTSLPFDVQLALVRSIRGFAQAHITRPGYAIEYDFFDPRGLKASLET 365

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL +
Sbjct: 366 KAVGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQALPAWSPRRDEAYLGVLVDDLIT 425

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + 
Sbjct: 426 HGTTEPYRMFTSRAEYRLQLREDNADLRLTGVGRAMGLVDDARWARFSSKQEAVQRETAR 485

Query: 478 LKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDA 525
           L +L  T  N      + +  +   ++       + +  P+ S   L  +        DA
Sbjct: 486 LSALWATPGNALGREVVDTLGVPMSRETNV---LDLIKRPELSYAALMRVPTLGPGVDDA 542

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     V E+++I   YA Y  RQ  E    +  E   IP+ FDY+ +  LS E+++KL 
Sbjct: 543 Q-----VAEQVEIGVKYAGYLDRQRDEIARQQRHETTPIPEGFDYAGVRGLSMEVQQKLE 597

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P ++ QA +I GMTPAA++LLL+++++
Sbjct: 598 RVRPQSIGQAQRIPGMTPAAISLLLVHLER 627


>gi|323697939|ref|ZP_08109851.1| glucose inhibited division protein A [Desulfovibrio sp. ND132]
 gi|323457871|gb|EGB13736.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           ND132]
          Length = 627

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/619 (45%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +D+IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+E
Sbjct: 7   IPAEFDLIVVGAGHAGCEAAMASARLGLKTLLLTINVDRIGHLSCNPAIGGLAKGHMVKE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG  ADAAGIQFR+LN +KGPAVR  R Q DR  Y   +QR + SQENL V Q
Sbjct: 67  IDALGGMMGLWADAAGIQFRILNTRKGPAVRSSRAQIDRAEYMRVVQRSVFSQENLWVFQ 126

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              A   TE   +S +  +   +     V+LTTGTFLRG++HIG      GRMGD  +NS
Sbjct: 127 DMGAAVLTENGAVSGLRTELGEVFPARAVLLTTGTFLRGLMHIGLEHFSGGRMGDPAANS 186

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  FD GRLKTGT  RL   +I +   ++Q  D+   PFSF    +   Q+ C 
Sbjct: 187 LSASLRELGFDLGRLKTGTTPRLLRDSIDFSAMQEQPGDDPPTPFSFRNRTVPLPQVSCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN   H  I      S +++G I+  G RYCPSIEDK+ RF E++ HQIF+EPEGL+
Sbjct: 247 LTYTNERAHEAIRSGFDRSPMFTGIIEGTGARYCPSIEDKVARFPEKDRHQIFVEPEGLH 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  +YP+GI T+LP ++Q + IR I GLE   I+RPGYAIEYD++ P +L PTLETK + 
Sbjct: 307 SPEMYPSGIPTSLPFDVQKKMIRAIRGLENAQIVRPGYAIEYDFVPPTQLRPTLETKAVP 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAAAQGL A +N+A K    +    SR  +Y+ V++DDL +KG  
Sbjct: 367 GLYCAGQINGTSGYEEAAAQGLWAALNAACKLLGREPFLLSRDQAYMAVLVDDLVTKGTE 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR  NAD RLTP+G  LG + + + + F    ++   +   + S+
Sbjct: 427 EPYRMFTSRAEHRLLLREGNADERLTPVGRDLGLVDDDQWRLFTAKQEKLQAVLEAMHSI 486

Query: 482 VL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +     T + L S   S    GK       L  P   I  L   CP+       V+   
Sbjct: 487 RIRPDAATRETLESIGASVP--GKAVELASLLRQPQMDIDRLAVFCPELAGLDREVLCEA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +++  Y  Y  +Q     + K  E +++P+D DY S+  L+ E+ EKLS ++P  L QA 
Sbjct: 545 EVQVRYEGYLVKQEELVAKFKSLEDKVLPEDLDYGSVSGLTREVVEKLSRIQPRTLGQAG 604

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAAL  L I++KK
Sbjct: 605 RISGVTPAALACLEIHLKK 623


>gi|302340303|ref|YP_003805509.1| glucose inhibited division protein A [Spirochaeta smaragdinae DSM
           11293]
 gi|301637488|gb|ADK82915.1| glucose inhibited division protein A [Spirochaeta smaragdinae DSM
           11293]
          Length = 619

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 275/618 (44%), Positives = 391/618 (63%), Gaps = 9/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YD +VIGGGHAG EAA   A+L   T LIT     IG +SCNPA+GGL KG++VRE+D
Sbjct: 3   RDYDAVVIGGGHAGIEAALALARLSHRTLLITQSLDAIGRLSCNPAVGGLSKGNIVREVD 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG + DA  IQFR+LN ++GPAV+ PR QAD+  Y L  +  +  Q  LD+ Q  
Sbjct: 63  ALGGEMGHLIDATMIQFRILNQRRGPAVQAPRAQADKFAYNLLAKETLEKQPGLDLYQDT 122

Query: 124 VAGFNTEKNI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           V     E +I      I  +       I   +VVLTTGTF+ G + IG  +  +GR+G+ 
Sbjct: 123 VTDLVIEGDIALGGARIVGVRTDRGQEISTRSVVLTTGTFMEGKVFIGSWEASSGRLGEP 182

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            +  L ++     F  GR+KTGTPAR+   ++ +DK E+Q  DE ++PFSF  D I   +
Sbjct: 183 AAIGLGSALRAKGFHLGRMKTGTPARVAASSLDYDKMEEQKGDELMLPFSFSHDTIDRPE 242

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C IT TN +TH +I EN+  S +Y G I   GPRYCPSIEDK+VRF +R  HQIF+EP
Sbjct: 243 RSCWITYTNEKTHSLISENLGTSPLYGGKIVGKGPRYCPSIEDKVVRFPDRQRHQIFVEP 302

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T+ +Y NGIS++LPE +Q QFI ++PGLE+  I+RPGYA+EYDYI+P++LFP+L+T
Sbjct: 303 EGLHTEEMYLNGISSSLPEWVQEQFIHSVPGLERAVIMRPGYAVEYDYIDPRQLFPSLQT 362

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ++GLF+AGQ NGT+GYEEAA QGL+AGIN++      D +  SR ++Y GV+IDDL +
Sbjct: 363 KAVAGLFIAGQTNGTSGYEEAACQGLLAGINASLLMRGEDLLVLSRAEAYAGVLIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR++LR D AD RL P+G ++G   +   +   K ++    ++ L
Sbjct: 423 LGTEEPYRMFTSRAEYRLNLRHDTADRRLLPLGHRIGLQNDDAMEALNKRLEGEAAIKEL 482

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L S  L S   +   +S  Q+GK     + L  P+ SI  L  + P+   F    + R  
Sbjct: 483 LASRRLRSSEAAGLDLS-GQEGK--KFLDLLKVPEVSIDMLVPLQPELEAFPDKWLRRAA 539

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           ++  Y  Y  RQ  +    +  E   IP DF+++++  +SNE +EKL  ++P ++ QAS+
Sbjct: 540 LDIRYEGYIRRQDEQVDRFQRMEGLKIPADFNWNTIEGISNESREKLKQIRPLSVGQASR 599

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+  + + +L++ +++
Sbjct: 600 ISGVRSSDIAVLMVMLRR 617


>gi|229065142|ref|ZP_04200435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH603]
 gi|228716171|gb|EEL67890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH603]
          Length = 629

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 393/618 (63%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L   
Sbjct: 128 RLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 STETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+ 
Sbjct: 308 YVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRSL-LKS 480
           + TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +  QE   L S+ +K 
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIKP 487

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I++
Sbjct: 488 RPEVQELIRSIGGSELKDGI--RASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQT 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LLIYI++  +
Sbjct: 606 VNPADVSILLIYIEQGKI 623


>gi|160895496|ref|YP_001561078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Delftia acidovorans SPH-1]
 gi|238687175|sp|A9BQJ1|MNMG_DELAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160361080|gb|ABX32693.1| glucose inhibited division protein A [Delftia acidovorans SPH-1]
          Length = 659

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/639 (45%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDIGGIQFRILNSSKGPAVRATRAQADRILYKAAIRDMLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGVRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTDKITN 235
           +   +     GRLKTGTP RLDG++I + + E+Q  D       E ++P FSF+ +   +
Sbjct: 185 SRLKELQLPQGRLKTGTPPRLDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFIGNAAMH 244

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  HQIF
Sbjct: 245 PRQMPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESHQIF 304

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL T+  YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L  +
Sbjct: 305 LEPEGLTTNEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSLKSS 364

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +    +     R ++Y+GV++DD
Sbjct: 365 FETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGQEAWLPRRDEAYLGVLVDD 424

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G  +G + + R   F++     +  
Sbjct: 425 LITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRAMGLVDDARWDAFSRKRDAVSRE 484

Query: 475 RSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS----------I 521
              LKS  +  + ++   S  +  K   +    ++ L  PD     L S          +
Sbjct: 485 TERLKSTWVNPRIVTPEESERVLGKSIEREYNLFDLLRRPDVGYGKLMSLNEGRYASADV 544

Query: 522 CPDA-RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
            PD     S+ V+E+++I + YA Y  RQ  E +     E   +P + DY  +PALS E+
Sbjct: 545 QPDVLGDLSASVVEQVEIAAKYAGYIDRQKDEVQRAAHFENLRLPAELDYMQVPALSFEV 604

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++ L   +P  L QAS++ G+TPAA++LL++++KK   +
Sbjct: 605 RQSLQKHRPETLGQASRMSGVTPAAISLLMVHLKKGGFR 643


>gi|70727674|ref|YP_254590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus haemolyticus JCSC1435]
 gi|81170579|sp|Q4L2Z3|MNMG_STAHJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68448400|dbj|BAE05984.1| glucose inhibited division protein A [Staphylococcus haemolyticus
           JCSC1435]
          Length = 625

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++QG 
Sbjct: 63  ALGGQMAKAIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYRAQAVVITTGTFLRGEIILGNMKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNDRTHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQDEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                + + I  + +G +R      A + L  P+ +   +  I  ++ +    V E+++I
Sbjct: 483 KPNEHTQSVI--EANGGSRLKDGILAIDLLRRPEMTYNTILEILEESHQLPEAVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLAEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LL+Y+++  ++
Sbjct: 601 SGVNPADISILLVYLEQGKLQ 621


>gi|83719253|ref|YP_443812.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Burkholderia thailandensis E264]
 gi|167620986|ref|ZP_02389617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis Bt4]
 gi|123536041|sp|Q2STD7|MNMG_BURTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83653078|gb|ABC37141.1| glucose-inhibited division protein A [Burkholderia thailandensis
           E264]
          Length = 657

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 390/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRYLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   +P FSF+     +  Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPVPVFSFLGRPEQHPEQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRHALEKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T +  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATELLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDALLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++KK
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKK 631


>gi|239828706|ref|YP_002951330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus sp. WCH70]
 gi|239808999|gb|ACS26064.1| glucose inhibited division protein A [Geobacillus sp. WCH70]
          Length = 629

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALAAARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V Q  +     TVV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVVTQTGAHYYAKTVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTPETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRQLLTTIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIIAGINAAHRAFGKEEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    +     +  LKS ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYKIGLISEERYQKFLAKKEAIEREKKRLKSYII- 485

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K         +Q G +       A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 486 -KPTKEVQDVIRQAGGSELKDGIRAADLLRRPEMTYEHIKQLAPAEEEISPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQQVERLKKMENKKIPEDIDYDAIHGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|326386156|ref|ZP_08207780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209381|gb|EGD60174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 614

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/615 (45%), Positives = 397/615 (64%), Gaps = 2/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAAAVAA++GA  AL++   + IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   QQFDVIVVGGGHAGVEAAAVAARMGARIALVSFDPAMIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG+M R ADA  I +R+LN  KG AV+GPR QADR  +R A+Q  I +Q+ L VI GE
Sbjct: 62  AFDGIMARAADAGAIHYRMLNRSKGSAVQGPRIQADRRRFRAAVQAAIAAQDGLTVIGGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E    + + + + + +  S VVL TGTFL G ++ G+ ++  GR+G++ ++ L 
Sbjct: 122 VVALQMEGGRAAGVELANGTCLGASAVVLCTGTFLGGRLYRGEERMEGGRIGEAAAHRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                      RLKTGTP RLDG+TI W +  +Q +D      S +       Q+ CGI 
Sbjct: 182 QQLRDAALPMARLKTGTPPRLDGRTIDWGRLPEQPSDPEPWTMSPLGKGRVLPQVFCGIA 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH II   +  S +++G I++ GPRYCPSIEDKI RFG+R+GHQIFLEPEGL+  
Sbjct: 242 RTNQRTHEIIRGGLDRSPLFTGAIEAQGPRYCPSIEDKIHRFGDRDGHQIFLEPEGLDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q   +R++ GLE+V +  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 TVYPNGVSTSLPTDVQIAMMRSVEGLEQVEVTVPGYAVEYDHIDPRALRSSLEVKAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAAAQGLVAG+++A +    +     R +SY+ VMIDDLT  GV EP
Sbjct: 362 FFAGQLNGTTGYEEAAAQGLVAGLHAAGQVLGREIPLLDRANSYMAVMIDDLTLHGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA +RLTP+ +  GC+G  R++ FA+   E   +   L     
Sbjct: 422 YRMLTARAEYRLRLRANNAGSRLTPLALAAGCVGPERREWFARREAERARIDEALTQTA- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   ++ + DG  R+  E+L +P+ ++  L     +      L+ E ++ +++YA
Sbjct: 481 TPNELTQAGMAVRADGARRSLGEWLRFPEVTLAGLSPWLGEG-AIDPLLAEEMEEDAAYA 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E ++++  E   +  DF ++ +P LS E+ E+L+  +P  L  A ++ G+TP
Sbjct: 540 PYLARQEAELRDLRASELVALGDDFPFADVPGLSREMVERLAQARPETLAAAGRVPGITP 599

Query: 604 AALNLLLIYIKKNTV 618
           AAL  LL++ ++   
Sbjct: 600 AALASLLVHARRRAA 614


>gi|73663752|ref|YP_302533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|123641434|sp|Q49UI5|MNMG_STAS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72496267|dbj|BAE19588.1| glucose inhibited division protein A [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 625

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 397/626 (63%), Gaps = 17/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  + NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKKVIEDEANLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E ++I  +     +      V++TTGTFLRG I +G +K  +G     PS SL 
Sbjct: 123 VDDLIIEDDVIKGVRTNIGTEYWSEAVIITTGTFLRGEIILGNMKYSSGPNHQLPSISLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++     F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRGLGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETKKI  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKKIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A +    D +  SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAARVQGKDEVILSRSDAYIGVLIDDLITKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF       N  R+++K+   
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDLGYELGMISEERYARF-------NEKRAMIKAEQE 475

Query: 482 ----VLTSKNLSSTSISFKQDGKTRT----AYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
               +    N     I   Q G        A E L  P+ +   +  I  ++ +  S V 
Sbjct: 476 RLNGIRVKPNDRVQEIIEAQGGSRLKDGILALELLRRPEMTYDLILEILDESHQLPSDVE 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ 
Sbjct: 536 EQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLAEVKPLNIA 595

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+ PA +++LL+Y+++  ++
Sbjct: 596 QASRISGVNPADISILLVYLEQGKIQ 621


>gi|42784679|ref|NP_981926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus ATCC 10987]
 gi|206975823|ref|ZP_03236734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus H3081.97]
 gi|217962975|ref|YP_002341553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH187]
 gi|222098960|ref|YP_002533018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Bacillus cereus Q1]
 gi|229142232|ref|ZP_04270756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST26]
 gi|229199693|ref|ZP_04326336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1293]
 gi|81170515|sp|Q72WU4|MNMG_BACC1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42740611|gb|AAS44534.1| glucose-inhibited division protein A [Bacillus cereus ATCC 10987]
 gi|206745917|gb|EDZ57313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus H3081.97]
 gi|217067770|gb|ACJ82020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH187]
 gi|221243019|gb|ACM15729.1| glucose-inhibited division protein A [Bacillus cereus Q1]
 gi|228583788|gb|EEK41963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1293]
 gi|228641250|gb|EEK97557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST26]
          Length = 629

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|51244704|ref|YP_064588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfotalea psychrophila LSv54]
 gi|81170536|sp|Q6APZ2|MNMG_DESPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50875741|emb|CAG35581.1| probable glucose inhibited division protein A [Desulfotalea
           psychrophila LSv54]
          Length = 647

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 303/642 (47%), Positives = 399/642 (62%), Gaps = 37/642 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++VIG GHAGCEAA  AA+LG  T L      TIG+MSCNPAIGGL KGHLVREIDAL
Sbjct: 16  FDIVVIGAGHAGCEAALAAARLGHKTLLAVMNVDTIGAMSCNPAIGGLAKGHLVREIDAL 75

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M RV DA  IQFR LN  KGPAV+  R QADR LYRL M+  I  QENL V Q EV 
Sbjct: 76  GGEMARVIDATSIQFRRLNTSKGPAVQSSRAQADRLLYRLQMKSVIEHQENLTVSQTEVN 135

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           GF  E   I+ +    +  I     ++ TGTFL G++HIG    PAGR+GD PS  L + 
Sbjct: 136 GFIVEDGKITGVTTTIDEKISVKAAIVATGTFLNGLVHIGLKNFPAGRLGDGPSTGLADW 195

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
           F    F  GR+KTGT  R+D  TI + + E Q +D     FSF +     T  Q+ C IT
Sbjct: 196 FYDNGFAVGRMKTGTVPRIDSLTIDYSELEAQESDMPPAHFSFDSQGKGYTLPQLPCYIT 255

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II + I  S +Y+G I+  G RYCPSIEDKI+RF E++ HQ+FLEPEGL+T 
Sbjct: 256 YTNEKTHEIIRKGIDQSPLYAGIIQGIGARYCPSIEDKIMRFPEKDRHQVFLEPEGLDTV 315

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ T+LP E+Q + +++I GLE   IIRPGYAIEYDYI+P  L P+L TKKI  L
Sbjct: 316 EVYPNGLPTSLPLEVQIEMLQSIKGLENARIIRPGYAIEYDYIDPLGLRPSLATKKIENL 375

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQGL+AGIN+ R   + + +   R+ +YIGV+IDDL + G  EP
Sbjct: 376 YLAGQINGTSGYEEAAAQGLMAGINATRYLEEREPLILDRSQAYIGVLIDDLVTCGTKEP 435

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD+RL  IG  +G + E + +R+            L+K   +
Sbjct: 436 YRLFTSRAEYRLLLREDNADSRLCQIGKDIGLLDEDKHQRY------------LIKQAAI 483

Query: 484 TSKNLSSTSISFK--------------QDGKTRTAY-EFLSYPDFSI---QNLFSICPDA 525
            +   +  +IS K               D K ++A    L  P+ +I   Q L     D 
Sbjct: 484 DAGCATLDAISIKPTAEVNRILNDAASADLKQKSALSSLLRRPEINITFLQKLPLTAGDK 543

Query: 526 RKF----SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                  +S V + +Q+   +  Y  RQ  + +  K  E   +P+D +Y+ L  LSNE+ 
Sbjct: 544 EAVIALANSAVCQEVQVRIKFKGYLQRQEEQVQRFKRMETLKLPEDLNYAQLSGLSNEVV 603

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK-NTVKLNE 622
           EKLS ++P +L QAS+I G+TPAA+++L ++++K N +K N+
Sbjct: 604 EKLSTIRPISLGQASRISGITPAAVSVLQVHLRKLNYLKSND 645


>gi|293367585|ref|ZP_06614238.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318298|gb|EFE58691.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736135|gb|EGG72408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU045]
          Length = 625

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/619 (44%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILNQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDVRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +   I  K   + +    A + L  P+ + + +  I  ++ +    V E+++I++
Sbjct: 483 KPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|115350140|ref|YP_771979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ambifaria AMMD]
 gi|122324420|sp|Q0BJM8|MNMG_BURCM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115280128|gb|ABI85645.1| glucose inhibited division protein A [Burkholderia ambifaria AMMD]
          Length = 656

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   + S+    C      +       
Sbjct: 487 TPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGECAPTEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|206558428|ref|YP_002229188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia J2315]
 gi|238693058|sp|B4E581|MNMG_BURCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|198034465|emb|CAR50330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia J2315]
          Length = 656

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKEAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLTDDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|196036098|ref|ZP_03103498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus W]
 gi|218906675|ref|YP_002454509.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH820]
 gi|195991265|gb|EDX55233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus W]
 gi|218539382|gb|ACK91780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH820]
          Length = 629

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 394/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    ++ L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKARLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|329735765|gb|EGG72046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU028]
          Length = 625

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/619 (44%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIDRAFSFETTEFILNQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDVRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +   I  K   + +    A + L  P+ + + +  I  ++ +    V E+++I++
Sbjct: 483 KPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|150019906|ref|YP_001312160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium beijerinckii NCIMB 8052]
 gi|205831523|sp|A6M3M4|MNMG_CLOB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149906371|gb|ABR37204.1| glucose inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
          Length = 626

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/612 (45%), Positives = 398/612 (65%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++V+G GHAGCEAA  +A+LG +T + T    +I  M CNP IGG  KGHLVREIDAL
Sbjct: 10  FDIVVVGAGHAGCEAALASARLGLNTLVCTINLDSIALMPCNPNIGGTAKGHLVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV 
Sbjct: 70  GGEMGINIDNTFIQSRMLNTSKGPAVHSLRAQADKKSYQFRMKRILEEQENLKIRQIEVT 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             N E   ++ +V ++ ++ +C  V+L TGT+L+G I IG++    G  G  P+N L  S
Sbjct: 130 ELNVENGKVTGVVTKNGAIFKCKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ +++ + K  +Q  D+ +IPFSFM++ I   Q+ C +T T
Sbjct: 190 LLDLGVSLRRFKTGTPARINRRSVDFSKMIEQNGDDNIIPFSFMSENIEREQVSCYLTYT 249

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ET +II +NI  S IY+G IK  GPRYCPSIEDKI+RF ++  HQIF+EPEGL+T  +
Sbjct: 250 NDETRKIIRDNIGRSPIYNGSIKGVGPRYCPSIEDKIMRFPDKPQHQIFIEPEGLDTLEM 309

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S++LPEE+Q + ++T+PGLE V ++R  YAIEYD I+P +L PTLE K I GL+ 
Sbjct: 310 YVGGFSSSLPEEVQIKMLKTLPGLENVEMMRTAYAIEYDSIDPTQLKPTLEFKDIEGLYG 369

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA AQGL+AGIN+A K  + + +  +R+D+YIGV+IDDL +KG  EPYR
Sbjct: 370 AGQLNGSSGYEEAGAQGLIAGINAALKIKEKEPLILTRSDAYIGVLIDDLVTKGTNEPYR 429

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G ++G + E R  +F K  Q        LK+L +T+
Sbjct: 430 MMTSRAEYRLLLRQDNADFRLTNLGYRVGLVTEERYDKFIKRKQNIENELERLKNLKVTN 489

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           K   N    S++  +  K  T YE L  P+    +L  I  +  +    V E++ I + Y
Sbjct: 490 KKEINEFLISLNSAELRKPITFYELLQRPELDYFDLKQIDSERPELPHDVGEQINILTKY 549

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q+ +  + K  EK+L+PKD +YS +  L  E  +KLS ++P ++ QA++I G++
Sbjct: 550 EGYIQSQLEQVAQFKKFEKKLLPKDINYSDIKGLRTEAIQKLSDIRPISIGQATRISGVS 609

Query: 603 PAALNLLLIYIK 614
           PA +++LLIY++
Sbjct: 610 PADISVLLIYLE 621


>gi|196041933|ref|ZP_03109220.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus NVH0597-99]
 gi|196027188|gb|EDX65808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus NVH0597-99]
          Length = 629

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|153002872|ref|YP_001368553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS185]
 gi|166200612|sp|A6WUK1|MNMG_SHEB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151367490|gb|ABS10490.1| glucose inhibited division protein A [Shewanella baltica OS185]
          Length = 629

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 383/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAEFSEKLESIELELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I             E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|311032249|ref|ZP_07710339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus sp. m3-13]
          Length = 629

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/618 (44%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA   AA+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGVEAGLAAARQGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I ++EN+ ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIENEENITLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  ++    TVV+TTGTFLRG I +G+L+  +G     PS +L  
Sbjct: 127 EKLIVEDGVCKGVITQTGAIYESKTVVITTGTFLRGKIILGELQYLSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSASIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSAETHQLIDDNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETK+I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRKILSTIPGLENVRMMRAGYAIEYDAIVPTQLWPTLETKRIQNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ R++   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRRALGEEDLILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG K+G I   R  +F +  QE    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHKIGLISPERFAKFEEKKQEIEAEKERLQSIII- 485

Query: 485 SKNLSSTSISFKQDGKTRT----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             N+   +I  +  G        A + L  P+ +  ++  + P  ++ S  V E+++I+ 
Sbjct: 486 KPNVQVQTIIREAGGSELKDGIRAADLLKRPEMTYNHIHQMVPADKEISPDVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + +   +K  E + IP++ DY  +  L+NE ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIQKSLQQVDRLKKMENKKIPENIDYDDIHGLANEARQKLKEVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADVSILLVYLEQGRI 623


>gi|27469334|ref|NP_765971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis ATCC 12228]
 gi|57865943|ref|YP_187604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis RP62A]
 gi|282874717|ref|ZP_06283596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis SK135]
 gi|38257565|sp|Q8CMN6|MNMG_STAES RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71152074|sp|Q5HS35|MNMG_STAEQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27316884|gb|AAO06059.1|AE016752_92 glucose inhibited division protein A [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636601|gb|AAW53389.1| glucose inhibited division protein A [Staphylococcus epidermidis
           RP62A]
 gi|281296433|gb|EFA88948.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis SK135]
 gi|319399918|gb|EFV88164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis FRI909]
 gi|329724153|gb|EGG60671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU144]
          Length = 625

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/619 (44%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDVRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +   I  K   + +    A + L  P+ + + +  I  ++ +    V E+++I++
Sbjct: 483 KPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|304412698|ref|ZP_07394301.1| glucose inhibited division protein A [Shewanella baltica OS183]
 gi|307305837|ref|ZP_07585583.1| glucose inhibited division protein A [Shewanella baltica BA175]
 gi|304348908|gb|EFM13323.1| glucose inhibited division protein A [Shewanella baltica OS183]
 gi|306911330|gb|EFN41756.1| glucose inhibited division protein A [Shewanella baltica BA175]
          Length = 629

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 383/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDTRWAAFSEKLESIELELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I             E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|253987528|ref|YP_003038884.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253778978|emb|CAQ82138.1| trna uridine 5-carboxymethylaminomethyl modification enzyme gid
           (glucose-inhibited division protein a) [Photorhabdus
           asymbiotica]
          Length = 629

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/618 (46%), Positives = 395/618 (63%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +++   V +     R   VVLT GTFL G IHIG      GR GD P+ SL  
Sbjct: 126 EDLIVENDMVIGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D     FSF+ +   + +Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLTQQLGDTPTPVFSFLGNAGQHPQQMPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR + + +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAARYATEEEGWFPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++     R  L+++ +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRKLGLVDDSRWEHYCRKVEMIEQERQRLRNIWI 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQ 537
              S NL   +   K    K     + L  P+ + + L S+    P  ++  +   ++++
Sbjct: 486 HPHSNNLIDINDILKTPLSKEANGEDLLRRPEMNYELLTSLPLFSPGLKEPQT--ADQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+
Sbjct: 544 IQVKYEGYIARQQEEIEKQLRNENTSLPIDLDYCQISGLSNEVVAKLNDHKPSSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+++LL+++KK
Sbjct: 604 ISGITPAAISILLVWLKK 621


>gi|167626210|ref|YP_001676504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella halifaxensis HAW-EB4]
 gi|189039357|sp|B0TQG5|MNMG_SHEHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167356232|gb|ABZ78845.1| glucose inhibited division protein A [Shewanella halifaxensis
           HAW-EB4]
          Length = 629

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 380/620 (61%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q  V 
Sbjct: 67  GGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQTNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +V Q         VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLVVENNKVIGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI +    +Q  D  L   SF+ D   +  Q+ C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSLMTEQKGDNPLPVMSFIGDVNDHPEQVSCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLNT  
Sbjct: 247 TNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKINRFADKTSHQIFIEPEGLNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK ISGLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWAPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + ++R   F++ ++     L+ L    + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDKRWALFSEKMESIETELQRLRGQWIH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSI------CPDARKFSSLVIER 535
            +  L            TR A   + L  P+     L SI        D R       E+
Sbjct: 487 PNSPLVEALNPNLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPGLEDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  K++  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++KK
Sbjct: 602 SRISGMTPAAISILLVHLKK 621


>gi|163859298|ref|YP_001633596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella petrii DSM 12804]
 gi|205831490|sp|A9IJ48|MNMG_BORPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163263026|emb|CAP45329.1| glucose-inhibited division protein A [Bordetella petrii]
          Length = 639

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/625 (47%), Positives = 396/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARIGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q  L + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRSRLENQPGLWIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQIGLKFRGRTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPATSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
               +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+ +   + RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRTIDYSVLEEQPGDLDPVPVFSFLGNAAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 THEVYPNGVSTSLPFDVQWDLIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG N+A ++   D     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGANAALQALDRDTWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R   F++           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVDDARWDAFSRKRDAVAAEVERLKST 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--------ICPDARKFSS 530
            +  +N    ++  +  K   +  +  + L  P  S   L          +         
Sbjct: 485 WVNPRNFPAETAEPLLGKAIEREYSLSDLLKRPAVSYAALMRARNADGSLLAGPGVTDDD 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 ILAEQVEIQVKYAGYIARQQDEVQKHLAHEQQRIPADIDYDAVSSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TIGQAARISGVTPAAISLLLIHLKR 629


>gi|52145291|ref|YP_086748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus E33L]
 gi|196045512|ref|ZP_03112743.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB108]
 gi|229094594|ref|ZP_04225661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-42]
 gi|81824093|sp|Q630B9|MNMG_BACCZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51978760|gb|AAU20310.1| glucose-inhibited division protein A [Bacillus cereus E33L]
 gi|196023719|gb|EDX62395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB108]
 gi|228688841|gb|EEL42672.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-42]
          Length = 629

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|330812746|ref|YP_004357208.1| glucose inhibited division protein A [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380854|gb|AEA72204.1| putative glucose inhibited division protein A [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 632

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/616 (47%), Positives = 388/616 (62%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAVREILENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNFSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DGK++ +    +Q  D  +   SFM +K  + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGKSVDFSVMTEQPGDTPIPVMSFMGNKEQHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TN  TH II  N+  S +YS  G+I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T
Sbjct: 247 TNARTHEIIAANLDRSPMYSAAGEIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLTT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I G
Sbjct: 307 HELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKAIGG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N+A  +   +  C  R ++YIGV++DDL + G  E
Sbjct: 367 LFFAGQINGTTGYEEAGAQGLLAGANAALLAKGKEAWCPRRDEAYIGVLVDDLITLGTQE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  
Sbjct: 427 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESIELEEQRLKSTW 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +        +I+ K        Y     LS P+     L  +     +    V E+++I+
Sbjct: 487 VRPGTEQGDAIAAKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEIK 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL   +P  L QAS+I 
Sbjct: 546 TKYAGYIDRQQDEIARLRASEDTKLPVDIDYTGISGLSKEIQSKLGATRPETLGQASRIP 605

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++LL+I++KK
Sbjct: 606 GVTPAAISLLMIHLKK 621


>gi|237823657|pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 gi|237823658|pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 gi|237823659|pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823660|pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823661|pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823662|pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
          Length = 637

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/625 (47%), Positives = 392/625 (62%), Gaps = 30/625 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EAA  AA++GA TA+      TIG MSCNPAIGG+ KG +VREIDA
Sbjct: 27  EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDA 86

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D  GIQF++LN +KG AV+ PR QAD++ YR  M++   +QENL + Q EV
Sbjct: 87  LGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEV 146

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +        +   VV+TTGTFL GVI+IG   IP GR+G+  S  L +
Sbjct: 147 VDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSD 206

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-------RQ 237
            + +FDF   R KTGTPARLD +TI +   E    D+    FSF T+ + +        Q
Sbjct: 207 FYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQ 266

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDKIV+F ++  HQIFLEP
Sbjct: 267 VNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T  +YPNG+ST+LPEE+Q +  R+IPGLE V +IRP YAIEYD + P EL+PTLET
Sbjct: 327 EGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMIDDLT+
Sbjct: 387 KKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTT 446

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSR+EYR+ +R DNA  RL  +G +LG + E          ++Y  ++ L
Sbjct: 447 KGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSE----------EQYKLVKEL 496

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS------S 530
            + +    +   S  +S    G TR      SY   ++  +     D + KF        
Sbjct: 497 EREIEKWKEFYKSERVSVAVGGDTR------SYSVATLMTMNYTLDDVKEKFGYEVPQHP 550

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E ++I+  Y  Y  R+    +++K  E   IP D DY  +P L+ E +EKL   KP 
Sbjct: 551 YVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPI 610

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I+G+TPAA+  LL+Y+ K
Sbjct: 611 TVGQASRIDGITPAAITALLVYLGK 635


>gi|170699462|ref|ZP_02890505.1| glucose inhibited division protein A [Burkholderia ambifaria
           IOP40-10]
 gi|170135611|gb|EDT03896.1| glucose inhibited division protein A [Burkholderia ambifaria
           IOP40-10]
          Length = 656

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076852|gb|ADJ66251.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae
           SmR1]
          Length = 642

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/626 (46%), Positives = 394/626 (62%), Gaps = 12/626 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA+
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q         VVLT GTFL G IH+G      GR GD P+ SL   
Sbjct: 127 DLMLEGDRVVGAVTQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I     E+Q  D   +P FS M +   + RQ+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSINLAILEEQPGDLDPVPVFSVMGNAAMHPRQMPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQI+LEPEGL T 
Sbjct: 247 HTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEPEGLTTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ G+E  +I+RPGYAIEYDY +P+ L  +LET+++ GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLETRQVQGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+A ++   +     R ++Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVTQGVQEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ + + F +  +  +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMERLKSTWV 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             + L++     +  K   +     + L  P+ S  +L  +     +           V 
Sbjct: 487 NPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGTEGQALAGPGIEDGPVR 546

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  RQ  E       E   +P D DY  + ALS E+++KL+  +P  L 
Sbjct: 547 EQVEIQVKYAGYIARQADEISRQDHNENLKLPADLDYMDVKALSIEVRQKLNKHRPETLG 606

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+TPAAL+LLL+++KK  +K
Sbjct: 607 QASRISGVTPAALSLLLVHLKKGGLK 632


>gi|262392793|ref|YP_003284647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. Ex25]
 gi|262336387|gb|ACY50182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. Ex25]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/625 (45%), Positives = 388/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R  RF + +      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDNVRWARFNEKLNNMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           S  +  K+        L  T ++ +  G+       ++Y   +    F+   + ++ +  
Sbjct: 482 STWMNPKSEGVDELNKLLKTPMAREASGEDLLRRPEITYSQLTQLEAFAPALEDQQAA-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP +
Sbjct: 540 --EQVEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+++KK+
Sbjct: 598 IGIASRISGITPAAISILLVHLKKH 622


>gi|119503566|ref|ZP_01625649.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2080]
 gi|119460628|gb|EAW41720.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2080]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/618 (45%), Positives = 397/618 (64%), Gaps = 8/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+V+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 6   QHYDVLVVGGGHAGTEAALAAARTGAKTLLLTHAIDTLGQMSCNPAIGGIGKSHLVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M R AD AGIQFRVLN +KGPAVR  R Q+DR LYR  ++  +L+Q NLD+ Q  
Sbjct: 66  ALGGVMARAADHAGIQFRVLNRRKGPAVRATRAQSDRVLYRNFIRTTLLNQPNLDIFQDS 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S  V ++    +  TVVLT GTFLRG +H G  +   GR GD+ S SL 
Sbjct: 126 VEDLTLDGHRVSGAVTRNGLKFKGHTVVLTAGTFLRGRLHTGMSQHEGGRAGDAASISLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
           +   +     GRLKTGTP R+D +T+ +   ++Q+ DE     S   D+  + +Q+ C +
Sbjct: 186 DRLRELCPRVGRLKTGTPPRVDARTVDFSALQEQWGDEPRPVMSLYGDRSDHPQQMCCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II + +  S ++ G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 246 TETNTQTHDIIRQGLDRSPLFGGVIEGNGPRYCPSIEDKIHRFADKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G++  +I RPGYAIEYDY +P++L  +LET++I G
Sbjct: 306 TELYPNGISTSLPFDVQLNLVRSIAGMQSAHITRPGYAIEYDYFDPRDLKHSLETREIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+A+K+         R ++YIGV++DDL + G  E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGVNAAQKAADRPAWEPGRDEAYIGVLVDDLVTLGTQE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA--KYIQEYNFLRSLLKS 480
           PYRMFTSRAEYR+ LR DNAD RLT  G  LG + + +   F   K   E    R  L++
Sbjct: 426 PYRMFTSRAEYRLLLREDNADLRLTEHGRNLGLVTDEQWDTFTTRKATIEEELHR--LET 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +  +  ++ K        Y   + L  P+    ++  +   A   +    +++ 
Sbjct: 484 TYIQPGSTQAEQLTPKIKKPLVREYSLADLLRRPELEYHDVAGLSGTACVTTEHAADQVA 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            +  YA Y  RQ  +  ++  +E  +IP D D++++  LSNE+++KL+  +P  + +A +
Sbjct: 544 TQIKYAGYIERQAEDIAKLHRQESAVIPDDIDFANVRGLSNEIQQKLTAARPSTIARAGR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAAL+LLL+YIK+
Sbjct: 604 ISGVTPAALSLLLVYIKR 621


>gi|125808684|ref|XP_001360830.1| GA18299 [Drosophila pseudoobscura pseudoobscura]
 gi|54636002|gb|EAL25405.1| GA18299 [Drosophila pseudoobscura pseudoobscura]
          Length = 659

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/633 (44%), Positives = 415/633 (65%), Gaps = 26/633 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 30  YDVVVIGGGHAGTEASAAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 89

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ GR  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S +NL++    V 
Sbjct: 90  DGVCGRCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKKAVQKELHSTQNLEIRAAAVD 149

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    +    + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGRMGD+P+ 
Sbjct: 150 NILIEDEQHQHRRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRMGDAPAK 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237
           +L  +  +  F  GRLKTGTP R+   ++ + + E+   D+   PFSF+   +      Q
Sbjct: 210 ALGEAIDRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEGDDPPTPFSFLNSHVWLPAKEQ 269

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T    + I+  N+  +   + +I   GPRYCPSIE KI+RFG R  HQ++LEP
Sbjct: 270 LPCHLTYTTPLVNDIVRNNLHVNRHVTEEIT--GPRYCPSIESKILRFGARV-HQVWLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ +VYP GIS  LP E Q + +  I GLE   +++PGY +EYD+I+P+ELFPTLET
Sbjct: 327 EGLDSPLVYPQGISCTLPHEQQVELVHAIKGLEHAEVVQPGYGVEYDFIDPRELFPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDDL 415
           K++ GLF AGQINGTTGYEEAAAQG+VAG N+A K+   D   +  SRT+ YIGV++DDL
Sbjct: 387 KRVPGLFFAGQINGTTGYEEAAAQGIVAGANAAGKTRHADGRQLTISRTEGYIGVLVDDL 446

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           TS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E    RF  + Q    L+
Sbjct: 447 TSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTNKGYEYGLVSE---NRFRHFKQAEERLQ 503

Query: 476 SLLKSLVLTSKNLS----STSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF- 528
           S +++L    K+ +    S  +   +    +TA++ L+ P  + ++  L ++ P    + 
Sbjct: 504 SGMEALRGLRKHSNYWRQSLDLPTSKASVEKTAFDMLAIPADNITVDKLINLFPTELSWL 563

Query: 529 --SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLS 585
              + + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S + +LSNE ++KLS
Sbjct: 564 RDDNNLAERLKIEALYSFFVEEQQRDVEDVRREERLAIPADIDYFSKVLSLSNEERQKLS 623

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +++P  +  AS+I+G+TP+ +  ++ Y+KK  V
Sbjct: 624 LIQPQTIAAASRIQGVTPSTIVRIMKYVKKADV 656


>gi|251811360|ref|ZP_04825833.1| glucose inhibited division protein A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805109|gb|EES57766.1| glucose inhibited division protein A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 630

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/619 (44%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 8   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 68  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 128 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 188 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 248 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 308 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 368 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 428 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDVRI 487

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +   I  K   + +    A + L  P+ + + +  I  ++ +    V E+++I++
Sbjct: 488 KPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEIQT 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 548 KYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVESLASEAREKLAEVKPLNIAQASRISG 607

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 608 VNPADISILLVYLEQGKLQ 626


>gi|33591276|ref|NP_878920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella pertussis Tohama I]
 gi|81170529|sp|Q7W0T0|MNMG_BORPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33570918|emb|CAE40381.1| glucose inhibited division protein A [Bordetella pertussis Tohama
           I]
 gi|332380678|gb|AEE65525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella pertussis CS]
          Length = 639

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 297/627 (47%), Positives = 406/627 (64%), Gaps = 17/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ +Q NL + Q  
Sbjct: 65  ALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRNAIRAQLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NSL 
Sbjct: 125 VDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGLN
Sbjct: 245 ITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK IS
Sbjct: 305 THEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRS- 476
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++      QE   L+S 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLKST 484

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
            +   VL +   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 485 WVNPRVLPAH--AAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DQVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|157377627|ref|YP_001476227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sediminis HAW-EB3]
 gi|189039359|sp|A8G1X6|MNMG_SHESH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157320001|gb|ABV39099.1| glucose inhibited division protein A [Shewanella sediminis HAW-EB3]
          Length = 632

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/620 (48%), Positives = 387/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQEILQNQPNLRLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENGKVTGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGMQNYSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI +D   +Q  D  L   SF+ D   + RQ+ C +T 
Sbjct: 187 LRELPIRIGRLKTGTPPRIDANTINFDLMTEQKGDTPLPVMSFIGDVSHHPRQVSCFVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNERTHDIIRGGLDRSPMYSGIIEGVGPRYCPSIEDKINRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKESWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSLL-- 478
           RMFTSRAEYR+ LR DNAD RLT  G ++G + E R  +F K  +    E   LRS    
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGHQIGLVDEDRWAKFNKKRESIELELQRLRSQWVH 486

Query: 479 -KSLVLTSKNLS-STSISFKQDGKTRTAYEFLSYPDF-SIQNLFSICPDARKFSSLVIER 535
             S +L   N   +T IS +   +       + YP   S++       D R       E+
Sbjct: 487 PNSPLLEVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPALEDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQDEIDKAIKHETTGLPLELDYQEVPGLSNEVIAKLNDHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++K+
Sbjct: 602 SRISGMTPAAISILLVHLKR 621


>gi|217975459|ref|YP_002360210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS223]
 gi|254811519|sp|B8EDW1|MNMG_SHEB2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|217500594|gb|ACK48787.1| glucose inhibited division protein A [Shewanella baltica OS223]
          Length = 629

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 383/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I             E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|254000527|ref|YP_003052590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylovorus sp. SIP3-4]
 gi|253987206|gb|ACT52063.1| glucose inhibited division protein A [Methylovorus sp. SIP3-4]
          Length = 631

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/615 (46%), Positives = 395/615 (64%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQANLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +    + +V Q         VVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DIILDGTRAAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +    +Q  D+ +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMLEQPGDDPVPVFSFLGNASQHPAQLPCWITS 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 IYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKNSLETKAVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  + + D  C +R  +Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYAQEKDSWCPARDQAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSLLKS 480
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R + F++     ++E   LR     
Sbjct: 427 RMFTSRAEYRLMLREDNADMRLTEAGRRIGLVDDARWEAFSRKQEAILREQERLRKTYVH 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               S ++    +  KQ  +  + +E L  P+ S + L ++     +    V ++++I +
Sbjct: 487 PGQVSADVMEKVLG-KQIDREYSMFELLRRPEVSYEALLTLAEGDGEQDEQVRQQIEIAA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E +  + +E   +P D DY  +  LS E ++KL+  KP  + QAS+I G
Sbjct: 546 KYQGYIDRQADEIERQRGQEDTRLPADMDYREVHGLSIEAQQKLNAQKPETVGQASRISG 605

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLL+++K+
Sbjct: 606 ITPAAISLLLVHLKR 620


>gi|324329434|gb|ADY24694.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 629

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIRLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|126176558|ref|YP_001052707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS155]
 gi|166200611|sp|A3DAS5|MNMG_SHEB5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125999763|gb|ABN63838.1| glucose inhibited division protein A [Shewanella baltica OS155]
          Length = 629

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 383/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I             E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|15606146|ref|NP_213523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aquifex aeolicus VF5]
 gi|3913739|sp|O66962|MNMG_AQUAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2983328|gb|AAC06917.1| glucose inhibited division protein A [Aquifex aeolicus VF5]
          Length = 617

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/625 (47%), Positives = 392/625 (62%), Gaps = 30/625 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EAA  AA++GA TA+      TIG MSCNPAIGG+ KG +VREIDA
Sbjct: 7   EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D  GIQF++LN +KG AV+ PR QAD++ YR  M++   +QENL + Q EV
Sbjct: 67  LGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +        +   VV+TTGTFL GVI+IG   IP GR+G+  S  L +
Sbjct: 127 VDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-------RQ 237
            + +FDF   R KTGTPARLD +TI +   E    D+    FSF T+ + +        Q
Sbjct: 187 FYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQ 246

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDKIV+F ++  HQIFLEP
Sbjct: 247 VNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEP 306

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T  +YPNG+ST+LPEE+Q +  R+IPGLE V +IRP YAIEYD + P EL+PTLET
Sbjct: 307 EGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLET 366

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMIDDLT+
Sbjct: 367 KKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTT 426

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSR+EYR+ +R DNA  RL  +G +LG + E          ++Y  ++ L
Sbjct: 427 KGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSE----------EQYKLVKEL 476

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS------S 530
            + +    +   S  +S    G TR      SY   ++  +     D + KF        
Sbjct: 477 EREIEKWKEFYKSERVSVAVGGDTR------SYSVATLMTMNYTLDDVKEKFGYEVPQHP 530

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E ++I+  Y  Y  R+    +++K  E   IP D DY  +P L+ E +EKL   KP 
Sbjct: 531 YVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPI 590

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I+G+TPAA+  LL+Y+ K
Sbjct: 591 TVGQASRIDGITPAAITALLVYLGK 615


>gi|300118815|ref|ZP_07056535.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus SJ1]
 gi|298723783|gb|EFI64505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus SJ1]
          Length = 629

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLITEDRYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|289547841|ref|YP_003472829.1| glucose inhibited division protein A [Thermocrinis albus DSM 14484]
 gi|289181458|gb|ADC88702.1| glucose inhibited division protein A [Thermocrinis albus DSM 14484]
          Length = 614

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/631 (46%), Positives = 391/631 (61%), Gaps = 35/631 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV+VIGGGHAG EAA  +A++GA TA+      TIG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVDEFDVVVIGGGHAGIEAALASARMGAKTAMFVLNADTIGQMSCNPAIGGVAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D  GIQF++LN +KG AV  PR QAD++ YR  M+R    QENL + 
Sbjct: 61  EIDALGGEMGKAIDTTGIQFKMLNTRKGKAVWSPRAQADKKRYREYMKRVCEQQENLYIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E + + ++  +     +   VV+TTGTFL GVI+IG    PAGR  +  S 
Sbjct: 121 QDEVVDIVVENDRVVAVRTRLGLEYKTKAVVVTTGTFLNGVIYIGDKTFPAGRAWEPSSK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----- 235
            L   + +  F   R KTGTPARLDG+TI +   E    D+    FSF T+ + +     
Sbjct: 181 DLSQFYKRHGFPLLRFKTGTPARLDGRTIDYSVLEPAPGDDPPPKFSFWTEPMGSYWFPP 240

Query: 236 --RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F +++ HQ+
Sbjct: 241 GKEQVLCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFADKDRHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL+T  VYPNG+ST+LPEE+Q +  R+IPGLEKV +IRP YAIEYD + P EL+P
Sbjct: 301 FLEPEGLDTIEVYPNGLSTSLPEEVQWELYRSIPGLEKVELIRPAYAIEYDVVPPTELYP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKI GLF AG  NGTTGYEEAA QG++AGIN+A ++   + I   R +SYIG+M+D
Sbjct: 361 TLETKKIRGLFHAGNFNGTTGYEEAAGQGILAGINAALRAMGKEPIYLRRDESYIGIMVD 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE---RRQKRFAKYIQE 470
           DLT+KGV EPYR+FTSR+EYR+ LR DNA  RL  IG  LG + E   R  K   + IQ 
Sbjct: 421 DLTTKGVTEPYRLFTSRSEYRLYLRQDNAILRLAHIGRNLGLLSEDQYRMVKELKEEIQR 480

Query: 471 Y-NFLRSLLKSLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
           +  F +S    + + S     T     +  +  +  TR  +E  S+P             
Sbjct: 481 WIEFYKSARVVVAVGSDTRPYTPSQLLTSQYTLEDLTRWGFEIPSHP------------- 527

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                  V E ++IE  Y  Y  R+    +++K  E  +IP+D DY  +P L+ E +EKL
Sbjct: 528 ------YVREEVEIELKYEPYIEREKKLNEKLKKLEDTVIPEDIDYDKVPGLTTEAREKL 581

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
              +P  + QAS+I+G+TPAA+  LL Y+ K
Sbjct: 582 KKFRPITVGQASRIDGITPAAITALLAYLGK 612


>gi|30265501|ref|NP_847878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Ames]
 gi|47531069|ref|YP_022418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188320|ref|YP_031573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Sterne]
 gi|49481136|ref|YP_039473.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65317464|ref|ZP_00390423.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Bacillus anthracis str. A2012]
 gi|118480510|ref|YP_897661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis str. Al Hakam]
 gi|165873038|ref|ZP_02217659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0488]
 gi|167635097|ref|ZP_02393414.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0442]
 gi|167641741|ref|ZP_02399984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0193]
 gi|170689473|ref|ZP_02880663.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0465]
 gi|170707574|ref|ZP_02898027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0389]
 gi|177655265|ref|ZP_02936819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0174]
 gi|227818252|ref|YP_002818261.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CDC 684]
 gi|228918095|ref|ZP_04081623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930489|ref|ZP_04093489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228936763|ref|ZP_04099554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229124986|ref|ZP_04254160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 95/8201]
 gi|229187712|ref|ZP_04314848.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BGSC 6E1]
 gi|229600914|ref|YP_002869692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0248]
 gi|254687076|ref|ZP_05150934.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724141|ref|ZP_05185926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A1055]
 gi|254735158|ref|ZP_05192868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Western North America USA6153]
 gi|254742133|ref|ZP_05199820.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Kruger B]
 gi|254755957|ref|ZP_05207989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Vollum]
 gi|254761363|ref|ZP_05213385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Australia 94]
 gi|301056957|ref|YP_003795168.1| glucose-inhibited division protein A [Bacillus anthracis CI]
 gi|38372308|sp|Q81JH3|MNMG_BACAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170518|sp|Q6HAF3|MNMG_BACHK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222907|sp|A0RLR1|MNMG_BACAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|30260179|gb|AAP29364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Ames]
 gi|47506217|gb|AAT34893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182247|gb|AAT57623.1| glucose-inhibited division protein A [Bacillus anthracis str.
           Sterne]
 gi|49332692|gb|AAT63338.1| glucose-inhibited division protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118419735|gb|ABK88154.1| glucose-inhibited division protein A [Bacillus thuringiensis str.
           Al Hakam]
 gi|164711250|gb|EDR16806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0488]
 gi|167510295|gb|EDR85698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0193]
 gi|167529571|gb|EDR92321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0442]
 gi|170127570|gb|EDS96444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0389]
 gi|170666575|gb|EDT17348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0465]
 gi|172080192|gb|EDT65284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0174]
 gi|227002905|gb|ACP12648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CDC 684]
 gi|228595780|gb|EEK53464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BGSC 6E1]
 gi|228658487|gb|EEL14153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 95/8201]
 gi|228822972|gb|EEM68813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829208|gb|EEM74845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228841575|gb|EEM86691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229265322|gb|ACQ46959.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0248]
 gi|300379126|gb|ADK08030.1| glucose-inhibited division protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 629

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|295698336|ref|YP_003602991.1| glucose-inhibited division protein A [Candidatus Riesia
           pediculicola USDA]
 gi|291157273|gb|ADD79718.1| glucose-inhibited division protein A [Candidatus Riesia
           pediculicola USDA]
          Length = 622

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/630 (46%), Positives = 398/630 (63%), Gaps = 22/630 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++DVIV+GGGHAG E A  ++K+G  T LITH    IG +SCNP+IGG+GKGHLV+E
Sbjct: 1   MKNNFDVIVVGGGHAGSEGAFASSKIGCKTLLITHNMRKIGELSCNPSIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+DG+M   AD +GI F+ LN KKG AV+  R Q DR+ Y+ ++  ++  Q+N+ +IQ
Sbjct: 61  IDAMDGIMAVAADESGIHFKKLNSKKGSAVQSTRVQVDRKKYKSSVINQMKKQKNIFIIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V       N +  +  +++      +VVL+ GTFL G IHIG      GR+ D  S +
Sbjct: 121 QSVKKLILRNNRVIGVTTEEDIQFFSKSVVLSAGTFLNGRIHIGSKIFSGGRIRDVSSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L      F F   RLKTGTP R+D KTI +   EKQ  D  +  FSF+   DK   +QI 
Sbjct: 181 LIKQLRCFPFKIKRLKTGTPPRIDTKTIDFSCLEKQLGDYPISHFSFLKKIDKY-RKQIT 239

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II+EN+  S IYSG I+  GPRYCPSIEDKIV+F  ++ H IFLEPEG
Sbjct: 240 CYITHTNDKTHEIILENLHKSPIYSGKIQGIGPRYCPSIEDKIVKFQNQSSHHIFLEPEG 299

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           + +  VYPNGIST+LP +IQ +F+R+I GLEK  II PGYA+EYD+ +P++L  TLE+K 
Sbjct: 300 IRSRKVYPNGISTSLPVDIQEKFVRSIRGLEKAKIIDPGYAVEYDFFDPRDLKQTLESKI 359

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLFLAGQINGTTGYEEAA+QGL+AG+N+A  S K D     R  +YIGV+IDDL + G
Sbjct: 360 IDGLFLAGQINGTTGYEEAASQGLIAGLNAALYSLKEDQWYPKRDQAYIGVLIDDLCTVG 419

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----------QKRFAKYI 468
             EPYRMFT+R+EYR+SLR DNAD RLT +G  LG + + R           +K F K+ 
Sbjct: 420 TEEPYRMFTARSEYRLSLREDNADLRLTKLGYSLGVVRKERLSILKKKIKLIEKEFIKF- 478

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
             + +L+   K   + ++NL S+        KT    E L  P+ + + LF     + K 
Sbjct: 479 -RHTWLKKGSKKFEIMNENLRSSC------NKTINIEELLKRPEVTCEKLFQFGILSEKD 531

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +  + + L+ +  Y  Y  +Q +E ++  F E   IPKD  Y  +  LS E+  KL   K
Sbjct: 532 NMEIYKILESQIKYRGYIKKQELEIQKKNFYENIKIPKDIKYQKICGLSKEVLSKLDYHK 591

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           P ++ QAS+I G+TP+A+++LLI++KK  V
Sbjct: 592 PNSIGQASRISGVTPSAISILLIWMKKRKV 621


>gi|47568682|ref|ZP_00239379.1| glucose inhibited division protein A [Bacillus cereus G9241]
 gi|228988712|ref|ZP_04148797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554670|gb|EAL13024.1| glucose inhibited division protein A [Bacillus cereus G9241]
 gi|228771024|gb|EEM19505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 629

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|220930843|ref|YP_002507752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium cellulolyticum H10]
 gi|220001171|gb|ACL77772.1| glucose inhibited division protein A [Clostridium cellulolyticum
           H10]
          Length = 627

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 401/622 (64%), Gaps = 18/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD++V+GGGHAGCEAA  AA+LG ST + +    +I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   NYDIVVVGGGHAGCEAALAAARLGCSTIIFSINLDSIANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLD+ Q EV
Sbjct: 67  LGGQMGKATDKTFIQSKILNSSKGPAVYSLRAQVDRRQYQMEMKNILEKQENLDIRQSEV 126

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               T++N   ++ +     ++  C  VVLTTGT+L+G I IG +    G  G  P+N L
Sbjct: 127 VEILTDENKTKVTGVKTHTGAIFHCKAVVLTTGTYLKGRIFIGDVNYSGGPDGLFPANKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S      +  R KTGTPARL+ +++ + K  +Q  D+ ++PFSF T+KI   Q+ C +
Sbjct: 187 SESLQNLGLNLIRFKTGTPARLNRQSLNFSKMSEQPGDDVIVPFSFETEKIDKEQVSCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN ETH +I  NI  S +YSG+I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL T
Sbjct: 247 TYTNQETHEVIKRNIHKSPLYSGNITGVGPRYCPSIEDKVVRFSDKEHHQVFVEPMGLET 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q +F+RTIPGLE V ++R  YAIEYD I+  +L  +LE K ++G
Sbjct: 307 EEMYLQGMSSSLPEDVQIEFMRTIPGLENVKVMRSAYAIEYDGIDATQLKLSLEYKDVAG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQING++GYEEAAAQG+VAGIN+  K    + + F R+ +YIGV+IDDL +KG  E
Sbjct: 367 LFSAGQINGSSGYEEAAAQGIVAGINAVMKIKNREPLVFDRSQAYIGVLIDDLVTKGTKE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLTPIG ++G I E R KRF   +++   +   ++ L 
Sbjct: 427 PYRMMTSRAEYRLLLRQDNADLRLTPIGREIGLISEERYKRF---LEKKEMIEKEIERLK 483

Query: 483 LTSKNLSSTSISFKQDGKTRTAY-------EFLSYPDFSIQNLFSIC--PDARKFSSLVI 533
            T    S    S+ ++ +  TA        E L  P+ S ++L  IC  PD       V 
Sbjct: 484 KTYLPPSEKVQSYLEN-RNSTAIKSGIQVTELLRRPEISYESLSEICELPD---LPRAVR 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++++   Y  Y  RQM + ++ K  E R +P D DY+ +  L  E ++KLS +KP ++ 
Sbjct: 540 EQVEVAVKYEGYIKRQMQQVEQYKKLEGRKLPHDIDYNEIQGLRLEARQKLSQIKPDSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LLIY+++
Sbjct: 600 QASRITGVSPADISVLLIYLEQ 621


>gi|228949205|ref|ZP_04111473.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228810488|gb|EEM56841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 629

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEKEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|167582846|ref|ZP_02375720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis TXDOH]
          Length = 657

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 389/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAV   R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVHATRAQADRVLYKQAIRRYLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     +  Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRPEQHPEQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRHALEKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T +  K      +  E L  P  S   +  +    C  +   +      +
Sbjct: 487 TPKTLPADEATELLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDALLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++KK
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKK 631


>gi|218711034|ref|YP_002418655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio splendidus LGP32]
 gi|254811523|sp|B7VN07|MNMG_VIBSL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|218324053|emb|CAV20415.1| gid A : glucose inhibited division protein A [Vibrio splendidus
           LGP32]
          Length = 631

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/625 (45%), Positives = 392/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +      F   RLKTGTP R+D +++ + + E Q  D     FSFM ++    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGNRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWTRFNEKMENMEKERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +  K+        +  T +S +  G+       ++Y   +  + F    + ++ S  
Sbjct: 482 ETWINPKSEDIDQLNQILKTPMSREASGEDLLRRPEMTYSQLTSLDRFGPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDS 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+Y+KK+
Sbjct: 598 IGIASRISGITPAAISILLVYLKKH 622


>gi|160877619|ref|YP_001556935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS195]
 gi|189039356|sp|A9KX17|MNMG_SHEB9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160863141|gb|ABX51675.1| glucose inhibited division protein A [Shewanella baltica OS195]
 gi|315269817|gb|ADT96670.1| glucose inhibited division protein A [Shewanella baltica OS678]
          Length = 629

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/615 (47%), Positives = 382/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   + +QI C IT 
Sbjct: 187 LRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT  
Sbjct: 247 TNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I+GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRGQWVH 486

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
            +  L            +R A   E L  P+     L  I             E++QI+ 
Sbjct: 487 PNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|268680449|ref|YP_003304880.1| glucose inhibited division protein A [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618480|gb|ACZ12845.1| glucose inhibited division protein A [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 624

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/614 (47%), Positives = 388/614 (63%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA+  AA+LG  T LI+     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 3   YDVIVIGGGHAGIEASLAAARLGNKTLLISILAEQIGAASCNPAIGGLAKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN+ KGPAVRG R Q D + YR+ M+  IL+ ENL V Q    
Sbjct: 63  GGQMALATDNAGIQFRTLNLSKGPAVRGSRAQIDMDRYRIYMRTIILNTENLYVAQEMAE 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++  ++ ++ Q  +      V+LTTGTFL G+IHIG+ +  AGR+G+ PS +L  S
Sbjct: 123 TLVAQEGKVTGVITQFGNHYHAPKVILTTGTFLNGLIHIGEFQQEAGRVGEFPSRTLSES 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGIT 243
                   GRLKTGT AR+D K+I + K E Q  DE  +PFSF T + T +  Q+ C IT
Sbjct: 183 IKSLGITMGRLKTGTCARIDAKSIDFSKMELQPGDENPLPFSFRTTRETFKPFQLPCYIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N   + +++G I   GPRYCPSIEDKI RF ++  H +F+EP+     
Sbjct: 243 YTNEDTHTLIESNFHRAPLFTGQISGIGPRYCPSIEDKINRFRDKERHHLFIEPQTREAT 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG +T+LP + Q   I ++ G+E   I+R GYAIEYDY++P EL  +LETKKI GL
Sbjct: 303 EYYINGFATSLPTDTQLNMIHSVEGMENARIVRYGYAIEYDYVDPTELKHSLETKKIEGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AGIN++      + + F R ++YIGV+IDDL +KG  EP
Sbjct: 363 YCAGQINGTTGYEEAAAQGLMAGINASLALRDEEPLIFRRDEAYIGVLIDDLVTKGTKEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RL P G KLG I E+  ++  K  +E N   + L++  L
Sbjct: 423 YRMFTSRAEYRLLLREDNADLRLMPYGYKLGLIDEQTHQKMVKKRKELNEGVAYLEATTL 482

Query: 484 TSKNLSSTSI-SFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T  N ++  + S  +D  T   T  + ++  +FSI+ L  I P  + F+    E++ IE+
Sbjct: 483 TPSNENNAFLASIGEDKITDKVTLQKIVARSEFSIEKLEKIAPCVQNFTEEAKEQILIEA 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  +   +K      IP   D+SS+  LSNE+ EKL    P  L  AS+I G
Sbjct: 543 KYKNYIEKQKEQIDIMKEMMDVKIPPMMDFSSISGLSNEVVEKLQRFNPPTLFAASEISG 602

Query: 601 MTPAALNLLLIYIK 614
           +TPAAL++L +YIK
Sbjct: 603 ITPAALDILHVYIK 616


>gi|313202486|ref|YP_004041144.1| glucose inhibited division protein a [Methylovorus sp. MP688]
 gi|312441802|gb|ADQ85908.1| glucose inhibited division protein A [Methylovorus sp. MP688]
          Length = 631

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/615 (46%), Positives = 395/615 (64%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQANLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +    + +V Q         VVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DIILDGTRAAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +    +Q  D+ +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMLEQPGDDPVPVFSFLGNASQHPAQLPCWITS 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 IYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKNSLETKAVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  + + D  C +R  +Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYAQEKDSWCPARDQAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSLLKS 480
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R + F++     ++E   LR     
Sbjct: 427 RMFTSRAEYRLMLREDNADMRLTEAGRRIGLVDDARWEAFSRKQEAILREQERLRKTYVH 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               S ++    +  KQ  +  + +E L  P+ S + L ++     +    V ++++I +
Sbjct: 487 PGQVSADVMEKVLG-KQIDREYSMFELLRRPEVSYEALLTLAEGDGEQDEQVRQQIEIAA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E +  + +E   +P D DY  +  LS E ++KL+  KP  + QAS+I G
Sbjct: 546 KYQGYIDRQADEIERQRGQEDTPLPADMDYREVHGLSIEAQQKLNAQKPETVGQASRISG 605

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++LLL+++K+
Sbjct: 606 ITPAAISLLLVHLKR 620


>gi|91229124|ref|ZP_01262897.1| glucose-inhibited division protein A [Vibrio alginolyticus 12G01]
 gi|269965286|ref|ZP_06179407.1| glucose-inhibited division protein A [Vibrio alginolyticus 40B]
 gi|91187436|gb|EAS73779.1| glucose-inhibited division protein A [Vibrio alginolyticus 12G01]
 gi|269830087|gb|EEZ84315.1| glucose-inhibited division protein A [Vibrio alginolyticus 40B]
          Length = 631

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 387/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKINNMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
           +  +  K+        L  T ++ +  G+     + L  P+ +   L  +   A      
Sbjct: 482 ATWMNPKSEGVDELNKLLKTPMAREASGE-----DLLRRPEITYSQLTQLEAFAPALEDQ 536

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP 
Sbjct: 537 QAAEQVEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
           ++  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 SIGIASRISGITPAAISILLVHLKKH 622


>gi|171315838|ref|ZP_02905069.1| glucose inhibited division protein A [Burkholderia ambifaria MEX-5]
 gi|171099027|gb|EDT43812.1| glucose inhibited division protein A [Burkholderia ambifaria MEX-5]
          Length = 656

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/625 (45%), Positives = 387/625 (61%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQSNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P      +  +    C  A   +       
Sbjct: 487 TPKTLPPEEATALLGKAIDHEYSLAELLRRPGIGYDGVCGLKGGECAPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|33598994|ref|NP_886554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella bronchiseptica RB50]
 gi|81170526|sp|Q7WRF1|MNMG_BORBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33575040|emb|CAE30503.1| glucose inhibited division protein A [Bordetella bronchiseptica
           RB50]
          Length = 639

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 297/627 (47%), Positives = 405/627 (64%), Gaps = 17/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRNAIRARLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NSL 
Sbjct: 125 VDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGLN
Sbjct: 245 ITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK IS
Sbjct: 305 THEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRS- 476
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++      QE   L+S 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLKST 484

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
            +   VL +   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 485 WVNPRVLPAH--AAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|84394517|ref|ZP_00993227.1| glucose inhibited division protein A [Vibrio splendidus 12B01]
 gi|84374870|gb|EAP91807.1| glucose inhibited division protein A [Vibrio splendidus 12B01]
          Length = 631

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/625 (45%), Positives = 391/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +      F   RLKTGTP R+D +++ + + E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGSRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWVRFNEKVENMEKERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +  K+        +  T +S +  G+       ++Y   +  + F    + ++ S  
Sbjct: 482 ETWINPKSEDVDQLNQILKTPMSREASGEDLLRRPEMTYSQLTALDRFGPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDS 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+Y+KK+
Sbjct: 598 IGIASRISGITPAAISILLVYLKKH 622


>gi|295402128|ref|ZP_06812087.1| glucose inhibited division protein A [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112751|ref|YP_003991067.1| glucose inhibited division protein A [Geobacillus sp. Y4.1MC1]
 gi|294975811|gb|EFG51430.1| glucose inhibited division protein A [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217852|gb|ADP76456.1| glucose inhibited division protein A [Geobacillus sp. Y4.1MC1]
          Length = 629

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/619 (46%), Positives = 396/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALAAARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMARNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKTVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTPETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRQLLATIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+AR++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARRALGKEEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    +     +  L++ ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYKIGLISEERYQKFLAKKEAIEREKKRLQTFIIK 486

Query: 484 ----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 K +     S  +DG  R A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PTPEVQKVIREAGGSELKDG-IRAA-DLLRRPEMTYEHIKQLAPAEEEISPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQQVERLKKMENKKIPEDIDYDAIHGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|229159043|ref|ZP_04287099.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 4342]
 gi|228624462|gb|EEK81233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 4342]
          Length = 629

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 393/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|282891142|ref|ZP_06299646.1| hypothetical protein pah_c047o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498959|gb|EFB41274.1| hypothetical protein pah_c047o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 612

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/615 (46%), Positives = 396/615 (64%), Gaps = 17/615 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAGCEAA  A+ +GA T L+T    TIG MSCNPAIGG+ KGH+VREID
Sbjct: 6   KKYDVIVMGGGHAGCEAAFAASGMGAQTLLLTMNLDTIGKMSCNPAIGGIAKGHIVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+V D  GIQ+R+LN  +GP+V  PR QAD+  Y++ ++  +  Q NL++ QG 
Sbjct: 66  ALGGIMGKVTDVTGIQYRMLNSTRGPSVWAPRAQADKNAYQMEVKYRLEKQPNLEIKQGT 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     E + I  ++ ++  +   ST+++++GTFLRG++HIG+     GR GD PS  L 
Sbjct: 126 IEDLIVENDRIQGVITKEGIIYYTSTLIISSGTFLRGLLHIGETNYSGGRAGDQPSVGLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIECGI 242
            S  KF F  GRLKTGTP R++ ++I +  TE+Q  D   + FSF   ++    Q+ C I
Sbjct: 186 ASLEKFGFKLGRLKTGTPPRVNRRSIDFSLTEEQPGDPN-VKFSFDEVERPRLPQVSCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ET +II+ NI  S +YSG IK  G RYCPSIEDK+VRF ++  HQIFLEPEGL T
Sbjct: 245 TYTTEETKQIILANIHRSPMYSGQIKGIGTRYCPSIEDKVVRFSDKERHQIFLEPEGLQT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LP ++Q  FI++IP L    I+RP YAIEYDY+   ++  +LET  + G
Sbjct: 305 EEIYVNGVSSSLPFDVQLAFIQSIPALRNAEIMRPAYAIEYDYVTSGQMTASLETTHLEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGT+GYEEAA QGL+AGIN+A K+     +  SR+++YIGVMIDDL +K + E
Sbjct: 365 LFLAGQINGTSGYEEAAGQGLIAGINAASKALSQPPLILSRSEAYIGVMIDDLITKKLDE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL   G + G I            ++Y  L+   K + 
Sbjct: 425 PYRMFTSRAEHRLLLRQDNADLRLRHYGYEKGIIN----------TEQYARLQHKKKMMQ 474

Query: 483 LTSKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
             +  L      FKQ +GK  +  + L  P+ + Q+L +  P D       +  +++++ 
Sbjct: 475 EETARLGKV---FKQLNGKGYSLAQLLCRPEITYQSLLNDYPDDVIDHGEDINMQIELDL 531

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SYA Y  RQ  E  + +  E   IP+ FD+SS+  L NE KEKL    PF L QAS+I G
Sbjct: 532 SYAGYIERQKGEVAKFEHLENIRIPEKFDFSSVSGLRNEAKEKLKKHFPFTLGQASRISG 591

Query: 601 MTPAALNLLLIYIKK 615
           ++PA +++L+I + K
Sbjct: 592 VSPADISILMIALAK 606


>gi|170694309|ref|ZP_02885463.1| glucose inhibited division protein A [Burkholderia graminis C4D1M]
 gi|170140732|gb|EDT08906.1| glucose inhibited division protein A [Burkholderia graminis C4D1M]
          Length = 652

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 389/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK ISGL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQGKDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + E R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDEVRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
             K LS   +T++  K      +  + L  P  S   + ++    C      +      +
Sbjct: 487 NPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPGTLAEDEVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQADEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|86147165|ref|ZP_01065481.1| glucose-inhibited division protein A [Vibrio sp. MED222]
 gi|85835049|gb|EAQ53191.1| glucose-inhibited division protein A [Vibrio sp. MED222]
          Length = 631

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/625 (45%), Positives = 391/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +      F   RLKTGTP R+D +++ +   E Q  D     FSFM ++    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSDLEVQHGDNPTPVFSFMGNRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWTRFNEKMENMEKERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +  K+        +  T +S +  G+       ++Y   +  + F    + ++ S  
Sbjct: 482 ETWINPKSEDIDQLNQILKTPMSREASGEDLLRRPEMTYSQLTSLDRFGPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDS 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+Y+KK+
Sbjct: 598 IGIASRISGITPAAISILLVYLKKH 622


>gi|242243259|ref|ZP_04797704.1| glucose inhibited division protein A [Staphylococcus epidermidis
           W23144]
 gi|242233208|gb|EES35520.1| glucose inhibited division protein A [Staphylococcus epidermidis
           W23144]
          Length = 630

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/622 (44%), Positives = 397/622 (63%), Gaps = 3/622 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++ + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VR
Sbjct: 5   IVVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++
Sbjct: 65  EIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIM 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS 
Sbjct: 125 QGMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSV 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C
Sbjct: 185 TLADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPC 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG 
Sbjct: 245 WLTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGR 304

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I
Sbjct: 305 NTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAI 364

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG 
Sbjct: 365 KNLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGT 424

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  +F +  Q+       L  
Sbjct: 425 NEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYAKFNEKRQQIKDEIQRLTD 484

Query: 481 LVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +   I  K   + +    A + L  P+ + + +  I  ++ +    V E+++
Sbjct: 485 VRIKPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+
Sbjct: 545 IQTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASR 604

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+ PA +++LL+Y+++  ++
Sbjct: 605 ISGVNPADISILLVYLEQGKLQ 626


>gi|94263267|ref|ZP_01287083.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
 gi|93456350|gb|EAT06474.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
          Length = 629

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/631 (46%), Positives = 396/631 (62%), Gaps = 17/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN+ YD+IVIG GHAGCEAA  AA+LG  TA++     TIG++SCNPA+GGL KGHLV+
Sbjct: 1   MINQRYDIIVIGAGHAGCEAALAAARLGCDTAVLVMNADTIGALSCNPAVGGLAKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M R  DA GIQFR LN  KGPAVR  R QADR+ Y   +++ +  Q+NL + 
Sbjct: 61  EIDALGGEMARNIDATGIQFRRLNTSKGPAVRSSRAQADRQRYPARLKQVLEQQKNLTIR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  ++      +R   V++TTGTFL G+IHIG    PAGRMGD PS 
Sbjct: 121 QSTVDRLLVEDKRVVGVLTSLGEELRAGAVIITTGTFLNGLIHIGLKTFPAGRMGDMPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
           +L     +  F  GR+KTGT  RL G +I +   E QF D+    FSF     + T  Q+
Sbjct: 181 ALPTHLKELGFAMGRMKTGTTPRLAGNSIDYSGLEVQFGDDPPPLFSFANAGGRPTLPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T   TH II      S + SG I+  G RYCPSIEDK+ RF +++ HQIFLEPE
Sbjct: 241 PCHITYTGAATHEIIRAGCDRSPLLSGVIEGIGARYCPSIEDKVSRFADKDRHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  VYPNGIST+LP ++Q   +RTIPGLE+  ++RPGYAIEYDY++P EL P+LE+K
Sbjct: 301 GLDTTEVYPNGISTSLPMDVQLAMLRTIPGLEQARLVRPGYAIEYDYVDPLELQPSLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +++ LFLAGQINGT+GYEEAAAQGL+AGIN+AR+      +   R+ +YIGV+IDDL +K
Sbjct: 361 RLANLFLAGQINGTSGYEEAAAQGLLAGINAARQLGGQPPLVLDRSQAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RL PIG ++G + E+R + F    Q    L   L
Sbjct: 421 GTKEPYRLFTSRAEYRLLLREDNADARLCPIGWQIGLLDEQRYRAFEHKQQTMAELHQRL 480

Query: 479 KSLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           +   +     T++ L+  + S  +  ++ +  E L  P+  +  + ++   A + ++   
Sbjct: 481 RQTTIRPGPATNRRLAELASSPLR--QSCSLAELLKRPELDLAAVLALAQAAAEPATPAP 538

Query: 534 --------ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                     +Q+E  Y  Y  RQ  + +  +  E   +P D  Y  LP LS+E+ EKL 
Sbjct: 539 EAALPELGHEVQLEIKYEGYITRQREQVERFRKLESIRLPTDLVYRGLPGLSSEVVEKLE 598

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            ++P  L QA++I G+TPAAL +L +++K+ 
Sbjct: 599 KVRPRTLGQAARISGITPAALGVLQVHLKRE 629


>gi|163781998|ref|ZP_02176997.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882530|gb|EDP76035.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 616

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 293/634 (46%), Positives = 396/634 (62%), Gaps = 39/634 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   ++V VIG GHAG EAA  +A++GA T L T    +IG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVEEFEVAVIGAGHAGIEAALASARMGAKTLLFTLNADSIGQMSCNPAIGGIAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  D  GIQF++LN +KG AV+ PR QAD++ YR  M++    QENL + 
Sbjct: 61  EIDALGGEMGRAIDNTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCEDQENLHIK 120

Query: 121 QGEVAG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           Q EV       +N + ++  +     R   VV+TTGTFL G+I+IG    PAGR  +  S
Sbjct: 121 QDEVVDILLNARNEVVAVKTKLGIEYRVKAVVVTTGTFLNGLIYIGDKTFPAGRAWEPRS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN---- 235
            SL   + + DF   R KTGTPARLDG+TI +   E+   D+    FSF T+ + +    
Sbjct: 181 ESLAEFYKRHDFPLLRFKTGTPARLDGRTIDYSALERAPGDDPPPKFSFWTEPVGSYWFE 240

Query: 236 ---RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +Q++C +T T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F ++  H 
Sbjct: 241 AGKKQVDCWMTYTTEKTHEIIRKNLDKTALYGGLIKGVGPRYCPSIEDKVVKFPDKPRHT 300

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEGL+T  VYPNG+ST+LPEE+Q +  R+IPGLEKV ++RP YAIEYD + P ELF
Sbjct: 301 VFLEPEGLDTIEVYPNGLSTSLPEEVQWELYRSIPGLEKVELVRPAYAIEYDVVPPTELF 360

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTLETKKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMI
Sbjct: 361 PTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRALGREPIYLRRDESYIGVMI 420

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE-- 470
           DDLT+KGVLEPYR+FTSR+E+R+ LR DNA  RL  IG +LG + +  Q +  + +QE  
Sbjct: 421 DDLTTKGVLEPYRLFTSRSEFRLYLRQDNAILRLAEIGHRLGLLND-EQFKLVRELQEEI 479

Query: 471 ---YNFLRSLLKSLVLTSKNLSSTSISF------KQDGKTRTAYEFLSYPDFSIQNLFSI 521
                F R    S+ +     S T  +        +D + +  YE   +P          
Sbjct: 480 ERWKEFYRRERVSVAVGEDTRSYTVATLFTANHTVEDVREKLGYEIPEHP---------- 529

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                     V E ++IE  Y  Y  R+    +++K  E   IP+D DY S+  L+NE +
Sbjct: 530 ---------YVREEVEIELKYEPYIERERKLNEKLKRLEDIRIPEDIDYDSVHGLTNEAR 580

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           EKL  +KP  + QA++I+G+TPA++  LLI++ K
Sbjct: 581 EKLKKMKPLTVGQAARIDGITPASITALLIHLGK 614


>gi|253730396|ref|ZP_04864561.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725876|gb|EES94605.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 625

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGHELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  +  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILELLEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|293602669|ref|ZP_06685110.1| glucose-inhibited division protein A [Achromobacter piechaudii ATCC
           43553]
 gi|292818860|gb|EFF77900.1| glucose-inhibited division protein A [Achromobacter piechaudii ATCC
           43553]
          Length = 639

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 297/623 (47%), Positives = 394/623 (63%), Gaps = 13/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARAGARTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRQAIRGRLENQPNLWLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGLKFRAKTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAISLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG++I     E+Q  D   IP FS+M +  +  RQ+ C IT
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSINTSILEEQPGDLDPIPVFSYMGNVSMHPRQLPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+T 
Sbjct: 247 HTNSRTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLDTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q + I ++ GLE  +I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 307 EVYPNGVSTSLPFDVQLELIHSLRGLENAHIMRPGYAIEYDYFDPRGLKSTLETKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+A  S   D     R ++Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAALLSLGRDQWTPRRDEAYLGVLVDDLVTRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADLRLTEIGRQLGIVDDARWDAFNRKRDAVAAEVERLKSSWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS--------ICPDARKFSSLV 532
             + L    +  +  K   +  +  + L  P+ S + L +        +         ++
Sbjct: 487 NPRILPLEVAEPLLGKAIEREYSLADLLKRPNVSYEALMAARNADGSLLAGPGVVGDDVL 546

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E ++    E + IP D DY ++ +LS E+++KL   +P  +
Sbjct: 547 AEQVEIQVKYAGYIARQQDEVQKQISHELQPIPADVDYDAVTSLSFEVRQKLKTHRPETV 606

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA++I G+TPAA++LLLI++K+
Sbjct: 607 GQAARISGVTPAAISLLLIHLKR 629


>gi|170729227|ref|YP_001763253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella woodyi ATCC 51908]
 gi|205831557|sp|B1KQ45|MNMG_SHEWM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169814574|gb|ACA89158.1| glucose inhibited division protein A [Shewanella woodyi ATCC 51908]
          Length = 630

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 387/620 (62%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQEILQNQPNLRLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENGRVTGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGMQNYSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D  TI +D   +Q  D  L   SF+ D   + +QI C +T 
Sbjct: 187 LRELPIRIGRLKTGTPPRIDANTINFDLMTEQKGDTPLPVMSFIGDVSQHPKQISCFVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGLNT+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKSSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEIWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R  +F++  +     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGREIGLVDDERWAKFSEKRESIELELQRLRSQWVH 486

Query: 484 TSKNL-------SSTSISFKQDGKTRTAYEFLSYPDF-SIQNLFSICPDARKFSSLVIER 535
            +  L        +T IS +   +       + YP   S++       D R       E+
Sbjct: 487 PNSPLIDVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPGLDDPR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  KL+  KP  + QA
Sbjct: 542 VQIQVKYSGYIQRQQDEIDKAIRHETTGLPLDLDYQEVPGLSNEVIAKLNDHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++K+
Sbjct: 602 SRISGMTPAAISILLVHLKR 621


>gi|229000272|ref|ZP_04159841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock3-17]
 gi|228759604|gb|EEM08581.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock3-17]
          Length = 629

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCKGVITQSGAEYTAETVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  DE+   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDEKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKLRLESIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   +    + E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGI--RASDLLRRPEMTYEHIRILAPSEVEIHDEIAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|114565206|ref|YP_752720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella frigidimarina NCIMB 400]
 gi|122298231|sp|Q07VT3|MNMG_SHEFN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114336499|gb|ABI73881.1| glucose inhibited division protein A [Shewanella frigidimarina
           NCIMB 400]
          Length = 629

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/615 (46%), Positives = 384/615 (62%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q  V 
Sbjct: 67  GGAMATATDFAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQHILQNQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +L N 
Sbjct: 127 DLVVENDKVIGVVTQMGLAFEAPAIVLTTGTFLSGKIHIGMQNYSGGRAGDPPAIALANR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             + +   GRLKTGTP R+D  TI + +  +Q  D  L   SF+ D   + RQ+ C IT 
Sbjct: 187 LRELNIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFIGDVSQHPRQVSCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL+T+ 
Sbjct: 247 TNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGLSTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I GL+
Sbjct: 307 IYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++ +       C  R ++Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGMNASLQVQGKTAWCPRRDEAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAEYR+ LR DNAD RLT  G +LG + ++R + F    +        L+S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDKRWESFIAKRESIELELQRLRSQWVH 486

Query: 484 -TSKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
             S  L   +           ++E  L  P+     L S+             E++QI+ 
Sbjct: 487 PNSALLGVLNPELNTPISREASFEDLLRRPEMDYAKLMSLEGFGPGLDDQQAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYSGYIQRQQDEIDKAIRHENSLLPLDLDYQEVPGLSNEVIAKLNNHKPDTVGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 ITPAAISILLVHLKK 621


>gi|85375438|ref|YP_459500.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erythrobacter litoralis HTCC2594]
 gi|122543371|sp|Q2N6I8|MNMG_ERYLH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|84788521|gb|ABC64703.1| glucose inhibited division protein A [Erythrobacter litoralis
           HTCC2594]
          Length = 621

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/610 (45%), Positives = 393/610 (64%), Gaps = 2/610 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++V+GGGHAG EAA  AA++G  TAL++   + IG+MSCNPAIGGLGKGHLVRE+DA 
Sbjct: 8   FDILVVGGGHAGVEAACAAARMGVRTALVSFDPARIGAMSCNPAIGGLGKGHLVREVDAF 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG++ R ADAA I +R+LN  KG AV GPR QADR+L+  A+Q  + +QENL V+ GEVA
Sbjct: 68  DGVIARAADAAAIHYRMLNRSKGSAVWGPRVQADRKLFHAAVQAIVATQENLTVVPGEVA 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ I + D + +    V+L TGTFL G ++ G+  +  GR+G+  ++ L   
Sbjct: 128 ALRFEGARVTGIELADGTALSGQAVILCTGTFLGGKLYRGEEIMVGGRIGEDSASRLAEQ 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
               +    RLKTGTP RLDG+TI W   E+Q +D      S +T   +N +I CGITRT
Sbjct: 188 MYGLELPMARLKTGTPPRLDGRTIDWAALEEQPSDGEDWTLSALTPARSNPEIFCGITRT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H II  N+  S ++SG I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+T +V
Sbjct: 248 NARAHDIIRANLNRSPLFSGAIDAQGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLDTHLV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP ++Q   +R + GL  V ++ PGYA+EYD+I P+ L   L  K + GL+ 
Sbjct: 308 YPNGISTSLPVDVQLGMLRAMDGLFHVELVEPGYAVEYDHIEPRALTSGLRLKDVEGLYC 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+A      +     R  SY+ VM+DDLT  GV EPYR
Sbjct: 368 AGQINGTTGYEEAAAQGLIAGLNAACVVLDREAPALDRATSYMAVMVDDLTLHGVSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M T+RAEYR+ LR +NA  RLTP+ ++LGC+G  R + FA+  ++   L + L S   ++
Sbjct: 428 MLTARAEYRLRLRANNATARLTPLAIELGCVGGERAEWFARREEKRARLDAALDSQA-SA 486

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           K +    +  K D       E+L +P     +L  + P+     + +   L  +++YA Y
Sbjct: 487 KQMQDLGLPVKSDSGKMALREWLRFPTIDFPDLAPLVPEV-DTGTELAAELAEDAAYAPY 545

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  E +E+K  E   +  DF ++ +P LS+E+ E+L+  +P  L  A ++ G+TPAA
Sbjct: 546 LARQDAELRELKANEAITLAADFPFAEVPGLSSEMVERLTAARPETLAAAGRVPGVTPAA 605

Query: 606 LNLLLIYIKK 615
           L  +L++ +K
Sbjct: 606 LAAVLVHTRK 615


>gi|45659306|ref|YP_003392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59797795|sp|Q72LR0|MNMG_LEPIC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|45602552|gb|AAS72029.1| glucose inhibited division protein A [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 635

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/622 (45%), Positives = 388/622 (62%), Gaps = 23/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE+DAL
Sbjct: 14  FDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDAL 73

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q  V 
Sbjct: 74  GGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVE 133

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     L  S
Sbjct: 134 ELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKS 193

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C IT T
Sbjct: 194 LAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCFITYT 253

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  T  +
Sbjct: 254 NAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEI 313

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI GL+ 
Sbjct: 314 YLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYH 373

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV +PYR
Sbjct: 374 AGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYR 433

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL---- 481
           MFTSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +    
Sbjct: 434 MFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQIPLKP 493

Query: 482 ------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                 +L  K +++     K D        FL  P+  I+++  + P+   +S L    
Sbjct: 494 SDKFQNLLDQKGITNYKFGMKLDS-------FLKRPEIKIKDIEFMIPEVSSWSDLEKSI 546

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNL 592
           L++E  Y  Y  R++   + I+++ K L   IP+D +Y  +  L  E  +KL   KP  L
Sbjct: 547 LEMEIKYEGYIKREL---ETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTL 603

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            +AS+I G+ P+ ++L+L +IK
Sbjct: 604 EKASQISGVDPSDVDLILYHIK 625


>gi|255319490|ref|ZP_05360704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SK82]
 gi|262378486|ref|ZP_06071643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SH164]
 gi|255303430|gb|EET82633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SK82]
 gi|262299771|gb|EEY87683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SH164]
          Length = 626

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 289/617 (46%), Positives = 392/617 (63%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRILYKAAIRNVLENQTNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPTMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +YIGV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYIGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++ +   K  +A + L  P+ + + +  +     + +  V ++++I 
Sbjct: 485 AAPNNPMGKKFVEMTGQDLSKESSAIDLLKRPNVTFEQIAELTDS--EVTQQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETRIPADFNYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ L++I I+KN
Sbjct: 603 GVTPAAVQLIMITIRKN 619


>gi|167587941|ref|ZP_02380329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ubonensis Bu]
          Length = 656

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/625 (45%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + +L + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVTLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+     + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGVNAGLYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPADEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P+  DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQANEIERNDANENTRLPEGIDYREVRGLSFEVSQKLNQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|152977682|ref|YP_001377199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189039328|sp|A7GVP6|MNMG_BACCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152026434|gb|ABS24204.1| glucose inhibited division protein A [Bacillus cytotoxicus NVH
           391-98]
          Length = 629

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 399/619 (64%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSNTIDYSKTEIQPGDDQPRAFSFETTKFILDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I +N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDKNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +R+++  ++    ++ L+ +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIPEERYERYSQKKEQIEQEKARLEGIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGI--RASDLLRRPEMTYEHIRLLAPSELEINDEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKEVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|78064752|ref|YP_367521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia sp. 383]
 gi|123569642|sp|Q39KY9|MNMG_BURS3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77965497|gb|ABB06877.1| Glucose-inhibited division protein A subfamily [Burkholderia sp.
           383]
          Length = 656

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 286/625 (45%), Positives = 388/625 (62%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + +  +Q  D   +P FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSQLTEQPGDLDPVPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDTRWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSS------ 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +       
Sbjct: 487 TPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCGLKGGECGPAEPLADDPVLLE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|91785986|ref|YP_546938.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Polaromonas sp. JS666]
 gi|123165597|sp|Q12HF2|MNMG_POLSJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91695211|gb|ABE42040.1| glucose inhibited division protein A [Polaromonas sp. JS666]
          Length = 673

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 291/648 (44%), Positives = 391/648 (60%), Gaps = 32/648 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 9   QEFDVIVVGGGHAGTEAALASARMGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVD 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 69  AMGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQA 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 129 VDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 188

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIP-FSFMTDKITN- 235
           +   +     GRLKTGTP R+DG+TI + K  +Q  D         +P FSFM   I + 
Sbjct: 189 SRLKELKLPQGRLKTGTPPRIDGRTIDFSKCIEQPGDGMPGGTAGPVPVFSFMGGAIPHP 248

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQIFL
Sbjct: 249 QQMPCWITHTNERTHEIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQIFL 308

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL T  +YPNGIST+LP +IQ++ +R++ G+E  +I+RPGYAIEYDY +P+ L  T 
Sbjct: 309 EPEGLTTHEIYPNGISTSLPFDIQYELVRSMAGMENAHILRPGYAIEYDYFDPRALKTTF 368

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI--------CFSRTDSY 407
           ET+ I GLF AGQINGTTGYEEAAAQG+ AGIN+A +   L  +           R ++Y
Sbjct: 369 ETRAIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQCRALGGLPNDHGGAWLPRRDEAY 428

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ 
Sbjct: 429 LGVLVDDLITKGVTEPYRMFTSRAEYRLMLREDNADMRLTEKGRELGLVDDARWDAFSRK 488

Query: 468 IQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--- 521
               +     L+SL +   NL    +  +  K   +     + L  PD +   L S+   
Sbjct: 489 RDAVSRETERLRSLWVNPHNLPLAEAERVLGKSIEREYNLLDLLRRPDVNYAGLMSLEEG 548

Query: 522 ----------CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
                        +   +  VIE+++I + YA Y   Q  E +     E   +P D DY 
Sbjct: 549 KYANPELAAEAAASDDLAKSVIEQIEITAKYAGYIDLQKTEVERAAHYENLKLPTDLDYL 608

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + ALS E ++ L+  +P  L  AS+I G+TPA ++LLL+++KKN  K
Sbjct: 609 QVSALSFEARQTLARHRPETLGMASRISGITPATVSLLLVHLKKNLWK 656


>gi|57651105|ref|YP_187523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus COL]
 gi|151222823|ref|YP_001333645.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161353516|ref|YP_501497.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|161510920|ref|YP_001576579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|162138569|ref|YP_495279.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|258451370|ref|ZP_05699401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5948]
 gi|262049466|ref|ZP_06022338.1| glucose-inhibited division protein A [Staphylococcus aureus D30]
 gi|262051897|ref|ZP_06024112.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|282920716|ref|ZP_06328435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9765]
 gi|284023034|ref|ZP_06377432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 132]
 gi|294849825|ref|ZP_06790565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9754]
 gi|71152073|sp|Q5HCI4|MNMG_STAAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|172049080|sp|A6QKK1|MNMG_STAAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039363|sp|A8YYS0|MNMG_STAAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831559|sp|Q2FDE9|MNMG_STAA3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831560|sp|Q2FUQ3|MNMG_STAA8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57285291|gb|AAW37385.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus COL]
 gi|150375623|dbj|BAF68883.1| glucose-inhibited division protein A [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160369729|gb|ABX30700.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257860900|gb|EEV83717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5948]
 gi|259160224|gb|EEW45253.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|259162463|gb|EEW47033.1| glucose-inhibited division protein A [Staphylococcus aureus D30]
 gi|282594124|gb|EFB99112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9765]
 gi|294823373|gb|EFG39802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9754]
 gi|315197915|gb|EFU28248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141414|gb|EFW33257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144397|gb|EFW36162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329731594|gb|EGG67954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 625

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 396/621 (63%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K    T    +Q G +R      A + L  P+ +   +  +  +  + ++ V E+++I
Sbjct: 483 --KPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILELLEEEHQLNADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ PA +++LLIY+++  ++
Sbjct: 601 SGVNPADISILLIYLEQGKLQ 621


>gi|24217058|ref|NP_714539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Lai str. 56601]
 gi|59797872|sp|Q8EY59|MNMG_LEPIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24198471|gb|AAN51557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 635

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/622 (45%), Positives = 387/622 (62%), Gaps = 23/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE+DAL
Sbjct: 14  FDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDAL 73

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q  V 
Sbjct: 74  GGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVE 133

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +       I    V+LTTGTFL  ++HIG  +   GRM +     L  S
Sbjct: 134 ELIIENDQVIGVRTGRGFEIFTDHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKS 193

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C IT T
Sbjct: 194 LAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCFITYT 253

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  T  +
Sbjct: 254 NAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEI 313

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI GL+ 
Sbjct: 314 YLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYH 373

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV +PYR
Sbjct: 374 AGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYR 433

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL---- 481
           MFTSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +    
Sbjct: 434 MFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQIPLKP 493

Query: 482 ------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                 +L  K +++     K D        FL  P+  I+++  + P+   +S L    
Sbjct: 494 SDKFQNLLDQKGITNYKFGMKLDS-------FLKRPEIKIKDIEFMIPEVSSWSDLEKSI 546

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNL 592
           L++E  Y  Y  R++   + I+++ K L   IP+D +Y  +  L  E  +KL   KP  L
Sbjct: 547 LEMEIKYEGYIKREL---ETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTL 603

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            +AS+I G+ P+ ++L+L +IK
Sbjct: 604 EKASQISGVDPSDVDLILYHIK 625


>gi|228994202|ref|ZP_04154102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus pseudomycoides DSM 12442]
 gi|228765654|gb|EEM14308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus pseudomycoides DSM 12442]
          Length = 629

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  DE+   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDEKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKLRLESIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +      + S   S  +DG    A + L  P+ + +++  + P   +    + E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGI--RASDLLRRPEMTYEHIRILAPSEVEIHDEIAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|190569302|ref|ZP_03022196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis Tsiankovskii-I]
 gi|190559609|gb|EDV13600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis Tsiankovskii-I]
          Length = 629

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/622 (45%), Positives = 392/622 (63%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGP VR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPTVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                    +N+  + +   +DG    A + L  P+ + +++  + P   + S  V E++
Sbjct: 487 PRPEVQELIRNIGGSEL---KDGI--RASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS
Sbjct: 542 EIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 602 RISGVNPADISILLVYIEQGKI 623


>gi|237756701|ref|ZP_04585204.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691140|gb|EEP60245.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 620

 Score =  541 bits (1395), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/624 (47%), Positives = 389/624 (62%), Gaps = 30/624 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAG E A  +AKLGA TALIT     IG M CNP+IGG+ KG +VRE+DA
Sbjct: 6   EYDVVVIGGGHAGIETALASAKLGAKTALITIDKEKIGLMPCNPSIGGIAKGIVVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D  GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI+ EV
Sbjct: 66  LGGEMAKAIDQTGIQFKVLNTRKGPAVRSPRAQADKEEYRRYMVNKTNNTENLTVIEDEV 125

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   KN +  ++      I+   VV+TTGTFL G+IHIG  + PAGRM + PS  L
Sbjct: 126 IDIVLKENKNEVDGVITDKGLKIKTKAVVVTTGTFLNGLIHIGDKRFPAGRMEEKPSTKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------TNR 236
              + +  F+  R KTGTPARLD  TI +   E+   D     FSF T+           
Sbjct: 186 PEFYKRAGFELFRFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWFKEKD 245

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           QI C IT T  ETHRII EN+  +A+Y G I   GPRYCPSIEDKIV+F  ++ H ++LE
Sbjct: 246 QIPCYITYTTPETHRIIKENLHRTALYGGAITGIGPRYCPSIEDKIVKFEGKDRHTVWLE 305

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PE  +   +YPNG+ST+LPEEIQ Q  R+IPGLE V +++P YAIEYD + P EL+PTLE
Sbjct: 306 PETRDGISIYPNGLSTSLPEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELYPTLE 365

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDL 415
           TK+I GL+ AG  NGTTGYEEAA QG+VAGIN+A R   K +     R ++YIGVMIDDL
Sbjct: 366 TKRIRGLYHAGNFNGTTGYEEAAGQGIVAGINAALRALGKNEPFIIKRDEAYIGVMIDDL 425

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T+KGV+EPYR+FTSR+EYR+ LR DNA  RL      +G + E          +EY F++
Sbjct: 426 TTKGVIEPYRLFTSRSEYRLHLRQDNAILRLYQKAYNIGMLNE----------EEYKFVK 475

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTA-YEFLSYPDFSIQNLFSI---CPDARKFSSL 531
              + +      +++   +F +DG  + + + +L  P+  IQ L  I    P+    S  
Sbjct: 476 ETEEEI---RNWINTYKETFIKDGDKKVSIFTYLQKPEVDIQKLKEIGIAVPE----SDY 528

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E ++I   Y  Y  R+    +++K+ E   IP+D DYS +  L  E+ +KL+  KP  
Sbjct: 529 IQEEIEINVKYDGYLEREEKLNEKMKYLEGIKIPEDIDYSQVAGLRKEIVQKLTKFKPMT 588

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS++EG+TPAA+  LL++I+K
Sbjct: 589 LGQASRLEGITPAAITALLVHIEK 612


>gi|268529770|ref|XP_002630011.1| Hypothetical protein CBG13376 [Caenorhabditis briggsae]
 gi|187028709|emb|CAP32236.1| hypothetical protein CBG_13376 [Caenorhabditis briggsae AF16]
          Length = 636

 Score =  541 bits (1395), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/620 (45%), Positives = 397/620 (64%), Gaps = 25/620 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCE+AA +A+ G+ T L+T    TIG MSCNP+ GG+GKGHL+RE+DALD
Sbjct: 18  DVIVIGGGHAGCESAAASARCGSRTILVTQNKKTIGEMSCNPSFGGIGKGHLIREVDALD 77

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL GR+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S E L+V++GEVA 
Sbjct: 78  GLCGRICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKKHMQNEIFSTEKLEVLEGEVAE 137

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + + +  + M + ++I    VV+TTGTFLR  I+ G    PAGR+G+  S+ L  SF
Sbjct: 138 LLVKNDRVVGVKMANETVISTKCVVITTGTFLRAQIYQGMSVWPAGRIGEKSSDKLSESF 197

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGIT 243
           +K  F+ GRL+TGTP RL   +I + K EK   D++ IPFSF+TD I      Q+   + 
Sbjct: 198 LKLGFELGRLRTGTPPRLMKDSIDFSKFEKVEPDKKPIPFSFLTDDIWIKYQDQLPTYLG 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ET RI  EN+  +   + +  S  PRYCPS E K++RF     H++FLE EGL++ 
Sbjct: 258 HTNEETCRIGQENMHENWQVASETTS--PRYCPSFESKLLRFPNLK-HRLFLEHEGLDSP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YP G+S     E+Q Q  R IPGLE V I +PGY ++YD++NPK+L  +LET+++ G+
Sbjct: 315 HIYPQGMSMTFKPEVQLQIFRAIPGLENVEIFQPGYGVQYDFVNPKQLKKSLETQRVEGM 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG++AGIN++ ++ K   +  SRT++YIGV+IDDLTS G  EP
Sbjct: 375 FLAGQINGTTGYEEAAAQGVIAGINASARARKEPAMEISRTEAYIGVLIDDLTSLGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAE+R+ LRPDNAD RLT IG + G IG+ R  +F++        R  L  L  
Sbjct: 435 YRMLTSRAEFRLHLRPDNADIRLTEIGRRHGAIGDTRWNKFSR-------TRKSLDDLTQ 487

Query: 484 TSKNLSSTSISFKQ---------DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            +++L  + + +K+         DGK  +A+E +   D   ++L  +  D       ++E
Sbjct: 488 KTEDLKMSMVKWKRKIPKLTARNDGKVLSAFELVHRYDLGKEDLEMLFEDV---DEEILE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           RL+IE  Y     R   + +EI  E   +IP + D+S++  +S E  EKL   +P NL  
Sbjct: 545 RLKIEGRYRMEHERMKAKKQEIDRESATVIPDNIDFSTMRGMSLECIEKLERARPRNLAA 604

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           A++I G+TP A+ +L+ Y+K
Sbjct: 605 ATRISGITPEAIVVLMRYLK 624


>gi|302690612|ref|XP_003034985.1| hypothetical protein SCHCODRAFT_65522 [Schizophyllum commune H4-8]
 gi|300108681|gb|EFJ00083.1| hypothetical protein SCHCODRAFT_65522 [Schizophyllum commune H4-8]
          Length = 666

 Score =  541 bits (1395), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/621 (47%), Positives = 404/621 (65%), Gaps = 12/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV VIGGGHAGCEAAA AA+ GA T L+T   +TIG MSCNP+IGG+GKG LVRE+DA
Sbjct: 24  TYDVCVIGGGHAGCEAAAGAARTGARTILLTQNPATIGEMSCNPSIGGVGKGTLVREVDA 83

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGRVAD AGIQFR+LN  KG A+  PR Q DR LYR  MQ  + +  NLDV  G V
Sbjct: 84  LGGLMGRVADKAGIQFRILNRSKGMALWSPRAQMDRVLYRTNMQGTLNNYPNLDVRAGSV 143

Query: 125 --------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                      N   + I  + +    +I CS VV+ TGTFL G IHIG  + PAGRMG+
Sbjct: 144 FDLVFDVPPSLNGSPSKIVGVKLDSGDIIPCSQVVICTGTFLGGEIHIGLKRFPAGRMGE 203

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN- 235
           +PS  L  S     F  GRL+TGTPARL   +I + +  +Q  D+   PFSF+   + N 
Sbjct: 204 APSIGLSASLAAAGFKLGRLQTGTPARLAKDSIDFSQMPEQLGDDPPSPFSFLHKAVDNA 263

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +I C +TRT  ETH+II +N+ H +++  + +  GPRYCPS+E KI+RF  +  H ++
Sbjct: 264 DNRISCFMTRTTSETHQIIRDNL-HRSVHIQETRK-GPRYCPSLEAKILRFASKTSHNVW 321

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG ++D++YPNGIS ++PE++Q  F+RTIPGLE   I+RP Y +EYD+I+P+EL  +
Sbjct: 322 LEPEGYDSDLIYPNGISNSMPEDVQEAFVRTIPGLENAKIVRPAYGVEYDFIDPRELGAS 381

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK+I GLFLAGQINGTTGYEEAAAQG+VAGIN+   +     +  SR D +IGVMIDD
Sbjct: 382 LETKRIGGLFLAGQINGTTGYEEAAAQGIVAGINAGLAALGKPPMIISRADGFIGVMIDD 441

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L  KG  EPYRMFTSR+EYR+++R DNAD RLTP+G K+G + + R   + +   +   +
Sbjct: 442 LIVKGAEEPYRMFTSRSEYRMTIRSDNADMRLTPLGRKVGVVDDARWAAYERACGDVEEV 501

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
             +LK   L+ +   S  +S ++DG  R+ ++ L YP+ S  +L    P    +    + 
Sbjct: 502 TRVLKETRLSPQAWVSHGMSVQRDGVYRSGWDLLGYPNVSTADLVGAIPQLANYDPQTLA 561

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R+ I+  Y+ Y  RQ  + K+   +E   +    DY ++  LS+E+KEKL+ ++P  +  
Sbjct: 562 RVDIDGRYSHYISRQEEDLKDFLQDESFTLDPQMDYDAVDGLSSEVKEKLAKVRPATIGA 621

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A ++EG+TP ++ LL+ + ++
Sbjct: 622 ARRMEGITPISIVLLMRHARQ 642


>gi|261856911|ref|YP_003264194.1| glucose inhibited division protein A [Halothiobacillus neapolitanus
           c2]
 gi|261837380|gb|ACX97147.1| glucose inhibited division protein A [Halothiobacillus neapolitanus
           c2]
          Length = 626

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 292/617 (47%), Positives = 392/617 (63%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T LI+H   T+G MSCNPAIGG+GKGHLVREIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAKTLLISHNIETLGQMSCNPAIGGIGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD  GIQFR LN +KGPAVR  R QADR LY+ A+++ + +Q NL + Q  V 
Sbjct: 67  GGAMALAADRGGIQFRTLNARKGPAVRATRAQADRILYKAAIRQMLENQPNLMLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   ++ I  Q        TVVLT GTFL G IHIG      GR GD P+  L + 
Sbjct: 127 DLLLDGERVTGIRTQAGIEFTGKTVVLTAGTFLAGQIHIGMNNYQGGRAGDPPAQRLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D ++I     + Q  D     FSFM   K   +Q+ C IT 
Sbjct: 187 LRELSLGVGRLKTGTPPRIDIRSIDLSVMQVQPGDTPEPVFSFMGSVKDHPQQVNCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T+ 
Sbjct: 247 TNERTHEIIRGGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ  ++R+I G E+  I RPGYAIEYD+ +P+ L PTLET+ I GLF
Sbjct: 307 IYPNGISTSLPFDIQLDYVRSIRGFERAVITRPGYAIEYDFFDPRGLKPTLETRAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +    + +   R ++Y GVMIDDL ++G LEPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLMAGANAAARVLGREPLTLRRDEAYAGVMIDDLITQGTLEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG  LG + E R + F + ++     ++ L +L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADQRLTPIGHALGLVDEARWRAFNEKMEAIAREQARLGALWVH 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESS 541
             +   + +      +   A + L  P+   Q L    S+ P++    + V E+++IE+ 
Sbjct: 487 PDHPDVSRLP-GVISRGVNALDLLRRPEMDYQQLAQVPSLAPES-PLPAAVTEQIEIEAK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E      +E +++P D DYS +  LSNE++ KL   +P  L QA +I G+
Sbjct: 545 YAGYVDRQKDEVSRSVKQETQVLPDDLDYSQIYGLSNEVRSKLETHRPSTLGQAGRIPGV 604

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL +++K+ ++
Sbjct: 605 TPAAISLLQVHLKRRSL 621


>gi|56422028|ref|YP_149346.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Geobacillus kaustophilus HTA426]
 gi|297531686|ref|YP_003672961.1| glucose inhibited division protein A [Geobacillus sp. C56-T3]
 gi|81170543|sp|Q5KU58|MNMG_GEOKA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56381870|dbj|BAD77778.1| glucose-inhibited division protein [Geobacillus kaustophilus
           HTA426]
 gi|297254938|gb|ADI28384.1| glucose inhibited division protein A [Geobacillus sp. C56-T3]
          Length = 629

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDKEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R ++F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQKFLAKKEAIEREKKRLQTVIIK 486

Query: 484 ----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG  R A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PTPKVQEVIREAGGSELKDG-IRAA-DLLRRPEMTYEHIRKLAPADEEIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDAIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|134294225|ref|YP_001117960.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia vietnamiensis G4]
 gi|166222919|sp|A4JA22|MNMG_BURVG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134137382|gb|ABO53125.1| glucose inhibited division protein A [Burkholderia vietnamiensis
           G4]
          Length = 656

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/625 (46%), Positives = 387/625 (61%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + +Q+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     LKS  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFSRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----C------PDARKFSS 530
           T K L    +T++  K      +  E L  P  S   +  +    C       D      
Sbjct: 487 TPKTLPPEEATALLGKPIDHEYSLAELLRRPGISYDGVCGLKGGECGPVEPLADEPVLLG 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P 
Sbjct: 547 QIKEQVEIGIKYQGYIERQANEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNEFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPAA++LL++++K+
Sbjct: 607 TIGQASRISGVTPAAISLLMVHLKR 631


>gi|289664376|ref|ZP_06485957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 634

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/625 (45%), Positives = 388/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   ++G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIESVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                   +E + +  ++ Q        +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIRNGTSEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYSVMVEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G +   R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGHEMGLVDNARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   YA Y  RQ  +    +  E   IP  FDY+ +  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYAVVRGLSIEVRQKLERVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|251778676|ref|ZP_04821596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082991|gb|EES48881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/611 (45%), Positives = 394/611 (64%), Gaps = 3/611 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVIVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N +  I+ ++ ++ R   V+L TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEGNKVIGIITRNGAIFRSKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSGNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKENIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    D +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEDPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G + E R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTEERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 NLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             ++    ++   +  K  + YE +  P+    +L  +  +  + S  + E++ I + Y 
Sbjct: 491 RETNEFLLAVGSAELKKPISFYELIKRPEVDYFSLKDLDMEREELSEDIGEQINIIAKYE 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ ++P ++ QAS+I G++P
Sbjct: 551 GYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIRPISIGQASRISGVSP 610

Query: 604 AALNLLLIYIK 614
           A +++LLIY++
Sbjct: 611 ADISVLLIYLE 621


>gi|330837281|ref|YP_004411922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta coccoides DSM 17374]
 gi|329749184|gb|AEC02540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta coccoides DSM 17374]
          Length = 630

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 395/622 (63%), Gaps = 36/622 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+ IV+GGGHAG EA+   A++G  T L+T    TIG MSCNPAIGGL KG+LVRE+DAL
Sbjct: 3   YEAIVVGGGHAGIEASLALARMGHRTLLVTQSLDTIGRMSCNPAIGGLAKGNLVREVDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + DA  IQFR+LN ++GPAV+ PR QAD+  Y        L++E L+V +G   
Sbjct: 63  GGQMGLLIDATTIQFRILNRRRGPAVQAPRAQADKFSYSR------LAKETLEVQKGLSL 116

Query: 126 GFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
             +T  ++I S        +V +    I   TVV+TTGTF+ G I IG     +GR+G+ 
Sbjct: 117 FMDTVTDLIVSEDGRRVEGVVTERGHRIGARTVVVTTGTFMDGRIFIGDYDASSGRLGEP 176

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            +  L +S  +  FD GRLKTGTPAR+   ++ + + E Q  D  + PFSFMT KI   Q
Sbjct: 177 AAMGLGSSLRRLGFDVGRLKTGTPARVRRSSLDFSRLEVQPGDGAMQPFSFMTGKIHRPQ 236

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           ++C IT T   TH+II +NI  S +Y G I   GPRYCPSIEDK+VRF ER  HQIF+EP
Sbjct: 237 MDCYITWTTDVTHQIIRDNIGRSPLYGGKISGKGPRYCPSIEDKVVRFPERERHQIFVEP 296

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG  T+ +Y NG+S++LPE++Q  FI T+PGLE+  ++RPGYA+EYDY+NP +L P+LET
Sbjct: 297 EGEGTEEMYLNGLSSSLPEDVQTAFIHTLPGLERAEVMRPGYAVEYDYLNPIQLLPSLET 356

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+ GLFLAGQ NGT+GYEEAAAQGL+AGIN+A   +    +  SR+D+YIGV+IDDL +
Sbjct: 357 KKLEGLFLAGQTNGTSGYEEAAAQGLMAGINAALVLSGEKPLILSRSDAYIGVLIDDLVT 416

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG-CIGER--RQKRFAKYIQEYNFL 474
           KG  EPYRMFTSRAEYR++LR D+AD RLTP+    G   GER  R K  A+ I E    
Sbjct: 417 KGTQEPYRMFTSRAEYRLNLRHDDADQRLTPLSHAHGLATGERMERLKEKARAIAE---- 472

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +K+++  S+  S            ++A E L  P+ SI ++ +  P    +   V++
Sbjct: 473 ---VKAILTASRKGS------------QSATEILKRPEVSIADILADVPSLSTYDEAVLQ 517

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++++  Y  Y  RQ  E +     E  LIP  F+Y  +  +SNE +EK   + P +L Q
Sbjct: 518 QVELDVKYEGYILRQEREVERFARLENILIPDGFNYDKVDGISNESREKFKQILPRSLGQ 577

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           A +I G+  + + +L+++I + 
Sbjct: 578 AGRISGVRSSDIAILMVHISQE 599


>gi|330815034|ref|YP_004358739.1| Glucose inhibited division protein A [Burkholderia gladioli BSR3]
 gi|327367427|gb|AEA58783.1| Glucose inhibited division protein A [Burkholderia gladioli BSR3]
          Length = 656

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/626 (46%), Positives = 392/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRSRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL + 
Sbjct: 127 DLIVEGERVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNHTGGRAGDPAAVSLSSR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG++I + K E+Q  D   +P FSF+   ++  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLEEQPGDLDPVPVFSFLGRVEMHPRQMPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLDLVHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKAIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R ++Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDEAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETERLRSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L    +T++  K      +  E L  P  S   +  +    C  A   +      +
Sbjct: 487 TPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYAGVCGLRGGECGPAEPLAEDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P+  DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIEEQIEIGIKYQGYIERQAGEIERNGAHENTRLPEGIDYAEVRGLSFEARQKLNQHRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|124268971|ref|YP_001022975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylibium petroleiphilum PM1]
 gi|205831533|sp|A2SMF1|MNMG_METPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|124261746|gb|ABM96740.1| putative glucose inhibited division protein A [Methylibium
           petroleiphilum PM1]
          Length = 667

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/646 (45%), Positives = 391/646 (60%), Gaps = 33/646 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+EID
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYKAAIRRRLENQPRLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 125 VDDLIVEGDRVIGAVTQVGVRFRSKAVVLTAGTFLDGRIHVGLQNYAAGRAGDPPAQSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
               +     GRLKTGTP R+DG+TI +++  +Q  D   +P FS+M D   + RQ+ C 
Sbjct: 185 ARLKELQLPQGRLKTGTPPRIDGRTIDFERLLEQPGDADPVPVFSYMGDAAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+  TH II      S +++G I+  GPRYCPSIEDK+ RF ++  HQIFLEPEGL+
Sbjct: 245 ITHTSERTHEIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKTSHQIFLEPEGLS 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YPNGIST+LP +IQ   +R++ GLE+ +I+RPGYAIEYDY +P+ L  + ETK I 
Sbjct: 305 THEFYPNGISTSLPFDIQLAALRSMSGLEQAHILRPGYAIEYDYFDPRGLKSSFETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL AG+N+AR+  +LD     R  +Y+GV++DDL +KGV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLFAGVNAARQVQELDAWLPRRDQAYLGVLVDDLITKGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F +     +     LKS 
Sbjct: 425 EPYRMFTSRAEFRLQLREDNADLRLTDAGREMGLVDDERWAAFNRKRDAVSRETERLKST 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYP--DFSIQNLFSICPDARK--------- 527
            + +  L +              Y   + L  P  DF      +    AR+         
Sbjct: 485 WVNAALLPAADAERLVGKALEHEYALVDLLRRPGVDFDAVAEVAQIAHARRSEGRQADDP 544

Query: 528 -----------------FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
                             +  VI++L+  + YA Y  +Q  + +     E   +P+  DY
Sbjct: 545 AAAAWSRAALRNEWGPALADAVIQQLETATKYAGYIDKQNEQVERAAQYEDLKLPESLDY 604

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             + ALS+E+++KL  L+P  L QA+++ G+TPAA++LLLI++KK 
Sbjct: 605 RQVAALSHEVRQKLQALRPETLGQAARVSGVTPAAISLLLIHLKKG 650


>gi|307731470|ref|YP_003908694.1| glucose inhibited division protein A [Burkholderia sp. CCGE1003]
 gi|307586005|gb|ADN59403.1| glucose inhibited division protein A [Burkholderia sp. CCGE1003]
          Length = 652

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/626 (45%), Positives = 388/626 (61%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       D  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQGRDAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
             K LS   +T++  K      +  E L  P  S   + ++    C      +      +
Sbjct: 487 NPKTLSADEATALLGKPIDHEYSLAELLRRPGVSYDGVCALREGTCAAPGPLAEDEVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +  +  E   +P   DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPDGLDYAEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|260549419|ref|ZP_05823638.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter sp. RUH2624]
 gi|260407528|gb|EEX01002.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter sp. RUH2624]
          Length = 626

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/619 (47%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|189220413|ref|YP_001941053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylacidiphilum infernorum V4]
 gi|189187271|gb|ACD84456.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme GidA [Methylacidiphilum infernorum
           V4]
          Length = 623

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 300/632 (47%), Positives = 393/632 (62%), Gaps = 40/632 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EAA   A++G  T L+T    TIG MSCNP+IGG+GKGHLVREID
Sbjct: 9   KKYDVIVVGGGHAGVEAALACARMGCQTLLLTMNLDTIGQMSCNPSIGGIGKGHLVREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG   D  GIQFR+LN+KKG +V+ PR Q D++ Y+  ++       NLD+ Q  
Sbjct: 69  ALGGEMGINTDLTGIQFRMLNLKKGYSVQAPRAQCDKKAYQFRLKAVCERTSNLDLFQAS 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    +++ I  I+ +   +I  S V++TTGTFLRG++H+G+ K   GRMG+S S+SL 
Sbjct: 129 VSDLIVKEDKIKGIITELGIVIHASAVIVTTGTFLRGLLHVGRNKKTGGRMGES-SSSLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-----TDK----IT 234
           +   K+ F+ GRLKTGTP R++GKTI + K   Q  D     FSF      TDK      
Sbjct: 188 DVLRKYGFEVGRLKTGTPPRVNGKTIDFSKCMMQPGDTPPPHFSFALSDLDTDKEGMYTL 247

Query: 235 NR---------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           NR         Q+ C IT TN +TH II EN+  S +Y G+I+  GPRYCPSIEDKIVRF
Sbjct: 248 NRWKEGMFHVEQLACAITYTNAKTHAIIRENLHTSPLYCGEIQGVGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            ++  HQIFLEPEG +T+  Y NG ST+LP E+Q QFI +I GLE   IIRPGYA+EYDY
Sbjct: 308 ADKERHQIFLEPEGRHTEEYYVNGCSTSLPFEVQDQFIHSIEGLEHCQIIRPGYAVEYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
               +++PT+ETK I GLF AGQINGTTGYEEAA+QGL+AGIN+ARK      +   R  
Sbjct: 368 CPATQIYPTMETKTIEGLFFAGQINGTTGYEEAASQGLIAGINAARKIQNNPPLILGRDQ 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +YIGV+IDDLT+K + EPYR+FTSRAE+R+ LR DNAD RLT IG  LG   + R  R  
Sbjct: 428 AYIGVLIDDLTTKPIREPYRIFTSRAEHRLVLRQDNADLRLTEIGYSLGLASKARLMR-- 485

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
             +QE    + L++      +      +S +         E L  P++S  +L       
Sbjct: 486 --VQEK---KRLIEETFQKIRQYRLNGLSLE---------EMLKRPEYSWSHLPLEFQGV 531

Query: 526 RKFSSLVIERLQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            K  +L IE    E  YA Y  R+  +  K  K EE  +IP + DY  +P L  E +EKL
Sbjct: 532 PKDVALHIE---CEIKYAGYIARERELILKRQKLEES-IIPANIDYEKIPGLKQEAREKL 587

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           S +KP    QAS+I G+ P  + +++I+ KKN
Sbjct: 588 SRMKPLTFGQASRIPGVNPTDVAIIMIWAKKN 619


>gi|91785745|ref|YP_560951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia xenovorans LB400]
 gi|123358350|sp|Q13SP0|MNMG_BURXL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91689699|gb|ABE32899.1| Glucose-inhibited division protein A subfamily [Burkholderia
           xenovorans LB400]
          Length = 652

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/626 (45%), Positives = 391/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRGRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNARTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK ISGL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQGKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVI- 533
             K LS   +T++  K      +  + L  P  S   + ++       P+      +++ 
Sbjct: 487 NPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPETLAEDDVLLA 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|154298844|ref|XP_001549843.1| hypothetical protein BC1G_11669 [Botryotinia fuckeliana B05.10]
 gi|150857574|gb|EDN32766.1| hypothetical protein BC1G_11669 [Botryotinia fuckeliana B05.10]
          Length = 659

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/618 (44%), Positives = 384/618 (62%), Gaps = 10/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDV+VIGGGHAG EA A +A+ GA TALIT K   IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  TRPYDVVVIGGGHAGAEACAGSARSGARTALITPKLENIGVCSCNPSFGGIGKGTMLREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR+ D AG+QF+VLN KKGPAV GPR Q DR+LY+  M+ E+ +  NL ++ G
Sbjct: 95  DALDGVAGRIIDKAGVQFKVLNRKKGPAVWGPRAQIDRDLYKKHMREELEAYPNLSIVTG 154

Query: 123 EVAGF-------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            VA           +   I+ + ++   +I    VV+TTGTFL G IHIG    PAGRMG
Sbjct: 155 SVADIIVSKEEGEAQSGKITGVRLESGEIIPTKQVVITTGTFLGGEIHIGLECYPAGRMG 214

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S     F  GRLKTGTP RL   +I +     Q  D+   PFS++ + ++ 
Sbjct: 215 EAATFGLSKSLKDAGFTLGRLKTGTPPRLAKGSIDFKNLTVQPGDQPPTPFSYLNETVSV 274

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H ++  N+  S      +K  GPRYCPS+E K++RF +++ H ++
Sbjct: 275 QDQLLCHATYTNEASHAVVRANLDKSIHIRETVK--GPRYCPSLESKVIRFSDKDRHIVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG ++DV+YPNGIS  +P E Q Q ++TIPGLE V +  PGY +EYDY++P+ L  T
Sbjct: 333 LEPEGFDSDVIYPNGISMTIPAEAQEQLLKTIPGLENVTMTAPGYGVEYDYVDPRSLKAT 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S  L  +  SR+D YIG+MIDD
Sbjct: 393 LETKAIQGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSLPQLTLSRSDGYIGIMIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +GE+R   F   + +   L
Sbjct: 453 LITKGVSEPYRMFTSRSEYRMSARADNADLRLTEKGRVAGVVGEKRWSVFNDEVAQMGGL 512

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +  L++   ++    +       D   R A + L   D ++ +L +  P+   ++  + +
Sbjct: 513 KLALENSKFSAPVWINDGFKVSNDSTMRNALDILRIRDVTMNDLSTRVPEILTYTQRIRD 572

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R+ IE+ YA Y  +Q    +  + +E   +P D DY S+  +S   K  L I +P ++ Q
Sbjct: 573 RVGIEAVYAPYVIQQKAAQRVFQKDEMLKLPVDLDYDSIHGISMHEKSVLKITRPESVGQ 632

Query: 595 ASKIEGMTPAALNLLLIY 612
           A +IEGMTP+    LL +
Sbjct: 633 ARRIEGMTPSGCLRLLAF 650


>gi|226941925|ref|YP_002796999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Laribacter hongkongensis HLHK9]
 gi|254811513|sp|C1D5H3|MNMG_LARHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226716852|gb|ACO75990.1| GidA [Laribacter hongkongensis HLHK9]
          Length = 628

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 387/622 (62%), Gaps = 5/622 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G ST L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGRSTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR LN  KGPAVR  R QADR  Y+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDMGGIQFRTLNASKGPAVRATRAQADRVRYKAAIRHMLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + ++  + Q        TVVLT GTFL G IHIG      GR GD  +++L   
Sbjct: 127 DLVMQGDRVAGAITQAGITFMSRTVVLTAGTFLSGKIHIGLENYTGGRAGDPAASTLGAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
              +    GRLKTGTP R+DG++I +   E Q  D+    FSF   + +  +Q+ C +T 
Sbjct: 187 LRDYALPVGRLKTGTPPRIDGRSIDFSVLEMQPGDDPAPVFSFRGSRDMHPQQLPCWVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TNL TH II      S +++G I+  GPRYCPSIEDKI RF +R+ HQIFLEPEGL+T  
Sbjct: 247 TNLRTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADRDSHQIFLEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG+ST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  TLE+++++GLF
Sbjct: 307 IYPNGVSTSLPFDIQLAALRSMKGLENAHILRPGYAIEYDYFDPRALRHTLESRRVAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R ++Y+GV++DDLT+ GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARAARDEEGWYPGREEAYLGVLVDDLTTLGVNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT  G +LG +G+ +   F +        R  LKS  + 
Sbjct: 427 RMFTSRAEFRLQLREDNADLRLTETGRRLGLVGDAQWDIFCRKRDAVAAERERLKSTWVN 486

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
            + +S               Y   E L  P      L ++        S  V E+++I+ 
Sbjct: 487 PRLVSEEDARRVLGQPVEREYSLEELLRRPGVDYATLATLPAFGGEALSGAVAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    +  E   IP  FD+S++  LS E+++KL++ +P  L QAS+I G
Sbjct: 547 KYQGYIDRQHEEVARREATEHVRIPAAFDFSAVSGLSKEVQQKLALHRPETLGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           +TPAA++LL +Y+K+     +E
Sbjct: 607 VTPAAISLLHVYLKRAGAPKSE 628


>gi|261420901|ref|YP_003254583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus sp. Y412MC61]
 gi|319768572|ref|YP_004134073.1| glucose inhibited division protein A [Geobacillus sp. Y412MC52]
 gi|261377358|gb|ACX80101.1| glucose inhibited division protein A [Geobacillus sp. Y412MC61]
 gi|317113438|gb|ADU95930.1| glucose inhibited division protein A [Geobacillus sp. Y412MC52]
          Length = 629

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDKEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R ++F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQKFLAKKEAIEREKKRLQTVIIK 486

Query: 484 ----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG  R A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PTPKVQEVIREAGGSELKDG-IRAA-DLLRRPEMTYEHIRKLAPADEEIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY  +  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDGIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|149911787|ref|ZP_01900391.1| glucose-inhibited division protein A [Moritella sp. PE36]
 gi|149805133|gb|EDM65155.1| glucose-inhibited division protein A [Moritella sp. PE36]
          Length = 627

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 297/621 (47%), Positives = 398/621 (64%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  ++VIV+GGGHAG EAAA AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   HEQFEVIVVGGGHAGTEAAAAAARMGRKTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+MG+  D  GIQFR LN  KGPAVR  R QADR LY+ A+++++ +Q+NL + Q 
Sbjct: 64  DALGGIMGQATDLGGIQFRTLNSSKGPAVRATRAQADRLLYKSAVRQKLENQQNLTIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  ++ Q     R  +VVLT GTFL G+IHIG    P GR GD  S SL
Sbjct: 124 SVDDLIIENDRVVGVMTQAGLSFRAKSVVLTVGTFLDGLIHIGLQNYPGGRAGDPASVSL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
                +    TGRLKTGTP R+DG+TI +   E+Q  D+    FSF+ + K   +QI C 
Sbjct: 184 AARLRELPIRTGRLKTGTPPRIDGRTIDFSVMEEQHGDKPTPVFSFIGSRKDHPQQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL 
Sbjct: 244 ITHTNNKTHDVIRSGMDRSPMYTGVIEGIGPRYCPSIEDKITRFADKESHQIFIEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP ++Q   +R+I GLE  +I RPGYAIEYDY +P++L  TLE+K I 
Sbjct: 304 THEVYPNGISTSLPYDVQVDLVRSIRGLENAHITRPGYAIEYDYFDPRDLKLTLESKFIE 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AG+N+AR + + D     R  +Y+GV++DDL + G  
Sbjct: 364 GLFLAGQINGTTGYEEAAAQGLLAGLNAARTAREEDTWHPRRDQAYLGVLVDDLATLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  L+S 
Sbjct: 424 EPYRMFTSRAEYRLILREDNADARLTEQGRELGLVDDHRWQVFNEKMEAIELEQQRLRST 483

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQ 537
            +      +  I+    K   +  T  + L  P+ +   L +I     K       E+++
Sbjct: 484 WINPNKAFADKINAILAKPLSREHTLEDLLRRPEVTYNALMTIEELGPKLEHESAAEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  E ++    E  L+P D DY+ +  LSNE+  KL  +KP  +  AS+
Sbjct: 544 ITIKYEGYINRQKAEIEKQLRHENTLLPTDLDYAKIKGLSNEVIAKLVDVKPQTIGMASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA+++LLIY+KK  +
Sbjct: 604 ISGITPAAISILLIYLKKQNL 624


>gi|255003397|ref|ZP_05278361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Puerto Rico]
          Length = 630

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/590 (46%), Positives = 372/590 (63%), Gaps = 7/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 32  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 91

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 92  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 151

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 152 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 211

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 212 RSSIDWSATAEQKGDPVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 271

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG +T+ P ++Q + +R+
Sbjct: 272 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNG-ATSCPIDVQLEMLRS 330

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 331 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 390

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 391 GANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADM 450

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 451 RLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKTA 510

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 511 FELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 570

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 571 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 620


>gi|255004518|ref|ZP_05279319.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Virginia]
          Length = 627

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/590 (46%), Positives = 372/590 (63%), Gaps = 7/590 (1%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGPA
Sbjct: 29  TLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGPA 88

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIR 146
           V GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++ 
Sbjct: 89  VWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVLH 148

Query: 147 CSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+D
Sbjct: 149 TRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRID 208

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  + 
Sbjct: 209 RSSIDWSATAEQKGDPVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCAS 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG +T+ P ++Q + +R+
Sbjct: 269 LVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNG-ATSCPIDVQLEMLRS 327

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+VA
Sbjct: 328 IRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIVA 387

Query: 386 GINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           G N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 388 GANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADM 447

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +TA
Sbjct: 448 RLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKTA 507

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           +E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   I
Sbjct: 508 FELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENASI 567

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 568 PADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 617


>gi|294501986|ref|YP_003565686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium QM B1551]
 gi|295707337|ref|YP_003600412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium DSM 319]
 gi|294351923|gb|ADE72252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium QM B1551]
 gi|294804996|gb|ADF42062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium DSM 319]
          Length = 629

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/619 (44%), Positives = 390/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  +A++GA T  +T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGCEAALASARMGAKTLTLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ENL ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHEMKKTLENEENLTLMQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  + + +V Q  ++ +  TVV+TTGTFLRG I +G+LK  +G     P+  L  
Sbjct: 127 EQLIVEDGVCTGVVTQTGAVYKAKTVVITTGTFLRGEIILGELKYSSGPNNQQPAIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   D  R KTGTP R++  TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGLDMVRFKTGTPPRVNSSTIDYSKTEIQPGDDVPRAFSYETTQYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +TH+II +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEQTHQIIDDNLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q Q + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEHVQRQMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ R++ + + +   R+D+YIGV++DDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLLAGINAGRRALEQEEVILGRSDAYIGVLVDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG +LG I + R  +F +   E    +  L S ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGRELGLISDERYAKFEQKKAEIEQEKKRLFSFIIK 486

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   I  K+ G +       A + L  P+ +  ++  + P        V E+++I+
Sbjct: 487 PNEAVQQLI--KEAGGSELKDGIRATDLLRRPEMTYTHIHQLAPADETVDPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP   DY ++  L+ E ++KL+ ++P  + QAS+I 
Sbjct: 545 VKYEGYIQKSLQQVERLKKLENKKIPDYIDYDAINGLATEARQKLNQVRPLTVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGRI 623


>gi|238899345|ref|YP_002925028.1| glucose-inhibited cell-division protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495847|sp|C4K911|MNMG_HAMD5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|229467106|gb|ACQ68880.1| glucose-inhibited cell-division protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 627

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/614 (47%), Positives = 394/614 (64%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGH+G EAA  +A++G  T L+TH   T+G +SCNPAIGG+GKG LV+EIDAL
Sbjct: 7   FDVIVIGGGHSGTEAAMASARMGCKTLLLTHNIDTLGQLSCNPAIGGIGKGQLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG  AD A IQ R+LN  KGPAV+  R Q DR +YR  ++  + +Q NL + Q  V 
Sbjct: 67  GGLMGMAADKASIQSRILNASKGPAVKSTRVQLDRTVYRKVIRSALENQTNLSIFQQPVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + +++   V +        ++VLT GTFL G IH+G     AGR GD+ S SL + 
Sbjct: 127 DLILKNDLVVGAVTKMGLKFHAKSIVLTVGTFLDGKIHLGLENYSAGRAGDTASISLASQ 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             K     GRLKTGTP R+D ++I +   + Q  D  L  FSF+  +     Q  C IT 
Sbjct: 187 LRKLPLRIGRLKTGTPPRIDARSINFKNLKIQLGDTPLPLFSFLGRQHPPLTQKPCHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II +N++ S +Y G I   GPRYCPSIEDKI+RF +R+ HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEIIQKNLERSPMYRGIIDGIGPRYCPSIEDKIIRFSDRSAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G++   I+RPGYAIEYDY +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQLKIVRSIQGMKNAFIVRPGYAIEYDYFDPRDLKPTLESKHIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +   +     R  +YIGV++DDLT+ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLARGEEGWFPLRNQAYIGVLVDDLTTLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + E R  RF + ++     +  L+S+ + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEIGYQLGLVDENRWCRFNQKVELIEQEKQRLRSIWIK 486

Query: 485 SKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSY 542
             + +      K      T  E  L  P+ +   L S+ P      ++    +++I+  Y
Sbjct: 487 PNSDNQIDQIIKSPLSRETNGEDLLRRPEVNYSLLTSLKPFLPSLENNEAGMQVEIQIKY 546

Query: 543 AAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
             Y  RQ  E AK+++  E  L+P  FDYS +  LSNE+  KL+  KP +L QAS+I G+
Sbjct: 547 EGYIVRQKEEIAKQLR-NENTLLPLSFDYSLISGLSNEVVSKLNDHKPISLGQASRISGI 605

Query: 602 TPAALNLLLIYIKK 615
           TPAA+++LL+++KK
Sbjct: 606 TPAAISILLVWLKK 619


>gi|239501427|ref|ZP_04660737.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB900]
          Length = 626

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|212640676|ref|YP_002317196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anoxybacillus flavithermus WK1]
 gi|259495844|sp|B7GMV9|MNMG_ANOFW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|212562156|gb|ACJ35211.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme, GidA [Anoxybacillus flavithermus
           WK1]
          Length = 638

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/619 (46%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GAST +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 16  SYDVIVVGAGHAGCEAALAAARMGASTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 76  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQQEMKKTLENQENLTLLQGKV 135

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 136 EKLIVEDGVCKGVITHTGARYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 195

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++  TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 196 HLEELGFELVRFKTGTPPRVNSHTIDYSKTEIQPGDDVPRAFSYETKQYITDQLPCWLTY 255

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 256 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRHTQE 315

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 316 VYVQGLSTSLPEHIQRQMLATIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKVVQRLY 375

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A K+   + +  SR+++YIGV+IDDL +KG  EPY
Sbjct: 376 TAGQINGTSGYEEAAGQGLIAGINAACKALGKEELILSRSEAYIGVLIDDLVTKGTNEPY 435

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+ TSRAEYR+ LR DNAD RLT IG K+G I + R ++F    +     +  LKS ++ 
Sbjct: 436 RLLTSRAEYRLLLRHDNADLRLTEIGYKIGLISQERYEKFVAKKEAIEAEKKRLKSYIIK 495

Query: 484 ----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG  R A + L  P+ + +++  I P  +     V E+++I+
Sbjct: 496 PTPQVQQLIRDVGGSELKDG-IRAA-DLLKRPEMTYEHIQMIAPAEQPIDPEVAEQVEIQ 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 554 IKYEGYIEKSLQQVEKLKKMENKKIPEDIDYDAITGLATEARQKLKQVRPLSIAQASRIS 613

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 614 GVNPADISILLVYLEQGKI 632


>gi|322437302|ref|YP_004219514.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX9]
 gi|321165029|gb|ADW70734.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX9]
          Length = 672

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/669 (42%), Positives = 395/669 (59%), Gaps = 49/669 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+V+G GHAGCEAA  +A++G  TAL T     +  MSCNPA+GG+ KGHLVRE
Sbjct: 3   VTEQYDVVVVGAGHAGCEAAVASARMGLRTALFTLNLDLVAQMSCNPAVGGIAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID+L G+MG +AD+AGIQFR+LN  +GPAV  PR Q D+ LYR+ M+  + +Q NL + Q
Sbjct: 63  IDSLGGIMGLIADSAGIQFRLLNTSRGPAVWSPRAQCDKALYRVRMKELLENQPNLHLKQ 122

Query: 122 GEVAGFNTEKN---------------------IISSIVMQDNSMIRCSTVVLTTGTFLRG 160
            EV     E                        I  + ++D   I  +  ++TTGTFL G
Sbjct: 123 AEVVDVLIEGPGRREQGSAAAYPDPCSLIPVPCIRGLKLRDGREIHAAATIITTGTFLNG 182

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
           +IH G+ +  AGR G+  S  L  S  +      RLKTGTP RLDG+TI W +  +Q  D
Sbjct: 183 LIHCGEQQYSAGRSGEPASVLLGESLKRLGLRETRLKTGTPPRLDGRTIDWSQFPEQPGD 242

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
               PFS  T ++  RQI C I  T+ ET  +I EN   S +Y+G I++ GPRYCPSIED
Sbjct: 243 PEPTPFSLRTRELPLRQISCHIAHTSPETMWLIRENAHRSPMYTGQIEAIGPRYCPSIED 302

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           KIVRF ++  HQ FLEPEGL T  VY NG+ST+LP+EIQ Q + +IPGLE   ++RPGYA
Sbjct: 303 KIVRFPDKPRHQFFLEPEGLTTHEVYINGMSTSLPQEIQLQMVHSIPGLENTVMLRPGYA 362

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS------ARKSN 394
           IEYD I+P EL  +L  K   GL+LAGQINGT+GYEEAAAQGL+AGIN+      AR   
Sbjct: 363 IEYDAIDPTELDRSLRVKSYEGLYLAGQINGTSGYEEAAAQGLMAGINAALSVKRARGDA 422

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             +     RT++YIG++IDDL SKG  EPYRMFTSRAE+R+ LR DNAD RLTP G +LG
Sbjct: 423 SAEPFHLDRTEAYIGILIDDLISKGTDEPYRMFTSRAEFRLHLRIDNADRRLTPHGHRLG 482

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF------- 507
            IG+     +          ++LL++  L ++ + +   +    G  +    F       
Sbjct: 483 LIGDENWADYEARQHRAAAFKTLLETTRLNAREIPADLYAKLLAGSAQGVDSFAGVLLSD 542

Query: 508 -LSYPDFSIQN------------LFSICPDARKFSSLVIERLQIESS--YAAYTGRQMIE 552
            L  PD  I++            +F+   D    +    ER  +E+   YA Y  +Q+  
Sbjct: 543 LLKRPDLVIEDFVPLLTEALAAPIFTAWQDETFPARTRNERRAVETEIKYAGYLSQQLRS 602

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
             ++K  E   IP  FDY+++  LS E+++    ++P  L QAS++ G+TPAA++L+ +Y
Sbjct: 603 IGKMKQAESTRIPPTFDYTTISGLSREMQQTFQRVRPLTLGQASRLPGVTPAAVSLVHVY 662

Query: 613 IKKNTVKLN 621
           ++  + +L 
Sbjct: 663 LEIQSRRLT 671


>gi|205831496|sp|A3M6R5|MNMG_ACIBT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193077747|gb|ABO12609.2| glucose-inhibited division protein A [Acinetobacter baumannii ATCC
           17978]
          Length = 626

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFSQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|166714098|ref|ZP_02245305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/620 (45%), Positives = 385/620 (62%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q        +VVLT GTFL G IH+G  +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTAQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +         + V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGSGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKK 615
            +I GMTPAA++LLL+++++
Sbjct: 608 QRIPGMTPAAISLLLVHLER 627


>gi|167038668|ref|YP_001666246.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167041018|ref|YP_001664003.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Thermoanaerobacter sp. X514]
 gi|256751461|ref|ZP_05492339.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913771|ref|ZP_07131088.1| glucose inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307725543|ref|YP_003905294.1| glucose inhibited division protein A [Thermoanaerobacter sp. X513]
 gi|320117060|ref|YP_004187219.1| glucose inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|205831567|sp|B0K8H8|MNMG_THEP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831568|sp|B0K5N3|MNMG_THEPX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166855258|gb|ABY93667.1| glucose inhibited division protein A [Thermoanaerobacter sp. X514]
 gi|166857502|gb|ABY95910.1| glucose inhibited division protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749680|gb|EEU62706.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890456|gb|EFK85601.1| glucose inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307582604|gb|ADN56003.1| glucose inhibited division protein A [Thermoanaerobacter sp. X513]
 gi|319930151|gb|ADV80836.1| glucose inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 633

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 14/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+ 
Sbjct: 68  GGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFDSGPSGLFPANQLSET 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  +
Sbjct: 248 NKRTHEIIMANIHRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPSVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT +G K+G + E R ++F  K IQ    +R LL  ++  
Sbjct: 428 MLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMRRLLGVMIKP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDF---SIQNLFSICPDARKFSSLVIERL 536
           S+ +++  IS    G T        Y  L  P+    S + L    PD       V E++
Sbjct: 488 SEEVNNFLIS---KGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKNRPD--DILDSVAEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  +Q+ + +  K  E + IP+D DY  +  LSNE KEKL+ ++P ++ QAS
Sbjct: 543 DINIKYEGYIMKQLRQVEHFKALENKKIPEDIDYYQIHGLSNEAKEKLTKIRPTSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 603 RISGVSPADISVLLIYMQQ 621


>gi|172059048|ref|YP_001815508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Exiguobacterium sibiricum 255-15]
 gi|205831509|sp|B1YGA7|MNMG_EXIS2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171991569|gb|ACB62491.1| glucose inhibited division protein A [Exiguobacterium sibiricum
           255-15]
          Length = 628

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 388/619 (62%), Gaps = 3/619 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAG EA+  AA++G+ T ++T     +G M CNP+IGG  KG +VREIDAL
Sbjct: 8   FDVIVIGAGHAGIEASLAAARMGSKTVMLTMNPDMVGFMYCNPSIGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  DA  IQ ++LN  KGPAVR  R QAD+  Y+  M++ +  + NL + Q  V 
Sbjct: 68  GGEMARAIDATYIQMKMLNTSKGPAVRALRAQADKFEYQNRMKKALEDEPNLLLRQALVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +    +V    +  R   V++TTGTF+RG I IG+L   +G     PS +L   
Sbjct: 128 RLIIEDDTCVGVVTNTGAEYRAKAVIITTGTFMRGKIIIGELSYESGPNNQMPSVNLSKH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  R KTGTP R+DGKTI + KTE Q  D   +PFS  T ++   QI C +T T
Sbjct: 188 LEELGFELARFKTGTPPRIDGKTIDYSKTEIQPGDAVALPFSHETTQMITEQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH++I  N+  S ++SG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+ V
Sbjct: 248 TEYTHQLIDANLHRSPMFSGMIKGTGPRYCPSIEDKVVRFSDKPRHQIFLEPEGRDTEEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++QH  +R+IPGLEK  ++RPGYAIEYD + P +L+PTLETK+I+GLF 
Sbjct: 308 YVQGLSTSLPEDVQHDILRSIPGLEKSEMMRPGYAIEYDAVVPTQLWPTLETKRIAGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A K  + D +  SR+  YIGVMIDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAALKVQERDPLILSRSQGYIGVMIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RL+ IG  LG I E R  + A+  ++       L+ +V+ +
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLSDIGYDLGLINETRHAKLAEKKEDIQREMKRLEKVVIKA 487

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               N   T I      +   A   L  P+ +   +  + P     S    E+++I+  Y
Sbjct: 488 TSEVNERLTEIGVSPLKEALHAITLLKRPEITYAMIADMTPPPVALSEEAAEQVEIQVKY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  +Q+ + + +   EK+ IP+  DY  +  L+ E K+KL+ ++P ++ QAS+I G+ 
Sbjct: 548 AGYIDKQLDQVERMMRMEKKRIPERLDYDVISGLAIEAKQKLNQVRPLSIGQASRISGVN 607

Query: 603 PAALNLLLIYIKKNTVKLN 621
           P+ +++LL+YI++    L 
Sbjct: 608 PSDISILLVYIEQGQYALT 626


>gi|149247916|ref|XP_001528345.1| hypothetical protein LELG_00865 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448299|gb|EDK42687.1| hypothetical protein LELG_00865 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 691

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/640 (43%), Positives = 398/640 (62%), Gaps = 35/640 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++ VIVIGGGHAGCEAA  +A+ GA T LIT   S IG+ SCNP++GG+GKG L+RE+DA
Sbjct: 42  NHPVIVIGGGHAGCEAATGSARSGAKTTLITPDISKIGTASCNPSMGGVGKGTLLREVDA 101

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+ +NL +++ +V
Sbjct: 102 LDGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLTEMQKEILNYQNLSIVESQV 161

Query: 125 AGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                E +            +  +++ +  +++C  +V+TTGTFL G IHIG    PAGR
Sbjct: 162 KDIIIEPDSTKDQSGRDLGTVRGVILDNGQILKCDKIVVTTGTFLGGEIHIGLTAFPAGR 221

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG+  +  L ++F    F  GRLKTGTP RL  KTI +    +Q +D    P SFM D +
Sbjct: 222 MGEKATFGLSDTFRGAGFKLGRLKTGTPPRLSSKTIDYTNLLEQPSDVPPQPMSFMNDNV 281

Query: 234 T--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              N+ ++C  T+T  E H ++  N+  S      +K  GPRYCPSIE K+++F ++  H
Sbjct: 282 ALENQLVKCHQTQTTPEFHSLVANNLDKSIHIRETVK--GPRYCPSIESKVIKFPQKQSH 339

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEG +TD+VYPNGIS  +PEEIQ Q ++ +PG E V +++PGY +EYDYI+P+EL
Sbjct: 340 IVWLEPEGFDTDLVYPNGISCTMPEEIQEQLVKMMPGCENVKMVQPGYGVEYDYIDPREL 399

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+   S K+  +   R+D Y+GV+
Sbjct: 400 TNTLETKLVKGLYLAGQINGTTGYEEAAAQGCIAGINAGLSSQKMKEMRLQRSDGYVGVL 459

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KG+ EPYRMFTSR+E+R+SLR DNAD RLT +G KLG +GE R + FA  ++  
Sbjct: 460 IDDLITKGIEEPYRMFTSRSEFRVSLRADNADKRLTELGYKLGVVGETRYRHFANEMEIM 519

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKF 528
             ++  L+ L LT           + D +  +    ++ LSY   SI +L    P   KF
Sbjct: 520 QNIKDHLQGLRLTGATWLPALNGHRTDVRPESRVDGWKLLSYSGVSILDLL---PHMSKF 576

Query: 529 ------------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
                       S+ ++ R+ +ES Y  +  ++       K +E  L+P +F+Y++   L
Sbjct: 577 TGGEVPSYYKNLSNRLVTRIDVESDYEPFISKEQTHLNAYKADENLLLPTNFNYTNTGNL 636

Query: 577 --SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             S+E    L+ ++P  + QA +I+G+ P  +  LL  ++
Sbjct: 637 KISHEACTILNTIQPRTIGQARRIQGINPTTIFELLKLVR 676


>gi|91203577|emb|CAJ71230.1| similar to putative glucose inhibited division protein A
           [Candidatus Kuenenia stuttgartiensis]
          Length = 604

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 279/616 (45%), Positives = 394/616 (63%), Gaps = 18/616 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVIV+G GHAGCEAA  +A++G +TAL++    T+  MSCNPAIGG+ KG LVRE
Sbjct: 1   MHTEFDVIVVGAGHAGCEAALASARMGLNTALLSINLDTVAQMSCNPAIGGIAKGQLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +V DA GIQFR+LN KKGPAV  PR QAD++ Y++ M++ +  Q+NL + Q
Sbjct: 61  IDALGGEMAQVIDATGIQFRMLNTKKGPAVHSPRAQADKKAYQITMKKRLEHQDNLFMKQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G     N  + +V Q     +   V+LTTGTFL+GVIHIG      GR+G+  S  
Sbjct: 121 EIADGLIVVDNKAAGVVGQSGLQYKSKAVILTTGTFLKGVIHIGNYITSGGRIGELSSER 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S      +  RLKTGT  RL+ +TI +   + Q  DE   PFSF T  ++  Q+ C 
Sbjct: 181 LSGSLRDLGLEVQRLKTGTSPRLNSRTINYKNLKPQHGDENPRPFSFSTKTLSGAQVPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH I+M N+  + +Y+G I + GPRYCPS+EDKIVRF ++  HQIFLEPEGL+
Sbjct: 241 ITYTNQTTHEIVMSNLNRAPLYTGQISTTGPRYCPSLEDKIVRFPDKLQHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NGIST++P ++Q + + +I GLE   I+R GYAIEYD++ P +L  +LETK + 
Sbjct: 301 TLEIYCNGISTSMPHDVQERIVHSIEGLEAAEIVRYGYAIEYDFVPPTQLKLSLETKAVE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+LAGQINGT+GYEEAAAQG++AGIN+A K ++ +     R+++YIGV+IDDL +KG  
Sbjct: 361 NLYLAGQINGTSGYEEAAAQGIMAGINAALKIHEKEPFILDRSEAYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RL   G K G I +          Q+++ L+   +  
Sbjct: 421 EPYRLFTSRAEYRLLLRQDNADRRLMKYGHKYGLISD----------QQWSTLQEKER-- 468

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--ARKFSSLVIERLQIE 539
            L ++ L+   +++K  G+   A + LS P+ +   L  I  +   +     V E+++IE
Sbjct: 469 -LIAETLA--YLNYKTAGQDALA-KILSRPEQTFDQLLGIDSELAEKNVPGDVQEQVEIE 524

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + ++ K  E   IP   DYS +  L  E ++KLS ++P +L QAS+I 
Sbjct: 525 IKYKGYIERQYSQIEKFKKMENHKIPDWLDYSHITELRREARQKLSQIRPLSLGQASRIS 584

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++L+IY+ K
Sbjct: 585 GVSPADISILMIYLAK 600


>gi|27904514|ref|NP_777640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611719|sp|P59485|MNMG_BUCBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27903911|gb|AAO26745.1| glucose inhibited division protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 626

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 298/624 (47%), Positives = 401/624 (64%), Gaps = 19/624 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVI++GGGHAG EAA   +++   T L+T   +TIG++SCNPAIGG+GK HLV+E+D
Sbjct: 5   QNFDVIIVGGGHAGTEAALACSRMKKKTLLLTQNINTIGALSCNPAIGGIGKSHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN KKG AVR  R QADR+LY   +++ +L QENL V+Q E
Sbjct: 65  ALGGIMAKAIDKSGIQFRILNSKKGFAVRSTRAQADRKLYSQTIKKTLLFQENLLVLQAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         I  ++ Q         VVLTTGTFL G I+IG      GR+ D  S +L 
Sbjct: 125 VDDVIVSNYKIMGVITQTKIKFFSKAVVLTTGTFLGGKIYIGSKCFLGGRINDYSSINLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
                     GRLKTGTP R++  TI + K + Q++D  L  FSFM ++  + RQI C I
Sbjct: 185 QRLKDLPIKIGRLKTGTPPRINKHTINFSKLDVQYSDNPLPIFSFMGNQKEHPRQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH I+ +N+K S IYSG I   GPRYCPSIEDKIVRF +RN HQIFLEPEGL+ 
Sbjct: 245 TATNEKTHEIVRKNLKKSPIYSGLITGIGPRYCPSIEDKIVRFSDRNAHQIFLEPEGLHD 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LPE++Q + I +I GLE+  I RPGYA+EYDY +P+ L  TLE+K I G
Sbjct: 305 IEIYPNGISTSLPEDVQVEMIHSIKGLERAQITRPGYAVEYDYCDPRTLKLTLESKFIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGIN-SARKSNKLDCICF-SRTDSYIGVMIDDLTSKGV 420
            FLAGQINGTTGYEEAAAQGL+AG+N S   SNK  C  F +R  +Y+GV+IDDL +KG 
Sbjct: 365 FFLAGQINGTTGYEEAAAQGLLAGLNASLYASNK--CGWFPNRGQAYLGVLIDDLCTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+RAE+R+ LR DNAD RLT I   +  I   R  R+ + +       + L++
Sbjct: 423 KEPYRMFTARAEHRLILREDNADLRLTNIAKSMNLIDNSRWTRYVEKLSNIKNETTRLEN 482

Query: 481 LVLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---- 532
           L + SK  S T +    S K + ++ TA + L  P+ +   L       +KFS  +    
Sbjct: 483 LKIRSKLYSITELNNFFSIKINTES-TAKDLLKRPEINYSTLMLF----KKFSPGIKDKE 537

Query: 533 -IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ+   K     +  ++ K  +Y  +  LSNE+  KL+  KP++
Sbjct: 538 AYEQIEIQEKYCGYIKRQIKAIKNQLNNDYIVLSKIKNYKVVKGLSNEVVSKLNFYKPYS 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G+TPAA+++LLIY+KK
Sbjct: 598 LGQASRISGITPAAISILLIYLKK 621


>gi|228474143|ref|ZP_04058880.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis SK119]
 gi|314935197|ref|ZP_07842550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271838|gb|EEK13175.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis SK119]
 gi|313656532|gb|EFS20271.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis subsp. hominis C80]
          Length = 625

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 389/619 (62%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++QG 
Sbjct: 63  ALGGQMAKAIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +     +      VV+TTGTFLRG I +G +K  +G     PS SL 
Sbjct: 123 VDELLIENDEVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSISLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 183 DNLRELGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNDRTHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLATIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG  LG I E R  RF    Q+       L ++ +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDIGYDLGMISEERYARFNDKRQQIQDEIDRLSNIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + I      + +    A + L  P+ +   +  I  +  +    V E+++I++
Sbjct: 483 KPNEHTQSVIEAHGGSRLKDGILAIDLLRRPEMTYNTILEILEETHQLPEAVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLSEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|196234360|ref|ZP_03133188.1| glucose inhibited division protein A [Chthoniobacter flavus
           Ellin428]
 gi|196221552|gb|EDY16094.1| glucose inhibited division protein A [Chthoniobacter flavus
           Ellin428]
          Length = 617

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/632 (44%), Positives = 390/632 (61%), Gaps = 41/632 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA  AA+LG  T ++T    ++G MSCNPAIGG  KG +VREID
Sbjct: 6   KKYDVIVIGAGHAGIEAAMAAARLGCETLMLTQNLDSVGQMSCNPAIGGQAKGQMVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG   DA  IQFR+LN  KGP+VR PR Q D++ Y+   +  +  Q +LD+ QG 
Sbjct: 66  ALGGVMGLNTDATSIQFRMLNSGKGPSVRSPRAQCDKKAYQFRAKAVLERQPHLDLKQGN 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE      +       +   +VV+TTGTF+RG++H+G      GRMGDS S +L 
Sbjct: 126 VTRILTEGGHACGVETNLGLRVLGRSVVVTTGTFMRGLLHVGLQNQSGGRMGDSFS-TLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR------- 236
           +S  +  F+ GR KTGTP RL+G+TI + + E+Q  DE  +PFS++ +K+  R       
Sbjct: 185 DSLRELGFEVGRFKTGTPCRLNGRTIDFSQCERQGGDEPPLPFSYIPEKLNERLHDIFTL 244

Query: 237 -----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                      Q+ C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK+VRF
Sbjct: 245 NHWRDGKFHVEQLPCWITNTNPRTHELIRSNLDKSPLYAGRIEGVGPRYCPSIEDKVVRF 304

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E+N HQ+FLEPEG +T+  Y NG+ST+LP E+Q+ FIR+IPGLE   I+RPGYA+EYDY
Sbjct: 305 SEKNSHQLFLEPEGRHTEEYYVNGVSTSLPMEVQYAFIRSIPGLENAEIMRPGYAVEYDY 364

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P +L PTLETK++  L+ AGQINGT+GYEEA AQGL+AG N+A K      +  SR D
Sbjct: 365 CPPTQLHPTLETKQVPHLYFAGQINGTSGYEEAGAQGLMAGANAALKLLDRPPLILSRAD 424

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +YIGV+IDDL +KG LEPYRMFTSRAE+R+ LR DNAD RLTPI  + G I   R ++  
Sbjct: 425 AYIGVLIDDLVTKGTLEPYRMFTSRAEHRLHLRQDNADLRLTPIAHRCGLISGYRWEKLQ 484

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD- 524
             I   + LR    +       ++                ++L  P+     L    P+ 
Sbjct: 485 AKIASLSQLREYANTTHFGGGKIA----------------QWLRRPESDHTQL----PEG 524

Query: 525 -ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            +  F++ + + +QIE  YA Y  RQ    ++++  E++ +P   DY ++  L  E ++K
Sbjct: 525 LSAPFAAELWDSIQIELKYAGYITRQEAAIEKLRRNEEKTLPAQLDYEAISGLRAETRQK 584

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           L+ ++P    QA++I G+TPA L LL +Y++K
Sbjct: 585 LASIRPATFGQAARISGVTPADLALLSVYLEK 616


>gi|257095887|ref|YP_003169528.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048411|gb|ACV37599.1| glucose inhibited division protein A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 638

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 294/620 (47%), Positives = 402/620 (64%), Gaps = 9/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G+MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGMKTLLLTHNLETLGAMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  +    NL +      
Sbjct: 67  GGAMAEATDEAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRSRLEKLPNLTIFAQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + ++ +V Q         VVLTTGTFL G+IH+G      GRMGD P+ SL   
Sbjct: 127 DLILDGDRVAGVVSQLGVRFAARAVVLTTGTFLNGLIHVGLTNYTGGRMGDPPAVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLDG+TI +    +Q +D+ L  FSF+ D   + +Q+ C IT 
Sbjct: 187 LRELQLPVGRLKTGTPPRLDGRTIDFSVMVEQHSDDPLPVFSFLGDAARHPQQLPCWITS 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +Y+G I+  GPRYCPSIEDKI RF  ++ H IFLEPEGL T  
Sbjct: 247 TNPQTHAIIRANLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAAKDSHNIFLEPEGLATHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I GLE  +I+RPGYAIEYDY +P+ L  +LET+ I GLF
Sbjct: 307 IYPNGISTSLPFDVQLAIVRSIRGLENCHILRPGYAIEYDYFDPRGLKASLETRAIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A    + +     R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALLVQEREAWTPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + +RR + F++        +  LKS  ++
Sbjct: 427 RMFTSRAEYRLSLREDNADMRLTEEGRRLGLVDDRRWQAFSEKRAAIGREQERLKSTWVS 486

Query: 485 SKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKF-SSLVIERL 536
            + ++   +T +  K      + ++ L  PD S   L ++     P A     + VIE+L
Sbjct: 487 PRLVADDEATRVLGKPLEHEYSLHDLLRRPDVSYAALMTLRAGEVPVAAGLGDAQVIEQL 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  RQ  E       E+   P+ FD+SS+  LS E+++KL++ +P  L QAS
Sbjct: 547 EIQARYQGYIERQQDEVARSLANEQTRFPEGFDFSSVGGLSKEVQQKLAVQRPQTLGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I+GMTPAA+++LL+++K+ 
Sbjct: 607 RIQGMTPAAISILLVHLKRG 626


>gi|319651094|ref|ZP_08005228.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
 gi|317397264|gb|EFV77968.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
          Length = 629

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 389/619 (62%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EA   +A+LGA T +IT     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGVEAGLASARLGAKTLMITINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL +IQG V
Sbjct: 67  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFTYQHEMKKTLENEPNLTLIQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V Q  ++     VV+TTGTFLRG I +G+LK  +G     PS  L  
Sbjct: 127 ERLIVEDGECRGVVTQTGAVYHSKAVVITTGTFLRGEIILGELKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH +I  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNEETHTLIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + +RTIPGLE V ++R GYAIEYD I P +L+PTLETKK+  L+
Sbjct: 307 VYVQGLSTSLPEDVQQKILRTIPGLENVQMMRAGYAIEYDSIVPTQLWPTLETKKVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+  KS   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGMNAGLKSLDKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    Q     ++ L+ +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGRKVGLISEERYEKFLMKKQAIEEEKARLQGIII- 485

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K  S      K  G +       A + L  P+ + +++  + P        V E+++I+
Sbjct: 486 -KPTSDVQELIKSQGGSELKDGIRASDLLKRPEMTYEHIQQVVPAESTLDPDVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP++ DY  +  L++E ++KL  ++P +L QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERLKKMENKKIPENIDYDDINGLASEARQKLKEVRPLSLAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|297539954|ref|YP_003675723.1| glucose inhibited division protein A [Methylotenera sp. 301]
 gi|297259301|gb|ADI31146.1| glucose inhibited division protein A [Methylotenera sp. 301]
          Length = 633

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/618 (46%), Positives = 394/618 (63%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRVLNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  + +V Q        +VVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DIILEGDRAAGVVTQIGLRFTSKSVVLTAGTFLGGLVHVGLQNYSAGRAGDPPAISLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D+ +  FSFM +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMTIQPGDDPVPVFSFMGNVAHHPAQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF +++ HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKDSHQIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 VYPNGISTSLPFDIQLALVRSVRGLENAHILRPGYAIEYDYYDPRGLKSSLETKMVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  S   +  C +R ++Y+GVM+DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYSQGKESWCPARDEAYLGVMVDDLITRGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F++  +     +  LK   + 
Sbjct: 427 RMFTSRAEYRLQLREDNADMRLTEIGRKLGLVDDARWEAFSRKKEAVEREQDRLKKTFVQ 486

Query: 485 SKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIE 539
             N+ +  +  +  GK      + +E L  P+ S + + ++      +    V E+++I 
Sbjct: 487 PANVPTEKM-VEMFGKPLEHEYSLFELLRRPEVSYEAVLTLGEIGLGEVEPSVREQVEIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E    + +E   +P + DY  +  L  E ++KL+  KP  + QAS+I 
Sbjct: 546 AKYQGYIDRQTDEVARSRGQENTRLPDNLDYREIHGLPIEAQQKLNAQKPETIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNT 617
           G+TPAA++LLL+Y+K+ +
Sbjct: 606 GITPAAISLLLVYLKRQS 623


>gi|295678144|ref|YP_003606668.1| glucose inhibited division protein A [Burkholderia sp. CCGE1002]
 gi|295437987|gb|ADG17157.1| glucose inhibited division protein A [Burkholderia sp. CCGE1002]
          Length = 652

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 391/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLIVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDYSQLEEQPGDLDPVPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQI+LEPEGL T+
Sbjct: 247 HTNQRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIYLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMQGLEHAHILRPGYAIEYDYFDPRGLKASLETKVINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+       +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGVLAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETQRLRSTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVI- 533
             K LS   +T +  K      +  + L  P  S   + ++       P+A     +++ 
Sbjct: 487 NPKTLSAEQATELLGKPIDHEYSLADLLRRPGVSYDGVCALRDGTCGAPEALAEDPVLLG 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  + +E   +P+  DY+ +  LS E ++KL   +P 
Sbjct: 547 QIKEQIEIGVKYQGYIDRQAGEIERNEAQENTRLPEGLDYTEVRGLSFEARQKLMQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|37524081|ref|NP_927425.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81170566|sp|Q7NA86|MNMG_PHOLL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|36783504|emb|CAE12344.1| Glucose inhibited division protein A [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 629

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/619 (46%), Positives = 393/619 (63%), Gaps = 9/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++  V +     R   VVLT GTFL G IHIG      GR G  P+ SL  
Sbjct: 126 EDLIVENDTVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGGPPAISLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +      RLKTGTP R+D +TI + +  +Q  D     FSF+ + K   +QI C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLTQQLGDNPTPVFSFLGNVKQHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYTGIIEGIGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRDLKQTLESKFIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR +++ +     R  +YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAARYASEEESWFPRRDQAYIGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + + + ++     R  L+++ +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDSRWEHYCRKLEMVEQERQRLRNIWI 485

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQ 537
              + +   I+        K     + L  P+ + + L S+    P   +  +   ++++
Sbjct: 486 HPNSNNLNDINNILKMPLSKEANGEDLLRRPEMNYKLLTSLPLFSPSLEEPQA--ADQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+
Sbjct: 544 IQVKYEGYIARQQEEIEKQLRNENTSLPVDLDYRQISGLSNEVVAKLNDHKPSSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK 
Sbjct: 604 ISGVTPAAISILLVWLKKQ 622


>gi|184158704|ref|YP_001847043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ACICU]
 gi|260554556|ref|ZP_05826777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 19606]
 gi|332873697|ref|ZP_08441640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6014059]
 gi|238690971|sp|B2HUB2|MNMG_ACIBC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|183210298|gb|ACC57696.1| putative NAD/FAD-utilizing enzyme [Acinetobacter baumannii ACICU]
 gi|260411098|gb|EEX04395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 19606]
 gi|322507485|gb|ADX02939.1| gidA [Acinetobacter baumannii 1656-2]
 gi|323518618|gb|ADX92999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332738085|gb|EGJ68969.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6014059]
          Length = 626

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|91777103|ref|YP_546859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacillus flagellatus KT]
 gi|123380252|sp|Q1GXL9|MNMG_METFK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91711090|gb|ABE51018.1| glucose inhibited division protein A [Methylobacillus flagellatus
           KT]
          Length = 634

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/620 (46%), Positives = 399/620 (64%), Gaps = 7/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI++GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         VVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DIILEGERVAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DG+TI +    +Q  D  +  FSF+     +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMAEQPGDSPVPVFSFLGSAEQHPAQLPCWITF 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +Y+G I+  GPRYCPS+EDKI RF +++ HQ+FLEPEGL T+ 
Sbjct: 247 TNEKTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKDSHQVFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKSSLETKAIRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  + + D    +R  +Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYAQEKDAWWPTRDQAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R + F +  +     +  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADMRLTEAGRKLGLVDDVRWEAFQRKQEAIEREQQRLRRTFIH 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS--LVIERLQIE 539
            +++    +     K   +  + +E L  P+ S + L S+ P A +  +   V ++L+I 
Sbjct: 487 PQHVPQEQLQQVFGKVLEREYSMFELLRRPEVSYEALLSL-PQAGEGEADPQVRQQLEIV 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E + +K  E   +P + DYS +  LS E+++KL+  KP  + QA +I 
Sbjct: 546 AKYQGYIDRQAEEIERLKESEHYRLPLNMDYSEVHGLSIEVQQKLNKQKPETIGQAGRIS 605

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+TPAA++LLL+++K+ + K
Sbjct: 606 GVTPAAVSLLLVHLKRKSRK 625


>gi|312882250|ref|ZP_07741996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370094|gb|EFP97600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 632

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/621 (44%), Positives = 391/621 (62%), Gaps = 5/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G+M +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGIMAKAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYIRHALENAANLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVIGVITQMGLKFFAQSVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D+    FSF+  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSGLEVQHGDDPAPVFSFLGHRAQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CFITHTNEATHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKSSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q   +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVDIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWNPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R +RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEQARELGLVDDERWQRFNQKIENIELERQRLK 481

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           ++ +  K+     ++ + +    R A   + L  P+ +   L  +   +         E+
Sbjct: 482 NIWMNPKSEGIADLNQYLKSPMVREASGEDLLRRPELNYLQLTKLAAFSPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P DFDY  +  LSNE+  KL+  KP +L  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTKLPLDFDYQLVKGLSNEVVSKLNESKPESLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+TPAA+++LL+++KK 
Sbjct: 602 SRISGVTPAAISILLVHLKKQ 622


>gi|163803608|ref|ZP_02197474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. AND4]
 gi|159172602|gb|EDP57460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. AND4]
          Length = 631

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/625 (44%), Positives = 388/625 (62%), Gaps = 13/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V      ++ +  +V Q       + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVNQDRVVGVVTQMGLKFHANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G    +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFGNAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           S  +   +        L  T ++ +  G+       + Y   +  + F+   + ++ S  
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEIVYSTLTQLDAFAPALEDQQAS-- 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP +
Sbjct: 540 --EQVEIQVKYDGYIKRQQDEIEKSLRHEHTKLPTDLDYQDVKGLSNEVVAKLTEAKPES 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           +  AS+I G+TPAA+++LL+++KK+
Sbjct: 598 IGIASRISGITPAAISILLVHLKKH 622


>gi|254515876|ref|ZP_05127936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR5-3]
 gi|219675598|gb|EED31964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR5-3]
          Length = 643

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 292/622 (46%), Positives = 392/622 (63%), Gaps = 13/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GK HLVREIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGCATLLLTHSVDTLGQMSCNPAIGGIGKSHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D AGIQFRVLN +KGPAVR  R QADR LYR A++  I +Q  L V Q  V 
Sbjct: 67  GGAMAKATDQAGIQFRVLNSRKGPAVRATRAQADRVLYRNAIRSIIEAQSGLQVFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q     R   V+LTTGTFL G +HIG  K   GR GD PSN+L   
Sbjct: 127 DLIIENGAVQGVVTQTGLRFRAPRVILTTGTFLGGQMHIGLTKSAGGRAGDPPSNTLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD ++I     E Q+ DE     SF+ D   +  Q  C +  
Sbjct: 187 LRELPLRVERLKTGTPPRLDARSIDLASLETQWGDEPRPVMSFLGDPDQHPDQRCCWVAY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II E +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T+ 
Sbjct: 247 TNQHTHDIIREGLDRSPLYTGVIEGEGPRYCPSIEDKIQRFADKTSHQVFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYD+ +P++L  +LET+ I GL+
Sbjct: 307 LYPNGISTSLPFDVQMALVRSIQGFENAHITRPGYAIEYDFFDPRDLRSSLETRAIGGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A    +    C  R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALAIREEAPWCPRRDEAYLGVLVDDLITLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA---KYIQEYNFLRSLLKSL 481
           RMFTSRAE+R+ LR DNAD RLT  G KLG + + R  +F+   + I++    + LL+S 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTEQGRKLGLVDDERWAQFSEKRELIEQEQ--KRLLRSF 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
           V    + ++ S++ K        Y   E L  P+    ++ ++  D+   S+     ++ 
Sbjct: 485 V-HPGSPAANSLNAKLSKPLSREYSYAELLKRPELEYADISAL--DSLGISNPQAALQVS 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P D DY  +  LSNE+++KL   +P  L +AS+
Sbjct: 542 IQAKYAGYIDRQQDEIDRVRRYEGLTLPSDMDYLQVSGLSNEVRDKLIAQQPETLGRASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TPAA++LLL+++K+   K
Sbjct: 602 IPGVTPAAISLLLVHMKRRQGK 623


>gi|117927029|ref|YP_867646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Magnetococcus sp. MC-1]
 gi|205831531|sp|A0LE47|MNMG_MAGSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117610785|gb|ABK46240.1| glucose inhibited division protein A [Magnetococcus sp. MC-1]
          Length = 599

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/616 (45%), Positives = 394/616 (63%), Gaps = 23/616 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ +DV+V+G GHAGCEAA  AA LG  T L T    +IG MSCNPAIGG+GKGHLV+
Sbjct: 1   MFNQHFDVVVVGAGHAGCEAAHAAATLGCRTLLSTQVIDSIGQMSCNPAIGGIGKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G+MG VAD +GIQF+ LN +KGPAV G R Q D+  YR  M++ + +  NL++ 
Sbjct: 61  ELDALGGVMGIVADQSGIQFKKLNQRKGPAVHGSRAQIDKMAYRKNMKKILDACANLEIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     + + +  +    N +  C  +V+ TGTFL G+IHIG+ K P+GR+GD  S+
Sbjct: 121 QAEVVELIIKNSCVVGVKTDWNEVYSCGAIVIATGTFLDGLIHIGERKFPSGRLGDKESH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +         R KTGTP RLDG+T+  +K  +Q  D    PFSFM DKI   ++ C
Sbjct: 181 PLAVNIKSLGLKISRFKTGTPPRLDGRTVNIEKLNRQDGDAIPSPFSFMHDKIERPEMPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I +T+ ET +II +NI  SA+YSG I+  GPRYCPSIEDKI +F ER  HQ+FLEPEG 
Sbjct: 241 WIAQTSKETKQIIEKNIHRSAMYSGQIEGVGPRYCPSIEDKIKKFKEREVHQVFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y NG+ST++P ++Q Q IR+I GLE   I++PGYAIEYD + P EL  TL+TKK 
Sbjct: 301 NTNEMYVNGVSTSMPIDVQWQMIRSIVGLENAQIVKPGYAIEYDMVMPTELDHTLKTKKY 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG++AG+N+AR + K     F R D Y GVM+DDL ++GV
Sbjct: 361 DGLYLAGQINGTTGYEEAAAQGMIAGLNAARFAKKESSYRFERYDGYFGVMVDDLVTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSR+E RI  R DNAD RLTP+G +LG +G +R +++    ++Y+ L  L   
Sbjct: 421 DEPYRMFTSRSELRIVHREDNADMRLTPLGHELGLVGHKRWEKYLSKKKQYDLLEDL--- 477

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQ 537
                      S  FK +G+  +  E L   D  ++    +C +A +  +L   V+E  +
Sbjct: 478 -----------SQKFKINGQPVS--EILKRTDCDLEK---VC-EAMQLDALSKNVLEIYK 520

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            +  Y+ Y  + + E   ++     ++PK+ D+S + +LS+E++ +L       +     
Sbjct: 521 NDLIYSGYEKKIIAENSRVEKYRSHVLPKEIDWSKVASLSSEVRLRLEKSDCRTVADVIA 580

Query: 598 IEGMTPAALNLLLIYI 613
            +G+TPA++  +LIY+
Sbjct: 581 TKGVTPASVVNILIYL 596


>gi|188588132|ref|YP_001922716.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188498413|gb|ACD51549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 626

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 275/611 (45%), Positives = 395/611 (64%), Gaps = 3/611 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVVVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N ++ I+ ++ ++ R   V+L TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEGNKVTGIITRNGAIFRAKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSKNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I +NI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKDNIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    + +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEEPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G +   R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTAERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 NLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             ++    ++   +  K  + YE +  P+    +L ++  +  + S  + E++ I + Y 
Sbjct: 491 RETNEFLLAVGSAELKKPISFYELIKRPEVDYFSLKNLDTEREELSEDIGEQINIIAKYE 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ +KP ++ QAS+I G++P
Sbjct: 551 GYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIKPISIGQASRISGVSP 610

Query: 604 AALNLLLIYIK 614
           A +++LLIY++
Sbjct: 611 ADISVLLIYLE 621


>gi|297570271|ref|YP_003691615.1| glucose inhibited division protein A [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926186|gb|ADH86996.1| glucose inhibited division protein A [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 662

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/662 (43%), Positives = 394/662 (59%), Gaps = 45/662 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+IV+G GHAGCEAA  AA+LG  TAL+     TI ++SCNPA+GGL KGHLVRE
Sbjct: 1   MKEHYDIIVVGAGHAGCEAALAAARLGCRTALLVMNADTIAALSCNPAVGGLAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  DA GIQFR LN  +GPAVR  R QADR LY   M++ I +Q NL++ Q
Sbjct: 61  IDALGGEMARNIDATGIQFRQLNTSRGPAVRSSRAQADRRLYPQRMKKVIEAQPNLELRQ 120

Query: 122 GEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +  ++ +  +       +    V++TTGTFL G+IHIG    PAGR+GD 
Sbjct: 121 ATADQLLIDTSHGRSRVCGVETSLGERLLAGAVIITTGTFLNGLIHIGLKHFPAGRLGDP 180

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE--RLIPFSFMTDKITN 235
           PS SL        F  GR+KTGTP RL+G +I + + E Q  D+  +L  F+ +  K   
Sbjct: 181 PSLSLPGHLKALGFAMGRMKTGTPPRLNGGSIDYRQLESQPGDDPPQLFSFANVGQKPPL 240

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C IT T   TH II      S +++G I+  G RYCPS+EDKI+RF E+  HQIFL
Sbjct: 241 PQVPCHITYTTAATHEIIRAGCGQSPLFTGVIQGVGARYCPSVEDKIIRFPEKERHQIFL 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+T  VYPNG+ST+LP E+QH  IR++PGLE+  +IRPGYAIEYDY++P EL P L
Sbjct: 301 EPEGLDTLEVYPNGLSTSLPLEVQHAMIRSVPGLERARMIRPGYAIEYDYVDPLELHPWL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E K++  LFLAGQINGT+GYEEAAAQGL+AGIN+ R+   L+ +   R+ +YIGV+IDDL
Sbjct: 361 ECKRLEHLFLAGQINGTSGYEEAAAQGLMAGINAVRQLGGLEPVVLDRSQAYIGVLIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYR+FTSRAEYR+ LR DNAD RL  IG ++G + E R + F +  +    L+
Sbjct: 421 VTKGTKEPYRLFTSRAEYRLLLREDNADFRLCEIGHQIGLLDEPRYRFFRRKRENMALLK 480

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK----- 527
             L+   L      +  ++       R   +  E L  P+ +I  + ++  ++       
Sbjct: 481 QQLEQTRLHPTPEVNRQLAELPSSPLRQPISLAELLRRPELNIDTVLALAGESGALPAAQ 540

Query: 528 -------------------------------FSSLVIERLQIESSYAAYTGRQMIEAKEI 556
                                          FS  + + +++E  YA Y  RQ  + +  
Sbjct: 541 PLAAGTLAAPAPAIDPAIAPAGHGEAQQPTYFSRHIRQEVELELKYAGYIARQQEQVQRF 600

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +  E + +P D  Y+ +P LS E+ EKL  ++P  L QA++I G+TPAA+++L + +KK 
Sbjct: 601 RKLESQRLPDDLQYAGMPGLSLEVAEKLERVRPRTLGQAARISGITPAAISILQVQLKKR 660

Query: 617 TV 618
           T 
Sbjct: 661 TA 662


>gi|296157546|ref|ZP_06840381.1| glucose inhibited division protein A [Burkholderia sp. Ch1-1]
 gi|295892318|gb|EFG72101.1| glucose inhibited division protein A [Burkholderia sp. Ch1-1]
          Length = 652

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 391/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRGRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQGKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVI- 533
             K LS+   T++  K      +  + L  P  S   + ++       P+      +++ 
Sbjct: 487 NPKTLSTDEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPETLAEDDVLLG 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|241664777|ref|YP_002983137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia pickettii 12D]
 gi|240866804|gb|ACS64465.1| glucose inhibited division protein A [Ralstonia pickettii 12D]
          Length = 649

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/629 (45%), Positives = 387/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM   ++  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSINFSVLEEQPGDLDPVPVFSFMGRAEMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE   I+RPGYAIEYDY +P+ L  +LE+K ISGL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAYILRPGYAIEYDYFDPRALKASLESKAISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ ++    D     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGQQVQGKDAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEVGRALGVVDDARWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--------CPDARK--FSS 530
               L    +  +  K   +     + L  P+ + + L  +         P A     + 
Sbjct: 487 NPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLMGMQGGKYALEAPLAEDPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP 
Sbjct: 547 QIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|163751411|ref|ZP_02158636.1| glucose-inhibited division protein A [Shewanella benthica KT99]
 gi|161328714|gb|EDP99862.1| glucose-inhibited division protein A [Shewanella benthica KT99]
          Length = 630

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/620 (47%), Positives = 384/620 (61%), Gaps = 15/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G++T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLRLFQQGVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q        TVVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENGRVIGVVTQMGLAFEAPTVVLTAGTFLSGKIHIGLQNYSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D  +I +D   +Q  D  L   SF+ D K   RQ+ C +T 
Sbjct: 187 LRELPLRIGRLKTGTPPRIDANSINFDLMTEQKGDTPLPVMSFVGDVKDHPRQVSCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLNT+ 
Sbjct: 247 TNERTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKTSHQIFIEPEGLNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLDLVRSIKGMENAQIIRPGYAIEYDYFDPRDLKKSLETKAIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +    +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGMNASLQVQGKESWAPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVL 483
           RMFTSRAEYR+ LR DNAD RLT  G + G + + R  +F+K  +     L+ L    V 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGREFGLVDDNRWSQFSKKRESIELELQRLRGQWVH 486

Query: 484 TSKNL-------SSTSISFKQDGKTRTAYEFLSYPDF-SIQNLFSICPDARKFSSLVIER 535
            +  L        +T IS +   +       + YP    ++       D R       E+
Sbjct: 487 PNSPLLDVLNPQLNTPISREASFEDLLRRPEMDYPKLMKLEGFGPGLEDQR-----AAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QA
Sbjct: 542 VQIQIKYSGYIQRQQDEIDKALKHETTGLPLDLDYQEVPGLSNEVIAKMNEYKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I GMTPAA+++LL+++K+
Sbjct: 602 SRISGMTPAAISILLVHLKR 621


>gi|187251664|ref|YP_001876146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Elusimicrobium minutum Pei191]
 gi|186971824|gb|ACC98809.1| Glucose-inhibited division protein [Elusimicrobium minutum Pei191]
          Length = 587

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 381/617 (61%), Gaps = 37/617 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A+LGA T LIT    TI  MSCNP+IGG+ KG +VREIDAL
Sbjct: 8   YDVIVVGGGHAGCEAALASARLGAKTLLITQNLDTIAQMSCNPSIGGVAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG++ DAAG+ + +LN  KGPAV  PR Q D+++Y+   +  +  Q NL++IQ EV 
Sbjct: 68  GGAMGKITDAAGLHYHMLNTGKGPAVHSPRVQCDKKIYQAEYKHTLEKQPNLELIQDEVK 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +++  +V    +      V+LTTGTFL GVIHIG +  P GR GD+PSN L  S
Sbjct: 128 ELYFEGSVLKGVVTLRGTKYLSKVVILTTGTFLGGVIHIGGVSFPGGRYGDTPSNFLTES 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K D +  R KTGTP R++ K + +    +Q +D    P S  T       + C ITRT
Sbjct: 188 LKKTDLNVLRFKTGTPMRINAKDVDFSVFREQPSDNPFEPMSIFTAPFERNFLSCYITRT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH I+  N+K SA+YSG I + GPRYCPS+EDKIV+F +   H IFLEPEG NT   
Sbjct: 248 TEKTHEILKRNMKRSALYSGQITALGPRYCPSVEDKIVKFDQAPSHPIFLEPEGFNTQEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G ST++PE++Q + + ++PGLEK  + R GYAIEYD+++P EL+ TLE KKI GL+ 
Sbjct: 308 YIQGFSTSMPEDVQRELLISVPGLEKAKLTRAGYAIEYDFVDPMELYATLEVKKIPGLYH 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+  K N  + +   R  +Y GVMIDDL +KGV EPYR
Sbjct: 368 AGQINGTTGYEEAGAQGLIAGLNAVLKINGKEPVILGRDTAYTGVMIDDLVNKGVNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR DNAD RLT IG K G + +  ++ F +Y +     +S         
Sbjct: 428 MFTSRAEYRIMLRSDNADLRLTDIGFKTGLVAKEYKQSFEEYKKAVEVFKS--------- 478

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                           +  +E ++ P + +++       ARK +        I++ Y+ Y
Sbjct: 479 --------------NPKAEFEAVNMPAWRVES-------ARKTAV-------IDAMYSGY 510

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             R   +A+++   +K +IP+ FD S++  +  E  +KL  ++P  L QAS+I G+TPA 
Sbjct: 511 YDRFKKDAEKLAQADKIIIPEGFDPSAVKGILIESSQKLKKVRPQTLGQASRIPGVTPAD 570

Query: 606 LNLLLIYIKKNTVKLNE 622
           + LL ++I++  +  N+
Sbjct: 571 IQLLAVHIERYRLSKNK 587


>gi|322513172|ref|ZP_08066303.1| glucose inhibited division protein A [Actinobacillus ureae ATCC
           25976]
 gi|322121068|gb|EFX92892.1| glucose inhibited division protein A [Actinobacillus ureae ATCC
           25976]
          Length = 630

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 300/623 (48%), Positives = 393/623 (63%), Gaps = 8/623 (1%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI R  YDVIV+GGGH G EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MIYREIYDVIVVGGGHGGTEAALAPARMGLKTLLLTHNLDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+
Sbjct: 61  KEIDAMGGLMAIATDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  +
Sbjct: 121 FQQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQI 238
             L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM +  +  RQI
Sbjct: 181 TMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPE
Sbjct: 241 PCYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK
Sbjct: 301 GLSTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + 
Sbjct: 361 AIEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L
Sbjct: 421 GTKEPYRVFTSRAEYRLLLREDNADIRLTPIAHQLGLIDDARWARFNQKMENIERERERL 480

Query: 479 KSLVL--TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVI 533
           K + +   S++L++ +        TR A   + L  P+ + + L  +   A         
Sbjct: 481 KQIWIHPQSEHLAAVN-ELVSSPLTREASGEDLLRRPEVTYEKLVQVAAFAPALDDKQAA 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I   Y  Y   Q  E +  K  E  LIP +F+Y  + +LSNE++ KL   +P ++ 
Sbjct: 540 EQVEISIKYQGYIEHQQNEIERHKRHENTLIPAEFNYDKVESLSNEVRAKLMQHRPVSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+TPAA+++LL+ +KK 
Sbjct: 600 QASRISGITPAAISILLVNLKKQ 622


>gi|309780414|ref|ZP_07675164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia sp. 5_7_47FAA]
 gi|308920807|gb|EFP66454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia sp. 5_7_47FAA]
          Length = 649

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSINFSVLEEQPGDLDPVPVFSFMGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K ISGL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRALKASLESKAISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +    D     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEVGRALGVVDDARWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--------CPDARK--FSS 530
               L    +  +  K   +     + L  P+ + + L  +         P A     + 
Sbjct: 487 NPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLMGMQGGKYALESPLAEDPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP 
Sbjct: 547 QIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|224475498|ref|YP_002633104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420105|emb|CAL26919.1| glucose inhibited division protein A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 624

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/620 (45%), Positives = 400/620 (64%), Gaps = 7/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EA   +A+ GA T ++T     +G M CNP++GG  KG +VREIDA
Sbjct: 4   DYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNVGFMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  +ENL ++QG V
Sbjct: 64  LGGQMAKTIDRTHIQMRMLNTGKGPAVRALRAQADKVLYQKEMKRVLEDEENLHIMQGMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +     +  R   VV+TTGTFLRG I +G LK  +G     PS +L +
Sbjct: 124 DELIIEDDEIKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNLKYSSGPNHQLPSVTLAD 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C +T 
Sbjct: 184 NLRELGFDIVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEFILDQLPCWLTY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG +T+ 
Sbjct: 244 TNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKYVRFNDKPRHQLFLEPEGRDTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + ++TI GLEK +++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 304 VYVQGLSTSLPEHVQREMLQTIEGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIKNLY 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +         SR+D+YIGV+IDDL +KG  EPY
Sbjct: 364 TAGQINGTSGYEEAAGQGIMAGINAAGRVLGTGEKVLSRSDAYIGVLIDDLVTKGTNEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL-LK 479
           R+ TSRAEYR+ LR DNAD RLT +G +LG I + R  RF     +   E N L ++ +K
Sbjct: 424 RLLTSRAEYRLLLRHDNADLRLTDLGHELGMISDERYARFNEKRDQIEAEINRLTNIRIK 483

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + S + S  +DG    A E L  P+   Q +  I  +  +  + V E+++I+
Sbjct: 484 PNEHTQEVIKSRNGSPLKDGI--LAIELLRRPEMDYQAILDILEEDHQIPADVEEQVEIQ 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + +++K  E++ IP D DYS + +L++E +EKL+ +KP N+ QAS+I 
Sbjct: 542 TKYEGYINKSLQQVEKVKRMEQKKIPHDLDYSKIDSLASEAREKLAEVKPLNIAQASRIS 601

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+ PA +++LL+Y+++  ++
Sbjct: 602 GVNPADISILLVYLEQGKLE 621


>gi|213158566|ref|YP_002319864.1| glucose inhibited division protein A [Acinetobacter baumannii
           AB0057]
 gi|215482980|ref|YP_002325185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB307-0294]
 gi|301347678|ref|ZP_07228419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB056]
 gi|301511675|ref|ZP_07236912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB058]
 gi|301597343|ref|ZP_07242351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB059]
 gi|226704789|sp|B7H0I9|MNMG_ACIB3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704790|sp|B7IC15|MNMG_ACIB5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|213057726|gb|ACJ42628.1| glucose inhibited division protein A [Acinetobacter baumannii
           AB0057]
 gi|213987529|gb|ACJ57828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB307-0294]
          Length = 626

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|330794085|ref|XP_003285111.1| hypothetical protein DICPUDRAFT_5571 [Dictyostelium purpureum]
 gi|325084937|gb|EGC38354.1| hypothetical protein DICPUDRAFT_5571 [Dictyostelium purpureum]
          Length = 608

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/620 (47%), Positives = 400/620 (64%), Gaps = 34/620 (5%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EA   A+++GA T LIT   +TIG MSCNP+IGG+GKG+LV EIDAL G
Sbjct: 1   VVVIGGGHAGTEACTAASRVGADTLLITQTINTIGVMSCNPSIGGVGKGNLVTEIDALGG 60

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +MG+ AD +G  FR+LN  KG AV GPR Q DRELY+ ++   + + E L + +G V   
Sbjct: 61  IMGKAADESGCLFRILNSSKGSAVHGPRAQIDRELYQESIHNILSTYEKLSIREGMVEDL 120

Query: 128 -------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                  N  K I   + +QD ++++   VV+TTGTFL GVIH+G  +IPAGR+GD  + 
Sbjct: 121 LLDESDPNNRKVI--GVSLQDGTIVKTKKVVITTGTFLGGVIHLGNKRIPAGRIGDQAAT 178

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L  +  +  F+ GRLKTGTP RLDG TI ++  E Q  DE   PFSF   K+     Q+
Sbjct: 179 ALSVTLERIGFELGRLKTGTPPRLDGSTINYEGLEIQNGDEIPTPFSFSNRKVKYNQSQL 238

Query: 239 ECGITRTNLETHRIIMENIKHSAIY-SGDI-KSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
            C +TRTN E+H+II+EN+    +  SG+  K  GPRYCPSIE K+ RF E   HQI+LE
Sbjct: 239 ACHMTRTNEESHKIILENLDSRPVLDSGENGKGLGPRYCPSIETKLERF-EGKFHQIWLE 297

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG NTDVVYPNGIS +LPE++Q +F+R+I GLE V ++RPGYAIEYDYI+P+EL  TLE
Sbjct: 298 PEGFNTDVVYPNGISMSLPEDVQLKFLRSIQGLENVRMLRPGYAIEYDYIDPRELKHTLE 357

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDL 415
           TKKI+GL+LAGQINGTTGYEEA AQG++AGIN+      +   +  SR++ Y+GV++DDL
Sbjct: 358 TKKINGLYLAGQINGTTGYEEAGAQGILAGINAGLSIDEEKQQMVISRSEGYLGVLVDDL 417

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER------RQKRFAKYIQ 469
            + GV EPYRMFTSR+E+RISLR  NAD RLT    K G   +       ++K+    + 
Sbjct: 418 VTVGVDEPYRMFTSRSEFRISLRAHNADMRLTEKAYKFGSASKEQYENLLKKKKIISDVL 477

Query: 470 EY---NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
           E+    +  S LK+L +  K+  S + +  +    R    F  +     ++L    P+  
Sbjct: 478 EFLSVEYKPSELKTLGINVKDKMSLADTIAK----RKEVNFEHFRHLIPKDLMDNLPEE- 532

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                 I  ++ E  Y  Y+ +  +E ++++  E  LIP+ FD++ +  LS ELK+KLS 
Sbjct: 533 -----YIPLIESECRYMEYSSKHTVEMEKLRNREDSLIPESFDFNEIGQLSTELKQKLSK 587

Query: 587 LKPFNLLQASKIEGMTPAAL 606
           ++P ++  AS+I GMTP AL
Sbjct: 588 IRPTSIAAASRISGMTPTAL 607


>gi|169795494|ref|YP_001713287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AYE]
 gi|205831482|sp|B0V7I0|MNMG_ACIBY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169148421|emb|CAM86287.1| glucose-inhibited division protein A [Acinetobacter baumannii AYE]
          Length = 626

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTTQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|189499008|ref|YP_001958478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium phaeobacteroides BS1]
 gi|189494449|gb|ACE02997.1| glucose inhibited division protein A [Chlorobium phaeobacteroides
           BS1]
          Length = 623

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/625 (45%), Positives = 392/625 (62%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA   A++G    LIT   S I  MSCNPAIGG+ KG + REIDAL
Sbjct: 4   YDLIVAGAGHAGCEAALAGARMGLKCLLITSDFSAIARMSCNPAIGGVAKGQITREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QADR  Y   M++ I  + N+D++Q  V 
Sbjct: 64  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADRTNYSAYMRKIIEQETNIDLLQDSVI 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
              T +   +  ++     I    V+L+ GTFL G+IHIG    P GR + + P   L  
Sbjct: 124 RIATNQGTCNGAIVSSGRTIEAKAVILSCGTFLNGLIHIGMNHYPGGRTIAEPPVQGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           S     F+ GRLKTGTP R+D +++ + +   Q  D    PFSF T+ +  R Q+EC +T
Sbjct: 184 SLASLGFEHGRLKTGTPPRIDQRSVDYARVSVQPGDRDPSPFSFSTESLAGRKQVECFLT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   THRI+ E  + S ++SG ++  GPRYCPSIEDKI RF E+N H IFLEPEG  T+
Sbjct: 244 ATTENTHRILQEGFERSPLFSGKVQGVGPRYCPSIEDKIHRFREKNSHHIFLEPEGFETN 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + +R+IPGLE V ++RPGYAIEYDY  P +L PTLETK+I  L
Sbjct: 304 EMYVNGFSTSLPEDIQLKGLRSIPGLENVIMMRPGYAIEYDYFYPFQLHPTLETKRIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQG++AGIN+A    + + +   R+++YIGV+IDDL +K   EP
Sbjct: 364 YFAGQINGTSGYEEAAAQGIMAGINAALNIRQKEPLILKRSEAYIGVLIDDLITKETNEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+RI LR DNAD RL P G   G + E   +      +    ++ L+ S+ +
Sbjct: 424 YRMFTSSAEHRIILRQDNADLRLMPFGYACGLLSENTYRNLEIKRRNIASVKELISSIRV 483

Query: 484 TSKNLS-------STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSL---- 531
            S +++       S SIS    G TR A   L  P  ++ +L +  P+ A + S +    
Sbjct: 484 ASDSINALLAEQGSPSIS----GSTRIA-TILKRPKITLSSLVNAFPEVADQISEVTQDN 538

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V+E+++I+  Y  Y  R+ + A++I   +   IP  F+YS+L  LSNE KEKLS +KP 
Sbjct: 539 TVLEQVEIDCKYEGYIQRERLMAEKIARLDSHRIPASFNYSALKGLSNEGKEKLSKVKPS 598

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G+TPA +++L++ I +
Sbjct: 599 TVGQASRILGVTPADISVLMVKIGR 623


>gi|169633204|ref|YP_001706940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii SDF]
 gi|238688129|sp|B0VLL2|MNMG_ACIBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169151996|emb|CAP00861.1| glucose-inhibited division protein A [Acinetobacter baumannii]
          Length = 626

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIREILENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|171462843|ref|YP_001796956.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|238692827|sp|B1XSC4|MNMG_POLNS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171192381|gb|ACB43342.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 640

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/628 (45%), Positives = 399/628 (63%), Gaps = 14/628 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++++DVIV+GGGHAG EAA  +A++G  T LITH    +G+MSCNP+IGG+GKGHLV+EI
Sbjct: 4   SKNFDVIVVGGGHAGTEAALASARMGCDTLLITHSIENLGAMSCNPSIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G M    D AGIQFR+LN  KGPAVR  R Q DR LY+ A++R + +Q NL + Q 
Sbjct: 64  DAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQGDRVLYKAAIRRRLENQPNLSLFQA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + + +  +V Q         VVLT GTFL G IH+G      GR GD  + SL
Sbjct: 124 AVDDLPVKGDEVQGVVTQMGLEFMAKKVVLTAGTFLDGKIHVGLNNYAGGRAGDPAAVSL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIEC 240
                +     GRLKTGTP R+DG TI +    +Q  D   +P FS++     + +Q+ C
Sbjct: 184 SARLKELKLPQGRLKTGTPPRIDGLTIDFSVMLEQPGDLDPVPVFSYLGRPEQHPKQVPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ TN +TH II   +  S +Y+G IK  GPRYCPSIEDKI RF  RN HQIFLEPEGL
Sbjct: 244 WISHTNEKTHDIIRGGLDRSPMYTGVIKGVGPRYCPSIEDKIHRFASRNSHQIFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+  YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYD+ +P++L  +LETK I
Sbjct: 304 TTNEFYPNGISTSLPFDVQWDLVRSIRGMESAVIVRPGYAIEYDFFDPRQLRHSLETKVI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAAAQG++AGIN+   +   +     R++SYIGV++DDL ++GV
Sbjct: 364 GGLYFAGQINGTTGYEEAAAQGMLAGINAGLAAKGKEPWLPKRSESYIGVLVDDLIARGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT IG  LG + + R   F +  +  +   S L++
Sbjct: 424 QEPYRMFTSRAEYRLSLREDNADMRLTAIGRDLGLVDDYRWGVFCRKQEAVSRETSRLQN 483

Query: 481 LVLTSKNLSSTSIS--FKQDGKTRTAY-EFLSYPDFSIQNLFSI-----CPDARK----F 528
           + +  K+ ++  +S    QD    ++  E L  P  + +++ ++      P+        
Sbjct: 484 IWVGPKSEAAPFVSQLLDQDLSHESSLAELLRRPGVTYESIIALGDGMWAPETLDEDLGL 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           ++ + ++++I   Y  Y  RQ  E    +  E  L+P+  DYS +  LS E+++KL++ K
Sbjct: 544 AAQISDQVEISVKYQGYIERQATEIARQEHNETLLLPESLDYSQVIGLSKEVQQKLNLHK 603

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKN 616
           P  L QA +I G+TPAAL+LLL+++KK+
Sbjct: 604 PETLGQAGRISGVTPAALSLLLVHLKKD 631


>gi|15896964|ref|NP_350313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium acetobutylicum ATCC 824]
 gi|21263674|sp|Q97CW3|MNMG_CLOAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15026840|gb|AAK81653.1|AE007868_9 Glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Clostridium acetobutylicum ATCC 824]
 gi|325511141|gb|ADZ22777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium acetobutylicum EA 2018]
          Length = 626

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/614 (45%), Positives = 392/614 (63%), Gaps = 9/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  A+++G  T + T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 9   YDVIVIGGGHAGCEAALAASRMGCRTLMCTMNLDSIAMMPCNPNIGGTAKGHLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN+ KGPAV   R QAD+  Y   M+  + +QE+L + Q EV 
Sbjct: 69  GGEMGVNIDKTFIQSRMLNISKGPAVHSLRAQADKVRYSEVMRNVLENQEDLYLRQIEVI 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  IV ++ +    +T+VL TGT+LR  I IG++    G  G  P+N L  S
Sbjct: 129 SLDIEDGKVKGIVTKNGACFTANTIVLATGTYLRSRIIIGEVNYSGGPSGLFPANELSQS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ +++ + K  +Q  DER+IPFSF+ DK+   QI C +T T
Sbjct: 189 LIDVGIKLRRFKTGTPARINKRSVDFSKMVEQPGDERIIPFSFLNDKLEKEQISCYLTYT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH +I ENI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG NT+ +
Sbjct: 249 NEKTHEVIKENIDRSPLYNGTIKSVGPRYCPSIEDKVMRFPDKQQHQIFIEPEGENTNDL 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPEE+Q + ++T+PGLE V I++  YAIEYD I+P +L  +LE K + GLF 
Sbjct: 309 YVGGMSSSLPEEVQIKMLKTVPGLEDVEILKTAYAIEYDCIDPTQLKLSLEFKDVKGLFG 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAA+QG++AGIN+A      + +   R+D YIGV+IDDL +KG  EPYR
Sbjct: 369 AGQFNGSSGYEEAASQGIIAGINAALMVKNKEPLILGRSDGYIGVLIDDLVTKGTNEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R ++F           + LK + +T+
Sbjct: 429 MMTSRAEYRLLLRQDNADLRLTELGHKIGLVDENRYEKFIGRKNAIEEELNRLKKVQITN 488

Query: 486 KNLSST------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           K   +       S+S K   K  + YE +  P+     L ++  D +  +  +I+ + I 
Sbjct: 489 KKEVNDFLEGLGSVSLK---KPISLYELIRRPELDYDKLQTLDIDRKDLAQDIIDEVNIM 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ +  + K  EKR+IP+D DY+S+  L  E  +KLS L+P NL QAS+I 
Sbjct: 546 IKYEGYIEKQLEQVDQFKKFEKRVIPEDIDYNSIKNLRTEAIQKLSKLRPVNLGQASRIS 605

Query: 600 GMTPAALNLLLIYI 613
           G++P+ +++L+IY+
Sbjct: 606 GVSPSDISVLMIYL 619


>gi|24753758|gb|AAN64006.1|AF434658_3 glucose inhibited division protein A [Leptospira interrogans]
          Length = 635

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/622 (44%), Positives = 386/622 (62%), Gaps = 23/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE+DAL
Sbjct: 14  FDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVDAL 73

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q  V 
Sbjct: 74  GGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQDTVE 133

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     L  S
Sbjct: 134 ELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKGLSKS 193

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C IT T
Sbjct: 194 LAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCFITYT 253

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  T  +
Sbjct: 254 NAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYETSEI 313

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI GL+ 
Sbjct: 314 YLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIKGLYH 373

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV +PYR
Sbjct: 374 AGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVEDPYR 433

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL---- 481
           M TSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +    
Sbjct: 434 MLTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQIPLKP 493

Query: 482 ------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                 +L  K +++     K D        FL  P+  I+++  +  +   +S L    
Sbjct: 494 SDEFQNLLDQKGITNYKFGMKLDS-------FLKRPEIKIKDIEFMISEVSSWSDLEKSV 546

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKLSILKPFNL 592
           L++E  Y  Y  R++   + I+++ K L   IP+D +Y  +  L  E  +KL   KP  L
Sbjct: 547 LEMEIKYEGYIKREL---ETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTL 603

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            +AS+I G+ P+ ++L+L +IK
Sbjct: 604 EKASQISGVDPSDVDLILYHIK 625


>gi|288554600|ref|YP_003426535.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pseudofirmus OF4]
 gi|288545760|gb|ADC49643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pseudofirmus OF4]
          Length = 628

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/617 (45%), Positives = 396/617 (64%), Gaps = 10/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAG EA   +A++GA+T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   FDVIVVGAGHAGVEAGLASARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  QENL + QG V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEQENLLLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++    +  R ++VV+TTGT+LRG I +G+L   +G     PS  L   
Sbjct: 128 RLIIEDGECRGVITNTGAEYRSTSVVITTGTYLRGKIILGELAYESGPNNMQPSVQLSYH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R++G TI +DKTE Q  D+    FS+ T K    Q+ C +T T
Sbjct: 188 LQELGFDMVRFKTGTPPRVNGNTIDYDKTEIQPGDDTPRAFSYETTKYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH+II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  V
Sbjct: 248 GEETHQIINNNLSRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRNTTEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + +++IPGLE+V ++RPGYAIEYD I P +L+PTLETKK+ GLF 
Sbjct: 308 YVQGLSTSLPEDVQLKILKSIPGLEQVRMMRPGYAIEYDSIVPTQLWPTLETKKVPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ARK+   +C+   R+++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAARKAKGEECLILDRSEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RLT  G ++G I E R  RF     E    +  L+ +++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEKGYEMGLISEDRFNRFELKKAEIAAEKKRLEKIII-- 485

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQI 538
           K     +   ++ G T      +A   L  P+ +  ++  +   P++ + S  V E+++I
Sbjct: 486 KPSDEVAAVLQEAGATPLKEAVSAAMLLKRPELTYAHVSKLIEAPES-EISDDVGEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  +Q+ +    K  E + IP+D DY ++  L+ E K+KLS ++P ++ QAS++
Sbjct: 545 QVKYEGYIEKQLQQVDRSKKMESKKIPEDLDYHAINGLATEAKQKLSEVRPLSVGQASRV 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA +++LL+Y+++
Sbjct: 605 SGVNPADISILLVYLEQ 621


>gi|217968661|ref|YP_002353895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thauera sp. MZ1T]
 gi|217505988|gb|ACK52999.1| glucose inhibited division protein A [Thauera sp. MZ1T]
          Length = 652

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 294/617 (47%), Positives = 402/617 (65%), Gaps = 8/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA+T L+TH   T+G+MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAATLLLTHNIETLGAMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q        TVVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DLTVVGDRVTGVVTQIGLCFEAPTVVLTAGTFLNGLVHVGMQNYSAGRAGDPPAISLGAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLD +TI +     Q  D+ +  FSF+     + RQ+ C +T+
Sbjct: 187 LKELALPQGRLKTGTPPRLDARTIDFSVMTVQPGDDPVPVFSFLGHASQHPRQLPCWMTQ 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ H IFLEPEGL T  
Sbjct: 247 TNERTHDVIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHNIFLEPEGLETHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLQIVRSIRGLENAHILRPGYAIEYDYFDPRNLKSSLETKSIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVQGREPWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F    +      + LK+    
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTGKGRELGLVDDVRWAAFCAKREAIERGTAQLKAAWAR 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
            + + +     +  K   + +  +E L  P+ S  +L S+   PD R+  + VIE+++I 
Sbjct: 487 PEAIPAEDQQRVLGKALEREQRYFELLRRPETSYASLMSLPGAPDERETDAQVIEQIEIA 546

Query: 540 SSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           + Y  Y  RQ  E  K+++ E  RL P   DY+ +  LS E+++KL+  KP  + QA +I
Sbjct: 547 AKYQGYIDRQQDEVTKQMQAEATRL-PVGLDYAQVRGLSKEVQQKLNQHKPETIGQAGRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
           +G+TPAA++LLL+++K+
Sbjct: 606 QGVTPAAISLLLVWLKR 622


>gi|119896433|ref|YP_931646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azoarcus sp. BH72]
 gi|166222905|sp|A1K1Q4|MNMG_AZOSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119668846|emb|CAL92759.1| glucose inhibited division protein A [Azoarcus sp. BH72]
          Length = 634

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/618 (47%), Positives = 399/618 (64%), Gaps = 10/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRKRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q         VVLT GTFL G+IH+G     AGR GD P+ SL   
Sbjct: 127 DLTVAGDRVTGVVTQIGLRFEAPAVVLTAGTFLNGLIHVGLEHYSAGRAGDPPAISLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLD ++I +     Q  D+ +  FSF+     +  Q+ C +T 
Sbjct: 187 LKELALPQGRLKTGTPPRLDARSIDFSVMTVQPGDDPVPVFSFLGSAAQHPAQLPCWMTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ H IFLEPEGL T  
Sbjct: 247 TNTRTHDVIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHNIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLEIVRSIRGLENAHILRPGYAIEYDYFDPRNLKSSLETKSIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVQGREAWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +      + LK+  L 
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEKGRELGLVDDVRWAAFCAKREAIERETARLKT-SLA 485

Query: 485 SKNLSSTSISFKQDGKT--RTA--YEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQI 538
             +L   +   +  GKT  R A  +E L  P+ +  +L S+   P+  +    V+E+L+I
Sbjct: 486 RPDLIPVADQERVLGKTLEREARYFELLRRPETTYASLMSLPGAPEQPETDPQVVEQLEI 545

Query: 539 ESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            + Y  Y  RQ  E AK+++ E  RL P D DY+ +  LS E+++KL++ KP  + QA +
Sbjct: 546 AAKYQGYIDRQQDEVAKQLQAESTRL-PADLDYAEVRGLSKEVQQKLNLHKPETIGQAGR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I+G+TPAA++LLL+++K+
Sbjct: 605 IQGITPAAISLLLVWLKR 622


>gi|303240050|ref|ZP_07326571.1| glucose inhibited division protein A [Acetivibrio cellulolyticus
           CD2]
 gi|302592319|gb|EFL62046.1| glucose inhibited division protein A [Acetivibrio cellulolyticus
           CD2]
          Length = 629

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/621 (44%), Positives = 392/621 (63%), Gaps = 7/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  +A+LG  TA+      +IG+M CNP IGG  KGHLVREIDAL
Sbjct: 8   YDVVVVGAGHAGCEAALASARLGVKTAVFAINLDSIGNMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLDV Q E+ 
Sbjct: 68  GGEMGKNTDKTFIQSKILNSAKGPAVYSLRAQVDRRSYQIEMKHTLEKQENLDVKQAEII 127

Query: 126 GFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               E    K  I+ +     S+  C  ++LTTGT+L+G I IG +    G  G  P+N 
Sbjct: 128 EILREEKDGKFKITGVKTHTGSIYNCKAIILTTGTYLKGKIIIGDVSYSGGPDGLFPANK 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +   +  RLKTGTPARL+ ++I + K E+Q  D+ ++PFSF  ++I   Q+ C 
Sbjct: 188 LSDSLKEMGIELLRLKTGTPARLNRRSIDFSKMEEQPGDDTIVPFSFENEEIKKEQVSCY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH II EN+  S +Y G I+  GPRYCPSIEDK+VRF E+  HQ+F+EP GLN
Sbjct: 248 LTYTNSETHSIIRENLHRSPLYGGMIEGIGPRYCPSIEDKVVRFAEKESHQVFVEPMGLN 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y  G+ST+LPE++Q + ++T+PGLE V+++R  YAIEYD IN  +L  +LE K I 
Sbjct: 308 TQEMYLQGMSTSLPEDVQIKMMKTLPGLENVSVMRNAYAIEYDGINSTQLNLSLEFKHID 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEA +QG++AGIN+ARK    + +   R+++YIGV+IDDL +KG  
Sbjct: 368 GLFSAGQINGSSGYEEAGSQGIMAGINAARKVKGEEPVILDRSEAYIGVLIDDLVTKGTK 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR+EYR+ LR DNAD RLTPIG + G I E R ++F     E       L+  
Sbjct: 428 EPYRMMTSRSEYRLLLRQDNADIRLTPIGYRAGLISEERYRKFEIKKMEIEEEIKRLERT 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +      +  +  K     ++     + L  P+    +L +I  +  + S  V E++ I
Sbjct: 488 HVPPSEKVNAFLESKNSTPIKSGMKLSDLLKRPELDYDSLGAIDENRPELSFQVREQVSI 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQM++ ++ K  E R + KD DY ++  L  E ++KL+ +KP ++ QAS+I
Sbjct: 548 TIKYEGYIKRQMLQVEQFKKLENRKLSKDLDYIAIQGLRLEARQKLNQVKPESVGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++PA +++LLIY+++N  K
Sbjct: 608 SGVSPADISVLLIYLEQNRRK 628


>gi|294668652|ref|ZP_06733748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309414|gb|EFE50657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 631

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/619 (47%), Positives = 397/619 (64%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGNRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSRLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLHTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYIREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++ PDA+  ++L   V+E++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAQPETALADSVVEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+ LL++++K+
Sbjct: 607 RISGVTPAAVTLLMVHLKR 625


>gi|187930588|ref|YP_001901075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia pickettii 12J]
 gi|238691852|sp|B2UGW0|MNMG_RALPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187727478|gb|ACD28643.1| glucose inhibited division protein A [Ralstonia pickettii 12J]
          Length = 649

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLVVEGDRVIGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSVLEEQPGDLDPVPVFSFMGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLATN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K ISGL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +    D     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEVGRTLGVVDDARWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--------CPDARK--FSS 530
               L    +  +  K   +     + L  P+ + + L  +         P A     + 
Sbjct: 487 NPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLVGMQGGKYALESPLAEDPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP 
Sbjct: 547 QIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|209515787|ref|ZP_03264650.1| glucose inhibited division protein A [Burkholderia sp. H160]
 gi|209503814|gb|EEA03807.1| glucose inhibited division protein A [Burkholderia sp. H160]
          Length = 652

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 388/626 (61%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDYSQLEEQPGDLDPVPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQI+LEPEGL T+
Sbjct: 247 HTNQRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIYLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG +AGIN+       +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGALAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L+S  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETQRLRSTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVI- 533
             K LS   +T++  K      +  + L  P  S   +  +       P+A     +++ 
Sbjct: 487 NPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCGLRNGACGAPEALAEDPVLLA 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  + +E   +P+  DY+ +  LS E ++KL   +P 
Sbjct: 547 QIKEQIEIGVKYQGYIDRQADEIERNEAQENTRLPEGLDYTEVRGLSFEARQKLMQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|145588204|ref|YP_001154801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|189039349|sp|A4SUS3|MNMG_POLSQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145046610|gb|ABP33237.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 639

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/636 (44%), Positives = 397/636 (62%), Gaps = 14/636 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++++DVIV+GGGHAG EAA  +A++G  T LITH    +G+MSCNP+IGG+GKGHLV+EI
Sbjct: 4   SKNFDVIVVGGGHAGTEAALASARMGCDTLLITHSIENLGAMSCNPSIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G M    D AGIQFR+LN  KGPAVR  R Q DR LY+ A++R + +Q NL + Q 
Sbjct: 64  DAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQGDRVLYKAAIRRRLENQPNLSLFQA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + + +  +V Q         VVLT GTFL G IH+G      GR GD  + SL
Sbjct: 124 AVDDLLVKGDEVQGVVTQMGLEFMAKKVVLTAGTFLDGKIHVGLNNYAGGRAGDPAAVSL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIEC 240
                +     GRLKTGTP R+DG+TI +    +Q  D   +P FS++     + +Q+ C
Sbjct: 184 SARLKELKLPQGRLKTGTPPRIDGRTIDFSVMLEQPGDLDPVPVFSYLGRPEQHPKQVPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  RN HQIFLEPEGL
Sbjct: 244 WISHTNEQTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASRNSHQIFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+  YPNGIST+LP ++Q + +R+I GLE   I+RPGYAIEYD+ +P+ L  +LETK I
Sbjct: 304 TTNEFYPNGISTSLPFDVQWELVRSIRGLESAVIVRPGYAIEYDFFDPRHLRHSLETKAI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAAAQG++AGIN+   +   +     R++SYIGV++DDL ++GV
Sbjct: 364 GGLYFAGQINGTTGYEEAAAQGMLAGINAGLAAQGKEAWLPKRSESYIGVLVDDLITRGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT IG  LG + + R + F +  +  +   S LK 
Sbjct: 424 QEPYRMFTSRAEYRLSLREDNADMRLTAIGRDLGLVDDYRWEVFCRKQEAVSRETSRLKD 483

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---------CPDARKF 528
           + +  K+  +   T +  ++        E L  P  + + + ++           D    
Sbjct: 484 IWVGPKHEIAPLVTQLLGQELSHECNLTELLRRPGITYEAITALGNRIWAPESLDDDLGL 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           ++ + ++++I   Y  Y  RQ +E    +  E   +P+  DYS +  LS E+++KL++ K
Sbjct: 544 AAQISDQVEISVKYQGYIERQAVEIARQEHNETFPLPEGLDYSQVLGLSKEVQQKLNLHK 603

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           P  L QA +I G+TPAAL+LLL+++KK   +  E +
Sbjct: 604 PETLGQAGRISGVTPAALSLLLVHLKKGLGRTQETI 639


>gi|187925874|ref|YP_001897516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia phytofirmans PsJN]
 gi|238691589|sp|B2T7L1|MNMG_BURPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187717068|gb|ACD18292.1| glucose inhibited division protein A [Burkholderia phytofirmans
           PsJN]
          Length = 652

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 389/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVINGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDIRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLVI- 533
             K L    +T +  K      +  + L  P  S   +  +       P+A     +++ 
Sbjct: 487 NPKTLPADEATPLLGKPIDHEYSLADLLRRPGVSYDGVCGLRAGACAAPEALAEDDVLLA 546

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGVDYAEVRGLSFEARQKLTQFRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|260771038|ref|ZP_05879966.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio furnissii CIP 102972]
 gi|260613927|gb|EEX39118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio furnissii CIP 102972]
 gi|315178650|gb|ADT85564.1| glucose inhibited division protein A [Vibrio furnissii NCTC 11218]
          Length = 631

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 386/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHTLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAADDLIVENDQVRGVVTQMGLKFRAKAVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAQRLRELPFRVDRLKTGTPPRIDANSVDFSILEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTFETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQDKEGWSPRRDQAYVGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLINDARWARFNQKIEHMETERQRLK 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ +   L S+   A      
Sbjct: 482 ETWMNPNSDGVDALNALLKTPMSREASGE-----DLLRRPEMTYDLLTSLSAFAPALEDR 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY ++  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKAVKGLSNEVVMKLNNAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
           ++  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 SIGIASRISGITPAAISILLVHLKKH 622


>gi|299769491|ref|YP_003731517.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. DR1]
 gi|298699579|gb|ADI90144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. DR1]
          Length = 626

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTVGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFGQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|50085525|ref|YP_047035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ADP1]
 gi|81170512|sp|Q6F9Q1|MNMG_ACIAD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49531501|emb|CAG69213.1| glucose-inhibited division protein A [Acinetobacter sp. ADP1]
          Length = 626

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/617 (46%), Positives = 388/617 (62%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRHTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLEKSSGGRAGDPPSIALS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVSCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++      + L  L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVETETARLAHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S+ V ++++I 
Sbjct: 485 AAPNNPMGKQFVEMTGADLSKECSAIDLLKRPNINFTQIAELT--GSQVSTQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QA +I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDIVSGLSREITQKLKTVRPETLAQAHRIP 602

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ L++I I+KN
Sbjct: 603 GVTPAAVQLVMITIRKN 619


>gi|256829824|ref|YP_003158552.1| glucose inhibited division protein A [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579000|gb|ACU90136.1| glucose inhibited division protein A [Desulfomicrobium baculatum
           DSM 4028]
          Length = 626

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/618 (45%), Positives = 384/618 (62%), Gaps = 5/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++D+IV+G GHAGCEAA  AA +G  T L+T     IG +SCNPAIGGL KGH+V+E
Sbjct: 6   VPETFDIIVVGAGHAGCEAAMAAAHMGMQTLLLTINADRIGHLSCNPAIGGLAKGHMVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG+ AD AGIQFR+LN +KGPAVR  R Q DR  Y   +Q++I +  NL V Q
Sbjct: 66  IDALGGMMGKWADQAGIQFRILNTRKGPAVRSSRAQIDRAEYVKVVQQDIFTCPNLFVRQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              A    E   ++ +V      I C   +LTTGTFL+G+IH+G      GR GD  S+ 
Sbjct: 126 ETAASLTVEDGRVTGVVTTLGETIPCRAALLTTGTFLQGLIHVGLNNFSGGRYGDPASSG 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L     +  F+ GRLKTGT  RL   ++ +   E+Q  D    PFSF +  I  +Q+ C 
Sbjct: 186 LSPRLRELGFELGRLKTGTVPRLLKSSVDYSVMEEQAGDNPPRPFSFDSPGIRLQQLPCF 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T   TH II      S +++G IK  G RYCPSIEDKI RF E++ HQIF+EPEGL 
Sbjct: 246 VTYTTERTHEIIRTGFDRSPMFTGVIKGTGARYCPSIEDKIARFPEKDRHQIFVEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  VYPNGI T+LP +IQ   + +IPGLEK  IIRPGYAIEYDY+ P +L PTLE+K + 
Sbjct: 306 SHEVYPNGIPTSLPLDIQKALVASIPGLEKAQIIRPGYAIEYDYVPPTQLRPTLESKLVR 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL++AGQINGT+GYEEAA QGL A IN+         +  +R+ +YI V++DDL +KG L
Sbjct: 366 GLYMAGQINGTSGYEEAAGQGLWAAINAVLALRGEPELILTRSQAYIAVLVDDLVTKGTL 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT IG  LG + + R +RF +     N + + +++L
Sbjct: 426 EPYRMFTSRAEHRLLLREDNADERLTAIGRDLGLVDDSRWQRFTRKQTAVNEIMAGMEAL 485

Query: 482 VL----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +     ++NL   ++      K  +  E L  P+ +I  L  + P+   F    +E  +
Sbjct: 486 RVRPDAATRNLVE-AMGGTIPQKAVSLKELLRQPELTIDMLTPLWPELENFDGEALEEAE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  RQ       +  E+  +P+D +Y+ +P LS E+ EKL+ ++P  L QA +
Sbjct: 545 IKTKYEGYLRRQQELVDRFEKMEQTTLPEDMNYTGIPGLSREVVEKLTRVQPRTLGQAGR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAAL+ L I +KK
Sbjct: 605 ISGITPAALSCLEIQLKK 622


>gi|239637282|ref|ZP_04678269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus warneri L37603]
 gi|239597119|gb|EEQ79629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus warneri L37603]
          Length = 625

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/619 (44%), Positives = 393/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I  ++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKNVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDDEVKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSVTLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++     F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DNLRGLGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSYETTEYILEQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A K    +    SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGKVLGKEEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I   R  +F    Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISNERYAQFNHKRQQIKDEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + + + I      K +    A + L  P+ +   +  I  +  +  S V E+++I++
Sbjct: 483 KPNDHTQSVIEANGGSKLKDGILAIDLLRRPEMTYDTILEILEEDHQLPSEVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQQVEKVKRMEQKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|330685268|gb|EGG96929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU121]
          Length = 625

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/619 (44%), Positives = 394/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   QEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I  ++NLD++QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKNVIEDEDNLDIMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +L 
Sbjct: 123 VDELIIEDDEVKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSVTLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++     F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DNLRGLGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A K    +    SR+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGIMAGINAAGKVLGKEEKILSRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I + R  +F    Q+       L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYAQFNHKRQQIKDEIQRLTDIRI 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + + + I      K +    A + L  P+ +   +  I  +  +  S V E+++I++
Sbjct: 483 KPNDHTQSVIEANGGSKLKDGILAIDLLRRPEMTYDTILEILEEDHQLPSEVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYINKSLQKVEKVKRMEQKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKLQ 621


>gi|94676767|ref|YP_588617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166222910|sp|Q1LTU7|MNMG_BAUCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94219917|gb|ABF14076.1| glucose inhibited division protein A [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 631

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 394/617 (63%), Gaps = 21/617 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  +DVI+IGGGHAG EAA  +AK+G +T L+TH   TIG MSCNPAIGG+GKGHL +E+
Sbjct: 4   NYFFDVIIIGGGHAGTEAAVASAKIGCNTLLLTHNIKTIGEMSCNPAIGGIGKGHLAKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+M +  DAAGIQFR+LN  KGPAVR  R QADR LYR A+   + +  NL V+Q 
Sbjct: 64  DAMGGIMAKAIDAAGIQFRILNASKGPAVRATRAQADRYLYRKAVYNMLKNTNNLLVLQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N +  ++ +       ++V+LT GTFL G IHIG    P GR GD  S SL
Sbjct: 124 FVENLIIKNNNVIGVISKAKDKFYANSVILTVGTFLDGKIHIGLNSYPGGRTGDLSSISL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIEC 240
            ++  K  F   RLKTGTP R+   T+ ++   KQ +D  L  FSF T  ++   RQI C
Sbjct: 184 SSNLRKLPFRVKRLKTGTPPRIHASTVNFNILTKQESDNPLPVFSF-TGSVSEHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N+ +S IY+ +I+  GPRYCPSIEDKI+ F  R+ HQIFLEPEGL
Sbjct: 243 YITYTNKNTHDIIYNNLHYSPIYTKNIEGIGPRYCPSIEDKIIHFAHRDSHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++++YPNGIST+LP +IQ + +++I GLEK +II+PGYAIEYD+ +P++L  TLE+K I
Sbjct: 303 MSNIIYPNGISTSLPVDIQLKIVQSIEGLEKASIIQPGYAIEYDFFDPRDLKNTLESKII 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGL+AGIN+A+K  + D    +R+ +YIGV+IDDL  +G+
Sbjct: 363 NGLFFAGQINGTTGYEEAAAQGLIAGINAAKKVLEQDSWYPNRSQAYIGVLIDDLCLQGI 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT I  KLG + E    +F   +      R  L++
Sbjct: 423 EEPYRMFTSRAEYRLSLREDNADLRLTEIARKLGLVNENHWHKFCIKLDYIERERQRLRN 482

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDF---SIQNLFSICPDARKFS 529
           L +            L    I  K +G+     E L  P+    ++ NL    P  +   
Sbjct: 483 LWVQPNTIGIQDLNQLLKKPIMCKINGE-----ELLRRPEINYKTLTNLSFFQPTLKNIQ 537

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           +   E+++I+  Y  Y  +Q  +       E+ L+PK+ D+S +  LSNE   +L+  +P
Sbjct: 538 AA--EQIEIQIKYEGYIAQQQEQILRQLNYEQTLLPKNMDFSLVTGLSNEAISQLNNHQP 595

Query: 590 FNLLQASKIEGMTPAAL 606
           +++ QA +I G+TP A+
Sbjct: 596 YSIGQALRISGITPIAI 612


>gi|194016647|ref|ZP_03055261.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus ATCC 7061]
 gi|194012120|gb|EDW21688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus ATCC 7061]
          Length = 628

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/619 (44%), Positives = 396/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKKTMENEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +    +V Q  +  R  +VVLTTGTFL+G I +G L   +G     PS  L +
Sbjct: 127 DHLIVEDDECKGVVTQTGANYRAKSVVLTTGTFLKGRIILGDLSYSSGPNNQQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLAELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+LETH+II EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSLETHQIIDENLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKISGL+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKISGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFAKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT +G  +G I + R     QK+ A   ++      ++K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYHIGLISQERFQAYQQKKEAIEAEKKRLYSVIIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + S   S  +DG    A + +  P+ + +++ ++ P   +  S V E+++I+
Sbjct: 487 PTAETQEFIRSLGGSELKDGI--RASDLMKRPEMNYESVVTLAPAETQLPSDVCEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E K+KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEAKQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|149194011|ref|ZP_01871109.1| Glucose-inhibited division protein A subfamily [Caminibacter
           mediatlanticus TB-2]
 gi|149135964|gb|EDM24442.1| Glucose-inhibited division protein A subfamily [Caminibacter
           mediatlanticus TB-2]
          Length = 623

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/615 (46%), Positives = 383/615 (62%), Gaps = 5/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G +T L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   KEFDVIVVGGGHAGIEAANAAARMGKNTLLLTMLVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG   D AGIQFRVLN  +GPAVRG R Q D + YR+ M+  IL+  NL V Q  
Sbjct: 62  ALGGLMGLATDNAGIQFRVLNENRGPAVRGSRAQIDMDRYRIWMRNAILNTPNLTVAQEI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  +     +  RC  ++LTTGTF+RG++H G +KI  GR  + P+  + 
Sbjct: 122 VDEILVKNGKVYGVKTNLLNEYRCKALILTTGTFMRGLMHFGPVKIEGGRFHELPAKKIS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S     F   RLKTGT AR+D +TI + K E Q  DE   PFSF TDK T   +Q+ C 
Sbjct: 182 KSLENLGFKLERLKTGTTARIDARTIDFSKMEIQPGDENPKPFSFRTDKKTFNPKQLPCF 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N   + +++G I+  GPRYCPSIEDK+ +F ++  H +F+EP+ L 
Sbjct: 242 ITYTNETTHDIIKGNFHRAPLFTGQIEGIGPRYCPSIEDKLNKFPDKERHHVFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q  FI TIPGLE   I+R GYAIEYD+I P  L  +LET+ I 
Sbjct: 302 ATEYYLNGLSTSLPMDVQEDFIHTIPGLENAKIVRFGYAIEYDFIQPTNLKHSLETRAIE 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+A K ++ + +   R ++YIGV+IDDL +KG  
Sbjct: 362 GLFFAGQINGTTGYEEAAAQGIMAGINAALKIDEKEPLILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+ LR DNA  RL   G KLG + E   KR  K  +E N    ++   
Sbjct: 422 EPYRMFTSRSEYRLLLREDNAILRLGDYGYKLGLLDEETYKRIEKLKEEINRGMKIVNET 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +T     +  +    + K +   E    +    F+   LF + P+ + FS   IE++ I
Sbjct: 482 FVTPNKEINVLLESLGEEKIQNKMEIRKIIGRHTFNKDKLFKLLPELKSFSDEAIEQILI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ES Y  Y  +Q     ++K      IP+DF+Y  +P LS E+ EKL   +P  L QAS+I
Sbjct: 542 ESRYHHYIEKQKQHIDKMKEMLSVKIPEDFEYKGIPGLSREIVEKLEKYRPATLFQASEI 601

Query: 599 EGMTPAALNLLLIYI 613
            G+TPAA++++ +YI
Sbjct: 602 SGVTPAAIDIIHMYI 616


>gi|87311176|ref|ZP_01093299.1| glucose inhibited division protein A (GIDA) [Blastopirellula marina
           DSM 3645]
 gi|87286084|gb|EAQ77995.1| glucose inhibited division protein A (GIDA) [Blastopirellula marina
           DSM 3645]
          Length = 610

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/614 (46%), Positives = 388/614 (63%), Gaps = 22/614 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV++IG GHAG EAA  AA+LGA TAL+T    T+  MSCNPAIGG+ KG +VRE+DAL
Sbjct: 8   YDVLIIGAGHAGTEAALAAARLGAKTALLTTNLDTVAQMSCNPAIGGVAKGQIVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MGR  D  GIQFR+LN +KGPA+ GPR QAD++ Y+  ++  +  Q NL + Q  VA
Sbjct: 68  GGVMGRAIDETGIQFRLLNRRKGPAMHGPRAQADKKAYQNLVKLMVEDQPNLSLRQEIVA 127

Query: 126 GFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              TEK      ++ +++    + R   VVLTTGTFL  ++H G+ K P GR G+  S+ 
Sbjct: 128 DLLTEKVDGRQQVTGVLVHGGVIYRAPRVVLTTGTFLSAIMHTGEAKTPGGRGGEGTSSG 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  +  +  F   R KTGTPARL+  TI +   E+Q  D++  PFS++TD +T  Q+ C 
Sbjct: 188 ISQALKRLQFRVERFKTGTPARLNANTIDYAAVEEQPGDDQPQPFSYLTDGLTLEQVPCH 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN   H +I  N+  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEG  
Sbjct: 248 ITHTNEAVHELIRANLHRAPMYSGQIQGSGPRYCPSIEDKVVRFSDKTQHQLFLEPEGRR 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NGIST+LP ++Q   ++ IPGLEK  I+R GYA+EYDY +P +L PTLETK + 
Sbjct: 308 TREVYVNGISTSLPRDVQDGMLKLIPGLEKAEIMRYGYAVEYDYCSPDQLRPTLETKDVD 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG N+A  +     +  SR  +YIGV+IDDL + GV 
Sbjct: 368 GLYFAGQINGTTGYEEAAAQGLIAGANAALAAANKPPLILSRDQAYIGVLIDDLVTCGVD 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLTPI    G I   R  R  +        R L    
Sbjct: 428 EPYRMFTSRAEFRLMLRQDNADRRLTPIAHACGMIDSDRWNRLEQKETAITAARKL---- 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT+  +   S+            ++L  P+ + + + +  P   +FS+ V E++  +  
Sbjct: 484 -LTTGRIEGASLE-----------KYLKRPEATWEMMVAADPQLAQFSAAVAEQVTYDIK 531

Query: 542 YAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           YA Y  RQ  E A++ +  +KR IP  FDY+ L  +  E +EKL+  +P  L QA +I G
Sbjct: 532 YAGYVVRQQTEVARQKRLADKR-IPDSFDYTGLSQMRAEAREKLAKHRPGTLAQAERISG 590

Query: 601 MTPAALNLLLIYIK 614
           +TPA + LLL+Y++
Sbjct: 591 ITPADIALLLVYLE 604


>gi|161594059|ref|NP_900331.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chromobacterium violaceum ATCC 12472]
 gi|205831545|sp|Q7P0A6|MNMG_CHRVO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 632

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/620 (45%), Positives = 392/620 (63%), Gaps = 10/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   SFDVIVVGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDIGGIQFRTLNASKGPAVRATRAQADRILYKAAIREMLENQPNLTLFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   +       R  TVVLT GTFL G IH+G      GR GD  +++L  
Sbjct: 126 DDLLIEGDRVVGAITAIGITFRAKTVVLTAGTFLSGKIHVGLENYTGGRAGDQAASTLGE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              + +   GRLKTGTP R+DG+++ +   E+Q  D     FS+   +  + +Q+ C IT
Sbjct: 186 RLRELNLPVGRLKTGTPPRIDGRSVDFSVMEEQPGDTPEPVFSYRGKRAMHPKQLPCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T 
Sbjct: 246 HTNERTHDIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP +IQ   +R+I G+E  +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 306 EFYPNGISTSLPFDIQLAAVRSIRGMENAHILRPGYAIEYDYFDPRGLKASLETKAIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+   + + +  C  R ++Y+GV++DDL +KGV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGLFAREQEAWCPRRDEAYLGVLVDDLITKGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT +G KLG +G+ +   F +        ++ L++  L
Sbjct: 426 YRMFTSRAEFRLQLREDNADLRLTEMGRKLGVVGDEQWDAFCRKRDAVEAEKARLQATWL 485

Query: 484 TSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
               L+  +   +  GK      T  + L  P+   + L ++      A + +  V E++
Sbjct: 486 HPSKLADPAALARVLGKPIEREYTLQDLLKRPNVPYRELMTVPEAADGAPELADEVAEQV 545

Query: 537 QIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +I+  Y  Y  RQ  E A+    E+ RL P D DY  +  LS E+++KL+  +P  L QA
Sbjct: 546 EIQVKYQGYINRQNEELARRDNLEDIRL-PGDIDYGLVKGLSKEVQQKLNQQRPETLGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I+G+TPAA+ LL++++++
Sbjct: 605 SRIQGITPAAVALLMVHLRR 624


>gi|327438168|dbj|BAK14533.1| NAD/FAD-utilizing enzyme apparently [Solibacillus silvestris
           StLB046]
          Length = 631

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/619 (45%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG E+A  AAK+GA T ++T     I  M CNP++GG  KG +VREIDA
Sbjct: 9   NFDVIVVGAGHAGVESAYAAAKMGAKTLMLTINLDMIAFMPCNPSVGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGR+ D   IQ R+LN  KGPAVR  R QAD+  Y+  M+R +  +ENL + Q  V
Sbjct: 69  LGGLMGRIIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKRVLEEEENLQIHQAMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  ++ R   V++TTGTFLRG I +G LK  +G     PS  L +
Sbjct: 129 DELIVEDGEVKGVITQVGAIYRAPAVIITTGTFLRGEIILGNLKYSSGPNNQQPSIKLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLIRFKTGTPPRVNNRTIDYSKTEIQPGDDVPRAFSFETTEYIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR I EN+  S ++SG IK  GPRYCPSIEDK+ RF ++  HQIFLEPEG NT  
Sbjct: 249 TTEETHRTIEENLHLSPMFSGMIKGTGPRYCPSIEDKVTRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + I +IPGLE   ++R GYAIEYD + P +L+PTLETKKI GL+
Sbjct: 309 VYVQGLSTSLPEHVQKKLIASIPGLENAEMMRAGYAIEYDSVIPTQLWPTLETKKIQGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+A K    + I   R+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAGQGLMAGMNAAAKVLGREEIILDRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRS-LLK 479
           R+ TSRAEYR+ LR DNAD RLT IG K G I E R  +F    A+  QE   LR  ++K
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLTEIGYKAGMITEERYVKFQHKKAQIEQEIARLREIIIK 488

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + +   +  +DG  R A + L   + +   + S+ P   + S  V E+++I+
Sbjct: 489 PNATTQEVIRNAGGAELKDG-IRGA-DLLKRTEMTYDLVASLTPSEIELSDDVKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP++ DY ++P+L+ E + KL  ++P ++ QAS+I 
Sbjct: 547 LKYEGYIQKALQQVEKMKKLEDKKIPENIDYDAIPSLATEARMKLKSVQPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADVSILLVYIEQGKI 625


>gi|262376199|ref|ZP_06069429.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter lwoffii SH145]
 gi|262308800|gb|EEY89933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter lwoffii SH145]
          Length = 626

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/617 (46%), Positives = 386/617 (62%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLT GTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTAGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPTMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNERTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R ++Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDEAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG ++G + + R   + + ++        L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTAIGREMGLVDDARWAVYCEKMEAVEKETGRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELT--NSEVSPFVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DFDY  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETRIPADFDYDIVSGLSREITLKLKDVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ L++I I+KN
Sbjct: 603 GVTPAAVQLVMITIRKN 619


>gi|319790632|ref|YP_004152265.1| glucose inhibited division protein A [Thermovibrio ammonificans
           HB-1]
 gi|317115134|gb|ADU97624.1| glucose inhibited division protein A [Thermovibrio ammonificans
           HB-1]
          Length = 635

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 300/629 (47%), Positives = 391/629 (62%), Gaps = 19/629 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIV+G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KG +VR
Sbjct: 1   MWDEVFDVIVVGAGHAGCEAALAAARMGCKTALFTINVDRIAEMSCNPAIGGVAKGTVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR+LN KKGPAVR PR QAD+E YR  M+R I +   L VI
Sbjct: 61  EIDALGGEMAKNIDETGIQFRILNKKKGPAVRAPRAQADKEAYRNRMRRVIENTPGLQVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +V    +      VV+T GTFLRG I IG  +   GRM + P+N
Sbjct: 121 QQTVDDIVVENGTVKGVVTHIGARYGAKAVVVTAGTFLRGKIFIGFNEFEGGRMWEPPAN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L   + K  F   RLKTGTP R+DG+TI + K E+Q  DE    FS+ T+     QI C
Sbjct: 181 KLSLFYEKHGFRVARLKTGTPTRIDGRTIDFSKMERQDGDEPPPFFSYWTEPREAEQIPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            +T T  ETHRII EN+  S +Y G+ K     G RYCPSIEDKIV+F ++  H +F+EP
Sbjct: 241 WLTYTTPETHRIIRENLHRSPMY-GECKLISGVGVRYCPSIEDKIVKFPDKERHHVFVEP 299

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT   YPNG ST+LP ++Q   IR+IPGLE   IIRP YAIEYD+I+P+ L+PTLET
Sbjct: 300 EGRNTVEFYPNGTSTSLPYDVQVAIIRSIPGLENAEIIRPAYAIEYDFIDPRHLYPTLET 359

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLT 416
           K I GLF AGQINGTTGYEEAA QG+VAGIN+A  +  K +     R ++YIGVMIDDL 
Sbjct: 360 KLIKGLFNAGQINGTTGYEEAAGQGIVAGINAALYALGKEERFILGRDEAYIGVMIDDLV 419

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYR+FTSRAEYR+ LR DNAD RL   G K G +   + +R  +  +       
Sbjct: 420 NKGVREPYRLFTSRAEYRLLLRYDNADYRLAKYGYKFGLLTREQYERVKRKYETVKVFIE 479

Query: 477 LLKSLVLTSKNL-----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            LK + L  + +     S  S   K+   +++AYE L  P+  ++ +  + P     +  
Sbjct: 480 KLKEVKLRPEQVNPILESEGSTPIKE---SKSAYELLKRPEVKLEEILKLIPFELNVEDE 536

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           K    ++E ++IE  Y  Y  RQ+ E K+ +  E   IP+DFDY  +P +S E ++KL  
Sbjct: 537 KLLREILEEVEIEVKYEGYIKRQLEEIKKFRKLENIKIPEDFDYDIVP-ISVEERQKLKE 595

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +KP  L QA+++EG+ PA++ +L IYI+K
Sbjct: 596 MKPVTLGQAARLEGIRPASIPVLAIYIQK 624


>gi|326390369|ref|ZP_08211928.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993646|gb|EGD52079.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 633

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/617 (45%), Positives = 391/617 (63%), Gaps = 10/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVVVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+ 
Sbjct: 68  GGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFNSGPSGLFPANELSET 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  +
Sbjct: 248 NKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKLLNEPPVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT +G K+G + E R ++F  K IQ    ++ L   +V  
Sbjct: 428 MLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMQRLPGVMVRP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
           S+ +++  IS    G T        Y  L  P+   ++   +  D        V E++ I
Sbjct: 488 SEEVNNFLIS---KGSTPLVTGIDLYTLLKRPEIDYKSTKFLDKDRPHDILDSVAEQIDI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ + +  K  E + IP+D DY  +  LSNE KEKL+ ++P ++ QAS+I
Sbjct: 545 NIKYEGYIIKQLRQVEHFKALENKKIPEDIDYYQIHGLSNEAKEKLTKIRPTSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA +++LLIY+++
Sbjct: 605 SGVSPADISVLLIYMQQ 621


>gi|58579850|ref|YP_198866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84621864|ref|YP_449236.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75437186|sp|Q5H6D9|MNMG_XANOR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123523557|sp|Q2P915|MNMG_XANOM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58424444|gb|AAW73481.1| glucose inhibited division protein A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365804|dbj|BAE66962.1| glucose inhibited division protein A [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 634

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/625 (45%), Positives = 387/625 (61%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGAHTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q        +VVLT GTFL G IH+G  +  AGR+GD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRLGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR  + L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVHGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   Y  Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYTGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLEHVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|302342875|ref|YP_003807404.1| glucose inhibited division protein A [Desulfarculus baarsii DSM
           2075]
 gi|301639488|gb|ADK84810.1| glucose inhibited division protein A [Desulfarculus baarsii DSM
           2075]
          Length = 630

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/616 (44%), Positives = 381/616 (61%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+GGGHAGCEAA  AA++G  T LIT     + ++SCNPA+GGL KGHLVREIDAL
Sbjct: 9   FEVIVVGGGHAGCEAALAAARMGRQTLLITINLEHLAALSCNPAVGGLAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KGPAV   R Q D + Y   M++ IL+Q  L V+  +  
Sbjct: 69  GGEMAKNTDATGIQFRLLNQGKGPAVWSSRAQVDMDRYPRRMRKVILNQPRLWVLDAKAR 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   +   +  ++      +    VVLTTGTFLRG+IH+G    PAGRMGD  +N+L + 
Sbjct: 129 GLIVQSGRVGGVITDRGQSVSARAVVLTTGTFLRGLIHVGLKNWPAGRMGDPAANALSDQ 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RLD +++       Q  DE    FSF++   T  Q  C IT T
Sbjct: 189 LRALGLNLGRLKTGTCPRLDARSVDLASLPAQPGDETPRMFSFLSQGPTLEQRPCWITHT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              THRII   +  S +Y+G I   G RYCPSIEDK+VRF +R  HQIFLEP+GL++ ++
Sbjct: 249 TERTHRIIRGGLHESPMYAGVITGVGARYCPSIEDKVVRFPQRESHQIFLEPQGLDSGLI 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP  +Q   + ++PG E   I+RPGYAIEYDY +P++L PTLE+K   GL+L
Sbjct: 309 YPNGIPTSLPLAVQEAMVHSLPGCENAFIVRPGYAIEYDYADPQDLKPTLESKIAPGLYL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL AGIN+A            R+ +Y+ V++DDL +KG  EPYR
Sbjct: 369 AGQINGTSGYEEAAAQGLWAGINAALAVRGEGAFAPDRSQAYMAVLVDDLITKGTREPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+SLR DNAD RLT +G  +G + + R   F+         R LL ++ +  
Sbjct: 429 MFTSRAEYRLSLREDNADLRLTELGRAVGLVDDERWAAFSAKQAALGQARQLLDAVRVNP 488

Query: 486 KNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQIE 539
                 ++S    G   +  +A + L  P   +  L  + P     ++L   V E+L+IE
Sbjct: 489 SRQVLEALSELDTGALSRPLSAAQVLRRPGMDLAMLARLDPALEPLTTLPPEVAEQLRIE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           +SYA Y  ++  + +  +  E ++IP + DY+ +P LS E+ EKL+ ++P N+ QA +I 
Sbjct: 549 ASYAGYVEQERQQVELFRAREAQVIPPELDYAQIPGLSREVVEKLARVRPANIGQAGRIS 608

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAAL ++ ++  +
Sbjct: 609 GVTPAALAIVSLHATR 624


>gi|330831716|ref|YP_004394668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Aeromonas veronii B565]
 gi|328806852|gb|AEB52051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Aeromonas veronii B565]
          Length = 636

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 394/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLVRE+
Sbjct: 11  HEQFDVIVVGGGHAGTEAATAAARMGMNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVREV 70

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q 
Sbjct: 71  DALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQQ 130

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +L
Sbjct: 131 ACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIAL 190

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +      RLKTGTP R+D +++ +   ++Q  D+    FSF+ +   + RQ+ C 
Sbjct: 191 AQRLRELPLRIDRLKTGTPPRIDARSVDFSVMQEQHGDDPRPVFSFIGNASQHPRQVPCY 250

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL 
Sbjct: 251 VTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGLT 310

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I 
Sbjct: 311 THELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCIP 370

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R  +Y+GVM+DDL++ G  
Sbjct: 371 NLFFAGQINGTTGYEEAAAQGLMAGLNAALRAQDKDPWNPRRDQAYMGVMMDDLSTLGTR 430

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S 
Sbjct: 431 EPYRMFTSRAEYRLLLREDNADIRLTAIGRELGLVDDERWSKFNAKMEQVELERQRMRST 490

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +  ++ S  +++   +    + ++  E L  P+ +   L  I       +     E+++
Sbjct: 491 WIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMDIEGVGPSVTDPAAAEQVE 550

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E ++    E  L+P D DY  +  LSNE+K KL+  KP  + QAS+
Sbjct: 551 IQIKYAGYIERQHDEVEKQLRNENTLLPLDLDYREVNGLSNEVKAKLNDAKPQTIGQASR 610

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK+
Sbjct: 611 ISGITPAAISILLVHLKKH 629


>gi|325122733|gb|ADY82256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 626

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQVNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTSIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNITFGQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|115629241|ref|XP_783517.2| PREDICTED: similar to MGC139179 protein [Strongylocentrotus
           purpuratus]
 gi|115945892|ref|XP_001186832.1| PREDICTED: similar to MGC139179 protein [Strongylocentrotus
           purpuratus]
          Length = 1272

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 291/637 (45%), Positives = 402/637 (63%), Gaps = 31/637 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA V+A++GA T L+THK  TIG MSCNP+ GG+GKGHL+REIDAL
Sbjct: 73  YDVIVVGGGHAGCEAAGVSARMGAQTLLLTHKIETIGVMSCNPSFGGIGKGHLMREIDAL 132

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV------ 119
           DG+  R+ D AGIQ++VLN +KGPAV G R Q DR+ Y+  MQ EIL+  NL V      
Sbjct: 133 DGISARLCDKAGIQYKVLNRRKGPAVWGLRAQIDRDQYQSYMQDEILNTPNLTVRAAPVE 192

Query: 120 ---IQGEVA----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
              IQGE A    G + +K + S +V+++   IR S VV+TTGTFLRG IH+G  + PAG
Sbjct: 193 DLIIQGEDAAEMDGCHGDKPVCSGVVLENGETIRSSAVVITTGTFLRGEIHLGVERRPAG 252

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+GD PS  L        F  GRLKTGTP RLDG+TI + +      D   IPFSFMTD+
Sbjct: 253 RIGDEPSVGLAKRIEDAGFTLGRLKTGTPPRLDGRTIDYSELTPNHGDMPPIPFSFMTDR 312

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T +N E HRI ++N +H  ++  + ++ GPRY   I   I+    R 
Sbjct: 313 VAIQPEDQVICHLTHSNHEVHRICIDN-QHLNVHVQE-EANGPRYETFILKAILVLPNRL 370

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I   P+GLNTD+VY  G S  LP ++Q + + +I GLE   + +PGY +EYDY++P+
Sbjct: 371 -HGIPDRPKGLNTDIVYMQGFSVTLPPDLQEKCVNSIKGLENATMTKPGYGVEYDYVDPR 429

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           E+ P+LET KI  LF AGQINGTTGYEEAAAQG++AGIN+  K+ +      SRT+ YIG
Sbjct: 430 EIKPSLETLKIPRLFFAGQINGTTGYEEAAAQGIIAGINAVLKARRRPPFTISRTEGYIG 489

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDLT++G  EPYRMFTSR E+R++LRPDNAD RLT  G   GC+ + R +   +  +
Sbjct: 490 VLIDDLTTRGTSEPYRMFTSRTEFRMTLRPDNADLRLTHRGFAAGCVSQERFEHTMETRK 549

Query: 470 EYNFLRSLLKSLVLTSKNLS--------STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
                +SLL+S+ L  +            ++    +  +  +A + L +P  ++ +L + 
Sbjct: 550 ALEESKSLLRSVKLHRQEWRRHLENHGVQSAFGNSKSPEKMSAMDILQFPGLTVHHLAAA 609

Query: 522 CPD---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
            P    AR     + ERL+IE  YA    +Q     E++ +E+  +P+D DY+SL  LS 
Sbjct: 610 LPSESLARLEDHRLAERLKIEGIYAPLIPQQEAAIAEVQADEELELPEDLDYTSL-KLST 668

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           E   KL+  +P  +  AS++EG+TPAA+  LL ++K+
Sbjct: 669 EAIYKLTQARPTTIGAASRLEGVTPAAVLRLLYHVKR 705


>gi|323527852|ref|YP_004230005.1| glucose inhibited division protein A [Burkholderia sp. CCGE1001]
 gi|323384854|gb|ADX56945.1| glucose inhibited division protein A [Burkholderia sp. CCGE1001]
          Length = 652

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 389/626 (62%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLMVEGDRVVGAVTQVGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQMPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK ISGL
Sbjct: 307 EFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG +LG +G+ R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEIGRELGVVGDVRWDAFSRKRDAVSRETERLRTTWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS----------ICPDARKFSS 530
             K LS   +T++  K      +  + L  P  S   + +          I  +     +
Sbjct: 487 NPKTLSAEEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRGGACGAPEILAEDEVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +  +  E   +P   DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPDGLDYAEVRGLSFEARQKLTQYRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|188574491|ref|YP_001911420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518943|gb|ACD56888.1| glucose-inhibited division protein A [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 634

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/625 (45%), Positives = 387/625 (61%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q        +VVLT GTFL G IH+G  +  AGR+GD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRLGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR  + L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVHGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSS 530
           +L  T  N     ++        +     + +  P+ +   L  +        DA+    
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQ---- 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   Y  Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P 
Sbjct: 544 -VAEQVEISVKYTGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLEHVRPQ 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QA +I GMTPAA++LLL+++++
Sbjct: 603 HIGQAQRIPGMTPAAISLLLVHLER 627


>gi|293609470|ref|ZP_06691772.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827922|gb|EFF86285.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 626

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQVNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDSKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTSIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNITFGQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|94496562|ref|ZP_01303138.1| glucose inhibited division protein A [Sphingomonas sp. SKA58]
 gi|94423922|gb|EAT08947.1| glucose inhibited division protein A [Sphingomonas sp. SKA58]
          Length = 616

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/617 (47%), Positives = 401/617 (64%), Gaps = 7/617 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+GGGHAGCEAAA AA+ GA+ AL+T   ST+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHKPYDVIVVGGGHAGCEAAAAAARKGAAVALLTFDRSTVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLM R ADA+ I +R+LN  KG AV+GPR QADR  YR A+ R I   + L +I+
Sbjct: 61  VDALDGLMARAADASAIHYRMLNSSKGAAVQGPRVQADRVRYRAAIHRLIDDLDGLTIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      +   ++ + + D  M+  S +VL TGTFL G +  G  +   GR+G+  + S
Sbjct: 121 GEAQELLLDAGQVTGVRLADGRMLNSSAIVLATGTFLGGKLFCGDTQDVGGRVGERAATS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D    RLKTGTP R+DG+TI W + E Q +D+     S +T      Q+ C 
Sbjct: 181 LGTQLRLLDLPIARLKTGTPPRIDGRTIDWARLETQPSDDDGWTMSPVTPNRILPQLACA 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  THRII E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTNDRTHRIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVLRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           + +VYPNGIST+LP +IQ   IR++ GLE   I+  GYA+EYD+++P+ L   LE + +S
Sbjct: 301 SPLVYPNGISTSLPADIQRDMIRSMVGLECAEIVVAGYAVEYDHVDPRALTSALELRAVS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGLVAG N+A  +     +   R  SYIGVMIDDL  +GV 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLVAGANAAAHALGQSPMILDRASSYIGVMIDDLVLQGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR+ LR DNA+ RL  +G+  G IG  R +R    +Q  +  RS +++ 
Sbjct: 421 EPYRMLTARAEYRLRLRADNAETRLGSLGLAHGLIGPDRARR----LQLRSDWRSRVETA 476

Query: 482 V---LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           +   +T+  ++      +QDG  RT  E+  +P+   + L ++ P  +     V   L  
Sbjct: 477 LARSMTASEMAKAGAVVRQDGARRTLAEWARFPEVPRRLLMTLAPSLQDAPDDVRNELLE 536

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E   ++ +E+ +I  DFD+ S+  LS+E+ E+L   +P  L  A +I
Sbjct: 537 DAHYAPYLLRQEAEVAALRRDERVIIAADFDFRSVGGLSSEMIERLEAARPDTLAAAGRI 596

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAAL  +L++ ++
Sbjct: 597 RGITPAALAAILVHARR 613


>gi|319957596|ref|YP_004168859.1| glucose inhibited division protein a [Nitratifractor salsuginis DSM
           16511]
 gi|319420000|gb|ADV47110.1| glucose inhibited division protein A [Nitratifractor salsuginis DSM
           16511]
          Length = 624

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/618 (46%), Positives = 389/618 (62%), Gaps = 10/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EA+  AA++GA T +IT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NHDVIVIGGGHAGIEASLAAARMGAKTLMITILAEQIGASSCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA G+QFR+LN  KGPAVRG R Q D + YR+ M+   L+  NL+V Q  V
Sbjct: 62  LGGEMGLCTDATGLQFRLLNSSKGPAVRGSRAQIDMDRYRIYMRDVCLNTPNLEVKQEIV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +  Q  +      V++ +GTFL G+IHIG+    AGR G+  S SL  
Sbjct: 122 ERLIVEDGEVKGVETQLGNRYLAPKVIIASGTFLNGLIHIGQRTQQAGRQGEFASVSLAE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F+ GRLKTGT AR+ G +I +   E+Q  DER IPFSF TD+      Q+ C +
Sbjct: 182 NLREMGFEIGRLKTGTCARIAGDSIDFSVMEEQPGDERPIPFSFRTDRENFNPEQMPCWV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETHRII  N   + ++SG I+  GPRYCPSIEDKI RF +R  HQ+F+EP+    
Sbjct: 242 TYTTEETHRIIESNFHRAPLFSGQIEGVGPRYCPSIEDKIDRFRDRPRHQVFVEPQTREA 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D  Y NG+ST+LP ++Q   IR+I GLEK  I+R GYAIEYD+I P EL+ TLE+KKI G
Sbjct: 302 DEFYLNGLSTSLPTDVQEAMIRSISGLEKAKIVRWGYAIEYDFIQPTELYHTLESKKIRG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGTTGYEEAAAQGL+AGIN+       + +   R ++YIGV+IDDL +KG  E
Sbjct: 362 LYWAGQVNGTTGYEEAAAQGLMAGINAVLALRGEEPLILGRDEAYIGVLIDDLVTKGTNE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLL 478
           PYRMFTSRAEYR+ LR DNA  RL   G+KLG + E+  K+     A+  +   +LRS  
Sbjct: 422 PYRMFTSRAEYRLLLREDNAHLRLAHYGVKLGLLPEKFGKKVAGTKAQIAEALEWLRSHY 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAY-EFLS-YPDFSIQNLFSICPDARKFSSLVIERL 536
            +   T + ++      +Q    +TA+ + L+   + S + L  + P+  K+   VIE++
Sbjct: 482 AT--PTKEFIAQLEAMGEQRINDKTAWIDLLARIAEPSREKLLELLPEFAKYPDEVIEQI 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            +E+ Y  Y  +Q  +   +       IP+DFDY  +  LSNE+ EKL    P  L +AS
Sbjct: 540 LVEAKYYRYIEKQQQQIDRMHEMHTVRIPEDFDYRKVQGLSNEIVEKLEKATPPTLFEAS 599

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAA+ +L +YIK
Sbjct: 600 RISGITPAAIEILHVYIK 617


>gi|188997499|ref|YP_001931750.1| glucose inhibited division protein A [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|259495853|sp|B2V6C3|MNMG_SULSY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|188932566|gb|ACD67196.1| glucose inhibited division protein A [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 620

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 293/625 (46%), Positives = 389/625 (62%), Gaps = 32/625 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAG EAA  +AKLG  TALIT     IG M CNP+IGG+ KG +VRE+DA
Sbjct: 6   EYDVVVIGGGHAGIEAALASAKLGTKTALITIDKEKIGLMPCNPSIGGIAKGIVVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D  GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI+ EV
Sbjct: 66  LGGEMAKAIDQTGIQFKVLNTRKGPAVRSPRAQADKEEYRKYMVNKTNNTENLTVIEDEV 125

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   KN +  ++      I+   VV+TTGTFL G+IHIG  + PAGRM + PS  L
Sbjct: 126 IDIVLKENKNEVDGVITDKGLKIKTKAVVVTTGTFLNGLIHIGDKRFPAGRMEEKPSTKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------TNR 236
              + +  F+  R KTGTPARLD  TI +   E+   D     FSF T+           
Sbjct: 186 PEFYKRAGFELFRFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWFKEKD 245

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           QI C IT T  ETHRII EN+  +A+Y G I   GPRYCPS+EDKIV+F  ++ H ++LE
Sbjct: 246 QIPCYITYTTPETHRIIKENLHRTALYGGAITGIGPRYCPSVEDKIVKFEGKDRHTVWLE 305

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PE  +   +YPNG+ST+L EEIQ Q  R+IPGLE V +++P YAIEYD + P EL+PTLE
Sbjct: 306 PETRDGISIYPNGLSTSLSEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELYPTLE 365

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDL 415
           TK+I GL+ AG  NGTTGYEEAA QG+VAGIN+A R   K +     R ++YIGVMIDDL
Sbjct: 366 TKRIRGLYHAGNFNGTTGYEEAAGQGIVAGINAALRALGKDEPFIIRRDEAYIGVMIDDL 425

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T+KGV+EPYR+FTSR+EYR+ LR DNA  RL      +G + E          +EY F++
Sbjct: 426 TTKGVIEPYRLFTSRSEYRLHLRQDNAILRLYQKAYNIGMLNE----------EEYKFVK 475

Query: 476 SLLKSLVLTSKN-LSSTSISFKQDGKTRTA-YEFLSYPDFSIQNLFSI---CPDARKFSS 530
              + +    KN ++    +F +DG  + + + +L  P+  IQ L  +    P+    S 
Sbjct: 476 ETEEEI----KNWINIYKETFIKDGDKKVSIFTYLQKPEVDIQKLKEMGIAVPE----SD 527

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E ++I   Y  Y  R+    +++K+ E   IP+D DYS +  L  E+ +KL+  KP 
Sbjct: 528 YIQEEIEINVKYDGYLEREEKLNEKMKYLEGIKIPEDIDYSQVAGLRKEIVQKLTKFKPM 587

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L QAS++EG+TPAA+  LL++I+K
Sbjct: 588 TLGQASRLEGITPAAITALLVHIEK 612


>gi|46447473|ref|YP_008838.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|81170564|sp|Q6MA36|MNMG_PARUW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46401114|emb|CAF24563.1| putative glucose-inhibited division protein [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 625

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 283/613 (46%), Positives = 390/613 (63%), Gaps = 17/613 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  +A++G  T L+T    TI  MSCNPA+GG+ KGH+VREIDAL
Sbjct: 10  YDVIVIGGGHAGCEAALASARMGLRTLLLTMNLDTIAKMSCNPAVGGIAKGHIVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D  GIQ+R+LN  KGPAV  PR QAD+  Y+  M+  +    NLD+ QG + 
Sbjct: 70  GGEMGKVIDVTGIQYRMLNATKGPAVWAPRAQADKLAYQSEMKHRMERVSNLDIKQGTIE 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I  ++ ++     C  +VL++GTFLRG++HIG+     GR GD PS  +  S
Sbjct: 130 DLLIENDHICGVITKEGISYDCQAIVLSSGTFLRGLLHIGETNYSGGRAGDQPSVGMSAS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             K+    GRLKTGTP R++ ++I +  TE+Q  D   + FS+  + I    Q+ C IT 
Sbjct: 190 LEKYGLKLGRLKTGTPPRINKRSIDFSCTEEQPGDPG-VKFSYDNEGIPRLPQVSCYITY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET +II+ NI  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEGL T  
Sbjct: 249 TTEETKQIILSNIHRSPMYSGKIKGVGPRYCPSIEDKVVRFSDKERHQIFLEPEGLQTQE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NG+S++LP ++Q  FI++IP L    I+RP YAIEYDY+   ++  +LE KKI GLF
Sbjct: 309 VYVNGVSSSLPFDVQLAFIKSIPALRHAEIMRPAYAIEYDYVISGQIDFSLECKKIGGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL+AGIN+A K      +   R+++YIGVMIDDL +KG+ EPY
Sbjct: 369 LAGQINGTSGYEEAAGQGLMAGINAANKVMGKAPLILKRSEAYIGVMIDDLVTKGLDEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RL   G ++G + + R          Y+ ++   + +   
Sbjct: 429 RMFTSRAEHRLLLRQDNADLRLRRYGYEVGLVDQTR----------YDRVKEKQRIMEEE 478

Query: 485 SKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESSY 542
           S+ L+ T   FKQ   K  T  + L  P+ +  +L    PD  + F   +  ++++   Y
Sbjct: 479 SERLAKT---FKQVSNKGYTLTQLLCRPENTYASLLKEYPDVMQNFGEEINFQIELNLKY 535

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E  ++   EK  IP  FD+S++  L NE K+KL+ + P +L QA +I G++
Sbjct: 536 AGYIDRQTSEVAKLAHVEKIQIPIGFDFSTVNGLRNEAKQKLNQIAPRHLGQALRISGVS 595

Query: 603 PAALNLLLIYIKK 615
           PA +++L+I + +
Sbjct: 596 PADISILMIALTR 608


>gi|121602981|ref|YP_980310.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Polaromonas naphthalenivorans CJ2]
 gi|205375705|sp|A1VIB1|MNMG_POLNA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120591950|gb|ABM35389.1| glucose inhibited division protein A [Polaromonas naphthalenivorans
           CJ2]
          Length = 667

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/653 (44%), Positives = 393/653 (60%), Gaps = 39/653 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R I +Q NL + Q  
Sbjct: 65  AMGGAMALATDEGGIQFRILNGSKGPAVRATRAQADRILYKAAIRRMIENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G    PAGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIKFRARTVVLTAGTFLDGKIHVGLNNYPAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIP-FSFMTDKITN- 235
               +     GRLKTGTP R+DG++I + K   Q  D         +P FSFM   + + 
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSKCGVQPGDGMPGGTPGPVPVFSFMGGNVPHP 244

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF  ++ HQIFL
Sbjct: 245 KQVPCWITHTNERTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFAGKDSHQIFL 304

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL T  +YPNGIST+LP +IQ+  +R++ G+E  +I+RPGYAIEYDY +P+ L    
Sbjct: 305 EPEGLTTHEIYPNGISTSLPFDIQYALVRSMAGMENAHILRPGYAIEYDYFDPRALKTNF 364

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET+ I GLF AGQINGTTGYEEAAAQG+ AGIN+A +  + +     R ++Y+GV++DDL
Sbjct: 365 ETRAIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQCQEKEAWLPKRDEAYLGVLVDDL 424

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R   F +     +   
Sbjct: 425 ITKGVTEPYRMFTSRAEFRLMLREDNADMRLTEKGRELGLVDDARWDAFNRKRDIVSRET 484

Query: 476 SLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL- 531
             L++L +   NL ++    +  K   +     + L  PD +   L S+  D  ++++  
Sbjct: 485 QRLRALWINPNNLPASEAERVLGKAIEREYNLADLLRRPDVNYAGLMSL--DGGRYANPE 542

Query: 532 -------------------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
                                    VIE+++I + YA Y   Q +E +     E   +P 
Sbjct: 543 IPTGNEDVSRETSTDSALPADLVKSVIEQIEITAKYAGYIDLQKVEVERASHYENLKLPA 602

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           D DY  + ALS E ++ LS  +P  L  AS+I+G+TPA ++LLL+++KKN  K
Sbjct: 603 DLDYLQVSALSFEARQMLSKHRPETLGLASRIQGITPATISLLLVHLKKNLWK 655


>gi|149182298|ref|ZP_01860777.1| glucose-inhibited division protein A [Bacillus sp. SG-1]
 gi|148849990|gb|EDL64161.1| glucose-inhibited division protein A [Bacillus sp. SG-1]
          Length = 629

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIG GHAG EA   AA++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QFDVIVIGAGHAGVEAGLAAARMGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I  + N+ ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHEMKKTIEDEPNMTLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +    +V Q  +  R  TVV+TTGTFLRG I +G L+  +G     PS  L  
Sbjct: 127 ESLIIEDDECKGVVTQTGAEYRAKTVVITTGTFLRGEIILGDLRYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDMVRFKTGTPPRVNSKTIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNAETHQLIDDNLGRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGKNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLEK  ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQMKILATIPGLEKAQLMRAGYAIEYDSIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A ++   + +  +R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRALDKEEVILNRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL-LK 479
           R+ TSRAEYR+ LR DNAD RLT IG K+G I + R +RF    A   +E   L+++ LK
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDIGHKIGLISDERYERFLTKKALVEEEKARLQTIRLK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T   +     S  +DG    A + L  P+ +  ++ ++ P     +  + E+++I+
Sbjct: 487 PNEETQNVIKEAGGSELKDGI--LASDILRRPEMNYSHIKALIPREEPLTEDIEEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +  ++K  E + IP   DY ++  L++E ++KL  ++P +L QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVDKMKKMENKKIPDFIDYDAINGLASEARQKLKEVRPLSLAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|119776787|ref|YP_929527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella amazonensis SB2B]
 gi|166200610|sp|A1SBV1|MNMG_SHEAM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119769287|gb|ABM01858.1| glucose-inhibited division protein A [Shewanella amazonensis SB2B]
          Length = 629

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/615 (46%), Positives = 379/615 (61%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFR LN  KGPAVR  R QADR LY+  +   +  Q NL + Q  V 
Sbjct: 67  GGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +   V Q         VVLT GTFL G IHIG      GR GD P+ +L + 
Sbjct: 127 DLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPAIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                   GRLKTGTP R+D +TI +    +Q  D  L   SF+ D   +  QI C IT 
Sbjct: 187 LRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQISCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL T  
Sbjct: 247 TNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E+  I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A +    +     R  +Y+GV++DDL++ G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R ++F++  +     +  L+   + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRLRGQWVH 486

Query: 485 SKNLSSTSISFKQDGK-TRTAY--EFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             +     ++       TR A   + L  P+     L  +       +  L  E++QI+ 
Sbjct: 487 VNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E  + +  E   +P D DYS +P LSNE+  KL+  KP  + QAS+I G
Sbjct: 547 KYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+++LL+++KK
Sbjct: 607 VTPAAVSILLVHLKK 621


>gi|262372168|ref|ZP_06065447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter junii SH205]
 gi|262312193|gb|EEY93278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter junii SH205]
          Length = 626

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/619 (46%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRHTLENQANLVIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTPIG +LG + + R   +++ ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHDDVAQMKRLEETKIPADFEYDGVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|319891294|ref|YP_004148169.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317160990|gb|ADV04533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 624

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 396/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +S+DVIV+G GH+G EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   KSFDVIVVGAGHSGIEAGLASARRGAHTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  ++NL+V+QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEDEDNLEVMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +     +  R   V+LTTGTFLRG I +G LK  +G     PS +L 
Sbjct: 123 VDELIIEDGEVKGVRTNIGTEYRAKAVILTTGTFLRGEIILGNLKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +  F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DHLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYDTTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPEE+Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEEVQRQMLATIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A +    +     R+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAARVLGKEETILRRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I + R +RF    Q+     + L+ + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYERFNTKRQQITDEMARLEQIRV 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                    I  K   + +    A E L  P+ + + +  I  + R+  + V E+++I++
Sbjct: 483 KPSERVQQIIEEKGGSRLKDGILAKELLRRPEMTYETIIEILEEERQLPADVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + +  ++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYITKSLQQVDKVKRMEQKKIPEDLDYSQIDSLATEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKIQ 621


>gi|323465553|gb|ADX77706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius ED99]
          Length = 624

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 396/619 (63%), Gaps = 3/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +S+DVIV+G GH+G EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 3   KSFDVIVVGAGHSGIEAGLASARRGAHTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  ++NL+V+QG 
Sbjct: 63  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEGEDNLEVMQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +     +  R   V+LTTGTFLRG I +G LK  +G     PS +L 
Sbjct: 123 VDELIIEDGEVKGVRTNIGTEYRAKAVILTTGTFLRGEIILGNLKYSSGPNHQLPSITLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +  F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C +T
Sbjct: 183 DHLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYDTTEYILDQLPCWLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 243 YTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPEE+Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETK I  L
Sbjct: 303 EVYVQGLSTSLPEEVQRQMLATIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKMIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+A +    +     R+D+YIGV+IDDL +KG  EP
Sbjct: 363 YTAGQINGTSGYEEAAGQGLMAGINAAARVLGKEETILRRSDAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I + R +RF    Q+     + L+ + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYERFNTKRQQITDEMARLEQIRV 482

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                    I  K   + +    A E L  P+ + + +  I  + R+  + V E+++I++
Sbjct: 483 KPSERVQQIIEEKGGSRLKDGILAKELLRRPEMTYETIIEILEEERQLPADVEEQVEIQT 542

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + +  ++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS+I G
Sbjct: 543 KYEGYITKSLQQVDKVKRMEQKKIPEDLDYSQIDSLATEAREKLAEVKPLNIAQASRISG 602

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA +++LL+Y+++  ++
Sbjct: 603 VNPADISILLVYLEQGKIQ 621


>gi|327295821|ref|XP_003232605.1| mitochondrial translation optimization protein [Trichophyton rubrum
           CBS 118892]
 gi|326464916|gb|EGD90369.1| mitochondrial translation optimization protein [Trichophyton rubrum
           CBS 118892]
          Length = 693

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/634 (45%), Positives = 393/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 34  TRPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREI 93

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G
Sbjct: 94  DALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEG 153

Query: 123 EVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA            N  +  I  + ++   +I    V++TTGTFL G IHIG    P+G
Sbjct: 154 KVADIVISKENMTSLNGSQGEIIGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSG 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D 
Sbjct: 214 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDS 273

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 274 VQIGDKGQLSCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKDKP 331

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P
Sbjct: 332 RHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDP 391

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +I
Sbjct: 392 RSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFI 451

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G +  +R ++F +  
Sbjct: 452 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTARGRAAGVVSAKRWRQFNQTK 511

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--- 525
           ++ ++L++LL++    S   +      + D   R+A+E LS+   S+ ++      A   
Sbjct: 512 EQMSYLQALLENTKHPSTLWARKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIESAPGT 571

Query: 526 ----RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 FSS +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E +
Sbjct: 572 IHSLSSFSSEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEER 631

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 632 QVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|258517428|ref|YP_003193650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781133|gb|ACV65027.1| glucose inhibited division protein A [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 634

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/618 (44%), Positives = 389/618 (62%), Gaps = 12/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  +A++G  T ++T     +G M CNPA+GG  K  LVREIDAL
Sbjct: 8   YDVVVVGAGHAGCEAALASARMGCKTLVVTVNLDNVGLMPCNPAVGGPAKSQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G   D   IQ R+LN  KGPAV   R QAD+ LY + M+R + +Q NL + Q  + 
Sbjct: 68  GGEIGNNTDQVAIQMRMLNTAKGPAVHALRAQADKNLYHVNMKRVLENQPNLFLKQLTIE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++    +   C  V+LTTGT+L+G I IG L    G  G+ PS  L +S
Sbjct: 128 KILVENDKVVGVIAAAGARFACKAVILTTGTYLKGRIIIGDLAYSGGPQGNFPSIGLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   + GR KTGTP R+D  ++ + K   Q  D+RL+ FSF +     +Q+ C +T T
Sbjct: 188 LKEIGLELGRFKTGTPPRIDRNSVDFSKMSIQPGDDRLLNFSFESKVEDRKQVPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH+II +N+  S +++G IK  GPRYCPSIEDK+VRF E+  HQ+F+EPEGL T  +
Sbjct: 248 NENTHKIIRDNLHRSPLFAGVIKGTGPRYCPSIEDKVVRFSEKPKHQVFIEPEGLTTTEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G++T+LPE++Q   +RTIPGLEKV I+R GYAIEYDY+ P +L  +LE+KKISGLF 
Sbjct: 308 YVQGMNTSLPEDVQLAMLRTIPGLEKVEIMRTGYAIEYDYLPPSQLKLSLESKKISGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG++AGINS     + +    SR D+YIGV+IDDL +KG+ EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGIMAGINSVLYIKEKEPFILSRADAYIGVLIDDLVTKGITEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RL+ +G  LG I + R  RF    ++  F    L SL +T 
Sbjct: 428 LLTSRAEYRLLLRQDNADLRLSDMGYNLGLIQQDRYDRFCNKREKIKFEIERLSSLSVTV 487

Query: 486 --------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                   KN+ ++ I   Q G    +   L  P+ S ++L  I  +  + S  +IE ++
Sbjct: 488 NENVKQILKNIGTSEIP--QQGIKMAS--LLRRPEVSYKDLIKINKEKVELSDDIIEEVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  +Q  + ++ K  E RL+P   DYS +  L+ E   KL+ +KP ++ QAS+
Sbjct: 544 IQIKYEGYIKKQTAQIEKFKKIEGRLLPAALDYSKVRGLAAEAALKLNQIKPLSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+ PA +++L+IY+++
Sbjct: 604 IGGVNPADISVLMIYLEQ 621


>gi|238025741|ref|YP_002909972.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Burkholderia glumae BGR1]
 gi|237874935|gb|ACR27268.1| Glucose inhibited division protein A [Burkholderia glumae BGR1]
          Length = 656

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 388/626 (61%), Gaps = 15/626 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRSRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLIVEGERVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNHTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DG++I + K E+Q  D   +P FSF+     + RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRSIDFSKLEEQPGDLDPVPVFSFLGRAEQHPRQLPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 307 EFYPNGISTSLPFDVQLDLVHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+ R +   +  C  R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGRYAQDKEAWCPRRDQAYLGVLVDDLVTRGVSEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT +G +LG + + R   F++     +     L++  +
Sbjct: 427 YRMFTSRAEYRLSLREDNADMRLTEMGRELGVVDDVRWDAFSRKRDAVSRETERLRATWV 486

Query: 484 TSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFS------S 530
           T K L+   +T++  K      +  E L  P  S   +  +    C  A   +      +
Sbjct: 487 TPKTLAVEEATALLGKAIDHEYSLAELLRRPGVSYAGVCGLRGGECAPAEPLADDPVLLA 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E ++KL+  +P 
Sbjct: 547 QIEEQIEIGIKYQGYIERQAGEIERNGAHENTRLPDGIDYAEVRGLSFEARQKLNQHRPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QAS+I G+TPAA++LL++++K+ 
Sbjct: 607 TIGQASRISGITPAAISLLMVHLKRG 632


>gi|195027347|ref|XP_001986544.1| GH20470 [Drosophila grimshawi]
 gi|193902544|gb|EDW01411.1| GH20470 [Drosophila grimshawi]
          Length = 658

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/636 (45%), Positives = 417/636 (65%), Gaps = 36/636 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 27  YDVIVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV------ 119
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+QRE+ +  NL++      
Sbjct: 87  DGVCARCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQRELFNTANLEIRAAGVD 146

Query: 120 -IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            +Q +V   ++     S +++++  ++R   VVLTTGTFLR  I+IG     AGRMGD P
Sbjct: 147 NLQIDVDESSSSNTRCSGVLLENGELVRSRAVVLTTGTFLRAHINIGLEVREAGRMGDKP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
           + +L  +  + +F  GRLKTGTP R+   +I + + EK  AD+  +PFSF+ D++    +
Sbjct: 207 AKALGEALNRLNFRMGRLKTGTPPRIARSSIDFTQLEKHAADDPPVPFSFLNDEVWLPAS 266

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T      I+ EN+  +   + ++   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQMPCYLTYTTPRVDEIVRENMHQNRHVTEEVT--GPRYCPSIESKVLRFGARV-HQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ + YP GIS  LP   Q + +R I GLE   +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLCYPQGISCTLPHAQQVELVRAIKGLESAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMID 413
           ETK++SGLF AGQINGTTGYEEAAAQG++AG N+A K  S     +  SRT+ YIGV+ID
Sbjct: 384 ETKRVSGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTLSQNGQQLSISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G K G + E+R + F +  Q+   
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTEKGYKFGLVSEKRYQHFQQTEQK--- 500

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQ--------DGKTRTAYEFLSYP--DFSIQNLFSICP 523
           L++ +KSL    K L   S  F+Q            ++A++ L+ P  + ++  L  +CP
Sbjct: 501 LKAGIKSL----KGLQKHSNFFRQALGLPQTKASIQKSAFDMLAVPADNITVDQLIDLCP 556

Query: 524 DARKF---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNE 579
               +      +  RL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE
Sbjct: 557 GELSWLRTDGDISARLKIEALYSFFVDEQQRDVEDVRREERLCIPTDIDYFSKSLSLSNE 616

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++K+++++P  +  AS+I+G+TP+ +  +L Y+KK
Sbjct: 617 ERQKVTLIQPQTIAAASRIQGVTPSTILRILKYVKK 652


>gi|262369744|ref|ZP_06063072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter johnsonii SH046]
 gi|262315812|gb|EEY96851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter johnsonii SH046]
          Length = 626

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/617 (46%), Positives = 389/617 (63%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRIRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLT GTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQTGIRFDAKTVVLTAGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPTMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R ++Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDEAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++        L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVEQETGRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S+ V ++++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELT--RSEVSAQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+  KL  ++P  L QA++I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETKIPADFNYDVVSGLSREITLKLKDVRPETLAQANRIP 602

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ L++I I+KN
Sbjct: 603 GVTPAAVQLIMITIRKN 619


>gi|205831579|sp|A1WGT2|MNMG_VEREI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 658

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/645 (44%), Positives = 391/645 (60%), Gaps = 31/645 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+G GHAG EAA  AA+LG  T L+T    T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGAGHAGTEAALAAARLGQRTLLLTQSLETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + Q  
Sbjct: 65  ALGGAMALATDESGIQFRILNRSKGPAVRATRAQADRLLYKAAIRRRLENQPGLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q   +     VVLT GTFL G IH+G     AGR G+  +  L 
Sbjct: 125 VDDLMLEGDRVVGAVTQVGVVFCARAVVLTAGTFLDGKIHVGLSHYAAGRAGEPSAIGLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTD---- 231
               +     GRLKTGTP R+DG++I W + E+Q  D          +P FSFM      
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDWSQCEEQPGDGMPGGVNAGQVPVFSFMAHAYGG 244

Query: 232 -KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            ++  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ 
Sbjct: 245 ARMHPQQLPCWITHTNQRTHAIIRSGFDRSPMFTGSIEGVGPRYCPSVEDKINRFADKDS 304

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQ+FLEPEGL T  VYPNGIST+LP +IQ+Q +R++ GLE  +I+RPGYAIEYDY +P+ 
Sbjct: 305 HQVFLEPEGLGTHEVYPNGISTSLPFDIQYQLVRSMAGLENAHILRPGYAIEYDYFDPRA 364

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L    ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R  +Y+GV
Sbjct: 365 LKSNFETRQIRGLFFAGQINGTTGYEEAAAQGLFAGVNAALQCRGDAPWLPGRDQAYLGV 424

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R + F++    
Sbjct: 425 LVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEVGRRMGLVDDARWEVFSRKRDA 484

Query: 471 YNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
                  LK+  +  +NL    S  +  K      + +E L  PD     L S+  D  K
Sbjct: 485 VLRETERLKATWVNPRNLPDIESGRVLGKPMAHEYSLFELLRRPDVDYAGLMSL--DGGK 542

Query: 528 FSSL-------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           +++              V+E+++I + YA Y  RQ  E +     E   +P   DY+ + 
Sbjct: 543 YAAADVSRETLGMLSESVVEQVEIAAKYAGYIERQKGEVERAAHFETLRLPAGLDYAQVT 602

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ALS E ++ LS  +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 603 ALSIEARQVLSRHRPETLGQASRITGITPAAISLLLVHLKKGGFK 647


>gi|170109500|ref|XP_001885957.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639228|gb|EDR03501.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 651

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 294/622 (47%), Positives = 401/622 (64%), Gaps = 12/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV VIGGGHAGCEAAA AA+ G  T L+T K  TIG +SCNP+IGG+GKG LVRE+DA
Sbjct: 23  SYDVCVIGGGHAGCEAAAGAARTGTRTVLLTQKLETIGELSCNPSIGGVGKGTLVREVDA 82

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG V D AGIQF++LN  KG AV GPR Q DR+LY+  +Q  + +  NLD+  G V
Sbjct: 83  LGGIMGGVVDKAGIQFQILNRTKGAAVWGPRAQIDRKLYKKNIQNVLHNYPNLDIRAGSV 142

Query: 125 AGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                +++         IS + ++   +I CS VV+ TGTFL G IHIG  + PAGR+G+
Sbjct: 143 FDIVIDQSDNTLGRWGKISGVKLETGEIIPCSQVVICTGTFLSGEIHIGLNRFPAGRLGE 202

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN- 235
           +PS  L  S     F  GRL+TGTPARLD  TI +   E+Q  D    PFSFM   + N 
Sbjct: 203 APSIGLSASLNAAGFKLGRLQTGTPARLDISTIDFGGLERQDGDVVPSPFSFMNRTVANA 262

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T T  ETH+II +NI H +++  + +  GPRYCPS+E K++RFG ++ H ++
Sbjct: 263 DNQVYCYKTATTPETHQIIKDNI-HLSVHIQETRK-GPRYCPSLEAKVLRFGHKDHHTVW 320

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG ++D++YPNGIS ++PEE+Q   IRTIPGLE   +++P Y +EYDYI+P+EL PT
Sbjct: 321 LEPEGYDSDLIYPNGISCSIPEELQETMIRTIPGLENAKMVKPAYGVEYDYIDPRELGPT 380

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET +I GLFLAGQINGTTGYEEAAAQG+VAGIN+     K   +  +R D + GVMIDD
Sbjct: 381 LETNRIKGLFLAGQINGTTGYEEAAAQGIVAGINAGLAVLKRPPLVLTRADGFTGVMIDD 440

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L  KG  EPYRMFTSR+EYR+++R DNAD RLT  G + G I + R   F +        
Sbjct: 441 LIVKGAEEPYRMFTSRSEYRMTIRSDNADMRLTEKGREAGVISDERWSAFNETRTTMADA 500

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              LKSLV + +  ++  +  ++DG  R+A++ L YP  + + L    P+ R     ++ 
Sbjct: 501 TKRLKSLVFSPQGWAAHGVRVQRDGILRSAFQMLRYPGVTTEFLKGAVPELRDIHPSILS 560

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R+ +E  Y A+  RQ  + K    +E  L+    +YS++P LS+E+ E+L  +KP  +  
Sbjct: 561 RIDVEGQYDAHLTRQEADLKTFMEDESLLLDPRMEYSTVPGLSSEVVERLYRVKPTTIGA 620

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           A ++EGMTP ++  LL + K+ 
Sbjct: 621 AKRMEGMTPTSVVYLLKHAKRT 642


>gi|91090344|ref|XP_967278.1| PREDICTED: similar to glucose inhibited division protein a
           [Tribolium castaneum]
          Length = 659

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 296/634 (46%), Positives = 416/634 (65%), Gaps = 27/634 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+GGGHAG EA+A AA++GA T L+THK  T+G MSCNP+ GG+GKGHL+REI
Sbjct: 27  DKNYDVIVVGGGHAGSEASAAAARMGAQTLLVTHKKETVGEMSCNPSFGGIGKGHLMREI 86

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQ 121
           DALDG+ GR+ D +GIQ++VLN +KGPAV G R Q DR+LY+  +Q E+  +  NLD++ 
Sbjct: 87  DALDGICGRMCDLSGIQYKVLNKRKGPAVWGYRAQIDRDLYKKHIQTELFENTPNLDILV 146

Query: 122 GEVAGFNTEKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E    +S          I++ D + I   +V++TTGTFL G I+IG    PA
Sbjct: 147 ASVEDLIVENPTTNSNKQTVIDCHGIILSDGTKIHAKSVIITTGTFLNGQINIGTKIYPA 206

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+GD PS  L  +        GRLKTGTP RL+  TI +   + Q  D   +PFSFM D
Sbjct: 207 GRIGDQPSIGLAKTLAALSLKMGRLKTGTPPRLNSNTINYKVCDIQKGDNPPLPFSFMND 266

Query: 232 KITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           K+  +   Q+ C +T+T+L+   II  N+  +   + ++   GPRYCPSIE K++RFG R
Sbjct: 267 KVWIKPEDQLVCYLTKTSLDIEPIIRNNLHVNRHVTEEVT--GPRYCPSIESKVLRFGGR 324

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL +D+VYPNG+S  LPEE+Q + I +IPGLEK  I RPGY +EYD+++P
Sbjct: 325 Q-HQVWLEPEGLTSDIVYPNGLSCTLPEELQFELIHSIPGLEKAEITRPGYGVEYDFVDP 383

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           +EL  TLE K+I  LFLAGQINGTTGYEEAAAQG++AGIN+  KS     I  SRT+ YI
Sbjct: 384 RELQTTLELKRIHNLFLAGQINGTTGYEEAAAQGIIAGINALGKSP----ITVSRTEGYI 439

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV+IDDLT+ G  EPYRMFTSRAE+R++LRPDNAD RLT  G ++GC+ + R  +     
Sbjct: 440 GVLIDDLTTLGTNEPYRMFTSRAEFRLTLRPDNADQRLTAKGYQVGCVNKARYDKMVAMQ 499

Query: 469 QEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDA 525
           ++ N   SLLKS+   ++       ++  ++   ++A+  L   +   +I  L ++ P+ 
Sbjct: 500 KKLNDGISLLKSITKPARTWRKLLKMAPSRNMMQKSAFNMLDCYNEGITISMLATVAPEL 559

Query: 526 RKFSS--LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD-YSSLPALSNELKE 582
              +   L+  RL IE++Y A    Q +E +E++ EE  LIPKD D YS    L++E +E
Sbjct: 560 LPLTHDPLLENRLHIEATYEAAASEQAVEVEEVRKEEALLIPKDLDYYSDTLNLNSEERE 619

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           KL  ++P  +  AS+I G++P+++  LL ++KKN
Sbjct: 620 KLCSIQPQTIAAASRIPGISPSSVFRLLRFVKKN 653


>gi|326472355|gb|EGD96364.1| mitochondrial translation optimization protein [Trichophyton
           tonsurans CBS 112818]
          Length = 693

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/633 (45%), Positives = 392/633 (61%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEGK 154

Query: 124 VA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA            N  +  I  + ++   +I    V++TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVISKENKTSLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDSV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF ++  
Sbjct: 275 QIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +IG
Sbjct: 393 SLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + + R ++F +  +
Sbjct: 453 IMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDERWRQFNETKE 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA---- 525
           + ++L++LL++    S   +      + D   R+A+E LS+   S+ ++      A    
Sbjct: 513 QMSYLQALLENTKHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIESAPGTI 572

Query: 526 ---RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E ++
Sbjct: 573 HSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 633 VLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|152991802|ref|YP_001357523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurovum sp. NBC37-1]
 gi|205831575|sp|A6Q6Q7|MNMG_SULNB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151423663|dbj|BAF71166.1| glucose inhibited division protein A [Sulfurovum sp. NBC37-1]
          Length = 623

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/623 (46%), Positives = 390/623 (62%), Gaps = 21/623 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVIGGGHAGIEASLASARMGVKTLLITILAEQIGASSCNPAIGGLAKGHLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFR LN  KGPAVRG R Q D + YR+ M+  +L+ ENLDV Q   
Sbjct: 62  LGGEMGLCTDATGIQFRTLNASKGPAVRGSRAQIDMDEYRIYMRNVVLNTENLDVKQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   E+  +  +  Q  +    S V++T GTFL G+IHIG  K  AGR G+  S  L  
Sbjct: 122 DGLIVEEGEVKGVTTQLGNRYTASKVIITAGTFLNGLIHIGDKKQTAGRQGEFASVELAE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
                  + GRLKTGT AR+D K++     E Q  D    PFSF TDK T   +Q+ C +
Sbjct: 182 YLKGLGLNIGRLKTGTCARIDAKSVDTSVMEVQPGDTPPPPFSFRTDKSTFNPKQLPCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  TH II  N   + ++SG I+  GPRYCPSIEDKI RF +R  HQIF+EP+ ++ 
Sbjct: 242 AYTNERTHEIIESNFYRAPMFSGQIEGVGPRYCPSIEDKINRFRDRPRHQIFVEPQTIDE 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG+ST+LP ++Q + +R++ G++   I+R GYAIEYDY++P EL  TLETKKI G
Sbjct: 302 TEYYINGMSTSLPIDVQLEMVRSVEGMKNAKIVRYGYAIEYDYVDPTELKHTLETKKIKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AGIN+A      + +   R ++YIGV+IDDL +KG  E
Sbjct: 362 LYTAGQINGTTGYEEAAAQGLMAGINAALSIQGKEALILRRDEAYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-------ERRQKRFAK---YIQEYN 472
           PYRMFTSRAEYR+ LR DNAD RL+  G +LG +        E +QK   +   Y+QE N
Sbjct: 422 PYRMFTSRAEYRLLLREDNADMRLSKYGKELGLLDDAYIAKFEEKQKNIEEALNYLQE-N 480

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSL 531
           ++ +  K  +   + + +  I+       RT + + +   DF+   L S+ P+  K+   
Sbjct: 481 YV-TPTKEFLAKLEAIGAVKIN------DRTCWIDVIGRGDFNRDKLVSLLPEFDKYDDE 533

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V+ ++ +E+ Y+ Y  +Q ++  ++K   K  IP+DF Y ++  LSNE+ EKL    P  
Sbjct: 534 VMGQILVEAKYSRYIEKQQMQIDQMKDMLKIKIPEDFTYKNVSGLSNEIVEKLEKANPTT 593

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           L  AS+I G+TPAAL ++ +YIK
Sbjct: 594 LFAASEISGVTPAALEIIHVYIK 616


>gi|300689821|ref|YP_003750816.1| glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum PSI07]
 gi|299076881|emb|CBJ49494.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum PSI07]
          Length = 647

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +     V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRAVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNQHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I GL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEAGRGLGVVDDVRWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFSS 530
           +   L    +  +  K   +  +  + L  P+ + ++L  +            D    + 
Sbjct: 487 SPAILPVADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGAKYAPEAPLADEPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I   Y  Y  RQ  E + +   E   +P DFDY+ +  LS E+++KL+  KP 
Sbjct: 547 QVREQIEIGIKYHGYIARQADEVERLGANESTRLPADFDYTQVRGLSIEVQQKLAQHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|59713182|ref|YP_205958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri ES114]
 gi|197333896|ref|YP_002157362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri MJ11]
 gi|75353166|sp|Q5E1M6|MNMG_VIBF1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690284|sp|B5FDA8|MNMG_VIBFM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|59481283|gb|AAW87070.1| glucose-inhibited cell-division protein [Vibrio fischeri ES114]
 gi|197315386|gb|ACH64833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri MJ11]
          Length = 629

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 287/622 (46%), Positives = 393/622 (63%), Gaps = 15/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EAA  AA+ G +T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVIGGGHAGTEAALAAARTGQNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q NL + Q  V
Sbjct: 66  LGGLMAQAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENQPNLTLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 DDLIIENDKVMGAVTQMGLKFRAKSVVLTAGTFLGGQIHIGMENFSGGRAGDPSSITLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D +++ +   E Q  D     FSF+  +  + +Q+ C IT
Sbjct: 186 RLRERPFRIDRLKTGTPPRIDARSVDFSGLEAQPGDNPTPVFSFLGKREHHPQQVNCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL+T 
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGLSTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKSTYETKFIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  +   +     R ++Y+GV+IDDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLMAGLNASLFAQGKEGWSPRRDEAYMGVLIDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  RF + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEQGRTLGLVDDVRWARFNEKVENMEQERQRLKDIWI 485

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
             K+        +  T I+ +  G+     + L  P+ + Q+L SI         S   E
Sbjct: 486 NPKSEQVDQVNAILKTPIAREASGE-----DLLRRPEVNYQSLVSIDGFGPALEDSQASE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  YA Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  
Sbjct: 541 QVEIQVKYAGYIQRQRDEIEKSLRHENTKLPFDLDYKEVKGLSNEVVAKLSDAKPETIGI 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK+
Sbjct: 601 ASRISGITPAAISILLVHLKKH 622


>gi|262279572|ref|ZP_06057357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus RUH2202]
 gi|262259923|gb|EEY78656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus RUH2202]
          Length = 626

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLQKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTVGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFNYDIVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|307188483|gb|EFN73226.1| Protein MTO1-like protein, mitochondrial [Camponotus floridanus]
          Length = 663

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/625 (45%), Positives = 405/625 (64%), Gaps = 19/625 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EA+A A ++GA T L+T K +TIG MSCNP+ GG+GKGHL+RE+D
Sbjct: 33  KKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKNTIGEMSCNPSFGGIGKGHLMREVD 92

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+  R+ D +GI ++VLN  KGPAV G R Q DR LY+  +Q E+ +   L + +  
Sbjct: 93  ALDGVCCRICDISGIHYKVLNKCKGPAVWGLRAQIDRTLYKKHLQAELFNMHGLHIYESS 152

Query: 124 VAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V       N +S   ++++D + I    VV+TTGTFL+G I+IG  K PAGR+ D PS  
Sbjct: 153 VEDLILANNPLSCCGVILRDGTKIFGDAVVITTGTFLKGQINIGLEKRPAGRLNDEPSIG 212

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQI 238
           L N+  +  F  GRLKTGTP RL+  +I + K  K   D+  +PFSFM+D +     +QI
Sbjct: 213 LANTLDRLGFQIGRLKTGTPPRLEKDSIDFTKCIKYLPDDSSMPFSFMSDNVWLPPEKQI 272

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
              +T TN    +II +N+  +   + +I   GPRYCPSIE KI+RF +   HQI+LEPE
Sbjct: 273 PTYLTYTNEGVAKIIKDNMHCNLHVTEEIT--GPRYCPSIESKILRF-QTPRHQIWLEPE 329

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++ ++YP+G+S  LPEE Q + +  IPGLE   + +PGY +EYDY++P+EL   LET+
Sbjct: 330 GLDSPLIYPSGLSCTLPEEKQVELVNCIPGLENARLAKPGYGVEYDYVDPRELTSQLETR 389

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KISGLF AGQINGTTGYEEAAAQG+VAG+N+A K  K   +  SRT+ YIGV+IDDLT++
Sbjct: 390 KISGLFFAGQINGTTGYEEAAAQGIVAGVNAAAKVFKKSPLLISRTEGYIGVLIDDLTTE 449

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+  +R  +  + + +      +L
Sbjct: 450 GTTEPYRMFTSRSEFRLSLRPDNADQRLTEKGYAVGCVSRKRLDKTIETLSKIQEAIEIL 509

Query: 479 KSLV-LTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPD-----ARKFSS 530
           K+ + L+ K      +   +  K+++A+E LS  +   + + L +  P+     AR    
Sbjct: 510 KNEIRLSFKWRELLKLKSAKTNKSKSAFEMLSITEKKITFEQLANCLPNLLGHLAR--DP 567

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKP 589
            + ER++IE+ YA     Q  + ++I+  E+ +IP D +Y SS   LS E +EKL+   P
Sbjct: 568 TLAERIEIEAKYAHVVADQQDQVEDIRRNEQLIIPDDINYNSSELNLSIEDREKLTKNLP 627

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             +  A+KI G+TP+A+  LL YIK
Sbjct: 628 STIAAANKISGVTPSAILRLLYYIK 652


>gi|27262248|gb|AAN87405.1| glucose-inhibited division protein A [Heliobacillus mobilis]
          Length = 643

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/624 (44%), Positives = 390/624 (62%), Gaps = 7/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AA++G  T ++T     +  M CNPAIGG  KGHLVREIDA
Sbjct: 15  QYDVIVIGAGHAGCEAALAAARMGCKTLILTISWDNVALMPCNPAIGGPAKGHLVREIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA  IQ R+LN  KGPAV   R QAD++ Y+  M + +  QENLDV Q  V
Sbjct: 75  LGGQMGVTIDATAIQIRMLNTGKGPAVHALRAQADKKKYQQYMIQVLEHQENLDVRQAMV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  +      VV+T+GT+L+G I IG L  P G  G  PS  L  
Sbjct: 135 ETIRVEDGQVQGVLTQTGAFFAAPNVVITSGTYLKGRIIIGDLHYPGGPNGYFPSTELAA 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTPAR+DG+T+ + K  +Q  D   + FSF++ +   +QI C +T 
Sbjct: 195 SLREVGVQLGRFKTGTPARVDGRTVDFTKMVEQPGDSDPLNFSFISSRFERKQISCWLTY 254

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+II +N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +T  
Sbjct: 255 TTEETHQIIRDNLHRSPLYAGVIEGTGPRYCPSIEDKVVRFADKKSHQVFVEPEGADTHE 314

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE+IQ   +R+I G+E V IIRPGYAIEYDY+ P +L  +LE + I GLF
Sbjct: 315 MYVQGMSTSLPEDIQLAMLRSIIGMENVKIIRPGYAIEYDYVVPTQLKLSLEHQTIQGLF 374

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQG++AGIN+A ++   + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 375 TAGQVNGTSGYEEAAAQGIIAGINAACRAQGKEPLILKRSDAYIGVLIDDLVTKGTNEPY 434

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + + R +RF + ++     + L     +T
Sbjct: 435 RMLTSRAEYRLLLRQDNADQRLTEIGCSIGLVDDVRYERFQRKMERVEQEKELWSKTFVT 494

Query: 485 SKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICP--DARK-FSSLVIERLQ 537
             N+    I  ++      K  + ++ L  P+ S  +L S+    +AR+     V E+++
Sbjct: 495 PGNIRLQEILEQKRSAPLTKGLSLFDLLRRPELSFDDLHSLLEYDEARETVDPEVAEQVE 554

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + +  Y  +Q  + +     E R +P D DY+ +  LS E ++KL   +P +L QAS+
Sbjct: 555 ISAKFEGYLVKQQAQVERFNKLESRRVPPDLDYALIGGLSTEARQKLIARRPESLGQASR 614

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+ PA ++LLL+Y+++   + N
Sbjct: 615 ISGVNPADISLLLVYLEQRRRRDN 638


>gi|169830196|ref|YP_001700354.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Lysinibacillus sphaericus C3-41]
 gi|205831530|sp|B1HPM2|MNMG_LYSSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168994684|gb|ACA42224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Lysinibacillus
           sphaericus C3-41]
          Length = 630

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 398/619 (64%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGAKTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +   ENL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEETENLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVTGVITQIGAIYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  DE    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTIDYDKTEIQPGDEVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKEELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRS-LLK 479
           R+ TSRAEYR+ LR DNAD RL  +  K+G + + R  +F    A    E   LR  ++K
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLLELAYKIGMVPQERYDKFNAKKALIENEIARLREIIIK 488

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T   + S   S  +DG  R A + L  P+   + + S+ P   +F+  V E+++I+
Sbjct: 489 PNEATQAVIRSAGGSELKDG-IRGA-DLLKRPEMHYEMISSLIPADIEFTEEVKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + +++ +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS+I 
Sbjct: 547 LKYEGYIEKALLQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADISILLVYIEQGKI 625


>gi|126651989|ref|ZP_01724181.1| glucose-inhibited division protein A [Bacillus sp. B14905]
 gi|126591258|gb|EAZ85367.1| glucose-inhibited division protein A [Bacillus sp. B14905]
          Length = 630

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/621 (44%), Positives = 401/621 (64%), Gaps = 11/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GA+T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGANTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +   ENL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEETENLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVTGVITQIGAIYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  DE    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTIDYDKTEIQPGDEVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKEELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--V 482
           R+ TSRAEYR+ LR DNAD RL  +  K+G +    Q+R+ K++++   + + +  L  +
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLLELAYKIGMV---PQERYEKFVEKKALIDNEIARLREI 485

Query: 483 LTSKNLSSTSISFKQDGKTRT-----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +   N  +T +  +  G +         + L  P+   + + S+ P   +F+  + E+++
Sbjct: 486 IIKPN-EATQVVIRSAGGSELKDGIRGADLLKRPEMHYEMISSLIPADIEFTEEIKEQIE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + +++ +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS+
Sbjct: 545 IQLKYEGYIEKALLQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQASR 604

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++LL+YI++  +
Sbjct: 605 ISGVNPADISILLVYIEQGKI 625


>gi|121996812|ref|YP_001001599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halorhodospira halophila SL1]
 gi|189039344|sp|A1WSY5|MNMG_HALHL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|121588217|gb|ABM60797.1| glucose inhibited division protein A [Halorhodospira halophila SL1]
          Length = 633

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 289/622 (46%), Positives = 403/622 (64%), Gaps = 10/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIVIGGGHAG EAAA AA+LG ST LITH   TIG++SCNPAIGG+GKGHLVR
Sbjct: 1   MNTNRFDVIVIGGGHAGTEAAAAAARLGRSTLLITHNLETIGALSCNPAIGGIGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MGR+ADA+ I  RVLN +KGPAVR  R QADR  Y  A +R + +   L ++
Sbjct: 61  EIDALGGVMGRLADASAIHARVLNQRKGPAVRATRIQADRPTYARAARRALDALPGLALL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q               +  +  + +    VV+T GTFL G IHIG ++  AGR GD  ++
Sbjct: 121 QDAAEELLVADQRCYGVRTESGATLHADAVVVTAGTFLAGQIHIGHVQHSAGRAGDPAAD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIE 239
            L  S         RLKTGTP R+D +T+  ++ + Q  D     FS F   +    +  
Sbjct: 181 RLSASLRDLGLAVHRLKTGTPPRIDRRTVAVEQLDAQHGDTPRPLFSPFRPPEAPLPEAA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I+ T  ETHRII + + HS +YSG I+S GPRYCPSIEDK+VRF +R+ HQ+FLEPEG
Sbjct: 241 CLISWTTPETHRIIRDALDHSPMYSGAIQSSGPRYCPSIEDKVVRFADRDHHQVFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNG+ST LP  +Q   IR++PGLE   I RPGYAIEYDY++P+ L P LE+  
Sbjct: 301 LDATELYPNGVSTGLPFTVQEALIRSMPGLEAARITRPGYAIEYDYLDPRGLTPWLESAT 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GL+LAGQINGTTGYEEAAAQGL+AG+N+AR S   D    +R ++YIGV+IDDL + G
Sbjct: 361 IAGLYLAGQINGTTGYEEAAAQGLIAGLNAARVSAGEDPWFPTREEAYIGVLIDDLVTTG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+ LR DNA++RLT +G +LG +G+ +  RFA+Y    N  R+ L 
Sbjct: 421 VTEPYRMFTSRAEHRLRLRDDNAEDRLTEVGRRLGSVGDDQWTRFARYRDALNAERARLN 480

Query: 480 SL-----VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-FSICPDARKFSSLVI 533
                   LT+   +    + ++D   +T ++ L  P+ S  ++ F    +        +
Sbjct: 481 GTRVHPGRLTASQQARLGGALRRD---QTLFDLLRRPELSYDDVRFIGGLEEADLPVRAV 537

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           ++L+IE+ Y  Y  RQ +E +  +   +  +P+  DY+++  LS E++E+L+ ++P  + 
Sbjct: 538 QQLEIEARYDGYVERQELENQRHQRYAQVRLPEALDYAAIDGLSTEVRERLTRMRPATVG 597

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA+++ G+TPAA++LLLI++++
Sbjct: 598 QAARLPGVTPAAISLLLIHLRR 619


>gi|261378094|ref|ZP_05982667.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria cinerea ATCC 14685]
 gi|269145545|gb|EEZ71963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria cinerea ATCC 14685]
          Length = 631

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/621 (46%), Positives = 392/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGDRISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  KQ  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTKQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNLQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|71898003|ref|ZP_00680208.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|71732247|gb|EAO34302.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
          Length = 629

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 382/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +  ++  Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAITGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGRLSALWAT 487

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQI 538
             N     +         +     + +  P+     L    S+ P      + V E+++I
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVD--DAQVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I
Sbjct: 546 SVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA++LLL+++++
Sbjct: 606 PGMTPAAISLLLVHLER 622


>gi|229917462|ref|YP_002886108.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Exiguobacterium sp. AT1b]
 gi|229468891|gb|ACQ70663.1| glucose inhibited division protein A [Exiguobacterium sp. AT1b]
          Length = 628

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/614 (45%), Positives = 386/614 (62%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAG EAA  +A++GA TA++T     +G M CNP+IGG  KG +VREIDAL
Sbjct: 8   FDVIVIGAGHAGIEAALASARMGAKTAMLTMNPDMVGFMYCNPSIGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  DA  IQ ++LN  KGPAVR  R QAD+  Y+  M++ +  + NL + Q  V 
Sbjct: 68  GGEMGRAIDATYIQMKMLNTSKGPAVRALRAQADKFQYQNHMKKVLEDEPNLLLRQALVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V    S  R   V++TTGTF+RG I IG+L   +G     PS  L   
Sbjct: 128 RLLIEDGEVRGVVTNTGSEYRAKAVIVTTGTFMRGQIIIGELAYESGPNNQMPSVELSKH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
             +   D  R KTGTP R+DGKTI + KTE Q  DE    FS+  TD     QI C +T 
Sbjct: 188 LEELGLDLVRFKTGTPPRIDGKTIDYSKTEIQPGDENPSFFSYTSTDLNPIEQIPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH++I EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+ 
Sbjct: 248 TSERTHQLIDENLHRSPMYSGAIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRDTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST++PE++QHQ +RTIPGLE   ++RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 308 IYVQGFSTSMPEDVQHQMLRTIPGLENSEMMRPGYAIEYDAVVPTQLWPTLETKAVPGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A K    D +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGIMAGINAACKVLGKDPVILDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+ IG ++G + E R     +           L SLV+ 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLSDIGYEIGLLSEDRHTHLNEKRVAIEKEVKRLASLVVK 487

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                N    S+      +   A   L  P+ S + L ++ P   + S  V E+++I+  
Sbjct: 488 PTPEVNAMLESVGAHPLKEATHANILLKRPEVSYEALMTVVPSTEELSYEVKEQVEIQVK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++++  E++ IP++ DY ++  L+ E K+KL  ++P ++ QAS+I G+
Sbjct: 548 YEGYISKQLEQVEKMRRMEEKRIPENLDYDAIGGLATEAKQKLKQVRPLSIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
            PA +++LL+YI++
Sbjct: 608 NPADVSILLVYIEQ 621


>gi|254483151|ref|ZP_05096384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine gamma proteobacterium HTCC2148]
 gi|214036522|gb|EEB77196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine gamma proteobacterium HTCC2148]
          Length = 643

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 284/619 (45%), Positives = 387/619 (62%), Gaps = 9/619 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIVIGGGHAG EA   +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+E+
Sbjct: 12  KQQFDVIVIGGGHAGTEACLASARMGCRTLLLTHSVDTLGQMSCNPAIGGIGKSHLVKEV 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MGR  D AGIQFRVLN +KGPAVR  R QADR LYR A+++ +  QENL + Q 
Sbjct: 72  DALGGAMGRATDLAGIQFRVLNSRKGPAVRATRAQADRVLYRNAIRQMLEGQENLSIFQQ 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  ++   + Q   + R   VVLTTGTFL G +HIG      GR GD PS +L
Sbjct: 132 PVDDLLIESGVVVGAITQMGVVFRAPRVVLTTGTFLGGKLHIGMENSAGGRAGDPPSIAL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQIEC 240
                +  F   RLKTGTP R+D +++ + + ++Q+ DE L   SFM   D+   ++  C
Sbjct: 192 AQRLRELPFRVERLKTGTPPRIDARSVDFSELDEQWGDEPLPVMSFMGSVDEHPEQRC-C 250

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S ++SG I+  GPRYCPS+EDKI RF ++N HQ+F+EPEGL
Sbjct: 251 WITHTNERTHDIIRAGLDRSPMFSGVIEGTGPRYCPSVEDKIHRFADKNSHQVFIEPEGL 310

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +YPNGIST+LP ++Q   + +I G E  +I RPGYAIEYD+ +P++L  +LETK +
Sbjct: 311 TSPELYPNGISTSLPFDVQIDLVHSIKGFENAHITRPGYAIEYDFFDPRDLQSSLETKAL 370

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAAAQGL+AG+N+A         C  R ++YIGV++DDL + G 
Sbjct: 371 PGLYFAGQINGTTGYEEAAAQGLLAGLNAALAVKGEQAWCPRRDEAYIGVLVDDLITMGT 430

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           +EPYRMFTSRAE+R+ LR DNAD RLT  G +LG +G+ R +RF +           L S
Sbjct: 431 MEPYRMFTSRAEHRLLLREDNADLRLTGKGRELGLVGDARWQRFEQKSDAIVSEAERLGS 490

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSL-VIERL 536
             L   +  +  ++ K        Y   + L  P+    ++  +       + L   E++
Sbjct: 491 TWLQPGSAEAEKLADKLTSPLAREYSLADLLKRPELDYADIAGL--KGEPTTDLQAAEQV 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I++ YA Y  RQ  +   ++  E   +P D DY  +  LSNE+K+KL   +P  L +A 
Sbjct: 549 AIQAKYAGYIDRQQGDIDRLRRYENAALPADLDYEQVDGLSNEVKQKLGEGRPDTLARAG 608

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LLLIY+KK
Sbjct: 609 RIPGVTPAAVSLLLIYLKK 627


>gi|298370285|ref|ZP_06981601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281745|gb|EFI23234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 634

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/618 (46%), Positives = 393/618 (63%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 11  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 70

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 71  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 130

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 131 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 190

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 191 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 251 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFAAKDSHQIFLEPEGLTT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + G
Sbjct: 311 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTVQG 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 371 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 431 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 490

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 491 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 550

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 551 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 610

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 611 ISGVTPAAVALLMVHLKR 628


>gi|83746959|ref|ZP_00944005.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Ralstonia solanacearum UW551]
 gi|207744823|ref|YP_002261215.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum IPO1609]
 gi|83726379|gb|EAP73511.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Ralstonia solanacearum UW551]
 gi|206596233|emb|CAQ63160.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum IPO1609]
          Length = 647

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/629 (45%), Positives = 387/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNEHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+GL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIAGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLVTRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEAGRSLGVVDDARWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA-----RKFSS 530
               L +     +  K   +  +  + L  P+ + ++L  +      P+A        + 
Sbjct: 487 NPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP 
Sbjct: 547 QIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|326484523|gb|EGE08533.1| mitochondrial translation optimization protein [Trichophyton
           equinum CBS 127.97]
          Length = 693

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/633 (45%), Positives = 392/633 (61%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEGK 154

Query: 124 VA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA            N  +  I  + ++   +I    V++TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVISKENKTSLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDSV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF  +  
Sbjct: 275 QIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKNKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +IG
Sbjct: 393 SLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + + R ++F +  +
Sbjct: 453 IMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDERWRQFNETKE 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY----PDFSIQNLFSICPDA 525
           + ++L++LL++    S   +      + D   R+A+E LS+    PD  I ++ S     
Sbjct: 513 QMSYLQALLENTKHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSPDDVIPHIESAPGTI 572

Query: 526 RKFSSLVIE---RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              SS   E   R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E ++
Sbjct: 573 HSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 633 VLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|261380643|ref|ZP_05985216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria subflava NJ9703]
 gi|284796623|gb|EFC51970.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria subflava NJ9703]
          Length = 631

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/622 (46%), Positives = 395/622 (63%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSADMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++ PDA+  ++L   V+
Sbjct: 485 TTWYTPQKLAEEEQLRVFGQKLSREANLHDLLRRPNLDYATLMTL-PDAQPETALADSVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|145301183|ref|YP_001144024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166222904|sp|A4STQ4|MNMG_AERS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|142853955|gb|ABO92276.1| glucose inhibited division protein A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 629

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 392/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E+
Sbjct: 4   HEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M R  D AGIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q 
Sbjct: 64  DALGGIMARATDLAGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +L
Sbjct: 124 ACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +      RLKTGTP R+D +++     + Q+ D+    FSF+ D   + RQ+ C 
Sbjct: 184 AQRLREMPLRIDRLKTGTPPRIDARSVDLSVMQAQYGDDPRPVFSFIGDASQHPRQVPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL 
Sbjct: 244 VTHTNERTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYD+ +P++L   +E+K I 
Sbjct: 304 THELYPNGISTSLPFDVQVQIVRSIRGFENAHITRPGYAIEYDFFDPRDLKANMESKYIG 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+  ++   D     R  +Y+GVMIDDL++ G  
Sbjct: 364 NLFFAGQINGTTGYEEAAAQGLMAGLNAGLRAQDKDPWHPRRDQAYMGVMIDDLSTLGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLTAIGRELGLVDDERWGKFNIKMEQVELERQRMRST 483

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +  ++ S  +++   +    + +   E L  P+ +   L +I       S     ++++
Sbjct: 484 WIHPQHPSLEAVNALVNTPLTREQNLEELLRRPEVTYDALMAIEGVGPALSDHAAADQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  + QAS+
Sbjct: 544 IQIKYAGYIERQYDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPETIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK+
Sbjct: 604 ISGITPAAISILLVHLKKH 622


>gi|17548045|ref|NP_521447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia solanacearum GMI1000]
 gi|21263662|sp|Q8XU65|MNMG_RALSO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|17430351|emb|CAD17116.1| probable trna uridine 5-carboxymethylaminomethyl modification
           enzyme gida(glucose-inhibited division protein a)
           [Ralstonia solanacearum GMI1000]
          Length = 647

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 386/630 (61%), Gaps = 17/630 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM--TDKITNRQIECGI 242
             +     GRLKTGTP R+DG+TI +   E Q  D   +P FSF+  TD +  RQ+ C +
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEAQPGDLDPVPVFSFLGRTD-MHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLNRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLESKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +          R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKAAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRDLGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA-----RKFS 529
           +    L +     +  K   +  +  + L  P+ + ++L  +      PDA        +
Sbjct: 486 VNPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPDAPLADEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGANENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|328699223|ref|XP_001949953.2| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 1
           [Acyrthosiphon pisum]
          Length = 657

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/634 (44%), Positives = 416/634 (65%), Gaps = 21/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+GGGHAG EA + AA++GAST L+THK S++G MSCNP+ GG+GKGHL+REI
Sbjct: 28  SKQYDVIVVGGGHAGTEACSAAARMGASTLLVTHKKSSVGEMSCNPSFGGIGKGHLMREI 87

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQ 121
           DALDGL  ++ D +GI +++LN +KGPAV G R Q DR+LY++ MQ E+     NL++I+
Sbjct: 88  DALDGLCAKICDLSGIHYKILNRRKGPAVWGLRAQVDRKLYKMYMQAELFENTPNLNIIE 147

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V     + N   + +++++ ++IR   V+LTTGTFL G ++ G    P GR+   PS 
Sbjct: 148 GSVDNILLDNNNQCTGVLLENGTLIRTKCVILTTGTFLNGEMYSGMTVKPGGRINSKPSI 207

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---Q 237
            L N+  +  F+TGR+KTGTP R++ ++I +     Q  D+   PFSFM + +  +   Q
Sbjct: 208 GLANTLKRLGFNTGRMKTGTPPRIEKQSINFTNLNYQSGDDLPTPFSFMNNSVWLKPEDQ 267

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I+  +T TN + H+I+++N+  +     ++K  GPRYCPS+E K ++F +R+ HQI+LE 
Sbjct: 268 IKSYLTYTNSKVHQIVIDNLSVNRHIKEEVK--GPRYCPSLESKSLKFRDRH-HQIWLEI 324

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +++VVYPNG+S  LPE++Q + IR+I GLE       GY +EYDY++P+EL+PTLET
Sbjct: 325 EGFDSNVVYPNGLSCTLPEDLQVKMIRSINGLENAQHYISGYGVEYDYVDPRELYPTLET 384

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI  LF AGQINGTTGYEEAAAQG++AGIN+   S   + +  SRT++YIGV++DDLT+
Sbjct: 385 KKIGHLFFAGQINGTTGYEEAAAQGILAGINAGASSLNRNSLTLSRTEAYIGVLVDDLTT 444

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G  EPYRMFT RAE+R+ LRPDNAD RLT  G  +GC+    + R+ + +   + L   
Sbjct: 445 QGTDEPYRMFTGRAEFRLHLRPDNADIRLTQKGYDIGCVS---KTRYDQTLSIRSSLEEG 501

Query: 478 LKSLVLTSKNL----SSTSISFKQDGKTRTAYEF--LSYPDFSIQNLFSICPD--ARKFS 529
           +K L   S+ +     S  +   ++ +T+TA+E   LS    +++ L  I PD    +F 
Sbjct: 502 IKLLTSVSQTMYKWKKSLGLKTSRNPETKTAFEILGLSNEGITLRQLEMILPDNFGGQFE 561

Query: 530 SLVI-ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSIL 587
              I ERL+IE+ Y A T  Q  + + ++ ++  L+PKD DY+    ++S E  EKLS +
Sbjct: 562 DNRIRERLKIEALYQASTYDQQEDIERVEVDQSLLLPKDIDYTHTSLSISKEEIEKLSYI 621

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P  +  A +I G+ P+ +  LL YIK   + ++
Sbjct: 622 QPQTIGAAGRIPGIKPSTVLRLLYYIKNQKINIS 655


>gi|71276642|ref|ZP_00652914.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Dixon]
 gi|71900051|ref|ZP_00682195.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|170730097|ref|YP_001775530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa M12]
 gi|71162569|gb|EAO12299.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Dixon]
 gi|71730194|gb|EAO32281.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|167964890|gb|ACA11900.1| glucose inhibited division protein A [Xylella fastidiosa M12]
          Length = 629

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 381/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +  ++  Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIRNSASHPSQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLDLVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECRRLSALWAT 487

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQI 538
             N     +         +     + +  P+     L    S+ P      + V E+++I
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRIPSLGPGVD--DAQVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I
Sbjct: 546 SVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA++LLL+++++
Sbjct: 606 PGMTPAAISLLLVHLER 622


>gi|258622945|ref|ZP_05717960.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Vibrio mimicus VM573]
 gi|258584728|gb|EEW09462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Vibrio mimicus VM573]
          Length = 631

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
              +   +        L  T +S +  G+     + L  P+ + + L ++         S
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFTPALEDS 536

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKQVKGLSNEVVLKLSTTKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|146297755|ref|YP_001181526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166222920|sp|A4XN50|MNMG_CALS8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145411331|gb|ABP68335.1| glucose inhibited division protein A [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 626

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/613 (44%), Positives = 388/613 (63%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA   A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDIVVVGAGHAGCEAALACARLGLKTIVFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  Y+L M+R + SQ NLD+ QGEV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRARYKLYMKRVLESQPNLDIRQGEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ + +   ++ R   VVL TGTFL G I IG+     G  G  P+  L  S
Sbjct: 128 DILVEDGKVTGVKLTTGAIFRAKAVVLATGTFLGGRIIIGETVYDGGPDGMHPAKYLTES 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K   +  R KTGTPAR+  +++ + K + Q  DE + PFSF  + +   Q+ C +T T
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQLGDEVITPFSFEHETLEIEQVPCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETHRII EN+  + +++G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP G +T+ +
Sbjct: 248 TEETHRIIRENLHRAPLFTGLIQGVGPRYCPSIEDKVVRFADKPRHQVFIEPMGRDTEEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++ GLE V I+RP YAIEYD INP +L  TL+ KKI GLF 
Sbjct: 308 YVQGMSSSLPEDVQIKMYRSVIGLENVQIMRPAYAIEYDCINPLQLEATLQFKKIKGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY-NFLRSLLKSLVLT 484
           + TSRAEYR+ LR DNAD RLT IG ++G I + R ++F K  +   + +  L K+++  
Sbjct: 428 IMTSRAEYRLILRQDNADLRLTEIGYRIGLISQERYEKFLKKKKMIEDEIERLKKTVIAP 487

Query: 485 SKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           S  ++   I       +      E L  P+ S + L  I P        V E ++IE  Y
Sbjct: 488 SDKVNKFLIEHGSSPISTGVKLSELLKRPELSYEALREIDPQRPDLPRSVKEEVEIEIKY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q+ + ++ K  E + IP+  DY+ +  LS E K+KLS ++P ++ QAS+I G++
Sbjct: 548 EGYIKKQLQQIEQFKKLENKKIPEWVDYNQISGLSTEAKQKLSQIRPASIGQASRISGVS 607

Query: 603 PAALNLLLIYIKK 615
           PA +++LLI++++
Sbjct: 608 PADISVLLIWLEQ 620


>gi|89100946|ref|ZP_01173793.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
 gi|89084355|gb|EAR63509.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
          Length = 629

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/619 (44%), Positives = 386/619 (62%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA   A +LGA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVIGAGHAGVEAGLAAGRLGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I ++ N+ ++QG V
Sbjct: 67  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFTYQHEMKKTIENEPNITLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +     TVV+TTGTFLRG I +G+LK  +G     PS  L  
Sbjct: 127 EKLIVEDGVCKGVVTMTGAAYSAKTVVITTGTFLRGEIILGELKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDMVRFKTGTPPRVNSHTIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNETTHSLIDDNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + +RTIPGLE V ++R GYAIEYD I P +L+PTLETKK+  L+
Sbjct: 307 VYVQGLSTSLPEDVQQKILRTIPGLENVQMMRAGYAIEYDSIVPTQLWPTLETKKVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+   +   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAGLNALGKEELILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G K+G I + R  RF +  Q     +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDAGHKIGLISDERYGRFTEKKQAIEAEKERLRSIII- 485

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K  +      K  G +       A + L  P+ S +++    P        V E+++I+
Sbjct: 486 -KPSAEVQEMIKNQGGSELKDGIRASDLLKRPEMSYEHIKLAAPADADLDFDVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + +P++ DY ++  L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 LKYEGYIEKSLQQVERLKKMENKKVPENIDYDAINGLASEARQKLKEVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  V
Sbjct: 605 GVNPADISILLVYLEQGRV 623


>gi|300702502|ref|YP_003744102.1| glucose-inhibited division protein a, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CFBP2957]
 gi|299070163|emb|CBJ41454.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CFBP2957]
          Length = 647

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/629 (45%), Positives = 387/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVESDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+GL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAITGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEAGRGLGVVDDTRWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA-----RKFSS 530
               L +     +  K   +  +  + L  P+ + ++L  +      P+A        + 
Sbjct: 487 NPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP 
Sbjct: 547 QIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|229530212|ref|ZP_04419601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae 12129(1)]
 gi|229332345|gb|EEN97832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae 12129(1)]
          Length = 631

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  M+  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYMRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQMQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|262172752|ref|ZP_06040430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus MB-451]
 gi|261893828|gb|EEY39814.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus MB-451]
          Length = 631

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERLRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
              +   +        L  T +S +  G+     + L  P+ + + L ++         S
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFTPALEDS 536

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|241759087|ref|ZP_04757198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria flavescens SK114]
 gi|241320689|gb|EER56942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria flavescens SK114]
          Length = 631

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/619 (46%), Positives = 395/619 (63%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDITLDGDRISGVMTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++    P+ R     VIE++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAEPECR-LPENVIEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+ LL++++K+
Sbjct: 607 RISGITPAAVALLMVHLKR 625


>gi|325295306|ref|YP_004281820.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065754|gb|ADY73761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 634

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 295/629 (46%), Positives = 394/629 (62%), Gaps = 19/629 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIV+G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KG +VR
Sbjct: 1   MWDGIYDVIVVGAGHAGCEAALAAARMGCKTALFTVNVDKIAEMSCNPAIGGVAKGTVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR+LN +KGPAVR PR QAD+  YR  M++ I +  NL+++
Sbjct: 61  EIDALGGEMAKNIDETGIQFRILNRRKGPAVRAPRAQADKYAYRDRMRKIIENTPNLEIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +V   N+      VV+T GTFL+G I IG  +   GRM +  +N
Sbjct: 121 QQIVDDIIVEDGKVKGVVTHINARYGAKAVVVTAGTFLKGKIFIGFKEFEGGRMWEPAAN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L N +++  F   RLKTGTP RLDG TI + K E+Q  DE    FS+ T+     QI C
Sbjct: 181 KLSNFYIRHGFKVARLKTGTPVRLDGTTIDFSKMERQDGDEPPPFFSYWTEPKEIEQIPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            +T T  ETHRII EN+  S +Y G+ K     G RYCPSIEDKIV+F ++  H +F+EP
Sbjct: 241 WLTYTTPETHRIIKENLHRSPMY-GECKLISGVGVRYCPSIEDKIVKFPDKERHHVFVEP 299

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT   YPNG ST+LP ++Q + IR+IPGLE   IIRP YAIEYD+++P  L+PTLET
Sbjct: 300 EGRNTVEFYPNGTSTSLPFDVQEKIIRSIPGLENAKIIRPAYAIEYDFVDPTHLYPTLET 359

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLT 416
           K I GLF AGQINGTTGYEEAA QG+VAGIN+A  + NK +     R ++YIGVMIDDL 
Sbjct: 360 KIIKGLFNAGQINGTTGYEEAAGQGIVAGINAALYALNKDERFILGRDEAYIGVMIDDLV 419

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYR+FTSRAEYR+ +R DNAD RL   G + G +   + +R  +   +Y  ++ 
Sbjct: 420 NKGVREPYRLFTSRAEYRLLIRYDNADYRLAKYGYRFGLLTREQYERVKR---KYETIKV 476

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNL-----FSICPDAR 526
            ++ L          +   ++ G T     +T YE L  P+  +  +     F +  + R
Sbjct: 477 FIEKLKEVKVKPEVINPVLEKAGSTPLKESKTVYEVLKRPEVKLYEILKVISFKLDIEDR 536

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           K    ++E ++IE  Y  Y  RQ+ + K+ +  E   IP+DFDYS +P +S E K+KL  
Sbjct: 537 KLLEEILEEVEIEVKYEGYIKRQLEDVKKFRKLENVKIPQDFDYSIVP-ISTEEKQKLKE 595

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +KP  L QA+++EG+ PA++ +L IYI+K
Sbjct: 596 MKPLTLGQAARLEGIRPASIPILAIYIEK 624


>gi|56477079|ref|YP_158668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aromatoleum aromaticum EbN1]
 gi|81170514|sp|Q5P4J6|MNMG_AZOSE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56313122|emb|CAI07767.1| glucose inhibited division protein A [Aromatoleum aromaticum EbN1]
          Length = 652

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/616 (46%), Positives = 388/616 (62%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARIGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q         VVLT GTFL G+IH+G     AGR GD P+ SL   
Sbjct: 127 DLTVSGDRVTGVVTQIGLAFEAPAVVLTAGTFLNGLIHVGLDNYSAGRAGDPPAISLGAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLD +TI +   ++Q  D+ +  FSF+     + +Q+ C IT 
Sbjct: 187 LKELALPQGRLKTGTPPRLDARTIDFSVMQEQPGDDPVPVFSFLGRASQHPQQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  H IFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKTSHNIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I GLE   I+RPGYAIEYDY +P+ L  +LETK   GLF
Sbjct: 307 IYPNGISTSLPFDVQLAVVRSIRGLENAFILRPGYAIEYDYFDPRNLKSSLETKSFHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVAGREAWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F +         + L++    
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTEKGRELGLVDDVRWAAFCEKRDAIERETARLRAAWAH 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
              + +     +  K   +    +E L  P+     L S+   P+       VIE+++I 
Sbjct: 487 PARVPAVDAERVVGKALEREYRFFELLRRPNTRYAELMSLPGAPENPATDPQVIEQIEIA 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E  +    E  L+P D DYS +  LS E+++KL++ KP  L QA +I+
Sbjct: 547 AKYQGYIDRQQGEVAKQLQAESTLLPADLDYSRVRGLSKEVQQKLNLHKPGTLGQAGRIQ 606

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++LL++++K+
Sbjct: 607 GVTPAAISLLMVWLKR 622


>gi|207722121|ref|YP_002252559.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum MolK2]
 gi|206587295|emb|CAQ17879.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum MolK2]
          Length = 647

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNEHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+GL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIAGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+       +     R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLHVQGKEAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEAGRSLGVVDDTRWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA-----RKFSS 530
               L +     +  K   +  +  + L  P+ + ++L  +      P+A        + 
Sbjct: 487 NPAILPTADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP 
Sbjct: 547 QIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|15838697|ref|NP_299385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa 9a5c]
 gi|21263697|sp|Q9PBN4|MNMG_XYLFA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9107234|gb|AAF84905.1|AE004026_6 glucose inhibited division protein A [Xylella fastidiosa 9a5c]
          Length = 629

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/617 (47%), Positives = 381/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRALYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +  ++  Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGAGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG I + R   F    +        L +   T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLIDDARWAHFNAKQEAVARECERLSAFWAT 487

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQI 538
             N     +         +     + +  P+     L    S+ P      + V E+++I
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVD--DAQVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I
Sbjct: 546 SVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA++LLL+++++
Sbjct: 606 PGMTPAAISLLLVHLER 622


>gi|296126685|ref|YP_003633937.1| glucose inhibited division protein A [Brachyspira murdochii DSM
           12563]
 gi|296018501|gb|ADG71738.1| glucose inhibited division protein A [Brachyspira murdochii DSM
           12563]
          Length = 616

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/613 (45%), Positives = 385/613 (62%), Gaps = 7/613 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG +T +I+    TIG MSCNP+IGG+ KG +V+E
Sbjct: 1   MNNKYDVIVVGAGHAGIEAALSSARLGMNTLIISINLDTIGQMSCNPSIGGVAKGTIVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +Q NL + Q
Sbjct: 61  IDALGGEMGLLIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEAAKTLYAQNNLTLHQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N++  +  +      C  V+LTTGTFL G+IHIG  +  AGR+G+ P+  
Sbjct: 121 DIVTEIVVENNVLKGLKTERGREYECDAVILTTGTFLNGLIHIGPYQKQAGRIGELPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++      + GRLKTGTPAR+D  +I +D  E Q  DE ++PFSF+ +KI   Q  C 
Sbjct: 181 LSDNLRALGLEVGRLKTGTPARVDYNSINFDILEMQKGDEEIVPFSFLDEKIDIVQEPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+   H++I +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E   
Sbjct: 241 ITYTDTNIHKLIQDNIHLSPMYSGAITGIGPRYCPSIEDKVVRFADKPRHQLHLERESYR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY NG S++LPEE+Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI 
Sbjct: 301 TNEVYINGFSSSLPEEVQIKMIRSLKGLEEVKILKPAYAVEYDYVNPIELKPTLETKKIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGT+GYEEAA QGL+AGIN+A K  K       R+D YIGV+IDDLT+KG  
Sbjct: 361 GLFLAGQINGTSGYEEAACQGLMAGINAALKIKKEAPFILKRSDGYIGVLIDDLTAKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R  +     ++   L   L   
Sbjct: 421 EPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLDKVRDKKRKTQILVEYLNKR 480

Query: 482 VLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            LT K   +  + F ++ K   + T    +  P+  I  L S+  D   ++  V+   +I
Sbjct: 481 TLTQK--EAEDLGFTKEAKEYRSMTLSSIIKRPECGIDMLVSLIDD--NYNKDVLNNAEI 536

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  R + E ++I+  E  LIP+DFDYS+L ++  +   KL   KP+N+ QA +I
Sbjct: 537 AIKYEGYIARYLNEIRDIEKYENMLIPEDFDYSTLKSVKIDAINKLKQYKPYNISQALRI 596

Query: 599 EGMTPAALNLLLI 611
             +  + +++L++
Sbjct: 597 PEVDKSVVHILIL 609


>gi|37785809|gb|AAR02616.1| GidA [Aeromonas hydrophila]
          Length = 629

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 394/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E+
Sbjct: 4   HEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q 
Sbjct: 64  DALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +L
Sbjct: 124 ACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +      RLKTGTP R+D +++ +   + Q  D+    FSF+ +   + RQ+ C 
Sbjct: 184 AQRLRELPLRIDRLKTGTPPRIDARSVDFSVMQAQHGDDPRPVFSFIGNASQHPRQVPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL 
Sbjct: 244 VTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I 
Sbjct: 304 THELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCIG 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R  +YIGVM+DDL++ G  
Sbjct: 364 NLFFAGQINGTTGYEEAAAQGLLAGLNAALRAQGKDPWHPRRDQAYIGVMMDDLSTLGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLTAIGRELGLVDDERWSKFNAKMEQVEQERQRMRST 483

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQ 537
            +  ++ S  +++   +    + ++  E L  P+ +   L +I       S S   ++++
Sbjct: 484 WIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMAIEGVGPALSDSAAADQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  + QAS+
Sbjct: 544 IQIKYAGYIERQHDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPQTIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LL+++KK+
Sbjct: 604 ISGITPAAISILLVHLKKH 622


>gi|298528148|ref|ZP_07015552.1| glucose inhibited division protein A [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511800|gb|EFI35702.1| glucose inhibited division protein A [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 631

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/614 (45%), Positives = 379/614 (61%), Gaps = 8/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+I++G GHAGCEAA  A+KLG +T ++T+    IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 9   FDLIIVGAGHAGCEAAHAASKLGLATLVLTNNIDRIGHLSCNPAIGGLAKGHMVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD +GIQFR LN +KGPAV+  R Q DR  Y  + Q  + S ++L +++    
Sbjct: 69  GGIMGLWADESGIQFRRLNTRKGPAVQATRAQMDRSRYLFSAQSTLFSLDHLYIMEAFAE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   I  +            V+LTTGTFL+G IH+G      GR+GD  S  L +S
Sbjct: 129 DLLVTSGRIRGVRTAFGEDFYAPAVLLTTGTFLQGQIHVGLRSSSGGRLGDPASAGLSHS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K   D GRLKTGT  RL  ++I +   ++Q  D+    FSF     T RQI C IT T
Sbjct: 189 LRKLGLDLGRLKTGTVPRLLKESIDFSVMQEQHGDDPPPRFSFRGAPRTLRQIPCHITYT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +  TH  I   +  S +Y G I   G RYCPSIEDK+ RF E+  HQIF+EPEGL++  V
Sbjct: 249 SSSTHECINAGLDRSPMYQGLIHGTGARYCPSIEDKVARFPEKERHQIFVEPEGLDSHEV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP ++Q + ++TIPGLEK  I+RPGYAIEYDYI+P +L P LET+ + GL+ 
Sbjct: 309 YPNGISTSLPLDVQKKMLQTIPGLEKAIIVRPGYAIEYDYIHPTQLTPHLETRAVQGLYS 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N   +S+  D I   R  +Y+ V++DDL ++G  EPYR
Sbjct: 369 AGQINGTSGYEEAAAQGLWAALNIYARSHGTDFI-LKRDQAYMAVLVDDLITRGTSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLTP+G +LG + +   K F    Q+   L+  L+S+V+  
Sbjct: 428 MFTSRAEYRLLLREDNADERLTPLGRELGLVDDAYWKIFTARQQQMQSLKEALRSMVIRP 487

Query: 486 KNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               ST    +Q G     ++ +  + L  P  SI+ L  +      +   ++ER+Q + 
Sbjct: 488 DQ--STVKILEQIGAHPPKRSASLADILKQPSISIRELKPLWSGLDDYEDAILERVQTDI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            +  Y  RQ   A+ I+  E   +P+D DY+ +  LS E  EKLS ++P  L QA +I G
Sbjct: 546 KFEGYISRQREMAERIRHLEDTGLPRDLDYTRVSGLSREAVEKLSAIRPETLGQAGRISG 605

Query: 601 MTPAALNLLLIYIK 614
           +TPA L+ L IY+K
Sbjct: 606 ITPATLSALQIYLK 619


>gi|170050885|ref|XP_001861513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Culex quinquefasciatus]
 gi|167872390|gb|EDS35773.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Culex quinquefasciatus]
          Length = 658

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/628 (45%), Positives = 411/628 (65%), Gaps = 27/628 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+GGGHAG EA A AA++GA T L+T K +TIG MSCNP+ GG+GKGHL+REIDA
Sbjct: 32  SYDVVVVGGGHAGTEACAAAARMGARTLLVTQKRATIGEMSCNPSFGGIGKGHLIREIDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+ GR  D +G+Q++VLN ++GPAV GPR Q DR LYR  +QRE+   E LD+++  V
Sbjct: 92  LDGVCGRACDRSGVQYKVLNKRRGPAVWGPRAQIDRGLYRAVIQRELGETEGLDIVEASV 151

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  I +++  +IR  ++V+TTGTFLRG I+IG    PAGR+GD P+  L  
Sbjct: 152 EDIVLEGGRIEGISLKNGDVIRTKSLVITTGTFLRGQINIGLETRPAGRIGDEPAIGLAT 211

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQIECG 241
           S  +  F   RLKTGTP R+   +I +   E+   D   +PFSFM D++      Q++C 
Sbjct: 212 SLEQLGFKLARLKTGTPPRIKASSIDFSTLERHPGDNPPVPFSFMNDRVWLHAEDQLDCF 271

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+ E + I+  N+  +   + ++   GPRYCPSIE K++RFG +  HQI+LEPEG +
Sbjct: 272 LTHTSPEVNEIVKRNLHCNRHVTEELT--GPRYCPSIESKVLRFGGKT-HQIWLEPEGFD 328

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++++YPNG+S  LPEE Q + +R + GLEK  + RPGY +EYD+++P+EL PTLETK++ 
Sbjct: 329 SELIYPNGLSCTLPEEEQVKLVRCLRGLEKAEVARPGYGVEYDFVDPRELLPTLETKRVR 388

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL  AGQINGTTGYEEAAAQG++AG N+A K  + D +  SRT+ Y+GV++DDLT+ G  
Sbjct: 389 GLLFAGQINGTTGYEEAAAQGVLAGANAAAKVLERDQLLISRTEGYLGVLVDDLTTLGTN 448

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLRPDNAD RLT  G +LG + E R        Q+   +RS ++  
Sbjct: 449 EPYRMFTSRAEFRLSLRPDNADLRLTEKGYQLGLVSEER-------YQQMVTIRSKIRRA 501

Query: 482 VLTSKNLSSTSISFKQ-----DGKT---RTAYEFL--SYPDFSIQNLFSICPDARKFSS- 530
           V    ++   S ++K+      GK+   ++A+E L  S  D   + L  + P    + S 
Sbjct: 502 VELLSDIKKGSNTWKEQLRLAQGKSSVYKSAFEMLAISVDDVKTEQLCELEPTVLGWISE 561

Query: 531 --LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSIL 587
             ++ ERL+IE+ Y+     Q+ E +E++  E+  IPK  DY S    LS E +EKL  +
Sbjct: 562 DRVLCERLKIEALYSLSIQDQIKEVEEVQKHEQLHIPKSIDYLSKSLNLSFEEQEKLVHI 621

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  +  AS+I+G+TP+ +  L+ ++K+
Sbjct: 622 QPQTIAAASRIQGITPSTIVRLVRFVKQ 649


>gi|261410104|ref|YP_003246345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. Y412MC10]
 gi|261286567|gb|ACX68538.1| glucose inhibited division protein A [Paenibacillus sp. Y412MC10]
          Length = 628

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 390/617 (63%), Gaps = 12/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKETMEKEEKLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   IV Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  L +
Sbjct: 127 DQLIVEDGVCVGIVTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVKLAH 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R+   TI + KTE Q  DE+   FS+ T    N Q+ C +T 
Sbjct: 187 NLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSVDTHKIINDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKNTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST++PE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ GLF
Sbjct: 307 YYVQGLSTSMPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVILDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI-------QEYNFLRSL 477
           R+ TSRAEYR+ LR DNAD RLT IG  +G I E   +R+AK++       QE   LR  
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISE---ERYAKFVLKKQLVEQEIERLRQT 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
               V  +  L +   +   DG        L  P+ +   + S+ P   +    + E+++
Sbjct: 484 KVKPVEVNAMLEAAGSAPIVDGSNMLT--ILRRPEITFAMVESLSPSPYELDEEMKEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+
Sbjct: 542 IQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDEINGLAMEARQKLNKIRPISIGQASR 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA +++LL+Y++
Sbjct: 602 IAGVTPADISILLVYLE 618


>gi|78043339|ref|YP_358879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577254|sp|Q3AG55|MNMG_CARHZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77995454|gb|ABB14353.1| glucose inhibited division protein A [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 631

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/614 (45%), Positives = 393/614 (64%), Gaps = 7/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  +A++G  T L+T     +  M CNPA+GG  KG +VRE+DAL
Sbjct: 8   YDVIVVGAGHAGVEAALASARMGLKTLLLTLSLDNVALMPCNPAVGGPAKGVVVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I  QENL + Q E  
Sbjct: 68  GGEMGINTDKTYIQIRMLNTGKGPAVRTLRAQADKRRYQEEMKKTIERQENLYLKQAETI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++ +  ++     VV+T+GT+L   I IG +  P+G  G   ++ L  S
Sbjct: 128 KILVEGEKVRGVLTRTGAVFTSRAVVVTSGTYLNSRIIIGDVHYPSGPAGFPYASLLSKS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F  GR KTGTPAR+D +T+ + K  +Q  D+R + FS+M++ I    + C +T T
Sbjct: 188 LADLGFKLGRFKTGTPARVDKRTVDFSKMIEQPGDDRPLYFSYMSEGIKRPNVSCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NLETH II+EN+  S +YSG+IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+T  +
Sbjct: 248 NLETHTIILENLHRSPLYSGEIKGVGPRYCPSIEDKVVRFSDKPRHQVFLEPEGLDTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + +RT+PGLE+V I+RP YAIEYDYI+P +L  TLE K I GLF 
Sbjct: 308 YVQGMSTSLPEDLQIKMLRTLPGLERVEIMRPAYAIEYDYIDPTQLKLTLEAKHIQGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG+VAGIN+A    + +     R+++YIGVMIDDL +KGV +PYR
Sbjct: 368 AGQINGTSGYEEAAGQGIVAGINAALYVKEKEPFILKRSEAYIGVMIDDLVTKGVTDPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK--SLVL 483
           + TSRAEYR+ LR DNAD RLT  G K+G + E R ++F + +++ N L   L+   +  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEKGYKIGLVTEERWRKFNERVEKINKLMEFLEENQVTP 487

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T +NL        S  + G   +  EFL  P+ +++ +  I     +F   V E+++I  
Sbjct: 488 TKRNLEIMEEYGTSPPKHGI--SGKEFLRRPEINMEAIEKIFAIDGQFPDDVKEQVEILV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ E +     E + +P DFDYS +  LS E  +KL+ +KP N+ QAS++ G
Sbjct: 546 KYEGYIEKQLKEIERFNKYEGKKLPPDFDYSKVKGLSAEAVQKLNAIKPENIGQASRVSG 605

Query: 601 MTPAALNLLLIYIK 614
           +TPA +++LLIY++
Sbjct: 606 VTPADISVLLIYLE 619


>gi|157694474|ref|YP_001488936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus SAFR-032]
 gi|166989734|sp|A8FJF9|MNMG_BACP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157683232|gb|ABV64376.1| glucose-inhibited division protein A [Bacillus pumilus SAFR-032]
          Length = 628

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/619 (44%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKKTMENEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +    +V Q  +  R  +VVLTTGTFL+G I +G L   +G     PS  L +
Sbjct: 127 DHLIVKDDECKGVVTQTGANYRAKSVVLTTGTFLKGRIILGDLSYSSGPNNQQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLADLGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+LETH+II EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSLETHQIIDENLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKISGL+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKISGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFAKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT +G  +G I + R     QK+ A   ++      ++K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYHIGLISQERFQAFQQKKEAIEAEKKRLYSVIIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + S   S  +DG    A + +  P+ + +++  + P      S V E+++I+
Sbjct: 487 PTAETQEFIRSLGGSELKDGI--RASDLMKRPEMNYESVVRLAPAETPLPSDVCEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E K+KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEAKQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|198426865|ref|XP_002123127.1| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform b (predicted) [Ciona intestinalis]
          Length = 652

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/637 (45%), Positives = 403/637 (63%), Gaps = 39/637 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVI++GGGHAGCEAA+ +A++GA T L+THK STIG MSCNP+ GG+GKGHL+REIDA
Sbjct: 16  SYDVIIVGGGHAGCEAASASARVGARTLLLTHKLSTIGEMSCNPSFGGIGKGHLIREIDA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+ GR+ D +GIQ+R+LN KKGPAV GPR Q DR LYR  MQ EI +  NLDV++G V
Sbjct: 76  LDGICGRICDISGIQYRMLNRKKGPAVWGPRAQIDRNLYRENMQTEIHNTINLDVMEGSV 135

Query: 125 AGFNTEKNI---------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
               T   +          + +++ D +M+    VVLT GTFLRG I+IG +   AGR+G
Sbjct: 136 EDLVTTDVVEATPETKCRCNGVILSDGTMLHAKGVVLTAGTFLRGQINIGMIVKGAGRIG 195

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           D+P+  L  +     F+ GRLKTGTP R+   ++ +        D    PFSF  +K+  
Sbjct: 196 DAPAVGLARTIENLGFEMGRLKTGTPPRIAKDSVNFSGMVAYGGDMPPHPFSFENEKVWI 255

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++Q+ C  T T  E  + I++ +  +     ++   GPRYCPSIE K+++F E++ H 
Sbjct: 256 DPDQQLTCYTTHTKPELEKCILDTLHMNKHVIEEVN--GPRYCPSIESKVLKFKEKS-HM 312

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
            +LEPEGL ++V+Y  G S  +PEE Q + +R I GLE   I RPGY +EYDY++P+++ 
Sbjct: 313 CWLEPEGLTSNVIYLQGFSCTMPEENQTEAVRMIQGLENAEITRPGYGVEYDYMDPRQVS 372

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLET K+ GL+ AGQINGTTGYEEAAAQGL+AG+N+ARK+ KL     +R++ YIGV++
Sbjct: 373 TTLETYKVKGLYFAGQINGTTGYEEAAAQGLIAGVNAARKAKKLSPFIVTRSEGYIGVLL 432

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG-MKLGCIGERR----QKRFAKY 467
           DDLT+ G  EPYRMFTSR E+R++LRPD AD RLT  G ++ GC+ E+R    +KR    
Sbjct: 433 DDLTTMGTNEPYRMFTSRTEFRMTLRPDTADERLTEKGFIEGGCVSEKRMNNTKKRVNLL 492

Query: 468 IQEYNFLRSLLKS----LVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
            +  + L+S+ K     L LT     NLS ++ +F      R   E        +  + S
Sbjct: 493 TEAVDVLKSVKKPKNKWLELTGGKPVNLSHSTNAFHFLADVRGPRE--------VDVVLS 544

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI---KFEEKRLIPKDFDYSSLPALS 577
           + P+ R        R ++ SS A Y+    +E K I   K EE+ +IP   DY ++P L 
Sbjct: 545 MFPETRAIMENTWLRNRLLSS-AVYSALLPVEQKNIEMVKREERLIIPDHIDYVNMPGLK 603

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            E++EKL+  +P N+  AS+I+G+TPA+L  LL ++K
Sbjct: 604 LEIREKLAKARPGNIAAASRIQGVTPASLVQLLKHVK 640


>gi|28198678|ref|NP_778992.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa Temecula1]
 gi|182681369|ref|YP_001829529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa M23]
 gi|32129540|sp|Q87DB3|MNMG_XYLFT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28056769|gb|AAO28641.1| glucose inhibited division protein A [Xylella fastidiosa Temecula1]
 gi|182631479|gb|ACB92255.1| glucose inhibited division protein A [Xylella fastidiosa M23]
 gi|307579816|gb|ADN63785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 629

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/617 (47%), Positives = 381/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+DG+T+ +   ++Q  D      SF+ +  ++  Q+ C IT+
Sbjct: 188 LRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGRLSALWAT 487

Query: 485 SKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQI 538
             N     +         +     + +  P+     L    S+ P      + V E+++I
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVD--DAQVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I
Sbjct: 546 SVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA++LLL+++++
Sbjct: 606 PGMTPAAISLLLVHLER 622


>gi|289579529|ref|YP_003478156.1| glucose inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
 gi|289529242|gb|ADD03594.1| glucose inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
          Length = 633

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 391/619 (63%), Gaps = 14/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKSQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+ 
Sbjct: 68  GGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQANMKYTLERQQNLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFESGPSGLFPANELSET 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPARVDKRSIDFSKMEMQPGDEVITPFSYMHDKIEIEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  +
Sbjct: 248 NKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVKVMRPAYAIEYDCIDPTQLKATLESKKIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPPVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT +G ++G + E R ++F  K IQ    ++ L   ++  
Sbjct: 428 MLTSRAEYRLLLRQDNADLRLTELGYEIGLVTEERYEKFLKKKIQLEKEMKRLAGVVIKP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDF---SIQNLFSICPDARKFSSLVIERL 536
           S+ +++  IS    G T        Y  L  P+    S + L    PD       V E++
Sbjct: 488 SEEVNNFLIS---RGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKQRPD--DILESVAEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  +Q+ + +  K  E + IP++ DY  +P LSNE KEKL+ ++P ++ QAS
Sbjct: 543 DINIKYEGYILKQLRQIEHFKALENKKIPENIDYYQIPGLSNEAKEKLTKIRPTSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 603 RISGVSPADISVLLIYMEQ 621


>gi|297545651|ref|YP_003677953.1| glucose inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843426|gb|ADH61942.1| glucose inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 633

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/619 (45%), Positives = 391/619 (63%), Gaps = 14/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKSQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+ 
Sbjct: 68  GGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQANMKYTLERQQNLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFESGPSGLFPANELSET 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPARVDKRSIDFSKMEMQPGDEVITPFSYMHDKIEIEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  +
Sbjct: 248 NKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPPVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT +G ++G + E R ++F  K IQ    ++ L   ++  
Sbjct: 428 MLTSRAEYRLLLRQDNADLRLTELGYEIGLVTEERYEKFLKKKIQLEKEMKRLAGVVIKP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDF---SIQNLFSICPDARKFSSLVIERL 536
           S+ +++  IS    G T        Y  L  P+    S + L    PD       V E++
Sbjct: 488 SEEVNNFLIS---RGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKQRPD--DILESVAEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  +Q+ + +  K  E + IP++ DY  +P LSNE KEKL+ ++P ++ QAS
Sbjct: 543 DINIKYEGYILKQLRQIEHFKALENKKIPENIDYYQIPGLSNEAKEKLTKIRPTSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 603 RISGVSPADISVLLIYMEQ 621


>gi|209696454|ref|YP_002264385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aliivibrio salmonicida LFI1238]
 gi|238058373|sp|B6EHU8|MNMG_ALISL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|208010408|emb|CAQ80754.1| glucose inhibited division protein [Aliivibrio salmonicida LFI1238]
          Length = 629

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/616 (46%), Positives = 393/616 (63%), Gaps = 13/616 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVIGGGHAGTEAALAAARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q NL + Q  V
Sbjct: 66  LGGLMAEAIDHSGIQFRTLNASKGPAVRATRAQADRALYKTYVRSVLENQPNLTLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R  +VVLT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 DDLIIENDKVIGAVTQMGLKFRAKSVVLTAGTFLGGQIHIGMENFSGGRAGDPSSITLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   RLKTGTP R+D +++ +   E Q  D     FSF+ ++  + +Q+ C IT
Sbjct: 186 RLRDRPFRIDRLKTGTPPRIDARSVDFSNLEAQPGDNPTPVFSFLGNRQQHPQQVNCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL T 
Sbjct: 246 HTNEKTHDVIRKNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQLQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKATYETKFIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  S   +     R ++Y+GV+IDDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLMAGLNASLFSQGKEGWSPRRDEAYMGVLIDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT  G +LG + + R  RF + ++     R  LK + +
Sbjct: 426 YRMFTSRAEYRLSLREDNADLRLTEQGRELGLVDDIRWSRFNEKVENIEKERQRLKDIWI 485

Query: 484 --TSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVIER 535
             TS+N+   +   K    +  +  + L  P+ +  +L +I       D ++ S    E+
Sbjct: 486 NPTSENIDQVNSILKTPIVREASGEDLLRRPEVTYSSLMTIEKFGPASDDQQAS----EQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E ++    E   +P D +Y+ +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQTKYAGYIQRQRDEIEKSLRHENTKLPFDLEYNKVKGLSNEVVAKLSDAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLI 611
           S+I G+TPAA+++LL+
Sbjct: 602 SRISGITPAAISILLV 617


>gi|52082647|ref|YP_081438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus licheniformis ATCC 14580]
 gi|52788046|ref|YP_093875.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus licheniformis ATCC 14580]
 gi|319648513|ref|ZP_08002729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus sp. BT1B_CT2]
 gi|81170519|sp|Q65CN2|MNMG_BACLD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52005858|gb|AAU25800.1| glucose-inhibited division protein [Bacillus licheniformis ATCC
           14580]
 gi|52350548|gb|AAU43182.1| GidA [Bacillus licheniformis ATCC 14580]
 gi|317389592|gb|EFV70403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus sp. BT1B_CT2]
          Length = 628

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/618 (44%), Positives = 392/618 (63%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVVVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V 
Sbjct: 68  GGEMAKNIDKTHIQMRLLNTGKGPAVRALRAQADKFQYQHEMKKTLENEPNLTMLQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q  +  R  TVVLTTGTFLRG I +G L   +G     PS  L   
Sbjct: 128 RLLIEDGECRGVITQTGAEYRSKTVVLTTGTFLRGKIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R++  +I + KTE Q  DE    FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDEVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHEIIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI GLF 
Sbjct: 308 YVQGLSTSLPEDVQRKMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKIPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG ++G I E R ++F +        +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGYQIGLISEERYQKFQEKKAAIEAEKKRLHSVIIKP 487

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T +N   + S   S  +DG   T  + +  P+ + + + ++ P  +K +  V E+++I+ 
Sbjct: 488 TKENQEYIRSLGGSELKDGIRAT--DLMKRPEMNYETVTALAPPEQKVAGDVAEQVEIQI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|20807573|ref|NP_622744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter tengcongensis MB4]
 gi|22095718|sp|Q8RAT8|MNMG1_THETN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 1; AltName: Full=Glucose-inhibited division
           protein A 1
 gi|20516110|gb|AAM24348.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Thermoanaerobacter tengcongensis MB4]
          Length = 633

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 392/617 (63%), Gaps = 10/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG ST         I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVCVVGLGHAGSEAALASARLGLSTVGFATNLDAIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+ 
Sbjct: 68  GGQMAINTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQMNMKHTLERQENLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG++   +G  G  P++ L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGEVDFESGPSGLFPASELSEA 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTP R+D ++I + K E Q  DE + PFSFM DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPPRVDKRSIDFSKMEIQPGDEVITPFSFMHDKIEIEQMPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II +NI  + +++G I   G RYCPSIEDK+V+F  R  HQIF+EPEG +T  +
Sbjct: 248 NEKTHKIIRDNIHRAPLFTGAITGVGVRYCPSIEDKVVKFPHRERHQIFIEPEGRDTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+K I GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKWIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKILNKPPVVLDRSQAYIGILIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT IG ++G + E R ++F  K IQ    +R L   +V  
Sbjct: 428 MLTSRAEYRLLLRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMRRLSTVMVRP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
           ++ +++  IS    G T        Y  L  P+   ++   + PD        V E++ I
Sbjct: 488 TEEVNNFLIS---RGSTPLVSGVDLYTLLKRPEVDYKSTKFLDPDRPDDILDSVAEQIDI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS+I
Sbjct: 545 NIKYEGYILKQLRQVEQFKAMENKKIPEDIDYYQISGLSNEAKEKLSKIRPTSVGQASRI 604

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA +++LLIY+++
Sbjct: 605 SGVSPADISVLLIYLQQ 621


>gi|117619063|ref|YP_858690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|166222903|sp|A0KQY9|MNMG_AERHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117560470|gb|ABK37418.1| glucose-inhibited division protein A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 629

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/624 (44%), Positives = 395/624 (63%), Gaps = 15/624 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E+
Sbjct: 4   HEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q 
Sbjct: 64  DALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +L
Sbjct: 124 ACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
                +      RLKTGTP R+D +++     + Q+ D+    FSF+ D   + RQ+ C 
Sbjct: 184 AQRLRELPLRIDRLKTGTPPRIDARSVDLSVMQAQYGDDPRPVFSFIGDASQHPRQVPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL 
Sbjct: 244 VTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I 
Sbjct: 304 THELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCIP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+  ++ + D     R  +YIGVM+DDL++ G  
Sbjct: 364 NLFFAGQINGTTGYEEAAAQGLLAGLNAGLRAQEKDAWHPRRDQAYIGVMMDDLSTLGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLTGIGRELGLVDDERWGKFNAKMEQVEQERQRMRST 483

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI------CPDARKFSSLV 532
            +  ++ S  +++   +    + ++  E L  P+ +   L +I       PD     +  
Sbjct: 484 WIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMAIEGVGPALPD-----TAA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            ++++I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  +
Sbjct: 539 ADQVEIQIKYAGYIERQHDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPQTI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
            QAS+I G+TPAA+++LL+++KK+
Sbjct: 599 GQASRISGITPAAISILLVHLKKH 622


>gi|261213272|ref|ZP_05927554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC341]
 gi|260837546|gb|EEX64249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC341]
          Length = 631

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVDNDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNDRTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
              +   +        L  T +S +  G+     + L  P+ + + L ++         S
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGE-----DLLRRPEMTYELLTTLPAYTPALEDS 536

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKQVKGLSNEVVLKLSTAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|288575406|ref|ZP_05976919.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria mucosa ATCC 25996]
 gi|288568066|gb|EFC89626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria mucosa ATCC 25996]
          Length = 631

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/618 (46%), Positives = 392/618 (63%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVSEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 608 ISGVTPAAVALLMVHLKR 625


>gi|262273123|ref|ZP_06050940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Grimontia hollisae CIP 101886]
 gi|262222879|gb|EEY74187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Grimontia hollisae CIP 101886]
          Length = 629

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/623 (47%), Positives = 400/623 (64%), Gaps = 17/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM R  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGLMARAIDKGGIQFRTLNASKGPAVRATRAQADRALYKAAVREALENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +V +     R   VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 NDLIVEQDQVTGVVTEMGLKFRARAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSIALAD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F   RLKTGTP R+D +T+ +   + Q  D+    FSFM  K+++  RQ+ C I
Sbjct: 186 RLRELPFRVDRLKTGTPPRIDARTVDFSVMQTQHGDDPCPVFSFMG-KVSDHPRQVPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL T
Sbjct: 245 TYTNEQTHDVIRKNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDKHQIFVEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q   IR+I G E   +IRPGYAIEYD+ +P++L  T ETK I G
Sbjct: 305 NELYPNGISTSLPFDVQMGIIRSIKGFENARVIRPGYAIEYDFFDPRDLKQTFETKFIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+A  +   +  C  R  +Y+GV+IDDL++ G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAALFAQDKEGWCPRRDQAYMGVLIDDLSTMGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLL 478
           PYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + +    QE   LRS  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLTEMGRELGLVDDERWARFNQKLENMEQETQRLRSTW 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                   +    +  T +S + +G+       ++Y D     +F+   +  + S    E
Sbjct: 485 IHPASEHADALNAILKTPLSREANGEDLLRRPEVTYNDLVANPVFAPAHEDLQAS----E 540

Query: 535 RLQIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++I+  YA Y  RQ  E  K I+ E  RL P D DY+ +  LSNE+  KL   +P  + 
Sbjct: 541 QVEIQIKYAGYINRQKEEIEKYIRHENTRL-PIDLDYTQIKGLSNEVVAKLRDARPETIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           +AS+I G+TPAA+++LL+++KK 
Sbjct: 600 KASRISGITPAAISILLVHLKKQ 622


>gi|270013418|gb|EFA09866.1| hypothetical protein TcasGA2_TC012014 [Tribolium castaneum]
          Length = 664

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 297/639 (46%), Positives = 417/639 (65%), Gaps = 32/639 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+GGGHAG EA+A AA++GA T L+THK  T+G MSCNP+ GG+GKGHL+REI
Sbjct: 27  DKNYDVIVVGGGHAGSEASAAAARMGAQTLLVTHKKETVGEMSCNPSFGGIGKGHLMREI 86

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQ 121
           DALDG+ GR+ D +GIQ++VLN +KGPAV G R Q DR+LY+  +Q E+  +  NLD++ 
Sbjct: 87  DALDGICGRMCDLSGIQYKVLNKRKGPAVWGYRAQIDRDLYKKHIQTELFENTPNLDILV 146

Query: 122 GEVAGFNTEKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E    +S          I++ D + I   +V++TTGTFL G I+IG    PA
Sbjct: 147 ASVEDLIVENPTTNSNKQTVIDCHGIILSDGTKIHAKSVIITTGTFLNGQINIGTKIYPA 206

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+GD PS  L  +        GRLKTGTP RL+  TI +   + Q  D   +PFSFM D
Sbjct: 207 GRIGDQPSIGLAKTLAALSLKMGRLKTGTPPRLNSNTINYKVCDIQKGDNPPLPFSFMND 266

Query: 232 KITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           K+  +   Q+ C +T+T+L+   II  N+  +   + ++   GPRYCPSIE K++RFG R
Sbjct: 267 KVWIKPEDQLVCYLTKTSLDIEPIIRNNLHVNRHVTEEVT--GPRYCPSIESKVLRFGGR 324

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL +D+VYPNG+S  LPEE+Q + I +IPGLEK  I RPGY +EYD+++P
Sbjct: 325 Q-HQVWLEPEGLTSDIVYPNGLSCTLPEELQFELIHSIPGLEKAEITRPGYGVEYDFVDP 383

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-----KSNKLDCICFSR 403
           +EL  TLE K+I  LFLAGQINGTTGYEEAAAQG++AGIN+A      KS     I  SR
Sbjct: 384 RELQTTLELKRIHNLFLAGQINGTTGYEEAAAQGIIAGINAAALVALGKSP----ITVSR 439

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
           T+ YIGV+IDDLT+ G  EPYRMFTSRAE+R++LRPDNAD RLT  G ++GC+ + R  +
Sbjct: 440 TEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLTLRPDNADQRLTAKGYQVGCVNKARYDK 499

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD--FSIQNLFS 520
                ++ N   SLLKS+   ++       ++  ++   ++A+  L   +   +I  L +
Sbjct: 500 MVAMQKKLNDGISLLKSITKPARTWRKLLKMAPSRNMMQKSAFNMLDCYNEGITISMLAT 559

Query: 521 ICPDARKFSS--LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD-YSSLPALS 577
           + P+    +   L+  RL IE++Y A    Q +E +E++ EE  LIPKD D YS    L+
Sbjct: 560 VAPELLPLTHDPLLENRLHIEATYEAAASEQAVEVEEVRKEEALLIPKDLDYYSDTLNLN 619

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +E +EKL  ++P  +  AS+I G++P+++  LL ++KKN
Sbjct: 620 SEEREKLCSIQPQTIAAASRIPGISPSSVFRLLRFVKKN 658


>gi|262402091|ref|ZP_06078655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC586]
 gi|262351737|gb|EEZ00869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC586]
          Length = 631

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 385/622 (61%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLALF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREYHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSI-SFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKF--SSLVIE 534
              +   ++    + +  +   +R A   + L  P+ + + L +  P        S   E
Sbjct: 482 DTWMNPNSVGVEQLNALLKTPMSREACGEDLLRRPEMTYE-LLTTLPAFVPVLEDSEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  
Sbjct: 541 QVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGI 600

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK+
Sbjct: 601 ASRISGITPAAISILLVHLKKH 622


>gi|299065186|emb|CBJ36352.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CMR15]
          Length = 647

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/629 (45%), Positives = 384/629 (61%), Gaps = 15/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL   
Sbjct: 127 DLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGIT 243
             +     GRLKTGTP R+DG+TI +   E Q  D   +P FSF+    +  RQ+ C +T
Sbjct: 187 LKELKLPQGRLKTGTPPRIDGRTIDFSVLEAQPGDLDPVPVFSFLGHADMHPRQVPCWVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+
Sbjct: 247 HTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNG+ST+LP ++Q   I ++ GLE+ +I+RPGYAIEYDY +P+ L  +LE+K I+GL
Sbjct: 307 EFYPNGVSTSLPFDVQLDLIHSMRGLEQAHILRPGYAIEYDYFDPRGLKASLESKAIAGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+  +          R  +Y+GV++DDL ++GV EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAGLQVQGRAAWTPRRDQAYLGVLVDDLITRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  +
Sbjct: 427 YRMFTSRAEFRLSLREDNADMRLTEAGRDLGVVDDARWDAFNRKRDAVSRETERLKSTWV 486

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLF----------SICPDARKFSS 530
               L +     +  K   +  +  + L  P+ + + L           ++  D    + 
Sbjct: 487 NPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYELLMGMQDGKYAPEALLADEPLLAE 546

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP 
Sbjct: 547 QIREQIEIGIKYHGYIARQADEVERLGANENTRLPADFDYKQVRGLSIEVQQKLAQHKPE 606

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 607 TIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|168207743|ref|ZP_02633748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
 gi|170660925|gb|EDT13608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
          Length = 630

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|171060863|ref|YP_001793212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptothrix cholodnii SP-6]
 gi|205831529|sp|B1XYL1|MNMG_LEPCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170778308|gb|ACB36447.1| glucose inhibited division protein A [Leptothrix cholodnii SP-6]
          Length = 685

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/648 (45%), Positives = 390/648 (60%), Gaps = 33/648 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCDTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q +L + Q  
Sbjct: 65  ALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRQRLENQPHLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G    PAGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIRFRARTVVLTAGTFLDGKIHVGLNNYPAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-----------ERLIPFSFMTDK 232
               +     GRLKTGTP R+DG++I + K  +Q  D             +  FSF+   
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSKLIEQPGDGVAAADGTPASSPMPVFSFLGSA 244

Query: 233 ITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
             + RQ+ C IT TN  TH I+      S +++G I+  GPRYCPSIEDKI RF ++N H
Sbjct: 245 AQHPRQMPCWITNTNQRTHDILRTGFDRSPMFTGVIEGVGPRYCPSIEDKINRFADKNSH 304

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T+  YPNGIST+LP +IQ   +RT+ G+E   I+RPGYAIEYDY +P+EL
Sbjct: 305 QIFLEPEGLTTNEYYPNGISTSLPFDIQLAAVRTMLGMENAYILRPGYAIEYDYFDPREL 364

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + E+K I GLF AGQINGTTGYEEAAAQGL AG N+A ++     + F R  +Y+GV+
Sbjct: 365 KTSFESKAIGGLFFAGQINGTTGYEEAAAQGLYAGANAALQAQGNPPLSFGRDQAYLGVL 424

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT IG  +G + + R   F +     
Sbjct: 425 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEIGRSVGLVDDVRWDAFNRKRDAV 484

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDAR- 526
           +     LKS  +    L +   S +  GK         + +  P  S   +      AR 
Sbjct: 485 SRETERLKSTWVHPAILPAAD-SERLFGKALEHEYNLADLMRRPGISYDTVAEALTIARP 543

Query: 527 ---------------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
                            ++ VIE+L+I   YA Y  +Q  + +     E   +P + DY+
Sbjct: 544 GNYVSRETLNSQLGADLAAAVIEQLEIAIKYAGYIDKQNEDVQRAAHYEHLRLPDELDYA 603

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            + ALS E+++KL+  +P  L QAS+I G+TPAAL+LLLI++K+   K
Sbjct: 604 QVTALSFEVRQKLTKHRPETLGQASRISGVTPAALSLLLIHLKRGRFK 651


>gi|328780265|ref|XP_394417.4| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 1 [Apis
           mellifera]
          Length = 659

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/631 (45%), Positives = 405/631 (64%), Gaps = 21/631 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EA A AA++GA T L+THK STIG MSCNP+ GG+GKG+L+REID
Sbjct: 35  HKFDVIIIGGGHAGTEACAAAARMGAKTLLVTHKKSTIGEMSCNPSFGGIGKGNLMREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+  R+ D +GI + +LN  KGPAV G R Q DR+LY+  +Q E+ +   L + +  
Sbjct: 95  ALDGVCCRICDLSGINYTILNRSKGPAVWGYRAQIDRKLYKKHLQEELFNTPGLQICESS 154

Query: 124 VAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V     + +      I++++ + I    VV+TTGTFL+G I+IG  K PAGR+GD PS  
Sbjct: 155 VEDLIIHGDSPKCCGIILKNGTKIYSDAVVITTGTFLKGQINIGLEKRPAGRLGDEPSIG 214

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQI 238
           L N+     F  GRLKTGTP R++  T+ + K + +F D+   PFSFM + +     +Q+
Sbjct: 215 LANTLENIGFRMGRLKTGTPPRIEKSTVDFSKCDIRFPDKVSTPFSFMNETVWLPVEKQL 274

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +  +II +N+  +   + +I   GPRYCPSIE KI++F + + H I+LEPE
Sbjct: 275 NCYLTYTTEKVEKIIKDNMHCNLHITEEI--CGPRYCPSIESKILKF-KGHKHPIWLEPE 331

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++ ++YP G+S  LP E Q + I+ IP LE   +++PGY +EYDYI+P+EL  TLETK
Sbjct: 332 GLDSPLIYPAGLSCTLPAEKQEELIKCIPALENAKMVKPGYGVEYDYIDPRELNVTLETK 391

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           K+ GLFLAGQINGTTGYEEAAAQG+VAG+N+A K    + +  SRT+ YIGV+IDDL ++
Sbjct: 392 KVPGLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVLNKNLLIISRTEGYIGVLIDDLITQ 451

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LRPDNAD RLT  G ++GC+ E R K+    + +      L 
Sbjct: 452 GTNEPYRMFTSRAEYRLVLRPDNADQRLTKKGYEIGCVSEERMKKTETILSKLEESIQLF 511

Query: 479 KSLVLTSKNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKF-----SSL 531
           K+ V +     +    FK    T  ++A++ L     SI  +  + PD  +F      S+
Sbjct: 512 KNEVHSDSKWKNL-FGFKHTKNTNVQSAFDLLRNNMISIDMIIKVLPD--RFGHLAQDSI 568

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA--LSNELKEKLSILKP 589
           ++ER++IE+ YA        E  EI+  E+ +IP   DY ++P   LS E KEK S +KP
Sbjct: 569 ILERIKIEAIYAPSIKGLQEEIDEIRKNEQMIIPSSIDY-NMPQLNLSIEEKEKFSEIKP 627

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           + +  A++I G+TP A+  L+ YI+KN + +
Sbjct: 628 YTIAAATRISGITPCAILRLIHYIRKNELNI 658


>gi|168214842|ref|ZP_02640467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens CPE str. F4969]
 gi|182626428|ref|ZP_02954181.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens D str. JGS1721]
 gi|170713742|gb|EDT25924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens CPE str. F4969]
 gi|177908302|gb|EDT70855.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens D str. JGS1721]
          Length = 630

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|18311636|ref|NP_563570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens str. 13]
 gi|21263661|sp|Q8XH31|MNMG_CLOPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|18146320|dbj|BAB82360.1| glucose-inhibited division protein [Clostridium perfringens str.
           13]
          Length = 630

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFKERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|225620554|ref|YP_002721811.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Brachyspira hyodysenteriae WA1]
 gi|225215373|gb|ACN84107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brachyspira hyodysenteriae WA1]
          Length = 617

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/614 (45%), Positives = 384/614 (62%), Gaps = 7/614 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAA  +A+LG  T +I+    TIG MSCNP+IGG+ KG +V+
Sbjct: 1   MNNNKYDVIVVGAGHAGIEAALSSARLGMKTLIISINLDTIGQMSCNPSIGGVAKGTIVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +Q NL + 
Sbjct: 61  EIDALGGEMGILIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEAAKTLYAQNNLTLH 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N++  I  +      C  V+LTTGTFL G+IHIGK +  AGR+G+ P+ 
Sbjct: 121 QDIVTEIIVENNVLKGIKTERGREYECQAVILTTGTFLNGLIHIGKYQKQAGRIGELPAI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S      + GRLKTGTPAR+D  +I +D  E Q  D+ + PFSF+ +KI   Q  C
Sbjct: 181 GLSDSLRSLGLEVGRLKTGTPARVDYYSINFDILEMQKGDDEITPFSFLDEKIDIVQEPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T+   H+II +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E  
Sbjct: 241 YITYTDANIHKIIQDNIHLSPMYSGVITGIGPRYCPSIEDKVVRFADKPRHQLHLERESY 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY NG S++LPEE+Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI
Sbjct: 301 RTNEVYINGFSSSLPEEVQIKMIRSLKGLEEVRILKPAYAVEYDYVNPIELKPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAA QGL+AGIN++ K  K       R+D YIGV+IDDLT+KG 
Sbjct: 361 EGLFLAGQINGTSGYEEAACQGLMAGINASLKIKKEAPFILKRSDGYIGVLIDDLTTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R ++     Q+   L   L  
Sbjct: 421 KEPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLEKVRDKKQKTQILVEYLNK 480

Query: 481 LVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             LT K   +  + F ++ K   T +    +  P+  I  L  +      ++  V+E  +
Sbjct: 481 RTLTQK--ETEDLGFTKEAKEYRTMSLASIIKRPECGIDMLKHLIDG--DYNKNVLENAE 536

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  R + E ++I+  E  LIP+DFDYS+L ++  +   KL   KP+N+ QA +
Sbjct: 537 IAIKYEGYIARYLNEIRDIEKYENMLIPEDFDYSTLKSVKIDAINKLKQYKPYNISQALR 596

Query: 598 IEGMTPAALNLLLI 611
           I  +  + +++L++
Sbjct: 597 IPEVDKSVVHILIL 610


>gi|312876170|ref|ZP_07736157.1| glucose inhibited division protein A [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796985|gb|EFR13327.1| glucose inhibited division protein A [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 632

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/616 (45%), Positives = 389/616 (63%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 12  YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ QGEV 
Sbjct: 72  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQGEVC 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  +
Sbjct: 132 EIIVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGRVIIGETVYDSGPDGMHPARYLTEN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T 
Sbjct: 192 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIDQVPCYLTY 251

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD 
Sbjct: 252 TTEETHRIIRENLHRAPLFTGLISGIGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTDE 311

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 312 MYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 371

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 372 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEPY 431

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G I    Q+R+ K++Q+   +    + +K+ 
Sbjct: 432 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLIS---QQRYEKFLQKKKMIEDEINRVKNT 488

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+      +  +  K      T     + L  P+ S ++L  I P        V + ++I
Sbjct: 489 VIAPSEKVNKFLQEKGSSPITTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+ + ++ K  E + IP+  DYS +  LS E K+KLS ++P ++ QAS+I
Sbjct: 549 EIKYEGYIKKQLAQIEQFKKLENKKIPEWVDYSQILGLSTEAKQKLSQIRPASIGQASRI 608

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 609 SGVSPADISVLLIWLE 624


>gi|237809878|ref|YP_002894318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Tolumonas auensis DSM 9187]
 gi|259495855|sp|C4LDX1|MNMG_TOLAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|237502139|gb|ACQ94732.1| glucose inhibited division protein A [Tolumonas auensis DSM 9187]
          Length = 629

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/623 (44%), Positives = 396/623 (63%), Gaps = 19/623 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   QFDVIVVGGGHAGTEAATAAARMGMKTLLLTHNIETLGHMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M +  D AGIQFR+LN  KGPAVR  R QADR LY+  ++  + +  NL + Q   
Sbjct: 66  MGGIMAQAIDHAGIQFRILNSSKGPAVRATRAQADRLLYKQTIRHTLENYPNLQLFQQAC 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +V Q    I   TVVLT GTFL G+IHIG      GR GD  S +L  
Sbjct: 126 DDLILEGDRVCGVVTQAGIRILSKTVVLTAGTFLNGLIHIGMEHYRGGRSGDPASVTLAE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +     GRLKTGTP R+D +++ + + + Q  D+ +  FS++     + RQ+ C IT
Sbjct: 186 RMREMPLRVGRLKTGTPPRIDARSVDFSQLQMQLGDDPVPVFSYLGKPEQHPRQVPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN++TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQIF+EPEGL T 
Sbjct: 246 HTNVQTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKIMRFADKDAHQIFIEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G    +I RPGYAIEYD+ +P++L P +E K +  L
Sbjct: 306 ELYPNGISTSLPFDVQVQIVRSMKGFANAHIARPGYAIEYDFFDPRDLKPNMENKCLQNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+A ++   D     R  +YIGV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGMLAGINAALRAQDKDPWAPRRDQAYIGVLMDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTP+G +LG + + R   F   ++     +  L+   +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPVGRELGLVNDERWAFFNHKLEMMAQEQQRLQDTWI 485

Query: 484 TSKNLSSTSIS-FKQDGKTRTAY--EFLSYPDFSIQNLFSI--------CPDARKFSSLV 532
             ++ ++  ++   +   +R A   + L  P+ + Q+L +I         P A       
Sbjct: 486 QPQHPATEGLNKILKTPLSRPASLEDLLRRPEVNYQDLMAIEGVGPGIEHPQAS------ 539

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E  +    E+ L+P D DYS +P LS E+  KL+  KP  +
Sbjct: 540 -EQIEIQVKYAGYIDRQQDEIDKQLRHEETLLPLDLDYSEVPGLSKEVCIKLNDTKPQTI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G+TPAA+++LL+++KK
Sbjct: 599 GQASRISGVTPAAISILLVHLKK 621


>gi|110802913|ref|YP_699903.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens SM101]
 gi|123145822|sp|Q0SPQ4|MNMG_CLOPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110683414|gb|ABG86784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens SM101]
          Length = 630

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARVNKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|218962059|ref|YP_001741834.1| glucose-inhibited division protein A [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730716|emb|CAO81628.1| glucose-inhibited division protein A [Candidatus Cloacamonas
           acidaminovorans]
          Length = 615

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/625 (45%), Positives = 385/625 (61%), Gaps = 24/625 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +D+IV+G GH+G EA+  AAK G   AL T K   IG MSCNP+IGG  KGHL REI
Sbjct: 4   DNKFDLIVVGAGHSGIEASLAAAKRGLKVALFTIKIEAIGRMSCNPSIGGPAKGHLAREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G + + AD +GI FR+LN  KGPAV  PR+Q DR+ Y L M+  +  QEN+ +I+ 
Sbjct: 64  DALGGELAKSADLSGIHFRMLNRSKGPAVWAPRSQNDRQKYHLLMREAVEKQENIHLIEA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            +     E   +  ++ Q         ++L TGTFL+G IHIGK+    GR G+     L
Sbjct: 124 TIEEIIVENGCVKGVISQIGHCYYAPKIILATGTFLQGKIHIGKISYAGGRSGEPSVEYL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S   +     R KTGTP R+D +++ ++K E+Q  DE    FSF  D      + C I
Sbjct: 184 SRSLSAWGLKVRRFKTGTPPRVDLRSVNYNKLEEQKGDENPQGFSFYRDIEIKNLVSCYI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETH+II  N+  SA+YSG IK  GPRYCPSIEDKIV+F +R  H IF+EPEGLNT
Sbjct: 244 THTTEETHQIIRANLTESALYSGIIKGIGPRYCPSIEDKIVKFPQRESHHIFIEPEGLNT 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NGIST+LP EIQ + + +IPGLE+  I+R  YAIEYD+I+P+E+  +L+ KKI G
Sbjct: 304 FEGYVNGISTSLPAEIQEKIVHSIPGLEEARILRYAYAIEYDFIDPEEIDSSLQCKKIKG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL+AGIN++      + +   R+++YIGV+IDDL ++G  E
Sbjct: 364 LYLAGQINGTSGYEEAAAQGLLAGINASLALENKEPLILKRSEAYIGVLIDDLVTRGTNE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYRMFTSRAEYR+ LR DNAD RL P+G KLG + E R +RF   +Q    LR  LK L 
Sbjct: 424 PYRMFTSRAEYRLLLRQDNADERLMPVGYKLGLVEESRWQRF---LQMQEILRRELKYLK 480

Query: 482 ---VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL----FSICPDARKFSSLVIE 534
               L +  +    I F Q          L  P+ S  +L    + I  D    +S +  
Sbjct: 481 QHNCLPNGEIKEP-IRFAQ---------LLKRPEISFNDLQNYGYKIPADV---NSDIQN 527

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           RL++E  Y+ Y  R   E ++ +  E   IP++ DY S+P+L+ E +EKLS ++P N+ Q
Sbjct: 528 RLELEIKYSGYLNRMEEEIQKFQNAETIAIPEEMDYFSIPSLAYEAREKLSKIRPKNIGQ 587

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           A +I G+  +    L+I+++KN  K
Sbjct: 588 AMRIPGINYSDSVALMIWLRKNAKK 612


>gi|326202765|ref|ZP_08192632.1| glucose inhibited division protein A [Clostridium papyrosolvens DSM
           2782]
 gi|325986842|gb|EGD47671.1| glucose inhibited division protein A [Clostridium papyrosolvens DSM
           2782]
          Length = 627

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/618 (45%), Positives = 398/618 (64%), Gaps = 10/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+ VIG GHAGCEAA  AA+LG ST + +    +I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   SYDIAVIGAGHAGCEAALAAARLGCSTIVFSINLDSIANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  + +QENLD+ Q EV
Sbjct: 67  LGGQMGKTTDKTFIQSKILNSSKGPAVYSLRAQVDRRQYQMEMKHILETQENLDIRQAEV 126

Query: 125 AGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               T++    ++ +     ++ +C  +VLTTGT+L+G I IG +    G  G  P+N L
Sbjct: 127 IEVLTDETGTSVTGVKTHTGAIFQCKAIVLTTGTYLQGKIFIGDVNYSGGPDGLFPANRL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S      +  R KTGTPARL+ +++ + K  +Q  D+ ++PFSF T+KI   Q+ C +
Sbjct: 187 SESLQNIGIELLRFKTGTPARLNKRSLDFSKMSEQPGDDVIVPFSFETEKIEKDQVPCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I +NI  S +YSG+I   GPRYCPSIEDK+VRF ++  HQ+F+EP G+ T
Sbjct: 247 TYTNADTHEVIKKNIHRSPLYSGNITGIGPRYCPSIEDKVVRFSDKEHHQVFVEPMGIGT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q +F+RTIPGLE V ++R  YAIEYD I+  +L  +LE KKI G
Sbjct: 307 EEMYLQGMSSSLPEDVQVEFMRTIPGLENVKVMRSAYAIEYDGIDATQLKLSLEYKKIEG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQING++GYEEAAAQG+VAGIN+A K    + +   R+ +YIGV+IDDL +KG  E
Sbjct: 367 LFSAGQINGSSGYEEAAAQGIVAGINAAMKIQNREPLILDRSQAYIGVLIDDLVTKGTKE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT +G ++G I E R ++F K  +        LK+  
Sbjct: 427 PYRMMTSRAEYRLLLRQDNADLRLTSLGREIGLISEERYEKFLKKKELIEKEIERLKNTY 486

Query: 483 LTS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L       K L S + +  + G   T  E L  P+ S ++L  +C +  +    V E+++
Sbjct: 487 LPPSEAVLKYLESRNSTAIKSGIQVT--ELLRRPEISYESLSQVC-ELPELPRAVREQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +   Y  Y  RQM + ++ K  E R IP+  DY+ +  L  E ++KLS ++P ++ QAS+
Sbjct: 544 VAVKYEGYIKRQMQQVEQYKKLEGRKIPQPIDYNEIQGLRLEARQKLSQIRPDSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLIY+++
Sbjct: 604 ITGVSPADISVLLIYLEQ 621


>gi|303256377|ref|ZP_07342391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderiales bacterium 1_1_47]
 gi|302859868|gb|EFL82945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderiales bacterium 1_1_47]
          Length = 649

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/623 (46%), Positives = 385/623 (61%), Gaps = 14/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+GGG+AG EAAA  A++ A T L+TH    +G  SCNP+IGG+GK HLV+E+DAL
Sbjct: 22  YEVIVVGGGNAGIEAAAACARMKAKTLLVTHNLDNLGQQSCNPSIGGIGKSHLVKEVDAL 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL+ +  D +GIQFRVLN  KG AVR  R Q DR LY+  M+  I + ENL +I+  V 
Sbjct: 82  DGLIAKATDFSGIQFRVLNASKGAAVRATRAQIDRRLYKYQMRTRIEAIENLSLIEEAVD 141

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ + ++    I+   VVL  GTFL G + IG+    AGR GD  S +L  +
Sbjct: 142 ALLLENGKVAGVYLRSGISIKAKAVVLCAGTFLNGKVFIGQTSYLAGRSGDPSSVNLGIN 201

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +      RLKTGTPARLDG+TI + K E+Q  D   +P FS+M + +   +Q+ C IT
Sbjct: 202 LAELGLPKARLKTGTPARLDGRTIDFSKCERQLGDSEPVPVFSYMGSPEDHPQQVPCWIT 261

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH  I + +  S +++G I+  GPRYCPSIEDKI +F  +N H +FLEPEGLNT 
Sbjct: 262 DTNQTTHDFIRKGLDRSPLFTGVIEGIGPRYCPSIEDKIHKFASKNSHHVFLEPEGLNTY 321

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q  FI +I GLE V+IIRPGYAIEYDY +P  L   LE+K+   L
Sbjct: 322 EYYPNGISTSLPYDVQVNFIHSIKGLENVHIIRPGYAIEYDYYDPTHLKDNLESKEFDNL 381

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQ+NGTTGYEEAAAQGL+AGIN+  K    +     R  +Y+GVM++DL +KGV EP
Sbjct: 382 FLAGQVNGTTGYEEAAAQGLMAGINAVLKIRDEEPFLLRRDQAYLGVMVNDLITKGVNEP 441

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG KLG + E R K F +  +        LKS+ +
Sbjct: 442 YRMFTSRAEYRLSLREDNADERLTEIGYKLGVVSEERWKFFQEKRERLARETERLKSIWV 501

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNL--------FSICPDARKFSSLV 532
               L   S+      +  K    Y  L  P+   Q L         S+ P     S   
Sbjct: 502 NPGVLDKFSLEEVVGAELSKESQLYVMLKRPEVDYQKLKLLKTKDGESLLPPPY-LSDED 560

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E L  +  Y+ Y  +Q  E ++   + + +IP+DFDY S   LS E+ +KL  +KP  L
Sbjct: 561 AETLTTKVKYSGYEDKQKAEVQKNLEKIETVIPEDFDYDSAKGLSFEITQKLKKIKPRTL 620

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            +A  I G+TPAA+++LL+Y+K+
Sbjct: 621 GEALNISGVTPAAISILLVYLKR 643


>gi|168218050|ref|ZP_02643675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens NCTC 8239]
 gi|182379932|gb|EDT77411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens NCTC 8239]
          Length = 630

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGYNVGLVTEERWNKFQERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|110801428|ref|YP_697345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens ATCC 13124]
 gi|168211558|ref|ZP_02637183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens B str. ATCC 3626]
 gi|169343452|ref|ZP_02864452.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens C str. JGS1495]
 gi|123148451|sp|Q0TLZ5|MNMG_CLOP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110676075|gb|ABG85062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens ATCC 13124]
 gi|169298404|gb|EDS80493.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens C str. JGS1495]
 gi|170710449|gb|EDT22631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens B str. ATCC 3626]
          Length = 630

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 390/615 (63%), Gaps = 7/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLV 482
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q  N  R L  LK L 
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWSKFQERKQ--NLERELERLKELQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N     +   +  K    YE +  P+    +L  + P+       + +++ I 
Sbjct: 485 ITNKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I 
Sbjct: 545 ARYEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRIS 604

Query: 600 GMTPAALNLLLIYIK 614
           G++PA +++LLI+++
Sbjct: 605 GVSPADISVLLIFLE 619


>gi|288817518|ref|YP_003431865.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
 gi|288786917|dbj|BAI68664.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
 gi|308751121|gb|ADO44604.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
          Length = 614

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/622 (47%), Positives = 394/622 (63%), Gaps = 17/622 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV+VIGGGHAG EAA  +A++GA T +      TIG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVDEFDVVVIGGGHAGIEAALASARMGAKTVMFVLNADTIGQMSCNPAIGGIAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D+ GIQF++LN +KG AV  PR QAD++LYR  M++    QENL + 
Sbjct: 61  EIDALGGEMGKAIDSTGIQFKMLNTRKGKAVWSPRAQADKKLYREYMKKVCERQENLYIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     + N + ++  +     +  TVV+TTGTFL G I+IG    PAGR  +  S 
Sbjct: 121 QDEVVDIIVKDNRVVAVKTKLGLEYKTKTVVVTTGTFLNGTIYIGDKTFPAGRAWEPRSE 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----- 235
            L   + +  F   R KTGTPARLDG+TI +   E    D+    FSF T+ +       
Sbjct: 181 GLAEFYKRHGFPLMRFKTGTPARLDGRTIDYSGLEIAPGDDPPPKFSFWTEPVGTYWFPK 240

Query: 236 --RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              QI C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F +++ HQ+
Sbjct: 241 GKEQINCYITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFPDKDRHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL+T  VYPNG+ST+LPEEIQ +  R+IPGLE V +IRP YAIEYD + P EL+P
Sbjct: 301 FLEPEGLDTIEVYPNGLSTSLPEEIQWELYRSIPGLENVELIRPAYAIEYDVVPPTELYP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIG+MID
Sbjct: 361 TLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGIMID 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLT+KGVLEPYR+FTSR+EYR+ LR DNA  RL+ +G +LG + + + K   +  ++   
Sbjct: 421 DLTTKGVLEPYRLFTSRSEYRLHLRQDNAILRLSKLGYELGLLTQDQYKIIKELQRQIEE 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             S  KS          T+++   + K+ T  + L+  DF++ +L +   D       V 
Sbjct: 481 WMSFYKS--------QRTALAIGSEVKSYTPSQLLT-SDFTLDDLKTFGFDVPT-HPFVK 530

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++IE  Y  Y  R++   + +K  E   IP+D DY  +  +S E KEKL   +P  + 
Sbjct: 531 EVVEIELKYEPYMERELKINERLKKLEDVKIPEDLDYDKIQGISKEAKEKLKRFRPITVG 590

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I+G+TPA +  LL Y+ K
Sbjct: 591 QASRIDGITPATITSLLAYLGK 612


>gi|315644289|ref|ZP_07897459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus vortex V453]
 gi|315280664|gb|EFU43953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus vortex V453]
          Length = 628

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/617 (44%), Positives = 391/617 (63%), Gaps = 12/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKETMEKEEKLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   I+ Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  L +
Sbjct: 127 DQLIVEDGVCVGILTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVKLAH 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C +T 
Sbjct: 187 NLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDKPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSVDTHQIINDNLHRAPMFSGIIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKNTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ GLF
Sbjct: 307 YYVQGLSTSLPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQDKEPVVLDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--- 481
           R+ TSRAEYR+ LR DNAD RLT IG  +G I E   +R+AK++Q+   +   ++ L   
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISE---ERYAKFLQKKQLVEQEIERLRQA 483

Query: 482 ----VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
               V  +  L +   +   DG        L  P+ S   + S+ P        + E+++
Sbjct: 484 KVKPVEVNATLEAAGSAPIVDGSNLLT--ILRRPEVSFAMIESLSPSPYDLDEDMKEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+
Sbjct: 542 IQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDDINGLAMEARQKLNKIRPISIGQASR 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA +++LL+Y++
Sbjct: 602 IAGVTPADISILLVYLE 618


>gi|222152197|ref|YP_002561357.1| glucose-inhibited division protein A [Macrococcus caseolyticus
           JCSC5402]
 gi|259495848|sp|B9E8Z3|MNMG_MACCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|222121326|dbj|BAH18661.1| glucose-inhibited division protein A [Macrococcus caseolyticus
           JCSC5402]
          Length = 624

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 282/623 (45%), Positives = 391/623 (62%), Gaps = 7/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAG EA   +A+ GA T ++T    ++  M CNP++GG  KG +VRE
Sbjct: 1   MEQKYDVIVVGAGHAGVEAGLASARKGAKTLMLTINLDSVAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I +Q+NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKSVIEAQDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   +  +     +      VVLTTGTFLRG I +G +K  +G     PS  
Sbjct: 121 GMVERLIIEDGKVLGVETVIGTTYLADAVVLTTGTFLRGEIILGNIKYSSGPNHQMPSIK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADHLREIGFDIVRFKTGTPPRVNSDSIDYSKTEIQPGDDLPRAFSYETTEFIMDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQIFLEPEG N
Sbjct: 241 LTYTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQIFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G+ST+LPE +Q Q ++TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TKEVYVQGLSTSLPEHVQLQMLKTIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIQ 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAA QGL+AGIN+A K    D +   R ++YIGV+IDDL +KG  
Sbjct: 361 GLYTAGQINGTSGYEEAAGQGLMAGINAAAKVLGHDELILGRHEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL 477
           EPYR+ TSRAE+R+ LR DNAD RLT IG   G I E R  RF    A   +E N L  +
Sbjct: 421 EPYRLLTSRAEHRLLLRHDNADLRLTEIGYNAGLIDEFRYSRFNNKKAAISEEINRLSQI 480

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +K    T   + S   +  +DG    A + L  P+    ++ ++  +       V E++
Sbjct: 481 RIKPNEKTQSMIESRGGTPLKDGI--LAIDLLRRPEMDYASVVALIEEQGMIDESVQEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E + IP++ DY  + +L+ E +EKL  +KP ++ QAS
Sbjct: 539 EIQTKYEGYIQKSLQQVEKVKRMENKKIPENIDYDDIHSLATEAREKLKEVKPLSIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +++LLIYI++  +K
Sbjct: 599 RISGVNPADISILLIYIEQGKIK 621


>gi|56965873|ref|YP_177607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus clausii KSM-K16]
 gi|81170520|sp|Q5WAG4|MNMG_BACSK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56912119|dbj|BAD66647.1| glucose inhibited division protein A [Bacillus clausii KSM-K16]
          Length = 629

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/620 (44%), Positives = 390/620 (62%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   TFDVIVIGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+R I  QENL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFRYQQEMKRTIEEQENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R   VV+TTGT+LRG I +G+L   +G     PS  L +
Sbjct: 127 DRLIIEDGECRGVITNTGAQYRAKAVVVTTGTYLRGKIILGELSYESGPNNMQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+ G TI + KTE Q  D++   FS+ T K    Q+ C +T 
Sbjct: 187 HLKELGFDLVRFKTGTPPRVHGNTIDYKKTEIQPGDDKPRAFSYETTKFITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH+II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 247 TSENTHQIISANLGRSPMYSGMIEGTGPRYCPSIEDKIVRFSDKPRHQIFLEPEGRDTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   ++TIPGLE+V ++RPGYAIEYD I P +L+PTLETKKISGLF
Sbjct: 307 VYVQGLSTSLPEDVQLSMLKTIPGLEEVRMMRPGYAIEYDAIVPTQLWPTLETKKISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A+K+   + +   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAQKAFGKEGVILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT  G +LG I E R  RF    +     +  + +LV+ 
Sbjct: 427 RLLTSRAEFRLILRHDNADLRLTEKGYELGLISEERYSRFKAKQEAIEQEKQRISALVVK 486

Query: 485 SKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER 535
             +        L S S++     +   A   L  P+ +  +   I P    +    V E+
Sbjct: 487 PSDEVNQLLERLGSRSMT-----EALKATAVLKRPEMTYDHFLKIIPRPDVELDDEVYEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  +Q  + + +K  E++ IP+D DY ++  ++ E ++KL  ++P ++ QA
Sbjct: 542 VEIQVKYEGYIEKQWQQIERLKKMEQKRIPEDLDYDAIQGIATEARQKLKQVRPLSVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S++ G+ PA +++LL+Y+++
Sbjct: 602 SRVSGVNPADISILLVYLEQ 621


>gi|313111484|ref|ZP_07797285.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 39016]
 gi|310883787|gb|EFQ42381.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 39016]
          Length = 603

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/593 (46%), Positives = 365/593 (61%), Gaps = 5/593 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL G M    D  GIQFR+LN +
Sbjct: 1   MGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDALGGAMAEATDKGGIQFRILNSR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q        E++ +  +V Q      
Sbjct: 61  KGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACDDLIVEQDQVRGVVTQMGLRFH 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLTTGTFL G+IHIG      GR GD PS +L     +     GRLKTGTP R+DG
Sbjct: 121 ADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARRLRELPLRVGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +    +Q  D  +   SF+  K  +  Q+ C IT TN  TH II  N+  S +YSG
Sbjct: 181 RSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITHTNARTHEIIAANLDRSPMYSG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  +YPNGIST+LP ++Q Q +R+
Sbjct: 241 VIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHELYPNGISTSLPFDVQLQIVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF AGQINGTTGYEEA AQGL+A
Sbjct: 301 IRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLFFAGQINGTTGYEEAGAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G N+A +S   D  C  R ++YIGV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPYRMFTSRAEYRLILREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LT  G +LG + +RR   F    +        LKS  +        +I+ +        Y
Sbjct: 421 LTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVRPNTPQGDAIAERFGTPLTHEY 480

Query: 506 ---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
                LS P+     L  I  DA   +  V E+++I + YA Y  RQ  E   ++  E  
Sbjct: 481 NLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTKYAGYIDRQQEEIARLRASEDT 539

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            +P D DY  +  LS E++ KL+  +P  L QAS+I G+TPAA++LLLI++KK
Sbjct: 540 RLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGVTPAAISLLLIHLKK 592


>gi|253573864|ref|ZP_04851206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846341|gb|EES74347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/614 (44%), Positives = 390/614 (63%), Gaps = 6/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +Y+VIV+G GHAGCEAA  AA++G  T ++T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   NYEVIVVGAGHAGCEAALAAARMGCRTLMVTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+ AM+  +  + NL ++QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFLYQHAMKETLEKEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L  
Sbjct: 127 EELIVEDGQCVGVITKTGAEYRAKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSVRLAQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  R KTGTP R+   +I + +TE Q  DE+   FS+ T    N Q+ C +T 
Sbjct: 187 NLKELGFELVRFKTGTPPRVHKDSIDFSQTEIQPGDEKPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHKIITDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFSDKPKHQIFLEPEGKNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++PEE+Q Q +R++PGL+ V ++R GYAIEYD + P +L+P+LETK++ GLF
Sbjct: 307 YYVQGFSTSMPEEVQLQMLRSVPGLQNVQMMRTGYAIEYDAVVPTQLWPSLETKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + I   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPIVLDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKS 480
           R+ TSRAEYR+ LR DNAD RLTP+G ++G I E R  RF     K  QE   L++    
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTPLGYEIGLISEERYARFLDKKQKVEQEIERLKTTKIR 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +  L S   +  QDG        L  P+ +  ++ SI P   +    + E+++I+ 
Sbjct: 487 PTEINPLLESIGSAPIQDGSNLLT--ILRRPEVTYAHIASISPSEVELDEEMQEQVEIQI 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  +Q+I  + ++  EK+ IP++ +Y  +  L+ E ++KLS ++P ++ QAS+I G
Sbjct: 545 KYAGYIEKQLIHVERLQKMEKKKIPENINYDDIQGLAIEARQKLSKIRPISIGQASRISG 604

Query: 601 MTPAALNLLLIYIK 614
           +TPA +++LL+Y++
Sbjct: 605 VTPADISILLVYLE 618


>gi|308388412|gb|ADO30732.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha710]
          Length = 642

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 394/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 376 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 555

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + Q
Sbjct: 556 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQ 615

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 616 ASRISGVTPAAVALLMVHLKR 636


>gi|254478035|ref|ZP_05091419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
 gi|214036039|gb|EEB76729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
          Length = 633

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/625 (44%), Positives = 396/625 (63%), Gaps = 11/625 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG ST         I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVCVVGLGHAGSEAALASARLGLSTVGFATNLDAIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+ 
Sbjct: 68  GGQMAINTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQMNMKHTLERQENLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N ++ +V +  ++ +C   ++TTGTFL+G + IG++   +G  G  P++ L  +
Sbjct: 128 DILVKDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGEVDFESGPSGLFPASELSEA 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTP R+D ++I + K E Q  DE + PFSFM DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPPRVDKRSIDFSKMEIQPGDEVITPFSFMHDKIEIEQMPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II +NI  + +++G I   G RYCPSIEDK+V+F  R  HQIF+EPEG +T  +
Sbjct: 248 NEKTHKIIRDNIHRAPLFTGAITGVGVRYCPSIEDKVVKFPHRERHQIFIEPEGRDTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+K I GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKWIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKILNKPPVVLDRSQAYIGILIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT IG ++G + E R ++F  K IQ    +R L   +V  
Sbjct: 428 MLTSRAEYRLLLRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMRRLSTVMVRP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
           ++ +++  IS    G T        Y  L  P+   ++   + PD        V E++ I
Sbjct: 488 TEEVNNFLIS---RGSTPLVSGVDLYTLLKRPEVDYKSTKFLDPDRPDDILDSVAEQIDI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS+I
Sbjct: 545 NIKYEGYILKQLRQVEQFKAMENKKIPEDIDYYQISGLSNEAKEKLSKIRPTSVGQASRI 604

Query: 599 EGMTPAALNLLLIYIKK-NTVKLNE 622
            G++PA +++LLIY+++   +K NE
Sbjct: 605 SGVSPADISVLLIYLQQMKKMKSNE 629


>gi|15616631|ref|NP_239843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11132238|sp|P57117|MNMG_BUCAI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25300002|pir||A84930 glucose inhibited division protein A [imported] - Buchnera sp.
           (strain APS)
 gi|10038694|dbj|BAB12729.1| glucose inhibited division protein A [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 628

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/622 (46%), Positives = 395/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV+EID
Sbjct: 5   RNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +++ E
Sbjct: 65  ALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLILEAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +  L 
Sbjct: 125 VKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSAIDLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   + +QI C +
Sbjct: 185 VRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQIPCYL 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPEGL++
Sbjct: 245 THTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPEGLSS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K I G
Sbjct: 305 IKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESKLIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++G  E
Sbjct: 365 LFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLL 478
           PYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +     E N L+   
Sbjct: 425 PYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRLKKNK 484

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
            S +    ++     +     K  +  E L  P    Q+L S+         L  I +++
Sbjct: 485 ISPISPDADILKKLYNINLI-KEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIGQIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  YA Y  RQ  E +     E   +   +DY+ +  LS+E+ +KL+  KP ++ QAS+
Sbjct: 544 NEIKYAGYIKRQSEEIERHLKNENTFLSSIYDYNKIRGLSSEVVKKLNDYKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TPAA+++LLI++KK + K
Sbjct: 604 ISGITPAAISILLIHLKKESYK 625


>gi|254520703|ref|ZP_05132759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. 7_2_43FAA]
 gi|226914452|gb|EEH99653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. 7_2_43FAA]
          Length = 632

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/612 (44%), Positives = 393/612 (64%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  AA++G  T + T    ++  M CNP IGG  KGHLVREIDAL
Sbjct: 16  YDVVVVGAGHAGCEAALAAARMGLKTLICTTNLDSVAMMPCNPNIGGTAKGHLVREIDAL 75

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+  + +QENL + Q EV 
Sbjct: 76  GGEMGVNIDNTFIQSRMLNTSKGPAVHSLRAQADKKKYQNRMKNVLENQENLSLRQLEVI 135

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  ++ ++     C  ++LTTGT+LR  I IG +   +G  G + +N L  S
Sbjct: 136 EVDVEDGKVKGVLTKNGGYFSCKAIILTTGTYLRARIIIGDVTYNSGPNGLAAANELSQS 195

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ +++ + K  +Q  DE+++PFSFM+D I+  Q+ C +T T
Sbjct: 196 LIDLGISLRRFKTGTPARINKRSVDFSKMVEQPGDEKIVPFSFMSDDISREQVSCWLTYT 255

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI+ S +Y+G I+  GPRYCPSIEDK++RF +R  HQ+F+EPEG +T  +
Sbjct: 256 SGETHKIIQENIERSPMYNGLIEGVGPRYCPSIEDKVMRFPDRERHQLFIEPEGEDTQEM 315

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q Q +RT+PGLE V I+R  YAIEYD I+P +L PTLE K   GL+ 
Sbjct: 316 YIGGMSSSLPEDVQLQMLRTVPGLENVEIMRTAYAIEYDSIDPTQLKPTLEFKNFDGLYG 375

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEAAAQG+VAGIN++ K    + +  +R+D Y+GV+IDDL +KG  EPYR
Sbjct: 376 AGQLNGSSGYEEAAAQGIVAGINASLKIKDKEPMILTRSDGYMGVLIDDLVTKGTNEPYR 435

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT IG K+G   E R +RF             LK L +T+
Sbjct: 436 MMTSRAEYRLLLRQDNADFRLTEIGYKVGLATEERYQRFLTRKNNIENEAKRLKELQITN 495

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           K  ++    S+   +  K  + YE +  P+    +L S+  D   +   + E++   + Y
Sbjct: 496 KKETNEFLVSMGSTELKKPISFYELIKRPELDYFSLESLDIDRPDYEDDIGEQINTIAKY 555

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q+ + ++ K  EK+LIP+D +Y+ +  L  E  +KLS ++P ++ QAS+I G++
Sbjct: 556 EGYIDSQLDQVRQFKKFEKKLIPEDLEYADVKGLRTEAIQKLSNIRPVSIGQASRISGVS 615

Query: 603 PAALNLLLIYIK 614
           PA +++LLIY++
Sbjct: 616 PADISVLLIYLE 627


>gi|83815019|ref|YP_444213.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salinibacter ruber DSM 13855]
 gi|123529872|sp|Q2S6G8|MNMG_SALRD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83756413|gb|ABC44526.1| glucose-inhibited division protein A [Salinibacter ruber DSM 13855]
          Length = 664

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/629 (44%), Positives = 395/629 (62%), Gaps = 18/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGH+G EAAA AA +GA T LIT K + IG MSCNPAIGG+GKGH+ REIDAL
Sbjct: 8   HDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHIAREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG+  D AGIQFR+LN  KGPAV GPR Q  R  Y  A+++E+ + +NL +    V 
Sbjct: 68  GGIMGKATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLKMRSDMVK 127

Query: 126 GFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              T+     ++ +        R   VVLTTGTF  GVIH+G+     GR+G+S S+ + 
Sbjct: 128 EILTDDAGETVTGVRTNLGKEFRAPCVVLTTGTFSNGVIHVGEQNFGGGRIGESASHGIT 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECG 241
                  F++GRLKTGTP R+DG++I +   EKQ  D     FSF+TD +     Q+ C 
Sbjct: 188 GCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSVEAQLSCW 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH ++      S +++G + + GPRYCPSIEDKI RF E++ HQ+F+EPEG +
Sbjct: 248 LTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLFIEPEGRD 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NG S++LPEE+Q + +RT+PG+E+ ++ RPGYAIEYD+  P ++  +LETK + 
Sbjct: 308 THEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYSLETKYVD 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+ +K  + D I   R+++YIGV+IDDL +KG  
Sbjct: 368 GLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDDLVAKGTD 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+RI LR DNAD RLT +G KLG   + R  R  +  +  +  R  L   
Sbjct: 428 EPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVTRETLSDT 487

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER---- 535
            ++ + +     S+      + R   E    P+   ++L      A  +  +V E     
Sbjct: 488 TVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLR---HAGLYDEVVTEAPGML 544

Query: 536 -----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
                ++I+  Y  Y  RQ    +E++ +E+  IP DFDY +L  +S E ++KLS ++P 
Sbjct: 545 SAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQKLSKVEPD 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           NL QAS++ G+  + +++L++ +K   V+
Sbjct: 605 NLGQASRVPGVRASDISVLMVLLKNEGVE 633


>gi|312794738|ref|YP_004027661.1| glucose inhibited division protein a [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181878|gb|ADQ42048.1| glucose inhibited division protein A [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 639

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/616 (45%), Positives = 389/616 (63%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV VIG GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 19  YDVAVIGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 78

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ QGEV 
Sbjct: 79  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQGEVC 138

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  +
Sbjct: 139 EIIVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGETVYDSGPDGMHPARYLTEN 198

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T 
Sbjct: 199 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIVQVPCYLTY 258

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD 
Sbjct: 259 TTEETHRIIRENLHRAPLFTGLISGIGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTDE 318

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 319 MYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 378

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 379 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEPY 438

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G I    Q+R+ K++Q+   +    + +K+ 
Sbjct: 439 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLIS---QQRYEKFLQKKKMIEDEINRVKNT 495

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+      +  +  K      T     + L  P+ S ++L  I P        V + ++I
Sbjct: 496 VIAPSEKVNKFLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEI 555

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+ + ++ K  E + IP+  DYS +  LS E ++KLS ++P ++ QAS+I
Sbjct: 556 EIKYEGYIKKQLAQIEQFKKLENKKIPEWVDYSQILGLSTEARQKLSQIRPASIGQASRI 615

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 616 SGVSPADISVLLIWLE 631


>gi|260940192|ref|XP_002614396.1| hypothetical protein CLUG_05882 [Clavispora lusitaniae ATCC 42720]
 gi|238852290|gb|EEQ41754.1| hypothetical protein CLUG_05882 [Clavispora lusitaniae ATCC 42720]
          Length = 677

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/635 (42%), Positives = 405/635 (63%), Gaps = 20/635 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIV+GGGHAGCEAA  +A+ GA+T L+T   + IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 29  HGVIVVGGGHAGCEAATASARAGAATTLVTPHVNKIGTASCNPSMGGVGKGTLLREVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  RV D AGI F+ LN  KG AV+GPR Q DR++Y   MQR I+S  NL V++  V 
Sbjct: 89  DGVAPRVTDKAGIHFKTLNASKGAAVQGPRAQIDRDIYLREMQRTIMSYPNLQVLEASVE 148

Query: 126 GF---NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   K  +  +V+ D S++RC+ VVLTTGTFL G IHIG    P+GR+G++ +  L
Sbjct: 149 DVVIAEGPKPEVRGVVLGDGSVLRCNQVVLTTGTFLGGEIHIGMTAYPSGRIGEAATTGL 208

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  +  F  GRLKTGTP RL  KTI +     Q +D    P S++ +++   +R +EC
Sbjct: 209 SRTLKQAGFRLGRLKTGTPPRLSSKTIDYRGLAPQPSDMPPQPMSYLNERVELEDRLVEC 268

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T T  + H+++ +N+  S      +K  GPRYCPSIE K++RF +++ H ++LEPEGL
Sbjct: 269 HQTATTPQFHQLVRDNLHQSIHIRETVK--GPRYCPSIESKVIRFPQKDMHVVWLEPEGL 326

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D+VYPNGIS  +PE IQ Q +R +PG E V +++PGY +EYDY++P+EL  TLETK++
Sbjct: 327 DCDIVYPNGISCTMPENIQEQLVRMMPGCENVVMLQPGYGVEYDYVDPRELHRTLETKRV 386

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLFLAGQINGTTGYEEAAAQG +AGIN+   +     +   R+D+YIGV++DDL +KGV
Sbjct: 387 AGLFLAGQINGTTGYEEAAAQGCLAGINAGLANVGRSPLVLRRSDAYIGVLVDDLITKGV 446

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSR+E+R S+R DNAD RLT +G + G + E+R + FAK   ++  ++S LKS
Sbjct: 447 EEPYRMFTSRSEFRFSIRADNADKRLTEMGYRAGVVSEQRYRHFAKQHDQFQAVKSHLKS 506

Query: 481 LVLTSKNLSSTSISFKQDGKTRT--AYEFLSYPDFSIQNLF--------SICPDA-RKFS 529
           + ++    +       +         ++ LSY D  + +L         +  PD  ++ S
Sbjct: 507 ISMSGARWAPALRGTHRVNNISVVDGWKLLSYKDMHLADLVPHLEKLTGAPLPDCYQEMS 566

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSIL 587
             + +R+ +E++Y  +  ++    K  + +E  L+P D+ Y++     LS+E+   L+ +
Sbjct: 567 RWLTQRIDVEATYEPWLKKEEAHLKAFEADENLLLPMDYTYTNTGNVKLSHEVCHLLNTI 626

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           +P  + QA +I+G+TPAAL  L   ++ N  +  E
Sbjct: 627 QPRTIGQARRIQGVTPAALFELFKLVRNNQAEYQE 661


>gi|294659139|ref|XP_461483.2| DEHA2F26290p [Debaryomyces hansenii CBS767]
 gi|202953649|emb|CAG89905.2| DEHA2F26290p [Debaryomyces hansenii]
          Length = 690

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/648 (42%), Positives = 397/648 (61%), Gaps = 38/648 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIVIGGGHAGCEAA  +A+ G  T L+T     IG+ SCNP++GG+GKG L+REIDAL
Sbjct: 41  HPVIVIGGGHAGCEAATGSARSGTFTTLVTPSIDKIGTASCNPSMGGVGKGTLLREIDAL 100

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI F++LN  KG AV GPR Q DR++Y   MQ+EIL+ ENL VI+ +V 
Sbjct: 101 DGVSARITDKAGIHFKILNASKGAAVHGPRAQIDRKIYLTEMQKEILNYENLKVIEAQVE 160

Query: 126 GFNTEK-------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               E               I+  +V+ D  +++CS VV+TTGTFL G IHIG    PAG
Sbjct: 161 DIIIEPPRDQIIDTSGRNFGIVRGVVLSDGRILKCSKVVVTTGTFLGGEIHIGLSCHPAG 220

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  ++ L  +F    F  GRLKTGTP RL  KTI +     Q +D    P S++ D+
Sbjct: 221 RMGEEATSGLSKTFRDASFRLGRLKTGTPPRLSSKTIDYTNLAPQLSDYPPQPMSYLNDE 280

Query: 233 ITNRQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +  ++  ++C +T T  E H++I +N+  S      +K  GPRYCPSIE KI++F +++ 
Sbjct: 281 VDLQEQLMKCHMTSTTPELHKLIADNLDKSIHIRETVK--GPRYCPSIESKIIKFPQKST 338

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD+VYPNGIS  +P EIQ   +R +PG E V +++PGY +EYDY++P+E
Sbjct: 339 HLVWLEPEGLDTDLVYPNGISCTMPAEIQETMVRMMPGCENVTMLQPGYGVEYDYVDPRE 398

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+     K   +   R+D Y+GV
Sbjct: 399 LKMTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLAYAKKPSLDIHRSDGYLGV 458

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSR+E+RIS+R DNAD RL   G   G + E R   F   ++ 
Sbjct: 459 LVDDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLLQKGYDAGVVSESRYDHFKNEMKH 518

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARK 527
           ++ ++  LKSL  +    +        D    T    ++ LSY D S+ +   I P   K
Sbjct: 519 FDSIKEHLKSLSFSGAKWAPVLKGCNSDMNKTTVVDGWKLLSYKDVSLSD---IIPHLHK 575

Query: 528 FSS-------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           FS               ++ R+ +ES+Y  +  ++    +  + +E  L+P +++Y++  
Sbjct: 576 FSPNGELPELYSHVNRRLMGRINVESTYEPWMKKEEAHLRAYQADETLLLPLNYNYTNEG 635

Query: 575 AL--SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            L  S E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L
Sbjct: 636 NLKISYEVCHLLNTIQPTTIGQARRIQGVTPAAIFELFKLVKGNQAEL 683


>gi|283778885|ref|YP_003369640.1| glucose inhibited division protein A [Pirellula staleyi DSM 6068]
 gi|283437338|gb|ADB15780.1| glucose inhibited division protein A [Pirellula staleyi DSM 6068]
          Length = 613

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/618 (45%), Positives = 383/618 (61%), Gaps = 25/618 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EAA  AA++GA   L+T    T+G MSCNPAIGG+ KG +VREIDAL
Sbjct: 8   YDVLVIGGGHAGVEAAMAAARIGARVGLLTTNCDTVGQMSCNPAIGGVAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG V DA GIQFR+LN +KGPA+  PR QAD++ Y+  ++R I ++ N+ + Q  V 
Sbjct: 68  GGLMGEVIDATGIQFRLLNRRKGPAMHSPRAQADKKAYQFEVKRRIEAEPNIALRQETVE 127

Query: 126 GFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              TE       I  + ++ + + R  +VVLTTGTFL  ++H G++K P GR G+  ++ 
Sbjct: 128 DLLTETTADGERIVGVRVRGDVVYRAKSVVLTTGTFLSAIMHTGEVKTPGGRAGEGTTSG 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-----ITNR 236
           +  +  +  F   R KTGTP RL+G+TI + KTE Q  D+   PFSF+T +     I   
Sbjct: 188 ISGALARLGFRVSRFKTGTPCRLNGRTIDYSKTEIQPGDDDPQPFSFLTPRSFRSTIVAA 247

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C IT TN   H +I EN+  + +YSG I S GPRYCPSIEDKIVRF ++  HQ+FLE
Sbjct: 248 QMPCWITHTNAAVHDLIRENLHRAPMYSGQIHSRGPRYCPSIEDKIVRFADKESHQLFLE 307

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T  VY NGIST+LP ++Q   +R I GLE   I+R GYA+EYDY  P +L+P LE
Sbjct: 308 PEGRHTTEVYVNGISTSLPRDVQDGMLRLIAGLENAQIMRYGYAVEYDYCPPDQLWPWLE 367

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK + GLF AGQINGTTGYEEAAAQGLVAG ++A K      +  SR ++YIGV++DDL 
Sbjct: 368 TKSVPGLFFAGQINGTTGYEEAAAQGLVAGASAALKVAGKAPLTISRDEAYIGVLVDDLV 427

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           + GV EPYRMFTSRAE+R+ LR DNAD RLT +G + G +   R      + +E    R+
Sbjct: 428 TCGVDEPYRMFTSRAEFRLLLRQDNADRRLTALGAEAGLVSAERLALL--HQKEAEIARA 485

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +    +L    +   S+            ++L  P+     L ++  +  +      E++
Sbjct: 486 M---AILRRGRMGEISLE-----------KWLRRPEVDWPQLVAVEGELAEIGPDAAEQV 531

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             +  Y  Y  RQ  + +  +    + IP+  DY S+  L  E KEKLS ++P  L QAS
Sbjct: 532 MFDVKYEGYLTRQEQQVERQRRLSDKTIPERLDYQSIRHLRTEAKEKLSKIRPVTLAQAS 591

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA + L++ Y++
Sbjct: 592 RISGITPADVALVMAYLE 609


>gi|94987388|ref|YP_595321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lawsonia intracellularis PHE/MN1-00]
 gi|205831526|sp|Q1MPS7|MNMG_LAWIP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94731637|emb|CAJ55000.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 622

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/614 (45%), Positives = 371/614 (60%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D IV+GGGHAGCEA+   A+LG    LIT     IG +SCNPA+GG+ KGH+VREIDA
Sbjct: 4   TFDCIVVGGGHAGCEASMALARLGQKVLLITGNVDRIGHLSCNPAVGGIAKGHIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  AD AGIQFR LN  KGPAVR  R Q DR+LY  A++++I SQ NL V Q  V
Sbjct: 64  LGGMMGLWADKAGIQFRTLNRSKGPAVRATRAQVDRDLYMQAVKQDIFSQPNLSVWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +      +      +     V+LTTGTFL G++HIG+     GR+GD  ++ L +
Sbjct: 124 EAIIVKDGHTGGVKTALGQLFNSQYVILTTGTFLSGLMHIGQKNFSGGRLGDVGTSKLSS 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S        GRLKTGT  RL   +I +   E Q  D  +  FSF   K +  Q+ C IT 
Sbjct: 184 SLHSIGLHLGRLKTGTTPRLLKTSIDFTSMEMQLGDTPIPSFSFHGPKPSQPQVPCYITW 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I   +  S +++G I   G RYCPSIEDK+ RF +R+ HQIF+EPEGL +  
Sbjct: 244 TNEYTHDVIRSGMDRSPMFTGVITGTGARYCPSIEDKVARFADRDRHQIFVEPEGLTSQE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NGIST+LP +IQ   I TIPGLE  +++RPGYAIEYDY++P +L PTLETK + GL+
Sbjct: 304 CYINGISTSLPLDIQLALIATIPGLENAHMVRPGYAIEYDYVDPMQLHPTLETKVLPGLW 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL A +N   K  + +     R ++Y+ V++DDL ++G  EPY
Sbjct: 364 LAGQINGTSGYEEAAGQGLWAALNVFCKITRQEPFILGRDNAYLAVLVDDLVTQGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR  NAD RLTP+G K+G +G+ +   F K I + + L + L+++ + 
Sbjct: 424 RMFTSRAEYRLLLREANADIRLTPLGRKIGLVGDYQWNLFQKKISDIDTLVNRLQNIRIK 483

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              L  +    +      +  T  E L  P  + Q L  I  D    S  V    +    
Sbjct: 484 PDTLDPSIFLELGESIPNRAYTLEELLKRPSITFQTLRKIYSDLPITSEDVYLETETIIK 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ    +     E   +PK+ DY+ +  LS+E+ EKL I++P  L QA +I G+
Sbjct: 544 YAGYLDRQEELVQRSAKLEHSYLPKEIDYTKVAGLSSEVIEKLQIVRPQTLGQAGRISGV 603

Query: 602 TPAALNLLLIYIKK 615
           TPAA+  L IY+KK
Sbjct: 604 TPAAITCLEIYLKK 617


>gi|325137026|gb|EGC59622.1| glucose-inhibited division protein A [Neisseria meningitidis M0579]
 gi|325202972|gb|ADY98426.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240149]
 gi|325203314|gb|ADY98767.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240355]
 gi|325205285|gb|ADZ00738.1| glucose-inhibited division protein A [Neisseria meningitidis
           M04-240196]
 gi|325207230|gb|ADZ02682.1| glucose-inhibited division protein A [Neisseria meningitidis
           NZ-05/33]
          Length = 628

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 394/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|311085751|gb|ADP65833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 628

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 395/621 (63%), Gaps = 5/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV+EID
Sbjct: 5   RNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +++ E
Sbjct: 65  ALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLILEAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +  L 
Sbjct: 125 VKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSAIDLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   + +QI C +
Sbjct: 185 VRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQIPCYL 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPEGL++
Sbjct: 245 THTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPEGLSS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K I G
Sbjct: 305 IKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESKLIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++G  E
Sbjct: 365 LFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + LK   
Sbjct: 425 PYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRLKKNK 484

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQI 538
           ++  +L +  +    +    K  +  E L  P    Q+L S+         L  I +++ 
Sbjct: 485 ISPISLDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIGQIEN 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ QAS+I
Sbjct: 545 EIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+TPAA+++LLI++KK + K
Sbjct: 605 SGITPAAISILLIHLKKESYK 625


>gi|225025383|ref|ZP_03714575.1| hypothetical protein EIKCOROL_02281 [Eikenella corrodens ATCC
           23834]
 gi|224941827|gb|EEG23036.1| hypothetical protein EIKCOROL_02281 [Eikenella corrodens ATCC
           23834]
          Length = 631

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/619 (46%), Positives = 395/619 (63%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYIREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK++ 
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEAQWRMFNEKREAIEREIQRLKTMW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++    P+ R     VIE++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAEPECR-LPENVIEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P++ DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDLETLRLPENIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+ LL++++K+
Sbjct: 607 RISGVTPAAVALLMVHLKR 625


>gi|78189959|ref|YP_380297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium chlorochromatii CaD3]
 gi|123579142|sp|Q3AP21|MNMG_CHLCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78172158|gb|ABB29254.1| Glucose-inhibited division protein A subfamily [Chlorobium
           chlorochromatii CaD3]
          Length = 621

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/620 (43%), Positives = 392/620 (63%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEA   AA++GA+  LIT   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAILAAARMGATCLLITSDLTAIARMSCNPAIGGMAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KGPA+  PR QADR LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRLLNRSKGPAMHSPRAQADRTLYSLYMRTIIEREPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
              T+    + + +  + +I   + +LT GTFL G+IH+G      GR + + P   L  
Sbjct: 122 AIETKGECFAGVRITSSRVIEGKSAILTCGTFLNGLIHVGMNHFAGGRTIAEPPVVGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           +     F  GRLKTGTP R+D ++I + K ++Q  D   I FSF +   + ++Q+ C IT
Sbjct: 182 NLCAHGFQAGRLKTGTPPRIDSRSIDYRKVDEQPGDIEPILFSFESKGALQSKQVSCFIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH I+ +  + S +++G ++  GPRYCPS+EDKI RF ++N H IFLEPEG++T+
Sbjct: 242 KTTEETHAILRKGFERSPLFTGKVQGIGPRYCPSVEDKIFRFPDKNSHHIFLEPEGIDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + + +IPGLE+V +IRPGYAIEYDY  P ++  TLET+ I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLEGLHSIPGLEQVKMIRPGYAIEYDYFYPHQIQATLETRLIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+  K  K + +  +R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINAVLKMRKHEPLILTRSDAYIGVLIDDLITKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G ++G + E R +   + I++ N +++LL  + L
Sbjct: 422 YRMFTSSAEHRLLLRHDNADIRLHEFGYRVGLLPEHRYQATRQKIEQINAVKTLLSQIRL 481

Query: 484 TS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS------LVIER 535
            S   N     + + +    +     L  P  ++  L +  P+     S      LV E+
Sbjct: 482 ESGLANKLLQELEYGEVTGAQQVTTLLKRPRVTLAKLLATSPELHSQLSNISNNPLVYEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R  + A++I+  E   IP   DY ++  LSNE +EKL   +P N+ QA
Sbjct: 542 VEIDCKYEGYLKRDALVAEKIQRLEAHHIPALLDYHAIAGLSNEGREKLKKHRPENIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L++++ +
Sbjct: 602 SRILGVSPSDISILMVHLGR 621


>gi|226952640|ref|ZP_03823104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ATCC 27244]
 gi|226836629|gb|EEH69012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ATCC 27244]
          Length = 644

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/617 (46%), Positives = 385/617 (62%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 23  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 82

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  ++ A++  + +Q NLD+ Q  
Sbjct: 83  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRFKAAIRHTLENQANLDIFQQA 142

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 143 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 202

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 203 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 262

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 263 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 322

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 323 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 382

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 383 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 442

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   +++ ++      S L+ L 
Sbjct: 443 PYRMFTSRAEYRLMLREDNADQRLTEIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 502

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 503 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFAQIAELT--GSEVSQQVGEQIEIA 560

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF++  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 561 VKYEGYINRQHEDVAQLKRLEETKIPADFEFDGISGLSREITLKLKTVRPETLAQASRIP 620

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ LL+I I+K+
Sbjct: 621 GVTPAAVQLLMITIRKS 637


>gi|291278440|ref|YP_003495275.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
 gi|290753142|dbj|BAI79519.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
          Length = 623

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/630 (46%), Positives = 386/630 (61%), Gaps = 24/630 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+G GHAGCEAA  AA++GA T LIT    TI  MSCNPAIGGL KG++V+++
Sbjct: 6   DKTYDVIVVGAGHAGCEAALAAARMGAKTLLITIYVETIAQMSCNPAIGGLAKGNIVKDL 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D  GIQF+VLN KKGPAVR  R QAD++LYR  M   ++ QENLDV QG
Sbjct: 66  DALGGEMAKNIDETGIQFKVLNKKKGPAVRSSRAQADKKLYRERMISVLMDQENLDVKQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E +I+  +V+      +   V+LTTGTFL G+IHIG  + PAGR  +  S  L
Sbjct: 126 VVTDIVVENDIVKGVVVDYGLYFKSDKVILTTGTFLNGLIHIGDKRYPAGRANEFASVDL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  ++ F   RLKTGTPARLD  TI +   E+Q  D     FSF +      Q+ C I
Sbjct: 186 AEALKRY-FPLERLKTGTPARLDADTINFSVLEEQPGDNEPKMFSFESKGPKLPQVSCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +Y+G IK  GPRYCPSIEDK+ +F +++ HQIFLEPEGL++
Sbjct: 245 TYTNEKTHSIINENMHRSPLYAGVIKGIGPRYCPSIEDKVKKFPDKSRHQIFLEPEGLDS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y NG S++LP ++Q    R++ GLE V  +RP YAIEYD++ P  L+PTLETKKI G
Sbjct: 305 REIYANGFSSSLPIDVQIAMYRSVKGLENVEFVRPAYAIEYDFVQPTNLYPTLETKKIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAA QG VA +N+    +  + I   R +SYIGVMIDDL +KGV E
Sbjct: 365 LYFAGQINGTTGYEEAAGQGFVAAVNAVLSYDNKEFI-LGRDESYIGVMIDDLVTKGVDE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+F SR+EYR+ LR DNA+ RL   G  LG I   R+ R+ ++++E       +K L 
Sbjct: 424 PYRVFHSRSEYRLLLREDNAEFRLISKGYDLGLI---RKSRYERFLREKEMFEKEMKRLD 480

Query: 483 LTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSL 531
               N        LS  +I        +   E L  P+ S   I+  +    + R     
Sbjct: 481 EIKVNPDKHNQDKLSKYNIKINNPVSLK---ELLRRPEVSYEIIKEFWGGVENER----- 532

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+++I   Y  Y  +QM E +  +  E   IP   D+S +  L  E  EK   +KP  
Sbjct: 533 VAEQIEISVKYEGYIAKQMQEVERFRKIENVRIPDTLDFSKIKGLRREFIEKFERIKPKT 592

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L QAS+I G+TPAA++LL IYI+    K N
Sbjct: 593 LGQASRIPGVTPAAISLLHIYIEDEKRKRN 622


>gi|169777055|ref|XP_001822993.1| translation optimization protein 1 [Aspergillus oryzae RIB40]
 gi|83771730|dbj|BAE61860.1| unnamed protein product [Aspergillus oryzae]
          Length = 688

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/635 (44%), Positives = 390/635 (61%), Gaps = 23/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L V++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELLATEGLSVLEG 154

Query: 123 EVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I  S VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVVITTGTFLGGEIHIGMTVYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDAKTIDFKSLEVQKGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H II  N+  S      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 275 VQVGDEGQLNCWMTHTNEASHDIIRANLDKSIHIRETVR--GPRYCPSLESKIIRFQDKQ 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+PTLETK ISGL+LAGQINGTTGYEEA  QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPTLETKLISGLYLAGQINGTTGYEEATGQGIIAGTNAGLSAQGRSPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARNAGVVSDKRWRHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDAR 526
            + N L++LL +  ++S   S      + D   R+A + L   +  I  L      P  +
Sbjct: 513 AQINELQTLLANTRMSSNAWSRRGFKARVDTSIRSALDLLCLDEVEIDALIPHIESPSGK 572

Query: 527 -----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ    ++   +E  L+P D DYS +  +S E K
Sbjct: 573 VYTPSSFAPEIRSRVAIERRYAPYVARQETAVRKFLQDESLLLPPDLDYSKVKGISTEEK 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + L  ++P ++  A +IEG+TPA    LL ++++ 
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGAIRLLAHVRRT 667


>gi|147679251|ref|YP_001213466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pelotomaculum thermopropionicum SI]
 gi|205375704|sp|A5CY45|MNMG_PELTS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146275348|dbj|BAF61097.1| NAD/FAD-utilizing enzyme apparently [Pelotomaculum
           thermopropionicum SI]
          Length = 631

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/620 (43%), Positives = 388/620 (62%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEA   AA++G  T ++T     +  M CNPA+GG  KGHLVRE+DA
Sbjct: 8   TYDVVVVGAGHAGCEAGLAAARMGCRTLVLTLNMDNVALMPCNPAVGGPAKGHLVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G   D A IQ R+LN  KGPAV   R QAD+  Y+L M++ +  Q  LD+ Q  V
Sbjct: 68  LGGEIGLNTDRASIQMRLLNTGKGPAVHALRAQADKRYYQLCMKKVLECQPGLDLKQALV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK  +  ++    +      VVLTTGT+L+G I IG L  P G  G  PS +L +
Sbjct: 128 EKIMVEKGKVRGVLTSTGARFEAGAVVLTTGTYLKGRIIIGDLSFPGGPNGQFPSVTLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GR KTGTPAR+D  +I + K   Q  D++   FSF+++     Q+ C +T 
Sbjct: 188 CLADLGIKLGRFKTGTPARVDRNSIDFSKMSIQPGDKKTHNFSFISEIKEREQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +Y+G IKS GPRYCPSIE K+VRF ++  HQ+F+EPEG NT  
Sbjct: 248 TTEETHRIIRENLHRAPLYTGVIKSQGPRYCPSIETKVVRFSDKPAHQVFIEPEGRNTTE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q   +RT+PGLE+V ++RPGYAIEYDY+   +L P+LETK I GLF
Sbjct: 308 MYVQGMSTSLPEDVQLAMLRTLPGLERVEMMRPGYAIEYDYVVATQLKPSLETKAIPGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      +    +R+++YIGV+IDDL +K + EPY
Sbjct: 368 TAGQINGTSGYEEAAAQGIMAGINAALYVKNREPFILNRSEAYIGVLIDDLVTKEIDEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----RSLLKS 480
           RM TSRAEYR+ LR DNAD RLT  G K+G +     +R+AKY ++   +    + L K+
Sbjct: 428 RMLTSRAEYRLLLRQDNADLRLTEKGYKIGLVSP---ERYAKYERKKKLVEEERQRLEKT 484

Query: 481 LVLTSKNL-----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +V     +     ++ S    Q G +      L  P+   ++L  I  +       V E+
Sbjct: 485 MVAVGDEVKRVLEAANSPGLPQQGISLAG--LLRRPEIGYEHLLQIPGNHPDLPDEVREQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  +Q  + ++ +  E++ IP+D DY  +  LS E +EKL +++P ++ QA
Sbjct: 543 VEIQIKYEGYIKKQQAQVEKFRRLEEKKIPQDIDYGRVRGLSVEAREKLEMIRPASIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++LLIY+++
Sbjct: 603 SRIAGVTPADVSVLLIYLER 622


>gi|238494138|ref|XP_002378305.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus flavus NRRL3357]
 gi|220694955|gb|EED51298.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus flavus NRRL3357]
          Length = 688

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/635 (44%), Positives = 390/635 (61%), Gaps = 23/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L V++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELLATEGLSVLEG 154

Query: 123 EVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I  S VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVVITTGTFLGGEIHIGMTVYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDAKTIDFKSLEVQKGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H II  N+  S      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 275 VQVGDEGQLNCWMTHTNEASHDIIRANLDKSIHIRETVR--GPRYCPSLESKIIRFQDKQ 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+PTLETK ISGL+LAGQINGTTGYEEA  QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPTLETKLISGLYLAGQINGTTGYEEATGQGIIAGTNAGLSAQGRSPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARNAGVVSDKRWRHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDAR 526
            + N L++LL +  ++S   S      + D   R+A + L   +  I  L      P  +
Sbjct: 513 AQINELQTLLANTRMSSNAWSRRGFKARVDTSIRSALDLLCLDEVEIDALIPHIESPSGK 572

Query: 527 -----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ    ++   +E  L+P D DYS +  +S E K
Sbjct: 573 VYTPSSFAPEIRSRVAIERRYAPYVARQETAVRKFLQDESLLLPPDLDYSKVKGISTEEK 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + L  ++P ++  A +IEG+TPA    LL ++++ 
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGAIRLLAHVRRT 667


>gi|331001497|ref|ZP_08325115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parasutterella excrementihominis YIT 11859]
 gi|329568226|gb|EGG50043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parasutterella excrementihominis YIT 11859]
          Length = 636

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/623 (46%), Positives = 386/623 (61%), Gaps = 14/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+GGG+AG EAAA  A++ A T L+TH    +G  SCNP+IGG+GK HLV+E+DAL
Sbjct: 9   YEVIVVGGGNAGIEAAAACARMKAKTLLVTHNLDNLGQQSCNPSIGGIGKSHLVKEVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL+ +  D +GIQFRVLN  KG AVR  R Q DR LY+  M+  I + ENL +I+  V 
Sbjct: 69  DGLIAKATDFSGIQFRVLNASKGAAVRATRAQIDRRLYKYQMRTRIEAIENLSLIEEAVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ + ++    I+   VVL  GTFL G + IG+    AGR GD  S +L  +
Sbjct: 129 ALLLENGKVAGVYLRSGISIKAKAVVLCAGTFLNGKVFIGQTSYLAGRSGDPSSVNLGIN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGIT 243
             +      RLKTGTPARLDG+TI + K E+Q  D   +P FS+M + +   +Q+ C IT
Sbjct: 189 LAELGLPKARLKTGTPARLDGRTIDFSKCERQLGDSEPVPVFSYMGSPEDHPQQVPCWIT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH  I + +  S +++G I+  GPRYCPSIEDKI +F  +N H +FLEPEGLNT 
Sbjct: 249 DTNQTTHDFIRKGLDRSPLFTGVIEGIGPRYCPSIEDKIHKFASKNSHHVFLEPEGLNTY 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q  FI +I GLE V+IIRPGYAIEYDY +P  L   LE+K+   L
Sbjct: 309 EYYPNGISTSLPYDVQVNFIHSIKGLENVHIIRPGYAIEYDYYDPTHLKDNLESKEFDNL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQ+NGTTGYEEAAAQGL+AGIN+  K    +     R  +Y+GVM++DL +KGV EP
Sbjct: 369 FLAGQVNGTTGYEEAAAQGLMAGINAVLKIRDEEPFLLRRDQAYLGVMVNDLITKGVNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT IG KLG + E R K F +  +     R  LKS+ +
Sbjct: 429 YRMFTSRAEYRLSLREDNADERLTEIGYKLGVVSEERWKFFQEKRERLARERERLKSIWV 488

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNL--------FSICPDARKFSSLV 532
               L   S+      +  K    Y  L  P+   Q L         S+ P     S   
Sbjct: 489 NPGVLDKFSLEEVVGAELSKESQLYVMLKRPEVDYQKLKLLKTKDGESLLPPPY-LSDED 547

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E L  +  Y+ Y  +Q  E ++   + + +IP+DFDY S   LS E+ +KL  +KP  L
Sbjct: 548 AETLTTKVKYSGYEDKQKAEVQKNLEKIETVIPEDFDYDSAKGLSFEITQKLKKIKPRTL 607

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            +A  I G+TPAA+++LL+Y+K+
Sbjct: 608 GEALNISGVTPAAISILLVYLKR 630


>gi|15642768|ref|NP_232401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147674621|ref|YP_001218410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae O395]
 gi|153820114|ref|ZP_01972781.1| glucose inhibited division protein A [Vibrio cholerae NCTC 8457]
 gi|153821973|ref|ZP_01974640.1| glucose inhibited division protein A [Vibrio cholerae B33]
 gi|227082887|ref|YP_002811438.1| glucose inhibited division protein A [Vibrio cholerae M66-2]
 gi|229508288|ref|ZP_04397792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae BX 330286]
 gi|229508640|ref|ZP_04398135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae B33]
 gi|229517144|ref|ZP_04406590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC9]
 gi|229520164|ref|ZP_04409591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TM 11079-80]
 gi|229606562|ref|YP_002877210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MJ-1236]
 gi|254291137|ref|ZP_04961934.1| glucose inhibited division protein A [Vibrio cholerae AM-19226]
 gi|254851566|ref|ZP_05240916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MO10]
 gi|255746815|ref|ZP_05420761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholera CIRS 101]
 gi|262155895|ref|ZP_06029017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae INDRE 91/1]
 gi|262167091|ref|ZP_06034806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC27]
 gi|298501187|ref|ZP_07010986.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MAK 757]
 gi|11386838|sp|Q9KNG4|MNMG_VIBCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|172047493|sp|A5F468|MNMG_VIBC3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811522|sp|C3LSK0|MNMG_VIBCM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9657377|gb|AAF95914.1| glucose inhibited division protein A [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126509345|gb|EAZ71939.1| glucose inhibited division protein A [Vibrio cholerae NCTC 8457]
 gi|126520512|gb|EAZ77735.1| glucose inhibited division protein A [Vibrio cholerae B33]
 gi|146316504|gb|ABQ21043.1| glucose inhibited division protein A [Vibrio cholerae O395]
 gi|150422982|gb|EDN14932.1| glucose inhibited division protein A [Vibrio cholerae AM-19226]
 gi|227010775|gb|ACP06987.1| glucose inhibited division protein A [Vibrio cholerae M66-2]
 gi|227011997|gb|ACP08207.1| glucose inhibited division protein A [Vibrio cholerae O395]
 gi|229342758|gb|EEO07749.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TM 11079-80]
 gi|229346207|gb|EEO11179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC9]
 gi|229354354|gb|EEO19282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae B33]
 gi|229354561|gb|EEO19483.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae BX 330286]
 gi|229369217|gb|ACQ59640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MJ-1236]
 gi|254847271|gb|EET25685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MO10]
 gi|255735572|gb|EET90971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholera CIRS 101]
 gi|262024477|gb|EEY43163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC27]
 gi|262030347|gb|EEY48989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae INDRE 91/1]
 gi|297540059|gb|EFH76121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MAK 757]
          Length = 631

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|329925075|ref|ZP_08280019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. HGF5]
 gi|328940194|gb|EGG36526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. HGF5]
          Length = 628

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 389/617 (63%), Gaps = 12/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVYALRAQADKFSYQHTMKETMEKEEKLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   IV Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  L +
Sbjct: 127 DQLIVEDGVCVGIVTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVKLAH 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R+   TI + KTE Q  DE    FS+ T    N Q+ C +T 
Sbjct: 187 NLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDENPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSVDTHKIINDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKNTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST++PE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ GLF
Sbjct: 307 YYVQGLSTSMPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVILDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI-------QEYNFLRSL 477
           R+ TSRAEYR+ LR DNAD RLT IG  +G I E   +R+AK++       QE   LR  
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISE---ERYAKFLLKKQLVEQEIERLRQT 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
               V  +  L +   +   DG        L  P+ +   + S+ P   +    + E+++
Sbjct: 484 KVKPVEVNAMLEAAGSAPIVDGSNMLT--ILRRPEITFAMVESLSPSPYELDEEMKEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+
Sbjct: 542 IQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDEINGLAMEARQKLNKIRPISIGQASR 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA +++LL+Y++
Sbjct: 602 IAGVTPADISILLVYLE 618


>gi|294649953|ref|ZP_06727345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824182|gb|EFF82993.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 661

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/617 (46%), Positives = 385/617 (62%), Gaps = 6/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 40  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  ++ A++  + +Q NLD+ Q  
Sbjct: 100 ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRFKAAIRHTLENQANLDIFQQA 159

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 160 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 219

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 220 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 279

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 280 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 339

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 340 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 399

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 400 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 459

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   +++ ++      S L+ L 
Sbjct: 460 PYRMFTSRAEYRLMLREDNADQRLTEIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 519

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 520 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFAQIAELT--GSEVSQQVGEQIEIA 577

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF++  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 578 VKYEGYINRQHEDVAQLKRLEETKIPADFEFDGISGLSREITLKLKTVRPETLAQASRIP 637

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+ LL+I I+K+
Sbjct: 638 GVTPAAVQLLMITIRKS 654


>gi|325129111|gb|EGC51960.1| glucose-inhibited division protein A [Neisseria meningitidis N1568]
          Length = 628

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 392/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYGALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|319940689|ref|ZP_08015031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805840|gb|EFW02607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sutterella wadsworthensis 3_1_45B]
          Length = 647

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/626 (46%), Positives = 397/626 (63%), Gaps = 18/626 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  +A++G ST L+TH   T+G +SCNP+IGG+GKGHLV+E+DA
Sbjct: 6   NFDVIVIGCGHAGAEAALASARMGCSTLLVTHNLDTVGQLSCNPSIGGIGKGHLVKELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D +GIQFR+LN  KG AV   R Q DR+LYR AM++ I SQENL V Q  V
Sbjct: 66  LGGTMGQVTDESGIQFRILNRSKGAAVHASRAQIDRQLYRRAMRKRIESQENLKVFQMAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V           VVL+ GTFL G++HIG     AGRMGD  S  L  
Sbjct: 126 DDLLVENGCARGVVTNTGIRFHSKAVVLSAGTFLNGLVHIGLEHFTAGRMGDPASVRLGE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGI 242
              +     GRLKTGTP R+D +TI + + E Q+ D    P FS M    T+  Q+ C I
Sbjct: 186 RLKELGLPQGRLKTGTPCRIDARTIDFSRCEIQWGDLNPTPSFSLMQPTATHPEQMPCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H +I+ N+  S +Y+G I+  GPRYCPSIEDK+ RF E++ HQ+FLEPEG++ 
Sbjct: 246 THTTREMHELILANLDRSPMYAGVIQGIGPRYCPSIEDKVKRFAEKDSHQVFLEPEGIHV 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP ++Q + +  +PGLEK ++ RPGYAIEYDY +P+EL  + E+K + G
Sbjct: 306 REYYPNGISTSLPFDVQLKMVHMMPGLEKAHLTRPGYAIEYDYYDPRELKRSFESKVMEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+A  +   D     R ++Y+GVM DDLT+KGV E
Sbjct: 366 LFCAGQINGTTGYEEAAAQGLLAGANAALYARGDDAWTPRRDEAYLGVMADDLTTKGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR++LR DNAD RLTPIG KLG + + R + F +  +        L+   
Sbjct: 426 PYRMFTSRAEYRLNLREDNADTRLTPIGRKLGLVDDARWEFFCRKTERIERAMEALRETW 485

Query: 483 LTSKNLSSTS------ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLV 532
           +  K +          ++ +++   R+    L+ P+ ++++L ++       A  FS L 
Sbjct: 486 VNPKLIERAEAERVLGVAIEREYSLRS---LLARPNVTMESLMTLKRTDGSLAHDFSELN 542

Query: 533 IE---RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            E   R+++E  YA Y  RQ  E ++    E  +IP++ DY  +  LS E+++KL   +P
Sbjct: 543 KEEQSRVEVEVKYAGYIDRQKDEIQKTLANETLVIPREMDYDQVMGLSFEVRQKLKAAQP 602

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QAS+I G+TPAA+ LLL+++K+
Sbjct: 603 ETVGQASRISGVTPAAVALLLVHLKR 628


>gi|169409548|gb|ACA57894.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Callicebus moloch]
          Length = 690

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 292/630 (46%), Positives = 411/630 (65%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYSESVILTTGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D   +PFSFM + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVLGRLKTGTPPRIAKESINFSILNKQTPDNPSLPFSFMNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++     I+  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNSRVDEIVLKNLHLNSHVKETIR--GPRYCPSIESKVLRFPNRQ-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSVTLPAELQEKIITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRINQKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S   KNL    SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFSSSKWKNLIPQASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSDEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|153212965|ref|ZP_01948559.1| glucose inhibited division protein A [Vibrio cholerae 1587]
 gi|153829679|ref|ZP_01982346.1| glucose inhibited division protein A [Vibrio cholerae 623-39]
 gi|124116191|gb|EAY35011.1| glucose inhibited division protein A [Vibrio cholerae 1587]
 gi|148874855|gb|EDL72990.1| glucose inhibited division protein A [Vibrio cholerae 623-39]
          Length = 631

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|219681390|ref|YP_002467775.1| glucose-inhibited division protein A [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471063|ref|ZP_05635062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254811506|sp|B8D8G6|MNMG_BUCA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219624233|gb|ACL30388.1| glucose-inhibited division protein A [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 628

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/626 (46%), Positives = 396/626 (63%), Gaps = 15/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV+EID
Sbjct: 5   RNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +++ E
Sbjct: 65  ALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLILEAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +  L 
Sbjct: 125 VKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSAIDLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   + +QI C +
Sbjct: 185 VRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQIPCYL 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPEGL++
Sbjct: 245 THTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPEGLSS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K I G
Sbjct: 305 IKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESKLIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++G  E
Sbjct: 365 LFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLR--- 475
           PYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +     E N L+   
Sbjct: 425 PYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRLKKNK 484

Query: 476 -SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VI 533
            S +       K L + S+      K  +  E L  P    Q+L S+         L  I
Sbjct: 485 ISPISPDADILKKLYNISLI-----KEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAI 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            +++ E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ 
Sbjct: 540 GQIENEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+TPAA+++LLI++KK + K
Sbjct: 600 QASRISGITPAAISILLIHLKKESYK 625


>gi|325145389|gb|EGC67666.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240013]
          Length = 628

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 394/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|319639636|ref|ZP_07994383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria mucosa C102]
 gi|317399207|gb|EFV79881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria mucosa C102]
          Length = 631

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/622 (46%), Positives = 394/622 (63%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + IQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 68  ALGGAMALATDKSSIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       + S VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKASAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSADMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++ PDA+  ++L   V+
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAQPETALADSVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|166092135|gb|ABY82114.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Callithrix jacchus]
          Length = 703

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/630 (46%), Positives = 410/630 (65%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +++ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVILVDGSTVYSESVILTTGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSFM + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSLPFSFMNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++     I+  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETIR--GPRYCPSIESKVLRFPNRQ-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVNRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S   KNL    SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFSSSKWKNLIPEASISTSRSLPVR-ALDVLKYEEVDVDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|299541771|ref|ZP_07052094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lysinibacillus fusiformis ZC1]
 gi|298725509|gb|EFI66150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lysinibacillus fusiformis ZC1]
          Length = 630

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/622 (45%), Positives = 399/622 (64%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GAST ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGASTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +    NL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLEETPNLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVKGVITQIGAVYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  D+    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTINYDKTEIQPGDDVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      D +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKDELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--V 482
           R+ TSRAEYR+ LR DNAD RL  +   +G I    Q+R+A + ++   + + +  L  V
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLVELAYNMGMI---PQERYASFNEKKELIENEIARLREV 485

Query: 483 LTSKNLSSTSI------SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +   N ++ S+      S  +DG  R A + L  P+   + + S+ P   + +  V E++
Sbjct: 486 IIKPNEATQSVIRSVGGSELKDG-IRGA-DLLKRPEMHYELISSLIPAEIELADEVKEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS
Sbjct: 544 EIQLKYEGYIEKALQQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++LL+YI++  +
Sbjct: 604 RISGVNPADISILLVYIEQGKI 625


>gi|325131023|gb|EGC53749.1| glucose-inhibited division protein A [Neisseria meningitidis
           OX99.30304]
          Length = 628

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/621 (46%), Positives = 392/621 (63%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|212702493|ref|ZP_03310621.1| hypothetical protein DESPIG_00510 [Desulfovibrio piger ATCC 29098]
 gi|212674154|gb|EEB34637.1| hypothetical protein DESPIG_00510 [Desulfovibrio piger ATCC 29098]
          Length = 643

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/624 (45%), Positives = 376/624 (60%), Gaps = 15/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV GGGHAG EAA   A+LG S  LI+     +G +SCNPAIGGL KGH+VREIDAL
Sbjct: 10  FDCIVTGGGHAGSEAAVALARLGLSVLLISGNVDRLGYLSCNPAIGGLAKGHMVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA GIQFR LN+ KGPAVR  R Q DRE Y+  +++ + S   L + Q  V 
Sbjct: 70  GGMMGLWADAGGIQFRTLNMSKGPAVRATRAQIDREAYQKVLKKTLFSTPGLRIWQDSVT 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    S +            V+LTTGTFL G+IHIG   +P GR+GD+P+  L +S
Sbjct: 130 EVLEENGHASGVRTAQGLTFHARHVLLTTGTFLAGLIHIGLTHLPGGRLGDAPATGLSDS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGT  RL   +I + K E+Q  D     FSF        Q+ C IT T
Sbjct: 190 LRRLGLTLGRLKTGTTPRLLRASIDFSKLEEQPGDTPPPRFSFRGPGPVLPQVPCHITWT 249

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H  I      S +++G I+  G RYCPSIEDK+ RF ER  HQIFLEPEGL++  V
Sbjct: 250 NEAAHAAIRSGFDRSPLFTGVIQGTGARYCPSIEDKVARFPERERHQIFLEPEGLDSPEV 309

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q   I  IPGLE   ++RPGYAIEYDY NP +L  TLETK + GL+L
Sbjct: 310 YANGISTSLPLDVQQAMIHAIPGLEHAVMVRPGYAIEYDYANPVQLHGTLETKALPGLWL 369

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N A +  +LD     R  SY+ V++DDL + G  EPYR
Sbjct: 370 AGQINGTSGYEEAAAQGLWAALNIACREKELDPFVPGRDSSYMAVLVDDLVTSGTEEPYR 429

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL---V 482
           MFTSRAE+R+ LR DNAD RLTP+G ++G +GE + + F   ++  + +R LL+ +   +
Sbjct: 430 MFTSRAEHRLLLREDNADVRLTPLGRRIGLVGEEQWRLFNDKMEHGHAVRRLLQQVRVQL 489

Query: 483 LTSKNLSSTSISFKQDGKTRTAY------EFLSYPDFSIQNLFSI-CPDARKFSS---LV 532
               + + T+ +  ++ + R A       E L  PD  ++ L  I  P A   +      
Sbjct: 490 TDGDDATQTAPATPEETELRAALRGRTLEEALRRPDMDLERLARISAPLAEALADRDLRD 549

Query: 533 IERLQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +E +Q++  YA Y  RQ  + A+  + E   L P D DY  +  LS E++EKL  ++P N
Sbjct: 550 LETVQVDVKYAGYLERQRELIARAARLESVEL-PADLDYRQVAGLSREVEEKLDRVRPRN 608

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QA +I G+TPAA+  L I++ K
Sbjct: 609 LGQAGRISGVTPAAVGCLEIHLHK 632


>gi|255068632|ref|ZP_05320487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sicca ATCC 29256]
 gi|255047130|gb|EET42594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sicca ATCC 29256]
          Length = 636

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 392/618 (63%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSRLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ Q +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIQLVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANALQYIRGQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVSEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DY+ +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYAKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 608 ISGVTPAAVALLMVHLKR 625


>gi|255945871|ref|XP_002563703.1| Pc20g12180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588438|emb|CAP86547.1| Pc20g12180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 688

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/635 (44%), Positives = 389/635 (61%), Gaps = 23/635 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDV+VIGGGHAG EA A AA+ GA TAL+T     IG  SCNP+ GG+GKG ++RE+D
Sbjct: 35  RPYDVVVIGGGHAGSEACAAAARSGARTALVTPSLENIGVCSCNPSFGGIGKGTMIREVD 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+ GR+ D AG+ FRVLN  KGPAV GPR Q DR+LY+  M  E+   ENL++++G+
Sbjct: 95  AMDGVAGRIIDKAGVMFRVLNRSKGPAVWGPRAQIDRDLYKRYMSEELAGTENLNIVEGK 154

Query: 124 VAG--FNTE--------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA    +TE        +  I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVLSTEGIENTPGAQGKIVGVRLESGEVISTGRVVITTGTFLGGEIHIGMDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++P+  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   +
Sbjct: 215 MGEAPTYGLSKSLREAGFQLGRLKTGTPPRLDKKTIDFSALEVQKGDSPPHPFSYLNKTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C +T TN   H II  N+  S      ++  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQLTCWMTHTNEAAHEIIRANLDKSIHIRETVR--GPRYCPSLESKIIRFKDKTQ 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           HQI+LEPEG    DV+YPNGIS  +P + Q+  +R + GLE V +++PGY +EYDYI+P+
Sbjct: 333 HQIWLEPEGFAPNDVIYPNGISMTVPADAQYAMLRVVRGLENVTMLQPGYGVEYDYIDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG+VAG N+  +S     +  +R+D +IG
Sbjct: 393 NLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIVAGTNAGLESQNRSPLTLTRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R   F+    
Sbjct: 453 IMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARDAGVVSDKRWSHFSDTEA 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           +   L++LL +  L+S   S      + D   R+A + L      I  L           
Sbjct: 513 QIQELQTLLGNTKLSSSAWSRKGFKVRSDTSIRSALDILCLDGTDINTLIPTIESPTGTA 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                F+  ++ R+ IE  YA Y  RQ   A+  + +E  L+P D DYS +  +SNE ++
Sbjct: 573 YTPASFAPEILTRVAIEGRYAPYLKRQEKMAERFQQDENLLLPADLDYSMVHGISNEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            L  ++P ++  A +IEG+TP     LL++++K +
Sbjct: 633 VLQRVRPVSVGMAKRIEGVTPVGALRLLMHVRKGS 667


>gi|332800541|ref|YP_004462040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Tepidanaerobacter sp. Re1]
 gi|332698276|gb|AEE92733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Tepidanaerobacter sp. Re1]
          Length = 628

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 273/612 (44%), Positives = 378/612 (61%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA   A++G  T        +I  M+CNP+IGG GKG++VREIDAL
Sbjct: 8   YDVAVVGIGHAGCEAALATARMGLKTVAFAINLDSIALMACNPSIGGPGKGNMVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D   IQ R+LN KKGPAVR  R Q D+  Y  AM+  + SQENLD++Q EV 
Sbjct: 68  GGQMAINVDKTFIQVRMLNTKKGPAVRALRAQLDKRAYCAAMKYTVESQENLDIVQEEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V +   +     V+LTTG +LRG I IG L   +G  G  P+N L  S
Sbjct: 128 KILVEGEKVKGVVTKTGGVYEARAVILTTGVYLRGRIVIGDLSYSSGPSGLFPANELSKS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GR KTGTP R+   ++ + K   Q  D+ + PFS+ ++KI   Q+ C +T T
Sbjct: 188 LESLGLELGRFKTGTPPRIHKDSVDFSKMIIQPGDDVITPFSYTSEKIQREQVPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH+II EN+  + +Y+G+IK  GPRYCPS+E KIV F ++  HQIF+EPEG  T  +
Sbjct: 248 NETTHKIIAENLHRAPLYTGEIKGVGPRYCPSVEMKIVNFKDKKSHQIFIEPEGNGTREM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LP ++Q     ++ GLE   I+R GYAIEYD++ P +L PTLETK + GL++
Sbjct: 308 YVQGLSTSLPADVQIAMTHSVKGLENAKIMRFGYAIEYDFVVPTQLKPTLETKAVQGLYM 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL+AGIN+A K  + + +  SR+D+YIGV+IDDL +KGV EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGLIAGINAALKIKEKEPLVLSRSDAYIGVLIDDLVTKGVTEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RL  IG  +G I + R ++F K  +  +     LKS+ +T 
Sbjct: 428 ILTSRAEYRLLLRQDNADLRLMDIGHSIGLISDDRYEKFLKKKRLIDDEIKRLKSIKITP 487

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               N   T ++  +     T  E L  P+   + L  +  D  +    VIE+++I ++Y
Sbjct: 488 TAKVNEVLTGLNTAKLNSPSTLAELLKRPELDYEKLKVLDEDREQLPDDVIEQVEIATAY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQM +  + K  E + IP D DY  +  L  E +EKL  +KP ++ QAS+I G+ 
Sbjct: 548 EGYIERQMSQVAQFKKMENKKIPDDIDYDEIYGLGFEAREKLKEVKPISIGQASRISGVN 607

Query: 603 PAALNLLLIYIK 614
           P+ + +LLIY++
Sbjct: 608 PSDVTVLLIYLE 619


>gi|161870869|ref|YP_001600043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis 053442]
 gi|161596422|gb|ABX74082.1| glucose inhibited division protein A [Neisseria meningitidis
           053442]
          Length = 642

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/621 (46%), Positives = 390/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 376 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 555

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + Q
Sbjct: 556 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQ 615

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 616 ASRISGVTPAAVALLMVHLKR 636


>gi|332531223|ref|ZP_08407136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hylemonella gracilis ATCC 19624]
 gi|332039330|gb|EGI75743.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hylemonella gracilis ATCC 19624]
          Length = 679

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/666 (45%), Positives = 393/666 (59%), Gaps = 54/666 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FEVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAIATDEAGIQFRILNASKGPAVRATRAQADRILYKAAIRRRLENQPNLMLFQQAVD 126

Query: 126 GFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               E +     +   V Q     R  TVVLT GTFL G IHIG     AGR GD P+ S
Sbjct: 127 DLLVEGDGDGARVVGAVTQAGIAFRGRTVVLTAGTFLDGKIHIGLDNYAAGRAGDPPAVS 186

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEK----------QFADERLIP-FSFM 229
           L     +     GRLKTGTP RLDG+TI + + TE+          Q A+E  IP FSFM
Sbjct: 187 LSARLKELQLPQGRLKTGTPPRLDGRTIDFSQCTEQPGDGMPGAASQGANEGEIPVFSFM 246

Query: 230 T-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              ++  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF  +
Sbjct: 247 GLREMHPRQMPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFAGK 306

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T+  YPNGIST+LP +IQ   +R++ GLE   I+RPGYAIEYDY +P
Sbjct: 307 DSHQIFLEPEGLTTNEYYPNGISTSLPFDIQLALVRSMRGLENAQILRPGYAIEYDYFDP 366

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R  +Y+
Sbjct: 367 RSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEAAWLPGRDQAYL 426

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R + F +  
Sbjct: 427 GVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEIGRRLGLVDDARWEAFNRKR 486

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDA 525
              +     LKS  +  + L +              Y   + L  P      L S+  D 
Sbjct: 487 DAVSRETERLKSTWVNPRILPAAEAERVLGVGIEHEYHLFDLLRRPGVKYAELMSM--DG 544

Query: 526 RKFSS--------------------------------LVIERLQIESSYAAYTGRQMIEA 553
            K++S                                 V+++++I + YA Y  RQ  E 
Sbjct: 545 GKYASPASAARNELPVAGAAAVTLTGVSRETLGDLYEPVVDQIEIAAKYAGYIDRQRDEV 604

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +     E+  +P D DY S+ ALS E ++KL   +P  L QAS+I G+TPA ++LLLI++
Sbjct: 605 ERAAHYEQLQLPADLDYMSVSALSIEARQKLQKHRPETLGQASRISGITPATISLLLIHL 664

Query: 614 KKNTVK 619
           +K+  K
Sbjct: 665 RKSGFK 670


>gi|297519012|ref|ZP_06937398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli OP50]
          Length = 583

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/576 (46%), Positives = 368/576 (63%), Gaps = 5/576 (0%)

Query: 46  CNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
           CNPAIGG+GKGHLV+E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR 
Sbjct: 1   CNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQ 60

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IHIG
Sbjct: 61  AVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG 120

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                 GR GD PS  L     +     GRLKTGTP R+D +TI +    +Q  D  +  
Sbjct: 121 LDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPV 180

Query: 226 FSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           FSFM +   + +Q+ C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++R
Sbjct: 181 FSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMR 240

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD
Sbjct: 241 FADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYD 300

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           + +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+
Sbjct: 301 FFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARS 360

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF
Sbjct: 361 QAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARF 420

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSI 521
            + ++     R  LKS  +T    ++  ++        +  +  + L  P+ + + L ++
Sbjct: 421 NEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL 480

Query: 522 CPDARKFSS-LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
            P A   +     E+++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+
Sbjct: 481 TPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEV 540

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             KL+  KP ++ QAS+I G+TPAA+++LL+++KK 
Sbjct: 541 IAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQ 576


>gi|312128798|ref|YP_003993672.1| glucose inhibited division protein a [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778817|gb|ADQ08303.1| glucose inhibited division protein A [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 628

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/616 (45%), Positives = 387/616 (62%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M++ + SQENLD+ Q EV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKKVLESQENLDIRQAEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  +
Sbjct: 128 EVLVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGETVFDSGPDGMHPARYLTEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T 
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIEQVPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD 
Sbjct: 248 TTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 308 MYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G I    Q+R+ K++Q+   +    + +K+ 
Sbjct: 428 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLIS---QQRYEKFLQKKKMIEDEINRVKNT 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+      +  +  K      T     + L  P+ S ++L  I P        V + ++I
Sbjct: 485 VIAPSEKVNKLLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+   ++ K  E + IP+  DYS +  LS E K+KLS ++P ++ QAS+I
Sbjct: 545 EIKYEGYIKKQLERIEQFKKLENKKIPEWVDYSKIIGLSTEAKQKLSQIRPASIGQASRI 604

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 605 SGVSPADISVLLIWLE 620


>gi|41058562|gb|AAR99263.1| glucose-inhibited division protein A [Candidatus Blochmannia
           ocreatus]
          Length = 624

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/614 (46%), Positives = 389/614 (63%), Gaps = 9/614 (1%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGGHAG EAA  +A++  +T LITH    +G MSCNPAIGG+GKGHLV+EIDA+ G+M 
Sbjct: 1   IGGGHAGTEAALASARMKCNTLLITHNIDMLGQMSCNPAIGGIGKGHLVKEIDAMGGVMA 60

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
              D +GIQFR+LN  KG AVR  R QAD+ LYR  ++  +  QE L +IQG V      
Sbjct: 61  YAIDRSGIQFRILNNTKGAAVRATRAQADKILYRQIIRNILEYQEFLHIIQGSVEDLIIV 120

Query: 131 KN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK- 188
            N II  +  +        +VVLTTGTFL G IHIG      GR GD+ S++L +  +K 
Sbjct: 121 DNKIIGVVAPRIGVKFYARSVVLTTGTFLNGKIHIGMKSFSGGRSGDTESSTLLSDRLKN 180

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNL 247
             F  GRLKTGT  R+  + I +D    Q++D+ +  FSF+  +  +  Q+ C IT TN 
Sbjct: 181 LSFRIGRLKTGTSPRIHSRNINFDILNIQYSDDPVPVFSFIGSETQHPAQVPCYITHTNH 240

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           ETH I+  N+  S IY+G ++   PRYCPSIEDKI+RF +RN HQ+FLEPEGL+T  VY 
Sbjct: 241 ETHEIVKSNLHQSPIYTGLVQGKSPRYCPSIEDKIIRFSDRNSHQVFLEPEGLSTPEVYL 300

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIST+LP ++Q + I++I GLE  NI RPGYAIEYD+ +P++L  TLE+K I GLF +G
Sbjct: 301 NGISTSLPFDVQKKIIKSIKGLENANITRPGYAIEYDFFDPRDLKLTLESKLIVGLFFSG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL+AGIN+AR +   +     R  +Y+GV++DDL + G  EPYRMF
Sbjct: 361 QINGTTGYEEAAAQGLLAGINAARFAKNKEGWYPRRDQAYLGVLVDDLCTHGTEEPYRMF 420

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           T+RAEYR+SLR DNAD RLT I   LG I +   K+F    +     R  L+ + +   +
Sbjct: 421 TARAEYRLSLREDNADLRLTEIARNLGLINDIWWKKFCMKKESIEKERQRLRGIYIFPCS 480

Query: 488 LSSTSI-SFKQDGKTR--TAYEFLSYPDFS---IQNLFSICPDARKFSSLVIERLQIESS 541
              T + +F +   TR     E L  P+     +  L +  P        V+E+++I+  
Sbjct: 481 PEITKLNNFLKSPLTREINGEELLRRPEIDYIKLSRLNTFFPSILTIDKKVLEQIEIQIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E  +  F E  L+P D D++S+  LS E+ EKL+  +P+++ QAS+I G+
Sbjct: 541 YEGYIHRQTEEIAKHIFNESVLLPADIDFNSIFGLSKEVVEKLNNCRPYSVGQASRISGV 600

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ LL+++KK
Sbjct: 601 TPAAISNLLVWLKK 614


>gi|195123765|ref|XP_002006373.1| GI21007 [Drosophila mojavensis]
 gi|193911441|gb|EDW10308.1| GI21007 [Drosophila mojavensis]
          Length = 663

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/633 (44%), Positives = 417/633 (65%), Gaps = 28/633 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+REIDAL
Sbjct: 27  YDVVVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREIDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL +    V 
Sbjct: 87  DGVCARCCDRSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQQELFSMPNLQIRAASVD 146

Query: 126 GFNTEKNIISS-------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               + +  +S       +++++  ++R  +VVLTTGTFLR  I+IG    PAGR+GD P
Sbjct: 147 NLQIDADESTSNGTRCNGVLLENGELVRSHSVVLTTGTFLRAHINIGLEVRPAGRIGDQP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
           + +L  +  +  F  GRLKTGTP R+   ++ + + E+  AD+  +PFSFM   +     
Sbjct: 207 AKALGEALNRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEADDPPMPFSFMNRDVWLPAK 266

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T    + I+ +N+  +   + +I   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQMHCYLTYTTPRVNEIVRDNLHVNRHVTEEIT--GPRYCPSIESKVLRFGARV-HQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ ++YP GIS  LP   Q + +R I GLEK  +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLIYPQGISCTLPHPQQIELVRAIKGLEKAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMID 413
           ETK+++GLF AGQ+NGTTGYEEAAAQG++AG N+A ++   D   +  SRT+ YIGV+ID
Sbjct: 384 ETKRVTGLFFAGQLNGTTGYEEAAAQGIIAGANAAGRTVHQDGRQLNISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E+R + F +   E+  
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTRKGHEFGLVSEQRYEHFQQ--TEHRL 501

Query: 474 LRSL--LKSLVLTSKNLSSTSISFKQDGKT--RTAYEFLSYP--DFSIQNLFSICPDARK 527
            R +  L+SL   S N    ++   Q   +  ++A++ LS P  + S++ L  +CP    
Sbjct: 502 KRGIEALRSLQKHS-NYWRQALGLPQSKASIQKSAFDMLSVPAENISVKQLIELCPTELG 560

Query: 528 F---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEK 583
           +      +  RL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++K
Sbjct: 561 WLRADDELATRLKIEALYSFFVDEQQRDVEDVRREERLCIPSDIDYFSKSLSLSNEERQK 620

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           L++++P  +  AS+I+G+TP+ +  LL Y+KK+
Sbjct: 621 LTLIQPQTIAAASRIQGVTPSTILRLLKYVKKS 653


>gi|153803600|ref|ZP_01958186.1| glucose inhibited division protein A [Vibrio cholerae MZO-3]
 gi|124120865|gb|EAY39608.1| glucose inhibited division protein A [Vibrio cholerae MZO-3]
          Length = 631

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 384/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQMQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ +   L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYDLLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|218885655|ref|YP_002434976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756609|gb|ACL07508.1| glucose inhibited division protein A [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 633

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/613 (44%), Positives = 371/613 (60%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 11  FDCIVVGAGHAGCEAAMASARLGHPTLLLTSNADRIGHLSCNPAIGGLAKGHMVKEIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LNV KGPAVR  R Q DR+ Y  A++R++ +Q+NL V Q    
Sbjct: 71  GGMMGLWADEAGIQFRTLNVSKGPAVRATRAQIDRDAYLHAVRRDVFAQDNLWVWQDTAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +        R  TV+LTTGTFL G+IH+G    P GR+GD+P+  L  S
Sbjct: 131 AILAEQGRAAGVRTGLGQEFRARTVLLTTGTFLCGLIHVGLTNFPGGRLGDAPAVGLSAS 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E+Q  DE   PFSF    +   Q+ C +T T
Sbjct: 191 LRTHGLELGRLKTGTTPRLLRASIDFSVMEEQPGDEPPRPFSFRGPGVRLPQVPCYMTWT 250

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I   G RYCPSIEDK+ RF +R  HQIF+EPEGL +   
Sbjct: 251 NERTHAAIRAGFDRSPMFTGVITGTGARYCPSIEDKVARFPDRERHQIFVEPEGLTSPEC 310

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP ++Q   I TIPGLE   I+RPGYAIEYDY +P +L PTLETK + GL+L
Sbjct: 311 YPNGIPTSLPLDVQKAMIATIPGLENAQIVRPGYAIEYDYADPIQLHPTLETKTLPGLYL 370

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N++     L      R  +Y+ V++DDL +KG  EPYR
Sbjct: 371 AGQINGTSGYEEAAAQGLWAALNASCALRGLPPFLPGRDAAYMAVLVDDLVTKGTREPYR 430

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           MFTSRAE+R+ LR +NAD RLTP+G  LG + +     F A++    + +  L +  V  
Sbjct: 431 MFTSRAEHRLLLRENNADARLTPLGRDLGLVDDGHWAVFRARHDALADLMTELEQRRVTP 490

Query: 485 SKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
                +      +   TR     E L  P  S++ L +  P+A   +  V E  +    Y
Sbjct: 491 DAATRAVFADLGEAVPTRAVSLAELLRRPTMSLERLRAFWPEATDHAPEVREEAETIIRY 550

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ    +    +E + +P+  DY+++  L+ E+ EKL+ ++P  + QA++I G+T
Sbjct: 551 SGYLARQEELVERAARQESQPLPEGLDYTAVAGLTREIVEKLTRVQPRTMGQAARISGVT 610

Query: 603 PAALNLLLIYIKK 615
           PAAL  + I+++K
Sbjct: 611 PAALTCIEIHLRK 623


>gi|327485243|gb|AEA79650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae LMA3894-4]
          Length = 631

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 385/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|205831541|sp|A9M3R4|MNMG_NEIM0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 628

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/621 (46%), Positives = 390/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|320103472|ref|YP_004179063.1| glucose inhibited division protein A [Isosphaera pallida ATCC
           43644]
 gi|319750754|gb|ADV62514.1| glucose inhibited division protein A [Isosphaera pallida ATCC
           43644]
          Length = 619

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/613 (45%), Positives = 377/613 (61%), Gaps = 18/613 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAA  AA++G  TAL+T     +G MSCNPAIGG+GKG + REIDAL
Sbjct: 6   FDVVVIGGGHAGIEAALAAARMGCRTALLTLNVDAVGQMSCNPAIGGVGKGQIAREIDAL 65

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + DA+ IQ+R+LN  KGPA+ GPR Q D++LY++  +  +  QE L + Q  + 
Sbjct: 66  GGAMGLITDASAIQYRLLNRGKGPAMHGPRAQCDKKLYQITAKETVERQERLTLRQESIE 125

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  +  ++ +   +     VVLTTGTFL+ ++H G+LK   GR GD  +  L +S
Sbjct: 126 AVRVEQGKVVGVLCRGGVVYEARAVVLTTGTFLQALMHTGELKTAGGRAGDPAAQGLSSS 185

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 +  R KTGTP RL+G+TI + + E+Q  D+    FS +T  +   Q+ C +T T
Sbjct: 186 LRALGIELRRFKTGTPPRLNGRTINFRRLEEQPGDDDPTFFSSLTTALNGPQMVCHLTAT 245

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H +I  N+  + +Y G I S GPRYCPSIEDK+VRFG+R+ HQIFLEPEG  T   
Sbjct: 246 NEQVHDLIRANLHRAPMYCGQIDSRGPRYCPSIEDKVVRFGDRSSHQIFLEPEGRRTLEY 305

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q   I  IPGLE   I+R GYA+EYDY  P +L  +LE K+  GLFL
Sbjct: 306 YCNGISTSLPRDVQEAIIPLIPGLEHAEIMRFGYAVEYDYAPPTQLRASLEVKEWPGLFL 365

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAGIN+A      +     R+ +YIGV+IDDL +KGV EPYR
Sbjct: 366 AGQINGTTGYEEAAAQGLVAGINAALSVQNREPFILDRSQAYIGVLIDDLVTKGVDEPYR 425

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R++LR DNAD RLT +G +LG + E R + F + ++    L   L+      
Sbjct: 426 MFTSRAEFRLALRYDNADLRLTELGRRLGLVDELRWRTFQERVERMERLGERLR------ 479

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--ARKFSSLVIERLQIESSYA 543
                   +FK DG+  T    L  P  + + L ++ P+  A       +     E  Y 
Sbjct: 480 --------TFKVDGE--TLERRLRRPTTTWEELRALDPELPAEASDPSSVRHWLAELKYD 529

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  + ++ +  E + IP+D DY +L  L +E +EK +  +P    QA +I G+ P
Sbjct: 530 GYLVRQRDQVEKFRRWEDKPIPEDLDYDALTQLRHEAREKFAATRPVTFGQAGRISGVAP 589

Query: 604 AALNLLLIYIKKN 616
           A L +LL+Y+KK 
Sbjct: 590 ADLAVLLVYLKKG 602


>gi|197245367|ref|NP_001127786.1| mitochondrial translation optimization 1 homolog [Nasonia
           vitripennis]
          Length = 662

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/623 (44%), Positives = 399/623 (64%), Gaps = 14/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA A AA++GA T L+THK STIG MSCNP+ GG+GKG+L+RE+DAL
Sbjct: 38  FDVIVIGGGHAGTEACAAAARMGAKTLLVTHKKSTIGEMSCNPSFGGIGKGNLMREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D +G+ +++LN +KGPAV G R Q DR LY+  +Q E+ +   L +I+  V 
Sbjct: 98  DGICCRICDISGVHYKILNKRKGPAVWGLRAQIDRTLYKKNLQAELFNYPCLQIIESSVE 157

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + +      ++++D + +   +VV+TTGTFL+G IHIG    PAGR+ D PS +L 
Sbjct: 158 DLLLHGDSPKCCGVILKDGTKVLSDSVVITTGTFLKGEIHIGLETRPAGRLNDEPSIALA 217

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQIEC 240
           ++  +  F  GRLKTGTP RL+  TI + K  +Q  DE   PFSFM+D +     +Q+ C
Sbjct: 218 DTLDRLGFRIGRLKTGTPPRLEKSTIDFSKCIRQEPDEIPEPFSFMSDSVWLPPEKQLCC 277

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T     +I+ +N+  +   + D+K  GPRYCPSIE K++RF + + HQ++LEPEGL
Sbjct: 278 FLTHTGQGVLKIVKDNLHCNIHVTQDVK--GPRYCPSIESKVLRFPQLS-HQVWLEPEGL 334

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++ ++YP G+S  LP + Q + I+ IPGLE   +++PGY + YDY++P+EL   LETKKI
Sbjct: 335 DSSLIYPAGLSCTLPADQQEELIKHIPGLENAKMVKPGYGVAYDYVDPRELTSALETKKI 394

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQG+VAG+N+A K      +  SRT+ YIGV+IDDLT+ G 
Sbjct: 395 PGLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVFNKPPLIISRTEGYIGVLIDDLTTGGT 454

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLRPDNAD RLT  G  +GC+ E R ++    +Q  +     L +
Sbjct: 455 TEPYRMFTSRAEFRVSLRPDNADERLTQKGYTVGCVSEERWRKTESLLQNVHECLEALNN 514

Query: 481 LVLTSKNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERL 536
              T KN     I  + + +   +TA+  L   D ++ +L    P+      +  + +R+
Sbjct: 515 TSKTHKNWQK-CIRLRDNKQNLPKTAFALLQNEDVTLDDLAPHVPELLYLEKNPKLSQRV 573

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSILKPFNLLQA 595
           +IE++Y      Q  E +EI+  E   IP + D++S    +S E +EKL+  +P  +  A
Sbjct: 574 KIEATYTHAVEEQKREVEEIRKNESMAIPSNIDWNSQSLNISVEDREKLADAQPQTIAAA 633

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
             I G+TPAA+  L  ++K N +
Sbjct: 634 YNIAGVTPAAVVKLYYHVKHNKI 656


>gi|219681946|ref|YP_002468330.1| glucose-inhibited division protein A [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254811507|sp|B8D6S0|MNMG_BUCAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219621679|gb|ACL29835.1| glucose-inhibited division protein A [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086329|gb|ADP66410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311086903|gb|ADP66983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 628

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/622 (46%), Positives = 394/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV+EID
Sbjct: 5   RNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +++ E
Sbjct: 65  ALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLILEAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +  L 
Sbjct: 125 VKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSAIDLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   + +QI C +
Sbjct: 185 VRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQIPCYL 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPEGL++
Sbjct: 245 THTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPEGLSS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K I G
Sbjct: 305 IKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESKLIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++G  E
Sbjct: 365 LFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLL 478
           PYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +     E N L+   
Sbjct: 425 PYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRLKKNK 484

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
            S +    ++     +     K  +  E L  P    Q+L S+         L  I +++
Sbjct: 485 ISPISPDADILKKLYNINLI-KEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIGQIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ QAS+
Sbjct: 544 NEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TPAA+++LLI++KK + K
Sbjct: 604 ISGITPAAISILLIHLKKESYK 625


>gi|311087494|gb|ADP67573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 628

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/622 (46%), Positives = 394/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV+EID
Sbjct: 5   RNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +++ E
Sbjct: 65  ALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLILEAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +  L 
Sbjct: 125 VKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSAIDLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   + +QI C +
Sbjct: 185 VRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQIPCYL 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPEGL++
Sbjct: 245 THTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPEGLSS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K I G
Sbjct: 305 IKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESKLIKG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++G  E
Sbjct: 365 LFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLL 478
           PYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +     E N L+   
Sbjct: 425 PYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRLKKNK 484

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQ 537
            S +    ++     +     K  +  E L  P    Q+L S+         L  I +++
Sbjct: 485 ISPISPDADILKKLYNINLI-KEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIGQIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ QAS+
Sbjct: 544 NEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNNYKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TPAA+++LLI++KK + K
Sbjct: 604 ISGVTPAAISILLIHLKKESYK 625


>gi|71891794|ref|YP_277523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123641256|sp|Q494F8|MNMG_BLOPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71795900|gb|AAZ40651.1| glucose-inhibited division protein A [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 632

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 298/621 (47%), Positives = 391/621 (62%), Gaps = 15/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++  +T LITH   T+G MSCNPA+GG+GKGHLV+EIDA+
Sbjct: 7   FDVIVVGGGHAGTEAALASARMQCNTLLITHNIDTLGQMSCNPAVGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN  KG AVR  R QAD+ LYR A++  +  Q+ L VIQ  V 
Sbjct: 67  GGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQADKILYRQAIRSILEYQKFLLVIQASVE 126

Query: 126 GFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 N I  ++     M    ++VVLTTGTFL G IHIG      GR GDS S+SL +
Sbjct: 127 DLIVSGNKIVGVITPKLGMKFSGTSVVLTTGTFLNGKIHIGMNNFRGGRSGDSESSSLLS 186

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
             +K   F   RLKTGT  R+  K I +     Q++D+ +  FSF+ + K+   Q+ C I
Sbjct: 187 ERLKELSFQISRLKTGTSPRVHTKGINFGSLRAQYSDDPIPVFSFIGSTKLHPTQVPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH I+  N+  S +Y+G IK   PRYCPSIEDKI RF +RN HQIFLEPEGL T
Sbjct: 247 THTNNKTHEIVRSNLYQSPMYTGLIKGIAPRYCPSIEDKITRFSDRNAHQIFLEPEGLTT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NGIST+LP  +Q Q I++I GLE   IIRPGYAIEYD+ +P++L  TLE+K ISG
Sbjct: 307 PEVYLNGISTSLPFCVQMQMIKSIQGLENACIIRPGYAIEYDFFDPRDLKLTLESKIISG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAAAQGL+AGIN+AR S   +     R  +Y+GV++DDL + G  E
Sbjct: 367 LFFSGQINGTTGYEEAAAQGLLAGINAARFSKNKEGWYPRRDQAYLGVLVDDLCTHGTEE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK--- 479
           PYRMFTSRAEYR+SLR DNAD RLT I  +LG I E R K F    +     R  L+   
Sbjct: 427 PYRMFTSRAEYRLSLREDNADLRLTEIARQLGLIDESRWKAFCCKKENIEKERQRLRNTY 486

Query: 480 -----SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                S V    N   T ++ + +G+       ++Y   S  + FS     R+    V E
Sbjct: 487 IFPYSSDVAQLNNFLKTPLTHETNGEDLLRRPEINYKKLSQLSTFSPSILDRQ----VFE 542

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y   Q  E K   + E  L+P D D++ +  LS E+ +KL+  KP+++ Q
Sbjct: 543 QIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDIDFNIVSGLSQEVIDKLNNYKPYSIGQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++ LL+++KK
Sbjct: 603 ASRISGITPAAISNLLVWLKK 623


>gi|302872909|ref|YP_003841545.1| glucose inhibited division protein A [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575768|gb|ADL43559.1| glucose inhibited division protein A [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 627

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/616 (45%), Positives = 384/616 (62%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + SQENLDV QGEV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLESQENLDVRQGEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  + +   ++     VVL TGTFL G I IG+     G  G  P+  L  +
Sbjct: 128 EVLVRDGRVKGVKITTGAIFLAKAVVLATGTFLGGRIIIGETVYDGGPDGMHPARYLTEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  K++ + K + Q  D R +PFSF   D     Q+ C +T 
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRKSLDFSKMQIQPGDLRPLPFSFENEDSFNIEQVPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD 
Sbjct: 248 TTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGLDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 308 MYVQGMSTSLPEDVQIKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G +     +R+ K++Q+   +    + +K+ 
Sbjct: 428 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLVS---SQRYEKFLQKKKMIEDEINRVKNT 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+      +  +  K      T     + L  P+ S ++L  I P        V + ++I
Sbjct: 485 VIAPSEKVNKLLLGKGSSPITTGVKLSDLLKRPELSYEDLKDIDPARPDLPWYVKDEVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+ + ++ K  E + IP   DYS +  LS E K+KLS ++P ++ QAS+I
Sbjct: 545 EIKYEGYIKKQLAQVEQFKKLENKKIPDWVDYSQILGLSTEAKQKLSQIRPASIGQASRI 604

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 605 SGVSPADISVLLIWLE 620


>gi|325267703|ref|ZP_08134354.1| glucose inhibited division protein A [Kingella denitrificans ATCC
           33394]
 gi|324980827|gb|EGC16488.1| glucose inhibited division protein A [Kingella denitrificans ATCC
           33394]
          Length = 650

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/619 (46%), Positives = 394/619 (63%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 27  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 86

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 87  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQS 146

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 147 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 206

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 207 GCLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 266

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 267 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 326

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 327 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 386

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 387 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 446

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 447 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 506

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++    P+ R     VIE++
Sbjct: 507 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYTALMTLEGAQPECR-LPENVIEQV 565

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P++ DYS +  LS E+++KL+  KP  + QAS
Sbjct: 566 EIQVKYQGYIDRQNEEIDSRRDLETLRLPENIDYSKVKGLSAEVQQKLNQHKPETVGQAS 625

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+ LL++++K+
Sbjct: 626 RISGVTPAAVALLMVHLKR 644


>gi|188587518|ref|YP_001919063.1| glucose inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205831540|sp|B2A469|MNMG_NATTJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|179352205|gb|ACB86475.1| glucose inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 644

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/614 (44%), Positives = 390/614 (63%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GHAGCEAA   A++GA T L+T     I  M CNPAIGG  K H+VRE+DA
Sbjct: 7   NYDLIVVGAGHAGCEAALAGARIGAKTLLLTLNLDQIALMPCNPAIGGPAKSHIVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQFR+LN +KGPAV+  R QAD+  Y+  M+  + ++ENL + Q  V
Sbjct: 67  LGGEMGKNIDDTAIQFRMLNTRKGPAVQALRAQADKIKYQERMKYILENEENLLLKQETV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N I  +V +D +   C  +V+T+GT+L+G I +G +    G  G   +  L  
Sbjct: 127 NQLMIEDNQIKGVVTKDGTYYYCEQLVITSGTYLKGRIIVGDVDYSGGPNGQQAAYGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F +      R KTGTPAR+  K++ +D+ E Q  D+    FSF       +Q+ C +T 
Sbjct: 187 DFKQHGISLMRFKTGTPARVYRKSLNFDEMEIQHGDDYPWRFSFYHSSERLKQLPCYLTF 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH+II +++  S +YSG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEGLNT  
Sbjct: 247 TNYETHKIINDSLSRSPLYSGRIEGTGPRYCPSIEDKIVRFPDKSRHQLFLEPEGLNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LP ++Q + +RTIPGLE+V I+RPGYAIEYD I+P +L  TLE K+ISGLF
Sbjct: 307 YYVQGMSTSLPLDVQERMLRTIPGLEEVEIMRPGYAIEYDCIDPTQLELTLEHKQISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A+K    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQINGTSGYEEAAGQGILAGINAAQKIQGKEPVIIKRSQGYIGVLIDDLVTKGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G I E   ++F + +++    +  LKS+ LT
Sbjct: 427 RMLTSRAEYRLILRQDNADLRLTELGYQVGLIKEGNYQKFKEKLEKIESEKERLKSIKLT 486

Query: 485 -SKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +KN+ +        G  K  T +  L  P+ S + L             V E+++I+  
Sbjct: 487 PNKNVQNFMEEHNTSGLKKPTTLFHILKRPEISYEALEYFDETRPDLPLEVTEQIEIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  E RLIP D DYS +  LS E +EKL   +P ++ QA++I G+
Sbjct: 547 YEGYIDKQVEQVQRFEKLEARLIPDDIDYSQISGLSIEAREKLQTYRPRSVGQANRISGI 606

Query: 602 TPAALNLLLIYIKK 615
            P+ +++L++Y+++
Sbjct: 607 DPSDISVLMVYLEQ 620


>gi|294505874|ref|YP_003569932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Salinibacter ruber M8]
 gi|294342202|emb|CBH22980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Salinibacter ruber M8]
          Length = 664

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/629 (44%), Positives = 394/629 (62%), Gaps = 18/629 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGH+G EAAA AA +GA T LIT K + IG MSCNPAIGG+GKGH+ REIDAL
Sbjct: 8   HDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHIAREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MGR  D AGIQFR+LN  KGPAV GPR Q  R  Y  A+++E+ + +NL +    V 
Sbjct: 68  GGIMGRATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLKMRSDMVK 127

Query: 126 GFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              T+     ++ +            V+LTTGTF  GVIH+G+     GR+G+S S+ + 
Sbjct: 128 EILTDDAGETVTGVRTNLGKEFCAPCVILTTGTFSNGVIHVGEQNFGGGRIGESASHGIT 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECG 241
                  F++GRLKTGTP R+DG++I +   EKQ  D     FSF+TD +     Q+ C 
Sbjct: 188 GCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSVEAQLSCW 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH ++      S +++G + + GPRYCPSIEDKI RF E++ HQ+F+EPEG +
Sbjct: 248 LTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLFIEPEGRD 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NG S++LPEE+Q + +RT+PG+E+ ++ RPGYAIEYD+  P ++  +LETK + 
Sbjct: 308 THEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYSLETKYVD 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+ +K  + D I   R+++YIGV+IDDL +KG  
Sbjct: 368 GLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDDLVAKGTD 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+RI LR DNAD RLT +G KLG   + R  R  +  +  +  R  L   
Sbjct: 428 EPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVTRETLSDT 487

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER---- 535
            ++ + +     S+      + R   E    P+   ++L      A  +  +V E     
Sbjct: 488 TVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLR---HAGIYDEVVTEAPGML 544

Query: 536 -----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
                ++I+  Y  Y  RQ    +E++ +E+  IP DFDY +L  +S E ++KLS ++P 
Sbjct: 545 SAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQKLSKVEPD 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           NL QAS++ G+  + +++L++ +K   V+
Sbjct: 605 NLGQASRVPGVRASDISVLMVLLKNEGVE 633


>gi|125974849|ref|YP_001038759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium thermocellum ATCC 27405]
 gi|256003894|ref|ZP_05428881.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           2360]
 gi|281418696|ref|ZP_06249715.1| glucose inhibited division protein A [Clostridium thermocellum
           JW20]
 gi|166222929|sp|A3DHY7|MNMG_CLOTH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125715074|gb|ABN53566.1| glucose inhibited division protein A [Clostridium thermocellum ATCC
           27405]
 gi|255992232|gb|EEU02327.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           2360]
 gi|281407780|gb|EFB38039.1| glucose inhibited division protein A [Clostridium thermocellum
           JW20]
 gi|316941971|gb|ADU76005.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           1313]
          Length = 630

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/622 (45%), Positives = 391/622 (62%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA  AA+LG  T +      +I +M CNP IGG  KGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGCEAALAAARLGVKTVVFAINLDSIANMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLDV Q E+ 
Sbjct: 68  GGEMGKNADKTFIQSKILNSAKGPAVYSLRAQVDRRSYQIEMKNTLEKQENLDVKQAEIV 127

Query: 126 GFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               +    K  +  +     ++ +   V+L TGT+L+G I IG +    G  G  P+N 
Sbjct: 128 EILYDEVEGKKTVRGVKTHTGAIYKSKVVILATGTYLKGKIIIGDVSYSGGPDGLFPANK 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +   +  R KTGTPAR++ ++I + K E+Q  DER++PFSF  ++I   Q+ C 
Sbjct: 188 LSDSLREMGIELMRFKTGTPARVNRRSIDFSKMEEQPGDERIVPFSFENEEIKKEQVSCY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETHRII EN+  S ++ G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP GLN
Sbjct: 248 LTYTNSETHRIIRENLHRSGLFGGLIEGIGPRYCPSIEDKVVRFSDKESHQVFVEPMGLN 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y  G+ST+LPE++Q + +RTIPGLE V+I+R  YAIEYD INP +L  +LE + + 
Sbjct: 308 TQEMYLQGMSTSLPEDVQIEMLRTIPGLENVSIMRNAYAIEYDCINPTQLKLSLELRDVE 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAAAQG++AGIN+ARK   L+ +   R+ +YIGV+IDD+ +KG  
Sbjct: 368 GLFTAGQINGTSGYEEAAAQGIIAGINAARKIKGLEPLILDRSQAYIGVLIDDIVTKGTN 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLK 479
           EPYRM TSRAEYR+ LR DNAD RLTPIG ++G I E R ++F   + + E    R    
Sbjct: 428 EPYRMMTSRAEYRLLLRQDNADLRLTPIGYEVGLISEERYRKFEEKRRLIEQEIERVKKT 487

Query: 480 SLVLTS------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           ++  T       K  +ST I        + A + L  P+     L  I  +    S  V 
Sbjct: 488 NIAPTEKVNEFLKKHNSTPIK----SGVKLA-DLLRRPELDYDTLAEIDENRPDLSFAVR 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQM + ++ K  E+R + KD +Y  +  L  E ++KL+ +KP ++ 
Sbjct: 543 EQVSISIKYEGYIKRQMQQVEQFKKLEERKLDKDINYDEIKGLRLEARQKLNKIKPESVG 602

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+Y+++
Sbjct: 603 QASRISGVSPADISVLLVYLEQ 624


>gi|320354723|ref|YP_004196062.1| glucose inhibited division protein A [Desulfobulbus propionicus DSM
           2032]
 gi|320123225|gb|ADW18771.1| glucose inhibited division protein A [Desulfobulbus propionicus DSM
           2032]
          Length = 627

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/630 (45%), Positives = 384/630 (60%), Gaps = 30/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+ VIG GHAGCEAA  AA++G ST +      TIG+MSCNPAIGGL KGHLV+EIDAL
Sbjct: 4   FDIAVIGAGHAGCEAALAAARMGCSTLVCVINADTIGAMSCNPAIGGLAKGHLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR LN  KGPAVR  R QADR LYRL M+  + +Q NL + Q  V 
Sbjct: 64  GGEMAKNIDATGIQFRRLNTSKGPAVRSSRAQADRLLYRLRMKHILENQPNLAIRQAVVD 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +  +R   +V+ TGTFL G+IH+G    PAGRMGD+PS  L   
Sbjct: 124 EILIENGRVVGLRTSLDECVRVRAIVVATGTFLNGLIHVGLKNFPAGRMGDAPSTKLAQW 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
           F    F  GR+KTGT  RLDG +I + +   Q++DE+   FSF +       Q  C IT 
Sbjct: 184 FASTGFTVGRMKTGTVPRLDGNSIDYSQLVAQYSDEQPALFSFSSHGAPPLVQRPCYITY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II ++I  S +Y+G I+  G RYCPSIEDK++RF E+  HQIFLEPEGL T  
Sbjct: 244 TNERTHDIIRQSIHQSPMYAGIIEGVGARYCPSIEDKVMRFPEKVRHQIFLEPEGLETIE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGI T+LP   Q + + +I GLE   IIRPGYAIEYDY++P+EL P+LETKKI GLF
Sbjct: 304 VYPNGIPTSLPLATQIEMVHSIQGLEHARIIRPGYAIEYDYVDPRELKPSLETKKIVGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL+A INS +     + +   R+ +Y+GV+IDDL + G  EPY
Sbjct: 364 LAGQINGTSGYEEAAGQGLMAAINSVQYVRGEEPVILDRSQAYLGVLIDDLVTLGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--- 481
           R+FTSRAEYR+ LR DNAD RL PIG ++G + E     + +++ +  ++  +L  L   
Sbjct: 424 RLFTSRAEYRLLLREDNADMRLRPIGHRIGLVDE---PTWHEFVHKKEYISRVLHYLHET 480

Query: 482 ----------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------PDA 525
                      L + N  + S       +  T  E L  P+  +  L  +       P  
Sbjct: 481 RIKPVPGINAFLAAHNAPALS-------QAMTLAELLRRPEIRLHMLAQMSRAVDSLPPF 533

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            + +    + ++++  Y  Y  RQ  +    K  E   +P    Y  LP LSNE+ EKL+
Sbjct: 534 PEEALAFHDEIELQIKYEGYIKRQEEQISRFKKLESIELPPGLVYKGLPGLSNEVVEKLT 593

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P +L QAS+I G+TPAAL++L +++K+
Sbjct: 594 RVQPRSLGQASRISGVTPAALSVLQVHLKR 623


>gi|268318296|ref|YP_003292015.1| glucose inhibited division protein A [Rhodothermus marinus DSM
           4252]
 gi|262335830|gb|ACY49627.1| glucose inhibited division protein A [Rhodothermus marinus DSM
           4252]
          Length = 644

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 294/629 (46%), Positives = 397/629 (63%), Gaps = 24/629 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+GGGHAG EAAA AA++GA T LIT    TIG MSCNPAIGG+GKGHLVREI
Sbjct: 17  DERYDVIVVGGGHAGAEAAAAAARMGARTLLITMSLETIGRMSCNPAIGGIGKGHLVREI 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+MGR+AD  GIQFR+LN  KGPAV GPR Q DR+ Y  A++ E+ S  NL +   
Sbjct: 77  DALGGIMGRMADQTGIQFRMLNRSKGPAVWGPRAQCDRKRYAEAVRHELESIPNLWMRAD 136

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +  Q         V+LT GTFL GVIH+G+ ++  GRMG+  +  L
Sbjct: 137 TVTEVLVEDRRVKGVRTQLGKTFYAPCVILTNGTFLNGVIHVGERQLGGGRMGERAATGL 196

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                +  F++GRLKTGTP R+DG+TI + + ++Q  D   +PFS+MTD++ +RQ+ C +
Sbjct: 197 TACLERLGFESGRLKTGTPPRIDGRTIDYSRLQEQPGDSEPLPFSYMTDRLPDRQLSCWL 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H I+      S +++G IK  GPRYCPSIEDKI RF ER+ H IFLEPEG +T
Sbjct: 257 TYTTPEVHAILRTGFDRSPMFTGRIKGRGPRYCPSIEDKIERFAERDRHPIFLEPEGWDT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG ST+LPEE+Q   +R IPGLE+V+++RPGYAIEYDY  P ++  +LETK + G
Sbjct: 317 YEVYVNGFSTSLPEEVQVAALRKIPGLERVHVLRPGYAIEYDYFPPYQIRYSLETKYVEG 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ +K    + +   R+++YIGV+IDDL +KG  E
Sbjct: 377 LFFAGQINGTTGYEEAAAQGLMAGINAVQKLRGAEPVVLRRSEAYIGVLIDDLVAKGTDE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+RI LR DNAD RLT +G +LG     R +R  K  +     R  L+   
Sbjct: 437 PYRMFTSRAEHRILLRQDNADLRLTELGYRLGLATRERYERMLKKKEAIARTRRALEETT 496

Query: 483 LTSKNLS------STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDAR 526
           +  + ++       TS   + +   R A      P  ++++L              P   
Sbjct: 497 VRPEQVNGYLERVGTSPIDRPERLVRLALR----PQVNLRDLLEATGLREQVVVPAPGME 552

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
               LV    +IE  Y  Y  R+    ++++  E   IP DFDY ++  +S E +EKLS 
Sbjct: 553 PVEMLV----EIELKYEGYMDRERELVEKMRELEDWRIPPDFDYEAVETISKEAREKLSK 608

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P NL QAS+I G+ PA +++L++ +++
Sbjct: 609 IRPENLGQASRISGVRPADISVLMVLLRR 637


>gi|332703832|ref|ZP_08423920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553981|gb|EGJ51025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 630

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/614 (43%), Positives = 380/614 (61%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + +IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 14  FALIVVGAGHAGCEAAMASARLGLPTLLLTINVDRIGHLSCNPAIGGLAKGHIVKEIDAL 73

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  AD AGIQFR+LN +KGPAVR  R Q DR  Y   +QR++ +Q+NL ++Q    
Sbjct: 74  GGRMGLWADQAGIQFRILNTRKGPAVRATRAQIDRREYMRVVQRDLFAQDNLWILQDMAE 133

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +    + +            V+LTTGTFL+G+IH+G +    GRMGD  S  L  +
Sbjct: 134 AVLVKNGRAAGVATSLGQRFASHAVLLTTGTFLQGLIHVGLMNYSGGRMGDPASVGLSKN 193

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E Q  D   +PFSF +  +   Q++C IT T
Sbjct: 194 LADLGLELGRLKTGTTPRLLKGSIDFSGLEPQPGDNPPLPFSFHSPGVVLPQVDCHITYT 253

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I E  + S +++G IK  G RYCPSIEDK+ RF ++  HQ+F+EPEGL++  V
Sbjct: 254 NERTHAAIREGFERSPMFTGIIKGTGARYCPSIEDKVARFPDKERHQVFIEPEGLDSPEV 313

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP+GI T+LP +IQ + I +IPGLE+  I+RPGYAIEYD++ P +L PTLETK + GL+L
Sbjct: 314 YPSGIPTSLPLDIQKRMIASIPGLEQAQIVRPGYAIEYDFVPPMQLQPTLETKVLPGLYL 373

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL A +N+       +     R  +Y+ VM+DDL +KG  EPYR
Sbjct: 374 AGQINGTSGYEEAAGQGLWAALNACCALRGQEPFLPGRDQAYLAVMVDDLVTKGTNEPYR 433

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           MFTSRAE+R+ LR  NAD RLT  G +LG + + +   F+    + + L  +L+S ++  
Sbjct: 434 MFTSRAEHRLLLREGNADARLTQAGRELGLVDDAQWATFSAKQTDISELMLILESYIIRP 493

Query: 484 --TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              ++++ +T ++    GK       L  P+ +I+ L   CP+  K++  V+   +    
Sbjct: 494 DAATRDILAT-MAATAPGKAVPLTAILRQPEVAIEALAPFCPELPKYAEGVLREAETRIK 552

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ       + +E+  +P D +Y+++P LS E  EKLS ++P  L QAS+I G+
Sbjct: 553 YEGYLKRQEELVLRSRRQEETALPYDTEYAAIPGLSREAVEKLSRVRPLTLGQASRISGI 612

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ L I++KK
Sbjct: 613 TPAAISCLEIHLKK 626


>gi|308509486|ref|XP_003116926.1| hypothetical protein CRE_02046 [Caenorhabditis remanei]
 gi|308241840|gb|EFO85792.1| hypothetical protein CRE_02046 [Caenorhabditis remanei]
          Length = 637

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 392/619 (63%), Gaps = 11/619 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCE+AA +A+ G+ T L+T   +TIG MSCNP+ GG+GKGHL+RE+DALD
Sbjct: 18  DVIVIGGGHAGCESAAASARCGSKTILVTQNKNTIGEMSCNPSFGGIGKGHLIREVDALD 77

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL  R+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S E L+V++GEVA 
Sbjct: 78  GLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKKHMQNEINSTERLEVVEGEVAE 137

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   +  + M ++++I    VV+TTGTFLR  I+ G    PAGR+G+  S+ L  SF
Sbjct: 138 LLVKNKKVVGVKMANDTIISTKCVVITTGTFLRAQIYQGMKVWPAGRIGEKSSDILSESF 197

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIECGIT 243
           ++  F+ GRL+TGTP RL   +I + K E    D++ IPFSF+T+ I  +   Q+   + 
Sbjct: 198 LQHGFELGRLRTGTPPRLMKDSIDFSKFEMVKPDQKPIPFSFLTENIWIKYEDQLPTYLG 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ET RI  EN+  +  Y    ++  PRYCPS E K++RF +   H++FLE EGL++ 
Sbjct: 258 HTNEETCRIGQENMHEN--YQVASETTSPRYCPSFESKVLRFPKLQ-HRLFLEHEGLDSP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YP G+S     E+Q +  R IPGLE V I +PGY ++YD++NPK+L  TLET+K+ G+
Sbjct: 315 HIYPQGMSMTFKPEVQKEIFRAIPGLENVEIFQPGYGVQYDFVNPKQLKKTLETQKVEGM 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAGIN++ ++     +  SRT++YIGV+IDDLTS G  EP
Sbjct: 375 FLAGQINGTTGYEEAAAQGVVAGINASARAQNEPAMEVSRTEAYIGVLIDDLTSLGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----RSLLK 479
           YRM TSRAE+R+ LRPDNAD RLT +G +   I + R   F+K     N L      +  
Sbjct: 435 YRMLTSRAEFRLHLRPDNADIRLTELGRRHNAISDERWSTFSKTRDALNDLTEKTEQMKM 494

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           S+V   + +   S + + +GK  +A+E +   D   ++L     D  K    ++ERL+IE
Sbjct: 495 SVVKWKRVIPKLSATTRNEGKVLSAFELVHRYDLGKEDLEMGLQDV-KVDEKILERLKIE 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y     R   + +EI  E    IP + D+S +  +S E  EKL   +P NL  A++I 
Sbjct: 554 GRYRMEHERMKAKKQEIDRESATEIPDNIDFSKMRGMSLECIEKLERARPRNLAAATRIS 613

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TP A+ +L+ Y+K   V
Sbjct: 614 GITPEAIVVLMRYLKSPAV 632


>gi|304313412|ref|YP_003813010.1| Glucose-inhibited division protein A [gamma proteobacterium HdN1]
 gi|301799145|emb|CBL47388.1| Glucose-inhibited division protein A [gamma proteobacterium HdN1]
          Length = 627

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/620 (46%), Positives = 394/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EID
Sbjct: 5   KHYDVIVIGGGHAGTEAALAAARMGCQTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M R AD AGIQFRVLN +KGPAVR  R QADR LY+ A+++ + +Q+NLD+ Q  
Sbjct: 65  ALGGVMARAADRAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRQTLENQDNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                   + +  +V       R  TVVLT GTFL G IHIG      GR GD PS +L 
Sbjct: 125 ADDLIVVGDQVQGVVTHSGIRFRSHTVVLTVGTFLGGKIHIGLESHAGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
           +   +      RLKTGTP R+D +++ +   ++Q  D      SFM +   + +QI C I
Sbjct: 185 HRLRELPLRVDRLKTGTPPRIDARSVDFSVMQEQPGDTPTPVMSFMGNLSDHPKQISCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++N HQ+FLEPEGL T
Sbjct: 245 THTNESTHEIIRSGLNRSPMYTGVIEGIGPRYCPSIEDKIHRFADKNQHQVFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP +IQ + + +I GLE  +I+RPGYAIEYDY +P++L P+L TK + G
Sbjct: 305 HELYPNGISTSLPFDIQLKLVHSIRGLEHAHILRPGYAIEYDYFDPRDLHPSLATKTLGG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG N+A            R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAAAQGLLAGANAALSVQGKAPWTPHRDQAYLGVLVDDLITMGTRE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        L+ + 
Sbjct: 425 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDTRWSAFCKKREAIARETERLRCIR 484

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           ++ ++L +  I+   +   +  Y   E L  P+    +L ++  DA +    V E+++I 
Sbjct: 485 ISPESLIAERINQHTEHAIQREYSLLELLKRPELGYADLGNLTGDAVE-DPAVAEQVEIN 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E   ++  E+  +P+ FD++ +  LSNE  +KL  +KP  + QAS+I 
Sbjct: 544 AKYEGYILRQKEEISRLRASEETRLPEGFDFTKVKGLSNEATQKLVAVKPATIGQASRIP 603

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+TPAA++LLLI++KK+  K
Sbjct: 604 GITPAAISLLLIHLKKSDSK 623


>gi|121730055|ref|ZP_01682464.1| glucose inhibited division protein A [Vibrio cholerae V52]
 gi|121628204|gb|EAX60727.1| glucose inhibited division protein A [Vibrio cholerae V52]
          Length = 631

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/626 (45%), Positives = 384/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  +   + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVCNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|328699225|ref|XP_003240872.1| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 2
           [Acyrthosiphon pisum]
          Length = 659

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/636 (43%), Positives = 417/636 (65%), Gaps = 23/636 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+GGGHAG EA + AA++GAST L+THK S++G MSCNP+ GG+GKGHL+REI
Sbjct: 28  SKQYDVIVVGGGHAGTEACSAAARMGASTLLVTHKKSSVGEMSCNPSFGGIGKGHLMREI 87

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQ 121
           DALDGL  ++ D +GI +++LN +KGPAV G R Q DR+LY++ MQ E+     NL++I+
Sbjct: 88  DALDGLCAKICDLSGIHYKILNRRKGPAVWGLRAQVDRKLYKMYMQAELFENTPNLNIIE 147

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V     +  N  + +++++ ++IR   V+LTTGTFL G ++ G    P GR+   PS 
Sbjct: 148 GSVDNILLDNNNQCTGVLLENGTLIRTKCVILTTGTFLNGEMYSGMTVKPGGRINSKPSI 207

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---Q 237
            L N+  +  F+TGR+KTGTP R++ ++I +     Q  D+   PFSFM + +  +   Q
Sbjct: 208 GLANTLKRLGFNTGRMKTGTPPRIEKQSINFTNLNYQSGDDLPTPFSFMNNSVWLKPEDQ 267

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I+  +T TN + H+I+++N+  +     ++K  GPRYCPS+E K ++F +R+ HQI+LE 
Sbjct: 268 IKSYLTYTNSKVHQIVIDNLSVNRHIKEEVK--GPRYCPSLESKSLKFRDRH-HQIWLEI 324

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +++VVYPNG+S  LPE++Q + IR+I GLE       GY +EYDY++P+EL+PTLET
Sbjct: 325 EGFDSNVVYPNGLSCTLPEDLQVKMIRSINGLENAQHYISGYGVEYDYVDPRELYPTLET 384

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN--KLDCICFSRTDSYIGVMIDDL 415
           KKI  LF AGQINGTTGYEEAAAQG++AGIN+    +  ++  +  SRT++YIGV++DDL
Sbjct: 385 KKIGHLFFAGQINGTTGYEEAAAQGILAGINAGASVSVKQIFFLTLSRTEAYIGVLVDDL 444

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T++G  EPYRMFT RAE+R+ LRPDNAD RLT  G  +GC+    + R+ + +   + L 
Sbjct: 445 TTQGTDEPYRMFTGRAEFRLHLRPDNADIRLTQKGYDIGCVS---KTRYDQTLSIRSSLE 501

Query: 476 SLLKSLVLTSKNL----SSTSISFKQDGKTRTAYEF--LSYPDFSIQNLFSICPD--ARK 527
             +K L   S+ +     S  +   ++ +T+TA+E   LS    +++ L  I PD    +
Sbjct: 502 EGIKLLTSVSQTMYKWKKSLGLKTSRNPETKTAFEILGLSNEGITLRQLEMILPDNFGGQ 561

Query: 528 FSSLVI-ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLS 585
           F    I ERL+IE+ Y A T  Q  + + ++ ++  L+PKD DY+    ++S E  EKLS
Sbjct: 562 FEDNRIRERLKIEALYQASTYDQQEDIERVEVDQSLLLPKDIDYTHTSLSISKEEIEKLS 621

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            ++P  +  A +I G+ P+ +  LL YIK   + ++
Sbjct: 622 YIQPQTIGAAGRIPGIKPSTVLRLLYYIKNQKINIS 657


>gi|332969561|gb|EGK08579.1| glucose inhibited division protein A [Kingella kingae ATCC 23330]
          Length = 640

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 397/619 (64%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 17  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NL++ Q  
Sbjct: 77  ALGGAMALATDMSGIQFRHLNASKGAAVRATRAQADRILYKAAIRHMLENQPNLELFQQA 136

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 137 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLNNYAGGRAGDPAAQSLG 196

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               + +   GRLKTGTP R+DG+TI + K  +Q  D  +  FS   +   + +QI C I
Sbjct: 197 GRLRELNLPQGRLKTGTPPRIDGRTIDFSKLTEQAGDTPVPVFSVRGNAAMHPQQISCWI 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 257 THTNEQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+R GYAIEYDY +P+ L  +LETK I+G
Sbjct: 317 NEYYPNGISTSLPFDIQIGLVRSMKGLENAHILRAGYAIEYDYFDPRNLKASLETKTIAG 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 377 LFFAGQINGTTGYEEAAAQGLLAGANAVQFIREQDPLLLRREQAYLGVLVDDLITKGVNE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E + + F    ++       L+   
Sbjct: 437 PYRMFTSRAEYRLQLREDNADMRLTELGYQIGLVSEEQWRAFDTKREQIEQEIQRLRGTW 496

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERL 536
            T + LS +    +  ++  +    ++ L  P+ +  NL ++ P+A   + L   V+E++
Sbjct: 497 YTPQKLSESEQMRVFGQKLSREANLHDLLRRPNLNYANLMTL-PNALPENPLPNNVVEQV 555

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E  E K  E   +P D DY+ +  LS E+++KL+  KP  L QAS
Sbjct: 556 EIQVKYQGYIDRQNDEIAERKDIETMKLPADIDYAKVKGLSAEVQQKLNAHKPETLGQAS 615

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I+G+TPA++ LL++++++
Sbjct: 616 RIQGITPASVALLMVHLRR 634


>gi|294789396|ref|ZP_06754633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Simonsiella muelleri ATCC 29453]
 gi|294482609|gb|EFG30299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Simonsiella muelleri ATCC 29453]
          Length = 628

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 289/621 (46%), Positives = 398/621 (64%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNPAIGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPAIGGIGKGHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY++A++  + +QENL++ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKVAIREMLENQENLELFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S +        +  +VVLT GTFL G IHIG      GR GD  + +L 
Sbjct: 125 VTDITLDGDRVSGVNTAMGLEFKARSVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKTLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D     FS   ++  + RQI C I
Sbjct: 185 TRLREMNLPQGRLKTGTPPRIDGRTIDFSQLTEQAGDTPTPIFSVRGNQAMHPRQISCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  ++ETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQLALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASMETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQFVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKS 480
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E++ + F    +  N  R +  LKS
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTELGYRIGLVSEQQWRDFG--TKRENIEREIQRLKS 482

Query: 481 LVLTSKNL--SSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIE 534
              T   L  +     F Q   +    ++ L  P+     L ++ P+A   S L   V+E
Sbjct: 483 TWYTPLKLDVAEQERVFGQKLAREANLHDLLRRPNLDYTKLMTL-PNALPESPLADDVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P++ DY+ +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNDEIDSRRDIETLRLPENIDYAKVKGLSAEVQQKLNKYKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|23100945|ref|NP_694412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanobacillus iheyensis HTE831]
 gi|38372364|sp|Q8EKU3|MNMG_OCEIH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|22779180|dbj|BAC15446.1| glucose-inhibited division protein A [Oceanobacillus iheyensis
           HTE831]
          Length = 629

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/624 (44%), Positives = 395/624 (63%), Gaps = 17/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG E+A  AA++GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVESAYAAARMGAKTLMLTLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D + IQ R+LN  KGPAV+  R QAD+ +Y   M+  + ++ENL + QG V
Sbjct: 67  LGGIMGKVIDKSYIQMRMLNTGKGPAVQALRAQADKPIYMKEMKHLMENEENLTIRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   ++ + ++     +V++TTGTF+RG + +G L+  +G      S  L  
Sbjct: 127 NELIVEDGICKGVITETHAAYYADSVIVTTGTFMRGKVLMGDLEYESGPNNQRVSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K  F+  R KTGTP R++  TI + KTE Q  D+    FS+ T +    QI C +T 
Sbjct: 187 DLEKHGFEITRFKTGTPPRVNSHTIDYSKTEIQPGDDNPKSFSYETTEQITDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +N++ S++YSG  +  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T+ 
Sbjct: 247 TNEFTHQVINDNLELSSMYSGMKRGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQH+ I+++PGLEK  I+R GYAIEYD + P +L+PTLETK++ GLF
Sbjct: 307 VYVQGLSTSLPESIQHEMIKSVPGLEKAEIMRAGYAIEYDAVVPTQLWPTLETKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+A KS   + I   R+ +YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGMNAAAKSLNKEPIILDRSQAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG   G I E R +RF +  Q+    +  L  +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDIGYDYGLITEERYQRFTEKKQQIEQEKKRLSKIII- 485

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K         ++ G +R      AY+ +  P+ S   +  +     + S  V E++ I+
Sbjct: 486 -KPTEDIQDIMEKAGASRLKEAIKAYDLMKRPELSYDIVDQMIESNLELSEEVKEQVAIQ 544

Query: 540 SSYAAYTGRQMIEAKE-----IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             Y  Y  +    AKE     +K E+K+ IP+D DY ++  ++ E  EKL  ++P ++ Q
Sbjct: 545 IKYEGYIKK----AKEQVDRMLKMEDKK-IPEDIDYDAINGIATEAVEKLKKVRPLSVGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++LL+YI++ ++
Sbjct: 600 ASRISGVNPADVSILLVYIEQGSI 623


>gi|190346857|gb|EDK39035.2| hypothetical protein PGUG_03133 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 703

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 32/646 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIGGGHAGCEAA  +A+ G  T LIT   S IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 55  HPVVVIGGGHAGCEAATGSARSGTPTTLITPDISKIGTASCNPSMGGVGKGTLLREVDAL 114

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  ++ D AGI F++LN  KG AV GPR Q DR +Y   MQ+ IL+  NL V++ EV 
Sbjct: 115 DGVASKITDKAGIHFKILNASKGAAVHGPRAQIDRSIYLKEMQKTILNYPNLTVLEAEVK 174

Query: 126 GF---NTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                + E N           I  +V+ D+ ++ CS VV+TTGTFL   IHIG    PAG
Sbjct: 175 DIIIEDVETNSSDFTGRKYGSIVGVVLGDSRVLSCSKVVVTTGTFLSAEIHIGLESFPAG 234

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  +F +  F  GRLKTGTP RL  +TI ++   +Q +D    P S+M+ K
Sbjct: 235 RMGENATFGLSKTFKEAGFRLGRLKTGTPPRLSSRTIRYEGLSEQKSDYPPAPMSYMSSK 294

Query: 233 I--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   ++ + C IT T  E H++I +N+  S      +K  GPRYCPSIE KI++F ++  
Sbjct: 295 VDLQDQLVSCHITFTTAEMHKLIADNLDKSIHIKETVK--GPRYCPSIESKIIKFPQKTS 352

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD+VYPNGIS  +P E+Q + ++ +PG E V +++PGY +EYD+++P+E
Sbjct: 353 HMVWLEPEGLDTDLVYPNGISCTMPHELQEKLVKLMPGCEDVKMVQPGYGVEYDFVDPRE 412

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+         +   R+D Y+GV
Sbjct: 413 LRQTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLSLAGKPPLIVQRSDGYLGV 472

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R K +   +  
Sbjct: 473 LVDDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLTEKGYLAGVVSEERYKHYKNEMNN 532

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA----YEFLSYPDFSIQNLFSICPD-- 524
           ++ ++S L+S+ L+    +  ++   +    RTA    ++ LSY D  ++ L    P   
Sbjct: 533 FDAIKSFLQSVSLSGARWAP-ALKGTESDVNRTAVVDGWKLLSYRDVDLELLMKSLPQIV 591

Query: 525 ---ARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL-- 576
                 F S+   ++ R+ +ES+Y  +  ++    +  K +E  L+PK+F Y++   L  
Sbjct: 592 GDLPPVFDSINPRLLNRIDVESTYEPWMKKEEAHLRAYKADENLLLPKNFVYNNEGNLKI 651

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L +
Sbjct: 652 SYEVCHLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQSQLAQ 697


>gi|193734233|gb|ACF19885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Kingella kingae]
          Length = 628

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/619 (46%), Positives = 397/619 (64%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NL++ Q  
Sbjct: 65  ALGGAMALATDMSGIQFRHLNASKGAAVRATRAQADRILYKAAIRHMLENQPNLELFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLNNYAGGRAGDPAAQSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               + +   GRLKTGTP R+DG+TI + K  +Q  D  +  FS   +   + +QI C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSKLTEQAGDTPVPVFSVRGNAAMHPQQISCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNEQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+R GYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 NEYYPNGISTSLPFDIQIGLVRSMKGLENAHILRAGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQFIREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E + + F    ++       L+   
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTELGYQIGLVSEEQWRAFDTKREQIEQEIQRLRGTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERL 536
            T + LS +    +  ++  +    ++ L  P+ +  NL ++ P+A   + L   V+E++
Sbjct: 485 YTPQKLSESEQMRVFGQKLSREANLHDLLRRPNLNYANLMTL-PNALPENPLPNNVVEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E  E K  E   +P D DY+ +  LS E+++KL+  KP  L QAS
Sbjct: 544 EIQVKYQGYIDRQNDEIAERKDIETMKLPADIDYAKVKGLSAEVQQKLNAHKPETLGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I+G+TPA++ LL++++++
Sbjct: 604 RIQGITPASVALLMVHLRR 622


>gi|225848083|ref|YP_002728246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643777|gb|ACN98827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 620

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/625 (46%), Positives = 390/625 (62%), Gaps = 28/625 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DV+V+GGGHAG EAA ++AKLGA TALIT   + IG M CNP+IGG+ KG +VRE+
Sbjct: 4   DTEFDVVVVGGGHAGIEAAIISAKLGAKTALITLDENKIGLMPCNPSIGGIAKGIVVREV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D  GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI+ 
Sbjct: 64  DALGGEMAKAIDQTGIQFKVLNTRKGPAVRSPRAQADKEEYRKYMVEKTHNTENLTVIED 123

Query: 123 EVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           EV        +N +  ++      I+  +VV+TTGTFL G+IHIG  + PAGRM + PS+
Sbjct: 124 EVVDIVLKPHQNEVEGVITDKGLKIKTKSVVITTGTFLNGLIHIGDKRFPAGRMEEKPSS 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------T 234
            L   + +  F+  R KTGTPARLD  TI +   E+   D     FSF T+         
Sbjct: 184 KLPEFYKRHGFELARFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWFKE 243

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             QI C IT T  ETHRII EN+  +A+Y G I   GPRYCPSIEDKIV+F  ++ H ++
Sbjct: 244 KDQIPCYITYTTPETHRIIRENLHRTALYGGAITGVGPRYCPSIEDKIVKFEGKDRHTVW 303

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPE  +   +YPNG+ST+LPEEIQ Q  R+IPGLE V +++P YAIEYD + P EL+PT
Sbjct: 304 LEPETRDGISIYPNGLSTSLPEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELYPT 363

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMID 413
           LETKKI GL+ AG  NGTTGYEEAA QG+VAGIN+A R   K +     R + YIGVMID
Sbjct: 364 LETKKIKGLYHAGNFNGTTGYEEAAGQGIVAGINAALRALGKDEPFIIGRDEGYIGVMID 423

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLT+KGV+EPYR+FTSR+EYR+ LR DNA  RL      +G + E          +EY F
Sbjct: 424 DLTTKGVIEPYRLFTSRSEYRLHLRQDNAILRLYQKAYNIGALTE----------EEYRF 473

Query: 474 LRSL---LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
           ++     +K+ + T KN        K + K  + + FL  P+ SI NL     +    S 
Sbjct: 474 VKQHEDEIKNWIETYKN-----TYIKDNDKKISVFTFLQKPEISIDNLKDYGIETPS-SD 527

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E ++I   Y  Y  R+    +++K+ +   IP+D DYS +  L+ E   KL+  KP 
Sbjct: 528 YIKEEVEINVKYDGYFERERKLNEKMKYLDSIKIPQDIDYSKVAGLTKEAVMKLTKAKPM 587

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L  A+++EG+TPAA+  ++++I+K
Sbjct: 588 TLGHAARLEGITPAAITAIMVHIEK 612


>gi|219871649|ref|YP_002476024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis SH0165]
 gi|219691853|gb|ACL33076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis SH0165]
          Length = 603

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/595 (46%), Positives = 367/595 (61%), Gaps = 5/595 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+ GLM    D AGIQFR LN  
Sbjct: 1   MGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAMGGLMATATDKAGIQFRTLNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV     E N     V +     +
Sbjct: 61  KGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFK 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +V+LT GTFL G IHIG      GR GD  +  L +     +    RLKTGTP RLD 
Sbjct: 121 AKSVILTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +TI +D   KQ  D+ L   SFM + +   RQI C IT TN +TH +I  ++  S +Y+G
Sbjct: 181 RTINFDVLAKQHGDDVLPVMSFMGSVEQHPRQIPCYITHTNEQTHDLIRNSLDRSPMYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL T  VYPNGIST+LP ++Q   + +
Sbjct: 241 IIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTTIEVYPNGISTSLPFDVQIGIVNS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           + GLE   II+PGYAIEYDY +P++L PTLETK I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 MKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+  +    +    +R  +Y GV++DDL + G  EPYR+FTSRAEYR+ LR DNAD R
Sbjct: 361 GINAGLQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADAR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV--LTSKNLSSTSISFKQD-GKTR 502
           LTPI  + G I E R  RF + ++     ++ LK     L   NL   +        +  
Sbjct: 421 LTPIAHQFGLIDEARWMRFNEKMENIEKEKARLKQTWAHLQMANLVEVNALLNSPLAREA 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           +  + +  P+ + + L  I P A         E+++I   Y  Y   Q  E +  K  E 
Sbjct: 481 SGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQVEISIKYQGYIEHQQQEIERHKRHEN 540

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             IP +FDY  + +LSNE++ KL   +P ++ QAS+I G+TPAA+++LL+ +KK 
Sbjct: 541 TQIPAEFDYDKVESLSNEVRAKLIQHRPVSIGQASRISGITPAAISILLVNLKKQ 595


>gi|153956502|ref|YP_001397267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium kluyveri DSM 555]
 gi|219856805|ref|YP_002473927.1| hypothetical protein CKR_3462 [Clostridium kluyveri NBRC 12016]
 gi|189039335|sp|A5N450|MNMG_CLOK5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146349360|gb|EDK35896.1| GidA [Clostridium kluyveri DSM 555]
 gi|219570529|dbj|BAH08513.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 628

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/621 (43%), Positives = 393/621 (63%), Gaps = 18/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEA   AA++G  T + T    +IG M CNP IGG  KGHLVREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAGLAAARMGCRTLMCTMNLDSIGFMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA  IQ R+LN  KGPAV   R QAD+  Y   M+  +  Q NLD+ Q EV 
Sbjct: 68  GGEMGVNIDATFIQSRMLNTSKGPAVHSLRAQADKRNYSGRMKSVLERQHNLDLKQLEVV 127

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           G   + +  +  ++ ++ +     T+VL+TGT+L+G + IG +   +G  G  P+N L  
Sbjct: 128 GIRIDNEGKVCGVITKNGAYFETKTIVLSTGTYLKGKVIIGDVSYSSGPNGFMPANDLSQ 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  D+R++PFSFM++ +  +Q+ C +T 
Sbjct: 188 SLLDLGIEIRRFKTGTPARVNRRSVDFSKMIEQPGDKRIVPFSFMSENLDRKQVSCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   T ++I ENI  S +++G IKS GPRYCPSIEDKIVRF  +  HQIF+EPEG +T+ 
Sbjct: 248 TTENTTKVIRENINRSPLFNGSIKSVGPRYCPSIEDKIVRFPNKENHQIFIEPEGEDTNE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y +G ST++PE++Q    RTI GLE V  +R GYAIEYD INP +L PTLE KK+ GLF
Sbjct: 308 LYVDGASTSMPEDVQIAMYRTIIGLENVEFLRTGYAIEYDCINPLQLRPTLEFKKVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAA+QG++AGIN+A K    +     R+D+YIGV+IDDL +KG  EPY
Sbjct: 368 GAGQLNGSSGYEEAASQGIIAGINAALKVKGKEPFILKRSDAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT +G K+G +    ++R+ KY++  N + + +K +   
Sbjct: 428 RMMTSRSEYRLILRQDNADLRLTEMGYKIGLV---TKERYDKYLERKNSIETEIKRI--- 481

Query: 485 SKNLSST----------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            KNL  T          S+   +  K+ + YE +  P+     L  +  D  + +  V E
Sbjct: 482 -KNLYITPKKEVIEFLNSLGSSELKKSISLYELIKRPELDYFKLQLLDMDRPELNEDVQE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            + I S Y  Y  +Q+ + ++ K  E + IP++ DY  +  L  E  +KL  ++P ++ Q
Sbjct: 541 EVNIISKYEGYIKKQLEQVQQFKKFENKFIPENIDYDEIKGLRIEANQKLKKIRPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++PA +++LL+Y++K
Sbjct: 601 ASRISGVSPADISVLLVYLEK 621


>gi|220933187|ref|YP_002510095.1| glucose inhibited division protein A [Halothermothrix orenii H 168]
 gi|219994497|gb|ACL71100.1| glucose inhibited division protein A [Halothermothrix orenii H 168]
          Length = 628

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 383/620 (61%), Gaps = 14/620 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA+   A++G     +T     +  M CNP++GG GK H+VREID
Sbjct: 6   KEYDVIVIGAGHAGSEASLAPARMGFKVLTMTVDLDHVAFMPCNPSLGGPGKSHIVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D   IQ R+LN  KGPAVRG R QAD++ Y L M+R +  + N+D+ Q  
Sbjct: 66  ALGGEMARNMDETMIQIRMLNTSKGPAVRGLRGQADKKQYHLRMKRVLEREPNVDLKQEI 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   I  ++ +   + R   V++TTGTFL+G I IG+    AG     P+N L 
Sbjct: 126 AEKLVIEDGEIKGVITKTGILYRAKKVIVTTGTFLKGKIIIGEATFNAGPNQQYPANKLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K  F   R KTGTP R++  ++ + K ++Q  D+ L  FSF++   T  Q+ C +T
Sbjct: 186 ESLKKAGFKLRRFKTGTPPRVNKNSLDFSKMKEQTGDKGLT-FSFVSPPFTREQVSCWLT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN   + ++SGDI+  GPRYCPSIEDK+VRF  ++ HQIFLEPEG  TD
Sbjct: 245 YTTDETHRIIQENKHRTPLFSGDIEGVGPRYCPSIEDKVVRFPHKDRHQIFLEPEGEFTD 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q   +R+IPG+EK  I+RP YAIEYD I+P +L  TLE K I GL
Sbjct: 305 EYYVAGLSSSLPEDVQIDLVRSIPGMEKAEIMRPAYAIEYDCIDPTQLKLTLEAKHIKGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           ++AGQINGT+GYEEAA QGL+AGIN++      D +   R+++YIGV+ID+L +KG  EP
Sbjct: 365 YMAGQINGTSGYEEAAGQGLIAGINASLSLQGKDPLILKRSEAYIGVLIDELVTKGTNEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLTP G ++G I E R K+F K + +       L+S  +
Sbjct: 425 YRIMTSRAEYRLILRQDNADQRLTPKGYEIGLISEERYKKFRKKVDKIEEALEFLRSNQI 484

Query: 484 TS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +         K L+S  +S     K  T  + L  P    ++L     D  ++   +IE+
Sbjct: 485 SPTPEVRERLKELNSGDLS-----KPVTLEQLLRRPQLEYRDLKYFVDDLPEYPDDIIEQ 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  RQM + ++ K  E +LIP D DY  L  L  E +EKL  +KP +L QA
Sbjct: 540 VSIQVKYKGYIDRQMSQIEQFKKMEDKLIPDDIDYQELENLRLEAREKLDKIKPRSLGQA 599

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++L++Y+++
Sbjct: 600 SRISGVSPADISVLMVYLEQ 619


>gi|116514951|ref|YP_802580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285653|sp|Q058G2|MNMG_BUCCC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116256805|gb|ABJ90487.1| glucose inhibited division protein A [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 634

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 293/613 (47%), Positives = 397/613 (64%), Gaps = 12/613 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIG GHAG EAA+ ++++G  T LIT K STIG++SCNPAIGGLGK  LV+EIDAL
Sbjct: 7   FDIIVIGAGHAGTEAASASSRMGQKTLLITQKRSTIGTLSCNPAIGGLGKSQLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +V D +GIQFR+LN KKG AVR  R QADR LY+  M   + +Q+NL + + EV+
Sbjct: 67  GGLMAKVIDYSGIQFRILNSKKGYAVRSTRAQADRFLYQKNMNYFLNNQKNLTIFEQEVS 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  I+  D  + + S V+LT GTFL G ++IG      GR  D  ++ L N+
Sbjct: 127 DIIIKNYQVQGIITSDGKIFKSSIVILTAGTFLNGKMYIGSDVFDGGRRNDVSASILANN 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
             K+    GRLKTGTP RL  K+I +D  +KQ+ D     FSF+  KI    +Q+ C IT
Sbjct: 187 LKKYFSKIGRLKTGTPPRLKKKSINFDILKKQYGDYPTPVFSFL-GKIEQHPKQVPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  S +YSG I   GPRYCPSIEDKI++F ++  HQIFLEPEG+N++
Sbjct: 246 YTNDHTHSIIKKNLHLSPLYSGSITGIGPRYCPSIEDKIIKFPDKISHQIFLEPEGINSE 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++YPNGIST+LP++IQ   I++I GLE  +I+  GYA+EYDY +P++L  TLE+KKI  L
Sbjct: 306 IIYPNGISTSLPKDIQVDLIQSISGLENAHIVHSGYAVEYDYFDPRDLKMTLESKKIKNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQINGTTGYEEAAAQGL+AG+N+A K    D     R ++YIGV+IDDL SKG  EP
Sbjct: 366 FMAGQINGTTGYEEAAAQGLIAGLNAALKIQCKDTWYPKRNEAYIGVLIDDLCSKGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR +NAD RLT IG KLG I + R K F+K     +  R+ LK+++L
Sbjct: 426 YRMFTSRAEYRLLLRENNADERLTTIGYKLGLIDDFRWKIFSKKQDSISRERNRLKNIIL 485

Query: 484 TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI------ER 535
             K +  +S + K     K  TA++ L  P+ S  +L        K   +VI      E 
Sbjct: 486 QPKTVFFSSNNKKTIYLKKKCTAFDLLRRPEISYNDLILFLNSFLK-KKIVIKNKEITEE 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ +S Y  Y  RQ  E K+ K+ E + +    DY  +  LSNE   KL+  +P ++ QA
Sbjct: 545 IETQSKYFGYIQRQEKEIKKYKYYENKKLYCIKDYREILGLSNEAIIKLNKYRPSSIGQA 604

Query: 596 SKIEGMTPAALNL 608
            +I G+TP  +++
Sbjct: 605 LRISGITPVTISI 617


>gi|78778117|ref|YP_394432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurimonas denitrificans DSM 1251]
 gi|123549636|sp|Q30P84|MNMG_SULDN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78498657|gb|ABB45197.1| Glucose-inhibited division protein A subfamily [Sulfurimonas
           denitrificans DSM 1251]
          Length = 626

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/617 (44%), Positives = 386/617 (62%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVI+IGGGHAG EA+  +A++G  T LI+     +G+ SCNPAIGGL KGHLVREIDA
Sbjct: 2   NYDVIIIGGGHAGVEASLASARMGNKTLLISMLAENVGATSCNPAIGGLAKGHLVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M  + D AGIQFR+LN  KGPAVRG R Q D + YR+  + +IL+  NL+++Q   
Sbjct: 62  LGGEMALITDEAGIQFRILNQTKGPAVRGSRAQIDMDRYRVIARNKILNTPNLELVQEMA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +     +      V++T+GTFLRGVIH+G++K   GR G+  S++L  
Sbjct: 122 ESLIIEDGEVKGVKTNLLNEYSAKRVIVTSGTFLRGVIHVGEIKQIGGRYGEQSSDALSA 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           S      + GRLKTGT AR+D  TI +   E+Q  DE   PFSF T++     T +QI C
Sbjct: 182 SLKSCGLEMGRLKTGTCARVDASTIDFSVMEEQGGDELPNPFSFRTNREEFRKTKKQIPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ L
Sbjct: 242 YITYTNQNTHDIIESNFYRAPMFTGQIEGRGPRYCPSIEDKINRFRDKERHHLFIEPQTL 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q   I ++ G+E   I+R GYAIEYD+++P+EL  TLETKKI
Sbjct: 302 ENTECYINGMSTSLPPDVQQLMINSVKGMENAKIVRYGYAIEYDFVDPRELKHTLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN++      +     R ++YIGV+IDDL +KG 
Sbjct: 362 KGLYLAGQINGTTGYEEAAAQGLMAGINASLSLQGKEPFILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLK 479
            EPYRMFTSRAEYR+ LR ++AD RL+  G   G I +   +R  AK  Q     R L +
Sbjct: 422 KEPYRMFTSRAEYRLLLREESADTRLSHYGHTFGLIDDENYERVKAKEAQIQEGARILRE 481

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           ++   +K   +   S  ++G   T +A + ++   F +  +  + P+   + S +++ + 
Sbjct: 482 TIFTPNKEFIAFLNSIGEEGVRDTISAEQIVARKSFDVSKMLKLIPEFEMYESYILDEIL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +E  YA Y  +Q  E +++K   K  IP++F + S+  LS E+ EKL    P  L  AS+
Sbjct: 542 VEGKYARYVQKQSEEIQKMKKYLKVEIPQNFAFRSISGLSKEIVEKLESFNPPTLQAASQ 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAA+ +L IYIK
Sbjct: 602 ISGITPAAIEILHIYIK 618


>gi|225554736|gb|EEH03031.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus G186AR]
          Length = 699

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/638 (44%), Positives = 394/638 (61%), Gaps = 25/638 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QAYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G
Sbjct: 156 VGDIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++  
Sbjct: 216 EAATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 DDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   D V+YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPDEVIYPNGISMTIPADAQLAMLRTVAGLENVRMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 394 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++   + 
Sbjct: 454 VDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQI 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICP------- 523
             L++LL++    S   S        D   R+A++ L   D SI ++   I P       
Sbjct: 514 TELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSG 573

Query: 524 ---DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E 
Sbjct: 574 KAYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEE 633

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  L  ++P ++  A +IEGMTP A   LL+Y+++ T 
Sbjct: 634 RAALEKVRPESIGMARRIEGMTPVAALKLLVYVRRTTA 671


>gi|193214573|ref|YP_001995772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088050|gb|ACF13325.1| glucose inhibited division protein A [Chloroherpeton thalassium
           ATCC 35110]
          Length = 622

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 383/620 (61%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA   A++G    LITH  + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 3   YDVIVVGAGHAGTEAAFAPARMGLKVLLITHDLTAMARMSCNPAIGGVAKGQITREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +V DA GIQFR+LN  KG A+  PR QADR LY L M+R I ++ N+D+ + +V 
Sbjct: 63  GGEMAKVIDATGIQFRMLNRSKGAAMHSPRAQADRTLYSLDMRRRIEAESNIDLREDDVT 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G  TE     ++V++    I   + +LT GTFL G+IHIG     AGR + +  S  L  
Sbjct: 123 GIRTENGAFKAVVLRSGLEIEGKSAILTNGTFLNGLIHIGLKHYDAGRTLAEPASRGLTE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
             +   F  GRLKTGTP R+D +++ + K E Q  DE   PFSF T+ +  R Q+ C IT
Sbjct: 183 CLVNLGFSAGRLKTGTPPRIDARSVDYSKVETQTPDENPEPFSFETETLKGRPQVSCYIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+LETH+++      S +++G ++  GPRYCPSIEDK+ RF +++ HQIFLEPEG  T+
Sbjct: 243 YTSLETHKVLETGFDESPMFTGRVQGIGPRYCPSIEDKVNRFRDKDRHQIFLEPEGFYTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE +Q + ++TI GLE V +IRPGYAIEYD+ +P +L  TLETK +  L
Sbjct: 303 EMYVNGFSTSLPESVQLRGLKTISGLENVKMIRPGYAIEYDFFHPHQLKSTLETKLVEHL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQIN T+GYEEAAAQGL+AGIN+A K    +    +R+++YIGV+IDDL +K + EP
Sbjct: 363 YFAGQINATSGYEEAAAQGLMAGINAALKIQAKEPFILNRSEAYIGVLIDDLITKSIDEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+RI LR DNAD RL   G  +G +GE   + F K   E   L    +   L
Sbjct: 423 YRMFTSRAEHRIILRQDNADRRLREKGYAVGLVGEEVYQAFLKKKSEIERLHKFFEEKNL 482

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR------KFSSLVIER 535
           +  +LS    +   +   +T    +++  P+     L   C   R        +  V E+
Sbjct: 483 SPDDLSGYYDTTGLEPVLRTLKLKDWIRRPNQDFHRLLEQCETLRGEVEQISQNPKVYEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R+M  A+++   E   IP+ F+Y  +  LS E +EKL    P +L QA
Sbjct: 543 VIIDIKYEGYIRREMQLAEKMMRLENVEIPQKFNYDLIKGLSTEGREKLKKFSPISLGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LL+ + +
Sbjct: 603 SRISGVSPADVSILLVRLGR 622


>gi|229524904|ref|ZP_04414309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae bv. albensis VL426]
 gi|229338485|gb|EEO03502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae bv. albensis VL426]
          Length = 631

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/626 (44%), Positives = 384/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVDNDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ + + L ++          
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFTPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|229515958|ref|ZP_04405415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TMA 21]
 gi|229347058|gb|EEO12020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TMA 21]
          Length = 631

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/626 (45%), Positives = 383/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D  GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHTGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              +   +        L  T +S +  G+     + L  P+ +   L ++   A      
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYDLLTTLPAFAPALEDA 536

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP 
Sbjct: 537 EAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPE 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I G+TPAA+++LL+++KK+
Sbjct: 597 TIGIASRISGITPAAISILLVHLKKH 622


>gi|258405986|ref|YP_003198728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfohalobium retbaense DSM 5692]
 gi|257798213|gb|ACV69150.1| glucose inhibited division protein A [Desulfohalobium retbaense DSM
           5692]
          Length = 626

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/615 (45%), Positives = 378/615 (61%), Gaps = 3/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAGCEAA  AA++G ST L+T     +G +SCNPAIGGL KGH+V+EIDA
Sbjct: 9   TFDVIVVGGGHAGCEAAMAAARMGLSTLLLTINIDRLGHLSCNPAIGGLAKGHMVKEIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD AGIQFR+LN +KGPAVR  R Q DR  Y   +QR++ +Q+NL + +   
Sbjct: 69  LGGRMGLWADQAGIQFRILNTRKGPAVRATRAQMDRATYMRVVQRDLFAQDNLWIKEATA 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  +      + R + V+LTTGTFL G IHIG      GR+GD  +N+L  
Sbjct: 129 QEILAENGSIKGVRTHLEEIHRSANVILTTGTFLTGRIHIGLNNFAGGRLGDPAANALSE 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S      D  RLKTGT  RL   ++ + +   Q  D+   PFSF +  +   Q+ C IT 
Sbjct: 189 SMRGLGLDLARLKTGTVPRLLRDSVDFAQMTPQPGDDPPPPFSFHSPGVQLPQLPCHITY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH  I E    S ++ G I   G RYCPSIEDK+ RF +++ HQ+F+EPEGL+   
Sbjct: 249 TNAATHDSIREGFDRSPMFQGVITGTGARYCPSIEDKVARFPDKDRHQLFVEPEGLDNPE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGI T+LP +IQ + + TIPGLE+  I+RPGYAIEYD++ P +L P+LETK ++GLF
Sbjct: 309 VYPNGIPTSLPLDIQKKLLATIPGLEQAQIVRPGYAIEYDFVPPTQLKPSLETKAVAGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL A IN  R+  +       R  +Y+GV++DDL +KG  EPY
Sbjct: 369 CAGQINGTSGYEEAAAQGLWAAINVLRRHQERAPWILGRDQAYMGVLVDDLVTKGTQEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLTP+G +LG + +   + +   +Q  + L S L+  ++ 
Sbjct: 429 RMFTSRAEHRLLLREDNADQRLTPLGRELGLVDDSHWEIYQSKMQALDSLLSRLEETIIK 488

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                     SI     GK  +    L  P   I++L  + P  R     V+++ +++S 
Sbjct: 489 PDATVREKLHSIGAAVPGKPASLGTLLRQPQLHIRDLEVVAPGLRDLPGHVLDQAEVQSK 548

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ    +  + +E   +P+D  Y ++P LS E+ EKL  ++P  L QA +I G+
Sbjct: 549 YQGYLARQQEMVQRSQRQENIALPEDMAYETIPGLSREVVEKLQTIRPRTLGQAGRISGI 608

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL+ L I +KK 
Sbjct: 609 TPAALSCLEIALKKQ 623


>gi|309379098|emb|CBX22229.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 631

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 389/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPIMSVRGSAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGCKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + ++ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|322711940|gb|EFZ03513.1| vacuolar protein sorting-associated protein 45 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1151

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/630 (45%), Positives = 396/630 (62%), Gaps = 19/630 (3%)

Query: 4    RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            R +DVIVIGGGHAG EA A AA+ GA TAL+T K   IG+ SCNP+ GG+GKG ++REID
Sbjct: 519  RPFDVIVIGGGHAGAEACAAAARTGAKTALVTPKIDNIGTCSCNPSFGGIGKGTIIREID 578

Query: 64   ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            ALDGL G++ D AG+QF +LN  KGPA  GPR Q DR+LY+  M+ E+ S  NL ++   
Sbjct: 579  ALDGLAGKIIDKAGVQFHMLNRSKGPA--GPRAQIDRKLYKQYMREELESYPNLSIVLAS 636

Query: 124  VAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            V+     K            I+ + +    ++  + V++TTGTFL G IHIG    PAGR
Sbjct: 637  VSDIILSKLDPPQALGASKSIAGVRLDSGQVLPSNKVIITTGTFLGGEIHIGLQSYPAGR 696

Query: 174  MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            +G++ +  L  S     F  GRLKTGTP RLD KTI + + E Q+ D    PFSF+ + +
Sbjct: 697  LGEAATFGLSKSLRTAGFQLGRLKTGTPPRLDQKTIDFKELEVQYGDTPPTPFSFLNNAV 756

Query: 234  T-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +   Q+ C IT T   THRI+ EN++++      IK  GPRYCPS+E K++RF ++  H 
Sbjct: 757  SVADQLTCSITHTTDATHRIVRENLQNTVHIRETIK--GPRYCPSLESKVLRFPDKERHI 814

Query: 293  IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
            ++LEPEG  + +VYPNG+S  +P E Q Q +RTI GLE+V +++PGY +EYDYI+P+ L 
Sbjct: 815  VWLEPEGFESQIVYPNGLSMTIPPEAQKQALRTIKGLERVEMLQPGYGVEYDYIDPRGLK 874

Query: 353  PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             TLET+ I GL+LAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR+D YIG+MI
Sbjct: 875  STLETRAIHGLYLAGQINGTTGYEEAAGQGVMAGINAGRVAQGLSEVSISRSDGYIGIMI 934

Query: 413  DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
            DDL +KGV EPYRMFTSR+E+R++ R DNAD RLT  G   G + + R K F+   Q+ +
Sbjct: 935  DDLITKGVTEPYRMFTSRSEFRMAARADNADLRLTEKGRDWGVVSDSRWKAFSDERQQID 994

Query: 473  FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARKF 528
             L  +L S+ LTS   S      K++   RT  + L   +      +Q L +  P+ + +
Sbjct: 995  DLTKILNSVSLTSTQWSEQGWHLKKNSPRRTGIDILRLSNTGTRVDLQQLSTSIPEIKSY 1054

Query: 529  SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            S+ V +R+ IE+ YA Y   Q  E     ++E   +P D +Y ++P L+   KE L    
Sbjct: 1055 STRVRDRVAIEAVYAPYVRMQAAERGRFAYDESVRLPLDINYDAIPGLALSEKELLKAAC 1114

Query: 589  PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            P  L QA ++EG+TPA    LL +I++ ++
Sbjct: 1115 PETLAQARRVEGVTPAGTVRLLAHIRQRSL 1144


>gi|225076367|ref|ZP_03719566.1| hypothetical protein NEIFLAOT_01411 [Neisseria flavescens
           NRL30031/H210]
 gi|224952310|gb|EEG33519.1| hypothetical protein NEIFLAOT_01411 [Neisseria flavescens
           NRL30031/H210]
          Length = 631

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 390/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTNEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 485 TTWYTPQKLAEEEQLRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|242279069|ref|YP_002991198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio salexigens DSM 2638]
 gi|242121963|gb|ACS79659.1| glucose inhibited division protein A [Desulfovibrio salexigens DSM
           2638]
          Length = 627

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/613 (45%), Positives = 376/613 (61%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IV G GHAGCEAA  AA LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 11  FDLIVAGAGHAGCEAAMAAANLGLKTLLLTINVDRIGHLSCNPAIGGLAKGHMVKEIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  +D AGIQFR+LN +KGPAVR  R Q DR  Y   +Q++I SQ+NL V Q    
Sbjct: 71  GGCMGIWSDKAGIQFRILNTRKGPAVRASRAQMDRNEYMRVVQKDIFSQDNLWVRQAMAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +V Q        +V+LTTGTFL+G++HIG      GRMGD  S  +  S
Sbjct: 131 SLIVEDGKAAGVVTQIGEKFHARSVMLTTGTFLQGLMHIGLENFSGGRMGDPASVGMSKS 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  RL   +I +DK E+Q  D+   PFSF T +I+  Q+ C IT T
Sbjct: 191 LKDAGLTLGRLKTGTTPRLLKDSIDYDKLEEQRGDDPPQPFSFRTKEISLPQVSCHITYT 250

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H  I    + S +++G IK  G RYCPSIEDK+ RF E++ HQIFLEPEG ++  V
Sbjct: 251 NEKAHEAIRSGFERSPMFTGVIKGTGARYCPSIEDKVARFPEKDRHQIFLEPEGYDSPEV 310

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP+GI T+LP ++Q + I +I GLE+  I+RPGYAIEYD++ P +L PTLETK + GL+L
Sbjct: 311 YPSGIPTSLPLDVQKRMIHSIEGLEQAQIVRPGYAIEYDFVPPTQLLPTLETKVLPGLYL 370

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A  N+  K    D    SR  +YI V++DDL +KG LEPYR
Sbjct: 371 AGQINGTSGYEEAAAQGLWAACNAFCKLTGRDPFLLSRDQAYIAVLVDDLVTKGTLEPYR 430

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR  NAD RLT IG +LG + +     ++   +  + + +++ S  +  
Sbjct: 431 MFTSRAEYRLLLREGNADLRLTEIGRELGLVKDDHWALYSAKKKGLDEVLAMMNSTQIKP 490

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +    T I      K+      L  P+ SI ++    P+   ++  +I   + +  Y
Sbjct: 491 DQPTREIITKIGGTVPNKSVPLAAVLRQPELSITDMIHFKPEIENYADDIIAEAETQIKY 550

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ     + +  E   +P+D DYS++  L+ E  EKL+ ++P  L QAS+I G+T
Sbjct: 551 EGYLVRQQELVDKFRKMESVSLPEDIDYSAVAGLTREAVEKLTEVRPLTLGQASRISGIT 610

Query: 603 PAALNLLLIYIKK 615
           PAA++ + I++KK
Sbjct: 611 PAAVSSIEIHLKK 623


>gi|15605227|ref|NP_220013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis D/UW-3/CX]
 gi|237802927|ref|YP_002888121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237804849|ref|YP_002889003.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|288561914|sp|P0CD73|MNMG_CHLTR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3328935|gb|AAC68099.1| FAD-dependent oxidoreductase [Chlamydia trachomatis D/UW-3/CX]
 gi|231273149|emb|CAX10062.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274161|emb|CAX10955.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436959|gb|ADH19129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/11222]
          Length = 610

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/615 (45%), Positives = 379/615 (61%), Gaps = 18/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 68  GGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  Q+ C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQVSCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 307 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +            K+ + 
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQ-----------KACIE 475

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
             K     S +F++ G T     + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 476 QEKE--RLSKTFRKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKKN 616
           + A + +L++ +KK+
Sbjct: 594 SVADIQVLMVSLKKD 608


>gi|322700186|gb|EFY91942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Metarhizium acridum CQMa 102]
          Length = 689

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 390/627 (62%), Gaps = 17/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIVIGGGHAG EA A AA+ GA TAL+T K    G+ SCNP+ GG+GKG ++REID
Sbjct: 55  RPFDVIVIGGGHAGAEACAAAARTGAKTALVTPKIDNFGTCSCNPSFGGIGKGTIIREID 114

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GR+ D AG+QF +LN  KGPAV GPR Q DR+LY+  M+ E+ S  NL ++   
Sbjct: 115 ALDGLAGRIIDKAGVQFHMLNRSKGPAVWGPRAQIDRKLYKQYMREELQSYPNLSIVLAS 174

Query: 124 VAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           V+     K            ++ + +    ++  S V++TTGTFL G IHIG    PAGR
Sbjct: 175 VSDIILSKLDPPQAEAASKCVAGVRLDSGQVLPSSKVIITTGTFLGGEIHIGLQSYPAGR 234

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           +G++ +  L  S     F  GRLKTGTP RLD KTI +   E Q+ D    PFSF+ + +
Sbjct: 235 LGEAATFGLSKSLRTAGFQLGRLKTGTPPRLDQKTIDFKGLEVQYGDAPPTPFSFLNNAV 294

Query: 234 T-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +   Q+ C IT T   THRI+ EN++++      IK  GPRYCPS+E K++RF ++  H 
Sbjct: 295 SVADQLTCSITHTTDATHRIVRENLQNTVHIRETIK--GPRYCPSLESKVLRFPDKERHI 352

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEG  + +VYPNG+S  +P E Q Q +RTI GLE+V +++PGY +EYDYI+P+ L 
Sbjct: 353 VWLEPEGFESQIVYPNGLSMTIPPEAQKQALRTIKGLERVEMLQPGYGVEYDYIDPRGLK 412

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLET+ + GL+LAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR+D YIG+MI
Sbjct: 413 STLETRALHGLYLAGQINGTTGYEEAAGQGVIAGINAGRVAQGLSEVSISRSDGYIGIMI 472

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R++ R DNAD RLT  G   G + + R + F+   Q+ +
Sbjct: 473 DDLITKGVTEPYRMFTSRSEFRMAARADNADLRLTEKGRDWGVVSDSRWRAFSDERQQID 532

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARKF 528
            L  +L S+ LTS   S      K++   RT  + L   +      +Q L +  P+   +
Sbjct: 533 DLTKILNSVSLTSTQWSEQGFHLKKNSSRRTGIDILRLSNTGNKIDLQQLSTSIPEIESY 592

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            + V +R+ IE+ YA Y   Q  E     ++E   +P D +Y  +P L+   KE L    
Sbjct: 593 PTRVRDRVAIEAVYAPYIRMQAAERGRFAYDESVRLPLDINYDVIPGLALSEKEVLKAAC 652

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QA ++EG+TPA    LL +I++
Sbjct: 653 PETLAQARRVEGVTPAGTVRLLAHIRQ 679


>gi|311070642|ref|YP_003975565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus atrophaeus 1942]
 gi|310871159|gb|ADP34634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus atrophaeus 1942]
          Length = 628

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/618 (44%), Positives = 383/618 (61%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG   
Sbjct: 68  GGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTLLQGIAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +V Q  +  R   VVLTTGT+LRG I +G L   +G     PS  L   
Sbjct: 128 RLIIEDGECRGVVTQTGAHYRSKAVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+ G +I + KTE Q  DE    FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVKGDSIDYSKTEIQPGDEVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHEIIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKIS LF 
Sbjct: 308 YVQGLSTSLPEDVQQRMLSTIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKISNLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALDREEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG ++G I + R + F          +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERFQSFQTKKAAIEAEKKRLYSVIIKP 487

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                K + S   S  +DG   T  + +  P+ + +++  + P     +  V E+++I+ 
Sbjct: 488 SEENQKYIRSLGGSELKDGVRGT--DLMKRPEMNYESVTKLAPAETPVAPEVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|255311316|ref|ZP_05353886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 6276]
 gi|255317617|ref|ZP_05358863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 6276s]
 gi|296436031|gb|ADH18205.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/9768]
 gi|296437892|gb|ADH20053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/11074]
 gi|297140392|gb|ADH97150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/9301]
          Length = 610

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/615 (45%), Positives = 379/615 (61%), Gaps = 18/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 68  GGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  Q+ C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQVSCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFVEPEGLNTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 307 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +            K+ + 
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQ-----------KACIE 475

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
             K     S +F++ G T     + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 476 QEKE--RLSKTFRKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKKN 616
           + A + +L++ +KK+
Sbjct: 594 SVADIQVLMVSLKKD 608


>gi|157136155|ref|XP_001663678.1| glucose inhibited division protein a [Aedes aegypti]
 gi|108870028|gb|EAT34253.1| glucose inhibited division protein a [Aedes aegypti]
          Length = 644

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/634 (43%), Positives = 410/634 (64%), Gaps = 33/634 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG EA + AA++GA T LITHK STIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 15  YDVVVVGGGHAGTEACSAAARMGARTLLITHKRSTIGEMSCNPSFGGIGKGHLMREVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+Q++VLN ++GPAV GPR Q DR+LY+  +Q+E+    NL++++  V 
Sbjct: 75  DGVCARSCDNSGVQYKVLNKRRGPAVWGPRAQIDRKLYKAEVQKELSETANLEIVEASVE 134

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E+      N I  I +++  ++   ++V+TTGTFLRG I+IG   +PAGR+GD P+
Sbjct: 135 DIILEREEGQSLNRIKGISLKNGDVVWTKSLVITTGTFLRGQINIGLKTMPAGRIGDEPA 194

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
             L  S     F   RLKTGTP R+   +I +D  E+   D   +PFSFM D++      
Sbjct: 195 IGLAKSLEDLGFRMSRLKTGTPPRIKASSINFDILERHPGDNPPVPFSFMNDRVWLNNED 254

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q++C +T T+ + + I+  N+  +   + ++   GPRYCPSIE K++RFG +  HQI+LE
Sbjct: 255 QLDCFLTHTSADVNDIVKRNLHCNRHVTEELT--GPRYCPSIESKVLRFGGKT-HQIWLE 311

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +++++YPNG+S  LPEE Q + +R + GLE+  + RPGY +EYD+++P+EL+ TLE
Sbjct: 312 PEGFDSELIYPNGLSCTLPEEEQIKLVRCLRGLEEAELARPGYGVEYDFVDPRELYQTLE 371

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK+  GLF AGQINGTTGYEEA AQG++AG N+A K+ K   +  SRT+ Y+GV++DDLT
Sbjct: 372 TKRADGLFFAGQINGTTGYEEAGAQGILAGANAAAKTLKRKPLTISRTEGYLGVLVDDLT 431

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           + G  EPYRMFTSRAE+R+SLRPDNAD RLT  G ++G + E R +R          +R 
Sbjct: 432 TLGTNEPYRMFTSRAEFRLSLRPDNADLRLTEKGYQIGLVSEERYQRMVS-------IRE 484

Query: 477 LLKSLVLTSKNLSSTSISFKQD-----GKT---RTAYEFL--SYPDFSIQNLFSICPDAR 526
            LK  +    ++   S ++K+      GK    ++A+E L  +  D   ++L  + P+  
Sbjct: 485 KLKMGIELLSDIKKGSNTWKEQLGLPLGKASIHKSAFEMLAITVEDIKTEDLCDLAPEVL 544

Query: 527 ---KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKE 582
              K   ++ ERL+IE+ Y+     Q  E +E++  E+  IP+  DY S    LS E +E
Sbjct: 545 GWIKDDRVLCERLKIEALYSLSIQEQAKEVEEVQRHEQLRIPRSIDYLSRSLNLSYEEQE 604

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           KL  ++P  +  AS+I+G+TP+ +  L+ Y+K+ 
Sbjct: 605 KLVNIQPQTIAAASRIQGITPSTIVRLVRYVKQQ 638


>gi|166154713|ref|YP_001654831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 434/Bu]
 gi|166155588|ref|YP_001653843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335987|ref|ZP_07224231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis L2tet1]
 gi|205831521|sp|B0B872|MNMG_CHLT2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831522|sp|B0BCD7|MNMG_CHLTB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|165930701|emb|CAP04198.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis 434/Bu]
 gi|165931576|emb|CAP07152.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 610

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/614 (44%), Positives = 379/614 (61%), Gaps = 16/614 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 68  GGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  Q+ C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQVSCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 307 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRRPPFVPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +     +R+A + ++   +    + L  
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLS---SERYAMFQEQKACIEQEKERLSK 483

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSY 542
           T +    T +   +          L  P+ S Q L +  P D R    +V   L++E  Y
Sbjct: 484 TFRKYGDTVVPLTR---------VLCRPEVSYQQLLTEFPADVRDLGPIVGASLEMEIKY 534

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G++
Sbjct: 535 SGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGIS 594

Query: 603 PAALNLLLIYIKKN 616
            A + +L++ +KK+
Sbjct: 595 VADIQVLMVSLKKD 608


>gi|297748628|gb|ADI51174.1| Glucose inhibited division protein A [Chlamydia trachomatis D-EC]
 gi|297749508|gb|ADI52186.1| Glucose inhibited division protein A [Chlamydia trachomatis D-LC]
          Length = 613

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/615 (45%), Positives = 379/615 (61%), Gaps = 18/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 11  YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 71  GGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 131 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  Q+ C IT
Sbjct: 191 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQVSCHIT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 250 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTQ 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 310 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 370 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +            K+ + 
Sbjct: 430 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQ-----------KACIE 478

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
             K     S +F++ G T     + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 479 QEKE--RLSKTFRKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 537 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 596

Query: 602 TPAALNLLLIYIKKN 616
           + A + +L++ +KK+
Sbjct: 597 SVADIQVLMVSLKKD 611


>gi|76789235|ref|YP_328321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis A/HAR-13]
 gi|123606821|sp|Q3KLJ9|MNMG_CHLTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76167765|gb|AAX50773.1| GidA [Chlamydia trachomatis A/HAR-13]
          Length = 610

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/615 (45%), Positives = 379/615 (61%), Gaps = 18/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    T+  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTVAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 68  GGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  Q+ C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQVSCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 307 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +            K+ + 
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQ-----------KACIE 475

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
             K     S +F++ G T     + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 476 QEKE--RLSKTFRKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKKN 616
           + A + +L++ +KK+
Sbjct: 594 SVADIQVLMVSLKKD 608


>gi|194332860|ref|YP_002014720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prosthecochloris aestuarii DSM 271]
 gi|194310678|gb|ACF45073.1| glucose inhibited division protein A [Prosthecochloris aestuarii
           DSM 271]
          Length = 620

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/620 (44%), Positives = 375/620 (60%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEA    A++G    LIT   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAVLAGARMGHKCLLITSDLTAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN  KGPA+  PR QADR  Y   M+R I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDSTGIQFRMLNRSKGPAMHSPRAQADRNEYTQYMRRVIEREPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
               +       ++    +I C +++L  GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 DIRADNGTCRGAIISTGRIIECRSLILACGTFLNGLIHIGMSHYPGGRTLAEPPVEKLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F  GRLKTGTPAR+D +++ + K  +Q  D   + FSF T      Q+ C +T 
Sbjct: 182 NLASLGFKQGRLKTGTPARIDKRSVDYTKVSEQPGDTEPVHFSFTTAPARKEQLSCHLTA 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+I+      S ++SG ++  GPRYCPSIEDKI RF ER  H IFLEPEG +T+ 
Sbjct: 242 TTEETHKILETGFDRSPLFSGKVQGVGPRYCPSIEDKIFRFKERKSHHIFLEPEGFDTNE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG ST+LPE+IQ + +R+IPGLE+V IIRPGYAIEYDY  P +L PT+ETK I  L+
Sbjct: 302 MYVNGFSTSLPEDIQIKAMRSIPGLEQVKIIRPGYAIEYDYFYPWQLHPTMETKVIENLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+A K +    +   R+++YIGV+IDDL +K   EPY
Sbjct: 362 FAGQINGTSGYEEAAAQGLMAGINAALKIDGKTPLTLKRSEAYIGVLIDDLITKETNEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTS AE+RI LR DNAD RLT  G   G       +R  +     + ++ LL+   +T
Sbjct: 422 RMFTSAAEHRIILRQDNADRRLTSYGHACGLQTSETMERLRQKEAAIHAIQELLREFRIT 481

Query: 485 S---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL------FSICPDARKFSSLVIER 535
               K LS  + S   D   R     L  P  S+Q++      F    +A      V E+
Sbjct: 482 PDILKKLSKQNTSALPDESIR-CINLLKRPHVSLQSIKDASSEFQERLNAISADQDVHEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R+ + A++I   E  +IP+ FDY  +  LS+E +EKL   +P  + QA
Sbjct: 541 IEIDIKYEGYIKREQLIAEKILRLEDNIIPRSFDYMKIKGLSSEGREKLIRHQPSTIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++L++ I +
Sbjct: 601 SRILGVTPADISVLMVKIGR 620


>gi|313667505|ref|YP_004047789.1| glucose inhibited division protein A [Neisseria lactamica ST-640]
 gi|313004967|emb|CBN86395.1| glucose inhibited division protein A [Neisseria lactamica 020-06]
          Length = 655

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 389/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPIMSVRGSAEMHPRQVS 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 269 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 329 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 389 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 449 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGCKIGLVGEAQWRMFNEKREAVEREIQRLK 508

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + ++ VIE
Sbjct: 509 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIE 568

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + Q
Sbjct: 569 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQ 628

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 629 ASRISGVTPAAVALLMVHLKR 649


>gi|304318132|ref|YP_003853277.1| glucose inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779634|gb|ADL70193.1| glucose inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 623

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/614 (44%), Positives = 381/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV VIG GHAGCEAA   A+LG  T        +I  M CNPAIGG  K +LVREIDA
Sbjct: 7   SYDVAVIGLGHAGCEAALATARLGLKTVAFAINLDSIALMPCNPAIGGPAKTNLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R LN  KGPAVR  R Q+D++ Y+  M+  +  QENLD+ Q EV
Sbjct: 67  LGGQMAINTDETLIQERTLNTSKGPAVRALRAQSDKKRYQFNMKYTLEKQENLDIKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   + S++ ++ +   C + ++TTGT+LRG I IG +    G  G  P+N L  
Sbjct: 127 VDIEVENGEVKSVITKNGARYLCKSCIVTTGTYLRGRIIIGDVSYSGGPNGLFPANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              + +    R KTGTPAR+D K+I +D  E Q  DE++ PFS++ D+I   QI C +T 
Sbjct: 187 CLERLNIKLMRFKTGTPARVDKKSINFDAMEIQPGDEKIKPFSYLHDEINVEQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +IM NI  S +YSG+IK  GPRYCPSIEDK+V+F ++  HQ+F+EPEG NT+ 
Sbjct: 247 TNSRTHEVIMRNIGRSPLYSGEIKGVGPRYCPSIEDKVVKFPDKPRHQLFIEPEGRNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S+++PE++Q +F+RTI GLE V ++RPGYAIEYD I+P +L  +LE K ISGLF
Sbjct: 307 MYVQGMSSSMPEDVQIEFLRTIKGLENVKVMRPGYAIEYDCIDPTQLKQSLELKTISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNREPFILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G ++G + + R +RF K   +Y      LK+ ++ 
Sbjct: 427 RMLTSRAEYRLILRQDNADFRLTEKGRQIGLVDDERYERFLKKKIQYEKEMERLKTAMIV 486

Query: 485 SKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIES 540
             +  +  +  K      T    Y+ L  P+    +   I  D        V E++ I  
Sbjct: 487 PSDFVNEYLKSKGSSPIVTGITMYDLLKRPEIDYISSKVIDKDRPEDIRDDVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP   +Y  +  +S E ++KL  + P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLEQVEKFKALENKKIPSWINYDDIKGISIEARQKLKSIMPTSVGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA ++++LIY++
Sbjct: 607 VSPADISVILIYMQ 620


>gi|329118274|ref|ZP_08246984.1| glucose inhibited division protein A [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465695|gb|EGF11970.1| glucose inhibited division protein A [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 631

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/618 (46%), Positives = 392/618 (63%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+I++GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+DA
Sbjct: 9   TYDIIIVGGGHAGTEAALAAARMGADTLLLTHNIETLGQMSCNPSIGGIGKGHLVREVDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NLD+ Q  V
Sbjct: 69  LGGAMALATDLSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQPNLDLFQQAV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S +    N + +   VVLT GTFL G IHIG      GR GD  + SL  
Sbjct: 129 DDILLDGERVSGVKTAMNVVFKARAVVLTAGTFLAGKIHIGLENYSGGRAGDPAAQSLSG 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              + +   GRLKTGTP R+DG+TI +   E+Q  D  +   S   +   + RQ+ C IT
Sbjct: 189 CLKELNLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDTPIPVMSVRGNAAMHPRQVSCWIT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T+
Sbjct: 249 HTNTQTHDIIRTGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTTN 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+GL
Sbjct: 309 ECYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTINGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG N+ +     + +   R  +Y+GV++DDL +KGV EP
Sbjct: 369 FFAGQINGTTGYEEAAAQGLLAGANAVQYVRNQEPLILRREQAYLGVLVDDLITKGVNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G K+G IG+ + + F +  +        LK+   
Sbjct: 429 YRMFTSRAEYRLQLREDNADMRLTEDGRKIGLIGDAQWRAFNEKREAVEREIHRLKTTWY 488

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VIERLQ 537
           T + LS +    +  ++  +    ++ L  P+     L ++ PDA   ++L   V E+++
Sbjct: 489 TPQKLSESEQMRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAAPLATLPENVAEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P + DY+ +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQQEEINSRRDIETLRLPAEIDYAKVKGLSAEVQQKLNAHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 608 ISGVTPAAVALLMVHLKR 625


>gi|255348875|ref|ZP_05380882.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 70]
 gi|255503415|ref|ZP_05381805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 70s]
 gi|255507093|ref|ZP_05382732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis D(s)2923]
 gi|289525543|emb|CBJ15021.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis Sweden2]
 gi|296435103|gb|ADH17281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis E/150]
 gi|296438823|gb|ADH20976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis E/11023]
          Length = 610

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/616 (45%), Positives = 379/616 (61%), Gaps = 18/616 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG   
Sbjct: 68  GGIMAEITDLSGIQFRILNQIKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D   + F    +    T  QI C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHN-VCFVHRNEMFVPTLPQISCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 HTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I GL
Sbjct: 307 EVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRRPPFVPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +            K+ + 
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQ-----------KACIE 475

Query: 484 TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
             K     S +F++ G T     + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 476 QEKE--RLSKTFRKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPIVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKKNT 617
           + A + +L++ +KK+ 
Sbjct: 594 SVADIQVLMVSLKKDA 609


>gi|94265686|ref|ZP_01289425.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
 gi|93453772|gb|EAT04144.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
          Length = 627

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/620 (45%), Positives = 382/620 (61%), Gaps = 25/620 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN+ YD+IVIG GHAGCEAA  AA+LG  TA++     TIG++SCNPA+GGL KGHLV+
Sbjct: 1   MINQRYDIIVIGAGHAGCEAALAAARLGCDTAVLVMNADTIGALSCNPAVGGLAKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M R  DA GIQFR LN  KGPAVR  R QADR+ Y   +++ +  Q+NL + 
Sbjct: 61  EIDALGGEMARNIDATGIQFRRLNTSKGPAVRSSRAQADRQRYPARLKQVLEQQKNLTIR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  ++      +R   V++TTGTFL G+IHIG    PAGRMGD PS 
Sbjct: 121 QSTVDRLLVEDKRVVGVLTSLGEELRAGAVIITTGTFLNGLIHIGLKTFPAGRMGDMPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
           +L     +  F  GR+KTGT  RL G +I +   E QF D+    FSF     + T  Q+
Sbjct: 181 ALPTHLKELGFAMGRMKTGTTPRLAGNSIDYSGLEVQFGDDPPPLFSFANAGGRPTLPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T   TH II      S + SG I+  G RYCPSIEDK+ RF +++ HQIFLEPE
Sbjct: 241 PCHITYTGAATHEIIRAGCDRSPLLSGVIEGIGARYCPSIEDKVARFADKDRHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  VYPNGIST+LP ++Q   +RTIPGLE+  ++RPGYAIEYDY++P EL P+LE+K
Sbjct: 301 GLDTTEVYPNGISTSLPMDVQLAMLRTIPGLEQARLVRPGYAIEYDYVDPLELQPSLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +++ LFLAGQINGT+GYEEAAAQGL+AGIN+AR+      +   R+ +YIGV+IDDL +K
Sbjct: 361 RLANLFLAGQINGTSGYEEAAAQGLLAGINAARQLGGQPPLVLDRSQAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RL PIG ++G + E+R + F +  Q    L   L
Sbjct: 421 GTKEPYRLFTSRAEYRLLLREDNADARLCPIGWQIGLLDEQRYRAFERKQQTMAELHQRL 480

Query: 479 KSLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------PDARK 527
           +   +     T++ L+  + S  +  ++ +  E L  P+  +  + ++       P A  
Sbjct: 481 RQTTIRPGPATNRRLAELASSPLR--QSCSLAELLKRPELDLAAVLALAQAATDEPAAAG 538

Query: 528 FSSLVIE----------RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                +E           +Q+E  Y  Y  RQ  + +  +  E   +P D  Y  LP LS
Sbjct: 539 TEPADLELPVTLPELGHEVQLEIKYEGYITRQREQVERFRKLESIRLPTDLVYRGLPGLS 598

Query: 578 NELKEKLSILKPFNLLQASK 597
           +E+ EKL  ++P  L QA++
Sbjct: 599 SEVVEKLEKVRPRTLGQAAR 618


>gi|15616623|ref|NP_244929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus halodurans C-125]
 gi|12643249|sp|Q9RCA8|MNMG_BACHD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|10176686|dbj|BAB07780.1| glucose-inhibited division protein [Bacillus halodurans C-125]
          Length = 632

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/614 (43%), Positives = 389/614 (63%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   FDVIVVGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  +ENL + QG V 
Sbjct: 68  GGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEEENLLLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++    +  R   VV+TTGT+LRG I IG L   +G     PS +L   
Sbjct: 128 RLIIEDGECRGVITNTGAEYRAKAVVVTTGTYLRGKIIIGDLAYESGPNNMQPSINLSYH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  R KTGTP R++G+TI +DKTE Q  DE    FS+ T K    Q+ C +T T
Sbjct: 188 LQELGFEMVRFKTGTPPRVNGETIDYDKTEIQPGDEVPRAFSYETTKYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  V
Sbjct: 248 GDKTHQIINDNLGRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRHTSEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +++IPGLEK  ++RPGYAIEYD I P +L+PTLETKK+ GLF 
Sbjct: 308 YVQGLSTSLPEDVQLDVLKSIPGLEKARMMRPGYAIEYDAIVPTQLWPTLETKKVPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAALRVQGKDGLILDRSEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RLT  G ++G I   R +RF +   +    +  L+S+ +  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEKGYEIGLIARERYERFCEKKAQIAAEKKRLESITVKP 487

Query: 486 KNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
               +  +        + A +   FL  P+ + +++  + P   ++ S+ V E+++I+  
Sbjct: 488 SKEVNALLEEVGSAPLKEAVQANVFLKRPEVTYEHVAKVIPAPEQELSADVAEQVEIQIK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  + + + +  K    + IP+D DY ++  L+ E K+KLS ++P ++ QAS++ G+
Sbjct: 548 YEGYISKMLQQVERAKKMNDKKIPEDLDYDAINGLATEAKQKLSEVRPLSVGQASRVSGV 607

Query: 602 TPAALNLLLIYIKK 615
            P+ +++LL+Y+++
Sbjct: 608 NPSDISILLVYLEQ 621


>gi|325095068|gb|EGC48378.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus H88]
          Length = 673

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/636 (44%), Positives = 393/636 (61%), Gaps = 25/636 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDA
Sbjct: 11  AYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+V
Sbjct: 71  LDGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGKV 130

Query: 125 AGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                 K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G+
Sbjct: 131 GDIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLGE 190

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
           + +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++   
Sbjct: 191 AATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDVD 250

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H I
Sbjct: 251 DEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHMI 308

Query: 294 FLEPEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +LEPEG   D V+YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L 
Sbjct: 309 WLEPEGFKPDEVIYPNGISMTIPADAQLAVLRTVAGLENVRMLQAGYGVEYDYVDPRSLR 368

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+
Sbjct: 369 PTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIMV 428

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+EYRI+ R DNAD RLT  G ++G +G++R + F++   +  
Sbjct: 429 DDLITKGVSEPYRMFTSRSEYRIATRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQIT 488

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICP-------- 523
            L++LL++    S   S        D   R+A++ L   D SI ++   I P        
Sbjct: 489 ELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSGK 548

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
              A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E +
Sbjct: 549 AYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEER 608

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y+++ T
Sbjct: 609 AALEKVRPESIGMARRIEGMTPVAALKLLVYVRRTT 644


>gi|325291446|ref|YP_004267627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966847|gb|ADY57626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 639

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 379/621 (61%), Gaps = 12/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCE A  +A++G  T L+T     IG+M CNP++GG  KGHLVREIDAL
Sbjct: 12  YDVIVIGAGHAGCEGALASARMGCQTLLVTLNLDKIGNMPCNPSVGGPAKGHLVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD   +Q R+LN  KGPAV   R Q+D+  Y L + + +L Q+NL ++Q  V 
Sbjct: 72  GGQMALTADDTSLQARMLNTGKGPAVHALRVQSDKRAYHLHLLKTVLQQDNLTLVQALVQ 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + +  IV    +     +V+LT GT+LR  I IG+     G  GD  S++L   
Sbjct: 132 KLLIADHQVCGIVTNTGARFLAESVILTGGTYLRSRIIIGEAIYDGGPTGDLTSSALSLQ 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKI-----TNRQIE 239
               D   GR KTGTP R+   ++ + K   Q  DE    FSFM T+ +       +Q+ 
Sbjct: 192 LQDMDVQLGRFKTGTPPRIHKNSVDYSKFALQCGDEVQRRFSFMPTESLFWGSDPEKQLP 251

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  T  E H+II EN+  + +Y+G ++  GPRYCPSIEDK+VRF ER  HQ+FLEPEG
Sbjct: 252 CWLGYTTEEGHQIIRENLDRAPLYTGVVEGIGPRYCPSIEDKVVRFAERKAHQLFLEPEG 311

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +++ +Y  G+ST+LPEEIQ +F  +IPGLEK  I+RPGYAIEYDY+ P +L  TLE K 
Sbjct: 312 FDSEELYVAGMSTSLPEEIQQRFFHSIPGLEKAKILRPGYAIEYDYVKPFQLSLTLELKD 371

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             GLF AGQINGT+GYEEAAAQGL+AGIN+A K    +     R+D Y+GV+IDDL +K 
Sbjct: 372 WPGLFTAGQINGTSGYEEAAAQGLLAGINAALKVRNKEAFILRRSDGYLGVLIDDLVNKE 431

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K   E   +  +  
Sbjct: 432 IKEPYRLLTSRAEYRLLLRQDNADLRLTPKGREIGLVSDERWNYFQKKKMELETITEMSH 491

Query: 480 SLVLTSKNLSSTSISFKQD-----GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +   ++ ++    I  K       G  R A +    P+ + Q++  + P  +++ S  +E
Sbjct: 492 NTFFSNMDIKVGEILAKAGSTSLRGSIR-AEDLFKRPEINFQSVLELMPQLKEYQSDTVE 550

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
              I+  Y  Y  +Q+ E +     E+RL+P+D D++ +  LSNE +++L  ++P NL Q
Sbjct: 551 EAVIQLKYEGYISKQLEEVERFNRLEERLLPQDLDFNEVRGLSNEARQRLFEVRPLNLGQ 610

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ PA +++LLI++++
Sbjct: 611 ASRISGVNPADISVLLIFLEQ 631


>gi|320109234|ref|YP_004184824.1| glucose inhibited division protein A [Terriglobus saanensis SP1PR4]
 gi|319927755|gb|ADV84830.1| glucose inhibited division protein A [Terriglobus saanensis SP1PR4]
          Length = 629

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 294/641 (45%), Positives = 388/641 (60%), Gaps = 46/641 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA  AA++G  TA+ T     I  MSCNPAIGG+ KGHLVRE+DA+
Sbjct: 7   YDVAVVGAGHAGCEAAVAAARMGLRTAIFTLNLDLIAQMSCNPAIGGIAKGHLVREVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGEV 124
            G+MG VADA GIQFR+LN  +GPAV  PR Q D+ LYR+ M RE+L +E NL + Q EV
Sbjct: 67  GGVMGEVADACGIQFRLLNTSRGPAVWSPRAQCDKALYRVKM-REVLEREKNLFIKQAEV 125

Query: 125 -----------AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                      AG   +T +  I+ + ++D  +I    VV+TTGTFL G+IH G+ +  A
Sbjct: 126 IDVVLEPVSGSAGQRVSTGQRRITGLRLRDGRVIEAKAVVITTGTFLNGLIHCGEQQYTA 185

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G+  S  L  S  K      RLKTGTP RLDG+TI W + E+Q  DE   PFSF T 
Sbjct: 186 GRSGEPASVLLGESLKKLGLRECRLKTGTPPRLDGRTIDWARFEEQPGDEEPTPFSFRTS 245

Query: 232 K---ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           +      +QI C I  T  ET ++I +N+  S +Y+G I+  GPRYCPSIEDKIVRF ++
Sbjct: 246 EEQFPALKQISCYIAVTTPETLQLIRDNVHRSPMYTGQIEGIGPRYCPSIEDKIVRFPDK 305

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ FLEPEGLNT  VY NG+ST+LP E+Q   +R+IPGL    ++RPGYAIEYD I+ 
Sbjct: 306 TQHQFFLEPEGLNTHEVYINGMSTSLPMEVQSAMVRSIPGLGNAEMLRPGYAIEYDAIDA 365

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            EL  +L+ K I GL+LAGQINGT+GYEEAA QGL+AGIN++            R++ Y 
Sbjct: 366 TELDRSLKVKSIDGLYLAGQINGTSGYEEAACQGLMAGINASLSVKGEPMFTLDRSEGYT 425

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G++IDDL SKG  EPYRMFTSRAE+R+ LR DNAD RLTP    LG I +     F    
Sbjct: 426 GILIDDLISKGTNEPYRMFTSRAEFRLHLRIDNADVRLTPKARALGLITDEAWAEFEARQ 485

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--AR 526
                L+  L++  +  + L+                  L  P+ ++   F + P   A 
Sbjct: 486 MRMARLKVALETTRVDGELLAKR----------------LKRPEVTV---FDLIPSLTAS 526

Query: 527 KFSSLVIERLQIES-------SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
           +FS  +  RL+ E+        YA Y  +Q    +++K  E R+IP  F Y  +  LS E
Sbjct: 527 EFSGPLGWRLKSEAKAVETQIKYAGYLAQQDRSVEKLKASEARVIPTSFSYKGISGLSRE 586

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           ++EKL  ++P  + QA  I G+TPAA+ L+ I I+ +T +L
Sbjct: 587 MQEKLERVRPMTVGQAGGIPGVTPAAMTLINILIEVHTREL 627


>gi|329768828|ref|ZP_08260257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella sanguinis M325]
 gi|328838221|gb|EGF87834.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella sanguinis M325]
          Length = 627

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/615 (44%), Positives = 379/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  +++ G ST +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAYASSRKGVSTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  TV++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VKELIIENNKVVGLKTMLGTAYKAKTVIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLP 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  D     FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDNEKHAFSYETTEYVEDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG I+  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNNSTHEIIDKNLGRSAMYSGVIQGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   + +I GLE   I+R GYAIEYD INP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVHSIAGLENAVIMRNGYAIEYDAINPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT    K G I E R K+F             LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYKYGLITEERYKKFCDKRNSVQNEIERLKTFRI 485

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    +   +      + R    A + L  P+ S +N+  +  D  K +  VIE+++IE 
Sbjct: 486 TPTQKTLEKLQELNSAEIRDGILAIDMLRRPELSYENIMYLAEDDTKLARDVIEQVEIEV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K   +  IPKD DY  +P+L+ E +EKL  + P  + QAS+I G
Sbjct: 546 KYEGYIKKSLQQVEKLKKMNEMKIPKDLDYDDVPSLAIEAREKLKKVLPLTIGQASRISG 605

Query: 601 MTPAALNLLLIYIKK 615
           + PA +++LL+++++
Sbjct: 606 VNPADISILLVFLEQ 620


>gi|331246515|ref|XP_003335890.1| hypothetical protein PGTG_17721 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314880|gb|EFP91471.1| hypothetical protein PGTG_17721 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 692

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/627 (44%), Positives = 392/627 (62%), Gaps = 14/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ ++DV+V+GGGHAG EAA+ AA+  + T L+T   ST+G MSCNP+ GG+GKG L+RE
Sbjct: 67  ISNNWDVVVLGGGHAGVEAASAAARTNSRTLLVTSNWSTVGEMSCNPSFGGIGKGTLIRE 126

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+  +  D AGI F++LN  KGPAV GPR Q DR LY+ A+QR+I SQ NL+V +
Sbjct: 127 IDALGGVCAQACDEAGIVFQMLNRSKGPAVYGPRAQMDRGLYKEAIQRQIKSQLNLEVKE 186

Query: 122 GEVAGF-----NTEKNIISS-----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V         T+  I SS     + ++    + C  +V+ TGTFL G IHIG+     
Sbjct: 187 GTVTDLLLEDDPTQPGITSSRRVAGLKLESGETLNCKALVIATGTFLGGEIHIGRKTSAF 246

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-- 229
           GR+G+  S SL NS     F   R+KTGTP R+   +I +D    Q  D    PFSF   
Sbjct: 247 GRIGERSSTSLSNSLKNSGFKLARMKTGTPPRISKSSIHFDNLMVQQGDVPPKPFSFTNR 306

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           T K  N+Q+ C  T T   TH I+ EN+  S+    ++  +GPRYCPS+E K+ RF  R+
Sbjct: 307 TVKHANQQLCCWKTHTTKATHEIVQENLHLSSYVREEV--HGPRYCPSLEAKVTRFSHRD 364

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG ++D++YPNGIST +PE+ Q + +RTIPGLEKV +++PGY +EYD+I+P+
Sbjct: 365 SHMIWLEPEGFHSDLIYPNGISTTMPEDAQLKMMRTIPGLEKVEMVQPGYGVEYDHIDPR 424

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           EL  TLETK I GLFLAGQINGTTGYEEAAAQG++AGIN+  KS     +  +R DS+IG
Sbjct: 425 ELKNTLETKAIQGLFLAGQINGTTGYEEAAAQGVLAGINAGLKSRNALPLILTRADSFIG 484

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V++DDLTSKGV EPYRMFTSR+E+R++LR DNAD RLT    + G I +RR         
Sbjct: 485 VLVDDLTSKGVQEPYRMFTSRSEFRVALRVDNADLRLTEKARRCGVIDDRRWNILQDTES 544

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           + + L   L+S+ L  +  +   I  ++D   +TA++ L      ++ L  I P+     
Sbjct: 545 KIDRLILALQSISLPQQTWARHGIKVREDAVQKTAFDVLRVQGVKMELLKPIIPEIDAIE 604

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +  R+++E+ Y     R     K +  +E  ++P   +YS L  LS+E ++KL+  +P
Sbjct: 605 EEIWRRVEVEALYRPIIKRYEQNVKYLIEDENMILPSSINYSELEYLSSEARQKLTESRP 664

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN 616
             L  A +++G+ P  L LL  +++ +
Sbjct: 665 LTLGVAQRLQGIDPGELILLRKHLRNS 691


>gi|156064023|ref|XP_001597933.1| hypothetical protein SS1G_00019 [Sclerotinia sclerotiorum 1980]
 gi|154690881|gb|EDN90619.1| hypothetical protein SS1G_00019 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 685

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/622 (44%), Positives = 388/622 (62%), Gaps = 10/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDV+VIGGGHAG EA A AA+ GA TALIT K   IG  SCNP+ GG+GKG ++RE+D
Sbjct: 36  RPYDVVVIGGGHAGAEACAGAARSGARTALITPKLENIGVCSCNPSFGGIGKGTMLREVD 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR+ D AG+QF+VLN KKGPAV GPR + DR+LY+  M+ E+ +  NL ++ G 
Sbjct: 96  ALDGVAGRIIDKAGVQFKVLNRKKGPAVWGPRARVDRDLYKKHMREELEAYPNLSIVTGS 155

Query: 124 VAGF-------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           VA          T+   I+ + ++   +I    VV+TTGTFL G IHIG    PAGRMG+
Sbjct: 156 VADIIVSKEEGETQNGKITGVRLESGEIIPTKQVVITTGTFLGGEIHIGLECYPAGRMGE 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-N 235
           + +  L  S     F  GRLKTGTP RL   +I +     Q  D+   PFS++   ++  
Sbjct: 216 AATFGLSKSLKDAGFTLGRLKTGTPPRLAKGSIDFKNLAVQPGDQPPTPFSYLNKTVSVQ 275

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C  T TN  +H ++  N+  S      +K  GPRYCPS+E K++RF +++ H ++L
Sbjct: 276 EQLLCHATYTNEASHAVVRANLDKSIHIRETVK--GPRYCPSLESKVIRFSDKDRHIVWL 333

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+D++YPNGIS  +P E Q Q ++TIPGLE V +  PGY +EYDY++P+ L  TL
Sbjct: 334 EPEGFNSDIIYPNGISMTIPAEAQEQLLKTIPGLENVTMTAPGYGVEYDYVDPRSLKATL 393

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S  L  +  SR+D YIG+MIDDL
Sbjct: 394 ETKAIQGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSLPQLVLSRSDGYIGIMIDDL 453

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +GE+R   F   + +   L+
Sbjct: 454 ITKGVSEPYRMFTSRSEYRMSARADNADLRLTEKGRSAGVVGEKRWSAFNDEVAQMEGLK 513

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             L     ++    +       D   R+A++ L   D +I +L +  P+   ++  + +R
Sbjct: 514 LALGKSTFSAPVWINDGFKVSNDSTMRSAFDVLRIRDVTINDLSTRIPEILTYTQRIRDR 573

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE+ YA Y  +Q    +  + +E   +P D DY S+  +S   K  L + +P ++ QA
Sbjct: 574 VGIEAVYAPYVAQQKAAQRVFQKDEMLKLPVDLDYDSIYGISMHEKSVLKMTRPESVGQA 633

Query: 596 SKIEGMTPAALNLLLIYIKKNT 617
            +IEGMTP+    LL ++++ +
Sbjct: 634 RRIEGMTPSGCLRLLAFVRERS 655


>gi|238020151|ref|ZP_04600577.1| hypothetical protein GCWU000324_00022 [Kingella oralis ATCC 51147]
 gi|237868545|gb|EEP69549.1| hypothetical protein GCWU000324_00022 [Kingella oralis ATCC 51147]
          Length = 631

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/622 (46%), Positives = 391/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVI++GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIIVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQPNLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +S +    N + +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDILLDGERVSGVKTAMNVVFKARAVVLTAGTFLAGKIHIGLENYSGGRAGDPAAQSLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
                     GRLKTGTP R+DG+TI +   E+Q  D    P   M+ +    +  RQ+ 
Sbjct: 188 GCLKGLQLPQGRLKTGTPPRIDGRTIDFSVLEEQPGD---TPIPVMSVRGNAAMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +     + +   R  +Y+GV++DDL +KG
Sbjct: 365 INGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQEPLILRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G IG+ + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGRKIGLIGDAQWRAFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL---VI 533
           +   T + L  +    +  ++  +    ++ L  P+     L ++ PDAR   +L   V 
Sbjct: 485 TTWYTPQKLPESEQMRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDARPSETLPENVA 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P + DY+ +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQQEEINSRRDIETLRLPAEIDYAKVKGLSAEVQQKLNAHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|310644870|ref|YP_003949629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Paenibacillus polymyxa SC2]
 gi|309249821|gb|ADO59388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Paenibacillus polymyxa SC2]
          Length = 629

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/613 (45%), Positives = 383/613 (62%), Gaps = 6/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI++G GHAG E+A  AA++G  T +IT     +  M CNP+IGG  KGH+VREIDAL
Sbjct: 8   YDVIIVGAGHAGVESALAAARMGCRTLMITINLDMVAFMPCNPSIGGPAKGHVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+ AM+  +  + NL + QG V 
Sbjct: 68  GGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHAMKETMEKEPNLTLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L   
Sbjct: 128 ELIIEDGKCVGVITKTGTEYRSKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSLRLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C +T T
Sbjct: 188 LRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDQPKFFSYETKSSDNEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           ++ETH+II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT   
Sbjct: 248 SVETHQIINDNLHRAPMFSGLIEGTGPRYCPSIEDKVVRFSDKPKHQIFLEPEGKNTSEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +RTIPG+EKV ++R GYAIEYD + P +L+PTLETKK+ GLF 
Sbjct: 308 YVQGLSTSLPEDVQLAVLRTIPGMEKVEMMRNGYAIEYDAMVPTQLWPTLETKKVPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVVLDRSQGYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKSL 481
           + TSRAEYR+ LR DNAD RLTPIG  +G I + R +RF     K  QE   LR      
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTPIGHDIGLITDERYERFLDKKQKVEQEIERLRLAKVRP 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           V  ++ L     +  QDG        L  P+ S   +  I P     +    E+++I+  
Sbjct: 488 VDVNEMLEQGGSAPIQDGSNLLT--VLRRPEISYAQVAQISPSPVALTEEEQEQVEIQIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q++  + ++  EK+ +P+D  Y+ +  L+ E K+KL  ++P ++ QAS+I G+
Sbjct: 546 YAGYIEKQLMHVERLQKMEKKKLPEDIAYNEVQGLAIEAKQKLEKIRPMSIGQASRISGV 605

Query: 602 TPAALNLLLIYIK 614
           TPA +++LL+Y++
Sbjct: 606 TPADISILLVYLE 618


>gi|296134493|ref|YP_003641740.1| glucose inhibited division protein A [Thermincola sp. JR]
 gi|296033071|gb|ADG83839.1| glucose inhibited division protein A [Thermincola potens JR]
          Length = 634

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 13/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AA+LG  T  +T     +  M CNPA+GG  KGHLVREIDA
Sbjct: 7   TYDVIVIGTGHAGCEAALAAARLGCKTLAVTLNMDNVAFMPCNPAVGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++LY+L M++ +  + NLDV Q  V
Sbjct: 67  LGGQMGINTDKTHIQMRMLNTGKGPAVHALRAQADKKLYQLEMKKTLELEPNLDVKQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N ++ +V    ++ +   V++T+GTFLR  I IG +    G  G  P+  L  
Sbjct: 127 EKIILQGNRVTGVVTNTGAIFQARAVIITSGTFLRARIIIGDVNYSGGPSGQFPAQKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GR KTGTPAR+  K++ + K   Q  D+    FSF+  K+   QI C +T 
Sbjct: 187 SLKELGLELGRFKTGTPARVHRKSVDFSKMIIQPGDDYPHTFSFIMPKMKREQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II+ N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+ 
Sbjct: 247 TTEDTHKIILANLHRSPLYTGKIEGTGPRYCPSIEDKVVRFADKPCHQIFLEPEGKDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST+LPE+IQ Q +RTI GLEKV ++RPGYAIEYDY+ P +L  TLETK I GL+
Sbjct: 307 MYVQGFSTSLPEDIQIQMLRTIIGLEKVEMMRPGYAIEYDYVVPTQLKLTLETKNIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAGIN+A K  +++     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGLVAGINAALKIKEMEPFILKRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G K+G + E R + F   +Q+ + +   +    L 
Sbjct: 427 RIMTSRAEYRLLLRHDNADLRLTEKGYKIGLVDENRYRIF---VQKRDAIEKEISR--LA 481

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++N+S +        S+   +  +  +A+E L  P+ +   L  +          V E++
Sbjct: 482 NENISPSEETQRVINSVGSTELKQKISAFELLKRPEITYSVLEQLGAGIADLDEEVKEQV 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  +QM + +     E + IP+  +Y  +  LS E K+KLS ++P ++ QA 
Sbjct: 542 EIQVKYEGYIKKQMAQVERFVKMEAKTIPEWVEYEKIQGLSTEAKQKLSSIRPASIGQAG 601

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G++PA +++L++YI++   K
Sbjct: 602 RISGVSPADISVLMVYIEQQRRK 624


>gi|67540814|ref|XP_664181.1| hypothetical protein AN6577.2 [Aspergillus nidulans FGSC A4]
 gi|40738916|gb|EAA58106.1| hypothetical protein AN6577.2 [Aspergillus nidulans FGSC A4]
 gi|259480152|tpe|CBF71023.1| TPA: mitochondrial translation optimization protein (Mto1),
           putative (AFU_orthologue; AFUA_6G04440) [Aspergillus
           nidulans FGSC A4]
          Length = 700

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/624 (44%), Positives = 395/624 (63%), Gaps = 24/624 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++REID
Sbjct: 36  RPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRELY++ M+ E+L+ ENL +++G+
Sbjct: 96  AMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRELYKIYMREELLATENLSIVEGK 155

Query: 124 VAGFNTEKNIISS-----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           VA     K  + +           + ++   +I  S VV+TTGTFL G IHIG    P+G
Sbjct: 156 VADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRVVITTGTFLGGEIHIGLKAYPSG 215

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++ ++
Sbjct: 216 RIGEAATFGLSKSLREAGFQLGRLKTGTPPRLDKKTIDFSALQVQKGDMPPMPFSYLNER 275

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +    + Q+   +T TN  +H I+  N+  S      +K  GPRYCPS+E K++RF ++ 
Sbjct: 276 VQVDEDAQLNSFLTYTNNASHDIVRANLDKSVHIRETVK--GPRYCPSLESKVIRFKDKT 333

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    +V+YPNGIS  +PE+ Q + ++TI GLE V +++PGY +EYDYI+P
Sbjct: 334 QHLIWLEPEGFAPNEVIYPNGISMTIPEDAQFELLKTIRGLENVRMLQPGYGVEYDYIDP 393

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +   + +  +R+D YI
Sbjct: 394 RNLWPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGANAGLSAQGREPLTLTRSDGYI 453

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+E+R+S R DNAD RLT +  K G +G++R   F+   
Sbjct: 454 GIMIDDLITKGVSEPYRMFTARSEFRLSARSDNADLRLTRLAHKAGIVGKKRWSHFSDTE 513

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            +   L+SLL +  L     +   ++ + DG  R+A+E L++    + +L          
Sbjct: 514 AQIKELQSLLSNTKLPLAAWARKGLTVRNDGTVRSAHELLAHRAVGLDDLIPHIESPSGT 573

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
              A  F+  +  R+ +E+ YA Y  +Q   A  ++  E   IP D DY+++  +S E +
Sbjct: 574 AYTASSFAPEIRNRVIVEARYAPYVLKQDKAAARVRRYEDFPIPLDLDYNAIHGISTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAA 605
           + L  ++P N+  A +IEG+TPA 
Sbjct: 634 QALERVRPANIGMARRIEGVTPAG 657


>gi|116747555|ref|YP_844242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophobacter fumaroxidans MPOB]
 gi|205831562|sp|A0LEF5|MNMG_SYNFM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116696619|gb|ABK15807.1| glucose inhibited division protein A [Syntrophobacter fumaroxidans
           MPOB]
          Length = 642

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/617 (43%), Positives = 384/617 (62%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+G GHAGCEAA  AA++G  T +++    T+  M C+P++GG+GKGHLVREIDAL
Sbjct: 4   YEVIVVGAGHAGCEAALAAARMGCRTLVLSICLDTVAHMPCSPSVGGVGKGHLVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M  + D   IQFR+LN KKGPAV G RTQ D+  YR++M+  + S+ NLD+ Q  V 
Sbjct: 64  GGRMALITDRTAIQFRLLNTKKGPAVWGTRTQNDKARYRISMKHCLESEPNLDLKQAHVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I  ++ Q         VVL TGTFLRG++HIG   + AGR G+  S  L N 
Sbjct: 124 SLAVEGNRIVGVIDQLGVFFGADAVVLATGTFLRGLVHIGTTSVEAGRAGELASYPLANQ 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GR+KTGTPARL  ++I + +  +Q  DE   PFS  TD I   Q+ C I +T
Sbjct: 184 LQRLGFTLGRMKTGTPARLGRRSIDFSRFREQHGDEAPKPFSLFTDSIALPQVSCFIGKT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +  TH ++  +I  S +Y+G I+    RYCPS+EDK++RF +++ HQI LEPEGL+T+ V
Sbjct: 244 HQRTHELVRRHIHLSPLYNGTIRGVSARYCPSLEDKVMRFPDKDFHQIILEPEGLDTEEV 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y +G   +LP +IQ + I ++PGLE+  ++RP YAIEYD++ P +L  TL +K + GL++
Sbjct: 304 YASGTGNSLPYDIQLRLIHSVPGLEEAEVMRPAYAIEYDFVQPTQLKATLGSKLVEGLYM 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL AGIN+A K+         R+++Y+ VM+DDL ++G  EPYR
Sbjct: 364 AGQINGTSGYEEAAGQGLWAGINAALKAQGRPPFILDRSEAYLAVMVDDLVTRGTNEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLG-----CIGERRQKRFAKYIQEYNFLRSLLKS 480
           +FTSRAEYR+ LR DNAD RL   G +LG        E R++R A      N L  L  +
Sbjct: 424 IFTSRAEYRLLLREDNADLRLLEKGCELGLHSADAAKELRERRGAI----RNELERLRLT 479

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            V  S  ++ T            A   + L  P+ +   +  + P     SS V E++++
Sbjct: 480 HVRPSAQVNQTLAENHSPPLDAPAPLDKLLKRPELNYSTVAILSPPPEPLSSKVTEQVEV 539

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  RQ  E  + +  E+  IP+D  Y  +P LSNEL++KL  ++P +L QA++I
Sbjct: 540 ECKYEGYLKRQEAEVAKFRQLEQAAIPEDLMYDDIPGLSNELRQKLGAVRPLSLGQATRI 599

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTPAA+++L++++++
Sbjct: 600 PGMTPAAVSVLMVHLRR 616


>gi|304389000|ref|ZP_07371047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis ATCC 13091]
 gi|304337134|gb|EFM03321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis ATCC 13091]
          Length = 631

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSTEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|194754892|ref|XP_001959726.1| GF11898 [Drosophila ananassae]
 gi|190621024|gb|EDV36548.1| GF11898 [Drosophila ananassae]
          Length = 663

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/634 (44%), Positives = 416/634 (65%), Gaps = 32/634 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 32  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 91

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+QRE+ S  NL++    V 
Sbjct: 92  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQRELHSTPNLEIRAAAVD 151

Query: 126 GFNTEKNIISS-------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               E +   S       +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P
Sbjct: 152 NILIEDDTPDSQNRRCGGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAP 211

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
           + +L  +  +  F  GRLKTGTP R+   +I + + E+   D+  +PFSF+   +   T 
Sbjct: 212 AKALGEAIDRLGFRMGRLKTGTPPRIAKSSIDFSQLERHEGDDPPMPFSFLNKNVWIPTK 271

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++L
Sbjct: 272 EQLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWL 328

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL++ +VYP GIS  LP E Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTL
Sbjct: 329 EPEGLDSPLVYPQGISCTLPHEQQIELVHAIQGLEKAEVVQPGYGVEYDFIDPRELYPTL 388

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMID 413
           ETK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+ID
Sbjct: 389 ETKRVQGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTLHKDGKQLTISRTEGYIGVLID 448

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G   G + + R + F K  +    
Sbjct: 449 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYDFGLVSKHRYEHFRKTEER--- 505

Query: 474 LRSLLKSLVLTSKNL----SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARK 527
           L+S + SL    K+      +  +   +    +TA+E LS P  + +++ L  + P  ++
Sbjct: 506 LQSAIDSLRKLRKHTHYWRQALDLPIAKASVEKTAFEMLSIPADNITVEQLIQLHP--KE 563

Query: 528 FSSL-----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELK 581
            S L     + ER++IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE +
Sbjct: 564 LSWLADDRNLAERIKIEALYSFFVEEQQRDVEDVRREERLTIPADIDYFSKTLSLSNEER 623

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +KL++++P  +  AS+I+G+TP+ +  ++ Y+KK
Sbjct: 624 QKLTLIQPQTIAAASRIQGVTPSTIVRIMKYVKK 657


>gi|317153203|ref|YP_004121251.1| glucose inhibited division protein A [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943454|gb|ADU62505.1| glucose inhibited division protein A [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 627

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/614 (44%), Positives = 365/614 (59%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+IV+G GHAGCEAA  A++LG +T L+T     IG +SCNPAIGGL KGH+VREIDA
Sbjct: 10  SFDLIVVGAGHAGCEAAMAASRLGLATLLLTISIDRIGHLSCNPAIGGLAKGHMVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR LN +KGPAVR  R Q DR  Y   +QR +  Q+NL V Q   
Sbjct: 70  LGGMMGLWADAAGIQFRTLNTRKGPAVRSSRAQIDRAEYMRVVQRSVFGQDNLWVFQDTA 129

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +  Q    IR   V+LTTGTFL+G+IH+G      GRMGD  S  L  
Sbjct: 130 DSVLVEGGQACGVRTQLGETIRSRAVLLTTGTFLKGLIHVGLDNFSGGRMGDPASGPLSG 189

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +        GRLKTGT  RL   ++ +D+ E Q  D+   PFSF    +   Q+ C +T 
Sbjct: 190 NLRALGLTLGRLKTGTTPRLLKSSVDFDRMEAQPGDDPPKPFSFRNTTVPLPQVPCHLTY 249

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H  I      S +++G I+  G RYCPSIEDK+ RF E++ HQIF+EPEGL+   
Sbjct: 250 TNPEAHEAIRSGFDRSPMFTGVIEGTGARYCPSIEDKVARFPEKDRHQIFIEPEGLDNPE 309

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYP+GI T+LP +IQ + +  I GLE   I+RPGYAIEYDY  P +L PTLETK + GL+
Sbjct: 310 VYPSGIPTSLPLDIQKRMVAAIVGLENAQIVRPGYAIEYDYAPPTQLRPTLETKVLPGLY 369

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAAAQGL A +N   ++   +    +R  +Y+ V++DDL +KG LEPY
Sbjct: 370 LAGQINGTSGYEEAAAQGLWAALNVVCRATGREPFLPTRDQAYMAVLVDDLVTKGTLEPY 429

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR  NAD R+TP+G  LG + +   + F    +    +   L+++ + 
Sbjct: 430 RMFTSRAEHRLLLREGNADERMTPLGRDLGLVDDEHWRLFTTKRERLQSVIEALQTIRVR 489

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              ++      I     GK       L  P  SIQ+L +  P        V+   +    
Sbjct: 490 PDAVNRGIMERIGAAVPGKAVELAALLRQPQVSIQSLAAFHPALADMDEEVLTEAETRIR 549

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q       +  E   +P D DY+++  L+ E+ EKL+ ++P  L QAS+I G+
Sbjct: 550 YEGYLRKQEELVVRSRLLEDVSLPLDTDYATVSGLTREVVEKLTAIQPLTLGQASRISGV 609

Query: 602 TPAALNLLLIYIKK 615
           TPAA++ L I +KK
Sbjct: 610 TPAAISCLEIDLKK 623


>gi|308071638|ref|YP_003873243.1| glucose inhibited division protein A [Paenibacillus polymyxa E681]
 gi|305860917|gb|ADM72705.1| Glucose inhibited division protein A [Paenibacillus polymyxa E681]
          Length = 629

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/613 (45%), Positives = 383/613 (62%), Gaps = 6/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG E+A  AA++G  T +IT     +  M CNP+IGG  KGH+VREIDAL
Sbjct: 8   YDVIVVGAGHAGVESALAAARMGCRTLMITINLDMVAFMPCNPSIGGPAKGHVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+ AM+  +  + NL + QG V 
Sbjct: 68  GGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHAMKETMEKEPNLTLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L   
Sbjct: 128 ELIMEDGHCVGVITKTGTEYRSKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSLRLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C +T T
Sbjct: 188 LRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDQPKFFSYETKSSDNEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           ++ETH+II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT   
Sbjct: 248 SVETHQIINDNLHRAPMFSGLIEGTGPRYCPSIEDKVVRFSDKPKHQIFLEPEGKNTSEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+PTLETKK+ GLF 
Sbjct: 308 YVQGLSTSLPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPTLETKKVPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVVLDRSQGYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKSL 481
           + TSRAEYR+ LR DNAD RLTPIG  +G I + R +RF     K  QE   LR      
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTPIGHDIGLITDERYERFLDKKQKVEQEIERLRLAKVRP 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           V  ++ L     +  QDG        L  P+ S   +  I P     +    E+++I+  
Sbjct: 488 VDINEMLQQGGSAPIQDGSNLLT--VLRRPEISYAQVAQISPSPIALTEEEQEQVEIQIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q++  + ++  EK+ +P+D  YS +  L+ E K+KL  ++P ++ QAS+I G+
Sbjct: 546 YAGYIEKQLMHVERLQKMEKKKLPEDIVYSEVQGLAIEAKQKLEKIRPMSIGQASRISGV 605

Query: 602 TPAALNLLLIYIK 614
           TPA +++LL+Y++
Sbjct: 606 TPADISILLVYLE 618


>gi|296274537|ref|YP_003657168.1| glucose inhibited division protein A [Arcobacter nitrofigilis DSM
           7299]
 gi|296098711|gb|ADG94661.1| glucose inhibited division protein A [Arcobacter nitrofigilis DSM
           7299]
          Length = 630

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/619 (45%), Positives = 385/619 (62%), Gaps = 14/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA+  +A++G  T L+T     IG+ SCNPAIGGL KGHLVRE+DAL
Sbjct: 3   YDVIVVGGGHAGIEASLASARMGKKTLLVTMLVEQIGAASCNPAIGGLAKGHLVRELDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D+AGIQFR+LN  KG AV+G R Q D + YR  M++   + ENL++ Q EV+
Sbjct: 63  GGEMGLCTDSAGIQFRILNASKGAAVQGSRAQIDMDRYRTYMRKVCHNTENLEIYQDEVS 122

Query: 126 GFNTEKN---IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
              T+      +  +  +         V+LTTGTF++G+IHIG     AGR  + PS++L
Sbjct: 123 SLLTKDENGLEVCGVKTKLGEEFESKKVILTTGTFMKGLIHIGTSTYDAGRAWELPSSTL 182

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
                +F  + GRLKTGTPAR+D K+I + K E+   DE+  PFSF TDK T   +Q  C
Sbjct: 183 STQLKEFGLNVGRLKTGTPARIDAKSINFSKMEEHGGDEKPTPFSFRTDKSTFNPKQHPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNL TH  I  N   + +++G IK  GPRYCPSIEDK+ RF ER+ HQ+FLEP+  
Sbjct: 243 YITYTNLGTHGKISSNFHRAPLFTGQIKGSGPRYCPSIEDKVNRFSERDRHQLFLEPQTA 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST++P ++Q + I +I GLE   I+R GYAIEYDY++P EL  TLETKK+
Sbjct: 303 MATEYYINGLSTSMPIDVQKEMIHSIAGLENAKIVRYGYAIEYDYVDPTELKHTLETKKV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQIN TTGYEEAA+QGL+AGIN++   +  + +   R ++YIGV+IDDL +KG 
Sbjct: 363 KNLYHAGQINATTGYEEAASQGLMAGINASLAIDNKEPLILRRDEAYIGVLIDDLVTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA---KYIQEYNFLRSL 477
            EPYRMFTSRAEYR+ LR + AD RL+  G K+G I +   ++     K I+E       
Sbjct: 423 AEPYRMFTSRAEYRLLLREEGADIRLSEYGHKIGLINDETIQKVQYKEKCIKE---AIDF 479

Query: 478 LKSLVLTSK--NLSSTSISFKQDGKTRT-AYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +K    TSK  NL       +   K R    + +     + +N   +CP  ++  + + E
Sbjct: 480 MKEEWFTSKKENLELLEKLGQDKIKDRVLLLDIVGRNGVTTENFDELCPQFKELDNYIKE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ IE+ Y  Y  +Q  + +++K   +  IP+ FDY  +P LSNE  EKL   +P  L  
Sbjct: 540 QIIIEAKYYRYVEKQQKQIEKMKKMIQLKIPESFDYKEIPGLSNEAIEKLEKFRPPTLFN 599

Query: 595 ASKIEGMTPAALNLLLIYI 613
           A +I G+TPAA++++ +YI
Sbjct: 600 AGEISGITPAAVDVIHLYI 618


>gi|145614278|ref|XP_364007.2| hypothetical protein MGG_08852 [Magnaporthe oryzae 70-15]
 gi|145021212|gb|EDK05341.1| hypothetical protein MGG_08852 [Magnaporthe oryzae 70-15]
          Length = 1186

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/638 (44%), Positives = 402/638 (63%), Gaps = 32/638 (5%)

Query: 1    MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +  RS+DV+VIGGGHAG EA   AA+ GA TAL+T K   +G+ SCNP+IGG+GKG ++R
Sbjct: 531  LATRSFDVVVIGGGHAGAEACVAAARAGARTALVTPKMDNLGTCSCNPSIGGIGKGTMIR 590

Query: 61   EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            EIDALDGL GRV D AG+QF+VLN KKGPAV GPR Q DRELY+  M+ E+LS  NLDV+
Sbjct: 591  EIDALDGLAGRVVDKAGVQFKVLNRKKGPAVWGPRAQIDRELYKKHMREELLSYPNLDVV 650

Query: 121  QGEV----AGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               V     G N +     K  I  + +     IR + VV+TTGTFL G IHIG    P+
Sbjct: 651  LDSVDDIIVGENPDPSTGAKGKIQGVRLASGEEIRTNQVVITTGTFLGGEIHIGLEAFPS 710

Query: 172  GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            GRMG++ +  L  S     F  GRLKTGTP RLD K+I +   ++   DE  +PFSFM D
Sbjct: 711  GRMGEAATFGLSKSLRDAGFQLGRLKTGTPPRLDKKSIDFGILQEHGGDEPPMPFSFMND 770

Query: 232  KITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             +  + Q+ C +T TN  +H ++  N+  +      +K  GPRYCPS+E K++RF +R+ 
Sbjct: 771  SVAVKDQLLCHMTYTNQASHDVVRANLDKTIHIRETVK--GPRYCPSLEAKVIRFPQRDS 828

Query: 291  HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
            H ++LEPEG +TDV+YPNG+S  +P   Q + +RTI GLE V +++PGY +EYDY++P+ 
Sbjct: 829  HVVWLEPEGFDTDVIYPNGLSMTIPAAAQEELLRTIVGLENVKMLQPGYGVEYDYVDPRS 888

Query: 351  LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
            L  +LETK ISGLFLAGQINGTTGYEEAA QG+VAGIN+ R +  L     +R D YIG+
Sbjct: 889  LKLSLETKAISGLFLAGQINGTTGYEEAAGQGIVAGINAGRAAMGLPAATLTRADGYIGI 948

Query: 411  MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            MIDDL +KGV EPYRMFTSR+E+R+S R DNAD+RLT  G   G + + R   F    ++
Sbjct: 949  MIDDLVTKGVSEPYRMFTSRSEFRMSTRADNADSRLTARGRAWGVVSDSRWASFESEREQ 1008

Query: 471  YNFLRSLLKSLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPD---- 524
               L  +L S+   ++       S+++DG    R++   ++  D  ++    I  D    
Sbjct: 1009 IAELTEVLASVAQGAE-------SWQRDGFQSVRSSSSPINGLDI-VRRGVDIASDNGVL 1060

Query: 525  ARKFSSL------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
            A+KF +L      + ER+ +E++YA Y  + +        +E  ++P D DY ++  +S 
Sbjct: 1061 AKKFPNLHKYPRRIRERVAVEAAYAPYVEKDVRIRDRALRDEGLILPPDIDYDTVSGISI 1120

Query: 579  ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
              ++ L  ++P  + Q  ++EGMTPA    LL+Y+++N
Sbjct: 1121 AERQALMAIRPETMGQVKRLEGMTPAGAFNLLLYLRRN 1158


>gi|332187044|ref|ZP_08388785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas sp. S17]
 gi|332013054|gb|EGI55118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas sp. S17]
          Length = 572

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/574 (44%), Positives = 365/574 (63%), Gaps = 7/574 (1%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGH+VRE+DA DGL+GR AD   I +R+LN  KG AV+GPR QADR  Y
Sbjct: 1   MSCNPAIGGLGKGHIVREVDAFDGLIGRAADEGAIHYRMLNRSKGTAVQGPRVQADRRRY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
             A+Q  + +Q  L +++GE      + + ++ + + D + +    VVL TGTFL G + 
Sbjct: 61  AGAIQAILAAQPKLTIVEGEAEALVLDGDRVAGVQLADGTTLAARAVVLATGTFLGGRLF 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
            G+ +   GR+G+  +  +            R+KTGTP RLDG+TI W K ++Q +D   
Sbjct: 121 RGEERHLGGRIGERAATRMAEQLRALGLPMARMKTGTPPRLDGRTIDWAKLDEQPSDSDP 180

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
              S MT      QI C ITRT  ETH II      S +++G I++ GPRYCPSIEDKI 
Sbjct: 181 WTMSPMTAARPLPQIACAITRTTEETHAIIAAAFHRSPLFTGAIEANGPRYCPSIEDKIK 240

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF +R+ HQIFLEPEGL+  +VYPNG+ST+LP ++Q   I ++PGLE+  I  PGYA+EY
Sbjct: 241 RFADRDSHQIFLEPEGLDDPLVYPNGLSTSLPTDVQEAMIASMPGLERAVITLPGYAVEY 300

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           D+I+P+ L   L    ++G+F AGQINGTTGYEEAA QGL+AG+N+A  +     +   R
Sbjct: 301 DHIDPRALDARLALGALAGVFCAGQINGTTGYEEAAGQGLIAGLNAAAHACDWAPVILDR 360

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             SY+GVMIDDL  +GV EPYRM T+RAEYR+SLR DNA++RL  I    GC+   R   
Sbjct: 361 ASSYLGVMIDDLVLQGVTEPYRMLTARAEYRLSLRADNAESRLGGIAEAAGCLSPERLAH 420

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
             + +++   LR  L + V T+ +L+ +  +  QDG  RTAYE+L +   ++ +   + P
Sbjct: 421 RQRRLEQRTVLRDRLAT-VRTASDLARSGAAIAQDGARRTAYEWLRFDGVTLAH---VVP 476

Query: 524 DARKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
           DA      ++V E L+ ++ YA Y  RQ  E   ++ +E+ L+P   DY+++P LS E+ 
Sbjct: 477 DAADGLDPAVVAETLE-DARYAPYVERQAEEVARLRADEQILLPISLDYAAIPGLSQEMI 535

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++LS+ +P  L  AS+I G+TPAAL+ +L++ +K
Sbjct: 536 DRLSLARPATLAAASRIRGITPAALSAVLLHARK 569


>gi|261190947|ref|XP_002621882.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis SLH14081]
 gi|239590926|gb|EEQ73507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis SLH14081]
          Length = 698

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/636 (44%), Positives = 396/636 (62%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKNI--------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIVVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG    +V+YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICPDARK--- 527
             L++LL++    S   +    +   D   R+A++ L   D SI ++   I P + K   
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHNPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 528 ------FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|324507225|gb|ADY43066.1| Unknown [Ascaris suum]
          Length = 658

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/626 (45%), Positives = 391/626 (62%), Gaps = 18/626 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGGHAGCEAA  AA+ G ST L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA+D
Sbjct: 21  DVIVVGGGHAGCEAATAAARTGVSTVLLTHRQDTIGEMSCNPSFGGIGKGHLIREVDAMD 80

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGEVA 125
           G+ GR+ D   I ++ LNV +GPAV G R Q DR LY+  M++EI+    NL VI+G V 
Sbjct: 81  GVCGRICDQTAITYQALNVGQGPAVLGLRAQIDRSLYKRHMRKEIVENTPNLRVIEGAVE 140

Query: 126 GFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E+       ++ + ++D  M+   +VV+TTGTFL G I  G  K PAGR+G+  S 
Sbjct: 141 DLAIERAEDGSLCVAGVRLEDGRMLLSKSVVITTGTFLGGQIFRGMKKYPAGRIGEKSST 200

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            L  +  +  F  GRL+TGTP RL  +TI ++K      D + IPFSF+TD++    + Q
Sbjct: 201 GLSKTLNELGFKLGRLRTGTPPRLLKRTIDFNKFTTMLPDRKPIPFSFLTDRVWLDPSEQ 260

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +   ++ TN    +++ +N  ++     +  + GPRYCPS+E KI++F   + H+IFLE 
Sbjct: 261 LPTYLSYTNDRVAQLVHDNFHNNEYIRSE--ANGPRYCPSLEAKILKFANMH-HRIFLEH 317

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL ++++YP G+S     E+Q Q +R IPGLE V I   GY +EYD++NP++L P+LET
Sbjct: 318 EGLESELIYPQGMSMTFQPEVQLQIMRAIPGLENVEITEAGYGVEYDFVNPQQLHPSLET 377

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L  AGQINGTTGYEEAAAQG+VAGIN++  S   +C+   RT+ YIGV+IDDLTS
Sbjct: 378 KVVKRLLFAGQINGTTGYEEAAAQGVVAGINASALSRGKECLLIDRTEGYIGVLIDDLTS 437

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE+R+ LRPDNAD RLT    + G + E R  RF    ++++   +L
Sbjct: 438 LGTSEPYRMFTSRAEFRLHLRPDNADMRLTEKAYRAGAVSEHRYARFCTMRRKFDDAVAL 497

Query: 478 LKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF--SSL 531
           LKS+ +       +   F   K  GK   AYE L   D S++ L +  P+   KF     
Sbjct: 498 LKSIEMPISRWIQSLPRFTTKKGGGKVLNAYEMLHRFDISMEQLATAFPNELNKFVGDEQ 557

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +  R++ E  YA    R     +E++ E   LIP++ DYS++  LS E KEK    +P N
Sbjct: 558 LESRIKNEGIYAQQHERLTARMEEVRRECATLIPENTDYSTMDGLSFECKEKFETWRPQN 617

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNT 617
           L  AS+I G+TP AL +LL Y+K  T
Sbjct: 618 LAAASRIPGITPEALCILLRYLKTPT 643


>gi|329942441|ref|ZP_08291251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila psittaci Cal10]
 gi|332287082|ref|YP_004421983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci 6BC]
 gi|313847678|emb|CBY16666.1| putative division protein a [Chlamydophila psittaci RD1]
 gi|325506475|gb|ADZ18113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci 6BC]
 gi|328815351|gb|EGF85339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila psittaci Cal10]
 gi|328914316|gb|AEB55149.1| glucose-inhibited division protein A [Chlamydophila psittaci 6BC]
          Length = 611

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 384/619 (62%), Gaps = 22/619 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  +++    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILSSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESCPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGIAYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSL 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F   ++       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGDPG-VGFVHRSEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG++T
Sbjct: 246 THTTEKTKEIIAANIHRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDMIRSVRGLENAIITRPAYAIEYDYVHGNVIYPTLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFVPSRQESYIGVMLDDLTTQILDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKS 480
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F   K I E   LR     
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGHDLGLLSKERYEIFEHQKQIIEEEKLR----- 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQI 538
                  LS T   FK+ G +  +  + L  P+ S   L    P D R + S +   L++
Sbjct: 481 -------LSKT---FKKYGNSVVSLAKALCRPEVSYDALKEAFPEDVRDYGSTLNASLEM 530

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I
Sbjct: 531 EIKYAGYIDRQKALIHSLSKSENMIIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRI 590

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G+  A + +L++ +KK+ 
Sbjct: 591 SGIACADIQVLMVAVKKHA 609


>gi|239613167|gb|EEQ90154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis ER-3]
          Length = 698

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/636 (44%), Positives = 396/636 (62%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKNI--------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIIVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG    +V+YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGAVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICPDARK--- 527
             L++LL++    S   +    +   D   R+A++ L   D SI ++   I P + K   
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHNPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 528 ------FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|327354760|gb|EGE83617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 698

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/636 (44%), Positives = 396/636 (62%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKNI--------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIIVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG    +V+YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARK--- 527
             L++LL++    S   +    +   D   R+A++ L   D SI ++   I P + K   
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHSPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 528 ------FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|240124404|ref|ZP_04737360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID332]
          Length = 642

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 389/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 554

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 555 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 614

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 615 QASRISGVTPAAVALLMVHLKR 636


>gi|121634068|ref|YP_974313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis FAM18]
 gi|120865774|emb|CAM09503.1| glucose inhibited division protein A [Neisseria meningitidis FAM18]
          Length = 631

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSADMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|115386316|ref|XP_001209699.1| mitochondrial translation optimization protein [Aspergillus terreus
           NIH2624]
 gi|114190697|gb|EAU32397.1| mitochondrial translation optimization protein [Aspergillus terreus
           NIH2624]
          Length = 685

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/635 (44%), Positives = 387/635 (60%), Gaps = 23/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+   E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELTGTEGLSIVEG 154

Query: 123 EVAGFNTEKNIISSIV----------MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K  I  I           ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVVITTGTFLGGEIHIGLKVFPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDKKTINFAALEVQRGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN   H II  N+  S      ++  GPRYCPS+E KI+RF +++
Sbjct: 275 VQVGDEGQLTCWMTHTNEAAHDIIRANLDKSVHIRETVR--GPRYCPSLESKIIRFKDKH 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+P+LETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPSLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRPPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +  K G + ++R   F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARKAGIVSDKRWHHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            +   L++LL +  ++S   S      + D   R+A + L   +  +  L         +
Sbjct: 513 AQIQELQTLLANTRMSSSAWSRRGFKARTDTSIRSALDLLCLDEVDVDALIPHIESPSGV 572

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ   A++   +E  L+P   DYS +  +S E +
Sbjct: 573 AYTPASFAPEIRTRVAIERRYAPYIARQETAARKFLQDENLLLPAGLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + L  ++P ++  A +IEG+TPA    LL +++K+
Sbjct: 633 QALERVRPLSVGMARRIEGVTPAGALRLLAHVRKH 667


>gi|269302401|gb|ACZ32501.1| glucose-inhibited division protein A [Chlamydophila pneumoniae
           LPCoLN]
          Length = 611

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/621 (45%), Positives = 380/621 (61%), Gaps = 26/621 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   AYDVIVVGAGHAGCEAAYCSAKMGASVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M+R + +   L ++Q  V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLENTPGLHIMQATV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++ +IS +  ++  M    TVVL++GTF+RG+IHIG      GR+GD  S  L  
Sbjct: 127 ESLLDKEGVISGVTTKEGWMFSGKTVVLSSGTFMRGLIHIGDRNFSGGRLGDPSSQGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIPFSFMTDKITNRQI 238
              K  F   RLKTGTP RL   +I +   E+Q  D       R  PF     +    Q+
Sbjct: 187 DLKKRGFPISRLKTGTPPRLLASSINFSCMEEQPGDLGVGFVHRTEPF-----QPPLPQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T  +T  II  N+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H +FLEPE
Sbjct: 242 SCFITHTTEKTKEIISANLHRSALYGGCIEGVGPRYCPSIEDKIVKFSDKERHHVFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  +Y NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDYI+   + PTLE+K
Sbjct: 302 GLHTQEIYANGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYIHGNVIHPTLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLFL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++
Sbjct: 362 LIEGLFLCGQINGTTGYEEAAAQGLIAGINAVNKVFNKPPFIPSRQESYIGVMLDDLTTQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            + EPYRMFT RAE+R+ LR DNA  RL+  G +LG + E R +   K  Q         
Sbjct: 422 ILDEPYRMFTGRAEHRLLLRQDNACARLSHYGYELGLLSEERYELVKKQNQ--------- 472

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
               L  +       +F+Q G++  +  + LS P+ S   L    P D R   +++   L
Sbjct: 473 ----LLEEEKVRLQKTFRQYGQSVVSLAKALSRPEVSYDMLREAFPNDIRDLGTVLNASL 528

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++E  Y+ Y  RQ I  + ++  E  LIP+D DY  + ALS E +EKL+   P  L  AS
Sbjct: 529 EMEIKYSGYIDRQKILIQSLEKAESLLIPEDLDYKQITALSLEAQEKLAKFTPRTLGSAS 588

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+  A + +L+I +KK+ 
Sbjct: 589 RISGIASADIQVLMIALKKHA 609


>gi|205375718|sp|A1KRM5|MNMG_NEIMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 628

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSADMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|222530700|ref|YP_002574582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457547|gb|ACM61809.1| glucose inhibited division protein A [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 628

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/616 (44%), Positives = 387/616 (62%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      ++G+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSVGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ Q EV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQAEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + +G+    +G  G  P+  L  +
Sbjct: 128 EVLVEDGRVKGVKITTGAVFLAKAVVLATGTFLGGRVIVGETVFDSGPDGMHPARYLTEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T 
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIEQVPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP G++TD 
Sbjct: 248 TTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGIDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 308 MYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G I    Q+R+ K++Q+   +    + +K+ 
Sbjct: 428 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLIS---QQRYEKFLQKKKMIEDEINRVKNT 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++      +  +  K      T     + L  P+ S ++L  I  +       V + ++I
Sbjct: 485 IIAPSEKVNKLLLQKGSSPISTGVRLSDLLKRPELSYEDLKEIDINRPDLPWYVQDEVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+   ++ K  E + IP+  DY+ +  LS E K+KLS +KP ++ QAS+I
Sbjct: 545 EIKYEGYIKKQLERIEQFKKLENKKIPEWVDYNKIAGLSTEAKQKLSQIKPASIGQASRI 604

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 605 SGVSPADISVLLIWLE 620


>gi|62184767|ref|YP_219552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila abortus S26/3]
 gi|81170534|sp|Q5L6Z0|MNMG_CHLAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62147834|emb|CAH63580.1| putative division protein a [Chlamydophila abortus S26/3]
          Length = 611

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/619 (45%), Positives = 384/619 (62%), Gaps = 22/619 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  +++    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILSSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESSPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGITYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSL 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F   ++       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGDPG-VGFVHRSEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG++T
Sbjct: 246 THTTEKTKDIIAANIHRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYVHGNVIYPTLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFIPSRQESYIGVMLDDLTTQILDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKS 480
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F   K I E   LR     
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLSKERYEIFENQKQIIEEEKLR----- 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQI 538
                  LS T   FK+ G +  +  + L  P+ S   L    P D R + S +   L++
Sbjct: 481 -------LSKT---FKKYGNSVVSLAKALCRPEVSYDTLREAFPEDIRDYGSTLNASLEM 530

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I
Sbjct: 531 EIKYAGYIDRQKALIHSLSKSENMVIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRI 590

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G+  A + +L++ +KK+ 
Sbjct: 591 SGIACADIQVLMVAVKKHA 609


>gi|268683031|ref|ZP_06149893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID332]
 gi|268623315|gb|EEZ55715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID332]
          Length = 631

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 389/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|312136219|ref|YP_004003557.1| glucose inhibited division protein a [Caldicellulosiruptor
           owensensis OL]
 gi|311776270|gb|ADQ05757.1| glucose inhibited division protein A [Caldicellulosiruptor
           owensensis OL]
          Length = 628

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/616 (44%), Positives = 386/616 (62%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ Q EV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRYRYRLYMKRVLENQENLDIRQAEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  +
Sbjct: 128 DVLVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGQTIFDSGPDGMHPARYLTEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + + + Q  D + +PFSF   D     Q+ C +T 
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRRSLDFSQMQIQPGDLKPLPFSFENEDNFNIEQVPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+II EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD 
Sbjct: 248 TTEETHKIIRENLHRAPLFTGIISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGLDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 308 MYVQGMSTSLPEDVQIKMYRSVIGLENVKIMRPAYAIEYDCINPIQLEPTLQFKKIKGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G +     +R+ K++Q+   +    + +K+ 
Sbjct: 428 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLVS---SQRYEKFLQKKKMIEDEINRVKNT 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+      +  +  K      T     + L  P+ S ++L  I PD       V + ++I
Sbjct: 485 VIAPSEKVNKFLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPDRPDLPWYVQDEVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+ + ++ K  E + IP   DY+ +  LS E K+KLS ++P ++ QAS+I
Sbjct: 545 EIKYEGYIKKQLAQIEQFKKLENKKIPDWVDYNQILGLSTEAKQKLSQIRPASIGQASRI 604

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 605 SGVSPADISVLLIWLE 620


>gi|268604574|ref|ZP_06138741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID1]
 gi|268588705|gb|EEZ53381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID1]
          Length = 631

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|224372353|ref|YP_002606725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nautilia profundicola AmH]
 gi|223588715|gb|ACM92451.1| glucose-inhibited division protein A [Nautilia profundicola AmH]
          Length = 623

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/615 (44%), Positives = 377/615 (61%), Gaps = 5/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA   A++G    L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   KEFDVIVVGGGHAGIEAALAPARMGKKVLLLTMLVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN  +GPAVRG R Q D + YR+ M+   L+  NL V Q  
Sbjct: 62  ALGGEMALATDHAGIQFRVLNENRGPAVRGSRAQIDMDRYRIYMRTVCLNTPNLTVAQEI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  +     +  +   ++LTTGTF+RG++H G +K+  GR  + P+  + 
Sbjct: 122 VDEILVKNGKVVGVKTNLLNEYKTKALILTTGTFMRGIMHFGPVKLEGGRFHELPAKKIS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S     F   RLKTGT AR+D +TI + K E Q  DE   PFSF TDK T    Q+ C 
Sbjct: 182 KSLEDLGFKLERLKTGTTARIDARTIDFSKMEIQPGDENPKPFSFRTDKKTFNPTQLPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N   + +++G I+  GPRYCPSIEDK+ +F ++  H +F+EP+ L 
Sbjct: 242 ITYTNENTHDIIKSNFHRAPLFTGQIEGVGPRYCPSIEDKLNKFPDKERHHVFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q  FI +IPGLE   I+R GYAIEYD+I P  L  +LETK+I 
Sbjct: 302 ATEYYLNGLSTSLPMDVQEDFIHSIPGLENAKIVRFGYAIEYDFIQPTNLKHSLETKEIE 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+A K +  + I F R ++YIGV+IDDL +KG  
Sbjct: 362 GLFFAGQINGTTGYEEAAAQGIMAGINAALKIDGKEPIIFRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+ LR DNA  RL   G +LG + ++  +R  K  +E N    +L   
Sbjct: 422 EPYRMFTSRSEYRLLLREDNAILRLADYGYELGILDDKTYERVQKLREEINRGMKILNET 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYP---DFSIQNLFSICPDARKFSSLVIERLQI 538
            +T     +  +    + K ++  E         F+ + L  + P+ + FS   +E++ I
Sbjct: 482 FVTPNKQINAMLEEMGEEKIQSKMEIRKIAGRHTFNREKLLKLAPEFKDFSEDALEQILI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  RQ  +  ++K      IP+DF+Y  +P LS E+ EKL   +P  L  AS+I
Sbjct: 542 DARYHHYIERQKAQIDKMKEMLSVKIPEDFEYKGIPGLSREIVEKLEKFRPPTLFAASEI 601

Query: 599 EGMTPAALNLLLIYI 613
            G+TPAA++++ +YI
Sbjct: 602 SGVTPAAIDIIHMYI 616


>gi|146418878|ref|XP_001485404.1| hypothetical protein PGUG_03133 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 703

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/646 (42%), Positives = 402/646 (62%), Gaps = 32/646 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIGGGHAGCEAA  +A+ G  T LIT   S IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 55  HPVVVIGGGHAGCEAATGSARSGTPTTLITPDISKIGTASCNPSMGGVGKGTLLREVDAL 114

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  ++ D AGI F++LN  KG AV GPR Q DR +Y   MQ+ IL+  NL V++ EV 
Sbjct: 115 DGVALKITDKAGIHFKILNASKGAAVHGPRAQIDRSIYLKEMQKTILNYPNLTVLEAEVK 174

Query: 126 GF---NTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                + E N           I  +V+ D+ ++ CS VV+TTGTFL   IHIG    PAG
Sbjct: 175 DIIIEDVETNSSDFTGRKYGSIVGVVLGDSRVLSCSKVVVTTGTFLSAEIHIGLESFPAG 234

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  +F +  F  GRLKTGTP RL  +TI ++   +Q +D    P S+M+ K
Sbjct: 235 RMGENATFGLSKTFKEAGFRLGRLKTGTPPRLSSRTIRYEGLSEQKSDYPPAPMSYMSLK 294

Query: 233 I--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   ++ + C IT T  E H++I +N+  S      +K  GPRYCPSIE KI++F ++  
Sbjct: 295 VDLQDQLVSCHITFTTAEMHKLIADNLDKSIHIKETVK--GPRYCPSIESKIIKFPQKTS 352

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD+VYPNGIS  +P E+Q + ++ +PG E V +++PGY +EYD+++P+E
Sbjct: 353 HMVWLEPEGLDTDLVYPNGISCTMPHELQEKLVKLMPGCEDVKMVQPGYGVEYDFVDPRE 412

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+         +   R+D Y+GV
Sbjct: 413 LRQTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLSLAGKPPLIVQRSDGYLGV 472

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R K +   +  
Sbjct: 473 LVDDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLTEKGYLAGVVSEERYKHYKNEMNN 532

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA----YEFLSYPDFSIQNLFSICPD-- 524
           ++ ++S L+S+ L+    +      + D   RTA    ++ LSY D  ++ L    P   
Sbjct: 533 FDAIKSFLQSVSLSGARWAPALKGTELD-VNRTAVVDGWKLLSYRDVDLELLMKSLPQIV 591

Query: 525 ---ARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL-- 576
                 F S+   ++ R+ +ES+Y  +  ++    +  K +E  L+PK+F Y++   L  
Sbjct: 592 GDLPPVFDSINPRLLNRIDVESTYEPWMKKEEAHLRAYKADENLLLPKNFVYNNEGNLKI 651

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L +
Sbjct: 652 SYEVCHLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQSQLAQ 697


>gi|240017490|ref|ZP_04724030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA6140]
 gi|240118867|ref|ZP_04732929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID1]
 gi|260439595|ref|ZP_05793411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae DGI2]
          Length = 642

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/618 (45%), Positives = 388/618 (62%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 619 ISGVTPAAVALLMVHLKR 636


>gi|312623583|ref|YP_004025196.1| glucose inhibited division protein a [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312204050|gb|ADQ47377.1| glucose inhibited division protein A [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 628

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/616 (44%), Positives = 387/616 (62%), Gaps = 10/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG  T +      ++G+M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSVGNMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLDV Q EV 
Sbjct: 68  GGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDVRQAEVC 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  +
Sbjct: 128 EVLVEDGRVKGVKITTGAVFLAKAVVLATGTFLGGRVIIGETVFDSGPDGMHPARYLTEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
             K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T 
Sbjct: 188 LKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFIIEQVPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP G++TD 
Sbjct: 248 TTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGIDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GLF
Sbjct: 308 MYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+ TSRAEYR+ LR DNAD RLT IG K+G I    Q+R+ K++Q+   +    + +K+ 
Sbjct: 428 RIMTSRAEYRLILRQDNADLRLTEIGYKIGLIS---QQRYEKFLQKKKMIEDEINRVKNT 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++      +  +  K      T     + L  P+ S ++L  I  +       V + ++I
Sbjct: 485 IIAPSEKVNKLLLQKGSSPISTGVRLSDLLKRPELSYEDLKEIDINRPDLPWYVQDEVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+   ++ K  E + IP+  DY+ +  LS E K+KLS ++P ++ QAS+I
Sbjct: 545 EIKYEGYIKKQLERIEQFKKLENKKIPEWVDYNKIAGLSTEAKQKLSQIRPASIGQASRI 604

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +++LLI+++
Sbjct: 605 SGVSPADISVLLIWLE 620


>gi|302892829|ref|XP_003045296.1| hypothetical protein NECHADRAFT_100996 [Nectria haematococca mpVI
            77-13-4]
 gi|256726221|gb|EEU39583.1| hypothetical protein NECHADRAFT_100996 [Nectria haematococca mpVI
            77-13-4]
          Length = 1205

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 398/627 (63%), Gaps = 15/627 (2%)

Query: 3    NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +R +DV+VIGGGHAG EA A AA+ GA TALIT K   +G+ SCNP+ GG+GKG ++REI
Sbjct: 571  HRPFDVVVIGGGHAGAEACAAAARAGARTALITPKVDNLGTCSCNPSFGGIGKGTIIREI 630

Query: 63   DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            DALDGL GR+ D AG+QF VLN +KG AV GPR Q DR+LY+  M+ E+ S  NL ++  
Sbjct: 631  DALDGLAGRIIDKAGVQFHVLNRRKGAAVWGPRAQIDRDLYKKYMREELSSYPNLSIVLD 690

Query: 123  EVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             V+          +   + I+ + ++   ++  S V++TTGTFL G IHIG    PAGR+
Sbjct: 691  SVSDIVLSDQEPVDGASSRIAGVRLESGQVLPTSKVIITTGTFLGGEIHIGLECYPAGRI 750

Query: 175  GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            G++ +  L  S     F  GRLKTGTP R+   +I +D  EKQ+ D+   PFS++ D + 
Sbjct: 751  GEAATFGLSKSLRDAGFQLGRLKTGTPPRIARDSIKFDILEKQYGDDPPSPFSYLNDTVA 810

Query: 235  -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               Q+ CG+T TN +TH+I+ +N++ +      IK  GPRYCPS+E K++RF +++ H +
Sbjct: 811  VEEQLTCGVTYTNEKTHQIVRDNLEKTIHIRETIK--GPRYCPSLESKVIRFADKDRHIV 868

Query: 294  FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            +LEPEG ++ +VYPNG+S  +P E Q Q +RTIPGLE   +++PGY +EYDYI+P+ L  
Sbjct: 869  WLEPEGFDSPIVYPNGLSMTIPAEAQEQALRTIPGLEDSKMLQPGYGVEYDYIDPRGLRS 928

Query: 354  TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR D YIG+M+D
Sbjct: 929  TLETKAISGLYLAGQINGTTGYEEAAGQGVLAGINAGRAAKGLPGVSLSRGDGYIGIMVD 988

Query: 414  DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            DL +KGV EPYRMFTSR+E+R++ R DNAD RLT  G + G I ++R   ++   Q+ + 
Sbjct: 989  DLITKGVTEPYRMFTSRSEFRMAARADNADFRLTSKGHEWGVISDKRWSVYSDERQQMDD 1048

Query: 474  LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL----SYPDFSIQNLFSICPDARKFS 529
            L   L+S+ L+           K++   R   + L    S     ++ L S+ PD   +S
Sbjct: 1049 LTKALRSVSLSPAQWIEKGFHLKRNTARRDGLDMLRLSSSNTRIELEQLVSVVPDIMNYS 1108

Query: 530  SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              V  R+ IE+ YA Y   Q  E  +   +E+  IP   DY  +P L+   KE L + +P
Sbjct: 1109 PRVRSRVAIEAFYAPYIKMQEAERSQFTNDERVRIPTSLDYDEIPGLAISEKEALKVARP 1168

Query: 590  FNLLQASKIEGMTPAALNLLLIYIKKN 616
              L QA ++EG+TP+    LL Y+++N
Sbjct: 1169 ETLAQARRVEGVTPSGSLRLLAYVRRN 1195


>gi|254805763|ref|YP_003083984.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha14]
 gi|254669305|emb|CBA08296.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha14]
          Length = 642

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 555

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 556 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 615

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 616 ASRISGVTPAAVALLMVHLKR 636


>gi|239907242|ref|YP_002953983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio magneticus RS-1]
 gi|239797108|dbj|BAH76097.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio magneticus RS-1]
          Length = 623

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/618 (45%), Positives = 373/618 (60%), Gaps = 3/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + ++D+IVIG GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VR
Sbjct: 1   MTSMTFDIIVIGAGHAGCEAAMAAARLGHKTLLLTQNVDRIGHLSCNPAIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MG  ADAAGIQFR LN  KGPAVR  R Q DR+ Y   ++R++ +QENL V 
Sbjct: 61  EIDALGGMMGLWADAAGIQFRTLNTSKGPAVRATRAQIDRDEYMRVVKRDVFAQENLTVR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E   +S + +    +     V++TTGTFL G+IHIG  ++  GR+GD PS+
Sbjct: 121 QDSAEDILAEAGRVSGLRVASGEIFATRAVIVTTGTFLGGLIHIGLTQLRGGRLGDPPSD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  +     GRLKTGT  RL  K+I +  T  Q  D     FSF        Q+ C
Sbjct: 181 GLPASLRRHGLIFGRLKTGTTPRLLAKSIDFSVTVPQPGDTPPPGFSFHGPGPVLPQVPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH  I    + S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL
Sbjct: 241 YLTHTNARTHEAIRAGFERSPLFTGVIQGTGARYCPSVEDKVARFPERDRHHVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +YPNGIST+LP E Q   I TIPGLE   I+RPGYAIEYDY +P +L PTLETK +
Sbjct: 301 ESPEIYPNGISTSLPIETQKAMIATIPGLENAVIVRPGYAIEYDYADPVQLSPTLETKAL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEAAAQGL A +N+    +        R  +Y+ V++DDL +KG 
Sbjct: 361 PGLYLAGQINGTSGYEEAAAQGLWASLNACLALSGRPPFLLRRDQAYMAVLVDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLK 479
            EPYRMFTSRAE+R+ LR  NAD RLT +G ++G +GE +  R+ AK       L  L +
Sbjct: 421 SEPYRMFTSRAEHRLLLREGNADARLTALGREIGLVGEAQWARYQAKEASIAQALAGLAE 480

Query: 480 SLVLTS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             V      + +  ++  K   ++    E L  P  ++ +LF   P+  +  +      +
Sbjct: 481 RRVRPGDCDDAAWEALGGKPAERSLRLDELLRRPAVTLPDLFRFWPELAELPAEAAVEAE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               Y  Y  RQ   A      E   +P+D DY+++  LS E+ EKL  + P +L QAS+
Sbjct: 541 TRVKYDGYLKRQEELAGRAGRHEGVELPQDLDYAAVAGLSREVVEKLIRVAPRSLGQASR 600

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++ L I++KK
Sbjct: 601 ISGVTPAAVSCLEIHLKK 618


>gi|194099972|ref|YP_002003111.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae NCCP11945]
 gi|193935262|gb|ACF31086.1| glucose-inhibited division protein A [Neisseria gonorrhoeae
           NCCP11945]
          Length = 655

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/619 (46%), Positives = 389/619 (62%), Gaps = 8/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+E++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVVEQV 570

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS
Sbjct: 571 EIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQAS 630

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA+ LL++++K+
Sbjct: 631 RISGVTPAAVALLMVHLKR 649


>gi|103488331|ref|YP_617892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingopyxis alaskensis RB2256]
 gi|122984730|sp|Q1GP63|MNMG_SPHAL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|98978408|gb|ABF54559.1| glucose inhibited division protein A [Sphingopyxis alaskensis
           RB2256]
          Length = 619

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/615 (46%), Positives = 401/615 (65%), Gaps = 2/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAAA AA+LGA  AL++   + IG+MSCNPAIGGLGKGHL+RE+DA
Sbjct: 6   TFDVIVVGGGHAGTEAAAAAARLGARVALVSFDPTLIGTMSCNPAIGGLGKGHLMREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG M R ADAA I +R+LN  KG AV+GPR QADR+LYR A+Q  + ++E + V+ GE 
Sbjct: 66  LDGWMARAADAAAIHYRMLNASKGAAVQGPRIQADRKLYRAAIQTLLAAEEGITVVAGEA 125

Query: 125 AGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           A    +    I+ + + D + +    VVL TGTFL G +  G+ ++  GR+G++ S+ L 
Sbjct: 126 AALRLSNGGRIAGLDLADGTALTARAVVLATGTFLGGRLFRGEERMEGGRIGEAGSHRLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                      RLKTGTP RLDG+TI W + ++Q +D      S   +  T  QI C IT
Sbjct: 186 GQLRAAHLPMARLKTGTPPRLDGRTIDWARLQEQPSDGGRWTCSTWNNARTVPQIFCAIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN E+HRII EN+  S +++G I + GPRYCPSIEDKI RF +R+GHQ+FLEPEGL+T 
Sbjct: 246 RTNAESHRIIAENLHRSPLFTGAIGAAGPRYCPSIEDKIHRFADRDGHQVFLEPEGLDTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++Q   +RTI GLE V ++ PGYA+EYD+I+P+ L  TL+ + + G+
Sbjct: 306 LVYPNGISTSLPADVQLAMLRTIEGLEAVEMVVPGYAVEYDHIDPRALDRTLQVRAMPGV 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVAG N+A      + +   R++SYIGVM+DDL  +GV EP
Sbjct: 366 WCAGQINGTTGYEEAAAQGLVAGANAALAVQGREPLILDRSESYIGVMVDDLVLQGVTEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR DNA  RLTP G+ LG +       FA+ + E     +LL++ V 
Sbjct: 426 YRMLTARAEYRLRLRADNAATRLTPKGIALGLVRPATAALFARRMAERARAGALLEAPVA 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T+ +  +  +    DG  R   + L +P  +++ L  + P+       ++  +  ++ YA
Sbjct: 486 TA-DYGAIGLPLPGDGIARRRIDLLRFPGATVERLTILVPEIESIDRAILSEVVEDAHYA 544

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  R   E + +   E  L+    DY+++  LS E+ E+LS  +P  L QA++I+G+TP
Sbjct: 545 PYIARHEAELRALAANEAILLDPALDYAAIGGLSREMVERLSKARPETLGQAARIDGVTP 604

Query: 604 AALNLLLIYIKKNTV 618
           AAL  ++++ ++   
Sbjct: 605 AALTAIMVHSRRRAA 619


>gi|85860875|ref|YP_463077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophus aciditrophicus SB]
 gi|85723966|gb|ABC78909.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Syntrophus aciditrophicus SB]
          Length = 661

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/626 (44%), Positives = 379/626 (60%), Gaps = 16/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+G GHAGCEAA  A+++G  T L      +I  MSCNPAIGGL KG LV+EID
Sbjct: 24  RQFDVIVVGAGHAGCEAALAASRMGCETLLFNINLDSIALMSCNPAIGGLAKGQLVKEID 83

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR+AD   + FR+LN  KGPAV+  R Q D++LYRLAM+  +  Q  L + Q  
Sbjct: 84  ALGGEMGRMADKTAVHFRILNASKGPAVQSSRVQCDKQLYRLAMKSVVERQPKLHLFQSL 143

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   I+ +  Q         VV+TTGTFL G++H+G    PAGR G+  S SL 
Sbjct: 144 VDCLLVKDGQITGVADQTGVCFGAKAVVITTGTFLNGLVHVGTSHYPAGRAGEIASISLA 203

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N   K  F+ GR+KTGTP RL   TI + + E+Q +D    PFS  T+++   ++     
Sbjct: 204 NCLRKMGFEMGRMKTGTPPRLKASTIDFSRLERQDSDPAFEPFSLSTERLGKERLPSYFG 263

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I +NI+ S +YSG IK    RYCPS+EDK++RF ++  H + LE EGL T+
Sbjct: 264 YTTSETHRLIRDNIRFSPLYSGVIKGVSARYCPSLEDKVMRFADKGRHPVVLEFEGLETE 323

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+  +LP ++Q Q + ++PGLE   I+R  YAIEYD++ P +L  TLETK++ GL
Sbjct: 324 EVYAKGLGNSLPLDLQEQIVHSVPGLENSEILRSAYAIEYDFVQPTQLNHTLETKRVRGL 383

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQG+ AGIN+A            R+++Y+GV+IDDL ++GV EP
Sbjct: 384 YLAGQINGTSGYEEAAAQGMWAGINAALAVQGRPPFVLDRSEAYMGVLIDDLVTQGVDEP 443

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YRMFTSRAEYR+ LR DNA  RLTP G  LG I +   ++ ++ I+        L S   
Sbjct: 444 YRMFTSRAEYRLILREDNAALRLTPRGFDLGLIPQDLHEQISERIRRIEEGMKCLSSFKI 503

Query: 482 ----VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARK-----FSS 530
                + SK     S + K      T ++ L   D S ++L  F   PD  +     +  
Sbjct: 504 YPGTAVNSKLEEHGSPAIK---NPVTLFQLLKRTDLSWEDLSMFQDLPDFPEDVPDGYDR 560

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ ++++IE+ Y  Y  RQ      +K  E R IP   DYS++P LSNEL+ KL+ ++P 
Sbjct: 561 MIRKQIEIEAKYEGYIQRQREAVVRMKALESRRIPPGMDYSAIPGLSNELRMKLARVEPE 620

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QA +I GMT AAL  ++I IKK 
Sbjct: 621 TIGQARRITGMTQAALAAVMIMIKKK 646


>gi|325141207|gb|EGC63707.1| glucose-inhibited division protein A [Neisseria meningitidis CU385]
          Length = 628

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNADMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|261400118|ref|ZP_05986243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria lactamica ATCC 23970]
 gi|269210351|gb|EEZ76806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria lactamica ATCC 23970]
          Length = 631

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPIMSVRGSAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGRKIGLVSEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + ++ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|225016767|ref|ZP_03705959.1| hypothetical protein CLOSTMETH_00679 [Clostridium methylpentosum
           DSM 5476]
 gi|224950435|gb|EEG31644.1| hypothetical protein CLOSTMETH_00679 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/622 (44%), Positives = 389/622 (62%), Gaps = 18/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A+LG  TAL T     I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   AYDVIVVGAGHAGVEAALASARLGMRTALFTISLDQISNMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  +Q R+LN  KGPAV   R QADR  Y   M++ + +Q+NLD+ QGEV
Sbjct: 67  LGGEMGKAADATFLQSRMLNRGKGPAVHSLRVQADRMKYHALMKQTVEAQDNLDLRQGEV 126

Query: 125 AGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N ++S+V +  ++     V+L  GT+L G IH+G+     G  G   + +L 
Sbjct: 127 VDVRLDENNNVTSVVTKLGAVFEAKAVILACGTYLNGTIHVGEASYTGGPDGALAATTLT 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  K      R KTGTPAR+  ++I +   E+Q  D+ ++PFSF T      Q++C I 
Sbjct: 187 YNLEKLGVKLRRFKTGTPARVHRRSIDFSVLEEQCGDDPIVPFSFETTGKLENQVKCYIA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETHR+I EN+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD
Sbjct: 247 YTNEETHRVIRENLHRSPLYAGRIEGVGPRYCPSIEDKVVRFPDKLRHQLFVEPMGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q QF+RTI GLE+V I+R  YAIEYD  +P +L PTLE  +I GL
Sbjct: 307 EIYLQGMSSSLPEDVQIQFLRTIRGLERVEIMRTAYAIEYDCCDPLQLLPTLELIQIGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AGIN+A K    +     R  SYIG +IDDL +KG  +P
Sbjct: 367 YGAGQFNGTSGYEEAAAQGLIAGINAALKIQGKEPFVLDRASSYIGTLIDDLVTKGCSDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----------AKYIQEYNF 473
           YRM TSR+EYR+ LR DNAD RLTP+G +LG I E+R ++F           K I++ N 
Sbjct: 427 YRMMTSRSEYRLILRQDNADQRLTPLGYQLGLISEQRYQQFLNKLELIQQEKKRIRKANI 486

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             S   +  L S+  S  +   K         + +  P     +L     +       V 
Sbjct: 487 GPSEQLNEFLVSRGTSPLTTGTK-------LADLIRRPQIRYIDLAPFDGERPPLPFEVA 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  RQ+++ +E++  E++ +    DY+++  L  E +EKL+ +KP ++ 
Sbjct: 540 EQVEIELKYEGYIKRQLMQVEEMRKLEQKPLSAALDYTTIEGLRLEAQEKLNKVKPLSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LLI++++
Sbjct: 600 QASRISGVSPADVSVLLIWLEQ 621


>gi|205831577|sp|Q2LXU8|MNMG_SYNAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 639

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/626 (44%), Positives = 379/626 (60%), Gaps = 16/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+G GHAGCEAA  A+++G  T L      +I  MSCNPAIGGL KG LV+EID
Sbjct: 2   RQFDVIVVGAGHAGCEAALAASRMGCETLLFNINLDSIALMSCNPAIGGLAKGQLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR+AD   + FR+LN  KGPAV+  R Q D++LYRLAM+  +  Q  L + Q  
Sbjct: 62  ALGGEMGRMADKTAVHFRILNASKGPAVQSSRVQCDKQLYRLAMKSVVERQPKLHLFQSL 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   I+ +  Q         VV+TTGTFL G++H+G    PAGR G+  S SL 
Sbjct: 122 VDCLLVKDGQITGVADQTGVCFGAKAVVITTGTFLNGLVHVGTSHYPAGRAGEIASISLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N   K  F+ GR+KTGTP RL   TI + + E+Q +D    PFS  T+++   ++     
Sbjct: 182 NCLRKMGFEMGRMKTGTPPRLKASTIDFSRLERQDSDPAFEPFSLSTERLGKERLPSYFG 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I +NI+ S +YSG IK    RYCPS+EDK++RF ++  H + LE EGL T+
Sbjct: 242 YTTSETHRLIRDNIRFSPLYSGVIKGVSARYCPSLEDKVMRFADKGRHPVVLEFEGLETE 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+  +LP ++Q Q + ++PGLE   I+R  YAIEYD++ P +L  TLETK++ GL
Sbjct: 302 EVYAKGLGNSLPLDLQEQIVHSVPGLENSEILRSAYAIEYDFVQPTQLNHTLETKRVRGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQG+ AGIN+A            R+++Y+GV+IDDL ++GV EP
Sbjct: 362 YLAGQINGTSGYEEAAAQGMWAGINAALAVQGRPPFVLDRSEAYMGVLIDDLVTQGVDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YRMFTSRAEYR+ LR DNA  RLTP G  LG I +   ++ ++ I+        L S   
Sbjct: 422 YRMFTSRAEYRLILREDNAALRLTPRGFDLGLIPQDLHEQISERIRRIEEGMKCLSSFKI 481

Query: 482 ----VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARK-----FSS 530
                + SK     S + K      T ++ L   D S ++L  F   PD  +     +  
Sbjct: 482 YPGTAVNSKLEEHGSPAIK---NPVTLFQLLKRTDLSWEDLSMFQDLPDFPEDVPDGYDR 538

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ ++++IE+ Y  Y  RQ      +K  E R IP   DYS++P LSNEL+ KL+ ++P 
Sbjct: 539 MIRKQIEIEAKYEGYIQRQREAVVRMKALESRRIPPGMDYSAIPGLSNELRMKLARVEPE 598

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            + QA +I GMT AAL  ++I IKK 
Sbjct: 599 TIGQARRITGMTQAALAAVMIMIKKK 624


>gi|291042834|ref|ZP_06568575.1| glucose-inhibited division protein A [Neisseria gonorrhoeae DGI2]
 gi|291013268|gb|EFE05234.1| glucose-inhibited division protein A [Neisseria gonorrhoeae DGI2]
          Length = 655

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/618 (45%), Positives = 388/618 (62%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 632 ISGVTPAAVALLMVHLKR 649


>gi|17534255|ref|NP_496169.1| hypothetical protein F52H3.2 [Caenorhabditis elegans]
 gi|2494737|sp|Q20680|YT32_CAEEL RecName: Full=Uncharacterized protein F52H3.2
 gi|3877390|emb|CAA91322.1| C. elegans protein F52H3.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 638

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/615 (45%), Positives = 391/615 (63%), Gaps = 11/615 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCE+AA AA+ G++T L+T   +TIG MSCNP+ GG+GKGHL+RE+DALD
Sbjct: 18  DVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIGKGHLIREVDALD 77

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL  R+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S + L++++GEVA 
Sbjct: 78  GLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKTQMQNEINSTKRLEILEGEVAE 137

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   I  I M + ++IR   VV+TTGTFLR  I+ G    PAGR+G+  S+ L  SF
Sbjct: 138 LLVENGKIVGIRMMNETVIRTKCVVITTGTFLRAQIYQGMKTWPAGRIGEKSSDRLSESF 197

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGIT 243
           +K  F+ GRL+TGTP RL   +I + K E+   D   IPFSF+T  +      Q+   + 
Sbjct: 198 LKHGFELGRLRTGTPPRLMKDSINFSKFERVAPDRTPIPFSFLTKNVWISYEDQLPTYLG 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E  RI  EN+  +  Y    ++  PRYCPS+E K++RF + + H++FLE EGL++ 
Sbjct: 258 HTNDEVCRIGNENMHEN--YQVASETTSPRYCPSLESKLLRFPKLH-HRLFLEHEGLDSP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YP G+S     E+Q Q +R IPGLE V I +PGY ++YD++NPK+L  TLET+K+ G+
Sbjct: 315 HIYPQGMSLTFKPEVQTQLLRAIPGLENVEIFQPGYGVQYDFVNPKQLKRTLETRKVEGM 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAGIN++ ++     +  SRT+ YIGV+IDDLTS G  EP
Sbjct: 375 FLAGQINGTTGYEEAAAQGVVAGINASARAQNEPGMEVSRTEGYIGVLIDDLTSLGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----RSLLK 479
           YRM TSRAE+R+ LRPDNAD RLT +G +   I + R   F +   E N L      +  
Sbjct: 435 YRMLTSRAEFRLYLRPDNADIRLTELGRRHNAISDNRWAIFTETKGELNNLTQRTEEMKM 494

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           S+V   + +   + + + DGK  +A++ +   D    +L  +C   +     ++ERL+IE
Sbjct: 495 SMVKWKRIIPKLAATSRNDGKVLSAFDLIHRYDLDKSDL-ELCLKDKNIGEDILERLKIE 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y     R   + +EI  E    IP + D+S++  +S E  EKL   +P NL  A++I 
Sbjct: 554 GRYQMEHERMKAKKQEIDRESATAIPDNTDFSTMRGMSLECIEKLERARPRNLAAATRIS 613

Query: 600 GMTPAALNLLLIYIK 614
           G+TP A+ +L+ ++K
Sbjct: 614 GITPEAIVVLMRHLK 628


>gi|332022778|gb|EGI63051.1| Protein MTO1-like protein, mitochondrial [Acromyrmex echinatior]
          Length = 804

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/595 (46%), Positives = 387/595 (65%), Gaps = 14/595 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIV+GGGHAG EA+A A ++GA T L+T K STIG MSCNP+ GG+GKGHL+R
Sbjct: 205 MNKTKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLMR 264

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDG+  R+ D +GI +RVLN  KGPAV G R Q DR+LY+  +Q E+ +   L + 
Sbjct: 265 EVDALDGVCCRICDISGIYYRVLNKSKGPAVWGLRAQIDRKLYKKHLQAELFNMPRLHIY 324

Query: 121 QGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +  V     E + +S   ++++D + +    VV+TTGTFL+G I+IG  K PAGR+ D P
Sbjct: 325 ESSVENLILENDSLSCQGVILRDGTKMFGDAVVITTGTFLKGQINIGLEKRPAGRLNDEP 384

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
           S  L N+  +  F  GRLKTGTP RL+ ++I + K      D+  IPFSFM+D +    +
Sbjct: 385 SIGLANTLDRLGFRIGRLKTGTPPRLEKESIDFTKCTAYPPDDSPIPFSFMSDNVWLPPD 444

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +QI   +T TN +  +I+ +N+  +   + +I   GPRYCPSIE KI+RF     HQI+L
Sbjct: 445 KQILTHLTYTNEDVAKIVKDNMHCNLHVTEEIT--GPRYCPSIESKILRFKALK-HQIWL 501

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL++ ++YP+G+S  LPEE Q + ++ IPGLE   +++PGY +EYDY++P+EL   L
Sbjct: 502 EPEGLDSPLIYPSGLSCTLPEEKQVELVKCIPGLENARLVKPGYGVEYDYVDPRELTTQL 561

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETKK+ GLFLAGQINGTTGYEEAAAQG++AG+N+A K  K   +  SRT+ YIGV+IDDL
Sbjct: 562 ETKKVPGLFLAGQINGTTGYEEAAAQGIIAGVNAAAKVFKKPPLLISRTEGYIGVLIDDL 621

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T++G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+   R ++  +  ++   + 
Sbjct: 622 TTEGTTEPYRMFTSRSEFRVSLRPDNADQRLTEKGYAIGCVSRERIEKTREVFRKMQEVV 681

Query: 476 SLLKSLVL-TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQ--NLFSICPDARKF--SS 530
            +LKS V  TSK      +   +D   ++A++ LS  D S+    L    P        S
Sbjct: 682 QILKSDVRSTSKWRQLLKMKISKDTGYKSAFDMLSVTDESVTFAKLAKQLPQLGHLDGDS 741

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKL 584
            +  R++IE+ Y     +Q  +  +I+  E+ ++P D DY+S    LSNE +EKL
Sbjct: 742 GLARRIEIETKYVFAVAKQQGQVNDIRRNEQMIVPDDIDYNSPDLNLSNEDREKL 796


>gi|240015042|ref|ZP_04721955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae DGI18]
 gi|240122110|ref|ZP_04735072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID24-1]
          Length = 642

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 387/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP++GG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSVGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 555

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 556 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQ 615

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 616 ASRISGVTPAAVALLMVHLKR 636


>gi|119355878|ref|YP_910522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium phaeobacteroides DSM 266]
 gi|166222923|sp|A1BCG1|MNMG_CHLPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119353227|gb|ABL64098.1| glucose inhibited division protein A [Chlorobium phaeobacteroides
           DSM 266]
          Length = 621

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/620 (43%), Positives = 374/620 (60%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEA   AA+ G S  LIT   S I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAVLAAARTGMSCLLITSDLSAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D  GIQFR+LN  KG A+  PR QADR LY + M++ I  Q+N+D++Q  V 
Sbjct: 62  GGEMAKAIDETGIQFRMLNKSKGAAMHSPRAQADRALYSVYMRKIIEEQDNIDLVQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G + E   +   ++    +I+  +V+L  GTFL G+IHIG    P GR + + P + L  
Sbjct: 122 GLDVESGAVRGAILPSGRIIKGKSVILCCGTFLNGLIHIGMNHFPGGRTIAEPPVSGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +     F  GRLKTGTP R+D +++ +   E+Q  D    PFSF TD + +R Q+ C +T
Sbjct: 182 NLQSLGFRAGRLKTGTPPRIDSRSVNYSLVEEQSGDPDPRPFSFHTDSLGHRAQVSCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T   TH ++      S ++SG ++  GPRYCPS+EDKI RF ++N H IFLEPEG  T+
Sbjct: 242 KTKETTHELLRTGFSRSPLFSGKVQGVGPRYCPSVEDKIFRFPDKNSHHIFLEPEGAETN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE V +IRPGYAIEYD+  P ++  TLETK I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLLALRSIPGLEHVKMIRPGYAIEYDFFFPYQIKNTLETKIIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++ K          R+ +YIGV+IDDL +K ++EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASLKIQNRKPFVLDRSQAYIGVLIDDLVTKDIIEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+RISLR DNAD RL  +G + G +      +    I     LR L  ++ L
Sbjct: 422 YRMFTSSAEHRISLRHDNADIRLCRMGHEAGTVDFSSFTKTEYKISAIRQLRQLCDTMKL 481

Query: 484 TSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
               + S      Q    +       L  P+   +NL  +  D R           V E+
Sbjct: 482 HPDQIISAMAGAAQQPPLQPIAISNLLKRPEIDFENLLVLSEDFRAGVNEITTDPDVFEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R ++  ++I   E   IP  F Y+++  LSNE +EKL++ KP  + QA
Sbjct: 542 VVIDLKYEGYLKRDLLMTEKIARLESHSIPGSFSYATVSGLSNEGREKLTLHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++LLI I +
Sbjct: 602 SRIPGVSPSDISVLLIKIGR 621


>gi|15835399|ref|NP_297158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Nigg]
 gi|270285578|ref|ZP_06194972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Nigg]
 gi|270289588|ref|ZP_06195890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Weiss]
 gi|301336974|ref|ZP_07225176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum MopnTet14]
 gi|13626938|sp|Q9PJP3|MNMG_CHLMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|7190812|gb|AAF39588.1| glucose inhibited division protein A [Chlamydia muridarum Nigg]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/615 (44%), Positives = 380/615 (61%), Gaps = 16/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M++ +     L ++QG   
Sbjct: 68  GGVMAEVTDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKQLLEQVPGLHIMQGTAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L   
Sbjct: 128 ALLDDGEKVLGVSTKEGWAYSGETVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSKD 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGIT 243
             +  F  GRLKTGTPARL   +I +   E+Q  D+  + F    +    +  Q+ C IT
Sbjct: 188 LKRLGFPLGRLKTGTPARLLSSSIDFSIMEEQPGDQN-VCFVHREEAFVPKLPQVSCHIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  +I  N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT 
Sbjct: 247 YTTDKTKDLIANNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNTR 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST++P ++Q++ IR++ GLE   I RP YAIEYDYI    + P+LE+K + GL
Sbjct: 307 EVYVNGLSTSMPFDVQYEIIRSVAGLENAVITRPAYAIEYDYIQGNVILPSLESKILEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AG+N+  K         SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGVNAVNKVLHRPAFIPSRQESYIGVMLDDLTTQVLDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNA  RL+  G  LG +     +R+A + ++ N +    + L  
Sbjct: 427 YRMFTSRAEHRLLLRQDNAGMRLSHYGHALGLLS---SERYAMFQKQKNCIEHEKERLAK 483

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSY 542
           T +    + +   +          L  P+ S Q L +  P D + +  ++   L++E  Y
Sbjct: 484 TFRKYGDSIVPLTK---------ILCRPEVSYQQLLTEFPEDVKDWGPIIGASLEMEIKY 534

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ    + ++  E  LIP+  DY S+ ALS E +EKLS   P  +  A++I G++
Sbjct: 535 SGYISRQQTLIRSMEKAENTLIPEGIDYHSISALSLEAREKLSKFTPRTIGSAARISGIS 594

Query: 603 PAALNLLLIYIKKNT 617
            A + +L++ +KK+ 
Sbjct: 595 VADIQVLMVSLKKDA 609


>gi|154272573|ref|XP_001537139.1| hypothetical protein HCAG_08248 [Ajellomyces capsulatus NAm1]
 gi|150409126|gb|EDN04582.1| hypothetical protein HCAG_08248 [Ajellomyces capsulatus NAm1]
          Length = 673

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/637 (44%), Positives = 394/637 (61%), Gaps = 25/637 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDA
Sbjct: 11  AYDVVVIGGGHAGSEACAAAARLGARTALVTPSLSNIGVCSCNPSIGGIGKGTMIREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+ G+VAD +GIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+V
Sbjct: 71  LDGVAGKVADKSGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGKV 130

Query: 125 AGFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                 K+ + +        + ++   +I    V++TTGTFL G IHIG    P+GR+G+
Sbjct: 131 GDIIVSKDNLPAGSQGKIIGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLGE 190

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
           + +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   IPFS++ +++   
Sbjct: 191 AATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPIPFSYLNNRVDVD 250

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H I
Sbjct: 251 DEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHMI 308

Query: 294 FLEPEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +LEPEG   D V+YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L 
Sbjct: 309 WLEPEGFEPDEVIYPNGISMTIPADAQLAMLRTVAGLENVRMLQAGYGVEYDYVDPRSLR 368

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+
Sbjct: 369 PTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIMV 428

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++   +  
Sbjct: 429 DDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQIT 488

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICP-------- 523
            L++LL++    S   S        D   R+A++ L   D SI ++   I P        
Sbjct: 489 ELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSGK 548

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
              A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E +
Sbjct: 549 AYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSTEER 608

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             L  ++P ++  A +IEGMTP A   LL+++++ T 
Sbjct: 609 AALEKVRPESIGMARRIEGMTPVAALKLLVHVRRTTA 645


>gi|121703666|ref|XP_001270097.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus clavatus NRRL 1]
 gi|119398241|gb|EAW08671.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus clavatus NRRL 1]
          Length = 692

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/637 (44%), Positives = 394/637 (61%), Gaps = 27/637 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 36  RAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+ GR+ D AGI FRVLN  KGPAV GPR Q DR+LY+  MQ E+++ E L +++G+
Sbjct: 96  AMDGVAGRIIDRAGIMFRVLNRSKGPAVWGPRAQIDRDLYKTYMQEELVATEGLSIVEGK 155

Query: 124 VAGFNTEK----NI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     K    N+      I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 156 VADIVVSKEGVENVPGAQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSGR 215

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   +
Sbjct: 216 MGEAATFGLSKSLHEAGFQLGRLKTGTPPRLDMKTIDFSSLEVQKGDSPPQPFSYLNSTV 275

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C +T TN  +H II  N++ S      ++  GPRYCPS+E KI+RF ++  
Sbjct: 276 EVGDEGQLTCWMTHTNEASHEIIRANLEKSIHIRETVR--GPRYCPSLESKIIRFHDKKQ 333

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           HQI+LEPEG    +V+YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P+
Sbjct: 334 HQIWLEPEGFAPNEVIYPNGISMTVPADAQYAMLRTVRGLENVRMLQPGYGVEYDYIDPR 393

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +IG
Sbjct: 394 NLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFIG 453

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G +  +R +RF     
Sbjct: 454 IMIDDLVTKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARNAGIVTNKRWQRFTDTEA 513

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF---------S 520
           +   L+ LL+   L+S   S      + D   R+A + L      I  L          +
Sbjct: 514 QIQELQGLLERTRLSSSVWSRKGFKTRTDSSVRSALDLLCLDAVDIDTLIPHIESPSGTA 573

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P +  F   +  R+ IE  YA Y  RQ   A++   +E  L+P D DY+ +  +S E 
Sbjct: 574 YTPSS--FDPAIRARVAIEGRYAPYVKRQEAMARKFLQDESLLLPADLDYAEVQGISTEE 631

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           ++ L  ++P ++  A +IEG+TPA    LL++++++T
Sbjct: 632 RQALERVRPVSVGMARRIEGVTPAGALRLLMHVRRST 668


>gi|239997980|ref|ZP_04717904.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae 35/02]
 gi|240124724|ref|ZP_04737610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae SK-92-679]
          Length = 642

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 388/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +     + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 496 TTWYAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 554

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 555 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 614

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 615 QASRISGVTPAAVALLMVHLKR 636


>gi|153854262|ref|ZP_01995561.1| hypothetical protein DORLON_01555 [Dorea longicatena DSM 13814]
 gi|149753037|gb|EDM62968.1| hypothetical protein DORLON_01555 [Dorea longicatena DSM 13814]
          Length = 636

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/623 (43%), Positives = 389/623 (62%), Gaps = 15/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 15  YDVVVIGAGHAGCEAALATARLGFQTLVFTVSVDSIAMMPCNPNIGGSSKGHLVRELDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+ +Y   M+R + +QENL++ QGEVA
Sbjct: 75  GGEMGKVIDRTFIQSKMLNKSKGPAVHSLRAQADKAVYSRTMRRVLEAQENLEIKQGEVA 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +     +   C  V++ +GT+L+     G +    G  G   +N L + 
Sbjct: 135 NLLVEDGKITGVQTFSGATYHCKAVIICSGTYLKARCIYGDVSQYTGPNGLQAANHLTDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +      R KTGTPAR+D KT+ + K E+QF DER++PFSF T  D +   Q  C +T
Sbjct: 195 LKELGIKMYRFKTGTPARVDRKTVDFSKMEEQFGDERVVPFSFTTNPDDVQIDQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++  HQ+FLEPEGL TD
Sbjct: 255 YTNETTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKKRHQVFLEPEGLETD 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++PGLE V I+R  YAIEYD I+ ++L P+LE + ISGL
Sbjct: 315 EMYIGGMSSSLPEDVQYAMYRSVPGLEHVKIVRNAYAIEYDCIDARQLKPSLEFRNISGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NG++GYEEAAAQGL+AGIN+ARK    + +   R+++YIGV+IDDL +K   EP
Sbjct: 375 FSAGQFNGSSGYEEAAAQGLIAGINAARKLQGKESLVLDRSEAYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YRM TSRAEYR+ LR DNAD RLT  G ++G I    Q+R+ +  ++   + S ++ L  
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTEKGYEVGLIS---QERYDRLKEKERLIESEIERLKN 491

Query: 482 --VLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSIC---PDARK-FSSLVI 533
             V TS+ +     S++        +  E +  P+ S + + +I    P+  K  ++ VI
Sbjct: 492 AYVGTSEKVQELLESYESTPLNSGSSLAELIRRPELSYEAVTAIDVTRPELPKDLAAEVI 551

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ  + ++ K  E + IP+D DY ++ +L  E  +KL   +P ++ 
Sbjct: 552 EQVDISLKYDGYIQRQKRQVEQFKKMENKKIPEDMDYDAVNSLRIEAVQKLKEYRPVSIG 611

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G++PA +++LL+Y+  N
Sbjct: 612 QASRISGVSPADISVLLVYLSGN 634


>gi|150866215|ref|XP_001385733.2| Mitochondrial Translation Optimization [Scheffersomyces stipitis
           CBS 6054]
 gi|149387471|gb|ABN67704.2| Mitochondrial Translation Optimization [Scheffersomyces stipitis
           CBS 6054]
          Length = 689

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/645 (42%), Positives = 389/645 (60%), Gaps = 32/645 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIGGGHAGCEAA  +A+ G  T LIT     IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  FPVVVIGGGHAGCEAATGSARSGTPTTLITPNVDKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI F++LN  KG AV GPR Q DR++Y   MQ+EIL+  NL V++  V 
Sbjct: 98  DGVAARITDKAGIHFKILNASKGAAVHGPRAQIDRKIYLEEMQKEILNYPNLSVLEASVE 157

Query: 126 GF-------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                            E   +  +V+ D S++ CS VV+TTGTFL G IHIG    P+G
Sbjct: 158 DIIIEPTRDQSTDAEGREFGSVKGLVLGDGSIVGCSKVVVTTGTFLGGEIHIGLTAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+  +  L  +F    F  GRLKTGTPARL  KTI +     Q +D    P S+M DK
Sbjct: 218 RIGEDATFGLSETFRTAGFKLGRLKTGTPARLSSKTIDYSNLNVQPSDYPPQPISYMNDK 277

Query: 233 ITNRQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +  ++  + C  T T  E H++I EN+  S      +K  GPRYCPSIE KI++F ++  
Sbjct: 278 VQLQEQLVNCYQTSTTPEFHKLISENLDKSIHIKETVK--GPRYCPSIESKIIKFPQKQS 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD+VYPNGIS  +P +IQ Q +R +PG   V +I+PGY +EYDY++P+E
Sbjct: 336 HMVWLEPEGLDTDLVYPNGISCTMPADIQEQLVRMMPGCNNVKMIQPGYGVEYDYVDPRE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLE+K + GL+LAGQINGTTGYEEAA+QG +AGIN+       + +  +R D Y+GV
Sbjct: 396 LKMTLESKLVDGLYLAGQINGTTGYEEAASQGCLAGINAGLAYKGAEPLELTRADGYLGV 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KG+ EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R   + K + +
Sbjct: 456 LVDDLITKGIEEPYRMFTSRSEFRISIRSDNADRRLTEKGYNAGVVSEERYHHYMKEMVQ 515

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFS------- 520
           ++ ++  L SL L+    +        D    T    ++ LSY   SI +L         
Sbjct: 516 FHSIKDHLTSLSLSGAIWAPALKGLSSDVNRNTLVDGWKLLSYKGMSIADLLPHMSKFTR 575

Query: 521 ---ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL- 576
              + P     S+ ++ R+ +ES Y  +  ++         +E  L+P +++Y+    L 
Sbjct: 576 DGIVPPYYENLSARLMNRIDVESDYTPWMPKEKAHLTAYAADENLLLPVNYNYNYEGKLK 635

Query: 577 -SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            S+E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L
Sbjct: 636 ISHEVCVLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQAQL 680


>gi|323705842|ref|ZP_08117414.1| glucose inhibited division protein A [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534838|gb|EGB24617.1| glucose inhibited division protein A [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 623

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 387/618 (62%), Gaps = 14/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV VIG GHAGCEAA   A+LG  T        +I  M CNP+IGG  K +LVREIDAL
Sbjct: 8   YDVAVIGLGHAGCEAALATARLGLKTVAFAINLDSIALMPCNPSIGGPAKTNLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D   IQ R LN  KGPAVR  R Q+D++ Y+  M+  +  QENLD+ Q EV 
Sbjct: 68  GGQMAINTDLTLIQQRTLNTSKGPAVRALRAQSDKKRYQFNMKYTLEKQENLDIKQAEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   + S++ +  +   C + ++TTGT+LRG I IG +    G  G  P+N L  S
Sbjct: 128 DIEVEDGQVKSVITKTGARYLCRSCIVTTGTYLRGRIIIGDVSYSGGPNGLFPANELSKS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
           F + +    R KTGTPAR+D K+I +D  E Q  D+++ PFS+M D+I   QI C +T T
Sbjct: 188 FERLNIRLMRFKTGTPARVDKKSINFDAMEIQPGDDKVTPFSYMHDEINVEQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH +IM+NI  S +YSG+IK  GPRYCPSIEDK+V+F ++  HQ+F+EPEG +T+ +
Sbjct: 248 NTKTHEVIMKNIDRSPLYSGEIKGVGPRYCPSIEDKVVKFPDKLRHQLFIEPEGRDTNEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S+++PE++Q +F+RTI GLE V ++RPGYAIEYD I+P +L  +LE K ISGLF 
Sbjct: 308 YVQGMSSSMPEDVQIEFLRTIKGLENVKVMRPGYAIEYDCIDPTQLKQSLELKTISGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKHYGREPFILDRSEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT  G ++G + + R  RF     +Y   +  L  ++++ 
Sbjct: 428 MLTSRAEYRLILRQDNADFRLTEKGRQIGLVDDERYNRFLMKKDQYEKEMERLKNTMIVP 487

Query: 485 SKNLSSTSISFKQDGKT-----RTAYEFLSYPDF---SIQNLFSICPDARKFSSLVIERL 536
           S +++      K  G +      T Y+ L  P+    S + + S  PD       V  ++
Sbjct: 488 SHDVNEY---LKSKGSSPIVTGMTMYDLLKRPEIDYVSSKVIDSDRPD--DIRDDVAFQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  +QM + ++ K  E + IP   +Y  +  +S E ++KL  + P ++ QAS
Sbjct: 543 DINIKYEGYIRKQMEQVEKFKALENKKIPSWINYDDIKGISIEARQKLKSIMPTSVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++PA ++++LIY++
Sbjct: 603 RISGVSPADISVILIYLQ 620


>gi|240113912|ref|ZP_04728402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae MS11]
          Length = 642

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 387/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 554

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 555 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 614

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 615 QASRISGVTPAAVALLMVHLKR 636


>gi|150392472|ref|YP_001322521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkaliphilus metalliredigens QYMF]
 gi|166989733|sp|A6TXE4|MNMG_ALKMQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149952334|gb|ABR50862.1| glucose inhibited division protein A [Alkaliphilus metalliredigens
           QYMF]
          Length = 630

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/626 (44%), Positives = 392/626 (62%), Gaps = 15/626 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAGCEAA  AA++GA T ++T    +I  M CNP+IGG GKGHLVREIDA
Sbjct: 7   TFDVIVVGAGHAGCEAALAAARMGAKTLMLTMTLDSIAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ I ++ NL + Q EV
Sbjct: 67  IGGEMGINTDKTFIQSRMLNTGKGPAVHSLRAQADKNKYHTEMKKTIENEPNLLLKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  +V +  +     +V+L TG +LRG I+IG++   +G  G  PS  L  
Sbjct: 127 VDLIIEDNTVKGVVTRSGASFYSHSVILATGVYLRGKIYIGEVNYESGPNGLFPSMHLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K   +  R KTGTPAR+   ++ + K E+   DE ++PFSFM D I  +Q+ C +TR
Sbjct: 187 KLTKLGCNMRRFKTGTPARIHQDSVDFSKMEEHLGDEEIVPFSFMNDGIEKKQVPCWLTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR+IMEN+  SA+Y GD++S GPRYCPSIEDK+VRF ++  HQIF+EPEGL+T  
Sbjct: 247 TTGETHRVIMENLNRSAMYRGDMESVGPRYCPSIEDKVVRFSDKPSHQIFIEPEGLDTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPEE+Q   ++T+ GLE   I+RP YAIEYD I+P +L PTLE K I  LF
Sbjct: 307 MYVQGMSTSLPEEVQDAMLKTVIGLESAVIMRPAYAIEYDCIDPTQLKPTLEVKHIENLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQ NGT+GYEEAAAQGL+AGIN+  K+   +     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 SGGQFNGTSGYEEAAAQGLMAGINAVLKTKGEEPFVLDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQEYNFLRSLLKSL 481
           RM TSRAEYR+ LR DNAD RLT    K+G   + R +R+     +I+E   +  L K+ 
Sbjct: 427 RMMTSRAEYRLILRQDNADMRLTEKSYKIGLASKERLERYLLKKSHIEEE--ITRLKKTN 484

Query: 482 VLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IER 535
           V   K    L     S  + G   + Y+ L  P+ + + L  I  D  +   +V    E+
Sbjct: 485 VSPEKANPILEENKSSLIKAG--MSLYDLLKRPEVTYKVLKKI--DENRNVDIVRDAQEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  +Q+ +  + K  E +++P++ DY  +  L  E ++KLS ++P ++ QA
Sbjct: 541 CEIIIKYEGYIEKQLRQIDQFKKLENKILPQEIDYHGIDGLRLEARQKLSDIQPMSVGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLN 621
           S+I G++P+ +++L+IY+++   + N
Sbjct: 601 SRISGVSPSDISVLMIYLEQRRRQKN 626


>gi|77416429|sp|Q7ULV7|MNMG_RHOBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 653

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/623 (45%), Positives = 383/623 (61%), Gaps = 21/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAG EAAA AA+LGA TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL
Sbjct: 12  YDVVVIGAGHAGTEAAAAAARLGAKTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   DA GIQFR+LN +KGPA+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V 
Sbjct: 72  GGLMGEAIDATGIQFRMLNRRKGPAMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVE 131

Query: 126 GFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
              TE             +  + ++ +++    TV+LTTGTFL+ ++H GK +   GR G
Sbjct: 132 DLITEPIADGQDRLANQRVIGVRVRGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAG 191

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +     F   R KTGTP RL+ +TI +   E+Q  D+   PFS++ D I++
Sbjct: 192 EGTTAGLSGALKGMGFTLDRFKTGTPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISS 251

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C I  TN   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FL
Sbjct: 252 PQMACHIAHTNERVHDLIRANLDRAPMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFL 311

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG  T  VY NGIST+LP ++Q    R IPGLEK  I+R GYA+EYDY  P +L+P L
Sbjct: 312 EPEGRQTCEVYVNGISTSLPRDVQDAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHL 371

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E+K +SGLF AGQINGTTGYEEAA QGL+AG+N+AR +        SR D+YIGV++DDL
Sbjct: 372 ESKSVSGLFFAGQINGTTGYEEAAGQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDL 431

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            + G  EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R++RF + + E     
Sbjct: 432 VTSGTDEPYRMFTSRAEYRLLLRQDNADRRLTAQADELGLIDAARRERFHRKLAEIERGT 491

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL+      +            G T     +L  P+ +   +    P+         E+
Sbjct: 492 ELLQQAKFQPET-----------GPTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             I+  YA Y  RQ  E  +     ++ IP  FDY  +  L NE KEKL+ ++P NL QA
Sbjct: 541 CSIDIKYAGYIDRQQAEVHKQSRHAEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+TPA L L+L +++ N++
Sbjct: 601 KRISGITPADLALVLAHLENNSL 623


>gi|89898690|ref|YP_515800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila felis Fe/C-56]
 gi|123482778|sp|Q252Y3|MNMG_CHLFF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89332062|dbj|BAE81655.1| glucose inhibited division protein NAD/FAD-dependent oxidoreductase
           [Chlamydophila felis Fe/C-56]
          Length = 611

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/621 (45%), Positives = 385/621 (61%), Gaps = 22/621 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAAFCSAKMGASVLILTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEITDRSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESTPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++N+I  +  ++       TV+L++GTF+RG+IHIG      GR+GD  +  L  
Sbjct: 127 ESLLDKENVIQGVTTKEGIAYLGKTVILSSGTFMRGLIHIGDRSFSGGRLGDPAATGLSA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F    +       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGDPG-VGFVHRDEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI+ SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG+ T
Sbjct: 246 THTTEKTKEIITANIRRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q++ IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYEMIRSVRGLENAIITRPAYAIEYDYVHGNVIYPTLESKTIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLRKPDFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKS 480
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F   K I E   LR     
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLSKERYELFEHQKQIIEEEKLR----- 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERLQI 538
                  LS T   FK+ G +  +  + L  P+ S   L  + P + R F S++   L++
Sbjct: 481 -------LSKT---FKKYGNSVVSLAKALCRPEVSYDTLREVFPEEVRDFGSILNASLEM 530

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ      +   E   IP+D DY S+ +LS E +EKL+   P  +  AS+I
Sbjct: 531 EIKYAGYIERQKSLIHSLSKSENMTIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRI 590

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+  A + +L++ +KK+  K
Sbjct: 591 SGIANADIQVLMVAVKKHAHK 611


>gi|313683438|ref|YP_004061176.1| glucose inhibited division protein a [Sulfuricurvum kujiense DSM
           16994]
 gi|313156298|gb|ADR34976.1| glucose inhibited division protein A [Sulfuricurvum kujiense DSM
           16994]
          Length = 624

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/617 (44%), Positives = 383/617 (62%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A++G +T LI+     +G+ SCNPA+GGL KGHLVRE+DA
Sbjct: 2   TYDVIVVGGGHAGIEAALASARMGQNTLLISILAEQVGATSCNPAVGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D AGIQFR+LN+ KGPAVRG R Q D + YR+  + +IL+  N+ +IQ  V
Sbjct: 62  LGGEMGLLTDEAGIQFRILNITKGPAVRGSRAQIDMDRYRVIARNKILTTPNMSLIQETV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ ++  +     +  R   V+LTTGTFL GV+HIG++   AGR G+ P+  L +
Sbjct: 122 NALIIEEGVVVGVRTHLLNEYRAKKVILTTGTFLNGVVHIGEITQEAGRFGEFPAKGLTD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI----TNRQIEC 240
           S  +   + GRLKTGT  R+D  +I +   E Q  DE   PFSF TD+     T +Q+ C
Sbjct: 182 SLREAGLNVGRLKTGTCPRVDSSSIDFSVMEIQDGDELPNPFSFRTDRAEFARTKKQLPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN ETH +I  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+  
Sbjct: 242 YIAYTNEETHSLIEGNFHRAPLFTGQIEGVGPRYCPSIEDKINRFRDKERHHLFIEPQTA 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q   I ++ G+E   I+R GYAIEYDY++P EL  TLETKK+
Sbjct: 302 ENTECYINGMSTSLPPDVQRAMIHSVHGMENAKIVRYGYAIEYDYVDPTELKHTLETKKV 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ+NGTTGYEEAAAQG++AGIN+A      + +   R ++YIGV+IDDL +KG 
Sbjct: 362 KNLYCAGQLNGTTGYEEAAAQGMMAGINAALSLQGKEPLILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLK 479
            EPYRMFTSRAEYR+ LR + AD RL   G  LG I + + +R   K  Q    L+ L +
Sbjct: 422 KEPYRMFTSRAEYRLLLREETADLRLGKYGHALGLIDDAQMERIETKRSQITEGLKLLEE 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           ++   +K   +   S  ++  T   T  + +S   F +  L  + P   +    + E++ 
Sbjct: 482 TVYTPNKEFLAFLASIDEEHITDKLTGIQLVSRKSFELDKLVKLIPSFAELDPYIQEQIL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  +Q  + + +       IP+ FD+ S+  LSNE+ +KL    P  L  AS+
Sbjct: 542 IEAKYARYVEKQSDDIERMNKMLHIAIPEGFDFRSVSGLSNEIVDKLYKFNPPTLQAASQ 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAAL++L IYIK
Sbjct: 602 ISGITPAALDILHIYIK 618


>gi|268593830|ref|ZP_06127997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae 35/02]
 gi|268683301|ref|ZP_06150163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-92-679]
 gi|268547219|gb|EEZ42637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae 35/02]
 gi|268623585|gb|EEZ55985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-92-679]
          Length = 631

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 388/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +     + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 485 TTWYAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|254494666|ref|ZP_05107837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae 1291]
 gi|226513706|gb|EEH63051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae 1291]
          Length = 631

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|240081631|ref|ZP_04726174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA19]
 gi|268597727|ref|ZP_06131894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae FA19]
 gi|268599974|ref|ZP_06134141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae MS11]
 gi|268551515|gb|EEZ46534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae FA19]
 gi|268584105|gb|EEZ48781.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae MS11]
          Length = 631

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/622 (45%), Positives = 387/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +   T + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|261391729|emb|CAX49178.1| glucose-inhibited division protein A [Neisseria meningitidis 8013]
          Length = 628

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 387/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 185 GRLHELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNADMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|325105730|ref|YP_004275384.1| glucose inhibited division protein A [Pedobacter saltans DSM 12145]
 gi|324974578|gb|ADY53562.1| glucose inhibited division protein A [Pedobacter saltans DSM 12145]
          Length = 620

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/630 (44%), Positives = 393/630 (62%), Gaps = 25/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+GGGHAGCEAA  AA LG+ T LIT    TI  MSCNPA+GG+ KG ++R
Sbjct: 1   MFNK-YDVIVVGGGHAGCEAATAAANLGSKTLLITMNMGTIAQMSCNPAMGGVAKGQILR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDA+ G  G +AD + IQFR+LN  KGPA+  PRTQ DR    E +RL +++      N
Sbjct: 60  EIDAMGGKSGIIADVSTIQFRMLNRSKGPAMWSPRTQNDRMRFAEEWRLTLEQ----TPN 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD+ Q  V     + N +  +       I   +VVLT GTFL G+IHIG+ ++  GR G+
Sbjct: 116 LDIWQDMVNRLIIKDNKVCGVQTSLGVKIESESVVLTNGTFLNGIIHIGEKQMGGGRTGE 175

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  +    ++  F+ GR+KTGTP R+DG+++ +   E+Q+ D     FS+   K T +
Sbjct: 176 KSATGITEHLVELGFEAGRMKTGTPPRVDGRSLNYSVMEEQWGDTDGGKFSYTDTKTTLQ 235

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+E
Sbjct: 236 QRCCWITYTNDKVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVE 295

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG  T  +Y NG ST+LPE++Q + IR IPG E   + RPGYAIEYDY  P++L  TLE
Sbjct: 296 PEGEKTVEIYVNGFSTSLPEDVQFKAIRLIPGFENAKLYRPGYAIEYDYFPPQQLDLTLE 355

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           T  I  LF AGQINGTTGYEEAAAQG VAG+N+ +K N    +   R++SYIGV+IDDL 
Sbjct: 356 TLLIKNLFFAGQINGTTGYEEAAAQGFVAGVNAHQKVNDKHELILKRSESYIGVLIDDLV 415

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYRMFTSRAE+R+ LR DNAD RL+PIG  LG + E R ++    I   N +  
Sbjct: 416 TKGTEEPYRMFTSRAEHRLLLRQDNADERLSPIGYDLGLVSEERLQKVKDKISNANAIIE 475

Query: 477 LLKSLVLTS-------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDA-- 525
             K + L++       + L++++I+          Y  L+ P   +++L   S   D   
Sbjct: 476 KAKEIKLSTTEANPFLEKLNTSTITHGTK-----LYNLLTRPQIEVKDLRVMSSTFDTYL 530

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            +F +  IE+ +I+  Y +Y  +++   +++K  E + I  +FDY++L +LS E +EKL 
Sbjct: 531 TQFDNETIEQAEIKIKYESYFDKELEIVEKMKKMEDKEINPNFDYNTLTSLSKESREKLI 590

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            +KP  L QAS+I G+ P+ + +L++++ K
Sbjct: 591 KIKPRTLGQASRISGVKPSDITILMVHMSK 620


>gi|319411321|emb|CBY91732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           Glucose-inhibited division protein A [Neisseria
           meningitidis WUE 2594]
          Length = 642

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/618 (46%), Positives = 386/618 (62%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 YEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 619 ISGVTPAAVALLMVHLKR 636


>gi|169333909|ref|ZP_02861102.1| hypothetical protein ANASTE_00295 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259474|gb|EDS73440.1| hypothetical protein ANASTE_00295 [Anaerofustis stercorihominis DSM
           17244]
          Length = 625

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/616 (44%), Positives = 390/616 (63%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  +A+ G+ST L+T     +  M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAALASARKGSSTLLLTLNLDALAMMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ + LN  KG AV+  R QAD++ Y+  M+  I + +NLD+ Q E  
Sbjct: 68  GGEMGKNIDKTFIQTKTLNTAKGVAVQSLRAQADKKKYQEEMKFVIENTDNLDLKQQEAV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +S ++    +M +   +V+ +GT+L+G I IG +    G  G  P+N L +S
Sbjct: 128 EILTEDGKVSGVITHTGAMYKTKAIVICSGTYLKGRIIIGDVSYSGGPNGIFPANKLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             K  F   RLKTGTPAR++ ++I + K E QF D+ + PFSF  +   +   +  C + 
Sbjct: 188 LKKLGFKLLRLKTGTPARVNKRSIDFSKMEIQFGDKEITPFSFENEDKDLEYDEQPCYLA 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I +N+  S +YSG+I   GPRYCPSIEDKIVRF ++  HQ+F+EPEGLNT+
Sbjct: 248 YTNEKTHEVINDNLHRSPLYSGNITGIGPRYCPSIEDKIVRFADKERHQLFVEPEGLNTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q +F+RTI GLE V I+R  YAIEYD + P ++  +LE+K + GL
Sbjct: 308 EMYLQGMSSSLPEDVQVKFLRTIKGLENVEIMRVAYAIEYDAVEPTQIELSLESKIVKGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+A      + +   R+ SYIGV+IDD+T+KG  EP
Sbjct: 368 FTAGQINGTSGYEEAAAQGLIAGINAANYVQNREPLILDRSSSYIGVLIDDITTKGTKEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSR EYR+ LR DNAD RLTP G + G I + R +R   Y +  N  ++ LK + +
Sbjct: 428 YRMFTSRVEYRLLLRQDNADLRLTPYGFEQGLISKERYERLLGYEETVNKEKARLKEIKI 487

Query: 484 T---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T     N+   SI       T T Y+ +  P  S  +      +  + S  V ++++I+ 
Sbjct: 488 TPSNENNIKLESIGTTPLKNTITVYDLIKRPKISYDDTKIFDENRPELSRRVKQQVEIQI 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q     + K  EK+++P+D +Y+ +  L  E ++KL  ++P NL QAS+I G
Sbjct: 548 KYHDYIIKQQASIDKFKSMEKKVLPEDINYNEIKNLRLEARQKLEDIRPKNLGQASRISG 607

Query: 601 MTPAALNLLLIYIKKN 616
           ++P+ +N+LLI + KN
Sbjct: 608 VSPSDINVLLIELAKN 623


>gi|268602312|ref|ZP_06136479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID18]
 gi|268586443|gb|EEZ51119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID18]
          Length = 631

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 387/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++   Q+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPHQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 485 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|59802107|ref|YP_208819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA 1090]
 gi|81170561|sp|Q5F5Y0|MNMG_NEIG1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|59719002|gb|AAW90407.1| putative glucose inhibited division protein A [Neisseria
           gonorrhoeae FA 1090]
          Length = 628

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|254670417|emb|CBA05990.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha153]
          Length = 642

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++   Q+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSAEMHPHQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 436 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + ++ V+E
Sbjct: 496 TTWYTPQKLAEDEQIRVFGQKLNREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVVE 555

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 556 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 615

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 616 ASRISGVTPAAVALLMVHLKR 636


>gi|327540978|gb|EGF27534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Rhodopirellula baltica WH47]
          Length = 667

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/623 (45%), Positives = 384/623 (61%), Gaps = 21/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAG EAAA AA+LGA TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL
Sbjct: 26  YDVVVIGAGHAGTEAAAAAARLGAKTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDAL 85

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   DA GIQFR+LN +KGPA+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V 
Sbjct: 86  GGLMGEAIDATGIQFRMLNRRKGPAMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVE 145

Query: 126 GFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
              TE             +  + ++ +++    TV+LTTGTFL+ ++H GK +   GR G
Sbjct: 146 DLITEPIADGQDRLANQRVIGVRVRGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAG 205

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  +  F   R KTGTP RL+ +TI +   E+Q  D+   PFS++ D I++
Sbjct: 206 EGTTAGLSGALKRMGFTLDRFKTGTPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISS 265

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C I  TN   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FL
Sbjct: 266 PQMACHIAHTNERVHDLIRANLGRAPMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFL 325

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG  T  VY NGIST+LP ++Q    R IPGLEK  I+R GYA+EYDY  P +L+P L
Sbjct: 326 EPEGRQTCEVYVNGISTSLPRDVQDAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHL 385

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E+K +SGLF AGQINGTTGYEEAA QGL+AG+N+AR +        SR D+YIGV++DDL
Sbjct: 386 ESKSVSGLFFAGQINGTTGYEEAAGQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDL 445

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            + G  EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R++RF + + E     
Sbjct: 446 VTSGTDEPYRMFTSRAEYRLLLRQDNADRRLTAQADELGLIDAARRERFHRKLAEIERGT 505

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL+      +            G T     +L  P+ +   +    P+         E+
Sbjct: 506 ELLQQAKFQPET-----------GPTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQ 554

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             I+  YA Y  RQ  E  +     ++ IP  FDY  +  L NE KEKL+ ++P NL QA
Sbjct: 555 CSIDIKYAGYIDRQQAEVHKQSRHAEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQA 614

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+TPA L L+L +++ N++
Sbjct: 615 KRISGITPADLALVLAHLENNSL 637


>gi|218767114|ref|YP_002341626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis Z2491]
 gi|21263693|sp|Q9JX41|MNMG_NEIMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|121051122|emb|CAM07393.1| glucose inhibited division protein A homolog [Neisseria
           meningitidis Z2491]
 gi|325133107|gb|EGC55779.1| glucose-inhibited division protein A [Neisseria meningitidis M6190]
 gi|325139085|gb|EGC61631.1| glucose-inhibited division protein A [Neisseria meningitidis
           ES14902]
          Length = 628

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/621 (46%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTYEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|325135119|gb|EGC57746.1| glucose-inhibited division protein A [Neisseria meningitidis
           M13399]
          Length = 628

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/621 (45%), Positives = 387/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 362 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|240116644|ref|ZP_04730706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID18]
          Length = 642

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/618 (45%), Positives = 387/618 (62%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++   Q+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPHQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+ LL++++K+
Sbjct: 619 ISGVTPAAVALLMVHLKR 636


>gi|317165423|gb|ADV08964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 655

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/622 (45%), Positives = 388/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 269 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 329 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 389 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 449 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLK 508

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +     + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 509 TTWYAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 567

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 568 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 627

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 628 QASRISGVTPAAVALLMVHLKR 649


>gi|312897435|ref|ZP_07756859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera micronuciformis F0359]
 gi|310621496|gb|EFQ05032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera micronuciformis F0359]
          Length = 639

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/614 (44%), Positives = 384/614 (62%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++   T LIT     I  M CNPAIGG GK HLV+EIDA
Sbjct: 15  TYDVIVVGAGHAGCEAALAAARMKMHTLLITLNLDNIALMPCNPAIGGPGKSHLVKEIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG VAD   IQ R+LN  KGPAV   R Q+D++ Y+  M   + ++ NLDV Q  V
Sbjct: 75  LGGQMGLVADNTAIQMRMLNTGKGPAVYSLRAQSDKKAYQSEMTHILENEANLDVKQLTV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I+  +  +         V+L TGT+L+G I IG   + +G +G   + +L +
Sbjct: 135 TDLIVEDKIVKGVYTELGETFLAKAVILATGTYLKGRIIIGTTVLESGPIGQRSAEALSD 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K+     R KTGTPAR+D +T+  D  EKQ  D     FSF+++++   ++ C +T 
Sbjct: 195 SLKKYGISLMRFKTGTPARIDSRTLRTDSMEKQEGDNEGHAFSFLSERLNRNKVCCWLTY 254

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  + + +G I+  GPRYCPSIE KI+RF ++  HQ+F+EPEGL T+ 
Sbjct: 255 TNERTHEIIRSNLDRAPMCNGVIEGIGPRYCPSIESKILRFADKKRHQLFVEPEGLKTEE 314

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q++F++TIPGLE V I+RPGYAIEYD ++P +L PTLE KKI GL+
Sbjct: 315 MYVQGMSTSLPMDVQYEFLKTIPGLEDVKIMRPGYAIEYDCLDPLQLLPTLEVKKIRGLY 374

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K  K D    +R ++YIGV+IDDL +KG  EPY
Sbjct: 375 SAGQANGTSGYEEAAAQGLIAGINAALKIQKKDPFVLTRAEAYIGVLIDDLVTKGTNEPY 434

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G +LG + + R   F K  +E + L S+LK L +T
Sbjct: 435 RMMTSRSEYRLILRQDNADMRLTEKGRELGLVTDERYAAFCKKKEEVDELLSVLKKLSVT 494

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               ++  +        +T     + L   + +   +  +  + + +   V E ++I   
Sbjct: 495 PTTRTNELLESVGSAPLKTGIKGVDLLRRQEMTYSLMKKLFSELKDYPLDVTEEVEITVK 554

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +  ++   E+RL+P   DY ++  +S+E ++KLS ++P +L QAS+I G+
Sbjct: 555 YEGYIERQREQVAKMNKLEQRLLPDSIDYEAIDTISSEGRQKLSDIRPRSLGQASRISGV 614

Query: 602 TPAALNLLLIYIKK 615
           +PA +  LLIY ++
Sbjct: 615 SPADITALLIYTEQ 628


>gi|16081153|ref|NP_391981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312084|ref|ZP_03593931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221316409|ref|ZP_03598214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221321322|ref|ZP_03602616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325605|ref|ZP_03606899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313662|ref|YP_004205949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis BSn5]
 gi|121187|sp|P25812|MNMG_BACSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|40026|emb|CAA44404.1| unnamed protein product [Bacillus subtilis]
 gi|467385|dbj|BAA05231.1| unknown [Bacillus subtilis]
 gi|2636648|emb|CAB16138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291486740|dbj|BAI87815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. natto BEST195]
 gi|320019936|gb|ADV94922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis BSn5]
          Length = 628

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 381/618 (61%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTLLQGIVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q  +  R   VV+TTGT+LRG I +G L   +G     PS  L   
Sbjct: 128 RLIVEDGECRGVITQTGAHYRAKAVVMTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   TI + KTE Q  D+    FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVKSDTIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI+ L+ 
Sbjct: 308 YVQGLSTSLPEDVQQRMLATIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKITNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG ++G I + R   F K        +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIKP 487

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+ 
Sbjct: 488 SPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPPEVPVPQDVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKNVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|15618527|ref|NP_224813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae CWL029]
 gi|15836149|ref|NP_300673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae J138]
 gi|16752423|ref|NP_444682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae AR39]
 gi|33241974|ref|NP_876915.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae TW-183]
 gi|7674055|sp|Q9Z7T7|MNMG_CHLPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4376914|gb|AAD18756.1| FAD-dependent oxidoreductase [Chlamydophila pneumoniae CWL029]
 gi|7189065|gb|AAF38013.1| gidA protein [Chlamydophila pneumoniae AR39]
 gi|8978989|dbj|BAA98824.1| FAD-dependent oxidoreductase [Chlamydophila pneumoniae J138]
 gi|33236484|gb|AAP98572.1| GidA [Chlamydophila pneumoniae TW-183]
          Length = 611

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/621 (45%), Positives = 379/621 (61%), Gaps = 26/621 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+G S  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   AYDVIVVGAGHAGCEAAYCSAKMGVSVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M+R + +   L ++Q  V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLENTPGLHIMQATV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++ +IS +  ++  M    TVVL++GTF+RG+IHIG      GR+GD  S  L  
Sbjct: 127 ESLLDKEGVISGVTTKEGWMFSGKTVVLSSGTFMRGLIHIGDRNFSGGRLGDPSSQGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIPFSFMTDKITNRQI 238
              K  F   RLKTGTP RL   +I +   E+Q  D       R  PF     +    Q+
Sbjct: 187 DLKKRGFPISRLKTGTPPRLLASSINFSCMEEQPGDLGVGFVHRTEPF-----QPPLPQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T  +T  II  N+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H +FLEPE
Sbjct: 242 SCFITHTMEKTKAIISANLHRSALYGGCIEGVGPRYCPSIEDKIVKFSDKERHHVFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  +Y NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDYI+   + PTLE+K
Sbjct: 302 GLHTQEIYANGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYIHGNVIHPTLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLFL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++
Sbjct: 362 LIEGLFLCGQINGTTGYEEAAAQGLIAGINAVNKVFNRPPFIPSRQESYIGVMLDDLTTQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            + EPYRMFT RAE+R+ LR DNA  RL+  G +LG + E R +   K  Q         
Sbjct: 422 ILDEPYRMFTGRAEHRLLLRQDNACARLSHYGYELGLLSEERYELVKKQNQ--------- 472

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
               L  +       +F+Q G++  +  + LS P+ S   L    P D R   +++   L
Sbjct: 473 ----LLEEEKVRLQKTFRQYGQSVVSLAKALSRPEVSYDMLREAFPNDIRDLGAVLNASL 528

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++E  Y+ Y  RQ I  + ++  E  LIP+D DY  + ALS E +EKL+   P  L  AS
Sbjct: 529 EMEIKYSGYIDRQKILIQSLEKAESLLIPEDLDYKQITALSLEAQEKLAKFTPRTLGSAS 588

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+  A + +L+I +KK+ 
Sbjct: 589 RISGIASADIQVLMIALKKHA 609


>gi|32475791|ref|NP_868785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopirellula baltica SH 1]
 gi|32446334|emb|CAD76162.1| glucose inhibited division protein A (GIDA) [Rhodopirellula baltica
           SH 1]
          Length = 667

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/623 (45%), Positives = 383/623 (61%), Gaps = 21/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAG EAAA AA+LGA TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL
Sbjct: 26  YDVVVIGAGHAGTEAAAAAARLGAKTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDAL 85

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   DA GIQFR+LN +KGPA+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V 
Sbjct: 86  GGLMGEAIDATGIQFRMLNRRKGPAMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVE 145

Query: 126 GFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
              TE             +  + ++ +++    TV+LTTGTFL+ ++H GK +   GR G
Sbjct: 146 DLITEPIADGQDRLANQRVIGVRVRGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAG 205

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +     F   R KTGTP RL+ +TI +   E+Q  D+   PFS++ D I++
Sbjct: 206 EGTTAGLSGALKGMGFTLDRFKTGTPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISS 265

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C I  TN   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FL
Sbjct: 266 PQMACHIAHTNERVHDLIRANLDRAPMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFL 325

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG  T  VY NGIST+LP ++Q    R IPGLEK  I+R GYA+EYDY  P +L+P L
Sbjct: 326 EPEGRQTCEVYVNGISTSLPRDVQDAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHL 385

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E+K +SGLF AGQINGTTGYEEAA QGL+AG+N+AR +        SR D+YIGV++DDL
Sbjct: 386 ESKSVSGLFFAGQINGTTGYEEAAGQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDL 445

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            + G  EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R++RF + + E     
Sbjct: 446 VTSGTDEPYRMFTSRAEYRLLLRQDNADRRLTAQADELGLIDAARRERFHRKLAEIERGT 505

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL+      +            G T     +L  P+ +   +    P+         E+
Sbjct: 506 ELLQQAKFQPET-----------GPTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQ 554

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             I+  YA Y  RQ  E  +     ++ IP  FDY  +  L NE KEKL+ ++P NL QA
Sbjct: 555 CSIDIKYAGYIDRQQAEVHKQSRHAEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQA 614

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+TPA L L+L +++ N++
Sbjct: 615 KRISGITPADLALVLAHLENNSL 637


>gi|325143206|gb|EGC65546.1| glucose-inhibited division protein A [Neisseria meningitidis
           961-5945]
 gi|325197480|gb|ADY92936.1| glucose-inhibited division protein A [Neisseria meningitidis G2136]
          Length = 628

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++   Q+ 
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGSAEMHPHQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     + + S+ V+E
Sbjct: 482 TTWYTPQKLAEDEQIRVFGQKLNREANLHDLLRRPNLDYTALMTLEGAMPSERLSAEVVE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|207080326|ref|NP_001128989.1| protein MTO1 homolog, mitochondrial precursor [Pongo abelii]
 gi|75041983|sp|Q5RB71|MTO1_PONAB RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|55728493|emb|CAH90989.1| hypothetical protein [Pongo abelii]
          Length = 692

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/630 (45%), Positives = 407/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGIIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHTPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S    K +   SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFSSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|241243540|ref|XP_002402151.1| glucose inhibited division protein, putative [Ixodes scapularis]
 gi|215496274|gb|EEC05914.1| glucose inhibited division protein, putative [Ixodes scapularis]
          Length = 665

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/633 (44%), Positives = 401/633 (63%), Gaps = 20/633 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREIDA 64
           YDVI++GGGHAG EAA+ +A++G +T L+TH+  TIG  MSCNP+ GG+GKGHL+REIDA
Sbjct: 39  YDVIIVGGGHAGTEAASASARMGCNTLLLTHRFDTIGEFMSCNPSFGGIGKGHLMREIDA 98

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G++ D +GI +R+LN +KGPAV GPR Q DR LY+  +Q  +    NL ++ G V
Sbjct: 99  LGGVCGKICDLSGISYRILNRRKGPAVWGPRAQIDRTLYKRHIQSYLKDHPNLTILCGSV 158

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                E    K     I ++D S I   +V+LTTGTFLRG I+IG    PAGR+GD P+ 
Sbjct: 159 EDLVLEEGGHKKRCCGIRLEDGSEIYSHSVILTTGTFLRGQINIGLQTYPAGRLGDKPAI 218

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237
            L  +  + +F  GRLKTGTP RLDG+TI +   + Q  D+   PFS+    +      Q
Sbjct: 219 GLAQTLERLEFRLGRLKTGTPPRLDGRTIDYSNLKIQLGDDPPEPFSYSNSSVWIKAEDQ 278

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +   +T T  E   ++MEN+        +I   G RYCPSIE K++RF  R+ HQ++LEP
Sbjct: 279 VPMYLTYTTPEVDALVMENLHLDRHVKEEIT--GVRYCPSIESKVLRFKGRS-HQVWLEP 335

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T VVYPNGIS  LP ++Q + +R +PG   V++IRPGY +EYD+I+P+++ P+LET
Sbjct: 336 EGLDTHVVYPNGISCTLPADVQLKLVRCLPGCRDVDMIRPGYGVEYDFIDPRQVKPSLET 395

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQINGTTGYEEAAAQ + +   S+ K  + D    +R + YIGV++DDLT+
Sbjct: 396 KEVPGLFFAGQINGTTGYEEAAAQ-VSSFCFSSSKVCRKDPFVVTRLEGYIGVLVDDLTT 454

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G LEPYRMFTSRAE+R+SLRPDNAD RLT  G ++GC+   + +   +  +  +  +  
Sbjct: 455 QGTLEPYRMFTSRAEFRLSLRPDNADLRLTERGREVGCVAAEQSRATCEVRRILDEAQHF 514

Query: 478 LKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---DARKFSSLVI 533
           L S V +S   S    +    + + ++A E L  PD +I+++ S+ P   +  +    ++
Sbjct: 515 LGSQVQSSHKWSDLMGLPESTNPQCKSALEMLGNPDVTIEHITSLFPTELETVRSRPDLM 574

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA--LSNELKEKLSILKPFN 591
           +RL+IE+ YA    +Q  E  E++  E   +P D DY   P+  LSNE++ KL   KP  
Sbjct: 575 KRLKIEAMYANLVAQQEKEILELEETEMLQLPCDIDYED-PSLNLSNEIRGKLQAAKPST 633

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           +  AS+I GMTP A+ L L+ + +   KL+ + 
Sbjct: 634 VGAASRIPGMTPVAI-LRLLRLTRQKQKLSSVA 665


>gi|46111425|ref|XP_382770.1| hypothetical protein FG02594.1 [Gibberella zeae PH-1]
          Length = 668

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/629 (44%), Positives = 394/629 (62%), Gaps = 15/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+ GA TALIT K   +G+ SCNP+ GG+GKG ++REID
Sbjct: 32  KPYDVVVIGGGHAGAEACAAAARAGARTALITPKLDNLGTCSCNPSFGGIGKGTIIREID 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GR+ D +G+QF +LN +KG AV GPR Q DR+LY+  M+ E+ S  NL ++   
Sbjct: 92  ALDGLAGRIIDKSGVQFHILNRRKGAAVWGPRAQIDRDLYKKHMKAELTSYPNLSIVLDS 151

Query: 124 VAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V+          +   N IS + ++   ++  + V++TTGTFL G IHIG    PAGR+G
Sbjct: 152 VSDIVLTPQDPTDGASNRISGVRLESGQILPTNKVIITTGTFLGGEIHIGLDAYPAGRLG 211

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S     F  GRLKTGTP R+DG +I ++  EKQ+ D+   PFS++ D +  
Sbjct: 212 EAATFGLSKSLRDAGFQLGRLKTGTPPRIDGASINYEVLEKQYGDDPPSPFSYLNDTVAV 271

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN  TH ++ + +  +      ++  GPRYCPS+E KI+RF ++  H ++
Sbjct: 272 QEQLTCSVTYTNEMTHDVVRDILDKTIHIRETVR--GPRYCPSLESKIIRFADKTRHIVW 329

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG ++ V+YPNG+S  +P E Q Q +RTIPGLE   +++PGY +EYDYI+P+ L  T
Sbjct: 330 LEPEGFDSPVIYPNGLSMTIPAEAQEQVLRTIPGLENSKMLQPGYGVEYDYIDPRGLKST 389

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK ISGL+LAGQINGTTGYEEAA QG++AGIN+ R S  L  +  +R+D YIG+M+DD
Sbjct: 390 LETKAISGLYLAGQINGTTGYEEAAGQGVLAGINAGRSSQGLPGVSLTRSDGYIGIMVDD 449

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSR+E+R++ R DNAD RLTP G + G I ++R   +    Q+ + L
Sbjct: 450 LITKGVTEPYRMFTSRSEFRMAARADNADFRLTPKGHEWGVISDKRWSSYRDERQQMDDL 509

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARKFSS 530
              L+S+ L+           K++   R   + L          ++ L S+ P    +S+
Sbjct: 510 TKSLQSVSLSPNQWIEKGFHLKRNSTRRDGIDMLRLSSTTTRIELEQLASVMPSIMDYSA 569

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V  R+ IE+ YA Y      E K    +E+  IP D DY  +P L+   KE L   KP 
Sbjct: 570 NVRNRVAIEAFYAPYVKIAETERKRFTNDERVRIPIDLDYGEIPGLALSEKEALRAAKPE 629

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           NL QA ++EG+TP+    LL Y+++  V+
Sbjct: 630 NLAQARRVEGVTPSGSLRLLAYVRRQPVR 658


>gi|72383112|ref|YP_292467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. NATL2A]
 gi|123620660|sp|Q46IB4|MNMG_PROMT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72002962|gb|AAZ58764.1| Glucose-inhibited division protein A subfamily [Prochlorococcus
           marinus str. NATL2A]
          Length = 656

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/639 (43%), Positives = 386/639 (60%), Gaps = 24/639 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVVGGGHAGCEAALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   +Q RVLN  +GPAVR  R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGIIGKLADLTALQKRVLNASRGPAVRALRAQTDKRSYAHEMLKILQNTPNLKIREA 127

Query: 123 EVAGFNTEK----------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   E                   I  I     S+     VVLTTGTFL G I IG 
Sbjct: 128 MVTGLEVEHYPNQIDQKTPEIQERIGFIKGIKTYFGSVFHAKAVVLTTGTFLGGRIWIGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLI 224
             + AGR G+  S  L     K  F T RLKTGTPAR+D +TI  D  ++Q +D  ++  
Sbjct: 188 QSMSAGRAGEQASEGLTEELKKLGFTTDRLKTGTPARVDRRTIDLDSLDEQLSDASDKFF 247

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
            F  ++ K +  Q+ C ITRT  +TH++I  N+  + IY G I S GPRYCPSIEDKIVR
Sbjct: 248 SFDPLSWK-SGEQMSCHITRTTKQTHQLIKNNLHLTPIYGGFIDSKGPRYCPSIEDKIVR 306

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +++ HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGL+   ++RP YA+EYD
Sbjct: 307 FADKDSHQIFLEPEGRDTPEMYVQGFSTGLPENLQLELLRTLPGLQNCVMLRPAYAVEYD 366

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           YI   +L  TLETK+ISGL+ AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  + I F R 
Sbjct: 367 YIPATQLEATLETKRISGLYSAGQLNGTTGYEEAAAQGLVAGLNAARLVNNKEGIIFERE 426

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIG MIDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I ERR K F
Sbjct: 427 SSYIGTMIDDLVTKDLKEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDERRWKIF 486

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFS 520
               Q  N  +  L+   +   + S+  I +   G     + T   FL   +   ++L +
Sbjct: 487 NAKQQLINQEKERLEKERIKESDKSAKEI-YSSTGTPIKGSLTLANFLRRTNIHYKDLIT 545

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                +     V E ++I+  Y+ Y  RQ  +  ++K + K+L+PK+ +Y+++  LS E 
Sbjct: 546 FNLTTQSIPLDVEEGVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEA 605

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +EKL+I +P +L  A+++ G++ A L  LL+++K   +K
Sbjct: 606 REKLTISQPKSLGHAAQLPGVSKADLTALLVWLKIEKMK 644


>gi|300871371|ref|YP_003786244.1| tRNA-uridine 5-carboxymethylaminomethyl modification protein GidA
           [Brachyspira pilosicoli 95/1000]
 gi|300689072|gb|ADK31743.1| tRNA-uridine 5-carboxymethylaminomethyl modification enzyme, GidA
           [Brachyspira pilosicoli 95/1000]
          Length = 614

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 389/617 (63%), Gaps = 7/617 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG  T +I+    TIG MSCNP+IGG+ KG +V+E
Sbjct: 1   MNNKYDVIVVGAGHAGIEAALSSARLGMKTLIISINLDTIGQMSCNPSIGGVAKGTIVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +++NL + Q
Sbjct: 61  IDALGGEMGILIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEATKTLYAEDNLTLHQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N++  +  +      C  V+LTTGTFL G+IHIGK +  AGR+G+ P+  
Sbjct: 121 DIVTEVVVENNVVKGLKTERGIEYECQAVILTTGTFLNGLIHIGKYQKQAGRIGELPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  K   + GRLKTGTPAR+D  +I +D  E Q  D+ + PFSF+ DKI   Q  C 
Sbjct: 181 LSDNLRKLGLEVGRLKTGTPARVDYYSINFDILEMQKGDDEITPFSFLDDKIDIVQEPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+   H+II +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E   
Sbjct: 241 ITYTDENIHKIIQDNIHLSPMYSGVITGIGPRYCPSIEDKVVRFADKPRHQLHLERESYR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY NG S++LPE++Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI 
Sbjct: 301 TNEVYINGFSSSLPEDVQIKMIRSLKGLEEVKILKPAYAVEYDYVNPIELKPTLETKKIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGT+GYEEAA QG++AGIN++ K  K +     R+D YIGV+IDDLT+KG  
Sbjct: 361 GLFLAGQINGTSGYEEAACQGIMAGINASLKIKKEEPFILKRSDGYIGVLIDDLTTKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R ++     Q+   L   L   
Sbjct: 421 EPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLEKVRDKKQKTQILVEYLNKR 480

Query: 482 VLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            LT K   +  + F ++ K   T +    +  P+ SI  +  +      ++  V+E  +I
Sbjct: 481 TLTQK--ETEELGFTKEAKEYRTMSLSSIIKRPECSIDMVKHLIDG--DYNKNVLENAEI 536

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  R + E ++I+  EK  IP+DFDYS+L ++  +   KL   KP+N+ QA ++
Sbjct: 537 AIKYEGYIARYLNEIRDIEKYEKMRIPEDFDYSTLKSVKIDAINKLKQYKPYNIAQALRV 596

Query: 599 EGMTPAALNLLLIYIKK 615
             +  + + +L++ + K
Sbjct: 597 PEIDMSVVQVLILTLTK 613


>gi|284050122|ref|ZP_06380332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Arthrospira platensis str. Paraca]
 gi|291570408|dbj|BAI92680.1| glucose inhibited division protein A [Arthrospira platensis
           NIES-39]
          Length = 637

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/619 (44%), Positives = 376/619 (60%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IV+GGGH+GCEAA  AA+LG  T L+T     IG   CNPA+G   K  L  E+DAL
Sbjct: 13  FDIIVVGGGHSGCEAALAAARLGCRTLLLTLNLDKIGWQPCNPAVGAPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL V +G V 
Sbjct: 73  GGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMRQIVENQENLSVREGMVT 132

Query: 126 ----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G N E   I  +         C  V+LTTGTFL G+I +G   +PAGR G+  +  
Sbjct: 133 DLVLGLNDE---IIGVETYFGVAFACQAVILTTGTFLGGIIWVGNKSMPAGRAGEFAAVG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L ++  +  F+TGRLKTGTPAR+D +++ +   E Q  DER+  FSF       R Q+ C
Sbjct: 190 LTDTLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDERVRWFSFDPQVWVEREQMNC 249

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 250 YLTRTTAETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 309

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q + +R++PGLE   ++RP YA+EYDY+   + +PTL TKKI
Sbjct: 310 HIPELYIQGFSTGLPEKLQLEMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKKI 369

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQG+VAGIN+ +     D I F R  SYIG +IDDL +K +
Sbjct: 370 EGLFCAGQINGTTGYEEAAAQGIVAGINAVKLVRGEDMIVFPREQSYIGTLIDDLCTKDL 429

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +  ++ N +    + 
Sbjct: 430 REPYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWQLFQQ--KQANIIAEKQRL 487

Query: 481 LVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                K      I+   D + +     +  E L  P F   NL        + S    E 
Sbjct: 488 DQTRVKERDEIGIAIASDTQQKIKGSISLAELLRRPGFHYGNLEHYNLGNSQLSLEEKEG 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +IE  Y+ Y  RQ  +  +I     R +P+D DY ++  LS E +EKL+ +KP  + QA
Sbjct: 548 AEIEIKYSGYMERQQNQIDQISRHANRQLPQDLDYLTIETLSMESREKLNRIKPLTIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +N LLIY++
Sbjct: 608 SRIGGVNPADINALLIYLE 626


>gi|195346742|ref|XP_002039916.1| GM15919 [Drosophila sechellia]
 gi|194135265|gb|EDW56781.1| GM15919 [Drosophila sechellia]
          Length = 661

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/636 (44%), Positives = 415/636 (65%), Gaps = 31/636 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 G------FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                   +T+    S +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDELDTQARRCSGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 EALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++++VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSNLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+  +D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHIDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQE 470
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F    A+    
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSARYQHFQQTEARLQSA 507

Query: 471 YNFLRSLLKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDAR 526
            + LR L K      +  NL     S +     +TA++ L  P  + +I+ L  + P+  
Sbjct: 508 IDSLRRLRKHTHYWRQALNLPKAKASVE-----KTAFDMLGIPADNITIEKLIQLHPNEL 562

Query: 527 KF---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKE 582
            +      + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++
Sbjct: 563 SWLKGDRNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQ 622

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           KL++++P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 623 KLTLIQPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|295668953|ref|XP_002795025.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226285718|gb|EEH41284.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 695

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/630 (44%), Positives = 388/630 (61%), Gaps = 21/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDAL
Sbjct: 38  YDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREIDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+V 
Sbjct: 98  DGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGKVG 157

Query: 126 GFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                +  +++        + ++   +I    VV+TTGTFL G IHIG    P+GRMG++
Sbjct: 158 DIILSREDLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMGEA 217

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
            +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++    
Sbjct: 218 ATFGLSRSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAVND 277

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H ++
Sbjct: 278 EDQLPCWSTYTNETSHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHIVW 335

Query: 295 LEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           LEPEG    +V+YPNGIS  +P + Q   +RTIPGLE   +++ GY +EYDY++P+ L P
Sbjct: 336 LEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAQMLQAGYGVEYDYVDPRSLRP 395

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+D
Sbjct: 396 TLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFTLSRSDGFIGIMVD 455

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   +   
Sbjct: 456 DLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQITE 515

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR------- 526
           LR+LL++    S   S        D   R+A++ L   D SI ++               
Sbjct: 516 LRTLLENTKFPSTLWSRKGFGVHGDNNLRSAFDLLRLNDISIDDIIPHIESGSGRTYTPL 575

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L  
Sbjct: 576 SFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDEALLLPPDIDYGQVVGLSYEERAALER 635

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++P N+  A +IEGMTP A   LL++++KN
Sbjct: 636 VRPENIGMARRIEGMTPVAALRLLVHVRKN 665


>gi|89889742|ref|ZP_01201253.1| glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Flavobacteria bacterium BBFL7]
 gi|89518015|gb|EAS20671.1| glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Flavobacteria bacterium BBFL7]
          Length = 623

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/624 (43%), Positives = 391/624 (62%), Gaps = 10/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +R YDVIV+G GHAG EAAAVAA +G+ST L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDREYDVIVVGAGHAGSEAAAVAANMGSSTLLVTMNLETIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL GL G V+D + IQF++LN  KGPA+  PRTQ DR  +    + ++ +   LD  
Sbjct: 61  EIDALGGLSGIVSDKSAIQFKMLNQSKGPAMWSPRTQNDRMRFSEEWRMQLEAIPLLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   E   +  +       IR   VVLT GTFL G+IHIG  +   GR G+  S 
Sbjct: 121 QEMVAGLIIEDEKVVGVRTSLGIEIRSKAVVLTNGTFLNGLIHIGDKQFGGGRAGERAST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQI 238
            +    +   F++GR+KTGTP R+DG+++ + K E Q  D     FS+  +T  + N Q 
Sbjct: 181 GITGQLVDLGFESGRMKTGTPPRVDGRSLDYSKMEPQPGDAVTSKFSYSNLTSSLKN-QR 239

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +C +T T+ E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPE
Sbjct: 240 DCHMTYTSPEVHNLLREGFDRSPMFNGRIKSLGPRYCPSIEDKIDRFADKDRHQLFVEPE 299

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST+LPE++Q + +R++ G EKV   RPGYAIEYDY  P +L  TLETK
Sbjct: 300 GWNTCEVYVNGFSTSLPEDVQFKALRSVVGFEKVKFFRPGYAIEYDYFPPTQLKHTLETK 359

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GL+ AGQINGTTGYEEAA+QGL+AGIN+ RK  + +     R ++YIGV++DDL +K
Sbjct: 360 LIDGLYFAGQINGTTGYEEAASQGLMAGINAVRKIREEEPFILKRDEAYIGVLVDDLITK 419

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR  LR DNAD RLTP  + LG + +   KR  +   E   +   L
Sbjct: 420 GTEEPYRMFTSRAEYRTLLRQDNADLRLTPRAVDLGIVTDESLKRVERKATESEKMVQFL 479

Query: 479 KSLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSL 531
           +      K +++  ++   KQ  +    ++  S P  +++++ +I               
Sbjct: 480 RDTSYDFKEMNNLLVAKGSKQVTQNDKLFKVFSRPQVNLEDIKTISQVKGYLKENDLDDD 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E++++   YA Y  ++   A ++   E   IP D+D+ S+ +LS E +EKL+ ++P  
Sbjct: 540 ILEQVEVHVKYAGYIAKEKDNADKLHRLENVKIPSDYDFKSIKSLSYEAREKLTTIQPAT 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +++LL+++ +
Sbjct: 600 VSQASRISGVSPSDISVLLVHMGR 623


>gi|195382695|ref|XP_002050065.1| GJ21932 [Drosophila virilis]
 gi|194144862|gb|EDW61258.1| GJ21932 [Drosophila virilis]
          Length = 659

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/635 (43%), Positives = 412/635 (64%), Gaps = 28/635 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 27  YDVVVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ +  NL +    V 
Sbjct: 87  DGVCARCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQQELFNTPNLQIRAAAVD 146

Query: 126 GFNTEKNIISS-------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               + +  ++       +++ D  ++   TVVLTTGTFLR  I+IG     AGRMGD P
Sbjct: 147 NLQIDADETANGGARCNGVLLSDGELVHSRTVVLTTGTFLRAHINIGLEVKEAGRMGDKP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
           + +L  +  +  F  GRLKTGTP R+   ++ + K EK  AD+   PFSF+  ++    +
Sbjct: 207 AKALGEALNRLGFRMGRLKTGTPPRIAKNSVDFSKLEKHEADDPPTPFSFLNHEVWLSAS 266

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T    + I+ +N+  +   + ++   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQLPCYLTYTTPRVNEIVRDNLHVNRHVTEEVT--GPRYCPSIESKVLRFGARV-HQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ + YP GIS  LP   Q + +  I GLE+  +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLCYPQGISCTLPHAQQVELVHAIKGLEQAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMID 413
           ETK++SGLF AGQ+NGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+ID
Sbjct: 384 ETKRVSGLFFAGQLNGTTGYEEAAAQGIIAGANAAGKTLHQDGRQLHISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E+R + F    Q  + 
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTEKGYQFGLVSEQRYRHFQ---QTEHK 500

Query: 474 LRSLLKSL--VLTSKNLSSTSISFKQDGKT--RTAYEFLSYP--DFSIQNLFSICPDARK 527
           L++ +++L  +    N    ++   Q   +  ++A++ L+ P  + S+  L  +CP    
Sbjct: 501 LKTGIEALRGLQKHSNFWRQALGLPQAKVSIQKSAFDMLAVPADNISVNQLIDLCPSELS 560

Query: 528 F---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEK 583
           +    + +  RL+IE+ Y+ +   Q  + ++++ EE   IP D DY S   +LSNE ++K
Sbjct: 561 WLRDDNDLATRLKIEALYSFFVDEQQRDVEDVRREESLCIPGDIDYFSKSLSLSNEERQK 620

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           L++++P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 621 LTLIQPQTIAAASRIQGVTPSTILRILKYVKKADV 655


>gi|289436061|ref|YP_003465933.1| glucose inhibited division protein A [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289172305|emb|CBH28851.1| glucose inhibited division protein A [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 629

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/619 (43%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIENGVCKGVITNSGAIYYAETVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  DE    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDEHARAFSFDTVEMIMDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGRNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  K + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFKKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGYEIGLISDERYERFLAKQSAIEAEKTRLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  V E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYNKIAEIVSRETSVTDDVAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIEKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|330444143|ref|YP_004377129.1| glucose-inhibited division protein A [Chlamydophila pecorum E58]
 gi|328807253|gb|AEB41426.1| glucose-inhibited division protein A [Chlamydophila pecorum E58]
          Length = 612

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/618 (45%), Positives = 376/618 (60%), Gaps = 18/618 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AAK+GA   ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAYCAAKIGALVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D  GIQFR+LN  KGPAVR PR Q D++LY + M+R +   ENL ++QG V
Sbjct: 67  LGGIMAEVTDQTGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEKTENLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +++ IS +  ++       TVVL++GTF++G+IHIG+     GR+GD  S  L +
Sbjct: 127 VSLLDKESCISGVTTKEGVTYLGKTVVLSSGTFMQGLIHIGERNFSGGRLGDPASLGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           S  +  F  GRLKTGTP RL   +I +   E+Q  D   + F    +       QI C I
Sbjct: 187 SLRQRGFPLGRLKTGTPPRLLASSIDFSSMEEQPGDPG-VGFVHRNEPFVPPLPQISCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   T +II EN+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IFLEPEGL T
Sbjct: 246 THTTSATKQIIEENLHCSALYGGRIEGVGPRYCPSIEDKIVKFADKERHHIFLEPEGLYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y NG+ST++P +IQ Q I ++ GLE   I+RP YAIEYDYI+   +  TLE+K I G
Sbjct: 306 QEIYANGLSTSMPCDIQRQIIHSVRGLEAAVIMRPAYAIEYDYIHGNVIHATLESKIIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLNRSPFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL   G  LG + + R          Y F ++    L 
Sbjct: 426 PYRMFTGRAEHRLLLRQDNAGTRLAQYGYDLGLLSKER----------YEFFQNQKVRLE 475

Query: 483 LTSKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
              + L  T   FK+ +    +  + L  P+ S   L  I P D +    ++   L++E 
Sbjct: 476 EEKQRLQKT---FKKYENSVVSLAKVLCRPEVSYDALQKIFPEDVQDLGPVLNASLEMEI 532

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ      +   E+  IP+D DY ++  LS E KEK +   P  L  AS+I G
Sbjct: 533 KYAGYISRQQTLISNLAKSEETAIPEDLDYQAIVGLSLEAKEKFTKFTPRTLGSASRISG 592

Query: 601 MTPAALNLLLIYIKKNTV 618
           ++ A + +L+I +KK+ +
Sbjct: 593 ISSADIQVLMIALKKHAL 610


>gi|255527593|ref|ZP_05394457.1| glucose inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296186791|ref|ZP_06855192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
 gi|255508726|gb|EET85102.1| glucose inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296048505|gb|EFG87938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
          Length = 629

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 386/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEA   +A++G  T + T    ++G M CNP +GG  KGHLVREIDAL
Sbjct: 8   YDVVVIGAGHAGCEAGLASARMGCKTLMCTMNLDSVGFMPCNPNVGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  I  ++NL + Q EV 
Sbjct: 68  GGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHVIEKEKNLYLRQIEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  ++ ++ +  +   VVLTTGT+LRG I IG++    G  G  P+N L   
Sbjct: 128 DIKVENNKVCGVLTKNGAYFKTKAVVLTTGTYLRGKIIIGEVSYSGGPSGLFPANELSQK 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++   K  +Q  DE+++PFSFM+D I   Q+ C +T T
Sbjct: 188 LIDLGIELRRFKTGTPARVNRRSVDLSKMIEQKGDEKIVPFSFMSDNIDRDQVSCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +T ++I +NI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG NT+ +
Sbjct: 248 TDDTLKVIRDNIHRSPLYNGTIKSVGPRYCPSIEDKVMRFPDKEKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S++LPEE+Q    +TI GLE V I+R  YAIEYD INP++L  +LE K I GLF 
Sbjct: 308 YVGGASSSLPEEVQLAMYKTIEGLENVEILRTAYAIEYDCINPQQLKLSLEFKSIEGLFG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEAAAQG++AGIN++ K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGSSGYEEAAAQGIIAGINASLKIKEKEPLILKRSDAYIGVLIDDLVTKGTEEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR+EYR+ LR DNAD RLT IG  +G + E R  +F K  +      + +K++ +  
Sbjct: 428 MMTSRSEYRLILRQDNADLRLTEIGHNIGLVNEERYNKFLKRKKTIEEEVARMKNIQVNP 487

Query: 486 K--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           K        +L+ST +      K+ + YE +  P+     +  +  D  +    + E + 
Sbjct: 488 KKEVIEFLVSLNSTELK-----KSISLYELIKRPELDYFKVEPLDNDRIELPDDIKEEVN 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
             S Y  Y  +Q+ +  + K  E + IP + DY+ +  L  E  +KLS +KP N+ QAS+
Sbjct: 543 TISKYEGYINKQLEQVVQFKKFENKTIPDNIDYNDINGLRLEAVQKLSKVKPMNIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLIY+++
Sbjct: 603 ISGVSPADISVLLIYLER 620


>gi|240129081|ref|ZP_04741742.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 642

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 388/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 256 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 316 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 376 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ + + F +  +        LK
Sbjct: 436 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGKAQWRMFNEKREAVEREIQRLK 495

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +     + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 496 TTWYAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 554

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 555 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 614

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 615 QASRISGVTPAAVALLMVHLKR 636


>gi|299136307|ref|ZP_07029491.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX8]
 gi|298602431|gb|EFI58585.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX8]
          Length = 697

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/683 (43%), Positives = 389/683 (56%), Gaps = 76/683 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DV+++G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KGHLVRE
Sbjct: 3   FSEQFDVLIVGAGHAGCEAAVAAARMGLRTALFTLNLDLIAQMSCNPAIGGVAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG VADA GIQFR+LN  +GPAV  PR Q D+ LYR+ M+ ++ S  NL + Q
Sbjct: 63  VDALGGIMGEVADACGIQFRLLNTSRGPAVWSPRAQCDKALYRVKMREKLESIPNLFIKQ 122

Query: 122 GEVAGFNTE-----------------------------------KNIISSIVMQDNSMIR 146
            EV     E                                   ++ I+ + ++D   I 
Sbjct: 123 AEVIDLVIESESASQQVSEPALKGTGLSPSVQATPVVGALAPEGRHRITGVKLRDGRTIA 182

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +V++TTGTFL G+IH G+ +  AGR G+  S  L  S  K      RLKTGTP RLDG
Sbjct: 183 ARSVIVTTGTFLNGLIHCGEQQYTAGRSGEPASVLLGESLKKLGLRETRLKTGTPPRLDG 242

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITN--------RQIECGITRTNLETHRIIMENIK 258
           +TI W K E+Q  D    PFSF +             RQI C I  T  ET ++I +N+ 
Sbjct: 243 RTIDWGKFEEQPGDTDPTPFSFRSAPTDGEPTWTPPLRQISCHIATTTPETLQLIRDNVH 302

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
            S +++G I+  GPRYCPSIEDKIVRF ++  HQ FLEPEGLNT  VY NG+ST+LP E+
Sbjct: 303 RSPMFTGQIEGIGPRYCPSIEDKIVRFPDKTSHQFFLEPEGLNTHEVYINGMSTSLPMEV 362

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   + +IPGLE   ++RPGYAIEYD I+P EL  TL  KK  GL+LAGQINGT+GYEEA
Sbjct: 363 QAAMVHSIPGLENAEMLRPGYAIEYDAIDPTELDRTLRVKKFEGLYLAGQINGTSGYEEA 422

Query: 379 AAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           A QGL+AGIN+A       +     RT++Y G++IDDL SKG  EPYRMFTSRAE+R+ L
Sbjct: 423 ACQGLMAGINAALHAKGTAETFTLDRTEAYTGILIDDLISKGTDEPYRMFTSRAEFRLHL 482

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK 496
           R DNAD RLTP G +LG I +     F AK  +   F R LL++  LT  +L +      
Sbjct: 483 RIDNADVRLTPHGRQLGLIDDTAWDNFEAKQARAAAFTR-LLETTRLTDGDLQALEALSS 541

Query: 497 QDGKTRTAY-------EFLSYPDFSIQNLF--------SICPDARKFSSLVI-------- 533
            +      Y       + L  P  +I+ L         +I   A   S+L          
Sbjct: 542 SEPSAAQTYTRGDLFSQLLKRPAITIEQLLPLLVTRMGAISEFAPWLSALTAANYPQTLP 601

Query: 534 -----ERLQIESS--YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                E   +E+   +A Y  +Q    + ++ +E R IP  FDY +   LS E+ EKLS 
Sbjct: 602 AWVRNEMKTVETGIKFAGYLAQQQRSMERLRKDEARAIPDWFDYRACSGLSREMVEKLSR 661

Query: 587 LKPFNLLQASKIEGMTPAALNLL 609
           ++P  L QAS++ G+TPAA+ L+
Sbjct: 662 VRPSTLGQASRMSGVTPAAVTLI 684


>gi|225678539|gb|EEH16823.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 695

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/630 (44%), Positives = 390/630 (61%), Gaps = 21/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDAL
Sbjct: 38  YDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREIDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+V 
Sbjct: 98  DGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGKVG 157

Query: 126 GFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                +  +++        + ++   +I    VV+TTGTFL G IHIG    P+GRMG++
Sbjct: 158 DIILSREDLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMGEA 217

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
            +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++    
Sbjct: 218 ATFGLSKSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAVND 277

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H ++
Sbjct: 278 EDQLPCWSTYTNEASHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHIVW 335

Query: 295 LEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           LEPEG    +V+YPNGIS  +P + Q   +RTIPGLE  ++++ GY +EYDY++P+ L P
Sbjct: 336 LEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAHMLQAGYGVEYDYVDPRSLRP 395

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+D
Sbjct: 396 TLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFILSRSDGFIGIMVD 455

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   +   
Sbjct: 456 DLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQITE 515

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR------- 526
           LR+LL++    S   S        D   R+A++ L   D SI ++      +        
Sbjct: 516 LRTLLENTKFPSALWSRKGFGVHGDNNLRSAFDLLRLNDTSIDDIIPHIESSSGRTYTPL 575

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L  
Sbjct: 576 SFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDESLLLPPDMDYGQVVGLSYEERAALER 635

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++P N+  A +IEGMTP A   LL+++++N
Sbjct: 636 VRPENIGMARRIEGMTPVAALRLLVHVRRN 665


>gi|145631884|ref|ZP_01787641.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R3021]
 gi|144982487|gb|EDJ90050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R3021]
          Length = 505

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/484 (53%), Positives = 327/484 (67%), Gaps = 1/484 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 HTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK ISGL
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSISGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWVRFNQKMENIELERQRLRSIWL 485

Query: 484 TSKN 487
             ++
Sbjct: 486 HPRS 489


>gi|119510372|ref|ZP_01629507.1| glucose-inhibited division protein A [Nodularia spumigena CCY9414]
 gi|119465009|gb|EAW45911.1| glucose-inhibited division protein A [Nodularia spumigena CCY9414]
          Length = 638

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 375/618 (60%), Gaps = 11/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 10  AFDVIVVGAGHSGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
           L G +G+VAD   +Q R+LN  +GPAV   R Q+D+  Y   M+  + +QENL + +   
Sbjct: 70  LGGEIGKVADRTYLQKRILNSSRGPAVWALRAQSDKREYAAVMKTIVENQENLSIREAMA 129

Query: 124 ---VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
              V G N E   +  +         C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 130 TDLVLGANDE---VIGVETYFGVAFGCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K   Q  DE +  FSF  D  I   QI 
Sbjct: 187 GLTQTLNRLGFETGRLKTGTPARVDKRSVDYSKMTIQPGDEEVRWFSFDPDVWIKKEQIP 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETHR+I +N+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 247 CYITRTTAETHRLIRDNLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKQSHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 307 RDIPELYIQGFSTGLPETLQLQMLRSLPGLENCTMLRPAYAVEYDYLPATQCYPTLMTKK 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 367 ISGLFCAGQINGTTGYEEAAAQGIVAGINAARLVRGEEMIVFPREHSYLGTLVDDLCTKD 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR   F     +    ++ L 
Sbjct: 427 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWNLFTDKQTQITTEKARLY 486

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +  S+S +    + T  E L  P F   +L S             E  
Sbjct: 487 ATRIKEHDEIGQAIASVSQQTIKGSITLAELLRRPGFHYVDLDSYGLGNPNLKQAEKEGA 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  +  R +P D DY+++  LS E +EKLS +KP  L QAS
Sbjct: 547 EIDIKYSGYLARQQNQIEQIARQAHRQLPADLDYTTIDTLSKEAREKLSKVKPLTLGQAS 606

Query: 597 KIEGMTPAALNLLLIYIK 614
           +  G+ PA +N LLIY++
Sbjct: 607 RTGGVNPADINALLIYLE 624


>gi|88705406|ref|ZP_01103117.1| Glucose-inhibited division protein A [Congregibacter litoralis
           KT71]
 gi|88700496|gb|EAQ97604.1| Glucose-inhibited division protein A [Congregibacter litoralis
           KT71]
          Length = 618

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/596 (45%), Positives = 373/596 (62%), Gaps = 11/596 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G +T L+TH   T+G MSCNPAIGG+GK HLVREIDAL G M +  D AGIQFRVLN +
Sbjct: 1   MGCATLLLTHSVDTLGQMSCNPAIGGIGKSHLVREIDALGGAMAKATDQAGIQFRVLNNR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LYR A++  I +Q  L V Q  V     E + +  +V Q     +
Sbjct: 61  KGPAVRATRAQADRVLYRNAIRAIIEAQVGLQVFQQAVDDLIIENDTVQGVVTQTGLRFK 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGTFL G +HIG  +   GR GD PSN+L     +  F   RLKTGTP RLD 
Sbjct: 121 APRVILTTGTFLGGKMHIGLTRSAGGRAGDPPSNTLAERLRELPFRVERLKTGTPPRLDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSG 265
           ++I  D  EKQ+ D      SF+ D+  +  Q  C +  TN  TH II   +  S +Y+G
Sbjct: 181 RSIDLDSLEKQWGDTPRPVMSFLGDRREHPEQRCCWVAYTNERTHEIIRAGLDRSPLYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPS+EDK+ RF ++  HQ+F+EPEGL T+ +YPNGIST+L  ++Q + +R+
Sbjct: 241 VIEGEGPRYCPSVEDKVQRFADKASHQVFVEPEGLTTNELYPNGISTSLSFDVQMELVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G E  +I RPGYAIEYD+ +P++L  +LET+ ++GL+ AGQINGTTGYEEAAAQGL+A
Sbjct: 301 IKGFENAHITRPGYAIEYDFFDPRDLLSSLETRSVAGLYFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    +    C  R ++Y+GV++DDL + G  EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 361 GINAALAIREEAPWCPRRDEAYLGVLVDDLITMGTKEPYRMFTSRAEHRLLLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF------KQDG 499
           LT  G KLG + + R ++F++   + + + S  + L  T     ST+         K   
Sbjct: 421 LTEQGRKLGLVNDERWEQFSR---KRDIIVSEQQRLSRTFVQPGSTAARSLIGKLGKPLS 477

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
           +  +  E L  P+    ++ ++  DA       ++ + I++ YA Y  RQ  E   ++  
Sbjct: 478 REYSYAELLKRPELDYSDIAALDSDAVDHEQAALQ-VSIQAKYAGYIDRQRDEIDRVRRY 536

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           E   +P D DY  +  LSNE+++KL   KP  L +AS+I G+TPAA++LLL+++K+
Sbjct: 537 EGLSLPVDMDYLQVSGLSNEVRDKLIAQKPETLGRASRIPGVTPAAISLLLVHMKR 592


>gi|268687460|ref|ZP_06154322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268627744|gb|EEZ60144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 631

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/622 (45%), Positives = 388/622 (62%), Gaps = 14/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+     ++  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNAEMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IEGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ + + F +  +        LK
Sbjct: 425 LNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGKAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           +     + L+      +  ++  +    ++ L  P+     L ++    P  R  S+ V+
Sbjct: 485 TTWYAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSER-LSAEVV 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + 
Sbjct: 544 EQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+TPAA+ LL++++K+
Sbjct: 604 QASRISGVTPAAVALLMVHLKR 625


>gi|74024895|ref|NP_036255.2| protein MTO1 homolog, mitochondrial isoform a [Homo sapiens]
 gi|18644895|gb|AAG42814.3| MTO1 protein [Homo sapiens]
 gi|55961489|emb|CAI14880.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|112180532|gb|AAH11051.2| Mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569147|gb|EAW48762.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_c [Homo sapiens]
 gi|193786654|dbj|BAG51977.1| unnamed protein product [Homo sapiens]
          Length = 692

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/630 (45%), Positives = 406/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|21739274|emb|CAD38685.1| hypothetical protein [Homo sapiens]
          Length = 681

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/630 (45%), Positives = 406/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 26  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 85

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 86  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 145

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 146 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 205

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 206 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 265

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 266 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 322

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 323 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 382

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 383 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 442

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 443 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEE 502

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 503 GISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 561

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 562 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 621

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 622 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 651


>gi|194291177|ref|YP_002007084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225012|emb|CAQ71023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 652

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/627 (45%), Positives = 386/627 (61%), Gaps = 15/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   KEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q     R   VVLT GTFL G IH+G      GR GD  + SL 
Sbjct: 125 VDDLMVEGDRVVGAMTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
                     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + +Q+ C 
Sbjct: 185 ARLKDLKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL 
Sbjct: 245 ITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K I 
Sbjct: 305 TNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIR 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDPWTPRRDQAYLGVLVDDLITRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     LKS 
Sbjct: 425 EPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDARWDAFNRKRDAVSRETERLKST 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA-----RKF 528
            +    L    +  +  K   +  +  + L  P+ S + L ++      P+A        
Sbjct: 485 WVNPSMLPAEEAVPLLGKPIEREYSLADLLRRPEVSYEALMALQGGRHAPEAPLDAEPML 544

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +  + E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+  +
Sbjct: 545 AEQIREQIEIGIKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLNQHR 604

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G+TPAA++LLL+++KK
Sbjct: 605 PETLGQASRISGVTPAAVSLLLVHLKK 631


>gi|301762402|ref|XP_002916620.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 692

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/643 (46%), Positives = 418/643 (65%), Gaps = 28/643 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  NFDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ +RVLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYRVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLAVQEGAV 155

Query: 125 AGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                      +  K  +S +V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD
Sbjct: 156 EDLILTDPEPEHAGKCRVSGVVLADGSTVHAESVVLTTGTFLRGVIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            PS  L  +  K  F  GRLKTGTP R+  +++ +    KQ  D   IPFSF+ + +  +
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNPSIPFSFINETVWIK 275

Query: 237 ---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I++EN+  ++      +  GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLENLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  II+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIKGLEKAKIIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LFLAGQINGTTGYEEAAAQG++AGIN++ +  +      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFLAGQINGTTGYEEAAAQGVIAGINASLRVKRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G K +GC+ +RR +R +       
Sbjct: 453 DLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEVGCVSQRRYERASWMKSSLE 512

Query: 473 FLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RK 527
              S+LKS+  +S    K + + SIS  +    R A + L Y +  ++ L    P+  +K
Sbjct: 513 EGISVLKSIEFSSSKWKKLIPAASISIGKSLPLR-ALDVLKYEEVDMKLLAKAVPEPLKK 571

Query: 528 FSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEK 583
           +     + ERL+IE++Y +    Q  E KE++ +E   +PKD DY +L   +LS E++EK
Sbjct: 572 YIKCRELAERLKIEATYESVLLHQQQEIKEVQQDEALQLPKDLDYLTLRDVSLSYEVREK 631

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNEI 623
           L   +P  +  AS+I G+TPAA+  LL ++K   +  + +NE+
Sbjct: 632 LHFSRPETIGAASRIPGVTPAAIINLLRFVKTTQQRQMAMNEL 674


>gi|300857410|ref|YP_003782394.1| glucose inhibited division protein A [Clostridium ljungdahlii DSM
           13528]
 gi|300437525|gb|ADK17292.1| glucose inhibited division protein A [Clostridium ljungdahlii DSM
           13528]
          Length = 628

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/614 (43%), Positives = 383/614 (62%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEA   AA++G  T + T    ++G M CNP +GG  KGHLVREIDAL
Sbjct: 8   YDVIVVGAGHAGCEAGLAAARMGCKTLVCTMNLDSVGFMPCNPNVGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y + M+  +  Q NL + Q EV 
Sbjct: 68  GGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKNYSVRMKEVLEKQNNLSLRQIEVL 127

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              T+ K  +  ++ ++ +     TVVL TGT+L+G + IG +   +G  G  P+N L  
Sbjct: 128 SIRTDDKGKVCGVLTKNGAYFETKTVVLATGTYLKGKVIIGDVSYSSGPNGFMPANDLSQ 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  +   QI C +T 
Sbjct: 188 SLLDLGIELRRFKTGTPARVNKRSVDFSKMIEQPGDKKIVPFSFMSGSLDRSQISCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   T ++I +NI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG NTD 
Sbjct: 248 TTENTLKVIRDNINRSPLYNGSIKSVGPRYCPSIEDKVMRFPDKEKHQIFIEPEGENTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y +G ST++PE++Q    RTI GLE V  +R GYAIEYD INP +L  +LE KK+ GLF
Sbjct: 308 LYVDGASTSMPEDVQIAMYRTIAGLENVEFLRTGYAIEYDCINPTQLKLSLEFKKVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAA+QG++AGIN+A KS     +   R+D YIGV++DDL +KG  EPY
Sbjct: 368 GAGQLNGSSGYEEAASQGIIAGINAALKSQGNPPLILKRSDGYIGVLVDDLVTKGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  ++ K   +       +K + +T
Sbjct: 428 RMMTSRAEYRLILRQDNADLRLTELGHKIGLVSEERYGKYLKRKSDIEKEVERIKDIHIT 487

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K        SI   +  KT + YE +  P+     +  +  D  +    + E + I S 
Sbjct: 488 PKKEVVDFLNSIGSSELKKTTSLYELIKRPELDYFKVQPLDVDRPELGEDIQEEVNIISK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E ++IP+D +Y  +  L  E  +KL  ++P ++ QAS+I G+
Sbjct: 548 YEGYIEKQLEQVSQFKKFENKIIPEDINYDKINGLRIEATQKLKKIRPMSVGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLIY++K
Sbjct: 608 SPADISVLLIYMEK 621


>gi|257460598|ref|ZP_05625699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter gracilis RM3268]
 gi|257441929|gb|EEV17071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter gracilis RM3268]
          Length = 630

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/619 (45%), Positives = 380/619 (61%), Gaps = 9/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA+  AAK+GA T LIT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 3   YDVIVVGGGHAGIEASLAAAKMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  ADA G+QFR+LN  KGPAVRG R Q D + YR+ M+  +L+ + LD+ Q E+A
Sbjct: 63  GGQMGLAADACGLQFRILNESKGPAVRGSRAQIDMDEYRIYMRNLLLNTQGLDISQ-EIA 121

Query: 126 G--FNTEK---NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                 E+     +  +     ++     +++T GTFL G+IH+G+ K+ AGR+G+  S 
Sbjct: 122 SEILTCEQGGEQRVCGVKSHLGNVYETERLIITAGTFLNGLIHVGENKLQAGRVGELASV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S        GRLKTGT  R+D KTI +   E+Q  D    PFSF +     +Q+ C
Sbjct: 182 ELAESLRSLGLQMGRLKTGTCPRIDAKTIDFSVLERQDGDADPRPFSFRSKDFAPKQLAC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN  TH II EN   + +++G I S GPRYCPSIE KI  F  R+ H +F+EP+  
Sbjct: 242 FIAYTNERTHEIIRENFTRAPMFTGQISSTGPRYCPSIETKIYEFPNRDRHHVFVEPQTR 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q  F+RTI G E   I+RPGYAIEYD+I+P EL  +LETKKI
Sbjct: 302 EATEYYVNGLSTSLPYDVQIAFLRTIRGFENAKIVRPGYAIEYDFIDPTELKHSLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL+AGIN+         +   R ++YIGV+IDDL +KG 
Sbjct: 362 RGLFLAGQINGTTGYEEAAAQGLMAGINAVLDLRGRQPLILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLK 479
            EPYRMFTSRAE+R+ LR  NA  RL+  G ++G + E   +R +K+  +    +  LLK
Sbjct: 422 NEPYRMFTSRAEFRLLLREGNAVLRLSEYGREIGLLDEASYERASKFKHDVQSGMEFLLK 481

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +  SK   S   SI  +   ++ +  +  S   FS   L ++ P  + FS  V++ + 
Sbjct: 482 TQITPSKQTLSLLQSIGAEPISQSCSLQKIASQSGFSKAGLLALVPHFKGFSDEVLDEIL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            +  Y  Y   Q  E + +K      IP   D+S +  LSNE+ +KL+   P  L  AS+
Sbjct: 542 TQCKYHFYIAMQRAEVERMKGLLDVAIPPQIDFSKIGGLSNEIVQKLNRFAPPTLFAASE 601

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++L IYIK+N
Sbjct: 602 ISGVTPAAIDILHIYIKQN 620


>gi|194880728|ref|XP_001974514.1| GG21052 [Drosophila erecta]
 gi|190657701|gb|EDV54914.1| GG21052 [Drosophila erecta]
          Length = 661

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/634 (44%), Positives = 414/634 (65%), Gaps = 27/634 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                   +TE    + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTEARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKNSVDYSQLQRHEGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSPLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHGDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F    Q    L
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTKKGYEFGLVSSDRYQHFQ---QTEERL 504

Query: 475 RSLLKSLVLTSKNL----SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF 528
           +S ++SL    K+      +  +   +    +TA++ L  P  + +I+ L  I P+   +
Sbjct: 505 QSAIESLRQLRKHTHFWRQALDLPKAKASVEKTAFDMLGIPADNITIEQLIQIHPNELSW 564

Query: 529 ---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKL 584
                 + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL
Sbjct: 565 LKGERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKL 624

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++++P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 625 TLIQPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|303327868|ref|ZP_07358308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862229|gb|EFL85163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio sp. 3_1_syn3]
          Length = 646

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/630 (43%), Positives = 375/630 (59%), Gaps = 17/630 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D I+ GGGHAG EAA   A+LG S  LI+     +G +SCNPAIGGL KGH+VR
Sbjct: 1   MPDAGFDCIIAGGGHAGSEAAVALARLGFSVLLISGNLDRLGYLSCNPAIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MG  ADAAGIQFR LN+ KGPAVR  R Q DR+ Y+  +++ + +   L + 
Sbjct: 61  EIDALGGMMGLWADAAGIQFRTLNMSKGPAVRATRAQMDRDAYQRVLKKTLYATPGLRLW 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V    T+   ++ +            V+LTTGTFL G IHIG   +P GR+GD+P+ 
Sbjct: 121 QDTVTDVVTDAGRVTGVRTAQGLEFTARHVLLTTGTFLDGRIHIGLTNLPGGRLGDAPAL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S      + GRLKTGT  RL   +I + + E+Q  D     FSF        Q+ C
Sbjct: 181 GLSDSLRALGLELGRLKTGTTPRLLRSSIDFSRLEEQRGDTPPPAFSFHGPGPVLPQVSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T+  TH II      S +++G I+  G RYCPSIEDK+ RF +R  HQIFLEPEGL
Sbjct: 241 HITWTSGRTHEIIRGGFDRSPLFTGVIQGVGARYCPSIEDKVARFPQRERHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  VY NGIST+LP ++Q   +R+IPGLE   ++RPGYAIEYDY+NP +L PTLE+K +
Sbjct: 301 DSAEVYANGISTSLPLDVQMAMLRSIPGLEGAVMVRPGYAIEYDYVNPVQLRPTLESKNV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEAAAQGL A +N  R   +L      R  +Y+ V++DDL + G 
Sbjct: 361 PGLWLAGQINGTSGYEEAAAQGLWAALNIVRAEKELPPFAPGRDAAYMAVLVDDLVTLGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLTP+G  LG +G+   + F +  +    L+  L++
Sbjct: 421 QEPYRMFTSRAEHRLLLREDNADARLTPLGRDLGLVGDAHWRAFCEKRENAERLKKHLEN 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLVIE- 534
           + + +      + +    G  R+  + L  PD  ++ L ++      P A   + L  E 
Sbjct: 481 MRIPADKQDENNDAALPPG--RSLEDVLRRPDMDLERLAAVLAASPGPLAGLGAELAAEL 538

Query: 535 ---------RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                     +Q +  YA Y  RQ          E   +P D DY+ +  LS E++EKLS
Sbjct: 539 ERCGRTVYGGVQTDIKYAGYLERQRALIARTARLEATALPSDLDYARVAGLSREVEEKLS 598

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P NL QA +I G+TPAA+  L I++ K
Sbjct: 599 RVRPLNLGQAGRISGVTPAAVACLEIHLHK 628


>gi|15676120|ref|NP_273251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis MC58]
 gi|7225413|gb|AAF40650.1| glucose inhibited division protein A [Neisseria meningitidis MC58]
          Length = 631

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNADMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 365 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 485 TTWYTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 605 ASRISGVTPAAVALLMVHLKR 625


>gi|317968240|ref|ZP_07969630.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CB0205]
          Length = 640

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/623 (43%), Positives = 383/623 (61%), Gaps = 4/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+DAL
Sbjct: 12  FDVIVVGGGHAGCEAAITAARLGCSTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + +  V 
Sbjct: 72  GGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREAMVT 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E   I  +     S      V+LT GTFL G I +G   + AGR G+  +  L  +
Sbjct: 132 GLVVEDAAIQGVRTYFGSTYSAGAVILTAGTFLGGQIWVGHQSMSAGRAGEQAAEGLTEA 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIECGITR 244
             +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF  T  ++  Q+ C ITR
Sbjct: 192 LQELGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPTSWVSGEQMSCHITR 251

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF  ++ HQIFLEPEG +T  
Sbjct: 252 TTAATHQLIKDNLHLTPIYGGVIDSKGPRYCPSIEDKIVRFAGKDSHQIFLEPEGRDTPE 311

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   +L P+LETK++ GLF
Sbjct: 312 IYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPATQLKPSLETKRVKGLF 371

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAAAQGLVAG+N+ R+  + + + F R  SYIG MIDDL +K + EPY
Sbjct: 372 SAGQLNGTTGYEEAAAQGLVAGLNAVRQLRQQEPVHFPREGSYIGTMIDDLITKDLREPY 431

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + + +  +     +  L+S+ L 
Sbjct: 432 RVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWEIYQRKQEAIEAEKQRLESVRLK 491

Query: 485 SKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  + +++ +     +   T  + L  P F   +L        +    V E  +I+  
Sbjct: 492 VSDPVAPAVAEETKAAIKGSITLADLLRRPGFHSGDLVRHGLAEAELPLDVREGAEIDIK 551

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  +  ++K + +R IP+  DY  +  LS E +EKLS ++P NL QAS+I G+
Sbjct: 552 YSGYLARQQQQIDQLKKQAERRIPEGIDYEQIGTLSREAREKLSAIEPSNLGQASRIPGV 611

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           + A +  L+++++ ++ + N +V
Sbjct: 612 SHADVTALMLWLELDSRRNNTLV 634


>gi|119467688|ref|XP_001257650.1| mitochondrial translation optimization protein (Mto1), putative
           [Neosartorya fischeri NRRL 181]
 gi|119405802|gb|EAW15753.1| mitochondrial translation optimization protein (Mto1), putative
           [Neosartorya fischeri NRRL 181]
          Length = 692

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/635 (44%), Positives = 391/635 (61%), Gaps = 23/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+++ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELVATEGLSIVEG 154

Query: 123 EVAGFNTEK----NI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K    NI      I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDLKTIDFPPLEIQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETVR--GPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG    +VVYPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVVYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +        +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPFTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + +RR + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDRRWRYFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            +   L++LL +  L+S   S      + D   R+A + L      I  L         +
Sbjct: 513 AQIKELQNLLANTKLSSTVWSRKGFKTRTDSSVRSALDLLCLDGVDIDALIPHIESPSGM 572

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F S++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDSIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + L  ++P ++  A +IEG+TPA    LL+++++ 
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRRT 667


>gi|29839891|ref|NP_828997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila caviae GPIC]
 gi|33301152|sp|Q824M2|MNMG_CHLCV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29834238|gb|AAP04875.1| glucose inhibited division protein A [Chlamydophila caviae GPIC]
          Length = 611

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/617 (44%), Positives = 379/617 (61%), Gaps = 20/617 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESTPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGITYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +   E+Q  D   + F    +       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVAEEQPGDPG-VGFVHRDEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG+ T
Sbjct: 246 THTTQKTKDIIAANISRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K + G
Sbjct: 306 QEVYVNGLSTSMPFDVQYNMIRSVHGLENAIITRPAYAIEYDYVHGNVIYPTLESKIVEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL+  G  LG +    Q+R+  +  +   +      L 
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLS---QERYEIFENQKQIIEDEKARLN 482

Query: 483 LTSKNLSSTSISF-KQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T K   ++ +S  K   +   +Y+ L  ++PD           D R   S +   L++E
Sbjct: 483 KTFKKYGNSVVSLAKALCRPEVSYDILRETFPD-----------DVRDLGSTLNASLEME 531

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I 
Sbjct: 532 IKYAGYIDRQKSLIHSLSKSENMVIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRIS 591

Query: 600 GMTPAALNLLLIYIKKN 616
           G+  A + +L++ +KK+
Sbjct: 592 GIACADIQVLMVAVKKH 608


>gi|21263694|sp|Q9K1G0|MNMG_NEIMB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|325199405|gb|ADY94860.1| glucose-inhibited division protein A [Neisseria meningitidis
           H44/76]
          Length = 628

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNADMHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 242 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 302 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 362 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK
Sbjct: 422 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLK 481

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 482 TTWYTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 542 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 602 ASRISGVTPAAVALLMVHLKR 622


>gi|159122420|gb|EDP47541.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus fumigatus A1163]
          Length = 693

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/634 (44%), Positives = 390/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKRYMQEELLATEGLSIVEG 154

Query: 123 EVAGFNTEK----NI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K    NI      I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDMKTIDFAPLEVQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETVR--GPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG    +V+YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVIYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDKRWRSFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            +   L++LL    L+S   S      + D   R+A + L      I  L         +
Sbjct: 513 AQIKELQNLLAKTKLSSTMWSRKGFKTRTDSSVRSALDLLCLDGVDIDTLIPHIESPSGM 572

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F  ++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDPIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL+++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRR 666


>gi|316985720|gb|EFV64666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis H44/76]
          Length = 648

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/621 (45%), Positives = 386/621 (62%), Gaps = 12/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 25  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 84

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 85  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 144

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 145 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 204

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
               +     GRLKTGTP R+DG+TI + +  +Q  D    P   M+ +    +  RQ+ 
Sbjct: 205 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVRGNADMHPRQVS 261

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 262 CWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 321

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 322 LTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 381

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG
Sbjct: 382 IAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKG 441

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK
Sbjct: 442 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLK 501

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIE 534
           +   T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE
Sbjct: 502 TTWYTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIE 561

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + Q
Sbjct: 562 QVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQ 621

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA+ LL++++K+
Sbjct: 622 ASRISGVTPAAVALLMVHLKR 642


>gi|237739895|ref|ZP_04570376.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 2_1_31]
 gi|229423503|gb|EEO38550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 2_1_31]
          Length = 633

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/630 (43%), Positives = 382/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLTVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D+ +++ FS  T   + ++ 
Sbjct: 182 EELPLSLEKVGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDKSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNDKVHEIIKNARERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + IR + G E   ++R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIRNVKGFENAKVMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEAIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ +G +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKLGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   NL       K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILTKTNVGPSNLRVNETLLKRGENPIKDGS--TLLELLRRPEVTFEDIVYISEEIKGVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY +L  +  E K+KL
Sbjct: 540 LKGYDHDTSYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDALKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|145218829|ref|YP_001129538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prosthecochloris vibrioformis DSM 265]
 gi|189039351|sp|A4SC27|MNMG_PROVI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145204993|gb|ABP36036.1| glucose inhibited division protein A [Chlorobium phaeovibrioides
           DSM 265]
          Length = 621

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/621 (44%), Positives = 388/621 (62%), Gaps = 12/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA+ G+S  LI+   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAALAAARSGSSCLLISSDLTAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN+ KGPA+  PR QADR  Y   M+R + ++ NLD++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRMLNLSKGPAMHSPRAQADRTAYTEYMKRVLEAETNLDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G          + +Q   ++R    +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GIEVRGGQFFGVELQSGRILRAGAAILTCGTFLNGLIHIGMNHFPGGRTIAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           S +   F T RLKTGTP R+D ++I +    +Q  DE   PFSF +  I  + QI C +T
Sbjct: 182 SLVAAGFTTARLKTGTPPRVDRRSIDYSIVIEQKGDENPPPFSFSSGSIAGKEQISCFLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S ++SG ++  GPRYCPSIEDKI RF ER+ H IFLEPEG +T+
Sbjct: 242 KTTHKTHEILRTGFDRSPLFSGKVQGVGPRYCPSIEDKIHRFTERDSHHIFLEPEGFHTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +++IPG+E+V +IRPGYAIEYDY +P ++  +LETK +  L
Sbjct: 302 EMYVNGFSTSLPEDIQIAGLQSIPGMEEVKMIRPGYAIEYDYFHPSQIRRSLETKAVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++RK  +L  I   R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASRKLKELPPIHLQRSDAYIGVLIDDLVTKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G   G + +   +       E   + + L+S  +
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLRKFGHTAGLVDDDTYRETLSKDDEIVRMTAFLRSKTI 481

Query: 484 TSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSS--LVIE 534
            +    NL     +    G  + A   L  P  ++  LF+  PD    AR  SS  LV E
Sbjct: 482 PTTALYNLLPAESNRPMTGGQKAA-SALKRPGITLNRLFAALPDFAKEARLISSNPLVHE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I  +Y  Y  R++++ +++   E  ++P+ F+Y S+  LS+E +EKL   +P  L Q
Sbjct: 541 QVEINLAYEGYLKRELLQTEKVARLESLILPETFNYHSVTGLSSEGREKLLHFRPETLGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++P+ +++L++ + +
Sbjct: 601 ASRIMGVSPSDISVLMVRLGR 621


>gi|297585587|ref|YP_003701367.1| glucose inhibited division protein A [Bacillus selenitireducens
           MLS10]
 gi|297144044|gb|ADI00802.1| glucose inhibited division protein A [Bacillus selenitireducens
           MLS10]
          Length = 628

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/619 (42%), Positives = 398/619 (64%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAG EA   +A++GA+T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   FDVIVVGAGHAGVEAGLASARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAVR  R QAD+ +Y+  M++ I   +NL + QG V 
Sbjct: 68  GGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFMYQHEMKKVIEDTDNLLLRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q  +     +V++TTGT+LRG + IG+L   +G     PS +L + 
Sbjct: 128 ELIVEDDQVKGVITQTGARYEADSVIITTGTYLRGKVIIGELSYESGPNNMQPSVNLSHH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  R KTGTP R++G +I + +TE Q  DE    FS+ T      Q+ C +T T
Sbjct: 188 MKELGFEMVRFKTGTPPRVNGHSIDYSQTEIQPGDEEPRAFSYETTAFITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH +I  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHELINANLHRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++QH+ ++T+PGLE V ++RPGYAIEYD I P +L+P+LETK+ISGLF 
Sbjct: 308 YVQGLSTSLPEDVQHEILKTVPGLESVRMMRPGYAIEYDAIVPTQLWPSLETKRISGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL+AGIN+A K  + + +   R+++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGLMAGINAALKVQEKEPLILDRSEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLR-SLLKS 480
           + TSRAE+R+ LR DNAD RLT  G ++G + + R    +++ A+  +E   LR +++K+
Sbjct: 428 LLTSRAEFRLLLRHDNADLRLTEKGYEIGLVNQNRFEGFEQKKAEIAKEIKRLRKAIIKA 487

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               ++ L     S  ++    +A   +  P+ S   + ++ P     +  V E+++I+ 
Sbjct: 488 TPENNQVLEDLGASPLKEAM--SADVLIKRPELSYSLVDALVPAETVLTDDVKEQVEIQI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +     E R IP+D DY S+  L+ E ++KL+ ++P ++ QAS++ G
Sbjct: 546 KYEGYIAKQLEQVERSLKMENRKIPEDIDYLSINGLAIEARQKLNEVRPISVGQASRVSG 605

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + P+ +++LL+Y+++  ++
Sbjct: 606 VNPSDISVLLVYLEQGRLQ 624


>gi|294784742|ref|ZP_06750030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
 gi|294486456|gb|EFG33818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
          Length = 633

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/630 (43%), Positives = 381/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG +T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYDTNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGENPIKDGS--TLLELLRRPEVTFEDIKYISEEIKGLD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQDYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|310830136|ref|YP_003962493.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium limosum KIST612]
 gi|308741870|gb|ADO39530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium limosum KIST612]
          Length = 633

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/617 (45%), Positives = 402/617 (65%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIG GHAG EAA  AA+LG  T L+T    ++  M CNP+IGG GKGHLVREIDA
Sbjct: 7   SFDVVVIGAGHAGAEAALAAARLGFETLLLTINLDSVAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV   R QAD++ Y+  M+  I +QE+L + Q E 
Sbjct: 67  LGGEMGKNIDATMIQCRMLNTGKGPAVHSLRAQADKKAYQFRMKEVIENQEHLLLKQQEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ + +Q  ++ +C + V+ TGT+L+G I IG+++   G  G  P+  L +
Sbjct: 127 TRIIVEDGRITGVEVQTGAVYQCKSCVICTGTYLKGKIFIGEVQYDGGPNGLFPAMQLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++   +  R KTGTPAR+D KT+ + K + Q  DE+++PFSF T+KI   Q+ C +T 
Sbjct: 187 SLLEQGIELQRFKTGTPARVDAKTVDYSKMQVQNGDEKIVPFSFETEKIEIDQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETHRII EN++ S +Y+GD+   GPRYCPSIE K++RF ++  HQIF+EPEGL+T+ 
Sbjct: 247 TNEETHRIINENMERSPLYTGDVVGVGPRYCPSIETKVMRFADKPQHQIFMEPEGLHTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+S+ LPE++Q    RT+PG+EKV  +R  YAIEYD I P  L  +LE+K I GLF
Sbjct: 307 VYVQGMSSCLPEDVQIALYRTVPGMEKVEFMRSAYAIEYDCIYPTRLKASLESKDIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQINGT+GYEEAAAQGL+AG+N+ R     + +   R+ +YIGV+IDD+ +KG  EPY
Sbjct: 367 FGGQINGTSGYEEAAAQGLIAGVNAVRCIEGKEPVILDRSQAYIGVLIDDIITKGTEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFAKYIQEYNFLRSLLK 479
           RM TSR+EYR+ LR DNAD RLTPIG ++G I + R      K+ A   ++    R ++K
Sbjct: 427 RMMTSRSEYRLLLRQDNADLRLTPIGHEIGLISDERYTAFLHKKAAVEQEKERLTRLMIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T+K L     S  + G T    E +  P+    N  ++ P+    S  V E+++++
Sbjct: 487 PGEHTNKVLEGIGSSPIKSGVTLA--ELIRRPEVGYANTAALDPERPVLSDAVCEQVEVQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ + ++ K  EK+LIP++ DY+++  L  E  EKL+ ++P ++ QAS+I 
Sbjct: 545 IKYDGYIKKQVAQVEQFKKMEKKLIPENIDYTAIGGLRLEAVEKLTDIQPKSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKN 616
           G++PA L++LLIY+++N
Sbjct: 605 GVSPADLSVLLIYLEQN 621


>gi|71020637|ref|XP_760549.1| hypothetical protein UM04402.1 [Ustilago maydis 521]
 gi|46100437|gb|EAK85670.1| hypothetical protein UM04402.1 [Ustilago maydis 521]
          Length = 710

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/652 (42%), Positives = 378/652 (57%), Gaps = 47/652 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+++G GHAGCEAAA +A+ GA T L+T    +IG +SCNP++GG+GKG LVRE+DAL
Sbjct: 46  FDVVIVGAGHAGCEAAAGSARTGARTLLVTTNKHSIGELSCNPSLGGVGKGTLVREVDAL 105

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL G + D AGIQFR+LN  KGPAV GPR Q DR LYR  MQ  +    NL + + +V 
Sbjct: 106 GGLCGIIGDRAGIQFRMLNKSKGPAVHGPRAQIDRSLYRQHMQEALRQYPNLTISEAKVH 165

Query: 126 GFNTE------------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           G   +                  K ++  IV  +   I CS V+L TGTFL   IH+G  
Sbjct: 166 GLQLDWSNRASSHHGNQGEGEKAKAVVRGIVTTNGDSISCSQVILATGTFLSADIHLGLE 225

Query: 168 KIPAGRM-------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI----IWD---- 212
              AGRM        D  S+ L  S  +  F  GRLKTGTPAR+   ++     W     
Sbjct: 226 SRSAGRMLPLPSINDDPASDGLSQSLARAGFKLGRLKTGTPARIAASSVRLGSPWQIGSK 285

Query: 213 ---KTEKQFADERLIPFSFMTDK---ITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
              + E    D     FSF+ D       RQ+EC  T T   TH I+ +N+  S      
Sbjct: 286 VDPRLEVIHGDAAPAAFSFLHDAPDIAPARQVECWGTHTTPLTHEIVRQNLDKSIHIKET 345

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL----NTDVVYPNGISTALPEEIQHQF 322
           ++  GPRYCPSIE K++RF E+  H ++LEPEGL    +  V+YPNG+S  LP E Q + 
Sbjct: 346 VR--GPRYCPSIESKVIRFKEKQAHPVWLEPEGLPGTNDGSVLYPNGLSCTLPSEQQVEL 403

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +R+IPGLE   +IR GY +EYD+++P+EL  +LETK+I GL+LAGQINGTTGYEEAAAQG
Sbjct: 404 LRSIPGLECAEMIRAGYGVEYDHVDPRELRHSLETKRIEGLWLAGQINGTTGYEEAAAQG 463

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
            VAG+N+  K N LD +   R+  YIG MIDDL  +GV EPYRMF+SR+EYR++LR DNA
Sbjct: 464 CVAGLNAGLKVNGLDPLSIGRSGGYIGTMIDDLVMQGVEEPYRMFSSRSEYRMTLRADNA 523

Query: 443 DNRLTPI--GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK 500
           D RLTP+        +GE+R +RF     + +   +LLK+  ++             D  
Sbjct: 524 DKRLTPLLRAAYSAAVGEQRWQRFCATQADMDQALALLKANRMSPHGWMKHGFHCSGDSH 583

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            R+  + L  P   I++L  + P      ++V++R++IE+ Y  +  RQ  E +    E 
Sbjct: 584 ERSGLDMLKQPRLGIRDLIPVIPALANLGTMVMDRVEIEAKYMPHLERQAQEIEAFNKET 643

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
           +   P+ F++ S+P L+++L+EKL +L+P +L     I G TP+    L  Y
Sbjct: 644 QLRFPEGFNFGSVPGLNSQLREKLELLRPTSLAALKSIPGCTPSNYATLWRY 695


>gi|284007082|emb|CBA72357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Arsenophonus
           nasoniae]
          Length = 607

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/603 (45%), Positives = 379/603 (62%), Gaps = 13/603 (2%)

Query: 23  VAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV 82
            AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL G+M    D AGIQFR 
Sbjct: 2   AAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGIMAIATDKAGIQFRT 61

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
           LN  KGPAV+  R Q DR LY+ A++  + +Q NL + Q  V     E + I  ++ +  
Sbjct: 62  LNASKGPAVQATRAQTDRVLYKQAIRTALENQNNLMIFQQAVEDLIVENDQIIGVITKMG 121

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
                 +VVLT GTFL G IHIG      GR GD P+  L +   +      RLKTGTP 
Sbjct: 122 LKFHTKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIGLSHRLRELPLRVDRLKTGTPP 181

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSA 261
           R+D +TI + +   QF D+    FSF+ + +   +Q+ C IT TN +TH++I +N+  S 
Sbjct: 182 RIDARTIDFSQLVPQFGDDPTPIFSFIGSAEQHPKQLPCYITYTNEKTHQVIRDNLDRSP 241

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++ +YPNGIST+LP ++Q Q
Sbjct: 242 MYAGIIEGIGPRYCPSIEDKVMRFADRSAHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQ 301

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            I ++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEA AQ
Sbjct: 302 IIHSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKFIKGLFFAGQINGTTGYEEAGAQ 361

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           GL+AG+N+AR + + +     R  +YIGV++DDL + G  EPYRMFTSRAEYR+ LR DN
Sbjct: 362 GLLAGLNAARYAFEQEGWFPRRDQAYIGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDN 421

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN--------LSSTSI 493
           AD RLT  G +LG I E R ++F + ++     R  L++L L   +        + +  +
Sbjct: 422 ADLRLTEKGYELGLIDENRWQKFCRKVELIEQERQRLRNLWLHPNSDKINDLNQVLAVPL 481

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEA 553
           S + +G+       +SY   +    FS   D  +    V  +++I+  Y  Y  RQ  E 
Sbjct: 482 SKESNGEDLLRRPEMSYKLLTSLKYFSPAIDDPQ----VTNQVEIQVKYEGYIIRQQEEI 537

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +     E   +P + DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++
Sbjct: 538 ERQLRNENTTLPTNLDYKQITGLSNEVIAKLNDHKPSSIGQASRISGITPAAISILLVWL 597

Query: 614 KKN 616
           KK 
Sbjct: 598 KKQ 600


>gi|70984234|ref|XP_747634.1| mitochondrial translation optimization protein (Mto1) [Aspergillus
           fumigatus Af293]
 gi|66845261|gb|EAL85596.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus fumigatus Af293]
          Length = 693

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/634 (44%), Positives = 390/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKRYMQEELLATEGLSIVEG 154

Query: 123 EVAGFNTEK----NI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K    NI      I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDMKTIDFAPLEVQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETVR--GPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG    +V+YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVIYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDKRWRSFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            +   L++LL    L+S   S      + D   R+A + L      I  L         +
Sbjct: 513 AQIKELQNLLAKTKLSSTMWSRKGFKTRTDSSVRSALDLLCLDGVDIDALIPHIESPSGM 572

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F  ++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDPIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL+++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRR 666


>gi|124026850|ref|YP_001015965.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. NATL1A]
 gi|166222716|sp|A2C5E1|MNMG_PROM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123961918|gb|ABM76701.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           NATL1A]
          Length = 656

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/639 (43%), Positives = 383/639 (59%), Gaps = 24/639 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVVGGGHAGCEAALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   +Q RVLN  +GPAVR  R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGIIGKLADLTALQKRVLNASRGPAVRALRAQTDKRSYAHEMLKILQNTPNLKIREA 127

Query: 123 EVAGFNTEK----------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   E                   I  I     S+     VVLTTGTFL G I IG 
Sbjct: 128 MVTGLEIEHYPNQIDQKTPEIQERIGFIKGIKTYFGSVFHAKAVVLTTGTFLGGRIWIGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLI 224
             + AGR G+  S  L     K  F T RLKTGTPAR+D +TI  D  ++Q +D  ++  
Sbjct: 188 QSMSAGRAGEQASEGLTEELKKLGFTTDRLKTGTPARVDRRTIDLDSLDEQLSDASDKFF 247

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
            F  ++ K +  Q+ C ITRT  ETH++I  N+  + IY G I S GPRYCPSIEDKIVR
Sbjct: 248 SFDPLSWK-SGEQMSCHITRTTKETHQLIKNNLHLTPIYGGFIDSKGPRYCPSIEDKIVR 306

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +++ HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGL+   ++RP YA+EYD
Sbjct: 307 FADKDSHQIFLEPEGRDTPEMYVQGFSTGLPENLQLELLRTLPGLQNCVMLRPAYAVEYD 366

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           YI   +L  TLETK+ISGL+ AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  + I F R 
Sbjct: 367 YIPATQLEATLETKRISGLYSAGQLNGTTGYEEAAAQGLVAGLNAARLVNNKEGIIFERE 426

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIG MIDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I ERR   F
Sbjct: 427 SSYIGTMIDDLVTKDLKEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDERRWNIF 486

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFS 520
               Q  N  +  L    +   +  +  I F   G     + T   FL   +   ++L +
Sbjct: 487 NAKQQLINQEKERLDKERIKESDKCAKEI-FSSTGTPIKGSLTLANFLRRTNIHYKDLIT 545

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                +     V E ++I+  Y+ Y  RQ  +  ++K + K+L+PK+ +Y+++  LS E 
Sbjct: 546 YNLTTQSIPLDVEEAVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEA 605

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +EKL+I +P +L  A+++ G++ A L  LL+++K   +K
Sbjct: 606 REKLTISQPKSLGHAAQVPGVSKADLTALLVWLKIEKMK 644


>gi|195585718|ref|XP_002082627.1| GD11675 [Drosophila simulans]
 gi|194194636|gb|EDX08212.1| GD11675 [Drosophila simulans]
          Length = 661

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/636 (44%), Positives = 414/636 (65%), Gaps = 31/636 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                   +T+      +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCCGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKASVDFSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++++VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSNLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+  +D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTKHIDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQE 470
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F    A+    
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQQTEARLQSA 507

Query: 471 YNFLRSLLKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDAR 526
            + LR L K      +  NL     S +     +TA++ L  P  + +I+ L  + P+  
Sbjct: 508 TDSLRRLRKHTHYWRQALNLPKAKASVE-----KTAFDMLGIPADNITIEKLIQLHPNEL 562

Query: 527 KF---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKE 582
            +      + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++
Sbjct: 563 SWLKGDRNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQ 622

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           KL++++P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 623 KLTLIQPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|269118889|ref|YP_003307066.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
 gi|268612767|gb|ACZ07135.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
          Length = 628

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/626 (43%), Positives = 390/626 (62%), Gaps = 18/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAGCEAA  +A+LG  TA+ T     IG MSCNP++GG  K HLV+EID
Sbjct: 2   RDYDVIVVGAGHAGCEAALASARLGMKTAIFTITLDNIGMMSCNPSLGGPAKSHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + IQ R+LN KKGPAVR  R QADR++Y   M++ + +QENLD+IQ  
Sbjct: 62  ALGGEMACNMDKSFIQMRILNTKKGPAVRSLRAQADRKVYSREMKKTVENQENLDIIQDI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE   ++ I  +         V+L TGTFL+G++HIG  KI  GRMG+  S  L 
Sbjct: 122 VTELKTENGKVTGISTKTGLEFTAKVVILATGTFLKGLMHIGDRKIKGGRMGELSSEELS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITNRQIE 239
           +S  K     GR KTGTP R+D +TI  D  E+Q  + E+L+ FS  T   D    +Q+ 
Sbjct: 182 DSLAKEGLKIGRFKTGTPPRVDIRTINLDILEEQPGETEKLLKFSARTKDEDIKGRKQLS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT    H II+ N+  + +Y+G I S GPRYCPSIEDK+V+F E++ H +FLEPEG
Sbjct: 242 CYLTRTTPNIHSIILSNLDKAPMYNGSIDSTGPRYCPSIEDKVVKFSEKDSHHLFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  VY +G+ST+ P EIQ + +  + GLE  +I+R GYA+EYDY++P  L  TLE++ 
Sbjct: 302 FDTSEVYISGLSTSFPAEIQQKIVNNVIGLENAHIMRYGYAVEYDYVDPSGLKYTLESRA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+LAGQINGT+GYEEAAAQGLVAG+N+ +K    + +   R DSYIG MIDDL +K 
Sbjct: 362 VENLYLAGQINGTSGYEEAAAQGLVAGVNAVQKLKNKEPLILDRADSYIGTMIDDLINKE 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           ++EPYRMFT+R+EYR+ LR DNAD RL   G K+G + E   K+     +    +  +L+
Sbjct: 422 IMEPYRMFTARSEYRLILREDNADLRLAETGYKIGLVSEEEYKKTVHKRESVKKIIEILE 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEF--------LSYPDFS-IQNLFSICPDARKFSS 530
           +  L + N     I  K     ++            ++Y D   I  + +  PD   +  
Sbjct: 482 NTKLGTSNGRLVEILDKYGDSLKSGTTLKETLRRPKVTYDDIKYIAGIMNDVPDL-SYDE 540

Query: 531 LVIERLQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            +  + +++  Y  Y  +  Q+IE ++ + EEK +IP++FDY+ +  ++ E K++L   +
Sbjct: 541 DIEYQTEVQVKYEGYIQKSYQIIE-RQKRLEEK-MIPENFDYNRMLGITREAKQRLGEKR 598

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P N+ QAS+I G+TPA +++LL+Y++
Sbjct: 599 PHNIGQASRIVGVTPADVSVLLMYLE 624


>gi|291529194|emb|CBK94780.1| glucose-inhibited division protein A [Eubacterium rectale M104/1]
          Length = 646

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/631 (42%), Positives = 385/631 (61%), Gaps = 26/631 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVR
Sbjct: 5   FVEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + 
Sbjct: 65  EIDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIR 124

Query: 121 QGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           QGEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +
Sbjct: 125 QGEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L  S +    +  R KTGTPAR+D +++ + K E+QF DER++PFSF TD   +   Q
Sbjct: 185 NHLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDERVVPFSFTTDPESVQIDQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EP
Sbjct: 245 VSCWLTYTNNKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE 
Sbjct: 305 EGLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEF 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 365 KKIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R          Y+++   
Sbjct: 425 KKNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKER----------YDYVCKK 474

Query: 478 LKSLVLTSKNLSSTSISFKQD-------------GKTRTAYEFLSYPDFSIQNLFSICPD 524
            + +    + +S  +I  + D                 T  E +  P+     L  I PD
Sbjct: 475 KELIDKEIERVSHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPD 534

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
             K S  + E++ I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL
Sbjct: 535 RPKLSDDIREQINILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKL 594

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  +P ++ QAS+I G+TPA +++LL+++++
Sbjct: 595 NEFQPLSIGQASRISGVTPADISVLLVFLEQ 625


>gi|226294752|gb|EEH50172.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 695

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/630 (44%), Positives = 389/630 (61%), Gaps = 21/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDAL
Sbjct: 38  YDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREIDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+V 
Sbjct: 98  DGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGKVG 157

Query: 126 GFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                +  +++        + ++   +I    VV+TTGTFL G IHIG    P+GRMG++
Sbjct: 158 DIILSREGLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMGEA 217

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
            +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++    
Sbjct: 218 ATFGLSKSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAVND 277

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H ++
Sbjct: 278 EDQLPCWSTYTNEVSHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHIVW 335

Query: 295 LEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           LEPEG    +V+YPNGIS  +P + Q   +RTIPGLE  ++++ GY +EYDY++P+ L P
Sbjct: 336 LEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAHMLQAGYGVEYDYVDPRSLRP 395

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+D
Sbjct: 396 TLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFILSRSDGFIGIMVD 455

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   +   
Sbjct: 456 DLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQITE 515

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR------- 526
           LR+LL++    S   S        D   R+A++ L   D SI ++               
Sbjct: 516 LRTLLENTKFPSALWSRKGFGVHGDNNLRSAFDLLRLNDTSIDDIIPHIESGSGRTYTPL 575

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L  
Sbjct: 576 SFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDESLLLPPDMDYGQVVGLSYEERAALER 635

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++P N+  A +IEGMTP A   LL+++++N
Sbjct: 636 VRPENIGMARRIEGMTPVAALRLLVHVRRN 665


>gi|304439122|ref|ZP_07399041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372481|gb|EFM26068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 633

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/633 (43%), Positives = 399/633 (63%), Gaps = 19/633 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+G GHAG E+A  AA++G  T L+T    +I +MSCNP +GG GKGHLVRE
Sbjct: 8   IGGEYDVIVVGAGHAGTESALAAARMGRKTLLLTMNLDSIVAMSCNPNVGGTGKGHLVRE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D   IQ R+LN+ KGPAV   R QAD+  Y   M++ I   ENLD+ Q
Sbjct: 68  IDALGGEMARNIDRTFIQSRMLNLSKGPAVHSLRAQADKRRYHDEMKKVIEKTENLDLRQ 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +  ++ +  ++ +  +VV+ TGT+LRG I +G++   +G  G  PS  
Sbjct: 128 SEVVKILLEDSKVVGVLTKTGAIYKAKSVVVATGTYLRGRIFMGEVNYSSGPDGMKPSLD 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIE 239
           L  S      +  R+KTGTPAR+   TI + K E Q  DER++PFSF  +   ++  Q+ 
Sbjct: 188 LSESLKDMGLELIRMKTGTPARMLRSTIDFSKMEVQPGDERVVPFSFDNIDKDMSKDQVN 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  + H II ENI  SA+Y GDI+  GPRYCPSIEDK++RF +R  HQ+F+EPEG
Sbjct: 248 CYLTYTTEKCHDIIRENIMRSAMYLGDIEGTGPRYCPSIEDKVMRFKDRTSHQVFIEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y  G+S++LPEE+Q    + I GLE   I+R  YAIEYD I+   +  +LE   
Sbjct: 308 LSTEEMYIQGVSSSLPEEVQIDIYKNIIGLENAKIMRSAYAIEYDAIDATVIDRSLEHMD 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQING++GYEEAAAQGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG
Sbjct: 368 ISGLFFAGQINGSSGYEEAAAQGLMAGINAALKVEGKEPLILERSDAYIGVLIDDLVTKG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL-- 477
             EPYRM T+RAEYR++LR DNAD RLT +G  +G + + + +R+  Y +E N  + L  
Sbjct: 428 TREPYRMMTARAEYRLTLRQDNADMRLTQMGYDIGLVTKEKYERYL-YRKE-NIEKELKR 485

Query: 478 LKSLVL--TSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           +K + +  T++N      L +T I       T++  E +  P+     +  + P   +  
Sbjct: 486 IKKIKINPTAENNEILERLGTTPIK-----NTQSLEELIRRPELGYDAVKELDPQRPELR 540

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +IE+++IE  Y+ Y  +Q I+  + K  EKR + KD +Y  +  L NE +EKL+ ++P
Sbjct: 541 RDIIEQVEIEIKYSGYIKKQNIQISQFKKLEKRYLEKDLNYEEVQGLRNEAREKLTKIRP 600

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            ++ QA++I G++PA +N+LLIY+++   + N+
Sbjct: 601 ESIGQAARITGVSPADINVLLIYLERKRREKND 633


>gi|293398147|ref|ZP_06642352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae F62]
 gi|291611410|gb|EFF40480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae F62]
          Length = 655

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/618 (45%), Positives = 385/618 (62%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP++GG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSVGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +   S+ VIE+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TP A+ LL++++K+
Sbjct: 632 ISGVTPTAVALLMVHLKR 649


>gi|73543039|ref|YP_297559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia eutropha JMP134]
 gi|123623784|sp|Q46VW9|MNMG_RALEJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72120452|gb|AAZ62715.1| Glucose-inhibited division protein A subfamily [Ralstonia eutropha
           JMP134]
          Length = 646

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/627 (45%), Positives = 387/627 (61%), Gaps = 15/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   KEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  S SL 
Sbjct: 125 VDDLLVEGDRVVGAVTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPASVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
               +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + +Q+ C 
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I+ TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL 
Sbjct: 245 ISHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K IS
Sbjct: 305 TNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRALKASLESKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     LKS 
Sbjct: 425 EPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDVRWDAFNRKRDAVSRETERLKST 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVI 533
            +    L    +  +  K   +  +  + L  P+    +L ++      P+       ++
Sbjct: 485 WVNPTILPAEDAVPLLGKPIEREYSLADLLRRPEVVYNDLMALQGGRHAPEVPLDGDPLL 544

Query: 534 -----ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
                E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+  +
Sbjct: 545 MDQIREQIEIGVKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLNQHR 604

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G+TPAA++LLL+++KK
Sbjct: 605 PETLGQASRISGVTPAAISLLLVHLKK 631


>gi|223936053|ref|ZP_03627967.1| glucose-inhibited division protein A [bacterium Ellin514]
 gi|223895275|gb|EEF61722.1| glucose-inhibited division protein A [bacterium Ellin514]
          Length = 651

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/641 (43%), Positives = 386/641 (60%), Gaps = 49/641 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAG EAA  AA++G  T L+T    TIG MSCNPAIGGL KGHL REID
Sbjct: 6   KKYDVIVVGAGHAGVEAALAAARMGCQTLLLTINADTIGQMSCNPAIGGLAKGHLTREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D  G+QFR+LN KKGPAV  PR Q D++ Y+  ++     + NLDV QG+
Sbjct: 66  ALGGEMGKATDMTGLQFRMLNTKKGPAVWAPRAQCDKKAYQFRLKWVCEREPNLDVKQGQ 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 +   ++ +          +TVV+TTGTFLRG++HIG+ +   GR G+S + +L 
Sbjct: 126 TIKLVHQNGQVTGVETSLEVQYLSATVVITTGTFLRGLMHIGQNQQSGGRAGESAAMNLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---------- 233
            S  +   + GRLKTGTP RL  ++I + KT +Q  DE +  F++  D +          
Sbjct: 186 ASLKEVGLELGRLKTGTPPRLLRRSIDFTKTAEQSGDEPIPFFTYWKDDLFHVEHSGVNP 245

Query: 234 ------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                              N Q+ C IT T   T +II ENI  S +YSG I+  GPRYC
Sbjct: 246 RDIGHSAGKYPPGSILDRLNGQLHCYITYTTDATAKIIRENIHKSPMYSGVIEGVGPRYC 305

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIV+F E+   QIFLEPEG+ TD +Y NG ST LP E+Q Q ++TI G E   I+
Sbjct: 306 PSIEDKIVKFPEKERQQIFLEPEGIATDEIYVNGFSTCLPYEVQVQMVQTIIGCENAEIL 365

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RP YA+EYD+  P +L+P+LETK  S LFLAGQINGT+GYEEA AQGL+AGIN+ARK   
Sbjct: 366 RPAYAVEYDFAFPTQLYPSLETKVCSHLFLAGQINGTSGYEEAGAQGLMAGINAARKVQG 425

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            + I   R  +YIGV+IDDL +KG +EPYRMFTSRAEYR+ LR DNAD RL+  G ++G 
Sbjct: 426 KEPIILRRDQAYIGVLIDDLVTKGTIEPYRMFTSRAEYRLILRQDNADLRLSETGHQIGL 485

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI 515
           + ER    + K+  +   + + +  L  T +              T    + L  P  + 
Sbjct: 486 LPER---NYIKFKAKREAIAAEIDRLEKTRQG-------------TDLLAQLLRRPQVTY 529

Query: 516 QNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           Q+L    P  R   S  VI++++I   Y  Y  RQ +E ++ K  E + IP  FDY ++ 
Sbjct: 530 QDL----PGKRTDLSEDVIQQVEIAIKYEGYIDRQELEVEKFKTLEDKQIPTAFDYDTVH 585

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +L  E ++KL  ++P  L QAS+I G++P+ + +L++++K+
Sbjct: 586 SLRTEARQKLKKIRPATLGQASRISGVSPSDIGILMVWLKR 626


>gi|317496584|ref|ZP_07954932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella moribillum M424]
 gi|316913291|gb|EFV34789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella moribillum M424]
          Length = 627

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/615 (43%), Positives = 376/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  A++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHAASRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+  M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVAYQTEMKRILEGTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +   +++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIENNKVVGLKTMLGTAYKAKVIIITTGTYLRGEIVIGDVKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + +T  Q  D     FS+ T +    QI C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSQTAIQPGDNEKYAFSYETTEYVEDQIPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNTTTHEIIDRNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++QH  +R+I GLE   IIR GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYIQGLSTSLPDDVQHDMVRSIAGLENAVIIRNGYAIEYDAVNPMTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKILGEEPMTLGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT      G + E R ++F++  Q        LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTEERYRKFSEKRQAVADEIERLKTFRI 485

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    +   +      + R    A + L  P+ S +N+  +  D+      ++E+++IE 
Sbjct: 486 TPTANTLEKLVELNSAEIRDGILAIDMLRRPELSHKNVMYLADDSTILPKDIVEQVEIEV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K      IP D DY  +P+L+ E +EKL  + P  + QAS+I G
Sbjct: 546 KYEGYIKKSLQQVEKLKKMNAMKIPSDLDYDEVPSLAIEAREKLKKVLPLTIGQASRISG 605

Query: 601 MTPAALNLLLIYIKK 615
           + PA +++LL+++++
Sbjct: 606 VNPADISILLVFLEQ 620


>gi|261824838|pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
           Mnmg
 gi|261824839|pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
           Mnmg
          Length = 576

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/542 (48%), Positives = 353/542 (65%), Gaps = 5/542 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 33  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 92

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 93  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 152

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 153 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 212

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q+ C IT 
Sbjct: 213 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 272

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 273 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 332

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 333 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 392

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 393 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 452

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 453 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 512

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A   +     E+++I+ 
Sbjct: 513 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 572

Query: 541 SY 542
            Y
Sbjct: 573 KY 574


>gi|90961108|ref|YP_535024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius UCC118]
 gi|227892407|ref|ZP_04010212.1| glucose-inhibited division protein A [Lactobacillus salivarius ATCC
           11741]
 gi|122449445|sp|Q1WVH6|MNMG_LACS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|90820302|gb|ABD98941.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Lactobacillus salivarius UCC118]
 gi|227865814|gb|EEJ73235.1| glucose-inhibited division protein A [Lactobacillus salivarius ATCC
           11741]
 gi|300214039|gb|ADJ78455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Lactobacillus
           salivarius CECT 5713]
          Length = 637

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/624 (43%), Positives = 381/624 (61%), Gaps = 10/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP+IGG  KG +VREID
Sbjct: 10  KDYDVIVVGAGHAGCEAALASARMGNETLLITINLEMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y + M+  I    +L + QG 
Sbjct: 70  AMGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTIEQTPHLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +V    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIIEDGEVKGVVTNTGACYGAKSVVLTTGTAARGKIIIGELMYSSGPNNTQPALELS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-----KITNRQI 238
            +  K  F+  R KTGTP R+DG TI +DKTE+Q  D     FS+ +      K+ + Q+
Sbjct: 190 KNLAKLGFELKRFKTGTPPRVDGNTIDYDKTEEQPGDVEPNHFSYESKDEDYLKVKD-QL 248

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPE
Sbjct: 249 SCWLTYTNEYTHKIIQDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFSDKPRHQLFLEPE 308

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NTD  Y  G+ST+LPEE+Q + +R+I GLE   ++RPGYAIEYD ++P +L PTLETK
Sbjct: 309 GRNTDEYYVQGLSTSLPEEVQQEMVRSIDGLEHAEMMRPGYAIEYDVVSPYQLRPTLETK 368

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GL+ AGQ NGT+GYEEAA QG +AG+N+ R++  L+ I   R+D+YIGVMIDDL +K
Sbjct: 369 LIKGLYTAGQTNGTSGYEEAAGQGFIAGVNAGRRAKGLEEITLKRSDAYIGVMIDDLVTK 428

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R   F +   +    +  L
Sbjct: 429 GTNEPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYAAFEEKKAQIEAEKQRL 488

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICP-DARKFSSLVIE 534
             + +      +  +    D + +    A EFL  P  + Q+L    P  A      VIE
Sbjct: 489 SKIRIKPNAEVNAFVEAHGDRELKDGVLATEFLRRPYVTYQDLLKFIPAPAEPLDRRVIE 548

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  ++  + +++K  E + IP   DYS +  ++ E ++KL+ ++P  L Q
Sbjct: 549 QIEIQFKYEGYIKKEYAKVEKLKRMEAKKIPARIDYSRIEGIATEAQQKLAKIQPETLAQ 608

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A +I G+ PA L++L +YI++  +
Sbjct: 609 AGRISGVNPADLSILAVYIEQGKI 632


>gi|301299780|ref|ZP_07206022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852593|gb|EFK80235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 637

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/624 (43%), Positives = 381/624 (61%), Gaps = 10/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP+IGG  KG +VREID
Sbjct: 10  KDYDVIVVGAGHAGCEAALASARMGNETLLITINLEMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y + M+  I    +L + QG 
Sbjct: 70  AMGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTIEQTPHLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +V    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIIEDGEVKGVVTNTGACYGAKSVVLTTGTAARGKIIIGELMYSSGPNNTQPALELS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-----KITNRQI 238
            +  K  F+  R KTGTP R+DG TI +DKTE+Q  D     FS+ +      K+ + Q+
Sbjct: 190 KNLAKLGFELKRFKTGTPPRVDGNTIDYDKTEEQPGDVEPNHFSYESKDEDYLKVKD-QL 248

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPE
Sbjct: 249 SCWLTYTNEYTHKIIQDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFSDKPRHQLFLEPE 308

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NTD  Y  G+ST+LPEE+Q + +R+I GLE   ++RPGYAIEYD ++P +L PTLETK
Sbjct: 309 GRNTDEYYVQGLSTSLPEEVQQEMVRSIDGLEHAEMMRPGYAIEYDVVSPYQLRPTLETK 368

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GL+ AGQ NGT+GYEEAA QG +AG+N+ R++  L+ I   R+D+YIGVMIDDL +K
Sbjct: 369 LIKGLYTAGQTNGTSGYEEAAGQGFIAGVNAGRRAKGLEEITLKRSDAYIGVMIDDLVTK 428

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R   F +   +    +  L
Sbjct: 429 GTNEPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYAAFEEKKAQIEAEKQRL 488

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICP-DARKFSSLVIE 534
             + +      +  +    D + +    A EFL  P  + Q+L    P  A      VIE
Sbjct: 489 SKIRIKPNAEVNAFVETHGDRELKDGVLATEFLRRPYVTYQDLLKFIPAPAEPLDRRVIE 548

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  ++  + +++K  E + IP   DYS +  ++ E ++KL+ ++P  L Q
Sbjct: 549 QIEIQFKYEGYIKKEYAKVEKLKRMEAKKIPARIDYSRIEGIATEAQQKLAKIQPETLAQ 608

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A +I G+ PA L++L +YI++  +
Sbjct: 609 AGRISGVNPADLSILAVYIEQGKI 632


>gi|94312437|ref|YP_585647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cupriavidus metallidurans CH34]
 gi|166222725|sp|Q1LHJ8|MNMG_RALME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|93356289|gb|ABF10378.1| glucose-inhibited cell-division protein [Cupriavidus metallidurans
           CH34]
          Length = 654

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/627 (45%), Positives = 385/627 (61%), Gaps = 15/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   KEFDVIVVGGGHAGTEAALAAARMGCQTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +     Q     R   VVLT GTFL G IH+G      GR GD  + SL 
Sbjct: 125 VDDLMVEGDRVVGARTQVGIDFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
               +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + +Q+ C 
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL 
Sbjct: 245 ITHTNSRTHDVIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K I 
Sbjct: 305 TNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRGLKSSLESKAIE 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT IG +LG + + R   F +     +     LKS 
Sbjct: 425 EPYRMFTSRAEFRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLKST 484

Query: 482 VLTSKNL-SSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSI----------CPDARKF 528
            +    L  + ++     G  R  +  + L  P+   + L ++            D    
Sbjct: 485 WVNPTLLPEADAVPLLGKGIEREYSLADLLRRPEVRYEALVALQDGRFAPETPLADDTML 544

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +  + E+++I   Y  Y  RQ  E  +++  E   +P +FDY+ +  L  E+ +KL+  +
Sbjct: 545 AEQIREQIEIGIKYHGYIARQAAEVDKLEANESTKLPPNFDYTEVRGLGFEVSQKLNQHR 604

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G+TPAA++LLL+++KK
Sbjct: 605 PETLGQASRISGVTPAAISLLLVHLKK 631


>gi|75075770|sp|Q4R4P6|MTO1_MACFA RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|67971174|dbj|BAE01929.1| unnamed protein product [Macaca fascicularis]
          Length = 692

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 287/630 (45%), Positives = 406/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSVPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++ N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTYTNPRVDEIVLNNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPTELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADIRLTLRGYKDAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S   KNL    SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFSSSKWKNLIPEVSISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDIDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|17149039|gb|AAL35894.1| MTO1-like protein [Homo sapiens]
          Length = 692

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/630 (45%), Positives = 405/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+   S    K +   SIS  +    R A + L Y +  + +     P+  +K+
Sbjct: 514 GISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSCTKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|118443722|ref|YP_876980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium novyi NT]
 gi|166222928|sp|A0PX78|MNMG_CLONN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118134178|gb|ABK61222.1| glucose-inhibited division protein A [Clostridium novyi NT]
          Length = 632

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/618 (43%), Positives = 386/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV VIG GHAGCEAA  +A+LG ST +     +++  M CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVAVIGAGHAGCEAALASARLGVSTVVFATDLASVAMMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + +NL + Q E+ 
Sbjct: 68  GGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKRKYAERMKHVLETTDNLHLKQAEII 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E + +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  S
Sbjct: 128 KVDIEDSKVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R KTGTPAR++ +T+ + K  +Q  DE ++PFSFM++ I   QI C +T +
Sbjct: 188 LIESGIKITRFKTGTPARINRRTVDFSKMIEQKGDENIVPFSFMSENIEREQISCYLTYS 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ +
Sbjct: 248 GDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K I GLF 
Sbjct: 308 YVGGMSSSLPEDVQLKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKDIDGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA  QGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQMNGSSGYEEAGCQGLIAGINAALKLQGKEPLILKRSDAYIGVLIDDLVTKGTQEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R +RF K           LK++ +T+
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTEMGHKIGLVKEDRYERFTKRKTAIEDEIERLKNIQITN 487

Query: 486 KN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           K         L+S  +      K  + YE +  P+ +   +  +  D  +    V E++ 
Sbjct: 488 KQEVNKFLEGLNSAGLK-----KPISLYELIKRPELNYFVVKDLDKDRAELPRDVQEQVN 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ + ++ K  E RLIPK+FDY  +  L  E  +KL  +KP N+ QAS+
Sbjct: 543 IISKYEGYIQKQLEQVEQFKKLENRLIPKEFDYKLVKGLRTEAIQKLDKIKPVNIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLI +++
Sbjct: 603 ISGVSPADISVLLIVLEQ 620


>gi|291526552|emb|CBK92139.1| glucose-inhibited division protein A [Eubacterium rectale DSM
           17629]
          Length = 646

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/631 (42%), Positives = 384/631 (60%), Gaps = 26/631 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVR
Sbjct: 5   FVEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + 
Sbjct: 65  EIDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIR 124

Query: 121 QGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           QGEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +
Sbjct: 125 QGEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L  S +    +  R KTGTPAR+D +++ + K E+QF DER++PFSF TD   +   Q
Sbjct: 185 NHLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDERVVPFSFTTDPESVQIDQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EP
Sbjct: 245 VSCWLTYTNSKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE 
Sbjct: 305 EGLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEF 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 365 KKIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R          Y+++   
Sbjct: 425 KKNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKER----------YDYVCKK 474

Query: 478 LKSLVLTSKNLSSTSISFKQD-------------GKTRTAYEFLSYPDFSIQNLFSICPD 524
            + +    + +S  +I  + D                 T  E +  P+     L  I PD
Sbjct: 475 KELIDKEIERVSHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPD 534

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
             K S    E++ I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL
Sbjct: 535 RPKLSDDTREQINILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKL 594

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  +P ++ QAS+I G+TPA +++LL+++++
Sbjct: 595 NEFQPLSIGQASRISGVTPADISVLLVFLEQ 625


>gi|226326137|ref|ZP_03801655.1| hypothetical protein COPCOM_03956 [Coprococcus comes ATCC 27758]
 gi|225205679|gb|EEG88033.1| hypothetical protein COPCOM_03956 [Coprococcus comes ATCC 27758]
          Length = 630

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/618 (43%), Positives = 380/618 (61%), Gaps = 12/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD++V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 14  AYDIVVVGAGHAGCEAALACARLGLKTIVFTVSVESIAMMPCNPNIGGTSKGHLVRELDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +QENL++ QGEV
Sbjct: 74  LGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKNKYSNTMRQTLENQENLEIRQGEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +     ++ RC  VVL TGT+L+     G +    G  G   +N L +
Sbjct: 134 VNILVEDGSVTGVQTYSGAIYRCKAVVLCTGTYLKARCIYGDVSTHTGPNGLQAANYLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGI 242
              +      R KTGTPAR+D ++I + K E+QF DER++PFSF TD   +   Q  C +
Sbjct: 194 CLKELGIKMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFTTDPEDVQIEQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  S +YSG I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL T
Sbjct: 254 TYTNPTTHEIIRKNLDRSPLYSGMIEGTGPRYCPSIEDKIVKFADKERHQVFIEPEGLET 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q++  R++PGLE   I++  YAIEYD I+ ++L PTLE K I G
Sbjct: 314 NEMYIGGMSSSLPEDVQYEMYRSVPGLEHAKIVKNAYAIEYDCIDARQLHPTLEFKSIHG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+ +YIGV+IDDL +K   E
Sbjct: 374 LFSGGQFNGSSGYEEAAAQGLIAGINAALEVLGREQLILDRSQAYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT IG K+G I +   +R+   + +   +R  +  L 
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADQRLTEIGHKIGLISD---ERYQMLLDKEEIIRKEIHRLE 490

Query: 483 LTSKNLSSTSISFKQDGKT------RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
            T+   S     F  +  +       T  E +  P+ + + L  I      +FS  ++E+
Sbjct: 491 HTNVGTSQEITDFLTNCDSTPLTSGSTLAELIKRPELNYKLLEPIDHMRTERFSREIMEQ 550

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ+ + ++ K  E R IP D DY ++P+L  E  +KL   +P ++ QA
Sbjct: 551 IDINIKYEGYIKRQLKQVEQFKKLETRKIPTDIDYDAVPSLRIEAVQKLKQFRPLSIGQA 610

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++PA +++LL+Y+
Sbjct: 611 SRISGVSPADISVLLVYL 628


>gi|260434562|ref|ZP_05788532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8109]
 gi|260412436|gb|EEX05732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8109]
          Length = 643

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/618 (44%), Positives = 382/618 (61%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            G  T    E+  IS I     S+     V+LT GTFL G I +G   + AGR G+  + 
Sbjct: 130 TGLETTGEGEQQRISGIRTYFGSVYGADAVILTAGTFLGGRIWVGHQSMAAGRAGEQAAE 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q+ 
Sbjct: 190 GLTEALQQLGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQMS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 250 CHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LETK+
Sbjct: 310 RDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLETKR 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYIG MIDDL SK 
Sbjct: 370 VRGLFSAGQLNGTTGYEEAAAQGLVAGVNAARLIGGQEPVHFPREGSYIGTMIDDLVSKD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  L+
Sbjct: 430 LREPYRVLTSRSEYRLILRGDNADRRLTPLGRELGLIDDRRWQLFEDKLQAMEGEKQRLE 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ L   +  + ++  +     +   T  + L  P     +L             V E  
Sbjct: 490 TVRLKVSDPVAPAVEKETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPMPVREGA 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL+ ++P  L QAS
Sbjct: 550 EIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLAAIQPSTLGQAS 609

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++ A +  LL++++
Sbjct: 610 RIPGVSKADITALLMWLE 627


>gi|121608050|ref|YP_995857.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Verminephrobacter eiseniae EF01-2]
 gi|121552690|gb|ABM56839.1| glucose inhibited division protein A [Verminephrobacter eiseniae
           EF01-2]
          Length = 636

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/626 (44%), Positives = 376/626 (60%), Gaps = 31/626 (4%)

Query: 23  VAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV 82
            AA+LG  T L+T    T+G MSCNP+IGG+GKGHLV+E+DAL G M    D +GIQFR+
Sbjct: 2   AAARLGQRTLLLTQSLETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDESGIQFRI 61

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
           LN  KGPAVR  R QADR LY+ A++R + +Q  L + Q  V     E + +   V Q  
Sbjct: 62  LNRSKGPAVRATRAQADRLLYKAAIRRRLENQPGLWLFQQAVDDLMLEGDRVVGAVTQVG 121

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
            +     VVLT GTFL G IH+G     AGR G+  +  L     +     GRLKTGTP 
Sbjct: 122 VVFCARAVVLTAGTFLDGKIHVGLSHYAAGRAGEPSAIGLSARLKELKLPQGRLKTGTPP 181

Query: 203 RLDGKTIIWDKTEKQFAD-------ERLIP-FSFMTD-----KITNRQIECGITRTNLET 249
           R+DG++I W + E+Q  D          +P FSFM       ++  +Q+ C IT TN  T
Sbjct: 182 RIDGRSIDWSQCEEQPGDGMPGGVNAGQVPVFSFMAHAYGGARMHPQQLPCWITHTNQRT 241

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H II      S +++G I+  GPRYCPS+EDKI RF +++ HQ+FLEPEGL T  VYPNG
Sbjct: 242 HAIIRSGFDRSPMFTGSIEGVGPRYCPSVEDKINRFADKDSHQVFLEPEGLGTHEVYPNG 301

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           IST+LP +IQ+Q +R++ GLE  +I+RPGYAIEYDY +P+ L    ET++I GLF AGQI
Sbjct: 302 ISTSLPFDIQYQLVRSMAGLENAHILRPGYAIEYDYFDPRALKSNFETRQIRGLFFAGQI 361

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGTTGYEEAAAQGL AG+N+A +          R  +Y+GV++DDL +KGV EPYRMFTS
Sbjct: 362 NGTTGYEEAAAQGLFAGVNAALQCRGDAPWLPGRDQAYLGVLVDDLITKGVTEPYRMFTS 421

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL- 488
           RAE+R+ LR DNAD RLT +G ++G + + R + F++           LK+  +  +NL 
Sbjct: 422 RAEFRLQLREDNADMRLTEVGRRMGLVDDARWEVFSRKRDAVLRETERLKATWVNPRNLP 481

Query: 489 --SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-------------VI 533
              S  +  K      + +E L  PD     L S+  D  K+++              V+
Sbjct: 482 DIESGRVLGKPMAHEYSLFELLRRPDVDYAGLMSL--DGGKYAAADVSRETLGMLSESVV 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I + YA Y  RQ  E +     E   +P   DY+ + ALS E ++ LS  +P  L 
Sbjct: 540 EQVEIAAKYAGYIERQKGEVERAAHFETLRLPAGLDYAQVTALSIEARQVLSRHRPETLG 599

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+TPAA++LLL+++KK   K
Sbjct: 600 QASRITGITPAAISLLLVHLKKGGFK 625


>gi|296330031|ref|ZP_06872515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676755|ref|YP_003868427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153070|gb|EFG93935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414999|gb|ADM40118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 628

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 381/618 (61%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTMLQGIVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q  +  R   VV+TTGT+LRG I +G L   +G     PS  L   
Sbjct: 128 RLIVEDGECRGVITQTGAHYRAKAVVMTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   +I + KTE Q  D+    FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVKSDSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + +TH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPKTHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI+ L+ 
Sbjct: 308 YVQGLSTSLPEDVQQRMLATIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKITNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG ++G I + R   F K        +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIKP 487

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+ 
Sbjct: 488 SPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPPEVPVPQDVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKNVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|301116049|ref|XP_002905753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Phytophthora infestans T30-4]
 gi|262109053|gb|EEY67105.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Phytophthora infestans T30-4]
          Length = 696

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/616 (45%), Positives = 384/616 (62%), Gaps = 28/616 (4%)

Query: 25  AKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN 84
           ++ GA TAL+T K +TIG MSCNP+IGG+GKG LVRE+DA+ GLMG+VADAAGIQFR+LN
Sbjct: 49  SRTGAKTALVTQKLATIGEMSCNPSIGGVGKGTLVREVDAMGGLMGQVADAAGIQFRMLN 108

Query: 85  VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK---------NIIS 135
             KGPAVRGPR Q DR+LY+  +Q+ +    NL +++  V     EK           + 
Sbjct: 109 SAKGPAVRGPRAQMDRDLYQQGIQKALQELPNLWLVEDGVDDLMLEKINQSNDDVEERVK 168

Query: 136 SIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGR-MGDS-----PSNSLFNSFMK 188
            +V      I+ S VV+TTGTFLRG+I+ G  ++IPAGR M D+     P+  L  +  +
Sbjct: 169 GVVTSSGREIQASQVVITTGTFLRGMIYQGPDIRIPAGRHMRDTAGLEPPAVGLAQTLER 228

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIECGITR 244
             F  GRLKTGTP RLDG+TI +   E Q +D    PFSF+ +     + ++Q+ C  T 
Sbjct: 229 CKFPLGRLKTGTPPRLDGRTIDYSDLEVQPSDNPPKPFSFLNEHKQVPLADKQVVCHATY 288

Query: 245 TNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TN ++HRI+ +N+     Y G  D +  GPRYCPSI+ K+VRF +R+ HQ++LEPEGLNT
Sbjct: 289 TNEDSHRIVRDNLHMLPQYDGGRDGEGVGPRYCPSIDVKVVRFADRSRHQLWLEPEGLNT 348

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            +VYPNGISTALPE +Q + +RTI GL+KV IIR GY++EYDY++P+ L PTLETKK+SG
Sbjct: 349 HLVYPNGISTALPENLQLELLRTIKGLKKVEIIRAGYSVEYDYVDPRSLHPTLETKKLSG 408

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQG+VAG+N+   +   + +   R D++ GV+IDDL S G  E
Sbjct: 409 LFLAGQINGTTGYEEAAAQGVVAGMNAGLSAMGREPLILDRADAFTGVLIDDLISLGTTE 468

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC-IGERRQKRFAKYIQEYNFLRSLLKSL 481
           PYRMFTSR+E+R+ LR DNAD RLT    + G  I   R ++  +  +   + R  L   
Sbjct: 469 PYRMFTSRSEFRLLLRADNADLRLTRKAFEHGAGIPSERMEKLERKEKAMEYARQALDEF 528

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLVIERL 536
           V      +   +    DG  R+A + L++   + Q++  +        A      + E +
Sbjct: 529 VRDPHEWNRYGVKVGLDGVKRSAAQILAFSTVTPQDIERLWRQVGYEHADALPDEIKEFM 588

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E  YA     Q  E +  + ++   IP+  DYS LP +SNE +EKL   +P  +  AS
Sbjct: 589 KTECLYATQLRAQHQEIRVFRNKQHVQIPEWVDYSELPMISNEEREKLQQAQPATIHAAS 648

Query: 597 KIEGMTPAALNLLLIY 612
           +I G+  A L LL  Y
Sbjct: 649 RIAGIRSATLLLLYQY 664


>gi|195487892|ref|XP_002092085.1| GE13994 [Drosophila yakuba]
 gi|194178186|gb|EDW91797.1| GE13994 [Drosophila yakuba]
          Length = 661

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/634 (44%), Positives = 413/634 (65%), Gaps = 27/634 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTMLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                   +T+    + +++    ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCTGVLLASGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKSSVDYSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSPLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHGDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F    Q    L
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTKKGYEFGLVSSDRYQHFQ---QTEERL 504

Query: 475 RSLLKSLVLTSKNL----SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF 528
           +S ++SL    K+      +  +   +    +TA++ L  P  + +I+ L  I P+   +
Sbjct: 505 QSAIESLRRLRKHTHYWRQALDLPKAKASVEKTAFDMLGIPADNITIEQLIQIHPNELSW 564

Query: 529 ---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKL 584
                 + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL
Sbjct: 565 LKGERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKL 624

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++++P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 625 TLIQPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|296198575|ref|XP_002746780.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Callithrix
           jacchus]
          Length = 700

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 289/630 (45%), Positives = 406/630 (64%), Gaps = 29/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +++          V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVIL----AFIFERVILTTGTFLRGMIVIGLEMHPAGRLGDQ 212

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSFM + +  + 
Sbjct: 213 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSLPFSFMNETVWIKP 272

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++     I+  GPRYCPSIE K++RF  R  HQ++
Sbjct: 273 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETIR--GPRYCPSIESKVLRFPNRQ-HQVW 329

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 330 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 389

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+IDD
Sbjct: 390 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVNRKPPFVVSRTEGYIGVLIDD 449

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 450 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLEE 509

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S   KNL    SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 510 GISVLKSIEFSSSKWKNLIPEASISTSRSLPVR-ALDVLKYEEVDVDSLAKAVPEPLKKY 568

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 569 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSHEVREKL 628

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 629 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 658


>gi|158321889|ref|YP_001514396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkaliphilus oremlandii OhILAs]
 gi|205831486|sp|A8MKR8|MNMG_ALKOO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158142088|gb|ABW20400.1| glucose inhibited division protein A [Alkaliphilus oremlandii
           OhILAs]
          Length = 630

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/627 (42%), Positives = 390/627 (62%), Gaps = 13/627 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEAA   A++G ST ++T     I  + CNP+IGG GKGHLVREIDA
Sbjct: 8   NYDVVVVGAGHAGCEAALATARMGYSTMMLTMSLDAIAMLPCNPSIGGTGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y + M++ + ++ NL ++QGEV
Sbjct: 68  LGGEMGLNIDKTFIQSRMLNTAKGPAVHSLRAQADKTRYHIEMKKMLENEPNLHLLQGEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  +V +  ++     V+L TG +L+  I +G++   +G  G  P+  L  
Sbjct: 128 VDIIVEDNTVKGVVTKTGAIYYGKAVILATGVYLKSKIFMGEVNYESGPNGLFPALYLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                  +  R KTGTPAR+   +I + K   Q  DE ++PFSFM + +   QI C +TR
Sbjct: 188 KLKALGCNMRRFKTGTPARIHKDSIDFSKVSVQIEDEEIVPFSFMNEALEKEQIPCWLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  SA+Y GDI+S GPRYCPSIEDKIVRF E+  HQIF+EPEG  T  
Sbjct: 248 TTEETHRIIKENLGRSAMYRGDIESTGPRYCPSIEDKIVRFSEKPSHQIFIEPEGAETKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST+LPEE+Q Q +R++ GLE   I+RP YAIEYD I+P +L  +LE K I+ LF
Sbjct: 308 MYIQGFSTSLPEEVQVQMVRSVIGLENAIIMRPAYAIEYDCIDPTQLKASLEVKHINNLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K    D     R+++YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGSSGYEEAAAQGLMAGINAVLKIRGEDPFILDRSEAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  LG +   ++ R+ +Y+ +   +++ ++ L  T
Sbjct: 428 RMMTSRSEYRLVLRQDNADLRLTEKGYALGLV---KEDRYERYLLKKEHIKNEMERLKTT 484

Query: 485 SKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE---RL 536
           + + +  +   ++   T      + Y+ L  P+ + +N+  I  D  +   L+ +   + 
Sbjct: 485 NVSPTIANPVLERAESTPIKVGMSLYDLLKRPELTYENIKEI--DGTRPQDLMKDAQFQC 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++   Y  Y  +Q+ +  + K  E + + +D DY+ +  L  E ++KL+ ++P ++ QAS
Sbjct: 543 EVMIKYEGYIEKQLRQIDQFKKLENKKLREDIDYNEIDGLRIEARQKLNAIRPLSVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEI 623
           +I G++PA +++LLIY+++   K  E+
Sbjct: 603 RISGVSPADISVLLIYLEQKRRKKGEV 629


>gi|167571772|ref|ZP_02364646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia oklahomensis C6786]
          Length = 630

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/604 (45%), Positives = 374/604 (61%), Gaps = 15/604 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR+LN  
Sbjct: 1   MGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQFRILNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IH+G      GR GD  + SL +   +     GRLKTGTP R+DG
Sbjct: 121 ARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYS 264
           +TI + K E+Q  D   IP FSF+     + +Q+ C +T TN  TH II   +  S +Y+
Sbjct: 181 RTIDFSKLEEQPGDLDPIPVFSFIGRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYT 240

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+  YPNGIST+LP ++Q + + 
Sbjct: 241 GVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVH 300

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GLF AGQINGTTGYEEAAAQGL+
Sbjct: 301 SMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGLFFAGQINGTTGYEEAAAQGLL 360

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EPYRMFTSRAEYR+SLR DNAD 
Sbjct: 361 AGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADM 420

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKT 501
           RLT IG +LG + + R   F +     +     L++  +T K L    +T++  K     
Sbjct: 421 RLTEIGRELGVVDDVRWGAFNRKRDAVSRETERLRTTWVTPKTLPAEEATALLGKPIDHE 480

Query: 502 RTAYEFLSYPDFSIQNLFSI----C------PDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +  E L  P  S + +  +    C       D     + + E+++I   Y  Y  RQ  
Sbjct: 481 YSLAELLRRPGVSYEGVCELRNGECGPTEPLADDEILLAQIKEQIEIGIKYQGYIERQAG 540

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           E +     E   +P   DY+ +  LS E+ +KL+  +P  + QAS+I G+TPAA++LL++
Sbjct: 541 EIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGVTPAAISLLMV 600

Query: 612 YIKK 615
           ++KK
Sbjct: 601 HLKK 604


>gi|332824605|ref|XP_003311450.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 692

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/630 (44%), Positives = 406/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K+
Sbjct: 514 GISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|310659880|ref|YP_003937601.1| glucose-inhibited cell-division protein [Clostridium sticklandii
           DSM 519]
 gi|308826658|emb|CBH22696.1| glucose-inhibited cell-division protein [Clostridium sticklandii]
          Length = 631

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 388/624 (62%), Gaps = 9/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEAA  +A+LG  T ++T     I  + CNP+IGG GKGHLVREIDA
Sbjct: 7   TYDVVVVGAGHAGCEAALASARLGMKTLVVTLSLDAIAFLPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R Q D+ +Y + M++ + +  NLD++  EV
Sbjct: 67  LGGEMGLNTDKTFIQSRMLNTAKGPAVHSLRAQNDKNMYHMEMKKTLENTPNLDIVMDEV 126

Query: 125 AG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + E   ++ ++ +  +M     V+L TG +L+  ++IG++   +G +G + ++ L 
Sbjct: 127 IEILHDEDKKVTGVLTKLRAMYEAKAVILATGVYLKSKVYIGEVNYSSGPIGLNSADGLT 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K      R KTGTPAR+   +I + K E Q  DE+++PFSFM D I   Q+ C +T
Sbjct: 187 ESLEKLGLPLRRFKTGTPARVHADSIDFSKMEVQHGDEKIVPFSFMNDYIGENQVVCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II+ N+  SA+Y GD+ S GPRYCPSIEDK+VRF ++  HQ F+EPEGLNT 
Sbjct: 247 RTTPKTHEIILNNLGRSALYRGDMDSKGPRYCPSIEDKVVRFKDKETHQFFVEPEGLNTK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G S++L  E+Q +   T+ GLE   ++RP YAIEYD I+P  L P+LE K +SGL
Sbjct: 307 EYYIQGFSSSLAYEVQLEMYHTVKGLENAKLMRPAYAIEYDCIDPLHLKPSLEIKDVSGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA+QGL+AGIN+ R     +     R++SYIGV+IDDL +KG  EP
Sbjct: 367 FSAGQFNGTSGYEEAASQGLIAGINAVRHIKDEEPFILDRSESYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G ++G + +   +R+ K+I +   + + LK L +
Sbjct: 427 YRIMTSRAEYRLLLRQDNADLRLTEKGREVGLVTD---ERYEKFITKKTQIDAELKRLKI 483

Query: 484 TSKNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                   +   ++ G     +T   YEFL   + +   L  +    ++ SS VIE+ +I
Sbjct: 484 EKVKPDEANPLLEEMGASPLSRTLPLYEFLKRTEVNYTVLDKLEKGNKELSSQVIEQCEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ + +  K  EK+ +P+  DY ++  L  E ++KL+ +KPFN+ QAS+I
Sbjct: 544 TVKYEGYIKKQLDQVESFKKLEKKKLPETLDYETISGLRIEARQKLNEIKPFNIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++PA +++LLIY++    K  E
Sbjct: 604 SGVSPADISVLLIYMQTQKAKSKE 627


>gi|225181152|ref|ZP_03734598.1| glucose inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
 gi|225168121|gb|EEG76926.1| glucose inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
          Length = 627

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/614 (44%), Positives = 371/614 (60%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y V+VIG GHAG EAA  +A++G  T L+T     +  M CNPAIGG  KGHLVRE+DAL
Sbjct: 8   YHVVVIGAGHAGSEAALASARMGCKTLLLTLNLDAVALMPCNPAIGGPAKGHLVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ R+LN  KGPAV   R QAD+ +Y+  M+  + +  NLD+ Q  V 
Sbjct: 68  GGEMGKVIDRTKIQIRMLNTAKGPAVHALRAQADKWVYQREMRTVLENTPNLDLQQATVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +   I  ++ Q+ +M +   VVLT GT+LRG I +G      G  G   S  L   
Sbjct: 128 RFQVKGGRIRGVITQNGTMYKTQAVVLTAGTYLRGRIIVGASMTAGGPNGQLASTKLSGY 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   +  R KTGTP R+   +I + KT  Q  DE    FSF         + C +T T
Sbjct: 188 LKRIGLELLRFKTGTPPRIHRDSIDFSKTVIQPGDEDPFSFSFAQVPPKIESVPCWLTHT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETHR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF ER  HQ+FLEPEG NT   
Sbjct: 248 TEETHRVIQENLHRSPLYAGDIEGVGPRYCPSIEDKVVRFSERPSHQVFLEPEGRNTAEF 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   ++TIPGLE V I+RPGYAIEYD I+P +L PT+ETK ++GLF 
Sbjct: 308 YVQGMSTSLPEDVQRAMLKTIPGLENVLIMRPGYAIEYDCIDPLQLKPTMETKTVAGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQING++GYEEAAAQG+VAGIN+A        +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGSSGYEEAAAQGIVAGINAALTFKGQPPLHIDRSMAYIGVLIDDLVTKGTSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLLKSL 481
           M TSRAEYR+ LR DNAD RLTP+G + G + E R ++F +      +E   L S+  S 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTPLGHRAGLVSEERFQKFQEKCRAVEEEIERLNSVNISP 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                +L     S    G    A + L  P+ +   +  I  +  + S     +++I+  
Sbjct: 488 AAAVNDLLQEKGSKPLSGPV-AAGQLLKRPELTYDAIIHILGEEHRLSGEAARQVEIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E + +P+D  Y  L  LS E  EKL  ++P ++ QAS+I G+
Sbjct: 547 YQGYIEKQLQQIEKYKKMENKALPEDLPYCDLDGLSTEAVEKLMKIRPRSVGQASRISGV 606

Query: 602 TPAALNLLLIYIKK 615
           +PA + +LL+Y+++
Sbjct: 607 SPADIAVLLVYMEQ 620


>gi|167462791|ref|ZP_02327880.1| glucose inhibited division protein A [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381367|ref|ZP_08055370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           GidA-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154943|gb|EFX47214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           GidA-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 631

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/614 (44%), Positives = 381/614 (62%), Gaps = 6/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCE+A  AA++G ST L+T     +  M CNP+IGG  KGH+VREIDAL
Sbjct: 8   YDVIVIGAGHAGCESALAAARMGCSTLLLTINLDMVAFMPCNPSIGGPAKGHVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+  M+  I  Q NL + QG V 
Sbjct: 68  GGEMGRNIDKTYIQMRMLNTGKGPAVHALRAQADKFLYQQTMKETIEKQPNLTMRQGMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++ +  +      +VLTTGT+LRG + +G+L   +G     PS  L  S
Sbjct: 128 ELIVEAGVCKGVITKSGAEYYGKAIVLTTGTYLRGKVIMGELMYESGPNNQQPSIKLSES 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
                F+  R KTGTP R+  ++I + KTE Q  D     FS+ T + +   Q+ C +T 
Sbjct: 188 LRNLGFELVRFKTGTPPRVHKESIDFSKTEIQPGDAEPEFFSYETREPVKEEQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ET  +I EN+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T  
Sbjct: 248 TSAETQELITENLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGRYTSE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST++PE++Q   +RTIPGLE V ++R GYAIEYD + P +L PTLETK + GLF
Sbjct: 308 YYVQGLSTSMPEDVQLSMLRTIPGLECVEMMRTGYAIEYDAVIPTQLKPTLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + I   R++ YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPIILDRSEGYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKS 480
           R+ TSRAEYR+ LR DNAD RLTPIG ++G I E R + F     K  QE   LR+    
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTPIGYEIGLITEERYQAFLNKKGKVEQEIERLRTTKVR 487

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                ++L + + + + +         L  P     ++  + P   +    + E+++I+ 
Sbjct: 488 PEAFIQDLLAEAGTVQLNNAV-DLLSLLRRPQIMYSHIEQMSPSPLELDGEMKEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y+ +Q+ + + +K  EK+LIP D  Y  +  ++ E K+KL+ ++P ++ QAS+I G
Sbjct: 547 KYSGYSEKQLAQVERLKKMEKKLIPDDIVYEEIHGIATEAKQKLAKIRPISIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LL+Y++
Sbjct: 607 VSPADISILLVYLE 620


>gi|331268195|ref|YP_004394687.1| glucose inhibited division protein A [Clostridium botulinum
           BKT015925]
 gi|329124745|gb|AEB74690.1| glucose inhibited division protein A [Clostridium botulinum
           BKT015925]
          Length = 630

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/618 (42%), Positives = 389/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV VIG GHAGCEAA  +A+LG +T +     +++  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVAVIGAGHAGCEAALASARLGINTIVFATDLASVAMMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  + + ENL + Q EV 
Sbjct: 68  GGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKKKYSERMKHVLETTENLQLKQAEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  ++ ++ +  R    +L TG +L+  I IG +    G  G +P+N L  S
Sbjct: 128 EVDIENGKVKGVLTKNGAYYRVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ K++ + K  +Q  D+ ++PFSFM++ I   QI C +T +
Sbjct: 188 LIDSGIKLTRFKTGTPARINRKSVDFSKMIEQKGDDDIVPFSFMSENIEREQISCYLTYS 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ +
Sbjct: 248 GDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K+I GLF 
Sbjct: 308 YVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKEIDGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA  QGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQMNGSSGYEEAGCQGLIAGINAALKLKGEKPLILKRSDAYIGVLIDDLITKGTQEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + + R  +F K   +       LKS+ +T+
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTEMGRKIGLVKDERYNKFTKRKNDIESEIERLKSIQITN 487

Query: 486 K--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           K        N++S+++      K  + YE +  P+ +   +  +  +  K    V E++ 
Sbjct: 488 KQEVNKFLENINSSALK-----KPISLYELIKRPELNYFVVEELDDNRPKLPRDVQEQVN 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ +  + K  E RLIPK+FDY+ +  L  E  +KL  +KP ++ QAS+
Sbjct: 543 IISKYEGYIQKQLEQVDQFKKLENRLIPKEFDYTEVKGLRKEAIQKLDKIKPVSIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLI +++
Sbjct: 603 ISGVSPADISVLLIVLEQ 620


>gi|119489483|ref|ZP_01622244.1| glucose-inhibited division protein A [Lyngbya sp. PCC 8106]
 gi|119454562|gb|EAW35709.1| glucose-inhibited division protein A [Lyngbya sp. PCC 8106]
          Length = 638

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/614 (44%), Positives = 375/614 (61%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++V+GGGH+GCEAA  +A+LG  T ++T     I    CNPA+G   K  L  E+DAL
Sbjct: 13  FDIVVVGGGHSGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGAPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   MQ  I +QENL + +G V 
Sbjct: 73  GGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMQNIIENQENLAIREGMVT 132

Query: 126 GFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +    +   +C  V+LTTGTFL GVI +G   + AGR G+  +  L +
Sbjct: 133 DVVLGENDEIIGVKTYFDVAFKCKAVILTTGTFLGGVIWVGNKSMSAGRAGEFAAVGLTD 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +  K  F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF  +    R Q+ C +T
Sbjct: 193 TLNKLGFETGRLKTGTPARVDKRSVNYSQLEPQPGDEEVRWFSFDPEVWVEREQMCCYLT 252

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETHRII EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG N  
Sbjct: 253 RTTAETHRIIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRNIP 312

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST LPE +Q Q +R++PGLEK  ++RP YA+EYDY+   + +PTL TK+I GL
Sbjct: 313 ELYIQGFSTGLPERLQLQMLRSLPGLEKCTMLRPAYAVEYDYLPATQCYPTLMTKRIEGL 372

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG+VAGIN+AR S   + I F R  SY+G +IDDL +K + EP
Sbjct: 373 FCAGQINGTTGYEEAAAQGIVAGINAARFSRNQEMIIFPREGSYLGTLIDDLCTKDLREP 432

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F          +  L S  +
Sbjct: 433 YRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWQLFEHKQANIIAEKERLHSTRI 492

Query: 484 TSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             ++    +I      K +   T  + L  P F   NL           S+  E  +IE 
Sbjct: 493 KERDEVGMAIVSDTQQKIKGSITLADLLRRPGFHYVNLERYNLGNPDIDSVEKEGAEIEV 552

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +  +I     R +P++ +Y  +  LS E +EKL+ ++P  + QAS+I G
Sbjct: 553 KYSGYLQRQQNQIDQISRHANRKLPENINYMMIETLSMESREKLTKVRPLTIGQASRIGG 612

Query: 601 MTPAALNLLLIYIK 614
           + PA +N LLIY++
Sbjct: 613 VNPADVNALLIYLE 626


>gi|120602377|ref|YP_966777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris DP4]
 gi|166222930|sp|A1VD34|MNMG_DESVV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120562606|gb|ABM28350.1| glucose inhibited division protein A [Desulfovibrio vulgaris DP4]
          Length = 629

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/621 (44%), Positives = 368/621 (59%), Gaps = 19/621 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IV+G GHAGCEAA   A++G +T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 13  YDCIVVGAGHAGCEAAMALARMGHATLLLTGNADRIGHLSCNPAIGGLAKGHMVKEIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y   ++R+I +Q NL V Q    
Sbjct: 73  GGMMGLWADEAGIQFRTLNSSKGPAVRATRAQIDRDAYLRVVRRDIFAQPNLRVWQDMAE 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +        R   V+LTTGTFL+G IH+G    P GR+GD+P+  L  S
Sbjct: 133 SIIVEGGRAAGVRTAYGQEFRAHHVLLTTGTFLQGRIHVGLNNFPGGRLGDAPATGLSAS 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E Q  D+   PFSF    +   Q+ C +T T
Sbjct: 193 LRAIGLELGRLKTGTTPRLLRDSIDFSLMEVQPPDDPPRPFSFRGPGVRLPQLPCHVTWT 252

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G IK  G RYCPSIEDK+ RF E+  HQ+F+EPEGL +   
Sbjct: 253 NERTHEAIRAGFDRSPMFTGVIKGTGARYCPSIEDKVARFPEKERHQVFVEPEGLESPEC 312

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP E+Q   I TIPGLE   I+RPGYAIEYDY +P +L  TLETK + GL+L
Sbjct: 313 YPNGIPTSLPLEVQKAMIATIPGLENAQIVRPGYAIEYDYADPVQLRSTLETKALRGLWL 372

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N +     +      R  +Y+ V++DDL +KG  EPYR
Sbjct: 373 AGQINGTSGYEEAAAQGLWAALNVSCTLRSMPPFLPGRDTAYMAVLVDDLVTKGTREPYR 432

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD RLT  G  LG + +   +RF+         R+ L SL+   
Sbjct: 433 MFTSRAEHRLLLRENNADARLTETGRALGLVDDTHWQRFSTK-------RAALHSLLDEL 485

Query: 486 KNLSSTSISFKQDGKTR----------TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +N   T  +  +D  +R          +  + L  P  ++ +L        +F+  V E 
Sbjct: 486 ENRRITPDAAARDIFSRLGEPAPTKGVSLADILRRPSLTLPDLAPFWEGVTRFADDVREE 545

Query: 536 LQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            +    Y+ Y  RQ  + A+  + E+  ++P+D DY+ +P L+ E+ EKL  ++P  L Q
Sbjct: 546 AETIVKYSGYLARQQELVARSARMEDT-VLPEDMDYTVIPGLTREIVEKLGKVRPHTLGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A++I G+TPAAL  L I ++K
Sbjct: 605 AARISGVTPAALTCLEIQLRK 625


>gi|220905196|ref|YP_002480508.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869495|gb|ACL49830.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 660

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 281/649 (43%), Positives = 379/649 (58%), Gaps = 39/649 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D IV GGGHAGCEAA   A++G S  LI+     +G +SCNPAIGGL KGH+ REIDA
Sbjct: 9   TFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKGHMAREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR+LN+ KGPAVR  R Q DR +Y+  +Q+ + S   L + Q  V
Sbjct: 69  LGGMMGLWADAAGIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPGLRIWQDSV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  +  + +            V+LTTGTFL G IH+G   IP GR+GD+P+  L +
Sbjct: 129 IEITAGDSRATGVRTAQGLEFSARHVLLTTGTFLDGRIHMGLTSIPGGRLGDAPALGLSD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F+ GRLKTGT  RL   +I +   E+Q  D+    FSF        Q+ C +T 
Sbjct: 189 SLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLPQVPCHVTW 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H II      S +++G IK  G RYCPSIEDKI RF +R  HQIFLEPEGL++  
Sbjct: 249 TNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLEPEGLDSAE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NGIST+LP ++Q   I  +PGLE   ++RPGYAIEYD+ +P +L PTLE+K + GL+
Sbjct: 309 VYANGISTSLPLDVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLESKAVPGLW 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAAAQGL A +N + +  ++      R ++Y+ V++DDL + G  EPY
Sbjct: 369 LAGQINGTSGYEEAAAQGLWAALNISCRLREMPPFLLGRDEAYMAVLVDDLVTSGTQEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAE+R+ LR DNAD RLTP G +LG + +     F +     N LRS L+   + 
Sbjct: 429 RMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRSGLEQKRIP 488

Query: 484 --------------TSKNLSSTSISFKQDGKT------RTAYEFLSYPDFSIQNLFSI-- 521
                         + ++  + +      GKT      RT  E L  P+  +  L ++  
Sbjct: 489 APGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDLHGLAALLR 548

Query: 522 ---CPD---ARKF--------SSLVIERLQIESSYAAYTGRQM-IEAKEIKFEEKRLIPK 566
              C D   A +F         + V E +Q E  YA Y  RQ  + A+  K E   L P 
Sbjct: 549 SCACEDTAAAAEFLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKLESTAL-PP 607

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D DY+++  LS E+ EKL  ++P +L QA +I G+TPAA+  L I++ K
Sbjct: 608 DLDYATVAGLSREVTEKLDRVRPLSLGQAGRISGVTPAAVGCLEIHLHK 656


>gi|113869584|ref|YP_728073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia eutropha H16]
 gi|123133494|sp|Q0K5L6|MNMG_RALEH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113528360|emb|CAJ94705.1| NAD/FAD-utilizing enzyme apparently involved incell division
           [Ralstonia eutropha H16]
          Length = 652

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/627 (45%), Positives = 386/627 (61%), Gaps = 15/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   KEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D +GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q     R   VVLT GTFL G IH+G      GR GD  + SL 
Sbjct: 125 VDDLMVEGDRVVGAMTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECG 241
                     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + +Q+ C 
Sbjct: 185 ARLKDLKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL 
Sbjct: 245 ITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNGIST+LP ++Q + + +I G+E  +I+RPGYAIEYDY +P+ L  +LE+K IS
Sbjct: 305 TNEFYPNGISTSLPFDVQLELVHSIRGMENAHILRPGYAIEYDYFDPRGLKASLESKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     LKS 
Sbjct: 425 EPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDARWDAFNRKRDAVSRETERLKST 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CP----DARK-F 528
            +    L    +  +  K   +  +  + L  P+   + L ++      P    DA    
Sbjct: 485 WVNPAMLPGEDAVPLLGKPIEREYSLADLLRRPEVRYEALMALQGGRHAPETPLDAEPML 544

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +  + E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+  +
Sbjct: 545 AEQIREQIEIGIKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLNQHR 604

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G+TPAA++LLL+++KK
Sbjct: 605 PETLGQASRISGVTPAAISLLLVHLKK 631


>gi|237742804|ref|ZP_04573285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 4_1_13]
 gi|229430452|gb|EEO40664.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 4_1_13]
          Length = 633

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/630 (43%), Positives = 381/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H+II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHKIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGS--TLLELLRRPEVTFEDIKYISEEIKGLD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LKGYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|238926047|ref|YP_002939565.1| glucose-inhibited division protein A [Eubacterium rectale ATCC
           33656]
 gi|238877724|gb|ACR77431.1| glucose-inhibited division protein A [Eubacterium rectale ATCC
           33656]
          Length = 646

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/631 (42%), Positives = 384/631 (60%), Gaps = 26/631 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVR
Sbjct: 5   FVEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + 
Sbjct: 65  EIDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIR 124

Query: 121 QGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           QGEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +
Sbjct: 125 QGEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L  S +    +  R KTGTPAR+D +++ + K E+QF D+R++PFSF TD   +   Q
Sbjct: 185 NHLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDDRVVPFSFTTDPESVQIDQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EP
Sbjct: 245 VSCWLTYTNSKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE 
Sbjct: 305 EGLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEF 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 365 KKIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R          Y+++   
Sbjct: 425 KKNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKER----------YDYVCKK 474

Query: 478 LKSLVLTSKNLSSTSISFKQD-------------GKTRTAYEFLSYPDFSIQNLFSICPD 524
            + +    + +S  +I  + D                 T  E +  P+     L  I PD
Sbjct: 475 KELIDKEIERVSHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPD 534

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
             K S    E++ I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL
Sbjct: 535 RPKLSDDTREQINILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKL 594

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  +P ++ QAS+I G+TPA +++LL+++++
Sbjct: 595 NEFQPLSIGQASRISGVTPADISVLLVFLEQ 625


>gi|237738381|ref|ZP_04568862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420261|gb|EEO35308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium mortiferum ATCC 9817]
          Length = 627

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/626 (43%), Positives = 386/626 (61%), Gaps = 21/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAGCEAA  +A++GA TA+ T     IG MSCNP+IGG  K HLV+EIDA
Sbjct: 3   NFDVIVVGAGHAGCEAALSSARMGAKTAIFTITLDNIGVMSCNPSIGGPAKSHLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   +Q RVLN KKGPAVR  R QAD+  Y   M++ + +  NL  IQG V
Sbjct: 63  LGGEMGRNIDKTFVQIRVLNTKKGPAVRALRAQADKVKYAKEMKKTLENCPNLSTIQGMV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  + +++    R   V+L TGTF+RG+IHIG+     GRMG+  S+ L  
Sbjct: 123 TDLVIEDGKIIGVKIREGVEYRAKMVILATGTFMRGLIHIGQNHFSGGRMGELSSDDLPL 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNR-QIECG 241
           S  K     GR KTGTP+R+D +TI + K E+Q  DE L+ FS  T  ++I NR QI C 
Sbjct: 183 SLEKAGIKLGRFKTGTPSRIDARTIDFSKVEEQPGDEELLKFSSRTSDEEIKNREQISCY 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN + H II  N   S +++G I+  GPRYCPSIEDK+ R+ ++N H +FLE EG  
Sbjct: 243 IAHTNEKVHEIIKSNKHRSPLFNGTIQGTGPRYCPSIEDKVFRYEDKNQHHLFLEREGSE 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LP ++Q   ++ I GLE  +I+R  YAIEYDYI P+E+  +LE++ + 
Sbjct: 303 TNEIYLGGLSSSLPTDVQEGMLKNISGLEDAHIMRYAYAIEYDYIPPQEIKYSLESRTVE 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL +KG  
Sbjct: 363 NLFLAGQINGTSGYEEAGAQGLMAGINAVRKLQGKEPVILDRADSYIGTLIDDLVTKGTN 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E   +R  K  ++   +++ L   
Sbjct: 423 EPYRMFTARSEYRLLLREDNADLRLSKIGYEIGLLPEEEYRRVQKKEKDVEEIKAKLMEN 482

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-- 534
            +   N     +  ++ G+T      T +E L  P  + Q++  I     + S + IE  
Sbjct: 483 YVGPSNPRVNEV-LEKRGETPLKDGVTYFELLRRPSVTFQDIKYIS----ELSDMKIEDY 537

Query: 535 ------RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
                 +++++  Y+ Y  R M   ++ K  E + IP D DY +L  +  E K+KL   +
Sbjct: 538 CRDTEYQVEVQVKYSGYIERSMKMIEKHKSLENKKIPADLDYDTLENIPKEAKDKLKAAR 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P N+ QAS+I G++PA + +LLIY+K
Sbjct: 598 PLNIGQASRISGVSPADIQVLLIYLK 623


>gi|209525128|ref|ZP_03273672.1| glucose inhibited division protein A [Arthrospira maxima CS-328]
 gi|209494537|gb|EDZ94848.1| glucose inhibited division protein A [Arthrospira maxima CS-328]
          Length = 637

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/619 (43%), Positives = 377/619 (60%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +++IV+GGGH+GCEAA  +A+LG  T L+T     IG   CNPA+G   K  L  E+DAL
Sbjct: 13  FEIIVVGGGHSGCEAALASARLGCRTLLLTLNLDKIGWQPCNPAVGAPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +G V 
Sbjct: 73  GGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMRQIVENQENLSIREGMVT 132

Query: 126 ----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G N E   I  +         C  ++LTTGTFL G+I +G   +PAGR G+  +  
Sbjct: 133 DLVLGLNDE---IIGVKTYFGVAFACKALILTTGTFLGGIIWVGNKSMPAGRAGEFAAVG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L ++  +  F+TGRLKTGTPAR+D +++ +   E Q  DER+  FSF  +    R Q+ C
Sbjct: 190 LTDTLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDERVRWFSFDPEVWVEREQMNC 249

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 250 YLTRTTAETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 309

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q + +R++PGLE   ++RP YA+EYDY+   + +PTL TKKI
Sbjct: 310 HIPELYIQGFSTGLPEKLQLEMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKKI 369

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQG+VAGIN+ +     D I F R  SYIG +IDDL +K +
Sbjct: 370 EGLFCAGQINGTTGYEEAAAQGIVAGINAVKLVRGEDMIVFPREQSYIGTLIDDLCTKDL 429

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +  ++ N +    + 
Sbjct: 430 REPYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWELFQQ--KQANIIAEKQRL 487

Query: 481 LVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                K      I+   D + +     +  E L  P F   NL        + S    E 
Sbjct: 488 DQTRVKERDEIGIAIASDTQQKIKGSISLAELLRRPGFHYGNLEHYHLGNSQLSLEEKEG 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +IE  Y+ Y  RQ  +  +I     R +P+D DY ++  LS E +EKL+ +KP  + QA
Sbjct: 548 AEIEIKYSGYMERQQNQIDQISRHANRQLPRDLDYLTIETLSMESREKLNRIKPLTIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +N LLIY++
Sbjct: 608 SRIGGVNPADINALLIYLE 626


>gi|255505831|ref|ZP_05348360.3| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bryantella formatexigens DSM 14469]
 gi|255265688|gb|EET58893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bryantella formatexigens DSM 14469]
          Length = 627

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/629 (43%), Positives = 379/629 (60%), Gaps = 25/629 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 9   DIVVVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVREIDALG 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + E+L + Q EV  
Sbjct: 69  GEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKKDYSYQMRKTLENTEHLTIKQAEVTE 128

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   +  +     ++  C   +L TGT+LR     G +    G  G   +N L +S 
Sbjct: 129 IIVQDGTLKGVKTFSGAVYYCRACILCTGTYLRARCIYGDVSNYTGPNGLQAANHLTDSL 188

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGITR 244
            +      R KTGTPAR+DG+TI + K E+Q+ DER++PFSF TD  ++   Q+ C +T 
Sbjct: 189 KEHGIAMYRFKTGTPARIDGRTIDYSKMEEQYGDERVVPFSFSTDPEEVQIDQVSCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II EN+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG  T+ 
Sbjct: 249 TNEKTHEIIRENLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGRYTNE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q    R++PGLEK  I+R  YAIEYD I+ ++L+PTLE KKISGLF
Sbjct: 309 MYVGGMSSSLPEDVQVAMYRSVPGLEKAEIVRNAYAIEYDCIDSRQLYPTLEFKKISGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQ NG++GYEEAAAQGL AGIN+A K+   + + F R++SYIGV+IDDL +K   EPY
Sbjct: 369 SGGQFNGSSGYEEAAAQGLAAGINAAMKTLGREQVIFDRSESYIGVLIDDLVTKENREPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLTP+G + G I +            YN L    K +   
Sbjct: 429 RMMTSRSEYRLLLRQDNADLRLTPLGHEFGLIPD----------TVYNILLDKKKQIEEE 478

Query: 485 SKNLSSTSIS--------FKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  +    I          +Q G T      T  E +  P+     L ++ PD  +    
Sbjct: 479 TDRVEKLKIGAVDNVQEFLQQHGSTPLKTGTTLGELIRRPELDYDMLAALDPDRPQLLRG 538

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E++ I   Y  Y  RQM + +  K  E R IP+D +Y  +  L  E ++KL + +P +
Sbjct: 539 VAEQVNINIKYDGYITRQMKQVEHFKKLENRKIPEDINYRDIHGLCIEAQQKLEMYRPVS 598

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           L QAS+I G++PA +++LL+Y+K    KL
Sbjct: 599 LGQASRISGVSPADISVLLVYLKSGYAKL 627


>gi|196011978|ref|XP_002115852.1| hypothetical protein TRIADDRAFT_30217 [Trichoplax adhaerens]
 gi|190581628|gb|EDV21704.1| hypothetical protein TRIADDRAFT_30217 [Trichoplax adhaerens]
          Length = 651

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/635 (45%), Positives = 399/635 (62%), Gaps = 32/635 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG E+AA AA+ G+   LI+H  + IG MSCNP+ GG+GKGHL+REIDAL
Sbjct: 18  YDVIVVGGGHAGTESAAAAARNGSRVCLISHDLTKIGEMSCNPSFGGIGKGHLIREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GR+ D +GI ++VLN +KGPAV G R Q DR LYR  MQ EI S  NL ++QG V 
Sbjct: 78  DGLCGRICDLSGIHYKVLNKRKGPAVWGLRAQMDRNLYRSNMQVEIKSTPNLSLLQGAVV 137

Query: 126 GF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK-LKIPAGRMGDSPSN 180
                 + +K +  + V+ + S+I+  +VVLTTGTFLRG I+IGK L I   R     +N
Sbjct: 138 DLILSSDGDKQLGRNYVLHNGSIIKARSVVLTTGTFLRGKIYIGKTLSIFLNR---DVTN 194

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            + + +   D    R+  GTP RLDG+TI + K   Q  DE+  PFSF+   +      Q
Sbjct: 195 FIDHEYEIMDPLGNRVIHGTPPRLDGRTIDYKKLVIQHGDEKPTPFSFLNRAVKIEPAEQ 254

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR-------YCPSIEDKIVRFGERNG 290
           + C +T TN  TH II  ++  +     ++   GPR       YCPSIE K++RF  RN 
Sbjct: 255 LPCFLTLTNSNTHSIITRHLHLTPHIKEEV--CGPRQYLLFMQYCPSIESKVIRFRGRN- 311

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLEPEG ++ +VYPNGIS  LPE IQ   IR++ GLE V I++ GY +EYDYI+P++
Sbjct: 312 HQIFLEPEGFDSSIVYPNGISCTLPENIQKAMIRSVHGLEDVEIVQTGYGVEYDYIDPRQ 371

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L P+LET+K+SGLF AGQINGTTGYEEAAAQG++AGINS+     +  +   R D YIGV
Sbjct: 372 LKPSLETRKVSGLFFAGQINGTTGYEEAAAQGIIAGINSSLMVKGMSPLILDRADGYIGV 431

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDLT++G  EPYRMFTSRAE+R+ LRPDNAD RLT  G K+G + E+R ++  K   +
Sbjct: 432 LIDDLTTRGTTEPYRMFTSRAEFRLRLRPDNADLRLTEKGYKVGIVREQRFEKMVKIKTK 491

Query: 471 YNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           ++   + L+ L  +  +  +  ++S  +   T+  + F S  +  I +  S+   +R F 
Sbjct: 492 FDKAINTLRELKFSESSWKARCNLSGMRHSVTKVNF-FFSGLEMLINSRVSLSDISRGFP 550

Query: 530 S---------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           +          +  R++IE SYA    RQ  +  E++  E   +P D DY+ L  L  E 
Sbjct: 551 AEFRDIVEDDYLCNRIEIEGSYANAIERQNKDVSELRRLEYLALPDDLDYTRLGFLDEEE 610

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           KEKLS + P  L  AS+I+G++ ++L  LL ++KK
Sbjct: 611 KEKLSTVAPRTLGSASRIDGISASSLVQLLKFVKK 645


>gi|219670949|ref|YP_002461384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfitobacterium hafniense DCB-2]
 gi|254811508|sp|B8G0L2|MNMG_DESHD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219541209|gb|ACL22948.1| glucose inhibited division protein A [Desulfitobacterium hafniense
           DCB-2]
          Length = 637

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/626 (43%), Positives = 380/626 (60%), Gaps = 20/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T LIT     I  M CNP++GG  KGHLVREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAALAAARMGGRTLLITLSLDNIAHMDCNPSLGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   +Q R+LN  KGPAV   R Q+D++ Y L M+  IL QENL + Q  V
Sbjct: 67  LGGQMGITADETSLQVRMLNTGKGPAVHALRIQSDKQAYHLHMRNAILGQENLVLHQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S +V +  +      V+LT+GT+LRG I IG      G  G   + +L  
Sbjct: 127 ERIKTEDGKVSGVVTRTGAFYAAPNVILTSGTYLRGRIIIGDTMYEGGPNGQQTAMNLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM------TDKITNRQI 238
           +  +   + GR KTGTP R+  +++ + K   Q  D     +SFM        +  ++QI
Sbjct: 187 ALKELGLELGRFKTGTPPRIHRRSVDYTKFTVQPGDSVPWRYSFMPTQSMFWGRDVDKQI 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  T  ETH+II +NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 247 PCWLGYTTPETHQIIQDNIHRAPLYSGKIEGIGPRYCPSIEDKVVRFADRPTHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N+D +Y  G+ST++PEEIQ+  I +IPGLEK  ++RPGYAIEYDY+ P +L  +LE +
Sbjct: 307 GWNSDELYMAGLSTSMPEEIQYDIIHSIPGLEKAELLRPGYAIEYDYVKPYQLSLSLEVR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF AGQ+NGT+GYEEAAAQGL+AGIN+A +    +     R++ Y+GV+IDDL +K
Sbjct: 367 KIPGLFTAGQLNGTSGYEEAAAQGLLAGINAALRVQGKEPFIVRRSEGYLGVLIDDLVNK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK---YIQEYNFL- 474
           GV EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K    I E N L 
Sbjct: 427 GVKEPYRLLTSRAEYRLILRQDNADLRLTPRGREIGLVKDERWAAFQKKKAAIAEINALW 486

Query: 475 -----RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
                  L + L      + S  +     G+     E +  P+ +I  +  + P   ++ 
Sbjct: 487 RGTTFSPLNEHLAEVLAGVHSAPVHGGISGE-----ELMRRPEITINEIKQLIPQLAEYD 541

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              +    IE  YA Y  +Q+ E +     E+R+IP++  Y  +  LS E +++L  + P
Sbjct: 542 EEALLEAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAP 601

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            N+ QA++I G+TPA +++LL+Y+++
Sbjct: 602 ANMGQATRITGVTPADISVLLVYLEQ 627


>gi|291165908|gb|EFE27955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Filifactor alocis ATCC 35896]
          Length = 629

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/617 (43%), Positives = 381/617 (61%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A+LG  T ++T     IG M CNPAIGG GK  LV+EIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALASARLGKKTLMVTLSLDAIGHMPCNPAIGGTGKSQLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D + IQ R LN  KGPAV+  R QAD+ LY   M++ +   ENLD++  EV
Sbjct: 67  LGGEMGQNIDKSFIQSRTLNSSKGPAVQSVRAQADKNLYHREMKKVLEGVENLDIVMDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S +  + N      TV+L+TG FL G + +G++  P+G +G  P+  L  
Sbjct: 127 TSLIHDGKSVSGVRTKLNCEYFGKTVILSTGVFLNGRVFMGEVNFPSGPLGQIPAEQLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  + +    R KTGTPAR+   +I + K + Q  D  + PFSFM D +    ++ C +T
Sbjct: 187 SLKELNLPLRRFKTGTPARVHADSIDFSKMQLQEGDAEIEPFSFMNDYLPEGNKVVCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II EN++ SA+Y G I S GPRYCPSIEDK+VRF ++  HQ F+EPEGL+T 
Sbjct: 247 RTTQKTHDIIRENLQRSAMYGGFIDSKGPRYCPSIEDKVVRFSDKESHQFFVEPEGLDTK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G S+++  E+Q +   T+ GLE  +++RP YAIEYD I+P  L P+LE   +  L
Sbjct: 307 EYYIQGFSSSMAYEVQLEMYHTVLGLEHCHMMRPAYAIEYDCIDPLRLKPSLEIMGVENL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAAAQGL+AGIN++RK + L+ I   R  +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQFNGTSGYEEAAAQGLMAGINASRKIDGLEPIILDRATAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT +G K+G +   R +RF    ++     + LK   +
Sbjct: 427 YRMMTSRAEYRLLLRQDNADLRLTELGYKIGLVKPERYERFLAKKEQIAEEINRLKKEKI 486

Query: 484 TSKNLSSTSISFKQDGKTRT--AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++       +   TRT   YE L  P+ +   L S+          V ++ +I + 
Sbjct: 487 KPEEINPLLEKMGKAPFTRTISLYEALKRPEITYPLLASLGKTHESLPVQVQKQAEITAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  EKR +P+  DYS +  L  E ++KL+ ++PFN+ QAS+I G+
Sbjct: 547 YEGYIKKQIEQVESFRKLEKRQLPESMDYSLIEGLRLEARQKLNEIRPFNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLIY+K+ + 
Sbjct: 607 SPADISVLLIYMKQQSA 623


>gi|260808243|ref|XP_002598917.1| hypothetical protein BRAFLDRAFT_79848 [Branchiostoma floridae]
 gi|229284192|gb|EEN54929.1| hypothetical protein BRAFLDRAFT_79848 [Branchiostoma floridae]
          Length = 648

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 295/625 (47%), Positives = 398/625 (63%), Gaps = 44/625 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAAA AA++GA+T L+THK  TIG MSCNP+ GG+GKGHL++EIDAL
Sbjct: 35  YDVIVVGGGHAGTEAAAAAARMGANTLLVTHKLDTIGEMSCNPSFGGVGKGHLMKEIDAL 94

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ----------- 114
           DG+  R+ D +GIQ++VLN +KGPAV GPR Q DR LY+  +Q E+ S            
Sbjct: 95  DGVCARICDKSGIQYKVLNTRKGPAVWGPRAQIDRSLYKKHLQDELFSDTPNLTFLARPV 154

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           E+L +        +  K ++  + + D   I   TVVLTTGTFLRG I+IG    PAGR+
Sbjct: 155 EDLILTPNSQPDSDVCKQLVRGVRLDDGQCIHGDTVVLTTGTFLRGQINIGLETRPAGRV 214

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           GD+P+  L  S     F  GRLKTGTP R+DG+TI +     Q  D+   PFSF+ D + 
Sbjct: 215 GDAPAIGLARSLEDAGFTVGRLKTGTPPRVDGRTIDYTHLSPQPGDDPPQPFSFLNDAVW 274

Query: 235 NR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +   Q+ C +T TN    +II++N+ H   +  + ++ GPRYCPSIE K++RF +R  H
Sbjct: 275 IKPEDQVLCHLTHTNSTVDKIILDNL-HLDRHVLE-ETTGPRYCPSIESKVLRFPKRP-H 331

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QI+LEPEGL+T VVYPNGIS  LP E+Q   +R I GLE+  +IRPGY +EYDY++P++L
Sbjct: 332 QIWLEPEGLDTPVVYPNGISCTLPAEVQVDMVRQIRGLERAEVIRPGYGVEYDYMDPRQL 391

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             +LET +I  LF AGQINGTTGYEEAAAQG++AGIN+  K         SRT+ YIGV+
Sbjct: 392 KASLETHRIKNLFFAGQINGTTGYEEAAAQGIIAGINAVLKVQNRPAFTVSRTEGYIGVL 451

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDLT++G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + GC+   R  RF       
Sbjct: 452 IDDLTTQGTNEPYRMFTSRAEFRLSLRPDNADERLTEKGHQAGCVSHYRYHRF------M 505

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--S 529
           +   SL  SL L +                  A++ L YPD +I  L  + P+ R    +
Sbjct: 506 DIKHSLDSSLQLLN------------------AFDLLKYPDMTIARLGDVVPELRHLVPN 547

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +  RLQIE+ Y+    +Q  E +E++ +E   +P + D++ L  +S E+ EKL++ +P
Sbjct: 548 RQLCNRLQIEAMYSCMLKKQEQEIQEVRRDEAMTLPDNLDFTRL-RVSTEVIEKLALTRP 606

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             +  AS+I G+TPAA+  LL Y+K
Sbjct: 607 QTIGAASRIPGITPAAMVQLLRYVK 631


>gi|86605018|ref|YP_473781.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. JA-3-3Ab]
 gi|123507844|sp|Q2JXG8|MNMG_SYNJA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86553560|gb|ABC98518.1| glucose-inhibited division protein A [Synechococcus sp. JA-3-3Ab]
          Length = 643

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/618 (44%), Positives = 378/618 (61%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  AA+LG +T ++T     I    CNPA+GG  K  LV EIDAL
Sbjct: 15  YDVIVVGGGHAGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +G V 
Sbjct: 75  GGEMGKVTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLSIREGTVT 134

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +N  +  +V    S+  C  V+LTTGTFL G I IG+   PAGR G+     L +
Sbjct: 135 DLVLGRNDEVVGVVTHFGSVFGCGAVILTTGTFLGGRIWIGRHWQPAGRAGEFAVEGLTD 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +  +  F+TGRLKTGTPAR+D +++ +   E+Q  D  L  FSF  +    R Q++C +T
Sbjct: 195 TLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDLRWFSFDPEVWVPREQMDCYLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETHRII EN+  + +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG +  
Sbjct: 255 RTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST +PE+IQ Q +R++PGLE+  ++RP YA+EYDY+   +L+PTL TKK+ GL
Sbjct: 315 ELYIQGFSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL +K + EP
Sbjct: 375 FCAGQINGTTGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIGTLIDDLCTKELREP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-------QKRFAKYIQEYNFLRS 476
           YRM TSR+EYR+ LR DNAD RLTP+G + G I +RR       Q R A  I+     R 
Sbjct: 435 YRMLTSRSEYRLILRADNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQR- 493

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +K+      +LS   ++ +    + T  E L        +L  +     +      E  
Sbjct: 494 -VKAHDPAGIHLS--QLTGQGIKGSATLAELLRRNPIHYADLLELGLGNEELDPFEQEAA 550

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y+ Y  RQ  + +++  +  R +P D DY S+P LS E +EKL+ ++P  + QA+
Sbjct: 551 EIAVKYSGYIQRQQAQIEQVSKQYHRPLPPDLDYHSIPTLSKESREKLAAVRPLTVGQAA 610

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ PA +N LLIY++
Sbjct: 611 RIGGVNPADINALLIYLE 628


>gi|46580238|ref|YP_011046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|81170537|sp|Q72B11|MNMG_DESVH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46449655|gb|AAS96305.1| glucose inhibited division protein A [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233776|gb|ADP86630.1| glucose inhibited division protein A [Desulfovibrio vulgaris RCH1]
          Length = 629

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/621 (44%), Positives = 369/621 (59%), Gaps = 19/621 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IV+G GHAGCEAA   A++G +T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 13  YDCIVVGAGHAGCEAAMALARMGHATLLLTGNADRIGHLSCNPAIGGLAKGHMVKEIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y   ++R+I +Q NL V Q    
Sbjct: 73  GGMMGLWADEAGIQFRTLNSSKGPAVRATRAQIDRDAYLRVVRRDIFAQPNLRVWQDMAE 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +        R   V+LTTGTFL+G IH+G    P GR+GD+P+  L  S
Sbjct: 133 SIIVEEGRAAGVRTAYGQEFRAHHVLLTTGTFLQGRIHVGLSNFPGGRLGDAPATGLSAS 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E Q  D+   PFSF    +   Q+ C +T T
Sbjct: 193 LRAIGLELGRLKTGTTPRLLRDSIDFSMMEVQPPDDPPRPFSFRGPGVRLPQLPCHVTWT 252

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G IK  G RYCPSIEDK+ RF E+  HQ+F+EPEGL +   
Sbjct: 253 NERTHEAIRAGFDRSPMFTGVIKGTGARYCPSIEDKVARFPEKERHQVFVEPEGLESPEC 312

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP E+Q   I TIPGLE   I+RPGYAIEYDY +P +L  TLETK + GL+L
Sbjct: 313 YPNGIPTSLPLEVQKAMIATIPGLENAQIVRPGYAIEYDYADPVQLRSTLETKALRGLWL 372

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N +     +      R  +Y+ V++DDL +KG  EPYR
Sbjct: 373 AGQINGTSGYEEAAAQGLWAALNVSCTLRSMPPFLPGRDTAYMAVLVDDLVTKGTREPYR 432

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD RLT  G  LG + +        + Q ++  R+ L SL+   
Sbjct: 433 MFTSRAEHRLLLRENNADARLTETGRALGLVDD-------THWQLFSTKRAALHSLLDEL 485

Query: 486 KNLSSTSISFKQDGKTR----------TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +N   T  +  +D  +R          +  + L  P  ++ +L        +F+  V E 
Sbjct: 486 ENRRITPDAAARDIFSRLGEPAPTKGVSLADILRRPSLTLPDLAPFWEGVTRFADDVREE 545

Query: 536 LQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            +    Y+ Y  RQ  + A+  + E+  ++P+D DY+ +P L+ E+ EKL  ++P  L Q
Sbjct: 546 AETIVKYSGYLARQQELVARSARMEDT-VLPEDMDYTVIPGLTREIVEKLGKVRPHTLGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A++I G+TPAAL  L I ++K
Sbjct: 605 AARISGVTPAALTCLEIQLRK 625


>gi|304405895|ref|ZP_07387553.1| glucose inhibited division protein A [Paenibacillus curdlanolyticus
           YK9]
 gi|304345138|gb|EFM10974.1| glucose inhibited division protein A [Paenibacillus curdlanolyticus
           YK9]
          Length = 632

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 383/619 (61%), Gaps = 9/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KGH+VRE
Sbjct: 4   VGGSYDVIVVGAGHAGSEAALAAARMGCETLLLTINLDMVAFMPCNPSIGGPAKGHVVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M++ I   ++L + Q
Sbjct: 64  IDALGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFDYQHMMKKTIEETDHLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E      ++ +  +  R   VV+TTGT++RG + +G+L   +G     PS  
Sbjct: 124 GMVDELIVEDGHCVGVITKTGAEYRAKAVVITTGTYMRGKVIMGELMYESGPNNQQPSIK 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L        F   R KTGTP R+ G TI + KTE Q  DE+   FS+ T+   N Q+ C 
Sbjct: 184 LSQCLKDLGFQLARFKTGTPPRVHGDTIDFSKTEIQPGDEKPKFFSYETESSNNEQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+  TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG N
Sbjct: 244 LTYTSETTHQIINDNLHRAPMFSGAIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G+ST++PE++Q   +R+IPGLE V ++R GYAIEYD + P +L+P+LETK I 
Sbjct: 304 TSEYYVQGLSTSMPEDVQLGILRSIPGLENVEMMRTGYAIEYDAVVPTQLWPSLETKLIE 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEA  QG+VAGIN+ARK+   + +   R+  YIGVMIDDL +KG  
Sbjct: 364 GLFTAGQINGTSGYEEAGGQGIVAGINAARKAQGKEPVIIERSQGYIGVMIDDLVTKGTS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLTP+G ++G I    Q+R+ +Y+ +   +   ++ L
Sbjct: 424 EPYRLLTSRAEYRLLLRHDNADLRLTPLGYEIGLI---TQERYDRYLNKKELVEQEIERL 480

Query: 482 VLTSKNL-SSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             T   +  S      + G        +A   L  P+ +  ++  + P   + +  + E+
Sbjct: 481 KTTKIRMEESVQALLAEIGSAPLTGGCSALSLLLRPEVTYAHIEKLVPAPYELTEEMKEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y+ Y  +Q+ + + +   EK+ IP D DY  +  L+NE K  LS ++P ++ QA
Sbjct: 541 AEIQVKYSGYIEKQLHQVERMGKMEKKRIPDDIDYFDVHGLANEAKTNLSQIRPLSIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+TPA +++LL+Y++
Sbjct: 601 SRIAGVTPADISILLVYLE 619


>gi|283850202|ref|ZP_06367491.1| glucose inhibited division protein A [Desulfovibrio sp. FW1012B]
 gi|283574228|gb|EFC22199.1| glucose inhibited division protein A [Desulfovibrio sp. FW1012B]
          Length = 618

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/619 (45%), Positives = 374/619 (60%), Gaps = 13/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+I++G GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VREIDAL
Sbjct: 3   FDLIIVGAGHAGCEAAMAAARLGLGTLLLTQNVDRIGHLSCNPAIGGLAKGHMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADAAGIQFR LN +KGPAVR  R Q DR+ Y   ++R+I +QE L V Q  V 
Sbjct: 63  GGMMGLWADAAGIQFRTLNTRKGPAVRATRAQIDRDAYLRVVRRDIFAQEGLLVRQDTVE 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    S +            V+LTTGTFL G+IHIG  ++  GR+GD PS+ L  S
Sbjct: 123 AIVAEDGRASGVRTGSGETFAARAVLLTTGTFLGGLIHIGLTQLRGGRLGDPPSDGLSAS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGT  RL  K+I +  T  Q  D     FSF       RQ+ C +T T
Sbjct: 183 LREHGLILGRLKTGTTPRLLAKSIDFAATTPQPGDHPPPAFSFHGPGPVLRQVPCHLTYT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL++  +
Sbjct: 243 NERTHEAIRAGFDRSPLFTGVIEGTGARYCPSVEDKVARFPERDRHHVFLEPEGLDSPEI 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP E+Q   I TIPGLE+ +I+RPGYAIEYDY +P +L PTLETK + GLFL
Sbjct: 303 YPNGISTSLPIEVQKALIATIPGLEQAHIVRPGYAIEYDYADPVQLLPTLETKALPGLFL 362

Query: 366 AGQINGTTGYEEAAAQGLVAGIN--SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           AGQINGT+GYEEAAAQGL A +N   ARK          R  +Y+ V++DDL +KG  EP
Sbjct: 363 AGQINGTSGYEEAAAQGLWAALNIFCARKGRP--PFLPRRDQAYMAVLVDDLVTKGTTEP 420

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR  NAD RLTP+G +LG +G+R   ++  Y ++   L ++++ L  
Sbjct: 421 YRMFTSRAEHRLLLREGNADARLTPLGRELGLVGDR---QWELYRRKEESLAAVIEGLCG 477

Query: 484 ------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                    + + T++  + + ++    E L  P+ ++ +L    P+       V    +
Sbjct: 478 RRVRPDDCDDAAWTALGGRPEDRSLRLDELLRRPEVTLPDLGRFWPELAALPPEVAVEAE 537

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               Y  Y  RQ   A  +   E  ++P D DY  +  LS E+ EKL  + P  L QA +
Sbjct: 538 TRVKYEGYLRRQGELAGRMGRLEAMVLPPDLDYGLVSGLSREVVEKLGRVAPLTLGQAGR 597

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAAL  L I++KK 
Sbjct: 598 ISGVTPAALACLEIHLKKR 616


>gi|189345565|ref|YP_001942094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium limicola DSM 245]
 gi|189339712|gb|ACD89115.1| glucose inhibited division protein A [Chlorobium limicola DSM 245]
          Length = 621

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/623 (44%), Positives = 382/623 (61%), Gaps = 16/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV GGGHAGCEA   +A++G S  LI+   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGGGHAGCEAVLASARMGLSCLLISSDLTALARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QADR LY   M+R I  + N+D++Q  V 
Sbjct: 62  GGEMGKAIDAEGIQFRMLNRSKGPAMHSPRAQADRLLYSQYMRRVIEKEINIDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G       +S + +   + I    V+L  GTFL G+IHIG      GR + + P   L  
Sbjct: 122 GIKNRSGTVSGVYISTGTFIESRAVILACGTFLNGLIHIGLSHYQGGRTLAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +   F F  GRLKTGTP R+D +++ + K E+Q  D   +PFSF T  + NR Q+ C +T
Sbjct: 182 NLSSFGFRAGRLKTGTPPRIDKRSVDYSKLEEQMGDSLPVPFSFSTHTLANRSQLSCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH I+      S ++SG +K  GPRYCPSIEDKI RF  +  H IFLEPEG +T+
Sbjct: 242 KTTAETHEILRSGFDRSPLFSGKVKGTGPRYCPSIEDKINRFSNKESHHIFLEPEGFDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +++IPGLEKV +IRPGYAIEYDY  P ++  TLETK+I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLLGLKSIPGLEKVKMIRPGYAIEYDYFFPYQIRSTLETKRIDNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAAAQGL+AGIN++ K      +   R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGSSGYEEAAAQGLMAGINASLKLLDKPPLILKRSDAYIGVLIDDLITKETDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK----RFAKYIQEYNFLRSLLK 479
           YRMFTS AE+R+ LR DNAD RL+  G   G + E+       +F+  I++   L S  K
Sbjct: 422 YRMFTSSAEHRLLLRHDNADLRLSSYGYNAGLLDEKSMSDCHIKFSA-IEKVKLLASNFK 480

Query: 480 -SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS------LV 532
              V  +++LS   I+  Q   + +A   L  P  + + L       R+  S      LV
Sbjct: 481 FQPVSINQHLSINGIAEIQ--TSLSALNLLKRPGITFRMLLDGNEYFRESVSEITTDPLV 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  R ++ ++ I   E   IP  F Y  L  LSNE +EKL   +P  +
Sbjct: 539 FEQIEIDIKYEGYLKRDLLMSERIIRLESLQIPHSFQYEMLSGLSNEGREKLIRYRPETI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA++I G++P+ +++L+I + +
Sbjct: 599 GQATRILGVSPSDISVLMIKLGR 621


>gi|254303504|ref|ZP_04970862.1| glucose-inhibited cell division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323696|gb|EDK88946.1| glucose-inhibited cell division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 633

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/630 (44%), Positives = 382/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGKKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFS-FMTDK--ITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D+ +++ FS   TDK  ++ 
Sbjct: 182 EDLPLSLEKVGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDKSQVLKFSNRTTDKEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II  + + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIKNSKERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + I+ + G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIKNLQGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTIDNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ IG +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKIGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N        K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILTKTSVGPSNPRVNETLLKRGENPIKDGS--TLLELLRRPEVTFKDIEYISEEIKGVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|164686453|ref|ZP_02210481.1| hypothetical protein CLOBAR_00018 [Clostridium bartlettii DSM
           16795]
 gi|164604464|gb|EDQ97929.1| hypothetical protein CLOBAR_00018 [Clostridium bartlettii DSM
           16795]
          Length = 631

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 385/619 (62%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++G  T ++T    +IG M CNP+IGG GKG LV+EIDA
Sbjct: 8   NYDVIVVGAGHAGCEAALASARMGCKTLMVTLTLDSIGMMPCNPSIGGTGKGQLVKEIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ + ++ NL+++  EV
Sbjct: 68  LGGEMGVNTDKTFIQSRMLNTAKGPAVHSLRAQADKFKYHTEMKKTLENEPNLEIVMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +  +I  ++ +         VVL TG +L  +I+IG++ +  G  G   +  L +
Sbjct: 128 VDLINDGKVIKGVITRMGCKYHSKAVVLATGVYLNSLIYIGEVTLNEGPNGLGYAEKLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +    D  R KTGTPAR+   +I + +   Q  DE++ PFSFM+D +   Q+ C + R
Sbjct: 188 KLVDLGLDMRRFKTGTPARIHRDSIDFSQMVIQEGDEKITPFSFMSDDLKIDQVPCYLAR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TNL+TH++IM+NI  SA+Y G I S GPRYCPSIEDK+VRF ++  HQ F+EPEGL+T  
Sbjct: 248 TNLDTHKVIMDNINRSAMYGGKIHSTGPRYCPSIEDKVVRFNDKESHQTFIEPEGLDTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIST+LP E+Q Q  R++ GLE   I+RP YAIEYD +NP +L  +LE K    LF
Sbjct: 308 MYIQGISTSLPYEVQIQMYRSMKGLENCKIMRPAYAIEYDCLNPTQLKASLEIKVTENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ARK    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLMAGINAARKIQGKEPFILDRSEAYIGVLIDDLITKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLV 482
           RM TSRAEYR+ LR DNAD RLT  G ++G   + R  RF   K + E    R  LK+  
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTEKGYEIGLASQERYDRFLTKKALVEAELER--LKTER 485

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERL 536
           +T K ++   +   + G +      + Y+FL  P+ + + L  I   A  +    V E+ 
Sbjct: 486 VTPKEVNELLV---EKGASEIKVGLSLYDFLKRPEVTYELLEQIGKAASEEVPYDVKEQC 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I S Y  Y  +Q+ +  + K  E + + +D DYS++  L  E ++KL+ +KP ++ QAS
Sbjct: 543 VIMSKYEGYIDKQLKQIDQFKKLENKKLSEDIDYSTIEGLRIEARQKLNDIKPISIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 603 RISGVSPADISVLLIYLEQ 621


>gi|311244465|ref|XP_003121457.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Sus scrofa]
          Length = 691

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/630 (46%), Positives = 409/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRNLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                      T K  +  +V+ D + +   +VVLTTGTFLRGVI IG    PAGR+GD 
Sbjct: 157 DLILTEPEPERTGKYRVCGVVLVDGNTVYADSVVLTTGTFLRGVIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D   IPFSFM + +  + 
Sbjct: 217 PSVGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKQTPDNPSIPFSFMNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++EN+ H   +  +  + GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCHLTHTNPRVDEIVLENL-HLNCHVKET-TRGPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +         SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGIMAGINASLRVRCKPPFVISRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSRAE+R+SLRPDNADNRLT  G K  GC+ ++R +R +        
Sbjct: 454 LTTLGTNEPYRMFTSRAEFRLSLRPDNADNRLTFRGYKEAGCVSQQRYERASWMKSSLEE 513

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S   KNL    SIS  +    R A + L Y +  +++L    P+  +K+
Sbjct: 514 GISVLKSIEFSSSKWKNLIPEASISIGKSVPLR-ALDVLKYEEVDMKSLAKAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           S    + ERL+IE++Y A    Q  E KE++ +E   +P+D DY +L   +LS E++EKL
Sbjct: 573 SKCRELAERLKIEATYEAVLFHQQQEMKEVQRDEALRLPEDLDYLTLRDVSLSYEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVK 662


>gi|308175808|ref|YP_003922513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens DSM 7]
 gi|307608672|emb|CBI45043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555784|gb|AEB26276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus amyloliquefaciens TA208]
 gi|328914173|gb|AEB65769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens LL3]
          Length = 628

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 379/618 (61%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +    NL ++QG   
Sbjct: 68  GGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKHTLEKTPNLTLLQGIAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q  +  +  TVVLTTGT+LRG I +G L   +G     PS  L   
Sbjct: 128 RLIIEDGECRGVITQTGAEYKAKTVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   +I + KTE Q  D     FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVSSDSIDYSKTEIQPGDPVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+ 
Sbjct: 308 YVQGLSTSLPEDVQQRMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIPNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG ++G I + R + F K        +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYEAFEKKKAAIEAEKKRLWSVIIKP 487

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+ 
Sbjct: 488 SPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPADSPVPQDVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|253681320|ref|ZP_04862118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum D str. 1873]
 gi|253562558|gb|EES92009.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum D str. 1873]
          Length = 630

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/618 (42%), Positives = 391/618 (63%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV VIG GHAGCEAA  +A+LG +T +     +++  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVAVIGAGHAGCEAALASARLGINTIVFATDLASVAMMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  + + ENL + Q E+ 
Sbjct: 68  GGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKKKYSERMKHVLETTENLHLKQAEII 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  S
Sbjct: 128 KVDIENGKVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ +++ + K  +Q  D+ ++PFSFM++ I   QI C +T +
Sbjct: 188 LIDSGIKLTRFKTGTPARINRRSVDFSKMIEQKGDDNIVPFSFMSENIDRDQISCYLTYS 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ +
Sbjct: 248 GDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K+I GLF 
Sbjct: 308 YVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKEIDGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA  QGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQMNGSSGYEEAGCQGLIAGINAALKLKGEKPLILKRSDAYIGVLIDDLVTKGTQEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + + R  +F K   +       LK++ +T+
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTEMGRKIGLVKDERYSKFTKRKADIEKEIERLKNIQITN 487

Query: 486 K--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           K        N++S+++      K  + YE +  P+ +   +  +  +  K S  V E++ 
Sbjct: 488 KQEVNKFLENINSSALK-----KPISLYELIKRPELNYFIVEELDENRPKLSKDVQEQVN 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ + ++ K  E RLIPK+FDY+ +  L  E  +KL  +KP ++ QAS+
Sbjct: 543 IISKYEGYIQKQLEQVEQFKKLENRLIPKEFDYTEVKGLRKEAIQKLDKIKPVSIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLI +++
Sbjct: 603 ISGVSPADISVLLIVLEQ 620


>gi|24658174|ref|NP_611677.1| CG4610 [Drosophila melanogaster]
 gi|7291427|gb|AAF46854.1| CG4610 [Drosophila melanogaster]
 gi|21429996|gb|AAM50676.1| GH24245p [Drosophila melanogaster]
 gi|220950036|gb|ACL87561.1| CG4610-PA [synthetic construct]
          Length = 661

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/631 (43%), Positives = 414/631 (65%), Gaps = 27/631 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                   +T+    + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNR 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHEGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIESKILRFGAKV-HQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSSLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHSDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F    Q    L
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQ---QTEARL 504

Query: 475 RSLLKSLVLTSKNL----SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF 528
           +S ++SL    K+      + ++   +    ++A++ L  P  + +I+ L  + P+   +
Sbjct: 505 QSAIESLRRLRKHTHYWRQALNLPKAKASVEKSAFDMLGIPADNITIEQLIHLHPNELSW 564

Query: 529 ---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKL 584
                 + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL
Sbjct: 565 LKGERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKL 624

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++++P  +  AS+I+G+TP+ +  +L Y+KK
Sbjct: 625 TLIQPQTIAAASRIQGVTPSTIVRILKYVKK 655


>gi|312279314|gb|ADQ63971.1| Putative tRNA(5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus thermophilus ND03]
          Length = 633

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/622 (44%), Positives = 384/622 (61%), Gaps = 16/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREIDAL
Sbjct: 9   YDIIVIGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q  V 
Sbjct: 69  GGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQSMVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +    N       VV+TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVTLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG  T+
Sbjct: 249 YTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGRETE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK ISGL
Sbjct: 309 EVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKLISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG LEP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL------ 477
           YR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F   I++  F R L      
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFK--IKKNQFDRELTRLSKE 486

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVIE 534
            LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + VIE
Sbjct: 487 KLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  + Q
Sbjct: 544 LLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPETIGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+ PA +++L++Y++ N
Sbjct: 604 ASRISGVNPADISILMVYLEGN 625


>gi|331092105|ref|ZP_08340936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402306|gb|EGG81877.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 632

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/625 (43%), Positives = 383/625 (61%), Gaps = 25/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEA    A+LG  T + T   +++  M CNP IGG  KGHLVREIDAL
Sbjct: 15  YDVVVIGAGHAGCEAGLATARLGLKTIVFTVSINSVALMPCNPNIGGTSKGHLVREIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL++ Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKAQYSKTMRCVLENQENLELKQAEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +     ++  C  V+L TGT+L+     G++    G  G   +N L +S
Sbjct: 135 DILVEDGKITGVQTYSGAVYHCKAVILCTGTYLKSRCIYGEISNETGPDGLQAANYLTDS 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   +  R KTGTPAR+D  +I + K E+QF DER++PFSF T  + +   Q  C +T
Sbjct: 195 LKRLGIEMYRFKTGTPARIDKNSIDFSKMEEQFGDERVVPFSFTTNPEDVQIEQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL+T+
Sbjct: 255 YTNEKTHEIIRQNLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGLDTN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  R++PGLE   I+R  YAIEYD I+ ++L+PTLE KKI GL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRSVPGLENARIMRNAYAIEYDCIDARQLYPTLEFKKIEGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +  GQ NG++GYEEAAAQGL+AGIN+A K    + I   R++ YIGV+IDDL +K   EP
Sbjct: 375 YSGGQFNGSSGYEEAAAQGLIAGINAALKLLGREQIVIDRSEGYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG K+G I   R          Y+ L+   + +  
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTEIGYKVGLISNDR----------YSHLKEKERQIEQ 484

Query: 484 TSKNLSSTSIS--------FKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSS 530
             + +  T+I          ++ G T      T  E +  P+ + + L  I     K S 
Sbjct: 485 EVERVKHTNIGANGKVQEVLEKYGSTPLNSGTTLAELIRRPELNYEALAPIDVKREKLSD 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            VIE++ I   Y  Y  RQM + ++ K  E + IP + DY  + +L  E  +KL   +P 
Sbjct: 545 EVIEQVNISIKYEGYITRQMKQVEQFKKLETKRIPDEIDYDDVKSLRIEAVQKLKQYRPI 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++ QAS+I G++PA +++LL+Y+++
Sbjct: 605 SIGQASRISGVSPADISVLLVYMEQ 629


>gi|258512902|ref|YP_003186336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479628|gb|ACV59947.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 628

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/615 (44%), Positives = 383/615 (62%), Gaps = 9/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  AA++G  T L+T    TI  M CNP+IGG  KG +VRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAALAAARMGCKTLLLTINLDTIAYMPCNPSIGGPAKGIVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV+  R QAD+  Y L M+  +   ENL + QG V
Sbjct: 67  LGGQMGKNTDATYIQMRMLNTGKGPAVQALRAQADKAYYALNMKWTLERTENLHLKQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  +V +         VVLTTGT+LRG I+IG++   +G  G  P+  L +
Sbjct: 127 EELLVRNGRIYGVVTKSGQEFHAQAVVLTTGTYLRGRIYIGEVSYESGPNGQMPAIRLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +   F   R KTGTP R++  +I + K   Q  D     FSF  D     Q+ C +T 
Sbjct: 187 CLVDLGFRLVRFKTGTPPRINKNSIDFSKLIAQPGDPVPRHFSFDPDTPVRDQVPCWLTG 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII+EN+  S +YSG+IK  GPRYCPSIEDK+VRF +R+ HQIFLEPEG +T  
Sbjct: 247 TTEETHRIILENLHRSPLYSGEIKGTGPRYCPSIEDKVVRFHDRDTHQIFLEPEGPHTCE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q + + +IPGLE+  ++RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 307 WYVQGLSTSLPEDVQLKILHSIPGLERAEMLRPGYAIEYDAVVPTQLWPTLETKLVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAA QG++AGIN+ARK    + +  SR+D+YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQLNGTSGYEEAAGQGIMAGINAARKVKGEEPVVLSRSDAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT +G ++G + ER    +++ +++   +++ L  L   
Sbjct: 427 RLLTSRAEHRLLLRHDNADLRLTELGYRIGLVSER---AYSRVMRKKEGIQAELARLSRV 483

Query: 485 SKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQI 538
                  +    + G        +  + L  P+ S   + +I P    +    V E+++I
Sbjct: 484 KVKPQEVNGRLAEWGSQPIESGMSLAQLLKRPELSYDQIRTIDPTGGVEIDPEVREQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  +Q    +  K  E R +P++ DY  +  L+ E +EKLS ++P  + QA++I
Sbjct: 544 EIKYAGYIRKQNELIERQKRLEGRKLPENLDYMQIKGLAMEAREKLSRVRPRTVGQAARI 603

Query: 599 EGMTPAALNLLLIYI 613
            G+TPA +++LL+Y+
Sbjct: 604 PGVTPADISILLVYL 618


>gi|224370296|ref|YP_002604460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfobacterium autotrophicum HRM2]
 gi|223693013|gb|ACN16296.1| GidA [Desulfobacterium autotrophicum HRM2]
          Length = 627

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/621 (45%), Positives = 384/621 (61%), Gaps = 17/621 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            ++YDVIV+G GHAGCEAA  AA +G  T L       I +M C+P+IGG+ KG LV+EI
Sbjct: 5   TKNYDVIVVGAGHAGCEAAIAAANMGCRTLLAAIDLDKIAAMPCSPSIGGMAKGQLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +V+DA+ IQ+R LN +KGPAV   RTQ D+ LY+  M++ + +  NLD  Q 
Sbjct: 65  DALGGKMAKVSDASAIQYRTLNTRKGPAVHSTRTQNDKRLYQATMKKIVETTLNLDFKQM 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  I  +       S VVL TGTFL+G++HIG  KI AGR G+  S  L
Sbjct: 125 MVDQLVIENHRVIGIREETGFGYHGSAVVLATGTFLKGMVHIGTTKIHAGRAGEFSSIGL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +  F   R+KTGTP RL   TI + +  +Q +D    PFSF T  +    +   I
Sbjct: 185 AASLEREGFLLERMKTGTPPRLALSTIDFSEFSRQDSDPDPTPFSFSTTTVKGGMLPSFI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  TH ++ +N+KHSA+Y G I     RYCPS EDKIV+F +R+ HQI LE EG ++
Sbjct: 245 GHTNTHTHDLVRQNLKHSALYGGSIIGKSARYCPSFEDKIVKFPDRDQHQIILEHEGTDS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y +G+  +LP EIQ + +R++ GLE+  I+RP YAIEYDYINP+EL PTLETK+I+G
Sbjct: 305 QEIYASGLGNSLPVEIQLEVVRSVKGLEQAEIMRPAYAIEYDYINPQELNPTLETKRING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAAAQGL AGIN+A    + +     R+++Y+GVMIDDL ++G  E
Sbjct: 365 LFFAGQINGTSGYEEAAAQGLWAGINAACMVKEQEPFLLDRSEAYMGVMIDDLVTRGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----------ERRQKRFAKYIQEYN 472
           PYRMFTSRAEYR+ LR DNAD RL   G +LG +            R  K+    IQ + 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLAEKGHELGLVDGQALAAAREISRGTKKEMARIQSHV 484

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              +   +  L     +  +   K D   + A       D+S  ++F+  P      S +
Sbjct: 485 VKPTPETNAWLNRAGSTPITTGLKLDQLLKRA-----GIDYSAVDVFAPSPST--IPSRI 537

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            ++++IE+ Y  Y  RQ+ E K+ K  E+  IPKD ++ ++  LSNEL+EKL+ +KP +L
Sbjct: 538 KKQVEIETKYEGYIARQLNEIKKFKDMERIKIPKDIEFKAIHGLSNELREKLTSVKPLSL 597

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I+GMTPAAL+++LI I
Sbjct: 598 GQASRIDGMTPAALSVILIAI 618


>gi|218291087|ref|ZP_03495110.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238972|gb|EED06179.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 628

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/612 (44%), Positives = 380/612 (62%), Gaps = 3/612 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  AA++G  T L+T    TI  M CNP+IGG  KG +VRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAALAAARMGCRTLLLTINLDTIAYMPCNPSIGGPAKGIVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV+  R QAD+  Y L M+  +   ENL + QG V
Sbjct: 67  LGGQMGKNTDATYIQMRMLNTGKGPAVQALRAQADKAYYALNMKWTLERTENLHLKQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  +V +         VVLTTGT+LRG I+IG++   +G  G  P+  L +
Sbjct: 127 EELLVRNGRIYGVVTKSGQEFHAQAVVLTTGTYLRGRIYIGEVSYESGPNGQMPAIRLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +   F   R KTGTP R++  +I + K   Q  D     FSF  D     Q+ C +T 
Sbjct: 187 CLVDLGFRLVRFKTGTPPRINKNSIDFSKLIAQPGDPVPRHFSFDPDTPVRDQVPCWLTG 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII+EN+  S +YSG+IK  GPRYCPSIEDK+VRF +R+ HQIFLEPEG +T  
Sbjct: 247 TTEETHRIILENLDRSPLYSGEIKGTGPRYCPSIEDKVVRFRDRDTHQIFLEPEGPHTCE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q + + +IPGLE+  ++RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 307 WYVQGLSTSLPEDVQLKILHSIPGLERAEMLRPGYAIEYDAVVPTQLWPTLETKLVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAA QG++AGIN+ARK    + +  SR+D+YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQLNGTSGYEEAAGQGIMAGINAARKVKGEEPVVLSRSDAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT +G ++G + ER   R  +  +      + L  + + 
Sbjct: 427 RLLTSRAEHRLLLRHDNADLRLTELGYRIGLVSERAYSRVMRKKEGIQAELARLSRVKVK 486

Query: 485 SKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESS 541
            ++++   +           +  + L  P+ S   +  + P    +    V E+++IE  
Sbjct: 487 PQDVNGRLVELGSQPIESGMSLAQLLKRPELSYDQIRGLDPTGGVEIDPEVQEQVEIEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q    +  K  E R +P++ DY  L  L+ E +EKLS ++P  + QA++I G+
Sbjct: 547 YAGYIRKQNELIERQKRLEGRKLPENLDYMQLKGLAMEAREKLSRIRPRTVGQAARIPGV 606

Query: 602 TPAALNLLLIYI 613
           TPA +++LL+Y+
Sbjct: 607 TPADISILLVYL 618


>gi|210624043|ref|ZP_03294160.1| hypothetical protein CLOHIR_02112 [Clostridium hiranonis DSM 13275]
 gi|210153250|gb|EEA84256.1| hypothetical protein CLOHIR_02112 [Clostridium hiranonis DSM 13275]
          Length = 629

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/616 (43%), Positives = 382/616 (62%), Gaps = 7/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++V+G GHAGCEAA  +A++G  TA+IT    +I +++CNP+IGG GKGHLVREIDA
Sbjct: 8   SYDIVVVGAGHAGCEAALASARMGHKTAMITMSLDSIAALACNPSIGGTGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   RTQAD+  Y   M++ I +QENLD+I  EV
Sbjct: 68  LGGEMGLNIDKTFIQSRMLNTAKGPAVHSLRTQADKFRYHEEMKKTIENQENLDLIMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   ++ ++ +  ++ R    +L TG +L   I IG++    G      +  L +
Sbjct: 128 VEIAHDGQTVTGVITRMGAIYRAKATILATGVYLNSKIFIGEVSFNEGPNALGYAAYLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTP R+   ++ + K ++Q  D +++PFSFM DKI   Q+ C +TR
Sbjct: 188 SLKELGLRMRRFKTGTPCRVHRDSVDFSKMDRQDGDAKIVPFSFMNDKIEREQVPCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I ENIK SA+Y G+I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLNT  
Sbjct: 248 TTAETKQMIEENIKRSAMYGGEIEGVGPRYCPSIEDKIVRFSDKETHQIFIEPEGLNTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP EIQ    +T+ GLE V ++RP YAIEYD I+P +L   LE K +  LF
Sbjct: 308 MYVQGLSTSLPFEIQKDMYKTVLGLENVKVMRPAYAIEYDCIDPTQLKLNLEIKGVENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLIAGINAVRKIEGKEPFTLDRSEAYIGVLLDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLV 482
           RM TSR EYR+ LR DNAD RLT  G ++G + E R +++   K + E  F R  LK + 
Sbjct: 428 RMMTSRCEYRLYLRQDNADMRLTEKGYEIGLVTEERYQKYLAKKEMVEKEFER--LKEVR 485

Query: 483 LTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIE 539
           +T K  N    +  F +     + YEFL  P+     +  +   A       V E+  I 
Sbjct: 486 VTPKESNEVMEAHGFAKLNVGLSLYEFLKRPEVDYALIDELGKGAGDDVPDYVKEQCVIV 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  +Q+ +  + K  E + + +  +YS +  L  E ++KL  +KP ++ QAS+I 
Sbjct: 546 TKYEGYIDKQLKQIDQFKKLESKKLSESINYSEIEGLRLEARQKLDAIKPNSVGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LL+Y+++
Sbjct: 606 GVSPADISVLLVYLEQ 621


>gi|186686455|ref|YP_001869651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nostoc punctiforme PCC 73102]
 gi|186468907|gb|ACC84708.1| glucose inhibited division protein A [Nostoc punctiforme PCC 73102]
          Length = 670

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 377/627 (60%), Gaps = 29/627 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA  +A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 42  AFDVIVVGAGHSGCEAALASARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 101

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G+VAD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL +     
Sbjct: 102 LGGEIGKVADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQENLTI----- 156

Query: 125 AGFNTEKNIISSIVMQDNSMI-----------RCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                 +++++ +V+  N  +           RC  V+LTTGTFL G I +G   +PAGR
Sbjct: 157 -----RESMVTDLVLGANDEVIGVETYFGVGFRCKAVILTTGTFLGGKIWVGNKSMPAGR 211

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            G+  +  L  +  +  F+TGRLKTGTPAR+D +++ + K   Q  DE +  FSF  +  
Sbjct: 212 AGEFAAEGLTQTLNRLGFETGRLKTGTPARVDKRSVDYSKMLIQPGDEDVRWFSFDPEAW 271

Query: 234 TNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             R Q+ C ITRT  ETHR+I +N+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQ
Sbjct: 272 VEREQMPCYITRTTTETHRLIQDNLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQ 331

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IF+EPEG +   +Y  G ST LPE +Q Q +RT+PGLEK  ++RP YA+EYDY+   + +
Sbjct: 332 IFIEPEGRDIPELYIQGFSTGLPENLQLQMLRTLPGLEKCVMLRPAYAVEYDYLPATQCY 391

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTL TKK++GLF AGQINGTTGYEEAAAQGLVAGIN+AR  +  + I F+R  SYIG ++
Sbjct: 392 PTLMTKKVAGLFCAGQINGTTGYEEAAAQGLVAGINAARFVHSQEMIVFAREQSYIGTLV 451

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +K + EPYRM TSR+EYR+ LR DNAD RLT +G ++G I +RR   F +  ++ N
Sbjct: 452 DDLCTKDLREPYRMLTSRSEYRLLLRSDNADQRLTTLGREIGLIDDRRWDLFTQ--KQAN 509

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK 527
            +    +      K      I+   D +       T  + L  P F   +L         
Sbjct: 510 IITEKQRLQATRVKEHDEMGIAIASDTQQAIKGSITLNDLLRRPGFHYVDLDRFGLGNPN 569

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +    E  +I+  Y  Y  RQ  +  +I  +  R +P D DY+++  LS E +EKL+ +
Sbjct: 570 LNRAEKEGAEIDIKYYGYLARQQNQIDQIARQAHRQLPADLDYTTIDTLSKEAREKLTHV 629

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIK 614
           KP  L QA++I G+ PA +N LL+Y++
Sbjct: 630 KPLTLGQAARIGGVNPADVNALLLYLE 656


>gi|89897800|ref|YP_521287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfitobacterium hafniense Y51]
 gi|122480418|sp|Q24M99|MNMG_DESHY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89337248|dbj|BAE86843.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 637

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/626 (43%), Positives = 380/626 (60%), Gaps = 20/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T LIT     I  M CNP++GG  KGHLVREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAALAAARMGGRTLLITLSLDNIAHMDCNPSLGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   +Q R+LN  KGPAV   R Q+D++ Y L M+  IL QENL + Q  V
Sbjct: 67  LGGQMGITADETSLQVRMLNTGKGPAVHALRIQSDKQAYHLHMRNAILGQENLVLHQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S +V +  +      V+LT+GT+LRG I IG      G  G   + +L  
Sbjct: 127 ERIKTEDGKVSGVVTRTGAFYAAPNVILTSGTYLRGRIIIGDAMYEGGPNGQQTAMNLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM------TDKITNRQI 238
           +  +   + GR KTGTP R+  +++ + K   Q  D     +SFM        +  ++QI
Sbjct: 187 ALKELGLELGRFKTGTPPRIHRRSVDYTKFTVQPGDSVPWRYSFMPTQSMFWGRDVDKQI 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  T  ETH+II +NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 247 PCWLGYTTPETHQIIQDNIHRAPLYSGKIEGIGPRYCPSIEDKVVRFADRPTHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N+D +Y  G+ST++PEEIQ+  I +IPGLEK  ++RPGYAIEYDY+ P +L  +LE +
Sbjct: 307 GWNSDELYVAGLSTSMPEEIQYDIIHSIPGLEKAELLRPGYAIEYDYVKPYQLSLSLEVR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I GLF AGQ+NGT+GYEEAAAQGL+AGIN+A +    +     R++ Y+GV+IDDL +K
Sbjct: 367 RIPGLFTAGQLNGTSGYEEAAAQGLLAGINAALRVQGKEPFIVRRSEGYLGVLIDDLVNK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK---YIQEYNFL- 474
           GV EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K    I E N L 
Sbjct: 427 GVKEPYRLLTSRAEYRLILRQDNADLRLTPRGREVGLVKDERWAAFQKKKAAIAEINALW 486

Query: 475 -----RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
                  L + L      + S  +     G+     E +  P+ +I  +  + P   ++ 
Sbjct: 487 RGTTFSPLNEHLAEVLAGVHSAPVHGGISGE-----ELMRRPEITINEIKQLIPQLAEYD 541

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              +    IE  YA Y  +Q+ E +     E+R+IP++  Y  +  LS E +++L  + P
Sbjct: 542 EEALLEAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAP 601

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            N+ QA++I G+TPA +++LL+Y+++
Sbjct: 602 ANMGQATRITGVTPADISVLLVYLEQ 627


>gi|241889411|ref|ZP_04776712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella haemolysans ATCC 10379]
 gi|241863954|gb|EER68335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella haemolysans ATCC 10379]
          Length = 627

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/617 (43%), Positives = 379/617 (61%), Gaps = 7/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  A++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHAASRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  T+++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIEDNKVVGLRTMLGTAYKAKTIIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  D+    FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDDEEHAFSYETKEFVKDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNTSTHEIIDKNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   +R+I GLE   I+R GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVRSIAGLENAVIMRNGYAIEYDAVNPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL-L 478
           YR+ TSRAE+R+ LR DNAD RLT      G + E R   F +       E   L++  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTEERYNIFCEKRSMVADEIERLKTFRI 485

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                T + L+  + +  +DG    A + L  P+ S  N+  +  D       V+E+++I
Sbjct: 486 TPTAATLEKLAELNSAEIRDGI--LAIDMLRRPELSHANVLYLANDKTVLPKDVVEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K   +  IP D +Y  +P+L+ E +EKL  + P  + QAS+I
Sbjct: 544 EVKYEGYIKKSIQQVEKLKKMNEMKIPTDLNYDDVPSLALEAREKLKKVLPLTIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA +++LL+Y+++
Sbjct: 604 SGVNPADISILLVYLEQ 620


>gi|33866912|ref|NP_898471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8102]
 gi|81170585|sp|Q7U3P8|MNMG_SYNPX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33639513|emb|CAE08897.1| glucose inhibited division protein A [Synechococcus sp. WH 8102]
          Length = 641

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/618 (44%), Positives = 379/618 (61%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+AD   IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADGTAIQKRILNASRGPAVWALRAQTDKRLYSHQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            G  T    ++  IS I     S+     V+LT GTFL G I +G   + AGR G+  + 
Sbjct: 130 TGLETTAEADQQRISGIRTYFGSVYGAEAVILTAGTFLGGRIWVGHQSMAAGRAGEQAAE 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q+ 
Sbjct: 190 GLTEALQQLGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADHFFSFDPAAWVSGEQMS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 250 CHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LETK+
Sbjct: 310 RDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLETKR 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYIG MIDDL SK 
Sbjct: 370 VRGLFSAGQLNGTTGYEEAAAQGLVAGVNAARHIGGQEPVHFPREGSYIGTMIDDLVSKD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G  LG I +RR + F   +Q     +  L+
Sbjct: 430 LREPYRVLTSRSEYRLILRGDNADRRLTPLGRDLGLIDDRRWQLFEDKLQAMEREKQRLE 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ L   +  + ++  +     +   T  + L  P     +L             V E  
Sbjct: 490 TVRLKVSDPVAPAVEEETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPLPVREGA 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL  ++P  L QAS
Sbjct: 550 EIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLGSIQPTTLGQAS 609

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++ A +  LL++++
Sbjct: 610 RIPGVSQADITALLMWLE 627


>gi|154688206|ref|YP_001423367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus amyloliquefaciens FZB42]
 gi|166222906|sp|A7ZAW0|MNMG_BACA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154354057|gb|ABS76136.1| GidA [Bacillus amyloliquefaciens FZB42]
          Length = 628

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 378/618 (61%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +    NL ++QG   
Sbjct: 68  GGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKHTLEKTPNLTLLQGIAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++ Q  +  +  TVVLTTGT+LRG I +G L   +G     PS  L   
Sbjct: 128 RLIIEDGECRGVITQTGAEYKAKTVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R+   +I + KTE Q  D     FS+ T +    Q+ C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVSSDSIDYSKTEIQPGDPVPRAFSYETVEYITDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 SPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+ 
Sbjct: 308 YVQGLSTSLPEDVQQRMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIPNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-- 483
           + TSRAEYR+ LR DNAD RLT IG  +G I + R + F K        +  L S+++  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEIGHDIGLISDERYEAFEKKKAAIEAEKKRLWSVIIKP 487

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+ 
Sbjct: 488 SPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPADSPVPQDVAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 606 VNPADISILLVYLEQGRI 623


>gi|154503057|ref|ZP_02040117.1| hypothetical protein RUMGNA_00879 [Ruminococcus gnavus ATCC 29149]
 gi|153796298|gb|EDN78718.1| hypothetical protein RUMGNA_00879 [Ruminococcus gnavus ATCC 29149]
          Length = 635

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/622 (43%), Positives = 387/622 (62%), Gaps = 16/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+++G GHAGCEAA   A++G  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 15  YDVVIVGAGHAGCEAALACARMGFQTLMFTVSVDSIALMPCNPNIGGSSKGHLVKEVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENL++ Q EV 
Sbjct: 75  GGEMGKVIDRTFIQSKMLNSSKGPAVHSLRAQADKANYSKTMRKVLEDQENLEIKQMEVT 134

Query: 126 GFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E     K II+ +     +  RC  VVL TGT+L+     G + +  G  G  P+N
Sbjct: 135 EILAEDGADGKKIITGVRTYSGATYRCRAVVLCTGTYLKARCIYGDVSMQTGPNGLQPAN 194

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
            L +S  +   +  R KTGTPAR+D ++I + K E+Q  DER++PFSF TD   I   Q+
Sbjct: 195 YLTDSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQKGDERIVPFSFTTDPEDIQIDQV 254

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPE
Sbjct: 255 SCWLTYTNEKTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPE 314

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE K
Sbjct: 315 GLDTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEFK 374

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF  GQ NG++GYEEAAAQGLVAGIN+ARK    + I   R++ YIGV+IDDL +K
Sbjct: 375 NVEGLFSGGQFNGSSGYEEAAAQGLVAGINAARKLQGKEGIIIDRSEGYIGVLIDDLVTK 434

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I E R +   K  ++       +
Sbjct: 435 ESHEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEVGLIEEERYQNLLKKEEQIQKEIERV 494

Query: 479 KSL-VLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           +S+ V T+K +       +  G T      +  + +  P+ S + L S+     +    V
Sbjct: 495 ESVHVGTTKEVQEL---LESCGSTPLVSGASLADLIRRPELSYEILASVDKMRPELKYDV 551

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E++ I   Y  Y  RQ  + ++ K  EK+ IP D +Y  + +L  E K+KLS ++P ++
Sbjct: 552 AEQVNINIKYEGYIKRQKKQVEQFKKLEKKRIPADINYEEVQSLRLEAKQKLSQIRPASI 611

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QAS+I G++PA +++LL+Y++
Sbjct: 612 GQASRISGVSPADISVLLVYLE 633


>gi|123969416|ref|YP_001010274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. AS9601]
 gi|166222719|sp|A2BTQ6|MNMG_PROMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123199526|gb|ABM71167.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           AS9601]
          Length = 655

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/637 (44%), Positives = 384/637 (60%), Gaps = 23/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----- 117
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL     
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 118 -----DVIQGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                D+ + E  G N++K +   I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEQIGLNSKKILKKRIKGVKTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKRSIIFDELDVQPSTAVDKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F  +
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFANK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLGECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I FSR  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFSRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E   KR++ Y 
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLINE---KRWSAYQ 484

Query: 469 QEYNFLRS---LLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSIC 522
           ++ N L      L +  L + +  S  I  +   K +   T  E L  P+F   +L    
Sbjct: 485 EKMNLLEEEKFRLNNTRLKNTDEISKKIELETGSKIKGSTTLKELLKRPNFHYSDLIKYN 544

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            + R   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E
Sbjct: 545 LNERNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARE 604

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            L+ +KP N   ASKI G++ A L  LL+++K   +K
Sbjct: 605 NLNKIKPKNFGDASKIPGVSKADLTALLVWLKIREIK 641


>gi|126642227|ref|YP_001085211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 17978]
          Length = 599

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/596 (45%), Positives = 370/596 (62%), Gaps = 6/596 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GK HLVREIDAL G M   AD  GIQFR+LN +
Sbjct: 1   MGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREIDALGGAMALAADKGGIQFRILNSR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AVR  R QADR  Y+ A++  + +Q NLD+ Q        E + +  +V Q      
Sbjct: 61  KGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDLIVEGDTVKGVVTQMGIRFD 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TVVLTTGTFL GVIH+G  K   GR GD PS +L     +     GRLKTGTP R+D 
Sbjct: 121 AKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLRELKLPVGRLKTGTPPRIDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +     Q  D      SFM D  +   Q+ C IT TN +TH II   +  S +Y+G
Sbjct: 181 RSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTNEKTHDIIRGGLDRSPMYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +YPNGIST+LP ++Q + +R+
Sbjct: 241 VIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELYPNGISTSLPFDVQFELVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ AGQINGTTGYEEA AQGL+A
Sbjct: 301 IRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFAGQINGTTGYEEAGAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+AR++ + +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRMFTSRAEYRLMLREDNADQR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTR 502
           LT IG +LG + + R   + + ++      S L+ L     N        ++     K  
Sbjct: 421 LTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLWAAPNNPMGKKFVEMTGADLSKEC 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
           +A + L  P+ +   +  +     + S  V E+++I   Y  Y  RQ  +  ++K  E+ 
Sbjct: 481 SAIDLLKRPNINFSQIAELT--GSEVSQQVGEQIEIAVKYEGYINRQHEDVAQLKRLEET 538

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TPAA+ L++I I+KN +
Sbjct: 539 KIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTPAAVQLVMITIRKNNM 594


>gi|33519484|ref|NP_878316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Blochmannia floridanus]
 gi|81170525|sp|Q7VQW3|MNMG_BLOFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33517147|emb|CAD83529.1| glucose inhibited division protein [Candidatus Blochmannia
           floridanus]
          Length = 634

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/618 (44%), Positives = 390/618 (63%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVI++GGGHAG E+A  ++++   T LITH   TIG MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   NFDVIIVGGGHAGTESALASSRMKCKTLLITHNVDTIGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M +  D +GIQFR+LN +KG AV+  R QAD+ LYR A++  +  Q++L ++Q  V
Sbjct: 66  MGGIMAKAIDQSGIQFRILNTRKGAAVKSTRAQADKILYRQAIRHALEIQDSLFILQASV 125

Query: 125 AGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD-SPSNSL 182
                ++N +  +V+   ++ I   +VVLTTGTFL G IHIG      GR GD   S+SL
Sbjct: 126 EDLIIKQNKVIGVVIPKIAIEIYAKSVVLTTGTFLNGKIHIGMNNFKGGRSGDLESSSSL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                   F   RLKTGT  R+  K + +D    Q +D  L  FSF    +   +QI C 
Sbjct: 186 SQKLRDLSFRINRLKTGTSPRIHAKGVNFDCMSVQNSDSPLPVFSFTGSFEQHPKQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T TN +TH II  N+  S +YSG I    PRYCPSIEDK+VRF +R+ HQ+FLEPEGL 
Sbjct: 246 STYTNKKTHDIIRLNLNQSPVYSGLINGISPRYCPSIEDKVVRFSDRDAHQVFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LP  IQ + I +I GLE  +IIRPGYAIEYD+ +P++L  TLE+K IS
Sbjct: 306 TSEIYVNGVSTSLPFNIQTEIIHSIFGLENAHIIRPGYAIEYDFFDPRDLKLTLESKFIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFL+GQINGTTGYEEAAAQG++AGIN+AR           R  +Y+GV++DDL + G  
Sbjct: 366 GLFLSGQINGTTGYEEAAAQGILAGINAARYVQNKPGWYPRRDQAYLGVLVDDLCTYGTK 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+SLR DNAD RLT +  + G I + R + F    +     R  L++ 
Sbjct: 426 EPYRMFTSRSEYRLSLREDNADLRLTTVAREFGLIDDNRWRIFCLKQENIEKERQRLRNT 485

Query: 482 VL--TSKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICP-DARKFSSLVIERLQ 537
            +   S+++   +       K + + E  L  P+ +   L  +    + K    V E+++
Sbjct: 486 YIFPYSEDIVQLNRFLNSPIKNKVSGEDLLKRPEMNYVKLMQLNTFQSVKLDYQVFEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ  E K+  + E  L+P D +Y  +  LS E+ +K +  +P+++ QAS+
Sbjct: 546 IQIKYSGYLLRQQEEIKKYLYYENTLLPIDINYHDIAGLSKEVIDKFNDCRPYSIGQASR 605

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++ +LI++KK
Sbjct: 606 IPGVTPAAISNVLIWLKK 623


>gi|327398258|ref|YP_004339127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Hippea maritima DSM 10411]
 gi|327180887|gb|AEA33068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Hippea maritima DSM 10411]
          Length = 628

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/626 (43%), Positives = 389/626 (62%), Gaps = 23/626 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAGCEA+ + A+LG +T L+T    +IG+MSCNPAIGGL KGHLV+E+D
Sbjct: 5   KRYDVIVIGGGHAGCEASLINARLGLNTLLLTIALDSIGAMSCNPAIGGLAKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M R  D  G+QF++LN  KGPAV   R QAD   Y+L M+  +  Q++LD+ Q  
Sbjct: 65  IFGGEMARNIDETGLQFKILNRSKGPAVWSSRAQADMTAYKLRMKYTLERQDHLDIKQET 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +   C+ VV+TTGTF++G I IG  +  AGR  + PS  L 
Sbjct: 125 VDEIIVEDNRVVGVKTHLGNEYYCNAVVVTTGTFMKGKIFIGLNEYEAGRAWEPPSRKLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +S  +      RLKTGT  RLD +TI +D    Q  D+  +PFSF T ++    + C +T
Sbjct: 185 DSLRRLGLRVSRLKTGTTPRLDARTIDFDALIPQPGDDDPVPFSFRTKQLNRPNVPCYLT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I++N+  S +YSG ++S GPRYCPSIEDK+V+F E+  HQIFLEP+   + 
Sbjct: 245 YTNERTHEVILKNLDQSPLYSGMVESVGPRYCPSIEDKVVKFFEKKQHQIFLEPQDEKST 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y +G+ T++  E+Q  F+RTI GLEKV I+RPGYAIEYD+++P +L  +LETKKI GL
Sbjct: 305 EIYADGLHTSMGYEVQLNFLRTIKGLEKVEIMRPGYAIEYDFVDPTQLKHSLETKKIRGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGT+GYEEAAAQG+VAGIN+A    + +     R ++Y GV+IDDL +KG  EP
Sbjct: 365 FLAGQINGTSGYEEAAAQGIVAGINAAFYLMEKEPFILRRDEAYTGVLIDDLVTKGTKEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DN   RL     K G + +          +E+  ++     +  
Sbjct: 425 YRMFTSRAEYRLILREDNTHLRLAEKSFKAGLLDK----------EEFEMIQEQKTKIEE 474

Query: 484 TSKNLSSTSISFKQDG------------KTRTAY-EFLSYPDFSIQNLFSICPDARKFSS 530
           T K L +T I   +D             KT+T   + L   + +   L  + P+  +  +
Sbjct: 475 TIKKLKTTHIFPTEDTNKKLKELGTEIIKTKTDLAKLLRRTEVNYDKLRELLPELEELDN 534

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + + ++I+  Y  Y   Q  + ++ K  E   IP++FDY+ +  LSNE++ KL  +KP 
Sbjct: 535 YIKQEVEIDIKYEGYLTLQKQQIEKFKKYENMKIPENFDYTKVGGLSNEVRGKLMEVKPT 594

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
           ++ QA +I G+TPAA+++L+IY+KK+
Sbjct: 595 SIGQAMRISGVTPAAISILMIYLKKH 620


>gi|237743015|ref|ZP_04573496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 7_1]
 gi|260495537|ref|ZP_05815662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
 gi|229433575|gb|EEO43787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 7_1]
 gi|260196879|gb|EEW94401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
          Length = 633

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/630 (43%), Positives = 380/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D +  
Sbjct: 182 EDLPVSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +QI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 KQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGS--TLLELLRRPEVTFEDIKYISEEIKEVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPIDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|325192232|emb|CCA26686.1| tRNA uridine 5carboxymethylaminomethyl modification enzyme gidA
           putative [Albugo laibachii Nc14]
          Length = 671

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 302/631 (47%), Positives = 393/631 (62%), Gaps = 21/631 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDVIV+GGGHAGCEAAA A + GA TAL+T K  TIG MSCNP+IGG+GKG LVREI
Sbjct: 28  NPDYDVIVVGGGHAGCEAAAAAVRAGAKTALVTQKLHTIGEMSCNPSIGGVGKGTLVREI 87

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDGLMGR+AD AGIQ+ +LN  KGPAVRGPR Q DR+LY+  MQR + S   L + + 
Sbjct: 88  DALDGLMGRIADQAGIQYHMLNASKGPAVRGPRAQMDRDLYQKTMQRFLRSIAGLTLEEE 147

Query: 123 EVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGK-LKIPAGRMG---- 175
            V      K+   +  I+      I    VV+TTGTFLRG+I++G+ ++IPAGR      
Sbjct: 148 AVDDLIVSKSGHRALGIITSSGRCIHSRAVVITTGTFLRGMIYLGRDIRIPAGRHRRDCR 207

Query: 176 --DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK- 232
             + PS  L  +   F+F  GRLKTGTP RLDG TI  +  E Q++D     FS++ D  
Sbjct: 208 EVEPPSVGLAKTLQDFEFPIGRLKTGTPPRLDGNTIDTNGLEVQYSDPVPQLFSYLHDLE 267

Query: 233 ---ITNRQIECGITRTNLETHRIIMENIKHSAIYS-GDIKSYGPRYCPSIEDKIVRFGER 288
                N+ + C +T TN  TH ++ +N+     +S G+ K  GPRYCPSI+ K++RF +R
Sbjct: 268 PPIPQNKLVTCHVTYTNEVTHELVRDNLDSLPEFSTGNGKGVGPRYCPSIDTKVLRFPDR 327

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           N HQI+LEPEGL T +VYPNGISTA PE++Q + +RTI GLEK  I+RPGY++EYDYI+P
Sbjct: 328 NRHQIWLEPEGLQTSIVYPNGISTAFPEKLQLELVRTIKGLEKAEIVRPGYSVEYDYIDP 387

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  TLETKKI GL+LAGQINGTTGYEEAAAQG++AG+N+   SN L      R D++I
Sbjct: 388 RSLHATLETKKIQGLYLAGQINGTTGYEEAAAQGVIAGLNAGLTSNDLPPFTLDRADAFI 447

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG--CIGERRQKRFAK 466
           GV+IDDLTS G  EPYRMFTSR+EYR+ LR DNAD RLT    +     +   R ++   
Sbjct: 448 GVLIDDLTSLGTNEPYRMFTSRSEYRLLLRQDNADLRLTRRAYEHHPTLVSTERMRQLDL 507

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--- 523
             Q  +  R  L+S V      +   +   +DG  R+AY+ LS+P  S   L  I     
Sbjct: 508 KTQLMDEGREALQSFVQDPHEWTRFGVKVSRDGVARSAYQILSFPQVSSSTLKEIWKRVP 567

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             +     + V E L  ES YAA    Q  E    + ++   +P   DYS    +S+E +
Sbjct: 568 LLNHESTRNKVRELLSTESLYAAQLRSQRHEIVMYRDKQHIELPNWIDYSKFSMISSEER 627

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
           EKL   KP  +  AS+I G+  + L +L  Y
Sbjct: 628 EKLQEAKPTTIYAASRISGVRSSTLLMLYQY 658


>gi|16802001|ref|NP_472269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria innocua Clip11262]
 gi|21263670|sp|Q926U8|MNMG_LISIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16415483|emb|CAC98167.1| gidA [Listeria innocua Clip11262]
          Length = 629

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMMLEQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQRAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|317485843|ref|ZP_07944707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bilophila wadsworthia 3_1_6]
 gi|316922949|gb|EFV44171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bilophila wadsworthia 3_1_6]
          Length = 619

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/619 (43%), Positives = 369/619 (59%), Gaps = 9/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+G GHAGCEAA   A+ G    LIT     IG +SCNPAIGGL KGH+VREIDAL
Sbjct: 2   FDCIVVGAGHAGCEAAMTLARFGQRVLLITGNVDRIGHLSCNPAIGGLAKGHMVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y  A +  + ++ ++ + Q  V 
Sbjct: 62  GGMMGLWADRAGIQFRTLNASKGPAVRATRAQIDRDSYMEAAKAALFAEPDITIWQDTVD 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                    + +  +         V+LTTGTFL G+IH+G    P GR+GD+ +  L +S
Sbjct: 122 EVLELGGRAAGVRTELGQTFEAPHVILTTGTFLCGLIHVGLTHFPGGRLGDAAAMKLSDS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K     GRLKTGT  RL   +I + + E+Q  D+    FSF   K    Q+ C +T T
Sbjct: 182 LRKHGLTLGRLKTGTTPRLLRSSIDFSQMEEQPGDDPAPGFSFYGPKPGQPQVPCYVTWT 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I   +  S +++G I+  G RYCPS+EDK+ RF ER  H +F+EPEGLN    
Sbjct: 242 NERTHDAIRSGMDRSPLFTGVIEGTGARYCPSVEDKVARFPERERHHVFIEPEGLNGQEC 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q   I +IPGLE   ++RPGYAIEYDY++P +L PTLE K + GL+L
Sbjct: 302 YANGISTSLPLDVQLAMIASIPGLEHAKMVRPGYAIEYDYVDPVQLEPTLEAKVLPGLWL 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG+ A IN   +          R  +Y+ V++DDL ++G  EPYR
Sbjct: 362 AGQINGTSGYEEAAAQGMWAAINVGCRLTGRQPFLPGRDVAYMSVLVDDLVTRGTQEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR  NAD RLTP+G +LG +G+ +   F +       L  +L+ + ++ 
Sbjct: 422 MFTSRAEYRLLLREANADARLTPLGRELGLVGDEQWSAFRRKQDALGRLLDMLREVRVSP 481

Query: 486 KNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              ++TS +F++ G     K+ T  E L  P  +++ L  + P    F   V+   +   
Sbjct: 482 D--AATSDAFRELGEPVPNKSLTLEEVLRRPSMTLERLERLHPGVAAFPEEVLLEAETSV 539

Query: 541 SYAAYTGRQ-MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
            YA Y  RQ  +  +  + EE RL P D DY S+  LS E+ EKL  ++P  L QA +I 
Sbjct: 540 KYAGYLVRQDELVKRSARLEEVRL-PADLDYPSVSGLSAEIVEKLCAVRPRTLGQAGRIS 598

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAAL  L I++KK ++
Sbjct: 599 GVTPAALTCLEIHLKKRSL 617


>gi|109947998|ref|YP_665226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter acinonychis str. Sheeba]
 gi|123066121|sp|Q17VU9|MNMG_HELAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109715219|emb|CAK00227.1| glucose inhibited division protein A [Helicobacter acinonychis str.
           Sheeba]
          Length = 621

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/627 (45%), Positives = 378/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA T LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGAKTHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ GK+I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGKSINFEGLEEHFGDTNPPYFSYKTKNFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPTTHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEETIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL      LG + +   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYHLGLMEKDFYKELKKDKQEIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K +G      + L+   FS++ + S        S  V
Sbjct: 480 CVLTPSKEVLKRLSELDENPINDKING-----VDLLARDSFSLEKMRSFFSFLAPLSERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|225631114|ref|ZP_03787837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591191|gb|EEH12350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 567

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/564 (47%), Positives = 354/564 (62%), Gaps = 21/564 (3%)

Query: 76  AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--- 132
           A I   +LN  +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N   
Sbjct: 1   ASIHSVILNSSRGAAVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNG 60

Query: 133 --IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
              I +++      I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++
Sbjct: 61  ELCIKAVITSSGEHILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYN 120

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETH 250
           F  GRL+TGTP RLD  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH
Sbjct: 121 FKLGRLRTGTPPRLDRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTH 180

Query: 251 RIIMENIKHSAI-YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           +II EN+  SA  Y  DI    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNG
Sbjct: 181 KIIRENLHRSASSYLDDI--IAPRYCPSIEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNG 238

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           IS +LP E+Q + I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQI
Sbjct: 239 ISNSLPIEVQREMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQI 298

Query: 370 NGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           NGTTGYEEAA QG++AGIN+A  +  K +     RTDSYIGVMIDDL +KGV+EPYR+FT
Sbjct: 299 NGTTGYEEAAGQGIIAGINAALSAFEKKESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFT 358

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           SRAEYR+++R DNAD RLT  G  +  +   R       ++    L   L SL +T + L
Sbjct: 359 SRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQL 418

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL------------VIERL 536
            S  I    DG  +TA + LSYP+     L  I P+    +              + E +
Sbjct: 419 RSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSITRWDGTAMGSITKNEICEAV 478

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE+ Y  Y  RQ  + K ++ E    IP DF+YS +  LS+E+ EKL  +KP  +  A 
Sbjct: 479 EIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAK 538

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I+G+TPAA+  +L+Y++    K+
Sbjct: 539 QIQGITPAAIVGILVYLRNRKTKV 562


>gi|298695967|gb|ADI99189.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 594

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/592 (45%), Positives = 376/592 (63%), Gaps = 7/592 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDVVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEF 507
           LG I E R  RF +  Q+ +     L  + +  K    T    +Q G +R      A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRI--KPNEHTQAIIEQHGGSRLKDGILAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  I  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQ 590


>gi|213409413|ref|XP_002175477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Schizosaccharomyces japonicus yFS275]
 gi|212003524|gb|EEB09184.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Schizosaccharomyces japonicus yFS275]
          Length = 674

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/627 (43%), Positives = 386/627 (61%), Gaps = 16/627 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGGHAG EAAA +A+ G  T LIT     IG MSCNPA GG+GKG L+REIDALDG
Sbjct: 30  VIVIGGGHAGVEAAAASARSGVKTWLITKSKRDIGKMSCNPAFGGIGKGTLLREIDALDG 89

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQGEVA 125
           ++GRV D + IQFR+LN  KGPAV  PR Q DR+ ++  MQ  + S +   L +I+G+V 
Sbjct: 90  VVGRVCDESAIQFRLLNRSKGPAVWSPRAQMDRKAFQRNMQSTLASYDLKLLQIIEGDVV 149

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             N      +K  IS++++ D +    ++VV+ TGTFL   +HIG   IP GR+G++PS 
Sbjct: 150 DINVNTTGADKPFISNVLLADGTKFDATSVVIATGTFLSAELHIGHKSIPGGRIGENPSC 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---- 236
           +L ++  K  F   RLKTGTP RL   +I   K   ++ D++  PFS++  +   +    
Sbjct: 210 ALSDTLRKLGFRIKRLKTGTPPRLASHSIDITKMIPEYGDDQPAPFSYLNSRDNFQPSLP 269

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C +T TN  TH I+ +N+ H A +   +    PRYCPSIE KIVRF  R  H ++LE
Sbjct: 270 QRPCYVTYTNATTHEIVRKNM-HLAPHMAAVHINSPRYCPSIETKIVRFPLRERHIVWLE 328

Query: 297 PEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           PEG + D + YPNG+S +LPE++Q Q IR+I GL+   I++P Y + YDY++P +L  +L
Sbjct: 329 PEGFDEDALWYPNGLSNSLPEDVQLQLIRSISGLKDAVIVQPAYGVMYDYLDPLQLNASL 388

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET+ +SGLFLAGQINGTTGYEEAAAQG++AGIN+A+ +   + +   R  + +GV++DDL
Sbjct: 389 ETQLVSGLFLAGQINGTTGYEEAAAQGVLAGINAAKYTKNEELVVIPRKVAMLGVLVDDL 448

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI--GERRQKRFAKYIQEYNF 473
            +KGV EPYRMFTSR+EYR++ R DNAD RLTP+   +G +     R   F   +++   
Sbjct: 449 VTKGVTEPYRMFTSRSEYRLTTRADNADERLTPLAKNIGLLDNNPNRYTLFQSMLKQRQK 508

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           +    K   LT+        +  QDGK RT +E L  P F    L  + P  ++ S   +
Sbjct: 509 VIEAAKEFSLTAHEWKQLGYTVNQDGKHRTLWELLRNPTFDRMRLLKLIPSTKELSQTQL 568

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKF-EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            R+ +E+ Y  Y  +Q  E + + F EE  +IP D DY+++  +S E    L  +KP +L
Sbjct: 569 NRILVEALYTTYIEQQESENRFLNFREEATIIPNDVDYTAIGGISTEEINLLQCIKPSSL 628

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVK 619
            Q  +I G+ P  +  LL ++++N  K
Sbjct: 629 AQLKQISGIKPGTIIRLLRHVRRNASK 655


>gi|262039034|ref|ZP_06012368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
 gi|261746944|gb|EEY34449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
          Length = 628

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/625 (42%), Positives = 395/625 (63%), Gaps = 16/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIVIG GHAG EA+  +A+LG  TA+ T     IG MSCNP++GG  K HLV+E+D
Sbjct: 2   REYDVIVIGAGHAGIEASLASARLGMKTAVFTITLDNIGVMSCNPSVGGPAKSHLVKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D + +Q R+LN KKGPAVR  R Q+DR++Y   M++ + +QENLD+IQ  
Sbjct: 62  ALGGEMGRNMDKSFVQMRILNTKKGPAVRSLRAQSDRKIYAKEMKKTLENQENLDIIQDI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  E   I  I  +     +   V+  TGTFLRG+++IG+ +I  GRMG+  S  L 
Sbjct: 122 VTEFTVENGEIKGIKTKTGLEFKAKAVITATGTFLRGLMYIGEKRIKGGRMGELSSEELT 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-----DKITNRQI 238
           +S     F   R KTGTP R+D +T+   K E+Q   E+ +P  F       + +   Q+
Sbjct: 182 DSLKSLGFKMDRFKTGTPPRIDIRTLDVSKLEEQ-PGEKGVPLKFSMRTPDEEVLEKPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +TRTNL+ H+II++N+  + +Y+G I S GPRYCPSIEDK+V+F E++ H +FLEPE
Sbjct: 241 SCYLTRTNLKAHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVKFHEKDSHHLFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +T  VY +G+ST+ P E Q + + TI GLE  +I+R GYA+EYD ++P EL  TLETK
Sbjct: 301 GFDTAEVYISGLSTSYPAEYQQKIVNTIEGLENAHIMRYGYAVEYDIVDPGELDYTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           ++ GL+LAGQINGT+GYEEAAAQG++AGIN+A K    +     R  SYIG MIDDL +K
Sbjct: 361 RVKGLYLAGQINGTSGYEEAAAQGIIAGINAALKIKGEEPFILDRESSYIGTMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            ++EPYRMFT+R+E+R+ LR DNAD RL+    K+G + ++   +  +  +  +     L
Sbjct: 421 ELIEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLLDKKYYDKIEEKKKNVSETIEKL 480

Query: 479 KSLVLTSKNLSSTSI--SFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIE- 534
           +++ L + N     I   + +  K+ T   E L  P  + Q++  I       S+L  + 
Sbjct: 481 ENIKLGTSNGRLVEILDKYYESLKSGTTLKEILRRPKVTYQDIKYIAEIIENVSNLSFDE 540

Query: 535 ----RLQIESSYAAYTGR-QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
               +++++  Y  Y  + + I  ++ K ++K+ IPK+FDY  +  ++ E K++L   +P
Sbjct: 541 ETEYQIEVQVKYEGYIAKAKQIMDRQKKLDDKK-IPKNFDYGVMKGITREAKQRLEEKRP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
           +N+ QAS+I G+TPA +++LL+Y++
Sbjct: 600 YNVGQASRISGVTPADISVLLMYLE 624


>gi|325663375|ref|ZP_08151825.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086947|ref|ZP_08336023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470829|gb|EGC74059.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330409608|gb|EGG89047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 640

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/619 (44%), Positives = 385/619 (62%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y + VIG GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 15  YGIAVIGAGHAGCEAALAAARLGVRTIMFTVSVDSIALMPCNPNIGGSSKGHLVKEVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENLD+ Q EV 
Sbjct: 75  GGEMGKVIDRTFIQSKMLNKSKGPAVHSLRAQADKARYSTEMRKVLEQQENLDIKQAEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +     ++  C  VVL TGT+L+     G++    G  G   +N L + 
Sbjct: 135 EILVENGKVTGVKTFSGAVYHCDAVVLCTGTYLKSRCIYGEVSENCGPNGLKAANYLSDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +      R KTGTPAR+D  +I + K E+QF DER++PFSF T  +++   Q+ C +T
Sbjct: 195 LKELGVQMYRFKTGTPARIDRNSIDFTKMEEQFGDERVVPFSFTTNPEEVQIDQVSCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL+T+
Sbjct: 255 YTNERTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGLDTN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  R++PGLE   I+R  YAIEYD I+ ++L+ TLE KKISGL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRSVPGLEHAKIVRNAYAIEYDCIDARQLYATLEFKKISGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGLVAGIN+ARK    + I   R+  YIGV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAAAQGLVAGINAARKVLGKEQIIIDRSQGYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK---YIQEYNFLRSLLKS 480
           YRM TSRAEYR+ LR DNAD RLT IG ++G I E R K   K    I+E   +  L  +
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTEIGYQVGLIDEERYKNLKKKERQIEEQ--VERLEHT 492

Query: 481 LVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            V  S+ +       +Q G T      T  E +  P+ S + L +I P   + S  V+E+
Sbjct: 493 NVGASRPVQEV---LEQYGSTPLKNGITLAELIRRPELSYEALEAIDPGRTELSEEVVEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQM + ++ K  E + IP   +Y  + +L  E K+KL+  +P ++ QA
Sbjct: 550 INIRIKYDGYIRRQMKQVEQFKKLETKRIPDAINYDEIGSLRIEAKQKLNQYRPISIGQA 609

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +++LL+Y++
Sbjct: 610 SRISGVSPADISVLLVYME 628


>gi|320547684|ref|ZP_08041969.1| glucose inhibited division protein A [Streptococcus equinus ATCC
           9812]
 gi|320447759|gb|EFW88517.1| glucose inhibited division protein A [Streptococcus equinus ATCC
           9812]
          Length = 634

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/616 (43%), Positives = 378/616 (61%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF K  ++++   + L SL 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDEERYARFLKRKRQFDNELTRLSSLK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
           +      N    ++ FK      TA EF+  P+ + +   S + P   K  S VIE L+ 
Sbjct: 488 IKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYEIATSFVGPAEEKLDSKVIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +++L++Y++
Sbjct: 608 SGVNPADISILMVYLE 623


>gi|313157561|gb|EFR56979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alistipes sp. HGB5]
          Length = 627

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/622 (44%), Positives = 388/622 (62%), Gaps = 19/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAGCEAA+ AA+LG+ T L+T   + + SMSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDIIVIGGGHAGCEAASAAARLGSRTLLLTMDMTKMASMSCNPAVGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D   IQFR+LN  KG A+  PR Q D+  +    +  + +  NL + Q    
Sbjct: 65  GGQMGRITDLTTIQFRMLNRSKGAAMWSPRAQCDKSRFSAQWRHTLENTVNLYIWQDAAT 124

Query: 126 G--FNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              F+T   K  I  +  Q      C  VVLT+GTFL G++H G      GR GD+ S+ 
Sbjct: 125 ELLFDTAGVKPRIKGVRTQMGIEFACRAVVLTSGTFLGGMMHCGTSHAEGGRAGDAASHG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           +  S     F+TGR+KTGTPARLD +TI ++  E Q+ DE    FSF  D +    Q+ C
Sbjct: 185 ITESLRAIGFETGRMKTGTPARLDARTIDFESLEPQYGDENPDKFSFSPDTQPVKHQLPC 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  T+ E H ++      S +++G IK  GPRYCPSIEDK+  F +++ HQ+FLEPEG 
Sbjct: 245 FLVYTSAEVHDLLRTGFDRSPLFNGTIKGIGPRYCPSIEDKLRTFADKDQHQLFLEPEGE 304

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+  Y NG S++LP +IQ + +  I G E ++I RPGYAIEYDY  P +L  +LETK +
Sbjct: 305 STNEYYLNGFSSSLPWDIQWEALHKIRGFEDLHIFRPGYAIEYDYFPPTQLHHSLETKLV 364

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGL+ AGQ+NGTTGYEEAAAQGL+AGIN+ R     + +   R ++YIGV+IDDL +KGV
Sbjct: 365 SGLYFAGQVNGTTGYEEAAAQGLIAGINAHRALKGEEAVVLQRDEAYIGVLIDDLVTKGV 424

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-- 478
            EPYRMFTSRAEYRI LR DNAD RLTPIG K+G I    QKR+A + ++   + SL+  
Sbjct: 425 DEPYRMFTSRAEYRILLRQDNADLRLTPIGYKIGLIS---QKRYAHFTEKKASVESLISF 481

Query: 479 ---KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------S 529
              +S+     N    S++ +   + R  Y+ L   + + ++L       RKF      S
Sbjct: 482 ARRQSIKAAEINDYLESVNSEPLTQGRKLYDILMRNNVTFESLSEALLKLRKFISDNNIS 541

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           +  IE  +I+  Y  Y  R+   A+++   E   IP+DFD+ S+ +L+ E ++KL+ ++P
Sbjct: 542 AEAIEEAEIQIKYKGYIEREKFIAEKLHRLENIRIPEDFDFHSMNSLTIEARQKLTRIRP 601

Query: 590 FNLLQASKIEGMTPAALNLLLI 611
             + QAS+I G++PA +N+LL+
Sbjct: 602 ATIGQASRIPGVSPADVNVLLV 623


>gi|297618521|ref|YP_003703680.1| glucose inhibited division protein A [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297146358|gb|ADI03115.1| glucose inhibited division protein A [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 643

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/616 (43%), Positives = 389/616 (63%), Gaps = 4/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEAA  AA++G  T L+T     I  M CNP++GG  KG LVREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAALAAARMGCKTLLVTISIDGIALMPCNPSVGGPAKGQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D A +Q R+LN  KGPAVR  R QAD++ Y+  M + +L++ NLD++Q EV
Sbjct: 67  LGGEMGKNIDKARLQIRMLNTAKGPAVRALRAQADKKRYQKEMTKTLLAESNLDILQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  IV +  +  +   +V+TTGT+L+G I +G +    G     P+  L  
Sbjct: 127 VKILAGAGRVEGIVTRTGAKYQTKALVVTTGTYLKGRIIVGDVTYDGGPNPFPPATKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTP R+  K+I + KTE+Q  D  ++ FS+M+ ++   Q+ C +T 
Sbjct: 187 SLRELGLVLGRFKTGTPPRVSRKSIDFSKTEEQPGDPGVLNFSYMSPRVEKPQVSCWLTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ETHRI+ EN+  S +++G I+  GPRYCPS EDK+VRF  +  HQIF+EPEGL+TD 
Sbjct: 247 STPETHRIVKENLHRSPLFTGVIQGVGPRYCPSFEDKVVRFAHKEQHQIFIEPEGLDTDE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G++T+LPE++Q   + +IPGLE+  I+R GYAIEYDY+ P +L  TLET+ + GLF
Sbjct: 307 MYIQGLNTSLPEDVQLAVLHSIPGLERARIVRTGYAIEYDYVLPSQLKLTLETRVVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A    + +     R+++YIGV+IDDL +KG+ EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGIIAGINAALFVQEKEPFVLKRSEAYIGVLIDDLVTKGIEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS-LLKSLVL 483
           R+ TSRAEYR+ LR DNAD RLT  G  +G + + R  RF   ++    LR  LL++ V 
Sbjct: 427 RLMTSRAEYRLLLRQDNADIRLTEKGRDIGLVDDERYTRFRSKVRRMEELREMLLRNKVG 486

Query: 484 TSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            S    +  +  +   + R A   +E L  P+ SI++L S+     +F   V E ++IE 
Sbjct: 487 VSHEGVAKLLRERGTSELREAVSLWELLRRPEVSIEDLVSLAMVGEEFEPEVREEVEIEC 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+   +  +  E + IP D DY  +  LSNE + KL   +P ++ QAS++ G
Sbjct: 547 KYEGYIRKQVEMVERFERMENKRIPPDIDYDDVVGLSNEGRLKLKTARPESMGQASRMSG 606

Query: 601 MTPAALNLLLIYIKKN 616
           ++PA + +LLI++++ 
Sbjct: 607 ISPADITVLLIHLERE 622


>gi|78214049|ref|YP_382828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9605]
 gi|123577362|sp|Q3AGK9|MNMG_SYNSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78198508|gb|ABB36273.1| glucose inhibited division protein A [Synechococcus sp. CC9605]
          Length = 643

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 381/618 (61%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            G  T    ++  IS I     S+     V+LT GTFL G I +G   + AGR G+  + 
Sbjct: 130 TGLETTVAGDQQRISGIRTYFGSVYGADAVILTAGTFLGGRIWVGHQSMAAGRAGEQAAE 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q+ 
Sbjct: 190 GLTETLQELGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQMS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 250 CHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LETK+
Sbjct: 310 RDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLETKR 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQ+NGTTGYEEAAAQGLVAG+N+ R     + + F R  SYIG MIDDL SK 
Sbjct: 370 VRGLFSAGQLNGTTGYEEAAAQGLVAGVNAGRLIGGQEPVHFPREGSYIGTMIDDLVSKD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  L+
Sbjct: 430 LREPYRVLTSRSEYRLILRGDNADRRLTPLGHELGLIDDRRWQLFEDKLQAMEGEKQRLE 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ L   +  + ++  +     +   T  + L  P     +L             V E  
Sbjct: 490 TVRLKVSDPVAPAVEQETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPLPVREGA 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL+ ++P  L QAS
Sbjct: 550 EIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLTAIQPSTLGQAS 609

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++ A +  LL++++
Sbjct: 610 RIPGVSKADITALLMWLE 627


>gi|81170581|sp|Q5LXK0|MNMG_STRT1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170582|sp|Q5M250|MNMG_STRT2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 633

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/625 (44%), Positives = 386/625 (61%), Gaps = 16/625 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 6   DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 66  DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQS 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +L
Sbjct: 126 MVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVTL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C
Sbjct: 186 ADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG 
Sbjct: 246 WLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK I
Sbjct: 306 ETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--- 477
           LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F   I++  F R L   
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFK--IKKNQFDRELTRL 483

Query: 478 ----LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSL 531
               LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + 
Sbjct: 484 SKEKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAK 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           VIE L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  
Sbjct: 541 VIELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           + QAS+I G+ PA +++L++Y++ N
Sbjct: 601 IGQASRISGVNPADISILMVYLEGN 625


>gi|116628660|ref|YP_821279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus LMD-9]
 gi|122266746|sp|Q03I89|MNMG_STRTD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116101937|gb|ABJ67083.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Streptococcus thermophilus LMD-9]
          Length = 633

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/625 (44%), Positives = 386/625 (61%), Gaps = 16/625 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 6   DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 66  DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVECQENLTLRQS 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +L
Sbjct: 126 MVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVTL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C
Sbjct: 186 ADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG 
Sbjct: 246 WLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK I
Sbjct: 306 ETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--- 477
           LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F   I++  F R L   
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFK--IKKNQFDRELTRL 483

Query: 478 ----LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSL 531
               LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + 
Sbjct: 484 SKEKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAK 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           VIE L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  
Sbjct: 541 VIELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           + QAS+I G+ PA +++L++Y++ N
Sbjct: 601 IGQASRISGVNPADISILMVYLEGN 625


>gi|47095617|ref|ZP_00233225.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           1/2a F6854]
 gi|254830754|ref|ZP_05235409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 10403S]
 gi|254899732|ref|ZP_05259656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes J0161]
 gi|254913065|ref|ZP_05263077.1| glucose-inhibited division protein A [Listeria monocytogenes J2818]
 gi|254937446|ref|ZP_05269143.1| glucose-inhibited division protein A [Listeria monocytogenes F6900]
 gi|47016047|gb|EAL06972.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610048|gb|EEW22656.1| glucose-inhibited division protein A [Listeria monocytogenes F6900]
 gi|293591066|gb|EFF99400.1| glucose-inhibited division protein A [Listeria monocytogenes J2818]
          Length = 629

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAETVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|145250253|ref|XP_001396640.1| translation optimization protein 1 [Aspergillus niger CBS 513.88]
 gi|134082157|emb|CAK42270.1| unnamed protein product [Aspergillus niger]
          Length = 698

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/636 (43%), Positives = 392/636 (61%), Gaps = 23/636 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 38  TRAYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+LY+  MQ E+   E L +++G
Sbjct: 98  DAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRDLYKKYMQEELQGTEGLSIVEG 157

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K+           I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 158 KVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVVITTGTFLGGEIHIGLEAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S     F  GRLKTGTP RLD KTI +   E Q  D    PFS++  +
Sbjct: 218 RMGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDRKTINFAPLEVQEGDHPPSPFSYLNGR 277

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN + H I+  N+  +      ++  GPRYCPS+E KI+RF ++ 
Sbjct: 278 VQVDDEAQLTCWMTYTNDDVHDIVRANLDKTIHIRETVR--GPRYCPSLESKIIRFTDKK 335

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +P + Q+  +R + GLE V +++PGY +EYDYI+P
Sbjct: 336 RHLIWLEPEGFAPNDVIYPNGISMTIPADAQYAMLRKVHGLENVTMLQPGYGVEYDYIDP 395

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +   + +   R+D++I
Sbjct: 396 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGREPLTLRRSDAFI 455

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDLT+KGV EPYRMFT+R+EYRI+ R DNAD RLT +  + G + ++R + F +  
Sbjct: 456 GIMIDDLTTKGVSEPYRMFTTRSEYRITTRSDNADLRLTRMAREAGIVSDKRWRHFTETE 515

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SI 521
            + N L++LL++  ++S   +      + D   R+A + L   +  I +L          
Sbjct: 516 AQINELQTLLENTKMSSYAWARKGFKARIDPSQRSALDLLCLRESDIDSLIPHIESPTGT 575

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
              A  F   +  R+ IE  YA +  RQ   AK+   +E   IP D DY+++  +S E K
Sbjct: 576 VYSASSFPPEIRNRVSIEGRYAPFVIRQENAAKKSLRDENLSIPADLDYATVQGISIEEK 635

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           + L  ++P ++  A +IEG+TP+ +  +L+++ + +
Sbjct: 636 QALERVRPVSIGMARRIEGVTPSGVLRVLMHVHRTS 671


>gi|227485740|ref|ZP_03916056.1| glucose-inhibited division protein A [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236295|gb|EEI86310.1| glucose-inhibited division protein A [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 643

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 384/618 (62%), Gaps = 12/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+G GHAGCEA   AA+LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 24  SYDVVVVGAGHAGCEAGLAAARLGMKTLVLTTSMESIADMPCNPNIGGTGKGHIVREIDA 83

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  ++NLD+ + EV
Sbjct: 84  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKKVL--EDNLDLFEQEV 141

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N +   I S      ++     +++ TGT+L G I IG  +  +G  G S +  L +
Sbjct: 142 DKINYQDGKIVSCETVQGAIYETKAIIICTGTYLNGKILIGDYEKVSGPHGLSAATYLTD 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           S  +  F   R KTGTPAR+   +I ++KT  Q  D+ +IPFSF+    D    RQ +C 
Sbjct: 202 SLREMGFSIRRFKTGTPARVHRDSINYEKTTVQEGDKEVIPFSFLNEGKDYTDRRQEDCF 261

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET +IIM+N+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL+
Sbjct: 262 LTYTTEETKQIIMDNLDRSPIYGGKIKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPEGLS 321

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y  G+S++LP+E+Q +F +TI GLE V I+RP YAIEYD I+ +EL  TLE+K  S
Sbjct: 322 TKEMYVQGVSSSLPQEVQMEFYKTIIGLEDVKIMRPAYAIEYDMIDTRELKRTLESKAYS 381

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K    +     R+D+YIGV+IDDL ++G  
Sbjct: 382 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEEEFILDRSDAYIGVLIDDLVTEGTN 441

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RL+  G  +G + + R ++     ++       LK++
Sbjct: 442 EPYRMMTSRCEYRLTMRQDNADERLSKKGRDIGLVTDERYQKMLDKREKITSEIERLKNI 501

Query: 482 VLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +LT K+   T+ + ++ G T      T YE +  P+ + QN     P+     S +   +
Sbjct: 502 MLTPKD--ETNKALEELGSTPLNNGLTLYELIKRPEITYQNSVIFDPERSDLPSYISLSV 559

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           Q E  Y  Y  +Q+ + ++ K  E + +  D DY+ +P L  E  EKL+ +KP ++ QAS
Sbjct: 560 QTEIKYEGYIKKQLKDIEKFKKLESKKLSHDIDYAKIPGLKKESAEKLNEIKPDSIGQAS 619

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++PA +N+LLI +K
Sbjct: 620 RISGVSPADINVLLIRLK 637


>gi|116874161|ref|YP_850942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123464237|sp|A0AMD1|MNMG_LISW6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116743039|emb|CAK22163.1| glucose-inhibited division protein A [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 629

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/619 (42%), Positives = 377/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DHLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T  +   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVDMMLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK    + I   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFDKEPIILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFITDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|297379438|gb|ADI34325.1| glucose-inhibited division protein A [Helicobacter pylori v225d]
          Length = 624

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/623 (45%), Positives = 375/623 (60%), Gaps = 13/623 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E+D L 
Sbjct: 6   DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG + D +G+Q+RVLN  KGPAVRG RTQ D + YR+  +  +L+  NL V Q     
Sbjct: 66  GAMGIITDNSGLQYRVLNASKGPAVRGTRTQIDMDTYRIFARNLVLNTPNLSVSQEMTES 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNSL  + 
Sbjct: 126 LIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNSLALNL 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C IT TN
Sbjct: 186 RELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPIQLSCFITYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++    Y
Sbjct: 246 PITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI GL+LA
Sbjct: 306 INGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  EPYRM
Sbjct: 366 GQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTNEPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           FTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  VLT  
Sbjct: 426 FTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKECVLTPS 485

Query: 486 -------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                    L    I+ K DG +      L+   F+++ + S        +  V+E+++I
Sbjct: 486 KEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G+TPA L++L +YI    ++ N
Sbjct: 601 SGITPANLDVLHLYIHLRHLRKN 623


>gi|167564630|ref|ZP_02357546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia oklahomensis EO147]
          Length = 630

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/602 (45%), Positives = 372/602 (61%), Gaps = 15/602 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR+LN  
Sbjct: 1   MGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQFRILNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IH+G      GR GD  + SL +   +     GRLKTGTP R+DG
Sbjct: 121 ARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYS 264
           +TI + K E+Q  D   IP FSF+     + +Q+ C +T TN  TH II   +  S +Y+
Sbjct: 181 RTIDFSKLEEQPGDLDPIPVFSFIGRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYT 240

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+  YPNGIST+LP ++Q + + 
Sbjct: 241 GVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVH 300

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GLF AGQINGTTGYEEAAAQGL+
Sbjct: 301 SMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGLFFAGQINGTTGYEEAAAQGLL 360

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EPYRMFTSRAEYR+SLR DNAD 
Sbjct: 361 AGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADM 420

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKT 501
           RLT IG +LG + + R   F +     +     L++  +T K L    +T++  K     
Sbjct: 421 RLTEIGRELGVVDDVRWGAFNRKRDAVSRETERLRTTWVTPKTLPAEEATALLGKPIDHE 480

Query: 502 RTAYEFLSYPDFSIQNLFSI----C------PDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +  E L  P  S + +  +    C       D     + + E+++I   Y  Y  RQ  
Sbjct: 481 YSLAELLRRPGVSYEGVCELRNGECGPTEPLADDEILLAQIKEQIEIGIKYQGYIERQAG 540

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           E +     E   +P   DY+ +  LS E+ +KL+  +P  + QAS+I G+TPAA++LL++
Sbjct: 541 EIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGVTPAAISLLMV 600

Query: 612 YI 613
           ++
Sbjct: 601 HL 602


>gi|256028336|ref|ZP_05442170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289766262|ref|ZP_06525640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289717817|gb|EFD81829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
          Length = 633

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/630 (43%), Positives = 380/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +QI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 KQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVGIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGS--TLLELLRRPEVTFEDIKYISEEIKSVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|269204348|ref|YP_003283617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ED98]
 gi|262076638|gb|ACY12611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ED98]
          Length = 594

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/592 (45%), Positives = 376/592 (63%), Gaps = 7/592 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEF 507
           LG I E R  RF +  Q+ +     L  + +  K    T    +Q G +R      A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRI--KPNEHTQAIIEQHGGSRLKDGILAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  I  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQ 590


>gi|313676468|ref|YP_004054464.1| glucose inhibited division protein a [Marivirga tractuosa DSM 4126]
 gi|312943166|gb|ADR22356.1| glucose inhibited division protein A [Marivirga tractuosa DSM 4126]
          Length = 621

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 303/629 (48%), Positives = 401/629 (63%), Gaps = 31/629 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD+IV+GGGHAGCEAAA AA +G+   L T   +TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   QDYDLIVVGGGHAGCEAAAAAANMGSKVLLATMNMNTIAQMSCNPAVGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDV 119
           AL G  G +AD + IQFR+LN  KGPA+  PRTQ DR    E +RL ++R      NLD 
Sbjct: 63  ALGGYSGIIADKSMIQFRMLNKSKGPAMWSPRTQNDRMRFAEEWRLQLER----IPNLDF 118

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  VAG   E N +  I       I+   VVLT GTFL G+IHIG+ +   GR  +  S
Sbjct: 119 WQEMVAGIIVENNKVVGIETSMGLKIKAKAVVLTNGTFLNGLIHIGEKQFGGGRSAERAS 178

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQI 238
             +     +  F++GR+KTGTP R+DG+TI + K E+Q  DE    FSF  + KI +RQ 
Sbjct: 179 KGITEQLEELGFESGRMKTGTPPRVDGRTIDYTKIEEQKGDEHPEKFSFSKETKILDRQR 238

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN   H I+ E  + S +++G I+  GPRYCPSIEDKI RF ERN HQIF+EPE
Sbjct: 239 SCHITYTNPLVHEILEEGFEKSPMFNGRIQGLGPRYCPSIEDKINRFAERNRHQIFVEPE 298

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +T  VY NG ST+LPE+IQH+ I+ I G + V + RPGYAIEYD+  P +L  TLETK
Sbjct: 299 GWDTVEVYVNGFSTSLPEDIQHKAIKEIEGFKNVKMFRPGYAIEYDFFPPTQLKTTLETK 358

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  L+ AGQINGTTGYEEAA QGL+AGIN+  K N+ +    +R+++YIGV+IDDL +K
Sbjct: 359 LVENLYFAGQINGTTGYEEAACQGLMAGINAHLKINEKEPFVLTRSEAYIGVLIDDLINK 418

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-----F 473
           G  EPYRMFTSRAE+RI LR DNAD RLTP+G ++G   + R     KY++E       F
Sbjct: 419 GTDEPYRMFTSRAEHRILLRQDNADVRLTPLGHQIGLASDER----MKYVEEKQLHIDAF 474

Query: 474 LRSLLKSLV---LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--- 527
           +++L    V   + ++NLS  + S  ++ KT  AY  L  P+ S + L  I  +  +   
Sbjct: 475 IKNLKTHKVKPNIVNENLSKINSSPIKE-KT-NAYSILKRPEISFKELQQIEDELNQMIN 532

Query: 528 -FSSLVIERLQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            +S  VIE  +I   Y +Y  +  QMIE  ++K  E   I    DYS +PALS+E KEKL
Sbjct: 533 GYSKEVIEASEIHIKYESYIQKENQMIE--KMKNLEDLKIKDSLDYSQIPALSSEAKEKL 590

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYI 613
             +KP  L QAS+I G+TPA +++L++Y+
Sbjct: 591 RKVKPQTLGQASRISGVTPADISILMVYL 619


>gi|308184015|ref|YP_003928148.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SJM180]
 gi|308059935|gb|ADO01831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SJM180]
          Length = 621

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/627 (45%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + I  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEIVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+A            R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLIAGINAALALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNAEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|303247211|ref|ZP_07333485.1| glucose inhibited division protein A [Desulfovibrio fructosovorans
           JJ]
 gi|302491370|gb|EFL51258.1| glucose inhibited division protein A [Desulfovibrio fructosovorans
           JJ]
          Length = 618

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 368/618 (59%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D+IV+G GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VREIDA
Sbjct: 2   TFDLIVVGAGHAGCEAAMAAARLGLETLLVTQNVDRIGHLSCNPAIGGLAKGHMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR LN +KGPAVR  R Q DR+ Y   ++  +  Q+NL V Q  V
Sbjct: 62  LGGMMGLWADAAGIQFRTLNTRKGPAVRSTRAQIDRDAYMRVVKAAVFGQDNLTVRQDSV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                       + +          V+LTTGTFL G++HIG  K+  GR+GD PS+ L  
Sbjct: 122 EEVLAVDGRARGVRVASGEDFAARVVLLTTGTFLCGLMHIGLTKLRGGRLGDPPSDGLSA 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GRLKTGT  RL  K+I +  T  Q  D    PFSF        Q+ C +T 
Sbjct: 182 SLRRHGIALGRLKTGTTPRLLAKSIDFSVTTPQPGDTSPPPFSFHGPGPILPQVPCHLTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH  I      S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL +  
Sbjct: 242 TNARTHEAIRAGFDRSPLFTGVIEGTGARYCPSVEDKVARFPERDRHHVFLEPEGLESPE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E Q   I TIPGLEK  I+RPGYAIEYDY +P +L PTLETK + GL+
Sbjct: 302 IYPNGISTSLPIETQKAMIATIPGLEKAVIVRPGYAIEYDYADPVQLLPTLETKALPGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL A +N        +     R  +Y  V++DDL +KG  EPY
Sbjct: 362 LAGQINGTSGYEEAAGQGLWAALNVFCALAGREPFLPRRDQAYTAVLVDDLVTKGTSEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RMFTSRAE+R+ LR  NAD RLTP+G +LG +G+R   ++  Y ++   L ++++ +   
Sbjct: 422 RMFTSRAEHRLLLREGNADARLTPMGRELGLVGDR---QWDLYRRKEAALAAVIEGIAAR 478

Query: 484 -----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                   +    ++  +   ++    E L  P+  I +L    P+     +++    + 
Sbjct: 479 RVRPDDCDDADWQTLGGRPHDRSLRLEELLRRPEVGIADLARFWPELGSLDAIIAVEAET 538

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ   A  +   E  L+P   DY+++  LS E+ EKL+ + P +L QA +I
Sbjct: 539 RIKYEGYLRRQEELAGRMDRLEAVLLPPGIDYAAVAGLSREVVEKLTRIAPRSLGQAGRI 598

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+TPAAL+ L I++KK+
Sbjct: 599 SGVTPAALSCLEIHLKKH 616


>gi|16804847|ref|NP_466332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes EGD-e]
 gi|47093269|ref|ZP_00231040.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           4b H7858]
 gi|217965983|ref|YP_002351661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HCC23]
 gi|224502776|ref|ZP_03671083.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-561]
 gi|226225360|ref|YP_002759467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes Clip81459]
 gi|254824825|ref|ZP_05229826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-194]
 gi|254827378|ref|ZP_05232065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL N3-165]
 gi|254930916|ref|ZP_05264275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HPB2262]
 gi|255028099|ref|ZP_05300050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes LO28]
 gi|284800303|ref|YP_003412168.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5578]
 gi|284993488|ref|YP_003415256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5923]
 gi|290891991|ref|ZP_06554988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-071]
 gi|21263664|sp|Q8Y3M5|MNMG_LISMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16412310|emb|CAD01023.1| gidA [Listeria monocytogenes EGD-e]
 gi|47018343|gb|EAL09105.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           4b H7858]
 gi|217335253|gb|ACK41047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HCC23]
 gi|225877822|emb|CAS06537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599756|gb|EEW13081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL N3-165]
 gi|284055865|gb|ADB66806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5578]
 gi|284058955|gb|ADB69894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5923]
 gi|290558585|gb|EFD92102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-071]
 gi|293582462|gb|EFF94494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HPB2262]
 gi|293594065|gb|EFG01826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-194]
 gi|307572400|emb|CAR85579.1| glucose-inhibited division protein A [Listeria monocytogenes L99]
 gi|328468282|gb|EGF39288.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 1816]
 gi|332313240|gb|EGJ26335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria monocytogenes str. Scott A]
          Length = 629

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|295108621|emb|CBL22574.1| glucose-inhibited division protein A [Ruminococcus obeum A2-162]
          Length = 629

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/623 (42%), Positives = 382/623 (61%), Gaps = 13/623 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++ D++V+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLV+E
Sbjct: 6   LEKTCDIVVVGAGHAGCEAALAGARLGLDTVMFTVSVDSIALMPCNPNVGGSSKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +QENL + Q
Sbjct: 66  LDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKQAYSTEMRKTLENQENLTIKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   I+ + +   ++  C  VVL TGT+L+     G +    G  G   +N 
Sbjct: 126 GEVTELLVEDGKITGVKLYSGAIYHCQAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANY 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +   Q  
Sbjct: 186 LTDSLKSLGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTDPESVQIPQKS 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 246 CWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q     ++PGLE   I++  YAIEYD INP++L+PTLE KK
Sbjct: 306 LYTNEMYIGGMSSSLPEDVQDAMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKK 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K 
Sbjct: 366 IKGLFSGGQFNGSSGYEEAAAQGLIAGINAAMEIKGQEQLVLDRSEAYIGVLIDDLVTKE 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE-------RRQKRFAKYIQEYN 472
             EPYRM TSRAEYR+ LR DNAD RL   G + G I E       R+++   K I    
Sbjct: 426 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYQAGLIDEETYQAVLRKEEAIQKEIDRTE 485

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              + +       K L     +  + G T    E +  P+ + ++L  I P+  +    V
Sbjct: 486 --HATIGGTPQVQKLLEEKGSTLLKSGTTIA--ELIRRPELNYEDLAPIDPERPELPWDV 541

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            ++++I   Y  Y  RQ+ + ++ K  E + IP+D DY  + +L  E ++KL + +P ++
Sbjct: 542 KQQVEINLKYEGYIKRQLKQVEQFKKLEAKKIPEDLDYEKVGSLRIEARQKLELYRPISI 601

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++LL+Y+++
Sbjct: 602 GQASRISGVSPADISVLLVYLEQ 624


>gi|291543432|emb|CBL16541.1| glucose-inhibited division protein A [Ruminococcus sp. 18P13]
          Length = 650

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/622 (44%), Positives = 376/622 (60%), Gaps = 20/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIVIG GHAG EAA  +A+LG  TA+ T     I +M CNP+IGG  KGHLVREIDAL
Sbjct: 28  YEVIVIGAGHAGVEAALASARLGCRTAMFTISLDQIANMPCNPSIGGTAKGHLVREIDAL 87

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R QADR  Y   M++    + NLD+ QGEV 
Sbjct: 88  GGEMGKAADATFIQSRMLNRGKGPAVHSLRVQADRVAYHCYMKQVCEQEPNLDIKQGEVV 147

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  I  +  ++     VV++TGT+LRG+IH+G+    +G     PS  L  S
Sbjct: 148 EILTENGAVCGIRTRLGTVYATRAVVISTGTYLRGLIHVGEASYQSGPDAALPSIQLSES 207

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                    R KTGTP R+  ++I +DK E+Q  D  ++PFSF +D  ++ NR + C I 
Sbjct: 208 LRALHVPLRRFKTGTPCRVHRRSIDFDKLERQDGDPDIVPFSFASDASRMQNR-VSCYIA 266

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GLNTD
Sbjct: 267 YTNAQTHAVIRANLHRSPMYSGRIEGVGPRYCPSIEDKIVRFPDKERHQLFVEPMGLNTD 326

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPEE+Q  F+RTI GLE V I+RP YAIEYD  +P  L P+LE + + GL
Sbjct: 327 EYYLQGMSSSLPEEVQLAFLRTIVGLEHVEIMRPAYAIEYDCCDPTALSPSLEFRGLHGL 386

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R  +YIG +IDDL +KG  EP
Sbjct: 387 FGAGQFNGSSGYEEAAAQGLMAGINAARLVQGKEPVILDRGTAYIGTLIDDLVTKGCNEP 446

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ----------KRFAKYIQEYNF 473
           YRM TSR+EYR+ LR DNAD RL+ IG  +G + E R            R  K +Q  N 
Sbjct: 447 YRMMTSRSEYRLILRQDNADQRLSRIGHSIGLLSEERYAALRAKETAISREIKRVQHCNI 506

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             S   +  LT+   +  +   K         + +  P      L    PD       V 
Sbjct: 507 APSDAFADFLTNHGTTPLTTGCK-------LADLIRRPQLGYSMLAPFDPDRPVLPEDVG 559

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++++E  YA Y  +Q+ +  +++  E++L+P D DYS +  L  E  EKL+  +P N+ 
Sbjct: 560 QQVELEIKYAGYIEKQLAQVAQMRGLEEKLLPNDADYSQVRGLRLEAAEKLNRQRPINIG 619

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+++ +
Sbjct: 620 QASRISGVSPADISVLLVWLSQ 641


>gi|317177029|dbj|BAJ54818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F16]
          Length = 621

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/627 (45%), Positives = 378/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVLGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPHFSYKTKNFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNA  RL     +LG + E   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNALFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNDRV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|262341291|ref|YP_003284146.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272628|gb|ACY40536.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 622

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 279/624 (44%), Positives = 384/624 (61%), Gaps = 25/624 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+GGGHAG EA+  ++ +G+ T L+T    TIG MSCNPAIGG+ KG +VREIDAL
Sbjct: 6   YDIIVVGGGHAGAEASLASSNIGSKTLLVTTNLQTIGQMSCNPAIGGIAKGQMVREIDAL 65

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G ++D + IQFR+LN  KGPA+  PR Q DR+L+    +  +     LD+ Q  V 
Sbjct: 66  GGYSGIISDYSMIQFRMLNQSKGPAMWSPRAQCDRKLFSYYWRFFLEKNTQLDLYQDTVT 125

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +       I+  +V+LT GTFL G IHIG+ KI  GR+ +     +   
Sbjct: 126 SLIIEKNQVKGVKTFFGLKIKGKSVILTNGTFLNGKIHIGEKKINGGRIAEQEVRGITEQ 185

Query: 186 FMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQIECGI 242
             K F F  GR+KTGT  R+DG+++ +DK + Q+ D     FSF   T K+T +Q +C I
Sbjct: 186 LTKHFGFKYGRMKTGTSPRVDGRSLNYDKMKSQYGDIHPKKFSFFYETKKLT-KQRKCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN + H +I +N   S I++G I+   PRYCPSIE+KI RF ++  H IF+EPEG NT
Sbjct: 245 TYTNQKVHDLIRKNFNCSPIFTGSIQGVSPRYCPSIEEKIFRFSDKEEHPIFVEPEGWNT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG ST+  E+IQ+Q ++ I G EKV I+RPGYAIEYDY  P++L PTLE+K I  
Sbjct: 305 VEVYINGFSTSFSEKIQYQSLKQISGFEKVKILRPGYAIEYDYFPPEQLKPTLESKIIEN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN++ K ++ +     R  +YIGV+IDDL +KG  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLIAGINASLKISQKEPFILKRNQAYIGVLIDDLITKGTEE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----------YIQEYN 472
           PYRMFTSRAEYR+ LR DNAD RLTP+G  +G I E + +   K            Q  N
Sbjct: 425 PYRMFTSRAEYRMLLRQDNADIRLTPMGYNIGLISEEKMRILDKKKSNIEKCMHLFQNRN 484

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFS 529
           F   ++  ++   K     S     D K  T    LS  +  I+++ SI     + + F 
Sbjct: 485 FEPKVINPILDDKK-----SPRIYHDKKIET---ILSRSEIDIKDIISIPFLMKEIKNFD 536

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             ++E++ I   Y  Y  R+   AK++   E   IP +FDY ++ +LS E +EKL   +P
Sbjct: 537 QEILEQVSIRIKYKGYIDREKENAKKLLKLENLKIPNNFDYKTIQSLSLEAREKLDYHRP 596

Query: 590 FNLLQASKIEGMTPAALNLLLIYI 613
            +L QAS+I G++P+ L++LLI++
Sbjct: 597 VSLAQASRISGVSPSDLSILLIHM 620


>gi|55821969|ref|YP_140411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus LMG 18311]
 gi|55823886|ref|YP_142327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus CNRZ1066]
 gi|55737954|gb|AAV61596.1| glucose inhibited division protein A [Streptococcus thermophilus
           LMG 18311]
 gi|55739871|gb|AAV63512.1| glucose inhibited division protein A [Streptococcus thermophilus
           CNRZ1066]
          Length = 667

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/625 (44%), Positives = 386/625 (61%), Gaps = 16/625 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 40  DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 99

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 100 DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQS 159

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +L
Sbjct: 160 MVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVTL 219

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C
Sbjct: 220 ADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPC 279

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG 
Sbjct: 280 WLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGR 339

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK I
Sbjct: 340 ETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKLI 399

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG 
Sbjct: 400 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGT 459

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--- 477
           LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F   I++  F R L   
Sbjct: 460 LEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFK--IKKNQFDRELTRL 517

Query: 478 ----LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSL 531
               LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + 
Sbjct: 518 SKEKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAK 574

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           VIE L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  
Sbjct: 575 VIELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPET 634

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           + QAS+I G+ PA +++L++Y++ N
Sbjct: 635 IGQASRISGVNPADISILMVYLEGN 659


>gi|281492460|ref|YP_003354440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376124|gb|ADA65615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactococcus lactis subsp. lactis KF147]
          Length = 625

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/620 (44%), Positives = 381/620 (61%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 6   NYDVVVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + QG V
Sbjct: 66  LGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYATSMKNTVSDQENLTLRQGMV 125

Query: 125 AGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                + EK  +  I     +     TV++TTGT LRG I IG+LK  +G      S  L
Sbjct: 126 EELILDEEKKKVIGIKTSTGTKYGAKTVIITTGTALRGEIIIGELKYSSGPNNSLSSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     QI C
Sbjct: 186 ADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDENYLKDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG 
Sbjct: 246 WLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 306 NTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAQMMRPGYAIEYDVVMPHQLRPTLETKLV 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPEFILKRSEAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS 476
           LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G +     E  Q + A++ +E   L S
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDEQWEHYQAKMAQFDREMKRLNS 485

Query: 477 -LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIE 534
             LK L  T + L        +D    T  EFL  P+     +      A  K    VIE
Sbjct: 486 EKLKPLPDTQEKLGKLGFGPIKD--ALTGAEFLKRPEVHYNEVIDFIGQAPEKIDRTVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L Q
Sbjct: 544 LIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|78185764|ref|YP_378198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9902]
 gi|123580595|sp|Q3AUG9|MNMG_SYNS9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78170058|gb|ABB27155.1| Glucose-inhibited division protein A subfamily [Synechococcus sp.
           CC9902]
          Length = 641

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/618 (44%), Positives = 379/618 (61%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA   A+LG +TAL +     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITTARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  IQ R LN  +GPAV   R Q D+ LY   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATAIQKRTLNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            G   E    +  I  +     S+     VVLT GTFL G I +G   + AGR G+  + 
Sbjct: 130 TGLEVEGEEEQQRIQGVRTYFGSVYAAQAVVLTAGTFLGGRIWVGHQSMAAGRAGEQAAE 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q+ 
Sbjct: 190 GLTETLQGLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQMS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++  HQIFLEPEG
Sbjct: 250 CHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKESHQIFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LETK+
Sbjct: 310 RDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLETKR 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGLF AGQ+NGTTGYEEAAAQGLVAG+N+AR   + D + F R  SYIG MIDDL S+ 
Sbjct: 370 VSGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGEQDPVYFPREGSYIGTMIDDLVSQD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G  LG I +RR + F + +Q  +  +  L+
Sbjct: 430 LREPYRVLTSRSEYRLILRGDNADRRLTPLGRDLGLIDDRRWQLFEEKLQAMDAEKKRLE 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  L   +  + ++  +     +   T  + L  P     +L             V E  
Sbjct: 490 STRLKVSDPIAPTVEEETGAPIKGSITLADLLRRPAMHAADLVRHGLADGDLPLPVREGA 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+++  LSNE +EKLS ++P  L QA+
Sbjct: 550 EIDIKYSGYLQRQQQQIDQVKRQSQRKLPSDLNYTNIGTLSNEAREKLSAIQPTTLGQAN 609

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++ A +  LL++++
Sbjct: 610 RIPGVSQADITALLMWLE 627


>gi|329767567|ref|ZP_08259088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella haemolysans M341]
 gi|328839194|gb|EGF88778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella haemolysans M341]
          Length = 627

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/622 (43%), Positives = 378/622 (60%), Gaps = 3/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  +++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHASSRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  T+++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIEDNKVVGLRTMLGTAYKAKTIIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  DE    FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDEEEHAFSYETKEFVKDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNSTTHEIIDKNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   + +I GLE   I+R GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVHSIAGLENAVIMRNGYAIEYDAVNPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT      G + + R  +F +  +        LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTKERYNKFCEKRKMVADEIERLKTFRI 485

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    +   ++     + R    A + L  P+ S  N+  +  D       V+E+++IE 
Sbjct: 486 TPTAATLEKLAELNSAEIRDGILAIDMLRRPELSHANVLYLANDDTVLPKDVVEQVEIEV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K   +  IP D +Y  +P+L+ E +EKL  + P  + QAS+I G
Sbjct: 546 KYEGYIKKSLQQVEKLKKMNEMKIPTDLNYDEVPSLALEAREKLKKVLPLTIGQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           + PA +++LL+Y+++     NE
Sbjct: 606 VNPADISILLVYLEQRRGTNNE 627


>gi|302308765|ref|NP_985802.2| AFR255Wp [Ashbya gossypii ATCC 10895]
 gi|299790784|gb|AAS53626.2| AFR255Wp [Ashbya gossypii ATCC 10895]
          Length = 695

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/617 (43%), Positives = 387/617 (62%), Gaps = 24/617 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAGCEA++ AA+ G    L+T     IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 67  VVVIGGGHAGCEASSAAARAGGKATLVTPSLDKIGTCSCNPSMGGIGKGTLLREVDALDG 126

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG----- 122
           L  RV D AG+QF+VLN  +G AV GPR Q DR++Y   MQR + +   L +++G     
Sbjct: 127 LAPRVTDLAGLQFKVLNRSRGAAVWGPRAQIDRKIYMREMQRVMTNYPGLTLLEGSVDDL 186

Query: 123 -----EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                EVAG  T +  I  +++QD  ++R S VVLTTGTFL   IHIG    PAGR+G++
Sbjct: 187 VVEEKEVAG--TIRRSIRGVILQDQRLLRASRVVLTTGTFLGAEIHIGLQSFPAGRLGEA 244

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NR 236
           P+  +  +    DF  GRLKTGTPARLD  +I +    ++F DE   P S++ +K+   R
Sbjct: 245 PTYGISKTMRGLDFMMGRLKTGTPARLDKNSIDYTGMTREFGDEPPHPMSYLNNKVAAER 304

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C  T T  E H  ++ N+  S      +K  GPRYCPS+E K++RF  ++ H+I+LE
Sbjct: 305 QEVCFGTHTTKELHAYVVSNLHQSIHIKETVK--GPRYCPSLEAKVLRFPHKDSHRIWLE 362

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +++V+YPNGIS ++PE++QH+ ++ IPGL  V ++ P Y +EYDYI+P+EL  TLE
Sbjct: 363 PEGWDSEVIYPNGISNSMPEDVQHRMLQMIPGLANVKMLYPAYGVEYDYIDPRELKQTLE 422

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK++ GL+LAGQINGTTGYEEA AQG+VAG N+   S     +   R D+Y+GV+IDDL 
Sbjct: 423 TKRVDGLYLAGQINGTTGYEEACAQGIVAGANAGLASVGKSPLIIGRPDAYVGVLIDDLI 482

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFT+R+E+R+++R DNAD RLT +G + G +G+ R K F ++   YN +  
Sbjct: 483 TKGVEEPYRMFTTRSEFRLTVRADNADMRLTDLGHRAGVVGDERWKTFTEHRALYNDIHE 542

Query: 477 LLKSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
            L     ++     L +  +   Q G   +A+E   Y + ++  L +  PD         
Sbjct: 543 KLNHYTCSNTQWHKLCNEVVRSPQKGV--SAWEMYKYSNINLALLAASVPDLNIDIGSVP 600

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ +L  E  YA Y  +Q  +    + +E   +P + DYS++  ++ E +  L+ ++P
Sbjct: 601 VHVMHKLDAEGRYAPYLKKQRQQVHAYQADENIRLPDNIDYSTVQGINTEGQLLLNRVRP 660

Query: 590 FNLLQASKIEGMTPAAL 606
             L QA +I+G+TP A+
Sbjct: 661 QTLGQARRIQGITPVAM 677


>gi|124024586|ref|YP_001018893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9303]
 gi|166222717|sp|A2CDR8|MNMG_PROM3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123964872|gb|ABM79628.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9303]
          Length = 653

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/629 (43%), Positives = 381/629 (60%), Gaps = 20/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAALTAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  +Q RVLN  +GPAV   R Q D+ LY   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRLYSRQMLQLLQQTANLSLREAMVT 130

Query: 126 GFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           G   + +                 I+ +     S+ R   VVLTTGTFL G I +G   +
Sbjct: 131 GLEVKGDPSGGGEHWEPAQGHAAQITGVRTYFGSIYRAQAVVLTTGTFLGGQIWVGNQSM 190

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF- 228
           PAGR G+  +  L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF 
Sbjct: 191 PAGRAGEQAAEGLTEALESLGFQTNRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFD 250

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            T  ++  Q+ C ITRT   TH++I EN++ + IY G + S GPRYCPSIEDKIVRF ++
Sbjct: 251 PTTWVSGEQMSCHITRTTASTHQLIKENLELTPIYGGFLDSKGPRYCPSIEDKIVRFADK 310

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEG +T  +Y  G ST LPE +Q   +RT+PGLE+  ++RP YA++YDY+  
Sbjct: 311 DSHQIFLEPEGRDTPEIYVQGFSTGLPERLQLDLLRTLPGLEQCIMLRPAYAVDYDYLPA 370

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L P+L+TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR  +  + + F R  SYI
Sbjct: 371 TQLSPSLQTKRVKGLFTAGQLNGTTGYEEAAAQGLVAGLNAARLVHGQEQVHFPREGSYI 430

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I  RR + F    
Sbjct: 431 GTMIDDLVSKDLHEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQSKQ 490

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
                 +  L+   + + + ++ ++  K   K +   T  + L  P     +L       
Sbjct: 491 TALEDEKQRLEKQRIKASDPAAPALEAKTGAKIKGSITLADLLRRPGVHSADLIEHGLVD 550

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            + +  V E  +I+  Y+ Y  RQ  +  ++K + +R +P + DY+++  LS E +EKL+
Sbjct: 551 PELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEAREKLT 610

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            + P N  QAS+I G++ A L  LL++++
Sbjct: 611 AVGPLNFAQASQIPGVSKADLTALLVWLE 639


>gi|75909745|ref|YP_324041.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Anabaena variabilis ATCC 29413]
 gi|123608727|sp|Q3M790|MNMG_ANAVT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|75703470|gb|ABA23146.1| Glucose-inhibited division protein A subfamily [Anabaena variabilis
           ATCC 29413]
          Length = 640

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/623 (42%), Positives = 380/623 (60%), Gaps = 11/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  AFDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +  V
Sbjct: 72  LGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAIMKNIVENQENLSIRESMV 131

Query: 125 A----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                G N E   +  +        +C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 132 TDLVLGANDE---VIGVETYFGVAFQCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K + Q  DE +  FSF  D    R Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSKMQLQPGDEEVRWFSFDPDVWVEREQLP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHMTRTTPETHRLIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFVDKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 369 VAGLFCAGQVNGTTGYEEAAAQGIVAGINAARFVRDQEMIVFPREQSYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DN+D RLTP+G ++G I +RR + F +  ++    +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNSDQRLTPLGREIGLIDDRRWQLFTRKQEQITGEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +I+       +   T  + L  P F   +L        + +    E  
Sbjct: 489 ATRVKENDEVGKAIASNTQQAIKGSITLADLLRRPGFHYVDLDRYGLGNPELTPAEREGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  + +R +P+D DY+++  LS E +EKL+ +KP  + QA+
Sbjct: 549 EIDIKYSGYLARQQSQIEQIARQAQRQLPRDLDYTTVETLSKEAREKLNKVKPMTIGQAA 608

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +N LLIY++    K
Sbjct: 609 RIGGVNPADINALLIYLELRQTK 631


>gi|325478848|gb|EGC81958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 632

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/624 (43%), Positives = 386/624 (61%), Gaps = 22/624 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+G GHAGCEAA   A+LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 9   SYDVVVVGAGHAGCEAALATARLGLKTLILTTSLESIADMPCNPNIGGTGKGHIVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD++LY   M++ + ++ENLD+ + EV
Sbjct: 69  LGGQMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKKLYHDEMKKTLENEENLDIFEQEV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N E   I S      ++     +++ TGT+L G I IG  +  +G  G S +  L +
Sbjct: 129 DKINYEDGKIVSCETVQGAIYDTKALIICTGTYLNGKILIGDYEKVSGPHGLSAATFLSD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           S  +  F   R KTGTPAR+D K++  +KTE Q  D  +IPFSF+    D     Q +C 
Sbjct: 189 SLEEMGFKLRRFKTGTPARVDRKSLHLEKTEIQKGDSEVIPFSFINEGEDFSDRHQEDCY 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+ ET  IIMEN+  S IY G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE L+
Sbjct: 249 LTYTSPETKEIIMENLYRSPIYGGHVKGIGPRYCPSIEDKMVRFPDRDVHQVFIEPESLS 308

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ + L+ TLE+K   
Sbjct: 309 TDEMYVQGVSSSLPQEVQFDFYKTIIGLEDVKIMRPAYAIEYDMIDTRNLYRTLESKDYE 368

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QG+VAGIN+A K    + +   R+D+YIGV+IDDL ++G  
Sbjct: 369 GLYFAGQINGSSGYEEAAGQGIVAGINAALKIKGKEPLILDRSDAYIGVLIDDLVTEGTN 428

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RLT  G ++G + E R ++  +  +  +   + LK++
Sbjct: 429 EPYRMMTSRCEYRLTMRQDNADQRLTERGYEIGLVSEDRYQKMKEKRKAIDDEIARLKNV 488

Query: 482 VLTSK--------NLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
           +LT K        +L ST +       D   R   +++   DF ++      P+  KF  
Sbjct: 489 ILTPKEEVNEKLVSLGSTPLKNALSLYDLIKRPELDYVKLKDFDLER-----PNLPKFQQ 543

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           +   + Q E  Y  Y  +QM +  + K  E + + K+ DY+ +  L  E  EKL+ ++P 
Sbjct: 544 I---QAQTEIKYEGYIKKQMADIDKFKKLEAKELDKNIDYTKIAGLKKESAEKLNEIQPE 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
           +L QAS+I G++PA +N+LLI +K
Sbjct: 601 SLGQASRISGVSPADINVLLIRLK 624


>gi|113476427|ref|YP_722488.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Trichodesmium erythraeum IMS101]
 gi|123056547|sp|Q110Q9|MNMG_TRIEI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110167475|gb|ABG52015.1| glucose inhibited division protein A [Trichodesmium erythraeum
           IMS101]
          Length = 637

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/626 (43%), Positives = 380/626 (60%), Gaps = 29/626 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 11  YDIIVVGAGHSGCEAALATARLGCHTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL V      
Sbjct: 71  GGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYATIMRNIVENQENLRV------ 124

Query: 126 GFNTEKNIISSIVMQDNSMI-----------RCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                +++++ +V+ DN  I           +C  V+LTTGTFL GVI +G   +PAGR 
Sbjct: 125 ----RESMVTDLVLGDNEEIIGVETYFGVAFKCKAVILTTGTFLGGVIWVGNKSMPAGRA 180

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  +  K  F+TGRLKTGTPAR+D +++ +   E Q  DE++  F+F  +   
Sbjct: 181 GEFSAIGLSETLNKLGFETGRLKTGTPARVDKRSVDYTDLEAQPGDEKVRWFTFDPEVWV 240

Query: 235 NR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            R Q+ C +TRT  ETH++I +N+  S +Y G + + GPRYCPSIEDKIVRF +++ HQI
Sbjct: 241 EREQMCCYLTRTTPETHKLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKHSHQI 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           F+EPEG +   +Y  G ST LPE++Q Q ++++PGLE   ++RP YA+EYDY+   + +P
Sbjct: 301 FIEPEGRDIPELYIQGFSTGLPEKLQLQMLQSLPGLENCLMLRPAYAVEYDYLPATQCYP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL TKKI GLF AGQINGTTGYEEAAAQGLVAGIN+ +     + I F R  SYIG +ID
Sbjct: 361 TLMTKKIEGLFCAGQINGTTGYEEAAAQGLVAGINAVKFVKNEEMIIFPREQSYIGTLID 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +K + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F       N 
Sbjct: 421 DLCTKDLREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWELFESKQANINS 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKF 528
            +S L S  +  K L   +I+   D  T+     T  + L  P F   +L          
Sbjct: 481 EKSRLNSTRI--KELDEVAINIVADTHTKIKGSITLADLLRRPGFHYVDLEKYNLGNLDL 538

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             +  E  +I+  Y+ Y  RQ  +  +I  ++ R +P + DY S+  LS E +EKLS ++
Sbjct: 539 KLVEKEGAEIDIKYSGYLQRQQNQIDQISRQKNRRLPTNLDYLSISTLSLEAREKLSKVQ 598

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +N LL+Y++
Sbjct: 599 PLTIGQASRIGGVNPADINALLVYLE 624


>gi|237797099|ref|YP_002864651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
 gi|229261234|gb|ACQ52267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
          Length = 625

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/619 (44%), Positives = 392/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y +G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVSGMSSSLPEDVQIKMYRSVPGLENAQILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEENPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERL 536
           K       L   S   K   K  + YE +  P+    + F + P   K  SL     E +
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK+ +Y  +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYEDRLIPKNINYLDIKGLRLEAIQKLKKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|254430251|ref|ZP_05043954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanobium sp. PCC 7001]
 gi|197624704|gb|EDY37263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanobium sp. PCC 7001]
          Length = 662

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/626 (42%), Positives = 376/626 (60%), Gaps = 16/626 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCE+A  AA+LG STAL T     I    CNPA+GG  K  LV E+DA
Sbjct: 8   SFDVIVVGGGHAGCESAVTAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + +  V
Sbjct: 68  LGGMIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREAMV 127

Query: 125 AGFNTEKNI------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            G   E               I+ +     S+     V+LTTGTFL G I +G   + AG
Sbjct: 128 TGLEVELEQPTEAQGPGPIGRITGVRTYFGSVYAAPAVILTTGTFLGGQIWVGHQSMRAG 187

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTD 231
           R G+  +  L  +     F  GRLKTGTPAR+D ++I  D+ E+Q +D     FSF    
Sbjct: 188 RAGEPAAEGLTEALQALGFAMGRLKTGTPARVDRRSIALDRLEEQPSDAEGRYFSFDPAA 247

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            ++   + C ITRT   THR+I +N+  + IY G I S GPRYCPSIEDKIVRF ++  H
Sbjct: 248 WVSGEPMSCHITRTTAATHRLIQDNLHLTPIYGGVIDSKGPRYCPSIEDKIVRFADKESH 307

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   +L
Sbjct: 308 QIFLEPEGRDTPEIYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPATQL 367

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            P+LETK+I+GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+      + F R  SYIG M
Sbjct: 368 KPSLETKRITGLFSAGQLNGTTGYEEAAAQGLVAGLNAARQLRGQAPVHFPRETSYIGTM 427

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G++LG I  RR + +    +  
Sbjct: 428 IDDLITKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGLELGLIDARRWQIYTAKQEAI 487

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKF 528
              +  L  + L + + ++ ++  +     +   T  + L  P F   +L          
Sbjct: 488 EAEKRRLAMVRLKASDPAAAAVEAETGAAIKGSITLADLLRRPGFHSADLVRHGLAGSDL 547

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            + V E  +I+  Y+ Y  RQ  +  +++ +  R +P   DY+ +  LS+E +EKL+ ++
Sbjct: 548 PAEVREGAEIDIKYSGYLARQQQQIDQVRRQADRPLPAGLDYAGIGTLSHEAREKLAAVQ 607

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  L QAS++ G++PA +  L+++++
Sbjct: 608 PHTLGQASRVPGVSPADITALMLWLE 633


>gi|46908999|ref|YP_015388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460831|sp|Q71VV1|MNMG_LISMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46882272|gb|AAT05565.1| glucose-inhibited division protein A [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 632

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK    + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFAKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|310778408|ref|YP_003966741.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
 gi|309747731|gb|ADO82393.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
          Length = 628

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/622 (44%), Positives = 383/622 (61%), Gaps = 12/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAGC+AA  AA++G  TA+ T     IG MSCNP+IGG  K HLV+EIDA
Sbjct: 3   NFDVIVVGAGHAGCDAALAAARMGMKTAIFTITLDNIGVMSCNPSIGGPAKSHLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN KKGPAVR  R QAD++LY + M++ I + +NL+ IQG V
Sbjct: 63  LGGEMGRNIDKTFIQMRILNTKKGPAVRSLRAQADKQLYHMEMKKTIENTDNLESIQGMV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  +  +     R   V++ +GTF+RG+IH+G  +   GRMG+ PS+ L  
Sbjct: 123 TEVLVEDGKIVGVKTKVGVEYRAKAVIIASGTFMRGLIHVGDKQFRGGRMGELPSDELPI 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNR-QIECG 241
           S  K     GR KTGTP R+D +TI + K E+Q  D+ L+ FS  T   +I  R QI C 
Sbjct: 183 SLEKIGLKLGRFKTGTPPRIDARTIDYSKIEEQPGDKELLKFSDRTPYSEIEGRKQIPCH 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN + H  I+++   S +++G I+  GPRYCPSIEDK+ R+ ++  H +FLE EG  
Sbjct: 243 IVFTNEKVHETILKSKSRSPLFNGTIQGTGPRYCPSIEDKVFRYQDKTRHHLFLEKEGYG 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY +G S++LP ++Q++ +R I GLE   I+R  YAIEYDYI P+EL  +LETKKI 
Sbjct: 303 TNEVYISGFSSSLPSDVQYEMLRKIEGLENAKIMRYAYAIEYDYILPEELKFSLETKKID 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGT+GYEEAA+QGL+AGIN++RK    D +   R DSYIG +IDDL +KG  
Sbjct: 363 GLYLAGQINGTSGYEEAASQGLIAGINASRKIQGKDPVVLDRADSYIGTLIDDLVTKGTN 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + +   +R  K   E   +   L+  
Sbjct: 423 EPYRMFTARSEYRLMLREDNADLRLSKIGYEIGLLQKEDYERVLKKENETAEIIEKLELQ 482

Query: 482 VLTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
            + S N     +  K          T  E L  P  + Q++  +       D   +S   
Sbjct: 483 YVGSSNERVNEVLEKAKEPALKSGTTLKELLRRPRVTFQDIKYVAELVENFDLDGYSKDA 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             + +++  YA Y  R +   ++ K  E + IP DFDY ++  L  E KEKL  +KP N+
Sbjct: 543 EYQAEVQVKYAGYIERSLKMIEKHKAIEGKKIPDDFDYETVSGLPREAKEKLKGVKPMNI 602

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QAS+I G++PA + +LLI +K
Sbjct: 603 GQASRISGVSPADIQVLLINLK 624


>gi|328858224|gb|EGG07337.1| hypothetical protein MELLADRAFT_62641 [Melampsora larici-populina
           98AG31]
          Length = 665

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/623 (43%), Positives = 385/623 (61%), Gaps = 15/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ AA+  AST L+T+   T+G MSCNP+ GG+GKG LVREIDAL
Sbjct: 40  YDVIVLGGGHAGTEAASGAARCNASTLLVTNSWKTVGEMSCNPSFGGIGKGTLVREIDAL 99

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+  D AGI F++LN  KGPAV GPR Q DR+LY+ ++Q ++     L + +G V 
Sbjct: 100 GGICGKACDEAGIVFQMLNRSKGPAVYGPRAQMDRQLYKQSVQNQLQKFNQLAIKEGTVT 159

Query: 126 GFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               E +            +S + +    +I+C ++V+ TGTFL G IHIG    P GR+
Sbjct: 160 DLILEHDNLLHRSSGHQARVSGLKLDTGEIIKCKSLVIATGTFLGGEIHIGMKSSPFGRI 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+S S SL NS     F   RLKTGTP RL   TI +     Q  D+   PFSFM   + 
Sbjct: 220 GESSSTSLSNSLKNVGFKLERLKTGTPPRLLKNTINFSNLFIQNGDQPPTPFSFMNQTVQ 279

Query: 235 N--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           N   Q+ C  T TN +TH I+ +N+  +     +++  GPRYCPS+E K+V+F +R+ H 
Sbjct: 280 NATNQLCCWKTHTNAQTHDIVRKNLDKTVHIREEVR--GPRYCPSLESKVVKFPDRDSHM 337

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           I+LEPEG  +D++YPNG+ST +P + Q Q +R+I GLE V I +PGY +EYD+++PKEL 
Sbjct: 338 IWLEPEGYESDLIYPNGLSTTIPPDAQLQMLRSIQGLEAVEIHQPGYGVEYDHVDPKELT 397

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK+I GLFLAGQINGTTGYEEA AQG++AGIN+   S     +  +R DS+IGV++
Sbjct: 398 NTLETKRIKGLFLAGQINGTTGYEEAGAQGVLAGINAGLSSQNALPLILTRADSFIGVLV 457

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R+SLR DNAD RLT    ++G I E R     +   + +
Sbjct: 458 DDLITKGVQEPYRMFTSRSEFRVSLRADNADLRLTKKARQVGVIDEDRWATVERTKTQID 517

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
                L+++ L+ +  S   I  ++D   ++A++ L      I+ L    P  +     +
Sbjct: 518 RSIEALQAVCLSQRAWSQVGIKVREDASLKSAFDVLRVQGVKIEQLCETVPQLKNVDPDI 577

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             R+++E+ Y     R    A++++ +E   +P + DY +L  LS E + +L   +P  L
Sbjct: 578 WRRIEVEALYRPIANRYEHNARQLEADELCRLPPNLDYHTLEYLSIEARHRLDSARPETL 637

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
             A ++EG+ P AL LL  ++++
Sbjct: 638 GAAKRLEGIDPNALILLSKHLRQ 660


>gi|168183720|ref|ZP_02618384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Bf]
 gi|182673272|gb|EDT85233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Bf]
          Length = 625

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/620 (44%), Positives = 391/620 (63%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAQILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEENPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IER 535
            K       L   S   K   K  + YE +  P+    + F + P   K  SL     E 
Sbjct: 487 GKREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEE 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I + Y  Y  +Q+ + ++ K  E RLIPK+ +Y  +  L  E  +KL  +KP N+ QA
Sbjct: 541 INIIAKYEGYINKQLEQVEQFKKYEDRLIPKNINYLDIKGLRLEAIQKLKKIKPINIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLIY+++
Sbjct: 601 SRISGVSPADISVLLIYMER 620


>gi|170760523|ref|YP_001788984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A3 str. Loch Maree]
 gi|205831525|sp|B1KUB1|MNMG_CLOBM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169407512|gb|ACA55923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 625

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/619 (44%), Positives = 389/619 (62%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMVEQPGDEKIVPFSFIHDKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHENIHRSPLYNGSIEGIGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGLVAGIN+  K    D +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLVAGINAVLKIKGKDPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G ++G + E R  ++    +        +K + +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTEMGYRIGLVKEDRYNKYLNRKKNVENEIERIKKVQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--DAR-KFSSLVIERL 536
           K       L   S   K   K  + YE +  P+    + F + P  D R   S    E +
Sbjct: 488 KKEINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPNLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK  +YS +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYENRLIPKSINYSDIKGLRIEAIQKLEKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|307721845|ref|YP_003892985.1| glucose inhibited division protein A [Sulfurimonas autotrophica DSM
           16294]
 gi|306979938|gb|ADN09973.1| glucose inhibited division protein A [Sulfurimonas autotrophica DSM
           16294]
          Length = 637

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/631 (43%), Positives = 384/631 (60%), Gaps = 23/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA+  +A++G  T L++     +G+ SCNPA+GGL KGHLVRE+DAL
Sbjct: 3   YDVIVVGGGHAGIEASLASARMGNKTLLVSMLAENVGATSCNPAVGGLAKGHLVRELDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D AGIQFR+LN  KGPAVRG R Q D + YR+  +  +L   NLD+ Q  V 
Sbjct: 63  GGEMGLITDEAGIQFRILNQTKGPAVRGSRAQIDMDKYRVIARNVVLGTPNLDLAQDTVE 122

Query: 126 GFNTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               E  +             +  +V    +  R + V++T+GTFL G+IH+G+++   G
Sbjct: 123 SLIIEDKVNSEAREGTLGCKEVKGVVTTLLNEYRANKVIITSGTFLNGIIHVGEVQQIGG 182

Query: 173 RMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           R G+  S  L  S +K D   +  RLKTGT AR+D  +I +   E+Q  DE   PFSF T
Sbjct: 183 RYGEQRSVGLSAS-LKNDCGLNIARLKTGTCARIDSSSIDFSVMEEQGGDELPNPFSFRT 241

Query: 231 DK----ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           D+     T  Q+ C I  TN  TH+II  N   + +++G I    PRYCPSIEDKI +F 
Sbjct: 242 DREKFRATKEQLPCYIAYTNETTHKIIESNFYRAPLFTGQIAGKSPRYCPSIEDKIDKFP 301

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +++ H +FLEP+ +    +Y NG+ST+LP E+Q   I ++ G+E   I+R GYAIEYD++
Sbjct: 302 DKDRHHLFLEPQTMENTEIYVNGMSTSLPPEVQRDMIHSVQGMENAKIVRYGYAIEYDFV 361

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P+EL  +LETKKI GL+LAGQINGTTGYEEAAAQG++AGIN+       + +   R ++
Sbjct: 362 DPRELKHSLETKKIKGLYLAGQINGTTGYEEAAAQGIMAGINAGLALQGKEPLILRRDEA 421

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL +KG  EPYRMFTSRAEYR+ LR ++AD RL   G +LG + +   +R   
Sbjct: 422 YIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREESADVRLGHYGHELGLVSDEEYERIKL 481

Query: 467 YIQEYNFLRSLLKSLVLT-SKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP 523
             Q+      LL+    T +K  ++   S  +       TA + ++   F ++ +  I P
Sbjct: 482 KAQQIREGAQLLEETKFTPNKEFNALLASMDEQPLKDVSTAQQLVARKTFDVEKMIKIVP 541

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +  K+   + + + +E  YA Y  +Q  E + +K   K  IP+DFD+S +  LSNE++EK
Sbjct: 542 ELDKYDDYIKDEILVEGKYARYVDKQSQEIERMKKYLKIAIPQDFDFSIVSGLSNEIQEK 601

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L+   P  L  A  I G+TPAA+ +L IYIK
Sbjct: 602 LAEFNPPTLQAAMNISGITPAAIEILHIYIK 632


>gi|33864441|ref|NP_896001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9313]
 gi|81170570|sp|Q7TUJ1|MNMG_PROMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33641221|emb|CAE22351.1| Glucose inhibited division protein A family [Prochlorococcus
           marinus str. MIT 9313]
          Length = 653

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/629 (43%), Positives = 380/629 (60%), Gaps = 20/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI++GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIIVGGGHAGCEAAITAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  +Q RVLN  +GPAV   R Q D+ LY   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRLYSRQMLQLLQQTANLSLREAMVT 130

Query: 126 GFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           G   + +                 I+ +     S+ R   VVLTTGTFL G I +G   +
Sbjct: 131 GLEVKGDPSGGGEHWEPAQGHAAQITGVRTYFGSIYRAQAVVLTTGTFLGGQIWVGNQSM 190

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF- 228
           PAGR G+  +  L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF 
Sbjct: 191 PAGRAGEQAAEGLTEALESLGFQTNRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFD 250

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            T  ++  Q+ C ITRT   TH++I EN++ + IY G + S GPRYCPSIEDKIVRF ++
Sbjct: 251 PTAWVSGEQMSCHITRTTASTHQLIKENLELTPIYGGFLDSKGPRYCPSIEDKIVRFADK 310

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEG +T  +Y  G ST LPE +Q   +RT+PGLE+  ++RP YA++YDY+  
Sbjct: 311 DSHQIFLEPEGRDTPEIYVQGFSTGLPERLQLDLLRTLPGLEQCVMLRPAYAVDYDYLPA 370

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L P+L+TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYI
Sbjct: 371 TQLSPSLQTKRVKGLFTAGQLNGTTGYEEAAAQGLVAGLNAARLVQGQEQVQFPREGSYI 430

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I  RR + F +  
Sbjct: 431 GTMIDDLVSKDLHEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQRKQ 490

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
                 +  L+   L + + ++ ++  K     +   T  + L  P     +L       
Sbjct: 491 TALEDEKQRLEKQRLKASDPAAPALEAKTGATIKGSITLADLLRRPGVRSADLIEHGLVD 550

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            + +  V E  +I+  Y+ Y  RQ  +  ++K + +R +P + DY+++  LS E +EKL+
Sbjct: 551 PELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEAREKLT 610

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            + P N  QAS+I G++ A L  LL++++
Sbjct: 611 AVGPLNFAQASQIPGVSKADLTALLVWLE 639


>gi|168187284|ref|ZP_02621919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
 gi|169294820|gb|EDS76953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
          Length = 632

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/618 (42%), Positives = 385/618 (62%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV VIG GHAGCEAA  +A++G ST +     +++  M CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVAVIGAGHAGCEAALASARIGVSTVVFATDLASVAMMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENL++ Q E+ 
Sbjct: 68  GGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKGKYAERMKHVLETTENLNLKQAEII 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  S
Sbjct: 128 KVDIEDGNVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +       R KTGTPAR++ +T+ + K  +Q  D+ ++PFSFM++ I   QI C +T +
Sbjct: 188 LIDSGIKITRFKTGTPARINRRTVDFSKMIEQKGDDNIVPFSFMSENIEREQISCYLTYS 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ +
Sbjct: 248 GDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K I+GLF 
Sbjct: 308 YVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLKISLEFKNINGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEA  QGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQMNGSSGYEEAGCQGLIAGINAALKLQGKEPLVLKRSDAYIGVLIDDLVTKGTHEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G  +G + E R  +F K  +        LK++ +T+
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTEMGYNIGLVKEDRYIKFIKRKKAIEDEIERLKNIQITN 487

Query: 486 KN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           K         L+S  +      K  + YE +  P+ +   +  +  D  +    V E++ 
Sbjct: 488 KQEVNKFLEGLNSAGLK-----KPISLYELIKRPELNYFVVKDLDKDREELPRDVQEQVN 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ + ++ K  E RLIPK+FDY  +  L  E  +KL  +KP N+ QAS+
Sbjct: 543 IISKYEGYIQKQLEQVEQFKKLENRLIPKEFDYKLVKGLRTEAIQKLDKIKPVNIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLI +++
Sbjct: 603 ISGVSPADISVLLIVLEQ 620


>gi|300774539|ref|ZP_07084402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506354|gb|EFK37489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chryseobacterium gleum ATCC 35910]
          Length = 620

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/618 (45%), Positives = 384/618 (62%), Gaps = 5/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI+  YDVIV+G GHAGCEAAA AA LG+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MISEIYDVIVVGAGHAGCEAAAAAANLGSKTLLITMNMQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G VAD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIVADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRLALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N ++ +V      I+  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKQLIIENNKVTGVVTSLGIEIKGRSVVLTNGTFLNGLIHVGDKQLGGGRMGEPRAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F+ GR+KTGTP R+DG+++ + K E+Q  D+    FS++      +Q+ C
Sbjct: 181 GITEQLVTLGFEAGRMKTGTPPRVDGRSLDYSKMEEQKGDQNPQKFSYLDTPKLTKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN   H I+ E    S +++G I+S GPRYCPSIEDKI RF ERN HQ+F+EPEG 
Sbjct: 241 HIVYTNETVHDILREGFDRSPMFNGTIQSLGPRYCPSIEDKINRFAERNRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE++Q + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 KTVEIYVNGFSSSLPEDVQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLKHTLETKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K ++ D    +R ++YIGV+IDDL +KG 
Sbjct: 361 DNLYFAGQINGTTGYEEAAGQGLIAGINAHNKVHEKDEFILNRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT     LG   E R +R    + E   L   L+ 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADIRLTEKAFNLGLAKEDRLRRVETKVSESQSLEEFLRE 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS---ICPDARKFSSLVIER 535
             L     N    SI      +   A + L+ P+ +++ L     I   + ++S  V E+
Sbjct: 481 TSLKPGIINPVLESIESSPVDQAYRAAQILTRPNMTLEKLDEIDFIKEVSEQYSDEVREQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFDYS L +LS E K+K+S ++P  + QA
Sbjct: 541 AEINIKYKGYIEKEKENVAKLNRLENIKIPEDFDYSKLSSLSAEAKQKMSNVRPKTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYI 613
            +I G++PA +N+LL+Y+
Sbjct: 601 GRISGVSPADINVLLVYL 618


>gi|325970664|ref|YP_004246855.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta sp. Buddy]
 gi|324025902|gb|ADY12661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta sp. Buddy]
          Length = 603

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 254/612 (41%), Positives = 381/612 (62%), Gaps = 17/612 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IV+GGGHAG EA    +++G ST LIT    TIG +SCNPAIGGL KG+LVRE+DA
Sbjct: 2   DYDAIVVGGGHAGIEAGLALSRIGFSTLLITQNLDTIGKLSCNPAIGGLSKGNLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M  + D + IQ+R+LN ++GPAV+ PR QAD+  Y    +  + ++ NL +    V
Sbjct: 62  LGGEMAHLIDHSMIQYRILNRRRGPAVQAPRAQADKFTYARLAKETLEAEHNLALFMDTV 121

Query: 125 AG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + N +  +V      I C  +VLTTGTF+ G I IG+     GR+ +  +  L 
Sbjct: 122 VDILLDDHNRLVGVVTDRRHTITCKVMVLTTGTFMEGRIFIGEYDASNGRLDEPAAIGLG 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  F  GR+KTGTPAR+   ++ +D  E Q  +E ++PFSF  + +    + C IT
Sbjct: 182 SALRRKGFPVGRMKTGTPARVRRSSLDFDTMEVQDGEEHMMPFSFDYNSVDRPALPCYIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +NI  S +Y G I   GPRYCPSIEDK+VRF +R+ HQIF+EPEG+ T+
Sbjct: 242 WTNENTHQIIRQNIHRSPLYGGKIVGKGPRYCPSIEDKVVRFPDRDRHQIFVEPEGVGTE 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NGIS++LPE++QH FI +I GLE   I+RP YA+EYD+I+P+ LFP+LE+K +  L
Sbjct: 302 EMYLNGISSSLPEDVQHAFIHSIAGLEHAQIMRPAYAVEYDFIDPQALFPSLESKLVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NGT+GYEEAA QGL+AGIN+A+K      +  SR ++Y GV+IDDL + G  EP
Sbjct: 362 FIAGQTNGTSGYEEAACQGLMAGINAAQKLKGEKPLVLSRNEAYTGVLIDDLVTMGTQEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR D+ D RLT  G  +G   +   +R  + + + + ++ LL++  L
Sbjct: 422 YRMFTSRAEYRLNLRHDSCDQRLTAKGFAVGLQKQENLERLQEKLAKMDAVKDLLRARRL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             K                +A + L  PD ++ +L +  P+ + +   ++ +++++  Y 
Sbjct: 482 QEK----------------SALQALRMPDLTMSDLVAYIPELKAYEEPILYQVELDVKYE 525

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    +  E  LI ++ +Y ++  LS E KEKL  ++P ++ QA++I G+  
Sbjct: 526 GYINRQDRQVSRFEKLESLLIDENLNYDAIDGLSAEGKEKLKKVRPLSVGQATRINGVRN 585

Query: 604 AALNLLLIYIKK 615
             + +L++++ +
Sbjct: 586 GDIAVLIVHLDR 597


>gi|254851887|ref|ZP_05241235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-503]
 gi|254992367|ref|ZP_05274557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-064]
 gi|300763432|ref|ZP_07073430.1| glucose-inhibited division protein A [Listeria monocytogenes FSL
           N1-017]
 gi|258605182|gb|EEW17790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-503]
 gi|300515709|gb|EFK42758.1| glucose-inhibited division protein A [Listeria monocytogenes FSL
           N1-017]
          Length = 629

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFGLRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|317010491|gb|ADU84238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SouthAfrica7]
          Length = 621

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNRDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQEIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELGENPINDKMDGVS-----LLARDSFNLEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|224498351|ref|ZP_03666700.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes Finland 1988]
          Length = 628

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/619 (42%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T  +   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVDMMLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +R+IPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRSIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|310793204|gb|EFQ28665.1| glucose inhibited division protein A [Glomerella graminicola
           M1.001]
          Length = 690

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/594 (43%), Positives = 364/594 (61%), Gaps = 12/594 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   +G+ SCNP+ GG+GKG ++REIDALDGL GRV D AG+QFRVLN  KGPAV 
Sbjct: 70  LVTPKIENLGTCSCNPSFGGVGKGIILREIDALDGLAGRVIDKAGVQFRVLNRAKGPAVW 129

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI---------ISSIVMQDNS 143
           GPR Q DR+LY+  M+ E+ +  NL ++ G V+   T  N          I+ + ++   
Sbjct: 130 GPRAQIDRKLYQKHMREELETYPNLSIVLGSVSDIVTSANPDTTGSAPSKITGVRLESGE 189

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           ++  S V++TTGTFL   IHIG    PAGR+G+  S  L  S     F  GRLKTGTP R
Sbjct: 190 VLPTSAVIITTGTFLSAEIHIGMKAYPAGRIGEDASFGLSKSLKDAGFRLGRLKTGTPPR 249

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITRTNLETHRIIMENIKHSAI 262
           +   +I +   E+Q  D   +PFSF+ +++    Q+ C ++ TN +TH I+ +N++ +  
Sbjct: 250 IAKDSIDYTHLERQPGDNPPMPFSFLNERVAVEEQMSCHVSYTNEKTHAIVRDNLEKTIH 309

Query: 263 YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
               IK  GPRYCPS+E KIVRF +++ H ++LEPEG ++D+VYPNG+S  +P E Q Q 
Sbjct: 310 IRETIK--GPRYCPSLEAKIVRFSDKDRHIVWLEPEGFDSDLVYPNGLSMTVPPEAQEQI 367

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +R+IPGLE   + + GY +EYDYI+P+ L  TLETK I+GLFLAGQINGTTGYEEAA QG
Sbjct: 368 LRSIPGLENCVMTQVGYGVEYDYIDPRSLKATLETKNIAGLFLAGQINGTTGYEEAAGQG 427

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AGIN+ R +  L     SR D YIG+MIDDL +KGV EPYRMFT+R+EYR++ R DNA
Sbjct: 428 IIAGINAGRSALGLAPAAVSRADGYIGIMIDDLITKGVTEPYRMFTTRSEYRLTSRADNA 487

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G K G + + R   F+   Q+ + L +LL S   +S          K+D   R
Sbjct: 488 DLRLTEQGRKWGVVSDERWAAFSDEKQQISDLMALLSSTSKSSPEWLKQGFQVKEDATRR 547

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
            A + L   + ++  + +  P    F   +  R+ IE++YA +  RQ+ E K    +E  
Sbjct: 548 DATDMLRLRNITMDQVAAAVPGVEAFPERIRSRVHIEATYAPFIKRQLAERKVFARDESL 607

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            +P   DY  +P L+   K  L    P  L QA ++EG+TP+    LL Y+++ 
Sbjct: 608 RLPAWIDYDKVPGLAMAEKAVLKATMPETLAQARRLEGITPSGCVRLLGYVQRQ 661


>gi|159904343|ref|YP_001551687.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889519|gb|ABX09733.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9211]
          Length = 657

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 285/629 (45%), Positives = 382/629 (60%), Gaps = 23/629 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITTAKLGFSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+AD   IQ R+LN  +GPAV   R Q D+  Y   M + + +  NL + +  V
Sbjct: 70  LGGVIGRLADTTAIQKRILNASRGPAVWALRAQTDKRQYVKQMLQLLQNTPNLHLREAMV 129

Query: 125 AGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            G   + N            I  I     S+     V+LTTGTFLRG I IG   + AGR
Sbjct: 130 TGLEVDPNNSKVSNENHTGWIKGIKTYFGSIYLAKAVILTTGTFLRGRIWIGNQSMAAGR 189

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDK 232
            G+ P+  L  +  +  F T RLKTGTPAR+D ++I     E+Q +D     FSF  T  
Sbjct: 190 AGEQPAEGLTEALQELGFQTDRLKTGTPARIDRRSINLHALEEQKSDAANRFFSFDPTAW 249

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            + +QI C ITRT   TH+++ +N++H+ IY G I S GPRYCPSIEDKIVRF ++  HQ
Sbjct: 250 KSGKQISCHITRTTTATHQLVKDNLQHTPIYGGFIDSKGPRYCPSIEDKIVRFSDKESHQ 309

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IFLEPEGL+T  +Y  G ST LPE++Q + ++T+PGLEK  ++RP YA+EYDYI   +L 
Sbjct: 310 IFLEPEGLDTPEIYVQGFSTGLPEKLQLKLLQTLPGLEKCIMLRPAYAVEYDYIPATQLL 369

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+LETKKI GLF AGQ+NGTTGYEEAAAQGLVAGIN+ R   + + + F R +SYIG MI
Sbjct: 370 PSLETKKIKGLFSAGQLNGTTGYEEAAAQGLVAGINATRLIQQKEALHFPREESYIGTMI 429

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL  K + EPYR+ TSR+EYR+ LR DNAD RLTP+G KLG I +RR   F     ++N
Sbjct: 430 DDLVHKDLREPYRVLTSRSEYRLLLRGDNADRRLTPLGHKLGLIDQRRWDIFKA---KHN 486

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE-------FLSYPDFSIQNLFSICPDA 525
            L +  K  + T +  +S SI+ + + +T  A +        L  P   +  L       
Sbjct: 487 ALNN-EKIRLETQRVKASDSIALELEKETGAAIKGSISLANLLRRPGTHMSTLLRYQLIN 545

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 V E ++I+  Y+ Y  RQ  +  +I+ + K+ IP + +Y S+  LS E +EKL+
Sbjct: 546 NDIPLDVREGVEIDIKYSGYLERQKAQVDQIQKQSKKPIPTEINYESITTLSKEAREKLT 605

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           I +P N  +A  I G++ A L  LL+++K
Sbjct: 606 IRRPKNFGEAGLIPGVSKADLTALLVWLK 634


>gi|322515818|ref|ZP_08068762.1| glucose inhibited division protein A [Streptococcus vestibularis
           ATCC 49124]
 gi|322125704|gb|EFX97026.1| glucose inhibited division protein A [Streptococcus vestibularis
           ATCC 49124]
          Length = 633

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/623 (43%), Positives = 384/623 (61%), Gaps = 12/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 6   DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 66  DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQS 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +L
Sbjct: 126 MVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C
Sbjct: 186 ADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG 
Sbjct: 246 WLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK I
Sbjct: 306 ETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-----FLR 475
           LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       +
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLSK 485

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVI 533
             LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + VI
Sbjct: 486 EKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+ PA +++L++Y++ N
Sbjct: 603 QASRISGVNPADISILMVYLEGN 625


>gi|148240756|ref|YP_001226143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 7803]
 gi|205831564|sp|A5GPI1|MNMG_SYNPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147849295|emb|CAK24846.1| Glucose inhibited division protein A [Synechococcus sp. WH 7803]
          Length = 659

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/629 (42%), Positives = 378/629 (60%), Gaps = 20/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAAITSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREAMVT 130

Query: 126 GFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           G   + +                 I+ +     S+     VVLT GTFL G I +G   +
Sbjct: 131 GLEIDGDPAGGGEHWDPSQGPAARITGVRTYFGSLYGAKAVVLTAGTFLGGRIWVGHQSM 190

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF 
Sbjct: 191 AAGRAGEQAAEGLTEALQQLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFD 250

Query: 230 TDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               ++  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++
Sbjct: 251 PAAWSSGEQMSCHITRTTAATHQLIKDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADK 310

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+  
Sbjct: 311 DSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPA 370

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L P+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    + + F R  SYI
Sbjct: 371 TQLLPSLETKRVQGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRAEEAVHFPREGSYI 430

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +
Sbjct: 431 GTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWRLFEDKL 490

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
           Q     +  L+   L   + ++ ++  +     +   T  + L  P     +L       
Sbjct: 491 QAMEAEKQRLEQQRLKVSDPAAPAVEQETGAPIKGSITLADLLRRPGMHAADLVRHGLAD 550

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 V E  +I+  Y+ Y  RQ  +  ++K + +R +P+  DY+S+  LS E +EKL+
Sbjct: 551 AGLPLPVREGAEIDIKYSGYLARQQQQIDQVKRQGRRKLPETIDYASISTLSREAREKLT 610

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++P  L QAS+I G++ A L  LL++++
Sbjct: 611 AVRPLTLGQASQIPGVSQADLTSLLMWLE 639


>gi|21672295|ref|NP_660362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|3913737|sp|O51879|MNMG_BUCAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2827025|gb|AAC38117.1| putative chromosome replication protein [Buchnera aphidicola]
 gi|21622893|gb|AAM67573.1| glucose inhibited division protein A [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 631

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 298/625 (47%), Positives = 401/625 (64%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EAAA +A++G  T L+T K + IG +SCNPAIGG+GK HLV+EID
Sbjct: 7   KNFDVIVIGGGHAGTEAAAASARVGCKTLLLTQKITDIGVLSCNPAIGGIGKSHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM R  D +GIQFRVLN KKGPAVR  R QADR LY   +++ +  + NL +++ E
Sbjct: 67  ALGGLMARAIDYSGIQFRVLNSKKGPAVRSTRAQADRILYCQNIKKLLKKELNLLILETE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q N      +VVL+TGTFL G IHIG     AGR G+  S  L 
Sbjct: 127 VKDLIVKNYQVIGVLTQSNMSFYSRSVVLSTGTFLGGKIHIGLESYSAGRKGEKASIDLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECG 241
                  F   RLKTGTP R+D  TI ++    Q  D     FSFM D I+N   QI C 
Sbjct: 187 LRLRDLPFRVDRLKTGTPPRIDINTINFENLFVQHGDVPTPVFSFMGD-ISNHPLQIPCF 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II +N+  S +Y+G IK  GPRYCPSIEDKIVRF +R  HQIFLEPEGL 
Sbjct: 246 LTHTNEKTHEIIRKNLHKSPLYTGIIKGVGPRYCPSIEDKIVRFPDRKSHQIFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  +YPNGIST+LP ++Q + + ++ GLEK  II PGYA+EYD+ +PK+L  TLE+K I 
Sbjct: 306 SIEIYPNGISTSLPLDVQKEIVSSVKGLEKSKIITPGYAVEYDFFDPKDLNLTLESKWIK 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-ICFSRTD-SYIGVMIDDLTSKG 419
           GLFLAGQINGTTGYEEAA+QGL+AG+N+A  +   DC   F R D +Y+GV+IDDLT++G
Sbjct: 366 GLFLAGQINGTTGYEEAASQGLLAGLNAALSAK--DCKQWFPRRDQAYLGVLIDDLTTQG 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSR+EYR++LR DNAD RLT I  KLG +   R  R+ + +   +  ++ LK
Sbjct: 424 ANEPYRMFTSRSEYRLTLREDNADLRLTEIAYKLGLVDNPRWIRYNEKVLNISNEKNRLK 483

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIER 535
            + +  K+  ST ++   +    K       L  P+ + +NL  +       S L    +
Sbjct: 484 KIKIYPKSSDSTILNQLFNIVLTKEINILNLLKRPEITYENLKYLKNFKVGISDLEAAGQ 543

Query: 536 LQIESSYAAYTGRQMIEA-KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ E  Y  Y  RQ+ E  + +K E   L+P  +DY+ +  LS+E   KL+  KP ++ Q
Sbjct: 544 IENEIKYEGYIKRQLEEINRHLKNENTPLLPT-YDYNKIKGLSHEAVLKLNDYKPVSVGQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPA +++LLI++KK   K
Sbjct: 603 ASRISGITPATISILLIHLKKEYYK 627


>gi|284928804|ref|YP_003421326.1| glucose-inhibited division protein A [cyanobacterium UCYN-A]
 gi|284809263|gb|ADB94968.1| glucose-inhibited division protein A [cyanobacterium UCYN-A]
          Length = 633

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/616 (44%), Positives = 372/616 (60%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GH+GCEAA   ++LG  T ++T     +    CNPAIGG  K  L  E+DAL
Sbjct: 13  FDVIVVGAGHSGCEAALATSRLGCKTLMLTLNLDRVAWQPCNPAIGGPAKSQLAHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G+V D   +Q R+LN  +GPAV   R Q D+  Y  AM+  I +QENL++ +G V 
Sbjct: 73  GGEIGKVTDLTYLQKRILNASRGPAVWALRAQVDKREYSAAMKAIIENQENLNIREGMVT 132

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +N  I  +     S      V+L TGTFL G I IG   + AGR G+ PS +L N
Sbjct: 133 DLVLGRNDEIRGVQTYFGSCFAAKAVILATGTFLGGQIWIGDKSMDAGRAGEFPSINLTN 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           +  +  F+T RLKTGTPAR+D +++ + + E Q  D+ L  FSF  +  I   Q+ C +T
Sbjct: 193 TLKQLGFETERLKTGTPARIDKRSVDYSQLEPQPPDKNLKWFSFDPNFWIEKEQMNCYLT 252

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETH++I +N+  S IY G +KS GPRYCPSIEDKIVRF ++N HQIF+EPEG  T 
Sbjct: 253 RTTPETHKLIQDNLHLSPIYGGFVKSKGPRYCPSIEDKIVRFADKNSHQIFIEPEGRETP 312

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST LPE IQ   ++T+PGLEK  ++RP YA+EYD++   +  PTL TKKI GL
Sbjct: 313 ELYVQGFSTGLPENIQSAMLKTLPGLEKCVMLRPAYAVEYDFLPATQCKPTLMTKKIEGL 372

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG+VAGIN+A+     + I FSR DSYIG +IDDL +K + EP
Sbjct: 373 FCAGQINGTTGYEEAAAQGIVAGINAAKFIKNEEMIIFSREDSYIGTLIDDLCTKDIREP 432

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTP+G ++G I   R   F K  ++ N L   ++   +
Sbjct: 433 YRMLTSRSEYRLILRSDNADERLTPLGRRIGLIDNYRWHLFQK--KQKNILEEKIRLSKV 490

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K      I   +D +       T  + L  P    +NL          +    E ++I
Sbjct: 491 RIKEKDEIGIRLIKDTQQNIKGAITLADLLKRPKIHYKNLEQYGLGNNNLTVGEKEGVEI 550

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y+ Y  RQ  + +++K    R +P D DY ++  LS E +EKL+ + P  + QAS+I
Sbjct: 551 NIKYSGYLKRQQNQLEQVKRYSDRNLPTDIDYMNIETLSMEAREKLTKVSPLTIGQASRI 610

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA  N LLIY++
Sbjct: 611 GGVSPADTNALLIYLE 626


>gi|256370606|ref|YP_003108431.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009398|gb|ACU52758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri SMDSEM]
          Length = 622

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/626 (44%), Positives = 390/626 (62%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIV+GGGH+G EAA  A+ LG+ T LIT     I  MSCNPA+GG+ KG +++
Sbjct: 1   MFDHKYDVIVVGGGHSGSEAALAASNLGSKTLLITTNIYNIAQMSCNPAMGGIAKGQIIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +    NL++ 
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLILKKNYNLNLY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + N +  +       I+  +V+LT GTFL G+IHIGK +   GR+ ++   
Sbjct: 121 QDTVIDLIIKNNKVIGVKTILGITIQSKSVILTNGTFLNGIIHIGKKQKSGGRIYENSVK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QI 238
            L     +F   +GR+KTGT  RLDGK++ + K  +Q  D  + PFSF++ K   R  Q 
Sbjct: 181 GLTEKLKQFGLISGRMKTGTSPRLDGKSLDYSKMIEQLGDSPIEPFSFLSKKKRMRIKQK 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +C +T TNLETH+++ +    S I++G IK  GPRYCPSIE+KI RF  ++ HQIF+EPE
Sbjct: 241 KCYLTYTNLETHKLLRDKFNLSPIFNGHIKCVGPRYCPSIEEKIYRFSNKDNHQIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST++PEE+Q++ + TIPG EK  ++RPGYAIEYDY  P +L   LE+K
Sbjct: 301 GWNTQEVYINGFSTSMPEEVQYKALITIPGFEKAKMVRPGYAIEYDYFYPTQLKINLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI  LF AGQINGTTGYEEAAAQGL+AGIN+  K N+ D +   R ++YIGV+IDDL  K
Sbjct: 361 KIENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKDPLILKRNEAYIGVLIDDLIYK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA---KYIQE-YNFL 474
           G  EPYRMFTSRAEYRI LR DNAD RLTP+G KLG +   R K+     K++++ ++F 
Sbjct: 421 GTEEPYRMFTSRAEYRILLRQDNADERLTPMGEKLGLVNYERIKKLELKNKHLKKCFSFF 480

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQ-----NLFSICPDARKFS 529
           +       L +K L   S   K++ K     +FLS P+ SI+     +L        K +
Sbjct: 481 KRKTIKFELANKFLKK-SFLIKENIKLG---DFLSRPEISIEEIKKLSLVKNFLKKNKIN 536

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +++ + +   Y  Y  ++    K++   E   IP +F+Y  + +LS E KEKL   KP
Sbjct: 537 KKILDLISLRIKYKGYFKKEEENVKKMSKLENLKIPINFNYKKIKSLSIEAKEKLINYKP 596

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            ++ +A KI G++P+ +++L+++++K
Sbjct: 597 NSIGEALKISGVSPSDISILILFLRK 622


>gi|154483916|ref|ZP_02026364.1| hypothetical protein EUBVEN_01622 [Eubacterium ventriosum ATCC
           27560]
 gi|149735407|gb|EDM51293.1| hypothetical protein EUBVEN_01622 [Eubacterium ventriosum ATCC
           27560]
          Length = 626

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/620 (43%), Positives = 383/620 (61%), Gaps = 11/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+++G GHAGCEAA  +A+LG +T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 7   NYDVVIVGAGHAGCEAALASARLGLNTIVFTVSVDSIALMPCNPNIGGTSKGHLVRELDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + ENL + Q EV
Sbjct: 67  LGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKQDYTREMRKTLENTENLTIRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E  +I  +     +     +VVL TG +L+     G +    G  G   +N+L  
Sbjct: 127 AKLLVEDGVIKGVETVSGATYYAKSVVLATGVYLKAKCIYGDVCQYTGPNGLMAANNLTA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGI 242
           S ++      R KTGTPAR+D K+I + K E+QF DER++PFSF TD   +   QI C +
Sbjct: 187 SLIENGIKVRRFKTGTPARVDKKSIDFSKMEEQFGDERVVPFSFSTDPESVQKDQISCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II ENI  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL T
Sbjct: 247 TYTNEKTHEIIRENINRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGLFT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q+   +T+PGLE V I+R  YAIEYD I   +L P LE KKI G
Sbjct: 307 NEMYLGGMSSSLPEDVQYAMYKTVPGLENVKIVRNAYAIEYDCIEYGQLLPNLEFKKIKG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NG++GYEEAAAQG++AGIN+AR     + I   R+ +YIGV+IDDL +K   E
Sbjct: 367 LFSAGQFNGSSGYEEAAAQGIIAGINAARYVQNKESIVLDRSQAYIGVLIDDLVTKESHE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYRM TSRAEYR+ LR DNAD RLT IG ++G +    Q+R+    ++   +   ++ L 
Sbjct: 427 PYRMMTSRAEYRLLLRQDNADLRLTKIGYEVGLVP---QERYNYVCEKEKMIEKEIERLE 483

Query: 482 ---VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              V  +K + S   S+         T  E +  P+     +  +  + +  +  VIE++
Sbjct: 484 NYKVGANKEVQSVLESLGSTTLKTATTLAELIRRPELDYDKIKPLDKERQPLNYDVIEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y+ Y  RQ  + +  K  E + IP+ FDY+ + +L  E  +KL   +P N+ QAS
Sbjct: 544 NINIKYSGYISRQKKQVENFKKIENKKIPEGFDYTKVNSLRKEAVQKLEFYRPINIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G++PA +++LLIY++++
Sbjct: 604 RISGVSPADISVLLIYMEQH 623


>gi|227500994|ref|ZP_03931043.1| glucose-inhibited division protein A [Anaerococcus tetradius ATCC
           35098]
 gi|227216767|gb|EEI82165.1| glucose-inhibited division protein A [Anaerococcus tetradius ATCC
           35098]
          Length = 629

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/616 (43%), Positives = 377/616 (61%), Gaps = 8/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEA   A++LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 10  SYDVIVVGAGHAGCEAGLAASRLGLKTLILTTSMESIADMPCNPNIGGTGKGHIVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  ++ +D+ + EV
Sbjct: 70  LGGQMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRAYHDEMKKTL--EDEVDLFEQEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N +   I S      ++  C  +++ TGT+L G I IG+ +  +G  G S +  L +
Sbjct: 128 DKINYKDGKIVSCETVQGAIFECKALIICTGTYLNGKILIGEYEKVSGPHGLSAATFLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           S  +  F+  R KTGTPAR+D K++  +KTE Q  D+ +IPFSF+    D     Q +C 
Sbjct: 188 SLREMGFELRRFKTGTPARVDRKSLHLEKTEVQKGDKEVIPFSFLNEGEDFSHRHQEDCY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET  IIMEN+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL 
Sbjct: 248 LTYTRPETKEIIMENLYRSPIYGGHIKGIGPRYCPSIEDKMVRFPDRDVHQVFIEPEGLT 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ ++L+ TLE+K   
Sbjct: 308 TDEMYIQGVSSSLPQEVQFDFYKTIVGLEDVKIMRPAYAIEYDMIDTRKLYRTLESKDYE 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K      +   R+D+YIGV+IDDL ++G  
Sbjct: 368 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEKPLILDRSDAYIGVLIDDLVTEGTK 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RLT +G  +G + E R ++        +     LKS+
Sbjct: 428 EPYRMMTSRCEYRLTMRQDNADQRLTKLGYDIGLVSEERYQKMLAKRNAIDCEIERLKSV 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            LT K  ++  +        +     Y+ L  P+     L +  PD  +       ++Q 
Sbjct: 488 SLTPKAETNQKLEELNTSPLKNGISLYDLLKRPEVDYDMLEAFDPDRPQLPKFQQIQVQT 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +QM +  + K  E + + K+ DY  +P L  E  EKL+ ++P ++ QAS+I
Sbjct: 548 EIKYEGYIKKQMADIDKFKKLEGKKLAKNIDYFKIPGLKKESCEKLNEIQPESIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G++PA +N+LLI +K
Sbjct: 608 SGVSPADINVLLIRLK 623


>gi|34101970|gb|AAQ58337.1| glucose inhibited division protein A [Chromobacterium violaceum
           ATCC 12472]
          Length = 605

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/598 (44%), Positives = 373/598 (62%), Gaps = 10/598 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR LN  
Sbjct: 1   MGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDIGGIQFRTLNAS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   +       R
Sbjct: 61  KGPAVRATRAQADRILYKAAIREMLENQPNLTLFQQPVDDLLIEGDRVVGAITAIGITFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TVVLT GTFL G IH+G      GR GD  +++L     + +   GRLKTGTP R+DG
Sbjct: 121 AKTVVLTAGTFLSGKIHVGLENYTGGRAGDQAASTLGERLRELNLPVGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +   E+Q  D     FS+   +  + +Q+ C IT TN  TH II      S +++G
Sbjct: 181 RSVDFSVMEEQPGDTPEPVFSYRGKRAMHPKQLPCWITHTNERTHDIIRSGFDRSPMFTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T   YPNGIST+LP +IQ   +R+
Sbjct: 241 VIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTHEFYPNGISTSLPFDIQLAAVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYDY +P+ L  +LETK I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 IRGMENAHILRPGYAIEYDYFDPRGLKASLETKAIQGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+   + + +  C  R ++Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 361 GLNAGLFAREQEAWCPRRDEAYLGVLVDDLITKGVSEPYRMFTSRAEFRLQLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK----T 501
           LT +G KLG +G+ +   F +        ++ L++  L    L+  +   +  GK     
Sbjct: 421 LTEMGRKLGVVGDEQWDAFCRKRDAVEAEKARLQATWLHPSKLADPAALARVLGKPIERE 480

Query: 502 RTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQIESSYAAYTGRQMIE-AKEIK 557
            T  + L  P+   + L ++      A + +  V E+++I+  Y  Y  RQ  E A+   
Sbjct: 481 YTLQDLLKRPNVPYRELMTVPEAADGAPELADEVAEQVEIQVKYQGYINRQNEELARRDN 540

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            E+ RL P D DY  +  LS E+++KL+  +P  L QAS+I+G+TPAA+ LL++++++
Sbjct: 541 LEDIRL-PGDIDYGLVKGLSKEVQQKLNQQRPETLGQASRIQGITPAAVALLMVHLRR 597


>gi|187777373|ref|ZP_02993846.1| hypothetical protein CLOSPO_00929 [Clostridium sporogenes ATCC
           15579]
 gi|187774301|gb|EDU38103.1| hypothetical protein CLOSPO_00929 [Clostridium sporogenes ATCC
           15579]
          Length = 625

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 389/620 (62%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEKNVILRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E + +  I+ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IQIDVEDHKVKGILTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +TH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEQTHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAGINS  K    D +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLVAGINSVLKIKGEDPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        LK++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKIGLVKEDRYDKFLNRKKNVESEVERLKNVQIT 486

Query: 485 SKN------LSSTSISFKQDGKTRTAYEFLSYPD---FSIQNLFSICPDARKFSSLVIER 535
            K       L   S   K   K  + YE +  P+   F ++ L    PD    S    E 
Sbjct: 487 GKREINEFLLEKGSTELK---KPISLYELIKRPELDYFKVEPLDDKRPD---LSDDEKEE 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QA
Sbjct: 541 INIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYPDVKGLRLEAIQKLEKIKPINIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLIY+++
Sbjct: 601 SRISGVSPADISVLLIYMER 620


>gi|255521613|ref|ZP_05388850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-175]
          Length = 629

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/619 (42%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QA +I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQARRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|308270192|emb|CBX26804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [uncultured Desulfobacterium sp.]
          Length = 635

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 380/617 (61%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +++YD+IV+G GHAGCEAA  AA++G S  L+      + +M C+P++GG+ KG LV+
Sbjct: 3   LYSKNYDIIVVGAGHAGCEAALSAARMGCSVLLVAIDLDKLAAMPCSPSVGGMAKGQLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M R++D + IQ+R LN KKGPAV   RTQ D+  Y  AM+  +  Q  LD+ 
Sbjct: 63  EVDALGGEMARISDKSAIQYRTLNTKKGPAVHSSRTQNDKLRYHTAMKAVVEKQPGLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   I+ I+           VVL TGTFL G+IHIG   + AGR G+  S 
Sbjct: 123 QVFVERLLVENGKITGIIDYTGYCYMAKAVVLATGTFLSGLIHIGANSMKAGRAGEFASY 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F+ GR+KTGTP RL   +I +    +Q ++    PFSF T+ I+  Q+  
Sbjct: 183 SLAQNLKELGFNLGRMKTGTPPRLHKSSIDFTVFSRQDSESDPTPFSFFTNSISLPQMPS 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  T+++T  I+++N+K SA+Y G IK    RYCPS EDKIV+F ER  H + LEPEGL
Sbjct: 243 YMGHTSVKTREIVLKNLKFSALYGGIIKGVSARYCPSFEDKIVKFPERETHHVILEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y +G+  +LP EIQ Q +R+I GLE+  IIRP YAIEYDYINP  L  TLETK I
Sbjct: 303 DTEEIYASGLGNSLPVEIQIQLVRSIKGLEEAQIIRPAYAIEYDYINPVNLKQTLETKLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGT+GYEEAAAQGL AGIN++    K       R+ +YI VM+DDL +KG 
Sbjct: 363 SGLFLAGQINGTSGYEEAAAQGLWAGINASCLVQKRPPFILDRSQAYIAVMVDDLVTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYR+ LR DNAD RL   G +LG I +   K   +  ++     + +KS
Sbjct: 423 LEPYRMFTSRAEYRLMLREDNADLRLMEAGHELGLIDDDTIKELNERRKQIQAETARIKS 482

Query: 481 LVLT-SKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +V+  SK ++    S   +      Y  + L         +  +          V ++++
Sbjct: 483 VVIKPSKEVNLFLESRGTNPIDNGVYLDQLLKRTQLDYSAVCVLAGGCENIDPKVSKQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  E  + K  E+  I + FD+S +  LSNELKEKL+ +KP +L QAS+
Sbjct: 543 IGVKYEGYIERQQKEIDKFKNLERIKIKEGFDFSHVHGLSNELKEKLNEIKPASLGQASR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           I+GMTPAA+++L+I +K
Sbjct: 603 IDGMTPAAVSVLMIALK 619


>gi|311745075|ref|ZP_07718860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Algoriphagus sp. PR1]
 gi|126577588|gb|EAZ81808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Algoriphagus sp. PR1]
          Length = 621

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/620 (44%), Positives = 382/620 (61%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AAK+G+   L T   +TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVVGAGHAGCEAAHAAAKMGSKVLLCTMNMNTIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G+ G ++D + IQFR+LN  KGPA+  PR+Q DR    E +RLA++R      N+D  Q
Sbjct: 65  GGMSGIISDKSMIQFRMLNRSKGPAMWSPRSQNDRMRFAEEWRLALER----TPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             + G   +   +  +       I   +VVLT GTFL G+IHIG+ +   GR G+S +  
Sbjct: 121 EMITGIIEKDGRVKGVKTGIGIEIEAKSVVLTNGTFLNGLIHIGEKQFGGGRTGESAAKG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           +    +   F++GR+KTGTP R+DG+++ + K E Q+ DE    FS+ +D+ +    Q  
Sbjct: 181 ITEQLVSLGFESGRMKTGTPPRVDGRSLDYSKMEVQYGDENPEKFSY-SDETSPIKEQRT 239

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN E H  + E    S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG
Sbjct: 240 CWITYTNKEVHSTLEEGFDRSPMFNGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEG 299

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q++ I+ I G E   + RPGYAIEYD+  P +L  TLET+ 
Sbjct: 300 WNTVEIYVNGFSTSLPEDVQYKAIQKITGFENAKMFRPGYAIEYDFFPPTQLKLTLETQL 359

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + D     R+D+YIGV+IDDL +KG
Sbjct: 360 VEGLYFAGQINGTTGYEEAASQGLIAGINASLKVQEKDPFLLKRSDAYIGVLIDDLINKG 419

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT +G  L    + R  +     Q    L + LK
Sbjct: 420 TEEPYRMFTSRAEFRLLLRQDNADLRLTELGYNLNLASQERFDKMQSKKQNTAKLINDLK 479

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK----FSSLVI 533
              L  + ++    ++   +  +  +  + L  P   +  +  + PD  K    F   V 
Sbjct: 480 QKKLAPEQINKGLEALGTAEIKEKISLEKLLKRPQLGLDQMMDLDPDISKFLEGFPKDVR 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +++  Y +Y  ++     ++   E   IP  FDY ++PALSNE K+KL  +KP  L 
Sbjct: 540 EQAEVQIKYDSYIEKEQQMVNKLSNMENFKIPLKFDYLTIPALSNEGKQKLHKIKPETLG 599

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA L++L +Y+
Sbjct: 600 QASRISGVSPADLSILTVYL 619


>gi|325979483|ref|YP_004289199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325179411|emb|CBZ49455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 634

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/617 (43%), Positives = 378/617 (61%), Gaps = 8/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L +L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLSTLK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQ 537
           +      N    ++ FK      TA EF+  P+  + I   F + P   K  S VIE L+
Sbjct: 488 IKPVKETNARIEALGFKTLTDALTAKEFMRRPEINYDIATSF-VGPAEEKLDSKVIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++L++Y++
Sbjct: 607 ISGVNPADISILMVYLE 623


>gi|262066109|ref|ZP_06025721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380204|gb|EFE87722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
          Length = 633

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/630 (43%), Positives = 379/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    + +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGRKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+D +TI +   E+Q  D+ +++ FS  T   + ++ 
Sbjct: 182 EDLPLSLEKVGLKLGRFKTGTPARIDARTIDFSVLEEQPGDKSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNDKVHEIIKNARERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + I+ + G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIKNLQGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRSIDNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ IG +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKIGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N        K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILTRTSVGPSNPRVNETLLKRGENPIKDGS--TLLELLRRPEVTFKDIEYISEEIKGVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|41058559|gb|AAR99261.1| glucose-inhibited division protein A [Candidatus Blochmannia
           festinatus]
          Length = 621

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 285/630 (45%), Positives = 384/630 (60%), Gaps = 48/630 (7%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGGHAG EAA  A+ L  +T LITH   T+G MSCNP+IGG+GKGHLV+E+DA+ G+M 
Sbjct: 1   IGGGHAGTEAALAASTLQCNTLLITHNIDTLGQMSCNPSIGGIGKGHLVKEVDAMGGVMA 60

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
              D  GIQFR+LN  KG AV+  R QAD+ LYR  +++ + +Q  L ++Q  V      
Sbjct: 61  SAIDQPGIQFRILNSSKGAAVKSTRAQADKILYRQIIRKYLENQNYLYILQASVEDVIVS 120

Query: 131 KN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS-FMK 188
           +N II  ++ +  + I   +VVLTTGTFL G I+IG      GR GD  S+SL +    +
Sbjct: 121 QNRIIGVVIPKIEAKIYAKSVVLTTGTFLNGKIYIGMKNFHGGRAGDLESSSLLSKKLQE 180

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNL 247
                 RLKTGT  R+  K + +     Q++D+ +  FSF+ + K   +QI C IT TN 
Sbjct: 181 LSLRMSRLKTGTSPRIHSKGVNFKCMFAQYSDDPVPVFSFLGSSKQHPKQIPCYITHTNS 240

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  N+ +S +Y+G I    PRYCPSIEDKI RF ++  HQIFLEPEGL T  +Y 
Sbjct: 241 KTHDIIRSNLNYSPVYAGLISGIPPRYCPSIEDKITRFSDKKTHQIFLEPEGLTTSEIYL 300

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGI+T+LP  IQ Q +++I GLE  +I+RPGYAIEYD+ NP +L  TLE+K ISGLFL+G
Sbjct: 301 NGIATSLPFHIQVQIVQSIKGLENAHILRPGYAIEYDFFNPVDLKLTLESKLISGLFLSG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL++GIN+AR +         R  +Y+GV++DDL + G  EPYRMF
Sbjct: 361 QINGTTGYEEAAAQGLLSGINAARYAQNKSEWYPRRDQAYLGVLVDDLCTHGAKEPYRMF 420

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK-----------RFAKYIQEYNF--- 473
           TSRAEYR+SLR DNAD RLT I  KLG I + R K            F K    Y F   
Sbjct: 421 TSRAEYRLSLREDNADLRLTNITRKLGLINDNRWKTFCVKQENIEREFQKLRNTYIFPNT 480

Query: 474 -----LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------ 522
                L ++LKS +LT+K                +  + L  P+ +   LF +       
Sbjct: 481 TDAMKLNNILKSSLLTNK---------------LSGEKLLKRPEINYSTLFQLSVFKPAI 525

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
           PD +     V E+++I+  YA Y  RQ  E  +    E  ++P D +Y  +  LS E+ +
Sbjct: 526 PDNQ-----VYEQIEIQVKYAGYLHRQQEEINKYLRNENTVLPADINYHDISGLSIEVID 580

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIY 612
           KL   +P+++ QAS+IEG+TPAA++ LLI+
Sbjct: 581 KLDYYRPYSVGQASRIEGITPAAISNLLIW 610


>gi|306832458|ref|ZP_07465610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425358|gb|EFM28478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 634

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/628 (43%), Positives = 384/628 (61%), Gaps = 11/628 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L +L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLSTLK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQ 537
           +      N    ++ FK      TA EF+  P+  + I   F + P   K  S VIE L+
Sbjct: 488 IKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSF-VGPAEEKLDSKVIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYI---KKNTVKLNE 622
           I G+ PA +++L++Y+   +K+  K+N+
Sbjct: 607 ISGVNPADISILMVYLEGKQKHHRKVND 634


>gi|254415371|ref|ZP_05029132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177846|gb|EDX72849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcoleus chthonoplastes PCC 7420]
          Length = 648

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/617 (42%), Positives = 371/617 (60%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA  AA+LG  T L+T     I    CNPA+G   K  L  E+DA
Sbjct: 12  AFDVIVVGAGHSGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGAPAKSQLAHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+R + +QENL + +G V
Sbjct: 72  LGGEIGKMADRTYLQKRVLNQSRGPAVWALRAQTDKREYAAVMKRIVENQENLVIREGMV 131

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  N  +  +        +   V+LTTGTFL G I +G   + AGR G+  +  L 
Sbjct: 132 TDLVLGANDQVIGVQTYFGVAFQAPAVILTTGTFLGGCIWVGNKSMSAGRAGEFAAVGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
            +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF  +    R Q+ C I
Sbjct: 192 ETLNRLGFETGRLKTGTPARVDKRSVDYSKMEPQPGDEVVSWFSFDPEVWVEREQMNCYI 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  +TH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 252 TRTTAQTHQLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKQSHQIFIEPEGRDI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + FPTL TKKI G
Sbjct: 312 PELYIQGFSTGLPENLQLQMLRSLPGLEHCTMLRPAYAVEYDYLPATQCFPTLMTKKIEG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+ R     + + F R +SYIG +IDDL +K + E
Sbjct: 372 LFCAGQINGTTGYEEAAAQGIVAGINAVRYVRHQEMLVFPREESYIGTLIDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + + +  ++ N      +   
Sbjct: 432 PYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWQLYTE--KQANIAAEKERLQT 489

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +  K      ++   D + R     T  E L  P F   NL          +    +  +
Sbjct: 490 VRIKEHEELGVAIASDTQQRIKGSITLAELLRRPKFHYTNLDHYGLGNSSLNQAERDGAE 549

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  +  ++  + +R +P D DY ++  LS E +EKLS ++P  + QAS+
Sbjct: 550 IDIKYAGYLQRQQNQIDQVSRQSQRRLPTDLDYDAIETLSKESREKLSQVQPLTIGQASR 609

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LL+Y++
Sbjct: 610 IGGVNPADINALLVYLE 626


>gi|291558323|emb|CBL35440.1| glucose-inhibited division protein A [Eubacterium siraeum V10Sc8a]
          Length = 625

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/614 (44%), Positives = 379/614 (61%), Gaps = 9/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  L  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQLTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G IK  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIKGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYIPDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LLKSL 481
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF   ++  N L +    + K+ 
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRF---LERKNILDNETSRIKKAT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   + L+    S      T+     E L  P    ++L     +A +    +I++L+I 
Sbjct: 484 IYPCEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLAQFDENAPELEHDIIDKLEIN 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I 
Sbjct: 544 IKYEGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKYRPLNIGQAGRIS 603

Query: 600 GMTPAALNLLLIYI 613
           G+ PA +++LLI++
Sbjct: 604 GVNPADVSVLLIWL 617


>gi|171778577|ref|ZP_02919704.1| hypothetical protein STRINF_00556 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282800|gb|EDT48224.1| hypothetical protein STRINF_00556 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 632

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/616 (43%), Positives = 378/616 (61%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R +R+    ++++   + L SL 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDEERYERYLNRKRQFDKELTRLSSLK 487

Query: 483 ---LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N    ++ FK      TA EF+  P+ + +   S + P   K  S V+E L+ 
Sbjct: 488 IKPIKETNARIEALGFKPLTDALTAKEFMRRPEINYEIATSFVGPAEEKLDSKVVELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +++L++Y++
Sbjct: 608 SGVNPADISILMVYLE 623


>gi|325265450|ref|ZP_08132173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. D5]
 gi|324029308|gb|EGB90600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. D5]
          Length = 630

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/617 (43%), Positives = 383/617 (62%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 15  YDIAVVGAGHAGCEAALAAARLGFKTVIFTVSVDSIALMPCNPNIGGSSKGHLVREVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKANYSRTMRQVLQNQKNLDIRQMEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  ++ +     ++ RC  VVL TGT+L+     G +    G  G   +N L +S
Sbjct: 135 DILAEEGRVTGVQTYSGAIYRCRAVVLCTGTYLKARCIYGDISTYTGPNGLQAANHLTDS 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                    R KTGTPAR+D  ++ + K E+Q  DER++PFSF TD   +   Q  C +T
Sbjct: 195 LKSLGIKMYRFKTGTPARIDKNSVDFSKMEEQKGDERVVPFSFTTDPEAVQIEQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL T+
Sbjct: 255 YTNQNTHDIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFSDKNRHQVFIEPEGLETN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++PGLE V I+R  YAIEYD I+ ++L  TLE K + GL
Sbjct: 315 EMYVGGMSSSLPEDVQYAMYRSVPGLENVKIVRNAYAIEYDCIDARQLKSTLEFKNVEGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGLVAGIN+ARK  +   I   R+  Y+GV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAAAQGLVAGINAARKLQEKQGIVIDRSQGYVGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YRM TSRAEYR+ LR DNAD RLT +G ++G + E   +R+ K + + N +   ++ +  
Sbjct: 435 YRMMTSRAEYRLLLRQDNADLRLTKLGYEVGLVDE---ERYQKLLDKENMIEEEIRRVEH 491

Query: 482 --VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             + TS+ + S   S+     T   T  E +  P+ S + L  I    ++    V E++ 
Sbjct: 492 TNIGTSEEVQSLLESYGSTPLTSGTTLAELIRRPELSYEALAPIDRQRKELPFDVEEQVN 551

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  + ++ K  E R+IP D DY+ + +L  E K+KL+ ++P ++ QAS+
Sbjct: 552 INIKYDGYIRRQQRQVEQFKKLETRIIPDDLDYNDVKSLRIEAKQKLTEMRPSSIGQASR 611

Query: 598 IEGMTPAALNLLLIYIK 614
           I G++PA +++LL+Y++
Sbjct: 612 ISGVSPADISVLLVYLE 628


>gi|284005465|ref|NP_001164763.1| protein MTO1 homolog, mitochondrial [Oryctolagus cuniculus]
 gi|217030840|gb|ACJ74004.1| mitochondrial translation optimization 1 homolog isoform a
           (predicted) [Oryctolagus cuniculus]
          Length = 678

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/630 (44%), Positives = 411/630 (65%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +  K  +S +V+ D S +   +V+LTTGTFLRG + IG    PAGR+GD 
Sbjct: 157 DLILSEPEPEHPGKCRVSGVVLVDGSTVYADSVILTTGTFLRGTVVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D+   PFSF+ + +  + 
Sbjct: 217 PSIGLAQTLEKLGFAVGRLKTGTPPRIAKESINFSILNKQTPDDPPKPFSFINETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN +   I++EN+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYMTHTNPKVDEIVLENLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGLDSDLIYPQGLSVTLPAELQEKMIACIRGLEKAKMIQPGYGVQYDYLDPRQISPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G  + GC+ ++R +R          
Sbjct: 454 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTFRGYEEAGCVSQQRYERACWMKSSLEE 513

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S    + +   SIS  +     +A + L + +  +++L  + PD  +K+
Sbjct: 514 GISVLKSIEFSSYKWKQLIPEASISITKSHPV-SALDVLKHEEVDMESLAKVVPDLFKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS E++EKL
Sbjct: 573 TQCRELAERLKIEAAYESVVFHQLQEIKEVQRDETLQLPKDLDYLTIKDVSLSQEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIVNLLRFVK 662


>gi|78356852|ref|YP_388301.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|123552447|sp|Q310P0|MNMG_DESDG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78219257|gb|ABB38606.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 628

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/614 (43%), Positives = 363/614 (59%), Gaps = 3/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++V+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 12  FDLVVVGAGHAGCEAAMASARLGLKTLLLTINADRIGHLSCNPAIGGLAKGHMVKEIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR+LN  KGPAV   R Q DR+ Y  A+QR++  Q+NL V Q    
Sbjct: 72  GGMMGLWADEAGIQFRLLNTSKGPAVHSTRAQIDRDAYMKAVQRDVFRQDNLWVWQDTAE 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +        R   V +T GTF+ G+IH+G      GR+GD  +  L  S
Sbjct: 132 NVLVENGRAAGVSTLLGQEFRSRAVCVTAGTFMSGLIHVGLTHFSGGRLGDPAAQGLSAS 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +D   +Q  D    PFSF +      Q+ C +T T
Sbjct: 192 LRAVGLELGRLKTGTTPRLLRDSINFDVMVEQPGDNPPRPFSFRSRHARMPQVPCYLTWT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I   G RYCPSIEDKI RF +++ HQIF+EPEGL++  V
Sbjct: 252 NEATHEAIRAGFDRSPMFTGIISGTGARYCPSIEDKIARFPDKDRHQIFIEPEGLHSPEV 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP GI T+LP ++Q   I TIPGLEK  I+RPGYAIEYDY NP +L PTLETK + GL++
Sbjct: 312 YPGGIPTSLPLDVQKAMIATIPGLEKAQIVRPGYAIEYDYANPTQLKPTLETKVLPGLWM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL A +N       L      R ++Y+ V++DDL +KG LEPYR
Sbjct: 372 AGQVNGTSGYEEAAAQGLWAALNIFCGLRGLPAFIPGRDEAYMAVLVDDLVTKGTLEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           MFTSRAE+R+ LR +NAD+RLTP G  LG + + + + + AK       L  L    V  
Sbjct: 432 MFTSRAEHRLLLRENNADSRLTPAGRSLGLVDDAQWQLYTAKKTALEQLLAELDARQVRP 491

Query: 485 SKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
                   +   +   TR+    + L  P   I +L +   +   F++ V+E  Q    Y
Sbjct: 492 DAATRDIFVHMNEAVPTRSVSLADLLRRPALGITDLQAFGLETDGFAADVLEEAQTIVKY 551

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ          E  +I +  DY+++  L+ E  EKLS ++P  L QA++I G+T
Sbjct: 552 SGYLKRQEELVLRTARHESVVISEAADYAAVHGLTREAVEKLSKVRPRTLGQAARISGIT 611

Query: 603 PAALNLLLIYIKKN 616
           PAAL+ + +Y+KKN
Sbjct: 612 PAALSCIEVYLKKN 625


>gi|17231053|ref|NP_487601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nostoc sp. PCC 7120]
 gi|21263666|sp|Q8YR87|MNMG_NOSS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|17132694|dbj|BAB75260.1| glucose inhibited division protein A [Nostoc sp. PCC 7120]
          Length = 640

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/618 (42%), Positives = 377/618 (61%), Gaps = 11/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  AFDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV----I 120
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL +    +
Sbjct: 72  LGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAIMKNIVENQENLSIRESMV 131

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
              V G N E   +  +        +C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 132 TDLVLGANDE---VIGVETYFGVAFQCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K + Q  D  +  FSF  D    R Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSKMQLQPGDAEVRWFSFDPDVWVEREQLP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHMTRTTPETHRLIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFVDKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 369 IAGLFCAGQVNGTTGYEEAAAQGIVAGINAARFVRDEEMIVFPREHSYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +  ++    +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWQMFTRKQEQITGEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +I+       +   T  + L  P F   +L        + +    E  
Sbjct: 489 ATRVKENDDVGKAIASNTQQAIKGSITLADLLRRPGFHYVDLDRYGLGNPELTPAEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  + +R +P D DY+++  LS E +EKL+ +KP  + QA+
Sbjct: 549 EIDIKYSGYLARQQSQIEQIARQAQRQLPGDLDYTTVDTLSKEAREKLNKVKPLTIGQAA 608

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ PA +N LLIY++
Sbjct: 609 RIGGVNPADINALLIYLE 626


>gi|255717599|ref|XP_002555080.1| KLTH0G00924p [Lachancea thermotolerans]
 gi|238936464|emb|CAR24643.1| KLTH0G00924p [Lachancea thermotolerans]
          Length = 682

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/612 (43%), Positives = 387/612 (63%), Gaps = 29/612 (4%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L+T     IG+ SCNP++GG+GKG L+RE+DALDG+  +V D AGIQF++LN  +G A
Sbjct: 65  TVLVTPFLDKIGTCSCNPSMGGVGKGTLLREVDALDGVAPKVTDLAGIQFKMLNRSRGAA 124

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-------------ISSI 137
           V GPR Q DRE+Y   MQ+ + S  NL + QG+V     ++ +             +  +
Sbjct: 125 VWGPRAQIDREIYLREMQKVLKSYANLTLYQGKVQDLVIDRQVAGEGKDSHQKHSTVVGV 184

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           +++D ++++ S VV+TTGTFL   IHIG   IPAGR+G+  S  L  +  +  F  GRLK
Sbjct: 185 ILEDGTLLKASKVVITTGTFLSAEIHIGAKSIPAGRIGEGASYGLSKTLDEAGFKLGRLK 244

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMEN 256
           TGTPARLDG+TI ++  EKQ+ D    P SFM + +  + Q+ C  T T  E H  +  N
Sbjct: 245 TGTPARLDGRTINFESLEKQYGDTPPNPMSFMNEDVAIKDQVLCYGTHTTPEVHEYLRSN 304

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +  +      IK  GPRYCPSIE KI+RF +++ H+I+LEPEGL++ VVYPNGIS ++PE
Sbjct: 305 LHQAPHIRETIK--GPRYCPSIEAKIIRFADKSSHRIWLEPEGLDSHVVYPNGISNSMPE 362

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
            +Q +F+R IPGLE+V I++P Y +EYDYI+P+ L  +LE K + GL+LAGQINGTTGYE
Sbjct: 363 NVQLKFMRMIPGLEQVEILQPAYGVEYDYIDPRSLAKSLEAKPVKGLYLAGQINGTTGYE 422

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EA AQG+ AGIN+         +   R+D+Y+GV+IDDL +KGV EPYRMFTSR+E+RIS
Sbjct: 423 EACAQGIFAGINAGLAHQGKPPLEILRSDAYLGVLIDDLITKGVEEPYRMFTSRSEFRIS 482

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE---YNFLRSLLKSLVLTSKNLS-STS 492
           +R DNAD RLTP+G   G + +    R+A YI +   Y+ + + L +  L++K  + S  
Sbjct: 483 VRADNADFRLTPLGHAAGVVSD---NRYASYINQKALYSEIVTKLLNFELSAKRWNGSLG 539

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSLVIERLQIESSYAAYTGR 548
           +      K R+A+E L +    +  L    P    D  +    V+ ++ +E  YA +  +
Sbjct: 540 VPVADGAKNRSAWEMLRFNGIDLNTLGDKFPELGIDPSQIPKHVLLKIDVEGKYAPFIKK 599

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q    K  + +E  L+P +FDYS LP+LS+E K  L++++P  + QA +I+G+TPA+L  
Sbjct: 600 QNQFIKAFQADEGMLLPPNFDYSILPSLSSECKTILNLVQPSTIGQARRIQGITPASLFE 659

Query: 609 L--LIYIKKNTV 618
           L  L+  K+N +
Sbjct: 660 LYKLVRFKQNDL 671


>gi|78780152|ref|YP_398264.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9312]
 gi|123553639|sp|Q317W7|MNMG_PROM9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78713651|gb|ABB50828.1| glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9312]
          Length = 662

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/639 (44%), Positives = 387/639 (60%), Gaps = 27/639 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D++VIGGGHAGCEAA  +AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIVVIGGGHAGCEAAITSAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----- 117
           DAL G++G++AD   IQ R+LN  KGPAV   R Q D+  Y   M   + + +NL     
Sbjct: 68  DALGGIIGKLADKTAIQKRILNASKGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 118 -----DVIQGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                D+ + E  G N++K +   I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLNSKKIVKKRIKGVRTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTKNLHEIGIKTERLKTGTPARVDKRSIIFDELDAQPSTAADKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            +   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PNIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK N+ D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNEKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E   KR+  Y 
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDE---KRWWAYQ 484

Query: 469 QEYNFLR--------SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
           ++ N L         + LK+    SKN+   + S K  G T T  E L  P+F   +L  
Sbjct: 485 EKMNLLEEEKLRLNNTRLKNTDEISKNIELDTGS-KIKGST-TLKELLKRPNFHYSDLIK 542

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                +   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E 
Sbjct: 543 YNLTEKNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEA 602

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +E L+ +KP N   ASKI G++ A L  LL+++K   +K
Sbjct: 603 RENLNKIKPKNFGDASKIPGVSKADLTALLVWLKIREIK 641


>gi|228478104|ref|ZP_04062715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus salivarius SK126]
 gi|228250284|gb|EEK09537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus salivarius SK126]
          Length = 633

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/623 (43%), Positives = 383/623 (61%), Gaps = 12/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 6   DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 66  DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQS 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +L
Sbjct: 126 MVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++      + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C
Sbjct: 186 ADNLRDLGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG 
Sbjct: 246 WLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK I
Sbjct: 306 ETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-----FLR 475
           LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       +
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLSK 485

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVI 533
             LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + +I
Sbjct: 486 EKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAKII 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKN 616
           QAS+I G+ PA +++L++Y++ N
Sbjct: 603 QASRISGVNPADISILMVYLEGN 625


>gi|322374003|ref|ZP_08048537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C150]
 gi|321276969|gb|EFX54040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C150]
          Length = 633

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/620 (43%), Positives = 382/620 (61%), Gaps = 12/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREIDAL
Sbjct: 9   YDIIVIGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q  + 
Sbjct: 69  GGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQSMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +L ++
Sbjct: 129 DILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI C +T
Sbjct: 189 LKKLGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG  T+
Sbjct: 249 YTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEGRETE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLEK  ++R GYAIEYD + P +L  TLETK ISGL
Sbjct: 309 EVYVQGLSTSLPEDVQKELLHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG LEP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-----FLRSLL 478
           YR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       +  L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFEIKKNQFDSELTRLSKEKL 488

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVIERL 536
           K +  T++ +   ++ FK      TA EF+  P  D++    F + P +    + +IE L
Sbjct: 489 KPVKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPASEDLDAKIIELL 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QAS
Sbjct: 546 ETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+ PA +++L++Y++ N
Sbjct: 606 RISGVNPADISILMVYLEGN 625


>gi|295090267|emb|CBK76374.1| glucose-inhibited division protein A [Clostridium cf.
           saccharolyticum K10]
 gi|295115465|emb|CBL36312.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SM4/1]
          Length = 641

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/622 (43%), Positives = 381/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+ V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEETYDIAVVGAGHAGCEAALAAARLGMETVVFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD+E+Y   M+R + + E+L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKEMYTREMRRVLENTEHLTIKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E+  ++ I     ++  C  VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVTEILAEEGRVTGIRTLSGAVYHCRAVVLATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKALGIEMYRFKTGTPARVDRRSIDFSKMEEQFGDDRVVPFSFTTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNERTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQTAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLRATLEFKA 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQGKEGIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I + R +R  +  Q+   +R  ++
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSGIGHEIGLIDDERYERVLRKEQQ---IREEVE 480

Query: 480 SLVLTSKNLS-STSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L  T    +       K  G T      T  E +  P+ S + +  I P        V 
Sbjct: 481 RLNRTPVGATHEVQECLKSYGSTELKTGSTLAELVRRPELSYEAVKEIDPKRPVLDWDVA 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ+ +  + K  E R + + FDYS++ +L  E  +KL++ KP N+ 
Sbjct: 541 EQVNINIKYEGYIKRQLQQVAQFKKMESRKLDESFDYSTVKSLRKEAVQKLNLYKPRNIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+++++
Sbjct: 601 QASRISGVSPADISVLLVHLEQ 622


>gi|148261392|ref|YP_001235519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidiphilium cryptum JF-5]
 gi|205831483|sp|A5G168|MNMG_ACICJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146403073|gb|ABQ31600.1| glucose inhibited division protein A [Acidiphilium cryptum JF-5]
          Length = 576

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/453 (57%), Positives = 327/453 (72%), Gaps = 1/453 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA++GA TAL+TH+   IG MSCNPAIGG+GKGHLVREIDAL
Sbjct: 8   FDVVVIGGGHAGTEAAAAAARMGARTALLTHRRDRIGEMSCNPAIGGIGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MGR ADAA I F++LN  KGPAV GPR QADR LYR A+Q  + +Q+ L +++GE A
Sbjct: 68  DGVMGRAADAACIHFKMLNRSKGPAVWGPRAQADRGLYRAAVQALLAAQDGLTILEGEAA 127

Query: 126 GFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               T    +++++      I C   VLTTGTFLRGV+H G+     GR+GD+ SN+L  
Sbjct: 128 DLELTADGALAAVITGAGGRIACRAAVLTTGTFLRGVLHFGERTEEGGRVGDAASNALSA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLD ++I W+   +   +    PFS +T +I N QI C I+ 
Sbjct: 188 RLRGLGLALGRLKTGTPARLDRRSIDWEALPEDRGEAEPAPFSLLTGRIANPQISCRISE 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+Y G I   GPRYCPSIEDK+VRF ER  HQ+FLEPEGL  + 
Sbjct: 248 TTPETHAIINANLHRSAVYGGRIDGAGPRYCPSIEDKVVRFAERPRHQVFLEPEGLEDET 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q  FIRT+PGL +  ++RPGYA+EYDY++P+EL   L  KK+ GLF
Sbjct: 308 VYPNGISTSLPEEVQEAFIRTMPGLSRAVLLRPGYAVEYDYVDPRELTHALALKKVPGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+A  +     +   R + YIGV++DDL ++GV EPY
Sbjct: 368 LAGQINGTTGYEEAGAQGLLAGVNAALVAAGRSMVTVRRHEGYIGVLVDDLVTRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
           RMFTSRAE+R+SLR DNAD RLTP G+  GC+G
Sbjct: 428 RMFTSRAEHRLSLRADNADLRLTPRGLDWGCVG 460



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E +    ++  LIP DFD+S +  LS E++ +L  ++P  L  A ++EGM
Sbjct: 497 YEGYLTRQESEIRARAKDDAVLIPPDFDFSVVGGLSAEIRARLERVRPETLGVAGRLEGM 556

Query: 602 TP 603
           TP
Sbjct: 557 TP 558


>gi|254457357|ref|ZP_05070785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
 gi|207086149|gb|EDZ63433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
          Length = 631

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/631 (42%), Positives = 387/631 (61%), Gaps = 24/631 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVI+IGGGHAG EAA  +A++G  T +I+     +G+ SCNPAIGGL KGHLVRE+DA
Sbjct: 6   NYDVIIIGGGHAGVEAALASARMGNKTLMISMLAENVGATSCNPAIGGLAKGHLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D AGIQFR+LN  KGPAVRG R Q D + YR+  +  +L+  NL + Q  V
Sbjct: 66  LGGEMGLITDEAGIQFRILNQTKGPAVRGSRAQIDMDKYRIIARNVVLNTPNLHLAQETV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +     +  +   V++T+GTFL G+IH+G+++   GR G+  S  L +
Sbjct: 126 ESLIIEDSTVKGVKTDLLNEYKAKKVIVTSGTFLNGIIHVGEVQKKGGRYGEERSEGLSD 185

Query: 185 SFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQI 238
           S +K D   +  RLKTGT AR+D  TI +   E+Q  DE   PFSF TD+     + +Q+
Sbjct: 186 S-LKNDCGLNLSRLKTGTCARIDSSTIDFSVMEEQGGDELPSPFSFRTDREEFRASKKQL 244

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I  TN  TH II  N   + +++G I    PRYCPSIEDK+ +F +++ H +F+EP+
Sbjct: 245 PCFIAYTNELTHEIISSNFYRAPLFTGQIAGKSPRYCPSIEDKVSKFADKDRHHLFIEPQ 304

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            ++    Y NG+ST+LP E+Q   I+++ GLE   I+R GYAIEYD+++P+EL  +LETK
Sbjct: 305 TMDNTECYINGLSTSLPPEVQRDMIKSVKGLENAKIVRYGYAIEYDFVDPRELKHSLETK 364

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GL+LAGQINGTTGYEEAAAQGL+AGIN++    + + +   R ++YIGV+IDDL +K
Sbjct: 365 KILGLYLAGQINGTTGYEEAAAQGLMAGINASLSLQEKEPLVLRRDEAYIGVLIDDLVTK 424

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC----------IGERRQKRFAKYI 468
           G  EPYRMFTSRAEYR+ LR ++AD RL+  G +LG           I +++ K  A  +
Sbjct: 425 GTNEPYRMFTSRAEYRLLLREESADTRLSRYGHELGLLSDEMYEKVQIKDKQIKDGALLL 484

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
           +E  F  +  K  +   +++    I         TA + ++   F +  +  I P+  K+
Sbjct: 485 EETKFTPN--KEFIAFLESMGEVPIK-----DISTAQQLVARKSFDVHKMIKIVPELDKY 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              + E + +E  YA Y  +Q  E + +K   K  IP+ FD+  +  LS E+ EKL +  
Sbjct: 538 DDYIKEEILVEGKYARYIDKQSEEIQRMKKYLKIAIPEGFDFKGVSGLSKEIVEKLEMFN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P  L  A +I G+TPAA+ +L IYI+  + K
Sbjct: 598 PPTLQSAMQISGITPAAIEILHIYIRMASKK 628


>gi|312864127|ref|ZP_07724362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus vestibularis F0396]
 gi|311100359|gb|EFQ58567.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus vestibularis F0396]
          Length = 633

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/624 (43%), Positives = 386/624 (61%), Gaps = 14/624 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VREI
Sbjct: 6   DENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q 
Sbjct: 66  DALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQS 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +L
Sbjct: 126 MVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIE 239
            ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++   D + + QI 
Sbjct: 186 ADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLLD-QIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-----FL 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLV 532
           +  LK +  T++ +   ++ FK      TA EF+  P  D++    F + P A    + V
Sbjct: 485 KEKLKPIKETNEKIQ--ALGFKPLTDAMTAKEFMRRPEIDYATATQF-VGPAAEDLDAKV 541

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  +
Sbjct: 542 IELLETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETI 601

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
            QAS+I G+ PA +++L++Y++ N
Sbjct: 602 GQASRISGVNPADISILMVYLEGN 625


>gi|291548775|emb|CBL25037.1| glucose-inhibited division protein A [Ruminococcus torques L2-14]
          Length = 630

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/613 (44%), Positives = 378/613 (61%), Gaps = 5/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 15  YDVVVVGAGHAGCEAALATARLGFKTVIFTVSVDSIALMPCNPNIGGSSKGHLVRELDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +QENLD+ Q EV 
Sbjct: 75  GGEMGKVIDQTFIQSKMLNSSKGPAVHSLRAQADKANYSKTMRQVLQNQENLDIRQMEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +     ++ RC  VVL TGT+L+     G++    G  G   +N L +S
Sbjct: 135 EILAEDGKITGVQTYSGAIYRCKAVVLCTGTYLKARCIYGEISTHTGPNGLQSANYLTDS 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                    R KTGTPAR+D  TI + K ++Q  DER++PFSF TD   +   Q  C +T
Sbjct: 195 LKALGIKMYRFKTGTPARIDKNTIDFSKMQEQKGDERVVPFSFTTDPESVQIDQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL T+
Sbjct: 255 YTNETTHEIIRGNLDRSPLYSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEPEGLETN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE K+I GL
Sbjct: 315 EMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEFKEIEGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAA+QGL+AGIN+ARK    + I   R+  YIGV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAASQGLIAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-QKRFAKYIQEYNFLRSLLKSLV 482
           YRM TSRAEYR+ LR DNAD RLT IG ++G I E R QK   K       +  +  + V
Sbjct: 435 YRMMTSRAEYRLLLRQDNADMRLTKIGYEVGLIDEERYQKLLKKEEMIEKEIERVEHTNV 494

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            T++ + +   S++    T   T  E +  P+ S + +  I     +    V E++ I  
Sbjct: 495 GTTEAVQALLESYESTPLTSGTTLAELIRRPELSYEKIAPIDKHREELPYDVKEQVDINI 554

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQM + ++ K  E + IP++ +Y  + +L  E K+KL+ ++P ++ QAS+I G
Sbjct: 555 KYDGYIKRQMRQVEQFKKLENKRIPENINYDEIQSLRLEAKQKLNQIRPSSIGQASRISG 614

Query: 601 MTPAALNLLLIYI 613
           ++PA +++LL+Y+
Sbjct: 615 VSPADVSVLLVYL 627


>gi|15225046|ref|NP_178974.1| glucose-inhibited division family A protein [Arabidopsis thaliana]
 gi|4733959|gb|AAD28643.1| similar to glucose inhibited division protein A from prokaryotes
           [Arabidopsis thaliana]
 gi|330251139|gb|AEC06233.1| glucose-inhibited division family A protein [Arabidopsis thaliana]
          Length = 723

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/625 (42%), Positives = 386/625 (61%), Gaps = 6/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A+LGAST L+T     I    CNPA+GG  K  LV E+DA
Sbjct: 72  TYDVIVVGAGHAGCEAALASARLGASTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 131

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G+VAD   +Q R+LNV +GPAVR  R Q D+  Y   M++ + S ENL + +  V
Sbjct: 132 LGGDIGKVADRCYLQKRILNVSRGPAVRSLRAQTDKREYATEMKKIVDSTENLCIREAMV 191

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +           +V+LTTGTF+ G I +GK  +PAGR G+S S  L 
Sbjct: 192 TDIIVGKNDNVEGVATFFGMNFYAPSVILTTGTFMSGKIWVGKKSMPAGRAGESASQGLT 251

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  K  F+T RLKTGTPAR+D +TI +   E Q  DE +  FSF  D  I   Q+ C +
Sbjct: 252 ENLQKLGFETDRLKTGTPARVDRRTIDFSNLEAQHGDEEVSWFSFDPDFHIEREQMCCYL 311

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG + 
Sbjct: 312 TRTTKITHQLIRDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGRDV 371

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLE  +++RP YA+EYDY+   +   +L TKKI G
Sbjct: 372 PEIYVQGFSTGLPENLQLPLLRSLPGLENCSMLRPAYAVEYDYLPAHQCSRSLMTKKIEG 431

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAAAQG+++GIN+AR ++    +   R  SYIG +IDDL +K + E
Sbjct: 432 LFFSGQINGTTGYEEAAAQGIISGINAARHADGKKHVVLERESSYIGTLIDDLVTKDLRE 491

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLL 478
           PYRM TSR+E+R+ LR DNAD+RLTP+G +LG I +RR    Q++ A+  +E   L+++ 
Sbjct: 492 PYRMLTSRSEHRLLLRFDNADSRLTPLGRELGLIDDRRWKLYQEKQARISEEKKRLKTVK 551

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            S+ +       +S+S +   ++ T    L  P    + L          S +  + ++I
Sbjct: 552 ISVAVGDLAAEVSSVSSQPVKESATLESLLKKPHIHYKLLEKHGFGNETLSRMEKDCVEI 611

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  + +++  ++ R +P D DY S+  LS+E +EKLS ++P  + QAS++
Sbjct: 612 DIKYEGFIVRQQNQLQQMVHQQHRRLPDDLDYYSMTTLSHEGREKLSKVRPETIGQASRV 671

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G++PA +  LLI ++ N  +  ++
Sbjct: 672 GGVSPADITALLITLESNRRRTQDV 696


>gi|332673056|gb|AEE69873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 83]
          Length = 621

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTTPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARNSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK+F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKNFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|157164575|ref|YP_001466158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter concisus 13826]
 gi|205831538|sp|A7ZBK0|MNMG_CAMC1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|112800397|gb|EAT97741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter concisus 13826]
          Length = 620

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/630 (44%), Positives = 378/630 (60%), Gaps = 39/630 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y++IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 3   YEIIVVGGGHAGIEASLAAARMGKQTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q    
Sbjct: 63  GGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIAT 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +E   I+ +    N+      V++TTGTFL G+IH+G  K+ AGR+G+  +  L +S
Sbjct: 123 EILSENGEITGVKTHLNNTYNAKKVIITTGTFLNGLIHVGFNKLEAGRVGELSAKDLSSS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   + GRLKTGT  R+D KTI ++  EKQ  D + + FSF T   +  Q+ C I  T
Sbjct: 183 LRELGLNLGRLKTGTCPRIDAKTINFEILEKQDGDAKPVAFSFRTKNFSPTQLPCYIAYT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L     
Sbjct: 243 NETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTLEATEY 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I+R GYAIEYDY+ P +L  +LETKK+ GL+L
Sbjct: 303 YINGFSTSLPYEVQVQMLRSVKGFENAKIVRHGYAIEYDYVEPTQLKHSLETKKVKGLYL 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AGIN+A   +  + +   R ++YIGV+IDDL +KG  EPYR
Sbjct: 363 AGQINGTTGYEEAGAQGLMAGINAALSLDNKEPLILRRDEAYIGVLIDDLVTKGTKEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE----------RRQKRFAKYIQEYNFLR 475
           MFTSRAEYR+ LR +NA  RL   G +LG + +          R  K   +++ E     
Sbjct: 423 MFTSRAEYRLLLREENAILRLGGYGHELGLLDDETFNEIENIRRNLKEGLEFLNETQITP 482

Query: 476 S-----LLKSL--VLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
           S     LL SL     S+N+S   I    SF  +   +    F++  D S+  + + C  
Sbjct: 483 SKANLELLASLDEEPISQNVSLQKIVARKSFTAEKLRKLDERFVNLDDASMDQILTEC-- 540

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                            Y  Y   Q  + +++K      IP++FD+ S+  LSNE+ EKL
Sbjct: 541 ----------------KYQHYISEQKNQIEKMKDMMDVKIPENFDFRSISGLSNEVVEKL 584

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
               P  L  AS+I G+TPAA+++L IYIK
Sbjct: 585 EKFAPPTLFAASEISGITPAAIDILHIYIK 614


>gi|296329306|ref|ZP_06871807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153662|gb|EFG94479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 633

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/630 (43%), Positives = 381/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKIIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K      R KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D ++ 
Sbjct: 182 EELPLSLEKIGLKLERFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKKKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ S +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRRENPIKDGS--TLLELLRRPEVSFEDIKYISEEIRGID 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|242005272|ref|XP_002423494.1| glucose inhibited division protein A, putative [Pediculus humanus
           corporis]
 gi|212506598|gb|EEB10756.1| glucose inhibited division protein A, putative [Pediculus humanus
           corporis]
          Length = 644

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/636 (44%), Positives = 396/636 (62%), Gaps = 24/636 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
             ++ YDVIV+GGGHAG EA   A+++G ++ LITHK  +IG MSCNP+ GG+GKGHL++
Sbjct: 16  FFSKKYDVIVVGGGHAGVEACCAASRMGVNSLLITHKKESIGEMSCNPSFGGIGKGHLMK 75

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDV 119
           E+DALDG+  R+ D  G+ ++VLN  KGPAV GPR Q DR+LY+  +Q E+ ++  NLDV
Sbjct: 76  EVDALDGVCARICDLTGVHYKVLNKSKGPAVWGPRAQIDRKLYKKEIQNEVFNKTSNLDV 135

Query: 120 IQGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +   V     + E N    +V +    I   TV+LTTGTFL   I+IG    PAGRMGD 
Sbjct: 136 MFTSVDDLLIDKESNSCLGVVTKLGDKILSKTVILTTGTFLNAQINIGLEVKPAGRMGDE 195

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           P+  L  +  +  F  GRLKTGTP RL  +TI +    +Q  D    PFSF+  K+  R 
Sbjct: 196 PAIPLAKTLERLKFSLGRLKTGTPPRLRKETIDFSVCIRQEPDNPSQPFSFLNKKVWIRP 255

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             QI C +T TN +  +II +N+  +     +I   GPRYCPSIE K +RF  R  HQI+
Sbjct: 256 ENQIPCFLTHTNEKIGKIIADNMHLNRHVREEIN--GPRYCPSIESKYLRFN-RAQHQIW 312

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL++DV+YP G+S  LPE++Q + +  +PGLEK  I++PGY +EYDY++P+EL P+
Sbjct: 313 LEPEGLDSDVIYPGGLSCTLPEDLQQKIVNELPGLEKAVIVQPGYGVEYDYVDPRELNPS 372

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET K+  LF AGQINGTTGYEEAAAQG++AGIN+A K         +R++ YIGV+IDD
Sbjct: 373 LETIKVPNLFFAGQINGTTGYEEAAAQGVIAGINAAAKCQGKPEFIVNRSEGYIGVLIDD 432

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT+ G  EPYRMFTSRAE+R+ LRPDNAD RLT  G  +GC+    + R+   +   N L
Sbjct: 433 LTTLGTNEPYRMFTSRAEFRLYLRPDNADLRLTKKGYDIGCVS---KDRYELTLSVENIL 489

Query: 475 RSLLKSLVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYP----DFSIQNLFSICPDARKF 528
              +K L    K++ S    +   +   T        +P    + +   L S+   A K 
Sbjct: 490 NETIKKLKSDFKSVYSWCDILKMNKSKNTEKVSAMQMFPSVRFNANFDELRSLSETAFKH 549

Query: 529 ---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY--SSLPALSNELKEK 583
               +++  R+ +E+ Y +   ++++E +E++ +E   IP   DY   SL  +S E + K
Sbjct: 550 LPEDNILCHRILVEAIYESALEQELLEIEEVRKQESLKIPNSIDYFKESL-NMSLEERSK 608

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           LS+ KP  +  AS+I G+TPA++  LL Y++KN ++
Sbjct: 609 LSLAKPQTIAAASRIPGVTPASIIYLLKYVQKNALQ 644


>gi|167751435|ref|ZP_02423562.1| hypothetical protein EUBSIR_02431 [Eubacterium siraeum DSM 15702]
 gi|167655681|gb|EDR99810.1| hypothetical protein EUBSIR_02431 [Eubacterium siraeum DSM 15702]
          Length = 625

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/614 (44%), Positives = 379/614 (61%), Gaps = 9/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  L  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQLTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIQGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYIPDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LLKSL 481
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF   ++  N L +    + K+ 
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRF---LERKNILDNETSRIKKAT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   + L+    S      T+     E L  P    ++L     +A +    +I++L+I 
Sbjct: 484 IYPCEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLAQFDDNAPELEHDIIDKLEIN 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I 
Sbjct: 544 IKYEGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKYRPLNIGQAGRIS 603

Query: 600 GMTPAALNLLLIYI 613
           G+ PA +++LLI++
Sbjct: 604 GVNPADVSVLLIWL 617


>gi|317472411|ref|ZP_07931736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900131|gb|EFV22120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerostipes sp. 3_2_56FAA]
          Length = 627

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/616 (43%), Positives = 381/616 (61%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA  +A+LG  T   T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 8   YDIVVVGAGHAGCEAALASARLGFKTICFTVSMDSIALMPCNPNIGGSSKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ ++LN  KGPAV   R QAD+++Y +AM + + + +NL V QGEV 
Sbjct: 68  GGEMGVNIDKTYIQSKMLNRSKGPAVHSLRAQADKKMYSMAMTQTMGNTKNLTVRQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T+   ++ +     ++     V+LTTGT+L+     G +    G  G   +N L  S
Sbjct: 128 QILTQNGKVTGVKTYSGAVYHAKAVILTTGTYLKARCIYGDVSNETGPNGLQAANYLTQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                 +  R KTGTPAR+D  +I ++K E+QF D++++PFSF    + I   QI C +T
Sbjct: 188 LKDLGIEMRRFKTGTPARIDKNSIDFNKMEEQFGDDKIVPFSFTNTREDIQRDQISCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG  T+
Sbjct: 248 YTNEETHEIIRENIGRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEGEYTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++ GLE V IIR  YAIEYD IN  +L P+LE +KI GL
Sbjct: 308 EMYVGGMSSSLPEDVQYAMYRSVTGLENVKIIRNAYAIEYDCINATQLKPSLEFRKIGGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R+ +YIGV+IDDL +K   EP
Sbjct: 368 FSAGQFNGSSGYEEAAAQGLIAGINAARMIQGKESLVLDRSQAYIGVLIDDLVTKETSEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLK 479
           YRM TSRAEYR+ LR DNAD RL+ IG ++G I E R +      A+  +E N L  +  
Sbjct: 428 YRMMTSRAEYRLLLRQDNADLRLSKIGYEMGLISEERYQNLLEKEARIEKEINRLSRVNV 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 ++L S   S +    + T  E +  P+ +   L  I PD  ++   V E++ I 
Sbjct: 488 GASGKVQDLLSKCQSTELKS-SATMAELIRRPELTYDMLSPIDPDRPEYPEDVREQVNIN 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + K+ K  EK+ IP+   Y  +  L  E  +KLS ++P ++ QAS+I 
Sbjct: 547 IKYEGYIKRQLSQVKQFKRLEKKKIPEGIKYEDIGNLRIEAIQKLSKIRPASIGQASRIS 606

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 607 GVSPADISVLLIYLEQ 622


>gi|170756087|ref|YP_001783277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B1 str. Okra]
 gi|205831524|sp|B1IHR8|MNMG_CLOBK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169121299|gb|ACA45135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B1 str. Okra]
          Length = 625

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/619 (43%), Positives = 390/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T T
Sbjct: 188 LLNLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERL 536
           K       L   S   K   K  + YE +  P+    + F + P   K  SL     E +
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|153811976|ref|ZP_01964644.1| hypothetical protein RUMOBE_02369 [Ruminococcus obeum ATCC 29174]
 gi|149831875|gb|EDM86961.1| hypothetical protein RUMOBE_02369 [Ruminococcus obeum ATCC 29174]
          Length = 631

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 385/623 (61%), Gaps = 13/623 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++ D++V+G GHAGCEA+   A+LG  T + T    +I  M CNP +GG  KGHLV+E
Sbjct: 6   LEKTCDIVVVGAGHAGCEASLACARLGLDTVMFTVSVDSIALMPCNPNVGGSSKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +QENL + Q
Sbjct: 66  LDALGGEMGKNIDKTFIQSKMLNSSKGPAVHSLRAQADKQAYSTEMRKTLENQENLTIKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E+  I+ + +   ++  C  VVL TGT+L+     G +    G  G   +N 
Sbjct: 126 GEVTKLLVEEGKITGVQLYSGAVYHCQAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANY 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S  +   +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +  +Q  
Sbjct: 186 LTDSLKELGIEMFRFKTGTPARIAGNTINYSKMEEQFGDERVVPFSFSTDPESVQIQQKS 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG
Sbjct: 246 CWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKKRHQVFIEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q +   ++PGLE   I++  YAIEYD INP++L+PTLE KK
Sbjct: 306 LYTNEMYIGGMSSSLPEDVQDEMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKK 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K 
Sbjct: 366 IKGLFSGGQFNGSSGYEEAAAQGLIAGINAAMEVKGREQLVLDRSEAYIGVLIDDLVTKE 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE-------RRQKRFAKYIQEYN 472
             EPYRM TSRAEYR+ LR DNAD RL   G ++G I E       R+++   K I+   
Sbjct: 426 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYQVGLIDEETYQAVLRKEEAIQKEIERTE 485

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              + +       K L     +  + G   T  E +  P+ + ++L  I  +  +    V
Sbjct: 486 --HATIGGTPEVQKLLEEKGSTLLKSGT--TIAELIRRPELNYEDLAPIDKERPELPWDV 541

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            ++++I   Y  Y  RQ+ + ++ K  E + IP+D DY  + +L  E ++KL   +P ++
Sbjct: 542 KQQVEINLKYEGYIKRQLKQVEQFKKLEAKKIPEDLDYEKVGSLRIEARQKLEEYRPISI 601

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++LL+Y+++
Sbjct: 602 GQASRISGVSPADISVLLVYLEQ 624


>gi|299820855|ref|ZP_07052744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria grayi DSM 20601]
 gi|299817876|gb|EFI85111.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria grayi DSM 20601]
          Length = 641

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/619 (43%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  NYDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 79  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +     TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 139 EELIIEDGRCVGVITNSGAKYHAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   +I + KTE+Q  DE+   FS+ T  +   Q+ C +T 
Sbjct: 199 HLEELGFELRRFKTGTPPRVKSSSIDYTKTEEQPGDEQPQAFSYETVDMLVDQLPCWLTY 258

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 259 TNEQTHEIINANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGRNTEE 318

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD + P +L+PTLETKK+  L+
Sbjct: 319 VYVQGLSTSLPEDVQREMLQTIPGLENVEMMRVGYAIEYDAVMPDQLWPTLETKKVENLY 378

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK+   + +   R ++YIGV+IDDL +KG  EPY
Sbjct: 379 TAGQINGTSGYEEAAGQGLMAGINAARKAMDKEPVILGRNEAYIGVLIDDLVTKGTEEPY 438

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL-LK 479
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R   F    A    E   L+ + +K
Sbjct: 439 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYAAFKEKQALIADEITRLKKVRIK 498

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L+    +  +DG    A +FL  P+ +   +  I P     S  + E+++I+
Sbjct: 499 PTKEVQILLTEMGANELKDGV--LAADFLRRPEITYPIIEQIVPRETSLSDEIKEQVEIQ 556

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +  ++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 557 IKYEGYIEKASAQVDKMKRMEDKKIPENIDYDAIGGLATEALEKLKKIEPLSIAQASRIS 616

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 617 GVNPADISILLVYIEQGKI 635


>gi|87126017|gb|ABD20531.1| glucose-inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87204224|gb|ABD32034.1| glucose inhibited division protein A, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 594

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/592 (45%), Positives = 376/592 (63%), Gaps = 7/592 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEF 507
           LG I E R  RF +  Q+ +     L  + +  K    T    +Q G +R      A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRI--KPNEHTQAIIEQHGGSRLKDGILAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  +  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILELLEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQ 590


>gi|320040702|gb|EFW22635.1| mitochondrial translation optimization protein [Coccidioides
           posadasii str. Silveira]
          Length = 694

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/635 (44%), Positives = 387/635 (60%), Gaps = 27/635 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTEKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     +  + S          + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLGSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQVTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY---------PDFSIQNLFS 520
           +   L++LL++    S   S        D   R+A+E L           P  +  +  S
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P +  F + +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E 
Sbjct: 573 YTPGS--FDAKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEE 630

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  L  ++P ++  A +IEG+TP     LL++++K
Sbjct: 631 RHALERVRPESVGMARRIEGVTPTGALRLLMHMRK 665


>gi|210614311|ref|ZP_03290159.1| hypothetical protein CLONEX_02373 [Clostridium nexile DSM 1787]
 gi|210150727|gb|EEA81736.1| hypothetical protein CLONEX_02373 [Clostridium nexile DSM 1787]
          Length = 648

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/637 (42%), Positives = 380/637 (59%), Gaps = 39/637 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 15  YDVVVVGAGHAGCEAALACARLGIKTIIFTVSVDSIALMPCNPNIGGSSKGHLVKEVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL++ Q EV 
Sbjct: 75  GGEMGKVIDQTFIQSKMLNKSKGPAVHSLRAQADKANYSKTMRMVLENQENLEIKQAEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I  +     ++ +C  V+L TGT+L+     G++    G  G   +  L +S
Sbjct: 135 DILAKDGKIEGVQTYSGAVYKCKAVILCTGTYLKARCIYGEISQETGPNGLQAATYLTDS 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K   +  R KTGTPAR+D  +I + K E+QF DER++PFSF T  + +   Q  C +T
Sbjct: 195 LKKLGIEMYRFKTGTPARIDKNSIDFSKMEEQFGDERVVPFSFTTNPEDVQIEQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL+T+
Sbjct: 255 YTNEKTHEIIRANLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNKHQVFIEPEGLDTN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L+PTLE K + GL
Sbjct: 315 EMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLYPTLEFKNVGGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +  GQ NG++GYEEAAAQGLVAGIN+A K    + I   R+ +YIGV+IDDL +K   EP
Sbjct: 375 YSGGQFNGSSGYEEAAAQGLVAGINAALKILGREQIVLDRSQAYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG ++G I + R          Y +L    + +V 
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTKIGHEIGLISDER----------YEYLLEKERIIVS 484

Query: 484 TSKNLSSTSISFKQD--------GKT-----RTAYEFLSYPDFSIQ---------NLFSI 521
             + L  T+I   Q+        G T      T  E +  P+ S +         N+   
Sbjct: 485 EVERLEHTNIGAAQEVQDLLVKYGSTPLNSGTTLAELIRRPELSYEVLEPIDKRRNIVQK 544

Query: 522 CPD-----ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
           C +       K    V+E++ I   Y  Y  RQ  + ++ K  EK+ IP+D DY  + +L
Sbjct: 545 CAEKYPENVDKLCQEVVEQVNINIKYDGYIKRQQKQVEQFKKLEKKRIPEDIDYDVIKSL 604

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
             E  +KL   +P ++ QAS+I G++PA +++LL+Y+
Sbjct: 605 RIEAVQKLKQYRPLSIGQASRISGVSPADISVLLVYL 641


>gi|288906421|ref|YP_003431643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus UCN34]
 gi|288733147|emb|CBI14728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus UCN34]
          Length = 634

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/617 (43%), Positives = 378/617 (61%), Gaps = 8/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRIKVSSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L +L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLSTLK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQ 537
           +      N    ++ FK      TA EF+  P+  + I   F + P   K  S VIE L+
Sbjct: 488 IKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSF-VGPAEEKLDSKVIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++L++Y++
Sbjct: 607 ISGVNPADISILMVYLE 623


>gi|297835986|ref|XP_002885875.1| glucose-inhibited division family A protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331715|gb|EFH62134.1| glucose-inhibited division family A protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 730

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/625 (42%), Positives = 386/625 (61%), Gaps = 6/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A+LGAST L+T     I    CNPA+GG  K  LV E+DA
Sbjct: 79  TYDVIVVGAGHAGCEAALASARLGASTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 138

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G+VAD   +Q R+LNV +GPAVR  R Q D+  Y + M++ + S +NL + +  V
Sbjct: 139 LGGDIGKVADRCYLQKRILNVSRGPAVRSLRAQTDKREYAMEMKKIVDSTQNLCIREAMV 198

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +           +V+LTTGTF+ G I +GK  +PAGR G+S S  L 
Sbjct: 199 TDIIVGKNDNVEGVATFFGMNFYAPSVILTTGTFMSGKIWVGKKSMPAGRAGESASQGLT 258

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  K  F+T RLKTGTPAR+D +TI +   E Q  DE +  FSF  D  I   Q+ C +
Sbjct: 259 ENLQKLGFETDRLKTGTPARVDRRTIDFSNLEAQHGDEEVSWFSFDPDFHIEREQMCCYL 318

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG + 
Sbjct: 319 TRTTKITHQLIRDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGRDV 378

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLE  +++RP YA+EYDY+   +   +L TKKI G
Sbjct: 379 PEIYVQGFSTGLPENLQLPLLRSLPGLENCSMLRPAYAVEYDYLPAHQCSRSLMTKKIEG 438

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAAAQG+++GIN+AR ++    +   R  SYIG +IDDL +K + E
Sbjct: 439 LFFSGQINGTTGYEEAAAQGIISGINAARHADGKKHVVLERESSYIGTLIDDLVTKDLRE 498

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLL 478
           PYRM TSR+E+R+ LR DNAD+RLTP+G +LG I +RR    Q++ A+  +E   L+++ 
Sbjct: 499 PYRMLTSRSEHRLLLRFDNADSRLTPLGRELGLIDDRRWKLYQEKQARISEEKKRLKTVK 558

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            S+ +       +S+S +    + T    L  P    + L          S +  + ++I
Sbjct: 559 ISVAVGDLASEVSSVSSQPVKVSATLESLLKKPHIHYKLLEKHGFGNETLSRMEKDCVEI 618

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  + +++  ++ R +P D DY S+  LS+E +EKLS ++P  + QAS++
Sbjct: 619 DIKYEGFIVRQQNQLQQMAHQQHRRLPDDLDYYSMTTLSHEGREKLSKVRPETIGQASRV 678

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G++PA +  LLI ++ N  +  ++
Sbjct: 679 GGVSPADITALLITLESNRRRTQDV 703


>gi|303322268|ref|XP_003071127.1| glucose-inhibited division protein A containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110826|gb|EER28982.1| glucose-inhibited division protein A containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 694

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/635 (44%), Positives = 386/635 (60%), Gaps = 27/635 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA               K  I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLRSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQVTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY---------PDFSIQNLFS 520
           +   L++LL++    S   S        D   R+A+E L           P  +  +  S
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P +  F + +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E 
Sbjct: 573 YTPGS--FDAKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEE 630

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +  L  ++P ++  A +IEG+TP     LL++++K
Sbjct: 631 RHALERVRPESVGMARRIEGVTPTGALRLLMHMRK 665


>gi|125624808|ref|YP_001033291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345425|sp|O32806|MNMG_LACLM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|124493616|emb|CAL98603.1| glucose inhibited division protein A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071607|gb|ADJ61007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 625

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 381/620 (61%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 6   NYDVIVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + QG V
Sbjct: 66  LGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYAASMKNTVSDQENLTLRQGMV 125

Query: 125 AGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                + EK  +  +     +      V++TTGT LRG I IG+LK  +G      S  L
Sbjct: 126 EELILDDEKQKVIGVRTSTGTQYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     QI C
Sbjct: 186 ADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG 
Sbjct: 246 WLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 306 NTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAKMMRPGYAIEYDVVMPHQLRPTLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKIQGKPEFILKRSEAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS 476
           LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G +     E  Q + A++ +E   L S
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNS 485

Query: 477 -LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIE 534
             LK L  T + L        +D    T  EFL  P+ +   +      A +     VIE
Sbjct: 486 EKLKPLPDTQEKLGKLGFGPIKD--ALTGAEFLKRPEVNYDEVIDFIGQAPEVIDRTVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L Q
Sbjct: 544 LIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|88809508|ref|ZP_01125016.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
 gi|88786727|gb|EAR17886.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
          Length = 659

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/630 (42%), Positives = 377/630 (59%), Gaps = 20/630 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            G   E +                 I+ +     S      VVLT GTFL G I +G   
Sbjct: 130 TGLEIEGDASGGGESWDPSQGPAARITGVRTYFGSTYEAKAVVLTAGTFLGGRIWVGHQS 189

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
           + AGR G+  +  L ++  +  F T RLKTGTPAR+D ++I  D+ ++Q +D     FSF
Sbjct: 190 MAAGRAGEQAAEGLTDALQQLGFHTDRLKTGTPARVDRRSIALDQLDEQPSDAADRFFSF 249

Query: 229 -MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
                ++  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +
Sbjct: 250 DPAAWVSGEQMSCHITRTTAATHQLIKDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFAD 309

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           ++ HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+ 
Sbjct: 310 KDSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLP 369

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
             +LFP+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+      + F R  SY
Sbjct: 370 ATQLFPSLETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQSAVHFPREGSY 429

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F + 
Sbjct: 430 IGTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQMFEQK 489

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPD 524
           +      +  L++  L   +  + ++  +     +   T  + L  P     +L      
Sbjct: 490 LTALESEKQRLETQRLKVSDPVAPAVEAQTGASIKGSITLADLLRRPGMHADDLVHHGLA 549

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                  V E  +I+  Y+ Y  RQ  +  ++K + +R +P   DY+ +  LS E +EKL
Sbjct: 550 DADLPLPVREGAEIDIKYSGYLQRQQQQIDQVKRQSRRKLPASIDYAKISTLSREAREKL 609

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + ++P  L QAS+I G++ A L  LL++++
Sbjct: 610 TAVRPITLGQASQIPGVSQADLTALLMWLE 639


>gi|256846128|ref|ZP_05551586.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
 gi|256719687|gb|EEU33242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
          Length = 633

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/630 (43%), Positives = 381/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVAEEENGKKIIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H+II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHKIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVKNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILVKTNVGPSNPRVNEILLKRGENPIKDGS--TLLELLRRPEVTFEDIKYISEEIKGLD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDYDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|15673829|ref|NP_268004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878503|sp|Q9CEJ4|MNMG_LACLA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12724877|gb|AAK05945.1|AE006414_11 glucose inhibited division protein GidA [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326407338|gb|ADZ64409.1| glucose inhibited division protein A [Lactococcus lactis subsp.
           lactis CV56]
          Length = 625

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 379/620 (61%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 6   NYDVVVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + QG V
Sbjct: 66  LGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYADSMKNTVSDQENLTLRQGMV 125

Query: 125 AGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                + EK  +  I     +      V++TTGT LRG I IG+LK  +G      S  L
Sbjct: 126 EELILDEEKKKVIGIKTSTGTKYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     QI C
Sbjct: 186 ADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDENYLKDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   +H I+  N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG 
Sbjct: 246 WLTYTTENSHTILRGNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 306 NTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAQMMRPGYAIEYDVVMPHQLRPTLETKLV 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKSEFILKRSEAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS 476
           LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G +     E  Q + A++ +E   L S
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDEQWEHYQAKMAQFDREMKRLNS 485

Query: 477 -LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIE 534
             LK L  T + L        +D    T  EFL  P+     +      A  K    VIE
Sbjct: 486 EKLKPLPDTQEKLGKLGFGPIKD--ALTGAEFLKRPEVHYNEVIDFIGQAPEKIDRTVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L Q
Sbjct: 544 LIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|223996205|ref|XP_002287776.1| hypothetical protein THAPSDRAFT_268238 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976892|gb|EED95219.1| hypothetical protein THAPSDRAFT_268238 [Thalassiosira pseudonana
           CCMP1335]
          Length = 769

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 297/667 (44%), Positives = 398/667 (59%), Gaps = 51/667 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++SYDVI++GGGHAG EAA  +A+ GA T L+T   ST+G +SCNP+IGG+GKGHLVREI
Sbjct: 92  SKSYDVIIVGGGHAGTEAATASARTGARTLLLTQNKSTLGELSCNPSIGGIGKGHLVREI 151

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-------- 114
           DAL G+MG VAD +GI FR+LN +KGPAVRGPR Q DR+LY+  MQ  +L+         
Sbjct: 152 DALQGVMGEVADGSGIHFRMLNRRKGPAVRGPRGQMDRDLYKKNMQDLLLNGVELGINGI 211

Query: 115 ENLDVIQGEVAGFN-TEKNIISSIV-MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           ENLDV++         E + I ++  + D   I  +TVVLTTGTFLRGV+ IG  +   G
Sbjct: 212 ENLDVMEASAEDLLLDEGDAIETLAPLADRVEIESTTVVLTTGTFLRGVLMIGHERYSGG 271

Query: 173 R-MGDS-----PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           R + DS     PS  L  +  +F F  GRLKTGTPARLDG+TI WD    Q ++   IPF
Sbjct: 272 RHLRDSEEVEPPSVGLALTLERFGFPLGRLKTGTPARLDGRTIDWDGCNIQPSERPAIPF 331

Query: 227 SFMTDK--------ITNRQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPS 277
           S +            +   I+C  T TN  THR++M+       Y G D K  GPRYCPS
Sbjct: 332 SHIRQSRGEEPPLAASGNLIDCYQTATNEATHRLVMDYAHLLPQYDGMDGKGNGPRYCPS 391

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           I  K+ RF ERN H  FLEPEGLNT +VYPNG+S   PEEIQ Q  R++ GLEKV I+RP
Sbjct: 392 IFKKVERFAERNSHNSFLEPEGLNTHIVYPNGMSGPYPEEIQLQIFRSMKGLEKVEIVRP 451

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GY +EYD++NP  L  TLETK I+GL+LAGQI GTTGYEEA AQG++AG N+ R +    
Sbjct: 452 GYDVEYDFVNPTALTHTLETKSIAGLYLAGQICGTTGYEEAGAQGVIAGANAGRAAGAAY 511

Query: 398 C-------ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
                       R ++YIGV+IDDL +KG LEPYRMFTSRAEYRISLR DNAD RLT  G
Sbjct: 512 RGEKPPLPFVLGRDEAYIGVLIDDLVTKGTLEPYRMFTSRAEYRISLRADNADIRLTRKG 571

Query: 451 MKLGCIG--------ERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-LSSTSISFKQ--DG 499
            + G +         + R+   A  ++     +  +        N L   + + +Q  + 
Sbjct: 572 AEHGLVTDPERLAALDMRENLIADNVERLRNFKLFVTDWANRGGNDLMGGAAATRQGRES 631

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPD--ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
             ++A E L  P  +++++  I  D       S V + ++    Y +Y  RQ  + +  +
Sbjct: 632 HKKSAEEVLGMPHVTLEDVEKIMADYEMNPTPSSVYDTVEASVKYKSYVVRQEKDIESWR 691

Query: 558 FEEKRLIPKD--FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             +   IP +  +++S +P  S E  EKL+  KP    +AS+I G+TP +    L+Y+  
Sbjct: 692 KAQGARIPPNIIYEHSIMPTFSKEEIEKLNRFKPTTFAEASQISGLTPQS----LVYLYH 747

Query: 616 NTVKLNE 622
           + +KLN+
Sbjct: 748 HVMKLNK 754


>gi|326404881|ref|YP_004284963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acidiphilium multivorum AIU301]
 gi|325051743|dbj|BAJ82081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acidiphilium multivorum AIU301]
          Length = 566

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/426 (56%), Positives = 304/426 (71%), Gaps = 1/426 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+   IG MSCNPAIGG+GKGHLVREIDALDG+MGR ADAA I F++LN  KGPAV 
Sbjct: 25  LLTHRRDRIGEMSCNPAIGGIGKGHLVREIDALDGIMGRAADAACIHFKMLNRSKGPAVW 84

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN-TEKNIISSIVMQDNSMIRCSTVV 151
           GPR QADR LYR A+Q  + +Q+ L +++GE A    +    +++++    + I C   V
Sbjct: 85  GPRAQADRGLYRAAVQALLAAQDGLTILEGEAADLELSADGALAAVITGAGARIACRAAV 144

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LTTGTFLRGV+H G+     GR+GD+ SN+L           GRLKTGTPARLD ++I W
Sbjct: 145 LTTGTFLRGVLHFGERTEEGGRVGDAASNALSARLRGLGLALGRLKTGTPARLDRRSIDW 204

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
           +   +   +    PFS +T +I N QI C I+ T  ETH II  N+  SA+Y G I   G
Sbjct: 205 EALPEDRGEAEPAPFSLLTGRIANPQISCRISETTPETHAIINANLHRSAVYGGRIDGAG 264

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRF ER  HQ+FLEPEGL  + VYPNGIST+LPEE+Q  FIRT+PGL +
Sbjct: 265 PRYCPSIEDKVVRFAERPRHQVFLEPEGLEDETVYPNGISTSLPEEVQEAFIRTMPGLSR 324

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             ++RPGYA+EYDY++P+EL   L  KK+ GLFLAGQINGTTGYEEA AQGL+AG+N+A 
Sbjct: 325 AVLLRPGYAVEYDYVDPRELTHALALKKVPGLFLAGQINGTTGYEEAGAQGLLAGVNAAL 384

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +     +   R + YIGV++DDL ++GV EPYRMFTSRAE+R+SLR DNAD RLTP G+
Sbjct: 385 VAAGRSMVTVRRHEGYIGVLVDDLVTRGVSEPYRMFTSRAEHRLSLRADNADLRLTPRGL 444

Query: 452 KLGCIG 457
             GC+G
Sbjct: 445 DWGCVG 450



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E +    ++  LIP DFD+S +  LS E++ +L  ++P  L  A ++EGM
Sbjct: 487 YEGYLTRQESEIRARAKDDAVLIPPDFDFSVVGGLSAEIRARLERVRPETLGVAGRLEGM 546

Query: 602 TP 603
           TP
Sbjct: 547 TP 548


>gi|91070437|gb|ABE11348.1| glucose inhibited division protein A [uncultured Prochlorococcus
           marinus clone HOT0M-10E12]
          Length = 655

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/634 (43%), Positives = 381/634 (60%), Gaps = 17/634 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEKN----IISSIVMQD---------NSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +  K     +IS  + +           S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLISKKIFKKRIKGVRTFFGSYYSAKSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTQNLHEIGIKTERLKTGTPARVDKRSIIFDELDIQPSTAADKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLGECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGINATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLINEKRWSVYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I  +   K +   T  E L  P+F   +L     + 
Sbjct: 488 KLLEEEKFRLNNTRLKNTDEISKKIELETGSKIKGSTTLKELLKRPNFHYSDLIKYNLNE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           R   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 RNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPEEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            +KP N   ASKI G++ A L  LL+++K   +K
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIK 641


>gi|257067215|ref|YP_003153471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus prevotii DSM 20548]
 gi|256799095|gb|ACV29750.1| glucose inhibited division protein A [Anaerococcus prevotii DSM
           20548]
          Length = 628

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 379/618 (61%), Gaps = 12/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+G GHAGCEA   A++LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 9   SYDVVVVGAGHAGCEAGLAASRLGLKTLILTTSMESIADMPCNPNIGGTGKGHIVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G M    D   IQ R+LN  KGPAV   R QAD+ LY   M++ +  ++ +D+ + EV
Sbjct: 69  MGGQMALNIDKTFIQSRMLNTSKGPAVHSLRVQADKRLYHEEMKKTL--EKEVDLFEQEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N E   I S    + ++     +++ TGT+L G I IG  +  +G  G S +  L +
Sbjct: 127 DKINYEDGKIVSCETVEGAIFETKALIIATGTYLNGKILIGDYEKVSGPHGLSAATYLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE-CG 241
           S  +  F   R KTGTPAR+D K++  +KTE Q  D+ +IPFSF+ +    ++R  E C 
Sbjct: 187 SLEELGFKLRRFKTGTPARVDRKSLHLEKTEIQKGDDEVIPFSFLNEGRDFSDRHQENCY 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET +IIM+N+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL 
Sbjct: 247 LTYTRPETKQIIMDNLDRSPIYGGHIKGVGPRYCPSIEDKMVRFPDRDIHQVFIEPEGLT 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ + L+ TLE+K   
Sbjct: 307 TDEMYVQGVSSSLPQEVQFDFYKTIIGLEDVKIMRPAYAIEYDMIDTRNLYRTLESKDYE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K    D     R+D YIGV+IDDL ++G  
Sbjct: 367 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEDPFILDRSDGYIGVLIDDLVTEGTE 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RLT    K+G + E R ++        +     LK++
Sbjct: 427 EPYRMMTSRCEYRLTMRQDNADQRLTERAYKIGLVSEERYQKMVDKRTAIDKEIERLKTV 486

Query: 482 VLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +LT K    T+   K+ G T      + ++ L  P+   + L    P+  K       + 
Sbjct: 487 MLTPK--EETNKKLKELGTTPLNNGMSLHDLLKRPELDYEMLEVFDPERPKLPKFQQIQA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           Q E  Y  Y  +QM +  + K  E + + K+ DY  +P L  E  EKL+ ++P ++ QAS
Sbjct: 545 QTEIKYEGYIKKQMADIDKFKKLEGKKLRKNIDYFKIPGLKKESAEKLNDIQPESIGQAS 604

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++PA +N+LLI +K
Sbjct: 605 RISGVSPADINVLLIRLK 622


>gi|255729512|ref|XP_002549681.1| hypothetical protein CTRG_03978 [Candida tropicalis MYA-3404]
 gi|240132750|gb|EER32307.1| hypothetical protein CTRG_03978 [Candida tropicalis MYA-3404]
          Length = 684

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/651 (42%), Positives = 399/651 (61%), Gaps = 38/651 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIV+GGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  HPVIVVGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V 
Sbjct: 98  DGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVE 157

Query: 126 G------FNTEKN-------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                   N E +       I+  +++ D  +++   VV+TTGTFL G IHIG    P+G
Sbjct: 158 DIIIEPKLNNEGDYAGRTFGIVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+  +  L  +     F  GRLKTGTP RL  KTI +    +Q +D    P S+M DK
Sbjct: 218 RIGEEATFGLSKTLRDAGFRLGRLKTGTPPRLSAKTINFKGLIEQPSDFPPQPMSYMNDK 277

Query: 233 IT--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   ++ ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ 
Sbjct: 278 VALEDQLVKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDF 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+E
Sbjct: 336 HYVWLEPEGLDTDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK + GLFLAGQINGTTGYEEAAAQG VAGIN+     K   +   R D  + +
Sbjct: 396 LKMTLETKLVDGLFLAGQINGTTGYEEAAAQGCVAGINAGLSYMKKPALDLRRPDGLMAI 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL +KGV EPYRMFTSR+E+R S+R DNAD RLT  G +LG +GE R K + +   +
Sbjct: 456 MIDDLITKGVEEPYRMFTSRSEFRFSIRSDNADFRLTERGYQLGVVGEDRYKHYKEESNQ 515

Query: 471 YNFLRSLLKSLVLTSK----NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
           +  +++ L  L L  +     L   +   + D K  + ++ L+YP  SI  L    P   
Sbjct: 516 FEDIKNTLSELKLIGRYWAPALEGVTYDARDDVKV-SGWKLLAYPGMSINCLL---PHMS 571

Query: 527 KFSSLV-------IERLQ----IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
           KF + V        ERL+    +ES Y  +  R+    ++ +  +K ++P++F+Y++   
Sbjct: 572 KFMNKVPNSFDNISERLRNKIDVESDYEPFRTRERRNIEKFEDYDKFILPQNFNYTNTGN 631

Query: 576 L--SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           L  S+E+   L++++P  L QA K+ G+TP A+  L    K  T    EI 
Sbjct: 632 LKISHEVCSILNVIQPSTLGQAMKLRGVTPTAIMELRKIAKLGTSSNKEIA 682


>gi|308182385|ref|YP_003926512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori PeCan4]
 gi|308064570|gb|ADO06462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori PeCan4]
          Length = 621

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKIDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|281353509|gb|EFB29093.1| hypothetical protein PANDA_004709 [Ailuropoda melanoleuca]
          Length = 709

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/660 (44%), Positives = 418/660 (63%), Gaps = 45/660 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  NFDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ +RVLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYRVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLAVQEGAV 155

Query: 125 AGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                      +  K  +S +V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD
Sbjct: 156 EDLILTDPEPEHAGKCRVSGVVLADGSTVHAESVVLTTGTFLRGVIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            PS  L  +  K  F  GRLKTGTP R+  +++ +    KQ  D   IPFSF+ + +  +
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNPSIPFSFINETVWIK 275

Query: 237 ---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I++EN+  ++      +  GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLENLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP---------------- 337
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  II+P                
Sbjct: 333 WLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIKGLEKAKIIQPDKSSSVFTYFVSFILW 392

Query: 338 -GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
            GY ++YDY++P+++ P+LET  +  LFLAGQINGTTGYEEAAAQG++AGIN++ +  + 
Sbjct: 393 SGYGVQYDYLDPRQITPSLETHLVQRLFLAGQINGTTGYEEAAAQGVIAGINASLRVKRK 452

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGC 455
                SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G K +GC
Sbjct: 453 PPFVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEVGC 512

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYP 511
           + +RR +R +          S+LKS+  +S    K + + SIS  +    R A + L Y 
Sbjct: 513 VSQRRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIPAASISIGKSLPLR-ALDVLKYE 571

Query: 512 DFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +  ++ L    P+  +K+     + ERL+IE++Y +    Q  E KE++ +E   +PKD 
Sbjct: 572 EVDMKLLAKAVPEPLKKYIKCRELAERLKIEATYESVLLHQQQEIKEVQQDEALQLPKDL 631

Query: 569 DYSSL--PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNEI 623
           DY +L   +LS E++EKL   +P  +  AS+I G+TPAA+  LL ++K   +  + +NE+
Sbjct: 632 DYLTLRDVSLSYEVREKLHFSRPETIGAASRIPGVTPAAIINLLRFVKTTQQRQMAMNEL 691


>gi|116192205|ref|XP_001221915.1| hypothetical protein CHGG_05820 [Chaetomium globosum CBS 148.51]
 gi|88181733|gb|EAQ89201.1| hypothetical protein CHGG_05820 [Chaetomium globosum CBS 148.51]
          Length = 856

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/649 (43%), Positives = 394/649 (60%), Gaps = 41/649 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA A AA+ GA TALIT +   +G  SCNP+ GG+GKG ++REIDAL
Sbjct: 162 FDVIVIGGGHAGSEACAAAARAGARTALITPEIDNLGVCSCNPSFGGIGKGTIIREIDAL 221

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
           DGL GR+ D AG+QF++LN  KG AV GPR Q DR LY+  M+ E+ +  NL ++ G V 
Sbjct: 222 DGLAGRIIDKAGVQFKILNKTKGAAVWGPRAQIDRVLYQKHMREELETYPNLSIVLGRVS 281

Query: 125 ----------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                     A  +  K  I+ + ++   ++  + V++TTGTFL G IHIG    P+GRM
Sbjct: 282 DIVIADNHGDADADGAKGKITGVRLESGEVLPTTQVIITTGTFLGGEIHIGMEVYPSGRM 341

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  S     F  GRLKTGTP R+   +I W   ++Q  D+  +PFS++ D + 
Sbjct: 342 GEQATFGLSKSLRDAGFQLGRLKTGTPPRIAKNSINWGILDEQPGDDPPMPFSYLNDTVA 401

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             N Q+ C +T TN  TH ++  N+  +      +K  GPRYCPS+E K++RFGER  H 
Sbjct: 402 VGNDQLLCHLTYTNEATHEVVRANLDKTIHIRETVK--GPRYCPSLESKVIRFGERPRHI 459

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEG ++DV+YPNG+S  +P E Q Q +RTI GLE   +++PGY +EYDY++P+ L 
Sbjct: 460 VWLEPEGFDSDVIYPNGLSMTVPAEAQEQLLRTIRGLENSVMLQPGYGVEYDYVDPRSLK 519

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            +LETK I GLFLAGQINGTTGYEEAA QG+VAGIN+ R +  L  +  SR+D+YIG+MI
Sbjct: 520 RSLETKAIRGLFLAGQINGTTGYEEAAGQGIVAGINAGRAAQGLPPVTLSRSDAYIGIMI 579

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R+S R DNAD RLTP G + G + + R   F   +Q   
Sbjct: 580 DDLITKGVSEPYRMFTSRSEFRLSTRSDNADTRLTPYGRQWGVVSDARWAHFRNDVQLAA 639

Query: 473 FLRSLLKSLVLTSK-----------------NLSSTSISFKQDG------KTRTAYEFLS 509
             ++LL+++ LT                    +SST    K+DG      +  TA   + 
Sbjct: 640 DFKNLLRNMNLTPAEWHQAGIPISHALSSIPGVSSTKTDRKRDGHEVIRLRGITAEHIIH 699

Query: 510 --YPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
              P  + ++  +  P   +K+   V  R+ ++  Y  Y   Q  EA  +  +E   +P 
Sbjct: 700 ARLPGLTEEDTNTKNPHHQQKYPPRVRARVAVDVVYEPYVRAQAAEAARLHRDEALGLPG 759

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D DY ++  LS   ++ LS ++P  L QA +IEG+TPA L  LL  +++
Sbjct: 760 DLDYETVQGLSIVERDVLSRVRPETLAQARRIEGVTPAGLVKLLAAVRR 808


>gi|313206592|ref|YP_004045769.1| glucose inhibited division protein a [Riemerella anatipestifer DSM
           15868]
 gi|312445908|gb|ADQ82263.1| glucose inhibited division protein A [Riemerella anatipestifer DSM
           15868]
 gi|315022087|gb|EFT35116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Riemerella anatipestifer RA-YM]
 gi|325335966|gb|ADZ12240.1| GidA [Riemerella anatipestifer RA-GD]
          Length = 620

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/618 (45%), Positives = 386/618 (62%), Gaps = 5/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN  YDVIV+G GHAGCEAAA AA LG+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MINEVYDVIVVGAGHAGCEAAAAAANLGSKTLLITMNMETIGKMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G VAD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIVADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRLALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N ++ ++      I+  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKQLIIEGNKVAGVITSLGIEIKGKSVVLTNGTFLNGLIHVGDKQLGGGRMGEPKAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F  GR+KTGTP R+DG+T+ + K E+Q  DE    FS++      +Q  C
Sbjct: 181 GITEQLVDLGFTAGRMKTGTPPRVDGRTLDYSKMEEQPGDENPQKFSYLDTPRLTKQRSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN   H I+      S +++G I+S GPRYCPSIEDKI RF ERN HQ+F+EPEG 
Sbjct: 241 HITYTNEIVHDILRSGFDRSPMFNGTIQSLGPRYCPSIEDKINRFAERNRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE+IQ + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 KTIEIYVNGFSSSLPEDIQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLNHTLETKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K ++ +    +R ++YIGV+IDDL +KG 
Sbjct: 361 ENLYFAGQINGTTGYEEAAGQGLIAGINAHNKVHEKEAFILNRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT    KLG   E R ++    I++   L   LK 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADIRLTEKSYKLGLAKEERLQKVEDKIKKSEELEDFLKD 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---ARKFSSLVIER 535
             L  K ++    SI      +   A + L+ P+  ++ L  I      +R +S  V E+
Sbjct: 481 YSLKPKQINPILESIESSPVDQAYRASQILTRPNMKLELLEEIEEIKNTSRNYSDEVREQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFD++ + +LS E K+KL+ +KP  + QA
Sbjct: 541 AEINIKYRGYIEKEKENVAKLHRLENIKIPEDFDFTKINSLSAEAKQKLNSIKPKTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++PA +N+LLI++
Sbjct: 601 SRISGVSPADINVLLIFL 618


>gi|116512725|ref|YP_811632.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125358|sp|Q02X03|MNMG_LACLS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116108379|gb|ABJ73519.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactococcus lactis subsp. cremoris SK11]
          Length = 625

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 380/620 (61%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 6   NYDVIVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + QG V
Sbjct: 66  LGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYAASMKNTVSDQENLTLRQGMV 125

Query: 125 AGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                + EK  +  +     +      V++TTGT LRG I IG+LK  +G      S  L
Sbjct: 126 EELILDDEKQKVIGVRTSTGTQYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     QI C
Sbjct: 186 ADNLHEIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQIPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG 
Sbjct: 246 WLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 306 NTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAKMMRPGYAIEYDVVMPHQLRPTLETKLI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +KG 
Sbjct: 366 SGLFTAGQTNGTSGYEEAAGQGLVAGINAALKIQGKPEFILKRSEAYIGVMIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS 476
           LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G +     E  Q + A++ +E   L S
Sbjct: 426 LEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNS 485

Query: 477 -LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIE 534
             LK L  T + L        +D    T  EFL  P+     +      A +     VIE
Sbjct: 486 EKLKPLPDTQEKLGKLGFGPIKD--ALTGAEFLKRPEVHYDEVIDFIGQAPEVIDRTVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L Q
Sbjct: 544 LIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|312144698|ref|YP_003996144.1| glucose inhibited division protein A [Halanaerobium sp.
           'sapolanicus']
 gi|311905349|gb|ADQ15790.1| glucose inhibited division protein A [Halanaerobium sp.
           'sapolanicus']
          Length = 636

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 388/624 (62%), Gaps = 16/624 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEA+   A++G  T  +T     +  M CNP++GG GK H+VREID
Sbjct: 8   KEYDVIVIGAGHAGCEASLAPARMGFETLTLTVNLDHVAFMPCNPSLGGPGKSHIVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D   IQ R+LN  KGPAV G R Q+D++ Y   M+R + +Q+NLD+ Q  
Sbjct: 68  ALGGEMARNMDETMIQIRMLNTSKGPAVHGLRGQSDKQAYHQRMKRILENQDNLDLKQQI 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + I  ++ +         V+LTTGTFL+G I IG+ K  AG     P+N L 
Sbjct: 128 AEKLVVEDDEIKGVITKTGIFFAGKKVILTTGTFLKGRIIIGEAKFNAGPNQQYPANKLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +      R KTGTP R+  +++ + K E Q  ++ L  FSF ++ +   Q  C +T
Sbjct: 188 GSLKEEGISLRRFKTGTPPRVSKRSLDFSKMEPQPGEDGL-SFSFQSEPLKGEQAMCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH+II EN   + ++SG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +TD
Sbjct: 247 YTTEKTHKIINENKMRTPLFSGVIEGVGPRYCPSIEDKVVRFPDKGRHQLFIEPEGADTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y +G+ST+LP ++Q +  R+I GLE+V I+RPGYAIEYD ++P+EL   LE KKI GL
Sbjct: 307 EYYISGLSTSLPHDVQIEMARSIHGLEEVEIMRPGYAIEYDCVDPEELKLDLELKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAA QG+VAGIN+A      + +   R+++YIGV+IDDL +KG  EP
Sbjct: 367 YTAGQINGSSGYEEAAGQGIVAGINAALSLQNREAMILKRSEAYIGVLIDDLVTKGTPEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRSLLK 479
           YR+ TSRAEYR+ LR DNAD RLTPIG K+G + ++R K +   I    +  ++LR    
Sbjct: 427 YRIMTSRAEYRLLLRQDNADQRLTPIGRKVGLVDDKRYKNYQAKIKGVKKALDYLRDENN 486

Query: 480 SLVLTS------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            +  T+      + L S ++S     K  T    L  P+ S ++L     D  + +  V 
Sbjct: 487 KINPTAEVREKLEELESGNLS-----KPVTLEALLRRPELSYEDLRFFASDLPEITKEVA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  +  + +  E++ IP++ DYS+L  L  E +EKL+ +KP ++ 
Sbjct: 542 EQVEIQVKYKGYIDRQQAQVDQFRKMEEKKIPEELDYSNLENLRLEAREKLARVKPLSIG 601

Query: 594 QASKIEGMTPAALNLLLIYIKKNT 617
           QAS+I G++PA ++ L+IY+++ T
Sbjct: 602 QASRISGVSPADISALMIYLEQYT 625


>gi|22298078|ref|NP_681325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosynechococcus elongatus BP-1]
 gi|34222556|sp|Q8DLF8|MNMG_THEEB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|22294256|dbj|BAC08087.1| glucose inhibited division protein [Thermosynechococcus elongatus
           BP-1]
          Length = 637

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/629 (44%), Positives = 381/629 (60%), Gaps = 35/629 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGAGHAGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GRV+D   +Q R+LN  +GPAV   R Q D+  Y   M++ + +Q NL V +G V 
Sbjct: 71  GGEIGRVSDRTYVQKRLLNASRGPAVWALRAQTDKREYSAVMKQVVENQPNLLVREGMVT 130

Query: 126 GFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               + N  +  +        RC  V+LTTGTFL G I +G   +PAGR G+  +  L  
Sbjct: 131 DLVLDANDTVIGVETYFGVAFRCQAVILTTGTFLGGRIWVGNKSMPAGRAGEFAAEGLSQ 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIECGIT 243
           +  +  F+  RLKTGTPAR+D +++ + K E Q  DE++  FSF  T  +   Q+ C +T
Sbjct: 191 TLARLGFEVDRLKTGTPARVDRRSVDYSKMEPQPPDEQVRWFSFDPTVWVERPQMNCYLT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETHR+I E++  + +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG NT 
Sbjct: 251 RTTPETHRLIREHLHLTPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRNTP 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST LPE +Q Q +RT+PGLE   ++RP YA+EYDY+   + FPTL TKKI GL
Sbjct: 311 ELYIQGFSTGLPEPLQLQLLRTLPGLENCIMLRPAYAVEYDYLPATQCFPTLMTKKIQGL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG+VAGIN+AR   +   I F R +SYIG +IDDL +K + EP
Sbjct: 371 FCAGQINGTTGYEEAAAQGIVAGINAARFVQRKPMITFPRQESYIGTLIDDLCTKELREP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE-------RRQKRFAKYIQEYNFLR- 475
           YRM TSR+EYR+ LR DNAD RLTP+G ++G + E        +Q+R A   Q     R 
Sbjct: 431 YRMLTSRSEYRLVLRSDNADQRLTPLGYEIGLVSEAQWQVFQAKQRRLAAETQRLQTTRI 490

Query: 476 ----SLLKSLVLTSKNLSSTSISFKQ-DGKTRTAYEFLSY-----PDFSIQNLFSICPDA 525
                + +++V  +     ++I+ ++   ++   YE L       PD + Q         
Sbjct: 491 KAHEPVGEAIVTATGQAIKSAIALEELLRRSGVHYELLDRHGLGNPDLTPQEK------- 543

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                   E ++I   YA Y  RQ  E ++I  +E+R +P D DY ++P LS E +EKLS
Sbjct: 544 --------EAVEIAIKYAGYIERQQREIEQIARQEQRPLPVDLDYFAIPTLSMEAREKLS 595

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++P  + QAS+I G+ PA +N LL+Y++
Sbjct: 596 AIRPLTIGQASRIGGVNPADINALLVYLQ 624


>gi|257468580|ref|ZP_05632674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062837|ref|ZP_07927322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688513|gb|EFS25348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium ulcerans ATCC 49185]
          Length = 628

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIV+G GHAGCEA   AA++GA TA+ T     IG MSCNP++GG  K HL+REID
Sbjct: 2   QNFDVIVVGAGHAGCEAGLAAARMGAQTAIFTITLDNIGVMSCNPSLGGPAKSHLIREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ R+LN KKGPAVR  R QAD+  Y   M++ I + +NL  IQG 
Sbjct: 62  ALGGEMGRNIDKTYIQIRILNTKKGPAVRSLRAQADKVRYSKEMKKTIENCDNLTTIQGM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +  ++    R   V++ TGTFLRG+IHIG      GRMG+  S+ L 
Sbjct: 122 VTDIIIEDGKVIGVKTREGVEYRAKFVIIATGTFLRGLIHIGDKHFSGGRMGELSSDDLP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT--DKITNR-QIE 239
            S  K      R KTGTP+R+D +T+ + K E+Q  + + ++ FS  T  +++  R QI 
Sbjct: 182 LSLEKAGLKLARFKTGTPSRIDARTVDFSKIEEQPGETDDILKFSTRTPNEELEGRKQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H II  N + S +++G I   GPRYCPSIEDK+ R+G++N H +FLE EG
Sbjct: 242 CYIAHTNEIVHDIIKNNRERSPLFNGTIHGTGPRYCPSIEDKVFRYGDKNQHHLFLEREG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G+S++LP ++Q + ++ I GLE  +I+R GYAIEYDY+ P+E+  TLE+K 
Sbjct: 302 YDTTEIYLGGLSSSLPTDVQDEMVKNIVGLENAHIMRYGYAIEYDYVPPQEIKYTLESKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSY+G ++DDL SKG
Sbjct: 362 VENLFLAGQINGTSGYEEAGAQGLLAGINAVRKLQGKEPIILDRADSYMGTLVDDLVSKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFT+R+EYR++LR DNAD RL+ IG ++G + E    R  +  ++   ++  LK
Sbjct: 422 TNEPYRMFTARSEYRLALREDNADLRLSKIGYEVGLLPEEEYLRVVQKGKDVEIIKEKLK 481

Query: 480 SLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS 529
              +   N     +  K      +DG   T +E L  PD    ++  I      +   +S
Sbjct: 482 GNYVGPSNPRVNEVLRKYGEAELKDGT--TYFELLRRPDVKYSDIKYIAELSDLELGDYS 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
                +++++  Y+ Y  R M   ++ K  E + +P+D DY SL  +  E K+KL  ++P
Sbjct: 540 KDTEYQVEVQVKYSGYIERSMKMIEKHKSLENKKLPEDLDYDSLENIPKEAKDKLKAVRP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
           +N+ QAS+I G++PA + +LLIY+K
Sbjct: 600 YNIGQASRISGVSPADIQVLLIYLK 624


>gi|148381579|ref|YP_001256120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930874|ref|YP_001385956.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936277|ref|YP_001389363.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. Hall]
 gi|166222925|sp|A7FPL9|MNMG_CLOB1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222926|sp|A5I815|MNMG_CLOBH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148291063|emb|CAL85200.1| glucose inhibited division protein A [Clostridium botulinum A str.
           ATCC 3502]
 gi|152926918|gb|ABS32418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932191|gb|ABS37690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. Hall]
          Length = 625

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/616 (43%), Positives = 387/616 (62%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           K       L   S   K   K  + YE +  P+     + S+       S    E + I 
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPELDYFKVESLDDKRPSLSDDEKEEINII 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I 
Sbjct: 545 AKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRIS 604

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 605 GVSPADISVLLIYMER 620


>gi|317179391|dbj|BAJ57179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F30]
          Length = 621

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E   +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENGEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLE KKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLEAKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  +
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERI 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|131890132|ref|NP_001076478.1| protein MTO1 homolog, mitochondrial [Danio rerio]
 gi|124481809|gb|AAI33158.1| Zgc:158782 protein [Danio rerio]
          Length = 659

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/634 (44%), Positives = 383/634 (60%), Gaps = 24/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIV+GGGHAG EA A A+++GA T LIT K  TIG++SCNP++GG+GKGHLVREI
Sbjct: 24  TQHYDVIVVGGGHAGSEAVAAASRIGAKTLLITQKIQTIGALSCNPSLGGVGKGHLVREI 83

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGR  D AGI F +LN  KGPAV G R Q DR+ Y+  MQ E+LS   + +++G
Sbjct: 84  DALDGVMGRAGDWAGIHFSILNRSKGPAVWGLRAQLDRQRYKDFMQSELLSTPLVTILEG 143

Query: 123 EV---------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            V          G   +  +    +      I  S+VVLTTGTFL G + +G+   P GR
Sbjct: 144 SVQDLLLTEADPGKPGKHKVYGICLANGGGEIHSSSVVLTTGTFLSGALFMGQNTTPGGR 203

Query: 174 MGDSPSNSLFNSFMK--FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-- 229
           MGD PS +  +  +K       GRL+TGTP R+   +I +  T     D    PFSF+  
Sbjct: 204 MGDPPSCAGLSHNLKNVLGLKIGRLRTGTPPRIVKDSIDFSLTSVCLPDSSPTPFSFINK 263

Query: 230 -TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            T      Q+ C +T T     +++ E+   ++    DIK  GPRYCPSIE K++RF  R
Sbjct: 264 HTHCTPKEQLPCFLTYTTPGVEKVVKESSHLNSHIQQDIK--GPRYCPSIESKVLRFPGR 321

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL + ++YP G+S  +P E+Q + IR IPGL+   I  PGY ++YD++ P
Sbjct: 322 Q-HQVWLEPEGLTSSLMYPQGLSMTMPLEMQLRLIREIPGLQHAKIQTPGYGVQYDFVCP 380

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +LFP L+ K   GLFLAGQINGTTGYEEAAAQGL AG+N+ R S  +  +  SRT SYI
Sbjct: 381 TQLFPWLQLKNTQGLFLAGQINGTTGYEEAAAQGLWAGVNAGRTSLSMSPLSLSRTQSYI 440

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRF--- 464
           GV+IDDL   GV EPYRMFTSRAE+R SLRPDNAD RLT  G  ++GC+ E+R  +    
Sbjct: 441 GVLIDDLVCHGVTEPYRMFTSRAEFRTSLRPDNADLRLTIRGFEEIGCVSEQRYNKALLV 500

Query: 465 -AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
            A   Q  + L+S+  S       L   +IS K         E L Y D + Q L S   
Sbjct: 501 QASLKQALSTLQSIHLSAARWRDKLGGVTIS-KTKSSILNGAEVLQYKDVTFQMLASSFQ 559

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKE 582
           +       + ERL++E+ Y  +  +Q  E ++++ EE   +P D DY +LP +LS E++E
Sbjct: 560 ELFGPHLEISERLKVEALYHPHCEKQRREMEKMQTEESLSLPNDIDYLALPISLSQEVRE 619

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            L  ++P  L  A+++ G+TPAA+  L  Y+ +N
Sbjct: 620 ILDRVRPSTLGAAARLPGITPAAIVHLFNYVHRN 653


>gi|169832369|ref|YP_001718351.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Candidatus Desulforudis audaxviator MP104C]
 gi|205831505|sp|B1I6S1|MNMG_DESAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169639213|gb|ACA60719.1| glucose inhibited division protein A [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 657

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/622 (44%), Positives = 379/622 (60%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A+LG  T L+T     +  M CNPAIGG GK HLVREIDAL
Sbjct: 8   YDVIVVGGGHAGCEAALASARLGCRTLLLTLSIDFVALMPCNPAIGGPGKSHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D A IQ R+LN  KGPAVR  R Q D+ LY+  M+R +  Q  LD+ Q  V 
Sbjct: 68  GGEMGRNTDRAAIQVRMLNTGKGPAVRALRAQTDKRLYQEGMRRTVEGQPLLDLKQAMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +      +V +  +      V++TTGT+LR  + +G+    +G  G  P+  L  +
Sbjct: 128 KIIVDGGSARGVVTRTGARFLAPAVIVTTGTYLRSRVLVGETSFESGPNGQFPAVGLAAN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE--CGIT 243
             +  F+ GR KTGTP R+D +T+ + +   Q  DE    FSF        QI+  C +T
Sbjct: 188 LRENGFELGRFKTGTPPRIDRRTLDFSRMTPQHGDEDCPGFSFAAGNRGKEQIQVPCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH II EN+  S +Y+G I+  GPRYCPSIEDK+VRF +R  HQ+F+EPEGL+T+
Sbjct: 248 YTTARTHEIIRENLDRSPLYTGIIQGTGPRYCPSIEDKVVRFADRERHQVFVEPEGLHTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q   +R++PGLEKV I+R GYAIEYDY+ P +L PTLETK +SGL
Sbjct: 308 EMYVQGMSTSLPEDVQLLLLRSLPGLEKVEIVRYGYAIEYDYVVPTQLAPTLETKAVSGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGT+GYEEAAAQG+VAGIN+A+     + +  SR  +YIGV+IDDL +KG  EP
Sbjct: 368 FLAGQINGTSGYEEAAAQGIVAGINAAQSVKNGEPLVVSRAQAYIGVLIDDLVTKGTREP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-- 481
           YR+FTSRAEYR++LR DNAD RLT    ++G +     +RFA   Q+ + +R+ L+ L  
Sbjct: 428 YRIFTSRAEYRLALRQDNADLRLTERAHRIGLVSGAHYERFA---QKKDRVRAELERLDR 484

Query: 482 VLTSKNLSSTSISFKQD----------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
            +    L   S +  QD           +     E L  P+    +L  +       +  
Sbjct: 485 TVVPDPLGRVSRAEVQDWLAARGSAPLSRPCRLSELLRRPEIRYADLVGLGVADPDVAPD 544

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V   ++ +  YA Y  +Q  +    +  E R IP D DYS +  LSNE  +KL+ ++P +
Sbjct: 545 VAAEVENQIKYAGYIQKQAAQVARFEKLEARRIPADLDYSEVRGLSNEAAQKLAEIRPVS 604

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           + QA +I G++PA + +LL+Y+
Sbjct: 605 VGQAGRISGVSPADIAVLLVYL 626


>gi|317008863|gb|ADU79443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori India7]
          Length = 621

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA  +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEAGLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 NKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQDNLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        S  V
Sbjct: 480 CVLTPSKEVLKRLNELGENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLAPLSERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK+F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKNFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|150024117|ref|YP_001294943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacterium psychrophilum JIP02/86]
 gi|205831513|sp|A6GVK0|MNMG_FLAPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149770658|emb|CAL42122.1| Glucose inhibited division protein A [Flavobacterium psychrophilum
           JIP02/86]
          Length = 623

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/629 (43%), Positives = 386/629 (61%), Gaps = 20/629 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA +A LG ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLEEYDVIVVGAGHAGCEAAAASANLGCSTLLVTMSLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR    E +RL ++       N
Sbjct: 61  EIDALGGYSGIVSDNTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLE----GTPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V+G   E N +  I       IR  +VVLT GTFL G+IHIG  +   GR G+
Sbjct: 117 LDFYQEMVSGMVIENNKVLGIKTSLGLTIRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN- 235
           S +  +    +K  F++GR+KTGTP R+DG+++ + K   +  D  + P  F    +T  
Sbjct: 177 SAAYGITEDLVKAGFESGRMKTGTPPRVDGRSLDYSKMNVEAGD--INPSKFSYSDVTKP 234

Query: 236 --RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q +C +T T+L  H I+ E  + S +++G IKS GPRYCPSIEDKI RF +++ HQ+
Sbjct: 235 LVHQRDCHMTYTSLLVHDILREGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQL 294

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           F+EPEG NT  VY NG ST+LPE+IQ + +R++ G EKV   R GYAIEYDY  P +L  
Sbjct: 295 FVEPEGWNTCEVYVNGFSTSLPEDIQFKALRSVVGFEKVKFFRAGYAIEYDYFPPTQLKH 354

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+ AGQINGTTGYEEAA+QGL+AGIN+A K  + + +   R ++YIGV+ID
Sbjct: 355 TLETKLISGLYFAGQINGTTGYEEAASQGLMAGINAALKVKEKEPLILKRDEAYIGVLID 414

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KG  EPYRMFTSRAE+R  LR DNAD RLTP+   LG   + R +R    + E   
Sbjct: 415 DLITKGTEEPYRMFTSRAEFRTLLRQDNADFRLTPMSNTLGLASDARLRRMEHKLNESEK 474

Query: 474 LRSLLKSLVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSI-----CPDAR 526
           + +  K   +T    +   I+ K  +  +T   ++ LS P   + ++             
Sbjct: 475 MVAFFKETSITPTEANPVLIAKKTAEVNQTDKIFKILSRPQIDLSDVLKFENVANYVANN 534

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                ++E+ +I+  Y+ Y  ++   A+++   E   IP+ FDY  + ++S E K+KLS 
Sbjct: 535 NVDQEILEQAEIQVKYSGYIDKERANAEKLTRLEDLKIPEKFDYHQIKSMSIEAKQKLSK 594

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P  + QAS+I G++P+ +++LL+++ +
Sbjct: 595 IRPVTISQASRISGVSPSDISVLLVFLGR 623


>gi|293334449|ref|NP_001169694.1| hypothetical protein LOC100383575 [Zea mays]
 gi|224030947|gb|ACN34549.1| unknown [Zea mays]
          Length = 710

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 379/620 (61%), Gaps = 14/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+DAL
Sbjct: 63  YDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDAL 122

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---DVIQG 122
            G +G++ D   +Q RVLN  KGPAVR  R Q D+  Y + M+  + S ENL   + +  
Sbjct: 123 GGEIGKITDRCYLQKRVLNSSKGPAVRALRAQTDKREYAIEMKNSVESTENLFIREAMAT 182

Query: 123 EVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           EV  G N     + +    D       +VVLTTGTF+ G I +G+  +PAGR G+S S+ 
Sbjct: 183 EVLIGKNDSIEGVRTFFGMD---FYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHG 239

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +     F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  +   Q+ C
Sbjct: 240 LTENLQFLGFETDRLKTGTPPRIDRRTVDFSGLEPQHGDEEVGWFSFDPEFHVEREQMCC 299

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH+I+++N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 300 YLTRTTKETHQIVIDNLDETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGR 359

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +Y  G ST LPE +Q   +RTIPGLE   ++RP YA+EYDY+   +   +L TKKI
Sbjct: 360 NVPELYLQGFSTGLPERLQLSLVRTIPGLENCLMLRPAYAVEYDYLPAYQCSRSLMTKKI 419

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL +K +
Sbjct: 420 EGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIILERESSYIGTLIDDLVTKDL 479

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRS 476
            EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR    Q + A+  QE   LRS
Sbjct: 480 REPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWELYQSKQARIKQEKERLRS 539

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                   +  +++ S    +D  T  A   L  P    + L          S +  E +
Sbjct: 540 TKVPGGEFAAEVTAVSNQPVKDSSTLEA--ILKKPHVQYKLLDEHGCGNENLSRIEKECV 597

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  +  RQ  +  +I  +E R +P+D DY S+  LS E +EKLS ++P  + QAS
Sbjct: 598 EIDIKYEGFIARQQSQLHQIVNQEHRKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQAS 657

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G++PA + +LLI+++ N
Sbjct: 658 RIGGVSPADMTVLLIWMESN 677


>gi|167748064|ref|ZP_02420191.1| hypothetical protein ANACAC_02808 [Anaerostipes caccae DSM 14662]
 gi|167652056|gb|EDR96185.1| hypothetical protein ANACAC_02808 [Anaerostipes caccae DSM 14662]
          Length = 627

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/616 (43%), Positives = 381/616 (61%), Gaps = 7/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA  +A+LG  T   T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 8   YDIVVVGAGHAGCEAALASARLGFKTICFTVSMDSIALMPCNPNIGGSSKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ ++LN  KGPAV   R QAD+++Y +AM + + + +NL V QGEV 
Sbjct: 68  GGEMGVNIDKTYIQSKMLNRSKGPAVHSLRAQADKKMYSMAMTQTMGNTKNLTVRQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T+   ++ +     ++     V+LTTGT+L+     G +    G  G   +N L  S
Sbjct: 128 QILTQNGKVTGVKTYSGAVYHAKAVILTTGTYLKARCIYGDVSNETGPNGLQAANYLTQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                 +  R KTGTPAR+D  +I ++K E+QF D++++PFSF    + I   QI C +T
Sbjct: 188 LKDLGIEMRRFKTGTPARIDKNSIDFNKMEEQFGDDKIVPFSFTNTREDIQRDQISCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG  T+
Sbjct: 248 YTNEETHEIIRENIGRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEGEYTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   R++ GLE V IIR  YAIEYD IN  +L P+LE +KI GL
Sbjct: 308 EMYVGGMSSSLPEDVQYAMYRSVTGLENVKIIRNAYAIEYDCINATQLKPSLEFRKIGGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R+ +YIGV+IDDL +K   EP
Sbjct: 368 FSAGQFNGSSGYEEAAAQGLIAGINAARMIQGKESLVLDRSQAYIGVLIDDLVTKETSEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLK 479
           YRM TSRAEYR+ LR DNAD RL+ IG ++G I E R +      A+  +E N L  +  
Sbjct: 428 YRMMTSRAEYRLLLRQDNADLRLSKIGYEMGLISEERYQNLLEKEARIEKEINRLSRVNV 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 ++L S   S +    + T  E +  P+ +   L  I PD  ++   V E++ I 
Sbjct: 488 GASGKVQDLLSKCQSTELKS-SATMAELIRRPELTYDMLSPIDPDRPEYPEDVREQVNIN 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + ++ K  EK+ IP+   Y  +  L  E  +KLS ++P ++ QAS+I 
Sbjct: 547 IKYEGYIKRQLSQVRQFKRLEKKKIPEGIKYEDIGNLRIEAIQKLSKIRPASIGQASRIS 606

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 607 GVSPADISVLLIYLEQ 622


>gi|255322782|ref|ZP_05363924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter showae RM3277]
 gi|255300124|gb|EET79399.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter showae RM3277]
          Length = 621

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/617 (44%), Positives = 372/617 (60%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDIIVVGGGHAGIEASLAAARMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               ++   I+ +     +  + S +++TTGTFL G+IH+G  K+ AGR+G+  + +L +
Sbjct: 122 TQILSQNGEITGVKTHLGNEYKTSKLIITTGTFLNGLIHVGFNKLEAGRVGELSAKNLSD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GRLKTGT  R+D K+I +   E Q  DE   PFSF T      Q+ C I  
Sbjct: 182 SLRELGLEVGRLKTGTCPRVDAKSIDFSVLEIQGGDEDPSPFSFRTRDFAPTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN+ TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L    
Sbjct: 242 TNVTTHDIIRSNFDKAPLFTGQIEGVGPRYCPSIEDKINRFGDRDRHHLFVEPQTLEATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP E+Q   +R++ G E   I+R GYAIEYDY+ P EL  TLETKK  GL+
Sbjct: 302 YYINGFSTSLPYEVQVAMLRSVKGFENARIVRHGYAIEYDYVQPTELKHTLETKKARGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+A   +  +     R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAGAQGLMAGINAALALDGKEPFVLRRDEAYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL----KS 480
           RMFTSRAEYR+ LR DNA  RL   G +LG + E   ++        N  R L       
Sbjct: 422 RMFTSRAEYRLLLREDNAVLRLGGYGRELGLLDEATFEKIEAI--RSNLTRGLELLNGTE 479

Query: 481 LVLTSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +  T +NL    S+  +   +  T  + ++   F+ + L  + P         +E++  E
Sbjct: 480 ITPTKRNLELLASLDEEIISQNLTLQKIVARKSFTGEKLRKLDPFFEALDEASLEQILTE 539

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q  +   +K      IP+ F +  +  LSNE+ EKL    P  L  AS+I 
Sbjct: 540 AKYQHYIAEQKKQIDRMKDMMSVKIPEGFSFRGISGLSNEVVEKLERFAPPTLFAASEIS 599

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++L IYIK N
Sbjct: 600 GVTPAAIDILHIYIKMN 616


>gi|188527017|ref|YP_001909704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Shi470]
 gi|238691893|sp|B2US42|MNMG_HELPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|188143257|gb|ACD47674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Shi470]
          Length = 621

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|312131266|ref|YP_003998606.1| glucose inhibited division protein a [Leadbetterella byssophila DSM
           17132]
 gi|311907812|gb|ADQ18253.1| glucose inhibited division protein A [Leadbetterella byssophila DSM
           17132]
          Length = 620

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/615 (44%), Positives = 381/615 (61%), Gaps = 8/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA +G+   LIT    TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVVGAGHAGCEAAHAAATMGSEVLLITMNLQTIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G V+D   IQFR+LN  KGPA+  PR Q+DR  + L  + ++     +   Q  V 
Sbjct: 65  GGMSGIVSDETMIQFRMLNRSKGPAMWSPRCQSDRMEFALNWRDKLERNPKVSFWQEMVT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + NI+  +       I   TVVLT GTFL G IHIG+     GR G+S +  +   
Sbjct: 125 DILVKDNIVYGVKTSLGLEIHAKTVVLTNGTFLNGKIHIGEKNFGGGRTGESAAFGITEK 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +   F++GR+KTGTP R+DG+TI ++  ++Q  DE    FS+       +Q  C I+ T
Sbjct: 185 LVSLGFESGRMKTGTPPRVDGRTINYEAMQEQLGDENPEKFSYTDTPKLEKQNSCWISYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL  H  + +    S +++G IK  GPRYCPS+EDKI RF E++ HQIFLEPEG  T  +
Sbjct: 245 NLAVHEELRKGFDKSPMFNGRIKGLGPRYCPSVEDKINRFAEKDSHQIFLEPEGRTTIEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LPE+IQ++ IR IPG E V ++RPGYAIEYDY  P +L  TLET+++  LF 
Sbjct: 305 YVNGFSTSLPEDIQYKAIRKIPGFENVKLLRPGYAIEYDYFPPTQLKLTLETQRVENLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AGIN+ RK+++L      R ++YIGV+IDDL +KG  EPYR
Sbjct: 365 AGQINGTTGYEEAGAQGLIAGINAHRKAHELSAFILKRDEAYIGVLIDDLVNKGTDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R  LR DNAD RLT  G ++G   + R  R  + I+    L   L++  L+ 
Sbjct: 425 MFTSRAEFRTILRQDNADIRLTKKGYEIGLANKERLDRVEEKIKNSEELIHKLETTKLSP 484

Query: 486 KNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFS----ICPDARKFSSLVIERLQIE 539
           + ++   T I+     +  T    +  P+  I+ L      +      ++    E+ +I+
Sbjct: 485 EEINPYLTKINSSPLREKSTISSLIKRPEIGIKELEEGNVLVQEITNTYTKEQKEQAEIK 544

Query: 540 SSYAAYTGRQMIEAKEI-KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
             Y  Y  ++++ A++I K +E +L   +FDY +L +LS E ++KL+  KP NL QAS+I
Sbjct: 545 IKYEKYIEKELLMAEKIAKLDEVKL-NTEFDYMALKSLSIEARQKLTAAKPMNLGQASRI 603

Query: 599 EGMTPAALNLLLIYI 613
            G++PA +++L++Y+
Sbjct: 604 SGVSPADISVLMLYL 618


>gi|291531940|emb|CBK97525.1| glucose-inhibited division protein A [Eubacterium siraeum 70/3]
          Length = 625

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/614 (44%), Positives = 379/614 (61%), Gaps = 9/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  +  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQMTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIQGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYISDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LLKSL 481
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF   ++  N L +    + K+ 
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRF---LERKNILDNETSRIKKAT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   + L+    S      T+     E L  P    ++L     +A +    +I++L+I 
Sbjct: 484 IYPCEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLARFDENAPELEHDIIDKLEIN 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I 
Sbjct: 544 IKYEGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKHRPLNIGQAGRIS 603

Query: 600 GMTPAALNLLLIYI 613
           G+ PA +++LLI++
Sbjct: 604 GVNPADVSVLLIWL 617


>gi|302406004|ref|XP_003000838.1| mitochondrial translation optimization protein [Verticillium
           albo-atrum VaMs.102]
 gi|261360096|gb|EEY22524.1| mitochondrial translation optimization protein [Verticillium
           albo-atrum VaMs.102]
          Length = 693

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/595 (42%), Positives = 368/595 (61%), Gaps = 12/595 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   +G+ SCNP+ GG+GKG ++RE+DALDGL GRV D AGI F+ LN +KGPAV 
Sbjct: 72  LVTPKIDNLGTCSCNPSFGGIGKGVIIRELDALDGLSGRVIDKAGIHFQTLNRRKGPAVW 131

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF----NTEKNI-----ISSIVMQDNS 143
           GPR Q DR+LY+  M+ E+    NL +I G V+        +  I     I+ + +    
Sbjct: 132 GPRAQIDRDLYKKHMREELEGYPNLSIILGSVSDVVLCPQEDPTIGAHSRITGVKLDSGE 191

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           ++  + V++TTGTFL G IHIG    PAGR+G++ +  L  S     F  GRLKTGTP R
Sbjct: 192 ILPTTQVIITTGTFLSGEIHIGMESYPAGRIGEAATTGLSKSLRDAGFSMGRLKTGTPPR 251

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAI 262
           + GK+I + + + Q  ++   PFS+M D + T++QI+C +T TN  TH I+  N+ ++  
Sbjct: 252 ISGKSIDFSELQPQPGEQSPTPFSYMNDTVATDKQIDCYVTYTNATTHDIVRANLGNTIH 311

Query: 263 YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
               +   GPRYCPS+E KI RF ++  H ++LEPEG   DVVYPNG+S  +P E Q Q 
Sbjct: 312 IRETV--LGPRYCPSLESKITRFSDKERHIVWLEPEGFVNDVVYPNGLSMTVPPEAQEQI 369

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           IR+I G+E   +++ GY +EYDYI+P+ L  +LETK +SGL+LAGQINGTTGYEEAA QG
Sbjct: 370 IRSIKGMENAELLQVGYGVEYDYIDPRSLKSSLETKPVSGLYLAGQINGTTGYEEAAGQG 429

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AGIN+ R +  L  +  SR D YIGVMIDDL +KGV EPYRMFT+R+EYR++ R DNA
Sbjct: 430 VIAGINAGRAAKGLAAVSLSRGDGYIGVMIDDLVTKGVSEPYRMFTTRSEYRLTSRADNA 489

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G   G + + R + F+    + + L SLL+S V + +         K++ + R
Sbjct: 490 DYRLTAKGRDWGVVSDARWRAFSDEKMQVDELYSLLESAVKSPQEWMRHGFQVKENSQRR 549

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
            A E L  P+ ++  + ++ P  ++F   +  R+ IE+ YA    RQ  E +    +E  
Sbjct: 550 DACEMLRLPNVTMDEIATVLPVVQRFPERIKSRVAIEALYAPMIARQTSERRNFTRDESL 609

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            +P + DY  +  L+   K+ L   +P  L QA ++EG+TP+    LL +I++ +
Sbjct: 610 RLPANLDYDKVAGLAMHEKQILKTTRPETLAQARRLEGITPSGCIRLLSFIQRQS 664


>gi|217034040|ref|ZP_03439462.1| hypothetical protein HP9810_891g44 [Helicobacter pylori 98-10]
 gi|216943548|gb|EEC22999.1| hypothetical protein HP9810_891g44 [Helicobacter pylori 98-10]
          Length = 621

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 377/627 (60%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL+V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLNVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|160941471|ref|ZP_02088806.1| hypothetical protein CLOBOL_06362 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435617|gb|EDP13384.1| hypothetical protein CLOBOL_06362 [Clostridium bolteae ATCC
           BAA-613]
          Length = 631

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 384/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+++G GHAGCEAA  +A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 11  LEETYDVVIVGAGHAGCEAALASARLGMETIMFTVSVDSIALMPCNPNIGGSSKGHLVRE 70

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + E+L + Q
Sbjct: 71  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQDYSRHMRRTLENTEHLTIRQ 130

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   I  +     ++     V+L TGT+L+     G +  P G  G   +N 
Sbjct: 131 AEVSEIMAEDGKIRGVKTFSGAVYYAKAVILCTGTYLKARCIYGDVSNPTGPNGLQAANH 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L +S  +   +  R KTGTPAR+D K+I + K E+QF D R++PFSF T  D+I   Q+ 
Sbjct: 191 LTDSLREHGIEMFRFKTGTPARVDKKSIDFSKMEEQFGDLRIVPFSFSTNPDEIQKDQVS 250

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  THRII +N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG
Sbjct: 251 CWLTYTNENTHRIIKDNLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFVEPEG 310

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+PGLEKV I+R  YAIEYD IN  +L PTLE KK
Sbjct: 311 LYTNEMYLGGMSSSLPEDVQYAMYRTVPGLEKVKIVRNAYAIEYDCINALQLKPTLEFKK 370

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N+  K    + +   R+ +YIGV+IDDL +K 
Sbjct: 371 ISGLFAGGQFNGSSGYEEAAVQGFMAGVNAVMKIRGQEAVVLDRSQAYIGVLIDDLVTKE 430

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   + +   +++ + ++S +K
Sbjct: 431 NHEPYRMMTSRAEYRLLLRQDNADIRLRKIGHEIGLVCD---EEYEHLLRKMDDIQSEIK 487

Query: 480 SLVLTSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L  T   +S     F ++ G T      T  E +  P+     L  +     +    V 
Sbjct: 488 RLEKTVIGVSDRVQMFLENYGSTLLKSGITLAELVKRPELDYVKLAELDEGRPELPDDVR 547

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ IE  Y  Y  RQM +  + K  E + +P+DFDYS + +L  E  +KL+ ++P  + 
Sbjct: 548 EQVNIEIKYEGYIKRQMQQVAQFKKLEDKKLPEDFDYSEVNSLRREAVQKLNKVQPATIG 607

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL++  +
Sbjct: 608 QASRISGVSPADISVLLVHFTR 629


>gi|322807966|emb|CBZ05541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum H04402 065]
          Length = 625

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/619 (43%), Positives = 390/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVILRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIYENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLMLKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERL 536
           K       L   S   K   K  + YE +  P+    + F + P   K  SL     E +
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|167766871|ref|ZP_02438924.1| hypothetical protein CLOSS21_01388 [Clostridium sp. SS2/1]
 gi|317499288|ref|ZP_07957561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711419|gb|EDS21998.1| hypothetical protein CLOSS21_01388 [Clostridium sp. SS2/1]
 gi|291558410|emb|CBL37210.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SSC/2]
 gi|316893457|gb|EFV15666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 627

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/622 (44%), Positives = 383/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+IV+G GHAGCEAA  AA++G  T   T    ++  M CNP IGG  KGHLV+E
Sbjct: 4   LEEKYDIIVVGAGHAGCEAALAAARMGFETICFTVSMDSVALMPCNPNIGGSSKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   +Q ++LN  KGPAV   R QAD+++Y ++M + + +  NL + Q
Sbjct: 64  IDALGGEMGKNIDKTYLQSKMLNKSKGPAVHSLRAQADKKMYSISMTQVMGNTPNLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   I  +     ++     VVLTTGT+L+     G++    G  G   +N 
Sbjct: 124 GEVTEILVEDGKIKGVKTYSGAVYYAKAVVLTTGTYLKARCIYGEVSNHTGPNGLQAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L +S         R KTGTPAR+D  TI + K  +QF DER++PFSF    + I   QI 
Sbjct: 184 LTDSLKSHGISMRRFKTGTPARIDKNTIDFSKMAEQFGDERIVPFSFTNKEEDIKRDQIS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTTEETHEIIKENIHRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+  +L  +LE K+
Sbjct: 304 EYTNEMYVGGMSSSLPEDVQYKMYHSVPGLENAKIVRNAYAIEYDCIDATQLKASLEFKE 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+ARK  + D I   R+ +YIGV+IDDL +K 
Sbjct: 364 IDGLFSGGQFNGSSGYEEAAAQGLMAGINAARKLQEKDPIILDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSLL 478
             EPYRM TSRAEYR+ LR DNAD RLT IG + G I  ER  K   K  Q  + ++ L 
Sbjct: 424 TQEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEAGLISQERYDKLLVKEQQIEDEMKRLE 483

Query: 479 KSLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
              V  SKN+ S      S + K   K     E +  P+ +  +L  I P+  ++   V 
Sbjct: 484 DINVGASKNVQSLLEELGSTTLKSSAKMT---ELIRRPELTYMDLAPIDPERPEYDLDVQ 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ+ + K+ K  EK+ IP+D DY  + +L  E K+KLS ++P ++ 
Sbjct: 541 EQVNINIKYEGYIKRQLSQVKQFKKMEKKRIPEDIDYEDVGSLRIEAKQKLSKIRPSSIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LLIY+++
Sbjct: 601 QASRISGVSPADISVLLIYLEQ 622


>gi|308063074|gb|ADO04961.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Sat464]
          Length = 621

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 376/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARAHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|168181109|ref|ZP_02615773.1| glucose-inhibited division protein A [Clostridium botulinum NCTC
           2916]
 gi|226951094|ref|YP_002806185.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668094|gb|EDT80073.1| glucose-inhibited division protein A [Clostridium botulinum NCTC
           2916]
 gi|226843485|gb|ACO86151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A2 str. Kyoto]
          Length = 625

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/619 (43%), Positives = 390/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  D++++PFSF+ +K+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERL 536
           K       L   S   K   K  + YE +  P+    + F + P   K  SL     E +
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|308061566|gb|ADO03454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Cuz20]
          Length = 621

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 376/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL  KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVIKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|167770826|ref|ZP_02442879.1| hypothetical protein ANACOL_02179 [Anaerotruncus colihominis DSM
           17241]
 gi|167666866|gb|EDS10996.1| hypothetical protein ANACOL_02179 [Anaerotruncus colihominis DSM
           17241]
          Length = 642

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/621 (44%), Positives = 387/621 (62%), Gaps = 14/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+ VIGGGHAG EAA  AA+LGA T L T     IG+M CNP+IGG  KGHLVREIDA
Sbjct: 14  TYDIAVIGGGHAGIEAALAAARLGAHTVLFTMSLDAIGNMPCNPSIGGTAKGHLVREIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  + +Q+ LDVIQ E+
Sbjct: 74  LGGEMGRAADATMLQSRMLNRGKGPAVHSLRAQTDRKDYHRYMKYAVENQDRLDVIQAEI 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    + S+V    ++     V+L TGT+LRG I +G+    +G  G   ++ L  
Sbjct: 134 VDIRASDGAVESVVTALGALYHARAVILCTGTYLRGRIFVGEYTAQSGPDGLHAADQLTA 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGI 242
           +  +      R KTGTPAR D ++I +   E Q  D+ + PFSF TD   + NR + C I
Sbjct: 194 ALERLGLPLRRFKTGTPARADRRSIDFQLLEVQEGDDPITPFSFETDGGMLKNRAV-CHI 252

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN +THR+I+EN+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EP GL+T
Sbjct: 253 AYTNEQTHRVILENLHRSPLYSGQIEGIGPRYCPSIEDKVVRFSDKPRHQIFIEPMGLDT 312

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+S++LPEE+Q +  RT+ G E++ I+R  YAIEYD ++P  L  TLE K + G
Sbjct: 313 NEVYLQGMSSSLPEEVQVKLYRTVKGFEQIRIMRNAYAIEYDCLDPTCLQATLECKAVRG 372

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL  KG  +
Sbjct: 373 LYGAGQFNGTSGYEEAAAQGLIAGINAARAVQGKTPLVLDRASSYIGTLIDDLVVKGCND 432

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYRM TSR+EYR+ LR DNAD RLTPIG ++G IG    +R+A ++++   +   ++ L 
Sbjct: 433 PYRMMTSRSEYRLILRQDNADMRLTPIGYEIGLIG---AERWAAFLKKRELVEGEIRRLR 489

Query: 482 ---VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                 S+ L++  +S ++     T     E L  P  S  +L    P+  +  + V E+
Sbjct: 490 AVHTAPSEKLNALLVS-RETSPIATGIRLCELLKRPQLSYASLAPFDPERPELPAQVCEQ 548

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y  +Q+ + ++++  E + +P D DY S+  L  E  EKL+ L+P N+ QA
Sbjct: 549 VEITIKYEGYIKKQLEQVEQMRRLEGKQLPGDLDYQSIGGLRLEAVEKLTRLRPLNIGQA 608

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G++PA +++LLI++ ++
Sbjct: 609 SRISGVSPADVSVLLIWLSQH 629


>gi|167759570|ref|ZP_02431697.1| hypothetical protein CLOSCI_01927 [Clostridium scindens ATCC 35704]
 gi|167662797|gb|EDS06927.1| hypothetical protein CLOSCI_01927 [Clostridium scindens ATCC 35704]
          Length = 634

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/626 (43%), Positives = 380/626 (60%), Gaps = 25/626 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL
Sbjct: 15  YDVVVIGAGHAGCEAALATARLGYQTMVFTVSVESIALMPCNPNIGGSSKGHLVREIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDQTFIQSKMLNKSKGPAVHSLRAQADKAWYSRTMRQVLENQDNLDIKQDEVV 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++  ++ +     ++  C  V+L TGT+LR     G +    G  G   +N L + 
Sbjct: 135 KILVDEGKVTGVQTFSGTIYPCRAVILCTGTYLRSRCIYGDVSNYTGPNGLQAANYLTDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                    R KTGTPAR+D  ++ + K E+QF DE++IPFSF TD   +   Q  C +T
Sbjct: 195 LEDLGIKMYRFKTGTPARIDKNSVDFSKMEEQFGDEKVIPFSFTTDPKDVQIDQSSCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  S ++SG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL T+
Sbjct: 255 YTNPRTHEIIRKNLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGLETN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  RT+PGLE V I+R  YAIEYD I+ ++L P+LE K ISGL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRTVPGLENVKIVRNAYAIEYDCIDARQLRPSLEFKNISGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +  GQ NG++GYEEAAAQGL+AGIN+ARK    + I   R+ +YIGV+IDDL +K   EP
Sbjct: 375 YSGGQFNGSSGYEEAAAQGLIAGINAARKLQGKESIILDRSQAYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG ++G I E   KR+ + +++   ++  +K L  
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTRIGYEVGLISE---KRYHRLLEKEELIQKEVKRLTH 491

Query: 484 TS-----------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSS 530
            S           K+  ST +S        T  E +  P+ S + L  I  C        
Sbjct: 492 ASVGANEKVQNLLKSYESTPLS-----SGSTVAELIRRPELSYEMLADIDECRPVLPEEL 546

Query: 531 LVIERLQIESS--YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
                 QI  S  Y  Y  RQ  + ++ K  E + IP+D DY+ + +L  E  +KL   +
Sbjct: 547 EEEVVEQINISIKYDGYISRQKKQVEQFKKLENKKIPEDIDYNLVKSLRLEALQKLKEYR 606

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P ++ QAS+I G++PA +++LL+Y++
Sbjct: 607 PASIGQASRISGVSPADISVLLVYLE 632


>gi|114568075|ref|YP_755229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317084|sp|Q0ATU6|MNMG_SYNWW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114339010|gb|ABI69858.1| glucose inhibited division protein A [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 624

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/622 (41%), Positives = 379/622 (60%), Gaps = 11/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SY+VIVIG GHAGCEAA  +A++G  T L+T     I  M CNP+IGG  K  +VREIDA
Sbjct: 7   SYEVIVIGAGHAGCEAALASARMGCQTLLVTMSIDHIALMPCNPSIGGPAKAQVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D A +Q R +N  KGPAV+  R QAD+  Y L M + + +Q+ LD++  EV
Sbjct: 67  LGGEMALNIDKANVQIRTINTGKGPAVQALRAQADKRQYHLEMLKTLFNQKKLDILMAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    + +IV +  +   C  +VLTTGT+L+G I +G +    G     P+  L  
Sbjct: 127 EDIELSAGRVKAIVTRTGARFECQALVLTTGTYLKGRIIVGDISFDGGPGNQFPAARLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTP R+D K++ + K  +Q  D+R + FSF++  I   Q+ C +T 
Sbjct: 187 SLKRMGLRLGRFKTGTPPRIDSKSVDFSKMIEQPGDKRPLRFSFISPLINRPQLPCWLTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +N +TH+I+M N+  + +Y+G IK  G RYCPS EDK+VRF  ++ HQ+F+EPEG +TD 
Sbjct: 247 SNKKTHQIVMNNLDRAPMYTGIIKGIGTRYCPSFEDKVVRFSHKDSHQLFIEPEGRDTDE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G++T+LPE++Q + +++IPGLE V I+R GYAIEYD I P +L  +LE K + GLF
Sbjct: 307 MYVQGLNTSLPEDVQIEVLKSIPGLENVRIMRTGYAIEYDIIYPSQLKLSLECKTVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+A +  + +     R+++YI VMIDDL +K ++EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGLIAGINAALQVKEKEPFILKRSEAYIAVMIDDLINKEIVEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G ++G + +    R+  Y Q+   L      L  +
Sbjct: 427 RLLTSRAEYRLLLRQDNADLRLTEKGRQIGLVDD---NRWMAYQQKEEILEVESNELKFS 483

Query: 485 SKNLSSTSISFKQDGKTRTA-------YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S   +   ++    GK   A       +E L  P+ SI +        R     ++E+L+
Sbjct: 484 SFTPADEEMADFLSGKNTAAIRDRVSLWELLRRPELSIYDYVEKGW-LRDNDPDILEQLE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  +Q  + K  +  E ++IP D +Y  +  LS E  +KL I+ P ++ QAS+
Sbjct: 543 IQAKYEGYIEKQKEQVKRFEKLENKMIPPDINYDEVYGLSQEAVQKLKIILPASVGQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+ PA +N+LLI+++K   K
Sbjct: 603 IAGVNPADINVLLIFLEKKRRK 624


>gi|19705044|ref|NP_602539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|22095722|sp|Q8RI88|MNMG2_FUSNN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 2; AltName: Full=Glucose-inhibited division
           protein A 2
 gi|19712960|gb|AAL93838.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 633

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/630 (43%), Positives = 381/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    +   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKIIKGIKIREGLEYKAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITN 235
             L  S  K      R KTGTP R+DG+TI +   E+Q  D+ +++ FS  T   D ++ 
Sbjct: 182 EELPLSLEKIGLKLERFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   N     I  K      +DG   T  E L  P+ S +++  I       D
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGENPIKDGS--TLLELLRRPEVSFEDIKYISEEIRGID 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LQGYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|306834572|ref|ZP_07467685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus bovis ATCC 700338]
 gi|304423374|gb|EFM26527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus bovis ATCC 700338]
          Length = 634

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/617 (43%), Positives = 377/617 (61%), Gaps = 8/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  L +
Sbjct: 128 EEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDK+VRF ++  HQ+FLEPEG  T
Sbjct: 248 TYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKVVRFADKERHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L +L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLSTLK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQ 537
           +      N    ++ FK      TA EF+  P+  + I   F + P   K  S V+E L+
Sbjct: 488 IKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSF-VGPAEEKLDSKVVELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E  +K   + P  + QAS+
Sbjct: 547 TEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEACQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++L++Y++
Sbjct: 607 ISGVNPADISILMVYLE 623


>gi|241949319|ref|XP_002417382.1| mitochondrial tRNA modification protein, putative [Candida
           dubliniensis CD36]
 gi|223640720|emb|CAX45033.1| mitochondrial tRNA modification protein, putative [Candida
           dubliniensis CD36]
          Length = 694

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/631 (42%), Positives = 389/631 (61%), Gaps = 29/631 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  HPVIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V 
Sbjct: 98  DGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVE 157

Query: 126 GFNTEKNI------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
               E  +            +  +++ D  +++   VV+TTGTFL G IHIG    P+GR
Sbjct: 158 DIIIEPVLNGEDFSGRAFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSGR 217

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG+  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK+
Sbjct: 218 MGEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTIDFKGLIEQPSDFPPQPMSYMNDKV 277

Query: 234 --TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              ++ ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ H
Sbjct: 278 DLEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRESVK--GPRYCPSIESKVIKFPNKDYH 335

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+EL
Sbjct: 336 YVWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPREL 395

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETK ++GL+LAGQINGTTGYEEAAAQG VAGIN+     +   +   R D  + ++
Sbjct: 396 KSTLETKLVNGLYLAGQINGTTGYEEAAAQGCVAGINAGLSYLQKPLLELKRPDGLVAIL 455

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+E+R S+R DNADNRLT  G  LG + ERR + F K   ++
Sbjct: 456 IDDLITKGVEEPYRMFTSRSEFRFSIRSDNADNRLTQKGYDLGVVSERRYQFFKKESDQF 515

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLF--------S 520
             ++++L  L L+ K  +      K D +     + ++ LSYP  SI NL          
Sbjct: 516 WEIKNVLSELKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINNLLPHMSDFMGQ 575

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SN 578
           + P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S+
Sbjct: 576 VPPCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKISH 635

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           E+   L+I++P  + QA  ++G+TP A+N L
Sbjct: 636 EVCTILNIVQPTTIGQAQSLQGITPTAINEL 666


>gi|210134414|ref|YP_002300853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori P12]
 gi|226700963|sp|B6JKE5|MNMG_HELP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|210132382|gb|ACJ07373.1| glucose inhibited division protein A [Helicobacter pylori P12]
          Length = 621

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E   I  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIVENGEIVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  Q        L+ 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQAIQENLKRLRE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|197302261|ref|ZP_03167320.1| hypothetical protein RUMLAC_00988 [Ruminococcus lactaris ATCC
           29176]
 gi|197298692|gb|EDY33233.1| hypothetical protein RUMLAC_00988 [Ruminococcus lactaris ATCC
           29176]
          Length = 630

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/617 (44%), Positives = 374/617 (60%), Gaps = 13/617 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 15  YDVAVVGAGHAGCEAALATARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVRELDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENLD+ Q EV 
Sbjct: 75  GGEMGKVIDRTFIQSKMLNSSKGPAVHSLRAQADKANYSRTMRQVLQKQENLDIRQMEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   I+ +     ++ RC  VVL TGT+L+     G++    G  G   +N L +S
Sbjct: 135 ELLTEDGKITGVQTYSGAIYRCRAVVLCTGTYLKARCIYGEISTHTGPNGLQSANYLTDS 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                    R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   Q  C +T
Sbjct: 195 LKALGIRMYRFKTGTPARIDKTSIDFTKMEEQKGDERVVPFSFTTDPESVQIDQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG  T 
Sbjct: 255 YTNERTHEIIRSNLNRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEPEGNETT 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  R++PGLE   IIR  YAIEYD I+ ++L  TLE K I GL
Sbjct: 315 EMYVGGMSSSLPEDVQYEMYRSVPGLEHAKIIRNAYAIEYDCIDARQLKSTLEFKAIEGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGL+AGIN+ARK    + I   R+  YIGV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAAAQGLIAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-------AKYIQEYNFLRS 476
           YRM TSRAEYR+ LR DNAD RL+ IG ++G I + R  R        AK I+  N +  
Sbjct: 435 YRMMTSRAEYRLLLRQDNADIRLSAIGHEVGLIDDERYARLLKKEELIAKEIERVNHVN- 493

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L +     K L +   +    G T    E +  P+ S + L  +     +    V E++
Sbjct: 494 -LGTSEAVQKLLEAYGSTPLTSGTTLA--ELIRRPELSYEKLAPVDNARPELPYDVKEQV 550

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQM + ++ K  E + IP++ DY S+ +L  E K+KL+ ++P ++ QAS
Sbjct: 551 DINIKYDGYIKRQMRQVEQFKKLENKRIPENIDYDSIQSLRLEAKQKLNQIRPASIGQAS 610

Query: 597 KIEGMTPAALNLLLIYI 613
           +I G++PA +++LL+Y+
Sbjct: 611 RISGVSPADISVLLVYL 627


>gi|21675089|ref|NP_663154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium tepidum TLS]
 gi|30580424|sp|Q8KA85|MNMG_CHLTE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21648330|gb|AAM73496.1| glucose inhibited division protein A [Chlorobium tepidum TLS]
          Length = 621

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/625 (42%), Positives = 376/625 (60%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QAD+  Y L M+R +  + N+D++Q  V 
Sbjct: 62  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G +      SS+ ++    I+    +L  GTFL G+IHIG    P GR   + P   L  
Sbjct: 122 GVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +    +Q  D   +PFSF +  + NR  + C +T
Sbjct: 182 SLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVSCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T 
Sbjct: 242 KTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTV 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYD+ +P ++  T+ET+ +  L
Sbjct: 302 EMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 362 FFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL  IG     +      R    I+       ++K+  +
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAKV 481

Query: 484 TSKNLSSTSISFK-QDGKTRT-AYEFLSYPDFSIQNLF-----------SICPDARKFSS 530
           T   +++  ++   Q+ KT   A   +  P  S+Q++             +C D R    
Sbjct: 482 TPAEINTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSAAEELCNDPR---- 537

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E++QIE  Y  Y  R+ + A  I   +   IP +F+Y SL +LS+E +EKL   +P 
Sbjct: 538 -VAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPA 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +++L+I + +
Sbjct: 597 TIGQASRILGVSPSDVSILMIRLGR 621


>gi|20809124|ref|NP_624295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter tengcongensis MB4]
 gi|254479395|ref|ZP_05092728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
 gi|22095715|sp|Q8R6K9|MNMG2_THETN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 2; AltName: Full=Glucose-inhibited division
           protein A 2
 gi|20517804|gb|AAM25899.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Thermoanaerobacter tengcongensis MB4]
 gi|214034664|gb|EEB75405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
          Length = 633

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 383/619 (61%), Gaps = 14/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  +A+LG +T         I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVCVVGLGHAGSEAALASARLGLATVGFATNLDAIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+ 
Sbjct: 68  GGEMAVNTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQANMKHTLERQKNLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +V +  ++ +C   ++TTGTFLRG + IG++   +G  G  P+  L  +
Sbjct: 128 DILVENNKVVGVVTKLGAIYKCKACIITTGTFLRGRVIIGEVGFESGPSGLFPAKELSEA 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R  T TP R+D +T+ + K   Q  DE + PFSFM DKI   QI C +T T
Sbjct: 188 IKRLGFKMMRFNTSTPPRVDKRTVDFSKMIMQPGDEVITPFSFMHDKIEIEQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH+II +NI  + +Y+G+++  G RYCPSIEDK+++F  R+ HQIF+EPEG +T  +
Sbjct: 248 NEKTHKIIRDNIHRAPLYTGEVEGVGVRYCPSIEDKVMKFPHRDRHQIFVEPEGRDTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ ++ PE++Q + + TIPGLE   I+RP YAIEYD I+P +L  TLETK + GL+ 
Sbjct: 308 YIQGLFSSFPEDLQMEILSTIPGLENAKIMRPAYAIEYDCIDPTQLKATLETKLVEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAALKILGKPPLILDRSQAYIGILIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT IG ++G + E R ++F  K IQ    +  L   +V  
Sbjct: 428 MLTSRAEYRLILRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMMRLPTVMVRP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDF---SIQNLFSICPDARKFSSLVIERL 536
           ++ +++  IS    G T        Y  L  P+    S + L    PD       V E++
Sbjct: 488 TEEVNNFLIS---RGSTPLVSGVDLYTLLKRPEIDYKSTKFLDPTRPD--DILDSVAEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS
Sbjct: 543 DINIKYEGYILKQLRQVEQFKAMENKKIPEDIDYYQVHGLSNEAKEKLSKIRPTSVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 603 RISGVSPADISVLLIYLQQ 621


>gi|192988505|pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988506|pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988507|pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988508|pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
          Length = 641

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/625 (42%), Positives = 376/625 (60%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 22  YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QAD+  Y L M+R +  + N+D++Q  V 
Sbjct: 82  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVI 141

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G +      SS+ ++    I+    +L  GTFL G+IHIG    P GR   + P   L  
Sbjct: 142 GVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTE 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +    +Q  D   +PFSF +  + NR  + C +T
Sbjct: 202 SLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVSCYLT 261

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T 
Sbjct: 262 KTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTV 321

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYD+ +P ++  T+ET+ +  L
Sbjct: 322 EMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENL 381

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 382 FFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEP 441

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL  IG     +      R    I+       ++K+  +
Sbjct: 442 YRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAKV 501

Query: 484 TSKNLSSTSISFK-QDGKTRT-AYEFLSYPDFSIQNLF-----------SICPDARKFSS 530
           T   +++  ++   Q+ KT   A   +  P  S+Q++             +C D R    
Sbjct: 502 TPAEINTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSAAEELCNDPR---- 557

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E++QIE  Y  Y  R+ + A  I   +   IP +F+Y SL +LS+E +EKL   +P 
Sbjct: 558 -VAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPA 616

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +++L+I + +
Sbjct: 617 TIGQASRILGVSPSDVSILMIRLGR 641


>gi|57505416|ref|ZP_00371344.1| glucose inhibited division protein A [Campylobacter upsaliensis
           RM3195]
 gi|57016241|gb|EAL53027.1| glucose inhibited division protein A [Campylobacter upsaliensis
           RM3195]
          Length = 616

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/618 (44%), Positives = 377/618 (61%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAG EA+A AAK+G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   YDIIVIGGGHAGIEASAAAAKMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDRYRIIARNKLLQLKNLEISQEQVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I  +    N       ++LTTGTFL G+IHIG+ +I AGR+G+  S  L NS
Sbjct: 122 KLIFKNDEIKGVRTNLNHNYYAKKLILTTGTFLNGLIHIGENQIEAGRVGEMASIKLGNS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K D   GRLKTGT  R+D K+I +   E Q  D    PFSF T   +  Q+ C I RT
Sbjct: 182 LRKLDLKIGRLKTGTCPRVDAKSIDFSVLEIQHGDVEPKPFSFRTKNFSPTQLPCFIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL TH+II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+       
Sbjct: 242 NLNTHQIIKDNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTKEASEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +++I G E   I R GYAIEYDYI+P EL+ +LE KK+  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLKSIKGFENAKITRFGYAIEYDYIDPTELYHSLELKKVKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN+A      +     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINAALALEDREPFVLGRDEAYIGVLIDDLVMKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE----YNFLRSLLKSL 481
           MFTSRAE+R+ LR +NA  RL   G K G + E+  +   K  +      NFL  L K L
Sbjct: 422 MFTSRAEFRLLLREENAIIRLGKYGFKFGLLSEKEFQMIEKSRENIERGLNFL--LTKEL 479

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             +++N    +   K+ G+ +     +  + ++   F +  L  +        +  ++ +
Sbjct: 480 TPSNEN----NAFLKELGEEKITSIVSLQKVVARASFDVGKLRKLDSFFENMDAYSLQEI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K      IP DFD+ ++  LSNE+ EKL   +P  L  AS
Sbjct: 536 LSEAKYYHYITMQKAQVEKMKDLSSLKIPADFDFKNVSGLSNEVVEKLEKFRPPTLFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 EISGITPAALDILHIYIK 613


>gi|315925603|ref|ZP_07921813.1| glucose inhibited division protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621144|gb|EFV01115.1| glucose inhibited division protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 624

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 377/617 (61%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAGCEAA   A++G  T L+     ++  M CNP+IGG GKGHLVREIDAL
Sbjct: 8   YDTIVIGAGHAGCEAALATARMGKETLLLAINLDSVAMMPCNPSIGGTGKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAV   R QAD++ Y+  M+  + + E+L + Q E  
Sbjct: 68  GGEMGKNIDATMIQCRMLNTGKGPAVHSLRAQADKKAYQFRMKAVVENTEHLTLRQQEAT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I  + +   +   C T V+ TGT+L+G I +G+++   G  G  P+  L +S
Sbjct: 128 KLIVEDQKIVGVQVVTGATYTCETCVVCTGTYLKGKIFMGEVQYEGGPNGMFPARFLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D KT+ + K   Q  DE + PFSF T+ I   QI+C +T T
Sbjct: 188 LEEAGFHLQRFKTGTPARVDAKTLDYTKMIVQKGDEIITPFSFETEAIAIDQIDCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  THRII  N+  S + +GD+   GPRYCPSIE K++RF +++ HQ+F+EPEG NT  V
Sbjct: 248 NEATHRIINANLDRSPLVTGDVVGVGPRYCPSIETKVMRFADKDHHQMFMEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S+ LPE++Q    RT+PG+E V  +R  YAIEYD I+P EL  TLE+K+I GLF 
Sbjct: 308 YVQGMSSCLPEDVQIALYRTVPGMEHVAFMRSAYAIEYDCIHPTELKATLESKRIRGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEA AQG+VAGIN+A   ++ + +   R+ +YIGV+IDD+ ++   EPYR
Sbjct: 368 AGQINGTSGYEEAGAQGIVAGINAALLLDRKEPMILDRSQAYIGVLIDDIINEDASEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           M TSRAEYR+ LR DNAD RLTPIG ++G I E R +RF   +Q+   +   +  +  +T
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTPIGHRVGLISEERYQRF---LQKKTAIADEVDRMGCVT 484

Query: 485 SKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                S +    + G T         + +  P+ +  N  ++ P      + V E ++I+
Sbjct: 485 VPPSESANAILSRLGTTVLKSGMPLGQLMKRPEINYANTAALDPQRPALPNNVCEEVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ + ++ K  E + IP+   Y  +  L  E  EKL+ ++P +L QAS+I 
Sbjct: 545 LKYEGYISKQIKQVEQFKKLESKRIPEGLHYHHIEGLRLEAAEKLNAVQPMSLGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKN 616
           G++PA + +L +Y++ +
Sbjct: 605 GVSPADIAVLHVYLENH 621


>gi|157414281|ref|YP_001485147.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9215]
 gi|166989738|sp|A8G7I0|MNMG_PROM2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157388856|gb|ABV51561.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9215]
          Length = 655

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/629 (43%), Positives = 378/629 (60%), Gaps = 17/629 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----- 117
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL     
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 118 -----DVIQGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                D+ + E  G N++K +   I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKSEQVGLNSKKVVKKRIKGVKTFFGSYYSAKSVIITAGTFLEGKIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D K+II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKKSIIFDELDTQPSTAAGKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTSKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 308 KSHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSKCKMLRPAYAVEYEYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWSAYEEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I      K +   T  E L  P+F   +L       
Sbjct: 488 KLLEEEKLRLNNTRLKNTDEISKKIELDTGSKIKGSTTLKELLKRPNFHYLDLIKYNLAK 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGYSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +KP N   ASKI G++ A L  LL+++K
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLK 636


>gi|302877169|ref|YP_003845802.1| glucose inhibited division protein A [Clostridium cellulovorans
           743B]
 gi|307687868|ref|ZP_07630314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium cellulovorans 743B]
 gi|302580026|gb|ADL54038.1| glucose inhibited division protein A [Clostridium cellulovorans
           743B]
          Length = 628

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/616 (43%), Positives = 382/616 (62%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAG EAA  AA++G +T L T    ++G M CNP IGG  KGHLVREIDAL
Sbjct: 8   YDVVVVGAGHAGVEAALAAARMGMNTLLTTINLDSVGFMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+R +   +NL++ Q EV 
Sbjct: 68  GGEMGVNIDKTFIQSRMLNTSKGPAVHSLRAQADKKRYSDEMKRVVEGTDNLNLRQIEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  +  ++ +  +   VVL TGT+L+  + IG +   +G  G  P++ L  S
Sbjct: 128 AIDVEDGKVVGVQTRNGAYFKTKAVVLATGTYLKAKVIIGDVSYHSGPNGLQPADDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR+  K++ + K  +Q  DE++ PFSF  D +   QI C +T T
Sbjct: 188 LLDIGVELRRFKTGTPARISSKSVDFSKMIEQPGDEKITPFSFQNDYLERDQISCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ET  +I  NI  S +Y+G I   GPRYCPSIEDKI+RF +++ HQ+F+EPEG NTD +
Sbjct: 248 NEETQNVIKANIDRSPLYNGSIVGTGPRYCPSIEDKIMRFPDKDRHQVFIEPEGENTDEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD INP +L  +LE K I+GLF 
Sbjct: 308 YVGGMSSSLPEDVQIAMYRTVPGLENVEILRTAYAIEYDSINPLQLKLSLEFKNINGLFG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NG++GYEEAA QGL+AGIN+  K    + +   R+D YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQLNGSSGYEEAACQGLIAGINAVLKIRGEEPLILKRSDGYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSLV 482
           M TSRAEYR+ LR DNAD RLT +G K+G + +   +RF K++   N +      +KSL 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGRKVGLVSD---ERFEKFLSRKNAIEIELERIKSLQ 484

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T+K   N    SI      K  + YE +  P+     + ++  D  +    V E++ I 
Sbjct: 485 ITNKTSVNEFLESIGSVALRKPISLYELIKRPELDYYKVEALDVDRSELLDSVKEQVNIA 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  +Q+ + ++ K  E R IP+D +Y+ +  L  E  +KL    P N+ QAS+I 
Sbjct: 545 AKYEGYIEKQLEQVEQFKKFENRRIPEDINYNDIKGLRIEAIQKLQKTNPINIGQASRIS 604

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 605 GVSPADVSVLLIYMEQ 620


>gi|223038982|ref|ZP_03609274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter rectus RM3267]
 gi|222879955|gb|EEF15044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter rectus RM3267]
          Length = 621

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/617 (44%), Positives = 370/617 (59%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDIIVVGGGHAGIEASLAAARMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +    I+ +     +  R S +++TTGTFL G+IH+G  K+ AGR+G+  + +L +
Sbjct: 122 TQILSRNGEITGVKTHLGNEYRTSKLIITTGTFLNGLIHVGFNKLEAGRVGELSAKNLSD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S      + GRLKTGT  R+D K+I +   E Q  DE   PFSF T      Q+ C I  
Sbjct: 182 SLRDLGLEVGRLKTGTCPRVDAKSIDFSVLEIQGGDEEPSPFSFRTRDFAPTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L    
Sbjct: 242 TNETTHDIIRSNFDKAPLFTGQIEGVGPRYCPSIEDKINRFGDRDRHHLFVEPQTLEATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP E+Q   +R++ G E   I+R GYAIEYDY+ P EL  TLETKK  GL+
Sbjct: 302 YYINGFSTSLPYEVQVAMLRSVRGFENARIVRHGYAIEYDYVQPTELKHTLETKKARGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+A   +  +     R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAGAQGLMAGINAALALDGKEPFVLRRDEAYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL----KS 480
           RMFTSRAEYR+ LR DNA  RL   G +LG + E   ++        N  R L       
Sbjct: 422 RMFTSRAEYRLLLREDNAVLRLGGYGRELGLLDEATFEKIEAI--RSNLTRGLELLNGTE 479

Query: 481 LVLTSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +  T +NL    S+  +   +  T  + ++   F+ + L  + P         +E++  E
Sbjct: 480 ITPTKRNLELLDSLDEEIISQNLTLQKIVARKSFTGEKLRKLDPFFEALDEASLEQILTE 539

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q  +   +K      IP+ F++  +  LSNE+ EKL    P  L  AS+I 
Sbjct: 540 AKYQHYIAEQKKQIDRMKDMMSVKIPEGFNFRGISGLSNEVVEKLERFAPPTLFAASEIS 599

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+++L IYIK N
Sbjct: 600 GVTPAAIDILHIYIKMN 616


>gi|313112542|ref|ZP_07798207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625142|gb|EFQ08432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 634

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/615 (44%), Positives = 375/615 (60%), Gaps = 10/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DAL
Sbjct: 18  YDVIVIGAGHAGIEAAHAAATLGARTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q EV 
Sbjct: 78  GGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEVV 137

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L +S
Sbjct: 138 SIETENGRVKGVVTQLNGEYSAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTDS 197

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGIT 243
                    R KTGTPAR+  ++I + K E Q  D    L PFSFMTD   + ++EC I 
Sbjct: 198 LKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDNELQPFSFMTDAPMHNKVECWIA 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT+
Sbjct: 258 YTNPETHRIILDNIRRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENTE 317

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + GL
Sbjct: 318 EMYLQGASSSLPEDVQNAFYRSIKGFENIEIMRPAYAIEYDCVDPTSLEATLESKVVRGL 377

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AG+N+AR +   + +   R  SY+G ++DDL +KGV++P
Sbjct: 378 YGAGQFNGTSGYEEAAAQGLLAGLNAARNALGKEQLILPRHTSYLGTLVDDLVTKGVMDP 437

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRM TSR+EYR++LR DNAD RLTPIG + G +   +  R+AKY    + L   R  L+ 
Sbjct: 438 YRMMTSRSEYRLTLRQDNADQRLTPIGREYGLV---QDDRWAKYQHTQSILEAERRRLRE 494

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             L + +L +   +       +   A E L  P+ S   L  +     + + ++ ERL+ 
Sbjct: 495 THLRTADLRTAMEAAGLAPAAEGGIAEELLRRPEISYPLLAGVIGWGEQITPMLAERLET 554

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ    +++   EK LIP DF+Y+ L  L+ E +EKL+ ++P NL QA +I
Sbjct: 555 EIKYAGYIARQDRMIRDVARHEKTLIPDDFEYADLAGLTLEAREKLARIRPKNLGQAGRI 614

Query: 599 EGMTPAALNLLLIYI 613
            G++P+ +  L I +
Sbjct: 615 PGVSPSDVAQLSIAL 629


>gi|171909507|ref|ZP_02924977.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobium spinosum DSM 4136]
          Length = 626

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/635 (43%), Positives = 380/635 (59%), Gaps = 40/635 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV G GHAG EAA  AA+LG  TA++T    TI  MSCNPAIGGL KGHLVREID
Sbjct: 8   KVYDVIVCGAGHAGVEAAMAAARLGCETAILTQNLDTITQMSCNPAIGGLAKGHLVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG   DA GIQFR+LN  KGP+V+ PR Q D++ Y+  M+  + +Q +LD+ QG 
Sbjct: 68  ALGGVMGSNTDATGIQFRMLNATKGPSVQAPRAQCDKKAYQFRMKWLVENQPHLDLHQGN 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E + ++ +      + R  ++V+++GTF+RG++H+G      GRMGD  S +L 
Sbjct: 128 AAEILVENDQVTGVRTSLGLIYRAKSIVISSGTFMRGLLHVGLQNQAGGRMGDGLS-TLS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-------- 235
           +S     F+  R KTGTP R++G++I + + E Q  D     FS+++  + +        
Sbjct: 187 DSLRHLGFEVQRFKTGTPCRINGRSIDYSQCELQPGDTPPPRFSYLSGVLPDDSELFTLN 246

Query: 236 ---------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                     Q  C IT TN  TH +I  N+  S +Y G I+  GPRYCPSIEDK+VRF 
Sbjct: 247 KWSPELFHVEQSPCWITYTNPRTHEVIRANLDKSPMYCGVIEGIGPRYCPSIEDKVVRFA 306

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E+  HQIFLEPEG +T   Y NG+ST+LP E+Q++FIR+I GLE   IIRPGYA+EYDY 
Sbjct: 307 EKERHQIFLEPEGRHTREYYVNGVSTSLPFEVQYEFIRSIKGLENAEIIRPGYAVEYDYC 366

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P +L  TLETK++SGL+ AGQINGT+GYEEAA QGL AG N+A K          R+++
Sbjct: 367 PPTQLQSTLETKRVSGLYFAGQINGTSGYEEAAGQGLWAGTNAALKVKGEAPFTLKRSEA 426

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y+ VM+DDL +KG  EPYR+FTSRAEYR+ LR DNAD RLTP   + G +   R+   A 
Sbjct: 427 YMAVMVDDLITKGTTEPYRLFTSRAEYRLLLRQDNADLRLTPKAAERGMVDAFRKAHTAS 486

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DA 525
            I++   L+  + S    +  L+                +++  P    +N F+  P D 
Sbjct: 487 KIEQLAELKKFVASTTFENTRLA----------------QWIKRP----ENAFARLPSDL 526

Query: 526 R-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
           R  +SS +    + +  YA Y  RQ     +    E ++IP   DYS++  L  E   KL
Sbjct: 527 RGTWSSELWTVAENDLKYAGYITRQEDMVDKTSRMEDKIIPDWVDYSAMKGLKKEAMLKL 586

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             ++P    QA++I+G+TPA L ++ + +KK  V+
Sbjct: 587 QSIRPTTFGQAARIQGVTPADLAVVSVVLKKGGVE 621


>gi|298491295|ref|YP_003721472.1| glucose inhibited division protein A ['Nostoc azollae' 0708]
 gi|298233213|gb|ADI64349.1| glucose inhibited division protein A ['Nostoc azollae' 0708]
          Length = 646

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/633 (43%), Positives = 374/633 (59%), Gaps = 30/633 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  AYDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +G V
Sbjct: 72  LGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKRKYAAVMKGIVENQENLTIREGMV 131

Query: 125 A----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                G N E  II  +         C  V+LTTGTFL G I +G   + AGR G+  + 
Sbjct: 132 TDLVLGANDE--IIIGVETYFGVAFECKAVILTTGTFLGGKIWVGNKSMEAGRAGEFAAL 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF   +   R QI 
Sbjct: 190 GLTETLNRLGFETGRLKTGTPARVDKRSVNYSKMEIQPGDEEVRWFSFDPQEWVEREQIP 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF +   HQIF+EPEG
Sbjct: 250 CHMTRTTKETHRLIQENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADTESHQIFIEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            N   +Y  G ST LPE +Q   +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 310 RNIPELYIQGFSTGLPENLQLLMLRSLPGLENCLMLRPAYAVEYDYLPGTQCYPTLMTKK 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGLVAGIN+AR     + I F R  SYIG ++DDL +K 
Sbjct: 370 VEGLFCAGQINGTTGYEEAAAQGLVAGINAARFVRGEEIIIFPREQSYIGTLVDDLCTKD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR          ++   S  K
Sbjct: 430 LREPYRMLTSRSEYRLLLRSDNADQRMTPLGREIGLIDDRR----------WDLFTSKQK 479

Query: 480 SLVLTSKNLSSTSISFKQD------GKTRTAY-------EFLSYPDFSIQNLFSICPDAR 526
            +V   + L ST I   ++        T+ A        + L  P     +L        
Sbjct: 480 QIVAEKERLYSTRIKEHEEVGRAIAQNTQQAIKGSISLADLLRRPGIHYIDLERYALGNT 539

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             +    E  +I+  Y+ Y  RQ  + ++I  +  R +P D DY+++  LS E +EKL+ 
Sbjct: 540 SLNQAEKEGAEIDIKYSGYLARQQNQIEQIARQVNRSLPVDLDYAAIDTLSKEAREKLNK 599

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +KP  + QA++I G+ PA +N LLIY++    K
Sbjct: 600 VKPLTIGQAARIGGVNPADINALLIYLEIRKTK 632


>gi|15644841|ref|NP_207011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 26695]
 gi|2494734|sp|P56138|MNMG_HELPY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2313303|gb|AAD07281.1| glucose inhibited division protein (gidA) [Helicobacter pylori
           26695]
          Length = 621

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKE 479

Query: 481 LVLTSK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            +LT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 YILTPSKEVLKRLDELDENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|318040758|ref|ZP_07972714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CB0101]
          Length = 643

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/619 (42%), Positives = 374/619 (60%), Gaps = 11/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAAITAARLGCSTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  +Q R+LN  +GPAV   R Q D+  Y   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATALQKRILNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREAMVT 130

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G   E        I+ +     S      VVLT GTFL G I +G   + AGR G+  + 
Sbjct: 131 GLEVEGTPGEDARITGVRTYFGSTYSAGAVVLTAGTFLGGQIWVGNQSMSAGRAGEQAAE 190

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +     F  GRLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++   + 
Sbjct: 191 GLTEALEALGFQMGRLKTGTPARVDRRSIALDQLEEQPSDAHERYFSFDPASWVSGEPMS 250

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF ++  HQIFLEPEG
Sbjct: 251 CHITRTTAATHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFVDKESHQIFLEPEG 310

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   +L P+LETK+
Sbjct: 311 RDTPEIYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPATQLKPSLETKR 370

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQ+NGTTGYEEAAAQGLVAG+N+ R+        F R  SYIG MIDDL +K 
Sbjct: 371 VQGLYSAGQLNGTTGYEEAAAQGLVAGLNAVRQLRGETPTHFPREGSYIGTMIDDLITKD 430

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + + +           L+
Sbjct: 431 LREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWETYTRKQDAIAAETQRLE 490

Query: 480 SLVLTSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           ++ L   + ++T++  +Q G     + T  + L  P F   +L             V E 
Sbjct: 491 TVRLKVSDPAATAV-VEQTGAAIKGSITLADLLRRPGFRSDDLVRHGLADADLPLDVREG 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y+ Y  RQ  +  ++K +E + IP   DY+S+  LS E +EKL+ ++P NL QA
Sbjct: 550 AEIDIKYSGYLARQQQQIDQVKKQEHKAIPDGIDYASISTLSREAREKLAAVQPLNLGQA 609

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S++ G++PA +  L+++++
Sbjct: 610 SRVPGVSPADVTALMLWLE 628


>gi|183398093|gb|ACC62507.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Rhinolophus ferrumequinum]
          Length = 692

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 292/644 (45%), Positives = 409/644 (63%), Gaps = 32/644 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILTTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K   S +V+ D S +   +V+LT GTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRASGVVLADGSKVYADSVILTAGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    +Q  D   IPFSF+ + +  + 
Sbjct: 217 PSVGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNQQTPDNPSIPFSFLNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIK--SYGPRYCPSIEDKIVRFGERNGHQ 292
             Q+ C +T TN     I++EN+      +  IK  + GPRYCPSIE K++RF  R  HQ
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLENLH----LNSHIKETTRGPRYCPSIESKVLRFPNRL-HQ 331

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I PGY ++YDY +P+++ 
Sbjct: 332 VWLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMIHPGYGVQYDYFDPRQIA 391

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +         SRT+ YIGV+I
Sbjct: 392 PSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVRHKPPFVISRTEGYIGVLI 451

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEY 471
           DDLT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G K  GC+ ++R +R +      
Sbjct: 452 DDLTTMGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSL 511

Query: 472 NFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-R 526
               S+LKS+  +S    K +   SIS  +    R A + L Y +  ++ L    P+   
Sbjct: 512 EEGISVLKSIEFSSSKWKKLIPEASISMGKSLPLR-ALDVLKYEEVDMELLAKAVPEPLE 570

Query: 527 KFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKE 582
           K++    + ERL+IE++Y +    Q  E K ++ +E   +PKD DY +L   +LS E++E
Sbjct: 571 KYTKCRELAERLKIEAAYESVLFHQQQEIKSVQRDEALQLPKDLDYLTLKDVSLSCEVRE 630

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNEI 623
           KL   +P  +  AS+I G+TPAA+  LL ++K   +    LNE+
Sbjct: 631 KLHFCRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAALNEL 674


>gi|153939143|ref|YP_001392998.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. Langeland]
 gi|166222927|sp|A7GJN8|MNMG_CLOBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152935039|gb|ABS40537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. Langeland]
 gi|295320973|gb|ADG01351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. 230613]
          Length = 625

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 390/619 (63%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDAL
Sbjct: 8   FDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV 
Sbjct: 68  GGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVVLRQLEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  S
Sbjct: 128 EIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T T
Sbjct: 188 LLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETH+II +NI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ +
Sbjct: 248 SEETHKIIHQNIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+ 
Sbjct: 308 YVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T 
Sbjct: 428 MMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQITG 487

Query: 486 KN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV---IERL 536
           K       L   S   K   K  + YE +  P+    + F + P   K  SL     E +
Sbjct: 488 KREINEFLLEKGSTELK---KPISLYELIKRPEL---DYFKVEPLDDKRPSLSDDEKEEI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I + Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS
Sbjct: 542 NIIAKYEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 602 RISGVSPADISVLLIYMER 620


>gi|225386361|ref|ZP_03756125.1| hypothetical protein CLOSTASPAR_00105 [Clostridium asparagiforme
           DSM 15981]
 gi|225047543|gb|EEG57789.1| hypothetical protein CLOSTASPAR_00105 [Clostridium asparagiforme
           DSM 15981]
          Length = 632

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 380/621 (61%), Gaps = 9/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD++V+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLVRE
Sbjct: 4   LEETYDIVVVGAGHAGCEAALACARLGMETIMFTVSVDSIALMPCNPNVGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + E+L V Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQEYSRQMRRTLENTEHLTVRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E  +I  +     ++ R   VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVSELVVEDGVIKGVKTFSGAVYRAKAVVLCTGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L  S      +  R KTGTPAR+D ++I + + E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTESLRANGIEMFRFKTGTPARVDKRSIDFSRMEEQFGDQRVVPFSFSTDPESVQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETHRII EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHRIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKGRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+ GLEKV I+R  YAIEYD IN  +L  TLE KK
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQYAMYRTVAGLEKVKIVRNAYAIEYDCINSLQLKATLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+A K    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IGGLFSGGQFNGSSGYEEAAVQGFMAGVNAAMKIMGKEQIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR-FAKYIQEYNFLRSLL 478
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   +R  AK  Q    +R L 
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLRGIGHEIGLVSDEEYERMLAKRRQIEEEIRRLG 483

Query: 479 KSLV----LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           K  +    L    L   + +  + G T    E +  P+ +   L  + PD  +    V E
Sbjct: 484 KVNIGAGDLVQNFLEEHNSTLLKSGITLA--ELVKRPELNYGVLACLDPDRPELPEDVQE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ IE  Y  Y  RQM +  + K  E R +P+ F+Y  + +L  E  +KL+ ++P  + Q
Sbjct: 542 QVNIEIKYEGYIKRQMQQVAQFKKLEGRKLPEAFEYGQVKSLRREAVQKLNQVQPATVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++PA +++LL+++++
Sbjct: 602 ASRISGVSPADISVLLVHLEQ 622


>gi|317012057|gb|ADU82665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Lithuania75]
          Length = 621

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLIAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+I+ + S        +  V
Sbjct: 480 CVLTPSKEALKRLSELGENPINDKMDGVS-----LLARDSFNIEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|291541856|emb|CBL14966.1| glucose-inhibited division protein A [Ruminococcus bromii L2-63]
          Length = 624

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/618 (43%), Positives = 389/618 (62%), Gaps = 10/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAG EAA  AA+LG  TA+ T     +G+  CNP+IGG  KGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGIEAALAAARLGCKTAIFTINMDAVGNCPCNPSIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD   +Q R+LN  KGPAV   R Q DR  Y   M+ +I  Q NLD+ Q E+ 
Sbjct: 68  GGEMGKTADECFLQSRMLNRGKGPAVHSLRAQIDRRKYSSVMKHKIELQNNLDLRQAEIT 127

Query: 126 GFNTEK---NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                +   N+ + ++    ++ +C TV++ TGT+L G I +G++   +G  G  P+  L
Sbjct: 128 DIEKTEDGYNLTTRML----AVFKCKTVIIATGTYLGGRIFVGEVSYESGPDGIFPAAFL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S  K      R KTGTPAR+   +I + + E Q  DE   PFS+ T+ +   ++EC +
Sbjct: 184 GSSLKKLGLPLRRFKTGTPARVLKSSIDFSELEVQKGDEPPQPFSYETENLGENKVECHV 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           + TN ET +II+ENI  S +Y+G I+  GPRYCPS EDKI+RF ++  HQ+F+EP GL+T
Sbjct: 244 SWTNDETKQIILENINRSPLYAGKIEGVGPRYCPSFEDKIMRFKDKPRHQLFIEPCGLDT 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPEE+Q +F  TI GLE   I+RP YAIEYD ++P  + PTLE K   G
Sbjct: 304 EEMYLQGMSSSLPEEVQLKFYHTIKGLEHCLIMRPAYAIEYDCVDPLAMNPTLEFKDFEG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NG++GYEEAAAQGLVAGIN+A K    + + F R++SYIG ++DDL +KG  E
Sbjct: 364 LFGAGQFNGSSGYEEAAAQGLVAGINAAMKVLGREPVIFDRSESYIGTLVDDLVTKGANE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G ++G I + R  +F K  +      + LKS V
Sbjct: 424 PYRMMTSRSEYRLVLRQDNADERLTPLGHRIGLISDERYAKFLKKQELKKEELNRLKSTV 483

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           ++  + ++  +  ++  +  +     + +  P      L +I     +    + E+++IE
Sbjct: 484 ISPTDEANEILVSRETSEITSGVRLIDLMKRPQLGYDALKNIDKTRPELDPNIFEQVEIE 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ + +++K  E + +PKDFDY+ +  L  E +EKL+ +KP N+ QAS+I 
Sbjct: 544 IKYEGYIQKQLKQVEQMKKLEVKQLPKDFDYNEIEGLRLEAREKLNKIKPLNIGQASRIS 603

Query: 600 GMTPAALNLLLIYIKKNT 617
           G++PA +++LLI++ +N 
Sbjct: 604 GVSPADISVLLIWLAQNN 621


>gi|254526346|ref|ZP_05138398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537770|gb|EEE40223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
          Length = 655

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/629 (43%), Positives = 378/629 (60%), Gaps = 17/629 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----- 117
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL     
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 118 -----DVIQGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                D+ + E  G N++K +   I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEQVGLNSKKVVKKRIKGVKTFFGSYYTAKSVIITAGTFLEGKIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D K+II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKKSIIFDELDTQPSTAADKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTSKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSKCKMLRPAYAVEYEYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWSAYEEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I      K +   T  E L  P+F   +L       
Sbjct: 488 KLLEEEKLRLNNTRLKNTDEISKKIELDTGSKIKGSTTLKELLKRPNFHYLDLIKYNLAK 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGYSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +KP N   ASKI G++ A L  LL+++K
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLK 636


>gi|153815416|ref|ZP_01968084.1| hypothetical protein RUMTOR_01651 [Ruminococcus torques ATCC 27756]
 gi|145847275|gb|EDK24193.1| hypothetical protein RUMTOR_01651 [Ruminococcus torques ATCC 27756]
          Length = 636

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/622 (43%), Positives = 382/622 (61%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 15  YDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEVT 134

Query: 125 ---AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
              A    E  I  I  +     ++  C  V+L TGT+L+     G++    G  G   +
Sbjct: 135 DIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQSA 194

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   Q
Sbjct: 195 NYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQIDQ 254

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EP
Sbjct: 255 VSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEP 314

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE 
Sbjct: 315 EGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEF 374

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL +
Sbjct: 375 KNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVT 434

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT IG K+G I E   +R+ K +++   +   
Sbjct: 435 KESREPYRMMTSRAEYRLLLRQDNADQRLTKIGYKIGLISE---ERYEKLLEKERLIEEE 491

Query: 478 LKSL----VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  +    + TS+ + +   +++    T   T  E +  P+ S + L  I  + +     
Sbjct: 492 IHRVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPED 551

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P +
Sbjct: 552 VAQQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPAS 611

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           + QAS+I G++PA +++LL+Y+
Sbjct: 612 IGQASRISGVSPADVSVLLVYL 633


>gi|217967499|ref|YP_002353005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dictyoglomus turgidum DSM 6724]
 gi|217336598|gb|ACK42391.1| glucose inhibited division protein A [Dictyoglomus turgidum DSM
           6724]
          Length = 619

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/621 (43%), Positives = 369/621 (59%), Gaps = 19/621 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  A++LG    LIT    T+G + CNPA+GG GKGHL+ EIDAL
Sbjct: 4   YDVIVVGGGHAGCEAAYAASRLGVRVLLITMNYDTVGWLPCNPAMGGPGKGHLIMEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL GR+ + + IQ ++LN  KGPAVR  R Q D+ +Y   M+  + S +NL++ QGEV 
Sbjct: 64  GGLTGRITNRSMIQVKMLNTSKGPAVRALRAQVDKWIYPAKMREFLESIKNLEIYQGEVV 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +++          VV+T GTF+ GVIHI     PAGRM + PS  L ++
Sbjct: 124 DLIVEDNEVKGVILSTKKEFYAERVVITPGTFMNGVIHISTWSKPAGRMNEFPSVGLSDA 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   + GR  TGT  R+D +TI + KT  Q  DE L  FSF  +     Q+   +TRT
Sbjct: 184 LRRLGLEVGRFNTGTTPRVDKRTIDFSKTIIQPGDEELHSFSFWEEPEPREQVPSYLTRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +T  I++ NI  +A   G +   GPRYCPSIE+K + F +   HQ+FLEPEG N+  +
Sbjct: 244 TQKTKEIVLANIHLTASRIGGMVKKGPRYCPSIEEKYIWFPDHETHQVFLEPEGRNSVEI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GI T+LPEEIQ Q +R+IPGLE+V +IRPGYAI YD + P +L  TLETKKI GL+L
Sbjct: 304 YVQGIYTSLPEEIQIQILRSIPGLEEVELIRPGYAIAYDMVYPHQLKFTLETKKIKGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGLVAG N+A      + +   R + YIGV+IDDL +KGV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLVAGANAALSLIGKEPLIIRRDEGYIGVLIDDLVTKGVDEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYRI LR DNAD RLTP   KLG I E   K F + ++   + +  L+ + +  
Sbjct: 424 ILTSRAEYRILLRADNADQRLTPKAYKLGLISEDMWKMFQEKMERIKYEKKRLERVSVQP 483

Query: 486 KNLSSTSISFKQDGKTRTAYEF----------LSYPDFSIQNLFSICPDARKFSSLVIER 535
           + ++   +   + G +                ++Y D     L    P  +K+   V   
Sbjct: 484 EEINGILL---EKGTSPIVQPIPLVRIIKRPEITYDDLERIGLAGDLP--KKWRDTV--- 535

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            + +  Y  Y  +++ + KE +  E   IP D DY  +P LS E +EKL  ++P+   QA
Sbjct: 536 -ETDIKYEGYIKKELDKVKEFQEYESLEIPHDIDYGKIPHLSREGREKLEKVRPYTFGQA 594

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
            +I G+    L +LL Y+++ 
Sbjct: 595 MRITGVNAGDLTVLLYYLREK 615


>gi|108562639|ref|YP_626955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPAG1]
 gi|123373846|sp|Q1CUU1|MNMG_HELPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|107836412|gb|ABF84281.1| glucose inhibited division protein A [Helicobacter pylori HPAG1]
          Length = 621

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 YVLTPSKEVLKRLNELDENPINDKVDGIS-----LLARDSFNAEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|332244026|ref|XP_003271171.1| PREDICTED: LOW QUALITY PROTEIN: protein MTO1 homolog,
           mitochondrial-like [Nomascus leucogenys]
          Length = 717

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/655 (43%), Positives = 408/655 (62%), Gaps = 50/655 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S  V  D S +   +V+LTTGTF RG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGAVFMDGSTVYAESVILTTGTFXRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D+  IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHTPDDPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN +   I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPKVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP----------------- 337
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+P                 
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAIS 393

Query: 338 --------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
                   GY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN+
Sbjct: 394 SHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINA 453

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           + + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  
Sbjct: 454 SLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLR 513

Query: 450 GMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTA 504
           G K  GC+ ++R +R            S+LKS+  +S   KNL    SIS  +    R A
Sbjct: 514 GYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFSSSKWKNLIPEASISTSRSLPVR-A 572

Query: 505 YEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E KE++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKEVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 687


>gi|332971196|gb|EGK10159.1| glucose inhibited division protein A [Desmospora sp. 8437]
          Length = 628

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/615 (43%), Positives = 386/615 (62%), Gaps = 7/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  AA++G ST L+T    TI  M CNP+IGG  KGH+VRE+DAL
Sbjct: 8   FDVVVIGAGHAGCEAALAAARMGCSTLLLTLSLDTIAYMPCNPSIGGPAKGHVVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+  M++ + S+  L + Q  V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVYALRAQADKVLYQQEMKKTLESEPRLLLHQNMVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++ +  +     +VVLTTGT+LRG I IG L   +G     PS +L + 
Sbjct: 128 RLLVEDGVCRGVLTRTGAKYYAKSVVLTTGTYLRGKIIIGDLTYESGPNNQQPSINLAHH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   +T R KTGTP R++  T+  DK E Q  D+    FS+ T +    Q+ C +T T
Sbjct: 188 LHELGLETVRFKTGTPPRVNKLTVDTDKMEIQPGDDEPRAFSYETTEYNTDQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH  I +N+  + +YSG I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG  T  +
Sbjct: 248 NEKTHEFIRDNLHRAPMYSGVIEGQGPRYCPSIEDKIVRFADKSRHQIFLEPEGRETLEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPEEIQ   +RTI GLE V ++R GYAIEYD I P +L+P+LETK+++ LF 
Sbjct: 308 YVQGLSTSLPEEIQQPLLRTIDGLENVEMMRTGYAIEYDAIIPTQLWPSLETKRVANLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG++AGIN+ARK    + +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGIMAGINAARKVRGEEPVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RLT +G ++G I E R +RF K  +        L+  +L  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTDLGYEVGLIPEERYRRFRKKREAIEGEIQRLRETIL-- 485

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           K         ++ G +   +     + +  P+  I+++  + P     +  V E+++I+ 
Sbjct: 486 KPTPEVQALLRKVGSSELDHAVELSKLIKRPEVKIEHIHQLSPPEEPVTPEVAEQVEIQL 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + ++++  E + IP   DY  +  +S+E KEKL+ ++P +L QAS+I G
Sbjct: 546 KYEGYIKKSLQQVEKMRKMENKRIPDWVDYDQVKGISSEAKEKLNQVRPLSLGQASRISG 605

Query: 601 MTPAALNLLLIYIKK 615
           + P+ +++LLI++++
Sbjct: 606 VNPSDISILLIHLEQ 620


>gi|323487693|ref|ZP_08092951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Planococcus donghaensis MPA1U2]
 gi|323398427|gb|EGA91215.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Planococcus donghaensis MPA1U2]
          Length = 629

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/619 (44%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  +A++GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGAEAALASARMGAKTLVLTMNLDMIAFMPCNPSIGGPAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGRV D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  + NL + QG  
Sbjct: 68  LGGAMGRVIDKTHIQMRMLNTAKGPAVRALRAQADKVLYQQEMKRLMEEEPNLSLHQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  ++ Q   + R ++VV+TTGTFLRG I IG L+  +G     PS  L  
Sbjct: 128 EELIVEDGKIQGLITQVGGIYRANSVVITTGTFLRGEIIIGDLRYSSGPNNQQPSIKLAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K  F+T R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 188 NLEKLGFETVRFKTGTPPRVNSNSIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 248 TNEETHQVIDDNLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + + +IPGLEK  ++R GYAIEYD I P +L+PTLE+K+I  L+
Sbjct: 308 VYVQGLSTSLPEHVQRKLLESIPGLEKAEMMRAGYAIEYDAIVPTQLWPTLESKQIENLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A K    + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAAAKVLGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRS-LLK 479
           R+ TSRAEYR+ LR DNAD RLT +G  +G + E R  +F     +  +E   LRS ++K
Sbjct: 428 RLLTSRAEYRLLLRHDNADMRLTELGYAIGMVKEDRYVKFLSKKERIEEEIKRLRSVMIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + +     S  +DG  R A + L  P+ +   +  +          V E+++I 
Sbjct: 488 PNETTQQTIRDAGGSELKDG-IRGA-DLLKRPEMTYDMISQLTASPVDLEDEVKEQVEIH 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + +++  ++K  E + IP + DY ++  ++ E + KL+ ++P ++ QAS+I 
Sbjct: 546 IKYEGYIEKSLMQVDKLKKMENKKIPDNIDYHAISGIATEARGKLAEVRPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|126310383|ref|XP_001373515.1| PREDICTED: similar to MTO1 protein [Monodelphis domestica]
          Length = 689

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/636 (45%), Positives = 406/636 (63%), Gaps = 27/636 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EAAA AA+ G+ T L+TH+  +IG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 34  YDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDSIGQMSCNPSFGGIGKGHLMREVDAL 93

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  RV D +GI ++VLN +KGPAV G R Q DR+LY+  MQ EIL+   L V +  V 
Sbjct: 94  DGLCSRVCDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQKMQEEILTIPLLTVQESSVE 153

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +  K  +S +V++D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 154 DLLLMEPDLDHPGKCCVSGVVLEDGSRVYAESVILTTGTFLRGMILIGLESYPAGRLGDR 213

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSF+ + +  + 
Sbjct: 214 PSIGLAQTLEKLGFVVGRLKTGTPPRIARDSINFSILNKQMPDNPSVPFSFLNEAVWIKP 273

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN    +I+ ENI  +       K  GPRYCPSIE K++RF  R  HQ++
Sbjct: 274 EDQLPCYLTHTNSRVDQIVKENIHLNTHIKETTK--GPRYCPSIESKVLRFPNRI-HQVW 330

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG++++++YP G+S  LP  +Q Q I +I GLEK  I++PGY ++YDY++P+++ P+
Sbjct: 331 LEPEGMDSNLIYPQGLSMTLPPNVQEQLITSIRGLEKAKIVQPGYGVQYDYLDPRQITPS 390

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N       SRT+ YIGV+IDD
Sbjct: 391 LETLLVQRLFFAGQINGTTGYEEAAAQGIIAGINASLRVNGKPPFIVSRTEGYIGVLIDD 450

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R  R +        
Sbjct: 451 LTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKETGCVSQQRYNRASLMKSSLEE 510

Query: 474 LRSLLKSLVLT----SKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RK 527
             S+LKSL  +     K +    +S +K D   ++A + L Y +  +  L  + P+  +K
Sbjct: 511 GISVLKSLQFSGYKWKKLIPEAPVSIYKSD--PQSALDMLKYEEVDMTVLAKVLPEPLKK 568

Query: 528 FSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEK 583
           F+    ++ RL+IE++Y      Q  E +E++ +E   +P+D DY ++   +LSNE++EK
Sbjct: 569 FAECQELMNRLKIEATYELSLILQQQEIEEVQRDEALQLPEDLDYLTIRDVSLSNEVREK 628

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           L   +P  +  AS+I GMTPAA+  LL ++K    K
Sbjct: 629 LHSSRPQTIGAASRIPGMTPAAILNLLRFVKTTQQK 664


>gi|254778922|ref|YP_003057027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori B38]
 gi|254000833|emb|CAX28761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Helicobacter
           pylori B38]
          Length = 621

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+A            R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAALALKNQAPFILKRNEAYIGVLIDDLITKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL      LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYNLGLMEQDFYKELEKDKQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+I+ + S        +  V
Sbjct: 480 CVLTPSKEALKRLSELDENPINDKVDGVS-----LLARDSFNIEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|73973765|ref|XP_532202.2| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform IV [Canis familiaris]
          Length = 672

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/638 (45%), Positives = 415/638 (65%), Gaps = 29/638 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  NFDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKRNMQKEILNTPLLTVQEGAV 155

Query: 125 AGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                      +T K  +S +V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLADGSTVHAESVVLTTGTFLRGVIVIGLEMHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            PS  L  +  K  F  GRLKTGTP R+  +++ +    KQ  D   IPFSF+++ +  +
Sbjct: 216 QPSVGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNPSIPFSFVSETVWIK 275

Query: 237 ---QIECGITRTNLETHRIIMENIKHSAIYSGDIK--SYGPRYCPSIEDKIVRFGERNGH 291
              Q+ C +T TN     I++EN+      +  IK  + GPRYCPSIE K++RF  R  H
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLENLH----LNSHIKETTRGPRYCPSIESKVLRFPNRL-H 330

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           Q++LEPEG++++++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++
Sbjct: 331 QVWLEPEGMDSELIYPQGLSVTLPAELQEKMITCIKGLEKAKMIQPGYGVQYDYLDPRQI 390

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +         SRT+ YIGV+
Sbjct: 391 TPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVKHKPPFVVSRTEGYIGVL 450

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQE 470
           IDDLT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G K +GC+ ++R +R +     
Sbjct: 451 IDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEVGCVSQQRYERASWMKSS 510

Query: 471 YNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA- 525
                S+LKS+  +S    K +   SIS  +    R A + L Y +  ++ L    P+  
Sbjct: 511 LEEGISVLKSIEFSSSKWKKLIPEASISIVKSLPLR-ALDVLKYEEVDMKLLAKAVPEPL 569

Query: 526 RKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELK 581
           +K+  S  + ERL+IE++Y +    Q  + KE++ +E   +PKD DY +L   +LS E++
Sbjct: 570 KKYVESRELAERLKIEATYESVLFHQQQQIKEVQQDEALQLPKDLDYLTLRDVSLSYEVR 629

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           EKL  ++P  +  AS+I G+TPAA+  LL ++K    K
Sbjct: 630 EKLHFIRPETIGAASRIPGVTPAAIINLLRFVKTTQQK 667


>gi|157820343|ref|NP_001100311.1| protein MTO1 homolog, mitochondrial [Rattus norvegicus]
 gi|149019088|gb|EDL77729.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           (predicted) [Rattus norvegicus]
          Length = 679

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/631 (45%), Positives = 409/631 (64%), Gaps = 27/631 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 36  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 95

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
           DGL  RV D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 96  DGLCSRVCDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAVE 155

Query: 125 --------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                    G+   K+ +  +V+ D S +   +VVLTTGTFLRG + IG    PAGR+GD
Sbjct: 156 DLVLAEPEPGYGG-KSRVRGVVLADGSTMHAESVVLTTGTFLRGALIIGLEVHPAGRLGD 214

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            PS  L  +  K  F  GRLKTGTP RL  ++I +    +  AD   IPFSF++D +  +
Sbjct: 215 QPSIGLAQTLEKLGFMVGRLKTGTPPRLAKESINFSILHEHTADNPPIPFSFLSDDVWIK 274

Query: 237 ---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     +++EN+  ++      +  GPRYCPSIE K++RF  R  HQ+
Sbjct: 275 PEDQLPCYLTHTNPRVDELVLENLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQV 331

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P
Sbjct: 332 WLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISP 391

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 392 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 451

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT    +  GC+  +R KR         
Sbjct: 452 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADTRLTFRAHEDAGCVSPQRYKRALWMKSSLE 511

Query: 473 FLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RK 527
              S+LKS+  +S    K +    IS  +     +A + L Y +  +++L S+ P+  +K
Sbjct: 512 EGISVLKSIKFSSSKWKKLIPQAPISINRSLPV-SALDVLKYEEVDMESLASVVPEPLKK 570

Query: 528 FSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEK 583
           +++   +  RL+IE++Y +    Q+ E KE++ +E   +P+D DY ++   +LS E++EK
Sbjct: 571 YTACRELARRLKIEATYESVLLYQLQEIKEVQQDEALQLPQDLDYLTIKDVSLSQEVREK 630

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L + +P  +  AS+I G+TPAA+  LL +++
Sbjct: 631 LHLSRPQTIGAASRIPGVTPAAIINLLRFVR 661


>gi|322386458|ref|ZP_08060087.1| glucose inhibited division protein A [Streptococcus cristatus ATCC
           51100]
 gi|321269544|gb|EFX52475.1| glucose inhibited division protein A [Streptococcus cristatus ATCC
           51100]
          Length = 660

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDVIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKIEALGFKALTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|257437745|ref|ZP_05613500.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium prausnitzii A2-165]
 gi|257199760|gb|EEU98044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium prausnitzii A2-165]
          Length = 624

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/615 (44%), Positives = 371/615 (60%), Gaps = 10/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DAL
Sbjct: 7   YDVIVIGAGHAGIEAAHAAATLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q EV 
Sbjct: 67  GGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L  S
Sbjct: 127 GIEVENGHVKGVVTQLNGEYSAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGIT 243
                    R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I 
Sbjct: 187 LKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPMHNKVECWIA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT+
Sbjct: 247 YTNPETHRIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + GL
Sbjct: 307 EMYLQGASSSLPEDVQNAFYRSIQGFEHIEIMRPAYAIEYDCVDPTSLEATLESKVVRGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AG+N+AR +     +   R  SY+G ++DDL +KGV++P
Sbjct: 367 YGAGQFNGTSGYEEAAAQGLLAGLNAARSAKGESQLILERQTSYLGTLVDDLVTKGVMDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR++LR DNAD RLTPIG + G +   +  R+AKY    + L +  + L  
Sbjct: 427 YRMMTSRSEYRLTLRQDNADQRLTPIGREYGLV---QDDRWAKYQHTQSILEAERRRLHE 483

Query: 484 TSKNLSSTSISFKQDGKTRT-----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T    +    + +  G T       A E L  P+ S   L  +       + ++ ERL+ 
Sbjct: 484 THLRTADLRAAMEAAGLTPAAEGGIAEELLRRPEISYPLLAGVIGWGEGITPMLAERLET 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ    +++   EK LIP DF+Y+ L  L+ E +EKL+ ++P NL QA +I
Sbjct: 544 EIKYAGYIARQDRMIRDVARHEKTLIPADFEYADLTGLTLEAREKLTRIRPKNLGQAGRI 603

Query: 599 EGMTPAALNLLLIYI 613
            G++P+ +  L I +
Sbjct: 604 PGVSPSDVAQLSIAL 618


>gi|260881794|ref|ZP_05405237.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mitsuokella multacida DSM 20544]
 gi|260847903|gb|EEX67910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mitsuokella multacida DSM 20544]
          Length = 636

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/633 (42%), Positives = 394/633 (62%), Gaps = 20/633 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EAA  AA++G  T L T     I  M CNP++GG GKGHLVRE+DA
Sbjct: 7   SYDVIVIGAGHAGVEAALAAARIGCRTLLATLSMDNIALMPCNPSVGGPGKGHLVRELDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQFR+LN  KGPAV   R QAD++LY+  M+      ENLDV Q  +
Sbjct: 67  LGGEMGVNADKTCIQFRMLNTGKGPAVHALRAQADKKLYQFTMKETCEKTENLDVKQILI 126

Query: 125 AGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  +K  +  ++++   +     +++ TGT+LRG I +G+     G  G  P+   
Sbjct: 127 TDLLLTEDKKAVRGVLVETGEVYLAPAIIMATGTYLRGRIIVGEHTYSGGPNGQRPAMKF 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S         R KTGTPAR+D +T+ ++K + Q  DE    FSFM+D+ T  Q+ C +
Sbjct: 187 SDSLKAAGIRLMRFKTGTPARVDARTLDYEKMQIQPGDEEARNFSFMSDERTREQVPCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+I+ +N+  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEGL+T
Sbjct: 247 TYTNEATHKILRDNMDRAPMANGIIEGIGPRYCPSIETKILRFPDKDRHQLFLEPEGLHT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST++P ++Q  F++TIPGLE  +++R GYAIEYD I+P +L PTLE K I G
Sbjct: 307 NEVYVQGMSTSMPMDVQLAFLKTIPGLEHAHVMRAGYAIEYDCIDPTQLKPTLEFKDIKG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            F AGQ NGT+GYEEAAAQG++AGIN+A    K + +   R+++YIGV+IDDL +KG  E
Sbjct: 367 FFSAGQANGTSGYEEAAAQGIIAGINAAMFIQKREPLILKRSEAYIGVLIDDLVTKGTNE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R  RF K  ++      LLK   
Sbjct: 427 PYRIMTSRAEYRLLLRQDNADLRLTPYGRRVGLVKDDRWARFLKKKEDIEAAMKLLKE-- 484

Query: 483 LTSKNLSS-TSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            T+ N S  T+   ++ G       +   + L       + L    P+  + +  V  R 
Sbjct: 485 -TNINPSQETNARLQEAGIEPIKSAQPLADLLRRQQVDYEKLRLAYPELPELAKEV--RQ 541

Query: 537 QIESS--YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           Q+E+S  Y  Y  +Q+ +   ++  E +L+P+D DY  +P+L +E +EKL+ ++P ++ Q
Sbjct: 542 QVETSILYEGYIKKQLEQVAHMEKLEAKLLPEDIDYQDVPSLRDEAREKLAAIRPRSVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK-----NTVKLNE 622
           A +I G++PA +++LL+++++     +T K NE
Sbjct: 602 AGRISGVSPADVSVLLVWLEQQKRLHDTAKQNE 634


>gi|115497106|ref|NP_001069537.1| protein MTO1 homolog, mitochondrial [Bos taurus]
 gi|94574214|gb|AAI16078.1| Mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Bos taurus]
 gi|296484283|gb|DAA26398.1| mitochondrial translation optimization 1 homolog [Bos taurus]
          Length = 692

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/630 (46%), Positives = 408/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +VVLTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKYRVSGVVLADGSKVYAESVVLTTGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           P+  L  +  K  F  GRLKTGTP R+  +++ +    KQ  D   IPFSF+   +  + 
Sbjct: 217 PAVGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNPSIPFSFINQTVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++EN+ H   +  +  + GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLENL-HLNCHVKET-TRGPRYCPSIESKVLRFPNRV-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLE   +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLENAKMIQPGYGVQYDYMDPRQISPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +         SRT+ YIGV+IDD
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVRHKPPFVISRTEGYIGVLIDD 453

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G K  GC+ ++R +R +        
Sbjct: 454 LTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSLEE 513

Query: 474 LRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+   S   KNL   +SIS  +    R A + L Y +  ++ L    P+  +K+
Sbjct: 514 GISMLKSIEFLSTKWKNLIPESSISSGKSLPLR-ALDVLKYEEVDMELLARAVPEPLKKY 572

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q  E KE++ +E   +PKD DY +L   +LS E++EKL
Sbjct: 573 TQCRELAERLKIEATYESVLFHQQQEIKEVQRDEALQLPKDLDYLTLKDISLSYEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              +P  +  AS+I G+T AA+  LL ++K
Sbjct: 633 HFSRPQTIGAASRIPGVTAAAIVNLLRFVK 662


>gi|329117673|ref|ZP_08246390.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parauberis NCFD 2020]
 gi|326908078|gb|EGE54992.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parauberis NCFD 2020]
          Length = 632

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/617 (43%), Positives = 378/617 (61%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  A+++G +T L T     +  M CNP+IGG  KG +VREIDAL
Sbjct: 9   YDVIVIGAGHAGVEAALAASRMGCNTLLATISLDMLAFMPCNPSIGGSAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  + 
Sbjct: 69  GGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKNLYSREMKHTVEKQENLTLRQAIID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++          +VV+TTGT LRG I +G+LK  +G      S +L ++
Sbjct: 129 DILVEDGQVVGVLTATKQKFSAKSVVVTTGTALRGEIILGELKYSSGPNNSLASVTLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K   + GR KTGTP R+   +I +D+TE Q  D+    FSF++  +     QI C +T
Sbjct: 189 LKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDQAPNHFSFLSKDEDYLQDQIPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T+
Sbjct: 249 YTNSTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETK ISGL
Sbjct: 309 EVYVQGLSTSLPEDVQKDLIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKLISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LEP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F  K  Q  N L+ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDIRWDNFQIKKNQFENELKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N    ++ FK      TA EF+  P+ S Q   S + P A   +  +I+ L+ E
Sbjct: 489 KPIKETNEKVQALGFKPLTDAMTAKEFMRRPEISYQTAVSFVGPAAENLNPKIIDMLETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QAS+I 
Sbjct: 549 IKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIKKN 616
           G+ PA +++L++YI+ N
Sbjct: 609 GVNPADISILMVYIEGN 625


>gi|323703264|ref|ZP_08114915.1| glucose inhibited division protein A [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531729|gb|EGB21617.1| glucose inhibited division protein A [Desulfotomaculum nigrificans
           DSM 574]
          Length = 629

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/625 (42%), Positives = 391/625 (62%), Gaps = 19/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEA   AA++G  T ++T     +  M CNPA+GG  K HLV+EIDAL
Sbjct: 8   YDVIVVGAGHAGCEAGLAAARMGCKTLVLTLNLDNVALMPCNPAVGGPAKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y+  M++ + SQ NLD+ Q  V 
Sbjct: 68  GGQMGINTDLTAIQMRMLNTGKGPAVHALRAQADKLRYQQLMKKTLESQPNLDLKQLLVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  +     +      V+LTTGT+L+G I IG +  P G      + +L  +
Sbjct: 128 EILVQNGQVRGVATNIGAEFSARAVILTTGTYLKGRIIIGSVYYPGGPNSQHAAMNLSEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GR KTGTPAR+D +T+ + K   Q  DER+  FSF+       Q+ C +T T
Sbjct: 188 LRSLGLELGRFKTGTPARIDRRTVDFSKMTIQPGDERVHNFSFLNPVKHRDQVPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL+T  +
Sbjct: 248 TERTHQIIRDNLHRSPLYSGIIEGVGPRYCPSIEDKIVRFADKPKHQIFIEPEGLSTFEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LP ++Q + +R+IPGLE+V I+RPGYAIEYDY+ P +L  TLE K I GL+ 
Sbjct: 308 YVQGMSTSLPPDVQLEMLRSIPGLEQVEIMRPGYAIEYDYVVPTQLKSTLECKNIDGLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG++AGIN+A K  + +    SR ++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGIMAGINAALKIKEKEPFTLSRAEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS---LLKSLV 482
           + T+RAEYR+ LR DNAD+RLT  G  +G + E   +R+ KY+++++ +++    L+S V
Sbjct: 428 LMTARAEYRLLLRQDNADHRLTQKGYDIGLVTE---ERYRKYVEKWSAIKNEIDRLQSQV 484

Query: 483 LTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           + +        K+L S+ I+     +   A   +  P+  +++L  +  D  + +  V+E
Sbjct: 485 IPASEEVNNLLKDLGSSEIN-----QPVPAVNLIRRPEIHLRDLIKLNIDMPQLNDEVLE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++IE  Y  Y  +Q+ + +  +  E R + KD DY ++  LS E ++KL   KP ++ Q
Sbjct: 540 EVEIEIKYEGYIKKQLAQVERFEKLESRKLSKDIDYLNIKGLSVEARQKLDKFKPDSIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G++PA +++LL+++++   K
Sbjct: 600 ASRISGVSPADISVLLVWLEQERRK 624


>gi|115442371|ref|NP_001045465.1| Os01g0960300 [Oryza sativa Japonica Group]
 gi|57900292|dbj|BAD87125.1| putative glucose inhibited division protein A [Oryza sativa
           Japonica Group]
 gi|113534996|dbj|BAF07379.1| Os01g0960300 [Oryza sativa Japonica Group]
 gi|222619912|gb|EEE56044.1| hypothetical protein OsJ_04841 [Oryza sativa Japonica Group]
          Length = 717

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 380/622 (61%), Gaps = 10/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---D 118
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL   +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 119 VIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  EV  G N     + +    D       +VVLTTGTF+ G I +G+  +PAGR G+S
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMD---FYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 240

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNR 236
            S+ L  +  +  F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  I   
Sbjct: 241 ASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERD 300

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLE
Sbjct: 301 QMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLE 360

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L 
Sbjct: 361 PEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLM 420

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TKK  GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL 
Sbjct: 421 TKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLV 480

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I +RR + +          + 
Sbjct: 481 TKDLREPYRMLTSRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKE 540

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            LKS  +     ++  TS+S +   ++ T    L  P    + L          S +  E
Sbjct: 541 RLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKE 600

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I+  Y  +  RQ  + ++I  +E + +P+D DY S+  LS E +EKLS ++P  + Q
Sbjct: 601 CVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQ 660

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G++PA + +LLI+++ N
Sbjct: 661 ASRIGGVSPADMTVLLIWMESN 682


>gi|160882058|ref|YP_001561026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium phytofermentans ISDg]
 gi|189039336|sp|A9KLX8|MNMG_CLOPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160430724|gb|ABX44287.1| glucose inhibited division protein A [Clostridium phytofermentans
           ISDg]
          Length = 627

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 382/618 (61%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEAA   A+LG +T ++T     I  M CNP IGG  KGHLVREIDA
Sbjct: 7   AYDVVVVGAGHAGCEAALACARLGFNTIMLTVSMDNIALMPCNPNIGGTSKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M++ + + +NL + Q EV
Sbjct: 67  LGGEMGKNIDKTYIQSKMLNQSKGPAVHSLRAQADKMDYCREMRKVVENTDNLTLRQDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE N ++ + +    +  C  V+L TG +L      G+     G  G   +N L  
Sbjct: 127 IDILTENNEVTGVKVYSGGVYPCKVVILCTGVYLNARCIYGETSHYTGPNGLPSANHLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           S  K   +  R KTGTPAR+D ++I + K E+QF DE+++PFSF+   + I   QI C +
Sbjct: 187 SLKKLGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDEKVVPFSFINNPEDIEKEQISCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +NI  S +YSG+IK  GPRYCPSIEDK+V+F +++ HQ+F+EPEG  T
Sbjct: 247 TYTNENTHDIIRDNIHRSPLYSGNIKGTGPRYCPSIEDKVVKFPDKDRHQVFIEPEGNYT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y +G+S++LPE++Q +  R++ GLE   I+R  YAIEYD INP +L  +LE   I+G
Sbjct: 307 NEMYISGMSSSLPEDVQFKMYRSVSGLENAKIVRNAYAIEYDCINPMQLKSSLEFMSING 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF  GQ NG++GYEEAAAQGL+AGIN+ARK +  + I   R+ +YIGV+IDDL +K   E
Sbjct: 367 LFSGGQFNGSSGYEEAAAQGLMAGINAARKLSGKEPIVLDRSQAYIGVLIDDLVTKETHE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQEYNFLRSLLK 479
           PYRM TSRAEYR+ LR DNAD RLT IG ++G I E R +      + I+E   +  L  
Sbjct: 427 PYRMMTSRAEYRLILRQDNADQRLTRIGHEIGLISEDRYEHLIDKERMIKEE--MMRLEN 484

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           SL+  SK +      +         T  E +  P+ +   L  +  +       VI +++
Sbjct: 485 SLIGASKEVQEILEGLGTTTLKTGTTLAELVRRPELTYAALAPLDKNREPLPEEVITQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  + ++ K  E + IP+D DYS +P+L  E K+KL+ +KP ++ QAS+
Sbjct: 545 INFKYDGYIKRQEHQVEQFKKLEGKKIPEDLDYSDVPSLRIEAKQKLNQIKPSSVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LL+Y+++
Sbjct: 605 ISGVSPADISVLLVYLEQ 622


>gi|317013657|gb|ADU81093.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Gambia94/24]
          Length = 621

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 374/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + I  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEIVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNAEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|282881765|ref|ZP_06290423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus lacrimalis 315-B]
 gi|281298375|gb|EFA90813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus lacrimalis 315-B]
          Length = 641

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/621 (43%), Positives = 381/621 (61%), Gaps = 16/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IVIG GHAG EA   AA++G  T ++    + + +M+CNP +GG GKGHLVREIDA
Sbjct: 18  DYDCIVIGAGHAGSEAGLAAARMGCKTLILCINLNAVANMACNPNVGGTGKGHLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M+R + +QENLD+ + E 
Sbjct: 78  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHETMKRVLENQENLDLKEDEA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ ++ +  +  TVVL +GT+LRG +++G++   +G  G  P+N L  
Sbjct: 138 VRILKEDNKVCGVLTRNGARYKAKTVVLCSGTYLRGRVYMGEVNYSSGPTGFGPANELSK 197

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CG 241
           S  + F     RLKTGTPAR+   +I +   E+Q  DE+++PFSF   DK  N   E C 
Sbjct: 198 SLEEDFSMKLMRLKTGTPARVLRSSIDFSCMEEQRGDEKIVPFSFKNYDKDMNIDQELCH 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  + H+II +NI  SA+  GDI   GPRYCPSIEDK+ RF ++N HQ+F+EPEGL 
Sbjct: 258 LTYTTEKCHQIIRDNINRSALSLGDITGKGPRYCPSIEDKVTRFKDKNSHQVFIEPEGLT 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP E+Q++F + I GL+   I+RP YAIEYD I+   L   LE     
Sbjct: 318 TDEMYIQGVSSSLPVEVQNEFYKEIIGLKNCKILRPAYAIEYDAIDATLLKRNLEHMDYE 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEAA+QGLVAGIN+A K    +     R+  YIGV+IDDL +KG  
Sbjct: 378 GLFFAGQINGSSGYEEAASQGLVAGINAALKVQGKEPFIIDRSQGYIGVLIDDLVTKGTK 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL 477
           EPYRM T+RAEYR++LR DNAD RLT IG  LG + E R K+F        +E   +RS+
Sbjct: 438 EPYRMMTARAEYRLTLRQDNADLRLTQIGYDLGLVDEDRYKKFLYRKENIEKELERVRSI 497

Query: 478 LKSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             +    + N    L+ST +       + T  E L  P+ + + L  +  D  K    +I
Sbjct: 498 RINPTEENNNIIRKLNSTELK-----NSLTLAELLRRPELNYEKLADLDKDRPKLRKDII 552

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           + ++IE  Y  Y  +Q I+ ++ K  E R++ KD DY  +  L  E +EKLS ++P ++ 
Sbjct: 553 DNVEIEIKYEGYIKKQEIQIRQYKKLENRVLSKDLDYKKIDGLRLEAREKLSDIRPESIG 612

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QA +I G++PA +N+LLIY++
Sbjct: 613 QAGRITGVSPADINVLLIYLE 633


>gi|134096565|ref|YP_001101640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Herminiimonas arsenicoxydans]
          Length = 601

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/589 (46%), Positives = 368/589 (62%), Gaps = 14/589 (2%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGG+GKGHLVRE+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPSIGGIGKGHLVREVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           + A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IH
Sbjct: 61  KQAIRSRLENQPNLWLFQQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG     AGR GD P+ SL     +     GRLKTGTP R+DG++I +    +Q  D   
Sbjct: 121 IGMNNYSAGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDP 180

Query: 224 IP-FSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           IP FS M    +  +Q+ C IT TN +TH +I   +  S +Y+G I+  GPRYCPSIEDK
Sbjct: 181 IPVFSVMGSVAMHPQQMPCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQIFLEPEGL T+  YPNGIST+LP ++Q   ++++ GLE  +I+RPGYAI
Sbjct: 241 IHRFAGKESHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDY +P+ L  TLETK I GLF AGQINGTTGYEEAAAQG++AGIN+A +  + D    
Sbjct: 301 EYDYFDPRGLKATLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTP 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++Y+GV++DDL ++GVLEPYRMFTSRAEYR+SLR DNAD RLT +G +LGC+G+ + 
Sbjct: 361 RRDEAYLGVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQW 420

Query: 462 KRF----AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN 517
             F        +E   LRS   S  + ++   +  +  K   +     + L  P+ + + 
Sbjct: 421 ALFETKREAVARELERLRSTWVSPRILAEA-EAERVLGKGIEREYALADLLRRPNVTYET 479

Query: 518 LFSI-CPDARKFSS------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           L S+   D +           V E+++I+  YA Y  RQ  E +     E   +P +FDY
Sbjct: 480 LMSLKGMDGQDLGGPGVAEPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDY 539

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ++  LS E+++KL+  +P  L QAS+I G+TPAA++L+L+++KK   K
Sbjct: 540 MAVKGLSIEVRQKLTKQRPETLGQASRISGVTPAAISLMLVHLKKGGFK 588


>gi|116074137|ref|ZP_01471399.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
 gi|116069442|gb|EAU75194.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
          Length = 659

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/629 (43%), Positives = 375/629 (59%), Gaps = 20/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREAMVT 130

Query: 126 GFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           G   + +                 I+ +     S+     VVLT GTFL G I +G   +
Sbjct: 131 GLEIDGDPSGGGEQWDPSQGPAARITGVRTYFGSVYGAKAVVLTAGTFLGGRIWVGHQSM 190

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF- 228
            AGR G+  +  L  +  +  F T RLKTGTPAR+D ++I  D  E+Q +D     FSF 
Sbjct: 191 AAGRAGEQAAEGLTEALQQLGFQTDRLKTGTPARVDRRSIALDLLEEQPSDAADRFFSFD 250

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                +  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++
Sbjct: 251 PAAWASGEQMSCHITRTTAATHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADK 310

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLEK  ++RP Y+++YDY+  
Sbjct: 311 DSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEKAVMLRPAYSVDYDYLPA 370

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L P+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    D + F R  SYI
Sbjct: 371 TQLLPSLETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQDAVHFPRQGSYI 430

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F + +
Sbjct: 431 GTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQLFEEKL 490

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
                 +  L++  L   +  + ++  +     +   T  + L  P     +L       
Sbjct: 491 SAMEAEKKRLETQRLKVSDPVAPAVEAETGAPIKGSITLADLLRRPGMHAADLVRHGLAD 550

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 V E  +I+  Y+ Y  RQ  +  ++K + +R +P+  DYS +  LS E +EKLS
Sbjct: 551 ADLPLQVREGAEIDIKYSGYLQRQQQQIDQVKRQGQRKLPETIDYSGIGTLSREAREKLS 610

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++P  L QAS+I G++ A L  LL++++
Sbjct: 611 AVRPLTLGQASQIPGVSQADLTALLMWLE 639


>gi|134301152|ref|YP_001114648.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Desulfotomaculum reducens MI-1]
 gi|172044353|sp|A4J9S0|MNMG_DESRM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134053852|gb|ABO51823.1| glucose inhibited division protein A [Desulfotomaculum reducens
           MI-1]
          Length = 630

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/623 (43%), Positives = 381/623 (61%), Gaps = 13/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI++G GHAGCEA   AA++G  T ++T     I  M CNPA+GG  K HLV+EIDAL
Sbjct: 8   YDVIIVGAGHAGCEAGLAAARMGCKTLVLTLNLDNIALMPCNPAVGGPAKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D A IQ R+LN  KGPAV   R QAD+  Y+  M++ + +QENLDV Q  V 
Sbjct: 68  GGQMGLTTDLAAIQMRMLNTGKGPAVYALRAQADKVKYQQLMKKNLETQENLDVKQLLVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   ++ +  Q  +      VV+TTGT+L+G I IG +  P G     PS +L  +
Sbjct: 128 EILVKNGRVTGVATQIGAEFSARAVVVTTGTYLKGRIIIGNVHFPGGPNSQFPSVNLSEN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GR KTGTPAR+D +TI + K   Q  DE +  FS+++      Q+ C +T T
Sbjct: 188 LRSLGLELGRFKTGTPARVDRRTIDFTKMTIQPGDEEVHNFSYISPVTQREQVPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II EN+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL+T  +
Sbjct: 248 TEKTHEIIRENLHRSPLYSGIIEGVGPRYCPSIEDKIVRFADKPQHQIFVEPEGLHTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LP ++Q +  RTIPG+E V+I+RP YAIEYDYI P +L  TLETK+I GL+ 
Sbjct: 308 YVQGMSTSLPPDVQLKMYRTIPGMENVSIMRPAYAIEYDYIVPTQLRTTLETKEIIGLYA 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG++AGIN+A +  + D    SR+++YIGV+IDDL  KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGIMAGINAALQVQEKDPFYLSRSEAYIGVLIDDLVVKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + T+RAEYR+ LR DNAD+RLT  G  +G + + R   +    Q  +     LK++V+ +
Sbjct: 428 LMTARAEYRLLLRQDNADHRLTQKGYNIGLVSQVRYDHYMNKWQSISKEMERLKTIVIPA 487

Query: 486 --------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                   K+L S+ I+     +       L  P+     L  +          VIE ++
Sbjct: 488 NEETNKVLKSLESSEIT-----QNTPFINLLRRPEIKYNTLAGLSDHFLDLPQEVIEEVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y  Y  +Q+ + +  +  E R++  D DY  +  LS E ++KL   KP ++ QAS+
Sbjct: 543 IEVKYEGYIKKQLAQVERFEKLEGRILNIDIDYEMIKGLSLEARQKLKKFKPTSIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVKL 620
           I G++PA +++LLI++++   K+
Sbjct: 603 ISGVSPADISVLLIWLEQERRKI 625


>gi|218189778|gb|EEC72205.1| hypothetical protein OsI_05293 [Oryza sativa Indica Group]
          Length = 717

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 380/622 (61%), Gaps = 10/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---D 118
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL   +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 119 VIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  EV  G N     + +    D       +VVLTTGTF+ G I +G+  +PAGR G+S
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMD---FYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 240

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNR 236
            S+ L  +  +  F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  I   
Sbjct: 241 ASHGLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERD 300

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLE
Sbjct: 301 QMCCYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLE 360

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L 
Sbjct: 361 PEGRDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLM 420

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TKK  GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL 
Sbjct: 421 TKKFEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLV 480

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I +RR + +          + 
Sbjct: 481 TKDLREPYRMLTSRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKE 540

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            LKS  +     ++  TS+S +   ++ T    L  P    + L          S +  E
Sbjct: 541 RLKSTKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKE 600

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I+  Y  +  RQ  + ++I  +E + +P+D DY S+  LS E +EKLS ++P  + Q
Sbjct: 601 CVEIDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQ 660

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G++PA + +LLI+++ N
Sbjct: 661 ASRIGGVSPADMTVLLIWMESN 682


>gi|317180018|dbj|BAJ57804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F32]
          Length = 621

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YI V+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIAVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        S  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLSERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|126697203|ref|YP_001092089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9301]
 gi|205375706|sp|A3PFG3|MNMG_PROM0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126544246|gb|ABO18488.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9301]
          Length = 660

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/634 (43%), Positives = 378/634 (59%), Gaps = 17/634 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----- 117
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL     
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 118 -----DVIQGEVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                D+ + E  G N+++ +   I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLNSKRTVKKRIKGVRTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D  + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTENLHEIGIKTERLKTGTPARVDKRSIIFDDLDIQPSTAADKYFSFD 247

Query: 230 TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D   N  Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLNECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK +K D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLSKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLT +G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTQLGYQIGLINEKRWSAYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L    L +    S  I  +   K +   T  E L  PDF   +L       
Sbjct: 488 KLLEEEKFRLNKTRLKNTEEISKKIELETGSKIKGSITLKELLKRPDFHYSDLIKYNLTE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            +KP N   ASKI G++ A L  LL+++K   +K
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIK 641


>gi|294783016|ref|ZP_06748340.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479894|gb|EFG27671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
          Length = 633

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/630 (43%), Positives = 379/630 (60%), Gaps = 21/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEEDGKKIIKGIKIREGLEYRAKIVIMATGTFLRGLIHIGEINFKAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D  +++ FS  T   + ++ 
Sbjct: 182 EELPLSLEKIGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDTSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++  H +FL
Sbjct: 242 RQIPCYIAHTNEKVHEIIKNARERSPMFNGRIQGLGPRYCPSIEDKVFRYPDKIQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + IR + G E   ++R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIRNVKGFENAKVMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ +G +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKLGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP-----D 524
            +L    +   NL       K      +DG   T  E L  P+ + +++  I       D
Sbjct: 482 EILTKTNVGPSNLRVNETLLKRGENPIKDGS--TLLELLRRPEVTFEDIVYISEEIKGVD 539

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL
Sbjct: 540 LKGYDHDTSYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKL 599

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 600 KRIKPINIGQASRISGVSPADIQAILIYLK 629


>gi|119196609|ref|XP_001248908.1| hypothetical protein CIMG_02679 [Coccidioides immitis RS]
          Length = 694

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/633 (44%), Positives = 384/633 (60%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTEKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     +  + S          + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLGSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQLTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKSTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-------SIC 522
           +   L++LL++    S   S        D   R+A+E L   +  I  +         I 
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
             +  F   +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E + 
Sbjct: 573 YTSGSFDPKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERH 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A +IEG+TP     LL++I+K
Sbjct: 633 ALERVRPESVGMARRIEGVTPTGALRLLMHIRK 665


>gi|300814734|ref|ZP_07094982.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511121|gb|EFK38373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 641

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/621 (43%), Positives = 382/621 (61%), Gaps = 16/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IVIG GHAG EA   AA++G  T ++    + + +M+CNP +GG GKGHLVREIDA
Sbjct: 18  DYDCIVIGAGHAGSEAGLAAARMGCKTLILCINLNAVANMACNPNVGGTGKGHLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M+R + +QENLD+ + E 
Sbjct: 78  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHETMKRVLENQENLDLKEDEA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ ++ +  +  TVVL +GT+LRG +++G++   +G  G  P+N L  
Sbjct: 138 VRILKEDNKVCGVLTRNGARYKAKTVVLCSGTYLRGRVYMGEVNYSSGPTGFGPANELSK 197

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CG 241
           S  + F     RLKTGTPAR+   +I +   E+Q  DE+++PFSF   DK  N   E C 
Sbjct: 198 SLEEDFSMKLMRLKTGTPARVLRSSIDFSCMEEQRGDEKIVPFSFKNYDKDMNIDQELCH 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  + H+II +NI  SA+  GDI   GPRYCPSIEDK+ RF ++N HQ+F+EPEGL 
Sbjct: 258 LTYTTEKCHQIIRDNINRSALSLGDITGKGPRYCPSIEDKVTRFKDKNSHQVFIEPEGLT 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP E+Q++F + I GL+   I+RP YAIEYD I+   L   LE     
Sbjct: 318 TDEMYIQGVSSSLPVEVQNEFYKEIIGLKNCKILRPAYAIEYDAIDATLLKRNLEHMDYE 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEAA+QGLVAGIN+A K    +     R+  YIGV+IDDL +KG  
Sbjct: 378 GLFFAGQINGSSGYEEAASQGLVAGINAALKVQGKEPFIIDRSQGYIGVLIDDLVTKGTK 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL 477
           EPYRM T+RAEYR++LR DNAD RLT IG  LG + E R K++        +E + +RS+
Sbjct: 438 EPYRMMTARAEYRLTLRQDNADLRLTQIGYDLGLVDEDRYKKYLYRKENIEKELDRVRSI 497

Query: 478 LKSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             +    + N    L+ST +       + T  E L  P+ + + L  +  D  K    +I
Sbjct: 498 RINPTEENNNIIRKLNSTELK-----NSLTLTELLRRPELNYEKLADLDKDRPKLRKDII 552

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           + ++IE  Y  Y  +Q I+ ++ K  E R++ KD DY  +  L  E +EKLS ++P ++ 
Sbjct: 553 DNVEIEIKYEGYIKKQEIQIRQYKKLENRVLSKDLDYKKIDGLRLEAREKLSDIRPESIG 612

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QA +I G++PA +N+LLIY++
Sbjct: 613 QAGRITGVSPADINVLLIYLE 633


>gi|217032828|ref|ZP_03438308.1| hypothetical protein HPB128_176g6 [Helicobacter pylori B128]
 gi|298736843|ref|YP_003729373.1| glucose inhibited division protein A [Helicobacter pylori B8]
 gi|216945453|gb|EEC24115.1| hypothetical protein HPB128_176g6 [Helicobacter pylori B128]
 gi|298356037|emb|CBI66909.1| glucose inhibited division protein A [Helicobacter pylori B8]
          Length = 621

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 374/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 YVLTPSKEVLKRLSELDENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|154148722|ref|YP_001406290.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter hominis ATCC BAA-381]
 gi|205831519|sp|A7I199|MNMG_CAMHC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|153804731|gb|ABS51738.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Campylobacter
           hominis ATCC BAA-381]
          Length = 640

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/642 (44%), Positives = 380/642 (59%), Gaps = 40/642 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAG EA   AA++GA T LIT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 3   YDIIVIGGGHAGIEACLAAARMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D AGIQFR LN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q    
Sbjct: 63  GGQMGVCTDFAGIQFRTLNESKGPAVRGSRAQIDMDRYRIFMRNVLLNTSNLNISQEIAT 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE + I+ +     ++   + +++TTGTFL G+IH+G+ K+ AGR+G+ PS  L  S
Sbjct: 123 EILTENDQITGVKTHLGNVYETNRLIITTGTFLNGLIHVGENKLSAGRVGEFPSIRLSQS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--------- 236
                   GRLKTGT  R+D KTI +   E Q  D +  PFSF T    N          
Sbjct: 183 LKNLGLKMGRLKTGTCPRVDAKTIDFSALELQNGDAQAHPFSFKTRFFANEIEKFTKNLS 242

Query: 237 ------------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                       QI C IT TN +TH II  N   + +++G I   GPRYCPSIEDKI +
Sbjct: 243 KNFDENGNFNPTQIPCYITYTNEKTHEIIRNNFDRAPLFTGQIHGIGPRYCPSIEDKINK 302

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +R+ H +F+EP+       Y NG+ST+LP ++Q +F+ ++ G E   I+R GYAIEYD
Sbjct: 303 FADRDRHHVFVEPQTAEASEYYLNGLSTSLPYDVQVEFLHSVKGFENAKIVRHGYAIEYD 362

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           ++ P EL  +LETKKI+GL+LAGQINGTTGYEEAAAQGL+AGIN+A        +   R 
Sbjct: 363 FVEPTELKHSLETKKINGLYLAGQINGTTGYEEAAAQGLIAGINAALDIQNKAPLILRRD 422

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE------ 458
           ++YIGV+IDDL +KG  EPYRMFTSRAE+R+ LR DNA  RL+  G  +G I +      
Sbjct: 423 EAYIGVLIDDLVTKGTKEPYRMFTSRAEFRLLLREDNAIFRLSGYGHDIGLIKDYEFDEI 482

Query: 459 -RRQKRFAKYIQEYNFLRSLL----KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
            RR+ +  K I   NFL + +    K  +   K+L + +IS     +  T  + +   +F
Sbjct: 483 SRRKAQIQKGI---NFLLNNVITPNKENLAKLKSLGADAIS-----QNTTWQKIVGGKNF 534

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
           S + +  I      FS   +  +  E  Y  Y   Q  E  ++K      IP + D+S +
Sbjct: 535 SAEKIREIDSMFVDFSDDELSEILTECKYYFYIQMQKDEVAKMKNMLNTKIPTELDFSKI 594

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             LSNE+ EKL+   P  L  AS+I G+TPAA+++L IYIK+
Sbjct: 595 SGLSNEIIEKLNKFNPPTLFAASEISGVTPAAIDILHIYIKQ 636


>gi|325678157|ref|ZP_08157787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus albus 8]
 gi|324110162|gb|EGC04348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus albus 8]
          Length = 617

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/621 (43%), Positives = 372/621 (59%), Gaps = 19/621 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D+IVIG GHAGCEAA   A+LG  TAL T     + +M CNP+IGG  KGHLVREIDA
Sbjct: 3   NFDIIVIGAGHAGCEAALAGARLGLKTALFTITLDGLANMPCNPSIGGTAKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR AD   IQ R+LN  KGPAV   R Q DR  Y   M++ I   + L + Q E+
Sbjct: 63  LGGEMGRAADKTLIQSRMLNRGKGPAVHSLRAQIDRVAYHNLMKKTIEGTDGLYLKQAEI 122

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               F  +   +  +         C  V++ +GT+L G IH+G    P+G     P+  L
Sbjct: 123 TDLLFEEDGRTVRGVRTHLGVEYGCRAVIIASGTYLNGEIHVGVNTYPSGPDSVLPARKL 182

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S  +      R KTGTPAR+  ++I +DK E Q  DE + PFSF  + +   +++C +
Sbjct: 183 SDSLKEAGMTLRRFKTGTPARVHRRSIDFDKLEVQHGDEDIQPFSFTNEVLPENKVDCYV 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETH++IM+NI  S IYSG I + GPRYCPSIEDKI+RF ++  HQ+F+EP GL+T
Sbjct: 243 AYTNAETHKVIMDNIHLSPIYSGRIHAIGPRYCPSIEDKIMRFSDKPRHQLFIEPMGLDT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D  Y  G+S++LP ++Q +F+RTI GLE V I+R  YAIEYD  +P +L PTLE K+  G
Sbjct: 303 DEFYLQGMSSSLPVDVQLKFLRTIEGLEHVEIMRNAYAIEYDCCDPTDLLPTLEFKEFHG 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ NGT+GYEEAAAQGLVAGIN+A K      +   R  SYIG +IDDL +KGV +
Sbjct: 363 VYGAGQFNGTSGYEEAAAQGLVAGINAALKLKGEKPMVLDRASSYIGTLIDDLCTKGVSD 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----------KYIQEYN 472
           PYRM TSR+EYR+ LR DNAD RLT  G ++G IG+ R   F           K +   N
Sbjct: 423 PYRMLTSRSEYRLLLRQDNADLRLTETGHRVGLIGDERYNAFVKKKEQIDAEIKRVSAIN 482

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              S + +  L S+     +  FK         + +  P  S + L  I P+  +    V
Sbjct: 483 IAPSEVLNEYLVSQGTDPINNGFK-------LTQLIRRPQLSYKGLAFIDPERPELPEDV 535

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E++++   Y  Y   Q+ + + ++  E +LIP D DYS + +L  E  EKL+ ++P ++
Sbjct: 536 CEQVELMIKYEGYIKIQLEQVEAMRKLESKLIPADIDYSKIGSLRLEAAEKLAKIRPLSV 595

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I G+ PA +N+LL+Y+
Sbjct: 596 GQASRISGVNPADINVLLVYL 616


>gi|125719133|ref|YP_001036266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sanguinis SK36]
 gi|166200625|sp|A3CRB1|MNMG_STRSV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125499050|gb|ABN45716.1| Glucose inhibited division protein A, putative [Streptococcus
           sanguinis SK36]
          Length = 635

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKQELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 598 PETIGQASRISGVNPADISILMVYLE 623


>gi|332665150|ref|YP_004447938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333964|gb|AEE51065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 621

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/626 (42%), Positives = 381/626 (60%), Gaps = 25/626 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA LG+   L+T    TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVVGAGHAGCEAAVAAANLGSKVCLVTMNMQTIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G V D   +QFR+LN  KGPA+  PR Q+DR L+    +  +    N+D  Q  V 
Sbjct: 65  GGYSGIVTDHTMVQFRMLNRSKGPAMWSPRAQSDRMLFARKWRNMLEEHPNVDFWQDMVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G      ++  +V      I    VVLT GTFL G+IHIG+ ++  GR G+S +  +   
Sbjct: 125 GLVIRGGVVRGVVTSMGLEIPGKAVVLTNGTFLNGIIHIGEKQLGGGRAGESAAKGITEQ 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++  F+ GR+KTGTP R+DG+T+ +D  E Q  DE    FS+       +Q+ C +T T
Sbjct: 185 LVELGFEAGRMKTGTPPRVDGRTLNYDAMEVQPGDENPGKFSYTDTPPITKQLPCHVTYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + + H  +      S +++G I+  GPRYCPSIEDKI RF +++ HQ+F+EPEG +T  +
Sbjct: 245 STQVHETLKTGFDRSPMFNGRIQGLGPRYCPSIEDKINRFADKDRHQLFVEPEGWDTCEI 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LPE++Q++ +R IPG E V + RPGYAIEYDY  P +L  TLET+ +  LF 
Sbjct: 305 YVNGFSSSLPEDVQYKALRLIPGFENVKMFRPGYAIEYDYFPPTQLEMTLETRLVKNLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AG N+    N+ + +   R++ YIGV+IDDL +KG  EPYR
Sbjct: 365 AGQINGTTGYEEAACQGMMAGFNAHLAINEQEPLIIKRSEGYIGVLIDDLVNKGTQEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-----ERRQ------KRFAKYIQEYNFL 474
           MFTSRAEYRI LR DNAD RLTP+  +LG  G     ER Q      K   ++++EY+  
Sbjct: 425 MFTSRAEYRILLRQDNADLRLTPLAHQLGVRGMEERMERVQVKEASAKAIERFLEEYSIA 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF----SS 530
              +    L SK  S+T    +Q  K  T    L  P+ ++ +L  + PD  +F    + 
Sbjct: 485 PEQINQY-LESKESSAT----RQKVKLST---ILLRPNINLDDLREVVPDLHQFLQAHTQ 536

Query: 531 LVIERLQIESSYAAYTGR-QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +E  +I   Y  Y  + Q +  K  + EE +L     DY +LP+LS E +EKL+ ++P
Sbjct: 537 ECVELAEINMKYEGYIRKEQELVNKMNRLEEVKLW-DTLDYHALPSLSKEAREKLTRMRP 595

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QAS+I G++P+ +++LL+++ +
Sbjct: 596 RTIGQASRISGISPSDISVLLVHMGR 621


>gi|19882217|ref|NP_598400.1| protein MTO1 homolog, mitochondrial isoform b [Homo sapiens]
 gi|20981712|sp|Q9Y2Z2|MTO1_HUMAN RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|19335739|gb|AAL85490.1| MTO1 protein isoform III [Homo sapiens]
 gi|19335741|gb|AAL85491.1| MTO1 protein isoform IV [Homo sapiens]
 gi|55961490|emb|CAI14881.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569148|gb|EAW48763.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_d [Homo sapiens]
          Length = 717

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/655 (43%), Positives = 406/655 (61%), Gaps = 50/655 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP----------------- 337
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+P                 
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAIS 393

Query: 338 --------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
                   GY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN+
Sbjct: 394 AHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINA 453

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           + + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  
Sbjct: 454 SLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLR 513

Query: 450 GMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTA 504
           G K  GC+ ++R +R            S+LKS+   S    K +   SIS  +    R A
Sbjct: 514 GYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-A 572

Query: 505 YEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 687


>gi|315586210|gb|ADU40591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 35A]
          Length = 621

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 374/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+G    LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGVRVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDQQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|315638920|ref|ZP_07894092.1| glucose inhibited division protein A [Campylobacter upsaliensis
           JV21]
 gi|315481138|gb|EFU71770.1| glucose inhibited division protein A [Campylobacter upsaliensis
           JV21]
          Length = 616

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/618 (44%), Positives = 376/618 (60%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAG EA+A AAK+G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   YDIIVIGGGHAGIEASAAAAKMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDRYRIIARNKLLQLKNLEISQEQVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I  +    N       ++LTTGTFL G+IHIG+ +I AGR+G+  S  L NS
Sbjct: 122 ELIFKNDEIKGVRTNLNHNYYAKKLILTTGTFLNGLIHIGENQIEAGRVGEMASIKLGNS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K D   GRLKTGT  R+D K+I +   E Q  D    PFSF T   +  Q+ C I RT
Sbjct: 182 LRKLDLKIGRLKTGTCPRVDAKSIDFSVLEIQHGDVEPKPFSFRTKDFSPTQLPCFIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL TH+II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+       
Sbjct: 242 NLNTHQIIKDNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTKEASEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +++I G E   I R GYAIEYDYI+P EL+ +LE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLKSIKGFENAKITRFGYAIEYDYIDPTELYHSLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG + GIN+A      +     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMTGINAALALEDKEPFILRRDEAYIGVLIDDLVMKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE----YNFLRSLLKSL 481
           MFTSRAE+R+ LR +NA  RL   G K G + E+  +   K  +      NFL  L K L
Sbjct: 422 MFTSRAEFRLLLREENAIIRLGKYGFKFGLLSEKEFQMIEKSRENIERGLNFL--LTKEL 479

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             +++N    +   K+ G+ +     +  + ++   F +  L  +        +  ++ +
Sbjct: 480 TPSNEN----NAFLKELGEEKITSIVSLQKVVARASFDVGKLRKLDSFFENMDAYSLQEI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K      IP DFD+ ++  LSNE+ EKL   +P  L  AS
Sbjct: 536 LSEAKYYHYITMQKAQVEKMKDLSSLKIPVDFDFKNVSGLSNEVVEKLEKFRPPTLFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 EISGITPAALDILHIYIK 613


>gi|126655030|ref|ZP_01726469.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
 gi|126622509|gb|EAZ93214.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
          Length = 634

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/617 (42%), Positives = 371/617 (60%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  SFDIIVVGAGHSGCEAALAAARLGCRTLMLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +G V
Sbjct: 72  LGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQENLSIREGMV 131

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  I     +  +   V+LTTGTFL G I IG   + AGR G+  +  L 
Sbjct: 132 TDLVLGKNDEVIGIQTYFGTCFQAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFAAVGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           ++     F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF  +  +   Q+ C +
Sbjct: 192 DTLNDLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDEEVRWFSFDPEVWVEKEQMNCYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG   
Sbjct: 252 TRTTTKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEGREI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYDY+   + +PTL TKKI G
Sbjct: 312 PELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKKIQG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAAAQG+VAGIN+ +     + I F R +SY+G ++DDL +K + E
Sbjct: 372 LFCAGQVNGTTGYEEAAAQGIVAGINAVKFVKNEEMIIFPREESYLGTLVDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F    ++ N +    +   
Sbjct: 432 PYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWALFEH--KQANIVAEKERLYE 489

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              K     +I    D + +     T  + L  P F  Q+L       +  + +  E  +
Sbjct: 490 TRIKERDEVAIKIVNDTQQKIKGSATLADLLRRPKFHYQHLEKYGLGNQNLTIVEKEGAE 549

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ I+  +I     + +P D DY ++  LS E +EKL+ ++P  L QAS+
Sbjct: 550 IDIKYSGYLKRQQIQIDQITRHSNKKLPSDLDYMAIDTLSMEAREKLTKVRPLTLGQASR 609

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LL+Y++
Sbjct: 610 IGGVNPADINALLVYLE 626


>gi|281182426|ref|NP_001162543.1| protein MTO1 homolog, mitochondrial [Papio anubis]
 gi|163781002|gb|ABY40783.1| mitochondrial translation optimization 1 homolog, isoform 1
           (predicted) [Papio anubis]
          Length = 717

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/655 (43%), Positives = 407/655 (62%), Gaps = 50/655 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLEMHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSVPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP----------------- 337
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+P                 
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGVIL 393

Query: 338 --------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
                   GY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN+
Sbjct: 394 PHHNLSLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINA 453

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           + + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT  
Sbjct: 454 SLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADIRLTLR 513

Query: 450 GMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS---KNL-SSTSISFKQDGKTRTA 504
           G K  GC+ ++R +R            S+LKS+  +S   KNL    SIS  +    R A
Sbjct: 514 GYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFSSSKWKNLIPEVSISTSRSLPVR-A 572

Query: 505 YEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 LQLPKDIDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 687


>gi|261837662|gb|ACX97428.1| glucose inhibited division protein A [Helicobacter pylori 51]
          Length = 621

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/621 (44%), Positives = 374/621 (60%), Gaps = 15/621 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E+D L 
Sbjct: 6   DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q     
Sbjct: 66  GAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTES 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNSL  + 
Sbjct: 126 LIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNSLALNL 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C IT TN
Sbjct: 186 RELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCFITYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++    Y
Sbjct: 246 PITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI GL+LA
Sbjct: 306 INGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  EPYRM
Sbjct: 366 GQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTNEPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           FTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK  VLT  
Sbjct: 426 FTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKECVLTPS 485

Query: 486 -------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                    L+   I+ K DG +      L+   F+++ + S        +  V+E+++I
Sbjct: 486 KEVLKRLNELNENPINDKIDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPAALNLLLIYI--KKNT 617
            G+TPA L++L +YI  +KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|225012535|ref|ZP_03702971.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-2A]
 gi|225003512|gb|EEG41486.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-2A]
          Length = 623

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/620 (45%), Positives = 389/620 (62%), Gaps = 10/620 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +RS+DVIV+G GHAGCEAAA AA LG+ T LIT    T G MSCNPA+GG+ KG +VR
Sbjct: 1   MFDRSFDVIVVGAGHAGCEAAAAAANLGSKTLLITMNLQTTGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V D   IQ+++LN  KGPA+  PR Q+DR ++ L  +  +    NLD  
Sbjct: 61  EIDALGGYSGIVTDRTAIQYKMLNQSKGPAMWSPRAQSDRSMFSLEWRSMLEKTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++++  +V      I   +V+LT GTFL G+IHIG+     GR G+  + 
Sbjct: 121 QEMVVDLIVEQDLVKGVVTSLGLKIFGKSVILTNGTFLNGLIHIGEKNFGGGRAGEKAAV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQI 238
            L  S     F++GR+KTGTP R+DG+++ + K ++Q  D     FSF  +T  +T RQ+
Sbjct: 181 GLTTSLENLGFESGRMKTGTPPRVDGRSLDYTKMQEQPGDVTPSKFSFSDLTKPLT-RQL 239

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TNL+ H I+      S +++G I+S GPRYCPSIEDKI RF +++ HQIF+EPE
Sbjct: 240 SCHITHTNLDVHDILRSGFDRSPMFNGAIQSTGPRYCPSIEDKINRFSDKSQHQIFVEPE 299

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST+LP++IQ++ ++++ G E V   RPGYAIEYDY  P +LF +LETK
Sbjct: 300 GWNTVEVYVNGFSTSLPDDIQYKALKSVVGFENVKFFRPGYAIEYDYFPPTQLFHSLETK 359

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGTTGYEEAAAQGL+AGIN+  K++        R ++YIGV+IDDL  K
Sbjct: 360 NVQNLFFAGQINGTTGYEEAAAQGLMAGINAHLKASDKSPFVLGREEAYIGVLIDDLILK 419

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR  LR DNAD RLTP    +G +G+ R K+  +  Q+   L   L
Sbjct: 420 GTEEPYRMFTSRAEYRTLLRQDNADERLTPKAHSIGLLGDDRLKKVEQKQQQRADLVRFL 479

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLF---SICPDARKF--SSL 531
           +         ++  ++ K D  T+T    + LS P  + ++L    SI      F     
Sbjct: 480 RKTSYELNTANTVLLNNKSDTVTQTDKFAKLLSRPSITRKDLHQFKSINSYLNDFEIDDT 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+ +IE  YA Y  ++   A ++K  E  +IP+ F++  L +LS+E KEKL+ ++P  
Sbjct: 540 VFEQAEIEIKYAGYIEKEKRNADKLKRLENIVIPRGFNFDVLASLSHEAKEKLNKIRPDT 599

Query: 592 LLQASKIEGMTPAALNLLLI 611
           + QAS+I G+ P+ +++LL+
Sbjct: 600 IAQASRISGINPSDISVLLV 619


>gi|171460946|ref|NP_080934.2| protein MTO1 homolog, mitochondrial precursor [Mus musculus]
 gi|148694452|gb|EDL26399.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_b [Mus musculus]
          Length = 669

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/630 (45%), Positives = 405/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 36  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 95

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 96  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVE 155

Query: 126 GFNTE--------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        K+ +  +V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 156 DLVLAEPEPGYPGKSRVRGVVLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQ 215

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP RL  ++I +    K   D+  IPFSF++D +  + 
Sbjct: 216 PSIGLAQTLEKLGFMVGRLKTGTPPRLAKESINFSILNKHTPDDPSIPFSFLSDSVWIKP 275

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++EN+  ++      K  GPRYCPSIE K++RF  R  HQ++
Sbjct: 276 EDQLPCYLTHTNPRVDAIVLENLHLNSHVQETTK--GPRYCPSIESKVLRFPNRL-HQVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+
Sbjct: 333 LEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPS 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 393 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD RLT    K  GC+  +R +R          
Sbjct: 453 LTTLGTSEPYRMFTSRVEFRLSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEE 512

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S    K +    IS  +     +A + L Y +  +++L  + P+   K+
Sbjct: 513 GISVLKSIKFSSSKWKKLIPQIPISINRSLPV-SALDVLKYEEVDMESLVGVLPEPLEKY 571

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEKL 584
           ++   +  RL+IE+SY +    Q+ E KE++ +E   +P + DY ++   +LS E++EKL
Sbjct: 572 TACRELARRLKIEASYESVLSYQLQEIKEVQQDEALQLPHELDYLTIRDVSLSQEVREKL 631

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            + +P  +  AS+I G+TPAA+  LL +++
Sbjct: 632 HLSRPQTIGAASRIPGVTPAAIINLLRFVR 661


>gi|78099012|sp|Q923Z3|MTO1_MOUSE RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|14485753|gb|AAK63070.1| MTO1 [Mus musculus]
          Length = 669

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/630 (45%), Positives = 405/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 36  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 95

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 96  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVE 155

Query: 126 GFNTE--------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        K+ +  +V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 156 DLVLAEPEPGYPGKSRVRGVVLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQ 215

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP RL  ++I +    K   D+  IPFSF++D +  + 
Sbjct: 216 PSIGLAQTLEKLGFMVGRLKTGTPPRLGKESINFSILNKHTPDDPSIPFSFLSDSVWIKP 275

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++EN+  ++      K  GPRYCPSIE K++RF  R  HQ++
Sbjct: 276 EDQLPCYLTHTNPRVDAIVLENLHLNSHVQETTK--GPRYCPSIESKVLRFPNRL-HQVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+
Sbjct: 333 LEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPS 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 393 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD RLT    K  GC+  +R +R          
Sbjct: 453 LTTLGTSEPYRMFTSRVEFRLSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEE 512

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S    K +    IS  +     +A + L Y +  +++L  + P+   K+
Sbjct: 513 GISVLKSIKFSSSKWKKLIPQIPISINRSLPV-SALDVLKYEEVDMESLVGVLPEPLEKY 571

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEKL 584
           ++   +  RL+IE+SY +    Q+ E KE++ +E   +P + DY ++   +LS E++EKL
Sbjct: 572 TACRELARRLKIEASYESVLSYQLQEIKEVQQDEALQLPHELDYLTIRDVSLSQEVREKL 631

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            + +P  +  AS+I G+TPAA+  LL +++
Sbjct: 632 HLSRPQTIGAASRIPGVTPAAIINLLRFVR 661


>gi|300864991|ref|ZP_07109821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oscillatoria sp. PCC 6506]
 gi|300336992|emb|CBN54971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oscillatoria sp. PCC 6506]
          Length = 634

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/620 (43%), Positives = 372/620 (60%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IV+G GH+GCEAA  AA+L   T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 13  FDIIVVGAGHSGCEAALAAARLNCRTLLLTLNLDKIAWQPCNPAVGGPAKTQLTNEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV----IQ 121
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q+NL +    + 
Sbjct: 73  GGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQDNLSIRESMVT 132

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G N E   I  +         C  V+LTTGTFL G+I +G   +PAGR G+  +  
Sbjct: 133 DLVLGANDE---IIGVETYFGVAFGCKAVILTTGTFLGGIIWVGNKSMPAGRAGEFAAVG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L  +  K  F+TGRLKTGTPAR+D +++ +   E Q  D  +  FSF  D    R Q+ C
Sbjct: 190 LTETLNKLGFETGRLKTGTPARVDKRSLNYTNLEPQPGDADVRWFSFDPDVWIEREQMPC 249

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF +++ HQIF+EPEG 
Sbjct: 250 YLTRTTPETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKDSHQIFIEPEGR 309

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE +Q Q +RT+PGLE   ++RP YA+EYDY+   + FPTL TKKI
Sbjct: 310 DIPELYIQGFSTGLPENLQLQMLRTLPGLENCVMLRPAYAVEYDYLPATQCFPTLMTKKI 369

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQG+VAG+N+AR  N  + I F R  SY+G +IDDL +K +
Sbjct: 370 EGLFCAGQVNGTTGYEEAAAQGIVAGVNAARFVNHQEMIVFPREHSYLGTLIDDLCTKDL 429

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRS 476
            EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR    Q++ A  I E   L S
Sbjct: 430 REPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWELFQRKQANIIAEKERLYS 489

Query: 477 LLKSLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              + V   + +    ++  Q     + T  + L  P F  ++L               E
Sbjct: 490 ---TRVKEGEEVGKAILADMQQSIKGSITLADLLRRPGFHYEDLERYNLANSNLELAEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++   E R +P D DY ++  LS E +EKL+ +KP  + Q
Sbjct: 547 GAEIDIKYSGYLQRQQHQIDQVSKHEHRQLPPDLDYMTIETLSKESREKLATVKPLTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           A++I G+ PA +  LLIY++
Sbjct: 607 AARIGGVNPADVTALLIYLE 626


>gi|319746160|gb|EFV98432.1| glucose inhibited division protein A [Streptococcus agalactiae ATCC
           13813]
          Length = 633

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/620 (44%), Positives = 383/620 (61%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N      +VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C 
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +
Sbjct: 247 LTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRH 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R    +KR  ++  E   L S+
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSI 486

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIE 534
            LK +  T+K +    + FK      TA EF+  P   +++   F  C D     S VIE
Sbjct: 487 KLKPVSETNKRIQ--ELGFKPLTDALTAKEFMRRPQITYAVATDFVGCAD-EPLDSKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L Q
Sbjct: 544 LLETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|302672307|ref|YP_003832267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio proteoclasticus B316]
 gi|302396780|gb|ADL35685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio proteoclasticus B316]
          Length = 642

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/631 (44%), Positives = 377/631 (59%), Gaps = 22/631 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDV VIG GHAGCEAA   A+LG  T + T     I  M CNP IGG  KGHLVRE
Sbjct: 4   IREKYDVAVIGAGHAGCEAALACARLGLETIIFTMSADNIAFMPCNPHIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+V D   +Q ++LN  KGPAV   R QAD+  Y   M+R + +QE+L + Q
Sbjct: 64  IDALGGQMGKVIDKTFLQSKMLNTSKGPAVHSLRCQADKMEYSKEMKRVLEAQEHLSIKQ 123

Query: 122 GEVAGF--------NTEKNIISSIV---MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            EV+          N E      IV   +    +     V+L TGT+L+     G+    
Sbjct: 124 AEVSEILMEDYQVDNEEAEYTKKIVGVKIFSGIVYDVKAVILCTGTYLKSRCLTGEAITY 183

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           +G  G  PSN L  S +    +  R KTGTPAR+DG TI + K  +QF D  ++PFSF T
Sbjct: 184 SGPNGLLPSNLLSQSLIDAGIELRRFKTGTPARMDGNTIDYSKMSEQFGDSPVVPFSFDT 243

Query: 231 D--KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           D  ++   Q+ C +T TN +TH II  NI  S IY+G I+  GPRYCPSIEDK+V+F + 
Sbjct: 244 DPDEVQRPQVSCWLTYTNEKTHEIIRNNIDRSPIYAGIIEGIGPRYCPSIEDKVVKFPDH 303

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ+F+EPEG  T+ VY +G+S++LPE++Q    RT+PGLE   I++  YAIEYD + P
Sbjct: 304 ERHQVFVEPEGTYTNEVYIDGMSSSLPEDVQIAMYRTVPGLENCKIVKSAYAIEYDCLCP 363

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L P+LE K I GLF AGQ NG++GYEEAAAQGL AGIN+A +      +   R++ YI
Sbjct: 364 GQLMPSLEIKNIHGLFSAGQFNGSSGYEEAAAQGLYAGINAAMQIKNKPYLTIDRSEGYI 423

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +K  LEPYRM TSRAEYR+ LR DNAD RL   G ++G I E +  R    I
Sbjct: 424 GVLVDDLVTKENLEPYRMMTSRAEYRLLLRQDNADIRLRKKGYEVGLISEDKYNRLTDKI 483

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDG-----KTRTAY-EFLSYPDFSIQNLFSIC 522
            +   +   ++ L  T+   ++T   F +D      KT T+  E +  P+FS + L  I 
Sbjct: 484 DK---IAKEVERLKNTTVGANATIQKFMEDNGSSPLKTATSLAELICRPEFSYETLAPID 540

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            +    S  VIE+++I   Y  Y  RQ  + ++ K  EK+LIP D DYS + +L  E ++
Sbjct: 541 KERPVLSKEVIEQVEITIRYEGYINRQERQVEQFKKLEKKLIPADIDYSDVSSLRLEARQ 600

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           KL   +P N+ QAS+I G+ PA +++LLIY+
Sbjct: 601 KLEKFRPTNIGQASRIGGVNPADVSVLLIYL 631


>gi|187735314|ref|YP_001877426.1| glucose inhibited division protein A [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425366|gb|ACD04645.1| glucose inhibited division protein A [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 628

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/636 (43%), Positives = 375/636 (58%), Gaps = 47/636 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GHAG EAA  A++LG S A++TH   TIG MSCNPAIGGL KGH+VREIDA+
Sbjct: 12  FDVLVVGAGHAGIEAALAASRLGCSVAVLTHNLDTIGQMSCNPAIGGLAKGHIVREIDAM 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA  IQFR+LN  KGP+VR PR Q D+  YR  M+  + +   + + QG+V 
Sbjct: 72  GGAMGLNTDATAIQFRMLNASKGPSVRAPRAQCDKTAYRTRMKMVLETAPGIRLFQGDVV 131

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               N E+    + V      I   +V++ +GTF++G++H+G   I  GRMG   S+SL 
Sbjct: 132 KLLVNGEQQATGA-VTSLGCAIHARSVIICSGTFMKGLLHVGLQHITGGRMG-CASSSLS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR------- 236
                  F   RLKTGT  R++G++I +   E Q  D     FS+ +  I  R       
Sbjct: 190 ADLAMLGFQVERLKTGTSPRVNGRSIDFSVCEIQPGDAPEALFSYRSRDILKRDSEPFCT 249

Query: 237 ------------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                       Q+ C IT TN  TH II +N+K S +YSG I+  GPRYCPSIEDKIVR
Sbjct: 250 LNTWGDENFRMKQMPCWITYTNQTTHDIIRKNLKFSPLYSGIIEGVGPRYCPSIEDKIVR 309

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F E+N HQ+FLEPEG +T+  Y NG+ST+LP   Q  FI TIPGLE   +IRPGYA+EYD
Sbjct: 310 FAEKNSHQVFLEPEGRSTEEFYLNGVSTSLPYSAQCDFIHTIPGLENAQLIRPGYAVEYD 369

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +  P +L PTLETK +  L+ AGQINGT+GYEEAAAQGL+AG N+A K+     +   R 
Sbjct: 370 FCPPTQLHPTLETKLVENLYFAGQINGTSGYEEAAAQGLMAGANAALKTLGKPSLVLRRD 429

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG---CIGERRQ 461
            +YIGVMIDDL +KG  EPYRMFTSRAE+R+ LR DNAD RL P+  + G   C   R+ 
Sbjct: 430 QAYIGVMIDDLVTKGTDEPYRMFTSRAEFRLLLRQDNADLRLAPLAFEAGLITCEMARKA 489

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +     ++E      ++K+  L  + + S S   K+ G   T         F +++L +I
Sbjct: 490 EDRKNAVEE-----GIIKAAALKHEGV-SLSTWLKRPGNDWTLLPEELKKMFHVEHLDAI 543

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             D +               Y  +  RQ  +A++I   E + IP D DY  + AL  E  
Sbjct: 544 ATDIQ---------------YEGHIERQKKQAEKIIRMENKTIPSDIDYKHVHALKKEAV 588

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            KL  ++P  + QAS+I G+TPA + LLL++++K +
Sbjct: 589 IKLGNIRPATIGQASRIPGITPADIALLLVHLQKRS 624


>gi|168334918|ref|ZP_02693038.1| glucose inhibited division protein A [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 635

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/617 (43%), Positives = 378/617 (61%), Gaps = 11/617 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D IVIGGGHAGCEAA   A+LG  T +       I  M CNP IGG  KGHLV+EIDAL 
Sbjct: 9   DAIVIGGGHAGCEAALSLARLGKKTVIFCLNIEAIAKMPCNPNIGGTSKGHLVKEIDALG 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ ++LN  KGPAV   R QAD+  Y  AM + + ++ NL + Q EV+ 
Sbjct: 69  GEMGKNIDKTYIQSKMLNTSKGPAVHSLRAQADKVEYHKAMLKVLDAETNLTIKQQEVSD 128

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +     ++     VV+ TGT+L+  I IG+    AG  G   S  L NS 
Sbjct: 129 ILIENARVMGVRTITGAIYYAKAVVVCTGTYLKSKIFIGEFAENAGPDGLKSSQVLSNSL 188

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGITR 244
           +       R KTGTPAR+D +TI +   E Q  D +++PFSF      I   QI+C +T 
Sbjct: 189 LDNGITLRRFKTGTPARVDKRTIDFTAMEAQLGDSKVVPFSFSNSAASIKKNQIQCFLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  S +Y G I+  GPRYCPSIEDK+VRF +++ HQIF+EPEG+ T+ 
Sbjct: 249 TNEQTHQIIRDNLDRSPLYGGKIEGVGPRYCPSIEDKVVRFADKSRHQIFIEPEGVETNE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q Q +R++ GLE V +IR GYAIEYD INP  L  +LE K ISGLF
Sbjct: 309 MYVQGMSSSLPEEVQIQMLRSVRGLENVEVIRGGYAIEYDCINPTSLLHSLENKVISGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEAAAQGLVAGIN+A K +  + +   R + YIGV+IDDL  KG  EPY
Sbjct: 369 FAGQINGSSGYEEAAAQGLVAGINAALKIDAKEPLIIDRAEGYIGVLIDDLVIKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--V 482
           RM TSRAEYR+ LR DNAD RL   G  +G + +     +AK++ +   + + ++ +  V
Sbjct: 429 RMLTSRAEYRLLLRQDNADIRLMTKGHDIGLVPD---DIYAKFLDKQEVIEAEIERIKKV 485

Query: 483 LTSKNLSSTSISFKQDGKTRTA----YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                 +  SI   +     T+    +E L  P+   ++  ++  D  + S  +IE+++I
Sbjct: 486 FVGTTATVQSILMAKGSTPLTSGMSLHELLKRPELDYKDFAAVNLDGPELSDEIIEQIEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ+I+  + K  EK+LIP++  Y  + +L  E ++KL  +KP ++  AS+I
Sbjct: 546 TLKYEGYIKRQLIQVDQFKKLEKKLIPENLKYEDIKSLRIEARQKLLEIKPKSIGAASRI 605

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA ++++L+Y+++
Sbjct: 606 SGVSPADISVMLVYMEQ 622


>gi|208434162|ref|YP_002265828.1| glucose inhibited division protein A [Helicobacter pylori G27]
 gi|226700964|sp|B5Z9Y2|MNMG_HELPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|208432091|gb|ACI26962.1| glucose inhibited division protein A [Helicobacter pylori G27]
          Length = 621

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/627 (44%), Positives = 375/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ VAAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLVAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +LS  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLSTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+I+ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNIEKMRSFFSFLAPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|76786721|ref|YP_330690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae A909]
 gi|77407093|ref|ZP_00784094.1| glucose inhibited division protein A [Streptococcus agalactiae
           H36B]
 gi|123601023|sp|Q3JYG3|MNMG_STRA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76561778|gb|ABA44362.1| glucose-inhibited division protein A [Streptococcus agalactiae
           A909]
 gi|77174300|gb|EAO77168.1| glucose inhibited division protein A [Streptococcus agalactiae
           H36B]
          Length = 633

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/620 (44%), Positives = 383/620 (61%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N      +VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C 
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +
Sbjct: 247 LTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRH 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R    +KR  ++  E   L S+
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSI 486

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIE 534
            LK +  T+K +    + FK      TA EF+  P   +++   F  C D     S VIE
Sbjct: 487 KLKPVSETNKRIQ--ELGFKPLTDALTAKEFMRRPQITYAVATDFVGCAD-EPLDSKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L Q
Sbjct: 544 LLETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|291547597|emb|CBL20705.1| glucose-inhibited division protein A [Ruminococcus sp. SR1/5]
          Length = 629

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/629 (42%), Positives = 385/629 (61%), Gaps = 29/629 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IV+G GHAGCEA+   A+LG +T + T    +I  M CNP +GG  KGHLVRE+DAL
Sbjct: 8   FDIIVVGAGHAGCEASLACARLGLNTVMFTVSVDSIALMPCNPNVGGSSKGHLVRELDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + ENL + QGEV 
Sbjct: 68  GGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKQAYSTEMRKTLENTENLTIRQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +     +      VVL TGT+L+     G +    G  G   +N L +S
Sbjct: 128 ELLVEDGHITGVKTFSGATYHAKAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANYLTDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
             K   +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +   Q  C +T
Sbjct: 188 LKKLGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTDPESVQIEQKSCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEGL T+
Sbjct: 248 YTNEKTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKKRHQVFIEPEGLYTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++   ++PGLE   I++  YAIEYD INP++L+PTLE KKI GL
Sbjct: 308 EMYIGGMSSSLPEDVQYEMYHSVPGLENARIVKNAYAIEYDCINPRQLYPTLEFKKIKGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K   EP
Sbjct: 368 FSGGQFNGSSGYEEAAAQGLIAGINAAMEVKGREQLILDRSEAYIGVLIDDLVTKENHEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-------ERRQKRFAKYIQEYNF--- 473
           YRM TSRAEYR+ LR DNAD RL   G ++G I        + +++R  + I+       
Sbjct: 428 YRMMTSRAEYRLLLRQDNADLRLRKKGWEVGLIDDETYHKLQEKERRIQEEIERVEHATV 487

Query: 474 -----LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
                ++SLL+SL  T    S T+I+           E +  P+ + + L  I  +  + 
Sbjct: 488 GGSAEVQSLLESLNSTLLK-SGTTIA-----------ELIRRPELNYKVLAPIDKERPEL 535

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I   Y  Y  RQM + ++ K  E++ +P+D DY  + +L  E ++KL   +
Sbjct: 536 PEDVCEQVEINIKYDGYIRRQMKQVEQFKKLEQKKLPEDIDYEDVGSLRIEARQKLEAYR 595

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           P ++ QAS+I G++PA +++LL+Y++  +
Sbjct: 596 PVSIGQASRISGVSPADISVLLVYLESRS 624


>gi|262281667|ref|ZP_06059436.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus sp. 2_1_36FAA]
 gi|262262121|gb|EEY80818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus sp. 2_1_36FAA]
          Length = 639

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/642 (41%), Positives = 386/642 (60%), Gaps = 33/642 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNPESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIY-------IKKNTVKLNEI 623
           P  + QAS+I G+ PA +++L++Y       I KN  K N +
Sbjct: 598 PETIGQASRISGVNPADISILMVYLEGKARSISKNKEKQNHV 639


>gi|323341064|ref|ZP_08081312.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
 gi|323091485|gb|EFZ34109.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
          Length = 635

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/621 (42%), Positives = 376/621 (60%), Gaps = 8/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  A+++G  T LIT     +  M CNPA+GG  KG +VRE+DAL
Sbjct: 12  YDVIVVGAGHAGCEAALAASRMGNKTLLITINLEMVAFMPCNPAVGGPAKGIVVREVDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y + M+  +  + NL + QG V 
Sbjct: 72  GGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTLEKEPNLTLRQGIVD 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  I  +V    +      VVLTTGT  RG I IG+L   +G     P+  L  +
Sbjct: 132 DLIVEEGKIKGVVTNTGACYGAKAVVLTTGTAARGKIIIGELMYSSGPNNTQPAIKLSEN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIECG 241
             +  F   R KTGTP R+DG TI + KTE+Q  D     FS+ +          Q+ C 
Sbjct: 192 LERLGFKLKRFKTGTPPRVDGNTIDYAKTEEQPGDSTPHLFSYESKDEDYLDVKNQLSCW 251

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQ+F+EPEG N
Sbjct: 252 LTYTNEKTHKLIQDNLDRAPMYTGAIEGVGPRYCPSIETKIVRFADKARHQLFVEPEGRN 311

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD  Y  G+ST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK + 
Sbjct: 312 TDEYYVQGLSTSMPEEIQLKMVHSIEGLEHAEMMRPGYAIEYDVVEPYQLRPTLETKLVR 371

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQ NGT+GYEEAA QG++AGIN+ R +   + I   R+D+YIGVM+DDL +KG  
Sbjct: 372 GLYTAGQTNGTSGYEEAAGQGILAGINAGRHALGKEEIVLKRSDAYIGVMVDDLVTKGTN 431

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R ++F +  +      + L+S+
Sbjct: 432 EPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYEKFLEKKKAIKEEEARLESI 491

Query: 482 VLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
            +         +    D   +    A +FL  P  +  +L    P   K     VIE+++
Sbjct: 492 RIKPGKEVDEYLEKHGDRALKDGVLASDFLRRPYVTYADLLHFIPAPEKTLDRHVIEQIE 551

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  ++  + +++K  E + IP+  DYS++  L+ E  +KL+ ++P  L QAS+
Sbjct: 552 IQYKYSGYIKKEYEQIEKLKRMEAKKIPERIDYSAIEGLATEAMQKLTKIQPETLAQASR 611

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L +YI++  +
Sbjct: 612 ISGVNPADLAILAVYIEQGKI 632


>gi|293374959|ref|ZP_06621255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325844315|ref|ZP_08168091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sp. HGF1]
 gi|292646436|gb|EFF64450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325489182|gb|EGC91564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sp. HGF1]
          Length = 625

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/622 (43%), Positives = 380/622 (61%), Gaps = 10/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T ++T   + IG M CNPAIGG  KG +VREIDAL
Sbjct: 3   YDVIVVGGGHAGIEAALAPARMGCQTLMVTGDINRIGHMPCNPAIGGPAKGIVVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   MQ+ +LSQENLDV +  V 
Sbjct: 63  GGEMGANTDKTHIQMRMLNTGKGPAVRALRAQADKVDYPKEMQKTVLSQENLDVKEAIVD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  I ++    I   TV+LTTGT++   + I      +G  G   S  L  S
Sbjct: 123 NLIVEDGTVKGITLESGEQIFGKTVILTTGTYMHSKVMISDEITLSGPDGAKTSLGLSQS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
                F+  RLKTGTP R+   ++ + KTE Q  D+ +  FSF T +      Q+ C +T
Sbjct: 183 LKDLGFELFRLKTGTPPRVATDSVDFSKTEIQPGDDVVRAFSFDTKEHLPLEDQVPCYLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ +TH+IIM+N+  S++YSG ++  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D
Sbjct: 243 YTSGDTHQIIMDNLTRSSMYSGVVEGVGPRYCPSIEDKVVRFNDKPRHQIFLEPESKHID 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LP ++Q + IRTI GLE   I+R  YAIEYD I P +L+P+LETK +  L
Sbjct: 303 EIYVQGFSSSLPRDVQEKMIRTIAGLENCRIVRYAYAIEYDAIKPVQLWPSLETKLVKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG LEP
Sbjct: 363 YSAGQINGTSGYEEAAGQGIMAGINAALRVQGKDPLILKRSEAYIGVLIDDLVTKGTLEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RL   G ++G I E +   F     +    +  L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLREYGHQVGLINEEKYAAFLDKKAQIEAEKERLSQIKI 482

Query: 484 TSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
           T K      L S   S  +DG   TA E L  P+ + Q++ S+  +  +  S  VIE+++
Sbjct: 483 TPKGNTNEYLESIPSSPLKDGI--TALELLKRPEITYQHIHSLIEEKNESISEEVIEQVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + + + +++   E++ IP   DY  +P L+ E K+KL  ++P  + QA++
Sbjct: 541 IQVKYEGYINKALQQVEKLHKVEEKKIPDYIDYDDVPNLAIEAKQKLKDIRPLTIGQATR 600

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+ PA +++L++Y++    K
Sbjct: 601 ISGVNPADISILMVYLESGKFK 622


>gi|326804312|ref|YP_004322130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650443|gb|AEA00626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 644

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/624 (42%), Positives = 370/624 (59%), Gaps = 12/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+G GHAGCEAA  +A++G  T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SFDVIVVGAGHAGCEAALASARMGMETLLVTIDINMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+E Y   M+R +  QE L + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKEAYAREMRRTVERQEGLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  ++ R    +LT GT  RG I IG+LK  AG     P+ +L  
Sbjct: 128 DDLVVEDGVCRGVITQTGALYRSKATILTMGTSARGEIIIGELKYSAGPNNSQPALNLTK 187

Query: 185 SFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
           +   K+ FD  R KTGTP R+D KT+ + K E Q        FSFMT        + Q+ 
Sbjct: 188 NLAEKYGFDITRFKTGTPPRVDKKTVDFSKMEIQPGSAEPNHFSFMTPDENYIPVSEQVP 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH +I  N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 248 CHLTFTNAKTHELIRANLDRAPMFTGIVEGVGARYCPSIEDKIVRFADKPKHQLFLEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            + + +Y  G+ST+LPE++Q + + +I G+EK  IIR GYAIEYD + P +L  T ETK 
Sbjct: 308 RDNEEIYLQGLSTSLPEDVQIEMVHSITGMEKAQIIRDGYAIEYDVVRPSQLKATFETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQ NGT+GYEEAA QGL AGIN+  K    +     R ++YIGV++DDL +KG
Sbjct: 368 IENLYTAGQTNGTSGYEEAAGQGLYAGINAVLKIQGKEAFILGRDEAYIGVLVDDLVTKG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G + E R + F  +    N     L+
Sbjct: 428 TTEPYRLLTSRAEYRLLLRHDNADWRLTEKGYEIGLVTEDRYQAFKAHQAAVNEELDRLE 487

Query: 480 SLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              L   +     L S   S  +DG    A E L  P+ SI ++    P  +     V E
Sbjct: 488 HTRLKPSDDLQAYLESKGSSRLKDGI--LASELLRRPELSIDDILKFAPGDKDLGHKVYE 545

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            + +   YA Y  +   + K ++  E +LIP+D DYS +  L+ E K++LS ++P  L Q
Sbjct: 546 EVAVAIKYAGYIEKAQKQVKRLRKMEGKLIPEDIDYSQIEGLATEAKDRLSTIEPRTLAQ 605

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS++ G+ PA +++L +Y++  TV
Sbjct: 606 ASRVSGVNPADVSILAVYLESATV 629


>gi|283797199|ref|ZP_06346352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. M62/1]
 gi|291075160|gb|EFE12524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. M62/1]
          Length = 641

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/622 (43%), Positives = 380/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+ V+G GHAGCEAA  AA+L   T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEETYDIAVVGAGHAGCEAALAAARLRMETVVFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD+E+Y   M+R + + E+L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKEMYTREMRRVLENTEHLTIKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E+  ++ I     ++  C  VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVTEILAEEGRVTGIRTLSGAVYHCRAVVLATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKALGIEMYRFKTGTPARVDRRSIDFSKMEEQFGDDRVVPFSFTTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNERTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQTAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLRATLEFKA 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQGKEGIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I + R +R  +  Q+   +R  ++
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSGIGHEIGLIDDERYERVLRKEQQ---IREEVE 480

Query: 480 SLVLTSKNLS-STSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L  T    +       K  G T      T  E +  P+ S + +  I P        V 
Sbjct: 481 RLNRTPVGATHEVQECLKSYGSTELKTGSTLAELVRRPELSYEAVKEIDPKRPVLDWDVA 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ+ +  + K  E R + + FDYS++ +L  E  +KL++ KP N+ 
Sbjct: 541 EQVNINIKYEGYIKRQLQQVAQFKKMESRKLDESFDYSTVKSLRKEAVQKLNLYKPRNIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+++++
Sbjct: 601 QASRISGVSPADISVLLVHLEQ 622


>gi|322390498|ref|ZP_08064016.1| glucose inhibited division protein A [Streptococcus parasanguinis
           ATCC 903]
 gi|321142772|gb|EFX38232.1| glucose inhibited division protein A [Streptococcus parasanguinis
           ATCC 903]
          Length = 636

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/615 (42%), Positives = 377/615 (61%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVENGKVVGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE ++ E
Sbjct: 489 KPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|28209870|ref|NP_780814.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium tetani E88]
 gi|73919634|sp|Q899S1|MNMG_CLOTE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28202305|gb|AAO34751.1| glucose inhibited division protein A [Clostridium tetani E88]
          Length = 623

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/612 (43%), Positives = 377/612 (61%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA  AA++G    + T    ++  M CNP IGG  KGHLVREIDAL
Sbjct: 8   YDVVVVGAGHAGCEAALAAARIGCKVLICTISLDSVALMPCNPNIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + ++EN+ + Q EV 
Sbjct: 68  GGEMGVNIDNTFIQSRMLNTSKGPAVHSLRAQADKSRYSNRMKYILENEENVTLKQIEVI 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  I+ ++ +     TVVL TGT+L   I IG++    G  G  P+  L  +
Sbjct: 128 SIDIENGKVKGILTKNGAYYNAKTVVLATGTYLNARIIIGEVAYSGGPNGLFPAKELTKN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M       R KTGTPAR++ KTI + K  +Q  DE+++PFSF+TDK+   Q+ C +T T
Sbjct: 188 LMDLGISIRRFKTGTPARVNKKTIDFSKMIEQPGDEKIVPFSFLTDKLEREQVSCYLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH +I +N+  S +++G I+  G RYCPSIEDK+ RF ++N HQ+F+EPEG  T+ +
Sbjct: 248 NENTHEVIRKNLHRSPMFNGSIEGVGARYCPSIEDKVNRFPDKNKHQVFIEPEGEYTNEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y +G+S++LPEEIQ    RT+PGLE V  +R  YAIEYD I+P+EL  +LE+K I GLF 
Sbjct: 308 YVSGLSSSLPEEIQVAMYRTVPGLENVEFLRTAYAIEYDCIDPQELKLSLESKNIEGLFS 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
            GQING++GYEEAAAQGL+AGIN+A K  + D +  +R+D YIGV+IDDL +KG  EPYR
Sbjct: 368 GGQINGSSGYEEAAAQGLIAGINAAMKVKEKDPLLLTRSDGYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR+EYR+ LR  NAD RLT  G  +G + E R KR+    +        +K++ +T+
Sbjct: 428 MMTSRSEYRLLLRQGNADLRLTQKGYDVGLVSEERYKRYINRRESIKSEIERIKNVQITN 487

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           K   N    S++  +  K  + YE +  P+     +  +          V E +   + Y
Sbjct: 488 KKEVNEFLLSLNSSELKKPISLYELIKRPELDYYKVEQLDKGRINLPEDVQEEVNTTAKY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q+ +  + K  E +L+P D DYS +  L  E  +KLS ++P N+ QAS+I G++
Sbjct: 548 EGYIEKQLEQVNQFKKFENKLLPNDIDYSKVYGLRIESVQKLSKIRPMNIGQASRISGVS 607

Query: 603 PAALNLLLIYIK 614
           PA +++LLIY++
Sbjct: 608 PADISVLLIYLE 619


>gi|172037374|ref|YP_001803875.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. ATCC 51142]
 gi|171698828|gb|ACB51809.1| glucose inhibited division protein A [Cyanothece sp. ATCC 51142]
          Length = 634

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/620 (43%), Positives = 373/620 (60%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  SFDIIVVGAGHSGCEAALAAARLGCRTLMLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +G V
Sbjct: 72  LGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQENLSIREGMV 131

Query: 125 A----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                G N E   +  I     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 132 TDLVLGNNDE---VIGIQTYFGTCFEAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++     F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF     +  +Q+ 
Sbjct: 189 GLTDTLNDLGFETGRLKTGTPARVDKRSVDYSQLEPQPPDEEVRWFSFDPYVWVEKKQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTSKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYD++   + +PTL TKK
Sbjct: 309 REIPELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDFLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAGIN+ +  N  + I F R +SY+G +IDDL +K 
Sbjct: 369 IQGLFCAGQVNGTTGYEEAAAQGIVAGINAVKFVNNEEMIIFPREESYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G K+G I +RR   F +  ++ N +    +
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRMTPLGRKIGLIDDRRWALFEQ--KQANIVAEKER 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                 K     +I    D + +     T  + L  P F  Q+L       +  + +  E
Sbjct: 487 LYETRIKERDEVAIKIVNDTQQKIKGSATLADLLRRPKFHYQHLEQYGLGNKDLTIVEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ I+  +I     + +P D DY ++  LS E +EKL+ ++P  L Q
Sbjct: 547 GAEIDIKYSGYLKRQQIQIDQITRHSNKKLPSDLDYMTIDTLSMEAREKLTKVRPLTLGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +N LL+Y++
Sbjct: 607 ASRIGGVNPADINALLVYLE 626


>gi|223933690|ref|ZP_03625666.1| glucose inhibited division protein A [Streptococcus suis 89/1591]
 gi|330833756|ref|YP_004402581.1| glucose inhibited division protein A [Streptococcus suis ST3]
 gi|223897643|gb|EEF64028.1| glucose inhibited division protein A [Streptococcus suis 89/1591]
 gi|329307979|gb|AEB82395.1| glucose inhibited division protein A [Streptococcus suis ST3]
          Length = 638

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/616 (43%), Positives = 378/616 (61%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA   A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMVAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN+ KGPAVR  R QAD+  Y   M+R +  QENL + Q  +
Sbjct: 68  LGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQADKAEYAAEMKRTVERQENLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I IG LK  +G      S +L +
Sbjct: 128 DEILVEDGKVIGVRTATNQKFSAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASITLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  +   + GR KTGTP R++ +TI +++TE Q  DE+   FSF++  +     QI C +
Sbjct: 188 NLKELGLEIGRFKTGTPPRVNARTINYEETEIQPDDEKPNHFSFLSKDEDYLQDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT
Sbjct: 248 TYTNATSHEIINSNLHRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEGRNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 DEIYVQGLSTSLPEDVQQDLIHSIKGLENAQMMRTGYAIEYDMVMPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG +E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R + F  +  +++     L+S+ 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLESIK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
           L      N    ++ FK      TA EF+  PD +  +  + I P A    +  IE ++ 
Sbjct: 488 LKPIKETNEKVVAMGFKPLTDALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIELIET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K  E++ IP D D+  + +++ E ++K  ++ P  + QAS+I
Sbjct: 548 EVKYEGYIAKALDQVEKMKRMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +++L++Y++
Sbjct: 608 SGVNPADISILMVYLE 623


>gi|256545943|ref|ZP_05473298.1| glucose inhibited division protein A [Anaerococcus vaginalis ATCC
           51170]
 gi|256398365|gb|EEU11987.1| glucose inhibited division protein A [Anaerococcus vaginalis ATCC
           51170]
          Length = 639

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 377/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ +YDV+V+G GHAGCEA   +A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 15  IDEAYDVVVVGAGHAGCEAGLASARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + +QENLD+ +
Sbjct: 75  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLENQENLDLFE 134

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + S+     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 135 QEVDKINIEDGKVKSVETIQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 194

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L +S  +  F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+    D    +Q 
Sbjct: 195 LSDSLEQLGFSLRRFKTGTPARVDKKSLDLSKTEIQKGDENVVAFSFLNEDKDFSDKKQE 254

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN+  S +Y+G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 255 ACYLTYTTEKTKEIIMENLDRSPMYAGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 314

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 315 SLSTDEMYIQGVSSTLPQEVQKEFYKTIEGLENCKIIRPAYGIEYDCLDSTNLKRSLESK 374

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGL+AGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 375 EIENLFFAGQINGSSGYEEAAGQGLIAGINAALKLRGEDALILDRSDAYIGVLIDDLVTK 434

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSR EYR+++R DNAD RLT  G ++G + + R ++     +      S L
Sbjct: 435 GTNEPYRMMTSRCEYRLTMRQDNADFRLTEKGHEIGLVSDERYEKMVVKRENIEKEISRL 494

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K+++++    ++  +        +T Y   + +  P+ + + L  + PD  +       +
Sbjct: 495 KNVMISPNEENNEILEKIGSNPIKTGYSLFDLIKRPELTYKKLEVLDPDRPELPKFQQIQ 554

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DYS +  L  E  EKL+ +KP ++ QA
Sbjct: 555 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDIDYSKINGLKKESAEKLNKIKPDSIGQA 614

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 615 SRISGVSPADINVLLIRLK 633


>gi|24380471|ref|NP_722426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mutans UA159]
 gi|81170580|sp|Q8DRS6|MNMG_STRMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24378501|gb|AAN59732.1|AE015035_1 glucose inhibited division protein-like protein GidA [Streptococcus
           mutans UA159]
          Length = 631

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 380/619 (61%), Gaps = 12/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDVIVIGAGHAGVEASLATSRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D + IQ R+LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKSYIQMRMLNTGKGPAVRALRAQADKALYARNMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       V++TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DEILVEDGKVIGVRTATNQKYSAQAVIVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +      + GR KTGTP R+   +I +D+TE Q  D++   FSFM+  +     QI C +
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKANSIHYDETEIQPGDKKANHFSFMSKDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ+FLEPEG  T
Sbjct: 248 TYTNQSSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKDVVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF     ++  E   L S+ 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEIGHQVGLVNEERYMRFQIRKNQFDNELTRLSSIK 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIER 535
           LK +   +K +    + FK      TA EF+  P+  ++I   F + P A      VIE 
Sbjct: 488 LKPVAEINKRIE--ELGFKPLTDALTAKEFMRRPEINYAIATSF-VGPAAESLDEKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +++L++Y++
Sbjct: 605 SRISGVNPADISILMVYLE 623


>gi|332365069|gb|EGJ42834.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK355]
          Length = 635

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTELGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFIRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE L+ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELLETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 598 PETIGQASRISGVNPADISILMVYLE 623


>gi|325686452|gb|EGD28481.1| glucose inhibited division protein A [Streptococcus sanguinis SK72]
          Length = 635

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIVVIGAGHAGVEASLAASRMGCKVLLATLNIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 598 PETIGQASRISGVNPADISILMVYLE 623


>gi|306826060|ref|ZP_07459396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431776|gb|EFM34756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 637

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/617 (42%), Positives = 376/617 (60%), Gaps = 10/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKKLGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF   I++  F   +L+   +
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFE--IKKNQFDNEMLRLDSI 486

Query: 484 TSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQ 537
             K +  T     ++ FK      TA EFL  P+ S Q++ + I P A      VIE ++
Sbjct: 487 KLKPVQETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKVIELIE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+
Sbjct: 547 TEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKVINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++L++Y++
Sbjct: 607 ISGVNPADISILMVYLE 623


>gi|312866771|ref|ZP_07726984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis F0405]
 gi|311097554|gb|EFQ55785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis F0405]
          Length = 636

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/615 (42%), Positives = 377/615 (61%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVENGKVIGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE ++ E
Sbjct: 489 KPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|325698057|gb|EGD39938.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK160]
 gi|327463810|gb|EGF10126.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1057]
 gi|332359521|gb|EGJ37340.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1056]
          Length = 659

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|323350803|ref|ZP_08086462.1| glucose inhibited division protein A [Streptococcus sanguinis
           VMC66]
 gi|322122977|gb|EFX94680.1| glucose inhibited division protein A [Streptococcus sanguinis
           VMC66]
          Length = 635

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTELGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFIRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE L+ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELLETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 598 PETIGQASRISGVNPADISILMVYLE 623


>gi|12859113|dbj|BAB31540.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/630 (45%), Positives = 404/630 (64%), Gaps = 25/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 36  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 95

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 96  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVE 155

Query: 126 GFNTE--------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        K+ +  +V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 156 DLVLAEPEPGYPGKSRVRGVVLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQ 215

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP RL  ++I +    K   D+  IPFSF++D +  + 
Sbjct: 216 PSIGLAQTLEKLGFMVGRLKTGTPPRLGKESINFSILNKHTPDDPSIPFSFLSDSVWIKP 275

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I++EN+  ++      K  GPRYCPSIE K++RF  R  HQ++
Sbjct: 276 EDQLPCYLTHTNPRVDAIVLENLHLNSHVQETTK--GPRYCPSIESKVLRFPNRL-HQVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+
Sbjct: 333 LEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPS 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 393 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD RLT    K  GC+  +R +R          
Sbjct: 453 LTTLGTSEPYRMFTSRVEFRLSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEE 512

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF 528
             S+LKS+  +S    K +    IS  +     +A + L Y +  +++L  + P+   K+
Sbjct: 513 GISVLKSIKFSSSKWKKLIPQIPISINRSLPV-SALDVLKYEEVDMESLVGVLPEPLEKY 571

Query: 529 SSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEKL 584
           ++   +  RL+IE+SY +    Q+ E KE+  +E   +P + DY ++   +LS E++EKL
Sbjct: 572 TACRELARRLKIEASYESVLSYQLQEIKEVHQDEALQLPHELDYLTIRDVSLSQEVREKL 631

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            + +P  +  AS+I G+TPAA+  LL +++
Sbjct: 632 HLSRPQTIGAASRIPGVTPAAIINLLRFVR 661


>gi|331089220|ref|ZP_08338122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405772|gb|EGG85301.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 636

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 382/622 (61%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 15  YDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEVT 134

Query: 125 ---AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
              A    E  I  I  +     ++  C  V+L TGT+L+     G++    G  G   +
Sbjct: 135 DIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQSA 194

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   Q
Sbjct: 195 NYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQIDQ 254

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EP
Sbjct: 255 VSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEP 314

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE 
Sbjct: 315 EGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEF 374

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL +
Sbjct: 375 KNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVT 434

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT +G ++G I E   +R+ K +++   +   
Sbjct: 435 KESREPYRMMTSRAEYRLLLRQDNADQRLTKLGYEIGLISE---ERYEKLLEKERLIEEE 491

Query: 478 LKSL----VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  +    + TS+ + +   +++    T   T  E +  P+ S + L  I  + +     
Sbjct: 492 IHRVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPGD 551

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P +
Sbjct: 552 VAQQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPAS 611

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           + QAS+I G++PA +++LL+Y+
Sbjct: 612 IGQASRISGVSPADVSVLLVYL 633


>gi|148243498|ref|YP_001228655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. RCC307]
 gi|166224334|sp|A5GWP3|MNMG_SYNR3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147851808|emb|CAK29302.1| Glucose inhibited division protein A [Synechococcus sp. RCC307]
          Length = 643

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/621 (42%), Positives = 379/621 (61%), Gaps = 12/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+++IV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFELIVVGGGHAGCEAALTAARLGISTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNTEKNI------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            G  T  +       I+ +     S+     VVLTTGTFL G I +G   +PAGR G+ P
Sbjct: 130 TGLETSGSAESGDLRITGVRTYFGSIYNAQAVVLTTGTFLGGRIWVGNQSMPAGRAGEQP 189

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQ 237
           +  L  +     F T RLKTGTPAR+D +++  +  E+Q +D     FSF  +  +++  
Sbjct: 190 AEGLTEALQALGFATDRLKTGTPARVDRRSVALETLEEQPSDAHERWFSFDPEAWVSSEP 249

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF +++ HQIFLEP
Sbjct: 250 MSCHITRTTAATHQLIKDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFLEP 309

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP Y +EYDY+   +L P+L+T
Sbjct: 310 EGRDTPELYIQGFSTGLPERLQLKLLRTLPGLEQCVMLRPAYNVEYDYLPATQLLPSLQT 369

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K+++GLF AGQ+NGTTGYEEAAAQGLVAG+N+ R       + F R  SYIG +IDDL +
Sbjct: 370 KRVAGLFSAGQLNGTTGYEEAAAQGLVAGLNAVRLIRGQTPVHFPREGSYIGTLIDDLVT 429

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYR+ TSR+EYR+ LR DNAD RLTP+  +LG I  RR + + +  +        
Sbjct: 430 KDLREPYRVLTSRSEYRLVLRGDNADRRLTPLARELGLIDARRWQIYERKQEGIAAETKR 489

Query: 478 LKSLVLTSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           L+++ L   +  + ++  +Q G     + T  + L  P F   +L        +    V 
Sbjct: 490 LETVRLKVSDPVAPAV-VEQTGAAIKGSITLADLLRRPGFHSNDLVRHGLADGELPVDVR 548

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y+ Y  RQ  + + ++ + +RLIP   D+ S+  LS E +E+L+  +P NL 
Sbjct: 549 EGAEIDVKYSGYLARQTQQIERVQRQGQRLIPSGIDFYSITTLSREARERLTAAQPLNLG 608

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS++ G++PA +  LL++++
Sbjct: 609 QASRLPGVSPADVTALLLWLE 629


>gi|157149984|ref|YP_001449347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|189039364|sp|A8AU87|MNMG_STRGC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157074778|gb|ABV09461.1| glucose inhibited division protein A [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 639

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/642 (41%), Positives = 385/642 (59%), Gaps = 33/642 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGRPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N     + FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEELGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIY-------IKKNTVKLNEI 623
           P  + QAS+I G+ PA +++L++Y       I KN  K N +
Sbjct: 598 PETIGQASRISGVNPADISILMVYLEGKARSISKNKEKQNHV 639


>gi|332364139|gb|EGJ41916.1| glucose inhibited division protein A [Streptococcus sanguinis SK49]
          Length = 659

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|206901392|ref|YP_002250834.1| glucose-inhibited division protein A [Dictyoglomus thermophilum
           H-6-12]
 gi|206740495|gb|ACI19553.1| glucose-inhibited division protein A [Dictyoglomus thermophilum
           H-6-12]
          Length = 619

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 374/615 (60%), Gaps = 9/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  AA+LG    LIT    T+G + CNPA+GG GKGHL+ EIDAL
Sbjct: 4   YDVIVVGGGHAGCEAAYAAARLGVKVLLITMNYDTVGWLPCNPAMGGPGKGHLIMEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL GR+ + + IQ ++LN  KGPAVR  R Q D+ +Y   M+  + S +NL+V QGEV 
Sbjct: 64  GGLTGRITNRSMIQVKMLNTSKGPAVRALRAQVDKWVYPAKMREFLESIKNLEVYQGEVV 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +++          VV+T GTF+ GVIHI     PAGRM + PS  L ++
Sbjct: 124 DLIVENDEVKGVILSTKKEFYAERVVITPGTFMNGVIHISTWSKPAGRMNEFPSVGLSDA 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   + GR  TGT  R+D +TI + KT  Q  DE L  FSF  +     Q+   +TRT
Sbjct: 184 LRRLGLEVGRFNTGTTPRVDKRTIDFSKTVIQPGDEELHSFSFWEEPEPRDQVPSYLTRT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +T  I++ NI  +A   G +   GPRYCPSIE+K V F     HQ+FLEPEG N+  +
Sbjct: 244 TQKTKEIVLANIHLTASRIGGMVKKGPRYCPSIEEKYVWFPHHETHQVFLEPEGRNSVEI 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GI T+LPE+IQ Q +R+IPGLE+V +IRPGYAI YD + P +L  TLETKKI GL+L
Sbjct: 304 YVQGIYTSLPEDIQIQILRSIPGLEEVELIRPGYAIAYDIVYPHQLKLTLETKKIKGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG N+A      + +   R + YIGV+IDDL +KGV EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLIAGANAALSLLGKEPLIIRRDEGYIGVLIDDLVTKGVDEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYRI LR DNAD RLTP   KLG I E   K F + +++  + +  L+ L +  
Sbjct: 424 ILTSRAEYRILLRSDNADQRLTPKAYKLGLISEDMWKMFQEKMEKIKYEKRRLEKLSVQP 483

Query: 486 KNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDA---RKFSSLVIERLQIES 540
           +N++   +    +  T+     + +  P+ + ++L  +       +K+  +V    + + 
Sbjct: 484 ENINYILLDKGTNPITQPVPLIQIIKRPEITYEDLEKVGLSGDLPKKWREIV----ETDI 539

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +++ + KE +  E   IP+D +Y  +P LS E +EKL  ++P    QA +I G
Sbjct: 540 KYEGYIKKELDKVKEFQEYENLQIPEDINYGEIPHLSREGREKLEKIRPSTFGQAMRISG 599

Query: 601 MTPAALNLLLIYIKK 615
           +    L +LL Y+++
Sbjct: 600 VNAGDLTILLYYLRE 614


>gi|324989554|gb|EGC21500.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK353]
          Length = 659

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/626 (42%), Positives = 381/626 (60%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT  G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTETGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|118359868|ref|XP_001013172.1| glucose-inhibited division protein A containing protein
           [Tetrahymena thermophila]
 gi|89294939|gb|EAR92927.1| glucose-inhibited division protein A containing protein
           [Tetrahymena thermophila SB210]
          Length = 671

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/641 (44%), Positives = 403/641 (62%), Gaps = 39/641 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGGHAGCEAA  AA+ GA T L+T K  T+G MSCNP++GG+GKG+L+REI
Sbjct: 31  NNKYDVVVIGGGHAGCEAAYAAARTGAKTLLLTQKKQTVGEMSCNPSMGGIGKGNLIREI 90

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQ 121
           DAL GLMGR+AD +GIQ++VLN  KG AV+GPR Q DR+ Y+  MQ  + +Q  NLDV +
Sbjct: 91  DALGGLMGRMADLSGIQYKVLNSSKGAAVQGPRAQIDRDSYKKNMQNFLFNQVPNLDVAE 150

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDS- 177
                   + + + I  +  Q+N  I   +VV+TTGTFLR   HIG  + PAGR + DS 
Sbjct: 151 ASAEDLLLDEKTHSIKGVKTQNNENIYSKSVVITTGTFLRAYCHIGHKRYPAGRHIRDSD 210

Query: 178 ----PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
               PS  L  +  ++ F   R  TGTPAR+D  +I ++  E Q +DE + PFSF+ +  
Sbjct: 211 QVEPPSIGLAKTLERYQFHIARYTTGTPARIDRNSINFEGLETQESDEIITPFSFVHEFY 270

Query: 234 T-----NRQIECGITRTNLETHRIIMENIKHSAIYS-GDIKSYGPRYCPSIEDKIVRFGE 287
           +     N  ++C IT+TN +TH II  N +    ++  D K  GPRYCP+IE K++RF +
Sbjct: 271 SPFIPPNPLVKCYITQTNSKTHDIINSNRQFLPKFTFNDGKGLGPRYCPAIEKKVIRFPD 330

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +  HQ++LEPEG N +++YPNG++TA PEEIQ   +R+I GLE   + RPGYA+EYD++N
Sbjct: 331 KKYHQVWLEPEGYNNNIIYPNGLNTAFPEEIQLDLLRSIKGLENCVMTRPGYAVEYDFVN 390

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+EL  +LET+KI GL+LAGQINGTTGYEEAA+QG++AGIN+ ++    + +   R++++
Sbjct: 391 PQELKKSLETRKIKGLYLAGQINGTTGYEEAASQGIIAGINAGQECQGKEPLILDRSEAF 450

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AK 466
           IGV+IDDL S G+ EPYRMFTSR+E+R+SLR +NAD RLTP G+KLG I + +++ F  K
Sbjct: 451 IGVLIDDLISLGISEPYRMFTSRSEFRLSLRAENADFRLTPYGIKLGIINKEQEEVFRQK 510

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFK-QDGKTRTAYEFLSYPDFSI-------QNL 518
           Y  +   + +L+ +  + S++     I+   Q    ++A + +   D +I        NL
Sbjct: 511 YHMKVKGMHNLM-NFKMLSRDWQKKGINIDPQQPGYKSAADIIEKYDKNIDEISSAFNNL 569

Query: 519 FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
           F I P  +K        L+ E  Y  Y  +Q    KEI   +K L   D     L ++ +
Sbjct: 570 FEIEPQIKK-------HLETECKYRTYLDKQ---TKEILNLQKNLNSIDISEIDLESIKH 619

Query: 579 -ELKEKLSIL---KPFNLLQASKIEGMTPAALNLLLIYIKK 615
              KE++ +L   KP  +  AS+I G+ P  L  +L   KK
Sbjct: 620 TATKEEIELLSNHKPRTIYAASRIPGIRPTTLVQMLYLAKK 660


>gi|317500878|ref|ZP_07959090.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897758|gb|EFV19817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 636

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 382/622 (61%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDAL
Sbjct: 15  YDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEVT 134

Query: 125 ---AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
              A    E  I  I  +     ++  C  V+L TGT+L+     G++    G  G   +
Sbjct: 135 DIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQSA 194

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQ 237
           N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   Q
Sbjct: 195 NYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQIDQ 254

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EP
Sbjct: 255 VSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEP 314

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE 
Sbjct: 315 EGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEF 374

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL +
Sbjct: 375 KNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVT 434

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT +G ++G I E   +R+ K +++   +   
Sbjct: 435 KESREPYRMMTSRAEYRLLLRQDNADQRLTKLGYEIGLISE---ERYEKLLEKERLIEEE 491

Query: 478 LKSL----VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  +    + TS+ + +   +++    T   T  E +  P+ S + L  I  + +     
Sbjct: 492 IHRVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPED 551

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P +
Sbjct: 552 VAQQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPAS 611

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           + QAS+I G++PA +++LL+Y+
Sbjct: 612 IGQASRISGVSPADVSVLLVYL 633


>gi|21911374|ref|NP_665642.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS315]
 gi|28896746|ref|NP_803096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes SSI-1]
 gi|25090459|sp|Q8K5H7|MNMG_STRP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21905590|gb|AAM80445.1| putative glucose inhibited division protein [Streptococcus pyogenes
           MGAS315]
 gi|28812000|dbj|BAC64929.1| putative glucose inhibited division protein [Streptococcus pyogenes
           SSI-1]
          Length = 632

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/619 (43%), Positives = 377/619 (60%), Gaps = 8/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKSELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKFSSLVIERLQ 537
              + + N     + FK      TA EF+  P  D++I   F + P A    + +IE L+
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYAIAVSF-VGPAAEDLDAKIIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+ PA +++L+IY++ N
Sbjct: 607 ISGVNPADISILMIYLEGN 625


>gi|242059989|ref|XP_002459140.1| hypothetical protein SORBIDRAFT_03g046560 [Sorghum bicolor]
 gi|241931115|gb|EES04260.1| hypothetical protein SORBIDRAFT_03g046560 [Sorghum bicolor]
          Length = 713

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/622 (43%), Positives = 379/622 (60%), Gaps = 18/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+DAL
Sbjct: 66  YDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDAL 125

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---DVIQG 122
            G +G++ D   +Q RVLN  KGPAVR  R Q D+  Y + M+  + S ENL   + +  
Sbjct: 126 GGEIGKITDRCYLQKRVLNSSKGPAVRALRAQTDKREYAIEMKNVVESTENLFIREAMAT 185

Query: 123 EVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           EV  G N     + +    D       +VVLTTGTF+ G I +G+  +PAGR G+S S+ 
Sbjct: 186 EVLIGKNDSVEGVRTFFGMD---FYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHG 242

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +     F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  +   Q+ C
Sbjct: 243 LTENLQLLGFETDRLKTGTPPRIDRRTVDFSGLEPQHGDEEVGWFSFDPEFHVEREQMCC 302

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH+I+++N++ +  Y G +++ GPRYCP+IEDK VRF ++  HQIFLEPEG 
Sbjct: 303 YLTRTTKETHQIVIDNLEETPTYGGWVEAKGPRYCPAIEDKTVRFKDKESHQIFLEPEGR 362

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +Y  G ST LPE +Q   +RTIPGLE   ++RP YA+EYDY+   +   +L TKK 
Sbjct: 363 NVPELYLQGFSTGLPERLQLSLVRTIPGLENCLMLRPAYAVEYDYLPAYQCSRSLMTKKF 422

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQG+V+GIN+AR S+    I   R  SYIG +IDDL +K +
Sbjct: 423 EGLFFSGQINGTTGYEEAAAQGIVSGINAARHSDGKSLIILERESSYIGTLIDDLVTKDL 482

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRS 476
            EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR    Q + A+  QE    + 
Sbjct: 483 REPYRMLTSRSEHRLLLRADNADSRLTPLGREIGLIDDRRWELYQSKQARIKQE----KE 538

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            LKS  +     ++  T++S +      T    L  P    + L          S +  E
Sbjct: 539 RLKSTKVPGGEFAAEVTAVSNQPVKDLSTLEAILKKPHVQYKLLDKHGCGNENLSRIEKE 598

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I+  Y  +  RQ  +  +I  +E R +P+D DY S+  LS E +EKLS ++P  + Q
Sbjct: 599 CVEIDIKYEGFIARQQSQLHQIVNQEHRKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQ 658

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G++PA + +LLI+++ N
Sbjct: 659 ASRIGGVSPADMTVLLIWMESN 680


>gi|294792404|ref|ZP_06757551.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 6_1_27]
 gi|294456303|gb|EFG24666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 6_1_27]
          Length = 623

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/620 (42%), Positives = 385/620 (62%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNLENMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKNIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLV---KDDRWAKFTAKKAAIEEAMDMLRNT 482

Query: 485 SKNLSSTSISFKQDGKT---RT---AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  + +  +   T   RT   AY+ +   + S    ++I  DA   ++++S V E 
Sbjct: 483 PVNPSKETQALLESLGTAPIRTGIHAYDLVKRNELS----YTIVADAFGLKRYTSDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 VDISITYEGYIKKQMEQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|302393073|ref|YP_003828893.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
 gi|302205150|gb|ADL13828.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
          Length = 631

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 385/622 (61%), Gaps = 15/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAGCEAA  AA+L   T ++T     +  M CNPA+GG  K  +VREID
Sbjct: 2   KNYDIIVVGTGHAGCEAALAAARLDCKTLVLTVDLDNVALMPCNPAVGGPAKSQMVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G + +  D + IQ R LN  KGPAV+  R Q D++ Y L M++ +  ++NL++ QG 
Sbjct: 62  ALGGEIAKNLDRSFIQLRRLNTGKGPAVQALRAQVDKKDYSLNMKQVLEEEDNLELRQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  + ++         V+LTTGTFL+G I IG     +G     P+N+L 
Sbjct: 122 VTELLIENDKVEGVKLKTGIEFYSQKVILTTGTFLKGSIIIGDYSFNSGPHNQFPANALS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECG 241
           N+  +  F+  R KTGTP R+D +T+ + K E+Q   +  + FSF  +       QI C 
Sbjct: 182 NNLEELGFEIRRFKTGTPPRIDKRTVDFSKLEEQPGIDEDVSFSFADIASAEQKDQISCW 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I ENI  S +Y G I+  GPRYCPSIEDK+++F ++  HQ+FLEPEG  
Sbjct: 242 LTETNQETHQLIRENIDRSPLYGGVIEGQGPRYCPSIEDKVMQFPDKKSHQLFLEPEGEY 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +Y  G ST+LPE++Q + + T+PG E+  I+RPGYAIEYD INP +L PTLETK I+
Sbjct: 302 IYEMYLAGFSTSLPEDVQIEMLHTLPGFEEAEIMRPGYAIEYDCINPLQLKPTLETKLIT 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAA QGL+AGIN+ ++    + +   R+++YIGV+IDDL ++G  
Sbjct: 362 GLYTAGQINGTSGYEEAAGQGLMAGINAVQRLKGEEPVILLRSEAYIGVLIDDLVTQGTQ 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLTP+G +LG I E R + F    +     +  LK +
Sbjct: 422 EPYRMLTSRAEYRLLLRHDNADLRLTPLGYELGLISEDRYRDFIDKKEAIEAEKKRLKEV 481

Query: 482 VL--------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L        T K L ST I+        T    L  P+   ++L ++  D  + SS V 
Sbjct: 482 KLHPDDDVQATLKELGSTGIN-----NVDTLARLLRRPELDYESLAALDSDRPELSSEVK 536

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++I+  Y  Y  RQ+ + +  +  + + IP+D DYS +  LS+E  EKL  ++P ++ 
Sbjct: 537 EEVEIQLKYEGYINRQLKQVENQQELDGQKIPQDIDYSEISGLSDESLEKLDKIRPMSVG 596

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA++I G+ PA ++LL +Y++K
Sbjct: 597 QAARISGVKPADISLLTVYLEK 618


>gi|327467650|gb|EGF13147.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK330]
          Length = 635

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 68  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 125 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 178 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 238 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 298 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 358 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 418 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 477

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 478 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 598 PETIGQASRISGVNPADISILMVYLE 623


>gi|171686660|ref|XP_001908271.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943291|emb|CAP68944.1| unnamed protein product [Podospora anserina S mat+]
          Length = 691

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/645 (43%), Positives = 396/645 (61%), Gaps = 39/645 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EA+A AA+ GA TAL+T     +G  SCNP+ GG+GKG ++REIDAL
Sbjct: 2   FDVIVVGGGHAGAEASAAAARAGARTALVTPSLENLGVCSCNPSFGGIGKGTILREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
           DGL GR+ D AG+QFRVLN +KGPAV GPR Q DR LY+  M+ E+ + ++L+V+ G+V 
Sbjct: 62  DGLAGRIIDKAGLQFRVLNRRKGPAVWGPRAQIDRALYKKHMKEELTNYKDLEVVTGKVE 121

Query: 125 ------AGFNTE------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                 AG   E      ++ I+ + ++   ++   +VV+TTGTFL G IHIG    P+G
Sbjct: 122 DIIVSDAGLTEEERAEGARSKITGVRLESGEVLPARSVVITTGTFLGGEIHIGLEAYPSG 181

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  +  L  S  +  F  GRLKTGTP RL   +I WD  E+Q  D+  +PFS++ DK
Sbjct: 182 RMGEEATFGLSKSLREAGFKLGRLKTGTPPRLAKGSINWDILEEQLGDDPPMPFSYLNDK 241

Query: 233 IT--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +     Q++C  T TN  TH I+  N+  +      +K  GPRYCPS+E KI+RFG ++ 
Sbjct: 242 VDVDGHQLKCHATYTNHSTHDIVRANLDRTIHIRETVK--GPRYCPSLESKIIRFGHKDS 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEG + +V+YPNG+S  +P + Q   +RTI GLE V +++PGY +EYDY++P+ 
Sbjct: 300 HIVWLEPEGFDNEVIYPNGLSMTIPADAQEALLRTIRGLENVTMLQPGYGVEYDYVDPRS 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR D+YIG+
Sbjct: 360 LKRTLETKHISGLFLAGQINGTTGYEEAAGQGVIAGINAGRTALNLPSVSLSRFDAYIGI 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL +KGV EPYRMFTSR+E+R+  R DNAD RLTP+G   G I   R + + +    
Sbjct: 420 MIDDLVTKGVSEPYRMFTSRSEFRLRTRSDNADVRLTPLGHSWGVISPSRWESYLETSSS 479

Query: 471 YNFLRSLLKSLVLTSKNLSST-----------SISFKQDGKTRTAYEFLSYPDFSIQN-- 517
              L SLL+S +L S   ++T            +        R  YE  +  + S  +  
Sbjct: 480 STALYSLLESTILPSPQWTTTHPLPQTNSDINGVKVSGIQMLRKIYEHATTTNLSSSSSP 539

Query: 518 ---------LFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
                    L    P   +F     ER+ IE+ Y  +   Q+ EA     +E  L+P D 
Sbjct: 540 PPLSSSVSALEPTLPAVGEFPPKTQERVAIEAVYEPFVKFQLAEAARAVRDEHLLLPTDL 599

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           DY+++  LS   + KL+  +P ++ QA ++EG+TP  + +LL ++
Sbjct: 600 DYTTVTGLSIAEQTKLNETRPESIGQARRVEGVTPNGVVMLLRHV 644


>gi|218247682|ref|YP_002373053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 8801]
 gi|257060981|ref|YP_003138869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 8802]
 gi|218168160|gb|ACK66897.1| glucose inhibited division protein A [Cyanothece sp. PCC 8801]
 gi|256591147|gb|ACV02034.1| glucose inhibited division protein A [Cyanothece sp. PCC 8802]
          Length = 631

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/615 (43%), Positives = 369/615 (60%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAGCEAA  +A+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 8   QFDVIVVGAGHAGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +   
Sbjct: 68  LGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAIMKEIVENQDNLSIREAMA 127

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +     +      V+LTTGTFL G I IG   + AGR G+  S  L 
Sbjct: 128 TDLILGKNEEVIGVQTYFGTCFGAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFASVGLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
            +  +  F+ GRLKTGTPAR+D +++ +   E Q  D+ +  FSF  D    R Q+ C I
Sbjct: 188 ETLNRLGFEVGRLKTGTPARVDKRSVDYSNLETQPPDDEIRWFSFDPDAWIEREQMNCYI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF +++ HQIF+EPEG   
Sbjct: 248 TRTTSQTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFIEPEGREI 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYDY+   + +PTL TKKI G
Sbjct: 308 PELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKKIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+ R   K + I F+R +SY+G +IDDL +K + E
Sbjct: 368 LFCAGQINGTTGYEEAAAQGIVAGINAVRFVKKQEMIIFAREESYLGTLIDDLCTKDLRE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F          +  L    
Sbjct: 428 PYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLFQDKQANIIAEKERLHETR 487

Query: 483 LTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +  K+  + +I    + K +   T  + L  P F   +L        + +S+  E  +I+
Sbjct: 488 IKEKDEVAITIVNDTNQKIKGSITLADLLRRPQFHYIDLERYGLGNAQLNSVEKEGAEID 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y  RQ  +  +I  +  R +P+D +Y  +  LS E +EKL+ +KP  L QAS+I 
Sbjct: 548 IKYSGYLKRQQNQIDQISRQSNRQLPEDLNYMKIETLSMEAREKLNKIKPLTLGQASRIG 607

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +N LL+Y++
Sbjct: 608 GVNPADINALLVYLE 622


>gi|41058568|gb|AAR99267.1| glucose-inhibited division protein A [Candidatus Blochmannia
           vicinus]
          Length = 593

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/592 (47%), Positives = 375/592 (63%), Gaps = 25/592 (4%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPAIGG+GKGHLV+EID++ G M    D AGIQFR+LN  KG AVRG R QAD
Sbjct: 2   TLGQMSCNPAIGGIGKGHLVKEIDSMGGAMACAIDNAGIQFRILNRSKGAAVRGTRAQAD 61

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFL 158
           + LYR  ++  +  QE+L +IQ  V      KN I  + +    M I  ++VVLTTGTFL
Sbjct: 62  KILYRQIIRNTLEYQESLLIIQASVEDLIINKNKIVGVFIPKIGMKISATSVVLTTGTFL 121

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GD  S+S+ +  +K F    GRLKTGT  R+  K I +D  E Q
Sbjct: 122 NGKIHIGMNNFRGGRAGDVESSSVLSKRLKEFSLRVGRLKTGTSPRVHSKGINFDALEAQ 181

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D  +  FSF+ ++K   +Q+ C IT TN +TH II  N+  S I++G I+   PRYCP
Sbjct: 182 YSDSPVPIFSFIGSEKQHPKQVPCYITYTNDKTHEIIRSNLNQSPIHAGLIEGISPRYCP 241

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +RN HQIFLEPEGL T  +Y NGIST+LP  +Q Q I++I GLE  +IIR
Sbjct: 242 SIEDKITRFSDRNAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIKSIQGLENAHIIR 301

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 302 PGYAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 361

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG +
Sbjct: 362 EGWYPRRDQAYLGVLVDDLCTYGTKEPYRMFTSRAEYRLSLREDNADLRLTAIARQLGLV 421

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLTS--------KNLSSTSISFKQDGKTRTAYEFL 508
            E R K F    +     R  L+++ +           N   T ++++ +G+     E L
Sbjct: 422 DELRWKNFCLKKESIEKERQRLRNVYIFPYSTDAKQLNNFLKTPLTYEVNGE-----ELL 476

Query: 509 SYPDFSIQNLFSICPDARKFSSL-----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
             P+ +   L  +    R FSS      V E+++I+  Y  Y   Q  E +     E  L
Sbjct: 477 RRPEVNYVTLSKL----RVFSSFVSDRQVFEQIEIQIKYEGYIRHQQKEIERRICNEHIL 532

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P D D++ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 533 LPTDIDFNVVSGLSKEVIDKLNDYKPYSVGQASRISGVTPAAISNLLVWLKK 584


>gi|325689330|gb|EGD31336.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK115]
          Length = 659

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 381/626 (60%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N     + FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEELGFKSLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|282897503|ref|ZP_06305504.1| Glucose-inhibited division protein A subfamily [Raphidiopsis
           brookii D9]
 gi|281197598|gb|EFA72493.1| Glucose-inhibited division protein A subfamily [Raphidiopsis
           brookii D9]
          Length = 642

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/625 (43%), Positives = 370/625 (59%), Gaps = 25/625 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 18  AYDVIVVGAGHAGCEAALAVARLGCPTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +G V
Sbjct: 78  LGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYAAVMKGIVENQENLTIREGMV 137

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  I  +         C  V+LTTGTFL G I +G   + AGR G+  +  L 
Sbjct: 138 TDLVLGKNDEIIGVETYFGVAFACKAVILTTGTFLGGRIWVGNKSMEAGRAGEFAAVGLT 197

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF     +   QI C +
Sbjct: 198 ATLNRLGFETGRLKTGTPARVDKRSVDYSKMEIQPGDEEVRWFSFDPQVWLEKEQIPCYM 257

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 258 TRTTPETHRLIQENLGLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDI 317

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLEK  ++RP YA+EYDY+   + +P+L TKKI G
Sbjct: 318 PELYIQGFSTGLPETLQILMLRSLPGLEKCVMLRPAYAVEYDYLPATQCYPSLMTKKIQG 377

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGLVAGIN+ +     + + F R  SYIG +IDDL +K + E
Sbjct: 378 LFCAGQINGTTGYEEAAAQGLVAGINAVQFVQGREMVIFPREQSYIGTLIDDLCTKDLRE 437

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD R+TP+G  +G I +RR   F +  QE+         ++
Sbjct: 438 PYRMLTSRSEYRLLLRSDNADQRMTPLGRAIGLIDDRRWNLFTRK-QEH---------II 487

Query: 483 LTSKNLSSTSISFKQD-GKTRTAY------------EFLSYPDFSIQNLFSICPDARKFS 529
              + L ST I   +D G+  T +            + L  P+    +L           
Sbjct: 488 GEKERLHSTRIKEHEDIGRLITQHTQQVIKGSITLVDLLRRPEIHYLDLERYGLGNPHLH 547

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           +   E  +I+  Y+ Y  RQ  +  +I  +  R +P + DY S+  LS E +EKL+ +KP
Sbjct: 548 AAEKEGAEIDIKYSGYLARQQNQIDQIARQANRHLPPNLDYDSITTLSKEAREKLTTVKP 607

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             + QAS+I G+ PA +N LLIY++
Sbjct: 608 LTIGQASRIGGVNPADINALLIYLE 632


>gi|290581400|ref|YP_003485792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mutans NN2025]
 gi|254998299|dbj|BAH88900.1| glucose inhibited division protein homolog [Streptococcus mutans
           NN2025]
          Length = 631

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 380/619 (61%), Gaps = 12/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDVIVIGAGHAGVEASLATSRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D + IQ R+LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKSYIQMRMLNTGKGPAVRALRAQADKALYARNMKHTVEQQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       V++TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DEILVEDGKVIGVRTATNQKYSAQAVIVTTGTALRGEIILGELKYSSGPNNSLASITLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +      + GR KTGTP R+   +I +D+TE Q  D++   FSFM+  +     QI C +
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKANSIHYDETEIQPGDKKPNHFSFMSKDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ+FLEPEG  T
Sbjct: 248 TYTNQSSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKDVVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF     ++  E   L S+ 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEIGHQVGLVNEERYMRFQIRKNQFDNELTRLSSIK 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIER 535
           LK +   +K +    + FK      TA EF+  P+  ++I   F + P A      VIE 
Sbjct: 488 LKPVAEINKRIE--ELGFKPLTDALTAKEFMRRPEINYAIATSF-VGPAAESLDEKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +++L++Y++
Sbjct: 605 SRISGVNPADISILMVYLE 623


>gi|296875548|ref|ZP_06899620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433472|gb|EFH19247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis ATCC 15912]
          Length = 636

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 377/615 (61%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q  + 
Sbjct: 69  GGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVENGKVVGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE ++ E
Sbjct: 489 KPVKETNEKVATMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|158335338|ref|YP_001516510.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acaryochloris marina MBIC11017]
 gi|189039326|sp|B0BZY6|MNMG_ACAM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158305579|gb|ABW27196.1| glucose-inhibited dvision protein A [Acaryochloris marina
           MBIC11017]
          Length = 635

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/624 (42%), Positives = 380/624 (60%), Gaps = 25/624 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+G GHAGCEAA  +A++G ST L+T     I    CNPA+G   K  L  E+DAL
Sbjct: 13  FEVIVVGAGHAGCEAALASARMGCSTLLLTLNLDKIAWQPCNPAVGAPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q NL V +G   
Sbjct: 73  GGEIGKMADRTYLQKRLLNHSRGPAVWALRAQTDKREYAAVMKTIVENQGNLTVREG--- 129

Query: 126 GFNTEKNIISSIVMQDNSMI-----------RCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                  +++ +V+ DN  +           RC  V+LTTGTFL G I +G   +PAGR 
Sbjct: 130 -------MVTDLVLGDNDEVVGVQTYFGVAFRCQAVILTTGTFLGGRIWVGDKSMPAGRA 182

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKI 233
           G+  +  L  +  +  F+TGRLKTGTPAR+D ++  +   E Q  D+++  FSF     I
Sbjct: 183 GEFAAEGLTETLNQLGFETGRLKTGTPARVDKRSADFSVMEPQPPDQQVRWFSFDPAVWI 242

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C ITRT  ETH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQI
Sbjct: 243 EREQMNCYITRTTPETHQLIQDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKASHQI 302

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           F+EPEG +   +Y  G ST LPE +Q + +R++PGLE   ++RP YA+EYDY+   + +P
Sbjct: 303 FIEPEGRDIPELYIQGFSTGLPEALQLRMLRSLPGLEHCAMLRPAYAVEYDYLPATQCYP 362

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL TK+I GLF AGQINGTTGYEEAAAQG+VAGIN+AR+ N+ + + F R +SYIG +ID
Sbjct: 363 TLMTKRIEGLFCAGQINGTTGYEEAAAQGIVAGINAARRVNQQEMLIFPRAESYIGTLID 422

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +K + EPYRM T R+EYR+ LR DNAD RLTP+G ++G I +RR   F +       
Sbjct: 423 DLCTKDLREPYRMLTGRSEYRLLLRSDNADQRLTPLGREVGLIDDRRWHLFTRKQATITA 482

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSS 530
            +  L +  L  ++ ++ +I      K +   T  + L  P F   +L            
Sbjct: 483 EKERLHATRLKERDPAAQAIVQTTGEKIKGSITLSDLLRRPKFHYCDLQQHGLGIETLER 542

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E ++IE  YA Y  RQ  + +++  +E+R +P++ DY+S+  LS E +EKL+ ++P 
Sbjct: 543 SERESVEIEIKYAGYIQRQQRQIEQVSRQEQRKLPENIDYASIETLSMEAREKLAKVRPL 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
            + QAS+I G+ P+ +N LL Y++
Sbjct: 603 TVGQASRIGGVNPSDINALLFYLE 626


>gi|327471583|gb|EGF17026.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK408]
          Length = 659

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|319760151|ref|YP_004124089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038865|gb|ADV33415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 636

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/618 (44%), Positives = 386/618 (62%), Gaps = 21/618 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  A++L   T LITH   T+G MSCNP+IGG+GKGHLV+EIDA
Sbjct: 6   NFDVIVVGGGHAGTEAALAASQLKCHTLLITHNIDTLGQMSCNPSIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M    D +GIQFR+LN  KG AV+  R QAD+ LY+  +++ +  Q  L ++Q  V
Sbjct: 66  MGGIMANAIDRSGIQFRILNSSKGAAVKSTRAQADKILYKQIIRQSLEDQSYLYILQASV 125

Query: 125 AGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  N +  +++ +  M I   +V+LTTGTFL G I+IG      GR GD  S+SL 
Sbjct: 126 EDVIIRHNKVMGVIIPNIEMKIFARSVILTTGTFLNGKIYIGMNNFEGGRAGDLESSSLL 185

Query: 184 NS-FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
           +    +      RLKTGT  R+  K + ++   +Q +D  +  FSF+ + K   +QI C 
Sbjct: 186 SRRLQELSLKVNRLKTGTSPRIYAKGVNFECMVEQHSDCPIPVFSFIGSSKQHPKQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N+ HS +Y+G I    PRYCPSIEDK++RF +++ HQIFLEPEGL 
Sbjct: 246 ITHTNSKTHDIIRSNLHHSPVYAGLINGIPPRYCPSIEDKVIRFPDKDTHQIFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG++T+LP  +Q Q I++I GLE   I+RPGYAIEYD+ NP +L  TLE+K IS
Sbjct: 306 TSEIYLNGVATSLPFNVQIQIIQSIKGLENARILRPGYAIEYDFFNPIDLKLTLESKFIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFL+GQINGTTGYEEAAAQGL++GIN+AR +         R  SY+GV++DDL + G  
Sbjct: 366 GLFLSGQINGTTGYEEAAAQGLLSGINAARYAQNKTEWYPKRDQSYLGVLVDDLCTHGTT 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-- 479
           EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I + R + F   +++ N  R   +  
Sbjct: 426 EPYRMFTSRAEYRLSLREDNADLRLTDIARQLGLITDNRWRIFC--VKQENIEREFQRFR 483

Query: 480 --------SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSS 530
                   + ++   ++    +  K +G+       ++Y   S  + F  +  D +    
Sbjct: 484 NTYIFPNTTDIIKLNSILKVPLMNKVNGEDLLKRPEINYATLSQLSTFKPVISDNQ---- 539

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++I+  YA Y  RQ  E       E  L+P D +Y+++  LS E+ EKL+  +P+
Sbjct: 540 -VYEQIEIQIKYAGYLNRQKEEIDRNLRNEDTLLPFDINYNNIVGLSTEVVEKLNYCRPY 598

Query: 591 NLLQASKIEGMTPAALNL 608
           ++ QAS+I G+TP A+++
Sbjct: 599 SVGQASRISGITPVAISI 616


>gi|225871460|ref|YP_002747407.1| glucose inhibited division protein A [Streptococcus equi subsp.
           equi 4047]
 gi|225700864|emb|CAW95609.1| glucose inhibited division protein A [Streptococcus equi subsp.
           equi 4047]
          Length = 632

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 376/619 (60%), Gaps = 8/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGVEASLAASRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           V++TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVENGRVVGVLTATGQKYAAQAVIITTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +  K   + GR KTGTP R+   +I ++ TE Q  D     FSFM+   D + N QI C 
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSIDYEVTEIQPGDVTPNHFSFMSKDKDYLAN-QIPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +
Sbjct: 247 LTYTNQISHDIITKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGFD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK IS
Sbjct: 307 TEEVYVQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKMIS 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--L 478
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F  K  Q  N L+ L  +
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDDERWSAFEIKKNQFDNELKRLDSI 486

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQ 537
           K   +   N     + FK      TA EF+  P+     + S I P A    + +IE L+
Sbjct: 487 KLKPIKETNARVQKLGFKSLTDAMTAKEFMRRPEVDYATVVSFIGPAAEGLDAKLIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IPK  D+ ++ +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYIKKALDQVAKMKRMEEKRIPKTIDWDAIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+ PA +++L++Y++ N
Sbjct: 607 ISGVNPADISILMVYLEGN 625


>gi|158285249|ref|XP_308209.4| AGAP007661-PA [Anopheles gambiae str. PEST]
 gi|157019900|gb|EAA04633.4| AGAP007661-PA [Anopheles gambiae str. PEST]
          Length = 666

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/626 (42%), Positives = 408/626 (65%), Gaps = 17/626 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EA + AA++GA T L+T K STIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 37  SFDVIVVGGGHAGTEACSAAARMGARTLLVTQKRSTIGEMSCNPSFGGIGKGHLIREVDA 96

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+  R  D +G+Q++VLN +KGPAV GPR Q DR+LY+  +Q+ + +  NL +++  V
Sbjct: 97  LDGVCARCCDRSGVQYKVLNRRKGPAVWGPRAQIDRKLYKREVQQTLENTPNLTIVEASV 156

Query: 125 AGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                  ++E+  ++ + + D   +   ++V+TTGTFLRG I+IG    PAGR+GD P+ 
Sbjct: 157 EDIVLSEDSEQPRLAGVKLADGRTMTADSLVITTGTFLRGQINIGLETRPAGRIGDEPAI 216

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237
            L  S  +  F  GRLKTGTP R+   +I +++  +   D+  +PFSF+ D++    ++Q
Sbjct: 217 GLAKSIEELGFRLGRLKTGTPPRIHRDSIRFEQLARHPGDDPPVPFSFLNDRVWLEAHQQ 276

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           ++C +T+T  + + I++ N+  +   + ++   GPRYCPSIE KI+RFG +  HQI+LEP
Sbjct: 277 LDCFLTQTTAQVNDIVLRNLHCNRHVTEELT--GPRYCPSIESKILRFGHKL-HQIWLEP 333

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +++++YPNG+S  LP + Q Q +R + GLE+  ++RPGY +EYD+++P+EL PTLET
Sbjct: 334 EGFDSELIYPNGLSCTLPADEQVQLVRCLEGLEQAEVVRPGYGVEYDFVDPRELLPTLET 393

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLFLAGQINGTTGYEEAAAQGL+AG N+A  +     +  SRT++Y+GV++DDLT+
Sbjct: 394 KRVRGLFLAGQINGTTGYEEAAAQGLLAGANAAASALARPPLTVSRTEAYLGVLVDDLTT 453

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE+R+SLRPDNAD RLT  G  +G +   R +R     Q       L
Sbjct: 454 LGTNEPYRMFTSRAEFRLSLRPDNADLRLTEKGYAMGLVSRERFERTRSIRQRLANASEL 513

Query: 478 LKSLVLTSKNL-SSTSISFKQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKF---SSL 531
           L+ +   S    ++  +   +    ++A+E L  S  + + + + ++ P    +      
Sbjct: 514 LRDVKRGSNQWRAAMQLPLAKASVYKSAFEMLAISNDEITTERVCAVEPTVLGWIRDDRE 573

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPF 590
           + +RL+IE+ Y+     Q  E +E+   E   IP   DY S    LS E +EKL  ++P 
Sbjct: 574 LCQRLKIEALYSLSIEDQSREVEEVLRNESLRIPDAIDYLSKSLNLSFEEQEKLVKIQPQ 633

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
            +  AS+I+G+TP+++  L+ ++K++
Sbjct: 634 TIAAASRIQGITPSSIVRLVKFVKQH 659


>gi|71904532|ref|YP_281335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS6180]
 gi|123639044|sp|Q48QN0|MNMG_STRPM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71803627|gb|AAX72980.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS6180]
          Length = 632

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 375/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+   +    QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDAEYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              + + N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|124004897|ref|ZP_01689740.1| glucose-inhibited division protein A [Microscilla marina ATCC
           23134]
 gi|123989575|gb|EAY29121.1| glucose-inhibited division protein A [Microscilla marina ATCC
           23134]
          Length = 620

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/628 (43%), Positives = 387/628 (61%), Gaps = 30/628 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA+ AA LG+   LIT   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVVGGGHAGCEAASAAANLGSKVLLITMDMNKIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G+ G V D   IQFR+LN  KG A+  PR Q+DR    E +R+ +++ +    N+D  Q
Sbjct: 65  GGMSGIVTDKTMIQFRMLNRSKGAAMWSPRCQSDRMRFAEEWRITLEQNL----NVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G   + N +S +V      +  ++V+LT+GTF+ G+IHIG+ +   GR G+  S  
Sbjct: 121 DMVVGMVVKDNQVSGVVTSMGLEVLSNSVILTSGTFMNGLIHIGEKQFGGGRAGERASKG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +    ++  F+ GR+KTGTP R+D ++I ++  E+Q  D     FS+        Q  C 
Sbjct: 181 ITEQLVQLGFEAGRMKTGTPPRVDARSINYEVMEEQAGDVDPGKFSYTDTPKLKEQRSCH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN + H I+ +    S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG N
Sbjct: 241 ITYTNKKVHAILEKGFDKSPMFAGRIKGIGPRYCPSIEDKINRFAERERHQIFVEPEGWN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NG ST+LPEE+Q++ + +I G E   + RPGYAIEYDY  P +L  TLETK + 
Sbjct: 301 TVEVYVNGFSTSLPEEVQYEALHSIVGFENAKMFRPGYAIEYDYFPPTQLKMTLETKLVE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA QG++AGIN+  K  + +    SR+++YIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAACQGMMAGINAHLKVKEENPFILSRSEAYIGVLIDDLINKGTD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR--------------FAKY 467
           EPYRMFTSRAEYRI LR DNAD RLT    KLG   E+R +R               AK 
Sbjct: 421 EPYRMFTSRAEYRILLRQDNADLRLTEKSYKLGLASEKRMQRVREKRGQIKQMSEELAKI 480

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
             + N + + L++L   S    S  I+  +  +   ++E L   + S+    +      +
Sbjct: 481 KYKPNEINNHLETLGTASIKEKSALINLVK--RPEVSFEKLRSLEGSVAEFLN------Q 532

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           F   V+E+++I + YA+Y  ++   A+++   E   IP  FDY +L A+S+E +EKL  +
Sbjct: 533 FDHEVVEQVEILTKYASYIDKEEKMAQKLYELEGFRIPVSFDYDNLKAISSEGREKLKTI 592

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  + QAS+I G++P+ +++L++Y+ +
Sbjct: 593 RPDTIGQASRISGVSPSDISILMVYLGR 620


>gi|25012136|ref|NP_736531.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae NEM316]
 gi|77408891|ref|ZP_00785616.1| glucose inhibited division protein A [Streptococcus agalactiae
           COH1]
 gi|77413195|ref|ZP_00789393.1| glucose inhibited division protein A [Streptococcus agalactiae 515]
 gi|61224541|sp|P0A3F0|MNMG_STRA3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|61224542|sp|P0A3F1|MNMG_STRA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24413680|emb|CAD47760.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160735|gb|EAO71848.1| glucose inhibited division protein A [Streptococcus agalactiae 515]
 gi|77172482|gb|EAO75626.1| glucose inhibited division protein A [Streptococcus agalactiae
           COH1]
          Length = 633

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/620 (44%), Positives = 381/620 (61%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N      +VV+TTGT LRG I +G LK  +G      S +L +
Sbjct: 128 DEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C 
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  
Sbjct: 247 LTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRY 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R    +KR  ++  E   L S+
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSI 486

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIE 534
            LK +  T+K +    + FK      TA EF+  P   +++   F  C D     S VIE
Sbjct: 487 KLKPVSETNKRIQ--ELGFKPLTDALTAKEFMRRPQITYAVATDFVGCAD-EPLDSKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L Q
Sbjct: 544 LLETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|295103709|emb|CBL01253.1| glucose-inhibited division protein A [Faecalibacterium prausnitzii
           SL3/3]
          Length = 624

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/621 (43%), Positives = 374/621 (60%), Gaps = 10/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DAL
Sbjct: 7   YDVIVIGAGHAGIEAAHAAAVLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  +     L + Q EV 
Sbjct: 67  GGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRRRYNEYMKHALEQTPGLAIHQAEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q +       VVL TGT L G I +G     +G  G   +N+L +S
Sbjct: 127 ALEVENGHVKGVVTQLHGEYTAKCVVLATGTNLGGKIFVGDAWYASGPDGMHAANALTDS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGIT 243
                    R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I 
Sbjct: 187 LKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPMHNKVECWIA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H +F+EP G NT+
Sbjct: 247 YTNPETHKIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFSGKDRHPLFVEPCGENTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LPE++Q+ F  +I G E + I+RP YAIEYD ++P  L  TLE+K + GL
Sbjct: 307 EMYLQGASSSLPEDVQNAFYHSIKGFEHLEIMRPAYAIEYDCVDPTSLEATLESKVVRGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AG+N+AR +  L+ +   R  SY+G ++DDL +KGV++P
Sbjct: 367 YGAGQFNGTSGYEEAAAQGLLAGLNAARNALGLEQLVLPRHTSYLGTLVDDLVTKGVMDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR++LR DNAD RLTPIG + G +   +  R+AKY      L +  + L  
Sbjct: 427 YRMMTSRSEYRLTLRQDNADQRLTPIGREYGLV---QDDRWAKYQHTQQILEAERRRLHE 483

Query: 484 TSKNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T    +    + +  G     +   A E L  P+ S   +  I     + + ++ ERL+ 
Sbjct: 484 THLRTADLRAAMEAAGLAPAAEGGIAEELLRRPEISYPLVAGIIGWGEEITPMLAERLET 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ    +E+   EK LIP+DF+Y++L  L+ E +EKL+ ++P NL QA +I
Sbjct: 544 EIKYAGYIARQDRMIREVARHEKTLIPEDFEYAALTGLTLEAREKLARIRPRNLGQAGRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++P+ +  L I +     K
Sbjct: 604 PGVSPSDVAQLSIALAGKQQK 624


>gi|259048140|ref|ZP_05738541.1| glucose-inhibited division protein A [Granulicatella adiacens ATCC
           49175]
 gi|259035201|gb|EEW36456.1| glucose-inhibited division protein A [Granulicatella adiacens ATCC
           49175]
          Length = 641

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/619 (42%), Positives = 373/619 (60%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAG EAA  +A++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 18  NYDVVVVGAGHAGSEAALASARMGAKTLLLTMNLEMVAFMPCNPSVGGPAKGVVVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY   M++ I  QENLD+ QG  
Sbjct: 78  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHLYAQEMKKTIEKQENLDLRQGIA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++ R   VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 138 EELIVEDGVCKGVITNTGAIYRSKAVVLTAGTSSRGQIIIGELKYSSGANNSQPSIKLSE 197

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           + ++  F+  R KTGTP R+ G +I + KTE Q  D+    FSF +     R  QI C +
Sbjct: 198 NLLELGFELARFKTGTPPRIKGSSIDYSKTEIQPGDDTPNLFSFTSKDEDYRYDQIPCWL 257

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEG NT
Sbjct: 258 TYTNEQTHETIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFLEPEGENT 317

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + IR++ GLE   ++R GYAIEYD + P +L  T ETK +  
Sbjct: 318 EEVYIQGLSTSLPEDVQIKMIRSVEGLENAEMMRTGYAIEYDVVVPHQLKNTFETKLVQN 377

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QGL AGIN+ RK    +     R+D+YIGV++DDL +KG  E
Sbjct: 378 LFTAGQMNGTSGYEEAAGQGLYAGINAVRKIRGEEPFILGRSDAYIGVLVDDLVTKGTTE 437

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    +        ++S+ 
Sbjct: 438 PYRLLTSRAEYRLLLRHDNADLRLTEKGRELGLIDDDRYAEFQAKQEAIEAEIKRMQSIR 497

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L         ++ K   + +      + L  P+ S   L     +A + S  V E+++I 
Sbjct: 498 LKPTTELQAFLAEKGSAELKDGILLSDLLKRPELSYDELVGFAGEAVEVSREVKEQVEIS 557

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP + DY ++  L+ E +++L +++P  + QAS+I 
Sbjct: 558 IKYEGYIAKAIEKVEKLKRMEAKRIPANIDYDAINGLATEARQRLKLIQPETIAQASRIS 617

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++L++YI++  +
Sbjct: 618 GVNPADVSILMVYIEQGKI 636


>gi|114608197|ref|XP_527435.2| PREDICTED: protein MTO1 homolog, mitochondrial isoform 4 [Pan
           troglodytes]
          Length = 717

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/655 (43%), Positives = 406/655 (61%), Gaps = 50/655 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP----------------- 337
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+P                 
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAIS 393

Query: 338 --------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
                   GY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN+
Sbjct: 394 AHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINA 453

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           + + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  
Sbjct: 454 SLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLR 513

Query: 450 GMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTA 504
           G K  GC+ ++R +R            S+LKS+   S    K +   SIS  +    R A
Sbjct: 514 GYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-A 572

Query: 505 YEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 687


>gi|332363580|gb|EGJ41361.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1059]
          Length = 659

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 381/626 (60%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N     + FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPIKETNAKVEELGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|94989479|ref|YP_597580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS9429]
 gi|94993366|ref|YP_601465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS2096]
 gi|139474608|ref|YP_001129324.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes str. Manfredo]
 gi|209560261|ref|YP_002286733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes NZ131]
 gi|306826441|ref|ZP_07459753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes ATCC 10782]
 gi|166200619|sp|Q1J990|MNMG_STRPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200620|sp|Q1JJD7|MNMG_STRPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200623|sp|A2RH03|MNMG_STRPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94542987|gb|ABF33036.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus pyogenes MGAS9429]
 gi|94546874|gb|ABF36921.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS2096]
 gi|134272855|emb|CAM31135.1| glucose inhibited division protein A [Streptococcus pyogenes str.
           Manfredo]
 gi|209541462|gb|ACI62038.1| Glucose inhibited division protein A [Streptococcus pyogenes NZ131]
 gi|304431371|gb|EFM34368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes ATCC 10782]
          Length = 632

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 374/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              + + N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|307636905|gb|ADN79355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 908]
 gi|325995494|gb|ADZ50899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 2018]
 gi|325997091|gb|ADZ49299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 2017]
          Length = 621

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/630 (44%), Positives = 378/630 (60%), Gaps = 22/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQTPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE---RRQKRFAKYIQEYNFLRSL 477
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +      K+  + IQE N  R  
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYEELKKDQQAIQE-NLKR-- 476

Query: 478 LKSLVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           LK  VLT           L    I+ K DG +      L+   F+ + + S        +
Sbjct: 477 LKECVLTPSKEVLKRLSELDENPINDKMDGVS-----LLARDSFNAEKMRSFFSFLAPLN 531

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P
Sbjct: 532 ERVLEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRP 591

Query: 590 FNLLQASKIEGMTPAALNLLLIYI--KKNT 617
            +L +AS+I G+TPA L++L +YI  +KN+
Sbjct: 592 KSLFEASEISGITPANLDVLHLYIHLRKNS 621


>gi|116071928|ref|ZP_01469196.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
 gi|116065551|gb|EAU71309.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
          Length = 641

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 375/618 (60%), Gaps = 8/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA   A+LG +TAL +     I    CNPA+GG  K  LV E+DA
Sbjct: 10  SFDVIVVGGGHAGCEAAITTARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++GR+ADA  IQ R LN  +GPAV   R Q D+ LY   M + +    NL + +  V
Sbjct: 70  LGGVIGRLADATAIQKRTLNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREAMV 129

Query: 125 AGFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            G           I  +     S+     VVLT GTFL G I +G   + AGR G+  + 
Sbjct: 130 TGLEVGGEGEEQRIQGVRTYFGSVYAAQAVVLTAGTFLGGRIWVGHQSMAAGRAGEQAAE 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L  +       T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q+ 
Sbjct: 190 GLTETLQSLGLHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQMS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++  HQIFLEPEG
Sbjct: 250 CHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKESHQIFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LETK+
Sbjct: 310 RDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLETKR 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR   + D + F R  SYIG MIDDL S+ 
Sbjct: 370 VRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGEQDPVHFPREGSYIGTMIDDLVSQD 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  L+
Sbjct: 430 LREPYRVLTSRSEYRLILRGDNADRRLTPLGRELGLIDDRRWQLFEDKLQAMEGEKQRLE 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ L   +  + ++  +     +   T  + L  P     +L             V E  
Sbjct: 490 TVRLKVSDPVAPAVEQETGAAIKGSITLADLLRRPAMHAADLVRHGLADGALPLPVREGA 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+S+  LSNE +EKLS ++P  L QA+
Sbjct: 550 EIDIKYSGYLQRQQQQIDQVKRQSQRKLPSDLNYASIGTLSNEAREKLSAIQPTTLGQAN 609

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++ A +  LL++++
Sbjct: 610 RIPGVSQADITALLMWLE 627


>gi|33241285|ref|NP_876227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|81170569|sp|Q7V9J7|MNMG_PROMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33238815|gb|AAQ00880.1| NAD/FAD-utilizing enzyme apparently [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 667

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/633 (43%), Positives = 379/633 (59%), Gaps = 28/633 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAAIATAKLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+AD+  +Q R+LN  +GPAV   R Q D+  Y + M + +    NL + +  V 
Sbjct: 71  GGVIGRLADSTALQKRILNASRGPAVWALRAQTDKRQYSIEMLQMLQETPNLSLREAMVT 130

Query: 126 GF--------------NTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                           + EK I  +  I     S+     V+LTTGTFL+G I IG   +
Sbjct: 131 DLEIKSSPNRKKIKEQSEEKTIGQVQGIKTYFGSIYLAKAVILTTGTFLKGKIWIGNQSM 190

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  K  F+T RLKTGTP R+D +TI     E+Q +D     FSF 
Sbjct: 191 DAGRAGEQAATGLTEALQKLGFETSRLKTGTPPRVDRRTIDLGSLEEQKSDAADRFFSFD 250

Query: 230 TDKI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            ++  + +Q+ C +TRT  +TH++I  N+  + IY G I S GPRYCPSIEDKIVRF ++
Sbjct: 251 PERWKSGQQMSCYMTRTTQKTHQLIKNNLHLTPIYGGFINSKGPRYCPSIEDKIVRFSDK 310

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG NT  +Y  G+ST LPE +Q Q +RT+PGL+   ++RP YA+EYDY+  
Sbjct: 311 ESHQIFLEPEGRNTPEIYIQGLSTGLPEGMQLQLLRTLPGLKNCVMLRPAYAVEYDYLPA 370

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETKKI GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  D I F R +SYI
Sbjct: 371 TQLLASLETKKIEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARYVNNQDAIIFPREESYI 430

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MIDDL  K + EPYR+ TSR+EYR+ LR DNAD RLTP+G K+G + + +   F   I
Sbjct: 431 GTMIDDLIKKDLREPYRVLTSRSEYRLILRGDNADRRLTPLGYKVGLVNDYQWNIFQ--I 488

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR-------TAYEFLSYPDFSIQNLFSI 521
           ++ N  +   K  +   +   S  I+ K + ++        T    L  P   + NL   
Sbjct: 489 KQSNMEKE--KKRLEQQRIKDSDPIALKIEKESGASIKGSITLANLLRRPGMHMNNLIRH 546

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                     V E ++I+  Y+ Y  RQ ++ ++IK + KR +P + +Y+++  LS E +
Sbjct: 547 KLANNSLPLDVREGVEIDIKYSGYLKRQNLQIEQIKKQNKRALPSEVNYTNIKTLSQEAR 606

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           EKL+  +P    +AS++ G++ A L+ LLI++K
Sbjct: 607 EKLNATQPKTFGEASQLPGVSKADLSALLIWLK 639


>gi|146319817|ref|YP_001199529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis 05ZYH33]
 gi|146322008|ref|YP_001201719.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis 98HAH33]
 gi|253752794|ref|YP_003025935.1| glucose inhibited division protein A [Streptococcus suis SC84]
 gi|253754619|ref|YP_003027760.1| glucose inhibited division protein A [Streptococcus suis P1/7]
 gi|253756552|ref|YP_003029692.1| glucose inhibited division protein A [Streptococcus suis BM407]
 gi|166200624|sp|A4W4N0|MNMG_STRS2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200626|sp|A4VYE0|MNMG_STRSY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145690623|gb|ABP91129.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus suis 05ZYH33]
 gi|145692814|gb|ABP93319.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus suis 98HAH33]
 gi|251817083|emb|CAZ52735.1| glucose inhibited division protein A [Streptococcus suis SC84]
 gi|251819016|emb|CAZ56863.1| glucose inhibited division protein A [Streptococcus suis BM407]
 gi|251820865|emb|CAR47631.1| glucose inhibited division protein A [Streptococcus suis P1/7]
 gi|292559414|gb|ADE32415.1| Glucose-inhibited division protein A subfamily [Streptococcus suis
           GZ1]
 gi|319759212|gb|ADV71154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis JS14]
          Length = 638

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/617 (43%), Positives = 379/617 (61%), Gaps = 8/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA   A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMVAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ ++LN+ KGPAVR  R QAD+  Y   M+R +  QENL + Q  +
Sbjct: 68  LGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQADKAEYASEMKRTVERQENLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N       VV+TTGT LRG I IG LK  +G      S +L +
Sbjct: 128 DEILVEDGKVIGVRTATNQKFSAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASITLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +  +   + GR KTGTP R++ +TI ++ TE Q  DE+   FSF++   D + + QI C 
Sbjct: 188 NLKELGLEIGRFKTGTPPRVNARTINYEDTEIQPGDEKPNHFSFLSKDEDYLLD-QIPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG N
Sbjct: 247 LTYTNATSHEIINSNLHRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEGRN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETKKIS
Sbjct: 307 TDEIYVQGLSTSLPEDVQQDLIHSIKGLENAQMMRTGYAIEYDMVMPHQLRATLETKKIS 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG +
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKGTV 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R + F  +  +++     L+S+
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLESI 486

Query: 482 VL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQ 537
            L      N    ++ FK      TA EF+  PD +  +  + I P A    +  IE ++
Sbjct: 487 KLKPIKETNEKVVAMGFKPLTDALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIELIE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + + +++K  E++ IP D D+  + +++ E ++K  ++ P  + QAS+
Sbjct: 547 TEVKYEGYIAKALDQVEKMKRMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++L++Y++
Sbjct: 607 ISGVNPADISILMVYLE 623


>gi|315612259|ref|ZP_07887173.1| glucose inhibited division protein A [Streptococcus sanguinis ATCC
           49296]
 gi|315315652|gb|EFU63690.1| glucose inhibited division protein A [Streptococcus sanguinis ATCC
           49296]
          Length = 637

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 373/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N    ++ FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|253581094|ref|ZP_04858354.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847630|gb|EES75600.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 634

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/613 (42%), Positives = 373/613 (60%), Gaps = 5/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA   A+LG +T + T    +I  M CNP +GG  KGHLVRE+DAL
Sbjct: 18  YDIVVVGAGHAGCEAALAGARLGLNTVMFTVSVDSIALMPCNPNVGGSSKGHLVRELDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + QGEV 
Sbjct: 78  GGEMGKNIDKTFIQSKMLNCSKGPAVHSLRAQADKQAYSNEMRKTLENTPNLTIKQGEVT 137

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +     +   C  VVL TGT+L+     G +    G  G   +N L +S
Sbjct: 138 KLLVEDGKITGVKTYSGATYNCKAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANYLTDS 197

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   +  R KTGTPAR+ G TI + K E+QF DER++PFSF T  + +   Q  C +T
Sbjct: 198 LKELGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTNPEDVQIEQKSCWLT 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEGL T+
Sbjct: 258 YTNEKTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEGLYTN 317

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q +   ++PGLE   I++  YAIEYD INP++L+PTLE KKI GL
Sbjct: 318 EMYIGGMSSSLPEDVQEEMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKKIKGL 377

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K   EP
Sbjct: 378 FSGGQFNGSSGYEEAAAQGLIAGINAALEVKGQEQLILDRSEAYIGVLIDDLVTKENHEP 437

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-QKRFAKYIQEYNFLRSLLKSLV 482
           YRM TSRAEYR+ LR DNAD RL   G + G I E   QK   K  Q    +  +  + +
Sbjct: 438 YRMMTSRAEYRLLLRQDNADLRLRKKGYQAGLISEEDYQKILTKEEQIKTEISRVEHTNI 497

Query: 483 LTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +K + +   S+         T  E +  P+ S + +  +  +  +    V E++ I  
Sbjct: 498 GANKEVQTLLESYNSTPLKSGTTLAELIRRPELSYEAIKPLDKERPELPWDVQEQVDINI 557

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ+ + ++ K  E + IP D DY  + +L  E ++KL   +P ++ QAS+I G
Sbjct: 558 KYDGYIRRQLKQVEQFKKLEAKKIPTDLDYEKVGSLRIEARQKLEAYRPISIGQASRISG 617

Query: 601 MTPAALNLLLIYI 613
           ++PA +++LL+Y+
Sbjct: 618 VSPADISVLLVYL 630


>gi|94991466|ref|YP_599566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10270]
 gi|166200621|sp|Q1JED6|MNMG_STRPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94544974|gb|ABF35022.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10270]
          Length = 632

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLDSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|15611269|ref|NP_222920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori J99]
 gi|7674056|sp|Q9ZML9|MNMG_HELPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4154720|gb|AAD05783.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
          Length = 621

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/627 (44%), Positives = 373/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++V+GGGHAG EA+ +AAK+G    LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVVGGGHAGIEASLIAAKMGVRVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SN
Sbjct: 120 QEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQAIQENLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+++ + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELGENPINDKMDGVS-----LLARDSFNLEKMRSFFSFLVPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|325695736|gb|EGD37635.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK150]
          Length = 659

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 382/626 (61%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 VTLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|325567649|ref|ZP_08144316.1| glucose inhibited division protein A [Enterococcus casseliflavus
           ATCC 12755]
 gi|325159082|gb|EGC71228.1| glucose inhibited division protein A [Enterococcus casseliflavus
           ATCC 12755]
          Length = 640

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/628 (42%), Positives = 383/628 (60%), Gaps = 16/628 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 18  SYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG V
Sbjct: 78  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGIV 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L +
Sbjct: 138 EKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAD 197

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T D+  N+  E C +
Sbjct: 198 HLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCWL 257

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLNT
Sbjct: 258 TYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLNT 317

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I  
Sbjct: 318 EEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 377

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  E
Sbjct: 378 LFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTNE 437

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E    ++  Y+ +   + + +K L 
Sbjct: 438 PYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPE---AQYEAYVAKKEAVEAEIKRLS 494

Query: 483 L--------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                        L++   +  +DG    A EFL  P+ +   +              IE
Sbjct: 495 KIRIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIE 552

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + Q
Sbjct: 553 QVEIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQ 612

Query: 595 ASKIEGMTPAALNLLLIYIKKNT-VKLN 621
           AS+I G+ PA +++L++YI++   VK+N
Sbjct: 613 ASRISGVNPADISILMVYIEQGKIVKVN 640


>gi|238917974|ref|YP_002931491.1| glucose inhibited division protein A [Eubacterium eligens ATCC
           27750]
 gi|238873334|gb|ACR73044.1| glucose inhibited division protein A [Eubacterium eligens ATCC
           27750]
          Length = 627

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/620 (43%), Positives = 371/620 (59%), Gaps = 9/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDV+V+G GHAGCEAA  AA++G  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IREEYDVVVVGAGHAGCEAALAAARMGLETIIFTVSVESIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  DA  IQ ++LN  KGPAV   R QAD+  Y   M+  + + E+L + Q
Sbjct: 64  IDALGGEMGKNIDATFIQSKMLNASKGPAVHSLRAQADKSDYSRRMRNVLENTEHLHIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+        I  +     +      VVL TG +L+     G +    G  G   +N 
Sbjct: 124 AEVSEIIVNDGKIGGVKTVSGAEYIAKAVVLCTGVYLKARCIYGDVSYHTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L  S +    +  R KTGTPAR+D +++ + K  +QF D+R++PFSF TD   I   Q+ 
Sbjct: 184 LTQSLIDNGIEVRRFKTGTPARVDKRSVDFSKMTEQFGDKRVVPFSFETDPESIQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETH+IIM+N+  S +YSGDI   GPRYCPSIEDK+VRF +++ HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHKIIMDNLDRSPLYSGDIHGTGPRYCPSIEDKVVRFADKDRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S+++PE++Q+   RT+PGLE V I+R  YAIEYD IN  +L  +LE KK
Sbjct: 304 LYTNEMYLGGMSSSMPEDVQYAMYRTVPGLENVRIVRNAYAIEYDCINAVQLKSSLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQG++AGIN+A    K + +   R++SYIGV+IDDL +K 
Sbjct: 364 IEGLFAGGQFNGSSGYEEAAAQGIIAGINAALFVKKEEPLILDRSESYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RLT  G ++G I E R  R  + IQ  +     +K
Sbjct: 424 TAEPYRMMTSRAEYRLILRQDNADIRLTKYGYRVGLISEERMNRLTRKIQLIDEEIERVK 483

Query: 480 SLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           S+ + +   S        +G T      T  E +  P+ S   L  I     +    V E
Sbjct: 484 SVNIGTG--SEVQKVLTDNGSTELTTGATLAELIRRPELSYDVLAPIDKHRPELPWDVCE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ+ + +  K  E +LIP   DY  +  L  E  +KL   +P ++ Q
Sbjct: 542 QVNINLKYEGYIDRQLRQVEHFKKLENKLIPDSLDYLGISGLRKEAMQKLDKFRPRSIGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G++PA +++LL+Y++
Sbjct: 602 ASRISGVSPADISVLLVYLE 621


>gi|225869457|ref|YP_002745405.1| glucose inhibited division protein A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702733|emb|CAX00877.1| glucose inhibited division protein A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 632

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/619 (43%), Positives = 377/619 (60%), Gaps = 8/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGVEASLAASRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           V++TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVENGKVVGVLTATGQKYAAQAVIITTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +  +   + GR KTGTP R+   +I ++ TE Q  D     FSFM+   D + N QI C 
Sbjct: 188 NLKRLGLEIGRFKTGTPPRVKASSIDYEVTEIQPGDVTPNHFSFMSKDKDYLAN-QIPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +
Sbjct: 247 LTYTNQISHDIITKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGFD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK IS
Sbjct: 307 TEEVYVQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKMIS 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--L 478
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F  K  Q  N L+ L  +
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDDERWSAFEIKKNQFDNELKRLDSI 486

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQ 537
           K   +   N     + FK      TA EF+  P+     + S I P A +  + +IE L+
Sbjct: 487 KLKPIKETNARVQKLGFKPLTDAMTAKEFMRRPEVDYATVVSFIGPAAEELDAKMIELLE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  + + +  ++K  E++ IPK  D+ ++ +++ E ++K   + P  + QAS+
Sbjct: 547 TEIKYEGYIKKALDQVAKMKRMEEKRIPKTIDWDAIDSIATEARQKFKKINPETIGQASR 606

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+ PA +++L++Y++ N
Sbjct: 607 ISGVNPADISILMVYLEGN 625


>gi|154175126|ref|YP_001407617.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Campylobacter curvus 525.92]
 gi|112802522|gb|EAT99866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter curvus 525.92]
          Length = 631

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/615 (44%), Positives = 369/615 (60%), Gaps = 9/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+GGGHAG EA+  AAK+G  T LIT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 16  FNVIVVGGGHAGIEASLAAAKMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 75

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q    
Sbjct: 76  GGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIAT 135

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +    I+ +     ++   + +++TTGTFL G+IH+G  K+ AGR+G+  S +L  S
Sbjct: 136 EILSANEQITGVKTHLGNVYETTKLIITTGTFLNGLIHVGFNKLKAGRVGELSSINLSQS 195

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  R+D KTI +   E+Q  D +   FSF T      Q+ C I  T
Sbjct: 196 LRNLGLEMGRLKTGTCPRIDAKTIDFSVLERQEGDAKPAAFSFRTQHFAPEQLPCYIAYT 255

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+       
Sbjct: 256 NETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTREASEY 315

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP ++Q   +R++ G E   I+R GYAIEYDY+ P EL  +LETKK+ GL+L
Sbjct: 316 YINGFSTSLPYDVQVAMLRSVRGFENARIVRHGYAIEYDYVVPTELKHSLETKKVRGLYL 375

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN+A   +  D +   R ++YIGV+IDDL +KG  EPYR
Sbjct: 376 AGQINGTTGYEEAAAQGLMAGINAALNLDAKDPLVLRRDEAYIGVLIDDLVTKGTKEPYR 435

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL----LKSL 481
           MFTSRAEYR+ LR DNA  RL   G +LG I +    R  +     N  + L     +  
Sbjct: 436 MFTSRAEYRLLLREDNAILRLGGYGRELGLIDDETHARIEQI--RVNLAKGLEILNTREF 493

Query: 482 VLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             + +NL   +    +D   +  T  + ++   F+ + L  +           +E++  E
Sbjct: 494 TPSKQNLEFLA-GLDEDVISEKVTLQKIVARKSFTSEKLRKLDAFFENLDEASLEQILTE 552

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y   Q  +  ++K      IP++F +  +  LSNE+ EKL    P  L  AS+I 
Sbjct: 553 CKYSHYIAEQKNQIDKMKDMMSVKIPENFSFRGISGLSNEVVEKLEKFAPPTLFAASEIS 612

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+++L IYIK
Sbjct: 613 GITPAAIDILHIYIK 627


>gi|326798714|ref|YP_004316533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sphingobacterium sp. 21]
 gi|326549478|gb|ADZ77863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sphingobacterium sp. 21]
          Length = 620

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/620 (45%), Positives = 388/620 (62%), Gaps = 18/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+G GHAGCEAAA AA LG+   LIT    TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YNVIVVGAGHAGCEAAAAAANLGSKVLLITMNMGTIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G +AD   IQFR+LN+ KGPA+  PR+Q DR  +    + ++ S  N+D  Q  V 
Sbjct: 65  GGYSGIIADKTTIQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRLQLESLSNIDFWQDTVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++     ++      I    VVLT GTFL G+IHIG+ K   GR G+  +  L   
Sbjct: 125 EIIVDQGRAKGVITSLGIRIEADAVVLTNGTFLNGIIHIGEKKFGGGRTGEKAATGLTEQ 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +   F++GR+KTGTP R+DG+T+ + K E+Q+ DE+   FS+ +  + + Q  C IT T
Sbjct: 185 LISIGFESGRMKTGTPPRVDGRTLDYTKMEEQWGDEKRGRFSYQSIDLPHEQRCCWITYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H  + E  + S +++G IK  GPRYCPSIEDKI RF ER+ HQIF+EPEG  T  +
Sbjct: 245 NTNVHDTLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERDRHQIFVEPEGWRTHEI 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LPE++Q + +R IPG E   + RPGYAIEYDY  P +L  TLETKK+  LF 
Sbjct: 305 YVNGFSTSLPEDVQFKALRQIPGFENAKMFRPGYAIEYDYFPPMQLDLTLETKKVKNLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA+QGL+AGIN+ ++ N L  +   R++SYIGV+IDDL +KG  EPYR
Sbjct: 365 AGQINGTTGYEEAASQGLIAGINAHQRINDLHELILKRSESYIGVLIDDLVTKGTEEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-FLRSLLKSLVLT 484
           MFTSRAE+R+ LR DNAD RLTP+  +LG   E    +    I + +  +  L K+ V  
Sbjct: 425 MFTSRAEHRLLLRQDNADIRLTPLAHQLGLASEEALDKVKTKISKSDEIVEYLRKTSVEA 484

Query: 485 SK------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK----FSSLVIE 534
           SK       LSS+ ++     +    +  L+ P  +I NL       ++    FS  +IE
Sbjct: 485 SKMNPILEKLSSSPLT-----QNIKMFNVLTRPQLNIWNLAEANSSLKELLADFSEEIIE 539

Query: 535 RLQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           + +I+  Y +Y  +++ I  K  K E+K + P  FDY+ L +LS E +EKL  +KP  L 
Sbjct: 540 QAEIKVKYDSYFDKEIEIVNKMKKMEDKEINPH-FDYNQLISLSKEAREKLIKIKPRTLG 598

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA +++L++++
Sbjct: 599 QASRISGVSPADVSVLMVHM 618


>gi|307705800|ref|ZP_07642643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK597]
 gi|307620632|gb|EFN99725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK597]
          Length = 637

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|325954631|ref|YP_004238291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Weeksella virosa DSM 16922]
 gi|323437249|gb|ADX67713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Weeksella virosa DSM 16922]
          Length = 623

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/628 (44%), Positives = 387/628 (61%), Gaps = 31/628 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA +G  T LIT     I  MSCNPA+GG+ KG ++REIDA
Sbjct: 6   SYDVIVVGGGHAGAEAAAAAANMGCKTLLITMNLQNIAQMSCNPAMGGIAKGQIIREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVI 120
           L G  G + D   IQF++LN+ KGPA+  PR Q+DR    E +RLA+++     EN+D  
Sbjct: 66  LGGYSGIITDKTMIQFKMLNLSKGPAMWSPRAQSDRMRFAEEWRLALEK----TENIDFF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +   +  ++      IR   V+LT GTFL G+IH+G+ +   GRMG+  + 
Sbjct: 122 QDMVKNLVVKNRKVEGVITNMGLEIRSKAVILTNGTFLNGLIHVGEKQFGGGRMGEGAAF 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    ++  FD GR+KTGTP R+DG+++ + K  +Q  DE    FS+       +Q  C
Sbjct: 182 GITEQLIELGFDAGRMKTGTPPRIDGRSLDFSKMMEQPGDENPGKFSYTETPKLTKQRSC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ TN E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQIF EPEG 
Sbjct: 242 YISYTNQEVHDLLREGFDRSPMFNGTIKSIGPRYCPSIEDKINRFADKDRHQIFAEPEGW 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT   Y NG ST+LP E+Q + IR+IPG EK    RPGYAIEYDY  P +L  TLETK +
Sbjct: 302 NTIEYYINGFSTSLPMEVQGKAIRSIPGFEKAKFFRPGYAIEYDYFPPTQLKHTLETKLV 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL +KGV
Sbjct: 362 DNLYFAGQINGTTGYEEAASQGLIAGINAALKLQEKDPFILKRNEAYIGVLIDDLITKGV 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLK 479
            EPYRMFTSRAEYRI LR DNAD RLTPIG +LG   ERR KR   KY + + F+ + L+
Sbjct: 422 DEPYRMFTSRAEYRILLRQDNADERLTPIGYQLGLASERRMKRVEEKYSKAHAFI-NYLE 480

Query: 480 SLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV-- 532
           +  +T K ++ T         KQ  K       ++ P+  + +  +I     K +S V  
Sbjct: 481 NESVTPKQINPTIEERKGTPLKQANKMAAV---IARPELKLNDFLTI----EKIASYVEK 533

Query: 533 -------IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                  +E  +I+  Y  Y  ++   A ++   E   IP + DY  L +++ E ++KLS
Sbjct: 534 NQLGDEELEEAEIQIKYRGYIKKEKNNADKLTRLENLKIPANIDYHQLNSMTIEARQKLS 593

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYI 613
            ++P  + QAS+I G++PA +++LLI++
Sbjct: 594 KIRPETVAQASRISGISPADISVLLIHM 621


>gi|168493830|ref|ZP_02717973.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC3059-06]
 gi|221231052|ref|YP_002510204.1| glucose inhibited division protein A [Streptococcus pneumoniae ATCC
           700669]
 gi|183576020|gb|EDT96548.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC3059-06]
 gi|220673512|emb|CAR67992.1| glucose inhibited division protein A [Streptococcus pneumoniae ATCC
           700669]
 gi|332076576|gb|EGI87038.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA17545]
          Length = 637

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMILPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|307208732|gb|EFN86010.1| Protein MTO1-like protein, mitochondrial [Harpegnathos saltator]
          Length = 607

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/610 (44%), Positives = 386/610 (63%), Gaps = 29/610 (4%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+T K STIG MSCNP+ GG+GKGHL+RE+DALDG+  R+ D +GI +++LN +
Sbjct: 1   MGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLMREVDALDGVCCRICDISGIHYKILNKR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS--IVMQDNSM 144
           KGPAV G R Q DR+LY+  +Q E+ +   L + +  V       + +S   ++++D + 
Sbjct: 61  KGPAVWGLRAQIDRKLYKKHLQAELFNMPGLHICESSVEDLILANDSLSCRGVILKDGTK 120

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I   +VV+TTGTFL+G I+IG  K PAGRM D PS  L N+  +  F  GRLKTGTP RL
Sbjct: 121 IFGDSVVITTGTFLKGQINIGLEKRPAGRMDDEPSIGLANTLDRLGFRVGRLKTGTPPRL 180

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSA 261
           + ++I + K  K   DE  IPFSFM +K+    + Q+   +T TN    +II +N+  + 
Sbjct: 181 EKESIDFTKCIKHLPDECPIPFSFMNNKVWLLPDEQVPTYLTYTNKNVAKIIRDNMHCNL 240

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
             + +I   GPRYCPSIE K++RF     HQ++LE EGL++ ++YP+G+S  LPEE Q +
Sbjct: 241 HVTEEIT--GPRYCPSIESKVLRFATTT-HQVWLELEGLDSPLIYPSGLSCTLPEEKQVE 297

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            ++ I GLE   + RPGY +EYDYI+P+EL   LETKKI GLFLAGQINGTTGYEEAAAQ
Sbjct: 298 LVKCILGLENARLARPGYGVEYDYIDPRELTSELETKKIPGLFLAGQINGTTGYEEAAAQ 357

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G++AG+N+A K  K   +  SRT+ YIGV+IDDLT++G  EPYRMFTSRAE+R+SLRPDN
Sbjct: 358 GIIAGVNAAAKVLKKPPLVISRTEGYIGVLIDDLTTQGTTEPYRMFTSRAEFRLSLRPDN 417

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-------SIS 494
           AD+RLT  G K+GC+   R  R       +N  R + +++ L      S         + 
Sbjct: 418 ADHRLTEKGYKVGCVSRERMDR------TWNTQRKIQEAIQLLQSERQSNHKWRHMLKLK 471

Query: 495 FKQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKF----SSLVIERLQIESSYAAYTGR 548
             +  + ++A++ L  +  + +   L  I P+         +L+I R++IE+ YA     
Sbjct: 472 HTKSIQNKSAFDILGNTNDEITFAQLAKILPELLGHLDGDPTLMI-RVEIEAKYAFVVAN 530

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSILKPFNLLQASKIEGMTPAALN 607
           Q  +  +I+  E+ +IP+D DY+S    LSNE KEKL+   P  +  A+KI G+TP A+ 
Sbjct: 531 QQNQVDDIRRNEQMIIPEDIDYNSNELNLSNEDKEKLTKYLPRTIAAANKISGVTPIAIL 590

Query: 608 LLLIYIKKNT 617
            LL YI+  +
Sbjct: 591 KLLYYIRHRS 600


>gi|205831543|sp|A7GWM5|MNMG_CAMC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 619

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/615 (44%), Positives = 369/615 (60%), Gaps = 9/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+GGGHAG EA+  AAK+G  T LIT     IG+ SCNPAIGGL KGHLV+EIDAL
Sbjct: 4   FNVIVVGGGHAGIEASLAAAKMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q    
Sbjct: 64  GGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIAT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +    I+ +     ++   + +++TTGTFL G+IH+G  K+ AGR+G+  S +L  S
Sbjct: 124 EILSANEQITGVKTHLGNVYETTKLIITTGTFLNGLIHVGFNKLKAGRVGELSSINLSQS 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  R+D KTI +   E+Q  D +   FSF T      Q+ C I  T
Sbjct: 184 LRNLGLEMGRLKTGTCPRIDAKTIDFSVLERQEGDAKPAAFSFRTQHFAPEQLPCYIAYT 243

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+       
Sbjct: 244 NETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTREASEY 303

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP ++Q   +R++ G E   I+R GYAIEYDY+ P EL  +LETKK+ GL+L
Sbjct: 304 YINGFSTSLPYDVQVAMLRSVRGFENARIVRHGYAIEYDYVVPTELKHSLETKKVRGLYL 363

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN+A   +  D +   R ++YIGV+IDDL +KG  EPYR
Sbjct: 364 AGQINGTTGYEEAAAQGLMAGINAALNLDAKDPLVLRRDEAYIGVLIDDLVTKGTKEPYR 423

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL----LKSL 481
           MFTSRAEYR+ LR DNA  RL   G +LG I +    R  +     N  + L     +  
Sbjct: 424 MFTSRAEYRLLLREDNAILRLGGYGRELGLIDDETHARIEQI--RVNLAKGLEILNTREF 481

Query: 482 VLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             + +NL   +    +D   +  T  + ++   F+ + L  +           +E++  E
Sbjct: 482 TPSKQNLEFLA-GLDEDVISEKVTLQKIVARKSFTSEKLRKLDAFFENLDEASLEQILTE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y   Q  +  ++K      IP++F +  +  LSNE+ EKL    P  L  AS+I 
Sbjct: 541 CKYSHYIAEQKNQIDKMKDMMSVKIPENFSFRGISGLSNEVVEKLEKFAPPTLFAASEIS 600

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+++L IYIK
Sbjct: 601 GITPAAIDILHIYIK 615


>gi|15675920|ref|NP_270094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes M1 GAS]
 gi|71911651|ref|YP_283201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS5005]
 gi|21263681|sp|Q99XI8|MNMG_STRP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|13623159|gb|AAK34815.1| glucose inhibited division protein [Streptococcus pyogenes M1 GAS]
 gi|71854433|gb|AAZ52456.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS5005]
          Length = 632

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPTNIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|315640366|ref|ZP_07895481.1| glucose inhibited division protein A [Enterococcus italicus DSM
           15952]
 gi|315483871|gb|EFU74352.1| glucose inhibited division protein A [Enterococcus italicus DSM
           15952]
          Length = 634

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/621 (42%), Positives = 379/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+G GHAG EAA  A+++G  T L+T     +G M CNP++GG  KG +VREIDA
Sbjct: 8   SFDVIVVGAGHAGSEAALAASRMGNKTLLLTINLDMVGFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSAEMKHTIEQEPNLTLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++    +      VV+T GT LRG I IG+LK  +G     PS  L +
Sbjct: 128 ERLIVEDHVCKGVITATGARYAAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +   +  R KTGTP R+ G TI +  TE Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGLEIARFKTGTPPRVKGSTIDYSVTEIQPGDDEPNHFSFGTPDSAYKLEQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGL+T
Sbjct: 248 TYTNEKTHEIIHKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQLFLEPEGLHT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   +R+I GLE+V ++R GYAIEYD + P +L PTLETK I+ 
Sbjct: 308 EEVYVQGLSTSLPEDVQVAMLRSIAGLEEVEMMRTGYAIEYDVVVPHQLRPTLETKPIAN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+  K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAGLKVQGKEPLIVKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQ-EYNFLRS-L 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + F    K+++ E   LR+  
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHQIGLVKEEQYQAFLDKKKHVEAELKRLRNER 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           LK        L     +  +DG    A + L  P+   Q++    PD    +   IE+++
Sbjct: 488 LKPTQEVQAMLIQRGSAELKDGI--LAADLLKRPELMYQDIVQFLPDTPSLTKKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + + + +++K  E + IP+  DYS++  L+ E K+KL  ++P  L QAS+
Sbjct: 546 IQLKYEGYINKALEKVEKLKRMEAKRIPEKIDYSAINGLATEAKQKLQKIQPETLAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++L++YI++  +
Sbjct: 606 ISGVNPADMSILMVYIEQGKI 626


>gi|282848772|ref|ZP_06258167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella parvula ATCC 17745]
 gi|282581558|gb|EFB86946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella parvula ATCC 17745]
          Length = 623

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 383/620 (61%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  D    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNLDNMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGRTIGLV---KDDRWAKFTAKKAAIEEAMDMLRNT 482

Query: 485 SKNLSSTSISFKQDGKT---RT---AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  + +  +   T   RT   AY+ +   + S    +++  DA   ++++  V E 
Sbjct: 483 PVNPSKETQALLESLGTAPIRTGIHAYDLVKRNELS----YAVVADAFGLKRYTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 VDISITYEGYIKKQMEQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|76798866|ref|ZP_00781075.1| glucose-inhibited division protein A [Streptococcus agalactiae
           18RS21]
 gi|76585789|gb|EAO62338.1| glucose-inhibited division protein A [Streptococcus agalactiae
           18RS21]
          Length = 633

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/620 (43%), Positives = 381/620 (61%), Gaps = 14/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GH+G EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDIIVVGAGHSGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N      +VV+TTGT LRG I +G LK  +G      S +L +
Sbjct: 128 DEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECG 241
           +      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C 
Sbjct: 188 NLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  
Sbjct: 247 LTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRY 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG L
Sbjct: 367 GLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL 477
           EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R    +KR  ++  E   L S+
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSI 486

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIE 534
            LK +  T+K +    + FK      TA EF+  P   +++   F  C D     S VIE
Sbjct: 487 KLKPVSETNKRIQ--ELGFKPLTDALTAKEFMRRPQITYAVATDFVGCAD-EPLDSKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L Q
Sbjct: 544 LLETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +++L++Y++
Sbjct: 604 ASRISGVNPADISILMVYLE 623


>gi|225575643|ref|ZP_03784253.1| hypothetical protein RUMHYD_03736 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037153|gb|EEG47399.1| hypothetical protein RUMHYD_03736 [Blautia hydrogenotrophica DSM
           10507]
          Length = 646

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/621 (42%), Positives = 379/621 (61%), Gaps = 9/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYD++V+G GHAGCEAA   A+LG ST + T    +I  M CNP IGG  KGHLVRE
Sbjct: 20  LTESYDIVVVGAGHAGCEAALAGARLGFSTVMFTVSVDSIAMMPCNPNIGGSSKGHLVRE 79

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   +Q ++LN  KGPAV   R QAD++ Y   M++ + +  NL + Q
Sbjct: 80  VDALGGEMGKNIDKTFLQSKMLNRSKGPAVHSLRAQADKQRYSNEMRKTLENTPNLTIKQ 139

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +   I+ +     ++  C  V+L TGT+L+     G +    G  G   +N 
Sbjct: 140 GEVTKLLVKDGKITGVETYSGAVYDCKAVILCTGTYLKARCIYGNVSSDTGPNGLQAANH 199

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S  +      R KTGTPAR+ G +I + K E+QF DE+++PFSF TD   +   QI 
Sbjct: 200 LTDSLRELGIRMYRFKTGTPARIAGNSIDYSKMEEQFGDEKIVPFSFSTDPESVQIPQIS 259

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 260 CWLTYTNERTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEG 319

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+Q  R++ GLE   I++  YAIEYD I+ ++L  TLE K 
Sbjct: 320 LYTNEMYIGGMSSSLPEDVQYQMYRSVAGLENARIVKSAYAIEYDCIDARQLNATLEFKN 379

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ NG++GYEEAAAQGLVAGIN+A K    D +   R+++YIGV+IDDL +K 
Sbjct: 380 IKGLFSAGQFNGSSGYEEAAAQGLVAGINAALKIQGRDFMVLDRSEAYIGVLIDDLVTKE 439

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL-- 477
             EPYRM TSRAEYR+ LR DNAD RL   G ++G I E   +R  +  +E    R +  
Sbjct: 440 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYEVGLIDEEVYQRTLE--KERLIEREIKR 497

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           ++ + L +       +   Q    +   T  E +  P+ + + L  I P+  +    V E
Sbjct: 498 IEHVTLGASEAVQNVLERYQSTALKSGTTLAELIRRPELNYEILAEIDPERPQLPWDVKE 557

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ  + ++ K  E++ IP++ DY  +  L  E K+KL + +P ++ Q
Sbjct: 558 QVNINIKYDGYIRRQKKQVEQFKKLEEKKIPENIDYDEISGLRIEAKQKLKLYRPMSIGQ 617

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++PA +++LL+Y+ +
Sbjct: 618 ASRIAGVSPADVSVLLVYMPR 638


>gi|86610246|ref|YP_479008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123500771|sp|Q2JI26|MNMG_SYNJB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86558788|gb|ABD03745.1| glucose-inhibited division protein A [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 643

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/618 (44%), Positives = 377/618 (61%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGH+GCEAA  AA+LG +T ++T     I    CNPA+GG  K  LV EIDAL
Sbjct: 15  YDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +G V 
Sbjct: 75  GGEMGKVTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLTIREGTVT 134

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +N  +  +V    ++  C  V+LTTGTFL G I IG+    AGR G+     L +
Sbjct: 135 DLVLGRNDEVVGVVTHFGTIFGCRAVILTTGTFLGGRIWIGRHWQAAGRAGEFAVEGLTD 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +  +  F+TGRLKTGTPAR+D +++ +   E+Q  D  +  FSF  +    R Q++C +T
Sbjct: 195 TLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDPEVWVPREQMDCYLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETHRII EN+  + +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG +  
Sbjct: 255 RTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST +PE+IQ Q +R++PGLE+  ++RP YA+EYDY+   +L+PTL TKK+ GL
Sbjct: 315 ELYIQGFSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL +K + EP
Sbjct: 375 FCAGQINGTTGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIGTLIDDLCTKELREP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-------QKRFAKYIQEYNFLRS 476
           YRM TSR+EYR+ LR DNAD RLTP+G + G I +RR       Q R A  I+     R 
Sbjct: 435 YRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQR- 493

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +K+  L    LS   ++ +    + T  E L        +L  +     +      E  
Sbjct: 494 -VKAHDLAGIQLS--QLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAA 550

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y+ Y  RQ  + +++  +  R +P D DY S+P LS E ++KLS ++P  + QA+
Sbjct: 551 EIAVKYSGYIQRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLTVGQAA 610

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ PA +N LLIY++
Sbjct: 611 RIGGVNPADINALLIYLE 628


>gi|326793315|ref|YP_004311136.1| glucose inhibited division protein A [Clostridium lentocellum DSM
           5427]
 gi|326544079|gb|ADZ85938.1| glucose inhibited division protein A [Clostridium lentocellum DSM
           5427]
          Length = 636

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/614 (44%), Positives = 375/614 (61%), Gaps = 5/614 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGGHAGCEAA  AA++G  T + T    +I  M CNP +GG  KGHLVREIDAL 
Sbjct: 8   DIVVIGGGHAGCEAALAAARMGKKTIMFTMSLDSIAMMPCNPNVGGTSKGHLVREIDALG 67

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ R+LN  KGPAV   R QAD+  Y  AM++ + + E L + Q EV  
Sbjct: 68  GEMGKNIDRTYIQSRMLNTAKGPAVHSLRAQADKTKYSHAMKKVLENVEKLIIKQQEVVE 127

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +V    ++  C  +VL  GT++R     G+     G  G   SN L  + 
Sbjct: 128 VQVEDGKVKGVVTNTGAIYECKAIVLAGGTYVRSRCLTGECIEYTGPNGLKTSNKLSEAL 187

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGITR 244
            +   +  R KTGTPAR+D +T+ + K E Q  DER++PFSF   +  I   Q  C +T 
Sbjct: 188 KELGIELRRFKTGTPARVDARTVDFSKMEPQHGDERIVPFSFENKEKDIKRDQYPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +T  
Sbjct: 248 TNEKTHQIIRDNLHRSPMYSGVIEGTGPRYCPSIEDKVVRFADKERHQVFIEPEGEDTTE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q   +RT+ GLE V ++R GYAIEYD INP +L  +LE K I G F
Sbjct: 308 MYVQGMSSSLPEEVQIAMLRTLKGLENVEVMRIGYAIEYDCINPMQLKHSLELKAIEGFF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAAAQGLVAGIN+A K +  D +   R++ YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQMNGSSGYEEAAAQGLVAGINAALKVDGRDPMIIDRSEGYIGVLIDDLVTKGTKEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G + G I   R +RFA      +     LK + + 
Sbjct: 428 RMMTSRAEYRLLLRQDNADLRLTQKGYEAGLISAGRYERFAAKKSAIDAELERLKHVYVG 487

Query: 485 SKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +       +  K     R+     E L  P+   ++   +  D    S  VIE++ IE  
Sbjct: 488 TSEKVQAILEKKGSTPLRSGIALAEILKRPELEYEDFTEVDTDRPDLSLDVIEQVMIELR 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQM + ++ K  EKRLIP D +Y  + +L  E K+KL  ++P ++ QAS+I G+
Sbjct: 548 YEGYITRQMRQVEQFKKLEKRLIPADINYDDVYSLRLEAKQKLEQVRPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LL+Y+++
Sbjct: 608 SPADISMLLVYLEQ 621


>gi|309799044|ref|ZP_07693297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus infantis SK1302]
 gi|308117279|gb|EFO54702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus infantis SK1302]
          Length = 638

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 374/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGISHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N    ++ FK      TA EFL  P+ S Q++ + I P A +    +IE ++ E
Sbjct: 489 KPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|332687268|ref|YP_004457042.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Melissococcus plutonius ATCC 35311]
 gi|332371277|dbj|BAK22233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Melissococcus plutonius ATCC 35311]
          Length = 632

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/623 (42%), Positives = 385/623 (61%), Gaps = 12/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TYDVIVVGAGHAGSEAALSAARMGCKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD++ Y   M++ I  ++NL + QG V
Sbjct: 68  LGGEMGRNIDKTSIQMRMLNTGKGPAVRALRAQADKQEYATEMKKTIEKEKNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   ++    ++ +   V++T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EQLVVEDGICKGVITSTGAIYQSQAVIITAGTSLRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
              +  F+  R KTGTP R+   TI ++ TE+Q  D+ +  FS+ T  +  +  Q  C +
Sbjct: 188 HLKELGFEIARFKTGTPPRVKSSTIDYNATEEQAGDKAINYFSYRTKEEAYSKEQRSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLNT
Sbjct: 248 TYTNEMTHEIIRKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFEDKSRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L PTLETK I+ 
Sbjct: 308 EEVYVQGLSTSLPEDVQTNVLHSIDGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKIINN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K          R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIKGKAPFIMKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT  G  +G + E + + +    A   +E  FL++  
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEKGYAMGLVKEEQYQEYLIKKATIEKEIAFLQTTR 487

Query: 478 LKSLVLTSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIER 535
           +K      + L+   S+  K    +  A +FL  P+ +  +L    P++ +  +  VIE+
Sbjct: 488 IKPTDDVQQFLTEKGSVPLKD---SLLASDFLKRPEINFHDLQQFIPNSDQTLNDKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + + +  ++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAVEKVDKLKRMEAKRIPENIDYYAINGLATEAKQKLQKIQPETMAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA L++L++YI++  +
Sbjct: 605 SRISGVNPADLSILMVYIEQGKI 627


>gi|257875885|ref|ZP_05655538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC20]
 gi|257810051|gb|EEV38871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC20]
          Length = 630

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/624 (42%), Positives = 380/624 (60%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L +
Sbjct: 128 EKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T D+  N+  E C +
Sbjct: 188 HLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLNT
Sbjct: 248 TYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E    ++  Y+ +   + + +K L 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPE---AQYEAYVAKKEAVEAEIKRLS 484

Query: 483 L--------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                        L++   +  +DG    A EFL  P+ +   +              IE
Sbjct: 485 KIRIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIE 542

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + Q
Sbjct: 543 QVEIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++L++YI++  +
Sbjct: 603 ASRISGVNPADISILMVYIEQGKI 626


>gi|251783536|ref|YP_002997841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242392168|dbj|BAH82627.1| putative tRNA(5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 632

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 374/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++          TVV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKTVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLDSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L++Y++ N
Sbjct: 608 SGVNPADISILMVYLEGN 625


>gi|229368699|gb|ACQ62984.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Dasypus novemcinctus]
          Length = 675

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/632 (45%), Positives = 407/632 (64%), Gaps = 29/632 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 34  FDVIVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 93

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V 
Sbjct: 94  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKYNMQKEILSTPLLTVQEGAVE 153

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +  K  +S +V+ D S I   +V+LTTGTFLRG++ IG    PAGR+GD 
Sbjct: 154 DLILTEPEPEHPGKCRVSGVVLMDGSTIYAGSVILTTGTFLRGMVIIGLEMHPAGRLGDQ 213

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D   +PFSF+ + +  + 
Sbjct: 214 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILCKQTPDNPSVPFSFINEAVWIKP 273

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN    +I++EN+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 274 EDQLPCYLTHTNPTVDKIVLENLHLNSHVKETTR--GPRYCPSIESKVLRFPNRV-HQVW 330

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I +I GLEK  +I PGY ++YDY++P+++ P 
Sbjct: 331 LEPEGIDSDLIYPQGLSVTLPAELQEKMITSIRGLEKAKLIHPGYGVQYDYVDPRQISPF 390

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDD
Sbjct: 391 LETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVISRTEGYIGVLIDD 450

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNF 473
           LT+ G  EPYRMFTSR E+R+SLRPDNAD RLT    K  GC+ ++R +R +        
Sbjct: 451 LTTLGTSEPYRMFTSRVEFRLSLRPDNADCRLTHRAYKDAGCVSQQRYERASWMKSSLEE 510

Query: 474 LRSLLKSLVLTS----KNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDA-R 526
             S+LKS+   S    K +   SIS    GK+   +A + L Y +  ++ L    P+  +
Sbjct: 511 GISVLKSIEFMSSKWKKLIPEASISM---GKSLPLSALDVLKYEEVDMELLAKAVPEPLK 567

Query: 527 KFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKE 582
           K++    + ERL+IE++Y      Q  E ++++ +E   +P++ DY +L   +LS+E +E
Sbjct: 568 KYTECRELAERLKIEATYELALFHQQQEIEDVQRDEALRLPENLDYLTLKDVSLSHEARE 627

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           KL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 628 KLHFSRPQTIGAASRIPGVTPAAIVNLLRFVK 659


>gi|312890488|ref|ZP_07750024.1| glucose inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
 gi|311296946|gb|EFQ74079.1| glucose inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
          Length = 620

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/630 (44%), Positives = 392/630 (62%), Gaps = 30/630 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y+VIV+G GHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   KKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGTIAQMSCNPAMGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDV 119
           AL G  G ++D   IQFR+LN+ KGPA+  PRTQ DR    E +RLA++R      N+D 
Sbjct: 63  ALGGYSGIISDKTSIQFRMLNLSKGPAMWSPRTQNDRMRFAEEWRLALER----TPNVDF 118

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     + N +S +       I    VVLT GTFL GVIHIG+ K   GR G+  +
Sbjct: 119 WQDTVTSLLIKGNTVSGVKTSLGVEIESDAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAA 178

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    +   F+ GR+KTGTP R+DG+++ +   E+Q+ DE+   FS+   K+   Q  
Sbjct: 179 TGLTEQLVTLGFEAGRMKTGTPPRVDGRSLNYTLMEEQWGDEKRGRFSYTDVKLMEEQRC 238

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER+ HQIF+EPEG
Sbjct: 239 CWITYTNNKVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERDRHQIFVEPEG 298

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPE++Q++ +  IPG E V + RPGYAIEYDY  P +L  TLETK 
Sbjct: 299 AHTVEIYVNGFSTSLPEDVQYKALIQIPGFENVRMFRPGYAIEYDYFPPIQLGLTLETKL 358

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           IS LF AGQINGTTGYEEAA+QGL+AGIN+ +K +    +   R++SYIGV+IDDL +KG
Sbjct: 359 ISNLFFAGQINGTTGYEEAASQGLIAGINAHQKVHDKHELIMKRSESYIGVLIDDLVTKG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE----YNFLR 475
             EPYRMFTSRAE+R+ LR DNAD RL+PIG  LG I + R  +  + I       NF++
Sbjct: 419 TEEPYRMFTSRAEHRLLLRQDNADIRLSPIGFNLGLISQERLDKVNQKITNSDVIVNFVK 478

Query: 476 ----------SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
                     SLL+ L  +  N +   +S    G+ +  +  L   D S+ +L +     
Sbjct: 479 NKSIDASDVNSLLEELGTSPLNQNVKMVSLI--GRPQVGFNDLRKVDQSLNDLLA----- 531

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
             + +  +E+ +I+  Y +Y  ++M     +K  E + I  +F+Y  L +LS E +EKL 
Sbjct: 532 -NYDNETVEQAEIKIKYESYFEKEMDIVNRMKKMEDKEINPEFNYHQLVSLSKEAREKLM 590

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            +KP  L QAS+I G++P+ +++L++++ +
Sbjct: 591 RIKPRTLGQASRISGVSPSDISVLMVHVSR 620


>gi|67922566|ref|ZP_00516073.1| Glucose-inhibited division protein A subfamily [Crocosphaera
           watsonii WH 8501]
 gi|67855575|gb|EAM50827.1| Glucose-inhibited division protein A subfamily [Crocosphaera
           watsonii WH 8501]
          Length = 634

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/617 (42%), Positives = 372/617 (60%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  SFDIIVVGAGHSGCEAALAAARLGCCTMMLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +G V
Sbjct: 72  LGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQKNLSIREGMV 131

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  I     +  +   V+LTTGTFL G I IG   + AGR G+  +  L 
Sbjct: 132 TDLVLGKNDEVIGIQTYFGTCFQAKAVILTTGTFLGGRIWIGNKSMEAGRSGEFAAVGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIECGI 242
            +     F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF     +   Q+ C +
Sbjct: 192 ETLNNLGFETGRLKTGTPARVDKRSVDYSRLEPQPPDEEVRWFSFDPAVWVQKEQMNCYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT ++TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG   
Sbjct: 252 TRTTIKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEGREI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE+IQ   +RT+PGLE   ++RP YA+EYD++   + +PTL TKKI G
Sbjct: 312 PELYIQGFSTGLPEKIQLAMLRTLPGLEDCVMLRPAYAVEYDFLPATQCYPTLMTKKIEG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAAAQG+VAGIN+ +     + I F R +SY+G +IDDL +K + E
Sbjct: 372 LFSAGQVNGTTGYEEAAAQGIVAGINAVKFVKNEEMIIFPREESYLGTLIDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +  ++ N +    +   
Sbjct: 432 PYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWNLFEE--KQANIVAEKERLYE 489

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              K      I    D + +     T  + L  P F  ++L        +  ++  E  +
Sbjct: 490 TRIKERDEVGIKIVNDTQQKIKGSVTLADLLRRPKFHYEHLEQYGLGNTELKTVEKEGAE 549

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ I+ ++I     + +P D DY S+  LS E +EKL+ ++P  L QAS+
Sbjct: 550 IDIKYSGYLKRQQIQIEQISRHSNKKLPSDIDYMSIDTLSMEAREKLTKVRPLTLGQASR 609

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LL+Y++
Sbjct: 610 IGGVNPADINALLVYLE 626


>gi|322375109|ref|ZP_08049623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C300]
 gi|321280609|gb|EFX57648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C300]
          Length = 637

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKHELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMQRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++   I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVVFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|94995350|ref|YP_603448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10750]
 gi|166200622|sp|Q1J457|MNMG_STRPF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94548858|gb|ABF38904.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10750]
          Length = 632

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 374/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              + + N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|37520450|ref|NP_923827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gloeobacter violaceus PCC 7421]
 gi|81710866|sp|Q7NM86|MNMG_GLOVI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|35211444|dbj|BAC88822.1| glucose inhibited division protein A [Gloeobacter violaceus PCC
           7421]
          Length = 656

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/611 (42%), Positives = 370/611 (60%), Gaps = 6/611 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GH+GCEAA  AA+LG  T L+T    TI    CNPA+GG  K  LV E+DAL
Sbjct: 38  FDVVVVGAGHSGCEAALAAARLGCRTLLVTMNLDTIAWQPCNPAVGGPAKSQLVHEVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M ++ D   +Q RVLN  +GPAV   R Q D+  Y   +++ + +  NL + QG++ 
Sbjct: 98  GGEMAKITDRTYLQKRVLNSSRGPAVWALRAQTDKREYARELKQVLEATPNLTLRQGQIT 157

Query: 126 GFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             +    + I  +    +    C  V+LTTGTFL G I IG+  + AGR G+  +  L  
Sbjct: 158 DIHLGPHDEICGVGTFFDVHFACRAVILTTGTFLGGRIWIGRKSMSAGRAGEFAAEGLTA 217

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +  +  F+TGRLKTGTPAR+D +T+ +   E Q  D  L  FSF       R Q+ C +T
Sbjct: 218 TLERLGFETGRLKTGTPARVDRRTVDFGVMEVQPPDPELRWFSFDPRAWVEREQLNCYLT 277

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH++I +++  S +YSGDI++ GPRYCPSIEDKIVRF ++  HQIF+EPEG +T 
Sbjct: 278 RTTAATHQVIRDHLHLSPMYSGDIEARGPRYCPSIEDKIVRFADKESHQIFIEPEGRDTP 337

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST+LPE +Q   +RT+PGLE   ++RP YA+EYDY+   + + TL TK++ GL
Sbjct: 338 ELYVQGFSTSLPETVQIAMLRTLPGLEACAVLRPAYAVEYDYLPATQCYATLMTKRVEGL 397

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG+VAGIN+AR       +   R  SYIG +IDDL +K + EP
Sbjct: 398 FCAGQINGTTGYEEAAAQGIVAGINAARLVRGEALVILPREGSYIGTLIDDLVTKEIREP 457

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTP+G ++G + + R   + K I      R  L++  L
Sbjct: 458 YRMLTSRSEYRLVLRSDNADRRLTPLGREIGLVDDERWGLYQKKIAAITCERQRLETTRL 517

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            +++L    +       + T  + L  P     +L S+        + V E ++IE  Y+
Sbjct: 518 NARDL---PVHLAAKPGSITLADLLRRPGLHYGDLESL-NQGVLLDAQVREGVEIEVKYS 573

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  + + +  +  R+IP D DY  L  LS E +EKL+ ++P  + QA +I G+ P
Sbjct: 574 GYIERQNEQIERVSAQHARVIPADLDYERLSTLSKESREKLNRIRPRTIGQAGRIGGVNP 633

Query: 604 AALNLLLIYIK 614
           A ++ LL+Y++
Sbjct: 634 ADVSALLVYLE 644


>gi|307243466|ref|ZP_07525622.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493190|gb|EFM65187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus stomatis DSM 17678]
          Length = 626

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/616 (43%), Positives = 371/616 (60%), Gaps = 7/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A++G  T +IT     + +++CNP+IGG GKG LV+E+DA
Sbjct: 8   SYDVIVVGAGHAGCEAALASARMGMKTLMITLSLDAVAALACNPSIGGTGKGQLVKEVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA  IQ R+LN  KGPAV   R Q D+ LY   M+  I +QENLD+I  EV
Sbjct: 68  LGGQMGLNIDATYIQSRILNTAKGPAVHSLRAQTDKNLYHRVMKETIENQENLDLIMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +  +     +    +L TG +L+  I IG      G  G   +  L  
Sbjct: 128 EEILHEGKRVTGVATRLGCEYKSKATILATGVYLQSTIFIGHDTFKEGPNGLGYAKKLTY 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +   D  R KTGTPAR+   +I +   + Q  DE+++PFSFM + I   QI C +TR
Sbjct: 188 NLKELGLDMRRFKTGTPARVHKDSIDFSVMDPQPGDEKVVPFSFMNENIERDQITCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   T ++I +NI  SA+YSG+I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL+T  
Sbjct: 248 TTPATKKLIEDNITRSAMYSGNIEGTGPRYCPSIEDKIVKFNDKETHQLFIEPEGLDTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+ P ++Q +  R+I GLE V ++RP YAIEYD INP +L   LE K +  LF
Sbjct: 308 MYIQGVSTSFPLDMQVKMYRSIKGLENVRLMRPAYAIEYDCINPTQLKQNLEIKGLENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+ GIN+  K    + +   R+D YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLIVGINAVLKIRGQEALILDRSDGYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R  RF K   + +     LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTQKGYDIGLVSQERYDRFLKKKADVDAEIERLKNDRIT 487

Query: 485 SKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIE 539
            K     L    I    +G   + YEFL  P+ +   L  +   + K  S  V ++  I 
Sbjct: 488 PKEINPILEERGIVGLNNG--LSLYEFLKRPEINYSLLEEVGKGSDKDLSDEVKDQAVIM 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +QM +  + +  EK+ +  D DY  +  L  E ++KL+ +KP ++ QAS+I 
Sbjct: 546 IKYEGYISKQMKQIDQFRKLEKKKLNPDLDYDEIDGLRIEARQKLNAIKPTSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 606 GVSPADISVLLIYLEQ 621


>gi|50915202|ref|YP_061174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10394]
 gi|68052091|sp|Q5X9C2|MNMG_STRP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50904276|gb|AAT87991.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10394]
          Length = 632

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKSELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              + + N     + FK       A EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMIAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|168487076|ref|ZP_02711584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570028|gb|EDT90556.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1087-00]
          Length = 637

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A +    +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|317181522|dbj|BAJ59306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F57]
          Length = 621

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 280/627 (44%), Positives = 373/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +
Sbjct: 1   MVKES-DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTK 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V 
Sbjct: 60  EVDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SN
Sbjct: 120 QEMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASN 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C
Sbjct: 180 SLALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +
Sbjct: 240 FITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTI 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI
Sbjct: 300 HKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YI V+IDDL +KG 
Sbjct: 360 KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYISVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK 
Sbjct: 420 NEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKE 479

Query: 481 LVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            VLT           L    I+ K DG +      L+   F+ + + S        +  V
Sbjct: 480 CVLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNPEKMRSFFSFLTPLNERV 534

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L
Sbjct: 535 LEQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSL 594

Query: 593 LQASKIEGMTPAALNLLLIYI--KKNT 617
            +AS+I G+TPA L++L +YI  +KN+
Sbjct: 595 FEASEISGITPANLDVLHLYIHLRKNS 621


>gi|227550630|ref|ZP_03980679.1| glucose-inhibited division protein A [Enterococcus faecium TX1330]
 gi|257896277|ref|ZP_05675930.1| glucose-inhibited division protein A [Enterococcus faecium Com12]
 gi|293379358|ref|ZP_06625502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium PC4.1]
 gi|227180231|gb|EEI61203.1| glucose-inhibited division protein A [Enterococcus faecium TX1330]
 gi|257832842|gb|EEV59263.1| glucose-inhibited division protein A [Enterococcus faecium Com12]
 gi|292641881|gb|EFF60047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium PC4.1]
          Length = 633

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/621 (43%), Positives = 381/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTQMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGICHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKQRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +  +L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQAFLATINAAPLKDGV--LASDFLRRPEITYADLLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|2258459|gb|AAB63296.1| GidA [Helicobacter pylori]
          Length = 621

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/621 (44%), Positives = 371/621 (59%), Gaps = 15/621 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E+D L 
Sbjct: 6   DILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q     
Sbjct: 66  GAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEMTES 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNSL  + 
Sbjct: 126 LILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNSLALNL 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C IT TN
Sbjct: 186 RELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSCFITYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++ +  Y
Sbjct: 246 PITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKNEYY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI GL+LA
Sbjct: 306 INGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIKGLYLA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAA QGL+AGIN+             R ++YIGV+IDDL +KG  EPYRM
Sbjct: 366 GQINGTTGYEEAADQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTNEPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           FTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK  VLT  
Sbjct: 426 FTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQDNLKRLKECVLTPS 485

Query: 486 -------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                    L    I+ K +G +      L+   F+ + + S        +  V+E+++I
Sbjct: 486 KKLLKRLNELDENPINDKVNGVS-----LLARDSFNAEKMRSFFSFLAPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPAALNLLLIYI--KKNT 617
            G+TPA L++L +YI  +KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|324991890|gb|EGC23813.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK405]
 gi|324996220|gb|EGC28130.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK678]
 gi|327458515|gb|EGF04865.1| glucose inhibited division protein A [Streptococcus sanguinis SK1]
          Length = 659

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/626 (41%), Positives = 381/626 (60%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+   Q++   I P A + 
Sbjct: 502 NEMKRLESIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVYYQDVVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|322388411|ref|ZP_08062014.1| glucose inhibited division protein A [Streptococcus infantis ATCC
           700779]
 gi|321140724|gb|EFX36226.1| glucose inhibited division protein A [Streptococcus infantis ATCC
           700779]
          Length = 638

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 374/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGIEIGRFKTGTPPRVKASSINYDVTEIQPGDETPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|238018229|ref|ZP_04598655.1| hypothetical protein VEIDISOL_00053 [Veillonella dispar ATCC 17748]
 gi|237864700|gb|EEP65990.1| hypothetical protein VEIDISOL_00053 [Veillonella dispar ATCC 17748]
          Length = 623

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/620 (43%), Positives = 385/620 (62%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  AA++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALAAARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ I + ENL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTIENTENLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         VVL TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVVLCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +  E Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMEVQEGDTHHHSFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIITSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGRAIGLV---KDDRWAKFTAKKAAIEEAMDMLRNT 482

Query: 485 SKNLSSTSISFKQDGKT---RT---AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  + +  +   T   RT   AY+ +   + S    ++I  DA   ++++  V E 
Sbjct: 483 PVNPSKETQALLESLGTAPIRTGIHAYDLVKRNELS----YAIVADAFGLKRYTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 VDISITYEGYIKKQMDQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|332202055|gb|EGJ16124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA41317]
          Length = 637

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMIN 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A +    +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|328945149|gb|EGG39304.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1087]
          Length = 659

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 381/626 (60%), Gaps = 26/626 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q   
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ--- 148

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                   +I+ I+++D  +I   T          V++TTGT LRG I IG LK  +G  
Sbjct: 149 -------TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPN 201

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               +  L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  + 
Sbjct: 202 HSLAAIPLADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDED 261

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 262 YVKDQVPCWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQ 321

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L 
Sbjct: 322 LFLEPEGRDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLR 381

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETKKISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMI
Sbjct: 382 ATLETKKISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMI 441

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++
Sbjct: 442 DDLVTKGTVEPYRLLTSRAEYRLILRHDNADIRLTEMGREIGLVDDERWARFEIKKNQFD 501

Query: 473 FLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
                L+S+ L      N    ++ FK      TA EF+  P+ S ++    I P A + 
Sbjct: 502 NEMKRLESIKLKPIKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYKDAVQFIGPAAEEL 561

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 562 DEKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 621

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QAS+I G+ PA +++L++Y++
Sbjct: 622 PETIGQASRISGVNPADISILMVYLE 647


>gi|322378088|ref|ZP_08052574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. M334]
 gi|321280925|gb|EFX57939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. M334]
          Length = 637

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G  +G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGRDIGLVDDERWSRFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|222153938|ref|YP_002563115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus uberis 0140J]
 gi|222114751|emb|CAR43905.1| glucose inhibited division protein A [Streptococcus uberis 0140J]
          Length = 633

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/617 (42%), Positives = 375/617 (60%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAG EA+  AA++G  T L T     +  M CNP+IGG  KG +VREIDAL
Sbjct: 9   YDVVVIGAGHAGVEASLAAARMGCKTLLATINIDMLAFMPCNPSIGGSAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q  + 
Sbjct: 69  GGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKNLYAREMKHTVEKQENLTLRQSIID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L ++
Sbjct: 129 DILVEDGKVVGVLTATGQKFSARAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K   + GR KTGTP R+   +I +D+TE Q  D +   FSF++  +     QI C +T
Sbjct: 189 LKKLGLEIGRFKTGTPPRVKASSINYDETEIQPGDPKPNHFSFLSKDEDYLQEQIPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T+
Sbjct: 249 YTNQTSHDIITKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK ISGL
Sbjct: 309 EVYVQGLSTSLPEDVQKELLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LEP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG  +G + ++R + F     +++     L+S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEIGRTVGLVDDQRWETFQIKKNQFDTEMRRLESIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N    ++ FK      TA EF+  P+     + + I   A      +IE L+ E
Sbjct: 489 KPIKETNERVQALGFKPLTDAMTAKEFMRRPEIDYATVVTFIGQAAETLDPKIIELLETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QAS+I 
Sbjct: 549 IKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIKKN 616
           G+ PA +++L++YI+ N
Sbjct: 609 GVNPADISILMVYIEGN 625


>gi|294794210|ref|ZP_06759346.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 3_1_44]
 gi|294454540|gb|EFG22913.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 3_1_44]
          Length = 623

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 382/620 (61%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         ++L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAIILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  D    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLDNMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++  +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREISLV---KDDRWAKFTAKKAAIEEAMDMLRNT 482

Query: 485 SKNLSSTSISFKQDGKTRT------AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  + +  +   T +      AY+ +   + S    ++I  DA   ++++  V E 
Sbjct: 483 PVNPSKETQALLESLGTASIKTGIHAYDLVKRNELS----YAIVADAFGLKRYTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 VDISITYEGYIKKQMEQVDKVRKLEEKILPKEWDYAQIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|313889485|ref|ZP_07823131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122097|gb|EFR45190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 633

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EA+   A++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGVEASLATARMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  + +QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKHTVENQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G LK  +G      S +L +
Sbjct: 128 DDILVEDGQVVGVLTATGQKFSAKAVVVTTGTALRGEIILGDLKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  K   + GR KTGTP R+   +I + +TE Q  D++   FSFM+  +     Q+ C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSIDYSETEIQPGDDKPNHFSFMSKDEDYLKDQVPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQNSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRHT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKELLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G +   R   F AK  Q    LR L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDNERWSAFEAKKKQFEKELRRLDSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQI 538
              +   N    ++ FK      TA EF+  P+       S    A     + VIE L+ 
Sbjct: 488 LKPIRETNEKVEALGFKPLTDAMTAKEFMRRPEIDYATAISFIGSADENLDTKVIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L++YI+ N
Sbjct: 608 SGVNPADISILMVYIEGN 625


>gi|315172074|gb|EFU16091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1342]
          Length = 632

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/625 (43%), Positives = 385/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +   S VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDSKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|116493569|ref|YP_805304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus pentosaceus ATCC 25745]
 gi|122264967|sp|Q03D60|MNMG_PEDPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116103719|gb|ABJ68862.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Pediococcus pentosaceus ATCC 25745]
          Length = 637

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/630 (43%), Positives = 378/630 (60%), Gaps = 22/630 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KG +VREID
Sbjct: 10  REYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M++ I ++ NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +  +  +VVLT GT  RG I IG+L+  +G     P+NS  
Sbjct: 130 VDDLIVEDGVCKGVITNTGARYQAKSVVLTLGTAARGKIIIGELQYSSG-----PNNSQA 184

Query: 184 ------NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
                 N   K+ FD  R KTGTP R+DG TI +D+TE+Q  DE    FSF T       
Sbjct: 185 ALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDSKYIE 244

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN +TH II EN+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+
Sbjct: 245 LKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKSRHQL 304

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG  TD  Y  G+ST++PEE+Q Q + +I GLE+  ++RPGYAIEYD + P +L  
Sbjct: 305 FLEPEGRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPYQLKN 364

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK +  L+ AGQ NGT+GYEEAA QGL+AGIN+ R++   + +   R+D+YIGVMID
Sbjct: 365 TLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKEPLTLKRSDAYIGVMID 424

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ---- 469
           DL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G  LG + +     F +  Q    
Sbjct: 425 DLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQDIKD 484

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
           E   L  +        K L S   +  +DG    A EFL  P+ +  +L   I    +  
Sbjct: 485 ELQRLSEIRIKPSQVQKFLESKGSNGLKDGV--LASEFLRRPEVNYSDLLKFIDAPEKDL 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              VIE+++IE+ YA Y  +       +K  E++ IP   DY ++  L+ E ++KL  ++
Sbjct: 543 DRRVIEQVEIETKYAGYIKKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEKIR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           P  + QAS+I G+TPA + +L +YI++  +
Sbjct: 603 PTTIAQASRISGVTPADIAILSVYIQQGKI 632


>gi|307710238|ref|ZP_07646681.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK564]
 gi|307619000|gb|EFN98133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK564]
          Length = 637

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 373/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|238878791|gb|EEQ42429.1| hypothetical protein CAWG_00640 [Candida albicans WO-1]
          Length = 695

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/632 (41%), Positives = 387/632 (61%), Gaps = 30/632 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  HPVIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V 
Sbjct: 98  DGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVE 157

Query: 126 GF-------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                            E   +  +++ D  +++   VV+TTGTFL G IHIG    P+G
Sbjct: 158 DIIIKPVLSNREDFSGREFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK
Sbjct: 218 RMGEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTINFKGLIEQPSDFPPQPMSYMNDK 277

Query: 233 I--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   ++ ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ 
Sbjct: 278 VYLEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDY 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+E
Sbjct: 336 HYVWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK ++GL+LAGQINGTTGYEEAAAQG +AGIN+     +   +   R D  + +
Sbjct: 396 LKSTLETKLVNGLYLAGQINGTTGYEEAAAQGCIAGINAGLSYLQKPLLELKRPDGLVAI 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL +KGV EPYRMFTSR+E+R S+R DNAD+RLT  G +LG + E R + F K   +
Sbjct: 456 LIDDLITKGVEEPYRMFTSRSEFRFSIRSDNADDRLTQKGYELGVVSEERYQFFKKEADQ 515

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLF-------- 519
           +  +++ L  L L+ K  +      K D +     + ++ LSYP  SI ++         
Sbjct: 516 FKDIKNALSELKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINDILPHMSHFMT 575

Query: 520 SICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--S 577
            + P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S
Sbjct: 576 QVPPCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKIS 635

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           +E+   L+I++P  + QA  ++G+TP A+N L
Sbjct: 636 HEVCTILNIVQPTTIGQAQSLQGITPTAINEL 667


>gi|332519444|ref|ZP_08395911.1| glucose inhibited division protein A [Lacinutrix algicola 5H-3-7-4]
 gi|332045292|gb|EGI81485.1| glucose inhibited division protein A [Lacinutrix algicola 5H-3-7-4]
          Length = 623

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/637 (43%), Positives = 388/637 (60%), Gaps = 36/637 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA AA +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNEVYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR    E +RL +++     +N
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLEQ----TQN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V+G   E   +  +       ++  +VVLT GTFL G+IHIG      GR G+
Sbjct: 117 LDFYQEMVSGLVVENGKVVGVKTSLGITVKAKSVVLTNGTFLNGLIHIGDKNFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITN 235
             +  +    ++  F++GR+KTGTP R+DG+++ + K  +Q  D     FS++ T K   
Sbjct: 177 RAATGITEQLIELGFESGRMKTGTPPRVDGRSLDYSKMIEQPGDLNPEKFSYLDTTKPLE 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q  C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+
Sbjct: 237 NQRSCFMTYTSEKVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFV 296

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  +Y NG ST+LPE++Q   +R++ G E V   RPGYAIEYDY  P +L  TL
Sbjct: 297 EPEGWNTVEMYINGFSTSLPEDVQFNALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTL 356

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GL+ AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL
Sbjct: 357 ETKLVDGLYFAGQINGTTGYEEAASQGLMAGINAALKVQEKDSFILQRNEAYIGVLIDDL 416

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAEYR  LR DNAD RLTP G  LG   E+R KR  + +   N   
Sbjct: 417 ITKGTEEPYRMFTSRAEYRTLLRQDNADIRLTPRGYDLGLASEKRLKRMEEKLNASNQFV 476

Query: 476 SLLKSLVLTSKNL-----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
              K   +T+ +      S  S S KQ GK    ++  + P+  +        D RKF  
Sbjct: 477 QFFKDTSVTANDANVVLESKNSASVKQQGKM---FKLFARPNIDMD-------DMRKFEK 526

Query: 531 L------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
           +            V+E+ +I+  YA Y  ++   A ++   E   IP +F+YS L ++S 
Sbjct: 527 VETYIQENNLDREVLEQAEIQVKYAGYISKEKNNADKLNRLENIKIPANFNYSQLKSMSL 586

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           E +EKL+ ++P  + QAS+I G++PA +++LL+++ +
Sbjct: 587 EAREKLNKIQPVTISQASRISGVSPADISVLLVFMGR 623


>gi|166032900|ref|ZP_02235729.1| hypothetical protein DORFOR_02621 [Dorea formicigenerans ATCC
           27755]
 gi|166027257|gb|EDR46014.1| hypothetical protein DORFOR_02621 [Dorea formicigenerans ATCC
           27755]
          Length = 640

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/626 (43%), Positives = 383/626 (61%), Gaps = 21/626 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ VIG GHAGCEAA  AA++G  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 15  YDIAVIGAGHAGCEAALAAARMGFKTVVFTVSVESIAMMPCNPNIGGSSKGHLVKEVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+E Y   M+R + +QENLDV Q EV 
Sbjct: 75  GGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKEQYSRTMRRVLENQENLDVRQTEVV 134

Query: 126 GFNTE------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
              TE      K  +  + +    + R   VVL TGT+LR     G++    G  G   +
Sbjct: 135 NILTEEVCESGKKKVIGVQILSGGIYRVKAVVLCTGTYLRARCVYGEVSNATGPNGLQAA 194

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQ 237
           N L         +  R KTGTPAR+D ++I ++K E Q+ DER+ PFSF T  D I   Q
Sbjct: 195 NHLTECLKNLGINMYRFKTGTPARIDKRSIDFNKMEAQYGDERITPFSFTTNPDDIQIDQ 254

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EP
Sbjct: 255 VPCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEP 314

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG++T+ +Y  G+S++LPE++Q+   R++ GLE   I+R  YAIEYD I+ ++L P+LE 
Sbjct: 315 EGIDTNEMYIGGMSSSLPEDVQYDMYRSVAGLEHAKIVRNAYAIEYDCIDARQLKPSLEF 374

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           ++I GLF  GQ NG++GYEEAA QGL+AGIN+ARK  K + +   R+ +YIGV+IDDL +
Sbjct: 375 REIEGLFSGGQFNGSSGYEEAACQGLIAGINAARKLQKKEAVVLDRSQAYIGVLIDDLVT 434

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQEYNFL 474
           K   EPYRM TSRAEYR+ LR DNAD RLT IG ++G I + R +R     K I+E   +
Sbjct: 435 KESHEPYRMMTSRAEYRLLLRQDNADQRLTEIGYEIGLISQDRYERLKLKEKLIEEE--V 492

Query: 475 RSLLKSLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDAR-----K 527
             +    V TS+ + +    ++        +  E +  P+ + Q L +I  +AR      
Sbjct: 493 SRVEHVHVGTSEKVQNLLAQYQSTPLNSGISLAELIRRPELTYQVLTTI-DEARPEFPKD 551

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            S  V E++ I   Y  Y  RQ  + ++ K  E + IP++ DY  + +L  E  +KL   
Sbjct: 552 LSEEVSEQVNISIKYDGYIKRQKKQVEQFKKLENKKIPENIDYDQVKSLRIEAVQKLKEF 611

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P ++ QAS+I G++PA +++LL+Y+
Sbjct: 612 RPVSIGQASRISGVSPADISVLLVYL 637


>gi|269123717|ref|YP_003306294.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
 gi|268315043|gb|ACZ01417.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
          Length = 635

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/634 (42%), Positives = 403/634 (63%), Gaps = 27/634 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDV+VIG GHAG EAA  +A+LG  TA+ T     IG MSCNP++GG  K HLV+E
Sbjct: 1   MDNKYDVLVIGAGHAGIEAALASARLGLKTAMFTITLDNIGVMSCNPSLGGPAKSHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + +Q R+LN KKGPAVR  R+QADR++Y   M++ + +QENLDVIQ
Sbjct: 61  LDALGGQMSKTIDKSFVQIRILNTKKGPAVRSLRSQADRKIYARNMKKIVENQENLDVIQ 120

Query: 122 GEVAGFNTEKNIISSIVM-----QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
             V     EK+ I   V+     ++       +V++ +GTFL G++++G   I  GRMG+
Sbjct: 121 DIVTELIYEKDEIKDFVVRGIKTKNGLEFLAKSVIICSGTFLNGLLYVGDKIIEGGRMGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT-DKI- 233
             +  L +S +    D  R KTGT  R+D +TI +D  E+Q  +  ++I FS  T D++ 
Sbjct: 181 LSAKDLTSSLVDMGLDIRRFKTGTSPRIDARTINFDILEEQPGEMSKVIKFSNSTPDEVI 240

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGH 291
              +Q+ C ITRTNL+ H+II +N+  S +++G IK S GPRYCPSIEDK+V+F +++ H
Sbjct: 241 RNTKQLSCYITRTNLDLHKIIKDNLNRSPLFNGTIKDSVGPRYCPSIEDKVVKFNDKDSH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            +FLEPEG +T+ VY +G+ST+ P ++Q + +R I GLE   I+R GYA+EYD++NP EL
Sbjct: 301 HLFLEPEGFDTNEVYISGLSTSYPADLQQKMVRQIEGLENARIMRYGYAVEYDFVNPNEL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETKK+ GL+LAGQINGT+GYEEAA QGL+AGIN++      + +   R +SYI  +
Sbjct: 361 EYTLETKKVKGLYLAGQINGTSGYEEAAVQGLIAGINASLAIKGEEPLLLERNNSYIATL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +K + EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E     ++K +++ 
Sbjct: 421 IDDLITKEIEEPYRMFTARSEYRLILREDNADLRLSHIGYRIGLVDE---STYSKVLEKL 477

Query: 472 NFLRSLLKSLVLTSKNLSSTSIS--FKQDGKT----RTAYEFLSYPDFSIQNLFSICPDA 525
           N +   +K L  T   +S+  +    +++ +T     T  E L  P F+  ++  I  D 
Sbjct: 478 NNVEKTIKVLENTKLGVSNKKLVEILEKNNETLKSGTTLKELLRRPSFTYDDIKYIAEDI 537

Query: 526 RK----FSSLVIERLQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
                 F      +++++  Y  Y  +   MIE K+ K EEK +IP + ++  +  ++ E
Sbjct: 538 EMENICFDEETEYQIEVQIKYEGYINKANAMIE-KQRKLEEK-IIPSELNFLEMKGITGE 595

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            K+KL+  KP  + QAS+I G+TPA ++++L+Y+
Sbjct: 596 AKQKLNERKPHTVGQASRIAGVTPADISVILMYL 629


>gi|255536701|ref|YP_003097072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342897|gb|ACU09010.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Flavobacteriaceae bacterium 3519-10]
          Length = 620

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/620 (44%), Positives = 377/620 (60%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI+  YDVIV+G GHAG EAAA AA +G+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MISEIYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNMQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G +AD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIIADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRIALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +  +V      IR  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKSLIIENNKVCGVVTSLGIQIRGKSVVLTNGTFLNGLIHVGDKQLGGGRMGEPRAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+       +Q+ C
Sbjct: 181 GITEQLVSLGFEAGRMKTGTPPRVDGRSLDYSKMEEQKGDENPQKFSYSDTPTLTKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN   H I+ E    S +++G I+S GPRYCPSIEDK+ RF ER  HQ+F+EPEG 
Sbjct: 241 HIVYTNETVHEILKEGFDRSPMFNGTIQSIGPRYCPSIEDKVNRFAERTRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE++Q + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 RTVEIYVNGFSSSLPEDVQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLHHTLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K  + +     R ++YIGV+IDDL +KG 
Sbjct: 361 ENLYFAGQINGTTGYEEAAGQGLMAGINAHNKVKEKEEFILKRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT     +G   E R K     I + + L   L+ 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADVRLTEKSFNIGLADEHRLKNVQNKIAQGSELEGFLRE 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS---ICPDARKFSSLVIER 535
             L     N     I      +   A + L+ P+ ++Q L     I   + +FS  V E+
Sbjct: 481 TSLKPGIINPILAEIESAPVDQAYKASQILTRPNMTLQKLEQIDFIKERSSEFSDEVKEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFD+  + +LS E ++KL+ ++P  + QA
Sbjct: 541 AEINIKYKGYIDKERESVAKMTRLETIAIPEDFDFCKINSLSAESRQKLNKVRPRTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
            +I G++PA +N+LLIY+ +
Sbjct: 601 GRISGVSPADMNVLLIYLGR 620


>gi|313887617|ref|ZP_07821299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846226|gb|EFR33605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 634

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/623 (43%), Positives = 380/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +VIG GHAG EAA  +A+LGA T L+     ++  +SCNP IGG GKGHLVREIDAL
Sbjct: 12  FDTVVIGAGHAGSEAALASARLGAKTLLLCINLDSVAQLSCNPNIGGTGKGHLVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAV   R QAD+  Y   M+R + ++ENL +++ E  
Sbjct: 72  GGEMAKNIDKTFIQSKMLNTSKGPAVHSLRVQADKRKYHDEMKRVLENEENLYLVEDEAI 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ ++ ++ S      VV+ +GT+LR  I +G++   +G  G  P+N L +S
Sbjct: 132 RILKEGNKVTGVLTRNGSKYNTKAVVICSGTYLRARIFMGEVNFSSGPSGFGPANHLSSS 191

Query: 186 FMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
             + F     RLKTGTPAR+  K+I +    +Q  DE +IPFSF+    K    Q  C +
Sbjct: 192 LEEDFGMKLQRLKTGTPARVLRKSIDFSVMTEQAGDEEIIPFSFLNIDKKYDIHQELCYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  + H II  NI+ SA+  GDI+  GPRYCPSIEDK++RF +R+ HQ+F+EPEGL T
Sbjct: 252 TYTTKKCHEIIRNNIERSALALGDIEGKGPRYCPSIEDKVMRFADRDSHQVFIEPEGLTT 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+S++LP E+QH+F + I G+E   I+RP YAIEYD I+   L  +LE     G
Sbjct: 312 DEMYIQGVSSSLPVEVQHEFYKEIIGMENCKILRPAYAIEYDAIDATLLKRSLEHMDYDG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQING++GYEEA AQG+VAGIN+A K    D     R+++YIGV+IDDL +KG  E
Sbjct: 372 LFFAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPFILDRSEAYIGVLIDDLVTKGTRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----------AKYIQEYN 472
           PYRM TSRAEYR++LR DNAD RLT  G ++G + + R + +           K I++  
Sbjct: 432 PYRMMTSRAEYRLTLRQDNADLRLTEKGRQIGLVDDERYQGYLYRKKAIEDEIKRIKKIQ 491

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              +   + +L S   + T  SF       + YE +  P+F  + L    PD       V
Sbjct: 492 INPTAENNKILESLGSTETQNSF-------SLYEMIKRPEFDYKKLAVFDPDRPLVRDDV 544

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           I  ++IE  Y  Y  +Q I+ K+ K  E + + K+ DY S+  L  E KEKLS ++P ++
Sbjct: 545 IRNIEIEIKYEGYIKKQEIQIKQFKKLENKKLDKNIDYKSIEGLRIEAKEKLSDIRPESI 604

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +N+LLI++++
Sbjct: 605 GQASRITGVSPADINVLLIHLEQ 627


>gi|182683093|ref|YP_001834840.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
 gi|182628427|gb|ACB89375.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKIVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMDFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|289168788|ref|YP_003447057.1| NAD/FAD-binding enzyme GidA [Streptococcus mitis B6]
 gi|288908355|emb|CBJ23197.1| NAD/FAD-binding enzyme GidA [Streptococcus mitis B6]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|307707800|ref|ZP_07644277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis NCTC 12261]
 gi|307616060|gb|EFN95256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis NCTC 12261]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|169833429|ref|YP_001693656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Hungary19A-6]
 gi|205831573|sp|B1I835|MNMG_STRPI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168995931|gb|ACA36543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWTRFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|257124927|ref|YP_003163041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia buccalis C-1013-b]
 gi|257048866|gb|ACV38050.1| glucose inhibited division protein A [Leptotrichia buccalis
           C-1013-b]
          Length = 640

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/642 (41%), Positives = 398/642 (61%), Gaps = 40/642 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDVIV+G GHAG EAA  +A+LG  TA+ T     IG MSCNP++GG  K HL +E+D
Sbjct: 2   RNYDVIVVGAGHAGIEAALASARLGLKTAVFTITLDNIGVMSCNPSVGGPAKSHLAKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y   M++ I +Q+NLD +Q  
Sbjct: 62  ALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIYAREMKKTIENQQNLDTVQDI 121

Query: 124 VAGFNTEK------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     E+             +I  I  +         VVL TGTFLRG+++IG  ++  
Sbjct: 122 VTELIVEEIEILEGNSKRIEKVIKGIRTKTGMEFFAKAVVLATGTFLRGLLYIGDKRVKG 181

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ--FADERLIPFSFM 229
           GRMG+  ++ L +S     F   R KTGTP RLD +T+  +K E+Q    D   IP  F 
Sbjct: 182 GRMGELSADDLTDSLKSLGFKMDRFKTGTPPRLDIRTLNLEKLEEQPGITD---IPLKFS 238

Query: 230 ----TDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                D++  + Q+ C +TRTN  TH+II++N+  + +Y+G I S GPRYCPSIEDK+V+
Sbjct: 239 MRTPNDEVLEKPQLSCYLTRTNETTHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVK 298

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +++ H +FLEPEG +T  VY +G+ST+ P  +Q + + TI GLE  +I+R GYA+EYD
Sbjct: 299 FNDKDSHHLFLEPEGFDTAEVYISGLSTSYPASLQQKIVNTIEGLENAHIMRYGYAVEYD 358

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
            ++P EL  TLET+K+ GL+L+GQ+NGT+GYEEAAAQG++AGIN+A K    +     R 
Sbjct: 359 IVDPSELDYTLETRKVKGLYLSGQLNGTSGYEEAAAQGIIAGINAALKIKGQEPFILDRE 418

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIG MIDDL +K + EPYRMFT+R+E+R+ LR DNAD RL+    K+G +     K++
Sbjct: 419 SSYIGTMIDDLINKELFEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLL----DKKY 474

Query: 465 AKYIQE--YNFLRSL--LKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQN 517
              +QE   N  +++  L+++ L S N     I  K +   +   T  E L  P  + Q+
Sbjct: 475 YDIVQEKKKNVKKTIENLENIKLGSSNQRLMEILDKYNESLKSGTTLKEILRRPKVTYQD 534

Query: 518 LFSICPDARKFSSLVIE-----RLQIESSYAAYTGRQM-IEAKEIKFEEKRLIPKDFDYS 571
           +  I        +L  +     ++++++ Y  Y  + + I  K+ K ++K+ IPK+FDY 
Sbjct: 535 IKYIAEIIENVPNLNFDDETEYQIEVQTKYEGYIAKAIQIMEKQQKLDDKK-IPKNFDYD 593

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           S+  ++ E K++L   +P+N+ QAS++ G+TPA +++LL+Y+
Sbjct: 594 SMKGITREAKQRLKENRPYNVGQASRMSGVTPADISVLLMYL 635


>gi|148987862|ref|ZP_01819325.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926326|gb|EDK77399.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP6-BS73]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGRPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLGSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|148992710|ref|ZP_01822353.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489389|ref|ZP_02713588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP195]
 gi|194397114|ref|YP_002036840.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae G54]
 gi|225853751|ref|YP_002735263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae JJA]
 gi|303255167|ref|ZP_07341243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS455]
 gi|303259177|ref|ZP_07345155.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP-BS293]
 gi|303260934|ref|ZP_07346883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263260|ref|ZP_07349183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS397]
 gi|303265425|ref|ZP_07351325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS457]
 gi|303269622|ref|ZP_07355381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS458]
 gi|307126355|ref|YP_003878386.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 670-6B]
 gi|147928436|gb|EDK79451.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572125|gb|EDT92653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP195]
 gi|194356781|gb|ACF55229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (glucose-inhibited division protein A) [Streptococcus
           pneumoniae G54]
 gi|225722589|gb|ACO18442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae JJA]
 gi|301801086|emb|CBW33754.1| glucose inhibited division protein A [Streptococcus pneumoniae
           INV200]
 gi|302597997|gb|EFL65067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS455]
 gi|302637771|gb|EFL68257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP14-BS292]
 gi|302639595|gb|EFL70052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP-BS293]
 gi|302640824|gb|EFL71212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS458]
 gi|302644865|gb|EFL75112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS457]
 gi|302647033|gb|EFL77257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS397]
 gi|306483417|gb|ADM90286.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 670-6B]
 gi|332075802|gb|EGI86269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA17570]
 gi|332077434|gb|EGI87895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA41301]
          Length = 637

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|16331425|ref|NP_442153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechocystis sp. PCC 6803]
 gi|2494736|sp|Q55694|MNMG_SYNY3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1001595|dbj|BAA10223.1| glucose inhibited division protein A [Synechocystis sp. PCC 6803]
          Length = 635

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/636 (41%), Positives = 377/636 (59%), Gaps = 47/636 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  QFDVIVVGAGHAGCEAALATARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN+ +GPAV   R Q D+  Y   M+  + +Q NL + +G  
Sbjct: 72  LGGEIGKMADRTYLQKRVLNISRGPAVWALRAQTDKREYAAVMKNIVENQPNLSIREG-- 129

Query: 125 AGFNTEKNIISSIVMQDNSMIR-----------CSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                   +++ +V+ DN  I+             +VV+TTGTFL G I IG   +PAGR
Sbjct: 130 --------MVTDLVLGDNDEIQGVQTYFGACFGAQSVVITTGTFLGGKIWIGNKSMPAGR 181

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            G+  +  L  +  +  F+TGRLKTGTPAR+D +++ +DK E Q  DE++  FSF  +  
Sbjct: 182 AGEFAAVGLTETLNELGFETGRLKTGTPARVDRRSVDYDKLEPQPPDEQVSWFSFDPEVW 241

Query: 234 TNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             R Q+ C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQ
Sbjct: 242 VEREQMNCYLTRTTAKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQ 301

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IF+EPEG +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYD++   + +
Sbjct: 302 IFIEPEGRDIPELYIQGFSTGLPENVQLAMLQTLPGLENCVMLRPAYAVEYDFLPATQCY 361

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+L TKK++GLF AGQINGTTGYEEAAAQGLVAGIN+AR       I FSR  SY+G +I
Sbjct: 362 PSLMTKKVAGLFCAGQINGTTGYEEAAAQGLVAGINAARHCQGKSLIIFSREGSYLGTLI 421

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +K + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR          ++
Sbjct: 422 DDLCTKDLREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRR----------WD 471

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQD--GKTRTAY------------EFLSYPDFSIQNL 518
             ++   ++    + L ST I  +QD  GK    Y            E L  P F   +L
Sbjct: 472 LFQTKQANITAEKERLYSTRIK-EQDAVGKEIVDYTQQKIKGSIVLAELLRRPGFHYPDL 530

Query: 519 FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                   +        ++IE  Y+ Y  RQ  + +++    ++ +P   +Y ++  LS 
Sbjct: 531 EKFQLGNEELKPEEKTSVEIEIKYSGYIKRQQTQIEQVSRHSQKRLPPGLNYMAIETLSM 590

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           E +EKL+  +P  + QA +I G+ PA +N LL+Y++
Sbjct: 591 EAREKLTQFQPLTIGQAGRIGGVNPADINALLVYLE 626


>gi|68476591|ref|XP_717588.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|68476740|ref|XP_717515.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46439229|gb|EAK98549.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46439305|gb|EAK98624.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
          Length = 695

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/632 (41%), Positives = 387/632 (61%), Gaps = 30/632 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  HPVIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V 
Sbjct: 98  DGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVE 157

Query: 126 GF-------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                            E   +  +++ D  +++   VV+TTGTFL G IHIG    P+G
Sbjct: 158 DIIIKPVLSNGEDFSGREFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK
Sbjct: 218 RMGEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTINFKGLIEQPSDFPPQPMSYMNDK 277

Query: 233 I--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   ++ ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ 
Sbjct: 278 VYLEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDY 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+E
Sbjct: 336 HYVWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK ++GL+LAGQINGTTGYEEAAAQG +AGIN+     +   +   R D  + +
Sbjct: 396 LKSTLETKLVNGLYLAGQINGTTGYEEAAAQGCIAGINAGLSYLQKPLLELKRPDGLVAI 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL +KGV EPYRMFTSR+E+R S+R DNAD+RLT  G +LG + E R + F K   +
Sbjct: 456 LIDDLITKGVEEPYRMFTSRSEFRFSIRSDNADDRLTQKGYELGVVSEERYQFFKKEADQ 515

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLF-------- 519
           +  +++ L  L L+ K  +      K D +     + ++ LSYP  SI ++         
Sbjct: 516 FKDIKNALSVLKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINDILPHMSHFMT 575

Query: 520 SICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--S 577
            + P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S
Sbjct: 576 QVPPCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKIS 635

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           +E+   L+I++P  + QA  ++G+TP A+N L
Sbjct: 636 HEVCTILNIVQPTTIGQAQSLQGITPTAINEL 667


>gi|270291930|ref|ZP_06198145.1| glucose-inhibited division protein A [Streptococcus sp. M143]
 gi|270279458|gb|EFA25300.1| glucose-inhibited division protein A [Streptococcus sp. M143]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGRVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|239624143|ref|ZP_04667174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520529|gb|EEQ60395.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 625

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/622 (42%), Positives = 383/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+IV+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLVRE
Sbjct: 4   LEETYDMIVVGAGHAGCEAALAGARLGLETIMFTVSVDSIALMPCNPNVGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + ++L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQDYSRQMRRTLENTDHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    ++  I  +     ++ R   V+L TGT+L+     G +  P G  G   +N 
Sbjct: 124 AEVSELVVQEGEIRGVKTFSGAVYRGKCVILCTGTYLKARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+Q  DE ++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKANGIEMFRFKTGTPARVDKRSIDFTKMEEQLGDEHVVPFSFSTDPESVQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEGTHDIIRRNLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+PGLEKV I+R  YAIEYD IN  +L PTLE KK
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQYAMYRTVPGLEKVKIVRNAYAIEYDCINSLQLKPTLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N+A K    D +   R+ +YIGV+IDDL +K 
Sbjct: 364 ISGLFAGGQFNGSSGYEEAAVQGFMAGVNAAMKIMGRDQVVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +     + K + + + +   +K
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADIRLRKIGHEIGLVSD---GEYEKLLIKMDEIEHEIK 480

Query: 480 SLVLTSKNLSSTSISF-KQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L  T   ++S +  F ++ G T      T  E +  P+   + L+ +     + S  V 
Sbjct: 481 RLQGTVIGVNSMAQEFLEKYGSTPLKSGVTLAELVKRPELDYEKLWELDERRPELSPEVR 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ IE  Y  Y  RQ  + ++ K  E +L+P+DFDY+ + +L  E  +KL+ ++P  + 
Sbjct: 541 EQVNIEIKYEGYIKRQYQQVEQYKKLEGKLLPEDFDYTQVKSLRREAVQKLNKVQPATIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL++  +
Sbjct: 601 QASRISGVSPADISVLLVHFAR 622


>gi|19747019|ref|NP_608155.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS8232]
 gi|24636866|sp|Q8NZ02|MNMG_STRP8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|19749277|gb|AAL98654.1| glucose inhibited division protein [Streptococcus pyogenes
           MGAS8232]
          Length = 632

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMSKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLNSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              + + N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|257885580|ref|ZP_05665233.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,501]
 gi|257821436|gb|EEV48566.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,501]
          Length = 633

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 382/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGEKTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +  +L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQDFLATINAAPLKDGV--LASDFLRRPEITYADLLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|307711097|ref|ZP_07647519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK321]
 gi|307617059|gb|EFN96237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK321]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 373/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|225858000|ref|YP_002739510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 70585]
 gi|225720746|gb|ACO16600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 70585]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 373/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LKS 480
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF  K  Q  N ++ L  +K 
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLDSIKL 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
             +   N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|183227703|ref|NP_001116698.1| protein MTO1 homolog, mitochondrial isoform c [Homo sapiens]
          Length = 732

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/670 (42%), Positives = 406/670 (60%), Gaps = 65/670 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAA---------------------------------- 380
           LET  +  LF AGQINGTTGYEEAAA                                  
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQLQAILLPQPSLVAGTA 453

Query: 381 ------QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
                 QG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 454 GMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 513

Query: 435 ISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLS 489
           +SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S    K + 
Sbjct: 514 LSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIP 573

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  + +L    P+  +K++    + ERL+IE++Y +  
Sbjct: 574 EASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVL 632

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPA
Sbjct: 633 FHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPA 692

Query: 605 ALNLLLIYIK 614
           A+  LL ++K
Sbjct: 693 AIINLLRFVK 702


>gi|256761832|ref|ZP_05502412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T3]
 gi|256683083|gb|EEU22778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T3]
          Length = 632

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q Q + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTQMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|15900062|ref|NP_344666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae TIGR4]
 gi|111656984|ref|ZP_01407792.1| hypothetical protein SpneT_02001786 [Streptococcus pneumoniae
           TIGR4]
 gi|148983524|ref|ZP_01816843.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP3-BS71]
 gi|148996544|ref|ZP_01824262.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP11-BS70]
 gi|149001778|ref|ZP_01826751.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS69]
 gi|168576443|ref|ZP_02722326.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae MLV-016]
 gi|225855908|ref|YP_002737419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae P1031]
 gi|225860168|ref|YP_002741677.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649788|ref|ZP_04524040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821486|ref|ZP_04597331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229172|ref|ZP_06962853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255777|ref|ZP_06979363.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501930|ref|YP_003723870.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307066806|ref|YP_003875772.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus pneumoniae AP200]
 gi|21263676|sp|Q97T36|MNMG_STRPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14971587|gb|AAK74306.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TIGR4]
 gi|147757119|gb|EDK64158.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP11-BS70]
 gi|147760236|gb|EDK67225.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS69]
 gi|147923671|gb|EDK74783.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP3-BS71]
 gi|183577875|gb|EDT98403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae MLV-016]
 gi|225725047|gb|ACO20899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae P1031]
 gi|225727100|gb|ACO22951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237525|gb|ADI68656.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793413|emb|CBW35780.1| glucose inhibited division protein A [Streptococcus pneumoniae
           INV104]
 gi|301799300|emb|CBW31826.1| glucose inhibited division protein A [Streptococcus pneumoniae
           OXC141]
 gi|306408343|gb|ADM83770.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus pneumoniae AP200]
 gi|327390541|gb|EGE88881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA04375]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|34557213|ref|NP_907028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolinella succinogenes DSM 1740]
 gi|81170590|sp|Q7M9M5|MNMG_WOLSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|34482929|emb|CAE09928.1| GLUCOSE INHIBITED DIVISION PROTEIN A HOMOLOG [Wolinella
           succinogenes]
          Length = 625

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 368/618 (59%), Gaps = 11/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  +A++G  T L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   RDFDVIVVGGGHAGIEAAHASARMGCKTLLLTILVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+V D  G+QFR LN  KGPAVRG R Q D + YR+ M+   L+  NL V Q  
Sbjct: 62  ALGGVMGKVTDLCGLQFRTLNASKGPAVRGTRAQIDMDRYRIMMRNLCLTTPNLTVAQEM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+  +  +  Q     R + V++TTGTFL G++HIG      GR+G+  S  L 
Sbjct: 122 VEELIVEEGAVLGVRTQIGREYRSAKVIMTTGTFLNGLVHIGNRTSSNGRVGEPSSIKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
            S      + GRLKTGT AR+  ++I +   E+   D    PFSF T K      Q+ C 
Sbjct: 182 ESLRSLGLEVGRLKTGTCARIASESIDFSVMEQHPGDLPPPPFSFSTKKEEFAPTQLPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER  HQIF+EP+ L 
Sbjct: 242 VTYTNEKTHEIIRSNFHRAPMFTGQIEGIGPRYCPSIEDKVNRFKERERHQIFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG++T++P ++Q   IR++ GL+   I+R GYAIEYDY+NP EL  TLETKKI 
Sbjct: 302 ATEYYLNGLTTSMPFDVQEAMIRSMAGLQNARIVRYGYAIEYDYVNPVELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+LAGQINGTTGYEEA AQGL AGIN+A      +     R ++Y+GV+IDDL +KG  
Sbjct: 362 NLYLAGQINGTTGYEEAGAQGLAAGINAALSVKGEEPFVLRRDEAYLGVLIDDLVTKGTK 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNA+ RL   G + G + E       K  Q    +   L  L
Sbjct: 422 EPYRMFTSRAEYRLLLREDNAEFRLLRHGARFGLVEEEALLALQKDEQS---IHGGLVHL 478

Query: 482 VLTSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             +S   S  +++F ++ G+ +     T         F    L  I P   + S   + +
Sbjct: 479 RESSATPSKETLAFLEEMGEEKINDKTTWLAIAGRKSFDEAKLRKISPLFEEMSERALGQ 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE+ YA+Y  +Q      ++   K  IP+ F + ++P LS E+ EKL    P  L  A
Sbjct: 539 VLIEAKYASYIQKQQESVGSMQEMLKVKIPEGFIFDTVPGLSLEVIEKLKRFNPPTLFAA 598

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G+TPA+L++L +YI
Sbjct: 599 SEISGITPASLDVLHLYI 616


>gi|306828719|ref|ZP_07461911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis ATCC 6249]
 gi|304428897|gb|EFM31985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis ATCC 6249]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|331267203|ref|YP_004326833.1| glucose-inhibited division protein A [Streptococcus oralis Uo5]
 gi|326683875|emb|CBZ01493.1| glucose-inhibited division protein A [Streptococcus oralis Uo5]
          Length = 637

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N    ++ FK      TA EFL  P+ S Q++ + I P        +IE ++ E
Sbjct: 489 KPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPATEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|291514794|emb|CBK64004.1| glucose-inhibited division protein A [Alistipes shahii WAL 8301]
          Length = 673

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/668 (41%), Positives = 390/668 (58%), Gaps = 65/668 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAGCEAA+ AA+LG+ T L+T   + + +MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDIIVIGGGHAGCEAASAAARLGSRTLLLTMDMAKLAAMSCNPAVGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D   IQFR+LN  KG A+  PR Q D+  +    +R + +  NL + Q    
Sbjct: 65  GGQMGRITDLTTIQFRMLNRSKGAAMWSPRAQCDKTRFSEEWRRTLENTWNLYIWQDAAT 124

Query: 126 ------------------------GFNTEKNIISSIVMQD---NSMIR------------ 146
                                    FN+    ISS    D   +  +R            
Sbjct: 125 ELLFAPAPETNAAPSDNLPDETTTSFNSAPGTISSAAESDADSDPTLRNAPSAAGKLAIR 184

Query: 147 -----------CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR 195
                      C  V+LT+GTFLRGV+H G      GR GD+ S+ +  S     F+TGR
Sbjct: 185 GVRTRMGVEFSCRKVILTSGTFLRGVMHCGASHAEGGRAGDAASHGITESLRAIGFETGR 244

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIM 254
           +KTGTPARLD +TI ++  E Q+ DE    FSF  + K    Q+ C +  T+ E H I+ 
Sbjct: 245 MKTGTPARLDARTIDFEILEPQYGDENPAKFSFSPETKPIKEQLPCFLVYTSKEVHDILR 304

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
                S +++G I   GPRYCPSIEDK+  F +++ HQ+FLEPEG +T+  Y NG S++L
Sbjct: 305 TGFDRSPLFNGTICGIGPRYCPSIEDKLRTFADKDQHQLFLEPEGSSTNEYYLNGFSSSL 364

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + +  I G E ++I RPGYAIEYDY  P +L  +LETK +SGL+ AGQ+NGTTG
Sbjct: 365 PWEVQWKALHKIRGFEDLHIFRPGYAIEYDYFPPTQLHHSLETKLVSGLYFAGQVNGTTG 424

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQGL+AGIN+ R       +   R ++YIGV+IDDL +KGV EPYRMFTSRAEYR
Sbjct: 425 YEEAAAQGLIAGINAHRAMKGESPVVLKRDEAYIGVLIDDLVTKGVDEPYRMFTSRAEYR 484

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-----KSLVLTSKNLS 489
           I LR DNAD RLTP+G K+G I    QK++  + ++   + SL+     +S+     N  
Sbjct: 485 ILLRQDNADIRLTPLGYKIGLIS---QKQYDHFTKKNTLVESLISFAREQSVKAAEINDY 541

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIERLQIESSYA 543
             S+  +   + R  Y+ L   + +  +L +  P  RKF      +   IE  +I+  Y 
Sbjct: 542 LKSVDSEPLSQGRKLYDILMRNNVTFDSLQNALPKLRKFIAANEITPEAIEETEIQIKYK 601

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  R+   A++++  E   IP++FD+ S+ AL+ E ++KLS ++P  + QAS+I G++P
Sbjct: 602 GYIEREKFIAEKLRRLENIRIPENFDFHSMNALTIEARQKLSRIRPETIGQASRIPGVSP 661

Query: 604 AALNLLLI 611
           A +N+LL+
Sbjct: 662 ADVNVLLV 669


>gi|160944276|ref|ZP_02091505.1| hypothetical protein FAEPRAM212_01785 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444458|gb|EDP21462.1| hypothetical protein FAEPRAM212_01785 [Faecalibacterium prausnitzii
           M21/2]
          Length = 624

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/612 (43%), Positives = 371/612 (60%), Gaps = 4/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DAL
Sbjct: 7   YDVIVIGAGHAGIEAAHAAAVLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  +     L + Q EV 
Sbjct: 67  GGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRRRYNEYMKHALEQTPGLAIHQAEVV 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++ Q +       VVL TGT L G I +G     +G  G   +N+L +S
Sbjct: 127 ALEVENGHVKGVITQLHGEYTAKCVVLATGTNLGGKIFVGDAWYASGPDGMHAANALTDS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGIT 243
                    R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I 
Sbjct: 187 LKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPLHNKVECWIA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H +F+EP G NT+
Sbjct: 247 YTNPETHKIILDNIQRSPLYGGIIEGVGPRYCPSIEDKVVRFSGKDRHPLFVEPCGENTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LPE++Q+ F  +I G E + I+RP YAIEYD ++P  L  TLE+K + GL
Sbjct: 307 EMYLQGASSSLPEDVQNAFYHSIKGFEHLEIMRPAYAIEYDCVDPTSLEATLESKVVRGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AG+N+AR +   + +   R  SY+G ++DDL +KGV++P
Sbjct: 367 YGAGQFNGTSGYEEAAAQGLLAGLNAARNALGKEQLVLPRHTSYLGTLVDDLVTKGVMDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++    Q     R  L    L
Sbjct: 427 YRMMTSRSEYRLTLRQDNADQRLTPIGREYGLVQDDRWAKYQHTQQILEAERRRLHEAHL 486

Query: 484 TSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            + +L +   ++      +   A E L  P+ S   +  I     + + ++ ERL+ E  
Sbjct: 487 RTADLRAAMEAVGLAPAAEGGIAEELLRRPEISYPLVAGIIGWGDEITPMLAERLETEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ    +E+   EK LIP+DF+Y++L  L+ E +EKL+ ++P NL QA +I G+
Sbjct: 547 YAGYIARQDRMIREVARHEKTLIPEDFEYAALTGLTLEAREKLARIRPRNLGQAGRIPGV 606

Query: 602 TPAALNLLLIYI 613
           +P+ +  L I +
Sbjct: 607 SPSDVAQLSIAL 618


>gi|251800244|ref|YP_003014975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. JDR-2]
 gi|247547870|gb|ACT04889.1| glucose inhibited division protein A [Paenibacillus sp. JDR-2]
          Length = 629

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/618 (44%), Positives = 384/618 (62%), Gaps = 16/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIVIG GHAG EAA  +A++G  T L+T     +  M CNP+IGG  KGH+VREIDAL
Sbjct: 8   YEVIVIGAGHAGAEAALASARMGCETLLLTINLDMVAFMPCNPSIGGPAKGHVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M++ I   ++L + QG   
Sbjct: 68  GGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKKTIEETDHLTLRQGMAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ IV +  ++ R   VV+TTGT+LRG I +G+L   +G     PS  L  S
Sbjct: 128 DLIVEDGKIAGIVTKTGAIYRAKAVVITTGTYLRGKIIMGELMYESGPNNQQPSVKLSAS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTP R+   TI + KTE Q  D+    FS+ T    N Q+ C +T T
Sbjct: 188 LKELGFKLARFKTGTPPRVHKDTIDFSKTEIQPGDDNPKFFSYETKSSDNEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +  TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T   
Sbjct: 248 SEATHKIINDNLHRAPMFSGAIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKHTSEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST++PE++Q   +R+IPGLEKV ++R GYAIEYD + P +L+P+LETK + GLF 
Sbjct: 308 YVQGLSTSMPEDVQLGILRSIPGLEKVEMMRNGYAIEYDAVVPTQLWPSLETKLVDGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGVMIDDL +KG  +PYR
Sbjct: 368 AGQINGTSGYEEAAGQGIIAGINAARKVQGKEPVVIDRSQGYIGVMIDDLVTKGTSDPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL---- 477
           + TSRAEYR+ LR DNAD RLTP G ++G I E R + F        QE   L ++    
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTPTGYEIGLISEERYQAFLNKKELVAQEIERLGTVKIKP 487

Query: 478 -LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +   VL + N  S  I+F  D     A   L  P+ S   L  + P     +  + E++
Sbjct: 488 EVAQPVLDAAN--SAPIAFTMD-----ALSLLRRPELSYALLEQLSPSELPLTEEMKEQV 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  +Q+ + + +   EK+ IP D  YS +  L++E K+KL+ ++P ++ QAS
Sbjct: 541 EIQIKYAGYIEKQLHQVERLSKMEKKKIPDDIVYSEVHGLASEAKQKLADIRPLSIGQAS 600

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA +++LL+Y++
Sbjct: 601 RIAGVTPADISILLVYLE 618


>gi|323128288|gb|ADX25585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 632

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/618 (43%), Positives = 373/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLDSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N     + FK      TA EF+  P+       S + P A    + +IE L+ 
Sbjct: 488 LKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L++Y++ N
Sbjct: 608 SGVNPADISILMVYLEGN 625


>gi|289422576|ref|ZP_06424419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus anaerobius 653-L]
 gi|289157148|gb|EFD05770.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus anaerobius 653-L]
          Length = 631

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 376/620 (60%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD++V+G GHAGCEAA  +A++G  T +IT    +I ++ CNP+IGG GKG LV+E+DA
Sbjct: 9   NYDIVVVGAGHAGCEAALASARMGMKTLMITMSLDSIAALPCNPSIGGTGKGQLVKELDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R Q D+ LY   M+  I +Q+NLD++  EV
Sbjct: 69  LGGQMGLNIDETYIQSRMLNTAKGPAVHSLRAQTDKNLYHRVMKETIENQDNLDLVMDEV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  +V +  ++ R    +L TG +L+  I +G      G  G + +  L +
Sbjct: 129 EEILHEEKKVLGVVTRLGNIYRSKMTILCTGVYLKSKIFVGHDTFDEGPNGLNYAKKLTD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++   D  R KTGTPAR+   +I +   E Q  DE++ PFSFM + I   QI C +TR
Sbjct: 189 SLVELGLDMRRFKTGTPARVHRDSIDFSVMEPQLGDEKVTPFSFMNEDIEKDQITCYLTR 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I ENI  SA+YSG+I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL+T  
Sbjct: 249 TTPETKQLIQENIHRSAMYSGNIEGTGPRYCPSIEDKIVKFSDKQTHQLFIEPEGLDTKE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+ P EIQ +  RTI GLE   I+RP YAIEYD I+P +L   LE K +  LF
Sbjct: 309 MYIQGVSTSFPMEIQTKMYRTIKGLENARIMRPAYAIEYDCIDPTKLKQNLEIKGVENLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQG++AGIN+  K    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 369 SAGQFNGTSGYEEAAAQGIIAGINAVLKIRGEEPFILDRSEAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKS 480
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R  R+    AK   E + LR    +
Sbjct: 429 RMMTSRAEYRLYLRQDNADARLTQKGYDIGLVTQERYDRYQAKKAKIEAEIDRLRRDRVT 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-----VIER 535
               +  L     +   +G   + YEFL  P+      +S+  D  K S L     V ++
Sbjct: 489 PNEANAYLEERGYALLNNGI--SLYEFLKRPEID----YSVLEDLGKASDLDLSDEVKDQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             I   Y  Y  +QM +  + +  E + + +D +Y  +  L  E ++KL+ +KP ++ QA
Sbjct: 543 AVIVIKYEGYIDKQMKQIDQFRKLENKKLREDMNYDEIEGLRLEARQKLNDIKPSSIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLIY+++
Sbjct: 603 SRISGVSPADISVLLIYLEQ 622


>gi|225010334|ref|ZP_03700806.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-3C]
 gi|225005813|gb|EEG43763.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-3C]
          Length = 622

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/629 (44%), Positives = 394/629 (62%), Gaps = 21/629 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST L+T    +IG MSCNPA+GG+ KG +VR
Sbjct: 1   MFQDKYDVIVVGGGHAGAEAAAAAANMGASTLLVTMNLQSIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D + IQF++LN  KGPA+  PRTQ DR    E +RLA++R      N
Sbjct: 61  EIDALGGYSGIVSDLSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALERTT----N 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D  Q  V+    E N ++ +       I   +VVLT GTFL G+IHIG+ ++  GR G+
Sbjct: 117 VDFYQDMVSSLIIEGNTVTGVKTSLGIPIYGKSVVLTNGTFLNGLIHIGERQLGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             S+ +    +   F++GR+KTGTP R+DG+++ +     Q  D +   FS+   K    
Sbjct: 177 KASSGITEQLVALGFESGRMKTGTPPRVDGRSLDYSVMIPQPGDAQPEKFSYTNTKPLAT 236

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q +C +T T+   H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+E
Sbjct: 237 QRDCHMTHTSSLVHDLLREGFDRSPMFNGSIQSLGPRYCPSIEDKINRFADKDSHQLFVE 296

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T  VY NG ST+LPEE+Q + +R++ G EKV   RPGYAIEYDY  P +L  +LE
Sbjct: 297 PEGWDTVEVYVNGFSTSLPEEVQFKALRSVKGFEKVKFFRPGYAIEYDYFPPTQLTHSLE 356

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK ISGLF AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL 
Sbjct: 357 TKLISGLFFAGQINGTTGYEEAASQGLMAGINAALKVQEKDPFTLQRDEAYIGVLIDDLI 416

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYN--- 472
           +KG  EPYRMFTSRAEYR  LR DNAD RLTP+G  +G   E R K    K     N   
Sbjct: 417 TKGTDEPYRMFTSRAEYRTLLRQDNADFRLTPMGHAIGLASEDRLKAMELKASASENLVS 476

Query: 473 -FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            F  + +K   +  +  S  S    Q GK    ++  S P+ ++ ++ S+          
Sbjct: 477 FFRETSVKPAEINDQLASVGSAPISQSGKL---FKVFSRPNVTMDHMLSVDSVGSFVSEN 533

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            F+  V+E+ +I+  YA Y  ++   A +++  E   IP DFDYS L +LS E +EKL  
Sbjct: 534 NFAREVLEQAEIQIKYAGYIEKEKNNADKLQRLEHVKIPSDFDYSLLKSLSYEAREKLQE 593

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P ++ QAS+I G++P+ +++LL+++ +
Sbjct: 594 IQPVSIAQASRISGVSPSDISVLLVFLGR 622


>gi|257888104|ref|ZP_05667757.1| glucose-inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257824158|gb|EEV51090.1| glucose-inhibited division protein A [Enterococcus faecium
           1,141,733]
          Length = 633

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/621 (43%), Positives = 381/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTQMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGICHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +  +L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQAFLATINAAPLKDGV--LASDFLRRPEITYADLLRFIPENEELTPKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|163754569|ref|ZP_02161691.1| glucose-inhibited division protein A [Kordia algicida OT-1]
 gi|161325510|gb|EDP96837.1| glucose-inhibited division protein A [Kordia algicida OT-1]
          Length = 623

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/634 (44%), Positives = 383/634 (60%), Gaps = 30/634 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA AA +G+ T L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNTEYDVIVVGAGHAGSEAAAAAANMGSKTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V D + IQF++LN  KGPA+  PR Q+DR    E +RL ++R     EN
Sbjct: 61  EIDALGGYSGIVTDNSAIQFKMLNKSKGPAMWSPRAQSDRMRFAEEWRLMLER----TEN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V G   E   I  +       IR  TVVLT GTFL G+IHIG      GR G+
Sbjct: 117 LDFYQEMVRGLIIENEEIKGVKTSLGLEIRSKTVVLTNGTFLNGLIHIGDKNFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITN 235
             +  +    ++  F++GR+KTGTP R+DG+++ + K   Q  DE    FS++   K   
Sbjct: 177 RAATGITEELVELGFESGRMKTGTPPRVDGRSLDYSKMIIQPGDEVPDKFSYLKVTKPLE 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q  C +T T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+
Sbjct: 237 NQRACHMTYTSPEVHNLLREGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQLFV 296

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TL
Sbjct: 297 EPEGWNTVEVYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTL 356

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GLF AGQINGTTGYEEAA+QGL+AGIN+A K  + +     R ++YIGV+IDDL
Sbjct: 357 ETKLVEGLFFAGQINGTTGYEEAASQGLMAGINAALKVQEKEEFILKRNEAYIGVLIDDL 416

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAEYR  LR DNAD RLTP+G KLG   + R +   K     +   
Sbjct: 417 ITKGTEEPYRMFTSRAEYRTLLRQDNADFRLTPVGHKLGLASDERLRSMEKKKTNSDAFI 476

Query: 476 SLLKSL---------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--- 523
              K           VL +KN S      KQ  K    ++  + P+ S++++  +     
Sbjct: 477 QFFKDTSVKPDEINPVLEAKNSSKV----KQQDKM---FKIFARPNISMEDMRKVASVEN 529

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                +    V+E+ +++  YA Y  ++   A ++   E+  IP DF Y  L  LS E +
Sbjct: 530 FIQEHELGKDVLEQTEVQVKYAGYINKEKSNADKLNNLERVKIPADFKYEGLTNLSMEAR 589

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +KL+ ++P NL QAS+I G++P+ ++++L+Y+ +
Sbjct: 590 QKLAKIRPVNLSQASRISGVSPSDISVMLVYLNR 623


>gi|257866267|ref|ZP_05645920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC30]
 gi|257873217|ref|ZP_05652870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC10]
 gi|257800225|gb|EEV29253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC30]
 gi|257807381|gb|EEV36203.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC10]
          Length = 631

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/624 (42%), Positives = 380/624 (60%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L +
Sbjct: 128 EKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T D+  N+  E C +
Sbjct: 188 HLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGL+T
Sbjct: 248 TYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E    ++  Y+ +   + + +K L 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPE---GQYEAYVAKKEAVEAEIKRLS 484

Query: 483 L--------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                        L++   +  +DG    A EFL  P+ +   +              IE
Sbjct: 485 KIRIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIE 542

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + Q
Sbjct: 543 QVEIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++L++YI++  +
Sbjct: 603 ASRISGVNPADISILMVYIEQGKI 626


>gi|300770728|ref|ZP_07080607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763204|gb|EFK60021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 619

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/621 (44%), Positives = 391/621 (62%), Gaps = 16/621 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y+VIV+G GHAGCEAAA AA LG+S  LIT     I  MSCNPAIGG+ KG +VREID
Sbjct: 3   KKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGVIAQMSCNPAIGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G  G +AD + +QFR+LN+ KGPA+  PR+Q DR  +    + ++ +  NLD+ Q  
Sbjct: 63  AMGGYTGIIADKSTLQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRMQLEAIPNLDMWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E +  + ++      I    VVLT GTFL GVIHIG+ K   GR G+  +  L 
Sbjct: 123 VKEVIVEGDKAAGVITSLGIRIEADAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAATGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
              +   F++GR+KTGTP R+DG+++ ++  E+Q+ DE    FS+    I   Q  C IT
Sbjct: 183 EQLVSLGFESGRMKTGTPPRIDGRSLNYELMEEQWGDENKGRFSYTDVPIPTAQRCCWIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN + H ++    + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG NT 
Sbjct: 243 YTNDKVHEMLKTGFERSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGFNTV 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE++Q + ++ IPG E   + RPGYAIEYD+  P +L  TLET +I  L
Sbjct: 303 EIYVNGFSTSLPEDVQQKALQLIPGFENARMYRPGYAIEYDFFPPMQLDLTLETLRIKHL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQG +AGIN+ ++ N L  +   R++SYIGV+IDDL +KG  EP
Sbjct: 363 FFAGQINGTTGYEEAGAQGFIAGINAHQRINDLHELTLKRSESYIGVLIDDLVTKGTEEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP+  KLG +GE R  +  + I+  + +   L+   +
Sbjct: 423 YRMFTSRAEHRLLLRQDNADIRLTPMAYKLGLVGEERLNKVNEKIKNSDAIVEYLRQNSV 482

Query: 484 TS-------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLV 532
           T+       ++L+S+ +S     KTR  +  LS P  +I ++     D      +F    
Sbjct: 483 TADHINPVLEDLNSSPVS----QKTRM-FNILSRPQINIYDIKKADSDFESYLNQFDKET 537

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+ +I+  Y +Y  ++M     +K  E + I  +FDY+SL +LS E ++KL  +KP  L
Sbjct: 538 IEQAEIKVKYDSYFEKEMEIVNRMKKMEDKEINPNFDYNSLTSLSIEARQKLLKVKPRTL 597

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I G++PA +++L++++
Sbjct: 598 GQASRISGVSPADISVLMVHM 618


>gi|255529925|ref|YP_003090297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter heparinus DSM 2366]
 gi|255342909|gb|ACU02235.1| glucose inhibited division protein A [Pedobacter heparinus DSM
           2366]
          Length = 620

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 285/626 (45%), Positives = 387/626 (61%), Gaps = 22/626 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   KEYDVIVVGGGHAGCEAAAAAANLGSSVLLITMNMETIAQMSCNPAMGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDV 119
           A+ G  G ++D   +QFR+LN+ KGPA+  PRTQ DR    E +RLA++R      N+D 
Sbjct: 63  AMGGYSGIISDKTTLQFRMLNLSKGPAMWSPRTQNDRKRFAEEWRLALER----TPNVDF 118

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     + N +  +       I+   VVLT GTFL G+IHIG+ K   GR G+  +
Sbjct: 119 WQDMVGSLLIKDNRVIGVKTAIGVEIKGKAVVLTNGTFLNGLIHIGEKKFGGGRTGEKAA 178

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      F F+ GR+KTGTP R+DG+++ +   E+Q+ DE    FSF   ++   Q  
Sbjct: 179 TGLTEQLTAFGFEAGRMKTGTPPRVDGRSLNYSLMEEQWGDENPGRFSFTNAELPKEQRC 238

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN   H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG
Sbjct: 239 CWITYTNANVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEG 298

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q++ +  IPG E   + RPGYAIEYDY  P +L  TLETK 
Sbjct: 299 WNTCEIYVNGFSTSLPEDVQYRALTQIPGFENAKMFRPGYAIEYDYFPPTQLSLTLETKL 358

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           IS LF AGQINGTTGYEEAA+QG +AGIN+ +K +    +   R++SYIGV+IDDL +KG
Sbjct: 359 ISNLFFAGQINGTTGYEEAASQGFIAGINAHQKVSGQQELIMKRSESYIGVLIDDLVTKG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RL+PI  KLG I + R     + I+  + + +  K
Sbjct: 419 TEEPYRMFTSRAEHRLLLRQDNADIRLSPIAHKLGLISDERLDIVNQKIKNSDTIVAFAK 478

Query: 480 SLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSS 530
              +   N +S      +    Q+ K    +  LS P   + ++  +        ++F  
Sbjct: 479 KQGIEMNNANSMLEELGTTPLNQNVKL---FSLLSRPQVGMNDVRKVSEPLEGLLKQFDK 535

Query: 531 LVIERLQIESSYAAYTGR-QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             IE+ +I+  Y +Y  + Q I  K  K E+K + P +FDYS L +LS E +EKL  +KP
Sbjct: 536 ETIEQAEIKIKYESYFEKEQEIVNKMQKMEDKDINP-NFDYSQLVSLSKEAREKLLKIKP 594

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++P+ +++L+++I K
Sbjct: 595 RTLGQASRISGVSPSDISVLMVHISK 620


>gi|225570319|ref|ZP_03779344.1| hypothetical protein CLOHYLEM_06416 [Clostridium hylemonae DSM
           15053]
 gi|225160851|gb|EEG73470.1| hypothetical protein CLOHYLEM_06416 [Clostridium hylemonae DSM
           15053]
          Length = 633

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/625 (43%), Positives = 380/625 (60%), Gaps = 19/625 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVREI
Sbjct: 12  NDEYDVVVVGAGHAGCEAALAAARLGFCTIVFTVSVDSIALMPCNPNIGGSSKGHLVREI 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+ L++ Q 
Sbjct: 72  DALGGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKLHYSRTMRQVLENQDRLEIKQA 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV    TE N +  +     ++ RC  V+L TGT+L+     G +    G  G   +N L
Sbjct: 132 EVVNILTEDNKVIGVQTYSGAVYRCRAVILCTGTYLKSRCIYGDISQNTGPNGLQAANYL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIEC 240
                +      R KTGTPAR+D  T+ + K E+QF DER++PFSF TD   I   Q+ C
Sbjct: 192 TECLKELGIRMYRFKTGTPARIDKNTVDFSKMEEQFGDERIVPFSFTTDPEDIQIDQVSC 251

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL
Sbjct: 252 WLTYTNKKTHDIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGL 311

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y  G+S++LPE++Q+   RT+PGLE V I+R  YAIEYD I+ ++L P+LE + I
Sbjct: 312 ETNEMYIGGMSSSLPEDVQYAMYRTVPGLENVKIVRNAYAIEYDCIDARQLKPSLEFRNI 371

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF  GQ NG++GYEEAAAQGLVAGIN+AR     + +   R+ +YIGV+IDDL +K  
Sbjct: 372 KGLFSGGQFNGSSGYEEAAAQGLVAGINAARMLQGKEPLVIDRSQAYIGVLIDDLVTKES 431

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLT +G + G I    ++R+  ++ +  ++   ++ 
Sbjct: 432 REPYRMMTSRAEYRLLLRQDNADRRLTKLGYEAGLI---EKERYEHFLMKEKWITEEIER 488

Query: 481 L--VLTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDARK------F 528
           +  V    N     I  + D        T  E +  P+ S + L  I  D ++       
Sbjct: 489 VNHVNVGANEQVQDILREYDSTPLNSGTTLAELIRRPELSYEALRPI--DKKRPVFPEGL 546

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE++ I   Y  Y  RQ  + ++ K  EKR IP++ DY  + +L  E  +KL   +
Sbjct: 547 EEEIIEQVNISIKYDGYIKRQEKQVEQFKKLEKRKIPENIDYDDIKSLRIEAVQKLKEYR 606

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ QAS+I G++PA +++LL+Y+
Sbjct: 607 PVSIGQASRISGVSPADISVLLVYL 631


>gi|229829506|ref|ZP_04455575.1| hypothetical protein GCWU000342_01598 [Shuttleworthia satelles DSM
           14600]
 gi|229791937|gb|EEP28051.1| hypothetical protein GCWU000342_01598 [Shuttleworthia satelles DSM
           14600]
          Length = 645

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/626 (42%), Positives = 374/626 (59%), Gaps = 9/626 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YDVIV+G GHAGCEAA   A+LG  T + T    ++  M CNP IGG  KGHLVRE
Sbjct: 19  VSENYDVIVVGAGHAGCEAALACARLGLETIIFTVSMDSVAMMPCNPHIGGSSKGHLVRE 78

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   +Q ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q
Sbjct: 79  IDALGGQMGINIDKTFLQSKMLNASKGPAVHSLRCQADKYRYSVEMRKTLQATDHLTLRQ 138

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV    TE    +       +  R   V+L TGT+L+     G +    G  G   +N 
Sbjct: 139 AEVTEILTENGRAAGCRTFSGASYRSKAVILATGTYLKARCLYGDVIEYTGPGGLRSANH 198

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L  S  K      R KTGTPAR++  +I + + + Q+ D  + PFSF TD   +   Q+ 
Sbjct: 199 LTASLEKLGIRLRRFKTGTPARIERSSIDFSRMQPQYGDSPVEPFSFTTDPASVQKEQVT 258

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN + HRI+ ENI  S IYSG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEG
Sbjct: 259 CYLTYTNEKGHRILRENIDRSPIYSGLIEGIGPRYCPSIEDKVVKFPDKSRHQLFVEPEG 318

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y +G S+++PE++Q+ F  TIPGLE   I R  YAIEYD I+  +L  +LE K+
Sbjct: 319 LDTSEMYISGASSSMPEDVQYDFYHTIPGLEHAKITRNAYAIEYDCIDANQLDASLECKE 378

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF  GQ NG++GYEEAAAQGL+AGIN+A K    + +   R+ SYIGV+IDDL +K 
Sbjct: 379 VPGLFAGGQFNGSSGYEEAAAQGLIAGINAAMKIQGKEALILDRSSSYIGVLIDDLVTKE 438

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RLTP+G ++G I E R +R        +  R  +K
Sbjct: 439 SFEPYRMMTSRAEYRLLLRQDNADLRLTPLGYQVGLISEDRYQRVRAKKLAIDRERERIK 498

Query: 480 SLVLTSKNL------SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            + L           S  S    +DG   +  E +  P+ S Q L  + PD    +  V 
Sbjct: 499 GIRLGGSRQNNDLLRSWDSSPIPEDGSA-SLEELIRRPELSYQKLADLDPDRPPLAEDVC 557

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++ I   Y  Y  RQ+ + K  K  E++LIP + DY  +  L  E ++KLS ++P N+ 
Sbjct: 558 QQINIGVKYQGYIDRQIKQVKRFKKLEEKLIPGELDYEKVDNLRIEARQKLSRIRPKNIG 617

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G++PA +++L++YIK+   +
Sbjct: 618 QASRISGVSPADISVLMVYIKQGKYR 643


>gi|325846380|ref|ZP_08169349.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481564|gb|EGC84604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 632

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 372/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ SYDV+VIG GHAGCEAA   A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 8   IDESYDVVVIGAGHAGCEAALSIARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + SQENLD+ +
Sbjct: 68  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLESQENLDLFE 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + S+     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 128 QEVDKINVEDGRVKSVETVQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L +S     F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+    D    +Q 
Sbjct: 188 LSDSLEDLGFTLRRFKTGTPARVDRKSLDLTKTEIQKGDENIVAFSFLNEGKDFSDKKQE 247

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN++ S +Y G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 248 ACYLTYTTEKTKEIIMENLERSPMYGGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 307

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 308 SLSTDEMYVQGVSSTLPQEVQKEFYKTIEGLEDCKIIRPAYGIEYDCLDSTNLKRSLESK 367

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGLVAGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 368 EIENLFFAGQINGSSGYEEAAGQGLVAGINAALKLRGDDPLILDRSDAYIGVLIDDLVTK 427

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFLRSL 477
           G  EPYRM TSR EYR+++R DNAD RLT    ++G +  ER QK   K     + +  L
Sbjct: 428 GTNEPYRMMTSRCEYRLTMRQDNADLRLTEKAHEIGLVTDERYQKMIEKRKNIEDEINRL 487

Query: 478 LKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            K +V  S+  N     I         + ++ +  P+ + + L  + PD          +
Sbjct: 488 QKVMVGPSQENNKIMEEIGSSPLKTGYSLFDLIKRPELTYEKLEILDPDRPSLPKFQQIQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DY+ +  L  E  EKL+ +KP ++ QA
Sbjct: 548 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDTDYTKIKGLKKESAEKLNKIKPDSIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 608 SRISGVSPADINVLLIRLK 626


>gi|149010996|ref|ZP_01832301.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764632|gb|EDK71562.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
          Length = 637

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAIDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|168492407|ref|ZP_02716550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573419|gb|EDT93947.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC0288-04]
          Length = 637

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  +++  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMRRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|299143472|ref|ZP_07036552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517957|gb|EFI41696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 631

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/630 (42%), Positives = 387/630 (61%), Gaps = 35/630 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIG GHAGCEAA  AA++G  TAL+     +I +MSCNP +GG GKGHLVREIDAL
Sbjct: 12  FDVVVIGAGHAGCEAALAAARIGQKTALLCINLDSIAAMSCNPNVGGTGKGHLVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D   IQ R+LN  KGPAV   R QAD+  Y  +M+R I +QENL + + E  
Sbjct: 72  GGEMARNIDRTFIQSRMLNTSKGPAVHSLRAQADKRAYHDSMKRVIENQENLYLREAEAT 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   + +++ +  ++    TVV+ TGT+L+G +++G++   +G  G  P+N L +S
Sbjct: 132 EIVIENKSVKAVITKTGAIYNTKTVVIATGTYLKGRVYMGEVNYASGPQGFQPANELSSS 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGIT 243
             K   +  RLKTGTPAR+   +I +   E Q+ DE+++PFSF   DK  N Q E C +T
Sbjct: 192 LEKEGLNLMRLKTGTPARVLRSSIDFSNMEVQYGDEKVVPFSFDNIDKDMNTQQEVCYLT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  E H +I +NI  SA+Y GDI+  GPRYCPSIEDK++RF ++N HQ+F+EPEGL TD
Sbjct: 252 YTTEECHELIKKNINRSALYLGDIEGVGPRYCPSIEDKVMRFSDKNAHQVFIEPEGLTTD 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPEEIQ +    I GLE   I+R  YAIEYD I+   L  +LE  +I G+
Sbjct: 312 EMYVQGVSSSLPEEIQLELYHKIKGLENCRIMRSAYAIEYDAIDATILKRSLEHMEIDGM 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAA QGL+AGIN+A K    + +  +R+++YIGV+IDDL +KG  EP
Sbjct: 372 FFAGQINGSSGYEEAAGQGLIAGINAALKVQGKEPLILNRSEAYIGVLIDDLVTKGTREP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR++LR DNAD RLT  G  +G +   +Q+++ +Y+     +   L+ L  
Sbjct: 432 YRMMTARAEYRLTLRQDNADLRLTQKGYDIGLV---KQEKYDRYVYRKENIEKELERLRE 488

Query: 484 TSKNLSSTSISFKQD------GKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIER 535
              N +  +    ++        T +  E +  P+  + + N+F              ER
Sbjct: 489 IKVNPTEENNRILEELGSVPLKNTVSLAELIRRPELNYKLVNIFD------------KER 536

Query: 536 LQIESS----------YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +QI             Y  Y  +Q I+  + K  E R +  + DYS +  L  E +EKLS
Sbjct: 537 VQIRDDIIEEVEIEIKYEGYIKKQQIQINQFKKLESRKLDINLDYSKIDGLRLEAREKLS 596

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++KP ++ QAS+I G++PA +N+LLIY+++
Sbjct: 597 LVKPESIGQASRITGVSPADINVLLIYLEQ 626


>gi|315221593|ref|ZP_07863513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus anginosus F0211]
 gi|315189427|gb|EFU23122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus anginosus F0211]
          Length = 638

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/616 (42%), Positives = 372/616 (60%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIVVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVQHQENLTLRQTII 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       VV+TTGT LRG I IG LK  +G      + +L +
Sbjct: 128 DEILVENGKVVGVKTATHQEFAAQAVVVTTGTALRGEIIIGDLKYSSGPNHSLAAINLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +     F+ GR KTGTP R+   +I +++T+ Q  DE+   FS+ +  +     QI C +
Sbjct: 188 NLRDLGFEIGRFKTGTPPRVKASSINYEETDIQPGDEKANHFSYTSHDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNGRSHEIIQNNLYRAPMFSGMVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKDLVHSIKGLENAELMRTGYAIEYDMIMPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGINSA K      +   R+D YIGVMIDDL +KG +E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINSALKVQGKPELILKRSDGYIGVMIDDLVTKGTVE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +Y      L ++ 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRRVGLVDDERWLRFEIKKNQYETEMKRLSTIK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
           L      N     + FK      TA EFL  P+ S +++ + I P A      +IE ++ 
Sbjct: 488 LKPIKETNEMVEKLGFKPLTDAVTAKEFLRRPEVSYEDVINFIGPAAEVLDEKIIELIET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QAS+I
Sbjct: 548 EVKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +++L++Y++
Sbjct: 608 SGVNPADISILMVYLE 623


>gi|325286235|ref|YP_004262025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga lytica DSM 7489]
 gi|324321689|gb|ADY29154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga lytica DSM 7489]
          Length = 622

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/630 (43%), Positives = 399/630 (63%), Gaps = 23/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+GGGHAG EAAA AA LG+ T L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKEYDVIVVGGGHAGAEAAAAAANLGSKTLLVTMNLQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G ++D + IQF++LN  KGPA+  PRTQ DR    E +RLA++R      N
Sbjct: 61  EIDALGGYSGIISDKSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALER----TPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
            D  Q  V+G   E + +  +       IR  +VVLT GTFL G+IHIG+ ++  GR G+
Sbjct: 117 CDFYQEMVSGLIIEGDKVCGVTTSLGIEIRSKSVVLTNGTFLNGLIHIGERQLGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP--FSFMTDKIT 234
             +  +    +   F++GR+KTGTP R+DG+++ + K   Q  D  +IP  FS+   K  
Sbjct: 177 KSATGITEQLVDLGFESGRMKTGTPPRVDGRSLDYSKMIVQPGD--VIPEKFSYTDTKSL 234

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q +C +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F
Sbjct: 235 AHQRDCFMTHTSTLVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDKHQLF 294

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +EPEG +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  T
Sbjct: 295 VEPEGWDTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHT 354

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK ++ L+ AGQINGTTGYEEAA+QGL+AGIN+ +K  + + +  +R ++YIGV+IDD
Sbjct: 355 LETKLVNNLYFAGQINGTTGYEEAASQGLMAGINAHQKVKENEPLILNRDEAYIGVLIDD 414

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE---- 470
           L +KG  EPYRMFTSRAEYR  LR DNAD RLTP+G K+G   + R KR  + +Q+    
Sbjct: 415 LITKGTEEPYRMFTSRAEYRTLLRQDNADIRLTPLGHKIGLASDSRLKRMEEKLQKSDAF 474

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-----FSICPDA 525
            NF R    S+V    N    S++     ++   ++  S P+ ++ ++      S   +A
Sbjct: 475 VNFFRE--TSVVPEDINPILESVNSTPVKQSHKMFKSFSRPNVTMDHMRKLKSVSEFIEA 532

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 V+E+ +I+  YA Y  ++   A +++  E   IP+ FDY  L +LS E +EKL 
Sbjct: 533 ENIDREVMEQTEIQVKYAGYIAKEKNNADKLQRLENIKIPEGFDYRQLKSLSYEAREKLE 592

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P  + QAS+I G++P+ +++LL+++ +
Sbjct: 593 AIRPVTISQASRISGVSPSDISVLLVFMGR 622


>gi|257899264|ref|ZP_05678917.1| glucose-inhibited division protein A [Enterococcus faecium Com15]
 gi|293572711|ref|ZP_06683675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E980]
 gi|257837176|gb|EEV62250.1| glucose-inhibited division protein A [Enterococcus faecium Com15]
 gi|291607203|gb|EFF36561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E980]
          Length = 633

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 381/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +  +L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQAFLATINAAPLKDGV--LASDFLRRPEITYADLLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|261206910|ref|ZP_05921599.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium TC 6]
 gi|289567291|ref|ZP_06447670.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium D344SRF]
 gi|293553540|ref|ZP_06674167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1039]
 gi|294616666|ref|ZP_06696437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
 gi|260078538|gb|EEW66240.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium TC 6]
 gi|289160910|gb|EFD08831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium D344SRF]
 gi|291590486|gb|EFF22224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
 gi|291602295|gb|EFF32520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1039]
          Length = 633

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 381/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +  +L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQDFLATINAAPLKDGV--LASDFLRRPEITYADLLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|15902168|ref|NP_357718.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae R6]
 gi|116515312|ref|YP_815647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae D39]
 gi|149005876|ref|ZP_01829605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP18-BS74]
 gi|149017801|ref|ZP_01834260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP23-BS72]
 gi|73621004|sp|Q8DRH8|MNMG_STRR6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122279465|sp|Q04MU9|MNMG_STRP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15457663|gb|AAK98928.1| Glucose inhibited division protein A [Streptococcus pneumoniae R6]
 gi|116075888|gb|ABJ53608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae D39]
 gi|147762232|gb|EDK69193.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP18-BS74]
 gi|147931365|gb|EDK82343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP23-BS72]
          Length = 637

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKAVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A +    +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|194335189|ref|YP_002016983.1| glucose inhibited division protein A [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307666|gb|ACF42366.1| glucose inhibited division protein A [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 621

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/624 (43%), Positives = 370/624 (59%), Gaps = 18/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA++G+S  LI+   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVTGAGHAGCEAALSAARMGSSCLLISSDLTAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KGPA+  PR QADR LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRMLNRSKGPAMHSPRAQADRTLYSLYMRNVIEKEANIDLLQDTVV 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G        S + +    +I   T +L+ GTFL G+IHIG      GR + + P   L  
Sbjct: 122 GIECSGGAFSGVRLMSGRIINGRTAILSCGTFLNGLIHIGMNHYAGGRTIAEPPVYGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
             +K+ F  GRLKTGTPAR+D +++ +D  E+Q  D   I FSF    + NR QI C +T
Sbjct: 182 DLVKYGFAAGRLKTGTPARIDARSVEYDLVEEQSGDPLPISFSFRNTPVINRHQISCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T   TH I+ +    S ++SG ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T+
Sbjct: 242 KTTKATHEILKKGFDRSPLFSGKVQGIGPRYCPSIEDKICRFPDKDSHHIFLEPEGFDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPEEIQ + ++++PGL  V +IRPGYAIEYDY  P ++  +LETK +  L
Sbjct: 302 EMYVNGFSTSLPEEIQLEALQSLPGLRNVKMIRPGYAIEYDYFFPYQINRSLETKLVKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+         +   R+D+YIGV+IDDL +K   EP
Sbjct: 362 FFAGQINGTSGYEEAAAQGLIAGINATLLLRGRAPLHLKRSDAYIGVLIDDLVTKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL       G I       F+    +   + + L  L L
Sbjct: 422 YRMFTSSAEHRLLLRHDNADIRLCHHAKSAGLID---ADTFSDCTNKKRLIDT-LNQLCL 477

Query: 484 TSK------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL------FSICPDARKFSSL 531
            +K      N     +       T++A   L  P      L      F     A     L
Sbjct: 478 DTKIKPDVANTLLAGLGHPPVTTTQSAVNLLKKPGVHFHMLLESALSFKESVYAVTDDPL 537

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+++I+  Y  Y  R ++ A++I   +   IP  F Y  +  LSNE +EKL  L+P  
Sbjct: 538 VFEQVEIDLKYEGYLKRDLLMAEKILRLDLHEIPASFRYDHVTGLSNEGREKLMKLRPET 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +++L+I + +
Sbjct: 598 IGQASRILGVSPSDISVLMIRLGR 621


>gi|257878639|ref|ZP_05658292.1| glucose-inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257881305|ref|ZP_05660958.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|293569166|ref|ZP_06680472.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1071]
 gi|294619738|ref|ZP_06699143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1679]
 gi|294623752|ref|ZP_06702580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium U0317]
 gi|314940138|ref|ZP_07847318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a04]
 gi|314943031|ref|ZP_07849835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133C]
 gi|314953437|ref|ZP_07856355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133A]
 gi|314993824|ref|ZP_07859160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133B]
 gi|314998151|ref|ZP_07863033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a01]
 gi|257812867|gb|EEV41625.1| glucose-inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257816963|gb|EEV44291.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|291588135|gb|EFF19977.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1071]
 gi|291594008|gb|EFF25477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1679]
 gi|291596706|gb|EFF27929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium U0317]
 gi|313587863|gb|EFR66708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a01]
 gi|313591715|gb|EFR70560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133B]
 gi|313594540|gb|EFR73385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133A]
 gi|313598231|gb|EFR77076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133C]
 gi|313640643|gb|EFS05223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a04]
          Length = 633

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 380/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +   L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQDFLATINAAPLKDGV--LASDFLRRPEITYAELLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|156840659|ref|XP_001643709.1| hypothetical protein Kpol_507p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114331|gb|EDO15851.1| hypothetical protein Kpol_507p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 664

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/598 (43%), Positives = 384/598 (64%), Gaps = 14/598 (2%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L+T   + IG+ SCNP++GG+GKG L+RE+DALDG+  R+ D AGIQF++LN  +G A
Sbjct: 63  TTLVTPFLNKIGTCSCNPSMGGVGKGILLREVDALDGVAARITDKAGIQFKMLNRSRGAA 122

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDN 142
           V GPR Q DR LY L MQ+E+ +  NL++ + +V           + +   I  ++++D 
Sbjct: 123 VWGPRAQLDRSLYLLEMQKELFNYPNLNLKEAKVKDIIIDSRQKGDEKYGSIKGLILEDG 182

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           S+++ S VV+TTGTFL G IHIG    PAGR+G+ P+  + ++     F  GRLKTGTPA
Sbjct: 183 SLLKTSKVVITTGTFLGGEIHIGLKSFPAGRIGEEPTFGISSTLNDAGFKLGRLKTGTPA 242

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSA 261
           RL+  +I +   EKQ+ DE   P SFM ++++ + QI C  TRT  E H  I  N+ H A
Sbjct: 243 RLEKSSIDFTNLEKQYGDEVPHPMSFMNNEVSIKDQILCYGTRTTTELHEYIRTNL-HQA 301

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           ++  +    GPRYCPSIE KI+RF ++  H+I+LEPEG+++++VYPNGIS ++PE++Q  
Sbjct: 302 LHIRETVK-GPRYCPSIEAKILRFPDKESHKIWLEPEGIDSNIVYPNGISNSMPEDVQET 360

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            +R +PGLE V I++P Y +EYDY++P++L  +LETK I GLFLAGQINGTTGYEEA AQ
Sbjct: 361 MLRMVPGLENVKILQPAYGVEYDYVDPRQLKSSLETKLIDGLFLAGQINGTTGYEEACAQ 420

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G VAGIN+   S     +   R++SYIGV+IDDL +KG+ EPYRMFTSR+E+RI++R DN
Sbjct: 421 GTVAGINAGLSSLGKPPLKLLRSNSYIGVLIDDLITKGIDEPYRMFTSRSEFRITVRADN 480

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT 501
           AD RLT +G K G I ++R  +F+K    +      LK+   +     S   S      +
Sbjct: 481 ADLRLTELGYKSGVISDKRWSQFSKDRDLFEDTIYKLKNYQRSFTKWRSMDPSLPDTPNS 540

Query: 502 RTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
            + ++ L Y   +I+ L        +     + V+ +++++  Y  Y  +Q    K  + 
Sbjct: 541 ISGWDLLRYQTVTIETLLKNMDAMINMDDIPNHVLLKIEVQGKYEPYMHKQRQYIKAFQA 600

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +E  L+PK+FDYS +P+LS+E K  L++++P  + QA +I+G+T A+L  L   +++N
Sbjct: 601 DEDMLLPKNFDYSLVPSLSSESKALLNLIQPETIGQARRIQGITAASLFELYRLVRRN 658


>gi|270289897|ref|ZP_06196123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici 7_4]
 gi|304385850|ref|ZP_07368194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici DSM 20284]
 gi|270281434|gb|EFA27266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici 7_4]
 gi|304328354|gb|EFL95576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici DSM 20284]
          Length = 635

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/633 (43%), Positives = 379/633 (59%), Gaps = 28/633 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M++ I ++ NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VVLT GT  RG I IG+L+  +G     P+NS  
Sbjct: 130 VDDLIVEDGVCKGVITNTGARYHAKSVVLTLGTAARGKIIIGELQYSSG-----PNNSQA 184

Query: 184 ------NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
                 N   K+ F+  R KTGTP R+DG TI + +TE+Q  DE    FSF T       
Sbjct: 185 ALELTKNLTEKYHFELERFKTGTPPRVDGGTIHYAETEEQPGDEEPNHFSFQTPDSKYLE 244

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN +TH II EN+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+
Sbjct: 245 LKNQLSCWLTYTNEKTHEIIRENLSRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQL 304

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG  TD  Y  G+ST++PEE+Q Q + +I GLE   ++RPGYAIEYD + P +L  
Sbjct: 305 FLEPEGRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKN 364

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I  L+ AGQ NGT+GYEEAA QGL+AGIN+ R++   +     R+D+YIGVMID
Sbjct: 365 TLETKLIKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGQEPFTLKRSDAYIGVMID 424

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G  LG + E   + +A ++Q+   
Sbjct: 425 DLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEMGHDLGLVSE---EEYAAFLQKKAD 481

Query: 474 LRSLLKSLV-------LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
           ++  L  L           + L S      +DG    A EFL  P+ +  +L    P + 
Sbjct: 482 IQDELHRLEQIRIKPGQVKEFLESKGSHGLKDGV--LAAEFLRRPEVTYADLLKFIPASE 539

Query: 527 K-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           K     V+E+++IE  YA Y  +       +K  E ++IP   DY+++  L+ E ++KL 
Sbjct: 540 KQLDRRVVEQVEIEIKYAGYIKKAQERVDRLKKMEAKVIPDRIDYNAISGLATEGRQKLE 599

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            ++P  + QAS+I G+TPA + +L +YI++  +
Sbjct: 600 KIRPTTIAQASRISGVTPADIAILSVYIQQGKI 632


>gi|313893561|ref|ZP_07827131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442004|gb|EFR60426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 623

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 380/617 (61%), Gaps = 10/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  AA++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALAAARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ I + ENL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTIENTENLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         VVL TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVVLCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +  E Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMEVQEGDIHHHSFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIITSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWIEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F            LL++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLVKDDRWDKFTAKKANIEEAMELLRNTPVN 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIERLQI 538
               +   +        RT   AY+ +   + S    +++  DA   ++++  V E + I
Sbjct: 486 PSKETQALLESLGTAPIRTGIHAYDLVKRNELS----YAVVADAFGLKRYTPDVEEAVDI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
             +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I
Sbjct: 542 SITYEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQASRI 601

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA +++LLI +++
Sbjct: 602 SGVSPADVSVLLIQLEQ 618


>gi|332204145|gb|EGJ18210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA47901]
          Length = 637

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADIRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|312952944|ref|ZP_07771800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0102]
 gi|310629085|gb|EFQ12368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0102]
          Length = 632

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/630 (43%), Positives = 386/630 (61%), Gaps = 16/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++YI++  +   E+
Sbjct: 603 QASRISGVNPADISILMVYIEQGKIAKVEV 632


>gi|306821810|ref|ZP_07455405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550177|gb|EFM38173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 626

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 387/620 (62%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCE+A  AA++G +T +IT    ++G + CNP+IGG GKGHLV+EIDA
Sbjct: 7   NYDVIVVGAGHAGCESALAAARMGLNTLIITLSLESVGYLPCNPSIGGTGKGHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN  KGPAV   R Q D++ YR  M++ +  Q+NLD+   EV
Sbjct: 67  LGGQMGISADKTFIQSRMLNTSKGPAVHSLRVQCDKDKYRAYMKKVLEDQKNLDIKMDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  + +  +V +  +      V++ TG +L   ++IG++   +G +G + +  L  
Sbjct: 127 VEILASDDKVDGVVTKLGAKYGAKAVIIATGVYLDSKVYIGEVNFKSGPLGLTGAYELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S  K   +  + KTGTPAR+   +I + K   Q  DE++ PFSF+ +   I   QI+C +
Sbjct: 187 SIEKLGIEMRKFKTGTPARIHQDSIDFTKMTLQEGDEKITPFSFINEGEYIGENQIDCYL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           TRTNL+TH II EN+  S+++ GD+ +  G RYCPSIEDK+ RF +++ HQ F+EPEGL+
Sbjct: 247 TRTNLKTHGIINENLNRSSLFRGDMDAIAGARYCPSIEDKVTRFADKSSHQFFVEPEGLD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G S++L  E+Q +  RT+ GLE   ++RP YAIEYD I+P +L  TLETKKIS
Sbjct: 307 TKEYYIQGFSSSLAYEVQLEMYRTVAGLENCRMMRPAYAIEYDCIDPMQLKMTLETKKIS 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQ+N T+GYEEAAAQG+VAGIN+A K      +  +R +SYIGV+IDDL +KG  
Sbjct: 367 GLYFAGQMNSTSGYEEAAAQGIVAGINAAAKIQGKAEMILTRDNSYIGVLIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  +G + +   +R+ K+I++Y  +   ++ L
Sbjct: 427 EPYRIMTSRAEYRLLLRQDNADERLTQIGRDMGLVDD---ERYDKFIKKYKNIEKEIQRL 483

Query: 482 -------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                  +  ++ L  T IS  +  ++ + YE L  P+ +   L        + S+ +  
Sbjct: 484 KNEKIKPIQINEKL--TEISESELSQSISLYELLKRPNVTYAFLEENGFGNDEISNEIKL 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R +IES Y  Y  +Q ++ +  K  E + +    DY  +  L  E ++KL  +KP N+ Q
Sbjct: 542 RCEIESKYEGYIKKQRLQVENFKNLENKKLSSAIDYEQIKGLRLEARQKLMTIKPENIGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G++P+ +++LL+Y++
Sbjct: 602 ASRISGVSPSDISVLLVYLQ 621


>gi|256963960|ref|ZP_05568131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis HIP11704]
 gi|307273988|ref|ZP_07555198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0855]
 gi|256954456|gb|EEU71088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis HIP11704]
 gi|306509296|gb|EFM78356.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0855]
          Length = 632

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQSKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|260584385|ref|ZP_05852132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulicatella elegans ATCC 700633]
 gi|260157903|gb|EEW92972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulicatella elegans ATCC 700633]
          Length = 632

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/619 (42%), Positives = 372/619 (60%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 9   NYDVIVVGAGHAGSEAALASARMGAKTLLLTMNLEMVAFMPCNPSVGGPAKGVVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY   M++ I  QENLD+ QG  
Sbjct: 69  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHLYAQEMKKTIEQQENLDLKQGIA 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    ++ R   VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 129 ERLIVEDGVCKGVVSHTGAIYRSKAVVLTAGTSSRGQIIIGELKYSSGANNSQPSIKLSE 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           + ++  F+  R KTGTP R+   +I + KTE Q  DE    FSF +     R  QI C +
Sbjct: 189 NLLELGFELARFKTGTPPRVKSSSIDYSKTEIQPGDETPNLFSFTSKDEDYRYDQIPCWL 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEG NT
Sbjct: 249 TYTNEGTHEKIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFLEPEGENT 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q Q I T+ GLEK  ++R GYAIEYD + P +L  T ETK +  
Sbjct: 309 EEVYIQGLSTSLPEDVQIQMIHTVEGLEKAEMMRTGYAIEYDVVIPHQLKNTFETKIVEN 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QGL AGIN+ RK    +     R+D+YIGV++DDL +KG  E
Sbjct: 369 LFTAGQMNGTSGYEEAAGQGLYAGINAVRKIRGEESFILGRSDAYIGVLVDDLVTKGTTE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F +           ++S+ 
Sbjct: 429 PYRLLTSRAEYRLLLRHDNADLRLTEKGRELGLISDERYAAFQEKQAAIQAEIKRIQSIR 488

Query: 483 LTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L       + ++ K+  + +      + L  P+ S  +L     +    S  V E+++I 
Sbjct: 489 LKPTEQLQSFLAEKESAELKDGILLSDLLKRPELSYDDLIGFAEEEVVVSREVKEQVEIS 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP + DY ++  L+ E +++L +++P  + QAS+I 
Sbjct: 549 VKYEGYIAKAIEKVEKLKRMEAKRIPSNIDYDAINGLATEARQRLKLIQPETIAQASRIS 608

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++L++YI++  +
Sbjct: 609 GVNPADVSILMVYIEQGKI 627


>gi|332523577|ref|ZP_08399829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314841|gb|EGJ27826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 633

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 380/622 (61%), Gaps = 14/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+  AA++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLAAARMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ + +QENL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKQTVENQENLTLRQSMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGKVVGVLTATGQKFSARAVVVTTGTALRGEIILGELKYSSGPNNSLASITLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +  K   + GR KTGTP R+   +I + +TE Q  D     FSFM+  +     QI C +
Sbjct: 188 NLKKLGLEIGRFKTGTPPRVKASSIDYSQTEIQPGDHNPNHFSFMSKDEDYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNKNSHDIINKNLYRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKDLLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-------QKRFAKYIQEYNFLR 475
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R       +K+F K ++  + ++
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTELGRQIGLVDDERWSIFETKKKQFEKELRRLSSIK 487

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIE 534
             LK +  T++ +   ++ FK      TA EF+  P+       S    A     + VIE
Sbjct: 488 --LKPIRETNEKVE--ALGFKPLTDAMTAKEFMRRPEIDYATAISFIGSADENLDTKVIE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + Q
Sbjct: 544 LLETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+ PA +++L++YI+ N
Sbjct: 604 ASRISGVNPADISILMVYIEGN 625


>gi|227539255|ref|ZP_03969304.1| glucose-inhibited division protein A [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240937|gb|EEI90952.1| glucose-inhibited division protein A [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 619

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/621 (44%), Positives = 391/621 (62%), Gaps = 16/621 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y+VIV+G GHAGCEAAA AA LG+S  LIT     I  MSCNPAIGG+ KG +VREID
Sbjct: 3   KKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGVIAQMSCNPAIGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G  G +AD + +QFR+LN+ KGPA+  PR+Q DR  +    + ++ +  NLD+ Q  
Sbjct: 63  AMGGYTGIIADKSTLQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRMQLEAIPNLDMWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E +  + ++      I    VVLT GTFL GVIHIG+ K   GR G+  +  L 
Sbjct: 123 VKEVIVEGDKAAGVITSLGIRIEADAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAATGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
              +   F++GR+KTGTP R+DG+++ ++  E+Q+ DE    FS+    I   Q  C IT
Sbjct: 183 EQLVSLGFESGRMKTGTPPRIDGRSLNYELMEEQWGDENKGRFSYTDVPIPTAQRCCWIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN + H ++    + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG NT 
Sbjct: 243 YTNDKVHEMLKTGFERSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGFNTV 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE++Q + ++ IPG E   + RPGYAIEYD+  P +L  TLET ++  L
Sbjct: 303 EIYVNGFSTSLPEDVQQKALQLIPGFENARMYRPGYAIEYDFFPPMQLDLTLETLRVKHL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQG +AGIN+ ++ N L  +   R++SYIGV+IDDL +KG  EP
Sbjct: 363 FFAGQINGTTGYEEAGAQGFIAGINAHQRINDLHELTLKRSESYIGVLIDDLVTKGTEEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP+  KLG +GE R  +  + I+  + +   L+   +
Sbjct: 423 YRMFTSRAEHRLLLRQDNADIRLTPMAYKLGLVGEERLNKVNEKIKNSDAIVEYLRQNSV 482

Query: 484 TS-------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLV 532
           T+       + L+S+ +S     KTR  +  LS P  +I ++     D      +F +  
Sbjct: 483 TADHINPVLEELNSSPVS----QKTRM-FNILSRPQINIYDIKKADSDFESYLNQFDTET 537

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+ +I+  Y +Y  ++M     +K  E + I  +FDY+SL +LS E ++KL  +KP  L
Sbjct: 538 IEQAEIKVKYDSYFEKEMEIVNRMKKMEDKEINPNFDYNSLTSLSIEARQKLLKVKPRTL 597

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I G++PA +++L++++
Sbjct: 598 GQASRISGVSPADISVLMVHM 618


>gi|300861596|ref|ZP_07107680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TUSoD Ef11]
 gi|300849057|gb|EFK76810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TUSoD Ef11]
 gi|315143560|gb|EFT87576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2141]
          Length = 632

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTLDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|312901324|ref|ZP_07760605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0470]
 gi|311291557|gb|EFQ70113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0470]
          Length = 632

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 385/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +  +  VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALNPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|293364411|ref|ZP_06611137.1| glucose-inhibited division protein A [Streptococcus oralis ATCC
           35037]
 gi|307702624|ref|ZP_07639576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus oralis ATCC 35037]
 gi|291317257|gb|EFE57684.1| glucose-inhibited division protein A [Streptococcus oralis ATCC
           35037]
 gi|307623740|gb|EFO02725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus oralis ATCC 35037]
          Length = 637

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|291536995|emb|CBL10107.1| glucose-inhibited division protein A [Roseburia intestinalis M50/1]
          Length = 652

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/642 (41%), Positives = 382/642 (59%), Gaps = 31/642 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMI--------------------RCSTVVLTTGTFLRGV 161
            EVA   T     +++  +D  M+                     C  VVL TGT+LR  
Sbjct: 124 AEVAEIITVPANSAAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAVVLCTGTYLRAR 183

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
              G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++Q  DE
Sbjct: 184 CLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQEQKGDE 243

Query: 222 RLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           R++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRYCPSIE
Sbjct: 244 RVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRYCPSIE 303

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           DK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I+R  Y
Sbjct: 304 DKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKIVRNAY 363

Query: 340 AIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
           AIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A      + +
Sbjct: 364 AIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMGILGKEPL 423

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
              R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + 
Sbjct: 424 VLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIGLISKE 483

Query: 460 RQKRFAK----YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDF 513
           R     K      QE   +  + K  +  +K +     S+         +  E +  P+ 
Sbjct: 484 RYDWVCKKEELIAQE---IERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELIRRPEL 540

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
               L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F+Y  +
Sbjct: 541 DYDKLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENFNYDDV 600

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           P+L  E ++KL    P ++ QAS+I G++PA +++LL+Y+++
Sbjct: 601 PSLRIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQ 642


>gi|168483771|ref|ZP_02708723.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042816|gb|EDT50862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203294|gb|EGJ17361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA47368]
          Length = 637

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 371/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q  + 
Sbjct: 69  GGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 KILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASINLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D TE Q  D     FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDAVPNHFSYTSRDEDYVKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG NT+
Sbjct: 249 YTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTIEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLDSIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N     + FK      TA EFL  P+ S Q++ + I P A +    +IE ++ E
Sbjct: 489 KPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|269798907|ref|YP_003312807.1| glucose inhibited division protein A [Veillonella parvula DSM 2008]
 gi|269095536|gb|ACZ25527.1| glucose inhibited division protein A [Veillonella parvula DSM 2008]
          Length = 623

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 384/620 (61%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  IV +         ++L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDDKVIGIVTELGEFYGAKAIILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWIQGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADLRLTEKGREIGLV---KDDRWAKFTAKKAAIEEAMDMLRNT 482

Query: 485 SKNLS-STSISFKQDGKT--RT---AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  T +  +  G    RT   AY+ +   + S    ++I  DA   ++++  V E 
Sbjct: 483 PVNPSKETQVLLEGLGTAPIRTGIHAYDLVKRNELS----YAIVADAFGLKRYTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 VDISITYEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|69247495|ref|ZP_00604365.1| Glucose-inhibited division protein A subfamily [Enterococcus
           faecium DO]
 gi|257890522|ref|ZP_05670175.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|257893098|ref|ZP_05672751.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|258615277|ref|ZP_05713047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium DO]
 gi|260558220|ref|ZP_05830416.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium C68]
 gi|293563244|ref|ZP_06677696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1162]
 gi|314948149|ref|ZP_07851545.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0082]
 gi|68194820|gb|EAN09295.1| Glucose-inhibited division protein A subfamily [Enterococcus
           faecium DO]
 gi|257826882|gb|EEV53508.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|257829477|gb|EEV56084.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|260075394|gb|EEW63700.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium C68]
 gi|291604783|gb|EFF34265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1162]
 gi|313645403|gb|EFS09983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0082]
          Length = 633

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/621 (42%), Positives = 380/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   AYDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T     +  Q  C +
Sbjct: 188 HLKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK----YIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K      QE   L ++ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +K        L++ + +  +DG    A +FL  P+ +   L    P+  + +   IE+++
Sbjct: 488 IKPTEEVQDFLATINAAPLKDGV--LASDFLRRPEITYAELLRFIPENEELTRKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           ++  Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 VQIKYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L++L++YI++  +
Sbjct: 606 ISGVNPADLSILMVYIEQGKI 626


>gi|317133703|ref|YP_004093017.1| glucose inhibited division protein A [Ethanoligenens harbinense
           YUAN-3]
 gi|315471682|gb|ADU28286.1| glucose inhibited division protein A [Ethanoligenens harbinense
           YUAN-3]
          Length = 630

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/616 (43%), Positives = 364/616 (59%), Gaps = 7/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +Y   VIG GHAG EAA   A+LG  T L T     + +M CNP+IGG  KGHLVREIDA
Sbjct: 7   AYGAAVIGAGHAGIEAALACARLGVPTVLFTLNLDAVANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  + +   LD+ Q EV
Sbjct: 67  LGGEMGRAADATFLQSRMLNRGKGPAVHSLRMQCDRRAYHARMKHVLETTPLLDLKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 K  +S++V +  ++     VV+ TGT+LRG +HIG++   +G  G    + L +
Sbjct: 127 VEIRVRKGAVSAVVTRLGAVFTVRAVVIATGTYLRGRVHIGEVSYESGPDGMFGPSLLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K      R KTGTPAR+   +I +   E Q  D  +IPFSF T+        C I  
Sbjct: 187 NLQKLGLPLLRFKTGTPARVKRASIDFSTLEVQTGDNPVIPFSFETENPGENTAVCHIAY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II EN+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQIF+EP G +T+ 
Sbjct: 247 TNAETHHIIRENLHRSPLYAGRIEGVGPRYCPSIEDKVVRFADKERHQIFIEPLGKDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIS++LPEE+Q QF+RTI G + + ++R  YAIEYD I+P  L P LETK + GL+
Sbjct: 307 LYLGGISSSLPEEVQMQFLRTIKGFDHIRMMRTAYAIEYDCIDPLALTPMLETKAVQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A +      +  SR  +YIG +IDDL +KG  EPY
Sbjct: 367 GAGQFNGTSGYEEAAAQGLMAGINAALQIKGEVPLVLSRAQAYIGTLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLTPIG ++G I + R  RF +  ++    R   + ++L 
Sbjct: 427 RMMTSRAEYRLVLRQDNADMRLTPIGYRIGLISDERFVRFKEKQRQIQTERQRTEKIILP 486

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               +  +   +Q G T         + L  P      L             V E+++I 
Sbjct: 487 PS--AKLNAYLEQVGTTPLTTGAKLADLLRRPQVHYDALAPFDLGRPVLPEAVREQVEIS 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  R+    +++   E+R++P D DY ++  L  E   KL  ++P N+ QAS+I 
Sbjct: 545 VKYEGYIKRENAAIEQMHRLEQRVLPPDIDYRAVSGLRLEAMSKLEAVRPINIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LLIY+++
Sbjct: 605 GVSPADISVLLIYLEQ 620


>gi|255974477|ref|ZP_05425063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T2]
 gi|307284015|ref|ZP_07564185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0860]
 gi|255967349|gb|EET97971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T2]
 gi|306503386|gb|EFM72635.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0860]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|161833655|ref|YP_001597851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri GWSS]
 gi|293977767|ref|YP_003543197.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           DMIN]
 gi|205831574|sp|A8Z5Q4|MNMG_SULMW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152206144|gb|ABS30454.1| glucose inhibited division protein A [Candidatus Sulcia muelleri
           GWSS]
 gi|292667698|gb|ADE35333.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           DMIN]
          Length = 611

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/620 (43%), Positives = 382/620 (61%), Gaps = 15/620 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGH+G EAA  A+ LG++T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVKQYDVIVVGGGHSGSEAALAASNLGSNTLLITTNLYNIGQMSCNPAMGGIAKGQMIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +  ++NL   
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKKKNLSFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +   +  +       I+  +V+LT GTFL G+IHIG  K   GR+ ++   
Sbjct: 121 QSTVVDLIIKNYKVIGVKTILGIYIKSKSVILTNGTFLNGIIHIGDKKNSGGRISENSVK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     K  F +GR+KTGT  RLDG+++ + K  +Q  D  + PFS++++    +Q +C
Sbjct: 181 GLTEKLKKIGFFSGRMKTGTSPRLDGRSLDFSKMIEQLGDFPIEPFSYLSNLNILKQKKC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNLETH ++ +    S I++G IK  GPRYCPSIE+K+ RF  +  HQIF+EPEG+
Sbjct: 241 YITHTNLETHNLLSKEFNRSPIFNGKIKCVGPRYCPSIEEKVYRFSNKENHQIFVEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG ST++PEE+Q++ + TIPG E   ++RPGYAIEYDY  P +L   LETK I
Sbjct: 301 NTIEVYINGFSTSMPEEVQYKALLTIPGFEHAKMVRPGYAIEYDYFPPTQLKNNLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AGIN+  K N+ D     R ++YIGV+IDDL  KG 
Sbjct: 361 ENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKDPFILKRNEAYIGVLIDDLIYKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLT +G+ LG +   R       I++        K 
Sbjct: 421 EEPYRMFTSRAEYRILLRQDNADERLTHMGINLGLVSYDR-------IKKLKNKNKNKKQ 473

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARKFSSL---VIER 535
             L  K   + ++  K++ K     + LS P+ SI ++   S+  +  K +++   ++E+
Sbjct: 474 CFLFFKINKANNLILKENIKI---CDLLSRPEISIYDIIKLSLIKNFIKKNNIDKKILEQ 530

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + +   Y  Y  ++    K++   E   IP DFDY+ + ++S E +EKL   KP ++ +A
Sbjct: 531 ISLYIKYKGYLLKEEENVKKMYRLETIRIPNDFDYNQVKSISIEAREKLLNYKPNSIGEA 590

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ + +L++++ K
Sbjct: 591 SRISGVSPSDIRILILFLIK 610


>gi|256957037|ref|ZP_05561208.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DS5]
 gi|257078714|ref|ZP_05573075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis JH1]
 gi|294781226|ref|ZP_06746573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis PC1.1]
 gi|307268890|ref|ZP_07550255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4248]
 gi|256947533|gb|EEU64165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DS5]
 gi|256986744|gb|EEU74046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis JH1]
 gi|294451689|gb|EFG20144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis PC1.1]
 gi|306514806|gb|EFM83356.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4248]
 gi|315033581|gb|EFT45513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0017]
 gi|315036246|gb|EFT48178.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0027]
 gi|329577013|gb|EGG58488.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1467]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAAIAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|29377752|ref|NP_816906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis V583]
 gi|227518133|ref|ZP_03948182.1| glucose-inhibited division protein A [Enterococcus faecalis TX0104]
 gi|227555661|ref|ZP_03985708.1| glucose-inhibited division protein A [Enterococcus faecalis HH22]
 gi|229547153|ref|ZP_04435878.1| glucose-inhibited division protein A [Enterococcus faecalis TX1322]
 gi|229550723|ref|ZP_04439448.1| glucose-inhibited division protein A [Enterococcus faecalis ATCC
           29200]
 gi|255971527|ref|ZP_05422113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T1]
 gi|256618549|ref|ZP_05475395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ATCC 4200]
 gi|256960900|ref|ZP_05565071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Merz96]
 gi|257081325|ref|ZP_05575686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis E1Sol]
 gi|257083983|ref|ZP_05578344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Fly1]
 gi|257087813|ref|ZP_05582174.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Enterococcus faecalis D6]
 gi|257088458|ref|ZP_05582819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis CH188]
 gi|257417402|ref|ZP_05594396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis AR01/DG]
 gi|257418863|ref|ZP_05595857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Enterococcus faecalis T11]
 gi|257421322|ref|ZP_05598312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|293384793|ref|ZP_06630640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis R712]
 gi|293388149|ref|ZP_06632673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis S613]
 gi|307277335|ref|ZP_07558433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2134]
 gi|307286636|ref|ZP_07566726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0109]
 gi|312902970|ref|ZP_07762159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0635]
 gi|312908838|ref|ZP_07767777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 512]
 gi|312979520|ref|ZP_07791202.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 516]
 gi|81170540|sp|Q82YX0|MNMG_ENTFA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29345220|gb|AAO82976.1| glucose-inhibited division protein A [Enterococcus faecalis V583]
 gi|227074401|gb|EEI12364.1| glucose-inhibited division protein A [Enterococcus faecalis TX0104]
 gi|227175214|gb|EEI56186.1| glucose-inhibited division protein A [Enterococcus faecalis HH22]
 gi|229304156|gb|EEN70152.1| glucose-inhibited division protein A [Enterococcus faecalis ATCC
           29200]
 gi|229307735|gb|EEN73722.1| glucose-inhibited division protein A [Enterococcus faecalis TX1322]
 gi|255962545|gb|EET95021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T1]
 gi|256598076|gb|EEU17252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ATCC 4200]
 gi|256951396|gb|EEU68028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Merz96]
 gi|256989355|gb|EEU76657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis E1Sol]
 gi|256992013|gb|EEU79315.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Fly1]
 gi|256995843|gb|EEU83145.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Enterococcus faecalis D6]
 gi|256997270|gb|EEU83790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis CH188]
 gi|257159230|gb|EEU89190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ARO1/DG]
 gi|257160691|gb|EEU90651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Enterococcus faecalis T11]
 gi|257163146|gb|EEU93106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|291077924|gb|EFE15288.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis R712]
 gi|291082457|gb|EFE19420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis S613]
 gi|295112326|emb|CBL30963.1| glucose-inhibited division protein A [Enterococcus sp. 7L76]
 gi|306502265|gb|EFM71547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0109]
 gi|306505969|gb|EFM75141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2134]
 gi|310625276|gb|EFQ08559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 512]
 gi|310633638|gb|EFQ16921.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0635]
 gi|311287702|gb|EFQ66258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 516]
 gi|315026594|gb|EFT38526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2137]
 gi|315148302|gb|EFT92318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4244]
 gi|315152697|gb|EFT96713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0031]
 gi|315155023|gb|EFT99039.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0043]
 gi|315158702|gb|EFU02719.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0312]
 gi|315165649|gb|EFU09666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1302]
 gi|315174207|gb|EFU18224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1346]
 gi|315576169|gb|EFU88360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0309B]
 gi|315579748|gb|EFU91939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0630]
 gi|315582979|gb|EFU95170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0309A]
 gi|323479217|gb|ADX78656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis 62]
 gi|327536409|gb|AEA95243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis OG1RF]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|315163424|gb|EFU07441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0645]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|229825397|ref|ZP_04451466.1| hypothetical protein GCWU000182_00753 [Abiotrophia defectiva ATCC
           49176]
 gi|229790401|gb|EEP26515.1| hypothetical protein GCWU000182_00753 [Abiotrophia defectiva ATCC
           49176]
          Length = 629

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/622 (43%), Positives = 383/622 (61%), Gaps = 9/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   ++VIV+G GHAGCEAA  AA+LG    + T    +I  M CNP IGG  KGHLV+
Sbjct: 1   MICEDFEVIVVGAGHAGCEAALAAARLGKRVLIFTVSVDSIALMPCNPNIGGTSKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  D   IQ ++LN  KGPAV   R QAD+  Y L M++ + + +NL + 
Sbjct: 61  EIDALGGEMGRNIDKTYIQSKMLNKSKGPAVHSLRAQADKHTYSLEMRKVLENTDNLTIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EVA    E   ++ +     ++     V+L TGT+L+     G +    G  G S S 
Sbjct: 121 QAEVAEILVEGGKVAGVKTYSGAVYTAKAVILCTGTYLKARCIYGDVSEYTGPNGLSASI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S +    D  R KTGTPAR+D +TI + K E Q  DE+++PFSF+ +   I   QI
Sbjct: 181 HLTDSLLNIGIDLRRFKTGTPARVDKRTIDFSKMEVQNGDEKVVPFSFLNEDKDIGREQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN ETHRII ENI  S +Y G I+  GPRYCPSIEDK++RF +++ HQIF+EPE
Sbjct: 241 PCYLTYTNEETHRIIRENIDRSPLYGGIIEGVGPRYCPSIEDKVMRFADKDRHQIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y +G+S+++PE++Q    RTIPGLE V+I+R  YAIEYD I+   L  +LE K
Sbjct: 301 GEYTNEMYVDGMSSSMPEDVQVAMYRTIPGLENVHIVRNAYAIEYDCIDATTLKESLEFK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
             SGLF AGQ NG++GYEEAAAQGL+AGIN+ R  +K + +   R+D+YIGV+IDDL +K
Sbjct: 361 VASGLFAAGQFNGSSGYEEAAAQGLIAGINAVRLIDKKEPLILKRSDAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I + R +   K   +       L
Sbjct: 421 HTKEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEIGLISKERYEALLKKETDIETEIKRL 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           KS  +  K   +  ++  ++G        T  + +  P+ + + L +I  +  K S+ V 
Sbjct: 481 KSKTIGGKKEVNDFLT--ENGSAALLGAVTLADLVKRPELNYELLAAIDNERPKLSTAVG 538

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  R+  + ++ K  E RLIP+  DY  +  +  E ++KLS ++P ++ 
Sbjct: 539 EQVNINIKYEGYIEREYRQVEQFKKMENRLIPEGIDYEKIDNIRKEARQKLSEIQPLSVG 598

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ + +LL+YI++
Sbjct: 599 QASRISGVSPSDIAVLLVYIEQ 620


>gi|325473283|gb|EGC76478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema denticola F0402]
          Length = 628

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/624 (42%), Positives = 382/624 (61%), Gaps = 18/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  +A++G +  LIT    + G +SCNP+IGG+ KG++VREIDAL
Sbjct: 7   YDVIVVGAGHAGIEAALASARMGEAVLLITQTLDSAGRLSCNPSIGGISKGNIVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG++ADA+ IQ+R+LN  +GPAV+ PR QAD+ LY    +  I  ++NL V Q  V 
Sbjct: 67  GGEMGKLADASMIQYRLLNKSRGPAVQAPRVQADKFLYSQLAKHAIELEKNLHVFQDTVI 126

Query: 126 GF---------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                      + EK  +  +  +         VVL TGTF+ G I+IG+ + P GR+G+
Sbjct: 127 DIVSSNTNESGHVEKGSVQYVKTERGREFSAKAVVLATGTFMEGKIYIGEYESPDGRLGE 186

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  L  +  K  F  GRLKTGTP R+  ++     TE+Q ADE + PFSF   +I   
Sbjct: 187 RAAIGLGPALAKKGFTVGRLKTGTPMRILRRSFDSSLTEEQEADEIMRPFSFTNAEIHRP 246

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             +C IT TN ETH II EN+  +A++SG I   G RYCPSIEDKI +F ER+ H +++E
Sbjct: 247 YAKCYITHTNQETHDIIRENLHRAALFSGKITGTGARYCPSIEDKIKKFPERDRHHVYIE 306

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGLNT+ +Y NG+S++LPE++Q + IRTIP  + V I RP YA++Y Y++P +L   L+
Sbjct: 307 PEGLNTEELYINGLSSSLPEDVQDRMIRTIPCFKDVIITRPAYAVDYAYVSPIQLSSDLQ 366

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-------KSNKLDCICFSRTDSYIG 409
           T++I GLFLAGQINGT+GYEEA  QG++AGIN+A        K  K       R ++YIG
Sbjct: 367 TRRIEGLFLAGQINGTSGYEEAGGQGIIAGINAALFSRSLKFKDEKYIPFVLKRDEAYIG 426

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL ++GV EPYRMFT+RAEYR++LR D AD RLT    ++G   +    R  + + 
Sbjct: 427 VMIDDLVTQGVDEPYRMFTARAEYRLNLRHDTADERLTERAYQIGLQTKEASDRLKEKLL 486

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
               + SL K + +T   ++         GK+    + L  P  S++ + SI  +++ +S
Sbjct: 487 TRERIISLWKDIKITRDLIAKNPELKNHIGKSLA--DALHDPQVSLECICSIDENSKDYS 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + ++E  ++E  Y  Y   Q  +  ++K  E   IP DFDY ++  LS E + +L  ++P
Sbjct: 545 AELLESAELEIRYEHYIAVQNRKIAKVKRMENTKIPADFDYDAVSGLSTESRARLKEVRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYI 613
             + QAS+I G+ P+ + LL I +
Sbjct: 605 ETIGQASRIRGIRPSDIMLLSILL 628


>gi|315168441|gb|EFU12458.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1341]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|291539800|emb|CBL12911.1| glucose-inhibited division protein A [Roseburia intestinalis XB6B4]
          Length = 657

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/647 (41%), Positives = 383/647 (59%), Gaps = 36/647 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGF-----NTEKNIISSIVMQDNSMI--------------------RCSTVVLTTGT 156
            EVA       N+     S++  +D  M+                     C  VVL TGT
Sbjct: 124 AEVAEIITVPANSADGETSAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAVVLCTGT 183

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           +LR     G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++
Sbjct: 184 YLRARCLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQE 243

Query: 217 QFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           Q  DER++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRY
Sbjct: 244 QKGDERVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRY 303

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I
Sbjct: 304 CPSIEDKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKI 363

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           +R  YAIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A    
Sbjct: 364 VRNAYAIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMSIL 423

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             + +   R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G
Sbjct: 424 GKEPLVLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIG 483

Query: 455 CIGERRQKRFAK----YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY--EFL 508
            I + R     K      QE   +  + K  +  +K +     S+         +  E +
Sbjct: 484 LISKERYDWVCKKEELIAQE---IERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELI 540

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             P+     L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F
Sbjct: 541 RRPELDYDKLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENF 600

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +Y  +P+L  E ++KL    P ++ QAS+I G++PA +++LL+Y+++
Sbjct: 601 NYDDVPSLRIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQ 647


>gi|104774815|ref|YP_619795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123378327|sp|Q1G7Z5|MNMG_LACDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|103423896|emb|CAI98938.1| GidA (Glucose inhibited division protein A) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 376/622 (60%), Gaps = 13/622 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +   D +T+ Q 
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTD-QT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPE
Sbjct: 244 SCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK
Sbjct: 304 GRKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +K
Sbjct: 364 RIKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I +    R+A+++ +   ++  L
Sbjct: 424 GTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDD---DRYAEFLAKKELIQEDL 480

Query: 479 KSL-VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  +T     + +      G+T       A  FL  P  +++++  +          V
Sbjct: 481 DRLGEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L
Sbjct: 541 KEQVEIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ PA L +L +Y++
Sbjct: 601 AQAERISGVNPADLAILSVYVQ 622


>gi|261368858|ref|ZP_05981741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Subdoligranulum variabile DSM 15176]
 gi|282569044|gb|EFB74579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Subdoligranulum variabile DSM 15176]
          Length = 630

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/624 (42%), Positives = 385/624 (61%), Gaps = 9/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KGHLVRE+DA
Sbjct: 6   NYDVIVVGAGHAGIEAAHAAAVLGAKTAVFTLTLDFIGNMPCNPSIGGTAKGHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG  ADA  +Q R+LN  KGPAV   R Q DR+ Y + M+  +    NLD+ Q E+
Sbjct: 66  LGGLMGIAADATFLQSRMLNRGKGPAVHSLRVQTDRKRYHIWMKHALEKTANLDIHQAEI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G + +   I  +V        C   V+ TGT L G I +G+     G  G   +  L  
Sbjct: 126 VGVDVQDGRIVGVVTALGGYYGCKACVIATGTTLGGRIFVGEAHYDGGPDGTHAATQLTK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGI 242
           S +   F   R KTGTPAR+  ++I + K E Q  D  E L PFSF+T    + ++ C I
Sbjct: 186 SLVSHGFTLRRFKTGTPARVHRRSIDFSKLECQPGDPDELLQPFSFLTRTPMHNKVNCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN +TH++I++N+  S +Y GDI+  GPRYCPSIEDK+VRF ++  H +F+EP G +T
Sbjct: 246 AYTNPQTHQVILDNLDRSPLYGGDIQGVGPRYCPSIEDKVVRFKDKQRHPVFVEPCGEDT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE +Q+   RTI G E + I+RP YAIEYD ++P  L PTLE+K ++G
Sbjct: 306 EEMYLQGLSSSLPEAVQNAMYRTIVGFEHLEIMRPAYAIEYDCVDPTTLKPTLESKVVAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ NGT+GYEEAAAQGL+AG+N+AR +     +  +R  SY+G ++DDL +KGV++
Sbjct: 366 IYGAGQFNGTSGYEEAAAQGLLAGLNAARHALGKSELVLARHTSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+SLR DNAD RLTPIG + G + +   +R+A + ++ +  ++ LK L 
Sbjct: 426 PYRMMTSRSEYRLSLRQDNADERLTPIGREYGLVDD---ERWAVFCRDRDIKQAELKRLE 482

Query: 483 ---LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
              +   +L +      + G++  TA E +  P  + + + ++       +  + +R++ 
Sbjct: 483 NAHIKLADLRAVVPEGTELGESGGTAAELMRRPAVTYERIAAVIGRGEGVTPAMAQRIET 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  R+    ++I+  E+  IP+DFDY+ +  ++ E +EKLS ++P  L QA +I
Sbjct: 543 EIRYAGYIAREERIIRDIQRHEQVAIPEDFDYAPIETMTLEAREKLSKIRPRTLAQAGRI 602

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++P+ L  L I + K   +  E
Sbjct: 603 PGVSPSDLAQLSIALLKTRSQQKE 626


>gi|322412884|gb|EFY03792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 632

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 374/618 (60%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q  +
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQTMI 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++           VV+TTGT LRG I +G+LK  +G      S +L +
Sbjct: 128 DDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVTLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  KF  + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI C +
Sbjct: 188 NLKKFGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNQISHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFSDKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK ISG
Sbjct: 308 EEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKLISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG LE
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSL--LK 479
           PYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F  K  Q  N L+ L  +K
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLDSIK 487

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
              +   N     + FK      TA EF+  P+     + S +   A    + +IE L+ 
Sbjct: 488 LKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATVVSFVGSAAEDLDAKIIELLET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QAS+I
Sbjct: 548 EIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDTIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+ PA +++L+IY++ N
Sbjct: 608 SGVNPADISILMIYLEGN 625


>gi|319946008|ref|ZP_08020257.1| glucose inhibited division protein A [Streptococcus australis ATCC
           700641]
 gi|319747816|gb|EFW00061.1| glucose inhibited division protein A [Streptococcus australis ATCC
           700641]
          Length = 635

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/625 (42%), Positives = 382/625 (61%), Gaps = 26/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  + CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFLPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M+R + +QENL + Q    
Sbjct: 69  GGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRRTVENQENLTLRQ---- 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRMG 175
                  +I  I+++D  +I   T          V++TTGT LRG I IG LK  +G   
Sbjct: 125 ------TMIDEILVEDGKVIGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNH 178

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKI 233
              S +L ++      + GR KTGTP R+   +I +++TE Q  DE    FS+ +  +  
Sbjct: 179 SLASINLADNLKNLGLEIGRFKTGTPPRVKASSINYEETEIQPGDENPNHFSYNSRDEDY 238

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              QI C +T TN ++H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+
Sbjct: 239 LKDQIPCWLTYTNSQSHEIINSNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQL 298

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  
Sbjct: 299 FLEPEGRNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRA 358

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMID
Sbjct: 359 TLETKKISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDGYIGVMID 418

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYN 472
           DL +KG +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF  K  Q  N
Sbjct: 419 DLVTKGTVEPYRLLTSRAEYRLILRHDNADMRLTEIGREVGLVDDERWARFETKKYQFEN 478

Query: 473 FLRSL--LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFS 529
            ++ L  +K   +   N    ++ FK      TA EFL  P+ S Q++ + I P   +  
Sbjct: 479 EMKRLDSIKLKPVKETNEKVAALGFKPLTDAVTAKEFLRRPEVSYQDVVNFIGPATEELD 538

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +IE ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K  ++ P
Sbjct: 539 DKIIELIETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINP 598

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             + QAS+I G+ PA +++L++Y++
Sbjct: 599 ETIGQASRISGVNPADISILMVYLE 623


>gi|312865810|ref|ZP_07726032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus downei F0415]
 gi|311098685|gb|EFQ56907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus downei F0415]
          Length = 632

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/628 (42%), Positives = 385/628 (61%), Gaps = 26/628 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  A+++G  T L T     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NFDVIVVGAGHAGVEAALAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q   
Sbjct: 68  LGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKHTVEKQENLTLRQ--- 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
                  ++I  I+++D  ++   T          VV+TTGT LRG I +G+LK  +G  
Sbjct: 125 -------SLIDDILVEDGHVVGVETATGIKYGAKAVVVTTGTALRGEIILGELKYSSGPN 177

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DK 232
               S +L ++  K   + GR KTGTP R+   +I +++TE Q  D +   FSF++  + 
Sbjct: 178 NSLASITLADNLKKLGLEIGRFKTGTPPRVKASSINYEETEIQPGDGKPNHFSFLSRDED 237

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               QI C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ
Sbjct: 238 YLKDQIPCWLTYTNQSSHDIINKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKDRHQ 297

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +T+ VY  G+ST+LPE++Q   + +I GLE+  ++R GYAIEYD + P +L 
Sbjct: 298 LFLEPEGRDTEEVYIQGLSTSLPEDVQRDLVHSIKGLEQAEMMRTGYAIEYDIVLPHQLR 357

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMI
Sbjct: 358 ATLETKVISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDAYIGVMI 417

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEY 471
           DDL +KG LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + E R   +  K  Q  
Sbjct: 418 DDLVTKGTLEPYRLLTSRAEYRLILRHDNADIRLTPIGRQVGLVDEERWLNYEIKKAQFD 477

Query: 472 NFLRSLLKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKF 528
           N ++ L    +  +K  N    ++ FK      TA EF+  P+ S  ++   I P A   
Sbjct: 478 NEMKRLSTHKLKPTKDTNREVQAMGFKPLTDAVTAKEFMRRPEVSYADIIRFIGPAAENL 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S  +IE L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + 
Sbjct: 538 SPKLIELLETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKN 616
           P  + QAS+I G+ PA +++L++Y++ N
Sbjct: 598 PETIGQASRISGVNPADISILMVYLEGN 625


>gi|158520974|ref|YP_001528844.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfococcus oleovorans Hxd3]
 gi|158509800|gb|ABW66767.1| glucose inhibited division protein A [Desulfococcus oleovorans
           Hxd3]
          Length = 623

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 378/617 (61%), Gaps = 7/617 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            ++YD+IV+G GHAGCEAA  AA++G +  L+      + +M C+P+IGG  KGHLV+EI
Sbjct: 5   EKTYDIIVVGAGHAGCEAALAAARMGCAVLLLAIDLDKVAAMPCSPSIGGTAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M + AD   I  +VLN KKGPA+   RTQ D+  Y  AM++ + +  N+D+   
Sbjct: 65  DALGGEMPKAADKTAIHCKVLNTKKGPAIHSSRTQNDKHRYHTAMKQSVEAHANIDLKAA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  ++ Q     + + V++T GTFL G++HIG     AGR G+  +  L
Sbjct: 125 LVTRIIVEGGSVKGVIDQTGFSWQATCVIITAGTFLGGLVHIGTHSHHAGRAGEFAALEL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIEC 240
            +   +  F TGR+KTGTP RL   +I + K E Q +D    PFS  T   ++  R    
Sbjct: 185 ADCLRELGFATGRMKTGTPPRLSRPSIDFSKFEMQGSDADFRPFSAATRALELPRRPNYL 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G  R N  +  I+  N+ HSA+YSG I     RYCPS EDK+VRF ER  H + LE EGL
Sbjct: 245 GHIREN--SIAIVRNNLAHSALYSGRITGTPARYCPSFEDKVVRFPERTAHHLILEFEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++D +Y +G+  +LP EIQ  F+R++ GLE   I+RP YAIEYDYINP +L PTLETK +
Sbjct: 303 DSDEIYASGLGNSLPMEIQLAFVRSVEGLECAEIMRPAYAIEYDYINPTQLLPTLETKPV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQ+NGT+GYEEAAAQG+ AGIN+A +  K       R+++Y+GVMIDDL ++G 
Sbjct: 363 AGLYLAGQVNGTSGYEEAAAQGMWAGINAACRVQKRPPFVLDRSEAYMGVMIDDLVTRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G++LG + +   +R   Y          +K+
Sbjct: 423 SEPYRMFTSRAEYRLLLREDNADLRLAEKGLELGLVDKETVERIRGYKHRIKAEIQRVKT 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            V+   + ++  ++ +Q     +   A + L   + +  ++ ++ P        V ++++
Sbjct: 483 TVIKPDDKTNALLARRQSPPLTSGSRADQLLKRSEITYADIKTLAPPETPLPERVEQQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y  Y  RQ  E  + K  E   IP+ FDY+++  LSNELK +L+ ++P +L QA++
Sbjct: 543 IEVKYEGYIDRQRREIAKFKDLEMIRIPEGFDYTAVHGLSNELKTRLADMRPLSLGQAAR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           IEG+TPAA+++L+I IK
Sbjct: 603 IEGITPAAISVLMIGIK 619


>gi|41058579|gb|AAR99274.1| glucose-inhibited division protein A [Candidatus Blochmannia
           castaneus]
          Length = 598

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/586 (46%), Positives = 365/586 (62%), Gaps = 15/586 (2%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPA+GG+GKGHLV+EIDA+ G+M   AD AGIQFR+LN  KG AVR  R QAD
Sbjct: 1   TLGQMSCNPAVGGIGKGHLVKEIDAMGGVMAYAADKAGIQFRILNSSKGAAVRATRAQAD 60

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST-VVLTTGTFL 158
           + LYR  ++  +  Q+ L +IQ  V     +KN I  +V+    M   ST VVLTTGTFL
Sbjct: 61  KILYRQVIRSVLEYQKFLSIIQASVEDLIIDKNKIVGVVVPKIGMKFSSTSVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GD  S+SL +  +K       RLKTGT  R+    I +     Q
Sbjct: 121 NGKIHIGMKNFSGGRAGDVESSSLLSERLKGLSLRVNRLKTGTSPRVHANGINFGSLIAQ 180

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D  +  FSFM + +    Q+ C IT TN  TH I+  N+  S +Y+G IK   PRYCP
Sbjct: 181 YSDNPIPVFSFMGSTEQHPAQVPCYITHTNNNTHEIVRSNLYQSPMYAGLIKGRSPRYCP 240

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +R+ HQIFLEPEGL T  +Y NGIST+LP  +Q Q IR+I GLE V+IIR
Sbjct: 241 SIEDKITRFADRDAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIRSIRGLENVHIIR 300

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K +SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 301 PGYAIEYDFFDPRDLKLTLESKFVSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 360

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I
Sbjct: 361 EGWYPRRDQAYLGVLVDDLCTHGAEEPYRMFTSRAEYRLSLREDNADLRLTAIAQQLGLI 420

Query: 457 GERRQKRFAKYIQEYNFLRSLLK--------SLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
           G+ R K F    +     R  L+        S V+   N   T +  + +G+       +
Sbjct: 421 GKTRWKAFCLKRENIEKERQRLRNTYIFPYSSDVVQLNNFLKTPLMREANGEELLRRPEI 480

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            Y   S  + F  C   R+    + E+++I+  Y  Y   Q  E ++  + E  L+P D 
Sbjct: 481 DYAKLSQLSTFGPCILDRQ----IFEQIEIQIKYEGYIRHQQEEIEKYIYNENTLLPTDI 536

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           D+  +  LS E+ +KL+  +P+++ QAS+I G+TPAA++ LL+++K
Sbjct: 537 DFKVVSGLSKEVIDKLNDCRPYSIGQASRISGITPAAISNLLVWLK 582


>gi|313124783|ref|YP_004035042.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312281346|gb|ADQ62065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 631

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 375/622 (60%), Gaps = 13/622 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +   D +T+ Q 
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRINRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTD-QT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPE
Sbjct: 244 SCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT+ +Y    ST++PEE+Q + + T+ GLEK  ++RPGYAIEYD ++P +L  TLETK
Sbjct: 304 GRNTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKAEMMRPGYAIEYDVVDPWQLTHTLETK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +K
Sbjct: 364 RIKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I +    R+A+++ +   ++  L
Sbjct: 424 GTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDD---DRYAEFLAKKELIQEDL 480

Query: 479 KSLV-LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  +T     + +      G+T       A  FL  P  +++++  +          V
Sbjct: 481 DRLAEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPMVTVEDVERLTGQKLAGDRYV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EK + ++P  L
Sbjct: 541 KEQVEIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKFAKIRPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ PA L +L +YI+
Sbjct: 601 AQAERISGVNPADLAILSVYIQ 622


>gi|160893419|ref|ZP_02074204.1| hypothetical protein CLOL250_00968 [Clostridium sp. L2-50]
 gi|156864814|gb|EDO58245.1| hypothetical protein CLOL250_00968 [Clostridium sp. L2-50]
          Length = 632

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/622 (42%), Positives = 379/622 (60%), Gaps = 11/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV+V+G GHAGCEAA  +A+LG  T L T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VVEENYDVVVVGAGHAGCEAALASARLGLETILFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + ++L + 
Sbjct: 63  ELDALGGEMGKNIDKTYIQSKMLNASKGPAVHSLRAQADKSNYSRTMKHTLENTDHLVLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+       ++  +     +      VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSELMVIDGVVKGVKTFSGATYYAKAVVLCTGTYLKARCIYGDVVNHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L +S  +      R KTGTPARLD +TI + + E+Q  DE ++PFSF    + I   Q+
Sbjct: 183 HLSDSMKEAGIGIRRFKTGTPARLDKRTIDFSQMEEQKGDEHIVPFSFTNTEEDIKRDQV 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN ETH II ENI  S ++SG I+  GPRYCPSIEDK+++F ++  HQIF+EPE
Sbjct: 243 SCWLCYTNEETHEIIRENINRSPLFSGVIEGTGPRYCPSIEDKVMKFPDKTRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q++ IR++ GLE V I+R  YAIEYD I+   L  +LE K
Sbjct: 303 GEFTNEMYMGGMSSSLPEDVQYKMIRSMKGLENVRIVRNAYAIEYDCISAINLKHSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQ+NG++GYEEAAAQGL+AGIN+ARK    + +   R+ +YIGV+IDDL +K
Sbjct: 363 DVEGLFGAGQLNGSSGYEEAAAQGLMAGINAARKVLGKEPVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I +   +R+ K+ Q+   +    
Sbjct: 423 ETKEPYRMMTSRAEYRLLLRQDNADLRLTDIGHEIGLIDD---ERYEKFCQKRTMIEEET 479

Query: 479 KSLVLTSKNLSSTSISFKQDGKT---RTAY---EFLSYPDFSIQNLFSICPDARKFSSLV 532
           K L  T    +S    F +  +T   +TA    E    P+ S + +  I P+ +   + V
Sbjct: 480 KRLTETMVGGNSKIQEFLRSMETTELKTAVSLAELTRRPELSYEKIAPIDPERQPLPADV 539

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE++ I   Y  Y  RQ  +  + K  EKR+IP D +Y  +  L  E ++KL  +KP N+
Sbjct: 540 IEQIDISIKYEGYIKRQTEQVHQFKKLEKRMIPADLNYDDVSNLRKEARQKLKDIKPENI 599

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QAS+I G++PA +++LL+Y+K
Sbjct: 600 GQASRISGVSPADISVLLVYLK 621


>gi|309390344|gb|ADO78224.1| glucose inhibited division protein A [Halanaerobium praevalens DSM
           2228]
          Length = 632

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/622 (42%), Positives = 382/622 (61%), Gaps = 16/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEA+   A++G  T  +T     +  M CNP++GG GK H+VREID
Sbjct: 8   KEYDVIVIGSGHAGCEASLAPARMGLKTLTLTVSLDHVAFMPCNPSLGGPGKSHIVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAV G R Q+D++ Y   M+R +  ++NLD+ Q  
Sbjct: 68  ALGGEMAKNMDQTMIQIRMLNTSKGPAVHGLRGQSDKDKYHKRMKRVLEQEDNLDLKQQI 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   +  +V +         V+LTTGTFL+G + IG+ +  AG     P+N L 
Sbjct: 128 AEKIIVEAGEVKGVVTKTGVFFAGKKVILTTGTFLKGRMIIGEAEFNAGPNQQYPANKLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S      +  R KTGTP R+  K++ + K E Q   E  + FS+ ++ +   Q  C +T
Sbjct: 188 GSLKDLGINLRRFKTGTPPRVSKKSMDFSKMEPQ-PGEAGLSFSYESEPLKGEQAMCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+  TH+II +N   + ++SG I   GPRYCPSIEDK+VRF ++  HQ+F+EPEGL+TD
Sbjct: 247 YTSAATHKIINDNKMRTPLFSGVIDGVGPRYCPSIEDKVVRFPDKGRHQLFIEPEGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y +G+ST+LP ++Q +  RTI GLE V I+RPGYAIEYD ++P+EL   LE KK+ GL
Sbjct: 307 EYYVSGLSTSLPYDVQIKMARTIKGLENVEIMRPGYAIEYDCVDPEELKLDLELKKVKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAA QGLVAGIN+A      D +   R+++YIGV+IDDL +KG  EP
Sbjct: 367 YTAGQINGSSGYEEAAGQGLVAGINAALSLQGKDPLILKRSEAYIGVLIDDLVTKGTPEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLR---- 475
           YR+ TSRAEYR+ LR DNAD RLTPIG K+G + E+R K +   +    + +++LR    
Sbjct: 427 YRIMTSRAEYRLLLRQDNADQRLTPIGKKIGLVSEQRYKNYQAKMKAVKKAFSYLRDEQN 486

Query: 476 --SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             +  K +    + L S ++S     K  +  + L  P+ S  +L     +  +    V 
Sbjct: 487 QVNPTKEVRAKLEELGSGNLS-----KPVSLEKLLRRPEISYSDLKYFADNLPEIKKDVQ 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  RQ  + ++ +  E++ IP+  DY+ L  L  E +EKL+ +KP ++ 
Sbjct: 542 EQVEIQVKYKGYMARQEAQVEQFRKMEEKKIPRSLDYNKLENLRLEAREKLAKIKPLSIG 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA ++ L+IY+++
Sbjct: 602 QASRISGVSPADISALMIYLEQ 623


>gi|240145749|ref|ZP_04744350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseburia intestinalis L1-82]
 gi|257202165|gb|EEV00450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseburia intestinalis L1-82]
          Length = 657

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/647 (41%), Positives = 384/647 (59%), Gaps = 36/647 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGF-----NTEKNIISSIVMQDNSMI--------------------RCSTVVLTTGT 156
            EVA       N+     +++  +D  M+                     C  +VL TGT
Sbjct: 124 AEVAEIITVPANSADGETAAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAIVLCTGT 183

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           +LR     G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++
Sbjct: 184 YLRARCLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQE 243

Query: 217 QFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           Q  DER++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRY
Sbjct: 244 QKGDERVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRY 303

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I
Sbjct: 304 CPSIEDKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKI 363

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           +R  YAIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A    
Sbjct: 364 VRNAYAIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMSIL 423

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
           + + +   R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G
Sbjct: 424 EKEPLVLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIG 483

Query: 455 CIGERRQKRFAK----YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY--EFL 508
            I + R     K      QE   +  + K  +  +K +     S+         +  E +
Sbjct: 484 LISKERYDWVCKKEELIAQE---IERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELI 540

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             P+     L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F
Sbjct: 541 RRPELDYDKLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENF 600

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +Y  +P+L  E ++KL    P ++ QAS+I G++PA +++LL+Y+++
Sbjct: 601 NYDDVPSLRIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQ 647


>gi|303230660|ref|ZP_07317410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514715|gb|EFL56707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 623

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/620 (42%), Positives = 381/620 (61%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALACARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M+  + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKHTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNIENMAVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIKSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G +   +  R+ K+  +   +   ++ L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLV---KDDRWDKFTAKKAAIEEGMELLRNT 482

Query: 485 SKNLSSTSISFKQDGKTR------TAYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
           S N S  + +  +   T        AY+ +   + S    ++   DA   ++F+  V E 
Sbjct: 483 SVNPSKETQALLESLGTAPIKTGIHAYDLVKRNELS----YATVADAFGLKRFTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 MDIAITYEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|242823849|ref|XP_002488142.1| mitochondrial translation optimization protein (Mto1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218713063|gb|EED12488.1| mitochondrial translation optimization protein (Mto1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1096

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/614 (42%), Positives = 375/614 (61%), Gaps = 23/614 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T   S IG  SCNP+ GG+GKG ++REIDALDG+ GR+ D AG+ FR+LN  KGPAV 
Sbjct: 66  LVTPSLSNIGVCSCNPSFGGIGKGTMMREIDALDGVAGRIIDKAGVMFRILNRSKGPAVW 125

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF-----NTEKNIISS-----IVMQDN 142
           GPR Q DR+LY+  M+ E++S +NL +I+ +V        + E+N  S+     I +   
Sbjct: 126 GPRAQIDRDLYQRYMREELVSTKNLSIIEAKVEDIVVSRDDNEQNSHSAGRIVGIRLDSG 185

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
            +I  + VV+TTGTFL G IHIG    P+GRMG++ ++ L  S  +  F  GRLKTGTP 
Sbjct: 186 QVIPTNRVVITTGTFLGGEIHIGMEAYPSGRMGEAATHGLSKSLRQAGFQLGRLKTGTPP 245

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKH 259
           RLD K+I +   E Q  D    PFSFM   +      Q+ C +T TN  TH++I +N+  
Sbjct: 246 RLDKKSIDFSSLEVQRGDSPPNPFSFMNKTVQVGDEGQLTCWMTHTNEATHQVIRDNLDK 305

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEI 318
           S      +K  GPRYCPS+E KI+RF  +  HQI+LEPEG    +V+YPNGIS  +P E 
Sbjct: 306 SIHIRETVK--GPRYCPSLEAKIIRFKNKTQHQIWLEPEGFAPNEVIYPNGISMTVPVEA 363

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GL+ V++++P Y +EYDYI+P+ L PTLETK I GL+LAGQINGTTGYEEA
Sbjct: 364 QEAMLRTIRGLKNVHMLQPAYGVEYDYIDPRNLKPTLETKLIGGLYLAGQINGTTGYEEA 423

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG++AG N+   +     +  +R D YIG+M+DDL ++GV EPYRMFTSR+E+RIS R
Sbjct: 424 AGQGILAGTNAGLAAQGKSPMVLTRADGYIGIMVDDLITRGVSEPYRMFTSRSEFRISSR 483

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT +G +   + + R   F     +   L  LL++   TS   S      + D
Sbjct: 484 SDNADLRLTAMGREASVVSDERWNHFNDTKSQIEELSRLLENTRYTSNQWSRMGFQTRVD 543

Query: 499 GKTRTAYEFLSYPDFSIQNLFS--ICPD-----ARKFSSLVIERLQIESSYAAYTGRQMI 551
              R+  + L     +I +L      P      A  F S + +R+ IE+ YA Y  RQ +
Sbjct: 544 TSYRSGLDMLCVEGINIDSLIPHITSPSGTTYTAASFDSEIKKRVTIEAQYAPYVKRQSL 603

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
            A++ + EE+ L+P + DYS++  LS E ++ L  ++P N+    +IEG+TP+    +++
Sbjct: 604 MAEKFRREERMLLPSNMDYSAVHGLSTEERQALERVRPENIGMLRRIEGITPSGAVRIMM 663

Query: 612 YIKKNTVKLNEIVL 625
           Y++K  + + + V+
Sbjct: 664 YLRKGRLVIEDDVV 677


>gi|307153017|ref|YP_003888401.1| glucose inhibited division protein A [Cyanothece sp. PCC 7822]
 gi|306983245|gb|ADN15126.1| glucose inhibited division protein A [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/619 (42%), Positives = 374/619 (60%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+G GH+GCEAA   A+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  SFDVIVVGAGHSGCEAALATARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +   
Sbjct: 72  LGGEIGKMADRTYLQKRILNASRGPAVWALRAQTDKREYAAVMKQIVENQENLFIREAMA 131

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +     +      V+LTTGTFL G I IG   + AGR G+  +  L 
Sbjct: 132 TDLVLGKNDEVIGVQTYFGTCFAAKAVILTTGTFLGGRIWIGGKSMAAGRAGEFAAVGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           ++  +  F+TGRLKTGTPAR+D +++ + K E Q  D+++  FSF       R Q+ C +
Sbjct: 192 DTLNQLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDDKVCWFSFDPQAWVEREQMNCYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG   
Sbjct: 252 TRTTAKTHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEGREI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE IQ   + T+PGLE   ++RP YA+EYDYI   + +PTL TKKI G
Sbjct: 312 PELYIQGFSTGLPENIQLAMLHTLPGLENCVMLRPAYAVEYDYIPATQCYPTLMTKKIEG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+A+    L  + F R +SYIG ++DDL +K + E
Sbjct: 372 LFCAGQINGTTGYEEAAAQGIVAGINAAQLVKGLPFVVFPREESYIGTLVDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLL 478
           PYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR    Q++ A  I E      L 
Sbjct: 432 PYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWDLFQRKQANIIAEKE---RLY 488

Query: 479 KSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +S +  +  L   +I+ K + K +   T  + L  P F   +L +        ++   E 
Sbjct: 489 ESRIKENDELGK-AIAAKTEQKIKGSVTLADLLRRPGFHYADLETYGLGNLDLTTAEKEG 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y+ Y  RQ  + +++     R +P + DY  +  LS E +EKL+ +KP  + QA
Sbjct: 548 AEIDIKYSGYIKRQQNQIEQVSRHSNRSLPAELDYMKIDTLSMEAREKLTKVKPLTIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +N LL+Y++
Sbjct: 608 SRIGGVNPADINALLVYLE 626


>gi|303228569|ref|ZP_07315396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516748|gb|EFL58663.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 623

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 262/620 (42%), Positives = 381/620 (61%), Gaps = 16/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALACARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M+  + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKHTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGTKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEQFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNIENMAVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIKSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G +   +  R+AK+  +   +   +  L  T
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLV---KDDRWAKFTAKKAAIEEGMALLRNT 482

Query: 485 SKNLSSTSISFKQDGKTRT------AYEFLSYPDFSIQNLFSICPDA---RKFSSLVIER 535
             N S  + +  +   T        AY+ +   + S    ++   DA   ++F+  V E 
Sbjct: 483 PVNPSKETQALLESLGTAPIKTGIHAYDLVKRNELS----YATVADAFGLKRFTPDVEEA 538

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I  +Y  Y  +QM + ++++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QA
Sbjct: 539 MDIAITYEGYIKKQMEQVEKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQA 598

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LLI +++
Sbjct: 599 SRISGVSPADVSVLLIQLEQ 618


>gi|260437682|ref|ZP_05791498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio crossotus DSM 2876]
 gi|292809908|gb|EFF69113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio crossotus DSM 2876]
          Length = 627

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/619 (42%), Positives = 373/619 (60%), Gaps = 5/619 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL
Sbjct: 7   YDIAVVGAGHAGCEAALACARLGLETIMFTVSVESIALMPCNPNIGGSSKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ ++LN  KGPAV   R QAD+  Y   M++ + + E+L + Q EVA
Sbjct: 67  GGEMGVNIDKTFIQSKMLNQSKGPAVHSLRAQADKSEYSATMRKTLENTEHLTIRQAEVA 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +I  +     +      VVL TGT+L+     G +    G  G   +N L  S
Sbjct: 127 ELMAENGVIKGVKTFSGAEYYTKAVVLCTGTYLKARCIFGDISYYTGPNGLLAANYLSES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
             K   +  R KTGTPAR+DG+TI +DK E+QF D++++PFSF TD   I   Q  C +T
Sbjct: 187 MKKLGIEIVRFKTGTPARVDGRTIDFDKMEEQFGDKKIVPFSFTTDPESIQKEQRSCWLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +NI  S +YSG I   GPRYCPSIEDK++RF +++ HQ+F+EPEG  T 
Sbjct: 247 YTNEDTHKIIRDNIDRSPLYSGVIHGTGPRYCPSIEDKVMRFKDKDRHQVFIEPEGNYTH 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q+   +T+PGLE   I+R  YAIEYD INP +L  +LE K ISGL
Sbjct: 307 EYYLGGMSSSLPEDVQYAMYKTVPGLEHAKIVRNAYAIEYDCINPNQLKSSLEFKNISGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ+NG++GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +K   EP
Sbjct: 367 FSGGQLNGSSGYEEAAAQGLIAGINAAMKVLNKEPFILDRSEAYIGVLIDDLVTKENKEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY-NFLRSLLKSLV 482
           YRM TSRAEYR+ LR DNAD RL   G ++G + + R  +  + I+   N +  L    V
Sbjct: 427 YRMMTSRAEYRLLLRQDNADIRLYKQGHRIGLLSDERYNKVVEKIKAIDNEIERLKNVSV 486

Query: 483 LTSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             S+ +++  I ++       A   E +  P+ + + L  I  +  +  + VIE++ I  
Sbjct: 487 GGSEKVNNLLIRYESTPLNNGASLAELIRRPELNYEILGEIDENRPQLDADVIEQVNINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  R+  + +  K  E +LIP D D+  +  L  E K+KL    P ++ QAS+I G
Sbjct: 547 KYEGYILREQKQVEHFKKLENKLIPADIDFDDISGLRIEAKQKLKNYSPRSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVK 619
           ++PA + +LL+Y++++  K
Sbjct: 607 VSPADITVLLVYMEQHRRK 625


>gi|332824608|ref|XP_003311451.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 2 [Pan
           troglodytes]
          Length = 732

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/670 (42%), Positives = 406/670 (60%), Gaps = 65/670 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVW 333

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+
Sbjct: 334 LEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPS 393

Query: 355 LETKKISGLFLAGQINGTTGYEEAAA---------------------------------- 380
           LET  +  LF AGQINGTTGYEEAAA                                  
Sbjct: 394 LETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQVQAILLPQPSLVAGTA 453

Query: 381 ------QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
                 QG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 454 GMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 513

Query: 435 ISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLS 489
           +SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S    K + 
Sbjct: 514 LSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIP 573

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  + +L    P+  +K++    + ERL+IE++Y +  
Sbjct: 574 EASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVL 632

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPA
Sbjct: 633 FHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPA 692

Query: 605 ALNLLLIYIK 614
           A+  LL ++K
Sbjct: 693 AIINLLRFVK 702


>gi|256848512|ref|ZP_05553954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714779|gb|EEU29758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 645

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/626 (43%), Positives = 367/626 (58%), Gaps = 9/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 13  NYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 73  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKLTIEKEPNLTLRQGTV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DDLIVEDGVCKGVITNTGARYGAKAVVLTVGTAARGKIIIGELQYESGPNNSKSATKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
              +  FD  R KTGTP R++G TI +D+TE+Q  DE    FSF T        + QI C
Sbjct: 193 CLERLGFDLERFKTGTPPRINGNTIHYDETEEQPGDEEPNHFSFDTPDSQYLALSDQISC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TNL TH +I  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 253 WLTYTNLHTHDLIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L PTLETKKI
Sbjct: 313 DTDEYYVDGLSTSMPEEIQQKMLHSVKGLEDAQLMRPGYAIEYDVVAPYQLHPTLETKKI 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGL+AGIN+ R++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKSPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R  +     Q        L+S
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMEKGHAIGLVSDERLAKMETKKQHVADEIKRLES 492

Query: 481 LVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERL 536
           L +  K  +   I    D   +   TA   L  P  + Q L    P           E++
Sbjct: 493 LRIKPKTAADEFIQANGDNPLKDSLTAAALLRRPYVTYQKLLEFIPSPTTALDRQEAEQV 552

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  ++ ++   +K  E + IP + DY ++  L+ E ++KL  ++P  L QAS
Sbjct: 553 EIQIKYAGYIKKEEVKVNRLKRMEAKKIPANIDYEAIDGLATEGRQKLEKIRPETLAQAS 612

Query: 597 KIEGMTPAALNLLLIYIKKNTV-KLN 621
           +I G+ PA L +L +YI++  + K+N
Sbjct: 613 RISGVNPADLAILSVYIQQGRIAKIN 638


>gi|332705949|ref|ZP_08426022.1| glucose-inhibited division protein A [Lyngbya majuscula 3L]
 gi|332355209|gb|EGJ34676.1| glucose-inhibited division protein A [Lyngbya majuscula 3L]
          Length = 636

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/625 (42%), Positives = 373/625 (59%), Gaps = 5/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAGCEAA  +A+LG  T L+T     I    CNPA+G   K  L  E+DA
Sbjct: 10  AFDVIVVGAGHAGCEAALASARLGCRTILLTLNLDKIAWQPCNPAVGAPAKSQLTHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +  V
Sbjct: 70  LGGEIGKMADRTYLQKRVLNCSRGPAVWALRAQTDKREYAAVMKEIVENQENLTLREAMV 129

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  N  +  +        + S V+LTTGTFL G I +G   + AGR G+  +  L 
Sbjct: 130 TDLVLGANDQVIGVQTYFGVAFQASAVILTTGTFLGGRIWVGNKSMSAGRAGEFAAIGLT 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
            +  +  F+TGRLKTGTPAR+D +++ +   E Q  DE +  FSF  D    R Q+ C +
Sbjct: 190 ETLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDEEVRWFSFDPDVWVEREQMYCYL 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETHR+I +N+  S IY G +++ GPR CPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 250 TRTTSETHRLIRDNLHLSPIYGGWVEAKGPRSCPSIEDKIVRFADKESHQIFIEPEGRDI 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q Q ++T+PGLE   ++RP YA+EYDY+   + +PTL TKKI G
Sbjct: 310 PELYIQGFSTGLPENLQLQLLQTLPGLENCAMLRPAYAVEYDYLPATQCYPTLMTKKIEG 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+ R     + + F R +SYIG +IDDL +K + E
Sbjct: 370 LFCAGQINGTTGYEEAAAQGIVAGINAVRYVGHQEMVVFPREESYIGTLIDDLCTKDLRE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD R+TP+G KLG I +RR + + +        ++ L+S+ 
Sbjct: 430 PYRMLTSRSEYRLLLRSDNADRRMTPLGRKLGLIDDRRWQLYQQKQGNITTEKARLQSVR 489

Query: 483 LTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   +    +I+     K +   T  E L  P F   NL          +    E  +I+
Sbjct: 490 IKEHDPIGIAIASDTQQKIKNSITLAELLRRPGFHYVNLDQYGLGDPNLNQSEREGAEID 549

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++  +  R +P D DY+++  LS E +EKLS +KP  + QAS++ 
Sbjct: 550 LKYDGYLKRQQKQIDQVSRQANRQLPPDLDYAAIETLSKESREKLSQVKPMTIGQASRVG 609

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIV 624
           G+ PA +N LL+Y++    K   +V
Sbjct: 610 GVNPADINALLVYLEVRERKFTAVV 634


>gi|78185898|ref|YP_373941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium luteolum DSM 273]
 gi|78165800|gb|ABB22898.1| Glucose-inhibited division protein A subfamily [Chlorobium luteolum
           DSM 273]
          Length = 627

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/624 (41%), Positives = 382/624 (61%), Gaps = 18/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV G GHAG EAA   ++ G S  L+T   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 8   YDVIVAGAGHAGTEAALAVSRSGLSCLLVTTDLNAVARMSCNPAIGGVAKGQITREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN+ KGPA+  PR QADR  Y   M+R +  + NLD++Q  V 
Sbjct: 68  GGEMAKAIDSTGIQFRMLNLSKGPAMHSPRAQADRVAYTAYMKRALEEEVNLDLLQDTVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G    + I+  + +    ++     +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 128 GIEQREGILRGVRLLSGRLVTGRAAILTCGTFLNGLIHIGMDHYPGGRTIAEPPVTGLTE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           + +   F+ GRLKTGTP R+D +++ + + E+Q  DE   PFSF T  +  R Q+ C +T
Sbjct: 188 NLILAGFEAGRLKTGTPPRIDRRSVDYSRVEEQKGDENPPPFSFSTPTLKGRAQLSCYVT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            ++  TH I+      S +++G ++  GPRYCPSIEDKI RF +R GH IFLEPEG  T+
Sbjct: 248 HSSERTHEILKTGFDRSPLFTGKVQGIGPRYCPSIEDKIFRFPDRPGHHIFLEPEGFETN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R++ GLE+V +IR GYAIEYDY  P ++  TLETK+I  L
Sbjct: 308 EMYVNGFSTSLPEDIQIDGLRSMKGLEEVKLIRAGYAIEYDYFPPYQIHSTLETKRIRNL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+A    K   +   R+D+YIGV++DDL +K + EP
Sbjct: 368 YFAGQINGTSGYEEAAAQGLLAGINAAADILKRPALRLKRSDAYIGVLVDDLVTKEMKEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G + +   +R    ++    +++L +   +
Sbjct: 428 YRMFTSSAEHRLMLRHDNADIRLMHFGHQSGLVSDAAMERCRTKMRAIGEIKALTEKTAI 487

Query: 484 TSKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKFSSLVI----- 533
            ++ L S      + G+   A        +  P  S++ L +  P  R+ + L I     
Sbjct: 488 PAEVLDSL---ISKQGQPHAASGQKISAAIKRPGMSLEILMNSLPPFRE-ALLSISTDKE 543

Query: 534 --ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             ++++I+  Y  Y  R+++ A +I   +   IP +++YS +  LS+E  EKL   +P  
Sbjct: 544 AHQQVEIDLKYEGYLKRELLTADKIARLDALQIPSEYNYSCIKGLSSEGVEKLISHRPET 603

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +++L+++I +
Sbjct: 604 LGQASRISGVSPSDISVLMVHIGR 627


>gi|205375716|sp|Q3B6Y3|MNMG_PELLD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 621

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/624 (41%), Positives = 382/624 (61%), Gaps = 18/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV G GHAG EAA   ++ G S  L+T   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVAGAGHAGTEAALAVSRSGLSCLLVTTDLNAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN+ KGPA+  PR QADR  Y   M+R +  + NLD++Q  V 
Sbjct: 62  GGEMAKAIDSTGIQFRMLNLSKGPAMHSPRAQADRVAYTAYMKRALEEEVNLDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G    + I+  + +    ++     +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GIEQREGILRGVRLLSGRLVTGRAAILTCGTFLNGLIHIGMDHYPGGRTIAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           + +   F+ GRLKTGTP R+D +++ + + E+Q  DE   PFSF T  +  R Q+ C +T
Sbjct: 182 NLILAGFEAGRLKTGTPPRIDRRSVDYSRVEEQKGDENPPPFSFSTPTLKGRAQLSCYVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            ++  TH I+      S +++G ++  GPRYCPSIEDKI RF +R GH IFLEPEG  T+
Sbjct: 242 HSSERTHEILKTGFDRSPLFTGKVQGIGPRYCPSIEDKIFRFPDRPGHHIFLEPEGFETN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R++ GLE+V +IR GYAIEYDY  P ++  TLETK+I  L
Sbjct: 302 EMYVNGFSTSLPEDIQIDGLRSMKGLEEVKLIRAGYAIEYDYFPPYQIHSTLETKRIRNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+A    K   +   R+D+YIGV++DDL +K + EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLLAGINAAADILKRPALRLKRSDAYIGVLVDDLVTKEMKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G + +   +R    ++    +++L +   +
Sbjct: 422 YRMFTSSAEHRLMLRHDNADIRLMHFGHQSGLVSDAAMERCRTKMRAIGEIKALTEKTAI 481

Query: 484 TSKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKFSSLVI----- 533
            ++ L S      + G+   A        +  P  S++ L +  P  R+ + L I     
Sbjct: 482 PAEVLDSL---ISKQGQPHAASGQKISAAIKRPGMSLEILMNSLPPFRE-ALLSISTDKE 537

Query: 534 --ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             ++++I+  Y  Y  R+++ A +I   +   IP +++YS +  LS+E  EKL   +P  
Sbjct: 538 AHQQVEIDLKYEGYLKRELLTADKIARLDALQIPSEYNYSCIKGLSSEGVEKLISHRPET 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +++L+++I +
Sbjct: 598 LGQASRISGVSPSDISVLMVHIGR 621


>gi|220907722|ref|YP_002483033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 7425]
 gi|219864333|gb|ACL44672.1| glucose inhibited division protein A [Cyanothece sp. PCC 7425]
          Length = 647

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/620 (43%), Positives = 376/620 (60%), Gaps = 7/620 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S+DVIV+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  
Sbjct: 20  MMQDSFDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTH 79

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q NL V 
Sbjct: 80  EVDALGGEIGKMADRTYLQKRLLNDSRGPAVWALRAQTDKREYAAVMKALVENQPNLTVR 139

Query: 121 QGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +G V     N+   +I  +         C  V+LTTGTFL G I +GK  + AGR G+ P
Sbjct: 140 EGMVTDLLLNSHAEVIG-VETYFGVTFACQAVILTTGTFLGGRIWVGKKSMAAGRAGEFP 198

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-Q 237
           +  L  +  +  F+TGRLKTGTPAR+D +T+ + K E Q  D  +  FSF  +    R Q
Sbjct: 199 AIGLTETLNRLGFETGRLKTGTPARVDKRTVDYSKMEAQPPDNHIRWFSFDPEVWIEREQ 258

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT   TH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EP
Sbjct: 259 MPCYITRTTALTHQLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEP 318

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG     +Y  G ST LPE IQ + +R++PGLE   ++RP YA+EYDY+   + +PTL T
Sbjct: 319 EGREIPELYIQGFSTGLPENIQLELLRSLPGLEHCAMLRPAYAVEYDYLPATQCYPTLMT 378

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI+GLF AGQINGTTGYEEAAAQGLVAGIN+AR++   + I F R  SYIG +IDDL +
Sbjct: 379 KKIAGLFCAGQINGTTGYEEAAAQGLVAGINAARRAQGQEMIVFPREQSYIGTLIDDLCT 438

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR   F +  +     +  
Sbjct: 439 KDLREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWDLFIQKQENIATEKER 498

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+   L  +     +I+ +     +   T  + L  P F   +L        + +    +
Sbjct: 499 LQLTRLKEQEAIGQAIATETGQVIKGSITLADLLRRPGFHYVDLNRYQLGNPRLTEAEQQ 558

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I+  Y+ Y  RQ  +  +I  +  R +P D +Y+ +  LS E +EKL+ +KP  + Q
Sbjct: 559 GVEIDLKYSGYIQRQQRQIDQIIRQAGRKLPPDLNYAQIGTLSMEAREKLTQVKPLTIGQ 618

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +N LL+Y++
Sbjct: 619 ASRIGGVNPADINALLVYLE 638


>gi|330840115|ref|YP_004414695.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Selenomonas sputigena ATCC 35185]
 gi|329747879|gb|AEC01236.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Selenomonas sputigena ATCC 35185]
          Length = 628

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/617 (44%), Positives = 374/617 (60%), Gaps = 4/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD+IV+G GHAG EAA  AA LG  T L T     I  M CNP+IGG  K HLVRE
Sbjct: 3   IAGEYDIIVLGAGHAGVEAALAAANLGCRTLLATLSLDNIALMPCNPSIGGPAKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M   AD A +Q+R+LN  KGPAV   R Q D++ Y+  M+     QE L+V Q
Sbjct: 63  IDALGGAMAINADEAALQYRLLNTGKGPAVHALRAQEDKKAYQFRMKERCEQQEGLEVRQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E      IV +         V+L TGT+L+G I IG+     G  G   +  
Sbjct: 123 LLAEKILIEDKEARGIVAETGEAYLARAVILATGTYLKGRIVIGEHTTSGGPNGQRAAGE 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +      R KTGTPARLD +++ + K + Q  DE    FSFMT+K T  Q+ C 
Sbjct: 183 LSRSLRENGIKIMRFKTGTPARLDARSLDYRKMQLQPGDEGAQSFSFMTEKRTREQLPCY 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II  NI  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEG +
Sbjct: 243 LTYTNEKTHEIIRANIDRAPMANGIIEGIGPRYCPSIESKILRFPDKDRHQLFLEPEGWH 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LP ++Q  F+ TIPGLEK  I+RPGYAIEYD I+P +L P+L  KKI 
Sbjct: 303 TEEVYVQGMSTSLPVDVQEAFLHTIPGLEKARIMRPGYAIEYDCIDPLQLLPSLMFKKIR 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAAAQGL+AGIN+            SR ++YIGV+IDDL +KG  
Sbjct: 363 GLFSAGQSNGTSGYEEAAAQGLMAGINAVHYIRGKAPFVLSRAEAYIGVLIDDLVTKGTE 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT  G  +G + E R ++F K        R  L++ 
Sbjct: 423 EPYRMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVKEDRWQKFLKKKNGIIEARKTLENT 482

Query: 482 VL--TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VL  + +NL+    +     +T T+  +FL  P+     L S+     + +  V E+L+I
Sbjct: 483 VLHPSVENLARLESAGLAPIRTSTSLADFLRRPEMDYAKLASLF-GLERLAPEVEEQLEI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q  + + ++  E R +P D DY+ +P+L +E +EKL+ ++P ++ QAS+I
Sbjct: 542 AIRYEGYIKKQQEQVERLEHLESRRLPVDLDYALVPSLRDEAREKLAAVRPLSVGQASRI 601

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA +++LLI++++
Sbjct: 602 SGVSPADISVLLIWLEQ 618


>gi|113955354|ref|YP_731984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9311]
 gi|123327530|sp|Q0I6D8|MNMG_SYNS3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113882705|gb|ABI47663.1| glucose-inhibited division protein A [Synechococcus sp. CC9311]
          Length = 649

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/610 (43%), Positives = 371/610 (60%), Gaps = 11/610 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+DAL
Sbjct: 11  FDVIVVGGGHAGCEAAITAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++GR+ADA  IQ RVLN  +GPAV   R Q D+  Y   M + +    NL + +  V 
Sbjct: 71  GGVIGRLADATAIQKRVLNASRGPAVWALRAQTDKRHYSREMLQLLHHTPNLALREAMVT 130

Query: 126 GFNTEKNI-------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           G   + +        I+ +     S+     VVLT GTFL G I +G   + AGR G+  
Sbjct: 131 GLEVDGDPEPAGQARITGVRTYFGSVYGAQAVVLTAGTFLGGRIWVGHQSMSAGRAGEQA 190

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQ 237
           +  L ++  +  F T RLKTGTPAR+D ++I  D+ E Q +D     FSF  T   +  Q
Sbjct: 191 AEGLTDALKQLGFQTDRLKTGTPARVDRRSIALDQLEAQPSDAADRFFSFDPTAWASGEQ 250

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEP
Sbjct: 251 MSCHITRTTAATHQLIKDNLHLTAIYGGIIDSKGPRYCPSIEDKIVRFADKDSHQIFLEP 310

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ + +RT+PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 311 EGRDTPEIYVQGFSTGLPETIQLELLRTLPGLEQCVMLRPAYSVDYDYLPATQLKPSLET 370

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R +SYIG MIDDL S
Sbjct: 371 KRVRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGGQEPVHFPRENSYIGTMIDDLVS 430

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           + + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  
Sbjct: 431 QDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQLFNDKLQAMEEEKQR 490

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+++ L   +  ++++  +     R   T  + L        +L        +    V E
Sbjct: 491 LETVRLKVSDPVASTVEKESGAPIRGSITLADLLRRSGVHSSDLVRHRLADAELPLAVRE 550

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K +  R +P D DY+S+  LS E +EKL+ ++P  L Q
Sbjct: 551 GAEIDIKYSGYLQRQQQQIDQVKRQSLRKLPADLDYASIGTLSREAREKLTAIQPTTLGQ 610

Query: 595 ASKIEGMTPA 604
           A+ I G++ A
Sbjct: 611 ATHIPGVSQA 620


>gi|41058556|gb|AAR99259.1| glucose-inhibited division protein A [Candidatus Blochmannia sayi]
          Length = 592

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/587 (46%), Positives = 369/587 (62%), Gaps = 15/587 (2%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPAIGG+GKGHLV+EIDA+ G+M R  D +GIQFR+LN  KG AVR  R QAD
Sbjct: 1   TLGQMSCNPAIGGIGKGHLVKEIDAMGGMMARAIDKSGIQFRILNSSKGAAVRATRAQAD 60

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFL 158
           + LYR  ++  +  QE+L VIQ  V     E   I+  +V +     R  +VVLTTGTFL
Sbjct: 61  KMLYRQVIRYNLEHQESLLVIQASVEDLIIENTKIVGVVVPKIGIKFRSLSVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GD+ S+SL +  +K      GRLKTGT  R+  K I +D  + Q
Sbjct: 121 NGKIHIGXNNYSGGRAGDTESSSLLSIRLKELSLRVGRLKTGTSPRVHAKGINFDCLQAQ 180

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            +D  +  FSF+ + K   +QI C IT TN +TH I+  N+  S +YSG +K   PRYCP
Sbjct: 181 ISDNPVPVFSFIGSMKEHPKQIPCYITHTNNQTHDIVKSNLHQSPMYSGLMKGIAPRYCP 240

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI+RF +RN HQIFLEPEGL T  +Y NGIST+LP +IQ Q I++I GLE+  I+R
Sbjct: 241 SIEDKIIRFSDRNSHQIFLEPEGLTTPEIYLNGISTSLPFDIQIQMIKSIRGLERAYIVR 300

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K  SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 301 PGYAIEYDFFDPRDLKLTLESKLTSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 360

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  + G I
Sbjct: 361 EGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTSIARRFGLI 420

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSL--------VLTSKNLSSTSISFKQDGKTRTAYEFL 508
            + R + F +   +    R  L++         +    +L  T ++ + +G+       +
Sbjct: 421 DDPRWEFFCRKKGDIEKERQRLRNTYIFPNSTDITQLNDLLKTPLTHEINGEELLKRPEI 480

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +Y   S  ++F +        S V ++++I+  Y  Y  RQ  E     + E  L+P D 
Sbjct: 481 NYEKLSRLSVFGLS----TLDSQVSDQIEIQIKYEGYIRRQQEEINRYVYNENVLLPTDI 536

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D++ +  LS E+ EKL+  KP ++ QAS+I G+TP A+  LLI++KK
Sbjct: 537 DFNIISGLSKEVIEKLNDCKPCSIGQASRISGITPVAIFNLLIWLKK 583


>gi|42526340|ref|NP_971438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema denticola ATCC 35405]
 gi|81170588|sp|Q73PH1|MNMG_TREDE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|41816452|gb|AAS11319.1| glucose inhibited division protein A [Treponema denticola ATCC
           35405]
          Length = 628

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/624 (42%), Positives = 384/624 (61%), Gaps = 18/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  +A++G +  LIT    + G +SCNP+IGG+ KG++VREIDAL
Sbjct: 7   YDVIVVGAGHAGIEAALASARMGEAVLLITQTLDSAGRLSCNPSIGGISKGNIVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG--- 122
            G MG++ADA+ IQ+R+LN  +GPAV+ PR QAD+ LY    +  I  ++NL V Q    
Sbjct: 67  GGEMGKLADASMIQYRLLNKSRGPAVQAPRVQADKFLYSQLAKHAIELEKNLHVFQDTVI 126

Query: 123 EVAGFNT------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++   NT      EK  +  +  +         VVL TGTF+ G I+IG+ + P GR+G+
Sbjct: 127 DIVSSNTNESGYVEKGSVQYVKTERGREFSAKAVVLATGTFMEGKIYIGEYESPDGRLGE 186

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  L  +  K  F  GRLKTGTP R+  ++     TE+Q ADE + PFSF   +I   
Sbjct: 187 RAAIGLGPALAKKGFTVGRLKTGTPMRILRRSFDSSLTEEQEADEIMRPFSFSNAEIHRP 246

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             +C IT TN ETH II EN+  +A++SG I   G RYCPSIEDKI +F ER+ H +++E
Sbjct: 247 YAKCYITHTNQETHDIIRENLHRAALFSGKITGTGARYCPSIEDKIKKFPERDRHHVYIE 306

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGLNT+ +Y NG+S++LPE++Q + IRTIP  + V I RP YA++Y Y++P +L   L+
Sbjct: 307 PEGLNTEELYINGLSSSLPEDVQDRMIRTIPCFKDVIITRPAYAVDYAYVSPIQLSSDLQ 366

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-------KSNKLDCICFSRTDSYIG 409
           T++I GLFLAGQINGT+GYEEA  QG++AGIN+A        K  K       R ++YIG
Sbjct: 367 TRRIEGLFLAGQINGTSGYEEAGGQGIIAGINAALFSRSLKFKDEKYVPFVLKRDEAYIG 426

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL ++GV EPYRMFT+RAEYR++LR D AD RLT    ++G   +    R  + + 
Sbjct: 427 VMIDDLVTQGVDEPYRMFTARAEYRLNLRHDTADERLTERAYQIGLQTKEASNRLKEKLL 486

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
               + SL K + +T   ++         GK+    + L  P  S++ + +I  +++ +S
Sbjct: 487 TREKIISLWKDIKITRDLIAKNPELKNHIGKSLA--DALHDPQVSLECICAIDENSKDYS 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + ++E  ++E  Y  Y   Q  +  ++K  E   IP DFDY ++  LS E + +L  ++P
Sbjct: 545 AELLESAELEIRYEHYIAVQNRKIAKVKRMENTKIPADFDYDAVSGLSTESRTRLKEVRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYI 613
             + QAS+I G+ P+ + LL I +
Sbjct: 605 ETIGQASRIRGIRPSDIMLLSILL 628


>gi|327403528|ref|YP_004344366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fluviicola taffensis DSM 16823]
 gi|327319036|gb|AEA43528.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fluviicola taffensis DSM 16823]
          Length = 623

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/632 (42%), Positives = 388/632 (61%), Gaps = 31/632 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAGCEAA  AAKLG+S  L+T   +TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   KNYDVIVVGGGHAGCEAANAAAKLGSSVLLVTMNMNTIAQMSCNPAMGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDV 119
           AL G  G V+D + IQFR+LN+ KGPA+  PRTQ DR    E +RL +++      N+D 
Sbjct: 63  ALGGGSGIVSDLSAIQFRMLNISKGPAMWSPRTQNDRMKFAEEWRLLLEQ----NPNVDF 118

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q    G   E   +  +       I   +VVLT GTFL G+IH+G+ +   GR+G+  S
Sbjct: 119 WQDMSNGLIVEGGKVVGVRTSMGLSIYGKSVVLTNGTFLNGLIHLGEKQFGGGRIGEKGS 178

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             +    +   F++GR+KTGTP R+DG+++ + K E Q  D+    FS+   +    Q  
Sbjct: 179 TGITEDLIALGFESGRMKTGTPPRIDGRSLDYSKMEIQEGDKNPSKFSYGNTEALKIQRP 238

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T+  TH ++ E    S +++G IKS GPRYCPSIEDKI RF +R+ HQ+F+EPEG
Sbjct: 239 CHITYTSTLTHDLLREGFDRSPMFNGAIKSSGPRYCPSIEDKINRFADRDRHQLFVEPEG 298

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T  +Y NG ST+LPE++Q + + +I G E   + RPGYAIEYDY  P +L  TLETK 
Sbjct: 299 WKTVEIYVNGFSTSLPEDVQLRALHSIEGFENAKMFRPGYAIEYDYFPPTQLKHTLETKL 358

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQINGTTGYEEAA QGL+AGIN+A K  + + +   R+D+YIGV+IDDL +KG
Sbjct: 359 IEGLYFAGQINGTTGYEEAACQGLMAGINAALKVQEREPLILGRSDAYIGVLIDDLITKG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYRI LR DNAD RL P+ ++LG    + Q+   +  ++ N  + L+ 
Sbjct: 419 TQEPYRMFTSRAEYRILLRQDNADIRLVPMAVELGL---QDQEALDRVNRKVNAAKELIG 475

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSICPDARKFSSLVIE 534
           +L     +    +   +  G    + +      ++ P  +++++  +    R  +    E
Sbjct: 476 ALRKEGVSPEIANPILEGVGSAPLSQQIKLSSVITRPHVTMEHVLEMSEHVRGLA----E 531

Query: 535 RLQIESS-----------YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           RL +E +           Y  Y  R+   A ++   E  +IP   DY+S+ +LS E ++K
Sbjct: 532 RLHVEHADAVEQAEILLKYEGYIAREEEVALKLSRMETLVIPASIDYNSMKSLSLEARDK 591

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           L+ +KP  + QAS++ G++P+ +++LLI++ +
Sbjct: 592 LTKIKPATIGQASRVSGVSPSDISVLLIHLGR 623


>gi|189501725|ref|YP_001957442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497166|gb|ACE05713.1| hypothetical protein Aasi_0274 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 621

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 286/624 (45%), Positives = 380/624 (60%), Gaps = 21/624 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAGCEAAA AA++G+   LIT    TI  MSCNPA+GG+ KG ++REIDAL
Sbjct: 5   YDIIVVGAGHAGCEAAAAAARMGSHVLLITMNMGTIAQMSCNPAMGGIAKGQIIREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            GL G + D + IQFR+LN  KGPA+  PR Q+DR    E +RLA+++      NLD  Q
Sbjct: 65  GGLSGIITDKSMIQFRMLNKSKGPAMWSPRAQSDRMRFAEEWRLALEQ----INNLDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +       IR   V+LT GTFL G IHIG+ +   GR G+  +  
Sbjct: 121 DLVKEILIENGRVIGVKTAMGLSIRAKAVILTNGTFLNGAIHIGEKQFKGGRTGEKSATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIEC 240
           L        F++GR+KTGTP R+D +T+ +   E+Q  DE    FSF+   I   +Q  C
Sbjct: 181 LTEQLTNLGFESGRMKTGTPPRVDSRTLDYTCMEEQPGDENPSKFSFLDSTIPLTKQRSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN   H ++ +    S +++  I+  GPRYCPSIEDKI RF ER  HQIF+EPEG 
Sbjct: 241 HVTYTNKRVHELLEKGFDQSPMFNARIQGKGPRYCPSIEDKITRFAERERHQIFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG S++LPE+IQ+  +R IPG E   + RPGYAIEYDY    +L  TLET+ I
Sbjct: 301 NTIEVYVNGFSSSLPEDIQYHALRAIPGFENAKMFRPGYAIEYDYFPATQLNDTLETRLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S L+ AGQINGTTGYEEAA QGLVAGIN+ R  N+L  + FSR+++YIGV+IDDL +K  
Sbjct: 361 SNLYFAGQINGTTGYEEAACQGLVAGINAHRNINELGKVVFSRSEAYIGVLIDDLITKSS 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+RI LR DNAD RLT +G K+G   E+R     K     N L   LK 
Sbjct: 421 DEPYRMFTSRAEFRILLRQDNADLRLTELGYKIGLADEKRMSEVQKKQLHINQLIDTLKE 480

Query: 481 LVLTSKNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNL----FSICPDARKFSSL 531
           L L   N  ST+ SF + G     + +T Y+ L  P+ +I  L     S+      +   
Sbjct: 481 LKL---NPESTNNSFIESGIVPIRERQTIYQLLKRPELTISILKKYHESLSNALENYGIE 537

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           VIE+ +I++ Y  Y  ++    ++ K  E   I   FDY+ + ALS E +EKL   KP  
Sbjct: 538 VIEQAEIQAKYEMYIQKEKELVEKFKRLENCHISPGFDYTQIKALSTEGREKLKKHKPTT 597

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QASKI G++PA + +L++Y+ +
Sbjct: 598 IGQASKISGVSPADIAILMVYMGR 621


>gi|170077730|ref|YP_001734368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7002]
 gi|205831563|sp|B1XJY4|MNMG_SYNP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169885399|gb|ACA99112.1| glucose-inhibited division protein A [Synechococcus sp. PCC 7002]
          Length = 639

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/617 (42%), Positives = 371/617 (60%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GH+GCEAA  +A+LG  T ++T     I    CNPA+GG  K  L  E+DAL
Sbjct: 12  FDVIVIGAGHSGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-- 123
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +G   
Sbjct: 72  GGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKNIVENQDNLVIREGMAT 131

Query: 124 --VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G N E   I  I     +      VVLTTGTFL G I IG   +PAGR G+  +  
Sbjct: 132 DLVLGNNDE---ICGIQTYFGTCFGAKAVVLTTGTFLGGTIWIGNKSMPAGRAGEFAAVG 188

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           +  +  +  F+TGRLKTGTPAR+D +++ + K E Q ADE +  FSF  +    R Q+ C
Sbjct: 189 MTETLNELGFETGRLKTGTPARVDRRSVDYSKMEIQPADEEVRWFSFDPEAWVEREQMPC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF +++ HQIF+EPEG 
Sbjct: 249 YLTRTTPKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFIEPEGR 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               +Y  G ST LPE +Q Q ++++PG+E   ++RP YA+EYDY+   + +PTL TK++
Sbjct: 309 TIPELYIQGFSTGLPESLQLQMLQSLPGMEDCVMLRPAYAVEYDYLPATQCYPTLMTKRV 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQG+VAGIN+A+ +   D + F R  SY+G +IDDL +K +
Sbjct: 369 EGLFSAGQINGTTGYEEAAAQGIVAGINAAKFAQGQDMVVFPREQSYLGTLIDDLCTKDL 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTP+G ++G IG+RR   +    +     +  L +
Sbjct: 429 REPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIGDRRWALYQTKQENIAAEKERLHT 488

Query: 481 LVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +     I+     K +   T  + L  P F   +L S        +       +
Sbjct: 489 ERVKELDPLGQKIAADTGQKIKSSVTLADLLRRPKFHYADLASYGLGNEALTQAEQAGAE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ  +  +I     R +P+  DY ++  LS E +EKL+ ++P  + QA++
Sbjct: 549 IDIKYSGYIKRQQNQIDQISRHANRKLPEGLDYLTVETLSMEAREKLNKVRPLTIGQATR 608

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LL+Y++
Sbjct: 609 IGGVNPADINALLVYLE 625


>gi|212546287|ref|XP_002153297.1| mitochondrial translation optimization protein (Mto1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210064817|gb|EEA18912.1| mitochondrial translation optimization protein (Mto1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 683

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/604 (42%), Positives = 370/604 (61%), Gaps = 23/604 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T     IG  SCNP+ GG+GKG ++REIDALDG+ GRV D AG+ FRVLN  KGPAV 
Sbjct: 65  LVTPSLDNIGVCSCNPSFGGIGKGTMMREIDALDGVAGRVIDKAGVMFRVLNRSKGPAVW 124

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDN 142
           GPR Q DR+LY+  MQ E+++ +NL +++ +V      ++           I  + +   
Sbjct: 125 GPRAQIDRDLYKRYMQEELVATKNLSIVEAKVEDIVVSRDESDQNPHSAGKIVGVRLDSG 184

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
            +I  S VV+TTGTFL G IHIG    P+GRMG++ +++L  S  +  F  GRLKTGTP 
Sbjct: 185 QVIPTSRVVITTGTFLGGEIHIGLEAYPSGRMGEAATHALSKSLRQAGFQLGRLKTGTPP 244

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNR-QIECGITRTNLETHRIIMENIKH 259
           RLD K+I +   E Q  D    PFSFM  T ++++  Q+ C +T TN  TH II  N+ +
Sbjct: 245 RLDKKSIDFSSLEVQRGDSPPNPFSFMNKTTQVSDEGQLTCWMTHTNEATHDIIRANLDN 304

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEI 318
           S      ++  GPRYCPS+E KI+RF  +  HQI+LEPEG    +V+YPNGIS  +P E 
Sbjct: 305 SIHIRETVR--GPRYCPSLEAKILRFKHKKEHQIWLEPEGFAPNEVIYPNGISMTVPVEA 362

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE V +++P Y +EYDYI+P+ L PTLETK I GL+LAGQINGTTGYEEA
Sbjct: 363 QEAMLRTIRGLENVRMLQPAYGVEYDYIDPRNLKPTLETKLIGGLYLAGQINGTTGYEEA 422

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG++AG+N+   +     +  +R D YIG+M+DDL ++GV EPYRMFTSR+E+RIS R
Sbjct: 423 AGQGILAGMNAGLAAQGKAPMVLTRADGYIGIMVDDLITRGVSEPYRMFTSRSEFRISSR 482

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT +G +   + + R   F++   + + L  LL +   TS   S      + D
Sbjct: 483 SDNADLRLTAMGREASVVSDERWAHFSETKAQIDELSQLLANTRYTSNQWSRLGFQTRVD 542

Query: 499 GKTRTAYEFLSYPDFSIQNLF-------SICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
              R+  + L      I +L         I   +  F   + +R+ IE+ YA Y  RQ +
Sbjct: 543 TSYRSGLDMLCVDGIDIDSLIPHITSPSGIAYTSASFDPEIKKRVTIEAQYAPYVKRQSL 602

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
            A++ + EE+ L+P + DYS++  LS E ++ L  ++P N+    +IEG+TP+    +++
Sbjct: 603 MAEKFRREERMLLPSNMDYSAVHGLSTEERQALERVRPENIGMLRRIEGITPSGAVRIMM 662

Query: 612 YIKK 615
           +++K
Sbjct: 663 HLRK 666


>gi|195952805|ref|YP_002121095.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932417|gb|ACG57117.1| glucose inhibited division protein A [Hydrogenobaculum sp. Y04AAS1]
          Length = 610

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/615 (43%), Positives = 374/615 (60%), Gaps = 18/615 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GHAG EAA  A+KL  S  L T     IG MSCNPAIGG+ K  +VREID L
Sbjct: 3   FDVVVVGAGHAGIEAAIAASKLCDSVGLFTINIDNIGQMSCNPAIGGIAKSIVVREIDIL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQF++LN +KG AV  PR QAD+  Y+  M++ +++  NL ++Q EV 
Sbjct: 63  GGEMAKAIDATGIQFKMLNRRKGEAVWAPRAQADKLKYKEYMKKALMNIPNLYLVQDEVI 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +  +  +     +C  VV+TTGTFL G I IG    P GR  + PS +L   
Sbjct: 123 DILVKDNEVIGVKTKLGIEYQCKAVVVTTGTFLNGKIFIGDKVFPGGRAWEPPSTTLDEF 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-------KITNRQI 238
           + +F F   R KTGTPARLD +TI +D+ E    DE    FS  +D       +   +QI
Sbjct: 183 YKRFGFTLKRFKTGTPARLDKRTINFDELEPAPGDEPAPKFSLFSDPRGSYWFEPNKKQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F  +  HQIFLEPE
Sbjct: 243 NCYITYTNPKTHEIIRKNLHRTALYGGLIKGVGPRYCPSIEDKVVKFESKAQHQIFLEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +T  +YPNG+ST+LPE+IQ +  RTI GLE V +IRP YAIEYD ++P EL+PTLETK
Sbjct: 303 GEDTIEIYPNGLSTSLPEDIQQEMYRTIKGLENVVLIRPAYAIEYDIVDPLELYPTLETK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI+GLF AG  NGTTGYEEAA QG++AGIN+  ++N  + I   R+ SYIG+M +DL +K
Sbjct: 363 KINGLFHAGNFNGTTGYEEAAGQGILAGINAGLRANNKEPIILPRSISYIGLMAEDLATK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            ++EPYR+FTSR+EYR+S+R DNA  RL  +   LG + E   K   + +   N+     
Sbjct: 423 EIVEPYRLFTSRSEYRLSVRQDNAPERLLELSHNLGLLNEEDYKLAKELLNGINYYVDYY 482

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           KS          T I+  ++ K  T  + ++     I  L     D  + +  + +  +I
Sbjct: 483 KS--------QKTVINLGENPKPYTLSQIIAIE--GIDKLKEFGFDVPQ-NPYIKDETEI 531

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  ++    +++K  E   +P D DY ++  L+ E  EKL  LKP  + QA  I
Sbjct: 532 ILKYEYYIEKEKKLNEKLKMFEHIKLPPDMDYENVKGLTKEAIEKLKKLKPATIAQAKNI 591

Query: 599 EGMTPAALNLLLIYI 613
           +G+TPA+++ +LI++
Sbjct: 592 DGITPASISAILIHM 606


>gi|260887477|ref|ZP_05898740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sputigena ATCC 35185]
 gi|260862764|gb|EEX77264.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sputigena ATCC 35185]
          Length = 633

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/617 (44%), Positives = 374/617 (60%), Gaps = 4/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD+IV+G GHAG EAA  AA LG  T L T     I  M CNP+IGG  K HLVRE
Sbjct: 8   IAGEYDIIVLGAGHAGVEAALAAANLGCRTLLATLSLDNIALMPCNPSIGGPAKSHLVRE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M   AD A +Q+R+LN  KGPAV   R Q D++ Y+  M+     QE L+V Q
Sbjct: 68  IDALGGAMAINADEAALQYRLLNTGKGPAVHALRAQEDKKAYQFRMKERCEQQEGLEVRQ 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E      IV +         V+L TGT+L+G I IG+     G  G   +  
Sbjct: 128 LLAEKILIEDKEARGIVAETGEAYLARAVILATGTYLKGRIVIGEHTTSGGPNGQRAAGE 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +      R KTGTPARLD +++ + K + Q  DE    FSFMT+K T  Q+ C 
Sbjct: 188 LSRSLRENGIKIMRFKTGTPARLDARSLDYRKMQLQPGDEGAQSFSFMTEKRTREQLPCY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II  NI  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEG +
Sbjct: 248 LTYTNEKTHEIIRANIDRAPMANGIIEGIGPRYCPSIESKILRFPDKDRHQLFLEPEGWH 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LP ++Q  F+ TIPGLEK  I+RPGYAIEYD I+P +L P+L  KKI 
Sbjct: 308 TEEVYVQGMSTSLPVDVQEAFLHTIPGLEKARIMRPGYAIEYDCIDPLQLLPSLMFKKIR 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAAAQGL+AGIN+            SR ++YIGV+IDDL +KG  
Sbjct: 368 GLFSAGQSNGTSGYEEAAAQGLMAGINAVHYIRGKAPFVLSRAEAYIGVLIDDLVTKGTE 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT  G  +G + E R ++F K        R  L++ 
Sbjct: 428 EPYRMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVKEDRWQKFLKKKNGIIEARKTLENT 487

Query: 482 VL--TSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VL  + +NL+    +     +T T+  +FL  P+     L S+     + +  V E+L+I
Sbjct: 488 VLHPSVENLARLESAGLAPIRTSTSLADFLRRPEMDYAKLASLF-GLERLAPEVEEQLEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q  + + ++  E R +P D DY+ +P+L +E +EKL+ ++P ++ QAS+I
Sbjct: 547 AIRYEGYIKKQQEQVERLEHLESRRLPVDLDYALVPSLRDEAREKLAAVRPLSVGQASRI 606

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA +++LLI++++
Sbjct: 607 SGVSPADISVLLIWLEQ 623


>gi|116514944|ref|YP_813850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274324|sp|Q047G0|MNMG_LACDB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116094259|gb|ABJ59412.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 631

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 375/622 (60%), Gaps = 13/622 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +   D +T+ Q 
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTD-QT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPE
Sbjct: 244 SCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK
Sbjct: 304 GRKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  L+ AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +K
Sbjct: 364 RIKHLYTAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I +    R+A+++ +   ++  L
Sbjct: 424 GTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDD---DRYAEFLAKKELIQEDL 480

Query: 479 KSL-VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  +T     + +      G+T       A  FL  P  +++++  +          V
Sbjct: 481 DRLGEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L
Sbjct: 541 KEQVEIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ PA L +L +Y++
Sbjct: 601 AQAERISGVNPADLAILSVYVQ 622


>gi|256854959|ref|ZP_05560320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus faecalis T8]
 gi|307296565|ref|ZP_07576386.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0411]
 gi|256709472|gb|EEU24519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus faecalis T8]
 gi|306495992|gb|EFM65579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0411]
 gi|315030088|gb|EFT42020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4000]
          Length = 632

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 383/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+  K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINATLKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|163814996|ref|ZP_02206383.1| hypothetical protein COPEUT_01149 [Coprococcus eutactus ATCC 27759]
 gi|158449679|gb|EDP26674.1| hypothetical protein COPEUT_01149 [Coprococcus eutactus ATCC 27759]
          Length = 630

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 377/622 (60%), Gaps = 11/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++  YDV+++G GHAGCEAA  +A+LG +T + T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VLDEEYDVVIVGAGHAGCEAALASARLGLNTIIFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + +NL + 
Sbjct: 63  EIDALGGEMGKNIDKTYIQSKMLNSSKGPAVHSLRAQADKANYSRTMKYTLENTDNLTLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    +  I+  +     +  +   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSEILVDDGIVKGVKTYSGATYKAKAVVLCTGTYLKARCIYGDVVYHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S         R KTGTPARLD +TI + + E+Q  DE+++PFSF   +  I   QI
Sbjct: 183 HLSDSMKNAGISIRRFKTGTPARLDKRTIDFSQMEEQKGDEKIVPFSFTNTESDIKREQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN +TH II  NI+ S ++SG I+  GPRYCPSIEDK+ +F +++ HQIF+EPE
Sbjct: 243 SCWLCYTNEKTHEIIRNNIERSPLFSGVIEGTGPRYCPSIEDKVTKFPDKSRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q+  I ++ GLE   IIR  YAIEYD IN   L P+LE K
Sbjct: 303 GEFTNEMYMGGMSSSLPEDVQYDMIHSMKGLENAKIIRNAYAIEYDCINAINLKPSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQING++GYEEAAAQGL+AGIN+ARK      +   R+ +YIGV+IDDL +K
Sbjct: 363 TISGLFGAGQINGSSGYEEAAAQGLMAGINAARKVQGKTPVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG  +G I +   +R++K+I +   +   +
Sbjct: 423 ETSEPYRMMTSRAEYRLLLRQDNADIRLTDIGHDIGLIDD---ERYSKFILKKKQIEKEI 479

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  T    ++T   F   K     +TA    E +  P+ S +++  I     K    V
Sbjct: 480 YRLENTMVGANATIQKFLEKKNSTGLKTAASLAELIRRPELSYEDIEEIDEGREKLPDDV 539

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE++ I   Y  Y  RQ  +  + K  E R +P D DY  +  L  E ++KLS ++P N+
Sbjct: 540 IEQINITIKYKGYIDRQNQQVHQFKKLESRRLPDDIDYEQIKNLRLEARQKLSKIRPENI 599

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QAS+I G++PA +++LL+Y+K
Sbjct: 600 GQASRISGVSPADISVLLVYMK 621


>gi|326509425|dbj|BAJ91629.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 716

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/620 (42%), Positives = 378/620 (60%), Gaps = 10/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 56  LRERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 115

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---D 118
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL   +
Sbjct: 116 VDALGGDIGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAMEMRKVVESTQNLFIRE 175

Query: 119 VIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  EV  G N     + +    D       +VVLTTGTF+ G I +G+  +PAGR G+S
Sbjct: 176 AMATEVMIGKNDSVEGVRTFFGMD---FYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 232

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
            S+ L  +  +  F+T RLKTGTP R+D +T+ + + E Q  DE +  FSF  +  T R 
Sbjct: 233 ASHGLTENLQQLGFETDRLKTGTPPRIDRRTVDFSRLEAQHGDEEVGWFSFDPEFHTERE 292

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLE
Sbjct: 293 QMCCYLTRTTKETHQIVTDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLE 352

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L 
Sbjct: 353 PEGRDVPELYLQGFSTGLPERLQLPLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLM 412

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK+  GLF +GQINGTTGYEEAAAQG+V+GIN+AR S+    I   R  SYIG +IDDL 
Sbjct: 413 TKRFEGLFFSGQINGTTGYEEAAAQGIVSGINAARHSDGKPLIVLERESSYIGTLIDDLV 472

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K + EPYRM TSR+E+R+  R DNAD+RLTP G ++G I +RR + +          + 
Sbjct: 473 TKDLREPYRMLTSRSEHRLLFRSDNADSRLTPFGREIGLIDDRRWELYKSKQARIKEEKE 532

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            LK   ++    ++  T++S +   ++ T    L  P    + L          S +  +
Sbjct: 533 RLKHTRVSGVEFAAEVTAVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSPIEKD 592

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I+  Y  +  RQ  + ++I  +E R +P+D DY S+  LS E +EKLS ++P  L Q
Sbjct: 593 CVEIDIKYEGFIARQQSQLQQIINQEHRKLPEDLDYHSMLNLSLEAREKLSKVRPQTLGQ 652

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           A +I G++PA + +LLI ++
Sbjct: 653 AGRIGGVSPADMTVLLISME 672


>gi|222824097|ref|YP_002575671.1| glucose inhibited division protein A [Campylobacter lari RM2100]
 gi|222539319|gb|ACM64420.1| glucose inhibited division protein A [Campylobacter lari RM2100]
          Length = 617

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/612 (44%), Positives = 367/612 (59%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+EIDA+
Sbjct: 2   FDVIVIGGGHAGIEASAAAARMGKKTLLLTTLVEQIGAASCNPAIGGLAKGHLVKEIDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG++ D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGQITDEAGIQFRILNESKGVAVRGSRAQIDMDAYRICARNKLLKLQNLEISQEQVL 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      ++LTTGTFL G+IHIG+ K+ AGR+G+  S SL   
Sbjct: 122 SLIIENDEVKGVKTNLENTYFAKKIILTTGTFLNGLIHIGEKKLQAGRVGELASVSLGEY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGT  R+D K+I +   E Q  DE   PFSF T   T  Q+ C I RT
Sbjct: 182 LKQSGLKIGRLKTGTCPRVDAKSIDFSVLEIQNGDENPKPFSFKTKNFTPNQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL+TH II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+  +    
Sbjct: 242 NLKTHEIIKDNFYRAPLFTGQIEGIGPRYCPSIEDKINRFSDKESHHLFIEPQTKDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q   +R+I G E   I R GYAIEYDYI+P EL  TLETKKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIAMLRSIKGFENAKITRFGYAIEYDYIDPTELRHTLETKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN+       D     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINAVLSIENKDPFILGRDEAYIGVLIDDLVLKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR +NA  RL   G     + +          Q  +     L     T 
Sbjct: 422 MFTSRAEYRLLLREENAILRLGEYGYNFKLLSDDDFAYINNIKQNVSKGLDFLLQTTWTP 481

Query: 486 KNLSSTSI-SFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++  + S K++  T      + ++   F+++ L ++           +  +  E+ Y
Sbjct: 482 NNKNNEFLQSIKEEKITSIINLQKIVARASFNVEKLKALDKIFENMDEYSLNEILSEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K      IP++FD+ S+  LSNE+ EKL    P  +  AS+I G+T
Sbjct: 542 YHYIAMQKAQIEKMKNLSDLKIPENFDFKSVSGLSNEVVEKLQKFNPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIK 614
           PAAL++L IYIK
Sbjct: 602 PAALDILHIYIK 613


>gi|300811990|ref|ZP_07092446.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497016|gb|EFK32082.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|325685112|gb|EGD27243.1| glucose inhibited division protein A [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 631

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 375/622 (60%), Gaps = 13/622 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +   D +T+ Q 
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTD-QT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPE
Sbjct: 244 SCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK
Sbjct: 304 GRKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +K
Sbjct: 364 RIKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I +    R+A+++ +   ++  L
Sbjct: 424 GTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDD---DRYAEFLVKKELIQEDL 480

Query: 479 KSL-VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  +T     + +      G+T       A  FL  P  +++++  +          V
Sbjct: 481 DRLHEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EK + ++P  L
Sbjct: 541 KEQVEIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKFAKIRPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ PA L +L +YI+
Sbjct: 601 AQAERISGVNPADLAILSVYIQ 622


>gi|227529883|ref|ZP_03959932.1| glucose-inhibited division protein A [Lactobacillus vaginalis ATCC
           49540]
 gi|227350187|gb|EEJ40478.1| glucose-inhibited division protein A [Lactobacillus vaginalis ATCC
           49540]
          Length = 632

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/620 (42%), Positives = 372/620 (60%), Gaps = 9/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 13  NYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  +M+  I  Q NLD+ Q  V
Sbjct: 73  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRSMKETIEKQPNLDLRQATV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++G TI +++TE+Q  D+ +  FSF T        + QI C
Sbjct: 193 NLEELGFDLERFKTGTPPRINGNTIHYNETEEQPGDKEVHHFSFDTPDDHYLPLSEQISC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I +N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 253 WLTYTNPGTHELIRDNLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKSRHQIFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 313 DTDEWYVDGLSTSMPEEIQQKILHSVKGLEDAQLMRPGYAIEYDVVAPYQLHPTLETKLV 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALGKKPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G ++G + + R  +  K  ++     + LKS
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMGKGHEIGLVSDERYAKMEKKEKQVQDEIARLKS 492

Query: 481 LVLTSKNLSSTS-ISFKQDGKTR---TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
             L   N      I    D + +   TA +F+  P  + + L    P  A +    VIE+
Sbjct: 493 EKLKPNNDEVNQFIEAHGDNRLKDAITAADFIKRPYVNYETLMKFIPAPAEELDRQVIEQ 552

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  +   +K  E + IP + DY  +  L+ E ++KL  ++P  L QA
Sbjct: 553 VEIQLKYAGYIKKEEEKVARLKRMEAKRIPANIDYEKVDGLATEGRQKLEKIRPETLAQA 612

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+ PA L +L +YI+K
Sbjct: 613 SRISGVNPADLAILSVYIRK 632


>gi|194476846|ref|YP_002049025.1| glucose-inhibited division protein A [Paulinella chromatophora]
 gi|171191853|gb|ACB42815.1| glucose-inhibited division protein A [Paulinella chromatophora]
          Length = 638

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 383/622 (61%), Gaps = 16/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++++IV+GGGHAGCEAA  AA+LG STAL +     IG   CNPA+GG  K  LV E+DA
Sbjct: 10  TFELIVVGGGHAGCEAAIAAARLGISTALFSLNLDRIGWQPCNPAVGGPAKSQLVHEVDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++G++ADA  +Q RVLN  +GPAV   R Q D+  Y   M + + +  NL + +  V
Sbjct: 70  LGGIIGKLADATALQKRVLNSSRGPAVWALRAQTDKRQYACQMLQTLQNTPNLALREAMV 129

Query: 125 AGF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                    NT  N++  +     S+     ++LTTGTFL G I +GK  +PAGR G++P
Sbjct: 130 TSIETVNSSNTGINVVCGVRTYFGSLYAGKAIILTTGTFLGGQIWVGKQSMPAGRAGEAP 189

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +     F   RLKTGTPAR+D ++I     E Q ++     FSF     I+++Q
Sbjct: 190 AEGLTENLRNLGFIIERLKTGTPARVDRRSISIHALEAQPSNASNRFFSFDPSLWISSKQ 249

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +TRT   TH++I +N+  + IY G I+S GPRYCPSIEDK+VRF ++  HQIFLEP
Sbjct: 250 MNCYMTRTTSSTHKLIRQNLHLTPIYGGSIESKGPRYCPSIEDKVVRFADKESHQIFLEP 309

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE +Q   +RT+PGLE   +++P YA++YDY+   +L  TLET
Sbjct: 310 EGRDTPELYIQGFSTGLPERLQLALLRTLPGLENCVMLKPAYAVDYDYLPATQLKSTLET 369

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ++GLF AGQINGTTGYEEAAAQGLVAG+N++R  +    I F+R +SYIG +IDDL  
Sbjct: 370 KHVAGLFCAGQINGTTGYEEAAAQGLVAGLNASRFISGEKTITFARENSYIGTLIDDLVK 429

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           + + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I +RR + +   +Q     ++ 
Sbjct: 430 QNLREPYRVLTSRSEYRLTLRGDNADRRLTPLGYEIGLIDKRRWELYQHKLQAIENEKNR 489

Query: 478 LKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           L+ + L   +      +S T +S K    + T  E L  P     +L      +      
Sbjct: 490 LEKVRLKVTDFANSVIVSETGVSIK---GSITLAELLRRPGMHAIDLVRHGLMSDNLRKD 546

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E ++I++ Y  Y  RQ  +  ++K +E + IP D +Y S+  LS E +E LS +KP N
Sbjct: 547 VRESVEIDTKYRGYLSRQQQQIDQVKKQEHKPIPMDTNYLSIHTLSKEARENLSKIKPTN 606

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           L QA++I G++ A +  L+I++
Sbjct: 607 LGQAARIPGVSQADMTALIIWL 628


>gi|317054821|ref|YP_004103288.1| glucose inhibited division protein A [Ruminococcus albus 7]
 gi|315447090|gb|ADU20654.1| glucose inhibited division protein A [Ruminococcus albus 7]
          Length = 620

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/615 (42%), Positives = 372/615 (60%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D+IVIG GHAGCEAA   A+LG  TAL T     + +M CNP+IGG  KGHLVREIDA
Sbjct: 3   NFDIIVIGAGHAGCEAALAGARLGLKTALFTITLDAVANMPCNPSIGGTAKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR AD   IQ R+LN  KGPAV   R Q DR  Y   M++ I   E L + Q E+
Sbjct: 63  LGGEMGRAADKTLIQSRMLNRGKGPAVHSLRAQIDRMAYHNLMKKTIEDTEGLYLKQAEI 122

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               F  +   +  +         C  V++ +GT+L G IH+G     +G     P+  L
Sbjct: 123 TDVLFEDDGKTVRGVRTHLGVEYGCRAVIIASGTYLNGEIHVGTTTYASGPDSVLPARRL 182

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S  +      R KTGTPAR+  ++I +DK E Q  DE + PFSF  +     +++C +
Sbjct: 183 SDSLKEAGMTLRRFKTGTPARVHKRSIDFDKLEVQHGDEDIQPFSFTNEVPPENKVDCYV 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETH++IM+NI  S IYSG I + GPRYCPSIEDKI+RF ++  HQ+F+EP GL+T
Sbjct: 243 AYTNAETHKVIMDNIHLSPIYSGRIHAIGPRYCPSIEDKIMRFSDKPRHQLFIEPMGLDT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  Y  G+S++LP ++Q +F+RTI GLE V I+R  YAIEYD  +P +L PTLE K+  G
Sbjct: 303 EEYYLQGMSSSLPVDVQLKFLRTIKGLENVEIMRNAYAIEYDCCDPNDLLPTLEFKEFHG 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ NGT+GYEEAAAQGLVAGIN+A K    + +   R  SYIG ++DDL +KGV +
Sbjct: 363 IYGAGQFNGTSGYEEAAAQGLVAGINAALKLKGEEPMVLDRASSYIGTLVDDLCTKGVSD 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYRM TSR+EYR+ LR DNAD RLT  G ++G I + R   F K  ++       + ++ 
Sbjct: 423 PYRMLTSRSEYRLLLRQDNADLRLTETGHRVGLISDERYAAFTKKKEQIEAEVKRVSAIN 482

Query: 482 VLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +  S+ L+   +S   D         + +  P  + + L  I P+  +    V E++++ 
Sbjct: 483 IAPSEELNEYLVSQGTDPINNGIKLTQLIRRPQLTYKGLAFIDPERPELPDDVCEQVELT 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q+ +   ++  E + IP++ DYS + +L  E  EKL+ ++P ++ QAS+I 
Sbjct: 543 IKYEGYIKIQLEQVAAMRKLENKKIPENIDYSKVGSLRLEAAEKLAKIRPLSVGQASRIS 602

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +N+LL+Y++
Sbjct: 603 GVNPADINVLLVYLE 617


>gi|295101870|emb|CBK99415.1| glucose-inhibited division protein A [Faecalibacterium prausnitzii
           L2-6]
          Length = 623

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/615 (44%), Positives = 367/615 (59%), Gaps = 10/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DAL
Sbjct: 7   YDVIVIGAGHAGIEAAHAAAMLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q E+ 
Sbjct: 67  GGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEII 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L  S
Sbjct: 127 SIEVEDGHVKGVVTQLNGEYGAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGIT 243
                    R KTGTPAR+  ++I + K E Q  D    L PFSFMTD   + ++EC I 
Sbjct: 187 LKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPNNELQPFSFMTDAPMHNKVECWIA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT+
Sbjct: 247 YTNPETHRIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + GL
Sbjct: 307 EMYLQGASSSLPEDVQNAFYRSIKGFENIEIMRPAYAIEYDCVDPTSLEATLESKVVRGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AG+N+AR +     +   R  SY+G ++DDL +KGV++P
Sbjct: 367 YGAGQFNGTSGYEEAAAQGLLAGLNAARNALGESQLILPRQSSYLGTLVDDLVTKGVMDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKS 480
           YRM TSR+EYR++LR DNAD RLTPIG + G +   +  R+ KY Q    L   R  L  
Sbjct: 427 YRMMTSRSEYRLTLRQDNADTRLTPIGREYGLV---QDDRWTKYQQTQAVLDAERRRLHD 483

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             L + +L +   +       +   A E L  P+     +  +       + ++ ERL+ 
Sbjct: 484 AHLRTADLRAAMEAAGLAPAAEGGIAEELLRRPEIDYPLIAGMIGWGEGITPMLAERLET 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ     E+   EK LIP+DF Y+ L  L+ E +EKL+ ++P NL QA +I
Sbjct: 544 EIKYAGYIARQDRMIHEVARHEKTLIPEDFSYTELTGLTLEAREKLARIRPKNLGQAGRI 603

Query: 599 EGMTPAALNLLLIYI 613
            G++P+ +  L I +
Sbjct: 604 PGVSPSDVAQLSIAL 618


>gi|212697395|ref|ZP_03305523.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675587|gb|EEB35194.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 633

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/619 (43%), Positives = 373/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ SYD++VIG GHAGCEAA  +A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 9   IDESYDIVVIGAGHAGCEAALSSARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + +QENLD+ +
Sbjct: 69  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLENQENLDLFE 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + SI     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 129 QEVDKINVEDGKVKSIETVQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 188

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L +S  +  F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+    D    +Q 
Sbjct: 189 LSDSLEELGFSLRRFKTGTPARVDRKSLDLTKTEIQKGDENIVAFSFLNEGKDFSDKKQE 248

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN++ S +Y G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 249 ACYLTYTTEKTKEIIMENLERSPMYGGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 308

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 309 SLSTDEMYVQGVSSTLPQEVQKEFYKTIEGLEDCKIIRPAYGIEYDCLDSTNLKRSLESK 368

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGLVAGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 369 EIENLFFAGQINGSSGYEEAAGQGLVAGINAALKLRGDDPLILDRSDAYIGVLIDDLVTK 428

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFLRSL 477
           G  EPYRM TSR EYR+++R DNAD RLT    ++G +  ER QK   K       ++ L
Sbjct: 429 GTNEPYRMMTSRCEYRLTMRQDNADLRLTEKAHEIGLVTDERYQKMIEKRKNIEGEIKRL 488

Query: 478 LKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            K +V  S+  N     I         + ++ +  P+ + + L  +  D          +
Sbjct: 489 QKIMVGPSQENNKIMEEIGSSPLKTGYSLFDLIKRPELTYEKLEILDRDRPTLPKFQQIQ 548

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DY+ +  L  E  EKL+ +KP ++ QA
Sbjct: 549 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDTDYTKIKGLKKESAEKLNKIKPDSIGQA 608

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 609 SRISGVSPADINVLLIRLK 627


>gi|322391190|ref|ZP_08064662.1| glucose inhibited division protein A [Streptococcus peroris ATCC
           700780]
 gi|321145943|gb|EFX41332.1| glucose inhibited division protein A [Streptococcus peroris ATCC
           700780]
          Length = 638

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/615 (41%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DAL
Sbjct: 9   YDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL   Q  + 
Sbjct: 69  GGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTFRQTMID 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +       V++TTGT LRG I IG LK  +G      S +L ++
Sbjct: 129 EILVEDGKVFGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASVNLADN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ C +T
Sbjct: 189 LKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDETPNHFSYTSRDEDYLKDQVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T+
Sbjct: 249 YTNGHSHEIIQNNLYRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKKISGL
Sbjct: 309 EVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKKISGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTVEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L+S+ L
Sbjct: 429 YRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWTRFEIKKNQFENEMKRLESIKL 488

Query: 484 ---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIE 539
                 N    ++ FK      TA EFL  P+ S Q++ + I P A      +IE ++ E
Sbjct: 489 KPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIELIETE 548

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QAS+I 
Sbjct: 549 IKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQASRIS 608

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA +++L++Y++
Sbjct: 609 GVNPADISILMVYLE 623


>gi|319940178|ref|ZP_08014531.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus anginosus 1_2_62CV]
 gi|319810649|gb|EFW06979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus anginosus 1_2_62CV]
          Length = 638

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/616 (42%), Positives = 370/616 (60%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 8   SYDIVVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ +  QENL + Q  +
Sbjct: 68  LGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVQHQENLTLRQTII 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       VV+TTGT LRG I IG LK  +G      + +L +
Sbjct: 128 DEILVENGKVVGVKTATHQEFATKAVVVTTGTALRGEIIIGDLKYSSGPNHSLAAINLAD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +     F+ GR KTGTP R+   +I +++T+ Q  DE+   FS+ +  +     QI C +
Sbjct: 188 NLRDLGFEIGRFKTGTPPRVKASSINYEETDIQPGDEKANHFSYTSHDEDYLKEQIPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNGRSHEIIQNNLYRAPMFSGMVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKKISG
Sbjct: 308 EEVYIQGLSTSLPEDVQKDLVHSIKGLENAELMRTGYAIEYDMIMPHQLRATLETKKISG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG +E
Sbjct: 368 LFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +Y      L ++ 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADMRLTEIGRRVGLVDDERWLRFEIRKNQYETEMKRLSTIK 487

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQI 538
           L      N     + FK      TA EFL  P+ S Q++   +   A      +IE ++ 
Sbjct: 488 LKPIKETNEMVEKLGFKPLTDAVTAKEFLRRPEVSYQDVVKFVGSAAEDLDEKIIELIET 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QAS+I
Sbjct: 548 EVKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +++L++Y++
Sbjct: 608 SGVNPADISILMVYLE 623


>gi|227498805|ref|ZP_03928945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acidaminococcus sp. D21]
 gi|226904257|gb|EEH90175.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acidaminococcus sp. D21]
          Length = 626

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 275/625 (44%), Positives = 373/625 (59%), Gaps = 26/625 (4%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA++G  T L T     I  M CNP++GG  KGHLVREIDAL G MG 
Sbjct: 13  GAGHAGCEAALAAARMGKKTLLATLSMDNIALMPCNPSVGGPAKGHLVREIDALGGQMGI 72

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
            AD A IQ R+LN  KG AV+  R QAD+ LY   M+  + + ENLDV Q  +       
Sbjct: 73  AADEACIQMRMLNTGKGYAVQALRAQADKPLYHTIMKEVVENTENLDVKQLMIDELLVRG 132

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             +  IV +   +     V+L TGT+LRG I  G++   AG  G   +  L +S +K   
Sbjct: 133 GAVEGIVAETGEVFEAPCVILATGTYLRGRILYGEVAYMAGPNGQRSAMKLTDSLVKAGL 192

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHR 251
              R KTGTPAR+D +TI + +TE Q+ DE +  FSF++     +Q+ C +T TN  TH+
Sbjct: 193 TLMRFKTGTPARVDRRTIDFSRTEPQYGDEAVRNFSFISPITERQQVPCYLTYTNPRTHQ 252

Query: 252 IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS 311
           II +N+  S +++G I+  GPRYCPSIE KIVRF +++ HQ+FLEPEGL T+ +Y  G+S
Sbjct: 253 IIRDNLDRSCMFNGTIEGVGPRYCPSIEAKIVRFADKSRHQLFLEPEGLRTNEIYVQGMS 312

Query: 312 TALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING 371
           ++LP EIQ  F++TIPGLE   ++R GYAIEYD ++P +L  +LE K I GLF  GQ NG
Sbjct: 313 SSLPAEIQVAFMQTIPGLEHCKMMRAGYAIEYDCLDPLQLTASLEHKAIKGLFSCGQANG 372

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
           T+GYEEAAAQGL+AGIN+A K +        R+D+YIGV+IDDL +KG  EPYRM TSRA
Sbjct: 373 TSGYEEAAAQGLMAGINAALKLDHRPPFILGRSDAYIGVLIDDLVTKGTTEPYRMMTSRA 432

Query: 432 EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           EYR+ LR DNAD RLT  G  +G + + R   F K   E    R+L     L+ KNL+ +
Sbjct: 433 EYRLLLRQDNADLRLTQKGRNVGLVKDDRYTAFTKKRDEIE--RAL---FALSKKNLAPS 487

Query: 492 -----------SISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSLVIERLQ 537
                      S+  K    +    E L  P+ +   +Q  F + P     S +  E + 
Sbjct: 488 EENQQKIMAMGSVPLK---SSINMMELLRRPEITYEKLQQAFDLEP----LSPVAAEEVD 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +E  Y  Y  +Q  E       E RL+P D DYS+L  LS+E  EKL   +P ++ QAS+
Sbjct: 541 VEVKYKGYIDKQKQEVMRAMKLENRLLPDDIDYSALHELSSEAAEKLEKQRPLSIGQASR 600

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G++PA +++L++Y++    K  E
Sbjct: 601 ISGVSPADISVLMVYLESRRRKGEE 625


>gi|157738409|ref|YP_001491093.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Arcobacter butzleri RM4018]
 gi|205831487|sp|A8EWV0|MNMG_ARCB4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157700263|gb|ABV68423.1| glucose inhibited division protein A [Arcobacter butzleri RM4018]
          Length = 625

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/611 (44%), Positives = 363/611 (59%), Gaps = 6/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVVGGGHAGIEASLASARMGKKTLLITMLVEQIGAASCNPAIGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D  GIQFR+LN  KG AV+G R Q D + YR  M++   +  NL+V Q EV
Sbjct: 62  IGGEMGLCTDNTGIQFRILNASKGAAVQGSRAQIDMDKYREYMRKVCHNTPNLEVYQDEV 121

Query: 125 AGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                +  N +  +  +         VVLTTGTF+RG++HIG+ K  AGR  + PS +L 
Sbjct: 122 TALLVKNDNEVCGVKTKLTEEFIAKKVVLTTGTFMRGLVHIGENKYEAGRAWELPSTTLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
               +     GRLKTGTP+RLD  +I +   +    D    PFSF T+K      Q  C 
Sbjct: 182 TQLKELGLRVGRLKTGTPSRLDANSIDFSVMDMHGGDVNPAPFSFRTNKSDFAPTQFPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER+ HQ+FLEP+   
Sbjct: 242 ITYTNEKTHEIISSNFYRAPLFTGQIEGLGPRYCPSIEDKVNRFAERDRHQLFLEPQTAM 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+S++LP ++Q   I ++ GLE   IIR GYAIEYDY++P EL  TLETKKI 
Sbjct: 302 CTEYYINGMSSSLPIDVQKAMIHSVKGLENAKIIRYGYAIEYDYVDPTELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQIN TTGYEEAAAQGL+AGIN+    ++ +     R ++YIGV+IDDL +KG  
Sbjct: 362 NLYHAGQINATTGYEEAAAQGLIAGINACLSIDEKEPFILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR +NAD RL+  G K G I +   K+     +        + + 
Sbjct: 422 EPYRMFTSRAEYRLLLREENADLRLSQYGHKFGLIDDETIKKVENKRKTIEEAIEFMANE 481

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +TSK  +     SI  ++        + +      I     + P      + + E++ I
Sbjct: 482 WMTSKKETLELLESIGEEKINDRVLLVDLIGRNSIDIFKFEKLVPSFAHLDNYLKEQIII 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  + +++K   K  IP+ F Y  LP LSNE+ EKL   +P  +  AS I
Sbjct: 542 EAKYYRYIQKQQKQIEKMKKMLKATIPESFSYKGLPGLSNEVVEKLEKHRPPTIFNASLI 601

Query: 599 EGMTPAALNLL 609
            G+TPAAL+++
Sbjct: 602 SGVTPAALDII 612


>gi|118475109|ref|YP_892585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter fetus subsp. fetus 82-40]
 gi|205831518|sp|A0RQV2|MNMG_CAMFF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118414335|gb|ABK82755.1| glucose-inhibited division protein A [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 621

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 288/637 (45%), Positives = 382/637 (59%), Gaps = 41/637 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  AAK+GA T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDVIVVGGGHAGIEASLAAAKMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFR+LN  KGPAVRG R Q D + YR+ M+  +L+  NL+V Q E+
Sbjct: 62  LGGQMGLTTDACGIQFRLLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEVTQ-EI 120

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           A      + NII      DN+      +++TTGTFL G+IH+G  K+ AGR+G+  S SL
Sbjct: 121 ATEILTKDNNIIGVKTHLDNNY-GTKKLIITTGTFLNGLIHVGFNKLEAGRVGELSSKSL 179

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S    + + GRLKTGT  R+  K+I +   E+Q  D+   PFSF T +    Q+ C I
Sbjct: 180 SASLKSLNLEMGRLKTGTCPRVLAKSIDFSVLERQDGDQDPTPFSFRTKEFNKTQLPCYI 239

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN +TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R  H +F+EP+    
Sbjct: 240 AYTNEKTHEIIRSNFDRAPLFTGQIEGIGPRYCPSIEDKINRFGDRERHHLFIEPQTREA 299

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG ST+LP + Q + +R++ G +   I+R GYAIEYDY++P EL  TLETKKI+G
Sbjct: 300 TEYYINGFSTSLPYDAQVEMLRSVKGFQNAKIVRHGYAIEYDYVSPTELKHTLETKKING 359

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGL+AGIN+A      + +   R +SYIGV+IDDL +KG  E
Sbjct: 360 LYLAGQINGTTGYEEAAAQGLMAGINAALNLKTREPLILRRDESYIGVLIDDLVTKGTKE 419

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS-- 480
           PYRMFTSRAEYR+ LR DNA+ RL+  G  +G + +   +   K       L+S L+   
Sbjct: 420 PYRMFTSRAEYRLLLREDNANLRLSKYGYNVGLLPKEAFEEMLK-------LKSNLEKGM 472

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ--- 537
            +L +K++S            +   EFL+  D  I N            S  IE+L+   
Sbjct: 473 EILLTKDMSP----------NKENLEFLASIDEDIINEKVPLQKIAARKSFTIEKLRKLN 522

Query: 538 ---------------IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                           E+ Y  Y  +Q IE +++K      IPK  ++ S+  LSNE+ E
Sbjct: 523 EFFLNLDDKSLNQILTEAKYYHYIAQQQIEVEKMKGLLDIKIPKSLEFKSISGLSNEVVE 582

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+   P  L  AS I G+TP A+++L I IK +  K
Sbjct: 583 KLNKFAPPTLAAASNISGITPVAIDILHIAIKYHCQK 619


>gi|315151267|gb|EFT95283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0012]
          Length = 632

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 383/625 (61%), Gaps = 16/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   SYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEGNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE-CGI 242
              +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T D   N+  E C +
Sbjct: 188 HLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT
Sbjct: 248 TYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I  
Sbjct: 308 EEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS----LL 478
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G +   +++++A Y+ +   + +    L 
Sbjct: 428 PYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLV---KEEQYAAYLVKKAAVEAEIARLG 484

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           K  +  +K     L +   +  +DG    A +FL  P+ S Q +    P   +     VI
Sbjct: 485 KHRIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + 
Sbjct: 543 EQVEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+ PA +++L++YI++  +
Sbjct: 603 QASRISGVNPADISILMVYIEQGKI 627


>gi|331083513|ref|ZP_08332625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404206|gb|EGG83754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 627

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/634 (41%), Positives = 382/634 (60%), Gaps = 35/634 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV ++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 3   VLTENYDVAIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LNV KGPAV   R QAD++ Y   M++ + + E+L + 
Sbjct: 63  EIDALGGEMGKNIDKTFIQSKMLNVSKGPAVHSLRAQADKQEYTREMRKTLENTEHLTIR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E  ++  +     +  R   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVTKIMAEDGVVKGVKTYSGAEYRTKAVVLCTGTYLKARCIYGDISNETGPNGLQAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L NS  +   +  R KTGTPAR+D ++I + K E+QF DER++PFSF T  + +   QI
Sbjct: 183 YLTNSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFSTNPEDVQIDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPE
Sbjct: 243 SCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+ ++L+PTLE K
Sbjct: 303 GLSTNEMYIGGMSSSLPEDVQYEMYHSVPGLENAKIVRNAYAIEYDCIDARQLYPTLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF  GQ NG++GYEEAAAQGLVAGIN+A +    + +   R++SYIGV+IDDL +K
Sbjct: 363 NIKGLFSGGQFNGSSGYEEAAAQGLVAGINAAMEVLGREQLVLDRSESYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RL   G ++G + +          ++Y++++   
Sbjct: 423 ENREPYRMMTSRAEYRLLLRQDNADLRLREKGYQVGLVTQ----------EQYDYIQWKK 472

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFL-SYPDFSIQNLFS--------------ICP 523
           + +   ++ +    +     G  +   E L  Y    ++N  S              + P
Sbjct: 473 EKIEEETQRMEHVHV-----GAVKEVQELLEQYGSTPLKNGISLGDLIRRPELSYDIVAP 527

Query: 524 DARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             +K   L   V E++ I   Y  Y  RQ+ + +  K  E + +PKD DY ++  L  E 
Sbjct: 528 LDKKRPELPYDVREQININIKYDGYIRRQLKQVEGFKKLENKKLPKDIDYDAISGLRIEA 587

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           K+KL+  +P ++ QAS+I G++PA +++LL+Y++
Sbjct: 588 KQKLNAYRPISIGQASRIAGVSPADISVLLVYME 621


>gi|224437483|ref|ZP_03658445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter cinaedi CCUG 18818]
 gi|313143939|ref|ZP_07806132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter cinaedi CCUG 18818]
 gi|313128970|gb|EFR46587.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter cinaedi CCUG 18818]
          Length = 632

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/630 (43%), Positives = 375/630 (59%), Gaps = 32/630 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG EA+  +AK+GA T L+T     I   SCNPA+GGLGKGHLV+EIDAL
Sbjct: 3   YDVLVVGGGHAGLEASIASAKMGAKTHLLTLLIQNIALASCNPAVGGLGKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG + D  GIQFR+LN  KGPAVRG R Q D + Y +  +   L+  NL + Q  V 
Sbjct: 63  GGVMGEITDKCGIQFRILNSSKGPAVRGTRAQIDMDRYSIIAKDIALNTPNLTLSQESVE 122

Query: 126 GFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E++     I   +            V+LTTGTFLRG++HIG+ KI  GR G+    
Sbjct: 123 SLIYEQDSQGRFIAKGVKTNIGKTYYAKAVILTTGTFLRGLVHIGESKIQNGRFGEMSPQ 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L  S  +     GRLKTGT AR+DG++I + + E    D     FS  T      Q+ C
Sbjct: 183 NLSTSLQELGLSLGRLKTGTCARIDGRSIDFSRLETHSGDSNPPHFSHKTKDFAPTQLPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  HQ+FLEP+  
Sbjct: 243 FVTYTNEKTHNIIRSNFHRAPLFTGQIEGVGPRYCPSIEDKINRFADKERHQLFLEPQTQ 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG++T+LP ++Q + I +I GLE  +I R GYAIEYDY+ P EL+ TLETKK 
Sbjct: 303 EAVEYYINGLTTSLPIDVQEEMIHSIEGLENAHITRYGYAIEYDYVEPTELYHTLETKKC 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + LFLAGQINGTTGYEEAAAQG++AGIN+A  S K +    +R ++YIGVMIDDL +KG 
Sbjct: 363 ANLFLAGQINGTTGYEEAAAQGIMAGINAAL-SLKGESFSLARNEAYIGVMIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS 476
            EPYR+FTSRAEYR+ LR DNA  RL P    LG +     E+  +     I   N+L++
Sbjct: 422 KEPYRVFTSRAEYRLLLREDNAYLRLVPYAFALGLVTKEYYEKTMQDKEHIINTMNYLQN 481

Query: 477 -----------LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--P 523
                      +LKSL L+   +S  ++     G+              ++ L + C   
Sbjct: 482 NYLTPSQISLDMLKSLNLSP--ISDKTLLIHIIGREELE-------PHRLRTLLAKCGVE 532

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +    S   IE++ IES Y  Y  +Q  +  +++   +  IP+DF +  +P LS E+ EK
Sbjct: 533 NVESMSEKAIEQIFIESKYFDYIQKQKEQIGQMEQMLQVEIPRDFVFDKIPGLSLEVIEK 592

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           L    P +L +AS+I G+TPA++++L +YI
Sbjct: 593 LKKFTPKSLFEASEISGITPASIDVLHLYI 622


>gi|126701302|ref|YP_001090199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile 630]
 gi|255102893|ref|ZP_05331870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-63q42]
 gi|255308713|ref|ZP_05352884.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile ATCC 43255]
 gi|122973577|sp|Q181S8|MNMG_CLOD6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115252739|emb|CAJ70584.1| transfer RNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG (Glucose-inhibited division protein A) [Clostridium
           difficile]
          Length = 631

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 378/618 (61%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDAL
Sbjct: 9   YDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV 
Sbjct: 69  GGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEVV 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N++  +  +     +   V+L TG +L   I++G++    G      +  L +S
Sbjct: 129 EILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTDS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I  +Q  C +TRT
Sbjct: 189 LVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKKQEPCYLTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  +
Sbjct: 249 TEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKEM 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF 
Sbjct: 309 YIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLFS 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPYR
Sbjct: 369 AGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLVL 483
           M TSRAEYR+ LR DNAD RLT  G  +G + + R +RF   K   E  F R  LK+  +
Sbjct: 429 MMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVEKEFER--LKNERV 486

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQ 537
           T K ++S     ++ G T      + YEFL  P+ + + L  +   A    S  V E+  
Sbjct: 487 TPKEVNSL---LEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGDDVSREVKEQCV 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+
Sbjct: 544 IITKYEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLIY+++
Sbjct: 604 ISGVSPADISVLLIYLEQ 621


>gi|323486761|ref|ZP_08092080.1| hypothetical protein HMPREF9474_03831 [Clostridium symbiosum
           WAL-14163]
 gi|323694903|ref|ZP_08109053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium symbiosum WAL-14673]
 gi|323399900|gb|EGA92279.1| hypothetical protein HMPREF9474_03831 [Clostridium symbiosum
           WAL-14163]
 gi|323500993|gb|EGB16905.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium symbiosum WAL-14673]
          Length = 640

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 378/622 (60%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LTENYDIVVVGAGHAGCEAALAAARLGFETIIFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+  + + ++L + Q
Sbjct: 64  LDALGGEMGKNIDETFIQSKMLNQSKGPAVHSLRAQADKQAYTKRMRHTLENTKHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +   I  I     ++  C  V+L TGT+LR     G +  P G  G   +N 
Sbjct: 124 GEVCEILAKDGKIEGIKTFSGAVYYCKAVILATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L  S      +  R KTGTPAR+D ++I + K E+QF DER+IPFSF TD   +   Q+ 
Sbjct: 184 LTESLKNLGIEMYRFKTGTPARVDKRSIDFTKMEEQFGDERVIPFSFSTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEKTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKIRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  +LE K 
Sbjct: 304 LYTNEMYLAGMSSSLPEDVQFAMYRTVPGLENVKIVRNAYAIEYDCINSRQLKASLEFKN 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKIQGKEPIILDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLR 475
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G + +   +R     +   QE   + 
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSAIGHEIGLVSDELYERILWKESAIAQE---VT 480

Query: 476 SLLKSLVLTSKNLSSTSISFKQDG-KTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L K  +  +K +    +S      KT T   E +  P+     L  I P+       V 
Sbjct: 481 RLEKKTIGATKEVQEFLVSHDSTPLKTGTTLAELVRRPELDYVMLTEIDPERPSLPEDVA 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQM +  + K  E + + ++FDYS + +L  E  +KL++ KP N+ 
Sbjct: 541 EQININIKYEGYIRRQMQQVAQFKKMEGKKLDENFDYSEVKSLRKEAVQKLNLYKPANIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++L++++++
Sbjct: 601 QASRISGVSPADISVLMVHLEQ 622


>gi|325126644|gb|ADY85974.1| Glucose inhibited division protein A [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 631

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/622 (42%), Positives = 374/622 (60%), Gaps = 13/622 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQI 238
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +   D +T+ Q 
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTD-QT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPE
Sbjct: 244 SCWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK
Sbjct: 304 GRKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  L+ AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +K
Sbjct: 364 RIKHLYTAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I +    R+A+++ +   ++  L
Sbjct: 424 GTEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDD---DRYAEFLAKKELIQEDL 480

Query: 479 KSL-VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  +T     + +      G+T       A  FL  P  +++++  +          V
Sbjct: 481 DRLGEITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I   YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L
Sbjct: 541 KEQVEIYIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+ PA L +L +Y++
Sbjct: 601 AQAERISGVNPADLAILSVYVQ 622


>gi|260588824|ref|ZP_05854737.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Blautia hansenii DSM 20583]
 gi|260540603|gb|EEX21172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Blautia hansenii DSM 20583]
          Length = 627

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/634 (41%), Positives = 382/634 (60%), Gaps = 35/634 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV ++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 3   VLTENYDVAIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LNV KGPAV   R QAD++ Y   M++ + + E+L + 
Sbjct: 63  EIDALGGEMGKNIDKTFIQSKMLNVSKGPAVHSLRAQADKQEYTREMRKTLENTEHLTIR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E  ++  +     +  R   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVTKIMAEDGVVKGVKTYSGAEYRTKAVVLCTGTYLKARCIYGDISNETGPNGLQAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L NS  +   +  R KTGTPAR+D ++I + K E+QF DER++PFSF T  + +   QI
Sbjct: 183 YLTNSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFSTNPEDVQIDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPE
Sbjct: 243 SCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+ ++L+PTLE K
Sbjct: 303 GLSTNEMYIGGMSSSLPEDVQYEMYHSVPGLENAKIVRNAYAIEYDCIDARQLYPTLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF  GQ NG++GYEEAAAQGLVAGIN+A +    + +   R++SYIGV+IDDL +K
Sbjct: 363 NIKGLFSGGQFNGSSGYEEAAAQGLVAGINAAMEVLGREQLVLDRSESYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RL   G ++G + +          ++Y++++   
Sbjct: 423 ENREPYRMMTSRAEYRLLLRQDNADLRLREKGYQVGLVTQ----------EQYDYIQWKK 472

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFL-SYPDFSIQNLFS--------------ICP 523
           + +   ++ +    +     G  +   E L  Y    ++N  S              + P
Sbjct: 473 EKIEEETQRMEHIHV-----GAVKEVQELLQQYGSTPLKNGISLGDLIRRPELSYDIVAP 527

Query: 524 DARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             +K   L   V E++ I   Y  Y  RQ+ + +  K  E + +PKD DY ++  L  E 
Sbjct: 528 LDKKRPELPYDVREQININIKYDGYIRRQLKQVEGFKKLENKKLPKDIDYDAISGLRIEA 587

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           K+KL+  +P ++ QAS+I G++PA +++LL+Y++
Sbjct: 588 KQKLNAYRPISIGQASRIAGVSPADISVLLVYME 621


>gi|315636706|ref|ZP_07891936.1| glucose inhibited division protein A [Arcobacter butzleri JV22]
 gi|315479021|gb|EFU69724.1| glucose inhibited division protein A [Arcobacter butzleri JV22]
          Length = 625

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/622 (43%), Positives = 368/622 (59%), Gaps = 10/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVVGGGHAGIEASLASARMGKKTLLITMLVEQIGAASCNPAIGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D  GIQFR+LN  KG AV+G R Q D + YR  M++   +  NL+V Q EV
Sbjct: 62  IGGEMGLCTDNTGIQFRILNASKGAAVQGSRAQIDMDKYREYMRKVCHNTPNLEVYQDEV 121

Query: 125 AGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                +  N +  +  +         VVLTTGTF+RG++HIG+ K  AGR  + PS +L 
Sbjct: 122 TALLVKNGNEVCGVKTKLTEEFIAKKVVLTTGTFMRGLVHIGENKYEAGRAWELPSTTLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
               +     GRLKTGTP+RLD  +I +   +    D    PFSF T+K      Q  C 
Sbjct: 182 TQLKELGLRVGRLKTGTPSRLDANSIDFSVMDMHGGDVNPAPFSFRTNKSDFAPTQFPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER+ HQ+FLEP+   
Sbjct: 242 ITYTNEKTHEIISSNFYRAPLFTGQIEGLGPRYCPSIEDKVNRFAERDRHQLFLEPQTAM 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+S++LP ++Q   I ++ GLE   IIR GYAIEYDY++P EL  TLETKKI 
Sbjct: 302 CTEYYINGMSSSLPIDVQKAMIHSVKGLENAKIIRYGYAIEYDYVDPTELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQIN TTGYEEAAAQGL+AGIN+    ++ +     R ++YIGV+IDDL +KG  
Sbjct: 362 NLYHAGQINATTGYEEAAAQGLIAGINACLSIDEKEPFILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR +NAD RL+  G + G I +   K+     +        + + 
Sbjct: 422 EPYRMFTSRAEYRLLLREENADLRLSQYGYEFGLIDDETIKKVENKRKTIEEAIEFMANE 481

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +TSK  +     SI  ++        + +      I     + P      + + E++ I
Sbjct: 482 WMTSKKETLELLESIGEEKINDRVLLVDLIGRNSIDIFKFEKLVPSFAHLDNYLKEQIII 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  + +++K   K  IP+ F Y  LP LSNE+ EKL   +P  +  AS I
Sbjct: 542 EAKYYRYIQKQQKQIEKMKKMLKATIPESFSYKGLPGLSNEVVEKLEKHRPPTIFNASLI 601

Query: 599 EGMTPAALNL----LLIYIKKN 616
            G+TPAAL++    L I++K N
Sbjct: 602 SGVTPAALDIIHLNLNIFVKSN 623


>gi|257871381|ref|ZP_05651034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus gallinarum EG2]
 gi|257805545|gb|EEV34367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus gallinarum EG2]
          Length = 633

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/621 (42%), Positives = 375/621 (60%), Gaps = 11/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+G GHAG EAA  A+++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YEVIVVGAGHAGSEAALAASRMGCKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M++ I  ++NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYASEMKKTIEMEQNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  I   +V    +  +  +V++T GT LRG I IG+LK  +G     PS  L + 
Sbjct: 129 KLIVEDGICKGVVTATGARYQAKSVIITAGTALRGEIIIGELKYSSGPNNSQPSIGLADH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +   +  R KTGTP R+   TI +D TE Q  DE    FS+ T   +    Q  C +T
Sbjct: 189 LKELGLEIARFKTGTPPRVKSSTINYDVTEIQPGDEAPNHFSYSTPDSQYKTNQEPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGL+T+
Sbjct: 249 YTNEHTHQIINDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLDTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK I+ L
Sbjct: 309 EVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIANL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  EP
Sbjct: 369 FTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E    ++  Y+ +   +   ++ L  
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVEE---PQYQAYLTKKTAVEEEIQRLKK 485

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +  K   S     K+ G         A EFL  P+ + Q L              IE+++
Sbjct: 486 VRIKPTPSVQTFLKEKGTAPLKDGVLANEFLRRPEVNYQELLQFIEANPALKPKEIEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + + + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QAS+
Sbjct: 546 IQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYEAINGLATEAKQKLQKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++L++Y+++  +
Sbjct: 606 ISGVNPADISILMVYVEQGKI 626


>gi|167753844|ref|ZP_02425971.1| hypothetical protein ALIPUT_02129 [Alistipes putredinis DSM 17216]
 gi|167658469|gb|EDS02599.1| hypothetical protein ALIPUT_02129 [Alistipes putredinis DSM 17216]
          Length = 630

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/622 (42%), Positives = 375/622 (60%), Gaps = 16/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+GGGHAGCEAA+ AA+LG+ T L+T   + +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDIIVVGGGHAGCEAASAAARLGSRTLLVTMDMTKLADMSCNPAVGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR+ D   +QFR+LN  KG A+  PR Q D+  +    +R + +  NL + Q    
Sbjct: 65  GGQMGRITDLTAVQFRMLNRSKGAAMWSPRAQCDKSRFSAEWRRTLENTPNLYLWQDTAV 124

Query: 126 GF-------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                       +  +  I  Q         V+LT GTFL GV++ G+     GR GDS 
Sbjct: 125 ELLFGQRPAEEGRPQVRGIRTQMGVEFSADCVILTAGTFLAGVMYCGRSHAEGGRAGDSA 184

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           S+ +  S +   F+ GR+KTGTPARLD +TI ++  E Q+ DE    FSF  D      Q
Sbjct: 185 SHGVTESLVAMGFEAGRMKTGTPARLDARTINFEILEPQYGDENPSKFSFSADTHPVQNQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +  T+ + H I+ +    S +++G I+  GPRYCPSIEDK+  F +++ HQ+FLEP
Sbjct: 245 LPCFLVYTSKKVHDILRKGFGDSPLFNGTIRGIGPRYCPSIEDKLNTFADKDQHQLFLEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+  Y NG S++LP +IQ + +  I G E ++I RPGYAIEYDY  P +L  +LET
Sbjct: 305 EGRSTNEYYLNGFSSSLPWDIQWEALHAIEGFEDLHIFRPGYAIEYDYFLPTQLHHSLET 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GL+ AGQINGTTGYEEA AQG++AGIN+ R+    + +  +R ++YIGV+IDDL +
Sbjct: 365 KLVDGLYFAGQINGTTGYEEAGAQGVMAGINAHRRRMGEEPLVLARDEAYIGVLIDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAEYRI LR DNAD RLTPIG K+G I ++R   F K  +    L + 
Sbjct: 425 KGVDEPYRMFTSRAEYRILLRQDNADIRLTPIGYKIGLISQKRYDSFCKKNRLVESLVAF 484

Query: 478 LKSLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKF------S 529
            + L +    ++    S   D   + R  ++ L   + +   L  + P    F       
Sbjct: 485 ARGLSVKPDEINDCLKSLGCDAISQGRKLHDLLMRNNVTFDLLSGVLPKLGDFLREQEMD 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + V+E  +I+  Y  Y  R+   A ++   E   IP DFD+ S+ AL+ E ++KL+ ++P
Sbjct: 545 AEVVEEAEIQIKYKGYIEREKFIADKLHRLENIRIPADFDFHSMNALTIEARQKLTRIRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLI 611
             + QAS+I G++PA +N+LL+
Sbjct: 605 ATIGQASRIPGVSPADVNVLLV 626


>gi|255657632|ref|ZP_05403041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-23m63]
 gi|296452687|ref|ZP_06894378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP08]
 gi|296880061|ref|ZP_06904030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP07]
 gi|296258469|gb|EFH05373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP08]
 gi|296428928|gb|EFH14806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP07]
          Length = 631

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 377/618 (61%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDAL
Sbjct: 9   YDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV 
Sbjct: 69  GGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEVV 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N++  +  +     +   V+L TG +L   I++G++    G      +  L +S
Sbjct: 129 EILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTDS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I   Q  C +TRT
Sbjct: 189 LVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKEQEPCYLTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  +
Sbjct: 249 TEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKEM 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF 
Sbjct: 309 YIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLFS 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPYR
Sbjct: 369 AGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLVL 483
           M TSRAEYR+ LR DNAD RLT  G  +G + + R +RF   K   E  F R  LK+  +
Sbjct: 429 MMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVEKEFER--LKNERV 486

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQ 537
           T K ++S     ++ G T      + YEFL  P+ + + L  +   A    S  V E+  
Sbjct: 487 TPKEVNSL---LEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGEDVSREVKEQCV 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+
Sbjct: 544 IITKYEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLIY+++
Sbjct: 604 ISGVSPADISVLLIYLEQ 621


>gi|239630796|ref|ZP_04673827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067923|ref|YP_003789946.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
 gi|239527079|gb|EEQ66080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300440330|gb|ADK20096.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
          Length = 633

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIEFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|332881635|ref|ZP_08449283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680274|gb|EGJ53223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 623

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/627 (42%), Positives = 379/627 (60%), Gaps = 25/627 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAAAASANMGAQTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q +V 
Sbjct: 65  GGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDQVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +    +  IR   V+LTTGTFL G++HIG  ++P GR+ +  S  L  S
Sbjct: 125 ELLVEHGEVAGVKTYFDVTIRARCVILTTGTFLNGLMHIGHTQLPGGRVAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +   + GR+KTGTP R+DG+++ +++ E Q  +     FSFM      +Q+ C    T
Sbjct: 185 IARHGINYGRMKTGTPVRIDGRSVHFEEMEIQEGEHDYHKFSFMGRDRQLKQLPCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +Y+G I+S GPRYCPSIE K+V F ER+ HQ+FLEPEG +T   
Sbjct: 245 NPEVHEVLRSGLPDSPLYNGQIQSIGPRYCPSIETKLVTFPERDQHQLFLEPEGESTQEY 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP  IQ + ++ IP    + I RPGYAIEYDY +P +L+ TLE+K + GLF+
Sbjct: 305 YLNGFSSSLPLHIQIEALKKIPAFRDLAIYRPGYAIEYDYFDPTQLYHTLESKILPGLFM 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R +SYIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIVAGINAALKCSGGEPFVMHRDESYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ----------KRFAKYIQEYNFLR 475
           MFTSRAEYRI LR D+AD RLT    ++G     R           +R   + +E++   
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERSYQIGLATRERYDHWLSKKDAVERIVSFCKEFSLKP 484

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL--- 531
           +L+ S +   + L +T + +         +E ++ P  +++N+   I P      +L   
Sbjct: 485 ALINSGL---EALGTTPLKYGC-----KLFELINRPQITVKNIAEHIAPLKALLDTLTDR 536

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              +IE  ++   Y  Y  R+ I A +++  E   I   FDY ++ +LS E ++KL  + 
Sbjct: 537 RDEIIEAAEVLIKYHGYIARERIIADKMQRLESIKIKGRFDYKNMNSLSTEARQKLEKIN 596

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QA +I G++P+ +N+LL+ + +
Sbjct: 597 PETLAQAGRIPGVSPSDINVLLVLLGR 623


>gi|191639863|ref|YP_001989029.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei BL23]
 gi|227533514|ref|ZP_03963563.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (glucose-inhibited division protein A) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|190714165|emb|CAQ68171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Lactobacillus
           casei BL23]
 gi|227188843|gb|EEI68910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (glucose-inhibited division protein A) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|327383977|gb|AEA55453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei LC2W]
 gi|327387161|gb|AEA58635.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei BD-II]
          Length = 633

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|254977336|ref|ZP_05273808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-66c26]
 gi|255094667|ref|ZP_05324145.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile CIP 107932]
 gi|255316420|ref|ZP_05358003.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-76w55]
 gi|255519080|ref|ZP_05386756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-97b34]
 gi|255652263|ref|ZP_05399165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-37x79]
 gi|260685217|ref|YP_003216502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile CD196]
 gi|260688876|ref|YP_003220010.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile R20291]
 gi|306521978|ref|ZP_07408325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-32g58]
 gi|260211380|emb|CBA67034.1| glucose inhibited division protein A [Clostridium difficile CD196]
 gi|260214893|emb|CBE07698.1| glucose inhibited division protein A [Clostridium difficile R20291]
          Length = 631

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/618 (43%), Positives = 378/618 (61%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDAL
Sbjct: 9   YDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV 
Sbjct: 69  GGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEVV 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N++  +  +     +   V+L TG +L   I++G++    G      +  L +S
Sbjct: 129 EILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTDS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I  +Q  C +TRT
Sbjct: 189 LVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKKQEPCYLTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  +
Sbjct: 249 TEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKEM 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF 
Sbjct: 309 YIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLFS 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPYR
Sbjct: 369 AGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSLVL 483
           M TSRAEYR+ LR DNAD RLT  G  +G + + R +RF   K   +  F R  LK+  +
Sbjct: 429 MMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVDKEFER--LKNERV 486

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQ 537
           T K ++S     ++ G T      + YEFL  P+ + + L  +   A    S  V E+  
Sbjct: 487 TPKEVNSL---LEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGEDVSREVKEQCV 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+
Sbjct: 544 IITKYEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LLIY+++
Sbjct: 604 ISGVSPADISVLLIYLEQ 621


>gi|224418682|ref|ZP_03656688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter canadensis MIT 98-5491]
 gi|253826781|ref|ZP_04869666.1| glucose-inhibited division protein A [Helicobacter canadensis MIT
           98-5491]
 gi|313142204|ref|ZP_07804397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter canadensis MIT 98-5491]
 gi|253510187|gb|EES88846.1| glucose-inhibited division protein A [Helicobacter canadensis MIT
           98-5491]
 gi|313131235|gb|EFR48852.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter canadensis MIT 98-5491]
          Length = 639

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 283/639 (44%), Positives = 386/639 (60%), Gaps = 29/639 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+ V+AK G  T L+T     IG+ SCNPA+GGLGKGHLV+E+DA
Sbjct: 2   TYDVIVIGGGHAGIEASIVSAKRGCKTLLLTMLVEQIGAASCNPAVGGLGKGHLVKEVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGE 123
           L G+MG + D +GIQFR LN  KGPAVRG R Q D + Y++ + REI  Q +NL+V Q  
Sbjct: 62  LGGVMGYITDKSGIQFRTLNASKGPAVRGTRAQIDMDRYKI-IAREICYQTKNLEVSQQI 120

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +      +     V+LTTGTFLRG IHIG+     GR G+ P+  L 
Sbjct: 121 AESLLLENNCIVGVKTNIGKVYHAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELG 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK------ITNRQ 237
               +   + GRLKTGT AR+   +I ++  EK + D     FS  T K       +  Q
Sbjct: 181 ECLRELGLEVGRLKTGTCARIKASSINFEALEKHYGDMPPPFFSKQTQKELGNKEFSPTQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II  N   + ++ G I+  GPRYCPSIEDK+ RF ++  HQ+FLEP
Sbjct: 241 LPCYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           + L  +  Y NG++T+LP ++Q + I +I GLE   I+R GYAIEYDYINP EL  TLET
Sbjct: 301 QTLEANEYYINGLTTSLPFDVQEEMIHSIEGLENAEIVRYGYAIEYDYINPTELKHTLET 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI  L+ AGQINGTTGYEEAAAQG+ AGIN++      + I   R ++YIGVMIDDL +
Sbjct: 361 KKIKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGKEEITLKRNEAYIGVMIDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRMF+SRAEYR+ LR  NA  RL  +  KLG +   +++ +   +Q+ + ++  
Sbjct: 421 KGTKEPYRMFSSRAEYRLLLREGNAIFRLGELAYKLGLM---QEEEYQALLQDKSDIQKG 477

Query: 478 LKSLVLTSKNLSSTSISF-------KQDGKT--RTAYEFLSYPDFSIQNLFSICPDA-RK 527
           L+ L  T+   +   ++F       K   KT  RT     S+    +  +  I P    K
Sbjct: 478 LQWLDSTALTPTQEILTFLDSIQEEKISDKTIWRTIVGRRSFDLPKLLKIGEIIPTPFEK 537

Query: 528 FSSLVIERLQIESSYAAYTGRQ--MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           FS   +E + +E+ YA Y  +Q  +I+  +     K  IP DF + ++P LS E+ EKL 
Sbjct: 538 FSHRALEEILVEAKYANYIQKQQSLIDNMDKMLSIK--IPADFSFDTIPGLSLEVVEKLK 595

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYI----KKNTVKL 620
              P +L +AS+I G+TPA+L +L +YI    KK +++L
Sbjct: 596 KFTPKSLFEASEISGVTPASLEVLQLYIHLYHKKKSLEL 634


>gi|283954746|ref|ZP_06372262.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793586|gb|EFC32339.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 619

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/618 (44%), Positives = 374/618 (60%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGIAVQGSRAQIDMDKYRIIARNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 TLIIENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
               D   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLDLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKSNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + +I G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQAQMLHSIKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGLMAGINASLSIDTKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+    FA YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLFLREENAILRLGKYGYDLGLLSEQ---DFA-YIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F+++ L  + P      +  +  +
Sbjct: 476 SKKFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFNVEKLKKLNPMFEAMDNYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVIEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|282898664|ref|ZP_06306652.1| Glucose-inhibited division protein A subfamily [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196532|gb|EFA71441.1| Glucose-inhibited division protein A subfamily [Cylindrospermopsis
           raciborskii CS-505]
          Length = 648

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/625 (42%), Positives = 368/625 (58%), Gaps = 25/625 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 24  AYDVIVVGAGHAGCEAALAAARLGCPTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 83

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +  V
Sbjct: 84  LGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYAAVMKGIVENQENLTIREAMV 143

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  I  +         C  V+LTTGTFL G I +G   + AGR G+  +  L 
Sbjct: 144 TDLVLGKNDEIIGVETYFGVAFACKAVILTTGTFLGGRIWVGNKSMEAGRAGEFAAVGLT 203

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  +  F+TGRLKTGTPAR+D +++ + K E Q  D  +  FSF     +   QI C +
Sbjct: 204 TTLHRLGFETGRLKTGTPARVDKRSVDYSKMEIQPGDGEVRWFSFDPQVWVEKEQIPCYM 263

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 264 TRTTPETHRLIQENLGLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDI 323

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLEK  ++RP YA+EYDY+   + +P+L TKKI G
Sbjct: 324 PELYIQGFSTGLPETLQILMLRSLPGLEKCVMLRPAYAVEYDYLPATQCYPSLMTKKIEG 383

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGLVAGIN+ + +   + + F R  SYIG +IDDL +K + E
Sbjct: 384 LFCAGQINGTTGYEEAAAQGLVAGINAVQFAQGREMVIFPREQSYIGTLIDDLCTKDLRE 443

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD R+TP+G  +G I +RR          +N      + ++
Sbjct: 444 PYRMLTSRSEYRLLLRSDNADQRMTPLGRAIGLIDDRR----------WNLFTRKQEQII 493

Query: 483 LTSKNLSSTSISFKQD-GKTRTAY------------EFLSYPDFSIQNLFSICPDARKFS 529
              + L ST I   +D G+  T +            + L  P+    +L           
Sbjct: 494 GEKERLHSTRIKEHEDIGRLITQHTQQVIKGSITLADLLRRPEIHYSDLERYGLGNPHLH 553

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
               E  +I+  Y+ Y  RQ  +  +I  +  R +P + DY+S+  LS E +EKL+ +KP
Sbjct: 554 GAEKEGAEIDIKYSGYLARQQNQIDQIARQANRHLPPNLDYNSITTLSKEAREKLTTVKP 613

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             + QAS+I G+ PA +N LL+Y++
Sbjct: 614 LTVGQASRIGGVNPADINALLVYLE 638


>gi|41058565|gb|AAR99265.1| glucose-inhibited division protein A [Candidatus Blochmannia
           schaefferi]
          Length = 602

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/600 (45%), Positives = 376/600 (62%), Gaps = 25/600 (4%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           LITH   T+G MSCNPAIGG+GKGHLV+EIDA+ G+M    D +GIQFR++N  KG AVR
Sbjct: 1   LITHNIDTLGQMSCNPAIGGIGKGHLVKEIDAMGGIMAHAIDRSGIQFRIINNSKGAAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVV 151
             R QAD+ LYR  ++  +   E L ++Q  V      KN +  +++    + +R  +VV
Sbjct: 61  ATRAQADKILYRQMVRNTLEYMECLLIMQASVEDLIIHKNKVCGVIIPKMGIKLRALSVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTII 210
           LTTGTFL G IHIG      GR GD   +SL ++ +K       +LKTGT  R+  K I 
Sbjct: 121 LTTGTFLNGKIHIGFNNFMGGRAGDIGYSSLLSTRLKELSLRVSQLKTGTSPRVHSKGIN 180

Query: 211 WDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +D    Q +D  +  FSFM + +   +QI C IT TN +TH II  N+  S IYSG IK 
Sbjct: 181 FDCLCAQNSDNPVPVFSFMGSVQQHPKQIPCYITHTNNKTHEIIKSNLHRSPIYSGVIKG 240

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
             PRYCPSIEDKI+RF +R+ HQ+FLEPEGL T  +Y NGIST+LP + Q Q I++I GL
Sbjct: 241 VAPRYCPSIEDKIIRFSDRDSHQVFLEPEGLTTPEIYLNGISTSLPFDTQIQIIKSIKGL 300

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E  +IIRPGYA+EYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+
Sbjct: 301 ENAHIIRPGYAVEYDFFDPRDLKLTLESKLISGLFFSGQINGTTGYEEAAAQGLLAGINA 360

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +   +     R  +Y+GV++DDL + G+ EPYRM  SRAEYR+SLR DNAD RLT I
Sbjct: 361 ARFAQNKEGWYPRRDQAYLGVLVDDLCTHGITEPYRMXXSRAEYRLSLREDNADLRLTAI 420

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--------VLTSKNLSSTSISFKQDGKT 501
             KLG I E R + F +  +     R  L++         V+   +L +T +  +  G+ 
Sbjct: 421 ARKLGLIDESRWEFFCRKQENIERERQRLRNTYIFPHSVDVVQLNSLLNTPLKHRISGE- 479

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-----RLQIESSYAAYTGRQMIEAKEI 556
               E L  P+ +   L  +    + FSS +++     +++++  Y  Y  RQ  E +  
Sbjct: 480 ----ELLKRPEINYIQLLQL----QTFSSPILDSQVFCQIELQIKYEGYIRRQQEEIERS 531

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            F E  L+P + D+S +  LS E+ EKL+  KP ++ QAS+I G+TPAA++ LL+++KKN
Sbjct: 532 IFNENVLLPTNMDFSIVSGLSKEVIEKLNDCKPCSVGQASRISGVTPAAISNLLVWLKKN 591


>gi|160946572|ref|ZP_02093775.1| hypothetical protein PEPMIC_00530 [Parvimonas micra ATCC 33270]
 gi|158446956|gb|EDP23951.1| hypothetical protein PEPMIC_00530 [Parvimonas micra ATCC 33270]
          Length = 628

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/621 (43%), Positives = 381/621 (61%), Gaps = 12/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  YDV+VIG GHAGCEA   +A+LG  TA++T    ++  M CNP IGG GKGHLVRE
Sbjct: 5   IDEKYDVVVIGAGHAGCEAGLASARLGLKTAILTISMDSVADMPCNPNIGGTGKGHLVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+++Y   M++ + +++N+D+IQ
Sbjct: 65  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKKMYHTEMKKVLENEKNIDLIQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV    TE N I+ ++   N +     V++ TGT+L+ +I IG+    +G      S  
Sbjct: 125 AEVKEILTENNEITGVLTTSNEIFPAKAVIICTGTYLKSMILIGENCYESGPNNWKCSTY 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S         R KTGTPAR+   +I + K + Q  D+ +IPFSFM +   I N + +
Sbjct: 185 LSDSLRNLGIPLRRFKTGTPARVHRDSIDYSKMDIQKGDDNIIPFSFMNEGKDIGNHKED 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T LET +II +N+  S +Y+G +K  GPRYCPSIEDKIVRF E++ HQ+F+EPEG
Sbjct: 245 CFLTYTTLETKKIIEQNLHRSPMYAGIVKGVGPRYCPSIEDKIVRFNEKDEHQVFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LP E+Q Q  ++I GLE V I+RP Y IEYD I+P  L  TLE K 
Sbjct: 305 LDTSEMYVQGVSSTLPLEVQKQMYKSILGLENVKIMRPAYGIEYDCIDPTILRATLEHKD 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LF AGQING++GYEEAA+QG++AGINSA      +    +R+D+YIGV+IDDL +KG
Sbjct: 365 IKNLFFAGQINGSSGYEEAASQGIIAGINSAMNILGKEPFVLTRSDAYIGVLIDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG-CIGERRQKRFAKYIQEYNFLRSLL 478
             EPYRM TSR EYR+SLR DNAD RLT +   +G    ER +K   K     N +   L
Sbjct: 425 TDEPYRMMTSRTEYRLSLRQDNADLRLTEMSYNIGLATKERYEKCLNKKTLIENEIER-L 483

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           KS +LT K  ++ ++      K +TA   Y+ +  P+   + +  +          +  +
Sbjct: 484 KSSILTPKENTNNALEALGSMKLKTAVSLYDLIKRPELDYEIIKDLDTTREPLDREIKMQ 543

Query: 536 LQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +Q    Y  Y  +  Q IEA + K E K+L  ++ DY+SL  L  E  +KL+  +P  + 
Sbjct: 544 VQTMIKYEGYIEKQSQQIEAFK-KLENKKL--ENIDYNSLSGLRIEAVQKLAKFRPETVG 600

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G++PA +N+LLI+++
Sbjct: 601 QASRISGVSPADINVLLIHLE 621


>gi|83591334|ref|YP_431343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moorella thermoacetica ATCC 39073]
 gi|123725614|sp|Q2RFI9|MNMG_MOOTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83574248|gb|ABC20800.1| glucose inhibited division protein A [Moorella thermoacetica ATCC
           39073]
          Length = 630

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 379/618 (61%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AAKLG  T ++T    +I  M CNP+IGG  KGHLVREIDA
Sbjct: 6   NYDVIVIGAGHAGCEAALAAAKLGCRTLMLTISLESIAMMPCNPSIGGPAKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG   D + IQ R LN  KGPAVR  R QAD++LY+  M   +  QE+LDV Q EV
Sbjct: 66  LGGIMGLNIDRSRIQIRRLNSGKGPAVRALRAQADKKLYQREMTLTLERQEHLDVKQAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +  ++ +  +   C  +VLTTGT+LRG I IG++    G  G  P+  L  
Sbjct: 126 IRILTESGRVKGVLTRTGAYFACRAIVLTTGTYLRGRIIIGEVAYAGGPNGQFPAIELAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTP R+ G++I WDK  +Q  D   + FSF  +      + C +T 
Sbjct: 186 SLKELGLRMGRFKTGTPPRVSGRSINWDKMTEQPGDPGPLRFSFWEEGPERPNVSCWLTH 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++ GHQIFLEPEG+ T+ 
Sbjct: 246 TNTTTHNIIKDNLHRAPLFSGLIEGKGPRYCPSIEDKVVRFADKPGHQIFLEPEGMGTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   + ++PGLE+  ++RPGYAIEYDYI+P +L  +LE K I+GLF
Sbjct: 306 WYVQGLSTSLPEDVQLAVLHSVPGLEQAEMMRPGYAIEYDYIDPTQLKASLECKHIAGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAGIN+AR   + + +   R  +YIGV+IDDL ++GV EPY
Sbjct: 366 TAGQINGTSGYEEAAAQGLVAGINAARLVREQEPLILRRDQAYIGVLIDDLVTRGVTEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL  IG ++G + E+R ++     +  N     L    + 
Sbjct: 426 RLLTSRAEHRLLLREDNADLRLGRIGYEIGLLDEQRFRKLEAKEKAINDGLVYLGKQHVG 485

Query: 485 SKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFS--ICPDARKFSSLVIERLQI 538
             N     I           T +  + +  P    Q+L +  + P+       +   +++
Sbjct: 486 GNNPKIQEIIVACGEPPLKGTTSLKDLMRRPRIKYQDLAAAGLVPE---LPPEIAAEIEM 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  ++ I+ + +   E R++P D +YS +  LS E  + L  +KP +L QA +I
Sbjct: 543 MVKYEGYIAKEKIQVERLAKLEARVLPADLNYSEIRGLSRESIDHLERVKPRSLGQALRI 602

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+TPA +++LL+Y+++ 
Sbjct: 603 PGVTPADISVLLVYLEQK 620


>gi|149278193|ref|ZP_01884331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter sp. BAL39]
 gi|149230959|gb|EDM36340.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter sp. BAL39]
          Length = 620

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/623 (44%), Positives = 382/623 (61%), Gaps = 16/623 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   KEYDVIVVGAGHAGCEAAAAAANLGSSVLLITMNMETIAQMSCNPAMGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDV 119
           A+ G  G ++D   +QFR+LN+ KGPA+  PR Q DR    E +RLA++R      N+D 
Sbjct: 63  AMGGYSGIISDKTTLQFRMLNLSKGPAMWSPRAQNDRKRFAEEWRLALER----TPNVDF 118

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V+    + N ++ +       I   +VVLT GTFL G+IHIG+ K   GR  +  +
Sbjct: 119 WQDMVSSLVIKNNTVTGVKTSLGIEISGKSVVLTNGTFLNGLIHIGEKKFGGGRTAERAA 178

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             +        F+ GR+KTGTP R+DG+++ +   E+Q+ DE    FS+        Q  
Sbjct: 179 TGITEQLTTLGFEAGRMKTGTPPRVDGRSLNYSLMEEQWGDENPGRFSYTNVARPTEQRC 238

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG
Sbjct: 239 CWITYTNADVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEG 298

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q++ +  IPG E   + RPGYAIEYDY  P +L  TLETK 
Sbjct: 299 WNTCEIYVNGFSTSLPEDVQYRALTQIPGFENAKMFRPGYAIEYDYFPPTQLGLTLETKL 358

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQINGTTGYEEAA+QG +AGIN+ +K N L  +   R++SYIGV+IDDL +KG
Sbjct: 359 INNLFFAGQINGTTGYEEAASQGFIAGINAHQKVNDLHELIMKRSESYIGVLIDDLVTKG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RL+PIG +LG I + R     + I   + + +  K
Sbjct: 419 TEEPYRMFTSRAEHRLLLRQDNADIRLSPIGHQLGLISDERLDLVKQKISNSDAIVTFSK 478

Query: 480 --SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLVI 533
              + ++  N     +      +       L  P  +I +L ++         +F    I
Sbjct: 479 KQGIDMSEANDKLAELGTTALNQNVKIVSLLGRPQVNINDLRTMSKPFDHYLEQFDQETI 538

Query: 534 ERLQIESSYAAYTGR-QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           E+ +I+  Y +Y  + Q I  K  K E+K + P DFDYS L +LS E +EKL  +KP  L
Sbjct: 539 EQAEIKIKYESYFEKEQEIVNKMQKMEDKDINP-DFDYSQLVSLSKEAREKLLKIKPRTL 597

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++L+++I K
Sbjct: 598 GQASRISGVSPSDISVLMVHISK 620


>gi|229551113|ref|ZP_04439838.1| glucose-inhibited division protein A [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315505|gb|EEN81478.1| glucose-inhibited division protein A [Lactobacillus rhamnosus
           LMS2-1]
          Length = 639

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 17  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 77  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 136

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 137 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 196

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 197 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 257 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 317 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVRN 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 377 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 437 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 496

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 497 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLAQFLPETPTLDHRVIEQVEI 554

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   DY ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 555 QIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPETIAQASRI 614

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 615 SGVNPADVAILSVYIEQGRI 634


>gi|193211683|ref|YP_001997636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobaculum parvum NCIB 8327]
 gi|193085160|gb|ACF10436.1| glucose inhibited division protein A [Chlorobaculum parvum NCIB
           8327]
          Length = 621

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/625 (42%), Positives = 370/625 (59%), Gaps = 20/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAALAVARSGLECLLITSDLSAVARMSCNPAIGGVAKGQMTREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KG A+  PR QAD+ LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRLLNRSKGAALHSPRAQADKTLYSLYMRSVIEHEPNIDILQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G +  K    S+ +     I+    +L  GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GVSAPKGTFKSVTVMSGRAIKAKAAILACGTFLNGLIHIGMDHYPGGRSVAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +D   +Q  D+  + FSF T+ + +R  + C +T
Sbjct: 182 SLAALGFSFGRLKTGTPPRIDSRSVNYDLVTEQPGDDDPVAFSFSTESVAHRNLVCCHLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF E+    IFLEPEG +T 
Sbjct: 242 KTTEKTHEILRSGFDRSPLFTGKVQGVGPRYCPSIEDKIYRFPEKLSQHIFLEPEGADTI 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYDY +P ++  T+ET+ +  L
Sbjct: 302 EMYVNGFSTSLPEDIQLAGLRSIPGLEEAKMIRPGYAIEYDYFHPWQIRSTMETRPVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAGQGLMAGINAVRKILGKEPIVLGRDQAYIGVLIDDLITKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL+ +G + G + E + ++              LKSL L
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLSTVGYECGLVSEHQLEKTKAITDLAGECIERLKSLKL 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLF-----------SICPDARKFSS 530
               ++    +   ++     +A   L  P   + +L              C D R    
Sbjct: 482 KPDEINQLLANKGAQELKSPASALSVLKRPGIELADLLRHSAAVQAAIGETCEDVR---- 537

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E++QIE  Y  Y  R+ + A+ I   +   IP +F Y SL +LSNE +EKL   +P 
Sbjct: 538 -VAEQVQIEIKYEGYIKREKLVAERIARLDALHIPDNFKYESLNSLSNEGREKLIKHRPS 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +++L+I + +
Sbjct: 597 TIGQASRILGVSPSDVSILMIRLGR 621


>gi|258541096|ref|YP_003175595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus Lc 705]
 gi|257152772|emb|CAR91744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG/GidA [Lactobacillus rhamnosus Lc 705]
          Length = 633

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVRN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLAQFLPETPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   DY ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|261878875|ref|ZP_06005302.1| glucose-inhibited division protein A [Prevotella bergensis DSM
           17361]
 gi|270334515|gb|EFA45301.1| glucose-inhibited division protein A [Prevotella bergensis DSM
           17361]
          Length = 624

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/626 (42%), Positives = 377/626 (60%), Gaps = 13/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIVIGGGHAGCEAA  AA LGA T L+T   + I  MSCNPA+GG+ KG LVR
Sbjct: 1   MKDFNYDVIVIGGGHAGCEAATAAANLGAKTCLVTMDMNKIAQMSCNPAVGGIAKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+V DA  IQFR+LN  KGPAV  PR Q DRE Y +  +R +    NLD+ 
Sbjct: 61  EIDALGGFMGKVTDATAIQFRMLNKGKGPAVWSPRAQCDREKYIVEWRRVLDRTPNLDIW 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +     T       +       IR   VV+T GTFL G++HIG+ + P GR  +    
Sbjct: 121 QDQADELLTVHGEAVGVRTVWGVEIRAKAVVVTAGTFLNGLMHIGRKQYPGGRCAEPAVL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
               S  ++    GR+KTGTP RLD ++I ++ TE+Q  +     FS++  + T +Q+ C
Sbjct: 181 HFTESITRWGVRAGRMKTGTPVRLDKRSIHFEDTEEQPGENDFHKFSYLWSQPTLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN + H I+ E+I +S +Y+G I+S GPRYCPSIE K+V F +R+ H +F+EPEG 
Sbjct: 241 WTCSTNSDAHEILREDIANSPLYNGQIESIGPRYCPSIETKLVTFPDRDSHPLFIEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y NG S+++P E Q + +  IP L +  I RPGYAIEYDY +P +L  +LE+K I
Sbjct: 301 DTNEMYLNGFSSSMPLETQLKALHQIPALREAKIYRPGYAIEYDYFDPTQLKHSLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF+AGQ+NGTTGYEEA AQG+VAG+N+A   +  +     R +SYIGV+IDDLT+KGV
Sbjct: 361 KGLFMAGQVNGTTGYEEAGAQGIVAGVNAALHCSGNEPFVMRRDESYIGVLIDDLTTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +  + +    K+
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADARLTEKAYELGLASRERLDWWLEKKEAIDRMIQYCKN 480

Query: 481 LVLTSKNLSST----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-------DARKFS 529
             +  K ++S+     I   + G   T  + +  P  +++ L  I P         R  +
Sbjct: 481 TSVKPKEINSSLEALGIPPLRMGCKLT--DLIGRPQLNMKVLAEIIPGLKEQMESPRNRA 538

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             ++E ++I   Y  Y  R+ + A ++   E   I   F+Y  L  +S E ++KL  + P
Sbjct: 539 EEIVEGVEIRIKYRGYIEREKLIADKMHRLENIRIKGKFNYQDLKEISTEGRQKLERIDP 598

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++P+ +N+LL+ + +
Sbjct: 599 ETLGQASRIPGVSPSDINVLLVLMGR 624


>gi|227893843|ref|ZP_04011648.1| glucose-inhibited division protein A [Lactobacillus ultunensis DSM
           16047]
 gi|227864332|gb|EEJ71753.1| glucose-inhibited division protein A [Lactobacillus ultunensis DSM
           16047]
          Length = 632

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/614 (43%), Positives = 360/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FSF +        QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSFESRDADYLKHQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + +++G IK  GPRYCPSIEDK+VRF ++N HQIFLEPEG  T 
Sbjct: 250 YTNPVTHEIIRNNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKNRHQIFLEPEGKTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD I P +L  TLETKK+  L
Sbjct: 310 EVYVGDFSTSMPEEVQLKMVHSVAGLEHAELMRPGYAIEYDVIEPWQLKHTLETKKLKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R KRF +  Q     +  L  + V
Sbjct: 430 YRLLTSRAEYRLILRTDNADLRLTEYGHQLGLISDERYKRFEEKKQAIRDAKERLHGITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S  Q+       A  FL  P+ +I ++  +  +  K    V E+++I  
Sbjct: 490 HLTDEVQEFLKSIGQEPMKAGVKADVFLRRPNVTIDDIERLTGEKIKGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|227543713|ref|ZP_03973762.1| glucose-inhibited division protein A [Lactobacillus reuteri
           CF48-3A]
 gi|300908778|ref|ZP_07126241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri SD2112]
 gi|227186281|gb|EEI66352.1| glucose-inhibited division protein A [Lactobacillus reuteri
           CF48-3A]
 gi|300894185|gb|EFK87543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri SD2112]
          Length = 647

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/625 (42%), Positives = 372/625 (59%), Gaps = 15/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  A ++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAATRMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  DE    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + +   +R AK  ++   + + +K 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSD---ERLAKMEEKKRQVAAEIKR 495

Query: 481 LVLTSKNLSSTSIS--FKQDGKTR-----TAYEFLSYPDFSIQNLFSICP-DARKFSSLV 532
           L       S   ++   +  G  R      A + L  P F  Q L    P   ++    V
Sbjct: 496 LEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTLAEFIPAPEQELDRHV 555

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L
Sbjct: 556 IEQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETL 615

Query: 593 LQASKIEGMTPAALNLLLIYIKKNT 617
            QAS+I G+ PA + +L +Y+++ T
Sbjct: 616 AQASRISGVNPADIAILSVYVRQGT 640


>gi|50365486|ref|YP_053911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesoplasma florum L1]
 gi|81170555|sp|Q6F0E6|MNMG_MESFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50364042|gb|AAT76027.1| glucose inhibited division protein A [Mesoplasma florum L1]
          Length = 626

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/624 (41%), Positives = 380/624 (60%), Gaps = 13/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ +DVIVIGGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MNKHFDVIVIGGGHAGVEAALASARLNKKTALINLYKDRIAAMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + AD   +Q ++LN  +GP V   R Q+D+E Y   MQ+ +  Q NL +I+
Sbjct: 61  IDALGGEMAKAADKTALQTKLLNSSRGPGVWALRVQSDKEEYSKYMQKIVEEQINLQLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E N ++ ++++D  +++   VVLTTGT+L+  I  G  K  +G   +  SN 
Sbjct: 121 SIATDLIIENNTVTGVLLKDGEILKSKCVVLTTGTYLKSEILTGHEKFSSGPNEEPTSNG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           +  S  K   +  R KTGTP R+   ++   K  K+   +  + FSF T++ T   +Q  
Sbjct: 181 ISESLKKSGVELFRFKTGTPPRIYKNSVDLSKAIKEPGTDAKLAFSFSTNEYTPIEKQEL 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  ++ ET +II +N+  SA+YSG ++S GPRYCPS EDKIVRF  +  HQIF+EPE 
Sbjct: 241 CYLIHSSSETKKIIEDNLTKSAMYSGKVESIGPRYCPSFEDKIVRFSSKETHQIFIEPES 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++ D  Y  G ST++P ++Q   IR++PG EK  +    YAIEYD +NP +L P+LE K 
Sbjct: 301 ISGDAWYIQGFSTSMPTDVQLLMIRSLPGFEKAEVKTWAYAIEYDCVNPMQLNPSLEIKN 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQINGT+GYEEAA QGL+AGIN++RK + LD +   R ++YIGVMIDDL +KG
Sbjct: 361 INNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPLILRRDEAYIGVMIDDLINKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAE+R+ LR DNA++RL   G ++G I +     + KY +E N     L+
Sbjct: 421 VWEPYRLLTSRAEHRLLLRNDNAEHRLKEKGYEIGLIKQAEYNEYLKYTEEINNAIKELE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            +  T K  S  +I  K+ G+   ++     E L  P   I+ +       +   +  ++
Sbjct: 481 EIRFTPK--SELAIKLKELGQADLSHGYSGIEILKIPTVDIEVMIPYISSLQNLKNNQLQ 538

Query: 535 RLQIESSYAAY--TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            + IE+ +A Y  T R+ +E + +K E+K+ IP D DY  +  L+ E ++KL  +KP N+
Sbjct: 539 SIVIETRFAGYVKTERKTVE-RLVKLEKKK-IPSDIDYDKVENLATEARQKLKKVKPLNI 596

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
            QAS+I G+ PA + +LL Y+K N
Sbjct: 597 GQASRITGVNPADIQMLLFYLKNN 620


>gi|227511144|ref|ZP_03941193.1| glucose-inhibited division protein A [Lactobacillus buchneri ATCC
           11577]
 gi|227523331|ref|ZP_03953380.1| glucose-inhibited division protein A [Lactobacillus hilgardii ATCC
           8290]
 gi|227085626|gb|EEI20938.1| glucose-inhibited division protein A [Lactobacillus buchneri ATCC
           11577]
 gi|227089522|gb|EEI24834.1| glucose-inhibited division protein A [Lactobacillus hilgardii ATCC
           8290]
          Length = 645

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/626 (41%), Positives = 376/626 (60%), Gaps = 14/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+G GHAGCEAA  AA++G  T ++T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  KNYDVIVVGAGHAGCEAALAAARMGNKTLVLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAV+  R QAD+  Y   M+  + ++ NL + Q  
Sbjct: 76  ALGGEMGRNIDKTYVQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTMENEPNLTLRQAI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAKYFAKSVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDK---ITNRQIE 239
            S  +  FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF  +DK       Q+ 
Sbjct: 196 GSLEELGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDKDYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q Q + TI GLE   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQQMLHTISGLENAEMMRPGYAIEYDVVAPYQLKPTLETKI 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QG++AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGIIAGINAGRRALGQGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS--- 476
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I +   +R+A+++ +   + S   
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISD---ERYAQFLSKKKAIESEID 492

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARK-FSSLV 532
            L S+ +   ++ +  +    D   +    A  FL  P    Q L     D  +     V
Sbjct: 493 RLNSIRIKPSDVVNKFVEAHGDKPLKDGVIASVFLRRPYVDYQTLLQFISDPEQHLDRHV 552

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  +
Sbjct: 553 IEQVEIQTKYAGYIAKAESSVEKMKRMEAKKIPNRIDYEAIDGIATEARQKLQKIHPETI 612

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            QAS+I G+ PA + +L +YI++  +
Sbjct: 613 AQASRISGVNPADIAILSVYIQQGKI 638


>gi|317504353|ref|ZP_07962339.1| glucose inhibited division protein A [Prevotella salivae DSM 15606]
 gi|315664544|gb|EFV04225.1| glucose inhibited division protein A [Prevotella salivae DSM 15606]
          Length = 623

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/623 (41%), Positives = 372/623 (59%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  +A++GA T LIT   + +G MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVIGGGHAGCEAAVASARMGAKTCLITMDMNKVGQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGRV D   IQFR+LN+ KGPAV  PR Q DR  +    +  + + +NLD+ Q EV
Sbjct: 64  LGGQMGRVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDNTDNLDIWQDEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +    +    +      ++V+T GTFL G++HIG   I  GR  +   +    
Sbjct: 124 NELIVQNHEAIGVKTIWDVEFYAKSIVVTAGTFLNGLMHIGHKMIEGGRCAEPAVHHFTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  ++   + R+KTGTP R+D +++ ++  E+Q  D     FS++ +  T RQ+ C  T 
Sbjct: 184 SITRWGITSSRMKTGTPVRIDKRSVDFNAMEEQQGDHDFHQFSYLNEHRTLRQLPCWTTY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   H  + + +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG NT+ 
Sbjct: 244 TNAAVHEELQKGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHQHPLFLEPEGENTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P ++Q   +  IP L +  I RPGYAIEYDY +P +L  +LE+K +SGLF
Sbjct: 304 MYLNGFSSSMPMDVQLAALHKIPALREAKIYRPGYAIEYDYFDPTQLKHSLESKILSGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R  SYIGV+IDDLT+KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGIVAGINAALKCSGSEPFVMQRDQSYIGVLIDDLTTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +    L    K   + 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTEKAYELGIATRERYDWWLQKKEAVQRLIDFCKDFPIK 483

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSL-------V 532
           ++ ++S     +  G T         + ++ P  ++QNL  I P  ++  +L       +
Sbjct: 484 AQEINS---ELEALGTTPLRAGCKLSDLIARPHLTLQNLSEIIPALKEAINLSENRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A ++   E   I   F YS L  +S E ++KL  + P  L
Sbjct: 541 AEAAEIQLKYQGYIEREKLIADKMHRLENIKIKGRFKYSELHEISTEGRQKLEKINPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLLGR 623


>gi|295398146|ref|ZP_06808195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus viridans ATCC 11563]
 gi|294973665|gb|EFG49443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus viridans ATCC 11563]
          Length = 633

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/623 (42%), Positives = 378/623 (60%), Gaps = 12/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++GA T LIT     +  M CNP+IGG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGSEAALAAARMGAETMLITINIDMVAFMPCNPSIGGPAKGVVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD++ Y   M++ I +Q++L + QG V 
Sbjct: 70  GGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKDEYAKEMRKTIENQDHLTLRQGLVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF-N 184
               E + +  I+    ++ R   V+LTTGT  RG I IG+LK  +G     P+  L  N
Sbjct: 130 DLIIEDDTVKGIITNTGAIYRADAVILTTGTAARGEIIIGELKYSSGPNNSQPAEKLTRN 189

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIEC 240
              K+ FD  R KTGTP R+D +TI +D TE Q  D+    FSFM+          Q+ C
Sbjct: 190 MAEKYGFDIARFKTGTPPRVDKRTINYDATEIQPGDDAPNHFSFMSKDADYLPLVDQVPC 249

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEGL
Sbjct: 250 FLTYTNEATHETIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPKHQIFLEPEGL 309

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + + +Y  G+ST+LPE++Q+  I ++ GLE   I+R GYAIEYD + P +L   LETK++
Sbjct: 310 DNEEIYVQGLSTSLPEDVQNDMIHSVKGLENARIMRNGYAIEYDVVKPNQLKVNLETKQV 369

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + LF AGQ NGT+GYEEAA QGL AGIN+  K    +     R   YIGVMIDDL +KG 
Sbjct: 370 ANLFTAGQTNGTSGYEEAAGQGLYAGINAVLKIRGEEPFVIGRDQGYIGVMIDDLVTKGT 429

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRS 476
            EPYR+ TSRAEYR+ LR DNAD RLT  G + G + E +   +    A+  +E + L +
Sbjct: 430 TEPYRLLTSRAEYRLLLRHDNADTRLTEKGYEFGLVSEEQYNLYKSNQAEVAEELDRLAN 489

Query: 477 L-LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           + LK        L+  + +  +DG    A + L  P+  I ++    P  +  S  V+E+
Sbjct: 490 VRLKPTQELQDYLAEKNSAALKDGI--MASDLLRRPELKIDDILKFAPSDKDLSRQVLEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  + +++   E++ IP D D+ ++ +L+ E +++L  + P  L QA
Sbjct: 548 VEIQIKYAGYIVKEQRKVEKLHRLEQKEIPADIDWDAIDSLATEARQRLKEIGPRTLAQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S++ G+ PA ++++++Y++   V
Sbjct: 608 SRVSGVNPADVSIIMVYLQGGHV 630


>gi|268610511|ref|ZP_06144238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus flavefaciens FD-1]
          Length = 629

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/632 (43%), Positives = 386/632 (61%), Gaps = 28/632 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV V+G GHAG EAA  AA+LG  T + T     I +M CNP+IGG  KGHLVREIDAL
Sbjct: 8   FDVAVVGAGHAGVEAALAAARLGCRTVMFTISLDQIANMPCNPSIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD   IQ R+LN  KGPAV   R QADR  Y   M+     QENL V Q +VA
Sbjct: 68  GGEMGKGADECFIQSRMLNRGKGPAVHSLRVQADRVKYHNYMKNVCEKQENLYVKQADVA 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I  +            V++ TGT+L+G IHIG++   +G     PS  L +S
Sbjct: 128 EVICENGKIIGVRTSLGVEYSVKAVIIATGTYLKGKIHIGEVSYESGPDSALPSVRLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                 +  R KTGTP R++ ++I +D  E+Q  D++++PFSF T  D + N Q+ C +T
Sbjct: 188 LRAAGVELRRFKTGTPCRVNKRSIDFDVMERQDGDDKIVPFSFETPVDGLEN-QVSCYVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I+ N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+T+
Sbjct: 247 YTNSNTHEVILSNLDRSPLYSGRIEGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLSTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q  F+RTI GLE V I+RP YAIEYD  +P +L PTLE KKI GL
Sbjct: 307 EYYLQGMSSSLPEDVQLAFLRTITGLEHVEIMRPAYAIEYDCCDPLQLLPTLEFKKIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NG++GYEEAAAQG+VAGIN+A K    + +   R  SYIG ++DDL +KG  +P
Sbjct: 367 YGAGQFNGSSGYEEAAAQGIVAGINAALKIKGEEPMILDRASSYIGTLVDDLVTKGCSDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTPIG K+G I + R ++    I+  +     +KS  +
Sbjct: 427 YRMMTSRSEYRLILRQDNADQRLTPIGHKIGLISDERYRKLLSKIKLVDDEIKRVKSTNI 486

Query: 484 TSKN-----LSSTSISFKQDG--------KTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
           +  +     L S   S    G        + +  YE L+  D S + L    PD      
Sbjct: 487 SPNSELNAFLESIGTSAMTTGCKLADLIRRPQVKYEDLAKYDVSRETL----PDD----- 537

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E+++++  Y  Y  +Q+ +  +++  E + +PK+ DYS +  L  E  EKL+ ++P 
Sbjct: 538 -VCEQVELQIKYEGYISKQLEQIDQVRKLEDKKLPKNTDYSQIRGLRLEAAEKLNKIQPL 596

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++ QAS+I G++PA +++L++++  +T+K  E
Sbjct: 597 SIGQASRISGVSPADVSMLVVWL--HTMKEGE 626


>gi|229824622|ref|ZP_04450691.1| hypothetical protein GCWU000282_01969 [Catonella morbi ATCC 51271]
 gi|229785993|gb|EEP22107.1| hypothetical protein GCWU000282_01969 [Catonella morbi ATCC 51271]
          Length = 638

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/623 (41%), Positives = 381/623 (61%), Gaps = 13/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YEVIVVGAGHAGSEAALSAARMGCRTLLLTISLEMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y  AM++ I +  NLD+ QG V 
Sbjct: 69  GGEMGRNIDKTYIQMRMLNTGKGPAVQALRAQADKHAYATAMKQTIEACPNLDLKQGLVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  +  +V    +      VVLT GT  RG I IG+LK  +G     PS  L   
Sbjct: 129 RLVVEEGQVRGVVTSTGARYSADAVVLTAGTSSRGQIIIGELKYSSGPNNTLPSQKLSEH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGIT 243
            ++  F+  R KTGTP R+   +I ++  E Q  D +   FSF+T     R   + C +T
Sbjct: 189 LLELGFELARFKTGTPMRIHKSSINYEAMEIQPGDSQPNHFSFLTPDADYRPDFVPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ +TH +I  N+  + +++G ++  G RYCPSIEDKIVRF ++  HQIF+EPEGL TD
Sbjct: 249 HTSQDTHEVIKANLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFVEPEGLTTD 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST++PE++Q + + ++ GLE   ++RPGYAIEYD + P +L  +LETK + GL
Sbjct: 309 EMYIQGLSTSMPEDVQLEMLHSVAGLENAKLMRPGYAIEYDVVIPHQLRASLETKLVRGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ+NGT+GYEEAA QGL+AGIN+AR+    D +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQMNGTSGYEEAAGQGLIAGINAARQVQGKDPLIIKRSDGYIGVMIDDLVTKGTTEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--AKYIQEYNFLRSLLKSL 481
           YR+ TSRAEYR+ LR DNAD RLT IG ++G + ++R + +   K + +    R  LK +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEIGHQIGLVDDQRYETYLAKKALVDAEIKR--LKKI 486

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER 535
            LT K      + F++ G +      +A+  L  P+    +L ++ P           E+
Sbjct: 487 TLTPKTPGLEEL-FERVGSSSLLDGISAFNLLKRPEIRYLDLVTLIPRPEGPLERQEAEQ 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + + + +++K  E++ IP+D DY ++  L+NE +++L +++P  L QA
Sbjct: 546 VEIQIKYEGYIQKAIEKVEKVKAMEEKRIPEDIDYDAILNLANEARDRLKLIQPTTLAQA 605

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S++ G+ PA + +L +YI++  +
Sbjct: 606 SRVSGVNPADIAILSVYIQQGKI 628


>gi|331002966|ref|ZP_08326478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413010|gb|EGG92385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 628

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/623 (42%), Positives = 378/623 (60%), Gaps = 9/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA V A+LG  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 7   YDIVVVGAGHAGCEAALVGARLGLKTVIFTVSVDSIALMPCNPNIGGSSKGHLVKELDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + Q E+ 
Sbjct: 67  GGEMGKCIDKTFIQSKMLNASKGPAVHSLRAQADKQEYSKEMRKTLENTPNLSICQKEIT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E NI   +     S      V+L TGT+L      G++    G  G   +N L +S
Sbjct: 127 KLIIEDNICKGVETISGSKYYAKAVILATGTYLNARCIYGEVAEYTGPNGLKSANHLTSS 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
            +++  D  R KTGTPAR+DG+TI ++  E+Q+ D  ++PFSF TD   I   Q++C + 
Sbjct: 187 LIEYGIDLNRFKTGTPARVDGRTINYEVMEEQYGDNPVVPFSFETDPESIQKEQVKCYLA 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ +TH II +NI  S ++SG IK  GPRYCPSIEDK+V+F +++ HQIF+EPEG  T+
Sbjct: 247 YTSEKTHEIIRKNIDRSPLFSGAIKGTGPRYCPSIEDKVVKFPDKDRHQIFVEPEGFYTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y +G+S++LPE++Q + IR+I G E V I+R GYAIEYD I+ ++L  +LE + I GL
Sbjct: 307 EMYLSGLSSSLPEDVQDEMIRSIEGFENVEIVRNGYAIEYDCIDARQLKDSLEFRAIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NG++GYEEAA QGL+AGIN++ K    D +   R   YIGV+IDDL +K   EP
Sbjct: 367 FAAGQFNGSSGYEEAAVQGLMAGINASMKILGRDPVVIGRDQGYIGVLIDDLVTKESHEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLT +G  +G I E R +R  +  ++     + LK++ +
Sbjct: 427 YRMMTSRSEYRLLLRQDNADIRLTKLGYDIGLISEERYQRLLEKEKQIEEEINRLKNIHI 486

Query: 484 TSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            + NL       K +G T         E +  P+ +      I  + ++    V +++ I
Sbjct: 487 GA-NLKVQEFLVK-NGSTPLQTSANLAEVIRRPELNYDLTKEIDDNRKELRKEVRDQVNI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ  + K+ K  E + IP D DYS + +L  E  +KLS +KP ++ QAS+I
Sbjct: 545 NIKYEGYIKRQESQVKQFKKLENKKIPADIDYSKVNSLRIEAVQKLSKVKPSSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G++PA + +LL+Y++    K N
Sbjct: 605 SGVSPADITVLLVYLETYKEKKN 627


>gi|116496319|ref|YP_808053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei ATCC 334]
 gi|122262284|sp|Q033L1|MNMG_LACC3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116106469|gb|ABJ71611.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
          Length = 633

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/620 (43%), Positives = 373/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RL P+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLKPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|298207256|ref|YP_003715435.1| glucose-inhibited division protein A [Croceibacter atlanticus
           HTCC2559]
 gi|83849892|gb|EAP87760.1| glucose-inhibited division protein A [Croceibacter atlanticus
           HTCC2559]
          Length = 623

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 276/636 (43%), Positives = 388/636 (61%), Gaps = 38/636 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA +G ST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFESEYDVIVVGAGHAGSEAAAAAANMGCSTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    + ++    NLD  
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLKLEQTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   EK+ +  +       +R  TVVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 121 QEMVAGLIVEKDKLVGVRTSLGLEVRGKTVVLTNGTFLNGLIHIGEKQFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            +    +   F++GR+KTGTP R+DG+++ + K  +Q  D+  IP+ F    IT    +Q
Sbjct: 181 GITADLLNLGFESGRMKTGTPPRVDGRSLDYSKMTEQPGDD--IPWKFSYSDITKPLEKQ 238

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C +T T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EP
Sbjct: 239 RSCYMTYTSPEVHDLLREGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQMFIEP 298

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT  VY NG ST+LPE++Q + +R++ G EKV   RPGYAIEYDY  P +L  TLET
Sbjct: 299 EGWNTVEVYVNGFSTSLPEDVQFKALRSVVGFEKVKFFRPGYAIEYDYFPPTQLKHTLET 358

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLF AGQINGTTGYEEAA+QGL+AG+N+A K  + D     R ++YIGV+IDDL +
Sbjct: 359 KLVDGLFFAGQINGTTGYEEAASQGLIAGVNAALKVKEQDEFILKRDEAYIGVLIDDLIT 418

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRMFTSRAEYR  LR DNAD RLT    ++G   E   +R+ K + + +   S 
Sbjct: 419 KGTEEPYRMFTSRAEYRTLLRQDNADFRLTGKSFEIGLASE---ERYNKMLDKKDKSESF 475

Query: 478 LKSLVLTSKNL--------SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           +     TS +          + S + KQ+ K    ++  S P  ++        D R+F+
Sbjct: 476 VDFFKNTSYDWKEANEILKENNSATVKQNDKL---FKLFSRPQITMD-------DVRQFN 525

Query: 530 SL------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
            +            V+E+ +++  YA Y  ++   A +++  E   IP DFDYS L ++S
Sbjct: 526 DVENYIQEHNLDTEVLEQTEVQVKYAGYIEKEKNNADKLQRLEYVKIPSDFDYSQLKSMS 585

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            E +EKL  ++P  + QAS++ G+ PA +++LL+Y+
Sbjct: 586 YEAREKLQEIQPRTVSQASRVSGVNPADISVLLVYL 621


>gi|302388591|ref|YP_003824413.1| glucose inhibited division protein A [Clostridium saccharolyticum
           WM1]
 gi|302199219|gb|ADL06790.1| glucose inhibited division protein A [Clostridium saccharolyticum
           WM1]
          Length = 633

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/618 (41%), Positives = 377/618 (61%), Gaps = 11/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 8   YDVVIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVRELDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R QAD++ Y  AM+  + + ++L + Q EV+
Sbjct: 68  GGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKQEYSRAMRMTLENTDHLTIRQAEVS 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +     ++  C   VL TGT+L+     G +    G  G   +N L +S
Sbjct: 128 EIIVEDGTLTGVKTISGAVYHCKAAVLATGTYLKARCIYGDVSEYTGPNGLKAANHLTDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +   +  R KTGTPAR+D ++I + + E+QF DE+++PFSF TD+  +   Q+ C +T
Sbjct: 188 LKEHGIEMLRFKTGTPARVDKRSIDFSRMEEQFGDEKVVPFSFSTDRKALQKDQVSCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II ENI  S +YSG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEGL T+
Sbjct: 248 YTNENTHQIIRENIDRSPLYSGAIEGTGPRYCPSIEDKVVKFSDKERHQVFVEPEGLFTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q+   RT+PGLE V I+R  YAIEYD IN ++L  TLE   I GL
Sbjct: 308 EMYLAGMSSSLPEDVQYAMYRTVPGLENVRIVRNAYAIEYDCINSRQLKSTLELMSIRGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAA QG +AG+N+A K    + +   R+ +YIGV+IDDL +K   EP
Sbjct: 368 FCGGQFNGSSGYEEAAVQGFMAGVNAAMKLLGREQVVLDRSQAYIGVLIDDLVTKENHEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RL  IG  +G I     +++ K +++   +   ++ L  
Sbjct: 428 YRMMTSRAEYRLLLRQDNADLRLMKIGHDIGLIS---HEQYEKLLEKERLIEEEIRRLES 484

Query: 484 TSKNLSSTSISF-KQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           T+   S    +F +++G T      T  E +  P+     L +I          VIE++ 
Sbjct: 485 TNIGASREVQAFLEENGSTPLKTGTTLAELVRRPELDYIMLTNIDNQRPLLPEDVIEQVN 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  +  + K  E + +  +FDYSS+  L  E  +KL++ KP ++ QAS+
Sbjct: 545 INIKYDGYIRRQKQQVIQYKKLENKRLDVEFDYSSVKGLRREAIQKLNLYKPMSIGQASR 604

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LL+++++
Sbjct: 605 ISGVSPADISVLLVFLEQ 622


>gi|332653662|ref|ZP_08419406.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcaceae bacterium D16]
 gi|332516748|gb|EGJ46353.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcaceae bacterium D16]
          Length = 627

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/616 (42%), Positives = 366/616 (59%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ VIG GHAG EAA  AA++G  T   T     +G+M CNPAIGG GKGHLVRE+DA
Sbjct: 8   QYDIAVIGAGHAGIEAALAAARMGLRTVCFTINLDAVGNMPCNPAIGGTGKGHLVRELDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR AD A IQ+R+LN  KGPAV   R QADR  Y+  M+  +  QENL V Q EV
Sbjct: 68  LGGEMGRAADKACIQYRILNRGKGPAVWSLRAQADRREYQKIMKHTLERQENLWVKQAEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S++V    ++      ++ TGT+L G   +G++   +G  G + +  L  
Sbjct: 128 VAIRTENGAVSAVVTHTGAVFAVKAAIIATGTYLGGRTIVGEVVRDSGPDGLAAALPLTQ 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTP R++ +++ + + E Q  D    PFSF T +    +  C +T 
Sbjct: 188 SLLELGVSIRRFKTGTPPRVNARSVDFSQMELQEGDPDAQPFSFTTREHPQNRAVCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +Y G I+  GPRYCPSIE KIVRF ++  HQ+F+EP GL+T+ 
Sbjct: 248 TNAKTHDIIRANLDRSPLYDGTIEGVGPRYCPSIETKIVRFPDKERHQLFVEPMGLDTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G S++LPE++Q + + TIPGLE+  + RP YAIEYD I+P +L  TLE K + GL+
Sbjct: 308 LYIQGFSSSLPEQVQIEMLHTIPGLEQAEMTRPAYAIEYDCIDPTQLLATLEVKTVPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAA QG VAG+N+A K    +     R   YIGV+IDDL +KG  EPY
Sbjct: 368 GAGQFNGSSGYEEAAVQGFVAGVNAALKIQGKEPFILGRDQGYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFLRSLLKSLVL 483
           RM TSR EYR+  R DNAD RLTP+G +LG +  E+ +   AKY       + L  + V 
Sbjct: 428 RMMTSRTEYRLLHRQDNADQRLTPLGYELGLVPKEQLEAVQAKYAAVDRECKRLEHTGVA 487

Query: 484 TSKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            S  L +      Q      A   + L  P  S ++L    PD    S  + + ++I   
Sbjct: 488 PSPALDAFLAERNQAPVQNGARLADLLRRPPVSYESLAPFDPDRPDLSPEITQAVEIAVK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ+ + +E+K  E   +P D DY ++  L  E ++KL  ++P NL QAS++ G+
Sbjct: 548 YQGYIQRQLRQVEEMKKLESWPLPADTDYEAIQGLRLEARQKLQQIRPRNLGQASRVSGV 607

Query: 602 TPAALNLLLIYIKKNT 617
           +PA + +L++Y+K+ T
Sbjct: 608 SPADVAVLMVYLKQRT 623


>gi|260910778|ref|ZP_05917430.1| glucose-inhibited division protein A [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635100|gb|EEX53138.1| glucose-inhibited division protein A [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 623

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/622 (40%), Positives = 368/622 (59%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  A +LGA T LIT   + I  MSCNPA+GG+ KG +VRE+DAL
Sbjct: 5   YDVLVIGGGHAGCEAACAATRLGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D+  IQFR+LN  KGPAV  PR Q DR  Y    +  + S E LD+ Q +  
Sbjct: 65  GGEMGIITDSTSIQFRMLNKGKGPAVWSPRAQCDRAKYITKWRETLDSIEGLDIWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +     +  R  ++V+T GTFL G++H+GK++IP GR  +        S
Sbjct: 125 ELLVENGTAVGVRTLWGAEFRAKSIVITAGTFLNGLMHVGKVQIPGGRCAEPAVYRFSES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      R+KTGTP R+D +T+ +++ E+Q  +     FS+M    T  Q+ C    T
Sbjct: 185 ITRHGIAVDRMKTGTPVRIDARTVHFEEMERQDGEVDFHQFSYMGTPRTLTQLPCWTFYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             E H+ + E I  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG NT  +
Sbjct: 245 TQEAHQALQEGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHLLFLEPEGENTAEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P ++Q   +R IP L      RPGYAIEYDY +P  L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPLDVQLNALRKIPALRDAKAFRPGYAIEYDYFDPTLLHASLESKIIKGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEAA QGLVAGIN+A   N  +     R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAAGQGLVAGINAAIACNGGEPFVMKRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    K+G      ++R+  +I++   +  +++    ++
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERAYKIGLAS---RQRYDHWIEKKESIERIIRFCETST 481

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
              +  + + ++ G T         + ++ P  ++Q L  + P+ +            ++
Sbjct: 482 VRANYINAALERWGTTPLNGSVKLADLIARPQLNVQGLAEVLPELKAVIEQTPNRKEEIV 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A +++  E   I   F+Y  L  +S E ++KL+ + P  L 
Sbjct: 542 EAAEIKMKYKGYIEREKIVADKMRRLENIRIKGHFNYEELHEISTEGRQKLARINPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLMNR 623


>gi|307128531|ref|YP_003880561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           mnmG/GidA [Candidatus Sulcia muelleri CARI]
 gi|306482993|gb|ADM89863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           mnmG/GidA [Candidatus Sulcia muelleri CARI]
          Length = 613

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/628 (42%), Positives = 376/628 (59%), Gaps = 28/628 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGH+G EAA  A+ LG+ T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVNQYDVIVVGGGHSGSEAALAASNLGSRTLLITTNLYNIGQMSCNPAMGGIAKGQIIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR    + +RL +++ +    N
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKNV----N 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L   Q  V     + N +  +       I+  +V+LT GTFL G+IHIG  K   GR+ +
Sbjct: 117 LSFYQDTVIDLIIKNNKVIGVKTIFGISIKSKSVILTNGTFLNGIIHIGNKKKNGGRISE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +    L     K  F +G++KTGT  RLDG ++ + K  +Q  D  + PFS ++      
Sbjct: 177 NSVKGLTEKLKKIGFLSGKMKTGTSPRLDGNSLNYSKMIEQLGDYPIEPFSSLSKLKIKN 236

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           + +C IT TN++TH+++ E    S +++G+IK  GPRYCPSIE+KI RF  +  HQIF+E
Sbjct: 237 KKKCYITYTNVKTHKLLREKFHKSPLFNGNIKCVGPRYCPSIEEKIYRFSNKENHQIFVE 296

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG+NT  VY NG ST++PE+IQ++ + TIPG EK  +IRPGYAIEYDY  P +L   LE
Sbjct: 297 PEGVNTREVYINGFSTSMPEKIQYKALITIPGFEKAKMIRPGYAIEYDYFTPTQLKNNLE 356

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK I  LF AGQINGTTGYEEAAAQGL+AGIN+  K N+       R ++YIGV+IDDL 
Sbjct: 357 TKLIENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKKPFIIKRNEAYIGVLIDDLI 416

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            KG  EPYRMFTSRAEYRI LR DNAD RLTPIG KLG +               +F R 
Sbjct: 417 YKGTEEPYRMFTSRAEYRILLRQDNADERLTPIGEKLGLV---------------SFDRI 461

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPD---ARKFSSL 531
                 +            K+  +     + LS P+  I ++  +S+  D       +  
Sbjct: 462 KKLEKKIKKIKKCLFFFKKKKIKENIKICDLLSRPEIDINDIIKYSLIKDFIKKNNINKK 521

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E++ I   Y  Y  ++    K++   E   IP +F+Y+ + ++S E +EKL   KP +
Sbjct: 522 ILEQISILIKYKGYLLKEEENVKKMLRLENIRIPNNFNYNKVKSISIEAREKLINYKPNS 581

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVK 619
           + +AS+I G++P+ +++L+I+++K   K
Sbjct: 582 IGEASRISGVSPSDISILIIFLRKKNKK 609


>gi|281355411|ref|ZP_06241905.1| glucose inhibited division protein A [Victivallis vadensis ATCC
           BAA-548]
 gi|281318291|gb|EFB02311.1| glucose inhibited division protein A [Victivallis vadensis ATCC
           BAA-548]
          Length = 624

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/625 (42%), Positives = 359/625 (57%), Gaps = 13/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA  +A++GA T LIT     I  MSCNPAIGG+ KG +VREIDA+
Sbjct: 4   YDVVVIGAGHAGCEAAMASARIGAKTLLITLNMDHIAQMSCNPAIGGIAKGQVVREIDAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D+A IQFR+LN  KGPAV  PR+Q D+  Y+  M+  +     +DV+Q EV 
Sbjct: 64  GGAMGIVTDSASIQFRMLNRTKGPAVWSPRSQCDKVCYQRGMKLWLEQMPQVDVLQSEVT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +   I+ +  Q    I C+  V+TTGTFL G +H G    P GR GD PSNSL  +
Sbjct: 124 AFLMDNGKITGVTNQFGDEIHCAAAVVTTGTFLNGKLHYGLRNFPGGRAGDFPSNSLSAA 183

Query: 186 F-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-------DKITNRQ 237
              +     GRLKTGTPAR+  KTI + +  +Q  D     FS  +        +     
Sbjct: 184 LGEQLKLRLGRLKTGTPARILAKTIDFSQMARQECDSAEERFSCWSAGHSPALPEAVRHD 243

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C    +  ET  I+  N+++S +Y G IK  G RYCPS EDK+VRF +   H +FLEP
Sbjct: 244 LPCYQVYSTDETAEIVRRNLQYSPMYQGVIKGIGTRYCPSFEDKVVRFPQHPRHLLFLEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG  T+  Y NG+ST+LP E+Q Q I ++PG+E   + R  YAIEYD++ P +L  TL  
Sbjct: 304 EGAQTEEYYINGLSTSLPPEVQRQLIHSVPGMEHAVLSRYAYAIEYDFVFPDQLERTLRI 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K    LF AGQINGT+GYEEAA QGL+AG+N+AR +     +   R  SYIGVMIDDLT+
Sbjct: 364 KSCDNLFTAGQINGTSGYEEAAGQGLLAGLNAARIAQGKSPVELGRDSSYIGVMIDDLTT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K ++EPYR+FTSRAEYR+ LR DNAD RL+    + G + E + + F  Y      +  L
Sbjct: 424 KDIIEPYRLFTSRAEYRLVLRQDNADLRLSEFAYETGLLPESKYREFCAYRSALTEVLEL 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +S     K+L         +     A   L +P      L     D R+   +  E LQ
Sbjct: 484 CRSRRHAGKSLLVHLKDLPDNTPLAEATVRLPFP----AGLLPELNDDRQGRRIWRE-LQ 538

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +E+ Y  Y  R+  E   ++  E   IP DFDY  +  LSNE + KL  ++P  L QA +
Sbjct: 539 VEARYDGYLQREAAEISRLRKLETLQIPADFDYDRIKGLSNESRSKLLKVRPTTLAQAGR 598

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I+G+TPA + LL + + +   +  E
Sbjct: 599 IDGVTPADIALLQVALSRKNREATE 623


>gi|237752671|ref|ZP_04583151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376160|gb|EEO26251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 629

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/629 (44%), Positives = 372/629 (59%), Gaps = 29/629 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA+ V+A++G  T L+T     IG+ SCNPA+GGLGKGHLV+EIDAL
Sbjct: 3   YDVIVIGGGHAGIEASIVSARMGCKTLLLTMLVEQIGAASCNPAVGGLGKGHLVKEIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG + D +GIQFR LN  KGPAVRG R Q D + Y++  +      +NL+V Q  V 
Sbjct: 63  GGVMGYITDKSGIQFRTLNASKGPAVRGTRAQIDMDRYKIIARNLCYHTKNLEVSQQIVE 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK+ +  +      + +   VVLTTGTFLRG IHIG+     GR G+ P+  L  +
Sbjct: 123 SLVLEKDSVIGVKTTIGKVYQAKKVVLTTGTFLRGKIHIGENTSNNGRAGEPPAMELGEN 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--------- 236
             +   D G LKTGT AR+   +I ++  EK + D   +P  F + K             
Sbjct: 183 LRELGLDVGILKTGTCARIKASSINFEILEKHYGD---MPAPFFSKKTQKELGENPFNPM 239

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN +TH II EN   + +++G I+  GPRYCPSIEDK+ RF ++  HQ+FLE
Sbjct: 240 QLPCYVTYTNAKTHAIIRENFHRAPMFTGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLE 299

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           P+ L  +  Y NG++++LP ++Q   I +I GLE   I+R GYAIEYDYINP EL  TLE
Sbjct: 300 PQTLEANEYYINGLTSSLPFDVQEAMIHSIEGLENAEIVRYGYAIEYDYINPTELKHTLE 359

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TKKI  L+ AGQINGTTGYEEA AQG+ AGIN+A      + I   R ++YIGVM+DDL 
Sbjct: 360 TKKIRNLYCAGQINGTTGYEEAGAQGIFAGINAALSVKGKEQITLKRNEAYIGVMVDDLV 419

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK---YIQE-YN 472
           +KG  EPYRMF+SRAEYR+ LR  NA  RL  +   LG + E   K   K    I+E   
Sbjct: 420 TKGTKEPYRMFSSRAEYRLLLREGNAIFRLGDLAYSLGLMEEEEYKELQKDKVAIKEGLE 479

Query: 473 FLRSLL---KSLVLTSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
           +L++      +LVL   N +    IS K +  T         P          CP A  +
Sbjct: 480 WLKNTEVTPNALVLKFLNSICEEKISDKTNWGTIVGRRSFDVPKLLKIQEVENCPFA-SY 538

Query: 529 SSLVIERLQIESSYAAYTGRQ--MIEA--KEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
           S   +E + +E+ Y  Y  +Q  MIE   K +  E    IP+DF +  +P LS E+ EKL
Sbjct: 539 SERALEEILVEAKYFNYIQKQQNMIENMDKMLSIE----IPQDFVFDKIPGLSLEVIEKL 594

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYI 613
               P +L +AS+I G+TPA+L +L +YI
Sbjct: 595 KKFNPKSLFEASEISGVTPASLEVLQLYI 623


>gi|298243492|ref|ZP_06967299.1| glucose-inhibited division protein A [Ktedonobacter racemifer DSM
           44963]
 gi|297556546|gb|EFH90410.1| glucose-inhibited division protein A [Ktedonobacter racemifer DSM
           44963]
          Length = 686

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/664 (39%), Positives = 390/664 (58%), Gaps = 57/664 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCE+A  +A++G  T L+T    ++  M CNP++GG  KGHL++EIDAL
Sbjct: 20  YDVIVVGAGHAGCESALASARMGLKTLLLTMNLDSVALMPCNPSMGGPAKGHLIKEIDAL 79

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GR  D   IQ R+LN  KGPAV+  R Q D++ YRLAM+  + SQ NLD+ Q  + 
Sbjct: 80  GGEIGRNTDRTFIQMRLLNTSKGPAVQALRAQCDKQAYRLAMKFVLESQPNLDLRQATIL 139

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                  +  ++++  +V  +       +VV+TTGTF+ G + +G+   P GR G+ P+ 
Sbjct: 140 RLLSTQRDDGRHVMHGVVTSNGWEYHARSVVMTTGTFINGRLVVGEKTQPGGRAGEGPAL 199

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---- 236
            + +S      +  R KTGTP R+D +TI + KTE+Q      IP  F  D         
Sbjct: 200 GISDSLRALGLEMRRFKTGTPPRIDARTIDFSKTERQPGS--TIPLYFSQDTEAREDIQV 257

Query: 237 ---------------------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C + RT   TH+II +N+  S +Y+G I+  GPRYC
Sbjct: 258 PGGKPNSVYPVLEEDLRGWRPQLPCYLVRTTERTHQIIRDNLHRSPLYTGIIEGVGPRYC 317

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIVRF ++  HQIFLEPEG  T  VY  G++T+LPE++Q + +R+IP LEK  I+
Sbjct: 318 PSIEDKIVRFADKVSHQIFLEPEGWRTGEVYVQGMNTSLPEDVQLEMLRSIPALEKAEIM 377

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R GYA+EYDY+ P +LFPTLETK ++GLFLAGQINGT+GYEEAAAQG++AGIN+A  +  
Sbjct: 378 RVGYAVEYDYVLPTQLFPTLETKPVAGLFLAGQINGTSGYEEAAAQGIMAGINAALYARG 437

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            D     R ++YIGV+IDDL ++ + EPYR+ TSRAE+R+ LRP++AD RL     +LG 
Sbjct: 438 EDGFVLGRHEAYIGVLIDDLVTRPMSEPYRLHTSRAEHRLLLRPESADLRLGDHAYRLGM 497

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPD 512
           IG+ R ++  +  +       +L+S+  TS  ++   + ++     G+  +A E L  P 
Sbjct: 498 IGDERYEQVVRKREAIQSTLEVLESVSFTSSRVTEQHAETLGIAPLGQKMSAKELLRRPA 557

Query: 513 ---FSIQNLFS------ICPDARKFSSLVI-----------ERLQIESSYAAYTGRQ-MI 551
              F I  L        +  D  + +S +            E ++++  Y  Y  +Q  +
Sbjct: 558 VKYFQIAQLSQRMVEERVSMDGAESASRIFMELTDLPEDTAEEVELQVKYENYVRKQEQL 617

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
             +  + EE R IP++ DY  +  L  E ++KL   +P  + QAS++EG+TPA + +L++
Sbjct: 618 VRRTSRLEEMR-IPENLDYRDVQHLRTEARQKLLKTQPRTVGQASRVEGVTPADIAILMV 676

Query: 612 YIKK 615
           YI+K
Sbjct: 677 YIQK 680


>gi|292669285|ref|ZP_06602711.1| glucose inhibited division protein A [Selenomonas noxia ATCC 43541]
 gi|292649126|gb|EFF67098.1| glucose inhibited division protein A [Selenomonas noxia ATCC 43541]
          Length = 626

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/626 (43%), Positives = 382/626 (61%), Gaps = 21/626 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP+IGG GK HLVREI
Sbjct: 4   NTNYDIIVIGAGHAGVEAALAAARMGRRTLILTLSLDNIAMMPCNPSIGGPGKSHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENL V Q 
Sbjct: 64  DALGGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLHVRQL 123

Query: 123 EVAGFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V    +E++     ++ IV +    +    V+L TGT+LRG I +G+    +G  G  P
Sbjct: 124 LVTELLSEEHAGEKRVTGIVCETGERLTARAVILATGTYLRGRIILGETIYDSGPNGQRP 183

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           S SL +S         R KTGTPAR+D ++I + KT  Q  D     FSF+T+++   Q 
Sbjct: 184 SMSLSDSLRAVGLKLMRFKTGTPARIDRRSIDFAKTSMQEGDPAAPAFSFLTNEMPAEQT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN ETH +I  N+  + + +G I+  GPRYCPS+E KI RF ++  HQ+FLEPE
Sbjct: 244 PCWLTYTNEETHAVIRANLHRAPMANGVIEGIGPRYCPSVETKIARFPDKERHQLFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+ST+LP ++Q  F+ TIPGLE   I+RPGYAIEYD ++P +L  TL  K
Sbjct: 304 GLHTNEMYVQGMSTSLPTDVQEAFLTTIPGLEHARIMRPGYAIEYDCLDPLQLEATLAVK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GL+ AGQ NGT+GYEEAAAQGL+AGIN+AR     + +   R+D YIGV+IDDL +K
Sbjct: 364 GIAGLYSAGQSNGTSGYEEAAAQGLIAGINAARSIGGEEPLVLRRSDGYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DNAD RLTP G  +G + + R  RF       +   +LL
Sbjct: 424 GTEEPYRMMTSRAEYRLVLRQDNADLRLTPRGRAVGLVTDERWVRFTAKRDAIDAALALL 483

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL------- 531
           +   L+    S+ + +   D         L  P  S+  L S   D R  ++L       
Sbjct: 484 RERRLSP---SAETEALLADA----GISPLRVP-MSLFALLSREGDYRVLAALFDLPALA 535

Query: 532 --VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E ++I + Y  Y  +Q  +   ++  E R IP +FDY+++ +L  E  EKL+ ++P
Sbjct: 536 DDVREEVEITARYDGYIRKQEEQIARMERLESRRIPAEFDYAAVTSLRLEAAEKLAAVRP 595

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            ++ QAS+I G++PA +++LL+Y+++
Sbjct: 596 RSIGQASRISGVSPADISVLLVYLER 621


>gi|159489444|ref|XP_001702707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydomonas reinhardtii]
 gi|158280729|gb|EDP06486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydomonas reinhardtii]
          Length = 625

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/617 (42%), Positives = 374/617 (60%), Gaps = 10/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  LV E+DAL
Sbjct: 4   YDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDRIGWQPCNPAVGGPAKSQLVHEVDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q RVLN  KGPAV   R Q D++ Y   +++ +    NL++ +  V 
Sbjct: 64  GGEIGKMADRCYLQKRVLNRSKGPAVWALRAQTDKQEYSRVIRKVLEETPNLEIREAMVV 123

Query: 126 GFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           G +   N  +  +            VVLTTGTF+ G I +G+  + AGR G++ S  L  
Sbjct: 124 GLDVGPNDQVRGVRTYFGITFAARAVVLTTGTFMNGTIWVGRQSMSAGRAGEAASVGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           +  +  F+T RLKTGTPAR+D +T+ +   E Q  DE    FSF  +  +   Q+ C +T
Sbjct: 184 ALQQLGFETDRLKTGTPARIDSRTVDFGALEPQPGDEDERWFSFDPEVHVPRPQLSCYLT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ETHR+I EN++ + IY G + S GPRYCPSIEDKIVRF +++ HQIFLEPEG +T 
Sbjct: 244 RTTAETHRLIRENLQETPIYGGWVDSKGPRYCPSIEDKIVRFADKDSHQIFLEPEGRDTP 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST LPE +Q   ++T+PGL +V ++RP YA+EYDY+   +  PTLETKKI GL
Sbjct: 304 EMYVQGFSTGLPERLQLALLQTLPGLGRVKMLRPAYAVEYDYLPAHQCHPTLETKKIRGL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F +GQ+NGTTGYEEAAAQGLVAG+N+A ++ +   +   R  SY+G ++DDL +K + EP
Sbjct: 364 FFSGQLNGTTGYEEAAAQGLVAGMNAALRAQERPPVALPRDSSYLGTLVDDLVTKDLREP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTP+G  +G + +RR   F          ++ L +  +
Sbjct: 424 YRMLTSRSEYRLLLRSDNADRRLTPLGRDIGLVDDRRWALFTAKQARIEAEKARLGTTRV 483

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR---KFSSLVIERLQ 537
            + +     + S+S      + T  E L  P      L     D     +FS    E ++
Sbjct: 484 RADSPVAAEAGSLSGHAVPGSPTLEELLRRPHVHYSVLERHGLDGGEQLRFSER--EAVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA +  RQ  +   +  +  + +P D DYS++  LS E +EKL  ++P ++ QAS+
Sbjct: 542 IDIKYAGFIARQEKQLASLASKASKPLPADLDYSAIATLSMEAREKLGKIRPRDIGQASR 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G++PA ++ LL++++
Sbjct: 602 IGGVSPADVSALLVHLE 618


>gi|304413041|ref|ZP_07394514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Regiella insecticola LSR1]
 gi|304283884|gb|EFL92277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Regiella insecticola LSR1]
          Length = 597

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/620 (43%), Positives = 374/620 (60%), Gaps = 58/620 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGCQTLLLTHNIETLGEMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG+                                           E+L +      
Sbjct: 67  GGLMGKAI-------------------------------XXXXXXXXXXEDLII------ 89

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++  V +     R  TV+LT GTFL G IHIG      GR GD  S +L + 
Sbjct: 90  ----ENNSVAGAVTKTGQRFRAKTVILTVGTFLDGKIHIGLENHSGGRAGDPASITLSHR 145

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGIT 243
             +      RLKTGTP R+D KTI + +   Q  D  +  FSF+ D +T R  QI C IT
Sbjct: 146 LKELPLRVNRLKTGTPPRIDAKTIDFSQLTVQLGDTPIPNFSFL-DHLTQRPKQIACHIT 204

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II  N+  S +Y+G+I+  GPRYCPSIEDK+VRF +R+ HQIFLEPEGLN++
Sbjct: 205 HTNKKTHEIIRNNLDRSPMYTGEIEGIGPRYCPSIEDKVVRFADRDTHQIFLEPEGLNSN 264

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP + Q   I +I G+E   IIRPGYAIEYDY +P++L  TLE+K + GL
Sbjct: 265 EIYPNGISTSLPLDTQINLIHSIKGMENARIIRPGYAIEYDYFDPRDLKNTLESKHLHGL 324

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R ++Y+GV++DDL++ G  EP
Sbjct: 325 FFAGQINGTTGYEEAAAQGLLAGLNAARLAKGKESWSPRRDEAYLGVLVDDLSTLGTKEP 384

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG  LG + + R K + + +++    R  L++  +
Sbjct: 385 YRMFTSRAEYRLMLREDNADLRLTKIGRGLGLVDDDRWKHYCEKVEKIEKERQRLRNTWV 444

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +  +        L  T +S + +G+       ++Y + +  NLF   P  + + +    +
Sbjct: 445 SPHSPHITQLNKLLKTPLSKEANGEELLRRPEINYHNLTALNLFG--PALQDYQAAA--Q 500

Query: 536 LQIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++I++ Y  Y  RQ  E  K+++ E  +L   + +Y  +P LSNE+  KL+  KP ++ Q
Sbjct: 501 VEIQTKYQGYIERQQEEITKQLRNENTKL-SINTNYHEIPGLSNEVIAKLNDHKPHSIGQ 559

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+TPAA+++LLI++K
Sbjct: 560 ASRISGITPAAISILLIWLK 579


>gi|41058547|gb|AAR99253.1| glucose-inhibited division protein A [Candidatus Blochmannia
           sansabeanus]
          Length = 591

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/591 (46%), Positives = 377/591 (63%), Gaps = 25/591 (4%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNPAIGG+GKGHLV+EID++ G M    D AGIQFR+LN  KG AVRG R QAD+
Sbjct: 1   LGQMSCNPAIGGIGKGHLVKEIDSMGGAMAYAIDNAGIQFRILNKSKGAAVRGTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
            LYR  ++  +  Q+ L +IQ  V      KN I  + +    M I  ++VVLTTGTFL 
Sbjct: 61  MLYRQMIRNVLEYQDFLLIIQASVEDLIISKNKIVGVFVPKIGMKINATSVVLTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G +HIG      GR GD  S+SL +  +K F    GRLKTGT  R+  K I +D  + Q+
Sbjct: 121 GKMHIGMNNFIGGRAGDIESSSLLSKRLKEFSLRVGRLKTGTSPRVHSKGINFDVLQAQY 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSF+ ++K   +Q+ C IT TN +TH I+  N+  S I +G I+   PRYCPS
Sbjct: 181 SDNPVPVFSFIGSEKQHPKQVPCYITYTNDKTHEIVRSNLNQSPIQTGLIEGTAPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK+ RF +RN HQIFLEPEGL T  +Y NGIST+LP  +Q Q I++I GLE  +IIRP
Sbjct: 241 IEDKVTRFSDRNAHQIFLEPEGLTTSEIYLNGISTSLPFYVQIQIIQSIQGLENAHIIRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   +
Sbjct: 301 GYAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKE 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG + 
Sbjct: 361 GWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTAIARQLGLVD 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLT-----SKNLSS---TSISFKQDGKTRTAYEFLS 509
           E R K F    +     R  L++  +      +K L+S   T + ++  G+     E L 
Sbjct: 421 ELRWKNFCLKKENIEKERQRLRNTYIVPYSTDAKQLNSFIKTPLIYEVSGE-----ELLR 475

Query: 510 YPDFSIQNLFSICPDARKFSSLVIER-----LQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
            P+ +  NLF +    + FSS +++R     ++I+  Y  Y   Q  E +   + E  L+
Sbjct: 476 RPEINYTNLFKL----KSFSSFMLDRQVYEQIEIQIKYEGYIRHQQKEIERNIYNEHILL 531

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           P + DY+ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 532 PTNIDYNIISGLSKEVIDKLNDYKPYSIGQASRISGITPAAISNLLVWLKK 582


>gi|291277040|ref|YP_003516812.1| glucose inhibited division protein A [Helicobacter mustelae 12198]
 gi|290964234|emb|CBG40083.1| glucose inhibited division protein A homolog [Helicobacter mustelae
           12198]
          Length = 632

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/632 (42%), Positives = 368/632 (58%), Gaps = 19/632 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA+ ++A++GA T L+T     IG  SCNPAIGGLGKGHLV+E+D
Sbjct: 3   REWDVLVIGGGHAGIEASCISARMGARTHLLTMLIENIGLASCNPAIGGLGKGHLVKEVD 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MGR++D +GIQ+R+LN  KGPAVRG R Q D + YR+  +  +L   NL V Q  
Sbjct: 63  ALGGVMGRLSDKSGIQYRILNASKGPAVRGTRAQIDMDAYRIHARNHVLHTPNLSVSQEV 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   I  +            V++TTGTFLRG++HIG+ +   GR G+  +N L 
Sbjct: 123 VEELLVEDGKIKGVKTNIGKCYFAKKVIITTGTFLRGLVHIGESQSQNGRFGEDSANKLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +  F+ GRLKTGT  R+DG++I +   E    DE    FS+ T      Q+ C +T
Sbjct: 183 LSLKELGFELGRLKTGTCPRIDGRSIDFSGLEIHHGDEIPPHFSYHTKDFAPSQLPCFVT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N   + +++G I+  GPRYCPSIEDK+ RF  +  HQ+FLEP+  +  
Sbjct: 243 YTNAKTHEIIAQNFHRAPLFTGQIEGVGPRYCPSIEDKVHRFASKERHQLFLEPQTRDGV 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG+ST+LP +IQ   I +I GLE   I R GYAIEYDY NP  L+ TLET+ ISGL
Sbjct: 303 EYYVNGLSTSLPYDIQELVIHSIAGLENARITRYGYAIEYDYCNPTALYHTLETRLISGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSA------RKSNKLDCICFSRTDSYIGVMIDDLTS 417
           + AGQINGTTGYEEAAAQG++AGIN+        +   ++ +   R + YIGVMIDDL +
Sbjct: 363 YFAGQINGTTGYEEAAAQGIMAGINAVLSLEGNAQKFGMEQLVLRRDEGYIGVMIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYR+FTSRAEYR+ LR DNA  RL     +LG + E   +   K  ++ +     
Sbjct: 423 KGTNEPYRVFTSRAEYRLLLREDNALFRLGKYAYRLGLMEEEDYQMLQKDQEDIDRGMEF 482

Query: 478 LKSLVLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           L    LT         + +    I  K         +  S   F + + F      + FS
Sbjct: 483 LTKKTLTPSKETLALLEKIHEAPIVDKCSAVLVAGRDSFSEEKFDVLDEF-----FKDFS 537

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
                +L+I   Y AY  +Q    ++++   +  IP DF +  +  LS E+ EKL++ +P
Sbjct: 538 LRARSQLRILCKYDAYIEKQKQSVEQMEEMLRIKIPGDFVFEGIAGLSLEVVEKLNLHRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             L  A  I G+TPA+L +L +YI  +  K N
Sbjct: 598 ATLFHAKNISGITPASLEVLHLYIHLHHKKSN 629


>gi|227508119|ref|ZP_03938168.1| glucose-inhibited division protein A [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227192348|gb|EEI72415.1| glucose-inhibited division protein A [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 645

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/626 (41%), Positives = 374/626 (59%), Gaps = 14/626 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+G GHAGCEAA  AA++G  T ++T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  KNYDVIVVGAGHAGCEAALAAARMGNKTLVLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAV+  R QAD+  Y   M+  + ++ NL + Q  
Sbjct: 76  ALGGEMGRNIDKTYVQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTMENEPNLTLRQAI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAKYFAKSVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDK---ITNRQIE 239
            S  +  FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF  +DK       Q+ 
Sbjct: 196 GSLEELGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDKDYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q Q + TI GLE   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQQMLHTISGLENAEMMRPGYAIEYDVVAPYQLKPTLETKI 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QG++AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGIIAGINAGRRALGQGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS--- 476
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I +   +R+A+++ +   + S   
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISD---ERYAQFLSKKRAIESEID 492

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDA-RKFSSLV 532
            L S+ +   +  +  +    D   +    A  FL  P    Q L     D        V
Sbjct: 493 RLNSIRIKPSDAVNKFVEAHGDKPLKDGVIASVFLRRPYVDYQTLLQFISDPEHHLDRHV 552

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  +
Sbjct: 553 IEQVEIQTKYAGYIAKAESSVEKMKRMEAKKIPNRIDYEAIDGIATEARQKLQKIHPETI 612

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            QAS+I G+ PA + +L +YI++  +
Sbjct: 613 AQASRISGVNPADIAILSVYIQQGKI 638


>gi|194216193|ref|XP_001914686.1| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform b (predicted) [Equus caballus]
          Length = 689

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/612 (43%), Positives = 385/612 (62%), Gaps = 25/612 (4%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
            S  L+TH+   IG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KG
Sbjct: 58  GSRLLLTHRADVIGQMSCNPSFGGIGKGHLMREVDALDGLCCRICDQSGVHYKVLNRRKG 117

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQ 140
           PAV G R Q DR+LY+  MQ+EIL+   L V +G V           +T K  +  +V+ 
Sbjct: 118 PAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVHGVVLV 177

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D S +   +V+LTTGTFLRGV+ IG    PAGR+GD PS  L  +  +  F  GRLKTGT
Sbjct: 178 DGSTVFAESVILTTGTFLRGVMVIGLEMHPAGRLGDQPSIGLAQTLERLGFVVGRLKTGT 237

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENI 257
           P R+  ++I +    KQ  D    PFSF+ + +  +   Q+ C +T TN     I+++N+
Sbjct: 238 PPRIAKESINFSILNKQTPDNPPTPFSFIHETVWIKPEDQLPCYLTHTNPRVDEIVLQNL 297

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             ++      +  GPRYCPSIE K++RF  R  HQ++LEPEGL++ ++YP G+S  LP E
Sbjct: 298 HLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVWLEPEGLDSGLIYPQGLSVTLPAE 354

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           +Q + I  I GLEK  +++PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEE
Sbjct: 355 LQEKMITCIRGLEKAKMVQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEE 414

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AAAQG++AGIN++ +  +      SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R+SL
Sbjct: 415 AAAQGVIAGINASLRVRRQPPFIISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSL 474

Query: 438 RPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTS 492
           RPDNAD+RLT  G K  GC+ ++R +R +          S+LKS+  +S    K +   S
Sbjct: 475 RPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIPEAS 534

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQ 549
           IS  +    R A + L Y +  ++ L    P+  +K++    + +RL+IE++Y +    Q
Sbjct: 535 ISVSKSLPLR-ALDVLKYEEVDMEVLAKAIPEPLKKYTECRELAKRLKIEATYESVLFHQ 593

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALN 607
             E KE++  E   +P+D DY +L   +LS E++EKL   +P  +  AS+I G+TPAAL 
Sbjct: 594 QQEIKEVQRNEALQLPEDLDYLTLRDVSLSYEVREKLQFSRPLTIGAASRIPGVTPAALI 653

Query: 608 LLLIYIKKNTVK 619
            LL ++K    K
Sbjct: 654 NLLRFVKTTQQK 665


>gi|33862231|ref|NP_893792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|81170571|sp|Q7TU19|MNMG_PROMP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33634449|emb|CAE20134.1| Glucose inhibited division protein A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 654

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/637 (43%), Positives = 371/637 (58%), Gaps = 24/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV EI
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGQLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 EVAGFN-TEKNIISSIVMQDNSMIR-----------CSTVVLTTGTFLRGVIHIGKLKIP 170
            +      E    S+ +      I+             ++++T GTFL G I IG   + 
Sbjct: 128 MITELVIKEAETFSNNLKNKTKKIKGVKTFFGTYYYAKSIIITAGTFLEGRIWIGNKSMS 187

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G+  +  L  S       T RLKTGTPAR+D K+I +D+ + Q +      FSF  
Sbjct: 188 AGRSGEQAAQGLTQSLHNLGIKTERLKTGTPARVDKKSISFDELDIQPSTASDKYFSF-D 246

Query: 231 DKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            KI N   Q+ C ITRT L+TH +I  N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 247 PKIKNNMPQVSCHITRTTLKTHELIRNNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 306

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           N HQIFLEPEG+NT  +Y  G ST LPE IQ   +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 307 NSHQIFLEPEGINTPEIYVQGFSTGLPENIQLDLLRTLPGLNKCKMLRPAYAVEYEYIPA 366

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LET +I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK N  D I FSR  SYI
Sbjct: 367 TQLKSSLETIEIENLFSAGQINGTTGYEEAAAQGLVAGINATRKLNMKDPIIFSRESSYI 426

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR---QKRFA 465
           G MI+DL ++ + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I ERR    K+  
Sbjct: 427 GTMINDLITRDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGFEIGLIDERRWLAHKKKM 486

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSIC 522
           K ++E N   S L++  L   +  +  I      K +   T  E L  P+    +     
Sbjct: 487 KSLKEEN---SRLENTRLKCTDEIAKKIELDSGSKIKGSTTLKELLKRPNLHYSDFIRYD 543

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              +     VIE ++I+  Y  Y  RQ     +I  +  + +  + +Y  +  LS E +E
Sbjct: 544 LVDKTLPISVIEGVEIDIKYEGYLKRQKNNIDQINRQSLKSLSSEINYDQIDTLSLEARE 603

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            L+ +KP N   ASKI G++ A L  LL+++K   +K
Sbjct: 604 NLNKIKPTNFGDASKIPGVSKADLTALLVWLKIKELK 640


>gi|81301232|ref|YP_401440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus elongatus PCC 7942]
 gi|123556262|sp|Q31KG6|MNMG_SYNE7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170113|gb|ABB58453.1| glucose inhibited division protein A [Synechococcus elongatus PCC
           7942]
          Length = 635

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/617 (42%), Positives = 370/617 (59%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  L  E+DAL
Sbjct: 7   FDVIVIGAGHAGCEAALAAARLGCQTLLLTLNLDRIGWQPCNPAVGGPAKSQLAHEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   +++ +  Q NL + +G V 
Sbjct: 67  GGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVIKQVLEQQPNLRLREGMVT 126

Query: 126 ----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G N E   +  +     S  R   V+LTTGTFL G I +G   +PAGR G+  +  
Sbjct: 127 DLLIGPNDE---VQGVTTYFGSSFRAKAVILTTGTFLGGCIWVGNKSMPAGRAGEFAAVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L  +  +  F+T RLKTGTPAR+D +++ + + E Q  D  +  FSF  +    R Q+ C
Sbjct: 184 LTETLQRLGFETDRLKTGTPARVDKRSVDYSRLEPQPGDPEVRWFSFDPEAWVEREQLPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH++I +N+  + +Y G I + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 244 YLTRTTAETHKLIRDNLHLTPVYGGYIDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q   ++T+PGLE   ++RP YA+EYDY+   +  PTL T+++
Sbjct: 304 DIPELYIQGFSTGLPEDLQLALLQTLPGLEDCVMLRPAYAVEYDYLPATQCLPTLMTRRV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     D I F R  SYIG +IDDL +K +
Sbjct: 364 EGLFSAGQLNGTTGYEEAAAQGIVAGINAARFVQGQDAIVFPREGSYIGTLIDDLCTKDL 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        ++ L  
Sbjct: 424 REPYRVLTSRSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQ 483

Query: 481 LVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +    +I+ +     +   T  + L  P+F   +L +        +    E  +
Sbjct: 484 QRVKEHDPVGQAIAQQTQAPIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  RQ  +  ++  + +R +P D DYS++ ++  E +EKL+  +P  L QAS+
Sbjct: 544 IAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLTLGQASR 603

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LLI+++
Sbjct: 604 IGGVNPADINALLIWLE 620


>gi|149369360|ref|ZP_01889212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [unidentified eubacterium SCB49]
 gi|149356787|gb|EDM45342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [unidentified eubacterium SCB49]
          Length = 623

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/634 (44%), Positives = 393/634 (61%), Gaps = 30/634 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+G GHAG EAAA AA +GAST LIT     IG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKIYDVIVVGAGHAGGEAAASAANMGASTLLITMNLQNIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G ++D   IQF++LN  KGPA+  PR Q+DR    E +RL ++R      N
Sbjct: 61  EIDALGGYSGIISDDTAIQFKMLNKSKGPAMWSPRVQSDRMRFSEAWRLKLER----TPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  VAG   E + I+ +       +R  +VVLT GTFL G+IHIG  +   GR G+
Sbjct: 117 LDFYQEMVAGIVVEDSKIAGVKTSLGLTVRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN 235
             S  +    +   F+TGR+KTGTP R+DG+++ + K   Q  D     FS+ +  K   
Sbjct: 177 RASTGITKELVDLGFETGRMKTGTPPRVDGRSLDFSKMIVQPGDVNPEKFSYSSSTKPLT 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q +C +T T+ + H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+
Sbjct: 237 KQRDCHLTYTSPQVHDMLKEGFDRSPMFNGTIESLGPRYCPSIEDKINRFADKDRHQLFV 296

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG +T   Y NG ST+LPE+IQ + +R + G E V   RPGYAIEYDY  P +L  TL
Sbjct: 297 EPEGWDTVEYYINGFSTSLPEDIQFKALREVAGFENVKFFRPGYAIEYDYFPPTQLKHTL 356

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK ++GLF AGQINGTTGYEEAA+QGL+AGIN+A    + D     R ++YIGV++DDL
Sbjct: 357 ETKLVAGLFFAGQINGTTGYEEAASQGLMAGINAALLVQEKDPFILKRNEAYIGVLVDDL 416

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-------QKRFAKYI 468
            +KG  EPYRMFTSRAEYR  LR DNAD RLTP G +LG   E R       QK+   ++
Sbjct: 417 ITKGTEEPYRMFTSRAEYRTLLRQDNADFRLTPKGFELGLASEDRLREMEIKQKKSDAFV 476

Query: 469 QEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--- 523
              NF  +   S  + +  L +  +++  + D   R+     S P+ ++ ++  I     
Sbjct: 477 ---NFFTTTSVSHEVINPILEAKKSALVSQSDKMIRS----FSRPNITMDDMRKIAAVEE 529

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             +A +  + V+++ +I+  YA Y  ++   A ++   E   IP +FDYS L +LS E +
Sbjct: 530 YINANELDTEVLQQAEIQVKYAGYIAKEKNNADKLNRLEGIKIPDNFDYSKLKSLSFEAR 589

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           EKL+ +KP  + QAS+I G++P  +++LL+Y+ +
Sbjct: 590 EKLTKIKPVTVSQASRISGVSPNDISVLLVYMGR 623


>gi|295094323|emb|CBK83414.1| glucose-inhibited division protein A [Coprococcus sp. ART55/1]
          Length = 621

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 374/622 (60%), Gaps = 21/622 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++N  YDV+V+G GHAGCEAA  +A+LG +T + T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VLNEEYDVVVVGAGHAGCEAALASARLGLNTIIFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + +NL + 
Sbjct: 63  EIDALGGEMGKNIDKTYIQSKMLNASKGPAVHSLRAQADKANYSRTMKHTLENTDNLTLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    E N++  +     +      VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSEIIIEDNVVKGVKTYSGATYFAKAVVLCTGTYLKARCIYGDVVYHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S      +  R KTGTPARLD +TI + + E+Q  DE+++PFSF   +  I   QI
Sbjct: 183 YLSDSMKNAGIEIRRFKTGTPARLDKRTIDFSQMEEQKGDEKIVPFSFTNTEADIRRDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN +TH II +NI  S ++SG I+  GPRYCPSIEDK+ +F ++  HQIF+EPE
Sbjct: 243 SCWLCYTNEKTHEIIRDNIDRSPLFSGVIEGTGPRYCPSIEDKVTKFPDKTRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q++ I ++ GLE   IIR  YAIEYD IN   L P+LE K
Sbjct: 303 GEYTNEMYMGGMSSSLPEDVQYEMIHSMKGLENAKIIRNAYAIEYDCINAINLKPSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +SGLF AGQING++GYEEAAAQG++AGIN+ARK    + +   R+ +YIGV+IDDL +K
Sbjct: 363 SVSGLFGAGQINGSSGYEEAAAQGIMAGINAARKVQGKEAVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE-YNFLRSL 477
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I ++R   F K  Q+  + ++ L
Sbjct: 423 ETSEPYRMMTSRAEYRLLLRQDNADLRLTEIGHEIGLIDDKRYAAFTKKRQQIMDEIQRL 482

Query: 478 LKSLVLTS-------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
             ++V  +       +NL ST +         +  E +  P+ S + +  I     K   
Sbjct: 483 ESTMVGANSTIQKFLENLGSTGLK-----TAASLAELIRRPELSYEAIDPIDEGITKLPD 537

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            VIE++ I   Y  Y  RQ  +  + K  EK+ +P D DY+ +  L  E ++KLS+++P 
Sbjct: 538 DVIEQINITIKYQGYIDRQNQQVNQFKKLEKKKLPADIDYNDISNLRIEARQKLSLIRPE 597

Query: 591 NLLQASKIEGMTPAALNLLLIY 612
           N+ QAS+I G       L LIY
Sbjct: 598 NIGQASRISGF------LRLIY 613


>gi|163789247|ref|ZP_02183689.1| glucose-inhibited division protein A [Flavobacteriales bacterium
           ALC-1]
 gi|159875462|gb|EDP69524.1| glucose-inhibited division protein A [Flavobacteriales bacterium
           ALC-1]
          Length = 623

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/639 (43%), Positives = 386/639 (60%), Gaps = 44/639 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA +A +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNDVYDVIVVGAGHAGSEAAAASANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR    E +RL ++       N
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLE----GTPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V+G   E + +  +       ++  TVVLT GTFL G+IHIG      GR G+
Sbjct: 117 LDFYQEMVSGLIVENHKVVGVKTSLGIEVKAKTVVLTNGTFLNGLIHIGDKNFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITN 235
             +  +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FS++   K   
Sbjct: 177 RAATGITEQLVNLGFDSGRMKTGTPPRVDGRSLDYSKMIEQPGDENPEKFSYLDITKPLQ 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q  C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+
Sbjct: 237 EQRSCHMTYTSEQVHDLLREGFDRSPMFNGRIKSVGPRYCPSIEDKINRFADKDRHQLFV 296

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TL
Sbjct: 297 EPEGWNTCEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTL 356

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + +     R ++YIGV+IDDL
Sbjct: 357 ETKLVDGLYFAGQINGTTGYEEAASQGLMAGINASLKVQEREVFTLKRDEAYIGVLIDDL 416

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAEYR  LR DNAD RLTP G ++G   +RR  R  +   + +   
Sbjct: 417 ITKGTEEPYRMFTSRAEYRTLLRQDNADFRLTPKGYEIGLATKRRLSRMEEKQSKSDAFV 476

Query: 476 SLLKSL---------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              K           VL +KN S      KQ  K    ++  + P+ + Q       D R
Sbjct: 477 QFFKDTSVKPEEANPVLEAKNSSPV----KQQDK---MFKLFARPNITTQ-------DVR 522

Query: 527 KFSSL------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           KF+++            VIE+ +I+  YA Y  ++   A ++   E   IP DFDY+ L 
Sbjct: 523 KFNAVERYIQDNNLDTEVIEQTEIQVKYAGYIEKEKNNADKLNRLENLKIPVDFDYNKLK 582

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++S E ++KL+ ++P  + QAS+I G++P  +++LL+Y+
Sbjct: 583 SMSMEARQKLTEIQPVTISQASRISGVSPNDISVLLVYL 621


>gi|218438725|ref|YP_002377054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 7424]
 gi|218171453|gb|ACK70186.1| glucose inhibited division protein A [Cyanothece sp. PCC 7424]
          Length = 634

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/624 (42%), Positives = 374/624 (59%), Gaps = 23/624 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+IV+G GH+GCEAA   A+LG  T ++T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  SFDLIVVGAGHSGCEAALATARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +G  
Sbjct: 72  LGGEIGKMADRTYLQKRILNASRGPAVWALRAQTDKREYAAVMKQIVENQENLVIREGMA 131

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +     +      V+LTTGTFL G I IG   + AGR G+  +  L 
Sbjct: 132 TDLVLGKNDEVIGVQTYFGTCFAAKAVILTTGTFLGGRIWIGGKSMAAGRAGEFAAVGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
            +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE++  FSF  +    R Q+ C +
Sbjct: 192 ETLNQLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDEQVGWFSFDPEVWVEREQMNCYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 252 TRTTAKTHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE IQ   + T+PGLE   ++RP YA+EYDY+   + +PTL TKKI G
Sbjct: 312 PELYIQGFSTGLPENIQLAMLHTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKKIEG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAAAQG+VAGIN+ R       I F R +SYIG ++DDL +K + E
Sbjct: 372 LFCAGQVNGTTGYEEAAAQGIVAGINAVRFIKGQSMIVFPREESYIGTLVDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLR--- 475
           PYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR    Q++ A  I E   L    
Sbjct: 432 PYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLFQQKQANIIAEKERLHETR 491

Query: 476 -----SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
                 L K++V  +      SI    D   R  + +++   + + NL ++ P  +    
Sbjct: 492 IKENDELGKAIVADTGQKIKGSICLA-DLLRRPGFHYVNLEHYGLGNL-NLTPAEK---- 545

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E  +I+  Y+ Y  RQ  + ++I     R + ++ DY  +  LS E +EKL+ +KP 
Sbjct: 546 ---EGAEIDIKYSGYIKRQQNQIEQISRHSHRPLSENLDYMKIDTLSMEAREKLTKVKPL 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
            + QAS+I G+ PA +N LL+Y++
Sbjct: 603 TIGQASRIGGVNPADINALLVYLE 626


>gi|163791743|ref|ZP_02186130.1| glucose-inhibited division protein A [Carnobacterium sp. AT7]
 gi|159872985|gb|EDP67102.1| glucose-inhibited division protein A [Carnobacterium sp. AT7]
          Length = 631

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/621 (42%), Positives = 378/621 (60%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  AA++G+ T LIT     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NFDVIVVGAGHAGSEAALAAARMGSQTLLITINLDMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ +Y   M++ I   ENL + QG  
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFMYANEMKKTIEETENLVLRQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   I+    ++ R   V+LT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 DELIIEDGICKGIITNTGAIYRSKAVILTAGTSSRGQIIIGELKYSSGPNNSQPSIKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           S ++  F+  R KTGTP R+   TI +  TE+Q  DE+   FS+ T        Q+ C +
Sbjct: 188 SLLENGFELNRFKTGTPPRVKSSTIDYSVTEEQPGDEKPNHFSYETPNSAYLKDQLSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+ I +N+  + +++G ++  G RYCPSIEDK+VRF ++  HQ+FLEPEG NT
Sbjct: 248 TYTNEATHQKIQDNLHRAPMFTGIVEGVGARYCPSIEDKVVRFSDKPRHQLFLEPEGRNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L P+LETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQQDIIHSIEGLENAEMMRTGYAIEYDVVTPHQLRPSLETKIVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A K    +     R++ YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGINAALKVQGKEPFVMKRSEGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F    A++  E   L S+ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADFRLTEIGHEIGLVTKERYDTFVAKKAQFEGEIERLGSIR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           LK        L   + +  +DG    A +FL  P+ S Q+L +  P   +    V E+++
Sbjct: 488 LKPTTEIQSYLIENNQAPLKDGI--LAKDFLRRPEVSYQDLLAFVPRDYELPLAVEEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  +   +  ++K  E + IP++ DY+S+  ++ E KEKL  ++P  + QAS+
Sbjct: 546 IQVKYEGYIAKAAQKVDKLKRMENKRIPENIDYASINGIATEAKEKLIKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++L++Y+++  +
Sbjct: 606 ISGVNPADISILMVYVEQGKI 626


>gi|199598241|ref|ZP_03211662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus HN001]
 gi|199590844|gb|EDY98929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus HN001]
          Length = 633

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVEN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYAVFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFASLKDGV--LASDFLKRPEINYQTLEQFLPENPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARINYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|254445039|ref|ZP_05058515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobiae bacterium DG1235]
 gi|198259347|gb|EDY83655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobiae bacterium DG1235]
          Length = 612

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/628 (43%), Positives = 371/628 (59%), Gaps = 39/628 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV G GHAGCEAA  AA++GA T +++    TI +MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVIVCGAGHAGCEAALAAARMGARTLVVSGNIDTIAAMSCNPAIGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD +GIQFR+LN  KGPAV+ PR Q D+++Y L M+  +  QENL + Q  V 
Sbjct: 65  GGEMAVNADVSGIQFRLLNASKGPAVQSPRAQCDKKVYALRMKHVLELQENLSIFQATVT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   +   ++      +      +VV+TTGTFLRG++HIGK K   GRMGD  + +L +S
Sbjct: 125 GLIFKAGKVAGCRTNLDVEFFGKSVVVTTGTFLRGLMHIGKNKNEGGRMGDFSAQTLSSS 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-------ITNR-- 236
           F++   +  RLKTGTP RL G+TI + + E+Q  DER   F F   +       +  R  
Sbjct: 185 FLEAGIELERLKTGTPPRLLGRTIDFSQLEEQKGDERPSLFGFYDTRGEKDLFHVEQRGE 244

Query: 237 ----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                     Q+ C IT T+ +T RI+ EN+  SA+Y G+I+  GPRYCPSIEDK VRF 
Sbjct: 245 RLAGWKPGTDQVSCWITYTSADTQRIVNENLHLSAMYGGEIEGTGPRYCPSIEDKFVRFA 304

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            +  H +FLEPEG NTD  Y NG+ST+LP   Q + +R+I GLE V+++RP YA+EYD+ 
Sbjct: 305 NKTRHMLFLEPEGRNTDEYYVNGLSTSLPFAAQLEMLRSIEGLEAVHLLRPAYAVEYDFA 364

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P +LF  LE+KK+  LF AGQINGT+GYEEAA QGLVAG+N+  K    + +   R D 
Sbjct: 365 PPTQLFSHLESKKVENLFFAGQINGTSGYEEAACQGLVAGVNAVLKVRGEEPMVLKRHDG 424

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL +KG  EPYRMFTSRAEYR+     +A+ R+     K G + + R  R  +
Sbjct: 425 YIGVLIDDLVTKGTREPYRMFTSRAEYRLLFNHGSAELRMLDHASKHGLVSDERLARMKR 484

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
             ++       L+  V    + S  +I  +  GK     E                   R
Sbjct: 485 KKEDVEKWIHWLE--VNRMGHDSWATIVRRGVGKDELPEEL------------------R 524

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
              +  +E++     Y  Y  R+  + +++K  EK  IP DFDYS L  L NE   KL+ 
Sbjct: 525 SLEASTLEQVLYRVKYKGYLERETRQIEKLKDVEKIKIPADFDYSKLKGLRNESVVKLTE 584

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +P  L QAS+I G+ P+ +++L+I ++
Sbjct: 585 TQPATLAQASRISGVNPSDISILMIALR 612


>gi|258646489|ref|ZP_05733958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister invisus DSM 15470]
 gi|260403897|gb|EEW97444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister invisus DSM 15470]
          Length = 626

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 370/620 (59%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARMGCRTLLTTISLDNVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  +Q R+LN  KGPAV   R Q+D+  Y   M+  + + +NLD+ Q +V
Sbjct: 66  LGGEMGIAADATAVQMRMLNRGKGPAVYALRAQSDKGAYHRYMKNVVENTDNLDLKQVQV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      I  + +   R   V+L TGT+L  +I IG      G  G   S  L  
Sbjct: 126 MDIIVEDGKCVGITTELDEEYRAKAVILCTGTYLDSMIIIGDTMYSGGPNGMRSSVGLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   +  R KTGTP+R+D +++  +  E +  D     FSFM+++    +  C +T 
Sbjct: 186 NLKKHGLEILRFKTGTPSRVDRRSLHLEGMELEEGDPENHAFSFMSERKDRNKRNCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II ENI  +  Y+G I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNEKTHDIIRENIMRAPKYAGKIHGIGARYCPSIEDKVVRFADKDRHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F+RTIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLRTIPGFEDVKMMRPAYAIEYDLLDPLQLYPTLEVIKLPGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGLVAGIN+A K    D    +R ++YIG ++DDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLVAGINAALKIQGKDPFILARHEAYIGSLVDDLVTKGADEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +GE R  RF +  ++Y      +++   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGHSIGLVGEERYARFLERKKKYEEAMDYIRTQRFT 485

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
            K   N +  S+          A + L  P+ + + +     CP    F    +E ++I 
Sbjct: 486 PKEEINRALESMGTAPLTTGTGADQILKRPEMTYRKMMETLGCP---SFDEEAVEEMEIT 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    ++    E   +P D DY SL  +S E ++K+  ++P +L QA++I 
Sbjct: 543 VKYEGYIARQEAAVRKAARMENEKLPLDMDYLSLDGISTEARQKMDKIRPLSLGQAARIP 602

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G++PA +++L++Y+K+   K
Sbjct: 603 GVSPADISVLMVYVKQRKGK 622


>gi|258509932|ref|YP_003172683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus GG]
 gi|257149859|emb|CAR88832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG/GidA [Lactobacillus rhamnosus GG]
 gi|259651192|dbj|BAI43354.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactobacillus rhamnosus GG]
          Length = 633

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/620 (43%), Positives = 374/620 (60%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR-QIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T D +  + Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVEN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLEQFLPENPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARINYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 609 SGVNPADVAILSVYIEQGRI 628


>gi|87302071|ref|ZP_01084905.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
 gi|87283639|gb|EAQ75594.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
          Length = 662

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/619 (42%), Positives = 367/619 (59%), Gaps = 17/619 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++++IV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   SETFELIVVGGGHAGCEAALTAARLGISTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATTLQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLHLREA 127

Query: 123 EVAGF-------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            V G              N     I+ +     S+     V+LTTGTFL G I +G   +
Sbjct: 128 MVTGLEVDLEGNGPNQVGNGAVGRITGVRTFFGSVYAAPAVILTTGTFLGGQIWVGNQSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF- 228
            AGR G+  S  L  +     F T RLKTGTPAR+D +++  D+ E+Q +D     FSF 
Sbjct: 188 SAGRAGEQASEGLTEALQALGFHTDRLKTGTPARVDRRSVALDQLEEQPSDAEGRYFSFD 247

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +++  + C +TRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF ++
Sbjct: 248 PAAWVSSEPMACHLTRTTAATHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGLE   ++RP YA+EYDY+  
Sbjct: 308 PSHQIFLEPEGRDTPELYIQGFSTGLPERLQLELLRTLPGLEHCVMLRPAYAVEYDYLPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +  P+L TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYI
Sbjct: 368 TQCLPSLMTKRVRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLLRGQEPVHFPREGSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G +IDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR   F    
Sbjct: 428 GTLIDDLVTKDLHEPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWGLFEAKQ 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDA 525
                 +  L+++ L   +  +     +     +   T  + L    F  ++L  +    
Sbjct: 488 AAIAAEKQRLETVRLKVSDPVAPEAEARSGAPIKGSITLADLLRRSGFHSRDLVDLGLAD 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
               + V E  +I+  Y+ Y  RQ  +  +++ +++R IP   DYS++  LS E +EKL+
Sbjct: 548 ADLPAGVREGAEIDLKYSGYLARQQQQIDQVRKQDQRPIPGGIDYSAIATLSKEAREKLA 607

Query: 586 ILKPFNLLQASKIEGMTPA 604
            ++P NL QAS+I G++PA
Sbjct: 608 AVQPLNLGQASRIPGVSPA 626


>gi|331702697|ref|YP_004399656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus buchneri NRRL B-30929]
 gi|329130040|gb|AEB74593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus buchneri NRRL B-30929]
          Length = 643

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/631 (41%), Positives = 371/631 (58%), Gaps = 15/631 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  QDYDVIVVGAGHAGCEAALAAARMGNKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAV+  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 76  ALGGEMGKNIDKTYIQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTIEKEPNLTLRQGI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +      VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAECYAKAVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
            +     FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF +          Q+ 
Sbjct: 196 GNLEALGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDENYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDK+VRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRDNLDRAPMFTGVIEGVGPRYCPSIEDKVVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q + I +I G+E   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQKMIHSIVGMENAQMMRPGYAIEYDVVAPYQLKPTLETKV 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QGL+AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I +   +R+AK++ +   + +   
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISD---ERYAKFLAKKKAIEAEFD 492

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYE------FLSYPDFSIQNLFSICPDAR-KFSSLV 532
            L       S     F Q+   +   +      FL  P    Q L    P A  K    V
Sbjct: 493 RLNTIRIKPSDEVNQFVQEHGDKPLQDGVLASIFLRRPYVDYQTLMRFIPQAETKPDRHV 552

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  +
Sbjct: 553 IEQIEIQTKYAGYIKKAEQSVEKMKRMEAKKIPDRIDYDAIDGIATEARQKLQKIHPETI 612

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV-KLNE 622
            QAS+I G+ PA + +L +YI++  + KL E
Sbjct: 613 AQASRISGVNPADIAILSVYIQQGKISKLAE 643


>gi|56751692|ref|YP_172393.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Synechococcus elongatus PCC 6301]
 gi|81170584|sp|Q5N1E7|MNMG_SYNP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56686651|dbj|BAD79873.1| glucose inhibited division protein [Synechococcus elongatus PCC
           6301]
          Length = 635

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/617 (42%), Positives = 370/617 (59%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  L  E+DAL
Sbjct: 7   FDVIVIGAGHAGCEAALAAARLGCQTLLLTLNLDRIGWQPCNPAVGGPAKSQLAHEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   +++ +  Q NL + +G V 
Sbjct: 67  GGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVIKQVLEQQPNLRLREGMVT 126

Query: 126 ----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G N E   +  +     S  R   V+LTTGTFL G I +G   +PAGR G+  +  
Sbjct: 127 DLLIGPNDE---VQGVTTYFGSSFRAKAVILTTGTFLGGCIWVGNKSMPAGRAGEFAAVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L  +  +  F+T RLKTGTPAR+D +++ + + E Q  D  +  FSF  +    R Q+ C
Sbjct: 184 LTETLQRLGFETDRLKTGTPARVDKRSVDYSRLEPQPGDPEVRWFSFDPEAWVEREQLPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH++I +N+  + +Y G I + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 244 YLTRTTAETHKLIRDNLYLTPVYGGYIDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q   ++T+PGLE   ++RP YA+EYDY+   +  PTL T+++
Sbjct: 304 DIPELYIQGFSTGLPEDLQLALLQTLPGLEDCVMLRPAYAVEYDYLPATQCLPTLMTRRV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     D I F R  SYIG +IDDL +K +
Sbjct: 364 EGLFSAGQLNGTTGYEEAAAQGIVAGINAARFVQGQDAIVFPREGSYIGTLIDDLCTKDL 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        ++ L  
Sbjct: 424 REPYRVLTSRSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQ 483

Query: 481 LVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +    +I+ +     +   T  + L  P+F   +L +        +    E  +
Sbjct: 484 QRVKEHDPVGQAIAQQTQAPIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  RQ  +  ++  + +R +P D DYS++ ++  E +EKL+  +P  L QAS+
Sbjct: 544 IAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLTLGQASR 603

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LLI+++
Sbjct: 604 IGGVNPADINALLIWLE 620


>gi|319953029|ref|YP_004164296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Cellulophaga algicola DSM 14237]
 gi|319421689|gb|ADV48798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga algicola DSM 14237]
          Length = 622

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/632 (42%), Positives = 386/632 (61%), Gaps = 31/632 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+G GHAGCEAAA AA +G+   L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKEYDVIVVGAGHAGCEAAAAAANMGSKVLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G ++D + IQF++LN  KGPA+  PRTQ DR    E +RLA++       N
Sbjct: 61  EIDALGGYSGIISDKSAIQFKMLNKSKGPAMWSPRTQNDRMVFAEEWRLALE----DTPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D  Q  V+G   E N    +       I+  +VVLT GTFL G+IHIG      GR G+
Sbjct: 117 VDFYQEMVSGLLVENNKAVGVTTSLGIKIKSKSVVLTNGTFLNGLIHIGDKNFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  +    +   F++GR+KTGTP R+DG+++ + K   Q  D     FS+   K    
Sbjct: 177 RAATGITEQLLSLGFESGRMKTGTPPRVDGRSLDYSKMIIQPGDAIPEKFSYSPTKALEH 236

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q +C +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF ++N HQ+F+E
Sbjct: 237 QRDCHMTHTSELVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKNSHQLFVE 296

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG  T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLE
Sbjct: 297 PEGWRTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLE 356

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK +S L+ AGQINGTTGYEEAA+QGL+AGIN+ +K N+ +     R ++YIGV+IDDL 
Sbjct: 357 TKLVSNLYFAGQINGTTGYEEAASQGLMAGINAHQKINEKEDFILKRDEAYIGVLIDDLI 416

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR----------FAK 466
           +KG  EPYRMFTSRAEYR  LR DNAD RLTP+G K+G   E R KR          F +
Sbjct: 417 TKGTEEPYRMFTSRAEYRTLLRQDNADLRLTPMGYKIGLAREDRLKRMEDKLEKSEKFVQ 476

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--- 523
           + ++ + L   +   +  S N +    SFK        ++  S P+ ++ ++ +I     
Sbjct: 477 FFKDTSVLPDQINP-IFESVNSAVVDQSFKM-------FKAFSRPNVTMDHMMTIASVSN 528

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                  +  V+E+ +++  Y+ Y  ++   A ++   E   IP +FDY+ L +LS E +
Sbjct: 529 FVKENDLNREVLEQAEVQVKYSGYIAKEKNNADKLHRLENVKIPANFDYTKLKSLSTEAR 588

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +KL+ ++P  + QAS+I G++P+ +++LL+++
Sbjct: 589 QKLTKIQPVTISQASRISGVSPSDISVLLVFL 620


>gi|167754941|ref|ZP_02427068.1| hypothetical protein CLORAM_00445 [Clostridium ramosum DSM 1402]
 gi|237735331|ref|ZP_04565812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mollicutes bacterium D7]
 gi|167704991|gb|EDS19570.1| hypothetical protein CLORAM_00445 [Clostridium ramosum DSM 1402]
 gi|229381076|gb|EEO31167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. D7]
          Length = 620

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/625 (42%), Positives = 375/625 (60%), Gaps = 15/625 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+GGGHAG EAA   A++   T L+T     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDIIVVGGGHAGIEAALAPARMNQKTVLVTSNFDNVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD   +Q ++LN  KGP V+  R QAD+++Y   MQ  +  QENLD+I+G V 
Sbjct: 62  GGQMPKTADKTYLQMKMLNTAKGPGVQSLRAQADKKVYPRYMQEVLKKQENLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +++ +   I    V+LTTGT+L+  I  G  K  +G      S  L   
Sbjct: 122 DLIVEDNCVKGVILDNGQTIEGRMVILTTGTYLKAEILCGDQKHASGPDQQKESKYLSEK 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
                    RLKTGTP R++  ++ + KT  Q   +  + FS+ T++      Q  C +T
Sbjct: 182 LANLGMRIQRLKTGTPPRVEINSVDYSKTSLQPGTDANLAFSYQTNEFIPIEEQTPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +N+  S++YSG +K  GPRYCPSIEDKIV+F ++  HQIFLEPE    D
Sbjct: 242 YTNEKTHQIIRDNLHRSSMYSGIVKGIGPRYCPSIEDKIVKFSDKPQHQIFLEPESAEMD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST+LP ++Q + IRTIPGLE   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSLPHDVQEEMIRTIPGLENCKILKYAYAIEYDAIDPLQLWPSLETKIIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+  K+   + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLIAGINATLKNQGKEPLILKRDEAYIGVMIDDLVTKGTDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ +R DNAD RL   G  +G + ++  + +   + E       L ++  
Sbjct: 422 YRMLTSRAEYRLLIRHDNADERLMKYGHDVGLVSDQIYQAYLDKMSEIFAEIDRLDTIRF 481

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T K+    + + +  G  R     +A E +  P+ + + +     +A K S    +R+ I
Sbjct: 482 TPKH--EINDALEHFGSARLTEGISAKELIKRPELTYEKILPYV-EAPKLSEEQRKRVTI 538

Query: 539 ESSYAAYTGRQMIEA-KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
              Y  Y  +   +A K++K EEK+ IP D DY  +  L+ E K+KLS ++P  + QAS+
Sbjct: 539 LIKYKGYIDKARRQADKQVKMEEKK-IPADIDYEDISNLALEAKQKLSKIRPLTIGQASR 597

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G+ PA +++LLIY+K+   K NE
Sbjct: 598 ISGINPADISVLLIYLKQ---KYNE 619


>gi|110598308|ref|ZP_01386583.1| glucose inhibited division protein A [Chlorobium ferrooxidans DSM
           13031]
 gi|110340116|gb|EAT58616.1| glucose inhibited division protein A [Chlorobium ferrooxidans DSM
           13031]
          Length = 621

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 367/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA+ G S  LIT   S+I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAALAAARSGCSCLLITTDLSSIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  DA GIQFR+LN  KGPA+  PR QAD+ +Y L M++ I  + N+D++Q  V 
Sbjct: 62  GGEMARAIDANGIQFRMLNRSKGPAMHSPRAQADKAMYSLYMRKVIERETNIDLLQDTVV 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM-GDSPSNSLFN 184
           G  + + +     +    +I     +L  GTFL G+IHIG      GR   + P   L  
Sbjct: 122 GIESHEGVFQGARISSGRVIAGGAAILCCGTFLNGLIHIGMNHYDGGRTTAEPPVRGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
             ++  F  GRLKTGTP R+D +++ + + E Q  D     FSF      NR Q+ C IT
Sbjct: 182 DLLRLGFVAGRLKTGTPPRIDARSVDYSRVESQQGDAEPSAFSFSKSLDRNRRQVSCYIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+ +    S +++G ++  GPRYCPS+EDKI RF ++  H IFLEPEG++T+
Sbjct: 242 KTTPQTHDILKKGFSRSPLFTGKVQGIGPRYCPSVEDKICRFPDKESHHIFLEPEGIDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + +R+IPGL    IIRPGYAIEYDY  P ++  TLETK I  L
Sbjct: 302 EMYVNGFSTSLPEDIQEEGLRSIPGLSNAKIIRPGYAIEYDYFFPYQIKGTLETKLIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++ K+     I   R+++YIGV+IDD+ +K  LEP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASLKARSRPPINLRRSEAYIGVLIDDIITKETLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G +           I++ N L++L  +  L
Sbjct: 422 YRMFTSSAEHRLHLRHDNADVRLVTFGYEAGLVQHETYHLCLSKIEKINHLKALCANTRL 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
             + ++       +     +      L  P  +++ + +     R           + E+
Sbjct: 482 QPEEINRMLAKSGYAHVDVSHHVAALLKRPGITLELILAESEAFRNSVHQITIDRSIYEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R ++ A++I   E   IP  F+Y  +  LSNE KEKL   KP  +  A
Sbjct: 542 VDIDLKYEGYLKRDLLMAEKISRLESLRIPPRFNYDGISGLSNEGKEKLKKHKPETIGVA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L + + +
Sbjct: 602 SRIPGVSPSDISVLTVRLGR 621


>gi|32265512|ref|NP_859544.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter hepaticus ATCC 51449]
 gi|81170547|sp|Q7VK79|MNMG_HELHP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|32261560|gb|AAP76610.1| glucose inhibited division protein A [Helicobacter hepaticus ATCC
           51449]
          Length = 629

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/635 (43%), Positives = 379/635 (59%), Gaps = 24/635 (3%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGGHAG EA+ V+AK+GA T LIT     I   SCNPA+GGLGKGHLV+EIDAL G+
Sbjct: 1   MVIGGGHAGVEASIVSAKMGAKTHLITLLIQNIALASCNPAVGGLGKGHLVKEIDALGGV 60

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           MG + D  GIQFR+LN  KGPAVRG R Q D + Y +  +   L+  NL + Q  V    
Sbjct: 61  MGVITDKCGIQFRILNASKGPAVRGTRAQIDMDRYSIFAKEIALNTPNLTISQESVESLI 120

Query: 129 TEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            E++     I+  +            V+LTTGTFLRG++HIG+ K+  GR G+    +L 
Sbjct: 121 YEQDSKGRYIVKGVTTNIGKTYFAKKVILTTGTFLRGLVHIGETKLQNGRFGEMSPQNLS 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           NS        GRLKTGT AR+DG++I +   E    DE+   FS+ T   +  Q+ C +T
Sbjct: 181 NSLQDMGLTLGRLKTGTCARIDGRSIDFSALEIHNGDEKPPHFSYKTINFSPTQLPCFVT 240

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N   + +++G I+  GPRYCPSIEDK+ RF +++ HQ+FLEP+     
Sbjct: 241 YTNENTHKIIRDNFHRAPLFTGQIEGVGPRYCPSIEDKVNRFADKSRHQLFLEPQTQEAV 300

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG+ST+LP ++Q   I +I GLE  +I R GYAIEYDY+ P EL+ TLETKK + L
Sbjct: 301 EYYINGLSTSLPIDVQEAVIHSIKGLENAHITRYGYAIEYDYVEPTELYHTLETKKCANL 360

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG++AGIN A  S +      +R ++YIGVMIDDL +KG  EP
Sbjct: 361 FLAGQINGTTGYEEAAAQGIMAGIN-ATLSLQNKSFTLARNEAYIGVMIDDLVTKGTKEP 419

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----------KYIQEYNF 473
           YR+FTSRAEYR+ LR DNA  RL     K G I + R  +             Y+Q ++ 
Sbjct: 420 YRVFTSRAEYRLLLREDNAYLRLGTYAYKFGLIDKVRYTQIMADKTHIEHTINYLQNHHI 479

Query: 474 LRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
             S     +L S  L   S  ++     G+       L     ++     I  D    S 
Sbjct: 480 TPSSSNLTMLASLGLPPISDKALLIHIVGREELDCALLR----TLLTHLGIT-DVESMSD 534

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           L IE++ IES Y  Y  +Q  +  +++   +  IP+DF + ++P LS E+ EKL    P 
Sbjct: 535 LAIEQIFIESKYFDYIQKQKQQIGQMRQMLQVEIPRDFIFDNIPGLSLEVIEKLKKFTPK 594

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           +L +A++I G+TPA++++L +YI  +  K ++I++
Sbjct: 595 SLFEANEISGITPASIDVLHLYIHLHHKKKSQILV 629


>gi|283956586|ref|ZP_06374065.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791835|gb|EFC30625.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 619

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/618 (44%), Positives = 368/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q +  
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IHIG+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHIGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSALEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|161508217|ref|YP_001578188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus helveticus DPC 4571]
 gi|205831539|sp|A8YTQ6|MNMG_LACH4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160349206|gb|ABX27880.1| Glucose inhibited division protein [Lactobacillus helveticus DPC
           4571]
          Length = 661

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/614 (43%), Positives = 360/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 QLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNIKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  + V
Sbjct: 430 YRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHEITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             S ++     S  Q+       A  FL  P+  I ++  +  +       V E+++I  
Sbjct: 490 HLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|87123456|ref|ZP_01079307.1| glucose inhibited division protein A [Synechococcus sp. RS9917]
 gi|86169176|gb|EAQ70432.1| glucose inhibited division protein A [Synechococcus sp. RS9917]
          Length = 644

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/624 (42%), Positives = 371/624 (59%), Gaps = 20/624 (3%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           +GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+DAL G++G
Sbjct: 1   MGGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDALGGVIG 60

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
           R+ADA  IQ R+LN  +GPAV   R Q D+  Y   M R +    NL + +  V G   E
Sbjct: 61  RLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLRLLQHTPNLALREAMVTGLEIE 120

Query: 131 KNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            +                 I+ +     S+     VVLT GTFL G I +G   + AGR 
Sbjct: 121 GDPTGGGDDWDPRQGAAARITGVRTYFGSVYGARAVVLTAGTFLGGRIWVGHQSMAAGRA 180

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKI 233
           G+  +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     +
Sbjct: 181 GEQAAEGLTEALQQLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWV 240

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQI
Sbjct: 241 SGEQMSCHITRTTAATHQLIQDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQI 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++R  Y+++YDY+   +L P
Sbjct: 301 FLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQCVMLRAAYSVDYDYLPATQLLP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    + + F R  SYIG MID
Sbjct: 361 SLETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQEPVHFPREGSYIGTMID 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL S+ + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR   F + +     
Sbjct: 421 DLVSQDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWHLFQEKLAALEG 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSS 530
               L+   L   +  ++++  +     +   T  + L  P     +L            
Sbjct: 481 ETQRLERQRLKVSDPVASAVEAETGAPIKGSITLADLLRRPGVHSADLVRHGLADADLPL 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E  +I+  Y+ Y  RQ  +  ++K + +R +P D DY+++  LS E +EKL+ ++P 
Sbjct: 541 PVREGAEIDIKYSGYLQRQQQQIDQVKRQGQRRLPADLDYTNIGTLSREAREKLAAVRPV 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
           +L QAS+I G++ A L  LL++++
Sbjct: 601 SLGQASQIPGVSQADLTALLVWLE 624


>gi|86152857|ref|ZP_01071062.1| glucose-inhibited division protein A [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843742|gb|EAQ60952.1| glucose-inhibited division protein A [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 619

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVEGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHYKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|255994564|ref|ZP_05427699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium saphenum ATCC 49989]
 gi|255993277|gb|EEU03366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium saphenum ATCC 49989]
          Length = 641

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 369/621 (59%), Gaps = 12/621 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV VIG GHAGCEA   AA+LG  T +       +  M+CNP+IGG GKG LVREIDAL
Sbjct: 19  FDVAVIGAGHAGCEAGLAAARLGLKTVVFASTLEAVAMMACNPSIGGTGKGQLVREIDAL 78

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
            G MG   DA  +Q ++LN  KGPA++  R QAD++ Y   M+  +  +ENL++ Q E+ 
Sbjct: 79  GGEMGVNIDATMVQSKMLNTGKGPAIQSLRAQADKKEYHARMKSVLEKEENLELKQAEIV 138

Query: 125 ---AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              A +   K  +++++ +  +      V+L TGTFL   I IG  +  +G  G +  N 
Sbjct: 139 TIEAAYTEGKKRVTAVITKTGARYEAKAVILATGTFLSSKIFIGHSEYSSGPDGMAACNE 198

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S         R KTGTPAR    T  +   +++  D+ ++PFSF+T  I   Q+ C 
Sbjct: 199 LSQSIRTLGLKLRRFKTGTPARALKNTFDYSLMKREEGDQPVVPFSFLTKNINIDQLPCY 258

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II +N   SA++SG I+  GPRYCPSIEDK+ RF ++  HQ+F+EPEG N
Sbjct: 259 LTYTNEKTHEIIRDNFNRSAMFSGKIEGAGPRYCPSIEDKVKRFADKKRHQLFIEPEGRN 318

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LPE++Q  F RTIPGLE + I RP YAIEYD I+  ELF TLETK++ 
Sbjct: 319 TEEMYIQGMSSSLPEDVQTLFYRTIPGLENIEISRPAYAIEYDCIDSLELFHTLETKEVG 378

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQING++GYEEA AQGL+AGIN+  K          R ++YIGV+IDDL +KG  
Sbjct: 379 NLYCAGQINGSSGYEEAGAQGLIAGINAGLKLRNKPPFVLGRDEAYIGVLIDDLVTKGTN 438

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT  G ++G   + R ++  +  Q      + LK  
Sbjct: 439 EPYRMMTSRAEYRLLLRQDNADLRLTQRGYEIGLASDERLEKMKRKRQGIEDELARLKKH 498

Query: 482 VLTSKNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             + + ++      +Q G     K  + YE L  P  S + L ++  +       VI ++
Sbjct: 499 KASPEEVNDI---LEQKGTGAISKKTSLYELLKRPQLSYEELGAVDGERPALDDGVITQV 555

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +Q+ +    K  E + +  + DY S+  L  E  EKL+ +KP ++  AS
Sbjct: 556 EISCKYEGYINKQLEQVDRFKQLEDKALSANLDYLSIKGLRLEAAEKLAAIKPASVGAAS 615

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++PA + +LL+Y+++ T
Sbjct: 616 RISGVSPADIGVLLVYLERMT 636


>gi|322378813|ref|ZP_08053239.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS1]
 gi|321148737|gb|EFX43211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS1]
          Length = 624

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/616 (44%), Positives = 367/616 (59%), Gaps = 7/616 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EA+ VAAK+GA   L+T     IG  SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 3   DIVVVGGGHAGIEASIVAAKMGAKVHLLTLLIENIGLASCNPAIGGLGKGHLVKEIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG ++D +G+QFR+LN  KGPAVRG R Q D +LYR   +  +L+  NL V Q  V G
Sbjct: 63  GVMGILSDLSGLQFRILNASKGPAVRGTRAQIDMDLYRQNARNLVLNTSNLSVSQEMVEG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +        + S V+LTTGTFL+G++HIG      GR G+S S  L    
Sbjct: 123 LLIENGAVVGVKSTLGKEYKASKVILTTGTFLQGLVHIGTHTSQNGRFGESASIELAKHL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                + GRLKTGT  RL G +I + + E  F D     FS  T      Q+ C IT TN
Sbjct: 183 KTLGLEIGRLKTGTCPRLAGNSIDFTELEAHFGDFPPPKFSHKTKDFNPIQLPCFITYTN 242

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I +N   + ++SG I+  GPRYCPSIEDKI RF ++  HQ+FLEP+  +    Y
Sbjct: 243 SKTHALIEQNFHLAPMFSGQIEGVGPRYCPSIEDKIYRFKDKERHQLFLEPQTKSGSEYY 302

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP  +Q Q I +I GLE  +I R GYAIEYD+I P  L  +LE+K+I  L+LA
Sbjct: 303 VNGLSTSLPFHLQEQVIHSIKGLEHAHITRYGYAIEYDFIQPTGLEYSLESKQIKNLYLA 362

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAAAQGL+AGIN+         +   R ++YIGVMIDDL SKG  EPYRM
Sbjct: 363 GQINGTTGYEEAAAQGLLAGINACLTLQNKPPLILRRDEAYIGVMIDDLVSKGTQEPYRM 422

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLVLT 484
           FTSRAEYR+ LR DNA  RL      LG + E+   +  K  Q+    ++L  LK+   T
Sbjct: 423 FTSRAEYRLLLREDNARWRLCKYAYALGLMSEKEHAKLQK--QQDQITKALENLKNTHFT 480

Query: 485 -SKNLSSTSISFKQDG-KTRTAYEFLSYPD-FSIQNLFSICPDARKFSSLVIERLQIESS 541
            SK          Q+G   +    FL+  D  S++ L S+    +     V+E+++I   
Sbjct: 481 PSKETLQKLQDLGQEGINDKCNGVFLAGRDSCSVEILSSLFSFLQNLEPEVLEQVKIACK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y +Y  +Q      ++   +  IP DF +  +P L  E  EKL   +P +L +AS+I G+
Sbjct: 541 YHSYIEKQSASIARMEQMLQNKIPSDFVFHKIPGLGLEAIEKLERFRPKSLFEASQISGI 600

Query: 602 TPAALNLLLIYIKKNT 617
           TP+ L +L +Y+  +T
Sbjct: 601 TPSNLEVLQLYLHLHT 616


>gi|330997306|ref|ZP_08321159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571101|gb|EGG52808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paraprevotella xylaniphila YIT 11841]
          Length = 623

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/624 (42%), Positives = 370/624 (59%), Gaps = 19/624 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAAAASANMGAQTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q +V 
Sbjct: 65  GGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDQVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +    +  IR   V+LT GTFL G++HIG  ++P GR+ +  S  L  S
Sbjct: 125 ELLVEHGEVTGVKTYFDVTIRARCVILTAGTFLNGLMHIGHTQLPGGRVAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GR+KTGTP R+DG+++ +++ E Q  +     FSFM      +Q+ C    T
Sbjct: 185 IACHGINYGRMKTGTPVRIDGRSVHFEEMEIQEGEHDYHKFSFMGRDRQLKQLPCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +Y+G I+S GPRYCPSIE K+V F ER  HQ+FLEPEG +T   
Sbjct: 245 NPEVHEVLRSGLPDSPLYNGQIQSIGPRYCPSIETKLVTFPERGQHQLFLEPEGESTQEY 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP  IQ + ++ IP    + I RPGYAIEYDY +P +L+ TLE+K + GLF+
Sbjct: 305 YLNGFSSSLPLHIQIEALKKIPAFRDLAIYRPGYAIEYDYFDPTQLYHTLESKILPGLFM 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R +SYIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIVAGINAALKCSGGEPFIMHRDESYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    ++G     R   +    +    + S  K   L  
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERSYQIGLATRERYDHWLSKKEAVEHIVSFCKDFSLKP 484

Query: 486 -------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL------ 531
                  + L +T + +         +E ++ P  +++N+   I P      +L      
Sbjct: 485 ALINPGLEALGTTPLKYGC-----KLFELINRPQITVKNIAEHITPLKALLDTLTDRRDE 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  ++   Y  Y  R+ I A +++  E   I   FDY S+ +LS E ++KL  + P  
Sbjct: 540 IIEAAEVLIKYDGYIARERIIADKMQRLESIKIKGRFDYKSMISLSTEARQKLEKINPET 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QA +I G++P+ +N+LL+ + +
Sbjct: 600 LAQAGRIPGVSPSDINVLLVLLGR 623


>gi|81429489|ref|YP_396490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123563598|sp|Q38UF0|MNMG_LACSS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78611132|emb|CAI56185.1| Cell division protein GidA [Lactobacillus sakei subsp. sakei 23K]
          Length = 630

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/620 (43%), Positives = 368/620 (59%), Gaps = 9/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGRETLLLTINLDMVAFMPCNPSLGGPAKGIVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I + E+L + QG   
Sbjct: 69  GGQMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRTMKRTIETTEHLTLRQGIAE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   IV    +     +V+LT GT  RG I IG+L   +G     PS  L  S
Sbjct: 129 SLIVEDGVCKGIVTNTGARYSADSVILTAGTASRGKIIIGELTYSSGPNNSIPSIKLSES 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                F   R KTGTP R+DG TI + KTE+Q  D+    FSF T        Q+ C +T
Sbjct: 189 LEDNGFVLTRFKTGTPPRVDGTTIDFSKTEEQPGDKEPNHFSFETPDSAYLKDQLSCWMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH++I +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T+
Sbjct: 249 YTNDTTHQVIRDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKPRHQIFLEPEGRETE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y    ST++PEEIQH+ I +I GLE   ++RPGYAIEYD + P +L PTLETK +  L
Sbjct: 309 EYYVGDFSTSMPEEIQHKMIHSIEGLENAQMMRPGYAIEYDVVEPWQLKPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ+NGT+GYEEAA QGL+AGIN+A K    D     R+++YIGV+IDDL +KG  EP
Sbjct: 369 YTAGQMNGTSGYEEAAGQGLMAGINAALKQTGRDPFILDRSEAYIGVLIDDLVTKGTKEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFAKYIQEYNFLRSLL 478
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R      K+ A   +     +  L
Sbjct: 429 YRLLTSRAEYRLMLRHDNADLRLTEKGHELGLINDDRFDSYEVKKAAVEAELARLEKIRL 488

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K        L++   +  +DG    A +FL  P+    +L    P      + V+E+++I
Sbjct: 489 KPTPEIQAFLAAKGEAPLKDGV--LASDFLKRPEVKYADLIQFIPAVEGIDNRVVEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++  +  ++K  E + IP + DY ++  L+ E ++KL  ++P  L QAS+I
Sbjct: 547 QVKYAGYIDKEKAKIAKLKRMEAKKIPANIDYDAIEGLATEGRQKLQKIQPETLAQASRI 606

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA + +L +YI++  +
Sbjct: 607 GGVNPADIGILSVYIQQGKI 626


>gi|86151119|ref|ZP_01069335.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124654|ref|YP_004066658.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842289|gb|EAQ59535.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018376|gb|ADT66469.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 619

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|57238060|ref|YP_179309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni RM1221]
 gi|73621003|sp|Q5HTS6|MNMG_CAMJR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57166864|gb|AAW35643.1| glucose inhibited division protein A [Campylobacter jejuni RM1221]
 gi|315058620|gb|ADT72949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 619

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/624 (43%), Positives = 372/624 (59%), Gaps = 15/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+TPAAL++L IYIK    K+
Sbjct: 596 QISGITPAALDILQIYIKMQKKKV 619


>gi|23009716|ref|ZP_00050662.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Magnetospirillum magnetotacticum MS-1]
          Length = 389

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/379 (64%), Positives = 295/379 (77%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQR +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYAAAMQRAVAETPGLTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +  ++  ++ D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 EDLVVAEGRVAGAILTDGRTLTAAAVVITTGTFLRGLIHIGERQIPAGRVGEGPAVGLAQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTPARLDG+TI W   E Q ADE  +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPARLDGRTIDWASLEMQHADEDPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQATHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I +IPGLE+  I+RPGYAIEYDY++P+EL  TL+ K++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIASIPGLERTRILRPGYAIEYDYVDPRELDATLQAKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGL 383
           LAGQINGTTGYEEAA QGL
Sbjct: 367 LAGQINGTTGYEEAAGQGL 385


>gi|328463991|gb|EGF35489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus helveticus MTCC 5463]
          Length = 661

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/614 (43%), Positives = 360/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 QLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNIKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  + V
Sbjct: 430 YRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHEITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             S ++     S  Q+       A  FL  P+  I ++  +  +       V E+++I  
Sbjct: 490 HLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|291561653|emb|CBL40452.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SS3/4]
          Length = 649

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/653 (40%), Positives = 384/653 (58%), Gaps = 48/653 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP +GG  KGHLVR
Sbjct: 3   VVEETYDIVVVGAGHAGCEAALAAARLGFETIMFTVSVDSIALMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y  +M+R + + ++L + 
Sbjct: 63  ELDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQEYTRSMRRVLENTDHLTIR 122

Query: 121 QGEVAGFNTE-----------------------KNIISSIVMQDNSMIRCSTVVLTTGTF 157
           Q EVA   TE                       K  I  +     ++ +C  VVL TG +
Sbjct: 123 QAEVAEILTEEIPGEYGTFQEEHEGHQESGYPVKKRIVGVKTYSGAVYKCRAVVLATGVY 182

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
           LR     G +  P G  G   +N L +S      +  R KTGTPAR D ++I + K E+Q
Sbjct: 183 LRARCIYGNVSNPTGPNGLQAANHLTDSLKANGIEMYRFKTGTPARADKRSIDFSKMEEQ 242

Query: 218 FADERLIPFSFMTD--KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           F D+R++PFSF TD   +   QI C +T TN +TH II  N+  S ++SG I+  GPRYC
Sbjct: 243 FGDKRVVPFSFSTDPESVQKEQISCWLTYTNEKTHEIIRNNLDRSPLFSGAIEGTGPRYC 302

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDK+V+F ++  HQ+F+EPEGL T+ +Y  G+S++LPE++Q+   RT+PGLE V I+
Sbjct: 303 PSIEDKVVKFPDKGRHQVFVEPEGLYTNEMYLGGMSSSLPEDVQYAMYRTVPGLENVKIV 362

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R  YAIEYD INP++L  +LE K I GLF  GQ NG++GYEEAA QG +AG+N+ARK  +
Sbjct: 363 RNAYAIEYDCINPRQLKASLEFKNIDGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQE 422

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
              +   R+ +YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RL  IG ++G 
Sbjct: 423 KSAVVLDRSQAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLRGIGHEIGL 482

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS--------FKQDGKT-----R 502
           + E          ++Y ++    K++    K L   ++          ++ G T      
Sbjct: 483 VSE----------EQYEYVLWKEKAIEEEIKRLEKATVGANEKVQEFLEKHGSTSLKSGS 532

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
           T  E +  P+ + + L  +     +  + V E++ I   Y  Y  RQ  +  + K  E R
Sbjct: 533 TLAELIKRPELNYEMLAELDEKRPELPADVREQVDINLKYDGYIRRQKQQVAQFKKLEGR 592

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            IP D DY+++ +L  E  +KL++ KP N+ QAS+I G++PA +++L++++++
Sbjct: 593 KIPVDLDYTTVGSLRREAVQKLNLYKPENIGQASRISGVSPADISVLMVHLEQ 645


>gi|260101883|ref|ZP_05752120.1| glucose-inhibited division protein A [Lactobacillus helveticus DSM
           20075]
 gi|260084311|gb|EEW68431.1| glucose-inhibited division protein A [Lactobacillus helveticus DSM
           20075]
          Length = 661

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/614 (43%), Positives = 360/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 QLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNIKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  + V
Sbjct: 430 YRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKEKLHEITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             S ++     S  Q+       A  FL  P+  I ++  +  +       V E+++I  
Sbjct: 490 HLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|88596189|ref|ZP_01099426.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|88191030|gb|EAQ95002.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 619

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P      +  +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFEIMDNYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|121613192|ref|YP_001000863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005775|ref|ZP_02271533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|218562800|ref|YP_002344579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|21263699|sp|Q9PNA7|MNMG_CAMJE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222922|sp|A1W0H2|MNMG_CAMJJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|87249308|gb|EAQ72269.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360506|emb|CAL35303.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315927247|gb|EFV06592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 619

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVEGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|295425820|ref|ZP_06818501.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064513|gb|EFG55440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylolyticus DSM 11664]
          Length = 631

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/614 (42%), Positives = 361/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGCEAALASAHMGLKTLVVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 69  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDVIENTPNLTLRQAIVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L  +
Sbjct: 129 QLVVKDGVCRGVITNTGAEYHAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIKLSEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++ AD+    FS+ T        Q+ C +T
Sbjct: 189 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPADKIPRHFSYETSDADYLKDQVSCWMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  S ++SGDI   GPRYCPSIE K+VRF ++N HQ+FLEPEG +T 
Sbjct: 249 YTNPTTHKIIRDNLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKNRHQLFLEPEGRHTK 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEE+Q + + T+ GLE   ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EVYVGDFSTSMPEEVQLKMLHTVAGLEHAEMMRPGYAIEYDVIEPWQLKHTLETKNIKNL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A ++         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALRAKGKPGFTLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLTP G KLG I ++R   F +  +E    +  L ++ +
Sbjct: 429 YRLLTSRAEYRLILRHDNADLRLTPYGHKLGLISDKRYAAFEEKKKEIAAAKEKLATITI 488

Query: 484 TSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              +     +    + K     +   FL  P   I ++  +  +       V E+++I  
Sbjct: 489 HPTDEVQEYLQNIGEDKLSAGLKADIFLRRPRVKIDDIEKLTGEKIADDRYVKEQVEINI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++ +    +  +E + IP D DY ++  L+ E ++K   ++P  L QA +I G
Sbjct: 549 KYAGYIKKEQVRIDRLHRQEAKKIPADIDYGAIEGLATEARQKFEKIRPETLAQAERISG 608

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 609 VNPADLAILSVYIQ 622


>gi|225028845|ref|ZP_03718037.1| hypothetical protein EUBHAL_03132 [Eubacterium hallii DSM 3353]
 gi|224953841|gb|EEG35050.1| hypothetical protein EUBHAL_03132 [Eubacterium hallii DSM 3353]
          Length = 627

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 29/621 (4%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA+LG  T + T   +++  M CNP IGG  KGHLV+EIDAL G MG+
Sbjct: 14  GAGHAGCEAALAAARLGCETIIFTVSMNSVALMPCNPNIGGSSKGHLVKEIDALGGEMGK 73

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
             D   IQ ++LN  KGPAV   R QAD++ Y + M+  + + ++L + Q EV     E 
Sbjct: 74  NIDKTYIQSKMLNKSKGPAVHSLRAQADKDAYSMTMRYTLQNTDHLTLRQAEVTELIVED 133

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
            +I  +     ++    TVVL TGT+L+     G++    G  G   +N L  S      
Sbjct: 134 GVIKGVKTFSGAIYHAKTVVLATGTYLKARCLYGEVVNYTGPNGLQAANYLSQSLKDNGV 193

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLET 249
           +  R KTGTPAR+D +++ +D  E+QF DE+++PFSF    + I   QI C +T TN ET
Sbjct: 194 ELYRFKTGTPARIDKRSVNFDVMEEQFGDEKIVPFSFTNKEEDIKREQISCWLTYTNEET 253

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H+II +N+  S IY+G I+  GPRYCPSIEDK+VRF +R  HQ+F+EPEG  T+ +Y  G
Sbjct: 254 HKIIRDNLDRSPIYAGVIEGTGPRYCPSIEDKVVRFADRKRHQLFIEPEGEFTNEMYVGG 313

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           +S++LPE++Q+   RT+ GLE V IIR  YAIEYD INP +L  +LE + I GLF  GQ 
Sbjct: 314 MSSSLPEDVQYAMYRTVKGLENVKIIRNAYAIEYDCINPNQLKLSLEFRNIQGLFSGGQF 373

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NG++GYEEAA QGL+AGIN+ARK    D +   R+ +YIGV+IDDL +K   EPYRM TS
Sbjct: 374 NGSSGYEEAACQGLIAGINAARKCLGKDPVILDRSQAYIGVLIDDLVTKENHEPYRMMTS 433

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-------AKYIQEYNF--------L 474
           RAEYR+ LR DNAD RLTPIG ++G I + R  +F        K I+            +
Sbjct: 434 RAEYRLLLRQDNADMRLTPIGHEIGLIDDERYDKFLLKKEQIEKEIERLKHVNIGANKTV 493

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           + LL+SL  T  N  S            T  E +  P+ + + L  I PD       V E
Sbjct: 494 QELLESLGSTKLNSGS------------TLEELIKRPELNYECLAPIDPDREPLDDDVAE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ+ + ++ K  E +LIP   +Y  +  L  E  +KL  + P ++ Q
Sbjct: 542 QININIKYEGYIKRQLQQVEQFKKMENKLIPDTINYDEVHNLRTEAVQKLKAVHPHSVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++P+ +++L+IY+++
Sbjct: 602 ASRISGVSPSDISVLMIYMEQ 622


>gi|328958784|ref|YP_004376170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Carnobacterium sp. 17-4]
 gi|328675108|gb|AEB31154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Carnobacterium sp. 17-4]
          Length = 631

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/621 (42%), Positives = 381/621 (61%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  AA++G+ T LIT     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NFDVIVVGAGHAGSEAALAAARMGSHTLLITINLDMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ +Y   M++ I   ENL + QG  
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFMYANEMKKTIEETENLVLRQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   I+    ++ R   V+LT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 DELIIEDGICKGIITNTGAIYRSKAVILTAGTSSRGQIIIGELKYSSGPNNSQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           S ++  F+  R KTGTP R+   TI +  TE+Q  D++   FS+ T   +    Q+ C +
Sbjct: 188 SLLENGFELNRFKTGTPPRVKSSTIDYSVTEEQPGDKKANHFSYETPNSSYLKDQLSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+ I +N+  + +++G ++  G RYCPSIEDK+VRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNESTHQKIQDNLHRAPMFTGIVEGVGARYCPSIEDKVVRFSDKPRHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L P+LETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQQDIIHSIEGLENAEMMRTGYAIEYDVVTPHQLRPSLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AG+N+A K    +     R++ YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGMNAALKVQGKEPFVMKRSEGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSL- 477
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F    A++  E + L S+ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADFRLTEIGHQIGLVTKERYDTFVAKKAQFEGEIDRLGSIR 487

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           LK        L+  + +  +DG    A +FL  P+ S Q+L +  P   +    V E+++
Sbjct: 488 LKPTAEIQTYLTENNQAPLKDGI--LAKDFLRRPEVSYQDLLAFVPRDYELPLAVEEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  +   +  ++K  E + IP++ DY+++  ++ E KEKL  ++P  + QAS+
Sbjct: 546 IQVKYEGYIAKASQKVDKLKRMENKRIPENIDYAAINGIATEAKEKLIKIQPETIAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++L++Y+++  +
Sbjct: 606 ISGVNPADISILMVYVEQGKI 626


>gi|167518690|ref|XP_001743685.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777647|gb|EDQ91263.1| predicted protein [Monosiga brevicollis MX1]
          Length = 651

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/611 (45%), Positives = 379/611 (62%), Gaps = 14/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA AA+ GA TAL+T K  TIG MSCNP+ GG+GKG L+RE+DAL
Sbjct: 44  YDVVVIGGGHAGCEAAAAAARTGARTALVTQKLETIGEMSCNPSFGGVGKGILLREVDAL 103

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+   + D AGI FRVLN  KGPAV GPR Q DR +YR  MQ+ + SQ NLD+I   V 
Sbjct: 104 GGVAPTICDRAGIHFRVLNRSKGPAVWGPRAQIDRSIYRSEMQQHMASQPNLDLIAAAVE 163

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  + ++ + + +  +I    VV+TTGTFLRGVI+IG    PAGR G+ PS  L  
Sbjct: 164 DITVNGDHQVTGVALGNGQIIGTRAVVVTTGTFLRGVINIGAYFTPAGRKGEGPSVGLAQ 223

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +   F F  GRL+TGTP R+   T+ +D   +Q +D    PFS++ +++   +  I+C +
Sbjct: 224 TLETFGFKLGRLRTGTPPRIKKSTVCFDGLLEQPSDYPATPFSYLNERVALEDSFIQCHL 283

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN   H+++ + +  +     D  + GPRYCPSIE K       N HQ++LEPEGL++
Sbjct: 284 THTNSAAHQLVHDTLHENNHVRQD--ALGPRYCPSIESKA------NRHQVWLEPEGLDS 335

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           DV+YPNGIS  +PEE Q +F+R+I GLE   I + GY + YD+++P++L  TLETK I  
Sbjct: 336 DVIYPNGISMTMPEEAQLRFVRSIAGLENAQITQLGYGVSYDFVDPRQLHRTLETKMIHS 395

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAA+QG++AGIN+A K          RT +YIGV+IDDL +KGVLE
Sbjct: 396 LFLAGQINGTTGYEEAASQGIIAGINAALKVRGEPSFTVDRTQAYIGVLIDDLVTKGVLE 455

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G   G + E R + F +  +E   L  LL+S+ 
Sbjct: 456 PYRMFTSRAEYRLSLRSDNADTRLTALGHACGAVDEPRFQHFCQQQKELAELTQLLESVE 515

Query: 483 LTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           LT    +S            K  +    +++   S      + P  R F+  ++ER++IE
Sbjct: 516 LTPHEWNSGGWYNSLRCGLLKPCSVASMMAFGFVSDSTAADLVPALRSFNPRLVERVKIE 575

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA    RQ   A+  + +    IP  F +  + +L  E  E+L    P  +  A++I+
Sbjct: 576 AMYAHMMNRQRASAESYRRQASLEIPPGFAFEKVHSLPLEALERLREHAPRTIGDAAQIQ 635

Query: 600 GMTPAALNLLL 610
           G+TP AL  L+
Sbjct: 636 GITPDALARLV 646


>gi|293399749|ref|ZP_06643895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306149|gb|EFE47392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 624

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/614 (41%), Positives = 372/614 (60%), Gaps = 7/614 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L   T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLQKETILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ+ +L+QE+L+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLAYKAYMQKVLLAQEHLEVREMCVEK 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E  ++  ++  D  M  C  +++TTGTF+   I +G    P+G  G+  +N+L  S 
Sbjct: 123 VIAEDGVVKGVLQADGHMEECKALIMTTGTFMSSNILVGHTSTPSGPDGEPTTNNLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGITR 244
                 T RLKTGTPAR+   +I + KTE Q   +  + FS  T  I     Q  C +T 
Sbjct: 183 RDLGIRTFRLKTGTPARVLTSSIDFSKTEVQPGTDAFLCFSHETTNIRPFKEQALCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHRII EN++ SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TSPETHRIINENLERSAMYSGLVKGVGPRYCPSIEDKLVRFADKQRHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++PGLE   I +  YAIEYD I+P +  PTLE K+I+ L+
Sbjct: 303 TYVQGFSTSMPHDVQEAMLHSLPGLENCVIKKYAYAIEYDAIDPLQCKPTLENKRIANLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+  K +  +     R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLLAGINAVLKLDGKEPFILRRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLTP G  +G I + R + F    Q+       L ++  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADLRLTPYGHTIGLISDARYENFKGKEQQIIDCLEYLDTVRFT 482

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K+  +T    + ++   +  +A   L  P  +++ L       + F+  + ++++IE  
Sbjct: 483 PKSTVNTYMQELDYEPLKEGISAKTLLKRPKVTMEGLAPYL--EKTFAPAIAQQVEIEIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   +A  ++  +   +P+  DY  +  LS E ++KL+ ++P  + QAS+I G+
Sbjct: 541 YEGYIQKAKRDAAHLRQMDAVRLPEHIDYQQIQHLSLEARQKLNEVQPMTMGQASRISGV 600

Query: 602 TPAALNLLLIYIKK 615
            PA + +L +Y+++
Sbjct: 601 NPADIAVLAVYLEQ 614


>gi|302380965|ref|ZP_07269426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311186|gb|EFK93206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ACS-171-V-Col3]
          Length = 627

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/616 (42%), Positives = 372/616 (60%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E+DAL
Sbjct: 10  YDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKEVDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+ EV 
Sbjct: 70  GGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIEAEVV 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  L +S
Sbjct: 130 DIGVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKKLSDS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
             K   +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  C +T
Sbjct: 190 LKKLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEHCYLT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+FLEPEGL+T 
Sbjct: 250 YTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFLEPEGLSTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +I  L
Sbjct: 310 EMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLEIKNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG  EP
Sbjct: 370 FFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LKS+++
Sbjct: 430 YRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLKSIMV 489

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSY---PDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    ++  +      + +T    L     P+ +         DA +       RLQ+E+
Sbjct: 490 TPTEETNEKLRNLGSSELKTGITLLDLIKRPELTYDKTEEF--DAERPELPRYLRLQVET 547

Query: 541 --SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS+I
Sbjct: 548 HIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G++P+ +N+LLIY++
Sbjct: 608 SGVSPSDINVLLIYME 623


>gi|157415452|ref|YP_001482708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047158|sp|A8FMP4|MNMG_CAMJ8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157386416|gb|ABV52731.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 619

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSKNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFEDAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P      +  +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDNYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|302393074|ref|YP_003828894.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
 gi|302205151|gb|ADL13829.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
          Length = 625

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 376/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEAA  AA++   T L+T     I  M CNP+IGG  KGH+VREID
Sbjct: 2   KEYDVIVIGAGHAGCEAALAAARMECKTLLLTLNVDHIALMPCNPSIGGPAKGHIVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + I  ++LN  KGPAV   R QAD+ +Y+L M + +  Q++LD+ Q  
Sbjct: 62  ALGGQMAENIDKSYINIQLLNTSKGPAVHALRAQADKHIYQLEMTKTLQKQDDLDLKQSV 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   ++ +        +   +VLTTGT L G + IG +K   GR G+  +  L 
Sbjct: 122 VTELTADGQSVTGVKTITGMEYQADKIVLTTGTSLDGKVIIGDVKYVGGRQGEFAAVELS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +S  +      R +T TP R+   ++ + K   Q   E  + FSF   +I   Q  C +T
Sbjct: 182 DSLKELGLTLERFQTATPPRVHRDSMNFSKMTAQPGSEEPLQFSFSKPRIEREQTPCWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T +II E I+ S + +G I+  GPRYCPSI+ KI+RF ++  HQ+F+EPEGLNT 
Sbjct: 242 YTTDDTKQIIKEKIEKSPLSTGIIEGEGPRYCPSIDRKIMRFPDKTSHQVFIEPEGLNTK 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG++TA+PEE Q   +R++PGLE+  I+RP YA+EYDY+ P +L PTLETK+++GL
Sbjct: 302 EMYVNGLTTAMPEEDQVDILRSVPGLEEAEIMRPAYAVEYDYLPPTQLRPTLETKEVNGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+AR     + I   R+++YIGV+IDDL ++G  EP
Sbjct: 362 YTAGQINGTSGYEEAAGQGLMAGINAARDLQNKEPIILKRSEAYIGVLIDDLITEGTDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLTP+G ++G + E    R     ++    +  L+S+ +
Sbjct: 422 YRMLTSRAEYRLVLRHDNADLRLTPVGYEIGLVEEEVYNRVKDKEEKLEEGQDYLESIQI 481

Query: 484 T-SKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +K +      F+  G  K  +    L  P+    +L        +F   + E+++IE 
Sbjct: 482 NPTKEVRQKLKEFESGGLKKPVSLATLLKRPELEYDDLNLFDDQLPEFDEHIKEQIEIEV 541

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  + K+ +  E++LIP+D DY  L  L  E +EKL+ +KP +L QAS+I G
Sbjct: 542 KYEGYIKRQKQQIKKFQQMEEKLIPEDIDYHQLDNLRTEAREKLAEIKPVSLGQASRISG 601

Query: 601 MTPAALNLLLIYIKK 615
           ++PA +++L+IY+++
Sbjct: 602 VSPADISVLMIYLEE 616


>gi|41058553|gb|AAR99257.1| glucose-inhibited division protein A [Candidatus Blochmannia
           laevigatus]
          Length = 590

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 274/585 (46%), Positives = 361/585 (61%), Gaps = 15/585 (2%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QAD+ 
Sbjct: 1   GQMSCNPAVGGVGKGHLVKEIDAMGGSMACAIDQSGIQFRVLNSSKGAAVRATRAQADKI 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRG 160
           LYR  ++  +  Q+ L VIQ  V      +N I  +V     M  R ++VVLTTGTFL G
Sbjct: 61  LYRQVIRNILEYQKFLLVIQASVEDLIVSRNKIVGVVTPKLGMKFRGTSVVLTTGTFLNG 120

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
            IHIG      GR GD+ S+SL +  +K      GRLKTGT  R+  K I +D    Q++
Sbjct: 121 KIHIGMNNFRGGRSGDAESSSLLSERLKELSLKVGRLKTGTSPRVHAKGINFDALRAQYS 180

Query: 220 DERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
           D+ +  FSF+ + K    Q+ C IT TN +TH I+  N+  S +Y+G IK   PRYCPSI
Sbjct: 181 DDPVPVFSFIGSTKQHPTQVPCYITHTNNKTHEIVRSNLHQSPMYTGLIKGISPRYCPSI 240

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           EDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   IIRPG
Sbjct: 241 EDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQIQMIKSIQGLENAYIIRPG 300

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   + 
Sbjct: 301 YAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKEG 360

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
               R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I E
Sbjct: 361 WYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLIDE 420

Query: 459 RRQKRFAKYIQEYNFLRSLLKSL--------VLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
            R K F    +     R  L++         +    N     +  + +G        ++Y
Sbjct: 421 LRWKVFCCKKENIEKERQRLRNTYIFPYSADIAQLNNFLKAPLIHEANGXDLLRRXEINY 480

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
              S  + F      R+    V E+++I+  Y  Y   Q  E +   + E  L+P D D+
Sbjct: 481 XXLSQLSTFGSSVLDRQ----VFEQIEIQIKYEGYIRHQQEEIERHIYNENTLLPTDIDF 536

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 537 NIVSGLSKEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKK 581


>gi|284049396|ref|YP_003399735.1| glucose inhibited division protein A [Acidaminococcus fermentans
           DSM 20731]
 gi|283953617|gb|ADB48420.1| glucose inhibited division protein A [Acidaminococcus fermentans
           DSM 20731]
          Length = 626

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/622 (43%), Positives = 377/622 (60%), Gaps = 20/622 (3%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA++G  T L T     I  M CNP++GG  KGHLVREIDAL G MG 
Sbjct: 13  GAGHAGCEAALAAARMGQKTLLATLSMDNIALMPCNPSVGGPAKGHLVREIDALGGQMGL 72

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
            AD A IQ R+LN  KG AV+  R QAD+ LY   M+  + +Q+NLDV Q  +     + 
Sbjct: 73  AADEACIQMRMLNTGKGYAVQALRAQADKPLYHTIMKEVVENQDNLDVKQLMIDKLLVKN 132

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             +  +  +   +     V+L TGT+LRG I  G++   +G +G   +  L  S  +   
Sbjct: 133 GQVQGVEAETGEVFEADAVILCTGTYLRGKILYGEVAYMSGPIGQRSAMKLTGSLQEAGL 192

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHR 251
              R KTGTPAR+D +T+ + K E Q+ DER+  FSFM+   T  Q+ C +T TN  TH+
Sbjct: 193 QLMRFKTGTPARVDARTLDYTKMEPQYGDERVRNFSFMSTITTRNQVPCYLTYTNPRTHQ 252

Query: 252 IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS 311
           II +N+  S +++G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEGL T+ VY  G+S
Sbjct: 253 IIRDNLDRSCMFNGMIEGVGPRYCPSIESKIIRFADKDRHQLFLEPEGLRTNEVYVQGMS 312

Query: 312 TALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING 371
           ++LP EIQ  F++TIPGLE   ++R GYAIEYD ++P +L   LE K ISGLF AGQ NG
Sbjct: 313 SSLPAEIQVAFMQTIPGLEHCKMMRAGYAIEYDCLDPLQLKANLEHKAISGLFSAGQANG 372

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
           T+GYEEAAAQGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPYRM TSRA
Sbjct: 373 TSGYEEAAAQGLMAGINAALKLQGKKPLILKRSDAYIGVLIDDLVTKGTTEPYRMMTSRA 432

Query: 432 EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS-S 490
           EYR+ LR DNAD RLT  G  +G + +    R+A + ++ + +   L    L+  NL+ S
Sbjct: 433 EYRLLLRQDNADLRLTQKGRDVGLVTD---DRYAAFTRKRDVIERTL--FNLSKINLAPS 487

Query: 491 TSISFKQDGKTRTA-------YEFLSYPDFSIQNLFSICPDARKFSSLVI---ERLQIES 540
                K  G   TA        + L  P+ + + L     DA     L +   E++ ++ 
Sbjct: 488 EENQEKVTGMGSTALRSSINMLDLLRRPEVTYEKL----ADAFGLEKLPVDAAEQVDVQV 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  E +     E +L+P+D DY+ +  LS+E  EKL+  +P ++ QAS+I G
Sbjct: 544 KYQGYIRKQKQEVERALKLEDKLLPEDMDYTKIQELSSEAMEKLTKQRPVSIGQASRISG 603

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++L+++++    K  E
Sbjct: 604 VSPADISVLMVWLETQRRKGEE 625


>gi|284926412|gb|ADC28764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 619

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/618 (43%), Positives = 369/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYGLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|282858649|ref|ZP_06267807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bivia JCVIHMP010]
 gi|282588567|gb|EFB93714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bivia JCVIHMP010]
          Length = 631

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/628 (41%), Positives = 374/628 (59%), Gaps = 19/628 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T L+T   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANIGAKTCLLTMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V DA+ IQFR+LN  KGPAV  PR Q DR+L+ +   RE L + ++LD+ Q + 
Sbjct: 65  GGHMGLVTDASAIQFRMLNRSKGPAVWSPRAQCDRQLF-INFWRETLDKTDHLDIFQDQA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIR--------CSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                EKN  S+   Q    +R          TV++T GTFL G++HIGK ++  GR+ +
Sbjct: 124 EELLVEKNDASAETEQRVIGVRTIWGIDVYARTVIITAGTFLNGLMHIGKKQVAGGRISE 183

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
              ++   S  +      R+KTGTP R+D +++ ++ TE+Q  +     FSF   + +  
Sbjct: 184 PAVHNFSESITRLGITVARMKTGTPVRIDKRSVHFEDTEEQPGECDYHQFSFFGAQRSLP 243

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C    TN E H  +  ++  S +++G I+S GPRYCPSIE K+V F ++  H +FLE
Sbjct: 244 QLPCWTFNTNEEVHETLRNSLSESPLFNGQIQSTGPRYCPSIETKLVTFPDKQSHPLFLE 303

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG+NT+ +Y NG S+++P ++Q + I  IP L    I RPGYAIEYDY +P +L P+LE
Sbjct: 304 PEGVNTNEMYLNGFSSSMPWDVQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKPSLE 363

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           +K + GLF AGQ+NGTTGYEEA  QG+VAGIN+AR          +R +SYIGV+IDDLT
Sbjct: 364 SKIVEGLFFAGQVNGTTGYEEAGGQGMVAGINAARLCTDNQPFIMNRDESYIGVLIDDLT 423

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSRAEYRI LR D+AD RLT     LG     R   + +  +  N + +
Sbjct: 424 TKGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYALGVAKRDRYDWWLQKKENINRIET 483

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------ 528
              +  +  + ++     I       T    + +  P+ SI NL  + P  ++       
Sbjct: 484 FFNNTSVKPEQVNGLLEKIGSSTIKGTTKLIDLIGRPNVSINNLSEVLPQLKETIEASPN 543

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               + E  +I+  Y  Y  R+ I A+++   E   I   F+YS +  LS E ++KL  +
Sbjct: 544 RKEEIAEATEIKMKYKGYIERERIFAEKMHRLENMKIKGHFNYSEIHDLSTECRQKLERI 603

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  L QAS+I G++P  +N+LL+ + +
Sbjct: 604 QPETLAQASRIPGVSPNDINVLLVLMGR 631


>gi|124516565|gb|EAY58073.1| Glucose-inhibited division protein A [Leptospirillum rubarum]
          Length = 605

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/615 (42%), Positives = 370/615 (60%), Gaps = 20/615 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV++IGGGH+G EAAA ++++G  T L+T     IG MSCNP++GG+GKGH+V EI+A+
Sbjct: 4   WDVVIIGGGHSGIEAAAASSRMGLETLLVTLHLDLIGQMSCNPSVGGIGKGHIVSEIEAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M ++ADA+G+QF++LN +KG AV+  R Q DR  YR   +  +    NL   QGEV 
Sbjct: 64  GGAMSKLADASGLQFKMLNTRKGYAVQALRVQCDRYRYRQQARFFLEKYPNLFFRQGEVV 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G+    ++++S+++ D + I   + VLTTGTFL G +H+G+  +  GR G+  ++ L + 
Sbjct: 124 GWRLRGSLVTSVLLHDETEIFARSFVLTTGTFLSGKLHVGERLVEGGRGGEKNASHLSSR 183

Query: 186 FM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
                    GRLKTGTP R+ GKTI + + + Q  D   + FS   D         Q  C
Sbjct: 184 LQGDLGLSVGRLKTGTPPRISGKTIDFSRMDIQPGDNPPVFFSHHPDNGRLFFDGPQYPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +T  II EN+  S +YSG IK  GPRYCPSIEDKIV+F ER  H +F+EPEG 
Sbjct: 244 YLTSTNNQTADIIRENLSRSPLYSGKIKGIGPRYCPSIEDKIVKFPERESHHVFIEPEGA 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D  YPNGIST+LP ++Q + + +IPGLE   I RPGYA+EYD++ P +L  +L+   +
Sbjct: 304 DVDEFYPNGISTSLPVDVQERIVHSIPGLENAQITRPGYAVEYDFVFPDQLDLSLKVSHL 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +FLAGQINGTTGYEEAA QGLVAGIN+   +         RT SYIGVMIDDL S+GV
Sbjct: 364 ENVFLAGQINGTTGYEEAAGQGLVAGINAGLLAKGNAPWIPDRTFSYIGVMIDDLVSQGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE R+ +R  NAD+R+TP+G  LG + + + + F K  + ++ L+ +L++
Sbjct: 424 DEPYRMFTSRAENRLFIRHHNADDRMTPLGKSLGVVPDSQWRIFEKKRESFSQLKKILQT 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                KN   T    KQ            +PD SI  +++  P   +F  +  E    E 
Sbjct: 484 HRAEGKNFLQT---LKQ-----PEVHLDDFPDPSISGIYATWP---RFWQIGFES---EI 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y      + +++K EE   IP+ F  S  P +S E+  +L    P    +A  I G
Sbjct: 530 KYEGYIRISEKKTQDLK-EEDYPIPEGFWNSPPPGISREIFTRLVKASPRTFREAMHIRG 588

Query: 601 MTPAALNLLLIYIKK 615
           MTP AL  L   +++
Sbjct: 589 MTPGALESLRTKLRQ 603


>gi|86150404|ref|ZP_01068630.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839229|gb|EAQ56492.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 619

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 370/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDK+ RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKVNRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|153951262|ref|YP_001397717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|166222921|sp|A7H2I7|MNMG_CAMJD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152938708|gb|ABS43449.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 619

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/616 (43%), Positives = 373/616 (60%), Gaps = 11/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q +V+
Sbjct: 62  GGFMGEITDEAGIQFRILNESKGVAVQGSRVQIDMDKYRIIARNKLLKLPNLEISQEQVS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDKVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D  +I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDATSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + ++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLHSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAVQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY-NFLRSLLKSLV-- 482
           MFTSRAE+R+ LR +NA  RL   G  LG + E+    FA YIQ   N L+  L+ L+  
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYVLGLLSEQ---DFA-YIQNIANNLQKGLEFLLSK 477

Query: 483 -LTSKNLSSTSISFKQDGKTRTAYEF---LSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             T  N ++  +    + K  +   F   ++   F I+ L  + P      +  +  +  
Sbjct: 478 EFTPNNQNNAFLESLGEDKISSIVNFQKIVARASFDIEKLKKLDPMFETMDNYSLREILN 537

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I
Sbjct: 538 EAKYCHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQI 597

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAAL++L IYIK
Sbjct: 598 SGITPAALDILQIYIK 613


>gi|242310097|ref|ZP_04809252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter pullorum MIT 98-5489]
 gi|239523394|gb|EEQ63260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter pullorum MIT 98-5489]
          Length = 637

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/634 (43%), Positives = 373/634 (58%), Gaps = 19/634 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA+ V+AK+G  T L+T     IG+ SCNPA+GGLGKGHLV+E+DAL
Sbjct: 3   YDVIVIGGGHAGIEASIVSAKMGCKTLLLTILVEQIGAASCNPAVGGLGKGHLVKEVDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G+MG + D  GIQFR LN  KGPAVRG R Q D + Y++ + REI  Q +NL++ Q  V
Sbjct: 63  GGVMGYITDKCGIQFRTLNASKGPAVRGTRAQIDMDRYKI-IAREICYQTQNLEISQQIV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +        R   V+LTTGTFLRG IHIG+     GR G+ P+  L +
Sbjct: 122 ESLIVENQSVVGVKTSIGKEYRAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELGD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK------ITNRQI 238
              +   + GRLKTGT AR+   +I +   EK + D     FS  T K       +  Q+
Sbjct: 182 CLREMGLEVGRLKTGTCARIKASSINFAILEKHYGDIPTPYFSKQTQKELGNQEFSPTQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N   + ++ G I+  GPRYCPSIEDK+ RF ++  HQ+FLEP+
Sbjct: 242 PCYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEPQ 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L  +  Y NG++T+LP +IQ + I +I GLE   I+R GYAIEYDY+NP EL  TLETK
Sbjct: 302 TLEANEYYINGLTTSLPFDIQEEMIHSIEGLENAEIVRYGYAIEYDYVNPTELKHTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           K   L+ AGQINGTTGYEEAAAQG+ AGIN++      + I   R ++YIGVMIDDL +K
Sbjct: 362 KYKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGREEIILKRNEAYIGVMIDDLVTK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMF+SRAEYR+ LR  NA  RL  +   LG + E   +   +  +        L
Sbjct: 422 GTKEPYRMFSSRAEYRLLLREGNAIFRLGELAYNLGLMQEDEYQELLRDKKAIMEGIEWL 481

Query: 479 KSLVLTSKN--LSSTSISFKQDGKTRTAYEFL-SYPDFSIQNLFSICP----DARKFSSL 531
            S  +T  N  L+   +  ++    +T +  + S   F I  L  IC          S  
Sbjct: 482 NSTTITPTNEILAFLDLIGEEKISDKTTWRTIASRRSFDIHKLLKICEIIPTPFVGLSER 541

Query: 532 VIERLQIESSYAAYTGRQ--MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            +E + IE+ YA Y  +Q  +I+  +     K  IP+DF +  +P LS E+ EKL    P
Sbjct: 542 ALEEILIEAKYANYIEKQQNLIDNMDKMLSIK--IPQDFSFDGIPGLSLEVIEKLKKFTP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
            +L +AS+I G+TPA+L +L +YI     K N++
Sbjct: 600 KSLFEASEISGVTPASLEVLQLYIHLYHQKQNKL 633


>gi|332291817|ref|YP_004430426.1| glucose inhibited division protein A [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169903|gb|AEE19158.1| glucose inhibited division protein A [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 625

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/628 (42%), Positives = 388/628 (61%), Gaps = 18/628 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   +YDVIV+G GHAGCEAAA AA +G+ST LIT    TI  MSCNPA+GG+ KG +VR
Sbjct: 3   LFQDTYDVIVVGAGHAGCEAAAAAANMGSSTLLITMNLQTIAQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    + ++   +NLD  
Sbjct: 63  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRMKLEGTKNLDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E + +  +       +R  +VVLT GTFL G+IHIG  +   GR G+  + 
Sbjct: 123 QEMVSGLIVENDKVVGVKTSLGIEVRGRSVVLTNGTFLNGLIHIGDKQFGGGRAGERAAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN---RQ 237
            +      F F++GR+KTGTP R+DG+++ + K   Q  DE  +P  F   K T+    Q
Sbjct: 183 GITEQLAGFGFESGRMKTGTPPRVDGRSLDFSKMIIQPGDE--VPEKFSYSKETSPLTHQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C ++ T+LE H I+ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EP
Sbjct: 241 RPCHMSYTSLEVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFIEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT  +Y NG ST+LPE++Q + ++++ G E V   RPGYAIEYDY  P +L  TLET
Sbjct: 301 EGWNTCEIYVNGFSTSLPEDVQFKALKSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLET 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +SGL+ AGQINGTTGYEEAA+QGL+AG+N+  K ++ D     R ++YIGV+IDDL +
Sbjct: 361 KLVSGLYFAGQINGTTGYEEAASQGLMAGMNAHLKVHEKDPFMLKRDEAYIGVLIDDLIT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRMFTSRAEYR  LR DNAD RLTP+   +G   E R     K   E N L + 
Sbjct: 421 KGTEEPYRMFTSRAEYRTLLRQDNADERLTPMSNAVGLASEERLITMEKKQAESNDLVNF 480

Query: 478 LKSLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNL-----FSICPDARK 527
            +   +  + ++       S   +Q  K    ++  S P  ++ ++      +   + + 
Sbjct: 481 FEETSILPEEVNDILEERGSSPMRQSDKM---FKVFSRPQITLDDMKGFEKVAAYIEEKD 537

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               V+E+ +I+  YA Y  ++   A +++  E   IP+ FDY+ L +LS E +EKLS +
Sbjct: 538 LDRDVLEQAEIKVKYAGYIAKEKANADKLQRLENIKIPEGFDYTKLKSLSFEAREKLSKI 597

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  + QAS++ G++P+ ++++L+Y+ +
Sbjct: 598 RPTTISQASRVSGVSPSDISVMLVYMGR 625


>gi|123967098|ref|YP_001012179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9515]
 gi|166222718|sp|A2BZ61|MNMG_PROM5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123201464|gb|ABM73072.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9515]
          Length = 654

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 279/631 (44%), Positives = 369/631 (58%), Gaps = 24/631 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 --------EVAGFN-TEKNIISSIVMQDNSMIRC---STVVLTTGTFLRGVIHIGKLKIP 170
                   EV  F    KN    I         C    ++++T GTFL G I IG   + 
Sbjct: 128 MITELLIKEVETFTKNSKNTTKQIKGVKTFFGTCYSAKSIIITAGTFLEGRIWIGNKSMS 187

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G+  +  L  S       T RLKTGTPAR+D K+I +D  + Q +      FSF  
Sbjct: 188 AGRSGEQAAQGLTESLHSLGIKTERLKTGTPARVDKKSISFDALDIQPSTASDKYFSF-D 246

Query: 231 DKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            KI N   QI C ITRT  +TH +I  N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 247 PKIKNDMPQICCHITRTTQKTHELIRNNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 306

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           N HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 307 NSHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLNKCKMLRPAYAVEYEYIPA 366

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LET +I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK N  D I FSR  SYI
Sbjct: 367 TQLKLSLETIEIDNLFSAGQINGTTGYEEAAAQGLVAGINATRKLNMKDPIIFSRESSYI 426

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR---QKRFA 465
           G MI+DL ++ + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I ERR    K   
Sbjct: 427 GTMINDLITRDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGFEIGLIDERRWFAHKEKM 486

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSIC 522
           K ++E N   S L++  L   +  + +I  +   K +   T  + L  P+    +     
Sbjct: 487 KLLKEEN---SRLENTRLKCTDEIARNIELESGSKIKGSTTLKDLLKRPNVHYSDFIKYD 543

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              +     V+E ++I+  Y  Y  RQ     +I  +  + +P + +Y  +  LS E +E
Sbjct: 544 LANKSLPIAVMEGVEIDIKYEGYLKRQQNNIDQINRQSLKSLPIEINYDLIDTLSLEARE 603

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            L+ +KP N   ASKI G++ A L  LL+++
Sbjct: 604 NLNKIKPTNFGDASKIPGVSKADLTALLVWL 634


>gi|320530989|ref|ZP_08032021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas artemidis F0399]
 gi|320136738|gb|EFW28688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas artemidis F0399]
          Length = 626

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/615 (42%), Positives = 376/615 (61%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAG EAA  AA+LG  T  +T     I  M CNP++GG GK HLVREIDAL
Sbjct: 7   YDIIVVGAGHAGVEAALAAARLGRRTLCVTLSLDNIAMMPCNPSVGGPGKSHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + +  +LDV Q  V 
Sbjct: 67  GGEMGVAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTPHLDVRQLLVT 126

Query: 126 GFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              +E+      ++ I  +    I    V+L TGT+LRG I +G+     G  G  P+  
Sbjct: 127 ELLSEETEDGRRVTGIRCETGEQITARAVILATGTYLRGRIILGETIYDGGPNGQRPAMQ 186

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S         R KTGTPAR+D +T+ + +T+ Q  +E   PFSFMT+K+   Q+ C 
Sbjct: 187 LSDSLRALGLKIMRFKTGTPARVDARTVDFSRTQVQEGEENAPPFSFMTEKMPREQVRCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  + + +G I+  GPRYCPS+E KI RF ++  HQ+FLEPEGL+
Sbjct: 247 LTYTNAATHEVIRVNLHRAPMANGVIEGIGPRYCPSVETKIARFPDKERHQLFLEPEGLH 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+ST+LP ++Q +F+RTI GLE   I+RPGYAIEYD  +P  L P+L  K ++
Sbjct: 307 TNELYVQGMSTSLPTDVQEEFLRTIAGLEHARIMRPGYAIEYDCFDPLGLEPSLAVKGVA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+  GQ NGT+GYEEAAAQGL+AGIN+AR++   + +   R+D YIGV+IDDL +KG  
Sbjct: 367 GLYSCGQANGTSGYEEAAAQGLIAGINAAREAAGEEPLILGRSDGYIGVLIDDLVTKGTE 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLTP+G ++G + + R  +F            LL++ 
Sbjct: 427 EPYRMMTSRAEYRLILRQDNADLRLTPVGREIGLVSDARWAKFTAKRDAIEAALHLLETT 486

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLS-YPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            LT    +   ++       RT     +        ++ S   D    +  V E ++I  
Sbjct: 487 KLTPDAATEGRLADAGLLPLRTPMNLAALLRREGSYDVLSALFDLPILADDVKEEVEITV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  +   ++  E+R IP++ DY+++ +L  E +EKL+ ++P ++ QAS+I G
Sbjct: 547 RYDGYIRKQREQIARMERLERRRIPEEIDYAAITSLRLEAQEKLAAVRPHSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           ++PA +++LL+Y++K
Sbjct: 607 VSPADVSMLLVYLEK 621


>gi|293380886|ref|ZP_06626922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 214-1]
 gi|290922559|gb|EFD99525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 214-1]
          Length = 634

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 364/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 12  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 72  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 132 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C +T
Sbjct: 192 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESRDEDYLQKQISCWMT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 252 YTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDHHQIFLEPEGKTTK 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 312 EVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 372 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I +   +RFA++ ++ + +      L  
Sbjct: 432 YRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISD---ERFARFEEKKHAIEDAKTRLHE 488

Query: 484 TSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + +L+     F Q  G+        A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY+ +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYNQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YI+
Sbjct: 609 ISGVNPADLAILSVYIQ 625


>gi|323467507|gb|ADX71194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus helveticus H10]
          Length = 661

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/614 (42%), Positives = 360/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 QLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRTTR 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNIKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  + V
Sbjct: 430 YRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHEITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             + ++     S  Q+       A  FL  P+  I ++  +  +       V E+++I  
Sbjct: 490 HLNDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|41058573|gb|AAR99270.1| glucose-inhibited division protein A [Candidatus Blochmannia
           pennsylvanicus]
          Length = 594

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 279/587 (47%), Positives = 366/587 (62%), Gaps = 15/587 (2%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QAD
Sbjct: 3   TLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQAD 62

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFL 158
           + LYR A++  +  Q+ L VIQ  V       N I  ++     M    ++VVLTTGTFL
Sbjct: 63  KILYRQAIRSILEYQKFLLVIQASVEDLIVSGNKIVGVITPKLGMKFSGTSVVLTTGTFL 122

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GDS S+SL +  +K   F   RLKTGT  R+  K I +     Q
Sbjct: 123 NGKIHIGMNNFRGGRSGDSESSSLLSERLKELSFQISRLKTGTSPRVHTKGINFGSLRAQ 182

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D+ +  FSF+ + K+   Q+ C IT TN +TH I+  N+  S +Y+G IK   PRYCP
Sbjct: 183 YSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIVRSNLYQSPMYTGLIKGIAPRYCP 242

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   IIR
Sbjct: 243 SIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMQMIKSIQGLENACIIR 302

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 303 PGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSKNK 362

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I
Sbjct: 363 EGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLI 422

Query: 457 GERRQKRFAKYIQEYNFLRSLLK--------SLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
            E R K F    +     R  L+        S V    N   T ++ + +G+       +
Sbjct: 423 DESRWKAFCCKKENIEKERQRLRNTYIFPYSSDVAQLNNFLKTPLTHETNGEDLLRRPEI 482

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +Y   S  + FS     R+    V E+++I+  Y  Y   Q  E K   + E  L+P D 
Sbjct: 483 NYKKLSQLSTFSPSILDRQ----VFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDI 538

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D++ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 539 DFNIVSGLSQEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKK 585


>gi|86131106|ref|ZP_01049705.1| glucose inhibited division protein A [Dokdonia donghaensis MED134]
 gi|85818517|gb|EAQ39677.1| glucose inhibited division protein A [Dokdonia donghaensis MED134]
          Length = 625

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 387/627 (61%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   +YDVIV+G GHAGCEAAA AA +G+ST L+T    TI  MSCNPA+GG+ KG +VR
Sbjct: 3   LFQDTYDVIVVGAGHAGCEAAAAAANMGSSTLLVTMNLQTIAQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 63  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLRLEGTPNLDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E N +  +       +R  +VVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 123 QEMVSGLLVENNKVVGVTTSLGIKVRGRSVVLTNGTFLNGLIHIGEKQFGGGRAGERAAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQI 238
            +    + F FD+GR+KTGTP R+DG+++ + K   Q  D+    FS+   T  +TN Q 
Sbjct: 183 GITEQLLDFGFDSGRMKTGTPPRVDGRSLDFSKMIIQPGDDVPEKFSYSKETSPLTN-QR 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C ++ T+ E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPE
Sbjct: 242 PCHMSYTSPEVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +T  +Y NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK
Sbjct: 302 GWDTCEIYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +SGL+ AGQINGTTGYEEAA+QGL+AG+N+  K +  +     R ++YIGV+IDDL +K
Sbjct: 362 LVSGLYFAGQINGTTGYEEAASQGLIAGMNAHLKVHDQEPFTLQRDEAYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR  LR DNAD RLTP   K+G   E R     K  ++ + L    
Sbjct: 422 GTEEPYRMFTSRAEYRTLLRQDNADERLTPRSHKVGLASEERLVTMEKKREQSDNLVKFF 481

Query: 479 KSLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNL-----FSICPDARKF 528
           +   +  + +++      S   +Q  K    ++  S P   ++++      +   D    
Sbjct: 482 EDTSILPEEVNNILEERGSSPMRQSDKM---FKVFSRPQIHLEDMKQFKKVAAYIDEYSL 538

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V+E+ +I+  YA Y  ++   A +++  E   IP +FDYS L +LS E +EKLS ++
Sbjct: 539 ERDVLEQAEIKVKYAGYIAKEKANADKLQRLENIKIPDNFDYSKLKSLSFEAREKLSKIR 598

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QAS++ G++P+ ++++L+Y+ +
Sbjct: 599 PTTISQASRVSGVSPSDISVMLVYMGR 625


>gi|307265443|ref|ZP_07546999.1| glucose inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919557|gb|EFN49775.1| glucose inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 581

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/564 (45%), Positives = 350/564 (62%), Gaps = 10/564 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDAL
Sbjct: 8   YDVVVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+ 
Sbjct: 68  GGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEIV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  +
Sbjct: 128 DILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFNSGPSGLFPANELSET 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T T
Sbjct: 188 LKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  +
Sbjct: 248 NKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+ 
Sbjct: 308 YVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLYF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKLLNEPSVILDRSQAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD RLT +G K+G + E R ++F  K IQ    ++ L   +V  
Sbjct: 428 MLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMQRLPGVIVKP 487

Query: 485 SKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
           S+ +++  IS    G T        Y  L  P+   ++   +  D        V E++ I
Sbjct: 488 SEEVNNFLIS---KGSTPLVTGIDLYTLLKRPEIDYKSTKFLDKDRPHDILDSVAEQIDI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKR 562
              Y  Y  +Q+ + +  K  E +
Sbjct: 545 NIKYEGYIMKQLRQVEHFKALENK 568


>gi|148926192|ref|ZP_01809877.1| glucose inhibited division protein A like protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145845363|gb|EDK22456.1| glucose inhibited division protein A like protein [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 619

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 369/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAVQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|41058582|gb|AAR99276.1| glucose-inhibited division protein A [Candidatus Blochmannia
           novaeboracensis]
          Length = 593

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 277/587 (47%), Positives = 366/587 (62%), Gaps = 15/587 (2%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QAD
Sbjct: 2   TLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQAD 61

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFL 158
           + LYR A++  +  Q+ L VIQ  V      +N I  ++     M    ++VVLTTGTFL
Sbjct: 62  KILYRQAIRNILEYQKFLLVIQASVEDLIVSRNRIVGVITPKLGMKFSGTSVVLTTGTFL 121

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GDS S+SL +  +K       RLKTGT  R+  K I +D    Q
Sbjct: 122 NGKIHIGMNNFRGGRSGDSESSSLLSERLKELSLQVNRLKTGTSPRVHTKGINFDSLRAQ 181

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D+ +  FSF+ + K+   Q+ C IT TN +TH II  N+  S +Y+G IK   PRYCP
Sbjct: 182 YSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIIRSNLHQSPMYTGVIKGIAPRYCP 241

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q + I++I GLE  +I+R
Sbjct: 242 SIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMKMIKSIQGLENADIVR 301

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 302 PGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 361

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I
Sbjct: 362 EGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLI 421

Query: 457 GERRQKRFAKYIQEYNFLRSLLK--------SLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
            E R K F    +     R  L+        S V    N   T +  + +G+       +
Sbjct: 422 DESRWKDFCCKKENIEKERQRLRNTYVFPYSSDVAQLNNFLKTPLIHEANGEDLLRRPEI 481

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +Y   S  + F      R+    V E+++I+  Y  Y   Q  E K   + E  L+P D 
Sbjct: 482 NYTKLSQLSTFGPSVLDRQ----VFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDI 537

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D++ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 538 DFNIVSGLSKEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKK 584


>gi|256843836|ref|ZP_05549323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 125-2-CHN]
 gi|256613741|gb|EEU18943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 125-2-CHN]
          Length = 632

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/617 (42%), Positives = 363/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGKTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I +   +RFA++ ++ + +      L  
Sbjct: 430 YRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISD---ERFARFEEKKHAIEDAKTRLHE 486

Query: 484 TSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + +L+     F Q  G+        A  FL  P+ +I ++  +  +       V E+++
Sbjct: 487 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YIK
Sbjct: 607 ISGVNPADLAILSVYIK 623


>gi|228469898|ref|ZP_04054837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas uenonis 60-3]
 gi|228308533|gb|EEK17321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas uenonis 60-3]
          Length = 625

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/630 (42%), Positives = 378/630 (60%), Gaps = 29/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VREIDAL
Sbjct: 5   FDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G  G+++DAA IQ+R+LN  KGPA+  PR Q DR    EL+R  + R     + LD+ Q
Sbjct: 65  GGYTGQLSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDR----TDGLDLWQ 120

Query: 122 GEVA----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
             V     G    K+++   V Q       + V++T GTFL G++H G+  IP GR+ + 
Sbjct: 121 DFVVDIKFGAADGKHLV---VTQLGMTFTAAKVIVTAGTFLGGLMHFGRTMIPGGRISEP 177

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNR 236
            S+ L    +       R+KTGTPAR+DG+++ W   E+Q  D+    FSF+   +   R
Sbjct: 178 ASHGLTECLVAAGHHADRMKTGTPARIDGRSVDWSLVEEQPGDDETGHFSFLPMQRKPLR 237

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLE
Sbjct: 238 QRSCYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLE 297

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG  T+  Y NG S++LP + Q + ++TIP L  V + RPGYAIEYD+ +P++L  TLE
Sbjct: 298 PEGEETNEYYLNGFSSSLPIDTQIRALQTIPALRHVQLYRPGYAIEYDFFDPRDLHHTLE 357

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           +K +SGL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL 
Sbjct: 358 SKVVSGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLILRRDEAYIGVLIDDLV 417

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  Q    L  
Sbjct: 418 TKGVDEPYRMFTSRAEYRILLRQDNADLRLTPYAERLGLATAERLSRLEQIKQRMAELEQ 477

Query: 477 LLKSLVLTSKNLSSTSISFKQD----GKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSL 531
           L  +  +  ++++    S  ++    G   T    L  P  SI  L +   D A + +S+
Sbjct: 478 LCANYSVKPESVNGYLSSLGENPLDFGTKLTT--LLLRPHVSISGLIAHLNDFATQVASI 535

Query: 532 ------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 V+ R +    Y  Y  R+   A+++   E   +   FDY  + AL  E +EKLS
Sbjct: 536 IGDDTEVLTRTETSIKYQGYIEREEQAAQKLHRLESLTLGDKFDYQQISALPIEAREKLS 595

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P  + QA++I G++P+ +N+LL+ + +
Sbjct: 596 RIRPATIAQAARIPGISPSDINILLVLLGR 625


>gi|149199475|ref|ZP_01876510.1| glucose-inhibited division protein A [Lentisphaera araneosa
           HTCC2155]
 gi|149137410|gb|EDM25828.1| glucose-inhibited division protein A [Lentisphaera araneosa
           HTCC2155]
          Length = 609

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/621 (43%), Positives = 378/621 (60%), Gaps = 31/621 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIVIGGGHAG EA+  +A++GA T LIT     IG MSCNPAIGG+ KGH+VREID
Sbjct: 2   KNYDVIVIGGGHAGIEASLASARMGAETLLITQNLDHIGQMSCNPAIGGIAKGHVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MG+  DA+ +QFR+LN  +GPAV  PR Q D+ LY+  M++++   E L   Q E
Sbjct: 62  AMGGEMGQNTDASALQFRMLNASRGPAVWSPRAQCDKVLYQRRMKQQLEKTEKLHTHQAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              F TEK+ I ++  Q        + VL  GTF+RG++H G  ++P GR GD+ ++++ 
Sbjct: 122 GLSFVTEKSKIIAVQTQFGDKFEAKSFVLCCGTFMRGLMHFGPQQLPGGRTGDTAADAIS 181

Query: 184 NSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--------DKIT 234
            S       +  RLKTGTP R+  KTI ++K E+Q  D     FS+          D+  
Sbjct: 182 ESLKNDLGLELMRLKTGTPPRVLAKTIDFEKLERQ--DGECGEFSYWPREKEYETIDRGG 239

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C I RT+ ET ++I +N+  S +Y+G I + G RYCPSIEDKI RFG+++ HQ+F
Sbjct: 240 IPQMPCYIGRTSAETKQVIADNLHLSPMYNGSIDAIGTRYCPSIEDKIHRFGDKDSHQVF 299

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+ T+  Y NGIST+LP +IQ++ + +IPGLEK  I R  YA+EYD ++P +   +
Sbjct: 300 LEPEGVFTEEYYLNGISTSLPVQIQNKIVHSIPGLEKAEIARYAYAVEYDVVSPHQTQNS 359

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  K    LF+AGQINGT+GYEEAA QGL+AG N+A        +   R  +YIGVMIDD
Sbjct: 360 LALKSWPNLFVAGQINGTSGYEEAAGQGLIAGANAAGLVAGKPPLILERDQAYIGVMIDD 419

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +K + EPYR+FTSRAEYR+ LR DNAD RL+ I    G +   + K  AK  +     
Sbjct: 420 LVTKDISEPYRLFTSRAEYRLLLRQDNADRRLSKIAYDYGLLPYEKYK-IAKDKE----- 473

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            +L+   +   KN        +  GK+   +E LS    S +N +            V E
Sbjct: 474 -TLIDDEIERLKNE-------RHHGKS--LWEHLS----SHKNTYESVVGESDLPDDVKE 519

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++QI++ Y  Y  R+  + +  K   K  IP+D DY ++  L NE K KLS  +P +L Q
Sbjct: 520 QVQIDARYECYIQREKQQVERQKRLAKNPIPEDLDYLNITGLGNEAKNKLSRYRPVDLGQ 579

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A++I+G+TPA + L+ ++IK+
Sbjct: 580 AARIDGVTPAEIGLIQVHIKR 600


>gi|71894526|ref|YP_278634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma synoviae 53]
 gi|123644047|sp|Q4A5P8|MNMG_MYCS5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71851314|gb|AAZ43923.1| glucose inhibited division protein A [Mycoplasma synoviae 53]
          Length = 609

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/615 (42%), Positives = 379/615 (61%), Gaps = 15/615 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N ++D IVIG GHAG EAA   AK     ALIT   S I  M CNP+IGG  KG + RE
Sbjct: 1   MNNNFDAIVIGAGHAGVEAAFALAKSNNKVALITFDLSKITMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  +D A IQ ++LN  KGPAVR  R Q D+E Y   ++ ++    N+ +I+
Sbjct: 61  IDALGGIQGYYSDLAMIQIKMLNDSKGPAVRAIRAQIDKEKYSKLIREDLQKNSNITLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +K +  S+V+     I     VLTTGT++   I  G     +G  G   +N 
Sbjct: 121 AGVYEIKADKKVFKSVVLSTGEEIFAKVCVLTTGTYMNSQILRGSSVTVSGPDGQKTTNK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  S  K  F+  R KTGTPAR+   +I + K EK+  D   + FS  ++K  N+Q+ C 
Sbjct: 181 ISESLKKLGFELQRFKTGTPARIYKSSIDFSKVEKEILDTNDLNFSNRSNKKLNQQVSCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II+ N+  S++YSG IK  GPRYCPSIEDK+VRF +RN HQ+F EPE L+
Sbjct: 241 LTYTNEKTHEIILNNLDKSSMYSGLIKGTGPRYCPSIEDKVVRFSDRNRHQVFFEPETLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             ++Y NG+ST++PE+IQ QF++TIPGLE + I + GYAIEYD +N  +L  +LETK I 
Sbjct: 301 ETIIYLNGLSTSMPEDIQMQFLKTIPGLENLKIQKYGYAIEYDALNSLDLKHSLETKVIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQINGT+GYEEAAAQGL+AGIN+A K      +   R+D+YIGV+IDDL  KG  
Sbjct: 361 NFFAAGQINGTSGYEEAAAQGLIAGINAALKLKNKKPLVLKRSDAYIGVLIDDLVIKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DN+D RL+  G KLG I    +  +++  ++Y  + S +   
Sbjct: 421 EPYRMLTSRAEYRLLLRHDNSDYRLSKYGYKLGLIS---KDEYSQIQKKYKNINSKIN-- 475

Query: 482 VLTSKNLSSTS-ISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            L+ K LS+ S I+ K + K  T+Y + L  P+ + +++        K+ + ++ ++++E
Sbjct: 476 YLSKKYLSTNSNIAKKYNIKEATSYLKLLLRPEINPKDILK----NYKYQNELLIKIKLE 531

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
                Y  +Q  +A  +K  EK  IP + +Y  +  L++E K+KL I+KP  + QA +I 
Sbjct: 532 ----GYIKKQKQDASRMKNLEKIKIPNNINYDKVLNLASEAKDKLKIIKPETIAQAYRIS 587

Query: 600 GMTPAALNLLLIYIK 614
           G+ P+ + +L+ ++K
Sbjct: 588 GINPSDIQMLIFHLK 602


>gi|295693882|ref|YP_003602492.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Lactobacillus crispatus ST1]
 gi|295031988|emb|CBL51467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus ST1]
          Length = 634

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 363/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 12  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 72  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 132 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C +T
Sbjct: 192 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESRDEDYLQKQISCWMT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 252 YTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGKTTK 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 312 EVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 372 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I +   +RFA++ ++ + +      L  
Sbjct: 432 YRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISD---ERFARFEEKKHAIEDAKTRLHE 488

Query: 484 TSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + +L+     F Q  G+        A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YI+
Sbjct: 609 ISGVNPADLAILSVYIQ 625


>gi|304437939|ref|ZP_07397885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369079|gb|EFM22758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 626

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 379/622 (60%), Gaps = 13/622 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP++GG GK HLVREI
Sbjct: 4   NTNYDIIVIGAGHAGVEAALAAARMGRRTLILTLSLDNIAMMPCNPSVGGPGKSHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENLDV Q 
Sbjct: 64  DALGGEMGLAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLDVRQL 123

Query: 123 EVAGFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V    TE++     ++ +V +    +    V+L TGT+LRG I +G+     G  G  P
Sbjct: 124 LVTELITEESTGEKRVTGVVCETGERLTAHAVILATGTYLRGRIILGETIYDGGPNGQRP 183

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           + +  +S         R KTGTPAR+D +T+   +T  Q  D     FSF+TD + + Q 
Sbjct: 184 AMAFSDSLRTAGLRLMRFKTGTPARVDRRTLDLAETALQEGDTDAPAFSFLTDTMPDAQT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH +I  N+  + + +G I+  GPRYCPSIE KI RF ++  HQ+FLEPE
Sbjct: 244 PCYLTYTNEATHAVIRANLHRAPMANGVIEGIGPRYCPSIETKIARFPDKERHQLFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+ST+LP ++Q +F+RTIPG+    ++RPGYAIEYD ++P +L  +L  K
Sbjct: 304 GLHTNEIYVQGMSTSLPTDVQEEFLRTIPGMHHARMMRPGYAIEYDCLDPLQLEASLAVK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I+GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR     + +   R+D YIGV+IDDL +K
Sbjct: 364 EIAGLYSAGQANGTSGYEEAAAQGLVAGINAARACMGEEPLILRRSDGYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DNAD RLTPIG ++G + + R  RF       +    LL
Sbjct: 424 GTEEPYRMMTSRAEYRLVLRQDNADLRLTPIGRRIGLVSDARWTRFTAKRGAIDAALRLL 483

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY----PDFSI-QNLFSICPDARKFSSLVI 533
           +   L+    +   ++       RT     +      D+ +   +F + P     +  V 
Sbjct: 484 RERRLSPSAETEALLAGAGISPLRTPMTLFALLAREGDYRVLAAVFDLPP----LADDVR 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++I + Y  Y  +Q  +   ++  E R IP  FDY+++ +L  E  EKLS ++P ++ 
Sbjct: 540 EEVEITARYDGYIRKQEEQIARMERLEARRIPAAFDYAAVTSLRLEAAEKLSAVRPRSIG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+Y+++
Sbjct: 600 QASRISGVSPADISVLLVYLER 621


>gi|154496172|ref|ZP_02034868.1| hypothetical protein BACCAP_00456 [Bacteroides capillosus ATCC
           29799]
 gi|150274727|gb|EDN01791.1| hypothetical protein BACCAP_00456 [Bacteroides capillosus ATCC
           29799]
          Length = 621

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 365/618 (59%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D+ VIG GHAG EAA  AA+LG  T   T     +G+M CNPAIGG GKGHLVREIDA
Sbjct: 7   TFDIAVIGAGHAGIEAALAAARLGLQTVCFTVNLDAVGNMPCNPAIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR ADAA IQ+R+LN  KGPAV   R QADR  Y+  M+  +  QENL V Q EV
Sbjct: 67  LGGEMGRAADAACIQYRILNKGKGPAVWSLRAQADRREYQKVMKHTLERQENLWVKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE+  +S++V    ++      V+ TGTFL G   +G +   +G  G S +  L +
Sbjct: 127 VEIRTEQGAVSAVVTATGAVYAVKAAVVCTGTFLGGRTIVGDVVRDSGPDGLSAALPLTD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                     R KTGTP R+  +++ + K E Q  D    PFSF T      +  C +T 
Sbjct: 187 CLKSLGLSIRRFKTGTPPRVHRRSVDFSKMELQPGDPDAQPFSFETATAPENKAVCHLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y G I+  GPRYCPSIE KIVRF E+  HQ+F+EP GL+T+ 
Sbjct: 247 TNAATHAVIRANLDRSPLYDGTIEGVGPRYCPSIETKIVRFPEKERHQLFIEPMGLDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q + + TIPGLE+  + R  YAIEYD ++P EL PTLE KK+ GL+
Sbjct: 307 LYIQGLSSSLPEEVQVEMLHTIPGLERAEMTRAAYAIEYDCVDPTELLPTLECKKVPGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAGIN+A K      +  SR   YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLVAGINAALKLLGRPPMVLSRDQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR EYR+  R DNAD RLT +G ++G + E   +R+   + +Y  +      L  T
Sbjct: 427 RMMTSRTEYRLLCRQDNADRRLTGVGHEVGLVSE---ERYRAMLDKYAAVDRECARLERT 483

Query: 485 SKNLSSTSISFKQDGKTRTA------YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             + S    +   D     A       + L  P  +  +L  + P      + V E ++I
Sbjct: 484 GVSPSPVLDALLSDKGEPPAPNGARLADLLRRPRMTYGDLTPLDPARPDLPAAVTEAVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  + +E++  E R +P D DY SL  L  E ++KLS ++P NL QAS+I
Sbjct: 544 DLKYRGYIERQQRQVEEMRRLESRPLPPDLDYQSLQGLRLEARQKLSEIRPLNLGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKN 616
            G++PA +  L+I +++ 
Sbjct: 604 SGVSPADIAALMIALERG 621


>gi|28379976|ref|NP_786868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum WCFS1]
 gi|308182179|ref|YP_003926307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38257498|sp|Q88RX6|MNMG_LACPL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28272817|emb|CAD65746.1| cell division protein GidA [Lactobacillus plantarum WCFS1]
 gi|308047670|gb|ADO00214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 636

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/623 (42%), Positives = 362/623 (58%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDGLIVEDGVCKGVITNTGARYSAKSVVLTTGTAARGKIIIGELMYSSGPNNSQPAMKLS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKIT-NRQIE 239
               +  F+  R KTGTP R+DG TI +  TE+Q  D     FSF T   D I    Q+ 
Sbjct: 190 GDLERLGFNLERFKTGTPPRVDGNTIDYSVTEEQPGDPEPHHFSFETKDADYIDLKHQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKKRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L  TLETK 
Sbjct: 310 RNTDEWYVQGLSTSMPEEVQQRILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKATLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG
Sbjct: 370 VKNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALDRGQFTLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    Q        L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTDKGRELGLIDDERYAAFEAKRQAIKNELDRLG 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDA-RKFSSLVIER 535
            + +   +  +  +     G+ +    A +FL  P+    +L    P A       VIE+
Sbjct: 490 KIRIKPNDEVNAFLRAHNSGELKDGVLAADFLKRPEVQYADLMKFIPAAPEPLERHVIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  +       +K  E + IP   DY ++  L+ E  +KL  ++P  + QA
Sbjct: 550 VEIQIKYAGYIQKAEERVDRLKKMEAKKIPDRIDYDAIDGLATEAHQKLKKIQPTTIAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA + +L +YI++  +
Sbjct: 610 SRISGVNPADIAILSVYIQQGRI 632


>gi|313904718|ref|ZP_07838092.1| glucose inhibited division protein A [Eubacterium cellulosolvens 6]
 gi|313470511|gb|EFR65839.1| glucose inhibited division protein A [Eubacterium cellulosolvens 6]
          Length = 631

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/625 (40%), Positives = 371/625 (59%), Gaps = 5/625 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +I ++YDV+V+G GHAGCEAA  +A+LG +T + T    +I  M CNP +GG  KGHLVR
Sbjct: 3   VIEKTYDVVVVGAGHAGCEAALASARLGLNTIVFTVSVDSIAMMPCNPNVGGTSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL + 
Sbjct: 63  EIDALGGEMGKNIDRTFIQSKMLNRSKGPAVHSLRAQADKREYSQRMREVMENQENLTIK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    E  +   +     ++     VVL TG +L      G    P G  G   + 
Sbjct: 123 QAEVSEIIVEDGVCKGVKTFSGAIYHSKAVVLCTGVYLNSRCLYGDTVNPTGPNGLQTAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
            L +S      +  R KTGTPAR+D +TI + K E+Q  D  ++PFSF TD   +   Q+
Sbjct: 183 HLTDSLKANGIEIFRFKTGTPARIDKRTIDFSKMEEQKGDNPVVPFSFSTDPEDVQIEQV 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +NI  S +YSG I + GPRYCPSIEDK+V+F +++ HQ+F+EPE
Sbjct: 243 SCWLTHTNEKTHEIIRKNIDRSPLYSGKIHATGPRYCPSIEDKVVKFADKDSHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y +G+S+++PE++Q    R++PGLE   I+R  YAIEYD INP +L  +LE K
Sbjct: 303 GRYTNEMYIDGMSSSMPEDVQDAMYRSVPGLENAKIVRNAYAIEYDCINPIQLDASLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF  GQ NG++GYEEAAAQG++AG+N+A +    + +   R+++YIGV+IDDL +K
Sbjct: 363 KIKGLFSGGQFNGSSGYEEAAAQGIIAGLNAALEVKGEEPVILDRSEAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSL 477
              EPYRM TSRAEYR+ LR DNAD RL   G + G +  E  +K   K  Q    +  +
Sbjct: 423 QTFEPYRMMTSRAEYRLLLRQDNADLRLRKYGHRAGLVSDEEYEKTLLKEKQIKEEIERV 482

Query: 478 LKSLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             + V  ++ +    +S          +  E +  P+ + + L  I     +  +   E+
Sbjct: 483 ENTYVGQTEKVQKFLVSHNSTELKSGSSLAELIRRPELNYEMLAEIDEARPELPAATAEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ+ + +  K +E R IP   +Y  +P+L  E ++KL   +P N+ QA
Sbjct: 543 VSIHIKYEGYIKRQLKQVEAFKKKEARKIPASINYDDVPSLRIEARQKLEQYRPMNIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKL 620
           S+I G++P+ +++L++Y++    KL
Sbjct: 603 SRISGVSPSDISVLMVYLESIGKKL 627


>gi|42561530|ref|NP_975981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42561553|ref|NP_976004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81170560|sp|Q6MRU5|MNMG_MYCMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42493029|emb|CAE77623.1| Glucose inhibited division protein A [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42493052|emb|CAE77646.1| Glucose inhibited division protein A [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 629

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/621 (41%), Positives = 374/621 (60%), Gaps = 14/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I    
Sbjct: 64  LGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLITRAC 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   ++N  ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  +  + 
Sbjct: 124 TGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTKGIS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S +       R KTGTPAR+   ++       +   +  + FSF T   T   +Q  C 
Sbjct: 184 QSLIDLGIKLMRFKTGTPARVYRDSVDLSNAVLEPGTDMKLAFSFSTSTYTPIEKQQPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  + LET +II +N++ SA+YSG +KS GPRYCPS EDK VRF E++ HQIF+EPE LN
Sbjct: 244 LIHSTLETKKIIEDNLEKSAMYSGTVKSIGPRYCPSFEDKAVRFREKDTHQIFIEPETLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K + 
Sbjct: 304 GDTWYVQGFSTSMPIEVQEMMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV 
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGVW 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y++E       LK +
Sbjct: 424 EPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDQEWNQYLIYVKEIEQAIKELKEI 483

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             T K  S  +I+ K   +       + YE +  P   I  L    P  +K  +  ++ +
Sbjct: 484 RFTPK--SQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSI 541

Query: 537 QIESSYAAYTG--RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            IE  +  Y    RQ+++ K +K E K+ IP D +YS +  L+ E K+KL  ++P N+ Q
Sbjct: 542 VIEIRFEGYVKKERQLVD-KLVKLERKK-IPLDINYSKVDNLATEAKDKLEKIRPLNIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ PA + +LL Y+KK
Sbjct: 600 ASRITGVNPADIQMLLFYLKK 620


>gi|315650201|ref|ZP_07903276.1| glucose inhibited division protein A [Eubacterium saburreum DSM
           3986]
 gi|315487558|gb|EFU77866.1| glucose inhibited division protein A [Eubacterium saburreum DSM
           3986]
          Length = 628

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/629 (41%), Positives = 370/629 (58%), Gaps = 25/629 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +I + YD++V+G GHAGCEAA  +A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 2   IIEKKYDIVVVGAGHAGCEAALASARLGLKTIIFTVSADSIAMMPCNPNIGGSSKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + 
Sbjct: 62  ELDALGGEMGKCIDKTFIQSKMLNASKGPAVHSLRAQADKQEYSKQMRKTLENTPNLTIC 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q E+     E NI   +            VVL TGT+L      G++    G  G   +N
Sbjct: 122 QKEITKLIIEDNICRGVESISGGKYYAKAVVLATGTYLNARCIYGEVAEYTGPNGLKSAN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
            L +S         R KTGTPAR+DG++I +   ++Q+ D  ++PFSF TD   +   Q+
Sbjct: 182 HLSDSLSDVGISLNRFKTGTPARVDGRSIDYTVMQEQYGDNPVVPFSFETDPDSVQKEQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +C +  TN  TH II ENI  S ++SG IK  GPRYCPSIEDK+V+F +++ HQIF+EPE
Sbjct: 242 KCYLAYTNEYTHEIIRENIDRSPLFSGAIKGTGPRYCPSIEDKVVKFPDKDRHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+ +Y +G+S++LPE++Q + IR+I G E  NI+R GYAIEYD I+ ++L  +LE +
Sbjct: 302 GLYTNEMYLSGLSSSLPEDVQDKMIRSIKGFENANIVRNGYAIEYDCIDARQLKDSLEFR 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQ NG++GYEEAA QGL+AGIN+A K    + +   R   YIGV+IDDL +K
Sbjct: 362 NLEGLFAAGQFNGSSGYEEAAVQGLMAGINAAMKVLGREPVIIGRDQGYIGVLIDDLVTK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSR+EYR+ LR DNAD RLT IG K+G I E+R          YN L    
Sbjct: 422 ESHEPYRMMTSRSEYRLLLRQDNADLRLTKIGYKVGLISEKR----------YNSLLEKE 471

Query: 479 KSL---VLTSKNLSSTSISFKQDGKTRTA----------YEFLSYPDFSIQNLFSICPDA 525
           K +   V   KN+   + S  QD   R             E +  P+ +      +  D 
Sbjct: 472 KQIANEVERLKNIHIGATSKVQDFLVRNGSTPLQTSANLAELIRRPELNYDLTAELDDDR 531

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +K    V +++ I   Y  Y  RQ  + K+ K  E + IP D DYS + +L  E  +KL 
Sbjct: 532 KKLRKDVRDQVNINIKYEGYIKRQESQVKQFKKLENKKIPPDIDYSKVNSLRIEAVQKLG 591

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++P ++ QAS+I G++PA + +LL+Y++
Sbjct: 592 KVRPSSVGQASRISGVSPADITVLLVYLE 620


>gi|266620967|ref|ZP_06113902.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium hathewayi DSM 13479]
 gi|288867389|gb|EFC99687.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium hathewayi DSM 13479]
          Length = 635

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/622 (41%), Positives = 384/622 (61%), Gaps = 11/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEESYDIVVVGAGHAGCEAALAAARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+  + + ++L + Q
Sbjct: 64  LDAMGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQNYSREMRNTLENTDHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E  +++ +     ++  C   VL TGT+L+     G +    G  G   +N 
Sbjct: 124 AEVTDIIVENGVLTGVKTFSGAVYHCKAAVLATGTYLKARCIYGDVSNATGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S  +   +  R KTGTPAR+D ++I + + E+QF D++++PFSF TD   I   Q+ 
Sbjct: 184 LTDSLKEHGIEMYRFKTGTPARVDKRSIDFSRMEEQFGDKKIVPFSFSTDPETIQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ +TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTSEKTHEIIRANLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++QH   RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQHAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLKATLEFKT 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N++ K    +     R+ +YIGV+IDDL +K 
Sbjct: 364 ISGLFSGGQFNGSSGYEEAAVQGFMAGVNASMKVLGRESFVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   +++ K +++ + + + +K
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLMGIGHEIGLVSD---EQYEKLLEKESAIETEIK 480

Query: 480 SLVLTSKNLSSTSISF-KQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L  T+   S     F +++G T      T  E +  P+ +   L  +     + S  VI
Sbjct: 481 RLESTNIGASKEVQEFLERNGSTLLKTGTTLAELIRRPELNYVMLTELDSKRPELSVDVI 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ  +  + K  E + +  DFDYSS+ +L  E  +KL + +P ++ 
Sbjct: 541 EQVDINIKYDGYIRRQKQQVAQYKKLENKKLDADFDYSSVKSLRKEAVQKLDLYRPMSIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+++++
Sbjct: 601 QASRISGVSPADISVLLVHLEQ 622


>gi|260061290|ref|YP_003194370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Robiginitalea biformata HTCC2501]
 gi|88785422|gb|EAR16591.1| glucose-inhibited division protein A [Robiginitalea biformata
           HTCC2501]
          Length = 624

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/626 (43%), Positives = 387/626 (61%), Gaps = 15/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAGCEAAA AA LG+ T L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 3   MFTEEYDVIVVGGGHAGCEAAAAAANLGSKTLLVTMNLQTIGQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D + IQF++LN  KGPA+  PRTQ DR    E +RL+++R     ++
Sbjct: 63  EIDALGGYSGIVSDRSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLSLER----TQH 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V+     ++ +  +       IR  +VVLT GTFL G+IHIG+ +   GR G+
Sbjct: 119 LDFYQEMVSDLIVSEDRVVGVRTSLGLEIRGRSVVLTNGTFLNGLIHIGEKQFGGGRAGE 178

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  +     +  FDTGR+KTGTP R+DG+++ + K   Q  D     FS++      R
Sbjct: 179 RAARGITEQLAEMGFDTGRMKTGTPPRVDGRSLDFSKMIPQPGDAEPGRFSYLDTPKLTR 238

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q EC +T T+ E H ++ME    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+E
Sbjct: 239 QRECHMTYTSPEVHELLMEGFDRSPMFNGRIQSIGPRYCPSIEDKIHRFKDKDRHQLFVE 298

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLE
Sbjct: 299 PEGWDTVEVYVNGFSTSLPEDVQFRALRSVAGFENVKFFRPGYAIEYDYFPPTQLRHTLE 358

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK I  L+ AGQINGTTGYEEAA+QGL+AGIN+  K N+ +     R ++YIGV+IDDL 
Sbjct: 359 TKLIENLYFAGQINGTTGYEEAASQGLMAGINAHLKLNEKEPFILRRDEAYIGVLIDDLI 418

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYRMFTSRAEYR  LR DNAD RLT    ++G   E R +   +   +   L  
Sbjct: 419 TKGTEEPYRMFTSRAEYRTLLRQDNADLRLTEKSFRMGLASEERMRAVEQKKAQSQDLVG 478

Query: 477 LLK--SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF---SICPDAR--KFS 529
             K  S V    N    ++  K   +    ++  S P   ++++    S+    R  +  
Sbjct: 479 FFKKTSFVPEEINPILETVGSKNVDQGDKLFKVFSRPQVQMEHMMQLESVSEYVRENQLG 538

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+E+ +IE  Y+ Y  ++   A +++  E   IP+ FDYS + +LS E +EKL  ++P
Sbjct: 539 QEVLEQAEIEVKYSGYIEKEKNNADKLQRLENVKIPEGFDYSQVKSLSYEAREKLGRIRP 598

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS++ G++P+ +++L++++ +
Sbjct: 599 ATLSQASRVSGVSPSDISVLMVFLNR 624


>gi|307748094|gb|ADN91364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Campylobacter jejuni subsp. jejuni M1]
          Length = 619

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 369/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSKNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFEDAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +N   RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENVILRLGKYGYDLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P      +  +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDNYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|189485614|ref|YP_001956555.1| glucose-inhibited cell division protein GidA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|205831570|sp|B1H0R2|MNMG_UNCTG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170287573|dbj|BAG14094.1| glucose-inhibited cell division protein GidA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 597

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/621 (40%), Positives = 365/621 (58%), Gaps = 49/621 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R Y+V V+G GHAGCEA+   A++G  T +IT    ++  M CNPA+GG+ KG +VRE
Sbjct: 1   MERKYNVAVVGAGHAGCEASLACARMGLKTLIITLNADSMARMPCNPAVGGIAKGQMVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G +GR+ D A +QF++LN  +GPAV  PR Q D+ELY + M + + +Q+NL+++Q
Sbjct: 61  IDAMGGEIGRITDRAVLQFKMLNSSRGPAVWSPRAQCDKELYSVLMSKSVQNQQNLEILQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      +   +  + +     I    VV+TTGTFL+G IH+GK+    GR  +  +  
Sbjct: 121 SEATSLTVKNGKVCGVKILTGETIEADAVVITTGTFLKGTIHLGKMHFNGGRFNEVSALY 180

Query: 182 LFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD----KITNR 236
           L  S ++      GR KT T  R++ ++I + K  +QF DE+ +PFS+ T     +   +
Sbjct: 181 LSKSLIEDCGLKLGRFKTTTTPRINSRSIDYSKMTEQFGDEKPVPFSYSTKVEEWRKNLK 240

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN  TH+I+ +N+  S+IY G++ S  PRYCPSIE+KI R+ E+  H +F+E
Sbjct: 241 QLSCWLTYTNPITHKIVSDNLGLSSIYIGEVNSKSPRYCPSIEEKIERYPEKTSHHVFVE 300

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG NT+ VY NG+ T LP  +Q Q I +I GLE   +IR GYAIEYDY +P ++  TLE
Sbjct: 301 PEGYNTNEVYLNGLYTGLPFNLQQQMINSIVGLENAKVIRYGYAIEYDYSSPLQIKKTLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK +  LFL GQINGTTGYEEAAAQG VAG+N+  K          R +SYIG+++DD+T
Sbjct: 361 TKTVKNLFLGGQINGTTGYEEAAAQGFVAGVNAGLKVLGKTPFILERNESYIGILVDDIT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG+ EPYRMFTSRAEYR+S+R DNAD RL   G  +G I ++  K+F  Y         
Sbjct: 421 TKGMDEPYRMFTSRAEYRLSIRNDNADLRLMDAGHSIGLISDKAYKKFELY--------- 471

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
                                    R A  F    + + +NL    PD    S   IE+ 
Sbjct: 472 -------------------------RKA--FTDICENNAENL----PDDEDLSPWSIEKA 500

Query: 537 Q----IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +    I   Y  Y   Q     ++K  + R IP+DFDY+ L +LS E K++L  ++P  +
Sbjct: 501 KEEVYIHKKYEGYIEIQNKMINKMKKSKDRKIPEDFDYNKLKSLSAETKQRLFEVRPQTI 560

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I  + P+ + +L +Y+
Sbjct: 561 GQASRICAIKPSDIAILTVYL 581


>gi|313892286|ref|ZP_07825879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister microaerophilus UPII 345-E]
 gi|313119424|gb|EFR42623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister microaerophilus UPII 345-E]
          Length = 624

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/616 (41%), Positives = 381/616 (61%), Gaps = 8/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA+LGA T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARLGARTLLFTISLENVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN+ KGPAV   R Q+D+  Y    +  + + +NL++ Q ++
Sbjct: 66  LGGQMGIAADETAIQMRMLNLGKGPAVYALRAQSDKGAYHRYFKSILENTDNLELKQAQI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ + + + R   V+L TGT+L   I +G+     G  G  PS  L  
Sbjct: 126 MDIVVEDGKCKGVITEFDEIYRSKAVILCTGTYLDSRIIVGEYMYTGGPNGMRPSVGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   D  R KTGTP+R+DG+++ +D  + +  D+    FSF++++      +C ++ 
Sbjct: 186 NLKKHGIDILRFKTGTPSRVDGRSLNYDHMKLEEGDKENHAFSFLSERKDRNIKDCYLSY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+I+ +N+  S IYSG I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNENTHKILRDNLHRSPIYSGKIHGVGARYCPSIEDKVVRFADKDKHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F++TIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLKTIPGFENVKVMRPAYAIEYDLLDPLQLYPTLEVIKMEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K    +    +R ++YIG +IDDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLMAGINAALKIQGKEPFILARHEAYIGTLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G K+G + E R K F +  +++      + +   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGYKIGLVNEERYKHFIERKRKFEEAMDYITTKRFT 485

Query: 485 SKNLSSTSISFKQDGKTRT-----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K     + + ++ G T       A + L  P+ + +++       ++F +  +E ++I 
Sbjct: 486 PK--EDVNKALEELGTTPLTTGIGADKILKRPEITYKDMVEKL-GCKEFDAEAVEEMEIT 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    K+ +  E + IP+D D+  L  +S E ++KL+ +KP +L QAS+I 
Sbjct: 543 VKYEGYITRQENAIKKAEKMENKKIPQDMDFMKLEGISIEARQKLTKIKPLSLGQASRIS 602

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA + +L++Y+KK
Sbjct: 603 GVSPADIAILMVYVKK 618


>gi|315606900|ref|ZP_07881907.1| glucose inhibited division protein A [Prevotella buccae ATCC 33574]
 gi|315251408|gb|EFU31390.1| glucose inhibited division protein A [Prevotella buccae ATCC 33574]
          Length = 623

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/622 (41%), Positives = 371/622 (59%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  AA +GA T LIT   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAATAAAHMGAHTCLITMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLDV Q +  
Sbjct: 65  GGQMGLVTDNTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTMLDRTDNLDVWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +        R  +V++T GTFL G++H+G+ KI  GR  +   +    S
Sbjct: 125 ELIVENGEAVGVTTIWGVAFRAKSVIVTAGTFLNGLMHVGRHKIEGGRCAEPAVHYFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ ++  E Q  D     FS+M  +   +Q+ C    T
Sbjct: 185 ITRHGIVSARMKTGTPVRIDKRSVHFEDMEIQQGDSGFHRFSYMGQERKLKQLPCWTCYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG NT+ +
Sbjct: 245 NGEVHEVLKGGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGENTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K +SGLF 
Sbjct: 305 YLNGFSSSMPLDIQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKILSGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QGLVAG+N+A   N  +    +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGLVAGVNAAIHCNGGEPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD+RLT     LG      +KR+  ++++   +  +++    T 
Sbjct: 425 MFTSRAEYRILLRQDDADSRLTKKAYNLGI---STRKRYDWWLEKKEAIERIIRFCEDTP 481

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
            N    +   +  G T         + ++ P+ ++QNL  I P  ++           + 
Sbjct: 482 INKEHINPQLEALGTTPLRAGCKLVDLVTRPNLTLQNLSEIIPSLKEILESPKNRKEEIT 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A ++   E   I   FDY++L  +S E ++KLS ++P  L 
Sbjct: 542 EAAEIKMKYKGYIDRERIVADKMHRLENIKIKGRFDYATLHEISTEGRQKLSSIEPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLLGR 623


>gi|41058586|gb|AAR99279.1| glucose-inhibited division protein A [Candidatus Blochmannia
           americanus]
          Length = 591

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/588 (46%), Positives = 361/588 (61%), Gaps = 17/588 (2%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNPA+GG+GKGHLV+EIDA+ G+M   AD AGIQFR+LN  KG AVR  R QAD+
Sbjct: 1   LGQMSCNPAVGGIGKGHLVKEIDAMGGVMAYAADKAGIQFRILNSSKGAAVRATRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST-VVLTTGTFLR 159
            LYR  ++  +  Q+ L +IQ  V     +KN I  +V+    M   ST VVLTTGTFL 
Sbjct: 61  ILYRQVIRSVLEYQKFLSIIQASVEDLIIDKNKIIGVVVPKIGMKFSSTSVVLTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G IHIG      GR GD  S+SL +  +K       RLKTGT  R+    I +     Q+
Sbjct: 121 GKIHIGMKNFSGGRAGDVESSSLLSERLKGLSLRVNRLKTGTSPRVHANGINFGSLIAQY 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSFM + +    Q+ C IT TN  TH I+  N+  S +Y+G IK   PRYCPS
Sbjct: 181 SDNPIPVFSFMGSTEQHPAQVPCYITHTNDNTHEIVRSNLYQSPMYTGLIKGRSPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDKI RF +R+ HQIFLEPEGL T  +Y NGIST+LP  +Q Q IR+I GLE V+IIRP
Sbjct: 241 IEDKITRFSDRDAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIRSIRGLENVHIIRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ +P++L  TLE+K +SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   +
Sbjct: 301 GYAIEYDFFDPRDLKLTLESKFVSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKE 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I 
Sbjct: 361 GWYPRRDQAYLGVLVDDLCTHGAEEPYRMFTSRAEYRLSLREDNADLRLTAIAQQLGLID 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLK--------SLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           + R K F    +     R  L+        S V+   N   T +  + +G+     E L 
Sbjct: 421 KTRWKAFCLKRENIEKERQRLRDTYIFPYSSDVVQLNNFLKTPLMREANGE-----ELLR 475

Query: 510 YPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            P+     L  +           + E+++I+  Y  Y   Q  E ++    E  L+P D 
Sbjct: 476 RPEIDYTKLSQLSTFGPFMLDRQIFEQIEIQIKYEGYIRHQQEEIEKYICNENTLLPTDI 535

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           D+  +  LS E+ +KL+  +P+++ QAS+I G+TPAA++ LL+++KK 
Sbjct: 536 DFKVVSGLSKEVIDKLNNCRPYSIGQASRISGITPAAISNLLVWLKKQ 583


>gi|260665205|ref|ZP_05866054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii SJ-7A-US]
 gi|260560942|gb|EEX26917.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii SJ-7A-US]
          Length = 634

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 362/617 (58%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASARMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRILNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQATVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G      +  L  +
Sbjct: 130 ELIVEDGVCHGVITNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDTEPRHFSFETKDEDYLKDQLSCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG NTD
Sbjct: 250 YTNETTHKIIRDNLDRAPMYTGVIEGVGPRYCPSIETKIVRFADKPRHQIFLEPEGKNTD 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 310 EYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNIKNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKSGFTLGRDEAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F    ++    ++L +   +
Sbjct: 430 YRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQEFED--KKATIKQTLAELYDI 487

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T           K  G++       A  FL  P  +I  +  +  +       V E+++I
Sbjct: 488 TIHPNDEVQAYLKSIGQSPLNAGLKASAFLRRPGVTIAAIEKLSGEKLNSDRYVREQVEI 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +I
Sbjct: 548 DVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAERI 607

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA + +L +YI++
Sbjct: 608 SGVNPADIAILTVYIQQ 624


>gi|218780478|ref|YP_002431796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761862|gb|ACL04328.1| glucose inhibited division protein A [Desulfatibacillum
           alkenivorans AK-01]
          Length = 628

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/623 (42%), Positives = 376/623 (60%), Gaps = 9/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD+IVIG GHAGCEAA  AA++G  T L T    ++  M C+P+IGG GKG LV+E+D
Sbjct: 3   KRYDIIVIGAGHAGCEAALAAARMGCKTLLTTIHLDSVAGMPCSPSIGGTGKGQLVKEVD 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M RV D   + +R LN +KGPAV+  RTQ D+ +Y   M++ +  Q NLD+ Q +
Sbjct: 63  ALGGAMARVTDRTAMSYRTLNTRKGPAVQSTRTQNDKHMYHQMMKQCVEDQPNLDLKQAK 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     + + ++ +V       +   V+L TGTFL GVIHIG   + AGR G+  S SL 
Sbjct: 123 INRLVLDGDRVAGVVDHFGYEYQAEAVILATGTFLSGVIHIGHKSMKAGRAGEFASYSLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M+  F  GR+KTGTPAR+   +I +   E+Q  +E   PFS  +       +     
Sbjct: 183 SHLMELGFAMGRMKTGTPARVAKDSIDFSCFEEQAGEENPRPFSLFSKASLLTPMSSFNG 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  THRII +N+  SA+Y G +K    RYCPS EDKIV+F ER  HQI LE EG++T 
Sbjct: 243 RTNERTHRIIRDNLSCSALYGGIVKGVSARYCPSFEDKIVKFPERESHQIILEHEGVHTR 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y +G+  ++P E+Q +  R+IPG+E+V I+RP YAIEYD+++P  L PTLETK + GL
Sbjct: 303 EIYVSGLGNSMPLEVQIKLYRSIPGMEQVEIMRPAYAIEYDFLHPTGLKPTLETKLVKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEA AQG+ AGIN+A K          R+++Y+ VM+DDL ++G  EP
Sbjct: 363 YAAGQINGTSGYEEAGAQGMWAGINAACKIQGRPPFLPDRSEAYMAVMVDDLVTRGTSEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF---AKYIQ-EYNFLRS-LL 478
           YRMFTSRAEYR+ LR DN D RL   G  LG I +   K      K IQ E + +RS ++
Sbjct: 423 YRMFTSRAEYRLMLREDNPDLRLMEYGHGLGLIDDDAFKDLIERKKQIQAELDRVRSTII 482

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K L   ++ L     +  ++         +         +  + P     +  V  +++I
Sbjct: 483 KPLPEVNQYLEDKGTAPLKEAAPLD--RLMKRVQLGYDAVEKLAPSPEPINPRVSRQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ E ++ +  E+  IP+ FD+ ++  LSNELK KL  LKP +L QAS++
Sbjct: 541 AIKYEGYIAKQLREIEKFREMERVRIPEGFDFEAVHGLSNELKAKLGALKPVSLGQASRM 600

Query: 599 EGMTPAALNLLLIYIK--KNTVK 619
           EG+TPAAL+ ++I++   KNT K
Sbjct: 601 EGITPAALSAVMIHLHQVKNTEK 623


>gi|254558110|ref|YP_003064527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum JDM1]
 gi|300769098|ref|ZP_07078987.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|254047037|gb|ACT63830.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum JDM1]
 gi|300493338|gb|EFK28517.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 636

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/623 (42%), Positives = 362/623 (58%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDGLIVEDGVCKGVITNTGARYSAKSVVLTTGTAARGKIIIGELMYSSGPNNSQPAMKLS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKIT-NRQIE 239
               +  F+  R KTGTP R+DG TI +  TE+Q  D     FSF T   D I    Q+ 
Sbjct: 190 GDLERLGFNLERFKTGTPPRVDGNTIDYSVTEEQPGDPEPHHFSFETKDADYIDLKHQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKKRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L  TLETK 
Sbjct: 310 RNTDEWYVQGLSTSMPEEVQQRILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKATLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG
Sbjct: 370 VKNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALDRGQFTLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    Q        L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTDKGRELGLIDDERYAAFEAKRQAIKNELDRLG 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDA-RKFSSLVIER 535
            + +   +  +  +     G+ +    A +FL  P+    +L    P A       +IE+
Sbjct: 490 KIRIKPNDEVNAFLRAHNSGELKDGVLAADFLKRPEVQYADLMKFIPAAPEPLERHIIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  +       +K  E + IP   DY ++  L+ E  +KL  ++P  + QA
Sbjct: 550 VEIQIKYAGYIQKAEERVDRLKKMEAKKIPDRIDYDAIDGLATEAHQKLKKIQPTTIAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA + +L +YI++  +
Sbjct: 610 SRISGVNPADIAILSVYIQQGRI 632


>gi|329121703|ref|ZP_08250320.1| glucose inhibited division protein A [Dialister micraerophilus DSM
           19965]
 gi|327468173|gb|EGF13659.1| glucose inhibited division protein A [Dialister micraerophilus DSM
           19965]
          Length = 624

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/616 (41%), Positives = 381/616 (61%), Gaps = 8/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA+LGA T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARLGARTLLFTISLENVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN+ KGPAV   R Q+D+  Y    +  + + +NL++ Q ++
Sbjct: 66  LGGQMGIAADETAIQMRMLNLGKGPAVYALRAQSDKGAYHRYFKSILENTDNLELKQAQI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ + + + R   V+L TGT+L   I +G+     G  G  PS  L  
Sbjct: 126 MDIVVEDGKCKGVITEFDEIYRSKAVILCTGTYLDSRIIVGEYMYTGGPNGMRPSVGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   D  R KTGTP+R+DG+++ +D  + +  D+    FSF++++      +C ++ 
Sbjct: 186 NLKKHGIDILRFKTGTPSRVDGRSLNYDHMKLEEGDKANHAFSFLSERKDRNIKDCYLSY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+I+ +N+  S IYSG I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNENTHKILRDNLHRSPIYSGKIHGVGARYCPSIEDKVVRFADKDKHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F++TIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLKTIPGFENVKVMRPAYAIEYDLLDPLQLYPTLEVIKMEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K    +    +R ++YIG +IDDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLMAGINAALKIQGKEPFILARHEAYIGTLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G K+G + E R K F +  +++      + +   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGYKIGLVNEERYKHFIERKRKFEEAMDYITTKRFT 485

Query: 485 SKNLSSTSISFKQDGKTRT-----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K     + + ++ G T       A + L  P+ + +++       ++F +  +E ++I 
Sbjct: 486 PK--EDVNKALEELGTTPLTTGIGADKILKRPEITYKDMVEKL-GCKEFDAEAVEEMEIT 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    K+ +  E + IP+D D+  L  +S E ++KL+ +KP +L QAS+I 
Sbjct: 543 VKYEGYITRQENAIKKAEKMENKKIPQDMDFMKLEGISIEARQKLTKIKPLSLGQASRIS 602

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA + +L++Y+KK
Sbjct: 603 GVSPADIAILMVYVKK 618


>gi|313665756|ref|YP_004047627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
 gi|312949569|gb|ADR24165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
          Length = 629

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/620 (41%), Positives = 376/620 (60%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I  QENLD+I    
Sbjct: 64  LGGEMGKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKKQENLDLITKAC 123

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            G  ++  KN+ + I ++D   +    V++TTGT+L+  I  G  +  +G   +  +  +
Sbjct: 124 TGLVYDDSKNV-TGIYLEDQITLNAKVVIITTGTYLKSEILKGVDRYESGPNNEKTTKGI 182

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             S +       R KTGTPAR+   ++   +   +   +  + FSF T+  T   +Q  C
Sbjct: 183 SKSLIDLGIKLMRFKTGTPARVYRDSVDLSRATIEPGTDMKLAFSFSTNTYTPIEQQQPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE L
Sbjct: 243 YLIHSTLETKKIIQDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPETL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K +
Sbjct: 303 NGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV
Sbjct: 363 KNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +   + +  Y++E       LK 
Sbjct: 423 WEPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDTEWEEYLSYVKEIEQAIKELKE 482

Query: 481 LVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +  T K+  + ++  K+        + YE +  P   I  L    P  ++  +  ++ + 
Sbjct: 483 IRFTPKSQLAINLKNKKQADLSHGYSGYEIIKIPTVDINELIEFIPSLQRLKTNQLQSIV 542

Query: 538 IESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           IE  +  Y  +  Q+++ K +K E K+ IP + +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 543 IEIRFEGYVKKECQLVD-KLVKLERKK-IPLNINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+ PA + +LL Y+KK
Sbjct: 601 SRITGVNPADIQMLLFYLKK 620


>gi|303234692|ref|ZP_07321320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna BVS033A4]
 gi|302494175|gb|EFL53953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna BVS033A4]
          Length = 627

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/618 (41%), Positives = 374/618 (60%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E+DAL
Sbjct: 10  YDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKEVDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+ EV 
Sbjct: 70  GGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIEAEVV 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  L +S
Sbjct: 130 DIGVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKKLSDS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                 +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  C +T
Sbjct: 190 LKNLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEHCYLT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEGL+T 
Sbjct: 250 YTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEGLSTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +I+ L
Sbjct: 310 EMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLEINNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG  EP
Sbjct: 370 FFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LKS+++
Sbjct: 430 YRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLKSIMV 489

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T      T+   ++ G +      T  + +  P+ +         D  +    +  RLQ+
Sbjct: 490 TPT--EETNEKLRKLGSSELKTGITLLDLIKRPELTYDKTEEFDADRPELPRYL--RLQV 545

Query: 539 ES--SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           E+   Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS
Sbjct: 546 ETHIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++P+ +N+LLIY++
Sbjct: 606 RISGVSPSDINVLLIYME 623


>gi|227878342|ref|ZP_03996299.1| glucose-inhibited division protein A [Lactobacillus crispatus
           JV-V01]
 gi|256849609|ref|ZP_05555041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus MV-1A-US]
 gi|312984012|ref|ZP_07791360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus CTV-05]
 gi|227862078|gb|EEJ69640.1| glucose-inhibited division protein A [Lactobacillus crispatus
           JV-V01]
 gi|256713725|gb|EEU28714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus MV-1A-US]
 gi|310894514|gb|EFQ43588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus CTV-05]
          Length = 634

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 363/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 12  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 72  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 132 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C +T
Sbjct: 192 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISCWMT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 252 YTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGKTTK 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 312 EVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 372 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I +   +RFA++ ++ + +      L  
Sbjct: 432 YRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISD---ERFARFEEKKHAIEDAKTRLHE 488

Query: 484 TSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + +L+     F Q  G+        A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YI+
Sbjct: 609 ISGVNPADLAILSVYIQ 625


>gi|256384192|gb|ACU78762.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385024|gb|ACU79593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455448|gb|ADH21683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 629

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 374/621 (60%), Gaps = 14/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I    
Sbjct: 64  LGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLITRAC 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   + N  ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  +  + 
Sbjct: 124 TGLVYDDNKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTKGIS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S +       R KTGTPAR+   ++       +   +  + FSF T+  T   +Q  C 
Sbjct: 184 KSLIDLGIKLMRFKTGTPARVYRDSVDLTNAVLEPGTDMKLAFSFSTNTYTPIEKQQPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE LN
Sbjct: 244 LIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPETLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K + 
Sbjct: 304 GDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVR 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV 
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLVNKGVW 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y+ E       LK +
Sbjct: 424 EPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDQEWNQYLIYVNEIEQAIKELKEI 483

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             T K  S  +I+ K   +       + YE +  P   I  L    P  +K  +  ++ +
Sbjct: 484 RFTPK--SQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSI 541

Query: 537 QIESSYAAYTG--RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            IE  +  Y    RQ+++ K +K E K+ IP D +YS +  L+ E K+KL  ++P N+ Q
Sbjct: 542 VIEIRFEGYVKKERQLVD-KLVKLERKK-IPLDINYSKVDNLATEAKDKLEKIRPLNIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ PA + +LL Y+KK
Sbjct: 600 ASRITGVNPADIQMLLFYLKK 620


>gi|262046277|ref|ZP_06019240.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus MV-3A-US]
 gi|260573607|gb|EEX30164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus MV-3A-US]
          Length = 632

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/617 (42%), Positives = 363/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGKTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 310 EVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I +   +RFA++ ++ + +      L  
Sbjct: 430 YRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISD---ERFARFEEKKHAIEDAKTRLHE 486

Query: 484 TSKNLSSTSISFKQD-GKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + +L+     F Q  G+        A  FL  P+ +I ++  +  +       V E+++
Sbjct: 487 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YI+
Sbjct: 607 ISGVNPADLAILSVYIQ 623


>gi|225377578|ref|ZP_03754799.1| hypothetical protein ROSEINA2194_03228 [Roseburia inulinivorans DSM
           16841]
 gi|225210554|gb|EEG92908.1| hypothetical protein ROSEINA2194_03228 [Roseburia inulinivorans DSM
           16841]
          Length = 645

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/620 (41%), Positives = 376/620 (60%), Gaps = 18/620 (2%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL G MG+
Sbjct: 19  GAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVREIDALGGEMGK 78

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
             D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q EV+   TE 
Sbjct: 79  NIDKTFIQSKMLNKSKGPAVHSLRAQADKMNYSMEMRKTLQNTDHLTIRQAEVSEIITET 138

Query: 132 NII---------SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             +         + +     ++  C  VVL TGT+L      G++    G  G   +N L
Sbjct: 139 TALENGKEIQKMTGVKTFSGAVYHCKAVVLCTGTYLCARCLTGEMITYTGPNGLQAANHL 198

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            +S  +   +  R KTGTPAR+D +++ + K ++Q  DER++PFSF T  + +   Q+ C
Sbjct: 199 TDSLKEHGIEMFRFKTGTPARIDKRSVDFSKMQEQKGDERVVPFSFTTNPEDVQIDQVSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F +++ HQIF+EPEG+
Sbjct: 259 WLTYTNEKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFADKDRHQIFIEPEGI 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y  G+S++LPE++QH+  RT+PGLE V I+R  YAIEYD INP +L+ TLE K I
Sbjct: 319 NTNEMYVGGMSSSLPEDVQHEMYRTLPGLEHVKIVRNAYAIEYDCINPNQLYATLEFKNI 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF  GQ NG++GYEEAA QGLVAGIN+A      + +   R+++YIGV+IDDL +K  
Sbjct: 379 KGLFSGGQFNGSSGYEEAACQGLVAGINAAMSILGKEPLILDRSEAYIGVLIDDLVTKEN 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLK 479
            EPYRM TSRAEYR+ LR DNAD RL+  G ++G I + R      K +   N +  +  
Sbjct: 439 HEPYRMMTSRAEYRLLLRQDNADLRLSKKGYEIGLISQERYDWICQKEVLIQNEIERVAG 498

Query: 480 SLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             +  +K + +   S+       G T T  E +  P+   + L  I  +  +    V+E+
Sbjct: 499 VKIGANKEVQALLESYGSIPLNTGTTLT--ELIRRPELDYEKLAPIDKERPELPYDVVEQ 556

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ+ + +  K  E + I +DFDY  +P+L  E ++KL + +P ++ QA
Sbjct: 557 VNINIKYDGYIVRQIKQVEHYKKLENKKIAEDFDYDEVPSLRIEARQKLKLYRPLSIGQA 616

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LL+Y+++
Sbjct: 617 SRISGVSPADISVLLVYMEQ 636


>gi|146298764|ref|YP_001193355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacterium johnsoniae UW101]
 gi|205831512|sp|A5FL86|MNMG_FLAJ1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146153182|gb|ABQ04036.1| glucose inhibited division protein A [Flavobacterium johnsoniae
           UW101]
          Length = 623

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/625 (43%), Positives = 385/625 (61%), Gaps = 16/625 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA LG+ T L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLEEYDVIVVGAGHAGSEAAAAAANLGSKTLLVTMSLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDALGGYSGIVSDRTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRMMLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E   I  I       IR  +VVLT GTFL G+IHIG+ +   GR G+S + 
Sbjct: 121 QEMVKGLIIENGKIKGIRTSLGVEIRSKSVVLTNGTFLNGLIHIGEKQFGGGRAGESAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQI 238
            +    +K  F+ GR+KTGTP R+DG+++ + K  ++  D +   FS+  +T  +T +Q 
Sbjct: 181 GITEDLVKAGFEAGRMKTGTPPRVDGRSLDYSKMNEEKGDAKPDKFSYSDLTKPLT-QQR 239

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T+L  H I+ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EPE
Sbjct: 240 SCYMTYTSLNVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKERHQLFVEPE 299

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST+LPE+IQ + +R++ G E V   RPGYAIEYDY  P +L  TLETK
Sbjct: 300 GWNTCEVYVNGFSTSLPEDIQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETK 359

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GL+ AGQINGTTGYEEAA+QGL+AGIN+  K ++   +   R ++YIGV+IDDL +K
Sbjct: 360 LVEGLYFAGQINGTTGYEEAASQGLMAGINAHLKVHEKAPLILKRDEAYIGVLIDDLITK 419

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR  LR DNAD RLTP+  ++G   E R +R    + E   + +  
Sbjct: 420 GTEEPYRMFTSRAEYRTLLRQDNADFRLTPMSFEIGLASEDRMRRMEHKLNESEKMVAFF 479

Query: 479 K--SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPDARKFSSL 531
           K  S+ +   N   +   S    Q  K    ++  S P   ++++  F       K ++L
Sbjct: 480 KETSVTVAETNPILIEKESAPISQGDKM---FKVFSRPQIELEDMLKFEKVDSYIKENNL 536

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E+  I+  Y+ Y  ++   A ++   E+  IP++FDY+ + ++S E K+KLS ++
Sbjct: 537 DEEIVEQAVIQVKYSGYIEKERNNADKLNRLEEVKIPENFDYNKIKSMSIEAKQKLSKIR 596

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P  + QAS+I G++P+ +++LLIY+
Sbjct: 597 PVTISQASRISGVSPSDISVLLIYM 621


>gi|295697831|ref|YP_003591069.1| glucose inhibited division protein A [Bacillus tusciae DSM 2912]
 gi|295413433|gb|ADG07925.1| glucose inhibited division protein A [Bacillus tusciae DSM 2912]
          Length = 628

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/614 (42%), Positives = 368/614 (59%), Gaps = 8/614 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAG EAA  AA+LG  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVVVVGAGHAGSEAALAAARLGCRTLLLTINVDAVAYMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD + IQ R+LN  KGPAVR  R QAD+ LY   M+  +     L + QG V 
Sbjct: 68  GGEMARNADRSHIQMRMLNTGKGPAVRALRAQADKVLYGRRMKEVLEYTPGLTLRQGLVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                      +     +      VVLTTGT+LRG + IG +   +G  G  P+ +L ++
Sbjct: 128 EILVRGGRAVGVRTNTGAEYLAQAVVLTTGTYLRGRVIIGDVSYSSGPAGQMPALALSDN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F   R KTGTP R++ ++I + K   Q  D++ + FS         Q+ C +T T
Sbjct: 188 LTDLGFQLVRFKTGTPPRVNRRSIDFTKLMVQPGDDQWLHFSHEERLPRRPQVPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH IIM+N+  + +YSG+IK  GPRYCPSIEDK+VRF +R  HQ+FLEPEGL T   
Sbjct: 248 NERTHAIIMDNLDRAPMYSGEIKGRGPRYCPSIEDKVVRFSDRPAHQVFLEPEGLFTAEW 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE+IQ + + TI GLE   I+RPGYAIEYD + P +L+PTLETK + GLF 
Sbjct: 308 YVQGMSTSLPEDIQVEMLHTIRGLENAEILRPGYAIEYDALVPTQLWPTLETKAVPGLFT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QG++AGIN+A K    + +  SR + YIGVMIDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGIIAGINAALKVLGREPLVLSRAEGYIGVMIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAE+R+ LR DNAD RL   G +LG + ER  +R  K  +        L    +  
Sbjct: 428 LLTSRAEHRLLLRHDNADLRLMEKGYRLGLVPEREYERLLKKRERIEEELDRLSGTRVRG 487

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +++ S     ++ G    +      + L  P+     + ++ P        V+E+++I  
Sbjct: 488 EDVESL---LRERGSAPVSGSVALDQLLRRPELDYSLVQAVAPPREALDPEVVEQVEIAV 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++    + ++  E++ IP+  DY  +  LS+E +EKLS+++P ++ QAS+I G
Sbjct: 545 KYAGYMAKEQQTIEHMRKMEEKRIPEGLDYGKVRGLSHEGREKLSLVQPRSVGQASRISG 604

Query: 601 MTPAALNLLLIYIK 614
           ++PA + +LL+Y++
Sbjct: 605 VSPADIAILLVYLE 618


>gi|331703909|ref|YP_004400596.1| tRNA uridine 5 carboxymethylaminomethyl modification enzyme
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802464|emb|CBW54619.1| tRNA uridine 5 carboxymethylaminomethyl modification enzyme
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 629

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 375/621 (60%), Gaps = 14/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I    
Sbjct: 64  LGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLITRAC 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   ++N  ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  +  + 
Sbjct: 124 TGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTKGIS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S +       R KTGTPAR+   ++       +   +  + FSF T+  T   +Q  C 
Sbjct: 184 KSLIDLGIKLMRFKTGTPARVYRDSVDLTNAVLEPGTDMKLAFSFSTNTYTPIEQQQLCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE LN
Sbjct: 244 LIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPETLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K + 
Sbjct: 304 GDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV 
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGVW 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +    ++  Y++E       LK +
Sbjct: 424 EPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDHEWNQYLIYVKEIEQAIKELKEI 483

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             T K  S  +I+ K   +       + YE +  P   I  L    P  +K  +  ++ +
Sbjct: 484 RFTPK--SQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSI 541

Query: 537 QIESSYAAYTG--RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            IE  +  Y    RQ+++ K +K E K+ IP D +YS +  L+ E K+KL  ++P N+ Q
Sbjct: 542 VIEIRFEGYVKKERQLVD-KLVKLERKK-IPLDINYSKVDNLATEAKDKLEKIRPLNIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ PA + +LL Y+KK
Sbjct: 600 ASRITGVNPADIQMLLFYLKK 620


>gi|301320718|gb|ADK69361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 629

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 374/621 (60%), Gaps = 14/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I    
Sbjct: 64  LGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLITRAC 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   ++N  ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  +  + 
Sbjct: 124 TGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTKGIS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S +       R KTGTPAR+   ++       +   +  + FSF T   T   +Q  C 
Sbjct: 184 QSLIDLGIKLMRFKTGTPARVYRDSVDLSNAVLEPGTDMKLAFSFSTSTYTPIEKQQPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK VRF E++ HQIF+EPE LN
Sbjct: 244 LIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKAVRFREKDTHQIFIEPETLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K + 
Sbjct: 304 GDTWYVQGFSTSMPIEVQEMMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV 
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGVW 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y++E       LK +
Sbjct: 424 EPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDQEWNQYLIYVKEIEQAIKELKEI 483

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             T K  S  +I+ K   +       + YE +  P   I  L    P  +K  +  ++ +
Sbjct: 484 RFTPK--SQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSI 541

Query: 537 QIESSYAAYTG--RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            IE  +  Y    RQ+++ K +K E K+ IP D +YS +  L+ E K+KL  ++P N+ Q
Sbjct: 542 VIEIRFEGYVKKERQLVD-KLVKLERKK-IPLDINYSKVDNLATEAKDKLEKIRPLNIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ PA + +LL Y+KK
Sbjct: 600 ASRITGVNPADIQMLLFYLKK 620


>gi|302510603|ref|XP_003017253.1| hypothetical protein ARB_04131 [Arthroderma benhamiae CBS 112371]
 gi|291180824|gb|EFE36608.1| hypothetical protein ARB_04131 [Arthroderma benhamiae CBS 112371]
          Length = 605

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/579 (43%), Positives = 353/579 (60%), Gaps = 23/579 (3%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELSNTPGL 60

Query: 118 DVIQGEVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++G+VA            N  +  I  + ++   MI    V++TTGTFL G IHIG  
Sbjct: 61  SIVEGKVADIVISKENIPSLNGSQGEIVGVKLESGEMIPTQKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 VFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFS 180

Query: 228 FMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           ++ D +      Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+R
Sbjct: 181 YLNDSVQIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIR 238

Query: 285 FGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           F ++  H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EY
Sbjct: 239 FKDKPRHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEY 298

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR
Sbjct: 299 DYVDPRSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSR 358

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            D +IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R ++
Sbjct: 359 ADGFIGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRQ 418

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F +  ++ ++L++LL++    S   S      + D   R+A+E LS+   S+ ++     
Sbjct: 419 FNETKEQMSYLQALLENTKYPSTVWSRKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIE 478

Query: 524 DA-------RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            A         FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  L
Sbjct: 479 SAPGTIHSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGL 538

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           S E ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 539 STEERQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 577


>gi|41058576|gb|AAR99272.1| glucose-inhibited division protein A [Candidatus Blochmannia
           chromaiodes]
          Length = 594

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/587 (47%), Positives = 365/587 (62%), Gaps = 15/587 (2%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QAD
Sbjct: 3   TLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQAD 62

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFL 158
           + LYR A++  +  Q+ L VIQ  V       N I  ++     M    ++VVLTTGTFL
Sbjct: 63  KILYRQAIRSILEYQKFLLVIQASVEDLIVSGNKIVGVITPKLGMKFSGTSVVLTTGTFL 122

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GDS S+SL +  +K       RLKTGT  R+  K I +     Q
Sbjct: 123 NGKIHIGMNNFRGGRSGDSESSSLLSERLKELSLQISRLKTGTSPRVHTKGINFGSLRAQ 182

Query: 218 FADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D+ +  FSF+ + K+   Q+ C IT TN +TH I+  N+  S +Y+G IK   PRYCP
Sbjct: 183 YSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIVRSNLYQSPMYTGLIKGIAPRYCP 242

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   IIR
Sbjct: 243 SIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMQMIKSIQGLENACIIR 302

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 303 PGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 362

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I
Sbjct: 363 EGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLI 422

Query: 457 GERRQKRFAKYIQEYNFLRSLLK--------SLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
            E R K F    +     R  L+        S V    N   T ++ + +G+       +
Sbjct: 423 DESRWKAFCCKRENIEKERQRLRNTYIFPYSSDVAQLNNFLKTPLTHETNGEDLLRRPEI 482

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +Y   S  + FS     R+    V E+++I+  Y  Y   Q  E K   + E  L+P D 
Sbjct: 483 NYKKLSQLSTFSPSILDRQ----VFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDI 538

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D++ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK
Sbjct: 539 DFNIVSGLSQEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKK 585


>gi|205356211|ref|ZP_03222977.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345816|gb|EDZ32453.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 619

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 368/618 (59%), Gaps = 15/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + ++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLHSVNGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           MFTSRAE+R+ LR +NA  RL   G  LG + E+       YIQ  N   +L K L  L 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYGLGLLSEQD----FTYIQ--NIANNLQKGLEFLL 475

Query: 485 SKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           SK  +          S+   +        + ++   F I+ L  + P         +  +
Sbjct: 476 SKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREI 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS
Sbjct: 536 LNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAAS 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAAL++L IYIK
Sbjct: 596 QISGITPAALDILQIYIK 613


>gi|154250326|ref|YP_001411151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fervidobacterium nodosum Rt17-B1]
 gi|205831510|sp|A7HNL1|MNMG_FERNB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154154262|gb|ABS61494.1| glucose inhibited division protein A [Fervidobacterium nodosum
           Rt17-B1]
          Length = 626

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 283/621 (45%), Positives = 376/621 (60%), Gaps = 19/621 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIV+GGGHAG EAA  +A++G  T LIT     IG  SCNPAIGG  KG +VREIDAL
Sbjct: 13  FEVIVVGGGHAGIEAAFASARMGFKTLLITGNPDNIGWASCNPAIGGSAKGIVVREIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   I  R+LN  KGPAV+  R Q D+  Y   M+R++  QENL +  G V 
Sbjct: 73  GGEMAKTTDETMINVRMLNTSKGPAVQALRAQIDKYSYSRTMKRKLEEQENLLIRYGIVE 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V           V+LTTGTFLRG I IG+  + AGRMGD  +  L NS
Sbjct: 133 EILVENGKVKGVVDSFGIDYMAKAVILTTGTFLRGKIFIGRETMEAGRMGDFSARGLTNS 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECGITR 244
            +K  F  GR KTGTPAR+  K+I + K  +Q  D++   FS F   K+  +   C +T 
Sbjct: 193 LIKLGFTVGRFKTGTPARVLKKSIDFSKMVRQDTDDKPWAFSHFNEPKVLEKDYPCWLTH 252

Query: 245 TNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           T  E+H+II + +  S +Y G++K   + GPRYCPSIEDK+V+F ER  HQIF+EPEG +
Sbjct: 253 TTPESHKIIRDYLIFSPLY-GEVKLIQAKGPRYCPSIEDKVVKF-ERESHQIFVEPEGKD 310

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y NG+ST+LP   Q + +RTIPGLE V I+RP YA+EYDYI+P +L+PTLE+K I 
Sbjct: 311 TQEYYLNGLSTSLPYAAQIKMLRTIPGLENVKIVRPAYAVEYDYIDPTQLYPTLESKIIE 370

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAAAQGL+AGIN+  K      I   R++SYIGVMIDDL +KGV 
Sbjct: 371 NLYFAGQINGTSGYEEAAAQGLIAGINAGLKLRGEKPIVLKRSESYIGVMIDDLVTKGVD 430

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ +SRAEYR+ LR DNA  RL   G ++G I    +  + K I   N ++  ++ L
Sbjct: 431 EPYRLLSSRAEYRLLLRHDNAHLRLAKYGYQVGLIP---RWFYDKIINLENNIKYHIERL 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYE------FLSYPDFSIQNLFSICPDARKFSSLVIER 535
                  SS+     Q   T    E       L  P+ S   L  + P+    +  VIE+
Sbjct: 488 ENVKVPASSSVNELLQSLGTTPLTEGTRLAKLLRRPEVSYNALKHLDPEPISDTD-VIEQ 546

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIP-KDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++I+  Y  Y    M+E  +I FEE   +P  +  +S +P LS E +EKL  +KP ++ Q
Sbjct: 547 IEIQLKYEGYIN-SMLEQVQI-FEEYENLPIVNVIFSEVPNLSTEAREKLEKIKPLSIGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPA +  LL YIKK
Sbjct: 605 ASRIPGVTPADILALLTYIKK 625


>gi|194467397|ref|ZP_03073384.1| glucose inhibited division protein A [Lactobacillus reuteri 100-23]
 gi|194454433|gb|EDX43330.1| glucose inhibited division protein A [Lactobacillus reuteri 100-23]
          Length = 647

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/623 (42%), Positives = 372/623 (59%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  DE    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKVVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + +   +R AK  ++   + + +K 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSD---ERLAKMEEKKRQVAAEIKR 495

Query: 481 LVLTSKNLSSTSIS--FKQDGKTR-----TAYEFLSYPDFSIQNLFSICP-DARKFSSLV 532
           L       S   ++   +  G  R      A + L  P F  Q L    P   ++    V
Sbjct: 496 LEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTLAEFIPVPEQELDRHV 555

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L
Sbjct: 556 IEQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETL 615

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G+ PA + +L +Y+++
Sbjct: 616 AQASRISGVNPADIAILSVYVRQ 638


>gi|288925946|ref|ZP_06419876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccae D17]
 gi|288337370|gb|EFC75726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccae D17]
          Length = 623

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/622 (42%), Positives = 371/622 (59%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  AA +GA T LIT   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAATAAAHMGAHTCLITMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLDV Q +  
Sbjct: 65  GGQMGLVTDNTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTMLDRTDNLDVWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +        R  +V++T GTFL G++H+G+ KI  GR  +   +    S
Sbjct: 125 ELIVENGEAVGVTTIWGVEFRAKSVIVTAGTFLNGLMHVGRHKIEGGRCAEPAVHYFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ ++  E Q  D     FS+M  +   +Q+ C    T
Sbjct: 185 ITRHGIVSARMKTGTPVRIDKRSVHFEDMEIQQGDSGFHRFSYMGQERKLKQLPCWTCYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG NT+ +
Sbjct: 245 NGEVHEVLKGGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGENTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K +SGLF 
Sbjct: 305 YLNGFSSSMPLDIQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKILSGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QGLVAG+N+A   N  +    +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGLVAGVNAAIHCNGGEPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD+RLT     LG I  R  KR+  ++++   +  ++     T 
Sbjct: 425 MFTSRAEYRILLRQDDADSRLTEKAYNLG-IATR--KRYDWWLEKKEAIERIISFCEDTP 481

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
            N    +   +  G T         + ++ P+ ++QNL  I P  ++           + 
Sbjct: 482 INKEHINPQLEALGTTPLRAGCKLVDLVTRPNLTLQNLSEIIPSLKEILESPKNRKEEIT 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A ++   E   I   FDY++L  +S E ++KLS ++P  L 
Sbjct: 542 EAAEIKMKYKGYIDRERIVADKMHRLENIKIKGRFDYATLHEISTEGRQKLSSIEPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLLGR 623


>gi|332299652|ref|YP_004441573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176715|gb|AEE12405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 638

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 376/627 (59%), Gaps = 23/627 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VREIDAL
Sbjct: 18  FDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G  G+++DAA IQ+R+LN  KGPA+  PR Q DR    EL+R  + R     + LD+ Q
Sbjct: 78  SGYTGQMSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDR----TDGLDLWQ 133

Query: 122 GEVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V    F  E N    +V Q       + VVLT GTFL G++H GK  IP GR+ +  S
Sbjct: 134 DFVVDIKFGAEDNK-HLVVTQLGMTFTAAKVVLTAGTFLGGLMHFGKTMIPGGRISEPAS 192

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
           + +    +       R+KTGTPAR+DG+++ W   E+Q  DE    FSF+  + +  RQ 
Sbjct: 193 HGITECLVAAGHHADRMKTGTPARIDGRSVDWSLVEEQPGDEEAGRFSFLPMQRSQLRQR 252

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLEPE
Sbjct: 253 SCYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLEPE 312

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+  Y NG S++LP +IQ + ++TIP L  V + RPGYAIEYD+ +P++L  TLE+K
Sbjct: 313 GEETNEYYLNGFSSSLPIDIQIRALQTIPALRDVQLYRPGYAIEYDFFDPRDLHHTLESK 372

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL +K
Sbjct: 373 LVPGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLVLRRDEAYIGVLIDDLVTK 432

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  +    L +L 
Sbjct: 433 GVDEPYRMFTSRAEYRILLRQDNADLRLTPYAEQLGLATAERLSRLEQIKEGIATLDNLC 492

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSL--- 531
            +  +  + ++    S  +   D  T+     L  P  S+  L +     A + + L   
Sbjct: 493 ANYSVKPEEVNGYLASLGEKPLDFGTKLT-TLLLRPHVSLSGLIAQLDGFATQVAGLIGD 551

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++ R +    Y  Y  R+   A+++   E  ++    DY  + AL  E +EKLS ++
Sbjct: 552 DEEILTRTETAIKYRGYIEREEQAAQKLHRLESLMLGDKLDYQQISALPIEAREKLSRIR 611

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA++I G++P+ +N+LL+ + +
Sbjct: 612 PATIAQAARIPGISPSDINILLVLLGR 638


>gi|108758960|ref|YP_635597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Myxococcus xanthus DK 1622]
 gi|123247073|sp|Q1CVH6|MNMG_MYXXD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|108462840|gb|ABF88025.1| glucose inhibited division protein A [Myxococcus xanthus DK 1622]
          Length = 615

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/621 (42%), Positives = 368/621 (59%), Gaps = 30/621 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA   A++G +T  +T K      +SCNPA+GG  KGHLVRE+DAL
Sbjct: 5   YDVIVVGLGHAGSEAALACARMGLATLGLTLKRERSAVLSCNPAVGGTAKGHLVRELDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR AD  G  F+ LN  KGPAV+  R   DR+ Y + MQ  + SQ NL V +GEVA
Sbjct: 65  GGEMGRAADQVGTHFKTLNASKGPAVQASRLLCDRDAYAVGMQAVLFSQPNLTVREGEVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  +V+ D + +  S V+LTTGTFL+ ++H+G+ K   GR+GD  +  L  S
Sbjct: 125 ALVAGGGRVEGVVLGDGTQVSASAVLLTTGTFLQALMHVGEQKEVGGRLGDDAARGLSES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-------RQ- 237
                F  GR KTGTPARL   +I WD  E Q  D R+ PFS+ T K+         RQ 
Sbjct: 185 LRALGFTLGRFKTGTPARLARASIDWDALEPQPGDTRVRPFSWRT-KVEGEGGMPFPRQP 243

Query: 238 -IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
            + C +T T   TH ++ +N+  S +Y GDI   GPRYCPS+EDK+VRF  R  HQ+FLE
Sbjct: 244 SVTCALTETTPRTHAVLRDNLHRSPLYQGDIVGRGPRYCPSLEDKVVRFASRERHQVFLE 303

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG  + +VYP G+ST+LP ++Q  F+ TI GLE+V ++R GYA+EYDY  P +L  TLE
Sbjct: 304 PEGPTSPLVYPAGLSTSLPADVQLTFLHTIRGLEQVEVVRFGYAVEYDYAPPTQLKATLE 363

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK I+GL+ AGQ+NGT+GYEEAA QGL AGIN+A +      +   R +++  V++DDL 
Sbjct: 364 TKAIAGLYFAGQLNGTSGYEEAAFQGLWAGINAALQLKGEPPLLPGRDEAHGAVLVDDLV 423

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EP+RMFTSR+E+R+ LR  NAD RL   G ++G +     +R     +      +
Sbjct: 424 TKGVDEPFRMFTSRSEHRLKLREGNADLRLARHGHRVGLLPREALERVEARGRAVTEEVA 483

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            LK   L ++ L    +++ Q G+ R  +  LS PD + +    +     K+   V +  
Sbjct: 484 RLKRTGLAAR-LRRPEVTYAQLGEGREDWPVLS-PDVAEEVEVEV-----KYEGYVAQAA 536

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +  +  A  T R               IP+ + +  +  LS+E  EKL+  +P  + QA 
Sbjct: 537 RAAAREAESTDRWR-------------IPEGYCFHEVRGLSSEAVEKLTAHRPGTVGQAR 583

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+TPAA++LLL+ +K+ T
Sbjct: 584 RIPGLTPAAVSLLLVALKRGT 604


>gi|326334829|ref|ZP_08201031.1| glucose inhibited division protein A [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693008|gb|EGD34945.1| glucose inhibited division protein A [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 619

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/620 (44%), Positives = 377/620 (60%), Gaps = 16/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAAA AA  GA T LI+ +   +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 2   YDVIVVGAGHAGCEAAAAAANTGAKTLLISMQLQNMAQMSCNPAVGGIAKGQIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++    NLD  Q  V 
Sbjct: 62  GGYMGIITDQTAIQFKMLNKSKGPAMWSPRAQSDRMRFSEAWRLQLEKLPNLDFFQEMVC 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +     S+I   +VVLT GTFL GVIH+G   +  GR+G+  +  +  S
Sbjct: 122 EVLIEHNKVIGVKTSLGSIIHSKSVVLTNGTFLNGVIHVGLKHLSGGRVGEKAAKGITES 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITR 244
            +   F+ GR+KTGTP R+DG+++ + K   Q  DE    FSF+   K    Q++C +T 
Sbjct: 182 LVAHGFEAGRMKTGTPPRVDGRSLDYSKMTPQPGDENPEKFSFLPITKPLIHQLDCYMTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ + H I+      S +++G I   GPRYCPSIEDKI RF +++ HQ+F+EPEG +T  
Sbjct: 242 TSEQVHDILRTGFDRSPMFTGLIHGVGPRYCPSIEDKINRFADKDHHQLFIEPEGWHTVE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG ST+LPEEIQ++ +R + G E V   RPGYAIEYDY  P +L  TLETK +  LF
Sbjct: 302 MYVNGFSTSLPEEIQYEALRKVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLVENLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++RK  +       R ++YIGV+IDDL +KG  EPY
Sbjct: 362 FAGQINGTTGYEEAGAQGLMAGINASRKVQEQSPFVLKRNEAYIGVLIDDLITKGTEEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR  LR DNAD RLTP+G  LG   E R +   +   +        K   +T
Sbjct: 422 RMFTSRAEYRTLLRQDNADARLTPMGYALGLASEERMRLLEEKQAKTQAFVQFFKDTSIT 481

Query: 485 SKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVI 533
            +  +       S S KQ  K     + L+ P+ ++ +L  I P  ++F          +
Sbjct: 482 PEQANPILEKYDSSSMKQGDKMA---KVLARPNITVASLMEI-PSVKEFVQRKQLGKEEL 537

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +IE  YA Y  ++   A ++   E   IP++F+Y  L +LS E +EKL  ++P +L 
Sbjct: 538 ESTEIEIKYAGYIEKEKNNADKLNRLEDIRIPENFNYDKLTSLSFESREKLKKIRPTSLS 597

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA +++LLIY+
Sbjct: 598 QASRISGVSPADISILLIYM 617


>gi|4680645|gb|AAD27712.1|AF132937_1 CGI-02 protein [Homo sapiens]
          Length = 618

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/592 (44%), Positives = 378/592 (63%), Gaps = 25/592 (4%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V           +T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +  +   Q+ C +T TN     I+++N++ ++      +  GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLQLNSHVKETTR--GP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 298 KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 357

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 358 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 417

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEF 507
             GC+ ++R +R            S+LKS+   S    K +   SIS  +    R A + 
Sbjct: 418 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDV 476

Query: 508 LSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +
Sbjct: 477 LKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQL 536

Query: 565 PKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 537 PKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 588


>gi|238855501|ref|ZP_04645806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 269-3]
 gi|282931527|ref|ZP_06337026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|238831867|gb|EEQ24199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 269-3]
 gi|281304334|gb|EFA96437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
          Length = 634

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 362/617 (58%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASARMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRILNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQATVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G      +  L  +
Sbjct: 130 ELIVEDGVCHGVITNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDTEPRHFSFETKDEDYLKDQLSCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG NTD
Sbjct: 250 YTNETTHKIIRDNLDRAPMYTGVIEGVGPRYCPSIETKIVRFADKPRHQIFLEPEGKNTD 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 310 EYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNIKNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKSGFTLGRDEAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F    ++    ++L +   +
Sbjct: 430 YRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQEFED--KKATIKQTLAELYDI 487

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T           K  G++       A  FL  P  +I  +  +  +       V E+++I
Sbjct: 488 TIHPNDEVQAYLKSIGQSPLNAGLKASAFLRRPGVTIVAIEKLSGEKLNSDRYVREQVEI 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +I
Sbjct: 548 DVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAERI 607

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA + +L +YI++
Sbjct: 608 SGVNPADIAILTVYIQQ 624


>gi|282880577|ref|ZP_06289284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305680|gb|EFA97733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella timonensis CRIS 5C-B1]
          Length = 623

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/622 (41%), Positives = 369/622 (59%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA+LGA T L+T   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAAQLGAKTCLVTMDMNKIAQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + DA  IQFR+LN  KGPAV  PR Q DR  Y L  +  +    NLD+ Q E  
Sbjct: 65  GGHMGMITDATSIQFRMLNKGKGPAVWSPRAQCDRSKYILEWRTVLDHTPNLDIWQDEAC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T  + ++ +       +   ++++T GTFL G++HIG+ K+P GR  +     L  S
Sbjct: 125 ELLTANSEVTGVRTVWGVELYAKSIIITAGTFLNGLMHIGRKKLPGGRCAEPAVYHLSES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      R+KTGTP R+D +++ ++  E Q  +     FS+M+     +Q+ C    T
Sbjct: 185 IAQHGITVQRMKTGTPVRIDARSVHFEDMEVQDGENDFHQFSYMSGSRNLKQLPCWTCYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             E+H ++ + +  S +++G I+S GPRYCPS+E K+V F +++ H +FLEPEG NT+ +
Sbjct: 245 TPESHEVLRKGLPDSPLFNGQIQSTGPRYCPSVETKLVTFPDKDRHPLFLEPEGENTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P  IQ + +R IP   +  I R GYAIEYDY +P +L P+LE+K + GLF 
Sbjct: 305 YLNGFSSSMPLNIQIEALRQIPAFREAKIYRAGYAIEYDYFDPTQLKPSLESKIVKGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEAA QG+VAGIN+A      D     R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAAGQGIVAGINAAIHCFGGDPFVMKRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    +LG     ++ RF  + Q+   +  L+     TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEKAYQLGLA---KRDRFDWWTQKKESISHLMDYCNNTS 481

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDAR-------KFSSLVI 533
                 +   +++G +         E ++ P  SIQ L  + P             S +I
Sbjct: 482 IKPKEINEMLERNGTSTLRMGCKISELIARPQISIQLLAEMIPSLSDEICKIPNRKSEII 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A+++   E   I   FDY  L  LS E ++KL  + P  L 
Sbjct: 542 EATEIKIKYKGYIEREKIIAEKMHRLENIRIQDRFDYDQLHELSTEARQKLKRINPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           +AS+I G++P+ +N+LL+ + +
Sbjct: 602 KASRIPGVSPSDINVLLVLLGR 623


>gi|298372104|ref|ZP_06982094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275008|gb|EFI16559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 625

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/631 (42%), Positives = 375/631 (59%), Gaps = 29/631 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GH+GCEAAA A+ LG+   L+T   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   SYDIIVIGAGHSGCEAAAAASNLGSKVLLLTMDMNNIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGE 123
           L G MG V D   IQFR+LN  KG A+  PR+Q+DR  Y +   RE+L S  NLD+ Q  
Sbjct: 64  LGGYMGIVTDDTSIQFRMLNRSKGAAMWSPRSQSDRAKY-IQRWRELLDSCPNLDIRQDV 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +  +  +         V+LT+GTFL G++H GK+++  GR+ ++ S  L 
Sbjct: 123 VTEFIIKDGTVQGVKTRLMCEFGAKCVILTSGTFLNGLMHFGKIQVAGGRISETASYGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGI 242
               +  F TGR+KTGTP R++G +I + +  +Q  ++    FSF+   K T RQ  C +
Sbjct: 183 EQLREVGFVTGRMKTGTPLRINGNSIDFSRLTQQNGEDDFHKFSFLVRGKNTLRQRPCYL 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH I+  +I  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+F+EPEG  T
Sbjct: 243 THTNTRTHEILNRHIDESPLYNGQIQSIGPRYCPSIETKIVTFADKTSHQLFIEPEGETT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP E+Q + + TI GLE+  I RPGYAIEYDY +P +L  TLETK +  
Sbjct: 303 QEYYLNGFSSSLPIEVQLEALHTIEGLEQARIYRPGYAIEYDYFDPVQLKNTLETKLVKN 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAA QGL+AGIN+             R ++YIGV+IDDLT+KGV E
Sbjct: 363 LFFAGQVNGTTGYEEAAGQGLIAGINAHINCFGGKEFVLRRDEAYIGVLIDDLTTKGVDE 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR----------FAKYIQEYN 472
           PYRMFTSR+EYRI LR D+AD+RLT     LG     R+K              Y ++ +
Sbjct: 423 PYRMFTSRSEYRIILRQDSADSRLTRKSFDLGLATTERKKLLDVKNDNIDGLLSYFKQRS 482

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            L + +  L+   +   +T IS     K    Y+ L  P+ +I  +    PD R+ +  V
Sbjct: 483 VLPAEINGLL---EKTGATPIS-----KKTKLYDLLLRPNITIGAMCETLPDVREQADKV 534

Query: 533 --------IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                   +E  +I   Y  Y  R+ + A +    E   IP++ +Y  + +LS E ++KL
Sbjct: 535 DQSRVEEILEEAEIVVKYGGYIDRERLIANKTNRLEYVNIPQEINYDDIQSLSTEARQKL 594

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
               P  + QAS+I G++P+ +N+L++ + +
Sbjct: 595 KKHLPQTIGQASRIPGVSPSDINVLIVMLGR 625


>gi|169825320|ref|YP_001692931.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Finegoldia magna ATCC 29328]
 gi|205831511|sp|B0S3V1|MNMG_FINM2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167832125|dbj|BAG09041.1| glucose inhibited division protein A [Finegoldia magna ATCC 29328]
          Length = 627

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E+DAL
Sbjct: 10  YDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKEVDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+ EV 
Sbjct: 70  GGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIEAEVV 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  L  S
Sbjct: 130 DIEVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKKLSYS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                 +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  C +T
Sbjct: 190 LKNLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEHCYLT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEGL+T 
Sbjct: 250 YTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEGLSTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +I+ L
Sbjct: 310 EMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLEINNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG  EP
Sbjct: 370 FFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LKS+++
Sbjct: 430 YRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLKSIMV 489

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSY---PDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    ++  +      + +T    L     P+ +         DA +       RLQ+E+
Sbjct: 490 TPTEETNEKLRNLGSSELKTGITLLDLIKRPELTYDKTEEF--DAERTELPRYLRLQVET 547

Query: 541 --SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS+I
Sbjct: 548 HIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G++P+ +N+LLIY++
Sbjct: 608 SGVSPSDINVLLIYME 623


>gi|304383737|ref|ZP_07366196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella marshii DSM 16973]
 gi|304335261|gb|EFM01532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella marshii DSM 16973]
          Length = 623

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 366/620 (59%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  +A +GA+T LIT   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATASANMGATTCLITMDMNKIAQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGEV 124
            G MG V DA  IQFR+LN  KGPA+  PR Q DRE + +   R IL    NLD+ Q + 
Sbjct: 65  GGQMGLVTDATAIQFRMLNRSKGPAMWSPRAQCDRERF-IWEWRSILDHTPNLDIWQDQA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +    +     + +   ++V+T GTFL GV+HIGK ++  GR+ +        
Sbjct: 124 EELIVKNHTAVGVRTMWGAEMFAKSIVITAGTFLNGVMHIGKTQVQGGRLAEPAVLKFSE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR+KTGTP RLD ++I ++ TE Q  +     FSF+       Q+ C    
Sbjct: 184 SITQHGIRKGRMKTGTPVRLDKRSIHFEDTEIQKGESDFHQFSFIGKPRKLNQLPCWTFY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ++H ++   +K S +Y+G I+S GPRYCPSIE K++ F ++  H +FLEPEG  T+ 
Sbjct: 244 TTPQSHEVLRLGLKDSPLYNGQIQSIGPRYCPSIETKLITFPDKQQHPLFLEPEGETTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P E+Q + +  IP L +  I RPGYAIEYDY +P +L  +LE+K ISGLF
Sbjct: 304 MYLNGFSSSMPMEVQIEALHQIPALREAKIYRPGYAIEYDYFDPIQLTHSLESKVISGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGLVAGIN+A   N        R +SYIGV+IDDL +KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGLVAGINAAIHCNNGTPFIMHRDESYIGVLIDDLVTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT     LG     R   + +  +    + S  +   L 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTERAYHLGIAKRERYDYWQEKRENIQKILSFCEKTSLK 483

Query: 485 SKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICPD-------ARKFSSLVIER 535
           +K+++S           R+A   + ++ P  S+  + SI P+        +     +IE 
Sbjct: 484 AKDINSALERIGTTPIQRSAKIIDLIARPQVSLNAIGSIIPELNDILNAPKNRKEEIIEA 543

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y  Y  R+ I A+++   E   I   F+Y  +  L+ E ++KL  + P  L QA
Sbjct: 544 TEIQIKYRGYVERERIIAEKMHRLENIKIKDRFNYMEMNQLATEARQKLQNINPETLAQA 603

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +N+LL+ + +
Sbjct: 604 SRIPGVSPSDINVLLVLLGR 623


>gi|284040354|ref|YP_003390284.1| glucose inhibited division protein A [Spirosoma linguale DSM 74]
 gi|283819647|gb|ADB41485.1| glucose inhibited division protein A [Spirosoma linguale DSM 74]
          Length = 620

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/620 (42%), Positives = 360/620 (58%), Gaps = 12/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA +G+   LIT    TI  MSCNPA+GG+ KG +VRE+DA
Sbjct: 4   SYDVIVVGAGHAGCEAANAAATMGSKVLLITMNMQTIAQMSCNPAMGGVAKGQIVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GL G ++D + IQFR+LN  KGPA+  PR Q+DR ++    ++ +    N+D  Q  V
Sbjct: 64  LGGLSGIISDKSMIQFRMLNRSKGPAMWSPRCQSDRNVFAWEWRKALEENHNVDFWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    + N +  +            VVLT GTFL G + IG+     GR  +  +  L  
Sbjct: 124 SEVIVKDNRVKGVKTSLGVEFSAKAVVLTNGTFLNGQMFIGEKVFGGGRTAERSATGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +   F+ GR+KTGTP R+DG+++ +   E+Q  DE    FS+       +Q  C IT 
Sbjct: 184 QLVHLGFEAGRMKTGTPPRVDGRSLNYALMEEQLGDENPGKFSYTNTPALTKQRSCWITY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   H  +      S +++G IK  GPRYCPS+EDKI RF +++ HQIF+EPEG +T  
Sbjct: 244 TNQAVHDELKTGFDKSPMFTGRIKGLGPRYCPSVEDKINRFADKDRHQIFVEPEGWDTVE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NG ST+LPE +Q+  +R I G E V + RPGYA+EYD+  P +L PTLET+ +  LF
Sbjct: 304 VYVNGFSTSLPETVQYNALRKIQGFENVRMFRPGYAVEYDFFPPTQLKPTLETQLVQNLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QGL+AGIN+ R S++       R++ YIGV+IDDL +KG  EPY
Sbjct: 364 FAGQINGTTGYEEAACQGLMAGINAHRNSHEEAEFTIKRSEGYIGVLIDDLITKGTEEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR  LR DNAD RLT  G     IG   Q+R+   + +   +  L +++  T
Sbjct: 424 RMFTSRAEYRTLLRQDNADLRLTEKGY---AIGLASQERYETMLAKREGIAKLTETIRAT 480

Query: 485 SKNLSSTSISFKQDG-----KTRTAYEFLSYPDF---SIQNLFSICPD-ARKFSSLVIER 535
                  +   +  G     +  + Y  L  P+     ++ + S  PD         IE+
Sbjct: 481 KVKPEEINTFLESKGSAPLREKGSLYTLLKRPEIDQSDVKGILSSLPDMPNGVGEETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             IE  Y  Y  R+   A ++   E   I   FDY  L ALS E KEKL  L+P  + QA
Sbjct: 541 TVIEIKYEDYLNREKQNADKLDKWENLSINPTFDYDRLKALSFEGKEKLKRLRPSTIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++LL+Y+ +
Sbjct: 601 SRISGVSPSDVSILLVYMGR 620


>gi|160932435|ref|ZP_02079825.1| hypothetical protein CLOLEP_01270 [Clostridium leptum DSM 753]
 gi|156868394|gb|EDO61766.1| hypothetical protein CLOLEP_01270 [Clostridium leptum DSM 753]
          Length = 626

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/615 (42%), Positives = 377/615 (61%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAG EAA  AA+LG  TA+ T     +G+  CNP+IGG  KGHLVREIDAL
Sbjct: 8   YDVVVIGAGHAGIEAALAAARLGCKTAVFTINMDAVGNCPCNPSIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD   +Q R+LN  KGPAV   R Q DR  Y   M+ ++  QENLD+ QGE+ 
Sbjct: 68  GGEMGKTADQCLLQMRMLNRGKGPAVHSLRAQIDRRKYSEVMKHKLELQENLDLRQGEIT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 +     V + N++     V++ TGT+L G I++G++   +G  G  P+  L  S
Sbjct: 128 EIRRLGDDRWQAVTRMNAVFEAKAVIVATGTYLGGRIYVGEVSYESGPDGTFPAAFLGKS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      R KTGTPAR+   +I +   ++Q  ++ +IPFS+ T +    +  C I+ T
Sbjct: 188 LKELGLRLRRFKTGTPARVLKSSIDFSGLQEQPGEDPVIPFSYDTAEPLKNKAVCHISWT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +T +II+ENI  S +Y G I+  GPRYCPS+EDKIVRF ++  HQ+F+EP G NT+ +
Sbjct: 248 NEKTKQIILENIHRSPLYGGKIEGVGPRYCPSLEDKIVRFADKERHQLFIEPCGENTEEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPEE+Q QF  +I GLE   ++R  YAIEYD ++P ++  TLE     GL+ 
Sbjct: 308 YLQGMSSSLPEEVQLQFYHSIKGLEHCLVMRCAYAIEYDCVDPLQMAATLEFMDYPGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NG++GYEEAAAQGLVAG+N+A K    + +   R  SYIG +IDDL +KGV +PYR
Sbjct: 368 AGQFNGSSGYEEAAAQGLVAGMNAALKIKGREQVVLDRASSYIGTLIDDLVTKGVEDPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ-EYNFLRSLLKSLVLT 484
           M TSR+EYR+ LR DNAD RLTP+G ++G I + R  RF +  + +   L  L K+ +  
Sbjct: 428 MMTSRSEYRLVLRQDNADERLTPLGREIGLISDSRWNRFVEKQELKRKELNRLKKTSLPP 487

Query: 485 SKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K L+   +S ++     T     E L  P      L  +          + E++++E  
Sbjct: 488 TKELNEILVS-RETSPVETGIRLLELLKRPQVDYACLAPVDTTRPDLDPNIFEQVEVEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +  E++  E + +PK+ DY  +  +S+E +EKL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIRRQKSQIDEMRRLEGKRLPKELDYQEIHGISSEAQEKLNRVRPGNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKN 616
           +PA +++LLI++ +N
Sbjct: 607 SPADISVLLIWLSQN 621


>gi|226315526|ref|YP_002775422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevibacillus brevis NBRC 100599]
 gi|226098476|dbj|BAH46918.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Brevibacillus brevis NBRC 100599]
          Length = 632

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/629 (42%), Positives = 380/629 (60%), Gaps = 18/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIG GHAG EAA  AA++G ST L+T     +  M CNP++GG  KGH+VRE+DA
Sbjct: 11  SFDVIVIGAGHAGAEAALAAARMGCSTLLLTINLDAVAYMPCNPSVGGPAKGHVVRELDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M++ I +  NL + Q  V
Sbjct: 71  LGGEMGRNTDKTHIQMRMLNTGKGPAVHALRAQADKFAYQHEMKKTIENTPNLILRQAMV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +   ++ Q  +     +VVLTTGT+LRG I +G L+  +G     PS  L +
Sbjct: 131 EELIVNDGVCEGVITQTGARYMAKSVVLTTGTYLRGKIILGDLQYESGPNNMRPSIRLAH 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   ++ + K E Q  D     FS+ T +    Q+ C +T 
Sbjct: 191 HLKELGFEMTRFKTGTPPRVHSSSVDFSKMEIQPGDPVPRAFSYETTEFIMDQLPCWLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH +I  N+  + +YSG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT+ 
Sbjct: 251 TNEETHGLINSNLHRAPMYSGMIEGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTEE 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q   +R++ G+E+V ++RPGYAIEYD I P +L+P+LETK + GLF
Sbjct: 311 MYVQGLSTSLPEDVQLSMLRSMAGMEEVKMMRPGYAIEYDSIVPTQLWPSLETKTLPGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+AR+      +   R ++YIGV+IDDL +KG  EPY
Sbjct: 371 TAGQINGTSGYEEAAGQGLMAGINAARRVQGKPPVILGRDEAYIGVLIDDLVTKGTHEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL---KSL 481
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF       N  R L+   K  
Sbjct: 431 RLLTSRAEYRLLLRHDNADLRLTDIGHEIGLISEERYHRF-------NQKRELIEQEKER 483

Query: 482 VLTSK---NLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           V  ++    ++      +  G           + L  P+ +  ++  + P        V 
Sbjct: 484 VANTRVRPEMAHVQEVLRNAGSPELTDVIELAQLLRRPEINYSHIAQMVPAPEALPEDVT 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  Y  Y  + + + + +K  E+R IP D DY  +  LS E ++ ++ ++P N+ 
Sbjct: 544 EQVEIQIKYDGYIKKSLQQVERMKKMEERRIPTDIDYHQISGLSKESRDNMTKIRPLNIG 603

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           QA++I G+TPA +++L++Y++   V + E
Sbjct: 604 QAARIAGVTPADISVLMVYLEYKRVGVAE 632


>gi|228472157|ref|ZP_04056923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276360|gb|EEK15084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 619

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/622 (44%), Positives = 378/622 (60%), Gaps = 16/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAAA AA  GA T LIT +   +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 2   YDVIVVGAGHAGCEAAAAAANTGAKTLLITMQLQNMAQMSCNPAVGGIAKGQIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++    NLD  Q  V 
Sbjct: 62  GGYMGIITDQTAIQFKMLNKSKGPAMWSPRAQSDRMRFSEAWRLQLERLPNLDFFQEMVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +     S IR  +VVLT GTFL G+IHIG  ++  GR G+  +  +   
Sbjct: 122 EVLIEGGKATGVKTSLGSEIRAKSVVLTNGTFLNGIIHIGLKQLGGGRAGEKAAKGITEC 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQIECGIT 243
            +   F+ GR+KTGTP R+DG+++ + K   Q  DE    FS++  T  +T+ Q++C +T
Sbjct: 182 LVAHGFEAGRMKTGTPPRVDGRSLDYSKMTPQPGDENPEKFSYLPLTQPLTH-QLDCYMT 240

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ E H I+      S +++G I   GPRYCPSIEDKI RF +++ HQIF+EPEG +T 
Sbjct: 241 YTSEEVHDILRTGFDRSPMFTGIIHGVGPRYCPSIEDKINRFADKDRHQIFVEPEGWHTV 300

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPEE+Q+  +R + G E+V  +RPGYAIEYDY  P +L  TLETK I  L
Sbjct: 301 EMYVNGFSTSLPEEVQYTALRKVAGFEQVKFLRPGYAIEYDYFPPTQLKATLETKIIENL 360

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AGIN++RK  +       R ++YIGV+IDDL +KG  EP
Sbjct: 361 FFAGQINGTTGYEEAGAQGLIAGINASRKVQEQSPFVLKRNEAYIGVLIDDLITKGTEEP 420

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR  LR DNAD RLTP+G  LG   E R +   +   +        K   +
Sbjct: 421 YRMFTSRAEYRTLLRQDNADMRLTPMGYALGLASEERMRLLEEKQTKTAAFVQFFKETSI 480

Query: 484 TSKNLSS-----TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVI 533
           T +  +       S   KQ  K     + L+ P+ ++++   +        A++ S  V+
Sbjct: 481 TPEEANPLLEKYDSSPMKQGDKMA---KVLARPNITVEDFMELPQVKAFAHAQQLSKEVL 537

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +IE  YA Y  ++   A ++   E   IP+ F+Y  L +LS E +EKL  ++P  L 
Sbjct: 538 ESTEIEIKYAGYIEKEKNNADKLNRLEDIRIPESFNYDKLTSLSFESREKLKKIRPTTLS 597

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LL+Y+ +
Sbjct: 598 QASRISGVSPADISILLVYMGR 619


>gi|227873161|ref|ZP_03991452.1| glucose-inhibited division protein A [Oribacterium sinus F0268]
 gi|227840992|gb|EEJ51331.1| glucose-inhibited division protein A [Oribacterium sinus F0268]
          Length = 633

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/616 (42%), Positives = 377/616 (61%), Gaps = 11/616 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+G GHAG EAA V+AK G  T L T    +I  M+CNP IGG  KGHLVRE+DAL 
Sbjct: 9   DIVVVGAGHAGVEAALVSAKRGHKTLLFTLSPDSISMMACNPNIGGSSKGHLVRELDALG 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG+V D + +Q R+LN  KGPAV   R QAD+++Y   M+  + +QENL + QGE+  
Sbjct: 69  GMMGKVCDQSFLQSRMLNQSKGPAVHSLRAQADKQVYSRNMRHLVENQENLHIRQGEIVS 128

Query: 127 F--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N EK  I  +V    +      V++ TG +L      G++    G  G   +  L  
Sbjct: 129 LLCNEEKTEIRGVVSSTGARYYAKAVLICTGVYLNARCIYGEVSEETGPNGLRRATKLSQ 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           + +   F   R KTGTPAR+D +++ + K E Q  D  ++PFSF TD  + +  Q +C +
Sbjct: 189 ALLDLGFRLQRFKTGTPARVDRRSLDFSKMEVQKGDVPVVPFSFSTDPASVQIPQEDCYL 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H +I ENI  S +Y+G I+  GPRYCPSIEDK+++F E+N HQIF+EPEG  T
Sbjct: 249 TYTCEEGHEMIRENIDRSPMYNGVIQGTGPRYCPSIEDKVMKFPEKNRHQIFVEPEGRYT 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y +G+S++LPE++Q + +RT+ G EK  ++R GYAIEYD +N  EL  TLETKKISG
Sbjct: 309 NEMYLSGLSSSLPEDVQMRILRTMAGFEKSEMVRCGYAIEYDCLNSLELENTLETKKISG 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NG++GYEEAA QG +AGIN+ +K    +     R+++YIGV+IDDL +K   E
Sbjct: 369 LYFAGQMNGSSGYEEAAVQGFMAGINAVQKIEGKEPFVLDRSEAYIGVLIDDLVTKENKE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-----RQKRFAKYIQEYNFLRSL 477
           PYRM TSRAEYR+ LR DNAD RL   G  LG + E      R+K+ A   +      + 
Sbjct: 429 PYRMMTSRAEYRLLLRQDNADLRLREKGYALGMVSEEEIKATREKQEAIQKELRRMETTY 488

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +    ++ L S S S  Q G   +  E    P+ + QN+  + P+    S  + E ++
Sbjct: 489 IGANAENNRILESISSSPIQSGI--SLRELCKRPECNYQNIAPLDPERPFLSPFIQEEVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y  Y  RQ+ + +  K  E++ +PKD  Y  +  L  E ++KL +++P N+  AS+
Sbjct: 547 IEIKYEGYIKRQIQQVEAFKKMERKKLPKDICYHDIHNLRLEARQKLDLIRPENMGMASR 606

Query: 598 IEGMTPAALNLLLIYI 613
           I G++PA L++LLIY+
Sbjct: 607 ISGVSPADLSVLLIYL 622


>gi|119569151|gb|EAW48766.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_g [Homo sapiens]
          Length = 618

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/592 (44%), Positives = 377/592 (63%), Gaps = 25/592 (4%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V           +T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +  +   Q+ C +T TN     I+++N+  ++      +  GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 298 KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 357

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 358 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 417

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEF 507
             GC+ ++R +R            S+LKS+   S    K +   SIS  +    R A + 
Sbjct: 418 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDV 476

Query: 508 LSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +
Sbjct: 477 LKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQL 536

Query: 565 PKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 537 PKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 588


>gi|163848990|ref|YP_001637034.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526950|ref|YP_002571421.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroflexus sp. Y-400-fl]
 gi|205831520|sp|A9WKL7|MNMG_CHLAA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163670279|gb|ABY36645.1| glucose inhibited division protein A [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450829|gb|ACM55095.1| glucose inhibited division protein A [Chloroflexus sp. Y-400-fl]
          Length = 651

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 271/639 (42%), Positives = 363/639 (56%), Gaps = 29/639 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  T L+T     +  MSCNP+IGG  KGHLVREIDAL
Sbjct: 5   YDVIVVGAGHAGCEAAHAAARLGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGR+ D + IQ R+LN  KGPAV+  R Q D+ LY   M+  +    NLD+ Q  V 
Sbjct: 65  GGLMGRITDRSAIQIRLLNESKGPAVQSLRAQCDKRLYARLMKETLERVPNLDLRQAMVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +  ++  R     V+LTTGTFLRG    G+    AGR G++P+ +L 
Sbjct: 125 RIAPPNADTQCFTVTTHTGWRYLAPAVILTTGTFLRGRAITGEAMWGAGRAGEAPAMALS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---------- 233
                  F   RLKTGTP RL   TI +  TE Q   +  + F     ++          
Sbjct: 185 EDLAALGFPLVRLKTGTPPRLAAATIDFSLTELQPGSDTPLSFGHYYPELGETIPPPEYH 244

Query: 234 --------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
                            Q+ C    T  E H II EN+  + ++SG I+  GPRYCPSIE
Sbjct: 245 GPPAPVYPHPQLDGWRPQLPCYQVHTTPEFHAIIRENLHRAPLFSGIIEGVGPRYCPSIE 304

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           DKIVRF ++  H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L  V ++R GY
Sbjct: 305 DKIVRFADKERHGLFLEPEGWTTSEVYVQGCNTSLPEDVQWAMLRSIPALRNVELMRIGY 364

Query: 340 AIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
           AIEYD +   E+   ++T+++ GLF AGQINGTTGYEEAAAQGL+AGIN+A        +
Sbjct: 365 AIEYDAVATGEITADMQTRRLRGLFFAGQINGTTGYEEAAAQGLMAGINAAHYVQGKPPV 424

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GE 458
              R ++YIGV+IDDLT+K + EPYRMFTSRAEYR+ LR DNAD RLTP+  +LG + GE
Sbjct: 425 ILGRAEAYIGVLIDDLTTKEIREPYRMFTSRAEYRLLLRGDNADLRLTPLAYRLGLVDGE 484

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQ 516
           R     A+  Q  + L+ + +  +  S   N S  +   K   +  T  E L+ P+    
Sbjct: 485 RAAVVEARRQQTEHALQQMRERRIFPSAAVNASLEAHGIKPISQPVTVAEVLARPEVRYT 544

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            L    PD    S  VIE+++I   Y+ Y  RQ  E   ++  E R IP DFDY+SLP L
Sbjct: 545 QLRDALPDLPALSDAVIEQVEIGCKYSGYIARQEREVARMQKMEHRRIPPDFDYTSLPGL 604

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            NE ++ L   +P  L QA ++ G+ PA + ++L  +++
Sbjct: 605 RNEARQVLMRFRPATLGQAGRLAGINPADVAIILFALER 643


>gi|254424794|ref|ZP_05038512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7335]
 gi|196192283|gb|EDX87247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7335]
          Length = 629

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/617 (41%), Positives = 370/617 (59%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 9   FDVVVVGAGHAGCEAALAAARLGCRTLLLTMNLDRIAWQPCNPAVGGPAKSQLAHEVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +G   
Sbjct: 69  GGEIGKIADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKSVVENQENLILREGMAT 128

Query: 126 GFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++  I  I         C   +LTTGTFL G I +GK  + AGR G+  +  +  
Sbjct: 129 DLVLGDRGEIIGIETHFGMTFGCQAAILTTGTFLNGTIWVGKKSLSAGRAGEPAAIGMSE 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +  +  F+T RLKTGTPAR+D +++ + + E+Q  D  +  FSF  +    R QI C +T
Sbjct: 189 TLSRLGFETSRLKTGTPARVDKRSVDYSRLEEQPGDPNVRWFSFDPEVWQEREQIPCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH+++ +N+  S +Y G +++ GPRYCP IEDKIVRF ++  HQIF+EPEG +  
Sbjct: 249 RTTAATHQLVRDNLHLSPVYGGWVEAKGPRYCPCIEDKIVRFADKESHQIFIEPEGRDYP 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST LPE +Q   + T+PGLE   ++RP YA++YDYI   + FPTL TKK+ GL
Sbjct: 309 ELYIQGFSTGLPEHLQVDMLHTLPGLENCTMLRPAYAVDYDYIPATQCFPTLMTKKVEGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGLVAGIN+AR     + I F R  SY+G +IDDL +K + EP
Sbjct: 369 FCAGQINGTTGYEEAAGQGLVAGINAARLVQAKELIVFPREGSYLGTLIDDLCTKDLREP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRS--L 477
           YR+ TSR+EYR+ LR DNAD RLTP+G ++G I +RR    Q++ A  I E   L +  +
Sbjct: 429 YRVLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLYQQKQANIIAEKERLHTERV 488

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +   +  +  + T    K    + T  + +  P F  ++L S     +  ++   E  +
Sbjct: 489 KEQTEVGQQIYADTQQKIK---GSVTLADLIRRPKFHYEHLESYGLGNQALTTAEKEGAE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ  +   +  +  R +P+D DY ++  LS E +EKL+ +KP  + QA++
Sbjct: 546 IDIKYSGYIQRQQKQIDLVSRQTNRSLPQDLDYMTVETLSMESREKLNKVKPLTVGQATR 605

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +N LL++++
Sbjct: 606 IGGVNPADVNALLVFLE 622


>gi|169351491|ref|ZP_02868429.1| hypothetical protein CLOSPI_02271 [Clostridium spiroforme DSM 1552]
 gi|169291713|gb|EDS73846.1| hypothetical protein CLOSPI_02271 [Clostridium spiroforme DSM 1552]
          Length = 620

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/624 (41%), Positives = 376/624 (60%), Gaps = 13/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++   T LIT     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDVIVVGGGHAGIEAALAPARMKQKTVLITANFDNVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD   +Q ++LN  KGP V+  R QAD++ Y   MQ  +  Q+NLD+I+G V 
Sbjct: 62  GGQMAKTADETYLQMKMLNTAKGPGVQSLRAQADKKAYPRYMQAVLKKQDNLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +++ +   I   TV+LTTGT+L+  I  G  K  +G         L   
Sbjct: 122 DLMVEDNCVKGVILANGQEIIGKTVILTTGTYLKAEILCGDQKHASGPDDQEECKYLSTR 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             +      RLKTGTP R++  ++ + KT  Q   +  + FS+ T+K    + Q+ C +T
Sbjct: 182 LKELGLRIQRLKTGTPPRVEINSVDYSKTSLQPGSDAKLAFSYQTNKFIPIDEQVPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II EN+  S++Y G +   GPRYCPSIEDKIV+F ++  HQIFLEPE    +
Sbjct: 242 YTNEKTHKIIKENLHRSSMYGGYVSGVGPRYCPSIEDKIVKFSDKPQHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST+LP ++Q + IRTIPGLE   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSLPHDVQEEMIRTIPGLEHCKILKYAYAIEYDAIDPLQLWPSLETKIIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA+QGL+AGIN+  K+   + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAASQGLIAGINATLKNQNKEPLILKRDEAYIGVMIDDLVTKGTEEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ +R DNAD RL   G  +G I +   +++   +       + L ++  
Sbjct: 422 YRMLTSRAEYRLLIRHDNADERLMKYGHDVGLISDDIYQQYLNKMSNIFNEIARLDTIRF 481

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T K+    +   +Q G TR     +A E +  P+   + +     DA   +    +R+ I
Sbjct: 482 TPKH--PINDVLEQLGSTRLNEGISAKELIKRPELDYEKILPFI-DAPDLNEEERKRITI 538

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  + M +A++ K  E++ IP+D DY+ +  L+ E K+KLS ++P  + QAS+I
Sbjct: 539 LIKYKGYIDKAMRQAEKQKKMEEKKIPEDVDYNEISNLALEAKQKLSSIRPLTIGQASRI 598

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ PA +++LLIY+K+   K NE
Sbjct: 599 SGINPADISVLLIYLKQ---KYNE 619


>gi|332297240|ref|YP_004439162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema brennaborense DSM 12168]
 gi|332180343|gb|AEE16031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema brennaborense DSM 12168]
          Length = 627

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/646 (41%), Positives = 369/646 (57%), Gaps = 89/646 (13%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAA  A+++G  T L+T    +IG MSCNP+IGG+ KG++VREIDAL G MGR+ D + I
Sbjct: 21  EAALAASRMGLKTLLVTQTIDSIGRMSCNPSIGGIAKGNIVREIDALGGEMGRLIDKSMI 80

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI----- 133
           QFR+LN  +GPAV+ PR QAD+ LY    +  + S  NL V+Q  V      +++     
Sbjct: 81  QFRLLNRSRGPAVQAPRAQADKLLYAQLARHTLESAPNLSVLQDTVVDIEAAESVASLPP 140

Query: 134 -------------------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
                                    IS++V +    I     VLTTGTFL G I IG   
Sbjct: 141 DSSGISEPGSLPGETRGGGASMRQKISALVTERGRRIPVRAAVLTTGTFLGGRIFIGAYD 200

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P GR+G+  +  L  +  K  F TGRLKTGTP R+   +I +   E Q  D  +IPFSF
Sbjct: 201 APCGRLGEQGAFGLTQALNKLGFTTGRLKTGTPPRVLKSSIDFSVLELQQGDLDVIPFSF 260

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            T +I    + C +  TN ETHRII ENI  S +YSG I   GPRYCPSIEDK++RF ER
Sbjct: 261 DTKQIDRPMVPCHLVYTNTETHRIIRENISKSPLYSGKISGIGPRYCPSIEDKVMRFAER 320

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ+F+EPEGL TD +Y NG S++LPE++Q  F+RT+PG     + RPGYA+EYD+I+P
Sbjct: 321 ERHQLFVEPEGLTTDEMYINGFSSSLPEDVQDSFLRTLPGFADAVVSRPGYAVEYDFIDP 380

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA--RKSNKLDC-------- 398
            +LFP+LETK ++GLF AGQINGT+GYEEAA QGLVAGIN+A   K++ L C        
Sbjct: 381 TQLFPSLETKPVAGLFTAGQINGTSGYEEAAGQGLVAGINAALYAKAHALLCGPFPCHPD 440

Query: 399 ----------ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
                     +  SR+++YIGV+IDDL + G  EPYRMFT+RAEYR+ LR D AD RL  
Sbjct: 441 RRADIPSYEPLVLSRSEAYIGVLIDDLVTLGTKEPYRMFTARAEYRLKLRHDTADRRLCG 500

Query: 449 IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
            G   G      Q R+   +++   +R   + L L ++N ++                  
Sbjct: 501 KGFAAGL---NSQSRYEAVLEK---IRMEDEILALLARNPAA------------------ 536

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
                          D   + + + E  Q++  Y  Y  +Q    +++K  +   IP +F
Sbjct: 537 ---------------DNPGYPAALWEEAQVDFKYKHYIEKQDKRVEKLKRMDTARIPDNF 581

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           DY+++P+LS E ++KL  ++P  L QAS+I G+  + + LL++Y+K
Sbjct: 582 DYAAIPSLSAESRQKLEKIRPLTLGQASRISGIRNSDIMLLMVYLK 627


>gi|290968161|ref|ZP_06559706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781836|gb|EFD94419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 629

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/624 (42%), Positives = 379/624 (60%), Gaps = 24/624 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AA+LG  T + T     I  M CNPA+GG GK HLVREIDA
Sbjct: 6   TYDVIVIGAGHAGCEAALAAARLGVRTLICTLNLDNIALMPCNPAVGGPGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R Q+D+++Y++ M   + +Q+NLDV Q  +
Sbjct: 66  LGGEMAINTDKTCIQMRMLNTGKGPAVYSLRAQSDKKVYQMTMTETLENQKNLDVKQLLI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +   + R   V+L TGT+L+G I IG      G MG   + +L  
Sbjct: 126 TELLFEGNKVTGVVTELGEVYRAKAVILATGTYLKGKILIGDCSYAGGPMGQRSAEALSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTPAR+D +T+  ++ EKQ  D +   FSF+  +       C +T 
Sbjct: 186 SLRQAGIRLMRFKTGTPARVDRRTLRTEEMEKQEGDTKGHAFSFLLPRQNRNTDCCWLTF 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETHRII +N+  +   +G ++  GPRYCPSIE KI RF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNEETHRIIRDNLHRAPTCNGTVQGIGPRYCPSIESKIQRFADKKRHQLFIEPEGKMTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F++TIPGLE V I+RP YAIEYD ++P +L   L  K+  GL+
Sbjct: 306 MYIQGMSTSLPVDVQYAFLKTIPGLEDVKIMRPAYAIEYDCLDPLQLDAALAVKEKEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+AR   + D    +R ++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLIAGINAARFVLQQDPFILTRAEAYIGVLIDDLVTKGTQEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +     +R+A + Q+   ++  LK+L   
Sbjct: 426 RMMTSRSEYRLLLRQDNADLRLTQKGYDMGLVTP---ERYAVFQQKQQAIQEALKAL--- 479

Query: 485 SKNLSSTSISFKQDGKTR----------TAYEFLSYPDF---SIQNLFSICPDARKFSSL 531
            K  + T  +  Q+   R          TAY+ L   +    ++Q +F + P     S+ 
Sbjct: 480 -KECAVTPTAITQEKLRRIGTAPVRTGTTAYDLLRRNEVTYDTLQQVF-LLPS---VSAE 534

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E ++I   Y  Y  RQ  + +++   E++L+P    Y SL  +S E +EKL+ ++P +
Sbjct: 535 VQEEMEIMVKYEGYIERQAEQVEKMNRLEQKLLPSSIQYDSLTTVSAEGREKLARIRPRS 594

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QA +I G++PA +  LLIY+++
Sbjct: 595 IGQAGRISGVSPADITALLIYLEQ 618


>gi|83319255|ref|YP_424798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|123535456|sp|Q2SR15|MNMG_MYCCT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83283141|gb|ABC01073.1| glucose inhibited division protein A [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 629

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/619 (41%), Positives = 374/619 (60%), Gaps = 10/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VREIDA
Sbjct: 4   NYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I  Q+NLD+I    
Sbjct: 64  LGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKKQKNLDLITKAC 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   + N  ++ I + D  ++    V++TTGT+L+  I  G  +  +G   +  +  + 
Sbjct: 124 TGLVYDDNKSVTGIYLDDEIILNAKAVIITTGTYLKSEILKGIDRYESGPNNEKTTKGIS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
            S +       R KTGTPAR+   ++   +   +   +  + FSF T+  T   +Q  C 
Sbjct: 184 KSLIDLGIKLMRFKTGTPARVYRDSVDLSRAIIEPGTDMKLAFSFSTNTYTPIEKQQPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE LN
Sbjct: 244 LIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPETLN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K + 
Sbjct: 304 GDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELKDVR 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +KGV 
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINKGVW 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +   +++  Y++E       LK +
Sbjct: 424 EPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDTEWEQYLIYVKEIEQAIKELKEI 483

Query: 482 VLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             T K+  + ++  K+        + YE +  P   I  L    P  +K  +  ++ + I
Sbjct: 484 RFTPKSQLAINLKNKKQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQSIVI 543

Query: 539 ESSYAAYTG--RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           E  +  Y    RQ+++ K +K E K+ IP D +YS +  L+ E K+KL  ++P N+ QAS
Sbjct: 544 EIRFEGYVKKERQLVD-KLVKLERKK-IPLDINYSKVDNLATEAKDKLEKIRPLNIGQAS 601

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+ PA + +LL Y+KK
Sbjct: 602 RITGVNPADIQMLLFYLKK 620


>gi|50552478|ref|XP_503649.1| YALI0E06941p [Yarrowia lipolytica]
 gi|49649518|emb|CAG79231.1| YALI0E06941p [Yarrowia lipolytica]
          Length = 688

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/646 (42%), Positives = 382/646 (59%), Gaps = 39/646 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAGCEA+A AA+ GA T L+T K   IG+ SCNP+IGG+GKG LV E+DA+
Sbjct: 38  YDVVVVGGGHAGCEASAAAARSGARTLLVTPKFDNIGTCSCNPSIGGIGKGTLVTEVDAM 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGI F++LN  +G AV G R Q DR++Y+  MQ+ I    NL+V++G V 
Sbjct: 98  DGLMGRVADKAGIHFKMLNRSRGFAVWGLRAQIDRKIYKKEMQQLIRDYPNLEVLEGTVE 157

Query: 126 GFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
              T              I+ + ++    I    VV+TTGTFL G IHIG    P+GRMG
Sbjct: 158 DLLTTPEATPDAVKSYGSIAGLTLESGETINTEKVVITTGTFLGGEIHIGLEAYPSGRMG 217

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-- 233
           +  +  + N+  +  F  GRLKTGTP R+D  TI +     +  DE   PFS++ D +  
Sbjct: 218 EKATFGISNTLREVGFMLGRLKTGTPPRIDSTTIDYSTMLPELQDEDPFPFSYLNDDVPA 277

Query: 234 ------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                              N  + C   +T   TH +I +N+  S     D+K  GPRYC
Sbjct: 278 AKTDGSVNEETPAELRGPNNHSVVCYKAKTVKATHDLIRDNLDKSIHIREDVK--GPRYC 335

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIE KI+RF +++ H I++EPEGL+T  +YPNGIST LP E Q Q ++TIPG E V + 
Sbjct: 336 PSIESKIIRFADKDSHVIWVEPEGLDTTTIYPNGISTTLPAETQLQVLKTIPGFENVTMT 395

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           +PGY +EYDY++P+EL  TLETK + GL+LAGQINGTTGYEEAAAQG++AG N+  ++  
Sbjct: 396 QPGYGVEYDYVDPRELKNTLETKLVHGLYLAGQINGTTGYEEAAAQGIIAGFNAGLQAQN 455

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            +     R+D YIGV+IDDL +KGV EPYRMFTSR+E+R S+R DNAD RLT    + G 
Sbjct: 456 KEPFTMRRSDGYIGVLIDDLITKGVSEPYRMFTSRSEFRFSVRADNADERLTVKAFERGL 515

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK-----QDGKTRTAYEFLSY 510
           +  RR  R  +  +    ++ + +S  LT    +   + +K      +GK  TA   L  
Sbjct: 516 VDSRRVSRLEQRNEAIADIKKIFESKRLTPTEWNE-QLGYKVFPRLVEGKM-TAAHMLLV 573

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
                  LF+  P+  K+   +I R+  E  Y  Y  ++  +   ++ +E   +P++ DY
Sbjct: 574 KGIDDDLLFATMPELSKYPPRLILRVTTEYRYKMYLDKERQQIASVERDESLKLPENLDY 633

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            S+  L  E +  L  ++P  L QA +IEG++ +    LL Y+ KN
Sbjct: 634 MSMAGLKIEYRTVLDKVRPATLGQAKRIEGISNSVCFYLLKYVHKN 679


>gi|315039280|ref|YP_004032848.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1112]
 gi|325957754|ref|YP_004293166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus 30SC]
 gi|312277413|gb|ADQ60053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1112]
 gi|325334319|gb|ADZ08227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus 30SC]
 gi|327184387|gb|AEA32834.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1118]
          Length = 632

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/617 (42%), Positives = 360/617 (58%), Gaps = 11/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 EVVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FSF T        QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSFETKDADYLQHQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + +++G IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNPTTHEIIRNNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGETTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 310 EVYVGDFSTSMPEEVQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I + R KRF +  Q     +  L  + +
Sbjct: 430 YRLLTSRAEYRLILRTDNADLRLTEYGHELGLISDERYKRFEEKKQAIKKAKERLHEITV 489

Query: 484 TSKNLSSTSISF-KQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              +L+     F K  G+        A  FL  P+  I ++  +  +       V E+++
Sbjct: 490 ---HLTDEVQDFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY ++  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEAIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA L +L +YI+
Sbjct: 607 ISGVNPADLAILSVYIQ 623


>gi|255037550|ref|YP_003088171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dyadobacter fermentans DSM 18053]
 gi|254950306|gb|ACT95006.1| glucose inhibited division protein A [Dyadobacter fermentans DSM
           18053]
          Length = 620

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/618 (43%), Positives = 374/618 (60%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAAA AA +G+S  LIT    TI  MSCNPA+GG+ KG +VREID
Sbjct: 3   QEYDVIVVGAGHAGCEAAAAAATMGSSVLLITMNMHTIAQMSCNPAMGGVAKGQIVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G  G V+D   IQFR+LN+ KGPA+  PR Q+DR  +    +  + +  N+D  Q  
Sbjct: 63  ALGGQSGIVSDKTMIQFRMLNLSKGPAMWSPRCQSDRVRFAEEWRSILENNPNVDFWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   +  +V      IR   VVLT GTFL G+IHIG+     GR G+  +  L 
Sbjct: 123 AKNIIVEDGKVCGVVTSLGIQIRSKAVVLTNGTFLNGLIHIGEKNFGGGRTGEKSATGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
              +   F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+   K   +Q  C IT
Sbjct: 183 EQLVTLGFEAGRMKTGTPPRVDGRSLDYSKMEEQPGDEVPAKFSYTDTKPLAKQRSCWIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H ++    + S ++SG IK  GPRYCPS+EDKI RF +++ HQIF+EPEG +T 
Sbjct: 243 YTNQEVHDVLKTGFEKSPMFSGRIKGLGPRYCPSVEDKINRFADKDRHQIFVEPEGWDTV 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG ST+LPE++Q+  +R IPG E   + RPGYAIEYDY  P +L  TLET  +  L
Sbjct: 303 EVYVNGFSTSLPEDVQYAALRKIPGFENAKMFRPGYAIEYDYFPPTQLKSTLETHLVKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGL+AGIN+ R  N LD     R+++YIGV+IDDL +KG  EP
Sbjct: 363 FFAGQINGTTGYEEAACQGLMAGINAHRNVNDLDPFVLKRSEAYIGVLIDDLINKGTEEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR  LR DNAD RLT  G ++G   + R +   K  +E   + + L +  L
Sbjct: 423 YRMFTSRAEYRTLLRQDNADLRLTEKGYEIGLASDERVEAVRKKKRETEEVIAKLNATKL 482

Query: 484 TSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFS----ICPDARKFSSLVIERLQ 537
           T   ++    +I   Q  +     + L  P  SI  L      +     ++++  +++ +
Sbjct: 483 TPDEINPALEAIGTAQIREKIAVAQLLRRPQISIDQLLEASAVVTELLAEYANDSVQQAE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y +Y  ++M+   ++   E   I ++F+Y  + +LS E +EKL   +P  + QAS+
Sbjct: 543 INLKYDSYIEKEMLLVDKMNKLENLAIVENFNYDGVTSLSFEGREKLKRTRPSTIGQASR 602

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++P+ +++L++YI +
Sbjct: 603 ISGVSPSDISVLMLYIGR 620


>gi|256851669|ref|ZP_05557057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661614|ref|ZP_05862526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934248|ref|ZP_06339525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|297205278|ref|ZP_06922674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii JV-V16]
 gi|256615627|gb|EEU20816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547671|gb|EEX23649.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301722|gb|EFA93989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|297149856|gb|EFH30153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii JV-V16]
          Length = 634

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/617 (42%), Positives = 361/617 (58%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +AK+G  T LIT     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAKMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQATVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +     +VVLTTGT  RG I IG+L   +G      +  L  +
Sbjct: 130 ELIVEDGVCHGVVTNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDSEPRHFSFETKDEDYLKDQLSCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG +TD
Sbjct: 250 YTNETTHKIIRDNLDRAPMYTGVIEGIGPRYCPSIETKIVRFADKPRHQIFLEPEGKHTD 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 310 EYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNIKNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKPGFTLGRDEAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G KLG I + R ++F +         + L  + +
Sbjct: 430 YRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQKFEEKKAAIKQTLAELYDITI 489

Query: 484 TSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
              +     L S   S    G   +A  FL  P  +I  +  +          V E+++I
Sbjct: 490 HPNDEVQEYLESIGQSPLNAGLKASA--FLRRPGVTIAAIEKLSGTKLNSDRYVREQVEI 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +I
Sbjct: 548 DVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAERI 607

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA + +L +YI++
Sbjct: 608 SGVNPADIAILTVYIQQ 624


>gi|238926590|ref|ZP_04658350.1| glucose-inhibited division protein A [Selenomonas flueggei ATCC
           43531]
 gi|238885536|gb|EEQ49174.1| glucose-inhibited division protein A [Selenomonas flueggei ATCC
           43531]
          Length = 626

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/620 (42%), Positives = 375/620 (60%), Gaps = 13/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP++GG GK HLVREIDA
Sbjct: 6   NYDIIVIGAGHAGVEAALAAARMGQRTLIVTLSLDNIAMMPCNPSVGGPGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENLDV Q  V
Sbjct: 66  LGGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLDVRQLLV 125

Query: 125 AGFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               TE+      ++ +V +    +    V+L TGT+LRG I +G+     G  G  P+ 
Sbjct: 126 TELITEERTGEKRVTGVVCETGERLTAHAVILATGTYLRGRIILGETIYDGGPNGQRPAM 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +   S         R KTGTPAR+D +T+   +T  Q  D     FSF+TD + + Q  C
Sbjct: 186 AFSESLRAAGLRLMRFKTGTPARVDRRTLDLAETALQAGDPDAPAFSFLTDAMPDAQTPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  + + +G I+  GPRYCPSIE KI RF ++  HQ+FLEPEGL
Sbjct: 246 YLTYTNEATHAVIRANLHRAPMANGVIEGIGPRYCPSIETKIARFPDKERHQLFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y  G+ST+LP ++Q +F+RTIPG+    ++RPGYAIEYD ++P +L  +L  K+I
Sbjct: 306 HTNEIYVQGMSTSLPTDVQEEFLRTIPGMHHARMMRPGYAIEYDCLDPLQLEASLAVKEI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR     + +   R+D YIGV+IDDL +KG 
Sbjct: 366 AGLYSAGQANGTSGYEEAAAQGLVAGINAARACMGEEPLILRRSDGYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLTPIG ++G + + R  RF       +    LL+ 
Sbjct: 426 EEPYRMMTSRAEYRLVLRQDNADLRLTPIGRRIGLVSDARWARFTAKRGAIDAALRLLRE 485

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSY----PDFSI-QNLFSICPDARKFSSLVIER 535
             L+    +   ++       RT     +      D+ +   +F + P     +  V E 
Sbjct: 486 RRLSPSAETEALLAGAGISPLRTPMTLFALLAREGDYRVLAAVFDLPP----LADDVREE 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + Y  Y  +Q  +   ++  E R IP D DY+++ +L  E  EKLS ++P  + QA
Sbjct: 542 VEIMARYDGYIRKQEEQIARMERLEARRIPADTDYAAIGSLRLEAAEKLSAVRPRCIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LL+Y+++
Sbjct: 602 SRISGVSPADISVLLVYLER 621


>gi|261749197|ref|YP_003256882.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497289|gb|ACX83739.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 624

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/616 (44%), Positives = 378/616 (61%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA+ +AK+G+ T LIT    TIG MSCNPAIGG+ KG ++REIDAL
Sbjct: 8   YDVIVVGGGHAGAEAASASAKMGSKTLLITTNLQTIGQMSCNPAIGGIAKGQIIREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G + D + IQFR+LN  KGPA+  PR Q DR+L+    +  +   + LD+ Q  V 
Sbjct: 68  GGNSGIITDYSMIQFRMLNKSKGPAMWSPRAQCDRKLFSNNWRYFLEKNQKLDLYQDTVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +K  +  ++    + I+  +V+LT GTFL G IHIGK  +  GR+ +     +   
Sbjct: 128 SLIVKKEKVKGVITSFGTKIKGKSVILTNGTFLNGKIHIGKKIVSGGRIAEQEVKGITEQ 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F  GR+KTGT  R+DG+++ + K   Q  D     FSF       +Q +C IT T
Sbjct: 188 LKSLGFRYGRMKTGTSPRVDGRSLNYHKMGSQEGDLNPKKFSFSNTIKLRKQRKCHITCT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H +I +N+K S I++G I+   PRYCPSIE+KI RF ++  H IF+EPEG NT  V
Sbjct: 248 NKKVHDLIRKNLKFSPIFTGSIQGVSPRYCPSIEEKIYRFTDKEEHHIFVEPEGWNTVEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LPE+IQ Q +R I G EK  ++RPGYAIEYDY  P +L  TLE++ IS LF 
Sbjct: 308 YINGFSTSLPEKIQSQALRNISGFEKAKMLRPGYAIEYDYFPPIQLKLTLESRLISNLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN+  K ++ +     R+ +YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTTGYEEAAAQGLIAGINAHLKIHQKEPFILKRSQAYIGVLIDDLITKGTEEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLT +G K+G I + + K   K   +     S  +   L  
Sbjct: 428 MFTSRAEYRMLLRQDNADERLTYMGYKIGLISDGKMKAVDKKKSKVEKCLSFFQKENLKP 487

Query: 486 KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP------DARKFSSLVIERLQ 537
           K ++   I  K       +     LS  +  I ++ SI P      +   FS  ++E++ 
Sbjct: 488 KIINPILIEKKSPIISHEKKIDIILSRSEIDIHDIISI-PFLKNKIEKNNFSQEILEQVS 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  R+   AK++   E   IP++FDY  +P+LS E +EKL+  +P +L QAS+
Sbjct: 547 IRIKYRGYLDREKENAKKLLKLENLKIPENFDYEKIPSLSLEAREKLAYHRPNSLAQASR 606

Query: 598 IEGMTPAALNLLLIYI 613
           I G++P+ L++LL+Y+
Sbjct: 607 ISGVSPSDLSILLVYM 622


>gi|58338214|ref|YP_194799.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus NCFM]
 gi|227902599|ref|ZP_04020404.1| glucose-inhibited division protein A [Lactobacillus acidophilus
           ATCC 4796]
 gi|81170549|sp|Q5FHQ6|MNMG_LACAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58255531|gb|AAV43768.1| glucose inhibited division protein A [Lactobacillus acidophilus
           NCFM]
 gi|227869688|gb|EEJ77109.1| glucose-inhibited division protein A [Lactobacillus acidophilus
           ATCC 4796]
          Length = 632

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/614 (42%), Positives = 359/614 (58%), Gaps = 5/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 10  YDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q  V 
Sbjct: 70  GGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEYMKDTIENTPNLTLRQAIVD 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L  +
Sbjct: 130 ELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELMYSSGPNNTTPSIKLSEN 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C +T
Sbjct: 190 LEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKVPRHFSYESKDENYLQNQISCWMT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I +N+  + +++G IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG  T 
Sbjct: 250 YTNPVTHEVIRDNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGKTTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD + P +L  TLETK +  L
Sbjct: 310 EVYVGDFSTSMPEEVQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNVKHL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG  EP
Sbjct: 370 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQGKSGFTLGRNDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F +  Q     ++ L  + V
Sbjct: 430 YRLLTSRAEYRLILRHDNADLRLTEYGHKLGLISDDRYQAFEEKKQAIKDTQARLHEITV 489

Query: 483 LTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S  Q+       A  FL  P  +I ++  +          V E+++I  
Sbjct: 490 HVTDEVQDFLKSIGQEPMKAGVKADVFLRRPHVTINDIERLTGQKIDGDRYVKEQVEIGI 549

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  ++      +K +E + IP D DY+ +  L+ E ++K   ++P  L QA +I G
Sbjct: 550 KYAGYIKKEETRIARLKRQEAKKIPADIDYNMIEGLATEARQKFEKIRPETLAQAERISG 609

Query: 601 MTPAALNLLLIYIK 614
           + PA L +L +YI+
Sbjct: 610 VNPADLAILSVYIQ 623


>gi|242214297|ref|XP_002472972.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727944|gb|EED81849.1| predicted protein [Postia placenta Mad-698-R]
          Length = 612

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/587 (43%), Positives = 367/587 (62%), Gaps = 27/587 (4%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   IG +SCNP++GG+GKG L+RE+DALDGL GRVAD AGIQF++LN  KG AV 
Sbjct: 35  LLTQKLDNIGELSCNPSMGGVGKGTLMREVDALDGLCGRVADQAGIQFQILNRSKGAAVW 94

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR Q DR LY+  MQ  + +  +LD+    V+    + + I++       +I+CS V++
Sbjct: 95  GPRAQIDRSLYKQHMQAALHNYPSLDIRSASVSDLVFDHDGINAF-SDSGEVIKCSQVII 153

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
            TGTFL G IHIG  + PAGR+ ++PS  L  S     F  GRL+TGTPARL   +I + 
Sbjct: 154 CTGTFLSGEIHIGMKRFPAGRINEAPSVGLSGSLRSAGFQLGRLQTGTPARLYKDSIDFR 213

Query: 213 KTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
             E+Q  D    PFSFM  +++N   QI C +T T  ETH+II +N+ H +++  + K  
Sbjct: 214 NLEQQRGDSTPHPFSFMNSRVSNANNQIMCYLTYTTPETHQIIRDNL-HQSVHIQETKK- 271

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPS+E K++RF ++N H ++LEPEG +++++YPNG+S ++PEE+Q    RT+PGLE
Sbjct: 272 GPRYCPSLEAKVIRFPQKNQHVVWLEPEGYDSELIYPNGLSCSMPEEVQLMMYRTVPGLE 331

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
            V + RP Y +EYDY++P+EL  TLETK+I GLFLAGQINGTTGYEEAAAQG++AGIN+ 
Sbjct: 332 NVKLARPAYGVEYDYVDPRELKSTLETKRIKGLFLAGQINGTTGYEEAAAQGVLAGINAG 391

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
             +     +  SR D +IG   +           RMFTSR+EYR+++R DNAD RLT   
Sbjct: 392 MSALHRAPLVLSRADGFIGEQRNHAN--------RMFTSRSEYRMTIRSDNADLRLTEKA 443

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSISFKQDGKTRTAYEFL 508
              G I + R K+F    +E   +  LLKS VL+ +  N+SS            +AY+ L
Sbjct: 444 RNAGAITDERWKQFEATREELTRVTDLLKSHVLSPQVSNISS------------SAYDML 491

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            +   +I+ LF   P+ +   S ++ R++IE  Y  +  RQ  + +    +E   +    
Sbjct: 492 RHRSVTIEQLFLAIPELKLVDSRILTRVEIEGIYRTHLRRQEADLRVFLEDEGLTLDPHL 551

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           DY  +  LS+E+KE+L  ++P ++  A ++EGMTP ++  LL + K+
Sbjct: 552 DYEIVEGLSSEVKERLYRVRPTSIGVAKRMEGMTPTSIVSLLKFAKR 598


>gi|206603437|gb|EDZ39917.1| Glucose-inhibited division protein A [Leptospirillum sp. Group II
           '5-way CG']
          Length = 605

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/617 (43%), Positives = 371/617 (60%), Gaps = 24/617 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV++IGGGHAG EAAA ++++G+ T L+T     IG MSCNP++GG+GKGH+V EI+A+
Sbjct: 4   WDVVIIGGGHAGIEAAAASSRMGSETLLVTLHLDLIGQMSCNPSVGGIGKGHIVAEIEAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M ++ADA+G+QF++LN +KG AV+  R Q DR  YR   +  + +  NL   QGEV 
Sbjct: 64  GGAMSKLADASGLQFKMLNTRKGYAVQALRVQCDRYRYRQQARLLLENYPNLFFRQGEVV 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G+  + ++++S+++ D + I   + VLTTGTFL G +H+G+  +  GR G+  ++ L + 
Sbjct: 124 GWKLKGSLVTSVLLHDETEIFARSFVLTTGTFLSGKLHVGERLVEGGRGGEKNASHLSSR 183

Query: 186 FM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
                    GRLKTGTP RL GKTI +   + Q  D   + FS   D         Q  C
Sbjct: 184 LQGDLGLSVGRLKTGTPPRLSGKTIDFSCMDIQPGDNPPVFFSHNPDNNRFFFDGPQYPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +T  II EN+  S +YSG IK  GPRYCPSIEDKIV+F ER  H +F+EPEG 
Sbjct: 244 YLTSTNHQTADIIRENLSRSPLYSGKIKGIGPRYCPSIEDKIVKFPERQSHHVFIEPEGA 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D  YPNGIST+LP ++Q Q + +IPGLE   I RPGYA+EYD++ P +L  +L+   +
Sbjct: 304 GVDEFYPNGISTSLPVDVQEQIVHSIPGLENAQITRPGYAVEYDFVFPDQLDLSLKVAHL 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +FLAGQINGTTGYEEAA QGLVAGIN+   +         R  SYIGVMIDDL S+GV
Sbjct: 364 DNVFLAGQINGTTGYEEAAGQGLVAGINAGLLAKGKMPWIPDRALSYIGVMIDDLVSQGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE R+ +R  NAD+R+TPIG  LG + E + + F K    ++ L+ +L+S
Sbjct: 424 DEPYRMFTSRAENRLLIRHHNADDRMTPIGQSLGVVPESQWRIFEKKRDSFSQLKKILQS 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                KN       F Q  K    +  +FL +   S  ++++  P   +F  +  E    
Sbjct: 484 HRTDGKN-------FFQALKQPDVHLDDFLEH---SFSDIYASWP---RFWQIGFES--- 527

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y      + +++K E+   IP+ F  S  P +S E+  +L    P    +A  I
Sbjct: 528 EIKYEGYIRISEKKTQDLKGEDYP-IPEGFWNSPPPGISREIFTRLVKASPRTFREAMHI 586

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTP AL  L   +++
Sbjct: 587 RGMTPGALESLRTKLRQ 603


>gi|110639868|ref|YP_680078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966492|sp|Q11PC8|MNMG_CYTH3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110282549|gb|ABG60735.1| glucose-inhibited division protein A [Cytophaga hutchinsonii ATCC
           33406]
          Length = 621

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 270/619 (43%), Positives = 382/619 (61%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAAA AA +G+   L T    TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVVGAGHAGCEAAAAAANMGSKVLLATMNMQTIAQMSCNPAMGGVAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL G V+D + IQFR+LN  KGPA+  PR+Q DR ++    + ++ +  N+D  Q  ++
Sbjct: 65  GGLSGIVSDKSMIQFRMLNRSKGPAMWSPRSQNDRHMFAWEWRMQLEALPNVDFWQEMIS 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   +   +  +       I C +VVLT GTFL G+IHIG+ K+  GR G+  +  +   
Sbjct: 125 GLIVKNGKVCGVRTGLGIEIPCKSVVLTNGTFLNGIIHIGEKKLGGGRTGEKAATGITEQ 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITR 244
            ++  F++GR+KTGTP R+DG+++ +   ++Q  DE    FS+     +  +Q  C IT 
Sbjct: 185 LVELGFESGRMKTGTPPRVDGRSLDYSVMQEQEGDENPSKFSYSKQTTSLTKQRSCHITY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   H  + E    S +++G IK  GPRYCPS+EDKI RF E+  HQIF+EPEG NT  
Sbjct: 245 TNQAVHDTLKEGFDRSPMFTGRIKGLGPRYCPSVEDKINRFAEKERHQIFVEPEGWNTVE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NG ST+LPE++Q++ IR I G E   + RPGYAIEYD+  P +L  +LET+ +  LF
Sbjct: 305 VYVNGFSTSLPEDVQYKAIRKIAGFENAKMFRPGYAIEYDFFPPTQLQLSLETRLVKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QGL+AGIN+ + +   + +   R+++YIGV+IDDL +KG  EPY
Sbjct: 365 FAGQINGTTGYEEAACQGLMAGINAHKAAKDHEALILKRSEAYIGVLIDDLVNKGTEEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR DNAD RLTPIG ++G   E R +     ++++N    L++ +  T
Sbjct: 425 RMFTSRAEYRILLRQDNADLRLTPIGYEIGLATEERYQDM--LLKKHNS-EKLVEEIKNT 481

Query: 485 SKNLSSTSISFKQDG-----KTRTAYEFLSYPDFSIQNLFSICPDARK-----FSSLVIE 534
                + +   +++G     +    Y  L  P+  + +LF+   +  K     ++   IE
Sbjct: 482 KIKPETANEILEENGSAPIKEKVVLYNLLKRPNMEV-SLFAEKVEEIKTLIEPYTQEEIE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +  IE  Y  Y  ++   A ++   E   +  DFDY  + ALS E +EKLS LKP  L Q
Sbjct: 541 QAMIEVKYRDYIDKEEQMALKMTQLENMALNPDFDYKKIQALSLEAREKLSKLKPATLGQ 600

Query: 595 ASKIEGMTPAALNLLLIYI 613
           AS+I G+ PA +++L+IY+
Sbjct: 601 ASRISGVNPADISILMIYM 619


>gi|317419350|emb|CBN81387.1| 'Protein MTO1 homolog, mitochondrial ' [Dicentrarchus labrax]
          Length = 692

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/642 (44%), Positives = 394/642 (61%), Gaps = 39/642 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EAAA AA++GA T L+T K  TIG++SCNP++GG+GKG LV+E+D
Sbjct: 26  QQYDVIVVGGGHAGTEAAAAAARVGAETLLVTQKIHTIGALSCNPSLGGVGKGQLVKEVD 85

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GR  D AGI F +LN +KGPAV GPR Q DRE YR  +Q E+LS   L V++G 
Sbjct: 86  ALDGLCGRAGDWAGIHFSILNRRKGPAVWGPRAQLDRERYRKFIQSELLSTPRLTVVEGS 145

Query: 124 VAG-FNTEKNI-------ISSIVMQDNS-MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V     TE N        ++ I +++ S  I  S+V+LTTGTFL G + +G+   P GR+
Sbjct: 146 VEDLLVTEPNPEEPGHHKVTGIRLENGSDPISASSVILTTGTFLTGSLFMGQTMSPGGRI 205

Query: 175 GDSPSNSLFNSFM--KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--- 229
           GD+PS++  +  M  +     GRL+TGTP R+   ++   +      D    PFSF+   
Sbjct: 206 GDAPSSAGLSRTMRERLGLRIGRLRTGTPPRIVKDSVDLAQAHLHLPDSPPTPFSFLNTH 265

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           T      Q+ C +T T     R++ E++  +     D K  GPRYCPSIE +++RF  R 
Sbjct: 266 TRCKPEEQLPCYLTYTTPGVERVVQESLHLNCHIQQDAK--GPRYCPSIESRVLRFPGRK 323

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG----------- 338
            HQ++LEPEG+ +D++YP G+S  +P +IQ + IR IP + +  I  PG           
Sbjct: 324 -HQVWLEPEGVTSDLLYPQGLSMTMPPDIQLRLIREIPAMHRAEIHTPGTRPESCLIACS 382

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           Y ++YD++ P +L P L+ K   GLFLAGQINGTTGYEEAAAQGL AG+N+AR +  +  
Sbjct: 383 YGVQYDFVCPTQLSPALQVKSTQGLFLAGQINGTTGYEEAAAQGLWAGVNAARWALSMPA 442

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIG 457
           +  SRT+SYIGV+IDDL S+GV EPYRMFTSRAE+R SLRPDNAD RLT  G  ++GC+ 
Sbjct: 443 VTLSRTESYIGVLIDDLVSRGVTEPYRMFTSRAEFRTSLRPDNADLRLTLKGFEEVGCVS 502

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDF 513
             R +   +     +   + L+SLVL+S N    L    I   ++G      + L Y D 
Sbjct: 503 SLRYQEAVRVRDSLHEALAALQSLVLSSPNWKKKLPDIHICEAKNG-----MDVLQYSDV 557

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
           S + L S  P+         +RL+IE+ Y  +   Q  E   I+ EE   +P+D DY SL
Sbjct: 558 SFEMLASAFPECLSPYMEFSQRLKIEAVYKRHCDLQRKEIARIQKEENMSLPQDMDYISL 617

Query: 574 P-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P +LSNE +E L  ++P  L  A++++G+TPAA+  LL Y++
Sbjct: 618 PVSLSNEAREILDRVRPSTLGAATRLQGITPAAIVHLLHYVR 659


>gi|315453460|ref|YP_004073730.1| glucose inhibited division protein A-like protein [Helicobacter
           felis ATCC 49179]
 gi|315132512|emb|CBY83140.1| glucose inhibited division protein A homolog [Helicobacter felis
           ATCC 49179]
          Length = 626

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/623 (43%), Positives = 364/623 (58%), Gaps = 27/623 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EAA V AK+GA   ++T     +   SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 4   DIVVVGGGHAGLEAALVGAKMGARVHMLTLLVDNMALASCNPAIGGLGKGHLVKEIDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG +AD + +Q R+LN  KGPAVRG R Q D ++YR+  +   L   NL V Q     
Sbjct: 64  GVMGLLADKSALQCRILNASKGPAVRGTRAQIDMDIYRMEARNLALQTPNLSVSQEMAET 123

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +      + R   V+LTTGTFL+G++HIG  +   GR G+S S  L    
Sbjct: 124 LLLEGGAVVGVQTHIGKIYRAKKVILTTGTFLQGLVHIGTHQSQNGRFGESASIELSKHL 183

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                  GRLKTGT  RL G +I + + E  + D     FS  T      Q+ C +T TN
Sbjct: 184 SALGLQVGRLKTGTCPRLAGASIDFSQLEPHYGDSIPPKFSHKTHNFNPTQLPCYLTYTN 243

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH II  N+  + ++SG I+S GPRYCPSIEDKI RF ++  HQ+FLEP+  +    Y
Sbjct: 244 PNTHAIIEANLHQAPMFSGQIESVGPRYCPSIEDKICRFKDKERHQLFLEPQTRSASEYY 303

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP EIQ Q I +I GLE   I R GYAIEYD++ P +L  TLETKKI  L+LA
Sbjct: 304 VNGLSTSLPFEIQEQVIHSIKGLENAQITRYGYAIEYDFVQPTQLQHTLETKKIPNLYLA 363

Query: 367 GQINGTTGYEEAAAQGLVAGINS-------ARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           GQINGTTGYEEAAAQGL+AGIN+       A+KS        +R ++YIGVMIDDL  KG
Sbjct: 364 GQINGTTGYEEAAAQGLMAGINAALGLGLGAQKS-----FVLARNEAYIGVMIDDLVCKG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFLRSLL 478
             EPYRMFT+RAEYR+ LR DNA  RL      LG +     Q+  A+  Q    L +L 
Sbjct: 419 TQEPYRMFTARAEYRLLLREDNARLRLGAHAHALGLMRASEYQELQAQQEQINQALHTLQ 478

Query: 479 KSLVLTSKN-------LSSTSISFKQDGKTRTAYEFLSYPD-FSIQNLFSICPDARKFSS 530
            + +  +K        L+ T I+ K +G       FL+  D F   +L +     R   S
Sbjct: 479 HTTITPNKQTLEKLQALNQTPINDKCNGV------FLAGRDGFEEADLRAFFECLRNLDS 532

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           +V+E+++I   Y +Y  +Q     +++   +  IP DF++  +  L  E  EKLS  +P 
Sbjct: 533 VVLEQVKITCKYHSYIEKQSESIAKMQNLGESKIPSDFNFEKITGLGLEAIEKLSKHRPQ 592

Query: 591 NLLQASKIEGMTPAALNLLLIYI 613
            LL+AS I G+TPA + +L +Y+
Sbjct: 593 TLLEASYISGITPANIEVLQLYL 615


>gi|282879091|ref|ZP_06287851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccalis ATCC 35310]
 gi|281298825|gb|EFA91234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccalis ATCC 35310]
          Length = 626

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/626 (41%), Positives = 359/626 (57%), Gaps = 11/626 (1%)

Query: 1   MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           MIN    YDVI+IGGGHAGCEAA  +A +GAST LIT   + +G MSCNPAIGG+ KG +
Sbjct: 1   MINMKFKYDVIIIGGGHAGCEAATASANIGASTCLITMDMNKVGQMSCNPAIGGIAKGQI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           VREIDAL G MG + DA  IQFR+LN  KGPAV  PR Q DR  Y    ++ + +  NLD
Sbjct: 61  VREIDALGGQMGLITDATAIQFRMLNKGKGPAVWSPRAQCDRGKYIWEWRKVLDNTPNLD 120

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + Q E      E      +        R  +VV+T GTFL G++HIG+ ++P GR  +  
Sbjct: 121 IWQDEARELIVENGEAVGVNTVWGVEFRAKSVVITAGTFLNGLMHIGRHQLPGGRCAEPA 180

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
              L  S  +      R+KTGTP R+D +T+ ++  E+Q  +     FS+M +    +Q+
Sbjct: 181 VYHLSESISRHGIRVDRMKTGTPVRIDARTVHFEDMERQDGENDFHQFSYMGEPRKLKQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C    TN E H ++ + +  S +++G I+S GPRYCPS+E K+V F +++ H +FLEPE
Sbjct: 241 PCWTCYTNQECHEVLRQGLSDSPLFNGQIQSTGPRYCPSVETKLVTFPDKDQHPLFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y NG S+++P  IQ + I  IP      I R GYAIEYDY +P +L  TLE+K
Sbjct: 301 GECTNEMYLNGFSSSMPLHIQLEAIHKIPAFRDAKIYRAGYAIEYDYFDPTQLKRTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLFLAGQ+NGTTGYEEAA QGLVAG+N+A      +     R +SYIGV+IDDLT+K
Sbjct: 361 VLKGLFLAGQVNGTTGYEEAAGQGLVAGVNAALHCTNSEPFIMHRDESYIGVLIDDLTTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +    L    
Sbjct: 421 GVDEPYRMFTSRAEYRILLRQDDADARLTEKAYQLGLANRERYDWWMEKKESIKALLDFC 480

Query: 479 KSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFS-------IQNLFSICPDARKFS 529
               +  K +++   SI       T    + +  P  S       I  L  +    R   
Sbjct: 481 NQTPIKPKEINNFLESIGTSPLHGTSKISDLVGRPQVSLTQLAEHITTLKEMLNKPRNRK 540

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E  +I+  Y  Y  R+ + A+++       I   F YS L  LS E ++KL  + P
Sbjct: 541 EEIAEATEIKIKYKGYIEREKLMAEKMHRLRDIKIKGRFQYSELHELSTEARQKLERIDP 600

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++P+ +N+LL+ + +
Sbjct: 601 ETLAQASRIPGISPSDINVLLVLLGR 626


>gi|159030162|emb|CAO91054.1| gidA [Microcystis aeruginosa PCC 7806]
          Length = 635

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/620 (42%), Positives = 368/620 (59%), Gaps = 17/620 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 13  FDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL VI+  +A
Sbjct: 73  GGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANL-VIREAMA 131

Query: 126 -----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                G N +   +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 132 TDLILGANEQ---VLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + + E Q  D+ +  FSF  +    R Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSRMEPQPPDDEVRWFSFDPEVWIEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT   TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHLTRTTAATHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++R  YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENVQLAMLRTLPGLENCVMLRAAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+AR +   + I F R +SY+G ++DDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGLVAGINAARFALGKELIVFPREESYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +  ++ N +    +
Sbjct: 429 LREPYRMLTSRSEYRLVLRSDNADQRLTPLGREIGLIDDRRWQLFQR--KQTNIIAEKER 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
                 K     +I+  +D + +     +  + L  P     +L          +    E
Sbjct: 487 LHETRIKERDQVAIAIVKDTEQKIKGSLSLADLLRRPSLHYLDLDRYGLGNPDINLAERE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++IE  Y+ Y  RQ  +  +I     R +  D DY  +  LS E +EKL+ +KP  + Q
Sbjct: 547 GVEIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKIKPATIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +N LL+Y++
Sbjct: 607 ASRIGGVNPADINALLVYLE 626


>gi|320537815|ref|ZP_08037736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema phagedenis F0421]
 gi|320145354|gb|EFW37049.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema phagedenis F0421]
          Length = 629

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/624 (41%), Positives = 380/624 (60%), Gaps = 17/624 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA++G  T LIT    +IG +SCNP+IGG+ KG++VREIDAL
Sbjct: 8   YDVIVVGGGHAGIEAALAAARMGEQTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG++ADA  IQ+R+LN  +GPAV+ PR QAD+ LY    +  +  Q+NL + Q  V 
Sbjct: 68  GGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQKAKHALELQKNLHIYQDTVV 127

Query: 126 GF---------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                        E   + +I+      I    VVL+TGTF+ G I+IG+ +   GR+G+
Sbjct: 128 DVLSSGTSETGTVESGAVQAILTARGRTISAKAVVLSTGTFMEGKIYIGEYEAAEGRLGE 187

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  L ++  +  F  GRLKTGTP R+  K++   K E Q AD  + PFSF   ++   
Sbjct: 188 KAAIGLGSALAQKGFTLGRLKTGTPCRVLRKSVDLSKMEIQEADAIMRPFSFAAAEVHRP 247

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C I  TN  THRII EN   S ++SG I++ G RYCPS+EDK+ +F ERN HQI++E
Sbjct: 248 QATCYIAYTNEHTHRIIRENFHRSPLFSGKIQATGARYCPSVEDKVKKFPERNRHQIYIE 307

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL+T+ +Y NG+S++LPE++Q   IRTI G E V I RPGYA++Y Y++P +L   L+
Sbjct: 308 PEGLDTEELYINGLSSSLPEDVQDAMIRTIEGFESVVITRPGYAVDYAYVSPLQLGADLQ 367

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-----ARKSNK-LDCICFSRTDSYIGV 410
           T +I GLF AGQ NGT+GYEEA  QG++AGIN+     A+K+ K  +     R ++YIGV
Sbjct: 368 THRIKGLFTAGQTNGTSGYEEAGGQGIIAGINAALYSRAQKTQKPYEPFVLGRDEAYIGV 427

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL ++GV EPYRMFT+RAEYR+ LR D AD RLT     +G   +    R    I+E
Sbjct: 428 MIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQTDSAVHRVRDKIKE 487

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
            + + +  ++L +TS    +        GKT    + L  P   +  + ++   A + + 
Sbjct: 488 RSGIIAHWQTLRITSTQAEANPELQSHIGKTFA--QTLQDPTVPLSLIVNLDVQAAEHNE 545

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++   ++E  Y  Y   Q    ++++  E   IP +F Y+++  LS E + +L  ++P 
Sbjct: 546 EILHAAELEIRYEHYIIAQNKRIEKMRKMENTKIPPNFSYANISGLSTESRTRLEKVRPE 605

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
            + QA++I+G+ P+ + LL++ ++
Sbjct: 606 TIGQAARIQGIRPSDIMLLMVQLR 629


>gi|116334861|ref|YP_796388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus brevis ATCC 367]
 gi|122268460|sp|Q03N65|MNMG_LACBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116100208|gb|ABJ65357.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus brevis ATCC 367]
          Length = 636

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/627 (42%), Positives = 365/627 (58%), Gaps = 16/627 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  QDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E      ++    +  R   VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIVEDGECQGVITNTGARYRAKAVVIAAGTAARGKIIIGELMYSSGPNNSQPATKLT 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            +  K+ FD  R KTGTP R+DG TI +D+TE+Q  D     FSF T          Q+ 
Sbjct: 190 ANLPKYGFDLERFKTGTPPRVDGNTIHYDETEEQPGDVEPNHFSFTTPDSAYLDLKNQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNEKTHEIIKANLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKPRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             TD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD ++P +L PTLETK 
Sbjct: 310 RKTDEWYVQGLSTSMPEEVQQKILHSIKGLEDAQMMRPGYAIEYDVVSPYQLRPTLETKP 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVM+DDL +KG
Sbjct: 370 LKNLFTAGQTNGTSGYEEAAGQGLLAGINAGLRALGKPGFTLKRSDAYIGVMVDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I +   +R+A ++ +   L++ L 
Sbjct: 430 TKEPYRLLTSRAEYRLILRHDNADLRLTAKGHELGLISD---ERYADFLAKKATLQAELD 486

Query: 480 SL--VLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
            L  +    N      + S      QDG    A+    Y D+     F   P+ +     
Sbjct: 487 RLNQIRIKPNDEINAFVESHGDKPLQDGVLAAAFLRRPYVDYQTLLQFIDAPE-QPLDRH 545

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE ++I   YA Y  +      ++K  E + IP   DY ++  L+ E  +KL  ++P  
Sbjct: 546 IIEEIEISLKYAGYIKKAEENVAKLKRMEAKAIPAQIDYDAIDGLATEAHQKLKKIQPET 605

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           L QAS+I G+ PA + +L +YI++  +
Sbjct: 606 LAQASRISGVNPADIAILSVYIEQGKI 632


>gi|184154470|ref|YP_001842811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri JCM 1112]
 gi|183225814|dbj|BAG26331.1| cell division protein [Lactobacillus reuteri JCM 1112]
          Length = 641

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/623 (42%), Positives = 370/623 (59%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 13  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 73  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  D+    FSF T        + Q+ C
Sbjct: 193 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDKEPHHFSFDTPDSAYIPISEQLSC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 253 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 313 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKKPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + +   +R AK  ++   + + +K 
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHHVGLVSD---ERLAKMEEKKRQVAAEIKR 489

Query: 481 LVLTSKNLSSTSIS--FKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK-FSSLV 532
           L       S   ++   +  G  R      A + L  P F  Q L    P   +     V
Sbjct: 490 LEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTLAEFIPAPEQDLDRHV 549

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L
Sbjct: 550 IEQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETL 609

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G+ PA + +L +Y+++
Sbjct: 610 AQASRISGVNPADIAILSVYVRQ 632


>gi|148545138|ref|YP_001272508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri DSM 20016]
 gi|227364301|ref|ZP_03848394.1| glucose-inhibited division protein A [Lactobacillus reuteri MM2-3]
 gi|325683500|ref|ZP_08163016.1| glucose inhibited division protein A [Lactobacillus reuteri MM4-1A]
 gi|148532172|gb|ABQ84171.1| glucose inhibited division protein A [Lactobacillus reuteri DSM
           20016]
 gi|227070614|gb|EEI08944.1| glucose-inhibited division protein A [Lactobacillus reuteri MM2-3]
 gi|324977850|gb|EGC14801.1| glucose inhibited division protein A [Lactobacillus reuteri MM4-1A]
          Length = 647

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/623 (42%), Positives = 370/623 (59%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  D+    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDKEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKKPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + +   +R AK  ++   + + +K 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHHVGLVSD---ERLAKMEEKKRQVAAEIKR 495

Query: 481 LVLTSKNLSSTSIS--FKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK-FSSLV 532
           L       S   ++   +  G  R      A + L  P F  Q L    P   +     V
Sbjct: 496 LEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTLAEFIPAPEQDLDRHV 555

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L
Sbjct: 556 IEQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETL 615

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G+ PA + +L +Y+++
Sbjct: 616 AQASRISGVNPADIAILSVYVRQ 638


>gi|239617771|ref|YP_002941093.1| glucose inhibited division protein A [Kosmotoga olearia TBF 19.5.1]
 gi|239506602|gb|ACR80089.1| glucose inhibited division protein A [Kosmotoga olearia TBF 19.5.1]
          Length = 634

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 373/620 (60%), Gaps = 15/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D++VIG GHAG EA   AAK+G  T ++     T+G   CNPA+GG  KG + RE+DA
Sbjct: 9   NFDIVVIGAGHAGIEAGLAAAKMGLKTLVLAINLDTVGWAPCNPAVGGPAKGIVAREVDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G + +  DA  I  R+LN  KGPAVR  R Q D+  Y + M+R + SQENL +  G  
Sbjct: 69  LGGQIAKTTDATMINVRMLNTSKGPAVRALRAQIDKHEYSMEMKRILESQENLFIRSGIA 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E   ++ +V     + RC   V+T+GTFLRG I +G+    AGR+G+ P+ +L  
Sbjct: 129 SEILVENGKVTGVVTHFGVVYRCRAAVVTSGTFLRGKIFVGQKVFEAGRLGEFPAKALSQ 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           S     F   R KTGTPAR+ GK+I + K E+Q   +  + FS+  + ++  +   C +T
Sbjct: 189 SLETLGFTLSRFKTGTPARIQGKSIDFSKMERQDTSDEPLAFSYFDEPRVLPKDYPCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            TN  TH +I  ++K S +Y GD+K   S GPRYCPSIEDK+V+F  +  HQ+F+EPEG 
Sbjct: 249 HTNPSTHAVIRRDLKFSPLY-GDVKLIQSIGPRYCPSIEDKVVKFSSKESHQVFVEPEGK 307

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTD  Y NG+ST+LP E Q + IRT+PGLE   I+RP YA+EYDY+ P +L+PTLE+K +
Sbjct: 308 NTDEYYLNGLSTSLPFETQVEMIRTVPGLENAVIVRPAYAVEYDYVTPDQLYPTLESKLV 367

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ+ GT+GYEEAA  G+VAGIN+A K   ++     R++SYIGVMIDDL +KGV
Sbjct: 368 ENLYFAGQVIGTSGYEEAAGLGIVAGINAAAKLLGMEQFVPKRSESYIGVMIDDLVTKGV 427

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ +R DNA  RL+  G K G I +   ++     ++       L +
Sbjct: 428 DEPYRLLTSRAEYRLLIRHDNAHIRLSKYGYKYGLIPKWFYEKVLDLERQIEGEIERLNN 487

Query: 481 LVLTSKNLSSTSISFKQDG------KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +V+  K LS+ +      G       TR + + L  P  S + L    P+  +   L+ E
Sbjct: 488 VVV--KPLSTLNNKLVAAGTSPIYQSTRLS-QLLKRPQVSYEILKEFDPEPIE-DLLLRE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  R   E K  +  E  +IP   +Y  +P LS E +EKL  L+P ++ Q
Sbjct: 544 QVEIQLKYEGYILRMEQELKRFERLEMEIIPPKVNYDEVPNLSTESREKLKKLRPRSIGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           A +I G+TPA +  L +Y+K
Sbjct: 604 AMRIPGITPADIMNLSVYLK 623


>gi|302344817|ref|YP_003813170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica ATCC 25845]
 gi|302149647|gb|ADK95909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica ATCC 25845]
          Length = 623

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/627 (41%), Positives = 371/627 (59%), Gaps = 25/627 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA LGA+T L+T   + IG MSCNPA+GG+ KG +VRE+DAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANLGANTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    +  +   +NLD+ Q +  
Sbjct: 65  GGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIFQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  I       I   TV++T GTFL G++HIGK K+  GR  +   ++   S
Sbjct: 125 ELLVENGKVLGIKTIWGIDIYARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHNFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C    T
Sbjct: 185 ITRHGIRADRMKTGTPVRIDRRSVHFDEMEPQPGETDYHQFSFYGPHRHLPQLPCWTCNT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG++T+ +
Sbjct: 245 NEEAHEVLRRGVADSPLFNGQIQSTGPRYCPSIETKLVTFPDKSSHPLFLEPEGVDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P E+Q   I  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPWEVQLDAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKQSLESKVIEGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QGLVAGIN+A      D    +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGLVAGINAALLCAGKDPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT     +G     +Q R+  ++Q+   +  +L     TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERAYNIGIA---KQDRYDWWMQKKEHINRILDFCNNTS 481

Query: 486 ----------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------- 528
                     ++L ++ I     G T+   + ++ P  + +NL ++ P  ++        
Sbjct: 482 VKPEVVNGFLEHLGTSPIK----GATKIV-DLVARPQVNFENLSAVIPSLKEAIEASPNR 536

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              + E  +I+  Y  Y  R+ + A++++  E   I   F YS L  LS E ++KL  ++
Sbjct: 537 KEEIAEAAEIKLKYKGYIDRERVFAEKMRRLEDIKIKGHFKYSELHDLSTECRQKLEQIQ 596

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 597 PETLAQASRIPGVSPSDINVLLVLMGR 623


>gi|302653989|ref|XP_003018808.1| hypothetical protein TRV_07168 [Trichophyton verrucosum HKI 0517]
 gi|291182486|gb|EFE38163.1| hypothetical protein TRV_07168 [Trichophyton verrucosum HKI 0517]
          Length = 605

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/579 (43%), Positives = 352/579 (60%), Gaps = 23/579 (3%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+     L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRSLYKKYMLEELSKTPGL 60

Query: 118 DVIQGEVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           ++++G+VA            N  +  I  + ++   MI    V++TTGTFL G IHIG  
Sbjct: 61  NIVEGKVADIVISKENMTSLNGSQGEIVGVRLESGEMIPTQKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 VFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFS 180

Query: 228 FMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           ++ D +      Q+ C    TN  +H ++ +N+  S      +   GPRYCPS+E KI+R
Sbjct: 181 YLNDSVQIGDKGQLNCWAAHTNEASHAVVRDNLNKSIHIRETVN--GPRYCPSLESKIIR 238

Query: 285 FGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           F ++  H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EY
Sbjct: 239 FKDKPRHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEY 298

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L PTLETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR
Sbjct: 299 DYVDPRSLRPTLETKLIGGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQLKPPMTLSR 358

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            D +IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R ++
Sbjct: 359 ADGFIGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRQ 418

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F +  ++ ++L++LL++    S   S      + D   R+A+E LS+   S+ ++     
Sbjct: 419 FNETKEQMSYLQALLENTKYPSTVWSRKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIE 478

Query: 524 DA-------RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            A         FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  L
Sbjct: 479 SAPGTIHSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGL 538

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           S E ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 539 STEERQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 577


>gi|41058589|gb|AAR99281.1| glucose-inhibited division protein A [Candidatus Blochmannia
           nearcticus]
          Length = 590

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/587 (45%), Positives = 367/587 (62%), Gaps = 19/587 (3%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G MSCNPAIGG+GKGHLV+EIDA+ GLM    D +GIQFR LN  KG AVR  R QAD+ 
Sbjct: 1   GQMSCNPAIGGIGKGHLVKEIDAMGGLMACAIDESGIQFRKLNSSKGVAVRATRAQADKI 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRG 160
           LYR  ++ ++  QE L ++Q  V     E N I  ++     M  R  +VVLTTGTFL G
Sbjct: 61  LYRQVIRNKLEYQECLLIVQASVEDLIIENNKIVGVITPKIGMKFRAMSVVLTTGTFLNG 120

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
            I+IG      GR GD  S+SL +  +K      GRLKTGT  R+  K + +D   KQ +
Sbjct: 121 RIYIGLNNFSGGRAGDIGSSSLLSIRLKELSSRVGRLKTGTSPRIHSKGVNFDCLHKQHS 180

Query: 220 DERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
           D  +  FSF+     + RQ+ C IT TN +TH I+  N+  S +YSG +K   PRYCPSI
Sbjct: 181 DNPVPVFSFIGSVEQHPRQVPCYITHTNSKTHDIVRSNLHQSPMYSGLMKGVSPRYCPSI 240

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           EDK+VRF +R+ HQIFLEPEGL T  +Y NGIST+LP  IQ Q I+++ GLE  NIIRPG
Sbjct: 241 EDKVVRFSDRSAHQIFLEPEGLTTPEIYLNGISTSLPFNIQIQMIKSVQGLENANIIRPG 300

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   + 
Sbjct: 301 YAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQDKEG 360

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
               R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  + G I E
Sbjct: 361 WYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTAIAYRFGLIDE 420

Query: 459 -------RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTRTAYEFL 508
                  R++++  K +Q      + +    + +K L++   T ++ + +G        +
Sbjct: 421 FLWENFCRKKEKIEKELQRLR--NTYIAPHSVDAKQLNALLKTPLTHEINGAELLKRPEI 478

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           SY   S  ++F +     +    V ++++I+  Y  Y  RQ  +       E  L+P + 
Sbjct: 479 SYIKLSQLSVFGLS----ELDKQVFDQIEIQIKYEGYIRRQQEDIDRYLCNENTLLPINM 534

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           D++ +  LS E+ EKL+  +P ++ QAS+I G+TPAA++ LL+++KK
Sbjct: 535 DFNIVSGLSREVIEKLNQCRPCSIGQASRIPGITPAAISNLLVWLKK 581


>gi|219847173|ref|YP_002461606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroflexus aggregans DSM 9485]
 gi|219541432|gb|ACL23170.1| glucose inhibited division protein A [Chloroflexus aggregans DSM
           9485]
          Length = 656

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/645 (41%), Positives = 366/645 (56%), Gaps = 29/645 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  T L+T     +  MSCNP+IGG  KGHLVREIDA+
Sbjct: 5   YDVIVVGAGHAGCEAAHAAARLGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAM 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGR+ D + IQ R+LN  KGPAV+  R Q D+ LY   M+  +    NLD+ Q  V 
Sbjct: 65  GGLMGRITDRSAIQIRLLNESKGPAVQSLRAQCDKRLYARLMKETLERVPNLDLRQAMVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +  ++  R     V+LTTGTFLRG    G+    AGR G++P+ +L 
Sbjct: 125 RIAPPNADTQCFTVTTHTGWRYLAPAVILTTGTFLRGRAITGEAVWGAGRAGEAPAMALS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---------- 233
                  F   RLKTGTP RL   TI +  TE Q   ++ + F     ++          
Sbjct: 185 EDLAALGFPLVRLKTGTPPRLAAATIDFSLTELQPGSDKPLAFGHYYAELGETIPPPEYH 244

Query: 234 --------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
                            Q+ C    T  E H II +N+  + ++SG I+  GPRYCPSIE
Sbjct: 245 GPPAPVYPHPQLNGWRPQLPCYQVHTTPEFHAIIRQNLHRAPLFSGIIEGVGPRYCPSIE 304

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           DKIVRF ++  H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L  V ++R GY
Sbjct: 305 DKIVRFADKERHSLFLEPEGWTTAEVYVQGCNTSLPEDVQWAMLRSIPALRNVELMRIGY 364

Query: 340 AIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
           AIEYD +   E+   ++T+++ GLF AGQINGTTGYEEAAAQGL+AGIN+A        +
Sbjct: 365 AIEYDAVATGEITADMQTRRLRGLFFAGQINGTTGYEEAAAQGLMAGINAAHYVQGKPPV 424

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GE 458
              R ++YIGV+IDDLT+K + EPYRMFTSRAEYR+ LR DNAD RLTP+  +LG + G+
Sbjct: 425 ILGRAEAYIGVLIDDLTTKEIREPYRMFTSRAEYRLLLRGDNADLRLTPLAYRLGLVDGD 484

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQ 516
           R      +  Q    L+ + +  +  S  +++   +   K   +  T  E L+ PD S +
Sbjct: 485 RAAVVEQRRRQAEQALQQMHERCIFPSAAINNALEAQGVKPLNQPATVAEVLARPDVSYR 544

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            L +  PD    S  V E+++I   Y  Y  RQ  E   ++  E R IP DFDY++LP L
Sbjct: 545 QLRTAIPDLPDLSPSVAEQVEIGCKYRGYIARQEREVARMQKMEHRRIPPDFDYTTLPGL 604

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            NE ++ L   +P  L QA ++ G+ PA + ++L  +++  V  +
Sbjct: 605 RNEARQVLMRFRPATLGQAGRLAGINPADVAIILFALERRQVHTD 649


>gi|294675111|ref|YP_003575727.1| glucose-inhibited division protein A [Prevotella ruminicola 23]
 gi|294474361|gb|ADE83750.1| glucose-inhibited division protein A [Prevotella ruminicola 23]
          Length = 637

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/638 (40%), Positives = 375/638 (58%), Gaps = 33/638 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  +A +GA T L+T   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVIVIGGGHAGCEAACASANMGAKTCLVTMDMNKIAQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LNV KGPAV  PR Q DR  +    +R I   +NLDV Q +  
Sbjct: 65  GGQMGLVTDATSIQFRMLNVGKGPAVWSPRAQCDRGKFIWEWRRTIDETDNLDVWQDQAD 124

Query: 126 GFNTE------KNIISSIVMQD--NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
              TE         I ++ ++    + I   ++V+T GTFL G++HIG+  +P GR+ + 
Sbjct: 125 ELLTEPISGSESGAIRAVGVRTIWGTEIYAKSIVITAGTFLNGLMHIGRKMVPGGRIAEP 184

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
                  S  +      R+KTGTP R+D +++ ++  E Q  + R   FS+M      +Q
Sbjct: 185 AVPHFTESITRHGVTAARMKTGTPVRIDKRSVHFEDLEVQPGETRPYQFSYMNKGGALKQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C    TN E H I+   +  S +Y+G I+S GPRYCPSIE K+V F +R+ H +FLEP
Sbjct: 245 LPCWTVNTNAEVHEILKSGLADSPLYNGQIQSIGPRYCPSIETKLVTFPDRDKHPLFLEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+ +Y NG S++LP ++Q + ++ +P    V + RPGYAIEYD+ +P +L  +LE+
Sbjct: 305 EGEDTNEMYLNGFSSSLPMDVQIEALKKMPAFRDVKVYRPGYAIEYDFFDPTQLNHSLES 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK--------SNKLDCICFSRTDSYIG 409
           K I GLF+AGQ+NGTTGYEEA  QG +AGIN+A K        +NK       R ++YIG
Sbjct: 365 KIIDGLFMAGQVNGTTGYEEAGGQGTLAGINAALKAGCAGSDTANKQ--FVLHRDEAYIG 422

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL +KGV EPYRMFTSRAEYRI LR D+AD RLT    +LG + + R   + +  Q
Sbjct: 423 VLIDDLVTKGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYELGIVKKDRYDWWLQKKQ 482

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPD 524
               + +  ++  +  + ++S   + +  G T   +     + ++ P  +++NL  + P 
Sbjct: 483 AIEEIEAFCQNFAIKPRLINS---ALEALGTTPLQFGCKLSDLVNRPQLNLKNLSEVIPS 539

Query: 525 ARKF-------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
            ++           + E  +I   Y  Y  R+ + A ++   E   I   F+Y  L  LS
Sbjct: 540 LKEALDRPSNRKEEIAEAAEIRMKYKGYIERERLVADKMHRLENIRIKGRFNYEELQGLS 599

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            E ++KL  ++P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 600 TECRQKLQKIQPETLAQASRIPGVSPSDINVLLVLMGR 637


>gi|5672641|dbj|BAA82679.1| 77%-identity [Bacillus halodurans]
          Length = 579

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/566 (44%), Positives = 352/566 (62%), Gaps = 4/566 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   EFDVIVVGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  +ENL + QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEEENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R   VV+TTGT+LRG I IG L   +G     PS +L  
Sbjct: 127 ERLIIEDGECRGVITNTGAEYRAKAVVVTTGTYLRGKIIIGDLAYESGPNNMQPSINLSY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++G+TI +DKTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFEMVRFKTGTPPRVNGETIDYDKTEIQPGDEVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 247 TGDKTHQIINDNLGRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRHTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +++IPGLEK  ++RPGYAIEYD I P +L+PTLETKK+ GLF
Sbjct: 307 VYVQGLSTSLPEDVQLDVLKSIPGLEKARMMRPGYAIEYDAIVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAALRVQGKDGLILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G ++G I   R +RF +   +    +  L+S+ + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEKGYEIGLIARERYERFCEKKAQIAAEKKRLESITVK 486

Query: 485 SKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
                +  +        + A +   FL  P+ + +++  + P   ++ S+ V E+++I+ 
Sbjct: 487 PSKEVNALLEEVGSAPLKEAVQANVFLKRPEVTYEHVAKVIPAPEQELSADVAEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPK 566
            Y  Y  + + + +  K    + IP+
Sbjct: 547 KYEGYISKMLQQVERAKKMNDKKIPR 572


>gi|299142032|ref|ZP_07035166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris C735]
 gi|298576494|gb|EFI48366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris C735]
          Length = 623

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/622 (41%), Positives = 363/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA +A +GA T LIT   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   ENLD+ Q +  
Sbjct: 65  GGNMGIVTDRTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDHTENLDIWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N    +           ++V+T GTFL G++H+G+  I  GR  +   +    S
Sbjct: 125 ELIVKNNEAVGVKTIWGVTFYAKSIVVTAGTFLNGLMHVGRKMIEGGRCAEPAVHHFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             ++   + R+KTGTP R+D +T+ +D+ E+Q  D     FS+M +    RQ+ C  T T
Sbjct: 185 ITRWGITSARMKTGTPIRIDKRTVHFDEMEEQEGDTDFHQFSYMGEHRILRQLSCWTTYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H  + E +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +T+ +
Sbjct: 245 NKEVHETLREGLTDSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGEDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P +IQ   I  IP    V I RPGYAIEYDY +P +L  +LE+K + GLF 
Sbjct: 305 YLNGFSSSMPMDIQLAAIHKIPAFRDVKIYRPGYAIEYDYFDPTQLKHSLESKILPGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG+VAGIN+A      +     R  SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIVAGINAALHCTGSEPFIMQRDQSYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT I   LG     R   + +  +  + L    K   + +
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEIAYDLGIAKRNRYDWWHQKKEAVHRLIHFCKEYPIKA 484

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSL-------VI 533
             ++S   S    G T         + ++ P  ++QNL  I P+ ++   +       + 
Sbjct: 485 SEINSQLESL---GTTPLRAGCKLSDLIARPHLTLQNLSEIIPELKEALLMPENRKEEIA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A ++   E   I   F YS L  +S E ++KL  + P  L 
Sbjct: 542 EAAEIQMKYQGYIERERIIADKMHRLENIKIKGRFKYSELQEISTEGRQKLEKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LLI + +
Sbjct: 602 QASRIPGVSPSDINVLLILLGR 623


>gi|307564761|ref|ZP_07627289.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella amnii CRIS 21A-A]
 gi|307346483|gb|EFN91792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella amnii CRIS 21A-A]
          Length = 631

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/635 (41%), Positives = 383/635 (60%), Gaps = 33/635 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T L+T   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANMGAKTCLLTMDMNKIAQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + DA+ IQFR+LN  KGPAV  PR Q DR+ Y    ++ I + ENL + Q +  
Sbjct: 65  GGYMGLITDASSIQFRMLNRSKGPAVWSPRAQCDRQKYIDNWRKTIDNTENLYIFQDQAT 124

Query: 126 GFNTEKNIISSIVMQDNSMIR--------CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
               EK+  S    Q    ++          TV++T GTFL G++HIG  ++  GR+ + 
Sbjct: 125 ELLVEKSNTSKEAAQRVIGVKTIWGIDMYARTVIITAGTFLNGLMHIGNKQVEGGRISEP 184

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
             ++  +S  ++     R+KTGTP R+D +++ ++ TEKQ  D     FSF   + +  Q
Sbjct: 185 AVHNFTDSITRWGITVARMKTGTPVRIDKRSVHFEYTEKQPGDSDYHQFSFFGKQRSLPQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C    TN + HRII  ++  + I +G I+S GPRYCPSIE K++ F +++ H +FLEP
Sbjct: 245 MPCWTFNTNEKAHRIIRNSLSEAPILNGQIQSTGPRYCPSIETKLITFPDKSSHPLFLEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG++T+ +Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L P+LE+
Sbjct: 305 EGVDTNEMYLNGFSSSMPWDIQIEAIHQIPALSDAKIYRPGYAIEYDYFDPTQLKPSLES 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQ+NGTTGYEEA  QG+VAGIN+A   +        R +SYIGV+IDDLT+
Sbjct: 365 KIIEGLFFAGQVNGTTGYEEAGGQGIVAGINAANLCSNNQPFIMKRDESYIGVLIDDLTT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ-------- 469
           KGV EPYRMFTSRAEYRI LR D+AD RLT     LG     +++R+  +++        
Sbjct: 425 KGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYTLGIA---KRERYDWWLEKKEHILRI 481

Query: 470 EYNFLRSLLKSLVLTS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
           E  F  + +K   + S  + + S+ I     G T+   + +  P+ +I +L +I P  ++
Sbjct: 482 ENFFYNNTVKPEYVNSLLEKIGSSPIK----GTTKLI-DLIGRPNVTITDLANILPTLKE 536

Query: 528 F-------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                      +IE  +I+  Y  Y  R+ I A+++   E   I   F+Y+ +  LS E 
Sbjct: 537 CLETCTNRKEEIIEATEIKMKYKGYIERERIFAEKMHRLENIKIKGHFNYNKIHDLSTEC 596

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++KL  ++P  L QAS+I G++P  +N+LLI + +
Sbjct: 597 RQKLERIQPETLAQASRIPGVSPNDINVLLILMGR 631


>gi|145347894|ref|XP_001418395.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578624|gb|ABO96688.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 693

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/631 (41%), Positives = 375/631 (59%), Gaps = 32/631 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A+ GAST L+T     +    CNPA+GG  K  LV EIDAL
Sbjct: 59  YDVIVVGAGHAGCEAALASARAGASTLLLTLNLDRVAWQPCNPAVGGPAKSQLVHEIDAL 118

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG ++D   +Q RVLN  +GPAV   R Q D+  Y   M+  + ++ NL + +G   
Sbjct: 119 GGAMGIISDKTYLQKRVLNASRGPAVWALRAQTDKWEYSREMRTTLEAEPNLSIREG--- 175

Query: 126 GFNTEKNIISSIVMQDNSMIR-----------CSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                  +++ +V+  N  +R             +VVLTTGTF+ G I +G+  + AGR 
Sbjct: 176 -------MVTELVLGTNDDVRGVRTHFGMEFEAPSVVLTTGTFMGGQIWVGRKTLAAGRA 228

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KI 233
           G++PS  L     +  F+  RLKTGTPAR+D ++I +   E+Q  DE +  FSF  D  +
Sbjct: 229 GEAPSEGLTEYLQEIGFEIDRLKTGTPARVDSRSIDYTNLEEQPGDEDMRWFSFDEDAHV 288

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +TRT   TH++I +N+  +  Y G + + GPRYCPSIEDKIVRF ++  HQI
Sbjct: 289 VREQMACHMTRTTAATHKLIQDNLLETPTYGGWVGAKGPRYCPSIEDKIVRFADKESHQI 348

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG     VY  G ST LPE +Q + +RT+PGLE   I+RP YA+EYD++   +  P
Sbjct: 349 FLEPEGRTVPEVYVQGFSTGLPETLQLELLRTLPGLENCKILRPAYAVEYDFLPAYQCKP 408

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-----KSNKLDCICFSRTDSYI 408
           TLETKKISGLF +GQINGTTGYEEAAAQGL+AGIN+A+      SN    +   R  SY+
Sbjct: 409 TLETKKISGLFFSGQINGTTGYEEAAAQGLLAGINAAQLAKGGASNGAKELILPREGSYL 468

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G ++DDL +K + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I + R  +F K  
Sbjct: 469 GTLVDDLCTKDLREPYRMLTSRSEYRLVLRSDNADMRLTPLGREVGLISDARWAKFEKKR 528

Query: 469 QEYNFLRSLLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICP 523
              +   + L+S  L  K+     +  +S     ++ T  E L  P   +S+   F    
Sbjct: 529 DAVDNEMARLQSTRLNVKDEFCQRALDVSGSGSRQSYTLEELLRRPQVPYSMLEEFGQGN 588

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
                +    E ++I   Y+ +  RQ ++ +    +  + IP D DY+S+  L  E +EK
Sbjct: 589 VDAPLTRWEAEAVEIRVKYSGFIKRQELQVERESSKFGKPIPDDVDYASISTLRMEAREK 648

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L+ ++P  + QAS+I G+TPA ++ LL++++
Sbjct: 649 LARVRPATIGQASRIGGVTPADVSSLLVHLE 679


>gi|258648858|ref|ZP_05736327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella tannerae ATCC 51259]
 gi|260850878|gb|EEX70747.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella tannerae ATCC 51259]
          Length = 625

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/620 (43%), Positives = 374/620 (60%), Gaps = 17/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG GHAGCEAA  AA +GA+T LIT   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 6   SYDVLVIGAGHAGCEAAYAAATMGANTCLITIDMNKIAQMSCNPAIGGIAKGQIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG + D A IQFR+LN  KGPA+  PR Q DR  Y LAM+  +    NL + Q EV
Sbjct: 66  LGGLMGEITDLATIQFRILNRSKGPAMWSPRAQCDRMQYSLAMRERLEQTPNLHIWQDEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    + + +   V++T GTFL G++HIG+  +  GR  +  +  L +
Sbjct: 126 TELLVEHERVVGVRTIWDIVFQAKAVIITAGTFLNGLMHIGRKMVEGGRCAEPAAKFLTD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K      R+KTGTP R+D +++  D+ E +  +     FS++  +   +Q+ C    
Sbjct: 186 SIAKNGISYARMKTGTPVRIDARSVHLDEMEIEPGEMDFHRFSYIGTERKLKQMVCWTCY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H ++ + +  S +Y+G I S GPRYCPSIE K+V F +R  H +FLEPEG +T+ 
Sbjct: 246 TNPEVHAVLEKALPDSPLYNGQIDSIGPRYCPSIETKLVTFPDREQHPLFLEPEGTSTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP   Q + +R IP    V + RPGYAIEYD+ +P +L  TLE+K I+GLF
Sbjct: 306 LYLNGFSSSLPLHAQLEALRKIPCFRDVALFRPGYAIEYDFFDPTQLKHTLESKVINGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGTTGYEEAA QGLVAGIN+    +        R ++YIGV+IDDL +KGV EPY
Sbjct: 366 LAGQVNGTTGYEEAAGQGLVAGINAVLLLSGRPAFTLRRDEAYIGVLIDDLVTKGVDEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVL 483
           RMFTSRAEYRI LR DNAD RLTP  ++ G     R  RF +K  Q    L +++ +   
Sbjct: 426 RMFTSRAEYRILLRQDNADIRLTPYAIQFGLASSERIHRFESKKAQ----LENIITTAQY 481

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIER-- 535
           TS    + +   ++ G T       AY+ ++ P+ ++  L    P  ++   ++  +R  
Sbjct: 482 TSIKPDNINTYLEEIGSTLLRRGCKAYDLVTRPEITLSELAKHTPALSKTLDAVSSDREE 541

Query: 536 ----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
                +IE  Y+ Y  R+   A +I+  E   I   FDYS+L  LS E ++KLS + P  
Sbjct: 542 TIEAAEIEIKYSGYIARERQLADKIQRLENIKIRGVFDYSTLHQLSTEARQKLSKIDPET 601

Query: 592 LLQASKIEGMTPAALNLLLI 611
           L QAS+I G++P+ +++LL+
Sbjct: 602 LAQASRIPGISPSDISVLLL 621


>gi|313899762|ref|ZP_07833265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. HGF2]
 gi|312955377|gb|EFR37042.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. HGF2]
          Length = 624

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/616 (41%), Positives = 375/616 (60%), Gaps = 11/616 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L  +T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLKKTTILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ ++L QE+L++ +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLEYKRYMQDKLLQQEHLEIREMCVEE 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   IS +  +D +++ C  +++TTGTF+   + +G     +G   +  + +L  S 
Sbjct: 123 VLAKDGRISGVRQKDGTVVNCRALIMTTGTFMSSTVLVGHTSTLSGPEDEPTTENLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGITR 244
                +T RLKTGTPAR+   +I + KT  Q   +  I FS  T +I   ++Q  C +T 
Sbjct: 183 RNLGIETFRLKTGTPARVRTASIDFSKTAVQPGTDEFICFSEDTKEIRPFDQQAVCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II  N+K SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TTAKTHDIINSNLKRSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++PGLE   I +  YAIEYD I+P +  PTLE K I  L+
Sbjct: 303 TYVQGFSTSMPYDVQEAMLHSLPGLENCTIEKYAYAIEYDAIDPLQCKPTLENKIIENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+ RK +  + +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLMAGINAVRKLDHKEPLILHRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+  G + G I + R  R+ K +Q    + S L S+  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADARLSEYGYETGLISDERYARYQKKMQNIEEMISYLASVRFT 482

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K+     L    +   ++G   +A E L  P  +I  L       R+F   + + ++IE
Sbjct: 483 PKSTVNGLLERLGLDVLKEGI--SAAELLKRPGITIALLEPYL--EREFDPAIAKLVEIE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +A+ ++  +K  +P+ FDY+ +  LS E ++KL+ ++P  + QAS+I 
Sbjct: 539 IRYEGYIKKAKRDAEHLRAMDKVCLPERFDYNQVVNLSLEARQKLNKVQPLTMGQASRIS 598

Query: 600 GMTPAALNLLLIYIKK 615
           G+ PA + +L +++++
Sbjct: 599 GVNPADIAVLAVFMEQ 614


>gi|281424807|ref|ZP_06255720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris F0302]
 gi|281401177|gb|EFB32008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris F0302]
          Length = 623

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/622 (41%), Positives = 364/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA +A +GA T LIT   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   ENLD+ Q +  
Sbjct: 65  GGNMGIVTDRTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDHTENLDIWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N    +           ++V+T GTFL G++H+G+  I  GR  +   +    S
Sbjct: 125 ELIVKNNEAVGVKTIWGVTFYAKSIVVTAGTFLNGLMHVGRKMIEGGRCAEPAVHHFTGS 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             ++   + R+KTGTP R+D +T+ +D+ E+Q  D     FS+M +    RQ+ C  T T
Sbjct: 185 ITRWGITSARMKTGTPIRIDKRTVHFDEMEEQKGDTDFHQFSYMGEHRILRQLSCWTTYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H  + + +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +T+ +
Sbjct: 245 NKEVHETLRKGLTDSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGEDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P +IQ   I  IP    V I RPGYAIEYDY +P +L  +LE+K + GLF 
Sbjct: 305 YLNGFSSSMPMDIQLAAIHKIPAFRDVKIYRPGYAIEYDYFDPTQLKHSLESKILPGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG+VAGIN+A      +     R  SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIVAGINAALHCTGSEPFIMQRDQSYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT I   LG     R   + +  +  + L    K   + +
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEIAYNLGIAKRNRYDWWHQKKEAVHRLIHFCKEYPIKA 484

Query: 486 KNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSL-------VI 533
             ++S   S    G T         + ++ P  ++QNL  I P+ ++   +       + 
Sbjct: 485 SEINSQLESL---GTTPLRAGCKLSDLIARPHLTLQNLSEIIPELKEALQIPENRKEEIA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ I A ++   E   I   F+YS L  +S E ++KL  + P  L 
Sbjct: 542 EATEIQMKYQGYIERERIIADKMHRLENIKIKGRFNYSELQEISTEGRKKLEKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LLI + +
Sbjct: 602 QASRIPGVSPSDINVLLILLGR 623


>gi|260662532|ref|ZP_05863427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553223|gb|EEX26166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum 28-3-CHN]
          Length = 644

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/624 (41%), Positives = 366/624 (58%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 22  DYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGVVVREIDA 81

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  ++NL + QG V
Sbjct: 82  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKWTIEKEKNLTLRQGVV 141

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 142 DDLIVEDGTVKGVITNTGAAYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKAAVKLSE 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R+DG TI + KTE+Q  D+    FSF T   +      QI  
Sbjct: 202 ALERLGFDLQRFKTGTPPRVDGNTIDYSKTEEQPGDQTPNHFSFDTPDTSYIPVKDQISS 261

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH I+  N+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 262 WLTYTNPTTHEILRNNLDRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQVFLEPEGR 321

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQHQ I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 322 DTDEFYLDGLSTSMPEEIQHQMIHSVAGLEHAELMRPGYAIEYDVVAPYQLKATLETKLV 381

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + L+ AGQ NGT+GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 382 NNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 441

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R     +  Q      + LK 
Sbjct: 442 KEPYRLLTSRAEYRLILRHDNADLRLMEKGHAIGLVSDERLAAMEEKKQRVEDEIARLKD 501

Query: 481 L-VLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             +   + + +  ++      +D     A+    Y D+     F   P A +     +E+
Sbjct: 502 FRIKPGEEIDAFVVAHGDKPLKDAIAADAFLRRPYVDYPTLLKFVDAP-AVELDRQEVEQ 560

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  + + +K  E + IP D DY ++  L+ E ++KL  ++P  L QA
Sbjct: 561 VEIQLKYAGYIEKEEAKIERLKRMEAKRIPADIDYQAIEGLATEGRQKLEQIRPTTLAQA 620

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
           S+I G+ PA L +L +Y+++  +K
Sbjct: 621 SRISGVNPADLAILSVYLRQGKLK 644


>gi|269837669|ref|YP_003319897.1| glucose-inhibited division protein A [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786932|gb|ACZ39075.1| glucose-inhibited division protein A [Sphaerobacter thermophilus
           DSM 20745]
          Length = 663

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/652 (39%), Positives = 377/652 (57%), Gaps = 40/652 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIG GHAGCEAA  +A+ G +T ++T     IG M CNP+IGG  KGHLVRE+DAL
Sbjct: 8   FDVIVIGAGHAGCEAALASARAGCTTLVLTPNLDRIGFMPCNPSIGGPAKGHLVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAV+ PR QAD+ LY +AM+  +  Q  L + Q  V 
Sbjct: 68  GGEMGRAIDRTAIQIRMLNTSKGPAVQAPRAQADKMLYPMAMKEALERQPRLTLRQEAVT 127

Query: 126 GFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                    ++ + ++     +      VV+T GTFLRG +  G+ +   GR GD  + +
Sbjct: 128 DIELVTAGGRHRVQAVRTDAGNRYLAGAVVVTAGTFLRGRMIAGEWRAAGGRAGDPAATA 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR----- 236
           L  S         RLKTGTP R+D ++I + K E Q   +R + FSF  D    R     
Sbjct: 188 LSASLSDLGIRLRRLKTGTPPRIDARSIDFSKAEVQTGSDRPLWFSF--DGAQGRIERLE 245

Query: 237 ----------------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
                           Q+ C +  TN  TH II  NI  + +++G I++ G RYCPSIED
Sbjct: 246 LPPLPIYPGITDGWRVQMPCYLIHTNPATHDIIAANIDRAPMFNGTIQAVGTRYCPSIED 305

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           KIVRF ++  H +FLEPEG  T  VY  G +T+LP+++Q  F+RTIP L +  I R GYA
Sbjct: 306 KIVRFRDKPSHGLFLEPEGWRTTEVYVQGANTSLPQDVQLAFLRTIPALAEATITRYGYA 365

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
           +EYD I+  EL  TL  +++ GLF AGQ+ GT+GYEEAA QG+VAG+N+A  +   + + 
Sbjct: 366 VEYDAIDSSELTRTLAARRVDGLFFAGQVCGTSGYEEAAGQGIVAGLNAACFTQGAEPLV 425

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R  SYIGVMIDDLT++  +EPYRM TSRAE+R+ LR DNA+ RL+ I  + G I    
Sbjct: 426 LRRDQSYIGVMIDDLTTQEFVEPYRMLTSRAEHRLLLRCDNAEARLSDIAYRFGLIS--- 482

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDG-----KTRTAYEFLSYPDFS 514
           ++R+     E   +   L  L     +++  T+ + ++ G     + +TA ++L  P+  
Sbjct: 483 RERWEAVQAESRIITETLARLAAHHLSMNPRTAEALERAGLPPLARNQTALDYLRRPEVR 542

Query: 515 IQNLFSIC----PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
            + L S+      D+    S + ER+++E+ Y AY  +++   + I+  E+R IP   DY
Sbjct: 543 YEALASVLEALGADSLSVPSRLAERIEVEARYEAYIEKELARVERIRHLEERPIPDGIDY 602

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++L  L NE +EKL+  +P  L QAS+I G+TP  + +L++++++    + E
Sbjct: 603 TALAGLRNEAREKLARFRPATLGQASRIAGVTPGDVAVLMVHLERGAASIEE 654


>gi|184156314|ref|YP_001844654.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum IFO 3956]
 gi|227514111|ref|ZP_03944160.1| glucose-inhibited division protein A [Lactobacillus fermentum ATCC
           14931]
 gi|183227658|dbj|BAG28174.1| glucose inhibited division protein [Lactobacillus fermentum IFO
           3956]
 gi|227087482|gb|EEI22794.1| glucose-inhibited division protein A [Lactobacillus fermentum ATCC
           14931]
 gi|299783730|gb|ADJ41728.1| Glucose inhibited division protein A [Lactobacillus fermentum CECT
           5716]
          Length = 634

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/624 (42%), Positives = 363/624 (58%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 12  DYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGVVVREIDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  ++NL + QG V
Sbjct: 72  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKWTIEKEKNLTLRQGVV 131

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 132 DDLIVEDGTVKGVITNTGAAYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKAAVKLSE 191

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R+DG TI + KTE+Q  D+    FSF T   +      QI  
Sbjct: 192 ALERLGFDLQRFKTGTPPRVDGNTIDYSKTEEQPGDQTPNHFSFDTPDTSYIPVKDQISS 251

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH I+  N+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 252 WLTYTNPTTHEILRNNLDRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQVFLEPEGR 311

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQHQ I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 312 DTDEFYLDGLSTSMPEEIQHQMIHSVAGLEHAELMRPGYAIEYDVVAPYQLKATLETKLV 371

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + L+ AGQ NGT+GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 372 NNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 431

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R     +  Q      + LK 
Sbjct: 432 KEPYRLLTSRAEYRLILRHDNADLRLMEKGHAIGLVSDERLAAMEEKKQRVEDEIARLKD 491

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYP--DFSIQNLFSICPDARKFSSLVIER 535
             +         +    D   + A     FL  P  D+     F   P A +     +E+
Sbjct: 492 FRIKPGEEIDAFVVAHGDKPLKDAIAADAFLRRPYVDYPTLLKFVDAP-AVELDRQEVEQ 550

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  + + +K  E + IP D DY ++  L+ E ++KL  ++P  L QA
Sbjct: 551 VEIQLKYAGYIEKEEAKIERLKRMEAKRIPADIDYQAIEGLATEGRQKLEQIRPTTLAQA 610

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
           S+I G+ PA L +L +Y+++  +K
Sbjct: 611 SRISGVNPADLAILSVYLRQGKLK 634


>gi|297588068|ref|ZP_06946712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ATCC 53516]
 gi|297574757|gb|EFH93477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ATCC 53516]
          Length = 627

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/616 (41%), Positives = 371/616 (60%), Gaps = 9/616 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E+DAL
Sbjct: 10  YDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKEVDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+ EV 
Sbjct: 70  GGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIEAEVV 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N I S+     ++     V+L TGT+L+G++ +G+    +G  G   S  L +S
Sbjct: 130 DIGVEDNKIKSVTTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKKLSDS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGIT 243
                 +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  C +T
Sbjct: 190 LKNLGIELRRFKTGTPARVHKDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQENCYLT 249

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEGL+T 
Sbjct: 250 YTTHKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEGLSTK 309

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +I+ L
Sbjct: 310 EMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLEINNL 369

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG  EP
Sbjct: 370 FFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKGTNEP 429

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LKS+++
Sbjct: 430 YRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLKSIMV 489

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSY---PDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T    ++  +      + +T    L     P+ +         +  +    +  RLQ+E+
Sbjct: 490 TPTEETNEKLRKLGSSELKTGINLLDLIKRPELTYDKTEEFDVNRPELPRYL--RLQVET 547

Query: 541 --SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS+I
Sbjct: 548 HIKYEGYIAKQMSQIKQFKKLENRKLYMIEDYKEVMGLSNEAVQKLNDIKPESLGQASRI 607

Query: 599 EGMTPAALNLLLIYIK 614
            G++P+ +N+LLIY++
Sbjct: 608 SGVSPSDINVLLIYME 623


>gi|166368239|ref|YP_001660512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcystis aeruginosa NIES-843]
 gi|189039347|sp|B0JGQ4|MNMG_MICAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166090612|dbj|BAG05320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Microcystis aeruginosa NIES-843]
          Length = 635

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/627 (42%), Positives = 369/627 (58%), Gaps = 31/627 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 13  FDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL VI+  +A
Sbjct: 73  GGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANL-VIREAMA 131

Query: 126 -----GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                G N +   +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 132 TDLILGANEQ---VLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + + E Q  D+ +  FSF  +    R Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSRMEPQPPDDEVRWFSFDPEVWIEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT   TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHLTRTTAATHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++R  YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENVQLAMLRTLPGLENCVMLRAAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+AR +   + I F R +SY+G ++DDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGLVAGINAARFALGKELIVFPREESYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLR 475
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I  RR + F    A  I E   L 
Sbjct: 429 LREPYRMLTSRSEYRLVLRSDNADQRLTPLGREIGLIDNRRWQLFQSKQANIIAEKERLH 488

Query: 476 --------SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
                    +  ++V  ++     S+S   D   R +  +L    + + N     PD   
Sbjct: 489 ETRIKERDQVAIAIVKDTEQKIKGSLSLA-DLLRRPSLHYLDLDRYGLGN-----PDINL 542

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
                 E ++IE  Y+ Y  RQ  +  +I     R +  D DY  +  LS E +EKL+ +
Sbjct: 543 AER---EGVEIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKI 599

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIK 614
           KP  + QAS+I G+ PA +N LL+Y++
Sbjct: 600 KPATIGQASRIGGVNPADINALLVYLE 626


>gi|319936585|ref|ZP_08010999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. 29_1]
 gi|319808383|gb|EFW04943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. 29_1]
          Length = 617

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/624 (41%), Positives = 376/624 (60%), Gaps = 22/624 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA    A++G  T LIT     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDVIVVGGGHAGIEACLAPARIGMKTLLITSHFENVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ +DA  +Q ++LN  KGP V+  R QAD++ Y   MQ+ +  QE+LD+I+G V 
Sbjct: 62  GGQMGKTSDATYLQLKMLNTAKGPGVQSLRAQADKKAYPRYMQKVLKKQEHLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  +  +++ +       TV+LTTGT+L+  I +G  K P+G   +  S  L + 
Sbjct: 122 NLIVEEQTVKGVILDNGKEYFGKTVILTTGTYLKAEILVGDQKTPSGPDQERQSLFLSDR 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
             +  F   RLKTGTP R+D +++ + +T+ Q      + FS+ T        Q  C +T
Sbjct: 182 LTELGFRIQRLKTGTPPRVDIESVDFSQTQLQPGTNEPLAFSYETTSYIPIEEQTPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +N+   ++YSG +K  GPRYCPSIEDKIV+F ++  HQIFLEPE    +
Sbjct: 242 YTNEDTHKIIKDNLHKCSMYSGIVKGIGPRYCPSIEDKIVKFSDKPQHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST++P +IQ Q IRTIPGL+   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSMPHDIQEQMIRTIPGLQNCKILKYAYAIEYDAIDPLQLWPSLETKVIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AG+N+A+K    + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAAQGLIAGLNAAKKLRGENPLILKRDEAYIGVMIDDLVTKGTKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RL   G     +     + +   ++  +     L+++  
Sbjct: 422 YRMLTSRAEYRLLLRHDNADERLRKYGYDAHLVKPEVYQIYLDKMERIHNEIERLETIRF 481

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE- 534
           T K+        L ST +S     +  +A   L  P+     +     +    +SL +E 
Sbjct: 482 TPKHEINNILETLGSTRLS-----EGISAKSLLQRPEMDYSKIKPYIGE----TSLTLEE 532

Query: 535 --RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             R+ I   Y  Y  + + +  + K  E++ IP D +Y ++  LS E K+KLS ++P  +
Sbjct: 533 EKRVTILIKYKGYIDKALRQVDKQKKMEEKQIPVDINYDAVLNLSLEAKQKLSQIRPLTI 592

Query: 593 LQASKIEGMTPAALNLLLIYIKKN 616
            QAS+I G+ PA +++LLIY+K++
Sbjct: 593 AQASRISGINPADISVLLIYLKQH 616


>gi|312869221|ref|ZP_07729393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus oris PB013-T2-3]
 gi|311095242|gb|EFQ53514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus oris PB013-T2-3]
          Length = 647

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 363/620 (58%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 20  YDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 79

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + QG V 
Sbjct: 80  GGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRQMKLTIENEPNLTLRQGTVD 139

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +      VVLT GT  RG I IG+L+  +G      +  L  +
Sbjct: 140 QLIVEDGVCKGVVTNTGARYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKSAVKLSEN 199

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIECG 241
             +  FD  R KTGTP R++GK+I +D+TE+Q  D     FSF T   +      Q+ C 
Sbjct: 200 LEELGFDLERFKTGTPPRVNGKSIQFDETEEQPGDAAPHHFSFDTPDSSYIAVTDQLACW 259

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG +
Sbjct: 260 LTYTNEGTHGIIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKSRHQVFLEPEGRD 319

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD  Y +GIST++PEE+Q + + +I GLEK  ++RPGYAIEYD + P +L PTLETK + 
Sbjct: 320 TDEYYLDGISTSMPEEVQQKIVHSIKGLEKAELMRPGYAIEYDVVAPYQLRPTLETKLVQ 379

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG  
Sbjct: 380 NLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKGPFVLGRSDAYIGVMIDDLVTKGTK 439

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R  +              L+++
Sbjct: 440 EPYRLLTSRAEYRLILRHDNADFRLMEKGHAVGLVSDERLAKMEAKKAAVAAEIKRLETI 499

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
                + +      ++ G  R     +A + +  P    Q L    P  A +    VIE+
Sbjct: 500 KFKPSDEAVNDF-IEEHGDNRLKDAISAADLIKRPYVDYQTLTRFIPAPAEELDRHVIEQ 558

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  +   +K  E + IP   DY+ +  L+ E ++KL  ++P  L QA
Sbjct: 559 VEIQLKYAGYIKKEEQKVDRMKRMEAKRIPDSIDYNDIDGLATEGRQKLEKIRPATLAQA 618

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+ PA L +L +YI++
Sbjct: 619 SRISGVNPADLAILSVYIRQ 638


>gi|91215357|ref|ZP_01252328.1| glucose-inhibited division protein A [Psychroflexus torquis ATCC
           700755]
 gi|91186309|gb|EAS72681.1| glucose-inhibited division protein A [Psychroflexus torquis ATCC
           700755]
          Length = 623

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/631 (42%), Positives = 387/631 (61%), Gaps = 28/631 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   +YDVIV+G GHAG EAAA AA +G+ST L+T     I  MSCNPA+GG+ KG ++R
Sbjct: 1   MFKDTYDVIVVGAGHAGSEAAAAAANMGSSTLLVTMNLQNIAQMSCNPAMGGIAKGQILR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR ++    + ++   +NLD  
Sbjct: 61  EIDAIGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMMFSQHWREKLEQTQNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   EK+ +  +       I+  TV+LT GTFL G+IHIG      GR G+  S 
Sbjct: 121 QEMVSGLMVEKHKVVGVRTSLGLEIKAKTVILTNGTFLNGLIHIGNKNFGGGRAGERAST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+ ++ K   +Q  
Sbjct: 181 GMTAELIELGFEAGRMKTGTPPRVDGRSLDFSKMEEQPGDENPWKFSYSSETKPLEKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+ E    S +++G I+S GPRYCPSIEDKI +F ++  HQ+F+EPEG
Sbjct: 241 CWMTYTSPEVHNILKEGFDRSPMFNGAIQSTGPRYCPSIEDKIHKFADKERHQMFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT   Y NG ST+LPE+IQ++ ++ + G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTIEYYVNGFSTSLPEDIQYKALKLVAGFENVKFFRPGYAIEYDYFPPTQLRHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AG+N+A K  + +    SR+++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAASQGLMAGMNAALKVQEKEDFILSRSEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT     +G     R K   +  ++        K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTGKSFGVGLASSERMKVMEEKKKKSETFVEFFK 480

Query: 480 SLVLTSKNL-----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--- 531
           +  +T+  +     S  S    Q GK    Y+ L+ P+        +  D RK  S+   
Sbjct: 481 NQSVTTDEINPILGSKKSSKVDQQGKL---YKILARPNI-------VMEDMRKLESVKKH 530

Query: 532 ---------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    V+E+++++  YA Y  ++ + A ++   E   IP+ F+Y+ L ++S E +E
Sbjct: 531 IEENNLGNEVLEQVEVQVKYAGYIEKEKLNADKLNRLENVRIPEHFNYNGLKSMSLEARE 590

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           KL+ +KP  + QAS++ G+ P+ +++LL+++
Sbjct: 591 KLTKIKPRTISQASRVSGVNPSDVSVLLVHM 621


>gi|289523930|ref|ZP_06440784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502586|gb|EFD23750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 628

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/617 (41%), Positives = 359/617 (58%), Gaps = 9/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+G GHAGCEAA V+A++GA T L+      I  M CNP+IGG  KGH+ REID
Sbjct: 7   RNFDVIVVGAGHAGCEAALVSARMGARTLLLNLYLDNIALMPCNPSIGGPAKGHITREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G   + ADA+ I  R LN  KGPAVR  R Q D   Y   M+  + +  NL V Q  
Sbjct: 67  ALGGEQAKAADASTIHIRWLNTSKGPAVRALRVQCDLSDYHKYMRNTLETTINLYVHQAL 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     EK  +  +            V++TTG +  G + IG    P+G +G   S  L 
Sbjct: 127 VTDLWVEKGRVRGVKTWLGEEYYSPCVIITTGPYTNGRVFIGSHSFPSGPLGQMASLELS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           NS  +  F TGRL+T T  RL   TI +    KQ + +  + FS            C +T
Sbjct: 187 NSLKRIGFITGRLRTDTTPRLHADTINFTSLTKQDSADEPLCFSHWGIPRIYSGYSCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           R+  +TH II  ++  S +  G+I S GPRYCPSIEDK++RF E+  H IFLEP   ++ 
Sbjct: 247 RSTAKTHEIIKSSLTRSPMAKGEINSPGPRYCPSIEDKVMRFPEKESHPIFLEPTCRHSK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST+LP ++Q + +R++PG E+ +I+RPGYAIEYDY  P +L+P LETK + GL
Sbjct: 307 EIYMQNFSTSLPYDVQVEMVRSVPGCERAHILRPGYAIEYDYFPPTQLYPWLETKLVEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+  K  K D I   R ++YIGV+IDDL +KG  EP
Sbjct: 367 FFAGQINGTSGYEEAAAQGLMAGINAVLKLRKEDPIVLGRDEAYIGVLIDDLVTKGTEEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ----KRFAKYIQEYNFLRSLLK 479
           YRM TSR EYR+ +R DNAD RL PIG +LG I + +     K++    +E + L+    
Sbjct: 427 YRMLTSRCEYRLLMRHDNADKRLAPIGRRLGLIDDEKWSLLLKKWKSMDEEIDRLKG--- 483

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +  S  +++   S  Q    +T +AY+ L  P      L+ I P     +  +  R++
Sbjct: 484 TKIYPSYGVNTLLSSLNQPKLEETVSAYDLLKRPGIDYDILYKIAPLEESLNEEIKSRIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y+ Y  RQ   A +++  E+  IP D +Y  +  LS+E +EKL  + P  L QA +
Sbjct: 544 IEVKYSGYIERQTSLASKLQRIEQLRIPLDLNYDEIKGLSSEGREKLKKILPGTLGQAGR 603

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TP+ L +L +Y++
Sbjct: 604 ISGVTPSDLQILWMYLE 620


>gi|22538276|ref|NP_689127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae 2603V/R]
 gi|22535190|gb|AAN01000.1|AE014288_18 glucose-inhibited division protein A [Streptococcus agalactiae
           2603V/R]
          Length = 613

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/606 (43%), Positives = 369/606 (60%), Gaps = 14/606 (2%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDAL G MG+  D   I
Sbjct: 2   EASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDALGGEMGKNIDKTYI 61

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
           Q ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +     E   +  + 
Sbjct: 62  QMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMIDEILVEDGKVVGVR 121

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
              N      +VV+TTGT LRG I +G LK  +G      S +L ++      + GR KT
Sbjct: 122 TATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTLADNLRDLGLEIGRFKT 181

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECGITRTNLETHRIIME 255
           GTP R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C +T TN  +H II +
Sbjct: 182 GTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPCWLTYTNTLSHDIINQ 240

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T+ VY  G+ST+LP
Sbjct: 241 NLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRYTEEVYVQGLSTSLP 300

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           E++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+GLF AGQ NGT+GY
Sbjct: 301 EDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIAGLFTAGQTNGTSGY 360

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+
Sbjct: 361 EEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRL 420

Query: 436 SLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL-LKSLVLTSKNLSS 490
            LR DNAD RLT IG ++G + E R    +KR  ++  E   L S+ LK +  T+K +  
Sbjct: 421 ILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSIKLKPVSETNKRIQ- 479

Query: 491 TSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGR 548
             + FK      TA EF+  P   +++   F  C D     S VIE L+ E  Y  Y  +
Sbjct: 480 -ELGFKPLTDALTAKEFMRRPQITYAVATDFVGCAD-EPLDSKVIELLETEIKYEGYIKK 537

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
            + +  ++K  E++ IP   D+  + +++ E ++K   + P  L QAS+I G+ PA +++
Sbjct: 538 ALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQASRISGVNPADISI 597

Query: 609 LLIYIK 614
           L++Y++
Sbjct: 598 LMVYLE 603


>gi|51894469|ref|YP_077160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Symbiobacterium thermophilum IAM 14863]
 gi|81170583|sp|Q67J34|MNMG_SYMTH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51858158|dbj|BAD42316.1| Glucose inhibited division protein A [Symbiobacterium thermophilum
           IAM 14863]
          Length = 630

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 365/619 (58%), Gaps = 7/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAG EAA  AA+ G  TA  T     IG+M+CNP+IGG  KGHLVRE
Sbjct: 3   LTKEYDVIVVGAGHAGIEAALAAARKGMRTACFTTTLENIGAMNCNPSIGGPAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M   ADA  +Q R+LN  KGPAV+  R Q D+  Y  AM+  +    NLD+ Q
Sbjct: 63  IDALGGQMALTADATFLQMRLLNSGKGPAVQALRAQIDKRAYAWAMRLVLERTPNLDLKQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  IV           VVL+TGT+L G   IG+++  +G  G +P+  
Sbjct: 123 AMVQEIVVEDGRVRGIVTATGIFYGAKAVVLSTGTYLHGRTIIGEVQRSSGPGGLAPAVG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F+ GR KTGTP R+DG+T+ + +  +Q  D     FSFM+      Q+ C 
Sbjct: 183 LTESLKRLGFEVGRFKTGTPPRVDGRTVDFSRMVRQDGDPEPHRFSFMSPLDHREQLPCW 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T   +H +I  N+  + +++G I+  GPRYCPS+EDK+VRF ++  HQ+FLEPE   
Sbjct: 243 LTHTTPASHELIRRNLHRAPMFTGVIEGRGPRYCPSVEDKVVRFADKESHQVFLEPESRE 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  +Y  G+ST+LPEE+Q + +RT+PG+E+  ++RPGYAIEYDYI   +L P+LETK + 
Sbjct: 303 SHEMYVLGLSTSLPEEVQIELVRTVPGMEEAELMRPGYAIEYDYIVSTQLKPSLETKLVR 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF  GQINGT+GYEEAAAQGL+AGIN+A      + +  SR++ YIGV+IDDL +KG  
Sbjct: 363 GLFCGGQINGTSGYEEAAAQGLIAGINAACYVEGREPLVISRSEGYIGVLIDDLVTKGSP 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY-----IQEYNFLRS 476
           EPYRM TSRAE+R+ LR DNA  RLT  G + G + + R + F         +     R+
Sbjct: 423 EPYRMLTSRAEFRMMLRQDNAHLRLTEKGREYGLVDDARWEVFVALRDGIEAERERLART 482

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++       + L     +  + G   T  + L  P+   ++L  +          +   +
Sbjct: 483 VVGPAPEVQRVLERLGSAPLKAGV--TLEQLLRRPEVRYEHLVEMGLGRPDLDEAIWREV 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + +  YA Y  ++  +   ++  E R IP   DY +L  LS E +EKLS ++P  L QAS
Sbjct: 541 ETQVKYAGYIAKEQQQVDRMRRMEARRIPPTLDYQALTGLSMEAREKLSRIRPETLGQAS 600

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA + +L++++ +
Sbjct: 601 RISGVSPADVAVLMVHLDR 619


>gi|305665798|ref|YP_003862085.1| glucose-inhibited division protein A [Maribacter sp. HTCC2170]
 gi|88710564|gb|EAR02796.1| glucose-inhibited division protein A [Maribacter sp. HTCC2170]
          Length = 622

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 385/627 (61%), Gaps = 21/627 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +G+ T L T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFGEEYDVIVVGGGHAGAEAAAAAANMGSKTLLATMNLQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G + D + IQF++LN  KGPA+  PRTQ DR    E +RLA++    +  N
Sbjct: 61  EIDALGGYSGIITDKSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALE----NTPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D  Q  ++G   + N +  +       ++  +VVLT GTFL G+IHIG+ +   GR G+
Sbjct: 117 VDFYQEMISGLLLDGNKVVGVRTSLGIDVKGKSVVLTNGTFLNGLIHIGEKQFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  +        FD+GR+KTGTP R+DG+++ + K   Q  D     FS++   +  +
Sbjct: 177 RAATGITEQLTDLGFDSGRMKTGTPPRVDGRSLDFSKMILQPGDTIPEKFSYLDTPVLTK 236

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q +C +T T+   H ++ E  + S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+E
Sbjct: 237 QRDCHMTHTSKLVHDLLKEGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDSHQLFVE 296

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLE
Sbjct: 297 PEGWDTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLE 356

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK I  L+ AGQINGTTGYEEAA+QGL+AGIN+  K N+ +     R ++YIGV+IDDL 
Sbjct: 357 TKLIDNLYFAGQINGTTGYEEAASQGLMAGINAHLKLNEKEPFILKRDEAYIGVLIDDLI 416

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYRMFTSRAEYR  LR DNAD RLTP   ++G   + R KR  +  ++ +    
Sbjct: 417 TKGTEEPYRMFTSRAEYRTLLRQDNADLRLTPKSHEIGLATDDRLKRMDEKKRKSDAFVQ 476

Query: 477 LLKSLVLTSKNL-----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS- 530
             KS  +  + +     S  S   KQ  K    ++  S P  ++ ++  +   +   S  
Sbjct: 477 FFKSTSVGPEAINPILESVDSSLVKQSDK---MFKVFSRPKVTMNHMLQLDSVSEFVSDN 533

Query: 531 ----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                V+E+ +I+  Y+ Y  ++   A ++   E   IP +FDYS L +LS E +EKL  
Sbjct: 534 DLDREVMEQAEIQVKYSGYIQKEKNNADKLHRLENVKIPDNFDYSKLKSLSYEAREKLET 593

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++P  + QAS+I G++P+ +++LL+++
Sbjct: 594 IRPVTISQASRISGVSPSDISVLLVFM 620


>gi|42519902|ref|NP_965832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus johnsonii NCC 533]
 gi|81170550|sp|Q74H95|MNMG_LACJO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|41584192|gb|AAS09798.1| glucose inhibited division protein A [Lactobacillus johnsonii NCC
           533]
 gi|329668159|gb|AEB94107.1| glucose inhibited division protein A [Lactobacillus johnsonii DPC
           6026]
          Length = 632

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/618 (41%), Positives = 361/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  +A++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGVEAALASARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 69  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQAVAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKLPEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 189 LEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG +T 
Sbjct: 249 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRHTK 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-FLRSLLKSLV 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +  + ++ K  +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKKVTI 488

Query: 483 LTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +  +       V E+++I  
Sbjct: 489 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVERLSGETLATDRYVKEQVEIAL 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 549 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 608

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 609 VNPADLAILTAYIQQGRI 626


>gi|323343709|ref|ZP_08083936.1| glucose inhibited division protein A [Prevotella oralis ATCC 33269]
 gi|323095528|gb|EFZ38102.1| glucose inhibited division protein A [Prevotella oralis ATCC 33269]
          Length = 625

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/622 (40%), Positives = 366/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A +GA T L+T   + I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 7   YDVIVVGGGHAGCEAATASANMGADTCLVTMDMNKIAQMSCNPAVGGIAKGQIVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPAV  PR Q DRE +    ++ + +  NL + Q +  
Sbjct: 67  GGQMGHVTDETAIQFRMLNKGKGPAVWSPRAQCDREKFIWKWRQILDNTPNLSIWQDQAN 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N    I       +R  ++++T GTFL G++HIG+ ++  GR  +    +   S
Sbjct: 127 ELIVKNNEAVGIKTIWGVELRAKSIIITAGTFLNGLMHIGRHQVTGGRCAEPAVPNFTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             ++     R+KTGTP R+D +++ +++ E Q  +     FS+M +    RQ+ C    T
Sbjct: 187 ITRWGIRAERMKTGTPVRIDKRSVHFEEMEIQPGENDFHQFSYMGNYRVLRQLPCWTCYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             E H I+ + +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ +
Sbjct: 247 TKECHDILHQGLADSPLFNGQIQSIGPRYCPSIETKLVTFPDKDQHPLFLEPEGEDTNEM 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P ++Q + I  IP L    I RPGYAIEYDY +P +L  +LE+K I+GLF 
Sbjct: 307 YLNGFSSSMPMDVQLKAIHQIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIIAGLFF 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QGLVAG+N+A      +     R +SYIGV+IDDLT+KGV EPYR
Sbjct: 367 AGQVNGTTGYEEAGGQGLVAGVNAALHCTNAEPFVMKRDESYIGVLIDDLTTKGVDEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT     LG     ++ R+  +I++ N ++ +L     TS
Sbjct: 427 MFTSRAEYRILLRQDDADARLTEKSYTLGLA---KKDRYDWWIEKKNAIKHILNYCNNTS 483

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
                 + +    G T         + +  P   ++ L +  P+ ++           +I
Sbjct: 484 VKAKDINSALGAIGTTPLRMGCKISDLIGRPQVGLKYLANFIPELKEIINTPTNRKEEII 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I   Y  Y  R+ + A++++  E   I   F Y  L  LS E ++KL  + P  L 
Sbjct: 544 EASEINIKYKGYIERERMIAEKMRRLEDIKIKDRFKYKELHELSTEARQKLERINPETLA 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LLI + +
Sbjct: 604 QASRIPGISPSDINVLLILLGR 625


>gi|325281348|ref|YP_004253890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Odoribacter splanchnicus DSM 20712]
 gi|324313157|gb|ADY33710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Odoribacter splanchnicus DSM 20712]
          Length = 627

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/620 (42%), Positives = 366/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA LG+ T LIT   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 8   YDVIVVGAGHAGCEAACAAAHLGSHTLLITLDMNKIAQMSCNPAIGGIAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL G V D + IQFR+LN  KGPA+  PR+Q DR  +    + ++   + LD+ Q +V 
Sbjct: 68  GGLTGIVTDQSSIQFRMLNRSKGPAMWSPRSQCDRMKFSANWRYQLEHTDGLDMWQDDVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  +      +     V+LT GTFL G++HIG++    GR+ +  S+ L   
Sbjct: 128 ELVVKDGQVYGVKTALGVVFNAKRVILTNGTFLNGLMHIGRVSFEGGRISEPASHGLTAQ 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE--CGIT 243
                F+TGR+KTGTP R+DGK+I + K  +Q  D     FS++     N  I+  C + 
Sbjct: 188 LCSLGFETGRMKTGTPVRIDGKSIDFSKLTEQGGDNDFHCFSYLHYDYRNTLIQRPCYMA 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H  + +    S +++G I+S GPRYCPSIE K+  F +R  H +FLEPEG  T 
Sbjct: 248 YTNEAVHHALRQGFTDSPLFNGTIQSVGPRYCPSIETKLNTFADRTSHHLFLEPEGETTT 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP ++Q   +R I G E V I RPGYAIEYDY  P +L+ TLETK I GL
Sbjct: 308 EFYLNGFSSSLPWDVQLTGLRLIEGFENVRIFRPGYAIEYDYFPPTQLYHTLETKLIQGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AGIN+    +       +R ++YIGV+IDDL +KGV EP
Sbjct: 368 YFAGQINGTTGYEEAAAQGLMAGINAHLSLHSSVEFVLNRDEAYIGVLIDDLVTKGVDEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYRI LR D+AD RLTP G ++G +   R K +   I++ + L   +K+  +
Sbjct: 428 YRMFTSRAEYRILLRQDDADMRLTPKGFQIGLVTNNRHKIYLDKIEKRDLLIDFIKNFSV 487

Query: 484 TSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
               ++S  +S       +     + LS P   +  L  + P    F         +IE 
Sbjct: 488 KPDEINSFLLSLNTAPIRQGMKLVDILSRPQVGLLALIDVLPSLNNFIGEFVLRDEIIEA 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y+ Y  R+ + A ++   E  +I   F+Y  L  LS E ++KLS ++P  + QA
Sbjct: 548 AEISIKYSGYIERERMLADKLSRLENLVIAGKFNYEELTNLSIEARQKLSKIQPRTIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +N+LLI + +
Sbjct: 608 SRISGVSPADINVLLILMGR 627


>gi|259500782|ref|ZP_05743684.1| glucose-inhibited division protein A [Lactobacillus iners DSM
           13335]
 gi|302190767|ref|ZP_07267021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners AB-1]
 gi|259167476|gb|EEW51971.1| glucose-inhibited division protein A [Lactobacillus iners DSM
           13335]
          Length = 630

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/619 (42%), Positives = 364/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK IS L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNISHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKKLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|259502138|ref|ZP_05745040.1| glucose-inhibited division protein A [Lactobacillus antri DSM
           16041]
 gi|259169951|gb|EEW54446.1| glucose-inhibited division protein A [Lactobacillus antri DSM
           16041]
          Length = 647

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/620 (42%), Positives = 361/620 (58%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 20  YDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 79

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   +Q R+LN  KGPA+R  R QAD+  Y   M+  I ++ NL + QG V 
Sbjct: 80  GGEMGHNIDKTYVQMRMLNTGKGPAIRALRAQADKHAYHRQMKLTIENEPNLTLRQGTVD 139

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +      VVLT GT  RG I IG+L+  +G      +  L  +
Sbjct: 140 QLIVEDGVCQGVITNTGARYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKSAVKLSEN 199

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIECG 241
             +  FD  R KTGTP R++G TI + +TEKQ  DE    FSF T   +      Q+ C 
Sbjct: 200 LEELGFDLERFKTGTPPRVNGNTIKFAETEKQPGDEDPHHFSFDTPDSSYIAVTDQLACW 259

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG +
Sbjct: 260 LTYTNEGTHGIIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKSRHQVFLEPEGRD 319

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD  Y +GIST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L PTLETK + 
Sbjct: 320 TDEYYLDGISTSMPEEVQQKIVHSIKGLEAAELMRPGYAIEYDVVAPYQLHPTLETKLVK 379

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGLVAGIN+  ++         R+D+YIGVMIDDL +KG  
Sbjct: 380 NLYTAGQTNGTSGYEEAAGQGLVAGINAGLRAQGKGPFVLGRSDAYIGVMIDDLVTKGTK 439

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RL   G  +G +   R  +              L+S+
Sbjct: 440 EPYRLLTSRAEYRLILRHDNADFRLMEKGHAVGLVSAERLAKMEAKKAAVAAEIKRLQSI 499

Query: 482 VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
                + +      ++ G  R     +A + +  P    Q L    P  A +    VIE+
Sbjct: 500 KFKPSDEAVNDF-IEEHGDNRLKDAISAADLIKRPYVDYQTLTRFIPAPATELDRHVIEQ 558

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  +   +K  E + IP + DY+ +  L+ E ++KL  ++P  L QA
Sbjct: 559 VEIQLKYAGYIKKEEQKVDRMKRMEAKRIPDNIDYNDIDGLATEGRQKLEKIRPETLAQA 618

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+ PA L +L +YI++
Sbjct: 619 SRISGVNPADLAILSVYIRQ 638


>gi|323141444|ref|ZP_08076334.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414100|gb|EFY04929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 641

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/627 (42%), Positives = 380/627 (60%), Gaps = 26/627 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  ++DVIV+G GHAG EAA  AA+LG  T L T     +  M CNP+IGG  KGHLVRE
Sbjct: 18  ITDTFDVIVVGAGHAGVEAALAAARLGGKTLLATLSLDNVALMPCNPSIGGPAKGHLVRE 77

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG  AD A IQ R+LN  KG AV   R Q D+  Y   M++ +  QENL++ Q
Sbjct: 78  LDALGGQMGISADLACIQMRLLNTGKGYAVHALRGQEDKPFYHTLMKKIVEDQENLELKQ 137

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +  +   +     V+L TGT+LRG I  G++    G  G   +  
Sbjct: 138 LMIDKLLVENGAVVGVEAETGEVFEAKCVILATGTYLRGRIVYGQVNYECGPNGLRSAQK 197

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S ++   +  R KTGTPAR+D +++ + K E Q+ DE +  FSF++D  T  Q+ C 
Sbjct: 198 LSASLLENGVELMRFKTGTPARIDARSLDYSKMEPQYGDEEVRNFSFISDIKTREQVPCY 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  S +Y+G I+  GPRYCPSIE KIVRF  +  HQ+F+EPEG +
Sbjct: 258 LTYTNEATHKIIRDNLHLSGMYNGMIEGVGPRYCPSIESKIVRFANKERHQLFIEPEGRS 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LP  IQ QF++TIPGLE   ++R GYAI+YD ++P +L P+LE K IS
Sbjct: 318 TNEMYVQGMSSSLPAHIQLQFMQTIPGLEHCKMMRAGYAIDYDCLDPLQLRPSLEHKAIS 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAAAQGL+AGIN+  K N  + +   R ++YIGV+IDDL +KG  
Sbjct: 378 GLFSAGQSNGTSGYEEAAAQGLMAGINAMMKINGREPLVLRRDEAYIGVLIDDLVTKGTS 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT  G  +G + ++R   F +        R+ L+  
Sbjct: 438 EPYRMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVDDKRYGIFTEK-------RTALERT 490

Query: 482 V--LTSKNLSSTSISFKQDGKTRTA--------YEFLSYPDFS---IQNLFSICPDARKF 528
           V  L  +N+S ++ +  +     TA         + L   + +   +Q  F +     + 
Sbjct: 491 VSELGKQNISPSAENNAKLDAMGTAPLRSGSSLLDLLRRKEVTYSKLQQAFGLS----EL 546

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKE-IKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +  V E+ +I + Y  Y  +Q  E +  +K E KRL P D DY ++  LS+E  EKL  +
Sbjct: 547 APQVAEQAEIFAKYEGYITKQRQEVERFMKLENKRL-PDDIDYRAIKELSSEAAEKLDKV 605

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIK 614
           +P N+ QAS+I G++PA +++L+I ++
Sbjct: 606 RPANIGQASRISGVSPADISVLMIALE 632


>gi|315654125|ref|ZP_07907041.1| glucose inhibited division protein A [Lactobacillus iners ATCC
           55195]
 gi|315488821|gb|EFU78467.1| glucose inhibited division protein A [Lactobacillus iners ATCC
           55195]
          Length = 630

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/629 (42%), Positives = 365/629 (58%), Gaps = 27/629 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK IS L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNISHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +          ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHNLGLISEERYQEFLHKKE----------AIAM 478

Query: 484 TSKNLSSTSI-----------SFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           T KN+ + +I             KQD   G    A +FL  P  +  ++  +        
Sbjct: 479 TMKNIKAITIHPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDSIEKLTGKKLAAD 537

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E+++I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P
Sbjct: 538 RYVKEQVEIALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            ++ QA +I G+ PA L +L  YI++  +
Sbjct: 598 ESIAQAERISGVNPADLAVLTAYIQQGRI 626


>gi|126662719|ref|ZP_01733718.1| glucose-inhibited division protein A [Flavobacteria bacterium
           BAL38]
 gi|126626098|gb|EAZ96787.1| glucose-inhibited division protein A [Flavobacteria bacterium
           BAL38]
          Length = 623

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 273/635 (42%), Positives = 383/635 (60%), Gaps = 32/635 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLNQYDVIVVGAGHAGCEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  + +  NLD  
Sbjct: 61  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFSDEWRTMLENTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG  ++   I  +       I+ ++VVLT GTFL G+IHIG  +   GR G+S S 
Sbjct: 121 QEMVAGLLSDNGKIVGVKTSLGVEIKSTSVVLTNGTFLNGLIHIGDKQFGGGRAGESASF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            +    +K  F++GR+KTGTP R+DG+++ + K  +Q  DE  +P  F    +T     Q
Sbjct: 181 GITEDLVKLGFESGRMKTGTPPRVDGRSLDFSKMSEQPGDE--VPEKFSYSNLTAPLKTQ 238

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C ++ T+LE H I+ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EP
Sbjct: 239 RSCWMSYTSLEVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKERHQLFVEP 298

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG  T   Y NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLET
Sbjct: 299 EGWTTCEYYINGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLQHTLET 358

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GL+ AGQINGTTGYEEAA+QGL+AGIN+A K    +     R ++YIGV+IDDL +
Sbjct: 359 KLVEGLYFAGQINGTTGYEEAASQGLMAGINAALKVQNREPFILKRDEAYIGVLIDDLIT 418

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNF 473
           KG  EPYRMFTSRAEYR  LR DNAD RLTP   ++G   E R    +++F++     NF
Sbjct: 419 KGTEEPYRMFTSRAEYRTLLRQDNADFRLTPKAFEIGLAKEERLIRMEQKFSQSDAMVNF 478

Query: 474 LR-SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL- 531
            R + LK         +  S    Q  K    ++  S P   ++       D RKF  + 
Sbjct: 479 FRETSLKPEEANPILEAKGSAPMSQPDKM---FKVFSRPQLDLE-------DFRKFKKVA 528

Query: 532 -----------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                      V+E+ +I+  Y+ Y  ++   A ++   E  +IP +F++  + ++S E 
Sbjct: 529 AYIEEHDLDQEVVEQAEIQVKYSGYIEKEKNNADKLTRLEDMVIPDNFNFDKIQSISIEA 588

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           K+KL+ ++P  + QAS+I G++P+ +++LLIY+ +
Sbjct: 589 KQKLNKIRPRTIAQASRISGVSPSDISVLLIYMGR 623


>gi|213963856|ref|ZP_03392104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sputigena Capno]
 gi|213953536|gb|EEB64870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sputigena Capno]
          Length = 623

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/630 (43%), Positives = 381/630 (60%), Gaps = 22/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGAQTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR+G+  + 
Sbjct: 121 QGMVNDLLIEKDRVVGVRTSLGVTIKAKSVVLTNGTFLNGVMHIGLKQFGGGRVGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF ++ K    Q +
Sbjct: 181 GLTECLVQHGFEAGRMKTGTPPRVDARSLDFTKMVPQPGDEHPQKFSFSSETKPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF ++  HQIF+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKERHQIFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV  +RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFLRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AGIN+  K  + +     R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGINAVLKVREREPFILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD+RLTP+G ++G + E R + +    ++ N   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADSRLTPLGYEIGTVSEERYRAWETKNRKVNEFITYIK 480

Query: 480 SLVLTSKNLSS-----TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            L +T   ++       S   KQ  K +   + LS PD ++ +  SI     + +S + E
Sbjct: 481 ELSVTPDEVNPILEKYDSSPMKQGDKLQ---KVLSRPDVTLADFESI----DRIASYIKE 533

Query: 535 R---------LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                      ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL 
Sbjct: 534 NDLNEEEKTCAEVEVKYAGYIEKERNNADKLNRLESVRIPDNFDYDKIISLSFEGREKLK 593

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P  L QAS+I G++PA +++LLIY+ +
Sbjct: 594 KIRPTTLSQASRISGVSPADISILLIYMGR 623


>gi|333029486|ref|ZP_08457547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides coprosuis DSM 18011]
 gi|332740083|gb|EGJ70565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides coprosuis DSM 18011]
          Length = 624

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 366/623 (58%), Gaps = 16/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA  AA+LG+ T LIT   + I  MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAATAAARLGSKTCLITMDMNKIAQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D   IQFR+LN  KGPA+  PR Q DR  Y    +  + S +NLD+ Q  V 
Sbjct: 65  GGEMGLITDRTAIQFRMLNRSKGPAMWSPRAQCDRNKYIWEWREVLDSTDNLDIWQDSVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  +     +     ++++T GTFL G++H+GK ++P GRM +  S  L  S
Sbjct: 125 DLIIKDGQVIGVNTLWEATFYAKSIIITAGTFLNGLMHVGKTQLPGGRMAEPASYYLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
              +     R+KTGTP R+D +++ ++  E Q  D+    FSFM T K     + C    
Sbjct: 185 INSYGIRFDRMKTGTPVRIDSRSVHFEDMEPQEGDDDFHKFSFMDTGKRHLDALPCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  E+H  + + +  S +Y+G IKS GPRYCPS+E KIV F  +  HQ+FLEPEG+ T+ 
Sbjct: 245 TTPESHETLRKGLVDSPLYNGQIKSIGPRYCPSVETKIVNFPTKEKHQLFLEPEGVITNE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ + +R IP    V++ RPGYAIEYD+ +P +L  TLE+K I  LF
Sbjct: 305 MYLNGFSSSLPMDIQLKALRQIPAFRDVHVYRPGYAIEYDFFDPTQLTHTLESKVIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QGL+AGIN+    +        R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAAGQGLIAGINAHINCHGGKEFILGRDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLTP    LG     R   ++   ++ + +     +  + 
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTPKAWDLGLASRERYNLYSSKKEQIDRILEFANNYSVK 484

Query: 485 SKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-------FSSLV 532
              ++       + S K   K     E L+ P  + +N+    P  ++           +
Sbjct: 485 PAYINEALEKLGTTSLKHGCKL---IEVLTRPQITFENIQDSIPAFKEELDKIKGRREEI 541

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  +I   Y+ Y  R+ + A++ K  E   I   FDYS + +LS E +EKL  + P N+
Sbjct: 542 IEAAEILVKYSGYIEREKLIAEKTKRLENIKIRGKFDYSQIHSLSFEAREKLQKIDPENI 601

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ ++K
Sbjct: 602 AQASRIPGVSPSDINVLLVLVRK 624


>gi|300121848|emb|CBK22422.2| Glucose-inhibited division protein A [Blastocystis hominis]
          Length = 684

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 285/656 (43%), Positives = 383/656 (58%), Gaps = 46/656 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EAAA AA++G  TAL+T   STIG MSCNP++GG+GKGHL+REIDAL
Sbjct: 35  YDVVVIGGGHAGVEAAAAAARMGVKTALVTTNFSTIGEMSCNPSMGGIGKGHLIREIDAL 94

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG--- 122
           DGL+GR+ D  GIQFRVLN  +GPAV GPR Q DR+LY+  MQ+ I +  NL VI+    
Sbjct: 95  DGLIGRMTDYGGIQFRVLNASRGPAVHGPRAQVDRDLYKKHMQQAIRNYPNLTVIEDGAH 154

Query: 123 -----------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                      +    +     I  +V +    I CS VVL TGTFL GV HIGK  +PA
Sbjct: 155 VPLPFSASSHPQEFEMDASNKTIHGVVTRKGQHIHCSAVVLCTGTFLHGVCHIGKWNVPA 214

Query: 172 GRMG------DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
           GR        D PS  L +          R  TGTP RL   +I W +   Q +D   +P
Sbjct: 215 GRFHRDTLNVDPPSIHLADFLHSLHLPIERFTTGTPPRLHRDSIDWSRLATQASDAPAVP 274

Query: 226 FSFMT----DKITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDI-KSYGPRYCPSI 278
            SF+     D I N  R + C  T TN ETH I   +      ++G+  K  GPRYCPSI
Sbjct: 275 LSFLNIYAGDFIPNQSRLLRCATTYTNEETHAICNAHRGELPSFTGNRGKGQGPRYCPSI 334

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           E K++RF E+  H I+LEPEGL T VVYPNG++TA   E Q + +RT+ GLE V+++RPG
Sbjct: 335 EKKVLRFPEKKRHLIWLEPEGLETPVVYPNGLATAYDAETQLKLLRTMRGLEHVDMLRPG 394

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YA+EYDY++P  L P    + ++ LFLAGQINGTTGYEEAAAQG++AGIN+AR+      
Sbjct: 395 YAVEYDYVDPAVLTPAFRLRLLANLFLAGQINGTTGYEEAAAQGIMAGINAARQVMGKPA 454

Query: 399 ICFSRTDSYIGVMIDDLTSKG-----VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
           +   R+ + IGV+ DDLT  G       EP+RMFTSR+EYRI++R DNAD RLT  G + 
Sbjct: 455 VILERSRAMIGVLTDDLTRGGYRTDLTREPFRMFTSRSEYRITVRADNADLRLTEWGYQE 514

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
           G +GE R  +F +  +E       LK+       LSS       + K  +A++ ++YP  
Sbjct: 515 GIVGEERYAKFMEKKEELLKCNEFLKAY-----RLSSEEWGLPGEHKYISAFDAMAYPKI 569

Query: 514 SIQNLFSICPDARKFSSL------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           SI+ +  I  + +  + L      V + L I + Y  Y  +Q  +           IP++
Sbjct: 570 SIKTVEDIIRNKQGDTVLNHTTRGVKQTLYITAKYGVYLEKQKKDIDLFNRSNGLKIPEN 629

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK--NTVKLN 621
           FD+S+LP +S E K+KL   KP ++ +   I G+ P+    ++  I+K  N V+ N
Sbjct: 630 FDFSALP-ISQEEKDKLMDTKPSSIEEVKHILGIKPSTFLFIIKAIRKSGNEVEQN 684


>gi|120437623|ref|YP_863309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gramella forsetii KT0803]
 gi|205831516|sp|A0M6J7|MNMG_GRAFK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117579773|emb|CAL68242.1| glucose inhibited division protein A [Gramella forsetii KT0803]
          Length = 623

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/626 (42%), Positives = 385/626 (61%), Gaps = 18/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+G GHAG EAAA AA +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFEKQYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    + ++    NLD  
Sbjct: 61  EIDAMGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLKLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   E + +  +       +   +VV T GTFL G+IHIG  +   GR G+  + 
Sbjct: 121 QEMVAGLIIENDKVIGVRTSLGLEVFAKSVVCTNGTFLNGLIHIGDKQFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+DG+++ + K  +Q  D+    FS+  + K  ++Q  
Sbjct: 181 GITKDLIEVGFEAGRMKTGTPPRVDGRSLDYSKMTEQPGDDIPGKFSYSDETKPLSKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSNEVHDILKEGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA QG++AGIN+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAACQGMMAGINAALKVQEKDEFILKRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA----KYIQEYNFLR 475
             EPYRMFTSRAEYR  LR DNAD RLT     LG   E+R ++      K ++   +L+
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTERSYNLGLASEKRMRKMEEKKDKSLKFVQYLK 480

Query: 476 SLLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPD---ARK 527
            L  S+V    N       S   KQ  K    ++  S P  +++++  FS   +     +
Sbjct: 481 DL--SVVPEEANPVLEKRNSSPMKQSDK---VFKVFSRPQITMEDVKNFSGVEEFISENE 535

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +  +IE+ +I+  Y+ Y  ++   A ++   E   IPK+FDYS++ ++S E +EKL  +
Sbjct: 536 LNEEMIEQTEIQVKYSGYIEKEKNNADKLNRLEDMKIPKNFDYSNIKSMSYEAREKLKKV 595

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P  + QAS+I G++P  +++LL+Y+
Sbjct: 596 QPATVSQASRISGVSPNDISVLLVYM 621


>gi|102139963|gb|ABF70103.1| glucose-inhibited division A family protein [Musa balbisiana]
          Length = 730

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/621 (43%), Positives = 381/621 (61%), Gaps = 12/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  AA+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 76  IEEQYDVIVVGGGHAGCEAALAAARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 135

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y L M++ + S  NL + +
Sbjct: 136 VDALGGEIGKIADRCYLQKRVLNRSKGPAVRALRAQTDKREYALEMKKVVESTTNLFIRE 195

Query: 122 GEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      KN     V     M     +VVLTTGTF+ G I +G+  + AGR G+S S+
Sbjct: 196 AMVTNILVGKNDTVEGVSTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMAAGRAGESASH 255

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S  +  F+T RLKTGTPAR+D +++ +   E Q  DE +  FSF  D  +   Q+ 
Sbjct: 256 GLTESLQQLGFETDRLKTGTPARVDYRSVNFSGLEPQHGDEEVNWFSFDPDYHVEREQMC 315

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 316 CYLTRTTKDTHQLIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKDSHQIFLEPEG 375

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 376 RTVPELYVQGFSTGLPERLQLTLLRTLPGLENCLMLRPAYAVEYDYLPAHQCSRSLMTKK 435

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF +GQINGTTGYEEAAAQGLV+GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 436 IEGLFFSGQINGTTGYEEAAAQGLVSGINAARHSDGKSIIILERESSYIGTLIDDLVTKD 495

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLR 475
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I ERR    Q +  + ++E    +
Sbjct: 496 LREPYRMLTSRSEHRLLLRADNADSRLTPLGWDIGLIDERRWNLYQLKQTRILEE----K 551

Query: 476 SLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             LKS+ ++  + ++  + +S +    + +    L  P    + L          S +  
Sbjct: 552 ERLKSVRISGGDFAAEVSHLSGQPVKDSSSLESILKKPHVEYKVLDKHGYGNELLSRIEK 611

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++I+  YA +  RQ  + ++I  ++ + +P+D DY S+  LS E +EKLS ++P  + 
Sbjct: 612 ECVEIDIKYAGFIARQRSQLQQIVNQQHKRLPEDLDYYSMTTLSLEAREKLSKVRPQTIG 671

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS++ G++PA +  LLI ++
Sbjct: 672 QASRVGGVSPADMTALLICLE 692


>gi|148269797|ref|YP_001244257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga petrophila RKU-1]
 gi|281412319|ref|YP_003346398.1| glucose inhibited division protein A [Thermotoga naphthophila
           RKU-10]
 gi|205831566|sp|A5IKF8|MNMG_THEP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147735341|gb|ABQ46681.1| glucose inhibited division protein A [Thermotoga petrophila RKU-1]
 gi|281373422|gb|ADA66984.1| glucose inhibited division protein A [Thermotoga naphthophila
           RKU-10]
          Length = 626

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/621 (42%), Positives = 377/621 (60%), Gaps = 11/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++     T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLAVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+ LY   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINIRMLNVSKGPAVRALRAQIDKILYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V    TEK  +  +V  DN  I      V++TTGTFLRG I IG+   PAGRMG+ P+ 
Sbjct: 126 IVEKILTEKGKVKGVV--DNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPAT 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   
Sbjct: 184 KLTESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           C +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EP
Sbjct: 244 CWLTRTNPETHSIIRQYLEFSPLYGTVKLIEGVGPRYCPSIEDKVVKFKDKESHQVFVEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+  Y NG+ST+LP E Q + IR++ GLE   I RP YAIEYDYI+P++L+PTLE+
Sbjct: 304 EGRDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIITRPAYAIEYDYIDPRQLYPTLES 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 364 KLVENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGESPLILKRSEAYIGVLIDDLVT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-FLRS 476
           +GV EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N  +  
Sbjct: 424 RGVDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIER 483

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L K  V  S  ++   TS+      ++ + Y  L  P  S   L  + P+       V+E
Sbjct: 484 LKKVAVKPSDRINDLLTSLGTSPLKESVSLYHLLKRPQLSYSTLKFLDPNPMD-DPEVVE 542

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y  +   E    +  E   +P D DY ++P LS E K+KL  ++P ++ Q
Sbjct: 543 QVEINVKYEGYIQKMFEEVAVFEKYENYEVPYDLDYDAVPNLSTEAKDKLKKIRPRSIGQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A +I G+ P+ ++ L+IY+ K
Sbjct: 603 AMRIPGINPSDISNLIIYLDK 623


>gi|223983477|ref|ZP_03633663.1| hypothetical protein HOLDEFILI_00943 [Holdemania filiformis DSM
           12042]
 gi|223964649|gb|EEF68975.1| hypothetical protein HOLDEFILI_00943 [Holdemania filiformis DSM
           12042]
          Length = 620

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 363/620 (58%), Gaps = 11/620 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGGHAG EAA + A+LG  TALI+     IG M CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVVGGGHAGIEAALITARLGCETALISLSLENIGKMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG  AD   +QF++LN  KGP V+  R Q+D+  Y   MQ EI  QE L +I G   G
Sbjct: 63  GQMGITADQTALQFKMLNTTKGPGVQSLRVQSDKLAYARRMQEEIQRQERLRLILGICTG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   I+ I M+D  ++    V+LTTGT++   + I     P+G  G+  +N L  S 
Sbjct: 123 ILVENGKITGITMEDGQILEARAVILTTGTYMSSSVMISSEVTPSGPDGEPTTNKLSESL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE--CGITR 244
            +    T RLKTGTP R+  ++I + KT  Q   ++ + FS  T  I   + +  C +T 
Sbjct: 183 RQAGLKTFRLKTGTPPRVLTESIDFSKTTPQPGTDQFVAFSTTTQTIRKPEDQKLCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH +I+ N+K S++YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE    D 
Sbjct: 243 TTPQTHELILANLKKSSMYSGVVKGVGPRYCPSIEDKLVRFSDKPRHQIFLEPESEALDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST+LP ++Q   + ++PGLE   I +  YAIEYD I+P +L P+LET  +  LF
Sbjct: 303 TYVQGFSTSLPRDLQELMVHSLPGLEHAVIRKYAYAIEYDAIDPLQLKPSLETLVVENLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+  K      +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLMAGINAVLKLRNQPPLVLRRDEAYIGVMIDDLVTKGTQEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL   G +LG I E R + +     +   L+  LK+  LT
Sbjct: 423 RLLTSRAEFRLLLRHDNADQRLMRYGYELGSISEPRWQDYQHRRAQVEQLKEQLKTCRLT 482

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K+     L     +   DG   +A E +  P  ++  L         F      + +IE
Sbjct: 483 PKSPIQDALEEVGYAALTDGV--SAEELVRRPHITVAMLKPAL--DFDFDPAAAAQAEIE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   EA+++   +  ++P+D DY  +  LS E ++KL  ++P  L QAS+I 
Sbjct: 539 LKYEGYINKARKEAEKMMAMDHVVLPEDLDYDQVQHLSLEGRQKLKAIQPHTLGQASRIS 598

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G++PA + +L + +++   K
Sbjct: 599 GVSPADVAMLAMVLEQRHRK 618


>gi|260591942|ref|ZP_05857400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella veroralis F0319]
 gi|260536226|gb|EEX18843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella veroralis F0319]
          Length = 623

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/623 (41%), Positives = 367/623 (58%), Gaps = 17/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T LIT   + IG MSCNPAIGG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANMGAMTCLITMDMNKIGQMSCNPAIGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    +  +   +NLD+ Q +  
Sbjct: 65  GGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRTRLDHTDNLDIFQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +  I       +   TV++T GTFL G++HIGK K+  GR  +   ++   S
Sbjct: 125 ELLVDNNKVLGIKTIWGIDLYARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHNFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ +++ E Q  +     FS+        Q+ C    T
Sbjct: 185 ITRHGIRSARMKTGTPVRIDRRSVHFEEMEPQPGESDYHQFSYHGQYRHLPQLPCWTCNT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ +
Sbjct: 245 NEEVHDVLRSGLAESPLFNGQIQSTGPRYCPSIETKLVTFPDKDSHPLFLEPEGTDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P +IQ   I  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPWDIQLSAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIIDGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG+VAGIN+A      D     R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIVAGINAALLCTGKDPFIMKRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT     +G     ++ R+  +IQ+   +  +L     TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERAYNIGIA---KRDRYDWWIQKKENIDRILNYCNTTS 481

Query: 486 KNLSSTSISFKQ------DGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
              +  +    Q       G T+   + ++ P  + +NL ++ P+ ++           +
Sbjct: 482 VKPTEVNDFLVQLGTSPIKGSTKIT-DLVARPQVNFENLSAVMPNLKEVIETTPNRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++   E   I   F YS L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGHFKYSELHDLSTECRQKLEHIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|309804043|ref|ZP_07698124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163811|gb|EFO66077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 11V1-d]
          Length = 630

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/619 (42%), Positives = 363/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK IS L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNISHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAIATTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKNLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|185178729|ref|ZP_02964544.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024346|ref|ZP_02997018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518461|ref|ZP_03003948.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524182|ref|ZP_03004246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273495|ref|ZP_03206031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554149|ref|YP_002284456.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225551143|ref|ZP_03772089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|226700965|sp|B5ZAL6|MNMG_UREU1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|184209330|gb|EDU06373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018610|gb|EDU56650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998104|gb|EDU67201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659997|gb|EDX53377.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198250015|gb|EDY74795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541650|gb|ACI59879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378958|gb|EEH01323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 614

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 369/614 (60%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           +  +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  ++Q+ C 
Sbjct: 182 DVLVKLGFELIRLKTGTPARIKKDSIDFTNMVLEPGTNQKIAFSHYHPVYKPYDKQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLEDCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN ++K    + I   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVSQKHKNKEPIVLGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++ N + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQINEVLNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEVKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|225550750|ref|ZP_03771699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225379904|gb|EEH02266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 614

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/614 (40%), Positives = 369/614 (60%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+VADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKVADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  ++Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFINMVLEPGTNQKIAFSHYHPVYKPYDKQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG K+G +   + + + +Y+     ++ +L  L
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFKIGLL---KPEVYDQYLNNLKQIKEILNWL 478

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T+       + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 479 KTTTVG-QIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|170590250|ref|XP_001899885.1| Hypothetical 71.7 kDa protein F52H3.2 in chromosome II, putative
           [Brugia malayi]
 gi|158592517|gb|EDP31115.1| Hypothetical 71.7 kDa protein F52H3.2 in chromosome II, putative
           [Brugia malayi]
          Length = 638

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/623 (45%), Positives = 383/623 (61%), Gaps = 18/623 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAAA AA+  A T L+T++  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 18  YDVIVIGGGHAGCEAAAAAARCCAHTLLLTNRKDTIGEMSCNPSFGGVGKGHLIREVDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVIQGEV 124
           DGL GR+ D + I +  LN   GPAV G R Q DR+LY+  MQ EIL+  +NLDV++  V
Sbjct: 78  DGLCGRICDKSAINYHALNSSHGPAVLGLRAQIDRKLYKEYMQHEILNCTKNLDVMEKAV 137

Query: 125 AG----FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                 +   K      V+ D  ++    +V+TTGTFL G +  G     AGR+G+  S+
Sbjct: 138 DDLVIKYEEGKTPRVGGVVADGEILNAKALVVTTGTFLGGKLFRGSESYAAGRLGEKASS 197

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            L  +F +  F  GR +TGTPARL   TI + K   Q  D + IPFSF+T+ I+   ++Q
Sbjct: 198 KLSETFSRLGFKLGRFRTGTPARLFKNTIDFSKFAAQRPDRKPIPFSFLTEHISLPYHQQ 257

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +   +  TN    ++++++         +  + GPRYCPS+E K++RF   N H+IFLEP
Sbjct: 258 LPSYLGFTNNLLAQMVLKHFNECNYIRSE--ANGPRYCPSLESKVIRFPHLN-HRIFLEP 314

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++D++YP G+S     E+Q +  R IPGLE V I + GY IEYDY++PK+L  TL+T
Sbjct: 315 EGLDSDLIYPQGMSMTFAPEVQLEVYRCIPGLENVEISQAGYGIEYDYVDPKQLKLTLQT 374

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLFLAGQINGTTGYEEAAAQG+VAGIN+A  S         RT+ YIGV+IDDLTS
Sbjct: 375 KAVEGLFLAGQINGTTGYEEAAAQGIVAGINAAASSQNKKPFVIDRTEGYIGVLIDDLTS 434

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE R+ LRPDNAD RLT  G + G + E R  RF K +  YN  + L
Sbjct: 435 LGTSEPYRMFTSRAELRLHLRPDNADMRLTKKGYEHGAVSEHRYNRFLKMLSAYNKAQDL 494

Query: 478 LKSLVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPD--ARKFSSLV 532
           LKS +    N     I   ++    K  +A++ L   +     +    P    R   +  
Sbjct: 495 LKS-IKYPMNFWKKLIPCLENARVTKVYSAFDLLCRYEVDFMEIQKAVPFELERLLENKE 553

Query: 533 IE-RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           IE RL+IE+ Y  Y  + + + + I+ E   +IP +FDYS L  +S E +EKL+  +P N
Sbjct: 554 IEYRLKIEAXYYFYLDKSLAKIERIRKECDTIIPDNFDYSKLNNISEECREKLNFWRPQN 613

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           L  AS++ G T  AL  LL ++K
Sbjct: 614 LAAASRVPGATTEALMELLNFLK 636


>gi|288573675|ref|ZP_06392032.1| glucose inhibited division protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569416|gb|EFC90973.1| glucose inhibited division protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 626

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/613 (41%), Positives = 348/613 (56%), Gaps = 5/613 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAGCEAA VAA++G  T L+      I  M CNP+IGG  KGHLVR
Sbjct: 1   MTNKVYDVIVVGAGHAGCEAALVAARMGHDTLLLNLYLDNIALMPCNPSIGGPAKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDV 119
           EI AL G   R  D + +  R LN  KGPAVR  R Q D   Y     RE+L     L++
Sbjct: 61  EISALGGEQARATDRSALMMRWLNTSKGPAVRALRAQCDLHDYHWHY-REVLEHCPGLEL 119

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V G   E + +  +           +V+LTTGT+L G +HIG +   +G +G  P+
Sbjct: 120 HQDTVVGLIVEGDRVKGVETLYGLSYHARSVILTTGTYLDGRVHIGNVNFSSGPLGQIPA 179

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
           + L  + +K  F  GRLKTGT  R+   +I W + + Q  +E              R I 
Sbjct: 180 HGLGENLLKLGFRMGRLKTGTTPRVHSDSIDWSELQIQEGEEEPQSMDLWDKPEVYRHIT 239

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CG+ +TNL+THRII EN+  S + SG I   GPRYCPSIE K+++F +++ H +F EP  
Sbjct: 240 CGVGKTNLDTHRIITENLDRSPVSSGTITGTGPRYCPSIESKVMQFPDKDSHTVFFEPVA 299

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             +  +Y    ST+LP ++Q +  RT+PG  +  I+R GYAIEYDY++P +L P LETK 
Sbjct: 300 RGSKEIYLQNFSTSLPYDVQIEMTRTLPGCREARIMRAGYAIEYDYMDPTQLTPWLETKA 359

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGT+GYEEAAAQGL+AGIN+  +      +   R ++YIGV+IDDL +KG
Sbjct: 360 IKGLFCAGQINGTSGYEEAAAQGLMAGINAVLRLRGEPYLVLGRHEAYIGVLIDDLVTKG 419

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLL 478
             EPYRM TSR E+R+ +R DNAD RL+ IG KLG + + R +   +  +  +  ++ L 
Sbjct: 420 TREPYRMLTSRCEHRLLMRHDNADRRLSGIGRKLGLLDDGRWEILVERWRNTDREIKRLG 479

Query: 479 KSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +  S +++S   SI      ++ T  E L  P      L    P        +  R+
Sbjct: 480 STRIKPSDDVNSDLASIGEAPMDRSLTGAELLRRPGVDYDFLSRYIPSGEDLEGHIRRRV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++E  YA Y  RQ    K+ +  E   IP DFDY S+  L  E  EKL  ++P  L QA 
Sbjct: 540 EVEIKYAGYVARQERSVKKFERMEALTIPDDFDYRSMKGLLAESLEKLERIRPKTLGQAR 599

Query: 597 KIEGMTPAALNLL 609
           +I G+TP  L LL
Sbjct: 600 RISGVTPTDLQLL 612


>gi|300362684|ref|ZP_07058860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri JV-V03]
 gi|300353675|gb|EFJ69547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri JV-V03]
          Length = 633

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/618 (41%), Positives = 360/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 11  YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 71  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQAVAD 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 131 ELIVENGVCKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKLPEN 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 191 LEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSCYMT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG NT 
Sbjct: 251 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRNTK 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 311 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIEHL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 371 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G KLG I E R  +F    Q  +   + +K + +
Sbjct: 431 YRLLTSRAEYRLLLRHDNADLRLTEKGHKLGLISEERYAKFEAKKQAISRAMAAIKKVTI 490

Query: 484 -TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +          V E+++I  
Sbjct: 491 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVEIAL 550

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 551 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 610

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 611 VNPADLAILTAYIQQGRI 628


>gi|86144116|ref|ZP_01062453.1| glucose-inhibited division protein A [Leeuwenhoekiella blandensis
           MED217]
 gi|85829378|gb|EAQ47843.1| glucose-inhibited division protein A [Leeuwenhoekiella blandensis
           MED217]
          Length = 625

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 384/625 (61%), Gaps = 26/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAAA AA  G+ T L+T    TI  MSCNPA+GG+ KG +VREIDAL
Sbjct: 8   YDVIVVGGGHAGCEAAAAAANSGSKTLLVTMNLQTIAQMSCNPAMGGIAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G  G V+D   IQF++LN  KGPA+  PR Q+DR    E +RL ++    +  NLD  Q
Sbjct: 68  GGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLE----NTANLDFYQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G   E + ++ +       I+  +V+LT GTFL G+IHIG+ +   GR G+  +  
Sbjct: 124 EMVNGLLVEGDRVAGVRTSLGIEIKSKSVILTNGTFLNGLIHIGEKQFGGGRAGERKATG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FSF    K   +Q  C
Sbjct: 184 ITEQLVDLGFDSGRMKTGTPPRVDGRSLDFSKMIEQPGDEDPQKFSFSNATKPLTKQRSC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ++ T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 244 QMSYTSPEVHNLLREGFDRSPMFNGRIQSTGPRYCPSIEDKINRFADKDRHQLFVEPEGW 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT   Y NG ST+LPEE+Q + +R + G E V   RPGYAIEYDY  P +L  TLETK +
Sbjct: 304 NTIEYYVNGFSTSLPEEVQFKALRQVSGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAA+QGLVAG+N++ K  + D     R ++YIGV++DDL +KG 
Sbjct: 364 DGLYFAGQINGTTGYEEAASQGLVAGLNASLKVQEKDPFILKRDEAYIGVLVDDLITKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSLLK 479
            EPYRMFTSRAEYR  LR DNAD RLTP   ++G    ER Q    K  Q  N    L++
Sbjct: 424 KEPYRMFTSRAEYRTLLRQDNADARLTPRSFEVGLASKERMQALEKKEAQAVN----LVE 479

Query: 480 SLVLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKF------ 528
               TS      +    + G T         +  S P  +++++ S   D +++      
Sbjct: 480 FFNTTSIQPEEANPVLAEKGTTPMKQSDKMVKIFSRPQIALEDMLSF-KDVKEYVAENNL 538

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            + V+E+ +I   Y+ Y  ++   A +++  E   IP +FDY+ L +LS E +EKL+ ++
Sbjct: 539 ETEVLEQAEIRIKYSGYIEKEKANADKLQRLENIKIPDNFDYTKLKSLSYEAREKLTKIQ 598

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P  + QAS++ G++P+ ++++L+Y+
Sbjct: 599 PTTISQASRVSGVSPSDISVMLVYM 623


>gi|325913679|ref|ZP_08176041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 60-B]
 gi|325477038|gb|EGC80188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 60-B]
          Length = 630

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 363/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNIRHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPHVTFDAIEKLTGKKLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|251772738|gb|EES53300.1| glucose inhibited division protein A [Leptospirillum
           ferrodiazotrophum]
          Length = 613

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 274/617 (44%), Positives = 362/617 (58%), Gaps = 26/617 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGGHAG EAA  +A+ G+ T L+T     IG MSCNP++GG+GKGH+VREIDA+
Sbjct: 10  WDVVVVGGGHAGIEAAYASARQGSRTLLLTLHLDFIGQMSCNPSVGGIGKGHIVREIDAM 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG +AD + +Q RVLN +KG AV+  R Q DR  YR   +R + S   L + QGEV 
Sbjct: 70  GGAMGSLADQSALQLRVLNTRKGAAVQAIRAQCDRHRYRTLARRLLDSHPLLFLRQGEVV 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + +SS+ + D S I    +VLT+GTFL G +HIG      GR G+  S SL   
Sbjct: 130 SLERSGDRLSSLALSDGSRIFFDALVLTSGTFLNGQLHIGLSSTSGGRGGERSSLSLSQF 189

Query: 186 FMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-----ITNRQIE 239
             +      GRLKTGTP RL G+++ + + E Q  DE L  FS ++            + 
Sbjct: 190 LSEECGLSLGRLKTGTPPRLHGRSLDFSRMEPQPGDEPLPFFSQLSPPPEGLFFGGSSLP 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  ET  II +N+  S +YSG I+  GPRYCPSIEDKIV+F +   H IF+EPEG
Sbjct: 250 CYLTHTTPETRDIIQKNLDRSPLYSGKIRGIGPRYCPSIEDKIVKFPDHLTHHIFIEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+ D  YPNGIST+LP ++Q Q + +IPGLE   I+RPGYA+EYD++ P +L  TL  K 
Sbjct: 310 LDVDEFYPNGISTSLPVDVQEQILSSIPGLENAIILRPGYAVEYDFVFPDQLHHTLAVKS 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              LFLAGQINGTTGYEEAA QGLVAGIN+AR S  L      R  SYIGVM+DDL +  
Sbjct: 370 TPNLFLAGQINGTTGYEEAAGQGLVAGINAARHSQGLSTWTPDRQSSYIGVMVDDLVTHS 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRMFTSRAE R+ +R DNA  R+TP  + LG +  ++ + F   I+  N LR+LL 
Sbjct: 430 IDEPYRMFTSRAENRLYIRNDNAVERMTPQALALGLLSPQQIEAFNDRIEYQNSLRALLH 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICPDARKFSSLVIERLQI 538
           S  L  K+L                +  L  PD +++ L      D      L ++ L+ 
Sbjct: 490 SSRLEGKSL----------------HHRLRSPDVTLRQLLREQAIDFSAIPPLWLDALEQ 533

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y    M     +       IP  F    +P LSNE++ +L   +P  L QA  +
Sbjct: 534 EIKYEGYVRISMDRWDRMA---DLPIPPSFFDRDIPGLSNEVRTRLRKSRPTTLHQALSL 590

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTP A++LL IY+ K
Sbjct: 591 RGMTPGAIDLLRIYLTK 607


>gi|171920648|ref|ZP_02931885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867356|ref|ZP_03079360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|171903380|gb|EDT49669.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195660832|gb|EDX54085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 614

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/614 (40%), Positives = 366/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I    V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIHADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNRQIECG 241
           NS  K  F+  RLKTGTPAR+   +I +     +    + I F+    T K    Q+ C 
Sbjct: 182 NSLAKLGFELIRLKTGTPARIKKDSIDFTNMIVEPGTNQKIAFNHYHPTYKPYEEQVPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNETTHQIIRENLDKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLEDCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN ++K    + I   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVSQKHKNKEPIVLGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++ N + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQINEVLNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEVKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKKLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|309804868|ref|ZP_07698930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 09V1-c]
 gi|309809721|ref|ZP_07703575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312871148|ref|ZP_07731246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 3008A-a]
 gi|312874789|ref|ZP_07734808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912328|ref|ZP_08174725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 143-D]
 gi|308165807|gb|EFO68028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 09V1-c]
 gi|308169900|gb|EFO71939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311089534|gb|EFQ47959.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093162|gb|EFQ51508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 3008A-a]
 gi|325475987|gb|EGC79156.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 143-D]
          Length = 630

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 363/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNIRHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKKLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|309775308|ref|ZP_07670317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916971|gb|EFP62702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/617 (41%), Positives = 378/617 (61%), Gaps = 11/617 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L  +T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLKKTTILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ+++L Q +L+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLAYKQYMQQKVLQQPHLEVREMCVEQ 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   ++ I  +D  ++ C  +++TTGTF+   I +G     +G   +  + +L  S 
Sbjct: 123 VLAEDGRVTGIRQKDGVVVNCRALIVTTGTFMSSSILVGHTSTLSGPEDEPTTENLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGITR 244
            +    T RLKTGTPAR+   +I + KT  Q   +  I FS  T +I   ++Q  C +T 
Sbjct: 183 RELGIQTFRLKTGTPARVLTSSIDFTKTAIQPGTDAFICFSQDTKEIRPFDKQAVCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II  N++ SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TTAKTHDIINRNLERSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q + + ++PGLE   I +  YAIEYD I+P +  PTLE K +  L+
Sbjct: 303 TYVQGFSTSMPHDVQEEMLHSLPGLENCVIEKYAYAIEYDAIDPLQCKPTLENKLVENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+ RK ++ + +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLIAGINAVRKLDQKEPLILHRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+  G  +G + + R  RF K +++     S L S+  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADARLSRYGHDIGLLSDERFARFEKKMKDIEETISYLDSVRFT 482

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K+     L + S+   ++G   +A E L  P  +I +L     D R+    + + ++IE
Sbjct: 483 PKSTVNELLQTLSLDVLKEGI--SAAELLKRPGVTI-DLLQPYLD-RRIDIAIAKLVEIE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +A+ ++  ++  +P+ FDY  +  LS E ++KL+ ++P  + QAS+I 
Sbjct: 539 IRYEGYIKKAKRDAQHLRAMDQVRLPEHFDYDQVVNLSLEARQKLNKIQPLTMGQASRIS 598

Query: 600 GMTPAALNLLLIYIKKN 616
           G+ PA + +L +++++ 
Sbjct: 599 GVNPADIAVLAVFMEQQ 615


>gi|323342281|ref|ZP_08082513.1| glucose inhibited division protein A [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463393|gb|EFY08587.1| glucose inhibited division protein A [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 616

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/615 (40%), Positives = 370/615 (60%), Gaps = 9/615 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  +A++G  TAL T     I SM CNP+IGG  KG +VREI+AL
Sbjct: 2   YDVIVVGGGHAGVEAAVASARMGQRTALFTLNVDKIASMPCNPSIGGPAKGIVVREIEAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG++AD   +QFR+LN  KGP V+  R Q+D+  Y  AM+  +L++  ++++Q  V 
Sbjct: 62  GGVMGKIADKTALQFRILNSSKGPGVQCLRVQSDKLAYSRAMRDAVLAEPGIEIVQKMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E  +++ +  + +  +   TV++T+GT++   I +      +G  GD  +N+L  S
Sbjct: 122 GVVAENGVVTGVRCKGDEFVAAKTVIITSGTYMSSKILLSSTVTVSGPDGDPTTNNLSES 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                  T RLKTGTPAR+   +I + KT  Q  D+    FS  T  D +   Q  C +T
Sbjct: 182 LRALGLKTFRLKTGTPARVYTDSIDFSKTTIQPGDDEPYYFSNSTKKDDVIKEQYPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N++ S++YSG ++  G RYCPSIEDKIVRF ++N HQIFLEPE    D
Sbjct: 242 YTNPTTHDLIEANLEKSSMYSGVVEGVGARYCPSIEDKIVRFSDKNRHQIFLEPESAELD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q   IRT+PGLE   + R GYAIEYD I+P +L P+LE   +  L
Sbjct: 302 TTYVQGLSSSLPEDVQDAMIRTVPGLENCRVQRYGYAIEYDAIDPIQLKPSLEIMTVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+A K+   + +   R ++YIGVM+DDL +KG LEP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLMAGINAALKNQGKEPLILKRDEAYIGVMLDDLVTKGTLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNA  RL+  G ++G + +   ++    IQ  +      K++ L
Sbjct: 422 YRLLTSRAEYRLLLRHDNAYRRLSHFGHEIGLLSDEDYEKIELDIQIIDEFIEASKTIKL 481

Query: 484 TSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIE 539
                     + K         T Y+ +  P   +  +  +   + RK  +    ++Q+E
Sbjct: 482 PHNPEFEAYFAEKDSPFQAHDLTIYDAVKRPGIELLEVLELMDMEVRKDLAF---QIQVE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M EA++++  E   +P+D +Y S+  LS E ++KL+ ++P  + QAS+I 
Sbjct: 539 IKYEGYIKKAMKEAEKLRSMENIKLPEDINYDSIENLSIEGRQKLTAVRPITMGQASRIS 598

Query: 600 GMTPAALNLLLIYIK 614
           G+ PA + +L + +K
Sbjct: 599 GVNPADIAILAMVLK 613


>gi|307109991|gb|EFN58228.1| hypothetical protein CHLNCDRAFT_20360 [Chlorella variabilis]
          Length = 705

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/636 (42%), Positives = 360/636 (56%), Gaps = 56/636 (8%)

Query: 31  TALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           T L+T   S +IG MSCNP+IGG+ KG LVRE+DALDGLM R ADAAGIQFR+LN  KGP
Sbjct: 41  TLLVTPSPSASIGEMSCNPSIGGVAKGTLVREVDALDGLMARAADAAGIQFRMLNASKGP 100

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV--------MQD 141
           AVRGPR Q DR LY+ A+QR +     L +  G V     E                +  
Sbjct: 101 AVRGPRAQMDRVLYKWAVQRMLGGVPGLAIHDGAVVDLLVEPRPSGGGPGPVVAGVVLAS 160

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD------------------------- 176
              I C +VV+TTGTFLRGVIH+G    PAGR+                           
Sbjct: 161 GERILCRSVVVTTGTFLRGVIHVGSHSRPAGRIASLTSAREASRPEAAREAELTDEADVT 220

Query: 177 --SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
               +  L   F    F  GRLKTGTP RLDG+TI W   E+Q  D    PFSF+  +  
Sbjct: 221 AAGAATRLARRFADLGFALGRLKTGTPPRLDGRTIDWSVCEEQPGDGAPTPFSFLHLQQP 280

Query: 235 NR-----QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG----PRYCPSIEDKIVRF 285
                  Q+ C  TRT   +  ++++ +       G   + G    PRYCPS+E K  RF
Sbjct: 281 GWSPPAGQVSCFGTRTTAASEALVLDCMASGERRDGMTVAQGGCVEPRYCPSLETKFRRF 340

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
             R  H ++LEPEGL TDVVYPNGIS ++  E Q + ++TIPGL    ++ P YA+EYDY
Sbjct: 341 PGRT-HHVWLEPEGLGTDVVYPNGISNSMEPEDQLRLLQTIPGLGAARMLAPAYAVEYDY 399

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           ++P+EL PTLET+++ GL+LAGQINGTTGYEEAAAQGLVAG N+A    + D +  SR D
Sbjct: 400 VDPRELAPTLETRRLRGLYLAGQINGTTGYEEAAAQGLVAGANAAAPGGR-DPLLLSRAD 458

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            Y+GV++DDL  +G  EPYRM ++RAE+R+ LRPDNAD RLT  G++LG +G  R   F 
Sbjct: 459 GYLGVLVDDLVGRGTSEPYRMLSARAEFRLRLRPDNADLRLTEAGLQLGLVGAERAASFQ 518

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---- 521
           +  Q+      LL ++ L+S   +   +   QDG   +A + L+ P  ++  L +     
Sbjct: 519 QRRQQVEDAEQLLDAIQLSSSAWARRGLHVSQDGDYISAAQMLTRPGITLSQLAAAAAAE 578

Query: 522 -CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P  ++   L         S   Y  +   E  E++ +E  LIP+  DYS+L  LS E 
Sbjct: 579 QVPGWQQLQELAA---AAAVSAVPYLEKMEAEVAELRRDEALLIPEWLDYSAL-QLSAED 634

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +EKL+  +P +L  A +I G+TP+AL LLL +++K 
Sbjct: 635 REKLTAARPTSLAAAQRIPGVTPSALLLLLQHVRKR 670


>gi|320587853|gb|EFX00328.1| mitochondrial translation optimization protein [Grosmannia clavigera
            kw1407]
          Length = 1223

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/618 (41%), Positives = 362/618 (58%), Gaps = 58/618 (9%)

Query: 33   LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
            LIT K   +G  SCNP+ GG+GKG ++REIDALDGL+GRV D AG+QFRVLN  KGPAV 
Sbjct: 601  LITPKLDNLGVCSCNPSFGGIGKGIILREIDALDGLVGRVVDQAGVQFRVLNRSKGPAVW 660

Query: 93   GPRTQADRELYRLAMQREILSQENLDVIQGEVA--------------------GFNTEK- 131
            GPR Q DR LY+  M+  +    NL +++G V+                    G+  ++ 
Sbjct: 661  GPRAQIDRGLYKQHMREMLEGYPNLSILEGSVSDIVVAEARGDEWRMGGVEENGYEKQQA 720

Query: 132  -NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
               I+ + ++   ++R   VV+TTGTFL G IHIG    PAGRMG++P+  L  S  +  
Sbjct: 721  SRRITGVRLETGEVVRTGRVVITTGTFLGGEIHIGMETRPAGRMGEAPTYGLSRSLREAG 780

Query: 191  FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--TDKITNR---QIECGITRT 245
            F  GRLKTGTP RLD +TI +   E Q  DE  +PFS+M  T  +++R   Q+ C  T T
Sbjct: 781  FALGRLKTGTPPRLDRRTIDYGALEAQRGDEPAVPFSYMDSTVAVSSREGGQLLCHATYT 840

Query: 246  NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
            N  TH I+  N+  +      +K  GPRYCPS+E K+ RFG +  H ++LEPEG  +DVV
Sbjct: 841  NAATHAIVRANLDKTVHIRESVK--GPRYCPSLESKVQRFGHKERHIVWLEPEGFGSDVV 898

Query: 306  YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
            YPNG+S  +P   Q Q +RTI GLE+V +++PGY +EYDY++P+ L  TLETK I+GL+L
Sbjct: 899  YPNGLSMTVPATAQEQLLRTIGGLERVTMLQPGYGVEYDYVDPRGLRATLETKAIAGLYL 958

Query: 366  AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
            AGQINGTTGYEEAA QG+VAGIN+ R +  L+                     GV EPYR
Sbjct: 959  AGQINGTTGYEEAAGQGVVAGINAGRAAQGLEA--------------------GVSEPYR 998

Query: 426  MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
            MFT+R+E+R+S R DNAD RLTP+G + G +G+ R  RF +   +   LR +L++ V ++
Sbjct: 999  MFTTRSEFRLSARFDNADARLTPLGRRWGVVGDVRWARFERDRDQAAALRGVLQTTVRSA 1058

Query: 486  KNLSSTSISFKQDGKTRTAYEFLSYPDF-SIQNLF------SICPDARKFSSLVIERLQI 538
                    + + D + R   + L       I +L       ++  DA  FS+ +  R+ I
Sbjct: 1059 PAWRRLGFAVRDDSRMRDGLDMLRVGGVDGIDDLVARGGVDALLVDA--FSADIRRRVAI 1116

Query: 539  ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            E+ YA Y   Q +E   +  ++   +P D DY+++  LS   K  L+  +P +L QA ++
Sbjct: 1117 EAMYAPYETIQSVERARVARDDALRLPTDLDYAAVVGLSLAEKAVLAATRPESLAQARRV 1176

Query: 599  EGMTPAALNLLLIYIKKN 616
            EGMTP     LL ++ + 
Sbjct: 1177 EGMTPVGCVRLLAHVHRT 1194


>gi|307069506|ref|YP_003877983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (gidA) [Candidatus Zinderia insecticola CARI]
 gi|306482766|gb|ADM89637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (gidA) [Candidatus Zinderia insecticola CARI]
          Length = 624

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/626 (43%), Positives = 395/626 (63%), Gaps = 20/626 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVI+IGGGHAG EAA + + + + T LI++    IG +SCNP+IGG+GK HLV+EID
Sbjct: 5   KKFDVIIIGGGHAGIEAANICSNMNSITLLISNNIELIGELSCNPSIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           +L G+MG  +D + I F++LN  KG AV+  R Q DR++Y+ ++  ++ +++NL + QG 
Sbjct: 65  SLGGIMGICSDESSINFQILNYSKGNAVKSTRVQLDRKIYKDSIINKLKNKKNLFLFQGI 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     EKNI+  I  ++N +     +++TTGTF   +IHIG     +GR+G++ ++ LF
Sbjct: 125 IDDIIIEKNIVLGIKTKNNFIFLSKCLIITTGTFFNPLIHIGNYSYISGRLGENLNSKLF 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               KF F    LKTGTP RLDGK+I + K +KQF +  +  FS ++D KI  +QI C I
Sbjct: 185 EKLKKFGFQYSTLKTGTPPRLDGKSINFLKLKKQFLNSNIQYFSILSDNKIKKKQINCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  T+ II +NI  S++++G+I S GPRYCPSIEDKI +FG++  H+IFLEPEGLN+
Sbjct: 245 TNTNFYTYYIIKKNIYQSSLFNGNINSIGPRYCPSIEDKINKFGKK-KHKIFLEPEGLNS 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIS +LP EIQ + +RT+ GLE VNI RPGY+IEY+Y     L  +LE+K IS 
Sbjct: 304 NEFYPNGISNSLPIEIQIKILRTLNGLENVNITRPGYSIEYNYFIGNHLKHSLESKIISN 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA+QG++AGIN++ KSN        R  +YIGV+IDDL  K + E
Sbjct: 364 LFFAGQINGTTGYEEAASQGIIAGINASLKSNNKKKWYPKRYQAYIGVLIDDLIKKKINE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+FT+ +EY+++LR DN   RLT IG KL C+  ++   F K  + +     LLK+ +
Sbjct: 424 PYRIFTTSSEYKLNLREDNVYLRLTEIGRKLKCVKNKQWFLFKKKKKIFKKKIRLLKTNL 483

Query: 483 LTSKNLSSTSISFKQDG-KTRTAYEFLSYPDFSIQNLFSICPDA------------RKFS 529
           LT  N+ ++ I+F  +  K +  Y F     F I N F +  D             + F 
Sbjct: 484 LTFNNIKNSKINFLFNNIKKKNIYSF-----FEIINKFKLNYDNFFNIFTNNNFKYKIFE 538

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++    Y  Y  +Q+    +I   +   I K+ +Y+ + +LS E K K +ILKP
Sbjct: 539 NDIKEQIENFCKYYGYYNKQLKNILKINKNKNYKINKNLNYNFIKSLSKEAKIKFNILKP 598

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            NL +A  I G+    +  L  YIKK
Sbjct: 599 NNLKEALSISGIDFNDILNLFFYIKK 624


>gi|309805920|ref|ZP_07699952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
 gi|312873295|ref|ZP_07733350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2052A-d]
 gi|308167696|gb|EFO69843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
 gi|311091175|gb|EFQ49564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2052A-d]
          Length = 630

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 362/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNIRHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAITTTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKNLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|294055630|ref|YP_003549288.1| glucose-inhibited division protein A [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614963|gb|ADE55118.1| glucose-inhibited division protein A [Coraliomargarita akajimensis
           DSM 45221]
          Length = 638

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/647 (40%), Positives = 377/647 (58%), Gaps = 60/647 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ YDVI+ G GHAGCEAA  AA++GAST ++T    TI  MSCNPAIGG  KGH+VREI
Sbjct: 10  NQPYDVIICGAGHAGCEAALAAARMGASTLMLTGNLDTIAQMSCNPAIGGQAKGHIVREI 69

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D   IQFR+LN  KGPAV+ PR Q D++ Y+  M+  I  Q NLD+ Q 
Sbjct: 70  DALGGEMAVNTDTTAIQFRLLNATKGPAVQAPRAQCDKKAYQYRMKHVIELQPNLDLFQA 129

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V G       +  +    +      TVV+TTGTFLRG++H+G+     GRMGD  +  L
Sbjct: 130 TVEGLIYRSGRVVGVRTNLDVEFYGHTVVVTTGTFLRGLMHVGQNMNEGGRMGDFSAKGL 189

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ----------FADERLIPFSFMTDK 232
             SF++   +  RLKTGTPAR+ G +I ++  E+Q          F D R +   F  + 
Sbjct: 190 SGSFLEAGIELERLKTGTPARILGSSINFEGLEEQEGDALPTLFAFYDTRGVDDVFHVEH 249

Query: 233 ITNR----------------------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
            ++                       Q+ C +T T+ ET  ++ EN+  SA+YSG+I+  
Sbjct: 250 SSDAERALFHVEHSGQRKLGWAPGTDQVSCYMTYTSAETQSVVHENLHRSAMYSGEIEGT 309

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK VRF +++ H +FLEPEG NT+  Y NG+ST+LP ++Q   +R++ GLE
Sbjct: 310 GPRYCPSIEDKFVRFKDKDRHMLFLEPEGRNTNEWYINGLSTSLPFDVQLAMLRSVQGLE 369

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           KV+++RP YA+EYD+  P +L+P+LE+K++  LF AGQINGT+GYEEAA QGLVAG+N+ 
Sbjct: 370 KVHMLRPAYAVEYDFAPPTQLYPSLESKQVENLFFAGQINGTSGYEEAAGQGLVAGVNAV 429

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           +K   L+ +   R + Y+GV+IDDL +KG  EPYRMF+SRAE+R+     +A+ RL    
Sbjct: 430 QKLRGLEPMVLKRHECYLGVLIDDLVTKGTKEPYRMFSSRAEHRLLFNHPSAELRLKHHS 489

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG----KTRTAYE 506
             +G +   R +R      +   +RS +         L S  +  +  G    +TR+  +
Sbjct: 490 SAMGLVDPERMQRIEA---KDRAIRSWVD-------RLESERVGGQLYGDIVRRTRSVSD 539

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
           F   PD           D +     V + +    ++  Y  R+  + ++++  +K LIP 
Sbjct: 540 F---PD-----------DLKALPREVKDEVMYRVAFRGYLEREAKQIEKMRHIDKILIPT 585

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           DFD+  +  L NE  EKL+ + P  L QA +I G+ PA +++L++Y+
Sbjct: 586 DFDFRKVRGLRNESAEKLAAISPRTLGQAGRISGVNPADISILMVYL 632


>gi|312872751|ref|ZP_07732816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091793|gb|EFQ50172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 630

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/619 (42%), Positives = 362/619 (58%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNIRHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLDRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS+ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAIATTMKNIKSITI 488

Query: 484 -TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             ++ + +     KQD   G    A +FL  P  +   +  +          V E+++I 
Sbjct: 489 HPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKNLAADRYVKEQVEIA 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +I 
Sbjct: 548 LKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAERIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA L +L  YI++  +
Sbjct: 608 GVNPADLAVLTAYIQQGRI 626


>gi|309807861|ref|ZP_07701793.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 01V1-a]
 gi|329919809|ref|ZP_08276760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 1401G]
 gi|308168963|gb|EFO71049.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 01V1-a]
 gi|328937156|gb|EGG33584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 1401G]
          Length = 630

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/629 (41%), Positives = 363/629 (57%), Gaps = 27/629 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+DAL
Sbjct: 9   YDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG   
Sbjct: 69  GGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQGMAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKLAEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C +T
Sbjct: 189 LEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG  T 
Sbjct: 249 YTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGWKTR 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNIRHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +          ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHNLGLISEERYQEFLHKKE----------AIAM 478

Query: 484 TSKNLSSTSI-----------SFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           T KN+ + +I             KQD   G    A +FL  P  +   +  +        
Sbjct: 479 TMKNIKAITIHPTEEVQNYLKDIKQDALNGAVNGA-DFLKRPRVTFDAIEKLTGKKLAAD 537

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E+++I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P
Sbjct: 538 RYVKEQVEIALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            ++ QA +I G+ PA L +L  YI++  +
Sbjct: 598 ESIAQAERISGVNPADLAVLTAYIQQGRI 626


>gi|170288483|ref|YP_001738721.1| glucose inhibited division protein A [Thermotoga sp. RQ2]
 gi|205831569|sp|B1L9P0|MNMG_THESQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170175986|gb|ACB09038.1| glucose inhibited division protein A [Thermotoga sp. RQ2]
          Length = 626

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/621 (41%), Positives = 378/621 (60%), Gaps = 11/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V    TEK  +  +V  DN  I      V++TTGTFLRG I IG+   PAGRMG+ P+ 
Sbjct: 126 IVERILTEKGRVKGVV--DNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPAT 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   
Sbjct: 184 KLTESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           C +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EP
Sbjct: 244 CWLTRTNPETHSIIKQYLEFSPLYGTVKLIEGIGPRYCPSIEDKVVKFKDKESHQVFVEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+  Y NG+ST+LP E Q + IR++ GLE   + RP YAIEYDYI+P++L+PTLE+
Sbjct: 304 EGRDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIVTRPAYAIEYDYIDPRQLYPTLES 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 364 KLVENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N     
Sbjct: 424 KGVDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIER 483

Query: 478 LKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           LK +++   +  +   TS+      ++ + Y+ L  P  S   L  + P+       V+E
Sbjct: 484 LKKVIVKPSDRVNDLLTSLGTSPLKESVSLYQLLKRPQLSYSALKFLDPNPID-DPEVVE 542

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y  +   E    +  E   IP D DY ++P LS E ++KL  ++P ++ Q
Sbjct: 543 QVEINVKYEGYIQKMFEEVAVFEKYENYEIPHDLDYDAVPNLSTEARDKLKKIRPRSIGQ 602

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A +I G+ P+ ++ L+IY+ +
Sbjct: 603 AMRIPGINPSDISNLIIYLDR 623


>gi|13357595|ref|NP_077869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762033|ref|YP_001752118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13626942|sp|Q9PRA6|MNMG_UREPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039365|sp|B1AI24|MNMG_UREP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|11277859|pir||D82942 glucose inhibited division protein UU039 [imported] - Ureaplasma
           urealyticum
 gi|6898986|gb|AAF30444.1|AE002103_9 glucose inhibited division protein [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827610|gb|ACA32872.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 614

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 368/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +V+ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +   + + + +Y+     ++ +L  L
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLL---KPEVYDQYLNNLKQIKEILNWL 478

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T+       + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 479 KTTTVG-QIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|325268313|ref|ZP_08134946.1| glucose inhibited division protein A [Prevotella multiformis DSM
           16608]
 gi|324989455|gb|EGC21405.1| glucose inhibited division protein A [Prevotella multiformis DSM
           16608]
          Length = 623

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/622 (41%), Positives = 365/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q +  
Sbjct: 65  GGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   +    S
Sbjct: 125 ELLTENGKVLGIRTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHHFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C    T
Sbjct: 185 ITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCWTCNT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ +
Sbjct: 245 NEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPWEIQLEAIHRIPALRNAKIYRPGYAIEYDYFDPTQLKHSLESKIIDGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGTVAGINAALLCAGKAPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    +LG     R+ R+  ++Q+   +  +      TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEQAYRLGIA---RRDRYEWWLQKKEHISRITDFCNNTS 481

Query: 486 KNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
                 +   +Q G +         + ++ P  + +NL ++ P  ++           + 
Sbjct: 482 VKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFENLSAVVPALKEAIEASPNRQEEIA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ + A+++   E   I   FDY  L  LS E ++KL  ++P  L 
Sbjct: 542 EAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYGRLHDLSTECRQKLERIQPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLMGR 623


>gi|313887477|ref|ZP_07821166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923119|gb|EFR33939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 638

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/625 (41%), Positives = 371/625 (59%), Gaps = 19/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VREIDAL
Sbjct: 18  FDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQ 121
            G  G+++DAA IQ+R+LN  KGPA+  PR Q DR    EL+R  + R        D + 
Sbjct: 78  GGYTGQMSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDRTDRLALWQDFVV 137

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G    K+++   V Q       + V+LT GTFL G++H GK  IP GR+ +  S+ 
Sbjct: 138 DIKFGAEDSKHLV---VTQLGMTFTAAKVILTAGTFLGGLMHFGKTMIPGGRISEPASHG 194

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           +    +       R+KTGTPA +DG+++ W   E+Q  DE    FSF+  + +  RQ  C
Sbjct: 195 ITECLVAAGHHADRMKTGTPACIDGRSVDWSLVEEQPGDEEAGRFSFLPMQRSQLRQRSC 254

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLEPEG 
Sbjct: 255 YILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLEPEGE 314

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+  Y NG S++LP + Q + ++TIP L  V + RPGYAIEYD+ +P++L  TLE+K +
Sbjct: 315 ETNEYYLNGFSSSLPIDTQIRALQTIPALRDVQLYRPGYAIEYDFFDPRDLHHTLESKLV 374

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL +KGV
Sbjct: 375 PGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLVLRRDEAYIGVLIDDLVTKGV 434

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  +    L +L  +
Sbjct: 435 DEPYRMFTSRAEYRILLRQDNADLRLTPYAEQLGLATAERLSRLEQIKEGIAALDNLCAN 494

Query: 481 LVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSL----- 531
             +  + ++   +S  +   D  T+     L  P  S+  L +     A + + L     
Sbjct: 495 YSVKPEEVNGYLVSLGEKPLDFGTKLT-TLLLRPHVSLSGLIAQLDGFATQVAGLIGDDE 553

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++ R +    Y  Y  R+   A+++   E   +    DY  + AL  E +EKLS ++P 
Sbjct: 554 EILTRTETAIKYRGYIEREEQAAQKLHRLESLTLGDKLDYQQISALPIEAREKLSRIRPA 613

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G++P+ +N+LL+ + +
Sbjct: 614 TIAQAARIPGISPSDINILLVLLGR 638


>gi|288800538|ref|ZP_06405996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332751|gb|EFC71231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 624

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/627 (41%), Positives = 365/627 (58%), Gaps = 16/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+GGGHAG EAA  A+ +GA T LIT   + IG MSCNPAIGG+ KG +VRE
Sbjct: 1   MNFKYDVIVVGGGHAGNEAATAASNMGAKTCLITIDMNKIGQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + DA  IQFR+LN  KGPAV  PR Q DRE +    +  +   ENLD+ Q
Sbjct: 61  IDALGGQMGLITDATAIQFRMLNRGKGPAVWSPRAQCDREKFITKWKETLDKTENLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +V     + N I  +            V++T GTFL G++HIG+   P GR  +     
Sbjct: 121 DQVDELIVKNNEIVGVKTVWGVEFTAKCVIITAGTFLNGLMHIGRRTFPGGRCAEPAVPH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L          + R+KTGTP R+D +++ +D+ E Q  D     FS+M      +Q+ C 
Sbjct: 181 LTECINHLGIRSDRMKTGTPVRIDKRSVHFDEMEIQDGDFDFHQFSYMNLHKPLKQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              T  E H  + + I  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TFYTTPEAHMELNKGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDKHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P E+Q   +  IP L    I RPGYAIEYDY +P +L  TLE+K + 
Sbjct: 301 TNEMYLNGFSSSMPFEVQLNALHKIPALRDAKIYRPGYAIEYDYFDPTQLKHTLESKVVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-ICFSRTDSYIGVMIDDLTSKGV 420
           GL+ AGQ+NGTTGYEEAA QGLVAGIN+A +    D      R +SYIGV+IDDLT+KGV
Sbjct: 361 GLYFAGQVNGTTGYEEAAGQGLVAGINAALRCFYNDKEFIMKRDESYIGVLIDDLTTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG      ++R+  + Q+   +  +++ 
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADYRLTSKAFELGIA---TKERYDWWKQKEESISKIIQF 477

Query: 481 LVLTSKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKF------- 528
              TS      + S ++ G T         + ++ P  ++ NL  + P            
Sbjct: 478 CDETSIKPKEINASLERLGTTPIHSSIKISDLIARPQLTMNNLAEVIPHLNDILKAVPNR 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            + + E  +I   Y  Y  R+ I A +++  E   I   F+YS L  +S E ++KL  ++
Sbjct: 538 QAEITEAAEIRIKYRGYIERERIIADKMRRLEDIRIKGRFNYSQLHEISTEGRQKLEKIQ 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L +AS+I G++P+ +N+LLI + +
Sbjct: 598 PETLAEASRIPGVSPSDINVLLILLGR 624


>gi|327312874|ref|YP_004328311.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Prevotella denticola F0289]
 gi|326945842|gb|AEA21727.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola F0289]
          Length = 623

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/622 (41%), Positives = 365/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q +  
Sbjct: 65  GGYMGMVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   +    S
Sbjct: 125 ELLTENGKVLGIKTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHHFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C    T
Sbjct: 185 ITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCWTCNT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ +
Sbjct: 245 NEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPWEIQLEAIHRIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKVIDGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGTVAGINAALLCASKAPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    ++G     R+ R+  ++Q+   +  +      TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEQAYEIGIA---RRNRYEWWLQKKANINRITDFCNNTS 481

Query: 486 KNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDAR-------KFSSLVI 533
                 +   +Q G +         + ++ P  + +NL ++ P  +            + 
Sbjct: 482 VKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFKNLSAVVPALKGAIEASPNRQEEIA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ + A+++   E   I   FDYS L  LS E ++KL  ++P  L 
Sbjct: 542 EAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYSRLHDLSTECRQKLERIQPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLMGR 623


>gi|57168067|ref|ZP_00367206.1| glucose inhibited division protein A [Campylobacter coli RM2228]
 gi|57020441|gb|EAL57110.1| glucose inhibited division protein A [Campylobacter coli RM2228]
          Length = 597

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/611 (41%), Positives = 363/611 (59%), Gaps = 43/611 (7%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+ GLMG + D AGIQFR+LN  
Sbjct: 1   MGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNES 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AV+G R Q D + YR+  + ++L   NL++ Q +V     E   +  +     +   
Sbjct: 61  KGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQVCELIYENGSVVGVKTNLQNTYE 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L  + +      GRLKTGT  R+D 
Sbjct: 121 AKKVILTTGTFLNGLIHVGENKLTAGRVGELASVNLGQNLLSTSLKMGRLKTGTCPRVDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           K+I +D  E Q+ D+    FSF T      Q+ C I RTN  TH II  N   + +++G 
Sbjct: 181 KSIDFDVLEIQYGDQNPKAFSFRTKNFNPIQLPCYIARTNTTTHEIIKNNFYRAPLFTGQ 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    Y NG ST+LP E+Q Q +R++
Sbjct: 241 IEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSV 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            G E+  I R GYAIEYDYI P EL+ TLETKKI  L+ AGQINGTTGYEEAAAQG +AG
Sbjct: 301 KGFEEAKITRFGYAIEYDYIEPTELYHTLETKKIKNLYCAGQINGTTGYEEAAAQGFMAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+    +  +     R ++YIGV+IDDL  KG  EPYRMFTSRAE+R+ LR +NA  RL
Sbjct: 361 VNAVLALDNKEPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAIVRL 420

Query: 447 TPIGMKLGCIGERR-------------------QKRFAKYIQEYNFLRSL----LKSLVL 483
              G +LG + +                     +K F    +   FL S+    + S+V 
Sbjct: 421 GKYGKELGLLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITSIVN 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             K ++ +S   ++  K  T +E +   ++S++ + +   +A+ +  + +++ Q+E    
Sbjct: 481 LQKIVARSSFDIEKLKKLNTIFENMD--EYSLREILN---EAKYYHYIAMQKSQVEKM-- 533

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
               + +I+ K         IP DFD++S+  LSNE+ EKL   KP  L  AS+I G+TP
Sbjct: 534 ----KNLIDMK---------IPSDFDFTSVSGLSNEVVEKLQKHKPLTLFAASEISGITP 580

Query: 604 AALNLLLIYIK 614
           AAL++L IYIK
Sbjct: 581 AALDILQIYIK 591


>gi|15643033|ref|NP_228076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga maritima MSB8]
 gi|7674053|sp|Q9WYA1|MNMG_THEMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4980759|gb|AAD35351.1|AE001708_19 glucose-inhibited division protein A [Thermotoga maritima MSB8]
          Length = 629

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/621 (41%), Positives = 377/621 (60%), Gaps = 11/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 9   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 69  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V    TEK  +  +V  DN  I      V++TTGTFLRG I IG+   PAGRMG+ P+ 
Sbjct: 129 IVERILTEKGRVKGVV--DNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPAT 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   
Sbjct: 187 KLTESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYP 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           C +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EP
Sbjct: 247 CWLTRTNPETHSIIKQYLEFSPLYGTVKLIEGIGPRYCPSIEDKVVKFKDKESHQVFVEP 306

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+  Y NG+ST+LP E Q + IR++ GLE   + RP YAIEYDYI+P++L+PTLE+
Sbjct: 307 EGRDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIVTRPAYAIEYDYIDPRQLYPTLES 366

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 367 KLVENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVT 426

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N     
Sbjct: 427 KGVDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIER 486

Query: 478 LKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           LK +++   +  +   TS+      +  + Y+ L  P  S   L  + P+       V+E
Sbjct: 487 LKKVIVKPSDRVNDLLTSLRTSPLKEPVSFYQLLKRPQLSYSALKFLDPNPID-DPEVVE 545

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y  +   E    +  E   IP D DY ++P LS E ++KL  ++P ++ Q
Sbjct: 546 QVEINVKYEGYIQKMFEEVAVFEKYENYEIPHDLDYDAVPNLSTEARDKLKKIRPRSIGQ 605

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A +I G+ P+ ++ L+IY+ +
Sbjct: 606 AMRIPGINPSDISNLIIYLDR 626


>gi|257452321|ref|ZP_05617620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_5R]
 gi|317058864|ref|ZP_07923349.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 3_1_5R]
 gi|313684540|gb|EFS21375.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 3_1_5R]
          Length = 630

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 283/628 (45%), Positives = 383/628 (60%), Gaps = 21/628 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+G GHAG EAA  AA+LG  TA+ T     IG MSCNP++GG  K HLVREID
Sbjct: 3   QEFDVIVVGAGHAGAEAALAAARLGKKTAIFTISLDNIGVMSCNPSLGGPAKSHLVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M+R I + ENL  IQG 
Sbjct: 63  ALGGEMGRNIDKTYIQIRVLNTKKGPAVRSLRAQADKIRYAKEMKRTIETCENLSAIQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E      I +++    R   ++L TGTFLRG+IHIG+     GRMG+  S  L 
Sbjct: 123 VSELLVEDGKAVGIKIREGVEYRAKRIILATGTFLRGLIHIGESHFSGGRMGELSSEDLP 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT-DK--ITNRQIE 239
            S +K   D  R KTGTP+R+D +TI +   E+Q  +  +++ FS  T DK     RQI 
Sbjct: 183 LSLLKHGLDLQRFKTGTPSRIDARTIDFSVLEEQPGETAKILKFSNRTSDKELKDRRQIS 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN E H  I  N + S +++G I+  GPRYCPSIEDK+ R+ ++  H +FLE EG
Sbjct: 243 CYIAHTNEEVHTEIKNNRERSPLFNGTIQGLGPRYCPSIEDKVYRYADKPQHHLFLEREG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ +Y  G+S++LP ++Q   I  I G E   I+R GYAIEYDYI P E+  +LE++ 
Sbjct: 303 YDTNEIYLGGLSSSLPVDVQENMIHKIHGFEHAQIMRYGYAIEYDYIPPSEIQYSLESRT 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEA AQGL+AGIN+ R  +  D I   R DSYIG +IDDL  KG
Sbjct: 363 IPNLFLAGQINGTSGYEEAGAQGLMAGINAVRSIDGKDPIVLDRADSYIGTLIDDLVLKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-QKRFAKYIQEYNFLRSLL 478
             EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E   QK   K     N + +L 
Sbjct: 423 TNEPYRMFTARSEYRLVLREDNADLRLSKIGYEVGLVSEEEYQKVETKRENVRNIIEALQ 482

Query: 479 KSLV-----LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           ++ V       ++ LS       +DG   + +E L  P+ + +++  +    + F     
Sbjct: 483 QNFVGPGNPRVNERLSEKGEEILKDGA--SLFEVLRRPEITYEDIEYMTEGTKTFDFTSY 540

Query: 534 E-----RLQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           +     ++++++ Y+ Y  R  +MIE K    EEKR IP+D DY SL  +  E KEKL  
Sbjct: 541 DEDTKYQVEVQTKYSGYIERSFKMIE-KHKSMEEKR-IPQDIDYDSLQNIPKEAKEKLKK 598

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           ++P N+ QAS+I G++PA + +LLIY+K
Sbjct: 599 IRPNNIGQASRISGVSPADIQVLLIYLK 626


>gi|268320268|ref|YP_003293924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Lactobacillus johnsonii FI9785]
 gi|262398643|emb|CAX67657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Lactobacillus johnsonii FI9785]
          Length = 632

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/618 (41%), Positives = 361/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 69  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQAVAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKLPEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 189 LEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG +T 
Sbjct: 249 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRHTK 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-FLRSLLKSLV 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +  + ++ K  +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKKVTI 488

Query: 483 LTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +  +       V E+++I  
Sbjct: 489 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGETLATDRYVKEQVEIAL 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 549 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 608

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 609 VNPADLAILTAYIQQGRI 626


>gi|86134803|ref|ZP_01053385.1| glucose inhibited division protein A [Polaribacter sp. MED152]
 gi|85821666|gb|EAQ42813.1| glucose inhibited division protein A [Polaribacter sp. MED152]
          Length = 625

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 270/623 (43%), Positives = 373/623 (59%), Gaps = 12/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +R+YDVIV+GGGHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG ++R
Sbjct: 3   LFSRTYDVIVVGGGHAGSEAAAAAANMGAHTLLITMNLQNIAQMSCNPAMGGIAKGQIIR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V D   IQF++LN  KGPA+  PR Q+DR  +    +  +   EN+D  
Sbjct: 63  EIDALGGYSGIVTDKTAIQFKMLNKSKGPAMWSPRAQSDRMQFAECWRTMLEQTENVDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   + N I  +       I   TV++T GTFL G+IHIG      GR G++ S 
Sbjct: 123 QDSVNGLVFDGNKIIGVKTALGLEINAKTVIITAGTFLNGLIHIGDKSFGGGRAGEAASR 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            +    +   F+ GR+KTGTP R+DG+++ + K  +Q  DE    FS++ T     +Q  
Sbjct: 183 GITEDLVAKGFEAGRMKTGTPPRVDGRSLDYSKMTEQPGDEITEKFSYLPTTTALKKQRS 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E H ++ E    S +++G I+S GPRYCPS+EDK+ RF  +  HQIF+EPEG
Sbjct: 243 CWLTYTNPEVHNLLREGFDRSPMFNGRIQSSGPRYCPSVEDKVDRFATKERHQIFVEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPE+IQ + IR + G E V  +R GYAIEYD+  P +L  +LETK 
Sbjct: 303 WSTIEMYVNGFSTSLPEDIQDKAIRAVAGFENVKFLRYGYAIEYDFFQPTQLKHSLETKL 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LF AGQINGTTGYEEAAAQGL+AG+N+A K    D     R ++YI V+IDDL +KG
Sbjct: 363 IENLFFAGQINGTTGYEEAAAQGLMAGVNAALKVQGKDPFTLKRDEAYIAVLIDDLITKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G +LG   + R  R  +  ++ + L   L+
Sbjct: 423 TEEPYRMFTSRAEYRTLLRQDNADLRLTPKGFELGLASKERMDRVLEKQRKTDLLIQFLE 482

Query: 480 SL---------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
                      +L +KNL+  + S K       A   L + DF      S   +      
Sbjct: 483 KTSVKKEEVNPILEAKNLALINQSMKL--FKIAARPQLDFSDFESVEKLSAFIEENDIDK 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE+ +I   Y+ Y  ++   A ++   E   IP  F+Y  L +LS E +EKL+ ++P 
Sbjct: 541 EIIEQAEIHLKYSGYINKEKNNADKLNRLENVKIPASFNYQKLQSLSFEAREKLTKIQPT 600

Query: 591 NLLQASKIEGMTPAALNLLLIYI 613
           ++ QAS+I G++P+ +++LL+Y+
Sbjct: 601 SISQASRISGVSPSDISVLLVYM 623


>gi|77410825|ref|ZP_00787182.1| glucose inhibited division protein A [Streptococcus agalactiae
           CJB111]
 gi|77163043|gb|EAO73997.1| glucose inhibited division protein A [Streptococcus agalactiae
           CJB111]
          Length = 604

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/598 (43%), Positives = 365/598 (61%), Gaps = 14/598 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L T     +  M CNP+IGG  KG +VREIDAL G MG+  D   IQ ++LN  
Sbjct: 1   MGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDALGGEMGKNIDKTYIQMKMLNTG 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QAD+ LY   M++ +  QENL + Q  +     E   +  +    N    
Sbjct: 61  KGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMIDEILVEDGKVVGVRTATNQKFS 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +VV+TTGT LRG I +G+LK  +G      S +L ++      + GR KTGTP R+  
Sbjct: 121 AKSVVITTGTALRGEIILGELKYSSGPNNSLASVTLADNLRDLGLEIGRFKTGTPPRVKA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMT---DKITNRQIECGITRTNLETHRIIMENIKHSAIY 263
            +I +++TE Q  DE+   FSFM+   D IT+ Q+ C +T TN  +H II +N+  + ++
Sbjct: 181 SSINYEETEIQPGDEQPNHFSFMSRDEDYITD-QVPCWLTYTNTLSHDIINQNLHRAPMF 239

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
           SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T+ VY  G+ST+LPE++Q   +
Sbjct: 240 SGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRHTEEVYVQGLSTSLPEDVQVDLL 299

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           R+I GLE   ++R GYAIEYD + P +L  TLETK I+GLF AGQ NGT+GYEEAA QGL
Sbjct: 300 RSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIAGLFTAGQTNGTSGYEEAAGQGL 359

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           VAGIN+A K      +   R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD
Sbjct: 360 VAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNAD 419

Query: 444 NRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSL-LKSLVLTSKNLSSTSISFKQD 498
            RLT IG ++G + E R    +KR  ++  E   L S+ LK +  T+K +    + FK  
Sbjct: 420 MRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSIKLKPVSETNKRIQ--ELGFKPL 477

Query: 499 GKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI 556
               TA EF+  P   +++   F  C D     S VIE L+ E  Y  Y  + + +  ++
Sbjct: 478 TDALTAKEFMRRPQITYAVATDFVGCTD-EPLDSKVIELLETEIKYEGYIKKALDQVAKM 536

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           K  E++ IP   D+  + +++ E ++K   + P  L QAS+I G+ PA +++L++Y++
Sbjct: 537 KRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQASRISGVNPADISILMVYLE 594


>gi|227889161|ref|ZP_04006966.1| glucose-inhibited division protein A [Lactobacillus johnsonii ATCC
           33200]
 gi|227850390|gb|EEJ60476.1| glucose-inhibited division protein A [Lactobacillus johnsonii ATCC
           33200]
          Length = 634

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/618 (41%), Positives = 361/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 11  YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 71  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQAVAD 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 131 ELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKLPEN 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 191 LEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSCYMT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG +T 
Sbjct: 251 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRHTK 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 311 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 371 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN-FLRSLLKSLV 482
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +  + ++ K  +
Sbjct: 431 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKKVTI 490

Query: 483 LTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +  +       V E+++I  
Sbjct: 491 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGETLATDRYVKEQVEIAL 550

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 551 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 610

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 611 VNPADLAILTAYIQQGRI 628


>gi|240276892|gb|EER40403.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus H143]
          Length = 659

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/638 (42%), Positives = 370/638 (57%), Gaps = 65/638 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QAYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G
Sbjct: 156 VGDIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++  
Sbjct: 216 EAATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C                                  C        RF ++  H 
Sbjct: 276 DDEDQLPC----------------------------------C--------RFKDKQRHM 293

Query: 293 IFLEPEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   D V+YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L
Sbjct: 294 IWLEPEGFEPDEVIYPNGISMTIPADAQLAVLRTVAGLENVRMLQAGYGVEYDYVDPRSL 353

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 354 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIM 413

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSR+EYRI+ R DNAD RLT  G ++G +G++R + F++   + 
Sbjct: 414 VDDLITKGVSEPYRMFTSRSEYRIATRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQI 473

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICP------- 523
             L++LL++    S   S        D   R+A++ L   D SI ++   I P       
Sbjct: 474 TELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSG 533

Query: 524 ---DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E 
Sbjct: 534 KAYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEE 593

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  L  ++P ++  A +IEGMTP A   LL+Y+++ T 
Sbjct: 594 RAALENVRPESIGMARRIEGMTPVAALKLLVYVRRTTA 631


>gi|283768648|ref|ZP_06341560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bulleidia extructa W1219]
 gi|283105040|gb|EFC06412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bulleidia extructa W1219]
          Length = 624

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/628 (41%), Positives = 371/628 (59%), Gaps = 32/628 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIG GHAG EA   AA+LG  TALIT    TIG M CNP++GG  KG + REIDAL
Sbjct: 4   YDIIVIGAGHAGIEAGLAAARLGKKTALITINQETIGKMPCNPSVGGPAKGIVTREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG VAD   +QF++LN  KGP VR  R Q+D+  Y   M+   L QENL VI+  V 
Sbjct: 64  GGQMGYVADKTALQFKMLNSAKGPGVRALRVQSDKLAYSSMMKEICLKQENLTVIESLVE 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK     + +QD S++    V++TTGT++ G   I       G   +  +N L  S
Sbjct: 124 RLIVEKQEARGVELQDGSVLLSRAVIMTTGTYMSGKNMISDDVKIGGPDLEPTTNQLSES 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKIT--NRQIECG 241
             +    T RLKTGTP R+   TI + KT+ +        FS +T  D +    +Q+ C 
Sbjct: 184 LRQVGVRTFRLKTGTPPRIRTSTIDFSKTKLEPGTPGFYHFSSLTKPDDVLPFEKQVSCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH II+ N+  S++YSG ++  GPRYCPSIEDK+VRF ++  H +FLEPE L+
Sbjct: 244 MTHTVPETHEIILNNLTKSSMYSGVVEGVGPRYCPSIEDKLVRFKDKERHLLFLEPESLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y  G S++LP+E+Q Q + T+PGLE   I++  YAIEYD ++P ++  + E+K I 
Sbjct: 304 LPTTYIQGFSSSLPKEVQFQMVHTLPGLENCEIMKYAYAIEYDALDPVQMKSSFESKVIK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QGL+AGIN+ RK ++ + I FSR  +YIGV++DDLT+KG  
Sbjct: 364 NLFTAGQINGTSGYEEAAGQGLLAGINAVRKLDEKEPIIFSRDQAYIGVLVDDLTTKGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNA+ RLT IG ++G I + R +          FLR+  +SL
Sbjct: 424 EPYRLLTSRAEYRLLLRHDNAEERLTGIGHQIGLISDERYE---------AFLRN--QSL 472

Query: 482 VLTSKNLSSTSISFKQDGKTRT-----AYEFLSY----------PDFSIQNLFSICPDAR 526
           +   K    TS+    D + +       Y+ LS+          P    ++LF +    +
Sbjct: 473 LALKKEELQTSLFSMNDDRVKQYLLNHGYDDLSFSMNGEDLVKRPRLQARDLFKL--QGK 530

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           +    + E++ I+  Y  Y  +   EA+ +K  + R++ +  DY  +P LS E ++KL  
Sbjct: 531 EIDDNIAEKIDIDIKYEGYIAKAKREAERLKTMDHRMLSETLDYDEIPNLSIEGRQKLKE 590

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            KP  L +AS+I G+ PA + +L +Y+K
Sbjct: 591 FKPETLGKASRISGVNPADIAVLSMYLK 618


>gi|257465888|ref|ZP_05630199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917044|ref|ZP_07913284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690919|gb|EFS27754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 630

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 283/628 (45%), Positives = 384/628 (61%), Gaps = 21/628 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+G GHAG EAA  AA+LG  TA+ T     IG MSCNP++GG  K HLVREID
Sbjct: 3   QEFDVIVVGAGHAGAEAALAAARLGKKTAIFTISLDNIGVMSCNPSLGGPAKSHLVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M+R I + ENL  IQG 
Sbjct: 63  ALGGEMGRNIDKTYIQIRVLNTKKGPAVRSLRAQADKIRYAKEMKRTIETCENLSAIQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E      I +++    R   ++L TGTFLRG+IHIG+     GRMG+  S  L 
Sbjct: 123 VSELLVEDGKAVGIKIREGVEYRAKRIILATGTFLRGLIHIGESHFSGGRMGELSSEDLP 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT-DK--ITNRQIE 239
            S +K   D  R KTGTP+R+D +TI +   E+Q  +  +++ FS  T DK     RQI 
Sbjct: 183 LSLLKHGLDLQRFKTGTPSRIDARTIDFSVLEEQPGETAKILKFSNRTSDKELKDRRQIS 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN E H  I  N + S +++G I+  GPRYCPSIEDK+ R+ ++  H +FLE EG
Sbjct: 243 CYIAHTNEEVHTEIKNNRERSPLFNGTIQGLGPRYCPSIEDKVYRYADKPQHHLFLEREG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ +Y  G+S++LP ++Q   I  I G E+  I+R GYAIEYDYI P E+  +LE++ 
Sbjct: 303 YDTNEIYLGGLSSSLPVDVQENMIHKIHGFEQARIMRYGYAIEYDYIPPSEIQYSLESRT 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEA AQGL+AGIN+ R  +  D I   R DSYIG +IDDL  KG
Sbjct: 363 IPNLFLAGQINGTSGYEEAGAQGLMAGINAVRSIDGKDPIILDRADSYIGTLIDDLVLKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-QKRFAKYIQEYNFLRSLL 478
             EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E   QK  AK       + +L 
Sbjct: 423 TNEPYRMFTARSEYRLVLREDNADLRLSKIGYEVGLVSEEEYQKVEAKRENVRKIIEALQ 482

Query: 479 KSLV-----LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           ++ V       ++ LS       +DG   + +E L  P+ + +++  +    + F     
Sbjct: 483 QNFVGPGNPRVNERLSEKGEQILKDGA--SLFEVLRRPEITYEDVEYMTEGTKTFDFTSY 540

Query: 534 E-----RLQIESSYAAYTGR--QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           +     ++++++ Y+ Y  R  +MIE K    EEKR IP+D DY SL  +  E KEKL  
Sbjct: 541 DEDTKYQVEVQTKYSGYIERSFKMIE-KHKSMEEKR-IPQDIDYDSLQNIPKEAKEKLKK 598

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           ++P N+ QAS+I G++PA + +LLIY+K
Sbjct: 599 IRPNNIGQASRISGVSPADIQVLLIYLK 626


>gi|148555755|ref|YP_001263337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas wittichii RW1]
 gi|205831558|sp|A5VA83|MNMG_SPHWW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148500945|gb|ABQ69199.1| glucose inhibited division protein A [Sphingomonas wittichii RW1]
          Length = 619

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 279/613 (45%), Positives = 380/613 (61%), Gaps = 2/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAAA AA+ GA TAL++ +   IG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 4   SFDVIVVGGGHAGCEAAAAAARTGARTALVSMRRDMIGAMSCNPAIGGLGKGHLVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-- 122
            DGL+ R AD A I +R+LN  KG AV+GPR QADR+LY+ A+   +    +L++++G  
Sbjct: 64  CDGLIARAADRAAIHYRMLNSSKGAAVQGPRVQADRKLYKAAIHDLLAELPSLEIVEGSA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E    +      S +V+ D   ++   VVL TGTFL   +H G      GR+G++ +  L
Sbjct: 124 ERLLLDDVSRGTSGLVLADGRELKAGAVVLATGTFLNARLHFGMDCRTGGRVGEAAAVGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                  D    RLKTGTP RLDG+TI W + ++Q +D     FS +T      Q+ C I
Sbjct: 184 AEQLRALDLPIARLKTGTPPRLDGRTIDWARLDRQPSDGEGWTFSALTPHRLVPQLACAI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRTN  TH +I   +  S ++SG I   GPRYCPSIEDK+ RFG+R+GHQIFLEPEGL+ 
Sbjct: 244 TRTNQRTHDVIRAGLDRSPLFSGAITGVGPRYCPSIEDKVHRFGDRDGHQIFLEPEGLDD 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNG+ST+LPE++Q   +RT+PGLE+V I++PGYA+EYDYI+P+ L   L  + + G
Sbjct: 304 PTVYPNGVSTSLPEDVQLAMLRTVPGLERVEILQPGYAVEYDYIDPRALTAGLALRALPG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL AG+N+A  +     I F R  SYIGVMIDDLT +GV E
Sbjct: 364 LFCAGQINGTTGYEEAAAQGLAAGMNAAAFAAGRPEIHFDRATSYIGVMIDDLTLQGVSE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM T+RAEYR+ LR DNA  RLT      G I   R+    +       +   L   +
Sbjct: 424 PYRMLTARAEYRLRLRADNAGTRLTSWADAHGAISAARRMFHVEREARRIAMADCLDRRI 483

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
             S  L +   +   D   R+  E+L +P+     L  + P+       V   +  +  Y
Sbjct: 484 AGSAELIAAGAAVAADHARRSLTEWLRFPEVGDAELTVLAPELVDVPEDVRAEVIQDGRY 543

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E   ++ +E+  +    DY ++  LSNE+ E+L+  +P +L  A ++ G+T
Sbjct: 544 APYLARQDQEIARLRADERIGLAVIVDYGAIAGLSNEMVERLNAARPADLAAAGRVRGVT 603

Query: 603 PAALNLLLIYIKK 615
           PAAL  ++++ ++
Sbjct: 604 PAALAAIMVHARR 616


>gi|171920380|ref|ZP_02931708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701825|ref|ZP_02971495.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902814|gb|EDT49103.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701112|gb|EDU19394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 614

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 366/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NII  +++ D  +I  + V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIIKGVILSDQKIIYANYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F   RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFKLIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLESCKILKYAYAIEYDAIDPTQLYPSLESKLVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +   + + + +Y+     ++ +L  L
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLL---KSEVYDQYLNNLKQIKEILNWL 478

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T+       + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 479 KTTTVG-QIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHTIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|116630434|ref|YP_819587.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri ATCC 33323]
 gi|116096016|gb|ABJ61168.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus gasseri ATCC 33323]
          Length = 637

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/618 (41%), Positives = 359/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 15  YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 75  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQAVAD 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 135 ELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKLPEN 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 195 LEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSCYMT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG NT 
Sbjct: 255 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRNTK 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 315 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 375 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K + +
Sbjct: 435 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKKVTI 494

Query: 484 -TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +          V E+++I  
Sbjct: 495 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVEIAL 554

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 555 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 614

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 615 VNPADLAILTAYIQQGRI 632


>gi|183508643|ref|ZP_02958143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182676109|gb|EDT88014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 614

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 367/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQINLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  ++++D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILRDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKSVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +   + + + +Y+     ++ +L  L
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLL---KPEVYDQYLNNLRQIKEILSWL 478

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T+       + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 479 KTTTVG-QIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|238853334|ref|ZP_04643714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 202-4]
 gi|205831544|sp|Q040F4|MNMG_LACGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238834022|gb|EEQ26279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 202-4]
          Length = 631

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/618 (41%), Positives = 359/618 (58%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 69  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQAVAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKLPEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C +T
Sbjct: 189 LEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG NT 
Sbjct: 249 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRNTK 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K + +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKKVTI 488

Query: 484 -TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +          V E+++I  
Sbjct: 489 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVEIAL 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G
Sbjct: 549 KYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISG 608

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA L +L  YI++  +
Sbjct: 609 VNPADLAILTAYIQQGRI 626


>gi|325859685|ref|ZP_08172815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola CRIS 18C-A]
 gi|325482611|gb|EGC85614.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola CRIS 18C-A]
          Length = 623

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/622 (40%), Positives = 365/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q +  
Sbjct: 65  GGYMGMVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   +    S
Sbjct: 125 ELLTENGKVLGIKTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHHFTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C    T
Sbjct: 185 ITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCWTCNT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ +
Sbjct: 245 NEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTDTNEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF 
Sbjct: 305 YLNGFSSSMPWEIQLEAIHRIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKVIDGLFF 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGTVAGINAALLCAGKAPFVMNRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    ++G     R+ R+  ++Q+   +  +      TS
Sbjct: 425 MFTSRAEYRILLRQDDADARLTEQAYEIGIA---RRDRYEWWLQKKANINRITDFCNNTS 481

Query: 486 KNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
                 +   +Q G +         + ++ P  + +NL ++ P  ++           + 
Sbjct: 482 VKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFKNLSAVVPALKEAIEASPNRQEEIA 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  R+ + A+++   E   I   FDY  L  LS E ++KL  ++P  L 
Sbjct: 542 EAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYGRLHDLSTECRQKLERIQPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLMGR 623


>gi|320581620|gb|EFW95840.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia angusta DL-1]
          Length = 797

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/606 (41%), Positives = 362/606 (59%), Gaps = 40/606 (6%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAAA +A+ G  T L+T   S I                   E+DALDG+  RV D +GI
Sbjct: 49  EAAAGSARTGVFTTLVTPDISKI-------------------EVDALDGIAPRVVDMSGI 89

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF----------- 127
           QF+VLN  +G AV G R Q DR+LY   MQ+ +    NL+++Q  V              
Sbjct: 90  QFKVLNRSRGAAVWGHRAQIDRKLYLTEMQKLLKDYPNLNILQARVEDLVVVPFTNESGD 149

Query: 128 -NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            N+    I  +V+ D  ++RC  VV+TTGTFL   IH+G    PAGR+G+ PS  L  +F
Sbjct: 150 KNSYDAKICGVVLSDGEILRCEKVVITTGTFLSAEIHLGLDTWPAGRIGEDPSYGLSKTF 209

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECGITR 244
            +  F  GRLKTGTP R+  KT+ + K  ++  D    P SF+ +  KI + Q+ C  T 
Sbjct: 210 REAGFRLGRLKTGTPPRISAKTVDYSKVAEEPGDNPPEPMSFLNEIPKIED-QLLCYSTY 268

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H++I+ N+  S      +K  GPRYCPSIE K++RF ++  H+++LEPEGL+TDV
Sbjct: 269 TTPAMHKLILSNLDKSVHIRETVK--GPRYCPSIESKLIRFSDKTRHRVWLEPEGLDTDV 326

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIS  +P EIQ   ++ I GLE+V +++PGY +EYDYI+P+ L  TLETK ISGL+
Sbjct: 327 MYPNGISCTMPPEIQEAMLKNIIGLEEVKMLQPGYGVEYDYIDPRGLKRTLETKTISGLY 386

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQG+VAGIN+         +   R+D YIG++IDDL +KGV EPY
Sbjct: 387 LAGQINGTTGYEEAAAQGIVAGINAGLGFQNKKPLILDRSDGYIGILIDDLITKGVEEPY 446

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+E+RIS+R DNAD RLTP G +LGC+  +R   F +  + Y      LK   L 
Sbjct: 447 RMFTSRSEFRISVRADNADLRLTPKGHELGCVSAQRWDHFTEENKLYQESLDFLKDYKLP 506

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIERLQIES 540
           S+  +     +  + D   ++A++ L Y + S+ +L  +  +         + +++ I  
Sbjct: 507 SQEWAKLVPRLKIRTDSSYKSAFDLLRYENMSLDDLIPVLHNKSLEALPRKIKQKIDIHG 566

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y GR+  + +  K +E  ++P +FDY+S+ +LS+E +  L+  KP  + QA +I+G
Sbjct: 567 DYQGYLGRENAQIRAFKSDENLVLPTNFDYTSMSSLSSEARALLNESKPETIGQARRIQG 626

Query: 601 MTPAAL 606
           +TPAA+
Sbjct: 627 ITPAAI 632


>gi|167999482|ref|XP_001752446.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696346|gb|EDQ82685.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 682

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/623 (42%), Positives = 376/623 (60%), Gaps = 16/623 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAGCEAA  AA++GA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 23  DERFDVIVVGGGHAGCEAALAAARMGAQTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEV 82

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +GR+AD   +Q RVLN  KGPAV   R Q D+  Y L M++ I + +NL + + 
Sbjct: 83  DALGGEIGRMADRCYLQKRVLNRSKGPAVWALRAQTDKREYALEMKKIIENTKNLQIREA 142

Query: 123 EV----AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V     G N +   + +    D       +VVLTTGTF+ G I +G+  + AGR G+S 
Sbjct: 143 MVTEILVGNNDDVTGVRTFFGVD---FIAPSVVLTTGTFMNGKIWVGRSSMSAGRAGESA 199

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD---KITN 235
           S  L  +   F F+T RLKTGTPAR+D +++ +   E Q  DE +  FS   D    I  
Sbjct: 200 SEGLTENLQNFGFETDRLKTGTPARVDVRSVDFSVMEAQPGDEDVRWFS--NDPLVHIER 257

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFL
Sbjct: 258 EQMSCYLTRTTPATHKMINDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKETHQIFL 317

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG +   +Y  G ST LPE +Q   +RT+PGLEK  ++RP YA+EYDY+   +   +L
Sbjct: 318 EPEGRDVPELYVQGFSTGLPERLQLALLRTLPGLEKCTMLRPAYAVEYDYLPAHQCHRSL 377

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
            TKK+ GLF +GQINGTTGYEEAAAQGLVAG+N+A +++    +   R  S+IG +IDDL
Sbjct: 378 MTKKLEGLFFSGQINGTTGYEEAAAQGLVAGVNAALRADGKSLLVLERESSFIGTLIDDL 437

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFL 474
            +K + EPYRM TSR+E+R+ LR DNAD+RLTP+G  LG + +R    F  K I+  +  
Sbjct: 438 VTKDLREPYRMLTSRSEHRLLLRADNADSRLTPLGRDLGLVDDRMWNLFQDKQIRIASEK 497

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L  + V  ++ ++         G  +T      L  P      L +      + +S+ 
Sbjct: 498 NRLQTTKVTPNEKIAEEVAQVSGQGIKETVALATILKRPHVHYSVLENHGYGNSELTSME 557

Query: 533 IERLQIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            E ++I+  YA +  RQ  +  +++  ++ + IP D DY+S+  +S E +EKL+ ++P N
Sbjct: 558 KECVEIDIKYAGFIMRQQGQLEQQMVHKQHKAIPDDLDYNSISTISMEAREKLTKIRPQN 617

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           + QAS+I G+ PA +  LLI+++
Sbjct: 618 IGQASRIGGVNPADITALLIHLE 640


>gi|257463656|ref|ZP_05628047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D12]
 gi|317061206|ref|ZP_07925691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. D12]
 gi|313686882|gb|EFS23717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. D12]
          Length = 630

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/629 (43%), Positives = 383/629 (60%), Gaps = 23/629 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+G GHAG EAA  AA+LG  TA+ T     IG MSCNP++GG  K HLVREID
Sbjct: 3   QEFDVIVVGAGHAGAEAALAAARLGKKTAIFTISLDNIGVMSCNPSLGGPAKSHLVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M+R I S ENL  IQG 
Sbjct: 63  ALGGEMGRNIDKTYIQIRVLNTKKGPAVRSLRAQADKIAYAKEMKRTIESCENLSAIQGM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E      I +++    R   ++L TGTFLRG+IHIG+     GRMG+  S  L 
Sbjct: 123 VSELLVENGKAVGIKIREGVEYRAKRIILATGTFLRGLIHIGESHFSGGRMGELSSEELP 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT---DKITNRQIE 239
            S +K   D  R KTGTP+R+D ++I +   E+Q  ++ R++ FS  T   D    +QI 
Sbjct: 183 LSLLKHGLDLQRFKTGTPSRIDARSIDFSVLEEQPGEKSRILKFSNRTKEEDLKDRKQIS 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H  I +N + S +++G I+  GPRYCPSIEDK+ R+ ++  H +FLE EG
Sbjct: 243 CYIAHTNEAVHEEIKKNRERSPLFNGTIQGLGPRYCPSIEDKVYRYADKQQHHLFLEREG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y  G+S++LP ++Q   I  I G E   I+R GYAIEYDYI P E+  +LE++ 
Sbjct: 303 YETNEIYLGGLSSSLPVDVQENMIHQIRGFEHAQIMRYGYAIEYDYIPPSEIQYSLESRS 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEA AQGL+AGIN+ R  +  + I   R DSYIG +IDDL  KG
Sbjct: 363 IPNLFLAGQINGTSGYEEAGAQGLIAGINAVRSIDGKEAIVLDRADSYIGTLIDDLVLKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E   + + K  Q+   ++ +++
Sbjct: 423 TNEPYRMFTARSEYRLLLREDNADLRLSKIGYEVGLVSE---EEYQKVEQKRENVKKIIE 479

Query: 480 SLVL---------TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
           +L            ++ L        +DG   + +E L  P+ + +++  +  + + F+ 
Sbjct: 480 ALQQNFVGPGNPRVNERLHEKGEQILKDGA--SLFEVLRRPEINYEDIEYMTEETKVFNF 537

Query: 531 LVIE-----RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              +     ++++++ Y+ Y  R +   ++ K  E++ IP+D DY SL  +  E KEKL 
Sbjct: 538 GAYDEDTKYQVEVQTKYSGYIERSLKMIEKHKSMEQKRIPEDMDYDSLQNIPKEAKEKLK 597

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +KP N+ QAS+I G++PA + +LLIY+K
Sbjct: 598 KIKPSNIGQASRISGVSPADIQVLLIYLK 626


>gi|19112323|ref|NP_595531.1| mitochondrial tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme [Schizosaccharomyces pombe 972h-]
 gi|3915337|sp|O13670|MTO1_SCHPO RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|2257569|dbj|BAA21461.1| HYPOTHETICAL 75.4KD PROTEIN IN HAP2-ADE 5,6 INTERGENIC REGION
           [Schizosaccharomyces pombe]
 gi|3417432|emb|CAA20319.1| mitochondrial tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme [Schizosaccharomyces pombe]
          Length = 666

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/631 (43%), Positives = 383/631 (60%), Gaps = 17/631 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           NR  +V+VIGGGHAG EAAA A++LGA T L+T     IG MSCNPA GG+GKG L+REI
Sbjct: 14  NRRKNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGIGKGTLMREI 73

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVIQ 121
           DAL G++  V D + IQF +LN   GPAV  PR Q DR +++  MQ+ I + ++NL V +
Sbjct: 74  DALGGVVSGVCDESAIQFHMLNRSNGPAVWSPRAQMDRSVFKKNMQKTISTYRKNLQVRE 133

Query: 122 GEVAGFN--TE---KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           G     N  TE   K +  SIV++D + I  S +V+TTGTFL G I++G  ++ AGR G+
Sbjct: 134 GAAVSINVLTEDDGKQVCDSIVLEDGTAIPASCIVITTGTFLGGQINVGLTQLAAGRYGE 193

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK---- 232
            PS  L        F  GRLKTGTP RL     I   TE Q  DE    FSF+  +    
Sbjct: 194 RPSLPLSKCLSNLGFKMGRLKTGTPPRLSSPINISKMTE-QTGDEIPETFSFLNLERDFS 252

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSA-IYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
               Q  C  T T   TH I+ +N+  +  + +GDI S  PRYCPS+E K+ RF  +  H
Sbjct: 253 PALPQRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILS--PRYCPSLEAKVTRFPHKARH 310

Query: 292 QIFLEPEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
            I+LEPEGL+ +   YPNG+S ++PEEIQH  IR+IPGLE  NI+RP Y + YDY+ P +
Sbjct: 311 LIWLEPEGLDPNSWWYPNGLSNSMPEEIQHNIIRSIPGLENCNIVRPAYGVMYDYVIPTQ 370

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETKKI GL+LAGQINGTTGYEEAAAQG++AG+N+   +   + +   R  + +GV
Sbjct: 371 LKATLETKKIQGLYLAGQINGTTGYEEAAAQGILAGLNAGLSALGREPVDIPRNTALLGV 430

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-RQKRFAKYIQ 469
           M+DDL +KGV EPYR+FTSR+EYR++ R DNAD RLTP+   +G + ++   + F +   
Sbjct: 431 MVDDLITKGVKEPYRVFTSRSEYRLTTRADNADLRLTPLAQSIGLLDDQTHWESFQRTKS 490

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
             +F   + K  +L+ +  S   +    DGK R+A++ LS+ +  +  + S  P  +   
Sbjct: 491 LLDFSNKIAKEFILSPQQWSKLGMPIPNDGKYRSAWDLLSFTNLDLFCVISCIPKLKDIP 550

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKF-EEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             V++RL IE  Y  Y  RQ  + K++   +E  +IP DFD+ +L ++S E    L  ++
Sbjct: 551 KRVLQRLIIEGKYTYYIKRQGTQNKQLNCRDESTVIPSDFDFDTLHSVSAEELMLLKTIR 610

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P  + Q  +I+G+ P  +  LL +   N  K
Sbjct: 611 PATIGQLKRIQGIKPGTIIRLLRHTYYNPAK 641


>gi|293368669|ref|ZP_06615276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
 gi|292636311|gb|EFF54796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
          Length = 628

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/623 (43%), Positives = 376/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK--RFAKYIQEY--NFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   E R +  R  K   E   +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARNYSMK 484

Query: 481 LVLTSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L    + S +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALEKIGTTSLRQGCKL---IEILNRPQVTIENIAEYVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKIN 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|160916053|ref|ZP_02078260.1| hypothetical protein EUBDOL_02080 [Eubacterium dolichum DSM 3991]
 gi|158431777|gb|EDP10066.1| hypothetical protein EUBDOL_02080 [Eubacterium dolichum DSM 3991]
          Length = 619

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/620 (40%), Positives = 367/620 (59%), Gaps = 11/620 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A++   T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARMKKKTLLYSMNIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ  +LS ENL+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTNKGPGVQCLRVQSDKLAYKKYMQDVVLSCENLEVREMCVEK 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  ++ +D        V++T+GT++   I +G    P+G   +  +N+L  S 
Sbjct: 123 VLAENGKVKGVLQKDGHEEYSQAVIVTSGTYMSSCILVGHTSTPSGPDQEPTTNALSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGITR 244
                 T RLKTGTPAR+   +I + KTE Q   +  + FS  T  I   ++Q  C +T 
Sbjct: 183 RDLGITTFRLKTGTPARVKTSSIDFSKTEVQPGSDAFLAFSTETKSIRPFDKQALCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE    D 
Sbjct: 243 TNAKTHQIIRDNLDKSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESEQLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++ GLE   I +  YAIEYD I+P +  PTLE K +  L+
Sbjct: 303 TYIQGFSTSMPHDVQEDMLHSLAGLEHCEIEKYAYAIEYDAIDPLQCKPTLENKLVENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+  K +    +   R ++YIGV+IDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAGQGLMAGINACLKLDHKAPLILHRDEAYIGVLIDDLVTKGTQEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL   G +LG I E R  R+ + +++    ++ L+++  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADQRLMRYGHELGLISEERYARYKQKLKDIEDTKAYLETVRFT 482

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K  S  ++  K +G        +A E L  P+ ++  L       RK  + V  +L+I+
Sbjct: 483 PK--SEINMFLKANGYDELKEGVSARELLKRPNVTMYMLMPYLD--RKVDAEVSRQLEID 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +AK ++  +  ++P D  Y  +  LS E ++KL+ + P  + QAS+I 
Sbjct: 539 IKYEGYILKAKRDAKHLRDMDNVVLPTDICYDEVANLSLEARQKLAKVMPLTMGQASRIS 598

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+ PA + +L +Y+++   K
Sbjct: 599 GVNPADIAVLAVYLEQRKRK 618


>gi|256819913|ref|YP_003141192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga ochracea DSM 7271]
 gi|256581496|gb|ACU92631.1| glucose inhibited division protein A [Capnocytophaga ochracea DSM
           7271]
          Length = 623

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 274/626 (43%), Positives = 379/626 (60%), Gaps = 14/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGASTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKDKVVGVRTSLGITIKAKSVVLTNGTFLNGVMHIGMKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF  + +    Q +
Sbjct: 181 GITECLVQHGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEHPQKFSFSAETQPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDHHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AG+N+  K  +       R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGVNAVLKIRERAPFVLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+G ++G + E R + +    ++ +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADRRLTPLGYEIGTVSEARYRAWEAKERKVSAFITYIK 480

Query: 480 SLVLTSKNLSS-----TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLV 532
            L +T + ++       S   KQ  K +   + LS PD ++ +  +I   A   K + L 
Sbjct: 481 ELSVTPEEVNPILEKYESSPMKQGDKFQ---KVLSRPDVTLADFEAIDRIAEYIKNNELT 537

Query: 533 IER---LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            E     ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL  ++P
Sbjct: 538 EEEKTCAEVEVKYAGYIEKERNNADKLNRLESVRIPDNFDYDKIVSLSFEGREKLKKIRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++PA +++LLIY+ +
Sbjct: 598 VTLSQASRISGVSPADISILLIYMGR 623


>gi|299145227|ref|ZP_07038295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_23]
 gi|298515718|gb|EFI39599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_23]
          Length = 628

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/623 (43%), Positives = 375/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLTTGTFL G++H+G  K+P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTAWGVTFKAKCIVLTTGTFLNGLMHVGHHKLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGETFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK--RFAKYIQEY--NFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   E R +  R  K   E   +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRSKKEAVEQIISFARNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALEKIGTTPLRQGCKL---IEILNRPQVTIENIAEYVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|197294686|ref|YP_001799227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Phytoplasma australiense]
 gi|171854013|emb|CAM11978.1| Glucose inhibited division protein A [Candidatus Phytoplasma
           australiense]
          Length = 614

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/616 (41%), Positives = 369/616 (59%), Gaps = 15/616 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IV+G GHAG EAA + AK    T LI+     I S+ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDSIVVGAGHAGVEAALILAK-KHQTLLISGSLKKIASLHCNPSIGGPAKGVVVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG+ AD A IQ ++LN  KGPAVR  R Q D+  Y   + + + +  NLD+++G V 
Sbjct: 62  GGVMGKAADLAQIQMKMLNFSKGPAVRALRAQIDKIQYPKIILKMLQTAPNLDLLEGLVN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N I  + + D   I   TV++TTGT+L   I IG+ K  +G  G   +  +   
Sbjct: 122 HLLIKNNQIQGVCLLDGRKIYAKTVIITTGTYLSSQILIGETKTASGPNGTPTTYGISQQ 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
                F+  RLKTGTP R+   TI + +T+ Q  D  L  FSF +D K    Q  C +T 
Sbjct: 182 LKDLGFEIIRLKTGTPPRIKKATIDYAQTKIQLGDTDLQTFSFDSDIKKLGSQEACFLTH 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I +++  SA+Y G IK  GPRYCPSIEDK+VRF ++  HQIF+EPE ++ D 
Sbjct: 242 TNEKTHQVIQKHLNKSAMYGGYIKGTGPRYCPSIEDKVVRFFDKKSHQIFIEPESVSLDE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ IQH+ ++TIPGL+   I + GYAIEYD  NP +L   LETKKI+ LF
Sbjct: 302 MYLQGLSTSMPQNIQHEILKTIPGLQNAEIAKYGYAIEYDAFNPSQLKHNLETKKINNLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPY
Sbjct: 362 FAGQMNGTSGYEEAACQGLMAGINASLKLQNKSPFVLKRNEAYIGVLIDDLITKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL       G I  +  + F K  +    +  + ++  + 
Sbjct: 422 RLLTSRAEFRLLLRHDNADLRLKEYSNHFGLIDAKNYEAFKKKKESLQLILKMSQNHEIL 481

Query: 485 S--KNLSSTSISFKQDGKTRTAYEFLSYPDF---SIQNLFSICPDARKFSSLVIERLQIE 539
           S  KNL     +        T ++ L  P+F   ++Q+   I  D + +     E+ +I+
Sbjct: 482 SEEKNLDYLKTTLT---GKTTLFQLLKRPEFNYQTLQHFLKIKADQKTY-----EQAEIQ 533

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   EA+++   E++ IP+  +YS +  LS E +EKL+++KP  L QAS+I 
Sbjct: 534 IKYEGYIAKAKKEAEKLLKLEQKKIPEKINYSEIKNLSKEAQEKLTLIKPETLGQASRIL 593

Query: 600 GMTPAALNLLLIYIKK 615
           G+    +++LLIY+ K
Sbjct: 594 GVNQVDISILLIYLGK 609


>gi|315225301|ref|ZP_07867118.1| glucose inhibited division protein A [Capnocytophaga ochracea
           F0287]
 gi|314944984|gb|EFS97016.1| glucose inhibited division protein A [Capnocytophaga ochracea
           F0287]
          Length = 623

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/626 (43%), Positives = 380/626 (60%), Gaps = 14/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGASTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKDKVVGVRTSLGITIKAKSVVLTNGTFLNGVMHIGLKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE+   FSF  + +    Q +
Sbjct: 181 GITECLVQHGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEQPQKFSFSAETQPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDHHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AG+N+  K  +       R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGVNAVLKIRERAPFVLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+G ++G + E R + +    ++ +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADRRLTPLGYEIGTVSEARYRAWEAKERKVSGFITYIK 480

Query: 480 SLVLTSKNLSS-----TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLV 532
            L +T + ++       S   +Q  K +   + LS PD ++ +  +I   A   K + L 
Sbjct: 481 ELSVTPEEVNPILEKYESSPMRQGDKLQ---KVLSRPDVTLADFETIDRIAEYIKKNELT 537

Query: 533 IER---LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            E     ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL  ++P
Sbjct: 538 EEEKTCAEVEVKYAGYIEKERNNADKLNRLESMRIPDNFDYDKIVSLSFEGREKLKKIRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++PA +++LLIY+ +
Sbjct: 598 VTLSQASRISGVSPADISILLIYMGR 623


>gi|294101019|ref|YP_003552877.1| glucose inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
 gi|293615999|gb|ADE56153.1| glucose inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
          Length = 632

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/619 (42%), Positives = 353/619 (57%), Gaps = 6/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGHAGCEA+  AA++GA T ++         M CNP+IGG  KGHLVR
Sbjct: 1   MEQKKYDVIVVGGGHAGCEASLAAARMGARTLMLNLYLDNTALMPCNPSIGGPAKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +AL G   R AD + +  R LN  KGPAV+  R Q D   Y       I +  NL+V 
Sbjct: 61  EGNALGGEQARAADYSTMLVRWLNTSKGPAVQALRAQCDLRDYHDHFIWTIETTPNLEVH 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   I  +  +         V+LTTGT+LRG +HIG L   +G MG  PS 
Sbjct: 121 QDIVTDLWIENGSIRGVKTKYGFTYEAGAVILTTGTYLRGQVHIGLLNYSSGPMGQVPST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S ++   + GR++T T  RL   TI      +Q + E  + F    +K T     C
Sbjct: 181 ELSRSLLESGIEMGRMRTDTTPRLHIDTIDTSSLIEQKSAEEPLCFDLWGEKKTYTGYSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRTN   H II EN++ S +++G +   GPRYCPSIEDKI+RF +++ H IFLEP   
Sbjct: 241 YLTRTNSYLHNIIRENLERSPLWTGRMSGLGPRYCPSIEDKIIRFPDKDSHLIFLEPVSR 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VY    ST+LP +IQ + +  +PG EK  I R GYAIEYDY+ P +L P+LETK I
Sbjct: 301 KNKEVYVQNFSTSLPYDIQVEIVHALPGCEKAQITRAGYAIEYDYVIPTQLAPSLETKNI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGT+GYEEAAAQGL+AG+N+   + K   +   R+D+YIGV+IDDL +KG 
Sbjct: 361 RGLFCAGQINGTSGYEEAAAQGLIAGMNAVLYTRKEAPVVLKRSDAYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRS 476
            EPYRM TSR EYR+ LR DNAD RL PIG ++G I + +    ++++A    E   L +
Sbjct: 421 NEPYRMLTSRCEYRLLLRFDNADRRLAPIGRRMGLIDDVKWQILREKWAAVDHEKERLSN 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIER 535
           L  +      +    + S   +   R A + L  P+ +   +    P   R  +    + 
Sbjct: 481 LRINPSEEVNDWLVRAGSSPLEESVR-AIDLLCRPEVTYGAMRPFLPSIERPLTDEEAQS 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L IE  YA Y  RQ  +   +   EK  IP+DF Y  +P L +E ++KL  ++P NL QA
Sbjct: 540 LAIEVKYAGYIERQQRQVIRLSKGEKVYIPEDFSYDEVPGLLSESRQKLEKIRPQNLAQA 599

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+TPA + LL +Y++
Sbjct: 600 SRISGVTPADIQLLSVYLE 618


>gi|309791316|ref|ZP_07685839.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oscillochloris trichoides DG6]
 gi|308226626|gb|EFO80331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oscillochloris trichoides DG6]
          Length = 677

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/649 (41%), Positives = 367/649 (56%), Gaps = 41/649 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAGCEAA  AA++G  T L+T     IG M CNP+IGG  KGHLVREIDAL
Sbjct: 33  YDIIVVGAGHAGCEAANAAARMGCRTLLLTIDLDKIGYMPCNPSIGGPAKGHLVREIDAL 92

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM RV D + IQ RVLN  KGPAV+  R QAD+  Y   M+  +    NLDV Q  V 
Sbjct: 93  GGLMARVTDQSAIQIRVLNESKGPAVQSLRAQADKRHYAQVMKETLEQVPNLDVRQAMVE 152

Query: 126 GFNTEKNIISSIVMQDNSMIRCST--------VVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                   + S +      ++  T        +VLT GTFLRG +  G+   PAGR G++
Sbjct: 153 QIRMLAAEVDSDLTPYAFQVQTHTGYTYQARALVLTVGTFLRGRVITGEATWPAGRAGEA 212

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-----------FADERLIPF 226
           P+ +L  +     F   RLKTGTP R+   +I + +T+ Q           +  +  +P 
Sbjct: 213 PAVALGENLAALGFPLVRLKTGTPPRVHAASIDFSQTDIQQGSRVPVAFGHYGPQERLPN 272

Query: 227 SFMTDKIT----------NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            F                  Q+ C +  T  + H II +N+  + ++SG I   GPRYCP
Sbjct: 273 PFTGPPCPYFPNPQRDGWRPQLPCYLVHTTPQFHAIIRDNLHRAPLFSGVIAGVGPRYCP 332

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKIVRF +++ H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L    ++R
Sbjct: 333 SIEDKIVRFADKDRHGLFLEPEGWTTSEVYVQGCNTSLPEDVQWAMLRSIPALRNAELMR 392

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
            GYAIEYD +   E+   L+ ++++GLFLAGQ+NGTTGYEEAAAQGL+AGIN+ R   + 
Sbjct: 393 IGYAIEYDAVASGEIGADLQARRMAGLFLAGQVNGTTGYEEAAAQGLIAGINAVRYVRRQ 452

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
             +   R  +YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD RLTP+  +LG +
Sbjct: 453 PAVILGRDQAYIGVLIDDLVTKEITEPYRMFTSRAEHRLLLRGDNADLRLTPLAYELGLV 512

Query: 457 GERR-----QKRFAKYIQEYNFL--RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G  R     QKR A   Q Y  L  + L  +L     N + T +      +  +  + L+
Sbjct: 513 GAERLAAVEQKREA-VAQLYGQLAGQRLFPTLAF---NTALTEVGVDPLSQPMSVIDLLA 568

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
            P      L ++  D     + VIE+L+I + Y  Y  RQ  E   ++  E R IP   D
Sbjct: 569 RPHVKYPQLQALL-DLPVADAGVIEQLEISAKYGGYIERQQREVDRLRKMESRRIPATLD 627

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           Y+SLP L NE ++ L   +P  L QA ++ G+TPA + +LL  +++  V
Sbjct: 628 YTSLPGLRNEARQVLLRFRPATLGQAGRLAGITPADVTILLFALERQGV 676


>gi|119331162|ref|NP_001073232.1| protein MTO1 homolog, mitochondrial [Gallus gallus]
 gi|53136448|emb|CAG32553.1| hypothetical protein RCJMB04_29e2 [Gallus gallus]
          Length = 646

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/609 (42%), Positives = 372/609 (61%), Gaps = 38/609 (6%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL GR+ D AG+ ++VLN  KGPAV G R Q DR  Y
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCGRICDVAGVHYKVLNRSKGPAVWGLRAQIDRRRY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           R  +Q+EILS   L V +  V           +  K  ++ +V+ D S +   +V+LTTG
Sbjct: 61  RDGVQKEILSTPLLTVREASVEDLLLTEPETNHPGKCQVTGVVLGDGSTVSAGSVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRGVI +G    PAGR+GD P+  L  +  K  F  GRLKTGTP RL   TI +   E
Sbjct: 121 TFLRGVILMGLETHPAGRLGDQPAVWLAQTLEKLGFTVGRLKTGTPPRLAKDTINFSGLE 180

Query: 216 KQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           ++  D   +PFSF++  +  +   Q+ C +T TNL+  +I+++N+ H   +  +     P
Sbjct: 181 ERVPDNPPVPFSFLSKAVWIKPEDQLLCYLTHTNLKAQQIVLDNL-HLNDHVRETNEGPP 239

Query: 273 -----------RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
                       YCPS E K++RF  R  HQ++LEPEGL +DV+YP G+S  LP E+Q Q
Sbjct: 240 VRMWPHLRLLKAYCPSFESKVLRFPNRE-HQVWLEPEGLESDVIYPQGLSMTLPPELQEQ 298

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            IR+I GLEK  I++PGY ++YD+++P++L  +LE++ +  LF AGQINGTTGYEEAAAQ
Sbjct: 299 VIRSIRGLEKARILQPGYGVQYDFLDPRQLTASLESRLVQRLFFAGQINGTTGYEEAAAQ 358

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G++AGIN+  +         SRT+ Y+GV+IDDLT+ G  EPYRMFTSR E+R+SLRPDN
Sbjct: 359 GVIAGINACLRVQGKPPFIVSRTEGYVGVLIDDLTTLGTTEPYRMFTSRVEFRMSLRPDN 418

Query: 442 ADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLR---SLLKSLVLTSKNLSSTSISFKQ 497
           AD RLT  G  + GC+    Q+R+ + +Q    L    + LKSL  +    S        
Sbjct: 419 ADARLTHRGFEEAGCVS---QQRYEQAVQMRAALEDGIATLKSLQFSISKWSHLVPEVPI 475

Query: 498 DGKTR---TAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMI 551
               R   +A++ L YP+ +++ L    P+  RK +    + ERL+IE++Y      Q  
Sbjct: 476 SSNRRSPLSAFDILRYPEANMEILARAIPEPLRKLAEWRELSERLKIEAAYEWCVVNQQQ 535

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           E +E++ +E   +P+D DY ++ A LS E++EKL+  +P  +   S+I G+TPAA+  LL
Sbjct: 536 EIEEVRRDEALRLPEDIDYFAIDASLSAEVREKLNSSRPQTIGAVSRIPGVTPAAIINLL 595

Query: 611 IYIKKNTVK 619
            ++K   +K
Sbjct: 596 RFVKAEKLK 604


>gi|148657274|ref|YP_001277479.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Roseiflexus sp. RS-1]
 gi|205375712|sp|A5UY26|MNMG_ROSS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148569384|gb|ABQ91529.1| glucose-inhibited division protein A [Roseiflexus sp. RS-1]
          Length = 679

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/663 (39%), Positives = 373/663 (56%), Gaps = 48/663 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  MSCNP+IGG  KGHLVREIDAL
Sbjct: 9   YDVIVVGAGHAGCEAAHAAARMGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGRV D   IQ R+LN  KGPAV+ PR QAD+ LY   M+  + +  NLD+ Q  + 
Sbjct: 69  GGLMGRVTDRTFIQIRLLNESKGPAVQAPRAQADKRLYAKVMKETLETIPNLDLRQAMIE 128

Query: 126 GFNTEKNIIS----------------SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                + I                  ++V     + +C  +VLTTGTFLRG    G    
Sbjct: 129 RIILPRPINRNGSDTDDAEALCPGHYAVVTHTRRIYQCRALVLTTGTFLRGRAITGDAIW 188

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G++P+ +L        F   RLKTGTP R+D +TI +  T  Q      + F F 
Sbjct: 189 GAGRAGEAPATALGEDLAALGFPLVRLKTGTPPRIDARTIDFSLTSVQHGSATPLFFGFY 248

Query: 230 TDKITNR------------------------QIECGITRTNLETHRIIMENIKHSAIYSG 265
              +                           Q+ C +  T  E H I+  N+  + ++SG
Sbjct: 249 YRALNEAPPEPAFGGPPASAYPEPLLDAWRPQLPCYLVHTTPEFHEIVRRNLDRAPLFSG 308

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKIVRF ++  H +FLEPEG +T  VY  G +T+LPE++Q   +R+
Sbjct: 309 IIEGVGPRYCPSIEDKIVRFADKERHGLFLEPEGWSTHEVYVQGCNTSLPEDVQWAMLRS 368

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           IP L +V ++R GYAIEYD +   E+   + +++  GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 369 IPALRRVELMRAGYAIEYDALATGEIAADMSSRRAPGLFFAGQINGTTGYEEAAAQGLMA 428

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+AR       +   R ++YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 429 GINAARFVQGKPSVLLRRDEAYIGVLIDDLVTKEIREPYRMFTSRAEHRLLLRADNADLR 488

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-----TSKNLSSTSISFKQDGK 500
           LTP+  +LG +   R     +  +E   L ++L+   L      +  LS+  I+    G+
Sbjct: 489 LTPLAGELGLVDRERVAVVERKREEVERLLAVLRGKRLYPSAAINARLSAAGIA-PLTGE 547

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             +A E L  P+   + L     D     + V E++ IE+ Y+ Y  +Q  E + ++  E
Sbjct: 548 M-SAEEVLRRPEVRYRQLQPAL-DLPACEADVAEQVDIEAKYSGYLLKQQREVERLRRME 605

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            R IP DFD+++L  L NE ++ L   +P  + QA+++ G+ PA + LLL+ +++ T + 
Sbjct: 606 SRRIPPDFDFAALRGLRNEARQTLQRFRPATIGQAARLAGINPADIALLLVALERQTRQA 665

Query: 621 NEI 623
             +
Sbjct: 666 TPV 668


>gi|145347494|ref|XP_001418199.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578428|gb|ABO96492.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 608

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/613 (43%), Positives = 361/613 (58%), Gaps = 54/613 (8%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGGLGKG L RE+DALDGLM R AD  GIQFR+LN  KGPAVRG R Q DRELY
Sbjct: 1   MSCNPSIGGLGKGTLAREVDALDGLMARAADGGGIQFRMLNSSKGPAVRGARAQMDRELY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTE------KNIISSIVMQDNSMIRCSTVVLTTGTF 157
           +  +QR + +   LDV+   V   + +      + ++  +V+ +   +R  +VV+TTGTF
Sbjct: 61  KGEIQRLVSAVGGLDVVDAAVVDLDIDHASDGSRGVMRGVVLDNGRTLRAKSVVITTGTF 120

Query: 158 LRGVIHIGKLKIPAGRMGDS-----------PSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
           L GV+HIG  ++ AGR+ +             ++SL  +     F  GR+KTGTP RLDG
Sbjct: 121 LNGVLHIGSKRVVAGRLANDTTQQADLKAGEAAHSLARTLYGIGFKMGRMKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTD---------KITNRQIECGITRTNLETHRIIMENI 257
           KTI W     Q  D   +PF+F +          K   RQI C  T T  ET + I    
Sbjct: 181 KTIDWSACAPQPGDAVPVPFAFTSSSRPVHAEAWKPPARQIMCHSTYTTSETEKYIAAAP 240

Query: 258 KHSAIYSGDIKS-YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           K S     D++S   PRYCPSIE K+ RF  R  H+I+LEPEGLNTDVVYPNGI+  L  
Sbjct: 241 K-SKYELDDVESPTTPRYCPSIESKVRRFPGRT-HRIWLEPEGLNTDVVYPNGITNNLEP 298

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           E+Q + +RTIPGLE   I+ PGY +EYDY++P+EL  TLETK+I GLFLAGQINGTTGYE
Sbjct: 299 ELQKEMVRTIPGLENAVILSPGYGVEYDYVDPRELRITLETKRIQGLFLAGQINGTTGYE 358

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EAAAQG++AG N+A  S   +     R  SY+GV++DDLTS+G  EPYRMF+SR EYR+S
Sbjct: 359 EAAAQGVIAGANAA--SVDGEEFVVPRYSSYLGVLVDDLTSRGTSEPYRMFSSRVEYRLS 416

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT------------ 484
           +R DNAD RLT +G + G +   R +  A+           L ++ L             
Sbjct: 417 IRSDNADLRLTELGERYGVVSAERARAAARRRTLVEQAGGALDAITLIPSRWQAYAPDLP 476

Query: 485 ----SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                ++LS++++    +  D   R   + L   D  ++ L S+  + R       E   
Sbjct: 477 IAKHGRHLSASNMLAQGWDVDKILRVVADVLGPLDPHVRALRSVNEEDRS----AFECAA 532

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ Y  Y  RQ  +  +++ EE+  IP+ FDYS++  LS E +EKL  ++P    +AS+
Sbjct: 533 IEAYYKPYIERQAQDIDDMRREEELAIPETFDYSAIDNLSLEDREKLEAVRPTTFARASR 592

Query: 598 IEGMTPAALNLLL 610
           I G+TPAAL  LL
Sbjct: 593 ISGVTPAALLSLL 605


>gi|224541705|ref|ZP_03682244.1| hypothetical protein CATMIT_00877 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525374|gb|EEF94479.1| hypothetical protein CATMIT_00877 [Catenibacterium mitsuokai DSM
           15897]
          Length = 619

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/617 (40%), Positives = 366/617 (59%), Gaps = 12/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAG EA    A+ G  T LIT   S  GSM CN +IGG  KG +VREIDAL
Sbjct: 2   YDIIVVGAGHAGIEACLAGARTGNKTLLITSNFSNAGSMPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q ++LN  KGP V+  R QAD++ Y   MQ+ +  QENLD+++  V 
Sbjct: 62  GGQMGKTTDATYLQMKMLNTAKGPGVQSLRAQADKKAYPRYMQKVLKEQENLDIVEAMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +    +++ D +     T +LTTGT+L+  + +G  K P+G      S  L + 
Sbjct: 122 DLIVEGDECKGVILADGTRYESHTTILTTGTYLKAEVLVGHSKTPSGPDKQKESLYLSSK 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGIT 243
              + F   RLKTGTP R++  +I + KT  Q   +  + FS+ T   T    Q  C +T
Sbjct: 182 LKDYGFRIQRLKTGTPPRVEINSIDYSKTTVQPGTDAKLSFSYETTHFTPVEDQTVCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH++I +N+   A++SG IK  GPRYCPSIEDK+V+F ++  HQIFLEPE    +
Sbjct: 242 YTTAQTHKLIRDNLDKCAMFSGLIKGIGPRYCPSIEDKVVKFADKERHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST++P +IQ + + ++PGLE   I++  YAIEYD I+P +L+P+LETK +  L
Sbjct: 302 TIYVQGFSTSMPHDIQEKMVHSLPGLENCTILKYAYAIEYDAIDPLQLWPSLETKVLKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+++K      +   R ++YIGV+IDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLIAGINASKKVKGNKPLILKRDEAYIGVLIDDLVTKGTKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-V 482
           YRM TSRAEYR+ LR DNAD RL   G   G + +   + ++ Y+ + N + + ++ L  
Sbjct: 422 YRMLTSRAEYRLLLRHDNADERLRKYGHDAGLVND---EVYSLYLDKMNRIHAEIERLDT 478

Query: 483 LTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +     S  +   ++ G TR     TA   L  P+   ++L          +   + R+ 
Sbjct: 479 IHFSPKSEINDLLEEKGSTRLKEGVTARAILQRPELVYEDLLPYIEHV-DLTEEEMRRVT 537

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  + + + +++K  E++ IP D DY  +  LS E ++KL  ++P  + QA++
Sbjct: 538 ILIKYKGYIEKTLRQVEKVKNMEEKQIPADLDYDDVLNLSLEARQKLKKVRPVTIGQATR 597

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+ PA +++LLI++K
Sbjct: 598 ISGINPADISVLLIHLK 614


>gi|325299507|ref|YP_004259424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides salanitronis DSM 18170]
 gi|324319060|gb|ADY36951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides salanitronis DSM 18170]
          Length = 623

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/624 (41%), Positives = 366/624 (58%), Gaps = 17/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAAA +A LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVIGAGHAGCEAAAASANLGSKTCLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGE 123
           L G MG V D   IQFR+LN  KGPA+  PR Q DR  + +   REIL    NL + Q  
Sbjct: 64  LGGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRAKF-IWTWREILENIPNLHIWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +V           V+LT GTFL G++HIG+  +  GR  +  S  L 
Sbjct: 123 VEELLVEDGEVKGVVTCWGVTFYARCVILTAGTFLNGLMHIGRKMLAGGRCAEPASYHLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +     GR+KTGTP R+D +++ +   E Q  +     FSFM++    +Q++C   
Sbjct: 183 ESITRHGITAGRMKTGTPVRIDARSVDFSLMETQDGENDFHSFSFMSEPRHLKQLQCWTC 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H ++   +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 243 YTNEEVHAVLRSGLADSPLYNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTR 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP +IQ   +R IP    V   RPGYAIEYDY +P +L  TLE+K I  L
Sbjct: 303 ELYLNGFSSSLPMDIQFAALRKIPCFRNVVAYRPGYAIEYDYFDPTQLTHTLESKVIKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEA  QG++AGIN+ +     +     R ++YIGV+IDDL +KGV EP
Sbjct: 363 FFAGQVNGTTGYEEAGGQGIIAGINAHQNCTGGEPFVLGRDEAYIGVLIDDLVTKGVDEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYRI LR D+AD RLT    +LG     ++ R+    ++   ++ L++   +
Sbjct: 423 YRMFTSRAEYRILLRQDDADMRLTERAYRLGLA---KRDRYDMLCRKREMIQHLVEFAKV 479

Query: 484 TSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ- 537
            S      + + +  G  R A+     + LS P  +I+N+    P  +     V +R + 
Sbjct: 480 YSIKTDKINDTLESLGTARLAHGCKLIDLLSRPQITIENIAPHIPAFQAELDKVTDRKEE 539

Query: 538 -IESS-----YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            +E++     Y  Y  R+ + A +I   E   I   FDY++L +LS E ++KL  + P  
Sbjct: 540 TLEAAEVLIKYQGYIDRERMIADKIHRLESIKIKGRFDYANLNSLSTEARQKLIKIDPET 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +N+LL+ + +
Sbjct: 600 LAQASRIPGISPSDINVLLVLLGR 623


>gi|115375135|ref|ZP_01462403.1| glucose-inhibited division protein A subfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|115367881|gb|EAU66848.1| glucose-inhibited division protein A subfamily [Stigmatella
           aurantiaca DW4/3-1]
          Length = 621

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/630 (40%), Positives = 365/630 (57%), Gaps = 36/630 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA   ++LG ST  +T K      MSCNPA+GG  KGHLVRE
Sbjct: 15  MKHRYDVIVVGLGHAGCEAALACSRLGLSTLGLTLKRDRAAVMSCNPAVGGTAKGHLVRE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR AD +G  F+ LN  KGPAV+  R   DR+ Y   +Q  + SQ +L V +
Sbjct: 75  LDALGGEMGRAADLSGTHFKTLNASKGPAVQATRILCDRDAYARTVQAALFSQPHLTVHE 134

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   ++ +V+ D S ++   V+LTTGTFL+ ++H+G+ K   GR+GD  +  
Sbjct: 135 AEVSSLAVEDGHVAGVVLGDGSQVQARAVLLTTGTFLQALMHVGEKKEVGGRLGDEAARG 194

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--------I 233
           L  S     F  GR KTGTPARL   +I WD  E Q  D    PFS+ T +         
Sbjct: 195 LSLSLRSLGFTLGRFKTGTPARLRRDSIDWDAVEPQPTDAPPRPFSWRTRQDIASGVPFP 254

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               + CGIT T   THR++ +N+  S ++ GDI   GPRYCPS+EDK+VRF  R  HQ+
Sbjct: 255 LQPSVTCGITFTTEATHRLLRDNLHRSPLFQGDIVGRGPRYCPSLEDKVVRFAARERHQV 314

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG ++ +VYP G+ST++P ++Q  F+R+IPGL +V ++R GYA+EYDY  P +L  
Sbjct: 315 FLEPEGPDSPLVYPAGLSTSMPADVQLDFLRSIPGLAQVEVVRFGYAVEYDYAPPTQLSS 374

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK + GLF AGQ+NGT+GYEEAA QGL AG+N+A +      +   R +++  V++D
Sbjct: 375 TLETKAVRGLFFAGQLNGTSGYEEAAFQGLYAGLNAALQVKGEPPLLLGREEAHGAVLVD 434

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           +L +KGV EP+RMFTSR+E+R+ LR  NA+ RL   G ++G +     +R    +     
Sbjct: 435 ELVTKGVDEPFRMFTSRSEHRLKLREGNAEARLARHGHRVGLLPREALERVEARVHAVQR 494

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + LK   L ++                     L  P+ +     S+  +AR++  +  
Sbjct: 495 EVARLKRSGLGAR---------------------LKRPEVTYA---SLAAEAREWPEVPP 530

Query: 534 ERLQIESSYAAYTG----RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           E  +       Y G     +   A+E    +  +IP  F ++ +  LS+E  EKLS  +P
Sbjct: 531 EVAEEVEVEVKYEGYIAQAERAAAREADAWDGWVIPAGFRFAEVRGLSSEAVEKLSAHRP 590

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + Q  +I G+TPAAL+L+L+ +K+   +
Sbjct: 591 GTVGQVRRIPGLTPAALSLVLVALKRERAR 620


>gi|310825572|ref|YP_003957930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Stigmatella aurantiaca DW4/3-1]
 gi|309398644|gb|ADO76103.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Stigmatella aurantiaca DW4/3-1]
          Length = 607

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/630 (40%), Positives = 365/630 (57%), Gaps = 36/630 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA   ++LG ST  +T K      MSCNPA+GG  KGHLVRE
Sbjct: 1   MKHRYDVIVVGLGHAGCEAALACSRLGLSTLGLTLKRDRAAVMSCNPAVGGTAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR AD +G  F+ LN  KGPAV+  R   DR+ Y   +Q  + SQ +L V +
Sbjct: 61  LDALGGEMGRAADLSGTHFKTLNASKGPAVQATRILCDRDAYARTVQAALFSQPHLTVHE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   ++ +V+ D S ++   V+LTTGTFL+ ++H+G+ K   GR+GD  +  
Sbjct: 121 AEVSSLAVEDGHVAGVVLGDGSQVQARAVLLTTGTFLQALMHVGEKKEVGGRLGDEAARG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--------I 233
           L  S     F  GR KTGTPARL   +I WD  E Q  D    PFS+ T +         
Sbjct: 181 LSLSLRSLGFTLGRFKTGTPARLRRDSIDWDAVEPQPTDAPPRPFSWRTRQDIASGVPFP 240

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               + CGIT T   THR++ +N+  S ++ GDI   GPRYCPS+EDK+VRF  R  HQ+
Sbjct: 241 LQPSVTCGITFTTEATHRLLRDNLHRSPLFQGDIVGRGPRYCPSLEDKVVRFAARERHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG ++ +VYP G+ST++P ++Q  F+R+IPGL +V ++R GYA+EYDY  P +L  
Sbjct: 301 FLEPEGPDSPLVYPAGLSTSMPADVQLDFLRSIPGLAQVEVVRFGYAVEYDYAPPTQLSS 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK + GLF AGQ+NGT+GYEEAA QGL AG+N+A +      +   R +++  V++D
Sbjct: 361 TLETKAVRGLFFAGQLNGTSGYEEAAFQGLYAGLNAALQVKGEPPLLLGREEAHGAVLVD 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           +L +KGV EP+RMFTSR+E+R+ LR  NA+ RL   G ++G +     +R    +     
Sbjct: 421 ELVTKGVDEPFRMFTSRSEHRLKLREGNAEARLARHGHRVGLLPREALERVEARVHAVQR 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + LK   L ++                     L  P+ +     S+  +AR++  +  
Sbjct: 481 EVARLKRSGLGAR---------------------LKRPEVTYA---SLAAEAREWPEVPP 516

Query: 534 ERLQIESSYAAYTG----RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           E  +       Y G     +   A+E    +  +IP  F ++ +  LS+E  EKLS  +P
Sbjct: 517 EVAEEVEVEVKYEGYIAQAERAAAREADAWDGWVIPAGFRFAEVRGLSSEAVEKLSAHRP 576

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + Q  +I G+TPAAL+L+L+ +K+   +
Sbjct: 577 GTVGQVRRIPGLTPAALSLVLVALKRERAR 606


>gi|291297418|ref|YP_003508816.1| glucose inhibited division protein A [Meiothermus ruber DSM 1279]
 gi|290472377|gb|ADD29796.1| glucose inhibited division protein A [Meiothermus ruber DSM 1279]
          Length = 610

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/623 (41%), Positives = 364/623 (58%), Gaps = 32/623 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R+YDVIV+GGGHAG EAA  AA+LGA   L+T     IG M CNPA+GG GK  LV 
Sbjct: 7   MGMRAYDVIVVGGGHAGIEAAWAAARLGARVGLVTSNPERIGLMPCNPAVGGPGKSQLVA 66

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EI+AL GLMGR+ADA  I  RVLN  KGPAV+  R Q DR+LY L  QR +L    ++ +
Sbjct: 67  EIEALGGLMGRLADATAIHTRVLNRSKGPAVQSLRVQVDRDLYALEAQRVLLGHPQIESV 126

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           + EVA    E+  +  +   D   +    VV+ +GTFL+GV+  G+   PAGR G+ P+ 
Sbjct: 127 RAEVAALWVERGRLCGVQTVDGRKLPARAVVVASGTFLQGVVWYGRQSRPAGRQGEPPAR 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL-----IPFSFMTDKITN 235
            L  S         R KTGTP R+   ++ + K E   AD        +P    T + T 
Sbjct: 187 FLSESLRAVGHRLLRFKTGTPPRIQADSVDYQKLEVVPADNPPETFSGVPGPHATARPTW 246

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +      TRT   THR+I EN+  S +Y GDI+  GPRYCPSIEDK+VRF ++  H +F+
Sbjct: 247 Q------TRTTAATHRLIQENLHLSPLYGGDIEGIGPRYCPSIEDKVVRFSDKETHLLFV 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EP+GL+T  +Y  G S++LP E+Q Q ++++PG E+  I R  YA+EYD ++P EL P L
Sbjct: 301 EPDGLHTTELYLQGFSSSLPPELQIQMVQSLPGFERAVIQRYAYAVEYDAVDPLELTPGL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           +++ + GLF AGQ+NGT+GYEEAAAQGL+AG+N+AR +  L+     R   YIGVMIDDL
Sbjct: 361 QSRMLPGLFTAGQLNGTSGYEEAAAQGLLAGLNAARYAMGLEEAHLPRASGYIGVMIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC-IGERRQKRFAKYIQEYNFL 474
             +GV EPYRM TSR E R+  R DNAD RL P+    G  + E  +   AKY +    L
Sbjct: 421 VHRGVDEPYRMMTSRVELRLLCRSDNADERLVPLAADWGLRLAEDLKAVQAKYARVQGEL 480

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLV 532
             L +S +                 +  +A ++L  P+ S + +  +   P+    S   
Sbjct: 481 LRLQRSRI-----------------EGVSALQYLRRPEASYEQVLQMIGSPEM-PLSKAE 522

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             ++++ + YA Y  RQ    +++K  E   +P D DY+ +P+LS E  EKL  ++P ++
Sbjct: 523 AYQVEVRAKYAGYMERQARLREKLKELEAYRLPADLDYACVPSLSKEAVEKLGRIRPHSV 582

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            +AS++ G+  + +  LL++I K
Sbjct: 583 AEASRVPGIRDSDITALLVHIAK 605


>gi|38197078|gb|AAH05808.2| MTO1 protein [Homo sapiens]
          Length = 653

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 377/617 (61%), Gaps = 50/617 (8%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 11  MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 70

Query: 104 RLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V           +T K  +S +V+ D S +   +V+LTTG
Sbjct: 71  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 130

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 131 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 190

Query: 216 KQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +  +   Q+ C +T TN     I+++N+  ++      +  GP
Sbjct: 191 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GP 248

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 249 RYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 307

Query: 333 NIIRP-------------------------GYAIEYDYINPKELFPTLETKKISGLFLAG 367
            +I+P                         GY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 308 KVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 367

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMF
Sbjct: 368 QINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMF 427

Query: 428 TSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           TSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S 
Sbjct: 428 TSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSS 487

Query: 486 ---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIE 539
              K +   SIS  +    R A + L Y +  + +L    P+  +K++    + ERL+IE
Sbjct: 488 KWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIE 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASK 597
           ++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+
Sbjct: 547 ATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASR 606

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAA+  LL ++K
Sbjct: 607 IPGVTPAAIINLLRFVK 623


>gi|55961491|emb|CAI14882.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569149|gb|EAW48764.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_e [Homo sapiens]
          Length = 643

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 377/617 (61%), Gaps = 50/617 (8%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGF--------NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V           +T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +  +   Q+ C +T TN     I+++N+  ++      +  GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRP-------------------------GYAIEYDYINPKELFPTLETKKISGLFLAG 367
            +I+P                         GY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 298 KVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 357

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMF
Sbjct: 358 QINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMF 417

Query: 428 TSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           TSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S 
Sbjct: 418 TSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSS 477

Query: 486 ---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIE 539
              K +   SIS  +    R A + L Y +  + +L    P+  +K++    + ERL+IE
Sbjct: 478 KWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIE 536

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASK 597
           ++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+
Sbjct: 537 ATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASR 596

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAA+  LL ++K
Sbjct: 597 IPGVTPAAIINLLRFVK 613


>gi|303280357|ref|XP_003059471.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459307|gb|EEH56603.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 731

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 263/630 (41%), Positives = 370/630 (58%), Gaps = 31/630 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A+ GA T L+T     +    CNPA+GG  K  LV E+DAL
Sbjct: 77  YDVIVVGAGHAGCEAALASARKGARTLLLTLSLDRVAWQPCNPAVGGPAKSQLVHEVDAL 136

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GR+AD   +Q RVLN  +GPAV   R Q D+  Y   M R  L +E L  I+    
Sbjct: 137 GGEIGRIADKTYLQKRVLNASRGPAVWALRAQTDKWEYSREM-RARLEREPLIAIR---- 191

Query: 126 GFNTEKNIISSIVMQDNSMIR-----------CSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                + + + +V+ DN  ++              VVLTTGTF+ G I +G+  + AGR 
Sbjct: 192 -----EGMATELVLGDNDDVKGVKTFFGMTFTSRAVVLTTGTFMSGQIWVGRKTLAAGRA 246

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G++PS  L    +   F+T RLKTGTPAR+D ++I +   E+Q  DE +  F+F  +   
Sbjct: 247 GEAPSVGLTECLVDLGFETDRLKTGTPARVDSRSIQYRGLERQPGDEDVRWFTFDENAHV 306

Query: 235 NR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            R Q++C +TRT  ETH +I EN+  +  Y G + + GPRYCPSIEDKIVRF E++ HQI
Sbjct: 307 ARPQMDCHLTRTTAETHALIRENLHETPTYGGWVGAKGPRYCPSIEDKIVRFAEKDSHQI 366

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG +   VY  G ST LPE +Q   +RT+PGLE   ++RP YA+EYD++   +  P
Sbjct: 367 FLEPEGRDVPEVYVQGFSTGLPERLQLALLRTLPGLEACKMLRPAYAVEYDFLPAYQCGP 426

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKISGLF +GQINGTTGYEEAA QGL+AG N+A  +     +   R  SY+G +ID
Sbjct: 427 TLETKKISGLFFSGQINGTTGYEEAAGQGLLAGANAAAVALATSALILPRESSYLGTLID 486

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFAKYI 468
           DL +K + EPYRM TSR+EYR+ LR DNAD RLTP+G + G + + R     +KR A   
Sbjct: 487 DLCTKDLREPYRMLTSRSEYRLVLRSDNADARLTPLGRECGLVDDDRWRFFTEKRDAMER 546

Query: 469 QEYNFLRSLLKSLVLTSKNL--SSTSISFKQDGKTRTAYEFLSYPDFSIQNL--FSICPD 524
           +      + +KS    ++ +   S + + K   ++ T  E L  P  S      +    D
Sbjct: 547 ETTRLTTTRVKSDTPLAQRVIDISGANAAKPSRQSFTLRELLRRPRVSHATFAEYGHGGD 606

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
               S    E ++ E  Y  +  RQ ++  ++  +  + IPKD  Y+ +  L  E +EKL
Sbjct: 607 ENSLSRWAAEAVETEVKYEGFIKRQEVQVAKVAGKMNKAIPKDVCYADVTTLRMEAREKL 666

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + ++P  + QAS+I G+TPA +  LL++++
Sbjct: 667 AKMRPTTIGQASRIGGVTPADVASLLVHLE 696


>gi|295131913|ref|YP_003582589.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zunongwangia profunda SM-A87]
 gi|294979928|gb|ADF50393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zunongwangia profunda SM-A87]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/631 (42%), Positives = 378/631 (59%), Gaps = 28/631 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAG EAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNKEYDVIVVGAGHAGSEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDAMGGYSGLVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLRLEQTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E   I  +       IR  +VV T GTFL G+IHIG  +   GR G++ + 
Sbjct: 121 QEMVHGLIIENGKIKGVRTSLGIEIRAKSVVCTNGTFLNGLIHIGDKQRGGGRAGEAAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    +   F+ GR+KTGTP R+DG+++ + K  +Q  DE    FS+  + K  ++Q  
Sbjct: 181 GITKDLIDAGFEAGRMKTGTPPRVDGRSLDYSKMIEQPGDEVPGKFSYSDETKPLSKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+      S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSNEVHDILRSGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q   + ++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFAALSSVAGFENVKFFRPGYAIEYDYFPPTQLQHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA QG++AGIN+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLYFAGQINGTTGYEEAACQGMMAGINAALKVQEKDPFILQRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT    KLG   E R ++  +  ++     S LK
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTERSYKLGLASEDRMRKMEEKKEKSLAFVSFLK 480

Query: 480 SLVLTSKNLSS-----TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--- 531
              +  ++ +       S   KQ  K    ++  S P+ ++        D RKF  +   
Sbjct: 481 DTSVVPEDANPVLADYNSSPMKQSDKI---FKIFSRPNIAMD-------DVRKFPGVEEY 530

Query: 532 ---------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    ++E+ +I+  Y+ Y  ++   A ++   E   IPK FDYS + ++S E +E
Sbjct: 531 IQQHHLDTEMLEQTEIQIKYSGYIQKEKNNADKLNRLEDVKIPKHFDYSKIKSMSFEARE 590

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           KL+ ++P N+ QAS+I G++P  +++LL+Y+
Sbjct: 591 KLNKIQPANVSQASRISGVSPNDISVLLVYM 621


>gi|194246538|ref|YP_002004177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Phytoplasma mali]
 gi|193806895|emb|CAP18324.1| Glucose-inhibited division protein A [Candidatus Phytoplasma mali]
          Length = 624

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/616 (41%), Positives = 376/616 (61%), Gaps = 8/616 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD IV+GGGHAG EAA + AK    T LIT     IG + CNPAIGG  KG +VREIDA
Sbjct: 2   NYDSIVVGGGHAGIEAALILAKKNKKTLLITGSLEQIGCLPCNPAIGGPAKGVVVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+ AD + IQ ++LN  KGPAVR  R Q D+  Y   +   +    NL +++G V
Sbjct: 62  LGGIMGKAADLSQIQMKMLNSSKGPAVRALRAQIDKLKYPKVILEILKKTNNLTLLEGLV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  N I  + +++ S+I   TV++TTGT+L   I IG+ KI +G   +  +  +  
Sbjct: 122 EELIINNNQIEGVKLKNKSIIFGKTVIITTGTYLSSKIFIGEDKILSGPNNNPTNYGISK 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              + +F+  RLKTGTP R+   TI + KT+ Q+ ++    FSF +  K   +Q  C +T
Sbjct: 182 QLKQNNFEIIRLKTGTPPRIKKNTIDYSKTKIQYGNDVFQTFSFDSPIKTIGKQEPCFLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T+ II + +K S++Y G I+  GPRYCPSIEDK+VRF  +N HQ+F+EPE L  +
Sbjct: 242 YTNQKTNDIINKYLKQSSMYGGYIEGKGPRYCPSIEDKVVRFCNKNQHQVFIEPESLKLN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST++P+ +QH+ ++TIPGLE   I++ GYAIEYD +NP +L+ +LETKKI  L
Sbjct: 302 EMYLQGLSTSMPKHVQHKILKTIPGLENAEIVKYGYAIEYDALNPNQLYHSLETKKIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EP
Sbjct: 362 FFAGQINGTSGYEEAACQGLIAGINASLKMENKPPFILKRNEAYIGVLIDDLINKGTHEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RL     K+  I E   ++F     +   +   +++L +
Sbjct: 422 YRLLTSRAEFRLLLRHDNADLRLKEHAYKMALISEENYQKFKTKKNKIKDVLKQIENLQI 481

Query: 484 --TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               KNL+  S +F+     +  +  + L  P+ +   L     +       + E+++I+
Sbjct: 482 EPNKKNLNYLS-NFQSSLISEKTSLSQLLKRPEINFHFLKYFFQE--NIDHYIFEQVEIQ 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   E  ++   E ++I  + +YS +  LS E +EKL ++KP+NL QAS+I 
Sbjct: 539 IKYQGYIKKAQKEVDKLLKLEGKIISTNIEYSKINNLSKEAQEKLDLIKPYNLGQASRIS 598

Query: 600 GMTPAALNLLLIYIKK 615
           G+ P  +++L+IY++K
Sbjct: 599 GINPTDISILMIYLEK 614


>gi|257457426|ref|ZP_05622596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema vincentii ATCC 35580]
 gi|257445155|gb|EEV20228.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema vincentii ATCC 35580]
          Length = 639

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/637 (41%), Positives = 373/637 (58%), Gaps = 36/637 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA+  AA+LGA T LIT    TIG MSCNP+IGG+ KG++VREIDAL
Sbjct: 11  YDVIVVGGGHAGIEASLAAARLGAHTLLITQTVDTIGRMSCNPSIGGVSKGNIVREIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-------- 117
            G MG++ADA  IQ+R+LN  +GPAV+ PR QAD+ LY    Q  +  ++NL        
Sbjct: 71  GGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQTAQYTLEKEKNLHIYQDTVV 130

Query: 118 DVIQGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           DVI  + A     E   + +++      I    VVLTTGTF+ G I+IG+ +   GR+G+
Sbjct: 131 DVISSQTAESGVVENGSVQAVLTARGRTISARAVVLTTGTFMEGKIYIGEFEAEEGRLGE 190

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  L  +  +  F  GRLKTGTP R+  K++     E Q AD  + PFSF T +I   
Sbjct: 191 KAAIGLGTALARKGFTMGRLKTGTPCRVLRKSVDLSVLEIQEADAVMRPFSFDTAEIFRP 250

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
              C +  TN  TH +I +N   S ++SG I + G RYCPSIEDK+ +F ER  HQ+++E
Sbjct: 251 SAVCYVCYTNEHTHEVIRQNFHRSPLFSGKIHATGARYCPSIEDKVRKFPERTRHQLYIE 310

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL +D +Y NG S++LPE++Q Q +RT+ G     I RP YA++Y  I+P +L P L+
Sbjct: 311 PEGLMSDELYINGFSSSLPEDVQDQMLRTLTGFADAVITRPAYAVDYAVISPLQLGPDLQ 370

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL-------------DCICFSR 403
           T++I+GLF AGQINGT+GYEEA  QGL+AGIN+A  S                +     R
Sbjct: 371 TRRIAGLFTAGQINGTSGYEEAGGQGLIAGINAALYSRACSTQPQPGTRPAAYEPFTLRR 430

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE----R 459
            ++YIGVMIDDL ++GV EPYRMFT+RAEYR+ LR D AD RLT    ++G   +    R
Sbjct: 431 DEAYIGVMIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTERAFRIGLQKQSSFTR 490

Query: 460 RQKRFAKY--IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN 517
            Q++ A+   + E+   R +  SL      L        Q    ++  + L  P  S++ 
Sbjct: 491 LQEKLAQRGELIEHWRERKITGSLAEAEPAL--------QCHLGKSFADALHDPLISLEL 542

Query: 518 LFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
           +    P++ ++S  +    ++E  Y  Y   Q     ++K  E   IP +F+Y ++  LS
Sbjct: 543 ICRCDPESTRYSDAIKTAAELEIRYEHYIIAQDKRIDKMKKMETSRIPANFNYDAVSGLS 602

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            E   +L  + P  + QAS+I G+ P+ + +L++ IK
Sbjct: 603 TESLARLKKVMPATIGQASRIPGIRPSDIMVLMVAIK 639


>gi|166222943|sp|Q4AAU6|MNMG_MYCHJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|144227418|gb|AAZ44097.2| glucose inhibited division protein A [Mycoplasma hyopneumoniae J]
          Length = 619

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 12  FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 72  GGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 132 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T T
Sbjct: 192 LKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKIKKQISCYLTYT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 252 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF+
Sbjct: 312 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLFM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 372 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 432 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 491

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 492 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 539 GYIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 598

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 599 ADIQMLLFHIK 609


>gi|39938754|ref|NP_950520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Onion yellows phytoplasma OY-M]
 gi|81170563|sp|Q6YQV5|MNMG_ONYPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39721863|dbj|BAD04353.1| glucose inhibited division protein A [Onion yellows phytoplasma
           OY-M]
          Length = 617

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/617 (41%), Positives = 367/617 (59%), Gaps = 12/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG EAA + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDSIVIGAGHAGVEAALILAK-KHNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M + AD A IQ ++LN  KGPAVR  R Q D+  Y   +   +    NL +++G V 
Sbjct: 62  GGVMAKAADLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIIFEILQKTLNLTLLEGLVN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +  + + D + I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 122 NLVIQNNQVQGVCLIDGTKINAKTVIITTGTYLASQILIGDTKKSSGPNGVPTTYGISTQ 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + +T+ Q  D     FSF+       Q  C +T T
Sbjct: 182 LKELGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQIFSFVPQTNQRPQEPCFLTHT 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L+ D +
Sbjct: 242 NQTTHQVIQKHLNQSAMYGGYVEGTGPRYCPSIEDKVVRFCDKNSHQIFIEPESLSLDEM 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LFL
Sbjct: 302 YLQGLSTSMPQHVQHEILKTIPGLQNAQITKYAYAIEYDAFNPNQLKHSLETKKIQNLFL 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPYR
Sbjct: 362 AGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL--RSLLKSLVL 483
           + TSRAE+R+ LR DNAD RL   G +LG I E+    F     + N L  +S    +++
Sbjct: 422 LLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDEKDYNNFQNKKAKINLLLEKSKNYEILV 481

Query: 484 TSKNLS----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            S NLS      S S    G+  T  + L  P+ +   L     +  K    + E+++I+
Sbjct: 482 NSDNLSYLKQQKSASL---GEKTTLAQLLKRPELNFCTLQHFLQE--KADKTIYEQVEIQ 536

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   EA+++   E++ IP   +Y+ +  LS E +EKL ++KP  L QA++I 
Sbjct: 537 IKYEGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAQEKLDLIKPQTLGQATRIL 596

Query: 600 GMTPAALNLLLIYIKKN 616
           G+    +++LL+Y++K+
Sbjct: 597 GVNQVDISILLVYLEKH 613


>gi|237720610|ref|ZP_04551091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_2_4]
 gi|229450361|gb|EEO56152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_2_4]
          Length = 628

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/623 (43%), Positives = 374/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK--RFAKYIQEY--NFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   E R +  R  K   E   +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALEKIGTTPLRQGCKL---IEILNRPQVTIKNIAEYVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|72080345|ref|YP_287403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae 7448]
          Length = 610

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 3   FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 63  GGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 123 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T T
Sbjct: 183 LKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTYT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 243 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF+
Sbjct: 303 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLFM 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 363 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 423 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 483 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 529

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 530 GYIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 589

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 590 ADIQMLLFHIK 600


>gi|255693287|ref|ZP_05416962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides finegoldii DSM 17565]
 gi|260620966|gb|EEX43837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides finegoldii DSM 17565]
          Length = 628

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/628 (42%), Positives = 377/628 (60%), Gaps = 30/628 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + +  + +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWRERLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++HIG+ K+P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTVWGVTFKAKCIVLTAGTFLNGLMHIGRHKLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM   + + +Q++C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDARSVHFDRMETQDGECDFHKFSFMNTSVRHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKSQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMDIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK----------RFAKYIQEYNFL 474
           RMFTSRAEYRI LR D+AD RLT    +LG   E R +          +   + Q Y+  
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAYQLGLAKENRYQLMKSKKGTVEQIVSFAQNYSMK 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSS 530
            +L+   +   K + +T +  +Q  K     E L+ P  +I+N+    P    +  K +S
Sbjct: 485 PALINDAL---KKIGTTPL--RQGCKL---IEILNRPQVTIENISEHIPAFQRELEKATS 536

Query: 531 L-------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
                   +IE  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++K
Sbjct: 537 SDEGRKEEIIEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQK 596

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLI 611
           L  + P  + QAS+I G++P+ +N+LL+
Sbjct: 597 LVKIDPETIAQASRIPGVSPSDINVLLV 624


>gi|166222942|sp|Q4A909|MNMG_MYCH7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|144575231|gb|AAZ53380.2| glucose inhibited division protein A [Mycoplasma hyopneumoniae
           7448]
          Length = 619

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 12  FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 72  GGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 132 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T T
Sbjct: 192 LKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTYT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 252 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF+
Sbjct: 312 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLFM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 372 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 432 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 491

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 492 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 539 GYIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 598

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 599 ADIQMLLFHIK 609


>gi|160883398|ref|ZP_02064401.1| hypothetical protein BACOVA_01367 [Bacteroides ovatus ATCC 8483]
 gi|260172652|ref|ZP_05759064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
 gi|315920943|ref|ZP_07917183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
 gi|156111118|gb|EDO12863.1| hypothetical protein BACOVA_01367 [Bacteroides ovatus ATCC 8483]
 gi|313694818|gb|EFS31653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
          Length = 628

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 271/623 (43%), Positives = 374/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTRHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK--RFAKYIQEY--NFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   E R +  R  K   E   +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALERIGTTPLRQGCKL---IEILNRPQVTIENIAEYVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|256419795|ref|YP_003120448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chitinophaga pinensis DSM 2588]
 gi|256034703|gb|ACU58247.1| glucose inhibited division protein A [Chitinophaga pinensis DSM
           2588]
          Length = 622

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/630 (43%), Positives = 381/630 (60%), Gaps = 30/630 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAAA AA +G+   L+T    TI  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   SYDVIVVGAGHAGCEAAAAAANMGSKVLLVTMNMQTIAQMSCNPAMGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGE 123
           L G  G + D + IQFR+LN  KGPA+  PRTQ DR L+  A  RE L Q  N+D  Q  
Sbjct: 64  LGGYSGIITDQSMIQFRMLNRSKGPAMWSPRTQNDRMLF-AAKWREALEQTPNVDFYQDM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   +      +V      I+  +VVLT GTFL GV+HIG  +   GR+ +  +  + 
Sbjct: 123 VKGLLVKDGRCYGVVTGLGHEIKAKSVVLTNGTFLNGVMHIGDKQFGGGRVAEKAATGIT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKIT-NRQIECG 241
              +   F++ RLKTGTP R+D +++ + K E+Q  D+ +  FS++  +KI   +Q  C 
Sbjct: 183 EQLVSLGFESDRLKTGTPPRIDARSLDYSKMEEQPGDDVITGFSYLDVEKIKPEQQRSCH 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+ + H ++      S ++ G I+  GPRYCPSIEDKI RF ER+ HQ+F+EPEG N
Sbjct: 243 ITYTSDKVHEMLKTGFDRSPMFQGRIQGVGPRYCPSIEDKINRFAERDRHQLFVEPEGWN 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q++ ++ +PG E V + RPGYAIEYDY  P +L  +LETK I 
Sbjct: 303 TVEIYVNGFSTSLPEDVQYKALQLVPGFENVKMFRPGYAIEYDYFPPTQLQFSLETKHIQ 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA QGL+AGIN+  K++        R+++YIGV+IDDL +KG  
Sbjct: 363 NLFFAGQINGTTGYEEAACQGLMAGINAHLKASGQAPFVLKRSEAYIGVLIDDLINKGTD 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI---QEYNFLRSLL 478
           EPYRMFTSRAE+R  LR DNAD RLT    ++G     RQ R  K I   +    ++++L
Sbjct: 423 EPYRMFTSRAEFRTLLRQDNADLRLTEQSFEMGLA---RQNRLDKVIVKKEGVEKIKAIL 479

Query: 479 KSL---------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPD---FSIQN-LFSICPDA 525
           K L         +L  KN S      +       AY+ L  P    FS++N +  I    
Sbjct: 480 KELPVDPEEINHLLAEKNTSPLPQRMR-------AYQILLRPTMDIFSMKNHVAKIGKAL 532

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            +F    +E+ +I+  Y  Y  ++    K +   E  LIP  FDY+ L +LS E ++K +
Sbjct: 533 AEFGDETLEQAEIQIKYEVYIEKENDLVKRMSQMEDLLIPDGFDYTKLVSLSAEARQKFN 592

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P  L QAS+I G+ P+ + +L++Y+ +
Sbjct: 593 KIRPRTLGQASRISGVNPSDVQILMVYMGR 622


>gi|47458989|ref|YP_015851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mobile 163K]
 gi|81170559|sp|Q6KID6|MNMG_MYCMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|47458317|gb|AAT27640.1| glucose inhibited division protein a [Mycoplasma mobile 163K]
          Length = 611

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/628 (40%), Positives = 375/628 (59%), Gaps = 29/628 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YD IVIGGGHAG EAA + +K   + ALI+   + + SM CNP+IGG  KG + R
Sbjct: 1   MAAKIYDAIVIGGGHAGVEAAFILSKKNFNVALISLNQNRLASMPCNPSIGGPAKGIITR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G     AD A IQ ++LN  KGPAVR  R Q D+E Y   + + +   +N+D+I
Sbjct: 61  EIDALGGKQAYFADQAMIQIKMLNTSKGPAVRAIRAQIDKEKYSQIILKAVQETKNIDLI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V    T+ N IS ++ + N ++   T ++T GT+L   I  G+ K  +G  G+  SN
Sbjct: 121 EDMVFEIQTKDNKISGVITEKNGLLETKTAIITAGTYLDSYILRGEEKYSSGPDGEKTSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL NS +K  F   RLKTGTP R+   +I + + E++   E  + FS    K  ++QI C
Sbjct: 181 SLSNSLIKLGFKLLRLKTGTPPRIYANSIDFSEVEEEILPESNLNFSIYHSKKLSKQIHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+ +TH+II++NI  S++YSG IK  GPRYCPS+EDKIVRF ++  HQIF EPE +
Sbjct: 241 YLTYTSEKTHQIILDNINKSSMYSGLIKGIGPRYCPSVEDKIVRFKDKERHQIFFEPETI 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D++Y NG+ST++P ++Q Q I++I GL+   + +  YAIEYD I+P +L  +LE+K+I
Sbjct: 301 KADIMYINGLSTSMPIDVQDQMIKSINGLKNAKVAKYAYAIEYDAIDPLQLKKSLESKEI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAA QGL+AGIN++ K    + +   R+DSYIGV+IDDLT+KG 
Sbjct: 361 ENLFFAGQINGTSGYEEAAGQGLLAGINASLKLENREALNLKRSDSYIGVLIDDLTTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RL             +  ++AK + +     +  K 
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADIRLL------------KYAKYAKTLTDKEIATTEAKY 468

Query: 481 LVLTSK--NLSSTSISF------KQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSL 531
            ++T K   L +  IS       K +    T++ + +S  +  I+ +    P        
Sbjct: 469 DLITKKIAELENQYISINDPLAKKYNLANSTSFLQLISRHEIDIKEIVGNFP-------- 520

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            +E L        Y  +Q+ +A ++   E   +P+D +Y ++  L+ E ++KL ++KP  
Sbjct: 521 FLEELSTNVRLDGYIKKQLSQADKMLRLENLKLPEDLNYDNVVNLAFEARQKLKMIKPLT 580

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVK 619
           + QAS+I G+ PA + +L+ ++    VK
Sbjct: 581 IGQASRISGINPADIQMLMFHLNLKVVK 608


>gi|71893362|ref|YP_278808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae J]
          Length = 610

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 265/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 3   FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 63  GGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 123 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T T
Sbjct: 183 LKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKIKKQISCYLTYT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 243 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF+
Sbjct: 303 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLFM 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 363 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 423 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 483 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 529

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 530 GYIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 589

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 590 ADIQMLLFHIK 600


>gi|221126291|ref|XP_002164847.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 607

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/600 (42%), Positives = 353/600 (58%), Gaps = 39/600 (6%)

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q N
Sbjct: 1   HLVKEVDAMGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRMLENQPN 60

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L + Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD
Sbjct: 61  LSLFQQAVDDLMVEGDRVVGAVTQVGIRFRGKTVVLTAGTFLDGKIHVGLNNYAAGRAGD 120

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIPF-SFM 229
            P+ SL     +     GRLKTGTP R+DG++I + K  +Q  D        ++P  SFM
Sbjct: 121 PPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKCIEQPGDGVPGGMSDVMPVVSFM 180

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            +  +  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++
Sbjct: 181 GNVAMHPQQVPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADK 240

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 241 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQYELVRSMAGLENAHILRPGYAIEYDYFDP 300

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  + ET++I GLF AGQINGTTGYEEAAAQG+ AGIN+A +    D     R  +Y+
Sbjct: 301 RSLKGSFETRQIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQVYSDDTWLPGRDQAYL 360

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G +LG +   R   F +  
Sbjct: 361 GVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADARLTEVGRELGLVDNARWDAFCRKR 420

Query: 469 QEYNFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
              +     L+S  +  +NL+   S  +  K         + L  P+ S   L S+  D 
Sbjct: 421 DAVSRETERLRSTWVNPRNLAADESERVLGKSIEHEYNLADLLRRPNVSYGGLMSL--DH 478

Query: 526 RKFSS--------------------------LVIERLQIESSYAAYTGRQMIEAKEIKFE 559
            K+++                           V+E+++I + Y+ Y  RQ  E +     
Sbjct: 479 GKYANRDLLDVVSRETAGLPTVDAAEVAFVAAVVEQVEIAAKYSGYINRQKDEVERAAHY 538

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E   +P D DY  + ALS E +++LS  +P  L QAS++ G+TPA ++LL+I++KK   +
Sbjct: 539 ENLRLPDDLDYMQVTALSIEARQRLSKYRPETLGQASRLSGITPATISLLMIHLKKGNFR 598


>gi|258569531|ref|XP_002543569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Uncinocarpus reesii 1704]
 gi|237903839|gb|EEP78240.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Uncinocarpus reesii 1704]
          Length = 680

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 266/625 (42%), Positives = 374/625 (59%), Gaps = 22/625 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++RE+D
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTMIREVD 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-TQADRELYR-LAMQREILSQENLDVIQ 121
           ALDG+ GR+ D AGIQFRVLN  KG  + G + ++  R+LY+   + R +   + L +++
Sbjct: 95  ALDGVAGRIVDKAGIQFRVLNRSKGSRLSGAQGSRLIRDLYKQYKLGRVVRPIQGLSIVE 154

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+VA     +  + +   +     R    V       RG         P+GRMG++ +  
Sbjct: 155 GKVADIVLSREDLENTPGRKRQNCRRQVRV-------RGSHSNWACVFPSGRMGEAATFG 207

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L  S     F  GRLKTGTP RLD KTI +   E Q  D    PFSF+ D +      Q+
Sbjct: 208 LSKSLRDAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPPPFSFLNDTVAVGDEDQL 267

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C  T TN + H I+  N+  S      +K  GPRYCPS+E KI+RF ++  H I+LEPE
Sbjct: 268 ACWSTYTNEKAHAIVTANLDKSVHIRETVK--GPRYCPSLESKIIRFKDKLRHMIWLEPE 325

Query: 299 GLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           G    DV+YPNGIS  +P + Q++ ++TI GLE V +++PGY +EYDY++P+ L PTLET
Sbjct: 326 GFAPNDVIYPNGISMTIPADAQYEMLKTIQGLEHVKMLQPGYGVEYDYVDPRSLKPTLET 385

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG+M+DDL +
Sbjct: 386 KLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKAPLTLSRSDGFIGIMVDDLIT 445

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G I ++R K F++  ++   L++L
Sbjct: 446 KGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVITDKRWKHFSETKEQLVELQTL 505

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP----DFSIQNLFS---ICPDARKFSS 530
           L++    S   S        D   R+A++ L       D  IQ+L S   +      F  
Sbjct: 506 LENTKYPSTIWSRKGFRVHTDSSLRSAFDLLCLNNANIDTIIQHLTSPTGLPYTTDSFDP 565

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E +  L  ++P 
Sbjct: 566 KIKARIAIEGTYSPYVKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERHALERVRPE 625

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++  A +IEG+TP+    LL+++++
Sbjct: 626 SVGMARRIEGVTPSGALKLLLHVRR 650


>gi|88801788|ref|ZP_01117316.1| glucose-inhibited division protein A [Polaribacter irgensii 23-P]
 gi|88782446|gb|EAR13623.1| glucose-inhibited division protein A [Polaribacter irgensii 23-P]
          Length = 625

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/623 (42%), Positives = 369/623 (59%), Gaps = 22/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAAA +A +GA T LIT     I  MSCNPA+GG+ KG +VREIDAL
Sbjct: 8   FDVIVVGGGHAGSEAAAASANMGAHTLLITTNLQNIAQMSCNPAMGGIAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G V D   IQF++LN  KGPA+  PR Q+DR  +    +  +   E LD  Q  V 
Sbjct: 68  GGYSGIVTDKTAIQFKMLNKSKGPAMWSPRVQSDRMQFSECWRTMLEQTEKLDFYQDSVN 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N I  +       I+  TV++T GTFL G+IHIG+     GR G+  S  +  +
Sbjct: 128 ELLFDGNKIIGVKTALGLEIKAKTVIITAGTFLNGLIHIGEKSFGGGRAGEGASTGITEA 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITR 244
            +K  F++GR+KTGTP R+D +++ + K  +Q  DE    FS + + K    Q  C +T 
Sbjct: 188 LVKKGFESGRMKTGTPPRVDSRSLDFSKMIEQPGDEITEKFSHLPSTKALTEQRSCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H ++ E    S +++G IKS GPRYCPS+EDKI RF  ++ HQIF+EPEG  T  
Sbjct: 248 TNPKVHELLREGFDRSPMFNGRIKSTGPRYCPSVEDKIDRFATKDRHQIFVEPEGWTTVE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG ST+LPE+IQ + IR I G E V  +R GYAIEYD+  P +L  +LETK I  LF
Sbjct: 308 MYVNGFSTSLPEDIQDKAIRAIEGFENVKFLRYGYAIEYDFFQPTQLKHSLETKLIENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+A K+         R ++YIGV+IDDL +KG  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLMAGVNAALKTQGKAPFILKRNEAYIGVLIDDLITKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--- 481
           RMFTSRAEYR  LR DNAD RLTP+G KLG   + R  R  +  ++   L   L      
Sbjct: 428 RMFTSRAEYRTLLRQDNADLRLTPLGYKLGLASQERMDRMLEKQKKTALLIQFLNETSVK 487

Query: 482 ------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSS 530
                 +L++K L+  + S K        ++  + P  S+ +   +             +
Sbjct: 488 QEEVNPILSAKGLALVNQSMK-------LFKVAARPQLSLSDFMHLTKLKDFLHEHVIQA 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
             IE+ QI   Y+ Y  ++   A ++   E  +IP  F Y  + +LS E  EKL+ +KP 
Sbjct: 541 DAIEQAQIHLKYSGYIDKEKNNADKLNRLENVVIPSSFIYEKVKSLSFEATEKLNKVKPT 600

Query: 591 NLLQASKIEGMTPAALNLLLIYI 613
           ++ QAS+I G++P+ +++LL+Y+
Sbjct: 601 SISQASRISGVSPSDISVLLVYM 623


>gi|332879861|ref|ZP_08447550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682238|gb|EGJ55146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 623

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 268/626 (42%), Positives = 376/626 (60%), Gaps = 14/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGAGHAGAEAAAAAANMGAKTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKHKVVGVRTSLGISIKAKSVVLTNGTFLNGVMHIGMKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF    +    Q +
Sbjct: 181 GITECLVQQGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEHPQKFSFSAATQPLQVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQIF+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDRHQIFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV  +RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVVGFEKVKFLRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AGIN+  K  + + +   R  +YIGV+IDDL +KG
Sbjct: 361 IEHLYFAGQINGTTGYEEAAAQGLMAGINAVLKIREREPLILKRDQAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD+RLTPIG ++G + E R + +    Q  +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADSRLTPIGYEIGTVSEERYRAWEAKEQRVDDFITYIK 480

Query: 480 SLVLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            L +T + ++       S   KQ  K +   + L+ P  ++ +   +   +R  +   + 
Sbjct: 481 ELSVTPEEVNPILEKYDSSPMKQGDKLQ---KVLTRPSVTLSDFEQLSKVSRYIAEHDLS 537

Query: 535 R-----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           +      ++   YA Y  ++   A ++   E   IP++FDY  + +LS E +EKL  ++P
Sbjct: 538 QEEKTCAEVAIKYAGYIEKEKNNADKLNRLESVRIPENFDYDKIVSLSFEGREKLKKIRP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++PA +++L+IY+ +
Sbjct: 598 ITLSQASRISGVSPADISVLVIYMGR 623


>gi|255074319|ref|XP_002500834.1| predicted protein [Micromonas sp. RCC299]
 gi|226516097|gb|ACO62092.1| predicted protein [Micromonas sp. RCC299]
          Length = 731

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/616 (42%), Positives = 362/616 (58%), Gaps = 37/616 (6%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           ++G MSCNP+IGGL KG LVREIDAL G+MG  ADA+GIQFRVLN  KGPAVRGPR Q D
Sbjct: 95  SVGEMSCNPSIGGLAKGALVREIDALGGIMGAAADASGIQFRVLNASKGPAVRGPRAQMD 154

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           R  Y+ ++Q  +    N++V+  + A ++     ++ +   D   I    VV+ TGTFLR
Sbjct: 155 RTTYKRSVQAMLFGTPNVEVV--DAAAYDLITCAVAGVETADGRKITAEAVVVATGTFLR 212

Query: 160 GVIHIGKLKIPAGRM----GDSP-------SNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
           GV+H+G  +IPAGRM     ++P       +++L +      F  GRLKTGTP RLDG +
Sbjct: 213 GVLHVGGRRIPAGRMPTAITENPDATAARGAHALADRLYGLGFQMGRLKTGTPPRLDGAS 272

Query: 209 IIWDKTEKQFADERLIPFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           I +   E+Q  DE   PF F+ DK      +Q+ C  TRTN ET R++ E+        G
Sbjct: 273 IDYSGLEEQRGDEPPRPFGFLHDKAWVPPMKQVSCWATRTNAETERVMKESRGFLNFEGG 332

Query: 266 DI-KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           +  ++ GPRYCPS+E K+ RF  R+ H ++LEPEGL+TDVVYPNG+S  L E  Q   +R
Sbjct: 333 ENGEAIGPRYCPSLEMKVKRFPGRS-HIVWLEPEGLDTDVVYPNGLSNTLDEPDQIAMLR 391

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           T+ GLE V ++RPGY +EYDY++P+EL  TLETK++ GLF AGQINGTTGYEEAAAQGLV
Sbjct: 392 TVAGLENVKMLRPGYGVEYDYVDPRELRWTLETKRVGGLFFAGQINGTTGYEEAAAQGLV 451

Query: 385 AGINSARKS------NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           AG N+A  +      + L      R  SY+GV++DDLT +G  EPYRMF+SR E+R+S+R
Sbjct: 452 AGANAAATALSRLGMDALPPSIVGRGASYLGVLVDDLTRRGTSEPYRMFSSRVEHRLSVR 511

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS---F 495
           PDNAD RLT  G   G +   R     +     +   + L+   + ++  ++  +     
Sbjct: 512 PDNADQRLTAAGELAGLVDSARALIARRRGDATDRAIAALEDARMGAQAWAAHGVDNAPA 571

Query: 496 KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI----------ERLQIESSYAAY 545
            + G+T +A E L+ P      + S   +A K +              +   +E  YA Y
Sbjct: 572 GKSGRTVSAAELLAIPGVGYARVTSALAEAGKTTGESTASGGIDDSRADSATVECYYAPY 631

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + + ++ EE   +P D DY ++  LS E +EKL   +P  L  A +I G+TP+A
Sbjct: 632 LARQRRDVETMRKEEAMELPMDLDYDAVGGLSAEDREKLKEFRPATLAAAQRISGVTPSA 691

Query: 606 LNLLLIYIKKNTVKLN 621
              L  ++    +K N
Sbjct: 692 AIALFRFVAAQKLKGN 707


>gi|312600976|gb|ADQ90231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mycoplasma hyopneumoniae 168]
          Length = 619

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 12  FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 72  GGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 132 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + + EK+      I FSF +     +QI C +T T
Sbjct: 192 LKRLGFELQRLKTGTPPRIFTSSIDFSRVEKEVLPVYNINFSFQSKHKLKKQISCYLTYT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 252 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF+
Sbjct: 312 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLFM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 372 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 432 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 491

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 492 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 539 GYIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 598

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 599 ADIQMLLFHIK 609


>gi|319900537|ref|YP_004160265.1| glucose inhibited division protein A [Bacteroides helcogenes P
           36-108]
 gi|319415568|gb|ADV42679.1| glucose inhibited division protein A [Bacteroides helcogenes P
           36-108]
          Length = 624

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/624 (43%), Positives = 378/624 (60%), Gaps = 26/624 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQDTVR 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V           +VLT GTFL G++H+G+  +P GRM +  S  L  S
Sbjct: 125 EILVENGEVVGLVTFWGVTFHAKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYELTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             K     GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q+ C    
Sbjct: 185 IAKHGITYGRMKTGTPVRIDGRSVHYELMDIQDGENDFHKFSFMNTGVRHLKQLPCWTCF 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH I+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEETHHILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLETKKI  LF
Sbjct: 305 LYLNGFSSSLPMDIQIAALKKIPAFKDLIIYRPGYAIEYDYFDPTQLKHTLETKKIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-----RQKRFA-----KYIQEYNFL 474
           RMFTSRAEYRI LR D+AD RLT    KLG + E      RQKR A      + ++Y+  
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKEDRYELLRQKREAVSHIINFARDYSMK 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-FSICPDARKFSSL-- 531
            +L+  ++   + L +T +  +Q  K     + ++ P  +I N+   +    R+   +  
Sbjct: 485 PTLINPIL---EQLGTTPL--RQGCKL---IDLINRPQITIDNMAVHVSALKRELDKVND 536

Query: 532 ----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL+ +
Sbjct: 537 RKEEIIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLTKI 596

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 597 DPETIAQASRIPGISPSDVNVLLV 620


>gi|300727531|ref|ZP_07060922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bryantii B14]
 gi|299775234|gb|EFI71835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bryantii B14]
          Length = 623

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/623 (40%), Positives = 366/623 (58%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVIGGGHAGCEAAAASANMGAKTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  + +  NL + Q + 
Sbjct: 64  LGGQMGLVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTVLDNTPNLKIWQDQA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +       +   ++++T GTFL G++HIG+  +  GR  +   ++   
Sbjct: 124 DKLLVENGEAIGVHTIWGVELYAKSIIVTAGTFLNGLMHIGRKMVEGGRCAEPAVHNFTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  ++   + R+KTGTP R+D +++ ++  + Q  D     FS+M      +Q+ C  T 
Sbjct: 184 SITRWGITSARMKTGTPVRIDKRSVHFEDMDVQDGDSDFHQFSYMGPHRVLQQLPCWTTY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H  + E +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +T+ 
Sbjct: 244 TNKEVHDTLKEGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGEDTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P ++Q   IR I     V I RPGYAIEYDY +P +L  +LE+K I GLF
Sbjct: 304 MYLNGFSSSMPMDVQLNAIRKIRAFRDVEIYRPGYAIEYDYFDPTQLKHSLESKIIKGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG +AGIN+A   N  +     R +SYIGV+IDDL +KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGTIAGINAAIYCNNGEPFIMKRDESYIGVLIDDLVTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT     LG     R   + +  Q  + L    + + + 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTEKAYHLGIAKRDRYDWWIQKKQAVDELIQFCEQMPIK 483

Query: 485 SKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSL-------V 532
           +K+++S     +  G T         + ++ P  ++QNL  I P  ++   +       +
Sbjct: 484 AKDINS---QLEALGTTPLRAGCKLIDLIARPHLNLQNLAEIIPALKEKLHMPENRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ I A+++   E   I   F+Y+ L  +S E ++KL+ + P  L
Sbjct: 541 AEAAEIKMKYKGYIEREKIVAEKMHRLENIKIKGRFNYAELHEISTEGRQKLTKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLLGR 623


>gi|15828724|ref|NP_326084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pulmonis UAB CTIP]
 gi|21263679|sp|Q98QV8|MNMG_MYCPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14089666|emb|CAC13426.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Mycoplasma pulmonis]
          Length = 611

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/616 (41%), Positives = 361/616 (58%), Gaps = 17/616 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI +++DVIVIGGGHAG EA    AK+    ALIT     IG+M CNP+IGG  KG + +
Sbjct: 1   MIRKNFDVIVIGGGHAGVEATFALAKMNLKVALITIYKDKIGAMPCNPSIGGPAKGIITK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+ G  AD A IQ ++LN  KGP+VR  R Q D+E Y   + +++L  EN+ + 
Sbjct: 61  EIDALGGVQGYYADKAMIQVKMLNESKGPSVRAIRAQIDKEKYSEIIVKDLLQNENVTIF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +        E + I  + ++ N  I  + VV+TTGT++   I  G      G  G+    
Sbjct: 121 EDFATDLIVENDQIVGVELEKNKTISSNLVVMTTGTYMNSRILRGSDIEHTGPNGEKTGI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +  F+  RLKTGTP R+   +I + K E++  D     FS  ++   ++QI C
Sbjct: 181 GLSKALERLGFELIRLKTGTPPRIYSDSIDFSKVEEEVLDVNGYVFSPRSNVKIDKQIHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH+II +NI  SA+YS  I+  GPRYCPS+EDKI++F ++  HQIF EPE  
Sbjct: 241 YLTYTNEKTHKIIQDNINKSAMYSQLIEGTGPRYCPSVEDKIMKFADKERHQIFFEPETS 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D++Y NG+ST+ P E+Q Q ++TIPGLE   +   GYAIEYD INP +L  +LE+KKI
Sbjct: 301 RQDIMYINGLSTSFPVEVQKQIVKTIPGLENARVKIWGYAIEYDAINPLQLKKSLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAAAQGL+AGIN+  K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 KGLFLAGQINGTSGYEEAAAQGLIAGINAGLKFKGEDEIVIQRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DN D RL   G+K   I    Q+ + K +++Y  +   ++ 
Sbjct: 421 QEPYRMLTSRAEYRLLLRNDNVDIRLAHYGLKAHLIS---QQDYQKILEKYKKIDEKIEE 477

Query: 481 LVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L        S+   F Q  K       ++ L+ PD    +L       + F  L    + 
Sbjct: 478 L---KTKFVSSKTDFAQKYKIENGISYFQALTRPDIEPSDLI------KDFEFL--NEMT 526

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+     Y  +Q   A +++  E   IP+  DYS +  L+NE +EK + ++P  + QAS+
Sbjct: 527 IQIRLEGYIKKQNNAAAKMERLENLKIPEKIDYSQILNLANEAREKFNKIRPQTIGQASR 586

Query: 598 IEGMTPAALNLLLIYI 613
           I G+ PA + +LL Y+
Sbjct: 587 ISGINPADIQMLLFYL 602


>gi|205831495|sp|Q2NJ23|MNMG_AYWBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 618

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/618 (40%), Positives = 369/618 (59%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG E+A + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDSIVIGAGHAGIESALILAK-KHNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D A IQ ++LN  KGPAVR  R Q D+  Y   +   + +  NL +++G V 
Sbjct: 62  GGIMAKATDLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIILEILQNTPNLTLLEGLVN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +KN +  + + D   I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 122 NLIIQKNQVQGVCLIDGRKINAKTVIITTGTYLASQILIGDTKKASGPNGVPTTYGISTQ 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+  RLKTGTP R+   +I + +T+ Q  D     F F+T + T R Q  C +T 
Sbjct: 182 LKEIGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQTFGFLTPQTTKRPQEPCFLTH 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L  + 
Sbjct: 242 TNQTTHQVIRKHLNQSAMYGGYVEGIGPRYCPSIEDKVVRFCDKNSHQIFIEPESLYLNE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LF
Sbjct: 302 MYLQGLSTSMPQHVQHEILKTIPGLQNAKITKYAYAIEYDAFNPNQLKHSLETKKIQNLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL--RSLLKSLV 482
           R+ TSRAE+R+ LR DNAD RL   G +LG I ++    F     + N L  +S    ++
Sbjct: 422 RLLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDKKDYNSFQNKKAKINLLLEKSKNYEIL 481

Query: 483 LTSKNLS----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           + S NLS      S S    G+  T  + +  P+ +   L     +  K    + E+++I
Sbjct: 482 VNSDNLSYLKQQNSASL---GEKTTLAQLIKRPELNFCTLQHFLQE--KADKTIYEQVEI 536

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  +   EA+++   E++ IP   +Y+ +  LS E KEKL ++KP  L QA++I
Sbjct: 537 QIKYEGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAKEKLDLIKPQTLGQATRI 596

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+    +++LL+Y++K+
Sbjct: 597 LGVNQVDISILLVYLEKH 614


>gi|85057733|ref|YP_456649.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789838|gb|ABC65570.1| glucose inhibited division protein A [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 634

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/618 (40%), Positives = 369/618 (59%), Gaps = 13/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG E+A + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 19  YDSIVIGAGHAGIESALILAK-KHNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D A IQ ++LN  KGPAVR  R Q D+  Y   +   + +  NL +++G V 
Sbjct: 78  GGIMAKATDLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIILEILQNTPNLTLLEGLVN 137

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +KN +  + + D   I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 138 NLIIQKNQVQGVCLIDGRKINAKTVIITTGTYLASQILIGDTKKASGPNGVPTTYGISTQ 197

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+  RLKTGTP R+   +I + +T+ Q  D     F F+T + T R Q  C +T 
Sbjct: 198 LKEIGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQTFGFLTPQTTKRPQEPCFLTH 257

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L  + 
Sbjct: 258 TNQTTHQVIRKHLNQSAMYGGYVEGIGPRYCPSIEDKVVRFCDKNSHQIFIEPESLYLNE 317

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LF
Sbjct: 318 MYLQGLSTSMPQHVQHEILKTIPGLQNAKITKYAYAIEYDAFNPNQLKHSLETKKIQNLF 377

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPY
Sbjct: 378 LAGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPY 437

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL--RSLLKSLV 482
           R+ TSRAE+R+ LR DNAD RL   G +LG I ++    F     + N L  +S    ++
Sbjct: 438 RLLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDKKDYNSFQNKKAKINLLLEKSKNYEIL 497

Query: 483 LTSKNLS----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           + S NLS      S S    G+  T  + +  P+ +   L     +  K    + E+++I
Sbjct: 498 VNSDNLSYLKQQNSASL---GEKTTLAQLIKRPELNFCTLQHFLQE--KADKTIYEQVEI 552

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  +   EA+++   E++ IP   +Y+ +  LS E KEKL ++KP  L QA++I
Sbjct: 553 QIKYEGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAKEKLDLIKPQTLGQATRI 612

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+    +++LL+Y++K+
Sbjct: 613 LGVNQVDISILLVYLEKH 630


>gi|313204555|ref|YP_004043212.1| glucose inhibited division protein a [Paludibacter propionicigenes
           WB4]
 gi|312443871|gb|ADQ80227.1| glucose inhibited division protein A [Paludibacter propionicigenes
           WB4]
          Length = 624

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/622 (41%), Positives = 373/622 (59%), Gaps = 14/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGNEAACAAANMGSKTLLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D + IQFR+LN  KGPA+  PR+Q+DR  +       I +  NL V Q  V 
Sbjct: 65  GGQMGIITDRSAIQFRMLNRSKGPAMWSPRSQSDRHQFIQHWISTITNIPNLYVWQDTVK 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ ++       R  +VVLT GTFL G++H GK ++  GR+ +  S  +   
Sbjct: 125 ELVIENGEVTGLISALGVHFRAKSVVLTAGTFLGGLMHFGKNQLVGGRISEPASFGITEQ 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
                F T R+KTGTP R+DG++I + K  +Q  +     FSF+ + K   +Q  C IT 
Sbjct: 185 LKSIGFTTDRMKTGTPCRIDGRSIDFSKMSEQKGENDFHKFSFLEEAKRELKQESCWITN 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH  + + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG+++  
Sbjct: 245 TNQTTHDELRKGLADSPLFNGQIQSIGPRYCPSIETKIVTFADKISHQLFLEPEGVDSQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG S++LP  +Q   I TI GLE   + RPGYAIEYD+ +P +L  TLETK+I  LF
Sbjct: 305 YYLNGFSSSLPLRVQIDAIHTIQGLENAQLFRPGYAIEYDFFDPTQLKHTLETKRIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+            +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCMGGKEFTLARNEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL--- 481
           RMFTSRAEYR+ LR D+AD RLT  G ++G     R ++    I++ N L   +K+    
Sbjct: 425 RMFTSRAEYRLILRQDDADVRLTGKGYEIGLATNNRFQQLNTKIEKQNILTEFIKNYSIK 484

Query: 482 -VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSL------VI 533
               ++ L+S + S  + G   +  + +  P  SI++L    P  + K  ++      ++
Sbjct: 485 PAFINEFLASRNSSELKHGCKLS--DLVLRPQLSIEDLSEAIPALKEKIEAIGSRKEEIV 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A +++  E   I    DY+++ +LS E ++KLS + P  + 
Sbjct: 543 EATEVLLKYEGYIEREKLIADKLQRLEHINIRGRIDYNTIQSLSTEARQKLSKIDPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 603 QASRIPGISPSDVNILLVLLGR 624


>gi|298484266|ref|ZP_07002430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D22]
 gi|298269591|gb|EFI11188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D22]
          Length = 628

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/623 (43%), Positives = 374/623 (60%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDARSVHFDQMETQAGECDFHKFSFMNTSTHHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGLVAGIN+    +  +    +R ++Y GV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLVAGINAHINCHGGEAFTLARDEAYTGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK--RFAKYIQE--YNFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   + R +  R  K   E   +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKKDRYQLVRSKKEAVEQIVSFARNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALEKIGTTPLRQGCKL---IEILNRPQVTIENIIEHVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|218258581|ref|ZP_03474924.1| hypothetical protein PRABACTJOHN_00579 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225351|gb|EEC98001.1| hypothetical protein PRABACTJOHN_00579 [Parabacteroides johnsonii
           DSM 18315]
          Length = 625

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/626 (41%), Positives = 366/626 (58%), Gaps = 19/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA +A LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAASANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGE 123
           L G MG V D   IQFR+LN  KGPA+  PR+Q+DR  + +   R IL    NL + Q  
Sbjct: 64  LGGYMGIVTDRTAIQFRMLNQSKGPAMWSPRSQSDRARF-IECWRGILENLPNLYIWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N I  +           +VVLT GTFL G++HIG+ +I  GR+ +  +  L 
Sbjct: 123 VRELLLDGNTICGVKTDMGVEFHAKSVVLTNGTFLNGLMHIGRTQIRGGRIAEPAAFGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
              +     + R+KTGTP R+D +++ +D+  +Q  +     FS+M T     +Q+ C  
Sbjct: 183 EQLVSLGIKSERMKTGTPVRIDARSVHFDEMAEQPGENDFHKFSYMDTSHRVLKQLSCWT 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN   H ++ E +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T
Sbjct: 243 TFTNEACHAVLREGLPDSPLYNGQIRSIGPRYCPSIETKIVTFADKPQHQLFLEPEGETT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP EIQ + ++ IP    + I RPGYAIEYD+ +P +L   LETK+I  
Sbjct: 303 QEYYLNGFSSSLPLEIQLRALQQIPAFRDIQIYRPGYAIEYDFFDPTQLHHNLETKQIRN 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA  QGLVAGIN+    +  +     R ++YIGV+IDDL +KGV E
Sbjct: 363 LFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGEPFVLGRDEAYIGVLIDDLVTKGVDE 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYRI LR D+AD RLT     LG   + R     +     + + +   +  
Sbjct: 423 PYRMFTSRAEYRILLRQDDADMRLTEKSYALGLAKQDRYDLLNEKKTSRDAIIAFAANYS 482

Query: 483 LTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDAR--------KFS 529
           +  + ++S     +  G T  A+     E +  P  +++N+  + P  R           
Sbjct: 483 IKPQYINS---GLETLGTTPLAHGCKLIELIPRPQITLENIAELVPAFRAELDKVPVSRK 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P
Sbjct: 540 EEIIEAAEILIKYSGYIRREQIIADKINRLENIHIKGKFDYNSIQSLSTEARQKLTRIDP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QAS+I G++P+ +N+LL+ + +
Sbjct: 600 DTIAQASRIPGISPSDINILLVLLGR 625


>gi|167764036|ref|ZP_02436163.1| hypothetical protein BACSTE_02419 [Bacteroides stercoris ATCC
           43183]
 gi|167698152|gb|EDS14731.1| hypothetical protein BACSTE_02419 [Bacteroides stercoris ATCC
           43183]
          Length = 638

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 274/631 (43%), Positives = 379/631 (60%), Gaps = 34/631 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 13  YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  + +   REIL    NL + Q  V
Sbjct: 73  GGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKF-IWTWREILENIPNLHIWQDTV 131

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +        R   VVLT GTFL G++H+G+  +P GRM +  S  L  
Sbjct: 132 QEILVENGEVTGLTTVWGVTFRAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQLTE 191

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM + + + +Q+ C   
Sbjct: 192 SIARHGITYGRMKTGTPVRIDGRSVHYEDMEIQEGENDFHKFSFMNNGVRHLKQLPCWTC 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETHRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 252 FTNEETHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP +IQ   ++ IP    + I RPGYAIEYDY +P +L  TLETKKI  L
Sbjct: 312 ELYLNGFSSSLPMDIQIAALKKIPAFRDLVIYRPGYAIEYDYFDPTQLKHTLETKKIKNL 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 372 FFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG   E R      KR A     ++ + Y+ 
Sbjct: 432 YRMFTSRAEYRILLRMDDADMRLTERAWKLGLAKEDRYELLKSKREAVTSIIEFTRSYSM 491

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL- 531
             +L+  ++   + L +T +  +Q  K     + ++ P  +++N+   +    R+   + 
Sbjct: 492 KPALINPVL---EQLGTTPL--RQGCKL---VDLINRPQVTLENMAEHVSAFRRELDKIT 543

Query: 532 -----------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                      ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E 
Sbjct: 544 EQDKVADRRDEIVEAAEILIKYEGYIGRERIIADKLARLESIKIKGRFDYNSIQSLSTEA 603

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           ++KL  + P  + QAS+I G++P+ +N+LL+
Sbjct: 604 RQKLVKIDPETIAQASRIPGVSPSDINVLLV 634


>gi|308804970|ref|XP_003079797.1| GLUCOSE INHIBITED DIVISION PROTEIN A (ISS) [Ostreococcus tauri]
 gi|116058254|emb|CAL53443.1| GLUCOSE INHIBITED DIVISION PROTEIN A (ISS) [Ostreococcus tauri]
          Length = 920

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/606 (44%), Positives = 366/606 (60%), Gaps = 52/606 (8%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           TIG MSCNP++GGLGKG LVRE+DALDGLMGR+ADA+GIQFRVLN  KGPAVRG R Q D
Sbjct: 314 TIGEMSCNPSVGGLGKGTLVREVDALDGLMGRIADASGIQFRVLNSSKGPAVRGARAQMD 373

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           RELY+    R +     L+V   E  G       +  +++     +R  TVV+TTGTFL 
Sbjct: 374 RELYKKEALRLVSGIGGLEVSSNEGGGR------VRGVMLDTGRALRSRTVVITTGTFLN 427

Query: 160 GVIHIGKLKIPAGRMGDS-----------PSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
           GV+HIG  ++ AGR+ ++            ++SL  +     FD GR+KTGTP RLDG +
Sbjct: 428 GVLHIGSKRVVAGRLANASTENADVQAGKAAHSLAKTLYGVGFDMGRMKTGTPPRLDGNS 487

Query: 209 IIWDKTEKQFADERLIPFSFMTD---------KITNRQIECGITRTNLETHRIIMENIKH 259
           I W   + Q  DE  IPF+F +          + T  QI C  T T  ET + I    K 
Sbjct: 488 IDWAACQPQPGDELPIPFTFTSSSRRVGAEPWRPTAPQIMCHSTYTTPETEKFIAAAPKS 547

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
                 +     PRYCPSIE K+ RF  RN H+++LEPEGLNT VVYPNGI+  L  ++Q
Sbjct: 548 KYELDMEGSPTTPRYCPSIESKVRRFPGRN-HRVWLEPEGLNTSVVYPNGITNNLEPDLQ 606

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
            + +RTIPGLEKV+I++PGY +EYDY++P+EL   LETKK+ GLFLAGQINGTTGYEEAA
Sbjct: 607 VKMVRTIPGLEKVDILKPGYGVEYDYVDPRELKINLETKKVRGLFLAGQINGTTGYEEAA 666

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           AQG++AG N+A  S   +     R  SY+GV++DDLTS+G  EPYRMF+SR EYR+S+R 
Sbjct: 667 AQGIIAGANAA--STDGEEFILPRYSSYLGVLVDDLTSRGTSEPYRMFSSRVEYRLSIRS 724

Query: 440 DNADNRLTPIGMKLGCIGERRQ----------KRFAKYIQEYNFLRSLLKS------LVL 483
           DNAD RLT +G + G +   R           K+ ++ +   + L S  +S      +  
Sbjct: 725 DNADLRLTELGERFGLVSAERARAGARRSALVKQASEALDAISLLPSRWQSYAPDLPIAK 784

Query: 484 TSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             + LS++++    +  D   R A + L   D  +Q L ++  + R       E   IE+
Sbjct: 785 HGRPLSASNMLSQRWDIDEILRAATDALGASDARVQVLHAVNGEDRS----AFECAAIEA 840

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  + ++I+ EE+ +IP  FDYS++  LS E +EKL  ++P    +AS+I G
Sbjct: 841 YYRPYVERQAQDIEDIRREEELVIPDAFDYSTIDNLSLEDREKLEAVRPTTFARASRISG 900

Query: 601 MTPAAL 606
           +TPAAL
Sbjct: 901 VTPAAL 906


>gi|110004173|emb|CAK98511.1| probable glucose inhibited division protein a [Spiroplasma citri]
          Length = 626

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/630 (39%), Positives = 364/630 (57%), Gaps = 18/630 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA+  AA++   T L+T     I  M CNP+IGG  KG +VREID
Sbjct: 2   KKYDVIVIGAGHAGVEASLAAARMQKKTLLVTLHKDKIALMPCNPSIGGPAKGIVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M + ADA  +Q ++LN  +GPAV   R Q+D+  Y   MQ+ I  Q+NLD+ +G 
Sbjct: 62  AIGGEMAKAADATALQMKLLNSSRGPAVWALRAQSDKIQYAKYMQKVIEKQDNLDLYEGA 121

Query: 124 VAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V     +  N    ++++D +      V+LTTGT+++ ++  G  K   G  GD  +  L
Sbjct: 122 VQSLLVDDDNNCYGVMLKDQTQFFAKKVILTTGTYMQSLVLQGMTKKAEGPDGDITTAGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
                   F+  RLKTGTPAR+   +I + K + +   +  + FS+ T   T    Q  C
Sbjct: 182 STQLKHLGFELFRLKTGTPARVLNTSIDYSKAQPEQGSDLQLAFSYSTKTFTPLEEQELC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  +  +TH I+  N+  SA+YSG++K  GPRYCPS EDKIVRF ++  HQIFLEPE  
Sbjct: 242 WLIHSTPKTHSIVQNNLTASAMYSGNVKGTGPRYCPSFEDKIVRFADKPRHQIFLEPESK 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + + +Y  G ST++P ++Q + +R++PG E V +++  YAIEYD + P +L  TLETKKI
Sbjct: 302 SLNTIYVQGFSTSMPIDVQEKMLRSLPGFENVEVLKWAYAIEYDAVVPTQLKHTLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAA QGL+AGIN+    ++ +     R  +YIGV+IDDL +KG 
Sbjct: 362 KNLYTAGQINGTSGYEEAACQGLMAGINAVLSIDQKEPFILRRDQAYIGVLIDDLITKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DN++ RL     +LG I ++    +   +Q YN +  LLK 
Sbjct: 422 EEPYRLLTSRAEYRLLLRNDNSEERLKNYAYQLGLIDQKSWTEYQNNVQSYNEVMQLLKE 481

Query: 481 LVLTSK--------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
              T+K        NL  T I+ +  G     Y  L  P+  ++ L    P      S +
Sbjct: 482 TYFTAKSPLIQKLANLGVTKITERISG-----YNLLKRPNIELKYLEDELPPLNNLKSFL 536

Query: 533 IERLQIESSYAAYTGR-QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            + L I   +  Y  + Q I  K IK E K LIP + +Y  +  L+ E +EK   ++P +
Sbjct: 537 KQNLLINIRFEGYIKKEQEIALKTIKLENK-LIPANLNYDLVDNLALEAREKFKKIRPIS 595

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           + QA++I G+ PA + +LL ++KK  +  N
Sbjct: 596 IGQANRISGINPADIQMLLFHLKKMELDAN 625


>gi|288928687|ref|ZP_06422533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329671|gb|EFC68256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 623

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/627 (40%), Positives = 370/627 (59%), Gaps = 16/627 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI R YDV+VIGGGHAGCEAA  AAKLGA T L+T   + I  MSCNPA+GG+ KG +VR
Sbjct: 1   MIFR-YDVLVIGGGHAGCEAACAAAKLGAKTCLVTMDMNKIAQMSCNPAVGGIAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG + D+  IQFR+LN  KGPAV  PR Q DR  +    +  + S E LD+ 
Sbjct: 60  EVDALGGEMGIITDSTSIQFRMLNKGKGPAVWSPRAQCDRAKFITKWRETLDSTEGLDIW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +      E  +   +     +  R  ++V+T GTFL G++H+GK++IP GR  +    
Sbjct: 120 QDQADELLVEDGMAVGVRTLWGAEFRAKSIVVTAGTFLNGLMHVGKVQIPGGRCAEPAVY 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
               S  +      R+KTGTP R+D +T+ +++ E+Q  +     FS+M    T  Q+ C
Sbjct: 180 RFSESIARHGITVDRMKTGTPVRIDARTVHFEEMERQDGEIDFHQFSYMPTPRTLTQLPC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               T  E H+ +   I  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG 
Sbjct: 240 WTFYTTQEAHQALQAGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGE 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y NG S+++P ++Q   +R IP L      RPGYAIEYDY +P  L  +LE+K +
Sbjct: 300 NTAEMYLNGFSSSMPLDVQLNALRKIPALRDAKAYRPGYAIEYDYFDPTLLHASLESKVV 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQ+NGTTGYEEAA QGLVAGIN+A   ++ +     R +SYIGV+IDDLT+KGV
Sbjct: 360 KGLFLAGQVNGTTGYEEAAGQGLVAGINAAIACSRGEPFVMKRDESYIGVLIDDLTTKGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G      + R+  ++++   +  ++  
Sbjct: 420 DEPYRMFTSRAEYRILLRQDDADARLTERAYQIGLA---TRHRYDHWMEKKESIERIISF 476

Query: 481 LVLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKF------- 528
              TS   +  + + ++ G T         + ++ P  ++  L    P+ +         
Sbjct: 477 CETTSVKANDINAALERWGTTPLNGSAKLADLIARPQLNLLVLADAVPELKAAIAQIPNR 536

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I+  Y  Y  R+ I A +++  E   I   F+Y  L  +S E ++KL+ + 
Sbjct: 537 QEEIVEAAEIKMKYKGYIEREKIVADKMRRLENIRIKGHFNYEELHEISTEGRQKLARIN 596

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 597 PETLAQASRIPGVSPSDINVLLVLMNR 623


>gi|54019972|ref|YP_115518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae 232]
 gi|81170558|sp|Q602E7|MNMG_MYCH2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53987145|gb|AAV27346.1| glucose inhibited division protein A [Mycoplasma hyopneumoniae 232]
          Length = 619

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/611 (43%), Positives = 361/611 (59%), Gaps = 15/611 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDAL
Sbjct: 12  FDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+ G+++D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V+
Sbjct: 72  GGVQGKLSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLVS 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N+
Sbjct: 132 ELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSNN 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T T
Sbjct: 192 LKTLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTYT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D++
Sbjct: 252 TAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDIM 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETK++ GLF+
Sbjct: 312 YINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKRVKGLFM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPYR
Sbjct: 372 AGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLT 484
           M TSRAEYR+ LR DNAD R+    +K G I ++   +  AKY +    +  L K  V  
Sbjct: 432 MLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVSP 491

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSYA 543
              L+      K+  K +     +S+P+    N   I PD    +   V+ RL+      
Sbjct: 492 KDELAKKYNLEKRISKLK----LISWPNV---NFKDILPDFEFGYELTVMARLK------ 538

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  EA+++   EK LIP + +Y  +  LS+E  +K   ++P  + +AS+I G+ P
Sbjct: 539 GYIQKQNSEAQKMIRLEKLLIPGELNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNP 598

Query: 604 AALNLLLIYIK 614
           A + +LL +IK
Sbjct: 599 ADIQMLLFHIK 609


>gi|53711391|ref|YP_097383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis YCH46]
 gi|265764837|ref|ZP_06093112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_16]
 gi|81170517|sp|Q650H5|MNMG_BACFR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52214256|dbj|BAD46849.1| glucose-inhibited division protein A [Bacteroides fragilis YCH46]
 gi|263254221|gb|EEZ25655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_16]
          Length = 625

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/628 (43%), Positives = 376/628 (59%), Gaps = 33/628 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  L  
Sbjct: 124 KEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKTQLPGGRMAEPASYKLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C   
Sbjct: 184 SIAKHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI  L
Sbjct: 304 ELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG + E R      KR A      + + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRNYSI 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---------- 523
             +L+   +   +NL +T +  +Q  K     + ++ P  +I+N+    P          
Sbjct: 484 KAALINDAL---ENLGTTPL--RQGCKL---IDLINRPQITIENISEYVPAFKRELDKIT 535

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           D RK    ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++K
Sbjct: 536 DERK--EEILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQK 593

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLI 611
           L  + P  + QAS+I G++P+ +N+LL+
Sbjct: 594 LKKIDPETIAQASRIPGVSPSDINVLLV 621


>gi|41058550|gb|AAR99255.1| glucose-inhibited division protein A [Candidatus Blochmannia vafer]
          Length = 595

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/586 (43%), Positives = 364/586 (62%), Gaps = 21/586 (3%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNP+IGG+GKGHLV+EIDA+ G+M    D +GIQFR+LN  KG AV+  R QAD+
Sbjct: 1   LGQMSCNPSIGGIGKGHLVKEIDAMGGIMANAIDRSGIQFRILNSSKGAAVKSTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
            LY+  +++ +  Q  L ++Q  V       N +  +++ +  M I   +V+LTTGTFL 
Sbjct: 61  ILYKQIIRQSLEDQSYLYILQASVEDVIIRHNKVMGVIIPNIEMKIFARSVILTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNS-FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G I+IG      GR GD  S+SL +    +      RLKTGT  R+  K + ++   +Q 
Sbjct: 121 GKIYIGMNNFEGGRAGDLESSSLLSRRLQELSLKVNRLKTGTSPRIYAKGVNFECMVEQH 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSF+ + K   +QI C IT TN +TH II  N+ HS +Y+G I    PRYCPS
Sbjct: 181 SDCPIPVFSFIGSSKQHPKQIPCYITHTNSKTHDIIRSNLHHSPVYAGLINGIPPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK++RF +++ HQIFLEPEGL T  +Y NG++T+LP  +Q Q I++I GLE   I+RP
Sbjct: 241 IEDKVIRFPDKDTHQIFLEPEGLTTSEIYLNGVATSLPFNVQIQIIQSIKGLENARILRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ NP +L  TLE+K ISGLFL+GQINGTTGYEEAAAQGL++GIN+AR +    
Sbjct: 301 GYAIEYDFFNPIDLKLTLESKFISGLFLSGQINGTTGYEEAAAQGLLSGINAARYAQNKT 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  SY+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I 
Sbjct: 361 EWYPKRDQSYLGVLVDDLCTHGTTEPYRMFTSRAEYRLSLREDNADLRLTDIARQLGLIT 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLK----------SLVLTSKNLSSTSISFKQDGKTRTAYEF 507
           + R + F   +++ N  R   +          + ++   ++    +  K +G+       
Sbjct: 421 DNRWRIFC--VKQENIEREFQRFRNTYIFPNTTDIIKLNSILKVPLMNKVNGEDLLKRPE 478

Query: 508 LSYPDFSIQNLFS-ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
           ++Y   S  + F  +  D +     V E+++I+  YA Y  RQ  E       E  L+P 
Sbjct: 479 INYATLSQLSTFKPVISDNQ-----VYEQIEIQIKYAGYLNRQKEEIDRNLRNEDTLLPF 533

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
           D +Y+++  LS E+ EKL+  +P+++ QAS+I G+TP A+++LL++
Sbjct: 534 DINYNNIVGLSTEVVEKLNYCRPYSVGQASRISGITPVAISILLVW 579


>gi|160888678|ref|ZP_02069681.1| hypothetical protein BACUNI_01095 [Bacteroides uniformis ATCC 8492]
 gi|317478017|ref|ZP_07937199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_1_36]
 gi|156861992|gb|EDO55423.1| hypothetical protein BACUNI_01095 [Bacteroides uniformis ATCC 8492]
 gi|316905806|gb|EFV27578.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_1_36]
          Length = 624

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 274/625 (43%), Positives = 373/625 (59%), Gaps = 28/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +V           VVLT GTFL G++H+G+  +P GRM +  S  L  
Sbjct: 124 QEILVENGEITGVVTLWGVTFHAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  K     GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C   
Sbjct: 184 SIAKHGITFGRMKTGTPVRIDGRSVHYEDMEIQDGECDFHKFSFMDTHVRHLKQLPCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEAHRILQEGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP  IQ   ++ IP    + I RPGYAIEYD+ +P +L  TLETK I  L
Sbjct: 304 ELYLNGFSSSLPMNIQIAALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKNIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAAGQGIMAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK----------RFAKYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG   E R K          R   + + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTEKAWKLGLAKEERYKLLTEKREAVNRIIDFARNYSM 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL- 531
             +L+  ++   + L +T +  +Q  K     + ++ P  +I+N+   +    R+   + 
Sbjct: 484 KPALINPVL---EQLGTTPL--RQGCKL---IDLINRPQITIENIAEHVSAFKRELDKIS 535

Query: 532 -----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  
Sbjct: 536 DRKEEIVEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLMK 595

Query: 587 LKPFNLLQASKIEGMTPAALNLLLI 611
           + P  + QAS+I G++P+ +N+LL+
Sbjct: 596 IDPETIAQASRIPGVSPSDINVLLV 620


>gi|237716852|ref|ZP_04547333.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D1]
 gi|262405623|ref|ZP_06082173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_22]
 gi|294644432|ref|ZP_06722195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294810426|ref|ZP_06769083.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229442835|gb|EEO48626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D1]
 gi|262356498|gb|EEZ05588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_22]
 gi|292640267|gb|EFF58522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294442391|gb|EFG11201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085942|emb|CBK67465.1| glucose-inhibited division protein A [Bacteroides xylanisolvens
           XB1A]
          Length = 628

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/623 (42%), Positives = 372/623 (59%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  L  S
Sbjct: 125 ELLVENGEATGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ + Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDARSVHFDQMDTQAGECDFHKFSFMNTSTHHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG   E R    + +     Q  +F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVKSKKEAVEQIVSFARNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S     
Sbjct: 485 PALINDALEKIGTTPLRQGCKL---IEILNRPQVTIENITEYVPAFQRELEKATSSDQDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|313885557|ref|ZP_07819307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619287|gb|EFR30726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 638

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/621 (41%), Positives = 373/621 (60%), Gaps = 13/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++   T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGSEAALAAARMDCKTLLLTISLEMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y  +M+  I   + L++ QG V
Sbjct: 68  LGGEMGRNIDRTSIQTRMLNTSKGPAVQALRAQADKAAYARSMKAVIEDTDGLELHQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +     ++     VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 EELIVEDGQVKGVRTNTGAIYHSQAVVLTAGTSSRGKIIIGELKYSSGPNNTLPSIKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQ-IECGI 242
           + ++   +  R KTGTP R+   +I +D+TE Q  D     FS+ T D+  N +   C +
Sbjct: 188 NLLELGIELARFKTGTPPRIHYDSIDFDQTEIQPGDIEPNHFSYETPDEAFNPESTPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  + ++SG ++  G RYCPSIEDKIVRF ++  HQIF+EPEGL T
Sbjct: 248 THTNEKTHEIIRKNLHRAPMFSGMVEGVGARYCPSIEDKIVRFSDKPRHQIFIEPEGLET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G+ST++PEEIQ   + ++ G+E+  ++RPGYAIEYD + P +L   LE KK+ G
Sbjct: 308 KEMYVQGLSTSMPEEIQLDMLHSVKGMERARLMRPGYAIEYDVVIPHQLNLNLEVKKLPG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A K    D     R ++YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGINAALKVQGKDPFILRRDEAYIGVMIDDLVTKGTTE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYR+ TSRAE+R+ LR DNAD RLT  G ++G IG+   +R+A Y  ++N ++  +K L 
Sbjct: 428 PYRLLTSRAEFRLLLRHDNADLRLTERGRQIGLIGD---ERYAAYQAKFNLVQDEIKRLE 484

Query: 482 -VLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIE 534
            +  + N    S  F + G         A E L  P+   ++L ++ PD  +       +
Sbjct: 485 GLRLTPNTPGLSEYFDRVGSAPLKDGILASELLKRPEIKYRDLVALLPDRDQVLDRQEGQ 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  YA Y  + + +   +   E + IP D D+ ++  L+NE +++L ++ P  L Q
Sbjct: 545 QVEIQIKYAGYIKKALRKVDRMAGMESKHIPHDIDWDAIGNLANEARDRLKLINPSTLGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS++ G+ PA + +L +Y+++
Sbjct: 605 ASRVSGVNPADIAILSVYLQQ 625


>gi|222099397|ref|YP_002533965.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Thermotoga neapolitana DSM 4359]
 gi|221571787|gb|ACM22599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/622 (41%), Positives = 373/622 (59%), Gaps = 17/622 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YD+IV+G GHAG EAA  +A++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDIIVVGAGHAGIEAALASARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V     EK     + + DN  I      V++TTGTFLRG I IG+   PAGRMG+ P+ 
Sbjct: 126 IVERLLVEKG--KVVGVVDNYGIDYLGKAVIITTGTFLRGKIFIGRSVFPAGRMGEFPAA 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF ++ K+  +   
Sbjct: 184 KLTQSLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFSEPKVLPKDYP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           C +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+++F ++  HQ+F+EP
Sbjct: 244 CWLTRTNPETHNIIRQYLEFSPLYGTVKLIEGVGPRYCPSIEDKVIKFRDKESHQVFVEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T+  Y NG+ST+LP E Q + IR++ GLE   I RP YAIEYDYI+P++L+PTLE+
Sbjct: 304 EGRDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIITRPAYAIEYDYIDPRQLYPTLES 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  LF AGQ+NGT+GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +
Sbjct: 364 KIVENLFFAGQVNGTSGYEEAAGQGLIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +GV EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +        
Sbjct: 424 RGVDEPYRLLTSRAEYRLLLRHDNAHLRLAKHGYRVGLIPKWFYEKVLSLERRVKEEIER 483

Query: 478 LKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           LK +V+   +      ++  +   K+     + Y+ L  P+ S + L    P+       
Sbjct: 484 LKKVVIKPSDRINDILMAEGTTPLKE---ATSLYQLLKRPELSYEVLKRFDPNPID-DPE 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+++I   Y  Y  +   E    +  E   IP D DY  +P LS E ++KL  ++P +
Sbjct: 540 VAEQVEINVKYEGYIQKMFEEVAIFEKYESYEIPADIDYDVVPNLSTEARDKLKRIRPRS 599

Query: 592 LLQASKIEGMTPAALNLLLIYI 613
           + QA +I G+ P+ ++ L+IY+
Sbjct: 600 IGQAMRIPGINPSDISNLIIYL 621


>gi|253564501|ref|ZP_04841958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_2_5]
 gi|251948277|gb|EES88559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_2_5]
 gi|301161173|emb|CBW20711.1| putative glucose inhibited division protein A [Bacteroides fragilis
           638R]
          Length = 625

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/628 (43%), Positives = 376/628 (59%), Gaps = 33/628 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  L  
Sbjct: 124 KEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKNQLPGGRMAEPASYKLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C   
Sbjct: 184 SIAKHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI  L
Sbjct: 304 ELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG + E R      KR A      + + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRNYSI 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---------- 523
             +L+   +   +NL +T +  +Q  K     + ++ P  +I+N+    P          
Sbjct: 484 KAALINDAL---ENLGTTPL--RQGCKL---IDLINRPQITIENISEYVPAFKRELDKIT 535

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           D RK    ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++K
Sbjct: 536 DERK--EEILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQK 593

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLI 611
           L  + P  + QAS+I G++P+ +N+LL+
Sbjct: 594 LKKIDPETIAQASRIPGVSPSDINVLLV 621


>gi|270295024|ref|ZP_06201225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D20]
 gi|270274271|gb|EFA20132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D20]
          Length = 624

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/625 (43%), Positives = 373/625 (59%), Gaps = 28/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +V           VVLT GTFL G++H+G+  +P GRM +  S  L  
Sbjct: 124 QEILVENGEITGVVTLWGVTFHAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  K     GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C   
Sbjct: 184 SIAKHGITFGRMKTGTPVRIDGRSVHYEDMEIQDGECDFHKFSFMDIHVRHLKQLPCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEAHRILQEGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP  IQ   ++ IP    + I RPGYAIEYD+ +P +L  TLETK I  L
Sbjct: 304 ELYLNGFSSSLPMNIQIAALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKNIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAAGQGIMAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK----------RFAKYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG   E R K          R   + + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTEKAWKLGLAKEERYKLLTEKREAVNRIIDFARNYSM 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL- 531
             +L+  ++   + L +T +  +Q  K     + ++ P  +I+N+   +    R+   + 
Sbjct: 484 KPALINPVL---EQLGTTPL--RQGCKL---IDLINRPQITIENIAEHVSAFKRELDKIS 535

Query: 532 -----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  
Sbjct: 536 DRKEEIVEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLMK 595

Query: 587 LKPFNLLQASKIEGMTPAALNLLLI 611
           + P  + QAS+I G++P+ +N+LL+
Sbjct: 596 IDPETIAQASRIPGVSPSDINVLLV 620


>gi|240047139|ref|YP_002960527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma conjunctivae HRC/581]
 gi|239984711|emb|CAT04683.1| tRNA uridine 5-carboxymethylaminomethyl modifi [Mycoplasma
           conjunctivae]
          Length = 613

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/618 (43%), Positives = 361/618 (58%), Gaps = 23/618 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ +D IV+GGGHAG EA    AK G   ALIT   + + SM CNP+IGG  KG + REI
Sbjct: 4   NKKFDAIVVGGGHAGVEAVFALAKKGLKVALITLSKNKLASMPCNPSIGGSAKGIITREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+  + AD A IQ ++LN  KGPAVR  RTQ D+E Y  A+   +    N+ + + 
Sbjct: 64  DALGGVQAKFADQAMIQIKILNESKGPAVRAIRTQIDKEKYSKAVLSSMKKLNNVFIFED 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +   +  +  Q N       V++TTGT+L   +  G   + +G  G   S+ L
Sbjct: 124 IVLELLVKNKKVYGVRSQKNGDFFAKAVIITTGTYLDSKVLRGSSSVSSGPDGQITSDQL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +K  FD  RLKTGTP R+   +I + + EK+      I FSF + K   +QI C +
Sbjct: 184 SKNLIKLGFDLQRLKTGTPPRIYTDSIDFSEVEKEDVPLLNINFSFSSKKRIKKQISCYL 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH IIM+N+  S++YSG IK  GPRYCPS+EDKIVRF  +  HQIF EPE    
Sbjct: 244 TYTSPKTHEIIMQNLDKSSMYSGLIKGIGPRYCPSVEDKIVRFSTKERHQIFFEPETKKQ 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D++Y NG+ST++PE++Q Q +++IPGL+   I + GYAIEYD INP EL P+LETKKI  
Sbjct: 304 DIMYINGLSTSMPEDVQIQMVKSIPGLKNARIAKFGYAIEYDAINPLELKPSLETKKIKS 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQINGT+GYEEAAAQGL+AGIN+ +K      I   R D YIGV+IDDL +KG  E
Sbjct: 364 LFMAGQINGTSGYEEAAAQGLIAGINAGQKIEGKRAIKILRNDGYIGVLIDDLVTKGTKE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF----LRSLL 478
           PYRM TSRAEYR+ LR DNAD R+     K G I    ++ + K IQ+Y      +  L 
Sbjct: 424 PYRMLTSRAEYRLILRNDNADIRMAKYAYKSGTI---TKEEYLKVIQKYRLIDKKISQLD 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQ 537
           K  V     L           K +     +S PD   ++   I  D    +  +V+ RL+
Sbjct: 481 KEFVSPKDELGKKYNVLNGISKLK----LISRPDTDYKD---IVKDFEFGYELMVLCRLK 533

Query: 538 IESSYAAYTGRQMIEA-KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
                  Y  +Q   A K I+ E  R IP+  +YS +  LS+E  +KL  +KP  + QAS
Sbjct: 534 ------GYIQKQNNAAQKMIRLEHLR-IPESLNYSEVANLSSEALDKLKKVKPKTIGQAS 586

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ PA + +LL ++K
Sbjct: 587 RISGINPADIQMLLFHLK 604


>gi|60679709|ref|YP_209853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis NCTC 9343]
 gi|81170516|sp|Q5LIY5|MNMG_BACFN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|60491143|emb|CAH05891.1| putative glucose inhibited division protein A [Bacteroides fragilis
           NCTC 9343]
          Length = 625

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/628 (43%), Positives = 376/628 (59%), Gaps = 33/628 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  L  
Sbjct: 124 KEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKTQLPGGRMAEPASYKLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  +   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C   
Sbjct: 184 SIAEHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI  L
Sbjct: 304 ELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG + E R      KR A      + + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRNYSI 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---------- 523
             +L+   +   +NL +T +  +Q  K     + ++ P  +I+N+    P          
Sbjct: 484 KAALINDAL---ENLGTTPL--RQGCKL---IDLINRPQITIENISEYVPAFKRELDKIT 535

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           D RK    ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++K
Sbjct: 536 DERK--EEILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQK 593

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLI 611
           L  + P  + QAS+I G++P+ +N+LL+
Sbjct: 594 LKKIDPETIAQASRIPGVSPSDINVLLV 621


>gi|303238024|ref|ZP_07324567.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella disiens FB035-09AN]
 gi|302481814|gb|EFL44866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella disiens FB035-09AN]
          Length = 625

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/626 (41%), Positives = 366/626 (58%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDV+VIGGGHAGCEAA  AA +GA   L+T   + I  MSCNPA+GG+ KG +VRE
Sbjct: 3   ITFKYDVLVIGGGHAGCEAATAAANIGAKVCLVTMDMNKIAQMSCNPAVGGIAKGQIVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DRE +    +R +   +NLD+ Q
Sbjct: 63  IDALGGQMGIVTDATAIQFRMLNRSKGPAVWSPRAQCDREKFISEWKRTLDHTDNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      +      +       +    +V+T GTFL G++HIG+ ++  GR  +   ++
Sbjct: 123 DQADELIVKNGKAIGVKTIWGIDLYAQAIVVTAGTFLNGLMHIGRKQVEGGRCAEPAVHN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++     R+KTGTP R+D +++ ++  E Q  +     FSF+ +     Q+ C 
Sbjct: 183 FAESIARWGIRKERMKTGTPVRIDKRSVHFEDMEAQPGESDYHQFSFIGNYRKLPQLPCW 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H I+   +  S +++G I+S GPRYCPSIE K+V F ++N H +FLEPEG++
Sbjct: 243 TCNTNEEAHEILRRGVADSPLFNGQIQSTGPRYCPSIETKLVTFPDKNTHPLFLEPEGVD 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P EIQ   +R IP L    + RPGYAIEYDY +P +L P+LE+K I+
Sbjct: 303 TNEMYLNGFSSSMPWEIQLAALRKIPALRDAKMYRPGYAIEYDYFDPTQLKPSLESKIIA 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG+VAGIN+A   +        R +SYIGV+IDDLT+KGV 
Sbjct: 363 HLFLAGQVNGTTGYEEAGGQGMVAGINAAMLCSGNQPFIMKRDESYIGVLIDDLTTKGVD 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL--- 478
           EPYRMFTSRAEYRI LR D+AD RLT    ++G      ++R+  +I + N +   +   
Sbjct: 423 EPYRMFTSRAEYRILLRQDDADARLTERAYEIGIA---TKERYDWWIIKKNHIERTIDYC 479

Query: 479 -KSLVLTSK-NLSSTSISFKQDGKTRTAYEFLSYPDFSIQ-------NLFSICPDARKFS 529
            K+ V   + N    SI       +    + ++ P  +I         L  I   A    
Sbjct: 480 NKNAVKPHEINGYLESIGSSPIRGSVKISDLIARPGVNIHALSEHISELKEIINAAPNRK 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E  +I+  Y  Y  R+ I A ++   E   I   FDYS++  LS E ++KL  ++P
Sbjct: 540 EEITEAAEIKIKYKGYIERERIFADKMHRLEDIKIKGHFDYSTIHDLSTECRQKLERIQP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++P+ +N+LL+ + +
Sbjct: 600 ETLAQASRIPGVSPSDINVLLVLMGR 625


>gi|226225436|ref|YP_002759542.1| glucose inhibited division protein A [Gemmatimonas aurantiaca T-27]
 gi|226088627|dbj|BAH37072.1| glucose inhibited division protein A [Gemmatimonas aurantiaca T-27]
          Length = 635

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/640 (40%), Positives = 378/640 (59%), Gaps = 35/640 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ GA  ALIT     +G +SCNPAIGG+ KG +VRE+DAL
Sbjct: 2   FDVIVIGGGHAGTEAAVAAARSGARVALITGALEQLGQLSCNPAIGGIAKGTVVREVDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R  D A +QFR+LN  KGPAV  PR Q DR LYR A+++ + +Q NL  +QG VA
Sbjct: 62  GGIMARATDMATVQFRMLNRGKGPAVWAPRAQCDRGLYRRAVRQLLEAQPNLVTMQGMVA 121

Query: 126 G--FNTEKNI-------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMG 175
              F+   ++       ++ +   +        VVLTTGTF RG +HIG   +I  GR G
Sbjct: 122 RLLFDDAGSLASGATRRVAGVETMEGRRFGARAVVLTTGTFGRGTMHIGTDTRISGGRAG 181

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           ++PS  L          T R KTGTP R+DG+++ + + ++Q ++  L  +S+     T 
Sbjct: 182 EAPSVHLGQQLDAEGLTTERFKTGTPPRIDGRSVDYTRFDRQESEIDLFDYSWSHFWTTP 241

Query: 236 R-----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           R           Q+ C +         +I ++I  SA+Y G I S GPRYCPS+EDK+V+
Sbjct: 242 RRTADGAMRSPEQMPCWVGWLEEAGTELIAKHINESAMYGGAIASRGPRYCPSVEDKVVK 301

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F ++  HQ+FLEPEG +T  +Y NG+ST+LP  +Q   +R++ GLE V + R GYAIEYD
Sbjct: 302 FPDKVRHQLFLEPEGHDTSELYVNGLSTSLPAPVQLAVLRSVHGLEDVRMTRAGYAIEYD 361

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Y  P +L+P+L ++ I GLF AGQ+NGTTGYEEA  QG++AG+N+AR + + + I   R 
Sbjct: 362 YYPPTQLWPSLGSRAIDGLFFAGQVNGTTGYEEAGGQGVMAGLNAARFTQEREPIVLGRE 421

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIGV+I+DLT++GV EPYR+FTSR+E+R+++R DNA +RL P+    G   +      
Sbjct: 422 SSYIGVLINDLTTRGVDEPYRLFTSRSEFRLTVRQDNALSRLAPVSEAAGLWQD------ 475

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSIS--FKQDGKTRT------AYEFLSYPDFSIQ 516
           A+    +  L ++ ++L L      S +I+    +   TR       A E     + ++Q
Sbjct: 476 AELEVLHARLGAVREALRLAEATSMSPAIADPILEAAGTRPLAHAVRAVELARRSEITLQ 535

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            LF       +     I   ++E  YA Y  R+ ++A  +  +   ++P   DY+++  L
Sbjct: 536 VLFDAAGVGAELPRDAIVGAELEIKYAGYFERERLQANRLVAQGAVVLPPTLDYAAMRTL 595

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           S E ++K   LKP  L QAS I G++PA L  L++ ++K+
Sbjct: 596 SIEARQKFERLKPGTLAQASAIPGISPADLQNLMLELRKH 635


>gi|153807190|ref|ZP_01959858.1| hypothetical protein BACCAC_01468 [Bacteroides caccae ATCC 43185]
 gi|149130310|gb|EDM21520.1| hypothetical protein BACCAC_01468 [Bacteroides caccae ATCC 43185]
          Length = 628

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 373/624 (59%), Gaps = 22/624 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + +  + +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWRERLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  L  S
Sbjct: 125 ELLVENGEVTGLVTVWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDARSVHFDQMETQDGECDFHKFSFMNTSTRHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ + +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILRDGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I  LF
Sbjct: 305 LYLNGFSSSLPMDIQIAALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKVIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG +AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGAIAGINAHINCHGGEEFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE-----YNFLRSLLK 479
           RMFTSRAEYRI LR D+AD RLT    KLG   E R  R  K  +E      +F R+   
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAYKLGLAKEDRY-RLMKSKKEAVEQIISFARNYSM 483

Query: 480 SLVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL--- 531
              L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K +S    
Sbjct: 484 KPALINDALEKIGTTPLRQGCKL---IEILNRPQVTIENIAEHIPAFQRELEKVTSANQD 540

Query: 532 ----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYSS+ +LS E ++KL+ +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSSIQSLSTEARQKLTKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|297567556|ref|YP_003686528.1| glucose inhibited division protein A [Meiothermus silvanus DSM
           9946]
 gi|296852005|gb|ADH65020.1| glucose inhibited division protein A [Meiothermus silvanus DSM
           9946]
          Length = 600

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/621 (41%), Positives = 365/621 (58%), Gaps = 34/621 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA++GA   L+T     IG M CNPA+GG GK  LV E+ A+
Sbjct: 4   YDVIVVGGGHAGIEAAWAAAQVGARVGLVTSNPERIGLMPCNPAVGGPGKSQLVAEVVAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG++ADA  I  RVLN  KGPAV+  R Q DR+ Y L  QR +L+   ++ I+ EVA
Sbjct: 64  GGLMGQLADATAIHTRVLNQSKGPAVQSLRVQVDRDAYALEAQRVLLAHPRIESIRAEVA 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++  D   IR S+VV+ +GTFL GV+  G+   PAGR G+ P+  L  S
Sbjct: 124 ALWVEGGELFGVLTVDGRQIRSSSVVIASGTFLSGVVWYGRQSRPAGRQGEPPARFLSES 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIW--------DKTEKQFADERLIPFSFMTDKITNRQ 237
                    R KTGTP R+   ++ +        D   + FA    IP    T + T + 
Sbjct: 184 IRAIGHRMLRFKTGTPPRIRADSVDYGVLEVVPPDVPPQTFAG---IPGPHATARPTWQ- 239

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
                TRT   THR+I EN+  S +Y GDI+  GPRYCPSIEDK++RF ++  H +F+EP
Sbjct: 240 -----TRTTEATHRLIQENLHLSPLYGGDIEGIGPRYCPSIEDKVIRFADKETHLLFVEP 294

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           +GL T  +Y  G S++LP ++Q + +RT+PG EK  I R  YA+EYD ++  EL   L++
Sbjct: 295 DGLETSELYLQGFSSSLPPQLQERMVRTLPGFEKAIIQRYAYAVEYDAVDATELTAGLQS 354

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQINGT+GYEEAAAQGLVAG+N+AR +   + I  SR   YIGV+I+DL  
Sbjct: 355 KRLPGLFTAGQINGTSGYEEAAAQGLVAGLNAARFARGQEEIRLSRESGYIGVLINDLVH 414

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G  EPYRM TSR E R+  R DNAD RL P+ ++ G    R +    K  ++Y  +++ 
Sbjct: 415 RGTDEPYRMMTSRVELRLLCRADNADERLVPLAVEAGL---RTRSDLEKIQRKYQRIQAE 471

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERL 536
           L+   L    + +TS           A  +L  P+ +  +L + + P   + S+  I ++
Sbjct: 472 LER--LERLRIENTS-----------ALLWLRRPEATYSDLIARLGPSPFELSADEIIQV 518

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + YA Y  RQ   ++ +K  E   IP   DY  +P+LS E +EKLS  +P  + +AS
Sbjct: 519 EIRAKYAGYIQRQQKLSERLKELESYHIPMALDYDRIPSLSREAREKLSKTRPATVAEAS 578

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           ++ G+  + L  LL+Y+ K +
Sbjct: 579 RVPGVRDSDLTALLVYLTKAS 599


>gi|189464898|ref|ZP_03013683.1| hypothetical protein BACINT_01242 [Bacteroides intestinalis DSM
           17393]
 gi|189437172|gb|EDV06157.1| hypothetical protein BACINT_01242 [Bacteroides intestinalis DSM
           17393]
          Length = 624

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 384/625 (61%), Gaps = 28/625 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPAIGG+ KG +VRE+DAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAIGGIAKGQIVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +    +   R   ++LT GTFL G++HIG+ ++  GRM +  S  L  
Sbjct: 124 REILVENGEITGLTTFLDVTFRAKCIILTAGTFLNGLMHIGRTQLAGGRMAEPASYELTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  +   + GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C   
Sbjct: 184 SIARHGIEYGRMKTGTPVRIDGRSVHYEYMETQDGECDFHKFSFMDTSVRHLKQLPCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E HR++ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEVHRVLREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP  IQ + ++ +P  + + I RPGYAIEYDY +P +L  TLE+K+I  L
Sbjct: 304 ELYLNGFSSSLPMNIQIEALKKVPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKRIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    KLG + E R     +KR A     ++ + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKEDRYELLKRKREAISNIVEFTRNYSM 483

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             +L+  ++   + L +T +  +Q  K     + ++ P  +++N+       R+  + V 
Sbjct: 484 KPALINPVL---EQLGTTPL--RQGCKL---IDLINRPQVTLENMAEHVDAFRRELNKVT 535

Query: 534 ERLQ--IESS-----YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           ER +  IE++     Y  Y GR+ I A ++   E   I   F+Y+S+ +LS E ++KL  
Sbjct: 536 ERKEEIIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFNYNSIQSLSTEARQKLVK 595

Query: 587 LKPFNLLQASKIEGMTPAALNLLLI 611
           + P  + QAS+I G++P+ +N+LL+
Sbjct: 596 IDPETIAQASRIPGVSPSDINVLLV 620


>gi|34541585|ref|NP_906064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas gingivalis W83]
 gi|81170568|sp|Q7MTG9|MNMG_PORGI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|34397902|gb|AAQ66963.1| glucose-inhibited division protein A [Porphyromonas gingivalis W83]
          Length = 625

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 371/625 (59%), Gaps = 25/625 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AAKLG+   LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAAKLGSQVLLITPDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V DA  IQFR+LN  KGPA+  PR Q+DR  +  A +  +  + NL + Q  V
Sbjct: 64  LGGRMGIVTDATAIQFRMLNRSKGPAMWSPRAQSDRMRFMEAWRDIVEHEPNLYMWQDSV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +  +  ++ +V       +  TVVLTTGTFL GV+H G+  I  GR+ +   + +  
Sbjct: 124 RCLSIRQGAVAGVVTALGVEFQARTVVLTTGTFLGGVMHFGERMIEGGRIAEPAFHGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                 F T R+KTGTPAR+DG++I +  T +Q  +E    FS+M T +   RQ  C   
Sbjct: 184 QLRDLGFRTDRMKTGTPARIDGRSIDFSLTTEQSGEEDHHRFSYMDTPRRVLRQRSCYAL 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H I+ + +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  ++
Sbjct: 244 YTNPECHEILSKGLDRSPLYNGQIQSIGPRYCPSIETKIVTFADKEMHQLFLEPEGETSN 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP EIQ + ++ IP L  V+I RPGYAIEYD+ +P +L  TLETK + GL
Sbjct: 304 EFYLNGFSSSLPLEIQLEALKAIPALRHVHIYRPGYAIEYDFFDPTQLRHTLETKPVKGL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGL+AGIN+    +        R ++YIGV+IDDL SKGV EP
Sbjct: 364 FFAGQINGTTGYEEAAGQGLIAGINAHLHCHGAGEFTLGRDEAYIGVLIDDLVSKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL------ 477
           YRMFTSRAEYRI LR D+AD RLTP    +G    RR    ++ ++E    R        
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTPKAEAIGLADSRR----SELLREKQVFRDKLIDFTH 479

Query: 478 ---LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------ 528
              LK  ++     S+  +  KQ  K    Y+ L  P   +  + S+ P  ++       
Sbjct: 480 KFSLKPDLINPHLESAGHLPLKQGIKL---YDLLLRPQIGMNEVCSMVPSLQRIVEEIPA 536

Query: 529 --SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                ++E  +I   Y  Y  R+   A +I   E   +P+  DY  + +LS E ++KL+ 
Sbjct: 537 SRREEIVEAAEILIKYDGYIKRERALADKINRLESIRLPQHVDYMQMQSLSTEARQKLTS 596

Query: 587 LKPFNLLQASKIEGMTPAALNLLLI 611
           ++P  + QAS+I G++P  +++LL+
Sbjct: 597 IRPETIAQASRIPGVSPHDVSILLV 621


>gi|218131739|ref|ZP_03460543.1| hypothetical protein BACEGG_03360 [Bacteroides eggerthii DSM 20697]
 gi|317474644|ref|ZP_07933918.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides eggerthii 1_2_48FAA]
 gi|217986042|gb|EEC52381.1| hypothetical protein BACEGG_03360 [Bacteroides eggerthii DSM 20697]
 gi|316909325|gb|EFV31005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 624

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/624 (42%), Positives = 376/624 (60%), Gaps = 26/624 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQDTVQ 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +        R   +VLT GTFL G++H+G+  +P GRM +  S  L  S
Sbjct: 125 EILVENGEVTGLTTLWGVTFRAKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+DG+++ ++  + Q  +     FSFM + + + +Q+ C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDGRSVHYEDMDVQDGENDFHKFSFMDNGVRHLKQLPCWTCF 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ + ++ IP    + I RPGYAIEYD+ +P +L  TLETKKI  LF
Sbjct: 305 LYLNGFSSSLPMDIQIEALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKKIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-----RQKRFA-----KYIQEYNFL 474
           RMFTSRAEYRI LR D+AD RLT    KLG          R KR A      + + Y+  
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAWKLGLAKNDRYELLRSKREAVTNIINFTRNYSMK 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL-- 531
            +L+  ++   + L +T +  +Q  K     + ++ P  +++N+   +    R+   +  
Sbjct: 485 PALINPVL---EQLGTTPL--RQGCKL---IDLINRPQITLENMAQHVGAFHRELDKITE 536

Query: 532 ----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  +
Sbjct: 537 RKDEIIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLVKI 596

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 597 DPETIAQASRIPGVSPSDINVLLV 620


>gi|163786965|ref|ZP_02181413.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriales bacterium ALC-1]
 gi|159878825|gb|EDP72881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriales bacterium ALC-1]
          Length = 586

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 264/603 (43%), Positives = 359/603 (59%), Gaps = 44/603 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA +A +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNDVYDVIVVGAGHAGSEAAAASANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQEN 116
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR    E +RL ++       N
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLE----GTPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           LD  Q  V+G   E + +  +       ++  TVVLT GTFL G+IHIG      GR G+
Sbjct: 117 LDFYQEMVSGLIVENHKVVGVKTSLGIEVKAKTVVLTNGTFLNGLIHIGDKNFGGGRAGE 176

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITN 235
             +  +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FS++   K   
Sbjct: 177 RAATGITEQLVNLGFDSGRMKTGTPPRVDGRSLDYSKMIEQPGDENPEKFSYLDITKPLQ 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q  C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+
Sbjct: 237 EQRSCHMTYTSEQVHDLLREGFDRSPMFNGRIKSVGPRYCPSIEDKINRFADKDRHQLFV 296

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TL
Sbjct: 297 EPEGWNTCEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTL 356

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + +     R ++YIGV+IDDL
Sbjct: 357 ETKLVDGLYFAGQINGTTGYEEAASQGLMAGINASLKVQEREVFTLKRDEAYIGVLIDDL 416

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAEYR  LR DNAD RLTP G ++G   +RR  R  +   + +   
Sbjct: 417 ITKGTEEPYRMFTSRAEYRTLLRQDNADFRLTPKGYEIGLATKRRLSRMEEKQSKSDAFV 476

Query: 476 SLLKSL---------VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              K           VL +KN S      KQ  K    ++  + P+ + Q       D R
Sbjct: 477 QFFKDTSVKPEEANPVLEAKNSSPV----KQQDK---MFKLFARPNITTQ-------DVR 522

Query: 527 KFSSL------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           KF+++            VIE+ +I+  YA Y  ++   A ++   E   IP DFDY+ L 
Sbjct: 523 KFNAVERYIQDNNLDTEVIEQTEIQVKYAGYIEKEKNNADKLNRLENLKIPVDFDYNKLK 582

Query: 575 ALS 577
           ++S
Sbjct: 583 SMS 585


>gi|281422331|ref|ZP_06253330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella copri DSM 18205]
 gi|281403652|gb|EFB34332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella copri DSM 18205]
          Length = 623

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 366/625 (58%), Gaps = 19/625 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIGGGHAGCEAAA +A +GA T LIT   + IG MSCNPAIGG+ KG +VREIDA
Sbjct: 4   NYDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIGQMSCNPAIGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLD+ Q + 
Sbjct: 64  LGGQMGIVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIWQDQA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                       +     +     ++++T GTFL G++H+G+  +  GR  +   ++   
Sbjct: 124 DELLVADGEAIGVKTIWGAEFYAKSIIITAGTFLNGLMHVGRKMVEGGRCAEPAVHNFTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  ++   T R+KTGTP R+D +++ ++  E+Q  D     FS+M +    +Q+ C    
Sbjct: 184 SITRWGITTARMKTGTPVRIDKRSVHFEDMEEQPGDSDFHQFSYMGEHRVLKQLPCWTCY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H  +   +  S +Y+G I+S GPRYCPSIE K+V F +++ H +FLEPEG +T+ 
Sbjct: 244 TNKKVHETLKSGLADSPLYNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGEDTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P +IQ   +  IP L    I RPGYAIEYDY +P +L  +LE+K I GLF
Sbjct: 304 MYLNGFSSSMPMDIQLNALHEIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIIKGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGTVAGINAALHCVGDKTFEMNRDESYIGVLIDDLTTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    +LG     ++ R+  +I++   +  +++     
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTEKAYELGIA---KRDRYDWWIEKKEAIGRIIE--FCA 478

Query: 485 SKNLSSTSISFKQDGKTRTAY-------EFLSYPDFSIQNLFSICPDARKFSSL------ 531
           +  +    I+ K +    T         + ++ P  ++ NL  I PD +    +      
Sbjct: 479 NYPIKKDEINPKLEALGTTPLRAGCKLIDLIARPHLNLTNLSEIIPDLKTALEIPANRKE 538

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            + E  +I+  Y  Y  R+ + A ++   E   I   F+YS L  +S E ++KL  + P 
Sbjct: 539 EIAEAAEIKMKYKGYIERERLIADKMHRLEDIKIKGRFNYSELHEISTEGRQKLERIDPE 598

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L QAS+I G++P+ +N++L+ + +
Sbjct: 599 TLAQASRIPGVSPSDINVMLVLLGR 623


>gi|229496352|ref|ZP_04390072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316930|gb|EEN82843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas endodontalis ATCC 35406]
          Length = 626

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/626 (42%), Positives = 378/626 (60%), Gaps = 19/626 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G+   LIT   + I  +SCNPA+GG+ KG +VR
Sbjct: 1   MNREEYDVIVVGAGHAGCEAAAAAAAMGSRVLLITLDMNKIAQLSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G  G ++DA+ IQFR+LN  KGPA+  PR Q DR  +    +  + +  NL + 
Sbjct: 61  EVDALGGWSGWISDASSIQFRMLNRSKGPAMWSPRAQIDRMRFMERWRETLDTIPNLHIW 120

Query: 121 QGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           Q  VA    + K +I    +       CS VVLT GTFL G++H G+  IP GR+ +  S
Sbjct: 121 QDGVAELLVKNKRVIGVKTLLLKEFYSCS-VVLTVGTFLGGMMHFGRTMIPGGRISEPAS 179

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMTDKI-TNRQ 237
             L          T R+KTGTPAR+DG+++ W  T +Q  DE     FS+ T+   T RQ
Sbjct: 180 YGLTEQLRDLGCRTDRMKTGTPARIDGRSVDWSLTTEQKGDEGDFHHFSYCTEGANTLRQ 239

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C I  T+ E H I+  ++  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEP
Sbjct: 240 LSCHILYTSPECHEILRASLADSPLYNGQIQSIGPRYCPSIETKIVTFADKEQHQLFLEP 299

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT+  Y NG S++LP E+Q + +RT+P L  V I RPGYAIEYD+ +P +L+PTL  
Sbjct: 300 EGENTNEYYINGFSSSLPLEVQLEALRTLPALRNVRIYRPGYAIEYDFFDPTQLYPTLAH 359

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GL++AGQINGTTGYEEAA QG++AGIN+  +++ L      R+++YIGV++DDL +
Sbjct: 360 KLLGGLYMAGQINGTTGYEEAAGQGILAGINAHNEAHGLGDFVLQRSEAYIGVLVDDLVT 419

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAE+R  LR DNAD+RLTP  MKLG   E R+ RF    Q    +++ 
Sbjct: 420 KGVDEPYRMFTSRAEFRTLLRQDNADDRLTPYAMKLGLASELRRNRFTYKEQMIEEVKAF 479

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEF-----LSYPDFSIQNLFSICPDARKF---- 528
           +    +    ++S     +Q G+    +       L  P  ++ +L  + P    F    
Sbjct: 480 MAQYSVRPDRVNSL---LEQQGEQPLKHAIRLRELLLRPRLTLDHLLDVLPPFHTFVEKI 536

Query: 529 ---SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 ++ER++I+  YA Y  R+  +A      E   +   FDY SL  LS E ++KL 
Sbjct: 537 ASQREEILERVEIDIKYAGYIEREKQQADRAMRLESITLGNRFDYLSLEQLSTEARQKLD 596

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLI 611
            ++P  + QA++I G++P  +++LL+
Sbjct: 597 RIRPETIGQAARIPGVSPHDISVLLV 622


>gi|329960638|ref|ZP_08298981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fluxus YIT 12057]
 gi|328532511|gb|EGF59305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fluxus YIT 12057]
          Length = 632

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/627 (43%), Positives = 373/627 (59%), Gaps = 32/627 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 13  YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 73  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLSIWQDTVR 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V           +VLT GTFL G++H+G+  +P GRM +  S  L  S
Sbjct: 133 EILVENGEVIGLVTLWGVTFYSKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQLTES 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                   GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q+ C    
Sbjct: 193 IAAHGITYGRMKTGTPVRIDGRSVHYEYMDIQDGENDFHKFSFMDTGVRHLKQLPCWTCF 252

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 253 TNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQE 312

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLETKKI  LF
Sbjct: 313 LYLNGFSSSLPLDIQIAALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLETKKIKNLF 372

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 373 FAGQINGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEPY 432

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-----QKRFA-----KYIQEYNFL 474
           RMFTSRAEYRI LR D+AD RLT    KLG + + R     QKR A      + + Y+  
Sbjct: 433 RMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKKERYELLTQKREAVNRIIDFARNYSMK 492

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS---- 530
            +L+  ++   + L +T +  +Q  K     + ++ P  +I+N   I    + F      
Sbjct: 493 PTLINPVL---EQLGTTPL--RQGCKL---IDLINRPQVTIEN---IAEHVKAFKQELDK 541

Query: 531 ------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                  +IE  +I   Y  Y GR+ I A ++   E   I   FDY S+ +LS E ++KL
Sbjct: 542 ISDRKEEIIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYESIQSLSTEARQKL 601

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLI 611
             + P  + QAS+I G++P+ +N+LL+
Sbjct: 602 VKIDPETIAQASRIPGVSPSDINVLLV 628


>gi|307108896|gb|EFN57135.1| hypothetical protein CHLNCDRAFT_30521 [Chlorella variabilis]
          Length = 791

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/627 (39%), Positives = 366/627 (58%), Gaps = 20/627 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+GGGHAGCEAA  +A+LG  T L+T     I    CNPA+GG  K  LV E+DA
Sbjct: 115 AYDVVVVGGGHAGCEAALASARLGCKTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 174

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q RVLN  KGPAV   R Q D+  Y   M+R +    NL + +G V
Sbjct: 175 LGGEIGKMADRCYLQKRVLNHSKGPAVWALRAQTDKIEYAAGMRRVLEHSPNLFIREGMV 234

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            G   + N  +  +         C   VLTTGTF+ G I +G+  + AGR G++ S  L 
Sbjct: 235 TGVEVDGNDQVCGVSTFFGITFPCKAAVLTTGTFMNGQIWVGRQSMSAGRAGEAASTGLT 294

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIEC 240
              M+  F+T RLKTGTPAR+D +T+ +   E+Q  DE +  FSF  D   +R   Q+ C
Sbjct: 295 ERLMELGFETDRLKTGTPARVDKRTVNFAGLEEQPGDEEVRWFSF--DPAVHRPRPQLPC 352

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETHRI+ +N+  + +Y G + + GPRYCPSIEDKIVRF ++  HQ+FLEPE  
Sbjct: 353 HLTHTTAETHRILRDNLHETPVYGGWLDAKGPRYCPSIEDKIVRFADKESHQVFLEPESR 412

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y  G ST LPE +Q   + ++PGLE+  ++RP YA+EYDY+   +   +LETK++
Sbjct: 413 STPELYVQGFSTGLPERLQLALLHSLPGLERCKMLRPAYAVEYDYLPAHQCHASLETKRV 472

Query: 361 SGLFLAGQINGTTGYE------EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            GLF +GQ+NGTTG        EAAAQGLVAG+N+AR++ +L  +   R  SYIG ++DD
Sbjct: 473 GGLFFSGQLNGTTGKHAFRSGAEAAAQGLVAGLNAARRAQELPPVVLPRESSYIGTLLDD 532

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +K + EPYRM TSR+EYR+ LR DNAD RLTP+G +LG + +RR   F       +  
Sbjct: 533 LVTKDLREPYRMLTSRSEYRLVLRSDNADRRLTPLGRQLGLVDDRRWGLFQAKQARIDGE 592

Query: 475 RSLLKS--------LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
           R  L++        L   ++  SS ++              + YP      + +      
Sbjct: 593 RRRLEAARVPAGHPLTAAAEAASSQTVPPLVTLADLLRRPHVHYPLLEAHGMGAPPLAPA 652

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             ++   E ++++  Y  +  RQ  +   +  +  + IP   DY ++  LS E +EKLS 
Sbjct: 653 ALTAAEKESVEVDIKYEGFIRRQAKQLASVAAKHAKRIPDTLDYHAIHTLSMEAREKLSK 712

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++P ++ QAS+I G+ P+ ++ LL+++
Sbjct: 713 IRPRDIGQASRIGGVNPSDISNLLVHL 739


>gi|255010265|ref|ZP_05282391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
 gi|313148060|ref|ZP_07810253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
 gi|313136827|gb|EFR54187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
          Length = 625

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/630 (43%), Positives = 376/630 (59%), Gaps = 37/630 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  + +   REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKF-IWTWREILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       +VLT GTFL G++H+GK K+P GRM +  S  L  
Sbjct: 124 KEIIVENGEVVGLKTFWDVTFHAKCIVLTAGTFLNGLMHVGKTKLPGGRMAEPASYELTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C   
Sbjct: 184 SIAKHGVEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQCWTC 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H I+   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEEVHDILRNGLSDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP +IQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI  L
Sbjct: 304 ELYLNGFSSSLPMDIQIKALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKIRNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS---LLKS 480
           YRMFTSRAEYRI LR D+AD RLT    KLG + E R          Y  L+S    ++S
Sbjct: 424 YRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDR----------YALLKSKREAIES 473

Query: 481 LVLTSKNLSSTSI----SFKQDGKTRTAY-----EFLSYPDFSIQNLFSICP-------- 523
           +V  ++N S  +     + ++ G T   +     + ++ P  +I+N+    P        
Sbjct: 474 IVNFARNYSIKAALINDALEKLGTTPLRHGCKLIDLINRPQITIENISEHIPAFKRELEK 533

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             D RK    ++E  +I   Y  Y GR+ I A ++   E   I   FDY +L +LS E +
Sbjct: 534 ITDERK--DEILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDNLQSLSTEAR 591

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           +KL  + P  + QAS+I G++P+ +N+LL+
Sbjct: 592 QKLKKIDPETIAQASRIPGVSPSDINVLLV 621


>gi|260221689|emb|CBA30505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 628

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/617 (41%), Positives = 354/617 (57%), Gaps = 56/617 (9%)

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q N
Sbjct: 5   HLVKEVDAMGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRMLENQPN 64

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L + Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD
Sbjct: 65  LSLFQQAVDDLMVEGDRVVGAVTQVGIRFRGKTVVLTAGTFLDGKIHVGLNNYAAGRAGD 124

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD------ERLIPF-SFM 229
            P+ SL     +     GRLKTGTP R+DG++I + K  +Q  D        ++P  SFM
Sbjct: 125 PPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKCIEQPGDGVPGGMSDVMPVVSFM 184

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            +  +  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++
Sbjct: 185 GNVAMHPQQVPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADK 244

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 245 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQYELVRSMAGLENAHILRPGYAIEYDYFDP 304

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL------------ 396
           + L  + ET++I GLF AGQINGTTGYEEAAAQG+ AGIN+A +   +            
Sbjct: 305 RSLKGSFETRQIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQVRAMGGGDVALSAAGS 364

Query: 397 -----DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
                D     R  +Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G 
Sbjct: 365 ASYSDDTWLPGRDQAYLGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADARLTEVGR 424

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFL 508
           +LG +   R   F +     +     L+S  +  +NL+   S  +  K         + L
Sbjct: 425 ELGLVDNARWDAFCRKRDAVSRETERLRSTWVNPRNLAADESERVLGKSIEHEYNLADLL 484

Query: 509 SYPDFSIQNLFSICPDARKFSS--------------------------LVIERLQIESSY 542
             P+ S   L S+  D  K+++                           V+E+++I + Y
Sbjct: 485 RRPNVSYGGLMSL--DHGKYANRDLLDVVSRETAGLPTVDAAEVAFVAAVVEQVEIAAKY 542

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ  E +     E   +P D DY  + ALS E +++LS  +P  L QAS++ G+T
Sbjct: 543 SGYINRQKDEVERAAHYENLRLPDDLDYMQVTALSIEARQRLSKYRPETLGQASRLSGIT 602

Query: 603 PAALNLLLIYIKKNTVK 619
           PA ++LL+I++KK   +
Sbjct: 603 PATISLLMIHLKKGNFR 619


>gi|329956355|ref|ZP_08296952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides clarus YIT 12056]
 gi|328524252|gb|EGF51322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/624 (42%), Positives = 375/624 (60%), Gaps = 26/624 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  + 
Sbjct: 65  GGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQDTIC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +        R   VVLT GTFL G++H+G   +P GRM +  S  L  S
Sbjct: 125 EILVENGEVVGLTTLWGVTFRSKCVVLTAGTFLNGLMHVGHTMLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+DG+++ ++  + Q  +     FSFM + + + +Q+ C    
Sbjct: 185 IARHGITYGRMKTGTPVRIDGRSVHYEDMDIQDGENDFHKFSFMNNGVRHLKQLPCWTCF 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP  IQ + ++ IP    + I RPGYAIEYD+ +P +L  TLETKKI  LF
Sbjct: 305 LYLNGFSSSLPMNIQIEALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKKIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-----RQKRFA-----KYIQEYNFL 474
           RMFTSRAEYRI LR D+AD RLT    KLG   +      R KR A     ++ + Y+  
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAWKLGLAQKDRYELLRSKREAVTNIIEFTRNYSMK 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSL-- 531
            +L+  ++   + L +T +  +Q  K     + ++ P  +++N+   +    R+   +  
Sbjct: 485 PTLINPVL---EQLGTTPL--RQGCK---LIDLINRPQVTLENMAEHVSAFRRELDKITD 536

Query: 532 ----VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  +
Sbjct: 537 RKDEIIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLVKI 596

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 597 DPETIAQASRIPGVSPSDINVLLV 620


>gi|150003782|ref|YP_001298526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus ATCC 8482]
 gi|294777394|ref|ZP_06742845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus PC510]
 gi|166222908|sp|A6KZP0|MNMG_BACV8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149932206|gb|ABR38904.1| glucose-inhibited division protein A [Bacteroides vulgatus ATCC
           8482]
 gi|294448462|gb|EFG17011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus PC510]
          Length = 623

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 261/622 (41%), Positives = 366/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 125 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C    T
Sbjct: 185 ITRHGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 245 NEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 305 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+  + +
Sbjct: 425 MFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTFSIKA 484

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             ++    S    G  R  +     + L+ P  +I+N+    P  +            VI
Sbjct: 485 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P  L 
Sbjct: 542 EAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGISPSDINVLLVLLGR 623


>gi|188995801|ref|YP_001930053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595481|dbj|BAG34456.1| glucose-inhibited division protein A [Porphyromonas gingivalis ATCC
           33277]
          Length = 625

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 268/622 (43%), Positives = 372/622 (59%), Gaps = 19/622 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AAKLG+   LIT   + I  MSCNPA+GG+ KG +VREID+
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAAKLGSQVLLITPDMNKIAQMSCNPAVGGIAKGQIVREIDS 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V DA  IQFR+LN  KGPA+  PR Q+DR  +  A +  +  + NL + Q  V
Sbjct: 64  LGGRMGIVTDATAIQFRMLNRSKGPAMWSPRAQSDRMRFMEAWRDIVEHEPNLYMWQDSV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +  +  ++ +V       +  TVVLTTGTFL GV+H G+  I  GR+ +   + +  
Sbjct: 124 RCLSIRQGAVAGVVTALGVEFQARTVVLTTGTFLGGVMHFGERMIEGGRIAEPAFHGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
                 F T R+KTGTPAR+DG++I +  T +Q  +E    FS+M T +   RQ  C   
Sbjct: 184 QLRDLGFRTDRMKTGTPARIDGRSIDFSLTTEQSGEEDHHRFSYMDTPRRVLRQRSCYAL 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H I+ + +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  ++
Sbjct: 244 YTNPECHEILSKGLDRSPLYNGQIQSIGPRYCPSIETKIVTFADKEMHQLFLEPEGETSN 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP EIQ + ++ IP L  V+I RPGYAIEYD+ +P +L  TLETK + GL
Sbjct: 304 EFYLNGFSSSLPLEIQLEALKAIPALRHVHIYRPGYAIEYDFFDPTQLRHTLETKPVKGL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGL+AGIN+  + +        R ++YIGV+IDDL SKGV EP
Sbjct: 364 FFAGQINGTTGYEEAAGQGLIAGINAHLQCHGAGEFTLGRDEAYIGVLIDDLVSKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR------QKRFAKYIQEYNFLRSL 477
           YRMFTSRAEYRI LR D+AD RLTP    +G    RR      ++ F   + ++    SL
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTPKAEAIGLADSRRCELLREKQVFRDKLIDFTHKFSL 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------S 529
              L+      S+  +  KQ  K    Y+ L  P   +  + ++ P  ++          
Sbjct: 484 KPDLI-NPHLESAGHLPLKQGIKL---YDLLLRPQIGMNEVCTMVPSLQRIVEEIPASRR 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             ++E  +I   Y  Y  R+   A +I   E   +P+  DY  + +LS E ++KL+ ++P
Sbjct: 540 EEIVEAAEILIKYDGYIKRERALADKINRLESIRLPQHVDYMQMQSLSTEARQKLTSIRP 599

Query: 590 FNLLQASKIEGMTPAALNLLLI 611
             + QAS+I G++P  +++LL+
Sbjct: 600 ETIAQASRIPGVSPHDVSILLV 621


>gi|224536936|ref|ZP_03677475.1| hypothetical protein BACCELL_01812 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521423|gb|EEF90528.1| hypothetical protein BACCELL_01812 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 624

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/618 (42%), Positives = 370/618 (59%), Gaps = 14/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE+DAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQDTVR 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +    +   R   +VLT GTFL G++H+G+ K+  GRM +  S  L  S
Sbjct: 125 EILVENGEVVGLTTLLDVTFRAKCIVLTAGTFLNGLMHVGRTKLAGGRMAEPASYELTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +   + GR+KTGTP R+DG+++ ++  E Q  +     FSF+   + + +Q+ C    
Sbjct: 185 IARHGIEYGRMKTGTPVRIDGRSVHYEYMETQDGECDFHKFSFLDTSVRHLKQLPCWTCF 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HR++ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRVLREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP  IQ + ++ +P  + + I RPGYAIEYDY +P +L  TLETKKI  LF
Sbjct: 305 LYLNGFSSSLPMNIQIEALKKVPAFKDLVIYRPGYAIEYDYFDPTQLKHTLETKKIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN----FLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT    KLG +   R +   +     N    F R+    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKSDRYELLKRKRDSINSIIEFTRNYSMK 484

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ--I 538
             L +  L     +  + G      + ++ P  +++N+       R+    V ER +  I
Sbjct: 485 PALINPVLEQLGTTPLRQGC--KLIDLINRPQVTLENMAEHVSAFRRELDKVTERKEEII 542

Query: 539 ESS-----YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++     Y  Y GR+ + A ++   E   I   FDY+++ +LS E ++KL  + P  + 
Sbjct: 543 EAAEILIKYEGYIGRERMIADKLARLESIKIKGKFDYNAIQSLSTEARQKLVKIDPETIA 602

Query: 594 QASKIEGMTPAALNLLLI 611
           QAS+I G++P+ +N+LL+
Sbjct: 603 QASRIPGVSPSDINVLLV 620


>gi|160331657|ref|XP_001712535.1| gidA [Hemiselmis andersenii]
 gi|159765984|gb|ABW98210.1| gidA [Hemiselmis andersenii]
          Length = 653

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/615 (42%), Positives = 368/615 (59%), Gaps = 6/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG E+A  +AK GA T LIT     IG   CNP+IGG  K  LV EIDAL
Sbjct: 40  YDVVVIGGGHAGIESALASAKRGAFTLLITLNLDKIGWQPCNPSIGGPAKSTLVHEIDAL 99

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG++AD   +  R+LN  KGPAV   R Q D++ Y    ++ + +  NL + +G V+
Sbjct: 100 GGGMGKIADRTFLHKRILNKSKGPAVWALRVQTDKKEYSEENKKMLDNYPNLTIQEGMVS 159

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                K+  +  I      +IRC T ++TTGTFL G I IG  KI AGR G+  S  L  
Sbjct: 160 DILISKSFKLKGIKTYFGGIIRCKTAIVTTGTFLGGTIWIGSKKISAGRAGEMASIGLTQ 219

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           +    +F T RLKTGTP R+D + I  +K EKQ +DE    FSF   +  +R+ ++C +T
Sbjct: 220 TLRNLEFKTSRLKTGTPPRIDSRHINLEKIEKQKSDETENWFSFDRMEWNSRKTMDCFLT 279

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   T  +I +N+  S  Y G +KS GPRYCPSIEDKIVRF ++  HQIFLEPEG   +
Sbjct: 280 HTTSRTFALIRKNLHLSPKYGGFMKSTGPRYCPSIEDKIVRFFDKKEHQIFLEPEGRILN 339

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  GIST LPE +Q + I+TIPGLE   ++RP Y+++YDYI   +L   L +K + GL
Sbjct: 340 EIYVQGISTGLPENLQIEIIKTIPGLENSKMVRPAYSVDYDYIFASQLDKNLMSK-VEGL 398

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI GTTGYEEA AQG++AG+N++    K + IC SR  S+IG +IDDL +K + EP
Sbjct: 399 FFAGQICGTTGYEEAGAQGILAGLNASLFCEKKNMICLSREGSFIGNLIDDLCTKQLKEP 458

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY-NFLRSLLKSLV 482
           YR+ TSR+E+R+ LR DNAD RLTP+G K G + +R+ K+F   IQ   N  R L K+ +
Sbjct: 459 YRVLTSRSEFRLLLRSDNADFRLTPLGRKYGLVNDRKWKKFKNKIQRIENESRRLNKTFI 518

Query: 483 -LTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            + SK L           K  ++  + +  P+F    L ++       +   I+RL+IE 
Sbjct: 519 KVNSKILKILESEIGNIVKKESSLAKLIGRPNFDFFQLNNLDLQNTSLNYEEIQRLEIEI 578

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ ++ K +       I K+ ++  +  LS E +EKL+  +P +L +A KI G
Sbjct: 579 KYLNYIERQELQIKNVDRIMNTQIKKNINFMKITQLSKEGREKLTKRRPVDLREALKIGG 638

Query: 601 MTPAALNLLLIYIKK 615
           ++ + +  L ++ ++
Sbjct: 639 ISASDIQTLFLFTRQ 653


>gi|302787481|ref|XP_002975510.1| hypothetical protein SELMODRAFT_415636 [Selaginella moellendorffii]
 gi|300156511|gb|EFJ23139.1| hypothetical protein SELMODRAFT_415636 [Selaginella moellendorffii]
          Length = 1151

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/610 (42%), Positives = 358/610 (58%), Gaps = 27/610 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAGCEAA  AA++GA T ++T     I    CNPA+GG  K  LV E+DA
Sbjct: 49  SFDVIVVGGGHAGCEAALAAARMGARTLMLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 108

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++ D   +Q RVLN  KGPAV   R Q D+  Y   M++ + + ENL       
Sbjct: 109 LGGEIGKITDKCYLQKRVLNRSKGPAVWALRAQTDKREYAREMKKVVETTENL------- 161

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRM 174
             F  E  +   +V +++++    T          VVLTTGTF+ G I +G+  + AGR 
Sbjct: 162 --FIRESMVTEVLVGRNDNVEGVGTFFGVSFFAPAVVLTTGTFMNGKIWVGRKSMSAGRA 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+S S  L  +   F F+T RLKTGTPAR+D +T+   + E Q  D+ +  FSF      
Sbjct: 220 GESASQGLTENLQSFGFETDRLKTGTPARVDVRTVDTSRLESQPGDDEVRWFSFDPAAHV 279

Query: 235 NR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            R Q  C ITRT  ETHR+I EN+  +  Y G ++S GPRYCPSIEDKIVRF +++ HQI
Sbjct: 280 ERAQQCCYITRTTPETHRLINENLLETPTYGGWVESKGPRYCPSIEDKIVRFKDKDSHQI 339

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYDY+   + +P
Sbjct: 340 FLEPEGRSVPELYVQGFSTGLPERLQLALLQTLPGLEHCAMLRPAYAVEYDYLPANQCYP 399

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL TKK+ GL+ +GQINGTTGYEEAAAQG VAG+N+AR   K D     R  SYIG +ID
Sbjct: 400 TLMTKKLEGLYFSGQINGTTGYEEAAAQGFVAGVNAARYCCKKDSFVLERESSYIGTLID 459

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +K + EPYR+   R+E+R+ LR DNAD+RLTP+G  LG I +RR   + +     + 
Sbjct: 460 DLVTKNLREPYRI---RSEHRLLLRADNADSRLTPVGRDLGLIDDRRWSLYQEKQSRISD 516

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
            +  L++    S+ +++  +       DG        L  P    + L          S 
Sbjct: 517 DKKRLQTTRYCSEKMNAEVLQLSGQPVDGPVLLNM-LLKRPHVHYELLDKHGAGNPLLSR 575

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E ++I+  Y     RQ I+ K++  +  + IP   DY+S+  LS E +EKL+ ++P 
Sbjct: 576 EEKECVEIDIKYEGLIARQTIQLKQMALKLHKEIPDSVDYTSVATLSKEAREKLTQIRPR 635

Query: 591 NLLQASKIEG 600
           N+ QAS+I G
Sbjct: 636 NIGQASRIGG 645


>gi|302823766|ref|XP_002993532.1| hypothetical protein SELMODRAFT_449154 [Selaginella moellendorffii]
 gi|300138663|gb|EFJ05424.1| hypothetical protein SELMODRAFT_449154 [Selaginella moellendorffii]
          Length = 1256

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/609 (42%), Positives = 357/609 (58%), Gaps = 27/609 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAA  AA++GA T ++T     I    CNPA+GG  K  LV E+DAL
Sbjct: 50  FDVIVVGGGHAGCEAALAAARMGARTLMLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDAL 109

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +G++ D   +Q RVLN  KGPAV   R Q D+  Y   M++ + + ENL        
Sbjct: 110 GGEIGKITDKCYLQKRVLNRSKGPAVWALRAQTDKREYAREMKKVVETTENL-------- 161

Query: 126 GFNTEKNIISSIVMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRMG 175
            F  E  +   +V +++++    T          VVLTTGTF+ G I +G+  + AGR G
Sbjct: 162 -FIRESMVTEVLVGRNDNVEGVGTFFGVNFFAPAVVLTTGTFMNGKIWVGRKSMSAGRAG 220

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +S S  L  +   F F+T RLKTGTPAR+D +T+   + E Q  DE +  FSF       
Sbjct: 221 ESASQGLTENLQSFGFETDRLKTGTPARVDVRTVDTSRLESQPGDEEVRWFSFDPAAHVE 280

Query: 236 RQIECG-ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           R  +C  ITRT  ETHR+I EN+  +  Y G ++S GPRYCPSIEDKIVRF +++ HQIF
Sbjct: 281 RDQQCCYITRTTPETHRLINENLLETPTYGGWVESKGPRYCPSIEDKIVRFKDKDSHQIF 340

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYDY+   + +PT
Sbjct: 341 LEPEGRSVPELYVQGFSTGLPERLQLALLQTLPGLEHCAMLRPAYAVEYDYLPANQCYPT 400

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L TKK+ GL+ +GQINGTTGYEEAAAQG VAG+N+AR   K D     R  SYIG +IDD
Sbjct: 401 LMTKKLEGLYFSGQINGTTGYEEAAAQGFVAGVNAARYCCKKDSFVLERESSYIGTLIDD 460

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +K + EPYR+   R+E+R+ LR DNAD+RLTP+G  LG I +RR   + +     +  
Sbjct: 461 LVTKNLREPYRI---RSEHRLLLRADNADSRLTPVGRDLGLIDDRRWSLYQEKQSRISDD 517

Query: 475 RSLLKSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  L++    S+ +++  +       DG        L  P    + L          S  
Sbjct: 518 KKRLQTTRYCSEKMNAEVLQLSGQPVDGPVLLNM-LLKRPHVHYELLDKHGAGNPLLSRE 576

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E ++I+  Y     RQ ++ K++  +  + IP   DY+S+  LS E +EKL+ ++P N
Sbjct: 577 EKECVEIDIKYEGLIARQTMQLKQMALKLHKEIPDSVDYTSVATLSKEAREKLTQIRPRN 636

Query: 592 LLQASKIEG 600
           + QAS+I G
Sbjct: 637 IGQASRIGG 645


>gi|291457895|ref|ZP_06597285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419439|gb|EFE93158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 642

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/631 (40%), Positives = 373/631 (59%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   SYDV V+G GHAG EAA   A+LG  T +       I  M CNP IGG  KGHLVR
Sbjct: 14  MTELSYDVAVVGAGHAGVEAALACARLGLKTIMFCLSADHIAMMPCNPNIGGSSKGHLVR 73

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   +Q R+LN  KGPAV   R QAD++ Y   M+R + +QENL + 
Sbjct: 74  ELDALGGEMGKNIDKTFLQSRMLNRSKGPAVHSLRAQADKQEYMKEMRRTVENQENLTIR 133

Query: 121 QGEVAGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           Q E+          E+ I   +     +      VVL TG +L      G++    G  G
Sbjct: 134 QAEITELLLKESEGEREIFG-VRDAAGTDFFARAVVLCTGVYLNSRCIYGEVSEDTGPNG 192

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KI 233
              +  L     +      R KTGTPAR+DG+TI + K E Q  D  +IPFSF TD   +
Sbjct: 193 LRNAGHLSGFLRRAGVRMLRFKTGTPARIDGRTIDFSKMEIQKGDRPVIPFSFSTDPDTV 252

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              QI+C +T TN +TH II +NI+ S +Y+G+I+  GPRYCPSIEDK++RF E+  HQI
Sbjct: 253 QKEQIDCYLTYTNEKTHEIIRKNIERSPMYNGEIEGTGPRYCPSIEDKVMRFPEKERHQI 312

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           F+EPEGL T+ +Y +G+S++LPE++Q    R++ GLE+  I+R  YAIEYD I+ ++L  
Sbjct: 313 FIEPEGLYTNEMYLSGMSSSLPEDVQIDMYRSMEGLERAEIVRNAYAIEYDCIDSQQLKS 372

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LE + I GLF  GQ NG++GYEEAA QG +AG+N+A +      +   R+++YIGV+ID
Sbjct: 373 SLEFQTIRGLFSGGQFNGSSGYEEAAVQGFMAGVNAAMRCLGKKAVVLDRSEAYIGVLID 432

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-----ERRQKRFAKYI 468
           DL +K   EPYRM TSRAEYR+ LR DNAD RL  IG ++G I      + ++K+ A   
Sbjct: 433 DLVTKENREPYRMMTSRAEYRLLLRQDNADLRLREIGYRIGLISAEELRKTQEKKLAIER 492

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
           +     +S +     T++ L     +  + G +    E    P+ + ++L  + PD  + 
Sbjct: 493 ETERMEKSFVGGGEETNRILRKLGTAEIKSGVSLA--ELCRRPELNYESLRPLDPDRPEL 550

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S+ V E ++IE  Y  Y  RQ+ +    K  E++ IP+D DY+ +  L  E ++KL +++
Sbjct: 551 SAEVREEVEIEIRYKGYIARQLQQVSHFKSMEEKRIPEDIDYAEVGNLRLEARQKLKLIR 610

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P N+  AS+I G++PA +++LL+Y++K   K
Sbjct: 611 PDNVGMASRISGVSPADISVLLVYLEKRRRK 641


>gi|237724395|ref|ZP_04554876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. D4]
 gi|229437264|gb|EEO47341.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides dorei 5_1_36/D4]
          Length = 623

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/622 (41%), Positives = 367/622 (59%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 125 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C    T
Sbjct: 185 ITRHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 245 NEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 305 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+  + +
Sbjct: 425 MFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTFSIKA 484

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             ++    S    G  R  +     + L+ P  +I+N+    P  +            VI
Sbjct: 485 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L 
Sbjct: 542 EAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGISPSDINVLLVLLGR 623


>gi|157363553|ref|YP_001470320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga lettingae TMO]
 gi|205831565|sp|A8F522|MNMG_THELT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157314157|gb|ABV33256.1| glucose inhibited division protein A [Thermotoga lettingae TMO]
          Length = 605

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/611 (43%), Positives = 362/611 (59%), Gaps = 25/611 (4%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAA   A+LG  TAL+T     +    CNPAIGG  KG +VREIDAL G M +V D   I
Sbjct: 2   EAALATARLGFKTALLTSNLDRVAWAPCNPAIGGPAKGIIVREIDALGGEMAKVTDETMI 61

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
             R+LN  KG +VR  R Q D+  Y   M+R +   +NL +   +V     EK  + S+V
Sbjct: 62  NVRMLNTSKGASVRALRAQIDKVSYSQKMKRILEETQNLYLRHSQVCDILVEKGKVKSVV 121

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
                  +   ++LT GTFL G I IG     AGR+GD PS  L  S  K+     R KT
Sbjct: 122 DTLGIEYKSRAIILTAGTFLNGKIFIGHATFEAGRLGDFPSKGLTESLEKYGIRFQRFKT 181

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGITRTNLETHRIIMEN 256
           GTPAR+ GK+I + K  +Q   +  + FS+  DK  I ++   C +T TN +TH II +N
Sbjct: 182 GTPARILGKSIDFSKMIRQDTSKEPLCFSYF-DKPVILSKDYPCWLTYTNEKTHEIIRKN 240

Query: 257 IKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
           ++ S +Y GD+K     GPRYCPSIEDK+V+F  +N HQIF+EPEG  T   Y NG+ST+
Sbjct: 241 LRFSPLY-GDVKLIVGKGPRYCPSIEDKVVKFPSKNMHQIFVEPEGKTTGEYYLNGLSTS 299

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           LP E+Q + IRTIPGLE  +I RP YAIEYDY +P +L+ TLE+K + GLFLAGQINGT+
Sbjct: 300 LPYEVQLEMIRTIPGLENAHITRPAYAIEYDYADPTQLYHTLESKIVEGLFLAGQINGTS 359

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAA QGL+AGIN+A K    +     R+++YIGVMIDD+ +KGV EPYR+ TSRAE+
Sbjct: 360 GYEEAAGQGLIAGINAALKLRGENQFTLDRSEAYIGVMIDDIVTKGVDEPYRILTSRAEF 419

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           R+ LR DNA  RL+  G ++G I +        + +E   L S +K+ +   K +S    
Sbjct: 420 RLLLRHDNAHLRLSKKGYQIGLIPKW-------FYEEILTLESRIKTEIERLKQVSIKPT 472

Query: 490 ------STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
                  TSI+     +  T ++ L  PD + + L S+ P     S  VIE++++ + Y 
Sbjct: 473 GQINDFLTSINTHPLRQPTTLFQILKRPDITYEQLRSLDPSPMD-SPEVIEQIELTAKYE 531

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  + + E K     EK  IP+  DY  +P LS   +EKL  ++  N+LQ S++ G+TP
Sbjct: 532 DYIEKMLEETKVFNDLEKITIPEAIDYGKIPNLSVVAREKLEKIRLRNVLQVSRVPGITP 591

Query: 604 AALNLLLIYIK 614
           A +  L+ Y+K
Sbjct: 592 ADILALITYLK 602


>gi|156742847|ref|YP_001432976.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Roseiflexus castenholzii DSM 13941]
 gi|205375711|sp|A7NN26|MNMG_ROSCS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156234175|gb|ABU58958.1| glucose inhibited division protein A [Roseiflexus castenholzii DSM
           13941]
          Length = 676

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/656 (38%), Positives = 366/656 (55%), Gaps = 46/656 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAGCEAA  AA++G  T L+T     +  MSCNP+IGG  KGHLVREIDAL
Sbjct: 9   YDLIVVGAGHAGCEAAHAAARMGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ---- 121
            GLMGRV D   IQ R+LN  KGPAV+ PR QAD+ LY   M+  + +  NLD+ Q    
Sbjct: 69  GGLMGRVTDRTFIQIRLLNESKGPAVQAPRAQADKRLYAKVMKETLETTPNLDLRQAMIE 128

Query: 122 -----------GEVAGFNTEKNIIS---SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                      G  A  +    +     +++     + +   +VLTTGTFLRG    G+ 
Sbjct: 129 RILLPQPPGRNGSAAPADDPAGVQPGHYAVITHTRRVYQSRALVLTTGTFLRGRAITGEA 188

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT------------- 214
              AGR G++P+ +L        F   RLKTGTP R+D +TI + +T             
Sbjct: 189 IWGAGRAGEAPATALGEDLAALGFPLVRLKTGTPPRIDARTIDFSQTSVQQGSPTPLFFG 248

Query: 215 -----------EKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIY 263
                      E  F       +          Q+ C +  T  E H I+  N+  + ++
Sbjct: 249 HYYRVLGEIPPEPAFTGAPACAYPEPLRAAWRPQLPCYLVHTTPEFHEIVRRNLDRAPLF 308

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
           SG I+  GPRYCPSIEDKIVRF ++  H +FLEPEG +T  VY  G +T+LPE++Q   +
Sbjct: 309 SGIIEGVGPRYCPSIEDKIVRFADKERHGLFLEPEGWSTHEVYVQGCNTSLPEDVQWAML 368

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           R+IP L +V ++R GYAIEYD +   E+   + +++I GLF AGQINGTTGYEEAAAQGL
Sbjct: 369 RSIPALRRVELMRAGYAIEYDALATGEIAADMSSRRIPGLFFAGQINGTTGYEEAAAQGL 428

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AGIN+AR       I   R ++YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD
Sbjct: 429 MAGINAARFIQGKPPIILRRDEAYIGVLIDDLITKEIREPYRMFTSRAEHRLLLRTDNAD 488

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL---TSKNLSSTSISFKQDGK 500
            RLT +  +LG +   R +   +  +E   L  +L+   L    + N   + +       
Sbjct: 489 LRLTRLAGELGLVDRERVEAVERKREESERLLRVLRGQRLFPSAATNARLSDVGIAPLSS 548

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             +A + L  P+   + L     D     + + E+++IE+ Y  Y  +Q  E + ++  E
Sbjct: 549 EMSAEDVLRRPEVRYEQLRQAL-DLPACDADIAEQVEIEAKYGGYLQKQQREVERLRRME 607

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            R IP DFD+++L  L NE ++ L   +P  + QA+++ G+ PA + +L++ +++ 
Sbjct: 608 ARRIPPDFDFTALRGLRNEARQTLQRFRPATVGQAARLAGINPADVAILIVALERR 663


>gi|307298513|ref|ZP_07578316.1| glucose inhibited division protein A [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915678|gb|EFN46062.1| glucose inhibited division protein A [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 628

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 266/622 (42%), Positives = 367/622 (59%), Gaps = 21/622 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIG GHAG EAA   A++G  T ++     T+G   CNPA+GG  KG +VREID L
Sbjct: 10  FDIIVIGAGHAGIEAAIAGARMGMKTLILNINLDTVGWTPCNPAMGGPAKGIVVREIDVL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G + +  D A +  R+LN  KG AVR  R Q D+  Y   M+R +  QENL +  G V 
Sbjct: 70  GGEIAKSTDQASLNIRILNTSKGAAVRALRAQVDKIRYSQTMKRSMEMQENLFIQSGIVK 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TEK  +  ++          +V++ +GTFL G I IG  + PAGR+G+ PS  L  S
Sbjct: 130 AIETEKGSVKGVITNFGLRYSARSVIVASGTFLGGKIFIGPHEFPAGRLGEFPSTELTGS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
                F+  R KTGTPAR+ G++I + + E+Q   E  + FS  ++  +      C +TR
Sbjct: 190 LRSIGFEVRRFKTGTPARIAGRSIDFAEMERQGTSETPLCFSHFSEPYVLEDDHPCWLTR 249

Query: 245 TNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           TN ETH II  ++  S +Y GD+K   S GPRYCPSIEDK+++F  ++ HQ+F+EPE   
Sbjct: 250 TNKETHDIIKRDLHFSPLY-GDLKLIDSRGPRYCPSIEDKVIKFSSKDSHQLFVEPESAY 308

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++  Y NG+ST+LP E Q + IRTIPGL +  I+RP YAIEYDYINP +L+ TLE+K + 
Sbjct: 309 SNEYYLNGLSTSLPYETQLEMIRTIPGLGRAEIVRPAYAIEYDYINPTQLYSTLESKVVE 368

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ+NGT+GYEEAA QGL+AGIN++ K      +  SR+++YIGVMIDDL +KGV 
Sbjct: 369 NLYFAGQVNGTSGYEEAAGQGLIAGINASAKLLGEKQLVLSRSEAYIGVMIDDLVTKGVD 428

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LRSLLKS 480
           EPYR+ TSRAEYR+ LR DNA  RLT  G + G +    ++R     +E    L  L K 
Sbjct: 429 EPYRLLTSRAEYRLLLRHDNAHIRLTEYGYRYGLVPAWFKERVDSLTREIKTQLIRLQKI 488

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLS--------YPDFSIQNLFSICPDARKFSSLV 532
            V  S+ L+   IS K   K     +F S        Y D S+ +   I  D       V
Sbjct: 489 NVRPSEGLNELLIS-KGSSKIDLPVKFSSLLKRAGVGYRDISMFDPEPILDDD------V 541

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           I +++IE  Y+ Y  R   E K ++  E+ LIP   DY ++  LS E KEKL   KP ++
Sbjct: 542 IGQVEIEVKYSGYIDRLKAEVKRLEEIEEDLIPSTMDYDAVSNLSTEAKEKLKKTKPASV 601

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QA +I G+TP+ +  L  ++K
Sbjct: 602 GQAMRIPGLTPSDIMNLSFHLK 623


>gi|206895192|ref|YP_002247577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737809|gb|ACI16887.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 614

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 265/614 (43%), Positives = 352/614 (57%), Gaps = 11/614 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA +AAKLGA T LIT    T+  + CNPAIGG GK  LVREIDA
Sbjct: 2   SYDVIVVGAGHAGCEAAHIAAKLGAKTLLITSFIDTVALLPCNPAIGGPGKSQLVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGRV + + IQ RVLN  KGPAV   R Q D+ LY   M   +   +NL+++Q  V
Sbjct: 62  LGGLMGRVTNRSYIQARVLNKSKGPAVWANRAQVDKYLYPSEMLNRLSQTKNLELMQAHV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   ++N +  +  +D   I   TV+LTTGTFL G I+I     PAGR G+ P+  +  
Sbjct: 122 NGLLYDQNTVYGVKTEDGRHIEGKTVILTTGTFLEGRIYISSWSKPAGRWGEFPATGISE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K  F  GR  TGT  R+D KTI + K   Q  D  L  FSF  +          + R
Sbjct: 182 DLKKLGFSMGRFNTGTTPRIDEKTIDYSKATIQENDPGL-SFSFWEEPNPPGYKPVYMVR 240

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  T  ++ ENI  +A  +  +   GPRYCPSIE+K V F E+  H IFLEP GL T  
Sbjct: 241 TNARTMALVRENINLTASRASTMVRVGPRYCPSIEEKAVWFPEKTEHLIFLEPVGLGTSE 300

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG++ +LP +IQ + +RTI GLE+V IIRPGY ++YD + P +L  TLE K +  LF
Sbjct: 301 IYPNGLAISLPVDIQQKVLRTIEGLEEVEIIRPGYTVDYDMVWPMQLNITLEAKHVKNLF 360

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQG++AGIN+A K+         R + +IG +ID+LT+K + EPY
Sbjct: 361 LAGQINGTTGYEEAAAQGIIAGINAALKALGEPPFTILRHEGFIGTLIDELTTKELAEPY 420

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+E+R+  R DNA  RL       G +    Q  ++K  +    +  +   L  T
Sbjct: 421 RMLTSRSEFRMIHRQDNAIWRLAEKAHSRGIL---TQAEYSKVQERKTKMDEVFNKLKET 477

Query: 485 SKNLSSTSISF-KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           S  +S T   F KQ  K  T    L  P+  + ++    P+    S      ++IE  Y 
Sbjct: 478 S--VSPTYFPFLKQPVKAETV---LRRPEVHLGDMEQFIPEIAVLSDEEKLTVEIEVKYE 532

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  ++M     IK  E   IP+DF Y  LP +S E  + L   KP  L QAS++ G+  
Sbjct: 533 GYLQKEMSLLNSIKKLENLNIPQDFQYDGLP-ISREALDVLKKTKPSTLGQASRLAGVHM 591

Query: 604 AALNLLLIYIKKNT 617
           + L ++L  ++K +
Sbjct: 592 SDLAVILSALRKGS 605


>gi|212692562|ref|ZP_03300690.1| hypothetical protein BACDOR_02059 [Bacteroides dorei DSM 17855]
 gi|265752647|ref|ZP_06088216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_33FAA]
 gi|212664847|gb|EEB25419.1| hypothetical protein BACDOR_02059 [Bacteroides dorei DSM 17855]
 gi|263235833|gb|EEZ21328.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_33FAA]
          Length = 623

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 259/622 (41%), Positives = 366/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 125 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C    T
Sbjct: 185 ITHHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 245 NEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 305 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+  + +
Sbjct: 425 MFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTFSIKA 484

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             ++    S    G  R  +     + L+ P  +I+N+    P  +            VI
Sbjct: 485 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L 
Sbjct: 542 EAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGISPSDINVLLVLLGR 623


>gi|332866945|ref|ZP_08437271.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013113]
 gi|332734326|gb|EGJ65453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013113]
          Length = 557

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/555 (43%), Positives = 339/555 (61%), Gaps = 8/555 (1%)

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L+ R +D   IQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q      
Sbjct: 2   LLNRSSDL--IQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDL 59

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L     
Sbjct: 60  IVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLR 119

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTN 246
           +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C IT TN
Sbjct: 120 ELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTN 179

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +Y
Sbjct: 180 EKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELY 239

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ A
Sbjct: 240 PNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFA 299

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  EPYRM
Sbjct: 300 GQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRM 359

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ +     
Sbjct: 360 FTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVWAAPN 419

Query: 487 NLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           N        ++     K  +A + L  P+ +   +  +     + S  V E+++I   Y 
Sbjct: 420 NPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIAVKYE 477

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TP
Sbjct: 478 GYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTP 537

Query: 604 AALNLLLIYIKKNTV 618
           AA+ L++I I+KN +
Sbjct: 538 AAVQLVMITIRKNNM 552


>gi|254880986|ref|ZP_05253696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_3_47FAA]
 gi|254833779|gb|EET14088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_3_47FAA]
          Length = 662

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/625 (41%), Positives = 368/625 (58%), Gaps = 21/625 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 44  YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 103

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 104 GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 163

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 164 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 223

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C    T
Sbjct: 224 ITRQGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 283

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 284 NEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 343

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 344 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 403

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 404 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 463

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    KLG + + R +      +  + +    K+  + +
Sbjct: 464 MFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVSRIIDFAKTFSIKA 523

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSL--------- 531
             ++    S    G  R  +     + L+ P  +I+N+    P    F +L         
Sbjct: 524 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIP---AFKALLDQITDRKE 577

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            VIE  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P 
Sbjct: 578 EVIEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPE 637

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L QAS+I G++P+ +N+LL+ + +
Sbjct: 638 TLAQASRIPGISPSDINVLLVLLGR 662


>gi|224023518|ref|ZP_03641884.1| hypothetical protein BACCOPRO_00220 [Bacteroides coprophilus DSM
           18228]
 gi|224016740|gb|EEF74752.1| hypothetical protein BACCOPRO_00220 [Bacteroides coprophilus DSM
           18228]
          Length = 623

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/630 (42%), Positives = 365/630 (57%), Gaps = 23/630 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N +YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFNYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVI 120
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + 
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAW-REILENIPNLHIW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   ++ +V           VVLT GTFL G++HIG+  +  GR  +  S 
Sbjct: 120 QDTVEELLVENGEVTGVVTCWGVTFHAKCVVLTAGTFLNGLMHIGRKMLAGGRCAEPASY 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  +     GR+KTGTP R+D +++ +D  E Q  +     FS++++    +Q++C
Sbjct: 180 HLTESITRHGITAGRMKTGTPVRIDARSVHFDLMETQDGENDFHRFSYISEPRKLKQLQC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H  +   +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 240 WTCYTNEEVHDTLRSGLADSPLYNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGE 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ + ++ IP    + + RPGYAIEYDY +P +L  TLE+K +
Sbjct: 300 TTRELYLNGFSSSLPMEIQLEALKKIPCFRDLVVYRPGYAIEYDYFDPTQLKHTLESKIV 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG++AGIN+       +     R ++YIGV+IDDL +KGV
Sbjct: 360 KNLFFAGQVNGTTGYEEAGGQGIIAGINAHINCQGGEPFVLGRDEAYIGVLIDDLVTKGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG + + R  +     +E   +    K+
Sbjct: 420 DEPYRMFTSRAEYRILLRQDDADMRLTERAYRLGLVKQDRYDKLCSKREEIERIVEFAKT 479

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSL---- 531
             + +  ++    S    G  R  +     + +S P  +I N   I P    F +L    
Sbjct: 480 YSIKADKINDALESL---GTARLTHGCKLIDIISRPQITIDN---IAPHVPAFQALLDRI 533

Query: 532 ------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 +IE  +I   Y  Y  R+   A +I   E   I   FDY+SL +LS E ++KL 
Sbjct: 534 EDRKEEIIEAAEIRIKYKGYIDRERTIADKIHRLESIRIKGKFDYASLQSLSTEARQKLV 593

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            + P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 594 KIDPETLAQASRIPGVSPSDVNVLLVLLGR 623


>gi|312878756|ref|ZP_07738556.1| glucose inhibited division protein A [Aminomonas paucivorans DSM
           12260]
 gi|310782047|gb|EFQ22445.1| glucose inhibited division protein A [Aminomonas paucivorans DSM
           12260]
          Length = 627

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/612 (40%), Positives = 351/612 (57%), Gaps = 4/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGH GCEAA  +A++GA T L+         M+CNP++GG  KGHL+RE+DAL
Sbjct: 8   YDVVVVGGGHGGCEAALASARMGARTLLLNLHLENAALMACNPSMGGPAKGHLIREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G   RV D   +Q R LN  KGPAVR  R Q D   Y LA +  + + +NL+V QGEV 
Sbjct: 68  GGFQARVTDRTTLQLRWLNTSKGPAVRTLRAQCDLVQYHLAFRMLLETTQNLEVHQGEVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  I  +       I    VVL  GT+L GV HIG  +  +G +G+ P++ L +S
Sbjct: 128 DLWVEQGRIRGVRTALGDPIEARRVVLAAGTYLAGVAHIGLHRFASGPLGELPASRLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F   RLKTGT  RL   T+ W     Q +D     FS  + K T +   C   RT
Sbjct: 188 LRREGFRVERLKTGTTPRLHADTVDWASLPLQESDPEPGAFSHFSPKRTYQGYPCAQIRT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH +I  ++  S +++G I+  GPRYCPSIEDK+VRF ER+ H +FLEP       +
Sbjct: 248 NRRTHDLIRAHLDRSPLFTGVIQGVGPRYCPSIEDKVVRFPERDSHPVFLEPLSATNREI 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y   +ST+LP ++Q   +RT+PG E+  +++PGYAIEYDY+ P +L P LETK + GLF 
Sbjct: 308 YVQNLSTSLPYDVQVALVRTLPGCERAKVLKPGYAIEYDYLPPTQLEPWLETKGVKGLFC 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NGT+GYEEAA+QGL+AGIN+ R     D +   R ++Y+GV++DDL +KG  EPYR
Sbjct: 368 AGQTNGTSGYEEAASQGLLAGINAVRTLRGEDPVVLGRHEAYLGVLVDDLVTKGTQEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL-VLT 484
           M TSR E+R+ LR DNAD RL P+G +LG + +R      +  +  + L   L++L V  
Sbjct: 428 MLTSRCEHRLLLRHDNADRRLAPLGRRLGLLEDRDWALLTERWRRQDDLEERLQALRVAP 487

Query: 485 SKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +  + S   S+         TA E L  P  +   L  +C           E + +E+ Y
Sbjct: 488 TDRVRSLLASWDTPAPEEPLTAKELLRRPQITWDRLAELC-GLEGEDREAGEYVAVETKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  +   ++  ++  +P+ FD+ S+P L  E   KL  ++P  L QA +I G+T
Sbjct: 547 QGYVERQERQVARMRRFDEVPLPEGFDFRSVPGLLTESLTKLERVRPRTLGQAGRISGVT 606

Query: 603 PAALNLLLIYIK 614
           PA L LL   ++
Sbjct: 607 PADLQLLWATLE 618


>gi|289450689|ref|YP_003475558.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185236|gb|ADC91661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 658

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/634 (40%), Positives = 370/634 (58%), Gaps = 25/634 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ + DV VIG GHAGCEAA  AAKLG  T L +     + ++ CNP+IGG  KG LVRE
Sbjct: 14  LSDTIDVAVIGAGHAGCEAAVAAAKLGCRTVLFSLTLDAVANLPCNPSIGGTAKGQLVRE 73

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG++AD   IQ+R+LN  KGPAV+ PR Q DR LY+  M+  + +  NL + Q
Sbjct: 74  IDALGGVMGKIADKCAIQYRMLNSSKGPAVQSPRAQIDRRLYQETMKSYLETVPNLHLFQ 133

Query: 122 GEVAGF--NTEKNI--------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EV      TE  I        +S +V ++ ++  C  V++ TGT+L G + IG+    +
Sbjct: 134 AEVVNILIETENEIESDLKLGKVSGVVTRNGAIFTCKKVIIATGTYLAGKVFIGEHNYAS 193

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           G     P+  L  +         R KTGTP R++  ++ + + E Q  D+ L  FSF  +
Sbjct: 194 GPDNSQPAAELAINLRNLGLPLRRFKTGTPVRVNKYSVDFKQMESQTPDKDLWRFSFDYE 253

Query: 232 KITNR----QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
               +    Q  C +T T  +T  II EN+  S +YSG I+  GPRYCPSIEDKIVRF +
Sbjct: 254 NSPQKDLLPQQNCWLTWTTGDTAEIIRENLYRSPLYSGQIEGIGPRYCPSIEDKIVRFPD 313

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +  HQIF+EP G  T  +Y  G+S++LPE++Q + + ++PGL +  I R  YAIEYD + 
Sbjct: 314 KLRHQIFIEPMGQTTAEMYLQGLSSSLPEDVQLKIVHSLPGLAEAVIQRSAYAIEYDCLP 373

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L   L+T+ I+GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR  +    +  SR  +Y
Sbjct: 374 PTCLKNDLQTRLIAGLYGAGQFNGTSGYEEAAAQGLVAGINAARACHLQQPLVLSRDQAY 433

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF--- 464
           IGV+IDDL +KG  EPYRM TSRAEYR+ LR DNAD RL  +G  LG   + R  R+   
Sbjct: 434 IGVLIDDLVTKGTNEPYRMMTSRAEYRLLLRQDNADERLIELGYNLGLNSQERLDRYMNK 493

Query: 465 ----AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
               AK I+  N ++  +      +  L+   +   Q G T    + L  P+ S + L  
Sbjct: 494 AAAIAKEIKRLNEVK--VTGTAAINDYLAEQGVPALQGGTTLA--QLLLRPNMSYEKLAP 549

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           I     +   ++ +  +I   Y  Y   +    ++ +  E++L+P + DY+ +  L  E 
Sbjct: 550 IDQTRPELPQVIKDGAEIRIKYQGYIALEEKRIEKFRKMERKLLPPEIDYNDIGGLRIEA 609

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           K+KLS  +P ++ QA++I G++PA +++LL+Y++
Sbjct: 610 KQKLSQFRPMSIGQAARISGVSPADISVLLVYLE 643


>gi|237709122|ref|ZP_04539603.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 9_1_42FAA]
 gi|229456818|gb|EEO62539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 9_1_42FAA]
          Length = 623

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/622 (41%), Positives = 366/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 125 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C    T
Sbjct: 185 ITRHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 245 NEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 305 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+ D RLT    KLG + + R +      +  N +    K+  + +
Sbjct: 425 MFTSRAEYRILLRQDDVDMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTFSIKA 484

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             ++    S    G  R  +     + L+ P  +I+N+    P  +            VI
Sbjct: 485 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L 
Sbjct: 542 EAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGISPSDINVLLVLLGR 623


>gi|319639994|ref|ZP_07994721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_1_40A]
 gi|317388272|gb|EFV69124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_1_40A]
          Length = 623

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/622 (41%), Positives = 366/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q  V 
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQDTVE 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  L  S
Sbjct: 125 ELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYHLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C    T
Sbjct: 185 ITRQGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCWTCFT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  +
Sbjct: 245 NEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQEL 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I  LFL
Sbjct: 305 YLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIKNLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    KLG + + R +      +  + +    K+  + +
Sbjct: 425 MFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVSRIIDFAKTFSIKA 484

Query: 486 KNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKF-------SSLVI 533
             ++    S    G  R  +     + L+ P  +I+N+    P  +            VI
Sbjct: 485 ALINDALESL---GTARLTHGCKLIDLLNRPQITIENIAGHIPAFKALLDQITDRKEEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P  L 
Sbjct: 542 EAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGISPSDINVLLVLLGR 623


>gi|312377446|gb|EFR24275.1| hypothetical protein AND_11231 [Anopheles darlingi]
          Length = 556

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/560 (43%), Positives = 362/560 (64%), Gaps = 22/560 (3%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+THK STIG MSCNP+ GG+GKGHL+RE+DALDG+ GR  D +G+Q++VLN +
Sbjct: 1   MGARTLLVTHKRSTIGEMSCNPSFGGIGKGHLLREVDALDGVCGRCCDRSGVQYKVLNRR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIVMQDN 142
           KGPAV GPR Q DR LY+  +Q+E+    NL +I+  V   +   +    +++ + + + 
Sbjct: 61  KGPAVWGPRAQIDRVLYKREVQQELARTPNLTIIEASVEDIDHVHDDHGAVLTGVKLANG 120

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
             +  +++V+TTGTFLRG I+IG    PAGR+GD P+  L  S  +  F  GRLKTGTP 
Sbjct: 121 QTVTTTSLVITTGTFLRGQINIGLDTRPAGRIGDEPAIGLAKSIEQLGFRLGRLKTGTPP 180

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKH 259
           R+   +I ++   +   D+  +PFSF+ D++    ++Q++C +T+T    + I+  N+  
Sbjct: 181 RIHRDSIRFEVLARNPGDDPPVPFSFLNDRVWLDADQQLDCFLTQTTPAVNEIVKRNLHC 240

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           +   + ++   GPRYCPSIE K++RFG +  HQI+LEPEG ++D++YPNG+S  LPEE Q
Sbjct: 241 NRHVTEELT--GPRYCPSIESKVLRFGHKL-HQIWLEPEGFDSDLIYPNGLSCTLPEEEQ 297

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
            Q +R + GLEK  ++RPGY +EYD+++P+EL+PTLETK++ GLFLAGQINGTTGYEEAA
Sbjct: 298 VQLVRCLFGLEKAEVVRPGYGVEYDFVDPRELYPTLETKRVRGLFLAGQINGTTGYEEAA 357

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           AQGL+AG N+A K+     +  SRT++Y+GV++DDLT+ G  EPYRMFTSRAE+R+SLRP
Sbjct: 358 AQGLLAGANAAAKALSKPPLTISRTEAYLGVLVDDLTTLGTNEPYRMFTSRAEFRLSLRP 417

Query: 440 DNADNRLTPIGMKLGCIGERRQKRF----AKYIQEYNFLRSLLKSLVLTSKNLSSTSISF 495
           DNAD RLT  G  +G + E R +R      +  +    LR + K    +++  ++  +  
Sbjct: 418 DNADLRLTEKGYAIGLVSEERYRRTISIRERIAKAMEVLREIRKG---SNQWKAAMDLPA 474

Query: 496 KQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKF---SSLVIERLQIESSYAAYTGRQM 550
            +    ++A+E L  S  D + + L +  PD   +      +  RL+IE+ YA     Q 
Sbjct: 475 AKASIFKSAFEMLAISTDDITTERLCATEPDTFGWIRDDPELCRRLKIEALYALSIADQS 534

Query: 551 IEAKEIKFEEKRLIPKDFDY 570
            E  E++  E   IP   DY
Sbjct: 535 REVDEVQRNEALRIPDTIDY 554


>gi|212550623|ref|YP_002308940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548861|dbj|BAG83529.1| glucose inhibited division protein A [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 624

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/622 (42%), Positives = 362/622 (58%), Gaps = 14/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAA+ AA LG+ T LIT   + I  MSCNPA+GG+ KG ++REIDAL
Sbjct: 5   YDVIVIGAGHAGCEAASAAANLGSKTLLITMDMNRIAQMSCNPAVGGIAKGQIIREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-SQENLDVIQGEV 124
            G MG +AD   IQFR+LN  KGPA+  PRTQ DR  + +   RE+L S  NL + Q  V
Sbjct: 65  GGQMGLIADQTSIQFRMLNRSKGPAMWSPRTQNDRVEF-VKKWREVLDSIPNLFIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   I   +    +   +   +VL  GTFL G+++IGK KI  GRM +  S  +  
Sbjct: 124 TSLIIRNGIAIGVKTILDVEFQARAIVLAVGTFLNGLLYIGKSKISGGRMSEPASFGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
             ++  F   R+KTGTP R+DG++I +   E+Q  +     FS++ D I    +Q+ C  
Sbjct: 184 QLVELGFKKSRMKTGTPVRIDGRSIDFSLMEEQKGEVDFHKFSYL-DFIRRPMKQLSCWT 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           + TN   H ++ + +  S +Y+G IK  GPRYCPSIE KIV F  +  H +FLEPEG+NT
Sbjct: 243 SHTNKACHGVLQDGLSESPLYNGKIKGIGPRYCPSIETKIVTFSYKEQHPLFLEPEGINT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP  IQ   ++ IP      I RPGYAIEYD+ +P +L  +LETK I  
Sbjct: 303 QEYYLNGFSSSLPIFIQLLALKKIPAFRNARIYRPGYAIEYDFFHPTQLNHSLETKLIKN 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AGIN+    +       +R ++YIGV+IDDL +KGV E
Sbjct: 363 LFFAGQINGTTGYEEAGAQGLIAGINAHINVHNEKSFILARNEAYIGVLIDDLVTKGVDE 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYRI LR DNAD RLT    ++G   + R     +  +  + +   ++   
Sbjct: 423 PYRMFTSRAEYRILLRQDNADVRLTEKSYQIGLADKSRYNALVEKKKRIDNIIDFIRLYS 482

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSL---VI 533
           +  K ++S   +I            + L  P  +I  +  + P  R    K S     +I
Sbjct: 483 VDPKQVNSALEAIGTSPLRNKVKLTDLLLRPQLTINIISFLIPIVREQIDKISDCKEEII 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++I   Y  Y  R+ I A++I   E   I    DYS++ +LS E K+KL  + P  + 
Sbjct: 543 EAVEILIKYEGYIAREKIVAEKINRLENIKIRGRIDYSTVQSLSTEAKQKLISIDPETIA 602

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P  +N+LL+ +++
Sbjct: 603 QASRIPGVSPNDINVLLVLLRR 624


>gi|149919588|ref|ZP_01908067.1| glucose inhibited division protein A [Plesiocystis pacifica SIR-1]
 gi|149819531|gb|EDM78959.1| glucose inhibited division protein A [Plesiocystis pacifica SIR-1]
          Length = 579

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/613 (40%), Positives = 337/613 (54%), Gaps = 50/613 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +IV+G GHAG EAA   A+LG +  ++T    TIG   CNP+IGG+ KGHLV EI AL G
Sbjct: 1   MIVVGAGHAGLEAAFAGARLGVAVTVVTGSVGTIGQTPCNPSIGGVAKGHLVHEIHALGG 60

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
            MG+ ADA  I  R LN+ KGPAV   R Q D+  Y    Q  IL    + V +G V   
Sbjct: 61  FMGKAADACAIHGRKLNLSKGPAVHSTRLQVDKLRYGAFAQAAILDHPGVVVREGLVVAV 120

Query: 128 NT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   ++ + + D   +    VV+TTGTFL GV+H G  K P GR+G++P+  L    
Sbjct: 121 EVGDDGAVTGVRLADGERVAGQAVVVTTGTFLGGVLHTGSTKTPGGRVGEAPATELSTQL 180

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI---ECGIT 243
               F   RLKTGTP RLD  TI W   E Q +D+    F    +     ++    C IT
Sbjct: 181 ATLGFRLVRLKTGTPPRLDRTTIDWGALEAQGSDDPFPRFCAPDEPDAPPRLPEAHCYIT 240

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H +I E +  S +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPEGL  D
Sbjct: 241 HTNAEVHALIRERLYESPMYSGQIEGVGPRYCPSIEDKVVRFADRERHQIFLEPEGLQPD 300

Query: 304 -VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            ++YPNGIST+LP E+Q + +R I GLE   I+RPGYA+EYD ++ + L   L +  I G
Sbjct: 301 ALIYPNGISTSLPAEVQVEMVRGIAGLEAARIVRPGYAVEYDAVDARALNHALASDAIPG 360

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQINGT+GYEEA  QGL+AG N+A +    + +   R  +Y GV++DDL + G  E
Sbjct: 361 LAFAGQINGTSGYEEAGIQGLLAGANAALRLLGREPLELGRDQAYGGVLVDDLVTVGCDE 420

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL  I    G I   R +R  + ++             
Sbjct: 421 PYRMFTSRAEYRLLLREDNADERLAGIAHAHGLIPTARWERILRRLER------------ 468

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
                     ++   DG+     E                       + ++ + +   +Y
Sbjct: 469 ----------VAACVDGRANEEGE----------------------EAWIVAKARARKTY 496

Query: 543 AAYTGRQMIEAKEIKFEEKRL-IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           A Y  RQ  E   I+ E   L +P D DY ++  L+ E  E+L+ ++P +  QA++I GM
Sbjct: 497 AGYLERQRREVARIRGETGNLPLPADLDYFAIEGLTRESAERLARVQPSSTAQAARIPGM 556

Query: 602 TPAALNLLLIYIK 614
           TPAAL+ +  + +
Sbjct: 557 TPAALSCVWAHAR 569


>gi|162606514|ref|XP_001713287.1| glucose inhibited division protein A [Guillardia theta]
 gi|12580753|emb|CAC27071.1| glucose inhibited division protein A [Guillardia theta]
          Length = 649

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/625 (40%), Positives = 375/625 (60%), Gaps = 17/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGH+GCEAA  ++K G  T LIT     I    CNP+IGG  K +LV E+DA
Sbjct: 31  SYDVIVVGGGHSGCEAAVASSKSGCKTLLITLNLDKIAWQPCNPSIGGPAKSNLVHEVDA 90

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G++G++ D   +  ++LN+ KGPAV   R Q D+  Y   M++ I S+ENL + +G V
Sbjct: 91  IGGIIGKITDRTYLHKKLLNISKGPAVWALRAQTDKREYSEEMKKFIDSEENLSIQEGMV 150

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                +  K II  I        RC +VVLTTGTFL G I +G  K+ AGR G+  S  L
Sbjct: 151 TQIFLDNNKKIIG-IGTHFGGFYRCRSVVLTTGTFLGGTIWVGPKKLSAGRSGEMASIGL 209

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECG 241
             + +K +   GRLKTGTP R+D +TI + K E Q +D+  + FSF T +  +R+ + C 
Sbjct: 210 TENLIKSNIKFGRLKTGTPPRIDSRTIDYSKLEIQLSDQNELWFSFDTREWNSRETLPCY 269

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T+T +ET  II +N+  S  Y G ++S GPRYCPSIEDKIVRF  ++ HQIFLEPEG N
Sbjct: 270 LTKTTIETKNIIKQNLHLSPKYGGFMRSTGPRYCPSIEDKIVRFSNKDEHQIFLEPEGRN 329

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            + +Y  G ST  PE +Q   IRTI GL    I+RP Y+++YD++   +L  TL +  I 
Sbjct: 330 INEIYLQGFSTGFPENLQENLIRTIEGLHSCRILRPAYSVDYDFLPATQLEKTLMS-SIE 388

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+ GTTGYEEA+AQG+V G+N++  + K   +  SR  S+IG MIDDL ++ + 
Sbjct: 389 GLFFAGQVCGTTGYEEASAQGIVTGLNASLYAQKKSLLTISRQGSFIGTMIDDLVTRSLN 448

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSR+EYR+ LR DNAD RL P+G K G + +     F K +++      +L + 
Sbjct: 449 EPYRVLTSRSEYRMLLRGDNADIRLKPLGRKYGLVDDISWINFKKKVRDIKNKSLILNNT 508

Query: 482 VL-TSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIE 534
           ++  + N+S       ++  K+D    +    +S P+ S  +L +I   +++    L I 
Sbjct: 509 IIKINSNISGIIENELNVILKKD---LSLASMISRPNVSFDSLINIGIINSKNIEKLRI- 564

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            L+ E  Y  Y  RQ  +   ++      I K+F++  +  +S E +EKLS ++P  L +
Sbjct: 565 -LETEIKYQNYITRQNNQILSLERSLDLKIDKNFNFMDVNQISKEGREKLSKIRPKTLRE 623

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           A+ I G++ + L++LLI ++K   K
Sbjct: 624 ATCIGGISSSDLHILLIIVEKYKFK 648


>gi|29348677|ref|NP_812180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|298387045|ref|ZP_06996599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 1_1_14]
 gi|81170521|sp|Q8A2N7|MNMG_BACTN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29340582|gb|AAO78374.1| glucose-inhibited division protein A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298260195|gb|EFI03065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 1_1_14]
          Length = 628

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/623 (42%), Positives = 369/623 (59%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  L  S
Sbjct: 125 ELLVENGEVVGLVTLWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D ++I +D  + Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGIAYGRMKTGTPVRIDARSIHFDLMDTQDGECDFHKFSFMNTSTRHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ +P  + + I RPGYAIEYDY +P +L  +LE+K I  LF
Sbjct: 305 LYLNGFSSSLPMDIQIAALKKVPAFKDIVIYRPGYAIEYDYFDPTQLKHSLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT     LG   E R    + +     Q  NF ++    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAYHLGLAREDRYQLMKTKKEALEQIVNFAKNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K ++     
Sbjct: 485 PALINDALEKLGTTPLRQGCKL---IEILNRPQITIENIAEHVPAFQRELEKATAADSDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++KL  + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQKLVKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|195151127|ref|XP_002016499.1| GL10454 [Drosophila persimilis]
 gi|194110346|gb|EDW32389.1| GL10454 [Drosophila persimilis]
          Length = 479

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/441 (50%), Positives = 306/441 (69%), Gaps = 13/441 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 30  YDVVVIGGGHAGTEASAAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 89

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ GR  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S +NL++    V 
Sbjct: 90  DGVCGRCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKKAVQKELHSTQNLEIRAAAVD 149

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    +    + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGRMGD+P+ 
Sbjct: 150 NILIEDEQHQHRRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRMGDAPAK 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237
           +L  +  +  F  GRLKTGTP R+   ++ + + E+   D+   PFSF+   +      Q
Sbjct: 210 ALGEAIDRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEGDDPPTPFSFLNSHVWLPAKEQ 269

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T    + I+  N+  +   + +I   GPRYCPSIE KI+RFG R  HQ++LEP
Sbjct: 270 LPCHLTYTTPLVNDIVRNNLHVNRHVTEEIT--GPRYCPSIESKILRFGARV-HQVWLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ +VYP GIS  LP E Q + +  I GLE   +++PGY +EYD+I+P+ELFPTLET
Sbjct: 327 EGLDSPLVYPQGISCTLPHEQQVELVHAIKGLEHAEVVQPGYGVEYDFIDPRELFPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC--ICFSRTDSYIGVMIDDL 415
           K++ GLF AGQINGTTGYEEAAAQG+VAG N+A K+   D   +  SRT+ YIGV++DDL
Sbjct: 387 KRMPGLFFAGQINGTTGYEEAAAQGIVAGANAAGKTRHADGRQLTISRTEGYIGVLVDDL 446

Query: 416 TSKGVLEPYRMFTSRAEYRIS 436
           TS G + PYRMFTSRAE+R+S
Sbjct: 447 TSLGTMSPYRMFTSRAEFRLS 467


>gi|162446948|ref|YP_001620080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acholeplasma laidlawii PG-8A]
 gi|189039327|sp|A9NEC4|MNMG_ACHLI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161985055|gb|ABX80704.1| glucose inhibited division protein A [Acholeplasma laidlawii PG-8A]
          Length = 617

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/618 (40%), Positives = 364/618 (58%), Gaps = 16/618 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I++G GHAG EAA   AK+  +T LIT   + + ++ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDGIIVGAGHAGVEAALAMAKMKLNTLLITGDLTKVATLPCNPSIGGPAKGIVVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD + IQ ++LN  KGPAVR  R Q D+  Y   M   + +  NL ++QG V 
Sbjct: 63  GGQMAKSADLSQIQMKMLNPSKGPAVRALRAQIDKLKYPKVMLDVLQNTPNLTLLQGFVD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  + ++D S +   TV++TTGT+L   I IG  K  +G  G+  +  + N 
Sbjct: 123 TLIVEDNTVKGVNLEDGSQVFAQTVIITTGTYLGSQILIGHEKTSSGPNGERTTRGISNQ 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF---MTDKITNRQIECGI 242
                F+  RLKTGTP R+   +I + KT  Q  D     FS    +TD     Q    +
Sbjct: 183 LKNLGFEMLRLKTGTPPRIARDSIDYSKTVPQPGDGVFQTFSHDSPITD--LGHQEFSYL 240

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             T+ +T  II  N+  SA+Y G ++  GPRYCPSIEDK VRF +++ HQIF+EPE ++ 
Sbjct: 241 IHTSPDTKDIIFNNLDASAMYGGVVEGVGPRYCPSIEDKFVRFKDKDRHQIFIEPESMDL 300

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+ST++P+ IQ Q +R++PG+E   I+R  YAIEYD INP++L+ +LETK I  
Sbjct: 301 NEMYIQGLSTSMPKHIQEQMVRSLPGMENARIVRYAYAIEYDAINPRQLYQSLETKVIHN 360

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAA QGL+AGIN+  K      +   R ++YIGV+IDDL +KG  E
Sbjct: 361 LFCAGQINGTSGYEEAAGQGLMAGINAGLKVQGKKPLVLKRDEAYIGVLIDDLITKGTSE 420

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAE+R+ LR DNAD RL   G ++G + +   +RF     +   L+ +++   
Sbjct: 421 PYRLLTSRAEHRLLLRNDNADIRLRDYGYQIGLVDDATYERFE---HKKIALKEMIERAK 477

Query: 483 LTSKNLSSTSISFKQDGKTRTAYE------FLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            T  N +  ++++     +   YE       L  P+  I+ L    P    ++  + E+L
Sbjct: 478 STKINPTEENLNYLASVNSSPIYEGVTVFKLLERPELKIETLKHFLPS--DYNHEIYEQL 535

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +   EA ++   E R IP D +Y S+  +S E KEKLS +KP  L QA+
Sbjct: 536 EIYIKYDGYIEKARREADKLLRYESRFIPNDINYHSIHNISAEAKEKLSKIKPETLGQAT 595

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ P  +++LL+Y++
Sbjct: 596 RILGVGPTDVSMLLVYLE 613


>gi|40557589|gb|AAR88089.1| glucose inhibited division protein A [Sweet potato little leaf
           phytoplasma]
          Length = 620

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/598 (42%), Positives = 352/598 (58%), Gaps = 15/598 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y  IV+GGGHAG EAA   AK    T LIT     I S  CNP+IGG  KG +VREID
Sbjct: 31  KYYQSIVVGGGHAGVEAALALAKQSHKTLLITGNLQQIASYPCNPSIGGPAKGVVVREID 90

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+ AD   IQ ++LN  KGPAVR  R Q D+  Y + +   +    NL +++  
Sbjct: 91  ALGGIMGKAADICQIQMKMLNTSKGPAVRSLRAQIDKIKYPMFILETLKKTLNLTLMEAL 150

Query: 124 VAGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V      +N   +  + + +  +I    V+LTTGT+L   I IG   I +G      + +
Sbjct: 151 VEHLIIPENDLCVKGVKLTNGEVIYSDIVILTTGTYLTSKILIGSQVINSGPNKAPTTYN 210

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIE 239
           +    +KF  +  RLKTGTP R+   TI + +T +Q  D+ L  FS   + D +  +++ 
Sbjct: 211 ISKQLIKFGMEVIRLKTGTPPRVHKDTIDYTQTVEQSGDKVLQTFSSPPVIDNLGVQKL- 269

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH++I +N+  SA+YSG + S GP YCPSIEDKIVRF ++N HQ+F+EPE 
Sbjct: 270 CFLTHTNENTHQLIRQNLHKSAMYSGYVCSSGPPYCPSIEDKIVRFYDKNRHQLFIEPES 329

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +D +Y  G+S ++P E+Q + ++TIP   K  II+  YAIEYD  NP +LF TLE+KK
Sbjct: 330 LLSDEMYLQGLSMSMPSEVQEKILKTIPAFSKAKIIKYAYAIEYDAFNPNQLFHTLESKK 389

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEAA QGL+AGIN+A K          R ++YIGV+IDDL +KG
Sbjct: 390 IKNLFLAGQINGTSGYEEAACQGLIAGINAALKLQNKSPFILKRNEAYIGVLIDDLINKG 449

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +          + N+L+  L 
Sbjct: 450 TYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNKQMQINYLKEKLH 509

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSLVIERL 536
           +  L + +L   +I+   D +  + Y+ L   D     + N F     A ++S  V+E++
Sbjct: 510 NFYLDADSLYKFNIN--SDSRRISLYQLLKRSDLKEDILNNFF-----ASQYSVDVLEQV 562

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL  +KPFN+ Q
Sbjct: 563 GIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKLXKIKPFNIAQ 620


>gi|148982566|ref|ZP_01816806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrionales bacterium SWAT-3]
 gi|145960411|gb|EDK25802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrionales bacterium SWAT-3]
          Length = 450

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/448 (50%), Positives = 293/448 (65%), Gaps = 1/448 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH   T+G MSCNPAIGG+GKGHLV+E+DA+ GLM +  D AGIQFR LN  KGPAVR
Sbjct: 1   LLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAMGGLMAQAIDHAGIQFRTLNASKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QADR LY+  ++  + +  NL + Q  V     E++ +  +V Q     R   VVL
Sbjct: 61  ATRAQADRALYKAFVRNVLENTPNLTLFQQSVDDLIVEQDQVVGVVTQMGLKFRADAVVL 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           T GTFL G IHIG      GR GD PS +L +      F   RLKTGTP R+D +++ + 
Sbjct: 121 TVGTFLGGKIHIGMESSSGGRAGDPPSIALADRLRDLPFRVDRLKTGTPPRIDARSVDFS 180

Query: 213 KTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
           + E Q  D     FSFM  +    RQI C IT TN  TH +I  N+  S +Y+G I+  G
Sbjct: 181 ELEVQHGDNPTPVFSFMGSRAQQPRQIPCYITHTNENTHDVIRANLDRSPMYAGVIEGIG 240

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK++RF ++N HQIF+EPEGL T  +YPNGIST+LP ++Q Q +R++ G E 
Sbjct: 241 PRYCPSIEDKVMRFADKNSHQIFIEPEGLTTHELYPNGISTSLPFDVQVQIVRSMKGFEN 300

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
            +I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQGL+AG+N++ 
Sbjct: 301 AHIVRPGYAIEYDFFDPRDLKLTYETKFIKGLFFAGQINGTTGYEEAAAQGLMAGLNASL 360

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +   +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DNAD RLT    
Sbjct: 361 FTQGKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADIRLTEKSR 420

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           +LG + + R  RF + +      R  LK
Sbjct: 421 ELGLVDDARWARFNEKMDNMEKERQRLK 448


>gi|255013155|ref|ZP_05285281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_7]
          Length = 625

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 372/624 (59%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q  V
Sbjct: 64  LGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGMLENMPNLSIWQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  L  
Sbjct: 124 QELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
             +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C  T
Sbjct: 184 QLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSCWTT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I  L
Sbjct: 304 EYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQIRNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLG--------CIGERRQKRFA--KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    ++G         + E+++ R A  ++ + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAETYSV 483

Query: 474 LRSLLKSLV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               + S +  L +  LS     F    + +T  E L+    +++      P +RK    
Sbjct: 484 KPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRK--EE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P  
Sbjct: 542 IIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPDT 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ + +
Sbjct: 602 IAQASRIPGISPSDINILLVLLGR 625


>gi|261417286|ref|YP_003250969.1| glucose inhibited division protein A [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373742|gb|ACX76487.1| glucose inhibited division protein A [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327734|gb|ADL26935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 633

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/641 (41%), Positives = 368/641 (57%), Gaps = 32/641 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   +DV+V+GGGHAG EA   A K+G  TA++T   + IG MSCNPA+GG+ KG +VR
Sbjct: 1   MIIAEFDVVVVGGGHAGIEATHAAWKIGVKTAMLTMDLNAIGRMSCNPAVGGVAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           +IDAL GLMG + D AGIQFR+LN+ KGPAV GPR Q D + Y    +  + S   L +I
Sbjct: 61  DIDALGGLMGLLTDKAGIQFRMLNMSKGPAVWGPRAQCDMKYYSEVARETMESLPGLTLI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGE+A F    +    +++ +        +V+T+GTFL   +  G      GR+G+  ++
Sbjct: 121 QGELASFERMNDGRLELILLNGDRYITRAIVVTSGTFLASKMFTGLETSIGGRVGEPSAD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS------FMTDKIT 234
            L     K      RLKTGTP+RLD  +I +++ + Q  DE   P S         DK  
Sbjct: 181 KLSECLAKNGIRLRRLKTGTPSRLDPDSIDFNECDVQHGDEHPWPMSDRHFDGATPDKFW 240

Query: 235 NRQIE--------CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
             QI         C ITRTN++TH I+    K S ++SG I   GPRYCPSIEDKI RFG
Sbjct: 241 GDQINKFIRNDCVCWITRTNIKTHDILRSGFKDSPMFSGRIHGKGPRYCPSIEDKINRFG 300

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R+GHQ+FLEPE  +   VY NG S++LP +IQ   I TIPGL +  +++ GYA+EYD +
Sbjct: 301 DRDGHQLFLEPEQADIGRVYINGFSSSLPADIQLAAIHTIPGLTRAKVLQIGYAVEYDSV 360

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +  +L+PT E K + GL+ AGQ+ GT+GYEEAA QGL+AGIN+A K    +     R++S
Sbjct: 361 DATQLYPTFECKNVPGLYFAGQVCGTSGYEEAAGQGLMAGINAALKVKGEEPFILGRSES 420

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y+GVM+DDL +  + EPYRMFTSRAEYR+ LR DNA+ RL     K+G I +R    +  
Sbjct: 421 YLGVMVDDLVNILLDEPYRMFTSRAEYRLFLRSDNAEMRLKEKARKIGMISDR---DWED 477

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT----RTAY-EFLSYPDFSIQNLFSI 521
           + +  + + SL      TS      +   +  G+     RT +   L  P    +  F +
Sbjct: 478 WTRRRDLMASLKTQFTETSATPEEANTILEAGGQALASERTRWINVLRRPGIDPETFFKV 537

Query: 522 -CPDARKFSSLVIERLQI----ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
             PDA      +  R Q     E  YA +  RQ  E  + K  EK  +  DFDY S+ A+
Sbjct: 538 AAPDAN-----ITRRDQWYMYAEELYAGFFDRQEREIDDQKKMEKVKLSPDFDYMSITAI 592

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           S E +++L+  KP  L QAS++ G+ PA + +L  ++   T
Sbjct: 593 SIESRQRLNAHKPLTLGQASRVPGVRPADITVLAHWLDSRT 633


>gi|320527142|ref|ZP_08028329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Solobacterium moorei F0204]
 gi|320132470|gb|EFW25013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Solobacterium moorei F0204]
          Length = 624

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/622 (39%), Positives = 369/622 (59%), Gaps = 17/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+IVIGGGHAG EAA  AA+L  +T L+T K   IG M CNP++GG  KG +VREIDAL
Sbjct: 4   FDIIVIGGGHAGIEAALAAARLKKNTCLLTLKIENIGKMPCNPSVGGPAKGIVVREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD   +QF++LN  KGP VR  R Q+D+  Y+  MQ   L QENL VI+G  +
Sbjct: 64  GGQMAITADKTALQFKMLNGAKGPGVRALRVQSDKLAYKKMMQDVCLKQENLTVIEGMAS 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             N   N ++ + ++D +++    V++TTGT++ GV  I     P G   +  +  L  S
Sbjct: 124 KLNVTNNKVTGVTLKDGTVLNAKIVIVTTGTYMAGVNMISSEVTPGGPDLEPTTGDLSES 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIECG 241
             +    T RLKTGTP R+   +I + KT+ +   E  + FS +T +      ++Q+ C 
Sbjct: 184 LRELGLRTFRLKTGTPPRILRSSIDFSKTKLEPGTEGFLHFSELTTREDVLPYDKQVSCH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH  I+EN+  S++YSG +K  GPRYCPSIEDK+VRF ++  H +FLEPE L 
Sbjct: 244 MTYTTPETHEYILENLNKSSMYSGVVKGVGPRYCPSIEDKLVRFQDKPRHLLFLEPESLE 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST+LP +IQ + + ++PG E   I +  YAIEYD I+P ++ P+ E+K I 
Sbjct: 304 LDTIYLQGFSTSLPRDIQEKMVHSLPGFENAIIKKYAYAIEYDAIDPIQMKPSFESKIIE 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ+NGT+GYEEAA QGL+AGIN+  K +  + +  +R ++YIGV++DDLT+KG L
Sbjct: 364 NLFTAGQVNGTSGYEEAAGQGLLAGINACMKLDGKEPLILARNEAYIGVLVDDLTTKGTL 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNAD RL   G ++G +    Q+R+  Y+ +   ++ L + L
Sbjct: 424 EPYRLLTSRAEFRLLLRHDNADQRLIEYGRQIGLVS---QERYDAYLAKMENIKKLEQHL 480

Query: 482 VLTS-------KNLSSTSISFKQDGKTR-TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             T+        +   TS+ ++ D        + +  P+ + + L +      +    + 
Sbjct: 481 SETTFVQDEEKVHAYLTSLGYESDAHIGINGIDLVRRPNVTTKELLATI--GEEADEEIA 538

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            +  IE  YA Y  +   EA ++K  +   +  +F+Y  +  LS E ++KL   KP  + 
Sbjct: 539 NQCDIELKYAGYIEKAKREANKLKEMDSIKLGVNFNYDEVDNLSIEGRQKLMKYKPATMG 598

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QA +I G+ PA + +L I IK+
Sbjct: 599 QAFRISGVNPADIAVLAIAIKQ 620


>gi|262383154|ref|ZP_06076291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_33B]
 gi|301311746|ref|ZP_07217671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 20_3]
 gi|262296032|gb|EEY83963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_33B]
 gi|300830306|gb|EFK60951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 20_3]
          Length = 625

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 372/624 (59%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q  V
Sbjct: 64  LGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  L  
Sbjct: 124 QELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
             +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C  T
Sbjct: 184 QLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSCWTT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNETCHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I  L
Sbjct: 304 EYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQIRNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLG--------CIGERRQKRFA--KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    ++G         + E+++ R A  ++ + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAETYSV 483

Query: 474 LRSLLKSLV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               + S +  L +  LS     F    + +T  E L+    +++      P +RK    
Sbjct: 484 KPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRK--EE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P  
Sbjct: 542 IIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPDT 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ + +
Sbjct: 602 IAQASRIPGISPSDINILLVLLGR 625


>gi|253568978|ref|ZP_04846388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 1_1_6]
 gi|251840997|gb|EES69078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 1_1_6]
          Length = 628

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 262/623 (42%), Positives = 369/623 (59%), Gaps = 20/623 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q  V 
Sbjct: 65  GGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQDTVC 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  L  S
Sbjct: 125 ELLVENGEVVGLVTLWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQLTES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GR+KTGTP R+D ++I +D  + Q  +     FSFM     + +Q++C    
Sbjct: 185 IARHGIAYGRMKTGTPVRIDARSIHFDLMDTQDGECDFHKFSFMNTSTRHLKQLQCWTCY 244

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E HRI+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 245 TNEEVHRILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGETTQE 304

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ +P  + + I RPGYAIEYDY +P +L  +LE+K I  LF
Sbjct: 305 LYLNGFSSSLPMDIQIAALKKVPAFKDIVIYRPGYAIEYDYFDPTQLKHSLESKIIKNLF 364

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV EPY
Sbjct: 365 FAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGVDEPY 424

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLKS 480
           RMFTSRAEYRI LR D+AD RLT     LG   E R    + +     Q  NF ++    
Sbjct: 425 RMFTSRAEYRILLRMDDADMRLTERAYHLGLAREDRYQLMKTKKEALEQIVNFAKNYSMK 484

Query: 481 LVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL---- 531
             L +  L     +  +Q  K     E L+ P  +I+N+    P    +  K ++     
Sbjct: 485 PALINDALEKLGTTPLRQGCKL---IEILNRPQITIENIAEHVPAFQRELEKATAADSDR 541

Query: 532 ---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              ++E  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++KL  + 
Sbjct: 542 KEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQKLMKID 601

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++P+ +N+LL+
Sbjct: 602 PETIAQASRIPGVSPSDINVLLV 624


>gi|298373957|ref|ZP_06983915.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_19]
 gi|298268325|gb|EFI09980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_19]
          Length = 625

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 372/624 (59%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q  V
Sbjct: 64  LGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  L  
Sbjct: 124 QELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
             +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C  T
Sbjct: 184 QLVSLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSCWTT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGEATQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I  L
Sbjct: 304 EYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQIRNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLG--------CIGERRQKRFA--KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    ++G         + E+++ R A  ++ + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTEKSHQMGLAKQDRYDLLREKKESRDAIIRFAETYSV 483

Query: 474 LRSLLKSLV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               + S +  L +  LS     F    + +T  E L+    +++      P +RK    
Sbjct: 484 KPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRK--EE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P  
Sbjct: 542 IIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPDT 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ + +
Sbjct: 602 IAQASRIPGISPSDINILLVLLGR 625


>gi|282856278|ref|ZP_06265559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pyramidobacter piscolens W5455]
 gi|282585855|gb|EFB91142.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pyramidobacter piscolens W5455]
          Length = 630

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/613 (41%), Positives = 349/613 (56%), Gaps = 7/613 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAGCEAA  AA +GA T +I      +  M CNP+IGG  KGHLVREI A
Sbjct: 8   TFDVIVVGGGHAGCEAALAAAHMGARTLMIVQDVDHVAHMPCNPSIGGPAKGHLVREISA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+  R ADAA +  R LN  KGPAVR  R Q D   Y     RE+++  NL V Q +V
Sbjct: 68  LGGVQARAADAAAMMMRWLNTSKGPAVRALRAQCDLHDYHGYYLRELVNCPNLRVFQDQV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +  +         V+LTTGT L G +H+G +   +G MG  P+  L  
Sbjct: 128 DALWVENDRLKGVKTRFQLSFEAPRVILTTGTHLGGRVHVGLVNFASGPMGQQPAVGLSR 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      RLKTGT  RL   +I W   E Q  D   + F F  +K   R+I CG+ R
Sbjct: 188 SIAELGIVMQRLKTGTTPRLYRDSIDWSHIELQEGDPHPVGFDFWDEKKIRREISCGMIR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  THRII +N+  S I  G+I   GPRYCPSIE K++ F E++ H IFLEP    +  
Sbjct: 248 TNARTHRIIKDNLDRSPIVHGEITGVGPRYCPSIESKVMAFPEKDSHPIFLEPVARGSVE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y    ST+LP ++Q    RT+PG E+  I+RPGYAIEYD I+P++L  +LE K++ GLF
Sbjct: 308 IYVQNFSTSLPFDVQIAMTRTLPGCERAVILRPGYAIEYDAIDPQQLSLSLEMKRLPGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA+QGL+AG+N+       + +   R ++Y+GV++DDL +KG  EPY
Sbjct: 368 CAGQINGTSGYEEAASQGLLAGVNAVLSMRGEEPLVLRRHEAYLGVLVDDLVTKGTHEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSLVL 483
           RM TSR E+R+ LR DNAD RL PIG +LG + + + ++   ++ +E   + +L +  V 
Sbjct: 428 RMLTSRCEHRLLLRHDNADRRLAPIGRRLGLLDDEKWRQLCERWEREDQEIETLERVHVA 487

Query: 484 -TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS- 541
            T  N        +   +  +A E L  P+   + L  I PD R       E   +E++ 
Sbjct: 488 PTPANAVLAEEGLRPLERGMSAAELLRRPEVDYELLCRIVPDGRLKGE---EAANVETAV 544

Query: 542 -YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ     ++   E   IP  FDY  L  L  E +EKL  ++P  L QA +I G
Sbjct: 545 KYQGYIARQQAAVDKMLRLESMKIPVGFDYGELRGLLAESREKLERVRPMTLGQAGRISG 604

Query: 601 MTPAALNLLLIYI 613
           +TP  L  L +Y+
Sbjct: 605 VTPTDLQHLALYL 617


>gi|288801783|ref|ZP_06407225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica D18]
 gi|288335825|gb|EFC74258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica D18]
          Length = 598

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/606 (40%), Positives = 353/606 (58%), Gaps = 25/606 (4%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA+T L+T   + IG MSCNPA+GG+ KG +VREIDAL G MG V DA  IQF +LN  
Sbjct: 1   MGANTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDALGGYMGLVTDATAIQFHMLNRS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV  PR Q DR  +    +  +   +NLD+ Q +      E   +  I       I 
Sbjct: 61  KGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIFQDQADELLVENGKVLGIKTIWGIDIY 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TV++T GTFL G++HIGK K+  GR  +   ++   S  +      R+KTGTP R+D 
Sbjct: 121 ARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHNFTESITRHGIRADRMKTGTPVRIDR 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +++ +D+ E Q  +     FSF        Q+ C    TN E H ++   +  S +++G 
Sbjct: 181 RSVHFDEMEPQPGETDYHQFSFYGPHRHLPQLPCWTCNTNEEAHEVLRRGVADSPLFNGQ 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+S GPRYCPSIE K+V F ++N H +FLEPEG++T+ +Y NG S+++P E+Q + I  I
Sbjct: 241 IQSTGPRYCPSIETKLVTFPDKNSHPLFLEPEGVDTNEMYLNGFSSSMPWEVQLEAIHKI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           P L    I RPGYAIEYDY +P +L  +LE+K I GLF AGQ+NGTTGYEEA  QGLVAG
Sbjct: 301 PALRDAKIYRPGYAIEYDYFDPTQLKQSLESKVIEGLFFAGQVNGTTGYEEAGGQGLVAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           IN+A      D    +R +SYIGV+IDDLT+KGV EPYRMFTSRAEYRI LR D+AD RL
Sbjct: 361 INAALLCAGKDPFVMNRDESYIGVLIDDLTTKGVDEPYRMFTSRAEYRILLRQDDADARL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----------KNLSSTSISFK 496
           T     +G     +Q R+  ++Q+   +  +L     TS          ++L ++ I   
Sbjct: 421 TERAYNIGIA---KQDRYDWWMQKKEHINRILDFCNNTSVKPEVVNGFLEHLGTSPIK-- 475

Query: 497 QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLVIERLQIESSYAAYTGRQ 549
             G T+   + ++ P  + +NL ++ P  ++           + E  +I+  Y  Y  R+
Sbjct: 476 --GATKIV-DLVARPQVNFENLSAVIPSLKEAIEASPNRKEEIAEAAEIKLKYKGYIDRE 532

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
            + A++++  E   I   F YS L  LS E ++KL  ++P  L QAS+I G++P+ +N+L
Sbjct: 533 RVFAEKMRRLEDIKIKGHFKYSELHDLSTECRQKLEQIQPETLAQASRIPGVSPSDINVL 592

Query: 610 LIYIKK 615
           L+ + +
Sbjct: 593 LVLMGR 598


>gi|150009552|ref|YP_001304295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides distasonis ATCC 8503]
 gi|166222714|sp|A6LG59|MNMG_PARD8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149937976|gb|ABR44673.1| glucose-inhibited division protein A [Parabacteroides distasonis
           ATCC 8503]
          Length = 625

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/624 (42%), Positives = 372/624 (59%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q  V
Sbjct: 64  LGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  L  
Sbjct: 124 QELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
             +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C  T
Sbjct: 184 QLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSCWTT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG  T 
Sbjct: 244 FTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGEATQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I  L
Sbjct: 304 EYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQIRNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV EP
Sbjct: 364 FFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLG--------CIGERRQKRFA--KYIQEYNF 473
           YRMFTSRAEYRI LR D+AD RLT    ++G         + E+++ R A  ++ + Y+ 
Sbjct: 424 YRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAETYSV 483

Query: 474 LRSLLKSLV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               + S +  L +  LS     F    + +T  E L+    +++      P +RK    
Sbjct: 484 KPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRK--EE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P  
Sbjct: 542 IIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPDT 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ + +
Sbjct: 602 IAQASRIPGISPSDINILLVLLGR 625


>gi|256838284|ref|ZP_05543794.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides sp. D13]
 gi|256739203|gb|EEU52527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides sp. D13]
          Length = 625

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/625 (43%), Positives = 373/625 (59%), Gaps = 17/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGE 123
           L G MG V D   IQFR+LN  KGPA+  PR Q+DR  + +   R IL    NL + Q  
Sbjct: 64  LGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARF-IDCWRGILENMLNLSIWQDM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  L 
Sbjct: 123 VQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
              +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C  
Sbjct: 183 EQLVSLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSCWT 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG  T
Sbjct: 243 TFTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGEAT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I  
Sbjct: 303 QEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQIRN 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV E
Sbjct: 363 LFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGVDE 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLG--------CIGERRQKRFA--KYIQEYN 472
           PYRMFTSRAEYRI LR D+AD RLT    ++G         + E+++ R A  ++ + Y+
Sbjct: 423 PYRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAETYS 482

Query: 473 FLRSLLKSLV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
                + S +  L +  LS     F    + +T  E L+    +++      P +RK   
Sbjct: 483 VKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRK--E 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|330723615|gb|AEC45985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis MCLD]
          Length = 619

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/616 (41%), Positives = 366/616 (59%), Gaps = 24/616 (3%)

Query: 6   YDVIVIGGGHAGCEAA-AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++ IV+GGGHAG EA  A++       AL+T     + SM CNP+IGG  KG + REIDA
Sbjct: 8   FNAIVVGGGHAGIEAIYALSKAENLKVALVTLNKHKLASMPCNPSIGGPAKGIITREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G  +D A IQ + LN  KGPAV+  R Q D+E Y   + ++I  ++N+ +I+  V
Sbjct: 68  LGGVQGYFSDLAMIQVKYLNESKGPAVKAIRAQIDKEKYSKLILKDIKQRKNITLIEDLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   IS I ++   +I+  ++++TTGT+L   I  G+ +  +G   +  SN L +
Sbjct: 128 TKLEVKNKAISGIYLEKLGLIKTKSLIITTGTYLDSKILRGEEQYKSGPDNERTSNLLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + + E++      I FS  T +   +QI C +T 
Sbjct: 188 NLKELGFELQRLKTGTPPRIYSDSIDFSQVEREVLPLVNISFSSKTKQNIKKQISCFLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH+II EN+  S++YSG I   GPRYCPSIEDKIVRF  +  HQIF EPE    D+
Sbjct: 248 TNEETHKIINENLNRSSMYSGAINGVGPRYCPSIEDKIVRFSTKERHQIFFEPETKRQDI 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++P ++Q + IRTIPGL+   + + GYAIEYD +NP EL  +LE+KK+  LF
Sbjct: 308 MYINGMSTSMPVDVQDKLIRTIPGLKNARVAKWGYAIEYDALNPLELKRSLESKKVKNLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGLVAGIN+  K  K   I   R D YIGV+IDDL +KG  EPY
Sbjct: 368 FAGQMNGTSGYEEAAAQGLVAGINAKEKLLKKRPIEILRNDGYIGVLIDDLVTKGTKEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+     K G I     K + K I++Y  +  ++  L   
Sbjct: 428 RMLTSRAEYRLILRNDNADIRMAKYAKKTGMIS---LKEYEKIIEKYRKIDKMIDKL--- 481

Query: 485 SKNLSSTSISFKQ-----DGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQI 538
           SK   S      +     DG ++   + +S P    ++   + PD    +  +VI RL+ 
Sbjct: 482 SKEFVSPKDKLGKKYEVSDGTSKL--KLISRPTVDYKD---VLPDFEYAYELMVIARLE- 535

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
                 Y  +Q  +A+++   EK  IP + DY  +  LS+E  +KL  ++P  + QAS+I
Sbjct: 536 -----GYIRKQNNDAQKMIRLEKLKIPANIDYKKVNNLSSESVDKLMKIRPNTIGQASRI 590

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA + +LL Y+K
Sbjct: 591 SGVNPADIQMLLFYLK 606


>gi|304372809|ref|YP_003856018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis HUB-1]
 gi|304309000|gb|ADM21480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis HUB-1]
          Length = 619

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/616 (41%), Positives = 366/616 (59%), Gaps = 24/616 (3%)

Query: 6   YDVIVIGGGHAGCEAA-AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++ IV+GGGHAG EA  A++       AL+T     + SM CNP+IGG  KG + REIDA
Sbjct: 8   FNAIVVGGGHAGIEAIYALSKAENLKVALVTLNKHKLASMPCNPSIGGPAKGIITREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G  +D A IQ + LN  KGPAV+  R Q D+E Y   + ++I  ++N+ +I+  V
Sbjct: 68  LGGVQGYFSDLAMIQVKYLNESKGPAVKAIRAQIDKEKYSKLILKDIKQRKNITLIEDLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   IS I ++   +I+  ++++TTGT+L   I  G+ +  +G   +  SN L +
Sbjct: 128 TKLEVKNKAISGIYLEKLGLIKTKSLIITTGTYLDSKILRGEEQYKSGPDNERTSNLLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + + E++      I FS  T +   +QI C +T 
Sbjct: 188 NLKELGFELQRLKTGTPPRIYSDSIDFSQVEREVLPLVNISFSSKTKQNIKKQISCFLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH+II EN+  S++YSG I   GPRYCPSIEDKIVRF  +  HQIF EPE    D+
Sbjct: 248 TNEETHKIINENLNRSSMYSGAINGVGPRYCPSIEDKIVRFSTKERHQIFFEPETKRQDI 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++P ++Q + IRTIPGL+   + + GYAIEYD +NP EL  +LE+KK+  LF
Sbjct: 308 MYINGMSTSMPVDVQDKLIRTIPGLKNARVAKWGYAIEYDALNPLELKRSLESKKVKNLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGLVAGIN+  K  K   I   R D YIGV+IDDL +KG  EPY
Sbjct: 368 FAGQMNGTSGYEEAAAQGLVAGINAKEKLLKRRPIEILRNDGYIGVLIDDLVTKGTKEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+     K G I     K + K I++Y  +  ++  L   
Sbjct: 428 RMLTSRAEYRLILRNDNADIRMAKYAKKTGMIS---LKEYEKIIEKYRKIDKMIDKL--- 481

Query: 485 SKNLSSTSISFKQ-----DGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQI 538
           SK   S      +     DG ++   + +S P    ++   + PD    +  +VI RL+ 
Sbjct: 482 SKEFVSPKDKLGKKYEVSDGTSKL--KLISRPTVDYKD---VLPDFEYAYELMVIARLE- 535

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
                 Y  +Q  +A+++   EK  IP + DY  +  LS+E  +KL  ++P  + QAS+I
Sbjct: 536 -----GYIRKQNNDAQKMIRLEKLKIPANIDYKKVNNLSSESVDKLMKIRPNTIGQASRI 590

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA + +LL Y+K
Sbjct: 591 SGVNPADIQMLLFYLK 606


>gi|291520338|emb|CBK75559.1| glucose-inhibited division protein A [Butyrivibrio fibrisolvens
           16/4]
          Length = 565

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/564 (42%), Positives = 333/564 (59%), Gaps = 11/564 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+VIG GHAGCEAA  +A++G +T   T    ++  M CNP IGG  KGHLVRE
Sbjct: 4   VEETYDVVVIGAGHAGCEAALASARMGLNTICFTISMDSVAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y   M++ +   ENL + Q
Sbjct: 64  LDALGGQMGINIDHTFIQSKMLNSSKGPAVHSLRAQADKAAYSQRMRKTMQDTENLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N +  +     +   C   ++ TGT+LR     G +    G  G   +N 
Sbjct: 124 AEVTELIIENNKVCGVKTLSGATYHCKAAIICTGTYLRARCLYGDVIEHNGPNGLKAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S +  + D  R KTGTPAR+D  +I + K E Q  D  ++PFSF T +  +   Q+ 
Sbjct: 184 LTDSLLANNVDMNRFKTGTPARIDSNSIDYSKMEIQLGDNPVVPFSFSTKREDVQIEQVP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 244 CYLTYTNEKTHEIIRANLDRSPMYSGVIEGTGPRYCPSIEDKVVRFSDKNRHQLFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT+ +Y  G+S+++PE++Q+   RT+PGLE   I+R  YAIEYD IN  +L  +LE K 
Sbjct: 304 LNTNEMYIGGMSSSMPEDVQYAMYRTVPGLENCKIVRNAYAIEYDCINATQLKASLEFKD 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NG++GYEEAAAQGLVAGIN+A K  + + +   R++SYIGV+IDDL +K 
Sbjct: 364 INGLFAAGQFNGSSGYEEAAAQGLVAGINAALKVLEKNPMILDRSNSYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G + + R     +  ++     + +K
Sbjct: 424 TKEPYRMMTSRAEYRLLLRQDNADLRLSKIGYEVGLLSKERYDHVVEKERQIEEEVARVK 483

Query: 480 SLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            + + ++        S  SI      K     + +  P+     L  I PD  + S  V 
Sbjct: 484 EINIGARKEVQALLESYGSIPLSNGIKL---VDLIRRPELDYDKLAPIDPDRPELSEEVR 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIK 557
           E + I   Y  Y  RQ  + K+ K
Sbjct: 541 EEVNIYIKYEGYLTRQEKQVKQFK 564


>gi|150020716|ref|YP_001306070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho melanesiensis BI429]
 gi|166224335|sp|A6LL84|MNMG_THEM4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149793237|gb|ABR30685.1| glucose inhibited division protein A [Thermosipho melanesiensis
           BI429]
          Length = 624

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/619 (42%), Positives = 364/619 (58%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAG EAA   A+LG  T ++T     +G   CNPAIGG  KG +VREID L
Sbjct: 12  FDVIVVGTGHAGIEAALAPARLGLRTLILTTNLDNVGWAPCNPAIGGPAKGIVVREIDVL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D   I  R+LN  KGPAVR  R Q D+  Y   M+ ++ SQENL +  G V 
Sbjct: 72  GGEMAKTTDETMINVRMLNTGKGPAVRALRAQIDKYAYSQMMKNKLQSQENLVLRFGLVE 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  +V       R   V+LTTGTFLRG I IG+  + AGRMGD P+  L  S
Sbjct: 132 KILVKDGKVYGVVDSFGIDYRAKAVILTTGTFLRGKIFIGRDTMEAGRMGDLPAKGLSKS 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECGITR 244
            M   F   R KTGTP+R+   +I + K  +Q  D+    FS F   K+  +   C +T 
Sbjct: 192 LMDIGFKLSRFKTGTPSRVLKSSINFSKMIRQDTDDEPRAFSHFSEPKVLPKDHPCWLTH 251

Query: 245 TNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TN +TH+II + + +S +Y     I+S GPRYCPSIEDK+V+F  R+ HQ+F+EPEG N+
Sbjct: 252 TNEKTHKIIRDYLVYSPLYGKVKLIQSVGPRYCPSIEDKVVKFN-RDSHQVFVEPEGKNS 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG+ST+LP   Q + +RTIPGLE V I+RP YAIEYDYI+P +L+ TLE+K I G
Sbjct: 311 QEYYLNGLSTSLPYAAQIKMLRTIPGLENVVIVRPAYAIEYDYIDPLQLYQTLESKLIEG 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGLVAGIN+A K      +   R++SYIG++IDDLT+KGV E
Sbjct: 371 LYFAGQINGTSGYEEAAGQGLVAGINAAMKILGEKPLILKRSESYIGILIDDLTTKGVDE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL- 481
           PYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +        LK++ 
Sbjct: 431 PYRLLTSRAEYRLLLRHDNAHIRLAKYGYRVGLIPKWFYEKVLNLEKNIKLQIERLKNVK 490

Query: 482 VLTSKNLSST-----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           V  S  ++       S   K+  K    Y  L  P+ S  ++  +  + R     ++E++
Sbjct: 491 VPVSDRVNDILVKLGSTPLKEGTKL---YNLLKRPEISYNDIEELDSE-RITDKELLEQI 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  + + E K  +  E   I K  +   +P LS E +EKL  + P ++ QA 
Sbjct: 547 EIYIKYEGYIEKMLEEVKIFEEYESVDISK-INLDKVPNLSTEAREKLKKVMPRSIGQAM 605

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPA +  ++ YI+K
Sbjct: 606 RIPGVTPADIANIISYIEK 624


>gi|193216990|ref|YP_002000232.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma arthritidis 158L3-1]
 gi|254811515|sp|B3PNC6|MNMG_MYCA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193002313|gb|ACF07528.1| glucose-inhibited division protein A [Mycoplasma arthritidis
           158L3-1]
          Length = 607

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/614 (40%), Positives = 364/614 (59%), Gaps = 14/614 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YD IVIGGGHAG EAA   AK   + ALIT   + +  + CNP+IGG  KG + RE
Sbjct: 1   MNKTYDAIVIGGGHAGIEAAYALAKRAFNVALITLNINRLAMLPCNPSIGGSAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN  KGPAV   R Q D+E Y   +  +I  Q N+ +I+
Sbjct: 61  IDALGGMQGYFADLAMIQIKMLNTSKGPAVWSLRAQIDKEKYCQIILDDIKKQSNITLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV      +N    +V ++N  I    VV+TTG ++   I  G      G  G+  S+S
Sbjct: 121 DEVVDLIVNENQCHGVVTKENGNISAKVVVMTTGVYMNSRILRGTDIKYDGPDGEKTSSS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  + MK+ F+  RLKTGTP R+   +I + K EK+  D+  + FS  ++   + Q  C 
Sbjct: 181 LSKNLMKYGFEILRLKTGTPCRIYTDSIDFSKVEKEQLDKNELSFSSHSNVKLDEQTCCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T  II+ N+  S++YSG I   GPRYCPS+EDKIVRF E+  H IF EPE   
Sbjct: 241 LTHTTAKTKEIILNNLDKSSLYSGIIIGIGPRYCPSVEDKIVRFQEKETHHIFFEPETAK 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D++Y NG+ST++PE +Q Q I +IPGLEK  + + GYAIEYD INP  L+ +LE+K +S
Sbjct: 301 GDIMYINGLSTSMPESVQDQMIASIPGLEKARVQKYGYAIEYDAINPLNLYKSLESKTLS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQ NGT+GYEEAAAQGL+AGIN+A K +K+  +   R+ +YIGV+IDD+ +KG  
Sbjct: 361 NFFSAGQPNGTSGYEEAAAQGLIAGINAANKLDKMPMMEIKRSSAYIGVLIDDIVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DN D RL+    +   I  +    + K + +Y  + + ++  
Sbjct: 421 EPYRMLTSRAEYRLLLRNDNVDERLSQYAFENKMISAQ---SYNKVLDKYKLINNEIQK- 476

Query: 482 VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            L  + +SS S   K+   T   +  + L+ P    +++         F  L  + + I+
Sbjct: 477 -LKDEYVSSNSELAKKYNVTSGVSKLKLLANPAVDPKDIL-----GNDFPYL--DEITIQ 528

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
                Y  +Q   A+++   EK  +P D DY+ +  L+ E ++KL+ +KP  + QAS+I 
Sbjct: 529 VRLFGYLKKQESAAEKMFRLEKLKLPIDLDYNLVENLATEARQKLNQIKPTTIGQASRIS 588

Query: 600 GMTPAALNLLLIYI 613
           G+ PA + +L+ Y+
Sbjct: 589 GINPADIQMLMYYL 602


>gi|198274089|ref|ZP_03206621.1| hypothetical protein BACPLE_00226 [Bacteroides plebeius DSM 17135]
 gi|198273167|gb|EDY97436.1| hypothetical protein BACPLE_00226 [Bacteroides plebeius DSM 17135]
          Length = 623

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/622 (42%), Positives = 364/622 (58%), Gaps = 15/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDKTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAW-REILENLPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +V           VVLT GTFL G++HIG   +  GR  +  S  L  
Sbjct: 124 EELLVENGEVTGVVTCWGVTFHAKCVVLTAGTFLNGLMHIGHKMLAGGRCAEPASYHLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR+KTGTP R+DGK++ +D  + Q  +     FSF+++    +Q++C    
Sbjct: 184 SITRHGITAGRMKTGTPVRIDGKSVHFDLMDTQDGENDFHRFSFISEPRHLKQLQCWTCF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H  + + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 244 TNEEVHDTLRKGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ + ++ IP  + + + RPGYAIEYDY +P +L  TLE+K +  LF
Sbjct: 304 LYLNGFSSSLPMDIQLEALKKIPCFKDLVVYRPGYAIEYDYFDPTQLKHTLESKVVKNLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGIIAGINAHLNCHGGEPFVLGRDEAYIGVLIDDLVTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    +LG +   R +   K   E + + + + +  + 
Sbjct: 424 RMFTSRAEYRILLRQDDADMRLTERAYQLGLVKADRYEILQKKRAEIDRIVNFVSTFSVK 483

Query: 485 SKNLSSTSISFKQDGKTRTA--YEFLSYPDFSIQNLFSICP---------DARKFSSLVI 533
           +  ++           T      + +S P  +I+N+    P         + RK    VI
Sbjct: 484 ADKINDALEKLGTAPLTHGCKLVDLISRPQITIENIAPYIPAFQAALDKIEERK--EEVI 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I   Y  Y  R+   A +I   E   I   FDY++L +LS E ++KL  + P  L 
Sbjct: 542 EAAEIRIKYKGYIDRERTIADKIHRLESIRIKGKFDYANLQSLSTEARQKLVKIDPETLA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+LL+ + +
Sbjct: 602 QASRIPGVSPSDINVLLVLLGR 623


>gi|189460231|ref|ZP_03009016.1| hypothetical protein BACCOP_00868 [Bacteroides coprocola DSM 17136]
 gi|189433092|gb|EDV02077.1| hypothetical protein BACCOP_00868 [Bacteroides coprocola DSM 17136]
          Length = 623

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 362/626 (57%), Gaps = 23/626 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VREIDAL
Sbjct: 5   YDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVREIDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEV 124
            G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A  REIL    NL + Q  V
Sbjct: 65  GGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAW-REILENIPNLHIWQDTV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +V           ++LT GTFL G++HIG   +  GR  +  S  L  
Sbjct: 124 EELLVENGEVTGLVTCWGVTFHAKCIILTAGTFLNGLMHIGHKMLAGGRCAEPASYHLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR+KTGTP R+D +++ +   E Q  +     FSF+++    +Q++C    
Sbjct: 184 SITRHGITAGRMKTGTPVRIDARSVDFSLMETQDGENDFHRFSFISEPRQLKQLQCWTCY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T  
Sbjct: 244 TNEEVHEVLRSGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGETTQE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP +IQ   ++ IP    +   RPGYAIEYDY +P +L  TLE+K +  LF
Sbjct: 304 LYLNGFSSSLPMDIQFAALKKIPCFRNIVAYRPGYAIEYDYFDPTQLKHTLESKVVKNLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFVLGRDEAYIGVLIDDLVTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    KLG   + R  R  +  +E   L    K+  + 
Sbjct: 424 RMFTSRAEYRILLRQDDADMRLTERSYKLGLASKERYDRLCQKREEIQRLVEFAKTYSIK 483

Query: 485 SKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDARKFSSLV------- 532
           +  ++    + +  G  R  +     E LS P  +I+N   I P    F + +       
Sbjct: 484 ADKIND---ALEGLGTARLTHGCKLIELLSRPQITIEN---IAPHVPSFQAALDKVTDRK 537

Query: 533 ---IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              IE  ++   Y  Y  R+ + A +I   E   I   FDY++L +LS E ++KL  + P
Sbjct: 538 EETIEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYANLNSLSTEARQKLIKIDP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             L QAS+I G++P+ +N+LL+ + +
Sbjct: 598 ETLAQASRIPGISPSDINVLLVLLGR 623


>gi|262166773|ref|ZP_06034510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus VM223]
 gi|262026489|gb|EEY45157.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus VM223]
          Length = 566

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/562 (43%), Positives = 334/562 (59%), Gaps = 15/562 (2%)

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + Q  V
Sbjct: 1   MGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLFQQAV 60

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +V Q         VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 61  DDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSIALAH 120

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI C IT
Sbjct: 121 RLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIPCYIT 180

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T 
Sbjct: 181 HTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTT 240

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 241 ELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKFIHGL 300

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EP
Sbjct: 301 FFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEP 360

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+   +
Sbjct: 361 YRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQETWM 420

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
              +        L  T +S +  G+     + L  P+ + + L ++         S   E
Sbjct: 421 NPNSVGVEQLNALLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFTPALEDSEAAE 475

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  
Sbjct: 476 QVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGI 535

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK+
Sbjct: 536 ASRISGITPAAISILLVHLKKH 557


>gi|269791623|ref|YP_003316527.1| glucose inhibited division protein A [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099258|gb|ACZ18245.1| glucose inhibited division protein A [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 622

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/611 (39%), Positives = 351/611 (57%), Gaps = 21/611 (3%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA  +A++G  T L+         M+CNP+IGG  KGHL RE+DA+ G   + AD
Sbjct: 17  HAGCEAALASARMGVRTLLLNMNLENTALMACNPSIGGPAKGHLTREVDAMGGFQAKAAD 76

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
            + +  R LN  KGPAVR  R Q D   +  A + ++ SQ NL V+Q E      E   I
Sbjct: 77  RSALHVRWLNTSKGPAVRTLRIQCDMWEFHRAYRLQVESQPNLHVLQAEAVDLWVEDRRI 136

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
             +      ++ C  V+L+ GT+    ++IG  +  AG MG+  S  L  S M      G
Sbjct: 137 RGVRTSLGQVVECLAVILSPGTYSGARVYIGLDRFQAGPMGNLGSYRLAESLMSLGLKLG 196

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           RLKTGTP RL   +I WD    Q  +E     S  ++        CG TRTNLETHRII+
Sbjct: 197 RLKTGTPPRLHRDSIDWDSIPHQEGEEEPCAMSVFSEPRVVSGFFCGCTRTNLETHRIII 256

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           E +  S +Y+G I+  GPRYCPSIEDK+VRF  R+ H +FLEP G +++ VY    ST+L
Sbjct: 257 EALDRSPLYTGLIEGVGPRYCPSIEDKVVRFPHRDSHPVFLEPVGKDSNEVYVQNFSTSL 316

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P ++Q + +RT+PG E   I++PGYAIEY Y +P++L P LE K ++GLF+AGQ+NGT+G
Sbjct: 317 PYDVQVRMVRTLPGCEGARILKPGYAIEYWYSDPRQLEPWLEVKGLAGLFMAGQVNGTSG 376

Query: 375 YEEAAAQGLVAGINSARKSNKL-DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           YEEAA+QGLVAG+N A ++  + +     R ++Y+GV+IDDL +KG  EPYRM TSR E+
Sbjct: 377 YEEAASQGLVAGVNGALRAMGVNEPFVLGRHEAYVGVLIDDLVTKGTDEPYRMLTSRCEH 436

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS-------K 486
           R+ LR DNAD RL+    +LG + +         +++   LR  L+  VL         +
Sbjct: 437 RLRLRHDNADRRLSFRARELGLLDDLSWGVVMSRMEDQRKLREALEGAVLKPDFVNPRLR 496

Query: 487 NLSSTSISFKQDGKTRTAYEFLSYPDF---SIQNLFSICPDARKFSSLVIERLQIESSYA 543
            L S+ +      +   A E L  P+    ++++L  I   +  + S     +++E  Y 
Sbjct: 497 ELGSSPVE-----EPVRALELLRRPEVTWETLRDLTRIGGPSESWRS-----VEVEEKYR 546

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  R+    + +   ++  IP+ FD+ S+  L  E  EKL+ ++P  L QAS+I G+TP
Sbjct: 547 GYVAREDRRVERMSRMDQVRIPEGFDFGSVRGLLRESLEKLNRVRPRTLGQASRISGVTP 606

Query: 604 AALNLLLIYIK 614
           A + L+ ++++
Sbjct: 607 ADVELIWMHLE 617


>gi|218134367|ref|ZP_03463171.1| hypothetical protein BACPEC_02261 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989752|gb|EEC55763.1| hypothetical protein BACPEC_02261 [Bacteroides pectinophilus ATCC
           43243]
          Length = 587

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/578 (42%), Positives = 347/578 (60%), Gaps = 11/578 (1%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           M CNP IGG  KGHLVREIDAL G MG+  DA  IQ ++LN  KGPAV   R QAD++ Y
Sbjct: 1   MPCNPNIGGSSKGHLVREIDALGGEMGKNIDATFIQSKMLNASKGPAVHSLRAQADKQDY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
              M+  + + E+L + Q EV+        +  +     ++     V+L TGT+L+    
Sbjct: 61  SRRMRMVMENTEHLHIRQAEVSELIVNDGRVQGVKTYSGAVYHAKAVILCTGTYLKARCI 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
            G +    G  G   +N L  S +       R KTGTPAR+D ++I + K  +Q  D+++
Sbjct: 121 YGDVSNYTGPNGLQAANHLTESLIANGISVRRFKTGTPARVDKRSIDFSKMAEQKGDDKI 180

Query: 224 IPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           +PFSF T  D I   Q+ C +T TN +TH II  N+  S +YSG I   GPRYCPSIEDK
Sbjct: 181 VPFSFTTNPDDIQKEQVSCWLTYTNEKTHEIIRANLDRSPLYSGVIHGTGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +VRF ++  HQ+F+EPEG  T+ +Y  G+S++LPE++Q++  RT+PGLE V I+R  YAI
Sbjct: 241 VVRFADKERHQVFIEPEGNYTNEMYLGGMSSSLPEDVQYEMYRTVPGLENVRIVRNAYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYD I+P +L  +LE K I GLF  GQ NG++GYEEAA+QG++AGIN+A K      +  
Sbjct: 301 EYDCIDPVQLKLSLEFKNIEGLFAGGQFNGSSGYEEAASQGIIAGINAAMKVLGKSPLIL 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R++SYIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I E+R 
Sbjct: 361 KRSESYIGVLIDDLVTKENTEPYRMMTSRAEYRLLLRQDNADLRLTHYGYEIGLIDEKRM 420

Query: 462 KRFAKYIQEY--NFLRSLLKSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSI 515
             + KY ++     +  L  + V TS+N    L   + +   +G T    + +  P+ S 
Sbjct: 421 N-YVKYKEKAINEEIERLNNTFVGTSQNVQELLERRNSTLLTNGVTLA--DLVRRPELSY 477

Query: 516 QNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
            ++  I  D  + S  + E++ I   YA Y  RQ  + +  K  E + IP D DY ++  
Sbjct: 478 DDIEPIDKDRPELSEDIREQVNINIKYAGYIERQRRQVEHFKKLENKKIPSDIDYKAISG 537

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           L +E  +KL   +P N+ QA +I G++PA +++LL+Y+
Sbjct: 538 LRSEAVQKLDKFRPLNVGQAQRISGVSPADISVLLVYM 575


>gi|332827805|gb|EGK00540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Dysgonomonas gadei ATCC BAA-286]
          Length = 624

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/627 (41%), Positives = 368/627 (58%), Gaps = 16/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFKYDVIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  + L  +  I + +NL V Q
Sbjct: 61  IDALGGQMGIVTDTTAIQFRMLNKSKGPAMWSPRAQSDRAQFILKWRGIIENTDNLFVWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + +           +VVLT GTFL G++HIGK ++  GR+ +  S  
Sbjct: 121 DTVTSLIIENKTATGVKTAMGVNFSAKSVVLTNGTFLNGLMHIGKTQLGGGRVSEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           +     +F F T R+KTGTPAR+DG+++ +   E+Q  D+    FS++     T +Q+ C
Sbjct: 181 ITEQLREFGFTTDRMKTGTPARIDGRSVDFSLMEEQKGDDDFHKFSYLDFAPRTLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN E H  + + +  S +Y+G IKS GPRYCPSIE K+V F E+  HQ+FLEPEG 
Sbjct: 241 WITYTNEEVHSTLRDRLDDSPLYNGQIKSIGPRYCPSIETKVVTFAEKTSHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T   Y NG S++LP   Q + ++ IP    ++I RPGYAIEYD+ +P +L  TLETK I
Sbjct: 301 STQEYYLNGFSSSLPLHTQIEALQRIPAFRNIHIYRPGYAIEYDFFDPTQLKHTLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGL+AGIN+  K+   D     R ++YIGV+IDDL +KGV
Sbjct: 361 DNLFFAGQINGTTGYEEAGGQGLIAGINAHIKTQGGDEFILKRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT  G  +G     R     +  +E N +     +
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADARLTEKGYNMGLAKRERIDLLNQKKEEMNRIIDFTAN 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDAR-------KF 528
             L  + ++      ++ G +   +     + ++ P  SI ++  + P  +         
Sbjct: 481 YSLKPEYINE---GLEKLGTSPLKHGLKLKDIITRPQVSIDSIAELVPAFKAELDKIPNR 537

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              + E  +I   Y  Y  R+ + A +I   E   I   F+Y ++ +LS E ++KL+ + 
Sbjct: 538 KEEIKEACEIIIKYDGYIKREQLIADKISRLENIQIKGKFNYEAILSLSTEARQKLAKID 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QAS+I G++P  +++LL+ + +
Sbjct: 598 PETIAQASRIPGVSPNDISILLVILGR 624


>gi|303280251|ref|XP_003059418.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459254|gb|EEH56550.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 663

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 293/653 (44%), Positives = 390/653 (59%), Gaps = 59/653 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV+VIGGGHAG EAAA AA+ GAS ALIT   + TIG MSCNP+IGGL KG LVREIDA
Sbjct: 1   YDVVVIGGGHAGTEAAAAAARRGASVALITPSPAKTIGEMSCNPSIGGLAKGTLVREIDA 60

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG  ADAAGIQFRVLN  KGPAVRGPR Q DR  Y+  +Q  + +   + ++   V
Sbjct: 61  LDGLMGVAADAAGIQFRVLNASKGPAVRGPRAQMDRTAYKNEIQSLLGNVGGVTIVDAAV 120

Query: 125 AGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM----- 174
           A   T       +++       ++ IR + VV+ TGTFL+GV+H+G   IPAGR+     
Sbjct: 121 ADLITPAPRALGVILDRGGGGASTRIRSAAVVVATGTFLKGVLHVGSETIPAGRLPTAVT 180

Query: 175 ------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   + +N L +      F  GR+KTGTP RLDG +I W   E+Q  DE   PF+F
Sbjct: 181 EGPDKSASAGANLLADRLYGMGFKMGRMKTGTPPRLDGASIDWGGLEEQPGDEPPRPFAF 240

Query: 229 MTDKI--------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
               +        T RQ+ C  TRT  +T   +    +             PRYCPS+E 
Sbjct: 241 HNGSLASVVPWRPTLRQVSCYATRTTADTEAFVASKPRSKREAGAPGVGAAPRYCPSLES 300

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           K  RF  R  H ++LEPEGL+TDVVYPNG+S +L    Q + +RTIPGLE V ++RPGY 
Sbjct: 301 KFTRFPNRT-HLVWLEPEGLDTDVVYPNGLSNSLEPSDQVEMLRTIPGLENVKMLRPGYG 359

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCI 399
           +EYDY++P+EL  TLET+++SGLFLAGQINGTTGYEEAAAQGL+AG N+A  + + L  I
Sbjct: 360 VEYDYVDPRELRATLETRRVSGLFLAGQINGTTGYEEAAAQGLLAGANAAGAAREDLGAI 419

Query: 400 ---CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
                SR  SY+GV++DDLT +G  EPYRMF+SR E+R+S+RPDNAD RLT  G++ G +
Sbjct: 420 PNEITSRGGSYLGVLVDDLTRRGTSEPYRMFSSRVEHRLSIRPDNADLRLTSAGVRCGLV 479

Query: 457 GERRQKRFA----------KYIQEYNFLRSLLKSLVLTSK-----NLSSTSISFKQDGKT 501
           GE R +  A          + +Q      +L +S+ L ++     N S  S+       T
Sbjct: 480 GEARGRAAATRAALVTDALEALQSAKMSPTLWRSMGLRAEASEVCNASDASV-------T 532

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
              +  LS    ++Q + S  P A       +E    E  YA Y  +Q  + +++K EE 
Sbjct: 533 DATFTALSDASATLQRVLSNDPSA-------LESAATECYYAPYLAKQRRDVEDLKSEEA 585

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             IP + DY+S+ +LS E  EKL+  KP N+  A++I G+TPAAL  L+ + +
Sbjct: 586 TTIPAELDYASIGSLSAEDVEKLNEAKPANIAAAARISGVTPAALVSLIRHAR 638


>gi|330040419|ref|XP_003239903.1| glucose inhibited division protein A [Cryptomonas paramecium]
 gi|327206829|gb|AEA39005.1| glucose inhibited division protein A [Cryptomonas paramecium]
          Length = 647

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/619 (40%), Positives = 359/619 (57%), Gaps = 11/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVI+IGGGHAGCEAA      G ST L T     I    CNP+IGG  K  LV EID
Sbjct: 31  QEYDVIIIGGGHAGCEAALSCCSQGVSTLLFTLNLDKIAWQPCNPSIGGPAKSILVHEID 90

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG++ D + I  ++LN  KGPAV   R Q D+  Y   M++ +    NL + +  
Sbjct: 91  ALGGWMGKITDRSYIHKKILNTSKGPAVWSLRAQTDKREYSEEMKKVLNETSNLTISEEM 150

Query: 124 VAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V+    T++  I  +      +  C ++V+TTGTF++G I +G  K  AGR+G+  S +L
Sbjct: 151 VSDIILTKEEKIKGVKTFFGGLFECKSIVITTGTFMKGTIWVGSKKFAAGRIGEMASFAL 210

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECG 241
            +S  K  FD  RLKTGTP R+D + I +   EKQ +D     FSF   +  +R  + C 
Sbjct: 211 SDSLKKLKFDINRLKTGTPPRIDSRYINFKVMEKQNSDIMENWFSFDKSEWNSRHTLSCY 270

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I+ T LET  +I  N+  S  Y G ++S GPRYCPSIEDK+VRF ++  HQ+FLEPEG N
Sbjct: 271 ISHTTLETLSVIRSNLHLSPKYGGFMRSTGPRYCPSIEDKVVRFDQKKEHQVFLEPEGKN 330

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+ST LPE +Q   I+TIPGLE   IIRP Y+++YDYI   +L  TL +  IS
Sbjct: 331 TNEIYIQGMSTGLPENLQKNIIKTIPGLEYSKIIRPAYSVDYDYIPATQLDKTLMS-DIS 389

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQI GTTGYEEAAAQG VAG+N+A  S +   +   R  S+IG+++DDL +K + 
Sbjct: 390 GLFFAGQICGTTGYEEAAAQGWVAGLNAALYSLQNSLLSLRRESSFIGLLVDDLCTKKLK 449

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-S 480
           EPYR+ TS++E+R+ LR DNAD RLTP+G K G + ER+ K F    +  N  + +++  
Sbjct: 450 EPYRVLTSKSEHRLLLRGDNADFRLTPLGKKYGTVSERKWKSFEHKYE--NIQKEIIRVD 507

Query: 481 LVLTSKNLSSTSISFKQDGKTRTA-----YEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             L  KNL       ++   T  A        L  P  S + L +        ++   ++
Sbjct: 508 NALIEKNLQQRLTFVEKQTTTSCAKNCCVLNLLDQPFSSYKTLENFRLHNFNLNASEKKQ 567

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+IE  Y+ Y  RQ  +   ++      I K+ ++  +  +S E +EKL+  +P  L +A
Sbjct: 568 LEIEIKYSVYIERQETQINALEEALDTKIQKNLNFMKIFQISKEAREKLAKKRPSTLREA 627

Query: 596 SKIEGMTPAALNLLLIYIK 614
            ++ G++   +  LL+Y+K
Sbjct: 628 CQLGGVSLPDIQTLLVYVK 646


>gi|255074421|ref|XP_002500885.1| predicted protein [Micromonas sp. RCC299]
 gi|226516148|gb|ACO62143.1| predicted protein [Micromonas sp. RCC299]
          Length = 761

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/621 (41%), Positives = 361/621 (58%), Gaps = 16/621 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GHAGCEAA  A++ GA T L+T     I    CNPA+GG  K  LV E+DAL
Sbjct: 102 FDVIVVGAGHAGCEAALAASRRGARTLLLTLSLDRIAWQPCNPAVGGPAKSQLVHEVDAL 161

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-- 123
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  +  Q NL + +G   
Sbjct: 162 GGEIGKMADKCYLQKRVLNASRGPAVWALRAQTDKWEYSREMRLRLERQPNLMIREGMAT 221

Query: 124 --VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             + G N E   + +    +    R   VVLTTGTF+ G I +G+  + AGR G++PS  
Sbjct: 222 DVLVGSNDEVAGVRTFFGME---FRAPAVVLTTGTFMSGQIWVGRKTLAAGRAGEAPSEG 278

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIEC 240
           L  S     F+T RLKTGTPAR+D ++I +   E Q  DE    FSF     +   Q+ C
Sbjct: 279 LTESLCDLGFETDRLKTGTPARVDSRSIDYSLLEAQPGDEDERWFSFDPRAHVAREQMAC 338

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT   TH++I +N+  +  Y G + + GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 339 HLTRTTAATHQLIRDNLHETPTYGGWVGAKGPRYCPSIEDKIVRFADKESHQIFLEPEGR 398

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VY  G ST LPE +Q   +RT+PGLEKVN++RP YA+EYD++   +   TLETKKI
Sbjct: 399 SCPEVYVQGFSTGLPERLQLALLRTLPGLEKVNMLRPAYAVEYDFLPAYQCDNTLETKKI 458

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQGL+AG N+A  +     +   R  SY+G +IDDL +K +
Sbjct: 459 RGLFFSGQINGTTGYEEAAAQGLLAGANAAAVALDGAKLVLPREGSYLGTLIDDLCTKDL 518

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTPIG + G I + R   F   +         LK+
Sbjct: 519 REPYRMLTSRSEYRLVLRSDNADQRLTPIGRECGLIDDERWGMFTDKMHAVEDELERLKN 578

Query: 481 LVLTSKNLSSTSI-------SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + S +    +I       + K   ++ T  E L  P+     +          +    
Sbjct: 579 TRVKSDSEVVQAILNAGAGGAKKPSRQSFTLEELLRRPEVDTA-MLDGFGLGGGLTRWDA 637

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++++  Y  +  RQ  +  ++  +  + IP+  DY ++  L  E +EKL+ + P  + 
Sbjct: 638 EAVEVKVKYEGFIKRQEGQVAKVAGKMNKKIPEGIDYGAITTLRMEAREKLAKMTPRTVG 697

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+TPA ++ LL++++
Sbjct: 698 QASRIGGVTPADISSLLVHLE 718


>gi|217077029|ref|YP_002334745.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho africanus TCF52B]
 gi|217036882|gb|ACJ75404.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho africanus TCF52B]
          Length = 624

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 375/623 (60%), Gaps = 17/623 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++++DVIV+G GHAG EAA   A+LG  T L+T     +G   CNPAIGG  KG +VREI
Sbjct: 9   DKNFDVIVVGAGHAGIEAALSTARLGLRTLLLTTNLDNVGWAPCNPAIGGPAKGIVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LN  KGPAVR  R Q D+  Y   M+ ++ +QENL +  G
Sbjct: 69  DALGGEMAKTTDETMINVRMLNTGKGPAVRALRAQIDKFEYSKLMKNKLQTQENLILRYG 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +V           V+LTTGTFLRG I IG+  + AGRMGD P+  L
Sbjct: 129 VVEKVLVESGKVKGVVDSFGIDYYAKAVILTTGTFLRGKIFIGRDTMEAGRMGDLPAKGL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             S ++  F   R KTGTPAR+   +I + K  +Q  D+    FS+ ++ K+  +   C 
Sbjct: 189 SKSLLELGFKLSRFKTGTPARVLKSSIDFSKMIRQDTDDEPRAFSYFSEPKVLPKDHPCW 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +T TN +TH+II + + +S +Y GD+K   S GPRYCPSIEDK+V+F  R+ HQ+F+EPE
Sbjct: 249 LTHTNQQTHKIIRDYLVYSPLY-GDVKLIQSVGPRYCPSIEDKVVKFN-RDSHQVFVEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N+   Y NG+ST+LP   Q + +RT+PGLE V I+RP YAIEYDYI+P +LF TLE+K
Sbjct: 307 GRNSQEFYLNGLSTSLPYAAQVKMLRTVPGLENVVIVRPAYAIEYDYIDPTQLFQTLESK 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GL+ AGQINGT+GYEEAA QGL+AGIN+A K    + +   R++SYIG++IDDLT+K
Sbjct: 367 IVEGLYFAGQINGTSGYEEAAGQGLIAGINAAMKILGEEPLILKRSESYIGILIDDLTTK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     ++  +    L
Sbjct: 427 GVDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVINLEKQIQYQIERL 486

Query: 479 KSLVLTSKNLSST------SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           K++ + + ++ +       S   K+  K    Y  L  P+    ++     +  +   L 
Sbjct: 487 KNVKVPASDIVNDRLVELGSTPLKEGTKL---YNLLKRPEIEYGHVKEFDSEPIEDREL- 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++I   Y  Y  + + + K  +  E   I K  ++  +P LS E +EKL  + P ++
Sbjct: 543 LEQIEILIKYEGYIEKMLEDVKVFEEYESVDISK-INFDKVPNLSTEAREKLKKILPRSI 601

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA +I G+TP+ +  ++ YI+K
Sbjct: 602 GQAMRIPGVTPSDIANIISYIEK 624


>gi|260890748|ref|ZP_05902011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia hofstadii F0254]
 gi|260859301|gb|EEX73801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia hofstadii F0254]
          Length = 488

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/484 (46%), Positives = 315/484 (65%), Gaps = 22/484 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDVIV+G GHAG EAA  +A+LG +TA+ T     IG MSCNP++GG  K HL +E+D
Sbjct: 2   RNYDVIVVGAGHAGIEAALASARLGLNTAIFTITLDNIGVMSCNPSVGGPAKSHLAKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG- 122
           AL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y   M++ I +Q+NLD +Q  
Sbjct: 62  ALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIYAREMKKTIENQQNLDTVQDI 121

Query: 123 -------EVAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                  EV  F  +    + +I  I  +         VVL TGTFLRG+++IG  ++  
Sbjct: 122 VTELIVEEVEIFEDDSRRIEKVIKGIRTKTGMEFFAKAVVLATGTFLRGLLYIGDKRVKG 181

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-- 229
           GRMG+  ++ L +S     F   R KTGTP RLD +T+  +K E+Q      IP  F   
Sbjct: 182 GRMGELSADDLTDSLKSLGFKMDRFKTGTPPRLDIRTLNLEKLEEQPGITG-IPLKFSMR 240

Query: 230 ---TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
              ++ +   Q+ C +TRTN  TH+II++N+  + +Y+G I S GPRYCPSIEDK+V+F 
Sbjct: 241 TPNSEVLEKPQLSCYLTRTNETTHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVKFN 300

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +++ H +FLEPEG +T  VY +G+ST+ P  +Q + + TI GLE  +I+R GYA+EYD +
Sbjct: 301 DKDSHHLFLEPEGFDTAEVYISGLSTSYPASLQQKIVNTIDGLENAHIMRYGYAVEYDIV 360

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P EL  TLET+K+ GL+LAGQ+NGT+GYEEAAAQG++AGIN+A K    +     R  S
Sbjct: 361 DPSELDYTLETRKVKGLYLAGQLNGTSGYEEAAAQGIIAGINAALKIRGEEPFILDRESS 420

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIG MIDDL +K + EPYRMFT+R+E+R+ LR DNAD RL+    K+G +     K++  
Sbjct: 421 YIGTMIDDLINKELFEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLL----DKKYYD 476

Query: 467 YIQE 470
            +QE
Sbjct: 477 IVQE 480


>gi|41058591|gb|AAR99282.1| glucose-inhibited division protein A [Candidatus Blochmannia
           floridanus]
          Length = 578

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/567 (43%), Positives = 350/567 (61%), Gaps = 7/567 (1%)

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           GHLV+E+DA+ G+M +  D +GIQFR+LN +KG AV+  R QAD+ LYR A++  +  Q+
Sbjct: 1   GHLVKEVDAMGGIMAKAIDQSGIQFRILNTRKGAAVKSTRAQADKILYRQAIRHALEIQD 60

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +L ++Q  V     ++N +  +V+   ++ I   +VVLTTGTFL G IHIG      GR 
Sbjct: 61  SLFILQASVEDLIIKQNKVIGVVIPKIAIEIYAKSVVLTTGTFLNGKIHIGMNNFKGGRS 120

Query: 175 GD-SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           GD   S+SL        F   RLKTGT  R+  K + +D    Q +D  L  FSF     
Sbjct: 121 GDLESSSSLSQKLRDLSFRINRLKTGTSPRIHAKGVNFDCMSVQNSDSPLPVFSFTGSLE 180

Query: 234 TN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            + +QI C  T TN +TH II  N+  S +YSG I    PRYCPSIEDK+VRF +R+ HQ
Sbjct: 181 QHPKQIPCYSTYTNKKTHDIIRLNLNQSPVYSGLINGISPRYCPSIEDKVVRFSDRDAHQ 240

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEGL T  +Y NG+ST+LP  IQ + I +I GLE  +IIRPGYAIEYD+ +P++L 
Sbjct: 241 VFLEPEGLTTSEIYVNGVSTSLPSNIQTEIIHSIFGLENAHIIRPGYAIEYDFFDPRDLK 300

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLE+K ISGLFL+GQINGTTGYEEAAAQG++AGIN+AR           R  +Y+GV++
Sbjct: 301 LTLESKFISGLFLSGQINGTTGYEEAAAQGILAGINAARYVQNKPGWYPRRDQAYLGVLV 360

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL + G  EPYRMFTSR+EYR+SLR DNAD RLT +  + G I + R + F    +   
Sbjct: 361 DDLCTYGTKEPYRMFTSRSEYRLSLREDNADLRLTTVAREFGLIDDNRWRIFCLKQENIE 420

Query: 473 FLRSLLKSLVL--TSKNLSSTSISFKQDGKTRTAYE-FLSYPDFSIQNLFSICP-DARKF 528
             R  L++  +   S+++   +       K + + E  L  P+ +   L  +    + K 
Sbjct: 421 KERQRLRNTYIFPYSEDIVQLNRFLNSPIKNKVSGEDLLKRPEMNYVKLMQLNTFQSVKL 480

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I+  Y+ Y  RQ  E K+  + E  L+P D +Y  +  LS E+ +K +  +
Sbjct: 481 DYQVFEQVEIQIKYSGYLLRQQEEIKKYLYYENTLLPIDINYHDIAGLSKEVIDKFNDCR 540

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P+++ QAS+I G+TPAA++ +LI++KK
Sbjct: 541 PYSIGQASRIPGVTPAAISNVLIWLKK 567


>gi|293363789|ref|ZP_06610530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma alligatoris A21JP2]
 gi|292552655|gb|EFF41424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma alligatoris A21JP2]
          Length = 612

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/627 (40%), Positives = 364/627 (58%), Gaps = 30/627 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +++ I++GGGHAG EAA   A  G  +AL +     +G M CNP+IGG  KG + REIDA
Sbjct: 6   NFEAIIVGGGHAGIEAAFALAHKGHKSALFSFDLKNLGMMPCNPSIGGPAKGIITREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G  AD A IQ ++LN  KGPAVR  R Q D+E Y   + ++    ENL +++  V
Sbjct: 66  LGGMQGYFADLAMIQIKMLNESKGPAVRAIRAQIDKEKYSQIILKKAKETENLTLVEKSV 125

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               T++N  +  I  +D        VV+TTGT++   I  G     +G  G   +N L 
Sbjct: 126 VEILTDQNNQVIGIKTEDGEEYFAKVVVITTGTYMSSRIIRGSEITYSGPDGQKTTNLLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K  FD  RLKTGTP R+   +I + K EK+  D+  + FS  +      QI C +T
Sbjct: 186 ESLKKIGFDLQRLKTGTPPRVFADSIDFSKVEKEKLDDSALCFSSRSGVKLPNQISCYLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +NI  S +YSG I+  GPRYCPSIEDKI+RF ++  HQIF EPE  +  
Sbjct: 246 YTNEKTHKIIEKNISLSGMYSGLIEGVGPRYCPSIEDKIMRFRDKTRHQIFFEPETNDGK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++Y NG S+++P E+Q + I+TIPGLE   + +  YAIEYD +NP +L PTLETKK+  L
Sbjct: 306 IIYVNGFSSSMPIEVQKEMIKTIPGLENAKVQKWAYAIEYDALNPLDLLPTLETKKVKNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+A      + I   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FSAGQINGTSGYEEAAAQGLIAGINAALYLENKEQIILKRHEAYIGVLIDDLVTKGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DN+D RL+  G  +G I +           +Y+F+      +  
Sbjct: 426 YRMLTSRAEYRLLLRNDNSDLRLSKYGYDIGLIKK----------SDYDFIVDKYNKIEQ 475

Query: 484 TSKNLSSTSISFKQDGKTR-------TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-R 535
             + L++T IS K     +       +  + +S P+    +      D    + LV+  R
Sbjct: 476 KIEELNNTFISSKDPLAIKYGITNGVSLIKVISRPEVDASDFLG---DFEFKNDLVVAVR 532

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L        Y  +Q ++A ++   E   IPKD D++ +P ++ E K+KL  + P  + QA
Sbjct: 533 LD------GYIKKQKMDAAKMLRLENLKIPKDVDFNLIPNIATEAKQKLIKINPLTIGQA 586

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA + ++L Y+  NT K +E
Sbjct: 587 SRISGINPADIQMILFYL--NTRKKSE 611


>gi|28190319|gb|AAO33052.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/535 (45%), Positives = 343/535 (64%), Gaps = 11/535 (2%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D +GIQFR+LN +KGPAVR  R QADR++Y   ++  + +Q+ L +++
Sbjct: 1   IDALGGFMARAIDKSGIQFRILNSRKGPAVRSTRAQADRKIYSKTIKNFLQNQDKLSIVE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   +  +++ +       +VVLT GTFL G I+IG   +  GR+GD  S  
Sbjct: 61  GEVKDLIVENYSVKGVIIHNEIKFFSRSVVLTVGTFLGGKIYIGLDSVSGGRIGDHASID 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +   +  RLKTGTP RLD +TI + + E Q++D  L  FSFM   + + +Q+ C
Sbjct: 121 LASRLRELPVNVSRLKTGTPPRLDYRTINFKELECQYSDNPLPIFSFMGTILEHPKQVPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II +N+  SAIYSG +K  GPRYCPSIEDK++RF +++ HQIFLEPEGL
Sbjct: 181 HITYTNEITHSIIRKNLHSSAIYSGILKGIGPRYCPSIEDKVIRFSKKSQHQIFLEPEGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +YPNGIST+LPE +Q + I++I GLEK  IIRPGYA+EYDY++P+ L  TLE+K I
Sbjct: 241 SGIEIYPNGISTSLPENVQIKIIQSIKGLEKAKIIRPGYAVEYDYLDPRHLKLTLESKFI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL+AG+N++  ++  D     R ++Y+GV+IDDL +KG 
Sbjct: 301 SGLFLAGQINGTTGYEEAAAQGLLAGLNASLHASDNDGWFPKRNEAYLGVLIDDLCNKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRS 476
            EPYRMFT+RAEYR+ LR DNAD RLT IG KLG I E+R KR+ + +     E   L++
Sbjct: 361 KEPYRMFTARAEYRLILREDNADLRLTEIGRKLGLIDEKRWKRYNQKLMNIKNELKRLKN 420

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
           L  S +  + N  +  ++ K + K+ +A + L  P+ +  NL SI    P  +   +   
Sbjct: 421 LTISPISNNINQLNKILNVKLNIKS-SAKDLLKRPEITYDNLMSINGFGPGIQDVEA--T 477

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           ++++I   Y  Y  RQ  E      +E  ++ K  +Y  +  LS+E+  KL+  K
Sbjct: 478 QQIEICEKYQGYISRQKKEIDRNLKKENIMLFKIKNYHEIRGLSHEVISKLNYYK 532


>gi|332886126|gb|EGK06370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Dysgonomonas mossii DSM 22836]
          Length = 624

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/625 (41%), Positives = 369/625 (59%), Gaps = 16/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YD+IV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFKYDIIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  + +  +  I + +NL + Q
Sbjct: 61  IDALGGQMGIVTDKTAIQFRMLNKSKGPAMWSPRAQSDRARFIMKWREIIENTDNLFIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   ++ +            VVLT GTFL G++HIGK ++  GR+ +  S  
Sbjct: 121 DTVTSLIVQDKTVTGVKTAMGVEFSAKAVVLTNGTFLNGLMHIGKTQLGGGRVSEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           +      F F T R+KTGTPAR+DG+++ +   E+Q  D+    FS++  +  T +Q+ C
Sbjct: 181 ITEQLRDFGFTTDRMKTGTPARVDGRSVDFSLMEEQKGDDDFHKFSYLDYEPRTLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH  + + +  S +Y+G IKS GPRYCPSIE KIV F E+  HQ+FLEPEG 
Sbjct: 241 WITYTNDDTHATLRDGLDDSPLYNGQIKSIGPRYCPSIETKIVTFEEKTSHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T   Y NG S++LP   Q + ++ IP    ++I RPGYAIEYD+ +P +L  TLETK +
Sbjct: 301 STQEYYLNGFSSSLPLHTQIEALQKIPAFRNIHIYRPGYAIEYDFFDPTQLKHTLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGL+AGIN+   ++  +     R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQINGTTGYEEAGGQGLIAGINAHINTHGGNEFVLKRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY----NFLRS 476
            EPYRMFTSRAEYRI LR D+AD RLT  G  +G   + R     +  +E     NF+ +
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADVRLTEKGYNIGLAKQERIALLNEKKEEVQKIINFVAN 480

Query: 477 LLKSLVLTSKNLSSTSIS-FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                   ++ LS    +  KQ  K +   + ++ P  +I+++    P  +     +  R
Sbjct: 481 YSLKPEYINEGLSKLGTNPLKQGMKLK---DVITRPQITIKSIAEYIPAFKVELDKIPNR 537

Query: 536 -------LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
                   +I   Y  Y  R+   A +I   E   I   FDY ++ +LS E ++KLS + 
Sbjct: 538 REEIIEAAEIIIKYDGYIKREQTIADKITRLENIRIKDKFDYENISSLSTEARQKLSKIN 597

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P  + QAS+I G++P  +++LL+ +
Sbjct: 598 PETIAQASRIPGVSPNDISILLVLL 622


>gi|219116699|ref|XP_002179144.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409035|gb|EEC48967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 843

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 307/732 (41%), Positives = 404/732 (55%), Gaps = 124/732 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGC+AAA AA+ GA TAL+T K +TIG +SCNP+IGG+GKGHLVREIDAL
Sbjct: 96  YDVIVVGGGHAGCDAAAAAARTGARTALVTQKLATIGELSCNPSIGGIGKGHLVREIDAL 155

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMG VAD  GI FR+LN +KGPAVRGPR Q DR+LY+  MQ  + +  NL +++  V 
Sbjct: 156 DGLMGNVADQGGIHFRLLNRRKGPAVRGPRAQMDRDLYQQCMQDILRNYPNLHLVEASVQ 215

Query: 126 GF----NTEKNIISSIVMQ-------------------DNS--------MIRCST----- 149
                 +T   + S   MQ                   DN         MI+ +T     
Sbjct: 216 DLLLDQSTSAPLESMAPMQSGDLGQGLLGSTGRGSSPVDNGANVDQQARMIQAATSSSRN 275

Query: 150 ----------------------VVLTTGTFLRGVIHIGKLKIPAGR-MGDS-----PSNS 181
                                 VV+TTGTFLRGV+ +G  +   GR + DS     PS  
Sbjct: 276 ARIRGIVAETPDGKTIELASRAVVITTGTFLRGVLMMGHERYSGGRHLRDSEEVEPPSVG 335

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ---- 237
           L  +  +F+F  GRLKTGTPAR+DG TI W     Q ++    PFS +  +    Q    
Sbjct: 336 LAQTLARFEFPLGRLKTGTPARIDGSTIDWSALAIQPSENPAQPFSHLR-QFNEEQPPLV 394

Query: 238 -----IECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGH 291
                I+C  T TN ETH+++ME       Y G D K  GPRYCPSI  K+ RF +R GH
Sbjct: 395 EAGTLIDCYQTATNEETHKLVMEFEHMLPQYDGLDGKGNGPRYCPSIYKKVQRFPQRTGH 454

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
             FLEPEGLNTD+VYPNG+S   P EIQ + +RT+ GL  V IIRPGY +EYD++NP  L
Sbjct: 455 NCFLEPEGLNTDLVYPNGMSGPYPPEIQQKILRTMKGLGAVEIIRPGYDVEYDFVNPTAL 514

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-------ICFSRT 404
             TLETK+I GL+LAGQI GTTGYEEAAAQG+VAG N+ R +                R 
Sbjct: 515 THTLETKRIGGLYLAGQICGTTGYEEAAAQGIVAGANAGRAAAAATRGDPPPLPFVIGRD 574

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
           + YIGV++DDL ++G  EPYRMFTSRAEYRISLR DNAD RLT  GM+ G + +  ++  
Sbjct: 575 EGYIGVLVDDLVTRGTSEPYRMFTSRAEYRISLRADNADLRLTRKGMEYGLVKDE-ERMS 633

Query: 465 AKYIQEY------NFLRSL-LKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFS 514
           A   +E+        L S  LK    +S+   +L   +   ++ G+ +TA E L  P+ +
Sbjct: 634 ALDAREFLIDDRVGKLSSFQLKVTEWSSRGGLDLMGGAQMKRKIGQKKTAEEVLGMPNVT 693

Query: 515 IQNLFSICPDARKFSSLVIE----------RLQIES-------------------SYAAY 545
           ++++  I     K   +V+E          R  +E+                    Y +Y
Sbjct: 694 LKDVEDIMKAVSKEPDVVVETTDPLPSKEVRAMLEAMDNFVPSPASVYDTVEASVKYQSY 753

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDY--SSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  + +  +  +   IP D +Y    LP LS E  EKLS ++P     AS+I GMTP
Sbjct: 754 VRRQHKDMESWRRAQGLRIPPDVEYVHKYLPTLSIEELEKLSQIRPATFADASQISGMTP 813

Query: 604 AALNLLLIYIKK 615
            +L  L  ++++
Sbjct: 814 KSLIYLYHHVQR 825


>gi|159900273|ref|YP_001546520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893312|gb|ABX06392.1| glucose inhibited division protein A [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 650

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/645 (40%), Positives = 364/645 (56%), Gaps = 32/645 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+N +YDV+V+GGGHAGCEAA  AA++G+ T L+T     +  MSCNP+IGG  KG+LVR
Sbjct: 1   MLNLTYDVVVVGGGHAGCEAALAAARMGSQTLLLTIDLDKLAHMSCNPSIGGPAKGNLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQ R+LN  KGPAV+  R Q+D+ LY  AM+  + +Q NL + 
Sbjct: 61  EIDALGGAMGVITDRTLIQIRLLNETKGPAVQALRAQSDKRLYAKAMKEFLEAQPNLALK 120

Query: 121 QGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           Q  V       +       ++  Q     R   +VLTTGTFLRG    G+  IPAGRMG+
Sbjct: 121 QAMVERIIPLADQADGARFAVETQTGWQYRAKALVLTTGTFLRGRAITGESIIPAGRMGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--- 233
            P+ +L +   +  F   RLKTGTP R+D +TI +   E Q      + F F  D     
Sbjct: 181 QPAINLSSDLSQLGFPLVRLKTGTPPRIDARTIDFSGLEIQPGSSTPLYFGFNYDGQRPE 240

Query: 234 ------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C    T  E H+ I +N+  + ++SG I+  GPRYC
Sbjct: 241 SLVHGPPNPIYPEPMLDGWQPQLPCYHIYTTPEFHQHIRDNLHRAPMFSGVIEGVGPRYC 300

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIVRF ++  H  FLEPEG  T  +Y  G +T+LPE++Q   +R+IP L KV I+
Sbjct: 301 PSIEDKIVRFADKESHGFFLEPEGWETLEIYVQGCNTSLPEDVQWAMLRSIPALRKVEIM 360

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R GYAIEYD +   E+  +LE K++  LF AGQINGTTGYEEA AQGL+AGIN+A K  +
Sbjct: 361 RVGYAIEYDAVATGEITASLEAKRLPNLFFAGQINGTTGYEEAGAQGLMAGINAALKVAE 420

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
                  R  +YIGVMIDDL +K + EPYRMFTSRAE+R+ LR DNAD RLTP+  +LG 
Sbjct: 421 RAPFILRRDQAYIGVMIDDLVTKEIREPYRMFTSRAEHRLLLRGDNADLRLTPLAAELGL 480

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG-----KTRTAYEFLSY 510
           +   R  +  +     +     L+ L  T    + T+   +  G     +  +  + L  
Sbjct: 481 VSAERAAQVERKQWAIDQASQQLRGLRYTPS--AETNGRLQAAGIEPLLQPASGEDILRR 538

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
                  L  + PD     + V E++++ + YA Y  ++    + ++  E R +P D D 
Sbjct: 539 VGVKYAQLAEVQPDLPVVEADVAEQVELSAKYAVYIAKEQASVERVRKMEDRRLPADLDI 598

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P+L  E ++ L   +P  L QAS++ G+ PA +  LLI++++
Sbjct: 599 EAIPSLRIEARQVLKRFRPATLGQASRLAGINPADIAHLLIHLER 643


>gi|294155785|ref|YP_003560169.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma crocodyli MP145]
 gi|291599896|gb|ADE19392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma crocodyli MP145]
          Length = 612

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/623 (40%), Positives = 363/623 (58%), Gaps = 29/623 (4%)

Query: 1   MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           MIN+   YD IVIGGGHAG EA    A     TAL +   + + +M CNP+IGG  KG +
Sbjct: 1   MINKENEYDAIVIGGGHAGIEATFALANKDKKTALFSFNLNKLATMPCNPSIGGPAKGVI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            REIDAL G  G  AD A IQ ++LN  KGPAVR  R Q D+E Y   ++  +L+ E +D
Sbjct: 61  TREIDALGGQQGFFADNAMIQIKMLNESKGPAVRAIRAQIDKEKYSKLVKEAVLNHEYID 120

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
             +  V     + N I  I  +D    +   VV+TTGT++   I  G     +G  G+  
Sbjct: 121 AFEAIVTELVVDNNTIIGIKTEDGIFYKSKVVVITTGTYMSSRIIRGSDITYSGPDGEKT 180

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +N L +S     F+  RLKTGTP R+   +I + K EK+  D+  + FS  +     +QI
Sbjct: 181 TNKLSDSLRNIGFNLQRLKTGTPPRIYADSIDFSKVEKEKLDDSFLCFSSRSHIKLPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKI+RF ++  HQIF EPE
Sbjct: 241 SCYLTYTNSKTHELIEQNVHLSGMYSGLIEGIGPRYCPSIEDKIMRFRDKERHQIFFEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+  ++Y NG+ST+LP  IQ + I+TIPGLE   + +  YAIEYD ++P +L  +LETK
Sbjct: 301 TLDGSIIYINGLSTSLPISIQEKLIKTIPGLENAKVQKWAYAIEYDALDPLDLKASLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI+ LF AGQINGT+GYEEAAAQGL+AGIN+A K +  + +   R ++YIGV+IDDL +K
Sbjct: 361 KINNLFSAGQINGTSGYEEAAAQGLLAGINAALKIDCKEPLILKRHEAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DN+D RL+    + G + E           EYNF+++  
Sbjct: 421 GTKEPYRMLTSRAEYRLLLRNDNSDIRLSKYAYEQGLLTE----------TEYNFIKNKY 470

Query: 479 KSLVLTSKNLSSTSISFKQDGKTR-------TAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           + +    + L +  IS K     +       +  + ++ P+    +         +F + 
Sbjct: 471 EKIDKKIEELKNVFISSKDPLALKYGITNGVSMLKVIARPEVDANDFLG----DFEFKNE 526

Query: 532 VIERLQIESSYAAYTGRQMIEA-KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++  ++++     Y  +Q   A K IK E  + IP + DY ++P ++ E K KL  + P 
Sbjct: 527 LVVAIRLD----GYIKKQQQSASKMIKLEALK-IPTNIDYDNVPNIATEAKIKLKKILPL 581

Query: 591 NLLQASKIEGMTPAALNLLLIYI 613
            + QAS+I G+ PA + +L+ Y+
Sbjct: 582 TIGQASRISGINPADIQMLIFYL 604


>gi|310779688|ref|YP_003968021.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
 gi|309749011|gb|ADO83673.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
          Length = 622

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 367/628 (58%), Gaps = 25/628 (3%)

Query: 2   INR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +NR  +DVIV+GGGHAGCEAA  +A+LG  TA+ T     I  MSCNP+IGG GK HLV 
Sbjct: 1   MNRMEFDVIVVGGGHAGCEAALASARLGKKTAMFTMYLDNIAMMSCNPSIGGPGKSHLVA 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G +GR  D   +Q + LN  KGPA R  R QAD+  YR+ M+  I +   L+VI
Sbjct: 61  EIDVLGGEIGRHTDRYNLQLKHLNTSKGPAARITRGQADKYWYRVKMKEIIENTPGLEVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  +    TE   ++ ++       +  +VVL TGTFL+  + IG +  PAGR G+  + 
Sbjct: 121 QETIDEIITEDGHVTGVISSLGIEYKAKSVVLATGTFLKAKVVIGDVVYPAGRQGEGSAE 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S +K   D  R +T TP R+D +T+ + K ++   +E    FS  T K  NR +  
Sbjct: 181 ELSESLLKNGIDLERYQTATPPRIDKRTVDFSKLKEMHGEENPNFFSLFTKKEKNRTVPT 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  +T  +  E +  S I +G IK++GPR+CPS++ K++ F ++  HQIFLE E +
Sbjct: 241 WLTHTTEKTIDVARELLHFSPIVTGVIKTHGPRHCPSLDRKVLNFPDKKDHQIFLEMESM 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +Y NG++TA+P   Q + +RTI GLE   I+R GYA+EYDY    +L+P+LE KK+
Sbjct: 301 ESNELYVNGLTTAMPPFAQEKMMRTIAGLENAEIMRYGYAVEYDYAPAYQLYPSLENKKV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAA QG +AG+N+ARK +K D +   R+++YIGV+IDD+  K  
Sbjct: 361 RNLYFAGQINGTSGYEEAATQGFMAGVNAARKVDKKDPVIIDRSEAYIGVLIDDIIHKKT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+  SRAEYR++LR DNA  RL     ++G I E +            +L + +K+
Sbjct: 421 PEPYRVLPSRAEYRLTLRFDNAFMRLLDKSREIGIISEDK----------IEYLENCIKN 470

Query: 481 LVLTSKNLSSTSISF--------KQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK 527
           + L  + L   S+          K+  K R     T  + L + + S ++L  I  D ++
Sbjct: 471 IDLEVQRLKQESVPLSKANELLEKKGEKQRVVKGVTVSDILKFKNVSYEDLAYIT-DIQE 529

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           F   V  +++    Y  +  R+  + ++ K  E   IP+DFD+S +  +SN  +  +  +
Sbjct: 530 FPDFVKNQIETIIKYEVFIDRERSQIEKFKKLESLKIPEDFDFSEIKGVSNIARHGMEEV 589

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P ++ +A++I G+T   + LL+ +I++
Sbjct: 590 QPISIGEATRISGVTGHDIALLIAHIER 617


>gi|332850744|ref|ZP_08432991.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013150]
 gi|332730581|gb|EGJ61897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013150]
          Length = 549

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/537 (43%), Positives = 327/537 (60%), Gaps = 6/537 (1%)

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q        E + +  +V Q     
Sbjct: 10  RKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDLIVEGDTVKGVVTQMGIRF 69

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              TVVLTTGTFL GVIH+G  K   GR GD PS +L     +     GRLKTGTP R+D
Sbjct: 70  DAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLRELKLPVGRLKTGTPPRID 129

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
            +++ +     Q  D      SFM D  +   Q+ C IT TN +TH II   +  S +Y+
Sbjct: 130 ARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTNEKTHDIIRGGLDRSPMYT 189

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +YPNGIST+LP ++Q + +R
Sbjct: 190 GVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELYPNGISTSLPFDVQFELVR 249

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ AGQINGTTGYEEA AQGL+
Sbjct: 250 SIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFAGQINGTTGYEEAGAQGLL 309

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AG+N+AR++ + +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD 
Sbjct: 310 AGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRMFTSRAEYRLMLREDNADQ 369

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKT 501
           RLT IG +LG + + R   + + ++      S L+ +     N        ++     K 
Sbjct: 370 RLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVWAAPNNPMGKKFVEMTGADLSKE 429

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            +A + L  P+ +   +  +     + S  V E+++I   Y  Y  RQ  +  ++K  E+
Sbjct: 430 CSAIDLLKRPNINFGQIAELT--GSEVSQQVGEQIEIAVKYEGYINRQHEDVAQLKRLEE 487

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TPAA+ L++I I+KN +
Sbjct: 488 TKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTPAAVQLVMITIRKNNM 544


>gi|291320104|ref|YP_003515362.1| glucose inhibited division protein A [Mycoplasma agalactiae]
 gi|290752433|emb|CBH40404.1| Glucose inhibited division protein A [Mycoplasma agalactiae]
          Length = 613

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/621 (40%), Positives = 358/621 (57%), Gaps = 26/621 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G +T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGHNTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NL++++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSQLAYEYVLKQPNLELLE 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       ++N     +++++  +I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEVIVDENGYFKGVLVENIGLIEAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKMPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETHRII ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHRIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + Y NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITYVNGLSTSMPIDVQELMIKSIPGLRNAKVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 HNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKDPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKY------IQEYNF 473
            EPYRM TSRAEYR+ LR DNAD+RL+    K G I  E  QK   KY      IQ  N 
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYKSGMISKEEYQKVLDKYKLIDDEIQRLNT 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
                KS V    N+++ S          T    +S PD    ++    P   + +++V 
Sbjct: 481 TYLSGKSDVALKYNITNGS----------TLLNVISRPDVDPSDIIPNFPYLEEITTMV- 529

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            RL        Y  +Q  +A +    E   IP+D +Y  +  ++ E ++K   ++P  + 
Sbjct: 530 -RLH------GYIEKQKSDANKAVRLENLKIPEDLNYFDVKNIAIEARQKFEKIRPATIG 582

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+ PA + +L+ +++
Sbjct: 583 QASRISGINPADIQMLMFHLE 603


>gi|15639038|ref|NP_218484.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025278|ref|YP_001933050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum SS14]
 gi|6016130|sp|O83084|MNMG_TREPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238689312|sp|B2S1Z2|MNMG_TREPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3322299|gb|AAC65038.1| glucose inhibited division protein A (gidA) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189017853|gb|ACD70471.1| glucose inhibited division protein A [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059460|gb|ADD72195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 630

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/628 (41%), Positives = 376/628 (59%), Gaps = 23/628 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA++G  T LIT    +IG +SCNP+IGG+ KG++VREIDAL
Sbjct: 8   YDVIVVGGGHAGAEAALAAARMGEHTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ+R+LN  +GPAV+ PR QAD+ LY   ++  +   ++L + Q  V 
Sbjct: 68  GGEMGKFADACMIQYRLLNKSRGPAVQAPRIQADKFLYAQKVKYTLECTQHLHLYQDTVV 127

Query: 126 GF----NTEKNIIS-----SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                  T+   ++     ++V      I    VVLTTGTF+ G ++IG+ + P GR+G+
Sbjct: 128 DVVCSNTTDAGYVAYGAAHAVVTARGRRISARAVVLTTGTFMEGRVYIGEYEAPEGRLGE 187

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
             +  L  +  K  F  GRLKTGTPAR+  K++     EKQ AD  + PFSF   +I   
Sbjct: 188 HAAEGLGAALRKKGFQMGRLKTGTPARVLRKSVDLSVMEKQEADAIMRPFSFAHVEINRP 247

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             +C I  TN  TH++I EN   S  +SG IK+ G RYCPSIEDK+ +F +R  HQ+++E
Sbjct: 248 HADCYINYTNERTHQLIRENFHRSPFFSGRIKAVGTRYCPSIEDKVRKFPDRIRHQLYIE 307

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL+T+ +Y NG+S+ LPE+IQ + IRTIPG+E+  I RP YA++Y  + P +L   L+
Sbjct: 308 PEGLDTEELYINGLSSCLPEDIQDEMIRTIPGMERAVITRPAYAVDYAVLFPVQLGIDLQ 367

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA------RKSNKLDCICFSRTDSYIGV 410
           TK++SGLF AGQINGT+GYEEA  QG++AGIN+A      +   +       R ++YIGV
Sbjct: 368 TKRVSGLFSAGQINGTSGYEEAGGQGIIAGINAALYARSTKTKEEYHPFVLKRDEAYIGV 427

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL ++G+ EPYRMFT+RAEYR+ LR D AD RLT     +G   +   +   K ++ 
Sbjct: 428 MIDDLVTQGIDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQKKSAVETLQKKMRT 487

Query: 471 YNFLRSLLKS--LVLTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARK 527
            + +  LL++  + LT  N     +  K   GK+  A   L  P   +  + S+     +
Sbjct: 488 KHEILHLLQTNKVSLTHAN---AYVQLKPHIGKSFAA--TLRDPVIPLGLIASLNEQIAQ 542

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           F   V + + +E  Y  Y   Q     +++  E   IP  FDY+ +  LS E + +L  +
Sbjct: 543 FPLEVFQSVGVEIRYEHYIAAQDQRIAQVEKMEGIKIPAHFDYARISGLSVESRTRLEHV 602

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  + Q  ++ G+ P+ + LLL ++K+
Sbjct: 603 RPDTIGQVGRMRGIRPSDVMLLLAHLKR 630


>gi|319776804|ref|YP_004136455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Mycoplasma fermentans M64]
 gi|318037879|gb|ADV34078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mycoplasma fermentans M64]
          Length = 617

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 354/620 (57%), Gaps = 14/620 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 9   HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 69  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E    N++K     I + +  ++     V+TTGT++   I  G +   +G   +  +  
Sbjct: 129 AEEILVNSKKEF-KGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPK 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C 
Sbjct: 188 LSASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  +
Sbjct: 248 LTYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETAD 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I 
Sbjct: 308 GSITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIK 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  
Sbjct: 368 NFYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTK 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RL   G K+G I +    ++ K I++Y  +   ++ L
Sbjct: 428 EPYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKH---QYQKVIKKYELIDQEIQRL 484

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T   LSS      + G T T    L        + + I PD   F  L  E L     
Sbjct: 485 HTTY--LSSKDPVAIKYGIT-TGISLLQTLARPAVDPYDIIPD---FPYL--EELTTMVR 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
              Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I G+
Sbjct: 537 LHGYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRISGI 596

Query: 602 TPAALNLLLIYIKKNTVKLN 621
            PA + +L+ Y++    K N
Sbjct: 597 NPADIQMLMFYLETTRKKNN 616


>gi|160902994|ref|YP_001568575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Petrotoga mobilis SJ95]
 gi|189039348|sp|A9BGL2|MNMG_PETMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160360638|gb|ABX32252.1| glucose inhibited division protein A [Petrotoga mobilis SJ95]
          Length = 625

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/617 (41%), Positives = 359/617 (58%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+G GHAG EAA  +AK+G +T ++     T+G   CNPAIGG  KG + REIDA
Sbjct: 7   SFDVIVVGAGHAGIEAALASAKMGMNTLILNINLDTLGWAPCNPAIGGPAKGVVAREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+  +V D   I  R+LN  KG AVR  R Q D+  Y   M+  + + +NL +  G  
Sbjct: 67  LGGVQAKVTDETMINIRMLNTSKGIAVRALRAQIDKYDYSQRMKEILETTDNLILRHGIA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  +  +         V+LTTGTFLRG I +G+    AGRMG+ P+NSL  
Sbjct: 127 KNILVENGKIIGLETELGMKYFAKVVILTTGTFLRGKIFVGRNTFEAGRMGELPANSLTY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           S +K   +  R KTGTPAR+   +I + K + Q   +  + FS+ +  ++  +   C + 
Sbjct: 187 SLIKEGLEVSRFKTGTPARVRKDSIDFSKFDIQETADEPLAFSYWSQPRVLTKDYPCYLG 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIK---SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           RTN +TH +I + I  S +Y GD+K   S GPRYCPSIEDK+++F  ++ HQ FLEPE  
Sbjct: 247 RTNSKTHEVIRKYIAFSPLY-GDVKLIQSIGPRYCPSIEDKVMKFN-KDTHQFFLEPESK 304

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +Y NG+ST+LP E Q + ++TIPGLE   I RP YA+EYD++NP +L   LETKKI
Sbjct: 305 HSKEIYLNGLSTSLPFEAQIEILKTIPGLENAIIERPAYAVEYDFVNPIQLKHNLETKKI 364

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAA QGL+AGIN+A K    +     R+++Y+GV+IDDL +KGV
Sbjct: 365 EGLFLAGQINGTSGYEEAAGQGLLAGINAALKIRGEEPFVLDRSEAYLGVLIDDLITKGV 424

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNA  RL   G K G + + + ++  +     N     L  
Sbjct: 425 DEPYRLLTSRAEYRLLLRHDNAHLRLYKYGYKYGLLSKEQYEQLHRLENLINHQIERLDQ 484

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           + ++   ++    S      T+  +  E L   + S  +L  +  +A +    VIE++ I
Sbjct: 485 IKVSPNQVNDILASKGSSKITQPVHMSELLKRSEISYTDLKHLDEEAVE-EKEVIEQIDI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  R   E  ++K  EK  IP D +Y  +  ++ E KEKL  +KP    Q  +I
Sbjct: 544 HFKYNGYFQRMQDEIAKMKELEKEKIPSDIEYDKINNIAYEAKEKLKKIKPETFGQLLRI 603

Query: 599 EGMTPAALNLLLIYIKK 615
            G+ PA    L IY+K+
Sbjct: 604 PGINPADAINLRIYLKQ 620


>gi|238809619|dbj|BAH69409.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 620

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/620 (41%), Positives = 354/620 (57%), Gaps = 14/620 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 12  HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 71

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 72  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 131

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E    N++K     I + +  ++     V+TTGT++   I  G +   +G   +  +  
Sbjct: 132 AEEILVNSKKEF-KGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPK 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C 
Sbjct: 191 LSASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACY 250

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  +
Sbjct: 251 LTYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETAD 310

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I 
Sbjct: 311 GSITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIK 370

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  
Sbjct: 371 NFYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTK 430

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RL   G K+G I +    ++ K I++Y  +   ++ L
Sbjct: 431 EPYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKH---QYQKVIKKYELIDQEIQRL 487

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T   LSS      + G T T    L        + + I PD   F  L  E L     
Sbjct: 488 HTTY--LSSKDPVAIKYGIT-TGISLLQTLARPAVDPYDIIPD---FPYL--EELTTMVR 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
              Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I G+
Sbjct: 540 LHGYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRISGI 599

Query: 602 TPAALNLLLIYIKKNTVKLN 621
            PA + +L+ Y++    K N
Sbjct: 600 NPADIQMLMFYLETTRKKNN 619


>gi|154494270|ref|ZP_02033590.1| hypothetical protein PARMER_03621 [Parabacteroides merdae ATCC
           43184]
 gi|154085954|gb|EDN84999.1| hypothetical protein PARMER_03621 [Parabacteroides merdae ATCC
           43184]
          Length = 625

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 259/626 (41%), Positives = 366/626 (58%), Gaps = 19/626 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGE 123
           L G MG V D   IQFR+LN  KGPA+  PR+Q+DR  + +   R IL    NL + Q  
Sbjct: 64  LGGYMGIVTDRTAIQFRMLNQSKGPAMWSPRSQSDRARF-IECWRGILENLPNLYIWQDT 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +  +           +VVLT GTFL G++HIG+ +I  GR+ +  +  L 
Sbjct: 123 VRELLLDGNTVCGVKTYMGVEFHAKSVVLTNGTFLNGLMHIGRTQIRGGRIAEPAATGLT 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
              +     + R+KTGTP R+D +++ +D+  +Q  +     FS+M T     +Q+ C  
Sbjct: 183 EQLVSLGIKSERMKTGTPVRIDARSVHFDEMAEQPGENDFHKFSYMDTSHRVLKQLSCWT 242

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN   H ++ E +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  T
Sbjct: 243 TFTNEACHAVLREGLPDSPLYNGQIQSIGPRYCPSIETKIVTFADKPQHQLFLEPEGETT 302

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP +IQ + ++ IP    + I RPGYAIEYD+ +P +L   LETK I  
Sbjct: 303 QEYYLNGFSSSLPLDIQLRALQQIPAFRDIQIYRPGYAIEYDFFDPTQLHHNLETKLIRN 362

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA  QGLVAGIN+    +  D     R ++YIGV+IDDL +KGV E
Sbjct: 363 LFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGDPFVLGRDEAYIGVLIDDLVTKGVDE 422

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYRI LR D+AD RLT     LG   + R     +     + + S  ++  
Sbjct: 423 PYRMFTSRAEYRILLRQDDADMRLTEKSYHLGLAKQDRYDLLKEKKASRDAIISFAENYS 482

Query: 483 LTSKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDAR--------KFS 529
           +  + ++S     +  G T  A+     E +  P  +++N+  + P  R           
Sbjct: 483 IKPQYINS---GLEALGTTPLAHGCKLIELIPRPQITLENIAELVPAFRTELDKVPVSRK 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+++ +LS E ++KL+ + P
Sbjct: 540 EEIIEAAEILIKYSGYIRREQIIADKINRLENIHIKGKFDYNAIQSLSTEARQKLTRIDP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QAS+I G++P+ +N+LL+ + +
Sbjct: 600 DTIAQASRIPGISPSDINILLVMLGR 625


>gi|308189647|ref|YP_003922578.1| glucose inhibited division protein A [Mycoplasma fermentans JER]
 gi|307624389|gb|ADN68694.1| glucose inhibited division protein A [Mycoplasma fermentans JER]
          Length = 617

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/622 (41%), Positives = 358/622 (57%), Gaps = 18/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 9   HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 69  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E    N++K     I + +  ++     V+TTGT++   I  G +   +G   +  +  
Sbjct: 129 AEEILVNSKKEF-KGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPK 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C 
Sbjct: 188 LSASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  +
Sbjct: 248 LTYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETAD 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I 
Sbjct: 308 GSITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIK 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  
Sbjct: 368 NFYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTK 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RL   G K+G I +    ++ K I++Y  +   ++ L
Sbjct: 428 EPYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKH---QYQKVIKKYELIDQEIQRL 484

Query: 482 VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             T   LSS      + G T   +  + L+ P     ++    P   + +++V  RL   
Sbjct: 485 HTTY--LSSKDPVAIKYGITTGISLLQTLARPAVDPYDIIHDFPYLEELTTMV--RLH-- 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
                Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I 
Sbjct: 539 ----GYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRIS 594

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G+ PA + +L+ Y++    K N
Sbjct: 595 GINPADIQMLMFYLETTRKKNN 616


>gi|218283640|ref|ZP_03489602.1| hypothetical protein EUBIFOR_02194 [Eubacterium biforme DSM 3989]
 gi|218215700|gb|EEC89238.1| hypothetical protein EUBIFOR_02194 [Eubacterium biforme DSM 3989]
          Length = 618

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 354/618 (57%), Gaps = 9/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA   ++++   TA++T     IGSM CNP++GG  KG +VREID
Sbjct: 3   KMYDVIVIGAGHAGIEACLASSRMNKKTAIVTLSKDMIGSMPCNPSVGGPAKGIVVREID 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M   AD   +QF++LN  KGP V   R Q+D+  Y+  M+  +  Q++LD+I+  
Sbjct: 63  ALGGMMPIAADKTALQFKMLNTTKGPGVWSLRVQSDKIAYKRFMKEALEKQDHLDIIEAA 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 +      + ++D + I   TVVLT GT++   +  G     +G       N+L 
Sbjct: 123 CKSVVIKDGKAIGVELEDGTFIESKTVVLTAGTYMTSNVLRGHTSTVSGPEEQRTVNTLS 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            S       T RLKTGTPAR+   TI + K E Q    + + FS  T+        +Q  
Sbjct: 183 KSLRDAGIRTFRLKTGTPARVKMDTIDFSKAEPQPGTNQFLRFSETTNPEDVLPFEKQEI 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  T  +TH II  ++  SA+YSG +K  GPRYCPSIEDK+VRF ++  HQ+FLEPE 
Sbjct: 243 CHLIYTQPKTHEIIHTHLHDSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQLFLEPES 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
              D +Y  G ST++P ++Q + + ++PGLE   I +  YAIEYD I+P ++ P +E+K 
Sbjct: 303 KELDTIYIQGFSTSMPIDVQEEMVHSLPGLEHCVIEKYAYAIEYDAIDPLQMKPNMESKI 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ+NGT+GYEEAA QGL+AG N+A K +  +     R ++YIGVM+DDL +KG
Sbjct: 363 VENLFTAGQVNGTSGYEEAAGQGLMAGANAALKVDGKEPFVLRRDEAYIGVMLDDLCTKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RL   G ++G + + R   F   ++     R  L 
Sbjct: 423 TKEPYRLLTSRAEYRLLLRHDNADQRLLEKGYEIGLVSQERYDAFKNKMEAIEVAREELS 482

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +       S+ F+      +A + +  P  +++ L         +   + E++
Sbjct: 483 NAHIKPNSDVDEYLKSLGFEPLAHGCSALDLIKRPKITVKGLAKYT--GLDYEDQINEQI 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ YA Y  +   +AK ++  EK  +  D DY ++  LS E ++KL+ ++P  L QAS
Sbjct: 541 EIQTKYAGYIAKAKRDAKHLQQMEKMKLAHDLDYENMDNLSLEARQKLTEIRPLTLGQAS 600

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ P+ + +L + +K
Sbjct: 601 RISGINPSDIAILAMRVK 618


>gi|148377441|ref|YP_001256317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma agalactiae PG2]
 gi|205831536|sp|A5IXW3|MNMG_MYCAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148291487|emb|CAL58872.1| Glucose inhibited division protein A [Mycoplasma agalactiae PG2]
          Length = 613

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/626 (40%), Positives = 358/626 (57%), Gaps = 26/626 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G +T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGRNTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NL++++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSQLAYEYVLKQPNLELLE 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       ++N     +++++  +I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEVIVDENGYFKGVLVENIGLIEAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKKPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETHRII ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHRIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + + NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITHVNGLSTSMPIDVQELMIKSIPGLRNAKVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 HNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKDPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKY------IQEYNF 473
            EPYRM TSRAEYR+ LR DNAD+RL+      G I  E  QK   KY      IQ  N 
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYNSGMISKEEYQKVLDKYKLIDDEIQRLNT 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
                KS V    N+++ S          T    +S PD    ++    P   + +++V 
Sbjct: 481 TYLSGKSDVALKYNITNGS----------TLLNVISRPDVDPSDIIPNFPYLEEITTMV- 529

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            RL        Y  +Q  +A +    E   IP+D +Y  +  ++ E ++K   ++P  + 
Sbjct: 530 -RLH------GYIEKQKSDANKAVRLENLKIPEDLNYLDVKNIAIEARQKFEKIRPATIG 582

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+ PA + +L+ +++    K
Sbjct: 583 QASRISGINPADIQMLMFHLESRNKK 608


>gi|313678731|ref|YP_004056471.1| glucose-inhibited division protein A [Mycoplasma bovis PG45]
 gi|312950831|gb|ADR25426.1| glucose-inhibited division protein A [Mycoplasma bovis PG45]
          Length = 613

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/622 (40%), Positives = 359/622 (57%), Gaps = 28/622 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G  T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGHKTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NLD+++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSELAYEYVLKQPNLDLLE 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       + N     +++++   I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEILVDDNGYFKGVLVENIGKIDAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKMPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETH+II ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHKIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + Y NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITYVNGLSTSMPIDVQELMIKSIPGLRNARVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    + I   R   YIGV+IDDL +KG 
Sbjct: 361 PNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKEPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD+RL+    K G I       + K I +Y  +   +  
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYKSGMIS---NDEYQKVIDKYKLIDDEI-- 475

Query: 481 LVLTSKNLSSTSISFKQDGKTR-------TAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
                + L+ST +S K D   +       T    +S PD    ++    P   + +++V 
Sbjct: 476 -----QRLNSTHLSGKSDVALKYNITNGSTLLNVISRPDVDPNDIIPDFPYIEEITTMV- 529

Query: 534 ERLQIESSYAAYTGRQMIEA-KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            RL        Y  +Q  +A K ++ E  R IP+D +Y  +  ++ E ++K   ++P  +
Sbjct: 530 -RLY------GYIEKQKSDANKAVRLENLR-IPEDLNYFEVKNIAIEARQKFEKIRPATI 581

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
            QAS+I G+ PA + +L+ +++
Sbjct: 582 GQASRISGINPADIQMLMFHLE 603


>gi|327490313|gb|EGF22100.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1058]
          Length = 495

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/462 (47%), Positives = 296/462 (64%), Gaps = 2/462 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE+DA
Sbjct: 32  SYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVREVDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q  +
Sbjct: 92  LGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQTMI 151

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    +       V++TTGT LRG I IG LK  +G      +  L +
Sbjct: 152 NEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIPLAD 211

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           +     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ C +
Sbjct: 212 NLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVPCWL 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 272 TYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRDT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKKISG
Sbjct: 332 EEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKKISG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG +E
Sbjct: 392 LFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKGTVE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF
Sbjct: 452 PYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARF 493


>gi|205375717|sp|B1ZWP4|MNMG_OPITP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 634

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/628 (39%), Positives = 349/628 (55%), Gaps = 39/628 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV G GHAG EA+  AA++GA T L+T    T+G MSCNPAIGG  KG +VREIDAL
Sbjct: 8   FDVIVCGAGHAGIEASLAAARVGAFTLLLTGNLDTVGQMSCNPAIGGQAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAV+ PR Q D++ Y+  ++  +  Q +L + Q  V 
Sbjct: 68  GGEMAINTDVTGIQFRLLNHTKGPAVQSPRAQCDKKAYQFRLKHTLELQPHLQLFQATVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   +   +       +      TVV+TTGTFLRG++HIG  K   GR+GD  + +L  S
Sbjct: 128 GLIFDGAKVIGCRTNLDIEFYGRTVVVTTGTFLRGLMHIGSNKNEGGRLGDFSARTLSGS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN---------- 235
             +   +  R KTGTP RL G+++ + K E+Q  D     F+F   +             
Sbjct: 188 LQEAGIELRRFKTGTPPRLLGRSLDFSKMEEQKGDANPTFFAFHDTREDGGVFHVEHGKP 247

Query: 236 ---------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                     Q+ C +T T   T  ++ EN+  SA+Y G+I+  GPRYCPSIEDK VRF 
Sbjct: 248 QGEAIPPGCEQVSCWMTYTTARTAELVRENLSRSAMYGGEIEGVGPRYCPSIEDKFVRFA 307

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ++  H +FLEPEG  TD  Y NG+ST+LP ++Q + + +IPGL +  ++RP YA+EYDY 
Sbjct: 308 DKPRHLLFLEPEGRGTDEFYVNGLSTSLPFDVQLELVHSIPGLGEAVLLRPAYAVEYDYA 367

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P +L  +LE++++ GLFLAGQINGT+GYEEAA QGL+AG+N+ARK      +   R ++
Sbjct: 368 PPTQLKMSLESQRVEGLFLAGQINGTSGYEEAAGQGLIAGVNAARKGRGEQPLVLGRHEA 427

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL +KG  EPYRMFTSRAE+R+ L   +A+ RL         +   R    A+
Sbjct: 428 YIGVLIDDLVTKGTEEPYRMFTSRAEHRLLLNHGSAELRLLHHASGCKLLNVNRLDNIAR 487

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
             +        L+S   +   L+   I  +Q+ +     E +                  
Sbjct: 488 KKEAIESWVRRLESERTSEGTLA--EIIRRQNARAELPSELM------------------ 527

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           + S  V + +     Y+ Y  R+     ++   E   IP   DY  +P L  E   KL+ 
Sbjct: 528 RQSKPVRDEVLYRVLYSGYWEREQRHIDKLAQIEAVRIPAAIDYLRIPGLRRESALKLAA 587

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +P  L QAS+I G+ PA +++L++ IK
Sbjct: 588 QRPDTLGQASRISGVNPADVSILMVLIK 615


>gi|104295013|gb|ABF72028.1| glucose-inhibited division A family protein [Musa acuminata]
          Length = 638

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/566 (44%), Positives = 341/566 (60%), Gaps = 14/566 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  AA+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 76  IEEQYDVIVVGGGHAGCEAALAAARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 135

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y L M++ + S  NL + +
Sbjct: 136 VDALGGEIGKIADRCYLQKRVLNRSKGPAVRALRAQTDKREYALEMKKVVESTTNLFIRE 195

Query: 122 GEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      KN     V     M     +VVLTTGTF+ G I +G+  +PAGR G+S S+
Sbjct: 196 AMVTNILVGKNDTVEGVSTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASH 255

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S  +  F+T RLKTGTPAR+D +++ +   E Q  DE +  FSF  D  +   Q+ 
Sbjct: 256 GLTESLQQLGFETDRLKTGTPARVDYRSVNFSGLEPQHGDEEVNWFSFDPDYHVEREQMC 315

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 316 CYLTRTTKDTHQLIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKDSHQIFLEPEG 375

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 376 RTVPDLYVQGFSTGLPERLQLTLLRTLPGLENCLMLRPAYAVEYDYLPAHQCSRSLMTKK 435

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF +GQINGTTGYEEAAAQGL++GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 436 LEGLFFSGQINGTTGYEEAAAQGLISGINAARHSDGKSIIILERESSYIGTLIDDLVTKD 495

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLR 475
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I ERR    Q + A+ ++E   L+
Sbjct: 496 LREPYRMLTSRSEHRLLLRADNADSRLTPLGWDIGLIDERRWNLYQLKQARILEEKERLK 555

Query: 476 SLLKS---LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           S+  S    V    +LS   +       + +    L  P    + L          S + 
Sbjct: 556 SVRISGGDFVAEVSHLSGQPVK-----DSSSLESILKKPHVEYKVLDKHGYGNELLSRIE 610

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKF 558
            E ++I+  YA +  RQ  + +++ F
Sbjct: 611 KECVEIDIKYAGFIARQRSQLQQVNF 636


>gi|323455702|gb|EGB11570.1| hypothetical protein AURANDRAFT_58702 [Aureococcus anophagefferens]
          Length = 663

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 275/660 (41%), Positives = 380/660 (57%), Gaps = 47/660 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA AA+ GA TAL+T +  T+G MSCNP+IGG+GKGHLVRE+DAL
Sbjct: 5   YDVVVIGGGHAGCEAAAAAARGGARTALVTQRVDTVGEMSCNPSIGGIGKGHLVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS--QENLDVIQG- 122
            G+MGR  DAAGI FR+LN +KGPAV GPR QADR+LYR  M+ EI S   ENLDV++  
Sbjct: 65  GGVMGRAIDAAGIHFRMLNRRKGPAVWGPRAQADRDLYRAFMRGEIASGAYENLDVLEAS 124

Query: 123 ------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM-- 174
                 E  G       ++  + ++   +  S  V+TTGTFLRG I +G+   PAGR   
Sbjct: 125 AEDVLFEDRGGERRVRAVAVTIDEEPVEVATSACVITTGTFLRGTIWLGQESRPAGRFVR 184

Query: 175 --GDSPSNSLFNSFMKFDFD--TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
             G   S  L    ++ D     GRLKTGTP RLDG+TI W K   Q +++    FS+  
Sbjct: 185 DDGTGGSGDLSGDTLELDLGLPLGRLKTGTPPRLDGRTIDWSKCVAQPSEDPPFAFSYGN 244

Query: 231 DKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            + + R  + C  T TN  TH I+       A  S  +   GPRYCPS+  K+ RFG+R+
Sbjct: 245 AEASPRGTVACARTATNERTHDIVRAEAHTLAPPS--VSGTGPRYCPSLYKKVERFGDRS 302

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H ++LEPEGLNTD+VYPNG+S A P ++Q + +R+I GLE   I++PGY +EYD+++P+
Sbjct: 303 SHVVWLEPEGLNTDLVYPNGLSGAFPLDVQERIVRSIAGLENAVIVQPGYDVEYDFVDPR 362

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEE-------AAAQGLVAGINSARKSNKLDCICFS 402
            L   L  KK  GLFLAGQI GTTGYEE       A A   +A  +    ++        
Sbjct: 363 SLDHGLGVKKARGLFLAGQICGTTGYEEAAALGLVAGANAALAAGDRDAAASARRRFVVG 422

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK---------- 452
           R + YIGV++DDL ++G +EPYRMFTSRAEYR++LR DNAD RLT +G            
Sbjct: 423 RDEGYIGVLVDDLVTRGTMEPYRMFTSRAEYRLALRADNADLRLTRLGAARVPGLVEPDR 482

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
              C  E R +  A      + LR   ++      +   T+         ++A + L+ P
Sbjct: 483 LAAC--EARARHVADAKARCDALRFAPEAWAPAFLSADETNRDDHSKRSHKSASQLLAMP 540

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIES-----SYAAYTGRQMIEAKEIKFEEKRLIPK 566
             +++ + ++   A +   L+IE    ++      YAAY  R   +    K  +   IP 
Sbjct: 541 HATLEGVLALA--AAQGEELLIEADARDTVAALCKYAAYLDRMDRDVAAYKRNDATKIPP 598

Query: 567 DFDYSS--LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           D DYS+  LPALS E +EKL   +P    +A++I G+TPA+L  L  ++   + + + + 
Sbjct: 599 DLDYSAANLPALSAEEREKLGAARPHTFAEAARISGVTPASLVYLYNHVANGSKRPSAVA 658


>gi|28190321|gb|AAO33053.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/533 (45%), Positives = 335/533 (62%), Gaps = 7/533 (1%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M + +D +GIQFR+LN +KGPAVR  R Q DR++Y   ++  I SQ+ + +++
Sbjct: 1   IDALGGVMAKASDKSGIQFRILNSRKGPAVRSTRAQVDRKIYSQNIKDIIKSQKKIFLLE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +      I+M D +     TV+LTTGTFL G I+IG      GR+ D+ S  
Sbjct: 61  GEVKDLIIKNYCSKGIIMCDGTQFLSQTVILTTGTFLGGKIYIGLXSFEGGRIDDNASIH 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L N   +   +  RLKTGTP RLD +TI ++  + Q +D  L  FSF  + + + +QI C
Sbjct: 121 LANRLRELPINVSRLKTGTPPRLDKRTINFELLQSQHSDSPLPVFSFTGNILDHPKQIPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II +N+K SAIYSG +K  GPRYCPSIEDKI+RF ++  HQIFLEP GL
Sbjct: 181 YITHTNSKTHSIIKDNLKFSAIYSGILKGIGPRYCPSIEDKIIRFSDKLSHQIFLEPGGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +YPNG+ST+LPE+IQ + IR+I GLEK  IIRPGYA+EYDY +P+ L  TLE+K I
Sbjct: 241 SGIEIYPNGVSTSLPEKIQKKMIRSIQGLEKAKIIRPGYAVEYDYFDPRHLKLTLESKFI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAA+QGL+AGIN++  +   +     R ++YIGV+IDDL +KG 
Sbjct: 301 SGLFLAGQINGTTGYEEAASQGLLAGINASLCTLNKNEWFPKRNEAYIGVLIDDLCTKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+RAE+R+ LR DNAD RLT  G KLG I E R KRF + ++      + LKS
Sbjct: 361 KEPYRMFTARAEHRLILREDNADLRLTEQGRKLGLIDEGRWKRFNQKLENIESELTRLKS 420

Query: 481 LVLT----SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIER 535
           L +       N   T ++   + K+  A + L  P+ +   L S+         +   ++
Sbjct: 421 LTINPNSKDANTLXTFLNINLNIKS-NAKDLLKRPEITYNYLMSLKQFGPGIQDVEAAQQ 479

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           ++I+  Y  Y  RQ  E  +   +E  L+    +Y  +  LSNE+  KL+  K
Sbjct: 480 IEIQEKYKGYILRQQHEITQNLKKENILLSVINNYQEVKGLSNEVIMKLNYYK 532


>gi|257466622|ref|ZP_05630933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917777|ref|ZP_07914017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691652|gb|EFS28487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 614

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 366/617 (59%), Gaps = 10/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDVIVVGGGHAGCEAALASARLGLKTAMITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MGR  D   +Q + LN  KGPA R  R QAD+ LYR  M+  +   ENL ++Q  
Sbjct: 62  ILGGEMGRHTDQFNLQLKHLNESKGPAARVTRGQADKFLYRTNMRLTLEHTENLSILQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +++ +  +  +     +  +V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEKLLVQEDEVYGVKTRLGIEYKAKSVILCTGTFLKGKVVIGDITYSAGRQGESAAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +      R +T TP R+D K+I + K ++   ++    FS  T+K  N  +   +T
Sbjct: 182 ENLRELGLQVERYQTATPPRIDKKSIDFSKLKELHGEKHPRYFSIFTEKKENTIVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F E+  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPEKTDHQIFLEMESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE+  I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQDEILHTISGLEQAKIMRYGYAVEYDYMPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAGIN+ARK    + I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLVAGINAARKILGKNPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLK 479
           YR+  SR+EYR+ LR DNA  RL     ++G + + +    +K      QE   L+++  
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYEKTKEIGLLTQEKLLLVEKAIQNVKQEVERLKTISI 481

Query: 480 SLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S+   ++ L     S  F +  K     +        ++ L  I PD  +F    IE + 
Sbjct: 482 SMQEANQFLEKKQCSDLFSKGVKIADILKKKEITYLDLKELIEI-PDYPEFVHNQIETIL 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               +     +Q+++ KE+   E +LIPKDFD+SS+  +SN     L  +KP ++ +A +
Sbjct: 541 KYEIFMEREEKQILKFKEL---ENQLIPKDFDFSSVKGISNIALSGLLEVKPLSIGEAGR 597

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+T   L LL+ +++
Sbjct: 598 ISGVTGNDLALLIAHLR 614


>gi|315932332|gb|EFV11275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 516

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/454 (49%), Positives = 294/454 (64%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTILIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+ ++ ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIVRNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFIAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
           MFTSRAE+R+ LR +NA  RL   G  LG + E+
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQ 455


>gi|219685822|ref|ZP_03540631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
 gi|219672655|gb|EED29685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
          Length = 493

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/493 (45%), Positives = 314/493 (63%), Gaps = 6/493 (1%)

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
           +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L  + +   
Sbjct: 2   RNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLDKTLLSLG 61

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETH 250
           F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF    +   Q+ C +T TN  TH
Sbjct: 62  FEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYVTYTNKRTH 121

Query: 251 RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGI 310
            II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+ +Y NG+
Sbjct: 122 EIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTEEMYLNGL 181

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQIN 370
           S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GLF+AGQ N
Sbjct: 182 SSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKGLFVAGQTN 241

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           G++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EPYRMFTSR
Sbjct: 242 GSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEPYRMFTSR 301

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
           AE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L+ K+++ 
Sbjct: 302 AEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRLSLKDVAD 361

Query: 491 TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQM 550
             +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y  Y  RQ 
Sbjct: 362 EQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYEGYINRQK 417

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
              K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+    + +L 
Sbjct: 418 DLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRNTDITVLF 477

Query: 611 IYIK--KNTVKLN 621
           IY    KN V LN
Sbjct: 478 IYFSNPKNKVVLN 490


>gi|156088059|ref|XP_001611436.1| glucose inhibited division protein A family protein [Babesia bovis]
 gi|154798690|gb|EDO07868.1| glucose inhibited division protein A family protein [Babesia bovis]
          Length = 711

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/679 (39%), Positives = 375/679 (55%), Gaps = 73/679 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGGHAGCEAAA +A++GA T LIT +  TIG MSCNP++GG+GKG++V EIDALD
Sbjct: 33  DVVIIGGGHAGCEAAAASARVGAKTLLITARKETIGEMSCNPSVGGIGKGNIVCEIDALD 92

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MGR AD   + + +LN  +GPAVRGPR Q DR++Y  A++R I +  NL V +G V  
Sbjct: 93  GIMGRAADEGAVMYHLLNSSRGPAVRGPRAQTDRDVYARAVRRLINNYSNLHVEEGMVDD 152

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG------DSPSN 180
              +   +  +++ +   I C +VV+TTGTFLRG  H  K  IP GR        + P+ 
Sbjct: 153 IVVDGGAVRGVILSNGRNINCKSVVVTTGTFLRGRCHRSKNLIPGGRFDRLNQNFELPAE 212

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM----TDKITNR 236
            L ++F +    T R KTGTP RL   TI +D  E Q++DE  IPFS++    ++ + + 
Sbjct: 213 GLCSTFKRLGISTNRFKTGTPPRLKRDTINYDILEVQYSDEHPIPFSYLNVDTSNLLNHG 272

Query: 237 QIECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            I+C  TRT+  TH I+ EN+     Y SG     GPRYCPS+  KI RF + N H ++L
Sbjct: 273 VIQCYKTRTHKATHSIVRENLHLLPDYESGYGIGLGPRYCPSLPAKITRFPDVNHHIVWL 332

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG+++ +VYPNG+S A P+E+Q + +RTIPGLE V I  PGY +EYDYI+ + L  TL
Sbjct: 333 EPEGVDSHLVYPNGLSGAFPQEVQLKLLRTIPGLENVEIDTPGYDVEYDYIDARLLKHTL 392

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDD 414
           E K I  L+ AGQI GTTGYEEAA  G+VAG N+A  S N       +R+D YIGV+IDD
Sbjct: 393 EFKHIKQLYFAGQICGTTGYEEAAGMGIVAGCNAALSSLNTNKEFVLNRSDGYIGVLIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L  KG  EPYRMFTSRAE R+ LR DNAD R+   G+    I  +  +R     ++Y  +
Sbjct: 453 LVRKGTNEPYRMFTSRAEDRLFLRIDNADLRMLKKGLYCELI--KNPERLNNIREKYVKV 510

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---------- 524
           ++ +  L      ++    SFK   +++  ++ L     +I  + +I  +          
Sbjct: 511 QAAINRLRTIILPMNRWDPSFKSS-ESKNGWDMLGTSGMTIDRIEAIVNEYYPKGTIATV 569

Query: 525 ---------------------------ARKFSSLVIE-RLQIES------SYAAYTGRQM 550
                                      A K S  + E  +QI +       YA +  RQ 
Sbjct: 570 CKHKMSTAENEGLAKAFETAEENLNTQANKISGKLTEYSMQIRNVIEARCKYAPFVERQA 629

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPA--------------LSNELKEKLSILKPFNLLQAS 596
            + +         I  D +Y+                  LS E  E L+  +P  + +A+
Sbjct: 630 KQMERTLRGGSVPICPDMEYTRYACFSDFNVCHREQFAFLSKEEVEVLNKYRPGTISEAA 689

Query: 597 KIEGMTPAALNLLLIYIKK 615
            + G+TPA++ LL   I K
Sbjct: 690 DLPGVTPASITLLAAQIHK 708


>gi|315928776|gb|EFV08048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 531

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/454 (49%), Positives = 294/454 (64%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
           MFTSRAE+R+ LR +NA  RL   G  LG + E+
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQ 455


>gi|257452997|ref|ZP_05618296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_5R]
 gi|317059537|ref|ZP_07924022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. 3_1_5R]
 gi|313685213|gb|EFS22048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. 3_1_5R]
          Length = 614

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/617 (40%), Positives = 365/617 (59%), Gaps = 10/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDVIVVGGGHAGCEAALASARLGLKTAIITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MGR  D   +Q + LN  KGPA R  R QAD+ LYR  M+  +   ENL ++Q  
Sbjct: 62  ILGGEMGRHTDQFNLQLKHLNESKGPAARVTRGQADKFLYRTNMRLTLEHTENLSILQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +++ +  +  +     +  +V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEKLLVQEDEVYGVKTRLGIEYKAKSVILCTGTFLKGKVVIGDITYSAGRQGESAAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +      R +T TP R+D K+I + K ++   ++    FS  T+K  N  +   +T
Sbjct: 182 ENLRELGLQVERYQTATPPRIDKKSIDFSKLKELHGEKHPRYFSIFTEKKENTIVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F E+  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPEKTDHQIFLEMESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE+  I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQDEILHTISGLEQAKIMRYGYAVEYDYMPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAGIN+ARK    + I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLVAGINAARKILGKNPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLK 479
           YR+  SR+EYR+ LR DNA  RL     ++G + + +    +K      QE   L+++  
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYDKTKEIGLLTQEKLLLVEKAIQNVKQEVERLKTISI 481

Query: 480 SLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S+   ++ L     S  F +  K     +        ++ L  I PD  +F    IE + 
Sbjct: 482 SMQEANQFLEKKQCSDFFSKGVKIADVLKKKEITYLDLKELIEI-PDYPEFVRNQIETIL 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               +     +Q+++ KE+   E + IPKDFD+SS+  +SN     L  +KP ++ +A +
Sbjct: 541 KYEIFMEREEKQILKFKEL---EHQFIPKDFDFSSVKGISNIALSGLLEVKPLSIGEAGR 597

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+T   L LL+ +++
Sbjct: 598 ISGVTGNDLALLIAHLR 614


>gi|257462447|ref|ZP_05626860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D12]
 gi|317060107|ref|ZP_07924592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. D12]
 gi|313685783|gb|EFS22618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. D12]
          Length = 615

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/631 (39%), Positives = 362/631 (57%), Gaps = 38/631 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARLGLKTAMITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M +  D   +Q + LN  KGPA R  R QAD+ LYR+ M+R +   ENL ++Q  
Sbjct: 62  ILGGEMAKHTDHFNLQLKHLNESKGPAARVTRGQADKFLYRIHMRRVLEHTENLHLLQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS +  +     +   V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEEVLVENGHISGVKTRLGIQYKAKAVILCTGTFLKGKVVIGDIVYSAGRQGESSAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +         R +T TP RLD K+I + K ++   +E    FS  T K  N+ +   +T
Sbjct: 182 ENLRALGLKVERYQTATPPRLDKKSIDFSKLKELHGEEYPRYFSIFTQKKKNKTVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F ++  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPDKTEHQIFLELESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE   I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQEKILHTICGLEHAKIMRYGYAVEYDYVPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK  +   I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLIAGINAGRKILQKSPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+  SR+EYR+ LR DNA  RL     ++G +   +           +FL   ++ ++ 
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYEKTKEIGLLSPEK----------ISFLEEAIEKVIQ 471

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEF---------------LSYPDFSIQNLFSICPDA 525
             K L + SIS ++     K +   +F               +SY D         CP+ 
Sbjct: 472 EVKRLKNISISMQEANQFLKNKNCMDFFSKGVKIADILKRKEISYLDLEELIELPECPE- 530

Query: 526 RKFSSLVIERLQIES--SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
                    R QIE+   Y  +  R+  +  + K  E++LIP++FD+SS+  +SN     
Sbjct: 531 -------FVRNQIETILKYEIFMEREEKQILKFKQLEQQLIPQNFDFSSVKGISNIALSG 583

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L  +KP ++ +A +I G+T   L LL+ +++
Sbjct: 584 LLEVKPLSIGEAGRISGVTGNDLALLIAHLR 614


>gi|269115303|ref|YP_003303066.1| glucose inhibited division protein A [Mycoplasma hominis]
 gi|268322928|emb|CAX37663.1| Glucose inhibited division protein A [Mycoplasma hominis ATCC
           23114]
          Length = 606

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/613 (39%), Positives = 356/613 (58%), Gaps = 12/613 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++D IVIGGGHAG EA    AK     AL+T   + +  + CNP+IGG  KG + RE
Sbjct: 1   MTNNFDAIVIGGGHAGIEATYALAKRNFKVALVTLNINRLAMLPCNPSIGGSAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN  KGPAV   R Q D+E Y   + ++I  Q+N+ +IQ
Sbjct: 61  IDALGGVQGFFADNAMIQIKMLNTSKGPAVWSLRAQIDKEKYSEIILKDIEKQKNITLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E +    E      I   ++  +    V++TTG ++   I  G+     G  G+  S++
Sbjct: 121 DEASDLIVEDGTCVGIETLEHGKLYSKVVIMTTGVYMNSRILRGENIKYDGPDGEKTSST 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  K+ F+  RLKTGTP R+   +I + K EK+  ++  + FS  ++K  + Q  C 
Sbjct: 181 LSKNLKKYGFEIIRLKTGTPCRIYTDSIDFSKVEKEVLEKNELCFSSRSNKKLDEQTCCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T L+T  II++N+K S++YSG I   GPRYCPS+EDKIVRF E++ H IF EPE   
Sbjct: 241 LTHTTLKTKEIILKNLKRSSLYSGIIIGIGPRYCPSVEDKIVRFQEKDTHHIFFEPETAR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D++Y NG+ST++PE++Q + I +IPGLE   + + GYAIEYD INP  L+ +LE+K + 
Sbjct: 301 GDIMYINGLSTSMPEDVQDEMIASIPGLEHARVQKYGYAIEYDAINPLNLYKSLESKILK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQ NGT+GYEEAAAQGL+AGIN+A K + L+ +   R D YIGV+IDD+ +KG  
Sbjct: 361 NFFSAGQPNGTSGYEEAAAQGLIAGINAANKLDNLEPLIIKRNDGYIGVLIDDIVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAE+R+ LR DN D RL         I +          +E++ +    K +
Sbjct: 421 EPYRMLTSRAEFRLLLRNDNVDERLYKYAYDNKMISK----------EEHDRIEEKYKII 470

Query: 482 VLTSKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             T + L +  +S K D G+       +SY    + N      D    +   I+ + I+ 
Sbjct: 471 AETVEKLKNEYVSSKSDVGQKYNVTNGMSYLKL-LSNPEVDPVDILGSNFPYIDEITIQV 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q   A ++   E+  +PKD DY S+  L+ E ++KL  ++P  + QA++I G
Sbjct: 530 RLYGYLKKQESAADKMLRLEQLKLPKDIDYWSVDNLATEARQKLDKIRPETIGQAARISG 589

Query: 601 MTPAALNLLLIYI 613
           + PA + +L+ Y+
Sbjct: 590 INPADIQMLIFYL 602


>gi|182412705|ref|YP_001817771.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Opitutus terrae PB90-1]
 gi|177839919|gb|ACB74171.1| glucose inhibited division protein A [Opitutus terrae PB90-1]
          Length = 625

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/626 (38%), Positives = 347/626 (55%), Gaps = 39/626 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +IV G GHAG EA+  AA++GA T L+T    T+G MSCNPAIGG  KG +VREIDAL G
Sbjct: 1   MIVCGAGHAGIEASLAAARVGAFTLLLTGNLDTVGQMSCNPAIGGQAKGQIVREIDALGG 60

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
            M    D  GIQFR+LN  KGPAV+ PR Q D++ Y+  ++  +  Q +L + Q  V G 
Sbjct: 61  EMAINTDVTGIQFRLLNHTKGPAVQSPRAQCDKKAYQFRLKHTLELQPHLQLFQATVTGL 120

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             +   +       +      TVV+TTGTFLRG++HIG  K   GR+GD  + +L  S  
Sbjct: 121 IFDGAKVIGCRTNLDIEFYGRTVVVTTGTFLRGLMHIGSNKNEGGRLGDFSARTLSGSLQ 180

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN------------ 235
           +   +  R KTGTP RL G+++ + K E+Q  D     F+F   +               
Sbjct: 181 EAGIELRRFKTGTPPRLLGRSLDFSKMEEQKGDANPTFFAFHDTREDGGVFHVEHGKPQG 240

Query: 236 -------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                   Q+ C +T T   T  ++ EN+  SA+Y G+I+  GPRYCPSIEDK VRF ++
Sbjct: 241 EAIPPGCEQVSCWMTYTTARTAELVRENLSRSAMYGGEIEGVGPRYCPSIEDKFVRFADK 300

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H +FLEPEG  TD  Y NG+ST+LP ++Q + + +IPGL +  ++RP YA+EYDY  P
Sbjct: 301 PRHLLFLEPEGRGTDEFYVNGLSTSLPFDVQLELVHSIPGLGEAVLLRPAYAVEYDYAPP 360

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LE++++ GLFLAGQINGT+GYEEAA QGL+AG+N+ARK      +   R ++YI
Sbjct: 361 TQLKMSLESQRVEGLFLAGQINGTSGYEEAAGQGLIAGVNAARKGRGEQPLVLGRHEAYI 420

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV+IDDL +KG  EPYRMFTSRAE+R+ L   +A+ RL         +   R    A+  
Sbjct: 421 GVLIDDLVTKGTEEPYRMFTSRAEHRLLLNHGSAELRLLHHASGCKLLNVNRLDNIARKK 480

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
           +        L+S   +   L+   I  +Q+ +     E +                  + 
Sbjct: 481 EAIESWVRRLESERTSEGTLA--EIIRRQNARAELPSELM------------------RQ 520

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S  V + +     Y+ Y  R+     ++   E   IP   DY  +P L  E   KL+  +
Sbjct: 521 SKPVRDEVLYRVLYSGYWEREQRHIDKLAQIEAVRIPAAIDYLRIPGLRRESALKLAAQR 580

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  L QAS+I G+ PA +++L++ IK
Sbjct: 581 PDTLGQASRISGVNPADVSILMVLIK 606


>gi|226357392|ref|YP_002787132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus deserti VCD115]
 gi|259495845|sp|C1D0A9|MNMG_DEIDV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226319382|gb|ACO47378.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme (glucose-inhibited division protein A)
           [Deinococcus deserti VCD115]
          Length = 601

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/616 (39%), Positives = 355/616 (57%), Gaps = 25/616 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  AAK     AL+    +T+G M CNPA+GG GK  LV E+ AL
Sbjct: 4   WNVIVIGGGHAGLEAAWAAAKF-ERVALLIGNPATVGRMPCNPAVGGPGKSQLVFEVQAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  I     +D+++GE A
Sbjct: 63  GGLMGRLADETAIHTRVLNASKGPAVQSLRVQNERDAYAERAQDVIFGHAGIDIVRGEAA 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              ++      +V  D   +   +VV+  GTF+RGV   G+   P GR G+ PS  L   
Sbjct: 123 DLESDGRGGWLVVTTDGRRLAARSVVVAAGTFMRGVTWYGRHSRPEGRQGEPPSRFLSAP 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI--T 243
                    R KTGTP R+    + + +  +  AD +  P  F T +   R  E     T
Sbjct: 183 LASAGHVLKRYKTGTPPRVRADAVNFSELLEIPADPQ--PRGF-TGRPGPRATESPTWQT 239

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I  N+  S +Y+GDI+  GPRYCPSIEDK+VRF   + H +F+EP+G+ T 
Sbjct: 240 HTTPETHRLIQANLHESPMYAGDIEGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVQTS 299

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G S++LP  +Q Q +RT+PG E+  I R  YA+EYD ++  EL   LE++ + G+
Sbjct: 300 EVYLQGFSSSLPPHLQDQLVRTLPGFEQAVIQRYAYAVEYDVVDSTELTLNLESRYLPGV 359

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAG+ +AR+S  L+     R   Y+GV++DDL  KG  EP
Sbjct: 360 FTAGQINGTSGYEEAAAQGLVAGMAAARRSLGLEEQVIGRETGYLGVLLDDLVFKGSDEP 419

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLV 482
           YRM TSR E+R+ +R DNAD RLTP+G++LG + +    R  AKY +    L +L +  +
Sbjct: 420 YRMMTSRVEHRLLVRQDNADERLTPLGLRLGLVTDAEASRVEAKYSRVQAGLEALQRQRI 479

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
                            + +T   +L  P+F++ ++ ++  +    ++   E L+I   Y
Sbjct: 480 -----------------QGQTGDSWLRRPEFALADVEALGIELPVLAAEEREALEIRVKY 522

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  R   + +  +   +RL  +  D++ + ALSNE +EKL+  +P  + QA++I G+ 
Sbjct: 523 AGYIDRARRQLQS-EAHARRLSLEGVDFAGIAALSNEAREKLARHQPQTVDQAARISGVR 581

Query: 603 PAALNLLLIYIKKNTV 618
            A + +LL+++K+  V
Sbjct: 582 HADIGVLLVHLKQQRV 597


>gi|15805068|ref|NP_293753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus radiodurans R1]
 gi|21263701|sp|Q9RYC3|MNMG_DEIRA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|6457686|gb|AAF09619.1|AE001866_6 gidA protein [Deinococcus radiodurans R1]
          Length = 600

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/625 (40%), Positives = 355/625 (56%), Gaps = 38/625 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + ++VIVIGGGHAG EAA  AAK  +  AL+    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 2   KGWNVIVIGGGHAGLEAAWAAAKF-SRVALLVGNPATVGRMPCNPAVGGPGKSQLVFEVQ 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  R+LN  KGPAV+  R Q +R+ Y    Q  I     +++++GE
Sbjct: 61  ALGGLMGRLADDTAIHTRMLNASKGPAVQSLRVQNERDAYAERAQDVIFGHSEIEIVRGE 120

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D   +   +VVL  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 121 AADLEQDGQGGWVVVTSDGRRLHARSVVLAAGTFMRGVTWYGRQSRPEGRQGEPPSRFLS 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIE 239
               +      R KTGTP R+   ++       +FAD   IP        T     R  E
Sbjct: 181 APLERGGHVLKRYKTGTPPRVRADSV-------RFADLLEIPADPQPRGFTGTPGPRAAE 233

Query: 240 CGI--TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
                T T  +TH +I EN+  S +Y+GDI+  GPRYCPSIEDK+V+F   + H +F+EP
Sbjct: 234 SPTWQTHTTPQTHALIQENLHESPMYAGDIEGLGPRYCPSIEDKVVKFAHHDRHLLFVEP 293

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           +G+ T  VY  G S++LP  +Q + +RT+PG E+  I R  YA+EYD ++  EL   LE+
Sbjct: 294 DGVQTSEVYLQGFSSSLPPRLQDELVRTLPGFEQAVIQRYAYAVEYDVVDSTELTLNLES 353

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+ GLF AGQ+NGT+GYEEAAAQGLVAG  +AR+S  LD     R  SY+GV++DDL  
Sbjct: 354 KKLPGLFTAGQLNGTSGYEEAAAQGLVAGTAAARRSLGLDEQVIGRETSYLGVLLDDLVF 413

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRM TSR E+R+ +R DNAD R+TPIG  LG + +       +  ++Y  ++S 
Sbjct: 414 KGSDEPYRMMTSRVEHRLLVRQDNADERMTPIGHALGLVDD---AELIRVQEKYARVQSG 470

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSLVIE 534
           +KSL              KQ  + +TA  +L  P+ S   ++ L +  P   +  +   E
Sbjct: 471 IKSLS-------------KQRMQGQTADAWLRRPELSLADVETLGATLPA--ELGASERE 515

Query: 535 RLQIESSYAAYTGRQMIEAK-EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            ++I   YA Y  R   + + E K  E  L     +++ + ALSNE +EKL+ L+P  + 
Sbjct: 516 AVEIRVKYAGYIARAESQLRSEAKARELSL--SGVNFAGITALSNEAREKLTRLQPQTVE 573

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+  A ++ LL+++K   V
Sbjct: 574 QASRISGVRHADISALLVHLKGQRV 598


>gi|19703359|ref|NP_602921.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24636854|sp|Q8RHA1|MNMG1_FUSNN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 1; AltName: Full=Glucose-inhibited division
           protein A 1
 gi|19713421|gb|AAL94220.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 628

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/626 (39%), Positives = 362/626 (57%), Gaps = 16/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MNKDYDVIVVGAGHAGVEAALASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             I+ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCVEEILVEDIKDTQNSNYIKKITGIKTRLGIIYNAKVIVLATGTFLKGKIVIGDVSYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSDKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKEKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRYGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE KKISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKKISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ-- 469
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I   
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKSINDV 480

Query: 470 --EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
             E N L+++  S+   +K L S  I  ++  K   A E L   D S  NL  +  +   
Sbjct: 481 YMEINNLKNISVSMNEANKFLESLDIE-ERFVKGVKASEILKIKDVSYDNL-KVFLNLND 538

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L  +
Sbjct: 539 YEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLDEV 598

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P ++ +A++I G+T   + L++ Y+
Sbjct: 599 RPLSIGEATRISGVTSNDITLIIAYM 624


>gi|328951745|ref|YP_004369080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinithermus hydrothermalis DSM 14884]
 gi|328452069|gb|AEB12970.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinithermus hydrothermalis DSM 14884]
          Length = 608

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/615 (39%), Positives = 354/615 (57%), Gaps = 22/615 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+V+GGGHAG EAA  AA+LGA   L+T     IG M CNPA+GG GK  LV EI A
Sbjct: 7   TFDVLVVGGGHAGIEAAWAAAQLGARVGLVTTNPDRIGLMPCNPAVGGPGKSQLVFEITA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGR+ADA  I  R LN  KGPAVR  R Q +R+ Y +  QR +L+  N+  ++GEV
Sbjct: 67  LGGLMGRLADATAIHTRTLNQSKGPAVRSLRVQVERDAYAVEAQRVLLAHPNVQAVRGEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   +  + + D   +    VVL+ GTFL GV+  G+   PAGR G+ P+  L  
Sbjct: 127 AHLWIEAGHLCGVQLVDGRRLAGRAVVLSAGTFLSGVVWYGRQSRPAGRQGEPPARFLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGIT 243
           S         R KTGTP R+   ++ +   E    D+   P SF  T       +    T
Sbjct: 187 SLRAVGHRLMRFKTGTPPRIRADSVNYGALEVVPPDD--PPGSFTGTPGPHAAAMPTWTT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   THR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF +++ H +F+EP+G++T 
Sbjct: 245 RTTARTHRLIQENLHLSPLYAGDIEGIGPRYCPSIEDKVVRFADKDSHLLFVEPDGIHTS 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LP E+Q + +R++PG E+  I R  YA+EYD ++P EL P L++KK+ GL
Sbjct: 305 ELYLQGFSSSLPPELQEEMVRSLPGFERAVIQRYAYAVEYDAVDPTELTPGLQSKKLPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AG+N+AR +     +   R   YIGV+IDDL  +GV EP
Sbjct: 365 FTAGQINGTSGYEEAAAQGLLAGVNAARFAAGEPEVHLPRESGYIGVLIDDLVHRGVDEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR E R+  R DNAD R+ P  ++ G    R +    +   +Y  +R+ L+ L  
Sbjct: 425 YRMMTSRVELRLLCRADNADERMVPYAVRWGL---RPKADLERVEAKYARVRAELERLA- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF--SICPDARKFSSLVIERLQIESS 541
                       + DG   +   +L  P+ S   L    + P+    +     ++++ + 
Sbjct: 481 ----------RVRVDGV--SGLHYLRRPEASYAALLERGLGPEV-PLTPEEAYQVEVRAK 527

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ+   + ++      +P   DY ++  LS E  EKL  ++P  + +A++I G+
Sbjct: 528 YAGYIERQIRLRERLRELSAYRLPAGLDYRTVHNLSREAMEKLERVRPATVAEAARIPGL 587

Query: 602 TPAALNLLLIYIKKN 616
             + +  LL+++ + 
Sbjct: 588 RDSDITALLVHLART 602


>gi|282850776|ref|ZP_06260151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 224-1]
 gi|282558184|gb|EFB63771.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 224-1]
          Length = 566

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/551 (43%), Positives = 321/551 (58%), Gaps = 5/551 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q    
Sbjct: 69  GGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQAVAD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L  +
Sbjct: 129 ELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKLPEN 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             K  F   R KTGTP R+DG T+ + KT+++  D++   FS+ +        Q+ C +T
Sbjct: 189 LEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKKPRHFSYTSKDSDYLKDQMSCYMT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG NT 
Sbjct: 249 YTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGRNTK 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I  L
Sbjct: 309 EIYVGAFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNIKHL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG  EP
Sbjct: 369 FTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K + +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKKVTI 488

Query: 484 -TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  +     S KQD      +  +FL  P  +   +  +          V E+++I  
Sbjct: 489 HPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVEIAL 548

Query: 541 SYAAYTGRQMI 551
            Y  Y  ++ +
Sbjct: 549 KYEGYIKKKRL 559


>gi|229020708|ref|ZP_04177435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1273]
 gi|228740603|gb|EEL90874.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1273]
          Length = 505

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/494 (44%), Positives = 314/494 (63%), Gaps = 7/494 (1%)

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L     + 
Sbjct: 8   EDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSEHLEEL 67

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLET 249
            FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T T+ ET
Sbjct: 68  GFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTYTSTET 127

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           HR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  VY  G
Sbjct: 128 HRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEVYVQG 187

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           +ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+ AGQI
Sbjct: 188 LSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLYTAGQI 247

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPYR+ TS
Sbjct: 248 NGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPYRLLTS 307

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-- 487
           RAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++  +   
Sbjct: 308 RAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLGSIIIKPRPEV 367

Query: 488 ---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I++ Y  
Sbjct: 368 QELIRSIGGSELKDGI--RASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQTKYEG 425

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  + + +   +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I G+ PA
Sbjct: 426 YIEKSLQQVDRMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRISGVNPA 485

Query: 605 ALNLLLIYIKKNTV 618
            +++LL+YI++  +
Sbjct: 486 DVSILLVYIEQGKI 499


>gi|218297060|ref|ZP_03497737.1| glucose inhibited division protein A [Thermus aquaticus Y51MC23]
 gi|218242615|gb|EED09152.1| glucose inhibited division protein A [Thermus aquaticus Y51MC23]
          Length = 596

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/593 (40%), Positives = 335/593 (56%), Gaps = 32/593 (5%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KGPA
Sbjct: 28  VALVTVNPERIGMMPCNPAVGGPGKSQLVAELVALGGLMGRAADAAAIHTRVLNRSKGPA 87

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+  R Q DR+LY L  Q EIL++  + V++GEVA    E   +  +   D   I    V
Sbjct: 88  VQSLRVQVDRDLYALKAQ-EILAERPIAVVRGEVASLWVEGGRLLGVRTVDGRGIPARAV 146

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   ++ 
Sbjct: 147 VVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLRAVGHTLRRFKTGTPPRIRADSV- 205

Query: 211 WDKTEKQFADERLIPFSFM------TDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
            D +E       + P SF        D++   Q     TRT   THR+I+EN+  S +Y+
Sbjct: 206 -DFSELSLVPPEVPPGSFTGKPGPYADRLPTWQ-----TRTTGRTHRLILENLHLSPLYA 259

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           GDI+  GPRYCPSIEDK+VRF ++  H +F+EP+GL T  VY  G S++LP E+Q + +R
Sbjct: 260 GDIEGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLATSEVYLQGFSSSLPPELQEEMVR 319

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++PG  +  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+
Sbjct: 320 SLPGFSRAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLFSAGQVNGTSGYEEAAAQGLL 379

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AG+N+AR +  L  +   R   YIGVM+DDL  +G  EPYRM TSR E R+  R DNAD 
Sbjct: 380 AGLNAARYALGLPEVHLGRETGYIGVMVDDLVGRGTDEPYRMMTSRVELRLLCRADNADE 439

Query: 445 RLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
           RL P+ +  G       +R  AKY +    LR L                + + DG   +
Sbjct: 440 RLVPLAVAWGLRPREDLERVRAKYARVEAELRRL---------------EALRVDGV--S 482

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
             ++L  P+ + + L    P     S    E+++I + YA Y  RQ    ++++  E   
Sbjct: 483 GLQWLRRPENTYEALLERFPSPTPLSPEEREQVEIRAKYAGYIERQEKLREKMRDLEALR 542

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P+  DY  +P LS E  EKLS  +P  L +A+++ G+  + L  LL+++++ 
Sbjct: 543 LPEGLDYPRVPGLSREAVEKLSRFRPRTLAEAARVPGVRDSDLTALLVHLRRE 595


>gi|7657947|emb|CAB89205.1| putative glucose inhibited division protein A [Thermus
           thermophilus]
          Length = 596

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 351/614 (57%), Gaps = 23/614 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG         LG    L+T     IG M CNPA+GG GK  LV E+ AL
Sbjct: 4   YDVVVVGGGHAGSRRPG-RRPLGVPGGLVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGR ADAA I  RVLN  KGPAV+  R Q DR+LY L  Q EIL++  ++V++GEVA
Sbjct: 63  GGLMGRAADAAAIHTRVLNRSKGPAVQSLRVQVDRDLYALKAQ-EILAERPVEVLRGEVA 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +   D   +    VV+  GTFL GV+  G+   PAGR G+ P+  L  S
Sbjct: 122 ALWVEGGRLLGVRTVDGRTLPAKAVVVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
                    R KTGTP R+   ++ + + E       + P SF  +   +  ++    TR
Sbjct: 182 LKAVGHTLRRFKTGTPPRIRADSVDFGRLE--VVPPEVPPGSFTGNPGPHAARLPTWQTR 239

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   THR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  
Sbjct: 240 TTARTHRLIRENLHLSPLYAGDIQGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTE 299

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G S++LP E+Q + +R++PG E+  I R  YA+EYD ++P EL   L+++ + GLF
Sbjct: 300 VYLQGFSSSLPPELQEEMVRSLPGFERAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLF 359

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AG+N+AR +  L  +   R   YIGV++DDL  +G  EPY
Sbjct: 360 SAGQVNGTSGYEEAAAQGLLAGLNAARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPY 419

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVL 483
           RM TSR E R+  R DNAD RLTP+ +  G   +   +R  AKY +    LR L      
Sbjct: 420 RMMTSRVELRLLCRADNADERLTPLAVAWGLRPKEDLERVEAKYRRVAAELRRL------ 473

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             + L    +S           ++L  P+ + + L    P +   S     ++++ + YA
Sbjct: 474 --QALRVEGVS---------GLQWLRRPENTYRALAERFPPSEPLSPEEAYQVEVRAKYA 522

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ    +++K  E   IP+  D+  +P LS E  EKLS  +P +L +A++I G+  
Sbjct: 523 GYIERQERLREKMKDLEAFRIPEGMDFPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRD 582

Query: 604 AALNLLLIYIKKNT 617
           + L  L +++++  
Sbjct: 583 SDLTALAVHLRRGA 596


>gi|256846685|ref|ZP_05552141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
 gi|256717905|gb|EEU31462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
          Length = 627

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 364/627 (58%), Gaps = 18/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 G-----------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                       +    + EK +I  I  +   +     ++L TGTFL+G I IG +   
Sbjct: 121 DCAEEILVEDIKDSKNLSYEKKVIG-IKTRLGIIYNAKAIILATGTFLKGKIVIGDVTYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRELGVKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F ++  
Sbjct: 240 KKEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV
Sbjct: 360 LYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ- 469
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K I  
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEKSIND 479

Query: 470 ---EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              E N L+++  S+   ++ L +  I  ++  K   A E L   D S  NL  +  +  
Sbjct: 480 VYMEINNLKNISVSMNEANRFLENLGIE-ERFVKGVKASEILKIKDVSYDNL-KVFLNLD 537

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ 
Sbjct: 538 DYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNE 597

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++P ++ +A++I G+T   + L++ ++
Sbjct: 598 VRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|2281305|gb|AAC45494.1| glucose inhibited division protein homolog GidA [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 535

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/527 (44%), Positives = 317/527 (60%), Gaps = 12/527 (2%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
           + T L+T   + +  M CNP+IGG  KG +VREIDAL G MGR  D   IQ ++LN  KG
Sbjct: 11  SKTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNTGKG 70

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF--NTEKNIISSIVMQDNSMIR 146
           PAVR  R QAD++ Y  +M+  +  QENL + QG V     + EK  +  +     +   
Sbjct: 71  PAVRALRAQADKDEYAASMKNTVSDQENLTLRQGMVEELILDDEKQKVIGVRTSTGTQYG 130

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V++TTGT LRG I IG+LK  +G      S  L ++  +  F+ GR KTGTP R+  
Sbjct: 131 AKAVIITTGTALRGEIIIGELKYSSGPNNSLSSIGLADNLREIGFEIGRFKTGTPPRVLA 190

Query: 207 KTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
            +I +DKTE Q  DE    FSFM+  +     QI C +T T   +H I+ +N+  + ++S
Sbjct: 191 SSIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQIPCWLTYTTENSHTILRDNLHRAPLFS 250

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG NT+ VY  G+ST++PE++Q   ++
Sbjct: 251 GIVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGRNTEEVYIGGLSTSMPEDVQFDLVK 310

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +IPGLE   ++RPGYAIEYD + P +L PTLETK ISGLF AGQ NGT+GYEEAA QGLV
Sbjct: 311 SIPGLENAKMMRPGYAIEYDVVMPHQLRPTLETKLISGLFTAGQTNGTSGYEEAAGQGLV 370

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+A K          R+++YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD 
Sbjct: 371 AGINAALKIQGKPEFILKRSEAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNADR 430

Query: 445 RLTPIGMKLGCIG----ERRQKRFAKYIQEYNFLRS-LLKSLVLTSKNLSSTSISFKQDG 499
           RLT IG ++G +     E  Q + A++ +E   L S  LK L  T + L        +D 
Sbjct: 431 RLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNSEKLKPLPDTQEKLGKLGFGPIKDA 490

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIESSYAAY 545
              T  EFL  P+ +   +      A +     V E ++ E +Y  Y
Sbjct: 491 --LTGAEFLKRPEVNYDEVIDFIGQAPEVIDRTVSELIETEITYEGY 535


>gi|55981941|ref|YP_145238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus thermophilus HB8]
 gi|81170587|sp|Q5SGV8|MNMG_THET8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|55773354|dbj|BAD71795.1| glucose inhibited division protein A [Thermus thermophilus HB8]
          Length = 597

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 338/589 (57%), Gaps = 22/589 (3%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KGPA
Sbjct: 29  VALVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVALGGLMGRAADAAAIHTRVLNRSKGPA 88

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+  R Q DR+LY L  Q EIL++  ++V++GEVA    E   +  +   D   +    V
Sbjct: 89  VQSLRVQVDRDLYALKAQ-EILAERPVEVLRGEVAALWVEGGRLLGVRTVDGRTLPAKAV 147

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   ++ 
Sbjct: 148 VVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLKAVGHTLRRFKTGTPPRIRADSVD 207

Query: 211 WDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           + + E       + P SF  +   +  ++    TRT   THR+I EN+  S +Y+GDI+ 
Sbjct: 208 FGRLE--VVPPEVPPGSFTGNPGPHAARLPTWQTRTTARTHRLIRENLHLSPLYAGDIQG 265

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  VY  G S++LP E+Q + +R++PG 
Sbjct: 266 IGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTEVYLQGFSSSLPPELQEEMVRSLPGF 325

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E+  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+N+
Sbjct: 326 ERAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLFSAGQVNGTSGYEEAAAQGLLAGLNA 385

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +  L  +   R   YIGV++DDL  +G  EPYRM TSR E R+  R DNAD RLTP+
Sbjct: 386 ARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLTPL 445

Query: 450 GMKLGCIGERRQKRF-AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
            +  G   +   +R  AKY +    LR L        + L    +S           ++L
Sbjct: 446 AVAWGLRPKEDLERVEAKYRRVAAELRRL--------QALRVEGVS---------GLQWL 488

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             P+ + + L    P +   S     ++++ + YA Y  RQ    +++K  E   IP+  
Sbjct: 489 RRPENTYRALAERFPPSEPLSPEEAYQVEVRAKYAGYIERQERLREKMKDLEAFRIPEGM 548

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           D+  +P LS E  EKLS  +P +L +A++I G+  + L  L +++++  
Sbjct: 549 DFPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRDSDLTALAVHLRRGA 597


>gi|269123889|ref|YP_003306466.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
 gi|268315215|gb|ACZ01589.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
          Length = 619

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/628 (39%), Positives = 362/628 (57%), Gaps = 28/628 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EA+  AA+LG   AL T     I  MSCNPAIGG GK H+V EI 
Sbjct: 2   QNYDIIVVGAGHAGVEASLAAARLGKKVALFTIYLDNIAMMSCNPAIGGPGKSHIVSEIG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M    D   +Q + LN  KG A +  R QAD+  YR+ M+  I  ++NLDVIQ  
Sbjct: 62  MLGGQMAVHIDKYNLQLKNLNHTKGLAAKITRAQADKYWYRIKMREIIEKEDNLDVIQ-- 119

Query: 124 VAGFNTEKNIISSIVMQDNSMI-----------RCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                   N++  +++ DN  +               V+L TGTFL G   IG +K  AG
Sbjct: 120 --------NMVEDLILDDNKKVIGVIDALGLKYSAKAVILCTGTFLNGEYIIGDVKYSAG 171

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R G+  SNSL ++ +K+  +  R +T TP R+D K+I  D  EK + +     FS+M++K
Sbjct: 172 RQGEKASNSLPDNLVKYGIEMDRYQTATPPRIDKKSINLDILEKLYGETNPRYFSYMSNK 231

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              + +E  +T T  ET ++  E +K+S I +G + + GPR+CPS++ KI+ F ++  HQ
Sbjct: 232 TDEKPLETWLTFTTEETIKVGQELLKYSPIVTGIVSTKGPRHCPSLDRKIMNFPDKTDHQ 291

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IFLE E   +D +Y NG +TA+P   Q + I+TI GLE   I+R GYA+EYD+I  ++L 
Sbjct: 292 IFLEQESRESDEIYVNGFTTAMPPFAQEKLIKTIKGLENAKILRYGYAVEYDFIPARQLN 351

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            +LE+K I  LF AG INGT+GYEEAAAQG +AG+N+ARK +  + I  SR + YIGV+I
Sbjct: 352 FSLESKIIENLFQAGTINGTSGYEEAAAQGFIAGVNAARKIDGKEPIIISRDEGYIGVLI 411

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DD+ +K   EPYR+  SRAEYR++LR DN   RL     ++G + + + K     IQ  +
Sbjct: 412 DDIINKETPEPYRVLPSRAEYRLTLRQDNVFIRLLEKSKEIGLLDKSKLKELEDNIQIIS 471

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARK 527
                LK + +   N  +  I  K D  T      TA+EFL+  + +  NL  +  + + 
Sbjct: 472 DEIERLKEIKIYP-NKENNDIIKKIDKNTSHNNVMTAFEFLARQEITYDNL-KLFIETKD 529

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
              +  E+++IE+ Y  +  R+  + ++ K  E   IP+DF+Y  +  LSN     LS  
Sbjct: 530 LPEISKEQVEIEAKYRIFIERERNQIEKFKKLENIAIPEDFNYEIVKGLSNIAISGLSYT 589

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           KP N+ QA++I G+T   + +L+  +K+
Sbjct: 590 KPKNIGQATRISGVTYNDIAILVSILKE 617


>gi|291461017|ref|ZP_06026473.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379412|gb|EFE86930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
          Length = 630

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 360/639 (56%), Gaps = 36/639 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV 
Sbjct: 3   IMDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVT 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +I
Sbjct: 63  EIDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKNENISLI 122

Query: 121 QGEV-----------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           Q  V              + EK +I  +  +   +     +VL TGTFL+G I IG +  
Sbjct: 123 QDCVEEILVEDIKDRQNLSYEKKVIG-VKTRLGLIYNTKAIVLATGTFLKGKIVIGDVTY 181

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  
Sbjct: 182 SAGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIF 241

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           T K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F E+ 
Sbjct: 242 TKKEKNNTVPTWLTYTSEETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPEKA 301

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    
Sbjct: 302 KHQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPAS 361

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           +L+P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+++K    + +   R+++YIG
Sbjct: 362 QLYPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNASKKIKGEEPVIIDRSEAYIG 421

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + R         
Sbjct: 422 VLIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDR--------- 472

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDG-------------KTRTAYEFLSYPDFSIQ 516
              FL   +  + +   NL + S+S  +               K   A E L   D S  
Sbjct: 473 -IEFLEKAINDVYMEINNLKNISVSMNEANNFLEKLGVEERFVKGVKASEILKIKDVSYD 531

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
           +L +   +   +   V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +
Sbjct: 532 DLKTFL-NLNDYEDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIDKNINYDDIKGI 590

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           SN  +  L+ ++P ++ +A++I G+T   + L++ ++ +
Sbjct: 591 SNIARAGLNEVRPLSIGEATRISGVTSNDITLIIAHMNQ 629


>gi|225164332|ref|ZP_03726599.1| glucose inhibited division protein A [Opitutaceae bacterium TAV2]
 gi|224801066|gb|EEG19395.1| glucose inhibited division protein A [Opitutaceae bacterium TAV2]
          Length = 676

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/651 (37%), Positives = 347/651 (53%), Gaps = 64/651 (9%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA+T L+T    TI  MSCNPAIGG  KG +VREIDAL G M    D  GIQFR+LN  
Sbjct: 1   MGANTLLVTGNVDTIAQMSCNPAIGGQAKGQIVREIDALGGEMAINTDLTGIQFRLLNES 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+ PR Q D++ Y+  ++  +  Q +L V Q  VAG   E       V+   + + 
Sbjct: 61  KGPAVQSPRAQCDKKAYQYRLKHTLELQPDLQVFQATVAGLIYENTTAGRKVIGVRTNLD 120

Query: 147 CS----TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
                 TVV+TTGTFLRG++HIG  +   GR GD  + +L  SF++   +  RLKTGTP 
Sbjct: 121 IEFVGRTVVVTTGTFLRGLMHIGANQNEGGRAGDFSAKTLSASFLEAGIELQRLKTGTPP 180

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDK-------ITNR------------------- 236
           RL G+++ + K E Q  D R   F+F   +       +  R                   
Sbjct: 181 RLLGRSLDFSKMEPQHGDARPTLFAFHDTRDPQDLFHVEQRPHPSPPPPPPPTQTRLGWA 240

Query: 237 ----QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T T  +T RI  EN+  SA+YSG+I   G RYCPS EDKIVRF ++  H 
Sbjct: 241 PGSNQLPCWMTYTTADTARIARENLTRSAMYSGNITGTGARYCPSFEDKIVRFADKPRHL 300

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +TD  Y NG+ST++P ++Q Q +R++PGLE   ++RP YA+EYD+  P +LF
Sbjct: 301 LFLEPEGRSTDEYYVNGLSTSMPFDVQLQLVRSVPGLENAVLMRPAYAVEYDFAPPTQLF 360

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+LE+KK+  LF AGQINGT+GYEEAA QGLVAG+N+  K      +  +R ++Y GV+I
Sbjct: 361 PSLESKKVENLFFAGQINGTSGYEEAACQGLVAGVNAVNKVRGAAPLIIARHEAYTGVLI 420

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG  EPYRMFTSRAEYR+     +A+ RL       G +   R  R  +  +   
Sbjct: 421 DDLVTKGTTEPYRMFTSRAEYRLLFNHGSAELRLLHHARAHGLVSATRLARIEEKKRRIE 480

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY------------PDFSIQNLFS 520
           +  + L++  + +   ++       D   R                    P    +N   
Sbjct: 481 YWITTLETTRIPADIAATAGQGTWGDFIRRAGSAAGQGRGGEGGREASPRPPSDAENTIE 540

Query: 521 I---------------CPDARKFSSLVIERLQ---IESSYAAYTGRQMIEAKEIKFEEKR 562
                            P    F++L  E  Q       Y  Y  R+  + +++   EK 
Sbjct: 541 TQEPSKRVDGGLGETSLPLPSDFTALPDELRQEVLYRVGYKGYLEREQRQIEKLSHVEKI 600

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            IP DFDY ++  L  E  +KL    P+NL QAS+I G+ PA +++L++ +
Sbjct: 601 KIPPDFDYRAVRGLRLESAQKLIAAHPYNLGQASRISGVNPADISILMVAL 651


>gi|296328795|ref|ZP_06871309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154130|gb|EFG94934.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 632

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 366/626 (58%), Gaps = 16/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 5   MDKDYDVIVVGAGHAGVEAALASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 65  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 124

Query: 122 GEVAGFNTE--KNIISSIVMQDNSMIR--------CSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E  K+  +S  +++ + I+           +VL TGTFL+G I IG +   A
Sbjct: 125 DCVEEILVEDIKDSQNSNYIKEVTGIKTRLGIIYNAKVIVLATGTFLKGKIVIGDVSYSA 184

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 185 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFTK 244

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 245 KEKNNTVPTWLTYTSDKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKEKH 304

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 305 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 364

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 365 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 424

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ-- 469
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I   
Sbjct: 425 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKSINDV 484

Query: 470 --EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
             E N L+++  S+   +K L +  I  ++  K   A E L   D    +L  +  +   
Sbjct: 485 YMEINNLKNISVSMNEANKFLENLDIE-ERFVKGVKASEILKIKDVRYDDL-KVFLNLND 542

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L  +
Sbjct: 543 YEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLDEV 602

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P ++ +A++I G+T   + L++ Y+
Sbjct: 603 RPLSIGEATRISGVTSNDITLIIAYM 628


>gi|260495367|ref|ZP_05815494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
 gi|260197145|gb|EEW94665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
          Length = 625

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/628 (38%), Positives = 364/628 (57%), Gaps = 18/628 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 G-----------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                       +    + EK +I  I  +   +     +VL TGTFL+G I IG +   
Sbjct: 121 DCAEEILVEDIKDSQNSSYEKKVIG-IKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S         R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRDLGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ +T  +I E ++ S I SG + ++GPR+CPSI+ K++ F ++  
Sbjct: 240 KKERNNTVPTWLTYTSEKTIEVIKEMMRFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV
Sbjct: 360 LYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ- 469
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I  
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEIGIVDKDKIEFLEKAIND 479

Query: 470 ---EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              E N L+++  S+   +K L S  I  ++  K   A E L   D S  +L +   +  
Sbjct: 480 VYMEINNLKNISVSMNEANKFLESLDIE-ERFVKGVKASEILKIKDISYDDLKTFL-NLN 537

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ 
Sbjct: 538 DYEDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNE 597

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           ++P ++ +A++I G+T   + L++ Y+K
Sbjct: 598 VRPLSVGEATRISGVTSNDITLIIAYMK 625


>gi|237743153|ref|ZP_04573634.1| glucose inhibited division protein A [Fusobacterium sp. 7_1]
 gi|229433449|gb|EEO43661.1| glucose inhibited division protein A [Fusobacterium sp. 7_1]
          Length = 627

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 363/627 (57%), Gaps = 18/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 G-----------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                       +    + EK +I  I  +   +     +VL TGTFL+G I IG +   
Sbjct: 121 DCAEEILVEDIKDSQNLSYEKKVIG-IKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S         R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRDLGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  
Sbjct: 240 KKERNNTVPTWLTYTSEKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV
Sbjct: 360 LYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ- 469
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I  
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEIGIVDKDKIEFLEKAIND 479

Query: 470 ---EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              E N L+++  S+   +K L S  I  ++  K   A E L   D S  +L +   +  
Sbjct: 480 VYMEINNLKNISVSMNEANKFLESLDIE-ERFVKGVKASEILKIKDVSYDDLKTFL-NLN 537

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ 
Sbjct: 538 DYEDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNE 597

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++P ++ +A++I G+T   + L++ +I
Sbjct: 598 VRPLSVGEATRISGVTSNDITLIIAHI 624


>gi|294660579|ref|NP_853425.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Mycoplasma gallisepticum str. R(low)]
 gi|298286832|sp|Q7NAK6|MNMG_MYCGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|284812242|gb|AAP56993.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930922|gb|ADC30861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. R(high)]
          Length = 611

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 350/611 (57%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  + +K  + ++ C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKIVRF  +  HQIFLEPE L  D VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIVRFSNKPRHQIFLEPESLELDTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K I  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLIKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVNKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I + +   + + +++ N L   LK      K 
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKEQIDLYNQNLEKKNKLIEFLKD----KKV 480

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 481 GMYTLLKAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IPKD  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRIVNSLKNLESIKIPKDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|294784391|ref|ZP_06749682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
 gi|294487963|gb|EFG35318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
          Length = 627

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/630 (39%), Positives = 366/630 (58%), Gaps = 24/630 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KG A R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGSAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCST--------------VVLTTGTFLRGVIHIGKL 167
             V     E +I  S   Q++S I+  T              +VL TGTFL+G I IG +
Sbjct: 121 DCVEEILVE-DIKDS---QNSSYIKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDV 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS
Sbjct: 177 TYSAGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYFS 236

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
             T K  N  +   +T T+ ET  ++ E +++S I SG + ++GPR+CPSI+ K++ F +
Sbjct: 237 LFTKKEKNNTVPTWLTYTSEETIEVVREMMEYSPIVSGMVNTHGPRHCPSIDRKVLNFPD 296

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +  HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY  
Sbjct: 297 KTKHQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAP 356

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
             +L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      I   R+++Y
Sbjct: 357 ASQLYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPIIIDRSEAY 416

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IGV+IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G I + + +   K 
Sbjct: 417 IGVLIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIIDKDKIEFLEKA 476

Query: 468 IQ----EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           I     E N L+++  S+   +  L S  +  ++  K   A E L   D S  NL  +  
Sbjct: 477 IDDVYMEINNLKNISVSMNEANNFLESLGVE-ERFVKGVKASEILKIKDVSYDNL-KVFL 534

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +   +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  
Sbjct: 535 NLNDYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAG 594

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           L+ ++P ++ +A++I G+T   + L++ ++
Sbjct: 595 LNEVRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|26553620|ref|NP_757554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma penetrans HF-2]
 gi|38257609|sp|Q8EWN6|MNMG_MYCPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|26453626|dbj|BAC43958.1| glucose inhibited division protein [Mycoplasma penetrans HF-2]
          Length = 616

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/616 (38%), Positives = 337/616 (54%), Gaps = 12/616 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD +VIG GHAG EAA + AK     AL       +G+M CNP+IGG  KG + REID
Sbjct: 2   KKYDCLVIGAGHAGLEAAFILAKKKYKVALFVLDKKLVGNMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+    AD   +Q ++LN  KG      R Q D+  Y       I   E +D+I  E
Sbjct: 62  ALGGMQAIAADNTQLQMKLLNSSKGAGTWALRAQIDKLEYSKWFLNRIEENEYIDLIDKE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  +   DN     + +++TTGTFL   IHIG   I  G    + S  L 
Sbjct: 122 VNSIKFVNQKVCGVYTVDNQFFESNYLIVTTGTFLDSSIHIGHKVIKKGPDDFNGSYLLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
               + DF T RLKTGTP R+   +I + K + +    +   FS    K    N+Q  C 
Sbjct: 182 KQIKELDFQTIRLKTGTPPRILKNSIDYSKLQIEPGTNKKYSFSHFDRKFLDFNKQEVCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  TN + H II  N+  SA+YSG I   GPRYCPSIEDK+VRF ++  HQ+F+EPE  +
Sbjct: 242 LAFTNNKIHEIINNNLDKSAMYSGFITGTGPRYCPSIEDKVVRFNDKERHQLFVEPESKH 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G+S++LPE++Q Q ++ I G E   I +  YAIEYD INP +L+PTLETKKI 
Sbjct: 302 LDTIYLGGLSSSLPEDVQEQIVKNIVGFENAVIKKYAYAIEYDAINPIQLYPTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QGL+AGIN   +    + +   R ++YIGV+I+DL +K + 
Sbjct: 362 GLFFAGQINGTSGYEEAACQGLMAGINVLCQLENREPLVLKRNEAYIGVLIEDLINKEIT 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYR+ TSRAEYR+ LR DNAD RL   G +LG I +     + K ++ +N   + LK L
Sbjct: 422 DPYRLLTSRAEYRLELRNDNADQRLLKYGYELGLISQSHWDEYNKNLENFN---NTLKEL 478

Query: 482 -VLTSKNLSSTSISFKQDGK--TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
              T KN+      FK + +    T YE L  PD+S  ++     +         +++ I
Sbjct: 479 ETSTLKNVK----EFKYNSRKTNTTLYEILKRPDYSFIDMEPFLKNKNTLDEYWKDKVDI 534

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y   Q     + K  +   +    DY  +P +S E ++KL+ +KP  L QAS++
Sbjct: 535 YIKYGGYIKSQQKIINDTKNIDNIKLSSISDYKDVPNISLEARDKLNKVKPLTLGQASRV 594

Query: 599 EGMTPAALNLLLIYIK 614
            G+    L  + +Y++
Sbjct: 595 SGINLVDLINIKLYLE 610


>gi|269122708|ref|YP_003310885.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
 gi|268616586|gb|ACZ10954.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
          Length = 619

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/617 (38%), Positives = 352/617 (57%), Gaps = 4/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG  TAL T     I  MSCNP+IGG GK HLV E
Sbjct: 1   MNTDYDVIVVGAGHAGVEAALASARLGMKTALFTIFIDNIAMMSCNPSIGGPGKSHLVSE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  L G M R  D+  +Q + LN  KG A R  R QAD+  YR+ M+  I  QENL+V+Q
Sbjct: 61  LGMLGGEMARHIDSYNLQLKNLNHTKGLAARITRAQADKYWYRIKMREIIEKQENLEVVQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V+    +   ++ +  Q         V+L TGTFL+G   IG +K  AGR G+  S  
Sbjct: 121 GIVSDLILDGKKVTGVKDQVGIEYGAKAVILCTGTFLKGRFIIGDVKYEAGRQGEQSSEE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   ++ F+  R +T TP R+D +TI + + E+   +E    FS+ T K  N  +   
Sbjct: 181 LSDRLREYGFEVDRYQTATPPRIDKRTINFSEIEELKGEENPRYFSYYTLKEENSVMPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET R+  E +K+S I +G + S GPR+CPS++ K++RF E+  HQIFLE E   
Sbjct: 241 LTYTTPETIRVASELLKYSPIVTGIVSSKGPRHCPSLDRKVLRFPEKTDHQIFLEQESTE 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EYDYI   +L  TLETK + 
Sbjct: 301 SNEIYINGFTTAMPPFAQDAMLKTIKGLENAKIMRYGYAVEYDYIPANQLKLTLETKVLE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AG INGT+GYEEAA QG +A +N+ RK      +   R++ Y GV+IDD+ +K   
Sbjct: 361 NLYTAGTINGTSGYEEAAVQGFMASVNAVRKIKGQSPVIIDRSEGYTGVLIDDIINKDTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+  SRAEYR++LR DN   RL     ++G + + + +      +E       L+++
Sbjct: 421 EPYRVLPSRAEYRLTLRQDNVFLRLLDKAREIGILDKEKLEELENAKKEIEKELERLRNI 480

Query: 482 -VLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            V  +K  +   IS   D      +A+EFL+  + +   L     +  K S +V E+++I
Sbjct: 481 TVYPTKENNEILISLGHDTMNNPVSAFEFLARKEMTYDGLARFI-ETEKLSKIVKEQVEI 539

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            S Y  +  R+  + ++ K  E+ +IPKD DY  +  +SN     L   +P  + QAS+I
Sbjct: 540 NSKYKIFIDREKNQIEKFKKLEEMIIPKDTDYEKIKGISNIAISGLVYSQPETIGQASRI 599

Query: 599 EGMTPAALNLLLIYIKK 615
            G+T   + LL+ +IK+
Sbjct: 600 SGITHNDMTLLIAFIKE 616


>gi|237738572|ref|ZP_04569053.1| glucose inhibited division protein A [Fusobacterium sp. 2_1_31]
 gi|229424055|gb|EEO39102.1| glucose inhibited division protein A [Fusobacterium sp. 2_1_31]
          Length = 627

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 363/627 (57%), Gaps = 18/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKTENISLIQ 120

Query: 122 GEV-----------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
             V              + EK +I  +  +   +     +VL TGTFL+G I IG +   
Sbjct: 121 DCVEEILVEDIKDRQNLSYEKKVIG-VKTRLGLIYNTKAIVLATGTFLKGKIVIGDVTYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ ET  ++ + +K+S I SG + ++GPR+CPSI+ K++ F E+  
Sbjct: 240 KKEKNNTVPTWLTYTSEETIEVVRDMMKYSPIVSGMVNTHGPRHCPSIDRKVLNFPEKTK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K    + +   R+++YIGV
Sbjct: 360 LYPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEEPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ- 469
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I  
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFNKIKEVGIVDKDKIEFLEKSINN 479

Query: 470 ---EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              E N L+++  S+   +  L S  I  K   K   A E L   D +  +L +   +  
Sbjct: 480 VYTEINNLKNISVSMNDANNFLESLGIEEKF-VKGVKASEILKIKDVNYDDLKAFL-NLN 537

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +   V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +SN  +  L+ 
Sbjct: 538 DYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIDKNINYDDIKGISNIARAGLNE 597

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++P ++ +A++I G+T   + L++ ++
Sbjct: 598 VRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|34763012|ref|ZP_00143988.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887313|gb|EAA24407.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 627

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/631 (38%), Positives = 362/631 (57%), Gaps = 26/631 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   +N+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTQNISLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNS---------------MIRCSTVVLTTGTFLRGVIHIGK 166
                   E+ ++  I    NS               +     +VL TGTFL+G I IG 
Sbjct: 121 D-----CAEEILVEDIKDSQNSSYEKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGD 175

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           +   AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    F
Sbjct: 176 VTYSAGRQGETSAEKLSDSLRELGVKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYF 235

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           S  T K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F 
Sbjct: 236 SLFTKKEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFP 295

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ++  HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY 
Sbjct: 296 DKTKHQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYA 355

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
              +L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++
Sbjct: 356 PASQLYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEA 415

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K
Sbjct: 416 YIGVLIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEK 475

Query: 467 YIQ----EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
            I     E N L+++  S+   ++ L +  I  ++  K   A E L   D S  NL  + 
Sbjct: 476 SINDVYMEINNLKNISVSMNEANRFLENLGIE-ERFVKGVKASEILKIKDVSYDNL-KVF 533

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            +   +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  + 
Sbjct: 534 LNLDDYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARA 593

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            L+ ++P ++ +A++I G+T   + L++ ++
Sbjct: 594 GLNEVRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|294781804|ref|ZP_06747137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481914|gb|EFG29682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
          Length = 627

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/636 (37%), Positives = 360/636 (56%), Gaps = 36/636 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKNENISLIQ 120

Query: 122 GEV-----------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
             V              + EK +I  +  +   +     +VL TGTFL+G I IG +   
Sbjct: 121 DCVEEILVEDIKDRQNLSYEKKVIG-VKTRLGLIYNTKAIVLATGTFLKGKIVIGDITYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ ET  ++ + +K+S I SG + ++GPR+CPSI+ K++ F E+  
Sbjct: 240 KKEKNNTVPTWLTYTSEETIEVVRDMMKYSPIVSGMVNTHGPRHCPSIDRKVLNFPEKAK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K    + +   R+++YIGV
Sbjct: 360 LYPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEEPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + R          
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDR---------- 469

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDG-------------KTRTAYEFLSYPDFSIQN 517
             FL++ + ++     NL + SIS                  K   A E L   D +  +
Sbjct: 470 IEFLKNSINNVYTEINNLKNISISMNDANNFLESLGIEEKFVKGVKASEILKIKDVNYDD 529

Query: 518 LFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
           L +   +   +   V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +S
Sbjct: 530 LKTFL-NLNDYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIDKNINYDDIKGIS 588

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           N  +  L+ ++P ++ +A++I G+T   + L++ ++
Sbjct: 589 NIARAGLNEVRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|254302387|ref|ZP_04969745.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322579|gb|EDK87829.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 628

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/631 (38%), Positives = 361/631 (57%), Gaps = 26/631 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TAL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKTALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYQYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNS---------------MIRCSTVVLTTGTFLRGVIHIGK 166
                   E+ ++  I    NS               +     +VL TGTFL+G I IG 
Sbjct: 121 D-----CAEEILVEDIKDSQNSSYIKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGD 175

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           +   AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    F
Sbjct: 176 ITYSAGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYF 235

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           S  T K  N  +   +T T+ ET  ++ E +++S I SG + ++GPR+CPSI+ K++ F 
Sbjct: 236 SLFTKKEKNNTVPTWLTYTSEETIEVVREMMEYSPIVSGMVNTHGPRHCPSIDRKVLNFP 295

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ++  HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY 
Sbjct: 296 DKAKHQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYA 355

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
              +L+P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K      +   R+++
Sbjct: 356 PASQLYPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEA 415

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL  K   EPYR+  SRAEYR++LR DN   RL     ++G I + + +   K
Sbjct: 416 YIGVLIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNTFMRLFEKIKEVGIIDKDKIEFLEK 475

Query: 467 YIQ----EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
            I     E N L+++  S+   +  L S  +  ++  K   A E L   D S  +L    
Sbjct: 476 SINNVYMEINNLKNISVSMNEANNFLESLGVE-ERFVKGVKASEILKIKDVSYDDLKGFL 534

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            +   +   V  +++    Y  +  R+  + ++ K  E   IP++ DY  +  +SN  + 
Sbjct: 535 -NLNDYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENIDYDEIKGISNIARA 593

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            L  ++P ++ +A++I G+T   + L++ ++
Sbjct: 594 GLDEVRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|237741001|ref|ZP_04571482.1| glucose inhibited division protein A [Fusobacterium sp. 4_1_13]
 gi|229431045|gb|EEO41257.1| glucose inhibited division protein A [Fusobacterium sp. 4_1_13]
          Length = 627

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/631 (38%), Positives = 361/631 (57%), Gaps = 26/631 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNS---------------MIRCSTVVLTTGTFLRGVIHIGK 166
                   E+ ++  I    NS               +     +VL TGTFL+G I IG 
Sbjct: 121 D-----CAEEILVEDIKDSQNSSYVKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGD 175

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           +   AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    F
Sbjct: 176 VTYSAGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYF 235

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           S  T K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F 
Sbjct: 236 SLFTKKEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFP 295

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ++  HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY 
Sbjct: 296 DKAKHQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYA 355

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
              +L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++
Sbjct: 356 PASQLYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEA 415

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K
Sbjct: 416 YIGVLIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEK 475

Query: 467 YIQ----EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
            I     E N L+++  S+   +K L +  I  ++  K   A E L   D S  NL  + 
Sbjct: 476 SISDVYTEINNLKNISVSMNAANKFLENLGIE-ERFVKGVKASEILKIKDVSYDNL-KVF 533

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            +   +   V  +++    Y  +  R+  + ++ K  E   I ++ +Y  +  +SN  K 
Sbjct: 534 LNLDDYEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYILENINYDEIKGISNIAKA 593

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            L+ ++P ++ +A++I G+T   + L++ ++
Sbjct: 594 GLNEVRPLSIGEATRISGVTSNDITLIIAHM 624


>gi|323333595|gb|EGA74988.1| Mto1p [Saccharomyces cerevisiae AWRI796]
          Length = 532

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/518 (42%), Positives = 324/518 (62%), Gaps = 19/518 (3%)

Query: 107 MQREILSQE---NLDVIQGEVAGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
           MQRE+  ++   NL ++Q +VA            +I  +V+ D + +    V++TTGTFL
Sbjct: 1   MQRELSDKKAHPNLYLLQNKVADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFL 60

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
              IHIG  +I AGR+G+ P+  + N+   +  F  GRLKTGTPARL  ++I +   E Q
Sbjct: 61  SAEIHIGDKRIAAGRIGEQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQ 120

Query: 218 FADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
             DE  +P SF+ + ++    +Q++C  T T  + H  +  N+ H +I+  D    GPRY
Sbjct: 121 KGDELPVPMSFLNETVSVEPTKQLDCFGTHTTPQMHDFLRNNL-HQSIHIQDTTIKGPRY 179

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIE KI+RF +R+ H+I+LEPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I
Sbjct: 180 CPSIEAKILRFPDRSSHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEI 239

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS- 393
           ++P Y +EYDY++P++L P+LETK + GLFLAGQINGTTGYEEAAAQG++AGIN+   S 
Sbjct: 240 LQPAYGVEYDYVDPRQLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSR 299

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            + + +   R+ +YIGV+IDDL + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +L
Sbjct: 300 QEREQLVLKRSQAYIGVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQL 359

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD 512
           G I   R  ++++    Y+     L++  L+S+  SS    +     + R+A+E   + D
Sbjct: 360 GIISPVRLSQYSRDKHLYDETIRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKD 419

Query: 513 FSIQNLFSICPDAR----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             +  L+   PD           V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+
Sbjct: 420 MDLHKLYECIPDLPINLLDIPMHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDY 479

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
           DY  LP LS E K  L+ ++P  + QA +I+G+T AAL
Sbjct: 480 DYRQLPTLSTECKLLLNRVQPLTIGQARRIQGITAAAL 517


>gi|323337734|gb|EGA78978.1| Mto1p [Saccharomyces cerevisiae Vin13]
 gi|323348736|gb|EGA82977.1| Mto1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355163|gb|EGA86991.1| Mto1p [Saccharomyces cerevisiae VL3]
          Length = 532

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/518 (41%), Positives = 324/518 (62%), Gaps = 19/518 (3%)

Query: 107 MQREILSQE---NLDVIQGEVAGF-----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
           MQRE+  ++   NL ++Q +VA            +I  +V+ D + +    V++TTGTFL
Sbjct: 1   MQRELSDKKAHPNLSLLQNKVADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFL 60

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
              IHIG  +I AGR+G+ P+  + N+   +  F  GRLKTGTPARL  ++I +   E Q
Sbjct: 61  SAEIHIGDKRIAAGRIGEQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQ 120

Query: 218 FADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
             D+  +P SF+ + ++    +Q++C  T T  + H  +  N+ H +I+  D    GPRY
Sbjct: 121 KGDKLPVPMSFLNETVSVEPTKQLDCFGTHTTPQMHDFLRNNL-HQSIHIQDTTIKGPRY 179

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIE KI+RF +R+ H+I+LEPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I
Sbjct: 180 CPSIEAKILRFPDRSSHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEI 239

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS- 393
           ++P Y +EYDY++P++L P+LETK + GLFLAGQINGTTGYEEAAAQG++AGIN+   S 
Sbjct: 240 LQPAYGVEYDYVDPRQLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSR 299

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            + + +   R+ +YIGV+IDDL + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +L
Sbjct: 300 QEREQLVLKRSQAYIGVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQL 359

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD 512
           G I   R  ++++    Y+     L++  L+S+  SS    +     + R+A+E   + D
Sbjct: 360 GIISPVRLSQYSRDKHLYDETIRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKD 419

Query: 513 FSIQNLFSICPDAR----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             +  L+   PD           V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+
Sbjct: 420 MDLHKLYECIPDLPINLLDIPMHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDY 479

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
           DY  LP LS E K  L+ ++P  + QA +I+G+T AAL
Sbjct: 480 DYRQLPTLSTECKLLLNRVQPLTIGQARRIQGITAAAL 517


>gi|213615933|ref|ZP_03371759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 388

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/388 (52%), Positives = 264/388 (68%), Gaps = 1/388 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP IGG+GKGHLV+E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPTIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IH
Sbjct: 61  RQAVRIALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG      GR GD PS  L     +      RLKTGTP R+D +TI +    +Q  D  +
Sbjct: 121 IGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPM 180

Query: 224 IPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
             FSFM +   + +Q+ C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK+
Sbjct: 181 PVFSFMGNAFQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKV 240

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           +RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIE
Sbjct: 241 MRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIE 300

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
           YD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +
Sbjct: 301 YDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPA 360

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           R+ +Y+GV++DDL + G  EPYRMFTSR
Sbjct: 361 RSQAYLGVLVDDLCTLGTKEPYRMFTSR 388


>gi|82915018|ref|XP_728939.1| glucose inhibited division protein A [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23485627|gb|EAA20504.1| Glucose inhibited division protein A [Plasmodium yoelii yoelii]
          Length = 842

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/571 (42%), Positives = 326/571 (57%), Gaps = 90/571 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGH+GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EID
Sbjct: 44  KKYDVIVIGGGHSGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEID 103

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++  
Sbjct: 104 ALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILENT 163

Query: 124 VAGFNTEKNII--SSIVMQDNS------------MIRCS------TVVLTTGTFLRGVIH 163
           V     E ++    S  M +N               +CS       V+LTTGTFL G+ H
Sbjct: 164 VHSLLIENSMTRNDSTNMDENMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGICH 223

Query: 164 IGKLKIPAGR------------MGDSPS-------------------------------- 179
           IGK K   GR            + D+ S                                
Sbjct: 224 IGKDKYKGGRIKRILGKGKDNQLKDASSIEPSKIKEEMNKNKMQKINYIHNYIENNKNGV 283

Query: 180 --NSLFNSFMK------------FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             NS+F++ ++             +F+  R+KTGTP RL   +I +D  EK+   E+  P
Sbjct: 284 EQNSIFDNLIEESTKNLATQLKENNFEIKRMKTGTPPRLCKNSINFDILEKE-GTEKKHP 342

Query: 226 FSFM---TDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIED 280
           F F    ++KI N + + C  T TN++TH ++++ +     +   D    GPRYCPSI  
Sbjct: 343 FYFSFLNSNKINNNKTLPCYKTYTNIKTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAK 402

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           K+ +F E+  H I+LEPEG N  ++YPNG+S+A P   Q + I +I GLE   I+ P Y 
Sbjct: 403 KVTKFSEKKKHIIWLEPEGFNNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYD 462

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK----- 395
           +EY Y+NPK L  TLETK I+GLFL+GQI GTTGYEEAA QG+VAGIN+A  S K     
Sbjct: 463 VEYFYVNPKCLNYTLETKIINGLFLSGQICGTTGYEEAACQGIVAGINAALNSLKKKNIS 522

Query: 396 -LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
            ++    +R DSYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDNAD RLTP   KLG
Sbjct: 523 SINNFVLTRNDSYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNADIRLTPKAEKLG 582

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
              + R           N + S+ K L L +
Sbjct: 583 IASKERLYILNHKYYSVNKIISIFKKLTLNN 613


>gi|284931678|gb|ADC31616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. F]
          Length = 611

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 349/611 (57%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  + +K  + ++ C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKI+RF  +  HQIFLEPE L  D VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIIRFSNKPRHQIFLEPESLELDTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K +  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLVKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVTKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I + +   + + ++  N L   LK      K 
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKEQIDLYNQNLERKNKLIEFLKD----KKV 480

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 481 GMYTLLRAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IP+D  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRIVNSLKNLESIKIPQDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|237736116|ref|ZP_04566597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421827|gb|EEO36874.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium mortiferum ATCC 9817]
          Length = 615

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 359/617 (58%), Gaps = 6/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  +A+LG  TA+ T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MKKIYDVIVVGGGHAGVEAALASARLGKDTAIFTLYLDTIAMMSCNPSIGGPGKSNLVAE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG+  D   +Q + LN  KGPA R  R QAD+ LYR  M++++   +NL +IQ
Sbjct: 61  MDILGGEMGKHTDEFNLQLKHLNESKGPAARITRGQADKYLYRTEMRKKLEHTDNLHMIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   I  +  +         VVL TGTFL+G I IG +   AGR G+  +  
Sbjct: 121 DCVEQIIVDDGEIKGVRTRLGISYFAKAVVLCTGTFLKGKIVIGDVIYSAGRQGEQSAEK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S         R +T TP RLD ++I + K E+   +E    FS  T+K  N  +   
Sbjct: 181 LSDSLRDHGIHIERYQTATPPRLDRRSIDFSKMEELKGEEHPRYFSIFTNKERNNVVPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T  +  E +K+S I SG I+++GPR+CPS++ K++ F ++  HQIFLE E  +
Sbjct: 241 LTHTTEKTIEVAKEMLKYSPIVSGIIETHGPRHCPSLDRKVLNFPDKTNHQIFLELESAD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG++TA+P   Q   +RTI GLE   I+R GYA+EYDY    +L+P+LE+KKI+
Sbjct: 301 SEEIYVNGLTTAMPPFAQEAMMRTIAGLENAKIMRHGYAVEYDYAPASQLYPSLESKKIA 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QG +AG+N+ARK +  + +   R++ YIGV+IDD+  K   
Sbjct: 361 GLFFAGQINGTSGYEEAACQGFMAGVNAARKLDGKEPVIIDRSEGYIGVLIDDIIHKKTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ----EYNFLRSL 477
           EPYR+  SR+EYR++LR DNA  RL     ++G + + + +     I     E   LR +
Sbjct: 421 EPYRVLPSRSEYRLTLRFDNAFMRLYEKAKEIGLLSKEKLEYLENAINIVNSEIERLREI 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              +V  ++ L     S ++  K     E L   + +  +L  +  +   +   +  +++
Sbjct: 481 SVPMVKANELLEKLG-SNQKFAKGIKIGELLKVKEVTYDSLKDVT-EIGDYPEFIKNQIE 538

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               Y  +  R+  + ++ K  E+  IPKDFD+S++  +SN  +  L  ++P ++ +AS+
Sbjct: 539 TIIKYDIFIQRENEQIEKFKRLEEMRIPKDFDFSTVKGISNIARSGLEEIRPLSIGEASR 598

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+T   + LL+ Y+K
Sbjct: 599 ISGVTGNDIALLIGYLK 615


>gi|290987034|ref|XP_002676228.1| predicted protein [Naegleria gruberi]
 gi|284089829|gb|EFC43484.1| predicted protein [Naegleria gruberi]
          Length = 471

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/477 (47%), Positives = 310/477 (64%), Gaps = 44/477 (9%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           I++GGGH+GCEA   A    A T +ITH   TIG +SCNP++GG+GKG LV+E+DAL GL
Sbjct: 1   IIVGGGHSGCEAVNAALFHNADTLMITHSKDTIGVLSCNPSVGGVGKGILVKEVDALGGL 60

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR---EILSQENLDVIQGEVA 125
           MG+V+D A I + VLN+ KGPAV GPR Q DR +YR  MQ+   E   +  L +I G V 
Sbjct: 61  MGKVSDYAMIHYNVLNLSKGPAVYGPRGQMDRYIYRNTMQKVFNEYTMKHKLKIIDGSVD 120

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMG----DSPSN 180
              T+   I  +++++   I   +VV+TTGTFLRG IHIG +++ P GR+     +    
Sbjct: 121 NLITKNGKIQGVILKNGQKIYAKSVVITTGTFLRGEIHIGTQVRFPGGRISEIGTERTCG 180

Query: 181 SLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----- 234
           SL ++F  +F F+ GR+KTGTP RL   +I WD   +Q + + + PFSF  D+ T     
Sbjct: 181 SLADTFYNEFKFEMGRMKTGTPPRLHRNSINWDILTEQPSTKFIEPFSFEHDENTFYGTR 240

Query: 235 ----NRQIECGITRTNLETHRIIMENIKHSA--IYSGDIKSYGPRYCPSIEDKIVRFGER 288
                  + C  T TN +TH II  N    A  +  G+    GPRYCPSIE K+ RF +R
Sbjct: 241 VPHSQPHMMCYETETNEKTHEIIRSNTDELADEVRFGN----GPRYCPSIEIKVTRFPQR 296

Query: 289 NGHQIFLEPEGLNT--------------DVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
             H+I+LEPEG  T              +V+YPNGIS++LP E Q +F++T+ GL++V +
Sbjct: 297 TSHRIWLEPEGHITNKDEAKKLPYNHYANVIYPNGISSSLPPEKQLEFLKTMKGLDQVEM 356

Query: 335 IRPGYAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS---A 390
           ++PGYA+ YD+++PK E+  TL+T K  GLFLAGQINGTTGYEEAAAQG++AG+N+   A
Sbjct: 357 LQPGYAVAYDFVSPKVEISHTLQTHKCQGLFLAGQINGTTGYEEAAAQGIIAGMNAAIYA 416

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           R  N  +     R+++YIGV+IDDL ++GV EPYR+FTSR+EYR+ LR DNAD RLT
Sbjct: 417 RGDN--EPFILDRSEAYIGVLIDDLVTRGVDEPYRVFTSRSEYRLMLRADNADLRLT 471


>gi|256027560|ref|ZP_05441394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289765519|ref|ZP_06524897.1| glucose inhibited division protein A [Fusobacterium sp. D11]
 gi|289717074|gb|EFD81086.1| glucose inhibited division protein A [Fusobacterium sp. D11]
          Length = 625

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 364/628 (57%), Gaps = 18/628 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  + +LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASTRLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKIENISLIQ 120

Query: 122 G-----------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                       +    + EK +I  I  +   +     +VL TGTFL+G I IG +   
Sbjct: 121 DCAEEILVEDIKDSQNSSYEKKVIG-IKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYS 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 180 AGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFFQLEELKGEEHPRYFSIFT 239

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  
Sbjct: 240 KKEKNNTVPTWLTYTSEKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTK 299

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +
Sbjct: 300 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQ 359

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV
Sbjct: 360 LYPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGV 419

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ- 469
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I  
Sbjct: 420 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKAIND 479

Query: 470 ---EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              E N L+++  S+   +K L S  I  ++  K   A E L   D S  +L +   +  
Sbjct: 480 VYMEINNLKNISVSMNEANKFLESLDIE-ERFVKGVKASEILKIKDVSYDDLKTFL-NLN 537

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +   V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ 
Sbjct: 538 DYEDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNE 597

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           ++P ++ +A++I G+T   + L++ ++K
Sbjct: 598 VRPLSVGEATRISGVTSNDVTLIIAHMK 625


>gi|242222421|ref|XP_002476930.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723757|gb|EED77870.1| predicted protein [Postia placenta Mad-698-R]
          Length = 565

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/493 (44%), Positives = 297/493 (60%), Gaps = 55/493 (11%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   IG +SCNP++GG+GKG L+RE+DALDGL GRVAD AGIQF++LN  KG AV 
Sbjct: 103 LLTQKLDNIGELSCNPSMGGVGKGTLMREVDALDGLCGRVADQAGIQFQILNRSKGAAVW 162

Query: 93  GPRTQADRELYRLAMQREILSQENLDV---------------------IQGEVAGFNTEK 131
           GPR Q DR LY+  MQ  + +  NLD+                       G V G   +K
Sbjct: 163 GPRAQIDRTLYKQHMQAALHNYPNLDIRSASVSDLVFDHDVGSTSAHAQWGTVGGVRLDK 222

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
            I  +       +I+CS VV+ TGTFL G IHIG  + PAGR+ ++PS  L  S     F
Sbjct: 223 GI--NAFSDSGEVIKCSQVVICTGTFLSGEIHIGMKRFPAGRINEAPSVGLSGSLRSAGF 280

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLET 249
             GRL+TGTPARL   +I +   E+Q  D    PFSFM   ++N   QI C +T T   T
Sbjct: 281 QLGRLQTGTPARLYKDSIDFRNLEQQRGDSTPHPFSFMNSSVSNADNQILCYLTYTTPAT 340

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H++I +N+ H +++  + K  GPRYCPS+E K++RF +++ H ++LEPEG +++++YPNG
Sbjct: 341 HQMIRDNL-HQSVHIQETKK-GPRYCPSLEAKVIRFPQKDQHLVWLEPEGYDSELIYPNG 398

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           +S ++PEE+Q    RT+PGLE V + RP Y +EYDY++P+EL PTLETK+I GLFLAGQI
Sbjct: 399 LSCSMPEEVQLMMYRTVPGLENVKLARPAYGVEYDYVDPRELKPTLETKRIKGLFLAGQI 458

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGTTGYEEAAAQG++AGIN+   +                              YRMFTS
Sbjct: 459 NGTTGYEEAAAQGVLAGINAGMSALH----------------------------YRMFTS 490

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS 489
           R+EYR+++R DNAD RLT      G I + R ++F    +E   +  LLKS VL+ +   
Sbjct: 491 RSEYRMTIRSDNADLRLTEKARNAGAITDERWRQFEATREELTRVTDLLKSHVLSPQAWQ 550

Query: 490 STSISFKQDGKTR 502
           +     K DG  R
Sbjct: 551 NMGFDVKSDGHMR 563


>gi|262038132|ref|ZP_06011533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
 gi|261747856|gb|EEY35294.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
          Length = 634

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 358/628 (57%), Gaps = 17/628 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+G GHAG EAA  A++LG  TAL T     I  MSCNP+IGG GK HLV E
Sbjct: 1   MNKNYDVIVVGAGHAGVEAALAASRLGLKTALFTIYLDNIAMMSCNPSIGGPGKSHLVSE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  +  QENLD+IQ
Sbjct: 61  LGMLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYRYRIKMREVLEKQENLDIIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   I  +  +         V+L TGTFL+G   IG +K  AGR G+  S+ 
Sbjct: 121 GIVTDLILENGEIRGVEDKLGVKYGAKAVILCTGTFLKGQFIIGDVKYSAGRQGEPSSDE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   ++ F+  R +T TP R+D +TI + KT++   +E+   FS+ T+K  N  +   
Sbjct: 181 LPDKLAEYGFELDRYQTATPPRIDKRTIDFSKTQELKGEEKPRYFSYETEKEYNPVLPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T     E +K+S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + 
Sbjct: 241 LTFTTEKTIETGKEMLKYSPIVTGIVSTKGPRHCPSLDRKILNFPEKTDHQIFLEQESVE 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EY++I   +L   LETK I 
Sbjct: 301 SNEIYVNGFTTAMPPFAQEAMLKTIAGLENAKIVRYGYAVEYNFIPAYQLNLNLETKVIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AG INGT+GYEEAA QG +AG+N+ARK    + I   R++ YIGV+IDD+ +K   
Sbjct: 361 GLYTAGTINGTSGYEEAACQGFIAGVNAARKILGKEEIVIDRSEGYIGVLIDDIINKKTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+  SRAEYR++LR DN   RL     ++G + + + +   K   + +     LK++
Sbjct: 421 EPYRVLPSRAEYRLTLRQDNIFIRLFEKSKEIGLLRKEKLEELEKAKNQIDQETERLKTI 480

Query: 482 VL-----TSKNLSSTSISFKQDGKTR-----------TAYEFLSYPDFSIQNLFSICPDA 525
            +     T++ L      F Q                +A+EFL+  + +  NL     + 
Sbjct: 481 TVYPTKETNEKLKEIGKIFNQKNNNEEISVNSANSPVSAFEFLARKEITYDNLSKFI-ET 539

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           ++FS +V E+++I + Y  +  R+  + ++ K  E+  IP++ DY  +  LSN     L+
Sbjct: 540 KEFSPIVKEQIEINAKYNVFIEREKTQIEKFKKLEEMKIPENIDYEKIRGLSNIAMSGLT 599

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYI 613
             KP  + QAS+I G+T   + +L+  I
Sbjct: 600 YGKPHTVGQASRISGVTYNDIGILIANI 627


>gi|7109686|gb|AAF36757.1| glucose inhibited division protein A [Mycoplasma gallisepticum]
 gi|28212475|gb|AAO37614.1| glucose inhibited division protein A [Mycoplasma gallisepticum]
          Length = 611

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 350/611 (57%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  + +K  + ++ C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKIVRF  +  HQIFLEPE L    VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIVRFPNKPRHQIFLEPESLELGTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K +  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLVKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVTKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I +++   + + +++ N L   LK      K 
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKKQIDLYNQNLEKKNKLIEFLKD----KKV 480

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 481 GMYTLLRAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IP+D  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRLVNSLKNLESIKIPQDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|46199909|ref|YP_005576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus thermophilus HB27]
 gi|81170586|sp|Q72H88|MNMG_THET2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46197536|gb|AAS81949.1| glucose inhibited division protein A [Thermus thermophilus HB27]
          Length = 597

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 339/588 (57%), Gaps = 20/588 (3%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KGPA
Sbjct: 29  VALVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVALGGLMGRAADAAAIHTRVLNRSKGPA 88

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+  R Q DR+LY L  Q EIL++  ++V++GEVA    E   +  +   D   +    V
Sbjct: 89  VQSLRVQVDRDLYALKAQ-EILAERPVEVLRGEVAALWVEGGRLLGVRTVDGRTLPAKAV 147

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   ++ 
Sbjct: 148 VVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLKAVGHTLRRFKTGTPPRIRADSVD 207

Query: 211 WDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           + + E       + P SF  +   +  ++    TRT   THR+I+EN+  S +Y+GDI+ 
Sbjct: 208 FGRLE--VVPPEVPPGSFTGNPGPHAARLPTWQTRTTERTHRLILENLHLSPLYAGDIQG 265

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  VY  G S++LP E+Q + +R++PG 
Sbjct: 266 IGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTEVYLQGFSSSLPPELQEEMVRSLPGF 325

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E+  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+N+
Sbjct: 326 ERAVIQRYAYAVEYDSLDPTELTRGLQSRFLPGLFSAGQVNGTSGYEEAAAQGLLAGLNA 385

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +  L  +   R   YIGV++DDL  +G  EPYRM TSR E R+  R DNAD RLTP+
Sbjct: 386 ARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLTPL 445

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
            +  G    R ++   +   +Y  + + L+ L    + L    +S           ++L 
Sbjct: 446 AVAWGL---RPREDLERVEAKYRRVAAELRRL----EALRVEGVS---------GLQWLR 489

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
            P+ + + L    P     S     ++++ + YA Y  RQ    ++++  E   IP+  D
Sbjct: 490 RPENTYRALAERFPPPEPLSPEEAYQVEVRAKYAGYIERQERLREKMRDLEAFRIPEGMD 549

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           +  +P LS E  EKLS  +P +L +A++I G+  + L  L +++++  
Sbjct: 550 FPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRDSDLTALAVHLRRGA 597


>gi|260654353|ref|ZP_05859843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jonquetella anthropi E3_33 E1]
 gi|260630986|gb|EEX49180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jonquetella anthropi E3_33 E1]
          Length = 597

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/594 (38%), Positives = 330/594 (55%), Gaps = 12/594 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GAS  L+    S +  M CNP+IGG  KGHLVREI AL G   R ADA+ I  R LN  
Sbjct: 1   MGASVLLVAQDLSRVAFMPCNPSIGGPAKGHLVREISALGGEQARAADASAIMTRWLNTS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AVR  R Q D   Y       +     L+++Q EV G   +   +  +  +    I 
Sbjct: 61  KGAAVRALRCQCDLNDYGRYYFARLTETPGLELLQDEVTGLIYDDWAVLGVRTRFGLEIP 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGT LRG+IH+G +  P+G +G   S  L +   K    T RLKTGTP RL  
Sbjct: 121 AKRVILTTGTHLRGLIHVGLVNYPSGPVGQQASVRLADELAKMGLPTFRLKTGTPPRLHA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
            +I W   E+Q  ++    F F      +++  C + RTN ETHRI+ +++  S I    
Sbjct: 181 DSIDWSVLERQEGEDTPECFDFWGTPAVHKEAFCAVLRTNKETHRIVTDHLDESPIVQRV 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I   GPRYCPSIE K++ F  ++ H +FLEP       +Y    ST+LP  +Q   + ++
Sbjct: 241 ITGVGPRYCPSIESKVIAFPNKDSHPLFLEPVDRLGKEIYVQNFSTSLPASVQWPMVHSL 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           PG  +  I++PGYAIEYD +NP  L P LE K++ GLF AGQINGT+GYEEAAAQGL+AG
Sbjct: 301 PGCGRAKILKPGYAIEYDALNPLGLTPWLERKEVPGLFCAGQINGTSGYEEAAAQGLLAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           IN+       + +   R ++Y+GV++DDL +KG  EPYRM TSR EYR+ LR DNAD RL
Sbjct: 361 INAVLSLRGEEPLVLGRHEAYLGVLVDDLVTKGTDEPYRMLTSRCEYRLLLRHDNADRRL 420

Query: 447 TPIGMKLGCIGERR----QKRFAKYIQEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGK 500
              G+ LG + + +    + R+ +  +E++     L SL LT++ +    T+   +  G+
Sbjct: 421 AAKGVALGLVSQSKWDELRHRWDREDREFDR----LGSLKLTAQQVDGVLTACQSRPTGQ 476

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             TA   L  P+ + Q L ++   A + +    + + +   Y  Y  RQ + A+ +   E
Sbjct: 477 GMTAAALLRRPEVTYQALAAV--GAGELTGDEADAVAVRVKYEGYVKRQELAAQSMLRLE 534

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
              IP+DFD+  L    +E  EKL  ++P  L QAS+I G+TPA L  L + ++
Sbjct: 535 GLEIPQDFDFKLLNGALSESVEKLERVRPRTLGQASRISGVTPADLQHLAMILR 588


>gi|28190317|gb|AAO33051.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/534 (44%), Positives = 318/534 (59%), Gaps = 9/534 (1%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M    D +GIQFR+LN  KGPAVR  R QADR LY   ++R +  Q NL +++
Sbjct: 1   IDALGGIMAEAIDHSGIQFRILNSSKGPAVRSTRAQADRLLYHKNIKRLLQKQSNLLILE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV         +  ++ Q+ +     +VVL TGTFL   IHIG      GR+GD  S  
Sbjct: 61  EEVKDLIFNNYTVKGVLTQNENNFFSKSVVLATGTFLGARIHIGLNSYSFGRIGDKSSID 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L N          RLKTGTP R+D  TI  +    Q +D  +  FSF+ D   + +QI C
Sbjct: 121 LSNRLRDLSLRVNRLKTGTPPRIDINTIDLNDLFVQNSDNPIPVFSFIGDVANHPKQIPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S IY G +K  GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 181 YLTHTNEKTHEIIRNNLDKSPIYQGVLKGLGPRYCPSIEDKVVRFPDKKSHQIFLEPEGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LP +IQ + + +I GLEK  II PGYA+EYD+ +PK+L  TLE+K I
Sbjct: 241 SSLKIYPNGISTSLPLDIQKKLLTSIKGLEKSKIITPGYAVEYDFFDPKDLNLTLESKLI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA+QGL+AG+N+   + +       R  +Y+GV+IDDLT+KG 
Sbjct: 301 KGLFFAGQINGTTGYEEAASQGLLAGLNAGLNAMERQHWFPRRDQAYLGVLIDDLTTKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNFLRS 476
            EPYRMFTSRAEYR+ LR DNAD RLT IG KLG + + R   + + +     E N L++
Sbjct: 361 EEPYRMFTSRAEYRLLLREDNADLRLTEIGRKLGLVNDLRWSHYNEKLSNIKSEINRLQT 420

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIE 534
           L  S +    N  S       + +  +  E L  P+   ++L  +     K  F   VIE
Sbjct: 421 LKISPISPDSNFLSKYYRINLNHEI-SMIELLKRPEIKYKDL-QLLEKFNKGIFDFQVIE 478

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +++ +  Y  Y  RQ+ E       E   +  D DY+++  LS+E+ +KL+  K
Sbjct: 479 QIENQIKYEGYIKRQLEEINRQIKNEHTFLSADCDYNTIKGLSSEVVKKLNYHK 532


>gi|328947709|ref|YP_004365046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema succinifaciens DSM 2489]
 gi|328448033|gb|AEB13749.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema succinifaciens DSM 2489]
          Length = 690

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 278/436 (63%), Gaps = 40/436 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV V GGGHAG EA+   A++G  T LIT    +IG MSCNP+IGG+ KG++VREIDA
Sbjct: 6   SFDVAVCGGGHAGIEASLACARMGLKTILITQSIDSIGRMSCNPSIGGIAKGNIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL------- 117
           L G MGR+ D + IQFR+LN  +GPAV+ PR+QAD+ +Y    +  + + ENL       
Sbjct: 66  LGGEMGRLIDRSMIQFRMLNKSRGPAVQAPRSQADKIVYSSLARHVVETTENLSTLMDTV 125

Query: 118 -DVI-----------------QGEVAG---------FNTE------KNIISSIVMQDNSM 144
            DV+                  G + G         F T+      +  I  +V +   +
Sbjct: 126 VDVLTVASDVPLPKDSSGSLESGSIPGEKRSGSSYTFATQACRSGMRQKIIGVVTERGRI 185

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I C   VLTTGTFL G I IG+   P GR+G+S    L  S  +  F TGRLKTGTP R+
Sbjct: 186 IPCRAAVLTTGTFLGGRIFIGEYDAPCGRLGESGVFGLTESLSRLGFTTGRLKTGTPPRI 245

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
              T+ + + E Q  D+ ++PFSF  +KI    + C +  TN ETH+II ENI  S +YS
Sbjct: 246 LKHTVDFSRFELQEGDKEILPFSFDDEKIERPMVPCHLVYTNEETHKIIRENINRSPLYS 305

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I   GPRYCPSIEDK++RF ERN HQ+F+EPEGL TD +Y NG+S++LPEE+Q  F+R
Sbjct: 306 GKISGVGPRYCPSIEDKVMRFAERNRHQLFVEPEGLETDEIYLNGLSSSLPEEVQDAFLR 365

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           T+PG E   + RPGYA+EYDY+ P +LFP+LETK+++GLF AGQINGT+GYEEAA QGLV
Sbjct: 366 TMPGFENCVVSRPGYAVEYDYVEPTQLFPSLETKRVAGLFNAGQINGTSGYEEAAGQGLV 425

Query: 385 AGINSARKSNKLDCIC 400
           AGIN+A  + +   +C
Sbjct: 426 AGINAALYAREHKKLC 441



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 40/230 (17%)

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G +S  K    + +   R ++YIGV+IDDL + G  EPYRMFT+RAEYR+ LR D AD R
Sbjct: 500 GFDSFEKIPSYEPLVLGRDEAYIGVLIDDLVTLGTKEPYRMFTARAEYRLKLRHDTADRR 559

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           L   G  +G I    + +F +   +Y                            K   A 
Sbjct: 560 LRKKGFVVGLIS---KAQFEQMNLKYQ---------------------------KVDEAL 589

Query: 506 EFLS-YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           EFLS +PD           +   F+SL     Q +  Y  Y  +Q     ++   E   I
Sbjct: 590 EFLSKHPD---------AENPGNFNSLEWTLAQEDFKYRYYIEKQDSRVAKMHRMENARI 640

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P DFDYS + ALS+E + KL  ++P  L QAS+I G+  + + LL++Y++
Sbjct: 641 PADFDYSKIVALSSESRAKLEKIRPLTLGQASRISGIRNSDIMLLMVYLR 690


>gi|222873270|gb|EEF10401.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/408 (52%), Positives = 271/408 (66%), Gaps = 2/408 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGG+GKGHLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPSIGGIGKGHLVKEVDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R A++  + +Q NL + Q  V     E + +     Q     R   VVLT GTFL G IH
Sbjct: 61  RKAIRTRLENQPNLMLFQQAVDDLMVEGDRVVGARTQVGIDFRARAVVLTAGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           +G      GR GD  + SL     +     GRLKTGTP R+DG+TI +   E+Q  D   
Sbjct: 121 VGLDNYTGGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDP 180

Query: 224 IP-FSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           +P FSF+     + +Q+ C IT TN  TH +I   +  S +Y+G I+  GPRYCPSIEDK
Sbjct: 181 VPVFSFLGRPEQHPQQLPCWITHTNSRTHDVIRGGLDRSPMYTGVIEGVGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQIFLEPEGL T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAI
Sbjct: 241 IHRFASKESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDY +P+ L  +LE+K I GLF AGQINGTTGYEEAAAQGL+AGIN+     + D    
Sbjct: 301 EYDYFDPRGLKSSLESKAIEGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTP 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
            R  +Y+GV++DDL ++GV EPYRMFTSRAE+R+SLR DNAD RLT I
Sbjct: 361 RRDQAYLGVLVDDLITRGVTEPYRMFTSRAEFRLSLREDNADMRLTEI 408


>gi|257124823|ref|YP_003162937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia buccalis C-1013-b]
 gi|257048762|gb|ACV37946.1| glucose inhibited division protein A [Leptotrichia buccalis
           C-1013-b]
          Length = 630

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/631 (39%), Positives = 355/631 (56%), Gaps = 23/631 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EAA  AA+ G  TAL T     I  MSCNP++GG GK HLV E+ 
Sbjct: 2   KNYDIIVVGAGHAGVEAALAAARHGLKTALFTIYLDNIAMMSCNPSVGGPGKSHLVSELG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  I  QENLD++QG 
Sbjct: 62  MLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYWYRIKMREIIEKQENLDLVQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V     E   +  +  +DN  I+     VVL TGTFL G   +G +K  +GR G+  S  
Sbjct: 122 VVDLIVENKKVMGV--EDNLGIKYGAKAVVLCTGTFLDGEYVMGDVKYSSGRQGEPASVD 179

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +  +++ F+  R +T TP R+D  +I + KTE+   +++   FS+ T K  N  +   
Sbjct: 180 LPDRLVEYGFELDRYQTATPPRIDKSSIDFSKTEELKGEDKPRYFSYETKKEYNSTLPTW 239

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET R+  E +K+S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + 
Sbjct: 240 LTFTTPETIRVGQEMLKYSPIVTGIVSTKGPRHCPSLDRKIMNFPEKTNHQIFLEQESVE 299

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +D +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EY+++   +L  TLETK + 
Sbjct: 300 SDEIYINGFTTAMPPFAQEAMLKTISGLENAKIVRYGYAVEYNFVPAYQLKLTLETKVLD 359

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AG INGT+GYEEAA QG +AG+N+ARK      I   R++ YIGV+IDD+ +K   
Sbjct: 360 GLYTAGTINGTSGYEEAACQGFMAGVNAARKILGKKEIVIDRSEGYIGVLIDDIINKKTP 419

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS- 480
           EPYR+  SRAEYR++LR DN   RL     ++G +   +        QE       LKS 
Sbjct: 420 EPYRVLPSRAEYRLTLRQDNIFIRLLEKAKEIGLLNAEKLTELENTCQEIENEIERLKSI 479

Query: 481 ------------LVLTSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICP 523
                       L +  K   S S   ++  K       +A+EFL+  + +  NL     
Sbjct: 480 TVYPTKENNEKLLEIVEKQNQSESAEIEKTSKNSMNSPVSAFEFLARKEINYNNLSEFVK 539

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
              K S L  E+++I + Y  +  R+  + ++ K  EK +IPKDFDY S+  LSN     
Sbjct: 540 TV-KLSDLAKEQVEINAKYNVFIEREKAQIEKFKKLEKMIIPKDFDYESVKGLSNIAISG 598

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L   +P  + QAS+I G+T   ++LL+  +K
Sbjct: 599 LIYGQPETIGQASRISGVTYNDISLLIAILK 629


>gi|325284180|ref|YP_004256721.1| glucose inhibited division protein A [Deinococcus proteolyticus
           MRP]
 gi|324315989|gb|ADY27104.1| glucose inhibited division protein A [Deinococcus proteolyticus
           MRP]
          Length = 606

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/623 (39%), Positives = 354/623 (56%), Gaps = 36/623 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M NR ++VIVIGGGHAG EAA  AAK G + A++    +TIG M CNP++GG GK  LV 
Sbjct: 1   MKNR-WNVIVIGGGHAGIEAAWAAAKFGRA-AMLVGNPATIGRMPCNPSVGGPGKSQLVF 58

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+ AL GLM  +AD   I  RVLN  KGPAV+  R Q +R+LY    Q  +LS   LD++
Sbjct: 59  ELQALGGLMPTLADQTAIHTRVLNASKGPAVQSLRVQNERDLYATVAQDALLSVPELDIL 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE A   ++      +V  D       +VV+  GTF+RGV   G+     GR G+ PS 
Sbjct: 119 RGEAADLESDGQGGWWVVTTDGRRFWGRSVVVAAGTFMRGVTWYGRQSRHEGRQGEPPSR 178

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----- 235
            L  +  +      R KTGTP R+   ++       +F D  +IP        T      
Sbjct: 179 YLSAALEQGGHTLKRFKTGTPPRVRADSV-------RFGDLTVIPADQPARSFTGTPGPH 231

Query: 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                   T T   THR++ ENI HSA+Y+GDI + G RYCPSIEDKI+RF   + H +F
Sbjct: 232 AEASPTWQTHTTPLTHRLVAENIGHSAMYAGDIDALGARYCPSIEDKIMRFAHHDRHLLF 291

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +EPEGL T  VY  G S++LP E+Q   +RT+PG E+  I R  YA+EYD ++  EL   
Sbjct: 292 VEPEGLETSEVYLQGFSSSLPPELQDVLVRTLPGFEQAVIQRYAYAVEYDVVDSTELTMN 351

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LE++++ G++ AGQ+NGT+GYEEAA QGLVAG  +AR++  L    FSR D Y+GV++DD
Sbjct: 352 LESRRLPGVYTAGQLNGTSGYEEAAMQGLVAGTAAARRAAGLSEETFSRADGYLGVLLDD 411

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L  KG  EP+RM TSR E+R+ +R DNAD RLTP+  +LG +G   Q +      +Y  +
Sbjct: 412 LMLKGCDEPFRMMTSRVEHRLLVRQDNADERLTPLAQRLGLVG---QVQLDAVQAKYRRV 468

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            + +++L              + DGK    +  L  P+ S+ +L +      + S    E
Sbjct: 469 EAGMQALARQ-----------RLDGKPAEVH--LRRPEVSLVDLEAQGVQLPELSREEKE 515

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEK--RLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            ++I   YA Y  R     +++  E K  RL     D++++P+LS E +EKL    P  +
Sbjct: 516 AVEIRVKYAGYLDRAR---RQLDAEAKAGRLSLSGVDFAAVPSLSLEGREKLLRHAPTTV 572

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I+G+  A ++ LL+++K+
Sbjct: 573 EQASRIQGVRHADISALLVHLKQ 595


>gi|84996187|ref|XP_952815.1| glucose-inhibited division protein a-like protein [Theileria
           annulata strain Ankara]
 gi|65303813|emb|CAI76190.1| glucose-inhibited division protein a-like protein, putative
           [Theileria annulata]
          Length = 745

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/491 (45%), Positives = 305/491 (62%), Gaps = 33/491 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGGH+G EAA  AA++GA+T LIT   S+IG +SCNP+IGG+GKG+LV EIDAL
Sbjct: 33  FDVLVVGGGHSGIEAATAAARVGANTLLITPDLSSIGELSCNPSIGGIGKGNLVCEIDAL 92

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+MG  AD + I FR LN  KGPAV GPR Q DR+LY++ +++ + +  NL  +Q  V 
Sbjct: 93  DGIMGMCADLSAISFRCLNTSKGPAVVGPRVQIDRDLYKINIRKLLENYNNLSFLQALVD 152

Query: 126 GF-----NTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                  NT +N                 +  I ++D  +I   TV+LTTGTFL+G  HI
Sbjct: 153 ELILDYSNTSENNNSLEINNIVDVKDQVSVKGIKLKDGQIINSKTVILTTGTFLKGRCHI 212

Query: 165 GKLKIPAGRMG------DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
            K     GR+       +  S++L N F K    T R KTGTPARLD K+I +++ E Q 
Sbjct: 213 SKETHKGGRINRISGKFEPSSDNLSNVFSKLGIKTLRFKTGTPARLDRKSINYEELEVQK 272

Query: 219 ADERLIPFSFMTD--KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           +DE    FS++ +  K+ N  I C  T+TN   H I+  N+ +   Y+  +   GPRYCP
Sbjct: 273 SDENPKFFSYLNEDFKVENELINCYKTQTNEVVHNIVRNNLHNLPDYTSGL---GPRYCP 329

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SI  K+ +      H ++LEPEG+N+D++YPNG+S +   E Q + ++ I GLE V ++ 
Sbjct: 330 SISTKVTKHPSIKSHIVWLEPEGINSDIIYPNGLSGSFDIEAQLEILKNIKGLENVKVLT 389

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           P Y +EYD I+P  L  TLE KKI  +FLAGQI GTTGYEEA + G++AGINS+ KS  +
Sbjct: 390 PAYDVEYDLIDPTNLKYTLELKKIKNMFLAGQICGTTGYEEAGSLGIIAGINSSLKSLNV 449

Query: 397 D-CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
           D     +R + YIGV+IDDL  KG+ EPYRMFTSR+EYR+  R DN D R+   G+K G 
Sbjct: 450 DEEFIINRNEGYIGVLIDDLIRKGISEPYRMFTSRSEYRLQNRIDNGDVRMLIKGIKYGV 509

Query: 456 IGERRQKRFAK 466
           I  R++    K
Sbjct: 510 IKNRKRLELMK 520


>gi|320451555|ref|YP_004203651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus scotoductus SA-01]
 gi|320151724|gb|ADW23102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus scotoductus SA-01]
          Length = 597

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/585 (38%), Positives = 332/585 (56%), Gaps = 20/585 (3%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADA  I  RVLN  KGPA
Sbjct: 28  VALVTINPERIGMMPCNPAVGGPGKSQLVAELTALGGLMGRAADATAIHTRVLNRSKGPA 87

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+  R Q DR+LY L  Q EIL++  ++VI+GEV     E   +  +   D   I    V
Sbjct: 88  VQSLRVQVDRDLYALKAQ-EILAERPVEVIRGEVVSLFVEGGRLLGVRTVDGREIPAKAV 146

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   ++ 
Sbjct: 147 VVAGGTFLGGVVWYGRRSRPAGRQGEPPARFLSRSLEAVGHTLRRFKTGTPPRIRADSV- 205

Query: 211 WDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            D +E       + P SF      +  ++    TRT   THR+I+EN+  S +Y+GDI  
Sbjct: 206 -DFSELLVVPPEVPPGSFTGSPGPHAAKLPTWQTRTTSRTHRLILENLHLSPLYAGDIVG 264

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF +++ H +F+EP+GL T  VY  G S++LP E+Q   ++++PG 
Sbjct: 265 IGPRYCPSIEDKVVRFSDKDSHLLFVEPDGLATSEVYLQGFSSSLPPELQEDMVKSLPGF 324

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            +  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+N+
Sbjct: 325 GRAVIQRYAYAVEYDSLDPTELTRGLQSRFLPGLFAAGQVNGTSGYEEAAAQGLLAGLNA 384

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +  L  +   R   YIGVM+DDL  +G  EPYRM TSR E R+  R DNAD RL P+
Sbjct: 385 ARYALGLSEVHLPRESGYIGVMVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLVPL 444

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
            ++ G    R ++      ++Y  + + L+ L            + + DG   +   +L 
Sbjct: 445 AVEWGL---RPREDLEAMREKYRRVEAELRRLE-----------ALRVDGV--SGLVWLR 488

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
            P+ +   L    P     S     ++++ + YA Y  RQ    ++++  E   IP+  +
Sbjct: 489 RPENTYGALAERFPPPVPLSPEEAYQVEVRAKYAGYIERQEQLREKLRDLEGFRIPEGLE 548

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +  +P LS E  EKLS ++P  + +A+++ G+  + L  LL++++
Sbjct: 549 FPRIPGLSREAVEKLSRVRPRTVAEAARVPGIRDSDLTALLVHLR 593


>gi|205831542|sp|Q1IVV5|MNMG_DEIGD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 602

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/621 (39%), Positives = 352/621 (56%), Gaps = 35/621 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R ++V+VIGGGHAG EAA  AAK  A  A++    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 2   RGWNVMVIGGGHAGLEAAWAAAKF-ARVAVLVSNPATVGRMPCNPAVGGPGKSQLVFEVQ 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L    +DV++GE
Sbjct: 61  ALGGLMGRLADDTAIHTRVLNASKGPAVQSLRVQNERDAYAERAQEILLGHSGIDVVRGE 120

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D       +VV+  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 121 AADLEPDGCGGWFVVTTDGRRFHARSVVVAAGTFMRGVTWYGRYSRPEGRQGEPPSRFLS 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR------Q 237
               +      R KTGTP R+   ++       +FAD   IP        T R      +
Sbjct: 181 APLARAGHRLKRYKTGTPPRVRADSV-------RFADLLEIPADPQPRGFTGRPGPRAAE 233

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
                T T  ETHR+I EN+  S +Y+GDI   GPRYCPSIEDK+VRF   + H +F+EP
Sbjct: 234 SPTWQTHTTPETHRLIQENLHESPMYAGDIAGLGPRYCPSIEDKVVRFAHHDRHLLFVEP 293

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           +G+ T  VY  G S++LP  +Q + +R++PG E   I R  YA+EYD ++  EL   LE+
Sbjct: 294 DGVQTSEVYLQGFSSSLPPALQDRLVRSLPGFEAAVIQRYAYAVEYDVVDSTELTLNLES 353

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           + + G+F AGQINGT+GYEEAAAQGLVAG  +AR++ +L+ +  SR  SY+GV++DDL  
Sbjct: 354 RLLPGIFTAGQINGTSGYEEAAAQGLVAGTAAARRALELEELQISRETSYLGVLLDDLVL 413

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRS 476
           KG  EPYRM TSR E+R+ +R DNAD RLT +G+KLG + E  Q+   AKY +    +R+
Sbjct: 414 KGSDEPYRMMTSRVEHRLIVRQDNADERLTELGVKLGLVDEDTQRAVQAKYRRVAEGIRA 473

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           L    V                G+T  A+  L  P+F+++++ ++       S    E +
Sbjct: 474 LQMQRV---------------QGQTGDAW--LRRPEFALEDVEALGFKLPALSPEEREAV 516

Query: 537 QIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            I   YA Y  R   + A E +  E  L  +   +  + +LSNE +EKL  ++P  + QA
Sbjct: 517 AIRVKYAGYIERAERQLAAEDRARELSL--RGVAFGEIASLSNEAREKLERVRPLTVAQA 574

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           + I G+  A ++ LL+++++ 
Sbjct: 575 AGIPGVRHADISALLVHLRRT 595


>gi|94986434|ref|YP_605798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus geothermalis DSM 11300]
 gi|94556715|gb|ABF46629.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme, GidA [Deinococcus geothermalis DSM
           11300]
          Length = 614

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/621 (39%), Positives = 352/621 (56%), Gaps = 35/621 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R ++V+VIGGGHAG EAA  AAK  A  A++    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 14  RGWNVMVIGGGHAGLEAAWAAAKF-ARVAVLVSNPATVGRMPCNPAVGGPGKSQLVFEVQ 72

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L    +DV++GE
Sbjct: 73  ALGGLMGRLADDTAIHTRVLNASKGPAVQSLRVQNERDAYAERAQEILLGHSGIDVVRGE 132

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D       +VV+  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 133 AADLEPDGCGGWFVVTTDGRRFHARSVVVAAGTFMRGVTWYGRYSRPEGRQGEPPSRFLS 192

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR------Q 237
               +      R KTGTP R+   ++       +FAD   IP        T R      +
Sbjct: 193 APLARAGHRLKRYKTGTPPRVRADSV-------RFADLLEIPADPQPRGFTGRPGPRAAE 245

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
                T T  ETHR+I EN+  S +Y+GDI   GPRYCPSIEDK+VRF   + H +F+EP
Sbjct: 246 SPTWQTHTTPETHRLIQENLHESPMYAGDIAGLGPRYCPSIEDKVVRFAHHDRHLLFVEP 305

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           +G+ T  VY  G S++LP  +Q + +R++PG E   I R  YA+EYD ++  EL   LE+
Sbjct: 306 DGVQTSEVYLQGFSSSLPPALQDRLVRSLPGFEAAVIQRYAYAVEYDVVDSTELTLNLES 365

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           + + G+F AGQINGT+GYEEAAAQGLVAG  +AR++ +L+ +  SR  SY+GV++DDL  
Sbjct: 366 RLLPGIFTAGQINGTSGYEEAAAQGLVAGTAAARRALELEELQISRETSYLGVLLDDLVL 425

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF-AKYIQEYNFLRS 476
           KG  EPYRM TSR E+R+ +R DNAD RLT +G+KLG + E  Q+   AKY +    +R+
Sbjct: 426 KGSDEPYRMMTSRVEHRLIVRQDNADERLTELGVKLGLVDEDTQRAVQAKYRRVAEGIRA 485

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           L    V                G+T  A+  L  P+F+++++ ++       S    E +
Sbjct: 486 LQMQRV---------------QGQTGDAW--LRRPEFALEDVEALGFKLPALSPEEREAV 528

Query: 537 QIESSYAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            I   YA Y  R   + A E +  E  L  +   +  + +LSNE +EKL  ++P  + QA
Sbjct: 529 AIRVKYAGYIERAERQLAAEDRARELSL--RGVAFGEIASLSNEAREKLERVRPLTVAQA 586

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           + I G+  A ++ LL+++++ 
Sbjct: 587 AGIPGVRHADISALLVHLRRT 607


>gi|13508296|ref|NP_110246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pneumoniae M129]
 gi|2494735|sp|P75221|MNMG_MYCPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1673956|gb|AAB95933.1| NADH-binding oxidoreductase GidA [Mycoplasma pneumoniae M129]
 gi|301633329|gb|ADK86883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pneumoniae FH]
          Length = 612

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 340/600 (56%), Gaps = 8/600 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+ + VIGGGHAG EAA +A+KLG    L+    + +GS  CNPAIGG  KG + REID 
Sbjct: 2   SFTLTVIGGGHAGLEAAFIASKLGLKVNLLVLDPNHVGSCPCNPAIGGPAKGIVTREIDV 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ ADA  +Q+++LN  KGPAV+  R Q D+  Y+   +++I    N+++I GE 
Sbjct: 62  LGGMQGKAADATALQYKLLNSSKGPAVQAIRAQIDKIAYQKWFRQQIDQTPNIELIAGEA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +V+ D S +    V++TTGT+L+   + G L    G      S  L  
Sbjct: 122 VDILESNGKVKGVVLADGSELASDAVIVTTGTYLKAKTYCGSLSKEEGPDRAKRSEYLST 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           + +K  F T RLKTGTP R+  +++ + +   +      + FSF T       +Q+ C +
Sbjct: 182 NLIKRGFKTLRLKTGTPPRILRESLDFSQMAVEANTTPHLAFSFTTKNYLPLEQQVICHL 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN + H++I+ N+K SA+++G IK+ GP YCPSIEDK+ RF ++  HQIF+EPE L+ 
Sbjct: 242 IHTNPQIHQLILANLKQSAVFNGSIKANGPLYCPSIEDKVFRFQDKERHQIFVEPESLSL 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G ST+ P E+Q   +R +PG +     + GYAIEYD  +  +L  TLETK I  
Sbjct: 302 ETVYLAGFSTSFPPEVQEHIVRLLPGFKNARFQKYGYAIEYDAFSSIQLKSTLETKLIQN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A K  +       R ++Y+GVMI+DL +K + +
Sbjct: 362 LYFAGQINGTSGYEEAAGQGLIAGINAALKLQRKPEFVLQRNEAYLGVMINDLVTKEISD 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAE+R+ LR DN   RL      LG +       +A Y+++    + L+  L 
Sbjct: 422 PYRLLTSRAEHRLWLRNDNLQERLIEKSRALGLV---EADVYANYLEQQQKKKQLIDYLQ 478

Query: 483 LTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            T+   +++  ++FK     +T ++F    +  + +L  + P         + ++ I+  
Sbjct: 479 TTTVGQIAALKLNFKNTA--QTLFDFTKRAEIKLVDLVQLLPKRFDLDVQSLNQIDIDIK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +     K +       IP   +Y  +P L++E   KLS ++P +L  AS++ G+
Sbjct: 537 YAGYIKKSEKYFKSLNNLSSVKIPLKLNYHKVPNLASEAIVKLSKIRPTDLSVASQVAGI 596


>gi|213579759|ref|ZP_03361585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 473

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/465 (44%), Positives = 293/465 (63%), Gaps = 5/465 (1%)

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           FL G IHIG      GR GD PS  L     +      RLKTGTP R+D +TI +    +
Sbjct: 2   FLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQ 61

Query: 217 QFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           Q  D  +  FSFM +   + +Q+ C IT TN +TH +I  N+  S +Y+G I+  GPRYC
Sbjct: 62  QHGDNPMPVFSFMGNAFQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYC 121

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+
Sbjct: 122 PSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIV 181

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S  
Sbjct: 182 RPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSAD 241

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            +    +R+ +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG 
Sbjct: 242 KEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGL 301

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPD 512
           + + R  RF + ++     R  LKS  +T    S+  ++        +  +  + L  P+
Sbjct: 302 VDDERWARFNEKLENIERERQRLKSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPE 361

Query: 513 FSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
            +   L S+   A         E+++I+  Y  Y  RQ  E ++    E  L+P   DY 
Sbjct: 362 MTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYR 421

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK 
Sbjct: 422 QVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQ 466


>gi|313681129|ref|YP_004058868.1| glucose inhibited division protein a [Oceanithermus profundus DSM
           14977]
 gi|313153844|gb|ADR37695.1| glucose inhibited division protein A [Oceanithermus profundus DSM
           14977]
          Length = 607

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/585 (39%), Positives = 331/585 (56%), Gaps = 18/585 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T   + IG M CNPA+GG GK  LV EI+AL G MGR+ADAA I  RVLN  KGPAVR
Sbjct: 35  LVTGDPARIGLMPCNPAVGGPGKSQLVHEIEALGGWMGRLADAAAIHTRVLNRSKGPAVR 94

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R Q DR+ Y  A +  + ++ N+ V++GE  G   E   ++ +   D  ++     VL
Sbjct: 95  SLRVQTDRDAYAAAARAALAAEANVAVVRGEAVGLVREGGRLAGVRTADGRVLAAPAAVL 154

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
             GTFLRG I  G    PAGR G+ P+  L  +       T RLKTGTP R+  ++I + 
Sbjct: 155 AAGTFLRGRIWYGLQSRPAGRQGEPPARHLSAALEALGHRTLRLKTGTPPRILRRSIDFA 214

Query: 213 KTEKQFADERLIPFSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
             E+   D+   P SF      +   +    TRT+  THR+I++++  S +Y+G +++ G
Sbjct: 215 ALEEVPPDD--PPGSFSGRPGPHAAALPTWTTRTHPGTHRLILDHLDASPLYAGAVQAVG 272

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRF +++ H +F+EP+GL T  VY  G S++LP  +Q + +RT+PG E+
Sbjct: 273 PRYCPSIEDKVVRFADKDSHLLFVEPDGLETSEVYLQGFSSSLPPAVQERMVRTLPGFER 332

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             I R  YA+EYD  +P +L P L ++ + GLFLAGQ+NGT+GYEEAAAQGLVAG+N+AR
Sbjct: 333 AVIQRYAYAVEYDAFDPTDLSPGLMSRHLPGLFLAGQVNGTSGYEEAAAQGLVAGLNAAR 392

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +   D +     ++YIGV+IDDL ++GV EPYRM TSR   R+ LR DNAD RL P   
Sbjct: 393 FAAGEDAVVLGPDEAYIGVLIDDLVTRGVDEPYRMMTSRVALRLLLRGDNADERLVP--- 449

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
           K    G R      +   +Y  +R+ L+ L       +  S+  ++ G T          
Sbjct: 450 KAAAWGLRPAADAERVTAKYARVRAELERLGRARIEGAPASVWLRRPGATLA-------- 501

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
               +      P     S    E+++I + YA Y  RQ  +           IP + DY 
Sbjct: 502 ----EAWHRAGPPPAPLSREEAEQVEIRAKYAGYIERQERQRSRTGELAAYPIPPELDYR 557

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++  LS E  EKLS  +P NL +A++I G+  + +  LL+++ + 
Sbjct: 558 TVHNLSREAIEKLSRRRPANLAEAARIPGLRDSEITALLVHLARR 602


>gi|121591763|ref|ZP_01678970.1| glucose-inhibited division protein A [Vibrio cholerae 2740-80]
 gi|121546375|gb|EAX56630.1| glucose-inhibited division protein A [Vibrio cholerae 2740-80]
          Length = 498

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/498 (43%), Positives = 293/498 (58%), Gaps = 15/498 (3%)

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + Q  V
Sbjct: 1   MGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLFQQAV 60

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +V Q         VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 61  DDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSIALAH 120

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI C IT
Sbjct: 121 RLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIPCYIT 180

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL T 
Sbjct: 181 HTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGLTTT 240

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 241 ELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKYIHGL 300

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EP
Sbjct: 301 FFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEP 360

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+   +
Sbjct: 361 YRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQETWM 420

Query: 484 TSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIE 534
              +        L  T +S +  G+     + L  P+ + + L ++   A         E
Sbjct: 421 NPNSVGVEQLNTLLKTPMSREASGE-----DLLRRPEMTYELLTTLPAFAPALEDAEAAE 475

Query: 535 RLQIESSYAAYTGRQMIE 552
           +++I+  Y  Y  RQ  E
Sbjct: 476 QVEIQVKYDGYIQRQQDE 493


>gi|297625197|ref|YP_003706631.1| glucose inhibited division protein A [Truepera radiovictrix DSM
           17093]
 gi|297166377|gb|ADI16088.1| glucose inhibited division protein A [Truepera radiovictrix DSM
           17093]
          Length = 606

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/615 (39%), Positives = 339/615 (55%), Gaps = 25/615 (4%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +V+GGGHAG EAA  AA+LGA  AL       IG M CNPAIGG GK  LV E+ AL G+
Sbjct: 1   MVVGGGHAGIEAAHAAARLGARVALTLPNPDKIGLMPCNPAIGGPGKSQLVFEVHALGGV 60

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF- 127
           MGR+ADA  I  R LN  KGPAV+  R Q +R+ Y  A +  + +   +++++GE+A   
Sbjct: 61  MGRLADATAIHARTLNASKGPAVQSLRVQNERDDYAAAARALVEATPGIEIVRGEIAELL 120

Query: 128 ---NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  + + D  ++R  +VVL TGTFL GV+  GK + PAGR G++P+  L  
Sbjct: 121 VTATGNAPQLRGVRLTDGRVLRAPSVVLCTGTFLAGVVWYGKQQRPAGRQGEAPARHLSR 180

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S         R KTGTP R+   ++ +   E   AD+    FS              +T 
Sbjct: 181 SLRATGHALLRFKTGTPPRIRADSVDFGVLEVVPADDPPGSFSGSPGPRATSS-PTWLTH 239

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH +I  N+ HSA+Y G+I+  GPRYCPSIEDK+VRF ++  H +F+EP+G  T  
Sbjct: 240 TTPETHALIQANLAHSAMYGGEIEGRGPRYCPSIEDKVVRFADKERHLLFVEPDGAGTSE 299

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G S+++P  +Q + IRT+PG E+  I R  YA+EYD ++P +L  TL +K++ GLF
Sbjct: 300 VYLQGFSSSMPPALQDEMIRTLPGFERAVIQRYAYAVEYDALDPTQLDTTLMSKRLPGLF 359

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAG+N+AR +     +   R + YIGV++DDL   G+ EPY
Sbjct: 360 SAGQINGTSGYEEAAAQGLVAGVNAARFAAGQRPVSVRRDEGYIGVLLDDLVRWGIDEPY 419

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR EYR+  R DNAD RL P+G   G             +++   LR+L +S    
Sbjct: 420 RMLTSRNEYRLLHRQDNADERLLPLGHAWG-------------LRDDAALRALRRSEAAV 466

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIESSYA 543
           +  L     + + DG    A   L  P      L   + P     S     +++I + YA
Sbjct: 467 AAELERLRRT-RIDGV--PADRVLCRPGMHYAALLERLGPPTPPLSPEEARKVEILTKYA 523

Query: 544 AYTGRQMIEAK-EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           AY  R   E +    +E   L   DF    + +LS E  E L   +P  L  A ++ G+ 
Sbjct: 524 AYIERSRRELQARAAYETLDLTRTDF--RRVGSLSAEGLEVLLRERPATLGAAGRLRGVR 581

Query: 603 PAALNLLLIYIKKNT 617
            + L  LL++ ++ +
Sbjct: 582 DSDLTALLVHCRRRS 596


>gi|218662616|ref|ZP_03518546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli IE4771]
          Length = 299

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/295 (65%), Positives = 228/295 (77%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 5   MTGNVYDVIVIGGGHAGTEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR LYRLAM   I +   LD++
Sbjct: 65  EIDAMDGLMGRVADLAGIQFRMLNRKKGAAVRGPRTQADRMLYRLAMLAAIEATPGLDIV 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 125 EGDAFDLDVVDNRVAGVIMKDGRRLKAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 185 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEDLVPFSFMTDSITTRQIEC 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FL
Sbjct: 245 GVTRTTEATHRIIVDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFL 299


>gi|325916837|ref|ZP_08179088.1| glucose-inhibited division protein A [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536988|gb|EGD08733.1| glucose-inhibited division protein A [Xanthomonas vesicatoria ATCC
           35937]
          Length = 477

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/475 (43%), Positives = 297/475 (62%), Gaps = 15/475 (3%)

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT GTFL G IH+G+ +  AGRMGD P+ +L     +  F   RLKTGTP R+DG+++ 
Sbjct: 1   MLTAGTFLAGKIHVGETQYAAGRMGDPPATTLAARLRERPFAIDRLKTGTPPRIDGRSLD 60

Query: 211 WDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +    +Q  D+ L   SFM     + RQ+ C IT+T  +TH II   +  S +YSG I+ 
Sbjct: 61  YGVMVEQPGDDPLPVMSFMGQVGDHPRQVSCWITQTTEQTHDIIRNALHRSPLYSGQIEG 120

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF E+  HQIF+EPEGL    +YPNGIST+LP ++Q   +R+I G 
Sbjct: 121 IGPRYCPSIEDKVVRFAEKTSHQIFVEPEGLEVTEIYPNGISTSLPFDVQLALVRSIHGF 180

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            + +I RPGYAIEYD+ +P+ L  +LETK + GLF AGQINGTTGYEEAAAQGL+AG+N+
Sbjct: 181 AQAHITRPGYAIEYDFFDPRGLKASLETKAVGGLFFAGQINGTTGYEEAAAQGLLAGLNA 240

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR    L      R ++Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +
Sbjct: 241 ARHVQGLPAWSPRRDEAYLGVLVDDLITHGTTEPYRMFTSRAEYRLQLREDNADARLTGV 300

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN------LSSTSISFKQDGKTRT 503
           G  +G + + R  RF+   ++     + L +L  T  N        +  +S  ++     
Sbjct: 301 GRAMGLVDDLRWARFSAKQEQVQRETTRLSALWATPGNALGREVTQTLGVSLSRETNV-- 358

Query: 504 AYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             + +  P+ +   L    ++ P      + V E+++I   YA Y  RQ  +    + +E
Sbjct: 359 -LDLIKRPELNYAALMRVPTLGPGVD--DTQVAEQVEISVKYAGYLDRQRDDIARQQRQE 415

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
              IP+ FDY+++  LS E+++KL  ++P ++ QA +I GMTPAA++LLL+++++
Sbjct: 416 TTPIPEGFDYANVRGLSIEVQQKLERVRPQHIGQAQRIPGMTPAAISLLLVHLER 470


>gi|289668143|ref|ZP_06489218.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 477

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/475 (43%), Positives = 291/475 (61%), Gaps = 15/475 (3%)

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT GTFL G IH+G+ +  AGRMGD P+ +L     +  F   RLKTGTP R+DG+T+ 
Sbjct: 1   MLTAGTFLAGKIHVGETQYAAGRMGDPPATTLAARLRERPFAIDRLKTGTPPRIDGRTLD 60

Query: 211 WDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +    +Q  D+ L   SFM     + RQ+ C IT+T  +TH II   +  S +YSG I+ 
Sbjct: 61  YSVMVEQPGDDPLPVMSFMGQVSDHPRQVSCWITQTTEQTHEIIRNALHRSPLYSGQIEG 120

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF E+  HQIF+EPEGL    +YPNGIST+LP ++Q   +R+I G 
Sbjct: 121 IGPRYCPSIEDKVVRFAEKTSHQIFVEPEGLEVAEIYPNGISTSLPFDVQLALVRSIHGF 180

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            +  I RPGYAIEYD+ +P+ L  +LETK + GLF AGQINGTTGYEEAAAQGL+AG+N+
Sbjct: 181 AQAYITRPGYAIEYDFFDPRGLKASLETKAVGGLFFAGQINGTTGYEEAAAQGLLAGLNA 240

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR    L      R ++Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +
Sbjct: 241 ARHVQGLPAWSPRRDEAYLGVLVDDLITHGTTEPYRMFTSRAEYRLQLREDNADARLTGV 300

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD---GKTRTAYE 506
           G ++G + + R  RF+   +      + L +L  T  N     ++        +     +
Sbjct: 301 GHEMGLVDDARWARFSAKQEAVQRETARLSTLWATPGNALGREVADALGVTVSRETNVLD 360

Query: 507 FLSYPDFSIQNLFSI------CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            +  P+ +   L  +        DA+     V E+++I   YA Y  RQ  +    +  E
Sbjct: 361 LIKRPELNYVTLMRVPTLGPGVDDAQ-----VAEQVEISVKYAGYLDRQRDDIARQQRHE 415

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
              IP  FDY+ +  LS E+++KL  ++P ++ QA +I GMTPAA++LLL+++++
Sbjct: 416 TTPIPDGFDYAVVRGLSIEVQQKLERVRPQHIGQAQRIPGMTPAAISLLLVHLER 470


>gi|254672744|emb|CBA06743.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha275]
          Length = 518

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/512 (43%), Positives = 313/512 (61%), Gaps = 12/512 (2%)

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +QENLD+ Q  V     + + IS ++       +   VVLT GTFL G IHIG      G
Sbjct: 4   NQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGG 63

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-- 230
           R GD  + SL     + +   GRLKTGTP R+DG+TI + +  +Q  D    P   M+  
Sbjct: 64  RAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGD---TPVPVMSVR 120

Query: 231 --DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              ++  RQ+ C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF ++
Sbjct: 121 GNAEMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADK 180

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 181 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDP 240

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  +LETK I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+
Sbjct: 241 RNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYL 300

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  
Sbjct: 301 GVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKR 360

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CP 523
           +        LK+   T + L+      +  ++  +    ++ L  P+     L ++    
Sbjct: 361 EAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAM 420

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            + + S+ V+E+++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++K
Sbjct: 421 PSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQK 480

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           L+  KP  + QAS+I G+TPAA+ LL++++K+
Sbjct: 481 LNQHKPETVGQASRISGVTPAAVALLMVHLKR 512


>gi|12045240|ref|NP_073051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma genitalium G37]
 gi|1346131|sp|P47619|MNMG_MYCGE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3844967|gb|AAC71606.1| glucose-inhibited division protein A [Mycoplasma genitalium G37]
 gi|166078798|gb|ABY79416.1| glucose-inhibited division protein A [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 612

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/599 (37%), Positives = 334/599 (55%), Gaps = 6/599 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+ + VIG GHAG EAA + +K      L+    + +GS  CNP+IGG  KG + REID 
Sbjct: 2   SFIITVIGAGHAGLEAAFIVSKFNIKVNLLVLDINHLGSCPCNPSIGGPAKGIVTREIDV 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+    AD   +Q+++LN  KGPAV+  R Q D+  Y+   Q ++   +N+++IQ E 
Sbjct: 62  LGGMQAIAADNNALQYKLLNSSKGPAVQAIRAQIDKIGYKNWFQSQVKLNKNINLIQSEA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  ++++D S +    V++TTGT+LR   + G      G      S  L  
Sbjct: 122 INLIVRNEKIKGVILKDGSELLSDAVIITTGTYLRSKTYCGNTVKNQGPDQSKNSEKLST 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           + +   F T RLKTGTP R+   ++ +++ E +  + + + FS          +QI C +
Sbjct: 182 NLINRGFKTIRLKTGTPPRILKTSLDYNQMELEINNNQNLAFSTTNKNFLPLEKQIPCYL 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN + H +I++N+K SA+++G I + GP YCPSIEDK+ +F ++  HQIF+EPE L+ 
Sbjct: 242 VHTNQKIHDLILKNLKKSAMFNGSISAQGPLYCPSIEDKVFKFSQKPRHQIFVEPESLSL 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST+   EIQ + I+ +PG +   I + GYAIEYD     +L PTLETK I  
Sbjct: 302 DTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIEN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A K  K       R ++YIGVMI+DL +K + +
Sbjct: 362 LYFAGQINGTSGYEEAAGQGLMAGINAALKLLKKPPFILQRNEAYIGVMINDLVTKTISD 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DN   RL     +LG   ++  + F K  ++   L S LK+  
Sbjct: 422 PYRLLTSRAEYRLWLRNDNVQERLIKKSFELGLTDKKTYELFLKKEKKKQELISFLKNTQ 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +        ++ F      ++ Y+F    + ++  L    P+  +  S  +++++IE  Y
Sbjct: 482 VG----KVKALKFTNKNTAQSLYDFNKRSEINLDKLIKDLPEKYQLDSETLKQIEIEIKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
             Y  +     K +    K  IP  FDY  +  L++E   KLS  KP NL  AS+I G+
Sbjct: 538 EGYIKKNEKYFKGLDKLSKIKIPHTFDYHKVKNLASEAIFKLSNFKPSNLAIASQIAGV 596


>gi|71028266|ref|XP_763776.1| glucose inhibited division protein A [Theileria parva strain
           Muguga]
 gi|68350730|gb|EAN31493.1| glucose inhibited division protein A, putative [Theileria parva]
          Length = 615

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/544 (41%), Positives = 313/544 (57%), Gaps = 78/544 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----------------------- 42
           +DV+V+GGGH+G EAA  +A++GA+T LIT   S+IG                       
Sbjct: 33  FDVLVVGGGHSGIEAATASARIGANTLLITPNLSSIGISIGFSSEILFNLVNSVIYTCVM 92

Query: 43  ------------------------SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
                                    +SCNP+IGG+GKG+LV EIDALDG+MG  AD + I
Sbjct: 93  RFRRFTKLNINSKYNKKCKIEFTGELSCNPSIGGIGKGNLVCEIDALDGVMGMCADLSAI 152

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV---------AGFNT 129
            FR LN  KGPAV GPR Q DR+LY++ +++ + +  NL  +Q  V         +    
Sbjct: 153 SFRCLNTSKGPAVVGPRVQIDRDLYKINLRKLLENYPNLFFLQDFVDELLLNSGDSNDTV 212

Query: 130 EKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG---- 175
           + N + S          + M+D  +I+   V+LTTGTFL+G  HI K     GR+     
Sbjct: 213 DTNTVDSDTGSTMNVEGVRMKDGGVIKSKCVILTTGTFLKGRCHISKQTYGGGRINRITG 272

Query: 176 --DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-- 231
             +S +++L N F K   +T R KTGTPARLD K+I ++  E Q +DE    FS++ +  
Sbjct: 273 EFESAADNLSNIFNKLGINTLRFKTGTPARLDRKSINFENLEVQESDENPKFFSYLNEDF 332

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K+TN+ I C  T+TN   H I+  N+ +   Y+  +   GPRYCPSI  K+++      H
Sbjct: 333 KVTNQLINCYKTQTNERVHSIVRNNLHNLPDYTSGL---GPRYCPSISTKVMKHPGIKSH 389

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEG+N+D++YPNG+S +     Q + +R I GLE V I+ P Y +EYD I+P  L
Sbjct: 390 IVWLEPEGVNSDIIYPNGLSGSFDINTQREMLRNIKGLENVKILTPAYDVEYDLIDPTNL 449

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGV 410
             TLE KKI+ LFLAGQI GTTGYEEA + G++AGINSA KS N  +    +R + YIGV
Sbjct: 450 KYTLELKKINNLFLAGQICGTTGYEEAGSLGVIAGINSALKSLNINEPFVINRNEGYIGV 509

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL  KG+ EPYRMFTSR+EYR+  R DN D R+   G+K G I  +++    K  + 
Sbjct: 510 LIDDLIRKGITEPYRMFTSRSEYRLQNRIDNGDVRMLIKGIKYGVIRNKKRLDLMKNNEN 569

Query: 471 YNFL 474
           + F+
Sbjct: 570 FKFM 573


>gi|326916316|ref|XP_003204454.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Meleagris
           gallopavo]
          Length = 590

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/540 (41%), Positives = 327/540 (60%), Gaps = 28/540 (5%)

Query: 102 LYRLAMQREILSQENL--------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153
           L  L+  +EILS   L        D++  E    +  K  ++ +V+ D S +   +V+LT
Sbjct: 12  LRNLSANKEILSTPLLTVREASVEDLLLTEPEANHPGKCQVTGVVLGDGSTVCAGSVILT 71

Query: 154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
           TGTFLRGVI +G    PAGR+GD P+  L  +  K  F  GRLKTGTP RL   +I +  
Sbjct: 72  TGTFLRGVILMGLETHPAGRLGDQPAVGLAQTLEKLGFTVGRLKTGTPPRLAKDSINFSG 131

Query: 214 TEKQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
            E++  D   +PFSF++  +  +   Q+ C +T TNL+  +I+++N+  +       K  
Sbjct: 132 LEERVPDNPPVPFSFLSKAVWIKPEDQLLCYMTHTNLKAQQIVLDNLHLNDHVRETAK-- 189

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPS E K++RF  R  HQ++LEPEGL +DV+YP G+S  LP E+Q Q IR+IPGLE
Sbjct: 190 GPRYCPSFESKVLRFPNRE-HQVWLEPEGLESDVIYPQGLSMTLPPELQEQVIRSIPGLE 248

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           K  I++PGY ++YD+++P++L  +LE++ +  LF AGQINGTTGYEEAAAQG++AGIN+ 
Sbjct: 249 KAKILQPGYGVQYDFLDPRQLTASLESRLVQRLFFAGQINGTTGYEEAAAQGVIAGINAC 308

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
            +         SRT+ Y+GV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT  G
Sbjct: 309 LRVQGKPPFIVSRTEGYVGVLIDDLTTLGTTEPYRMFTSRVEFRMSLRPDNADARLTHRG 368

Query: 451 M-KLGCIGERRQKRFAKYIQEYNFLR---SLLKSLVLTSKNLSSTSISFKQDGKTR---T 503
             + GC+    Q+R+ + IQ    +    + LKSL  +    S            R   +
Sbjct: 369 FEEAGCVS---QQRYEQAIQMRAAIEDGIATLKSLQFSVSRWSHLVPEVPISSNRRSPLS 425

Query: 504 AYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEE 560
           A++ L YP+ ++  L    P+  RK +    + ERL+IE++Y      Q  E +E++ +E
Sbjct: 426 AFDILRYPEANMDILARAIPEPLRKLAEWRELSERLKIEAAYEWCVINQQQEIEEVRRDE 485

Query: 561 KRLIPKDFDYSSLPA-LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
              +P+D DY ++ A LS E++EKL+  +P  +   S+I G+TPAA+  LL ++K   +K
Sbjct: 486 ALRLPEDIDYFAIDASLSAEVREKLNSSRPQTIGAVSRIPGVTPAAIINLLRFVKAEKLK 545


>gi|149408726|ref|XP_001506626.1| PREDICTED: similar to coronin, actin binding protein, 2B
           [Ornithorhynchus anatinus]
          Length = 1086

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/497 (44%), Positives = 316/497 (63%), Gaps = 21/497 (4%)

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
           SS  + D S +   +V+LTTGTFLRG++ IG  + PAGR+GD PS  L  +  +  F  G
Sbjct: 499 SSQSISDGSKVPAESVILTTGTFLRGMVLIGLEEHPAGRLGDQPSVGLAQTLEELGFVLG 558

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIECGITRTNLETHR 251
           RLKTGTP R+   ++ +   +K   D   +PFSF+++K+  R   Q+ C +T TN E  +
Sbjct: 559 RLKTGTPPRIAKDSVNFSILKKTTPDNPPVPFSFLSEKVWIRPEDQLPCYLTFTNSEVEQ 618

Query: 252 IIMENIKHSAIYSGDIK--SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           I+ ENI      +  +K  + GPRYCPSIE K++RF  R  HQI+LEPEGL++D++YP G
Sbjct: 619 IVRENIH----LNNHVKETTRGPRYCPSIESKVLRFPNRV-HQIWLEPEGLDSDLIYPQG 673

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           +S  LP E+Q Q I  I GLEK  I++PGY ++YD+++P+++ P+LETK +  LF AGQI
Sbjct: 674 LSVTLPAELQEQLITRIKGLEKAKIVQPGYGVQYDFLDPRQITPSLETKLVQRLFFAGQI 733

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGTTGYEEAAAQG+VAGIN++ K         SRT+ YIGV+IDDLT+ G  EPYRMFTS
Sbjct: 734 NGTTGYEEAAAQGVVAGINASLKVRGKPPFIISRTEGYIGVLIDDLTTLGTSEPYRMFTS 793

Query: 430 RAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           R E+R+SLRPDNAD+RLT  G  + GC+  +R +R +          S+LKS+  +S   
Sbjct: 794 RVEFRLSLRPDNADSRLTFRGYEEAGCVSRQRYERASMVKSSLEEGISVLKSVQFSSTKW 853

Query: 489 S----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKF--SSLVIERLQIESS 541
           S       IS  +     +A + L+Y +  ++ L  + PD  +KF  S  + ERL+IE+ 
Sbjct: 854 SRLIPELPISLSKSVPC-SALDILTYEEVDLEKLAKVIPDPLKKFVESRELTERLKIEAI 912

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIE 599
           Y      Q  E +E++ +E   +P+D DY S+   +LS+E++EKL+  +P  +  AS+I 
Sbjct: 913 YETMISLQQQEIEEVRRDEALQLPEDLDYMSIQTVSLSHEVREKLNSNRPRTIGAASRIP 972

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA+  LL ++K +
Sbjct: 973 GVTPAAIVNLLRFVKSS 989


>gi|298704862|emb|CBJ28379.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 808

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/404 (53%), Positives = 268/404 (66%), Gaps = 21/404 (5%)

Query: 16  AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADA 75
           AGCEAA+ +A+ GA T L+T K  TIG +SCNP+IGG+GKGH+VRE+DALDG+MGRV D 
Sbjct: 15  AGCEAASASARAGARTVLVTQKKETIGELSCNPSIGGIGKGHIVREVDALDGVMGRVIDR 74

Query: 76  AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIIS 135
           AGI FR+LN +KGPAVRGPR QADR+LYR AMQ E+    NL V +G V     E   I 
Sbjct: 75  AGIHFRMLNRRKGPAVRGPRAQADRDLYRTAMQEEMHGTPNLSVFEGSVEDVLLEGEAIK 134

Query: 136 SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDS-----PSNSLFNSFMKF 189
            IV  D + I C  VV+TTGTFLRG  +IG+    AGR + DS     PS  L  +  +F
Sbjct: 135 GIVTADGTEIACKGVVITTGTFLRGKCYIGQEWYWAGRHLRDSAHVEPPSVGLAETLERF 194

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD----KITNRQIECGITRT 245
            F  GRLKTGTP RLDG TI W   E Q ++   +PFS+M       + ++ I C  T T
Sbjct: 195 KFPLGRLKTGTPPRLDGNTINWGILEAQPSEVPPLPFSYMNALTGVSMADKLISCAKTYT 254

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRI++ N     +    +   GPRYCPSI  K+ RF +R  H  FLEPEGLNT+VV
Sbjct: 255 NEETHRIVIAN--GHKLPEPSVDGVGPRYCPSIFKKVERFPDRLQHLSFLEPEGLNTNVV 312

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+S   P +IQ Q +R++ GLE+V IIRPGY +EYDY++P+    TLETKKI GL+L
Sbjct: 313 YPNGMSGPFPADIQLQVMRSMKGLEEVEIIRPGYDVEYDYVDPRSCRHTLETKKIKGLYL 372

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARK------SNKLDCICFSR 403
           AGQI GTTGYEEAAAQG+VAG   AR+       N++    +SR
Sbjct: 373 AGQICGTTGYEEAAAQGIVAG---ARRGACCGVENQVGATSYSR 413



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           + G N+  K+         R + YIGV++DDL +KG  EPYRMFTSRAEYR+ +R DNAD
Sbjct: 460 LTGANAGLKAVGRPEFTVGRDEGYIGVLVDDLVTKGADEPYRMFTSRAEYRLYMRADNAD 519

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL--LKSLVLTSKNLSSTSISFK----- 496
            RLT  G + G +GE R +      +E     SL  LK   LT        +  +     
Sbjct: 520 LRLTAKGYEAGIVGEERMEFM--MAREAAVSESLYELKRFSLTVGGWQGYGLDLQFGNKG 577

Query: 497 QDGKTRTAYEFLSYPDFSIQ 516
            DG+ + A E +  PD  ++
Sbjct: 578 ADGRRKNAAEMVQLPDVPLE 597



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 18/156 (11%)

Query: 474 LRSLLKSLVLTSKNLSSTS----ISFKQDGKTRTAYEFL------SYPDFSIQNLFSICP 523
           LRS  K+L    K +   +    I + Q  + R   E L      S  + S  + F   P
Sbjct: 615 LRSREKALDAAVKAMGVEATLKDIGWDQVAEGRDPLEVLEDVREASARELSKVSTFERTP 674

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS--LPALSNELK 581
           D         E ++    Y  Y  RQ+ E +  +  ++  IP D  Y+   LP++S E  
Sbjct: 675 D------FARETVEASCKYMNYMDRQVKEMESWRRNQEFRIPADIQYTHDLLPSMSAEEL 728

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           EKL+ ++P     AS+++G+TP +L  L  ++ + +
Sbjct: 729 EKLNTVRPETFAAASQMQGITPHSLVYLYNHVTRKS 764


>gi|320335882|ref|YP_004172593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Deinococcus maricopensis DSM 21211]
 gi|319757171|gb|ADV68928.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Deinococcus maricopensis DSM 21211]
          Length = 612

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 353/616 (57%), Gaps = 27/616 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +++V+VIGGGHAG EAA  AAK  A TAL+    +T+G M CNPA+GG GK  +V E+ A
Sbjct: 9   TWNVLVIGGGHAGIEAAWAAAKY-ARTALMISNPATLGRMPCNPAVGGPGKSQIVFELTA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L   N+D+++ E 
Sbjct: 68  MGGLMGRLADETAIHTRVLNASKGPAVQSLRVQNERDAYAERAQDVMLGHPNVDILRAEA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A   ++      +V  D       +VV+  GTF+RGV   G+   P GR G+ P+  L  
Sbjct: 128 ADLESDGRGGWFVVSTDGRRFHARSVVIAAGTFMRGVTWYGRQSRPEGRQGEPPARFLSA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
              +      R KTGTP R+    + ++  E   AD +  P  F T +   R  Q     
Sbjct: 188 PLARGGHALKRYKTGTPPRVRADAVDFEALEVIPADPQ--PRGF-TGRPGPRAAQSPTWQ 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETHR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF   + H +F+EP+G+ T
Sbjct: 245 THTTPETHRLINENLHESPMYAGDIEGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVET 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY  G S++LP  +Q Q +RT+PG E+  I R  YA+EYD ++  EL   LE+++++G
Sbjct: 305 SEVYLQGFSSSLPPALQDQLVRTLPGFERAVIQRYAYAVEYDVVDSTELTLNLESRRLAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQINGT+GYEEAAAQGLVAG  +AR++  L     SR   YIGVM+DDL+ KG  E
Sbjct: 365 VYTAGQINGTSGYEEAAAQGLVAGAAAARRALGLGEEIVSRETGYIGVMLDDLSFKGSDE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAKYIQEYNFLRSLLKSL 481
           PYRM TSR E+R+ +R DNAD R+TP+   LG +  E R +   KY +            
Sbjct: 425 PYRMMTSRVEHRLLVRQDNADERMTPLAHALGLVDAEERARVQTKYGR------------ 472

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                   +   + + +G   TAY  L  P+F + +L ++       S+   E L+I   
Sbjct: 473 ---IAEAEAQLAAQRVNGTDGTAY--LRRPEFGLSDLDALGFTLPLLSAEEREALEIRVK 527

Query: 542 YAAYTGRQMIE-AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           YA Y  R   + A E K  +  L     DY+ +P+LS E +EKL+  +P  L QAS++ G
Sbjct: 528 YAGYIDRARRQLASEAKARDLALT--GVDYARVPSLSQEAREKLTRAQPLTLDQASRVPG 585

Query: 601 MTPAALNLLLIYIKKN 616
           +  + +  LL+++++ 
Sbjct: 586 VRHSDITSLLVHLRQQ 601


>gi|301168597|emb|CBW28187.1| glucose inhibited division protein A [Bacteriovorax marinus SJ]
          Length = 615

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 355/618 (57%), Gaps = 22/618 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+ +IGGGHAG EAA ++++      +++     + S  CNPA+GG+GKG +VREID
Sbjct: 2   QKFDIAIIGGGHAGVEAAWISSQFDLKVLILSMPNVGLASTPCNPAVGGVGKGQVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG++AD + IQ+R+LN  KG AV+  R Q D++LY    +  I +  N+ V++ +
Sbjct: 62  ALGGLMGQLADQSAIQYRILNESKGYAVQSTRVQVDKDLYTKNAEAMIAANPNITVVKEK 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR---MGDSPSN 180
           V   + EKN     +  + S    +  ++TTGTFL G +H G++    GR   M  +   
Sbjct: 122 V--ISVEKNGDQFSIKTEASYFNTTKCIVTTGTFLNGKLHTGEVSTSGGRVDCMASAGMG 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +F+S         R KTGTPAR++  ++ + K  +Q +D R   F  + +       Q+
Sbjct: 180 EIFSSVQTLGI---RFKTGTPARINKDSLDYSKFVEQKSDGRTKNFHSLNNPYERFVDQV 236

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I  TN  T  II +N + S IY+G IK  GPRYCPSIEDK  R+ +RN H +F+EPE
Sbjct: 237 SCYIAHTNERTLGIIRDNKERSPIYNGQIKGVGPRYCPSIEDKAFRYPDRNSHHVFVEPE 296

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+ + +YPNG+ST+LP+E+Q +F+RTI G E+  I   GYA+EYD ++  +L   LE  
Sbjct: 297 GLSANTIYPNGVSTSLPKEVQLEFLRTIEGFEECEIELYGYAVEYDVVDTSKLSDCLEYI 356

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQ+NGT+GYEEAA QGL+AG N+A      D +   R +SYIGVM++DL S 
Sbjct: 357 DIPGLFFAGQVNGTSGYEEAAGQGLIAGANAALSMKGKDNLVLDRAESYIGVMVEDLISN 416

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYR+FT+R+E R+ +R DN+ NR+     ++G + +   K   ++I+E+  L  L 
Sbjct: 417 KRDEPYRLFTARSENRLYVREDNSINRMAKYRFQMG-LDKEIDKYQQEFIEEFELLLGLC 475

Query: 479 K--SLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFS-IQNLFS-ICPDARKFSSLVI 533
           K  S+ +T +N     S+ +    K  T  E +     + ++ L   +      FSS V+
Sbjct: 476 KSTSIYVTPENKEYFASMGYGDLSKNITLSELVRRSQLNPVETLEQELSKRGALFSSEVV 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEKLSILKPFN 591
               +   Y  Y  R +IE + I     RL  K  D+ S+    +SNE ++++  +KP  
Sbjct: 536 YTCAVSIKYEGYINRSLIENERI----YRLGRKKIDWQSIVRGNISNECRQRIEEVKPTT 591

Query: 592 LLQASKIEGMTPAALNLL 609
             Q  +I+G+ PA L  +
Sbjct: 592 FSQLQRIDGIRPATLAFV 609


>gi|68074703|ref|XP_679268.1| glucose inhibited division protein A [Plasmodium berghei strain
           ANKA]
 gi|56499976|emb|CAI00294.1| glucose inhibited division protein A homologue, putative
           [Plasmodium berghei]
          Length = 863

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/547 (42%), Positives = 314/547 (57%), Gaps = 91/547 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGH GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EID
Sbjct: 9   KKYDVIVIGGGHGGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++  
Sbjct: 69  ALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILENT 128

Query: 124 VAGFNTEKNII--SSIVMQDNSMIR--------CS------TVVLTTGTFLRGVIHI--- 164
                 E ++    S  M++    +        CS       V+LTTGTFL G+ HI   
Sbjct: 129 AHSLLIENSMTRNDSTNMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGICHIGKD 188

Query: 165 ----GKLKIPAGRMGDS------------------------------------------P 178
               G++K   G+  D+                                           
Sbjct: 189 KYKGGRIKRILGKGKDNQLTDAGTINSSKIKKETNKNKMQKINDIHNCIGNNNDNKNEME 248

Query: 179 SNSLFNSFMK------------FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
            NS+F + ++             +F+  R+KTGTP RL   +I +D  EK+   E+  PF
Sbjct: 249 PNSIFYNLIEESTKNIATQLKENNFEIKRMKTGTPPRLCKNSINFDILEKE-GTEKKHPF 307

Query: 227 SFM---TDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDK 281
            F    ++KI N + + C  T TN++TH ++++ +     +   D    GPRYCPSI  K
Sbjct: 308 YFSFLNSNKINNNKTLPCYKTYTNIKTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKK 367

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           + +F E+  H I+LEPEG N  ++YPNG+S+A P   Q + I +I GLE   I+ P Y +
Sbjct: 368 VTKFSEKKKHIIWLEPEGFNNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDV 427

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK------ 395
           EY Y+NPK L  TLETK I+GLFL+GQI GTTGYEEAA QG+VAGIN+A  S K      
Sbjct: 428 EYFYVNPKCLNYTLETKIINGLFLSGQICGTTGYEEAACQGIVAGINAALNSLKKKNINI 487

Query: 396 --LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
             ++    +R DSYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDNAD RLTP   KL
Sbjct: 488 SSINNFVLTRNDSYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNADIRLTPKVAKL 547

Query: 454 GCIGERR 460
           G   + R
Sbjct: 548 GIASKER 554



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK--DFDYSSLPALSNELKEKLSILKP 589
           V+E    E  Y++Y  +Q+ E  +IK      IPK   +D ++ P LSNE  EKL+  +P
Sbjct: 766 VLETACAEVKYSSYLKKQINEINKIKNNFNLAIPKTIKYDRNNFPYLSNEEIEKLTKFRP 825

Query: 590 FNLLQASKIEGMTPAALNLLLIYI 613
            NL +A+KIEG+T + +  L  YI
Sbjct: 826 SNLNEANKIEGVTMSGIYYLYHYI 849


>gi|326435253|gb|EGD80823.1| hypothetical protein PTSG_11724 [Salpingoeca sp. ATCC 50818]
          Length = 540

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/464 (40%), Positives = 288/464 (62%), Gaps = 8/464 (1%)

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
           IG  +IPAGR G+ P+  L         F  GRL+TGTP RL   +I +    +Q ++  
Sbjct: 75  IGTQRIPAGRKGEGPTTRLAQVLQDDCQFRMGRLRTGTPPRLHVDSIDFSGMVEQKSEYP 134

Query: 223 LIPFSFMTDKIT--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
            +PFSF+TD++   +  + C +T TN E H I+ E +  +     ++   GPRYCPSIE 
Sbjct: 135 PVPFSFLTDQVDQIDNLVSCHMTYTNAEAHAIVHETLHENCHIQEEVT--GPRYCPSIES 192

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           K++RF +R+ HQ++LEPEGLN++V+YPNGIS  +PEE Q +FIR +PGL+   I++PGY 
Sbjct: 193 KVLRFTDRDQHQVWLEPEGLNSEVIYPNGISMTMPEEAQQRFIRLMPGLQNATIVQPGYG 252

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
           + YDYI+P+EL  TLETKK++GLFLAGQINGTTGYEEAA+QG++AG+N+A  +  L  + 
Sbjct: 253 VAYDYIDPRELQHTLETKKVAGLFLAGQINGTTGYEEAASQGIIAGVNAASAARALPPLV 312

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R  +YIGV+IDDL + GV EPYRMFTSRAEYR+++R DNAD RLT +G K GC+ E R
Sbjct: 313 LDRAQAYIGVLIDDLVTNGVSEPYRMFTSRAEYRMTIRADNADVRLTELGYKAGCVSEDR 372

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN 517
            ++      +       +++  L+    +   S       DGK R+A + +      ++ 
Sbjct: 373 YQQSKATTDQLVACLDAMRACSLSVHEWEKFVSLQKPMAHDGKQRSALDLVGKRFVDMEQ 432

Query: 518 LFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
           L ++ P+ +     + ER+ IE+ Y  +  +Q    ++ + EE+ ++P+D DY  +P+L 
Sbjct: 433 LVTMVPELKHADHSMRERIFIEALYDQFKKKQESSIRQYRKEEQLVLPEDLDYDKVPSLP 492

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            E  + L   +P  L  AS++ G++ A+   LL +++K  +  N
Sbjct: 493 REAVDALKAARPATLGAASRLRGVSAASCITLLTHVRKRKMAAN 536



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 14/97 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGGHAGCEAAA +A++GA T L+T K  TIG+    PA G  G+G   R  
Sbjct: 37  NVHYDVVVIGGGHAGCEAAAASARVGARTVLVTQKKDTIGTQRI-PA-GRKGEGPTTRLA 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
             L             QFR+  ++ G     PR   D
Sbjct: 95  QVLQD---------DCQFRMGRLRTGTP---PRLHVD 119


>gi|253582573|ref|ZP_04859794.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium varium ATCC 27725]
 gi|251835443|gb|EES63983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium varium ATCC 27725]
          Length = 616

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/599 (37%), Positives = 342/599 (57%), Gaps = 4/599 (0%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EA+  AA+LG  TA+ T    TI  MSCNP+IGG GK +LV E+D L G MGR  D   +
Sbjct: 19  EASLAAARLGKKTAMFTLYLDTIAMMSCNPSIGGPGKSNLVAEMDILGGEMGRHTDKFNL 78

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
           Q + LN  KGPA R  R QAD+ LYR  M++ +   +NL++IQ  V     E   I  I+
Sbjct: 79  QLKHLNESKGPAARITRGQADKYLYRTEMRKILEHTDNLEIIQDCVDEIIVENGRIKGII 138

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            +         VVL TGTFL+G I IG +   AGR G++ +  L +S  +      R +T
Sbjct: 139 TRLGIKYYAECVVLATGTFLKGKIVIGDVAYSAGRQGENSAEKLSDSLREHGITIERYQT 198

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
            TP RLD ++I + K ++   +E    FS  TDK  N  +   +T T  +T  +  E ++
Sbjct: 199 ATPPRLDKRSIDFSKMKELKGEEHPRYFSIFTDKERNNVVPTWLTYTTEKTIEVAKEMLQ 258

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           +S I SG IK++GPR+CPS++ K++ F +++ HQIFLE E   ++ VY NG++TA+P   
Sbjct: 259 YSPIVSGIIKTHGPRHCPSLDRKVINFPDKSNHQIFLELESAESEEVYVNGLTTAMPPFA 318

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE   ++R GYA+EYDY    +L+P+LE+KKI GL+ AGQINGT+GYEEA
Sbjct: 319 QEAMMRTIAGLENARVMRYGYAVEYDYAPAAQLYPSLESKKIEGLYFAGQINGTSGYEEA 378

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG +AG+N+ARK++  + +   R++ YIGV+IDD+  K   EPYR+  SR+EYR++LR
Sbjct: 379 ACQGFIAGVNAARKADGKEPVIIDRSEGYIGVLIDDIIHKKTPEPYRVLPSRSEYRLTLR 438

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNA  RL     ++G +   +       I+  N   + LK + +     ++       D
Sbjct: 439 FDNAFMRLFTKAKEIGILSSEKLDYLENSIKIVNDEIARLKEISVPMVQANALLEKLGSD 498

Query: 499 GKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKE 555
            K        + L   + +  +L  I  +   +   +  +++    Y  +  R+  + ++
Sbjct: 499 QKLTKGVKIGDLLKIKEVTYDSLKDIT-EINDYPGFIKNQIETMIKYEIFIQRENEQIEK 557

Query: 556 IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            K  E+  IP DFD+S +  +SN  +  L  +KP ++ +AS+I G+T   + LL+ Y+K
Sbjct: 558 FKRLEEVKIPADFDFSEVKGISNIARCGLEEIKPLSIGEASRISGVTGNDIALLVGYLK 616


>gi|296314586|ref|ZP_06864527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria polysaccharea ATCC 43768]
 gi|296838663|gb|EFH22601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria polysaccharea ATCC 43768]
          Length = 402

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/375 (52%), Positives = 248/375 (66%), Gaps = 1/375 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVILDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEE 377
           LF AGQINGTTGYEE
Sbjct: 368 LFFAGQINGTTGYEE 382


>gi|257470413|ref|ZP_05634504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064621|ref|ZP_07929106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium ulcerans ATCC 49185]
 gi|313690297|gb|EFS27132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium ulcerans ATCC 49185]
          Length = 616

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 342/599 (57%), Gaps = 4/599 (0%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EA+  AA+LG  TA+ T    TI  MSCNP+IGG GK +LV E+D L G MGR  D   +
Sbjct: 19  EASLAAARLGKKTAMFTLYLDTIAMMSCNPSIGGPGKSNLVAEMDILGGEMGRHTDKFNL 78

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
           Q + LN  KGPA R  R QAD+ LYR  M++ +   +NL++IQ  V     E   +  I+
Sbjct: 79  QLKHLNESKGPAARITRGQADKYLYRTEMRKLLEHTDNLEIIQDCVDEIIVEDGKVKGII 138

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            +         VVL TGTFL+G I IG +   AGR G++ +  L +S  +      R +T
Sbjct: 139 TRLGIKYYAQCVVLATGTFLKGKIVIGDVAYSAGRQGENSAEKLSDSLREHGITIERYQT 198

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
            TP RLD ++I + K ++   +E    FS  TDK  N  I   +T T  +T  +  E ++
Sbjct: 199 ATPPRLDKRSIDFSKMKELKGEEYPRYFSIFTDKERNNVIPTWLTYTTEKTIEVAKEMLQ 258

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           +S I SG IK++GPR+CPS++ K++ F +++ HQIFLE E   ++ VY NG++TA+P   
Sbjct: 259 YSPIVSGIIKTHGPRHCPSLDRKVINFPDKSNHQIFLELESAESEEVYVNGLTTAMPPFA 318

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE   ++R GYA+EYDY    +L+P+LE+KK+ GL+ AGQINGT+GYEEA
Sbjct: 319 QEAMMRTIAGLENARVMRYGYAVEYDYAPAAQLYPSLESKKVEGLYFAGQINGTSGYEEA 378

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG +AG+N+ARK++  + +   R++ YIGV+IDD+  K   EPYR+  SR+EYR++LR
Sbjct: 379 ACQGFIAGVNAARKADGKEPVIIDRSEGYIGVLIDDIIHKKTPEPYRVLPSRSEYRLTLR 438

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNA  RL     ++G +   +       I+  N   + LK + +     ++       D
Sbjct: 439 FDNAFMRLFTKAKEIGILSSEKLDYLENSIKIVNDEIARLKEISVPMVQANALLEKLGSD 498

Query: 499 GKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKE 555
            K        + L   + +  +L  I  +   +   +  +++    Y  +  R+  + ++
Sbjct: 499 QKLTKGVKIGDLLKIKEVTYDSLKDIT-EISDYPGFIKNQIETMIKYEIFIQRENEQIEK 557

Query: 556 IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            K  E+  IP DFD+S +  +SN  +  L  +KP ++ +AS+I G+T   + LL+ Y+K
Sbjct: 558 FKRLEEVRIPADFDFSEVKGISNIARCGLEEIKPLSIGEASRISGVTGNDIALLVGYLK 616


>gi|321311053|ref|YP_004193382.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Mycoplasma haemofelis str. Langford 1]
 gi|319802897|emb|CBY93543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Mycoplasma haemofelis str. Langford 1]
          Length = 618

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/604 (38%), Positives = 336/604 (55%), Gaps = 13/604 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           IN+ +DV VIG GHAG EAA +A+K     AL      +I ++ CNP+IGG  KG + RE
Sbjct: 3   INKEFDVAVIGAGHAGLEAAFIASKFNLRVALFNLNKESIANLPCNPSIGGPAKGVVTRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+    AD   IQ + LN  KGP V   R Q D+E +     ++I    N++++ 
Sbjct: 63  IDALGGIQAIAADENKIQIKKLNQSKGPGVWAYRAQIDKETFHDWFIKKIEDDPNIELLL 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +  +    N + RC T+++TTGT+L+  ++  K    +G   +  SN 
Sbjct: 123 EEVVELLKEGDEVKGLRTV-NGIYRCKTLIVTTGTYLKAELYREKKFADSGPDNNPASNF 181

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++F  +  +  RLKTGTP R+   +I + + E   +++  I FSF   K      Q+ 
Sbjct: 182 LSDTFRNWGIELLRLKTGTPPRVYLDSIDFSQLEVDDSNDGNISFSFREPKKLPLEEQMH 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  T   T + ++ +++    Y+G I   GPRYCPSIEDK V+F  R  H IF+EP  
Sbjct: 242 CYLAETTPLTKKFVLHHLEECGTYNGSICGTGPRYCPSIEDKYVKFPNREKHFIFVEPIA 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            N D  Y  G+ST+L +++Q + +RTI G + V I +  YAI YD INP +L  TLE KK
Sbjct: 302 RNYDYCYLAGLSTSLNKDLQEKLLRTIKGFQNVRIKKHAYAIVYDAINPIQLLKTLECKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQINGT+GYEEAAAQGL+AGIN++ K    +     R ++YIGVMIDDLT++G
Sbjct: 362 VKNLFFAGQINGTSGYEEAAAQGLIAGINASLKVLNREPFILRRDEAYIGVMIDDLTTRG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAE+R+ LR DNAD RL  +G +LG I E   + F K  ++ NF    LK
Sbjct: 422 VTEPYRLLTSRAEHRLLLRNDNADERLLGLGRELGTIEESFYRDFLKVQEDINFNIDFLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIERLQI 538
                 KN ++T   ++      T + +L+  + S   L  I     R  S    E+L I
Sbjct: 482 ------KNYAAT---YRLAEGNLTLFSWLARGENSYSELSEILGSKLRSLSVEAQEKLMI 532

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y   Q      ++   K  + K  DYS +  LS E +E+L+  +P  +  A KI
Sbjct: 533 KVKYEGYIRAQETRINRLEKWRKLSLLKIKDYSDIQNLSREARERLNSERPITVDDALKI 592

Query: 599 EGMT 602
            G+ 
Sbjct: 593 SGIN 596


>gi|119569150|gb|EAW48765.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_f [Homo sapiens]
          Length = 555

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/487 (43%), Positives = 307/487 (63%), Gaps = 17/487 (3%)

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D S +   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGT
Sbjct: 43  DGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGT 102

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR---QIECGITRTNLETHRIIMENI 257
           P R+  ++I +    K   D   IPFSF  + +  +   Q+ C +T TN     I+++N+
Sbjct: 103 PPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNL 162

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             ++      +  GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E
Sbjct: 163 HLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAE 219

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           +Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEE
Sbjct: 220 LQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEE 279

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SL
Sbjct: 280 AAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSL 339

Query: 438 RPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTS 492
           RPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S    K +   S
Sbjct: 340 RPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEAS 399

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQ 549
           IS  +    R A + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q
Sbjct: 400 ISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQ 458

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALN 607
           + E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+ 
Sbjct: 459 LQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAII 518

Query: 608 LLLIYIK 614
            LL ++K
Sbjct: 519 NLLRFVK 525


>gi|153870744|ref|ZP_02000079.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Beggiatoa sp. PS]
 gi|152072791|gb|EDN69922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Beggiatoa sp. PS]
          Length = 439

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/423 (46%), Positives = 279/423 (65%), Gaps = 3/423 (0%)

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRII 253
           RLKTGTP RLD +++ +   + Q  D+ +  FSF  +   + RQI C ITRTN +TH II
Sbjct: 7   RLKTGTPPRLDSQSLDYSVMQLQPGDDPVPIFSFQGNPSQHPRQISCYITRTNEKTHEII 66

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
              ++ S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  VYPNGIST+
Sbjct: 67  RSGLERSPMYTGVIEGIGPRYCPSIEDKIVRFADKNSHQIFVEPEGLETFEVYPNGISTS 126

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           LP +IQ   +R+I G EK +I R GYAIEYD+ +P++L P+LETK I GLF AGQINGTT
Sbjct: 127 LPFDIQLALVRSITGFEKAHITRAGYAIEYDFFDPRDLQPSLETKVIKGLFFAGQINGTT 186

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAAAQGL+AG+N+AR+          R ++Y+GV+IDDL ++G  EPYRMFTSRAEY
Sbjct: 187 GYEEAAAQGLIAGLNAARQVQGKPPWTPRRDEAYVGVLIDDLITRGTNEPYRMFTSRAEY 246

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI 493
           R+ LR DNAD RLT IG +LG +G+ R + F    +     +  L+ + +   + ++  +
Sbjct: 247 RLLLREDNADLRLTEIGRELGLVGDTRWRSFETKKEAIETEKQRLRQIWIRPTDPATAQL 306

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESSYAAYTGRQMIE 552
               + +     + L  PD S ++L  + P A    ++ V+++++I+  Y+ Y  RQ  E
Sbjct: 307 KTTINREI-NCLDILRRPDVSYEDLLIMPPVATHTVAAEVMQQVEIQQKYSGYIERQQTE 365

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
              ++  E   +P D DY+ +  LS E+ +KL   +P ++ QAS+I G+TPAA++LLL+Y
Sbjct: 366 IARLRRYETASLPTDMDYTQVKGLSAEVCQKLMAHRPTSVGQASRIPGVTPAAISLLLVY 425

Query: 613 IKK 615
            KK
Sbjct: 426 FKK 428


>gi|163785117|ref|ZP_02179822.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879615|gb|EDP73414.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 376

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 241/372 (64%), Gaps = 10/372 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DV+VIGGGHAG EAA  +AKLG  TALIT     +G M CNPAIGG+ KG +VREI
Sbjct: 4   DTDFDVVVIGGGHAGIEAALASAKLGVKTALITLDKEKVGLMPCNPAIGGIAKGIVVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA  G MG+  D  G+Q+++LN +KGPAV+ PR QAD+E YR  M  +  + ENL VI+G
Sbjct: 64  DAFGGEMGKAIDTTGLQYKMLNTRKGPAVQSPRAQADKEEYRKYMVNKTQNTENLTVIEG 123

Query: 123 EVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           E          N +  + +  N  I+  +VV+TTGTFL GVIHIG  + PAGRM + P+ 
Sbjct: 124 EATNIFLKPYSNEVEGVEIDGNIKIKAKSVVVTTGTFLDGVIHIGDKQFPAGRMDEKPAQ 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------- 233
            L + + +  F   R KTGTPARLD  TI W   E+   DE    FSF T+ +       
Sbjct: 184 KLPDFYKEHGFPLVRFKTGTPARLDKNTINWSILEEALGDEPPPKFSFWTEPVGSYWFKE 243

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C IT T  ETH+II +N+  +A+Y G I   GPRYCPSIEDKIV+F  +  H 
Sbjct: 244 GQKEQVSCYITYTTEETHKIIRKNLHRTALYGGAITGVGPRYCPSIEDKIVKFENKARHT 303

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPE  +   +YPNG+ST+LPEE+Q Q  R+IPGLE V +++P YAIEYD + P EL+
Sbjct: 304 VWLEPETRDGISIYPNGLSTSLPEEVQWQMYRSIPGLENVVLLKPAYAIEYDVVPPTELY 363

Query: 353 PTLETKKISGLF 364
           PTLETKK+ GL+
Sbjct: 364 PTLETKKVRGLY 375


>gi|315045095|ref|XP_003171923.1| hypothetical protein MGYG_06467 [Arthroderma gypseum CBS 118893]
 gi|311344266|gb|EFR03469.1| hypothetical protein MGYG_06467 [Arthroderma gypseum CBS 118893]
          Length = 557

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 312/582 (53%), Gaps = 77/582 (13%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LYR  M  E+ +   L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYRKYMLEELTNTPGL 60

Query: 118 DVIQGEVA----------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++G+VA            N  +  I  + ++   +I    V++TTGTFL G IHIG  
Sbjct: 61  SIVEGKVADIVVSKENVANLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 AFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEIQPGDSPPSPFS 180

Query: 228 FMT------DKITNRQIECGITRTNLE-THRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
           ++       DK+  +     + RT    T R  +       I S  +K+Y          
Sbjct: 181 YLNDSVQIGDKVQGQAETYDLVRTGRPCTKRCDLSGPNFGIITSVVMKAYP--------- 231

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
                         +EP GL                   + ++             PGY 
Sbjct: 232 --------------VEPTGL-------------------YAWLGA-----------PGYG 247

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
           +EYDY++P+ L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     + 
Sbjct: 248 VEYDYVDPRSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGILAGINAGLASQSKPPMT 307

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
            SR D +IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R
Sbjct: 308 LSRADGFIGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADMRLTAKGRAAGVVSDKR 367

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-- 518
            ++F +  ++ ++L++LL++    S   +      + D   R+A+E LS+   S+ ++  
Sbjct: 368 WRQFGEVREQMSYLQALLENTRHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSLDDIIP 427

Query: 519 -FSICPDA----RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                P +      FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++
Sbjct: 428 HIDSTPGSPHSLSSFSPQIKSRMAIEGRYAPYTKRQEASALLFERDEGMLLPPDIDYSTM 487

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             LS E ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 488 LGLSTEERQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 529


>gi|213024279|ref|ZP_03338726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 381

 Score =  365 bits (938), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 183/377 (48%), Positives = 244/377 (64%), Gaps = 1/377 (0%)

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD P
Sbjct: 1   IFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPP 60

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQ 237
           S  L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + +Q
Sbjct: 61  SIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQ 120

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEP
Sbjct: 121 VPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEP 180

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+
Sbjct: 181 EGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLES 240

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL +
Sbjct: 241 KFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCT 300

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  
Sbjct: 301 LGTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQR 360

Query: 478 LKSLVLTSKNLSSTSIS 494
           LKS  +T    S+  ++
Sbjct: 361 LKSTWVTPSAESADEVN 377


>gi|190344036|gb|ACE75814.1| protein MTO1 homolog, mitochondrial precursor (predicted) [Sorex
           araneus]
          Length = 549

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/443 (47%), Positives = 287/443 (64%), Gaps = 28/443 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ GA T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 38  FDVLVIGGGHAGSEAAAAAARCGARTLLLTHRVETIGQMSCNPSFGGIGKGHLMREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GRV D +GI ++VLN +KGPAV G R Q DR+LY+  MQ+E+L    L V +G V 
Sbjct: 98  DGLCGRVCDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKELLGTPLLTVQEGAVE 157

Query: 126 GFNTE--------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
               E        K  +S +V+ D S +   +VVLTTGTFLRG++ IG    PAGR+GD 
Sbjct: 158 DLILEEAEPGHPGKCRVSGVVLVDGSAVYADSVVLTTGTFLRGMVVIGLETHPAGRLGDQ 217

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D    PFSF+ + +  + 
Sbjct: 218 PSIGLAQTLEKLGFMVGRLKTGTPPRIAKESINFSILNKQEPDNPSTPFSFINETVWIKP 277

Query: 237 --QIECGITRTNLETHRIIMENIKHSAIYSGDIK--SYGPRYCPSIEDKIVRFGERNGHQ 292
             Q+ C +T TN +   I++EN+      +  IK  + GPRYCPSIE K++RF  R  HQ
Sbjct: 278 EDQLPCYLTHTNPKVDEIVLENLH----LNSHIKETTRGPRYCPSIESKVLRFPNRL-HQ 332

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL++D++YP G+S  LP E+Q + I  I GLEK  +++PGY ++YDY++P+++ 
Sbjct: 333 VWLEPEGLDSDLIYPQGLSVTLPAELQEKIITCIRGLEKAKMVQPGYGVQYDYLDPRQIS 392

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQG--LVAGINSARKSNKLDCICFSRTDSYIGV 410
           P+LET  +  LF AGQINGTTGYEEAAAQ    +AG +   K  K   +C S   S + V
Sbjct: 393 PSLETHLVQRLFFAGQINGTTGYEEAAAQSPPCIAGCDPKSKQTKQKQLCLS---SALDV 449

Query: 411 M----ID-DLTSKGVLEPYRMFT 428
           +    +D +L +K V EP + +T
Sbjct: 450 LKYEEVDMELLAKAVPEPLKKYT 472



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 503 TAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFE 559
           +A + L Y +  ++ L    P+  +K++    + ERL+IE++Y +    Q  E KE++ +
Sbjct: 445 SALDVLKYEEVDMELLAKAVPEPLKKYTGCRELAERLKIEATYESVLLHQQQEIKEVQRD 504

Query: 560 EKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEG 600
           E   +P+D DY +L   +LS+E++EKL + +P     A+++ G
Sbjct: 505 EALQLPRDLDYLTLRDISLSDEVREKLHLSRPQTQSSANQVSG 547


>gi|308804834|ref|XP_003079729.1| glucose inhibited division protein A (ISS) [Ostreococcus tauri]
 gi|116058186|emb|CAL53375.1| glucose inhibited division protein A (ISS) [Ostreococcus tauri]
          Length = 595

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/470 (44%), Positives = 276/470 (58%), Gaps = 25/470 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A++GA T L+T     +    CNPA+GG  K  LV EIDAL
Sbjct: 57  YDVIVVGAGHAGCEAALASARVGAKTLLLTLSLDRVAWQPCNPAVGGPAKSQLVHEIDAL 116

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG ++D   +Q RVLN  +GPAV   R Q D+  Y   M+  +  +ENL + +G V 
Sbjct: 117 GGAMGIISDKTYVQKRVLNASRGPAVWALRAQTDKYEYSREMRATLEKEENLSIREGMVT 176

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 N  +  +V           VVLTTGTF+ G I +G+  + AGR G++PS  L  
Sbjct: 177 ELLLGNNDDVRGVVTHFGMEFEAKAVVLTTGTFMNGQIWVGRKTLAAGRAGEAPSEGLTE 236

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F+  RLKTGTPAR+D +TI +   E+Q  DE +  FSF               R
Sbjct: 237 YLQTLGFEVDRLKTGTPARVDTRTIDYTNLEEQPGDEDVRWFSF--------------DR 282

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGLN 301
                 R I+  + H A   GD ++       + +   DK+    +   HQIFLEPEG +
Sbjct: 283 GRARGARAIV--LPHDANNGGDAQTDRRESIGNADVRWDKLCACRQGESHQIFLEPEGRS 340

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G ST LPE++Q + +RT+PGLE V I+RP YA+EYD++   +  PTLETKKIS
Sbjct: 341 TPEVYVQGFSTGLPEKLQLELLRTLPGLENVKILRPAYAVEYDFLPAYQCKPTLETKKIS 400

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSAR-----KSNKLDCICFSRTDSYIGVMIDDLT 416
           GLF +GQINGTTGYEEAAAQGL+AG N+A+       N    + F R  SY+G +IDDL 
Sbjct: 401 GLFFSGQINGTTGYEEAAAQGLLAGANAAQIAKGGARNGAKELIFPRESSYLGTLIDDLC 460

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           +K + EPYRM TSR+EYR+ LR DNAD RLTP+G + G I + R  +F K
Sbjct: 461 TKDLREPYRMLTSRSEYRLVLRSDNADMRLTPLGREFGLISDARWAKFEK 510


>gi|297581979|ref|ZP_06943899.1| glucose inhibited division protein A [Vibrio cholerae RC385]
 gi|297533846|gb|EFH72687.1| glucose inhibited division protein A [Vibrio cholerae RC385]
          Length = 384

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 184/366 (50%), Positives = 238/366 (65%), Gaps = 1/366 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFL 365
           I GLFL
Sbjct: 362 IHGLFL 367


>gi|254230609|ref|ZP_04923968.1| glucose inhibited division protein A, putative [Vibrio sp. Ex25]
 gi|151936869|gb|EDN55768.1| glucose inhibited division protein A, putative [Vibrio sp. Ex25]
          Length = 451

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/446 (44%), Positives = 274/446 (61%), Gaps = 15/446 (3%)

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 2   ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQIP 61

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 62  CFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 121

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 122 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 181

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 182 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 241

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R  RF + +      R  LK
Sbjct: 242 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDNVRWARFNEKLNNMETERQRLK 301

Query: 480 SLVLTSKN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SS 530
           S  +  K+        L  T ++ +  G+     + L  P+ +   L  +   A      
Sbjct: 302 STWMNPKSEGVDELNKLLKTPMAREASGE-----DLLRRPEITYSQLTQLEAFAPALEDQ 356

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E+++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP 
Sbjct: 357 QAAEQVEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPE 416

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKN 616
           ++  AS+I G+TPAA+++LL+++KK+
Sbjct: 417 SIGIASRISGITPAAISILLVHLKKH 442


>gi|229087971|ref|ZP_04220078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
 gi|228695340|gb|EEL48218.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
          Length = 395

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/356 (50%), Positives = 231/356 (64%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLCQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCRGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   +  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGLELVRFKTGTPPRVNSSTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKK+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKL 362


>gi|46205292|ref|ZP_00048731.2| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Magnetospirillum magnetotacticum MS-1]
          Length = 281

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 161/281 (57%), Positives = 204/281 (72%)

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           +REIDALDGLMGRV D AGIQFR+LN  KGPAV+GPR QADR+LYRLAM+  +   E L 
Sbjct: 1   MREIDALDGLMGRVIDRAGIQFRILNRSKGPAVQGPRAQADRKLYRLAMRAALDETETLT 60

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +++G       E   ++ +V+ D S + C  VV+TTGTFLRG+IH+G+   PAGR+GD+P
Sbjct: 61  LLEGSAEDLVIEDGRVAGVVLADGSTLTCGAVVITTGTFLRGLIHLGEKTWPAGRVGDAP 120

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           S  L  +  +     GRLKTGTPARLDG+TI W+  ++Q  D+  +PFS++T  IT  Q+
Sbjct: 121 SLGLSLALERAGLPLGRLKTGTPARLDGRTIDWESLDRQDGDDPPVPFSYLTHSITTPQV 180

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            CGIT T  ETH II  N++ + +YSG I+S GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 181 ACGITATTPETHAIIRANLERAPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQIFLEPE 240

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           GL+ D VYPNGIST+LPE++Q   I TIPGLE   +IRPGY
Sbjct: 241 GLDDDTVYPNGISTSLPEDVQRAMIATIPGLEHCRVIRPGY 281


>gi|116334904|ref|YP_802399.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Carsonella ruddii PV]
 gi|123320796|sp|Q05FY8|MNMG_CARRP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116235185|dbj|BAF35033.1| glucose inhibited division protein A [Candidatus Carsonella ruddii
           PV]
          Length = 500

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/476 (40%), Positives = 289/476 (60%), Gaps = 15/476 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +++I+IG GH+G EAA  A+K+     +IT     +G MSCNP+IGG+GK HLV+E++  
Sbjct: 4   FNIIIIGAGHSGIEAAISASKICNKIKIITSNLENLGIMSCNPSIGGIGKSHLVKELELF 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   +D + I  ++LN KKG +V   R Q DR LY+  + + +  ++N+ + Q E+ 
Sbjct: 64  GGIMPEASDYSRIHSKLLNYKKGESVHSLRYQIDRILYKNYILKILFLKKNILIEQNEIN 123

Query: 126 G---FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               F  +  I + +   + + I    +++  GTF+   I+IGK  I A  +  +   S+
Sbjct: 124 KIIRFKKKILIFNKLKFFNIAKI----IIVCAGTFINSKIYIGK-NIKA--LNKAEKKSI 176

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             SF K +    +LKTGTP RLD   + + K   Q++D  +   S+  +   N  ++C I
Sbjct: 177 SYSFKKINLFISKLKTGTPPRLDLNYLNYKKLSVQYSDYTI---SYGKNFNFNNNVKCFI 233

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ + +  I +NIK+S++++   KS GPRYCPSIEDKI +F     HQIFLEPE   +
Sbjct: 234 TNTDNKINNFIKKNIKNSSLFNLKFKSIGPRYCPSIEDKIFKFPNNKNHQIFLEPESYFS 293

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y NG+S +L   IQ + I+ I G++K  IIR  Y I+YDY +P+ L  +L  K  + 
Sbjct: 294 KEIYVNGLSNSLSYNIQKKLIKKILGIKKSYIIRYAYNIQYDYFDPRCLKISLNIKFANN 353

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +FLAGQINGTTGYEEA++QG VAGINSARK  KL      + +SYIGV++ DLT+ G+ E
Sbjct: 354 IFLAGQINGTTGYEEASSQGFVAGINSARKILKLPLWKPKKWNSYIGVLLYDLTNFGIQE 413

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           PYR+FTS+++ R+ LR DNA  RL  I   LGC+   + K +   I  Y F ++L+
Sbjct: 414 PYRIFTSKSDNRLFLRFDNAIFRLINISYYLGCLPIVKFKYYNSLI--YKFYKNLI 467


>gi|305431781|ref|ZP_07400948.1| glucose inhibited division protein A [Campylobacter coli JV20]
 gi|304444865|gb|EFM37511.1| glucose inhibited division protein A [Campylobacter coli JV20]
          Length = 382

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 173/361 (47%), Positives = 234/361 (64%), Gaps = 1/361 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDKYRIVARNKLLKLKNLEISQEQVC 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L  +
Sbjct: 122 ELIYENGSVVGVKTNLQNTYEAKKVILTTGTFLNGLIHVGENKLTAGRVGELASVNLGQN 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +      GRLKTGT  R+D K+I +D  E Q+ D+    FSF T      Q+ C I RT
Sbjct: 182 LLSTSLKMGRLKTGTCPRVDAKSIDFDVLEIQYGDQNPKAFSFRTKNFNPIQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E+  I R GYAIEYDYI P EL+ TLETKK+  +F+
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFEEAKITRFGYAIEYDYIEPTELYHTLETKKLK-IFI 360

Query: 366 A 366
           A
Sbjct: 361 A 361


>gi|48243619|gb|AAT40770.1| putative glucose-inhibited division protein [Haemophilus
           influenzae]
          Length = 330

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 168/325 (51%), Positives = 215/325 (66%), Gaps = 1/325 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q E 
Sbjct: 66  MGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +L +
Sbjct: 126 TDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVNLSH 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                     RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + +QI C IT
Sbjct: 186 RLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPMFSFMGSVDDHPQQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL ++
Sbjct: 246 YTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPG 328
            VYPNGIST+LP ++Q   + ++ G
Sbjct: 306 EVYPNGISTSLPFDVQMGIVNSMKG 330


>gi|153827710|ref|ZP_01980377.1| hypothetical protein A5A_2951 [Vibrio cholerae MZO-2]
 gi|149737813|gb|EDM52718.1| hypothetical protein A5A_2951 [Vibrio cholerae MZO-2]
          Length = 425

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 180/412 (43%), Positives = 254/412 (61%), Gaps = 15/412 (3%)

Query: 215 EKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
           E Q  D     FSFM  +  + RQI C IT TN  TH +I  N+  S +Y+G I+  GPR
Sbjct: 10  EAQHGDNPTPVFSFMGKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYAGIIEGIGPR 69

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           YCPSIEDK++RF +++ HQIF+EPEGL T  +YPNGIST+LP ++Q Q +R++ G E  +
Sbjct: 70  YCPSIEDKVMRFADKDSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVRSMKGFENAH 129

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQGL+AG+N++  S
Sbjct: 130 IVRPGYAIEYDFFDPRDLKQTYETKFIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYS 189

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
              +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DNAD RLT    +L
Sbjct: 190 QDKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADLRLTEKAREL 249

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN--------LSSTSISFKQDGKTRTAY 505
           G + + R  RF + I      R  L+   +   +        L  T +S +  G+     
Sbjct: 250 GLVDDARWARFNQKIDNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSREASGE----- 304

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           + L  P+ + + L ++   A         E+++I+  Y  Y  RQ  E ++    E   +
Sbjct: 305 DLLRRPEMTYELLTTLPAFAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKL 364

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           P + DY  +  LSNE+  KL+  KP  +  AS+I G+TPAA+++LL+++KK+
Sbjct: 365 PAELDYKQVKGLSNEVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKH 416


>gi|312095432|ref|XP_003148355.1| glucose inhibited division protein A [Loa loa]
 gi|307756479|gb|EFO15713.1| glucose inhibited division protein A [Loa loa]
          Length = 468

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 195/469 (41%), Positives = 264/469 (56%), Gaps = 37/469 (7%)

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
           ++ L  +F +  F  GR +TGTPARL  KTI + K   Q  D + IPFSF+T+ +    +
Sbjct: 2   NSKLSETFKRLGFKLGRFRTGTPARLFKKTIDFSKFAPQLPDRKPIPFSFLTEHVWLPHH 61

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+   +  TN     +I+++         +    GPRYCPS+E K++RF   N H+IFL
Sbjct: 62  QQLPSYLGFTNNRLAEVILKHFNECNYIRSEAN--GPRYCPSLESKVIRFPHLN-HRIFL 118

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EGL++D++YP G+S     E+Q +  R IPGLE V I   GY +EYDY+NPK+L  TL
Sbjct: 119 EHEGLDSDLIYPQGMSMTFAPEVQLEVYRCIPGLENVEISETGYGVEYDYVNPKQLQSTL 178

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           +TK + GLFLAGQINGTTGYEEAAAQG+VAGIN+A  +         RT+ YIGV+IDDL
Sbjct: 179 QTKAVEGLFLAGQINGTTGYEEAAAQGIVAGINAAASTRNKKPFVIDRTEGYIGVLIDDL 238

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           TS G  EPYRMFTSRAE R+ LRPDNAD RLT  G + G + E R   F K +  YN  R
Sbjct: 239 TSLGTSEPYRMFTSRAELRLHLRPDNADIRLTEKGYQHGAVSEHRHNHFLKMVSAYNETR 298

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPD--ARKFSS 530
            LLKS V    N     I   ++ +T    +A++ L   +     +    P    R   +
Sbjct: 299 DLLKS-VKYPMNFWRKFIPRLENARTTKVYSAFDLLCRYEIDFMEIRKAAPVELERLLEN 357

Query: 531 LVIE-RLQIESSYAAY------------------------TGRQMIEAKEIKFEEKRLIP 565
             IE RL+IE+ Y  Y                          R  ++ ++I+ E   +IP
Sbjct: 358 DEIEHRLKIEAFYHFYLDKSLIFTSLVDIQLLKCEHAFLLKSRHFMKIEQIRKECATVIP 417

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +FDYS L ++S E KE L   +P NL  AS++ G T  AL  LL ++K
Sbjct: 418 DNFDYSKLNSISAECKENLEFWRPQNLAAASRVPGATTEALIELLNFLK 466


>gi|13272341|gb|AAK17104.1|AF291051_1 cell division protein [Candidatus Carsonella ruddii]
          Length = 485

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/463 (40%), Positives = 278/463 (60%), Gaps = 15/463 (3%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAA  A+K+     +IT     +G MSCNP+IGG+GK HLV+E++   G+M   +D + I
Sbjct: 2   EAAISASKICNKIKIITSNLENLGIMSCNPSIGGIGKSHLVKELELFGGIMPEASDYSRI 61

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG---FNTEKNIIS 135
             ++LN KKG +V   R Q DR LY+  + + +  ++N+ + Q E+     F  +  I +
Sbjct: 62  HSKLLNYKKGESVHSLRYQIDRILYKNYILKILFLKKNILIEQNEINKIIRFKKKILIFN 121

Query: 136 SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR 195
            +   + + I    +++  GTF+   I+IGK  I A  +  +   S+  SF K +    +
Sbjct: 122 KLKFFNIAKI----IIVCAGTFINSKIYIGK-NIKA--LNKAEKKSISYSFKKINLFISK 174

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
           LKTGTP RLD   + + K   Q++D  +   S+  +   N  ++C IT T+ + +  I +
Sbjct: 175 LKTGTPPRLDLNYLNYKKLSVQYSDYTI---SYGKNFNFNNNVKCFITNTDNKINNFIKK 231

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           NIK+S++++   KS GPRYCPSIEDKI +F     HQIFLEPE   +  +Y NG+S +L 
Sbjct: 232 NIKNSSLFNLKFKSIGPRYCPSIEDKIFKFPNNKNHQIFLEPESYFSKEIYVNGLSNSLS 291

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
             IQ + I+ I G++K  IIR  Y I+YDY +P+ L  +L  K  + +FLAGQINGTTGY
Sbjct: 292 YNIQKKLIKKILGIKKSYIIRYAYNIQYDYFDPRCLKISLNIKFANNIFLAGQINGTTGY 351

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEA++QG VAGINSARK  KL      + +SYIGV++ DLT+ G+ EPYR+FTS+++ R+
Sbjct: 352 EEASSQGFVAGINSARKILKLPLWKPKKWNSYIGVLLYDLTNFGIQEPYRIFTSKSDNRL 411

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            LR DNA  RL  I   LGC+   + K +   I  Y F ++L+
Sbjct: 412 FLRFDNAIFRLINISYYLGCLPIVKFKYYNSLI--YKFYKNLI 452


>gi|296088516|emb|CBI37507.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/400 (42%), Positives = 251/400 (62%), Gaps = 3/400 (0%)

Query: 226 FSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           FSF  D  I   Q+ C +TRT   TH++I EN+  +  Y G +++ GPRYCPSIEDKIVR
Sbjct: 387 FSFDPDFHIEREQMCCYLTRTTKSTHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIVR 446

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F ++  HQIFLEPEG N   +Y  G ST LPE +Q   +RT+PGLE  +++RP YA+EYD
Sbjct: 447 FQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYD 506

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           ++   +   +L TK+I GLF +GQINGTTGYEEAAAQGL++GIN+AR S+    I   R 
Sbjct: 507 FLPAYQCSRSLMTKQIEGLFFSGQINGTTGYEEAAAQGLISGINAARYSDGKSLIVLERE 566

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIG +IDDL +K + EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR K +
Sbjct: 567 SSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKIY 626

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
                + +  +  L+++ ++  +L+S  T +S +    + T    L  P    + L    
Sbjct: 627 QDKQAQISQEKKRLRTVRISGGDLASDVTHLSGQPVKDSSTLESILKKPHVQYKVLDKHG 686

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                 S +  E ++I+  Y  +  RQ  + +++  ++ R +P+D DY ++  LS E +E
Sbjct: 687 FGNELLSKIEKECVEIDIKYEGFIMRQQSQLQQMARQQHRPLPEDLDYYAMTTLSLEARE 746

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           KLS ++P  + QAS++ G++PA +  LLI ++ N  K  E
Sbjct: 747 KLSKIRPQTIGQASRVGGVSPADITALLIILETNRRKAQE 786



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 18/182 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 71  NERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEV 130

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G+VAD   +Q RVLN+ +GPAVR  R Q D+  Y L M+       N+   Q 
Sbjct: 131 DALGGEIGKVADRCYLQKRVLNISRGPAVRALRAQTDKRDYALQMK-------NIVERQA 183

Query: 123 EVAGFNTEKNIISSIVMQDNSMIR-----------CSTVVLTTGTFLRGVIHIGKLKIPA 171
                +  + +++ I++  N  +              +V+LTTGTF+ G I +G+  +PA
Sbjct: 184 YCPNLSIREAMVTDILLGKNDNVEGVRTFFGMDFYAPSVILTTGTFMSGKIWVGRTSMPA 243

Query: 172 GR 173
           GR
Sbjct: 244 GR 245


>gi|313897026|ref|ZP_07830573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974473|gb|EFR39941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 397

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/392 (42%), Positives = 248/392 (63%), Gaps = 3/392 (0%)

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           MT+++   Q+ C +T TN  TH +I  N+  + + +G I+  GPRYCPS+E KI RF ++
Sbjct: 1   MTEEMPKEQVRCWLTYTNAATHEVIRVNLHRAPMANGVIEGIGPRYCPSVETKIARFPDK 60

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ+FLEPEGL+T+ +Y  G+ST+LP ++Q +F+RTI GLE   I+RPGYAIEYD  +P
Sbjct: 61  ERHQLFLEPEGLHTNELYVQGMSTSLPTDVQEEFLRTIAGLEHARIMRPGYAIEYDCFDP 120

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
             L P+L  K ++GL+  GQ NGT+GYEEAAAQGL+AGIN+AR+    + +   R+D YI
Sbjct: 121 LGLEPSLAVKGVAGLYSCGQANGTSGYEEAAAQGLIAGINAAREIAGEEPLILGRSDGYI 180

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV+IDDL +KG  EPYRM TSRAEYR+ LR DNAD RLTP+G ++G + + R  +F    
Sbjct: 181 GVLIDDLVTKGTEEPYRMMTSRAEYRLILRQDNADLRLTPVGHEIGLVSDARWAKFTAKR 240

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF--LSYPDFSIQNLFSICPDAR 526
                   LL++  LT    +   ++       RT      L   + S   L  I  D  
Sbjct: 241 DAIEAALHLLETTKLTPDAATEGRLADAGLLPLRTPMNLAALLRREGSYDVLARIF-DLP 299

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             +  V E ++I   Y  Y  +Q  +   ++  E+R IP++ DY+++ +L  E +EKL+ 
Sbjct: 300 ILADDVKEEVEITVRYDGYIRKQREQIARMERLERRRIPEEIDYAAITSLRLEAQEKLAA 359

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++P ++ QAS+I G++PA +++LL+Y++K T+
Sbjct: 360 VRPHSIGQASRISGVSPADVSVLLVYLEKLTL 391


>gi|164663473|ref|XP_001732858.1| hypothetical protein MGL_0633 [Malassezia globosa CBS 7966]
 gi|159106761|gb|EDP45644.1| hypothetical protein MGL_0633 [Malassezia globosa CBS 7966]
          Length = 411

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/385 (41%), Positives = 235/385 (61%), Gaps = 18/385 (4%)

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGD----IKSYGPRYCPSIEDKIVRFGERNGHQ 292
           Q+ C  TRT   TH I+ + ++      GD     K  GPRYCPS+E K++RF  +  H 
Sbjct: 18  QLYCFGTRTTPATHVIVHQEVQ------GDDYEMTKYTGPRYCPSLEVKVLRFAHKESHP 71

Query: 293 IFLEPEGLNT------DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ++LEPEGL T       V+YPNG+S +L  + Q + +RTIPGLE   ++RPGYA+EYD++
Sbjct: 72  VWLEPEGLTTTPQRDGHVLYPNGLSCSLSPDAQTRMVRTIPGLEHAVLLRPGYAVEYDHV 131

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P+EL PTLET++I GL +AGQINGTTGYEEA  QG++AG+N+  ++ K   +  SR+D 
Sbjct: 132 DPRELLPTLETRRIRGLAMAGQINGTTGYEEAGVQGVLAGLNAGLRAQKRRELTVSRSDG 191

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRF 464
           ++GVM+DDL  +GV+EPYRMFTSR+EYR+SLR DNAD RLTP+   +    I + R    
Sbjct: 192 FVGVMLDDLRLQGVMEPYRMFTSRSEYRLSLRADNADLRLTPLVHAVSPESITDTRLAAL 251

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
            +   + +F    L    +TS+  +S       D +T +A + +  P   IQ+L    P+
Sbjct: 252 ERVRADLDFGMQCLARTKMTSRAWASHGFQAADDVRTLSALDMMHRPHARIQDLIPFVPE 311

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
            R      +ERL  ++SY     RQ  + +  + +E   +P D  ++ L  +S+E+KE+ 
Sbjct: 312 LRGLHPHTLERLATQASYMPLLERQASDIEAFQRDEALALPVDMAFAELQGVSDEMKERF 371

Query: 585 SILKPFNLLQASKIEGMTPAALNLL 609
           S +KP  L +A +I G TPAA  +L
Sbjct: 372 SCVKPRTLGEAKRIAGCTPAAYAVL 396


>gi|157695028|gb|ABV66103.1| glucose inhibited division protein A [Rickettsiella melolonthae]
          Length = 319

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/320 (51%), Positives = 208/320 (65%), Gaps = 3/320 (0%)

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           +GK HLV+E+DAL G+M   AD AGIQ+R LN  KGPAVR  R Q DR LY+ A+++ + 
Sbjct: 1   IGKSHLVKEVDALGGIMAHAADLAGIQWRTLNASKGPAVRATRAQMDRSLYKQAIRKTLE 60

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +Q NL + Q  V     + N I  +V Q        +VVLT GTFL G IHIG  +   G
Sbjct: 61  NQANLFIFQQSVDDVILQSNRIVGVVTQMGLRFYAKSVVLTAGTFLAGKIHIGLQQAQGG 120

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R GD  +N L     +      RLKTGTP RLDG++I ++   +Q +D  L  FS++  K
Sbjct: 121 RAGDPEANFLAEKLRQLPLRIKRLKTGTPPRLDGRSINFEVLLEQSSDNPLPVFSYL-GK 179

Query: 233 ITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           I     QI C IT TN +TH II   +  S IYSG I   GPRYCPSIEDK+VRF ++  
Sbjct: 180 IEQHPTQISCFITYTNEKTHAIIRSGLDRSPIYSGVIDGIGPRYCPSIEDKVVRFADKLS 239

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLEPEGLNT  VYPNGIST+LP +IQ   I +I GLE+ +I RPGYAIEYD+ +P++
Sbjct: 240 HQIFLEPEGLNTHEVYPNGISTSLPFDIQCDLIHSIKGLEQAHITRPGYAIEYDFFDPRD 299

Query: 351 LFPTLETKKISGLFLAGQIN 370
           LFP+LE++ +  LFLAGQIN
Sbjct: 300 LFPSLESRLLENLFLAGQIN 319


>gi|18920702|gb|AAL82394.1|AF469110_1 MTO1 isoform 1 [Homo sapiens]
          Length = 595

 Score =  309 bits (792), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 252/388 (64%), Gaps = 14/388 (3%)

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN     I+++N++ ++      +  GPRYCPSIE K++RF  R  HQ++LE
Sbjct: 182 QLPCYLTHTNPRVDEIVLKNLQLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVWLE 238

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LE
Sbjct: 239 PEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLE 298

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           T  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT
Sbjct: 299 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 358

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLR 475
           + G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            
Sbjct: 359 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 418

Query: 476 SLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSS 530
           S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K++ 
Sbjct: 419 SVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTK 477

Query: 531 L--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSI 586
              + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL  
Sbjct: 478 CRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHF 537

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 538 SRPQTIGAASRIPGVTPAAIINLLRFVK 565



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 102/147 (69%), Gaps = 8/147 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSM 144
                     +T K  +S +V+ ++ +
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLPEDQL 183


>gi|119569145|gb|EAW48760.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
          Length = 594

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 251/388 (64%), Gaps = 14/388 (3%)

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++LE
Sbjct: 181 QLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVWLE 237

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LE
Sbjct: 238 PEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLE 297

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           T  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT
Sbjct: 298 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 357

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLR 475
           + G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            
Sbjct: 358 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 417

Query: 476 SLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSS 530
           S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K++ 
Sbjct: 418 SVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTK 476

Query: 531 L--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSI 586
              + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL  
Sbjct: 477 CRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHF 536

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 537 SRPQTIGAASRIPGVTPAAIINLLRFVK 564



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 8/145 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDN 142
                     +T K  +S +V++D 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLEDQ 181


>gi|332824610|ref|XP_003311452.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 3 [Pan
           troglodytes]
          Length = 595

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 251/388 (64%), Gaps = 14/388 (3%)

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN     I+++N+  ++      +  GPRYCPSIE K++RF  R  HQ++LE
Sbjct: 182 QLPCYLTHTNPRVDEIVLKNLHLNSHVKETTR--GPRYCPSIESKVLRFPNRL-HQVWLE 238

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LE
Sbjct: 239 PEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLE 298

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           T  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT
Sbjct: 299 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 358

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLR 475
           + G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            
Sbjct: 359 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 418

Query: 476 SLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSS 530
           S+LKS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K++ 
Sbjct: 419 SVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTK 477

Query: 531 L--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSI 586
              + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL  
Sbjct: 478 CRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHF 537

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 538 SRPQTIGAASRIPGVTPAAIINLLRFVK 565



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 102/147 (69%), Gaps = 8/147 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSM 144
                     +T K  +S +V+ ++ +
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLPEDQL 183


>gi|258626070|ref|ZP_05720921.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581596|gb|EEW06494.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 368

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 229/363 (63%), Gaps = 12/363 (3%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T  +YPNGIST+LP ++Q Q
Sbjct: 1   MYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQ 60

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQ
Sbjct: 61  IVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKFIHGLFFAGQINGTTGYEEAAAQ 120

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           GL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DN
Sbjct: 121 GLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDN 180

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN--------LSSTSI 493
           AD RLT    +LG + + R  RF + I      R  L+   +   +        L  T +
Sbjct: 181 ADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQETWMNPNSVGVEQLNALLKTPM 240

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEA 553
           S +  G+       ++Y   +   +F+   +     S   E+++I+  Y  Y  RQ  E 
Sbjct: 241 SREASGEDLLRRPEMTYELLTTLPVFTPALE----DSEAAEQVEIQVKYDGYIQRQQDEI 296

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++    E   +P D DY  +  LSNE+  KLS  KP  +  AS+I G+TPAA+++LL+++
Sbjct: 297 EKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGIASRISGITPAAISILLVHL 356

Query: 614 KKN 616
           KK+
Sbjct: 357 KKH 359


>gi|47219743|emb|CAG12665.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 438

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/413 (42%), Positives = 248/413 (60%), Gaps = 40/413 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y VIV+GGGHAG EAAA AA++GA T L++ K  TIG++SCNP++GG+GKG LV+EIDAL
Sbjct: 21  YHVIVVGGGHAGTEAAAAAARVGAETLLVSQKIQTIGALSCNPSLGGVGKGQLVKEIDAL 80

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GR  D AGI F +LN +KGPAV GPR Q DR+ YR  +Q E+LS   L +++G V 
Sbjct: 81  DGLCGRAGDWAGIHFSILNRRKGPAVWGPRAQLDRQHYREFIQSELLSTPRLTLLEGSVE 140

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        ++ ++ I + + S +  S+VVLTTGTFL G + +G+  +P GR+GD+
Sbjct: 141 ELLVTEAKPDEPGQHRVTGIRLANGSQVSASSVVLTTGTFLSGSLFVGQNTMPGGRIGDA 200

Query: 178 PSNSLFNSFM--KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-- 233
           PS++  +  +  +    TGRL+TGTP R+  +++          D    PFSF+      
Sbjct: 201 PSSAGLSHTLRERLGLRTGRLRTGTPPRIVKESVDLSLAVLHPPDGTPTPFSFLNKHTRC 260

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T T     +++ E++  +     D K  GPRYCPSIE +++RF  R  HQ
Sbjct: 261 KPEEQLPCHLTYTTPGVEKVVKESLHLNCHIQQDTK--GPRYCPSIESRVLRFPGRQ-HQ 317

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP--------------- 337
           ++LEPEGL ++++YP G+S  +P E+Q   IR IP L +  I  P               
Sbjct: 318 VWLEPEGLTSELLYPQGLSMTMPPEMQLSLIREIPALHRAEIHTPVRCGHSDLMHQSYLN 377

Query: 338 ---------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
                    GY ++YD++ P +L P L+ K   GLFLAGQINGTTGYEEAAAQ
Sbjct: 378 LEVSRSALSGYGVQYDFVCPTQLSPALQVKSTQGLFLAGQINGTTGYEEAAAQ 430


>gi|255026480|ref|ZP_05298466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-003]
          Length = 344

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/337 (45%), Positives = 208/337 (61%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAI
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAI 344


>gi|221136608|ref|XP_002171123.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 361

 Score =  300 bits (768), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/352 (47%), Positives = 223/352 (63%), Gaps = 3/352 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 11  MFQEKYDVIVVGAGHAGCEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 70

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN+ KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 71  EIDALGGYSGIVSDLTAIQFKMLNLSKGPAMWSPRCQSDRMRFAEEWRMMLEGTPNLDFY 130

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G  +E+N I  I       I+  TVVLT GTFL G+IHIG  +   GR G+S S 
Sbjct: 131 QEMVSGILSEENEIVGIKTSLGLEIKAKTVVLTNGTFLNGLIHIGDKQFGGGRAGESASF 190

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQI 238
            +    +K  F++GR+KTGTP R+DG+++ + K  +Q  D     FS+  +T  +T  Q 
Sbjct: 191 GITEDLLKMGFESGRMKTGTPPRVDGRSLDYSKMIEQPGDVNPSKFSYSDITKPLT-EQR 249

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EPE
Sbjct: 250 SCHMTYTSETVHDLLREGFDRSPMFNGRIKSIGPRYCPSIEDKINRFADKERHQLFVEPE 309

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           G +T  VY NG ST+LPEE+Q + +R++ G EKV   RPGYAIEYDY  P +
Sbjct: 310 GWHTCEVYVNGFSTSLPEEVQFKALRSVEGFEKVKFFRPGYAIEYDYFPPTQ 361


>gi|221061885|ref|XP_002262512.1| Glucose inhibited division protein A homologue [Plasmodium knowlesi
           strain H]
 gi|193811662|emb|CAQ42390.1| Glucose inhibited division protein A homologue,putative [Plasmodium
           knowlesi strain H]
          Length = 846

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 270/530 (50%), Gaps = 84/530 (15%)

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM--- 229
           ++ +S + S+ N   +  F+  R+KTGTP RL   +I +   E++   ER  PF F    
Sbjct: 317 QLVESSTQSISNQLREHRFEIKRMKTGTPPRLHISSIDFTSLERE-DSERENPFYFSFLN 375

Query: 230 TDKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGE 287
           ++KI  N+ + C  T TN  TH ++  ++     +   D    GPRYCPSI  K+ +F E
Sbjct: 376 SNKINKNKTLPCYKTYTNERTHELVRTHLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSE 435

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +N H I+LEPEG +  ++YPNG+S+A P   Q + + +I GLE   I+ P Y +EY Y+N
Sbjct: 436 KNKHVIWLEPEGFHNVLIYPNGLSSAFPINTQKEIVNSIRGLENAEIVFPAYDVEYYYVN 495

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD-----CICFS 402
           PK L  TLETK I GLFLAGQI GTTGYEEAA QG+VAGIN+A  S   D      +   
Sbjct: 496 PKCLNYTLETKNIKGLFLAGQICGTTGYEEAACQGIVAGINAAINSRSNDEERKEQLILK 555

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R++SYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDN D RLTPI  KLG + + R  
Sbjct: 556 RSESYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNCDIRLTPIAHKLGIVSDERMY 615

Query: 463 RFAKYIQEYNFLRSLLKSLVLTS-----KNLSSTSI--------------SFKQDGKTRT 503
              +     N L  L K L L+S     K  SS S               +F+ D K   
Sbjct: 616 ILRQKYASVNRLIFLFKKLQLSSSYEGEKKNSSDSCGTDAEHIFVKNSVEAFQTDAKKNA 675

Query: 504 AYEFLS-----------------YPDFSI--------------------QNLFSICPDAR 526
             EF S                 YP   +                    QN  +I  D  
Sbjct: 676 HLEFTSRKGNINTLYTIFRSGVEYPLHILLKKIQEVQGWNELQSSLLPEQNNIAIYMDKM 735

Query: 527 KFSSL-------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
           K   L              +E    E  Y+ Y  +Q+ E  +I+     +IP D  Y  L
Sbjct: 736 KHCGLSLDENYDLLLNCATLETACAEVKYSPYLTKQIREVDKIRDSFDLVIPPDVTYDRL 795

Query: 574 --PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK--KNTVK 619
             P LSNE  EKL+  +P  L  A++IEG+T +A+  L  YIK  KN VK
Sbjct: 796 NFPYLSNEEIEKLNKFRPRTLHDANRIEGVTMSAIYYLYYYIKGEKNKVK 845



 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 10/183 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIVIGGGH+GCEA+ ++AKL A T LIT    +IG MSCNP+IGG+GKG LV+E
Sbjct: 70  LDKKYDVIVIGGGHSGCEASHISAKLRAKTLLITQCKDSIGEMSCNPSIGGIGKGILVKE 129

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+  D +GI F++LN++KG AVRG R QADR+LY   M+  +   +NL +++
Sbjct: 130 IDALGGLMGKAIDKSGIHFKILNIRKGLAVRGHRAQADRDLYNYHMKEYMHDTKNLHILE 189

Query: 122 GEVAGFNTEKNIISSIVMQDNSMI----RCS------TVVLTTGTFLRGVIHIGKLKIPA 171
             V     E        +    +     +C+      +VVLTTGTFL GV HIGK K   
Sbjct: 190 STVQSLLIENCTSGDSPLSGRRVYGVKNKCACEFYANSVVLTTGTFLGGVCHIGKEKYHG 249

Query: 172 GRM 174
           GR+
Sbjct: 250 GRI 252


>gi|196018455|ref|XP_002118809.1| hypothetical protein TRIADDRAFT_62815 [Trichoplax adhaerens]
 gi|190578148|gb|EDV18704.1| hypothetical protein TRIADDRAFT_62815 [Trichoplax adhaerens]
          Length = 324

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/342 (46%), Positives = 216/342 (63%), Gaps = 22/342 (6%)

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           YCPSIEDKIVRF ++  HQIFLEPEG  +D+VYPNGIST+LP+ +Q +F+R+I GLE   
Sbjct: 1   YCPSIEDKIVRFKDKERHQIFLEPEGHESDLVYPNGISTSLPKNVQEKFVRSIYGLENAE 60

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           I+R GYAIEYD+I+P+EL  TLE+KKI+ LF AGQINGTTGYEEAA QG++AG N+A K 
Sbjct: 61  IVRWGYAIEYDFIDPRELKETLESKKINNLFFAGQINGTTGYEEAAGQGVIAGANAALKL 120

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
           N    I  SR+DSYIGVMI+DLT+ G  EPYRM TSRAEYRI LR DNA  RLT IG K 
Sbjct: 121 NSKQLI-LSRSDSYIGVMINDLTNFGTEEPYRMMTSRAEYRIKLRNDNAAERLTEIGKKY 179

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
           G I  ++ K +     E      L+KS  L                     Y F +  D+
Sbjct: 180 GLINAQKLKNYEDICTERTKTEDLIKSKQL--------------------VYNFKNTDDY 219

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
            I  + S   +  K    ++ ++  E+ Y  Y  R + + + +K +++ +IP+  ++  +
Sbjct: 220 -IHQIKSCFSEIAKTDDRILIKIYAENLYRNYEKRLLKDIEILKKDKELIIPRTLNFGEI 278

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             LSNE++ KL    P  +    +I+GMTP+AL  ++IY+KK
Sbjct: 279 KGLSNEIRTKLKNTSPQTIADIKRIQGMTPSALIAIIIYLKK 320


>gi|119569152|gb|EAW48767.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_h [Homo sapiens]
          Length = 384

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/352 (44%), Positives = 233/352 (66%), Gaps = 12/352 (3%)

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 5   RYCPSIESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 63

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 64  KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 123

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 124 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 183

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTRTAYEF 507
             GC+ ++R +R            S+LKS+   S    K +   SIS  +    R A + 
Sbjct: 184 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVR-ALDV 242

Query: 508 LSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +
Sbjct: 243 LKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQL 302

Query: 565 PKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K
Sbjct: 303 PKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVK 354


>gi|156095863|ref|XP_001613966.1| glucose inhibited division protein A homologue [Plasmodium vivax
           SaI-1]
 gi|148802840|gb|EDL44239.1| glucose inhibited division protein A homologue, putative
           [Plasmodium vivax]
          Length = 872

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 265/519 (51%), Gaps = 80/519 (15%)

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDKIT 234
           +S + SL N   +  F+  R+KTGTP RL  ++I +   E++ ++ E    FSF+     
Sbjct: 346 ESSTQSLSNQLRENQFEIKRMKTGTPPRLHIRSIDFTSLEREDSEAENPFYFSFLNSNKV 405

Query: 235 NRQ--IECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGH 291
           NR   + C  T TN  TH ++  ++     +   D    GPRYCPSI  K+ +F E+N H
Sbjct: 406 NRNKTLPCYKTYTNERTHELVRTHLNELPDFDCYDKLGNGPRYCPSIAKKVTKFAEKNKH 465

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            I+LEPEG +  ++YPNG+S+A P  IQ + +R+I GLE   I+ P Y +EY Y+NPK L
Sbjct: 466 IIWLEPEGFHDVLIYPNGLSSAFPISIQKRIVRSIRGLENAEIVFPAYDVEYYYVNPKCL 525

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL-----DCICFSRTDS 406
             TLETK I GLFLAGQI GTTGYEEAA QG++AGIN+A  +        +     R++S
Sbjct: 526 NYTLETKNIGGLFLAGQICGTTGYEEAACQGIIAGINAAIGARSTPGETKEQFILKRSES 585

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDN D RLTP+  KLG + + R     +
Sbjct: 586 YIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNCDMRLTPLASKLGIVSDERMYILRQ 645

Query: 467 YIQEYNFLRSLLKSLVLTSKN-------------------LSSTSISFKQDGKTRTAYEF 507
                N L  L K L L+  +                   + ++  +FK +GK     EF
Sbjct: 646 KYSSVNRLICLFKKLQLSYPSQGENPPPSDSPGVDPEHQFVKNSVEAFKPEGKNNVHLEF 705

Query: 508 LS-----------------YPDFSI--------------------QNLFSICPDARKFSS 530
            S                 YP  ++                    QN  +I  D  +   
Sbjct: 706 TSRKGNINSLYTIFRSGVEYPLHTLLRKLQEVPGCTELYSSLSPEQNNIAIYTDNMQLCG 765

Query: 531 L-------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PA 575
           L              +E    E  Y+ Y  +Q+ E  +I+      IP D  Y  L  P 
Sbjct: 766 LPLHQCGDFLLNSATLETACAEVKYSPYLTKQIREVGKIRGSFDLPIPPDLTYDRLNFPY 825

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           LSNE  EKL+  +P  L +A++IEG+T +A+  L  YIK
Sbjct: 826 LSNEEIEKLNKFRPRTLHEANRIEGVTMSAIYYLYYYIK 864



 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 9/182 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++++YDVIVIGGGH+GCEA+ ++AKL A T LIT    +IG MSCNP+IGG+GKG LV+E
Sbjct: 79  LDKNYDVIVIGGGHSGCEASHISAKLRAKTLLITQCRESIGEMSCNPSIGGIGKGILVKE 138

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+V D +GI F++LNV+KG AVRG R QADR+LY   M+  +   +NL +++
Sbjct: 139 IDALGGLMGKVIDKSGIHFKILNVRKGLAVRGHRAQADRDLYNYHMKEHMNGMKNLHILE 198

Query: 122 GEVAGFNTEK---------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             V     E            +  +  +       ++VVLTTGTFL GV HIGK K   G
Sbjct: 199 STVQSLLIENCRGGSPPSGRRVYGVKNKCACEFYANSVVLTTGTFLGGVCHIGKEKYQGG 258

Query: 173 RM 174
           R+
Sbjct: 259 RI 260


>gi|41058571|gb|AAR99269.1| glucose-inhibited division protein A [Candidatus Blochmannia
           ulcerosus]
          Length = 311

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 200/311 (64%), Gaps = 3/311 (0%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           IG MSCNP+IGG+GKGHLV+EIDA+ G+M    D +GIQFR+LN  KG AV+  R QAD+
Sbjct: 1   IGQMSCNPSIGGIGKGHLVKEIDAMGGVMASAIDQSGIQFRILNSGKGAAVKSTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLR 159
            LYR  ++R +  Q+ L ++QG V     + N II  ++ Q    I   +V+LT GTFL 
Sbjct: 61  SLYRQFIRRTLEMQDFLSILQGSVEDLIIKNNKIIGVVIPQIGIKIYSKSVILTAGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G I+IG      GR GD  S+ L  N          RLKTGT  R+  ++I +     Q+
Sbjct: 121 GRIYIGMNNFTGGRAGDLESSVLLSNKLCTLSLHMSRLKTGTSPRIHSRSINFSDMSIQY 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D+ +  FSF+ + K   +QI C IT TN +TH II  N+  S +YSG I    PRYCPS
Sbjct: 181 SDDPIPIFSFIGSAKQHPKQIPCYITHTNSKTHDIIRSNLHKSPMYSGLIAGVAPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK+ RF +R+ HQIFLEPEGL+T  +Y NGIST+LP ++Q + +++I GLE   I+RP
Sbjct: 241 IEDKVTRFSDRSAHQIFLEPEGLHTSEIYLNGISTSLPFDVQLEIVQSIRGLEHAQILRP 300

Query: 338 GYAIEYDYINP 348
           GYAIEYD+ NP
Sbjct: 301 GYAIEYDFFNP 311


>gi|99034211|ref|ZP_01314284.1| hypothetical protein Wendoof_01000922 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 302

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/277 (53%), Positives = 184/277 (66%), Gaps = 8/277 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  NTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++      
Sbjct: 88  AVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEH 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++F  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYNFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA-IY 263
           D  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y
Sbjct: 208 DRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             DI    PRYCPSIE K+ +F E++ HQIFLEPEGL
Sbjct: 268 LDDI--IAPRYCPSIEVKVNKFAEKSSHQIFLEPEGL 302


>gi|237751669|ref|ZP_04582149.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter bilis ATCC 43879]
 gi|229373035|gb|EEO23426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter bilis ATCC 43879]
          Length = 767

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/389 (42%), Positives = 235/389 (60%), Gaps = 14/389 (3%)

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +++ C +T TN +TH+II EN   + +++G I+  GPRYCPSIEDKI RF ++  HQ+FL
Sbjct: 371 KELPCFVTYTNEKTHKIIEENFYRAPLFTGQIQGVGPRYCPSIEDKINRFRDKLRHQLFL 430

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EP+  +    Y NG+ST+LP E+Q Q I +I GLE   I R GYAIEYDY  P  LF TL
Sbjct: 431 EPQTYSAGEYYVNGLSTSLPYEVQEQVIHSIEGLENAIITRYGYAIEYDYSQPTNLFHTL 490

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA------RKSNKLDCICFSRTDSYIG 409
           E++ +  L+LAGQINGTTGYEEAAAQG++AGIN+A      +  +K   +  SR +SYIG
Sbjct: 491 ESRIVKSLYLAGQINGTTGYEEAAAQGILAGINAALSILYTQGKSKRASLVLSREESYIG 550

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL +KG  EPYR+FTSRAEYR+ LR DNA  R+ P   +LG + E    +    ++
Sbjct: 551 VMIDDLVTKGTNEPYRVFTSRAEYRLLLREDNACFRMLPYSRELGLLDEEILNQLEVDLE 610

Query: 470 EYN-FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF-LSYPDFSIQNLFSICPDARK 527
                L  L +S     +NL   +   ++  + +  +   L         +  + P    
Sbjct: 611 NIEKHLPILSESYTPNKQNLERLTRIGEEGFQNKCHFGLILGRDSMKPTKMRKLDPRFSG 670

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL---IPKDFDYSSLPALSNELKEKL 584
            S+  +++LQI + Y  Y  +Q   +++IK  EK L   IP DF +  +  LS E+ EKL
Sbjct: 671 LSARALKQLQIHAKYQNYIEKQ---SEQIKRSEKNLHIEIPLDFSFEGISGLSLEVIEKL 727

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++ KP  L +A  I G+TPA+L +L ++I
Sbjct: 728 TLAKPKTLKEAKLISGITPASLEVLELHI 756



 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 108/250 (43%), Positives = 145/250 (58%), Gaps = 15/250 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+GGGHAG EA+ + AK+G  T LITH    I   SCNPA+GGLGKGHL +E+D+
Sbjct: 4   NYDIIVVGGGHAGVEASHICAKMGLQTLLITHLIDNIALASCNPAVGGLGKGHLTKEVDS 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG + D +G+Q+R+LN  KGPAVRG R Q D +LYR   +  +L+ +NL VIQG V
Sbjct: 64  LGGLMGAITDISGLQYRILNASKGPAVRGTRAQIDMDLYRKHARDILLNTKNLHVIQGNV 123

Query: 125 ----AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               +    EK     + +          +++T GTFL+G+IHIG+ K   GR G+  SN
Sbjct: 124 IEILSQTKEEKTEAIGVKLSIQKEFFAKKIIITAGTFLKGLIHIGENKSENGRAGEISSN 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER---------LIPFSFMTD 231
            L  S  +      RLKTGT  R+ G +I     EK + D           L   S +TD
Sbjct: 184 ELSESLKQLGIPLSRLKTGTCPRILGSSINHTTLEKHYGDAHYDELHNLSDLHTASLLTD 243

Query: 232 KI--TNRQIE 239
           +   TN+ IE
Sbjct: 244 EYQNTNKHIE 253


>gi|56808373|ref|ZP_00366128.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Streptococcus pyogenes M49 591]
          Length = 345

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/338 (44%), Positives = 213/338 (63%), Gaps = 4/338 (1%)

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           VRF ++  HQ+FLEPEG +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIE
Sbjct: 1   VRFADKERHQLFLEPEGRDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIE 60

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
           YD + P +L  TLETK ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   
Sbjct: 61  YDIVLPHQLRATLETKLISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILK 120

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K
Sbjct: 121 RSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWK 180

Query: 463 RFA-KYIQEYNFLRSL--LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF 519
            F  K  Q  N L+ L  +K   + + N     + FK      TA EF+  P+       
Sbjct: 181 AFEIKKNQFDNELKRLNSIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAV 240

Query: 520 S-ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
           S + P A    + +IE L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ 
Sbjct: 241 SFVGPAAEDLDAKIIELLETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIAT 300

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           E ++K   + P  + QAS+I G+ PA +++L+IY++ N
Sbjct: 301 EARQKFKKINPETIGQASRISGVNPADISILMIYLEGN 338


>gi|207092762|ref|ZP_03240549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 304

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/298 (45%), Positives = 188/298 (63%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E+D
Sbjct: 3   KESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVD 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q  
Sbjct: 63  VLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNSL 
Sbjct: 123 TESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNSLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C IT
Sbjct: 183 LNLRDLGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCFIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 243 YTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300


>gi|218460005|ref|ZP_03500096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli Kim 5]
          Length = 211

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/207 (61%), Positives = 153/207 (73%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGHLVREIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LY
Sbjct: 1   MSCNPAIGGLGKGHLVREIDAMDGLMGRVADLAGIQFRMLNRKKGAAVRGPRTQADRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           RLAM   I +   LD+++G+    +   N ++ ++M+D   ++   VVLTTGTFLRG+IH
Sbjct: 61  RLAMLAAIEATPGLDIVEGDAFDLDVVDNRVAGVIMKDGRRLKAPAVVLTTGTFLRGLIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG  K PAGR+G+ PS  L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L
Sbjct: 121 IGSDKTPAGRVGEPPSLGLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEDL 180

Query: 224 IPFSFMTDKITNRQIECGITRTNLETH 250
           +PFSFMTD IT RQIECG+T    + H
Sbjct: 181 VPFSFMTDSITTRQIECGVTPGRPKRH 207


>gi|124806770|ref|XP_001350827.1| glucose inhibited division protein A homologue, putative
           [Plasmodium falciparum 3D7]
 gi|23496956|gb|AAN36507.1|AE014851_26 glucose inhibited division protein A homologue, putative
           [Plasmodium falciparum 3D7]
          Length = 972

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/353 (41%), Positives = 204/353 (57%), Gaps = 29/353 (8%)

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           L IP  ++ +S + ++     + +F+  R+KTGTP RLD  +I +   E++   E+  PF
Sbjct: 341 LNIPFEKLIESSTKNIAQQLRENNFEIKRMKTGTPPRLDINSINFHVLERE-DTEKDYPF 399

Query: 227 SF----MTDKITNRQIECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDK 281
            F    M     N+ + C  T TNL+TH ++  N+     Y S D    GPRYCPSI  K
Sbjct: 400 YFSFLNMNKINNNKTLPCYKTYTNLKTHELVRNNLAQLPDYDSFDKFGNGPRYCPSIAKK 459

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +++F E+  H I++EPEG N  ++YPNG+S+A P  IQ   I +I GLE   I+ P Y +
Sbjct: 460 VMKFSEKKKHIIWIEPEGFNNKLIYPNGLSSAYPIHIQKDIINSIKGLENAQIVFPAYDV 519

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA----------- 390
           EY Y+NPK L  TLETK + GLFLAGQI GTTGYEEAA QG+VAGIN+A           
Sbjct: 520 EYYYVNPKCLNYTLETKNVKGLFLAGQICGTTGYEEAACQGIVAGINAALNSKKDNNKYN 579

Query: 391 ------------RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
                         +++++     R +SYIGV+I DL +KG+ EPYRMFTSRAEYR+ LR
Sbjct: 580 NNNNNENNNNHNINNDEVNKFILKRNESYIGVLIHDLINKGITEPYRMFTSRAEYRLFLR 639

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           PDN D RLTP   +LG + + R     +     N    + K +++   N +ST
Sbjct: 640 PDNCDIRLTPKANQLGIVSKERIYMLRQKYSSVNKFIYVFKKILINEDNPNST 692



 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 121/193 (62%), Gaps = 20/193 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIGGGH+GCEA+ ++AK  A T L+T    TIG MSCNP+IGG+GKG LV+E
Sbjct: 85  VKKNYDVIVIGGGHSGCEASYISAKSNAMTLLVTQNKETIGEMSCNPSIGGIGKGILVKE 144

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NLD+++
Sbjct: 145 IDALGGLMGKVIDKSGIHFKILNMKKGLAVRGHRAQADRDLYNYYMKEYLYNTPNLDILE 204

Query: 122 GEVAGF--------------------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
             V                       N +K  I  I  + +  I    V+LTTGTFL G+
Sbjct: 205 NSVQSLLIDTYEDKNNNNDNINDYNNNVKKKKIYGIKNKCSCEIYSHNVILTTGTFLGGI 264

Query: 162 IHIGKLKIPAGRM 174
            HIGK K   GR+
Sbjct: 265 CHIGKDKYIGGRI 277



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKD--FDYSSLPALSNELKEKLSILKPFNLLQAS 596
           E  Y++Y  +Q  E ++I      +IP+D  +D ++ P LSNE  EKL+  KP  L +A+
Sbjct: 886 EIKYSSYLKKQFQEIRKINDNFDLVIPRDLKYDRNNFPYLSNEEIEKLNKFKPQTLFEAN 945

Query: 597 KIEGMTPAALNLLLIYIK 614
           KIEG+T +A+N L  +IK
Sbjct: 946 KIEGVTMSAVNYLYYHIK 963


>gi|253582392|ref|ZP_04859615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fusobacterium varium ATCC 27725]
 gi|251835931|gb|EES64469.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fusobacterium varium ATCC 27725]
          Length = 363

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 142/344 (41%), Positives = 210/344 (61%), Gaps = 12/344 (3%)

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           K + +G++N H +FLE EG  T  +Y  G+S++LP ++Q   +R I GLE  +I+R  YA
Sbjct: 18  KFLVYGDKNQHHLFLEREGYETTEIYLGGLSSSLPTDVQDGMVRNISGLENAHIMRYAYA 77

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
           IEYDY+ P+E+  TLE+K I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I 
Sbjct: 78  IEYDYVPPQEIKYTLESKTIENLFLAGQINGTSGYEEAGAQGLLAGINAVRKLQGKEPII 137

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R DSYIG ++DDL SKG  EPYRMFT+R+EYR++LR DNAD RL+ IG ++G + E  
Sbjct: 138 LDRADSYIGTLVDDLVSKGTNEPYRMFTARSEYRLALREDNADLRLSKIGYEVGLLPEEE 197

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFS 514
             R  +  ++   ++  LK   +   N     +  K      +DG   T +E L  PD  
Sbjct: 198 YLRVVQKEKDVELIKEKLKENYVGPSNPRVNEVLRKCGEAELKDGT--TYFELLRRPDVK 255

Query: 515 IQNLFSICP----DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
             ++  I      +   +S     +++++  Y+ Y  R M   ++ K  E + +P+D DY
Sbjct: 256 YSDIKYIAELSDLELGDYSKDTEYQVEVQVKYSGYIERSMKMIEKHKSLENKRLPEDLDY 315

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            SL  +  E K+KL  ++P+N+ QAS+I G++PA + +LLIY+K
Sbjct: 316 DSLENIPKEAKDKLKAVRPYNIGQASRISGVSPADIQVLLIYLK 359


>gi|322380477|ref|ZP_08054675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS5]
 gi|321147096|gb|EFX41798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS5]
          Length = 290

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 137/288 (47%), Positives = 177/288 (61%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EA+ VAAK+GA   L+T     IG  SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 3   DIVVVGGGHAGIEASIVAAKMGAKVHLLTLLIENIGLASCNPAIGGLGKGHLVKEIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG ++D +G+QFR+LN  KGPAVRG R Q D +LYR   +  +L+  NL V Q  V G
Sbjct: 63  GVMGILSDLSGLQFRILNASKGPAVRGTRAQIDMDLYRQNARNLVLNTSNLSVSQEMVEG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +        + S V+LTTGTFL+G++HIG      GR G+S S  L    
Sbjct: 123 LLIENGAVVGVKSTLGKEYKASKVILTTGTFLQGLVHIGTHTSQNGRFGESASIELAKHL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                + GRLKTGT  RL G +I + + E  F D     FS  T      Q+ C IT TN
Sbjct: 183 KTLGLEIGRLKTGTCPRLAGNSIDFTELEAHFGDFPPPKFSHKTKDFNPIQLPCFITYTN 242

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +TH +I +N   + ++SG I+  GPRYCPSIEDKI RF ++  HQ+F
Sbjct: 243 SKTHALIEQNFHLAPMFSGQIEGVGPRYCPSIEDKIYRFKDKERHQLF 290


>gi|70946378|ref|XP_742910.1| glucose inhibited division protein A [Plasmodium chabaudi chabaudi]
 gi|56522147|emb|CAH76906.1| glucose inhibited division protein A homologue, putative
           [Plasmodium chabaudi chabaudi]
          Length = 862

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/307 (46%), Positives = 191/307 (62%), Gaps = 12/307 (3%)

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---TDKITN-RQIECGITRT 245
           +F+  R+KTGTP RL   +I +D  EK+   E+  PF F    ++KI N + + C  T T
Sbjct: 324 NFEIKRMKTGTPPRLCKDSINFDILEKE-GTEKKHPFYFSFLNSNKINNNKTLPCYKTYT 382

Query: 246 NLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           N+ TH ++++ +     +   D    GPRYCPSI  K+ +F E+  H I+LEPEG +  +
Sbjct: 383 NMNTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEKKKHIIWLEPEGFDNIL 442

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG+S+A P   Q + I +I GLE   I+ P Y +EY Y+NPK L  TLETK I+GLF
Sbjct: 443 IYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDVEYFYVNPKCLNYTLETKIINGLF 502

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNK------LDCICFSRTDSYIGVMIDDLTSK 418
           L+GQI GTTGYEEAA QG+VAGIN+A  S K      +     +R DSYIGV+I DL +K
Sbjct: 503 LSGQICGTTGYEEAACQGIVAGINAALNSLKKKNMSPISNFVLTRNDSYIGVLIHDLINK 562

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G+ EPYRMFTSRAEYR+ LRPDNAD RLTP   +LG   + R           N + S+ 
Sbjct: 563 GITEPYRMFTSRAEYRLYLRPDNADIRLTPKAEQLGIASKERLYILNHKYYSVNKIISVF 622

Query: 479 KSLVLTS 485
           K L L +
Sbjct: 623 KKLTLNN 629



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 122/191 (63%), Gaps = 20/191 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGH+GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EID
Sbjct: 57  KKYDVIVIGGGHSGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEID 116

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++  
Sbjct: 117 ALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNHYMKEYMFNMPNLYILENT 176

Query: 124 VAGFNTEKNII--SSIVMQDNS------------MIRCS------TVVLTTGTFLRGVIH 163
           V     E +I    S  M +N               +CS       V+LTTGTFL G+ H
Sbjct: 177 VHSLLIENSITQNDSTNMDENMEEKKKYKYVYGIKNKCSCEFYADNVILTTGTFLGGICH 236

Query: 164 IGKLKIPAGRM 174
           IGK K   GR+
Sbjct: 237 IGKDKYKGGRI 247



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK--DFDYSSLPALSNELKEKLSILKP 589
           ++E    E  Y++Y  +Q+ E  +I       IPK   +D ++ P LSNE  EKL+  +P
Sbjct: 770 ILETACAEVKYSSYLKKQITEINKINSNFNLAIPKTIKYDRNNFPYLSNEEIEKLNKFRP 829

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            NL +A+KIEG+T + +  L  YI K
Sbjct: 830 SNLDEANKIEGVTMSGIYYLYHYIMK 855


>gi|119569146|gb|EAW48761.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_b [Homo sapiens]
          Length = 354

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 140/325 (43%), Positives = 211/325 (64%), Gaps = 11/325 (3%)

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           +++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  
Sbjct: 1   MDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHL 60

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G
Sbjct: 61  VQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLG 120

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLL 478
             EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+L
Sbjct: 121 TSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVL 180

Query: 479 KSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL-- 531
           KS+   S    K +   SIS  +    R A + L Y +  + +L    P+  +K++    
Sbjct: 181 KSIEFLSSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRE 239

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKP 589
           + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P
Sbjct: 240 LAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRP 299

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             +  AS+I G+TPAA+  LL ++K
Sbjct: 300 QTIGAASRIPGVTPAAIINLLRFVK 324


>gi|254496641|ref|ZP_05109504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella drancourtii LLAP12]
 gi|254354069|gb|EET12741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella drancourtii LLAP12]
          Length = 300

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 189/296 (63%), Gaps = 2/296 (0%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +RT+ G E  +I RPGYAIEYDY +P+ L   L+TK I  LF AGQINGTTGYEEAAAQG
Sbjct: 1   MRTLKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKPIPNLFFAGQINGTTGYEEAAAQG 60

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AG+N+A +  + +  C  R ++YIGV+IDDL + G  EPYRMFTSRAEYR+ LR DNA
Sbjct: 61  IIAGMNAALQVQEKELWCPRRDEAYIGVLIDDLITCGTQEPYRMFTSRAEYRLLLREDNA 120

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVLTSKNLSSTSISFKQDGKT 501
           D RLT  G +LG +G+ R  +F+   +     ++LL  + V    N +   I        
Sbjct: 121 DLRLTAKGRELGLVGDERWYQFSAKREAIEATQALLHNTWVRVGHNDALKEILLNPMQHD 180

Query: 502 RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             A EF+  P+ + Q+L  +      +    V E+++I++ YA Y  RQ  + ++++ +E
Sbjct: 181 NRASEFIKRPEINYQHLLMLTDLGLPELPPAVSEQIEIQNKYAGYIDRQQQDIEKMRKQE 240

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
              +P+  DY+ +  LSNE+ +KL+ +KP +L QA +I G+TPAAL+LLL+++KK 
Sbjct: 241 HTALPESLDYNEVTGLSNEVIQKLTKIKPTSLAQAGRISGVTPAALSLLLVHLKKQ 296


>gi|255017479|ref|ZP_05289605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL F2-515]
          Length = 311

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 192/308 (62%), Gaps = 7/308 (2%)

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           EE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF AGQINGT+GY
Sbjct: 1   EEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGY 60

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPYR+ TSRAEYR+
Sbjct: 61  EEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRL 120

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLKSLVLTSKNLSS 490
            LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K        L  
Sbjct: 121 LLRHDNADLRLTEIGHEIGLISDERYERFLAKQSALEAEKERLEKTRIKPTAEVQAMLKE 180

Query: 491 TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQM 550
                 +DG    A + L  P+ +   +  I       +  + E+++I+  Y  Y  +  
Sbjct: 181 IGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSN 238

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G+ PA +++LL
Sbjct: 239 LQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILL 298

Query: 611 IYIKKNTV 618
           +YI++  +
Sbjct: 299 VYIEQGKI 306


>gi|260890891|ref|ZP_05902154.1| glucose-inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859444|gb|EEX73944.1| glucose-inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 377

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 212/376 (56%), Gaps = 19/376 (5%)

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +K+S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + +D +Y NG +TA+P 
Sbjct: 2   LKYSPIVTGIVSTKGPRHCPSLDRKIMNFPEKTNHQIFLEQESVESDEIYINGFTTAMPP 61

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
             Q   ++TI GLE   I+R GYA+EY+++   +L  TLETK I GL+ AG INGT+GYE
Sbjct: 62  FAQEAMLKTISGLENAKIVRYGYAVEYNFVPAHQLKLTLETKVIDGLYTAGTINGTSGYE 121

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EAA QG +AG+N+ARK      I   R++ YIGV+IDD+ +K   EPYR+  SRAEYR++
Sbjct: 122 EAACQGFMAGVNAARKILGKKEIVIDRSEGYIGVLIDDIINKKTPEPYRVLPSRAEYRLT 181

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE-------------YNFLRSLLKSLVL 483
           LR DN   RL     ++  +   +        QE             Y    +  K L +
Sbjct: 182 LRQDNIFIRLLEKAKEIRLLNAEKLTELENTCQEIENEVERLKGITVYPTKENNEKLLEI 241

Query: 484 TSKNLSSTSISFKQDGKTR-----TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             K   S S   +++ K       + +EFL+  + +  NL     +  K S L  E+++I
Sbjct: 242 VEKQNKSESSEIEKNSKNSMNSPVSGFEFLARKEINYNNLSEFV-ETVKLSDLAKEQVEI 300

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  +  R+  + ++ K  EK +IPKDFDY S+  LSN     L   +P  + QAS+I
Sbjct: 301 NAKYNVFIEREKAQIEKFKKLEKMIIPKDFDYESVKGLSNIAISGLMYGQPETIGQASRI 360

Query: 599 EGMTPAALNLLLIYIK 614
            G+T   ++LL+  +K
Sbjct: 361 SGVTYNDISLLIAILK 376


>gi|34763617|ref|ZP_00144548.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886715|gb|EAA23857.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 333

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/331 (39%), Positives = 194/331 (58%), Gaps = 13/331 (3%)

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  T
Sbjct: 1   MEREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYT 60

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LE++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ +K    + +   R DSYIG +IDD
Sbjct: 61  LESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVKKLRNEEPVILDRADSYIGTLIDD 120

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   +
Sbjct: 121 LVSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKII 180

Query: 475 RSLLKSLVLTSKNLSSTSISFK------QDGKTRTAYEFLSYPDFSIQNLFSICP----- 523
             +L    +   N     I  K      +DG   T  E L  P+ + +++  I       
Sbjct: 181 TEILVKTNVGPSNPRVNEILLKRGENPIKDGS--TLLELLRRPEVTFEDIKYISEEIKGL 238

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           D + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+K
Sbjct: 239 DLQDYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDK 298

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           L  +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 299 LKRIKPINIGQASRISGVSPADIQAILIYLK 329


>gi|225431681|ref|XP_002264011.1| PREDICTED: similar to glucose-inhibited division A family protein
           [Vitis vinifera]
          Length = 490

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 197/317 (62%), Gaps = 2/317 (0%)

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NG ST LPE +Q   +RT+PGLE  +++RP YA+EYD++   +   +L TK+I GLF +G
Sbjct: 142 NGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAYQCSRSLMTKQIEGLFFSG 201

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL++GIN+AR S+    I   R  SYIG +IDDL +K + EPYRM 
Sbjct: 202 QINGTTGYEEAAAQGLISGINAARYSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRML 261

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSR+E+R+ LR DNAD+RLTP+G ++G I +RR K +     + +  +  L+++ ++  +
Sbjct: 262 TSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKIYQDKQAQISQEKKRLRTVRISGGD 321

Query: 488 LSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           L+S  T +S +    + T    L  P    + L          S +  E ++I+  Y  +
Sbjct: 322 LASDVTHLSGQPVKDSSTLESILKKPHVQYKVLDKHGFGNELLSKIEKECVEIDIKYEGF 381

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + +++  ++ R +P+D DY ++  LS E +EKLS ++P  + QAS++ G++PA 
Sbjct: 382 IMRQQSQLQQMARQQHRPLPEDLDYYAMTTLSLEAREKLSKIRPQTIGQASRVGGVSPAD 441

Query: 606 LNLLLIYIKKNTVKLNE 622
           +  LLI ++ N  K  E
Sbjct: 442 ITALLIILETNRRKAQE 458


>gi|291333885|gb|ADD93566.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 319

 Score =  239 bits (611), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 191/308 (62%), Gaps = 10/308 (3%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           +P++ Q +F+R+I G E   I + GYA+EYD+ +P+EL  TLET+KI  L+ AGQINGTT
Sbjct: 1   MPKDCQEKFVRSIEGFESAKITQYGYAVEYDFFDPRELHETLETRKIKNLYFAGQINGTT 60

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAAAQGLVAG N+A      D     R +SY+GV+IDDL + G  EPYRMFTSR+E+
Sbjct: 61  GYEEAAAQGLVAGANAALSFLGKDPWTPGREESYLGVLIDDLVTLGTKEPYRMFTSRSEH 120

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS-STS 492
           R+ LR DNAD R+T    K+G + E R K F++   +    +  L  L L  ++    +S
Sbjct: 121 RLILREDNADQRITEKAYKVGLVSESRYKIFSEKKNKIIKEKDKLAKLFLRPEDEKIYSS 180

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNL---FSI-CPDARKFSSLVIERLQIESSYAAYTGR 548
           +  K+     +  + L  PD   Q+L   FSI  PD     + ++  ++    Y+ Y  R
Sbjct: 181 LKIKEPKSATSFLDLLKRPDLDFQDLAKAFSIETPD-----NDIVFDIETNQRYSGYIKR 235

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           QM E +++K      IP +FDYS++  LS E+ +KLS ++P  L QA +I G+TPAA++ 
Sbjct: 236 QMDEIEKMKKNRNAHIPSNFDYSNVKGLSAEITQKLSKVEPRTLAQAWRIPGITPAAISA 295

Query: 609 LLIYIKKN 616
           L++Y+K+N
Sbjct: 296 LMVYLKRN 303


>gi|328672618|gb|AEB26865.1| glucose-inhibited division protein, degenerate [Anaplasma
           phagocytophilum HZ]
          Length = 249

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 144/195 (73%), Gaps = 1/195 (0%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I    PRYCPS+E+KI RF +   HQIFLEPEGL T+ VYPNGIST+ P E+Q + +R+I
Sbjct: 48  IDVMAPRYCPSVEEKIRRFPDHKSHQIFLEPEGLETNSVYPNGISTSCPIEVQLEMLRSI 107

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE+  ++R GY +EY++I+P+EL+ TLETKKI GLF AGQINGTTGYEEAA QG+VAG
Sbjct: 108 NGLEQAVMLRHGYTVEYNFIDPRELYHTLETKKIKGLFCAGQINGTTGYEEAAGQGIVAG 167

Query: 387 INSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
            N+A       + +   R+DSYIGVMIDDL + G  EPYR+FTSRAEYR++LR DNAD  
Sbjct: 168 ANAALSLVQNQEPLVLKRSDSYIGVMIDDLVTLGTSEPYRLFTSRAEYRLTLRSDNADMC 227

Query: 446 LTPIGMKLGCIGERR 460
           LT IG     + + R
Sbjct: 228 LTEIGRAYSLVSQER 242


>gi|255550542|ref|XP_002516321.1| glucose inhibited division protein A, putative [Ricinus communis]
 gi|223544551|gb|EEF46068.1| glucose inhibited division protein A, putative [Ricinus communis]
          Length = 375

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/282 (45%), Positives = 171/282 (60%), Gaps = 2/282 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 79  IEERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHE 138

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+ AD   +Q RVLN+ +GPAVR  R Q D+  Y + +++ + S  NL + +
Sbjct: 139 VDALGGEIGKAADRCYLQKRVLNISRGPAVRALRAQTDKREYAMLLKKIVESTPNLFIRE 198

Query: 122 GEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      KN     V     M    S+V+LTTGTF+ G I +G+  +PAGR G+S S 
Sbjct: 199 AMVTDILLGKNDNVEGVRTFFGMNFYASSVILTTGTFMSGKIWVGRTSMPAGRAGESSSE 258

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+T RLKTGTPAR+D +T+ + + E Q  DE +  FSF  D  I   Q+ 
Sbjct: 259 GLTENLQRLGFETDRLKTGTPARVDIRTVDFSRLEPQHGDEEVSWFSFDPDVHIERAQMC 318

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           C +TRT   TH++I EN+  +  Y G +++ GPRYCPSIEDK
Sbjct: 319 CYLTRTTKITHQLIKENLHETPTYGGWVEAKGPRYCPSIEDK 360


>gi|301630293|ref|XP_002944256.1| PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme mnmG-like [Xenopus (Silurana) tropicalis]
          Length = 472

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 134/357 (37%), Positives = 202/357 (56%), Gaps = 24/357 (6%)

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEE----------IQHQFIRTIPGLEKVNIIRPG 338
           N HQ++L  + ++  V+  + ++ A+             + +  +R++ GLE  +I+RPG
Sbjct: 114 NQHQLWLFQQAVDDLVLEGDRVAGAVTXVGITFRSRTVVLTYALVRSMRGLENAHILRPG 173

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YAIEYDY +P+ L  + ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +      
Sbjct: 174 YAIEYDYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLYAGLNAALQCRSEAP 233

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
               R  +Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + +
Sbjct: 234 WLPGRDQAYLGVLVDDLVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVPD 293

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSI 515
            R   F +     +     LKS  +  + L+   S  +  K        ++ L  P    
Sbjct: 294 ARWNAFCRKRDAVSRETERLKSTWVNPRILAAQESERVLGKAIEHEYKLFDLLRRPGVGY 353

Query: 516 QNLFSIC------PDARK-----FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           + L ++        D  +      S  VIE+++I + YA Y  RQ  E +     E+  +
Sbjct: 354 EALMAMAGGKYASGDVSRETLGDLSVPVIEQVEIAAKYAGYIDRQKDEVQRAAHFEQLRL 413

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           P D DY  + ALS E+++KL   +P  L QAS+I G+T AA++LLL+++KK   K+ 
Sbjct: 414 PDDLDYMQVAALSIEVRQKLQKHRPETLGQASRISGVTAAAISLLLVHLKKGGFKVG 470



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 99/150 (66%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + Q  
Sbjct: 65  ALGGAMALATDESGIQFRMLNSSKGPAVRATRAQADRVLYKAAIRRMLENQHQLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153
           V     E + ++  V       R  TVVLT
Sbjct: 125 VDDLVLEGDRVAGAVTXVGITFRSRTVVLT 154


>gi|302845030|ref|XP_002954054.1| hypothetical protein VOLCADRAFT_121255 [Volvox carteri f.
           nagariensis]
 gi|300260553|gb|EFJ44771.1| hypothetical protein VOLCADRAFT_121255 [Volvox carteri f.
           nagariensis]
          Length = 686

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 4/311 (1%)

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST LPE +Q   ++T+PGLE+V ++RP YA+EYDY+   +  PTLETKK+ GLF +G
Sbjct: 337 EGFSTGLPERLQLALLQTLPGLERVKMLRPAYAVEYDYLPAHQCHPTLETKKVQGLFFSG 396

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+NGTTGYEEAA+QGLVAG+N+A ++     +   R  SY+G +IDDL +K + EPYRM 
Sbjct: 397 QLNGTTGYEEAASQGLVAGVNAAMRALGRPPVTLPRDSSYLGTLIDDLVTKDLREPYRML 456

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSR+EYR+ LR DNAD RLT +G ++G I +RR + F          ++ L +  + + +
Sbjct: 457 TSRSEYRLLLRSDNADRRLTQLGREIGLIDDRRWRLFRDKQARIEAEKARLAACRIRADS 516

Query: 488 ---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIESSYA 543
              L++ ++S      + T  E L  P      L     D   + S    E ++I+  YA
Sbjct: 517 EAALAAAALSGHAVPSSLTLEELLRRPHVHYSILERHGLDGGSELSFAEREAVEIDIKYA 576

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  +      +  + +P D DYS++  LS E +EKL+ ++P ++ QAS+I G++P
Sbjct: 577 GFIARQEKQLAAFSSKSSKPLPPDLDYSAISTLSLEAREKLNKIRPRDIGQASRIGGVSP 636

Query: 604 AALNLLLIYIK 614
           A ++ LL++++
Sbjct: 637 ADVSALLVHLE 647



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 127/217 (58%), Gaps = 1/217 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  T L+T     +G   CNPA+GG  K  LV E+DAL
Sbjct: 120 YDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDRVGWQPCNPAVGGPAKSQLVHEVDAL 179

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GR+AD   +Q RVLN  KGPAV   R Q D+  Y   M+R +  Q+ L++ +  V 
Sbjct: 180 GGEIGRMADRCYLQRRVLNRSKGPAVWALRAQTDKHEYSRTMRRVLEEQQGLEIREAMVV 239

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           G +   N  +  +        R   VVLTTGTF+ G I +G+  + AGR G++ S  L  
Sbjct: 240 GLDVGPNDEVRGVKTYFGITFRSRAVVLTTGTFMNGTIWVGRQSMSAGRAGEAASVGLTE 299

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +     F+T RLKTGTPAR+D +T+ +   E Q  +E
Sbjct: 300 ALQSLGFETDRLKTGTPARIDARTVNFSVLEPQPGEE 336


>gi|18920704|gb|AAL82395.1|AF469111_1 MTO1 isoform 2 [Homo sapiens]
          Length = 313

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/264 (47%), Positives = 169/264 (64%), Gaps = 11/264 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 37  FDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 96

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V 
Sbjct: 97  DGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVE 156

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD 
Sbjct: 157 DLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQ 216

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +  + 
Sbjct: 217 PSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKP 276

Query: 237 --QIECGITRTNLETHRIIMENIK 258
             Q+ C +T TN     I+++N++
Sbjct: 277 EDQLPCYLTHTNPRVDEIVLKNLQ 300


>gi|207108211|ref|ZP_03242373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 265

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 160/262 (61%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E+D
Sbjct: 3   KESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVD 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q  
Sbjct: 63  VLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQEM 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNSL 
Sbjct: 123 TESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNSLA 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C IT
Sbjct: 183 LNLRDLGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCFIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSG 265
            TNL TH+II +N   + ++SG
Sbjct: 243 YTNLITHQIIRDNFHRAPLFSG 264


>gi|327282748|ref|XP_003226104.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Anolis
           carolinensis]
          Length = 571

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/263 (48%), Positives = 173/263 (65%), Gaps = 11/263 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG +AAA AA+ GA T L+THK S IG MSCNP+ GG+GKGHLVRE+DAL
Sbjct: 2   YDVVVIGGGHAGAKAAAAAARGGARTLLVTHKASGIGQMSCNPSFGGIGKGHLVREVDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GR+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EI    +L V +  V 
Sbjct: 62  DGLCGRICDQSGVHYKVLNKGKGPAVWGLRAQIDRKLYKEKMQKEIFQITHLTVCEASVE 121

Query: 126 GF--------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                     +  K  +S ++++D   +   +VVLTTGTFLRG+I IG    PAGRMGD 
Sbjct: 122 DLVLTEPELDHPGKCCVSGVILEDGRKVHAGSVVLTTGTFLRGMILIGLESYPAGRMGDR 181

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR- 236
           PS  L  +     F  GRLKTGTP RL+ ++I ++  E+Q AD   +PFSF+++ +  + 
Sbjct: 182 PSIGLAQTLENLGFSLGRLKTGTPPRLEKESIDFNGLEQQTADSSPVPFSFLSEAVWIKP 241

Query: 237 --QIECGITRTNLETHRIIMENI 257
             Q+ C +T TN +  +II +N+
Sbjct: 242 EDQLSCYMTYTNPKVEQIIHDNL 264



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 148/252 (58%), Gaps = 10/252 (3%)

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPD 440
           QG++AGIN+  +         SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPD
Sbjct: 291 QGIIAGINAGLRVKGKPPFIVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRVEFRMSLRPD 350

Query: 441 NADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS----TSISF 495
           NAD+RLT  G  + GC+ + R ++ A+           LKS+  +S   +      +IS 
Sbjct: 351 NADSRLTFRGYNEAGCVSQHRYEQAAQMKAMIEEGMEALKSVQFSSTKWAQLVPEAAIS- 409

Query: 496 KQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQIESSYAAYTGRQMIE 552
            Q     +A + L Y   +++ L    PD+ +KF+    + +RL+IE+ Y  +   Q +E
Sbjct: 410 TQRCSLSSALDLLQYQGVNMEVLAKAVPDSLKKFAEWQQLADRLKIEAVYGWHVSNQRLE 469

Query: 553 AKEIKFEEKRLIPKDFDYSSLPA-LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
            +E++ +E   +P+D DY ++ A LS E++EKL   +P  +   S+I G+TPAA+  LL 
Sbjct: 470 IEEVQRDEALKLPEDLDYFAINASLSQEVREKLDSHRPQTIGAVSRIPGITPAAVVNLLR 529

Query: 612 YIKKNTVKLNEI 623
           ++K N  ++ ++
Sbjct: 530 FVKINCKRMKDV 541


>gi|253795565|ref|YP_003038661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739873|gb|ACT34208.1| putative glucose-inhibited division protein A [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 504

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 202/403 (50%), Gaps = 10/403 (2%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G ++CNPA GG  K HL+ E+  L G      DA+     VL+  +G A R  R Q D 
Sbjct: 39  VGKLACNPAFGGAAKSHLMCELACLGGKTPAAVDASAAHADVLSPNRGRAARALRLQVDS 98

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           +L++LA      +   +  ++ E    +  +  +  + + D S I+ S +V+ TGTF RG
Sbjct: 99  QLFKLATAS---ATAGVSKLKPEALSVSWRQQRVH-VALADGSWIQASALVIATGTFSRG 154

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-DKTEKQFA 219
           V H+G+  +  G++G S ++ L ++  +    T R KTGTP  +  +++ W      Q +
Sbjct: 155 VCHVGECTLALGKIGASRADCLTSALRQHGVKTRRFKTGTPPWVLKQSVRWRSAISLQSS 214

Query: 220 DERLIPFSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
             R   + F +  +     + C    T   T  +I    + ++  +G +   GP  C SI
Sbjct: 215 SFR---YCFGSRSRAAFPSLCCKTMHTRKPTSTVIASCTRWASPQAGKLLGRGPTRCTSI 271

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           E +I   G R   ++ +E EG+    VY NG  T+LP E Q   ++T+  L      + G
Sbjct: 272 ESRIASAGARP-QRLIMEAEGVAKQGVYLNGAFTSLPVEAQALALKTVGALTTAQFTKVG 330

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YA+EYD +   +L   LE  + +G+F+AGQ+ G+TGYEEA  QG VAG+N+AR+   +  
Sbjct: 331 YAVEYDVVCSNQLSRALELARSAGVFVAGQLAGSTGYEEACVQGWVAGVNAARRCQNMPL 390

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           I  S T S+ G++   +T   +  PY M       R  L+  N
Sbjct: 391 IALSFTASFAGLLTFKMTQHALKAPYSMACESVPNRARLKQRN 433


>gi|34763616|ref|ZP_00144547.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886714|gb|EAA23856.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 238

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/232 (47%), Positives = 145/232 (62%), Gaps = 5/232 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGKKVIKGIKIREGLEYRAKAVIVATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMT 230
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D+ +++ FS  T
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRT 233


>gi|291333886|gb|ADD93567.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 225

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 145/214 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGGHAGCEAAA AA++G  T LITHK  TIG MSCNPAIGG+GK HLV+EIDA D
Sbjct: 4   DIIVIGGGHAGCEAAAAAARIGVKTILITHKFETIGQMSCNPAIGGVGKSHLVKEIDAAD 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+M R AD A I  +VLN  KGPAVR  R QADRELY+ ++Q+E+ S ENL++++GEV  
Sbjct: 64  GIMARCADRAAIHLKVLNSSKGPAVRATRAQADRELYKKSVQKELKSLENLEIVEGEVTD 123

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + N I S+ + ++ +++   V+LTTGTFL G +  G      GR GD+ S  L    
Sbjct: 124 LGIQNNQIGSVTVGESKILKAQKVILTTGTFLNGKLFTGMDNNEGGRAGDNSSKKLAEKL 183

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
              DF  GRLKTGTP R+   +I W+  E+Q  D
Sbjct: 184 RNIDFSVGRLKTGTPPRIHKDSINWEILEEQKGD 217


>gi|255550540|ref|XP_002516320.1| glucose inhibited division protein A, putative [Ricinus communis]
 gi|223544550|gb|EEF46067.1| glucose inhibited division protein A, putative [Ricinus communis]
          Length = 319

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 180/296 (60%), Gaps = 12/296 (4%)

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           ++RP YA+EYD++   +   +L TKK+ GLF +GQINGTTGYEEAAAQG+++GIN+AR S
Sbjct: 1   MLRPAYAVEYDFLPAHQCSRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHS 60

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
           +    I   R  SYIG +IDDL +K + EPYR+ TSR+E+R+ LR DNAD+RLTP+G ++
Sbjct: 61  DGKPLIVLERESSYIGTLIDDLITKDLREPYRVLTSRSEHRLLLRSDNADSRLTPLGHEI 120

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYP 511
           G I +RR   +       +  +  LK++ ++   L++  T +S +    + T    L  P
Sbjct: 121 GLIDDRRWGLYQDKQARISEEKKRLKTVRISGGELAADVTCLSRQPVKGSSTLESLLKKP 180

Query: 512 DFSIQNLFSICPDARKFSSLVIER-----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
               + L     D   F + ++ R     ++I+  Y  +  RQ I+ +++  ++ R +P+
Sbjct: 181 HIQYRVL-----DKHGFGNELLSREEKECVEIDIKYEGFIIRQQIQLQQMAHQQNRPLPE 235

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           D DY ++  LS E +EKLS ++P  + QAS+I G++PA +  LLI ++ N  K  E
Sbjct: 236 DLDYYAMTTLSLEAREKLSKVRPQTIGQASRIAGVSPADITALLIILEANRRKAQE 291


>gi|62719473|gb|AAX93337.1| glucose-inhibited division protein A GidA [Lactobacillus
           sanfranciscensis]
          Length = 226

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/224 (44%), Positives = 141/224 (62%), Gaps = 4/224 (1%)

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
           N +  ++    ++    TVVL TGT  RG I+IG+L+  +G     PS  L  +  K  F
Sbjct: 2   NRVEGVITNTGAIYHAKTVVLATGTSARGQIYIGELRYSSGPNNSLPSIKLSENLEKNGF 61

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKI-TNRQIECGITRTNL 247
           +  R KTGTP R++G TI     E+Q  DE+   FSFMT   D +  + QI C +T TN 
Sbjct: 62  NLERFKTGTPPRVNGNTIDHSGIEEQPGDEKPHHFSFMTPYSDYLPVSEQISCWLTYTNP 121

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
            TH+II +N+  S +++G I   GPRYCPSIEDK+VRF +++ HQ+FLEPEG   D  Y 
Sbjct: 122 TTHQIIRDNLDRSPLFNGVIDGIGPRYCPSIEDKVVRFADKDRHQVFLEPEGRGNDEWYV 181

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           +G+S ++PEE+Q + + +I GLE   ++RPGYAIEYD I P+++
Sbjct: 182 DGMSNSMPEELQQEMLHSIKGLENAKMMRPGYAIEYDIIPPQQM 225


>gi|218659968|ref|ZP_03515898.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli IE4771]
          Length = 207

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/200 (48%), Positives = 132/200 (66%), Gaps = 1/200 (0%)

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+   R++RF  Y  E    R+ L
Sbjct: 1   GVTEPYRMFTSRAEYRLTLRADNADARLTPLGMRLGCVSSARERRFTVYQAEVEAGRAQL 60

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQ 537
            SL +T        ++   DG+ RTAY+ LSYPD+    L  + PDA       V E L+
Sbjct: 61  MSLKVTPNEARRAGLNINLDGQRRTAYDLLSYPDYDFAALRRVWPDALGAIRPTVAEALE 120

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PF++ QA+ 
Sbjct: 121 IEAGYSVYLDRQAAAIADQQRDEERRIPDDFDYSALSGLSNELKTKLSAARPFSVAQAAI 180

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           +EGMTPAA+ LLL+++++ +
Sbjct: 181 VEGMTPAAIALLLVHLRRRS 200


>gi|325116388|emb|CBZ51941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           related [Neospora caninum Liverpool]
          Length = 819

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/249 (41%), Positives = 145/249 (58%), Gaps = 11/249 (4%)

Query: 165 GKLKIPAGRMGDSP----SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
           G    PA R   SP    ++ L  S     F  GR KTGTPARL   ++ +   ++Q +D
Sbjct: 353 GSACSPARREESSPQEKSASELSASLRSLGFALGRFKTGTPARLYRHSVDFGSLQEQPSD 412

Query: 221 ERLIPFSFMTD-----KITNRQIECGITRTNLETHRIIMENIKHSAIYSGD--IKSYGPR 273
               PFSF+       K+    + C +T TN ETH I+  ++     +SG    +  GPR
Sbjct: 413 RSPSPFSFLNSPSRLLKVHPSTVSCHLTYTNRETHAIVRSHLDELPEHSGGEGRRGLGPR 472

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           YCPSI  K++RF +R  H ++LEPEG ++ ++YPNG+S A     Q   +R+I GLE V 
Sbjct: 473 YCPSIATKVLRFPDRPRHAVWLEPEGRDSPLIYPNGLSGAFSPATQLALLRSIKGLENVE 532

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           +  P Y +EYD++ P  L  +LETK ++GLFLAGQ+ GTTGYEEAAA GL+AG N+A ++
Sbjct: 533 MSAPAYDVEYDFVWPSSLSISLETKAVAGLFLAGQVIGTTGYEEAAAMGLLAGWNAALRA 592

Query: 394 NKLDCICFS 402
            +    C S
Sbjct: 593 LRDKTRCAS 601



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 4/120 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV V+G GHAG EAA  +A++GA T L+T    T+G +SCNP+IGG+GKG LV E+DA 
Sbjct: 42  FDVCVVGAGHAGLEAALASARVGALTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDAF 101

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GR AD A I +RVLN  +GPA  G R Q DR++Y+  +  E+  +    V +GE A
Sbjct: 102 GGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRKIYKRVVGNEVRDR----VARGEFA 157



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 15/108 (13%)

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           I  +R    IGV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G + +
Sbjct: 693 ISLNREKFLIGVCAHDLTQTGVEEPYRMFASRSECRLSTRPDNADFRCIDTALRGGIVRD 752

Query: 459 -------RRQKRFAKYIQEYNFLR------SLLKSLVLTSKNLSSTSI 493
                  RR+++ A+ +   +FLR      S  +S +L+S     +S+
Sbjct: 753 AERIESTRRRRQKAESL--LHFLRPRFDVVSCKRSFLLSSTAYPVSSL 798


>gi|258626071|ref|ZP_05720922.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581597|gb|EEW06495.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 253

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 131/217 (60%), Gaps = 3/217 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTII---WDKT 214
           +L +   +  F   RLKTGTP  L    +I   W ++
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPHVLTPIVLISRFWKRS 218


>gi|167951233|ref|ZP_02538307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 240

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 122/193 (63%)

Query: 17  GCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA 76
           G EAA  AA++GA T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL G+M    D  
Sbjct: 6   GTEAALAAARMGARTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEVDALGGVMAHATDLG 65

Query: 77  GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS 136
           GIQFR+LN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q  V     E+N +  
Sbjct: 66  GIQFRILNSRKGPAVRATRAQADRLRYKAAIRHTLENQPNLQLFQQAVDDLLVEQNRVVG 125

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRL 196
           +  Q     R   VVLT GTFL G IHIG      GR GD P+N+L     +  F   RL
Sbjct: 126 VTTQMGLKFRSRAVVLTVGTFLSGRIHIGLSNHQGGRAGDPPANALAQRLREQPFTVERL 185

Query: 197 KTGTPARLDGKTI 209
           KTGTP R+DG+TI
Sbjct: 186 KTGTPPRIDGRTI 198


>gi|7145094|gb|AAA24250.2| 21K protein [Escherichia coli]
 gi|223849|prf||1002215C protein 21kD
          Length = 196

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 118/190 (62%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGR 195
             +     GR
Sbjct: 187 LRELPLRVGR 196


>gi|205371920|ref|ZP_03224740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus coahuilensis m4-4]
          Length = 283

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 161/266 (60%), Gaps = 7/266 (2%)

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK   L+ AGQINGT+GYEEAA QGL+AG+N+A  +   D +  SR+D+YIGV+IDDL +
Sbjct: 13  KKYKNLYTAGQINGTSGYEEAAGQGLIAGLNAALNALGKDQLILSRSDAYIGVLIDDLIT 72

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI----QEYNF 473
           KG  EPYR+ TSRAEYR+ LR DNAD RLT IG ++G I + R  RF +      +E   
Sbjct: 73  KGTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGHRVGLISDERYDRFLEKKRLIEEEMAR 132

Query: 474 LRSL-LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           L S+ +K  V T   +     S  +DG    A + L  P+   +++  +     + +  +
Sbjct: 133 LSSIRIKPTVATQTLIREVGGSELKDGI--LASDLLKRPEMEYRHIEQLTASTVELTDDI 190

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  + + +   +K  E + IP   DY ++  L++E ++KL  ++P ++
Sbjct: 191 KEQVEIQLKYEGYIEKSLQQVDRLKKMENKKIPDLIDYDAINGLASEARQKLKEVRPLSI 250

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            QAS+I G+ PA +++LL+YI++  V
Sbjct: 251 AQASRISGVNPADISILLVYIEQGKV 276


>gi|237834887|ref|XP_002366741.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           ME49]
 gi|211964405|gb|EEA99600.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           ME49]
          Length = 1405

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 157/301 (52%), Gaps = 60/301 (19%)

Query: 149 TVVLTTGTFLRGVIHIGK-LKIPAGRMGDS---------PSNS----------------- 181
           T+V+T GTFL+G    G  + + AGR+G +         PS+S                 
Sbjct: 570 TIVVTAGTFLKGKCSTGTTVAVDAGRLGSAFPSSFCSPIPSSSVSAVSTGSSVFERKERS 629

Query: 182 -------------------------LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
                                    L  S        GR KTGTPARL   +I + + ++
Sbjct: 630 IRGGKRPCSQLAETEALSSEQSASELAASLRDLGLPMGRFKTGTPARLYRHSIDFSRLQE 689

Query: 217 QFADERLIPFSFMTDKITNRQ-----IECGITRTNLETHRIIMENIKHSAIYSGD--IKS 269
           Q   E   PFSF+      R+     + C +T TN ETH I+  +++    +SG    + 
Sbjct: 690 Q-PSECPSPFSFLHSPSRLRELRPVTVSCFLTYTNRETHEIVRRHLEELPRHSGGEGRRG 748

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSI  K++RF +R  H ++LEPEGL++ ++YPNG+S A     Q   +R+I GL
Sbjct: 749 LGPRYCPSIATKVLRFPDRPRHAVWLEPEGLDSALIYPNGLSGAFSPPTQLSLLRSIRGL 808

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E V +  P Y +EYD++ P  L  +LETK ++GLF+AGQ+ GTTGYEEAAA GL+AG N+
Sbjct: 809 ENVEMAAPAYDVEYDFVVPASLSISLETKTVAGLFVAGQVLGTTGYEEAAAMGLLAGWNA 868

Query: 390 A 390
           A
Sbjct: 869 A 869



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV V+G GHAG EAA  +A++GAST L+T    T+G +SCNP+IGG+GKG LV E+DAL
Sbjct: 330 FDVCVVGAGHAGLEAALASARVGASTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDAL 389

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            G +GR AD A I +RVLN  +GPA  G R Q DRELY+  + RE+  QE +D
Sbjct: 390 GGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRELYKGVVTREV--QERVD 440



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 35/58 (60%)

Query: 399  ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
            I  SR    +GV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G +
Sbjct: 1004 ISLSREKFLLGVCAHDLTQIGVQEPYRMFASRSECRLSTRPDNADLRCIDTALRGGIV 1061


>gi|221503461|gb|EEE29152.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           VEG]
          Length = 1408

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 157/301 (52%), Gaps = 60/301 (19%)

Query: 149 TVVLTTGTFLRGVIHIGK-LKIPAGRMGDS---------PSNS----------------- 181
           T+V+T GTFL+G    G  + + AGR+G +         PS+S                 
Sbjct: 570 TIVVTAGTFLKGKCSTGTTVAVDAGRLGSAFPSSFCSPIPSSSVSAVSTGSSVFERKERS 629

Query: 182 -------------------------LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
                                    L  S        GR KTGTPARL   +I + + ++
Sbjct: 630 IRGGKRPCSQLAETEALSSEQSASELAASLRDLGLPMGRFKTGTPARLYRHSIDFSRLQE 689

Query: 217 QFADERLIPFSFMTDKITNRQ-----IECGITRTNLETHRIIMENIKHSAIYSGD--IKS 269
           Q   E   PFSF+      R+     + C +T TN ETH I+  +++    +SG    + 
Sbjct: 690 Q-PSECPSPFSFLHSPSRLRELRPVTVSCFLTYTNRETHEIVRRHLEELPRHSGGEGRRG 748

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSI  K++RF +R  H ++LEPEGL++ ++YPNG+S A     Q   +R+I GL
Sbjct: 749 LGPRYCPSIATKVLRFPDRPRHAVWLEPEGLDSALIYPNGLSGAFSPPTQLSLLRSIRGL 808

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E V +  P Y +EYD++ P  L  +LETK ++GLF+AGQ+ GTTGYEEAAA GL+AG N+
Sbjct: 809 ENVEMAAPAYDVEYDFVVPASLSISLETKTVAGLFVAGQVLGTTGYEEAAAMGLLAGWNA 868

Query: 390 A 390
           A
Sbjct: 869 A 869



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV V+G GHAG EAA  +A++GAST L+T    T+G +SCNP+IGG+GKG LV E+DAL
Sbjct: 330 FDVCVVGAGHAGLEAALASARVGASTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDAL 389

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            G +GR AD A I +RVLN  +GPA  G R Q DRELY+  + RE+  QE +D
Sbjct: 390 GGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRELYKGVVTREV--QERVD 440



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 35/58 (60%)

Query: 399  ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
            I  SR    +GV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G +
Sbjct: 1004 ISLSREKFLLGVCAHDLTQIGVQEPYRMFASRSECRLSTRPDNADLRCIDTALRGGIV 1061


>gi|289808379|ref|ZP_06539008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 190

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 113/174 (64%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180


>gi|58257970|gb|AAW69380.1| glucose-inhibited division protein [Hydrogenobacter
           hydrogenophilus]
          Length = 156

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/155 (54%), Positives = 106/155 (68%), Gaps = 7/155 (4%)

Query: 197 KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-------QIECGITRTNLET 249
           KTGTPARLD +TI +   E    DE    FSF TD +          Q+ C IT T  +T
Sbjct: 1   KTGTPARLDKRTIDFSALEVAPGDEPPPKFSFWTDPVGTYWFSKGKPQVNCWITYTTPKT 60

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H II +N+  +A+Y G IK  GPRYCPSIEDK+V+F ++  HQIFLEPEG +T  +YPNG
Sbjct: 61  HEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFPDKERHQIFLEPEGWDTIEIYPNG 120

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           +ST+LPEEIQ +  R+IPGLEKV +IRP +AIEY+
Sbjct: 121 LSTSLPEEIQWELYRSIPGLEKVELIRPAHAIEYE 155


>gi|167951232|ref|ZP_02538306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 158

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 99/124 (79%)

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +  S +++G I+  GPRYCPSIEDK+VRF +++ HQIF+EPEGL+T  VYPNGIST+LP 
Sbjct: 1   MSRSPLFTGVIEGTGPRYCPSIEDKVVRFADKDSHQIFIEPEGLDTHEVYPNGISTSLPF 60

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           ++Q Q +R++ G  K +I RPGYAIEYD+ +P+EL  +LET  I+GLF AGQINGTTGYE
Sbjct: 61  DVQLQLVRSMKGFAKAHITRPGYAIEYDFFDPRELKSSLETNHIAGLFFAGQINGTTGYE 120

Query: 377 EAAA 380
           EAA 
Sbjct: 121 EAAG 124


>gi|213583207|ref|ZP_03365033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 165

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/159 (54%), Positives = 106/159 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
               E + +   V Q     R   VVLT GTFL G IHI
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHI 165


>gi|260890890|ref|ZP_05902153.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859443|gb|EEX73943.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 264

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 4/249 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EAA VAA+ G  TAL T     I  MSCNP++GG GK HLV E+ 
Sbjct: 2   KNYDIIVVGAGHAGVEAALVAARHGLKTALFTIYLDNIAMMSCNPSVGGPGKSHLVSELG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  I  QENLD++QG 
Sbjct: 62  MLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYWYRIKMREIIEKQENLDLVQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V     E   +  +  +DN  I+     VVL TGTFL G   +G +K  +GR G+  S  
Sbjct: 122 VVDLIVENKKVMGV--EDNLGIKYGAKAVVLCTGTFLGGEYVMGDVKYSSGRQGEPASVD 179

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +  +++ F+  R +T TP R+   +I + KTE+   +++   FS+ T K   R  + G
Sbjct: 180 LPDRLVEYGFELDRYQTATPPRIAKSSIDFSKTEELKGEDKPRYFSYETKKNIIRLYQLG 239

Query: 242 ITRTNLETH 250
           +   +L+ +
Sbjct: 240 LHSQHLKQY 248


>gi|153827656|ref|ZP_01980323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MZO-2]
 gi|149737869|gb|EDM52774.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MZO-2]
          Length = 174

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 107/165 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           Q  V     E + I  +V Q         VVLT GTFL G IHIG
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIG 166


>gi|68061731|ref|XP_672866.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56490284|emb|CAI01577.1| hypothetical protein PB300279.00.0 [Plasmodium berghei]
          Length = 378

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 123/199 (61%), Gaps = 20/199 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGH GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EID
Sbjct: 44  KKYDVIVIGGGHGGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEID 103

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++  
Sbjct: 104 ALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILENT 163

Query: 124 VAGFNTEKNII--SSIVMQDNSMI--------RCS------TVVLTTGTFLRGVIHIGKL 167
                 E ++    S  M++            +CS       V+LTTGTFL G+ HIGK 
Sbjct: 164 AHSLLIENSMTRNDSTNMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGICHIGKD 223

Query: 168 KIPAGR----MGDSPSNSL 182
           K   GR    +G    N L
Sbjct: 224 KYKGGRIKRILGKGKDNQL 242



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL-IPFSFMTDKITN-RQIECGITRTNL 247
           +F+  R+KTGT  RL   +I +D  EK+  +++    FSF+ DKI N + +    T T L
Sbjct: 307 NFEIKRMKTGTRPRLCKNSINFDILEKEGTEKKHPFYFSFLNDKIHNSKTLPSYKTYTKL 366

Query: 248 ETHRIIME 255
           +TH ++++
Sbjct: 367 KTHELVIK 374


>gi|255025464|ref|ZP_05297450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-003]
          Length = 255

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 144/249 (57%), Gaps = 7/249 (2%)

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPYR+ TSRAEYR
Sbjct: 1   YEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYR 60

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRF-----AKYIQEYNFLRSLLKSLVLTSKNLS 489
           + LR DNAD RLT IG ++G I + R +RF     A   ++    ++ +K        L 
Sbjct: 61  LLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLK 120

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQ 549
                  +DG    A + L  P+ +   +  I       +  + E+++I+  Y  Y  + 
Sbjct: 121 EIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKS 178

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
            ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G+ PA +++L
Sbjct: 179 NLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISIL 238

Query: 610 LIYIKKNTV 618
           L+YI++  +
Sbjct: 239 LVYIEQGKI 247


>gi|258642561|gb|ACV85893.1| mitochondrial translation optimization protein [Aspergillus flavus]
 gi|258642565|gb|ACV85895.1| mitochondrial translation optimization protein [Aspergillus flavus]
 gi|258642593|gb|ACV85909.1| mitochondrial translation optimization protein [Aspergillus oryzae]
 gi|258642595|gb|ACV85910.1| mitochondrial translation optimization protein [Aspergillus
           parasiticus]
 gi|258642597|gb|ACV85911.1| mitochondrial translation optimization protein [Aspergillus
           parasiticus]
 gi|258642601|gb|ACV85913.1| mitochondrial translation optimization protein [Aspergillus
           subolivaceus]
 gi|258642619|gb|ACV85922.1| mitochondrial translation optimization protein [Aspergillus wentii]
          Length = 171

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKKYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642559|gb|ACV85892.1| mitochondrial translation optimization protein [Aspergillus
           cristatus]
 gi|258642603|gb|ACV85914.1| mitochondrial translation optimization protein [Aspergillus
           tamarii]
          Length = 171

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKRYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642549|gb|ACV85887.1| mitochondrial translation optimization protein [Aspergillus
           brunneo-uniseriatus]
 gi|258642569|gb|ACV85897.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
 gi|258642571|gb|ACV85898.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
 gi|258642573|gb|ACV85899.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
          Length = 171

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----NI------ISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L +++G+VA     K    NI      I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLATEGLSIVEGKVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642583|gb|ACV85904.1| mitochondrial translation optimization protein [Emericella
           nidulans]
          Length = 172

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 11/171 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRE
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRE 60

Query: 102 LYRLAMQREILSQENLDVIQGEVA-----------GFNTEKNIISSIVMQDNSMIRCSTV 150
           LY++ M+ E+L+ ENL +++G+VA           G       I  + ++   +I  S V
Sbjct: 61  LYKIYMREELLATENLSIVEGKVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           V+TTGTFL G IHIG    P+GR+G++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 VITTGTFLGGEIHIGLKAYPSGRIGEAATFGLSKSLREAGFQLGRLKTGTP 171


>gi|258642575|gb|ACV85900.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
          Length = 171

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDRAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----NI------ISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L +++G+VA     K    NI      I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLATEGLSIVEGKVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642557|gb|ACV85891.1| mitochondrial translation optimization protein [Aspergillus
           clavatus]
          Length = 171

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 109/170 (64%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FRVLN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDRAGIMFRVLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----NI------ISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+++ E L +++G+VA     K    N+      I  + ++   +I    VV
Sbjct: 61  LYKTYMQEELVATEGLSIVEGKVADIVVSKEGVENVPGAQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLHEAGFQLGRLKTGTP 170


>gi|258642563|gb|ACV85894.1| mitochondrial translation optimization protein [Aspergillus flavus]
          Length = 171

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 107/170 (62%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+ N  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRIPNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKKYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642581|gb|ACV85903.1| mitochondrial translation optimization protein [Emericella
           nidulans]
          Length = 172

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 108/171 (63%), Gaps = 11/171 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRE
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRE 60

Query: 102 LYRLAMQREILSQENLDVIQGEVA-----------GFNTEKNIISSIVMQDNSMIRCSTV 150
           LY+  M+ E+L+ ENL +++G+VA           G       I  + ++   +I  S V
Sbjct: 61  LYKNYMREELLATENLSIVEGKVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           V+TTGTFL G IHIG    P+GR+G++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 VITTGTFLGGEIHIGLKAYPSGRIGEAATFGLSKSLREAGFQLGRLKTGTP 171


>gi|99034142|ref|ZP_01314238.1| hypothetical protein Wendoof_01000970 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 256

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 16/244 (6%)

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           S K +     RTDSYIGVMIDDL  KGV+E YR+FTSRAEYR+++R DNAD RLT  G  
Sbjct: 8   SEKKESFVLHRTDSYIGVMIDDLVIKGVIELYRLFTSRAEYRLAIRSDNADRRLTQKGYD 67

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           +  +   R       ++    L   L SL +T + L S  I    DG  +TA + LSYP+
Sbjct: 68  ISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPN 127

Query: 513 FSIQNLFSICPDARKFSSL----------------VIERLQIESSYAAYTGRQMIEAKEI 556
                L  I P+    +                  + E ++IE+ Y  Y  RQ  + K +
Sbjct: 128 IDWNKLQEIWPELSSVTRWNGKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFL 187

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + E    IP +F+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++  
Sbjct: 188 REEINTQIPINFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNR 247

Query: 617 TVKL 620
             K+
Sbjct: 248 KTKV 251


>gi|258642605|gb|ACV85915.1| mitochondrial translation optimization protein [Aspergillus
           terreus]
          Length = 171

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 105/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV----------MQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K  I  I           ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTEGLSIVEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|258642585|gb|ACV85905.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNQSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     KN           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSILEGKVADIVVSKNEVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|289805950|ref|ZP_06536579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 157

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           GD PS  L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   
Sbjct: 1   GDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQ 60

Query: 235 N-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           + +Q+ C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI
Sbjct: 61  HPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQI 120

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           FLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G
Sbjct: 121 FLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQG 155


>gi|313896922|ref|ZP_07830469.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974369|gb|EFR39837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 237

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 126/227 (55%), Gaps = 4/227 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAG EAA  AA+LG  T  +T     I  M CNP++GG GK HLVREIDAL
Sbjct: 11  YDIIVVGAGHAGVEAALAAARLGRRTLCVTLSLDNIAMMPCNPSVGGPGKSHLVREIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + +  NLDV Q  V 
Sbjct: 71  GGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTPNLDVRQLLVT 130

Query: 126 GFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              +E+      ++ I  +    +    V+L TGT+LRG I +G+     G  G  P+  
Sbjct: 131 ELLSEETEDGRRVTGICCETGEQLAARAVILATGTYLRGRIILGETIYDGGPNGQRPAMQ 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
           L +S         R KTGTPAR+D +T+ + +T+ Q       PF  
Sbjct: 191 LSDSLRALGLRLMRFKTGTPARVDARTVDFARTQVQEGRRARRPFPL 237


>gi|258642553|gb|ACV85889.1| mitochondrial translation optimization protein [Aspergillus
           carbonarius]
          Length = 171

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L  E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLGTEGLSILEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GR+G++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLNAYPSGRLGEAATFGLSKSLRDAGFQLGRLKTGTP 170


>gi|258642617|gb|ACV85921.1| mitochondrial translation optimization protein [Aspergillus
           versicolor]
          Length = 171

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNQSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSILEGKVADIVVSKDEVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642551|gb|ACV85888.1| mitochondrial translation optimization protein [Aspergillus
           candidus]
 gi|258642587|gb|ACV85906.1| mitochondrial translation optimization protein [Aspergillus niger]
 gi|258642599|gb|ACV85912.1| mitochondrial translation optimization protein [Aspergillus
           phoenicis]
 gi|258642613|gb|ACV85919.1| mitochondrial translation optimization protein [Aspergillus usamii]
          Length = 171

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642589|gb|ACV85907.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGAMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642611|gb|ACV85918.1| mitochondrial translation optimization protein [Aspergillus
           tubingensis]
          Length = 171

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELRGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|312082549|ref|XP_003143490.1| glucose inhibited division protein A [Loa loa]
 gi|307761348|gb|EFO20582.1| glucose inhibited division protein A [Loa loa]
          Length = 160

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 1/121 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  A +  A T L+T++  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 17  TYDVIVIGGGHAGCEAATAATRCSAHTLLLTNRKDTIGEMSCNPSFGGVGKGHLIREVDA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVIQGE 123
           LDGL GR+ D A I +  LN  +GPAV G R Q DR+LY+  MQ EIL+  E LDV++  
Sbjct: 77  LDGLCGRICDKAAINYHALNSSQGPAVLGLRAQIDRKLYKQHMQHEILNCTEGLDVMERT 136

Query: 124 V 124
           V
Sbjct: 137 V 137


>gi|258642609|gb|ACV85917.1| mitochondrial translation optimization protein [Aspergillus
           terricola]
          Length = 171

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV----------MQDNSMIRCSTVV 151
           LY+  MQ E+   + L + +G+VA     K  I  I           ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTQGLSIAEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATLGLSKSLREAGFQLGRLKTGTP 170


>gi|58257980|gb|AAW69385.1| glucose-inhibited division protein [Thermocrinis ruber DSM 12173]
          Length = 131

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/126 (54%), Positives = 92/126 (73%), Gaps = 7/126 (5%)

Query: 226 FSFMTDKITN-------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
           FSF T+ + +        Q+ C IT T  +TH II +N+  +A+Y G IK  GPRYCPSI
Sbjct: 5   FSFWTEPVGSYWFPPGKEQVLCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSI 64

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           EDK+V+F +++ HQ+FLEPEGL+T  VYPNG+ST+LPEE+Q +  R IPGLEKV +IRP 
Sbjct: 65  EDKVVKFADKDRHQVFLEPEGLDTIEVYPNGLSTSLPEEVQWELYRPIPGLEKVELIRPA 124

Query: 339 YAIEYD 344
           +AIEY+
Sbjct: 125 HAIEYE 130


>gi|258642579|gb|ACV85902.1| mitochondrial translation optimization protein [Aspergillus
           japonicus]
          Length = 171

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L        F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKPLRDAGFTLGRLKTGTP 170


>gi|258642547|gb|ACV85886.1| mitochondrial translation optimization protein [Aspergillus
           awamori]
          Length = 171

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 104/170 (61%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ ++   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEDLQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642555|gb|ACV85890.1| mitochondrial translation optimization protein [Aspergillus
           carbonarius]
          Length = 171

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L  E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLGTEGLSILEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IH G    P+GR+G++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHTGLNAYPSGRLGEAATFGLSKSLRDAGFQLGRLKTGTP 170


>gi|258642591|gb|ACV85908.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 102/170 (60%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+   Q E+   E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYTQEELQGTEGLSIVEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642567|gb|ACV85896.1| mitochondrial translation optimization protein [Aspergillus
           foetidus]
          Length = 171

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 101/170 (59%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK----------NIISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           + TGTFL G IHIG    P GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 IATGTFLGGEIHIGLEAYPLGRMGEAATFGLSKSLRDAGFTLGRLKTGTP 170


>gi|258642607|gb|ACV85916.1| mitochondrial translation optimization protein [Aspergillus
           terreus]
          Length = 171

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GK  ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKWTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV----------MQDNSMIRCSTVV 151
           LY+  MQ E+   + L + +G+VA     K  I  I           ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTQGLSIAEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 170


>gi|58257976|gb|AAW69383.1| glucose-inhibited division protein [Hydrogenothermus marinus]
          Length = 160

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 8/158 (5%)

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--------TNRQIECGITRTN 246
           ++KTGTPARLD  TI W   E+   DE    FSF T+ +           Q+ C IT TN
Sbjct: 2   QIKTGTPARLDKNTINWSVLEEAPGDEIPPKFSFWTEPVGSYFFKKGQKDQVPCYITYTN 61

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II  N+  +A+Y G I   GPRYCPSIEDKIV+F  +  H ++LEPE  +   +Y
Sbjct: 62  EKTHEIIKNNLHRTALYGGAITGVGPRYCPSIEDKIVKFEGKPRHTVWLEPETRDGISIY 121

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           PNG+ST+LPEEIQ +  R+I GLE V +++P +AIEY+
Sbjct: 122 PNGLSTSLPEEIQWEMYRSIKGLENVVLLKPAHAIEYE 159


>gi|258642577|gb|ACV85901.1| mitochondrial translation optimization protein [Aspergillus
           glaucus]
          Length = 171

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 109/170 (64%), Gaps = 10/170 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN ++GPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGIMIREVDAMDGVAGRIIDKAGIMFRMLNRRQGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGF--NTE--------KNIISSIVMQDNSMIRCSTVV 151
           LY+  MQ+E++  E L +++G+VA    +TE        +  I  + ++   +I    VV
Sbjct: 61  LYKNYMQQELIGTEGLSIVEGKVADIVVSTEGVEDIPGAQGKIVGVKLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           +TTGTFL G IHIG     +GRMG++ +  L  S     F  GRLKTGTP
Sbjct: 121 ITTGTFLGGEIHIGLDVFSSGRMGEAATFGLSKSLHDAGFQLGRLKTGTP 170


>gi|289668144|ref|ZP_06489219.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 159

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 5/152 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   ++G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIESVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GF-----NTEKNIISSIVMQDNSMIRCSTVVL 152
                   +E + +  ++ Q        +VVL
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFEAPSVVL 159


>gi|258642615|gb|ACV85920.1| mitochondrial translation optimization protein [Aspergillus
           versicolor]
          Length = 172

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 108/171 (63%), Gaps = 11/171 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI F+VLN  KG AV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIVDKAGIMFKVLNRSKGQAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIIS-----------SIVMQDNSMIRCSTV 150
           LY+  M+ E+LS E L +++G+VA     K+ I+            + ++   +I  + V
Sbjct: 61  LYKNYMREELLSTEGLSILEGKVADIVVSKDDIAAGPAAPAGKIVEVRLESGEVIPTNRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           V+TTGTFL G I IG    P+GR+G++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 VITTGTFLGGEIQIGLKVFPSGRIGEAATFGLSKSLREAGFQLGRLKTGTP 171


>gi|258642545|gb|ACV85885.1| mitochondrial translation optimization protein [Aspergillus
           aculeatus]
          Length = 172

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 11/171 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR  D AG+ FR LN  KGP V GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRTIDRAGVMFRTLNRSKGPTVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTV 150
           LY+  M  E+ S E L +++G+V      K             I  + ++   +I  S V
Sbjct: 61  LYKKYMLEELSSTEGLSIVEGKVGDIVVSKEGVEDVPGMAQGKIVGVRLESGEVIATSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           V+TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP
Sbjct: 121 VITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTP 171


>gi|213022560|ref|ZP_03337007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 136

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 72/127 (56%), Positives = 90/127 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMIFQQAVE 126

Query: 126 GFNTEKN 132
               E +
Sbjct: 127 DLIVEND 133


>gi|325917200|ref|ZP_08179427.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325536590|gb|EGD08359.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 228

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/119 (63%), Positives = 89/119 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRRIVEAQPNLTVFQAAV 126


>gi|58699192|ref|ZP_00374004.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534288|gb|EAL58475.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 231

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 16/226 (7%)

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +   R       ++ 
Sbjct: 1   MIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLES 60

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
              L   L SL +T + L S  I    DG  +TA + LSYP+     L  I P+    + 
Sbjct: 61  IKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSVTR 120

Query: 531 L----------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
                            + E ++IE+ Y  Y  RQ  + K ++ E    IP DF+YS + 
Sbjct: 121 WNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQVK 180

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 181 GLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 226


>gi|47219742|emb|CAG12664.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 250

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 11/226 (4%)

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLG 454
           +  +  SRT+SYIGV+IDDL  +GV EPYRMFTSRAE+R +LRPDNAD RL+  G  ++G
Sbjct: 1   MPAVTLSRTESYIGVLIDDLVCRGVTEPYRMFTSRAEFRTALRPDNADLRLSLKGFEEVG 60

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTS----KNLSSTSISFKQDGKTR--TAYEFL 508
           C+   R +   +         + L+ L +++    K L    IS   D K    +    L
Sbjct: 61  CVSSERYQEALRVKNSLGEALAALQDLTMSTHKWRKTLPEVHIS---DAKAAVLSGLAVL 117

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            Y   S Q L S  PD  +  S   +RL+IE+ Y  +   Q  E + I+ EE   +P+D 
Sbjct: 118 QYNQVSYQMLASCFPDVLRPFSEFSQRLKIEAVYKPHCDHQKKEIERIQKEENMSLPQDI 177

Query: 569 DYSSLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           DY SLP +LS E++E L  ++P  L  A++++G+TPAA+  LL Y+
Sbjct: 178 DYFSLPVSLSQEVREILDRVRPSTLGAATRLQGITPAAIVHLLNYV 223


>gi|313759766|gb|ADR79195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
          Length = 158

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGDPG-VGFVHKSEPFVPPLPQVSCYITHTTEKTKEIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|313759758|gb|ADR79191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759760|gb|ADR79192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759764|gb|ADR79194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759768|gb|ADR79196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
          Length = 158

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGDPG-VGFVHRSEPFVPPLPQVSCYITHTTEKTKEIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|313759756|gb|ADR79190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila abortus]
 gi|313759762|gb|ADR79193.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759770|gb|ADR79197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila abortus LLG]
          Length = 158

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGDPG-VGFVHRSEPFVPPLPQVSCYITHTTEKTKDIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|218463270|ref|ZP_03503361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli Kim 5]
          Length = 174

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
           +LGC+   R++RF  Y  E +  R+ L SL +T        ++   DG+ RTAY+ LSYP
Sbjct: 1   RLGCVSRARERRFTVYQAEVDAGRAQLMSLKVTPNKARRAGLNINLDGQRRTAYDLLSYP 60

Query: 512 DFSIQNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           D+    L  + PDA       V E L+IE+ Y+ Y  RQ     + + +E+R IP DFDY
Sbjct: 61  DYDFAALRRVWPDALGAIRPTVAEALEIEAGYSVYLDRQAAAIADQQRDEERRIPDDFDY 120

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           S+L  LSNELK KLS  +PFN+ QA+ +EGMTPAA+ LLL+++++ +
Sbjct: 121 SALSGLSNELKTKLSAARPFNVAQAAIVEGMTPAAIALLLVHLRRRS 167


>gi|298370288|ref|ZP_06981604.1| glucose-inhibited division protein A [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281748|gb|EFI23237.1| glucose-inhibited division protein A [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 286

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 131/235 (55%), Gaps = 5/235 (2%)

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G N+ +     + +   R  +Y+GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 46  GANAVQYIRGQNPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR 105

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTR 502
           LT  G K+G + E + + F +  +        LK+   T + L+      +  ++  +  
Sbjct: 106 LTEDGHKIGLVSEEQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSREA 165

Query: 503 TAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             ++ L  P+     L ++     +   S+ VIE+++I+  Y  Y  RQ  E    +  E
Sbjct: 166 NLHDLLRRPNLDYAALMTLEGARPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSRRDIE 225

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
              +P D DYS +  LS E+++KL+  KP  + QAS+I G+TPAA+ LL++++K+
Sbjct: 226 TLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKR 280


>gi|296313292|ref|ZP_06863233.1| glucose-inhibited division protein A [Neisseria polysaccharea ATCC
           43768]
 gi|296840214|gb|EFH24152.1| glucose-inhibited division protein A [Neisseria polysaccharea ATCC
           43768]
          Length = 226

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R  +Y+GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE +
Sbjct: 1   MRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKVGLVGEAQ 60

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQN 517
            + F +  +        LK+   T + L+      +  ++  +    ++ L  P+     
Sbjct: 61  WRMFNEKREAVEREIQRLKTTWYTPQKLAENEQIRVFGQKLSREANLHDLLRRPNLDYAA 120

Query: 518 LFSI--CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
           L ++     +   S+ V+E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  
Sbjct: 121 LMTLEGAMPSENLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKG 180

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           LS E+++KL+  KP  + QAS+I G+TPAA+ LL++++K+
Sbjct: 181 LSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKR 220


>gi|218189780|gb|EEC72207.1| hypothetical protein OsI_05295 [Oryza sativa Indica Group]
          Length = 305

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 95/161 (59%), Gaps = 7/161 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---D 118
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL   +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 119 VIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
            +  EV  G N     + +    D       +VVLTTGTF+
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMD---FYAPSVVLTTGTFM 221


>gi|94502335|ref|ZP_01308807.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
 gi|94451112|gb|EAT14065.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
          Length = 156

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 92/156 (58%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGH+G EAA  A+ LG++T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVKQYDVIVVGGGHSGSEAALAASNLGSNTLLITTNLYNIGQMSCNPAMGGIAKGQMIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +  ++NL   
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKKKNLSFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           Q  V     +   +  +       I+  +V+LT GT
Sbjct: 121 QSTVVDLIIKNYKVIGVKTILGIYIKSKSVILTNGT 156


>gi|222874800|gb|EEF11931.1| predicted protein [Populus trichocarpa]
          Length = 95

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 72/95 (75%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 1   FDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 60

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
            G M    D  GIQFR+LN  KGPAVR  R QADR
Sbjct: 61  GGAMALATDIGGIQFRILNSSKGPAVRATRAQADR 95


>gi|219685811|ref|ZP_03540620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
 gi|219672644|gb|EED29674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
          Length = 128

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 74/99 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDAL
Sbjct: 3   FDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
            G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+
Sbjct: 63  GGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQ 101


>gi|159030092|emb|CAO90983.1| gidA [Microcystis aeruginosa PCC 7806]
          Length = 213

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E+DAL
Sbjct: 13  FDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-- 123
            G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +G   
Sbjct: 73  GGEIGKIADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANLVIREGMAT 132

Query: 124 --VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             + G N +   +  +     +      V+LTTGTFL G I IG   + AGR G+  S  
Sbjct: 133 DLILGANEQ---VLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFASVG 189

Query: 182 L 182
           L
Sbjct: 190 L 190


>gi|289808878|ref|ZP_06539507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 96

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 77/96 (80%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQG
Sbjct: 1   VRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQG 60

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           L+AG+N+AR S   +    +R+ +Y+GV++DDL ++
Sbjct: 61  LLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTR 96


>gi|238612927|ref|XP_002398335.1| hypothetical protein MPER_01087 [Moniliophthora perniciosa FA553]
 gi|215474664|gb|EEB99265.1| hypothetical protein MPER_01087 [Moniliophthora perniciosa FA553]
          Length = 132

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 72/87 (82%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV VIGGGHAGCEAAA +A+ GA T L+T K  TIG +SCNP+IGG+GKG LVREIDA
Sbjct: 32  AYDVCVIGGGHAGCEAAAASARTGARTLLLTQKLDTIGELSCNPSIGGVGKGTLVREIDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAV 91
           LDGLMGRV+D AGIQF VLN  KG AV
Sbjct: 92  LDGLMGRVSDKAGIQFYVLNRPKGAAV 118


>gi|269863877|ref|XP_002651378.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit
           GidA, predicted [Enterocytozoon bieneusi H348]
 gi|220064641|gb|EED42679.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit
           GidA, predicted [Enterocytozoon bieneusi H348]
          Length = 133

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/124 (59%), Positives = 88/124 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIV+GGGHAG EAAA AA+LG  T L+T    TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MQNSFDVIVVGGGHAGTEAAAAAARLGVRTLLLTQNLDTIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M    D AGIQFR LN  KGPAVR  R QADR LY+ A++R +     L + Q
Sbjct: 61  VDALGGIMALAIDQAGIQFRTLNASKGPAVRATRAQADRSLYKRAVRRLLEDIPALQLFQ 120

Query: 122 GEVA 125
           G V 
Sbjct: 121 GMVG 124


>gi|70922386|ref|XP_734367.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507043|emb|CAH86072.1| hypothetical protein PC301834.00.0 [Plasmodium chabaudi chabaudi]
          Length = 212

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---TDKITN-RQIECGITRT 245
           +F+  R+KTGTP RL   +I +D  EK+   E+  PF F    ++KI N + + C  T T
Sbjct: 43  NFEIKRMKTGTPPRLCKDSINFDILEKE-GTEKKHPFYFSFLNSNKINNNKTLPCYKTYT 101

Query: 246 NLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           N+ TH ++++ +     +   D    GPRYCPSI  K+ +F E+  H I+LEPEG +  +
Sbjct: 102 NMNTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEKKKHIIWLEPEGFDNIL 161

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           +YPNG+S+A P   Q + I +I GLE   I+ P Y +EY Y+NP
Sbjct: 162 IYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDVEYFYVNP 205


>gi|289810084|ref|ZP_06540713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 211

 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 4/202 (1%)

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 3   GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 62

Query: 479 KSLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 63  KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 122

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 123 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 182

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+++LL+++KK 
Sbjct: 183 ASRISGVTPAAISILLVWLKKQ 204


>gi|254672743|emb|CBA06740.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha275]
          Length = 118

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 70/90 (77%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRG 93
           AL G M    D +GIQFR LN  KG AVRG
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRG 108


>gi|305431782|ref|ZP_07400949.1| glucose inhibited division protein A [Campylobacter coli JV20]
 gi|304444866|gb|EFM37512.1| glucose inhibited division protein A [Campylobacter coli JV20]
          Length = 240

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 133/254 (52%), Gaps = 43/254 (16%)

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AG+N+    +  +     R ++YIGV+IDDL  KG  EPYRMFTSRAE+R+ LR +NA 
Sbjct: 1   MAGVNAVLALDNKEPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAI 60

Query: 444 NRLTPIGMKLGCIGERR-------------------QKRFAKYIQEYNFLRSL----LKS 480
            RL   G +LG + +                     +K F    +   FL S+    + S
Sbjct: 61  VRLGKYGKELGLLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITS 120

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +V   K ++ +S   ++  K  T +E  +  ++S++    I  +A+ +  + +++ Q+E 
Sbjct: 121 IVNLQKIVARSSFDIEKLKKLNTIFE--NMDEYSLR---EILNEAKYYHYIAMQKSQVEK 175

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
                  + +I+ K         IP DFD++S+  LSNE+ EKL   KP  L  AS+I G
Sbjct: 176 M------KNLIDMK---------IPSDFDFTSVSGLSNEVVEKLQKHKPLTLFAASEISG 220

Query: 601 MTPAALNLLLIYIK 614
           +TPAAL++L IYIK
Sbjct: 221 ITPAALDILQIYIK 234


>gi|58699038|ref|ZP_00373881.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534448|gb|EAL58604.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 234

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 16/210 (7%)

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +   R       ++
Sbjct: 23  VMIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLE 82

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
               L   L SL +T + L S  I    DG  +TA + LSYP+     L  I P+    +
Sbjct: 83  SIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSVT 142

Query: 530 SL----------------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                             + E ++IE+ Y  Y  RQ  + K ++ E    IP DF+YS +
Sbjct: 143 RWNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQV 202

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTP 603
             LS+E+ EKL  +    L   SK +   P
Sbjct: 203 KGLSSEVIEKLQTINQRRLALQSKYKASLP 232


>gi|218682746|ref|ZP_03530347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli CIAT 894]
          Length = 162

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 5/155 (3%)

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F  Y  E +  R+LL SL +T        ++   DG+ RTAY+ LSYP++    L  + P
Sbjct: 1   FTAYQAEIDAGRALLTSLAVTPNEARRAGLNINLDGQRRTAYDLLSYPNYDFAALREVWP 60

Query: 524 DARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           +   F+++   V E L+IE+ Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNEL
Sbjct: 61  ET--FAAIAPKVAEALEIEAGYSVYLERQASAIADQQRDEERQIPADFNYDALSGLSNEL 118

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           K KL+ ++PFN+ QA+ +EGMTPAA+ LLL+++++
Sbjct: 119 KTKLNAVRPFNIAQAAIVEGMTPAAIALLLVHLRR 153


>gi|229007797|ref|ZP_04165383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock1-4]
 gi|228753474|gb|EEM02926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock1-4]
          Length = 212

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 120/207 (57%), Gaps = 7/207 (3%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYR+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    + 
Sbjct: 2   TKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKL 61

Query: 477 LLKSLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
            L+S+++  +      + S   S  +DG    A + L  P+ + +++  + P   +    
Sbjct: 62  RLESIIIKPRPEVQELIRSVGGSELKDGIR--ASDLLRRPEMTYEHIRILAPSEVEIHDE 119

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E+++I+  Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P +
Sbjct: 120 IAEQVEIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLS 179

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 180 MGQASRISGVNPADISILLVYIEQGKI 206


>gi|148694451|gb|EDL26398.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_a [Mus musculus]
          Length = 150

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 82/103 (79%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 36  FDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDAL 95

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           DGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ
Sbjct: 96  DGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQ 138


>gi|149572464|ref|XP_001516759.1| PREDICTED: similar to MTO1 [Ornithorhynchus anatinus]
          Length = 200

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/119 (57%), Positives = 88/119 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGGHAG EAAA AA+ G  T L+ H    +G MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 41  YDVLVVGGGHAGTEAAAAAARTGCRTLLLNHHVHPLGQMSCNPSFGGIGKGHLMREVDAL 100

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           DGL GR+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQREIL+   L V +  V
Sbjct: 101 DGLCGRICDLSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQREILNTPLLTVQEASV 159


>gi|169836600|ref|ZP_02869788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 148

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 84/144 (58%), Gaps = 12/144 (8%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP++GG  K HL +E+DAL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y
Sbjct: 1   MSCNPSVGGPAKSHLAKEVDALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIY 60

Query: 104 RLAMQREILSQENLDVIQGEVA------------GFNTEKNIISSIVMQDNSMIRCSTVV 151
              M++ I  QENLD++Q  V             G    + ++  I  +         VV
Sbjct: 61  AREMKKTIEHQENLDIVQDIVTELIVDEVEIDEKGSKRIEKVVRGIKTKTGMEFFAKAVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMG 175
           L TGTFLRG+++IG  ++  GR G
Sbjct: 121 LATGTFLRGLLYIGDKRVKGGRTG 144


>gi|5731953|emb|CAB52589.1| glucose inhibited division protein A, putative [Sweet potato little
           leaf phytoplasma]
          Length = 183

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IGV+IDDL +KG  EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +        
Sbjct: 1   IGVLIDDLINKGTYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNK 60

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPD 524
             + N+L+  L +  L + +L   +I+   D +  + Y+ L   D     + N F     
Sbjct: 61  QMQINYLKEKLHNFYLDADSLYKFNIN--SDSRRISLYQLLKRSDLKEDILNNFF----- 113

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
           A ++S  V+E++ I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL
Sbjct: 114 ASQYSVDVLEQVGIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKL 173

Query: 585 SILKPFNLLQ 594
           + +KPFN+ Q
Sbjct: 174 TKIKPFNIAQ 183


>gi|40218204|gb|AAR83008.1| GidA [Escherichia coli]
          Length = 86

 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 64/79 (81%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66 DGLMGRVADAAGIQFRVLN 84
           GLM +  D AGIQFR+LN
Sbjct: 67 GGLMAKAIDQAGIQFRILN 85


>gi|94502427|ref|ZP_01308869.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
 gi|94451015|gb|EAT13998.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
          Length = 212

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 15/220 (6%)

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R ++YIGV+IDDL  KG  EPYRMFTSRAEYRI LR DNAD RLT +G+ LG +   R
Sbjct: 2   LKRNEAYIGVLIDDLIYKGTEEPYRMFTSRAEYRILLRQDNADERLTHMGINLGLVSYDR 61

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-- 518
                  I++        K   L  K   + ++  K++ K     + LS P+ SI ++  
Sbjct: 62  -------IKKLKNKNKNKKQCFLFFKINKANNLILKENIKI---CDLLSRPEISIYDIIK 111

Query: 519 FSICPDARKFSSL---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
            S+  +  K +++   ++E++ +   Y  Y  ++    K++   E   IP DFDY+ + +
Sbjct: 112 LSLIKNFIKKNNIDKKILEQISLYIKYKGYLLKEEENVKKMYRLETIRIPNDFDYNQVKS 171

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +S E +EKL   KP ++ +AS+I G++P+ + +L++++ K
Sbjct: 172 ISIEAREKLLNYKPNSIGEASRISGVSPSDIRILILFLIK 211


>gi|255023682|ref|ZP_05295668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-208]
          Length = 117

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/107 (49%), Positives = 69/107 (64%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTI 114


>gi|76782136|gb|ABA54842.1| GidA [Nostoc commune DRH1]
          Length = 154

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 11/136 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GH+GCEAA  +A+LG  T L+T     I    CNPA+GG  K  L  E+DA
Sbjct: 12  AFDVIVVGAGHSGCEAALASARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ--- 121
           L G +G+VAD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +   
Sbjct: 72  LGGEIGKVADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQENLTIRESIA 131

Query: 122 --------GEVAGFNT 129
                   GEV+G  T
Sbjct: 132 TDLVLGAYGEVSGVET 147


>gi|213608024|ref|ZP_03368850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 201

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 4/193 (2%)

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T  
Sbjct: 1   FTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPS 60

Query: 487 NLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIESSY 542
             S+  ++        +  +  + L  P+ +   L S+   A         E+++I+  Y
Sbjct: 61  AESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKY 120

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G+T
Sbjct: 121 EGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVT 180

Query: 603 PAALNLLLIYIKK 615
           PAA+++LL+++KK
Sbjct: 181 PAAISILLVWLKK 193


>gi|123242162|emb|CAM20958.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
          Length = 98

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEV 124
           +  MQ+EIL+   L V +G V
Sbjct: 61  KQNMQKEILNTPLLTVQEGAV 81


>gi|407664|gb|AAD12347.1| uncertain [Mycoplasma genitalium]
          Length = 94

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST+   EIQ + I+ +PG +   I + GYAIEYD     +L PTLETK I  
Sbjct: 2   DTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIEN 61

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 62  LYFAGQINGTSGYEEAAGQGLMAGINAALK 91


>gi|119569153|gb|EAW48768.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_i [Homo sapiens]
          Length = 228

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 115/199 (57%), Gaps = 11/199 (5%)

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           MFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   
Sbjct: 1   MFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFL 60

Query: 485 S----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSL--VIERLQ 537
           S    K +   SIS  +    R A + L Y +  + +L    P+  +K++    + ERL+
Sbjct: 61  SSKWKKLIPEASISTSRSLPVR-ALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLK 119

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQA 595
           IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  A
Sbjct: 120 IEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAA 179

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+TPAA+  LL ++K
Sbjct: 180 SRIPGVTPAAIINLLRFVK 198


>gi|20799574|gb|AAM28552.1|AF494528_1 glucose inhibited division protein A 3 [Tomato big bud phytoplasma]
          Length = 183

 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 10/189 (5%)

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y GV+IDDL +KG   PYR+ TSRAE+R+ LR DNAD RL P G K G I  +       
Sbjct: 1   YXGVLIDDLINKGTYXPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKN 60

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICP 523
              + N+L+  L +  L + +L   +I+   D +  + Y+ L   D     + N F    
Sbjct: 61  KQMQINYLKEKLHNFYLDADSLYKFNIN--SDSRRISLYQLLKRSDLKEDILNNFF---- 114

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            A ++S  V+E++ I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEK
Sbjct: 115 -ASQYSVDVLEQVGIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEK 173

Query: 584 LSILKPFNL 592
              +KPFN+
Sbjct: 174 XXKIKPFNI 182


>gi|20799554|gb|AAM28544.1|AF494515_1 glucose inhibited division protein A [Tomato big bud phytoplasma]
          Length = 174

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 10/181 (5%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +          + N+L+ 
Sbjct: 1   NKGTYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNKQMQINYLKE 60

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS---IQNLFSICPDARKFSSLVI 533
            L +  L + +L   +I+   D +  + Y+ L   D     + N F     A ++S  V+
Sbjct: 61  KLHNFYLDADSLYKFNIN--SDSRRISLYQLLKRSDLKEDILNNFF-----ASQYSVDVL 113

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL  +KPFN+ 
Sbjct: 114 EQVGIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKLXKIKPFNIA 173

Query: 594 Q 594
           Q
Sbjct: 174 Q 174


>gi|301090002|ref|XP_002895249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG,
           putative [Phytophthora infestans T30-4]
 gi|262101005|gb|EEY59057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG,
           putative [Phytophthora infestans T30-4]
          Length = 151

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 10/115 (8%)

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           MG+VADAAGIQFR+LN  KGPAVRGPR Q DR+LY+  +Q+ +    NL +++  V    
Sbjct: 1   MGQVADAAGIQFRMLNSAKGPAVRGPRAQMDRDLYQQGIQKALQELPNLWLVEDGVDDLM 60

Query: 129 TEK---------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGR 173
            EK           +  +V      I+ S VV+TTGTFLRG+I+ G  ++IPAGR
Sbjct: 61  LEKINQSNDDVEERVKGVVTSSGREIQASQVVITTGTFLRGMIYQGPDIRIPAGR 115


>gi|213422763|ref|ZP_03355809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E01-6750]
          Length = 75

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 54/69 (78%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 6  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 65

Query: 66 DGLMGRVAD 74
           GLM +  D
Sbjct: 66 GGLMAKAID 74


>gi|206900653|ref|YP_002251234.1| gid protein [Dictyoglomus thermophilum H-6-12]
 gi|254789171|sp|B5YFC6|TRMFO_DICT6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|206739756|gb|ACI18814.1| gid protein [Dictyoglomus thermophilum H-6-12]
          Length = 439

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 73/434 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IGGG AG EAA   AK      +           HKT  +  + C+ +         
Sbjct: 4   VKIIGGGLAGSEAAWQLAKRKIPVEIYEMRPVVTTPVHKTEYLAELVCSNSFKSTELTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVA+   +          PA  G     DREL+   +Q  +L  
Sbjct: 64  SGLLKEEMKKLDSLLLRVAEETRV----------PA--GVALAVDRELFAKRVQEILLES 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ EV     E  +I             +T  LT+  F   +I I  L   +   
Sbjct: 112 PYVTVIREEVKKIPEEGIVI------------VATGPLTSSDFAEHLIEI--LDTDSLYF 157

Query: 175 GDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            D+ S  ++   + ++  F   R   G  A L+                       MT +
Sbjct: 158 YDAVSPIIYADSINYEKVFSASRYGKGEEAYLNCP---------------------MTKE 196

Query: 233 ITNRQIECGITRTNLETHRIIMEN-------IKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
              R +E  +    +E+H    E        I+  A    D   YGP     + D   + 
Sbjct: 197 EYERFVEELVNAETVESHYPGEEKFFEGCLPIEVLARRGIDTLRYGPMKPVGLIDP--KT 254

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G+     + L PE +   +    G  T L  + Q +  R IPGLE     R G      Y
Sbjct: 255 GKEPYAVVQLRPENIQKTLYSMVGFQTRLKFQEQRRIFRMIPGLENAEFARYGVMHRNTY 314

Query: 346 I-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
              PK L PTL+  K   +F AGQ+ G  GY E+AA G+VAGIN+AR       I    T
Sbjct: 315 FYAPKFLKPTLQFIKNERVFFAGQLIGVEGYMESAAMGIVAGINAARLYKGKPLIILPPT 374

Query: 405 DSYIGVMIDDLTSK 418
            + IG +I  +T+K
Sbjct: 375 -TMIGALISYVTTK 387


>gi|67984129|gb|AAY84707.1| GidA [Vibrio mimicus]
          Length = 67

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2  LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61 EIDAL 65
          E+DA+
Sbjct: 62 EVDAM 66


>gi|229087970|ref|ZP_04220077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
 gi|228695339|gb|EEL48217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
          Length = 191

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSST 491
           +R DNAD RLT IG ++G I + R +RF    +     ++ L+ L++  +      + S 
Sbjct: 1   MRHDNADLRLTEIGHEIGLIPDERYERFTMKKETVEQEKARLEGLIIKPRPEVQELIRSI 60

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
             S  +DG    A + L   + + +++  + P   + +  + E+++I+  Y  Y  + + 
Sbjct: 61  GGSELKDGIR--ASDLLRRTEVTYEHIRLLVPSEVEINDEIAEQVEIQVKYEGYIEKSLQ 118

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           +   +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I G+ PA +++LL+
Sbjct: 119 QVDRMKKMENKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRISGVNPADISILLV 178

Query: 612 YIKKNTV 618
           YI++  +
Sbjct: 179 YIEQGKI 185


>gi|332855186|ref|ZP_08435737.1| hypothetical protein HMPREF0021_03326 [Acinetobacter baumannii
          6013150]
 gi|332727563|gb|EGJ58985.1| hypothetical protein HMPREF0021_03326 [Acinetobacter baumannii
          6013150]
          Length = 74

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64


>gi|150020140|ref|YP_001305494.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosipho melanesiensis
           BI429]
 gi|205830345|sp|A6LJK8|TRMFO_THEM4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|149792661|gb|ABR30109.1| gid protein [Thermosipho melanesiensis BI429]
          Length = 429

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 94/450 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------------G 54
           V +IG G AG E A      G    +   K     ++  NP  G L              
Sbjct: 3   VNIIGAGLAGVEVAWKLLNTGVKVRIFEQKPKKFSTVHKNPNFGELVCSNSLKSESLNNA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L  E++ LD L+ + A    +          PA  G     DR+ +   +   ILS 
Sbjct: 63  EGILKAEMNILDSLVLKCAYRCRV----------PA--GKALAVDRDKFSQCITEHILSF 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +N++VI+ E          I SI ++++ +   +T   T G F   +             
Sbjct: 111 DNVEVIREE----------IKSIDLKEDEIWVVATGPTTDGEFANWL------------- 147

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
                ++L   F+ F FD           + G +I ++K    FAD           K T
Sbjct: 148 -----SNLTGGFLNF-FD------AVAPIISGDSIDFNKC--FFADR--------YGKGT 185

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           +  I C +T+   E     + N +   +   D K    R C  IE+ I + GE++     
Sbjct: 186 SDYINCPMTKEEYERFYKELINAEKIEMEDFDRKLLFER-CQPIEE-IAKSGEKSLLFGP 243

Query: 295 LEPEGL--------------------NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           L P GL                    N ++    G  T L    Q + IR IPGLE   I
Sbjct: 244 LRPVGLIDPRTGKMPYAIIQLRKEDENGNMYNLVGFQTRLKWPQQKRIIRLIPGLENAEI 303

Query: 335 IRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           +R G      YI+ PK L   L  KK   LF AGQI G  GY E+AA G+  GIN  R  
Sbjct: 304 LRYGVMHRNTYIDSPKVLDEFLRHKKFQNLFFAGQITGVEGYVESAATGIFVGINILRFL 363

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            K + +    T + +G +++ +T+   L+P
Sbjct: 364 EKKELVALP-TKTMLGALLNYITTSKQLKP 392


>gi|212639575|ref|YP_002316095.1| glucose-inhibited division protein [Anoxybacillus flavithermus WK1]
 gi|259547945|sp|B7GGC8|TRMFO_ANOFW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|212561055|gb|ACJ34110.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           (glucose-inhibited division protein) [Anoxybacillus
           flavithermus WK1]
          Length = 432

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 170/425 (40%), Gaps = 56/425 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIG G AG EAA   AK G    L           H T     + C+ ++       
Sbjct: 2   EVTVIGAGLAGSEAAWQLAKRGIRVKLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD ++ + AD+  +          PA  G     DR  +   + + + +
Sbjct: 62  AVGVLKEEMRRLDSVIMKAADSCSV----------PA--GGALAVDRHEFAAKVTQMVTN 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V++ EV    T   II++  +    +       LT   +L            A  
Sbjct: 110 HPNVTVVREEVTSIPTGPTIIATGPLTSQPLSE-QLQALTGEEYLY-------FYDAAAP 161

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +  S  +   ++K  +D G          +   I    TE++F  ER        + +
Sbjct: 162 IVEKESIDMEKVYIKSRYDKG----------EAAYINCPMTEEEF--ERFYDALISAETV 209

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             ++ E  I         ++    K + ++       GP     +ED   R G+R    +
Sbjct: 210 PLKEFEKEIYFEGCMPIEVMARRGKKTLLF-------GPMKPVGLEDP--RTGKRPFAVV 260

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q + IR IPGLE+  I+R G      +IN PK L 
Sbjct: 261 QLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRFIPGLEQAEIVRYGVMHRNTFINSPKLLK 320

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT + K+   LF AGQ+ G  GY E+AA GLVAGIN+A      + + F + ++ IG M 
Sbjct: 321 PTYQYKEREDLFFAGQMTGVEGYVESAASGLVAGINAAHYVLGKELVVFPQ-ETAIGSMA 379

Query: 413 DDLTS 417
             +TS
Sbjct: 380 HYITS 384


>gi|332295805|ref|YP_004437728.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Thermodesulfobium narugense DSM 14796]
 gi|332178908|gb|AEE14597.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Thermodesulfobium narugense DSM 14796]
          Length = 446

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 170/446 (38%), Gaps = 62/446 (13%)

Query: 2   INRSYDVI-VIGGGHAGCEAAAVAAKLG---------ASTALITHKTSTIGSMSCNPAIG 51
            N+  D I +IG G AG EAA    + G                HKT     + C+ ++G
Sbjct: 3   FNKERDRINIIGAGLAGSEAALFLLEKGYLINVYEMRPKVKTPVHKTDLFAELVCSNSLG 62

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  EI  L   + R+A+ + ++             G     DRE +   +
Sbjct: 63  NKNIFSASGLLKEEIKILGSNLIRLAEVSSVE------------AGQALAVDREEFSRHV 110

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             +ILS  N++VI+ EV              + +N+    +T  LT+    +        
Sbjct: 111 TNKILSYPNVNVIREEVRE------------IPENTFTIVATGPLTSENLFKYFQKFLGS 158

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           K        SP     +  + F F   R   G  A L+        +EK++         
Sbjct: 159 KDLYFYDATSPIIKYDSIDLNFAFWANRYNKGDSAYLNCPM-----SEKEY--------- 204

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMEN---IKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
              D      I+    R++        E    I+  A    D   YGP     ++D   +
Sbjct: 205 ---DFFYEELIKADSIRSHFPDEERYFEGCLPIEELARRGRDTLLYGPLKPRGLKDP--K 259

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             +     + L PE  +  +    G  T LP + Q +  R IP L+    +R G   +  
Sbjct: 260 TNKEPYCVVQLRPENKDKTLFNMVGFQTRLPFKEQDKIFRLIPALKNAEFVRYGVMHKNI 319

Query: 345 YINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           Y NP  L   +LE+KK + LF AGQI GT GY EA A GL+A IN   K      +   +
Sbjct: 320 YFNPSSLIKESLESKKFNNLFFAGQITGTEGYVEAIATGLLAAINLHLKIQGKPHLVLPK 379

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTS 429
           T + +G +I+ + S  V +P  M  S
Sbjct: 380 T-TVLGSLINHIISVSVEKPAPMNVS 404


>gi|319789192|ref|YP_004150825.1| gid protein [Thermovibrio ammonificans HB-1]
 gi|317113694|gb|ADU96184.1| gid protein [Thermovibrio ammonificans HB-1]
          Length = 438

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 179/428 (41%), Gaps = 67/428 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIGGG AG E A  AA  G+   L           H+T  +  + C+  +GG      +G
Sbjct: 9   VIGGGLAGVETAWRAANEGSKVRLFEMRPEKTTPAHRTDKLAELVCSNTLGGKEITTPRG 68

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E++ L+ L   V +AA         KK     G     DRE +   +  +I +  N
Sbjct: 69  LLKAEMELLNSL---VVEAA---------KKTAVPAGGALAVDREKFADYITEKIETHPN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI-HIGKLKIPAGRMG 175
           ++VI+ EV              + +  +   +T  LT+ TF R +  ++G+ ++      
Sbjct: 117 IEVIRQEVTQ------------LPEEGITVVATGPLTSDTFSRFLREYLGEEEL---HFY 161

Query: 176 DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           D+ S  ++   + +   F   R   G    L+        T++++  E+        +K+
Sbjct: 162 DAISPIVYADTIDYTKCFWGSRYGKGGDDYLNCPM-----TKEEY--EKFYNALMEAEKV 214

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCPSIEDKIVRFGERNG 290
             ++ E             + E  K + ++ G +K  G   PR        +V+  + N 
Sbjct: 215 PLKEFEKACYFEGCMPIEEMAERGKETLLF-GPLKPVGLIDPRTGKQ-PHAVVQLRKENR 272

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
               L   G  T + YP           Q +  R IPGLE     R G      +IN PK
Sbjct: 273 EGTLLNLVGFQTKLKYPE----------QKRVFRLIPGLENAEFARYGSIHRNTFINSPK 322

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTL+ KK   +  AGQI G  GY E+AA G+VAG+N++R +N  + +   R ++ IG
Sbjct: 323 LLLPTLQLKKNPKVLFAGQITGVEGYPESAATGIVAGLNASRIANNKEPVVPPR-ETMIG 381

Query: 410 VMIDDLTS 417
            ++  +T 
Sbjct: 382 GLLRYITE 389


>gi|217967907|ref|YP_002353413.1| gid protein [Dictyoglomus turgidum DSM 6724]
 gi|254789172|sp|B8E2F5|TRMFO_DICTD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|217337006|gb|ACK42799.1| gid protein [Dictyoglomus turgidum DSM 6724]
          Length = 439

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 166/434 (38%), Gaps = 73/434 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IGGG AG EAA   AK      +           HKT  +  + C+ +         
Sbjct: 4   VKIIGGGLAGSEAAWQLAKRKIPVEIYEMRPIVTTPVHKTEYLAELVCSNSFKSTEITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVA+   +          PA  G     DREL+   +Q  +L  
Sbjct: 64  SGLLKEEMRKLDSLLLRVAEETRV----------PA--GVALAVDRELFSKRVQEILLES 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ EV     E  +I             +T  LT+  F   ++ +  L   +   
Sbjct: 112 PYVTVIREEVKKLPKEGIVI------------VATGPLTSSDFAEHLMEV--LDTDSLYF 157

Query: 175 GDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            D+ S  ++   + ++  F   R   G    L+                       MT +
Sbjct: 158 YDAVSPIIYADSINYEKVFSASRYGKGEETYLNCP---------------------MTKE 196

Query: 233 ITNRQIECGITRTNLETHRIIMEN-------IKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
              R +E  I    +E+H    E        I+  A    D   YGP     + D   + 
Sbjct: 197 EYERFVEELINAETVESHYPGEEKFFEGCLPIEVLAKRGIDTLRYGPMKPIGLIDP--KT 254

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G+     + L PE +   +    G  T L  + Q +  R IPGLE     R G      Y
Sbjct: 255 GKEPYAVVQLRPENIQKTLYSMVGFQTRLKFQEQRRIFRMIPGLENAEFARYGVMHRNTY 314

Query: 346 I-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
              PK L  TL+  K   +F AGQ+ G  GY E+AA G+VAGIN+AR       I    T
Sbjct: 315 FYAPKFLKATLQFIKDERVFFAGQLIGVEGYMESAAMGIVAGINAARLYKGKPLIILPPT 374

Query: 405 DSYIGVMIDDLTSK 418
            + IG +I  +T+K
Sbjct: 375 -TMIGALISYVTTK 387


>gi|313895653|ref|ZP_07829209.1| tRNA:m(5)U-54 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975779|gb|EFR41238.1| tRNA:m(5)U-54 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 443

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 173/422 (40%), Gaps = 68/422 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GA   L           HKT     + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAARRGAEVTLFEMRPGRTSPAHKTDDFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ R ADA  +          PA  G     DR  +   +  +I + 
Sbjct: 64  VGVLKEEMRRMDSLIIRAADATAV----------PA--GGALAVDRRRFSRYITEQITAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH--IGKLKI--- 169
            N+ + + E          I ++   +++++  ++  LT+G  L   IH  +G   +   
Sbjct: 112 PNISIRREE----------IKAVPRDEDAVVIIASGPLTSGA-LADEIHALLGDDALYFY 160

Query: 170 -PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D+ S  +  ++        R   G P+ L+    + D+  + F       +  
Sbjct: 161 DAAAPLVDAASIDMTQAYR-----ASRYGKGEPSYLN--CPMNDREYEAF-------WQA 206

Query: 229 MT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           +T  +K      E  I         ++    K + ++ G +K  G  +  +        G
Sbjct: 207 LTAAEKADVHDFEKEIFFEGCMPVEVMASRGKDTLLF-GPLKPMGLEHPET--------G 257

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ER+   + L  +     +    G  T L    Q +  R IPGL     +R G      +I
Sbjct: 258 ERSYAVVQLRQDNAEGTIYNIVGFQTRLKWAEQRRVFRMIPGLSHAEFLRYGVMHRNTFI 317

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P+ L PT + +  + LF AGQ+ G  GY E+AA GL AGIN+AR +     + F +T 
Sbjct: 318 NAPRHLRPTFQLRSENTLFFAGQMTGVEGYVESAASGLTAGINAARIAADRTPVVFPQTT 377

Query: 406 SY 407
            +
Sbjct: 378 CH 379


>gi|114611764|ref|XP_001175241.1| PREDICTED: similar to Mitochondrial translation optimization 1
           homolog, partial [Pan troglodytes]
          Length = 96

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 55/93 (59%)

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D S +   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGT
Sbjct: 1   DGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGT 60

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           P R+  ++I +    K   D   +PFSF  + +
Sbjct: 61  PPRIAKESINFSILNKHIPDNPSVPFSFTNETV 93


>gi|218288286|ref|ZP_03492585.1| gid protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241645|gb|EED08818.1| gid protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 437

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 159/420 (37%), Gaps = 68/420 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA  AA  GA   L           H T+    + C  ++        
Sbjct: 4   VTVIGAGLAGSEAAWQAANRGAKVTLYEMRPVQMTPAHHTARFAELVCTNSLRSNSITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R ADA  +          PA  G     DR+ +   +   +   
Sbjct: 64  VGLLKEEMRRLDSVIMRAADAHAV----------PA--GNALAVDRDGFSQRVTELVSQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF---LRGVIHIGKLKI-- 169
            N+ V++ EV     E   +             +T  LT+      +R ++  G L    
Sbjct: 112 PNITVVREEVTEIPKEGVTV------------VATGPLTSPALSEDIRRLVGHGDLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  +    S  +   F +  +D G          D   I    TE++F        +F 
Sbjct: 160 AAAPIVTKESIDMSKVFFQSRYDQG----------DAAYINCPMTEEEFE-------AFY 202

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGE 287
              I     EC   + + E  R     +   A+     ++  +GP     + D   R G 
Sbjct: 203 DALI---HAECAELK-DFEEERYFEGCMPIEALAKRGKQTLLFGPMKPVGLRDP--RTGR 256

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q +  R IPGLE+   +R G      YIN
Sbjct: 257 RPFAVVQLRQDNAAATLYNMVGFQTHLKWGEQKRVFRMIPGLEQAEFVRYGVMHRNTYIN 316

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L PT + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +   D + F  T S
Sbjct: 317 SPVALLPTYQAKARPTLFFAGQMTGVEGYVESAASGLIAGINAARVAAGQDALVFPPTTS 376


>gi|223985628|ref|ZP_03635678.1| hypothetical protein HOLDEFILI_02984 [Holdemania filiformis DSM
           12042]
 gi|223962395|gb|EEF66857.1| hypothetical protein HOLDEFILI_02984 [Holdemania filiformis DSM
           12042]
          Length = 436

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 189/506 (37%), Gaps = 101/506 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AGCEAA   A+ G +  L+          HKT     + C+ ++        
Sbjct: 5   VTVVGAGLAGCEAAWQLAQRGIAVTLVEMRPEKMTPAHKTGKFAELVCSNSLRSDALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++  VAD    Q++V      PA  G     DRE +  A+  ++   
Sbjct: 65  VGVLKAEMRRLDSVIMSVAD----QYKV------PA--GSALAVDREAFSEAVTEKVSGH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V+  EV        II+S  +  +++ R         +F             A  +
Sbjct: 113 PLIEVVHREVTEIPEGPCIIASGPLTSDALGRQIQAFFDQESFY--------FYDAAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTG------------RLKTGTPARLDGKTIIWDKTEKQFADER 222
            D  S     ++ K  +D G            + +    A +  ++    + EK+   E 
Sbjct: 165 IDKDSIDFTQAYYKSRYDKGEADYINCPMDKAQFEAFYDALIHAESAPVHEHEKEIYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG-PRYCPSIEDK 281
            +PF  M  +                             +  G +K  G  R   S    
Sbjct: 225 CMPFEEMARR-------------------------GEKTLLFGPMKPVGLERPDGSRPYA 259

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N         G  T + +P           Q + +R IPGLE   I+R G   
Sbjct: 260 VVQLRQDNAAASMYNVVGFQTHLKWPE----------QRRILRMIPGLENCEILRYGVMH 309

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L PT +T K   LF AGQ+ G  GY E+AA GL AGI   R    L    
Sbjct: 310 RNSYINSPLCLRPTYQTVKREDLFFAGQMTGVEGYIESAASGLNAGIQCVRLVLGLTPEP 369

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F +T   IG M   +T     +P              +P NA+  + P+  K+    ++ 
Sbjct: 370 FPQT-CMIGAMAHYITHA---DPKH-----------FQPMNANFGILPLVQKV----KKS 410

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSK 486
           +++ A  IQ  N L    +SL   +K
Sbjct: 411 ERKEAYGIQALNELAQFQQSLSWNTK 436


>gi|295399801|ref|ZP_06809782.1| gid protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978204|gb|EFG53801.1| gid protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 440

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      +IN PK L PT + K+   LF AG
Sbjct: 280 GFQTHLKWGAQKEVIRLIPGLENAEIVRYGVMHRNTFINSPKLLRPTYQYKERDDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+AR     D + F R ++ IG M   +TS
Sbjct: 340 QMTGVEGYVESAASGLVAGINAARLVLGQDLLVFPR-ETAIGSMAHYITS 388


>gi|312111687|ref|YP_003990003.1| gid protein [Geobacillus sp. Y4.1MC1]
 gi|311216788|gb|ADP75392.1| gid protein [Geobacillus sp. Y4.1MC1]
          Length = 440

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      +IN PK L PT + K+   LF AG
Sbjct: 280 GFQTHLKWGAQKEVIRLIPGLENAEIVRYGVMHRNTFINSPKLLRPTYQYKERDDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+AR     D + F R ++ IG M   +TS
Sbjct: 340 QMTGVEGYVESAASGLVAGINAARLVLGQDLLVFPR-ETAIGSMAHYITS 388


>gi|33861672|ref|NP_893233.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81572991|sp|Q7TU75|TRMFO_PROMP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33640040|emb|CAE19575.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 470

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 208/526 (39%), Gaps = 91/526 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AGCEAA   A  G +  L+          H TS    + C+ + G
Sbjct: 1   MIDKQ--VIVIGAGLAGCEAAWQIANSGIAVKLVEMRPLNSTPAHHTSEFAELVCSNSFG 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            L      G L  E+   + L+ + AD    +F V      PA  G     DR  +  ++
Sbjct: 59  ALSADRAAGLLQEELRTFNSLIIQTAD----KFSV------PA--GGALAVDRSKFSKSL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIG 165
            + + +   +++ + E      +KNI                 VL TG      +   I 
Sbjct: 107 TQTLSAHPFVEISRFEQLDLPNKKNI----------------TVLATGPLTSDELATKIK 150

Query: 166 KLK-IPAGRMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
           K   I +    D+ S  ++   +  +  F   R   G PA L+                +
Sbjct: 151 KFTGIDSCHFFDAASPIIYGDSINHEIVFKASRYDKGDPAYLNCPI------------NK 198

Query: 223 LIPFSFMTDKITNRQI---ECGITRTNLETHRIIMENIKHSAIYS---GDIKSYG---PR 273
           L  F+F    I   Q    +      N     + +E I    I +   G +KS G   P 
Sbjct: 199 LDYFNFRNALINGEQASLKDFDKESANFFEACLPIEEIARRGIETMRYGPLKSIGLWNPN 258

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           +   + D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK  
Sbjct: 259 WG-DLFDRENRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAE 317

Query: 334 IIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G      ++ +PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  
Sbjct: 318 FVRFGVMHRNTFLESPKLLLPTLQFLKRETLFAAGQITGTEGYAAAAAGGLLAGINASLL 377

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   + + F   +S IG +++ +++                R  +  +   N+  P+   
Sbjct: 378 AKNKNLVTFP-NESMIGSLMNFISN----------------RNEIMSNQKKNKFQPMPAS 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            G + E   K   K ++   +    LK L +  K L +   SFK D
Sbjct: 421 FGLVPELTNKIKDKKLRYKAYQERSLKELQVFKKVLDA---SFKND 463


>gi|51892620|ref|YP_075311.1| tRNA (uracil-5-)-methyltransferase Gid [Symbiobacterium
           thermophilum IAM 14863]
 gi|81170607|sp|Q67PC6|TRMFO_SYMTH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|51856309|dbj|BAD40467.1| glucose-inhibited division protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 447

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T+L    Q +  R IPGLE+    R G      ++ +P+ L+PT E+++ +GLF AG
Sbjct: 283 GFQTSLKWSEQKRVFRMIPGLEEAEFERYGVIHRNTFMKSPRLLYPTGESRQRAGLFFAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR++  L+ + F R ++ IG ++  +T
Sbjct: 343 QMTGVEGYVESAAGGLVAGINAARRALGLEPVTFPR-ETAIGSLLHYIT 390


>gi|213422911|ref|ZP_03355937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 47

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 41/46 (89%)

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           YCPSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q
Sbjct: 1   YCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQ 46


>gi|239826605|ref|YP_002949229.1| gid protein [Geobacillus sp. WCH70]
 gi|239806898|gb|ACS23963.1| gid protein [Geobacillus sp. WCH70]
          Length = 440

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      +IN PK L PT + K+   LF AG
Sbjct: 280 GFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFINSPKLLRPTYQYKERDDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+AR     + + F R ++ IG M   +TS
Sbjct: 340 QMTGVEGYVESAASGLVAGINAARLVLGQELVVFPR-ETAIGSMAHYITS 388


>gi|123966440|ref|YP_001011521.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9515]
 gi|205830320|sp|A2BXA3|TRMFO_PROM5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123200806|gb|ABM72414.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9515]
          Length = 467

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 186/443 (41%), Gaps = 66/443 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+N+  +VIVIG G AGCEAA   A  G    L+          H TS  G + C+ + G
Sbjct: 1   MLNK--EVIVIGAGLAGCEAAWQIANSGVEVKLVEMRPIHSTPAHHTSEFGELVCSNSFG 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            L      G L  E+   + L+   AD         +V  G A+   R++  + L +   
Sbjct: 59  ALSTDRAAGLLQEELRTFNSLIINTADE-------FSVPAGGALAVDRSKFSKSLTQTLS 111

Query: 108 QR---EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                EI   E LD+          +KN I+ I          +T  LT+      + + 
Sbjct: 112 NHPLVEIKRFEQLDL---------PDKNRITVI----------ATGPLTSNELANKLKNF 152

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
             L   +    D+ S  ++   + +D  F   R   G PA L+      +K +       
Sbjct: 153 TGLD--SCHFFDAASPIIYGETINYDIAFRASRYDKGDPAYLNCPM---NKIDYLNFRNA 207

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS---GDIKSYG---PRYCP 276
           LI     T K   ++        N     + +E +    + +   G +KS G   P++  
Sbjct: 208 LIEAEQATLKDFEKE------SANFFEACLPIEEMARRGVDTMRYGPLKSIGLWNPKWG- 260

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
            + D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R
Sbjct: 261 DLFDRENRLKKRPHAIVQLRKEDLKGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVR 320

Query: 337 PGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
            G      ++ +PK L PTL+  K   LF AGQI GT GY  AA+ GL+AG+N++  +N 
Sbjct: 321 FGVMHRNTFLESPKLLLPTLQFLKRENLFAAGQITGTEGYAAAASGGLLAGLNASLLANN 380

Query: 396 LDCICFSRTDSYIGVMIDDLTSK 418
              + F   +S IG +++ +++K
Sbjct: 381 KSPVTFP-DESMIGALMNFISNK 402


>gi|169839563|ref|ZP_02872751.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 67

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +R GYA+EY+++   +L  TLETK + GL+ AG INGT+GYEEAA QG +AG+N+ARK
Sbjct: 1   VRYGYAVEYNFVPAHQLKLTLETKVLDGLYTAGTINGTSGYEEAACQGFIAGVNAARK 58


>gi|224476374|ref|YP_002633980.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254789176|sp|B9DPG3|TRMFO_STACT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222420981|emb|CAL27795.1| glucose-inhibited division protein gid [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 436

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 194/508 (38%), Gaps = 109/508 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 6   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVRQTPAHHTDKFAELVCSNSLRGNSLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADAA +          PA  G     DR  +   +   + S 
Sbjct: 66  VGVLKEEMRRLDSLIIKAADAARV----------PA--GGALAVDRHDFAGYITDTLKSH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N++VI  E+        II+             T  LTT    + ++ I G+ ++    
Sbjct: 114 PNVNVINEEIESIPEGYTIIA-------------TGPLTTEGLAKEIVEITGEDQLYFYD 160

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLK-TGTP-----------ARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G       P           A L+ +    ++ EK+
Sbjct: 161 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEEEFDRFYDAVLEAEAAPVNEFEKE 220

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 221 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 249

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R 
Sbjct: 250 LEDP--KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRY 307

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L  T + K    L+ AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 308 GVMHRNTFINSPDVLSETYQLKGNDHLYFAGQMTGVEGYVESAASGLVAGINVAHKLQDK 367

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
             + F R ++ IG M               + S A    + +P NA+  L P       +
Sbjct: 368 AEVVFPR-ETMIGSMA-------------YYISHANNNKNFQPMNANFGLVP------SL 407

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            +R + +  +Y Q+ N   + L++   T
Sbjct: 408 EKRIKDKKERYEQQANRALTYLENFKQT 435


>gi|330719609|gb|EGG98182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 57/84 (67%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E++  ++ Y  Y  RQM E + ++  E   +P+DF Y  +P LSNE+K+KL+ L+P  
Sbjct: 52  VAEQVVTQAKYEGYINRQMDEIERLRRHEMTRLPEDFVYDDIPGLSNEVKQKLNDLRPET 111

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L  AS+I G+TPAA++LLLI +KK
Sbjct: 112 LAAASRIPGVTPAAVSLLLIQLKK 135


>gi|290968892|ref|ZP_06560429.1| tRNA:M(5)U-54 methyltransferase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781188|gb|EFD93779.1| tRNA:M(5)U-54 methyltransferase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 437

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+   +R G      YIN P+ L PTL+ KK   LF AG
Sbjct: 280 GFQTHLKFSEQKRVFSMIPGLEEAEFVRYGVMHRNSYINSPELLLPTLQYKKEPRLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           Q+ G  GY E+AA GL+AGIN+A  +    CI FSR  +  G+
Sbjct: 340 QLTGVEGYLESAATGLLAGINAAHCAAGNACITFSRQTAIGGL 382


>gi|172057896|ref|YP_001814356.1| tRNA (uracil-5-)-methyltransferase Gid [Exiguobacterium sibiricum
           255-15]
 gi|205830333|sp|B1YIB2|TRMFO_EXIS2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|171990417|gb|ACB61339.1| gid protein [Exiguobacterium sibiricum 255-15]
          Length = 434

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      ++N P  L PT +T+    LF AG
Sbjct: 277 GFQTHLKWGEQKRIIRLIPGLENAEIVRYGVMHRNTFVNSPNLLQPTYQTRTRHDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+AR  N+ + + F + ++ +G M   +T+
Sbjct: 337 QMTGVEGYVESAASGLTAGINAARLVNEAEPVAFPK-ETMMGAMAHYITT 385


>gi|258511364|ref|YP_003184798.1| gid protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478090|gb|ACV58409.1| gid protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 437

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      YIN P  L PT + K    LF AG
Sbjct: 278 GFQTHLKWGEQKRVFRMIPGLEQAEFVRYGVMHRNTYINSPVALLPTYQAKARPTLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GL+AGIN+AR +   D + F  T S
Sbjct: 338 QMTGVEGYVESAASGLIAGINAARVAAGQDALVFPPTTS 376


>gi|292670829|ref|ZP_06604255.1| glucose-inhibited division protein [Selenomonas noxia ATCC 43541]
 gi|292647450|gb|EFF65422.1| glucose-inhibited division protein [Selenomonas noxia ATCC 43541]
          Length = 438

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 167/430 (38%), Gaps = 65/430 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GAS  L           HKT     + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAARAGASVELFEMRPLRRSPAHKTDGFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ + ADA  +          PA  G     DR  +   + + I+  
Sbjct: 64  VGVLKEEMRRLGSLIMQAADATAV----------PA--GGALAVDRAEFSDYITQHIVQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF---LRGVIHIGKLKIPA 171
            N+ V   E          I+ I   D+S++  ++  LT G     +R ++    L    
Sbjct: 112 PNISVHHAE----------ITEIPSVDDSVVIIASGPLTDGALSLAIRSLLGDAALYF-- 159

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  S  +  M   +   R   G PA ++         E+Q+            D
Sbjct: 160 -YDAAAPLVSSSSINMTAVYRASRYGKGEPAYINCPM-----NEEQY------------D 201

Query: 232 KITNRQIECGITRTNLETHRIIMEN---IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              +  +       +     I  E    ++  A    D   YGP     +E  +   GER
Sbjct: 202 AFWDALVHAEKAEVHDFEKEIFFEGCMPVEVMAARGKDTLLYGPLKPIGLEHPVT--GER 259

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q    + IPGLE+   +R G      YIN 
Sbjct: 260 PHAVVQLRQDNTEGTIYNIVGFQTRLKWPEQKHVFQMIPGLEQAEFLRYGVMHRNTYINA 319

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L PT +      +F AGQ+ G  GY E+AA GL+AG+N+AR +     + F R   +
Sbjct: 320 PRHLRPTFQLNVNECIFFAGQMTGVEGYVESAASGLMAGLNAARLARGESPLAFPRMTCH 379

Query: 408 IGVMIDDLTS 417
            G +   +TS
Sbjct: 380 -GALAHYITS 388


>gi|312126812|ref|YP_003991686.1| gid protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776831|gb|ADQ06317.1| gid protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 436

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 168/445 (37%), Gaps = 95/445 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +++VIG G AG EAA V  K G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVITKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A A  ++             G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAQATSVE------------AGQALAVDRYKFSEYITQKIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV    TE       V +D  ++ C T  LTT + L  +            
Sbjct: 110 NELIEVIHEEV----TE-------VPRDKVVVVC-TGPLTTESLLSDI------------ 145

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
                 + L +S   + FD        P  L           K   D     F+   +K 
Sbjct: 146 ------SKLCSSKNLYFFDAA-----APIVL-----------KDSIDFSKAFFASRYNKG 183

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDI-KSYGPRYCPSIED------KIVRFG 286
           +N  I C +T+   E  R   E +    I   D  K      C  IE+        +RFG
Sbjct: 184 SNDYINCPMTKE--EYERFYWELVNAEVIEVKDFEKDLLFEGCMPIEEMARRGIDTIRFG 241

Query: 287 E---------RNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
                     R G   +    L  +  +  +    G  T L    Q +  R IPGLE   
Sbjct: 242 PLKPVGIIDPRTGKMPYAVVQLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAE 301

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G   +  YIN P+ L   L  KK   +F AGQI G  GY E+AA G++AGIN+AR+
Sbjct: 302 FVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAGQITGVEGYLESAATGIIAGINAARQ 361

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTS 417
               + +     ++ IG +I+ +T+
Sbjct: 362 VLGKEPVSLP-PNTCIGALIEYITT 385


>gi|148265708|ref|YP_001232414.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter uraniireducens
           Rf4]
 gi|205830335|sp|A5G7S3|TRMFO_GEOUR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146399208|gb|ABQ27841.1| gid protein [Geobacter uraniireducens Rf4]
          Length = 435

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 172/432 (39%), Gaps = 71/432 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + +IG G AGCEAA  AA  G +  L   K          P +  L   + +R  ++L+ 
Sbjct: 6   LTIIGAGLAGCEAAWQAAGRGVAVTLHEMKPEKYSPAHHLPGLAELVCSNSLRG-ESLEN 64

Query: 68  LMGRVADAAGIQFRVLN---VKKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVIQ 121
            +G + +    + R L    ++   A R P   A   DR L+   +  +I +   ++V+ 
Sbjct: 65  AVGLLKE----ELRRLGSLFMEAALATRVPAGGALAVDRGLFSAFITDKIENHPLIEVVH 120

Query: 122 GEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL----------KIP 170
           GEVA    +  +I +S  +  +++   +++   TG +L     I  +             
Sbjct: 121 GEVAEIPADGTVIVASGPLTSDAL--AASIGKYTGDYLYFYDAIAPIVTSDSIDLSKAFR 178

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           A R G    +   N       D    K    A L  + +   + EK    E  +P   M 
Sbjct: 179 ASRYGKGDGDDYLNC----PLDEAEYKAFIAALLAAEKVAAKEFEKVVHFEGCMPIEEMA 234

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCPSIE-DKIVRFG 286
           ++              L+T R             G +K  G   PR    IE   +V+  
Sbjct: 235 ER-------------GLDTLRF------------GPMKPVGLIDPRT--GIEPHAVVQLR 267

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           + N         G  T + YP           Q +  RTIPGL K   +R G      +I
Sbjct: 268 QENREGTLFNLVGFQTKLTYPE----------QQRIFRTIPGLGKAEFVRLGSMHRNTFI 317

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P+ L  T + K+   +  AGQI G  GY E+AA G +AG+N AR + K + +    + 
Sbjct: 318 NAPQLLLSTFQLKREPRILFAGQITGVEGYVESAASGFLAGLNGARLA-KGEALIVPPSV 376

Query: 406 SYIGVMIDDLTS 417
           + +G +++ +TS
Sbjct: 377 TALGALVNHITS 388


>gi|222054658|ref|YP_002537020.1| gid protein [Geobacter sp. FRC-32]
 gi|254789173|sp|B9M5T8|TRMFO_GEOSF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221563947|gb|ACM19919.1| gid protein [Geobacter sp. FRC-32]
          Length = 437

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 162/428 (37%), Gaps = 67/428 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDALDG 67
           +IGGG AGCEAA  AA+ G +  L   K          P +  L   + +R   +D   G
Sbjct: 8   IIGGGLAGCEAAWQAAERGVAVKLHEMKPERYSPAHHLPGLAELVCSNSLRGESLDNAVG 67

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVIQGEV 124
           L+      +G  F    +    A R P   A   DR+L+   +  +I +   ++V+ GEV
Sbjct: 68  LLKEELKRSGSLF----IAAALATRVPAGGALAVDRQLFSDYITEKITNHPLIEVVYGEV 123

Query: 125 AGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFL-----------RGVIHIGKLKIPAG 172
           A    E   I++S  +  + +   +++   TG +L              I  GK    A 
Sbjct: 124 AQIPEEGIVIVASGPLTSDRL--AASIATHTGNYLYFYDAIAPIVTADSIDFGK-AFRAS 180

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R G    +   N  M    D    K    A L G  +     EK    E  +P   M ++
Sbjct: 181 RYGKGDGDDYLNCPM----DETTYKAFVAALLGGDKVAAKDFEKVVHFEGCMPIEEMAER 236

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG-PRYCPSIED-KIVRFGERNG 290
                          ET R             G +K  G P     +E   +V+  + N 
Sbjct: 237 -------------GPETLRF------------GPMKPVGLPDPRTGVEPYAVVQLRQENR 271

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
                   G  T + Y            Q +    IPGLE  + +R G      +IN P+
Sbjct: 272 DGTLFNLVGFQTKLTYSE----------QKRIFSLIPGLEHADFVRLGSMHRNTFINAPQ 321

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PT + K    +  AGQI G  GY E+A  G +AGIN AR + K   +      + +G
Sbjct: 322 LLLPTFQLKNTPRILFAGQITGVEGYVESAGSGFMAGINVARLA-KGGALTVPPPTTALG 380

Query: 410 VMIDDLTS 417
            ++  +TS
Sbjct: 381 ALVHHITS 388


>gi|147677582|ref|YP_001211797.1| tRNA (uracil-5-)-methyltransferase Gid [Pelotomaculum
           thermopropionicum SI]
 gi|189040808|sp|A5D2W5|TRMFO_PELTS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146273679|dbj|BAF59428.1| NAD(FAD)-utilizing enzyme possibly [Pelotomaculum thermopropionicum
           SI]
          Length = 437

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     + D   R G R    + L  E     +    G  T L  + Q +  R IPGL
Sbjct: 243 YGPMKPVGLIDP--RTGRRPYAVVQLRQENAAATLFNMVGFQTGLKWDEQKRVFRLIPGL 300

Query: 330 EKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E+   +R G      +IN P  L PT +T+K   LF AGQI G  GY E+AA GL+AGIN
Sbjct: 301 EEAEFVRFGVMHRNTFINSPVLLHPTFQTRKNPALFFAGQITGVEGYVESAASGLMAGIN 360

Query: 389 SARKSNKLDCICFSRTDSY 407
           +AR     + + F R  ++
Sbjct: 361 AARLLAGKEPLVFPRNTAH 379


>gi|56964042|ref|YP_175773.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus clausii KSM-K16]
 gi|81170595|sp|Q5WFP8|TRMFO_BACSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56910285|dbj|BAD64812.1| glucose inhibited division protein Gid [Bacillus clausii KSM-K16]
          Length = 436

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 22/174 (12%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE  +I+R G      ++N P  L PT ++KK S LF AG
Sbjct: 280 GFQTHLKWGPQKEVIRMIPGLENADIVRYGVMHRNTFLNSPNLLKPTYQSKKRSDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN+ + +   +   F   ++ IG M   +T+          
Sbjct: 340 QMTGVEGYVESAAAGLVAGINAFKWTQSQELAVFPE-ETMIGSMAAYITNANAK------ 392

Query: 428 TSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQ---KRFAKYIQEYNFLRSL 477
                   + +P NA+  L  P+ +++    ER +   KR  + IQ  NF++ +
Sbjct: 393 --------TFQPMNANFGLVPPLNVRIKAKKERYEALAKRALESIQ--NFMKEV 436


>gi|312792640|ref|YP_004025563.1| gid protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179780|gb|ADQ39950.1| gid protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 436

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 171/445 (38%), Gaps = 95/445 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +++VIG G AG EAA   AK G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANAIAKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A  ++             G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEATSVE------------AGQALAVDRYKFSEYITQKIRQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV    TE       V +D  ++ C T  LTT + L  +           +
Sbjct: 110 NELIEVIHEEV----TE-------VPRDKVVVVC-TGPLTTESLLSDI----------SK 147

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +S +   F++               P  L           K   D     F+   +K 
Sbjct: 148 LCESKNLYFFDA-------------AAPIVL-----------KDSIDFSKAFFASRYNKG 183

Query: 234 TNRQIECGITRTNLE--------THRIIMENIKHSAIYSG------------DIKSYGPR 273
           +N  I C +T+   E           I +++ +   ++ G            D   +GP 
Sbjct: 184 SNDYINCPMTKEEYEKFYWELVNAEVIEVKDFEKDLLFEGCMPIEEMARRGIDTMRFGPL 243

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               I D   R G+     + L  +  +  +    G  T L    Q +  R IPGLE   
Sbjct: 244 KPVGIIDP--RTGKMPYAVVQLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAE 301

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G   +  YIN P+ L   L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+
Sbjct: 302 FVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQ 361

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTS 417
               + +    + + IG +I+ +T+
Sbjct: 362 VLGKEPVSLP-SSTCIGALIEYITT 385


>gi|15615029|ref|NP_243332.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus halodurans C-125]
 gi|26006776|sp|Q9KA24|TRMFO_BACHD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|10175086|dbj|BAB06185.1| glucose-inhibited division protein [Bacillus halodurans C-125]
          Length = 435

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      +IN P  L PT + KK   LF AG
Sbjct: 279 GFQTHLKWGPQKEVIQLIPGLENAEIVRYGVMHRNTFINSPNLLKPTYQYKKRKDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA GLVAG+N+AR     + + F  T + +G M + +T+
Sbjct: 339 QITGVEGYVESAAAGLVAGLNAARLVQSKELVVFPDT-TMLGSMANYITT 387


>gi|320353067|ref|YP_004194406.1| gid protein [Desulfobulbus propionicus DSM 2032]
 gi|320121569|gb|ADW17115.1| gid protein [Desulfobulbus propionicus DSM 2032]
          Length = 443

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLET 357
           G  T + YP           Q +  RTIPGLE+   +R G      ++  P+ L PTLET
Sbjct: 284 GFQTKLTYPE----------QQRVFRTIPGLERAVFLRLGSIHRNTFVCAPRVLAPTLET 333

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           ++++GLF+AGQ++G  GY E+A+ GL+AGIN+ R
Sbjct: 334 RRVAGLFVAGQLSGVEGYIESASMGLLAGINAGR 367



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
          + R   + VIGGG AGCEAA  AA  G +  L           H+   +G + C+ ++  
Sbjct: 1  MAREARITVIGGGLAGCEAAWQAAAQGVAVELYEMKPHRFSPAHELPQLGELVCSNSLRS 60

Query: 53 ----LGKGHLVREIDALDGLMGRVADAAGI 78
                 G L  E+  LD L+ R AD+  +
Sbjct: 61 NAVDSAAGLLKEEMRRLDSLVMRAADSTAV 90


>gi|302389649|ref|YP_003825470.1| gid protein [Thermosediminibacter oceani DSM 16646]
 gi|302200277|gb|ADL07847.1| gid protein [Thermosediminibacter oceani DSM 16646]
          Length = 437

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T+L    Q +    IPGL+    +R G+     +I +PK + P LE K  SGLF AG
Sbjct: 277 GFQTSLKWPEQKRVFSKIPGLKDPEFVRYGFIHRNTFIMSPKFMQPWLELKTTSGLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA G+VAG+N  R+   LD I F   ++ +G +   +TS
Sbjct: 337 QITGVEGYIESAASGIVAGVNMVRRLKGLDPITFP-LETVVGSLCHYITS 385


>gi|114566377|ref|YP_753531.1| gid protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122318545|sp|Q0AYP4|TRMFO_SYNWW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114337312|gb|ABI68160.1| gid protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 436

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE+   +R G      YIN PK L+P+L+ KK   +F AG
Sbjct: 278 GFQTRMRWGEQERIFRLIPGLEQAEFVRYGVMHRNTYINSPKLLWPSLQCKKRPEIFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA G++AGIN+AR       +      + IG ++D ++S
Sbjct: 338 QITGVEGYMESAATGIIAGINAARWLQG-KALLTPHKATIIGALLDFISS 386



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 26/143 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLG---------ASTALITHKTSTIGSMSCNPAIGG----LG 54
           V VIGGG AGCEAA   A+ G            A   H+T+ +G + C+ ++        
Sbjct: 4   VNVIGGGLAGCEAAYYLAQKGIRVRLWEMRPQKATAVHRTADLGELVCSNSLKSDQPNTA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L RE+  L  L+   A+ A +          PA  G     DREL+   + + IL+ 
Sbjct: 64  QGLLKREMRILGSLLLSCAEKARV----------PA--GSALAVDRELFAGLVSQAILAC 111

Query: 115 ENLDVIQGEVAGFNT-EKNIISS 136
            ++++ + EV    T E +I++S
Sbjct: 112 PSIELCREEVNRVPTGELSIVAS 134


>gi|225181362|ref|ZP_03734806.1| gid protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167943|gb|EEG76750.1| gid protein [Dethiobacter alkaliphilus AHT 1]
          Length = 438

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN PK L PTL+ K+   LF AG
Sbjct: 281 GFQTRLRWPEQKRVFRMIPGLENAEFARYGVMHRNTYINSPKTLQPTLQFKENDKLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           Q+ G  GY E+AA GLVAGIN+AR ++  D + +    ++
Sbjct: 341 QVTGVEGYVESAAMGLVAGINAARVADGQDPLVWPNETAH 380


>gi|154686029|ref|YP_001421190.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus amyloliquefaciens
           FZB42]
 gi|171855000|sp|A7Z4N3|TRMFO_BACA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154351880|gb|ABS73959.1| Gid [Bacillus amyloliquefaciens FZB42]
          Length = 435

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V+I+R G      +IN P  L PT + K+ + LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVDIVRYGVMHRNTFINSPSLLNPTYQFKQRNDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+     D + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLGQDLVTFPQ-ETAIGSMAHYITT 387


>gi|308173575|ref|YP_003920280.1| tRNA:m(5)U-54 methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307606439|emb|CBI42810.1| tRNA:m(5)U-54 methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328553492|gb|AEB23984.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus amyloliquefaciens
           TA208]
 gi|328911716|gb|AEB63312.1| m(5)U-54 methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 435

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V+I+R G      +IN P  L PT + K+ + LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVDIVRYGVMHRNTFINSPSLLNPTYQFKQRNDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+     D + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLGQDLVTFPQ-ETAIGSMAHYITT 387


>gi|312898772|ref|ZP_07758161.1| tRNA:M(5)U-54 methyltransferase [Megasphaera micronuciformis F0359]
 gi|310620203|gb|EFQ03774.1| tRNA:M(5)U-54 methyltransferase [Megasphaera micronuciformis F0359]
          Length = 437

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 11/123 (8%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + NG        G  T + +P           Q +    IPGLE+   +R G   
Sbjct: 263 VVQLRQDNGSATLYNIVGFQTHLKFPE----------QKRVFSMIPGLEEAEFVRYGVMH 312

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P+ L PTL+ +K   LF AGQ+ G  GY E+A+ GL+AGIN+A+   +  C+ 
Sbjct: 313 RNSYINSPELLLPTLQYRKRDSLFFAGQLTGVEGYLESASMGLLAGINAAKLCKEEACVT 372

Query: 401 FSR 403
           F +
Sbjct: 373 FPK 375


>gi|322382310|ref|ZP_08056217.1| tRNA (uracil-5-)-methyltransferase Gid-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153663|gb|EFX46038.1| tRNA (uracil-5-)-methyltransferase Gid-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 442

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN PK L PT + K    LF AG
Sbjct: 280 GFQTHLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSPKLLEPTYQFKHRPSLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AGIN+AR +    C+ F R ++ +G M   +T+
Sbjct: 340 QMTGVEGYVESAASGLIAGINAARLAKGESCLTFPR-ETALGGMAHYITT 388


>gi|311068134|ref|YP_003973057.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus atrophaeus 1942]
 gi|310868651|gb|ADP32126.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus atrophaeus 1942]
          Length = 435

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN P  L PT + K  S LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLEPTYQFKNRSDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+   + + + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLEQELVTFPQ-ETAIGSMAHYITT 387


>gi|81428598|ref|YP_395598.1| hypothetical protein LSA0987 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610240|emb|CAI55289.1| Hypotehtical protein, GidA family (C-terminal fragment)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 186

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           KI R GE+    + L  +     +    G  T L    Q +  R IPGLE    +R G  
Sbjct: 2   KIPRLGEQPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVM 61

Query: 341 IEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++ +P  L PT ++K+ S LF AGQ+ G  GY E+AA GLVAGIN++R +   + +
Sbjct: 62  HRNTFMKSPDVLLPTYQSKQRSDLFFAGQMTGVEGYVESAASGLVAGINASRLALDTEPV 121

Query: 400 CFSRTDSYIGVMIDDLT 416
            F  T + +G M   +T
Sbjct: 122 TFPATTA-MGSMAHYIT 137


>gi|89098653|ref|ZP_01171535.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
 gi|89086615|gb|EAR65734.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
          Length = 435

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 167/434 (38%), Gaps = 80/434 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----GKG 56
           VIG G AG EAA   AK G    L           H T     + C+ ++         G
Sbjct: 8   VIGAGLAGSEAAWQIAKRGIKVNLYEMRPVKQTPAHHTDKFAELVCSNSLRANNLTNAVG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++   ADA  +          PA  G     DR  +   +  ++ +  N
Sbjct: 68  VLKEEMRMLDSVIINSADACAV----------PA--GGALAVDRHEFAGKVTEQVRNHPN 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + V+  EV        +I++  +   S+ +           L G  H+      A  + +
Sbjct: 116 VTVMNEEVTEIPEGITVIATGPLTSESLSKQLKE-------LTGEDHL-YFYDAAAPIIE 167

Query: 177 SPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADERLI 224
             S ++  +++K  +D G              +T   A +  +T+   + EK+   E  +
Sbjct: 168 KDSINMEKAYLKSRYDKGEAAYINCPMTEEEFETFYNALISAETVPLKEFEKEIFFEGCM 227

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           P   M ++     +                               +GP     +ED   R
Sbjct: 228 PIEVMANRGKKTML-------------------------------FGPMKPVGLEDP--R 254

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
            G+R    + L  +     +    G  T L    Q + +R IPGLE+  I+R G      
Sbjct: 255 TGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVLRLIPGLEEAEIVRYGVMHRNT 314

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           +IN PK L  T + +   GLF AGQ+ G  GY E+AA GL+AGIN+AR +   + + F  
Sbjct: 315 FINSPKVLEATYQFRNRDGLFFAGQMTGVEGYVESAASGLIAGINAARLAEGKELLEFPH 374

Query: 404 TDSYIGVMIDDLTS 417
            ++ IG M   +T+
Sbjct: 375 -ETAIGSMARYITT 387


>gi|312865306|ref|ZP_07725534.1| tRNA:m(5)U-54 methyltransferase [Streptococcus downei F0415]
 gi|311099417|gb|EFQ57633.1| tRNA:m(5)U-54 methyltransferase [Streptococcus downei F0415]
          Length = 443

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L PT ++KK + LF AG
Sbjct: 288 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNFYMDSPNLLTPTFQSKKQANLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR  N  + + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFNGQEPLIFPETTA 386


>gi|167465453|ref|ZP_02330542.1| Gid [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 314

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN PK L PT + K    LF AG
Sbjct: 152 GFQTHLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSPKLLEPTYQFKHRPSLFFAG 211

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AGIN+AR +    C+ F R ++ +G M   +T+
Sbjct: 212 QMTGVEGYVESAASGLIAGINAARLAKGESCLTFPR-ETALGGMAHYITT 260


>gi|222530146|ref|YP_002574028.1| tRNA (uracil-5-)-methyltransferase Gid [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254789164|sp|B9MM32|TRMFO_ANATD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222456993|gb|ACM61255.1| gid protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 436

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 115/505 (22%), Positives = 186/505 (36%), Gaps = 110/505 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +++VIG G AG EAA V +K G    L           HK      + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVISKFGIKVKLFEMKPKKFSPAHKIDNFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A  ++             G     DR  +   + + I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEATSVE------------AGQALAVDRYKFSEYITQRIKH 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +I  EV     +K ++             ST  LTT + L  +            
Sbjct: 110 NGLISIIHEEVTEVPRDKVVV------------VSTGPLTTESLLSDI------------ 145

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
                 + L NS   + FD        P  L           K   D     F+   +K 
Sbjct: 146 ------SKLCNSKNLYFFDAA-----APIVL-----------KDSIDFSKAFFASRYNKG 183

Query: 234 TNRQIECGITRTNLE--------THRIIMENIKHSAIYSG------------DIKSYGPR 273
           +N  I C +T+   E           I +++ +   ++ G            D   YGP 
Sbjct: 184 SNDYINCPMTKEEYERFYWELVNAEVIEVKDFEKDLLFEGCMPIEEMARRGIDTMRYGPL 243

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               I D   R G+     + L  +  +  +    G  T L    Q +  R IPGLE   
Sbjct: 244 KPVGIIDP--RTGKMPYAVVQLRKDTQDGKLYNMVGFQTRLKWSEQKRVFRLIPGLENAE 301

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G   +  YIN P+ L   L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+
Sbjct: 302 FVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQ 361

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
               + I     ++ IG +I+ +T+     P + F          +P NA+  +  I  +
Sbjct: 362 ILGKEPISLP-PNTCIGALIEYITT-----PKKDF----------QPMNANYGIISIDDE 405

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSL 477
           +  I ++ +++     +  N  R L
Sbjct: 406 ISKIKDKEKRKLLIAQKSLNICREL 430


>gi|222151084|ref|YP_002560238.1| glucose-inhibited division protein gid [Macrococcus caseolyticus
           JCSC5402]
 gi|222120207|dbj|BAH17542.1| glucose-inhibited division protein gid [Macrococcus caseolyticus
           JCSC5402]
          Length = 433

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 160/430 (37%), Gaps = 80/430 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V +IG G AG EAA   AK G    L           H T     + C+ ++ G      
Sbjct: 4   VNIIGAGLAGSEAAYQLAKRGIKVKLYEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +          PA  G     DR  +   +   +   
Sbjct: 64  VGVLKEEMRRLDSLIIKAADNASV----------PA--GGALAVDRHEFSGYVTDTLKQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++VI  E+        II++  +   S+ +           L G  H+      A  +
Sbjct: 112 ANIEVINEEITEIPDGPTIIATGPLTTESLSKQIQA-------LTGQDHL-YFYDAAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G               T   A L+ + +   + EK+   E 
Sbjct: 164 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNTFYDALLEAEVVPLKEFEKEIYFEG 223

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M  +           R  L                      +GP     +ED  
Sbjct: 224 CMPFEEMAKR----------GRKTL---------------------LFGPMKPVGLEDP- 251

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + ++ IPGLE V ++R G    
Sbjct: 252 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEILKLIPGLENVEVVRYGVMHR 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L  T + K    LFLAGQ+ G  GY E+AA GLVAGIN A+       I F
Sbjct: 311 NTFINSPTNLQQTYQFKGNDSLFLAGQMTGVEGYVESAASGLVAGINMAKYVEDKPVITF 370

Query: 402 SRTDSYIGVM 411
              ++ IG M
Sbjct: 371 PE-NTVIGSM 379


>gi|73662826|ref|YP_301607.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82592878|sp|Q49X36|TRMFO_STAS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|72495341|dbj|BAE18662.1| glucose-inhibited division protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 435

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 163/430 (37%), Gaps = 80/430 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGVKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRQLDSLIISAADKARV----------PA--GGALAVDRHDFAGYVTETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II++  +  + +   + +V  TG   +  ++      P   +
Sbjct: 113 PNITVLNEEINSIPEGYTIIATGPLTTDKL--ANEIVEATG---KDQLYFYDAAAP---I 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G               T   A ++ +    ++ EK+   E 
Sbjct: 165 IEKDSIDMNKVYLKSRYDKGEAAYLNCPMTEDEFNTFYDALMEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++           R  L                      +GP     +ED  
Sbjct: 225 CMPFEVMAER----------GRKTL---------------------LFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + GER    + L  +     +    G  T L    Q   IR IPGLE V I+R G    
Sbjct: 253 -KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKDVIRLIPGLENVEIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L  T E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLTETYELKGREELYFAGQMTGVEGYVESAASGLVAGINVAHKMLNKGEVIF 371

Query: 402 SRTDSYIGVM 411
            R ++ IG M
Sbjct: 372 PR-ETMIGSM 380


>gi|197119083|ref|YP_002139510.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter bemidjiensis Bem]
 gi|259547951|sp|B5EHR5|TRMFO_GEOBB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|197088443|gb|ACH39714.1| tRNA (5-methyl-U54)-methylenetransferase/reductase [Geobacter
           bemidjiensis Bem]
          Length = 435

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 185/454 (40%), Gaps = 83/454 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           ++ VIGGG AGCEAA  AAK G    L   K +        P +  L   + +R  D+L+
Sbjct: 4   EITVIGGGLAGCEAAWQAAKRGVKVRLFEMKPNCYSEAHHLPGLSELVCSNSLRG-DSLE 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVIQGE 123
             +G + +    + + L ++   A + P   A   DR+L+   +   I S   ++V++ E
Sbjct: 63  NAVGLLKEELR-RLQSLFMEGAEATKVPAGGALAVDRDLFSQYITSRIESHPLIEVVREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRMGDSPSNS 181
           V     E                   VVL +G    G++   IG+L        D+ +  
Sbjct: 122 VTRIPEE-----------------GIVVLASGPLTSGLLAEEIGRLAGSYLYFYDAIAPI 164

Query: 182 LFNSFMKFD--FDTGRLKTGTPARLDGKTII---WDKTEKQ------FADERLIPFSFMT 230
           +    + +D  F   R   G     DG   +    D+ + Q       A E++ P SF  
Sbjct: 165 VAADSIDYDKAFRASRYGKG-----DGDDYLNCPMDEEQYQAFVREIVAAEKVEPKSF-- 217

Query: 231 DKITNRQ----IECGITRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCPSIE-DKI 282
           +K+ + +    IE   +R   ET R             G +K  G   PR    +E   +
Sbjct: 218 EKVVHFEGCMPIEEMASR-GPETLRF------------GPMKPVGLVDPRV--GVEPHAV 262

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           ++  + N         G  T + +P           Q +  R IPGLE    +R G    
Sbjct: 263 IQLRQENREATMYNLVGFQTKLTWPE----------QKRIFRMIPGLENAQFLRLGSMHR 312

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P+ L  T + K    +F AGQI G  GY E+A+ G VAG+N+AR +   + +  
Sbjct: 313 NTFINAPELLMATCQLKSDQRIFFAGQITGVEGYVESASSGFVAGVNAARLAQG-EGLVV 371

Query: 402 SRTDSYIGVMIDDLTS--KGVLEP----YRMFTS 429
              ++ IG +   +T+   G  +P    Y +F S
Sbjct: 372 PPAETAIGALARHITNTEAGHFQPMNVNYGLFPS 405


>gi|229552208|ref|ZP_04440933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus rhamnosus LMS2-1]
 gi|258539621|ref|YP_003174120.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus Lc
           705]
 gi|229314430|gb|EEN80403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151297|emb|CAR90269.1| Glucose inhibited division protein A [Lactobacillus rhamnosus Lc
           705]
          Length = 440

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+ + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRADLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AG N+AR +     I F +T           T+ G +  Y   
Sbjct: 338 QMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQT-----------TAMGAMAHYITH 386

Query: 428 TSRAEYRISLRPDNAD-NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           TS + +    +P NA+   + P+ +K+    ER Q+   + + +    ++ L+S+
Sbjct: 387 TSPSHF----QPMNANFGIMPPLAIKVRNKKERNQQLAERALNDLATFQTELQSV 437


>gi|157692292|ref|YP_001486754.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pumilus SAFR-032]
 gi|166989558|sp|A8FD77|TRMFO_BACP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157681050|gb|ABV62194.1| glucose-inhibited division protein A [Bacillus pumilus SAFR-032]
          Length = 434

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+  I+R G      +IN P  L PT + K    LF AG
Sbjct: 278 GFQTHLKWGDQKEVFRLIPGLEEAEIVRYGVMHRNTFINSPSLLKPTYQFKNREDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN+AR     + +     ++ IG M   +TS          
Sbjct: 338 QMTGVEGYVESAASGLVAGINAARFVKGEELVTLPE-ETAIGSMAYYITSTN-------- 388

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
                 + S +P NA+  L      LG   + +Q+R+A+Y +
Sbjct: 389 ------KKSFQPMNANFGLL---KDLGVRIKNKQERYAEYAK 421


>gi|194015077|ref|ZP_03053694.1| tRNA:M(5)U-54 methyltransferase [Bacillus pumilus ATCC 7061]
 gi|194014103|gb|EDW23668.1| tRNA:M(5)U-54 methyltransferase [Bacillus pumilus ATCC 7061]
          Length = 434

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+  I+R G      +IN P  L PT + K    LF AG
Sbjct: 278 GFQTHLKWGDQKEVFRLIPGLEEAEIVRYGVMHRNTFINSPSLLKPTYQFKNREDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN+AR     + +     ++ IG M   +TS          
Sbjct: 338 QMTGVEGYVESAASGLVAGINAARFVKGEELVTLPE-ETAIGSMAYYITSTN-------- 388

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
                 + S +P NA+  L      LG   + +Q+R+A+Y +
Sbjct: 389 ------KKSFQPMNANFGLL---KDLGVRIKNKQERYAEYAK 421


>gi|255659256|ref|ZP_05404665.1| tRNA:M(5)U-54 methyltransferase [Mitsuokella multacida DSM 20544]
 gi|260848711|gb|EEX68718.1| tRNA:M(5)U-54 methyltransferase [Mitsuokella multacida DSM 20544]
          Length = 445

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 156/407 (38%), Gaps = 70/407 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VI++G G AG EAA  AAK GA   L           HKT+    + C+ ++ G G    
Sbjct: 4   VIIVGAGLAGSEAAWQAAKQGAEVTLYEMRPAKSTPAHKTAGFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   ADA  +          PA  G     DR  +   +  ++   
Sbjct: 64  VGVLKEEMRRLGSIIMEAADATRV----------PA--GGALAVDRHGFSDYVTAKVTEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV            I M+++++   ++  LT G+    +         A R 
Sbjct: 112 PNITVVHEEV----------PKIPMEEDAVTIVASGPLTAGSLAEDI---------AART 152

Query: 175 GD---------SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
           G+         +P  SL +  M   +   R   G  A ++    +  +  + F +  +  
Sbjct: 153 GNDSLYFYDAAAPIVSLESVDMTKAYRASRYGKGEAAYIN--CPMTKEEYEAFWNALVTA 210

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
               T      +   G     +   R I            D   YGP     +E  +   
Sbjct: 211 EKAPTKDFEKEKFFEGCMPVEVMASRGI------------DTLLYGPLKPVGLEHPVT-- 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G R    + L  +  +  +    G  T L    Q +    IPGLE    +R G      +
Sbjct: 257 GVRPYAVVQLRQDNASATLYNIVGFQTHLKWPEQRRVFGMIPGLEHAEFLRYGVMHRNTF 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           +N P+ + PTL+ +    L  AGQ+ G  GY E+A+ GLVAG+N+AR
Sbjct: 317 LNSPRHMRPTLQLRGEDRLLFAGQMTGVEGYIESASSGLVAGVNAAR 363


>gi|207111593|ref|ZP_03245755.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 43

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           D+I P EL  TLETKKI GL+LAGQINGTTGYEEAAAQGL+AG
Sbjct: 1   DFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAG 43


>gi|169830785|ref|YP_001716767.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Desulforudis
           audaxviator MP104C]
 gi|205830331|sp|B1I258|TRMFO_DESAP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|169637629|gb|ACA59135.1| gid protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 439

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 167/433 (38%), Gaps = 67/433 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG- 54
           S  VIV+G G AG EA+    + G    L           HKT     + C+ ++     
Sbjct: 2   SGGVIVVGAGLAGAEASWQLVRRGVPVVLYEMRPRKCTPAHKTGDFAELVCSNSLRAEAL 61

Query: 55  ---KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G L  E+  L  L+   ADA           + PA  G     DR+L+  A+   +
Sbjct: 62  TNAVGLLKEEMRRLGSLIMACADA----------HRVPA--GGALAVDRQLFAAAVTERL 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF------LRGVIHIG 165
            S   + V + E+    T + +I             +T  LT+         L G  H+ 
Sbjct: 110 TSHRLVTVCREEITTIPTAELVI------------LATGPLTSDALADELRRLTGQEHLY 157

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A      P  +L +      F + R   G PA L+        + +++  ER   
Sbjct: 158 FFDAVA------PIVTLESIDQDRVFRSSRYGRGDPAYLNCPM-----SREEY--ERFWE 204

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                ++ T    E        ETH      ++  A    +   YGP     + D   R 
Sbjct: 205 ALVAAERATRHTFE-------RETHFEGCLPVEVIAARGRETLLYGPLKPVGLVDP--RT 255

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           GER    + L  +     +    G  T L    Q +    IPGLE+   +R G      Y
Sbjct: 256 GERPYAVVQLRQDNRAGTLYNLVGFQTNLKWGEQRRVFSMIPGLEQAEFVRYGVMHRNTY 315

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P  L P L  K   GLF+AGQ++G  GY E+AA GLVAG+N+AR    L+ + F   
Sbjct: 316 INAPVLLSPNLMLKSRPGLFIAGQLSGVEGYVESAAAGLVAGLNAARLYKGLEPLVFPPE 375

Query: 405 DSYIGVMIDDLTS 417
            ++ G +I+ + +
Sbjct: 376 TAH-GALINYIVT 387


>gi|319649575|ref|ZP_08003731.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
 gi|317398737|gb|EFV79419.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
          Length = 435

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      +IN PK L  T + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFINSPKVLRATYQFKNRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+AR     D I F   ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAARLVKGEDPIEFPH-ETAIGSMARYITT 387


>gi|227553451|ref|ZP_03983500.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
 gi|227177427|gb|EEI58399.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
          Length = 242

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++KK   LF AG
Sbjct: 85  GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAG 144

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR +   + I F R ++ +G M
Sbjct: 145 QMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPR-ETTLGSM 187


>gi|312621561|ref|YP_004023174.1| gid protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202028|gb|ADQ45355.1| gid protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 436

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 185/505 (36%), Gaps = 110/505 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +++VIG G AG EAA V  K G    L           HK      + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVITKFGIKVKLFEMKPKKFSPAHKIDNFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A  ++             G     DR  +   + + I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEATSVE------------AGQALAVDRYKFSEYITQRIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + VI  EV     +K ++             ST  LTT + L  +            
Sbjct: 110 NGLISVIHEEVTEVPRDKVVV------------VSTGPLTTESLLSDI------------ 145

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
                 + L NS   + FD        P  L           K   D     F+   +K 
Sbjct: 146 ------SKLCNSKNLYFFDAA-----APIVL-----------KDSIDFSKAFFASRYNKG 183

Query: 234 TNRQIECGITRTNLE--------THRIIMENIKHSAIYSG------------DIKSYGPR 273
           +N  I C +T+   E           I +++ +   ++ G            D   YGP 
Sbjct: 184 SNDYINCPMTKEEYERFYWELVNAEVIEVKDFEKDLLFEGCMPIEEMARRGIDTMRYGPL 243

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               I D   R G+     + L  +  +  +    G  T L    Q +  R IPGLE   
Sbjct: 244 KPVGIIDP--RTGKMPYAVVQLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAE 301

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G   +  YIN P+ L   L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+
Sbjct: 302 FVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQ 361

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
               + I     ++ IG +I+ +T+     P + F          +P NA+  +  I  +
Sbjct: 362 ILGKEPISLP-PNTCIGALIEYITT-----PKKDF----------QPMNANYGIISIDDE 405

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSL 477
           +  I ++ +++     +  N  R L
Sbjct: 406 ISKIKDKEKRKLLIAQKSLNICREL 430


>gi|260892474|ref|YP_003238571.1| gid protein [Ammonifex degensii KC4]
 gi|260864615|gb|ACX51721.1| gid protein [Ammonifex degensii KC4]
          Length = 437

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      ++N P  L PTL  KK  GLF AG
Sbjct: 277 GFQTNLKWSEQKRVFRLIPGLERAEFVRYGVMHRNTFLNAPILLEPTLLCKKKPGLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA GLVAGIN+AR       + F    ++ G +++ +T+
Sbjct: 337 QITGVEGYVESAAAGLVAGINAARLVRGEKPLVFPPETAH-GALLNYITT 385


>gi|258514509|ref|YP_003190731.1| gid protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778214|gb|ACV62108.1| gid protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 439

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L  + Q +    IPGLE+ + +R G      YIN P  L PTLE K    LF AG
Sbjct: 280 GFQTHLKWDEQRRVFSMIPGLEQADFVRMGVMHRNTYINSPALLLPTLECKIRPQLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           Q+ G  GY E+AA GL+AGIN++R + +   + F    ++ G + + +T+ G
Sbjct: 340 QMTGVEGYVESAAAGLLAGINASRLACEKAPLVFPAETAH-GSLFNYITAAG 390


>gi|297617130|ref|YP_003702289.1| gid protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144967|gb|ADI01724.1| gid protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 439

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L  + Q +  R IPGLEK   +R G      YIN P+ L PTL      G+F AG
Sbjct: 280 GFQTRLRFKEQERVFRLIPGLEKAEFVRYGVMHRNTYINSPRLLEPTLAFTPKDGVFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA G++AG+N+ R +     +   RT + IG +   +TS
Sbjct: 340 QITGCEGYMESAATGILAGLNAVRLAAGKPLLVLPRT-TMIGALCHHITS 388


>gi|327535214|gb|AEA94048.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis OG1RF]
          Length = 435

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +   + I F R ++ +G M
Sbjct: 359 AARLAKGEEPIEFPR-ETTLGSM 380


>gi|315172223|gb|EFU16240.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1346]
          Length = 435

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +   + I F R ++ +G M
Sbjct: 359 AARLAKGEEPIEFPR-ETTLGSM 380


>gi|315145128|gb|EFT89144.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2141]
 gi|315160538|gb|EFU04555.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0645]
 gi|323480810|gb|ADX80249.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecalis 62]
          Length = 435

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +   + I F R ++ +G M
Sbjct: 359 AARLAKGEEPIEFPR-ETTLGSM 380


>gi|227551194|ref|ZP_03981243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|227179662|gb|EEI60634.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
          Length = 462

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 257 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 314

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 315 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 374

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 375 AARLAKEMEPVEFPQ-ETAIGSM 396


>gi|29376203|ref|NP_815357.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis V583]
 gi|227518834|ref|ZP_03948883.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX0104]
 gi|229545741|ref|ZP_04434466.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX1322]
 gi|229549930|ref|ZP_04438655.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis ATCC
           29200]
 gi|255972713|ref|ZP_05423299.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T1]
 gi|255975765|ref|ZP_05426351.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T2]
 gi|256619144|ref|ZP_05475990.1| glucose inhibited division protein A [Enterococcus faecalis ATCC
           4200]
 gi|256762580|ref|ZP_05503160.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T3]
 gi|256853206|ref|ZP_05558576.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis T8]
 gi|256959060|ref|ZP_05563231.1| glucose inhibited division protein A [Enterococcus faecalis DS5]
 gi|256961847|ref|ZP_05566018.1| gid protein [Enterococcus faecalis Merz96]
 gi|256965044|ref|ZP_05569215.1| gid protein [Enterococcus faecalis HIP11704]
 gi|257079091|ref|ZP_05573452.1| gid protein [Enterococcus faecalis JH1]
 gi|257085102|ref|ZP_05579463.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis Fly1]
 gi|257086663|ref|ZP_05581024.1| gid protein [Enterococcus faecalis D6]
 gi|257089965|ref|ZP_05584326.1| tRNA (uracil-5-)-methyltransferase gid [Enterococcus faecalis
           CH188]
 gi|257416174|ref|ZP_05593168.1| glucose inhibited division protein A [Enterococcus faecalis
           AR01/DG]
 gi|257419376|ref|ZP_05596370.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|257422530|ref|ZP_05599520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|293382912|ref|ZP_06628830.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis R712]
 gi|293389599|ref|ZP_06634056.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis S613]
 gi|294781638|ref|ZP_06746974.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis PC1.1]
 gi|300860563|ref|ZP_07106650.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307270937|ref|ZP_07552220.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4248]
 gi|307273142|ref|ZP_07554388.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0855]
 gi|307274877|ref|ZP_07556040.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2134]
 gi|307277984|ref|ZP_07559068.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0860]
 gi|307289188|ref|ZP_07569144.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0109]
 gi|307291915|ref|ZP_07571784.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0411]
 gi|312899496|ref|ZP_07758826.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0470]
 gi|312903389|ref|ZP_07762569.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0635]
 gi|312907618|ref|ZP_07766609.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 512]
 gi|312910235|ref|ZP_07769082.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 516]
 gi|312951579|ref|ZP_07770475.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0102]
 gi|33301126|sp|Q834K1|TRMFO_ENTFA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|29343666|gb|AAO81427.1| glucose-inhibited division protein [Enterococcus faecalis V583]
 gi|227073747|gb|EEI11710.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX0104]
 gi|229304943|gb|EEN70939.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis ATCC
           29200]
 gi|229309191|gb|EEN75178.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX1322]
 gi|255963731|gb|EET96207.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T1]
 gi|255968637|gb|EET99259.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T2]
 gi|256598671|gb|EEU17847.1| glucose inhibited division protein A [Enterococcus faecalis ATCC
           4200]
 gi|256683831|gb|EEU23526.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T3]
 gi|256711665|gb|EEU26703.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis T8]
 gi|256949556|gb|EEU66188.1| glucose inhibited division protein A [Enterococcus faecalis DS5]
 gi|256952343|gb|EEU68975.1| gid protein [Enterococcus faecalis Merz96]
 gi|256955540|gb|EEU72172.1| gid protein [Enterococcus faecalis HIP11704]
 gi|256987121|gb|EEU74423.1| gid protein [Enterococcus faecalis JH1]
 gi|256993132|gb|EEU80434.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis Fly1]
 gi|256994693|gb|EEU81995.1| gid protein [Enterococcus faecalis D6]
 gi|256998777|gb|EEU85297.1| tRNA (uracil-5-)-methyltransferase gid [Enterococcus faecalis
           CH188]
 gi|257158002|gb|EEU87962.1| glucose inhibited division protein A [Enterococcus faecalis
           ARO1/DG]
 gi|257161204|gb|EEU91164.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|257164354|gb|EEU94314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|291079577|gb|EFE16941.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis R712]
 gi|291081216|gb|EFE18179.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis S613]
 gi|294451334|gb|EFG19800.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis PC1.1]
 gi|300849602|gb|EFK77352.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306496913|gb|EFM66461.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0411]
 gi|306499897|gb|EFM69258.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0109]
 gi|306505381|gb|EFM74567.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0860]
 gi|306508325|gb|EFM77432.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2134]
 gi|306510127|gb|EFM79151.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0855]
 gi|306512435|gb|EFM81084.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4248]
 gi|310626646|gb|EFQ09929.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 512]
 gi|310630545|gb|EFQ13828.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0102]
 gi|310633265|gb|EFQ16548.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0635]
 gi|311289508|gb|EFQ68064.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 516]
 gi|311293366|gb|EFQ71922.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0470]
 gi|315027185|gb|EFT39117.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2137]
 gi|315029302|gb|EFT41234.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4000]
 gi|315034052|gb|EFT45984.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0017]
 gi|315147345|gb|EFT91361.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4244]
 gi|315150455|gb|EFT94471.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0012]
 gi|315152399|gb|EFT96415.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0031]
 gi|315155671|gb|EFT99687.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0043]
 gi|315158158|gb|EFU02175.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0312]
 gi|315164097|gb|EFU08114.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1302]
 gi|315168953|gb|EFU12970.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1341]
 gi|315169813|gb|EFU13830.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1342]
 gi|315575783|gb|EFU87974.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0309B]
 gi|315577625|gb|EFU89816.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0630]
 gi|315580435|gb|EFU92626.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0309A]
 gi|329571615|gb|EGG53296.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecalis TX1467]
          Length = 435

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +   + I F R ++ +G M
Sbjct: 359 AARLAKGEEPIEFPR-ETTLGSM 380


>gi|258590887|emb|CBE67182.1| conserved hypothetical protein; putative glucose-inhibited division
           protein (gid) [NC10 bacterium 'Dutch sediment']
          Length = 443

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 176/425 (41%), Gaps = 94/425 (22%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG--- 54
           +++V+GGG AG EAA  AA+ GA   L           H+T  +  + C+ ++       
Sbjct: 3   EIVVVGGGLAGSEAAWQAAERGAHVRLYEMRPAYPTPAHRTDRLAELVCSNSLKSDSPDD 62

Query: 55  -KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L RE+ A   ++   A A  +          PA  G     DR+ +   +   +  
Sbjct: 63  CHGLLKRELTAYGSVIMTAARAHAV----------PA--GSALAVDRDAFAAEVTARLAH 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +++ EV     E+ +I             +T  LT+   L G +    +  PA  
Sbjct: 111 HPRITIVRDEVKAIPEERPVI------------IATGPLTS-ERLAGALRDRFVNYPA-- 155

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              S  +S+    + + +D           + G TI  D+T   FA  R        DK 
Sbjct: 156 ---SVDSSVDTQDLLYFYD------AISPIIAGDTI--DRT-VTFAASRY-------DKG 196

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG-PRY---CPSIE------DKIV 283
            +  + C +TR   E +R+  ++I+ + +    I S+   RY   C  IE      +  +
Sbjct: 197 GDDYLNCPMTR---EEYRLFWQSIRTAEL--APIHSFEEARYFEGCLPIEVLAARGEDAL 251

Query: 284 RFGE---------RNGH------QIFLEP-EGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           RFG          R G       Q+ LE  EG   ++V   G  T L    QH+ +RTIP
Sbjct: 252 RFGPMKPVGLIDPRTGRRPCAVVQLRLENREGTMYNIV---GFQTRLKWGEQHRILRTIP 308

Query: 328 GLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           GL     +R G      +IN P  L  T++ K   G+ LAGQ+ G  GY E+A  GL+AG
Sbjct: 309 GLGGAEFLRYGSIHRNTFINAPTLLRETMQLKGDPGILLAGQLTGVEGYLESAGSGLLAG 368

Query: 387 INSAR 391
           IN+ +
Sbjct: 369 INAVK 373


>gi|52080215|ref|YP_079006.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus licheniformis ATCC
           14580]
 gi|52785592|ref|YP_091421.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus licheniformis ATCC
           14580]
 gi|319646006|ref|ZP_08000236.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Bacillus sp. BT1B_CT2]
 gi|81170594|sp|Q65JN6|TRMFO_BACLD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|52003426|gb|AAU23368.1| glucose-inhibited division protein [Bacillus licheniformis ATCC
           14580]
 gi|52348094|gb|AAU40728.1| Gid [Bacillus licheniformis ATCC 14580]
 gi|317391756|gb|EFV72553.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Bacillus sp. BT1B_CT2]
          Length = 434

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IPGLE+  I+R G      +IN P  L  T + KK   LF AG
Sbjct: 278 GFQTHLKWGDQKEVLRLIPGLEQAEIVRYGVMHRNTFINSPSLLKATYQFKKRDDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR     + + FS  ++ IG M   +T
Sbjct: 338 QMTGVEGYVESAASGLVAGINAARLIQGKEPVTFS-NETAIGSMAHYIT 385


>gi|315037060|gb|EFT48992.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0027]
          Length = 338

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++KK   LF AG
Sbjct: 181 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSKKRDDLFFAG 240

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR +   + I F R ++ +G M
Sbjct: 241 QMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPR-ETTLGSM 283


>gi|258616487|ref|ZP_05714257.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecium DO]
 gi|314938035|ref|ZP_07845345.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a04]
 gi|314941979|ref|ZP_07848840.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133C]
 gi|314948768|ref|ZP_07852140.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0082]
 gi|314951786|ref|ZP_07854825.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133A]
 gi|314991807|ref|ZP_07857265.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133B]
 gi|314995848|ref|ZP_07860935.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a01]
 gi|313589952|gb|EFR68797.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a01]
 gi|313593618|gb|EFR72463.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133B]
 gi|313596065|gb|EFR74910.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133A]
 gi|313599231|gb|EFR78076.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133C]
 gi|313642610|gb|EFS07190.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a04]
 gi|313644834|gb|EFS09414.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0082]
          Length = 458

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 257 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 314

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 315 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 374

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 375 AARLAKEMEPVEFPQ-ETAIGSM 396


>gi|296330828|ref|ZP_06873303.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674346|ref|YP_003866018.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151833|gb|EFG92707.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412590|gb|ADM37709.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 435

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN P  L PT + K  S LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLGEELVTFPQ-ETAIGSMAHYITT 387


>gi|293377183|ref|ZP_06623391.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium PC4.1]
 gi|292644203|gb|EFF62305.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium PC4.1]
          Length = 445

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 298 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 358 AARLAKEMEPVEFPQ-ETAIGSM 379


>gi|257887689|ref|ZP_05667342.1| glucose inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257896183|ref|ZP_05675836.1| glucose inhibited division protein A [Enterococcus faecium Com12]
 gi|257823743|gb|EEV50675.1| glucose inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257832748|gb|EEV59169.1| glucose inhibited division protein A [Enterococcus faecium Com12]
          Length = 443

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 275 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 335 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 377


>gi|253700155|ref|YP_003021344.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter sp. M21]
 gi|259547954|sp|C6E557|TRMFO_GEOSM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|251775005|gb|ACT17586.1| gid protein [Geobacter sp. M21]
          Length = 435

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 168/427 (39%), Gaps = 59/427 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
            + VIGGG AGCEAA  AAK G    L   K +        P +  L   + +R  D+L+
Sbjct: 4   QITVIGGGLAGCEAAWQAAKRGVKVRLFEMKPNCYSEAHHLPGLSELVCSNSLRG-DSLE 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVIQGE 123
             +G + +    +   L ++   A + P   A   DR+L+   +   I S   ++V++ E
Sbjct: 63  NAVGLLKEELR-RLESLFMEGAEATKVPAGGALAVDRDLFSQYITSRIESHPLIEVVREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRMGDSPSNS 181
           V     E                   VVL +G    G++   IG+L              
Sbjct: 122 VTRIPEE-----------------GIVVLASGPLTAGLLAQEIGRLA------------- 151

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S++ F +D         +   GK     +  K   D+      ++   +   Q +  
Sbjct: 152 --GSYLYF-YDAIAPIVAADSIDYGKAFRASRYGKGDGDD------YVNCPMDEEQYQA- 201

Query: 242 ITRTNLETHRIIMENIKHSAIYSG-----DIKSYGP---RYCPSIEDKIV--RFGERNGH 291
             R  L   ++  ++ +    + G     ++ S GP   R+ P     +V  R G     
Sbjct: 202 FVREILAAEKVEPKSFEKVVHFEGCMPIEEMASRGPETLRFGPMKPVGLVDPRVGVEPHA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            I L  E L   +    G  T L    Q +  R IPGLE    +R G      +IN P+ 
Sbjct: 262 VIQLRQENLEATMYNLVGFQTKLTWPEQKRIFRMIPGLENAQFLRLGSMHRNTFINAPEL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  T + K    +F AGQI G  GY E+A+ G   G+N+AR S K + +     ++ IG 
Sbjct: 322 LMATCQLKSDQRIFFAGQITGVEGYVESASSGFAVGVNAARLS-KGEGLVVPPAETAIGA 380

Query: 411 MIDDLTS 417
           +   +T+
Sbjct: 381 LARHITN 387


>gi|311030139|ref|ZP_07708229.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus sp. m3-13]
          Length = 434

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFINSPNLLKPTYQFKEREDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AG+N+AR     + + F + ++ IG M   +TS
Sbjct: 339 QMTGVEGYVESAASGLIAGMNAARLVLGEEPLVFPK-ETAIGSMAHYITS 387


>gi|94987290|ref|YP_595223.1| tRNA (uracil-5-)-methyltransferase Gid [Lawsonia intracellularis
           PHE/MN1-00]
 gi|205830361|sp|Q1MQ25|TRMFO_LAWIP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94731539|emb|CAJ54902.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 445

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 157/412 (38%), Gaps = 80/412 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG---- 52
           +++ +IGGG +GCE A   AK G S  L           H T  +  + C+ ++      
Sbjct: 4   HNIAIIGGGLSGCECALTLAKFGFSVTLFEQKPQLFSPAHNTPLLAELVCSNSLRSNELT 63

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
            G G L +E+  L+  +  +AD   +          PA  G     DREL+   + + I 
Sbjct: 64  TGIGLLKQELRELNSPLMAIADTCRV----------PA--GKALAVDRELFSKQVTQLIE 111

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           S   + +I+ EV+  +T     S +   D                 R ++  G L  P  
Sbjct: 112 SHPKIHLIREEVSSLST-----SFLEKYD-----------------RIIVATGPLASP-- 147

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-DKTEKQFADERL-IPFSFMT 230
            + +S S  + + ++ F      + T     +D     W  + E+Q   + L  P S+  
Sbjct: 148 NISNSLSTLIGDKYLYFYDAIAPIVTAD--SIDMSIAFWGSRYEEQGEGDYLNCPMSYEE 205

Query: 231 -----------DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCP 276
                      +K+TN ++E  I          + E  + + ++ G  K  G   P    
Sbjct: 206 YQIFYSSLLKGEKVTNSKVEKEIHFEGCMPIEALAERGEKTLLF-GPFKPVGLINPHT-- 262

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
                    G R    + L PE LN  ++   G  T L    Q    R +PGL  V  +R
Sbjct: 263 ---------GLRPYAVLQLRPENLNKSMLNLVGCQTKLTYPAQDTIFRLVPGLSNVEFVR 313

Query: 337 PGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
            G      YIN PK L   L  +    + LAGQI G  GY E+ A GL   I
Sbjct: 314 FGSMHRNTYINSPKILTDQLALRNFPCIHLAGQITGVEGYVESIACGLWVSI 365


>gi|257884854|ref|ZP_05664507.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,501]
 gi|257820692|gb|EEV47840.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,501]
          Length = 439

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 238 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 295

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 296 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 355

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 356 AARLAKEMEPVEFPQ-ETAIGSM 377


>gi|69246760|ref|ZP_00604108.1| Gid protein [Enterococcus faecium DO]
 gi|257878023|ref|ZP_05657676.1| glucose inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257881191|ref|ZP_05660844.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|257889778|ref|ZP_05669431.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|260559073|ref|ZP_05831259.1| gid protein [Enterococcus faecium C68]
 gi|68195114|gb|EAN09574.1| Gid protein [Enterococcus faecium DO]
 gi|257812251|gb|EEV41009.1| glucose inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257816849|gb|EEV44177.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|257826138|gb|EEV52764.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|260074830|gb|EEW63146.1| gid protein [Enterococcus faecium C68]
          Length = 439

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 275 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 335 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 377


>gi|294617497|ref|ZP_06697128.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1679]
 gi|291596237|gb|EFF27499.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1679]
          Length = 441

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 298 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 358 AARLAKEMEPVEFPQ-ETAIGSM 379


>gi|261207607|ref|ZP_05922292.1| gid protein [Enterococcus faecium TC 6]
 gi|289565119|ref|ZP_06445572.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecium D344SRF]
 gi|260077990|gb|EEW65696.1| gid protein [Enterococcus faecium TC 6]
 gi|289163126|gb|EFD10973.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecium D344SRF]
          Length = 439

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 238 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 295

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 296 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 355

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 356 AARLAKEMEPVEFPQ-ETAIGSM 377


>gi|300767453|ref|ZP_07077365.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495272|gb|EFK30428.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 450

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T
Sbjct: 349 QMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYIT 396


>gi|321315379|ref|YP_004207666.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis BSn5]
 gi|320021653|gb|ADV96639.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis BSn5]
          Length = 435

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN P  L PT + K  S LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLGEELVIFPQ-ETAIGSMAHYITT 387


>gi|293556767|ref|ZP_06675330.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1039]
 gi|291601099|gb|EFF31388.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1039]
          Length = 441

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 337 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 379


>gi|293563425|ref|ZP_06677874.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1162]
 gi|293568162|ref|ZP_06679498.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1071]
 gi|294622306|ref|ZP_06701349.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium U0317]
 gi|291589152|gb|EFF20964.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1071]
 gi|291598198|gb|EFF29296.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium U0317]
 gi|291604686|gb|EFF34171.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1162]
          Length = 441

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 298 ENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR + +++ + F + ++ IG M
Sbjct: 358 AARLAKEMEPVEFPQ-ETAIGSM 379


>gi|257898820|ref|ZP_05678473.1| glucose inhibited division protein A [Enterococcus faecium Com15]
 gi|257836732|gb|EEV61806.1| glucose inhibited division protein A [Enterococcus faecium Com15]
          Length = 439

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 275 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 335 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 377


>gi|312876488|ref|ZP_07736471.1| gid protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796699|gb|EFR13045.1| gid protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 436

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 169/445 (37%), Gaps = 95/445 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +++VIG G AG EAA   AK G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANAIAKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A  ++             G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEATSVE------------AGQALAVDRYKFSEYITQKIRQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              ++VI  EV    TE       V +D  ++ C T  LTT   L  +           +
Sbjct: 110 NGLIEVIHEEV----TE-------VPRDKVVVVC-TGPLTTQKLLSDI----------SK 147

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +S +   F++               P  L           K   D     F+   +K 
Sbjct: 148 LCESKNLYFFDA-------------AAPIVL-----------KDSIDFSKAFFASRYNKG 183

Query: 234 TNRQIECGITRTNLE--------THRIIMENIKHSAIYSG------------DIKSYGPR 273
           +N  I C +T+   E           I +++ +   ++ G            D   +GP 
Sbjct: 184 SNDYINCPMTKEEYEKFYWELVNAEVIEVKDFEKDLLFEGCIPIEEMARRGIDTMRFGPL 243

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               I D   R G+     + L  +  +  +    G  T L    Q +  R IPGLE   
Sbjct: 244 KPVGIIDP--RTGKMPYAVVQLRKDTQDGKLYNIVGFQTRLKWGEQKRVFRLIPGLENAE 301

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +R G   +  YIN P+ L   L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+
Sbjct: 302 FVRFGVMHKNSYINSPEVLTKYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQ 361

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTS 417
               + +    + + IG +I+ +T+
Sbjct: 362 VLGKEPVSLP-SSTCIGALIEYITT 385


>gi|257892285|ref|ZP_05671938.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|257828664|gb|EEV55271.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,408]
          Length = 439

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 275 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 335 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 377


>gi|293570277|ref|ZP_06681346.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E980]
 gi|291609684|gb|EFF38945.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E980]
          Length = 441

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 337 QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 379


>gi|16078676|ref|NP_389495.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309488|ref|ZP_03591335.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313813|ref|ZP_03595618.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318737|ref|ZP_03600031.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323008|ref|ZP_03604302.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183519|sp|P39815|TRMFO_BACSU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|2462971|emb|CAA04423.1| Gid protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633985|emb|CAB13486.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291484164|dbj|BAI85239.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           natto BEST195]
          Length = 435

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN P  L PT + K  S LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M   +T+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAKLVLGEELVIFPQ-ETAIGSMAHYITT 387


>gi|295692918|ref|YP_003601528.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Lactobacillus crispatus ST1]
 gi|295031024|emb|CBL50503.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus crispatus ST1]
          Length = 438

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P+ L  + E K+  GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPEVLTASYEAKEQPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   D + F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREAMGKDTVAFPK-DTALGSMTNYITT 387


>gi|308180664|ref|YP_003924792.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046155|gb|ADN98698.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 441

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   LF AG
Sbjct: 280 GFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T
Sbjct: 340 QMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYIT 387


>gi|254556721|ref|YP_003063138.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           JDM1]
 gi|254045648|gb|ACT62441.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           JDM1]
          Length = 441

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   LF AG
Sbjct: 280 GFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T
Sbjct: 340 QMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYIT 387


>gi|195151125|ref|XP_002016498.1| GL10455 [Drosophila persimilis]
 gi|194110345|gb|EDW32388.1| GL10455 [Drosophila persimilis]
          Length = 154

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 77/123 (62%), Gaps = 6/123 (4%)

Query: 502 RTAYEFLSYP--DFSIQNLFSICPDARKF---SSLVIERLQIESSYAAYTGRQMIEAKEI 556
           +TA++ L+ P  + ++  L ++ P    +    + + ERL+IE+ Y+ +   Q  + +++
Sbjct: 29  KTAFDMLAIPADNITVDKLINLFPTELSWLRDDNNLAERLKIEALYSFFVEEQQRDVEDV 88

Query: 557 KFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + EE+  IP D DY S + +LSNE ++KLS+++P  +  AS+I+G+TP+ +  ++ Y+KK
Sbjct: 89  RREERLAIPADIDYFSKVLSLSNEERQKLSLIQPQTIAAASRIQGVTPSTIVRIMKYVKK 148

Query: 616 NTV 618
             V
Sbjct: 149 ADV 151


>gi|3130085|dbj|BAA26108.1| unnamed protein product [Streptococcus mutans]
          Length = 217

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AG
Sbjct: 61  GFQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAG 120

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +
Sbjct: 121 QMTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGAL 163


>gi|28378507|ref|NP_785399.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           WCFS1]
 gi|33516858|sp|Q88W23|TRMFO_LACPL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|28271343|emb|CAD64248.1| glucose inhibited division protein GidC [Lactobacillus plantarum
           WCFS1]
          Length = 441

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   LF AG
Sbjct: 280 GFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T
Sbjct: 340 QMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYIT 387


>gi|310641537|ref|YP_003946295.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Paenibacillus polymyxa SC2]
 gi|309246487|gb|ADO56054.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Paenibacillus polymyxa SC2]
          Length = 446

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+   +R G      +IN P++L PT + K  S LF AG
Sbjct: 281 GFQTHLKWGEQKRVFSMIPGLEEAEFVRYGVMHRNTFINSPQQLHPTYQFKGRSNLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AGIN+AR +   +   F   ++ +G M   +T+
Sbjct: 341 QMTGVEGYVESAASGLLAGINAARAARGQEMFVFP-AETTLGSMARYITT 389


>gi|227879130|ref|ZP_03997014.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843163|ref|ZP_05548651.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|256850238|ref|ZP_05555667.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus crispatus
           MV-1A-US]
 gi|262046370|ref|ZP_06019332.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus MV-3A-US]
 gi|293380239|ref|ZP_06626320.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus 214-1]
 gi|312977298|ref|ZP_07789046.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus CTV-05]
 gi|227861287|gb|EEJ68922.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614583|gb|EEU19784.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|256712875|gb|EEU27867.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus crispatus
           MV-1A-US]
 gi|260573241|gb|EEX29799.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus MV-3A-US]
 gi|290923206|gb|EFE00128.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus 214-1]
 gi|310895729|gb|EFQ44795.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus CTV-05]
          Length = 438

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P+ L  + E K+  GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPEVLTASYEAKEQPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   D + F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREAMGKDTVAFPK-DTALGSMANYITT 387


>gi|3130071|dbj|BAA26100.1| unnamed protein product [Streptococcus mutans]
 gi|3130078|dbj|BAA26104.1| unnamed protein product [Streptococcus mutans]
 gi|3130092|dbj|BAA26112.1| unnamed protein product [Streptococcus mutans]
 gi|3130102|dbj|BAA26118.1| unnamed protein product [Streptococcus mutans]
          Length = 217

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AG
Sbjct: 61  GFQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAG 120

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +
Sbjct: 121 QMTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGAL 163


>gi|123968755|ref|YP_001009613.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. AS9601]
 gi|205830321|sp|A2BRU5|TRMFO_PROMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123198865|gb|ABM70506.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. AS9601]
          Length = 470

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 179/453 (39%), Gaps = 98/453 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           VI+IG G AG EAA   A  G    L+          H TS  G + C+ + G L     
Sbjct: 6   VIIIGAGLAGSEAAWQVASSGVPVKLVEMRPIKSTPAHHTSEFGELVCSNSFGALSPDRA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E+   + L+ + AD   +          PA  G     DR  + +A+   + + 
Sbjct: 66  AGLLQKELRIFNSLIVQTADKFAV----------PA--GGALAVDRSKFSIALTEALSNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK----IP 170
             +++ + E     +++NI                 +L TG      +   K++    I 
Sbjct: 114 PLIEIKRFEQLDLPSKENI----------------TILATGPLTADELSY-KIQAFTGID 156

Query: 171 AGRMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLD-----------------GKTIIW 211
           A    D+ S  ++   +  +  F   R   G PA  +                 G+ +  
Sbjct: 157 ACHFFDAASPIIYGDTIDQEIVFKASRYDKGDPAYFNCPMGKNDYINFRNELIKGEQVNL 216

Query: 212 DKTEKQFAD--ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
              EK+ A+  E  +P                I R  ++T R             G +KS
Sbjct: 217 KDFEKESANFFEACLPIE-------------EIARRGVDTMRY------------GPLKS 251

Query: 270 YG---PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
            G   P++   + D+  R  +R    + L  E L   ++   G  T L    Q +  R I
Sbjct: 252 IGLWNPKWG-DLFDRENRLKKRPHAVVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRLI 310

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLEK   +R G      ++ +PK L PTL+  K   LF AGQI GT GY  AAA GL+A
Sbjct: 311 PGLEKAEFVRFGVMHRNTFLESPKLLLPTLQFLKRENLFAAGQITGTEGYAAAAAGGLLA 370

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           GIN++  +     + F    S IG +++ +++K
Sbjct: 371 GINASLLAKGKKTVSFP-DQSMIGSLMNFISNK 402


>gi|329929263|ref|ZP_08283016.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. HGF5]
 gi|328936632|gb|EGG33075.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. HGF5]
          Length = 444

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE   I+R G      ++N PK L  T + K    L+LAG
Sbjct: 283 GFQTHLKWGEQKRIISMIPGLENAEIVRYGVMHRNTFVNSPKLLEQTYQVKTRPNLYLAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR +   + I F + +S IG M
Sbjct: 343 QMTGVEGYVESAASGLIAGINAARAAQGREGIVFPQ-ESTIGSM 385


>gi|24379443|ref|NP_721398.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus mutans UA159]
 gi|26006973|sp|P05428|TRMFO_STRMU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|24377377|gb|AAN58704.1|AE014939_11 putative glucose-inhibited division protein [Streptococcus mutans
           UA159]
          Length = 444

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AG
Sbjct: 288 GFQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGAL 390


>gi|290580545|ref|YP_003484937.1| putative glucose-inhibited division protein [Streptococcus mutans
           NN2025]
 gi|254997444|dbj|BAH88045.1| putative glucose-inhibited division protein [Streptococcus mutans
           NN2025]
          Length = 444

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AG
Sbjct: 288 GFQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGAL 390


>gi|261407990|ref|YP_003244231.1| gid protein [Paenibacillus sp. Y412MC10]
 gi|261284453|gb|ACX66424.1| gid protein [Paenibacillus sp. Y412MC10]
          Length = 442

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE   I+R G      ++N PK L  T + K    L+LAG
Sbjct: 281 GFQTHLKWGEQKRIISMIPGLENAEIVRYGVMHRNTFVNSPKLLEQTYQVKTRPNLYLAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR +   + I F + +S IG M
Sbjct: 341 QMTGVEGYVESAASGLIAGINAARAAQGREGIVFPQ-ESTIGSM 383


>gi|296133057|ref|YP_003640304.1| gid protein [Thermincola sp. JR]
 gi|296031635|gb|ADG82403.1| gid protein [Thermincola potens JR]
          Length = 435

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +E+   + GER    + L  + +   +    G  T L    Q +  R IPGL
Sbjct: 242 FGPMKPVGLENP--KTGERPYAVVQLRQDDMEGTLYNIVGFQTHLKWGEQQRVFRMIPGL 299

Query: 330 EKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           EK   +R G      +IN P  L PT + +K   LF AGQI G  GY E+AA GL+AGIN
Sbjct: 300 EKAEFVRYGVMHRNTFINSPTVLEPTFQFRKRKDLFFAGQITGVEGYVESAAAGLMAGIN 359

Query: 389 SARKSNKLDCICFSRTDSY 407
           +AR     + + F    ++
Sbjct: 360 AARLVKGQEPVVFPPATAH 378


>gi|299822638|ref|ZP_07054524.1| tRNA:M(5)U-54 methyltransferase [Listeria grayi DSM 20601]
 gi|299816167|gb|EFI83405.1| tRNA:M(5)U-54 methyltransferase [Listeria grayi DSM 20601]
          Length = 440

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE   I+R G      +IN P+ L PT + K    LF AG
Sbjct: 284 GFQTHLKWGEQKRVFQMIPGLENAEIVRYGVMHRNTFINSPEILLPTYQLKAREDLFFAG 343

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL AGIN+A+  +  + I F R ++ IG M   +T
Sbjct: 344 QMTGVEGYVESAASGLAAGINAAKYVSGEEPITFPR-ETAIGSMAHYIT 391


>gi|317121808|ref|YP_004101811.1| gid protein [Thermaerobacter marianensis DSM 12885]
 gi|315591788|gb|ADU51084.1| gid protein [Thermaerobacter marianensis DSM 12885]
          Length = 508

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T+L    Q +  R IPGLE     R G      +I +PK L PT++T+K   LF AG
Sbjct: 280 GFQTSLKWGEQKRVFRMIPGLENAEFARYGVMHRNTFICSPKILHPTMQTRKRPDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           QI G  GY E+AA G+VAGIN+AR     + + F
Sbjct: 340 QITGVEGYIESAATGIVAGINAARLVRGEEPVAF 373


>gi|256851130|ref|ZP_05556519.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260660554|ref|ZP_05861469.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282932231|ref|ZP_06337675.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|297205995|ref|ZP_06923390.1| (FADH(2)-oxidizing) protein [Lactobacillus jensenii JV-V16]
 gi|256616192|gb|EEU21380.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548276|gb|EEX24251.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281303626|gb|EFA95784.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|297149121|gb|EFH29419.1| (FADH(2)-oxidizing) protein [Lactobacillus jensenii JV-V16]
          Length = 439

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  T E KK +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLNATYEAKKQAGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++R +  LD   F   ++ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASRLARGLDLATFP-VETALGSMANYITT 387


>gi|294614818|ref|ZP_06694713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Enterococcus faecium E1636]
 gi|291592280|gb|EFF23894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Enterococcus faecium E1636]
          Length = 196

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL  PT ++ K   LF AG
Sbjct: 32  GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKPTYQSTKREDLFFAG 91

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M
Sbjct: 92  QMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSM 134


>gi|260886590|ref|ZP_05897853.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839576|ref|YP_004414156.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Selenomonas sputigena ATCC 35185]
 gi|260863733|gb|EEX78233.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747340|gb|AEC00697.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Selenomonas sputigena ATCC 35185]
          Length = 437

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 163/426 (38%), Gaps = 76/426 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHL 58
           VIV+G G AG EAA  AA+ GA   L           HKT+    + C+ ++ G G  + 
Sbjct: 4   VIVVGAGLAGSEAAWQAAESGAQVTLYEMRPADSSPAHKTADFAELVCSNSLRGAGLENA 63

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V  +      +G +  AA    RV      PA  G     DRE +   +  ++ +   ++
Sbjct: 64  VGVLKEEMRRLGSLVMAAADATRV------PA--GGALAVDREGFSRFITEKLTAHPRVE 115

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS- 177
           V++  V           +I  +++++   ++  LT G     +  +         MGD+ 
Sbjct: 116 VVRMRV----------ETIPREEDAVTIVASGPLTDGALAACLREM---------MGDAS 156

Query: 178 --------PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
                   P  +L +  M   +   R   G PA ++                       M
Sbjct: 157 FYFYDAAAPIVTLESIDMTKAYRASRYGKGEPAYINCP---------------------M 195

Query: 230 TDKITNRQIECGITRTNLETHR----IIMENIKHSAIYSGDIKS---YGPRYCPSIEDKI 282
           T++      +   T    E H     +  E      + +   +S   +GP     +ED  
Sbjct: 196 TEEEYRAFWQALTTAETAELHSFEKPVFFEGCMPVEVMASRGESTLLFGPLKPVGLEDP- 254

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G R    + L  +     +    G  T L    Q +    IPGLE    +R G    
Sbjct: 255 -KTGVRPHAVVQLRQDNATGTLYNIVGFQTHLKWGEQRRVFCMIPGLENAEFMRYGVMHR 313

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             YI+ P+ L PT + KK + L  AGQ+ G  GY E+AA GLVAGIN+AR +       F
Sbjct: 314 NTYIDSPRLLAPTYQLKKEAELLFAGQMTGVEGYVESAASGLVAGINAARLAKGQRPFVF 373

Query: 402 SRTDSY 407
            R   +
Sbjct: 374 PRETCH 379


>gi|258508407|ref|YP_003171158.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus GG]
 gi|257148334|emb|CAR87307.1| Glucose inhibited division protein A [Lactobacillus rhamnosus GG]
 gi|259649722|dbj|BAI41884.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus GG]
          Length = 440

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 278 GFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AG N+AR +     I F +T           T+ G +  Y   
Sbjct: 338 QMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQT-----------TAMGAMAHYITH 386

Query: 428 TSRAEYRISLRPDNAD-NRLTPIGMKLGCIGERRQK 462
           TS + +    +P NA+   + P+ +K+    ER Q+
Sbjct: 387 TSPSHF----QPMNANFGIMPPLAVKVRNKKERNQQ 418


>gi|199599533|ref|ZP_03212921.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus rhamnosus HN001]
 gi|199589574|gb|EDY97692.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus rhamnosus HN001]
          Length = 439

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AG N+AR +     I F +T           T+ G +  Y   
Sbjct: 337 QMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQT-----------TAMGAMAHYITH 385

Query: 428 TSRAEYRISLRPDNAD-NRLTPIGMKLGCIGERRQK 462
           TS + +    +P NA+   + P+ +K+    ER Q+
Sbjct: 386 TSPSHF----QPMNANFGIMPPLAVKVRNKKERNQQ 417


>gi|205830471|sp|Q38WZ1|TRMFO_LACSS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 436

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++ +P  L PT ++K+ S LF AG
Sbjct: 280 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFMKSPDVLLPTYQSKQRSDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN++R +   + + F  T + +G M   +T
Sbjct: 340 QMTGVEGYVESAASGLVAGINASRLALDTEPVTFPATTA-MGSMAHYIT 387


>gi|288553073|ref|YP_003425008.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pseudofirmus OF4]
 gi|288544233|gb|ADC48116.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pseudofirmus OF4]
          Length = 435

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L  T + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVLKLIPGLENAEIVRYGVMHRNTFINSPNLLKSTYQYKDREDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA GL+AGIN+AR  N  + + F   ++ +G M + +T+
Sbjct: 339 QITGVEGYVESAAAGLIAGINAARLVNNEELLTFPE-ETVLGSMANYITT 387


>gi|295696105|ref|YP_003589343.1| gid protein [Bacillus tusciae DSM 2912]
 gi|295411707|gb|ADG06199.1| gid protein [Bacillus tusciae DSM 2912]
          Length = 439

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+    R G      Y+N P+ L PT +T++   LF AG
Sbjct: 277 GFQTHLRWGEQSRVFRLIPGLEEAEFARFGVMHRNTYLNSPRLLLPTYQTRRRKTLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           QI G  GY E+AA GL+AGIN+ R +   D + +
Sbjct: 337 QITGVEGYVESAASGLIAGINAGRLARGEDPLTW 370


>gi|308068646|ref|YP_003870251.1| protein gid-like protein [Paenibacillus polymyxa E681]
 gi|305857925|gb|ADM69713.1| Protein gid-like protein [Paenibacillus polymyxa E681]
          Length = 446

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE+   +R G      +IN P++L PT + K  S LF AG
Sbjct: 281 GFQTHLKWGEQKRVFSMIPGLEEAEFVRYGVMHRNTFINSPQQLHPTYQFKGRSNLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AG+N+AR +   +   F   ++ +G M   +T+
Sbjct: 341 QMTGVEGYVESAASGLLAGMNAARAARGQEMFVFP-AETTLGSMARYITT 389


>gi|254525767|ref|ZP_05137819.1| tRNA:m(5)U-54 methyltransferase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537191|gb|EEE39644.1| tRNA:m(5)U-54 methyltransferase [Prochlorococcus marinus str. MIT
           9202]
          Length = 470

 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 174/438 (39%), Gaps = 56/438 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDKK--VIVIGAGLAGSEAAWQVANAGVPVELVEMRPVKSTPAHHTGEFGELVCSNSFG 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            L      G L +E+     L+ + AD   +          PA  G     DR  + +A+
Sbjct: 59  ALNPDRAAGLLQKELRIFKSLIIQTADKFAV----------PA--GGALAVDRSKFSIAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   +++ + E      ++ I         S      +   TG   +   H    
Sbjct: 107 TEALSSHPLIEIKRFEQLDLPRKEKITILATGPLTSDELSYKIQAFTG---KDACHFFDA 163

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P    GDS    +        F   R   G PA L+      DK +      +LI   
Sbjct: 164 ASPIIS-GDSIDQEIV-------FKASRYDKGDPAYLNCPM---DKNDYMHFRNQLIEGE 212

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS---GDIKSYG---PRYCPSIEDK 281
               K   ++        N     + +E I    + +   G +KS G   P++   + D+
Sbjct: 213 QANLKDFEKE------SANFFEACLPIEEIARRGVDTMRFGPLKSIGLWNPKWG-DLFDR 265

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
             R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G   
Sbjct: 266 ENRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGVMH 325

Query: 342 EYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              ++ +P  L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +     + 
Sbjct: 326 RNTFLESPNLLLPTLQFMKRENLFAAGQITGTEGYAAAAAGGLLAGINASLLAKGKKTVS 385

Query: 401 FSRTDSYIGVMIDDLTSK 418
           F + +S IG +I+ +++K
Sbjct: 386 FPK-ESMIGSLINFISNK 402


>gi|297624866|ref|YP_003706300.1| gid protein [Truepera radiovictrix DSM 17093]
 gi|297166046|gb|ADI15757.1| gid protein [Truepera radiovictrix DSM 17093]
          Length = 442

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 191/499 (38%), Gaps = 84/499 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           + VIG G AG +AA  AAKLG   AL           H+T +   + C+ + GG G    
Sbjct: 6   LTVIGAGMAGSDAAFAAAKLGVKVALYEMRPAKMTPAHRTGSFAELVCSNSFGGEGEANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L RE+ A  GL+   A A  +          PA  G     DRE +   +   +   
Sbjct: 66  KGLLQREMLAAGGLVMTSAHATRV----------PA--GGALAVDREAFSARVTEALCEH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+        +++S  +  +++    ++  + G    G        I     
Sbjct: 114 PNITVHTEELTELPDGVVVVASGPLTSDAL--AESLRKSVGEDFLGFYDAAAPVI----- 166

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-----FM 229
            D  S  +  ++ K  +D                        Q AD   +PF+       
Sbjct: 167 -DIDSIDMGIAYRKGRYD------------------------QAADYLNLPFTKEQYDAW 201

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            D +T  +         LE     M  I+  A    D   +GP     +E      GER 
Sbjct: 202 YDALTRARQHTPHDWEKLEFFEGCMP-IEELARRGPDTPRFGPLKPVGLEHP--ETGERP 258

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
                L  E     +    G  T L    Q + +R IPGL+   ++R G      Y+N P
Sbjct: 259 YAVAQLRQEDARGQMWSLVGFQTGLKWGDQKEVVRLIPGLQNAEVVRYGVMHRNTYLNAP 318

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L P L  +    LF+AG + GT GY E++A G +AG N+AR+   L  +    T S +
Sbjct: 319 RLLTPHLNLRAHPRLFVAGVLAGTEGYLESSATGWLAGTNAARQLLGLAPVLPPET-SML 377

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG--ERRQKRFAK 466
           G ++  L S                  + +P NA+  L P   K+   G  ERR + F +
Sbjct: 378 GGLVRYLASANP--------------DNFQPMNANWSLVPALPKVRGEGKKERRARAFRR 423

Query: 467 YIQEY-NFLRSLLKSLVLT 484
            ++ +  +L+ +    VL+
Sbjct: 424 GLEAFEGWLQEVTTPPVLS 442


>gi|314933430|ref|ZP_07840795.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus caprae C87]
 gi|313653580|gb|EFS17337.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus caprae C87]
          Length = 435

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 177/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G +  LI          H T     + C+ ++ G      
Sbjct: 5   VNVIGAGLAGSEAAYQLAQRGLNVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV----------PA--GGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  EV        II+             T  LTT    + ++ I GK ++    
Sbjct: 113 PNVTVLNKEVNHIPEGYTIIA-------------TGPLTTEHLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  +  +   ++K  +D G                   A L+ +    ++ EK+
Sbjct: 160 AAAPIVEKDTIDMNKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + GER    + L  +     +    G  T L    Q + IR IPGLE V+I+R 
Sbjct: 249 LEDP--KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E +    L+ AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELEGHEHLYFAGQMTGVEGYVESAASGLVAGINLAHKLAGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVIFPR-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLP 404


>gi|227893506|ref|ZP_04011311.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus ultunensis
           DSM 16047]
 gi|227864676|gb|EEJ72097.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus ultunensis
           DSM 16047]
          Length = 438

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 18/157 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E KK  GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDILTASYEAKKQPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M + +T           
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREAMGEETVAFPK-DTALGSMANYVT----------- 386

Query: 428 TSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQK 462
           T+ A++    +P NA   L P   G K+    ER +K
Sbjct: 387 TTSAKH---FQPMNASFALLPALEGKKIRKKRERHEK 420


>gi|520754|gb|AAA22764.1| putative [Bacillus subtilis]
          Length = 363

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN P  L PT + K  S LF AG
Sbjct: 279 GFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKPTYQFKNRSDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+A+
Sbjct: 339 QMTGVEGYVESAASGLVAGINAAK 362


>gi|223044221|ref|ZP_03614258.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus capitis SK14]
 gi|222442371|gb|EEE48479.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus capitis SK14]
          Length = 435

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 176/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGVKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV----------PA--GGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  EV        II+             T  LTT    + ++ I GK ++    
Sbjct: 113 PNITVLNEEVNHIPEGYTIIA-------------TGPLTTEHLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  +  +   ++K  +D G                   A L+ +    ++ EK+
Sbjct: 160 AAAPIVEKDTIDMNKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + GER    + L  +     +    G  T L    Q + IR IPGLE V+I+R 
Sbjct: 249 LEDP--KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E +    L+ AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELEGHDHLYFAGQMTGVEGYVESAASGLVAGINLAHKLAGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVIFPR-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLP 404


>gi|188586008|ref|YP_001917553.1| gid protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205830312|sp|B2A334|TRMFO_NATTJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|179350695|gb|ACB84965.1| gid protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 433

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      +IN PK L    + ++  GLF AG
Sbjct: 277 GFQTRLKWPEQRRVFRKIPGLEEAEFVRYGVMHRNTFINSPKVLTANYQLRERPGLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+ A GLVAG+N+ARK    + + F R            T+ G L      
Sbjct: 337 QVTGVEGYVESTASGLVAGLNAARKLQGNETLTFPRE-----------TALGAL------ 379

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCI 456
              A Y +   PDN      P+ +  G +
Sbjct: 380 ---ASYIVEASPDN----FQPMNINFGLL 401



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 26/151 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIGGG AG EAA  AA+ G +  L           HKT  +  + C+ ++        
Sbjct: 3   LTVIGGGLAGSEAAYQAAQQGVTVDLYEMRPVKTTAAHKTGELAELVCSNSLRAKSLENA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+   D L+ +VAD   +          PA  G     DRE +   +   I + 
Sbjct: 63  AGLLKEELRKFDSLIMKVADQVQV----------PA--GGALAVDREAFSQKVTEYIENH 110

Query: 115 ENLDVIQGEVAGFN-TEKNIISSIVMQDNSM 144
            N+++I  EV   N ++  +I++  +   S+
Sbjct: 111 PNINLITEEVTEINESQPTVIATGPLTSTSL 141


>gi|157413587|ref|YP_001484453.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9215]
 gi|205830317|sp|A8G5I6|TRMFO_PROM2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157388162|gb|ABV50867.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Prochlorococcus marinus str. MIT 9215]
          Length = 470

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 180/444 (40%), Gaps = 68/444 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDKK--VIVIGAGLAGSEAAWQVANAGVPVKLVEMRPFKSTPAHHTGEFGELVCSNSFG 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            L      G L +E+     L+ + AD   +          PA  G     DR  + +A+
Sbjct: 59  ALNPDRAAGLLQKELRIFKSLIIQTADKFAV----------PA--GGALAVDRSKFSMAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   +++ + E      ++ I                 +L TG      +   K+
Sbjct: 107 TEALSSHPLIEIERFEQLDLPRKEKI----------------TILATGPLTSDELSY-KI 149

Query: 168 K----IPAGRMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +    I A    D+ S  ++   +  +  F   R   G PA L+      DK        
Sbjct: 150 QAFTGIDACHFFDAASPIIYGDSIDQEIVFKASRYDKGDPAYLNCPM---DKNNYIHFRN 206

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS---GDIKSYG---PRYC 275
           +LI       K   ++        N     + +E I    + +   G +KS G   P++ 
Sbjct: 207 QLIEGEQANLKDFEKE------SANFFEACLPIEEIARRGVDTMRFGPLKSIGLWNPKWG 260

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
             + D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +
Sbjct: 261 -DLFDRENRLKKRPYAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFV 319

Query: 336 RPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      ++ +P  L PTL+  K + LF AGQI GT GY  AAA GL+AGIN++  + 
Sbjct: 320 RFGVMHRNTFLESPNLLLPTLQFMKRNNLFAAGQITGTEGYAAAAAGGLLAGINASLLAK 379

Query: 395 KLDCICFSRTDSYIGVMIDDLTSK 418
               + F + +S IG +I+ +++K
Sbjct: 380 GKKTVSFPK-ESMIGSLINFISNK 402


>gi|332686607|ref|YP_004456381.1| tRNA m(5)U-54 MTase gid [Melissococcus plutonius ATCC 35311]
 gi|332370616|dbj|BAK21572.1| tRNA m(5)U-54 MTase gid [Melissococcus plutonius ATCC 35311]
          Length = 436

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  + IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPFAVIQLRQDNAAASLYNMVGFQTHLKWGEQKRVFQMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    IR G      +IN  EL  PT +++K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFIRYGVMHRNSFINSPELLKPTYQSQKRDNLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +     + F R ++ +G M
Sbjct: 359 AARLTKNNVPLIFPR-ETVLGSM 380


>gi|298571315|gb|ADI87659.1| tRNA (uracil-5-)-methyltransferase Gid [uncultured Nitrospirae
           bacterium MY2-1F]
 gi|298571416|gb|ADI87757.1| tRNA (uracil-5-)-methyltransferase Gid [uncultured Nitrospirae
           bacterium MY3-11A]
          Length = 410

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R +PGLEK   +R G      YI+ P+ L   L  K +  +F+AG
Sbjct: 251 GCQTRLKYTEQSHVFRLVPGLEKAEFLRYGSIHRNTYIDSPRHLNKNLTLKSMPNIFIAG 310

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+ A GL+AGI +ARK   LD +  SR  +  G +I+ +T  G  +P    
Sbjct: 311 QITGVEGYLESTAMGLLAGIYTARKLRGLDEVLPSRYTA-CGSLIEHIT--GAAQPS--- 364

Query: 428 TSRAEYRISLRPDNAD-NRLTPIGMKLGCIGERRQKRFAKYIQEY 471
                   + +P N +   L P+ + +    ++RQ   A+ + ++
Sbjct: 365 --------TFQPSNINFGLLPPLSVPIRDKAKKRQAVVARALADW 401


>gi|315648143|ref|ZP_07901244.1| gid protein [Paenibacillus vortex V453]
 gi|315276789|gb|EFU40132.1| gid protein [Paenibacillus vortex V453]
          Length = 442

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE   I+R G      ++N PK L  T + K    L+LAG
Sbjct: 281 GFQTHLKWGEQKRVLSMIPGLENAEIVRYGVMHRNTFVNSPKLLEQTYQVKTRPNLYLAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL+AGIN+AR +   + + F + +S IG M
Sbjct: 341 QMTGVEGYVESAASGLIAGINAARAAQGQEGVVFPQ-ESAIGSM 383


>gi|324992898|gb|EGC24818.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK405]
 gi|327460351|gb|EGF06688.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1057]
          Length = 444

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 162/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKTS    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQMVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG     V+     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDVL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|238855697|ref|ZP_04645994.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 269-3]
 gi|260664452|ref|ZP_05865304.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932211|ref|ZP_06337658.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|238831682|gb|EEQ24022.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 269-3]
 gi|260561517|gb|EEX27489.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303661|gb|EFA95816.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
          Length = 439

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  T E KK +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLNATYEAKKQAGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++R +   D + F   ++ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASRLAQGKDLVTFP-VETALGSMANYITT 387



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIGGG AG EA+   AK G    L           H+T  +  + C  ++        
Sbjct: 5   VTVIGGGLAGSEASYQLAKRGVEVHLYEMRPVKMTPAHETGNLAELVCTNSMRSDQLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ R ADA  +          PA  G     DREL+   +  E+   
Sbjct: 65  VGLLKEEMRRLDSLVLRAADATKV----------PA--GGALAVDRELFSKYITEELAKF 112

Query: 115 ENLDVIQGEVAGFNTE 130
           +NL +   E+    +E
Sbjct: 113 DNLHIHHEEITKIPSE 128


>gi|70726664|ref|YP_253578.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus haemolyticus
           JCSC1435]
 gi|81170604|sp|Q4L5V3|TRMFO_STAHJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|68447388|dbj|BAE04972.1| glucose-inhibited division protein [Staphylococcus haemolyticus
           JCSC1435]
          Length = 435

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 195/499 (39%), Gaps = 87/499 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL-- 53
           S  V ++G G AG EAA   A+ G    LI          H T     + C+ ++ G   
Sbjct: 2   SQTVNIVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNAL 61

Query: 54  --GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
             G G L  E+  LD L+   AD A +          PA  G     DR  +   +   +
Sbjct: 62  TNGVGVLKEEMRRLDSLIISAADKARV----------PA--GGALAVDRHDFSGYITETL 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI- 169
            +  N+ VI  E+        II+             T  LTT    + ++ I GK ++ 
Sbjct: 110 RNHPNVTVINEEINSIPEGYTIIA-------------TGPLTTENLAKEIVDITGKDQLY 156

Query: 170 ---PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + +  S  +   ++K  +D G          +   +    TE++F        
Sbjct: 157 FYDAAAPIIEKESIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF-------- 198

Query: 227 SFMTDKITNRQIECGITRTN-LETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIV 283
               ++  +  +E  +  TN  E  +     +    +     K+  +GP     +ED   
Sbjct: 199 ----NRFYDAVLEAEVAPTNEFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDP-- 252

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G     
Sbjct: 253 KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +IN P  L    E  K   +  AGQ+ G  GY E+AA GLVAGIN A K      + F 
Sbjct: 313 TFINSPDVLNEKYELIKEDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLDKGEVIFP 372

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R ++ IG M               + S A+   + +P NA+  L P   K   I +++++
Sbjct: 373 R-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLPSLEKR--IKDKKER 416

Query: 463 RFAKYIQEYNFLRSLLKSL 481
             A+  +   +L +  K+L
Sbjct: 417 YEAQANRALEYLENYKKTL 435


>gi|293366785|ref|ZP_06613461.1| glucose-inhibited division protein Gid [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319086|gb|EFE59456.1| glucose-inhibited division protein Gid [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 443

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 286 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 346 QMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPR-ETMIGSMA-------------YY 391

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 392 ISHAKNEKNFQPMNANFGLLP 412


>gi|251810682|ref|ZP_04825155.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805842|gb|EES58499.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 443

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 286 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 346 QMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPR-ETMIGSMA-------------YY 391

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 392 ISHAKNEKNFQPMNANFGLLP 412


>gi|121533771|ref|ZP_01665598.1| gid protein [Thermosinus carboxydivorans Nor1]
 gi|121307762|gb|EAX48677.1| gid protein [Thermosinus carboxydivorans Nor1]
          Length = 439

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 13/146 (8%)

Query: 265 GDIKSYGPRY--CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
           G +K  G R+     I   +V+  + NG        G  T + +P           Q + 
Sbjct: 242 GPMKPVGLRHPVTGEIPYAVVQLRQDNGAATLYNIVGFQTHLKWPE----------QKRV 291

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            R IPGLE    +R G      +IN PK L PTL+ +    +  AGQI G  GY E+AA 
Sbjct: 292 FRLIPGLENAEFVRYGVMHRNTFINSPKVLKPTLQMQNNPAILFAGQITGVEGYVESAAC 351

Query: 382 GLVAGINSARKSNKLDCICFSRTDSY 407
           G+VAGIN+AR +   + + F    ++
Sbjct: 352 GIVAGINAARLARGQEPLVFPEDTAH 377


>gi|167951231|ref|ZP_02538305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 144

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           +DDL ++G  EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++
Sbjct: 1   MDDLITRGTSEPYRMFTSRAEYRLLLREDNADLRLTEQGRKLGLVDDHRWATFSR 55


>gi|319401459|gb|EFV89669.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis FRI909]
          Length = 435

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 278 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 338 QMTGVEGYVESAASGLVAGINLAHKILGKGEVIFPR-ETMIGSMA-------------FY 383

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 384 ISHAKNEKNFQPMNANFGLLP 404


>gi|325687463|gb|EGD29484.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK72]
          Length = 444

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 162/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G S  L           HKTS    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGISVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQLVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG      +     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDAL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|317129217|ref|YP_004095499.1| gid protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474165|gb|ADU30768.1| gid protein [Bacillus cellulosilyticus DSM 2522]
          Length = 434

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + I+ IPGLE   I+R G      +IN P  L PT + +    LF AG
Sbjct: 278 GFQTHMKWGPQKEVIQLIPGLENAEIVRFGVMHRNTFINSPNLLKPTYQYRDRDDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GLVAGIN++R   + + + F   ++ IG M   +T+
Sbjct: 338 QMTGVEGYVESAAAGLVAGINASRLIQEKETVTFP-NETVIGSMAQYITT 386


>gi|282876317|ref|ZP_06285184.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus epidermidis SK135]
 gi|281295342|gb|EFA87869.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus epidermidis SK135]
          Length = 435

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 278 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 338 QMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPR-ETMIGSMA-------------YY 383

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 384 ISHAKNEKNFQPMNANFGLLP 404


>gi|329724333|gb|EGG60845.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU144]
          Length = 435

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 278 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 338 QMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPR-ETMIGSMA-------------YY 383

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 384 ISHAKNEKNFQPMNANFGLLP 404


>gi|327462204|gb|EGF08531.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1]
 gi|327474224|gb|EGF19631.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK408]
 gi|327489691|gb|EGF21482.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1058]
          Length = 444

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 162/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKTS    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQLVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG      +     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDAL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMSKVYLKSRYDKGEAAYLNAPMTKQEFMNFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK+  LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKLPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|229918619|ref|YP_002887265.1| tRNA (uracil-5-)-methyltransferase Gid [Exiguobacterium sp. AT1b]
 gi|259547948|sp|C4L614|TRMFO_EXISA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|229470048|gb|ACQ71820.1| gid protein [Exiguobacterium sp. AT1b]
          Length = 436

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 24/174 (13%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE  +I+R G      +IN P  L PT + +    LF AG
Sbjct: 279 GFQTHLKWGEQKRIIRLIPGLENADIVRYGVMHRNTFINSPSLLKPTYQARTRDTLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AGIN+A+     + +   R ++ +G M   +T           
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAKMIAGEELVVLPR-ETMLGSMAHYIT----------- 386

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY-------IQEYNFL 474
           T+  ++    +P NA+  L P  ++      ++Q+R+ +Y       IQ+Y  L
Sbjct: 387 TADGKH---FQPMNANFGLVP-SLEDAPKKMKKQERYERYANRALETIQQYKDL 436


>gi|27467845|ref|NP_764482.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           ATCC 12228]
 gi|57866717|ref|YP_188399.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           RP62A]
 gi|33301130|sp|Q8CPH2|TRMFO_STAES RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170603|sp|Q5HPU1|TRMFO_STAEQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27315390|gb|AAO04524.1|AE016747_21 glucose-inhibited division protein gid [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637375|gb|AAW54163.1| gid protein [Staphylococcus epidermidis RP62A]
 gi|329736365|gb|EGG72637.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU028]
 gi|329736552|gb|EGG72818.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU045]
          Length = 435

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E K    L+ AG
Sbjct: 278 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 338 QMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPR-ETMIGSMA-------------YY 383

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 384 ISHAKNEKNFQPMNANFGLLP 404


>gi|242242533|ref|ZP_04796978.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           W23144]
 gi|242233960|gb|EES36272.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           W23144]
          Length = 443

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 176/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 13  VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +          PA  G     DR  +   +   + + 
Sbjct: 73  VGVLKEEMRHLDSLIITSADKARV----------PA--GGALAVDRHDFAGYITDTLRNH 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  EV        II+             T  LTT    + ++ I GK ++    
Sbjct: 121 PNITVLNEEVNHIPEGYTIIA-------------TGPLTTEHLAQEIVDITGKDQLYFYD 167

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S ++   ++K  +D G                   A L+ +    ++ EK+
Sbjct: 168 AAAPIIEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVATVNEFEKE 227

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 228 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 256

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R 
Sbjct: 257 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRY 314

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 315 GVMHRNTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILGK 374

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 375 GEVIFPR-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLP 412


>gi|145631885|ref|ZP_01787642.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
 gi|144982488|gb|EDJ90051.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
          Length = 132

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           + L  P+ +   L S+ P          +E+++I   Y  Y   Q  E ++ K  E   I
Sbjct: 14  DLLRRPEMTYDILTSLTPYKPAMEDREAVEQVEIAIKYQGYIEHQQEEIEKQKRHENTAI 73

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           P +FDYS +  LSNE++ KL   +P ++ QAS+I G+TPAA++++L+ +KK 
Sbjct: 74  PANFDYSKVSGLSNEVRAKLEQHRPVSIGQASRISGITPAAISIILVNLKKQ 125


>gi|133723117|gb|ABO37805.1| GidA [Lactococcus garvieae]
          Length = 160

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF AG
Sbjct: 3   GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAG 62

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+AR  N  + I F +T + IG +
Sbjct: 63  QMTGVEGYVESAASGLVAGINAARLFNGEEEIIFPQTTA-IGAL 105


>gi|328467376|gb|EGF38454.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus helveticus
           MTCC 5463]
          Length = 438

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 18/157 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G M + +T           
Sbjct: 339 QMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGSMANYVT----------- 386

Query: 428 TSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQK 462
           T+ A++    +P NA   L P   G K+    ER +K
Sbjct: 387 TASAKH---FQPMNASFALLPAWEGKKIRKKRERHEK 420


>gi|167630280|ref|YP_001680779.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Heliobacterium modesticaldum Ice1]
 gi|205830337|sp|B0TH93|TRMFO_HELMI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|167593020|gb|ABZ84768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Heliobacterium modesticaldum Ice1]
          Length = 439

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      +IN P  L PT + +K   +F AG
Sbjct: 277 GFQTHLKWPEQKRVFRMIPGLEQAEFVRYGVMHRNTFINSPTLLLPTYQLRKDPSVFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA GLVAG+N+AR
Sbjct: 337 QITGVEGYVESAAAGLVAGLNAAR 360


>gi|301066448|ref|YP_003788471.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
 gi|300438855|gb|ADK18621.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
          Length = 439

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AGIN+AR +     + F  T           T+ G +  Y   
Sbjct: 337 QMTGVEGYVESAASGLIAGINAARMALGETPLIFPET-----------TAMGSMAHYITH 385

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQK 462
           TS   +    +P NA+  + P + +K+    ER Q+
Sbjct: 386 TSAHHF----QPMNANFGIMPALTVKIRNKKERNQQ 417


>gi|260101614|ref|ZP_05751851.1| glucose-inhibited division protein [Lactobacillus helveticus DSM
           20075]
 gi|260084577|gb|EEW68697.1| glucose-inhibited division protein [Lactobacillus helveticus DSM
           20075]
          Length = 438

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 18/157 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G M + +T           
Sbjct: 339 QMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGSMANYVT----------- 386

Query: 428 TSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQK 462
           T+ A++    +P NA   L P   G K+    ER +K
Sbjct: 387 TTSAKH---FQPMNASFALLPAWEGKKIRKKRERHEK 420


>gi|257082470|ref|ZP_05576831.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           E1Sol]
 gi|256990500|gb|EEU77802.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           E1Sol]
          Length = 435

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 241 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++N  EL  PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 299 ENAEFVRYGVMHRNSFMNSPELLKPTYQSIKRDDLFFAGQMTGVEGYVESAASGLLAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +AR +   + I F R ++ +G M
Sbjct: 359 AARLAKGEEPIEFPR-ETTLGSM 380


>gi|323489571|ref|ZP_08094798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Planococcus donghaensis MPA1U2]
 gi|323396702|gb|EGA89521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Planococcus donghaensis MPA1U2]
          Length = 436

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     +ED   + GER    + L  +     +    G  T L    Q + ++ IPG
Sbjct: 240 TFGPMKPVGLEDP--KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVLKLIPG 297

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE V I+R G      +IN P+ L PT + K    +F AGQ+ G  GY E+A  GL+AGI
Sbjct: 298 LENVEIVRYGVMHRNTFINSPRVLKPTYQLKADDNIFFAGQMTGVEGYVESAGSGLLAGI 357

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           N+A+ +   D + F   ++ +G M   +T
Sbjct: 358 NAAKLALGEDLLVFP-AETALGSMARYIT 385


>gi|325696508|gb|EGD38398.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK160]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 162/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKTS    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQIVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG     V+     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDVL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|315222964|ref|ZP_07864843.1| tRNA:M(5)U-54 methyltransferase [Streptococcus anginosus F0211]
 gi|315187914|gb|EFU21650.1| tRNA:M(5)U-54 methyltransferase [Streptococcus anginosus F0211]
          Length = 455

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T ++KK   +F AG
Sbjct: 299 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTQTFQSKKQENIFFAG 358

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           Q+ G  GY E+AA GLVAGIN+AR  N  + + F
Sbjct: 359 QMTGVEGYVESAASGLVAGINAARLFNGEEALVF 392


>gi|319745032|gb|EFV97360.1| tRNA:M(5)U-54 methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  T+K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLNQTFATRKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR+ N    + F +T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARRFNGESEVVFPQTTA-IGALPHYIT 395


>gi|323466641|gb|ADX70328.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus helveticus H10]
          Length = 438

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGSMANYVTT 387


>gi|125718004|ref|YP_001035137.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sanguinis
           SK36]
 gi|166989571|sp|A3CN32|TRMFO_STRSV RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|125497921|gb|ABN44587.1| Gid-like protein, putative [Streptococcus sanguinis SK36]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 162/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKT+    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQMVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG      +     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDAL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK+  LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKLPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|161507473|ref|YP_001577427.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus helveticus
           DPC 4571]
 gi|205830338|sp|A8YV48|TRMFO_LACH4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|160348462|gb|ABX27136.1| Glucose-inhibited division protein A [Lactobacillus helveticus DPC
           4571]
          Length = 407

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGSMANYVTT 387


>gi|25011009|ref|NP_735404.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           NEM316]
 gi|77413619|ref|ZP_00789805.1| gid protein [Streptococcus agalactiae 515]
 gi|33301134|sp|Q8E5M6|TRMFO_STRA3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|23095409|emb|CAD46614.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160328|gb|EAO71453.1| gid protein [Streptococcus agalactiae 515]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  T+K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLDQTFATRKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR+ N    + F +T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARRFNGESEVVFPQTTA-IGALPHYIT 395


>gi|325694499|gb|EGD36408.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK150]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 161/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKTS    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQLVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           D++        T   +I  I  +   +   +  V+ TG      +     KI A   GD 
Sbjct: 108 DLV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDTL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|319939101|ref|ZP_08013465.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus anginosus 1_2_62CV]
 gi|319812151|gb|EFW08417.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus anginosus 1_2_62CV]
          Length = 444

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T ++KK   +F AG
Sbjct: 288 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTQTFQSKKQENIFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ R  N  + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINATRLFNGEEALVFPET 384


>gi|282901981|ref|ZP_06309879.1| Gid protein [Cylindrospermopsis raciborskii CS-505]
 gi|281193068|gb|EFA68067.1| Gid protein [Cylindrospermopsis raciborskii CS-505]
          Length = 452

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 161/406 (39%), Gaps = 69/406 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK--- 55
           + VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +     
Sbjct: 10  IQVIGGGLAGTEAAWQIAQAGVPVILHEMRPQRFSPAHHTENLAELVCSNSFGAMASDRA 69

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   AD   +          PA  G     DR  +   + + + + 
Sbjct: 70  AGLLHEELRQLDSIVISKADEHAV----------PA--GGALAVDRGKFGEDLTQTLANH 117

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +D+ +GEV      K + + IV+  +  +    +      F  G+ ++      +  +
Sbjct: 118 PLIDLRRGEV------KEVPAGIVVLASGPLTSPQLSADIQQFT-GLEYLNFFDAASPII 170

Query: 175 -GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            GDS +  +  +FM   +D G          +   +    +++Q+              +
Sbjct: 171 VGDSINRDI--AFMASRYDKG----------EAAYLNCPMSKQQY--------------L 204

Query: 234 TNRQIECGITRTNL-----ETHRIIME--NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
             R+  C   +T L     ET +       I+  A    D   YGP     + D+  R G
Sbjct: 205 EFREALCQAEQTELKDFERETAKFFEACLPIEEMAQRGEDTMRYGPLKPVGLTDE--RTG 262

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ERN   + L  E     +    G  T L    Q +  R IPGLE    +R G      ++
Sbjct: 263 ERNYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVRLGVMHRNTFL 322

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           N P+ + PTL+ K+   L  AGQ+ GT GY  A+A G +AG N+AR
Sbjct: 323 NAPQLVLPTLQFKQRHTLLAAGQLIGTEGYTAASAGGWLAGTNAAR 368


>gi|328950840|ref|YP_004368175.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451164|gb|AEB12065.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Marinithermus hydrothermalis DSM 14884]
          Length = 442

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IPGLE   I+R G      Y+N P+ L  TLE +K+  +F+AG
Sbjct: 278 GFQTGLKWGDQKEIVRLIPGLESAEIVRYGVMHRNTYLNAPRLLHSTLELRKLPRVFVAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKL 396
            + GT GY E+AA G +AG+N+AR    L
Sbjct: 338 VLAGTEGYLESAATGWLAGVNAARALQGL 366


>gi|169842216|ref|ZP_02875321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 47

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +Y+G I S GPRYCPSIEDK+V+F +++ H +FLEPEG  T  VY
Sbjct: 1   MYNGSISSTGPRYCPSIEDKVVKFNDKDSHHLFLEPEGFETAEVY 45


>gi|332799165|ref|YP_004460664.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Tepidanaerobacter sp. Re1]
 gi|332696900|gb|AEE91357.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Tepidanaerobacter sp. Re1]
          Length = 446

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T+L    Q +    IPG+ K   +R G+     +I +P  L PTLE K + GLF AG
Sbjct: 277 GFQTSLKWGEQKRVFGLIPGMGKAEFVRYGFIHRNTFIASPLYLKPTLEFKALRGLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA G+VAGIN  R   K+  I     ++  G +++ +TS
Sbjct: 337 QITGVEGYIESAASGIVAGINMKRFIRKVGPIALP-LETMTGALLNFITS 385


>gi|242373542|ref|ZP_04819116.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           M23864:W1]
 gi|242348905|gb|EES40507.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           M23864:W1]
          Length = 436

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P  L    E +    L+ AG
Sbjct: 279 GFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELEGHENLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 339 QMTGVEGYVESAASGLVAGINLAHKLAGKGEVIFPR-ETMIGSMA-------------YY 384

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 385 ISHAKNEKNFQPMNANFGLLP 405


>gi|313901985|ref|ZP_07835401.1| gid protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467774|gb|EFR63272.1| gid protein [Thermaerobacter subterraneus DSM 13965]
          Length = 457

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T+L    Q +  R IPGLE     R G      +I +PK L PT++ +K   LF AG
Sbjct: 280 GFQTSLKWGEQKRVFRMIPGLENAEFARYGVMHRNTFICSPKVLKPTMQARKRPDLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           QI G  GY E+AA G+VAGIN+AR     + + F    ++
Sbjct: 340 QITGVEGYIESAATGIVAGINAARLVRGEEPVAFPAETAH 379


>gi|152976198|ref|YP_001375715.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189040802|sp|A7GRG2|TRMFO_BACCN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|152024950|gb|ABS22720.1| gid protein [Bacillus cytotoxicus NVH 391-98]
          Length = 434

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN PK L PT + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPKLLRPTYQYKHRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|329667431|gb|AEB93379.1| glucose inhibited division protein A [Lactobacillus johnsonii DPC
           6026]
          Length = 438

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQTGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGEETLVFPKSTA-LGSMANYITT 387


>gi|227889897|ref|ZP_04007702.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319572|ref|YP_003293228.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus johnsonii FI9785]
 gi|227849341|gb|EEJ59427.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397947|emb|CAX66961.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 438

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQTGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGEETLVFPKSTA-LGSMANYITT 387


>gi|229086385|ref|ZP_04218561.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-44]
 gi|228696901|gb|EEL49710.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-44]
          Length = 434

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN PK L PT + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPKLLRPTYQYKHRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|282897627|ref|ZP_06305627.1| Gid protein [Raphidiopsis brookii D9]
 gi|281197550|gb|EFA72446.1| Gid protein [Raphidiopsis brookii D9]
          Length = 452

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 159/406 (39%), Gaps = 69/406 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK--- 55
           + VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +     
Sbjct: 10  IQVIGGGLAGTEAAWQIAQAGVPVILHEMRPQRFSPAHHTENLAELVCSNSFGAMASDRA 69

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   AD   +          PA  G     DR  +   + + + + 
Sbjct: 70  AGLLHEELRQLDSIVISKADEHAV----------PA--GGALAVDRGKFGEDLTQTLANH 117

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +D+ +GEV      K I   IV+  +  +    +      F  G+ ++      +  +
Sbjct: 118 PLIDLRRGEV------KEIPGGIVVLASGPLTSPQLSADIQQFT-GLEYLNFFDAASPII 170

Query: 175 -GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            GDS +  +  +FM   +D G          +   +    +++Q+              +
Sbjct: 171 VGDSINRDI--AFMASRYDKG----------EAAYLNCPMSKQQY--------------L 204

Query: 234 TNRQIECGITRTNL-----ETHRIIME--NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
             R+  C   +T L     ET +       I+  A    D   YGP     + D   R G
Sbjct: 205 EFREALCQAEQTELKDFERETAKFFEACLPIEEMAQRGEDTMRYGPLKPVGLTDG--RTG 262

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           ERN   + L  E     +    G  T L    Q +  R IPGLE    IR G      ++
Sbjct: 263 ERNYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFIRLGVMHRNTFL 322

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           N P+ + PTL+ K+   L  AGQ+ GT GY  A+A G +AG N+AR
Sbjct: 323 NAPQLILPTLQFKQRHTLLAAGQLIGTEGYTAASAGGWLAGTNAAR 368


>gi|213420626|ref|ZP_03353692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 102

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 47/97 (48%)

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IHIG      G
Sbjct: 1   NQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGG 60

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           R GD PS  L     +      RLKTGTP R+D +TI
Sbjct: 61  RAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTI 97


>gi|322385530|ref|ZP_08059174.1| tRNA:M(5)U-54 methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321270268|gb|EFX53184.1| tRNA:M(5)U-54 methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 444

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR  N  + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFNGEEALVFPET 384


>gi|295426273|ref|ZP_06818933.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295064012|gb|EFG54960.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 438

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P+ L  + E K+  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSLIPGLENARFVRYGKMHRNTYMASPEVLNASYEAKQQKGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   D   F   D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGKDTAVFP-VDTALGSMANYVTT 387


>gi|257869683|ref|ZP_05649336.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus gallinarum
           EG2]
 gi|257803847|gb|EEV32669.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus gallinarum
           EG2]
          Length = 435

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E+   +R G      ++N  EL   T +++K   LF AGQ+ G  GY E+AA GLVAGIN
Sbjct: 298 EQAEFVRYGVMHRNSFMNSPELLQQTYQSRKRDDLFFAGQMTGVEGYVESAASGLVAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVM 411
           +A+ +   + I F + ++ IG M
Sbjct: 358 AAKLAKGEEPIIFPQ-ETTIGSM 379


>gi|251797452|ref|YP_003012183.1| gid protein [Paenibacillus sp. JDR-2]
 gi|247545078|gb|ACT02097.1| gid protein [Paenibacillus sp. JDR-2]
          Length = 443

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN P+ + PT + K  S LF AG
Sbjct: 281 GFQTHLKWGEQKRVFSLIPGLENAEFVRFGVMHRNTFINSPRVMEPTYQLKNRSTLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AG N+AR +  L+ +     D+ +G M   +T+
Sbjct: 341 QMTGVEGYVESAASGLIAGFNAARLARGLEPLVLPE-DTTLGSMAHYITT 389


>gi|320528985|ref|ZP_08030077.1| tRNA:M(5)U-54 methyltransferase [Selenomonas artemidis F0399]
 gi|320138615|gb|EFW30505.1| tRNA:M(5)U-54 methyltransferase [Selenomonas artemidis F0399]
          Length = 443

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL     +R G      +IN P+ L PT + +  + LF AG
Sbjct: 280 GFQTRLKWAEQRRVFRMIPGLSHAEFLRYGVMHRNTFINAPRHLRPTFQLRSENTLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           Q+ G  GY E+AA GL AGIN+AR +     + F +T  +
Sbjct: 340 QMTGVEGYVESAASGLTAGINAARIAADRTPVVFPQTTCH 379



 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
          VIV+G G AG EAA  AA+ GA   L           HKT     + C+ ++ G G    
Sbjct: 4  VIVVGAGLAGSEAAWQAARRGAEVTLFEMRPGRTSPAHKTDDFAELVCSNSLRGAGLENA 63

Query: 55 KGHLVREIDALDGLMGRVADAAGI 78
           G L  E+  +D L+ R ADA  +
Sbjct: 64 VGVLKEEMRRMDSLIIRAADATAV 87


>gi|116512035|ref|YP_809251.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123125575|sp|Q02YZ3|TRMFO_LACLS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116107689|gb|ABJ72829.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactococcus lactis subsp. cremoris SK11]
          Length = 448

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+A+  N  + + F +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAKLFNDEEVVIFPKT 384


>gi|315302914|ref|ZP_07873648.1| tRNA:M(5)U-54 methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628717|gb|EFR97116.1| tRNA:M(5)U-54 methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 434

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K    LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLKPTYQLKSRDDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+AR     + I F + ++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAARFVENKELILFPK-ETAIGSLAHYITS 386


>gi|227535114|ref|ZP_03965163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187255|gb|EEI67322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 439

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG N+AR +     + F  T + +G M D +T
Sbjct: 337 QMTGVEGYVESAASGLIAGTNAARMALGETPLIFPETTA-MGSMADYIT 384


>gi|83589875|ref|YP_429884.1| tRNA (uracil-5-)-methyltransferase Gid [Moorella thermoacetica ATCC
           39073]
 gi|123524656|sp|Q2RJP8|TRMFO_MOOTA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|83572789|gb|ABC19341.1| gid protein [Moorella thermoacetica ATCC 39073]
          Length = 437

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T+L    Q +  R IPGL +   +R G      Y+N P+ L PTL+ K    LFLAG
Sbjct: 279 GFQTSLKWGEQERVFRLIPGLREAEFVRFGVMHRNTYVNSPRLLQPTLQVKGYPWLFLAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAG+N+ R
Sbjct: 339 QLTGVEGYIESAACGLVAGVNATR 362


>gi|148267741|ref|YP_001246684.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393799|ref|YP_001316474.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JH1]
 gi|189040809|sp|A6U169|TRMFO_STAA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|189040810|sp|A5ISD5|TRMFO_STAA9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147740810|gb|ABQ49108.1| gid protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946251|gb|ABR52187.1| gid protein [Staphylococcus aureus subsp. aureus JH1]
          Length = 435

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 193/506 (38%), Gaps = 107/506 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC- 455
             + F R ++ IG M               + S A+   + +P NA+  L P    L   
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP---SLETR 409

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSL 481
           I +++++  A+  +  ++L++  K+L
Sbjct: 410 IKDKKERYEAQANRALDYLKNFKKTL 435


>gi|116494888|ref|YP_806622.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
 gi|122263694|sp|Q039E2|TRMFO_LACC3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116105038|gb|ABJ70180.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
          Length = 439

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AGIN+ R +     + F  T           T+ G +  Y   
Sbjct: 337 QMTGVEGYVESAASGLIAGINATRMALGETPVIFPET-----------TAMGSMAHYITH 385

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQK 462
           TS   +    +P NA+  + P + +K+    ER Q+
Sbjct: 386 TSAHHF----QPMNANFGIMPALTVKIRNKKERNQQ 417


>gi|239636271|ref|ZP_04677273.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus warneri L37603]
 gi|239597626|gb|EEQ80121.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus warneri L37603]
          Length = 435

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 178/463 (38%), Gaps = 85/463 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIKAADKARV----------PA--GGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  EV        II+             T  LTT    + ++ I GK ++    
Sbjct: 113 PNVTVLNQEVHNIPEGYTIIA-------------TGPLTTENLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  + +  S  +   ++K  +D G          +   +    TE++F           
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF----------- 198

Query: 230 TDKITNRQIECGITRTN-LETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFG 286
            D+  N  +E  +   N  E  +     +    + +   K+  +GP     +ED   + G
Sbjct: 199 -DRFYNAVLEAEVAPVNEFEKEKYFEGCMPFEVMAARGRKTLLFGPMKPVGLEDP--KTG 255

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G      +I
Sbjct: 256 KRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFI 315

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P  L    E      ++ AGQ+ G  GY E+AA GLV+GIN A K      + F R +
Sbjct: 316 NSPDVLNEKYELIGHENIYFAGQMTGVEGYVESAASGLVSGINLAHKLLDKGEVIFPR-E 374

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           + IG M               + S A+   + +P NA+  L P
Sbjct: 375 TMIGSMA-------------YYISHAKNEKNFQPMNANFGLLP 404


>gi|134299830|ref|YP_001113326.1| gid protein [Desulfotomaculum reducens MI-1]
 gi|189040805|sp|A4J5Z8|TRMFO_DESRM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|134052530|gb|ABO50501.1| gid protein [Desulfotomaculum reducens MI-1]
          Length = 441

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P  L PTL+ K+   +F AG
Sbjct: 280 GFQTNLKWGEQKRVFSFIPGLEDAEFVRYGVMHRNTYITSPVLLQPTLQMKEHPRIFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           QI G  GY E+AA GL+AGIN+A  + + D + F +  ++  +M
Sbjct: 340 QITGVEGYVESAAAGLIAGINAAALAKQKDLLIFPKETAHGALM 383


>gi|55981411|ref|YP_144708.1| tRNA (uracil-5-)-methyltransferase Gid [Thermus thermophilus HB8]
 gi|81821827|sp|Q5SID2|TRMFO_THET8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|237823899|pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
 gi|237823900|pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Tetrahydrofolate
 gi|55772824|dbj|BAD71265.1| glucose inhibited division protein [Thermus thermophilus HB8]
          Length = 443

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  TLE ++  GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + G  GY E+AA G +AG+N+ARK+  L  +     +S +G ++  L +
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVA-PPEESMLGGLVRYLAT 384


>gi|42519035|ref|NP_964965.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii NCC
           533]
 gi|50400234|sp|Q74JJ8|TRMFO_LACJO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|41583322|gb|AAS08931.1| glucose inhibited division protein A [Lactobacillus johnsonii NCC
           533]
          Length = 438

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQTGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGEETLFFPKSTA-LGSMANYITT 387


>gi|323464637|gb|ADX76790.1| tRNA (uracil-5-)-methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 434

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P+ L    E K    LF AG
Sbjct: 277 GFQTRLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPEVLSEIYEFKNRKNLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA G++AGIN A +      + F R ++ +G M               +
Sbjct: 337 QMTGVEGYVESAASGMIAGINLAHRMLGKADVVFPR-ETMLGSMA-------------YY 382

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A    + +P NA+  L P
Sbjct: 383 ISHATNNKNFQPMNANFGLVP 403


>gi|320161094|ref|YP_004174318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Anaerolinea thermophila UNI-1]
 gi|319994947|dbj|BAJ63718.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Anaerolinea thermophila UNI-1]
          Length = 456

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 161/397 (40%), Gaps = 56/397 (14%)

Query: 16  AGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----GKGHLVREI 62
           AG EAA  AAK G    L           H TS +G + C+ ++G        G L  E+
Sbjct: 12  AGSEAAWQAAKAGLKVDLYEMRPQKSTGAHSTSFLGELVCSNSLGSALVDRASGLLKEEL 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
             L  L+  VA+   +          PA  G     DRE++   +  +I S  N+ VI+ 
Sbjct: 72  RLLGSLLLSVAEECAL----------PA--GGALAVDREMFAQTITEKIESHPNIRVIRE 119

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT----FLRGVIHIGKLKIPAGRMGDSP 178
           E     +   II+S  +   ++ +   +   TGT    F   +  I + +          
Sbjct: 120 EYPTIPSRPAIIASGPLTSPTLSKA--IQELTGTEHLFFFDAIAPIVRAE---------- 167

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           + ++  +F    +  G ++       +G  I    T +++  E+ I     +++I  R+ 
Sbjct: 168 TINMEKAFRASRYQRGVIE-------EGDYINCPFTREEY--EQFIEALLNSERIPLREF 218

Query: 239 ECGI---TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           E  I    R     +      I+  A    +  ++GP     + D     G+R    + L
Sbjct: 219 EEEIKHGVRAGAHEYFEGCLPIEVLAARGKEALAFGPMRPIGLRDP--HTGKRPYAVVQL 276

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPT 354
             + L   +    G  T L    Q +  R IPGLE    +R G      +I +P  L PT
Sbjct: 277 RQDNLAGTLYNLVGFQTNLTFPEQRRVFRMIPGLENAEFVRYGQMHRNTFIASPALLLPT 336

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           L+ +K S LF AGQI G  GY    A GL+AGIN+AR
Sbjct: 337 LQFRKRSDLFFAGQITGVEGYMGNIATGLLAGINAAR 373


>gi|300361599|ref|ZP_07057776.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300354218|gb|EFJ70089.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 438

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQAGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREAIGEETLVFPKSTA-LGSMAHYITT 387


>gi|319892266|ref|YP_004149141.1| tRNA:m(5)U-54 MTase gid [Staphylococcus pseudintermedius HKU10-03]
 gi|317161962|gb|ADV05505.1| tRNA:m(5)U-54 MTase gid [Staphylococcus pseudintermedius HKU10-03]
          Length = 434

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE V+I+R G      +IN P+ L    E K    LF AG
Sbjct: 277 GFQTRLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPEVLSEIYEFKNRKNLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA G++AGIN A +      + F R ++ +G M               +
Sbjct: 337 QMTGVEGYVESAASGMIAGINLAHRMLGKADVVFPR-ETMLGSMA-------------YY 382

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A    + +P NA+  L P
Sbjct: 383 ISHATNNKNFQPMNANFGLVP 403


>gi|324994465|gb|EGC26378.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK678]
          Length = 444

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+N P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMNSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|313633456|gb|EFS00281.1| tRNA:M(5)U-54 methyltransferase [Listeria seeligeri FSL N1-067]
          Length = 219

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 63  GFQTHLKWGEQKRVFSMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKSRNDLFFAG 122

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A      + I F + ++ IG + + +TS
Sbjct: 123 QMTGVEGYVESAASGLAAGINAANFVEDKELIIFPK-ETAIGSLANYITS 171


>gi|157150106|ref|YP_001450480.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189040812|sp|A8AXH0|TRMFO_STRGC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157074900|gb|ABV09583.1| Glucose inhibited division protein A [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 444

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 166/430 (38%), Gaps = 73/430 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQR 109
                     DAL   +G + +    + R L+   +K   A R P   A      LA+ R
Sbjct: 60  ----------DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDR 99

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           E  SQ   +++        T   +I  I  +   +      V+ TG      +     KI
Sbjct: 100 EGFSQMVTELV--------TNHPLIEVIREEITEIPNDDITVIATGPLTSDAL---AEKI 148

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIP 225
            A   G        N F  +D     +   T   +D   I     +DK E  + +  +  
Sbjct: 149 HALNGG--------NGFYFYDAAAPIIDVNT---IDMTKIYLKSRYDKGEAAYLNAPMTK 197

Query: 226 FSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDK 281
             FM   D + N + E  +   + E  +     +    +    IK+  YGP     +E  
Sbjct: 198 QEFMDFHDALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYP 254

Query: 282 IVRFGERNGHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
               G R+G        + L  +     +    G  T L    Q +  + IPGLE    +
Sbjct: 255 DDYQGPRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFV 314

Query: 336 RPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   
Sbjct: 315 RYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFK 374

Query: 395 KLDCICFSRT 404
             + + F  T
Sbjct: 375 GEEALVFPET 384


>gi|50914228|ref|YP_060200.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10394]
 gi|50903302|gb|AAT87017.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10394]
          Length = 494

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  +TIPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 337 GFQTHLKWGEQKRVFQTIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 396

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T +
Sbjct: 397 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTTA 435


>gi|229104394|ref|ZP_04235063.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-28]
 gi|228679092|gb|EEL33300.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-28]
          Length = 434

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AGIN+AR     + +  S   + +G M + +T+
Sbjct: 339 QMTGVEGYVESAASGLLAGINAARLVKGEEPVVLSPVTA-MGSMANYITA 387


>gi|298694543|gb|ADI97765.1| probable glucose inhibited division protein A [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 435

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRSVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|237823901|pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Glutathione
          Length = 443

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  TLE ++  GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQXIPGLENAEIVRYGVXHRNTYLNAPRLLGETLEFREAEGLYAAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + G  GY E+AA G +AG+N+ARK+  L  +     +S +G ++  L +
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVA-PPEESXLGGLVRYLAT 384


>gi|78779510|ref|YP_397622.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9312]
 gi|123554076|sp|Q31AA9|TRMFO_PROM9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78713009|gb|ABB50186.1| gid protein [Prochlorococcus marinus str. MIT 9312]
          Length = 470

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 202/497 (40%), Gaps = 87/497 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++  +VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDK--EVIVIGAGLAGSEAAWQIANAGVPVKLVEMRPYKSTPAHHTGEFGELVCSNSFG 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +      G L +E+   + L+ + AD   +          PA  G     DR  +  A+
Sbjct: 59  AISADRAAGLLQKELRIFNSLIVQTADKFAV----------PA--GGALAVDRSKFSNAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   +++ + E     +++NI                 +L TG      +   K+
Sbjct: 107 TETLSNHPLINIKRIEQLDLPSKENI----------------TILATGPLTSDDLAY-KI 149

Query: 168 KIPAG----RMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +   G       D+ S  ++   +  +  F   R   G PA L+      DK E      
Sbjct: 150 QDFTGIDDCHFFDAASPIIYGDSIDHEIVFKASRYDKGDPAYLNCPM---DKYEYTNFRN 206

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS---GDIKSYG---PRYC 275
           +LI       K   ++        N     + +E I    I +   G +KS G   P++ 
Sbjct: 207 QLIEGEQANLKDFEKE------SANFFEACLPIEEIARRGIDTMRYGPLKSIGLWNPKWG 260

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
             + D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +
Sbjct: 261 -DLFDRDNRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRIIPGLEKAEFV 319

Query: 336 RPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      ++ +PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  + 
Sbjct: 320 RFGVMHRNTFLESPKLLLPTLQFMKRESLFAAGQITGTEGYAAAAAGGLLAGINASLIAK 379

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
               + F   +S IG +++ ++++      ++ +S+ +           N+  PI    G
Sbjct: 380 GEIAVTFP-DESMIGSLMNFISNRN-----KIMSSQKK-----------NKFQPIPASFG 422

Query: 455 CIGE---RRQKRFAKYI 468
            + E   R + + ++YI
Sbjct: 423 LVPELTKRIKDKRSRYI 439


>gi|77405695|ref|ZP_00782782.1| gid protein [Streptococcus agalactiae H36B]
 gi|77408608|ref|ZP_00785343.1| gid protein [Streptococcus agalactiae COH1]
 gi|77172801|gb|EAO75935.1| gid protein [Streptococcus agalactiae COH1]
 gi|77175691|gb|EAO78473.1| gid protein [Streptococcus agalactiae H36B]
          Length = 444

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  T+K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLNQTFATRKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+ R+ N    + F +T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFNGESEVVFPQTTA-IGALPHYIT 395


>gi|73919636|sp|Q5XC46|TRMFO_STRP6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  +TIPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQTIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|288905293|ref|YP_003430515.1| glucose-inhibited division protein [Streptococcus gallolyticus
           UCN34]
 gi|306831372|ref|ZP_07464531.1| tRNA:M(5)U-54 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288732019|emb|CBI13584.1| glucose-inhibited division protein [Streptococcus gallolyticus
           UCN34]
 gi|304426432|gb|EFM29545.1| tRNA:M(5)U-54 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 445

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T  T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFATRQNPDLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T
Sbjct: 349 QMTGVEGYVESAASGLVAGINAVRRFKGEEAVIFPQT 385


>gi|118479054|ref|YP_896205.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis str.
           Al Hakam]
 gi|118418279|gb|ABK86698.1| glucose-inhibited division protein A [Bacillus thuringiensis str.
           Al Hakam]
          Length = 452

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 297 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 356

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 357 QMTGVEGYVESAASGLLAGINAAR 380


>gi|65321159|ref|ZP_00394118.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Bacillus anthracis str. A2012]
          Length = 452

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 297 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 356

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 357 QMTGVEGYVESAASGLLAGINAAR 380


>gi|228992560|ref|ZP_04152487.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus pseudomycoides DSM 12442]
 gi|228767194|gb|EEM15830.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus pseudomycoides DSM 12442]
          Length = 434

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P+ L PT + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPRLLRPTYQYKHRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|146318555|ref|YP_001198267.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 05ZYH33]
 gi|146320753|ref|YP_001200464.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 98HAH33]
 gi|253751678|ref|YP_003024819.1| protein Gid homolog [Streptococcus suis SC84]
 gi|253753580|ref|YP_003026721.1| protein Gid homolog [Streptococcus suis P1/7]
 gi|253755607|ref|YP_003028747.1| protein Gid homolog [Streptococcus suis BM407]
 gi|166989570|sp|A4W125|TRMFO_STRS2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989572|sp|A4VUS8|TRMFO_STRSY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145689361|gb|ABP89867.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus suis 05ZYH33]
 gi|145691559|gb|ABP92064.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus suis 98HAH33]
 gi|251815967|emb|CAZ51583.1| protein Gid homolog [Streptococcus suis SC84]
 gi|251818071|emb|CAZ55863.1| protein Gid homolog [Streptococcus suis BM407]
 gi|251819826|emb|CAR45789.1| protein Gid homolog [Streptococcus suis P1/7]
 gi|292558324|gb|ADE31325.1| Gid protein [Streptococcus suis GZ1]
 gi|319758105|gb|ADV70047.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis JS14]
          Length = 444

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  TKK   LF AG
Sbjct: 288 GFQTHLKWGEQKRIFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFATKKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+ +  + + F +T + IG +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFHGEEPVIFPQTTA-IGAL 390



 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 25/128 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AG EAA   AK G    L           HKT     + C+ +  G       G
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSFRGDSLTNAVG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++ R  +A  +          PA  G     DRE +  A+  EI +   
Sbjct: 68  LLKEEMRRLDSIIMRAGEAHRV----------PA--GGAMAMDRENFSQAVTDEIHNHPL 115

Query: 117 LDVIQGEV 124
           ++VI+GE+
Sbjct: 116 IEVIRGEI 123


>gi|325978278|ref|YP_004287994.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178206|emb|CBZ48250.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 445

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T  T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFATRQNPDLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T
Sbjct: 349 QMTGVEGYVESAASGLVAGINAVRRFKGEEAVIFPQT 385


>gi|116629572|ref|YP_814744.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus gasseri ATCC
           33323]
 gi|282852049|ref|ZP_06261407.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 224-1]
 gi|311110784|ref|ZP_07712181.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri MV-22]
 gi|122273490|sp|Q043R6|TRMFO_LACGA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116095154|gb|ABJ60306.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus gasseri ATCC 33323]
 gi|282556809|gb|EFB62413.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 224-1]
 gi|311065938|gb|EFQ46278.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri MV-22]
          Length = 438

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQAGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GL+AGIN+AR++   + + F ++ + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAARETVGEETLVFPKSTA-LGSMAHYITT 387


>gi|282916511|ref|ZP_06324269.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770315|ref|ZP_06343207.1| methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus H19]
 gi|282318998|gb|EFB49350.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460462|gb|EFC07552.1| methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus H19]
          Length = 435

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEIIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISRPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|228998608|ref|ZP_04158195.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock3-17]
 gi|229006108|ref|ZP_04163796.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock1-4]
 gi|228755184|gb|EEM04541.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock1-4]
 gi|228761076|gb|EEM10035.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock3-17]
          Length = 434

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P+ L PT + K    LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPRLLRPTYQYKHRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|22537130|ref|NP_687981.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           2603V/R]
 gi|76788131|ref|YP_329685.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           A909]
 gi|76797793|ref|ZP_00780059.1| gid protein [Streptococcus agalactiae 18RS21]
 gi|77412433|ref|ZP_00788739.1| gid protein [Streptococcus agalactiae CJB111]
 gi|33301133|sp|Q8DZX5|TRMFO_STRA5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123601865|sp|Q3K1B8|TRMFO_STRA1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|22533992|gb|AAM99853.1|AE014236_7 gid protein [Streptococcus agalactiae 2603V/R]
 gi|76563188|gb|ABA45772.1| gid protein [Streptococcus agalactiae A909]
 gi|76586869|gb|EAO63361.1| gid protein [Streptococcus agalactiae 18RS21]
 gi|77161524|gb|EAO72529.1| gid protein [Streptococcus agalactiae CJB111]
          Length = 444

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  T+K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLNQTFATRKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+ R+ N    + F +T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFNGESEVVFPQTTA-IGALPHYIT 395


>gi|15924241|ref|NP_371775.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926834|ref|NP_374367.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus N315]
 gi|21282863|ref|NP_645951.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486090|ref|YP_043311.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651820|ref|YP_186126.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus COL]
 gi|82750852|ref|YP_416593.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           RF122]
 gi|87161842|ref|YP_493841.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194959|ref|YP_499759.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221373|ref|YP_001332195.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979572|ref|YP_001441831.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509417|ref|YP_001575076.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142041|ref|ZP_03566534.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253315608|ref|ZP_04838821.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006038|ref|ZP_05144639.2| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795693|ref|ZP_05644672.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9781]
 gi|258415917|ref|ZP_05682187.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9763]
 gi|258421679|ref|ZP_05684603.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9719]
 gi|258434835|ref|ZP_05688909.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9299]
 gi|258444589|ref|ZP_05692918.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A8115]
 gi|258447578|ref|ZP_05695722.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6300]
 gi|258449420|ref|ZP_05697523.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6224]
 gi|258452550|ref|ZP_05700556.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5948]
 gi|258454799|ref|ZP_05702763.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5937]
 gi|262051313|ref|ZP_06023536.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|269202867|ref|YP_003282136.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892739|ref|ZP_06300974.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8117]
 gi|282920495|ref|ZP_06328216.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9765]
 gi|282927593|ref|ZP_06335209.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A10102]
 gi|284024244|ref|ZP_06378642.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848246|ref|ZP_06788993.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9754]
 gi|295406187|ref|ZP_06815994.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8819]
 gi|296274809|ref|ZP_06857316.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208103|ref|ZP_06924534.1| FADH(2)-oxidizing protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244415|ref|ZP_06928298.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8796]
 gi|300912184|ref|ZP_07129627.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381185|ref|ZP_07363838.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54037184|sp|P64235|TRMFO_STAAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54037185|sp|P64236|TRMFO_STAAW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54041088|sp|P64234|TRMFO_STAAM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170600|sp|Q5HGI1|TRMFO_STAAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170602|sp|Q6G9W2|TRMFO_STAAS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|122539696|sp|Q2FZ31|TRMFO_STAA8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123486195|sp|Q2FHI7|TRMFO_STAA3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123549066|sp|Q2YXL7|TRMFO_STAAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989568|sp|A7X1M6|TRMFO_STAA1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|172048861|sp|A6QGF1|TRMFO_STAAE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|189040811|sp|A8Z3T1|TRMFO_STAAT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13701051|dbj|BAB42346.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247021|dbj|BAB57413.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204302|dbj|BAB94999.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244533|emb|CAG42962.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286006|gb|AAW38100.1| Gid protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656383|emb|CAI80802.1| probable glucose inhibited division protein A [Staphylococcus
           aureus RF122]
 gi|87127816|gb|ABD22330.1| glucose inhibited division protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202517|gb|ABD30327.1| gid protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374173|dbj|BAF67433.1| glucose inhibited division protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721707|dbj|BAF78124.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368226|gb|ABX29197.1| glucose-inhibited division protein Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257789665|gb|EEV28005.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9781]
 gi|257839253|gb|EEV63727.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9763]
 gi|257842365|gb|EEV66790.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9719]
 gi|257849196|gb|EEV73178.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9299]
 gi|257850082|gb|EEV74035.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A8115]
 gi|257853769|gb|EEV76728.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6300]
 gi|257857408|gb|EEV80306.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6224]
 gi|257859768|gb|EEV82610.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5948]
 gi|257863182|gb|EEV85946.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5937]
 gi|259160688|gb|EEW45709.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|262075157|gb|ACY11130.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940742|emb|CBI49124.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590596|gb|EFB95673.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A10102]
 gi|282594157|gb|EFB99144.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9765]
 gi|282764736|gb|EFC04861.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8117]
 gi|283470466|emb|CAQ49677.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ST398]
 gi|285816933|gb|ADC37420.1| tRNA:m(5)U-54 MTase gid [Staphylococcus aureus 04-02981]
 gi|294825046|gb|EFG41468.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9754]
 gi|294968775|gb|EFG44797.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8819]
 gi|296887346|gb|EFH26248.1| FADH(2)-oxidizing protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178445|gb|EFH37691.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8796]
 gi|300886430|gb|EFK81632.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751074|gb|ADL65251.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340168|gb|EFM06109.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829645|emb|CBX34487.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131044|gb|EFT87028.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198491|gb|EFU28820.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140932|gb|EFW32779.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144352|gb|EFW36118.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323441029|gb|EGA98736.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus O11]
 gi|323443898|gb|EGB01509.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus O46]
 gi|329313921|gb|AEB88334.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727839|gb|EGG64290.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 435

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|205373362|ref|ZP_03226166.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus coahuilensis m4-4]
          Length = 433

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   IIR G      +IN PK L  T + K    L  AG
Sbjct: 277 GFQTHLKWGPQKEVLQLIPGLENAEIIRYGVMHRNTFINSPKILKSTYQHKDRPTLLFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN+A+ +   + + F    + IG M + +T           
Sbjct: 337 QMTGVEGYVESAASGLVAGINAAKLALGEEPVVFPE-QTAIGSMANYIT----------- 384

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQE-YNFLRSL 477
           T+ A+   + +P NA+  L P +  K+    ER ++   + ++   NF++SL
Sbjct: 385 TTNAK---NFQPMNANFGLFPALDKKIKNKQERNEQHATRALETIQNFMKSL 433


>gi|220931599|ref|YP_002508507.1| gid protein [Halothermothrix orenii H 168]
 gi|219992909|gb|ACL69512.1| gid protein [Halothermothrix orenii H 168]
          Length = 437

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 24/178 (13%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE   I+R G      Y+N PK L    + +    +F AG
Sbjct: 278 GFQTRLKWGEQKRIINMIPGLENAEIVRYGVMHRNTYLNSPKLLNSCYQLRHKENIFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG+N+AR     + + F RT           T+ G L  Y   
Sbjct: 338 QITGVEGYVESASSGLIAGLNAARLLQGKELLRFPRT-----------TAHGALSSYISN 386

Query: 428 TSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            ++ +    L+P N +  L  P+ +K+    ER++K+  + +++       LK  +LT
Sbjct: 387 PAKDK----LQPMNINFGLFPPLDIKIRNKRERKEKKGTRALED-------LKGFMLT 433


>gi|258423908|ref|ZP_05686793.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9635]
 gi|257845937|gb|EEV69966.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9635]
          Length = 435

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 AEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|146296273|ref|YP_001180044.1| gid protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205830328|sp|A4XIW8|TRMFO_CALS8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145409849|gb|ABP66853.1| gid protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 435

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G   +  YIN P+ L   L  KK   +F AG
Sbjct: 277 GFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPQVLTKFLSLKKYPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA G+VAGIN+AR
Sbjct: 337 QITGVEGYLESAATGIVAGINAAR 360


>gi|75763958|ref|ZP_00743585.1| Glucose inhibited division protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488551|gb|EAO52140.1| Glucose inhibited division protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 252

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 107 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 166

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 167 QMTGVEGYVESAASGLLAGINAAR 190


>gi|239631512|ref|ZP_04674543.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525977|gb|EEQ64978.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 439

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AG N+AR +     + F  T           T+ G +  Y   
Sbjct: 337 QMTGVEGYVESAASGLIAGTNAARMALGETPLIFPET-----------TAMGSMAHYITH 385

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQK 462
           TS   +    +P NA+  + P + +K+    ER Q+
Sbjct: 386 TSAHHF----QPMNANFGIMPALTVKIRNKKERNQQ 417


>gi|33240036|ref|NP_874978.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664815|sp|Q7VD04|TRMFO_PROMA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33237562|gb|AAP99630.1| NAD(FAD)-utilizing enzyme possibly [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 468

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 158/418 (37%), Gaps = 71/418 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + +S  ++VIG G AG EAA   A  G    LI          H ++    + C+ + G 
Sbjct: 1   MGQSTPLLVIGAGLAGSEAAWQIASAGIPVKLIEMRPCKRSPAHHSNDFAELVCSNSFGA 60

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           L      G L  E+  L   + + AD   +          PA  G     DR  +   + 
Sbjct: 61  LSSDRASGLLQEELRILKSFVIKTADEHSV----------PA--GGALAVDRNKFSSYIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           ++I S   + V + E+     E  I                 VL TG      +  G LK
Sbjct: 109 KKISSHPLITVQRDEIHSLPFENQI----------------SVLATGPLTSEHL-AGDLK 151

Query: 169 IPAG----RMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
              G       D+ S  +    + F   F   R   G     D   +     + Q+   R
Sbjct: 152 NFTGLEECHFFDAASPIIEGESIDFSLAFRASRYDKG-----DADYVNCPLNKDQYLKFR 206

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP---------R 273
               S   D+   +  E G++  NL    + +E +   A    D   YGP         R
Sbjct: 207 SELLS--ADQAEIKDFEKGVS--NLFEGCLPIEEL---ARRGEDTMRYGPLKPVGLWDNR 259

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           +   + DK +R  +R    + L  E  N  +    G  T L    Q + IR IPGL+K  
Sbjct: 260 WG-DLHDKELRKTKRAYAVVQLRQEDKNGHLWNLVGFQTNLKWGEQKRIIRLIPGLQKAE 318

Query: 334 IIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
            +R G      +I +PK L PTL+ +K   L  AGQI GT GY  A A G +AG N+A
Sbjct: 319 FVRLGVMHRNTFIESPKLLNPTLQFRKRLNLLAAGQITGTEGYAAAVAGGWLAGTNAA 376


>gi|228902335|ref|ZP_04066492.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 4222]
 gi|228857304|gb|EEN01807.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 4222]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|257425305|ref|ZP_05601730.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257433359|ref|ZP_05609717.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436201|ref|ZP_05612248.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282910823|ref|ZP_06318626.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914028|ref|ZP_06321815.1| Gid protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918950|ref|ZP_06326685.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924073|ref|ZP_06331749.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501060|ref|ZP_06666911.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510022|ref|ZP_06668730.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526608|ref|ZP_06671293.1| Gid protein [Staphylococcus aureus subsp. aureus M1015]
 gi|257271762|gb|EEV03900.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257281452|gb|EEV11589.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284483|gb|EEV14603.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314045|gb|EFB44437.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316760|gb|EFB47134.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322096|gb|EFB52420.1| Gid protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325428|gb|EFB55737.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|290920680|gb|EFD97743.1| Gid protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096065|gb|EFE26326.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466966|gb|EFF09484.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|312438370|gb|ADQ77441.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 435

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEAAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|51245821|ref|YP_065705.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfotalea psychrophila
           LSv54]
 gi|81641897|sp|Q6ALS7|TRMFO_DESPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|50876858|emb|CAG36698.1| probable glucose-inhibited division protein [Desulfotalea
           psychrophila LSv54]
          Length = 444

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLET 357
           G  T + YP           Q +  R IPG+E V  +R G      +I   EL   TL+ 
Sbjct: 283 GFQTKMTYPE----------QKRIFRMIPGMENVEFVRLGSIHRNTFICAPELLADTLQI 332

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           KK   L LAGQ++G  GY E+AA GL+AGIN+AR++   + +     +  +G M+  LT
Sbjct: 333 KKRPDLLLAGQLSGVEGYIESAAMGLLAGINAARRAMGEELVS-PPAEMALGAMVGHLT 390



 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N    VI+IGGG AG EAA  AA  G    L+  K         +P +G L   + +R 
Sbjct: 1   MNNMNKVIIIGGGLAGSEAAWQAANRGCQVELVDMKPEKYSPAHSSPLLGELVCSNSLRS 60

Query: 62  IDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLD 118
            D     GLM R  +       +++V    AV   +  A DR+ +  A+   + S  N+ 
Sbjct: 61  NDPTSAVGLMKR--EMRFFNSLIMDVADSTAVPAGKALAVDRDKFAEAITARLESHPNIS 118

Query: 119 VIQGEV 124
           +   EV
Sbjct: 119 ISHREV 124


>gi|30263836|ref|NP_846213.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Ames]
 gi|47529260|ref|YP_020609.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186682|ref|YP_029934.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Sterne]
 gi|165873313|ref|ZP_02217918.1| gid protein [Bacillus anthracis str. A0488]
 gi|167642030|ref|ZP_02400260.1| gid protein [Bacillus anthracis str. A0193]
 gi|170709359|ref|ZP_02899773.1| gid protein [Bacillus anthracis str. A0389]
 gi|177655997|ref|ZP_02937124.1| gid protein [Bacillus anthracis str. A0174]
 gi|227813260|ref|YP_002813269.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229602681|ref|YP_002868070.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. A0248]
 gi|254735870|ref|ZP_05193576.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Western North America USA6153]
 gi|254751201|ref|ZP_05203240.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Vollum]
 gi|254759316|ref|ZP_05211341.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Australia 94]
 gi|33301123|sp|Q81WK3|TRMFO_BACAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789165|sp|C3P5N4|TRMFO_BACAA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789166|sp|C3L795|TRMFO_BACAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|30258480|gb|AAP27699.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. Ames]
 gi|47504408|gb|AAT33084.1| gid protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180609|gb|AAT55985.1| gid protein [Bacillus anthracis str. Sterne]
 gi|164710951|gb|EDR16523.1| gid protein [Bacillus anthracis str. A0488]
 gi|167510010|gb|EDR85426.1| gid protein [Bacillus anthracis str. A0193]
 gi|170125733|gb|EDS94646.1| gid protein [Bacillus anthracis str. A0389]
 gi|172079896|gb|EDT65004.1| gid protein [Bacillus anthracis str. A0174]
 gi|227006782|gb|ACP16525.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229267089|gb|ACQ48726.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. A0248]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|30021920|ref|NP_833551.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus ATCC 14579]
 gi|229047518|ref|ZP_04193108.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH676]
 gi|229111303|ref|ZP_04240856.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-15]
 gi|229129108|ref|ZP_04258081.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-Cer4]
 gi|33301121|sp|Q819X4|TRMFO_BACCR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|29897476|gb|AAP10752.1| Glucose inhibited division protein A [Bacillus cereus ATCC 14579]
 gi|228654345|gb|EEL10210.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-Cer4]
 gi|228672079|gb|EEL27370.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-15]
 gi|228723765|gb|EEL75120.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH676]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|255029341|ref|ZP_05301292.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           LO28]
          Length = 259

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 103 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 162

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 163 QMTGVEGYVESAASGLAAGINAANFIQEKELVVFP-TETAIGSLAHYITS 211


>gi|218231463|ref|YP_002368633.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus B4264]
 gi|228922586|ref|ZP_04085886.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954108|ref|ZP_04116137.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960048|ref|ZP_04121712.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229071330|ref|ZP_04204553.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus F65185]
 gi|229081087|ref|ZP_04213597.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock4-2]
 gi|229146403|ref|ZP_04274774.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST24]
 gi|229152031|ref|ZP_04280226.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1550]
 gi|229180108|ref|ZP_04307452.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 172560W]
 gi|229192001|ref|ZP_04318971.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 10876]
 gi|296504327|ref|YP_003666027.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           BMB171]
 gi|226707905|sp|B7HDV5|TRMFO_BACC4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|218159420|gb|ACK59412.1| gid protein [Bacillus cereus B4264]
 gi|228591552|gb|EEK49401.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 10876]
 gi|228603317|gb|EEK60794.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 172560W]
 gi|228631380|gb|EEK88014.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1550]
 gi|228637036|gb|EEK93495.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST24]
 gi|228702131|gb|EEL54607.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock4-2]
 gi|228711784|gb|EEL63736.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus F65185]
 gi|228799564|gb|EEM46517.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805674|gb|EEM52264.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837015|gb|EEM82356.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|296325379|gb|ADH08307.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           BMB171]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|306833468|ref|ZP_07466595.1| tRNA:M(5)U-54 methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304424238|gb|EFM27377.1| tRNA:M(5)U-54 methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 445

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T  T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFATRQNPDLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T
Sbjct: 349 QMTGVEGYVESAASGLVAGINAVRRFKGEEVVIFPQT 385


>gi|229019027|ref|ZP_04175868.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1273]
 gi|229025273|ref|ZP_04181693.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1272]
 gi|228736026|gb|EEL86601.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1272]
 gi|228742267|gb|EEL92426.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1273]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|163941570|ref|YP_001646454.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus weihenstephanensis
           KBAB4]
 gi|229134639|ref|ZP_04263449.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST196]
 gi|229168571|ref|ZP_04296294.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH621]
 gi|205830323|sp|A9VT70|TRMFO_BACWK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|163863767|gb|ABY44826.1| gid protein [Bacillus weihenstephanensis KBAB4]
 gi|228614977|gb|EEK72079.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH621]
 gi|228648900|gb|EEL04925.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST196]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|254721982|ref|ZP_05183771.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           A1055]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|228986975|ref|ZP_04147101.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772753|gb|EEM21193.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|229197942|ref|ZP_04324657.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1293]
 gi|228585521|gb|EEK43624.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1293]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|47570333|ref|ZP_00240978.1| gid protein [Bacillus cereus G9241]
 gi|47552998|gb|EAL11404.1| gid protein [Bacillus cereus G9241]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|315640712|ref|ZP_07895814.1| tRNA:M(5)U-54 methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483467|gb|EFU73961.1| tRNA:M(5)U-54 methyltransferase [Enterococcus italicus DSM 15952]
          Length = 464

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE   I+R G      ++N  EL   T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFRMIPGLENAEIVRYGVMHRNSFMNAPELLQQTYQSRLRDDLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAG+N+AR +   + I F + ++ IG M
Sbjct: 351 QMTGVEGYVESAASGLVAGMNAARLAKGQEPIIFPQ-ETAIGSM 393


>gi|229162768|ref|ZP_04290725.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus R309803]
 gi|228620650|gb|EEK77519.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus R309803]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|218898985|ref|YP_002447396.1| gid protein [Bacillus cereus G9842]
 gi|228940920|ref|ZP_04103479.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228966777|ref|ZP_04127821.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228973849|ref|ZP_04134425.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980439|ref|ZP_04140749.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis Bt407]
 gi|226707904|sp|B7IUJ1|TRMFO_BACC2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|218544000|gb|ACK96394.1| gid protein [Bacillus cereus G9842]
 gi|228779259|gb|EEM27516.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis Bt407]
 gi|228785874|gb|EEM33877.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792876|gb|EEM40434.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818756|gb|EEM64822.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941601|gb|AEA17497.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|49478916|ref|YP_037893.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141656|ref|YP_085173.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus E33L]
 gi|170689656|ref|ZP_02880836.1| gid protein [Bacillus anthracis str. A0465]
 gi|196042357|ref|ZP_03109628.1| gid protein [Bacillus cereus NVH0597-99]
 gi|218904960|ref|YP_002452794.1| gid protein [Bacillus cereus AH820]
 gi|228916469|ref|ZP_04080035.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928880|ref|ZP_04091912.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947551|ref|ZP_04109841.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229092874|ref|ZP_04224008.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-42]
 gi|229123346|ref|ZP_04252550.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 95/8201]
 gi|229186072|ref|ZP_04313241.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BGSC 6E1]
 gi|254683461|ref|ZP_05147321.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739604|ref|ZP_05197298.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Kruger B]
 gi|301055322|ref|YP_003793533.1| glucose inhibited division protein A [Bacillus anthracis CI]
 gi|81170593|sp|Q6HEY3|TRMFO_BACHK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81686578|sp|Q636J4|TRMFO_BACCZ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707903|sp|B7JJB0|TRMFO_BACC0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49330472|gb|AAT61118.1| glucose inhibited division protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975125|gb|AAU16675.1| glucose inhibited division protein A [Bacillus cereus E33L]
 gi|170666380|gb|EDT17163.1| gid protein [Bacillus anthracis str. A0465]
 gi|196026813|gb|EDX65449.1| gid protein [Bacillus cereus NVH0597-99]
 gi|218539529|gb|ACK91927.1| gid protein [Bacillus cereus AH820]
 gi|228597248|gb|EEK54899.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BGSC 6E1]
 gi|228660122|gb|EEL15758.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 95/8201]
 gi|228690496|gb|EEL44279.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-42]
 gi|228812071|gb|EEM58402.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830687|gb|EEM76292.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843048|gb|EEM88130.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|300377491|gb|ADK06395.1| glucose inhibited division protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|325125941|gb|ADY85271.1| Glucose-inhibited division protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 439

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAHYITT 387


>gi|228909657|ref|ZP_04073480.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 200]
 gi|228849946|gb|EEM94777.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 200]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|229013015|ref|ZP_04170180.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides DSM 2048]
 gi|229061435|ref|ZP_04198780.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH603]
 gi|228717858|gb|EEL69506.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH603]
 gi|228748269|gb|EEL98129.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides DSM 2048]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|229157408|ref|ZP_04285486.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 4342]
 gi|228626135|gb|EEK82884.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 4342]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|222097277|ref|YP_002531334.1| tRNA (uracil-5-)-methyltransferase gid [Bacillus cereus Q1]
 gi|254789168|sp|B9IVC1|TRMFO_BACCQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221241335|gb|ACM14045.1| gid protein [Bacillus cereus Q1]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|229031462|ref|ZP_04187462.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1271]
 gi|228729751|gb|EEL80731.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1271]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|229098301|ref|ZP_04229248.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-29]
 gi|229117318|ref|ZP_04246696.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-3]
 gi|228666218|gb|EEL21682.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-3]
 gi|228685199|gb|EEL39130.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-29]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|225865813|ref|YP_002751191.1| tRNA:m(5)U-54 methyltransferase [Bacillus cereus 03BB102]
 gi|228935146|ref|ZP_04097973.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|205830476|sp|A0RHK5|TRMFO_BACAH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789167|sp|C1EP56|TRMFO_BACC3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225789627|gb|ACO29844.1| tRNA:m(5)U-54 methyltransferase [Bacillus cereus 03BB102]
 gi|228824511|gb|EEM70316.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|42782924|ref|NP_980171.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus ATCC 10987]
 gi|217961252|ref|YP_002339820.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus AH187]
 gi|229140474|ref|ZP_04269029.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST26]
 gi|50400232|sp|Q732N8|TRMFO_BACC1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707906|sp|B7HLG5|TRMFO_BACC7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|42738851|gb|AAS42779.1| gid protein [Bacillus cereus ATCC 10987]
 gi|217064533|gb|ACJ78783.1| gid protein [Bacillus cereus AH187]
 gi|228643035|gb|EEK99311.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST26]
 gi|324327729|gb|ADY22989.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 434

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|313123912|ref|YP_004034171.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280475|gb|ADQ61194.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325686015|gb|EGD28074.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 439

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAHYITT 387


>gi|104774159|ref|YP_619139.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123251897|sp|Q1G9V1|TRMFO_LACDA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|103423240|emb|CAI98073.1| Glucose inhibited division protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 439

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAHYITT 387


>gi|229174498|ref|ZP_04302030.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus MM3]
 gi|228609058|gb|EEK66348.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus MM3]
          Length = 434

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|253733511|ref|ZP_04867676.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253728565|gb|EES97294.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 435

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 192/506 (37%), Gaps = 107/506 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITEVLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ +I  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITIINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC- 455
             + F R ++ IG M               + S A+   + +P NA+  L P    L   
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP---SLETR 409

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSL 481
           I +++++  A+  +  ++L +  K+L
Sbjct: 410 IKDKKERYEAQATRALDYLENFKKTL 435


>gi|116514252|ref|YP_813158.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275016|sp|Q04A02|TRMFO_LACDB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116093567|gb|ABJ58720.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 439

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAHYITT 387


>gi|238853069|ref|ZP_04643461.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 202-4]
 gi|238834317|gb|EEQ26562.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 202-4]
          Length = 438

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YI +P+ L    E +K +GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLNANYEARKQAGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GL+AGIN+AR++   + + F ++ + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAAREALGEETLVFPKSTA-LGSMAHYITT 387


>gi|300812248|ref|ZP_07092686.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496762|gb|EFK31846.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 439

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  + E KK  GLF AG
Sbjct: 279 GFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKASYEAKKRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M   +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAHYITT 387


>gi|71903531|ref|YP_280334.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS6180]
 gi|71802626|gb|AAX71979.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS6180]
          Length = 464

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 165/423 (39%), Gaps = 74/423 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AG EAA   AK G    L           HKT+    + C+ +  G       G
Sbjct: 27  VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNAVG 86

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++ R  +A  +          PA  G     DRE Y  ++  E+ +   
Sbjct: 87  LLKEEMRRLDSIIMRNGEANRV----------PA--GGAMAVDREGYAKSVTAELENHPL 134

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++VI+ E+    TE        + D+++   +T  LT+             KI A   GD
Sbjct: 135 IEVIRDEI----TE--------IPDDAITVIATGPLTSDALAE--------KIHALNGGD 174

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT-- 230
                    F  +D     +   T   +D   +     +DK E  + +  +    FM   
Sbjct: 175 G--------FYFYDAAAPIIDKST---IDMSKVYLKSRYDKGEAAYLNCPMTKEEFMAFH 223

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGER 288
           D +TN + E  +     E  +     +    +    IK+  YGP     +E      G R
Sbjct: 224 DALTNAE-EAPLNA--FEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 280

Query: 289 NGH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           +G        + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 281 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 340

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAG N+AR   + + + F
Sbjct: 341 NSYMDSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGTNAARLFKREEALVF 400

Query: 402 SRT 404
            +T
Sbjct: 401 PQT 403


>gi|47097537|ref|ZP_00235074.1| gid protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254828639|ref|ZP_05233326.1| gid protein [Listeria monocytogenes FSL N3-165]
 gi|254898559|ref|ZP_05258483.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           J0161]
 gi|254936277|ref|ZP_05267974.1| gid protein [Listeria monocytogenes F6900]
 gi|47014085|gb|EAL05081.1| gid protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601038|gb|EEW14363.1| gid protein [Listeria monocytogenes FSL N3-165]
 gi|258608866|gb|EEW21474.1| gid protein [Listeria monocytogenes F6900]
          Length = 434

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAHYITS 386


>gi|254829967|ref|ZP_05234622.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           10403S]
 gi|255025704|ref|ZP_05297690.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J2-003]
 gi|284801661|ref|YP_003413526.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5578]
 gi|284994803|ref|YP_003416571.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5923]
 gi|284057223|gb|ADB68164.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5578]
 gi|284060270|gb|ADB71209.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5923]
          Length = 434

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAHYITS 386


>gi|313638167|gb|EFS03423.1| tRNA:M(5)U-54 methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 434

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFSMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKSRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + I F + ++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKELIIFPK-ETAIGSLAHYITS 386


>gi|191638399|ref|YP_001987565.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus casei BL23]
 gi|190712701|emb|CAQ66707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus casei BL23]
 gi|327382428|gb|AEA53904.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus casei LC2W]
 gi|327385627|gb|AEA57101.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus casei BD-II]
          Length = 439

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   LF AG
Sbjct: 277 GFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GL+AG N+AR +     + F  T           T+ G +  Y   
Sbjct: 337 QMTGVEGYVESAASGLIAGTNAARMALGETPLIFPET-----------TAMGSMAHYITH 385

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQK 462
           TS   +    +P NA+  + P + +K+    ER Q+
Sbjct: 386 TSAHHF----QPMNANFGIMPALTVKVRNKKERNQQ 417


>gi|46199379|ref|YP_005046.1| tRNA (uracil-5-)-methyltransferase Gid [Thermus thermophilus HB27]
 gi|81405714|sp|Q72IQ5|TRMFO_THET2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46197004|gb|AAS81419.1| glucose inhibited division protein A [Thermus thermophilus HB27]
          Length = 443

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  TLE ++  GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + G  GY E+AA G +AG+N+AR++  L  +     +S +G ++  L +
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARRALGLPPVA-PPEESMLGGLVRYLAT 384


>gi|227890786|ref|ZP_04008591.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           ATCC 11741]
 gi|227867195|gb|EEJ74616.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           ATCC 11741]
 gi|300214498|gb|ADJ78914.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           (Folate-dependent tRNA (uracil-5-)-methyltransferase)
           (Folate-dependent tRNA(M-5-U54)-methyltransferase)
           [Lactobacillus salivarius CECT 5713]
          Length = 436

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     +ED   R G+     + L  +    D+    G  T L    Q +    IPGL
Sbjct: 241 YGPLKPVGLEDP--RTGKEPFAVVQLRQDNAAGDLYNIVGFQTHLKWGEQKRVFSMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++ +P+ +  T +TKK   LF AGQ+ G  GY E+AA GL AG+N
Sbjct: 299 ENARFVRYGVMHRNTFLCSPEVMQATYQTKKRPDLFFAGQMTGVEGYVESAASGLYAGLN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +AR +   D + F   ++ +G M   +T   V
Sbjct: 359 AARIAQGKDPVIFPE-ETMMGAMAHYITHASV 389


>gi|253731870|ref|ZP_04866035.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724280|gb|EES93009.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|302332857|gb|ADL23050.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|329733546|gb|EGG69874.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 435

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITEVLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|205830455|sp|Q48TI1|TRMFO_STRPM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 165/423 (39%), Gaps = 74/423 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AG EAA   AK G    L           HKT+    + C+ +  G       G
Sbjct: 11  VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNAVG 70

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ +   
Sbjct: 71  LLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENHPL 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++VI+ E+    TE        + D+++   +T  LT+             KI A   GD
Sbjct: 119 IEVIRDEI----TE--------IPDDAITVIATGPLTSDALAE--------KIHALNGGD 158

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT-- 230
                    F  +D     +   T   +D   +     +DK E  + +  +    FM   
Sbjct: 159 G--------FYFYDAAAPIIDKST---IDMSKVYLKSRYDKGEAAYLNCPMTKEEFMAFH 207

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGER 288
           D +TN + E  +     E  +     +    +    IK+  YGP     +E      G R
Sbjct: 208 DALTNAE-EAPLNA--FEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 264

Query: 289 NGH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           +G        + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 265 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 324

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAG N+AR   + + + F
Sbjct: 325 NSYMDSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGTNAARLFKREEALVF 384

Query: 402 SRT 404
            +T
Sbjct: 385 PQT 387


>gi|226313078|ref|YP_002772972.1| tRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|254789169|sp|C0ZFA9|TRMFO_BREBN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226096026|dbj|BAH44468.1| tRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
          Length = 437

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN PK L PT + K    LF AG
Sbjct: 279 GFQTHLKWPDQKRVFSLIPGLENCEIVRYGVMHRNTFINSPKLLKPTYQYKDRETLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AGIN+AR
Sbjct: 339 QMTGVEGYVESAASGLLAGINAAR 362


>gi|254852670|ref|ZP_05242018.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-503]
 gi|300765312|ref|ZP_07075296.1| gid protein [Listeria monocytogenes FSL N1-017]
 gi|258605988|gb|EEW18596.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-503]
 gi|300513995|gb|EFK41058.1| gid protein [Listeria monocytogenes FSL N1-017]
          Length = 434

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-TETAIGSLAHYITS 386


>gi|238603528|ref|XP_002395973.1| hypothetical protein MPER_03877 [Moniliophthora perniciosa FA553]
 gi|215467627|gb|EEB96903.1| hypothetical protein MPER_03877 [Moniliophthora perniciosa FA553]
          Length = 95

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           K PAGR+ ++PS  L  S     F  GRL+TGTPARLDGKTI +    KQ  D+  IPFS
Sbjct: 12  KFPAGRINEAPSIGLSASLQAAGFKLGRLQTGTPARLDGKTINFTNLTKQVGDKEPIPFS 71

Query: 228 FMTDKITNRQ 237
           F+     NRQ
Sbjct: 72  FL-----NRQ 76


>gi|293596526|ref|ZP_06684243.1| gid protein [Listeria monocytogenes J2818]
 gi|293589912|gb|EFF98246.1| gid protein [Listeria monocytogenes J2818]
          Length = 363

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 207 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 266

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 267 QMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAHYITS 315


>gi|171779421|ref|ZP_02920385.1| hypothetical protein STRINF_01266 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282038|gb|EDT47469.1| hypothetical protein STRINF_01266 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 445

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T  T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFATRQNPNLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +   +T
Sbjct: 349 QMTGVEGYVESAASGLVAGINAVRRFKGEEPVIFPQTTA-IGALPHYIT 396


>gi|15673213|ref|NP_267387.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis Il1403]
 gi|26006775|sp|Q9CG79|TRMFO_LACLA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|12724202|gb|AAK05329.1|AE006355_4 glucose inhibited division protein GidC [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326406771|gb|ADZ63842.1| uracil-5-tRNA-methyltransferase Gid [Lactococcus lactis subsp.
           lactis CV56]
          Length = 447

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ +  N  + + F +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVKLFNDEEVVIFPKT 384


>gi|330685680|gb|EGG97321.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU121]
          Length = 435

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 177/463 (38%), Gaps = 85/463 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV----------PA--GGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  EV        II+             T  LTT    + ++ I GK ++    
Sbjct: 113 PNVTVLNQEVHSIPEGYTIIA-------------TGPLTTENLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  + +  S  +   ++K  +D G          +   +    TE++F           
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF----------- 198

Query: 230 TDKITNRQIECGITRTN-LETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFG 286
            D+  N  +E  +   N  E  +     +    +     K+  +GP     +ED   + G
Sbjct: 199 -DRFYNAVLEAEVAPVNEFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDP--KTG 255

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G      +I
Sbjct: 256 KRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFI 315

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P  L    E      ++ AGQ+ G  GY E+AA GLV+GIN A K      + F R +
Sbjct: 316 NSPDVLNEKYELIGHENIYFAGQMTGVEGYVESAASGLVSGINLAHKLLDKGEVIFPR-E 374

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           + IG M               + S A+   + +P NA+  L P
Sbjct: 375 TMIGSMA-------------YYISHAKNEKNFQPMNANFGLLP 404


>gi|320546745|ref|ZP_08041056.1| tRNA:M(5)U-54 methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320448624|gb|EFW89356.1| tRNA:M(5)U-54 methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 445

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      Y++ P  L  T  T++   LF AG
Sbjct: 289 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFATRQNPNLFFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +   +T
Sbjct: 349 QMTGVEGYVESAASGLVAGINAVRRFKGEEPVIFPQTTA-IGALPHYIT 396


>gi|281491736|ref|YP_003353716.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375450|gb|ADA64960.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis KF147]
          Length = 447

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ +  N  + + F +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVKLFNDEEVVIFPKT 384


>gi|218295704|ref|ZP_03496500.1| gid protein [Thermus aquaticus Y51MC23]
 gi|218243863|gb|EED10390.1| gid protein [Thermus aquaticus Y51MC23]
          Length = 444

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  TL+ K+  GLF AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLRETLDFKEAEGLFAAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
            + G  GY E+AA G +AG+N+AR+   L+ +      S +G ++  L            
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARRVLGLEPLVPPEA-SMLGGLVRFLA----------- 383

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           T+  E   + +P NA+  L P     G   E+RQ  + + ++ +    S LK  +  +++
Sbjct: 384 TANPE---NFQPMNANWGLVPPVEGRGK-KEKRQAMYRRGLEAFAQWLSALKPPLPGARS 439

Query: 488 LS 489
           L 
Sbjct: 440 LQ 441



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+GGG AG EAA    ++G    L           H T     + C+ ++GG G    
Sbjct: 4   VNVVGGGLAGSEAAWTLLRMGVPVRLFEMRPKRMTPAHATDRFAEIVCSNSLGGEGETQA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+  L  L+   A+AA +          PA  G     DRE++   +   + + 
Sbjct: 64  KGLLQAEMRLLGSLVMEAAEAARV----------PA--GGALAVDREVFSGFITERLQAH 111

Query: 115 ENLDVIQGEV 124
             L+V++ EV
Sbjct: 112 PLLEVVREEV 121


>gi|294500947|ref|YP_003564647.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium QM B1551]
 gi|294350884|gb|ADE71213.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium QM B1551]
          Length = 434

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE   ++R G      +IN PK L PT + ++   LF AG
Sbjct: 279 GFQTHLKWGAQKEVLSLIPGLENAEVVRYGVMHRNTFINSPKLLKPTYQYRERDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AG+N+AR
Sbjct: 339 QMTGVEGYVESAASGLMAGMNAAR 362


>gi|323701840|ref|ZP_08113510.1| gid protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533144|gb|EGB23013.1| gid protein [Desulfotomaculum nigrificans DSM 574]
          Length = 443

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPG+     +R G      YIN P  L PTL+ K    +FLAG
Sbjct: 280 GFQTNLKWGEQKRVFSLIPGMANAEFVRYGVMHRNTYINSPTLLKPTLQLKSQERIFLAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA GLVAGIN+AR +     + F    ++ G ++  +TS
Sbjct: 340 QITGVEGYVESAAAGLVAGINAARMAKGQAPVEFPPETAH-GALLHYITS 388


>gi|169837932|ref|ZP_02871120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 99

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVL TGTFLRG+++IG  ++  GRMG+  ++ L +S        GR KTGTP RLD +T+
Sbjct: 4   VVLATGTFLRGLLYIGDKRVKGGRMGELSADDLTSSLKSLGLKMGRFKTGTPPRLDIRTL 63

Query: 210 IWDKTEKQ 217
             +K E+Q
Sbjct: 64  NLEKLEEQ 71


>gi|295706293|ref|YP_003599368.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium DSM 319]
 gi|294803952|gb|ADF41018.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium DSM 319]
          Length = 434

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE   ++R G      +IN PK L PT + ++   LF AG
Sbjct: 279 GFQTHLKWGAQKEVLSLIPGLENAEVVRYGVMHRNTFINSPKLLKPTYQYRERDDLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AG+N+AR
Sbjct: 339 QMTGVEGYVESAASGLMAGMNAAR 362


>gi|255018080|ref|ZP_05290206.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           F2-515]
          Length = 320

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 189 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 248

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 249 QMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAHYITS 297


>gi|16803316|ref|NP_464801.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           EGD-e]
 gi|224499053|ref|ZP_03667402.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           Finland 1988]
 gi|224501779|ref|ZP_03670086.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-561]
 gi|26006765|sp|Q8Y7K1|TRMFO_LISMO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|16410692|emb|CAC99354.1| gid [Listeria monocytogenes EGD-e]
          Length = 434

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFIQEKELVVFP-TETAIGSLAHYITS 386


>gi|258404544|ref|YP_003197286.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfohalobium retbaense
           DSM 5692]
 gi|257796771|gb|ACV67708.1| gid protein [Desulfohalobium retbaense DSM 5692]
          Length = 449

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           +YGP     +ED       R G Q F    L PE     +    G  T L    Q +  R
Sbjct: 251 AYGPLKPVGLEDP------RTGKQAFAVVQLRPENAAKTMCNLVGFQTKLTYPEQKRVFR 304

Query: 325 TIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            IPGLE+   +R G      ++N P+ L P LE + + G++LAGQI G  GY E+AA G 
Sbjct: 305 MIPGLEQAEFVRMGSIHRNTFVNAPRVLLPHLELRDMPGVYLAGQITGVEGYVESAASGF 364

Query: 384 VAG 386
             G
Sbjct: 365 WLG 367


>gi|77415236|ref|ZP_00791226.1| glucose-inhibited division protein A [Streptococcus agalactiae 515]
 gi|77158714|gb|EAO70035.1| glucose-inhibited division protein A [Streptococcus agalactiae 515]
          Length = 120

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 4/102 (3%)

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
           N      +VV+TTGT LRG I +G LK  +G      S +L ++      + GR KTGTP
Sbjct: 20  NQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTLADNLRDLGLEIGRFKTGTP 79

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIEC 240
            R+   +I ++KTE Q  DE+   FSFM+   D IT+ Q+ C
Sbjct: 80  PRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITD-QVPC 120


>gi|223932160|ref|ZP_03624164.1| gid protein [Streptococcus suis 89/1591]
 gi|302023781|ref|ZP_07248992.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 05HAS68]
 gi|330832814|ref|YP_004401639.1| gid protein [Streptococcus suis ST3]
 gi|223899141|gb|EEF65498.1| gid protein [Streptococcus suis 89/1591]
 gi|329307037|gb|AEB81453.1| gid protein [Streptococcus suis ST3]
          Length = 444

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  TKK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFATKKNPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GLVAGIN+ R+    + + F +T + IG +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRRFRGEEPVIFPQTTA-IGAL 390



 Score = 37.4 bits (85), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 25/128 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AG EAA   AK G    L           HKT     + C+ +  G       G
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSFRGDSLTNAVG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++ R  +A  +          PA  G     DRE +  A+  EI +   
Sbjct: 68  LLKEEMRRLDSIIMRAGEAHRV----------PA--GGAMAMDRENFSQAVTDEIHNHPL 115

Query: 117 LDVIQGEV 124
           ++VI+GE+
Sbjct: 116 IEVIRGEI 123


>gi|125624095|ref|YP_001032578.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166989561|sp|A2RKQ0|TRMFO_LACLM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|124492903|emb|CAL97864.1| GidC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070868|gb|ADJ60268.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 448

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           Q+ G  GY E+AA GLVAGIN+A+  N  + + F +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAKLFNDEEVVIFPK 383


>gi|205830465|sp|Q1JGS2|TRMFO_STRPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++++   LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRRNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|94990516|ref|YP_598616.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10270]
 gi|94544024|gb|ABF34072.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10270]
          Length = 464

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++++   LF AG
Sbjct: 307 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRRNPNLFFAG 366

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 367 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 403


>gi|289434560|ref|YP_003464432.1| glucose inhibited division gid protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170804|emb|CBH27346.1| glucose inhibited division gid protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 434

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKSRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + I F + ++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKELIIFPK-ETAIGSLAHYITS 386


>gi|58337279|ref|YP_193864.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           NCFM]
 gi|227903865|ref|ZP_04021670.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           ATCC 4796]
 gi|81170598|sp|Q5FKE1|TRMFO_LACAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|58254596|gb|AAV42833.1| glucose-inhibited division protein [Lactobacillus acidophilus NCFM]
 gi|227868256|gb|EEJ75677.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           ATCC 4796]
          Length = 438

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 18/157 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E K   GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPNVLTASYEAKNRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+A  GLVAGIN+AR++   + + F + ++ +G M + +T           
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGKETVAFPK-NTALGSMANYVT----------- 386

Query: 428 TSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQK 462
           T+ A++    +P NA   L P   G K+    ER +K
Sbjct: 387 TTSAKH---FQPMNASFALLPALEGKKIRKKRERHEK 420


>gi|301300761|ref|ZP_07206945.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851611|gb|EFK79311.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 436

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     +ED   R G+     + L  +    D+    G  T L    Q +    IPGL
Sbjct: 241 YGPLKPVGLEDP--RTGKEPFAVVQLRQDNAAGDLYNIVGFQTHLKWGEQKRVFSMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++ +P+ +  T +TKK   LF AGQ+ G  GY E+AA GL AG+N
Sbjct: 299 ENARFVRYGVMHRNTFLCSPEVMQATYQTKKRLDLFFAGQMTGVEGYVESAASGLYAGLN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +AR +   D + F   ++ +G M   +T   V
Sbjct: 359 AARIAQGKDPVIFPE-ETMMGAMAHYITHASV 389


>gi|90961698|ref|YP_535614.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           UCC118]
 gi|122449073|sp|Q1WU04|TRMFO_LACS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|90820892|gb|ABD99531.1| Glucose inhibited division protein A [Lactobacillus salivarius
           UCC118]
          Length = 436

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     +ED   R G+     + L  +    D+    G  T L    Q +    IPGL
Sbjct: 241 YGPLKPVGLEDP--RTGKEPFAVVQLRQDNAAGDLYNIVGFQTHLKWGEQKRVFSMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      ++ +P+ +  T +TKK   LF AGQ+ G  GY E+AA GL AG+N
Sbjct: 299 ENARFVRYGVMHRNTFLCSPEVMQATYQTKKRLDLFFAGQMTGVEGYVESAASGLYAGLN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +AR +   D + F   ++ +G M   +T   V
Sbjct: 359 AARIAQGKDPVIFPE-ETMMGAMAHYITHASV 389


>gi|327183489|gb|AEA31936.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1118]
          Length = 438

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E +   GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAQNRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGEETVAFPK-DTALGSMANYITT 387


>gi|315038212|ref|YP_004031780.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1112]
 gi|325956666|ref|YP_004292078.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           30SC]
 gi|312276345|gb|ADQ58985.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1112]
 gi|325333231|gb|ADZ07139.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           30SC]
          Length = 438

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      Y+ +P  L  + E +   GLF AG
Sbjct: 279 GFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLTASYEAQNRPGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M + +T+
Sbjct: 339 QMTGVEGYVESAGSGLVAGINAAREALGEETVAFPK-DTALGSMANYITT 387


>gi|116872709|ref|YP_849490.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123458432|sp|A0AI79|TRMFO_LISW6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116741587|emb|CAK20711.1| glucose inhibited division protein A [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 434

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K    LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRDDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + I F   +S IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQEKETIVFP-AESAIGSLAHYITS 386


>gi|49483414|ref|YP_040638.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282903806|ref|ZP_06311694.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905569|ref|ZP_06313424.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908544|ref|ZP_06316374.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283957994|ref|ZP_06375445.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427738|ref|ZP_06820370.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591304|ref|ZP_06949942.1| (FADH(2)-oxidizing) [Staphylococcus aureus subsp. aureus MN8]
 gi|81170601|sp|Q6GHI4|TRMFO_STAAR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49241543|emb|CAG40229.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327606|gb|EFB57889.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330861|gb|EFB60375.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595424|gb|EFC00388.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790143|gb|EFC28960.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128096|gb|EFG57730.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576190|gb|EFH94906.1| (FADH(2)-oxidizing) [Staphylococcus aureus subsp. aureus MN8]
          Length = 435

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 175/472 (37%), Gaps = 103/472 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   ++ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLSERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +          PA  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV----------PA--GGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
           EN+ VI  E+        II+             T  LTT T  + ++ I GK ++    
Sbjct: 113 ENITVINEEINAIPDGYTIIA-------------TGPLTTETLAQEIVDITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 160 AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEAAPVNSFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 249 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             + F R ++ IG M               + S A+   + +P NA+  L P
Sbjct: 367 GEVVFPR-ETMIGSMA-------------YYISHAKNNKNFQPMNANFGLLP 404


>gi|328946305|gb|EGG40449.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1087]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|322389588|ref|ZP_08063137.1| tRNA:M(5)U-54 methyltransferase [Streptococcus parasanguinis ATCC
           903]
 gi|321143714|gb|EFX39143.1| tRNA:M(5)U-54 methyltransferase [Streptococcus parasanguinis ATCC
           903]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK + LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQANLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR     +   F  T S IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEAAIFPETTS-IGSLAHYIT 395


>gi|282850255|ref|ZP_06259634.1| tRNA:M(5)U-54 methyltransferase [Veillonella parvula ATCC 17745]
 gi|282579748|gb|EFB85152.1| tRNA:M(5)U-54 methyltransferase [Veillonella parvula ATCC 17745]
          Length = 438

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 156/423 (36%), Gaps = 72/423 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIHVDLYEMRPLKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++   ADA  +          PA  G     DR L+   + +++ S
Sbjct: 65  AVGLLKEEMRRLGSIIMECADATAV----------PA--GGALAVDRHLFSEMVTKKVKS 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV    TE                  TV+  +G      +    +K+  G 
Sbjct: 113 HPNITVHHEEVTEIPTE-----------------GTVIFASGPLTSEALG-DNIKVLTGE 154

Query: 174 MG----DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            G    D+ +  +    + +D  F   R   G     D   +    TE+++        +
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEYK-------A 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVR 284
           F  +  T   ++      + E   I  E      I +    D   YGP     + DK  R
Sbjct: 203 FWNELTTAEAVQP----KDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--R 255

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             E +   + L  E     +    G  T L    Q +    IPGLE    +R G      
Sbjct: 256 TNEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNT 315

Query: 345 YINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN  EL     + KK   LF AGQ+ G  GY E+AA GL+ G+  AR   +   I F +
Sbjct: 316 YINSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVARYLEEKPFIEFPK 375

Query: 404 TDS 406
           T +
Sbjct: 376 TTA 378


>gi|325689701|gb|EGD31705.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK115]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|324991150|gb|EGC23084.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK353]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 161/422 (38%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKT+    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDREGFSQMVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG      +     KI A   GD 
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDAL---AEKIHALNGGDG 156

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                   F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 157 --------FYFYDAAAPIVDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF +GQ+ G  GY E+AA GLVAGIN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFSGQMTGVEGYVESAASGLVAGINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|332361199|gb|EGJ39003.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1056]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|327470032|gb|EGF15496.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK330]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|323351567|ref|ZP_08087221.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis VMC66]
 gi|322122053|gb|EFX93779.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis VMC66]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|72382474|ref|YP_291829.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. NATL2A]
 gi|123621049|sp|Q46K52|TRMFO_PROMT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|72002324|gb|AAZ58126.1| Gid protein [Prochlorococcus marinus str. NATL2A]
          Length = 467

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 25/205 (12%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           + PR+   + DK +R  +R    + L  E     +    G  T L    Q +  R IPGL
Sbjct: 256 WDPRWG-DVNDKSIRRLKRAHAVVQLRQEDKAGKLWNLVGFQTNLKWGEQKRIFRMIPGL 314

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            K   IR G      +I +PK + PTL+      LF AGQ+ GT GY  A A G +AG N
Sbjct: 315 SKAEFIRFGVMHRNTFIESPKLIEPTLQFTNRKTLFAAGQLTGTEGYAAAVAGGWLAGTN 374

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +A  +  LD I    +      MI  LT+         F S ++   SLR  N  N   P
Sbjct: 375 AALLAKGLDTITLPSS-----TMIGALTN---------FVSNSQ--ASLRVKNKKN-FQP 417

Query: 449 IGMKLGCIGE------RRQKRFAKY 467
           +    G + E       +++R+ +Y
Sbjct: 418 MPANFGILPELDIRVHNKRERYKEY 442


>gi|83319822|ref|YP_424450.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|123535705|sp|Q2SS13|TMFO1_MYCCT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|83283708|gb|ABC01640.1| glucose inhibited division protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 438

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 163/409 (39%), Gaps = 84/409 (20%)

Query: 8   VIVIGGGHAGCEAAAVAA------KLGASTALI---THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AGCEAA   A      +L     LI     KT+    + C+           
Sbjct: 5   VKIIGAGLAGCEAAYFLANNDIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRSQSLLNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+ ++AD+  I              G           LA+ RE  S+
Sbjct: 65  AGILKAEMRRLNSLVIKIADSCKID-------------GDDA--------LAVDREDFSK 103

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGR 173
           +  DVI+        E+N+  S +  +N +   +T  LTT      +   IGK K+    
Sbjct: 104 KLTDVIKNHPNITIIEQNV--SYIDDENDLTLIATGPLTTNELKEDIQRLIGKQKL---F 158

Query: 174 MGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
             D+ +  +    + F+  + +GR K        GK I     E++F         F+ D
Sbjct: 159 FMDASAPIITKDSIDFNKVYYSGRHK-------QGKYICCPLNEQEFN-------KFVDD 204

Query: 232 KITNRQIECGITRTNLETHRIIM----ENIKHSAIYSGDIKSYGPRYCPSIEDK------ 281
            +   Q++        E  + I     + I+  A  S  +   GP    ++ D+      
Sbjct: 205 LVNAEQVQLK------EFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSPNNLLDQNNQQPY 258

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            +V+  + +         G  T++ +P           Q +  +TIPGLEK  I+R G  
Sbjct: 259 AVVQLRQDDAKDSLYNMVGFQTNLKWPE----------QKRVFQTIPGLEKAKIVRYGVM 308

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            +  YIN PK L   L+  +   +F AGQI G  GY E+A+ G+ A IN
Sbjct: 309 HKNYYINSPKILNFKLQVIRKKNVFFAGQITGVEGYIESASSGIWAAIN 357


>gi|228475054|ref|ZP_04059782.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis SK119]
 gi|228271039|gb|EEK12427.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis SK119]
          Length = 435

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 193/499 (38%), Gaps = 87/499 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL-- 53
           S  V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G   
Sbjct: 2   SQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNAL 61

Query: 54  --GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
             G G L  E+  LD L+   AD A +          PA  G     DR  +   +   +
Sbjct: 62  TNGVGVLKEEMRRLDSLIIAAADKARV----------PA--GGALAVDRHDFAGYITDTL 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI- 169
            +  N+ V+  E+        II+             T  LTT    + ++ I GK ++ 
Sbjct: 110 KNHPNVTVLNKEIHSIPEGHTIIA-------------TGPLTTENLAKEIVEITGKDQLY 156

Query: 170 ---PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + +  S  +   ++K  +D G          +   +    TE++F        
Sbjct: 157 FYDAAAPIIEKDSIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF-------- 198

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS---YGPRYCPSIEDKIV 283
               ++  +  +E  +   N        E      + +G  +    +GP     +ED   
Sbjct: 199 ----NRFYDAVLEAEVAPVNEFEKEKYFEGCMPFEVMAGRGRKTLLFGPMKPVGLEDP-- 252

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G     
Sbjct: 253 KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVDIVRYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F 
Sbjct: 313 TFINSPDVLNEKYELINNDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLGKGEVIFP 372

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R ++ IG M               + S A+   + +P NA+  L P   +   I +++++
Sbjct: 373 R-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLPSLDRR--IKDKKER 416

Query: 463 RFAKYIQEYNFLRSLLKSL 481
             A+  +  ++L +  K+L
Sbjct: 417 YEAQAYRALDYLENFKKTL 435


>gi|332360882|gb|EGJ38688.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK49]
          Length = 444

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEALVFPET 384


>gi|113953825|ref|YP_730348.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9311]
 gi|123327861|sp|Q0IB24|TRMFO_SYNS3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|113881176|gb|ABI46134.1| gid protein [Synechococcus sp. CC9311]
          Length = 459

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 253 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLI 311

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE+ + +R G      ++   EL  PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 312 PGLEQADFVRFGVMHRNTFLEAPELLEPTLQFRRRPHLLAAGQITGTEGYAAAVAGGWLA 371

Query: 386 GINSARKSNKLDCICFSRTDSYIGVM 411
           G N+AR  +  D +    T + IG +
Sbjct: 372 GTNAARLVHGHDPMQLPHT-TMIGAL 396


>gi|94988640|ref|YP_596741.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS9429]
 gi|94992463|ref|YP_600562.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS2096]
 gi|94542148|gb|ABF32197.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS9429]
 gi|94545971|gb|ABF36018.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS2096]
          Length = 502

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 345 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRNNPNLFFAG 404

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 405 QMTGVEGYVESAASGLVAGINAARLFKREEALVFPQT 441


>gi|251782411|ref|YP_002996713.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391040|dbj|BAH81499.1| glucose inhibited division protein A [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 464

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 307 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 366

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 367 QMTGVEGYVESAASGLVAGINAARLFKREEALVFPQT 403


>gi|151399991|gb|ABS11108.1| GidA [Vibrio cholerae]
 gi|151399994|gb|ABS11110.1| GidA [Vibrio cholerae]
 gi|151399996|gb|ABS11111.1| GidA [Vibrio cholerae]
 gi|151399999|gb|ABS11113.1| GidA [Vibrio cholerae]
 gi|151400002|gb|ABS11115.1| GidA [Vibrio cholerae]
 gi|151400005|gb|ABS11117.1| GidA [Vibrio cholerae]
 gi|151400008|gb|ABS11119.1| GidA [Vibrio mimicus]
          Length = 54

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+
Sbjct: 2  LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGI 54


>gi|320450937|ref|YP_004203033.1| tRNA:M(5)U-54 methyltransferase [Thermus scotoductus SA-01]
 gi|320151106|gb|ADW22484.1| tRNA:M(5)U-54 methyltransferase [Thermus scotoductus SA-01]
          Length = 437

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      Y+N P  L  TLE ++  GLF AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPLLLQETLEFREQEGLFAAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + G  GY E+AA G +AG+N+AR+   L  +     +S +G ++  L +
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARRYQGLKPVA-PPEESMLGGLVRFLAT 384


>gi|218438815|ref|YP_002377144.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 7424]
 gi|218171543|gb|ACK70276.1| gid protein [Cyanothece sp. PCC 7424]
          Length = 446

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      +IN P+ L+P+L+ K    LF AG
Sbjct: 282 GFQTNLKWGEQKRVFRLIPGLEEAEFVRMGVMHRNTFINSPQLLYPSLQFKSRPTLFAAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  A A G +AG N+AR    LD +    T + +G + + ++S
Sbjct: 342 QLVGTEGYTAATAGGWLAGTNAARLVLGLDLVTIPVT-TMMGSLFEFISS 390


>gi|323127293|gb|ADX24590.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 448

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRNNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T +
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALVFPQTTA 389


>gi|332366889|gb|EGJ44630.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1059]
          Length = 456

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 300 GFQTHLKWGDQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTFRSKKQPNLFFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T
Sbjct: 360 QMTGVEGYVESAASGLVAGINAARLFKGEEALIFPET 396


>gi|205830461|sp|Q1JBP0|TRMFO_STRPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830464|sp|Q1JLM2|TRMFO_STRPC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRNNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALVFPQT 387


>gi|118578966|ref|YP_900216.1| tRNA (uracil-5-)-methyltransferase Gid [Pelobacter propionicus DSM
           2379]
 gi|205830314|sp|A1ALD8|TRMFO_PELPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|118501676|gb|ABK98158.1| gid protein [Pelobacter propionicus DSM 2379]
          Length = 454

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE+   +R G      +IN P  L PT + +    +F AG
Sbjct: 279 GFQTKLTWPEQRRIFRTIPGLERAEFVRLGSMHRNTFINAPALLQPTQQLRSDPRIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           QI G  GY E+A  G +AGI +AR    +        ++ +G ++  +T+  V
Sbjct: 339 QITGVEGYVESAGSGFLAGITAARLLTGMPDPAVPPAETALGALVSHITNADV 391


>gi|16800383|ref|NP_470651.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria innocua Clip11262]
 gi|26006768|sp|Q92C76|TRMFO_LISIN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|16413788|emb|CAC96546.1| gid [Listeria innocua Clip11262]
          Length = 434

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A      + I F   +S IG + + +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQDKEPIVFP-PESAIGSLANYITS 386


>gi|331703493|ref|YP_004400180.1| methylene tetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802048|emb|CBW54202.1| Methylene tetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 438

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 158/406 (38%), Gaps = 78/406 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AGCEAA   A       L            KT+    + C+           
Sbjct: 5   VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRSQSLLNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+ ++AD+  I              G           LA+ RE  S+
Sbjct: 65  AGILKAEMRRLNSLVIKIADSCKID-------------GDDA--------LAVDREDFSK 103

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGR 173
           +  DVI+        EKN+  S +  +N +   +T  LTT      +   IGK K+    
Sbjct: 104 KLTDVIKNHPNITIIEKNV--SHIDDENDLTLIATGPLTTNELKEDIQRLIGKQKL---F 158

Query: 174 MGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
             D+ +  +    + F+  + +GR K        GK I     E++F         F  +
Sbjct: 159 FMDASAPIITKDSIDFNKVYYSGRHK-------QGKYICCPLNEQEFN-------KFADN 204

Query: 232 KITNRQIECGITRTNLETHRIIM----ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
            I   Q++        E  + I     + I+  A  S  +   GP    ++ D       
Sbjct: 205 LINAEQVQLK------EFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSSNNLLD------- 251

Query: 288 RNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           +N HQ +    L  +     +    G  T L    Q +  +TIPGL+K  I+R G   + 
Sbjct: 252 QNNHQPYAVVQLRQDDAKDSLYNMVGFQTNLKWPEQKRVFQTIPGLQKAKIVRYGVMHKN 311

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            YIN PK L   L+  +   +F AGQI G  GY E+A+ G+ A IN
Sbjct: 312 YYINSPKILNFKLQVMRKKNVFFAGQITGVEGYIESASSGIWAAIN 357


>gi|169839320|ref|ZP_02872508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 57

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           QG++AGIN+A K    +     R  SYIG MIDDL +K + EPYRMFT+R+E+R+
Sbjct: 1   QGIIAGINAALKIKGEEPFILDRESSYIGTMIDDLINKELFEPYRMFTARSEFRL 55


>gi|254994488|ref|ZP_05276678.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J2-064]
          Length = 252

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 96  GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 155

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 156 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-AETAIGSLAHYITS 204


>gi|306827332|ref|ZP_07460619.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304430479|gb|EFM33501.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 494

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 337 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 396

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T +
Sbjct: 397 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTTA 435


>gi|313619214|gb|EFR90978.1| tRNA:M(5)U-54 methyltransferase [Listeria innocua FSL S4-378]
          Length = 428

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A      + I F   +S IG + + +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQDKEPIVFP-PESAIGSLANYITS 386


>gi|94994438|ref|YP_602536.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10750]
 gi|94547946|gb|ABF37992.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10750]
          Length = 464

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 307 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 366

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 367 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 403


>gi|313623982|gb|EFR94081.1| tRNA:M(5)U-54 methyltransferase [Listeria innocua FSL J1-023]
          Length = 434

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A      + I F   +S IG + + +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVQDKEPIVFP-PESAIGSLANYITS 386


>gi|242279775|ref|YP_002991904.1| gid protein [Desulfovibrio salexigens DSM 2638]
 gi|242122669|gb|ACS80365.1| gid protein [Desulfovibrio salexigens DSM 2638]
          Length = 440

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 158/426 (37%), Gaps = 93/426 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGLGK- 55
           + VIGGG AGCE A   AK      L           H    +  + C+ ++  G L   
Sbjct: 4   IAVIGGGLAGCECAMQLAKAEIQVVLYEMKPDKYSEAHHLPGLAELVCSNSLRSGELNTA 63

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E++ALD ++ + A  A +          PA  G     DRE++   +  EI   
Sbjct: 64  IGVLKKEMEALDSVLMKAAMKARV----------PA--GSALAVDREVFSKLVTEEIEQN 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL-RGVIHIGKLKIPAGR 173
           E + V++ E+  F+            D  ++  S +V+  G     G+      KI   R
Sbjct: 112 EFITVVRKEITSFD------------DPELVDFSKIVVCAGPLASEGLTESLMSKIGEQR 159

Query: 174 M----GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--------E 221
           +      +P  S  +  M   F   R K       D   +    TE+Q+          E
Sbjct: 160 LYFYDAIAPIVSRDSVNMDVAFFGSRYKPE-----DDDYLNCPMTEEQYNSFIKELKEGE 214

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC-----P 276
           R++P  F                   E H      I+  A       ++GP        P
Sbjct: 215 RVVPREF-----------------EKEIHFEGCLPIEEMADRGDMTLAFGPLKPVGLIDP 257

Query: 277 SIEDK---IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
             E++   +V+    N  +      G  T + YP           Q +  R IPGLE V 
Sbjct: 258 RTEEQAYAVVQLRAENKDKTAFNLVGFQTKLKYPE----------QKRIFRMIPGLEDVE 307

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG--INSA 390
            +R G      Y+N P+ L   L  K  S + LAGQI G  GY E+AA GL  G  +   
Sbjct: 308 FLRMGSIHRNTYVNAPEVLDEKLALKADSRIHLAGQITGVEGYLESAACGLWVGRMLAEQ 367

Query: 391 RKSNKL 396
            K N+L
Sbjct: 368 AKGNEL 373


>gi|56807499|ref|ZP_00365436.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pyogenes M49 591]
          Length = 317

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 160 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 219

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 220 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 256


>gi|139473747|ref|YP_001128463.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes str.
           Manfredo]
 gi|166989569|sp|A2REF7|TRMFO_STRPG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|134271994|emb|CAM30232.1| protein Gid homolog [Streptococcus pyogenes str. Manfredo]
          Length = 448

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|19746111|ref|NP_607247.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS8232]
 gi|26006762|sp|Q8P106|TRMFO_STRP8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|19748285|gb|AAL97746.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           MGAS8232]
          Length = 448

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|314936588|ref|ZP_07843935.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655207|gb|EFS18952.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 435

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 193/499 (38%), Gaps = 87/499 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL-- 53
           S  V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G   
Sbjct: 2   SQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNAL 61

Query: 54  --GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
             G G L  E+  LD L+   AD A +          PA  G     DR  +   +   +
Sbjct: 62  TNGVGVLKEEMRRLDSLIIAAADKARV----------PA--GGALAVDRHDFAGYITDTL 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI- 169
            +  N+ V+  E+        II+             T  LTT    + ++ I GK ++ 
Sbjct: 110 KNHPNVTVLNKEIHSIPEGHTIIA-------------TGPLTTEHLAKEIVEITGKDQLY 156

Query: 170 ---PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + +  S  +   ++K  +D G          +   +    TE++F        
Sbjct: 157 FYDAAAPIIEKDSIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF-------- 198

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS---YGPRYCPSIEDKIV 283
               ++  +  +E  +   N        E      + +G  +    +GP     +ED   
Sbjct: 199 ----NRFYDAVLEAEVAPVNEFEKEKYFEGCMPFEVMAGRGRKTLLFGPMKPVGLEDP-- 252

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G     
Sbjct: 253 KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVDIVRYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F 
Sbjct: 313 TFINSPDVLNEKYELINNDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLGKGEVIFP 372

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R ++ IG M               + S A+   + +P NA+  L P   +   I +++++
Sbjct: 373 R-ETMIGSMA-------------YYISHAKNEKNFQPMNANFGLLPSLDRR--IKDKKER 416

Query: 463 RFAKYIQEYNFLRSLLKSL 481
             A+  +  ++L +  K+L
Sbjct: 417 YEAQAYRALDYLENFKKTL 435


>gi|209559451|ref|YP_002285923.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           NZ131]
 gi|209540652|gb|ACI61228.1| Gid-like Protein [Streptococcus pyogenes NZ131]
          Length = 448

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|169350426|ref|ZP_02867364.1| hypothetical protein CLOSPI_01194 [Clostridium spiroforme DSM 1552]
 gi|169292746|gb|EDS74879.1| hypothetical protein CLOSPI_01194 [Clostridium spiroforme DSM 1552]
          Length = 434

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  + +R G      +I +PK L  T + K  + +F+AG
Sbjct: 276 GFQTHLTWPEQKRIIHMIPGLENASFVRYGVMHRNSFICSPKYLLNTYQLKLANNIFMAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT--SKGVLEPYR 425
           QI G  GY E+A  G+VAGIN AR     + + F + ++ +G + + +T  SK   +P +
Sbjct: 336 QITGVEGYVESAQSGIVAGINMARLLEGKELLVFPK-ETVMGALANYITNASKDDFQPMK 394


>gi|205830466|sp|Q1J6J1|TRMFO_STRPF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|116627729|ref|YP_820348.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           LMD-9]
 gi|122267674|sp|Q03KX0|TRMFO_STRTD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116101006|gb|ABJ66152.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Streptococcus thermophilus LMD-9]
 gi|312278277|gb|ADQ62934.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus thermophilus ND03]
          Length = 447

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     D + F  T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHT 387


>gi|55822863|ref|YP_141304.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           CNRZ1066]
 gi|81170605|sp|Q5M014|TRMFO_STRT1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|55738848|gb|AAV62489.1| glucose-inhibited division protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 447

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     D + F  T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHT 387


>gi|327441063|dbj|BAK17428.1| NAD-utilizing enzyme [Solibacillus silvestris StLB046]
          Length = 437

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE + I+R G      +IN PK L  T + K    LF AG
Sbjct: 279 GFQTHLKWPEQKRVFSMIPGLENLEIVRYGVMHRNTFINSPKVLTQTYQLKARPNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV--LEP-- 423
           Q+ G  GY E+A  GL+AGIN+AR +   + + F   ++ +G M   +T       +P  
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAARMALGQELLYFPH-ETALGAMARYITHTDAKNFQPMN 397

Query: 424 --YRMFTSRAEYRISLRPDNAD 443
             + +F    E RI  +P+ A+
Sbjct: 398 VNFGIFPEFGE-RIKSKPERAE 418


>gi|55820943|ref|YP_139385.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           LMG 18311]
 gi|81170606|sp|Q5M4M7|TRMFO_STRT2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|55736928|gb|AAV60570.1| glucose-inhibited division protein [Streptococcus thermophilus LMG
           18311]
          Length = 447

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     D + F  T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHT 387


>gi|15675145|ref|NP_269319.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes M1
           GAS]
 gi|71910706|ref|YP_282256.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS5005]
 gi|26006773|sp|Q99ZL9|TRMFO_STRP1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13622306|gb|AAK34040.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           M1 GAS]
 gi|71853488|gb|AAZ51511.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS5005]
          Length = 448

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|169827112|ref|YP_001697270.1| tRNA uridine 5-carboxymethylaminomethyl modification protein gid
           [Lysinibacillus sphaericus C3-41]
 gi|205830362|sp|B1HQJ3|TRMFO_LYSSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|168991600|gb|ACA39140.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus sphaericus C3-41]
          Length = 437

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN PK L  T + ++   +F AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEKTYQLREQKNIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           Q+ G  GY E+A  GL+AGIN+AR +   + I F
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAARLALGQEPIIF 372


>gi|126654063|ref|ZP_01725889.1| glucose-inhibited division protein A [Bacillus sp. B14905]
 gi|126589443|gb|EAZ83590.1| glucose-inhibited division protein A [Bacillus sp. B14905]
          Length = 437

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN PK L  T + ++   +F AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEKTYQLREQKNIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           Q+ G  GY E+A  GL+AGIN+AR +   + I F
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAARLALGHEPIIF 372


>gi|312135861|ref|YP_004003199.1| gid protein [Caldicellulosiruptor owensensis OL]
 gi|311775912|gb|ADQ05399.1| gid protein [Caldicellulosiruptor owensensis OL]
          Length = 436

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G   +  YIN P+ L   L  KK   +F AG
Sbjct: 277 GFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+A+ G++AGIN+AR+    + +     ++ IG +I+ +T+
Sbjct: 337 QITGVEGYLESASTGIIAGINAARQVLGKEPVSLP-PNTCIGALIEYITT 385


>gi|313609073|gb|EFR84787.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes FSL F2-208]
          Length = 449

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 293 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 353 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-AETAIGSLAHYITS 401


>gi|262282244|ref|ZP_06060012.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sp.
           2_1_36FAA]
 gi|262261535|gb|EEY80233.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sp.
           2_1_36FAA]
          Length = 444

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 167/430 (38%), Gaps = 73/430 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKLTPQHKTTDFAELVCSNSLRG 59

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQR 109
                     DAL   +G + +    + R L+   +K   A R P   A      LA+ R
Sbjct: 60  ----------DALTNAVGLLKE----EMRRLDSVILKSAEATRVPAGGA------LAVDR 99

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           E  SQ   +++        +   ++  I  +   +   +  V+ TG      +     KI
Sbjct: 100 EGFSQMVTELV--------SNHPLVEVIREEITEIPEDAITVIATGPLTSDAL---AEKI 148

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIP 225
            A   GD         F  +D     +   T   +D   +     +DK E  + +  +  
Sbjct: 149 HALNGGDG--------FYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTK 197

Query: 226 FSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDK 281
             FM   D + N + E  +   + E  +     +    +    IK+  YGP     +E  
Sbjct: 198 QEFMDFHDALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYP 254

Query: 282 IVRFGERNGHQ------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
               G R+G        + L  +     +    G  T L    Q +  + IPGLE    +
Sbjct: 255 DDYQGPRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFV 314

Query: 336 RPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      Y++ P  L  T  ++K   LF AGQ+ G  GY E+AA GLVAGIN+AR   
Sbjct: 315 RYGVMHRNSYMDSPNLLEQTFRSRKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFK 374

Query: 395 KLDCICFSRT 404
             + + F  T
Sbjct: 375 GEEALVFPET 384


>gi|47093925|ref|ZP_00231664.1| gid protein [Listeria monocytogenes str. 4b H7858]
 gi|217964581|ref|YP_002350259.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes HCC23]
 gi|226223879|ref|YP_002757986.1| glucose inhibited division protein A [Listeria monocytogenes
           Clip81459]
 gi|290894170|ref|ZP_06557141.1| gid protein [Listeria monocytogenes FSL J2-071]
 gi|47017711|gb|EAL08505.1| gid protein [Listeria monocytogenes str. 4b H7858]
 gi|217333851|gb|ACK39645.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes HCC23]
 gi|225876341|emb|CAS05050.1| Putative glucose inhibited division protein A [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|290556300|gb|EFD89843.1| gid protein [Listeria monocytogenes FSL J2-071]
 gi|307570855|emb|CAR84034.1| gid protein [Listeria monocytogenes L99]
 gi|328468565|gb|EGF39565.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           1816]
          Length = 434

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-AETAIGSLAHYITS 386


>gi|332311721|gb|EGJ24816.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           TrmFO [Listeria monocytogenes str. Scott A]
          Length = 449

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 293 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 353 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-AETAIGSLAHYITS 401


>gi|46907503|ref|YP_013892.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|254824663|ref|ZP_05229664.1| gid protein [Listeria monocytogenes FSL J1-194]
 gi|254932407|ref|ZP_05265766.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           HPB2262]
 gi|255520258|ref|ZP_05387495.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J1-175]
 gi|50400231|sp|Q720E5|TRMFO_LISMF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46880771|gb|AAT04069.1| gid protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583964|gb|EFF95996.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           HPB2262]
 gi|293593902|gb|EFG01663.1| gid protein [Listeria monocytogenes FSL J1-194]
 gi|328475120|gb|EGF45904.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes 220]
          Length = 434

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-AETAIGSLAHYITS 386


>gi|289550958|ref|YP_003471862.1| tRNA:m(5)U-54 MTase gid [Staphylococcus lugdunensis HKU09-01]
 gi|315658460|ref|ZP_07911332.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289180490|gb|ADC87735.1| tRNA:m(5)U-54 MTase gid [Staphylococcus lugdunensis HKU09-01]
 gi|315496789|gb|EFU85112.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 435

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 177/473 (37%), Gaps = 103/473 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   A+ G +  LI          H T     + C+ ++ G      
Sbjct: 5   VNVIGAGLAGSEAAYQLAQRGINVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A          K PA  G     DR  +   +   + S 
Sbjct: 65  VGVLKEEMRRLDSLIIKAADQA----------KVPA--GGALAVDRHDFAGYVTDALRSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKI---- 169
            N+ V+  E+       +II+             T  LTT +  + +++I GK ++    
Sbjct: 113 PNVTVLNEEITQIPDGHSIIA-------------TGPLTTSSLAQEIVNITGKDQLYFYD 159

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L  +    ++ EK+
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLAAEVAPVNEFEKE 219

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++           R  L                      +GP     
Sbjct: 220 KYFEGCMPFEVMAER----------GRKTL---------------------LFGPMKPVG 248

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V I+R 
Sbjct: 249 LEDP--KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVEIVRY 306

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAG+N A K    
Sbjct: 307 GVMHRNTFINSPDVLNEKYELIGNEHIQFAGQMTGVEGYVESAASGLVAGVNLAHKLLAK 366

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
             + F R ++ IG M               + S A+   + +P NA+  L P+
Sbjct: 367 GEVIFPR-ETMIGSMA-------------YYISHAKNDKNFQPMNANFGLLPV 405


>gi|148988382|ref|ZP_01819829.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926063|gb|EDK77137.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
          Length = 306

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 150 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 209

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T + IG +   +T
Sbjct: 210 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPETTA-IGSLAHYIT 257


>gi|124022709|ref|YP_001017016.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9303]
 gi|205830318|sp|A2C8E1|TRMFO_PROM3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123962995|gb|ABM77751.1| NAD binding site:Glucose inhibited division protein A family
           protein [Prochlorococcus marinus str. MIT 9303]
          Length = 467

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E     +    G  T L    Q + ++ I
Sbjct: 253 IGLWDPRWG-DLNDRDVRRSKRAYAVVQLRKEDHEGRLWNLVGFQTNLKWSEQKRVLKMI 311

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++  P+ L PTL+  K S L  AGQI GT GY  A A G +A
Sbjct: 312 PGLHQAEFVRFGVMHRNTFLEAPQLLEPTLQFSKRSNLLAAGQITGTEGYTAAVAGGWLA 371

Query: 386 GINSARKSNKLDCICFSRTDSYIGVM 411
           G N+AR +  L+ I    T + IG +
Sbjct: 372 GSNAARLAMGLNTITLPST-TMIGAL 396


>gi|124026173|ref|YP_001015289.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. NATL1A]
 gi|205830316|sp|A2C3G4|TRMFO_PROM1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123961241|gb|ABM76024.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. NATL1A]
          Length = 467

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 25/205 (12%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           + PR+   + DK +R  +R    + L  E     +    G  T L    Q +  R IPGL
Sbjct: 256 WDPRWG-DVNDKNIRRLKRAHAVVQLRQEDKAGQLWNLVGFQTNLKWGEQKRIFRMIPGL 314

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            K   IR G      Y+ +PK + PTL+      LF AGQ+ GT GY  A A G +AG N
Sbjct: 315 SKAEFIRFGVMHRNTYLESPKLIEPTLQFINRKTLFAAGQLTGTEGYAAAIAGGWLAGTN 374

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +A  +  LD I    +      MI  LT+         F S ++   SLR  N  N   P
Sbjct: 375 AALLAKGLDTITLPSS-----TMIGALTN---------FVSNSQ--ASLRVKNKKN-FQP 417

Query: 449 IGMKLGCIGE------RRQKRFAKY 467
           +    G + E       +++R+ +Y
Sbjct: 418 MPANFGLLPELDNRVHNKRERYKEY 442


>gi|299536759|ref|ZP_07050067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus fusiformis ZC1]
 gi|298727771|gb|EFI68338.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus fusiformis ZC1]
          Length = 437

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE V I+R G      +IN PK L  T + ++   +F AG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEKTYQLREQKNIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           Q+ G  GY E+A  GL+AGIN+AR +   + + F
Sbjct: 339 QMTGVEGYVESAGSGLIAGINAARLALGQEPVIF 372


>gi|256384026|gb|ACU78596.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384858|gb|ACU79427.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455781|gb|ADH22016.1| tRNA:M(5)U-54 methyltransferase [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 438

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 157/407 (38%), Gaps = 80/407 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AGCEAA   A       L            KT+    + C+           
Sbjct: 5   VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRSQSLLNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILS 113
            G L  E+  L+ L+ ++AD+  I              G    A DRE +   +   I +
Sbjct: 65  AGILKAEMRRLNSLVIKIADSCKID-------------GDDALAVDREDFSKKLTEVIKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAG 172
             N+ +I+  V+  + E           N +   +T  LTT      +   IGK K+   
Sbjct: 112 HPNITIIEQNVSHIDDE-----------NDLTLIATGPLTTNELKEDIQRLIGKQKL--- 157

Query: 173 RMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
              D+ +  +    + F+  + +GR K G       K I     E++F +       F  
Sbjct: 158 FFMDASAPIITKDSIDFNKAYYSGRHKLG-------KYICCPLNEQEFNE-------FAD 203

Query: 231 DKITNRQIECGITRTNLETHRIIM----ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           + I   Q++        E  + I     + I+  A  S  +   GP    ++ D      
Sbjct: 204 NLINAEQVQLK------EFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSSNNLLD------ 251

Query: 287 ERNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            +N HQ +    L  +     +    G  T L    Q +  +TIPGL+K  I+R G   +
Sbjct: 252 -QNNHQPYAVVQLRQDDAKDSLYNMVGFQTNLKWPEQKRVFQTIPGLQKAKIVRYGVMHK 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
             YIN PK L   L+  +   +F AGQI G  GY E+A+ G+ A IN
Sbjct: 311 NYYINSPKILNFKLQVMRKKNVFFAGQITGVEGYIESASSGIWAAIN 357


>gi|217076585|ref|YP_002334301.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosipho africanus
           TCF52B]
 gi|226707909|sp|B7IFU6|TRMFO_THEAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|217036438|gb|ACJ74960.1| O tRNA:M(5)U-54 methyltransferase [Thermosipho africanus TCF52B]
          Length = 429

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 183/490 (37%), Gaps = 107/490 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V ++G G AG E A    + G    +           HK  T G + C+ ++        
Sbjct: 3   VNIVGAGLAGVEVAYKLLREGFKVRIFEQKPVKFSPVHKMETFGELVCSNSLKSESLKNA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L  E+  LD L+   A    +          PA  G     DRE +   + + + S 
Sbjct: 63  EGILKEEMKLLDSLVLNCAYKTRV----------PA--GKALAVDREKFSQCITKVLESF 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+++++ E          +  I +  N +   +T   T G F + +             
Sbjct: 111 ENIEIVRKE----------VEKIDLDTNEIWVVATGPTTDGKFAQWL------------- 147

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI- 233
                + L   F+ F FD           +   +I ++K              F+ D+  
Sbjct: 148 -----SKLTGGFLNF-FD------AVAPIISRDSIDFNK-------------CFVGDRYG 182

Query: 234 --TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER--- 288
             T   I C +T+   E     + N +   +   D K    R C  IE+ I + GE+   
Sbjct: 183 VGTGDYINCPMTKEEYERFYRELVNAEMIEMKDFDRKLLFER-CQPIEE-IAKSGEKSLL 240

Query: 289 ----------NGHQ-------IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
                     N H        I L  E    ++    G  T L    Q + IR IPGLE 
Sbjct: 241 FGPLRPVGLVNPHTGEIPYAVIQLRKEDEEGNMYNIVGFQTRLKWSEQKRIIRLIPGLEN 300

Query: 332 VNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
             I+R G      YI+ P+ L   L  KK   +F AGQI G  GY E+AA G+  G+N +
Sbjct: 301 AEILRYGVMHRNTYIDTPRVLDEFLRHKKYKNIFFAGQITGVEGYLESAACGIYVGLNIS 360

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           R  +  + +      + +G +I+ +T    L+P  M+ +     + ++ +    +L  I 
Sbjct: 361 RILSGKEPVKLP-PKTMMGALINYITKADELKP--MYANFGLINVKMKKNEKREKLHEI- 416

Query: 451 MKLGCIGERR 460
               CI E +
Sbjct: 417 ----CINEMK 422


>gi|213026621|ref|ZP_03341068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 120

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 506 EFLSYPDFSIQNLFSICPDARKFS-SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           + L  P+ +   L S+   A         E+++I+  Y  Y  RQ  E ++    E  L+
Sbjct: 2   DLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLL 61

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++K
Sbjct: 62  PATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLK 111


>gi|323339882|ref|ZP_08080151.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus ruminis ATCC 25644]
 gi|323092755|gb|EFZ35358.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus ruminis ATCC 25644]
          Length = 436

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   R G+     + L  +    D+    G  T L    Q +    IPGL
Sbjct: 241 FGPLKPVGLEDP--RTGKEPYAVVQLRQDNAVGDLYNIVGFQTHLKWGEQKRVFSMIPGL 298

Query: 330 EKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E    +R G      Y+ +P+ L  T +TKK S L  AGQ+ G  GY E+AA GL AG+N
Sbjct: 299 ENAQFVRYGVMHRNTYLRSPEFLKDTYQTKKRSDLLFAGQMTGVEGYVESAASGLYAGLN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLT 416
           +AR   + D + F   ++ +G M   +T
Sbjct: 359 AARLIEEKDPLVFP-VETMMGAMAHYIT 385


>gi|89895299|ref|YP_518786.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfitobacterium
           hafniense Y51]
 gi|122482353|sp|Q24UF0|TRMFO_DESHY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|89334747|dbj|BAE84342.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 437

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     + D   R G+R+   + L  E     +    G  T L    Q +  R IPG
Sbjct: 240 TFGPLKPVGLID--ARTGQRSYAVVQLRKENRAGTLFNLVGFQTHLKWGEQQRVFRLIPG 297

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE    +R G      ++N PK L      +K   LF AGQI G  GY E+ A GLVAG+
Sbjct: 298 LENAEFVRFGVMHRNTFLNAPKVLKADYSLQKTPQLFFAGQITGVEGYVESTASGLVAGL 357

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDL 415
           N+ R+   L  + F + ++ +G +   L
Sbjct: 358 NAVRRLKNLPTLIFPQ-ETALGALARHL 384


>gi|42561029|ref|NP_975480.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400612|sp|Q6MTB4|TMFO2_MYCMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|42492526|emb|CAE77122.1| glucose inhibited division protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321421|gb|ADK70064.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 438

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 154/394 (39%), Gaps = 54/394 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G AGCEAA   A       L   KT     +        L   +  R    L+ 
Sbjct: 5   VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCFNTFRSQSLLNA 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +   V+ +  G  + G    A DRE +   +   I +  N+ +I+  V+ 
Sbjct: 65  AGILKAEMRRLNSLVIKIADGCKIDGDDALAVDREDFSKKLTEVIKNHPNITIIEQNVSH 124

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNS 185
            + E           N +   +T  LTT      +   IGK K+      D+ ++ +   
Sbjct: 125 IDDE-----------NDLTLIATGPLTTNELKEDIQRLIGKQKL---FFIDASASIITKD 170

Query: 186 FMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            + F+  + +GR K G       K I     E++F +       F  + I   Q++    
Sbjct: 171 SIDFNKVYYSGRHKLG-------KYICCPLNEQEFNE-------FADNLINAEQVQLK-- 214

Query: 244 RTNLETHRIIM----ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF----L 295
               E  + I     + I+  A  S  +   GP    ++ D       +N HQ +    L
Sbjct: 215 ----EFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSPNNLLD-------QNNHQPYSVVQL 263

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L    Q +  +TIPGLEK  I+R G   +  YIN PK L   
Sbjct: 264 RQDDAKDSLYNMVGFQTNLKWPEQKRVFQTIPGLEKAKIVRYGVMHKNYYINSPKILNFK 323

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           L+  +   +F AGQI G  GY E+A+ G+ A IN
Sbjct: 324 LQVMRKKNVFFAGQITGVEGYIESASSGIWAAIN 357


>gi|297520906|ref|ZP_06939292.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Escherichia coli OP50]
          Length = 53

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG
Sbjct: 7  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGG 53


>gi|317153468|ref|YP_004121516.1| gid protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943719|gb|ADU62770.1| gid protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 442

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           GER    + L  E  +       G  T L    Q +  R IPGLE V  +R G      Y
Sbjct: 260 GERPYAVVQLRTENQDKTAFNLVGFQTKLKYPEQKRIFRMIPGLENVEFLRLGSIHRNTY 319

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +N P  L   L+ K  SG FLAGQI+G  GY E+AA GL  G++ AR+ + +  +     
Sbjct: 320 VNAPDVLDADLQLKARSGFFLAGQISGVEGYLESAACGLWVGLSLARRLSGVSVVK-PPV 378

Query: 405 DSYIGVMIDDLTSK 418
           ++ +G ++  L+++
Sbjct: 379 ETALGALLGHLSTR 392


>gi|319947070|ref|ZP_08021304.1| tRNA:M(5)U-54 methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319747118|gb|EFV99377.1| tRNA:M(5)U-54 methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 466

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK + LF AG
Sbjct: 310 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQANLFFAG 369

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR     +   F  T + IG +   +T
Sbjct: 370 QMTGVEGYVESAASGLVAGINAARLFKGEEASVFPETTA-IGSLAHYIT 417


>gi|283768284|ref|ZP_06341196.1| tRNA:M(5)U-54 methyltransferase [Bulleidia extructa W1219]
 gi|283104676|gb|EFC06048.1| tRNA:M(5)U-54 methyltransferase [Bulleidia extructa W1219]
          Length = 432

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLEK  I+R G      YIN PK L  T    +   LF AG
Sbjct: 276 GFQTHLKWPEQKKVIQLIPGLEKAEIVRYGVMHRNSYINSPKYLEDTYRVSREEKLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+ A G VAGIN A+     + I F +  + IG M
Sbjct: 336 QMTGVEGYIESCASGFVAGINMAQILQGQEEIHFGQ-GTMIGAM 378


>gi|257867808|ref|ZP_05647461.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC30]
 gi|257874135|ref|ZP_05653788.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC10]
 gi|257876700|ref|ZP_05656353.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC20]
 gi|257801891|gb|EEV30794.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC30]
 gi|257808299|gb|EEV37121.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC10]
 gi|257810866|gb|EEV39686.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC20]
          Length = 433

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E+   +R G      ++N  EL   T ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 298 EEAEFVRYGVMHRNSFMNSPELLQQTYQSKKREDLFFAGQMTGVEGYVESAASGLMAGIN 357

Query: 389 SAR 391
           +A+
Sbjct: 358 AAK 360


>gi|322373044|ref|ZP_08047580.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C150]
 gi|321278086|gb|EFX55155.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C150]
          Length = 447

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     D + F  T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFMGEDEVIFPHT 387


>gi|254430149|ref|ZP_05043852.1| tRNA:m(5)U-54 methyltransferase [Cyanobium sp. PCC 7001]
 gi|197624602|gb|EDY37161.1| tRNA:m(5)U-54 methyltransferase [Cyanobium sp. PCC 7001]
          Length = 463

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR   R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 249 IGLWDPRWG-DVNDREVRRARRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMI 307

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE+   +R G      ++  P+ L PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 308 PGLEQAEFVRFGVMHRNTFLEAPQLLDPTLQFRRRPTLLAAGQITGTEGYAAAVAGGWLA 367

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR +  L+ +    T
Sbjct: 368 GTNAARLARGLEPLTLPPT 386


>gi|168494371|ref|ZP_02718514.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575654|gb|EDT96182.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPET 384


>gi|148992924|ref|ZP_01822543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP9-BS68]
 gi|168490241|ref|ZP_02714440.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae SP195]
 gi|147928376|gb|EDK79392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571403|gb|EDT91931.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae SP195]
 gi|332073275|gb|EGI83754.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA17570]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPET 384


>gi|15902888|ref|NP_358438.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           R6]
 gi|116516642|ref|YP_816316.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           D39]
 gi|149019532|ref|ZP_01834851.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP23-BS72]
 gi|168491031|ref|ZP_02715174.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|169833706|ref|YP_001694391.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397933|ref|YP_002037581.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           G54]
 gi|33301132|sp|Q8DQ51|TRMFO_STRR6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|122278798|sp|Q04KY2|TRMFO_STRP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830363|sp|B1IBA6|TRMFO_STRPI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707908|sp|B5E446|TRMFO_STRP4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|15458446|gb|AAK99648.1| Glucose inhibited division protein [Streptococcus pneumoniae R6]
 gi|116077218|gb|ABJ54938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae D39]
 gi|147930907|gb|EDK81887.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996208|gb|ACA36820.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183574642|gb|EDT95170.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|194357600|gb|ACF56048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae G54]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPET 384


>gi|168483013|ref|ZP_02707965.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043339|gb|EDT51385.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|332201408|gb|EGJ15478.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA47368]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPET 384


>gi|148984684|ref|ZP_01817952.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP3-BS71]
 gi|148998622|ref|ZP_01826062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP11-BS70]
 gi|149006382|ref|ZP_01830094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP18-BS74]
 gi|168485894|ref|ZP_02710402.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168575605|ref|ZP_02721541.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|221231710|ref|YP_002510862.1| protein Gid homolog [Streptococcus pneumoniae ATCC 700669]
 gi|225854448|ref|YP_002735960.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           JJA]
 gi|225856604|ref|YP_002738115.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           P1031]
 gi|298230562|ref|ZP_06964243.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254564|ref|ZP_06978150.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503049|ref|YP_003724989.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307067600|ref|YP_003876566.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pneumoniae AP200]
 gi|307127505|ref|YP_003879536.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|254789179|sp|B8ZP43|TRMFO_STRPJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789181|sp|C1CDT9|TRMFO_STRZJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789182|sp|C1CK27|TRMFO_STRZP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147755620|gb|EDK62667.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762159|gb|EDK69121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP18-BS74]
 gi|147923075|gb|EDK74190.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP3-BS71]
 gi|183571064|gb|EDT91592.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183578674|gb|EDT99202.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|220674170|emb|CAR68696.1| protein Gid homolog [Streptococcus pneumoniae ATCC 700669]
 gi|225723936|gb|ACO19789.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae JJA]
 gi|225724389|gb|ACO20241.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae P1031]
 gi|298238644|gb|ADI69775.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799923|emb|CBW32504.1| protein Gid homolog [Streptococcus pneumoniae OXC141]
 gi|306409137|gb|ADM84564.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pneumoniae AP200]
 gi|306484567|gb|ADM91436.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|332075557|gb|EGI86025.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA17545]
 gi|332202798|gb|EGJ16867.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA41317]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEESEVIFPET 384


>gi|219669733|ref|YP_002460168.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfitobacterium
           hafniense DCB-2]
 gi|219539993|gb|ACL21732.1| gid protein [Desulfitobacterium hafniense DCB-2]
          Length = 437

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     + D   R G+R+   + L  E     +    G  T L    Q +  R IPG
Sbjct: 240 TFGPLKPVGLID--ARTGQRSYAVVQLRKENRAGTLFNLVGFQTHLKWGEQQRVFRLIPG 297

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE    +R G      ++N PK L      +K   LF AGQI G  GY E+ A GLVAG+
Sbjct: 298 LENAEFVRFGVMHRNTFLNAPKVLKADYSLQKTPQLFFAGQITGVEGYVESTASGLVAGL 357

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDL 415
           N+ R+   L  + F + ++ +G +   L
Sbjct: 358 NAVRRLKNLPTLIFPQ-ETALGALARHL 384


>gi|313665363|ref|YP_004047234.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma leachii PG50]
 gi|312949750|gb|ADR24346.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma leachii PG50]
          Length = 438

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 157/407 (38%), Gaps = 80/407 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AGCEAA   A       L            KT+    + C+           
Sbjct: 5   VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRSQSLLNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILS 113
            G L  E+  L+ L+ ++AD   I              G    A DRE +   +   I +
Sbjct: 65  AGILKAEMRRLNSLVIKIADCCKID-------------GDDALAVDREDFSKRLTDVIKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAG 172
             N+ +I+  V+  N E           N +   +T  LTT      +   IGK K+   
Sbjct: 112 HPNITIIEQNVSHINDE-----------NDLTLIATGPLTTNELKEDIQRLIGKQKL--- 157

Query: 173 RMGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
              D+ +  +    + F+  + +GR K G       K I     E++F +       F+ 
Sbjct: 158 FFMDASAPIITKDSIDFNKVYYSGRHKLG-------KYICCPLNEQEFNE-------FVD 203

Query: 231 DKITNRQIECGITRTNLETHRIIM----ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           + I   Q++        E  + I     + I+  A  S  +   GP    ++ D      
Sbjct: 204 NLINAEQVQLK------EFEKSIFFKGCQPIEQLAKTSKKLLLKGPMSPNNLLD------ 251

Query: 287 ERNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            +N  Q +    L  + +   +    G  T L    Q +  +TIPGLEK  I+R G   +
Sbjct: 252 -QNNQQPYAVVQLRQDDVKDSLYNMVGFQTNLKWPEQKRVFQTIPGLEKAKIVRYGVMHK 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
             YIN PK L   L+  +   +F AGQI G  GY E+A+ G+ A IN
Sbjct: 311 NYYINSPKILNFKLQVMRKKNVFFAGQITGVEGYIESASSGIWAAIN 357


>gi|222153070|ref|YP_002562247.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus uberis 0140J]
 gi|254789180|sp|B9DS62|TRMFO_STRU0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222113883|emb|CAR42047.1| protein Gid homolog [Streptococcus uberis 0140J]
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRANENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR     + I F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEAIIFPETTA 386


>gi|237734603|ref|ZP_04565084.1| tRNA (uracil-5-)-methyltransferase gid [Mollicutes bacterium D7]
 gi|229382423|gb|EEO32514.1| tRNA (uracil-5-)-methyltransferase gid [Coprobacillus sp. D7]
          Length = 434

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE  + +R G      +I +PK L  T + K  S +F+AG
Sbjct: 276 GFQTHLTWPEQKRIIQMIPGLENASFVRYGVMHRNSFICSPKHLLKTYQLKNYSNIFMAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT--SKGVLEPYR 425
           QI G  GY E+A  G+ AGIN  R     + + F   ++ +G + + +T  SK   +P +
Sbjct: 336 QITGVEGYVESAQSGMAAGINMVRLLEDKEPLIFPE-NTVMGALANYITNASKEDFQPMK 394


>gi|167756894|ref|ZP_02429021.1| hypothetical protein CLORAM_02443 [Clostridium ramosum DSM 1402]
 gi|167703069|gb|EDS17648.1| hypothetical protein CLORAM_02443 [Clostridium ramosum DSM 1402]
          Length = 434

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE  + +R G      +I +PK L  T + K  S +F+AG
Sbjct: 276 GFQTHLTWPEQKRIIQMIPGLENASFVRYGVMHRNSFICSPKHLLKTYQLKNYSNIFMAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT--SKGVLEPYR 425
           QI G  GY E+A  G+ AGIN  R     + + F   ++ +G + + +T  SK   +P +
Sbjct: 336 QITGVEGYVESAQSGMAAGINMVRLLEDKEPLIFPE-NTVMGALANYITNASKEDFQPMK 394


>gi|325570944|ref|ZP_08146563.1| tRNA:M(5)U-54 methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156270|gb|EGC68454.1| tRNA:M(5)U-54 methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 433

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     +ED   + G+R    I L  +     +    G  T L    Q +  R IPGL
Sbjct: 240 FGPMKPVGLEDP--KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           E+   +R G      ++N  EL   T ++KK   LF AGQ+ G  GY E+AA GL+AGIN
Sbjct: 298 EEAEFVRYGVMHRNSFMNSPELLQQTYQSKKREDLFFAGQMTGVEGYVESAASGLMAGIN 357

Query: 389 SAR 391
           +A+
Sbjct: 358 AAK 360


>gi|289449591|ref|YP_003475176.1| tRNA:M(5)U-54 methyltransferase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184138|gb|ADC90563.1| tRNA:M(5)U-54 methyltransferase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 460

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L +  Q +    IPGL K    R G      +IN PK L PT  T+K   LF AG
Sbjct: 276 GFQTRLKQGEQRRVFGLIPGLSKAIFYRYGVMHRNTFINSPKHLNPTYATRKRHDLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           Q+ G  GY E+ A G+VA IN+ R    L  + F +  + IG M + ++   V
Sbjct: 336 QMTGVEGYVESIASGMVAAINAVRYFYNLPELVFPK-QTVIGAMANYISDPEV 387


>gi|312866589|ref|ZP_07726804.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parasanguinis F0405]
 gi|311097888|gb|EFQ56117.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parasanguinis F0405]
          Length = 444

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR     +   F  T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEAAIFPETTA-IGSLAHYIT 395


>gi|296876493|ref|ZP_06900544.1| FADH(2)-oxidizing protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432486|gb|EFH18282.1| FADH(2)-oxidizing protein [Streptococcus parasanguinis ATCC 15912]
          Length = 444

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GLVAGIN+AR     +   F  T + IG +   +T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEAAIFPETTA-IGSLAHYIT 395


>gi|315282100|ref|ZP_07870586.1| methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Listeria marthii FSL S4-120]
 gi|313614252|gb|EFR87910.1| methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Listeria marthii FSL S4-120]
          Length = 146

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE   I+R G      +IN P  L PT + K  + LF AGQ+ G  GY E+AA GL 
Sbjct: 7   IPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVESAASGLA 66

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           AGIN+A    + + + F   ++ IG +   +TS
Sbjct: 67  AGINAANFVEEKELVVFP-AETAIGSLAHYITS 98


>gi|332360454|gb|EGJ38265.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK355]
          Length = 444

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 160/422 (37%), Gaps = 72/422 (17%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           VIG G AG EAA   AK G    L           HKT+    + C+ ++ G        
Sbjct: 8   VIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG-------- 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             DAL   +G + +    + R L+   +K   A R P   A      LA+ RE  SQ   
Sbjct: 60  --DALTNAVGLLKE----EMRRLDSVILKAAEATRVPAGGA------LAVDREGFSQMVT 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++        T   +I  I  +   +   +  V+ TG      +     KI A   G  
Sbjct: 108 ELV--------TNHPLIEVIREEITEIPEDAITVIATGPLTSDAL---AEKIHALNGG-- 154

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII----WDKTEKQFADERLIPFSFMT--D 231
                 N F  +D     +   T   +D   +     +DK E  + +  +    FM   D
Sbjct: 155 ------NGFYFYDAAAPIIDVNT---IDMTKVYLKSRYDKGEAAYLNAPMTKQEFMDFHD 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGERN 289
            + N + E  +   + E  +     +    +    IK+  YGP     +E      G R+
Sbjct: 206 ALVNAE-EAPLN--SFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQGPRD 262

Query: 290 GH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           G        + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 263 GEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 322

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVA IN+AR     + + F 
Sbjct: 323 SYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVASINAARLFKGEEALVFP 382

Query: 403 RT 404
            T
Sbjct: 383 ET 384


>gi|313635547|gb|EFS01764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria seeligeri FSL N1-067]
          Length = 101

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 57/87 (65%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P +
Sbjct: 10  VAEQVEIQVKYEGYIQKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLS 69

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 70  IAQASRISGVNPADISILLVYIEQGKI 96


>gi|254416490|ref|ZP_05030242.1| tRNA:m(5)U-54 methyltransferase [Microcoleus chthonoplastes PCC
           7420]
 gi|196176694|gb|EDX71706.1| tRNA:m(5)U-54 methyltransferase [Microcoleus chthonoplastes PCC
           7420]
          Length = 452

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L+PTL+ K    L  AG
Sbjct: 291 GFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPELLYPTLQFKNRPTLLAAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  A+A G +AG N+AR    L+ I    T + +G + + ++S
Sbjct: 351 QLMGTEGYTAASAGGWLAGTNAARLVLGLEPITLPPT-TMMGALFEFISS 399


>gi|207111185|ref|ZP_03245347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 50

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           R ++YIGV+IDDL +KG  EPYRMFTSRAEYR+ LR DN 
Sbjct: 9   RNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNT 48


>gi|312862814|ref|ZP_07723054.1| tRNA:m(5)U-54 methyltransferase [Streptococcus vestibularis F0396]
 gi|311101674|gb|EFQ59877.1| tRNA:m(5)U-54 methyltransferase [Streptococcus vestibularis F0396]
          Length = 447

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEEEVIFPQT 387


>gi|218283547|ref|ZP_03489537.1| hypothetical protein EUBIFOR_02127 [Eubacterium biforme DSM 3989]
 gi|218215815|gb|EEC89353.1| hypothetical protein EUBIFOR_02127 [Eubacterium biforme DSM 3989]
          Length = 432

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE + I R G      Y++ P  L  T ++KK   LF AG
Sbjct: 276 GFQTHLTWPEQRRVFALIPGLENLKITRYGVMHRNSYLSSPVVLKETYQSKKRDDLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+ A GL+AGIN A      + ICF  T
Sbjct: 336 QLTGVEGYVESCASGLIAGINMALYMQGKEPICFGNT 372


>gi|322516883|ref|ZP_08069782.1| tRNA:M(5)U-54 methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322124583|gb|EFX96060.1| tRNA:M(5)U-54 methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 447

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR     + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEEEVIFPQT 387


>gi|315305257|ref|ZP_07875213.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria ivanovii FSL F6-596]
 gi|313626379|gb|EFR95556.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria ivanovii FSL F6-596]
          Length = 100

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 57/87 (65%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P +
Sbjct: 10  VAEQVEIQVKYEGYIEKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLS 69

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 70  IAQASRISGVNPADISILLVYIEQGKI 96


>gi|302872578|ref|YP_003841214.1| gid protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575437|gb|ADL43228.1| gid protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 436

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G   +  YIN P+ L   L  KK   +F AG
Sbjct: 277 GFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLTKYLFLKKYPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA G++AGIN+A +    + +    + + IG +I+ +T+
Sbjct: 337 QITGVEGYLESAATGIIAGINAAMQVLGKEPVSLPPS-TCIGALIEYITT 385


>gi|269798028|ref|YP_003311928.1| gid protein [Veillonella parvula DSM 2008]
 gi|269094657|gb|ACZ24648.1| gid protein [Veillonella parvula DSM 2008]
          Length = 438

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 156/423 (36%), Gaps = 72/423 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIYVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++   ADA  +          PA  G     DR L+   + +++ S
Sbjct: 65  AVGLLKEEMRRLGSIIMECADATAV----------PA--GGALAVDRHLFSEMVTKKVKS 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV     E                  TV+  +G  L  V    K+K   G 
Sbjct: 113 HPNITVHHEEVTEIPIE-----------------GTVIFASGP-LTSVALGDKIKALTGE 154

Query: 174 MG----DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            G    D+ +  +    + +D  F   R   G     D   +    TE+++        +
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEYK-------A 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVR 284
           F  +  T   ++      + E   I  E      I +    D   YGP     + DK  R
Sbjct: 203 FWHELTTAEAVQP----KDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--R 255

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      
Sbjct: 256 TNEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNT 315

Query: 345 YINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN  EL     + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +
Sbjct: 316 YINSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPK 375

Query: 404 TDS 406
           T +
Sbjct: 376 TTA 378


>gi|116072996|ref|ZP_01470258.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
 gi|116068301|gb|EAU74053.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
          Length = 453

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 2/126 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 253 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLI 311

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE+   +R G      ++   EL  PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 312 PGLEEAEFVRFGVMHRNTFLEAPELLEPTLQFRRRERLLAAGQITGTEGYAAAVAGGWLA 371

Query: 386 GINSAR 391
           G N+AR
Sbjct: 372 GTNAAR 377


>gi|293365193|ref|ZP_06611910.1| glucose-inhibited division protein Gid [Streptococcus oralis ATCC
           35037]
 gi|291316643|gb|EFE57079.1| glucose-inhibited division protein Gid [Streptococcus oralis ATCC
           35037]
          Length = 466

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 310 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 369

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 370 QMTGVEGYVESAASGLVAGINAAR 393


>gi|322392102|ref|ZP_08065564.1| tRNA:M(5)U-54 methyltransferase [Streptococcus peroris ATCC 700780]
 gi|321145002|gb|EFX40401.1| tRNA:M(5)U-54 methyltransferase [Streptococcus peroris ATCC 700780]
          Length = 456

 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 300 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 360 QMTGVEGYVESAASGLVAGINAAR 383


>gi|87302334|ref|ZP_01085159.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
 gi|87283259|gb|EAQ75215.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
          Length = 453

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 248 IGLWDPRWG-DLHDRDVRRAKRAYAVVQLRQEDRDGRLWNLVGFQTNLKWGEQKRVLRLI 306

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE    +R G      ++  P+ L PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 307 PGLENAEFVRFGVMHRNTFLEAPQLLDPTLQFRQRPTLLAAGQITGTEGYAAAVAGGWLA 366

Query: 386 GINSARKSNKLDCICFSRTDSYIGVM 411
           G N+AR ++    I    T + IG +
Sbjct: 367 GTNAARLAHGRSPIALPPT-TMIGAL 391


>gi|301794083|emb|CBW36489.1| protein Gid homolog [Streptococcus pneumoniae INV104]
 gi|332204945|gb|EGJ19010.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA47901]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRIFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|301801784|emb|CBW34495.1| protein Gid homolog [Streptococcus pneumoniae INV200]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLGQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|78184998|ref|YP_377433.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9902]
 gi|123581324|sp|Q3AX63|TRMFO_SYNS9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78169292|gb|ABB26389.1| Gid protein [Synechococcus sp. CC9902]
          Length = 460

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 257 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQRRVLQMI 315

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++ +P+ L PTL+ +    L  AGQI GT GY  A A G +A
Sbjct: 316 PGLAQAEFVRFGVMHRNTFLESPQLLDPTLQFRTRRHLLAAGQITGTEGYAAAVAGGWLA 375

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR    LD I    T
Sbjct: 376 GTNAARLVRGLDPIALPNT 394


>gi|322388011|ref|ZP_08061618.1| tRNA:M(5)U-54 methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141284|gb|EFX36782.1| tRNA:M(5)U-54 methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|289167791|ref|YP_003446060.1| Gid NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus mitis B6]
 gi|288907358|emb|CBJ22195.1| Gid NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus mitis B6]
          Length = 456

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 300 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 360 QMTGVEGYVESAASGLVAGINAAR 383


>gi|307708581|ref|ZP_07645045.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis NCTC 12261]
 gi|307615330|gb|EFN94539.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis NCTC 12261]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|332076222|gb|EGI86688.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA41301]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|306829300|ref|ZP_07462490.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428386|gb|EFM31476.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|225858738|ref|YP_002740248.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           70585]
 gi|254789178|sp|C1C6S2|TRMFO_STRP7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225720385|gb|ACO16239.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 70585]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|307709129|ref|ZP_07645588.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK564]
 gi|322376442|ref|ZP_08050935.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. M334]
 gi|307620075|gb|EFN99192.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK564]
 gi|321282249|gb|EFX59256.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. M334]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|331266590|ref|YP_004326220.1| tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326683262|emb|CBZ00880.1| tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|303254410|ref|ZP_07340516.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           BS455]
 gi|302598577|gb|EFL65617.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           BS455]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|182683887|ref|YP_001835634.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
 gi|182629221|gb|ACB90169.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
          Length = 468

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 312 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 371

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 372 QMTGVEGYVESAASGLVAGINAAR 395


>gi|149010413|ref|ZP_01831784.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|303259853|ref|ZP_07345828.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP-BS293]
 gi|303262267|ref|ZP_07348211.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264689|ref|ZP_07350607.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS397]
 gi|303267218|ref|ZP_07353083.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS457]
 gi|303269504|ref|ZP_07355269.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS458]
 gi|26006770|sp|Q97R84|TRMFO_STRPN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830456|sp|B2IP98|TRMFO_STRPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147764894|gb|EDK71823.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|302636590|gb|EFL67081.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639058|gb|EFL69518.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP-BS293]
 gi|302640940|gb|EFL71322.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS458]
 gi|302643227|gb|EFL73509.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS457]
 gi|302645776|gb|EFL76005.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS397]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|322374518|ref|ZP_08049032.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C300]
 gi|321280018|gb|EFX57057.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C300]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|270292951|ref|ZP_06199162.1| Gid protein [Streptococcus sp. M143]
 gi|270278930|gb|EFA24776.1| Gid protein [Streptococcus sp. M143]
          Length = 456

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 300 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 360 QMTGVEGYVESAASGLVAGINAAR 383


>gi|160915176|ref|ZP_02077389.1| hypothetical protein EUBDOL_01184 [Eubacterium dolichum DSM 3991]
 gi|158432975|gb|EDP11264.1| hypothetical protein EUBDOL_01184 [Eubacterium dolichum DSM 3991]
          Length = 431

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE V+I+R G      Y+  PK L PT +      LF AG
Sbjct: 276 GFQTHLKWGEQKRILSMIPGLENVSIVRYGVMHRNSYLCAPKVLRPTYQHCTRDDLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG+N A       C+    T   +G M++ +T
Sbjct: 336 QLCGVEGYVESAASGLLAGLNMANLIRGKACVELPST-CVMGSMVNYIT 383


>gi|307706444|ref|ZP_07643253.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK321]
 gi|307618154|gb|EFN97312.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK321]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|306825444|ref|ZP_07458784.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432382|gb|EFM35358.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|116072431|ref|ZP_01469698.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
 gi|116064953|gb|EAU70712.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
          Length = 460

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 257 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 315

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++ +P+ L PTL+ +    L  AGQI GT GY  A A G +A
Sbjct: 316 PGLAQAEFVRFGVMHRNTFLESPQLLDPTLQFRTRRHLLAAGQITGTEGYAAAVAGGWLA 375

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR    LD I    T
Sbjct: 376 GTNAARLVRGLDPIALPNT 394


>gi|315612954|ref|ZP_07887865.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315064|gb|EFU63105.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 444

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|21910357|ref|NP_664625.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS315]
 gi|28895934|ref|NP_802284.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           SSI-1]
 gi|21904554|gb|AAM79428.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           MGAS315]
 gi|28811184|dbj|BAC64117.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           SSI-1]
          Length = 494

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    L  AG
Sbjct: 337 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLLFAG 396

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T +
Sbjct: 397 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTTA 435


>gi|15900822|ref|NP_345426.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TIGR4]
 gi|111658058|ref|ZP_01408760.1| hypothetical protein SpneT_02000791 [Streptococcus pneumoniae
           TIGR4]
 gi|14972418|gb|AAK75066.1| Gid protein [Streptococcus pneumoniae TIGR4]
          Length = 456

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 300 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 360 QMTGVEGYVESAASGLVAGINAAR 383


>gi|307703731|ref|ZP_07640672.1| tRNA:m(5)U-54 methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307622566|gb|EFO01562.1| tRNA:m(5)U-54 methyltransferase [Streptococcus oralis ATCC 35037]
          Length = 444

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|86607553|ref|YP_476315.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123504233|sp|Q2JQ64|TRMFO_SYNJB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86556095|gb|ABD01052.1| gid protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 166/434 (38%), Gaps = 74/434 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK--- 55
           + V+GGG AG EAA   A+ G    L           H T  +G + C+ + G       
Sbjct: 22  IHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHHTDQLGELVCSNSFGAAASDRA 81

Query: 56  -GHLVREIDALDGLMGRVADA----AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            G L  E+  L  L+   AD     AG    V   +   A+    T+A +   R+ ++RE
Sbjct: 82  AGLLKEELRQLGSLVIATADCHAVPAGGALAVDRARFSQAL----TEAIQNHPRITLRRE 137

Query: 111 ILSQ--ENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++  E + V+  G +      K + +   ++  S    S+ ++T  +  R V+     
Sbjct: 138 EVTEIPEGIAVLCTGPLTSDPLAKALQAFTGLEYLSFFDASSPIVTGDSLNRAVV----- 192

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                                  F   R   G  A L+        TE ++  ER     
Sbjct: 193 -----------------------FQASRYDKGEAAYLNCPM-----TEAEY--ERFWRAL 222

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMEN---IKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
              ++   +  E           R   E    I+  A    D   +GP     + D   R
Sbjct: 223 VEAEQAPLKDFE--------REERKFFEGCLPIEEMARRGKDTLCFGPLKPVGLVDP--R 272

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
            G R    + L  E     +    G  T L    Q +  R IPGLE+   +R G      
Sbjct: 273 TGSRPYAVVQLRQEDKAGQLWNLVGFQTNLKWGEQQRVFRLIPGLEQAEFVRFGVMHRNT 332

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           ++N P+ L+PTL+ ++   LF AGQ+ GT GY  A A G +AG N+AR +  L  I    
Sbjct: 333 FLNSPQLLWPTLQFRRRPTLFAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLP- 391

Query: 404 TDSYIGVMIDDLTS 417
            ++ +G +   ++S
Sbjct: 392 PETMMGSLFQFISS 405


>gi|228476748|ref|ZP_04061414.1| tRNA:M(5)U-54 methyltransferase [Streptococcus salivarius SK126]
 gi|228251619|gb|EEK10720.1| tRNA:M(5)U-54 methyltransferase [Streptococcus salivarius SK126]
          Length = 447

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++K    LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T +
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEEELIFPHTTA 389


>gi|26006761|sp|Q8K7G4|TRMFO_STRP3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    L  AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSRSNPNLLFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+AR   + + + F +T
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKREEALIFPQT 387


>gi|309775659|ref|ZP_07670658.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916565|gb|EFP62306.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 431

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLEKV+I+R G      Y+  PK L  T +  +   LF AG
Sbjct: 276 GFQTHLKWGEQKRLLSMIPGLEKVSIVRYGVMHRNSYLCAPKVLRATYQHIERDDLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG+N A    +  CI    T   IG M   +T
Sbjct: 336 QLCGVEGYVESAASGLLAGLNMANLMREKRCIELPDT-CVIGSMAHYIT 383


>gi|39997642|ref|NP_953593.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter sulfurreducens
           PCA]
 gi|50400233|sp|Q74A44|TRMFO_GEOSL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39984534|gb|AAR35920.1| gid protein [Geobacter sulfurreducens PCA]
 gi|298506582|gb|ADI85305.1| tRNA (5-methyl-U54)-methylenetransferase/reductase [Geobacter
           sulfurreducens KN400]
          Length = 434

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 148/404 (36%), Gaps = 66/404 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGL----G 54
           V +IGGG AGCEAA   A  G    L           H  S +  + C+ ++ G      
Sbjct: 5   VTIIGGGLAGCEAAWQIAGRGVRVVLREMKPQRYSPAHHLSGLAELVCSNSLRGESLENA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+     L+   ADA  +          PA  G     DREL+   +   I   
Sbjct: 65  VGLLKEELRRAGSLIMAAADATRV----------PA--GGALAVDRELFSSYVTERIEGH 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +++++ EV     E  ++  S  +  D    R   +   +  F   +  I        
Sbjct: 113 PLIELVREEVTELPAEGVLVIASGPLTSDALAERLKQITGDSLYFYDAIAPI-------- 164

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII-WDKTEKQFADERLIPFSFMTD 231
                 ++SL +  +   F   R   G     DG   +    +E+++  ER +      +
Sbjct: 165 ----VAADSLDSDKV---FRASRYGKG-----DGDDYLNCPLSEEEY--ERFVDAVLAAE 210

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCPSIEDKIVRFGER 288
           K+  R  E  +          + E  + +  + G +K  G   PR        +V+    
Sbjct: 211 KVPARDFEKVVHFEGCMPVEEMAERGRETLRF-GPLKPVGLTDPRTGRE-PHAVVQLRAE 268

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
           N         G  T + +P           Q +  R IPGLE    +R G      +IN 
Sbjct: 269 NREGTLFNLVGFQTKLTWPE----------QRRVFRMIPGLESAEFVRLGSMHRNTFINA 318

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           P  L PT   K     F AGQI G  GY E+A  G +AGINSAR
Sbjct: 319 PTLLEPTFRLKGDPRTFFAGQITGVEGYVESAGSGFLAGINSAR 362


>gi|294791908|ref|ZP_06757056.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 6_1_27]
 gi|294457138|gb|EFG25500.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 6_1_27]
          Length = 438

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 156/423 (36%), Gaps = 72/423 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++   ADA  +          PA  G     DR L+   + +++  
Sbjct: 65  AVGLLKEEMRRLGSIIMECADATAV----------PA--GGALAVDRHLFSEMVTKKVKG 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV    TE                 +TV+  +G      +   K+K   G 
Sbjct: 113 HPNITVHLEEVTELPTE-----------------ATVIFASGPLTSEALG-DKIKALTGE 154

Query: 174 MG----DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            G    D+ +  +    + +D  F   R   G     D   +    TE+++        +
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEYK-------A 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVR 284
           F  +  T   ++      + E   I  E      I +    D   YGP     + DK  R
Sbjct: 203 FWHELTTAEAVQP----KDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--R 255

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      
Sbjct: 256 TDEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNT 315

Query: 345 YINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN  EL     + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +
Sbjct: 316 YINSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPK 375

Query: 404 TDS 406
           T +
Sbjct: 376 TTA 378


>gi|329115799|ref|ZP_08244516.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326906204|gb|EGE53118.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 444

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEETFQSRANQNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR     + + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKGEEKVVFPSTTA 386



 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 26/136 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++SY + +IG G AG EAA   AK G    L           HKTS    + C+ +  G
Sbjct: 1   MSQSY-INIIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R    AG + RV      PA  G     DRE Y  ++ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMR----AGEKHRV------PA--GGAMAVDREGYAESVT 107

Query: 109 REILSQENLDVIQGEV 124
            E+ +   ++VI+GE+
Sbjct: 108 TELENNPLIEVIRGEI 123


>gi|302035679|ref|YP_003796001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Candidatus Nitrospira defluvii]
 gi|300603743|emb|CBK40075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Candidatus Nitrospira defluvii]
          Length = 438

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+    N H       G  T + YP           Q +  R IPGLE    +R G   
Sbjct: 262 VVQLRTENAHGTCYNMVGFQTKLTYPE----------QRRVFRLIPGLENAEFLRLGSLH 311

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
              +IN P+ L  TL+ K    +F AGQ+ G  GY E+AA G +AGIN+AR
Sbjct: 312 RNTFINSPQLLRDTLQLKSRGTVFFAGQLVGVEGYTESAAMGGIAGINAAR 362



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 25/131 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           D+++IGGG AG EAA  AA  GA   L           HKT  +  + C+ ++G      
Sbjct: 4   DIVIIGGGLAGTEAAWQAANRGAKVTLYEMRPKEMTKAHKTGDLAELVCSNSLGSADPLN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L+ L+ R A+ A +          PA  G     DRE +   + + +  
Sbjct: 64  APGILKTEMRRLNSLVIRAAEEARV----------PA--GSALAVDREQFARVITQALEG 111

Query: 114 QENLDVIQGEV 124
             N+ +++ EV
Sbjct: 112 HPNIRIMREEV 122


>gi|154249431|ref|YP_001410256.1| tRNA (uracil-5-)-methyltransferase Gid [Fervidobacterium nodosum
           Rt17-B1]
 gi|205830334|sp|A7HL16|TRMFO_FERNB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154153367|gb|ABS60599.1| gid protein [Fervidobacterium nodosum Rt17-B1]
          Length = 430

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     I D   + G+     I L  E +   +    G  T L    Q + I+ 
Sbjct: 237 DAMRYGPLRPVGIVDP--KTGKEPYAVIQLRKENVEGTMYNIVGFQTRLKWGEQRRIIQL 294

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE   I+R G      YI+ PK L   L  KK+  +F AGQI G  GY E+A  GL 
Sbjct: 295 IPGLENAEILRYGVMHRNSYIDSPKVLDEYLRLKKMPNVFFAGQITGVEGYVESAMTGLY 354

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            G+N +R     D I F    +  G ++  +T+   L+P
Sbjct: 355 VGLNISRLILGKDMIKFPE-KTMCGALVRYITTAPELKP 392


>gi|149002492|ref|ZP_01827426.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP14-BS69]
 gi|237650521|ref|ZP_04524773.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820811|ref|ZP_04596656.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147759429|gb|EDK66421.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP14-BS69]
          Length = 444

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GLVAGIN+ R   +   + F  T
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVRLFKEESEVIFPET 384


>gi|294793768|ref|ZP_06758905.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 3_1_44]
 gi|294455338|gb|EFG23710.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 3_1_44]
          Length = 438

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 156/423 (36%), Gaps = 72/423 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++   ADA  +          PA  G     DR L+   + +++  
Sbjct: 65  AVGLLKEEMRRLGSIIMECADATAV----------PA--GGALAVDRHLFSEMVTKKVKG 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV    TE                 +TV+  +G      +   K+K   G 
Sbjct: 113 HPNITVHLEEVTELPTE-----------------ATVIFASGPLTSEALG-DKIKALTGE 154

Query: 174 MG----DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            G    D+ +  +    + +D  F   R   G     D   +    TE+++        +
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEYK-------A 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVR 284
           F  +  T   ++      + E   I  E      I +    D   YGP     + DK  R
Sbjct: 203 FWHELTTAEAVQP----KDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--R 255

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      
Sbjct: 256 TDEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNT 315

Query: 345 YINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN  EL     + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +
Sbjct: 316 YINSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPK 375

Query: 404 TDS 406
           T +
Sbjct: 376 TTA 378


>gi|332522955|ref|ZP_08399207.1| tRNA:m(5)U-54 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314219|gb|EGJ27204.1| tRNA:m(5)U-54 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 444

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRANDNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+A+K      + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAKKFKGEAEVIFPETTA 386


>gi|172035700|ref|YP_001802201.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. ATCC 51142]
 gi|205830330|sp|B1WR77|TRMFO_CYAA5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|171697154|gb|ACB50135.1| gid protein [Cyanothece sp. ATCC 51142]
          Length = 460

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L PTL+ K    L  AG
Sbjct: 293 GFQTNLKWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLDPTLQFKSRPTLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  A+A G +AG N+AR +  L+ I    T + +G + + ++S
Sbjct: 353 QLIGTEGYTAASAGGWLAGTNAARIALGLEPISLPST-TMMGALFEFISS 401


>gi|94266015|ref|ZP_01289737.1| Gid protein [delta proteobacterium MLMS-1]
 gi|93453444|gb|EAT03863.1| Gid protein [delta proteobacterium MLMS-1]
          Length = 438

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLEK    R G      ++N P+ L P+L+      + LAG
Sbjct: 280 GFQTKMTHPAQQRVLRLIPGLEKAEFARLGSIHRNTFVNAPRVLRPSLQLIARDDILLAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q++G  GY E+AA GL+AG+N+AR
Sbjct: 340 QLSGVEGYVESAAGGLLAGLNAAR 363


>gi|315932331|gb|EFV11274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 93

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I
Sbjct: 12  EAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQI 71

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAAL++L IYIK
Sbjct: 72  SGITPAALDILQIYIK 87


>gi|94264650|ref|ZP_01288432.1| Glucose-inhibited division protein A [delta proteobacterium MLMS-1]
 gi|93454881|gb|EAT05125.1| Glucose-inhibited division protein A [delta proteobacterium MLMS-1]
          Length = 226

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLEK    R G      ++N P+ L P+L+      + LAG
Sbjct: 68  GFQTKMTHPAQQRVLRLIPGLEKAEFARLGSIHRNTFVNAPRVLRPSLQLIARDDILLAG 127

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q++G  GY E+AA GL+AG+N+AR +   +       +   G +I  LT+
Sbjct: 128 QLSGVEGYVESAAGGLLAGLNAARLAGG-EQPTIPPAECAHGALIRHLTT 176


>gi|297566733|ref|YP_003685705.1| gid protein [Meiothermus silvanus DSM 9946]
 gi|296851182|gb|ADH64197.1| gid protein [Meiothermus silvanus DSM 9946]
          Length = 436

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   +++IPGLE   I+R G      Y+N P+ L PT++ ++   LF+ G
Sbjct: 266 GFQTGLKWGDQKLLVQSIPGLEHAEIVRYGVMHRNTYLNAPRLLLPTMQFREYPHLFVCG 325

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
            + G  GY ++AA G +AG+N+AR +  ++      T S +G ++  L            
Sbjct: 326 VLAGVEGYLDSAATGWLAGVNAARLALGMEPTLPPET-SMLGGLVRYLA----------- 373

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           T+  +     +P NA+  L P     G   E+R + + + +Q +
Sbjct: 374 TANPQ---GFQPMNANWGLVPPIKGKGSKTEKRVQMYHRGLQAF 414


>gi|225868565|ref|YP_002744513.1| protein Gid homolog [Streptococcus equi subsp. zooepidemicus]
 gi|259547965|sp|C0MFF9|TRMFO_STRS7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225701841|emb|CAW99295.1| protein Gid homolog [Streptococcus equi subsp. zooepidemicus]
          Length = 444

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ PK L    +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVMHRNSYMDSPKLLTQGFQSRANHRLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEEEPLVFPNTTA 386


>gi|225870565|ref|YP_002746512.1| protein Gid homolog [Streptococcus equi subsp. equi 4047]
 gi|254789177|sp|C0M6C7|TRMFO_STRE4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225699969|emb|CAW93937.1| protein Gid homolog [Streptococcus equi subsp. equi 4047]
          Length = 444

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ PK L    +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVMHRNSYMDSPKLLTQGFQSRANHRLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR   + + + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAARLFKEEEPLVFPNTTA 386


>gi|315284186|ref|ZP_07872090.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria marthii FSL S4-120]
 gi|313612170|gb|EFR86408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria marthii FSL S4-120]
          Length = 96

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 57/87 (65%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P +
Sbjct: 5   IAEQVEIQVKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLS 64

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 65  IAQASRISGVNPADISILLVYIEQGKI 91


>gi|157363547|ref|YP_001470314.1| gid protein [Thermotoga lettingae TMO]
 gi|205830344|sp|A8F516|TRMFO_THELT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157314151|gb|ABV33250.1| gid protein [Thermotoga lettingae TMO]
          Length = 441

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 288 RNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G Q F    L  E L+  +    G  T L    Q + IR IPGLEK  I+R G   + 
Sbjct: 252 RTGKQPFAVVQLRKENLDETLYNIVGFQTRLKWGEQRKIIRLIPGLEKAEIVRYGVMHKN 311

Query: 344 DYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
            YIN +++  P +  K    +F AGQI G  GY E+ A GL   +N  R S
Sbjct: 312 IYINSRKVLDPFMRLKNDRKIFFAGQITGVEGYLESVASGLYVALNVYRIS 362


>gi|313901011|ref|ZP_07834499.1| tRNA:m(5)U-54 methyltransferase [Clostridium sp. HGF2]
 gi|312953969|gb|EFR35649.1| tRNA:m(5)U-54 methyltransferase [Clostridium sp. HGF2]
          Length = 432

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE V+I+R G      Y+  PK L PT +  +   LF AG
Sbjct: 277 GFQTHLKWGEQKRLLSMIPGLENVSIVRYGVMHRNSYLCAPKVLRPTYQHVQRDDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+AG+N A
Sbjct: 337 QLCGVEGYVESAASGLLAGMNMA 359


>gi|322411755|gb|EFY02663.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 448

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T ++     LF AG
Sbjct: 291 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLTETFQSCSNPNLFFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+AR     + + F +T +
Sbjct: 351 QMTGVEGYVESAASGLVAGINAARLFKGEEAMVFPQTTA 389


>gi|66576110|gb|AAY51662.1| mitochondrial MTO1 [Eulemur coronatus]
          Length = 51

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I PGY ++YDY++P+++ P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIHPGYGVQYDYLDPRQIAPSLETHLVQRLFLAG 51


>gi|33865433|ref|NP_896992.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. WH 8102]
 gi|81574825|sp|Q7U7T2|TRMFO_SYNPX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33632602|emb|CAE07414.1| probable glucose inhibited division protein [Synechococcus sp. WH
           8102]
          Length = 461

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 258 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 316

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++ +P+ L PTL+ +  S L  AGQI GT GY  A A G +A
Sbjct: 317 PGLAEAEFVRFGVMHRNTFLESPQLLEPTLQFRSRSSLLAAGQITGTEGYAAAVAGGWLA 376

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR +  L  I    T
Sbjct: 377 GTNAARLARGLAPIDLPAT 395


>gi|329769609|ref|ZP_08261013.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella sanguinis M325]
 gi|328838364|gb|EGF87973.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella sanguinis M325]
          Length = 434

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  T + K+   ++ AG
Sbjct: 280 GFQTHLKWGEQKRIINLIPGLENANIVRYGVMHRNTYLNSPQLLEKTYKLKEEKNIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM---IDDLTSK 418
           Q+ G  GY E+AA G+VA +N+    N+ D      T++ IG M   I D TSK
Sbjct: 340 QMTGVEGYVESAASGIVAALNAL--YNQEDKQIIFPTETMIGAMANYIVDNTSK 391



 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           VIVIG G AG EAA   AK G +  L           HKT     + C+ ++        
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVNVDLYEMRPKKMTPAHKTQNFAELVCSNSLRANNITNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADA  +          P+  G     DR+ +   +   I + 
Sbjct: 65  VGLLKEEMRRLDSLIIKCADATQV----------PS--GGALAVDRDKFSEMITETIKNH 112

Query: 115 ENLDVIQGEV 124
            N++VI+ E+
Sbjct: 113 PNINVIEEEI 122


>gi|313621867|gb|EFR92548.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria innocua FSL J1-023]
          Length = 101

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 57/87 (65%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P +
Sbjct: 10  IAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLS 69

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 70  IAQASRISGVNPADISILLVYIEQGKI 96


>gi|313616450|gb|EFR89360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria innocua FSL S4-378]
          Length = 103

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 57/87 (65%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P +
Sbjct: 12  IAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLS 71

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QAS+I G+ PA +++LL+YI++  +
Sbjct: 72  IAQASRISGVNPADISILLVYIEQGKI 98


>gi|329727205|gb|EGG63661.1| putative tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 210

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE V+I+R G      +IN P  L    E      +  AG
Sbjct: 53  GFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAG 112

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 113 QMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPR-ETMIGSMA-------------YY 158

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 159 ISHAKNNKNFQPMNANFGLLP 179


>gi|307704915|ref|ZP_07641806.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK597]
 gi|307621529|gb|EFO00575.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK597]
          Length = 444

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G+VAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGVVAGINAAR 371


>gi|293400523|ref|ZP_06644668.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305549|gb|EFE46793.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 430

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + +  IPGLE V+I+R G      Y+  PK L PT +      LF AG
Sbjct: 275 GFQTHLKWGEQKRILSMIPGLEHVSIVRYGVMHRNSYLCAPKVLRPTYQHITRDDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG+N A        +    T   IG M++ +T
Sbjct: 335 QLTGVEGYVESAASGLLAGLNMANLIRGKAVVTLPST-CVIGSMVNYIT 382


>gi|50365058|ref|YP_053483.1| tRNA (uracil-5-)-methyltransferase Gid [Mesoplasma florum L1]
 gi|81827314|sp|Q6F1M4|TMFO1_MESFL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|50363614|gb|AAT75599.1| glucose inhibited division protein C [Mesoplasma florum L1]
          Length = 442

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + ++T+PGLE +NI+R G   +  YIN PK L  +L+ K+   +F AG
Sbjct: 279 GFQTNIKWPEQKRILQTLPGLENLNIVRFGVMHKNYYINSPKLLNRSLQVKRNKNIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGIN 388
           QI G  GY E+A+ G++  IN
Sbjct: 339 QITGVEGYIESASSGILTAIN 359


>gi|4140576|gb|AAD04123.1| glucose-inhibited division protein A [Chlamydia trachomatis]
          Length = 42

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 40 TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
          TI  +SCNPA+GG+GKGH+VREIDAL G+M  + D +GI
Sbjct: 4  TIAKLSCNPAVGGIGKGHIVREIDALGGIMAEITDLSGI 42


>gi|319937630|ref|ZP_08012034.1| tRNA (Uracil-5-)-methyltransferase gid [Coprobacillus sp. 29_1]
 gi|319807272|gb|EFW03884.1| tRNA (Uracil-5-)-methyltransferase gid [Coprobacillus sp. 29_1]
          Length = 432

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE   I+R G      +I +P+ L PT +  +   LF AG
Sbjct: 275 GFQTHLKWPEQDRIIHMIPGLENAKIVRYGVMHRNCFICSPRYLKPTYQFIEREDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           Q+ G  GY E+A  G+VAG+N  R  +  + + F R
Sbjct: 335 QMTGVEGYVESAQSGMVAGMNMVRYLHNQELLVFPR 370


>gi|66576092|gb|AAY51653.1| mitochondrial MTO1 [Macaca fascicularis]
          Length = 51

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHMVQRLFFAG 51


>gi|304404237|ref|ZP_07385899.1| gid protein [Paenibacillus curdlanolyticus YK9]
 gi|304347215|gb|EFM13047.1| gid protein [Paenibacillus curdlanolyticus YK9]
          Length = 439

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN P+ L  T + K    LF AG
Sbjct: 281 GFQTHLKWGEQKRVFSLIPGLENAEFVRFGVMHRNTFINSPRLLRSTYQFKARETLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AG+N+ R +  L+ +     D+ +G M   +T+
Sbjct: 341 QMTGVEGYVESAASGLIAGLNAGRLARGLEPVELP-ADTTLGSMAQYITT 389


>gi|66576112|gb|AAY51663.1| mitochondrial MTO1 [Nycticebus coucang]
          Length = 51

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+ + P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRHITPSLETHLVQRLFLAG 51


>gi|309805935|ref|ZP_07699965.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners LactinV
           03V1-b]
 gi|308167674|gb|EFO69823.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners LactinV
           03V1-b]
          Length = 223

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 65  GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAG 124

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 125 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 173


>gi|322420081|ref|YP_004199304.1| gid protein [Geobacter sp. M18]
 gi|320126468|gb|ADW14028.1| gid protein [Geobacter sp. M18]
          Length = 436

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      +IN P+ L  T + K    +  AG
Sbjct: 279 GFQTKLTWPEQKRIFRMIPGLEEAQFLRLGSMHRNTFINAPQLLLATCQLKSDPRILFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+A+ G VAG+N+AR +   + I     ++ IG +   +T+
Sbjct: 339 QITGVEGYVESASSGFVAGVNAARLAKGAELIV-PPAETAIGALARHITN 387



 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 11/124 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
            + VIGGG AGCEAA  AAK G    L   K          P +  L   + +R  D+L+
Sbjct: 4   QITVIGGGLAGCEAAWQAAKRGVKVRLYEMKPKRYSEAHHLPGLSELVCSNSLRG-DSLE 62

Query: 67  GLMGRVADAAGIQFRVLN---VKKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVI 120
             +G + +    + R LN   ++   A + P   A   DREL+   + + I    N++V+
Sbjct: 63  NAVGLLKE----ELRRLNSLFLEGAEATKVPAGGALAVDRELFSEYITKRIEEHPNIEVL 118

Query: 121 QGEV 124
             E+
Sbjct: 119 HEEI 122


>gi|66576114|gb|AAY51664.1| mitochondrial MTO1 [Galago moholi]
          Length = 51

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+ + P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRHISPSLETHLVQRLFLAG 51


>gi|313892679|ref|ZP_07826262.1| tRNA:m(5)U-54 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442770|gb|EFR61179.1| tRNA:m(5)U-54 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 438

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 150/419 (35%), Gaps = 64/419 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIHVDLYEMRPLKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  L+   ADA  +          PA  G     DR L+   + +++  
Sbjct: 65  AVGLLKEEMRRLGSLIMECADATAV----------PA--GGALAVDRHLFSEMVTKKVKG 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV     E                  TV+  +G      +   K+K   G 
Sbjct: 113 HPNITVHNEEVTEIPAE-----------------GTVIFASGPLTSEALG-DKIKALTGE 154

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            G          F  +D     + T      D K     + +K  AD    P +    K+
Sbjct: 155 TG----------FYFYD-AAAPIVTAESLNYD-KVFAASRYDKGDADYLNCPMTEEEYKV 202

Query: 234 TNRQIECG--ITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVRFGER 288
             +++     +   + E   I  E      I +    D   YGP     + DK  R  E 
Sbjct: 203 FWQELTTAEAVQPKDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--RTNEE 259

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           +   + L  E     +    G  T L    Q +    IPGLE    IR G      YIN 
Sbjct: 260 SYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFIRYGVMHRNTYINS 319

Query: 349 KELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            EL     + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +T +
Sbjct: 320 PELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVERYLEERSFIDFPKTTA 378


>gi|303240292|ref|ZP_07326811.1| gid protein [Acetivibrio cellulolyticus CD2]
 gi|302592202|gb|EFL61931.1| gid protein [Acetivibrio cellulolyticus CD2]
          Length = 442

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN PK L  +   +K   L+ AG
Sbjct: 279 GFQTRLKWPEQKRVFGLIPGLENAEFVRYGVMHRNTFINSPKVLEASYRMRKYQNLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           Q+ G  GY E+A+ GLVAGIN+A      + + F R+ + IG + + ++ + V
Sbjct: 339 QMTGVEGYVESASSGLVAGINAAMNFLGKEDVLFPRSTA-IGALSNYISDQNV 390


>gi|159903126|ref|YP_001550470.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9211]
 gi|205830319|sp|A9BEK6|TRMFO_PROM4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|159888302|gb|ABX08516.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9211]
          Length = 474

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 165/437 (37%), Gaps = 68/437 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +N+S  + ++G G AG EAA   A+ G    L           H T+    + C+ + G 
Sbjct: 1   MNQSDSITIVGAGLAGSEAAWQVARAGIHVELYEMRPLKASPAHHTADFAELVCSNSFGA 60

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           L      G L  E+  L+  +   AD   +          PA  G     DR  +   + 
Sbjct: 61  LSADRAAGLLQEELRYLNSFVINSADKHSV----------PA--GGALAVDRSRFSADIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            +I S   + V + E+    +E+ I              ++  LT+      + +   ++
Sbjct: 109 EKITSHPLITVKRVELQKLPSEEQITV-----------IASGPLTSKNLAEDLKNFTGIQ 157

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP  +  +  ++F F   R   G     D   I     +KQ+        SF
Sbjct: 158 ECHFFDAASPIIAGESIDLRFAFRGSRYDKG-----DADYINCPMNKKQY-------LSF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             + I   Q E      +          I+  A    D   YGP     + D   R+G+ 
Sbjct: 206 RDELIKAEQAELKDFEKSSSNFFEGCLPIEELARRGEDTMRYGPLKPIGLWDP--RWGDL 263

Query: 289 NGHQIFLEP-------------EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           N  +I  E              EG   ++V   G  T L    Q + +R IPGL+  + +
Sbjct: 264 NNREIRREKRAYAVVQLRQEDREGKLWNLV---GFQTNLKWGEQKRVLRMIPGLQNADFV 320

Query: 336 RPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      ++ +PK L  +L+ +K + L  AGQI GT GY  A A G +AG N+A  + 
Sbjct: 321 RFGVMHRNTFLESPKLLNASLQFRKRAKLLAAGQITGTEGYVAAVAGGWLAGTNAALLAM 380

Query: 395 KLDCICFSRTDSYIGVM 411
               I F R ++ IG +
Sbjct: 381 GHKPIIFPR-NTMIGAL 396


>gi|66576088|gb|AAY51651.1| mitochondrial MTO1 [Macaca nemestrina]
 gi|66576090|gb|AAY51652.1| mitochondrial MTO1 [Macaca sylvanus]
 gi|66576094|gb|AAY51654.1| mitochondrial MTO1 [Macaca mulatta]
 gi|66576102|gb|AAY51658.1| mitochondrial MTO1 [Callithrix jacchus]
 gi|66576104|gb|AAY51659.1| mitochondrial MTO1 [Saguinus fuscicollis]
          Length = 51

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|257430599|ref|ZP_05606981.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278727|gb|EEV09346.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 289

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE V+I+R G      +IN P  L    E      +  AG
Sbjct: 132 GFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAG 191

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 192 QMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPR-ETMIGSMA-------------YY 237

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 238 ISHAKNNKNFQPMNANFGLLP 258


>gi|325290383|ref|YP_004266564.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965784|gb|ADY56563.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 444

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 5/119 (4%)

Query: 288 RNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G Q F    L  E L   ++   G  T L    Q +  R IPGLE     R G     
Sbjct: 253 RTGKQPFAVVQLRKENLEGSLLNLVGFQTHLKWGEQKRVFRMIPGLENAEFARYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
            ++N PK L      +    +F AGQI G  GY E+AA GL+AGIN+ R    L+ + F
Sbjct: 313 TFLNSPKVLQADFRLRNKPEIFFAGQITGVEGYVESAASGLLAGINAFRFLRGLETLVF 371


>gi|313889372|ref|ZP_07823020.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122204|gb|EFR45295.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 444

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++    LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRANENLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           Q+ G  GY E+AA GLVAGIN+ +K      + F  T +
Sbjct: 348 QMTGVEGYVESAASGLVAGINAVKKFKGQAEVIFPETTA 386


>gi|78222113|ref|YP_383860.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter metallireducens
           GS-15]
 gi|123572455|sp|Q39X89|TRMFO_GEOMG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78193368|gb|ABB31135.1| Gid protein [Geobacter metallireducens GS-15]
          Length = 434

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
           G  T + YP           Q +  R IPGLE    +R G      +IN P  L PT + 
Sbjct: 279 GFQTKLTYPE----------QRRIFRMIPGLENAEFVRLGSMHRNTFINAPALLAPTFQL 328

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           K  + +  AGQI G  GY E+A  G +AG+N+AR
Sbjct: 329 KGDARILFAGQITGVEGYVESAGSGFLAGVNAAR 362



 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 25/140 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGL----G 54
           + +IGGG AGCEA   AA+ G    L           H  + +  + C+ ++ G      
Sbjct: 5   ITIIGGGLAGCEAVWQAAERGVRVTLHEMKPHAFSPAHHLAGLAELVCSNSLRGESLENA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+     L+   ADA  +          PA  G     DREL+   +   I + 
Sbjct: 65  VGLLKEELRRAGSLIMAAADATRV----------PA--GGALAVDRELFSAFVTERIENH 112

Query: 115 ENLDVIQGEVAGFNTEKNII 134
             +D+++GEVA   +E  +I
Sbjct: 113 PLVDLMRGEVADIPSEDIVI 132


>gi|257427966|ref|ZP_05604364.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257274807|gb|EEV06294.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 65-1322]
          Length = 351

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE V+I+R G      +IN P  L    E      +  AG
Sbjct: 194 GFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAG 253

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ G  GY E+AA GLVAGIN A K      + F R ++ IG M               +
Sbjct: 254 QMTGVEGYVESAASGLVAGINLAHKILGKGEVVFPR-ETMIGSMA-------------YY 299

Query: 428 TSRAEYRISLRPDNADNRLTP 448
            S A+   + +P NA+  L P
Sbjct: 300 ISHAKNNKNFQPMNANFGLLP 320


>gi|312873931|ref|ZP_07733967.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2052A-d]
 gi|311090480|gb|EFQ48888.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2052A-d]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|241889922|ref|ZP_04777220.1| tRNA:M(5)U-54 methyltransferase [Gemella haemolysans ATCC 10379]
 gi|241863544|gb|EER67928.1| tRNA:M(5)U-54 methyltransferase [Gemella haemolysans ATCC 10379]
          Length = 434

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  T   K+   ++ AG
Sbjct: 280 GFQTHLKWGEQKRIINMIPGLENANIVRYGVMHRNTYLNSPQLLEKTYRLKEEKNIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM---IDDLTSK 418
           Q+ G  GY E+AA G+VA +N+   +   + +    T++ IG M   I D TSK
Sbjct: 340 QMTGVEGYVESAASGIVAALNALYNTEDKEVVF--PTETMIGAMANYIVDNTSK 391



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           VIVIG G AG EAA   AK G    L           HKT   G + C+ ++        
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVKVDLYEMRPKKMTPAHKTQNFGELVCSNSLRANNVTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ + ADA  +          PA  G     DR+ +   +   I + 
Sbjct: 65  VGLLKEEMRMLDSIIIKCADATQV----------PA--GGALAVDRDKFSEMITETIKNH 112

Query: 115 ENLDVIQGEV 124
            N++VI  E+
Sbjct: 113 PNINVIGEEL 122


>gi|312871380|ref|ZP_07731475.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 3008A-a]
 gi|311093033|gb|EFQ51382.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 3008A-a]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|309804175|ref|ZP_07698253.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|312875488|ref|ZP_07735491.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2053A-b]
 gi|315653523|ref|ZP_07906444.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus iners ATCC 55195]
 gi|308163758|gb|EFO66027.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|311088999|gb|EFQ47440.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2053A-b]
 gi|315489214|gb|EFU78855.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|329921312|ref|ZP_08277750.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN 1401G]
 gi|328934604|gb|EGG31108.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN 1401G]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|320527483|ref|ZP_08028664.1| tRNA:M(5)U-54 methyltransferase [Solobacterium moorei F0204]
 gi|320132196|gb|EFW24745.1| tRNA:M(5)U-54 methyltransferase [Solobacterium moorei F0204]
          Length = 431

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      YI +P  L  T + K    LF AG
Sbjct: 275 GFQTHLKWGEQKRIIQMIPGLENAEIVRYGVMHRNTYICSPIYLRETYQFKDRDDLFFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G++AGIN AR
Sbjct: 335 QMTGVEGYVESAASGMLAGINMAR 358


>gi|312872381|ref|ZP_07732451.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092204|gb|EFQ50578.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2062A-h1]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|325912870|ref|ZP_08175248.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325477863|gb|EGC80997.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|325912026|ref|ZP_08174428.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 143-D]
 gi|325476211|gb|EGC79375.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 143-D]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|259500642|ref|ZP_05743544.1| glucose-inhibited division protein [Lactobacillus iners DSM 13335]
 gi|302191331|ref|ZP_07267585.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners AB-1]
 gi|259168026|gb|EEW52521.1| glucose-inhibited division protein [Lactobacillus iners DSM 13335]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|309809274|ref|ZP_07703143.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170387|gb|EFO72411.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AG
Sbjct: 279 GFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCKNLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS
Sbjct: 339 QMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITS 387


>gi|318040166|ref|ZP_07972122.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CB0101]
          Length = 463

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR   R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 257 IGLWDPRWG-DVNDRDVRRANRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMI 315

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE    +R G      ++  P+ L PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 316 PGLENAEFVRFGVMHRNTFLEAPQLLDPTLQFRQRPTLLAAGQITGTEGYAAAVAGGWLA 375

Query: 386 GINSAR 391
           G N+AR
Sbjct: 376 GTNAAR 381


>gi|225861168|ref|YP_002742677.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|254789183|sp|C1CRV5|TRMFO_STRZT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225726600|gb|ACO22451.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327389220|gb|EGE87565.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA04375]
          Length = 444

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IP LE    +R G      Y++ P  L  T  +KK   LF AG
Sbjct: 288 GFQTHLKWGEQKRVFQMIPSLENAEFVRYGVMHRNSYMDSPNLLEQTYRSKKQPNLFFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GLVAGIN+AR
Sbjct: 348 QMTGVEGYVESAASGLVAGINAAR 371


>gi|293374712|ref|ZP_06621020.1| tRNA:M(5)U-54 methyltransferase [Turicibacter sanguinis PC909]
 gi|325840601|ref|ZP_08167082.1| tRNA:m(5)U-54 methyltransferase [Turicibacter sp. HGF1]
 gi|292646626|gb|EFF64628.1| tRNA:M(5)U-54 methyltransferase [Turicibacter sanguinis PC909]
 gi|325490250|gb|EGC92583.1| tRNA:m(5)U-54 methyltransferase [Turicibacter sp. HGF1]
          Length = 432

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + ++ IPGLE   I+R G      +IN P  L  T + K    LF AG
Sbjct: 277 GFQTHLKWGEQKRIVQMIPGLENAEIVRYGVMHRNSFINSPVLLNATYQFKAREDLFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G+VAGIN A+
Sbjct: 337 QLTGVEGYVESAASGMVAGINMAK 360


>gi|307297543|ref|ZP_07577349.1| gid protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916803|gb|EFN47185.1| gid protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 431

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            E I  S I   D   +GP     + D I   G+     + L  E L+  ++   G  T 
Sbjct: 226 FEEIARSGI---DALRFGPMKPVGLIDPIT--GKEPYAVVQLRKENLSGSLLGIVGFQTR 280

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGT 372
           L    Q + +  IP L  V+IIR G      +++ P+ L P L+++   GLF AGQI+G 
Sbjct: 281 LKWREQKRILSLIPALRNVDIIRYGVMHRNTFLDSPRLLNPDLQSRNHKGLFFAGQISGL 340

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
            GY EA   G +A IN+ R       +      + IG +I+ +T  G
Sbjct: 341 EGYVEAIVSGRLAAINADRYVRGKQTV-IPPVGTMIGGLINHITVSG 386


>gi|260890747|ref|ZP_05902010.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859300|gb|EEX73800.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 136

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 7/117 (5%)

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-----RLQIESSYAAYTGRQM-IEAKEI 556
           T  E L  P  + Q++  I        +L  +     ++++++ Y  Y  + + I  K+ 
Sbjct: 16  TLKEILRRPKVTYQDIKYIAEIIENVPNLNFDDETEYQIEVQTKYEGYIAKAIQIMEKQQ 75

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           K ++K+ IPK+FDY ++  ++ E K++L   +P+N+ QAS++ G+TPA +++LL+Y+
Sbjct: 76  KLDDKK-IPKNFDYDNMKGITREAKQRLKENRPYNVGQASRMSGVTPADISVLLMYL 131


>gi|329766927|ref|ZP_08258455.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella haemolysans M341]
 gi|328837652|gb|EGF87277.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella haemolysans M341]
          Length = 434

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  T   K+   ++ AG
Sbjct: 280 GFQTHLKWGEQKRIINMIPGLENANIVRYGVMHRNTYLNSPQLLEKTYRLKEEKNIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM---IDDLTSK 418
           Q+ G  GY E+AA G+VA +N+   +   + +    T++ IG M   I D TSK
Sbjct: 340 QMTGVEGYVESAASGIVAALNALYNTEGREVVF--PTETMIGAMANYIVDSTSK 391



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           VIVIG G AG EAA   AK G    L           HKT   G + C+ ++        
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVKVDLYEMRPKKMTPAHKTQNFGELVCSNSLRANNITNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ + ADA  +          PA  G     DR+ +   +   I + 
Sbjct: 65  VGLLKEEMRMLDSIIIKCADATQV----------PA--GGALAVDRDKFSEMITETIKNH 112

Query: 115 ENLDVIQGEV 124
            N++VI  E+
Sbjct: 113 PNINVIGEEL 122


>gi|66576108|gb|AAY51661.1| mitochondrial MTO1 [Lemur catta]
          Length = 51

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKMIHPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|317050677|ref|YP_004111793.1| gid protein [Desulfurispirillum indicum S5]
 gi|316945761|gb|ADU65237.1| gid protein [Desulfurispirillum indicum S5]
          Length = 438

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           GER    + L  E LN +     G  T L +  Q +  R IPGLE  N +R G      Y
Sbjct: 255 GERFHAVVQLRRESLNDNAWNLVGFQTKLIQSEQKRVFRLIPGLEAANFLRLGSMHRNTY 314

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           IN P+ L      K   GL+LAGQI G  GY E+ A G VA ++
Sbjct: 315 INGPRFLEADYRVKDHPGLWLAGQITGVEGYIESVASGHVAALS 358


>gi|323697759|ref|ZP_08109671.1| gid protein [Desulfovibrio sp. ND132]
 gi|323457691|gb|EGB13556.1| gid protein [Desulfovibrio desulfuricans ND132]
          Length = 440

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R GER    + L  E  +       G  T L    Q +  R IPGLE    +R G     
Sbjct: 258 RTGERPFAIVQLRTENADKTAFNLVGFQTKLKYPEQKRIFRMIPGLENAEFLRLGSIHRN 317

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P+ L  TL+ K   G +LAGQI G  GY E+AA GL  G++  R+  + + +   
Sbjct: 318 TYVNAPEVLDETLQLKNRPGTYLAGQITGVEGYLESAACGLWLGLSLGRRL-RGEAVIDP 376

Query: 403 RTDSYIGVMIDDLTSK 418
             ++ +G +++ L +K
Sbjct: 377 PVETALGALMNHLRTK 392


>gi|313892545|ref|ZP_07826132.1| tRNA:m(5)U-54 methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313118942|gb|EFR42147.1| tRNA:m(5)U-54 methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 431

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YIN  EL   T+ETKK  GLF AG
Sbjct: 279 GFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNTYINTPELLNETMETKKREGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           Q+ G  GY E+AA G+VA  ++  +
Sbjct: 339 QMTGVEGYIESAASGIVAAYSATAR 363


>gi|189220272|ref|YP_001940912.1| tRNA:m(5)U-54 MTase Gid, NAD(FAD)-utilizing enzyme
           [Methylacidiphilum infernorum V4]
 gi|189187130|gb|ACD84315.1| tRNA:m(5)U-54 MTase Gid, NAD(FAD)-utilizing enzyme
           [Methylacidiphilum infernorum V4]
          Length = 445

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L  + Q +  R IP L+  + IR G      +IN P+ L PTL+ +    L  AG
Sbjct: 285 GFQTNLTFKEQDRIFRIIPALKNAHFIRYGQLHRNTFINSPRVLLPTLQFRANPLLLFAG 344

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY    A GLVAGIN+AR     + + F R  + IG ++  +T
Sbjct: 345 QLAGCEGYAGNIASGLVAGINAARIFQGREPVVFPR-QTMIGELLWYIT 392



 Score = 43.9 bits (102), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           ++V+GGG AG EAA   A+      L           H T  +  + C+ ++G       
Sbjct: 9   IVVVGGGLAGSEAAWQIAQKNIPVFLYEMRPFEPTGAHSTGHLAEIVCSNSLGSNLLSNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L++E+   + L+ R+AD+  +          PA  G     DRE + LA+ R +L  
Sbjct: 69  SGLLLQELRIFNSLLVRIADSCAL----------PA--GKALAVDRERFSLAVTRHLLKH 116

Query: 115 ENLDVIQGEV 124
             + VI+ E+
Sbjct: 117 PLITVIRKEL 126


>gi|119511325|ref|ZP_01630439.1| Gid protein [Nodularia spumigena CCY9414]
 gi|119464031|gb|EAW44954.1| Gid protein [Nodularia spumigena CCY9414]
          Length = 437

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           I+  A    D   YGP     + D   R GER    + L  E     +    G  T L  
Sbjct: 231 IEEQAHRGEDTMRYGPLKPVGLSDN--RTGERPYAVVQLRQEDKAGQLWNMVGFQTNLRW 288

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGY 375
             Q +  R IPGLE    +R G      ++N P+ +  TL+ K+   L  AGQ+ GT GY
Sbjct: 289 GEQKRVFRLIPGLENAEFVRLGVMHRNTFLNAPQLMHSTLQFKQRPTLLAAGQLIGTEGY 348

Query: 376 EEAAAQGLVAGINSAR 391
             AAA G +AG N+AR
Sbjct: 349 TAAAADGWLAGTNAAR 364


>gi|224541325|ref|ZP_03681864.1| hypothetical protein CATMIT_00485 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525762|gb|EEF94867.1| hypothetical protein CATMIT_00485 [Catenibacterium mitsuokai DSM
           15897]
          Length = 430

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  +I+R G      Y N P  L PT + K    LF AG
Sbjct: 276 GFQTHLKWGEQDRIIHMIPGLENASIVRYGIMHRNCYFNSPTYLNPTYQFKNREDLFFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           Q+ G  GY E+A  G+VAG N  R     + + + R
Sbjct: 336 QMTGVEGYVESAQSGIVAGKNMVRYLKGEELLTYPR 371


>gi|66576098|gb|AAY51656.1| mitochondrial MTO1 [Colobus guereza]
          Length = 51

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           ++Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   DLQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|78213211|ref|YP_381990.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9605]
 gi|123577957|sp|Q3AIZ7|TRMFO_SYNSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78197670|gb|ABB35435.1| gid protein [Synechococcus sp. CC9605]
          Length = 456

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 253 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 311

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++ +P+ L PTL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 312 PGLGQAEFVRFGVMHRNTFLESPQLLQPTLQFRQRPNLLAAGQITGTEGYAAAVAGGWLA 371

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR +  L+ I    T
Sbjct: 372 GTNAARLALGLEPIDLPAT 390


>gi|238926946|ref|ZP_04658706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Selenomonas flueggei ATCC 43531]
 gi|238885180|gb|EEQ48818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Selenomonas flueggei ATCC 43531]
          Length = 440

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     +E  I   GER    + L  +     +    G  T L    Q +  R 
Sbjct: 239 DTLLYGPLKPVGLEHPIT--GERPYAVVQLRQDNAAGSIYNIVGFQTHLKWPEQRRVFRM 296

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGL     +R G      +I+ P+ L PT +      L  AGQ+ G  GY E+AA GLV
Sbjct: 297 IPGLAAAEFLRYGVMHRNSFISAPRHLRPTFQYAGNDRLLFAGQMTGVEGYVESAASGLV 356

Query: 385 AGINSARKSNKLDCICFSRTDSY 407
           AG N+AR +     + F  +  +
Sbjct: 357 AGKNAARLARGESPVLFPTSTCH 379


>gi|291295960|ref|YP_003507358.1| gid protein [Meiothermus ruber DSM 1279]
 gi|290470919|gb|ADD28338.1| gid protein [Meiothermus ruber DSM 1279]
          Length = 443

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q   +++IPGLE   I+R G      Y+  P+ + PTL+ +    L ++G
Sbjct: 277 GFQTGLKWGDQKLVVQSIPGLENAEIVRYGVMHRNTYLCAPRLIEPTLQFRAHPNLLVSG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
            + G  GY E+AA G +AG+N+AR +   + +      + +G ++  L S          
Sbjct: 337 VLCGVEGYLESAATGFLAGLNAARLAQGQEALVPPEA-TMLGGLVRYLASANP------- 388

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
                   + +P NA+  L P  +  G   E+R + F + + E  F   L +S+ L S+ 
Sbjct: 389 -------DNFQPMNANWGLVPAEVGKGKKSEKRARMFHRGLAE--FRAWLARSVGLVSEE 439

Query: 488 L 488
           +
Sbjct: 440 I 440



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G +G EAA  AA+LGA   L           H+T     + C+ ++GG G    
Sbjct: 4   VHVIGAGLSGAEAAFTAARLGAQVRLYEMRPRRMTPAHQTGHFAELVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ A   L+ + AD      RV      PA  G     +RE +   + R + + 
Sbjct: 64  KGLLQAELRAAGSLVMQAAD----HNRV------PA--GGALAVEREGFSQEITRRLEAH 111

Query: 115 ENLDVIQGEV 124
            N++V++ E+
Sbjct: 112 PNIEVVREEL 121


>gi|320334843|ref|YP_004171554.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
           [Deinococcus maricopensis DSM 21211]
 gi|319756132|gb|ADV67889.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-meth yltransferasetrmFO
           [Deinococcus maricopensis DSM 21211]
          Length = 462

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   ++ IPGLE   I+R G      Y+N P+ L  T++ +      +AG
Sbjct: 276 GFQTGLKWGDQKAVVQLIPGLENAEIVRYGVMHRNTYLNAPEVLTETMQLRADPEKLVAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
            + GT GY E+AA G +AG+N+AR +  L+ +C
Sbjct: 336 VLAGTEGYLESAATGWLAGLNAARLAQGLEPVC 368


>gi|309800198|ref|ZP_07694381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus infantis SK1302]
 gi|308116169|gb|EFO53662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus infantis SK1302]
          Length = 141

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    +R G      Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLV
Sbjct: 2   IPGLENAEFVRYGVMHRNSYMDSPNFLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLV 61

Query: 385 AGINSAR 391
           AGIN+AR
Sbjct: 62  AGINAAR 68


>gi|225571869|ref|ZP_03780739.1| hypothetical protein CLOHYLEM_07843 [Clostridium hylemonae DSM
           15053]
 gi|225159474|gb|EEG72093.1| hypothetical protein CLOHYLEM_07843 [Clostridium hylemonae DSM
           15053]
          Length = 127

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKF----SSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
           T  E +  P+ S + L  I      F       +IE++ I   Y  Y  RQ  + ++ K 
Sbjct: 11  TLAELIRRPELSYEALRPIDKKRPVFPEGLEEEIIEQVNISIKYDGYIKRQEKQVEQFKK 70

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            EKR IP++ DY  + +L  E  +KL   +P ++ QAS+I G++PA +++LL+Y+
Sbjct: 71  LEKRKIPENIDYDDIKSLRIEAVQKLKEYRPVSIGQASRISGVSPADISVLLVYL 125


>gi|281417193|ref|ZP_06248213.1| gid protein [Clostridium thermocellum JW20]
 gi|281408595|gb|EFB38853.1| gid protein [Clostridium thermocellum JW20]
          Length = 436

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P  L  T   KK   ++ AG
Sbjct: 279 GFQTRLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTFINSPVLLDATYCLKKSPNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           QI G  GY E+A+ G+VAGIN+A      D + F ++ + IG +
Sbjct: 339 QITGVEGYVESASSGMVAGINAAMDFLGKDRVVFPKSTA-IGAL 381



 Score = 40.8 bits (94), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 51/128 (39%), Gaps = 25/128 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AGCEAA   AK G    L           H   T   + C+ ++         G
Sbjct: 7   VIGAGLAGCEAAWQIAKRGIKVKLFEMKPKKFSPAHHMETFAELVCSNSLRSNQLENAVG 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++ + ADAA +          PA  G     DR  +   +   I   EN
Sbjct: 67  LLKEEMRLLDSIIMKCADAAQV----------PA--GGALAVDRTKFSQMVTELIKQNEN 114

Query: 117 LDVIQGEV 124
           ++VI  EV
Sbjct: 115 IEVINEEV 122


>gi|125972982|ref|YP_001036892.1| gid protein [Clostridium thermocellum ATCC 27405]
 gi|256004779|ref|ZP_05429754.1| gid protein [Clostridium thermocellum DSM 2360]
 gi|171769985|sp|A3DCM0|TRMFO_CLOTH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|125713207|gb|ABN51699.1| gid protein [Clostridium thermocellum ATCC 27405]
 gi|255991229|gb|EEU01336.1| gid protein [Clostridium thermocellum DSM 2360]
 gi|316940782|gb|ADU74816.1| gid protein [Clostridium thermocellum DSM 1313]
          Length = 436

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P  L  T   KK   ++ AG
Sbjct: 279 GFQTRLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTFINSPVLLDATYCLKKSPNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           QI G  GY E+A+ G+VAGIN+A      D + F ++ + IG +
Sbjct: 339 QITGVEGYVESASSGMVAGINAAMDFLGKDRVVFPKSTA-IGAL 381



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 25/128 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AGCEAA   AK G    L           H   T   + C+ ++         G
Sbjct: 7   VIGAGLAGCEAAWQIAKRGIKVKLFEMKPKKFSPAHHMETFAELVCSNSLRSNQLENAVG 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L+ ++ + ADAA +          PA  G     DR  +   +   I   EN
Sbjct: 67  LLKEEMRLLNSIIMKCADAAQV----------PA--GGALAVDRTKFSQMVTELIKQNEN 114

Query: 117 LDVIQGEV 124
           ++VI  EV
Sbjct: 115 IEVINEEV 122


>gi|332981424|ref|YP_004462865.1| gid protein [Mahella australiensis 50-1 BON]
 gi|332699102|gb|AEE96043.1| gid protein [Mahella australiensis 50-1 BON]
          Length = 440

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL     +R G      YI+ P  L PT + +    +  AG
Sbjct: 275 GFQTHLKWGEQQRVFRLIPGLGNAEFVRYGVMHRNTYIHSPHLLLPTYQLRDKPNILFAG 334

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           QI G  GY E+A+ GLVAGIN+A
Sbjct: 335 QITGVEGYVESASSGLVAGINAA 357


>gi|220903788|ref|YP_002479100.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868087|gb|ACL48422.1| gid protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 455

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 77/181 (42%), Gaps = 23/181 (12%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E  N+D     G  T L +  Q +  R +PGLEK    R G     
Sbjct: 270 RTGRRPWAILQLRAENANSDTCNLVGCQTKLTQGEQARVFRLVPGLEKAEFARFGSMHRN 329

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P  L   L  K   G++LAGQI G  GY E+AA GL   +    ++  +D +   
Sbjct: 330 TYVNAPHVLDADLSLKARPGIYLAGQITGVEGYVESAASGLWLALLLDARARGID-LERP 388

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
             +S  G ++  L +     P + F          +P NA   L P       +GER +K
Sbjct: 389 PAESAFGALLGHLQT-----PAKRF----------QPSNAHFGLMPD------LGERARK 427

Query: 463 R 463
           +
Sbjct: 428 K 428


>gi|167951230|ref|ZP_02538304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 77

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +  +  E   +P DFDY  +  LS E++EK    +P  L QA +I G+TP
Sbjct: 3   GYIERQRDEIERQRNNEAVQLPHDFDYDKVCGLSAEVREKFQRHRPETLGQAGRIPGITP 62

Query: 604 AALNLLLIYIKKNT 617
           AAL+LLLI++K+ +
Sbjct: 63  AALSLLLIHLKRRS 76


>gi|332866929|ref|ZP_08437270.1| hypothetical protein HMPREF0020_00881 [Acinetobacter baumannii
          6013113]
 gi|332734352|gb|EGJ65478.1| hypothetical protein HMPREF0020_00881 [Acinetobacter baumannii
          6013113]
          Length = 49

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNP
Sbjct: 5  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNP 49


>gi|302787479|ref|XP_002975509.1| hypothetical protein SELMODRAFT_415635 [Selaginella moellendorffii]
 gi|300156510|gb|EFJ23138.1| hypothetical protein SELMODRAFT_415635 [Selaginella moellendorffii]
          Length = 684

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 43/177 (24%)

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           +Q RVLN  KGPAV   R Q D+  +   M++ + + ENL         F  E  +   +
Sbjct: 492 LQRRVLNRSKGPAVWALRAQTDKREHAREMKKVVETTENL---------FIRESMVTEVL 542

Query: 138 VMQDNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
           V +++ + R  T          VVLTT T + G I +G+  +  G  G+           
Sbjct: 543 VGRNDDVERVGTFFGVSFFAPAVVLTTRTLMNGKIWVGRKSMSTGGAGE----------- 591

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                   LKTGTPAR+D  T+   + E Q    +LI      D +  + +E G  R
Sbjct: 592 --------LKTGTPARVDVWTVDTSRLESQPETHKLI-----KDNLKLQHMEDGWNR 635


>gi|126696561|ref|YP_001091447.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9301]
 gi|205830315|sp|A3PDM1|TRMFO_PROM0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|126543604|gb|ABO17846.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9301]
          Length = 470

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 265 GDIKSYG---PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           G +KS G   P++   + D+  R  +R    + L  E L   ++   G  T L    Q +
Sbjct: 247 GPLKSIGLWNPKWG-DLFDRENRLKKRPHAVVQLRKEDLEGKLLNMVGFQTNLKWSEQKR 305

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
             R IPGLEK   +R G      ++ +PK L PTL+  K   LF AGQI GT GY  AAA
Sbjct: 306 IFRMIPGLEKAEFVRFGVMHRNTFLESPKLLLPTLQFMKRENLFAAGQITGTEGYAAAAA 365

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            GL+AGIN++  +     + F   +S IG +++ +++K
Sbjct: 366 GGLLAGINASLLAKGKKPVSFP-DESMIGSLMNFISNK 402



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 25/140 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V+VIG G AG EAA   A  G    L+          H TS  G + C+ + G L    
Sbjct: 5   EVLVIGAGLAGSEAAWQLANSGVPVKLVEMRPIKSTPAHHTSEFGELVCSNSFGALSPDR 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+     L+ + AD   +          PA  G     DR  +  A+  ++ +
Sbjct: 65  AAGLLQKELRFFKSLIVQTADKFAV----------PA--GGALAVDRSKFSYALTEQLSN 112

Query: 114 QENLDVIQGEVAGFNTEKNI 133
              +++ + E     +E+NI
Sbjct: 113 HPLVEIKRFEQLDIPSEENI 132


>gi|169836120|ref|ZP_02869308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [candidate division TM7 single-cell isolate TM7a]
          Length = 68

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 37/66 (56%)

Query: 19 EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
          EAA  AA+ G   AL T     I  MSCNP++GG GK HLV E+  L G M R  D   +
Sbjct: 2  EAALAAARYGLKIALFTIYLDNIAMMSCNPSVGGPGKSHLVSELGMLGGEMARHIDNYNL 61

Query: 79 QFRVLN 84
          Q + LN
Sbjct: 62 QLKNLN 67


>gi|311234467|gb|ADP87321.1| gid protein [Desulfovibrio vulgaris RCH1]
          Length = 470

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 143/387 (36%), Gaps = 38/387 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           +IG G AGCE A   A+ G    L   K +       NP +G L   + +R  D   G  
Sbjct: 9   IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDLGELVCSNSLRSDDIASGVG 68

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +   I     +  + PA +            LA+ R++ ++    VI+ E  G
Sbjct: 69  LLKQEMRELGSIVMEAADATRVPAGKA-----------LAVDRDLFARHITAVIEAE-PG 116

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM----GDSPSNSL 182
              E+  ++S  + D ++     VV+  G      +      +  G++      +P  + 
Sbjct: 117 ITLERREVAS--LDDPALASADVVVIAAGPLASAGLSDSLAAVVGGQLYFYDAIAPIIAA 174

Query: 183 FNSFMKFDFDTGRLKTGTPARL-DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
            +  +   F   R   G P    D      ++ E     E L+      +K+ +R  E  
Sbjct: 175 ESIDLSIVFSGSRY--GEPGEEGDYLNCPMNRDEYDAFYEALL----AAEKVPSRDFEKE 228

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +          + E    + ++ G  K  G        D   R G R    I L  E  N
Sbjct: 229 LHFEGCMPIEALAERGPRTLVF-GPFKPVG------FTDP--RTGTRPYAIIQLRAENRN 279

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
                  G  T L    Q +  R IPGL     +R G      Y+N P+ L   L  +  
Sbjct: 280 KTAFNIVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRNTYVNAPRVLADDLSLRAD 339

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGI 387
             +FLAGQI G  GY E+AA G+  G+
Sbjct: 340 KRVFLAGQITGVEGYVESAACGMWLGM 366


>gi|46580755|ref|YP_011563.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404580|sp|Q729K0|TRMFO_DESVH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46450175|gb|AAS96823.1| gid protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 474

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 143/387 (36%), Gaps = 38/387 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           +IG G AGCE A   A+ G    L   K +       NP +G L   + +R  D   G  
Sbjct: 13  IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDLGELVCSNSLRSDDIASGVG 72

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +   I     +  + PA +            LA+ R++ ++    VI+ E  G
Sbjct: 73  LLKQEMRELGSIVMEAADATRVPAGKA-----------LAVDRDLFARHITAVIEAE-PG 120

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM----GDSPSNSL 182
              E+  ++S  + D ++     VV+  G      +      +  G++      +P  + 
Sbjct: 121 ITLERREVAS--LDDPALASADVVVIAAGPLASAGLSDSLAAVVGGQLYFYDAIAPIIAA 178

Query: 183 FNSFMKFDFDTGRLKTGTPARL-DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
            +  +   F   R   G P    D      ++ E     E L+      +K+ +R  E  
Sbjct: 179 ESIDLSIVFSGSRY--GEPGEEGDYLNCPMNRDEYDAFYEALL----AAEKVPSRDFEKE 232

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +          + E    + ++ G  K  G        D   R G R    I L  E  N
Sbjct: 233 LHFEGCMPIEALAERGPRTLVF-GPFKPVG------FTDP--RTGTRPYAIIQLRAENRN 283

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
                  G  T L    Q +  R IPGL     +R G      Y+N P+ L   L  +  
Sbjct: 284 KTAFNIVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRNTYVNAPRVLADDLSLRAD 343

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGI 387
             +FLAGQI G  GY E+AA G+  G+
Sbjct: 344 KRVFLAGQITGVEGYVESAACGMWLGM 370


>gi|163868075|ref|YP_001609279.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella tribocorum CIP
           105476]
 gi|205830324|sp|A9ISB8|TRMFO_BART1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161017726|emb|CAK01284.1| gid-family protein [Bartonella tribocorum CIP 105476]
          Length = 474

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  TL  K+   L  AG
Sbjct: 291 GFQTKLKYGEQVRIFRMIPGLEKAEFARLGGLHRNTYLNSPIILDQTLRLKQKKQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+AA GL+AG  +A + +  +C C     +  G +++ +T   +++     
Sbjct: 351 QITGCEGYVESAAIGLLAGRFAAAEYHH-NCPCLPPQTTAFGALLNHITGGHIID----- 404

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGER---RQKRFAK 466
              AE R S +P N +  L P    +   G+R   ++K+ AK
Sbjct: 405 -EEAE-RPSFQPMNINFGLFPPISPIRYSGKRLPSKEKKLAK 444


>gi|294102503|ref|YP_003554361.1| gid protein [Aminobacterium colombiense DSM 12261]
 gi|293617483|gb|ADE57637.1| gid protein [Aminobacterium colombiense DSM 12261]
          Length = 438

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T+L    Q++  R IPGLE     R G      Y+N PK L  +L  +    LFLAG
Sbjct: 280 GFQTSLKWGEQNRVFRMIPGLENAEFARYGVMHRNIYVNAPKVLDGSLRLRGSKALFLAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL--TSKGVLEPYR 425
           QI G  GY E+ A GLVAG++ A  +  L    + + ++ IG ++  L  T   V  P  
Sbjct: 340 QITGVEGYLESTAMGLVAGLHVAFCAAGLQIPLWPK-ETAIGSLLRYLAETDPKVFHPMN 398

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +        + + P + D ++ P  ++   +GER  +   ++
Sbjct: 399 V-------NLGIFP-SLDVKIRPKSLRCQKVGERALRALEEF 432



 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 25/148 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + RS +++++GGG AG EAA   A+ G S  L+          H+T  +G + C+ ++G 
Sbjct: 1   MRRSDEILIVGGGLAGSEAAWQLAQRGYSVCLVEMRPVATTPAHQTDMMGELVCSNSLGA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L+ L+   AD + +          PA  G     DR ++   + 
Sbjct: 61  DNLTSPAGILKGELRYLNSLIMEAADHSSV----------PA--GKALAVDRNVFAGYIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISS 136
           +++     + + + E+     E  II++
Sbjct: 109 KKLSGHPQIRIERREITELPEEPAIIAT 136


>gi|158335804|ref|YP_001516978.1| tRNA (uracil-5-)-methyltransferase Gid [Acaryochloris marina
           MBIC11017]
 gi|205830303|sp|B0C6V8|TRMFO_ACAM1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|158306045|gb|ABW27662.1| glucose inhibited division protein A [Acaryochloris marina
           MBIC11017]
          Length = 465

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      +IN P+ L PTL+ K+   L  AG
Sbjct: 295 GFQTNLRWGEQKRVFQMIPGLESAEFVRMGVMHRNTFINAPELLHPTLQFKQRPTLLAAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ GT GY  A A G +AG N+ R +  L+ +    T
Sbjct: 355 QLIGTEGYTAATAGGWLAGTNAVRLAQGLNPVVLPTT 391


>gi|288818938|ref|YP_003433286.1| glucose-inhibited division protein [Hydrogenobacter thermophilus
           TK-6]
 gi|288788338|dbj|BAI70085.1| glucose-inhibited division protein [Hydrogenobacter thermophilus
           TK-6]
 gi|308752524|gb|ADO46007.1| gid protein [Hydrogenobacter thermophilus TK-6]
          Length = 442

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           +GP     + DK    GER    + L  E     ++   G  T +    Q + +R IP L
Sbjct: 241 FGPMKPVGLWDKTK--GERPFAVVQLRKENREGTLLSLVGFQTRMTYSEQKRVLRLIPCL 298

Query: 330 EKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
                +R G      +I   K L P L  +K+  +F AGQI G  GY  +AA G++AGIN
Sbjct: 299 RNAVFVRLGSMHRNTFIQSNKVLTPFLNMRKMENIFFAGQITGVEGYIASAATGILAGIN 358

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSK-GVLEP 423
           + R    L  + +   ++ +G +I  +T+K G L+P
Sbjct: 359 AGRLLKGLKPV-YPPEETMLGSLIKYITTKEGQLQP 393


>gi|329121222|ref|ZP_08249849.1| tRNA:M(5)U-54 methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327470156|gb|EGF15619.1| tRNA:M(5)U-54 methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 431

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGL+    +R G      YIN  EL   T+ETKK  GLF AG
Sbjct: 279 GFQTHLKWGEQKRVFGMIPGLQNAEFVRYGVMHRNTYINTPELLNETMETKKREGLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           Q+ G  GY E+AA G+VA  ++  +
Sbjct: 339 QMTGVEGYIESAASGIVAAYSATAR 363


>gi|86607297|ref|YP_476060.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. JA-3-3Ab]
 gi|123504911|sp|Q2JRF7|TRMFO_SYNJA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86555839|gb|ABD00797.1| gid protein [Synechococcus sp. JA-3-3Ab]
          Length = 451

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N P+ L PTL+ ++   L  AG
Sbjct: 289 GFQTNLKWGEQQRVFRLIPGLEAAEFVRFGVMHRNTFLNSPQLLLPTLQFRRRPTLLAAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  A A G +AG N+AR +  L  I     ++ +G +   ++S
Sbjct: 349 QLVGTEGYACAVAGGWLAGQNAARLALGLPLITLP-PETMMGSLFQFISS 397


>gi|238019260|ref|ZP_04599686.1| hypothetical protein VEIDISOL_01124 [Veillonella dispar ATCC 17748]
 gi|237863959|gb|EEP65249.1| hypothetical protein VEIDISOL_01124 [Veillonella dispar ATCC 17748]
          Length = 438

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 151/421 (35%), Gaps = 72/421 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI--GGL-- 53
           +VIVIG G AG EAA   A  G    L           H+T     + C+ ++  G +  
Sbjct: 5   NVIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIEN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++   ADA  +          PA  G     DR L+   +  ++  
Sbjct: 65  AVGLLKEEMRRLGSIIMECADATAV----------PA--GGALAVDRHLFSEMVTEKVKG 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V   EV     E                  TV+  +G      +   K+K   G 
Sbjct: 113 HPNITVHHEEVTEIPAE-----------------GTVIFASGPLTSEALG-DKIKELTGE 154

Query: 174 MG----DSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            G    D+ +  +    + +D  F   R   G     D   +    TE+++        +
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEYK-------A 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG---DIKSYGPRYCPSIEDKIVR 284
           F  +  T   ++      + E   I  E      I +    D   YGP     + DK  R
Sbjct: 203 FWHELTTAEAVQP----KDFEK-EIYFEGCMPVEIMASRGEDTLRYGPLKPVGLVDK--R 255

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
             E +   + L  E     +    G  T L    Q +    IPGLE    +R G      
Sbjct: 256 TNEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNT 315

Query: 345 YINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN  EL     + KK   LF AGQ+ G  GY E+AA GL+ G+   R  +    I F +
Sbjct: 316 YINSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLDDRSFIDFPK 375

Query: 404 T 404
           T
Sbjct: 376 T 376


>gi|284048586|ref|YP_003398925.1| gid protein [Acidaminococcus fermentans DSM 20731]
 gi|283952807|gb|ADB47610.1| gid protein [Acidaminococcus fermentans DSM 20731]
          Length = 438

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G   +  Y+N P  L P    ++    + AG
Sbjct: 279 GFQTHLKWPEQKRVFRMIPGLENAEFVRYGVMHKNSYLNSPLLLNPDYSLRERPHFYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           Q+ G  GY E+AA GL AGI +AR       + F R ++ IG +
Sbjct: 339 QMTGVEGYVESAASGLAAGIYAARAMAGKPPVLFPR-ETAIGAL 381


>gi|220929472|ref|YP_002506381.1| tRNA (uracil-5-)-methyltransferase Gid [Clostridium cellulolyticum
           H10]
 gi|219999800|gb|ACL76401.1| gid protein [Clostridium cellulolyticum H10]
          Length = 436

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      YIN P+ L  T   K    L+ AG
Sbjct: 279 GFQTHLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTYINSPRLLDNTYRLKSNENLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           QI G  GY E+ + G +AGIN+A +    + I F + ++ +G + + ++ + +
Sbjct: 339 QITGVEGYIESTSSGFIAGINAAAQCMGKERIIF-QPNTALGALSNYISDESI 390



 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 25/133 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--- 52
           S  V VIG G AGCEAA   AK G +  L           H ++    + C+ ++     
Sbjct: 2   SRKVNVIGAGLAGCEAAYQIAKRGINVTLYEMKPQKSTPAHHSADFAELVCSNSLRSDQL 61

Query: 53  -LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G L  E+  +D L+ + AD            K PA  G     DRE +   + R+I
Sbjct: 62  ENAAGLLKEELRVMDSLIMKAADET----------KVPA--GGALAVDREGFSQYITRQI 109

Query: 112 LSQENLDVIQGEV 124
               N+++I  E+
Sbjct: 110 KENSNIEIIHTEM 122


>gi|313680130|ref|YP_004057869.1| gid protein [Oceanithermus profundus DSM 14977]
 gi|313152845|gb|ADR36696.1| gid protein [Oceanithermus profundus DSM 14977]
          Length = 439

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R GER    + L  E     +    G  T L    Q Q +R IPGLE+  I+R G     
Sbjct: 253 RTGERPFAVVQLRQEDREGRMWSLVGFQTGLKWGDQKQVVRLIPGLEQAEIVRYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            Y+N P+ L   LE KK+ G+F+AG + G  GY E+AA G 
Sbjct: 313 TYLNAPRVLSERLELKKLPGVFVAGVLAGVEGYLESAATGW 353


>gi|289547856|ref|YP_003472844.1| gid protein [Thermocrinis albus DSM 14484]
 gi|289181473|gb|ADC88717.1| gid protein [Thermocrinis albus DSM 14484]
          Length = 440

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFLAG 367
           G  T +  + Q + +R IP L     +R G      +I   + L P L  +K   +F AG
Sbjct: 279 GFQTRMTYQEQKRVLRLIPCLRNAVFVRLGSMHRNTFIQSNRVLTPFLNMRKYPNIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK-GVLEP 423
           QI G  GY  +AA G++AGIN+ R     D +     D+ +G ++  +TSK G L+P
Sbjct: 339 QITGVEGYVASAATGILAGINAGRFLKGEDLVV-PPEDTMLGALVRYITSKEGQLQP 394



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIGGG AG EAA   A+ G    L           H T  +  + C+   G      G
Sbjct: 4   VVVIGGGLAGSEAAYRLAEEGFQVILYEMRPQRSTPAHSTDRLAELVCSNTFGSTELTTG 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R A++  +          PA  G     DREL+  A+   I + 
Sbjct: 64  AGLLKAEMRLLGSLVLRCAESYSV----------PA--GTALAVDRELFSSAVTEIIQNH 111

Query: 115 ENLDVIQGEV 124
             + VI+ EV
Sbjct: 112 PRIRVIREEV 121


>gi|315928770|gb|EFV08044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 74

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 47/71 (66%)

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+TPAAL++
Sbjct: 3   QKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDI 62

Query: 609 LLIYIKKNTVK 619
           L IYIK    K
Sbjct: 63  LQIYIKMQKKK 73


>gi|148242640|ref|YP_001227797.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. RCC307]
 gi|205830343|sp|A5GU85|TRMFO_SYNR3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147850950|emb|CAK28444.1| Protein gid homolog [Synechococcus sp. RCC307]
          Length = 456

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 266 DIKSYGP--------RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
           D   YGP        +    + D+ VR  +R    + L  E  +  +    G  T L   
Sbjct: 239 DTMRYGPLKPIGLWDQRWGDVTDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWG 298

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE 376
            Q + ++ IPGLE  + +R G      ++  P+ L PTL+ ++   L  AGQI GT GY 
Sbjct: 299 EQKRVLQLIPGLENASFVRFGVMHRNTFLEAPQLLQPTLQFRQRPSLLAAGQITGTEGYA 358

Query: 377 EAAAQGLVAGINSAR 391
            A A G +AG N+AR
Sbjct: 359 AAVAGGWLAGTNAAR 373


>gi|66576106|gb|AAY51660.1| mitochondrial MTO1 [Lagothrix lagotricha]
          Length = 51

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF 
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFF 49


>gi|260435485|ref|ZP_05789455.1| tRNA:M(5)U-54 methyltransferase [Synechococcus sp. WH 8109]
 gi|260413359|gb|EEX06655.1| tRNA:M(5)U-54 methyltransferase [Synechococcus sp. WH 8109]
          Length = 456

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 253 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 311

Query: 327 PGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGL +   +R G      ++ +P+ L PTL+  +   L  AGQI GT GY  A A G +A
Sbjct: 312 PGLGQAEFVRFGVMHRNTFLESPQLLQPTLQFLQRPNLLAAGQITGTEGYAAAVAGGWLA 371

Query: 386 GINSARKSNKLDCICFSRT 404
           G N+AR +  L+ I    T
Sbjct: 372 GTNAARLALGLEPIDLPAT 390


>gi|87124706|ref|ZP_01080554.1| probable glucose inhibited division protein [Synechococcus sp.
           RS9917]
 gi|86167585|gb|EAQ68844.1| probable glucose inhibited division protein [Synechococcus sp.
           RS9917]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 253 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLI 311

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE    +R G      ++  P+ L  TL+ ++   L  AGQI GT GY  A A G +A
Sbjct: 312 PGLENAEFVRFGVMHRNTFLEAPQLLDATLQFRQRPTLLAAGQITGTEGYAAAVAGGWLA 371

Query: 386 GINSAR 391
           G N+AR
Sbjct: 372 GTNAAR 377



 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
          +N+   V+VIG G AG EAA   A  G    L+          H +S    + C+ + G 
Sbjct: 1  MNQDAPVVVIGAGLAGTEAAWQIASAGVPVRLVEMRPVRRSPAHHSSEFAELVCSNSFGA 60

Query: 53 L----GKGHLVREIDALDGLMGRVADAAGI 78
          L      G L  E+  L  L+ R ADA  +
Sbjct: 61 LSSDRAAGLLQEELRRLGSLVIRTADAHAV 90


>gi|325283101|ref|YP_004255642.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Deinococcus proteolyticus MRP]
 gi|324314910|gb|ADY26025.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Deinococcus proteolyticus MRP]
          Length = 459

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   ++ IPGLE   I+R G      Y+N P  L  TL+ +     F+AG
Sbjct: 276 GFQTGLKWGDQKDVVQLIPGLENAEIVRYGVMHRNTYLNAPAVLQETLQLRADPQKFVAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + GT GY E+AA G +AG+N+AR +  L       T S +G ++  L S
Sbjct: 336 VLAGTEGYLESAATGWLAGLNAARLAQGLAPSAPPHT-SMLGGLVHYLAS 384


>gi|56551587|ref|YP_162426.1| tRNA (uracil-5-)-methyltransferase Gid [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|81170609|sp|Q5NPP5|TRMFO_ZYMMO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56543161|gb|AAV89315.1| gid protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 446

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      +I +P  L   L  KK + +  AG
Sbjct: 280 GFQTKLKYAEQIRIFRMIPGLEKAEFARLGGMHRNSFIRSPVLLDEYLRLKKQTNIRFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLD-CICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           QI G  GY E+A+ GL+AGI +A  ++KLD  +     +S +G ++  +T     + Y+ 
Sbjct: 340 QITGCEGYIESASIGLLAGIFTA--ADKLDKKVSSPPVESALGALLGHITKNADPDHYQP 397

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                     L P  ++    P   +   + ER +K   ++I E  FL+S
Sbjct: 398 MN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEAFLKS 441


>gi|241761283|ref|ZP_04759371.1| gid protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374190|gb|EER63687.1| gid protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 446

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      +I +P  L   L  KK + +  AG
Sbjct: 280 GFQTKLKYAEQIRVFRMIPGLEKAEFARLGGMHRNSFIRSPVLLDEYLRLKKQTNIRFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLD-CICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           QI G  GY E+A+ GL+AGI +A  ++KLD  +     +S +G ++  +T     + Y+ 
Sbjct: 340 QITGCEGYIESASIGLLAGIFTA--ADKLDRKVSSPPVESALGALLGHITKNADPDHYQP 397

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                     L P  ++    P   +   + ER +K   ++I E  FL+S
Sbjct: 398 MN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEAFLKS 441


>gi|78044952|ref|YP_360613.1| tRNA (uracil-5-)-methyltransferase Gid [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575919|sp|Q3AB71|TRMFO_CARHZ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77997067|gb|ABB15966.1| glucose inhibited division protein A [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 433

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   +GP     I D   R G+     + L  E L  D     G  T L  + Q++  R 
Sbjct: 236 DTLRFGPLKPKGIIDP--RTGKEPYAVVQLRRENLAGDYYNLVGFQTNLTWKEQNRVFRL 293

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    IR G   +  +IN P  L P L  KK   LF AGQI G  GY  A A G  
Sbjct: 294 IPGLENAEFIRFGVMHKNTFINSPALLTPYLNLKKYPRLFFAGQITGGEGYVAAIATGAW 353

Query: 385 AGINSA 390
           AGI ++
Sbjct: 354 AGIAAS 359


>gi|317495292|ref|ZP_07953662.1| m(5)U-54 methyltransferase [Gemella moribillum M424]
 gi|316914714|gb|EFV36190.1| m(5)U-54 methyltransferase [Gemella moribillum M424]
          Length = 434

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I  IPGLE  +I+R G      Y+N P+ L  T   K    ++ AG
Sbjct: 280 GFQTHLKWGEQKRIINMIPGLENASIVRYGVMHRNTYLNSPQLLEKTYRLKDEENIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM---IDDLTSK 418
           Q+ G  GY E+AA G+VA +N+   +   + +    T++ IG M   I D TSK
Sbjct: 340 QMTGVEGYVESAASGIVAALNALYNTEGKEVVF--PTETMIGAMANYIVDNTSK 391



 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 25/131 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           +IVIG G AG EAA   AK G    L           HKT     + C+ ++        
Sbjct: 5   IIVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHKTQNFAELVCSNSLRANNITNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADA  +          PA  G     DR+ +   + + I + 
Sbjct: 65  VGLLKEEMRMLDSLIMKCADATQV----------PA--GGALAVDRDKFSEMITKTIKNH 112

Query: 115 ENLDVIQGEVA 125
            N++VI+ E++
Sbjct: 113 PNINVIEEELS 123


>gi|269964324|ref|ZP_06178570.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269830940|gb|EEZ85153.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 138

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LKS  +  
Sbjct: 1   MFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLKSTWMNP 60

Query: 486 KN--------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +        L  T ++ +  G+       +SY   +  + F+   + ++ S    E+++
Sbjct: 61  NSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAS----EQVE 116

Query: 538 IESSYAAYTGRQMIEAKEI 556
           I+  Y  Y  RQ  E ++I
Sbjct: 117 IQVKYDGYIKRQQEEIRKI 135


>gi|49475384|ref|YP_033425.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella henselae str.
           Houston-1]
 gi|81170596|sp|Q6G3Y9|TRMFO_BARHE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49238190|emb|CAF27400.1| Glucose inhibited division protein a [Bartonella henselae str.
           Houston-1]
          Length = 468

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      Y+N P  L  TL  K+  GL  AG
Sbjct: 291 GFQTKLKYGEQVRIFRMIPGLENAEFARLGGLHRNTYLNSPIILDQTLRLKQRPGLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E++A GL+AG  +A + +  +C C     + +G +++ +T   +++     
Sbjct: 351 QITGCEGYVESSAIGLLAGRFAAAEYH-YNCPCLPPLTTALGALLNHITGGHIVD----- 404

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGER---RQKRFAK 466
                 R S +P N +  L P        G+R   ++K+ AK
Sbjct: 405 --EKTGRKSFQPMNINFGLFPPIASASYSGKRLPSKEKKLAK 444


>gi|225848138|ref|YP_002728301.1| tRNA (uracil-5-)-methyltransferase Gid [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644457|gb|ACN99507.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 434

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     + D   + G+R    + L  E +   ++   G  T L    Q +  R IP L
Sbjct: 240 YGPMKPVGLIDP--KTGKRPFAVVQLRKENIEGTLLSLVGFQTKLKYPEQQRIFRLIPAL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           +    ++ G      +I  ++L  PTL+ KK   +  AGQI G  GY  +AA G++AGIN
Sbjct: 298 KDAEFVKLGSIHRNTFIQSQKLLLPTLQLKKNPNILFAGQITGVEGYMASAATGIIAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTS-KGVLEP 423
             R     + +   + ++ IG +I+ +T+ K  L+P
Sbjct: 358 VVRILQGKEPLTVPK-ETMIGGLINYITTAKNELQP 392


>gi|268608879|ref|ZP_06142606.1| tRNA (uracil-5-)-methyltransferase Gid [Ruminococcus flavefaciens
           FD-1]
          Length = 440

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 164/444 (36%), Gaps = 80/444 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AGCEAA   A+ G +  L           HK S    + C+ ++     G  
Sbjct: 3   VSVIGAGLAGCEAAWRLAQEGINVKLYEMKPGKYSPAHKYSGFAELVCSNSLKAARLGSA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E++ L  L             V   K+     G     DRE +  A+  +I S 
Sbjct: 63  AGLLKYEMEMLGSLT------------VPCAKENSVEAGGALAVDREKFSDAVTAKIKSH 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV                  + I   TV++ TG    G +        A R+
Sbjct: 111 PLIEVIGEEV------------------TEIPDGTVIIATGPLTSGAM--------AERI 144

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-DKTEKQFADERLIP------FS 227
            +     L        F        T   LD + + +  +  +  AD    P       +
Sbjct: 145 KELCGEGL-------SFYDAAAPIVTYESLDKEKVFYASRYGRGEADYVNCPMNKEEYLA 197

Query: 228 FMTDKITNRQIECGITRTNLETHRI-IMEN---IKHSAIYSGDIKSYGPRYCPSIEDKIV 283
           F    I+  +++      + ETH   + E    I+  A    D   +GP     I+D   
Sbjct: 198 FYEALISAEKVQL----KDFETHPFSVYEGCMPIEELARRGVDTMRFGPMKPVGIDDP-- 251

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E     +    G  T L    Q +    I GLE    +R G     
Sbjct: 252 RTGRRPYAVVQLRRENSEGTLFNLVGFQTNLKFGEQKRVFSMITGLENAEFMRYGVMHRN 311

Query: 344 DYINPKELFPT-LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +IN  EL  +    ++   ++ AGQI G  GY E+AA G++AG  +ARK   L+ +   
Sbjct: 312 TFINSPELLNSDFSMRQHPEIYFAGQITGVEGYMESAASGIIAGTAAARKLKGLEPVVLP 371

Query: 403 RTDSYIGVM---IDDLTSKGVLEP 423
            +++  G +   I D  + G  +P
Sbjct: 372 -SETMTGALSAYISDSFNSGKFQP 394


>gi|326204630|ref|ZP_08194486.1| gid protein [Clostridium papyrosolvens DSM 2782]
 gi|325985197|gb|EGD46037.1| gid protein [Clostridium papyrosolvens DSM 2782]
          Length = 436

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      YIN PK L  T   K    ++ AG
Sbjct: 279 GFQTHLKWPEQKRVFSLIPGLENAEFVRYGVMHRNTYINSPKLLDNTYRLKNNENMYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           QI G  GY E+ + G VAGIN+A +    + I F
Sbjct: 339 QITGVEGYIESTSSGFVAGINAAAQCRGGERIVF 372



 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AGCEAA   AK G +  L           H ++    + C+ ++        
Sbjct: 5   VNVIGAGLAGCEAAYQLAKRGINVTLYEMKPEKSSPAHHSNDFAELVCSNSLRSAQLENA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ R AD   +          PA  G     DRE +   + +EI   
Sbjct: 65  VGLLKEELRTMDSLIMRAADETRV----------PA--GGALAVDREGFSQYITKEIKEN 112

Query: 115 ENLDVIQGEV 124
            N++++  E+
Sbjct: 113 SNIEIVNKEM 122


>gi|304436894|ref|ZP_07396858.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370093|gb|EFM23754.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 440

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     +E  +   GER    + L  +     +    G  T L    Q +  + 
Sbjct: 239 DTLLYGPLKPVGLEHPVT--GERPYAVVQLRQDNAAGSIYNIVGFQTHLKWPEQRRVFQM 296

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGL     +R G      +I+ P+ L PT +      L  AGQ+ G  GY E+AA GLV
Sbjct: 297 IPGLAAAEFLRYGVMHRNSFISAPRHLRPTFQYTGDDRLLFAGQMTGVEGYVESAASGLV 356

Query: 385 AGINSAR 391
           AG N+AR
Sbjct: 357 AGKNAAR 363


>gi|332703455|ref|ZP_08423543.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553604|gb|EGJ50648.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 443

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 158/433 (36%), Gaps = 68/433 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHL 58
           + +IGGG AGCE A   A+ G    L           H+   +  + C+ ++        
Sbjct: 4   IAIIGGGLAGCECAWRLAQAGIPVRLFEMKPIRRSPAHQEDGLAELVCSNSL------RS 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             E  A+  L   +  A  +   V    + PA  G     DR L+   M R+I S   ++
Sbjct: 58  EDEASAIGELKVEMRMAGSLVMEVAEATRVPA--GKALAVDRRLFSDYMTRKIESNPLIE 115

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           V++ EV   +       S ++ D        VV+  G  +                    
Sbjct: 116 VVRAEVESLD-------SPLLAD-----ADRVVVAAGPLV-------------------- 143

Query: 179 SNSLFNSFMKFDFDTGRL------KTGTPARLDGKTIIWDKTEKQFADERL-IPF----- 226
           S+SL +S  +   D G           T   +D +   W    +   D+ L  P      
Sbjct: 144 SDSLASSLAQALGDKGLYFYDAIAPIVTAESVDMEHAFWGSRYRPEDDDYLNCPLTEEEY 203

Query: 227 -SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            +F+ + +    + C     ++     +   I+  A       ++GP     ++D   R 
Sbjct: 204 KAFVRELLAAETVPCREFEEHMHFEGCL--PIEEMAARGEMTLAFGPMKPVGLDDP--RT 259

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G R    + L  E          G  T L    Q +    IPGL     +R G      +
Sbjct: 260 GRRPYAVLQLRAENRERTTFNLVGFQTKLKYPEQKRVFALIPGLRNAEYVRLGSIHRNTF 319

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +N P  L   LE K   G+ LAGQI G  GY E+AA GL  G+  A K+ +   + F   
Sbjct: 320 VNAPVVLTDELELKARPGVHLAGQITGVEGYLESAACGLWVGMLLAAKA-RGQSLGFPPR 378

Query: 405 DSYIGVMIDDLTS 417
           ++ +G ++  L +
Sbjct: 379 ETALGALLSHLRT 391


>gi|313605983|gb|EFR83129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria monocytogenes FSL F2-208]
          Length = 83

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 50/77 (64%)

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G+
Sbjct: 2   YEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGV 61

Query: 602 TPAALNLLLIYIKKNTV 618
            PA +++LL+YI++  +
Sbjct: 62  NPADISILLVYIEQGKI 78


>gi|163783045|ref|ZP_02178040.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881725|gb|EDP75234.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 437

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N     L   G  T + YP           Q +  R IP L     +R G   
Sbjct: 262 VVQLRKENAEGTLLSLVGFQTKLTYPE----------QKRVFRLIPALRNAVFVRLGSMH 311

Query: 342 EYDYINP-KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +I   + L P L  +K+  +F AGQI G  GY  ++A G++AGIN+ R +   + + 
Sbjct: 312 RNTFIQSNRVLTPFLNMRKMENIFFAGQITGVEGYVASSATGILAGINAGRLAEGKELVV 371

Query: 401 FSRTDSYIGVMIDDLTSK-GVLEP 423
               ++ +G ++  +T K G L+P
Sbjct: 372 -PPAETMLGSLVRYVTGKEGELQP 394



 Score = 37.4 bits (85), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 25/122 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           +IVIGGG AG E+A   A  G    L           HKT  +  + C+  +GG     G
Sbjct: 5   IIVIGGGLAGVESAWRLANEGHKVILYEMRPQKQTPAHKTDKLAELVCSNTLGGTELTTG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+   A  A +          PA  G     DRE++   + R I   
Sbjct: 65  AGLLKAEMSLLNSLVIEAAKEARV----------PA--GGALGVDREIFASYITRRIEGH 112

Query: 115 EN 116
            N
Sbjct: 113 HN 114


>gi|225873465|ref|YP_002754924.1| gid protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792361|gb|ACO32451.1| gid protein [Acidobacterium capsulatum ATCC 51196]
          Length = 442

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 147/412 (35%), Gaps = 93/412 (22%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH--- 57
           VIGGG AG EAA +AA++GA   L           H+T+  G + C+ ++    +     
Sbjct: 7   VIGGGLAGPEAALMAARMGADVDLYEMRPVRQTPAHQTADFGELVCSNSLKSESENTAPW 66

Query: 58  -LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E+      + + ADAA +          PA  G     DRE +   +   I ++  
Sbjct: 67  LLKQEMRRAGSPLLQCADAAAV----------PA--GHALAVDREEFSRRITAAIAAEPR 114

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + V + EV   + E  +                 VL +G           L     R+  
Sbjct: 115 ITVHREEVTELDPEGPV----------------TVLASGPLTSSA-----LSEEIARLTG 153

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
               + ++S                  +D ++I  D+          + F+   DK T  
Sbjct: 154 QEHLAFYDSISPI--------------VDAESIDMDR----------VYFAARWDKGTAD 189

Query: 237 QIECGITRTN-------LETHRIIMEN-------------IKHSAIYSGDIKSYGPRYCP 276
            I C + R         L +   + E              I+  A    D   +GP    
Sbjct: 190 YINCPMNREEYDRFYDALVSAETVKEKDWEKLDYFEGCLPIEELARRGRDTLRFGPMKPV 249

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
            + D   R G+     + L  E L  D     G    L    Q + +R IPGLE    +R
Sbjct: 250 GLRDP--RTGQTPWAVVQLRCENLRADSYNLVGFQNHLKYGEQARILRMIPGLENAKFLR 307

Query: 337 PGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
            G      YI  P  L   L  K    +F+AGQ++G  GY E+   GL+AGI
Sbjct: 308 YGQIHRNTYIQAPAVLAGRLHFKAHPRVFVAGQLSGVEGYTESMGMGLLAGI 359


>gi|88808751|ref|ZP_01124261.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
 gi|88787739|gb|EAR18896.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
          Length = 458

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 252 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 310

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE+   +R G      ++  P  L  TL+ +    L  AGQI GT GY  A A G +A
Sbjct: 311 PGLEQAEFVRFGVMHRNTFLEAPALLDATLQFRSRPTLLAAGQITGTEGYAAAVAGGWLA 370

Query: 386 GINSARKSNKLDCICFSRTDSYIGVM 411
           G N+AR       I   RT + +G +
Sbjct: 371 GTNAARLVQGEHPIDLPRT-TMVGAL 395


>gi|297568410|ref|YP_003689754.1| gid protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924325|gb|ADH85135.1| gid protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 445

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLE 356
           EG+  ++V   G  T L    Q +  R IPGLE+    R G      ++  P+ L  +L+
Sbjct: 278 EGMLYNLV---GFQTKLSHAGQKEVFRQIPGLEQAQFARLGSIHRNTFVCAPRVLQASLQ 334

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
            +  + + LAGQI+G  GY E+AA GL+AGIN+A
Sbjct: 335 LQARADILLAGQISGVEGYVESAAGGLLAGINAA 368


>gi|94984591|ref|YP_603955.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus geothermalis
           DSM 11300]
 gi|122986705|sp|Q1J148|TRMFO_DEIGD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94554872|gb|ABF44786.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Deinococcus geothermalis DSM 11300]
          Length = 458

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   +  IPGLE   I+R G      Y+N P+ L  TL+ +     F+AG
Sbjct: 280 GFQTGLKWGDQKVVVNLIPGLENAEIVRYGVMHRNTYLNAPEVLDATLQLRADPQKFVAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + GT GY E+AA G +AG N+AR +  L  +     +S +G ++  L S
Sbjct: 340 VLAGTEGYLESAATGWLAGTNAARLARGLTPLT-PPPESMLGGLVRYLAS 388


>gi|189426314|ref|YP_001953491.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter lovleyi SZ]
 gi|189422573|gb|ACD96971.1| gid protein [Geobacter lovleyi SZ]
          Length = 443

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+    N  +      G  T + +P           Q + +R IPGLE+   +R G   
Sbjct: 262 VVQLRSENNEKTLYNLVGFQTKMTWPE----------QRRVLRMIPGLEQAEFVRLGVMH 311

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +IN P  L PT + K    +  AGQI G  GY E+A  G +AG+  A      + + 
Sbjct: 312 RNTFINAPALLLPTQQLKSDPRIIFAGQITGVEGYVESAGSGFLAGLTVAALVTHEEPV- 370

Query: 401 FSRTDSYIGVMIDDLTS 417
               ++ +G +I  +T+
Sbjct: 371 LPPQETALGALIHHITN 387



 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 25/140 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHL 58
           V +IG G AGCEAA  AA+ G    L           H+   +  + C+ ++ G   G+ 
Sbjct: 5   VTIIGAGLAGCEAAWQAAERGLQVRLYEMKPHRYSPAHQCEGLAELVCSNSLRGADLGNA 64

Query: 59  V----REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           V     E+     L+ + ADA  +          PA  G     DR+L+   +   I S 
Sbjct: 65  VGLLKEELRRCGSLIMQAADATRV----------PA--GGALAVDRDLFSAWITERISSH 112

Query: 115 ENLDVIQGEVAGFNTEKNII 134
            N+ +++ E+    +E  ++
Sbjct: 113 PNITLVREELTCLPSEGLVV 132


>gi|260752816|ref|YP_003225709.1| tRNA (uracil-5-)-methyltransferase Gid [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552179|gb|ACV75125.1| gid protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 446

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      +I +P  L   L  KK + +  AG
Sbjct: 280 GFQTKLKYAEQIRIFRMIPGLEKAEFARLGGMHRNSFIRSPVLLDEYLRLKKQTNIRFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLD-CICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           QI G  GY E+A+ GL+AGI +A  ++KLD  +     +S +G ++  +T     + Y+ 
Sbjct: 340 QITGCEGYIESASIGLLAGIFTA--ADKLDRKVSSPPVESALGALLGHITKNADPDHYQP 397

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                     L P  ++    P   +   + ER +K   ++I E  FL++
Sbjct: 398 MN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEAFLKN 441


>gi|116619487|ref|YP_821643.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122255955|sp|Q02C58|TRMFO_SOLUE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116222649|gb|ABJ81358.1| gid protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 445

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   +GP     ++D   R G R    + L  E L  +     G    +    Q + +R 
Sbjct: 242 DTLRFGPMKPMGLDDP--RTGRRPWAVVQLRQENLRAESFNLVGFQNHMKFPEQKRVLRL 299

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGL+    +R G      YIN P  L   L  +    +F AGQI+G  GY E+ A GL+
Sbjct: 300 IPGLQNAEFLRYGQIHRNTYINAPALLTAALNLRARPEIFFAGQISGVEGYVESIATGLM 359

Query: 385 AGINSA 390
           AGI++A
Sbjct: 360 AGIHAA 365


>gi|253573512|ref|ZP_04850855.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847040|gb|EES75045.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 440

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN PK L PT + K    LF AG
Sbjct: 281 GFQTHLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSPKLLMPTYQLKARPSLFFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ G  GY E+AA GL+AGIN+AR +   + I F   D+ +G M   +T+
Sbjct: 341 QMTGVEGYVESAASGLIAGINAARAAAGQEGIVFP-ADTTLGSMARYITT 389


>gi|303249333|ref|ZP_07335563.1| gid protein [Desulfovibrio fructosovorans JJ]
 gi|302489265|gb|EFL49225.1| gid protein [Desulfovibrio fructosovorans JJ]
          Length = 439

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 39/391 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
            + +IGGG AGCE A   A+ G ++ +   K +       +P +  L   + +R  + + 
Sbjct: 2   SIAIIGGGLAGCECALALARAGVASTIFECKPAHFSPAHVSPGLAELVCSNSLRSDEPVT 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLDVIQGEVA 125
            +     + A +   V+   +  AV   +  A DRE +  AM   I   EN  ++     
Sbjct: 62  AVGLLKVEMATLGSAVIEAARETAVPAGKALAVDREKFSAAMTARI---ENEPLVT---- 114

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T + I+S   + D ++    TVV+  G             +   R+  S   ++   
Sbjct: 115 --LTRREIMS---LSDPALTGFETVVVAAG------------PLATDRLATSLCETIGQE 157

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWD-KTEKQFADERLIPF------SFMTDKITNRQI 238
            + F      + T     +D +   W  + ++   D    P       +F+ + +  R++
Sbjct: 158 SLYFYDAIAPIVTTE--SVDMEQAFWQSRWQEGEGDYCNCPLDEAQYKAFVAELVAARKV 215

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
                    E H      I+  A       ++GP     + D   + G R    + L PE
Sbjct: 216 PS--REFEKELHFEGCLPIEAMAERGERTLAFGPMKPIGLTDP--KTGRRPYAVVQLRPE 271

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
            +    +   G  T L    Q +  R IP L      R G      ++N P+ L   LE 
Sbjct: 272 NVAKSTLNLVGFQTKLVYGEQERIFRMIPALHAAEFTRLGSIHRNTFVNAPRVLNDRLEL 331

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
               G +LAGQI G  GY E+AA GL  G+ 
Sbjct: 332 LARPGTYLAGQITGVEGYVESAACGLWLGVQ 362


>gi|110634143|ref|YP_674351.1| tRNA (uracil-5-)-methyltransferase Gid [Mesorhizobium sp. BNC1]
 gi|110285127|gb|ABG63186.1| gid protein [Chelativorans sp. BNC1]
          Length = 493

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 152/406 (37%), Gaps = 71/406 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHL 58
           + VIGGG AG EAA  AA+ G    L           HKT  +  + C+ +         
Sbjct: 31  IHVIGGGLAGSEAAWQAAEAGVPVILHEMRPVRGTDAHKTDGLAELVCSNSF-------- 82

Query: 59  VREIDALDGLMGRVAD----AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            R  DA    +G +      A  +  R  +  + PA  G     DR+ +  A+ + I   
Sbjct: 83  -RSDDAQTNAVGLLHAEMRLAGSLIMRAGDANQVPA--GGALAVDRDGFSDAVTQAIHGH 139

Query: 115 ENLDVIQGEVAGF---NTEKNIISSIVMQDNSM---IRCSTVVLTTGTF--LRGVIHIGK 166
             + V++ EVAG      ++ II++  +   S+   IR  T       F  +  ++H   
Sbjct: 140 PLITVVREEVAGLPPSEWDQTIIATGPLTAPSLAEAIRQETGAEALAFFDAIAPIVHFDT 199

Query: 167 LKIPA----GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
           + +       R   +        ++    +  + +    A LDG+   + + E     + 
Sbjct: 200 IDMDTCWFQSRYDKAGPGGTGKDYINCPMNKEQYQAFVQALLDGEKTAFKEWEGTPYFDG 259

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
            +P   M ++               ET R   M+ +  +  +  D K+Y           
Sbjct: 260 CLPIEVMAER-------------GPETLRHGPMKPMGLTNAHKPDEKAYA---------- 296

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N         G  T + Y            Q +  R IPGLE     R G   
Sbjct: 297 VVQLRQDNALGTLYNMVGFQTKLKYAE----------QVRIFRMIPGLENAEFARLGGLH 346

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
              YIN P  L  TL+ K   GL  AGQI G  GY E+AA GL+AG
Sbjct: 347 RNTYINSPALLDITLQLKSRPGLRFAGQITGCEGYVESAAMGLMAG 392


>gi|148239718|ref|YP_001225105.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. WH 7803]
 gi|205830342|sp|A5GLJ3|TRMFO_SYNPW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147848257|emb|CAK23808.1| Protein gid homolog [Synechococcus sp. WH 7803]
          Length = 451

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + ++ I
Sbjct: 245 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMI 303

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           PGLE    +R G      ++  P  L  TL+ +    L  AGQI GT GY  A A G +A
Sbjct: 304 PGLEGAEFVRFGVMHRNTFLEAPALLDATLQFRSRPNLLAAGQITGTEGYAAAVAGGWLA 363

Query: 386 GINSAR 391
           G N+AR
Sbjct: 364 GTNAAR 369


>gi|209549101|ref|YP_002281018.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534857|gb|ACI54792.1| gid protein [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 293 GFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG  +A +  K + I      + +G ++  +T   ++      
Sbjct: 353 QITGCEGYVESASVGLMAGRFAAAE-RKGEAISLPPATTALGSLLGHITGGHIV------ 405

Query: 428 TSRAEYRISLRPDNADNRLTP 448
           T     + S +P N +  L P
Sbjct: 406 TDEEPGKRSFQPMNINFGLFP 426


>gi|110004406|emb|CAK98744.1| hypothetical glucose inhibited protein gid n-terminal truncated
           [Spiroplasma citri]
          Length = 149

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGL  V I+R G   + ++IN P  L   L+ KK   +F AGQI    GY E+AA G++
Sbjct: 2   IPGLANVQIVRYGVIHKNNFINSPILLNQFLQVKKHHNIFFAGQIMDVEGYVESAATGII 61

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLT--SKGVLEPYR 425
           + +N  R  NK   + F   ++ +G +++ +   SK   +P +
Sbjct: 62  SALNITRFLNKKSMLTFP-PETMMGALVNYIVNASKTNFQPMK 103


>gi|86357464|ref|YP_469356.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli CFN 42]
 gi|123512154|sp|Q2K957|TRMFO_RHIEC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86281566|gb|ABC90629.1| glucose inhibited division protein A [Rhizobium etli CFN 42]
          Length = 477

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 293 GFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++
Sbjct: 353 QITGCEGYVESASVGLMAG-RFAAAERKGEAISLPPATTALGSLLGHITGGHIV 405


>gi|50365349|ref|YP_053774.1| tRNA (uracil-5-)-methyltransferase Gid [Mesoplasma florum L1]
 gi|81827281|sp|Q6F0T3|TMFO2_MESFL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|50363905|gb|AAT75890.1| glucose inhibited division protein C [Mesoplasma florum L1]
          Length = 446

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G RN   + L  +  N  +    G  T L    Q +    IPGLE    +R G   + ++
Sbjct: 259 GTRNHAVVQLRQDDANDRLYNIVGFQTNLKWPEQKRIFSMIPGLENAKFVRYGVMHKNNF 318

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           IN PK L   L+ K    +F AGQI G  GY E+   GL+  IN A
Sbjct: 319 INSPKVLNKYLQLKTNENIFFAGQITGVEGYVESCVSGLITAINIA 364



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 26/164 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL----G 54
           V +IG G AG EAA   AK      L   K  T            + C+ ++        
Sbjct: 6   VNIIGAGLAGTEAAYQLAKRNIKVKLFEVKRITKNPVQVLDGFAELVCSNSLRSNELTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ R A+ A +          PA  G     DR L+   + +EI S 
Sbjct: 66  VGTLKEEMRLLDSLIIRAAEYAQV----------PA--GGSLAVDRVLFSEYITKEISSN 113

Query: 115 ENLDVIQGEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           EN++VI  EV   N  E  +I+S  +  N +    T ++    F
Sbjct: 114 ENIEVIDLEVENINPNELTLIASGPLTTNKLQEQITKLIGNDDF 157


>gi|37523172|ref|NP_926549.1| tRNA (uracil-5-)-methyltransferase Gid [Gloeobacter violaceus PCC
           7421]
 gi|35214175|dbj|BAC91544.1| glucose-inhibited division protein [Gloeobacter violaceus PCC 7421]
          Length = 490

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE+   +R G      ++ +P  L PTL+      L   G
Sbjct: 322 GFQTNLKWGEQKRVFQMIPGLEQAEFVRLGVMHRNTFLCSPHLLAPTLQFHAHPRLLACG 381

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           Q+ GT GY  A A G +AG N+AR +   D +     ++  G ++D
Sbjct: 382 QLTGTEGYTAAVAGGWLAGTNAARLAQSRDPLVLP-VETMAGALVD 426


>gi|323341689|ref|ZP_08081922.1| tRNA:M(5)U-54 methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464114|gb|EFY09307.1| tRNA:M(5)U-54 methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 445

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IPGLE   I+R G      +I +P  L    ++K    LF AG
Sbjct: 295 GFQTRLKWGDQKRIIQMIPGLENAVIVRYGVMHRNTFIKSPLLLNHHYQSKTQPSLFFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q++G  GY E+AA GLVA +N A+
Sbjct: 355 QVSGVEGYVESAASGLVAALNMAQ 378


>gi|188997018|ref|YP_001931269.1| gid protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254789184|sp|B2V9U2|TRMFO_SULSY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|188932085|gb|ACD66715.1| gid protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 438

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     + D   + G+R    + L  E +   ++   G  T L    Q +    IP L
Sbjct: 240 YGPMKPVGLIDP--KTGKRPYAVVQLRKENIEGTLLSLVGFQTKLKYPEQKRIFSLIPAL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           +    ++ G      +I  ++L  PTL+ +K   +  AGQI G  GY  +AA G++AGIN
Sbjct: 298 KDAEFVKLGSIHRNTFIQSQKLLKPTLQLRKKPNILFAGQITGVEGYMASAATGIIAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTS-KGVLEP 423
            AR     + +   +T + IG +I+ +T+ K  L+P
Sbjct: 358 VARMLEGKEPVVPPKT-TMIGGLINYITTAKNELQP 392


>gi|218662138|ref|ZP_03518068.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli IE4771]
          Length = 302

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 116 GFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 175

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++
Sbjct: 176 QITGCEGYVESASVGLMAG-RFAAAERKGEAILLPPATTALGSLLGHITGGHIV 228


>gi|205830474|sp|Q7NFC3|TRMFO_GLOVI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 449

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE+   +R G      ++ +P  L PTL+      L   G
Sbjct: 281 GFQTNLKWGEQKRVFQMIPGLEQAEFVRLGVMHRNTFLCSPHLLAPTLQFHAHPRLLACG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           Q+ GT GY  A A G +AG N+AR +   D +     ++  G ++D
Sbjct: 341 QLTGTEGYTAAVAGGWLAGTNAARLAQSRDPLVLP-VETMAGALVD 385


>gi|205830467|sp|Q11HD9|TRMFO_MESSB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 468

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 152/406 (37%), Gaps = 71/406 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHL 58
           + VIGGG AG EAA  AA+ G    L           HKT  +  + C+         + 
Sbjct: 6   IHVIGGGLAGSEAAWQAAEAGVPVILHEMRPVRGTDAHKTDGLAELVCS---------NS 56

Query: 59  VREIDALDGLMGRVAD----AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            R  DA    +G +      A  +  R  +  + PA  G     DR+ +  A+ + I   
Sbjct: 57  FRSDDAQTNAVGLLHAEMRLAGSLIMRAGDANQVPA--GGALAVDRDGFSDAVTQAIHGH 114

Query: 115 ENLDVIQGEVAGF---NTEKNIISSIVMQDNSM---IRCSTVVLTTGTF--LRGVIHIGK 166
             + V++ EVAG      ++ II++  +   S+   IR  T       F  +  ++H   
Sbjct: 115 PLITVVREEVAGLPPSEWDQTIIATGPLTAPSLAEAIRQETGAEALAFFDAIAPIVHFDT 174

Query: 167 LKIPA----GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
           + +       R   +        ++    +  + +    A LDG+   + + E     + 
Sbjct: 175 IDMDTCWFQSRYDKAGPGGTGKDYINCPMNKEQYQAFVQALLDGEKTAFKEWEGTPYFDG 234

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
            +P   M ++               ET R   M+ +  +  +  D K+Y           
Sbjct: 235 CLPIEVMAER-------------GPETLRHGPMKPMGLTNAHKPDEKAYA---------- 271

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N         G  T + Y            Q +  R IPGLE     R G   
Sbjct: 272 VVQLRQDNALGTLYNMVGFQTKLKYAE----------QVRIFRMIPGLENAEFARLGGLH 321

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
              YIN P  L  TL+ K   GL  AGQI G  GY E+AA GL+AG
Sbjct: 322 RNTYINSPALLDITLQLKSRPGLRFAGQITGCEGYVESAAMGLMAG 367


>gi|218510625|ref|ZP_03508503.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli Brasil 5]
          Length = 263

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 77  GFQTKLKYGAQADIFRMIPGLESAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 136

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++      
Sbjct: 137 QITGCEGYVESASVGLMAG-RFAAAERKGEAILLPPATTALGSLLGHITGGHIV------ 189

Query: 428 TSRAEYRISLRPDNADNRLTP 448
           T     + S +P N +  L P
Sbjct: 190 TDEEPGKRSFQPMNINFGLFP 210


>gi|288573041|ref|ZP_06391398.1| gid protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568782|gb|EFC90339.1| gid protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   +GP     +E  +   GER    + L  +  +  V    G  T L    Q +  R 
Sbjct: 240 DTLCFGPLRPVGLEHPVT--GERFFAVVQLRQDNRDGSVYNIVGFQTNLKWGEQDRVFRL 297

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK-ISGLFLAGQINGTTGYEEAAAQGL 383
           IPGLE V  +R G      Y+N PK L   L  +     ++LAGQI+G  GY E+ A G+
Sbjct: 298 IPGLENVEFVRKGVMHRNIYVNAPKVLDGHLRFRGGAEDIYLAGQISGVEGYVESVAMGM 357

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV--LEPYR----MFTSRAEYRISL 437
           VA +N      +L    +   ++ IG +++ L+   V   +P      +F S  E RI L
Sbjct: 358 VAALNLLSSDMELPLPEWP-VETAIGALLNRLSDDTVKRFQPTNVNLGIFPSLGE-RIKL 415

Query: 438 RPD 440
           +P+
Sbjct: 416 KPE 418



 Score = 37.4 bits (85), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--- 52
          S  + V+G G AG EAA   A+ G +  L+          HKT     + C+ ++GG   
Sbjct: 3  SKRITVVGAGLAGSEAAWQIAERGVNVTLVEMRPKVSSPAHKTDLFAELVCSNSLGGDTE 62

Query: 53 -LGKGHLVREIDALDGLMGRVAD 74
              G L  E+ AL  L+ +VAD
Sbjct: 63 TTPAGILKSELRALGSLIMKVAD 85


>gi|116251819|ref|YP_767657.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|205830322|sp|Q1MHL2|TRMFO_RHIL3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|115256467|emb|CAK07551.1| putative glucose inhibited division protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 477

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 293 GFQTKLKYGAQADIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T         + 
Sbjct: 353 QITGCEGYVESASVGLMAG-RFAAAERKGEAISLPPATTALGSLLGHITGG------HLV 405

Query: 428 TSRAEYRISLRPDNADNRLTP 448
           T     + S +P N +  L P
Sbjct: 406 TDEEPGKRSFQPMNINFGLFP 426


>gi|241204428|ref|YP_002975524.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858318|gb|ACS55985.1| gid protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 293 GFQTKLKYGAQADIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG  +A +  K + I      + +G ++  +T         + 
Sbjct: 353 QITGCEGYVESASVGLLAGRFAAAE-RKGEAISLPPATTALGSLLGHITGG------HLV 405

Query: 428 TSRAEYRISLRPDNADNRLTP 448
           T     + S +P N +  L P
Sbjct: 406 TDEEPGKRSFQPMNINFGLFP 426


>gi|218459055|ref|ZP_03499146.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli Kim 5]
          Length = 319

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 202 GFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 261

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++
Sbjct: 262 QITGCEGYVESASVGLMAG-RFAAAERKGEAILLPPATTALGSLLGHITGGHIV 314


>gi|319783207|ref|YP_004142683.1| gid protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169095|gb|ADV12633.1| gid protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 469

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE  +  R G      YIN P  L  +L+ K   GL  AG
Sbjct: 289 GFQTKLKHAEQVRIFRTIPGLENADFARLGGLHRNTYINSPTLLDASLQLKSRPGLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAIGLLAG 367


>gi|313673071|ref|YP_004051182.1| gid protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939827|gb|ADR19019.1| gid protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 440

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 155/402 (38%), Gaps = 70/402 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + +IGGG AG EAA   A+   +  L           H+T  +  + C+ ++  +     
Sbjct: 11  ITIIGGGLAGSEAAFQLAEKKFNVVLYEMRPHKLTEAHQTGLMAELLCSNSLKSIDITNS 70

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E++ +  L+ ++A    I          PA  G     DR+L+   +   + + 
Sbjct: 71  NGLLKKELELMGSLLIKIAYETRI----------PA--GNALSVDRKLFAEKVTNILENH 118

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI----P 170
            N+ +I+ E+      + +I             +T  LT+  F R +I++ K  +     
Sbjct: 119 PNITIIREEITEIPNSRPLI------------IATGPLTSENFARNLINLTKDHLFFYDA 166

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
              + D+ + +    F K  +D G          D   +    T +++         F  
Sbjct: 167 ISPIVDADTINYEKVFFKSRYDKG----------DADYLNCPMTREEYE-------KFYF 209

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS--YGPRYCPSIEDKIVRFGER 288
           + I   ++E      + E  +     I    + S   K+  +GP     +E+ I   GE+
Sbjct: 210 ELINAEKVEF----RSFEKAKYYENCIPIEELASRGFKTLIFGPMRPVGLENPIT--GEK 263

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
               + L  E          G  T +  + Q +  R IPGLE V  +R G      YIN 
Sbjct: 264 YYAVVQLRKENKEGTAYNIVGFQTKMKIQEQKRVFRLIPGLENVEFLRYGSIHRNTYINA 323

Query: 349 KELFPTLETKKISG--LFLAGQINGTTGYEEAAAQGLVAGIN 388
             +    +  KI G  ++ AGQI+G  GY E+ A GL    +
Sbjct: 324 PNILE--DNYKIRGEDIYFAGQISGVEGYVESIASGLTVAFD 363


>gi|162448004|ref|YP_001621136.1| glucose inhibited division protein [Acholeplasma laidlawii PG-8A]
 gi|205830304|sp|A9NHD0|TRMFO_ACHLI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161986111|gb|ABX81760.1| glucose inhibited division protein [Acholeplasma laidlawii PG-8A]
          Length = 427

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           GE+    + L  + +N  +    G  T +    Q + I+ IPGLE   I+R G   +  Y
Sbjct: 251 GEKPYAVVQLRQDDVNKTMYNMVGFQTHMKWGDQKRVIQMIPGLENAEILRYGVIHKNTY 310

Query: 346 I-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           + +PK L    + + I   F AGQI+G  GY E+AA GL   IN
Sbjct: 311 LESPKHLNNAFQVRDIPKWFFAGQISGVEGYIESAASGLNVAIN 354


>gi|78356467|ref|YP_387916.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|123552688|sp|Q312C5|TRMFO_DESDG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78218872|gb|ABB38221.1| gid protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 458

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     ++D   R G R    + L  E LN  +    G  T L    Q +  R IPG
Sbjct: 260 AFGPFKPVGLDDP--RTGRRPFAVVQLRTENLNKTMFNLVGCQTKLKYGEQDRIFRMIPG 317

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE    +R G      Y+N P+ L      K    +FLAGQI G  GY E+AA G+  G+
Sbjct: 318 LEDAEFVRYGSVHRNTYVNAPQVLNGDQSLKNRPDVFLAGQITGVEGYVESAANGMWLGM 377

Query: 388 N-SARK 392
             +ARK
Sbjct: 378 MLAARK 383



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 25/132 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------------GKG 56
           ++GGG AGCE A   A+ G +  L   K  +      +P +G L             G G
Sbjct: 21  IVGGGLAGCECARKLARAGIAVTLFEMKPHSFSPAHSSPELGELVCSNSLRSDEPEAGVG 80

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E+ AL  L+  VA+A  +          PA  G     DR L+  +M   + ++  
Sbjct: 81  VLKQEMRALGSLVMEVAEATRV----------PA--GKALAVDRGLFAASMTAAMEAEPG 128

Query: 117 LDVIQGEVAGFN 128
           + +I+ E+   +
Sbjct: 129 ITLIRREITSLD 140


>gi|195952813|ref|YP_002121103.1| tRNA (uracil-5-)-methyltransferase Gid [Hydrogenobaculum sp.
           Y04AAS1]
 gi|254789174|sp|B4U7L4|TRMFO_HYDS0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|195932425|gb|ACG57125.1| gid protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 457

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L  + Q +  R IP L      R G      ++   +L  PTLE +K   +  AG
Sbjct: 301 GFQTKLTYKEQVRVFRLIPCLRNAVFSRLGSMHRNTFLQSNKLLKPTLELRKNPNILFAG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK-GVLEP 423
           QI G  GY  +AA G++AGIN+  K    +     +T + +G ++D ++SK G L+P
Sbjct: 361 QITGVEGYSASAATGIIAGINAWLKLEGKEPTTPPKT-TMLGALLDYISSKEGELQP 416



 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 17/106 (16%)

Query: 36  HKTSTIGSMSCNPAIGGL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
           HKT   G + C+  +G      G G L +E++ L+ L+ + A  +        VK G A+
Sbjct: 66  HKTDKFGELVCSNTLGSFEITTGAGLLKKEMELLNSLVIKAAKHS-------YVKAGSAL 118

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN-TEKNIISS 136
                  DR  +   + + ILS  N++V++ EV   N  E NI+++
Sbjct: 119 -----AVDRNEFSDFITKTILSHPNIEVVREEVESLNENELNIVAT 159


>gi|260459806|ref|ZP_05808060.1| gid protein [Mesorhizobium opportunistum WSM2075]
 gi|259034608|gb|EEW35865.1| gid protein [Mesorhizobium opportunistum WSM2075]
          Length = 469

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE  +  R G      YIN P  L  +L+ K   GL  AG
Sbjct: 289 GFQTKLKHAEQVRVFRTIPGLENADFARLGGLHRNTYINSPTLLDASLQLKSRPGLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAIGLLAG 367


>gi|327189119|gb|EGE56304.1| glucose inhibited division protein A [Rhizobium etli CNPAF512]
          Length = 478

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      YIN P  L P+L  K   GL  AG
Sbjct: 292 GFQTKLKYGAQADIFRMIPGLESAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++
Sbjct: 352 QITGCEGYVESASVGLMAG-RFAAAERKGEAILLPPATTALGSLLGHITGGHIV 404


>gi|13471167|ref|NP_102736.1| tRNA (uracil-5-)-methyltransferase Gid [Mesorhizobium loti
           MAFF303099]
 gi|26006771|sp|Q98LE1|TRMFO_RHILO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|14021911|dbj|BAB48522.1| glucose-inhibited division protein [Mesorhizobium loti MAFF303099]
          Length = 472

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE  +  R G      YIN P  L  +L+ K   GL  AG
Sbjct: 289 GFQTKLKHAEQVRVFRTIPGLENADFARLGGLHRNTYINSPTLLDQSLQLKSRPGLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAIGLLAG 367


>gi|256827138|ref|YP_003151097.1| tRNA:m(5)U-54 methyltransferase [Cryptobacterium curtum DSM 15641]
 gi|256583281|gb|ACU94415.1| tRNA:m(5)U-54 methyltransferase [Cryptobacterium curtum DSM 15641]
          Length = 530

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 180/473 (38%), Gaps = 76/473 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-- 52
           + Y V +IG G AG EAA   A  G    LI          H+T     + C+ ++    
Sbjct: 20  QKYHVNIIGAGLAGSEAALQLAARGIKVTLIESRPLFTDGVHETGLCAELVCSNSLKSES 79

Query: 53  --LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L RE+D L   + + A       R   V  G A+       DR  +  A+  +
Sbjct: 80  LSSAAGMLKRELDVLGSFLYQTA-------RETRVPAGGAL-----AVDRYAFAHAVTDQ 127

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVM--QDNSMIRCSTVVLTTG--------TFLRG 160
           + +  +++++ GE    + + +I   +    ++    +   V++ TG         F+ G
Sbjct: 128 VTAAPSINLVCGEALSVHADGSISLRVDKNGREEKTPKADAVIVATGPLTSDSFADFITG 187

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
           V     L           ++SL  + +   F   R + G    L+     + K E +   
Sbjct: 188 VTGQDNLSFFDAAAPIVMADSLDTNIL---FRQSRYEEGQGDYLNAP---FTKEEYE--- 238

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIM--ENIKHSAIYSGDIKSYGPRYCPSI 278
                  F+T  ++ +++     R + ET  +    + I+  A    D   +GP     +
Sbjct: 239 ------QFITALLSAKRV----VRRDFETKELFQACQPIEEIARAGVDAPRFGPLKPVGL 288

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
            D  +R  +R    + L  E          G  T L    Q +  + IPGLE+    R G
Sbjct: 289 VD--LRTHKRPWAALQLRAENREGTCYNLVGFQTNLTFPEQRRVFQMIPGLEQAEFARYG 346

Query: 339 YAIEYDYINPKELFPT---LETKKISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
                 +++  +L  +    +T++  G  LF AGQI GT GY EA   GL A      + 
Sbjct: 347 VMHRNTFMDAPQLLASDLSFKTERWQGVPLFAAGQITGTEGYCEAIRSGLHAAFGVVSRL 406

Query: 394 NKLDCICFSRTDSY--IGVMIDDLTSK---------GVLEPY--RMFTSRAEY 433
             L     SR  ++  + +   D T++         G++EP   R+   RA Y
Sbjct: 407 RNLTPPPLSRQMAFGSLWLWASDPTTEDYQPMHVNFGIIEPLAERVKNKRARY 459


>gi|256383910|gb|ACU78480.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384741|gb|ACU79310.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455963|gb|ADH22198.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 424

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
              T+L    Q +    IPGLE + I+R G   + +YIN K+L    ++ K    +F AG
Sbjct: 267 NFQTSLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNLGVQLKTNKNIFFAG 326

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY E+   GLV+ IN  R  N
Sbjct: 327 QIIGVDGYVESVCSGLVSAINLDRYLN 353


>gi|298492891|ref|YP_003723068.1| gid protein ['Nostoc azollae' 0708]
 gi|298234809|gb|ADI65945.1| gid protein ['Nostoc azollae' 0708]
          Length = 438

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 3/127 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     + D   R GE     I L  E     +    G  T L    Q +  + 
Sbjct: 240 DTMRYGPLKPVGLSDS--RTGESPYAVIQLRQEDKAHQLWNMVGFQTNLRWGEQKRVFQM 297

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLEK   +R G      ++N P+ +  +L+ K+   L  AGQ+ GT GY  A+A G +
Sbjct: 298 IPGLEKAEFVRLGVMHRNTFLNAPQLMSASLQFKERPTLLAAGQLIGTEGYTAASAGGWL 357

Query: 385 AGINSAR 391
           AG N+AR
Sbjct: 358 AGTNAAR 364


>gi|212704423|ref|ZP_03312551.1| hypothetical protein DESPIG_02479 [Desulfovibrio piger ATCC 29098]
 gi|212672144|gb|EEB32627.1| hypothetical protein DESPIG_02479 [Desulfovibrio piger ATCC 29098]
          Length = 453

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E LN +     G  T L    Q +  R +PGLEK    R G     
Sbjct: 272 RTGRRPWAILQLRAETLNGETCNLVGCQTKLTYGEQARVFRMVPGLEKAEFARFGSMHRN 331

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P  L   L  K    +FLAGQI G  GY E+AA G+  G+  A ++   + +   
Sbjct: 332 TYVNAPVALNEDLSLKARPRVFLAGQITGVEGYLESAACGMWLGMLLAARAQGRE-LALP 390

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             +  +G +++ L +     P + F          +P NA   L P
Sbjct: 391 PLECALGALLNHLRT-----PVKHF----------QPSNAHFGLMP 421


>gi|190891525|ref|YP_001978067.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
 gi|190696804|gb|ACE90889.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
          Length = 476

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL+     R G      YIN P  L P+L  K   GL  AG
Sbjct: 292 GFQTKLKYGAQAEIFRMIPGLQNAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+A+ GL+AG   A    K + I      + +G ++  +T   ++      
Sbjct: 352 QITGCEGYVESASVGLMAG-RFAAAERKGEAILLPPATTALGSLLGHITGGHIV------ 404

Query: 428 TSRAEYRISLRPDNADNRLTP 448
           T     + S +P N +  L P
Sbjct: 405 TDEEPGKRSFQPMNINFGLFP 425


>gi|154253481|ref|YP_001414305.1| gid protein [Parvibaculum lavamentivorans DS-1]
 gi|205830313|sp|A7HXL5|TRMFO_PARL1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154157431|gb|ABS64648.1| gid protein [Parvibaculum lavamentivorans DS-1]
          Length = 480

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +IN PK L P +   K   L  AG
Sbjct: 308 GFQTKLKHGEQTRVFRTIPGLEKAEFARLGGLHRNTFINSPKLLDPVMRLAKEPRLRFAG 367

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+ A GL+AG
Sbjct: 368 QITGVEGYVESGAMGLLAG 386


>gi|227498488|ref|ZP_03928634.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903946|gb|EEH89864.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 438

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 250 HRIIMEN---IKHSAIYSGDIKSYGPRYCPSIED--------KIVRFGERNGHQIFLEPE 298
           H ++ E    I+  A+   D   +GP     + D         +V+  + NG        
Sbjct: 219 HGMVFEGCMPIEEMAVRGEDTMRFGPLKPVGLPDPRTGEDPYAVVQLRQDNGAGSLFNMV 278

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
           G  T + +P           Q +  R IPGLE+   IR G   +  Y+N P  L      
Sbjct: 279 GFQTHLRWPE----------QKRVFRMIPGLEEAEFIRYGVMHKNSYLNSPLLLDADYSL 328

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +    L+ AGQ+ G  GY E+AA GL AGI  +R  +    + F R ++ IG +
Sbjct: 329 RSHPHLYFAGQMTGVEGYVESAASGLAAGIYLSRTLSGKAKLLFPR-ETAIGAL 381


>gi|226227914|ref|YP_002762020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid
           [Gemmatimonas aurantiaca T-27]
 gi|226091105|dbj|BAH39550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid
           [Gemmatimonas aurantiaca T-27]
          Length = 461

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGT 372
           +PE  Q +  R IPGL +   +R G      Y+N P  L P L  +       AGQI G 
Sbjct: 302 IPE--QARVFRMIPGLAEAEFLRYGSIHRNSYVNAPAALSPHLALRDAPTTLFAGQITGV 359

Query: 373 TGYEEAAAQGLVAGINSAR 391
            GY E++A G++AGIN +R
Sbjct: 360 EGYTESSATGMLAGINLSR 378


>gi|163759435|ref|ZP_02166520.1| glucose-inhibited division protein A [Hoeflea phototrophica DFL-43]
 gi|162283032|gb|EDQ33318.1| glucose-inhibited division protein A [Hoeflea phototrophica DFL-43]
          Length = 478

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + IR IPGLE     R G      Y+N P  L  +L+ +   GL  AG
Sbjct: 294 GFQTKLKYGAQAEIIRMIPGLENAEFARLGGLHRNTYLNSPLLLDGSLQLRSRPGLRFAG 353

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+AA GL+AG  +A + N  + +      +  G +++ +T   +L
Sbjct: 354 QITGCEGYVESAAMGLLAGRFAAAERNG-ELLAPPPPTTAFGALLNHITGGHIL 406


>gi|254423011|ref|ZP_05036729.1| tRNA:m(5)U-54 methyltransferase [Synechococcus sp. PCC 7335]
 gi|196190500|gb|EDX85464.1| tRNA:m(5)U-54 methyltransferase [Synechococcus sp. PCC 7335]
          Length = 462

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R +PGLE    +R G      +IN  EL   +L+ K    L  AG
Sbjct: 293 GFQTNLRWGEQKRVFRMVPGLENAEFVRMGVMHRNTFINSPELLNSSLQFKSRPNLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  A A G +AG N+AR +     +    T + +G ++D ++S
Sbjct: 353 QLVGTEGYTAAIAGGWLAGTNAARIALGKPPLTLPIT-TMLGALVDFISS 401


>gi|317057710|ref|YP_004106177.1| gid protein [Ruminococcus albus 7]
 gi|315449979|gb|ADU23543.1| gid protein [Ruminococcus albus 7]
          Length = 440

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN PK L      ++   L+ AG
Sbjct: 284 GFQTNLKFGEQKRVFSLIPGLENAEFMRYGVMHRNTFINSPKLLNEQFNMRERPSLYFAG 343

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA G+ AG+N AR+   L  +    T
Sbjct: 344 QMTGVEGYIESAASGIFAGLNMARQIQGLSPVSLPET 380


>gi|300022799|ref|YP_003755410.1| gid protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524620|gb|ADJ23089.1| gid protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 477

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGL+     R G      Y+N PK L  +L  K  S L  AG
Sbjct: 290 GFQTKLKHAEQVRVFRTIPGLQNAEFARLGGLHRNTYLNSPKLLDRSLRLKANSRLRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A ++   +      T + +G ++D +T
Sbjct: 350 QITGVEGYVESAAMGLLAGRFAAAQALGRETDAPPAT-TALGALLDHIT 397


>gi|162319788|ref|YP_421845.2| tRNA (uracil-5-)-methyltransferase Gid [Magnetospirillum magneticum
           AMB-1]
 gi|205830457|sp|Q2W4D9|TRMFO_MAGSA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 447

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      +IN P+ L  TL  K    L LAG
Sbjct: 283 GFQTKLRHGEQARIFRAIPGLENAEFARLGGLHRNTFINGPRVLDRTLRLKAQPRLRLAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           Q+ G  GY E++A GL+AG+ +A ++   D +    T + +G +++ +T     E Y+
Sbjct: 343 QVTGCEGYVESSAIGLLAGLFAAAEALGRDMLRPPAT-TALGALLNHVTGDAEAETYQ 399


>gi|121602120|ref|YP_988865.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella bacilliformis
           KC583]
 gi|166989559|sp|A1USB2|TRMFO_BARBK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|120614297|gb|ABM44898.1| gid protein [Bartonella bacilliformis KC583]
          Length = 464

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      Y++ P  L  TL  KK   L  AG
Sbjct: 291 GFQTKLKYSEQVRIFRTIPGLEKAEFARLGGLHRNTYLDSPTILDETLRLKKKPQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E++A GL+AG  +A + N        +T ++ G +++ +TS
Sbjct: 351 QITGCEGYVESSAIGLLAGRFAAAEYNNTYPSLPPKTTAF-GALLNHITS 399


>gi|77918020|ref|YP_355835.1| tRNA (uracil-5-)-methyltransferase Gid [Pelobacter carbinolicus DSM
           2380]
 gi|123574961|sp|Q3A7H9|TRMFO_PELCD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77544103|gb|ABA87665.1| cell division control protein GidA [Pelobacter carbinolicus DSM
           2380]
          Length = 459

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N H       G  T + YP           Q +  RTIPGL+     R G   
Sbjct: 268 VVQLRQDNLHATLFNMVGFQTKLTYPE----------QRRIFRTIPGLQDARFARLGSMH 317

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
              +IN P+ L   L       +F AGQI G  GY E+AA G +AG+ +A
Sbjct: 318 RNTFINAPRCLDQHLRLTSDPRMFFAGQITGVEGYVESAACGFLAGLFAA 367


>gi|237736956|ref|ZP_04567437.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420818|gb|EEO35865.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium mortiferum
           ATCC 9817]
          Length = 437

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL+ K    ++ AG
Sbjct: 281 GFQTNLKWGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTQLLDETLKLKTKDNIYFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G+ GY  + A G++A IN A R   K   I   R  S IG M+  +T +
Sbjct: 341 QITGSEGYVSSVATGMMAAINIAHRLEEKSSFILDDR--SAIGAMVKYITEE 390


>gi|82946422|dbj|BAE51286.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      +IN P+ L  TL  K    L LAG
Sbjct: 248 GFQTKLRHGEQARIFRAIPGLENAEFARLGGLHRNTFINGPRVLDRTLRLKAQPRLRLAG 307

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           Q+ G  GY E++A GL+AG+ +A ++   D +    T + +G +++ +T     E Y+
Sbjct: 308 QVTGCEGYVESSAIGLLAGLFAAAEALGRDMLRPPAT-TALGALLNHVTGDAEAETYQ 364


>gi|240850278|ref|YP_002971671.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
 gi|240267401|gb|ACS50989.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
          Length = 470

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  TL  K+   L  AG
Sbjct: 291 GFQTKLKYGEQIRIFRMIPGLEKAEFARLGGLHRNTYLNSPIILDQTLRLKQKKQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+AA GL+AG  +A + + +   C     +  G +++ +T   +++     
Sbjct: 351 QITGCEGYVESAAIGLLAGHFAAAEYHHIS-PCLPPQTTAFGALLNHITGGHIID----- 404

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
             +AE + S +P N +  L P    +   G+R   +  K +++
Sbjct: 405 -EKAETQ-SFQPMNINFGLFPPIASIRHSGKRLASKEKKLVKK 445


>gi|294083972|ref|YP_003550729.1| gid protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663544|gb|ADE38645.1| gid protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 453

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  +TIPGLE     R G      +IN P+ L P L  K +  +  AG
Sbjct: 290 GFQTKLKHAEQVRIFQTIPGLEDAQFARLGGLHRNTFINSPRLLDPQLRMKSMPRIRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+AA GL+AG  +A +    D       D+  G ++  +T   + + ++
Sbjct: 350 QITGVEGYVESAAIGLMAGQMAALELKGQDWTA-PPLDTAHGALLSHITGGAMADSFQ 406


>gi|42560917|ref|NP_975368.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81618854|sp|Q6MTM6|TMFO1_MYCMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|42492414|emb|CAE77010.1| glucose-inhibited division protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320811|gb|ADK69454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 424

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
              T+L    Q +    IPGLE + I+R G   + +YIN K+L    ++ K    +F AG
Sbjct: 267 NFQTSLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNLGVQLKTNKNIFFAG 326

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY E+   GL++ IN  R  N
Sbjct: 327 QIIGVDGYVESVCSGLISAINLDRYLN 353


>gi|209964368|ref|YP_002297283.1| glucose inhibited division protein [Rhodospirillum centenum SW]
 gi|209957834|gb|ACI98470.1| glucose inhibited division protein [Rhodospirillum centenum SW]
          Length = 457

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N P+ L P L  K +  L  AG
Sbjct: 290 GFQTKLKYAEQTRVFRMIPGLENAEFARLGGMHRNTFLNSPRLLDPVLRLKAMPRLRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+AA GL+AG  +A +    D I    T + +G +++ +T     E ++
Sbjct: 350 QITGCEGYVESAAVGLLAGRFAAAERLGRDPIIPPAT-TALGALLNHITGGAEAETFQ 406


>gi|94971655|ref|YP_593703.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Koribacter
           versatilis Ellin345]
 gi|205830305|sp|Q1IHM1|TRMFO_ACIBL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94553705|gb|ABF43629.1| gid protein [Candidatus Koribacter versatilis Ellin345]
          Length = 444

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E L  D     G    L    Q + +R IPGLE    +R G      YIN P  L
Sbjct: 264 VQLRQENLRADSYNLVGFQNHLKYGDQARVMRLIPGLENAKFLRYGQIHRNTYINSPTLL 323

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
             TL  K+   +F AGQI+G  GY E+ A G +AG++
Sbjct: 324 TETLRMKEHPNVFFAGQISGVEGYVESIATGQMAGMH 360


>gi|147774864|emb|CAN62514.1| hypothetical protein VITISV_035600 [Vitis vinifera]
          Length = 76

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N  YDVIV+GGGHAGCEAA  +A+LGA T L+T
Sbjct: 28 NERYDVIVVGGGHAGCEAALASARLGAKTLLLT 60


>gi|256831005|ref|YP_003159733.1| gid protein [Desulfomicrobium baculatum DSM 4028]
 gi|256580181|gb|ACU91317.1| gid protein [Desulfomicrobium baculatum DSM 4028]
          Length = 433

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +   TIPGL     +R G      Y+  P+ L PTLE +   G +LAG
Sbjct: 284 GFQTKLKYGEQKRIFLTIPGLAHAEFLRMGSIHRNTYVLAPEVLTPTLELRGRPGTYLAG 343

Query: 368 QINGTTGYEEAAAQGLVAGI 387
           QI+G  GY E+AA GL  G+
Sbjct: 344 QISGVEGYLESAATGLWLGL 363


>gi|148377414|ref|YP_001256290.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma agalactiae PG2]
 gi|205830311|sp|A5IXT6|TRMFO_MYCAP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|148291460|emb|CAL58845.1| Glucose inhibited division protein [Mycoplasma agalactiae PG2]
          Length = 427

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           +R  E     + L  +  N + +      T++    Q++ I+ +P L    I+R G   +
Sbjct: 245 IRQTENTYATVLLREDDYNENFLRIVNFQTSIKIPWQNEIIKAVPALANALILRYGVMHK 304

Query: 343 YDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
            DYIN   +     + K    +F AGQ+ GT GY EA+A  ++  IN  R
Sbjct: 305 NDYINSANVLDDNFQLKSNPNIFFAGQLTGTDGYVEASASAIICAINVDR 354


>gi|95929068|ref|ZP_01311813.1| gid protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134969|gb|EAT16623.1| gid protein [Desulfuromonas acetoxidans DSM 684]
          Length = 450

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +++  + N H       G  T + YP           Q +  RTIPGLEK    R G   
Sbjct: 270 VIQLRQDNRHATSYNIVGFQTKLTYPE----------QRRIFRTIPGLEKAEFERLGSVH 319

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
              +IN P+ L   L+      L+ AGQI G  GY E+AA G +AG+ +A
Sbjct: 320 RNTFINAPRCLNGRLQLTSDPRLYFAGQITGVEGYVESAACGYLAGLIAA 369



 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 25/140 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK--- 55
           + +IGGG AGCEAA  AA+LG    L+          H +  +  + C+ ++ G G    
Sbjct: 13  LTIIGGGLAGCEAAWQAAELGIDVCLLEMKPIQFSPAHHSEGLAELVCSNSLRGTGMNNA 72

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+   + L  + ADA  +          PA  G     DRE +   +  +I + 
Sbjct: 73  VGCLKEELRRANCLFMQAADATAV----------PA--GGALAVDREAFSDWVGNKIAAH 120

Query: 115 ENLDVIQGEVAGFNTEKNII 134
            ++ +++ EV     +  +I
Sbjct: 121 SHITLMREEVTTLPEQGPVI 140


>gi|16331423|ref|NP_442151.1| tRNA (uracil-5-)-methyltransferase Gid [Synechocystis sp. PCC 6803]
 gi|26006760|sp|Q55692|TRMFO_SYNY3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|1001593|dbj|BAA10221.1| glucose inhibited division protein A [Synechocystis sp. PCC 6803]
          Length = 456

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L  +L       LF AG
Sbjct: 292 GFQTNLRWGEQGRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTASLHFGDRQTLFAAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ GT GY  A A G +AG N+AR
Sbjct: 352 QLVGTEGYAAATAGGWLAGTNAAR 375


>gi|91977243|ref|YP_569902.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisB5]
 gi|123762693|sp|Q136I8|TRMFO_RHOPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|91683699|gb|ABE40001.1| gid protein [Rhodopseudomonas palustris BisB5]
          Length = 477

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L P L  +    L  AG
Sbjct: 295 GFQTKLNYGAQQRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDPQLRLRAAPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A  GLVAG+ +A
Sbjct: 355 QMTGCEGYVESAGIGLVAGLCAA 377


>gi|117926758|ref|YP_867375.1| gid protein [Magnetococcus sp. MC-1]
 gi|205830339|sp|A0LDC6|TRMFO_MAGSM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|117610514|gb|ABK45969.1| gid protein [Magnetococcus sp. MC-1]
          Length = 439

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +   TIPGLE+   +R G      +IN P  L  TL+ K    L  AG
Sbjct: 282 GFQTKLSWPAQKRIFATIPGLEQAEFVRLGALHRNTFINSPTLLSETLQLKTQPRLLFAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           QI G  GY E+ A GL+AG   A K  + + +      + +G ++  +T + 
Sbjct: 342 QITGVEGYVESTACGLMAGRIVAHKM-RGEAVSIPPQTTALGALMRHITGEA 392


>gi|213417802|ref|ZP_03350912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 61

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 39/53 (73%)

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK
Sbjct: 1   MLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKK 53


>gi|167771634|ref|ZP_02443687.1| hypothetical protein ANACOL_03006 [Anaerotruncus colihominis DSM
           17241]
 gi|167666274|gb|EDS10404.1| hypothetical protein ANACOL_03006 [Anaerotruncus colihominis DSM
           17241]
          Length = 440

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 149/425 (35%), Gaps = 82/425 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AGCEAA   A  G    L           H +     + C+ ++     G  
Sbjct: 3   VHVIGAGLAGCEAAWALANQGIRVCLYEMKPQRFSPAHHSEQFAELVCSNSLKARRLGSA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L    A+A        +V  G A+       DR+ +   + + I + 
Sbjct: 63  AGMLKEEMRMLGSLTVACAEAT-------SVAAGGAL-----AVDRDAFSALVTKHIRAH 110

Query: 115 ENLDVIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK---- 168
             ++V+ GEV     ++   I +  +  D    R S +   T +F      I   +    
Sbjct: 111 ALIEVVSGEVTDIPLDRLTVIATGPLTSDALAARISELCGGTLSFYDAAAPIVTYESLDL 170

Query: 169 ---IPAGRMGDSPSNSLFNSFMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADERL 223
                A R      + +   F K +++     L+T  PA L      +D+ EK+   E  
Sbjct: 171 DRVFFAARYDRGDGDYINCPFNKEEYEAFYEALRTAEPAPLHD----FDQAEKRVY-EGC 225

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
           +P   M  +                                 D   YGP     + +   
Sbjct: 226 MPIEIMARR-------------------------------GPDTIRYGPLKPVGLRNP-- 252

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E     +    G  T L    Q +    IPGL     +R G     
Sbjct: 253 RTGHRPWAVVQLRRENSAGTLYNLVGFQTNLRFGEQKRVFSMIPGLAHAEFMRYGVMHRN 312

Query: 344 DYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-------K 395
            +I +P  L  T+  ++   ++ AGQI G  GY E+A  G++ G   AR+          
Sbjct: 313 TFIGSPWLLDETMRMREHDRIYFAGQITGVEGYMESAMSGILTGRQIARRLQGKEPLKLP 372

Query: 396 LDCIC 400
           LDC+C
Sbjct: 373 LDCMC 377


>gi|299139068|ref|ZP_07032244.1| gid protein [Acidobacterium sp. MP5ACTX8]
 gi|298598748|gb|EFI54910.1| gid protein [Acidobacterium sp. MP5ACTX8]
          Length = 453

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E L  D     G   +L    Q + +R IPGLE    +R G      Y++ P  L
Sbjct: 278 VQLRQENLRADSYNLVGFQNSLKYGEQARVLRMIPGLEHATFLRYGQIHRNTYLHAPSLL 337

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
             TL+ K   G+ +AGQ++G  GY E+ A GL+AG  +A
Sbjct: 338 TETLQLKAHPGILIAGQLSGIEGYTESIASGLLAGRYAA 376


>gi|331703367|ref|YP_004400054.1| methylenetetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801922|emb|CBW54075.1| Methylenetetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 424

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
              T L    Q +    IPGLE + I+R G   + +YIN K+L    ++ K    +F AG
Sbjct: 267 NFQTNLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNLGVQLKTHKNIFFAG 326

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY E+   GL++ IN  R  N
Sbjct: 327 QIIGVDGYVESVCSGLISAINLDRYLN 353


>gi|289523582|ref|ZP_06440436.1| tRNA:M(5)U-54 methyltransferase [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503274|gb|EFD24438.1| tRNA:M(5)U-54 methyltransferase [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 445

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+    R G      Y+N P  L   L  K    LFLAG
Sbjct: 285 GFQTNLRWSEQGRIFRLIPGLEEAEFARYGVMHRNIYVNAPVVLDEYLRLKGFDDLFLAG 344

Query: 368 QINGTTGYEEAAAQGLVAGIN 388
           Q+ G  GY E+ A GLVA +N
Sbjct: 345 QLAGVEGYVESTAMGLVAALN 365



 Score = 40.4 bits (93), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V ++GGG AG EAA   AK G    L           H+TS    + C+ ++G       
Sbjct: 13  VTIVGGGLAGSEAAYQLAKRGIKVRLYEMRPKKYPPAHRTSKFAELVCSNSLGSDVLSSP 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD          + K PA  G     DRE +   +   I S 
Sbjct: 73  AGILKAELRELDSLIIKCAD----------LHKVPA--GWALAVDREAFSEEVTSRIGSM 120

Query: 115 ENLDVIQGEVAGFNTEKNIISS 136
            ++++I+ EV        I++S
Sbjct: 121 PSVEIIRDEVEKIGGGPAIVAS 142


>gi|303328649|ref|ZP_07359051.1| gid protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861241|gb|EFL84213.1| gid protein [Desulfovibrio sp. 3_1_syn3]
          Length = 236

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E  N++     G  T L +  Q +  R +PGLE+    R G     
Sbjct: 139 RTGRRPWAVLQLRAENANSETCNLVGCQTKLTQPEQARVFRLVPGLERAEFARYGSMHRN 198

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
            Y+N P+ L   L  K    +FLAGQI G  GY E+AA
Sbjct: 199 TYVNAPEALNADLSLKTCPHVFLAGQITGVEGYVESAA 236


>gi|303228925|ref|ZP_07315735.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516339|gb|EFL58271.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 438

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     + DK  R  E +   + L  E     +    G  T L    Q +    
Sbjct: 239 DTLRYGPLKPVGLVDK--RTNEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGL 296

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    IR G      YIN  EL     + +    LF AGQ+ G  GY E+AA GL+
Sbjct: 297 IPGLENAEFIRYGVMHRNTYINSPELLNHAFQLQSDHRLFFAGQMTGVEGYLESAASGLM 356

Query: 385 AGINSARKSNKLDCICFSRT 404
            G+   R  +    I F +T
Sbjct: 357 VGLQVKRYLDDNAFINFPKT 376


>gi|162453390|ref|YP_001615757.1| gid protein [Sorangium cellulosum 'So ce 56']
 gi|205830340|sp|A9FRC1|TRMFO_SORC5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161163972|emb|CAN95277.1| gid protein [Sorangium cellulosum 'So ce 56']
          Length = 477

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     + D   R G R    + L PE          G  T +    Q +  R +PG
Sbjct: 282 AFGPMKPVGLTDP--RTGRRPYAVLQLRPEDEAATAYNLVGFQTRMKYAEQLRVFRMVPG 339

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE+   +R G      +++ P  L P +E + + G+ LAGQI G  GY E+AA G +  I
Sbjct: 340 LEEAEFLRMGSVHRNTFVDAPALLGPAMELRALPGVHLAGQIAGVEGYVESAAAGFLCAI 399


>gi|150396397|ref|YP_001326864.1| tRNA (uracil-5-)-methyltransferase Gid [Sinorhizobium medicae
           WSM419]
 gi|166989566|sp|A6U8P9|TRMFO_SINMW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|150027912|gb|ABR60029.1| gid protein [Sinorhizobium medicae WSM419]
          Length = 480

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      YIN P  L  +L  K  +GL  AG
Sbjct: 294 GFQTKLKYGAQGEVFRMIPGLEKAEFARLGGLHRNTYINSPTLLDQSLTLKSRAGLRFAG 353

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 354 QITGCEGYVESASIGLLAG 372


>gi|66576100|gb|AAY51657.1| mitochondrial MTO1 [Nasalis larvatus]
          Length = 50

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 32/41 (78%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           E+Q + I  I GLEK  +++PGY ++YDY++P+++ P+LET
Sbjct: 1   ELQEKMITCIRGLEKAKVMQPGYGVQYDYLDPRQITPSLET 41


>gi|15805245|ref|NP_293933.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus radiodurans R1]
 gi|6457879|gb|AAF09795.1|AE001883_1 gid protein [Deinococcus radiodurans R1]
          Length = 482

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   ++ IPGL   +I+R G      Y+N P+ L  TL+ +      +AG
Sbjct: 295 GFQTGLKWGDQKAVVQLIPGLHNADIVRYGVMHRNTYLNAPEVLDSTLQLRADPQKLVAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + GT GY E++A G +AG N+AR +  L+ +     +S +G ++  L S
Sbjct: 355 VLAGTEGYLESSATGWLAGTNAARLALGLEPLT-PPAESMLGGLVRYLAS 403


>gi|222100824|ref|YP_002535392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Thermotoga neapolitana DSM 4359]
 gi|254789185|sp|B9KAP3|TRMFO_THENN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221573214|gb|ACM24026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Thermotoga neapolitana DSM 4359]
          Length = 435

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + I+ IP L    I+R G      YIN P+ L P    KK   +F AG
Sbjct: 277 GFQTRLKWGEQKKVIQKIPCLRNAEIVRYGVMHRNIYINSPRVLDPFFRLKKHPSVFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA G+    N  R
Sbjct: 337 QITGVEGYMESAASGIYVAYNVYR 360


>gi|313665486|ref|YP_004047357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
 gi|312949558|gb|ADR24154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
          Length = 423

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
              T L    Q +    IPGLE + I+R G   + +YIN K+L    ++ K    +F AG
Sbjct: 267 NFQTNLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNLGVQLKTHKNIFFAG 326

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY E+   GL+  IN  R  N
Sbjct: 327 QIIGVDGYVESVCSGLITAINLDRYLN 353


>gi|26006777|sp|Q9RXU7|TRMFO_DEIRA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 465

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   ++ IPGL   +I+R G      Y+N P+ L  TL+ +      +AG
Sbjct: 278 GFQTGLKWGDQKAVVQLIPGLHNADIVRYGVMHRNTYLNAPEVLDSTLQLRADPQKLVAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
            + GT GY E++A G +AG N+AR +  L+ +     +S +G ++  L S
Sbjct: 338 VLAGTEGYLESSATGWLAGTNAARLALGLEPLT-PPAESMLGGLVRYLAS 386


>gi|319405546|emb|CBI79165.1| gid-family protein [Bartonella sp. AR 15-3]
          Length = 460

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  +L  K+   L  AG
Sbjct: 291 GFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLHRNTYLNSPILLDESLRLKQKPQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+AA GL+AG  +A + N   C       +  G +++ +T   ++
Sbjct: 351 QITGCEGYIESAAIGLLAGRFAAAEYNH-ACPSLPPKTTAFGALLNHITGGHIV 403


>gi|303231425|ref|ZP_07318156.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513862|gb|EFL55873.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 438

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      YIN  EL     + +    LF AG
Sbjct: 280 GFQTHLKWGEQKRVFGLIPGLENAEFIRYGVMHRNTYINSPELLNHAFQLQSDHRLFFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Q+ G  GY E+AA GL+ G+   R  +    I F +T
Sbjct: 340 QMTGVEGYLESAASGLMVGLQVKRYLDDNAFINFPKT 376


>gi|237757173|ref|ZP_04585596.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690664|gb|EEP59849.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 438

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
           YGP     + D   + G+R    + L  E +   ++   G  T L    Q +    IP L
Sbjct: 240 YGPMKPVGLIDP--KTGKRPYAVVQLRKENIEGTLLSLVGFQTKLKYPEQKRIFSLIPAL 297

Query: 330 EKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
           +    ++ G      +I  ++L  PTL+ ++   +  AGQI G  GY  +AA G++AGIN
Sbjct: 298 KDAEFVKLGSIHRNTFIQSQKLLKPTLQLREKPNILFAGQITGVEGYMASAATGIIAGIN 357

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTS-KGVLEP 423
             R     + +   +T + IG +I+ +T+ K  L+P
Sbjct: 358 VVRMLEGKEPVIPPKT-TMIGGLINYITTAKNELQP 392


>gi|225849723|ref|YP_002729957.1| tRNA (uracil-5-)-methyltransferase Gid [Persephonella marina EX-H1]
 gi|254789175|sp|C0QTE2|TRMFO_PERMH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225645289|gb|ACO03475.1| tRNA:M(5)U-54 methyltransferase [Persephonella marina EX-H1]
          Length = 436

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +++  + N     L   G  T + YP           Q +  R IP L+    +R G   
Sbjct: 262 VIQLRKENREGTLLSLVGFQTKLKYPE----------QKRIFRLIPALKDATFVRLGSIH 311

Query: 342 EYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
              +I    +  PTL+ KK   +  AGQI G  GY  +AA G++AGIN  R
Sbjct: 312 RNTFIQSHRVLKPTLQLKKDPRILFAGQITGVEGYAASAATGILAGINVVR 362


>gi|319898781|ref|YP_004158874.1| gid-family protein [Bartonella clarridgeiae 73]
 gi|319402745|emb|CBI76292.1| gid-family protein [Bartonella clarridgeiae 73]
          Length = 456

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  +L  K+   L  AG
Sbjct: 287 GFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLHRNTYLNSPILLDESLRLKQKPQLRFAG 346

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A + N   C       +  G +++ +T
Sbjct: 347 QITGCEGYIESAAIGLLAGRFAAAEYNHA-CPSLPPKTTAFGALLNHIT 394


>gi|319404103|emb|CBI77693.1| gid-family protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 459

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  +L  K+   L  AG
Sbjct: 291 GFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLHRNTYLNSPILLDESLRLKQKPQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A + N   C       +  G +++ +T
Sbjct: 351 QITGCEGYIESAAIGLLAGRFAAAEYNHA-CPSLPPKTTAFGALLNHIT 398


>gi|291320082|ref|YP_003515340.1| glucose inhibited division protein [Mycoplasma agalactiae]
 gi|290752411|emb|CBH40382.1| Glucose inhibited division protein [Mycoplasma agalactiae]
          Length = 427

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE-L 351
           + L  +  N + +      T++    Q++ I+ +  L    I+R G   + DY+N    L
Sbjct: 255 VLLREDDYNENFLRIVNFQTSIKIPWQNEIIKAVSALANALILRYGVMHKNDYLNSANVL 314

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           +   + K    +F AGQ+ GT GY EA+A  ++  IN  R  N L
Sbjct: 315 YDNFQLKSNPNIFFAGQLTGTDGYVEASASAIICAINVDRYLNNL 359


>gi|94498570|ref|ZP_01305125.1| putative glucose-inhibited division protein (gid) [Sphingomonas sp.
           SKA58]
 gi|94422013|gb|EAT07059.1| putative glucose-inhibited division protein (gid) [Sphingomonas sp.
           SKA58]
          Length = 447

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +I +PK L  TL  K    +  AG
Sbjct: 289 GFQTKLKHGAQVELFRTIPGLEKAEFARLGGLHRNTFIQSPKLLDATLRLKSAPHIRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 349 QMTGCEGYVESAAIGLLAG 367


>gi|294011442|ref|YP_003544902.1| glucose inhibited division protein Gid [Sphingobium japonicum
           UT26S]
 gi|292674772|dbj|BAI96290.1| glucose inhibited division protein Gid [Sphingobium japonicum
           UT26S]
          Length = 445

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +I +PK L  TL  K    +  AG
Sbjct: 287 GFQTKLKHGAQVELFRTIPGLEKAEFARLGGLHRNTFIQSPKLLDGTLRLKSAPHIRFAG 346

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 347 QVTGCEGYVESAAIGLLAG 365


>gi|226355403|ref|YP_002785143.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus deserti VCD115]
 gi|226317393|gb|ACO45389.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme (glucose inhibited division protein) [Deinococcus
           deserti VCD115]
          Length = 462

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   +  IPGLE   I+R G      Y+N P+ L  TL+ +      +AG
Sbjct: 280 GFQTGLKWGDQKAVVSLIPGLENAEIVRYGVMHRNTYLNAPEVLNATLQLRADPTKLVAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
            + GT GY E+A  G +AG N+AR
Sbjct: 340 VLAGTEGYLESAGTGWLAGTNAAR 363



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 27/162 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLG---- 54
           + VIG G AG EAA  AA+LG    L           H+++    + C+ ++GG G    
Sbjct: 8   ITVIGAGLAGSEAALAAARLGVRVRLHEMRPTRMTPAHRSANFAELVCSNSLGGEGEKQS 67

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ ++ G +   ADA+ +          PA  G     +R+ +   + R I   
Sbjct: 68  KGLLQAELRSVGGAVVTAADASRL----------PA--GNALAVERDEFSARVTRTIREH 115

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             ++VI+GEVA       +I+S  +  +++   + V   TG+
Sbjct: 116 PLIEVIEGEVAAVPAGIAVIASGPLTSDAL--AADVARLTGS 155


>gi|328954305|ref|YP_004371639.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454629|gb|AEB10458.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfobacca acetoxidans DSM 11109]
          Length = 435

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R +PGLE+    R G      +I+ P  L   L       LFL G
Sbjct: 280 GFQTRLKYGEQRRVLRLLPGLEQAEFARLGSVHRNTFIHSPGLLTRFLNFAARPQLFLGG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           QI G  GY E+ A G +AG+N+AR + +   +     ++ +G ++  +T+  V
Sbjct: 340 QITGVEGYLESTAMGWLAGVNAARLARQQPLLS-PPPETAMGALVRHITNTEV 391


>gi|16126835|ref|NP_421399.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter crescentus
           CB15]
 gi|221235617|ref|YP_002518054.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter crescentus
           NA1000]
 gi|26006774|sp|Q9A566|TRMFO_CAUCR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13424169|gb|AAK24567.1| GidA family protein [Caulobacter crescentus CB15]
 gi|220964790|gb|ACL96146.1| glucose inhibited division protein A [Caulobacter crescentus
           NA1000]
          Length = 474

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L   +Q +  R IPGLE     R G      +IN PK L  +L  K    L  AG
Sbjct: 303 GFQTKLKHGVQAETFRMIPGLEDAQFARLGGLHRNTFINSPKLLDKSLRMKAQPRLRFAG 362

Query: 368 QINGTTGYEEAAAQGLVAGINSA--RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           Q+ G  GY E+AA GL+ G  +A  RK   +D        + +G +++ +T  G LE
Sbjct: 363 QVTGVEGYVESAAMGLLTGRFAAADRKGAPIDA---PPPTTALGALVEHITG-GHLE 415


>gi|283853638|ref|ZP_06370872.1| gid protein [Desulfovibrio sp. FW1012B]
 gi|283570971|gb|EFC18997.1| gid protein [Desulfovibrio sp. FW1012B]
          Length = 439

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 75/182 (41%), Gaps = 20/182 (10%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     + D   R G R    + L PE      +   G  T L    Q +  R IP 
Sbjct: 244 TFGPMKPVGLTDP--RTGRRPYAVVQLRPENAAKSTLNLVGFQTKLAYGEQERVFRLIPA 301

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           L      R G      ++N PK L   LE     G++LAGQI G  GY E+AA GL  G 
Sbjct: 302 LHAAEFTRLGSIHRNTFVNAPKVLNDRLELVARPGVYLAGQITGVEGYVESAACGLWLGT 361

Query: 388 N-SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
              AR +  L+ I     ++ +G ++  L +     P + F          +P N +  L
Sbjct: 362 QLGARIARGLN-IAPPPVEAALGALLGHLRT-----PAKKF----------QPSNVNFGL 405

Query: 447 TP 448
           TP
Sbjct: 406 TP 407



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
            + +IGGG AGCE A   A+ G ++ +   K +       +P +  L   + +R  + + 
Sbjct: 2   SIAIIGGGLAGCECALALARAGVASTVFEAKPARFSPAHVSPQLAELVCSNSLRSDEPVT 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLDVIQGEV 124
            +     + A +   V+ V +  AV   +  A DREL+  AM   I ++  + + + E+
Sbjct: 62  AVGLLKVEMAALGSAVIAVARETAVPAGKALAVDRELFAAAMTARIEAEPLVTLTRQEI 120


>gi|319407117|emb|CBI80754.1| gid-family protein [Bartonella sp. 1-1C]
          Length = 459

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      Y+N P  L  +L  K+   L  AG
Sbjct: 291 GFQTKLKYSEQTRIFRMIPGLEKAAFARLGGLHRNTYLNSPILLDESLRLKQKPQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A + N   C       +  G +++ +T
Sbjct: 351 QITGCEGYIESAAIGLLAGRFAAAEYNHA-CPSLPPKTTAFGALLNHIT 398


>gi|291542639|emb|CBL15749.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus bromii L2-63]
          Length = 435

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IP L   + +R G      +++ P+ L      K    LF AG
Sbjct: 279 GFQTNLKFPEQKRVFSLIPALHNADFVRYGVMHRNTFLDSPRILNSDFSVKDNHSLFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           QI G  GY E+AA G++AGIN+ R +     I     D+ IG +
Sbjct: 339 QITGVEGYMESAASGIMAGINACRVAEGKSTITLP-NDTMIGAL 381


>gi|295688524|ref|YP_003592217.1| gid protein [Caulobacter segnis ATCC 21756]
 gi|295430427|gb|ADG09599.1| gid protein [Caulobacter segnis ATCC 21756]
          Length = 475

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L   +Q +  R IPGLE     R G      +IN PK L  +L  K    L  AG
Sbjct: 303 GFQTKLKHGVQAETFRMIPGLENAQFARLGGLHRNTFINSPKLLDKSLRMKAQPRLRFAG 362

Query: 368 QINGTTGYEEAAAQGLVAGINSA--RKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+ G  +A  RK   +D        + +G +++ +T
Sbjct: 363 QVTGVEGYVESAAMGLLTGRFAAADRKGAPIDA---PPPTTALGALVEHIT 410


>gi|46202952|ref|ZP_00052330.2| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 507

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      Y++ P+ L  TL  K    L  AG
Sbjct: 321 GFQTKLRHAEQVRVFRTIPGLEKAEFARLGGLHRNTYLDSPRLLDATLRLKARPSLRFAG 380

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 381 QITGCEGYVESAAVGLMAG 399


>gi|254420020|ref|ZP_05033744.1| tRNA:m(5)U-54 methyltransferase [Brevundimonas sp. BAL3]
 gi|196186197|gb|EDX81173.1| tRNA:m(5)U-54 methyltransferase [Brevundimonas sp. BAL3]
          Length = 464

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L   +Q +  R IPGL+     R G      Y+N P+ L   L  K +  L  AG
Sbjct: 295 GFQTKLKHGVQAEVFRMIPGLQNAQFARLGGLHRNTYLNSPQLLDKQLRLKAMPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           Q+ G  GY E+AA GL+ G  +A ++   D +     ++ +G +++ +T  G LE
Sbjct: 355 QVTGVEGYVESAAMGLLTGRLAAAQALGRD-VSAPPPETAMGALVEHITG-GHLE 407


>gi|75908696|ref|YP_322992.1| tRNA (uracil-5-)-methyltransferase Gid [Anabaena variabilis ATCC
           29413]
 gi|123609418|sp|Q3MA89|TRMFO_ANAVT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|75702421|gb|ABA22097.1| Gid protein [Anabaena variabilis ATCC 29413]
          Length = 438

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     + D   R GER    + L  E     +    G  T L    Q +  + 
Sbjct: 240 DTMRYGPVKPVGLSDS--RTGERPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFQM 297

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLEK   +R G      +IN P+ + PTL+ K+   L  AGQ+ GT GY  AAA G +
Sbjct: 298 IPGLEKAEFVRLGVMHRNTFINAPQLMLPTLQFKQRPTLLAAGQLIGTEGYTAAAAGGWL 357

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           AG N+AR +   + +    T + +G +++ ++S
Sbjct: 358 AGTNAARLALGKEPLALPPT-TMLGALLEFISS 389


>gi|17232063|ref|NP_488611.1| tRNA (uracil-5-)-methyltransferase Gid [Nostoc sp. PCC 7120]
 gi|26006767|sp|Q8YNJ4|TRMFO_NOSS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|17133707|dbj|BAB76270.1| glucose-inhibited division protein [Nostoc sp. PCC 7120]
          Length = 438

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     + D   R GER    + L  E     +    G  T L    Q +  + 
Sbjct: 240 DTMRYGPVKPVGLSDS--RTGERPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFQM 297

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLEK   +R G      +IN P+ + PTL+ K+   L  AGQ+ GT GY  AAA G +
Sbjct: 298 IPGLEKAEFVRLGVMHRNTFINAPQLMLPTLQFKQRPTLLAAGQLIGTEGYTAAAAGGWL 357

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           AG N+AR +   + +    T + +G +++ ++S
Sbjct: 358 AGTNAARLALGKEPLALPPT-TMLGALLEFISS 389


>gi|296284147|ref|ZP_06862145.1| tRNA (uracil-5-)-methyltransferase Gid [Citromicrobium
           bathyomarinum JL354]
          Length = 455

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      +IN P  L   L  K  + +  AG
Sbjct: 295 GFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRNTFINSPLVLDRQLRLKNAAHIRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E++A GL+AG+  A +    D     RT + +G ++  +T     E ++
Sbjct: 355 QITGCEGYVESSAIGLLAGLMVAAEHRGEDWSPPPRT-TALGALLSHVTGDAEAETFQ 411


>gi|85859216|ref|YP_461418.1| tRNA (uracil-5-)-methyltransferase Gid [Syntrophus aciditrophicus
           SB]
 gi|123516460|sp|Q2LT41|TRMFO_SYNAS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|85722307|gb|ABC77250.1| glucose inhibited division protein A [Syntrophus aciditrophicus SB]
          Length = 441

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL      R G      +IN P  L  TL+ K    +F AG
Sbjct: 282 GFQTKLTWTEQRRIFRMIPGLGNAEFARYGSIHRNTFINSPALLEKTLQLKTAEHIFFAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+ A GL+AG+ S  + +K         ++ +G +++ +T
Sbjct: 342 QITGVEGYIESTAMGLMAGL-SVSEFHKGKSFLPPPPETAMGALLNHIT 389


>gi|170740726|ref|YP_001769381.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium sp. 4-46]
 gi|205830310|sp|B0UI96|TRMFO_METS4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|168195000|gb|ACA16947.1| gid protein [Methylobacterium sp. 4-46]
          Length = 473

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE+    R G      Y++ P+ L  TL  K    L  AG
Sbjct: 291 GFQTKLRHAEQVRIFRTIPGLERAEFARLGGLHRNTYLDSPRLLDATLRLKAAPRLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           QI G  GY E+AA GL+AG  +A +           T + +G +I  +T   V
Sbjct: 351 QITGCEGYVESAAVGLMAGRYAAAERRGRALAPLPPTTA-LGALIAHITGGHV 402


>gi|15965296|ref|NP_385649.1| tRNA (uracil-5-)-methyltransferase Gid [Sinorhizobium meliloti
           1021]
 gi|307307886|ref|ZP_07587611.1| gid protein [Sinorhizobium meliloti BL225C]
 gi|26006769|sp|Q92Q15|TRMFO_RHIME RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|15074476|emb|CAC46122.1| NAD(FAD)-utilizing enzyme [Sinorhizobium meliloti 1021]
 gi|306901502|gb|EFN32105.1| gid protein [Sinorhizobium meliloti BL225C]
          Length = 472

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL+     R G      YIN P  L  +L  K   GL  AG
Sbjct: 294 GFQTKLKYGAQGEVFRMIPGLQNAEFARLGGLHRNTYINSPTLLDHSLTLKSRPGLRFAG 353

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG  +A +   +  +    T ++ G ++D +T   ++
Sbjct: 354 QITGCEGYVESASIGLLAGRFAAAERKGVSPVLPPVTTAF-GALLDHITGGHIV 406


>gi|332710062|ref|ZP_08430017.1| tRNA:m(5)U-54 methyltransferase [Lyngbya majuscula 3L]
 gi|332351205|gb|EGJ30790.1| tRNA:m(5)U-54 methyltransferase [Lyngbya majuscula 3L]
          Length = 474

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      ++N  EL  PTL+ KK S L  AG
Sbjct: 293 GFQTNLRWGEQKRVFRLIPGLEEAEFVRMGVMHRNTFLNAPELLQPTLQFKKRSTLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT  Y  AAA G +AG N+AR    L+ +    T + +G + D ++S
Sbjct: 353 QLVGTESYTAAAAGGWLAGTNAARLVLGLELVTMPPT-TMMGALFDFISS 401


>gi|186684313|ref|YP_001867509.1| tRNA (uracil-5-)-methyltransferase Gid [Nostoc punctiforme PCC
           73102]
 gi|186466765|gb|ACC82566.1| gid protein [Nostoc punctiforme PCC 73102]
          Length = 452

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   YGP     + D   R GER    + L  E     +    G  T L    Q +  + 
Sbjct: 254 DTMRYGPLKPVGLSD--TRTGERPYAVVQLRQEDKVGQLWNMVGFQTNLRWGEQKRIFQL 311

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IP LEK   +R G      +IN P+ + PTL+ K+   L  AGQ+ GT GY  AAA G +
Sbjct: 312 IPSLEKAEFVRLGVMHRNTFINAPQLMHPTLQFKECPTLLAAGQLIGTEGYTAAAAGGCL 371

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           AGIN+AR +   + +    T + +G +++ ++S
Sbjct: 372 AGINAARLALGKEALVLPPT-TMMGALLEFISS 403


>gi|108805133|ref|YP_645070.1| tRNA (uracil-5-)-methyltransferase Gid [Rubrobacter xylanophilus
           DSM 9941]
 gi|123068948|sp|Q1ATM0|TRMFO_RUBXD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|108766376|gb|ABG05258.1| gid protein [Rubrobacter xylanophilus DSM 9941]
          Length = 447

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG------ 362
           G  T L    Q +  R IPGL++    R G      Y+    +     T KI        
Sbjct: 276 GFQTRLRWGEQKRVFRMIPGLQRAEFARFGVMHRNTYLPSNRMLEA--TMKIRNALSERP 333

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK-GVL 421
           LF AGQ+ G  GY E+ A G +AG N+AR +  L+ I +    + +G +   +T+K G L
Sbjct: 334 LFFAGQLTGVEGYVESTAMGYIAGTNAARVARGLEPIRWPE-GTMMGALARYITTKEGTL 392

Query: 422 EP 423
           +P
Sbjct: 393 QP 394



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 25/153 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           DV V+GGG AG EAA  AA+ G    L           H T     + C+ ++G      
Sbjct: 3   DVTVVGGGLAGSEAAWQAARAGCRVELWEMRPVKETPAHHTDLFAELVCSNSLGNRSPET 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++ R ADA  +          PA  G      RE +  A+   + S
Sbjct: 63  ASGLLKEELRRLGSVILRCADANAV----------PA--GGALGVAREDFARAVTETVGS 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
             N++V++ E         +I++  +  +++ R
Sbjct: 111 HPNIEVVRREARDIPEGPAVIATGPLTSDALHR 143


>gi|83593092|ref|YP_426844.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodospirillum rubrum ATCC
           11170]
 gi|123526577|sp|Q2RTI8|TRMFO_RHORT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|83576006|gb|ABC22557.1| Gid protein [Rhodospirillum rubrum ATCC 11170]
          Length = 482

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N P+ L PTL  K    L  AG
Sbjct: 286 GFQTKLKHGEQARIFRMIPGLENAEFARLGGIHRNTFLNSPRLLDPTLRLKARPHLRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGCEGYVESAAIGLLAG 364


>gi|307292642|ref|ZP_07572488.1| gid protein [Sphingobium chlorophenolicum L-1]
 gi|306880708|gb|EFN11924.1| gid protein [Sphingobium chlorophenolicum L-1]
          Length = 445

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +I +PK L  TL  K    +  AG
Sbjct: 287 GFQTKLKHGAQTELFRTIPGLEKAEFARLGGLHRNTFIQSPKLLDATLRLKSAPHIRFAG 346

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+ A GL+AG
Sbjct: 347 QVTGCEGYVESGAIGLLAG 365


>gi|83319831|ref|YP_424581.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|123535603|sp|Q2SRN2|TMFO2_MYCCT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|83283717|gb|ABC01649.1| glucose-inhibited division protein, putative [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 423

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
              T L    Q +    IPGLE + I++ G   + +YIN K+L    ++ K    +F AG
Sbjct: 267 NFQTNLMWNEQLKVFSLIPGLENLKIMKYGVMHKNNYINTKKLLNLGVQLKTNKNIFFAG 326

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY E+   GL++ IN  R  N
Sbjct: 327 QIIGVDGYVESVCSGLISAINLDRYLN 353


>gi|302383721|ref|YP_003819544.1| gid protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302194349|gb|ADL01921.1| gid protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 465

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL+     R G      Y+N P+ L   L  K +  L  AG
Sbjct: 296 GFQTKLKHGAQAEVFRMIPGLQNAQFARLGGLHRNTYLNSPQLLDRQLRMKAMPRLRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAGINSA--RKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A  R    LD        + IG +++ +T
Sbjct: 356 QVTGVEGYVESAATGLLAGRLAAAERLGKPLDAPA---AHTAIGALVEHIT 403


>gi|120601959|ref|YP_966359.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris DP4]
 gi|205830332|sp|A1VBW6|TRMFO_DESVV RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|120562188|gb|ABM27932.1| gid protein [Desulfovibrio vulgaris DP4]
          Length = 482

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    I L  E  N       G  T L    Q +  R IPGL     +R G     
Sbjct: 262 RTGTRPYAIIQLRAENRNKTAFNIVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRN 321

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P+ L   L  +    +FLAGQI G  GY E+AA G+  G+  A +    + +   
Sbjct: 322 TYVNAPRVLADDLSLRADKRVFLAGQITGVEGYVESAACGMWLGMVLAARIQGRE-LPTP 380

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKL------GC 455
              + +G ++  L +     P + F          +P NA+  L P +G+K+        
Sbjct: 381 PPQTALGALLMHLRT-----PVKNF----------QPSNANFGLMPELGLKVKKRERKPL 425

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
              R ++ F +++ E   +  +++ L+ T+ + +  + +    G T  A E
Sbjct: 426 YSARAREHFVRWLAEAG-VTPVIEPLLPTAPDAADATGAIDTTGATGAARE 475


>gi|325294324|ref|YP_004280838.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064772|gb|ADY72779.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 436

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N     L   G  T + YP           Q +  R IPGLE     R G   
Sbjct: 262 VVQLRKENKEGTLLNLVGFQTKLKYPE----------QKRVFRLIPGLENAEFARFGSIH 311

Query: 342 EYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +I +PK L  TL+ KK   +F AGQI G  GY E+AA G++AGIN+ + +   + + 
Sbjct: 312 RNTFIKSPKLLLKTLQLKKNPKVFFAGQITGVEGYPESAATGIIAGINAVKLAEGKELV- 370

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPD 440
           +    + IG ++  +T+    +P       A + I L P+
Sbjct: 371 YPPETTMIGALLKYITTA---DPKTFQPMNANFGILLPPE 407



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 25/128 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIG G AG EAA   A  G    L           HKTS    + C+  +GG      +G
Sbjct: 7   VIGAGLAGVEAAYKVANKGHKVRLFEMRPKKTTPAHKTSLFAELVCSNTLGGKEVTTPRG 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E++ L+ L   + +AA    R   V  G A+       DRE +   +  +I +  N
Sbjct: 67  LLKAEMELLNSL---IVEAA----RKTEVPAGGAL-----AVDREKFAEYITEKIENHPN 114

Query: 117 LDVIQGEV 124
           ++V++ EV
Sbjct: 115 IEVVREEV 122


>gi|114797503|ref|YP_761447.1| tRNA (uracil-5-)-methyltransferase Gid [Hyphomonas neptunium ATCC
           15444]
 gi|123027764|sp|Q0BYJ6|TRMFO_HYPNA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114737677|gb|ABI75802.1| gid protein [Hyphomonas neptunium ATCC 15444]
          Length = 467

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLEK    R G      ++N PK L   L  K +  L  AG
Sbjct: 290 GFQTKLKYAAQTDIFRMIPGLEKAEFARLGGIHRNTFLNSPKLLDRQLRMKSMPRLRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 350 QVTGVEGYVESAAMGLLAG 368


>gi|325677874|ref|ZP_08157516.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus albus 8]
 gi|324110428|gb|EGC04602.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus albus 8]
          Length = 442

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   +GP     + D   R G+R    + L  E     +    G  T L    Q +    
Sbjct: 242 DTLRFGPLKPVGLTDP--RTGKRPWAVVQLRAENTAGSMYNLVGFQTNLKFGEQKRVFSM 299

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    +R G      +IN PK L      ++   L+ AGQ+ G  GY E+AA G+ 
Sbjct: 300 IPGLENAEFMRYGVMHRNTFINSPKLLNEQFNMRQRPELYFAGQMTGVEGYIESAASGIF 359

Query: 385 AGINSARKSNKLDCICFSRT 404
           AG++ AR+   L  +    T
Sbjct: 360 AGLSLARQMRGLAPVSLPAT 379


>gi|220922176|ref|YP_002497477.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium nodulans
           ORS 2060]
 gi|219946782|gb|ACL57174.1| gid protein [Methylobacterium nodulans ORS 2060]
          Length = 473

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      Y++ P+ L  TL  K    L  AG
Sbjct: 291 GFQTKLRHAEQVRIFRTIPGLEKAEFARLGGLHRNTYLDSPRLLDATLRLKADPRLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           QI G  GY E+AA GL+AG  +A
Sbjct: 351 QITGCEGYVESAAVGLMAGRYAA 373


>gi|170287998|ref|YP_001738236.1| gid protein [Thermotoga sp. RQ2]
 gi|205830347|sp|B1L7X2|TRMFO_THESQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|170175501|gb|ACB08553.1| gid protein [Thermotoga sp. RQ2]
          Length = 435

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IP L    I+R G      YIN PK L      KK   +F AG
Sbjct: 277 GFQTRLKWSEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKHPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA G+    N  R
Sbjct: 337 QITGVEGYMESAASGIYVAYNVHR 360


>gi|298292207|ref|YP_003694146.1| gid protein [Starkeya novella DSM 506]
 gi|296928718|gb|ADH89527.1| gid protein [Starkeya novella DSM 506]
          Length = 476

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q +  R IPGLEK    R G      Y+N PK L  TL  +    L  AGQI G  GY E
Sbjct: 302 QTRLFRMIPGLEKAEFARLGGLHRNTYLNSPKLLDTTLRLRAEPRLRFAGQITGCEGYVE 361

Query: 378 AAAQGLVAGINSA 390
           ++A GL+AG+ +A
Sbjct: 362 SSAMGLMAGLFAA 374


>gi|320108819|ref|YP_004184409.1| gid protein [Terriglobus saanensis SP1PR4]
 gi|319927340|gb|ADV84415.1| gid protein [Terriglobus saanensis SP1PR4]
          Length = 448

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q + +R IPGLE    +R G      YI+ P  L  TL+ K+   + +AGQ++G  GY E
Sbjct: 291 QQRILRLIPGLENATFLRYGQIHRNTYIHAPSLLTETLQLKQHPNILIAGQLSGVEGYTE 350

Query: 378 AAAQGLVAGINSA 390
           + A G++AG  +A
Sbjct: 351 SIASGMLAGRYAA 363


>gi|42524778|ref|NP_970158.1| tRNA (uracil-5-)-methyltransferase Gid [Bdellovibrio bacteriovorus
           HD100]
 gi|81616190|sp|Q6MHW5|TRMFO_BDEBA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39576988|emb|CAE78217.1| glucose-inhibited division protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 440

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 149/420 (35%), Gaps = 99/420 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           I ++  + V+G G AG E A   A +G S  L           HKT     + C+ + G 
Sbjct: 4   ITQNQKITVVGAGLAGSECALQLADMGYSVVLYEMRDKTMTPAHKTHKFAELVCSNSFGS 63

Query: 53  LGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           LG+    G L  E   L+  + + A  A +               P  QA      L M 
Sbjct: 64  LGEHSAPGQLKWEAKKLNSHILQAAFEAQV---------------PAGQA------LGMD 102

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           RE+ S      I  E    +    I + +V   N + R +  V+ TG             
Sbjct: 103 REVFS-----AIMTEKVKNHPNIEIRNDVVKSLNDIPRPA--VIATGPLTHD-------- 147

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                + +S      + F+ F FD           +D  +I    TE  +  +R      
Sbjct: 148 ----DLAESMRQHFGDEFLYF-FD------AIAPIIDADSI---NTEIAWKADRY----- 188

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP-RYCPSIE------DK 281
             DK T     C + +   E +R I E  K   I   D ++      C  IE       +
Sbjct: 189 --DKGTGDYYNCPMNKE--EYNRFIEEIQKARKIEPKDFETTDFFEGCMPIEVMVDRGPQ 244

Query: 282 IVRFGE---------RNGHQIFL-------EPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +RFG          R G   +          EG   ++V   G  T +    Q +  R 
Sbjct: 245 TLRFGPMKPIGLDDPRTGRYPWAVVQLRQDNKEGTAYNMV---GFQTRMAYGEQVRVFRM 301

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    ++ G      +IN PK L   L +K    LF AGQI G  GY E+   GL+
Sbjct: 302 IPGLENAEFLKLGSIHRNLFINSPKRLNKDLSSKNDPWLFFAGQITGVEGYFESTCTGLM 361


>gi|282856244|ref|ZP_06265527.1| tRNA:M(5)U-54 methyltransferase [Pyramidobacter piscolens W5455]
 gi|282586003|gb|EFB91288.1| tRNA:M(5)U-54 methyltransferase [Pyramidobacter piscolens W5455]
          Length = 445

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      Y++ P+ L   L  + +  LFLAG
Sbjct: 279 GFQTNLRWGEQQRVFRLIPGLERAEFVRMGVMHRNIYVDAPRCLDGCLRPRGMESLFLAG 338

Query: 368 QINGTTGYEEAAAQGLVAGIN 388
           Q+ G  GY E+ A G VA + 
Sbjct: 339 QMTGVEGYVESTAMGAVAALG 359



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 13/84 (15%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
          V++ GGG AG EAA    + G    +           H+T  +G + C+ ++G       
Sbjct: 4  VVIAGGGLAGSEAAWQLVRRGIPVHMFEMRPVVSSPAHRTDKLGELVCSNSLGSDSGDSA 63

Query: 55 KGHLVREIDALDGLMGRVADAAGI 78
           G L  E+ ALD L+ + ADA  +
Sbjct: 64 AGLLKEELRALDSLIMKSADAHSV 87


>gi|282850775|ref|ZP_06260150.1| hypothetical protein HMPREF9209_1597 [Lactobacillus gasseri 224-1]
 gi|282558183|gb|EFB63770.1| hypothetical protein HMPREF9209_1597 [Lactobacillus gasseri 224-1]
          Length = 72

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G+ PA L +L  YI++  +
Sbjct: 9   ESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISGVNPADLAILTAYIQQGRI 67


>gi|15643497|ref|NP_228543.1| tRNA (uracil-5-)-methyltransferase Gid [Thermotoga maritima MSB8]
 gi|26006779|sp|Q9WZJ3|TRMFO_THEMA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|4981259|gb|AAD35815.1|AE001744_5 glucose-inhibited division protein [Thermotoga maritima MSB8]
          Length = 435

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IP L    I+R G      YIN PK L      KK   +F AG
Sbjct: 277 GFQTRLKWSEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKHPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA G+    N  R
Sbjct: 337 QITGVEGYMESAASGIYVAYNVHR 360


>gi|313678280|ref|YP_004056020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma bovis PG45]
 gi|312950158|gb|ADR24753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma bovis PG45]
          Length = 427

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 154/404 (38%), Gaps = 77/404 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------------KG 56
           VIG G +G E      K      L   K+    ++  N     L              KG
Sbjct: 6   VIGAGISGSEVCYQLLKRNYLVELFEVKSIKKNAIQTNDLFANLAYSDSFHSNEITSAKG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E+  LD  + +VAD A +    L V             DR  ++  +   + S +N
Sbjct: 66  VLKQEMRLLDSFIIKVADYASVATEPLLV-------------DRNKFQEYITNYLKSHKN 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH--IGKLKIPAGRM 174
           L +I+ E              +  D+S+      ++ TG      +   I KL      +
Sbjct: 113 LKIIEKEY-------------IEIDDSI----PTIIATGPLSSPALEKEIKKL------V 149

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---- 230
           G+S  N  F+      F +              TI WD  +K   D++L  + F+     
Sbjct: 150 GESNFN-YFDQVQPIIFKS--------------TINWDYVQKSNNDDKLF-YCFLNKAEF 193

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI--EDKIVRFGER 288
           + + +  I   I  + L     ++ N   S+I +  I   G +   ++   D+++   + 
Sbjct: 194 EHLYSLIINAEIFISPLPNEIALVHNHGFSSIET--IAYKGKKELKNLLSTDELIESNDF 251

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
               I L+ +  N +++      T +    Q++ I++IP L   +I+R G   + DYIN 
Sbjct: 252 YA-VISLKQDEYNENLLRIVNFQTNIKIPWQNEIIKSIPALRNSSILRYGVMHKNDYINS 310

Query: 349 KELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             +       K    +F  GQ+ GT GY EA+A  ++  IN  R
Sbjct: 311 ANVLDDNFSLKSKPNIFFVGQLTGTDGYLEASASAIICAINVDR 354


>gi|291286091|ref|YP_003502907.1| HI0933 family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883251|gb|ADD66951.1| HI0933 family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 416

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 21/167 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGG AG  AA  A + GAS  L+      +GS+     I G G+ +L   I   
Sbjct: 4   YDVIVIGGGPAGMMAAGTAGENGASVLLL----EKMGSLGRKLLISGSGRCNLTNTITVT 59

Query: 66  D------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----------RLAMQR 109
                  G  GR    A   F   +       RG  T  +++             L++  
Sbjct: 60  KDFVEHFGKKGRFLYPALNGFSTTDTISFFNGRGLVTTVEKDFKIFPESETAAEVLSVLT 119

Query: 110 EILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + +  +D+ QG  +   +T  NII+S+ +  N +I C ++++TTG
Sbjct: 120 RYMKENRVDIRQGVIIKNIHTADNIITSVELAGNEVITCKSLIITTG 166


>gi|148269340|ref|YP_001243800.1| tRNA (uracil-5-)-methyltransferase Gid [Thermotoga petrophila
           RKU-1]
 gi|281411963|ref|YP_003346042.1| gid protein [Thermotoga naphthophila RKU-10]
 gi|205830346|sp|A5IJ51|TRMFO_THEP1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147734884|gb|ABQ46224.1| gid protein [Thermotoga petrophila RKU-1]
 gi|281373066|gb|ADA66628.1| gid protein [Thermotoga naphthophila RKU-10]
          Length = 435

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IP L    I+R G      YIN PK L      KK   +F AG
Sbjct: 277 GFQTRLKWNEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKQPNIFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+AA G+    N  R
Sbjct: 337 QITGVEGYMESAASGIYVAYNVYR 360


>gi|23013337|ref|ZP_00053245.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
 gi|46202424|ref|ZP_00208511.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 130

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N P+ L  +L  K    L LAG
Sbjct: 34  GFQTKLRHGEQSRIFRAIPGLENAEFARLGGLHRNTFVNGPRVLDRSLRLKAQPRLRLAG 93

Query: 368 QINGTTGYEEAAAQGLVAGINSARKS 393
           QI G  GY E++A GL+AG+ +A ++
Sbjct: 94  QITGCEGYVESSAIGLLAGLFAAAEA 119


>gi|301166609|emb|CBW26185.1| protein Gid homolog [Bacteriovorax marinus SJ]
          Length = 455

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           G  T L  + Q +  R IPG E+ + I  G      ++N K+L    L +KK   +  AG
Sbjct: 293 GFQTRLTYKEQVRVFRKIPGFEEASFIHLGSVHRNSFLNSKKLLNFDLSSKKYETIHFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           QI G  GY E+A+ GL A     RK
Sbjct: 353 QITGVEGYTESASMGLYAAWQVLRK 377



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 25/131 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----G 54
           V+VIG G AGC+AA   A  G    L+  KT          T   + C  ++  +    G
Sbjct: 8   VLVIGAGLAGCDAAMFLASRGVKVVLVECKTLFLNPAQKMKTYAELVCTNSLKSMSPDTG 67

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E++A    MG    + G+++ V      PA  G     +RE +  A+ + +   
Sbjct: 68  HGLLKYEMNA----MGSYILSKGMEYAV------PA--GDALAVNREEFSAAITKGLHEH 115

Query: 115 ENLDVIQGEVA 125
           EN+++   E A
Sbjct: 116 ENIEIFAEEAA 126


>gi|315498265|ref|YP_004087069.1| gid protein [Asticcacaulis excentricus CB 48]
 gi|315416277|gb|ADU12918.1| gid protein [Asticcacaulis excentricus CB 48]
          Length = 470

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISG---LF 364
           G  T L    Q +  R IPGL+     R G      +I +PK L   L  K++ G   L 
Sbjct: 292 GFQTKLKHGAQAEVFRMIPGLQNAQFARLGGLHRNTFIQSPKVLGADLRLKRLIGERSLR 351

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+AG+ +A ++ K   +      + +G +I  +T   +    
Sbjct: 352 FAGQITGVEGYVESAAMGLLAGLFAAAEA-KGKTLPPPPPTTALGALIGHITGGHL---- 406

Query: 425 RMFTSRAEYRISLRPDNADNRLTP 448
                 A+ + S +P N +  L P
Sbjct: 407 ------ADEKASFQPMNINYGLLP 424


>gi|307317060|ref|ZP_07596501.1| gid protein [Sinorhizobium meliloti AK83]
 gi|306897148|gb|EFN27893.1| gid protein [Sinorhizobium meliloti AK83]
          Length = 472

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL+     R G      YIN P  L  +L  K   GL  AG
Sbjct: 294 GFQTKLKYGAQGEVFRMIPGLQNAEFARLGGLHRNTYINSPTLLDHSLTLKSRPGLRFAG 353

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           QI G  GY E+A+ GL+AG  +A +      +    T ++ G ++D +T   ++
Sbjct: 354 QITGCEGYVESASIGLLAGRFAAAERKGASPVLPPVTTAF-GALLDHITGGHIV 406


>gi|86749845|ref|YP_486341.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           HaA2]
 gi|123292561|sp|Q2IWI0|TRMFO_RHOP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86572873|gb|ABD07430.1| gid protein [Rhodopseudomonas palustris HaA2]
          Length = 482

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 300 GFQTKLNYAAQQRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDAGLRLRAAPRLRFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A  GLVAG+++A
Sbjct: 360 QMTGCEGYVESAGIGLVAGLSAA 382


>gi|332186143|ref|ZP_08387889.1| tRNA:m(5)U-54 methyltransferase [Sphingomonas sp. S17]
 gi|332013958|gb|EGI56017.1| tRNA:m(5)U-54 methyltransferase [Sphingomonas sp. S17]
          Length = 464

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +I   EL   TL  K    L  AG
Sbjct: 282 GFQTKLKYAEQIRIFRTIPGLEKAEFARLGGLHRNTFIRSPELLDATLRLKSRPNLRFAG 341

Query: 368 QINGTTGYEEAAAQGLVAG-INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+AA GL+AG   +A  + K   I     ++ +G ++  +T     E Y+
Sbjct: 342 QITGCEGYIESAAIGLLAGRFAAAELTGK--TIAPPPVETALGALLGHITGLAEAETYQ 398


>gi|317131317|ref|YP_004090631.1| gid protein [Ethanoligenens harbinense YUAN-3]
 gi|315469296|gb|ADU25900.1| gid protein [Ethanoligenens harbinense YUAN-3]
          Length = 440

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL-ETKKISGLFLAG 367
           G  T L    Q +    IPGLE+   +R G      ++N   L       K    +F AG
Sbjct: 284 GFQTHLRFPEQKRVFSMIPGLERAEFVRYGVMHRNTFLNAPGLLDRFYRLKSDPRVFFAG 343

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKL 396
           Q+ G  GY E+AA GL AG+N AR++  L
Sbjct: 344 QMTGVEGYLESAASGLDAGLNCARQTMGL 372


>gi|256026612|ref|ZP_05440446.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
          Length = 448

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 293 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+ A IN A R  NK + I      S IG +++ +T +
Sbjct: 353 QITGGEGYVTAIATGMYAAINVANRLENKKEFIL--EDISEIGAIVNYITEE 402


>gi|213423029|ref|ZP_03356047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 35

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           GLM +  D AGIQF++LN  KGPAVR  R QADR
Sbjct: 1   GLMAKAIDQAGIQFKILNASKGPAVRATRAQADR 34


>gi|148255759|ref|YP_001240344.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium sp. BTAi1]
 gi|205830326|sp|A5EJU4|TRMFO_BRASB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146407932|gb|ABQ36438.1| hypothetical protein BBta_4399 [Bradyrhizobium sp. BTAi1]
          Length = 465

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q Q  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 283 GFQTKLKYGPQQQIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDAQLRLRAQPRLRFAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKS 393
           Q+ G  GY E+A+ GL+AG+ +A ++
Sbjct: 343 QMTGCEGYVESASIGLIAGLYAAAEA 368


>gi|289764613|ref|ZP_06523991.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
 gi|289716168|gb|EFD80180.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
          Length = 434

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+ A IN A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYAAINVANRLENKKEFIL--EDISEIGAIVNYITEE 388


>gi|197123193|ref|YP_002135144.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter sp. K]
 gi|226707902|sp|B4UII2|TRMFO_ANASK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|196173042|gb|ACG74015.1| gid protein [Anaeromyxobacter sp. K]
          Length = 453

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           ++ ++GP     +ED   R G R    + L  E ++       G  T L    Q +  R 
Sbjct: 240 EVLAHGPLKPVGLEDP--RTGRRPHAVVQLRREDVDGTAWNLVGFQTRLTWPEQRRIFRA 297

Query: 326 -IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            +PGL     +R G      +++ P+ L P L  +    LFLAGQI G  GY E+AA GL
Sbjct: 298 FLPGLANAEFVRLGQIHRNTFVDAPRVLAPDLSVRAAPHLFLAGQITGVEGYVESAACGL 357

Query: 384 VA 385
           +A
Sbjct: 358 LA 359


>gi|85716179|ref|ZP_01047154.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
 gi|85697012|gb|EAQ34895.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
          Length = 477

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 295 GFQTKLKHSAQTRIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDNRLRLRAEPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+AG+ +A
Sbjct: 355 QMTGCEGYVESAAIGLIAGLYAA 377


>gi|328949745|ref|YP_004367080.1| glucose-inhibited division protein A [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450069|gb|AEB10970.1| glucose-inhibited division protein A [Marinithermus hydrothermalis
           DSM 14884]
          Length = 227

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 32/186 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+++G G +G EAA   A+ GA   L+T    T+  +   P  G   +G L+ EI   
Sbjct: 3   YDVLIVGAGFSGAEAAYALARRGARVGLMTQSLDTV-YLPFTPVPGPAPEGTLLAEI--- 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                     AGI                   A  EL+R A +  + ++ NL + Q    
Sbjct: 59  --------WEAGI-------------------APWELHRKA-KYALEAERNLHLFQSSAT 90

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +   +         VL  G+FL   +++G +   AGR+ ++    L+  
Sbjct: 91  RLLVEAGRVVGVATWEGPRRLAEKTVLAVGSFLDPKLYVGMVVEAAGRLAEAAYPDLYED 150

Query: 186 FMKFDF 191
            ++  F
Sbjct: 151 LVRHGF 156


>gi|319408368|emb|CBI82021.1| gid-family protein [Bartonella schoenbuchensis R1]
          Length = 466

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      Y+N P  L  +L  K+   L  AG
Sbjct: 291 GFQTKLKYGEQIRIFRTIPGLEKAEFARLGGLHRNTYLNSPIILDKSLRLKQKPQLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E++A GL+AG  +  + N   C       +  G +++ +T
Sbjct: 351 QITGCEGYVESSAIGLLAGRFAVAEYNH-TCPSLPPKTTAFGALLNHIT 398


>gi|146340957|ref|YP_001206005.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium sp. ORS278]
 gi|205830327|sp|A4YV54|TRMFO_BRASO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146193763|emb|CAL77780.1| conserved hypothetical protein; putative glucose-inhibited division
           protein (gid) [Bradyrhizobium sp. ORS278]
          Length = 465

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q Q  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 283 GFQTKLKYGPQQQIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDQQLRLRAQPRLRFAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKS 393
           Q+ G  GY E+A+ GL+AG+ +A ++
Sbjct: 343 QMTGCEGYVESASIGLIAGLYAAAEA 368


>gi|158424513|ref|YP_001525805.1| tRNA (uracil-5-)-methyltransferase Gid [Azorhizobium caulinodans
           ORS 571]
 gi|205830307|sp|A8ID68|TRMFO_AZOC5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|158331402|dbj|BAF88887.1| gid protein [Azorhizobium caulinodans ORS 571]
          Length = 471

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  RTIPGLE     R G      Y+N P+ L  TL  K    L  AG
Sbjct: 293 GFQTKMRHGEQVRVFRTIPGLENAEFARLGGLHRNTYLNSPRLLDGTLRLKAAPRLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 353 QITGCEGYVESAAVGLMAG 371


>gi|85374098|ref|YP_458160.1| tRNA (uracil-5-)-methyltransferase Gid [Erythrobacter litoralis
           HTCC2594]
 gi|122544460|sp|Q2NAC8|TRMFO_ERYLH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|84787181|gb|ABC63363.1| putative glucose-inhibited division protein (gid) [Erythrobacter
           litoralis HTCC2594]
          Length = 455

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N P  L   L  K    +  AG
Sbjct: 295 GFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRNTFLNSPMVLDRQLRLKGAEHIRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           Q+ G  GY E+AA GL+AG+ +A++          RT + +G ++  +T     E Y+
Sbjct: 355 QVTGCEGYVESAAVGLMAGMMTAKELAGDVWQGPPRTTA-LGALLSHITGDAEAETYQ 411



 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 27/135 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAIGGLG 54
           S+DV +IGGG AG EAA   A+ G    L            H+T  +  + C+ +     
Sbjct: 2   SHDVHIIGGGLAGSEAAWQLARRGVKVRLSEMRGSGEMTHAHQTDGLAELVCSNSFRSDD 61

Query: 55  K-----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L  E+ ALD L+ R  + A +          PA  G     DR+++   +Q+
Sbjct: 62  DTKNAVGLLHYEMRALDSLVMRAGEVAQV----------PA--GSAMAVDRDVFSAEVQK 109

Query: 110 EILSQENLDVIQGEV 124
            + +  N++V++  V
Sbjct: 110 TLEAHPNIEVVRERV 124


>gi|220917982|ref|YP_002493286.1| gid protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254789163|sp|B8JES4|TRMFO_ANAD2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|219955836|gb|ACL66220.1| gid protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 453

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           ++ ++GP     +ED   R G R    + L  E ++       G  T L    Q +  R 
Sbjct: 240 EVLAHGPLKPVGLEDP--RTGRRPHAVVQLRREDVDGTAWNLVGFQTRLTWPEQRRIFRA 297

Query: 326 -IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            +PGL     +R G      +++ P+ L P L  +    LFLAGQI G  GY E+AA GL
Sbjct: 298 FLPGLANAEFVRLGQIHRNTFVDAPRVLAPDLSVRAAPHLFLAGQITGVEGYVESAACGL 357

Query: 384 VA 385
           +A
Sbjct: 358 MA 359


>gi|262197812|ref|YP_003269021.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-meth
           yltransferase(FADH(2)-oxidizing) [Haliangium ochraceum
           DSM 14365]
 gi|262081159|gb|ACY17128.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-meth
           yltransferase(FADH(2)-oxidizing) [Haliangium ochraceum
           DSM 14365]
          Length = 487

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 162/425 (38%), Gaps = 55/425 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI----GGL 53
           DV VIGGG AGCEAA   A+ G   +L+          H+T  +  + C+ ++       
Sbjct: 13  DVTVIGGGLAGCEAAWQLAERGFFVSLVEMKPHLMSPAHQTPLLCELVCSNSLRSNEPST 72

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-RLAMQREI- 111
           G G L RE+     L G +  A   + RV     G A+   R    R +  RLA+   I 
Sbjct: 73  GPGLLKRELR----LAGSMVLACADEHRV---PAGSALAVERFGFGRAVTTRLALHPRIR 125

Query: 112 LSQENLDVIQ--------GEVAGFNTEKNIISSIVMQDN-------SMIRCSTVVLTTGT 156
           L +  LD +         G + G    + I  S+   D        + I  +  +    +
Sbjct: 126 LERRALDALPEGPTILATGPLTGGKLAETI-RSLTGGDRLYFYDAIAPIVSAESISPEHS 184

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           F          K+ AG  GD  +++  +S    +       TG  A  +G  I      +
Sbjct: 185 FRASRWDKHGPKLTAGAPGDR-ADAKDDSVQSSEDGASGCSTGAEAGAEGDYINCPLDRE 243

Query: 217 QFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS--GDIKSYGPRY 274
           Q+        +F+ + +  R++    +  + E  R     +    + S   ++  +GP  
Sbjct: 244 QYE-------AFVREVLAARKV----SPRSFEEPRYFEGCLPIEVLASRGPEVLRHGPMR 292

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
              + D   R G      + L PE          G  T L    Q +  R IPGL +   
Sbjct: 293 PVGLTDP--RTGRWPYAVVQLRPENRYLSAYNLVGFQTRLAYPEQQRIFRMIPGLGEAEF 350

Query: 335 IRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           +R G      YI+ P +L P LE +    + +AG + G  GY E+ A GL+A    A + 
Sbjct: 351 LRFGSIHRNTYIDAPTQLGPELELRARPDVRVAGLLTGVEGYIESCAMGLLAAWFMAARL 410

Query: 394 NKLDC 398
               C
Sbjct: 411 RGQAC 415


>gi|254563205|ref|YP_003070300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens DM4]
 gi|254270483|emb|CAX26486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens DM4]
          Length = 490

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    L  AG
Sbjct: 305 GFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQLRFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           QI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  P
Sbjct: 365 QITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVEAP 419



 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 26/137 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           + ++GGG AG EAA   A+ G    L           H T  +  + C+ +       G 
Sbjct: 21  IHIVGGGLAGSEAAWQVAQGGRRVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 80

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+ +LD L+ R ADA         V  G A+       DRE +  A+   +  
Sbjct: 81  AVGLLHQEMRSLDSLIMRTADAH-------QVPAGGAL-----AVDREGFSRAVTAALED 128

Query: 114 QENLDVIQGEVAGFNTE 130
             N+ +++ EVAG   E
Sbjct: 129 HPNITIVREEVAGLPPE 145


>gi|210633133|ref|ZP_03297700.1| hypothetical protein COLSTE_01613 [Collinsella stercoris DSM 13279]
 gi|210159287|gb|EEA90258.1| hypothetical protein COLSTE_01613 [Collinsella stercoris DSM 13279]
          Length = 444

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           H AI  G +K  G      + D   R G+R    + L  E          G  T L    
Sbjct: 238 HDAIRFGAMKPVG------LIDP--RTGKRPWAAVQLRAENAECTAYNLVGFQTNLTFSE 289

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q +  R IPGLE+    R G      +++   +         + + LAGQI GT GY EA
Sbjct: 290 QKRVFRMIPGLERAEFFRYGVMHRNTFVDAPRVLDKTFAVPGTRIRLAGQITGTEGYTEA 349

Query: 379 AAQGLVAGINS 389
            A GL+A +N+
Sbjct: 350 IASGLLAALNT 360


>gi|154248234|ref|YP_001419192.1| gid protein [Xanthobacter autotrophicus Py2]
 gi|205830348|sp|A7INE1|TRMFO_XANP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154162319|gb|ABS69535.1| gid protein [Xanthobacter autotrophicus Py2]
          Length = 471

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y+N P+ L  TL  K    L  AG
Sbjct: 292 GFQTKLRHGEQARVFRTIPGLENAEFARLGGLHRNTYLNSPRLLDGTLRLKADPRLRFAG 351

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 352 QITGCEGYVESAAVGLMAG 370


>gi|332976747|gb|EGK13578.1| tRNA:M(5)U-54 methyltransferase [Desmospora sp. 8437]
          Length = 241

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q + +R IPGLE+  I+R G      +IN P+ L PT + ++   LF AG
Sbjct: 174 GFQTHLKWGEQKRILRMIPGLEQAEIVRYGVMHRNTFINSPRALLPTYQFRERKDLFFAG 233

Query: 368 QINGTTGY 375
           Q+ G  GY
Sbjct: 234 QMTGVEGY 241


>gi|15606096|ref|NP_213473.1| tRNA (uracil-5-)-methyltransferase Gid [Aquifex aeolicus VF5]
 gi|26006757|sp|O66913|TRMFO_AQUAE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|2983279|gb|AAC06872.1| glucose inhibited division protein A [Aquifex aeolicus VF5]
          Length = 445

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFLAG 367
           G  T L  + Q +  R IP L     +R G      +I   K L   L  KK   +F AG
Sbjct: 279 GFQTKLTYKEQKRVFRLIPCLRNAVFVRLGSMHRNTFIQSNKVLTHYLNLKKKENIFFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK-GVLEP 423
           QI G  GY  ++A G++AGIN+ R +     +  + T++ +G +++ + +K G L+P
Sbjct: 339 QITGVEGYVASSATGILAGINAGRLARGEKPLK-APTETMLGALVNYIVTKEGELQP 394



 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 25/130 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           VIVIGGG AG EAA   A  G    L           HKT  +  + C+  +GGL    G
Sbjct: 5   VIVIGGGLAGSEAAWRLANEGHRVILYEMRPKKMTPAHKTGNLAELVCSNTLGGLELTTG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L   V +AA    +V  V  G A+       DR+++   +  +I S 
Sbjct: 65  AGLLKAEMQKLGSL---VIEAA----KVARVPAGGAL-----GVDRKIFSEYITEKIESH 112

Query: 115 ENLDVIQGEV 124
            N+ +I+ EV
Sbjct: 113 PNITLIREEV 122


>gi|298530283|ref|ZP_07017685.1| gid protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509657|gb|EFI33561.1| gid protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 442

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 288 RNGHQIF----LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G Q F    L  E L        G  T L    Q +    IPGLE    +R G     
Sbjct: 259 RTGEQPFAVVQLRAENLEKTAFNLVGFQTRLKLGEQKRVFSMIPGLENAEFLRLGSMHRN 318

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            ++N P+ L   LE K   G++LAGQI+G  GY E+AA GL  G+    ++  +D     
Sbjct: 319 TFVNAPQVLTRNLELKARPGVYLAGQISGVEGYLESAACGLWLGLRLGLEARGIDPPAPP 378

Query: 403 RTDSYIGVMIDDLTS 417
           R D+ +G +++ L S
Sbjct: 379 R-DTALGALMNHLQS 392


>gi|110679839|ref|YP_682846.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter denitrificans
           OCh 114]
 gi|122972724|sp|Q166D3|TRMFO_ROSDO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|109455955|gb|ABG32160.1| glucose-inhibited division protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 450

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 146/399 (36%), Gaps = 63/399 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++GGG AG EAA  AA++G    L           H+T  +G M C+ +           
Sbjct: 7   IVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDD----- 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +A+  L   +  A G+  R+ +  + PA  G     DR+L+  ++   + +   + + 
Sbjct: 62  EQNAVGLLHWEMRAAGGLIMRMADKHRLPA--GGALAVDRDLFAQSVTDTLTAHPRITIE 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GE++        I +     +S +  +    T G  L     I  +           S 
Sbjct: 120 YGEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFFDAIAPIVY-------FDSI 172

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +  ++M+  +D G  +    A L+      DK +     E  I      DK   ++ E 
Sbjct: 173 DMSRAWMQSRYDKGETEEERTAYLNCPM---DKDQY----EAFIDALLAADKTEFKEGET 225

Query: 241 G-----------ITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                       +     ET R   M+ +  +  +  D+K Y           +V+    
Sbjct: 226 ADYFDGCLPIEVMAERGRETLRFGPMKPVGLTNPHQPDVKPYA----------VVQLRRD 275

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
           N         G  T + Y            Q    +TIPGLE  +  R G      ++N 
Sbjct: 276 NKLGTLYNIVGFQTKMKY----------GAQAAVFKTIPGLENASFARLGGIHRNTFLNA 325

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           P  L   +  +    +  AGQI G  GY E+AA GL+AG
Sbjct: 326 PTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMGLLAG 364


>gi|87199932|ref|YP_497189.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123489351|sp|Q2G718|TRMFO_NOVAD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|87135613|gb|ABD26355.1| gid protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 456

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N P  L   L  K    +  AG
Sbjct: 299 GFQTKLKHAEQVRVFRTIPGLENAEFARLGGLHRNTFLNSPTLLDRQLRLKSAPNVRFAG 358

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+ + G++AG+  A +   LD     RT + +G ++  +T     E ++
Sbjct: 359 QITGCEGYVESGSVGMLAGLMVAAQIAGLDWSPPPRT-TALGALLAHITGDAEAESFQ 415


>gi|92117349|ref|YP_577078.1| tRNA (uracil-5-)-methyltransferase Gid [Nitrobacter hamburgensis
           X14]
 gi|122417936|sp|Q1QMC9|TRMFO_NITHX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|91800243|gb|ABE62618.1| gid protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 295 GFQTKLKHGAQTRVFRTIPGLETAEFARLGGLHRNTFLNSPKLLDTQLRLRAEPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+AG+ +A
Sbjct: 355 QMTGCEGYVESAAIGLIAGLYAA 377


>gi|240140694|ref|YP_002965174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens AM1]
 gi|240010671|gb|ACS41897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens AM1]
          Length = 490

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    L  AG
Sbjct: 305 GFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQLRFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           QI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  P
Sbjct: 365 QITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVEAP 419



 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           + ++GGG AG EAA   A+ G +  L           H T  +  + C+ +       G 
Sbjct: 21  IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 80

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+ +LD L+ R ADA         V  G A+       DRE +  A+   +  
Sbjct: 81  AVGLLHQEMRSLDSLIMRTADAH-------QVPAGGAL-----AVDREGFSRAVTAALEE 128

Query: 114 QENLDVIQGEVAGFNTE 130
             N+ +++ EVAG   E
Sbjct: 129 HPNITIVREEVAGLPPE 145


>gi|67925116|ref|ZP_00518491.1| Gid protein [Crocosphaera watsonii WH 8501]
 gi|67853035|gb|EAM48419.1| Gid protein [Crocosphaera watsonii WH 8501]
          Length = 456

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L PTL+ K    +  AG
Sbjct: 293 GFQTNLKWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLNPTLQFKSRPNVLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR +  LD I    T   +G + + ++S
Sbjct: 353 QLIGTEGYTAAAAGGWLAGTNAARIALGLDPISLPST-MMMGALFEFISS 401


>gi|323140525|ref|ZP_08075452.1| tRNA:m(5)U-54 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414977|gb|EFY05769.1| tRNA:m(5)U-54 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 442

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G   +  Y+N P+ L      +     + AG
Sbjct: 281 GFQTHLKWPEQRRVFGMIPGLENAEFVRFGVMHKNTYLNSPQLLDKHFNLRNNKRFYFAG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA GL+AG+ +AR
Sbjct: 341 QMTGVEGYVESAASGLMAGLAAAR 364


>gi|218532141|ref|YP_002422957.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium
           chloromethanicum CM4]
 gi|218524444|gb|ACK85029.1| gid protein [Methylobacterium chloromethanicum CM4]
          Length = 474

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 2/116 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    L  AG
Sbjct: 289 GFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           QI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  P
Sbjct: 349 QITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPT-TALGALIGHITGGHVEAP 403



 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           + ++GGG AG EAA   A+ G +  L           H T  +  + C+ +       G 
Sbjct: 5   IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+ +LD L+ R ADA         V  G A+       DRE +  A+   +  
Sbjct: 65  AVGLLHQEMRSLDSLIMRTADAH-------QVPAGGAL-----AVDREGFSRAVTAALED 112

Query: 114 QENLDVIQGEVAGFNTE 130
             N+ +++ EVAG   E
Sbjct: 113 HPNITIVREEVAGLPPE 129


>gi|218888228|ref|YP_002437549.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759182|gb|ACL10081.1| gid protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G+R    + L  E LN       G  T L    Q +  R IPGL     +R G     
Sbjct: 261 RTGQRPYAIVQLRAENLNRTAYNLVGCQTKLKYGEQERVFRMIPGLANAEFVRHGSMHRN 320

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P  L   L  +    + LAGQI G  GY E+AA GL  G+  A ++   D +   
Sbjct: 321 TYVNAPLVLADDLALRPHRHVHLAGQITGVEGYVESAACGLWLGMLLAARALGRD-LPAP 379

Query: 403 RTDSYIGVMIDDLTS 417
             D+ +G ++  L +
Sbjct: 380 PVDTALGALLHHLRT 394


>gi|302335677|ref|YP_003800884.1| gid protein [Olsenella uli DSM 7084]
 gi|301319517|gb|ADK68004.1| gid protein [Olsenella uli DSM 7084]
          Length = 441

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E +        G  T L    Q +  R IPGLE+ +  R G     
Sbjct: 253 RTGRRPWAAVQLRAENVGRTAYNLVGFQTNLSWGEQKRVFRMIPGLEEADFFRYGVMHRN 312

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            +++ P+ L  T        + LAGQI GT GY EA A GL+A +N+
Sbjct: 313 SFVDAPRVLTDTFAIPHTQ-VRLAGQITGTEGYVEAIASGLLAALNT 358


>gi|304321786|ref|YP_003855429.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
 gi|303300688|gb|ADM10287.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
          Length = 461

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      +IN PK L   L  K   GL  AG
Sbjct: 286 GFQTKLKYGAQGDVFRLIPGLENARFARLGGIHRNTFINSPKVLTDDLSAKAQPGLRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 346 QMTGVEGYLESAAIGLLAG 364


>gi|328543826|ref|YP_004303935.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [polymorphum gilvum SL003B-26A1]
 gi|326413570|gb|ADZ70633.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Polymorphum gilvum SL003B-26A1]
          Length = 466

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N PK L  TL  K  S L  AG
Sbjct: 283 GFQTKLRYGAQAEIFRMIPGLEHAEFARLGGLHRNTFLNSPKLLDATLRLKAESRLRFAG 342

Query: 368 QINGTTGYEEAAAQGLVAGI 387
           QI G  GY E+AA G +AG+
Sbjct: 343 QITGCEGYVESAAIGCLAGL 362


>gi|86138400|ref|ZP_01056974.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
 gi|85824925|gb|EAQ45126.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
          Length = 447

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE+ +  R G      ++N P  L   +  K    L  AG
Sbjct: 286 GFQTKMKYGAQTEVLRMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLKSKPHLRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +   L+     + DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRMAAAEILGLELPQVPQ-DSAMGALIHHIT 393


>gi|163741153|ref|ZP_02148545.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
 gi|161385506|gb|EDQ09883.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
          Length = 447

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K  S +  AG
Sbjct: 286 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDNQMRLKSRSNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +   L+     + DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRMAAAEILGLELPEVPQ-DSAMGALIHHIT 393


>gi|56750247|ref|YP_170948.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus elongatus PCC
           6301]
 gi|81300124|ref|YP_400332.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus elongatus PCC
           7942]
 gi|81170608|sp|Q5N5J0|TRMFO_SYNP6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123556891|sp|Q31NM4|TRMFO_SYNE7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56685206|dbj|BAD78428.1| glucose inhibited division protein [Synechococcus elongatus PCC
           6301]
 gi|81169005|gb|ABB57345.1| gid protein [Synechococcus elongatus PCC 7942]
          Length = 466

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGL +   +R G      ++N P+ L  +L+ ++   L  AG
Sbjct: 293 GFQTNLRWGEQKRIFQMIPGLSQAEFVRFGVMHRNTFVNAPQLLDASLQFRQRPTLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ GT GY  A A G +AG N+AR
Sbjct: 353 QLIGTEGYSAAVAGGWLAGTNAAR 376


>gi|163853284|ref|YP_001641327.1| gid protein [Methylobacterium extorquens PA1]
 gi|163664889|gb|ABY32256.1| gid protein [Methylobacterium extorquens PA1]
          Length = 514

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    L  AG
Sbjct: 329 GFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQLRFAG 388

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 389 QITGCEGYVESAAVGLMAG 407



 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           + ++GGG AG EAA   A+ G +  L           H T  +  + C+ +       G 
Sbjct: 45  IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 104

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+ +LD L+ R ADA         V  G A+       DRE +  A+   +  
Sbjct: 105 AVGLLHQEMRSLDSLIMRTADAH-------QVPAGGAL-----AVDREGFSRAVTAALED 152

Query: 114 QENLDVIQGEVAGFNTE 130
             N+ +++ EVAG   E
Sbjct: 153 HPNITILREEVAGLPPE 169


>gi|316934010|ref|YP_004108992.1| gid protein [Rhodopseudomonas palustris DX-1]
 gi|315601724|gb|ADU44259.1| gid protein [Rhodopseudomonas palustris DX-1]
          Length = 478

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L  +L  +    L  AG
Sbjct: 296 GFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDESLRLRASPRLRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A+ GL AG+++A
Sbjct: 356 QMTGCEGYVESASVGLFAGLSAA 378


>gi|317486124|ref|ZP_07944969.1| m(5)U-54 methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316922609|gb|EFV43850.1| m(5)U-54 methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 445

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 140/410 (34%), Gaps = 82/410 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------------G 54
           + ++G G AGCE A   A+ G +  L   K          P +  L             G
Sbjct: 6   IALVGAGLAGCECALQLARRGFAVTLFEQKPEAYSPAHSMPQLAELVCSNSLRSDELASG 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G + +E+  L   +  VADA  +          PA  G     DREL+   +   + ++
Sbjct: 66  VGLIKQELRELGSALMAVADATRV----------PA--GKALAVDRELFAGKVTELVEAE 113

Query: 115 ENLDVIQGEVAGFNT------EKNIISSIVMQDNSMIRCSTVVLTTGT----FLRGVIHI 164
            N+ +++  +A  +       E+ +IS+  +   S+   +++    G     F   +  I
Sbjct: 114 PNITLVRKAIADLDDPALEGFERVVISAGPLASESL--SASIARAVGAEHLYFYDAIAPI 171

Query: 165 -------GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
                    +     R G+       N  M  D      +      LDG           
Sbjct: 172 VAADSIDMSIAFWGSRYGEPGEGDYLNCPMNED----EYRAFYQGLLDG----------- 216

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                        +K+ +R+ E        E H      ++  A       ++GP     
Sbjct: 217 -------------EKVASREFE-------QEKHFEGCMPVEALAARGEKTLAFGPLKPVG 256

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
             D   R G R    + L PE  N  +    G  T L    Q    R +PGLE    +R 
Sbjct: 257 FTDP--RTGRRPFALLQLRPENGNKTMFNLVGCQTKLTYPAQAVCFRKVPGLEHAEFVRF 314

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           G      Y+N P  L   L  K    + LAGQI G  GY E+ A GL  G
Sbjct: 315 GSMHRNTYVNAPVSLNEELALKSRPNVHLAGQITGVEGYVESIACGLWVG 364


>gi|205830468|sp|A9VXT4|TRMFO_METEP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 474

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    L  AG
Sbjct: 289 GFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAVGLMAG 367



 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           + ++GGG AG EAA   A+ G +  L           H T  +  + C+ +       G 
Sbjct: 5   IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+ +LD L+ R ADA         V  G A+       DRE +  A+   +  
Sbjct: 65  AVGLLHQEMRSLDSLIMRTADAH-------QVPAGGAL-----AVDREGFSRAVTAALED 112

Query: 114 QENLDVIQGEVAGFNTE 130
             N+ +++ EVAG   E
Sbjct: 113 HPNITILREEVAGLPPE 129


>gi|27379838|ref|NP_771367.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium japonicum
           USDA 110]
 gi|33301129|sp|Q89L21|TRMFO_BRAJA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27352991|dbj|BAC49992.1| glucose inhibited division protein [Bradyrhizobium japonicum USDA
           110]
          Length = 475

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      ++N PK L   L  +    L  AG
Sbjct: 293 GFQTKLKYGEQQRIFRTIPGLEKAEFARLGGLHRNTFLNSPKLLDGQLRLRAQPRLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A+ GL+AG+ +A
Sbjct: 353 QMTGCEGYVESASVGLIAGLYAA 375


>gi|229815417|ref|ZP_04445749.1| hypothetical protein COLINT_02465 [Collinsella intestinalis DSM
           13280]
 gi|229808950|gb|EEP44720.1| hypothetical protein COLINT_02465 [Collinsella intestinalis DSM
           13280]
          Length = 448

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           H AI  G +K  G      + D   R G R    + L  E          G  T L    
Sbjct: 240 HDAIRFGAMKPVG------LTDP--RTGRRPWAAVQLRSENAEGTAYNLVGFQTNLTFGE 291

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q +  R IPGLE     R G      +++   +         + + LAGQI GT GY EA
Sbjct: 292 QKRVFRMIPGLENAEFFRYGVMHRNTFVDAPRVLDGSFAVPGTRVRLAGQITGTEGYTEA 351

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            A GL A +N+    +  D +    T ++ G ++   TSK  ++
Sbjct: 352 VASGLFAALNTFADLSSTDRVSLPLTGAF-GSLVAYATSKDTVD 394


>gi|167647664|ref|YP_001685327.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter sp. K31]
 gi|205830329|sp|B0T866|TRMFO_CAUSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|167350094|gb|ABZ72829.1| gid protein [Caulobacter sp. K31]
          Length = 480

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGL+     R G      +IN P+ L  +L  K    L  AG
Sbjct: 306 GFQTKLKHGAQAEVFRMIPGLQNAQFARLGGLHRNTFINSPRLLDRSLRMKVAPRLRFAG 365

Query: 368 QINGTTGYEEAAAQGLVAGINSA--RKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A  R    LD        + +G ++D +T
Sbjct: 366 QMTGVEGYVESAATGLLAGRFAAAERLGKTLDA---PPPTTALGALVDHVT 413


>gi|144897799|emb|CAM74663.1| Gid protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 451

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N P+ L   L  K    L LAG
Sbjct: 289 GFQTKLRHGEQTRIFRTIPGLEAAEFARLGGLHRNTFVNGPRVLDQQLRLKAQPRLRLAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+ + G +AG+ ++ ++   D +    T S +G ++  +T     + Y+
Sbjct: 349 QITGCEGYVESTSIGFLAGLAASAQALGHDFVAPPPT-SALGAILTHVTGGAHADTYQ 405


>gi|237742002|ref|ZP_04572483.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 4_1_13]
 gi|229429650|gb|EEO39862.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 4_1_13]
          Length = 478

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 323 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNKDNIYFAG 382

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   IN A R  NK + I      S IG +++ +T +
Sbjct: 383 QITGGEGYVTAIATGMYVAINVANRLENKKEFIL--EDISEIGAIVNYITEE 432


>gi|222085798|ref|YP_002544328.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
 gi|221723246|gb|ACM26402.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
          Length = 483

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YIN P  L  +L  K   GL  AG
Sbjct: 293 GFQTKLKYGAQAEIFRLIPGLENAEFARLGGLHRNTYINSPTLLDRSLTLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 353 QITGCEGYVESASIGLLAG 371


>gi|326387733|ref|ZP_08209339.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207779|gb|EGD58590.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE+    R G      +IN P  L   L  ++   +  AG
Sbjct: 282 GFQTKLKHAEQVRLFRTIPGLEQAEFARLGGLHRNTFINSPVVLDRQLRLRRDDRIRFAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+AA G++AG+ +A +    D     RT + +G ++  +T     E Y+
Sbjct: 342 QITGCEGYVESAAIGMLAGLMTAAQFAGKDWTPPPRT-TALGALLAHVTGDAEAETYQ 398


>gi|239616442|ref|YP_002939764.1| gid protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505273|gb|ACR78760.1| gid protein [Kosmotoga olearia TBF 19.5.1]
          Length = 437

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 20/172 (11%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IP LE    +R G      Y+N PK L   L +K    LF  G
Sbjct: 281 GFQTRLKWGEQKRVFRIIPALEHAEFVRYGVMHRNTYLNSPKILNRDLRSKGYPNLFFCG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY EA   G    +N   +  K     +    + +G +I+ +T  G        
Sbjct: 341 QITGLEGYVEAITSGRFVALN-VMELVKTGSTFYLPEKTMLGALINHITVSG-------- 391

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                 R+ L P  A+  L P  +K     ER  K+  + I+E   L+  LK
Sbjct: 392 ------RVPLSPVYANYGLLP-PVKAKGKRERNLKKAERAIEE---LKKFLK 433


>gi|85708693|ref|ZP_01039759.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
 gi|85690227|gb|EAQ30230.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
          Length = 461

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N P+ L   L  +    +  AG
Sbjct: 300 GFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRNTFLNSPRVLDRQLRLRAAPHIRFAG 359

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GLV+G+ +A
Sbjct: 360 QVTGCEGYVESAAIGLVSGMMTA 382


>gi|302823768|ref|XP_002993533.1| hypothetical protein SELMODRAFT_431601 [Selaginella moellendorffii]
 gi|300138664|gb|EFJ05425.1| hypothetical protein SELMODRAFT_431601 [Selaginella moellendorffii]
          Length = 626

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 19/116 (16%)

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ 140
           RVLN  KGPAV   R Q D+  +   M++ + + ENL         F  E  +   +V +
Sbjct: 464 RVLNRSKGPAVWALRAQTDKREHAREMKKVVETTENL---------FIRESMVTEVLVGR 514

Query: 141 DNSMIRCST----------VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           ++ +    T          VVLTT T + G I +G+  + AG  G+S S  L  +F
Sbjct: 515 NDDVEGVGTFFGVSFFAPAVVLTTRTLMNGKIWVGRKSMSAGGAGESASQGLTENF 570



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 22/27 (81%)

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSAR 391
             GQI GTTGYEEAAAQG VAG+NS R
Sbjct: 570 FCGQIIGTTGYEEAAAQGFVAGVNSTR 596


>gi|260494671|ref|ZP_05814801.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197833|gb|EEW95350.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 434

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   IN A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAINVANRLENKKEFIL--EDISEIGAIVNYITEE 388


>gi|256845342|ref|ZP_05550800.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256718901|gb|EEU32456.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 434

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNKDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   IN A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAINVANRLENKKEFIL--EDISEIGAIVNYITEE 388


>gi|254505219|ref|ZP_05117370.1| tRNA:m(5)U-54 methyltransferase [Labrenzia alexandrii DFL-11]
 gi|222441290|gb|EEE47969.1| tRNA:m(5)U-54 methyltransferase [Labrenzia alexandrii DFL-11]
          Length = 472

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      ++N PK L  TL  K    L  AG
Sbjct: 288 GFQTKLKYGAQGDIFKMIPGLENAQFARLGGLHRNTFLNSPKVLDDTLRLKADPRLRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+A+ G +AG+ +  ++   D I   +T + +G ++  +T
Sbjct: 348 QITGCEGYVESASVGCMAGLFAVMEAKGQDIITPPQT-TAMGALLGHIT 395


>gi|295100360|emb|CBK97905.1| tRNA:m(5)U-54 methyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 458

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A    D   +GP     + D   R G R    + L  E     +    G  T L    Q 
Sbjct: 253 AARGADTMRFGPLRPVGLIDP--RTGHRPWANVQLRAENKERTLYNIVGFQTNLKWGEQK 310

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +    IPGL     +R G      +++ P+ L   L  K+   +F AGQI G  GY E+ 
Sbjct: 311 RVFSMIPGLGNAEFVRYGVMHRNTFLDAPRVLSAGLCLKEHPNVFFAGQITGFEGYMEST 370

Query: 380 AQGLVAGIN-SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A GL+A  N  AR   K   +     D+  G +I  LT++      + F         L 
Sbjct: 371 ACGLLAARNIYARLEGKE--LPAPPIDTMCGALIQYLTTEN-----KHFQPMGANMGILP 423

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           P   D R     ++   + ER    F +++ E NF
Sbjct: 424 PLPEDQRPRDKRLRYMAVAERAVASFQQWLDENNF 458


>gi|322434482|ref|YP_004216694.1| gid protein [Acidobacterium sp. MP5ACTX9]
 gi|321162209|gb|ADW67914.1| gid protein [Acidobacterium sp. MP5ACTX9]
          Length = 446

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E L  D     G    L    Q + +R IPGLE    +R G      YI+ P  L
Sbjct: 264 VQLRQENLRADSYNLVGFQNHLKFGEQARVLRLIPGLEHATFLRYGQIHRNTYIHAPSLL 323

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
             TL+ +    + +AGQ++G  GY E+ A G++AG
Sbjct: 324 TETLQLRARPDILIAGQLSGVEGYTESIASGMLAG 358


>gi|291544311|emb|CBL17420.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus sp. 18P13]
          Length = 442

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      ++N P+ L  T   +    L+ AG
Sbjct: 276 GFQTNLKFGEQKRVFSMIPGLAHAEFMRYGVMHRNSFLNSPRLLTDTYCMRTNPDLYFAG 335

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           QI G  GY E+A  GLVAG+N  R
Sbjct: 336 QITGVEGYMESAGSGLVAGLNMVR 359


>gi|115524909|ref|YP_781820.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisA53]
 gi|122295920|sp|Q07MJ4|TRMFO_RHOP5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|115518856|gb|ABJ06840.1| gid protein [Rhodopseudomonas palustris BisA53]
          Length = 476

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE  +  R G      ++N PK L   L  +    L  AG
Sbjct: 294 GFQTKLKHGEQARIFRTIPGLENADFARLGGLHRNTFLNSPKLLDSQLRLRAEPRLRFAG 353

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A  GL+AG+ +A
Sbjct: 354 QMTGCEGYVESAGIGLIAGLCAA 376


>gi|254303088|ref|ZP_04970446.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323280|gb|EDK88530.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 434

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   IN A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAINVANRLENKKEFIL--EDISEIGAIVNYITEE 388


>gi|149184578|ref|ZP_01862896.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
 gi|148831898|gb|EDL50331.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      +IN P  L   L  +    +  AG
Sbjct: 299 GFQTKLKYGAQIELFRTIPGLENAEFARLGGLHRNTFINSPLVLDRQLRLRGGEHIRFAG 358

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E++A GL+AG+ +A +    D     RT ++ G ++  +T
Sbjct: 359 QITGCEGYVESSAVGLMAGMMAASELAGHDWSPPPRTTAF-GALLSHIT 406


>gi|103486647|ref|YP_616208.1| tRNA (uracil-5-)-methyltransferase Gid [Sphingopyxis alaskensis
           RB2256]
 gi|123379926|sp|Q1GTZ7|TRMFO_SPHAL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|98976724|gb|ABF52875.1| gid protein [Sphingopyxis alaskensis RB2256]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLEK    R G      +I   EL    L  K    +  AG
Sbjct: 288 GFQTKLKHAEQVRLFRTIPGLEKAEFARLGGLHRNSFIRSPELLDRQLRLKSAPHIRFAG 347

Query: 368 QINGTTGYEEAAAQGLVA 385
           QI G  GY E+AA GLVA
Sbjct: 348 QITGCEGYVESAAIGLVA 365


>gi|257469329|ref|ZP_05633423.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
          Length = 448

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE  + IR G      +I+   L   TL+ K    ++ AG
Sbjct: 291 GFQTNLKWGEQKRVFSMIPGLENADFIRYGVMHRNTFIDSSRLLDETLKLKTKDNIYFAG 350

Query: 368 QINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G+ GY  + + G +A IN A K   K   I   R  S IG MI  +T +
Sbjct: 351 QITGSEGYVSSISTGAMAAINIAHKLLGKAPFILDDR--SAIGAMIKYVTEE 400



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
          +VI++G G AGCEAA   AK G    L           HK      + C+ ++GG     
Sbjct: 16 EVIIVGAGLAGCEAAYQLAKRGIKVKLYEMKSKKMTEAHKNKYFAELVCSNSLGGDNLAN 75

Query: 54 GKGHLVREIDALDGLMGRVAD 74
            G +  E+  LD L+ ++AD
Sbjct: 76 ASGLMKEELRKLDSLLIKIAD 96


>gi|258645673|ref|ZP_05733142.1| tRNA:M(5)U-54 methyltransferase [Dialister invisus DSM 15470]
 gi|260403040|gb|EEW96587.1| tRNA:M(5)U-54 methyltransferase [Dialister invisus DSM 15470]
          Length = 432

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGL     +R G      YI+ P  L  T+ET+   GLF AG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLAGAEFVRYGVMHRNTYIHSPDLLEATMETRARKGLFFAG 337

Query: 368 QINGTTGYEEAAAQGL 383
           Q+ G  GY E+AA G+
Sbjct: 338 QMTGVEGYVESAASGI 353


>gi|307154985|ref|YP_003890369.1| gid protein [Cyanothece sp. PCC 7822]
 gi|306985213|gb|ADN17094.1| gid protein [Cyanothece sp. PCC 7822]
          Length = 446

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L P+L+ K    L  AG
Sbjct: 282 GFQTNLKWGEQKRVFRLIPGLEAAEFVRMGVMHRNTFINSPQLLGPSLQFKNRPTLLAAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR    L+ +    T + +G + D ++S
Sbjct: 342 QLVGTEGYTAAAAGGWLAGTNAARLVLGLEPVTMPVT-TMMGALFDFISS 390


>gi|317970344|ref|ZP_07971734.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CB0205]
          Length = 367

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I  + PR+   + D+ VR  +R    + L  E  +  +    G  T L    Q + +R I
Sbjct: 255 IGLWDPRWG-DVNDRDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMI 313

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           PGLE    +R G      ++  P+ L PTL+ +    L  AGQI GT GY  A
Sbjct: 314 PGLENAEFVRFGVMHRNTFLEAPQLLDPTLQFRSRPTLLAAGQITGTEGYAAA 366


>gi|317063576|ref|ZP_07928061.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
 gi|313689252|gb|EFS26087.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
          Length = 437

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE  + IR G      +I+   L   TL+ K    ++ AG
Sbjct: 280 GFQTNLKWGEQKRVFSMIPGLENADFIRYGVMHRNTFIDSSRLLDETLKLKTKDNIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G+ GY  + + G +A IN A K   K   I   R  S IG MI  +T +
Sbjct: 340 QITGSEGYVSSISTGAMAAINIAHKLLGKAPFILDDR--SAIGAMIKYVTEE 389



 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
          +VI++G G AGCEAA   AK G    L           HK      + C+ ++GG     
Sbjct: 5  EVIIVGAGLAGCEAAYQLAKRGIKVKLYEMKSKKMTEAHKNKYFAELVCSNSLGGDNLAN 64

Query: 54 GKGHLVREIDALDGLMGRVAD 74
            G +  E+  LD L+ ++AD
Sbjct: 65 ASGLMKEELRKLDSLLIKIAD 85


>gi|218245673|ref|YP_002371044.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 8801]
 gi|257058720|ref|YP_003136608.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 8802]
 gi|218166151|gb|ACK64888.1| gid protein [Cyanothece sp. PCC 8801]
 gi|256588886|gb|ACU99772.1| gid protein [Cyanothece sp. PCC 8802]
          Length = 459

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L  TL+ K    L  AG
Sbjct: 294 GFQTNLKWGEQKRIFRLIPGLETAEFVRMGVMHRNTFINSPQLLEATLQFKSRPTLLAAG 353

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR + +LD +    T + +G + + ++S
Sbjct: 354 QLIGTEGYSAAAAGGWLAGTNAARLALRLDPLKMPET-TMMGALFEFISS 402


>gi|227821950|ref|YP_002825920.1| protein Gid-like protein [Sinorhizobium fredii NGR234]
 gi|227340949|gb|ACP25167.1| protein Gid-like protein [Sinorhizobium fredii NGR234]
          Length = 587

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      YIN P  L  +L  K   GL  AG
Sbjct: 408 GFQTKLKYGAQTDVFRMIPGLENAEFARLGGLHRNTYINSPILLDGSLTLKSRPGLRFAG 467

Query: 368 QINGTTGYEEAAAQGLVAGINSA--RKSNK 395
           QI G  GY E+A+ GL+AG  +A  RK  K
Sbjct: 468 QITGCEGYVESASIGLLAGRFAAAERKGEK 497


>gi|188583546|ref|YP_001926991.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium populi
           BJ001]
 gi|205830308|sp|B1ZES7|TRMFO_METPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|179347044|gb|ACB82456.1| gid protein [Methylobacterium populi BJ001]
          Length = 474

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  +    L  AG
Sbjct: 289 GFQTKLRHAEQVRIFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLRARPQLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAVGLMAG 367


>gi|197105412|ref|YP_002130789.1| glucose inhibited division protein [Phenylobacterium zucineum HLK1]
 gi|226707907|sp|B4RDH0|TRMFO_PHEZH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|196478832|gb|ACG78360.1| glucose inhibited division protein [Phenylobacterium zucineum HLK1]
          Length = 466

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK    R G      +IN P+ L   L  K    L  AG
Sbjct: 289 GFQTKLKHGAQTEVFRMIPGLEKAVFARLGGLHRNTFINSPRLLDGVLRLKAQPRLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 349 QVTGVEGYVESAAVGLLAG 367


>gi|66576082|gb|AAY51648.1| mitochondrial MTO1 [Pan troglodytes]
 gi|66576084|gb|AAY51649.1| mitochondrial MTO1 [Pongo pygmaeus]
          Length = 76

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|206895790|ref|YP_002247058.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Coprothermobacter proteolyticus DSM 5265]
 gi|254789170|sp|B5Y8G1|TRMFO_COPPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|206738407|gb|ACI17485.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 432

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 25/131 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           DV VIGGG AG EAA   A LG    L           HKTS +  + C+ ++G L    
Sbjct: 2   DVWVIGGGLAGSEAALTLADLGFPVTLFEMRPAVMTPAHKTSKLAELVCSNSLGSLSTDN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            KG L+ E+  L   +  +A  A I        K   V       DREL+   ++  + S
Sbjct: 62  AKGELLFELKVLGSSLVNLAFEAQI-----GGDKALVV-------DRELFSTLVEDAVRS 109

Query: 114 QENLDVIQGEV 124
             N+ V++ E+
Sbjct: 110 HRNITVVRAEI 120



 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           G  T +    Q    + +P  +    +R G  I  +   P  +    +++     F AGQ
Sbjct: 277 GFQTGISHTEQISIFKQLPAFKNAVFVRLG-QIHQNRFLPGVVNKFFQSRTNRLWFYAGQ 335

Query: 369 INGTTGYEEAAAQGLVAGINSAR 391
             GT GY EA A GL AGIN AR
Sbjct: 336 FTGTEGYLEAIAGGLWAGINVAR 358


>gi|288958303|ref|YP_003448644.1| glucose inhibited division protein Gid [Azospirillum sp. B510]
 gi|288910611|dbj|BAI72100.1| glucose inhibited division protein Gid [Azospirillum sp. B510]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N P+ L   L  K +  L  AG
Sbjct: 292 GFQTKLRHAEQARIFRMIPGLENAEFARLGGMHRNTFLNSPRILDGALRLKSLPRLRFAG 351

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 352 QVTGCEGYVESAAVGLLAG 370


>gi|66576096|gb|AAY51655.1| mitochondrial MTO1 [Theropithecus gelada]
          Length = 76

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGVISPHHNLSLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|207108622|ref|ZP_03242784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 61

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI--KKNT 617
           IPK F +  +P LS E  EKL   +P +L +AS+I G+TPA L++L +YI  +KN+
Sbjct: 6   IPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS 61


>gi|66576086|gb|AAY51650.1| mitochondrial MTO1 [Hylobates lar]
          Length = 76

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISSHHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|220909352|ref|YP_002484663.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 7425]
 gi|219865963|gb|ACL46302.1| gid protein [Cyanothece sp. PCC 7425]
          Length = 463

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE    +R G      ++N P+ LFPTL+ K+   L  AG
Sbjct: 292 GFQTNLRWGEQKRVFQMIPGLEAAEFVRLGVMHRNTFLNAPELLFPTLQFKQRPTLLAAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ GT GY  AAA G +AG N+AR
Sbjct: 352 QLIGTEGYTAAAAGGWLAGTNAAR 375


>gi|66576042|gb|AAY51628.1| mitochondrial MTO1-3 [Homo sapiens]
          Length = 76

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAYHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|313679201|ref|YP_004056940.1| glucose-inhibited division protein a [Oceanithermus profundus DSM
           14977]
 gi|313151916|gb|ADR35767.1| glucose-inhibited division protein A [Oceanithermus profundus DSM
           14977]
          Length = 231

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 34/186 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G G +G EAA   A+ G +  L+T    ++      P            E  A 
Sbjct: 4   YDVLVVGAGPSGSEAAWALARRGFAVGLVTDSLDSVYRPEVPP------------EGAAP 51

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +  +A+AA      L+ +   A+ G                     ENL ++Q  V 
Sbjct: 52  AGSL--LAEAASGDLWTLHRRAKYALEG--------------------LENLHLLQSSVV 89

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +   +   +R   VVL  G+FL   +  G L+  AGR+G++    L+  
Sbjct: 90  ALLLEEGRAAGVRTWEGFDLRAGAVVLAVGSFLGARLSAGALEEAAGRLGEAAYPDLYEH 149

Query: 186 FMKFDF 191
                F
Sbjct: 150 LQGLGF 155


>gi|303232720|ref|ZP_07319405.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302481206|gb|EFL44281.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 446

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           G  T L    Q +  R IPGLE     R G      +I+   +         S L  AGQ
Sbjct: 283 GFQTNLTWPEQKRVFRLIPGLEHAEFFRYGVMHRNSFIDSPHVLNATFALPDSTLRFAGQ 342

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           I GT GY EA A GL A +N   +     C     T ++ G ++   TS
Sbjct: 343 ITGTEGYVEAIASGLYAALNCYAELIDKPCALLPATSAF-GSLVQYATS 390


>gi|222148957|ref|YP_002549914.1| tRNA (uracil-5-)-methyltransferase Gid [Agrobacterium vitis S4]
 gi|221735943|gb|ACM36906.1| glucose inhibited division protein A [Agrobacterium vitis S4]
          Length = 485

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      YI+ P  L  +L  K   GL  AG
Sbjct: 293 GFQTKLRYGAQAEIFRMIPGLENAEFARLGGLHRNTYIHSPVLLDQSLSLKSRPGLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL---EPY 424
           QI G  GY E+A+ GL+AG   A    K +        + +G +++ +T   ++   EP 
Sbjct: 353 QITGCEGYVESASIGLLAG-RFAAAERKGEAFSPPPVTTALGALLNHITGGHIVSNDEPG 411

Query: 425 RMFTSRAEYRISLRPD 440
           +           L PD
Sbjct: 412 KKSFQPMNINFGLFPD 427


>gi|90419396|ref|ZP_01227306.1| gid protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336333|gb|EAS50074.1| gid protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 473

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   +R IPGLE     R G      Y+N P  L PTL  K    +  AG
Sbjct: 289 GFQTKLKYGAQAAVLRMIPGLENAEFARLGGLHRNTYLNSPTLLDPTLRLKVRPHIRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+ G
Sbjct: 349 QITGCEGYVESAAVGLMTG 367


>gi|90424269|ref|YP_532639.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisB18]
 gi|122476120|sp|Q213W6|TRMFO_RHOPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|90106283|gb|ABD88320.1| gid protein [Rhodopseudomonas palustris BisB18]
          Length = 476

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R+IPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 293 GFQTKLKHGEQSRIFRSIPGLENAEFARLGGLHRNTFLNSPKLLDQQLRLRAEPRLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+A+ GL+AG+ +A ++  +  +    + + +G ++  +T
Sbjct: 353 QMTGCEGYVESASIGLIAGLYAAAEARDI-ALAPPPSTTALGALLGHIT 400


>gi|126657809|ref|ZP_01728963.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
 gi|126621026|gb|EAZ91741.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
          Length = 460

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN P+ L PTL+ K    L  AG
Sbjct: 293 GFQTNLRWGEQKRVFRFIPGLENAEFVRMGVMHRNTFINSPQLLDPTLQFKSRPTLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR +  L+ I    T   +G + + ++S
Sbjct: 353 QLIGTEGYTAAAAGGWLAGTNAARIALGLEPITLPST-MMMGALFEFISS 401


>gi|329889957|ref|ZP_08268300.1| tRNA:m5U-54 methyltransferase [Brevundimonas diminuta ATCC 11568]
 gi|328845258|gb|EGF94822.1| tRNA:m5U-54 methyltransferase [Brevundimonas diminuta ATCC 11568]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      ++N PK L   +  K +  L  AG
Sbjct: 298 GFQTKLKYGAQTDVFRMIPGLENAQFARLGGLHRNTFLNSPKLLDKQMRLKALPRLRFAG 357

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           Q+ G  GY E+AA GL+ G  +A ++   D +     ++ +G +++ +T  G LE
Sbjct: 358 QVTGVEGYVESAAMGLLTGRLAAAQALGRD-LTPPPPETAMGALVEHITG-GHLE 410


>gi|296328242|ref|ZP_06870772.1| (FADH(2)-oxidizing) [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154642|gb|EFG95429.1| (FADH(2)-oxidizing) [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 434

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   +N A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAMNVANRLENKKEFIL--EDISEIGAIVNYITEE 388


>gi|325293053|ref|YP_004278917.1| tRNA uracil-5-methyltransferase Gid [Agrobacterium sp. H13-3]
 gi|325060906|gb|ADY64597.1| tRNA uracil-5-methyltransferase Gid [Agrobacterium sp. H13-3]
          Length = 485

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGL+     R G      YI+ P  L P+L+ K    L  AG
Sbjct: 296 GFQTKLKYGAQADVFRMIPGLQNAEFARLGGLHRNTYIDSPVLLDPSLKLKSRPDLRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 356 QITGCEGYVESASVGLLAG 374


>gi|170747991|ref|YP_001754251.1| gid protein [Methylobacterium radiotolerans JCM 2831]
 gi|205830309|sp|B1M5H7|TRMFO_METRJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|170654513|gb|ACB23568.1| gid protein [Methylobacterium radiotolerans JCM 2831]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+    R G      Y++ P+ L  TL  +    L  AG
Sbjct: 288 GFQTKLTYSEQVRIFRMIPGLERAEFARLGGLHRNTYLDSPRLLDATLRLRARPSLRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 348 QITGCEGYVESAAVGLMAG 366


>gi|118589134|ref|ZP_01546541.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
 gi|118438463|gb|EAV45097.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
          Length = 472

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      ++N PK L  TL  K    L  AG
Sbjct: 288 GFQTKLKYGAQADIFRMIPGLENAQFARLGGLHRNTFLNSPKVLDGTLRLKADPRLRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+A+ G +AG+ +  ++   D +    T + +G ++  +T
Sbjct: 348 QITGCEGYVESASVGCLAGLFAVLEARGQDIVPPPAT-TAMGALLGHIT 395


>gi|291286770|ref|YP_003503586.1| gid protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883930|gb|ADD67630.1| gid protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 431

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE    +R G      YI+ P  L  T +T     L+ AG
Sbjct: 278 GCQTKMKIPEQKRVFRLIPGLENAEFLRFGSIHRNTYIHSPGNLKRTFQTTADKDLYFAG 337

Query: 368 QINGTTGYEEAAAQGLVA 385
           QI G  GY E+AA G++A
Sbjct: 338 QITGVEGYLESAASGILA 355


>gi|237744890|ref|ZP_04575371.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 7_1]
 gi|229432119|gb|EEO42331.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 7_1]
          Length = 434

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L   TL  K    ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNRDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   +N A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAMNVANRLENKEEFIL--EDISEIGAIVNYITEE 388


>gi|239904852|ref|YP_002951590.1| Gid protein [Desulfovibrio magneticus RS-1]
 gi|239794715|dbj|BAH73704.1| Gid protein [Desulfovibrio magneticus RS-1]
          Length = 437

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 18/181 (9%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           ++GP     + D   R G      + L PE +    +   G  T L    Q +  R IP 
Sbjct: 244 TFGPMKPVGLTDP--RTGRWPYAVVQLRPENVARSTMNLVGFQTKLVYGEQERVFRMIPA 301

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           L      R G      ++N PK L   LE     G++LAGQI G  GY E+AA GL  G 
Sbjct: 302 LHAAEFTRLGSIHRNTFVNAPKVLNERLELVARPGVYLAGQITGVEGYVESAACGLWLGT 361

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
               +  + + +      + +G +++ L +     P + F          +P N +  LT
Sbjct: 362 QLGARLARGEELPPPPVVTALGALLNHLRT-----PAKKF----------QPSNVNFGLT 406

Query: 448 P 448
           P
Sbjct: 407 P 407


>gi|254293779|ref|YP_003059802.1| tRNA (uracil-5-)-methyltransferase Gid [Hirschia baltica ATCC
           49814]
 gi|254042310|gb|ACT59105.1| gid protein [Hirschia baltica ATCC 49814]
          Length = 473

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q   +R IPGLE     R G      +IN PK L   L+ K    +  AG
Sbjct: 301 GFQTKMTYGAQKDVLRMIPGLENAEFARLGGIHRNTFINSPKVLNNKLQLKNQLRIRFAG 360

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q++G  GY E+AA GL+AG
Sbjct: 361 QVSGVEGYVESAAMGLLAG 379


>gi|302341709|ref|YP_003806238.1| gid protein [Desulfarculus baarsii DSM 2075]
 gi|301638322|gb|ADK83644.1| gid protein [Desulfarculus baarsii DSM 2075]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L  + Q +  R IP L      R G      +++ P+ L   +  +    +F+AG
Sbjct: 296 GFQTKLTHQSQLRVFRLIPALAHAEFARLGSIHRNSFVDAPRVLDAFMRLRTAPNVFVAG 355

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+ A GL+ G+N+AR
Sbjct: 356 QLAGVEGYVESMAAGLLCGLNAAR 379


>gi|153005551|ref|YP_001379876.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter sp.
           Fw109-5]
 gi|205830306|sp|A7HDU6|TRMFO_ANADF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|152029124|gb|ABS26892.1| gid protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D+ +YGP     +ED   R G R    + L  E +        G  T L    Q + +R 
Sbjct: 240 DVLAYGPMKPVGLEDP--RTGRRPFAVVQLRREDVAGTAYNLVGFQTRLTWTEQRRILRE 297

Query: 326 -IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            +PGL     +R G      ++  P+ L P L  ++   LF AGQI G  GY E+AA G 
Sbjct: 298 YVPGLAGAEFVRLGQIHRNTFLEAPRVLAPDLSARERPHLFFAGQITGVEGYVESAACGH 357

Query: 384 VA 385
           +A
Sbjct: 358 LA 359


>gi|163736318|ref|ZP_02143737.1| gid protein [Phaeobacter gallaeciensis BS107]
 gi|161390188|gb|EDQ14538.1| gid protein [Phaeobacter gallaeciensis BS107]
          Length = 447

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDNQMRLKSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRMAAAEILGRDLPEVPQ-DSAMGALIHHIT 393


>gi|34763135|ref|ZP_00144104.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887198|gb|EAA24300.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 140

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE    IR G      +IN  +L   TL  K    ++ AGQI G  GY  A A G+ 
Sbjct: 2   IPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNKDNIYFAGQITGGEGYVTAIATGMY 61

Query: 385 AGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           A +N A R  NK + I      S IG +++ +T +
Sbjct: 62  AAMNIANRLENKKEFIL--EDISEIGAIVNYITEE 94


>gi|75675956|ref|YP_318377.1| tRNA (uracil-5-)-methyltransferase Gid [Nitrobacter winogradskyi
           Nb-255]
 gi|123613322|sp|Q3SRR6|TRMFO_NITWN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|74420826|gb|ABA05025.1| Gid protein [Nitrobacter winogradskyi Nb-255]
          Length = 477

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 295 GFQTKLKHGAQTRIFRTIPGLEGAEFARLGGLHRNTFLNSPKLLDVRLRLRAEPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+ G+ +A
Sbjct: 355 QMTGCEGYVESAAIGLLGGLYAA 377


>gi|166364902|ref|YP_001657175.1| tRNA (uracil-5-)-methyltransferase Gid [Microcystis aeruginosa
           NIES-843]
 gi|189040807|sp|B0JFX8|TRMFO_MICAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166087275|dbj|BAG01983.1| glucose inhibited division protein [Microcystis aeruginosa
           NIES-843]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK   +R G   +  +IN P+ L  +L+ K    L  AG
Sbjct: 283 GFQTNLKWGEQTRVFRLIPGLEKAEFVRMGVMHKNTFINSPQLLSSSLQFKSRPTLLAAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR +  L+ +    T + +G + + ++S
Sbjct: 343 QLIGTEGYTAAAAGGWLAGTNAARLALGLETVTLP-TTTMMGSLFEFISS 391


>gi|159030189|emb|CAO91081.1| gid [Microcystis aeruginosa PCC 7806]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLEK   +R G   +  +IN P+ L  +L+ K    L  AG
Sbjct: 283 GFQTNLKWGEQTRVFRLIPGLEKAEFVRMGVMHKNTFINSPQLLSSSLQFKSRPTLLAAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR +  L+ +    T + +G + + ++S
Sbjct: 343 QLIGTEGYTAAAAGGWLAGTNAARLALGLETVTLP-TTTMMGSLFEFISS 391


>gi|86159119|ref|YP_465904.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123736735|sp|Q2ILE0|TRMFO_ANADE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|85775630|gb|ABC82467.1| gid protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 450

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 309 GISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLA 366
           G  T L    Q +  R  +PGL     +R G      +++ P+ L P L  +    LFLA
Sbjct: 281 GFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLAPDLSVRAAPHLFLA 340

Query: 367 GQINGTTGYEEAAAQGLVA 385
           GQI G  GY E+AA GL+A
Sbjct: 341 GQITGVEGYVESAACGLMA 359


>gi|328955477|ref|YP_004372810.1| gid protein [Coriobacterium glomerans PW2]
 gi|328455801|gb|AEB06995.1| gid protein [Coriobacterium glomerans PW2]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T++ +P           Q +  R +PGL      R G      +++   +  +    
Sbjct: 279 GFQTNLTFPE----------QKRVFRMVPGLGHAEFFRMGVMHRNTFVDAPHVLDSSFAV 328

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
             + + LAGQI GT GY EA A GL+AG+N+
Sbjct: 329 PETQVRLAGQITGTEGYTEAIASGLLAGLNT 359


>gi|139439758|ref|ZP_01773149.1| Hypothetical protein COLAER_02180 [Collinsella aerofaciens ATCC
           25986]
 gi|133774908|gb|EBA38728.1| Hypothetical protein COLAER_02180 [Collinsella aerofaciens ATCC
           25986]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 45/106 (42%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    I L  E          G  T L    Q +    +PGLE     R G     
Sbjct: 255 RTGRRPWAAIQLRAENKEKTAYNLVGFQTNLTFGEQKRVFHMVPGLENAEFFRYGVMHRN 314

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            +++   +  +      +G+ LAGQI GT GY EA A GL+A +N+
Sbjct: 315 TFVDAPHVLDSTFAVPGTGVRLAGQITGTEGYMEAVATGLLAALNT 360


>gi|253583756|ref|ZP_04860954.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium varium ATCC
           27725]
 gi|251834328|gb|EES62891.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium varium ATCC
           27725]
          Length = 437

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 25/143 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--- 52
           S +VI++G G AGCEAA   AK G    L           HK      + C+ ++GG   
Sbjct: 3   SKEVIIVGAGLAGCEAAYQLAKRGIKVKLYEMKAKKMTEAHKKDYFAELVCSNSLGGDNL 62

Query: 53  -LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G +  E+  LD L+ ++AD   +          PA  G     DR+ + + +   +
Sbjct: 63  ANASGLMKEELRKLDSLLIKIADKNRV----------PA--GQALAVDRDGFSVEVTEYL 110

Query: 112 LSQENLDVIQGEVAGFNTEKNII 134
            + EN+++I  E      +K I+
Sbjct: 111 RNMENIEIIDEEFTEIPEDKIIL 133



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +I+  +L   TL+ K    ++ AG
Sbjct: 280 GFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFIDSSKLLDETLKLKASDNIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           QI G+ GY  + + G +A IN A +
Sbjct: 340 QITGSEGYVSSISTGAMAAINIAHR 364


>gi|114707239|ref|ZP_01440137.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
 gi|114537435|gb|EAU40561.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
          Length = 473

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGL+     R G      Y++ P+ L  TL  K ++ L  AG
Sbjct: 289 GFQTKLRYGEQAAIFRMIPGLQNAEFARLGGLHRNTYLDSPRLLDATLRLKSLNRLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGCEGYVESAAVGLMAG 367


>gi|148553800|ref|YP_001261382.1| tRNA (uracil-5-)-methyltransferase Gid [Sphingomonas wittichii RW1]
 gi|166989567|sp|A5V4M8|TRMFO_SPHWW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|148498990|gb|ABQ67244.1| gid protein [Sphingomonas wittichii RW1]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGL K    R G      +I +PK L   L  K    +  AG
Sbjct: 281 GFQTKLKHAEQVRLFRTIPGLGKAEFARLGGLHRNTFIQSPKLLDGALRLKSRPNIRFAG 340

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 341 QITGCEGYVESAAIGLLAG 359


>gi|209885371|ref|YP_002289228.1| tRNA:M(5)U-54 methyltransferase [Oligotropha carboxidovorans OM5]
 gi|209873567|gb|ACI93363.1| tRNA:M(5)U-54 methyltransferase [Oligotropha carboxidovorans OM5]
          Length = 477

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q Q +R IPGLE     R G      ++N PK L   L  +    L  AG
Sbjct: 295 GFQTKLKYGAQTQVLRMIPGLEHAEFARLGGLHRNTFLNSPKLLDAQLRLRAEPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+A  GL+AG+ +A
Sbjct: 355 QMTGCEGYVESAGIGLLAGLFAA 377


>gi|154500971|ref|ZP_02039009.1| hypothetical protein BACCAP_04657 [Bacteroides capillosus ATCC
           29799]
 gi|150269995|gb|EDM97514.1| hypothetical protein BACCAP_04657 [Bacteroides capillosus ATCC
           29799]
          Length = 434

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 150/411 (36%), Gaps = 55/411 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGL----G 54
           VIVIG G AG EAA   A+ G    L           H T   G + C+ ++        
Sbjct: 4   VIVIGAGLAGSEAAWQLAQRGIPVELREMKPEKMTPAHHTPWFGELVCSNSLRSDQLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +  L+   AD   ++             G     DR  +  A+  +I S 
Sbjct: 64  VGLLKEELRRMGSLILSCADEHRVE------------AGGALAVDRHGFAQAITEKIRSH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V++GEV     E  +I +     +  +   T+      F     ++      A   
Sbjct: 112 PLITVVEGEVEHLPAEGQVIVA-----SGPLTSDTLAEDIKGFFPESHYLNFFDAAA--- 163

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
              P  +  +  M+  F   R   GTP  ++        T +++        +F T+   
Sbjct: 164 ---PLVTFESVDMESAFFASRYDKGTPDYINCPL-----TAEEYE-------AFWTELCA 208

Query: 235 NRQIEC-GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            ++ E  G    N+    + +E +   A    D   YGP     ++D   + G+     +
Sbjct: 209 AQEAEVHGFEDKNVFEGCMPVEVM---ARRGHDTLCYGPLKPRGLKDP--KTGKEPFAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +    IP L+    +R G      Y++ P+ L 
Sbjct: 264 QLRKDNADGTIYNLVGFQTHLKWPEQKRVFSMIPALKNAEFLRYGVMHRNTYLDSPRLLD 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
                KK   +  AGQI G  GY E+ A G +A +  +R+   L  + F +
Sbjct: 324 RYYRVKKDPRICFAGQITGVEGYVESTASGFLAALELSRRLRGLPPVDFPQ 374


>gi|260433647|ref|ZP_05787618.1| tRNA:M(5)U-54 methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417475|gb|EEX10734.1| tRNA:M(5)U-54 methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 455

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE  +  R G      +IN P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFINSPTLLDAQMRLKSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +   + L  +     DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRLAAAEILGHSLPPVP---QDSAMGALIHHIT 393


>gi|114570442|ref|YP_757122.1| tRNA (uracil-5-)-methyltransferase Gid [Maricaulis maris MCS10]
 gi|122315720|sp|Q0ANF3|TRMFO_MARMM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114340904|gb|ABI66184.1| gid protein [Maricaulis maris MCS10]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE+    R G      ++N PK L   L  K    L  AG
Sbjct: 296 GFQTKMKYGAQGEVLRMIPGLEEARFARLGGIHRNTFLNSPKLLDAQLRLKSQPRLRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+AG  +A
Sbjct: 356 QLIGVEGYVESAAMGLLAGRYAA 378


>gi|221194483|ref|ZP_03567540.1| tRNA:M(5)U-54 methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185387|gb|EEE17777.1| tRNA:M(5)U-54 methyltransferase [Atopobium rimae ATCC 49626]
          Length = 449

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G R    + L  E  +       G  T L    Q +    IPGL +   +R G     
Sbjct: 254 RDGRRPWAAVQLRAENADATAYNLVGFQTNLVWGEQRRVFSMIPGLGEAEFLRYGVMHRN 313

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +++ P  L P+      + + LAGQ+ GT GY EA A GL+A +N+         IC  
Sbjct: 314 SFVDAPHALTPSFAIPH-THIRLAGQLTGTEGYVEAIASGLLAALNTYADLIAAPEICLP 372

Query: 403 RT 404
           +T
Sbjct: 373 KT 374


>gi|83942331|ref|ZP_00954792.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
 gi|83846424|gb|EAP84300.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +  S +  AG
Sbjct: 286 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQSNVRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|159184867|ref|NP_354655.2| tRNA (uracil-5-)-methyltransferase Gid [Agrobacterium tumefaciens
           str. C58]
 gi|26006764|sp|Q8UET6|TRMFO_AGRT5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|159140148|gb|AAK87440.2| glucose inhibited division protein [Agrobacterium tumefaciens str.
           C58]
          Length = 481

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L   +Q    R IPGLE     R G      YI+ P  L  +L  K    L  AG
Sbjct: 292 GFQTKLKYSVQADVFRMIPGLENAEFARLGGLHRNTYIDSPILLDRSLRLKSRPDLRFAG 351

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 352 QITGCEGYVESASVGLLAG 370


>gi|213612576|ref|ZP_03370402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E98-2068]
          Length = 45

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G M
Sbjct: 7  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM 45


>gi|170078989|ref|YP_001735627.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. PCC 7002]
 gi|205830341|sp|B1XK17|TRMFO_SYNP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|169886658|gb|ACB00372.1| glucose inhibited division protein A [Synechococcus sp. PCC 7002]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N  EL   TL+ KK   L  AG
Sbjct: 293 GFQTNLRWGEQKRVFRMIPGLENAEFVRMGVMHRNTFLNSPELLEATLQFKKRPTLLAAG 352

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           Q+ GT GY  AAA G +AG N+AR +  L  +    T + +G + + + S
Sbjct: 353 QLIGTEGYTAAAAGGWLAGTNAARLAQGLTPLTLPET-TMMGALFEFIHS 401


>gi|299134925|ref|ZP_07028116.1| gid protein [Afipia sp. 1NLS2]
 gi|298589902|gb|EFI50106.1| gid protein [Afipia sp. 1NLS2]
          Length = 477

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q   +R IPGLE+    R G      ++N PK L   L  +    L  AG
Sbjct: 295 GFQTKLKYGAQTNVLRMIPGLEQAEFARLGGLHRNTFLNSPKLLDARLRLRAQPRLRFAG 354

Query: 368 QINGTTGYEEAAAQGLVAGINSARKS 393
           Q+ G  GY E+A  GL+AG+ +A ++
Sbjct: 355 QMTGCEGYVESAGIGLLAGLFAAHEA 380


>gi|169839419|ref|ZP_02872607.1| glucose-inhibited division protein A [candidate division TM7
           single-cell isolate TM7a]
          Length = 37

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           GPR+CPS++ KI+ F E+  HQIFLE E + +D
Sbjct: 3   GPRHCPSLDRKIMNFPEKTNHQIFLEQESVESD 35


>gi|327398970|ref|YP_004339839.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Hippea maritima DSM 10411]
 gi|327181599|gb|AEA33780.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Hippea maritima DSM 10411]
          Length = 436

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G +K  G +Y       +V+  + N     L   G  T + YP           Q +  R
Sbjct: 244 GPLKPVGLKYEGKQPFAVVQLRKENKEGTLLSMVGFQTKLTYPE----------QKRVFR 293

Query: 325 TIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            IP L      + G      +I+ P  L   L+ K    +F AGQI G  GY  +A  G+
Sbjct: 294 LIPALRNAEFAKLGSLHRNTFIDSPHLLNEFLQLKSGENIFFAGQITGVEGYMASAVSGI 353

Query: 384 VAGINSARKSNK 395
             G+N A K  K
Sbjct: 354 YVGMNIALKIKK 365


>gi|255263279|ref|ZP_05342621.1| tRNA:M(5)U-54 methyltransferase [Thalassiobium sp. R2A62]
 gi|255105614|gb|EET48288.1| tRNA:M(5)U-54 methyltransferase [Thalassiobium sp. R2A62]
          Length = 446

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 144/394 (36%), Gaps = 55/394 (13%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +IGGG AG EAA  AA  G +  +           H+T  +G M C+ +           
Sbjct: 7   IIGGGMAGSEAAWQAANAGLNVVIHEMRPKVETFAHQTGDLGEMVCSNSFRSDDD----- 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +A+  L   +  A G+     +  K PA  G     DRE +  ++   + S  N+ V 
Sbjct: 62  EQNAVGLLHWEMRAAGGLIMATADKHKLPA--GGALAVDREPFAQSVTAALKSHPNISVS 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP-- 178
             E+    T+ + I             +T  LT+G     + +       A     +P  
Sbjct: 120 YEEITELPTDGHWI------------IATGPLTSGNLADAIANETGKDALAFFDAIAPII 167

Query: 179 ---SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              S  +  ++M+  +D G  +    A L+        T  Q+  E  I     +DK   
Sbjct: 168 YFDSIDMSQAWMQSRYDKGETEEERTAYLNCPM-----TRDQY--EAFIDALLASDKTEF 220

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK---IVRFGERNGHQ 292
           ++ E            ++ E  + +  + G +K  G       E+K   +V+    N   
Sbjct: 221 KEGETAGYFDGCLPIEVMAERGRETLRF-GPMKPVGLTNANDPENKPYAVVQLRRDNALG 279

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
                 G  T + Y            Q   +R IPGL+     R G      ++N P  L
Sbjct: 280 TLYNIVGFQTKMKY----------GAQTDVLRMIPGLQDAQFARLGGIHRNTFLNSPTLL 329

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
              +  K    L  AGQI G  GY E+AA GL+A
Sbjct: 330 DGQMRLKSKPHLRFAGQITGVEGYVESAAMGLLA 363


>gi|307946889|ref|ZP_07662224.1| tRNA:M(5)U-54 methyltransferase [Roseibium sp. TrichSKD4]
 gi|307770553|gb|EFO29779.1| tRNA:M(5)U-54 methyltransferase [Roseibium sp. TrichSKD4]
          Length = 470

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE     R G      ++N PK L  TL+ K    L  AG
Sbjct: 288 GFQTKLRYGAQADIFRMIPGLEDAQFARLGGLHRNTFLNSPKVLDETLKLKAEPRLRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           QI G  GY E+A+ G + GI +A
Sbjct: 348 QITGCEGYVESASVGCMTGIFAA 370


>gi|312114355|ref|YP_004011951.1| gid protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219484|gb|ADP70852.1| gid protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 469

 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N PK L   L  K    +  AG
Sbjct: 289 GFQTKLKHGEQSRVFRMIPGLENAVFARLGGLHRNTFLNSPKVLDGALRLKAAPHVRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A +    D +   +T + +G ++  +T
Sbjct: 349 QVTGVEGYVESAAIGLLAGRFAAAELVGRDPLPPPQT-TALGALLTHIT 396


>gi|308234476|ref|ZP_07665213.1| gid protein [Atopobium vaginae DSM 15829]
 gi|328944069|ref|ZP_08241534.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492038|gb|EGF23812.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae DSM 15829]
          Length = 474

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 38/81 (46%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           G  T L    Q +  R IPGLE+    R G      +++  +   T      + + L GQ
Sbjct: 299 GFQTNLLWGEQKRVFRMIPGLEEAEFFRYGVMHRNSFVDAPKCLDTTFKIPHTKIRLTGQ 358

Query: 369 INGTTGYEEAAAQGLVAGINS 389
           I GT GY EA A GL A +N+
Sbjct: 359 ITGTEGYTEAIASGLFAALNT 379


>gi|295103250|emb|CBL00794.1| tRNA:m(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 146/422 (34%), Gaps = 85/422 (20%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKG 56
           Y V ++G G AGCEAA   A  G    L           HK+     + C+ ++      
Sbjct: 4   YKVTILGAGLAGCEAALWLAGKGVQVELYEQKPVHFSPAHKSEGFAELICSNSLK----- 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                +D+  GL+       G +  +   ++     G     DR+ +  A+ R +   EN
Sbjct: 59  --AERLDSASGLLKEEMRRMGSRL-LTAAEETRVAAGGALAVDRDAFSAAVTRMVEQCEN 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRM 174
           + V + +V                  ++   + +++ TG    G +   IG+L       
Sbjct: 116 ITVHREQV-----------------ETIDESAPILVATGPLTDGALADEIGRLT------ 152

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLD-GKTIIWDKTEKQFADERLIPFS------ 227
           GD           +  F        T   LD GK     + ++  AD    PF+      
Sbjct: 153 GDE----------RLHFYDAVAPIVTAESLDYGKVFAASRYDRGEADYLNCPFNKAEYEA 202

Query: 228 -----FMTDKITNRQIECGI---TRTNLETHRIIMENIKHSAIYSG------------DI 267
                   ++      + G    T+ + + H    + +    +Y G            D 
Sbjct: 203 FHAALASAERAPLHDFDTGAEQSTKPDPDAHGKKADTVT---VYEGCMPIEIMAARGADT 259

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
             +GP     + D     G R    + L  E     +    G  T L    Q +    IP
Sbjct: 260 MRFGPLRPVGLVDPNT--GHRPWANVQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIP 317

Query: 328 GLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           GLE    +R G      +++ P+ L   L  K    +F AGQI G  GY E+AA GL+A 
Sbjct: 318 GLENAEFVRYGVMHRNTFLDAPRVLSAQLCLKTHPNVFFAGQITGFEGYMESAACGLLAA 377

Query: 387 IN 388
            N
Sbjct: 378 RN 379


>gi|254510197|ref|ZP_05122264.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221533908|gb|EEE36896.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 456

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 14/115 (12%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGLE  +  R G      +IN P  L   +  K    +  AG
Sbjct: 296 GFQTKMKYGAQTDVFRMIPGLENASFARLGGIHRNTFINSPTLLDSQMRLKSQPNIRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT------DSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +          RT      DS +G +I  +T
Sbjct: 356 QITGVEGYVESAAMGLLAGRLAAAQ-------LLGRTLPDVPQDSAMGALIHHIT 403


>gi|254477480|ref|ZP_05090866.1| tRNA:m(5)U-54 methyltransferase [Ruegeria sp. R11]
 gi|214031723|gb|EEB72558.1| tRNA:m(5)U-54 methyltransferase [Ruegeria sp. R11]
          Length = 451

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 290 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDSEMRLKSKPHIRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAG-INSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG + +A    K   +     DS +G +I  +T
Sbjct: 350 QITGVEGYVESAAMGLLAGRLAAAEILGK--TLPVVPQDSAMGALIHHIT 397


>gi|254465537|ref|ZP_05078948.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206686445|gb|EDZ46927.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 479

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE  +  R G      +IN P  L   +  K    +  AG
Sbjct: 318 GFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFINSPTLLDAQMRLKSKPNIRFAG 377

Query: 368 QINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +    +L  +     DS +G +I  +T
Sbjct: 378 QITGVEGYVESAAMGLLAGRLAAAEILGRELPEVP---QDSAMGALIHHIT 425


>gi|217979041|ref|YP_002363188.1| tRNA (uracil-5-)-methyltransferase Gid [Methylocella silvestris
           BL2]
 gi|217504417|gb|ACK51826.1| gid protein [Methylocella silvestris BL2]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    R IPGLE+    R G      ++N PK L      +    L  AG
Sbjct: 291 GFQTKLKHGAQIAVFRAIPGLERAEFARLGGLHRNTFLNSPKVLDSAFRLRAQPRLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAG-INSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+AA GLV G + +A +S   +        + +G +I+ +T+
Sbjct: 351 QITGCEGYVESAAIGLVVGRMAAADRSG--EAFLPPPATTALGALINHITA 399


>gi|257440566|ref|ZP_05616321.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196889|gb|EEU95173.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 458

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +++ P+ L   L  K+   +F AG
Sbjct: 299 GFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAPRVLDAGLFLKEHPNVFFAG 358

Query: 368 QINGTTGYEEAAAQGLVAG--INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           QI G  GY E+AA GL+A   I +  +  +L        D+  G +I  LT++      +
Sbjct: 359 QITGFEGYMESAACGLLAARSIYARLEGRQLPP---PPVDTMCGALIQYLTTEN-----K 410

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            F         L P  A++R     ++   + ER    F +++ E
Sbjct: 411 HFQPMGANMGILPPLPAESRPRDKRLRYMAVAERAVASFQQWLNE 455


>gi|126726442|ref|ZP_01742283.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
 gi|126704305|gb|EBA03397.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
          Length = 461

 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q   +R IPGLE     R G      ++N P  L   +  K    L  AG
Sbjct: 301 GFQTKMKYGAQTDVLRQIPGLEGAKFARLGGIHRNTFLNSPTLLDDQMRMKSKPNLRFAG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARK--SNKLDC 398
           QI G  GY E+AA GL+AG  +A +    KLD 
Sbjct: 361 QITGVEGYVESAAMGLLAGRMAAAEILGGKLDT 393


>gi|160945999|ref|ZP_02093225.1| hypothetical protein FAEPRAM212_03532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443730|gb|EDP20735.1| hypothetical protein FAEPRAM212_03532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 458

 Score = 46.2 bits (108), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 146/422 (34%), Gaps = 85/422 (20%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKG 56
           Y V ++G G AGCEAA   A  G    L           HK+     + C+ ++      
Sbjct: 4   YKVTILGAGLAGCEAALWLAGKGVQIELYEQKPVHFSPAHKSEGFAELICSNSLK----- 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                +D+  GL+       G +  +   ++     G     DR+ +  A+ R +   EN
Sbjct: 59  --AERLDSASGLLKEEMRRMGSRL-LTAAEETRVAAGGALAVDRDAFSAAVTRMVEQCEN 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRM 174
           + V + +V                  ++   + +++ TG    G +   IG+L       
Sbjct: 116 ITVHREQV-----------------ETIDESAPILVATGPLTDGALADEIGRLT------ 152

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLD-GKTIIWDKTEKQFADERLIPFS------ 227
           GD           +  F        T   LD GK     + ++  AD    PF+      
Sbjct: 153 GDE----------RLHFYDAVAPIVTAESLDYGKVFAASRYDRGEADYLNCPFNKAEYEA 202

Query: 228 -----FMTDKITNRQIECGI---TRTNLETHRIIMENIKHSAIYSG------------DI 267
                   ++      + G    T+ + + H    + +    +Y G            D 
Sbjct: 203 FHAALASAERAPLHDFDTGAEQSTKPDPDAHGKKADTVT---VYEGCMPIEIMAARGADT 259

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
             +GP     + D     G R    + L  E     +    G  T L    Q +    IP
Sbjct: 260 MRFGPLRPVGLVDPNT--GHRPWANVQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIP 317

Query: 328 GLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           GLE    +R G      +++ P+ L   L  K    +F AGQI G  GY E+AA GL+A 
Sbjct: 318 GLENAEFVRYGVMHRNTFLDAPRVLSAQLCLKTHPNVFFAGQITGFEGYMESAACGLLAA 377

Query: 387 IN 388
            N
Sbjct: 378 RN 379


>gi|163793150|ref|ZP_02187126.1| glucose-inhibited division protein A [alpha proteobacterium BAL199]
 gi|159181796|gb|EDP66308.1| glucose-inhibited division protein A [alpha proteobacterium BAL199]
          Length = 463

 Score = 46.2 bits (108), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  RTIPGLE     R G      +IN P+ L  +L  K    L  AG
Sbjct: 291 GFQTKMRHGEQVRVFRTIPGLENAEFARLGGLHRNTFINSPRLLDGSLRLKVEPRLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E++A GL+AG
Sbjct: 351 QITGVEGYVESSAIGLLAG 369


>gi|257784506|ref|YP_003179723.1| gid protein [Atopobium parvulum DSM 20469]
 gi|257473013|gb|ACV51132.1| gid protein [Atopobium parvulum DSM 20469]
          Length = 444

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           R G+R    + L  E          G  T L    Q +    IPGLE    +R G     
Sbjct: 254 RTGKRPWAAVQLRAENTAKTAFNLVGFQTNLTWGEQKRVFTLIPGLENAEFVRYGVMHRN 313

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN-----SARKSNKL 396
            +++ P  L  +      S + LAGQI GT GY EA A GL+A +N     S +K+ KL
Sbjct: 314 SFVDSPHALDGSFGIPGTS-IILAGQITGTEGYVEAIASGLLAALNMYARLSGKKTFKL 371


>gi|225019247|ref|ZP_03708439.1| hypothetical protein CLOSTMETH_03200 [Clostridium methylpentosum
           DSM 5476]
 gi|224947878|gb|EEG29087.1| hypothetical protein CLOSTMETH_03200 [Clostridium methylpentosum
           DSM 5476]
          Length = 444

 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +++ P+ L      +K   +  AG
Sbjct: 280 GFQTNLKFGEQKRIFSMIPGLEHAEFVRYGVMHRNTFLDSPRLLDSHFRLRKEPRIRFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           QI G  GY E+AA G+ AG+  AR+ +    +    TDS +G +   ++ + V
Sbjct: 340 QITGVEGYIESAASGIYAGLTLARELSGQSELTLP-TDSMLGALSHYISDETV 391


>gi|22297993|ref|NP_681240.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosynechococcus
           elongatus BP-1]
 gi|26006759|sp|P59109|TRMFO_THEEB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|22294171|dbj|BAC08002.1| glucose inhibited division protein [Thermosynechococcus elongatus
           BP-1]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           D   +GP     + D   R GER      L  E  +  +    G  T L    Q +  R 
Sbjct: 239 DTLRFGPLKPVGLRDP--RTGERPYAVAQLRQEDRHGQLWNLVGFQTNLRWGEQQRVFRM 296

Query: 326 IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           IPGLE+   +R G      ++N PK L  +L+ +    L  AGQI GT GY  AAA G +
Sbjct: 297 IPGLEQAEFVRMGVMHRNTFLNAPKLLKASLQFRDRPTLLAAGQITGTEGYTAAAAGGWL 356

Query: 385 AGINSARKSNKLDCICFSRT 404
           AG N+AR +  L  +    T
Sbjct: 357 AGTNAARLARGLAPLVLPPT 376


>gi|99081232|ref|YP_613386.1| tRNA (uracil-5-)-methyltransferase Gid [Ruegeria sp. TM1040]
 gi|99037512|gb|ABF64124.1| gid protein [Ruegeria sp. TM1040]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGLE     R G      ++N P  L   +  K    +  AG
Sbjct: 290 GFQTKMKYGAQTDVFRMIPGLENAKFARLGGIHRNTFLNSPTLLDHEMRLKSKPNIRFAG 349

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T
Sbjct: 350 QVTGVEGYVESAAMGLLAGRMAAAEILGKDLPQVPQ-DSAMGALIHHIT 397


>gi|254469783|ref|ZP_05083188.1| tRNA:m(5)U-54 methyltransferase [Pseudovibrio sp. JE062]
 gi|211961618|gb|EEA96813.1| tRNA:m(5)U-54 methyltransferase [Pseudovibrio sp. JE062]
          Length = 458

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      ++N P+ L   +  K +  +  AG
Sbjct: 283 GFQTKLKYGAQSEIFRMIPGLEDAQFARLGGLHRNTFLNSPRLLDEQMRLKALPHIRFAG 342

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+ A G + G+ +A ++   D I      +  G +I+ +T
Sbjct: 343 QITGCEGYVESTAVGCMTGLFAAHQALGTD-IAPPPATTACGAIINHIT 390


>gi|114778426|ref|ZP_01453271.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
 gi|114551270|gb|EAU53828.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
          Length = 448

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T +    Q +    IPGLE+    R G      +I +P  L  TL  KK   +  AG
Sbjct: 288 GFQTKMTYGEQKRVFTMIPGLEQAEFFRLGSLHRNTFIKSPALLDNTLRLKKEPRILFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 348 QITGVEGYVESASMGLMAG 366


>gi|205830475|sp|Q1GGU2|TRMFO_SILST RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 446

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGLE     R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTDVFRMIPGLENAKFARLGGIHRNTFLNSPTLLDHEMRLKSKPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T
Sbjct: 346 QVTGVEGYVESAAMGLLAGRMAAAEILGKDLPQVPQ-DSAMGALIHHIT 393


>gi|257465869|ref|ZP_05630180.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917026|ref|ZP_07913266.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690901|gb|EFS27736.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 435

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
           G  T L    Q +    IP L++   IR G      +IN  +L    L  K  + L+ AG
Sbjct: 279 GFQTNLKWGEQKRVFSMIPALKQAEFIRYGVMHRNTFINSTKLLEKDLSLKTQNNLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           QI G  GY  A A G +A IN A K
Sbjct: 339 QITGGEGYVAAMATGCMAAINIANK 363



 Score = 40.4 bits (93), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 25/130 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--LGK 55
           +VIV+G G AG EA    AK G    L           H       + C+ ++GG  LG 
Sbjct: 4   EVIVVGAGLAGSEATYQLAKRGIPVRLYEMKQQKKTEAHHYDYFAELVCSNSLGGDHLGN 63

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD   +          PA  G     DR  +   + R + +
Sbjct: 64  ASGLMKEELRLLDSLLVRVADETKV----------PA--GQALAVDRHGFSEKITRILRN 111

Query: 114 QENLDVIQGE 123
            EN+ +++ E
Sbjct: 112 MENITIVEEE 121


>gi|126736453|ref|ZP_01752194.1| gid protein [Roseobacter sp. CCS2]
 gi|126713991|gb|EBA10861.1| gid protein [Roseobacter sp. CCS2]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    +TIPGLE+    R G      +IN P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYAAQKAVFKTIPGLEEAEFARLGGIHRNTFINAPTLLDDEMRLRSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|307265444|ref|ZP_07547000.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919558|gb|EFN49776.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 52

 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 34/40 (85%)

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +SNE KEKL+ ++P ++ QAS+I G++PA +++LLIY+++
Sbjct: 1   MSNEAKEKLTKIRPTSIGQASRISGVSPADISVLLIYMQQ 40


>gi|56696568|ref|YP_166925.1| tRNA (uracil-5-)-methyltransferase Gid [Ruegeria pomeroyi DSS-3]
 gi|81170599|sp|Q5LST0|TRMFO_SILPO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56678305|gb|AAV94971.1| gid protein [Ruegeria pomeroyi DSS-3]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    +TIPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKTIPGLENASFARLGGIHRNTFLNSPTLLDAQMRMKSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +      +     DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRLAAAEIQG-RALPEVPQDSAMGALIHHIT 393


>gi|159044024|ref|YP_001532818.1| tRNA (uracil-5-)-methyltransferase Gid [Dinoroseobacter shibae DFL
           12]
 gi|189040806|sp|A8LK18|TRMFO_DINSH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157911784|gb|ABV93217.1| gid protein [Dinoroseobacter shibae DFL 12]
          Length = 451

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE+    R G      +IN P  L   +       L  AG
Sbjct: 286 GFQTKMKYGAQKEVLRMIPGLEEARFARLGGIHRNTFINAPTLLDDQMRLHSRPNLRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           QI G  GY E+AA GL+AG  +A
Sbjct: 346 QITGVEGYVESAAMGLLAGRMAA 368


>gi|257452339|ref|ZP_05617638.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
 gi|317058882|ref|ZP_07923367.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
 gi|313684558|gb|EFS21393.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
           G  T L    Q +    IP L +   IR G      +IN  +L    L  K  + L+ AG
Sbjct: 279 GFQTNLKWGEQKRVFSMIPALRQAEFIRYGVMHRNTFINSTKLLEKDLSLKTQNNLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARK 392
           QI G  GY  A A G +A IN A K
Sbjct: 339 QITGGEGYVAAMATGCMAAINIANK 363



 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 25/130 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--LGK 55
           +VIV+G G AG EAA   AK G    L           H       + C+ ++GG  LG 
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIPVRLYEMKQQKKTEAHHYDYFAELVCSNSLGGDHLGN 63

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD   +          PA  G     DR  +   + + + +
Sbjct: 64  ASGLMKEELRLLDSLLVRVADETKV----------PA--GQALAVDRHGFSEKITQILRN 111

Query: 114 QENLDVIQGE 123
            EN+ +++ E
Sbjct: 112 MENITIVEEE 121


>gi|261368260|ref|ZP_05981143.1| tRNA:M(5)U-54 methyltransferase [Subdoligranulum variabile DSM
           15176]
 gi|282569775|gb|EFB75310.1| tRNA:M(5)U-54 methyltransferase [Subdoligranulum variabile DSM
           15176]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 140/396 (35%), Gaps = 63/396 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGHLVR 60
           +IG G AGCEAA   A  G    L           HK+     + C+ ++          
Sbjct: 5   IIGAGLAGCEAALWLADAGVQVDLYEQKPGKFSPAHKSEGFAELICSNSLK-------AE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA------DRELYRLAMQREILSQ 114
             D+  GL+        ++ R +     PA    R  A      DR+++  A+  ++   
Sbjct: 58  RPDSASGLLK-------LEMRAMGSHLLPAAETARVAAGGALAVDRDVFSAAVTNQVERH 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKIPAGR 173
            N+ + + EV   +    ++             ++  LT G     +  + G  ++    
Sbjct: 111 PNITIHREEVTALDESVPVL------------VASGPLTEGALAEAIAALTGNHRL---S 155

Query: 174 MGDSPSNSLFNSFMKFD--FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
             D+ +  +    + +D  F   R   G     D     ++K E +         +F   
Sbjct: 156 FYDAVAPIVTAESLDYDKVFAASRYGRG---EADYLNCPFNKEEYE---------AFHAA 203

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I   +        +L  +   M  I+  A    D   +GP     + D   R G R   
Sbjct: 204 LIAAERAPLHDFDGDLTVYEGCMP-IEVMAARGADTIRFGPLRPVGLRDP--RTGHRPWA 260

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  E     +    G  T L    Q +    IPGLE    +R G      ++ +P+ 
Sbjct: 261 NVQLRAENTARTLYNLVGFQTNLKWGEQKRVFSMIPGLEHAEFVRYGVMHRNTFLESPRV 320

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           L      K+   +F AGQI G  GY E+AA GL+A 
Sbjct: 321 LTARQYLKEHPNVFFAGQITGFEGYMESAASGLLAA 356


>gi|325496008|gb|EGC93867.1| NADH:flavin oxidoreductase [Escherichia fergusonii ECD227]
          Length = 670

 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           + R+ +V+VIGGG AG EAA  AA++G  T L+  KT  +G +SC
Sbjct: 380 VTRTTNVVVIGGGTAGMEAACTAAEVGCMTWLLEEKTH-LGGLSC 423


>gi|218547528|ref|YP_002381319.1| NADH:flavin oxidoreductase [Escherichia fergusonii ATCC 35469]
 gi|218355069|emb|CAQ87677.1| NADH:flavin oxidoreductase [Escherichia fergusonii ATCC 35469]
 gi|324112515|gb|EGC06492.1| NADH:flavin oxidoreductase/NADH oxidase [Escherichia fergusonii
           B253]
          Length = 670

 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           + R+ +V+VIGGG AG EAA  AA++G  T L+  KT  +G +SC
Sbjct: 380 VTRTTNVVVIGGGTAGMEAACTAAEVGCMTWLLEEKTH-LGGLSC 423


>gi|313115000|ref|ZP_07800493.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622691|gb|EFQ06153.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 457

 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +++ P+ L   L  K+   +F AG
Sbjct: 298 GFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAPRVLSAQLCLKEHPNVFFAG 357

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+A 
Sbjct: 358 QITGFEGYMESAACGLLAA 376


>gi|259416559|ref|ZP_05740479.1| tRNA:M(5)U-54 methyltransferase [Silicibacter sp. TrichCH4B]
 gi|259347998|gb|EEW59775.1| tRNA:M(5)U-54 methyltransferase [Silicibacter sp. TrichCH4B]
          Length = 446

 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQADVFRMIPGLENASFARLGGIHRNTFLNSPTLLDHEMRLKSKPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDC-ICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A  +  LD  +     DS +G +I  +T
Sbjct: 346 QVTGVEGYVESAAMGLLAGRFAA--AEILDKELPHVPQDSAMGALIHHIT 393


>gi|160934424|ref|ZP_02081811.1| hypothetical protein CLOLEP_03297 [Clostridium leptum DSM 753]
 gi|156867097|gb|EDO60469.1| hypothetical protein CLOLEP_03297 [Clostridium leptum DSM 753]
          Length = 439

 Score = 45.1 bits (105), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +V+  + N  +      G  T++ +P           Q +    IP L+    +R G   
Sbjct: 265 VVQLRQENREKTLYNLVGFQTNLRFPE----------QRRVFSMIPALKNAEFVRYGVMH 314

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +I+ P+ L      K    LF AGQ+ G  GY  A   GL+AG N+ R+    + + 
Sbjct: 315 RNTFIDSPRLLRRDFSMKTRPDLFFAGQLTGLEGYLAAMFSGLLAGKNAVRRCQGRETLV 374

Query: 401 FSRTDSYIGVMIDDLTSKGV 420
             R ++ +G +   ++ + V
Sbjct: 375 LPR-ETMMGALSHYISDESV 393


>gi|254450907|ref|ZP_05064344.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 238]
 gi|198265313|gb|EDY89583.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 238]
          Length = 440

 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  N  R G      ++N P  L   +  K    +  AG
Sbjct: 275 GFQTKMKYGAQTDVFKRIPGLENANFARLGGIHRNTFLNSPTLLDGQMRLKSKPNIRFAG 334

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 335 QITGVEGYVESAAMGLLAG 353


>gi|254486641|ref|ZP_05099846.1| tRNA:m(5)U-54 methyltransferase [Roseobacter sp. GAI101]
 gi|214043510|gb|EEB84148.1| tRNA:m(5)U-54 methyltransferase [Roseobacter sp. GAI101]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +    +  AG
Sbjct: 296 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQPNIRFAG 355

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 356 QITGVEGYVESAAMGLLAG 374


>gi|83953550|ref|ZP_00962271.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
 gi|83841495|gb|EAP80664.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQPNVRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|291530277|emb|CBK95862.1| tRNA:m(5)U-54 methyltransferase [Eubacterium siraeum 70/3]
          Length = 453

 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    I GL+    +R G      ++N P  L           ++ AG
Sbjct: 292 GFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDNIYFAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G++AGIN AR
Sbjct: 352 QMTGVEGYVESAASGIIAGINLAR 375


>gi|291557092|emb|CBL34209.1| tRNA:m(5)U-54 methyltransferase [Eubacterium siraeum V10Sc8a]
          Length = 453

 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    I GL+    +R G      ++N P  L           ++ AG
Sbjct: 292 GFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDNIYFAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G++AGIN AR
Sbjct: 352 QMTGVEGYVESAASGIIAGINLAR 375


>gi|167751470|ref|ZP_02423597.1| hypothetical protein EUBSIR_02466 [Eubacterium siraeum DSM 15702]
 gi|167655278|gb|EDR99407.1| hypothetical protein EUBSIR_02466 [Eubacterium siraeum DSM 15702]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +    I GL+    +R G      ++N P  L           ++ AG
Sbjct: 292 GFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDNIYFAG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSAR 391
           Q+ G  GY E+AA G++AGIN AR
Sbjct: 352 QMTGVEGYVESAASGIIAGINLAR 375


>gi|254436524|ref|ZP_05050018.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 307]
 gi|198251970|gb|EDY76284.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 307]
          Length = 451

 Score = 44.7 bits (104), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  N  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTDVFKRIPGLENANFARLGGIHRNTFLNSPTLLDGQMRLKTKPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|220919055|ref|YP_002494359.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956909|gb|ACL67293.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+  K +  G  S N    G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV-EKEAVPGGASANT---GTIPSKALRET-A 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQENLDVIQGE 123
           L     R  DA GI+ RV      P + G R     RE  R+   R  L+   +++ +G 
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSRI---RSALNHAGVEMFRG- 113

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +A F     I  S+       +    V+L TGT
Sbjct: 114 IASFVDPHTIRVSVPDGGQQDLHAEVVLLATGT 146


>gi|257463633|ref|ZP_05628024.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
 gi|317061185|ref|ZP_07925670.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
 gi|313686861|gb|EFS23696.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
          Length = 435

 Score = 44.3 bits (103), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
           G  T L    Q +    IP L++ + +R G      ++N  +L  + L  K    L+ AG
Sbjct: 279 GFQTNLKWGEQKRVFSMIPALKQADFLRYGVMHRNTFLNSTKLLKSDLALKSQENLYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A + G +A IN A K    +        + IG +I  +T +
Sbjct: 339 QITGGEGYVAAISTGCIAAINIANKLQGKEAFILEDVTA-IGALIRYITEE 388



 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 25/130 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG--LGK 55
           +VIV+G G AG EAA   AK G S  L           H       + C+ ++GG  LG 
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGISVQLYEMKGQKKTEAHHYDYFAELVCSNSLGGNHLGN 63

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD   +          PA  G     DR  +   +   + +
Sbjct: 64  ASGLMKEELRFLDSLLIRVADETKV----------PA--GQALAVDRHEFSEKVTEILRT 111

Query: 114 QENLDVIQGE 123
            EN+ +++ E
Sbjct: 112 MENITIVEEE 121


>gi|289580349|ref|YP_003478815.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
 gi|289529902|gb|ADD04253.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
          Length = 458

 Score = 44.3 bits (103), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGG 52
           +YD++V+GGG AGC AA  AAK G    L+  KT   G  ++C   I G
Sbjct: 6  EAYDIVVVGGGTAGCFAATTAAKEGLDVVLLERKTEEEGGYIACGDGIKG 55


>gi|14318501|ref|NP_116635.1| Lpd1p [Saccharomyces cerevisiae S288c]
 gi|118678|sp|P09624|DLDH_YEAST RecName: Full=Dihydrolipoyl dehydrogenase, mitochondrial;
          AltName: Full=Dihydrolipoamide dehydrogenase; AltName:
          Full=Glycine decarboxylase complex subunit L; AltName:
          Full=Lipoamide dehydrogenase component of pyruvate
          dehydrogenase complex; AltName: Full=Pyruvate
          dehydrogenase complex E3 component; Flags: Precursor
 gi|171390|gb|AAA34565.1| dihydrolipoamide dehydrogenase [Saccharomyces cerevisiae]
 gi|171848|gb|AAB63974.1| lipoamide dehydrongenase [Saccharomyces cerevisiae]
 gi|559939|emb|CAA86354.1| lpd1, dhlp1 [Saccharomyces cerevisiae]
 gi|836736|dbj|BAA09220.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae]
 gi|285811876|tpg|DAA12421.1| TPA: Lpd1p [Saccharomyces cerevisiae S288c]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  +    G+   + C P+   L   HL
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 82

Query: 59 VREI 62
            ++
Sbjct: 83 FHQM 86


>gi|182679203|ref|YP_001833349.1| tRNA (uracil-5-)-methyltransferase Gid [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|205830325|sp|B2IGU6|TRMFO_BEII9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|182635086|gb|ACB95860.1| gid protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 471

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    RTIPGLE+    R G      ++N PK L   L  K    L  AG
Sbjct: 287 GFQTKLKHAEQIALFRTIPGLEQARFARLGGLHRNIFLNTPKVLDMRLRLKADPRLRFAG 346

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKL-DCICFSRTDSYIGVMIDDLTS 417
           QI G  GY E+A  GL+ G  +A    +L +      T + +G +++ +T+
Sbjct: 347 QITGCEGYVESAGIGLLVGRMAA--CERLGESFVPPPTTTALGALLNHITA 395


>gi|259146172|emb|CAY79431.1| Lpd1p [Saccharomyces cerevisiae EC1118]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  +    G+   + C P+   L   HL
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 82

Query: 59 VREI 62
            ++
Sbjct: 83 YHQM 86


>gi|151940744|gb|EDN59131.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae YJM789]
 gi|190406554|gb|EDV09821.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae RM11-1a]
 gi|207345694|gb|EDZ72432.1| YFL018Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323333715|gb|EGA75107.1| Lpd1p [Saccharomyces cerevisiae AWRI796]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  +    G+   + C P+   L   HL
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 82

Query: 59 VREI 62
            ++
Sbjct: 83 YHQM 86


>gi|15806684|ref|NP_295404.1| GidA-like protein [Deinococcus radiodurans R1]
 gi|6459450|gb|AAF11239.1|AE002010_2 GidA-related protein [Deinococcus radiodurans R1]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 51/221 (23%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGKGHLVREID 63
           YDV V+G G +G E A   A+ G    L++    ++G++   P + G     G +  ++ 
Sbjct: 28  YDVAVVGAGVSGTELAWRLARAGQDVLLVSQALDSLGNL-YQPTVAGADFPPGSVFAQVA 86

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A     G   D  G  F                      +RL ++ EI +   + ++Q  
Sbjct: 87  A-----GMAPDVDGWTF----------------------HRL-LKAEIEATSGIHLLQSC 118

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V   + E+  +  +   +   +   TVVL  G+FL+G + IG     AGR+ +   + L 
Sbjct: 119 VTALDEEETQV-VLSTWEGPQLHARTVVLAVGSFLKGRLLIGDTMEDAGRLSEVAYDFLA 177

Query: 184 NSFM------------------KFDFDTGRLKTGTPARLDG 206
           +  +                    D+D  R  T  P+ LDG
Sbjct: 178 DDLLLSGVWLVGAEQTAHGVEGAPDYDV-RFLTPAPSELDG 217


>gi|256268878|gb|EEU04228.1| Lpd1p [Saccharomyces cerevisiae JAY291]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  +    G+   + C P+   L   HL
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 82

Query: 59 VREI 62
            ++
Sbjct: 83 YHQM 86


>gi|84625728|ref|YP_453100.1| hydroxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369668|dbj|BAE70826.1| hydroxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDQVLFQRARAAGVDAREQ 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 134 VSV---EQVAFDGEQPLLQA 150


>gi|15826394|pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 gi|15826395|pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 gi|61680085|pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
          Complexed With Nad+
 gi|61680086|pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
          Complexed With Nad+
          Length = 478

 Score = 44.3 bits (103), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  +    G+   + C P+   L   HL
Sbjct: 2  INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 61

Query: 59 VREI 62
            ++
Sbjct: 62 FHQM 65


>gi|291280178|ref|YP_003497013.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
 gi|290754880|dbj|BAI81257.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
          Length = 433

 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG   ++V   G  T +    Q +  R IPGLE    +R G      Y+   +   +   
Sbjct: 270 EGRAYNIV---GFQTKMKIGAQKEVFRLIPGLENAEFLRYGSIHRNTYVRACDYLDSFFR 326

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLV 384
            K   LF AGQI G  GY E+AA  L+
Sbjct: 327 YKDDLLFFAGQITGVEGYIESAATSLI 353



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 25/140 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IGGG AG E A   A+ G    L           H+T  +G + C+ ++        
Sbjct: 5   VTIIGGGLAGSELAFQLAESGIKVVLYEMRPKKMTEAHETGFLGELLCSNSLKAESLDTA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E++ L+ L+ +VA            KK     G     DRE +   +   + + 
Sbjct: 65  SGLLKAEMEMLNSLIIKVA------------KKNRVPAGNALAVDREKFAKEITEILENH 112

Query: 115 ENLDVIQGEVAGFNTEKNII 134
           EN+ VI+ EV     ++ ++
Sbjct: 113 ENIKVIREEVKSIPKDRPLV 132


>gi|149915273|ref|ZP_01903801.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter sp. AzwK-3b]
 gi|149810994|gb|EDM70833.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter sp. AzwK-3b]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE  +  R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSRPHIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|58583944|ref|YP_202960.1| hydroxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188574732|ref|YP_001911661.1| hydroxylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428538|gb|AAW77575.1| hydroxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188519184|gb|ACD57129.1| hydroxylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 461

 Score = 43.9 bits (102), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 85

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDQVLFQRARAAGVDAREQ 145

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 146 VSV---EQVAFDGEQPLLQA 162


>gi|166710288|ref|ZP_02241495.1| hydroxylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLAEVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDQVLFQRARAVGVDAREQ 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 134 VSV---EQVAFDGEQPLLQA 150


>gi|83952147|ref|ZP_00960879.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
 gi|83837153|gb|EAP76450.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
          Length = 453

 Score = 43.9 bits (102), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE     R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQADVFKMIPGLENARFARLGGIHRNTFLNSPTLLDDQMRLKSRPHIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG-INSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG + +A  S K         DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRLAAAELSGKTPPPV--PQDSAMGALIHHIT 393


>gi|302339566|ref|YP_003804772.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636751|gb|ADK82178.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
          Length = 489

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 33/171 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++ YDVIV GGG +G  AA  +A+ GAST LI  +   +G   C     G    HL  
Sbjct: 7   IVDKKYDVIVCGGGTSGVAAAIASARGGASTLLIE-RVGALGGQLCFSGPPGFAFAHLFN 65

Query: 61  EIDALDGLMGRVADAAGI--QFRVLNVKKGPAVRGPRTQA-----------DRELYRLA- 106
                        DAAGI  +     +K+G A+   + +            D + + L  
Sbjct: 66  PKGE--------QDAAGIIQEIHTRMLKEGHALPHLKPEHRLEGGYTFSYIDPDWFALTI 117

Query: 107 ---MQRE----ILSQENLDVIQ--GEVAGFNTEKNIISSIVMQDNSMIRCS 148
              M+ E    +L    +DV+Q   +V G   E N   ++++Q N +I C+
Sbjct: 118 FEMMEEEGVELLLHSLVVDVVQDGNKVTGVEVE-NTNGTMIIQGNIIIDCT 167


>gi|126737646|ref|ZP_01753376.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
 gi|126721039|gb|EBA17743.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
          Length = 447

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q Q  + IPGL+  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQAQVFKMIPGLKNASFARLGGIHRNTFLNSPTLLDSQMRLKSKPHIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +    +L  +     DS +G +I  +T
Sbjct: 346 QITGVEGYVESAAMGLLAGRLAAAEILDQELPEVP---QDSAMGALIHHIT 393


>gi|90419281|ref|ZP_01227191.1| putative MerA, mercuric ion reductase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336218|gb|EAS49959.1| putative MerA, mercuric ion reductase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 513

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+ V+G G AG  AA  AA LGA  ALI H   TIG    N  +G +    ++R  +A
Sbjct: 51  SYDLAVVGAGSAGFSAAITAADLGARVALIGH--GTIGGTCVN--VGCVPSKTMIRAAEA 106

Query: 65  LDG 67
           L G
Sbjct: 107 LHG 109


>gi|197124281|ref|YP_002136232.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter sp.
           K]
 gi|196174130|gb|ACG75103.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter sp. K]
          Length = 476

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+  K +  G  S N    G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV-EKEAVPGGASANT---GTIPSKALRET-A 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQENLDVIQGE 123
           L     R  DA GI+ RV      P + G R     RE  R+   R  L+   +++ +G 
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSRI---RSALNHAGVEMFRG- 113

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +A F     I  ++       +    V+L TGT
Sbjct: 114 IASFVDPHTIRVAVPDGGQQDLHAEVVLLATGT 146


>gi|289670826|ref|ZP_06491901.1| hydroxylase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 420

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S +L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVSLLEKEQHPRFHIGESLLPMNMPILQRLGVLEDVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 74  AVGVLKRGADFPNDSGGYNTFRFSQALDAKADFAFQVPRAQFDQVLFQRARAVGVDARER 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 134 VHV---EQVTFDGEQPVLQA 150


>gi|289664703|ref|ZP_06486284.1| hydroxylase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 461

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S +L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVSLLEKEQHPRFHIGESLLPMNMPILQRLGVLEDVR 85

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 86  AVGVLKRGADFPNDSGGYNTFRFSQALDAKADFAFQVPRAQFDQVLFQRARAVGVDARER 145

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 146 VHV---EQVTFDGEQPVLQA 162


>gi|114768818|ref|ZP_01446444.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
 gi|114549735|gb|EAU52616.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
          Length = 449

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q + +  IPGLE     R G      +IN P  L   +  K    +  AG
Sbjct: 289 GFQTKMKYSEQTRVLSMIPGLENAKFARLGGIHRNTFINSPLLLDDQMRLKTRPNIRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGVEGYVESAAMGLLAG 367


>gi|237717677|ref|ZP_04548158.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452996|gb|EEO58787.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 624

 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T LI  +T  +G M  +  +  +   +     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAAT-LIVEETEWLGGMLTSAGVSAVDGNY----- 76

Query: 63  DALDGLMGRVADAAGIQFRVLN-VKKG--PAVRGPRTQADRELYRLAMQREILSQENLDV 119
           D   GL G   +     +  L+ +K G   AV    +  ++  + +     + +++NL V
Sbjct: 77  DLPAGLFGEFREHLADYYGGLDSLKTGWVSAVLFEPSVGNKIFHEM-----VDAEKNLKV 131

Query: 120 IQ-GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                +     EK++ I+ I MQD+++ + S  +L  GT L  +  +  +K   G
Sbjct: 132 WHNATLVKLEREKDVWIAQIQMQDHTIKKVSAKILIDGTELGDIAKMCGVKYDIG 186


>gi|119386785|ref|YP_917840.1| tRNA (uracil-5-)-methyltransferase Gid [Paracoccus denitrificans
           PD1222]
 gi|166989563|sp|A1B9F0|TRMFO_PARDP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|119377380|gb|ABL72144.1| gid protein [Paracoccus denitrificans PD1222]
          Length = 446

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGL+  +  R G      ++N P+ +   L  +    L  AG
Sbjct: 285 GFQTKMKYGAQVDVFRRIPGLQDASFARLGGIHRNTFLNSPRLIDDRLRLRARPHLRFAG 344

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           Q+ G  GY E+AA GL+AG  +A ++   D      T S +G ++  +T
Sbjct: 345 QVTGVEGYVESAAMGLLAGRMAAAEALGRDLPPPPATTS-MGALVSHIT 392


>gi|86160249|ref|YP_467034.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776760|gb|ABC83597.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+  K +  G  S N    G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV-EKEAVPGGASANT---GTIPSKALRET-A 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQENLDVIQGE 123
           L     R  DA GI+ RV      P + G R     RE  R+   R  L+   +++ +G 
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSRI---RSALNHAGVEMFRG- 113

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +A F     I  ++       +    V+L TGT
Sbjct: 114 IASFVDPHTIRVAVPDGGQQDLHAEVVLLATGT 146


>gi|15055554|gb|AAG38844.2| putative halogenase [Xanthomonas oryzae pv. oryzae]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 85

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D+ L++ A    + ++E 
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDQVLFQRARAAGVDAREQ 145

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 146 VSV---EQVAFDGEQPLLQA 162


>gi|84500842|ref|ZP_00999077.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
 gi|84390909|gb|EAQ03327.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
          Length = 455

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE     R G      ++N P  L   +  +    +  AG
Sbjct: 288 GFQTKMKYGAQTEVFRRIPGLENARFARLGGIHRNTFLNSPTLLDDRMRLRSRPNIRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 348 QITGVEGYVESAAMGLLAG 366


>gi|239831772|ref|ZP_04680101.1| gid protein [Ochrobactrum intermedium LMG 3301]
 gi|239824039|gb|EEQ95607.1| gid protein [Ochrobactrum intermedium LMG 3301]
          Length = 495

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L  TL  K    L  AG
Sbjct: 321 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDATLRLKSRETLRFAG 380

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 381 QVTGCEGYVESSAIGLLAG 399


>gi|325924867|ref|ZP_08186301.1| flavin-dependent dehydrogenase [Xanthomonas perforans 91-118]
 gi|325544712|gb|EGD16061.1| flavin-dependent dehydrogenase [Xanthomonas perforans 91-118]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLQDVR 85

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D  L++ A    + ++E 
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVDAREQ 145

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 146 VCV---EQVAFDGEQPVLQA 162


>gi|78049746|ref|YP_365921.1| putative oxidoreductase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78038176|emb|CAJ25921.1| putative oxidoreductase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 460

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLQDVR 85

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D  L++ A    + ++E 
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVDAREQ 145

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E+ ++ +
Sbjct: 146 VCV---EQVAFDGEQPVLQA 162


>gi|167747019|ref|ZP_02419146.1| hypothetical protein ANACAC_01731 [Anaerostipes caccae DSM 14662]
 gi|167653979|gb|EDR98108.1| hypothetical protein ANACAC_01731 [Anaerostipes caccae DSM 14662]
          Length = 668

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           I +  +V+VIGGG AG EAA  AA++G ST LI  KT+ +G ++
Sbjct: 384 IKKPCNVVVIGGGTAGLEAACTAAEVGCSTVLI-EKTNQLGGLA 426


>gi|149013516|ref|ZP_01834148.1| hypothetical protein CGSSp19BS75_12383 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147762837|gb|EDK69789.1| hypothetical protein CGSSp19BS75_12383 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 486

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VR 60
           YDV+VIG G +G  AA  + +LG  T LI  K S IG +  N  +G     +      V 
Sbjct: 2   YDVVVIGAGSSGALAAIASGRLGLKTCLI-EKGSRIGGVPINTLMGSFANLYFDDSGRVN 60

Query: 61  EIDALDGLMGRVADAAGIQF----RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               +  L+ R+ +  G  F     ++NV     +  P      E+Y  ++  E+L++ N
Sbjct: 61  ASKIVGELIERIIEKGGTVFSSMEELMNVSDFYQITIPYQP---EVYE-SVLTEMLNESN 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM 144
           +D++       N E   I++IV  +N +
Sbjct: 117 VDIL------LNVE---INNIVFDNNKI 135


>gi|15789680|ref|NP_279504.1| hypothetical protein VNG0439C [Halobacterium sp. NRC-1]
 gi|169235394|ref|YP_001688594.1| geranylgeranyl hydrogenase-like protein [Halobacterium salinarum
          R1]
 gi|10580048|gb|AAG18984.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726460|emb|CAP13245.1| geranylgeranyl hydrogenase homolog [Halobacterium salinarum R1]
          Length = 456

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          M    YDV+V+G G AGC AAA  A  G    ++  K+ S  G ++C  A+ G
Sbjct: 1  MPAHEYDVVVVGAGTAGCYAAATVADAGYDVVVVERKSASEAGHIACGDALKG 53


>gi|146277212|ref|YP_001167371.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166989565|sp|A4WRQ2|TRMFO_RHOS5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145555453|gb|ABP70066.1| gid protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    R IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTSVFRMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           Q+ G  GY E+AA GL+AG  +A
Sbjct: 346 QVTGVEGYVESAAMGLLAGRMAA 368


>gi|70725228|ref|YP_252142.1| hypothetical protein SH0227 [Staphylococcus haemolyticus JCSC1435]
 gi|68445952|dbj|BAE03536.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 453

 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLV 59
           +++SYD+IVIG G  G  AA  AA+LG + A++   H      ++ C P+   L  G  +
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRAAQLGKNVAIVEKQHVGGVCLNVGCIPSKIFLEYGAKM 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-REILSQENLD 118
           R+I +        A+  GI+   +++     V+    + D+ +  +    R+ L Q N+D
Sbjct: 61  RDIHS--------ANNWGIKTNHIDIDVTSLVK----RKDQVVKTVTDDVRDALRQHNVD 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            I+GE       K      V  D ++     ++L TGT
Sbjct: 109 FIEGEAEVLEGLK------VQVDQAIYTAKDIILATGT 140


>gi|220928384|ref|YP_002505293.1| HI0933 family protein [Clostridium cellulolyticum H10]
 gi|219998712|gb|ACL75313.1| HI0933 family protein [Clostridium cellulolyticum H10]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN----PAIGGLGKGHLVRE 61
          YDV+VIG G AG  AA  AA++GA TALI  +  T+G    N    P +G + +G L  E
Sbjct: 18 YDVVVIGSGPAGICAAVSAARMGAKTALI-ERYGTLGGNLTNGAVAPILGSVSRGTLRDE 76

Query: 62 I 62
          +
Sbjct: 77 L 77


>gi|89070138|ref|ZP_01157467.1| gid protein [Oceanicola granulosus HTCC2516]
 gi|89044255|gb|EAR50401.1| gid protein [Oceanicola granulosus HTCC2516]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE+ +  R G      ++N P  L   +  K    +  AG
Sbjct: 289 GFQTKMKYGAQTEVFRMIPGLEQASFARLGGIHRNTFLNSPTLLDGEMRLKSRPNIRFAG 348

Query: 368 QINGTTGYEEAAAQGLVA 385
           Q+ G  GY E+AA GL+A
Sbjct: 349 QVTGVEGYVESAAMGLLA 366


>gi|226324664|ref|ZP_03800182.1| hypothetical protein COPCOM_02449 [Coprococcus comes ATCC 27758]
 gi|225207112|gb|EEG89466.1| hypothetical protein COPCOM_02449 [Coprococcus comes ATCC 27758]
          Length = 666

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 10/52 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K          P +GGL
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKK----------PELGGL 421


>gi|153009661|ref|YP_001370876.1| tRNA (uracil-5-)-methyltransferase Gid [Ochrobactrum anthropi ATCC
           49188]
 gi|166989562|sp|A6X1E3|TRMFO_OCHA4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|151561549|gb|ABS15047.1| gid protein [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L  TL  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDGTLRLKSRETLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|114767416|ref|ZP_01446218.1| glucose-inhibited division protein A [Pelagibaca bermudensis
           HTCC2601]
 gi|114540501|gb|EAU43580.1| glucose-inhibited division protein A [Roseovarius sp. HTCC2601]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGLE+    R G      ++N P  L   +  +    +  AG
Sbjct: 282 GFQTKMKYGAQTEVFRMIPGLEEAKFARLGGIHRNTFLNSPTLLDAQMRLRSKPNIRFAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSA 390
           QI G  GY E++A GL AG  +A
Sbjct: 342 QITGVEGYVESSAMGLAAGRMAA 364


>gi|83858667|ref|ZP_00952189.1| gid protein, hypothetical [Oceanicaulis alexandrii HTCC2633]
 gi|83853490|gb|EAP91342.1| gid protein, hypothetical [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  +  R G      +++ PK L   +  K    L  AG
Sbjct: 291 GFQTKMKYGAQTDVFKMIPGLENASFARLGGIHRNTFLHSPKLLDGVMRLKARPSLRFAG 350

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 351 QITGVEGYVESASMGLLAG 369


>gi|317471836|ref|ZP_07931171.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900609|gb|EFV22588.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           I +  +V+VIGGG AG EAA  AA++G ST LI  KT+ +G ++
Sbjct: 379 IKKPCNVVVIGGGTAGLEAACTAAEVGCSTVLI-EKTNQLGGLA 421


>gi|304391783|ref|ZP_07373725.1| tRNA:M(5)U-54 methyltransferase [Ahrensia sp. R2A130]
 gi|303296012|gb|EFL90370.1| tRNA:M(5)U-54 methyltransferase [Ahrensia sp. R2A130]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE     R G      Y++ P+ L  TL  +    +  AG
Sbjct: 289 GFQTKLKYGAQTEIFRLIPGLENAEFARLGGLHRNTYLDSPRLLDDTLRLRSRPEVRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A  GL+ G
Sbjct: 349 QITGCEGYVESATIGLMTG 367


>gi|207111728|ref|ZP_03245890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 39

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           Y NG+ST+LP ++Q + I +I GLE   I R GYAIE
Sbjct: 3   YINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIE 39


>gi|163794539|ref|ZP_02188510.1| Mercuric reductase MerA [alpha proteobacterium BAL199]
 gi|159180263|gb|EDP64786.1| Mercuric reductase MerA [alpha proteobacterium BAL199]
          Length = 475

 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          S+D+ V+G G AG  AA  AA LGA  ALI H   TIG    N  IG +    L+R ++A
Sbjct: 13 SFDLAVVGAGSAGFSAAITAADLGARVALIGH--GTIGGTCVN--IGCVPSKTLIRAVEA 68

Query: 65 LDG 67
          + G
Sbjct: 69 VRG 71


>gi|26006758|sp|O68141|TRMFO_RHOCA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|3128379|gb|AAC16231.1| gid protein [Rhodobacter capsulatus SB 1003]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE+ +  R G      ++N P  L   +  +    L  AG
Sbjct: 284 GFQTKMKYGAQTAVFKMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLRARPNLRFAG 343

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 344 QVTGVEGYVESAAMGLLAG 362


>gi|294626782|ref|ZP_06705375.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598898|gb|EFF43042.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLEDVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D  L++ A    + ++E 
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRFSHALDAKSDFAFQVPRAQFDHVLFQRARAMGVDAREQ 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E  ++ +
Sbjct: 134 VCV---EQVAFDGEHPVLQA 150


>gi|294665764|ref|ZP_06731036.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604459|gb|EFF47838.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLEDVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D  L++ A    + ++E 
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAMGVDAREQ 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E  ++ +
Sbjct: 134 VCV---EQVAFDGEHPVLQA 150


>gi|294677498|ref|YP_003578113.1| glucose-inhibited division protein A [Rhodobacter capsulatus SB
           1003]
 gi|294476318|gb|ADE85706.1| glucose-inhibited division protein A [Rhodobacter capsulatus SB
           1003]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE+ +  R G      ++N P  L   +  +    L  AG
Sbjct: 284 GFQTKMKYGAQTAVFKMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLRARPNLRFAG 343

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 344 QVTGVEGYVESAAMGLLAG 362


>gi|322369829|ref|ZP_08044391.1| geranylgeranyl reductase [Haladaptatus paucihalophilus DX253]
 gi|320550165|gb|EFW91817.1| geranylgeranyl reductase [Haladaptatus paucihalophilus DX253]
          Length = 455

 Score = 42.4 bits (98), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          ++  YD++V+G G +GC AAA  A+ G   A++  KT    G ++C  A+ G
Sbjct: 1  MSEQYDMVVVGAGTSGCYAAATVAREGYDVAVVERKTEEEAGHIACGDALKG 52


>gi|126729677|ref|ZP_01745490.1| glucose-inhibited division protein A [Sagittula stellata E-37]
 gi|126709796|gb|EBA08849.1| glucose-inhibited division protein A [Sagittula stellata E-37]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE+ +  R G      ++N P  L   +  +    +  AG
Sbjct: 288 GFQTKMKYGAQASVFKMIPGLEEASFARLGGIHRNTFLNSPTLLDAQMRLRSKPNIRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 348 QVTGVEGYVESAAMGLLAG 366



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++GGG AG EAA  AA +G S  L           H+T  +G M C+ +           
Sbjct: 9   IVGGGMAGSEAAWQAANMGVSVVLHEMRPQVKTFAHRTGNMGEMVCSNSFRSDDD----- 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +A+  L   +  A G+     +  + PA  G     DR+ +  A+ + +    N+ + 
Sbjct: 64  EQNAVGLLHWEMRTAEGLIISTAHRHRLPA--GGALAVDRDPFSEAVTKALTDHPNIAIS 121

Query: 121 QGEVAGFNTEKNII 134
             EV+   +E + I
Sbjct: 122 HEEVSELPSEGHWI 135


>gi|218512400|ref|ZP_03509240.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli 8C-3]
          Length = 155

 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +  K + I    
Sbjct: 7   YINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAE-RKGEAILLPP 65

Query: 404 TDSYIGVMIDDLT 416
             + +G ++  +T
Sbjct: 66  ATTALGSLLGHIT 78


>gi|257063754|ref|YP_003143426.1| tRNA:m(5)U-54 methyltransferase [Slackia heliotrinireducens DSM
           20476]
 gi|256791407|gb|ACV22077.1| tRNA:m(5)U-54 methyltransferase [Slackia heliotrinireducens DSM
           20476]
          Length = 452

 Score = 42.0 bits (97), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT---L 355
           G  T++ +P           Q +    IPGLE    +R G      +I    L      L
Sbjct: 283 GFQTNLTFPE----------QKRVFSMIPGLENAEFVRYGVMHRNTFIQAPGLVERSLRL 332

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           + +  + +F+AGQ++GT GY EA   GL+  +N     N ++      T ++
Sbjct: 333 KVETPAPVFVAGQLSGTEGYCEAIMSGLMCALNVYALLNGIEMPAMPETTAF 384


>gi|218282811|ref|ZP_03488969.1| hypothetical protein EUBIFOR_01555 [Eubacterium biforme DSM 3989]
 gi|218216340|gb|EEC89878.1| hypothetical protein EUBIFOR_01555 [Eubacterium biforme DSM 3989]
          Length = 435

 Score = 42.0 bits (97), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N  YDV+VIGGG AG  +A  A + GA + LI  +   +G +       G G  H   E
Sbjct: 15 MNNKYDVVVIGGGPAGLASAMAAKQNGAKSVLIIERDKELGGILNQCIHNGFGLHHFKEE 74

Query: 62 I 62
          +
Sbjct: 75 L 75


>gi|291540955|emb|CBL14066.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Roseburia
           intestinalis XB6B4]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K    G  S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAELGGLAS 423


>gi|254462428|ref|ZP_05075844.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679017|gb|EDZ43504.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    ++IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 289 GFQTKMRYGAQADVFKSIPGLENASFARLGGIHRNTFLNSPTLLDSQMRLKSKPHIRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 349 QITGVEGYVESASMGLLAG 367


>gi|240144475|ref|ZP_04743076.1| NADH:flavin oxidoreductase [Roseburia intestinalis L1-82]
 gi|257203509|gb|EEV01794.1| NADH:flavin oxidoreductase [Roseburia intestinalis L1-82]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K    G  S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAELGGLAS 423


>gi|126466350|ref|YP_001041459.1| geranylgeranyl reductase [Staphylothermus marinus F1]
 gi|126015173|gb|ABN70551.1| geranylgeranyl reductase [Staphylothermus marinus F1]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
          YDVIV+G G AG  AA V A  G + A+I  K  S IG  +C  AIG
Sbjct: 3  YDVIVVGAGVAGLNAAFVLASKGFNVAIIESKPRSRIGDKTCGDAIG 49


>gi|153953634|ref|YP_001394399.1| enoate reductase [Clostridium kluyveri DSM 555]
 gi|219854256|ref|YP_002471378.1| hypothetical protein CKR_0913 [Clostridium kluyveri NBRC 12016]
 gi|146346515|gb|EDK33051.1| Predicted enoate reductase [Clostridium kluyveri DSM 555]
 gi|219567980|dbj|BAH05964.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 10/54 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           + R  +V+VIGGG +G EAA  AA+LG +T L   K          P +GGL K
Sbjct: 379 VKRQTNVVVIGGGTSGLEAACTAAELGCNTFLFEKK----------PYLGGLAK 422


>gi|126700303|ref|YP_001089200.1| putative lipoprotein [Clostridium difficile 630]
 gi|255101857|ref|ZP_05330834.1| putative lipoprotein [Clostridium difficile QCD-63q42]
 gi|255307726|ref|ZP_05351897.1| putative lipoprotein [Clostridium difficile ATCC 43255]
 gi|115251740|emb|CAJ69575.1| putative lipoprotein [Clostridium difficile]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 171/424 (40%), Gaps = 63/424 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDAL 65
           V++IGGG AG  AA+ A + G    LI  K   +G      AI G G+ ++    EI+ L
Sbjct: 4   VVIIGGGPAGMIAASTACEKGYDVTLI-EKNHKLGK---KLAITGKGRCNITNACEIEEL 59

Query: 66  ------------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRL-AMQRE 110
                               D     F  L VK     RG R   ++D+    + A++R+
Sbjct: 60  IENVPTNGKFLYSAFYTFTNDDVISMFNNLGVKTKTE-RGKRVFPESDKAFDIVNALERQ 118

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF---LRGVIHIG-K 166
           + S++   ++  +V    ++ N I  +++ D   I+C +VV+ TG     L G    G K
Sbjct: 119 LKSKKVNILLNSKVEKIISKNNKIEKVILNDKKEIKCDSVVVATGGLSYPLTGSTGDGYK 178

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             I  G        SL    ++  F T  L+  +   ++ + +   K +K ++D   + F
Sbjct: 179 FAISQGHTIIDTKPSLIGIEVQESF-TKDLEKLSLRNVEIR-VFNSKQKKVYSDFGELEF 236

Query: 227 S-FMTDKITNRQIECGITRTNLETHRII------MENIKHSAIYSGDIKSY-GPRYCPSI 278
           + F  D    +   C +  T  E + I+      ++  K       D + Y   ++  ++
Sbjct: 237 TRFGLDGPIIKSASCRMKDTRKENYTILLDLKPALDEEKLDKRVQKDFQKYTNKKFEKAL 296

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE-KVNIIRP 337
           +D + +          L P  +N   + PN +   +  E +   +  +  L+  V   RP
Sbjct: 297 DDLLPK---------KLIPIIINLSEINPNTVVHQISREQRKNLVHLLKNLKFTVKRYRP 347

Query: 338 -------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY------EEAAAQGLV 384
                     ++ + IN      T+E+K + GLF AG++     Y      + A + G +
Sbjct: 348 IEEAIITSGGVKVNEINS----STMESKLVEGLFFAGEVIDIDAYTGGFNLQIAFSTGYL 403

Query: 385 AGIN 388
           AG N
Sbjct: 404 AGFN 407


>gi|332981309|ref|YP_004462750.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332698987|gb|AEE95928.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Mahella australiensis 50-1 BON]
          Length = 590

 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 23/144 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I R YD++++GGG +G  AA  AA+ G+ TA+I ++          P  GG     +   
Sbjct: 7   IERQYDIVIVGGGMSGICAAIAAARHGSKTAIIQNR----------PVFGGNASSEIRMH 56

Query: 62  IDALDGLMGRVADA--AGIQFRVL--NVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           I   D + G  +DA   GI   +L  N +  P       Q    ++   M  ++  Q+NL
Sbjct: 57  ICGAD-VHGSRSDARETGILEEILLENRRVNP-------QMSFSVFDTVMWEKVKFQDNL 108

Query: 118 DV-IQGEVAGFNTEKNIISSIVMQ 140
           D+ +   +    T  N I  I+ +
Sbjct: 109 DMYLNTHMTQVETTDNKIVKIIAE 132


>gi|85702776|ref|ZP_01033880.1| glucose-inhibited division protein A [Roseovarius sp. 217]
 gi|85671704|gb|EAQ26561.1| glucose-inhibited division protein A [Roseovarius sp. 217]
          Length = 452

 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE     R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKMIPGLENAQFARLGGIHRNTFLNSPTLLDAQMRLRSRPHIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 346 QITGVEGYVESAAMGLLAG 364


>gi|253578808|ref|ZP_04856079.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849751|gb|EES77710.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N++ +V+VIGGG AG EAA  AA++G +T L+  K  T+G ++
Sbjct: 380 VNKNCNVVVIGGGTAGLEAACTAAEVGCNTFLL-EKGETLGGLA 422


>gi|270295795|ref|ZP_06201995.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273199|gb|EFA19061.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 720

 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC--------NPAIG-GLGK 55
           SYDVIV GGG AG  AAA A++LG   ALI  +    G+ S         N  +G   G 
Sbjct: 277 SYDVIVTGGGIAGMCAAATASRLGCKVALINDRPVLGGNNSSEVRVHLGGNIGVGPNSGL 336

Query: 56  GHLVREI 62
           G ++RE 
Sbjct: 337 GRMIREF 343


>gi|312136785|ref|YP_004004122.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methanothermus fervidus DSM 2088]
 gi|311224504|gb|ADP77360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methanothermus fervidus DSM 2088]
          Length = 429

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          V+++GGG AGC AA VA+KLGA   LI    + +G   C  A G
Sbjct: 4  VVIVGGGWAGCTAAFVASKLGAEVTLIEKSDTLLG---CGLAAG 44


>gi|89054989|ref|YP_510440.1| tRNA (uracil-5-)-methyltransferase Gid [Jannaschia sp. CCS1]
 gi|122999436|sp|Q28PE7|TRMFO_JANSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|88864538|gb|ABD55415.1| gid protein [Jannaschia sp. CCS1]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q Q    IPGL++ +  R G      +IN P  L   +  +    +  AG
Sbjct: 288 GFQTKMTYGAQKQVFAMIPGLQEASFARLGGIHRNTFINSPTLLDDQMRLRSKPHIRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 348 QITGVEGYVESASMGLLAG 366



 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 16/132 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + ++  + +IGGG AG EAA  AA LG +  LI          H+T  +  M C+ +   
Sbjct: 1   MTQNTQLTIIGGGMAGSEAAWQAANLGVNVRLIEMRPKVETFAHRTGNLAEMVCSNSFRS 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
                   E +A+  L   +  A  +     +  K PA  G     DR+ +  A+  ++ 
Sbjct: 61  DDS-----EQNAVGLLHWEMRAANSVIMHTADSHKLPA--GGALAVDRDPFAEAVTAKLH 113

Query: 113 SQENLDVIQGEV 124
           +  N+++  GEV
Sbjct: 114 AHPNIEITYGEV 125


>gi|329850438|ref|ZP_08265283.1| tRNA:m5U-54 methyltransferase [Asticcacaulis biprosthecum C19]
 gi|328840753|gb|EGF90324.1| tRNA:m5U-54 methyltransferase [Asticcacaulis biprosthecum C19]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKI---SGLF 364
           G  T L    Q    R IPGLE     R G      +I +PK L   L  K +     + 
Sbjct: 291 GFQTKLKHGAQADVFRMIPGLENAQFARLGGLHRNTFIQSPKLLDRQLRLKALFPDKSVR 350

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKS 393
            AGQ+ G  GY E+AA GL+AG  +A ++
Sbjct: 351 FAGQLTGVEGYVESAAIGLLAGRFAAAQA 379


>gi|21244819|ref|NP_644401.1| hydroxylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110520|gb|AAM38937.1| hydroxylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLEDVR 73

Query: 61  EIDALDGLMGRVADAAGIQ-FR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            I  L        D+ G   FR    L+ K   A + PR Q D  L++ A    + ++E 
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVDAREQ 133

Query: 117 LDVIQGEVAGFNTEKNIISS 136
           + V   E   F+ E  ++ +
Sbjct: 134 VCV---EQVAFDGEHPVLQA 150


>gi|195151039|ref|XP_002016457.1| GL11586 [Drosophila persimilis]
 gi|194110304|gb|EDW32347.1| GL11586 [Drosophila persimilis]
          Length = 93

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 33 LITHKTSTIGSMSCNPAIGGLGKGH 57
          ++TH   TIG MSCNP+ GG+GK H
Sbjct: 1  MLTHNLETIGEMSCNPSFGGVGKSH 25


>gi|318087146|gb|ADV40165.1| putative dihydrolipoyl dehydrogenase mitochondrial precursor
           [Latrodectus hesperus]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVRE 61
           +D++VIG G  G  AA  AA+LG  TA +  K +T+G    ++ C P+   L   HL   
Sbjct: 41  FDLVVIGSGPGGYVAAIKAAQLGLKTACV-EKNATLGGTCLNVGCIPSKALLHNSHLYHA 99

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             AL  L  R  D  G++  +      P +   ++ A + L   A    +  Q  +    
Sbjct: 100 --ALHDLKNRGIDCDGVKLNL------PKMMEQKSTAVKSLT--AGIAHLFKQNKITHFN 149

Query: 122 GEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGT 156
           G   G  T  N ++SI    +S +I+C  +++ TG+
Sbjct: 150 GH--GKITGTNEVTSIKADGSSDIIKCKNILIATGS 183


>gi|260173064|ref|ZP_05759476.1| hypothetical protein BacD2_14428 [Bacteroides sp. D2]
 gi|315921341|ref|ZP_07917581.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695216|gb|EFS32051.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIVIGGG AGC AA  AA+ GA T LI
Sbjct: 43 VDDRWDVIVIGGGPAGCTAAISAAREGAKTLLI 75


>gi|295085242|emb|CBK66765.1| FAD binding domain. [Bacteroides xylanisolvens XB1A]
          Length = 624

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T LI  +T  +G M  +  +  +   +     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAAT-LIVEETEWLGGMLTSAGVSAVDGNY----- 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-----QENL 117
           D   GL G   +     +  L+  K   V          L+  ++  +I       ++NL
Sbjct: 77  DLPAGLFGEFREHLADYYGGLDSLKTGWVSAV-------LFEPSVGNKIFHEMVDVEKNL 129

Query: 118 DVIQ-GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            V     +     EK++ I+ I M+DN++ +    +L  GT L  +  +  +K   G
Sbjct: 130 KVWHNATLVKLEREKDVWIAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKYDVG 186


>gi|160884179|ref|ZP_02065182.1| hypothetical protein BACOVA_02156 [Bacteroides ovatus ATCC 8483]
 gi|156110521|gb|EDO12266.1| hypothetical protein BACOVA_02156 [Bacteroides ovatus ATCC 8483]
          Length = 463

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIVIGGG AGC AA  AA+ GA T LI
Sbjct: 43 VDDRWDVIVIGGGPAGCTAAISAAREGAKTLLI 75


>gi|297623441|ref|YP_003704875.1| glucose-inhibited division protein A [Truepera radiovictrix DSM
           17093]
 gi|297164621|gb|ADI14332.1| glucose-inhibited division protein A [Truepera radiovictrix DSM
           17093]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 36/210 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R +D++V+G G AG E A   A+ G    L+T    T+    CN      G G  +R  
Sbjct: 7   TRPHDLLVVGAGLAGSELALTCARAGLDVLLVTTSLDTV----CNL----FGDGASLRPP 58

Query: 63  DA--LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY--RLAMQRE----ILSQ 114
               L  L+  + +A   Q                 Q D  +Y    A+ R     + + 
Sbjct: 59  PGTVLAELVAGLLEAQEAQL----------------QPDGSVYVGAWALHRRAKWALETH 102

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             L ++Q  V+    E   +  +   +  + + RC  V L  G+FL   + +G+L   AG
Sbjct: 103 PKLHLLQSSVSALKLEAGRVVGVATWEGVDRLARC--VALCAGSFLGARLRVGELTEAAG 160

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           R+ +   + LF+          R +   PA
Sbjct: 161 RLSEMAYDELFSDLRARGVAFERTERAAPA 190


>gi|254486836|ref|ZP_05100041.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
 gi|214043705|gb|EEB84343.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
          Length = 1005

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 26/116 (22%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG EAA  AA  GA T ++  +T+  G  +  P  GGL +G  V   D +D
Sbjct: 170 DVLVIGGGVAGLEAARTAALSGA-TVILLEQTAHWGGRA--PVDGGLVEGASV--TDYID 224

Query: 67  GLMGRVADAAGIQFRVLNVKKG-----------------PAVRGPRTQADRELYRL 105
            L+  ++    +Q R   +  G                 P ++GPR      L+R+
Sbjct: 225 ALIAELSAMDNVQMRTRTMGAGVYDHGYVLGYERLKDHAPEIKGPR----HRLWRI 276


>gi|206603102|gb|EDZ39582.1| putative glucose-inhibited division protein A [Leptospirillum sp.
           Group II '5-way CG']
          Length = 427

 Score = 41.2 bits (95), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L PE  +       G  T L    Q +  R IPGLE+   +R G      +++ P  L
Sbjct: 237 VQLRPEDADESAFNLVGFQTRLRYPEQERIFRMIPGLEQARFLRHGSLHRNTFLDAPALL 296

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG--INSARKSN---KLDC-ICFSRTD 405
              L    + G++  GQI G  GY E+   G +    ++ A  S+     D  +     +
Sbjct: 297 KDDLTLSGLPGVYATGQILGVEGYTESVTMGFLTALVLDGAWASDTPWTFDAKMILPPAE 356

Query: 406 SYIGVMIDDLTSK--GVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           + +G ++  L+ +  G   P  +      + +  RP  A +R  P
Sbjct: 357 TAMGALLSGLSPRRSGAFAPVNL-----HFGLFPRPSGATSRRIP 396


>gi|310778329|ref|YP_003966662.1| gid protein [Ilyobacter polytropus DSM 2926]
 gi|309747652|gb|ADO82314.1| gid protein [Ilyobacter polytropus DSM 2926]
          Length = 436

 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           G  T L    Q +    IPGLE  + +R G      +IN  +L   TL  K    ++ AG
Sbjct: 280 GFQTNLKWGEQKRVFSMIPGLENADFVRYGVMHRNTFINSTKLLKDTLNLKSNENIYFAG 339

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G+ GY  A A G++A IN A R   K + +   R  S IG +I  +T +
Sbjct: 340 QITGSEGYVAAMATGMMAAINIANRLEGKKEFVLDDR--SAIGAIIKYITEE 389



 Score = 41.2 bits (95), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 25/131 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +V++IG G AG EAA   AK G    L           HK+   G + C+ ++G      
Sbjct: 4   EVVIIGAGLAGSEAAYQLAKRGIKVKLYEMRPLKNTEAHKSEKFGELVCSNSLGSNATSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD   +          PA  G     DRE +   +   + +
Sbjct: 64  ASGLMKEELRQLGSLLVEVADKNRV----------PA--GQALAVDREGFSKEITETLEN 111

Query: 114 QENLDVIQGEV 124
            EN+++I+ E+
Sbjct: 112 MENIEIIREEL 122


>gi|291525823|emb|CBK91410.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Eubacterium
           rectale DSM 17629]
 gi|291527449|emb|CBK93035.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Eubacterium
           rectale M104/1]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K    G  S
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAELGGLAS 423


>gi|238925193|ref|YP_002938710.1| NADH:flavin oxidoreductase [Eubacterium rectale ATCC 33656]
 gi|238876869|gb|ACR76576.1| NADH:flavin oxidoreductase [Eubacterium rectale ATCC 33656]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K    G  S
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAELGGLAS 423


>gi|225376088|ref|ZP_03753309.1| hypothetical protein ROSEINA2194_01725 [Roseburia inulinivorans DSM
           16841]
 gi|225212108|gb|EEG94462.1| hypothetical protein ROSEINA2194_01725 [Roseburia inulinivorans DSM
           16841]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K    G  S
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAELGGLAS 423


>gi|300856040|ref|YP_003781024.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
 gi|300436155|gb|ADK15922.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
          Length = 665

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA+LG ST L   K S +G ++
Sbjct: 379 VTKQTNVVVIGGGTAGLEAACTAAELGCSTFLF-EKKSYVGGLA 421


>gi|254718998|ref|ZP_05180809.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella sp. 83/13]
 gi|265983989|ref|ZP_06096724.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. 83/13]
 gi|306840115|ref|ZP_07472901.1| gid protein [Brucella sp. NF 2653]
 gi|264662581|gb|EEZ32842.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. 83/13]
 gi|306404843|gb|EFM61136.1| gid protein [Brucella sp. NF 2653]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|124516261|gb|EAY57769.1| putative glucose-inhibited division protein A [Leptospirillum
           rubarum]
          Length = 427

 Score = 41.2 bits (95), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L PE  +       G  T L    Q +  R IPGLE+   +R G      +++ P  L
Sbjct: 237 VQLRPEDADESAFNLVGFQTRLRYPEQERIFRMIPGLEQARFLRHGSLHRNTFLDAPALL 296

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG--INSARKSN---KLDC-ICFSRTD 405
              L    + G++  GQI G  GY E+   G +    ++ A  S+     D  +     +
Sbjct: 297 KDDLTLSGLPGVYATGQILGVEGYTESVTMGFLTALVLDGAWASDTPWTFDAKMILPPAE 356

Query: 406 SYIGVMIDDLTSK--GVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           + +G ++  L+ +  G   P  +      + +  RP  A +R  P
Sbjct: 357 TAMGALLSGLSPRRSGAFAPVNL-----HFGLFPRPSGATSRRIP 396


>gi|291548100|emb|CBL21208.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Ruminococcus
           sp. SR1/5]
          Length = 665

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N++ +V+VIGGG AG EAA  AA++G +T L+  K++ +G ++
Sbjct: 380 VNKNCNVVVIGGGTAGLEAACTAAEVGCNTFLL-EKSNELGGLA 422


>gi|237815326|ref|ZP_04594324.1| gid protein [Brucella abortus str. 2308 A]
 gi|297248244|ref|ZP_06931962.1| tRNA:m(5)U-54 methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|237790163|gb|EEP64373.1| gid protein [Brucella abortus str. 2308 A]
 gi|297175413|gb|EFH34760.1| tRNA:m(5)U-54 methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 305 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 364

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 365 QVTGCEGYVESSAIGLLAG 383


>gi|160890701|ref|ZP_02071704.1| hypothetical protein BACUNI_03146 [Bacteroides uniformis ATCC 8492]
 gi|317479769|ref|ZP_07938890.1| hypothetical protein HMPREF1007_02006 [Bacteroides sp. 4_1_36]
 gi|156859700|gb|EDO53131.1| hypothetical protein BACUNI_03146 [Bacteroides uniformis ATCC 8492]
 gi|316904062|gb|EFV25895.1| hypothetical protein HMPREF1007_02006 [Bacteroides sp. 4_1_36]
          Length = 626

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC--------NPAIG-GLGK 55
           SYDVIV GGG AG  AAA A++LG   ALI  +    G+ S         N  +G   G 
Sbjct: 183 SYDVIVTGGGIAGMCAAATASRLGCKVALINDRPVLGGNNSSEVRVHLGGNIGVGPNSGL 242

Query: 56  GHLVREI 62
           G ++RE 
Sbjct: 243 GRMIREF 249


>gi|17987356|ref|NP_539990.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 1
           str. 16M]
 gi|225627384|ref|ZP_03785421.1| gid protein [Brucella ceti str. Cudo]
 gi|17983041|gb|AAL52254.1| glucose inhibited division protein a [Brucella melitensis bv. 1
           str. 16M]
 gi|225617389|gb|EEH14434.1| gid protein [Brucella ceti str. Cudo]
 gi|326408915|gb|ADZ65980.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis M28]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 305 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 364

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 365 QVTGCEGYVESSAIGLLAG 383


>gi|330684440|gb|EGG96164.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU121]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 31/160 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +YD++VIG G  G  AA  AA+LG S A++   H   T  ++ C P+   L  G  V +I
Sbjct: 4   NYDLVVIGAGPGGYVAAIRAAQLGKSVAIVEKQHVGGTCLNVGCIPSKTLLEFGSQVHQI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVR---GPRTQADRELYRLAMQREILSQENLDV 119
            A + L G   D   I +  L   K   V    G  TQ             +L + N+++
Sbjct: 64  HAANDL-GITTDHLNIDYSCLFEHKNNIVHTLTGGVTQ-------------LLKKNNVEL 109

Query: 120 IQGEVA---GFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           IQGE     G   E N            ++   ++L TG+
Sbjct: 110 IQGEAVVKDGLTIEVN---------QQSLKAKDIILATGS 140


>gi|296108998|ref|YP_003615947.1| geranylgeranyl reductase [Methanocaldococcus infernus ME]
 gi|295433812|gb|ADG12983.1| geranylgeranyl reductase [Methanocaldococcus infernus ME]
          Length = 391

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGL 53
          +  SYD+IV+G G  G  +A  ++KLGA T L+  K+  IG  + C  AI GL
Sbjct: 4  LKESYDIIVVGAGPGGSCSAYASSKLGAKT-LLVEKSQEIGEPVRCAEAIPGL 55


>gi|260654468|ref|ZP_05859958.1| pyridine nucleotide-disulphide oxidoreductase [Jonquetella anthropi
           E3_33 E1]
 gi|260630745|gb|EEX48939.1| pyridine nucleotide-disulphide oxidoreductase [Jonquetella anthropi
           E3_33 E1]
          Length = 537

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPA--------- 49
           S+DVIVIGGG AG  AA  AA++GAS  L+        K    G   CN A         
Sbjct: 3   SFDVIVIGGGPAGMMAALRAAQMGASVLLLEKNDELGRKLGLTGRGRCNFAHDEPDAAVL 62

Query: 50  IGGLGKGHLVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             G GKG    E    + GL   VA  A    R +  ++G  +  P+   D      A++
Sbjct: 63  AQGYGKGAAFMEQALREFGLNETVAFFASCGVRAVR-ERGKRLY-PQMGQDSSAVTAALR 120

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE+ ++  L +   EV G +     I  ++ +    I     VL TG
Sbjct: 121 RELHARRVLVLSSTEVKGLDASGGKIRRVITRQGE-IDGRAFVLATG 166


>gi|256159616|ref|ZP_05457378.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M490/95/1]
 gi|256254896|ref|ZP_05460432.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti B1/94]
 gi|261222079|ref|ZP_05936360.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti B1/94]
 gi|265998044|ref|ZP_06110601.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M490/95/1]
 gi|260920663|gb|EEX87316.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti B1/94]
 gi|262552512|gb|EEZ08502.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M490/95/1]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|256113441|ref|ZP_05454282.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 3
           str. Ether]
 gi|265994830|ref|ZP_06107387.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 3 str. Ether]
 gi|262765943|gb|EEZ11732.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 3 str. Ether]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|163843166|ref|YP_001627570.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis ATCC 23445]
 gi|189040804|sp|B0CLM0|TRMFO_BRUSI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|163673889|gb|ABY38000.1| gid protein [Brucella suis ATCC 23445]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|84516180|ref|ZP_01003540.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
 gi|84509876|gb|EAQ06333.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q      IPGLE     R G      +IN P  L   +  +    +  AG
Sbjct: 288 GFQTKMKYGAQKTVFAMIPGLETAEFARLGGIHRNTFINSPSLLDDQMRLRSRPNIRFAG 347

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 348 QITGVEGYVESAAMGLLAG 366


>gi|256369322|ref|YP_003106830.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
 gi|255999482|gb|ACU47881.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|62289839|ref|YP_221632.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 1 str.
           9-941]
 gi|82699764|ref|YP_414338.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis biovar
           Abortus 2308]
 gi|189024080|ref|YP_001934848.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus S19]
 gi|254689144|ref|ZP_05152398.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 6 str.
           870]
 gi|254697278|ref|ZP_05159106.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730177|ref|ZP_05188755.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 4 str.
           292]
 gi|256257394|ref|ZP_05462930.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 9 str.
           C68]
 gi|260545414|ref|ZP_05821155.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus NCTC 8038]
 gi|260754644|ref|ZP_05866992.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 6 str. 870]
 gi|260757867|ref|ZP_05870215.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 4 str. 292]
 gi|260761690|ref|ZP_05874033.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883670|ref|ZP_05895284.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus bv. 9 str. C68]
 gi|81170597|sp|Q57DL3|TRMFO_BRUAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123546680|sp|Q2YNL7|TRMFO_BRUA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|62195971|gb|AAX74271.1| gid protein, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82615865|emb|CAJ10869.1| Pyridine nucleotide-disulphide oxidoreductase, class
           I:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:Glucose-in [Brucella melitensis biovar
           Abortus 2308]
 gi|189019652|gb|ACD72374.1| glucose-inhibited division protein A [Brucella abortus S19]
 gi|260096821|gb|EEW80696.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus NCTC 8038]
 gi|260668185|gb|EEX55125.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 4 str. 292]
 gi|260672122|gb|EEX58943.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674752|gb|EEX61573.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 6 str. 870]
 gi|260873198|gb|EEX80267.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus bv. 9 str. C68]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|306840388|ref|ZP_07473153.1| gid protein [Brucella sp. BO2]
 gi|306289626|gb|EFM60830.1| gid protein [Brucella sp. BO2]
          Length = 433

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 260 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 319

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 320 QVTGCEGYVESSAIGLLAG 338


>gi|297526968|ref|YP_003668992.1| geranylgeranyl reductase [Staphylothermus hellenicus DSM 12710]
 gi|297255884|gb|ADI32093.1| geranylgeranyl reductase [Staphylothermus hellenicus DSM 12710]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
          YDVIV+G G AG  AA V A  G   A++  K  S IG  +C  AIG
Sbjct: 3  YDVIVVGAGVAGLNAAFVLASRGFKVAIVESKPRSRIGDKTCGDAIG 49


>gi|306843793|ref|ZP_07476391.1| gid protein [Brucella sp. BO1]
 gi|306275871|gb|EFM57587.1| gid protein [Brucella sp. BO1]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|23501780|ref|NP_697907.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis 1330]
 gi|148560039|ref|YP_001258873.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ovis ATCC 25840]
 gi|225852407|ref|YP_002732640.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis ATCC
           23457]
 gi|254693628|ref|ZP_05155456.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 3 str.
           Tulya]
 gi|254701658|ref|ZP_05163486.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis bv. 5 str.
           513]
 gi|254706896|ref|ZP_05168724.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           M163/99/10]
 gi|254709996|ref|ZP_05171807.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           B2/94]
 gi|254713997|ref|ZP_05175808.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M644/93/1]
 gi|254716944|ref|ZP_05178755.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M13/05/1]
 gi|256031490|ref|ZP_05445104.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           M292/94/1]
 gi|256044568|ref|ZP_05447472.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256061001|ref|ZP_05451158.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella neotomae 5K33]
 gi|256264096|ref|ZP_05466628.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 2 str. 63/9]
 gi|260168624|ref|ZP_05755435.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella sp. F5/99]
 gi|260563920|ref|ZP_05834406.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. 16M]
 gi|261213894|ref|ZP_05928175.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 3 str. Tulya]
 gi|261218749|ref|ZP_05933030.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M13/05/1]
 gi|261314359|ref|ZP_05953556.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M163/99/10]
 gi|261317545|ref|ZP_05956742.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis B2/94]
 gi|261321752|ref|ZP_05960949.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M644/93/1]
 gi|261325001|ref|ZP_05964198.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella neotomae 5K33]
 gi|261752212|ref|ZP_05995921.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 5 str. 513]
 gi|261758098|ref|ZP_06001807.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. F5/99]
 gi|265988579|ref|ZP_06101136.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M292/94/1]
 gi|265990993|ref|ZP_06103550.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|294852250|ref|ZP_06792923.1| tRNA:m(5)U-54 methyltransferase [Brucella sp. NVSL 07-0026]
 gi|54037183|sp|P64233|TRMFO_BRUSU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54041086|sp|P64232|TRMFO_BRUME RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989560|sp|A5VQ76|TRMFO_BRUO2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|23347710|gb|AAN29822.1| gid protein, putative [Brucella suis 1330]
 gi|148371296|gb|ABQ61275.1| tRNA:M(5)U-54 methyltransferase [Brucella ovis ATCC 25840]
 gi|225640772|gb|ACO00686.1| gid protein [Brucella melitensis ATCC 23457]
 gi|260153936|gb|EEW89028.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. 16M]
 gi|260915501|gb|EEX82362.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260923838|gb|EEX90406.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M13/05/1]
 gi|261294442|gb|EEX97938.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M644/93/1]
 gi|261296768|gb|EEY00265.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis B2/94]
 gi|261300981|gb|EEY04478.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella neotomae 5K33]
 gi|261303385|gb|EEY06882.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M163/99/10]
 gi|261738082|gb|EEY26078.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. F5/99]
 gi|261741965|gb|EEY29891.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 5 str. 513]
 gi|263001777|gb|EEZ14352.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094298|gb|EEZ18159.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 2 str. 63/9]
 gi|264660776|gb|EEZ31037.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M292/94/1]
 gi|294820839|gb|EFG37838.1| tRNA:m(5)U-54 methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|313126581|ref|YP_004036851.1| 2,3-di-o-geranylgeranylglyceryl phosphate reductase
          [Halogeometricum borinquense DSM 11551]
 gi|312292946|gb|ADQ67406.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Halogeometricum borinquense DSM 11551]
          Length = 457

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGG 52
            YDV+V+G G +GC AAA  A+ G    ++  KT+   G ++C  A+ G
Sbjct: 5  HEYDVVVVGAGTSGCYAAATIAREGLDVVIVERKTADEAGHIACGDALKG 54


>gi|260576783|ref|ZP_05844768.1| gid protein [Rhodobacter sp. SW2]
 gi|259021035|gb|EEW24346.1| gid protein [Rhodobacter sp. SW2]
          Length = 446

 Score = 40.8 bits (94), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGL+     R G      ++N P  L   +  K    L  AG
Sbjct: 289 GFQTKMKYGAQTTVFKMIPGLQDARFARLGGIHRNTFLNSPTLLDNRMRLKSRPNLRFAG 348

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA GL+AG
Sbjct: 349 QITGVEGYVESAAMGLLAG 367


>gi|161618854|ref|YP_001592741.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella canis ATCC 23365]
 gi|254704202|ref|ZP_05166030.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis bv. 3 str.
           686]
 gi|260566549|ref|ZP_05837019.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 4 str. 40]
 gi|261754871|ref|ZP_05998580.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 3 str. 686]
 gi|189040803|sp|A9MAR7|TRMFO_BRUC2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161335665|gb|ABX61970.1| gid protein [Brucella canis ATCC 23365]
 gi|260156067|gb|EEW91147.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 4 str. 40]
 gi|261744624|gb|EEY32550.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 3 str. 686]
          Length = 466

 Score = 40.8 bits (94), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|197301496|ref|ZP_03166575.1| hypothetical protein RUMLAC_00228 [Ruminococcus lactaris ATCC
           29176]
 gi|197299456|gb|EDY33977.1| hypothetical protein RUMLAC_00228 [Ruminococcus lactaris ATCC
           29176]
          Length = 666

 Score = 40.8 bits (94), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 10/52 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +N+  +V+VIGGG AG EAA  AA++G +T L+  K          P +GGL
Sbjct: 380 VNKPCNVVVIGGGTAGMEAACTAAEVGCTTFLLEKK----------PYLGGL 421


>gi|293400586|ref|ZP_06644731.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305612|gb|EFE46856.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 664

 Score = 40.8 bits (94), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G +T LI  K S +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLI-EKESQLGGLS 421


>gi|254976282|ref|ZP_05272754.1| putative lipoprotein [Clostridium difficile QCD-66c26]
 gi|255093668|ref|ZP_05323146.1| putative lipoprotein [Clostridium difficile CIP 107932]
 gi|255315417|ref|ZP_05357000.1| putative lipoprotein [Clostridium difficile QCD-76w55]
 gi|255518082|ref|ZP_05385758.1| putative lipoprotein [Clostridium difficile QCD-97b34]
 gi|255651199|ref|ZP_05398101.1| putative lipoprotein [Clostridium difficile QCD-37x79]
 gi|306521046|ref|ZP_07407393.1| putative lipoprotein [Clostridium difficile QCD-32g58]
          Length = 408

 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 22/165 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDAL 65
           V++IGGG AG  AA+ A + G    LI  K   +G      AI G G+ ++    EI+ L
Sbjct: 4   VVIIGGGPAGMIAASTACEKGYDVTLI-EKNHKLGK---KLAITGKGRCNITNACEIEEL 59

Query: 66  ------------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRL-AMQRE 110
                               D     F  L VK     RG R   ++D+    + A++R+
Sbjct: 60  IENVPTNGKFLYSAFYTFTNDDVISMFNNLGVKTKTE-RGKRVFPESDKAFDIVNALERQ 118

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           + S++   ++  +V    ++ N I  +++ D   I+C +VV+ TG
Sbjct: 119 LKSKKVNILLNSKVEKIISKNNKIEKVILNDKKEIKCDSVVVATG 163


>gi|332558056|ref|ZP_08412378.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           WS8N]
 gi|332275768|gb|EGJ21083.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           WS8N]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 346 QVTGVEGYVESAAMGLLAG 364


>gi|315301588|ref|ZP_07872695.1| NADH oxidase [Listeria ivanovii FSL F6-596]
 gi|313630035|gb|EFR98061.1| NADH oxidase [Listeria ivanovii FSL F6-596]
          Length = 532

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G  S
Sbjct: 248 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGGLAS 291


>gi|207111865|ref|ZP_03246027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 35

 Score = 40.8 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           F E+  HQ+FLEP+ ++    Y NG+ST+LP ++Q
Sbjct: 1   FSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQ 35


>gi|126462054|ref|YP_001043168.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166989564|sp|A3PJ80|TRMFO_RHOS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|126103718|gb|ABN76396.1| gid protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 346 QVTGVEGYVESAAMGLLAG 364


>gi|210610031|ref|ZP_03288210.1| hypothetical protein CLONEX_00396 [Clostridium nexile DSM 1787]
 gi|210152642|gb|EEA83648.1| hypothetical protein CLONEX_00396 [Clostridium nexile DSM 1787]
          Length = 667

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + +S +V+VIGGG AG EAA  AA++G +T LI  K +  G
Sbjct: 380 VKKSCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKANLGG 420


>gi|163747154|ref|ZP_02154510.1| tRNA (uracil-5-)-methyltransferase Gid [Oceanibulbus indolifex
           HEL-45]
 gi|161379715|gb|EDQ04128.1| tRNA (uracil-5-)-methyltransferase Gid [Oceanibulbus indolifex
           HEL-45]
          Length = 460

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE     R G      +IN P  +   +  +    +  AG
Sbjct: 300 GFQTKMKYGAQTDVFKRIPGLENARFARLGGIHRNSFINSPTLIDDQMRLRSRPNIRFAG 359

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+AA G++AG
Sbjct: 360 QITGVEGYVESAAMGMLAG 378


>gi|77463182|ref|YP_352686.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           2.4.1]
 gi|123592145|sp|Q3J349|TRMFO_RHOS4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77387600|gb|ABA78785.1| Glucose-inhibited division protein A [Rhodobacter sphaeroides
           2.4.1]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 346 QVTGVEGYVESAAMGLLAG 364


>gi|170699923|ref|ZP_02890952.1| YD repeat protein [Burkholderia ambifaria IOP40-10]
 gi|170135187|gb|EDT03486.1| YD repeat protein [Burkholderia ambifaria IOP40-10]
          Length = 1412

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 171  AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL--DGKTIIWDKTEKQFADERLIPFSF 228
            AG+  D  +   +N+F  +D D GR     P  L   G    +    +Q+ D    P+ +
Sbjct: 1233 AGQYADESTGLHYNTFRFYDPDVGRFINQDPIGLYGGGNLYAYGPNSQQWTD----PWGW 1288

Query: 229  MTDKITNRQIECGITR-TNLETHRIIMENIKHSAIYSGDIKSYG 271
             + K++N   + GITR  N   H I+ +  K +A     +  YG
Sbjct: 1289 CSVKLSNNMEKSGITRPANSAAHHIVGDTSKQAAPARAILSKYG 1332


>gi|164686727|ref|ZP_02210755.1| hypothetical protein CLOBAR_00322 [Clostridium bartlettii DSM
           16795]
 gi|164604117|gb|EDQ97582.1| hypothetical protein CLOBAR_00322 [Clostridium bartlettii DSM
           16795]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 323 IRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQING-TTGYE 376
           +R +PG E   I+ P     G +I Y  ++P++ +  +  + +S LF+ G+ +G   G+ 
Sbjct: 275 LRKVPGCENAMIVDPYAGGKGNSIRYMAVSPRDNY--MRAQGMSNLFVGGEKSGFYVGHT 332

Query: 377 EAAAQGLVAGINSARKSNKLD 397
           EA   G +AG N+AR    +D
Sbjct: 333 EAICTGSLAGHNAARFCAGVD 353


>gi|326538632|gb|ADZ86847.1| gid protein [Brucella melitensis M5-90]
          Length = 517

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q    + IPGLE     R G      Y+N P  L   L  K    L  AG
Sbjct: 293 GFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAG 352

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E++A GL+AG
Sbjct: 353 QVTGCEGYVESSAIGLLAG 371


>gi|315281072|ref|ZP_07869789.1| NADH oxidase [Listeria marthii FSL S4-120]
 gi|313615281|gb|EFR88709.1| NADH oxidase [Listeria marthii FSL S4-120]
          Length = 664

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|255026374|ref|ZP_05298360.1| hypothetical protein LmonocytFSL_08600 [Listeria monocytogenes FSL
           J2-003]
          Length = 469

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 185 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 225


>gi|251779942|ref|ZP_04822862.1| NADH oxidase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084257|gb|EES50147.1| NADH oxidase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 662

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           I +  +V+VIGGG AG EAA  AA++G +T LI  K+
Sbjct: 380 IKKQTNVVVIGGGTAGLEAACTAAEVGCTTFLIEQKS 416


>gi|221639039|ref|YP_002525301.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           KD131]
 gi|259547958|sp|B9KRK8|TRMFO_RHOSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221159820|gb|ACM00800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Rhodobacter sphaeroides KD131]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           Q+ G  GY E+AA GL+AG
Sbjct: 346 QVTGVEGYVESAAMGLLAG 364


>gi|116871880|ref|YP_848661.1| NADH:flavin oxidoreductase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740758|emb|CAK19878.1| NADH:flavin oxidoreductase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 664

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|16799567|ref|NP_469835.1| hypothetical protein lin0492 [Listeria innocua Clip11262]
 gi|16412932|emb|CAC95724.1| lin0492 [Listeria innocua Clip11262]
          Length = 664

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|290894364|ref|ZP_06557328.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556071|gb|EFD89621.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANKQTGG 420


>gi|47094715|ref|ZP_00232330.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 1/2a F6854]
 gi|254900285|ref|ZP_05260209.1| hypothetical protein LmonJ_10740 [Listeria monocytogenes J0161]
 gi|254911161|ref|ZP_05261173.1| NADH:flavin oxidoreductase [Listeria monocytogenes J2818]
 gi|254935489|ref|ZP_05267186.1| NADH:flavin oxidoreductase [Listeria monocytogenes F6900]
 gi|47016855|gb|EAL07773.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608066|gb|EEW20674.1| NADH:flavin oxidoreductase [Listeria monocytogenes F6900]
 gi|293589088|gb|EFF97422.1| NADH:flavin oxidoreductase [Listeria monocytogenes J2818]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|254830526|ref|ZP_05235181.1| hypothetical protein Lmon1_04157 [Listeria monocytogenes 10403S]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|16802532|ref|NP_464017.1| hypothetical protein lmo0489 [Listeria monocytogenes EGD-e]
 gi|224502210|ref|ZP_03670517.1| hypothetical protein LmonFR_06767 [Listeria monocytogenes FSL
           R2-561]
 gi|284800764|ref|YP_003412629.1| hypothetical protein LM5578_0512 [Listeria monocytogenes 08-5578]
 gi|284993950|ref|YP_003415718.1| hypothetical protein LM5923_0511 [Listeria monocytogenes 08-5923]
 gi|16409865|emb|CAC98568.1| lmo0489 [Listeria monocytogenes EGD-e]
 gi|284056326|gb|ADB67267.1| hypothetical protein LM5578_0512 [Listeria monocytogenes 08-5578]
 gi|284059417|gb|ADB70356.1| hypothetical protein LM5923_0511 [Listeria monocytogenes 08-5923]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|254829416|ref|ZP_05234103.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N3-165]
 gi|258601830|gb|EEW15155.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N3-165]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEASEQTGG 420


>gi|224500415|ref|ZP_03668764.1| hypothetical protein LmonF1_12414 [Listeria monocytogenes Finland
           1988]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|254824237|ref|ZP_05229238.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-194]
 gi|293593470|gb|EFG01231.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-194]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEASEQTGG 420


>gi|269792954|ref|YP_003317858.1| gid protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100589|gb|ACZ19576.1| gid protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 444

 Score = 40.4 bits (93), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLET--KKISGLFL 365
           G  T L    Q +  R IP L     +R G      Y+  PK L   L         LFL
Sbjct: 279 GFQTNLLWGEQERVFRMIPALRDAEFVRKGVMHRNLYVCAPKVLDGYLRPLGAHRRDLFL 338

Query: 366 AGQINGTTGYEEAAAQGLVAGI 387
           AGQI G  GY E+AA GL A +
Sbjct: 339 AGQITGVEGYLESAAMGLCAAM 360



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 33/156 (21%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----- 51
           +DV VIGGG AG EAA   A++G S  L           H+T  +G + C+ ++G     
Sbjct: 3   FDVEVIGGGLAGVEAAFRLARMGFSVGLYEMRPERRSPAHRTHLLGELVCSNSLGADQET 62

Query: 52  ---GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
              G+ K  L R        +G    A+  + RV      PA R      DRE +   + 
Sbjct: 63  SPAGILKAELRR--------LGSPVMASADRNRV------PAGRA--LAVDREGFARDLT 106

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM 144
             + S  N+ V++ EV    T   I+++  + +  M
Sbjct: 107 DMVSSLPNVTVVRREVTSIPTGPCILATGPLTEGEM 142


>gi|217965422|ref|YP_002351100.1| NADH oxidase [Listeria monocytogenes HCC23]
 gi|217334692|gb|ACK40486.1| NADH oxidase [Listeria monocytogenes HCC23]
 gi|307570022|emb|CAR83201.1| NADH:flavin oxidoreductase [Listeria monocytogenes L99]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEASEQTGG 420


>gi|261417251|ref|YP_003250934.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373707|gb|ACX76452.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327075|gb|ADL26276.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 443

 Score = 40.4 bits (93), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLE-------TKKI 360
           G  T L    Q +    +P L      R G      +I +PK L  TL         K I
Sbjct: 280 GFQTRLKWGTQKEIFTMVPALRNAKFARLGCMHRNTFIESPKFLDKTLRLRPELDCAKDI 339

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
              + AGQI G+ GY EA A G  A  N A+
Sbjct: 340 PPTWFAGQITGSEGYTEAVATGWYAAWNMAQ 370


>gi|149203848|ref|ZP_01880817.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
 gi|149142965|gb|EDM31007.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGLE     R G      ++N P  L   +  +    +  +G
Sbjct: 292 GFQTKMKYGAQATVFKMIPGLENAQFARLGGIHRNTFLNSPTLLDAQMRLRSRPHIRFSG 351

Query: 368 QINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMIDDLT 416
           QI G  GY E+AA GL+AG  +A +     L  +     DS +G +I  +T
Sbjct: 352 QITGVEGYVESAAMGLLAGRLAAAEILGQSLPPVP---QDSAMGALIHHIT 399


>gi|46906735|ref|YP_013124.1| NADH:flavin oxidoreductase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093114|ref|ZP_00230890.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 4b H7858]
 gi|226223115|ref|YP_002757222.1| NADH:flavin oxidoreductase [Listeria monocytogenes Clip81459]
 gi|254853858|ref|ZP_05243206.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL R2-503]
 gi|254933244|ref|ZP_05266603.1| NADH:flavin oxidoreductase [Listeria monocytogenes HPB2262]
 gi|254992916|ref|ZP_05275106.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J2-064]
 gi|255522130|ref|ZP_05389367.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-175]
 gi|300765140|ref|ZP_07075126.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N1-017]
 gi|46880000|gb|AAT03301.1| NADH:flavin oxidoreductase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018487|gb|EAL09244.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 4b H7858]
 gi|225875577|emb|CAS04280.1| Putative NADH:flavin oxidoreductase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607243|gb|EEW19851.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL R2-503]
 gi|293584804|gb|EFF96836.1| NADH:flavin oxidoreductase [Listeria monocytogenes HPB2262]
 gi|300514111|gb|EFK41172.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N1-017]
 gi|328467559|gb|EGF38621.1| NADH:flavin oxidoreductase [Listeria monocytogenes 1816]
 gi|332310912|gb|EGJ24007.1| NADH oxidase [Listeria monocytogenes str. Scott A]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEASEQTGG 420


>gi|255022417|ref|ZP_05294403.1| hypothetical protein LmonocyFSL_00780 [Listeria monocytogenes FSL
           J1-208]
          Length = 554

 Score = 40.4 bits (93), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 270 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 310


>gi|317471857|ref|ZP_07931192.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900630|gb|EFV22609.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T L+  K   +G +S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLL-EKEDHLGGLS 422


>gi|239617564|ref|YP_002940886.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
 gi|239506395|gb|ACR79882.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+++GGG AG  AA    + G  T LI H  STIG +S    +    +  L  E   +D
Sbjct: 6  DVVIVGGGIAGVHAAIACGRAGLKTTLIEHG-STIGGLSTMGLVNPFMRYWLGSE-KLID 63

Query: 67 GLMGRVAD 74
          G+ G + D
Sbjct: 64 GIFGELLD 71


>gi|167747041|ref|ZP_02419168.1| hypothetical protein ANACAC_01753 [Anaerostipes caccae DSM 14662]
 gi|167654001|gb|EDR98130.1| hypothetical protein ANACAC_01753 [Anaerostipes caccae DSM 14662]
          Length = 665

 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T L+  K   +G +S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLL-EKEDHLGGLS 422


>gi|192291542|ref|YP_001992147.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           TIE-1]
 gi|192285291|gb|ACF01672.1| gid protein [Rhodopseudomonas palustris TIE-1]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L  +L  +    L  AG
Sbjct: 296 GFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDESLRLRASPRLRFAG 355

Query: 368 QINGTTGYEEAAA 380
           Q+ G  GY E+A+
Sbjct: 356 QMTGCEGYVESAS 368


>gi|39935894|ref|NP_948170.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           CGA009]
 gi|50400230|sp|Q6N5Z1|TRMFO_RHOPA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39649748|emb|CAE28269.1| putative glucose-inhibited division protein (gid) [Rhodopseudomonas
           palustris CGA009]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  RTIPGLE     R G      ++N PK L  +L  +    L  AG
Sbjct: 296 GFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDESLRLRASPRLRFAG 355

Query: 368 QINGTTGYEEAAA 380
           Q+ G  GY E+A+
Sbjct: 356 QMTGCEGYVESAS 368


>gi|313639411|gb|EFS04280.1| NADH oxidase [Listeria seeligeri FSL S4-171]
          Length = 589

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 305 VTRPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 345


>gi|325106983|ref|YP_004268051.1| glucose-inhibited division protein A [Planctomyces brasiliensis DSM
           5305]
 gi|324967251|gb|ADY58029.1| glucose-inhibited division protein A [Planctomyces brasiliensis DSM
           5305]
          Length = 753

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-EIDA 64
           YD++V+GGG+AG  +A  AA++G   ALI ++    G+ S    +  +  GH+ R E   
Sbjct: 190 YDLVVVGGGYAGMGSAIAAARMGIRVALIQNRPVLGGNGSSEVRVWAM--GHIRRGEYPH 247

Query: 65  LDGLMGRVADAA 76
           +  ++   AD+A
Sbjct: 248 IGEIVAEFADSA 259


>gi|169836599|ref|ZP_02869787.1| hypothetical protein cdivTM_05765 [candidate division TM7
          single-cell isolate TM7a]
          Length = 33

 Score = 40.0 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLG 28
          R+YDVIV+G GHAG EAA  +A+LG
Sbjct: 2  RNYDVIVVGAGHAGNEAALASARLG 26


>gi|163731891|ref|ZP_02139338.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter litoralis Och
           149]
 gi|161395345|gb|EDQ19667.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter litoralis Och
           149]
          Length = 450

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    ++IPGL+  +  R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQASVFKSIPGLKNASFARLGGIHRNTFLNAPTLLDAQMRLRSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+A+ GL+AG
Sbjct: 346 QITGVEGYVESASMGLLAG 364


>gi|312879575|ref|ZP_07739375.1| gid protein [Aminomonas paucivorans DSM 12260]
 gi|310782866|gb|EFQ23264.1| gid protein [Aminomonas paucivorans DSM 12260]
          Length = 440

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IP LE+   +R G      ++  P+ L   L  +    LFLAG
Sbjct: 277 GFQTNLLWGEQDRIFRLIPALERAEFVRKGVMHRNLFVCAPRVLDGFLRPRGREDLFLAG 336

Query: 368 QINGTTGYEEAAAQG 382
           Q+ G  GY E+ A G
Sbjct: 337 QVTGVEGYLESTAMG 351


>gi|161523106|ref|YP_001586035.1| YD repeat-containing protein [Burkholderia multivorans ATCC 17616]
 gi|189348071|ref|YP_001941267.1| Rhs family protein [Burkholderia multivorans ATCC 17616]
 gi|160346659|gb|ABX19743.1| YD repeat protein [Burkholderia multivorans ATCC 17616]
 gi|189338209|dbj|BAG47277.1| Rhs family protein [Burkholderia multivorans ATCC 17616]
          Length = 1410

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 164  IGKLKIP---AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL--DGKTIIWDKTEKQF 218
            I +++ P   AG+  D  +   +N+F  +D D GR     P  L   G    +    +Q+
Sbjct: 1221 IARIEQPLRYAGQYADEGTGLHYNTFRFYDPDVGRFINQDPIGLYGGGNLYAYGPNSQQW 1280

Query: 219  ADERLIPFSFMTDKITNRQIECGITR-TNLETHRIIMENIKHSAIYSGDIKSYG 271
             D    P+ + + K++N   + G+TR  N   H I+ +  K +A     +  YG
Sbjct: 1281 VD----PWGWCSVKLSNNMEKSGVTRPANSAAHHIVGDTAKEAAPARAILSKYG 1330


>gi|237740651|ref|ZP_04571132.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 2_1_31]
 gi|229422668|gb|EEO37715.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 2_1_31]
          Length = 434

 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK-KISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN  +L            ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKLLDKTLKLKNKDNVYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY  A A G+ A IN A + N
Sbjct: 339 QITGGEGYVTAIATGMYAAINVANRLN 365


>gi|188590356|ref|YP_001920065.1| NADH oxidase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500637|gb|ACD53773.1| NADH oxidase [Clostridium botulinum E3 str. Alaska E43]
          Length = 662

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           + +  +V+VIGGG AG EAA  AA++G +T LI  K+
Sbjct: 380 VKKQTNVVVIGGGTAGLEAACTAAEVGCTTFLIEQKS 416


>gi|257358089|gb|ACV53113.1| QuiP [Pseudomonas aeruginosa]
          Length = 486

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EEI
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYRPE---YWKPE--DSALVFALLNFGLAVNLQEEI 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIALQRSRSGKSLMAND 285


>gi|218887720|ref|YP_002437041.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218758674|gb|ACL09573.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 463

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-- 351
           ++EP   N   V P  I+ ALPE I    +    GLE++N + PG A E   +   E+  
Sbjct: 361 YIEPTMTN---VVPGDIAMALPERIVTNLVE---GLEQLNNVMPGIANEETLLYAPEIKF 414

Query: 352 FPT-------LETKKISGLFLAGQINGTTG-YEEAAAQGLV 384
           F T       LET  + GLF+AG   G  G    AAA GL+
Sbjct: 415 FATQVETDNRLET-SLKGLFVAGDGPGVAGNIVSAAATGLI 454


>gi|50287255|ref|XP_446057.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525364|emb|CAG58981.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
          I + +D+++IGGG  G  AA  AA+LG  TA I  + S  G+   + C P+   L   HL
Sbjct: 19 IKKQHDLVIIGGGPGGYVAAIKAAQLGLDTACIEKRGSLGGTCLNVGCIPSKALLNNSHL 78

Query: 59 VREIDA 64
            +I +
Sbjct: 79 YHQIKS 84


>gi|294782270|ref|ZP_06747596.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294480911|gb|EFG28686.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 434

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK-KISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN  +L            ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKLLDKTLKLKNKDNVYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY  A A G+ A IN A + N
Sbjct: 339 QITGGEGYVTAIATGMYAAINVANRLN 365


>gi|225026412|ref|ZP_03715604.1| hypothetical protein EUBHAL_00661 [Eubacterium hallii DSM 3353]
 gi|224956249|gb|EEG37458.1| hypothetical protein EUBHAL_00661 [Eubacterium hallii DSM 3353]
          Length = 667

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +N++ +V+VIGGG AG EAA  AA++G +T L+  K
Sbjct: 381 VNKNCNVVVIGGGTAGLEAACSAAEVGCTTFLLEKK 416


>gi|153813600|ref|ZP_01966268.1| hypothetical protein RUMOBE_04023 [Ruminococcus obeum ATCC 29174]
 gi|149830298|gb|EDM85391.1| hypothetical protein RUMOBE_04023 [Ruminococcus obeum ATCC 29174]
          Length = 500

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YDVIV+GGG AG  AA  + KLGA T LI  K   +G  +    +G +   H   E   +
Sbjct: 5  YDVIVVGGGPAGIMAAMASGKLGADTLLI-EKNGFLGGAATASVLGPISPFHYKDE-QVI 62

Query: 66 DGL----MGRVADAAG 77
          +G+    M R+   AG
Sbjct: 63 NGIPQDFMDRMVKEAG 78


>gi|149174678|ref|ZP_01853303.1| hypothetical protein PM8797T_26120 [Planctomyces maris DSM 8797]
 gi|148846372|gb|EDL60710.1| hypothetical protein PM8797T_26120 [Planctomyces maris DSM 8797]
          Length = 765

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 10/51 (19%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           + YD++V+GGG++G  AA  AA++G S ALI  +          P +GG G
Sbjct: 194 KKYDLVVVGGGYSGMGAAISAARMGCSVALIQDR----------PVLGGNG 234


>gi|255527095|ref|ZP_05393983.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|296187883|ref|ZP_06856276.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|255509197|gb|EET85549.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|296047504|gb|EFG86945.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
          Length = 463

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGL-GKGHLVRE 61
          YDV+++GGG  GC AA   +K   + ALI         +  ++C+    G  G+  L+ +
Sbjct: 3  YDVLILGGGIVGCAAAYELSKYNLNIALIEKDYDIADDVALINCSVVYDGCEGEDTLISK 62

Query: 62 IDAL-DGLMGRVADAAGIQFR 81
          +  + + ++G+V+D   + F 
Sbjct: 63 LQVMGNDIVGKVSDKFNVDFE 83


>gi|154490786|ref|ZP_02030727.1| hypothetical protein PARMER_00703 [Parabacteroides merdae ATCC
           43184]
 gi|154088851|gb|EDN87895.1| hypothetical protein PARMER_00703 [Parabacteroides merdae ATCC
           43184]
          Length = 635

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           +D++V+GGG AGC  A  AA+LG   ALI ++    G+ S    +G
Sbjct: 184 FDLVVVGGGIAGCCTALSAARLGCKVALIQNRPVLGGNNSSEVRVG 229


>gi|296242118|ref|YP_003649605.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Thermosphaera aggregans DSM 11486]
 gi|296094702|gb|ADG90653.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Thermosphaera aggregans DSM 11486]
          Length = 456

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIG 51
          YDV+++G G AG E+A V A  G   A++  K +  IG  +C  AIG
Sbjct: 3  YDVVIVGAGVAGLESAIVLASKGFKVAVVESKPAEKIGDKTCGDAIG 49


>gi|107100476|ref|ZP_01364394.1| hypothetical protein PaerPA_01001501 [Pseudomonas aeruginosa PACS2]
          Length = 847

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EEI
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEI 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E+A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEDA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|70933619|ref|XP_738157.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56514141|emb|CAH84030.1| hypothetical protein PC300822.00.0 [Plasmodium chabaudi chabaudi]
          Length = 53

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++ P LSNE  EKL+  +P NL +A+KIEG+T + +  L  YI K   K
Sbjct: 2   NNFPYLSNEEIEKLNKFRPSNLDEANKIEGVTMSGIYYLYHYIMKEKKK 50


>gi|257051964|ref|YP_003129797.1| geranylgeranyl reductase [Halorhabdus utahensis DSM 12940]
 gi|256690727|gb|ACV11064.1| geranylgeranyl reductase [Halorhabdus utahensis DSM 12940]
          Length = 455

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          M    YD +V+G G +GC AAA  A+ G    ++  K+ S  G ++C  A+ G
Sbjct: 1  MTTAEYDAVVVGAGVSGCYAAATMAEEGLDVVIVERKSESEAGHIACGDALKG 53


>gi|224093480|ref|XP_002309926.1| predicted protein [Populus trichocarpa]
 gi|222852829|gb|EEE90376.1| predicted protein [Populus trichocarpa]
          Length = 158

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           R +P D DY ++  LS E  EKLS  KP  + QAS+  G++PA + +LLI
Sbjct: 92  RPLPGDLDYYAMTTLSLEALEKLS--KPQTIGQASRECGVSPADITVLLI 139


>gi|94987527|ref|YP_595460.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Lawsonia
          intracellularis PHE/MN1-00]
 gi|94731776|emb|CAJ55139.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Lawsonia
          intracellularis PHE/MN1-00]
          Length = 417

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGS 43
          +NR  D+IV+GGG +G  AAA AA+ G    LIT  + T TIGS
Sbjct: 1  MNRKVDLIVVGGGLSGMTAAAFAARKGKKCILITKGNGTITIGS 44


>gi|160914669|ref|ZP_02076883.1| hypothetical protein EUBDOL_00676 [Eubacterium dolichum DSM 3991]
 gi|158433209|gb|EDP11498.1| hypothetical protein EUBDOL_00676 [Eubacterium dolichum DSM 3991]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDVIVIGGG AG  +A  A++ GA+  L+  +   +G +       G G  H   E
Sbjct: 1  MKQQYDVIVIGGGPAGLASAIAASEHGANKVLVIERDKELGGILNQCIHNGFGLHHFKEE 60

Query: 62 I 62
          +
Sbjct: 61 L 61


>gi|313634786|gb|EFS01219.1| NADH oxidase [Listeria seeligeri FSL N1-067]
          Length = 664

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +++VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNIVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|289433771|ref|YP_003463643.1| NADH:flavin oxidoreductase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170015|emb|CBH26555.1| NADH:flavin oxidoreductase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 664

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + R  +++VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTRPTNIVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|260426874|ref|ZP_05780853.1| tRNA:M(5)U-54 methyltransferase [Citreicella sp. SE45]
 gi|260421366|gb|EEX14617.1| tRNA:M(5)U-54 methyltransferase [Citreicella sp. SE45]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  R IPGL+  +  R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQTEVFRMIPGLQNASFARLGGIHRNTFLNSPTLLDNQMRLRSKPHIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVAG 386
           QI G  GY E+ A GL AG
Sbjct: 346 QITGVEGYVESCAMGLAAG 364


>gi|242280448|ref|YP_002992577.1| FAD dependent oxidoreductase [Desulfovibrio salexigens DSM 2638]
 gi|242123342|gb|ACS81038.1| FAD dependent oxidoreductase [Desulfovibrio salexigens DSM 2638]
          Length = 468

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 17/112 (15%)

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-- 351
           F+EP   N   V    I+ ALPE I    I    GLEK+N + PG A E   +   E+  
Sbjct: 364 FVEPTMKN---VTCGDIAMALPERIVRNLIE---GLEKLNDVVPGVANEETLLYAPEIKF 417

Query: 352 FPT-------LETKKISGLFLAGQINGTTG-YEEAAAQGLVAGINSARKSNK 395
           F T       LET  + GLF+AG   G  G    A+A G++     AR++ K
Sbjct: 418 FSTQVETSDQLET-ALEGLFVAGDGPGVAGNIVSASATGIIPAKEIARRAKK 468


>gi|163744287|ref|ZP_02151647.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
 gi|161381105|gb|EDQ05514.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
          Length = 462

 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          SYDVIVIG G  G  AA   A+LG  TA +  + +  G+   + C P+   L   H++ E
Sbjct: 3  SYDVIVIGSGPGGYVAAIRCAQLGLKTACVEGRETLGGTCLNVGCIPSKALLHATHMLHE 62

Query: 62 IDALDGLMGRVADAAGIQFR 81
           +   G MG   DA  + ++
Sbjct: 63 AEHNFGEMGLKGDAPSVDWK 82


>gi|110004175|emb|CAK98513.1| probable gid protein c-terminal truncated [Spiroplasma citri]
          Length = 340

 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 25/130 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLGK-- 55
           ++ VIG G AGCE A   AKLG    L   KT          T   + C+ +   + K  
Sbjct: 5   EINVIGAGLAGCEIAYQLAKLGLKVKLYEAKTLFKNPVQKLDTFAELVCSNSFRSVSKEN 64

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + A    I                    DREL+   +   +++
Sbjct: 65  AIGILKEELKLLDSLILKTAYDVQI------------TADDALSVDRELFSQKVTATLIN 112

Query: 114 QENLDVIQGE 123
             N+++I  E
Sbjct: 113 HPNINIIYDE 122


>gi|168334799|ref|ZP_02692925.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
          [Epulopiscium sp. 'N.t. morphotype B']
          Length = 584

 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-------CNPAIGG 52
          MIN+ +DV V+GGG +G  AA  AA+ G S ALI  +    G+ S       C  + GG
Sbjct: 1  MINKKFDVAVVGGGLSGICAAIAAARGGVSVALIQDRPVLGGNASSEIRMHICGASRGG 59


>gi|103488160|ref|YP_617721.1| mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
 gi|98978237|gb|ABF54388.1| Mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
          Length = 475

 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD+ VIG G AG  AA  AA  GA+ ALI H   TIG    N  +G +    ++R  +AL
Sbjct: 14 YDLAVIGAGSAGFSAAITAADQGANVALIGH--GTIGGTCVN--VGCVPSKTMIRAAEAL 69

Query: 66 DG 67
           G
Sbjct: 70 HG 71


>gi|289582429|ref|YP_003480895.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
 gi|289531982|gb|ADD06333.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
          Length = 471

 Score = 39.7 bits (91), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          RS DV+V+G G +GC AAA  A+ G    ++  KT    G ++C  A+ G
Sbjct: 18 RSPDVVVVGAGTSGCYAAATIAQAGYEVVVLERKTEEEAGHIACGDALKG 67


>gi|5669530|gb|AAD46374.1|AF162663_1 glucose-inhibited division protein [Myxococcus xanthus DK 1622]
          Length = 457

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN----GISTALPEEIQHQ-FI 323
           +YGP     + D       R GH+ +   + L  DV   +    G  T L    Q + F 
Sbjct: 244 AYGPMKPVGLRDP------RTGHEPYAVVQLLMEDVGGTSWNMVGFQTRLTWGEQKRIFS 297

Query: 324 RTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
             IPGL++   +R G      +I+ P+ L   L  K    L+ AGQI+G  GY E+AA G
Sbjct: 298 SFIPGLQQAEFLRMGQMHRNTFIDSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACG 357

Query: 383 LVAGI 387
            +  +
Sbjct: 358 YLVAL 362


>gi|84686896|ref|ZP_01014780.1| gid protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84665093|gb|EAQ11573.1| gid protein [Rhodobacterales bacterium HTCC2654]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q +  + IPGLE  +  R G      ++N P  L   +  +    +  AG
Sbjct: 286 GFQTKMKYGAQTEVFKMIPGLENASFARLGGIHRNTFMNSPTLLDEQMRLRTRPNVRFAG 345

Query: 368 QINGTTGYEEAAAQGLVA 385
           Q+ G  GY E+AA GL+A
Sbjct: 346 QVTGVEGYVESAAMGLLA 363


>gi|328862900|gb|EGG12000.1| hypothetical protein MELLADRAFT_89168 [Melampsora larici-populina
           98AG31]
          Length = 188

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 33/140 (23%)

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           T  Q+ C       +T  I+  ++  +     +++       PS+E ++++F +++ H +
Sbjct: 55  TTNQLFCWKAHAETQTRDIVRNDLDKAVHIHEEVQGQ-----PSLESEVIKFSDQDSHMV 109

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEP  L+T  V  N                           +P Y +EY++++PK+L  
Sbjct: 110 WLEPR-LHTKAVEMN---------------------------QPSYEVEYNHVDPKDLTT 141

Query: 354 TLETKKISGLFLAGQINGTT 373
            ++ +  + L   G  + TT
Sbjct: 142 GIKFRAAASLKSTGCEDLTT 161


>gi|152995745|ref|YP_001340580.1| soluble pyridine nucleotide transhydrogenase [Marinomonas sp.
          MWYL1]
 gi|189046863|sp|A6VW16|STHA_MARMS RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|150836669|gb|ABR70645.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Marinomonas sp. MWYL1]
          Length = 464

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  R YDV+V+G G AG  AA  AAK G   A+I   +   GS +    I      H V+
Sbjct: 1  MTTRHYDVVVLGTGPAGEGAAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAVK 60

Query: 61 EIDALD 66
          EI A +
Sbjct: 61 EIIAFN 66


>gi|260170776|ref|ZP_05757188.1| hypothetical protein BacD2_02842 [Bacteroides sp. D2]
 gi|315919111|ref|ZP_07915351.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692986|gb|EFS29821.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 624

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 34/184 (18%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------- 54
           + S DV++IGGG +G  A   +A++GA T LI  +T  +G M  +  +  +         
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAET-LIVEETEWLGGMLTSAGVSAVDGNYDLPAG 81

Query: 55  -----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQ 108
                +GHL      LD L  +    +G+ F        P+V       ++  + +  ++
Sbjct: 82  LFGEFRGHLADYYGGLDSL--KTGWVSGVLFE-------PSV------GNKIFHEMVGVE 126

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           + +    N  +++ E      + + I+ I M+D+++ +    +L  GT L  +  +  +K
Sbjct: 127 KNLKVWHNATLVKLE----RKDDSWIAQIQMKDHTIKKVCAKILIDGTELGDIAKMCGVK 182

Query: 169 IPAG 172
              G
Sbjct: 183 YDIG 186


>gi|15920768|ref|NP_376437.1| hypothetical protein ST0549 [Sulfolobus tokodaii str. 7]
 gi|15621551|dbj|BAB65546.1| 517aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 517

 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          +NR YDV++IGGGH G  AA+  AK G   A+   +    G+
Sbjct: 1  MNRIYDVVIIGGGHNGLVAASYLAKEGLKVAVFERRNVIGGA 42


>gi|242015071|ref|XP_002428198.1| thioredoxin reductase, putative [Pediculus humanus corporis]
 gi|212512750|gb|EEB15460.1| thioredoxin reductase, putative [Pediculus humanus corporis]
          Length = 490

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 21/165 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +D+IVIGGG  G   A  A+ LGAS  LI + T +    +       +  G + ++
Sbjct: 4   IEDKFDLIVIGGGSGGLACAKQASTLGASVCLIDYVTPSPKGNTWGMGGTCVNVGCIPKK 63

Query: 62  IDALDGLMGR-VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ----------RE 110
           +     L+G  + DAA   + + ++ K         + D E  + A+Q          R 
Sbjct: 64  LMHQAALLGEAIQDAAAYGWVINDLDK--------VKIDWERLKQAIQNHIKSVNWVTRV 115

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           IL +  ++ I G   G   +KN I      D+  I    +++  G
Sbjct: 116 ILKENKIEYING--IGKFIDKNTIEVTTKTDSKNIYGKNILIAVG 158


>gi|239636101|ref|ZP_04677115.1| dihydrolipoyl dehydrogenase [Staphylococcus warneri L37603]
 gi|239598372|gb|EEQ80855.1| dihydrolipoyl dehydrogenase [Staphylococcus warneri L37603]
          Length = 450

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 25/157 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +YD++VIG G  G  AA  AA+LG S A+I   H   T  ++ C P+   L  G  V +I
Sbjct: 4   NYDLVVIGAGPGGYVAAIRAAQLGKSVAIIEKQHVGGTCLNVGCIPSKTLLEFGSQVHQI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            A + L        GI    LN+   P +   +      L     Q  +L + N+++IQG
Sbjct: 64  HAANDL--------GITTGHLNIDY-PRLFEHKNNIVHTLTNGVTQ--LLKKNNVELIQG 112

Query: 123 EVA---GFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E     G   E N            ++   ++L TG+
Sbjct: 113 EAVVKDGLTIEMN---------QQSLKARDIILATGS 140


>gi|238893052|ref|YP_002917786.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545368|dbj|BAH61719.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 677

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +NR  +V+VIG G AG EAA  AA++G  T L+  K    G  S
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLAS 423


>gi|152968657|ref|YP_001333766.1| 2,4-dieonyl-CoA reductase, FMN-linked [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953506|gb|ABR75536.1| 2,4-dieonyl-CoA reductase, FMN-linked [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 677

 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +NR  +V+VIG G AG EAA  AA++G  T L+  K    G  S
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLAS 423


>gi|330012029|ref|ZP_08307246.1| putative NADH oxidase [Klebsiella sp. MS 92-3]
 gi|328534018|gb|EGF60670.1| putative NADH oxidase [Klebsiella sp. MS 92-3]
          Length = 677

 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +NR  +V+VIG G AG EAA  AA++G  T L+  K    G  S
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLAS 423


>gi|302389710|ref|YP_003825531.1| glucose-inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
 gi|302200338|gb|ADL07908.1| glucose-inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
          Length = 432

 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 323 IRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQING-TTGYE 376
           +R I G E      P     G +I Y  + P++ F  ++ + +  LF AG+ +G   G+ 
Sbjct: 275 LRKIKGFENARFEDPYAASKGNSIRYMSMAPRDDF--MKVQGVENLFCAGEKSGPVVGHT 332

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSR 403
           EA   G++AG N+ RK+ K++ +   R
Sbjct: 333 EAICTGILAGHNAVRKALKIEMLKLPR 359


>gi|94494359|gb|ABF29526.1| mercuric reductase [Anoxybacillus sp. HT14]
          Length = 451

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 18/123 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EID 63
           YD IVIG G A   +A  A K GA  A++  +  T+G    N  IG +    L+R  EI+
Sbjct: 42  YDYIVIGSGGAAFSSAIEAVKYGAKVAMV--ERGTVGGTCVN--IGCVPSKTLLRAGEIN 97

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY---RLAMQREILSQENLDVI 120
           AL         A    F  L+   GP    P  +   EL    R A   +++++   D I
Sbjct: 98  AL---------ARNHPFFGLHTSAGPVDLAPLVKQKNELVGQLRQAKYADLIAEYGFDFI 148

Query: 121 QGE 123
           QGE
Sbjct: 149 QGE 151


>gi|87307844|ref|ZP_01089987.1| putative secreted protein [Blastopirellula marina DSM 3645]
 gi|87289458|gb|EAQ81349.1| putative secreted protein [Blastopirellula marina DSM 3645]
          Length = 672

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          D++V+GG  +GC AA  AA++G    ++ + T+ +G    + A+G +
Sbjct: 38 DLLVVGGAESGCAAAVQAARMGVKRIVLVNDTNWVGGQFSSEALGAI 84


>gi|262044887|ref|ZP_06017929.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037614|gb|EEW38843.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 669

 Score = 39.3 bits (90), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +NR  +V+VIG G AG EAA  AA++G  T L+  K    G  S
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLAS 423


>gi|116618055|ref|YP_818426.1| glutathione reductase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096902|gb|ABJ62053.1| Glutathione reductase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 446

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSCNPAIGGLGKGHLVREI 62
           +YDVI IG GHA    A   A+ G   AL+       T  +  CN  I   G   ++  +
Sbjct: 2   NYDVIFIGSGHAAWHGAQTLARSGKKVALVEENKVAGTCTNFGCNAKILLDGPAEMMHHL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ---REILSQENLDV 119
           +   G               + +   P +  P   A +      +      +LS + +D+
Sbjct: 62  NHYHG---------------IGINDTPNIIWPELMAYKHQVIDPLSGGLAHMLSVDGIDI 106

Query: 120 IQGEVAGFNTEKNIISSIVMQ 140
           I G     N EK ++   V Q
Sbjct: 107 INGHAKFLNNEKIVVVDQVYQ 127


>gi|302336782|ref|YP_003801988.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
 gi|301633967|gb|ADK79394.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
          Length = 644

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV+VIGGG +GC AA  AAK GA  AL+  K +TI S       GG G  H 
Sbjct: 21 DVLVIGGGISGCMAAISAAKQGAKVALL-EKGATIRS-----GAGGSGCDHW 66


>gi|309775586|ref|ZP_07670586.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916680|gb|EFP62420.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 664

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G +T LI  K   +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLI-EKEDHVGGLS 421


>gi|172058886|ref|YP_001815346.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Exiguobacterium sibiricum 255-15]
 gi|171991407|gb|ACB62329.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Exiguobacterium sibiricum 255-15]
          Length = 475

 Score = 39.3 bits (90), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPA 49
          +SY ++VIGGG AG   AA AA LGA  ALI   T   G      C P+
Sbjct: 2  KSYQLVVIGGGAAGMTIAAGAASLGAHVALIEKHTHLGGDCLHYGCVPS 50


>gi|284164659|ref|YP_003402938.1| geranylgeranyl reductase [Haloterrigena turkmenica DSM 5511]
 gi|284014314|gb|ADB60265.1| geranylgeranyl reductase [Haloterrigena turkmenica DSM 5511]
          Length = 467

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          S DV+V+G G AGC AAA  A+ G    ++  KT    G ++C  A+ G
Sbjct: 16 SPDVVVVGAGTAGCYAAATVAREGYDVVVLERKTEDEAGHIACGDALKG 64


>gi|255036366|ref|YP_003086987.1| putative pyridine nucleotide-disulfide oxidoreductase [Dyadobacter
           fermentans DSM 18053]
 gi|254949122|gb|ACT93822.1| putative pyridine nucleotide-disulphide oxidoreductase [Dyadobacter
           fermentans DSM 18053]
          Length = 600

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK---------G 56
           YD++V+GGG AG  AA  AA++G + ALI  +    G+ S    +  +G          G
Sbjct: 184 YDLVVVGGGIAGTCAAISAARMGLTVALIQDRPVLGGNNSSEVRVHLMGDVDKNHYPKLG 243

Query: 57  HLVREIDALD 66
            +VRE+D  D
Sbjct: 244 RIVREMDNGD 253


>gi|149193834|ref|ZP_01870932.1| fumarate reductase flavoprotein subunit [Caminibacter
          mediatlanticus TB-2]
 gi|149135787|gb|EDM24265.1| fumarate reductase flavoprotein subunit [Caminibacter
          mediatlanticus TB-2]
          Length = 520

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
          SYD++V+G G AG  AA  A +LG++ A++  K+     S +     N A+  +G G  +
Sbjct: 2  SYDILVVGSGIAGMMAAIEAKELGSNVAIVMKKSPLANNSFMAKGGINAALNNMGDGDSI 61

Query: 60 REI--DALDGLMGRVADAA 76
           +   D L G MG   + A
Sbjct: 62 EQHIQDTLKGGMGIAEEEA 80


>gi|108763266|ref|YP_631216.1| tRNA (uracil-5-)-methyltransferase Gid [Myxococcus xanthus DK 1622]
 gi|115311598|sp|Q9S449|TRMFO_MYXXD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27804885|gb|AAO22919.1| GidA-like protein [Myxococcus xanthus]
 gi|108467146|gb|ABF92331.1| gid protein [Myxococcus xanthus DK 1622]
          Length = 457

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           F   IPGL++   +R G      +I+ P+ L   L  K    L+ AGQI+G  GY E+AA
Sbjct: 296 FSSFIPGLQQAEFLRMGQIHRNTFIDSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAA 355

Query: 381 QGLVAGI 387
            G +  +
Sbjct: 356 CGYLVAL 362


>gi|153006782|ref|YP_001381107.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030355|gb|ABS28123.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter sp. Fw109-5]
          Length = 481

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG G AG   A  AA  G   ALI  K +  G  S N    G      +RE  AL
Sbjct: 4   YDVVVIGSGPAGENGAIQAAFTGKKVALI-EKEAVPGGASANT---GTIPSKALRET-AL 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQENLDVIQGEV 124
             L  R  DA GI+ R+      P + G +     RE  R+   R+ L++  ++  +G +
Sbjct: 59  AILQARSRDAHGIELRISGTVTIPELMGRKGLVTAREHSRI---RDALNRAGVEQFRG-I 114

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           A F     I  SI       ++   ++L  GT
Sbjct: 115 ASFVDPHTIRVSIPDGGAQELQADIILLAPGT 146


>gi|297616357|ref|YP_003701516.1| glucose-inhibited division protein A [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144194|gb|ADI00951.1| glucose-inhibited division protein A [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 622

 Score = 39.3 bits (90), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          +YDVIVIGG   G  AA  +A+ GA T LI H+    G M+
Sbjct: 51 AYDVIVIGGEPEGVAAAVASARNGAKTLLIEHRDGLGGLMT 91


>gi|55377517|ref|YP_135367.1| P-hydroxybenzoate hydroxylase [Haloarcula marismortui ATCC 43049]
 gi|55230242|gb|AAV45661.1| P-hydroxybenzoate hydroxylase [Haloarcula marismortui ATCC 43049]
          Length = 472

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGG 52
          S DV+V+G G +GC AAA  A  G    ++  K  T  G ++C  A+ G
Sbjct: 20 SLDVVVVGAGTSGCYAAATVADAGYDVVIVERKDETEAGHIACGDALKG 68


>gi|257867585|ref|ZP_05647238.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873914|ref|ZP_05653567.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801641|gb|EEV30571.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808078|gb|EEV36900.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 420

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 13/78 (16%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YE 376
           +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG     
Sbjct: 346 VRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGGFNIT 398

Query: 377 EAAAQGLVAGINSARKSN 394
            A   G V+G N+A  ++
Sbjct: 399 AAFCTGHVSGKNAAETAS 416


>gi|29347868|ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|255690314|ref|ZP_05413989.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           finegoldii DSM 17565]
 gi|29339770|gb|AAO77565.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|260624107|gb|EEX46978.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           finegoldii DSM 17565]
          Length = 626

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG G AG   A  AA+LG   ALI  +    G+ S    +      HL   I+ 
Sbjct: 190 SYDLVVIGAGIAGMSTAVSAARLGCKVALINDRPVVGGNNSSEIRV------HLGGAIE- 242

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPA 90
               +G+  +  G+Q     VK+G A
Sbjct: 243 ----IGKYPELGGLQKEFGPVKEGNA 264


>gi|16263211|ref|NP_436004.1| Possible oxidase [Sinorhizobium meliloti 1021]
 gi|14523881|gb|AAK65416.1| Possible oxidase [Sinorhizobium meliloti 1021]
          Length = 452

 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          M  R  DVIV+GGG AG  AA  AAK G S  L   + +  G++   PA G
Sbjct: 1  MTMREADVIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEG 51


>gi|330814709|ref|YP_004362884.1| YD repeat protein [Burkholderia gladioli BSR3]
 gi|327374701|gb|AEA66052.1| YD repeat protein [Burkholderia gladioli BSR3]
          Length = 1412

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 171  AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            AG+  D  +   +N+F  +D D GR  +  P  L G   ++     + A   + P+ + +
Sbjct: 1233 AGQYADESTGLHYNTFRFYDPDVGRFVSQDPIGLYGGENLY--AYGRNAQRWIDPWGWCS 1290

Query: 231  DKITNRQIECGITR-TNLETHRIIMENIKHSAIYSGDIKSYG 271
             K++N   + G+TR  N   H I+ +  K +A     +  YG
Sbjct: 1291 VKLSNNMEKSGVTRPANSAAHHIVGDTSKEAAPARAILAKYG 1332


>gi|257877672|ref|ZP_05657325.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811838|gb|EEV40658.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 420

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 13/78 (16%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YE 376
           +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG     
Sbjct: 346 VRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGGFNIT 398

Query: 377 EAAAQGLVAGINSARKSN 394
            A   G V+G N+A  ++
Sbjct: 399 AAFCTGHVSGKNAAETAS 416


>gi|150403306|ref|YP_001330600.1| geranylgeranyl reductase [Methanococcus maripaludis C7]
 gi|209572864|sp|A6VJ23|GGR_METM7 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|150034336|gb|ABR66449.1| geranylgeranyl reductase [Methanococcus maripaludis C7]
          Length = 390

 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAI 50
          +N SYDV+V+G G AG  A+  A+K GA T LI  K+  IG+ + C  A+
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLI-EKSQEIGTPVRCAEAV 52


>gi|184201087|ref|YP_001855294.1| dihydrolipoamide dehydrogenase [Kocuria rhizophila DC2201]
 gi|183581317|dbj|BAG29788.1| dihydrolipoamide dehydrogenase [Kocuria rhizophila DC2201]
          Length = 455

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
           M +  YD++V+GGG AG  AA  A +LG S ALI  +    T     C P    L    L
Sbjct: 1   MADNQYDILVLGGGSAGYSAALRAVQLGYSVALIEKEKLGGTCLHWGCIPTKAYLHSAEL 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                       R ++  GI+  + ++  G AVR  + +  +  Y+      ++    +D
Sbjct: 61  AEG--------ARESEKYGIKATLESIDMG-AVRDYKNKIVQGKYKGLTG--LMKMRKVD 109

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           VIQG   G  T KN I      D +      +VL TG+
Sbjct: 110 VIQGN--GKLTGKNTIDV----DGTTYTGEHIVLATGS 141


>gi|159904909|ref|YP_001548571.1| geranylgeranyl reductase [Methanococcus maripaludis C6]
 gi|209572863|sp|A9A6R1|GGR_METM6 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|159886402|gb|ABX01339.1| geranylgeranyl reductase [Methanococcus maripaludis C6]
          Length = 390

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAI 50
          +N SYDV+V+G G AG  A+  A+K GA T LI  K+  IG+ + C  A+
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLI-EKSQEIGTPVRCAEAV 52


>gi|15835460|ref|NP_297219.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Nigg]
 gi|270285640|ref|ZP_06195034.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Nigg]
 gi|270289649|ref|ZP_06195951.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Weiss]
 gi|301337036|ref|ZP_07225238.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum MopnTet14]
 gi|14194687|sp|Q9PJI3|DLDH_CHLMU RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|7190873|gb|AAF39644.1| 2-oxo acid dehydrogenase, E3 component, lipoamide dehydrogenase,
           putative [Chlamydia muridarum Nigg]
          Length = 465

 Score = 38.9 bits (89), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 24/161 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           +N ++D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIEEREAGGTCLNRGCIPSKALLASAEIV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I        R AD  GI     ++     V+   T          + R I    N  +
Sbjct: 61  AQI--------RHADQFGIHINGFSIDYPAMVQRKDT----------VVRSIRDGLNGLI 102

Query: 120 IQGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGT 156
              ++  F+   ++ISS    I+ +  S+I+  +++L TG+
Sbjct: 103 RSNKITVFSGRGSLISSTEVKILGETPSVIKAQSIILATGS 143


>gi|325571278|ref|ZP_08146778.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155754|gb|EGC67950.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 420

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 13/78 (16%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YE 376
           +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG     
Sbjct: 346 VRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGGFNIT 398

Query: 377 EAAAQGLVAGINSARKSN 394
            A   G V+G N+A  ++
Sbjct: 399 AAFCTGHVSGKNAAETAS 416


>gi|300709867|ref|YP_003735681.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
 gi|299123550|gb|ADJ13889.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
          Length = 306

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           YDV+++GGG AGC A    A+ G  TA+     S+I
Sbjct: 13 DYDVVIVGGGPAGCSAGVFTARYGLETAIFDRGRSSI 49


>gi|261420540|ref|YP_003254222.1| mercuric reductase [Geobacillus sp. Y412MC61]
 gi|319768209|ref|YP_004133710.1| mercuric reductase [Geobacillus sp. Y412MC52]
 gi|261376997|gb|ACX79740.1| mercuric reductase [Geobacillus sp. Y412MC61]
 gi|317113075|gb|ADU95567.1| mercuric reductase [Geobacillus sp. Y412MC52]
          Length = 546

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 18/123 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EID 63
           YD IVIG G A   +A  A K GA  A++  +  T+G    N  IG +    L+R  EI+
Sbjct: 85  YDYIVIGSGGAAFSSAIEAVKYGAKVAMV--ERGTVGGTCVN--IGCVPSKTLLRAGEIN 140

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL---YRLAMQREILSQENLDVI 120
           AL         A    F  L+   GP    P  +   EL    R A   +++ +   D I
Sbjct: 141 AL---------ARNHPFLGLHTSAGPVDLAPLVKQKNELVEQLRQAKYADLIGEYGFDFI 191

Query: 121 QGE 123
           QGE
Sbjct: 192 QGE 194


>gi|291559361|emb|CBL38161.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family
           [butyrate-producing bacterium SSC/2]
          Length = 665

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA++G +T L   K   +G ++
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLF-EKNDHLGGLA 422


>gi|148990514|ref|ZP_01821652.1| hypothetical protein CGSSp6BS73_03461 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147924230|gb|EDK75327.1| hypothetical protein CGSSp6BS73_03461 [Streptococcus pneumoniae
          SP6-BS73]
          Length = 486

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          YDV++IG G +G  AA  + +LG  T LI  K S IG +  N  +G   
Sbjct: 2  YDVVIIGAGSSGALAAIASGRLGLKTCLI-EKGSRIGGVPINTLMGSFA 49


>gi|325968041|ref|YP_004244233.1| thioredoxin reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323707244|gb|ADY00731.1| thioredoxin reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 335

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +  + YD I+IGGG AG  AA  AA+ G ST +IT +
Sbjct: 20 LTGKVYDTIIIGGGPAGLSAAIYAARYGMSTIIITEE 56


>gi|297531352|ref|YP_003672627.1| mercuric reductase [Geobacillus sp. C56-T3]
 gi|297254604|gb|ADI28050.1| mercuric reductase [Geobacillus sp. C56-T3]
          Length = 546

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 18/123 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EID 63
           YD IVIG G A   +A  A K GA  A++  +  T+G    N  IG +    L+R  EI+
Sbjct: 85  YDYIVIGSGGAAFSSAIEAVKYGAKVAMV--ERGTVGGTCVN--IGCVPSKTLLRAGEIN 140

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL---YRLAMQREILSQENLDVI 120
           AL         A    F  L+   GP    P  +   EL    R A   +++ +   D I
Sbjct: 141 AL---------ARNHPFLGLHTSAGPVDLAPLVKQKNELVEQLRQAKYADLIGEYGFDFI 191

Query: 121 QGE 123
           QGE
Sbjct: 192 QGE 194


>gi|254477925|ref|ZP_05091310.1| oxidoreductase [Ruegeria sp. R11]
 gi|214028510|gb|EEB69346.1| oxidoreductase [Ruegeria sp. R11]
          Length = 431

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++IGGG+ GC AA  AA+LGA   L+   T   G    N  +   G     ++IDAL 
Sbjct: 32  DLVIIGGGYTGCSAALRAAELGAEVCLLEADTFGAGGSGRNVGLVNAGLWLPPKQIDALL 91

Query: 67  G------LMGRVADAAGIQFRVLNVKK 87
           G      L   +A A  I F +++  +
Sbjct: 92  GQKDGAHLSQTLAAAPSIVFDIISAHQ 118


>gi|307299501|ref|ZP_07579301.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914900|gb|EFN45287.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 465

 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPA---IGGLGKGHL 58
           R +D IVIG G  G       A  G   AL+  K    T  +  C P    I      HL
Sbjct: 6   REFDAIVIGSGQGGTPLVLSLADEGWRVALVERKAVGGTCVNEGCTPTKTMIASARVAHL 65

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V+  +      G VA  + +  + +  +K   V         E +R   ++ I+   NL 
Sbjct: 66  VQRSEE----YGVVAGESSVDIQKVIQRKRQVV---------ESFREGSRKRIIDSPNLS 112

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +I+G  A F  ++ +   +   +  +I   T+V+ TGT
Sbjct: 113 LIEGS-ASFVGDRELEVRLKEGETELIEARTIVINTGT 149


>gi|313901048|ref|ZP_07834536.1| putative NADH oxidase [Clostridium sp. HGF2]
 gi|312954006|gb|EFR35686.1| putative NADH oxidase [Clostridium sp. HGF2]
          Length = 664

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G +T LI  K   +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLI-EKEDHLGGLS 421


>gi|269118668|ref|YP_003306845.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
 gi|268612546|gb|ACZ06914.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
          Length = 563

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + YDVIVIGGG AG  +A  A++LGA TAL+  +
Sbjct: 105 KEYDVIVIGGGPAGYISANKASQLGAKTALVEKR 138


>gi|220912080|ref|YP_002487389.1| flavoprotein disulfide reductase [Arthrobacter chlorophenolicus A6]
 gi|219858958|gb|ACL39300.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Arthrobacter chlorophenolicus A6]
          Length = 471

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 29/165 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           + ++GGG  G EAA VAA LGA   +I                 GLG   ++ ++     
Sbjct: 12  IAILGGGPGGYEAAMVAASLGAQVTIIER--------------AGLGGSAVLTDVVPSKT 57

Query: 64  --ALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR-----EILSQ 114
             A   LM RVA+A   G++F V      P +R      +  L  LA  +     + L+ 
Sbjct: 58  LIATADLMTRVAEAGELGVKFDVDGGDFVPVMRADLKHINDRLLNLARSQSKDIHDALAS 117

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +N+ ++ G  +G   + + I  +  +    I   T++L  G   R
Sbjct: 118 QNVRILAG--SGRLLDNHTIEVLTAEGTETIEADTILLAVGAHPR 160


>gi|192291324|ref|YP_001991929.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhodopseudomonas
          palustris TIE-1]
 gi|192285073|gb|ACF01454.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Rhodopseudomonas palustris TIE-1]
          Length = 398

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          SYD IV+GGG AG  AA   A +GA TALI  + 
Sbjct: 10 SYDAIVVGGGPAGLTAAIALADIGAVTALIARQV 43


>gi|269122357|ref|YP_003310534.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
 gi|268616235|gb|ACZ10603.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
          Length = 562

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + YDVIVIGGG AG  +A  A++LGA TAL+  +
Sbjct: 105 KEYDVIVIGGGPAGYISANKASQLGAKTALVEKR 138


>gi|167767338|ref|ZP_02439391.1| hypothetical protein CLOSS21_01857 [Clostridium sp. SS2/1]
 gi|167711313|gb|EDS21892.1| hypothetical protein CLOSS21_01857 [Clostridium sp. SS2/1]
          Length = 642

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA++G +T L   K   +G ++
Sbjct: 357 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLF-EKNDHLGGLA 399


>gi|255348937|ref|ZP_05380944.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 70]
 gi|255503476|ref|ZP_05381866.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 70s]
 gi|255507154|ref|ZP_05382793.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis D(s)2923]
 gi|289525602|emb|CBJ15080.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis Sweden2]
 gi|296435162|gb|ADH17340.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis E/150]
 gi|296438882|gb|ADH21035.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis E/11023]
          Length = 465

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 24/161 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           +N ++D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIEKREAGGTCLNRGCIPSKALLAGAEVV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I        R AD  GI     ++     V+           + ++ R I    N  +
Sbjct: 61  TQI--------RHADQFGIHVEGFSINYPAMVQ----------RKDSVVRSIRDGLNGLI 102

Query: 120 IQGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGT 156
              ++  F+   ++ISS    I+ ++ S+I+  +++L TG+
Sbjct: 103 RSNKITVFSGRGSLISSTEVKILGENPSVIKAHSIILATGS 143


>gi|15605286|ref|NP_220072.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789294|ref|YP_328380.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis A/HAR-13]
 gi|237802986|ref|YP_002888180.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804908|ref|YP_002889062.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311375|ref|ZP_05353945.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 6276]
 gi|255317676|ref|ZP_05358922.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 6276s]
 gi|7531099|sp|O84561|DLDH_CHLTR RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|3328997|gb|AAC68159.1| Lipoamide Dehydrogenase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167824|gb|AAX50832.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis A/HAR-13]
 gi|231273208|emb|CAX10121.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274220|emb|CAX11014.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436090|gb|ADH18264.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/9768]
 gi|296437018|gb|ADH19188.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/11222]
 gi|296437951|gb|ADH20112.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/11074]
 gi|297140451|gb|ADH97209.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/9301]
 gi|297748687|gb|ADI51233.1| Dihydrolipoamide dehydrogenase [Chlamydia trachomatis D-EC]
 gi|297749567|gb|ADI52245.1| Dihydrolipoamide dehydrogenase [Chlamydia trachomatis D-LC]
          Length = 465

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 24/161 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           +N ++D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIEKREAGGTCLNRGCIPSKALLAGAEVV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I        R AD  GI     ++     V+           + ++ R I    N  +
Sbjct: 61  TQI--------RHADQFGIHVEGFSINYPAMVQ----------RKDSVVRSIRDGLNGLI 102

Query: 120 IQGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGT 156
              ++  F+   ++ISS    I+ ++ S+I+  +++L TG+
Sbjct: 103 RSNKITVFSGRGSLISSTEVKILGENPSVIKAHSIILATGS 143


>gi|319939108|ref|ZP_08013472.1| dihydrolipoamide dehydrogenase [Streptococcus anginosus 1_2_62CV]
 gi|319812158|gb|EFW08424.1| dihydrolipoamide dehydrogenase [Streptococcus anginosus 1_2_62CV]
          Length = 567

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           N +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 109 NDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV--EKSELGGTCLN 151


>gi|224537415|ref|ZP_03677954.1| hypothetical protein BACCELL_02293 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520941|gb|EEF90046.1| hypothetical protein BACCELL_02293 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 619

 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          ++YD++++GG   G   A  AAKLG  T++I  +T  IG +  N    GLG   +V
Sbjct: 20 QTYDIVIVGGTPGGLTTALAAAKLG-KTSVILERTQHIGGLPSN----GLGATDIV 70


>gi|152985857|ref|YP_001349702.1| putative penicillin amidase [Pseudomonas aeruginosa PA7]
 gi|150961015|gb|ABR83040.1| probable penicillin amidase [Pseudomonas aeruginosa PA7]
          Length = 847

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN-GISTALPEEIQH 320
           +Y+  + +Y  RY   +   + + G R     + +PE      V  N G++  L EEI  
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPEDSALVFVLLNFGLAVNLQEEIAS 200

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
             I    G +K+  + P Y        P E  P  E +K+ GL L GQI G  G + AA 
Sbjct: 201 LAIAQKVGSDKLAWLTPSY--------PDENLPFDEAEKLKGLRLDGQIPGLAGIDGAAR 252

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           Q     +     SN    I   R+ S   ++ +D
Sbjct: 253 QVAALSMLGVAASNNW-AIAPQRSRSGKSLLAND 285


>gi|25777812|gb|AAN75618.1| LPD1 [Cryptococcus neoformans var. neoformans]
          Length = 511

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV++IGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H+  + 
Sbjct: 47  YDVVIIGGGPGGYVAAIKAAQLGFKTACIEKRGALGGTCLNVGCIPSKAMLNNSHIFHQT 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L  R  D +GIQ   LN+ K  A +    +A  +     ++  +  +  +D I+G
Sbjct: 107 Q--HDLKNRGIDVSGIQ---LNLPKMLAAK----EASVKALTGGIETYLFKKNGIDYIKG 157

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F T   +   ++    + +    V++ TG+
Sbjct: 158 E-ASFETANKLSVKLLEGGETQVEAKNVIIATGS 190


>gi|326404795|ref|YP_004284877.1| mercuric reductase [Acidiphilium multivorum AIU301]
 gi|325051657|dbj|BAJ81995.1| mercuric reductase [Acidiphilium multivorum AIU301]
          Length = 479

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          D++VIG G AG  AA  A++LGA+ ALI H   TIG    N  IG +    L+R  +AL
Sbjct: 19 DLVVIGAGSAGFSAAIRASELGANVALIGH--GTIGGTCVN--IGCVPSKTLIRAAEAL 73


>gi|293372846|ref|ZP_06619224.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292632221|gb|EFF50821.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 624

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------- 54
           + S DV++IGGG +G  A   +A++GA+T LI  +T  +G M  +  +  +         
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAAT-LIVEETEWLGGMLTSAGVSAVDGNYDLPAG 81

Query: 55  -----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                +GHL      LD L      A   +  V     G  +      A++ L       
Sbjct: 82  LFGEFRGHLADYYGGLDSLKTGWVSAVLFEPSV-----GNKIFHEMVDAEKNL------- 129

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           ++     L  ++ E   +      I+ I M+DN++ +    +L  GT L  +  +  +K 
Sbjct: 130 KVWHNATLVKLERENDAW------IAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKY 183

Query: 170 PAG 172
             G
Sbjct: 184 DVG 186


>gi|166154772|ref|YP_001654890.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 434/Bu]
 gi|166155647|ref|YP_001653902.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336046|ref|ZP_07224290.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis L2tet1]
 gi|165930760|emb|CAP04257.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 434/Bu]
 gi|165931635|emb|CAP07211.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 465

 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 24/161 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           +N ++D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIEKREAGGTCLNRGCIPSKALLAGAEVV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I        R AD  GI     ++     V+           + ++ R I    N  +
Sbjct: 61  TQI--------RHADQFGIHVEGFSINYPAMVQ----------RKDSVVRSIRDGLNGLI 102

Query: 120 IQGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGT 156
              ++  F+   ++ISS    I+ ++ S+I+  +++L TG+
Sbjct: 103 RSNKITVFSGRGSLISSTEVKILGENPSVIKAHSIILATGS 143


>gi|237716092|ref|ZP_04546573.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407704|ref|ZP_06084252.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643812|ref|ZP_06721610.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294808473|ref|ZP_06767226.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443739|gb|EEO49530.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354512|gb|EEZ03604.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640901|gb|EFF59121.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294444401|gb|EFG13115.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 624

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------- 54
           + S DV++IGGG +G  A   +A++GA+T LI  +T  +G M  +  +  +         
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAAT-LIVEETEWLGGMLTSAGVSAVDGNYDLPAG 81

Query: 55  -----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                +GHL      LD L      A   +  V     G  +      A++ L       
Sbjct: 82  LFGEFRGHLADYYGGLDSLKTGWVSAVLFEPSV-----GNKIFHEMVDAEKNL------- 129

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           ++     L  ++ E   +      I+ I M+DN++ +    +L  GT L  +  +  +K 
Sbjct: 130 KVWHNATLVKLERENDAW------IAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKY 183

Query: 170 PAG 172
             G
Sbjct: 184 DVG 186


>gi|322391945|ref|ZP_08065409.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus peroris
           ATCC 700780]
 gi|321145171|gb|EFX40568.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus peroris
           ATCC 700780]
          Length = 567

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           N +YDV+VIGGG AG  +A  AA+LG   AL+  + S +G    N
Sbjct: 109 NDAYDVVVIGGGPAGYVSAIKAAQLGGKVALV--EKSELGGTCLN 151


>gi|83955827|ref|ZP_00964369.1| mercuric reductase [Sulfitobacter sp. NAS-14.1]
 gi|83839832|gb|EAP79009.1| mercuric reductase [Sulfitobacter sp. NAS-14.1]
          Length = 485

 Score = 38.5 bits (88), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          SYD+IV+G G AG  A+  AA+ G   AL+ H   TIG    N  +G +    ++R  DA
Sbjct: 22 SYDLIVVGAGSAGFSASITAAEAGKRVALVGH--GTIGGTCVN--VGCVPSKAMIRAADA 77

Query: 65 L 65
          +
Sbjct: 78 V 78


>gi|332799299|ref|YP_004460798.1| hypothetical protein TepRe1_1345 [Tepidanaerobacter sp. Re1]
 gi|332697034|gb|AEE91491.1| HI0933 family protein [Tepidanaerobacter sp. Re1]
          Length = 412

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG--- 374
            F  TI G ++   I     +    INPK    T+E+K ++GLF AG+   ++G TG   
Sbjct: 338 NFQITISGCKEKEAIVTRGGVSVKEINPK----TMESKIVNGLFFAGEVIDVDGVTGGYN 393

Query: 375 YEEAAAQGLVAGINSA 390
            + A + G VAG NSA
Sbjct: 394 LQSAFSTGFVAGCNSA 409


>gi|150377188|ref|YP_001313783.1| BFD/(2Fe-2S)-binding domain-containing protein [Sinorhizobium
          medicae WSM419]
 gi|150031735|gb|ABR63850.1| BFD domain protein (2Fe-2S)-binding domain protein [Sinorhizobium
          medicae WSM419]
          Length = 453

 Score = 38.5 bits (88), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          R  D+IV+GGG AG  AA  AAK G S  L   + +  G++   PA G
Sbjct: 2  READIIVVGGGPAGVSAAVEAAKSGLSVVLCEQRPALGGAIHRQPAEG 49


>gi|168333290|ref|ZP_02691574.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
          [Epulopiscium sp. 'N.t. morphotype B']
          Length = 594

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          R YD IV+GGG +G  AA  AA+ G  TAL+ ++    G+ S    +   G G +
Sbjct: 2  REYDFIVVGGGMSGVCAAISAARNGVKTALVHNRPVLGGNASSEVKVSINGAGRI 56


>gi|103487991|ref|YP_617552.1| mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
 gi|98978068|gb|ABF54219.1| Mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score = 38.5 bits (88), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + YD+IV+GGG AG  AA  AA+ GA  A+I     TIG    N  +G +    L+R ++
Sbjct: 14 KKYDLIVVGGGSAGFSAAITAAEQGAQVAVI--GAGTIGGTCVN--VGCVPSKALIRAVE 69

Query: 64 AL 65
          ++
Sbjct: 70 SI 71


>gi|160931794|ref|ZP_02079187.1| hypothetical protein CLOLEP_00625 [Clostridium leptum DSM 753]
 gi|156869131|gb|EDO62503.1| hypothetical protein CLOLEP_00625 [Clostridium leptum DSM 753]
          Length = 437

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVRE 61
          YDV+V GGG AG  AA  AA+ GA T LI  +   +G M      +P +G +  G +  E
Sbjct: 13 YDVVVAGGGPAGVCAAVSAARQGAKTLLI-ERFGILGGMMTSGHVDPILGNVAPGTMYDE 71

Query: 62 I 62
          I
Sbjct: 72 I 72


>gi|326429823|gb|EGD75393.1| FAD dependent oxidoreductase [Salpingoeca sp. ATCC 50818]
          Length = 579

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI----------- 50
          ++R+YD I++GGGH G  AAA  A+ G    L+  K   +G  + +  I           
Sbjct: 7  VSRAYDAIIVGGGHNGLVAAAYLARQGGKV-LVLEKNDQVGGAAVSSEIVPGFKFSRASY 65

Query: 51 -GGLGKGHLVREID 63
            GL +  +V+E+D
Sbjct: 66 LAGLIRPSIVKELD 79


>gi|45357951|ref|NP_987508.1| geranylgeranyl reductase [Methanococcus maripaludis S2]
 gi|74555631|sp|Q6M083|GGR_METMP RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|44920708|emb|CAF29944.1| geranylgeranyl bacterial chlorophyll reductase related
          [Methanococcus maripaludis S2]
          Length = 390

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAI 50
          +N SYDV+V+G G AG  A+  A+K GA T LI  K+  IG+ + C  A+
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLI-EKSQEIGTPVRCAEAV 52


>gi|254234168|ref|ZP_04927491.1| hypothetical protein PACG_00002 [Pseudomonas aeruginosa C3719]
 gi|126166099|gb|EAZ51610.1| hypothetical protein PACG_00002 [Pseudomonas aeruginosa C3719]
          Length = 847

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EEI
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEI 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|313620436|gb|EFR91824.1| NADH oxidase [Listeria innocua FSL S4-378]
          Length = 664

 Score = 38.5 bits (88), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +    +V+VIGGG AG EAA  AA++G +T LI     T G
Sbjct: 380 VTHPTNVVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGG 420


>gi|19704405|ref|NP_603967.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|26006763|sp|Q8REM9|TRMFO_FUSNN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|19714663|gb|AAL95266.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 434

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK-KISGLFLAG 367
           G  T L    Q +    IPGLE    IR G      +IN  +L            ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDKTLKLKNKDNIYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           QI G  GY  A A G+   +N A R  NK + I      S IG +++ +T +
Sbjct: 339 QITGGEGYVTAIATGMYVAMNVANRLENKEEFIL--EDISEIGAIVNYITEE 388


>gi|328880360|emb|CCA53599.1| Beta-carotene ketolase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIG 51
          RSYD +V+GGGH G  AAA  A+ G S  ++    ST G ++S  P  G
Sbjct: 15 RSYDAVVVGGGHNGLVAAAYLARAGRSVLVLERLGSTGGAAVSTRPFAG 63


>gi|115379513|ref|ZP_01466607.1| gid protein [Stigmatella aurantiaca DW4/3-1]
 gi|310822344|ref|YP_003954702.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase, trmfo
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363491|gb|EAU62632.1| gid protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395416|gb|ADO72875.1| Methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase, TrmFO
           [Stigmatella aurantiaca DW4/3-1]
          Length = 450

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           F   IPGL+    +R G      +I+ P+ L   L  K    LF AGQI G  GY E++A
Sbjct: 295 FTTCIPGLKDAEFLRMGQIHRNTFIDSPRLLDKDLSLKAERRLFFAGQITGVEGYVESSA 354

Query: 381 QGLVAGI 387
            G +  +
Sbjct: 355 CGYLTAL 361


>gi|25573183|gb|AAN75159.1| LPD1 [Cryptococcus neoformans var. grubii]
          Length = 511

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV++IGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H+  + 
Sbjct: 47  YDVVIIGGGPGGYVAAIKAAQLGFKTACIEKRGALGGTCLNVGCIPSKAMLNNSHIFHQT 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L  R  D +GIQ   LN+ K  A +    +A  +     ++  +  +  +D I+G
Sbjct: 107 Q--HDLKNRGIDVSGIQ---LNLPKMLAAK----EASVKALTGGIETYLFKKNGIDYIKG 157

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F T   +   ++    + +    +++ TG+
Sbjct: 158 E-ASFETANKVNVKLLEGGETQVEAKNIIIATGS 190


>gi|13541824|ref|NP_111512.1| geranylgeranyl reductase [Thermoplasma volcanium GSS1]
 gi|74581174|sp|Q979Y7|GGR_THEVO RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|14325261|dbj|BAB60165.1| cofactor biosynthesis protein [Thermoplasma volcanium GSS1]
          Length = 396

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          +YDV+VIGGG  G  AA  AAK G  T +I  +      + C     GL KG L
Sbjct: 3  TYDVLVIGGGPGGSTAARYAAKYGLRTLMIEKRPEIGSPVRCGE---GLSKGIL 53


>gi|307596220|ref|YP_003902537.1| thioredoxin reductase [Vulcanisaeta distributa DSM 14429]
 gi|307551421|gb|ADN51486.1| thioredoxin reductase [Vulcanisaeta distributa DSM 14429]
          Length = 335

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + ++ YD ++IGGG AG  AA  AA+ G ST +IT +
Sbjct: 20 LTSKVYDTVIIGGGPAGMSAAIYAARYGLSTIIITEE 56


>gi|15596229|ref|NP_249723.1| QuiP [Pseudomonas aeruginosa PAO1]
 gi|218893006|ref|YP_002441875.1| QuiP [Pseudomonas aeruginosa LESB58]
 gi|81541636|sp|Q9I4U2|QUIP_PSEAE RecName: Full=Acyl-homoserine lactone acylase quiP; Short=AHL
           acylase quiP; Short=Acyl-HSL acylase quiP; AltName:
           Full=Quorum signal utilization and inactivation protein;
           Contains: RecName: Full=Acyl-homoserine lactone acylase
           quiP subunit alpha; Short=Acyl-HSL acylase quiP subunit
           alpha; Contains: RecName: Full=Acyl-homoserine lactone
           acylase quiP subunit beta; Short=Acyl-HSL acylase quiP
           subunit beta; Flags: Precursor
 gi|9946944|gb|AAG04421.1|AE004535_8 QuiP [Pseudomonas aeruginosa PAO1]
 gi|218773234|emb|CAW29046.1| QuiP [Pseudomonas aeruginosa LESB58]
          Length = 847

 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EEI
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEI 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|302339853|ref|YP_003805059.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637038|gb|ADK82465.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Spirochaeta smaragdinae DSM 11293]
          Length = 486

 Score = 38.1 bits (87), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 25/43 (58%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          N  YDVIV GGG +G  AA  AA+ GA T L+    +  G MS
Sbjct: 4  NTVYDVIVCGGGTSGVSAAISAARNGAKTLLVERLGALGGQMS 46


>gi|58265916|ref|XP_570114.1| dihydrolipoyl dehydrogenase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134110356|ref|XP_776005.1| hypothetical protein CNBD0550 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|25956306|gb|AAN75720.1| LPD1 [Cryptococcus neoformans var. neoformans]
 gi|50258673|gb|EAL21358.1| hypothetical protein CNBD0550 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226347|gb|AAW42807.1| dihydrolipoyl dehydrogenase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 511

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV++IGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H+  + 
Sbjct: 47  YDVVIIGGGPGGYVAAIKAAQLGFKTACIEKRGALGGTCLNVGCIPSKAMLNNSHIFHQT 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L  R  D +GIQ   LN+ K  A +    +A  +     ++  +  +  +D I+G
Sbjct: 107 Q--HDLKNRGIDVSGIQ---LNLPKMLAAK----EASVKALTGGIETYLFKKNGIDYIKG 157

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F T   +   ++    + +    V++ TG+
Sbjct: 158 E-ASFETANKLNVKLLEGGETQVEAKNVIIATGS 190


>gi|329897434|ref|ZP_08272089.1| Glutathione reductase [gamma proteobacterium IMCC3088]
 gi|328921194|gb|EGG28596.1| Glutathione reductase [gamma proteobacterium IMCC3088]
          Length = 454

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+IVIG G  G  AA +AA LGA  A+I  +   +G    N  +G + K   V  
Sbjct: 1   MGSNYDLIVIGAGSGGVRAARIAASLGAKVAIIEDR--YMGGTCVN--VGCVPKKLYVYA 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-TQAD-RELYRL-AMQREILSQENLD 118
            +        V DA G  +R    K  P    P  TQA  +E+ RL  + R++L+     
Sbjct: 57  SE----FGAAVEDAEGFGWR---FKDAPEFDWPTLTQAKVKEIGRLNGIYRKMLNNSGAT 109

Query: 119 VIQG 122
           VI G
Sbjct: 110 VIDG 113


>gi|327460392|gb|EGF06729.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1057]
          Length = 461

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 19 YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 74


>gi|310816013|ref|YP_003963977.1| gid protein [Ketogulonicigenium vulgare Y25]
 gi|308754748|gb|ADO42677.1| gid protein [Ketogulonicigenium vulgare Y25]
          Length = 445

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T +    Q    + IPGL   +  R G      +IN P  L   +  K    +  AG
Sbjct: 286 GFQTKMKYGAQTNVFKMIPGLHDASFARLGGIHRNTFINSPTLLDGQMRLKSRPNIRFAG 345

Query: 368 QINGTTGYEEAAAQGLVA 385
           QI G  GY E++A GL+A
Sbjct: 346 QITGVEGYVESSAMGLLA 363


>gi|116048960|ref|YP_792238.1| putative penicillin amidase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584181|gb|ABJ10196.1| putative penicillin amidase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 847

 Score = 38.1 bits (87), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EEI
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEI 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|182419042|ref|ZP_02950296.1| NADH oxidase [Clostridium butyricum 5521]
 gi|237669339|ref|ZP_04529321.1| NADH oxidase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376997|gb|EDT74567.1| NADH oxidase [Clostridium butyricum 5521]
 gi|237655226|gb|EEP52784.1| NADH oxidase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 667

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +N+  +V+VIGGG AG EAA  AA+ G  T L   K S +G ++
Sbjct: 379 VNKHTNVVVIGGGTAGLEAACTAAEAGCMTFLF-EKKSYLGGLA 421


>gi|310641925|ref|YP_003946683.1| NADH:flavin oxidoreductase, putative [Paenibacillus polymyxa SC2]
 gi|309246875|gb|ADO56442.1| NADH:flavin oxidoreductase, putative [Paenibacillus polymyxa SC2]
          Length = 673

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           +  S  V+VIGGG AG EAA  AA++G    L   K          P +GGL +
Sbjct: 380 VRNSVQVVVIGGGTAGMEAACTAAEVGCKVTLFEEK----------PELGGLAR 423


>gi|262067705|ref|ZP_06027317.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium periodonticum ATCC
           33693]
 gi|291378430|gb|EFE85948.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium periodonticum ATCC
           33693]
          Length = 434

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK-KISGLFLAG 367
           G  T L    Q +    IPGLE    +R G      +IN  +L            ++ AG
Sbjct: 279 GFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKLLDKTLKLKNKDNVYFAG 338

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSN 394
           QI G  GY  A A G+   IN A + N
Sbjct: 339 QITGGEGYVTAIATGMYTAINVANRLN 365


>gi|228473514|ref|ZP_04058267.1| dihydrolipoyl dehydrogenase [Capnocytophaga gingivalis ATCC
          33624]
 gi|228275121|gb|EEK13924.1| dihydrolipoyl dehydrogenase [Capnocytophaga gingivalis ATCC
          33624]
          Length = 203

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
          ++YDVIVIG G  G  AA  A++LG  TA++  K +T+G    ++ C P+   L   HL+
Sbjct: 2  KNYDVIVIGAGPGGYVAAIRASQLGKKTAIV-EKYNTLGGTCLNVGCIPSKALLDSTHLL 60

Query: 60 RE 61
           +
Sbjct: 61 ED 62


>gi|218281477|ref|ZP_03487920.1| hypothetical protein EUBIFOR_00485 [Eubacterium biforme DSM 3989]
 gi|218217399|gb|EEC90937.1| hypothetical protein EUBIFOR_00485 [Eubacterium biforme DSM 3989]
          Length = 665

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G  T LI  K   +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCMTFLI-EKEDHLGGLS 421


>gi|1730742|sp|P54805|YNH2_METBA RecName: Full=Uncharacterized protein in nifH2 5'region; AltName:
          Full=ORF186
 gi|984851|gb|AAA96016.1| orf186 [Methanosarcina barkeri]
          Length = 186

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          SYDV+V+G G AG  AA  AAK GAS  L+  K      + C
Sbjct: 6  SYDVVVVGAGPAGSTAAMYAAKNGASVLLLDKKREIGSPIQC 47


>gi|39935737|ref|NP_948013.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhodopseudomonas
          palustris CGA009]
 gi|39649590|emb|CAE28112.1| putative FAD-dependent monoxygenase [Rhodopseudomonas palustris
          CGA009]
          Length = 398

 Score = 38.1 bits (87), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          SYD IV+GGG AG  AA   A+ GA TALI  +
Sbjct: 10 SYDAIVVGGGPAGLTAAIALAETGAVTALIARQ 42


>gi|282900015|ref|ZP_06307975.1| Putative oxidoreductase [Cylindrospermopsis raciborskii CS-505]
 gi|281195113|gb|EFA70050.1| Putative oxidoreductase [Cylindrospermopsis raciborskii CS-505]
          Length = 530

 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          I +SYDV+V GGGH G  AA   AK G S  ++  +    G+
Sbjct: 9  IQKSYDVVVAGGGHNGLIAACYIAKAGRSVLVLEQQDKVGGT 50


>gi|148240080|ref|YP_001225467.1| dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7803]
 gi|147848619|emb|CAK24170.1| Dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7803]
          Length = 482

 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          +DVIVIG G+ G +AA  AA+ G   A+I  +    T  +  C P+   L     VRE+ 
Sbjct: 8  FDVIVIGAGYGGFDAAKHAAEHGLKVAIIESRDMGGTCVNRGCVPSKALLAASGRVRELA 67

Query: 64 ALDGLMGRVADAAGIQF 80
            D L G    AA ++F
Sbjct: 68 DADHLAGFGIHAAPVRF 84


>gi|86138166|ref|ZP_01056741.1| hypothetical protein MED193_01525 [Roseobacter sp. MED193]
 gi|85825193|gb|EAQ45393.1| hypothetical protein MED193_01525 [Roseobacter sp. MED193]
          Length = 424

 Score = 38.1 bits (87), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D++VIGGG+ GC AA  AA++GAS  LI
Sbjct: 30 DLVVIGGGYTGCSAALKAAEMGASVCLI 57


>gi|182420284|ref|ZP_02951513.1| oxidoreductase, pyridine nucleotide-disulphide family
          [Clostridium butyricum 5521]
 gi|237666394|ref|ZP_04526379.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375879|gb|EDT73471.1| oxidoreductase, pyridine nucleotide-disulphide family
          [Clostridium butyricum 5521]
 gi|237657593|gb|EEP55148.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 319

 Score = 38.1 bits (87), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          SYD+I+IG G AG  AA  AA+ G    L+  K S++G +       G GK
Sbjct: 3  SYDLIIIGAGIAGMTAALGAARQGIGKILVIEKESSVGGIINQCIHNGFGK 53


>gi|304316800|ref|YP_003851945.1| glucose-inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778302|gb|ADL68861.1| glucose-inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 427

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 323 IRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYE 376
           +R IPGLE+     P       +I Y  I P+    +++ K +  L  AG+ +G  TG+ 
Sbjct: 276 LRKIPGLERARFEDPYSGGKANSIRYLSIAPRN--NSMKVKGLDNLLCAGEKSGLFTGHT 333

Query: 377 EAAAQGLVAGINSARKS 393
           EA   G +AG NS R S
Sbjct: 334 EAMVTGCLAGHNSVRLS 350


>gi|303237290|ref|ZP_07323860.1| alkyl hydroperoxide reductase, F subunit [Prevotella disiens
           FB035-09AN]
 gi|302482677|gb|EFL45702.1| alkyl hydroperoxide reductase, F subunit [Prevotella disiens
           FB035-09AN]
          Length = 519

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 42/158 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I R YDV+VIGGG AG  AA  +A+ G    LI  +                        
Sbjct: 211 IERQYDVMVIGGGPAGVSAAIYSARKGLKVGLIAER------------------------ 246

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                 + G+V D  GIQ    N+   P   G +  AD + +        LS   +D+ +
Sbjct: 247 ------IGGQVNDTTGIQ----NLISVPQTNGTQLAADLKSH--------LSDYPIDLFE 288

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                    K+ + SI ++   + +   V++ TG   R
Sbjct: 289 HRKIANVELKDKLKSIHVKGGEVFKAPAVIIATGANWR 326


>gi|119713765|gb|ABL97813.1| possible NADH-dependant oxidoreductase [uncultured marine bacterium
           HF10_49E08]
          Length = 617

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHL 58
           + + YD++VIGGG++G  AA   A++G   ALI  +    G+ S      A G + +G  
Sbjct: 180 LEKKYDLVVIGGGYSGLGAAISGARMGCKVALIQDRGVLGGNGSSEVRVWAKGNIRRGKY 239

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE-----ILS 113
            R  + ++ +      + G      + KK   VR  +   D  L+  A + E     I +
Sbjct: 240 PRIGEIIEEICDHAKKSPGTYEEFEDAKKEAIVRAEKN-IDLHLFHHAFKVEKQGNKISA 298

Query: 114 QENLDVIQGEVAGFN 128
               +V  G++  F+
Sbjct: 299 VHAFNVQNGQITRFS 313


>gi|157835045|pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
          Glutathione Complex
 gi|157836819|pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
          Trypanothione Complex
 gi|157836953|pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
          Disulfide Between Trypanothione And The Enzyme
 gi|157837042|pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
          Glutathionylspermidine Complex
          Length = 461

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKT-STIGSMSCNP 48
          SYD +VIGGG  G E+A  AA+LGA  A++ +HK   T  ++ C P
Sbjct: 3  SYDYLVIGGGSGGLESAWRAAELGARAAVVESHKLGGTCVNVGCVP 48


>gi|134046277|ref|YP_001097762.1| geranylgeranyl reductase [Methanococcus maripaludis C5]
 gi|209572862|sp|A4FZB4|GGR_METM5 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|132663902|gb|ABO35548.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanococcus maripaludis C5]
          Length = 390

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAI 50
          +N SYDV+V+G G AG  A+  A+K GA T L+  K+  IG+ + C  A+
Sbjct: 4  LNNSYDVVVVGAGPAGSMASYNASKNGAKT-LLLEKSQEIGTPVRCAEAV 52


>gi|157831250|pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
          Length = 478

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKT-STIGSMSCNP 48
          SYD +VIGGG  G E+A  AA+LGA  A++ +HK   T  ++ C P
Sbjct: 20 SYDYLVIGGGSGGLESAWRAAELGARAAVVESHKLGGTCVNVGCVP 65


>gi|254467596|ref|ZP_05081005.1| oxidoreductase [Rhodobacterales bacterium Y4I]
 gi|206684344|gb|EDZ44828.1| oxidoreductase [Rhodobacterales bacterium Y4I]
          Length = 423

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          D++VIGGG+ GC AA  AA+LGAS  LI  + +  G    N
Sbjct: 30 DLVVIGGGYTGCSAALKAAELGASVRLIEAEDTGSGGSGRN 70


>gi|169841667|ref|ZP_02874780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 61

 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
           E+++I + Y  +  R+  + ++ K  EK +IP+DFDY S+  LSN
Sbjct: 4   EQVEINAKYNVFIEREKAQIEKFKKLEKMVIPEDFDYESVKGLSN 48


>gi|323351609|ref|ZP_08087263.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis VMC66]
 gi|322122095|gb|EFX93821.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis VMC66]
          Length = 461

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 19 YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 74


>gi|21226820|ref|NP_632742.1| oxidoreductase [Methanosarcina mazei Go1]
 gi|20905119|gb|AAM30414.1| oxidoreductase [Methanosarcina mazei Go1]
          Length = 408

 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          SYD++V+G G AG  AA  AAK GAS  L+  K      + C
Sbjct: 18 SYDIVVVGAGPAGSTAALYAAKKGASVLLLDKKREIGSPIQC 59


>gi|83646636|ref|YP_435071.1| glutathione-disulfide reductase [Hahella chejuensis KCTC 2396]
 gi|83634679|gb|ABC30646.1| glutathione-disulfide reductase [Hahella chejuensis KCTC 2396]
          Length = 448

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSCNP 48
          YD++VIG G  G  AA VAA+LGA  A+I  +    T  ++ C P
Sbjct: 2  YDLVVIGAGSGGVRAARVAAQLGAKVAIIEERFYGGTCVNVGCVP 46


>gi|294101107|ref|YP_003552965.1| glucose-inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
 gi|293616087|gb|ADE56241.1| glucose-inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
          Length = 460

 Score = 38.1 bits (87), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 15/90 (16%)

Query: 307 PNGISTALPEEIQHQF-IRTIPGLEKVNIIRPG--------YAIEYDYINPK-ELFPTLE 356
           P  +S  LP    H+F I  +  +E +NII PG        Y +E    + + EL  TLE
Sbjct: 367 PGDLSLVLP----HRFLIDVVEFIEALNIIMPGINMNDTLLYGVEIKLYSLRLELKETLE 422

Query: 357 TKKISGLFLAGQINGTT-GYEEAAAQGLVA 385
           T  I  L++AG   G + G  +AA+ G+VA
Sbjct: 423 TPAIRNLYMAGDGAGVSRGIIQAASSGVVA 452


>gi|160902043|ref|YP_001567624.1| thioredoxin reductase [Petrotoga mobilis SJ95]
 gi|160359687|gb|ABX31301.1| thioredoxin reductase [Petrotoga mobilis SJ95]
          Length = 340

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          I + YDV++IGGG AG  AA  A + GAST L+  K    G M+    I
Sbjct: 14 IKQQYDVVIIGGGPAGISAAIYALQGGAST-LVIEKAIEGGQMNLTDII 61


>gi|317487511|ref|ZP_07946294.1| FAD dependent oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316921236|gb|EFV42539.1| FAD dependent oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 467

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 17/115 (14%)

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H  ++EP       V P  I+ ALP  I    +    GLE++N++ PG A +   +   E
Sbjct: 355 HNGYVEP---TLTEVTPGDIAMALPGRIVTNLVE---GLEQLNLVVPGIADDSTLLYAPE 408

Query: 351 L--FPT-------LETKKISGLFLAGQINGTTG-YEEAAAQGLVAGINSARKSNK 395
           +  F T       LET  +S LF+AG   G +G    AAA G++      RK  K
Sbjct: 409 IKFFSTQVATSSDLET-SVSNLFVAGDGPGVSGNIVSAAATGIIPAKAIVRKFGK 462


>gi|291534237|emb|CBL07350.1| dihydrolipoamide dehydrogenase [Megamonas hypermegale ART12/1]
          Length = 453

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVREI 62
          ++D+ +IG G AG EAA  AAK G  TALI  +    T  +  C P    L    L RE 
Sbjct: 3  NFDLAIIGAGPAGYEAAVFAAKQGLKTALIEKSELGGTCLNNGCIPTKTLLHTADLYRE- 61

Query: 63 DALDGLMGRVADAAGIQFRVLN 84
                M   AD  G+ ++ L+
Sbjct: 62 ------MTNQADIIGLDYQALS 77


>gi|309776815|ref|ZP_07671789.1| hypothetical protein HMPREF0983_02392 [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308915563|gb|EFP61329.1| hypothetical protein HMPREF0983_02392 [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 420

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          YDVIV+GGG AG  +A  A K GA   LI  +   +G +       G G  H   E+
Sbjct: 3  YDVIVVGGGPAGLASALEAWKQGAKHILILERDQELGGILNQCIHNGFGLHHFKEEL 59


>gi|321263197|ref|XP_003196317.1| dihydrolipoyl dehydrogenase [Cryptococcus gattii WM276]
 gi|54112177|gb|AAV28779.1| LPD1p [Cryptococcus gattii]
 gi|317462792|gb|ADV24530.1| dihydrolipoyl dehydrogenase, putative [Cryptococcus gattii WM276]
          Length = 511

 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV++IGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H+  + 
Sbjct: 47  YDVVIIGGGPGGYVAAIKAAQLGFKTACIEKRGALGGTCLNVGCIPSKAMLNNSHIFHQT 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L  R  D +G+Q   LN+ K  A +    +A  +     ++  +  +  +D I+G
Sbjct: 107 Q--HDLKNRGIDVSGVQ---LNLPKMLAAK----EASVKALTGGIETYLFKKNGIDYIKG 157

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F T   +   ++    + +    V++ TG+
Sbjct: 158 E-ASFETANKLSVKLLEGGETQVEAKNVIIATGS 190


>gi|54112143|gb|AAV28746.1| LPD1p [Cryptococcus gattii]
          Length = 511

 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV++IGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H+  + 
Sbjct: 47  YDVVIIGGGPGGYVAAIKAAQLGFKTACIEKRGALGGTCLNVGCIPSKAMLNNSHIFHQT 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L  R  D +G+Q   LN+ K  A +    +A  +     ++  +  +  +D I+G
Sbjct: 107 Q--HDLKNRGIDVSGVQ---LNLPKMLAAK----EASVKALTGGIETYLFKKNGIDYIKG 157

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F T   +   ++    + +    V++ TG+
Sbjct: 158 E-ASFETANKLSVKLLEGGETQVEAKNVIIATGS 190


>gi|325694538|gb|EGD36447.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK150]
          Length = 461

 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 19 YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 74


>gi|327470073|gb|EGF15537.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK330]
          Length = 446

 Score = 37.7 bits (86), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 4  YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 59


>gi|315301758|ref|ZP_07872813.1| coenzyme A disulfide reductase LpdA [Listeria ivanovii FSL F6-596]
 gi|313629872|gb|EFR97950.1| coenzyme A disulfide reductase LpdA [Listeria ivanovii FSL F6-596]
          Length = 488

 Score = 37.7 bits (86), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 37/196 (18%)

Query: 205 DGKTI--IWDKTEKQFADERLIPFSFM---TDKITNRQIECGITRTNLETHRIIMENIKH 259
           DGK I  +WD  +K++  + +I  + +   TD I    IE GI++  +     +  NI H
Sbjct: 156 DGKQISAVWDNQQKEYQTDMIILAAGVMPNTDLIARTGIELGISKA-ISVDEQMQTNIPH 214

Query: 260 -SAIYSGDI-KSYG-----PRYCP--SIEDKIVRFGERNGHQIFLEPEG-LNTDV--VYP 307
            SA+  GD+ +SY      P Y P  S  +K+ R    +     L+ +G L T +  V+ 
Sbjct: 215 ISAV--GDVAESYSLITGKPLYRPLGSTANKMGRIAGDSLTGGSLKHQGILGTGIIRVFD 272

Query: 308 NGIS-TALPEEIQHQFIRTIPGLEKVNI-----IRPGYAIEYDYINPKELFPTLETKKIS 361
             ++ T L E+  H+        E ++I     I+P  A   DY+  KEL       K S
Sbjct: 273 TAVAYTGLTEQEAHE--------EGIDIEVLYNIKPDKA---DYLGGKELTIKAIAAKES 321

Query: 362 GLFLAGQINGTTGYEE 377
           G  L  QI GT+G ++
Sbjct: 322 GRILGAQIIGTSGVDK 337


>gi|313900349|ref|ZP_07833843.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp.
          HGF2]
 gi|312954898|gb|EFR36572.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp.
          HGF2]
          Length = 420

 Score = 37.7 bits (86), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          YDVIV+GGG AG  +A  A K GA   LI  +   +G +       G G  H   E+
Sbjct: 3  YDVIVVGGGPAGLASALEAWKQGAKHILILERDQELGGILNQCIHNGFGLHHFKEEL 59


>gi|324992939|gb|EGC24859.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK405]
 gi|324994434|gb|EGC26347.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK678]
 gi|325687431|gb|EGD29452.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK72]
 gi|327462235|gb|EGF08562.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1]
 gi|327489590|gb|EGF21382.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1058]
          Length = 461

 Score = 37.7 bits (86), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 19 YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 74


>gi|313126948|ref|YP_004037218.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
 gi|312293313|gb|ADQ67773.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
          Length = 355

 Score = 37.7 bits (86), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+VIGGG AG + A   A+LG  TA++
Sbjct: 9  SYDVVVIGGGPAGLQTALYTARLGHDTAVV 38


>gi|317484343|ref|ZP_07943264.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
 gi|316924421|gb|EFV45586.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
          Length = 628

 Score = 37.7 bits (86), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V+VIGGG AGCEAA  AA+ G    L    TST+G ++
Sbjct: 371 VVVIGGGPAGCEAALTAAQRGHKVVLF-EATSTLGGLA 407


>gi|326799971|ref|YP_004317790.1| dihydrolipoyl dehydrogenase [Sphingobacterium sp. 21]
 gi|326550735|gb|ADZ79120.1| Dihydrolipoyl dehydrogenase [Sphingobacterium sp. 21]
          Length = 463

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVRE 61
           R YD IVIG G AG   A   A  G   A+I  +    T  +  C P      K  +   
Sbjct: 4   RQYDAIVIGSGQAGVPLAKKLANHGKKVAIIEKRWIGGTCVNDGCTPT-----KTWIASA 58

Query: 62  IDALDGL----MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             A D      +G   + A I   ++  +K   V   R+           Q+ + S +NL
Sbjct: 59  KAAYDAHKSTELGVFVEDAKIDMTIIKKRKDKIVENARS---------GNQKALESTKNL 109

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           DVI GE A F   K I  +       +++     L TG
Sbjct: 110 DVIFGE-AAFTDFKTIGVTSDTGSQQIMKADLFFLNTG 146


>gi|307305063|ref|ZP_07584812.1| glucose-inhibited division protein A [Sinorhizobium meliloti
          BL225C]
 gi|306902403|gb|EFN32998.1| glucose-inhibited division protein A [Sinorhizobium meliloti
          BL225C]
          Length = 450

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          R  DVIV+GGG AG  AA  AAK G S  L   + +  G++   PA G
Sbjct: 2  READVIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEG 49


>gi|317970560|ref|ZP_07971950.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CB0205]
          Length = 480

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          +DVIVIG G+ G +AA  AA+ G  TA+I  +    T  +  C P+   L     VRE+ 
Sbjct: 8  FDVIVIGAGYGGFDAAKHAAEHGLRTAIIESRDMGGTCVNRGCVPSKALLAASGRVRELA 67

Query: 64 ALDGLMGRVADAAGIQF 80
            + L G    AA ++F
Sbjct: 68 DAEHLKGFGIHAAPVRF 84


>gi|325696467|gb|EGD38357.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK160]
          Length = 461

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +
Sbjct: 19 YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWL 74


>gi|320581155|gb|EFW95376.1| Dihydrolipoamide dehydrogenase [Pichia angusta DL-1]
          Length = 632

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVR 60
           + +D++VIGGG  G  AA  AA+LG  TA +  +    G+   + C P+   L   HL  
Sbjct: 165 KKHDILVIGGGPGGYVAAIKAAQLGFDTACVEKRGRLGGTCLNVGCIPSKALLNNSHLFH 224

Query: 61  EI 62
           +I
Sbjct: 225 QI 226


>gi|296390607|ref|ZP_06880082.1| putative penicillin amidase [Pseudomonas aeruginosa PAb1]
          Length = 847

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EE+
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEV 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|332701255|ref|ZP_08421343.1| Dihydrolipoyl dehydrogenase [Desulfovibrio africanus str. Walvis
          Bay]
 gi|332551404|gb|EGJ48448.1| Dihydrolipoyl dehydrogenase [Desulfovibrio africanus str. Walvis
          Bay]
          Length = 488

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPA 49
          M +  YD+ VIGGG AG   AA AA+LGA T L+  + +  G      C P+
Sbjct: 1  MADYDYDIGVIGGGSAGLTVAAGAAQLGAKTLLVEKEKALGGDCLHYGCVPS 52


>gi|326795830|ref|YP_004313650.1| Soluble pyridine nucleotide transhydrogenase [Marinomonas
          mediterranea MMB-1]
 gi|326546594|gb|ADZ91814.1| Soluble pyridine nucleotide transhydrogenase [Marinomonas
          mediterranea MMB-1]
          Length = 464

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  R YDV+V+G G AG  AA  AAK G   A++       GS +    I      H V+
Sbjct: 1  MTTRHYDVVVLGTGPAGEGAAMNAAKAGKRVAVVEASPKVGGSCTHLGTIPSKALRHAVK 60

Query: 61 EIDALD 66
          EI A +
Sbjct: 61 EIIAFN 66


>gi|134300053|ref|YP_001113549.1| hypothetical protein Dred_2209 [Desulfotomaculum reducens MI-1]
 gi|134052753|gb|ABO50724.1| HI0933 family protein [Desulfotomaculum reducens MI-1]
          Length = 430

 Score = 37.7 bits (86), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++R YD++V+GGG AG  AAA +A LGA   L+  K + +G
Sbjct: 3  LHRDYDILVVGGGPAGMMAAARSATLGARV-LLLEKNNCLG 42


>gi|313105983|ref|ZP_07792244.1| putative penicillin amidase [Pseudomonas aeruginosa 39016]
 gi|310878746|gb|EFQ37340.1| putative penicillin amidase [Pseudomonas aeruginosa 39016]
          Length = 847

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP---NGISTALPEEI 318
           +Y+  + +Y  RY   +   + + G R     + +PE  ++ +V+     G++  L EE+
Sbjct: 144 VYARGVNAYLYRYRDKLPMDLAQSGYR---PEYWKPE--DSALVFALLNFGLAVNLQEEV 198

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
               +    G +K+  + P Y        P E  P  E +K+ GL L GQ+ G  G E A
Sbjct: 199 ASLTLAQKVGSDKLAWLTPTY--------PDENLPFDEAEKLKGLRLDGQVPGLAGVEGA 250

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           A Q     +     SN    I   R+ S   +M +D
Sbjct: 251 ARQVAALSMLGVAASNNW-AIAPQRSRSGKSLMAND 285


>gi|256378252|ref|YP_003101912.1| monooxygenase FAD-binding [Actinosynnema mirum DSM 43827]
 gi|255922555|gb|ACU38066.1| monooxygenase FAD-binding [Actinosynnema mirum DSM 43827]
          Length = 429

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--CN--------PAIGGLG 54
          S+DV+V+GG  AGC  A   +++G   AL+  KT   G     C         P + GLG
Sbjct: 21 SWDVVVVGGSIAGCATAIRFSRMGHRVALLDRKTMDDGHHKRLCTHFIQPHAVPLLAGLG 80

Query: 55 KGHL 58
            HL
Sbjct: 81 LDHL 84


>gi|257453549|ref|ZP_05618839.1| dihydrolipoyl dehydrogenase [Enhydrobacter aerosaccus SK60]
 gi|257449007|gb|EEV23960.1| dihydrolipoyl dehydrogenase [Enhydrobacter aerosaccus SK60]
          Length = 482

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +  SYD+++IGGG  G EAA  A +LG S A I  + +        PA+GG
Sbjct: 1  MKESYDLVIIGGGPGGYEAAIRAGQLGMSVACIEKRIN-----KGEPALGG 46


>gi|157874347|ref|XP_001685657.1| dihydrolipoamide dehydrogenase [Leishmania major strain Friedlin]
 gi|68128729|emb|CAJ08862.1| putative dihydrolipoamide dehydrogenase [Leishmania major strain
           Friedlin]
          Length = 476

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
           SYDV VIGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   HL  +
Sbjct: 11  SYDVTVIGGGPGGYVAAIKAAQLGLKTACIEKRGALGGTCLNVGCIPSKALLHATHLYHD 70

Query: 62  IDALDGLMG-RVADAAGIQFRVLNVKKGPAVR 92
             A     G R  +   +    +  +KG  V+
Sbjct: 71  AHANFAQYGLRGGENVTMDVSAMQAQKGKGVK 102


>gi|282890645|ref|ZP_06299168.1| hypothetical protein pah_c022o267 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499642|gb|EFB41938.1| hypothetical protein pah_c022o267 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 467

 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          N S+DV+VIG G  G  AA  AA+LG  TA I  K ST+G    N
Sbjct: 4  NTSFDVVVIGSGPGGYVAAIRAAQLGFKTACI-EKDSTLGGTCLN 47


>gi|254447443|ref|ZP_05060909.1| dihydrolipoyl dehydrogenase [gamma proteobacterium HTCC5015]
 gi|198262786|gb|EDY87065.1| dihydrolipoyl dehydrogenase [gamma proteobacterium HTCC5015]
          Length = 485

 Score = 37.7 bits (86), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIGGG AG E+A   A+LG +TA++
Sbjct: 3  MSEQYDVIVIGGGPAGYESAIRCAQLGLNTAVV 35


>gi|291333334|gb|ADD93041.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S04-C246]
          Length = 371

 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          S++V+VIGG  A   AA  A+  GAST LI   ++ IGS   NP   GL     + EID+
Sbjct: 3  SWEVVVIGGNPAALRAAISASDGGASTLLI--DSAGIGSRQGNPPYAGLAAS--LGEIDS 58


>gi|260434935|ref|ZP_05788905.1| thioredoxin reductase [Synechococcus sp. WH 8109]
 gi|260412809|gb|EEX06105.1| thioredoxin reductase [Synechococcus sp. WH 8109]
          Length = 319

 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DVI+IGGG AGC  A   A+   ST ++            NPA+G L   H +     +
Sbjct: 7  FDVIIIGGGPAGCSCALYTARSNLSTIILDK----------NPAVGALAITHKIANYPGV 56

Query: 66 DG 67
          +G
Sbjct: 57 EG 58


>gi|32475026|ref|NP_868020.1| NADH-dependant oxidoreductase [Rhodopirellula baltica SH 1]
 gi|32445566|emb|CAD75567.1| similar to NADH-dependant oxidoreductases [Rhodopirellula baltica
           SH 1]
          Length = 822

 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD++V+GGG+AG  +A  AA++G   ALI  +    G+ S    +  +G
Sbjct: 251 YDLVVVGGGYAGMASAISAARMGCRVALIQDRGVLGGNGSSEVRVWAMG 299


>gi|150015264|ref|YP_001307518.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium beijerinckii NCIMB 8052]
 gi|149901729|gb|ABR32562.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium beijerinckii NCIMB 8052]
          Length = 318

 Score = 37.4 bits (85), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          Y++I+IG G AG  AA  AA+ G +  LI  K S +G +       G GK  L
Sbjct: 4  YELIIIGAGIAGMTAALGAAREGITKILIIEKESNVGGIINQCVHNGFGKNFL 56


>gi|160879688|ref|YP_001558656.1| dihydrolipoamide dehydrogenase [Clostridium phytofermentans ISDg]
 gi|160428354|gb|ABX41917.1| dihydrolipoamide dehydrogenase [Clostridium phytofermentans ISDg]
          Length = 470

 Score = 37.4 bits (85), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          + + YD++VIG G  G  AA  AAKLG  TA+I ++    T  +  C PA   L    L 
Sbjct: 1  MEKIYDLLVIGAGPGGYVAAIKAAKLGMKTAVIENREVGGTCLNRGCVPAKAMLHAAKLY 60

Query: 60 REI 62
          +E+
Sbjct: 61 QEV 63


>gi|93004944|ref|YP_579381.1| dihydrolipoamide dehydrogenase [Psychrobacter cryohalolentis K5]
 gi|92392622|gb|ABE73897.1| dihydrolipoamide dehydrogenase [Psychrobacter cryohalolentis K5]
          Length = 483

 Score = 37.4 bits (85), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          SYD++VIGGG  G EAA  A +LG S A I  +          PA+GG
Sbjct: 4  SYDLVVIGGGPGGYEAAIRAGQLGMSVACIEKRV-----YKGEPALGG 46


>gi|76802915|ref|YP_331010.1| electron-transferring-flavoprotein dehydrogenase 2 [Natronomonas
          pharaonis DSM 2160]
 gi|76558780|emb|CAI50373.1| predicted electron-transferring-flavoprotein dehydrogenase 2
          [Natronomonas pharaonis DSM 2160]
          Length = 457

 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGG 52
          M   SYD++V+GGG AGC AAA AA+ G    L+  K+   G  ++C  AI G
Sbjct: 1  MPPESYDIVVVGGGTAGCFAAATAAQNGLDVVLLERKSEEEGGHIACGDAIKG 53


>gi|87125511|ref|ZP_01081356.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp.
          RS9917]
 gi|86166811|gb|EAQ68073.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp.
          RS9917]
          Length = 480

 Score = 37.4 bits (85), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          +DVIVIG G+ G +AA  AA+ G   A+I  +    T  +  C P+   L     VRE+ 
Sbjct: 8  FDVIVIGAGYGGFDAAKHAAEHGLKVAIIETRDMGGTCVNRGCVPSKALLAASGRVRELA 67

Query: 64 ALDGLMGRVADAAGIQF 80
            D L G    AA ++F
Sbjct: 68 DADHLAGFGIHAAPVRF 84


>gi|290996402|ref|XP_002680771.1| predicted protein [Naegleria gruberi]
 gi|284094393|gb|EFC48027.1| predicted protein [Naegleria gruberi]
          Length = 468

 Score = 37.4 bits (85), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGS 43
          YD+IV+GGG  G + + +AA LGA  AL+ + K S+ GS
Sbjct: 7  YDLIVVGGGSGGLKCSKLAADLGAKVALLDYVKPSSQGS 45


>gi|222479834|ref|YP_002566071.1| geranylgeranyl reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452736|gb|ACM57001.1| geranylgeranyl reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 456

 Score = 37.4 bits (85), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGG 52
          YDV+V G G AGC AAA  A  G    ++  K +   G ++C  A+ G
Sbjct: 6  YDVVVAGAGTAGCYAAATIANEGLDVVIVERKDAEEAGHIACGDALKG 53


>gi|327541356|gb|EGF27897.1| Glucose-inhibited division protein A-related protein
           [Rhodopirellula baltica WH47]
          Length = 807

 Score = 37.4 bits (85), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD++V+GGG+AG  +A  AA++G   ALI  +    G+ S    +  +G
Sbjct: 236 YDLVVVGGGYAGMASAISAARMGCRVALIQDRGVLGGNGSSEVRVWAMG 284


>gi|319947063|ref|ZP_08021297.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           australis ATCC 700641]
 gi|319747111|gb|EFV99370.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           australis ATCC 700641]
          Length = 568

 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           + +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKVALV--EKSELGGTCLN 152


>gi|300783978|ref|YP_003764269.1| oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299793492|gb|ADJ43867.1| oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 512

 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          SYDV+++GGGH G  AAA  A+ G S  ++  +  T G+
Sbjct: 3  SYDVVIVGGGHNGLVAAAYLARAGRSVLVLERREETGGA 41


>gi|85057419|ref|YP_456335.1| dihydrolipoamide dehydrogenase [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84789524|gb|ABC65256.1| dihydrolipoamide dehydrogenase [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 457

 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIG-SMSCNPAIGGLGKGHLVRE 61
          ++YDV+VIGGG  G  AA  AA++GA  AL+  HK   I  +  C P    L    + ++
Sbjct: 2  KNYDVLVIGGGPGGYVAAIKAAQIGAKVALVEKHKLGGICLNYGCIPTKAYLKSAKIYKD 61

Query: 62 I 62
          I
Sbjct: 62 I 62


>gi|39939089|ref|NP_950855.1| fatty acid/phospholipid biosynthesis enzyme [Onion yellows
          phytoplasma OY-M]
 gi|39722198|dbj|BAD04688.1| fatty acid/phospholipid biosynthesis enzyme [Onion yellows
          phytoplasma OY-M]
          Length = 457

 Score = 37.4 bits (85), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIG-SMSCNPAIGGLGKGHLVRE 61
          ++YDV+VIGGG  G  AA  AA++GA  AL+  HK   I  +  C P    L    + ++
Sbjct: 2  KNYDVLVIGGGPGGYVAAIKAAQMGAKVALVEKHKLGGICLNYGCIPTKAYLKSAKMYKD 61

Query: 62 I 62
          I
Sbjct: 62 I 62


>gi|71064685|ref|YP_263412.1| dihydrolipoamide dehydrogenase [Psychrobacter arcticus 273-4]
 gi|71037670|gb|AAZ17978.1| dihydrolipoamide dehydrogenase [Psychrobacter arcticus 273-4]
          Length = 483

 Score = 37.4 bits (85), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          SYD++VIGGG  G EAA  A +LG S A I  +          PA+GG
Sbjct: 4  SYDLVVIGGGPGGYEAAIRAGQLGMSVACIEKRV-----YKGEPALGG 46


>gi|332304741|ref|YP_004432592.1| FAD dependent oxidoreductase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172070|gb|AEE21324.1| FAD dependent oxidoreductase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 523

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N SYDVIV+GGGH G  +A   A+ G    L+      IG MS +  +      H++  
Sbjct: 1  MNNSYDVIVVGGGHNGLVSACYLAEEGKKV-LVLEAADKIGGMSASGYLIPEAPEHMIHS 59

Query: 62 IDALDGLMGRV 72
            ALD +  RV
Sbjct: 60 C-ALDLMSLRV 69


>gi|326561810|gb|EGE12145.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 7169]
 gi|326568965|gb|EGE19034.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC1]
          Length = 482

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +  SYD++VIGGG  G EAA   A+LG S A I  +          PA+GG
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVH-----KGEPALGG 46


>gi|326569264|gb|EGE19325.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC7]
          Length = 482

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +  SYD++VIGGG  G EAA   A+LG S A I  +          PA+GG
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVH-----KGEPALGG 46


>gi|296112302|ref|YP_003626240.1| pyruvate dehydrogenase E3 component (dihydrolipoamide
          dehydrogenase) [Moraxella catarrhalis RH4]
 gi|295919996|gb|ADG60347.1| pyruvate dehydrogenase E3 component (dihydrolipoamide
          dehydrogenase) [Moraxella catarrhalis RH4]
 gi|326563246|gb|EGE13513.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 46P47B1]
 gi|326563360|gb|EGE13625.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 12P80B1]
 gi|326565898|gb|EGE16059.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 103P14B1]
 gi|326571940|gb|EGE21945.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC8]
 gi|326575452|gb|EGE25377.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 101P30B1]
 gi|326576460|gb|EGE26368.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis CO72]
 gi|326577931|gb|EGE27795.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis O35E]
          Length = 482

 Score = 37.4 bits (85), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +  SYD++VIGGG  G EAA   A+LG S A I  +          PA+GG
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVH-----KGEPALGG 46


>gi|296133133|ref|YP_003640380.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermincola sp. JR]
 gi|296031711|gb|ADG82479.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermincola potens JR]
          Length = 424

 Score = 37.4 bits (85), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 19/27 (70%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+VIGGG AGC AA  A K GA  ALI
Sbjct: 3  VVVIGGGWAGCSAAYFAKKAGAEVALI 29


>gi|91791107|ref|YP_552057.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Polaromonas sp. JS666]
 gi|91700988|gb|ABE47159.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Polaromonas sp. JS666]
          Length = 405

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           +++IGGG+ G E AAVAAKLG +  ++    + +  ++C PA+
Sbjct: 147 LVLIGGGYVGLEIAAVAAKLGLAVTVLEAAPTVLARVTC-PAV 188


>gi|305664128|ref|YP_003860416.1| Thioredoxin-disulfide reductase [Ignisphaera aggregans DSM 17230]
 gi|304378697|gb|ADM28536.1| Thioredoxin-disulfide reductase [Ignisphaera aggregans DSM 17230]
          Length = 327

 Score = 37.4 bits (85), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          SYDV++IGGG AG  AA   A+ G  TA+IT
Sbjct: 5  SYDVVIIGGGIAGFSAALYTARQGLKTAVIT 35


>gi|318040409|ref|ZP_07972365.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CB0101]
          Length = 480

 Score = 37.4 bits (85), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          +DVIVIG G+ G +AA  AA+ G  TA+I  +    T  +  C P+   L     VRE+ 
Sbjct: 8  FDVIVIGAGYGGFDAAKHAAEHGLRTAIIESRDMGGTCVNRGCVPSKALLAASGRVRELA 67

Query: 64 ALDGLMGRVADAAGIQF 80
            + L G    AA ++F
Sbjct: 68 DAEHLKGFGIHAAPVRF 84


>gi|307318181|ref|ZP_07597617.1| glucose-inhibited division protein A [Sinorhizobium meliloti
          AK83]
 gi|306896222|gb|EFN26972.1| glucose-inhibited division protein A [Sinorhizobium meliloti
          AK83]
          Length = 450

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          R  D+IV+GGG AG  AA  AAK G S  L   + +  G++   PA G
Sbjct: 2  READIIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEG 49


>gi|163742427|ref|ZP_02149814.1| hypothetical protein RG210_01315 [Phaeobacter gallaeciensis 2.10]
 gi|161384377|gb|EDQ08759.1| hypothetical protein RG210_01315 [Phaeobacter gallaeciensis 2.10]
          Length = 436

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          S D++V+GGG+ GC AA  AA+LGA   L+  +T   G    N
Sbjct: 31 SADLVVVGGGYTGCSAALRAAELGADVRLLEAETFGAGGSGRN 73


>gi|86742562|ref|YP_482962.1| soluble pyridine nucleotide transhydrogenase [Frankia sp. CcI3]
 gi|86569424|gb|ABD13233.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Frankia sp. CcI3]
          Length = 470

 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          YDV+VIG G  G +AA  AAKLG   A++  K   IG +S N
Sbjct: 4  YDVLVIGSGPGGQKAAIAAAKLGRRVAIV-DKREMIGGVSIN 44


>gi|332293610|ref|YP_004432219.1| dihydrolipoamide dehydrogenase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171696|gb|AEE20951.1| dihydrolipoamide dehydrogenase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 465

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 18/156 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDV VIG G  G  AA   A+LG  TA+I  K ST+G    ++ C P+   L   H   
Sbjct: 3   SYDVAVIGSGPGGYVAAIRCAQLGMKTAII-EKYSTLGGTCLNVGCIPSKALLDSSHHYE 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DA+        D   +    LN++K  +    R Q   +     ++  ++ + N+DV 
Sbjct: 62  --DAIKHFEDHGIDVGEVS---LNLEKMIS----RKQGVVDTTTKGIEF-LMGKNNIDVY 111

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           QG V  F    +I  +I  + N  I     ++ TG+
Sbjct: 112 QG-VGSFKDATHI--NIAGEKNETIEAKNTIIATGS 144


>gi|299132692|ref|ZP_07025887.1| mercuric reductase [Afipia sp. 1NLS2]
 gi|298592829|gb|EFI53029.1| mercuric reductase [Afipia sp. 1NLS2]
          Length = 754

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YD++VIG G AG  A+  AA  GA  ALI     TIG    N  IG +    L+R  +
Sbjct: 291 RAYDLVVIGAGSAGFSASITAADQGAQVALI--GAGTIGGTCVN--IGCVPSKTLIRAAE 346

Query: 64  AL 65
            L
Sbjct: 347 TL 348


>gi|297620212|ref|YP_003708317.1| geranylgeranyl reductase [Methanococcus voltae A3]
 gi|297379189|gb|ADI37344.1| geranylgeranyl reductase [Methanococcus voltae A3]
          Length = 391

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAI 50
          +IN SYDV+VIG G AG  A+  A+K+GA T L+  K+  IG  + C  A+
Sbjct: 4  LIN-SYDVVVIGAGPAGSMASYNASKMGAKT-LLVEKSQEIGEPVRCAEAV 52


>gi|78186657|ref|YP_374700.1| dihydrolipoamide dehydrogenase [Chlorobium luteolum DSM 273]
 gi|78166559|gb|ABB23657.1| dihydrolipoamide dehydrogenase [Chlorobium luteolum DSM 273]
          Length = 472

 Score = 37.4 bits (85), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R  DV VIG G  G EAA +AA++G   ALI  + S +G +  N   G +    L+R  +
Sbjct: 14  RKVDVAVIGSGPGGYEAALLAARMGMQVALI--EKSALGGVCVN--WGCIPTKALLRSAE 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A D  + R   A G+     + +   AV+  RT   +    +  Q   L +  ++V+ GE
Sbjct: 70  AFD--LVRKGAALGLHAPGASFELAAAVKRSRTVVLKISKGIEYQ---LRKAGVEVVPGE 124

Query: 124 V--AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
              AG + E +II    + D   I   ++++ TG  +R
Sbjct: 125 ARFAGPH-ELDIIREGAVADT--ITARSIIIATGGRMR 159


>gi|111225497|ref|YP_716291.1| soluble pyridine nucleotide transhydrogenase [Frankia alni
          ACN14a]
 gi|111153029|emb|CAJ64776.1| soluble pyridine nucleotide transhydrogenase [Frankia alni
          ACN14a]
          Length = 513

 Score = 37.0 bits (84), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          YDV+VIG G  G +AA  AAKLG   A++  K   IG +S N
Sbjct: 48 YDVLVIGSGPGGQKAAIAAAKLGRRVAIV-DKREMIGGVSIN 88


>gi|78044723|ref|YP_358935.1| fumarate reductase, flavoprotein subunit [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77996838|gb|ABB15737.1| fumarate reductase, flavoprotein subunit [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 569

 Score = 37.0 bits (84), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGA-STALITHKTSTIGSMSC-----NPAIGGLGKGHLV 59
          YDV+VIG G AG +AA VAAK G  + AL+T    T  +  C     N A+  + K   +
Sbjct: 4  YDVLVIGSGGAGMQAALVAAKSGELNVALMTKVFPTRSATCCAQGGTNAALRNVDKSDSI 63

Query: 60 REIDALDGLMGR--VADAAGIQFRV 82
           E  A D + G   +AD   ++F V
Sbjct: 64 -EKHAFDTIKGSDFLADQDAVEFFV 87


>gi|326795650|ref|YP_004313470.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Marinomonas mediterranea MMB-1]
 gi|326546414|gb|ADZ91634.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Marinomonas mediterranea MMB-1]
          Length = 385

 Score = 37.0 bits (84), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH---KTSTIGS---MSCNPAIGGLGK 55
           +N  YD+IV+GGG AG   A + A+ G + ALI +       +G     S NP +  LG 
Sbjct: 1   MNTQYDLIVLGGGPAGLAVATLQARQGKTVALIDNSDPHAEKVGESVPASFNPLLKKLGL 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR--EILS 113
             L  E              + +++  +    G   R  R Q +++L   A+Q   E++S
Sbjct: 61  PELTDEHHCRIAGSDAYWSGSRVKYDFMLHLNGSDWRLNRRQFEKDLLDAAIQSGVEVVS 120

Query: 114 QE 115
            +
Sbjct: 121 TQ 122


>gi|153854089|ref|ZP_01995397.1| hypothetical protein DORLON_01388 [Dorea longicatena DSM 13814]
 gi|149753138|gb|EDM63069.1| hypothetical protein DORLON_01388 [Dorea longicatena DSM 13814]
          Length = 468

 Score = 37.0 bits (84), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREI 62
          YDV+VIG G  G  AA  AAKLG  TA+I  + +  T  +  C PA   +    L RE+
Sbjct: 5  YDVVVIGAGPGGYVAAIKAAKLGLKTAIIEERRAGGTCLNRGCIPAKAMIHASSLYREM 63


>gi|146097055|ref|XP_001468025.1| dihydrolipoamide dehydrogenase [Leishmania infantum JPCM5]
 gi|44804791|gb|AAS47708.1| dihydrolipoamide dehydrogenase [Leishmania major]
 gi|134072391|emb|CAM71099.1| putative dihydrolipoamide dehydrogenase [Leishmania infantum
          JPCM5]
 gi|322501995|emb|CBZ37079.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 476

 Score = 37.0 bits (84), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          SYDV VIGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   HL  +
Sbjct: 11 SYDVTVIGGGPGGYVAAIKAAQLGLKTACIEKRGALGGTCLNVGCIPSKALLHATHLYHD 70

Query: 62 IDA 64
            A
Sbjct: 71 AHA 73


>gi|327460358|gb|EGF06695.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK1057]
          Length = 568

 Score = 37.0 bits (84), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           + +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV--EKSELGGTCLN 152


>gi|62319084|dbj|BAD94229.1| hypothetical protein [Arabidopsis thaliana]
          Length = 147

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI----GGLGKGHLVR 60
           SYD+IV+ GG  G EA A + KL              G++  +PA+     GL KG   +
Sbjct: 28  SYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKG---K 84

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
           +  A   +  ++ D + I+ RVL        RGP T  +  L
Sbjct: 85  KATAFPAMCSKLTDQSHIEHRVLVDGNLITSRGPGTSLEFAL 126


>gi|163739235|ref|ZP_02146647.1| hypothetical protein RGBS107_01385 [Phaeobacter gallaeciensis
          BS107]
 gi|161387635|gb|EDQ11992.1| hypothetical protein RGBS107_01385 [Phaeobacter gallaeciensis
          BS107]
          Length = 433

 Score = 37.0 bits (84), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          S D++V+GGG+ GC AA  AA+LGA   L+  +T   G    N
Sbjct: 28 SADLVVVGGGYTGCSAALRAAELGADVRLLEAETFGAGGSGRN 70


>gi|327462211|gb|EGF08538.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK1]
          Length = 568

 Score = 37.0 bits (84), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           + +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV--EKSELGGTCLN 152


>gi|325694506|gb|EGD36415.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK150]
          Length = 568

 Score = 37.0 bits (84), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           + +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV--EKSELGGTCLN 152


>gi|329889707|ref|ZP_08268050.1| mercuric reductase [Brevundimonas diminuta ATCC 11568]
 gi|328845008|gb|EGF94572.1| mercuric reductase [Brevundimonas diminuta ATCC 11568]
          Length = 476

 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          +YD++VIG G AG  AA  AA+ GA  AL+     TIG    N  IG +    L+R ++ 
Sbjct: 14 TYDLVVIGAGSAGFSAAITAAEEGARVALV--GAGTIGGTCVN--IGCVPSKALIRAVEP 69

Query: 65 L 65
          L
Sbjct: 70 L 70


>gi|308069007|ref|YP_003870612.1| NADH oxidase [Paenibacillus polymyxa E681]
 gi|305858286|gb|ADM70074.1| NADH oxidase [Paenibacillus polymyxa E681]
          Length = 673

 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           +  +  V+VIGGG AG EAA  AA++G    L   K          P +GGL +
Sbjct: 380 VKNNVQVVVIGGGTAGMEAACTAAEVGCKVTLFEEK----------PELGGLAR 423


>gi|153813637|ref|ZP_01966305.1| hypothetical protein RUMOBE_04060 [Ruminococcus obeum ATCC 29174]
 gi|149830253|gb|EDM85346.1| hypothetical protein RUMOBE_04060 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score = 37.0 bits (84), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          ++YD+++IGGG AG  AA  A K G  + LI  +   +G +
Sbjct: 2  KTYDIVIIGGGPAGLSAAVAARKNGTESILILERDKELGGI 42


>gi|324992905|gb|EGC24825.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           sanguinis SK405]
 gi|327474231|gb|EGF19638.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK408]
          Length = 568

 Score = 37.0 bits (84), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           + +YD++VIGGG AG  AA  AA+LG   AL+  + S +G    N
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV--EKSELGGTCLN 152


>gi|255264032|ref|ZP_05343374.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
 gi|255106367|gb|EET49041.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
          Length = 462

 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          SYDVIVIG G  G  +A   A+LG  TA++  + +  G+   + C P+   L   H++ E
Sbjct: 3  SYDVIVIGSGPGGYVSAIRCAQLGLKTAIVEGRETLGGTCLNVGCIPSKALLHASHMLHE 62

Query: 62 IDALDGLMGRVADAAGIQFR 81
           +   G MG    +  + ++
Sbjct: 63 AEHNFGAMGLKGKSPSVDWK 82


>gi|56750361|ref|YP_171062.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 6301]
 gi|56685320|dbj|BAD78542.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 6301]
          Length = 479

 Score = 37.0 bits (84), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          YDVIVIG G+ G +AA  A + G  TA++  +    T  +  C P+   L     VREI 
Sbjct: 7  YDVIVIGAGYGGFDAAKHACEKGLKTAIVEARDLGGTCVNRGCVPSKALLAASGRVREIT 66

Query: 64 ALDGLMGRVADAAGIQF 80
            D L        G+ F
Sbjct: 67 DTDHLQNFGIQVQGVSF 83


>gi|326444033|ref|ZP_08218767.1| putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 508

 Score = 37.0 bits (84), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIG 51
          SYD +V+GGGH G  AAA  A+ G S  ++    +T G ++S  P  G
Sbjct: 4  SYDAVVVGGGHNGLVAAAYLARAGRSVLVLERSPATGGAAVSARPFAG 51


>gi|254393133|ref|ZP_05008291.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|294815687|ref|ZP_06774330.1| Oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|197706778|gb|EDY52590.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|294328286|gb|EFG09929.1| Oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 510

 Score = 37.0 bits (84), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIG 51
          SYD +V+GGGH G  AAA  A+ G S  ++    +T G ++S  P  G
Sbjct: 6  SYDAVVVGGGHNGLVAAAYLARAGRSVLVLERSPATGGAAVSARPFAG 53


>gi|81300007|ref|YP_400215.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 7942]
 gi|81168888|gb|ABB57228.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 7942]
          Length = 479

 Score = 37.0 bits (84), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
          YDVIVIG G+ G +AA  A + G  TA++  +    T  +  C P+   L     VREI 
Sbjct: 7  YDVIVIGAGYGGFDAAKHACEKGLKTAIVEARDLGGTCVNRGCVPSKALLAASGRVREIT 66

Query: 64 ALDGLMGRVADAAGIQF 80
            D L        G+ F
Sbjct: 67 DTDHLQNFGIQVQGVSF 83


Searching..................................................done


Results from round 2




>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040485|gb|ACT57281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR
Sbjct: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI
Sbjct: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN
Sbjct: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC
Sbjct: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL
Sbjct: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI
Sbjct: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS
Sbjct: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES
Sbjct: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG
Sbjct: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600

Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
           MTPAALNLLLIYIKKNTVKLNEIVLV
Sbjct: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626


>gi|315122031|ref|YP_004062520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495433|gb|ADR52032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 625

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 526/625 (84%), Positives = 579/625 (92%), Gaps = 1/625 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YDVIVIGGGHAGCEAA+ AA++GASTALITHK STIGSMSCNPAIGGLGKGHLVR
Sbjct: 1   MLKSCYDVIVIGGGHAGCEAASAAARIGASTALITHKISTIGSMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA+GIQFR+LN+KKGPAVRGPRTQADRELYRLAMQREILSQEN+DVI
Sbjct: 61  EIDALDGLMGRVADASGIQFRILNIKKGPAVRGPRTQADRELYRLAMQREILSQENIDVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEV  FN + + ISSI+MQD +MIRCST+VLTTGTFLRG+I+IGK KIPAGRMGD PSN
Sbjct: 121 QGEVTDFNVKDDKISSILMQDGTMIRCSTLVLTTGTFLRGIIYIGKSKIPAGRMGDPPSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            LFNSFM+FDFD GRLKTGTPARLDG+TIIW+KTEKQ+AD+ L+PFSFMTDKITN+QI C
Sbjct: 181 CLFNSFMQFDFDMGRLKTGTPARLDGRTIIWEKTEKQYADKNLVPFSFMTDKITNKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRTN ETHRII ENIKHS+IYSGDIKS GPRYCPSIEDKI+RFGERNGHQ+FLEPEGL
Sbjct: 241 GITRTNFETHRIITENIKHSSIYSGDIKSRGPRYCPSIEDKIIRFGERNGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T VVYPNGISTALPEEIQHQFIRTIPGLEKV II PGYAIEYDY+NP+EL+PTLETKKI
Sbjct: 301 CTHVVYPNGISTALPEEIQHQFIRTIPGLEKVEIISPGYAIEYDYVNPEELYPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLFLAGQINGTTGYEEAAAQGLVAGINSARKS  LDC+CFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 TGLFLAGQINGTTGYEEAAAQGLVAGINSARKSKGLDCVCFSRTDSYIGVMIDDLTSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           +EPYRMFTSRAEYR+SLR +NADNRLTPIGM+LGCIG+ R++RF  YIQEYN LR LLKS
Sbjct: 421 VEPYRMFTSRAEYRLSLRTENADNRLTPIGMELGCIGKERRERFKNYIQEYNLLRDLLKS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +++TSKN++STSI  KQDGK R AY+ LSYPDFSI+NLFSI PDA KFSS+V+ERL+IES
Sbjct: 481 VIITSKNIASTSIPLKQDGKIRNAYDLLSYPDFSIKNLFSIYPDACKFSSIVLERLKIES 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SY  YT RQM+EAKEIKFEEKRLIP DFDYSSLPALSNELKEKLS +KPFNLLQASKIEG
Sbjct: 541 SYDVYTKRQMVEAKEIKFEEKRLIPNDFDYSSLPALSNELKEKLSCVKPFNLLQASKIEG 600

Query: 601 MTPAALNLLLIYIKKN-TVKLNEIV 624
           MTPAALNLLLIYIKKN ++K N++V
Sbjct: 601 MTPAALNLLLIYIKKNTSIKENKMV 625


>gi|224585669|ref|YP_002639468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|254811518|sp|C0Q2P1|MNMG_SALPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|224470197|gb|ACN48027.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 629

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMTAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|28899854|ref|NP_799459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361980|ref|ZP_05774985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus K5030]
 gi|260876533|ref|ZP_05888888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AN-5034]
 gi|260897410|ref|ZP_05905906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus Peru-466]
 gi|260902395|ref|ZP_05910790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ4037]
 gi|31076670|sp|Q87K98|MNMG_VIBPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28808106|dbj|BAC61343.1| glucose inhibited division protein A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087884|gb|EFO37579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus Peru-466]
 gi|308090424|gb|EFO40119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AN-5034]
 gi|308107142|gb|EFO44682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ4037]
 gi|308114121|gb|EFO51661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus K5030]
          Length = 631

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+ S   L  +   A         E+
Sbjct: 482 STWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLSEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|153838485|ref|ZP_01991152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ3810]
 gi|149748108|gb|EDM58967.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus AQ3810]
          Length = 631

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/623 (45%), Positives = 386/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IRGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+ S   L  +   A         E+
Sbjct: 482 STWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHEHTKLPVDLDYKDVKGLSNEVVAKLSEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|242241378|ref|YP_002989559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dickeya dadantii Ech703]
 gi|242133435|gb|ACS87737.1| glucose inhibited division protein A [Dickeya dadantii Ech703]
          Length = 629

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 393/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q     R  TVVLT GTFL G IHIG      GR GD PS +L   
Sbjct: 127 DLIVENDRVVGVVTQMGLKFRARTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSF+ D   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTQQHGDNPMPVFSFLGDASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEHTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYDY +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMQGMENARIVRPGYAIEYDYFDPRDLKQTLESKYIAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYLGVLVDDLCTLGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRQLGMVDDERWARFNEKLENIEKERQRLRGIFVH 486

Query: 485 SK--NLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +   +   ++  K    +  +  + L  P+     L  +   +     +   E+++I+ 
Sbjct: 487 PQSGQIEQVNVLLKTPLSREASGEDLLRRPEIDYAMLTRLPMFSPALVDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E  +    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIDKQSRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGL 624


>gi|254509071|ref|ZP_05121174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 16]
 gi|219548004|gb|EED25026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 16]
          Length = 631

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/630 (45%), Positives = 392/630 (62%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + + +NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENADNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E +    +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDTAVGVVTQMGLKFRAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGQRTQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNESTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDARWARFNEKIDNMEKERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+    +  +I      +  +  + L  P+ +   L ++   A         E+
Sbjct: 482 ETWMNPKSEGIDALNAILKSPMSREASGEDLLRRPEMTYSQLTALDRFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYEGYIQRQQDEIEKSLRHENTKLPVDMDYSKVSGLSNEVVAKLTEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK  + K  E+ 
Sbjct: 602 SRISGITPAAISILLVHLKKQGILKKGEVA 631


>gi|328471205|gb|EGF42107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio parahaemolyticus 10329]
          Length = 631

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPIFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+ S   L  +   A         E+
Sbjct: 482 STWVNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLSEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|156972768|ref|YP_001443675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio harveyi ATCC BAA-1116]
 gi|166224337|sp|A7N0X6|MNMG_VIBHB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156524362|gb|ABU69448.1| hypothetical protein VIBHAR_00433 [Vibrio harveyi ATCC BAA-1116]
          Length = 631

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/623 (45%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +++ +  +V Q     +   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVDQDRVVGVVTQMGLKFQAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDARWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+ S  +L  +   A         E+
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSDLTQLDAFAPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLTEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|170766699|ref|ZP_02901152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia albertii TW07627]
 gi|170124137|gb|EDS93068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia albertii TW07627]
          Length = 629

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNVAQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTTPLSREASGEDLLRRPEMTYEKLTSLVPFAPALRDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|218551275|ref|YP_002385067.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Escherichia fergusonii ATCC 35469]
 gi|218358817|emb|CAQ91474.1| glucose-inhibited cell-division protein [Escherichia fergusonii
           ATCC 35469]
 gi|325499547|gb|EGC97406.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia fergusonii ECD227]
          Length = 629

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C +T 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
                   ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSTEGVAEVNAHLTSPLSREASGEDLLRRPEMTYETLTSLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|324111640|gb|EGC05621.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia fergusonii B253]
          Length = 629

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C +T 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
                   ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSTEGVAEVNAYLTSPLSREASGEDLLRRPEMTYETLTSLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|27364443|ref|NP_759971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus CMCP6]
 gi|29611746|sp|Q8DDH9|MNMG_VIBVU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27360562|gb|AAO09498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus CMCP6]
          Length = 632

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 389/620 (62%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           S  +   +  +   +   K    +  +  + L  P+ + + L S+   A         E+
Sbjct: 482 STWMNPASTGIEELNQLLKSPMNREASGEDLLRRPEMTYEQLTSLAAFAPALDDLEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPETLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|320154847|ref|YP_004187226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus MO6-24/O]
 gi|319930159|gb|ADV85023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus MO6-24/O]
          Length = 632

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 389/620 (62%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           S  +   +  +   +   K    +  +  + L  P+ + + L S+   A         E+
Sbjct: 482 STWMNPASTGIEELNQLLKSPMNREASGEDLLRRPEMTYEQLTSLAAFAPALDDLEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTKLPVDLDYSEVKGLSNEVVLKLNTAKPETLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|149190485|ref|ZP_01868756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio shilonii AK1]
 gi|148835739|gb|EDL52705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio shilonii AK1]
          Length = 631

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/630 (45%), Positives = 390/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V +        +VVLT GTFL G IHIG      GRMGD PS 
Sbjct: 122 QQSVDDLIVEQDQVRGVVTEMGLKFHSRSVVLTVGTFLGGKIHIGMESSSGGRMGDQPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
           +L     +  F   RLKTGTP R+D +++ +   E Q  D     FSFM ++  +  QI 
Sbjct: 182 ALAARLRELPFRVDRLKTGTPPRIDARSVDFSALEVQHGDNPTPVFSFMGNRNQHPTQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNESTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT     LG I E+R  RF + +      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEHAHNLGLIDEKRWSRFNEKLNNMATERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+  + + ++  K    +  +  + L  P+ +   L S+   A         E+
Sbjct: 482 ETWVNPKSEGIEALNVLLKSPISREASGEDLLRRPELNYSQLTSLDAFAPAMEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E  +    E   IP D DYS +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYEGYIQRQQDEIAKSLRHENTKIPADLDYSDVKGLSNEVVAKLTEAKPETVGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+Y+KK  + K  E  
Sbjct: 602 SRISGITPAAISILLVYLKKQGMLKKGEAA 631


>gi|269962683|ref|ZP_06177028.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832606|gb|EEZ86720.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 631

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/623 (45%), Positives = 386/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +++ +  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVDQDRVVGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+ S   L  +   A         E+
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHEHTKLPADLDYKDVKGLSNEVVAKLTEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|37681446|ref|NP_936055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio vulnificus YJ016]
 gi|56749077|sp|Q7MGG9|MNMG_VIBVY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|37200198|dbj|BAC96026.1| glucose inhibited division protein A [Vibrio vulnificus YJ016]
          Length = 632

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 388/620 (62%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRDFLENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDLIVEQDQVRGVITQMGLKFHAKAVVLTVGTFLGGKIHIGLQSSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM D+  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGDRTHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S + +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQEKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEHRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMEQERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           S  +   +  +   +   K    +  +  + L  P+ +   L S+   A         E+
Sbjct: 482 STWMNPASTGIDELNQLLKTPMNREASGEDLLRRPEMTYDQLTSLTAFAPAIDDLEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  L  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTKLPADLDYSDVKGLSNEVVLKLNTAKPETLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA+++LL+++KK
Sbjct: 602 SRISGITPAAISILLVHLKK 621


>gi|215489079|ref|YP_002331510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312967849|ref|ZP_07782061.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 2362-75]
 gi|254811510|sp|B7UMK6|MNMG_ECO27 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|215267151|emb|CAS11599.1| glucose-inhibited cell-division protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287410|gb|EFR15318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 2362-75]
          Length = 629

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|218711034|ref|YP_002418655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio splendidus LGP32]
 gi|254811523|sp|B7VN07|MNMG_VIBSL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|218324053|emb|CAV20415.1| gid A : glucose inhibited division protein A [Vibrio splendidus
           LGP32]
          Length = 631

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/623 (45%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +      F   RLKTGTP R+D +++ + + E Q  D     FSFM ++    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGNRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWTRFNEKMENMEKERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+        I      +  +  + L  P+ +   L S+             E+
Sbjct: 482 ETWINPKSEDIDQLNQILKTPMSREASGEDLLRRPEMTYSQLTSLDRFGPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDSIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+Y+KK+ +
Sbjct: 602 SRISGITPAAISILLVYLKKHGL 624


>gi|293413191|ref|ZP_06655857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B354]
 gi|291468324|gb|EFF10819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B354]
          Length = 629

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDDQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|15804341|ref|NP_290380.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 EDL933]
 gi|15833937|ref|NP_312710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. Sakai]
 gi|168753643|ref|ZP_02778650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4401]
 gi|168786584|ref|ZP_02811591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC869]
 gi|195936368|ref|ZP_03081750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4024]
 gi|208807342|ref|ZP_03249679.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814423|ref|ZP_03255752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4045]
 gi|209400287|ref|YP_002273269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326532|ref|ZP_03442616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795747|ref|YP_003080584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14359]
 gi|261225898|ref|ZP_05940179.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258943|ref|ZP_05951476.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285165|ref|YP_003501983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Escherichia coli O55:H7 str. CB9615]
 gi|21263660|sp|Q8XAY0|MNMG_ECO57 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238058367|sp|B5YXE5|MNMG_ECO5E RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12518598|gb|AAG58944.1|AE005605_12 glucose-inhibited division; chromosome replication [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364158|dbj|BAB38106.1| glucose-inhibited division protein GidA [Escherichia coli O157:H7
           str. Sakai]
 gi|189358928|gb|EDU77347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4401]
 gi|189373258|gb|EDU91674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC869]
 gi|208727143|gb|EDZ76744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735700|gb|EDZ84387.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4045]
 gi|209161687|gb|ACI39120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC4115]
 gi|209753798|gb|ACI75206.1| MioC protein [Escherichia coli]
 gi|209753800|gb|ACI75207.1| MioC protein [Escherichia coli]
 gi|209753802|gb|ACI75208.1| MioC protein [Escherichia coli]
 gi|209753804|gb|ACI75209.1| MioC protein [Escherichia coli]
 gi|209753806|gb|ACI75210.1| MioC protein [Escherichia coli]
 gi|217322753|gb|EEC31177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595147|gb|ACT74508.1| glucose-inhibited cell-division protein [Escherichia coli O157:H7
           str. TW14359]
 gi|290765038|gb|ADD58999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Escherichia coli O55:H7 str. CB9615]
 gi|320191155|gb|EFW65805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639469|gb|EFX09084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. G5101]
 gi|320644909|gb|EFX13945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H- str. 493-89]
 gi|320650175|gb|EFX18671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H- str. H 2687]
 gi|320655524|gb|EFX23459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661147|gb|EFX28583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666276|gb|EFX33282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326341577|gb|EGD65366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. 1125]
          Length = 629

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|193071616|ref|ZP_03052522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E110019]
 gi|192955080|gb|EDV85577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E110019]
          Length = 629

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|323965809|gb|EGB61260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M863]
 gi|327250893|gb|EGE62595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli STEC_7v]
          Length = 629

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L  + P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTMLAPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|322835093|ref|YP_004215120.1| glucose inhibited division protein A [Rahnella sp. Y9602]
 gi|321170294|gb|ADW75993.1| glucose inhibited division protein A [Rahnella sp. Y9602]
          Length = 629

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 395/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DA
Sbjct: 6   QFDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD P+ SL  
Sbjct: 126 EDLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +      RLKTGTP R+D +TI +    +Q  D     FSFM +   + RQI C +T
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPAPVFSFMGNVSQHPRQIPCYMT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EVYPNGISTSLPFDVQMQIVRSMQGMENAVIVRPGYAIEYDFFDPRDLKPTLESKFIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR +++ +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGMNAARSASEEEGWAPRRDQAYLGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFNEKLEMIEQERQRLRGIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
              +     I+        K  +A E L  P+ + + +  + P A         E+++I+
Sbjct: 486 NPHHAQVEEINAHLSAPLSKEASAEELLRRPEMTYELITRLSPFAPSVPDVQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 IKYEGYIARQQEEIEKQQRNENTVLPVDLDYRQVNGLSNEVIAKLNDHKPTSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LLI++KK  +
Sbjct: 606 GITPAAISILLIWLKKQGL 624


>gi|86147165|ref|ZP_01065481.1| glucose-inhibited division protein A [Vibrio sp. MED222]
 gi|85835049|gb|EAQ53191.1| glucose-inhibited division protein A [Vibrio sp. MED222]
          Length = 631

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/623 (45%), Positives = 386/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +      F   RLKTGTP R+D +++ +   E Q  D     FSFM ++    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSDLEVQHGDNPTPVFSFMGNRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWTRFNEKMENMEKERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+        I      +  +  + L  P+ +   L S+             E+
Sbjct: 482 ETWINPKSEDIDQLNQILKTPMSREASGEDLLRRPEMTYSQLTSLDRFGPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDSIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+Y+KK+ +
Sbjct: 602 SRISGITPAAISILLVYLKKHGL 624


>gi|300950658|ref|ZP_07164552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|300958750|ref|ZP_07170866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300314604|gb|EFJ64388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300450028|gb|EFK13648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|323939196|gb|EGB35409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E482]
          Length = 629

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPSLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|224510581|pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510582|pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510583|pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
 gi|224510584|pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
           Highly-Conserved Trna Modifying Enzyme
          Length = 651

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 29  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 89  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 148

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 149 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 208

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 209 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 268

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 269 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 328

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 329 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 388

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 389 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 448

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 449 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 508

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 509 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 568

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 569 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 628

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 629 VTPAAISILLVWLKKQGM 646


>gi|192988502|pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
          Length = 649

 Score =  824 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 27  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 87  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 146

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 147 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 206

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 207 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 266

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 267 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 326

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 327 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 386

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 387 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 446

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 447 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 506

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 507 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 566

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 567 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 626

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 627 VTPAAISILLVWLKKQGM 644


>gi|323975191|gb|EGB70295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TW10509]
          Length = 629

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L  + P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTMLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|251791738|ref|YP_003006459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dickeya zeae Ech1591]
 gi|247540359|gb|ACT08980.1| glucose inhibited division protein A [Dickeya zeae Ech1591]
          Length = 629

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIALSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+     +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFLGKASEHPTQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMQNARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGMVDDERWARFNEKLENIEKERQRLRDVLVH 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             +     I+        +     + L  P+     L  +   A         E+++I+ 
Sbjct: 487 PHSEGVEQINSLLKSPLSREANGEDLLRRPEMDYVQLTGLPMFAPALPDVQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|16131609|ref|NP_418197.1| 5-methylaminomethyl-2-thiouridine modification at tRNA U34
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26250487|ref|NP_756527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli CFT073]
 gi|82546099|ref|YP_410046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii Sb227]
 gi|89110266|ref|AP_004046.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. W3110]
 gi|110644082|ref|YP_671812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 536]
 gi|157155354|ref|YP_001465231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E24377A]
 gi|157163223|ref|YP_001460541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli HS]
 gi|170022222|ref|YP_001727176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli ATCC 8739]
 gi|170083242|ref|YP_001732562.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188493426|ref|ZP_03000696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Escherichia coli 53638]
 gi|191170517|ref|ZP_03032070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli F11]
 gi|193063784|ref|ZP_03044871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E22]
 gi|194428129|ref|ZP_03060673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B171]
 gi|209921222|ref|YP_002295306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SE11]
 gi|218556312|ref|YP_002389226.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Escherichia coli IAI1]
 gi|218692029|ref|YP_002400241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli ED1a]
 gi|218697467|ref|YP_002405134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 55989]
 gi|218702591|ref|YP_002410220.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli IAI39]
 gi|218707387|ref|YP_002414906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UMN026]
 gi|227883963|ref|ZP_04001768.1| glucose inhibited cell division protein A [Escherichia coli 83972]
 gi|238902832|ref|YP_002928628.1| glucose-inhibited cell-division protein [Escherichia coli BW2952]
 gi|254038960|ref|ZP_04873012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 1_1_43]
 gi|256025528|ref|ZP_05439393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia sp. 4_1_40B]
 gi|260846474|ref|YP_003224252.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O103:H2 str. 12009]
 gi|293407378|ref|ZP_06651300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1412]
 gi|293417214|ref|ZP_06659841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B185]
 gi|293464067|ref|ZP_06664481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B088]
 gi|298383120|ref|ZP_06992715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1302]
 gi|300815004|ref|ZP_07095229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300824549|ref|ZP_07104659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300896070|ref|ZP_07114629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|300916390|ref|ZP_07133130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
 gi|300925571|ref|ZP_07141444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300983872|ref|ZP_07176780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
 gi|300984345|ref|ZP_07176951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|301020855|ref|ZP_07184916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
 gi|301047564|ref|ZP_07194636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|301324958|ref|ZP_07218513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|301644417|ref|ZP_07244416.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|306815907|ref|ZP_07450045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli NC101]
 gi|307140441|ref|ZP_07499797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|307313187|ref|ZP_07592812.1| glucose inhibited division protein A [Escherichia coli W]
 gi|309795702|ref|ZP_07690117.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
 gi|312971967|ref|ZP_07786141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1827-70]
 gi|331644468|ref|ZP_08345597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|331649567|ref|ZP_08350653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M605]
 gi|331655403|ref|ZP_08356402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M718]
 gi|331665395|ref|ZP_08366296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA143]
 gi|331670592|ref|ZP_08371431.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA271]
 gi|331675225|ref|ZP_08375978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA280]
 gi|331679845|ref|ZP_08380515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H591]
 gi|331685468|ref|ZP_08386054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H299]
 gi|62288115|sp|P0A6U3|MNMG_ECOLI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62288116|sp|P0A6U4|MNMG_ECOL6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123343409|sp|Q0TAW8|MNMG_ECOL5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123558241|sp|Q31UP0|MNMG_SHIBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166989735|sp|A7ZTV2|MNMG_ECO24 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166989736|sp|A8A6K4|MNMG_ECOHS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039341|sp|B1IWZ7|MNMG_ECOLC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831506|sp|B1X9W9|MNMG_ECODH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704793|sp|B7NR43|MNMG_ECO7I RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704794|sp|B7M597|MNMG_ECO8A RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704795|sp|B7NF57|MNMG_ECOLU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238058368|sp|B6I3X8|MNMG_ECOSE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811511|sp|B7L889|MNMG_ECO55 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811512|sp|B7N2I0|MNMG_ECO81 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|259495846|sp|C4ZZ19|MNMG_ECOBW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|26110917|gb|AAN83101.1|AE016769_216 Glucose inhibited division protein A [Escherichia coli CFT073]
 gi|2367273|gb|AAC76764.1| 5-methylaminomethyl-2-thiouridine modification at tRNA U34
           [Escherichia coli str. K-12 substr. MG1655]
 gi|81247510|gb|ABB68218.1| GidA [Shigella boydii Sb227]
 gi|85676297|dbj|BAE77547.1| glucose-inhibited cell-division protein [Escherichia coli str. K12
           substr. W3110]
 gi|110345674|gb|ABG71911.1| glucose inhibited division protein A [Escherichia coli 536]
 gi|157068903|gb|ABV08158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli HS]
 gi|157077384|gb|ABV17092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E24377A]
 gi|169757150|gb|ACA79849.1| glucose inhibited division protein A [Escherichia coli ATCC 8739]
 gi|169891077|gb|ACB04784.1| glucose-inhibited cell-division protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188488625|gb|EDU63728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Escherichia coli 53638]
 gi|190909325|gb|EDV68911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli F11]
 gi|192930499|gb|EDV83106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E22]
 gi|194413887|gb|EDX30165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B171]
 gi|209914481|dbj|BAG79555.1| glucose inhibited division protein A [Escherichia coli SE11]
 gi|218354199|emb|CAV00833.1| glucose-inhibited cell-division protein [Escherichia coli 55989]
 gi|218363081|emb|CAR00719.1| glucose-inhibited cell-division protein [Escherichia coli IAI1]
 gi|218372577|emb|CAR20451.1| glucose-inhibited cell-division protein [Escherichia coli IAI39]
 gi|218429593|emb|CAR10551.2| glucose-inhibited cell-division protein [Escherichia coli ED1a]
 gi|218434484|emb|CAR15411.1| glucose-inhibited cell-division protein [Escherichia coli UMN026]
 gi|222035454|emb|CAP78199.1| tRNA uridine 5-carboxymethylaminomethyl modification [Escherichia
           coli LF82]
 gi|226838925|gb|EEH70952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 1_1_43]
 gi|227839241|gb|EEJ49707.1| glucose inhibited cell division protein A [Escherichia coli 83972]
 gi|238861321|gb|ACR63319.1| glucose-inhibited cell-division protein [Escherichia coli BW2952]
 gi|257761621|dbj|BAI33118.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O103:H2 str. 12009]
 gi|260451402|gb|ACX41824.1| glucose inhibited division protein A [Escherichia coli DH1]
 gi|281180799|dbj|BAI57129.1| glucose inhibited division protein A [Escherichia coli SE15]
 gi|284923855|emb|CBG36954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Escherichia coli
           042]
 gi|291321699|gb|EFE61135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B088]
 gi|291425669|gb|EFE98705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1412]
 gi|291431245|gb|EFF04238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B185]
 gi|298276956|gb|EFI18474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli FVEC1302]
 gi|300300550|gb|EFJ56935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|300306827|gb|EFJ61347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
 gi|300360056|gb|EFJ75926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|300398425|gb|EFJ81963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
 gi|300408381|gb|EFJ91919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|300416294|gb|EFJ99604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
 gi|300418345|gb|EFK01656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300522950|gb|EFK44019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300531896|gb|EFK52958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300848129|gb|EFK75889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|301077256|gb|EFK92062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|305850303|gb|EFM50760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli NC101]
 gi|306906870|gb|EFN37379.1| glucose inhibited division protein A [Escherichia coli W]
 gi|307555880|gb|ADN48655.1| glucose-inhibited division protein A [Escherichia coli ABU 83972]
 gi|308120581|gb|EFO57843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
 gi|309704189|emb|CBJ03536.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Escherichia coli
           ETEC H10407]
 gi|310334344|gb|EFQ00549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1827-70]
 gi|312948307|gb|ADR29134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063051|gb|ADT77378.1| glucose-inhibited cell-division protein [Escherichia coli W]
 gi|315138326|dbj|BAJ45485.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia coli DH1]
 gi|315292827|gb|EFU52179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 153-1]
 gi|315296885|gb|EFU56174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 16-3]
 gi|315618551|gb|EFU99137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 3431]
 gi|320186276|gb|EFW61012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri CDC 796-83]
 gi|320201226|gb|EFW75807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli EC4100B]
 gi|323161007|gb|EFZ46926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E128010]
 gi|323173366|gb|EFZ58995.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli LT-68]
 gi|323380887|gb|ADX53155.1| glucose inhibited division protein A [Escherichia coli KO11]
 gi|323934908|gb|EGB31286.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E1520]
 gi|323944217|gb|EGB40297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H120]
 gi|324007991|gb|EGB77210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 57-2]
 gi|324012779|gb|EGB81998.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 60-1]
 gi|324018461|gb|EGB87680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 117-3]
 gi|324115903|gb|EGC09829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli E1167]
 gi|330908054|gb|EGH36573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli AA86]
 gi|331036762|gb|EGI08988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H736]
 gi|331042065|gb|EGI14209.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M605]
 gi|331047418|gb|EGI19496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli M718]
 gi|331057905|gb|EGI29891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA143]
 gi|331062654|gb|EGI34574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA271]
 gi|331067670|gb|EGI39072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA280]
 gi|331073017|gb|EGI44342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H591]
 gi|331077839|gb|EGI49051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H299]
 gi|332089334|gb|EGI94438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii 3594-74]
 gi|332345731|gb|AEE59065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UMNK88]
          Length = 629

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|260857844|ref|YP_003231735.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O26:H11 str. 11368]
 gi|257756493|dbj|BAI27995.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O26:H11 str. 11368]
 gi|323155422|gb|EFZ41605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli EPECa14]
          Length = 629

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNVSQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|331660085|ref|ZP_08361023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA206]
 gi|331053300|gb|EGI25333.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA206]
          Length = 629

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK+ +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVEKDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|256823852|ref|YP_003147815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Kangiella koreensis DSM 16069]
 gi|256797391|gb|ACV28047.1| glucose inhibited division protein A [Kangiella koreensis DSM
           16069]
          Length = 628

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/619 (47%), Positives = 391/619 (63%), Gaps = 5/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EKYSVIVIGGGHAGTEAALASARMGVKTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMAQAIDRAGIQFRTLNASKGPAVRATRAQADRGLYRSAIREILENQPNLTIFQNA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E++ +  +  Q        +VVLT GTFL G+IHIG      GR GD PS +L 
Sbjct: 125 VVDLIVEQDKVQGVKTQMGLDFYAPSVVLTVGTFLGGLIHIGMQNHSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
           +   +  F   RLKTGTP R+D K++ +   E+Q  D  +  FSFM T     RQI C I
Sbjct: 185 DRLRELPFRVDRLKTGTPPRIDAKSVDFSVMEEQAGDNPVPTFSFMGTADQHPRQISCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +YSG I+  GPRYCPSIEDKI+RF ++N HQIF+EPEGLN+
Sbjct: 245 THTNDATHDIIRSGLDRSPMYSGVIEGVGPRYCPSIEDKIMRFSDKNSHQIFVEPEGLNS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYDY +P++L  +LETK I G
Sbjct: 305 NELYPNGISTSLPFDVQMDLVRSIKGFENAHITRPGYAIEYDYFDPRDLKASLETKFIDG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+A +    +     R  +YIGV+IDDL ++G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLIAGMNAALQVQDKEAWSPRRDQAYIGVLIDDLITRGTQE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F+   +      + +K+LV
Sbjct: 425 PYRMFTSRAEYRLILREDNADLRLTEKGRELGMVSDDRWSAFSDKKEAIERETARIKNLV 484

Query: 483 LTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQI 538
           +   + +   ++    K   +     E L  PD +   L ++     +   + V E+++I
Sbjct: 485 VQPDSPAGQQLNQQLEKPLSRAYKGEELLRRPDVTYAGLMALPGMIEQPVPAKVAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y+ Y  RQ  E +     E  ++PKD DYS +  LSNE+ +KL  +KP  + QA ++
Sbjct: 545 QIKYSGYIDRQKDEIERSLRNENTVLPKDLDYSQVKGLSNEVVQKLMNIKPETIGQAGRV 604

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G+TPAA++LLL+++KK  
Sbjct: 605 SGVTPAAISLLLVHLKKRQ 623


>gi|300940927|ref|ZP_07155453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
 gi|300454357|gb|EFK17850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
          Length = 629

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P +         E+++I+ 
Sbjct: 487 PSAEAAADVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFSPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|261250648|ref|ZP_05943223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio orientalis CIP 102891]
 gi|260939217|gb|EEX95204.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio orientalis CIP 102891]
          Length = 631

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/623 (45%), Positives = 389/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + ++ +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDQVTGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSDLEVQHGDTPAPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   D     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKDGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAQARELGLIDDARWARFNEKIDNMESERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
            + +  K+    +   +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 DIWMNPKSAGVDALNGLLKTPMAREASGEDLLRRPEITYAQLTELDAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL   KP ++  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHENTKLPLDLDYSQVKGLSNEVVAKLGEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGM 624


>gi|260870475|ref|YP_003236877.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O111:H- str. 11128]
 gi|257766831|dbj|BAI38326.1| glucose-inhibited cell-division protein GidA [Escherichia coli
           O111:H- str. 11128]
 gi|323177761|gb|EFZ63345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 1180]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLERSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|170680590|ref|YP_001746071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SMS-3-5]
 gi|205831507|sp|B1LL68|MNMG_ECOSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170518308|gb|ACB16486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli SMS-3-5]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|300902977|ref|ZP_07120920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|301305610|ref|ZP_07211700.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|300404972|gb|EFJ88510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|300839118|gb|EFK66878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|315254566|gb|EFU34534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 85-1]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHYVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|194435665|ref|ZP_03067768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 101-1]
 gi|253775624|ref|YP_003038455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163692|ref|YP_003046800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli B str. REL606]
 gi|300932376|ref|ZP_07147641.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|194425208|gb|EDX41192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli 101-1]
 gi|242379279|emb|CAQ34086.1| protein involved in a tRNA modification pathway, subunit of complex
           involved in modification of tRNA [Escherichia coli
           BL21(DE3)]
 gi|253326668|gb|ACT31270.1| glucose inhibited division protein A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975593|gb|ACT41264.1| glucose-inhibited division protein A [Escherichia coli B str.
           REL606]
 gi|253979750|gb|ACT45420.1| glucose-inhibited division protein A [Escherichia coli BL21(DE3)]
 gi|300459881|gb|EFK23374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|323971220|gb|EGB66466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli TA007]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|320174632|gb|EFW49768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae CDC 74-1112]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  DGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|74314233|ref|YP_312652.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sonnei Ss046]
 gi|123615766|sp|Q3YVP5|MNMG_SHISS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|73857710|gb|AAZ90417.1| GldA [Shigella sonnei Ss046]
 gi|323167015|gb|EFZ52754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sonnei 53G]
          Length = 629

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+ G+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLVGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|84394517|ref|ZP_00993227.1| glucose inhibited division protein A [Vibrio splendidus 12B01]
 gi|84374870|gb|EAP91807.1| glucose inhibited division protein A [Vibrio splendidus 12B01]
          Length = 631

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/623 (45%), Positives = 386/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G ST L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQSTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAFVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  +V Q     R + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQVVGVVTQMGLKFRANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +      F   RLKTGTP R+D +++ + + E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRDLPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPTPVFSFMGSRAQQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNENTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q + + ++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVKIVHSMKGFENAHIVRPGYAIEYDFFDPRDLKLTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IKGLFFAGQINGTTGYEEAAAQGLMAGLNASLFTQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKSRELGLVDDARWVRFNEKVENMEKERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+        I      +  +  + L  P+ +   L ++             E+
Sbjct: 482 ETWINPKSEDVDQLNQILKTPMSREASGEDLLRRPEMTYSQLTALDRFGPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHENTKLPADIDYSKVKGLSNEVVLKLTTAKPDSIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+Y+KK+ +
Sbjct: 602 SRISGITPAAISILLVYLKKHGL 624


>gi|326340511|gb|EGD64310.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli O157:H7 str. 1044]
          Length = 629

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYRGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|332995988|gb|EGK15615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri VA-6]
          Length = 629

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +  +  +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|323959807|gb|EGB55457.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H489]
          Length = 629

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLERSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|24115044|ref|NP_709554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 301]
 gi|30064954|ref|NP_839125.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 2457T]
 gi|81170577|sp|Q83PJ6|MNMG_SHIFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831561|sp|Q0SYT5|MNMG_SHIF8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24054304|gb|AAN45261.1| glucose-inhibited division protein GidA [Shigella flexneri 2a str.
           301]
 gi|30043215|gb|AAP18936.1| glucose-inhibited division protein GidA [Shigella flexneri 2a str.
           2457T]
 gi|281603139|gb|ADA76123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Shigella flexneri 2002017]
 gi|313647643|gb|EFS12091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2a str. 2457T]
 gi|332750750|gb|EGJ81158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 4343-70]
 gi|332750896|gb|EGJ81302.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-671]
 gi|332751672|gb|EGJ82070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2747-71]
 gi|332764002|gb|EGJ94239.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 2930-71]
 gi|332997296|gb|EGK16912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-218]
 gi|333013465|gb|EGK32836.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-304]
          Length = 629

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +  +  +Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQISGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|91213268|ref|YP_543254.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UTI89]
 gi|117626012|ref|YP_859335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli APEC O1]
 gi|218560816|ref|YP_002393729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli S88]
 gi|237703542|ref|ZP_04534023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 3_2_53FAA]
 gi|122421808|sp|Q1R4J1|MNMG_ECOUT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222932|sp|A1AHS1|MNMG_ECOK1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704792|sp|B7MGG1|MNMG_ECO45 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91074842|gb|ABE09723.1| glucose-inhibited division protein A [Escherichia coli UTI89]
 gi|115515136|gb|ABJ03211.1| glucose-inhibited division protein A [Escherichia coli APEC O1]
 gi|218367585|emb|CAR05369.1| glucose-inhibited cell-division protein [Escherichia coli S88]
 gi|226902806|gb|EEH89065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Escherichia sp. 3_2_53FAA]
 gi|294493839|gb|ADE92595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli IHE3034]
 gi|307628815|gb|ADN73119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli UM146]
 gi|315285542|gb|EFU44984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 110-3]
 gi|323949984|gb|EGB45868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H252]
 gi|323954964|gb|EGB50742.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli H263]
          Length = 629

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFAERNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|271502656|ref|YP_003335682.1| glucose inhibited division protein A [Dickeya dadantii Ech586]
 gi|270346211|gb|ACZ78976.1| glucose inhibited division protein A [Dickeya dadantii Ech586]
          Length = 629

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAIDRGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS +L + 
Sbjct: 127 DLIVENDQVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIALSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFLGNASEHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMQNARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   D     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQDGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGMVDDERWARFNEKLENIEKERQRLRDILVH 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
                   I+        +     + L  P+     L ++   A         E+++I+ 
Sbjct: 487 PNTEGVEQINRLLKSPLSREANGEDLLRRPEMDYAQLTALPMFAPALPDVQATEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|157144377|ref|YP_001451696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter koseri ATCC BAA-895]
 gi|166222924|sp|A8ACP7|MNMG_CITK8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157081582|gb|ABV11260.1| hypothetical protein CKO_00081 [Citrobacter koseri ATCC BAA-895]
          Length = 629

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG     +GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSSGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               S+  ++        +  +  + L  P+ +   L S+ P A         E+++I+ 
Sbjct: 487 PSAESAGEVNAHLTAPLSREASGEDLLRRPEMTYAQLTSLTPFAPGLDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|323496917|ref|ZP_08101945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sinaloensis DSM 21326]
 gi|323317991|gb|EGA70974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sinaloensis DSM 21326]
          Length = 631

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/623 (45%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAKAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E +    +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVENDKAVGVVTQMGLRFRAEAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           +L +   +  F   RLKTGTP R+D +T+ + + E Q  D     FSFM  +  + Q I 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSELEVQHGDNPTPVFSFMGQRSQHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQNKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDERWARFNEKVENMAKERQRLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+    +   +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 ETWMNPKSEGIDALNQLLKSPMAREASGEDLLRRPEMTYDQLTQLEAFAPAMEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY+ +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHENTKLPVDLDYAKVSGLSNEVVAKLSQAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|320193714|gb|EFW68347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli WV_060327]
          Length = 629

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/618 (47%), Positives = 398/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARIGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               EK+ +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVEKDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L S+ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTSLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|256021237|ref|ZP_05435102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella sp. D9]
 gi|332282464|ref|ZP_08394877.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Shigella sp. D9]
 gi|332104816|gb|EGJ08162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Shigella sp. D9]
          Length = 629

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I G+F
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGMF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|307823023|ref|ZP_07653253.1| glucose inhibited division protein A [Methylobacter tundripaludum
           SV96]
 gi|307735798|gb|EFO06645.1| glucose inhibited division protein A [Methylobacter tundripaludum
           SV96]
          Length = 623

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 400/621 (64%), Gaps = 4/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             R +DVIV+GGGHAG EAA  +A+ GA+T L+T    T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FRRDFDVIVVGGGHAGTEAALASARCGANTLLLTQNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M +  D  GIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q
Sbjct: 63  VDALGGVMAQAIDRGGIQFRTLNASKGPAVRATRAQADRQLYKQAVRTALENQPNLALFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V+    E + ++ +  Q         VVLTTGTFL G IHIG      GR GD  S +
Sbjct: 123 QTVSDLIVEGDRVAGVKTQMGLNFTARAVVLTTGTFLGGKIHIGLENYSGGRAGDPASIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +  F   RLKTGTP R+DG+TI + K E+Q  DE +  FSF+     + RQI C
Sbjct: 183 LAERLRELPFRIDRLKTGTPPRIDGRTIDFSKLEEQHGDEPVPVFSFIGKPEHHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRTN +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF +R+ HQIF+EPEGL
Sbjct: 243 HITRTNNKTHDIIRSGLDRSPLYSGIIEGIGPRYCPSIEDKVVRFADRDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q++F+R++ G E   I+RPGYAIEYD+ +P++L  +LETK +
Sbjct: 303 NTHEIYPNGISTSLPFDVQYEFVRSMLGFENAEIVRPGYAIEYDFFDPRDLKSSLETKHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + LF AGQ+NGTTGYEEAAAQGL+AG+N+AR    LD  C  R ++YIGVMIDDL ++G 
Sbjct: 363 NALFFAGQVNGTTGYEEAAAQGLIAGLNAARLVQGLDSWCPGRDEAYIGVMIDDLITRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F         L+  LK 
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDARWQAFEIKRASIAQLQDDLKK 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             + ++   +  +     K   +     + L  P+  ++ L S    A      V E+++
Sbjct: 483 KWVRTETAEAGQVEQYWGKPLLREANLMDLLRRPEVDVKQLLSFMDSAEDMDPQVAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E  +    +   +P+  DY+ +P LSNE+ EKL   +P  L QAS+
Sbjct: 543 IQAKYAGYIDRQQTEIDKALRYDHLRLPEVIDYNGIPGLSNEVSEKLKKQRPETLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLL+Y+KK + 
Sbjct: 603 IPGITPAAISLLLVYLKKKSA 623


>gi|88860625|ref|ZP_01135262.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas tunicata D2]
 gi|88817220|gb|EAR27038.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas tunicata D2]
          Length = 629

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 395/623 (63%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHEHFDVIVVGGGHAGTEAALASARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR+LY+ A+Q+ + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRKLYKEAIQQTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDHVVGVVTQMGLRFSSRSVVLTVGTFLGGQIHIGMESFSGGRAGDQPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
           +L     +  F   RLKTGTP R+D +T+ + K + Q  D     FSFM  +  +  QI 
Sbjct: 182 ALAKRLRELPFRVSRLKTGTPPRIDARTVDFSKMQIQPGDTPTPVFSFMGKQSDHPTQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKIMRFADKDRHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQLQIVQSITGFENAHICRPGYAIEYDFFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG+N+A +    D     R ++Y GV+IDDL + G
Sbjct: 362 ISGLFFAGQINGTTGYEEAAAQGLIAGMNAALQVQGKDAWTPRRDEAYAGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   I+E       LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVNDERWAAFNIKIEEIEKEAQRLK 481

Query: 480 SLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIER 535
            + +     +  +  ++      +  +  E +  P+ +   L  I    +   +   +E+
Sbjct: 482 EVWIHKDHPQLEAVNNLLKAPLSREASLEELIRRPEVTYNELVKIEGLGSESTNEQALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  RQ  E  +    E  L+P D+DY+++  LSNE+  KLS ++P  + QA
Sbjct: 542 VEIQIKYAGYIARQQEEIDKQLRHEMTLLPADYDYAAVSGLSNEVVAKLSDVRPQTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LLL+Y+KK  +
Sbjct: 602 SRISGITPAAISLLLVYLKKQGL 624


>gi|307133313|ref|YP_003885329.1| glucose-inhibited cell-division protein [Dickeya dadantii 3937]
 gi|306530842|gb|ADN00773.1| glucose-inhibited cell-division protein [Dickeya dadantii 3937]
          Length = 629

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 388/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAHAIDRAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL + 
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSISLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D+ +  FSF+     +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAPQHGDDPMPVFSFLGKAGEHPTQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+    I+RPGYAIEYDY +P++L PTLE+K I  LF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMDGMANARIVRPGYAIEYDYFDPRDLKPTLESKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAFDQEGWTPRRDQAYIGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ +++ 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAMGRELGMVDDERWARFNEKLENIEKERQRLRDVLVH 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +      I+        +     E L  P+     L  +   A     +   E+++I+ 
Sbjct: 487 PQTEGVEQINSLLKSPLSREANGEELLRRPEMDYAQLTGLAMFAPALSDAEAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPADLDYRQVTGLSNEVIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|312882250|ref|ZP_07741996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370094|gb|EFP97600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 632

 Score =  821 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/631 (44%), Positives = 394/631 (62%), Gaps = 7/631 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G+M +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGIMAKAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYIRHALENAANLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++ +  ++ Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRVIGVITQMGLKFFAQSVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D+    FSF+  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSGLEVQHGDDPAPVFSFLGHRAQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CFITHTNEATHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKSSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q   +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVDIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQGKEGWNPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R +RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEQARELGLVDDERWQRFNQKIENIELERQRLK 481

Query: 480 SLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           ++ +  K+     ++        +  +  + L  P+ +   L  +   +         E+
Sbjct: 482 NIWMNPKSEGIADLNQYLKSPMVREASGEDLLRRPELNYLQLTKLAAFSPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P DFDY  +  LSNE+  KL+  KP +L  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTKLPLDFDYQLVKGLSNEVVSKLNESKPESLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV--KLNEIV 624
           S+I G+TPAA+++LL+++KK  +  K  E+V
Sbjct: 602 SRISGVTPAAISILLVHLKKQGMLKKGEEVV 632


>gi|323189526|gb|EFZ74806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli RN587/1]
          Length = 629

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  + AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIEQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P +         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFSPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|227113932|ref|ZP_03827588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 629

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 S--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
              + L   +   K    +     E L  P+     L ++   A         E+++I+ 
Sbjct: 487 PQSEQLDQVNSLLKTPLSREANGEELLRRPEVDYVQLTALPLFAPGLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENALLPADLDYKQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|332998035|gb|EGK17640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-272]
 gi|333013715|gb|EGK33080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri K-227]
          Length = 629

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR  YR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWVRFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDYKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|317494634|ref|ZP_07953046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917236|gb|EFV38583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 629

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/618 (46%), Positives = 387/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDHGGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD P+ +L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +     Q+ D     FSFM +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAPQYGDNPSPVFSFMGNASQHPEQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMEGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRFANEDEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R   F + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAIGRELGLVDDVRWTHFNQKLENIERERQRLREIWVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIES 540
             +     ++        +     + L  P+     L  + P A         E+++I+ 
Sbjct: 487 PNSEQVAELNTLLKAPLSREANGEDLLRRPEIDYTKLTQLAPFAPALDDEKAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIEKHLRNENTLLPADLDYSLVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|82779067|ref|YP_405416.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae Sd197]
 gi|309784452|ref|ZP_07679091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1617]
 gi|123561167|sp|Q329T0|MNMG_SHIDS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81243215|gb|ABB63925.1| glucose-inhibited division [Shigella dysenteriae Sd197]
 gi|308927959|gb|EFP73427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1617]
          Length = 629

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K + GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFLQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTRVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|163803608|ref|ZP_02197474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. AND4]
 gi|159172602|gb|EDP57460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. AND4]
          Length = 631

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/623 (44%), Positives = 383/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V      ++ +  +V Q       + VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVNQDRVVGVVTQMGLKFHANAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
           +L +   +  F   RLKTGTP R+D +++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSVLEAQHGDNPTPVFSFMGKREHQPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G    +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFGNAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLHSQGKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +   +     ++        +  +  + L  P+     L  +   A         E+
Sbjct: 482 STWMNPNSAGIDELNKLLKTPMAREASGEDLLRRPEIVYSTLTQLDAFAPALEDQQASEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQDEIEKSLRHEHTKLPTDLDYQDVKGLSNEVVAKLTEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|261823729|ref|YP_003261835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium wasabiae WPP163]
 gi|261607742|gb|ACX90228.1| glucose inhibited division protein A [Pectobacterium wasabiae
           WPP163]
          Length = 629

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKHVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDERWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            ++     I+        +     E L  P+     L ++   +         E+++I+ 
Sbjct: 487 PQSEQLDQINSLLKTPLSREANGEELLRRPEVDYLQLTALPLFSPGLADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENALLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|332084593|gb|EGI89787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii 5216-82]
          Length = 629

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+D L
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDVL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|187732565|ref|YP_001882422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii CDC 3083-94]
 gi|238691693|sp|B2TUN4|MNMG_SHIB3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187429557|gb|ACD08831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii CDC 3083-94]
          Length = 629

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q     +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGGNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|302390790|ref|YP_003826611.1| glucose inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
 gi|302201418|gb|ADL08988.1| glucose inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
          Length = 627

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 389/620 (62%), Gaps = 3/620 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G GHAGCEAA  +A+LG  T +      +I  M CNP+IGG  KGHLVREIDAL
Sbjct: 8   YDVAVVGAGHAGCEAALASARLGMKTVVFAINLDSIALMPCNPSIGGPAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN KKGPAVR  R QAD++ Y+ +M+  +  Q+NLD++QGEV 
Sbjct: 68  GGEMGKNIDKTLIQMRLLNTKKGPAVRALRAQADKKAYQFSMKYTLEKQQNLDIVQGEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V +   +     V+LTTG +LRG I IG +    G  G  P+N L   
Sbjct: 128 RVLVEGGRVKGVVTKTGGVYYARAVILTTGVYLRGRIIIGDVSYSGGPNGLFPANELSKC 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                F+ GR KTGTP R+   +I + K  +Q  DE +IPFS+ T+ I   QI C +T T
Sbjct: 188 LEALGFELGRFKTGTPPRVHRDSIDFSKMIEQPGDEVIIPFSYETESIKRPQISCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH II +N+  + +Y+GDIK  GPRYCPSIE KIV F E+  HQ+F+EPEG NT  +
Sbjct: 248 NEKTHEIIRKNLYRAPLYTGDIKGVGPRYCPSIEVKIVNFPEKESHQVFVEPEGENTCEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q + +RTI GLE V ++RPGYAIEYDY+ P +L  TLETK+I GL++
Sbjct: 308 YLQGVSTSLPEDVQVELLRTIRGLENVKMMRPGYAIEYDYVIPTQLKLTLETKEIEGLYM 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL+AGIN+A K  + + +   R+D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAAQGLIAGINAALKLKERESLVLGRSDAYIGVLIDDLVTKGTDEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT IG ++G I E R +RF K  +        L+S  +T 
Sbjct: 428 MLTSRAEYRLLLRHDNADMRLTEIGYRVGLISEERYERFLKKKKMIEEEIERLRSTKITP 487

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               N +   I         T  + L  P+     L ++ P+  +    VIE+++I ++Y
Sbjct: 488 TAEVNKALEEIGTAPLATPATLEDILKRPEIDYAALKALDPERPELPPEVIEQVEIMTAY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ+ + +  +  E + IP D DY  +  L  E +EKL  ++P ++ QAS+I G+ 
Sbjct: 548 DGYIKRQLKQVENFRKMENKRIPDDIDYDKIHGLRTEAREKLKKIRPASIGQASRISGVN 607

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA + +LLIY++    +  +
Sbjct: 608 PADITILLIYLESEKRRREK 627


>gi|227327865|ref|ZP_03831889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 629

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K I GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            ++     I+        +     E L  P+     L ++   A         E+++I+ 
Sbjct: 487 PQSEQLDQINSLLKTPLSREANGEELLRRPEVDYVQLTALPLFAPGLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENALLPADLDYKQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|50123437|ref|YP_052604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pectobacterium atrosepticum SCRI1043]
 gi|81170541|sp|Q6CYI6|MNMG_ERWCT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49613963|emb|CAG77416.1| glucose inhibited division protein A [Pectobacterium atrosepticum
           SCRI1043]
          Length = 629

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLPQQHGDNPMPVFSFLGNAGQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMAGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLSADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGMVDDHRWARFNEKLENIEKERQRLRDIHVH 486

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            ++       S+      +     E L  P+     L ++   A         E+++I+ 
Sbjct: 487 PQSELLDQVNSLLKTPLSREANGEELLRRPEVDYAQLTALPLFAPGLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENALLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|320180077|gb|EFW55019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella boydii ATCC 9905]
          Length = 629

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTRVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|262392793|ref|YP_003284647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. Ex25]
 gi|262336387|gb|ACY50182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. Ex25]
          Length = 631

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/623 (45%), Positives = 384/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R  RF + +      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDNVRWARFNEKLNNMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S  +  K+     ++        +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 STWMNPKSEGVDELNKLLKTPMAREASGEDLLRRPEITYSQLTQLEAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|91229124|ref|ZP_01262897.1| glucose-inhibited division protein A [Vibrio alginolyticus 12G01]
 gi|269965286|ref|ZP_06179407.1| glucose-inhibited division protein A [Vibrio alginolyticus 40B]
 gi|91187436|gb|EAS73779.1| glucose-inhibited division protein A [Vibrio alginolyticus 12G01]
 gi|269830087|gb|EEZ84315.1| glucose-inhibited division protein A [Vibrio alginolyticus 40B]
          Length = 631

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/623 (45%), Positives = 385/623 (61%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHENFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKINNMETERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           +  +  K+     ++        +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 ATWMNPKSEGVDELNKLLKTPMAREASGEDLLRRPEITYSQLTQLEAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  A
Sbjct: 542 VEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGL 624


>gi|253690608|ref|YP_003019798.1| glucose inhibited division protein A [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495849|sp|C6DJG3|MNMG_PECCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|251757186|gb|ACT15262.1| glucose inhibited division protein A [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 629

 Score =  819 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+
Sbjct: 7   FDVIVIGGGHAGTEAAMASARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM R  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMARAVDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRTALENQPNLTIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFLGNASQHPAQMPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE K + GLF
Sbjct: 307 IYPNGISTSLPFDVQWQIVRSMTGMENARIVRPGYAIEYDFFDPRDLKPTLENKFVHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGMLAGLNAARLAADKEGWSPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDHRWARFNEKLESIEKERQRLRDIHIH 486

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            ++       S+      +     E L  P+     L ++   A         E+++I+ 
Sbjct: 487 PQSELLDQVNSLLKTPLSREANGEELLRRPEVDYVQLTALPLFAPGLTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPADLDYKQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLI++KK  +
Sbjct: 607 ITPAAISILLIWLKKQGL 624


>gi|317050169|ref|YP_004117817.1| glucose inhibited division protein A [Pantoea sp. At-9b]
 gi|316951786|gb|ADU71261.1| glucose inhibited division protein A [Pantoea sp. At-9b]
          Length = 629

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/618 (47%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH    +G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHDIDKLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMATAIDKAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
                   GRLKTGTP R+D +TI + +   Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRALPLRVGRLKTGTPPRIDARTIDFSQLAPQHGDNPMPVFSFMGNVSQHPQQVPCWITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYMGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R  R+ + ++     R  L+ L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGREMGLVDDARWARYNQKLEAIEQERQRLRDLWVH 486

Query: 485 SKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            K+ +     SI      K  +  + L  P+ +   L S+             E+++I+ 
Sbjct: 487 PKSENVDEVNSILSAPLTKEASGEDLLRRPEMTYALLTSLNSYGPVLADEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQQRNENTLLPVDLDYRQVSGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|323492998|ref|ZP_08098134.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio brasiliensis LMG 20546]
 gi|323312734|gb|EGA65862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio brasiliensis LMG 20546]
          Length = 631

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 392/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDQAVGVVTQMGLRFYAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM ++  + RQI 
Sbjct: 182 ALADRLREMPFRVDRLKTGTPPRIDARSVDFSELEVQHGDNPAPVFSFMGNRSQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEQTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LDTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTAQARELGLIDDARWARFNQKIDNMETERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
            + +  K+  + + +   K    +  +  + L  P+ S   L  +   A         E+
Sbjct: 482 EIWMNPKSDGVEALNQLLKTPMAREASGEDLLRRPEISYSQLTELEAFAPALEDQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DYS++  LSNE+  KLS  KP  L  A
Sbjct: 542 VEIQVKYEGYIKRQQEEIEKSLRHEHTKLPAELDYSAVKGLSNEVVAKLSEAKPETLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK+ +
Sbjct: 602 SRISGITPAAISILLVHLKKHGM 624


>gi|309972266|gb|ADO95467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R2846]
          Length = 629

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/622 (47%), Positives = 392/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF K ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNKKMENIEQERQRLRN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|168239645|ref|ZP_02664703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737365|ref|YP_002116817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|238690703|sp|B4TN42|MNMG_SALSV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|194712867|gb|ACF92088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287686|gb|EDY27077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 629

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNTHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|148827804|ref|YP_001292557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittGG]
 gi|166222938|sp|A5UHB8|MNMG_HAEIG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148719046|gb|ABR00174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittGG]
          Length = 629

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVNRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDY+ +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYNKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|16272526|ref|NP_438740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae Rd KW20]
 gi|260581443|ref|ZP_05849255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae RdAW]
 gi|1169896|sp|P44763|MNMG_HAEIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1573570|gb|AAC22240.1| glucose inhibited division protein (gidA) [Haemophilus influenzae
           Rd KW20]
 gi|260091889|gb|EEW75840.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae RdAW]
          Length = 629

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R Q+DR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQSDRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     R  +V+LT GTFL G IHIG      GR GDS S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLTFRAKSVILTAGTFLAGKIHIGLENYEGGRAGDSASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|16767158|ref|NP_462773.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167994881|ref|ZP_02575971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234385|ref|ZP_02659443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168245184|ref|ZP_02670116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168263227|ref|ZP_02685200.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168464788|ref|ZP_02698680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168823141|ref|ZP_02835141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194445542|ref|YP_002043122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194450875|ref|YP_002047905.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194470389|ref|ZP_03076373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197250701|ref|YP_002148811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197265255|ref|ZP_03165329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200388594|ref|ZP_03215206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928647|ref|ZP_03219846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238913127|ref|ZP_04656964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|21263669|sp|Q8ZKW6|MNMG_SALTY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690004|sp|B5EZ07|MNMG_SALA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690240|sp|B4TAY3|MNMG_SALHS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238693556|sp|B4SYE2|MNMG_SALNS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16422448|gb|AAL22732.1| associated with glucose-inhibited division [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194404205|gb|ACF64427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409179|gb|ACF69398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194456753|gb|EDX45592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195632101|gb|EDX50585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197214404|gb|ACH51801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197243510|gb|EDY26130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199605692|gb|EDZ04237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322080|gb|EDZ07278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205327320|gb|EDZ14084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205331678|gb|EDZ18442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336051|gb|EDZ22815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205340555|gb|EDZ27319.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205348292|gb|EDZ34923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261249013|emb|CBG26871.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996162|gb|ACY91047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301160406|emb|CBW19932.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915005|dbj|BAJ38979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320088299|emb|CBY98060.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           Glucose-inhibited division protein A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222172|gb|EFX47245.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322617213|gb|EFY14118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619099|gb|EFY15985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322625166|gb|EFY21994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630217|gb|EFY26988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634358|gb|EFY31092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322635242|gb|EFY31957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642881|gb|EFY39466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645085|gb|EFY41615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650434|gb|EFY46846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653626|gb|EFY49953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661546|gb|EFY57769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322661628|gb|EFY57847.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669790|gb|EFY65932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671983|gb|EFY68102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675006|gb|EFY71092.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683696|gb|EFY79709.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686083|gb|EFY82068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323132236|gb|ADX19666.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192000|gb|EFZ77237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200494|gb|EFZ85572.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202723|gb|EFZ87760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208300|gb|EFZ93241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211735|gb|EFZ96568.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218597|gb|EGA03304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219998|gb|EGA04468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224769|gb|EGA09034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232523|gb|EGA16625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235298|gb|EGA19383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241086|gb|EGA25123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241365|gb|EGA25397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248595|gb|EGA32525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252106|gb|EGA35966.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323258590|gb|EGA42253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262378|gb|EGA45936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323268215|gb|EGA51691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270629|gb|EGA54074.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|332990723|gb|AEF09706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 629

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|269140865|ref|YP_003297566.1| glucose-inhibited cell division protein A (tRNA uridine
           5-carboxymethylaminomethyl modification enzyme)
           [Edwardsiella tarda EIB202]
 gi|267986526|gb|ACY86355.1| glucose-inhibited cell division protein A (tRNA uridine
           5-carboxymethylaminomethyl modification enzyme)
           [Edwardsiella tarda EIB202]
 gi|304560623|gb|ADM43287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda FL6-60]
          Length = 629

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/618 (46%), Positives = 391/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI +    +Q  D     FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSVLAQQHGDNPAPVFSFLGDASQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL+++ 
Sbjct: 247 TNEHTHEVIRSNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLSSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMEGMQNTRIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +  +D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAADVDGWAPRRDEAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R  +F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDVRWAQFNQKLENMERERQRLRETWVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +   +  ++        +  +  + L  P+     L S+ P +         E+++I+ 
Sbjct: 487 PQGEQAAEVNALLKTPLSREASGEDLLRRPEMDYATLTSLSPFSPPLADRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYQGYIARQQDEIEKQQRNENTRLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|319775496|ref|YP_004137984.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3047]
 gi|329122463|ref|ZP_08251049.1| glucose inhibited division protein A [Haemophilus aegyptius ATCC
           11116]
 gi|317450087|emb|CBY86301.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3047]
 gi|327473217|gb|EGF18638.1| glucose inhibited division protein A [Haemophilus aegyptius ATCC
           11116]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     R  +V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLTFRAKSVILTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILTKQHGDEVLPMFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGMIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|152977682|ref|YP_001377199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189039328|sp|A7GVP6|MNMG_BACCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152026434|gb|ABS24204.1| glucose inhibited division protein A [Bacillus cytotoxicus NVH
           391-98]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/619 (45%), Positives = 399/619 (64%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSNTIDYSKTEIQPGDDQPRAFSFETTKFILDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I +N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDKNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +R+++  ++    ++ L+ +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIPEERYERYSQKKEQIEQEKARLEGIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGIR--ASDLLRRPEMTYEHIRLLAPSELEINDEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKEVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|56415742|ref|YP_152817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197364670|ref|YP_002144307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81170575|sp|Q5PJX1|MNMG_SALPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690766|sp|B5BIP5|MNMG_SALPK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56129999|gb|AAV79505.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096147|emb|CAR61743.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKERWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|198242041|ref|YP_002217822.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205354543|ref|YP_002228344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859097|ref|YP_002245748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|238690338|sp|B5FN44|MNMG_SALDC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690396|sp|B5QVE1|MNMG_SALEP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690535|sp|B5RFV4|MNMG_SALG2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|197936557|gb|ACH73890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205274324|emb|CAR39348.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710900|emb|CAR35264.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326625609|gb|EGE31954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|326629678|gb|EGE36021.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|229164434|ref|ZP_04292362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus R309803]
 gi|228619039|gb|EEK75937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus R309803]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I + R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKDERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +T  S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNTGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPEDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|194431209|ref|ZP_03063502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1012]
 gi|194420664|gb|EDX36740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 1012]
 gi|332084728|gb|EGI89914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella dysenteriae 155-74]
          Length = 629

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 397/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q +L + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPDLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFRVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVICSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|332983462|ref|YP_004464903.1| glucose inhibited division protein A [Mahella australiensis 50-1
           BON]
 gi|332701140|gb|AEE98081.1| glucose inhibited division protein A [Mahella australiensis 50-1
           BON]
          Length = 624

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/619 (44%), Positives = 386/619 (62%), Gaps = 4/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YDVIV+G GHAGCEAA  +A++G  T ++     +I  M+CNP+IGG  KGHLVREID
Sbjct: 6   NTYDVIVVGAGHAGCEAALASARMGCKTLVVAINLDSIAMMACNPSIGGTSKGHLVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG   D   IQ R+LN  KGPAV   R Q D++ Y+  M++ +  Q+NLDV Q E
Sbjct: 66  ALGGQMGITTDKTAIQVRMLNTSKGPAVYSLRAQIDKKAYQAVMKQTLEQQDNLDVKQAE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+  +  +V    ++ R   V+LTTG +L G + IG++   +G  G  P+  L 
Sbjct: 126 VVRLLVEEGAVRGVVTHTGAIYRAKAVILTTGVYLNGRVIIGEVSYSSGPNGMFPATHLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
              +       R KTGTPAR+ G++I + K   Q  DE  IPFSFM DK+  +Q+ C +T
Sbjct: 186 QDLLLLGIKLQRFKTGTPARVAGRSIDFSKMALQLGDEPPIPFSFMDDKLDAKQVPCHLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  S ++SGDIK  GPRYCPSIEDK+VRF ++  HQIF+EPEGLNTD
Sbjct: 246 YTNERTHEIIRRNLHRSPLFSGDIKGVGPRYCPSIEDKVVRFADKPSHQIFIEPEGLNTD 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q + +R+I GLE V ++RP YAIEYD I+P +L  +LE K I GL
Sbjct: 306 EMYVQGMSSSLPEDVQIEMLRSIAGLEHVEVMRPAYAIEYDCIDPTQLKLSLEIKHIRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQING++GYEEAAAQG++AGIN+AR       +   R+ +YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGSSGYEEAAAQGIMAGINAARMVQGKPPVILDRSQAYIGVLIDDLVTKGTAEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLTPIG ++G  G  R +R+     +       LKS ++
Sbjct: 426 YRMMTSRAEYRLLLRQDNADMRLTPIGYEIGLAGAERYERYLLKKDQVESELERLKSTII 485

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIE 539
                 +     +S +      T Y+ L  P+ S   L  I  D         IE+++I 
Sbjct: 486 APDTEVNELLGKLSSQPIKTGVTLYDLLKRPEISYAALAPIDKDRPSGLLQQAIEQVEIN 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM++ +  K  E   +P D DY+++  L  E ++KL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIARQMMQIERFKKMEDHKLPDDIDYNAIKGLRIEARQKLDRIRPQSVGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G++PA +++LLIY+K++ +
Sbjct: 606 GVSPADISVLLIYLKQHGL 624


>gi|43257|emb|CAA25773.1| unnamed protein product [Escherichia coli]
 gi|290590|gb|AAA62093.1| glucose inhibited division protein [Escherichia coli]
          Length = 628

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/618 (47%), Positives = 397/618 (64%), Gaps = 6/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLL-RPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 546 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 606 VTPAAISILLVWLKKQGM 623


>gi|196041933|ref|ZP_03109220.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus NVH0597-99]
 gi|196027188|gb|EDX65808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus NVH0597-99]
          Length = 629

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|324329434|gb|ADY24694.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 629

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIRLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|42784679|ref|NP_981926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus ATCC 10987]
 gi|206975823|ref|ZP_03236734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus H3081.97]
 gi|217962975|ref|YP_002341553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH187]
 gi|222098960|ref|YP_002533018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Bacillus cereus Q1]
 gi|229142232|ref|ZP_04270756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST26]
 gi|229199693|ref|ZP_04326336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1293]
 gi|81170515|sp|Q72WU4|MNMG_BACC1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42740611|gb|AAS44534.1| glucose-inhibited division protein A [Bacillus cereus ATCC 10987]
 gi|206745917|gb|EDZ57313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus H3081.97]
 gi|217067770|gb|ACJ82020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH187]
 gi|221243019|gb|ACM15729.1| glucose-inhibited division protein A [Bacillus cereus Q1]
 gi|228583788|gb|EEK41963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1293]
 gi|228641250|gb|EEK97557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST26]
          Length = 629

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|145629760|ref|ZP_01785555.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.1-21]
 gi|145638508|ref|ZP_01794117.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittII]
 gi|144977999|gb|EDJ87783.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.1-21]
 gi|145272103|gb|EDK12011.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittII]
 gi|309750012|gb|ADO79996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R2866]
          Length = 629

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/622 (47%), Positives = 392/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      +++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIKQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|161616997|ref|YP_001590962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|189039355|sp|A9MXB8|MNMG_SALPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161366361|gb|ABX70129.1| hypothetical protein SPAB_04818 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 629

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDSVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|16762452|ref|NP_458069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29143940|ref|NP_807282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052661|ref|ZP_03345539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213427461|ref|ZP_03360211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213649867|ref|ZP_03379920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|21263667|sp|Q8Z2Q7|MNMG_SALTI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25300013|pir||AE0953 glucose inhibited division protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504757|emb|CAD03121.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139576|gb|AAO71142.1| glucose inhibited division protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 629

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|229159043|ref|ZP_04287099.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 4342]
 gi|228624462|gb|EEK81233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 4342]
          Length = 629

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|300118815|ref|ZP_07056535.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus SJ1]
 gi|298723783|gb|EFI64505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus SJ1]
          Length = 629

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLITEDRYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|52145291|ref|YP_086748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus E33L]
 gi|196045512|ref|ZP_03112743.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB108]
 gi|229094594|ref|ZP_04225661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-42]
 gi|81824093|sp|Q630B9|MNMG_BACCZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51978760|gb|AAU20310.1| glucose-inhibited division protein A [Bacillus cereus E33L]
 gi|196023719|gb|EDX62395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB108]
 gi|228688841|gb|EEL42672.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-42]
          Length = 629

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|47568682|ref|ZP_00239379.1| glucose inhibited division protein A [Bacillus cereus G9241]
 gi|228988712|ref|ZP_04148797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554670|gb|EAL13024.1| glucose inhibited division protein A [Bacillus cereus G9241]
 gi|228771024|gb|EEM19505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 629

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSVGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|260583255|ref|ZP_05851032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae NT127]
 gi|260093708|gb|EEW77619.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae NT127]
          Length = 629

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKSAIEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|228924228|ref|ZP_04087499.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835446|gb|EEM80816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|225867464|ref|YP_002752842.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB102]
 gi|225788645|gb|ACO28862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus 03BB102]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G+LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGELKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKEDRYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|289826268|ref|ZP_06545380.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 627

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/623 (46%), Positives = 394/623 (63%), Gaps = 6/623 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNT 617
           AS+I G+TPAA+++LL+++KK  
Sbjct: 601 ASRISGVTPAAISILLVWLKKTR 623


>gi|30265501|ref|NP_847878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Ames]
 gi|47531069|ref|YP_022418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188320|ref|YP_031573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Sterne]
 gi|49481136|ref|YP_039473.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65317464|ref|ZP_00390423.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Bacillus anthracis str. A2012]
 gi|118480510|ref|YP_897661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis str. Al Hakam]
 gi|165873038|ref|ZP_02217659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0488]
 gi|167635097|ref|ZP_02393414.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0442]
 gi|167641741|ref|ZP_02399984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0193]
 gi|170689473|ref|ZP_02880663.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0465]
 gi|170707574|ref|ZP_02898027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0389]
 gi|177655265|ref|ZP_02936819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0174]
 gi|227818252|ref|YP_002818261.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CDC 684]
 gi|228918095|ref|ZP_04081623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930489|ref|ZP_04093489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228936763|ref|ZP_04099554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229124986|ref|ZP_04254160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 95/8201]
 gi|229187712|ref|ZP_04314848.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BGSC 6E1]
 gi|229600914|ref|YP_002869692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0248]
 gi|254687076|ref|ZP_05150934.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724141|ref|ZP_05185926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A1055]
 gi|254735158|ref|ZP_05192868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Western North America USA6153]
 gi|254742133|ref|ZP_05199820.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Kruger B]
 gi|254755957|ref|ZP_05207989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Vollum]
 gi|254761363|ref|ZP_05213385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Australia 94]
 gi|301056957|ref|YP_003795168.1| glucose-inhibited division protein A [Bacillus anthracis CI]
 gi|38372308|sp|Q81JH3|MNMG_BACAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170518|sp|Q6HAF3|MNMG_BACHK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222907|sp|A0RLR1|MNMG_BACAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|30260179|gb|AAP29364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. Ames]
 gi|47506217|gb|AAT34893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182247|gb|AAT57623.1| glucose-inhibited division protein A [Bacillus anthracis str.
           Sterne]
 gi|49332692|gb|AAT63338.1| glucose-inhibited division protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118419735|gb|ABK88154.1| glucose-inhibited division protein A [Bacillus thuringiensis str.
           Al Hakam]
 gi|164711250|gb|EDR16806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0488]
 gi|167510295|gb|EDR85698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0193]
 gi|167529571|gb|EDR92321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0442]
 gi|170127570|gb|EDS96444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0389]
 gi|170666575|gb|EDT17348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0465]
 gi|172080192|gb|EDT65284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0174]
 gi|227002905|gb|ACP12648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. CDC 684]
 gi|228595780|gb|EEK53464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BGSC 6E1]
 gi|228658487|gb|EEL14153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 95/8201]
 gi|228822972|gb|EEM68813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829208|gb|EEM74845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228841575|gb|EEM86691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229265322|gb|ACQ46959.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis str. A0248]
 gi|300379126|gb|ADK08030.1| glucose-inhibited division protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|91795108|ref|YP_564759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella denitrificans OS217]
 gi|123165631|sp|Q12HP0|MNMG_SHEDO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91717110|gb|ABE57036.1| glucose inhibited division protein A [Shewanella denitrificans
           OS217]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 388/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + SQ NL + Q
Sbjct: 63  IDALGGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQQILQSQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N +  +V Q        TVVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLVVENNQVVGVVTQMGLAFESPTVVLTTGTFLSGKIHIGMQNYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L N   +     GRLKTGTP R+D  +I + +  +Q  D  L   SF+ +   + RQI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANSIDFSQMTEQKGDTPLPVMSFVGNVDQHPRQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 HITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKTSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 STNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKETWCPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F +  +        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVNDDRWAKFTEKRESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++ +      +  +  + L  P+   Q L S+             E++
Sbjct: 483 QWIHPNSPLLGVLNPELNTPISREASFEDLLRRPEMDYQKLMSLEGFGPGLEDPSAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIRHENSLLPLDLDYQEVPGLSNEVIAKLNNHKPDTIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|94501613|ref|ZP_01308130.1| glucose-inhibited division protein A [Oceanobacter sp. RED65]
 gi|94426296|gb|EAT11287.1| glucose-inhibited division protein A [Oceanobacter sp. RED65]
          Length = 628

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/618 (47%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EA   AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EID
Sbjct: 5   KRYDVIVVGGGHAGTEACLAAARMGCKTLLLTHSIETVGVMSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG M R  D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +Q NL+  Q  
Sbjct: 65  AFDGAMARATDRGGIQFRTLNSRKGPAVRATRAQADRALYKAAIREIVENQPNLEFFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q    I   +VVLTTGTFL GVIHIG      GR GD PSN+L 
Sbjct: 125 CDDLIVEGDTVKGVVTQAGIKIYADSVVLTTGTFLGGVIHIGMDNYQGGRAGDPPSNNLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +  F+ GRLKTGTPAR+D +++ +   ++Q  D+     SFM ++  + Q I+C I
Sbjct: 185 KRLRELPFNVGRLKTGTPARIDARSVDFSVMQRQPGDDVTPIMSFMGNREEHPQQIDCFI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL+T
Sbjct: 245 THTNEQTHDIIRAGLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFVEPEGLST 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + I ++ G E  +I RPGYAIEYD+ NP++L  +LETK + G
Sbjct: 305 HELYPNGISTSLPFDVQVEMIHSMKGFENAHITRPGYAIEYDFFNPQDLKHSLETKFMQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N+A +S + D     R ++YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLLAGTNAALRSMEKDAWYPRRDEAYIGVLVDDLITMGTNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F +  +        LKS  
Sbjct: 425 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVGDERWAAFCEKKEAIEQEEQRLKSTW 484

Query: 483 LTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +             S     +  +  + L  P+ +  ++ ++  +       V E++QI 
Sbjct: 485 ILPNTEEGDVVNGFSKTPITREYSLMDLLKRPEITYSDIANLKGEPVA-DPQVSEQVQIM 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ+ E ++++  E  L+P D D+S +  LSNE+ +KLS ++P  L  AS+I+
Sbjct: 544 AKYEGYINRQLEEIEQMRRYEDTLLPADLDFSKVGGLSNEIVQKLSEIQPETLGTASRIQ 603

Query: 600 GMTPAALNLLLIYIKKNT 617
           G+TPAA++ LLIY+KK+ 
Sbjct: 604 GVTPAAISQLLIYLKKHH 621


>gi|152972650|ref|YP_001337796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|262040354|ref|ZP_06013600.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330005171|ref|ZP_08305133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. MS 92-3]
 gi|205831537|sp|A6TG45|MNMG_KLEP7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150957499|gb|ABR79529.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259042295|gb|EEW43320.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536377|gb|EGF62736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. MS 92-3]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +  +  S+  ++        +  +  + L  P+ + + L  + P           E
Sbjct: 481 KSTWVNPQAESANEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|228949205|ref|ZP_04111473.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228810488|gb|EEM56841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEKEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|238921734|ref|YP_002935249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella ictaluri 93-146]
 gi|238871303|gb|ACR71014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Edwardsiella ictaluri 93-146]
          Length = 629

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/618 (46%), Positives = 391/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRILYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI +    +Q  D     FSF+ +   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDFSVLAQQHGDNPAPVFSFLGEASQHPRQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL+++ 
Sbjct: 247 TNEHTHEVIRGNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLSSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMAGMQNTRIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R +  L+     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAADLEGWMPRRDEAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R  +F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDVRWAQFNQKLENMERERQRLRETWVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            ++  +  ++        +  +  + L  P+     L S+ P           E+++I+ 
Sbjct: 487 PQSERAAEVNVLLKTPLSREASGEDLLRRPEMDYATLTSLSPFYPPLADRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYQGYIARQQDEIEKQLRNENTLLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|325576882|ref|ZP_08147497.1| glucose inhibited division protein A [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161088|gb|EGC73206.1| glucose inhibited division protein A [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTENYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E++ +  +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEVTDILVEQDCVCGVETKMGLKFRAKSVVLTAGTFLAGKIHIGLEHYEGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +     +    RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLNLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAYELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +     + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREANGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|229176159|ref|ZP_04303651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus MM3]
 gi|228607318|gb|EEK64648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus MM3]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGREIGLIKEERYERFTNKKLKIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|146313753|ref|YP_001178827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacter sp. 638]
 gi|166989737|sp|A4WGE6|MNMG_ENT38 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145320629|gb|ABP62776.1| glucose inhibited division protein A [Enterobacter sp. 638]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/624 (46%), Positives = 397/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
            SL     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 ISLSRRLRELPLRVNRLKTGTPPRIDARTIDFSVLAQQHGDTPIPVFSFMGNAAQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL++ 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLSTM 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIETERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           KS  +     S   ++        +  +  + L  P  + + L  + P A         E
Sbjct: 481 KSTWVNPLADSVAEVNAHLAAPLSREASGEDLLRRPGMTYEQLVQMTPFAPGLDDAEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQIKYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|315635268|ref|ZP_07890545.1| glucose inhibited division protein A [Aggregatibacter segnis ATCC
           33393]
 gi|315476014|gb|EFU66769.1| glucose inhibited division protein A [Aggregatibacter segnis ATCC
           33393]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVRE
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E++  + +V +        +V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEVSDILVEQDRATGVVTKMGLKFHAKSVILTAGTFLAGKIHIGLENYEGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +          RLKTGTP R+D +TI +    +Q  D  L  FSFM     + RQI C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTIDFSVLAEQHGDAELPIFSFMGSVDQHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 FITHTNEKTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TTNEIYPNGISTSLPFDVQMGIVNSMKGLENARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G 
Sbjct: 363 QGLFFAGQINGTTGYEEAASQGLLAGINAGLYVQEKEVWFPRRDQAYMGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ + Q L ++ P          IE++
Sbjct: 483 IWLHPRSEYLEEANQVLGSPLVREASGEDLLRRPEINYQILTALTPFQPPMADKEAIEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EISIKYQGYIEHQQDEIEKQKRHENTAIPPNFDYSKVAGLSNEVRIKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|196036098|ref|ZP_03103498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus W]
 gi|218906675|ref|YP_002454509.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH820]
 gi|195991265|gb|EDX55233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus W]
 gi|218539382|gb|ACK91780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH820]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    ++ L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKARLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|228911323|ref|ZP_04075127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 200]
 gi|228848341|gb|EEM93191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 200]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGICKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|228955733|ref|ZP_04117728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229072948|ref|ZP_04206144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus F65185]
 gi|229082697|ref|ZP_04215144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock4-2]
 gi|229181729|ref|ZP_04309052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 172560W]
 gi|229193734|ref|ZP_04320675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 10876]
 gi|228589759|gb|EEK47637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus ATCC 10876]
 gi|228601762|gb|EEK59260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus 172560W]
 gi|228700609|gb|EEL53148.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock4-2]
 gi|228710194|gb|EEL62172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus F65185]
 gi|228803961|gb|EEM50585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGRKIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|238897248|ref|YP_002921996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238549578|dbj|BAH65929.1| glucose-inhibited division protein A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 629

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDSRTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +  +  S+  ++        +  +  + L  P+ + + L  + P           E
Sbjct: 481 KSTWVNPQAESANEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|26986749|ref|NP_742174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida KT2440]
 gi|38257497|sp|Q88RW8|MNMG_PSEPK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24981339|gb|AAN65638.1|AE016190_4 glucose-inhibited division protein A [Pseudomonas putida KT2440]
          Length = 631

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 68  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQSCD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 128 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 188 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I  K         +    L+ P+     L             V E+++I + 
Sbjct: 488 PNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK   
Sbjct: 607 TPAAISLLLIHLKKRGA 623


>gi|319897901|ref|YP_004136098.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3031]
 gi|317433407|emb|CBY81788.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           F3031]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|313496413|gb|ADR57779.1| MnmG [Pseudomonas putida BIRD-1]
          Length = 630

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQSCD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 187 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I  K         +    L+ P+     L             V E+++I + 
Sbjct: 487 PNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK   
Sbjct: 606 TPAAISLLLIHLKKRGA 622


>gi|261341602|ref|ZP_05969460.1| hypothetical protein ENTCAN_08064 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315953|gb|EFC54891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterobacter cancerogenus ATCC 35316]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/624 (46%), Positives = 400/624 (64%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R+ +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPGRSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           K+  +  +  ++  ++        +  +  + L  P+ + ++L ++   A         E
Sbjct: 481 KTTWVNPQAETAAEVNTHLTAPLSREASGEDLLRRPEMTYESLVNLTAFAPGLDDAEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|206970241|ref|ZP_03231194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH1134]
 gi|206734818|gb|EDZ51987.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus AH1134]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLSLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S   + +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKEEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGRKIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|62182357|ref|YP_218774.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75479634|sp|Q57HW9|MNMG_SALCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62129990|gb|AAX67693.1| associate with glucose-inhibited division [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716851|gb|EFZ08422.1| glucose-inhibited division protein A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 481 KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TP A+++LL+++KK  +
Sbjct: 601 ASRISGVTPVAISILLVWLKKQGM 624


>gi|75761489|ref|ZP_00741453.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218900624|ref|YP_002449035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus G9842]
 gi|228905427|ref|ZP_04069382.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 4222]
 gi|228968635|ref|ZP_04129618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|74491028|gb|EAO54280.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218545582|gb|ACK97976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus G9842]
 gi|228791064|gb|EEM38682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854247|gb|EEM98950.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis IBL 4222]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGMCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|146297755|ref|YP_001181526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166222920|sp|A4XN50|MNMG_CALS8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145411331|gb|ABP68335.1| glucose inhibited division protein A [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 626

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/616 (44%), Positives = 384/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++V+G GHAGCEAA   A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDIVVVGAGHAGCEAALACARLGLKTIVFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  Y+L M+R + SQ NLD+ QGEV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRARYKLYMKRVLESQPNLDIRQGEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ + +   ++ R   VVL TGTFL G I IG+     G  G  P+  L  
Sbjct: 127 CDILVEDGKVTGVKLTTGAIFRAKAVVLATGTFLGGRIIIGETVYDGGPDGMHPAKYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K   +  R KTGTPAR+  +++ + K + Q  DE + PFSF  + +   Q+ C +T 
Sbjct: 187 SLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQLGDEVITPFSFEHETLEIEQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +++G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP G +T+ 
Sbjct: 247 TTEETHRIIRENLHRAPLFTGLIQGVGPRYCPSIEDKVVRFADKPRHQVFIEPMGRDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++ GLE V I+RP YAIEYD INP +L  TL+ KKI GLF
Sbjct: 307 MYVQGMSSSLPEDVQIKMYRSVIGLENVQIMRPAYAIEYDCINPLQLEATLQFKKIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R ++F K  +        LK  V+ 
Sbjct: 427 RIMTSRAEYRLILRQDNADLRLTEIGYRIGLISQERYEKFLKKKKMIEDEIERLKKTVIA 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  +  +         T     E L  P+ S + L  I P        V E ++IE  
Sbjct: 487 PSDKVNKFLIEHGSSPISTGVKLSELLKRPELSYEALREIDPQRPDLPRSVKEEVEIEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E + IP+  DY+ +  LS E K+KLS ++P ++ QAS+I G+
Sbjct: 547 YEGYIKKQLQQIEQFKKLENKKIPEWVDYNQISGLSTEAKQKLSQIRPASIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI++++  
Sbjct: 607 SPADISVLLIWLEQAK 622


>gi|296105465|ref|YP_003615611.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059924|gb|ADF64662.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 629

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/624 (46%), Positives = 401/624 (64%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLERIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +  ++  ++        +  +  + L  P+ + +NL  +   A     +   E
Sbjct: 481 KTTWVNPQAETAAEVNAHLTAPLSREASGEDLLRRPEVTYENLVKLTAFAPGLEDAEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|229845662|ref|ZP_04465786.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 6P18H1]
 gi|229811400|gb|EEP47105.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 6P18H1]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/622 (48%), Positives = 396/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L            RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSYRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVFDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + +++    R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMEKIEQERQRLRS 482

Query: 481 LVLTSKN--LSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++  L  T+ +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEETNKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|311281694|ref|YP_003943925.1| glucose inhibited division protein A [Enterobacter cloacae SCF1]
 gi|308750889|gb|ADO50641.1| glucose inhibited division protein A [Enterobacter cloacae SCF1]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/624 (47%), Positives = 399/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
            SL     +      RLKTGTP R+D +TI +    +Q  D  L  FSFM +   + RQ+
Sbjct: 181 ISLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDTPLPVFSFMGNAAQHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +    SR  +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPSRAQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTAMGRELGLVDDARWARFNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           KS  +T    ++  ++        +  +  + L  P+ + + L  + P A         E
Sbjct: 481 KSAWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLVQLSPFAPGLEDVQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|145640560|ref|ZP_01796144.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
 gi|145275146|gb|EDK15008.1| glucose-inhibited division protein A [Haemophilus influenzae
           22.4-21]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D  +KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILDKQHGDAVLPVFSFMGSVEDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLNRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYQPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|229099910|ref|ZP_04230833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-29]
 gi|229118973|ref|ZP_04248318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-3]
 gi|228664498|gb|EEL19994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-3]
 gi|228683525|gb|EEL37480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-29]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETK I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKNIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|218234811|ref|YP_002370258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus B4264]
 gi|228961747|ref|ZP_04123350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229051152|ref|ZP_04194696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH676]
 gi|229112896|ref|ZP_04242427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-15]
 gi|229148033|ref|ZP_04276372.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST24]
 gi|296505911|ref|YP_003667611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis BMB171]
 gi|218162768|gb|ACK62760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus B4264]
 gi|228635458|gb|EEK91949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST24]
 gi|228670575|gb|EEL25888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock1-15]
 gi|228722215|gb|EEL73616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH676]
 gi|228797941|gb|EEM44951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296326963|gb|ADH09891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis BMB171]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|145637945|ref|ZP_01793586.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittHH]
 gi|145268859|gb|EDK08821.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittHH]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEAIDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILTKQHGDEVLPVFSFMGSVEDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF K ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNKKMENIEQERQRLRN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|206578873|ref|YP_002241278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae 342]
 gi|288937917|ref|YP_003441976.1| glucose inhibited division protein A [Klebsiella variicola At-22]
 gi|206567931|gb|ACI09707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella pneumoniae 342]
 gi|288892626|gb|ADC60944.1| glucose inhibited division protein A [Klebsiella variicola At-22]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSADQHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +  +  S+  ++        +  +  + L  P+ + + L  + P A         E
Sbjct: 481 KSTWVNPQAESAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLIQLSPFAPGLEDQQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  ++P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTVLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|290511657|ref|ZP_06551025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. 1_1_55]
 gi|289775447|gb|EFD83447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Klebsiella sp. 1_1_55]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 395/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMATAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM     + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGSVDQHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +  +  S+  ++        +  +  + L  P+ + + L  + P A         E
Sbjct: 481 KSTWVNPQAESAAEVNAHLTAPLSREASGEDLLRRPEMTYEQLIQLSPFAPGLEDQQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  ++P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTVLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|291615571|ref|YP_003518313.1| GidA [Pantoea ananatis LMG 20103]
 gi|291150601|gb|ADD75185.1| GidA [Pantoea ananatis LMG 20103]
          Length = 696

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 390/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 68  MFYQDPFDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 127

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 128 KEVDALGGLMAGAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 187

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS
Sbjct: 188 FQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 247

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L            RLKTGTP R+D ++I +     Q  D  +  FSFM +   + Q +
Sbjct: 248 IPLAKRLRALPLRVDRLKTGTPPRIDARSIDFSVLAPQHGDNPMPVFSFMGNAGQHPQQV 307

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 308 PCWMTYTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPE 367

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L  TLE+K
Sbjct: 368 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKLTLESK 427

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + 
Sbjct: 428 FIDGLFFAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTL 487

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L
Sbjct: 488 GTKEPYRMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRL 547

Query: 479 KSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           + + +  K+    +  +I+     K  +A + L  P+ +   L ++             E
Sbjct: 548 RDIWVHPKSEHVEAVNTITSSPLTKEASAEDLLRRPEMTYLKLMALDAFGPALADEQAAE 607

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E       E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 608 QVEIQVKYEGYIARQQEEIDRQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQ 667

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LLIY+KK  +
Sbjct: 668 ASRISGVTPAAISILLIYLKKQGL 691


>gi|145633461|ref|ZP_01789190.1| glucose-inhibited division protein A [Haemophilus influenzae 3655]
 gi|144985830|gb|EDJ92438.1| glucose-inhibited division protein A [Haemophilus influenzae 3655]
          Length = 629

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L            RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSYRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIELERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAIEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|319651094|ref|ZP_08005228.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
 gi|317397264|gb|EFV77968.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
          Length = 629

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/619 (44%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EA   +A+LGA T +IT     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGVEAGLASARLGAKTLMITINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL +IQG V
Sbjct: 67  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFTYQHEMKKTLENEPNLTLIQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V Q  ++     VV+TTGTFLRG I +G+LK  +G     PS  L  
Sbjct: 127 ERLIVEDGECRGVVTQTGAVYHSKAVVITTGTFLRGEIILGELKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH +I  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNEETHTLIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + +RTIPGLE V ++R GYAIEYD I P +L+PTLETKK+  L+
Sbjct: 307 VYVQGLSTSLPEDVQQKILRTIPGLENVQMMRAGYAIEYDSIVPTQLWPTLETKKVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+  KS   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGMNAGLKSLDKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    Q     ++ L+ +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGRKVGLISEERYEKFLMKKQAIEEEKARLQGIIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             +     + S   S  +DG    A + L  P+ + +++  + P        V E+++I+
Sbjct: 487 PTSDVQELIKSQGGSELKDGIR--ASDLLKRPEMTYEHIQQVVPAESTLDPDVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP++ DY  +  L++E ++KL  ++P +L QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERLKKMENKKIPENIDYDDINGLASEARQKLKEVRPLSLAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|301019838|ref|ZP_07183978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
 gi|299882052|gb|EFI90263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
          Length = 617

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/611 (47%), Positives = 392/611 (64%), Gaps = 5/611 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 487 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLI 611
           +TPAA+++LL+
Sbjct: 607 VTPAAISILLV 617


>gi|68249206|ref|YP_248318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 86-028NP]
 gi|81170546|sp|Q4QMT9|MNMG_HAEI8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68057405|gb|AAX87658.1| glucose inhibited division protein A [Haemophilus influenzae
           86-028NP]
          Length = 629

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L            RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSYRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + +++    R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMEKIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAIEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|295095367|emb|CBK84457.1| glucose-inhibited division protein A [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 629

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/624 (46%), Positives = 401/624 (64%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S + +    +R+ +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEKEGWAPARSQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEVGRELGLVDDERWARFNEKLERIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +  ++  ++        +  +  + L  P+ + +NL  +   A     +   E
Sbjct: 481 KTTWVNPQAETAAEVNAHLTAPLSREASGEDLLRRPEVTYENLVKLTAFAPGLEDAEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++ +  E  L+P+  DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQDEIEKQQRNENTLLPEMLDYRQVTGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|228942632|ref|ZP_04105164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975562|ref|ZP_04136114.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982198|ref|ZP_04142487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis Bt407]
 gi|228777550|gb|EEM25828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis Bt407]
 gi|228784172|gb|EEM32199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817058|gb|EEM63151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326943281|gb|AEA19177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 629

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ I   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGICKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRSFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|229153642|ref|ZP_04281818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1550]
 gi|228629828|gb|EEK86481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus m1550]
          Length = 629

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|121189|sp|P25756|MNMG_PSEPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|581463|emb|CAA44419.1| unnamed protein product [Pseudomonas putida]
          Length = 630

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQNCD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 187 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I  K         +    L+ P+     L             V E+++I + 
Sbjct: 487 PNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK   
Sbjct: 606 TPAAISLLLIHLKKRGA 622


>gi|301155227|emb|CBW14692.1| glucose-inhibited cell-division protein [Haemophilus parainfluenzae
           T3T1]
          Length = 629

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTENYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E++ +  +  +     R  +V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEVTDILIEQDRVCGVETKMGLKFRAKSVILTAGTFLAGKIHIGLEHYEGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +     +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLNLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +     + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREANGEDLLRRPEITYDILTSLTPYKPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|301169298|emb|CBW28896.1| glucose-inhibited cell-division protein [Haemophilus influenzae
           10810]
          Length = 629

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L            RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LSYRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIEQERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|283787570|ref|YP_003367435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Citrobacter
           rodentium ICC168]
 gi|282951024|emb|CBG90702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Citrobacter
           rodentium ICC168]
          Length = 629

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/618 (46%), Positives = 396/618 (64%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAAQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIES 540
               ++  ++        +  +  + L  P+ +   L ++ P       +   E+++I+ 
Sbjct: 487 PTAETAVEVNAHLTAPLSREASGEDLLRRPEMTYAQLTALSPFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|145635868|ref|ZP_01791558.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittAA]
 gi|148825138|ref|YP_001289891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittEE]
 gi|166222937|sp|A5U9Q7|MNMG_HAEIE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145266880|gb|EDK06894.1| glucose-inhibited division protein A [Haemophilus influenzae
           PittAA]
 gi|148715298|gb|ABQ97508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae PittEE]
          Length = 629

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPMFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITYTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS + +LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSSLSNEVRAKLEQHRPVSISQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|229026924|ref|ZP_04183247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1272]
 gi|228734382|gb|EEL85053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1272]
          Length = 629

 Score =  814 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 392/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + +   +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVDRMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|294638360|ref|ZP_06716613.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda ATCC 23685]
 gi|291088613|gb|EFE21174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Edwardsiella tarda ATCC 23685]
          Length = 629

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/618 (46%), Positives = 389/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMASARMGRQTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAQAIDKGGIQFRILNGSKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   + Q     R   VVLT GTFL G IHIG      GR GD PS  L + 
Sbjct: 127 DLIVENDRVVGAITQMGLKFRAKAVVLTVGTFLNGKIHIGLENYSGGRAGDPPSIGLAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP RLD +TI      +Q  D     FSF+ D   + RQ+ C IT 
Sbjct: 187 LRELPLRVNRLKTGTPPRLDARTIDLAALAQQHGDNPAPVFSFLGDASQHPRQLPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNERTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMAIVRSMDGMQNARIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R + +L+     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRCAAELEGWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG +LG + + R   F + ++     R  L+   + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTPIGRELGLVDDERWAHFNRKLENMERERQRLRDTWVH 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +   + +I+        +     + L  P+     L S+ P A         E+++I+ 
Sbjct: 487 PQAEQAATINALLKTPLSREANGEDLLRRPEMDYAALTSLAPFAPPLEDRQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYQGYIARQQDEIEKQMRNEHTLLPADLDYRQVNGLSNEVIAKLNDHKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGM 624


>gi|212637844|ref|YP_002314369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella piezotolerans WP3]
 gi|226704797|sp|B8CVV6|MNMG_SHEPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|212559328|gb|ACJ31782.1| Glucose-inhibited division protein A subfamily [Shewanella
           piezotolerans WP3]
          Length = 629

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/622 (46%), Positives = 383/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLVVENETVVGVVTQMGLAFEAPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +     GRLKTGTP R+D  TI + K  +Q  D+ L   SF+ D   +  Q+ C
Sbjct: 183 LAHRLQELPIRVGRLKTGTPPRIDANTIDFSKMTEQKGDDPLPVMSFIGDVNQHPEQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL
Sbjct: 243 HITHTNERTHDIIRAGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQIQGKETWCPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F+  ++        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDERWAKFSDKMESIETELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERL 536
             +  ++     ++        +  T  + L  P+     L SI             E++
Sbjct: 483 QWIHPRSPLVDVLNPHLKTPIAREATFEDLLRRPELDYPTLMSIDGFGPGIDDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIRHETTGLPLDLDYQEVPGLSNEVIAKMNEHKPETVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++KK  +
Sbjct: 603 RISGMTPAAISILLVHLKKRGL 624


>gi|190569302|ref|ZP_03022196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis Tsiankovskii-I]
 gi|190559609|gb|EDV13600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus anthracis Tsiankovskii-I]
          Length = 629

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGP VR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPTVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|127514781|ref|YP_001095978.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella loihica PV-4]
 gi|166200613|sp|A3QJS1|MNMG_SHELP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126640076|gb|ABO25719.1| glucose inhibited division protein A [Shewanella loihica PV-4]
          Length = 629

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/622 (46%), Positives = 387/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q
Sbjct: 63  IDALGGAMAVATDHAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLRLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V       + +  +V Q         +VLT GTFL G IHIG      GR GD PS S
Sbjct: 123 QAVDDLIVGNDRVIGVVTQMGLAFEAPAIVLTAGTFLSGKIHIGLENYSGGRAGDPPSIS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   +     GRLKTGTP R+D  TI +D   +Q  D+ L   SF+ D K   +QI C
Sbjct: 183 LADRLRELPIRVGRLKTGTPPRIDANTINFDLMTEQKGDDPLPVMSFIGDVKDHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 FITHTNERTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIQGMENAEIIRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 SGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F    +        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDDRWAKFNAKREAIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  T  E L  P+     L S+             E++
Sbjct: 483 QWIHPNSPLVDALNPHLNTPITREATFEELLRRPELDYPKLMSVEGFGPAIEDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    EK  +P+D DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIRHEKTGLPQDLDYQEVPGLSNEVIAKLNDHKPDTVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|300719171|ref|YP_003743974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           glucose-inhibited division protein A [Erwinia billingiae
           Eb661]
 gi|299065007|emb|CAX62127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           Glucose-inhibited division protein A [Erwinia billingiae
           Eb661]
          Length = 629

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 388/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAHAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R  +VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKSVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +      RLKTGTP R+D +TI +   + Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDPQHGDTPMPVFSFMGNVSQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNENTHEVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQIQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKHIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKETWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEKERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            K+        +      K  +  + L  P+ + Q L ++   A         E+++I+ 
Sbjct: 487 PKSDSVEEVNGVLSAALTKEASGEDLLRRPEMTYQQLMTLSTFAPALADPQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    +  E  L+P + DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEINRQQRNENTLLPAELDYHQVSGLSNEVIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|229035141|ref|ZP_04189087.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1271]
 gi|228728207|gb|EEL79237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1271]
          Length = 629

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G++T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSNTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGECKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ ++++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|327395840|dbj|BAK13262.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pantoea ananatis AJ13355]
          Length = 629

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 390/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAGAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L            RLKTGTP R+D ++I +     Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLAKRLRALPLRVDRLKTGTPPRIDARSIDFSVLAPQHGDNPMPVFSFMGNAGQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCWMTYTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L  TLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N+AR+S   +     R  +Y+GV++DDL + 
Sbjct: 361 FIDGLFFAGQINGTTGYEEAAAQGLLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRL 480

Query: 479 KSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           + + +  K+    +  +I+     K  +A + L  P+ +   L ++             E
Sbjct: 481 RDIWVHPKSEHVEAVNTITSSPLTKEASAEDLLRRPEMTYLKLMALDAFGPALADEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E       E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQEEIDRQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LLIY+KK  +
Sbjct: 601 ASRISGVTPAAISILLIYLKKQGL 624


>gi|260774973|ref|ZP_05883873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609063|gb|EEX35222.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 631

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 391/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHEKFDVIVVGGGHAGTEAALASARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVREALENAPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++    +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSVDDLIVEQDRAVGVVTQMGLRFHAKAVVLTVGTFLGGKIHIGMESSSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARSVDFSQLEAQHGDNPTPVFSFMGQRTQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNDQTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LNTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   D     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKDGWSPRRDQAYVGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I      R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEQARELGLIDDLRWARFNEKIDNMTKERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +  K+  + + +   K    +  +  + L  P+ + Q L  +   A         E+
Sbjct: 482 DTWMNPKSQGIDALNQLLKTPMVREASGEDLLRRPEMTYQQLTELEAFAPALADQQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY+++  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYEGYIKRQQDEIEKSLRHEHTHLPLDMDYANVKGLSNEVVAKLNESKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+++KK  +
Sbjct: 602 SRISGITPAAISILLVHLKKQGM 624


>gi|110835598|ref|YP_694457.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax borkumensis SK2]
 gi|122959208|sp|Q0VKW3|MNMG_ALCBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110648709|emb|CAL18185.1| glucose-inhibited division protein A [Alcanivorax borkumensis SK2]
          Length = 631

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/625 (47%), Positives = 393/625 (62%), Gaps = 4/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ + VIVIGGGHAG EAA  +A++G ST L+TH   T+G MSCNPAIGG+GK HLVRE
Sbjct: 3   FSQRFGVIVIGGGHAGTEAALASARMGVSTLLLTHNIETLGQMSCNPAIGGIGKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D  GIQFRVLN +KGPAVR  R QADRELY+ A++  + +Q NL + Q
Sbjct: 63  IDALGGAMGRATDKGGIQFRVLNARKGPAVRATRAQADRELYKAAIRGTLENQPNLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V           VVLT GTFL GVIHIG      GR GD PSN+
Sbjct: 123 QAVDDLVVENGRCVGVVTNMGLRFMADAVVLTAGTFLGGVIHIGLDNHQGGRAGDQPSNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L     +  F   RLKTGTP R+DGK++ +   E+Q+ D  L   S++     + Q + C
Sbjct: 183 LACRLRELPFRVDRLKTGTPPRIDGKSVDFSVMEEQWGDNPLPVMSYLGKVEEHPQQVCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II      S +++G I   GPRYCPSIEDK+ R+ +++ HQIF+EPEGL
Sbjct: 243 YITHTNAQTHDIIRSGFDRSPMFTGVIDGVGPRYCPSIEDKVNRYPDKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYDY NP++L  +LET+ +
Sbjct: 303 NTHELYPNGISTSLPFDVQLQAVRSIRGFENAHITRPGYAIEYDYFNPQDLKHSLETQHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+AR S   D     R ++YIGV++DDL + G 
Sbjct: 363 PGLFFAGQINGTTGYEEAGAQGLLAGLNAARLSQGKDAWTPRRDEAYIGVLVDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F             LK+
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVGDERWAAFNAKRDGMASEEQRLKT 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +  K   + +++    K         + L  P+ +  NL      A +  S VIE+++
Sbjct: 483 TWVRPKTPEAEAVNALIEKPLTHEYNLLDLLKRPELTYANLAEAVALADRPDSAVIEQME 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + YA Y  RQ  E ++++  E   +P +FDY  +  LSNE+K+KLS ++P  L QA +
Sbjct: 543 ILAKYAGYIDRQADEIEKLRAAETTALPVEFDYGQVKGLSNEVKQKLSEIRPQTLGQAGR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G+TPAA++LL+IY+KK+  +   
Sbjct: 603 IPGVTPAAISLLMIYLKKHHHQKKA 627


>gi|229130729|ref|ZP_04259682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-Cer4]
 gi|228652746|gb|EEL08631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-Cer4]
          Length = 629

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMAYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|30023507|ref|NP_835138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus cereus ATCC 14579]
 gi|38372296|sp|Q814F7|MNMG_BACCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29899068|gb|AAP12339.1| Glucose inhibited division protein A [Bacillus cereus ATCC 14579]
          Length = 629

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHELKKTIEETPNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ +   +V Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEEGVCKGVVTQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVVLGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLSSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRNIGGSELKDGIR--ASDLLRRPEMAYEHIHLLVPSEVELSDEVKEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|329298811|ref|ZP_08256147.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Plautia stali symbiont]
          Length = 628

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/617 (48%), Positives = 388/617 (62%), Gaps = 4/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I   V Q     R  TVVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRIVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
                    RLKTGTP R+D +TI +     Q  D+ +  FSFM     + Q + C IT 
Sbjct: 187 LRALPLRVNRLKTGTPPRIDARTIDFSVLTPQHGDDPMPVFSFMGYAGQHPQQVPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNELTHEVIHNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGLENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL AG+N+AR+S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLQAGLNAARQSADKEGWAARRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+ + ++     R  L+ L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARYNQKLEAIEQERQRLRDLWVH 486

Query: 485 SK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESS 541
            K  N+S  +       K  +A + L  P+ + + L  +             E+++I+  
Sbjct: 487 PKSENVSEVNTVISALTKEASAEDLLRRPEMTYELLMLLPSYGPALADEQAAEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E    +  E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I G+
Sbjct: 547 YEGYIARQQEEIDRQQRNENTLLPADLDYRQVNGLSNEVIAKLNDHKPTSIGQASRISGI 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA+++LLIY+KK  +
Sbjct: 607 TPAAISILLIYLKKQGL 623


>gi|229014649|ref|ZP_04171763.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides DSM 2048]
 gi|228746660|gb|EEL96549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides DSM 2048]
          Length = 629

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L+S+ + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEVTYEHIHLLVPSEVPLSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LLIYI++  +
Sbjct: 605 GVNPADVSILLIYIEQGKI 623


>gi|163943163|ref|YP_001648047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus weihenstephanensis KBAB4]
 gi|229136308|ref|ZP_04265055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST196]
 gi|229170186|ref|ZP_04297872.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH621]
 gi|205831488|sp|A9VTL9|MNMG_BACWK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163865360|gb|ABY46419.1| glucose inhibited division protein A [Bacillus weihenstephanensis
           KBAB4]
 gi|228613287|gb|EEK70426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH621]
 gi|228647180|gb|EEL03268.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus BDRD-ST196]
          Length = 629

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L+S+ + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LLIYI++  +
Sbjct: 605 GVNPADVSILLIYIEQGKI 623


>gi|161505600|ref|YP_001572712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189039354|sp|A9MJQ9|MNMG_SALAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160866947|gb|ABX23570.1| hypothetical protein SARI_03776 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 629

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/618 (47%), Positives = 391/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAAAIDRAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMLFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFSDRNQHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R  RF + ++     R  LKS  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEIGRDLGLVDDERWARFNEKLENIERERQRLKSTWVT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
                +  ++        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSAEFAADVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLSAFAPALEDEQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQLRNENTLLPATLDYRLVSGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 VTPAAISILLVWLKKQGM 624


>gi|312876170|ref|ZP_07736157.1| glucose inhibited division protein A [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796985|gb|EFR13327.1| glucose inhibited division protein A [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 632

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/614 (45%), Positives = 387/614 (63%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 11  EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ QGEV
Sbjct: 71  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQGEV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  
Sbjct: 131 CEIIVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGRVIIGETVYDSGPDGMHPARYLTE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T
Sbjct: 191 NLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIDQVPCYLT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD
Sbjct: 251 YTTEETHRIIRENLHRAPLFTGLISGIGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTD 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 311 EMYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 371 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G I ++R ++F +  +      + +K+ V+
Sbjct: 431 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLISQQRYEKFLQKKKMIEDEINRVKNTVI 490

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I P        V + ++IE 
Sbjct: 491 APSEKVNKFLQEKGSSPITTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEIEI 550

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP+  DYS +  LS E K+KLS ++P ++ QAS+I G
Sbjct: 551 KYEGYIKKQLAQIEQFKKLENKKIPEWVDYSQILGLSTEAKQKLSQIRPASIGQASRISG 610

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 611 VSPADISVLLIWLE 624


>gi|90023652|ref|YP_529479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Saccharophagus degradans 2-40]
 gi|123395363|sp|Q21DG2|MNMG_SACD2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89953252|gb|ABD83267.1| glucose inhibited division protein A [Saccharophagus degradans
           2-40]
          Length = 630

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/626 (46%), Positives = 394/626 (62%), Gaps = 5/626 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EA   AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDA
Sbjct: 6   QYDVIVIGGGHAGTEACLAAARMGCKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NLD+ Q   
Sbjct: 66  LGGAMALATDKGGIQFRILNSRKGPAVRATRAQADRALYKAAVREILENQPNLDIFQQAA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +  Q     +  TVVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 126 DDLVVEGERVTGVTTQMGVTFKAPTVVLTAGTFLGGKIHIGMENHSGGRAGDPPSIALAS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +      RLKTGTP R+D +++ +D  EKQ+ +E+    S+M        Q  C IT
Sbjct: 186 RLRELPLRVDRLKTGTPPRIDARSVNFDGLEKQWGEEKTPVMSYMGSLADHPEQTCCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH  I      S +++G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T 
Sbjct: 246 HTNAQTHDFIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKDSHQIFIEPEGLKTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q  F+R+I G E  +I RPGYAIEYD+ +P++L  + ETK I GL
Sbjct: 306 ELYPNGISTSLPFDVQMAFVRSIKGFENAHITRPGYAIEYDFFDPRDLKYSFETKHIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEA AQGL+AG+N+A K+   +  C  R ++YIGV+ DDL S G  EP
Sbjct: 366 FFAGQINGTTGYEEAGAQGLLAGLNAALKAQGKEAWCPRRDEAYIGVLADDLISMGTREP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F K  +        +++  +
Sbjct: 426 YRMFTSRAEYRLLLREDNADMRLTEKGRELGLVDDARWQAFCKKREAIELETQRMRTTWI 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              +  + +++ K   +  +  +  + L  P+ +  +L S+  +A      V E+++I +
Sbjct: 486 QPNSAEANALAAKMPAELAREYSLLDLLKRPELTYDDLGSLKGEAVS-DPQVAEQVEINT 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  + + ++  E  +IP +FDY S+  LSNELK+KLS  +P  L +AS+I G
Sbjct: 545 KYAGYINRQTDDIERMRQHENTVIPVEFDYMSVEGLSNELKQKLSEARPETLSRASRIPG 604

Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
           +TPAA++L+LIY+KK  +  N+  L 
Sbjct: 605 VTPAAVSLILIYLKKRGLLKNKAALA 630


>gi|229106077|ref|ZP_04236690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-28]
 gi|228677343|gb|EEL31607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-28]
          Length = 629

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETTNLTLFQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETK I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKNIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEERYERFTNKKLQIEQEKERLGSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PRPEVQELIRSIGGSELKDGIR--ASDLLRRPEMTYEHIHLLVPSEVELSDEVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 TKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|156936121|ref|YP_001440037.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cronobacter sakazakii ATCC BAA-894]
 gi|205831508|sp|A7MMW3|MNMG_ENTS8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156534375|gb|ABU79201.1| hypothetical protein ESA_04015 [Cronobacter sakazakii ATCC BAA-894]
          Length = 629

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 394/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYKQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +   ++Q  D  +  FSFM     + RQ+ C +T 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDQQHGDNPMPVFSFMGSADQHPRQVPCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S + +     R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRYSAEKEGWAPGRSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RF + ++     R  L+S  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEVGREMGLVDDARWARFNEKLENIERERQRLRSTWVT 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               S   I+        +  +  + L  P+ +   L S+   A         E+++I+ 
Sbjct: 487 PSTASVEEINTMLTAPLSREASGEDLLRRPEMTYAQLTSLSAFAPALDDAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNENTLLPATLDYRQVNGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGL 624


>gi|260595793|ref|YP_003208364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cronobacter turicensis z3032]
 gi|260214970|emb|CBA26596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cronobacter turicensis z3032]
          Length = 629

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/618 (46%), Positives = 393/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYKQAVRTALENQPNLMIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSVPLARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +      RLKTGTP R+D +TI +   ++Q  D  +  FSFM     + RQ+ C +T 
Sbjct: 187 LRELPLRVSRLKTGTPPRIDARTIDFSVLDQQHGDNPMPVFSFMGSADQHPRQVPCYVTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMKGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S + +     R+ +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRYSAEKEGWAPGRSQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF + ++     R  L+S  +T
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGREMGLVDDARWARFNEKLENIERERQRLRSTWVT 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
               S   I+        +  +  + L  P+ +   L ++   A         E+++I+ 
Sbjct: 487 PSTASVEEINTVLTAPLSREASGEDLLRRPEMTYAQLTALSVFAPALDDVQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E ++ +  E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQDEIEKQQRNESTLLPATLDYRQVNGLSNEVIAKLNDHKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LL+++KK  +
Sbjct: 607 ITPAAISILLVWLKKQGL 624


>gi|283836165|ref|ZP_06355906.1| hypothetical protein CIT292_10591 [Citrobacter youngae ATCC 29220]
 gi|291068359|gb|EFE06468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter youngae ATCC 29220]
          Length = 629

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/624 (47%), Positives = 396/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q +D  +  FSF+ D   + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLSQQNSDNPMPVFSFLGDVAQHPRQM 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AG+N+AR S + D     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGMLAGLNAARLSAEKDGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLERIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           KS  +     S+  ++        +  +  + L  PD +   L S+   A         E
Sbjct: 481 KSTWVNPLAESAAEVNAHLATPLSREASGEDLLRRPDMTYAQLTSLSAFAPALDDAQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E +  +  E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQEEIERQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGVTPAAISILLVWLKKQGM 624


>gi|107024504|ref|YP_622831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia AU 1054]
 gi|116688117|ref|YP_833740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia HI2424]
 gi|123371037|sp|Q1BR97|MNMG_BURCA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222913|sp|A0K2X0|MNMG_BURCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|105894693|gb|ABF77858.1| glucose inhibited division protein A [Burkholderia cenocepacia AU
           1054]
 gi|116646206|gb|ABK06847.1| glucose inhibited division protein A [Burkholderia cenocepacia
           HI2424]
          Length = 656

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL +   +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRADQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T   YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPVEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|167036428|ref|YP_001671659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida GB-1]
 gi|189039352|sp|B0KRB9|MNMG_PSEPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166862916|gb|ABZ01324.1| glucose inhibited division protein A [Pseudomonas putida GB-1]
          Length = 630

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 383/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQSCD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 187 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I  K         +    L+ P+     L             V E+++I + 
Sbjct: 487 PNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DYS++  LS E++ KL   +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPVDIDYSTISGLSKEIQGKLGQTRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK   
Sbjct: 606 TPAAISLLLIHLKKRGA 622


>gi|90413743|ref|ZP_01221731.1| glucose-inhibited division protein A [Photobacterium profundum
           3TCK]
 gi|90325212|gb|EAS41709.1| glucose-inhibited division protein A [Photobacterium profundum
           3TCK]
          Length = 629

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/622 (46%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQENFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  VDALGGLMAKATDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREALENQPNLMLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V +     R ++VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLIVENDRVIGVVTEMGLKFRATSVVLTVGTFLGGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +  F   RLKTGTP R+D +T+ + + + Q  D  +  FSFM     + RQI C
Sbjct: 183 LASRLRELPFRVDRLKTGTPPRIDARTVDFSRLQAQHGDNPIPTFSFMGKTSDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 YITYTNEKTHDVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T ETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQIQIVRSMDGFENAAIMRPGYAIEYDFFDPRDLKQTFETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A +S   +  C  R  +Y+GV+IDDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLLAGMNAALQSQGKEGWCPRRDQAYMGVLIDDLSTMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDDRWARFNQKVENIEQERQRLKD 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERL 536
           + +   +     I+        +     + L  P+ + + L  +   +     +   E++
Sbjct: 483 IWINPNSDHVDEINKILKTPIAREANGEDLLRRPEITYKLLTQLEDFSPAHIDTQASEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + +  Y  Y  RQ  E ++    E   +P D DYS +  LSNE+  KL+  KP  +  AS
Sbjct: 543 ETQVKYQGYIDRQKDEVEKSLRHETTKLPFDLDYSIVKGLSNEVIAKLTDAKPETIGMAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGM 624


>gi|312794738|ref|YP_004027661.1| glucose inhibited division protein a [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181878|gb|ADQ42048.1| glucose inhibited division protein A [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 639

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/614 (45%), Positives = 387/614 (63%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV VIG GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 18  EYDVAVIGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ QGEV
Sbjct: 78  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQGEV 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  
Sbjct: 138 CEIIVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGETVYDSGPDGMHPARYLTE 197

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T
Sbjct: 198 NLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIVQVPCYLT 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD
Sbjct: 258 YTTEETHRIIRENLHRAPLFTGLISGIGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTD 317

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 318 EMYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 377

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 378 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEP 437

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G I ++R ++F +  +      + +K+ V+
Sbjct: 438 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLISQQRYEKFLQKKKMIEDEINRVKNTVI 497

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I P        V + ++IE 
Sbjct: 498 APSEKVNKFLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEIEI 557

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP+  DYS +  LS E ++KLS ++P ++ QAS+I G
Sbjct: 558 KYEGYIKKQLAQIEQFKKLENKKIPEWVDYSQILGLSTEARQKLSQIRPASIGQASRISG 617

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 618 VSPADISVLLIWLE 631


>gi|229065142|ref|ZP_04200435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH603]
 gi|228716171|gb|EEL67890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH603]
          Length = 629

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/618 (45%), Positives = 392/618 (63%), Gaps = 7/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V 
Sbjct: 68  GGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLFQGLVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L   
Sbjct: 128 RLIIEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSEH 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T T
Sbjct: 188 LEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  V
Sbjct: 248 STETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+ 
Sbjct: 308 YVQGLSTSLPEDVQRAMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLYT 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           + TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L+S+ +  
Sbjct: 428 LLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLESIFIKP 487

Query: 486 -----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++I++
Sbjct: 488 RPEVQELIRSIGGSELKDGIR--ASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVEIQT 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + + +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+I G
Sbjct: 546 KYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASRISG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LLIYI++  +
Sbjct: 606 VNPADVSILLIYIEQGKI 623


>gi|254250984|ref|ZP_04944302.1| Glucose-inhibited division protein A subfamily [Burkholderia dolosa
           AUO158]
 gi|124893593|gb|EAY67473.1| Glucose-inhibited division protein A subfamily [Burkholderia dolosa
           AUO158]
          Length = 656

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRVEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +               D     
Sbjct: 486 VTPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQVEIGIKYQGYIERQANEIERNDANENTRLPDGIDYRDVRGLSFEVSQKLNEFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++K+  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|254246686|ref|ZP_04940007.1| Glucose-inhibited division protein [Burkholderia cenocepacia PC184]
 gi|124871462|gb|EAY63178.1| Glucose-inhibited division protein [Burkholderia cenocepacia PC184]
          Length = 656

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL +   +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRADQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T   YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|229847407|ref|ZP_04467507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 7P49H1]
 gi|229809645|gb|EEP45371.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae 7P49H1]
          Length = 629

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHTTDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L            RLKTGTP R+D +TI +D   KQ +D  L  FSFM     + Q I C
Sbjct: 183 LSYRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHSDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLENARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEQERQRLRN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +  +  + L  P+ +   L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREASGEDLLRRPEMTYDILTSLTPYKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDYS + +LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTAIPANFDYSKVSSLSNEVRAKLEQHRPVSISQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|152980753|ref|YP_001355329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Janthinobacterium sp. Marseille]
 gi|166222939|sp|A6T482|MNMG_JANMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151280830|gb|ABR89240.1| glucose inhibited division protein A [Janthinobacterium sp.
           Marseille]
          Length = 645

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/631 (46%), Positives = 398/631 (63%), Gaps = 12/631 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G ST L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   IFPTKFDVIVVGGGHAGTEAALASARMGQSTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q         VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLLVEGDRVIGAVTQVGIKFYARAVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG++I +   ++Q  D   IP FS M    +  +Q+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPIPVFSVMGSVAMHPKQM 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPE
Sbjct: 242 PCWITHTNEKTHDLIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGKDSHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP +IQ   ++++ GLE  +I+RPGYAIEYDY +P+ L  TLETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDIQLALVQSMRGLEHAHILRPGYAIEYDYFDPRGLKSTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AGIN+A ++ + D     R ++Y+GVM+DDL +K
Sbjct: 362 VIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQERDAWTPRRDEAYLGVMVDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GVLEPYRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ +   F    +        L
Sbjct: 422 GVLEPYRMFTSRAEYRLSLREDNADMRLTEIGRQLGCVGDAQWAVFETKREAVARELERL 481

Query: 479 KSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKF------ 528
           +S  ++ +      +  +  K   +     + L  P+ S + L S+   D +        
Sbjct: 482 RSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVSYETLMSLKGVDGQDLAGPGVA 541

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I+  YA Y  RQ  E +   + E   +P++FDY  +  LS E+++KL   K
Sbjct: 542 EDAVREQVEIQLKYAGYIDRQAKEVERHDYYENLKLPQEFDYMEVKGLSFEVRQKLCKHK 601

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 602 PETLGQASRISGVTPAAISLLLVHLKKGGFK 632


>gi|170724367|ref|YP_001752055.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida W619]
 gi|205375707|sp|B1JFV2|MNMG_PSEPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169762370|gb|ACA75686.1| glucose inhibited division protein A [Pseudomonas putida W619]
          Length = 630

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/621 (45%), Positives = 383/621 (61%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   FPSRFEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q
Sbjct: 63  IDALGGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +
Sbjct: 123 QSCDDLIVEQDQVKGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIEC 240
           L +   +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM +  +  RQ+ C
Sbjct: 183 LAHRMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAAMHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL
Sbjct: 243 WITHTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G 
Sbjct: 363 GGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRESWCPRRDEAYIGVLVDDLITLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS
Sbjct: 423 QEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +        ++  K         +    L+ P+     L        +    V E+++
Sbjct: 483 TWVRPNTPQGQAVVDKFGTPLSHEYSLLNLLARPEVDYAGLIEATGG-EQIDPQVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P D DY+S+  LS E++ KL   +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTCLPVDIDYTSISGLSKEIQGKLGQTRPQTLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLLI++KK   
Sbjct: 602 IPGVTPAAISLLLIHLKKRGA 622


>gi|330952340|gb|EGH52600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae Cit 7]
 gi|330987013|gb|EGH85116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 630

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGC-IDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|260913576|ref|ZP_05920053.1| glucose-inhibited division protein A [Pasteurella dagmatis ATCC
           43325]
 gi|260632352|gb|EEX50526.1| glucose-inhibited division protein A [Pasteurella dagmatis ATCC
           43325]
          Length = 629

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVRE
Sbjct: 3   YTENYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q+NLD+ Q
Sbjct: 63  IDAMGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQDNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +S +  +     R   V+LT GTFL G IHIG      GR GD  S  
Sbjct: 123 QEVTDIILEGDRVSGVETKMGLKFRAKAVILTAGTFLSGKIHIGLENYTGGRAGDPASVM 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +     +    RLKTGTP R+D +TI +    KQ  DE+L  FSFM     +  QI C
Sbjct: 183 LADRLRDLNLRVDRLKTGTPPRIDARTIDFSILAKQHGDEKLPVFSFMGSVDQHPCQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQI+LEPEGL
Sbjct: 243 FITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFSERNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +YPNGIST+LP ++Q + + ++ G+EK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEIYPNGISTSLPFDVQMKIVNSMKGMEKARIVKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKDAWFPRRDQAYVGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + ++     R  L+ 
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADSRLTPIAQELGLITEERWARFNQKMENIELERQRLRQ 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +     + L  P+ + Q L ++ P          +E++
Sbjct: 483 IWLHPRSEYLEEANQVLSSPLVREANGEDLLRRPEINYQILTTLTPFQPAMKDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E +  K  E   IP +FDYS +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIERQKRHENTTIPANFDYSVVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGITPAAISILLVNLKKQGM 624


>gi|269103813|ref|ZP_06156510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163711|gb|EEZ42207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 629

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 392/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  + ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDNFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM R  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL +
Sbjct: 61  KEVDALGGLMARAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREALENQPNLML 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E++ +   V +     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVTDLIVEQDRVVGAVTEMGLKFRAKAVVLTVGTFLGGRIHIGLENYNGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
            +L +   +  F   RLKTGTP R+D +T+ +   EKQF D     FSFM  +  + RQI
Sbjct: 181 IALAHRLRELPFRVSRLKTGTPPRIDARTVDFSVLEKQFGDNPTPVFSFMGKQSDHPRQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPE
Sbjct: 241 PCFITHTNERTHDVIRNNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADKNSHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK
Sbjct: 301 GLTTHELYPNGISTSLPFDVQMQIVRSMKGFENADIVRPGYAIEYDFFDPRDLKQTFETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ++GLF AGQINGTTGYEEAAAQGL+AG+N+A  +   D     R  +Y+GV+IDDL++ 
Sbjct: 361 FMAGLFFAGQINGTTGYEEAAAQGLLAGMNAALCAQGKDGWSPRRDQAYMGVLIDDLSTI 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G + G + + R  RF + I+     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLLLREDNADLRLTEMGRQFGLVDDERWARFNQKIENMEQERQRL 480

Query: 479 KSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           K + +   +     ++        +  +  + L  P+ +   L +I             E
Sbjct: 481 KDIWINPNSAQVDELNKILKTPIVREASGEDLLRRPEVTYDMLTAIETFGPALEDTQASE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    EK  +P D DYS +  LSNE+  KL+  KP  +  
Sbjct: 541 QVEIQVKYQGYIDRQKDEVEKSLRHEKTKLPFDLDYSVVKGLSNEVIAKLNDAKPETVGM 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA++LLL+Y+KK  +
Sbjct: 601 ASRISGVTPAAISLLLVYLKKQGL 624


>gi|253573864|ref|ZP_04851206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846341|gb|EES74347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/616 (44%), Positives = 387/616 (62%), Gaps = 2/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +Y+VIV+G GHAGCEAA  AA++G  T ++T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   NYEVIVVGAGHAGCEAALAAARMGCRTLMVTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+ AM+  +  + NL ++QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFLYQHAMKETLEKEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L  
Sbjct: 127 EELIVEDGQCVGVITKTGAEYRAKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSVRLAQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  R KTGTP R+   +I + +TE Q  DE+   FS+ T    N Q+ C +T 
Sbjct: 187 NLKELGFELVRFKTGTPPRVHKDSIDFSQTEIQPGDEKPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHKIITDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFSDKPKHQIFLEPEGKNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++PEE+Q Q +R++PGL+ V ++R GYAIEYD + P +L+P+LETK++ GLF
Sbjct: 307 YYVQGFSTSMPEEVQLQMLRSVPGLQNVQMMRTGYAIEYDAVVPTQLWPSLETKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + I   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPIVLDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLTP+G ++G I E R  RF    Q+       LK+  + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTPLGYEIGLISEERYARFLDKKQKVEQEIERLKTTKIR 486

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              ++    SI              L  P+ +  ++ SI P   +    + E+++I+  Y
Sbjct: 487 PTEINPLLESIGSAPIQDGSNLLTILRRPEVTYAHIASISPSEVELDEEMQEQVEIQIKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  +Q+I  + ++  EK+ IP++ +Y  +  L+ E ++KLS ++P ++ QAS+I G+T
Sbjct: 547 AGYIEKQLIHVERLQKMEKKKIPENINYDDIQGLAIEARQKLSKIRPISIGQASRISGVT 606

Query: 603 PAALNLLLIYIKKNTV 618
           PA +++LL+Y++    
Sbjct: 607 PADISILLVYLEHYNR 622


>gi|332289277|ref|YP_004420129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gallibacterium anatis UMN179]
 gi|330432173|gb|AEC17232.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gallibacterium anatis UMN179]
          Length = 629

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/623 (47%), Positives = 390/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    YDVIV+GGGHAG EAA   A++G  T LITH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYPNQYDVIVVGGGHAGTEAALAPARMGLKTLLITHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  +  Q NLD+ 
Sbjct: 62  EIDALGGLMAHATDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALEKQPNLDLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E   +S +  +     +   VVLT GTFL G IHIG      GR GD  S 
Sbjct: 122 QQEVTDILIENGHVSGVSTKMGLTFKAKAVVLTAGTFLAGKIHIGLDHYEGGRAGDPASV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
            L       D    RLKTGTP RLD +TI +   ++Q  DE L  FS+M     + Q + 
Sbjct: 182 RLAERLRDLDLRVARLKTGTPPRLDARTIDFSVLKQQHGDEILPVFSYMGSVDEHPQQVP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II  N+  S +Y+G I+  GPRYCPSIEDK++RFG+RNGHQIFLEPEG
Sbjct: 242 CYITHTNLKTHDIIRANLDRSPMYTGIIEGVGPRYCPSIEDKVMRFGDRNGHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L ++ +YPNGIST+LP ++Q   + ++ GLE   I++PGYAIEYD+ +P++L P+LETK 
Sbjct: 302 LTSNEIYPNGISTSLPFDVQMGIVNSMQGLENARIVKPGYAIEYDFFDPRDLKPSLETKS 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQG++AG+N+       +     R  +YIGV++DDL + G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGILAGLNAGLHVQDKEAWYPRRDQAYIGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L+
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADLRLTAIGRELGLVDDARWARFNQKLENIELERQRLR 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
            + +  ++       ++      +     + L  P+   + L  + P          +E+
Sbjct: 482 QIWIHPRSEYLDEVNAVLNSPLMREANGEDLLRRPEMDYEKLCQLTPFQPAMQDKEAVEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDYS++  LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQNEEIERHKRHENTLIPAEFDYSAVVGLSNEVRSKLEQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+Y+KK  +
Sbjct: 602 SRISGITPAAISILLVYLKKQGM 624


>gi|115350140|ref|YP_771979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ambifaria AMMD]
 gi|122324420|sp|Q0BJM8|MNMG_BURCM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115280128|gb|ABI85645.1| glucose inhibited division protein A [Burkholderia ambifaria AMMD]
          Length = 656

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 388/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   + S+            D 
Sbjct: 482 KSTWVTPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGECAPTEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|148550506|ref|YP_001270608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas putida F1]
 gi|166222722|sp|A5WBB4|MNMG_PSEP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148514564|gb|ABQ81424.1| glucose inhibited division protein A [Pseudomonas putida F1]
          Length = 630

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 383/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQSCD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 187 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGLNT  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F             LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDLRWAAFCAKRDGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  ++  K         +    L+ P+     L             V E+++I + 
Sbjct: 487 PNTEQGQAVVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KLS  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++L+LI++KK   
Sbjct: 606 TPAAISLMLIHLKKRGA 622


>gi|228994202|ref|ZP_04154102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus pseudomycoides DSM 12442]
 gi|228765654|gb|EEM14308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus pseudomycoides DSM 12442]
          Length = 629

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCKGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  DE+   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDEKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKLRLESIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   +    + E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGIR--ASDLLRRPEMTYEHIRILAPSEVEIHDEIAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|237747167|ref|ZP_04577647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes HOxBLS]
 gi|229378518|gb|EEO28609.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes HOxBLS]
          Length = 640

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/626 (47%), Positives = 405/626 (64%), Gaps = 12/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA V+A++G +T LITH   T+G +SCNP+IGG+GK HLVRE+DA
Sbjct: 6   NFDVIVVGGGHAGTEAALVSARMGRNTLLITHNFETLGQLSCNPSIGGIGKSHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M   AD AGIQFRVLN  KGPAVR  R Q DR +YR A++ E+ +QENL + Q +V
Sbjct: 66  LGGVMALAADKAGIQFRVLNSSKGPAVRATRVQIDRVIYRQAIRYELENQENLFLFQQQV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  ++ +  +     R S VVLT GTFL G I +G      GR GD P+ +L  
Sbjct: 126 DDLIVEQGKVAGVRTEGGVEFRSSAVVLTAGTFLDGKIFVGLNSYSGGRSGDVPAIALAK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECGI 242
              + +   GRLKTGTP R+DG+TI +   ++Q+ D   IP FS   +  +   Q+ C I
Sbjct: 186 FLKELELPQGRLKTGTPPRIDGRTIDFSVMKEQWGDFDPIPVFSLRGNVSMHPEQLPCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +++G I+  GPRYCPSIEDKI RF ++N HQIFLEPEGL T
Sbjct: 246 THTNSGTHDIIRSGLDRSPLFTGVIEGVGPRYCPSIEDKIHRFSDKNSHQIFLEPEGLKT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP + Q + + +IPGLEK +I+RPGYAIEYD+ +P+ L  +LET++ISG
Sbjct: 306 HEYYPNGISTSLPFDTQIELVHSIPGLEKAHILRPGYAIEYDFYDPRCLKSSLETRQISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+AR     +     R ++Y+GVMIDDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAARYVTGDEPWVPKRNEAYLGVMIDDLITQGVNE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G K+GC+ + + + F +  ++       +KS  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTELGYKIGCVSKEQWENFQRKKEKIAREIERMKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDARKFSSLV 532
           +    L    +  +  K   +  +  + L  PD +   L S+            +     
Sbjct: 486 VHPSMLSVKEAERVIGKGIEREYSLADLLRRPDVTYDGLMSMISVENGNWKTDEELDGSE 545

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ+ E K  ++ E   +P++ +YS + ALS E+++KL   KP  L
Sbjct: 546 KEQVEIQIKYAGYIERQLREVKRQQYYENLRLPENMNYSEVNALSFEVRQKLDKQKPETL 605

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            QAS+I G+TPAA++LLLIY+KK  +
Sbjct: 606 GQASRISGVTPAAISLLLIYLKKQGL 631


>gi|308188710|ref|YP_003932841.1| glucose-inhibited division protein A [Pantoea vagans C9-1]
 gi|308059220|gb|ADO11392.1| Glucose-inhibited division protein A [Pantoea vagans C9-1]
          Length = 629

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 390/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L            RLKTGTP R+D +TI +     Q  D  +  FSFM +   + Q +
Sbjct: 181 IPLAKRLRALPLRVNRLKTGTPPRIDARTIDFSVLSPQHGDNPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCWITHTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AG+N+AR+S   +     R  +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGMLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNQKLEAIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           + + +  K+   T ++        K  +  + L  P+ +   L ++             E
Sbjct: 481 RDIWVHPKSEHVTEVNTVLSAPLTKEASGEDLLRRPELTYLKLMTLDAFGPALADEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E       E  L+P + DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQEEIDRQLRNENTLLPVELDYRQVNGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A++I G+TPAA+++LLIY+KK  +
Sbjct: 601 ATRISGITPAAISILLIYLKKQGL 624


>gi|172059160|ref|YP_001806812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ambifaria MC40-6]
 gi|205831492|sp|B1YQK2|MNMG_BURA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171991677|gb|ACB62596.1| glucose inhibited division protein A [Burkholderia ambifaria
           MC40-6]
          Length = 656

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 388/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   + S+            D 
Sbjct: 482 KSTWVTPKTLPPKEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGECAPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|89074717|ref|ZP_01161175.1| glucose-inhibited division protein A [Photobacterium sp. SKA34]
 gi|89049481|gb|EAR55042.1| glucose-inhibited division protein A [Photobacterium sp. SKA34]
          Length = 629

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 389/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQEKFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q
Sbjct: 63  VDALGGLMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRVLYKAAVRNVLENQENLMIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +    +V +         VVLT GTFL G IHIG      GR GD  SN+
Sbjct: 123 QAVTDLIVENHRAVGVVTEMGLKFHAKAVVLTVGTFLGGKIHIGMENYSGGRTGDPASNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +      RLKTGTP R+D +++ +   E+Q  D     FSFM     + RQI C
Sbjct: 183 LADRLRELPLRVDRLKTGTPPRIDARSVDFSVLEEQHGDNPTPTFSFMGKSSDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 FITYTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T E K I
Sbjct: 303 TTNELYPNGISTSLPFDVQMQIVRSMQGFENASIMRPGYAIEYDFFDPRDLKQTFENKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A +    D     R  +Y+GV+IDDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLMAGMNAALQVQDKDGWSPRRDQAYMGVLIDDLSTIGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G + G + + R  RF + I+     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTPMGREFGLVDDARWSRFNQKIENMELERQRLKD 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
           + +  K+        I      +  +  + L  P+ + + L SI   A         E++
Sbjct: 483 IWINPKSDHVDELNKILKAPIAREASGEDLLRRPEVTYEQLTSIETFAPALDDREAREQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D DYS++  LSNE+  KL+  KP ++  AS
Sbjct: 543 EIQVKYQGYIDRQRDEVEKSLRHETTKLPFDIDYSNVKGLSNEVVAKLNDAKPESIGMAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|237729052|ref|ZP_04559533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter sp. 30_2]
 gi|226909674|gb|EEH95592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citrobacter sp. 30_2]
          Length = 629

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/624 (47%), Positives = 397/624 (63%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
             L     +      RLKTGTP R+D +TI +    +Q +D  +  FSF+ D   + RQ+
Sbjct: 181 IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLGQQNSDNPMPVFSFLGDASQHPRQM 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AG+N+AR S + +     R  +Y+GV++DDL + 
Sbjct: 361 FIQGLFFAGQINGTTGYEEAAAQGMLAGLNAARLSAEKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLERIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIE 534
           KS  +     S+  ++        +  +  + L  PD +   L S+   A         E
Sbjct: 481 KSTWVNPLAESAAEVNAHLATPLSREASGEDLLRRPDMTYAQLTSLSAFAPALDDAQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ+ E +  +  E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQLEEIERQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 601 ASRISGITPAAISILLVWLKKQGM 624


>gi|294501986|ref|YP_003565686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium QM B1551]
 gi|295707337|ref|YP_003600412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium DSM 319]
 gi|294351923|gb|ADE72252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium QM B1551]
 gi|294804996|gb|ADF42062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus megaterium DSM 319]
          Length = 629

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 390/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  +A++GA T  +T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGCEAALASARMGAKTLTLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ENL ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHEMKKTLENEENLTLMQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  + + +V Q  ++ +  TVV+TTGTFLRG I +G+LK  +G     P+  L  
Sbjct: 127 EQLIVEDGVCTGVVTQTGAVYKAKTVVITTGTFLRGEIILGELKYSSGPNNQQPAIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   D  R KTGTP R++  TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGLDMVRFKTGTPPRVNSSTIDYSKTEIQPGDDVPRAFSYETTQYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +TH+II +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEQTHQIIDDNLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q Q + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEHVQRQMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ R++ + + +   R+D+YIGV++DDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLLAGINAGRRALEQEEVILGRSDAYIGVLVDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG +LG I + R  +F +   E    +  L S ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGRELGLISDERYAKFEQKKAEIEQEKKRLFSFIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG   T  + L  P+ +  ++  + P        V E+++I+
Sbjct: 487 PNEAVQQLIKEAGGSELKDGIRAT--DLLRRPEMTYTHIHQLAPADETVDPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP   DY ++  L+ E ++KL+ ++P  + QAS+I 
Sbjct: 545 VKYEGYIQKSLQQVERLKKLENKKIPDYIDYDAINGLATEARQKLNQVRPLTVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGRI 623


>gi|206558428|ref|YP_002229188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia J2315]
 gi|238693058|sp|B4E581|MNMG_BURCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|198034465|emb|CAR50330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia J2315]
          Length = 656

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/633 (45%), Positives = 387/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL +   +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + +  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLTDD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|302185834|ref|ZP_07262507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae 642]
          Length = 630

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|119475231|ref|ZP_01615584.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2143]
 gi|119451434|gb|EAW32667.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2143]
          Length = 630

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/626 (47%), Positives = 399/626 (63%), Gaps = 6/626 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIVIGGGHAG EA   +A++G  T L+TH   T+G MSCNPAIGG+GK HLVRE
Sbjct: 3   FPDQFDVIVIGGGHAGTEACLASARMGCKTLLLTHNIETLGQMSCNPAIGGIGKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D+ GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  IDALGGAMARATDSGGIQFRILNARKGPAVRATRAQADRVLYKAAIREILENQPNLSIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +S IV Q        TV+L+TGTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLIIEGDQVSGIVTQMGLKFFAPTVILSTGTFLGGKIHIGLDNHSGGRAGDPPSIT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L     +  F+  RLKTGTP R+D +++ +   E+Q+ D+     SF+     +  Q  C
Sbjct: 183 LAERLRELPFNVDRLKTGTPPRIDARSVDFSDLEEQWGDKPEPVMSFLGSLSHHPEQTCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II + +  S +Y+G I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRQGLDRSPMYTGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 KTHELYPNGISTSLPFDVQLELVRSIKGFEQAHIARPGYAIEYDYFDPRDLKYSLETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AGIN+  K    D  C  R ++YIGVMIDDL + G 
Sbjct: 363 KGLFFAGQINGTTGYEEAAAQGLLAGINAGLKVQGKDTWCPRRDEAYIGVMIDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           +EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K F++  +  +     L+S
Sbjct: 423 MEPYRMFTSRAEYRLLLREDNADLRLTEKGRQLGVVDDDRWKIFSEKRESIDKEIKRLES 482

Query: 481 LVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +  K +    ++   D    +  +  + +  P  +  ++  I     K    V E+++
Sbjct: 483 TWIQPKTVEGDIVNSLVDQAITREYSLKDLVKRPGVNYIDVAGIKGTVTK-DPQVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y GRQ  E   ++  E    P DFDY S+  LSNE+KEKLS  +P  L +A++
Sbjct: 542 IQIKYAGYIGRQADEIARLRRHENTKFPNDFDYHSIEGLSNEVKEKLSKYRPETLARAAR 601

Query: 598 IEGMTPAALNLLLIYIKK-NTVKLNE 622
           I G+TPAA++LLL+++KK   ++ N+
Sbjct: 602 IPGVTPAAISLLLVFLKKYGALEKNK 627


>gi|78064752|ref|YP_367521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia sp. 383]
 gi|123569642|sp|Q39KY9|MNMG_BURS3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77965497|gb|ABB06877.1| Glucose-inhibited division protein A subfamily [Burkholderia sp.
           383]
          Length = 656

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL +   +     GRLKTGTP R+DG++I + +  +Q  D   +P FSF+     + Q +
Sbjct: 182 SLSSRLKELKLPQGRLKTGTPPRIDGRSIDFSQLTEQPGDLDPVPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDTRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|257485605|ref|ZP_05639646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 631

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 488 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCT-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|170731465|ref|YP_001763412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia cenocepacia MC0-3]
 gi|205831493|sp|B1K1K2|MNMG_BURCC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169814707|gb|ACA89290.1| glucose inhibited division protein A [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL +   +     GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T   YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPAEEATALLGKAIEHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|170699462|ref|ZP_02890505.1| glucose inhibited division protein A [Burkholderia ambifaria
           IOP40-10]
 gi|170135611|gb|EDT03896.1| glucose inhibited division protein A [Burkholderia ambifaria
           IOP40-10]
          Length = 656

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|167587941|ref|ZP_02380329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia ubonensis Bu]
          Length = 656

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/633 (45%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           +L +   +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q +
Sbjct: 182 TLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+     + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGVNAGLYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +               D 
Sbjct: 482 KSTWVTPKTLPADEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGECGPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P+  DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQANEIERNDANENTRLPEGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 QFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|325275323|ref|ZP_08141276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas sp. TJI-51]
 gi|324099571|gb|EGB97464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas sp. TJI-51]
          Length = 630

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/617 (46%), Positives = 382/617 (61%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q    
Sbjct: 67  GGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQQSCD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM + ++  RQ+ C IT 
Sbjct: 187 MRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I ++R   F             LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I  K         +    L+ P+     L             V E+++I + 
Sbjct: 487 PNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGG-EAIDPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLGQTRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK   
Sbjct: 606 TPAAISLLLIHLKKRGA 622


>gi|320321681|gb|EFW77780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331116|gb|EFW87087.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 631

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 488 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCT-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|188535592|ref|YP_001909389.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia tasmaniensis Et1/99]
 gi|188030634|emb|CAO98530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Erwinia
           tasmaniensis Et1/99]
          Length = 629

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/618 (48%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   IIRPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIIRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEQERQRLREIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            K+       ++      K  +  + L  P+ + Q L ++   A     +   E+++I+ 
Sbjct: 487 PKSECVAEVNAVISAALTKEASGEDLLRRPEMTYQQLMTLTHFAPALADTQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  L+P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTLLPTDLDYQQVSGLSNESIAKLNDSKPSSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|331011893|gb|EGH91949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 630

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|229917462|ref|YP_002886108.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Exiguobacterium sp. AT1b]
 gi|229468891|gb|ACQ70663.1| glucose inhibited division protein A [Exiguobacterium sp. AT1b]
          Length = 628

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/617 (44%), Positives = 386/617 (62%), Gaps = 4/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIG GHAG EAA  +A++GA TA++T     +G M CNP+IGG  KG +VREIDA
Sbjct: 7   EFDVIVIGAGHAGIEAALASARMGAKTAMLTMNPDMVGFMYCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  DA  IQ ++LN  KGPAVR  R QAD+  Y+  M++ +  + NL + Q  V
Sbjct: 67  LGGEMGRAIDATYIQMKMLNTSKGPAVRALRAQADKFQYQNHMKKVLEDEPNLLLRQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +V    S  R   V++TTGTF+RG I IG+L   +G     PS  L  
Sbjct: 127 ERLLIEDGEVRGVVTNTGSEYRAKAVIVTTGTFMRGQIIIGELAYESGPNNQMPSVELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +   D  R KTGTP R+DGKTI + KTE Q  DE    FS+ +  +    QI C +T
Sbjct: 187 HLEELGLDLVRFKTGTPPRIDGKTIDYSKTEIQPGDENPSFFSYTSTDLNPIEQIPCWLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+  TH++I EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+
Sbjct: 247 YTSERTHQLIDENLHRSPMYSGAIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRDTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST++PE++QHQ +RTIPGLE   ++RPGYAIEYD + P +L+PTLETK + GL
Sbjct: 307 EIYVQGFSTSMPEDVQHQMLRTIPGLENSEMMRPGYAIEYDAVVPTQLWPTLETKAVPGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    D +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGKDPVILDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RL+ IG ++G + E R     +           L SLV+
Sbjct: 427 YRLLTSRAEYRLLLRHDNADLRLSDIGYEIGLLSEDRHTHLNEKRVAIEKEVKRLASLVV 486

Query: 484 TSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 N    S+      +   A   L  P+ S + L ++ P   + S  V E+++I+ 
Sbjct: 487 KPTPEVNAMLESVGAHPLKEATHANILLKRPEVSYEALMTVVPSTEELSYEVKEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++++  E++ IP++ DY ++  L+ E K+KL  ++P ++ QAS+I G
Sbjct: 547 KYEGYISKQLEQVEKMRRMEEKRIPENLDYDAIGGLATEAKQKLKQVRPLSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNT 617
           + PA +++LL+YI++  
Sbjct: 607 VNPADVSILLVYIEQGQ 623


>gi|312964009|ref|ZP_07778480.1| glucose inhibited division protein A [Pseudomonas fluorescens WH6]
 gi|311282044|gb|EFQ60654.1| glucose inhibited division protein A [Pseudomonas fluorescens WH6]
          Length = 630

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 386/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGVMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAVRETLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++++  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDVVKGVVTQMGLRFFAQSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQAGDTPIPVMSFMGSKEQHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNAHTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQIQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESITLEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ K              LS P+     L  +     +    V E+++I++ 
Sbjct: 487 PGTEQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGSGAE-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTKLPMDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|70733509|ref|YP_263284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens Pf-5]
 gi|81170572|sp|Q4K399|MNMG_PSEF5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68347808|gb|AAY95414.1| glucose inhibited division protein A [Pseudomonas fluorescens Pf-5]
          Length = 630

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 383/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAVREILENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDVRWAAFCKKREGIAQEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ K              LS P+     L  +     +    V E+++I++ 
Sbjct: 487 PGTEQGDAIAQKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DYS +  LS E++ KL   +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTKLPVDIDYSGISGLSKEIQSKLGATRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|15603350|ref|NP_246424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431542|sp|P57945|MNMG_PASMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12721869|gb|AAK03569.1| GidA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 629

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVRE
Sbjct: 3   YTENYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +QENLD+ Q
Sbjct: 63  IDAMGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQENLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     +++ +  +V +         V+LT GTFL G IHIG      GR GD  S  
Sbjct: 123 QEVTDIILDQDRVCGVVTKMGLKFHAKAVILTAGTFLSGKIHIGLENYTGGRAGDPASVM 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   + +    RLKTGTP R+D +TI +    KQ  DE+L  FSFM     + RQI C
Sbjct: 183 LADRLRELNLRVDRLKTGTPPRIDARTIDFSVLAKQHGDEKLPVFSFMGSVDQHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ERN HQI+LEPEGL
Sbjct: 243 FITHTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFSERNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +YPNGIST+LP ++Q + + ++ G+EK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEIYPNGISTSLPFDVQMKIVNSMKGMEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA QGL+AGIN+     + +     R  +YIGV++DDL + G 
Sbjct: 363 RGLFFAGQINGTTGYEEAAGQGLLAGINAGLFVQEKEAWFPRRDQAYIGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E+R  RF + ++     R  L+ 
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADSRLTPIAHQLGLIDEKRWARFNQKMENIELERQRLRQ 482

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
           + L  ++     +  +      +  +  + L  P+ + Q L S+ P          +E++
Sbjct: 483 IWLHPRSEYLDEANKVLGSPLVREASGEDLLRRPEMNYQILTSLTPFQPAMDDQEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E    K  E   IP  FDY+ +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIARQKRHESTAIPAHFDYTVVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGVTPAAISILLVSLKKQGM 624


>gi|330881914|gb|EGH16063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 630

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 487 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|325525645|gb|EGD03419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia sp. TJI49]
          Length = 656

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 385/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P  +   +               D     
Sbjct: 486 VTPKTLPPEEATALLGKAIDHEYSLAELLRRPGITYDGVCGLKGGECGPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++K+  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|312136219|ref|YP_004003557.1| glucose inhibited division protein a [Caldicellulosiruptor
           owensensis OL]
 gi|311776270|gb|ADQ05757.1| glucose inhibited division protein A [Caldicellulosiruptor
           owensensis OL]
          Length = 628

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 384/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ Q EV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRYRYRLYMKRVLENQENLDIRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  
Sbjct: 127 CDVLVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGQTIFDSGPDGMHPARYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + + + Q  D + +PFSF   D     Q+ C +T
Sbjct: 187 NLKKLGIEMMRFKTGTPARVHRRSLDFSQMQIQPGDLKPLPFSFENEDNFNIEQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETH+II EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD
Sbjct: 247 YTTEETHKIIRENLHRAPLFTGIISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 307 EMYVQGMSTSLPEDVQIKMYRSVIGLENVKIMRPAYAIEYDCINPIQLEPTLQFKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G +  +R ++F +  +      + +K+ V+
Sbjct: 427 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLVSSQRYEKFLQKKKMIEDEINRVKNTVI 486

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I PD       V + ++IE 
Sbjct: 487 APSEKVNKFLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPDRPDLPWYVQDEVEIEI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP   DY+ +  LS E K+KLS ++P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLAQIEQFKKLENKKIPDWVDYNQILGLSTEAKQKLSQIRPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 607 VSPADISVLLIWLE 620


>gi|54310653|ref|YP_131673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium profundum SS9]
 gi|81170567|sp|Q6LLF7|MNMG_PHOPR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46915096|emb|CAG21871.1| Putative glucose inhibited division protein A [Photobacterium
           profundum SS9]
          Length = 629

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQENFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  VDALGGLMAKATDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVREVLENQPNLMLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V +     R ++VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLIVENDRVIGVVTEMGLKFRATSVVLTVGTFLGGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +  F   RLKTGTP R+D +T+ + + + Q  D  +  FSFM     + RQI C
Sbjct: 183 LASRLRELPFRVDRLKTGTPPRIDARTVDFSRLQAQHGDNPIPTFSFMGKTSDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 YITYTNEKTHDVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T ETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQIQIVRSMDGFENAAIMRPGYAIEYDFFDPRDLKQTFETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A +S   +  C  R  +Y+GV+IDDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLLAGMNAALQSQGKEGWCPRRDQAYMGVLIDDLSTMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG + G + + R  RF + ++     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEIGREFGLVDDDRWARFNQKVENIEQERQRLKD 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERL 536
           + +   +     I+        +     + L  P+ + + L  +   +     +   E++
Sbjct: 483 IWINPNSDHVDEINKILKTPIAREANGEDLLRRPEITYKLLTQLEDFSPAHIDTQASEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D +YS +  LSNE+  KL+  KP  +  AS
Sbjct: 543 EIQVKYQGYIDRQKDEVEKSLRHETTKLPFDLEYSIVKGLSNEVIAKLTDAKPETIGMAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGM 624


>gi|304398008|ref|ZP_07379883.1| glucose inhibited division protein A [Pantoea sp. aB]
 gi|304354294|gb|EFM18666.1| glucose inhibited division protein A [Pantoea sp. aB]
          Length = 629

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 391/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDPFDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMASAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R  TVVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVDDLIVENDRVVGAVTQMGLKFRAKTVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
             L            RLKTGTP R+D +TI +     Q  D+ +  FSFM +   + Q +
Sbjct: 181 IPLAKRLRALPLRVNRLKTGTPPRIDARTIDFSVLSPQHGDDPMPVFSFMGNASQHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPE
Sbjct: 241 PCWITHTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K
Sbjct: 301 GLTSNEIYPNGISTSLPFDVQIQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AG+N+AR+S   +     R  +Y+GV++DDL + 
Sbjct: 361 FIHGLFFAGQINGTTGYEEAAAQGMLAGLNAARQSADKEGWAPRRDQAYLGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLMLREDNADLRLTETGRELGLVDDARWARFNEKLEAIEQERQRL 480

Query: 479 KSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           + + +  K+   T ++        K  +  + L  P+ +   L ++             E
Sbjct: 481 RDIWVHPKSEHVTEVNTVLSAPLTKEASGEDLLRRPELTYLKLMTLDAFGPALADEQAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E       E  L+P + DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 541 QVEIQVKYEGYIARQQEEIDRQLRNENTLLPVELDYRHVNGLSNEVIAKLNDHKPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A++I G+TPAA+++LLIY+KK  +
Sbjct: 601 ATRISGITPAAISILLIYLKKQGL 624


>gi|330876347|gb|EGH10496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 630

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 386/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAKATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I++ 
Sbjct: 487 PGTEQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCT-DPLVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|38257761|sp|Q9F5X1|MNMG_PSEU2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|10764670|gb|AAG22815.1|AF302083_1 GidA [Pseudomonas syringae pv. syringae]
          Length = 631

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVDQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCIKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 488 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCT-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|134294225|ref|YP_001117960.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia vietnamiensis G4]
 gi|166222919|sp|A4JA22|MNMG_BURVG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134137382|gb|ABO53125.1| glucose inhibited division protein A [Burkholderia vietnamiensis
           G4]
          Length = 656

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/633 (45%), Positives = 387/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDA 525
           KS  +T K L    +T++  K      +  E L  P  S   +  +            D 
Sbjct: 482 KSTWVTPKTLPPEEATALLGKPIDHEYSLAELLRRPGISYDGVCGLKGGECGPVEPLADE 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLGQIKEQVEIGIKYQGYIERQANEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|330898614|gb|EGH30033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 630

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRSQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGC-IDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|221214301|ref|ZP_03587273.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD1]
 gi|221165956|gb|EED98430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD1]
          Length = 656

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P      +               D     
Sbjct: 486 VTPKTLPPEEATALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGDCGPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++K+  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|302872909|ref|YP_003841545.1| glucose inhibited division protein A [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575768|gb|ADL43559.1| glucose inhibited division protein A [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 627

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/614 (45%), Positives = 382/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + SQENLDV QGEV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLESQENLDVRQGEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  + +   ++     VVL TGTFL G I IG+     G  G  P+  L  
Sbjct: 127 CEVLVRDGRVKGVKITTGAIFLAKAVVLATGTFLGGRIIIGETVYDGGPDGMHPARYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
           +  K   +  R KTGTPAR+  K++ + K + Q  D R +PFSF  +      Q+ C +T
Sbjct: 187 NLKKLGIEMMRFKTGTPARVHRKSLDFSKMQIQPGDLRPLPFSFENEDSFNIEQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD
Sbjct: 247 YTTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 307 EMYVQGMSTSLPEDVQIKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLVLDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G +  +R ++F +  +      + +K+ V+
Sbjct: 427 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLVSSQRYEKFLQKKKMIEDEINRVKNTVI 486

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I P        V + ++IE 
Sbjct: 487 APSEKVNKLLLGKGSSPITTGVKLSDLLKRPELSYEDLKDIDPARPDLPWYVKDEVEIEI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP   DYS +  LS E K+KLS ++P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLAQVEQFKKLENKKIPDWVDYSQILGLSTEAKQKLSQIRPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 607 VSPADISVLLIWLE 620


>gi|289649110|ref|ZP_06480453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 631

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L ++          V E+++I++ 
Sbjct: 488 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCT-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|66048356|ref|YP_238197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae B728a]
 gi|63259063|gb|AAY40159.1| Glucose-inhibited division protein A subfamily [Pseudomonas
           syringae pv. syringae B728a]
 gi|330970319|gb|EGH70385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 630

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVDQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCIKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|71734446|ref|YP_277291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|123634469|sp|Q48BF4|MNMG_PSE14 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71554999|gb|AAZ34210.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 630

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 487 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIAITGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YSGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|229593492|ref|YP_002875611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens SBW25]
 gi|229365358|emb|CAY53744.1| glucose inhibited division protein A [Pseudomonas fluorescens
           SBW25]
          Length = 631

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 386/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGVMAMATDKGGIQFRVLNSRKGPAVRATRAQADRILYKAAVRETLENQPNLWIFQQAAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRFLAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAKR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQAGDTPIPVMSFMGSKEQHPKQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQIQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F K  +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWEAFCKKRESITLEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ K              LS P+     L  +     +    V E+++I++ 
Sbjct: 488 PGTEQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTKLPTDIDYTGISGLSKEIQSKLGITRPQTLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|229000272|ref|ZP_04159841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock3-17]
 gi|228759604|gb|EEM08581.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock3-17]
          Length = 629

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCKGVITQSGAEYTAETVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  DE+   FSF T K    QI C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDEKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +S     +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAACRSLGKKEVILGRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKLRLESIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG    A + L  P+ + +++  + P   +    + E+++I+
Sbjct: 487 PRPEVQELIRSVGGSELKDGIR--ASDLLRRPEMTYEHIRILAPSEVEIHDEIAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADISILLVYIEQGKI 623


>gi|251793666|ref|YP_003008396.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Aggregatibacter aphrophilus NJ8700]
 gi|247535063|gb|ACS98309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aggregatibacter aphrophilus NJ8700]
          Length = 629

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 392/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLVREIDA
Sbjct: 6   TYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM   AD AGIQFR LN  KGPAVR  R Q DR LYR A++  + +Q NLD+ Q EV
Sbjct: 66  MGGLMATAADQAGIQFRTLNSSKGPAVRATRAQVDRVLYRQAVRIALENQPNLDIFQQEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E++  + +V +        +V+LT GTFL G IHIG      GR GD  S +L  
Sbjct: 126 SDILIEQDRATGVVTKMGLKFHAKSVILTAGTFLDGKIHIGLENYTGGRAGDPSSITLAQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                +    RLKTGTP R+D +TI +    +Q  D +L  FSFM     + RQI C IT
Sbjct: 186 RLRDLNLRVDRLKTGTPPRIDARTIDFSVLAEQHGDAQLPVFSFMGSVDQHPRQIPCFIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL T+
Sbjct: 246 HTNEKTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGLTTN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L  TLETK I GL
Sbjct: 306 EIYPNGISTSLPFDVQMGIVNSMKGLENARIIKPGYAIEYDYFDPRDLKLTLETKSIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAASQGLLAGINAGLYVQEKEAWFPRRDQAYMGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S+ L
Sbjct: 426 YRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNRKMENIEQERQRLRSIWL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
             ++     +  +      +  +  + L  P+ + Q L ++ P          IE++QI 
Sbjct: 486 HPRSEYLEEANQVLGSPLVREASGEDLLRRPEINYQILTALTPFQPPMADKEAIEQVQIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y   Q  E ++ K  E   IP  FDYS +  LSNE++ KL   +P ++ QAS+I 
Sbjct: 546 IKYQGYIEHQQEEIEKQKRHENTAIPPHFDYSKVAGLSNEVRIKLEQHRPVSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++++L+ +KK  +
Sbjct: 606 GITPAAISIILVNLKKQGM 624


>gi|289628220|ref|ZP_06461174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870069|gb|EGH04778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 630

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L ++          V E+++I++ 
Sbjct: 487 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|330976396|gb|EGH76453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 630

 Score =  809 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGC-IDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|289677542|ref|ZP_06498432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. syringae FF5]
          Length = 631

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 488 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGC-IDPQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|89092258|ref|ZP_01165212.1| glucose inhibited division protein A [Oceanospirillum sp. MED92]
 gi|89083346|gb|EAR62564.1| glucose inhibited division protein A [Oceanospirillum sp. MED92]
          Length = 631

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/621 (46%), Positives = 396/621 (63%), Gaps = 5/621 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A++GA T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   YDVIVIGGGHAGTEAALASARIGAKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M R  D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +Q+NLD+ Q    
Sbjct: 67  DGAMARATDKGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHILENQDNLDIFQQSAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  +V Q       ++VVLT GTFL GVIHIG      GR GD PS +L + 
Sbjct: 127 DLITEGEAVRGVVTQTGIRFHANSVVLTAGTFLGGVIHIGLENHSGGRAGDPPSIALADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +  F   RLKTGTP R+D +++ +   ++Q  D      S+M     + Q I C IT 
Sbjct: 187 LRELPFRVDRLKTGTPPRIDARSVDFSVMQEQPGDTPTPVMSYMGKLTDHPQQISCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH I+   +  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQ+F+EPEGL T  
Sbjct: 247 TNERTHEILRSGLDRSPMYTGVIEGVGPRYCPSIEDKIMRFADKDQHQVFVEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +++I G E  +I+RPGYAIEYD+ NP++L  TLETK ++GLF
Sbjct: 307 LYPNGISTSLPFDIQLAAVQSIRGFENAHIVRPGYAIEYDFFNPQDLKHTLETKYMNGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S +       R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSLEKAQWYPRRDEAYIGVLVDDLITLGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG +GE R + F    +     +  LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVGEERWQAFCNKREAIEQEQQRLKSTWIL 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  ++ K      +     + L  P+    +L  +  +       V E+++I++ 
Sbjct: 487 PKTPEADELAPKLKTPLTREYNLADLLKRPELVYSDLAHLKGEGVS-DEQVAEQVEIQNK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E ++++ +E   +P+DFDY  +  LSNELK KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQKDEIEQMRRQENTPLPEDFDYEKVGGLSNELKAKLQEVRPATIAQASRIQGI 605

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           TPAA++LLL+Y+KK  +   +
Sbjct: 606 TPAAISLLLVYLKKQQLTKKQ 626


>gi|330890256|gb|EGH22917.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 630

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L ++          V E+++I++ 
Sbjct: 487 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|331017733|gb|EGH97789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 630

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 384/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I+  
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCA-DPLVAEQVEIKIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|77920731|ref|YP_358546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pelobacter carbinolicus DSM 2380]
 gi|123573042|sp|Q39ZT1|MNMG_PELCD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77546814|gb|ABA90376.1| glucose inhibited division protein GidA [Pelobacter carbinolicus
           DSM 2380]
          Length = 619

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/616 (49%), Positives = 398/616 (64%), Gaps = 1/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + Y+VIV+G GHAGCEAA  +A++G +T L+      +  MSCNPAIGGL KGHLVRE
Sbjct: 4   YGKDYEVIVVGAGHAGCEAALASARMGCNTLLLNLHLDAVAQMSCNPAIGGLAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M RV DA GIQFR LN KKGPAVR  R QADR  Y+  M++ + +Q  LD+ Q
Sbjct: 64  IDALGGEMARVIDATGIQFRTLNTKKGPAVRATRAQADRRAYQFHMKQVVENQPALDLKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V+    + + +S +   D       TVVLTTGTF+RG+IH+G    P GR G+ PS  
Sbjct: 124 GSVSRLILQGDKVSGVETTDGLRFFGQTVVLTTGTFMRGLIHVGLQHFPGGRAGEPPSLG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +     GRLKTGTPARLDG TI +D+   Q  D    PFS  T+KIT+ Q+ C 
Sbjct: 184 LSDHLAELGLRVGRLKTGTPARLDGNTIDYDRLVPQHGDVPPKPFSADTEKITSPQVPCF 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II + +  S +Y G I+  GPRYCPSIEDKI+RF +++ H +FLEPEGL 
Sbjct: 244 ITATNAHTHDIIRQGLDRSPLYQGVIEGVGPRYCPSIEDKIMRFPDKDSHHVFLEPEGLG 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q  F+RTIPGLE V I+RPGYAIEYD+++P +L P+LETKKI 
Sbjct: 304 TREVYPNGVSTSLPPDVQLAFLRTIPGLEHVEIMRPGYAIEYDFVDPIQLKPSLETKKIR 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQINGT+GYEEAAAQGL+AGIN+         +   R  +YIGVMIDDL + G  
Sbjct: 364 NLFLAGQINGTSGYEEAAAQGLMAGINAVHALRDCPPVVLGRDQAYIGVMIDDLVTCGTS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R +RF + + +    R  L+  
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADQRLTPLGHQVGLVSDERWQRFTRKMDKIVEGRDFLEKR 483

Query: 482 VLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            L+S +  +   +  +      +  + L  PD +I++L             V E+LQIE 
Sbjct: 484 RLSSSDKEAIGRLGLEDLKNGLSLVQILRRPDINIEDLVFCDDRLADIPENVREQLQIEI 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ    +  +  E+  IP D DYS +  LS E++EKL  ++P NL QA++I G
Sbjct: 544 KYEGYIARQYEMVERFRRSEQIAIPSDMDYSPIEGLSIEVREKLQKVRPQNLGQAARIPG 603

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA+ +L + +++N
Sbjct: 604 VTPAAVAILSVLLRRN 619


>gi|182416733|ref|ZP_02948132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237669669|ref|ZP_04529647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379390|gb|EDT76885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237654903|gb|EEP52465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 628

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/620 (45%), Positives = 396/620 (63%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDA
Sbjct: 9   QFDVIVVGAGHAGCEAALASARMGLNTLVCTINLDSIALMPCNPNIGGTAKGHLVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M++ +  Q+NL + Q EV
Sbjct: 69  LGGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKKVLEEQDNLKIRQIEV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +S +V ++ ++ +C  VVL TGT+L+G I IG++    G  G  P+N L  
Sbjct: 129 TELIVEDGKVSGVVTKNGAVFKCKAVVLATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQ 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ K++ + K  +Q  D++++PFSFM+ K+   Q+ C +T 
Sbjct: 189 SLLDLGISLRRFKTGTPARINSKSVDFSKMIEQNGDDKIVPFSFMSGKLQKEQVACYLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEG++T  
Sbjct: 249 TNEETHNIIRENINRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKTQHQIFVEPEGMDTLE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G S++LPEE+Q + +RT+PGLE V ++R  YAIEYD I+P +L PTLE K I GL+
Sbjct: 309 MYVGGFSSSLPEEVQIKMLRTLPGLENVEMMRTAYAIEYDSIDPTQLKPTLEFKNIDGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA AQGLVAG+N+A K    + +  +R+D+YIGV+IDDL +KG  EPY
Sbjct: 369 GAGQLNGSSGYEEAGAQGLVAGVNAALKIKNQEPLILTRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G + E R   F    +        LK+L +T
Sbjct: 429 RMMTSRAEYRLLLRQDNADLRLTEMGHRVGLVTEERYNTFLTRKKNIEDELERLKTLKVT 488

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +    SI+     K  + YE +  P+     L  + P+    S  + E++ + + 
Sbjct: 489 NKKEVNEFLVSINSTPLRKAISFYELMQRPELEYFQLAQLDPERPDLSDDIGEQINVLTK 548

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   QM +  + K  EK+L+PKD DY+ +  L  E  +KLS +KP ++ QAS+I G+
Sbjct: 549 YEGYIQSQMEQVSQFKKFEKKLLPKDIDYNDVSGLRTEAVQKLSNIKPISIGQASRISGV 608

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           +PA +++LLIY++    K +
Sbjct: 609 SPADISVLLIYLEHQYGKQS 628


>gi|221202191|ref|ZP_03575226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2M]
 gi|221208748|ref|ZP_03581747.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2]
 gi|221171380|gb|EEE03828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2]
 gi|221177985|gb|EEE10397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans CGD2M]
          Length = 656

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    ++++  K      +  E L  P      +               D     
Sbjct: 486 VTPKTLPPEEASALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGECGPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++K+  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|138897066|ref|YP_001127519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus thermodenitrificans NG80-2]
 gi|196249887|ref|ZP_03148583.1| glucose inhibited division protein A [Geobacillus sp. G11MC16]
 gi|166222936|sp|A4ITX0|MNMG_GEOTN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134268579|gb|ABO68774.1| Glucose inhibited division protein A [Geobacillus
           thermodenitrificans NG80-2]
 gi|196210763|gb|EDY05526.1| glucose inhibited division protein A [Geobacillus sp. G11MC16]
          Length = 629

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +Q+NL ++QG+V
Sbjct: 67  LGGEMGKNIDKTYIQIRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQKNLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITQTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDEEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R + F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQAFLAKKEAIEREKKRLQTVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG    A + L  P+ + +++  + P     +  V E+++I+
Sbjct: 487 PTPEVQEVIRQAGGSELKDGIR--AADLLRRPEMTYEHIQKLAPADEDIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDAIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|161523273|ref|YP_001578285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans ATCC 17616]
 gi|189351954|ref|YP_001947582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia multivorans ATCC 17616]
 gi|238687049|sp|A9AJF1|MNMG_BURM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160340702|gb|ABX13788.1| glucose inhibited division protein A [Burkholderia multivorans ATCC
           17616]
 gi|189335976|dbj|BAG45046.1| glucose inhibited division protein A [Burkholderia multivorans ATCC
           17616]
          Length = 656

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 386/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDCVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLELVHSMRGLEQAHILRPGYAIEYDYFDPRALKASLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGVNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTRGVAE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     LK+  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDVRWDAFCRKRDAVSRETERLKTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P      +               D     
Sbjct: 486 VTPKTLPPEEATALLGKPIDHEYSLAELLRRPGVDYDGVCGLKGGECGPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQVEIGIKYQGYIERQATEIERNDANENTRLPDGIDYREVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++K+  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|104784445|ref|YP_610943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas entomophila L48]
 gi|122401169|sp|Q1I2H6|MNMG_PSEE4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|95113432|emb|CAK18160.1| glucose-inhibited division protein A [Pseudomonas entomophila L48]
          Length = 630

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/621 (45%), Positives = 382/621 (61%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   FPSRFEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D +GIQFRVLN +KGPAVR  R QADR +Y+  ++  + +Q NL + Q
Sbjct: 63  IDALGGAMALATDMSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLWIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E++ +  +V Q        +VVLT+GTFL G+IHIG      GR GD P+N+
Sbjct: 123 QSCDDLIVEQDQVKGVVTQMGLRFFADSVVLTSGTFLGGLIHIGLQNYSGGRAGDPPANA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIEC 240
           L     +     GRLKTGTP R+DG+++ +    +Q  D  +   SFM +  +  RQ+ C
Sbjct: 183 LAQRMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAAMHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL
Sbjct: 243 WITHTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQLEIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G 
Sbjct: 363 GGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRESWCPRRDEAYIGVLVDDLITLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F    +        LKS
Sbjct: 423 QEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDARWAAFCAKREGIEREEQRLKS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +        ++  K         +    L+ P+     L             V E+++
Sbjct: 483 TWVRPGTPQGQAVVDKFGTPLAHEYSLLNLLARPEVDYAGLIEATGG-EVIDPQVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QAS+
Sbjct: 542 IKTKYAGYIDRQQEEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLEQTRPETLGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLLI++KK   
Sbjct: 602 IPGVTPAAISLLLIHLKKRGA 622


>gi|330937306|gb|EGH41314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 630

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFAESVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+ +K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGNKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDIWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L SI          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLISITGQGC-IDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTGLPEDIDYAAISGLSKEIQSKLGITRPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|302063884|ref|ZP_07255425.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato K40]
          Length = 631

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I++ 
Sbjct: 488 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCA-DPLVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 607 TPAAISLLMIHLKKRGA 623


>gi|157964062|ref|YP_001504096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella pealeana ATCC 700345]
 gi|189039358|sp|A8HAH4|MNMG_SHEPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157849062|gb|ABV89561.1| glucose inhibited division protein A [Shewanella pealeana ATCC
           700345]
          Length = 629

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/622 (45%), Positives = 380/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q
Sbjct: 63  IDALGGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQANLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V Q         VVLT GTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLVVENGKVVGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   +     GRLKTGTP R+D  TI + +  +Q  D+ L   SF+ D      Q+ C
Sbjct: 183 LAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDDPLPVMSFIGDVNDHPEQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +YSG I+  GPRYCPSIEDK+ RF ++  HQIF+EPEGL
Sbjct: 243 HITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKVNRFADKTSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R  +Y+GV++DDL++ G 
Sbjct: 363 AGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWALFSEKMESIETELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  T  + L  P+     L SI             E++
Sbjct: 483 QWVHPNSPLVEALNPHLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPSLEDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  K++  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++KK  +
Sbjct: 603 RISGMTPAAISILLVHLKKRGL 624


>gi|56422028|ref|YP_149346.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Geobacillus kaustophilus HTA426]
 gi|297531686|ref|YP_003672961.1| glucose inhibited division protein A [Geobacillus sp. C56-T3]
 gi|81170543|sp|Q5KU58|MNMG_GEOKA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56381870|dbj|BAD77778.1| glucose-inhibited division protein [Geobacillus kaustophilus
           HTA426]
 gi|297254938|gb|ADI28384.1| glucose inhibited division protein A [Geobacillus sp. C56-T3]
          Length = 629

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDKEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R ++F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQKFLAKKEAIEREKKRLQTVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG    A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PTPKVQEVIREAGGSELKDGIR--AADLLRRPEMTYEHIRKLAPADEEIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDAIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|213968448|ref|ZP_03396591.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato T1]
 gi|301384265|ref|ZP_07232683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato Max13]
 gi|302131968|ref|ZP_07257958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926736|gb|EEB60288.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato T1]
          Length = 630

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I++ 
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCA-DPLVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|237801670|ref|ZP_04590131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024529|gb|EGI04585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 630

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAIATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIEQEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I          V E+++I++ 
Sbjct: 487 PGTEQGDAIAAHFGTPLTHEYNLLNLLTRPEIDYASLINITGQGC-IDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|85060383|ref|YP_456085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sodalis glossinidius str. 'morsitans']
 gi|123518619|sp|Q2NQ95|MNMG_SODGM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|84780903|dbj|BAE75680.1| glucose inhibited division protein A [Sodalis glossinidius str.
           'morsitans']
          Length = 629

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/620 (45%), Positives = 387/620 (62%), Gaps = 5/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   HFDVIIIGGGHAGTEAAMASARMGCQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM +  D  GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  MGGLMAQAIDKGGIQFRILNASKGPAVRATRAQADRVLYRQAVRGALENQPNLMIFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIMEGDRVVGAVTQIGLKFRARAVVLTVGTFLDGKIHIGMDHYSGGRAGDPPSVSLSR 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D  +I + +   Q  D+ L  FSF+     + RQI C IT
Sbjct: 186 RLRELPFRVNRLKTGTPPRIDAHSIDFSRLATQHGDDPLPVFSFLGSADQHPRQIPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++
Sbjct: 246 YTNDKTHEVIRQNLDRSPMYAGIIEGVGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + + ++ GLE   I+RPGYAIEYD+ +P++L  TLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMKIVHSMQGLENARIVRPGYAIEYDFFDPRDLKLTLESKLIEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AG+N+AR +   D     R  +Y+GV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGMLAGLNAARLAMGKDGWSPRRDQAYLGVLVDDLCTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R +RF    ++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTETGRQLGMVDDVRWERFCAKQEQIERERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              +     ++        +     E L  P+     L  +         S   E+++I+
Sbjct: 486 HPGSDGVEQLNPLLKASLTREANGEELLRRPEMDYARLTHLERFGPALVDSQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E       E  L+P   D+S++  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 IKYQGYIARQQEEIARQMRNEHTLLPAAMDFSTVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+TPAA+++LL+++KK  ++
Sbjct: 606 GVTPAAISILLVWLKKQGLR 625


>gi|330961498|gb|EGH61758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQLGMRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIALEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L +I  +      LV E+++I++ 
Sbjct: 487 PGTEQGDAIASHFGTPLTHEYNLLNLLTRPEIDYASLIAITGEGCT-DPLVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|167626210|ref|YP_001676504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella halifaxensis HAW-EB4]
 gi|189039357|sp|B0TQG5|MNMG_SHEHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167356232|gb|ABZ78845.1| glucose inhibited division protein A [Shewanella halifaxensis
           HAW-EB4]
          Length = 629

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 379/622 (60%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  +A++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALASARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  +  Q NL + Q
Sbjct: 63  IDALGGAMAVATDFAGIQFRTLNSSKGPAVRATRAQADRALYRHKIQEILQHQTNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N +  +V Q         VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLVVENNKVIGVVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   +     GRLKTGTP R+D  TI +    +Q  D  L   SF+ D      Q+ C
Sbjct: 183 LAHRLRELPIRVGRLKTGTPPRIDANTIDFSLMTEQKGDNPLPVMSFIGDVNDHPEQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YITHTNERTHDIIRGGLDRSPMYSGIIEGIGPRYCPSIEDKINRFADKTSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEA AQGL+AG+N++ +    +     R  +Y+GV++DDL++ G 
Sbjct: 363 SGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWAPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + ++R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDKRWALFSEKMESIETELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  T  + L  P+     L SI             E++
Sbjct: 483 QWIHPNSPLVEALNPNLNTPITREATFEDLLRRPEMDYPKLMSIDGFGPGLEDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  K++  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQGEIDKAIRHETTLLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++KK  +
Sbjct: 603 RISGMTPAAISILLVHLKKRGL 624


>gi|90409269|ref|ZP_01217371.1| glucose-inhibited division protein A [Psychromonas sp. CNPT3]
 gi|90309629|gb|EAS37812.1| glucose-inhibited division protein A [Psychromonas sp. CNPT3]
          Length = 628

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/625 (47%), Positives = 400/625 (64%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVI+IGGGHAG EAAA +A++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YHEHFDVIIIGGGHAGTEAAASSARMGLNTLLLTHNIETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM    D AGIQFR LN  KGPAVR  R QADR LY+ A++ ++ +QENL + Q
Sbjct: 63  VDALGGLMANATDKAGIQFRTLNSSKGPAVRATRAQADRLLYKAAIREKLENQENLKIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + ++ +V +        +VVLT GTFL G+IHIG      GR GD  S  
Sbjct: 123 QEVEDLIVENDQVTGVVTKMGVKFSAKSVVLTVGTFLNGLIHIGLKNYSGGRAGDPASIG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L           GRLKTGTPAR+D ++I +   E Q  D  +  FSFM     + RQI C
Sbjct: 183 LAQRLKDLPIRMGRLKTGTPARIDARSIDFSVLEVQHGDTPIPTFSFMGKASDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II  ++  S +Y+G I   GPRYCPSIEDKI+RF ++N HQIF+EPEGL
Sbjct: 243 YITHTNEKTHDIIRNSLDRSPMYTGVIDGVGPRYCPSIEDKIMRFADKNSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VYPNGIST+LP ++Q +FI+++ G E   + RPGYAIEYDY +P++L  TLE+K I
Sbjct: 303 TTHEVYPNGISTSLPFDVQIEFIQSMKGFENAFLTRPGYAIEYDYCDPRDLKSTLESKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A  S   +     R ++Y+GV+IDDL++ G 
Sbjct: 363 HGLFFAGQINGTTGYEEAAAQGLLAGMNAALYSQDKEGWSPRRNEAYLGVLIDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD+RLT IG + G I + R K F++  +        LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADSRLTAIGREYGVIDDARWKMFSEKQETIELESQRLKG 482

Query: 481 LVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   ++++  I+    +   +  T    +  P+    +L +I             E++
Sbjct: 483 QWVNPNSVNAAQINALLKQPMQRESTLEAMIRRPEIKYLDLMNIEGLGPAVSDPKAAEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ E ++ K  E  L+P D DY  +  LSNE   KL+ +KP ++ +AS
Sbjct: 543 EIKIKYQGYIDRQLDEIEKSKRNENTLLPLDIDYQIVKGLSNEAIAKLNEMKPESIGKAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G+TPAA+++LLIY+KKN ++ N
Sbjct: 603 RIPGITPAAISILLIYLKKNGLRRN 627


>gi|295678144|ref|YP_003606668.1| glucose inhibited division protein A [Burkholderia sp. CCGE1002]
 gi|295437987|gb|ADG17157.1| glucose inhibited division protein A [Burkholderia sp. CCGE1002]
          Length = 652

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/631 (45%), Positives = 390/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLIVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDYSQLEEQPGDLDPVPVFSFLGRVEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQI+LEPE
Sbjct: 242 PCWVTHTNQRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIYLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMQGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQG++AGIN+       +  C  R  +Y+GV++DDL ++
Sbjct: 362 VINGLFFAGQINGTTGYEEAAAQGVLAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETQRL 481

Query: 479 KSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           +S  +  K LS   +T +  K      +  + L  P  S   + ++       P+A    
Sbjct: 482 RSTWVNPKTLSAEQATELLGKPIDHEYSLADLLRRPGVSYDGVCALRDGTCGAPEALAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  + +E   +P+  DY+ +  LS E ++KL 
Sbjct: 542 PVLLGQIKEQIEIGVKYQGYIDRQAGEIERNEAQENTRLPEGLDYTEVRGLSFEARQKLM 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|90581140|ref|ZP_01236939.1| glucose-inhibited division protein A [Vibrio angustum S14]
 gi|90437661|gb|EAS62853.1| glucose-inhibited division protein A [Vibrio angustum S14]
          Length = 629

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 388/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQEKFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL V Q
Sbjct: 63  VDALGGLMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVRNVLENQENLMVFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +    +V +         VVLT GTFL G IHIG      GR GD  SN+
Sbjct: 123 QAVTDLIVENHRAVGVVTEMGLKFHGKAVVLTVGTFLGGKIHIGMENYSGGRTGDPASNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +      RLKTGTP R+D +++ +   E+Q  D     FSFM     + RQI C
Sbjct: 183 LADRLRELPLRVDRLKTGTPPRIDARSVDFSVLEEQHGDNPTPTFSFMGKSSDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 FITYTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T E K I
Sbjct: 303 TTNELYPNGISTSLPFDVQMQIVRSMQGFENATIMRPGYAIEYDFFDPRDLKQTFENKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A +    +     R  +Y+GV+IDDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLMAGMNAALQVQDKEGWSPRRDQAYMGVLIDDLSTIGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G + G + + R  RF + I+     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTPMGREFGLVDDARWSRFNQKIENMELERQRLKD 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
           + +  K+        I      +  +  + L  P+ + + L SI   A         E++
Sbjct: 483 IWINPKSDHVDELNKILKAPIAREASGEDLLRRPEVTYEQLTSIETFAPALDDIEAREQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D DYS++  LSNE+  KL+  KP ++  AS
Sbjct: 543 EIQVKYQGYIDRQRDEVEKSLRHETTKLPFDIDYSNVKGLSNEVVVKLNDAKPESIGMAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|307255565|ref|ZP_07537370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307260016|ref|ZP_07541728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306861414|gb|EFM93403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865852|gb|EFM97728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 630

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|261420901|ref|YP_003254583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus sp. Y412MC61]
 gi|319768572|ref|YP_004134073.1| glucose inhibited division protein A [Geobacillus sp. Y412MC52]
 gi|261377358|gb|ACX80101.1| glucose inhibited division protein A [Geobacillus sp. Y412MC61]
 gi|317113438|gb|ADU95930.1| glucose inhibited division protein A [Geobacillus sp. Y412MC52]
          Length = 629

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 393/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   TYDVIVVGAGHAGCEAALASARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDKEPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKVVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ + + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRKLLETIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAHRALGREEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R ++F    +     +  L+++++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYRIGLISEERYQKFLAKKEAIEREKKRLQTVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG    A + L  P+ + +++  + P   + +  V E+++I+
Sbjct: 487 PTPKVQEVIREAGGSELKDGIR--AADLLRRPEMTYEHIRKLAPADEEIAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + E + +K  E + IP+D DY  +  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQEVERLKKMENKKIPEDIDYDGIQGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|229542321|ref|ZP_04431381.1| glucose inhibited division protein A [Bacillus coagulans 36D1]
 gi|229326741|gb|EEN92416.1| glucose inhibited division protein A [Bacillus coagulans 36D1]
          Length = 629

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEA   AA++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 8   DYDVIVVGAGHAGCEAGLAAARIGAKTLMITINLDMIAYMPCNPSIGGPAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y+  M++ I +QENL ++QG V
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVQALRAQADKVEYQREMKKTIENQENLTLLQGMV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V +  +     TVVLTTGTFLRG I IG+LK  +G     PS +L  
Sbjct: 128 EELVLEDGVCKGVVTKTGAKYTAKTVVLTTGTFLRGEIIIGELKYSSGPNNQQPSIALAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++GKTI + KTE Q  D     FS+ T K+   Q+ C +T 
Sbjct: 188 KLEELGFDLVRFKTGTPPRVNGKTIDYSKTEIQPGDLEPRAFSYETTKMITDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEG +T+ 
Sbjct: 248 TNERTHAIIDANLGRAPMFSGMIKGTGPRYCPSIEDKVVRFHDKPRHQLFLEPEGRHTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD I P +L+PTLETKK+  L+
Sbjct: 308 VYVQGLSTSMPEEVQREILASIEGLEHAKMMRPGYAIEYDAITPTQLWPTLETKKVKNLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A+++   + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGIIAGINAAQRAMGKEELVLGRSDAYIGVLIDDLVTKGTREPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R ++F    Q        LKS++L 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGYQIGLISEERYRKFTAKKQAIEAEIKRLKSVILK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG    A + L  P+   +++ ++ P   + S  V E+++I+
Sbjct: 488 PDEKTQTLIREAGGSELKDGI--HAADLLKRPEMRYEHIKALVPPEMELSPEVEEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP D DY ++  L+ E ++KL+ ++P ++ QAS+I 
Sbjct: 546 IKYEGYIAKSLQQVERMKKLEDKKIPSDIDYDAIHGLATEARQKLNKVRPISIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|52426409|ref|YP_089546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mannheimia succiniciproducens MBEL55E]
 gi|81170554|sp|Q65PZ9|MNMG_MANSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52308461|gb|AAU38961.1| GidA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 629

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 398/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YSENYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVKVALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     +  +V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVATRMGLKFKTKSVILTAGTFLGGKIHIGLDNYTGGRAGDPASIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +     +    RLKTGTP RLD +TI +D   KQ  D +L  FSFM     + RQI C
Sbjct: 183 LADRLRDLNLRVARLKTGTPPRLDARTINFDILAKQHGDAQLPVFSFMGSVDQHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 FITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +YPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYD+ +P++L PTLETK I
Sbjct: 303 TSQEIYPNGISTSLPFDVQMKIVNSMVGLEKTRIVKPGYAIEYDFFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA+QGL+AGIN+     + +     R  +Y+GV++DDL + G 
Sbjct: 363 KGLFFAGQINGTTGYEEAASQGLLAGINAGLFVQEKESWFPRRDQAYMGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + ++     R  L++
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADSRLTPIAHELGLIDENRWARFNQKMENIERERQRLRN 482

Query: 481 LVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
           + +  ++     I+        +  +  + L  P+ + Q L ++            +E++
Sbjct: 483 IWIHPRSEHLDVINEVLSSPLVREASGEDLLRRPEINYQILTALDLFKPAMDDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP +FDY+ +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAVKYQGYIEHQQEEIEKQKRHENTAIPDNFDYTLVAGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGVTPAAISILLVNLKKQGM 624


>gi|312128798|ref|YP_003993672.1| glucose inhibited division protein a [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778817|gb|ADQ08303.1| glucose inhibited division protein A [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 628

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/614 (44%), Positives = 385/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      +IG+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSIGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M++ + SQENLD+ Q EV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKKVLESQENLDIRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  
Sbjct: 127 CEVLVEDGRVKGVKITTGAIFLAKAVVLATGTFLGGKVIIGETVFDSGPDGMHPARYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T
Sbjct: 187 NLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIEQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD
Sbjct: 247 YTTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKVVRFADKPRHQVFIEPTGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 307 EMYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G I ++R ++F +  +      + +K+ V+
Sbjct: 427 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLISQQRYEKFLQKKKMIEDEINRVKNTVI 486

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I P        V + ++IE 
Sbjct: 487 APSEKVNKLLQEKGSSPISTGVKLSDLLKRPELSYEDLKEIDPARPDLPWYVQDEVEIEI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+   ++ K  E + IP+  DYS +  LS E K+KLS ++P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLERIEQFKKLENKKIPEWVDYSKIIGLSTEAKQKLSQIRPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 607 VSPADISVLLIWLE 620


>gi|238795163|ref|ZP_04638752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia intermedia ATCC 29909]
 gi|238725521|gb|EEQ17086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia intermedia ATCC 29909]
          Length = 629

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/619 (47%), Positives = 393/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLQNYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSKKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + +   I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVDEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPTDLDYHQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|28872709|ref|NP_795328.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|38257457|sp|Q87TS3|MNMG_PSESM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28855965|gb|AAO59023.1| glucose-inhibited division protein A [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 630

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 386/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  ++  SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPILVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I++ 
Sbjct: 487 PGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCA-DPLVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|298489532|ref|ZP_07007541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298155959|gb|EFH97070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 630

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRETLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGMRIFADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTRE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+                L+ P+    +L ++          V E+++I++ 
Sbjct: 487 PGTAQGDAIAEHFGTPLTHEYNLLNLLTRPEIDYASLIALTGQGCT-DPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+++  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYAAISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|126440375|ref|YP_001060975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 668]
 gi|167826386|ref|ZP_02457857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 9]
 gi|167847905|ref|ZP_02473413.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei B7210]
 gi|226193173|ref|ZP_03788783.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pakistan 9]
 gi|254298691|ref|ZP_04966142.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           406e]
 gi|166222918|sp|A3NF54|MNMG_BURP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126219868|gb|ABN83374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 668]
 gi|157808631|gb|EDO85801.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           406e]
 gi|225934773|gb|EEH30750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pakistan 9]
          Length = 657

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPVDEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|302880136|ref|YP_003848700.1| glucose inhibited division protein A [Gallionella capsiferriformans
           ES-2]
 gi|302582925|gb|ADL56936.1| glucose inhibited division protein A [Gallionella capsiferriformans
           ES-2]
          Length = 627

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/616 (46%), Positives = 401/616 (65%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA V+A+ G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALVSARAGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KG AVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDIGGIQFRILNSSKGYAVRATRAQADRMLYKQAIRTMLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ ++ +V Q        TVVLT GTFL G+IH+G+    AGR GD PS SL + 
Sbjct: 127 DLLVEQDKVTGVVTQLGLRFSAKTVVLTAGTFLGGLIHVGQANYQAGRAGDPPSVSLSHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
             + +   GRLKTGTP R+DG++I +   ++Q  D+ +  FSFM ++ +  RQ+ C IT 
Sbjct: 187 LRELNLPVGRLKTGTPPRIDGRSIDYSVLQEQPGDDPVPVFSFMGNRAMHPRQMPCWITE 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH II   +  S +++G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T  
Sbjct: 247 TSERTHDIIRGGLDRSPLFTGAIEGVGPRYCPSIEDKITRFSGKTSHQIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP  L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLALVRSIKGMENAHILRPGYAIEYDYFNPCGLKSSLETKAIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N++ +  ++D  C  R ++Y+GVM+DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNASLQVREMDAWCPRRDEAYLGVMVDDLITQGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F    +     +  L+S  ++
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEIGRKLGIVDDARWQAFEIKREAIALEQQRLRSTWMS 486

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            +NL    +  +  K      + +E L  PD +  +L ++           V E+++I++
Sbjct: 487 PRNLPVEEAQRVLGKNIDHEYSLHELLLRPDVNYASLMTLPGAGEATPDPWVSEQVEIQA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E K  +  E + +P D DY  +  LS E+++KL+  KP  + QA++I G
Sbjct: 547 KYQGYIDRQHAEIKSSERNEVQRLPSDLDYREVRGLSIEVQQKLNTHKPETVGQAARISG 606

Query: 601 MTPAALNLLLIYIKKN 616
           +TPAA++LLL+++K+ 
Sbjct: 607 ITPAAISLLLVHLKRG 622


>gi|303249898|ref|ZP_07336100.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307250950|ref|ZP_07532876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307253322|ref|ZP_07535194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650961|gb|EFL81115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306856978|gb|EFM89108.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859186|gb|EFM91227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 630

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|254788523|ref|YP_003075952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Teredinibacter turnerae T7901]
 gi|259495854|sp|C5BKL4|MNMG_TERTT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|237684306|gb|ACR11570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Teredinibacter turnerae T7901]
          Length = 630

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/622 (45%), Positives = 390/622 (62%), Gaps = 5/622 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIVIGGGHAG EA   AA++G  T L++H   T+G MSCNPAIGG+GK HLV+
Sbjct: 2   IFPDKFDVIVIGGGHAGTEACLAAARMGCKTLLLSHNIETLGQMSCNPAIGGIGKSHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EIDALGGAMAKATDKGGIQFRVLNNRKGPAVRATRAQADRVLYKAAVREILENQPNLTIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E   +  +V Q        TVVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAADDLVVEGETVRGVVTQMGVTFLAPTVVLTAGTFLGGRIHIGLENHSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
           +L +   +      RLKTGTP R+D +++ +D  ++Q+ D+     SF+ +     RQ  
Sbjct: 182 ALADRLRELPLRVDRLKTGTPPRIDARSVNFDGLDEQWGDKPTPVMSFLGSQDDHPRQTC 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II      S +++G I+  GPRYCPSIEDK+ RF ++N HQIF+EPEG
Sbjct: 242 CWVTHTNERTHDIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP +IQ   +R+I G E  +I+RPGYAIEYD+ NP++L  +LETK 
Sbjct: 302 LTTHELYPNGISTSLPFDIQLALVRSIKGFENAHIVRPGYAIEYDFFNPQDLQYSLETKV 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEA AQGL+AG N+A K+   +  C  R  +Y+GV++DDL + G
Sbjct: 362 ISGLFFAGQINGTTGYEEAGAQGLLAGANAALKAQGKEPWCPERDQAYMGVLVDDLITMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F +  ++       ++
Sbjct: 422 TREPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDIRWAAFCEKREQIEQETQRMR 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  + + +  +  ++ K      +  +  + L  P+ +  +L  +  +A   +  V E++
Sbjct: 482 STWVQANSAEALQLADKLTAPLNREYSLLDLLKRPELTYADLGHLKGEAVA-NVQVAEQV 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + YA Y  RQ  E   ++  E   IP  FDY S+  LSNELK+KL+  +P N+ +AS
Sbjct: 541 EITAKYAGYIDRQQDEIARLRQHENTPIPASFDYDSVEGLSNELKQKLNEARPDNIARAS 600

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LL+IY+KK  +
Sbjct: 601 RIPGITPAAISLLVIYLKKRGM 622


>gi|317131001|ref|YP_004097283.1| glucose inhibited division protein A [Bacillus cellulosilyticus DSM
           2522]
 gi|315475949|gb|ADU32552.1| glucose inhibited division protein A [Bacillus cellulosilyticus DSM
           2522]
          Length = 628

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/619 (44%), Positives = 391/619 (63%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VRE+DA
Sbjct: 7   EYDVIVIGAGHAGVEAGLAAARMGANTLMLTLNLDAVAYMPCNPSVGGPAKGIVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I   ENL + QG V
Sbjct: 67  LGGEMAKNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEETENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++ ++ Q  +     +VV+TTGT+LRG + IG L   +G     PS +L  
Sbjct: 127 ERLIIENDKVTGVITQTGAEYYAKSVVITTGTYLRGKVIIGDLSYESGPNNQQPSVNLSY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFEMVRFKTGTPPRVNSQTIDYSKTEIQPGDEVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TNDETHSIINSNLDRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++QH  +R+IPGLE V ++RPGYAIEYD I P +L+P+LETKKI GLF
Sbjct: 307 VYVQGLSTSLPEDVQHHILRSIPGLEGVTMMRPGYAIEYDAIVPTQLWPSLETKKIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK+   + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAARKAQNKESVILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I   R  +F    ++    +  L S ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLIKSERFDQFLSKKEQIEREKDRLASTIVK 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               ++   T I      +       L  P+ +  ++  I P   K    V E+++I+  
Sbjct: 487 VTEETNQFLTEIGSSPLKEPMYGVGLLKRPEITYTHIAQIVPPLEKLDDDVAEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  ++K  E + +P+D DY ++  L+ E K+KLS ++P ++ QAS++ G+
Sbjct: 547 YEGYISKQLEQVDKLKKMENKKLPEDLDYHAINGLATEAKQKLSEVRPLSMAQASRVSGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
            PA +++LL+Y+++  ++ 
Sbjct: 607 NPADVSILLVYMEQGKLQK 625


>gi|330964187|gb|EGH64447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 630

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 385/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIIIGGGHAGTEAALASARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q    I   +VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPAQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T  
Sbjct: 247 TNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +IS                L+ P+    +L ++         LV E+++I++ 
Sbjct: 487 PGTEQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTGQGCT-DPLVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P+D DY+ +  LS E++ KL I +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQDEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK   
Sbjct: 606 TPAAISLLMIHLKKRGA 622


>gi|268593523|ref|ZP_06127744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rettgeri DSM 1131]
 gi|291310947|gb|EFE51400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rettgeri DSM 1131]
          Length = 629

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/620 (46%), Positives = 389/620 (62%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREID
Sbjct: 5   EQFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++  + +     +   VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENNRVTGAITRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + Q + C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQDQHPQQMPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIFLEPEGL +
Sbjct: 245 TYTNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRDLKQTLESKFIDG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+A+ +  L+     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLLAGLNAAQHAFGLEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   ++     R  LK + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWAHFNNKVELIEKERQRLKDIW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +  K+ + T    I      K     + L  P+ + + L S+   A         ++++I
Sbjct: 485 VHPKSDNHTEIDGILTVPLSKEANGEDLLRRPEMTYKMLTSLNLFAPGIDDPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQKEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGM 624


>gi|254186501|ref|ZP_04893018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934186|gb|EDO89856.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 657

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|53724003|ref|YP_104449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 23344]
 gi|121598310|ref|YP_994646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei SAVP1]
 gi|124385197|ref|YP_001027579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10229]
 gi|126449480|ref|YP_001082523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10247]
 gi|126451633|ref|YP_001068275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106a]
 gi|167001264|ref|ZP_02267063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei PRL-20]
 gi|167721836|ref|ZP_02405072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei DM98]
 gi|217423848|ref|ZP_03455348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 576]
 gi|238561559|ref|ZP_00441828.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei GB8 horse 4]
 gi|242316407|ref|ZP_04815423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106b]
 gi|254174970|ref|ZP_04881631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 10399]
 gi|254194591|ref|ZP_04901022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei S13]
 gi|254201525|ref|ZP_04907889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei FMH]
 gi|254206863|ref|ZP_04913214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei JHU]
 gi|254357415|ref|ZP_04973689.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei 2002721280]
 gi|81170532|sp|Q62FS8|MNMG_BURMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222914|sp|A3MQI7|MNMG_BURM7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222915|sp|A2S6L0|MNMG_BURM9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222916|sp|A1V8U3|MNMG_BURMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222917|sp|A3P104|MNMG_BURP0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52427426|gb|AAU48019.1| glucose-inhibited division protein A [Burkholderia mallei ATCC
           23344]
 gi|121227120|gb|ABM49638.1| glucose-inhibited division protein A [Burkholderia mallei SAVP1]
 gi|124293217|gb|ABN02486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10229]
 gi|126225275|gb|ABN88815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106a]
 gi|126242350|gb|ABO05443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei NCTC 10247]
 gi|147747419|gb|EDK54495.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei FMH]
 gi|147752405|gb|EDK59471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei JHU]
 gi|148026479|gb|EDK84564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei 2002721280]
 gi|160696015|gb|EDP85985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei ATCC 10399]
 gi|169651341|gb|EDS84034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei S13]
 gi|217392911|gb|EEC32933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 576]
 gi|238524328|gb|EEP87761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei GB8 horse 4]
 gi|242139646|gb|EES26048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1106b]
 gi|243062887|gb|EES45073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia mallei PRL-20]
          Length = 657

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|32034340|ref|ZP_00134540.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126209119|ref|YP_001054344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae L20]
 gi|166222902|sp|A3N2V3|MNMG_ACTP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126097911|gb|ABN74739.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 630

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CHITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|330447281|ref|ZP_08310931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491472|dbj|GAA05428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 629

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/622 (46%), Positives = 392/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQEKFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM +  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q
Sbjct: 63  VDALGGLMAKAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAVRNVLENQENLMIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +  + +V +     R  TVVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QAVTDLIVENDRAAGVVTEMGLKFRSKTVVLTVGTFLGGKIHIGLENYSGGRTGDPASIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +      RLKTGTP R+D +++ +   E Q  D     FSFM  +  + RQI C
Sbjct: 183 LADRLRELPLRVDRLKTGTPPRIDARSVDFSVLETQHGDNPTPTFSFMGKQSDHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 FITYTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q Q +R++ G E   I+RPGYAIEYD+ +P++L  T E K I
Sbjct: 303 TTNELYPNGISTSLPFDVQMQIVRSMKGFENATIVRPGYAIEYDFFDPRDLKQTFENKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+A ++   +     R ++Y+GV+IDDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLMAGMNAALQAQDKEGWSPRRDEAYMGVLIDDLSTIGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP G +LG + + R  RF + ++     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTPKGRELGLVDDERWARFNQKLENMELERQRLKD 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
           + +  K+        I      +  +  + L  P+ S + L +I   A         E++
Sbjct: 483 IWINPKSDHVDELNKILKAPITREASGEDLLRRPEVSYEQLTAIETFAPAHEDVEAREQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    EK  +P D DYS +  LSNE+  KL+  KP ++  AS
Sbjct: 543 EIQVKYQGYIDRQREEVEKSLRHEKTKLPFDLDYSQVKGLSNEVVAKLTDAKPESIGMAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|261346698|ref|ZP_05974342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rustigianii DSM 4541]
 gi|282565098|gb|EFB70633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Providencia rustigianii DSM 4541]
          Length = 629

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/620 (46%), Positives = 392/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREID
Sbjct: 5   EQFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++  V +     +  +VVLT GTFL G IHIG      GR GD P+ SL 
Sbjct: 125 VEDLIVENNRVTGAVTRMGLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + Q + C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQEQHPQQVPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIFLEPEGL +
Sbjct: 245 TYTNEQTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q + + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMKIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+A+ +  L+     R  +Y+GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAAQHAFDLEGWFPRRDQAYVGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     R  LK + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWEHFNRKVEMIEKERQRLKDIW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +  K+ +      I      K     + L  P+ + Q L S+   A         ++++I
Sbjct: 485 VHPKSDNHEEIDQILSVPLSKEANGEDLLRRPEMTYQMLTSLNLFAPGVEDPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGM 624


>gi|205831546|sp|A4GAI2|MNMG_HERAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193222447|emb|CAL63519.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Herminiimonas
           arsenicoxydans]
          Length = 645

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/631 (46%), Positives = 396/631 (62%), Gaps = 12/631 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G ST L+TH   T+G MSCNP+IGG+GKGHLVR
Sbjct: 2   IFPTKFDVIVVGGGHAGTEAALASARMGQSTLLLTHNIETLGQMSCNPSIGGIGKGHLVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IHIG     AGR GD P+ 
Sbjct: 122 QQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIHIGMNNYSAGRAGDPPAI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG++I +    +Q  D   IP FS M    +  +Q+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDPIPVFSVMGSVAMHPQQM 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDKIHRFAGKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q   ++++ GLE  +I+RPGYAIEYDY +P+ L  TLETK
Sbjct: 302 GLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAIEYDYFDPRGLKATLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG++AGIN+A +  + D     R ++Y+GV++DDL ++
Sbjct: 362 VIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTPRRDEAYLGVLVDDLITQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GVLEPYRMFTSRAEYR+SLR DNAD RLT +G +LGC+G+ +   F    +        L
Sbjct: 422 GVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQWALFETKREAVARELERL 481

Query: 479 KSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKF------ 528
           +S  ++ +      +  +  K   +     + L  P+ + + L S+   D +        
Sbjct: 482 RSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVTYETLMSLKGMDGQDLGGPGVA 541

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I+  YA Y  RQ  E +     E   +P +FDY ++  LS E+++KL+  +
Sbjct: 542 EPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYMAVKGLSIEVRQKLTKQR 601

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           P  L QAS+I G+TPAA++L+L+++KK   K
Sbjct: 602 PETLGQASRISGVTPAAISLMLVHLKKGGFK 632


>gi|330822706|ref|YP_004386009.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           K601]
 gi|329308078|gb|AEB82493.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           K601]
          Length = 677

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/642 (45%), Positives = 389/642 (60%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 20  LYPQEFDVIVVGGGHAGTEAALAAARMGCRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 79

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 80  EVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 139

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + ++  V Q     R   VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 140 QQAVDDLMVEGDRVAGAVTQIGLRFRARAVVLTAGTFLDGRIHVGLNNYAAGRAGDPPAV 199

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFM-TD 231
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM + 
Sbjct: 200 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFMGST 259

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 260 VMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 319

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 320 QIFLEPEGLTTHEFYPNGISTSLPFDIQYALVRSMRGLENAHILRPGYAIEYDYFDPRSL 379

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 380 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEAPWLPRRDEAYLGVL 439

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   FA      
Sbjct: 440 VDDLVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFAAKRDAV 499

Query: 472 NFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
           +     LKS  +  + L++     +  K        ++ L  PD     L S+       
Sbjct: 500 SRETERLKSTWVNPRILAAAEAERVLGKAIDHEYNLFDLLRRPDVDYARLMSLDGGKYAS 559

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                      S  VIE+++I + YA Y  RQ  E +     E+  +P + DY  + ALS
Sbjct: 560 GDVSRETLGALSEPVIEQVEIAAKYAGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALS 619

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 620 IEVRQKLQKHRPETLGQASRISGVTPAAISLLLVHLKKGGFK 661


>gi|53721015|ref|YP_110001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei K96243]
 gi|81170533|sp|Q63PG8|MNMG_BURPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52211429|emb|CAH37420.1| glucose inhibited division protein A [Burkholderia pseudomallei
           K96243]
          Length = 657

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++G+ E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGISE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|238787871|ref|ZP_04631668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia frederiksenii ATCC 33641]
 gi|238724214|gb|EEQ15857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia frederiksenii ATCC 33641]
          Length = 629

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/619 (47%), Positives = 396/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDHVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R + F+K I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDVRWEHFSKKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPTDLDYSQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|171315838|ref|ZP_02905069.1| glucose inhibited division protein A [Burkholderia ambifaria MEX-5]
 gi|171099027|gb|EDT43812.1| glucose inhibited division protein A [Burkholderia ambifaria MEX-5]
          Length = 656

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/633 (45%), Positives = 385/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQSNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG++I + K ++Q  D   IP FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDPRALKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AG+N+ R   + D  C  R  +Y+GV++DDL ++
Sbjct: 362 AINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDA 525
           KS  +T K L    +T++  K      +  E L  P      +               D 
Sbjct: 482 KSTWVTPKTLPPEEATALLGKAIDHEYSLAELLRRPGIGYDGVCGLKGGECAPAEPLADD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +     E   +P   DY  +  LS E+ +KL+
Sbjct: 542 PVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRGLSFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  + QAS+I G+TPAA++LL++++K+  +
Sbjct: 602 EFRPETIGQASRISGVTPAAISLLMVHLKRRGL 634


>gi|254184036|ref|ZP_04890627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1655]
 gi|184214568|gb|EDU11611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1655]
          Length = 657

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|134281604|ref|ZP_01768312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 305]
 gi|167904864|ref|ZP_02492069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei NCTC 13177]
 gi|167913142|ref|ZP_02500233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 112]
 gi|134247271|gb|EBA47357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 305]
          Length = 657

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|170694309|ref|ZP_02885463.1| glucose inhibited division protein A [Burkholderia graminis C4D1M]
 gi|170140732|gb|EDT08906.1| glucose inhibited division protein A [Burkholderia graminis C4D1M]
          Length = 652

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/631 (45%), Positives = 388/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQINGTTGYEEAAAQGL+AGIN+       D  C  R  +Y+GV++DDL ++
Sbjct: 362 VISGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQGKDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + E R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDEVRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDA 525
           ++  +  K L    +T++  K      +  + L  P  S   + ++            + 
Sbjct: 482 RTTWVNPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPGTLAED 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
               + + E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+
Sbjct: 542 EVLLAQIKEQIEIGIKYQGYIDRQADEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|332163559|ref|YP_004300136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318608066|emb|CBY29564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325667789|gb|ADZ44433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861789|emb|CBX71962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia enterocolitica W22703]
          Length = 629

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 393/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + +   I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVAEINAVLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYITRQQEEIEKQLRNENTLLPADLDYHQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|123444382|ref|YP_001008347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|166224338|sp|A1JTD9|MNMG_YERE8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122091343|emb|CAL14229.1| glucose inhibited division protein A [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 629

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 393/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + +   I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVAEINAVLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|254360965|ref|ZP_04977111.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           PHL213]
 gi|153092444|gb|EDN73507.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           PHL213]
          Length = 630

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/623 (48%), Positives = 390/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N+ YDVIV+GGGHAG EAA   A++G  T ++TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRVLYRNAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +   VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  DE L  FSFM D   + RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVFSFMGDVSQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LNTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLLAGINAALQVQGKEAWYPTRDQAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTP   +LG I E R  RF + ++     R+ LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPKAHELGLIDEARWVRFNQKMEAIEQERARLK 481

Query: 480 SLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S              ++      +  +  + +  P+ S + L  I   A       V E+
Sbjct: 482 STWAHLQMPNLDELNALLANPLAREASGEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEIAIKYQGYIEHQYNEIERHKRHENTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|260771038|ref|ZP_05879966.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio furnissii CIP 102972]
 gi|260613927|gb|EEX39118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio furnissii CIP 102972]
 gi|315178650|gb|ADT85564.1| glucose inhibited division protein A [Vibrio furnissii NCTC 11218]
          Length = 631

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/630 (45%), Positives = 388/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM    D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAEAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHTLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + +  +V Q     R   VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAADDLIVENDQVRGVVTQMGLKFRAKAVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAQRLRELPFRVDRLKTGTPPRIDANSVDFSILEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTFETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IQGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQDKEGWSPRRDQAYVGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLINDARWARFNQKIEHMETERQRLK 481

Query: 480 SLVLTSKN--LSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   +  + + +   K    +  +  + L  P+ +   L S+   A         E+
Sbjct: 482 ETWMNPNSDGVDALNALLKTPMSREASGEDLLRRPEMTYDLLTSLSAFAPALEDREAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY ++  LSNE+  KL+  KP ++  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKAVKGLSNEVVMKLNNAKPESIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNT-VKLNEIV 624
           S+I G+TPAA+++LL+++KK+  +K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGLLKKGEAA 631


>gi|240950029|ref|ZP_04754337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus minor NM305]
 gi|240295507|gb|EER46250.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus minor NM305]
          Length = 630

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N++YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNKTYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  DE L   SFM   +   RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVMSFMGSVEQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LTTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+  +    D    +R  +Y GV++DDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWARFNEKMENIEKEKARLK 481

Query: 480 SLVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
                 +  +   ++   +    +  +  + +  P+ + + L  I P A         E+
Sbjct: 482 QTWAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|165977091|ref|YP_001652684.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|205831485|sp|B0BRY1|MNMG_ACTPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|165877192|gb|ABY70240.1| glucose inhibited division protein A [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 630

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPSAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGAVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGVIEGSGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|303252046|ref|ZP_07338216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248704|ref|ZP_07530717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649110|gb|EFL79296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854631|gb|EFM86821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 630

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/623 (47%), Positives = 389/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     + +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAITKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY ++ +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDNVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|293393679|ref|ZP_06637988.1| glucose-inhibited division protein A [Serratia odorifera DSM 4582]
 gi|291423801|gb|EFE97021.1| glucose-inhibited division protein A [Serratia odorifera DSM 4582]
          Length = 629

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 390/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRSALENQPNLTLFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
              +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSVLAEQHGDTPMPVFSFMGNASQHPQQVPCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EVYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +   +     R  +Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYAVDDEGWSPRRDQAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  R+++ ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWARYSEKLELIERERQRLRDVWV 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
              +       S+      +     E L  P+     L ++   A   +     E+++I+
Sbjct: 486 HPHSDNVAQVNSLLKAPLSREANGEELLRRPEMDYAQLTAVDAFAPPLTDTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E  + +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQDEIDKQQRNENTVLPLDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|307257737|ref|ZP_07539494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306863643|gb|EFM95569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 630

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/623 (47%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRIDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|76809663|ref|YP_331606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710b]
 gi|167818023|ref|ZP_02449703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 91]
 gi|167896462|ref|ZP_02483864.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 7894]
 gi|167921079|ref|ZP_02508170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei BCC215]
 gi|254259137|ref|ZP_04950191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710a]
 gi|123600829|sp|Q3JXU7|MNMG_BURP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76579116|gb|ABA48591.1| glucose-inhibited division protein A [Burkholderia pseudomallei
           1710b]
 gi|254217826|gb|EET07210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 1710a]
          Length = 657

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEVGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|307246580|ref|ZP_07528651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306852452|gb|EFM84686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 630

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/623 (47%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD  
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDTF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++     R  LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIERERERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|307262144|ref|ZP_07543795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868121|gb|EFM99946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 630

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/623 (47%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|52082647|ref|YP_081438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus licheniformis ATCC 14580]
 gi|52788046|ref|YP_093875.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus licheniformis ATCC 14580]
 gi|319648513|ref|ZP_08002729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus sp. BT1B_CT2]
 gi|81170519|sp|Q65CN2|MNMG_BACLD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52005858|gb|AAU25800.1| glucose-inhibited division protein [Bacillus licheniformis ATCC
           14580]
 gi|52350548|gb|AAU43182.1| GidA [Bacillus licheniformis ATCC 14580]
 gi|317389592|gb|EFV70403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus sp. BT1B_CT2]
          Length = 628

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/617 (43%), Positives = 387/617 (62%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVVVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V
Sbjct: 67  LGGEMAKNIDKTHIQMRLLNTGKGPAVRALRAQADKFQYQHEMKKTLENEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +  R  TVVLTTGTFLRG I +G L   +G     PS  L  
Sbjct: 127 ERLLIEDGECRGVITQTGAEYRSKTVVLTTGTFLRGKIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  DE    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDEVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPETHEIIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI GLF
Sbjct: 307 VYVQGLSTSLPEDVQRKMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKIPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R ++F +        +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGYQIGLISEERYQKFQEKKAAIEAEKKRLHSVIIK 486

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+   +      A + +  P+ + + + ++ P  +K +  V E+++I+  
Sbjct: 487 PTKENQEYIRSLGGSELKDGIRATDLMKRPEMNYETVTALAPPEQKVAGDVAEQVEIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I G+
Sbjct: 547 YEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
            PA +++LL+Y+++  +
Sbjct: 607 NPADISILLVYLEQGRI 623


>gi|167740808|ref|ZP_02413582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei 14]
          Length = 657

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 390/629 (62%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LE+K I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLESKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|319760786|ref|YP_004124723.1| glucose inhibited division protein a [Alicycliphilus denitrificans
           BC]
 gi|317115347|gb|ADU97835.1| glucose inhibited division protein A [Alicycliphilus denitrificans
           BC]
          Length = 659

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/642 (45%), Positives = 389/642 (60%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGCRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + ++  V Q     R   VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVAGAVTQIGLRFRARAVVLTAGTFLDGRIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFM-TD 231
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM + 
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFMGST 241

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 242 VMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDIQYALVRSMRGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 362 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEAPWLPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   FA      
Sbjct: 422 VDDLVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFAAKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
           +     LKS  +  + L++     +  K        ++ L  PD     L S+       
Sbjct: 482 SRETERLKSTWVNPRILAAAEAERVLGKAIDHEYNLFDLLRRPDVDYARLMSLDGGKYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                      S  VIE+++I + YA Y  RQ  E +     E+  +P + DY  + ALS
Sbjct: 542 GDVSRETLGALSEPVIEQVEIAAKYAGYIDRQKDEVQRAAHYEQLRLPPELDYMQVSALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 602 IEVRQKLQKHRPETLGQASRISGVTPAAISLLLVHLKKGGFK 643


>gi|194016647|ref|ZP_03055261.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus ATCC 7061]
 gi|194012120|gb|EDW21688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus ATCC 7061]
          Length = 628

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKKTMENEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +    +V Q  +  R  +VVLTTGTFL+G I +G L   +G     PS  L +
Sbjct: 127 DHLIVEDDECKGVVTQTGANYRAKSVVLTTGTFLKGRIILGDLSYSSGPNNQQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLAELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+LETH+II EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSLETHQIIDENLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKISGL+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKISGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-----K 479
           R+ TSRAEYR+ LR DNAD RLT +G  +G I + R + + +  +     +  L     K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYHIGLISQERFQAYQQKKEAIEAEKKRLYSVIIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + S   S  +DG    A + +  P+ + +++ ++ P   +  S V E+++I+
Sbjct: 487 PTAETQEFIRSLGGSELKDGIR--ASDLMKRPEMNYESVVTLAPAETQLPSDVCEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E K+KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEAKQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|254491056|ref|ZP_05104237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylophaga thiooxidans DMS010]
 gi|224463569|gb|EEF79837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylophaga thiooxydans DMS010]
          Length = 627

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/621 (46%), Positives = 390/621 (62%), Gaps = 4/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDVIV+GGGHAG EAA  +A+ G  T L+T    T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQDHYDVIVVGGGHAGTEAALASARQGVKTLLLTQNIETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M + AD  GIQFR LN  KGPAVR  R QADR  Y+ A++  + +Q NL + Q
Sbjct: 63  IDALGGIMAQAADRGGIQFRTLNSSKGPAVRATRAQADRVRYKAAVRAYLENQPNLYIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q        +VVLT GTFL G+IHIG      GR GD  S +
Sbjct: 123 QAVDDLVVENDRVVGVVTQVGLRFSAKSVVLTVGTFLGGLIHIGMQNHQGGRAGDPASIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L        F   RLKTGTP R+   +I +    +Q  D     FSF+  +  + RQI C
Sbjct: 183 LSQRLRSLPFRVDRLKTGTPPRIATSSIDFSVLTEQPGDNPTPVFSFLGKQADHPRQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH +I  N+  S +YSG+I+  GPRYCPSIEDK+VRF +R  HQIFLEPEGL
Sbjct: 243 YITHTNEHTHEVIRNNLDRSPMYSGEIEGIGPRYCPSIEDKVVRFADRTAHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VYPNGIST+LP ++Q++ +R++ GLE  +I RPGYAIEYD+ +P++L PTLETK +
Sbjct: 303 EPGEVYPNGISTSLPFDVQYEIVRSMKGLENAHITRPGYAIEYDFFDPRDLQPTLETKHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+  ++  LD     R ++YIGV+IDDL + G 
Sbjct: 363 GGLFFAGQINGTTGYEEAGAQGLIAGLNAGLQARGLDGWYPRRDEAYIGVLIDDLITSGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G +LG + + R   F+          + L+S
Sbjct: 423 REPYRMFTSRAEYRLMLREDNADIRLTPVGRQLGIVDDERWAIFSAKQDAVAKENARLES 482

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
                + +   ++ ++  ++  K  +A E L  P      L  +    +  +  V E++ 
Sbjct: 483 FKFVPEKIDQTTAEAVLGEKLNKVTSAIELLRRPKVDYAMLLELMGTEQAVADDVAEQVV 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y+ Y  RQ  E   ++  E   +P + DY ++  LSNE++EKL   +P NL QA++
Sbjct: 543 IQTKYSGYINRQQNEIDRLQRNENMSLPTNMDYKNVRGLSNEVREKLEQARPVNLGQAAR 602

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLL+++K++ +
Sbjct: 603 ISGVTPAAVSLLLVHLKRSGL 623


>gi|223041389|ref|ZP_03611593.1| glucose-inhibited division protein A [Actinobacillus minor 202]
 gi|223017779|gb|EEF16185.1| glucose-inhibited division protein A [Actinobacillus minor 202]
          Length = 630

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/623 (46%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N++YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNKTYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D+ L   SFM   +   RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDDVLPVMSFMGSVEQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LTTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+  +    +    +R  +Y GV++DDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWTRFNEKMENIEKEKARLK 481

Query: 480 SLVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
                 +  +   ++   +    +  +  + +  P+ + + L  I P A         E+
Sbjct: 482 QTWAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|260774535|ref|ZP_05883448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio metschnikovii CIP 69.14]
 gi|260610441|gb|EEX35647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio metschnikovii CIP 69.14]
          Length = 631

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/630 (45%), Positives = 393/630 (62%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRHALENMPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E++ +  +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAADDLIVEQDHVRGVVTQMGLKFHAKSVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D +++ + + E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDARSVDFSQLEAQHGDNPTPVFSFMGKREQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFSDKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMQGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 INGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + E+R  RF + ++     R  LK
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKAYQLGLVCEQRWARFNQKVEHMQQERQRLK 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   +  + +++        +     + L  P+ + Q + SI   +     S   E+
Sbjct: 482 ETWINPTSTDAEALNALLKTPISREANGEDLLRRPEMTYQQVTSIATFSPAIEDSEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP  L  A
Sbjct: 542 VEIQVKYEGYIQRQRDEIEKSLRHEHTKLPADLDYQQVKGLSNEVVLKLNAAKPETLGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNT-VKLNEIV 624
           S+I G+TPAA+++LL+++KK   +K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKQGLLKKGEAA 631


>gi|83649685|ref|YP_438120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hahella chejuensis KCTC 2396]
 gi|123529920|sp|Q2S6M9|MNMG_HAHCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83637728|gb|ABC33695.1| glucose-inhibited division protein A [Hahella chejuensis KCTC 2396]
          Length = 629

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 397/619 (64%), Gaps = 4/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             +S+DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   FPKSFDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  VDALGGAMALATDRAGIQFRVLNSRKGPAVRATRAQADRALYKAAIREILENQPNLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + ++ +V Q        TVVLTTGTFL GVIHIG      GR GD PS +
Sbjct: 123 QAADDLIMQGDHVAGVVTQMGLRFHSKTVVLTTGTFLGGVIHIGLENHSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L     +  F  GRLKTGTP R+D +++ +   E Q  D  +   SFM     +   + C
Sbjct: 183 LAKRLREMPFRVGRLKTGTPPRIDARSVDFSVMEAQPGDTPIPVMSFMGSVDLHPHQVNC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRTN  TH II   +  S +Y+G I+  GPRYCPSIEDK+ RF +++ HQ+F+EPEGL
Sbjct: 243 FITRTNERTHEIIRGGMDRSPMYTGVIEGVGPRYCPSIEDKVNRFSDKDSHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +YPNGIST+LP ++Q Q + +I G+E  +I RPGYAIEYD+ NP++L  +LETK +
Sbjct: 303 STHELYPNGISTSLPFDVQLQLVHSIQGMENAHITRPGYAIEYDFFNPQDLKHSLETKFV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+A ++ + +     R ++YIGV++DDL + G 
Sbjct: 363 GSLFFAGQINGTTGYEEAAAQGLLAGMNAALRAQEKEAWSPRRDEAYIGVLVDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG I + R + F +  +     +  LKS
Sbjct: 423 REPYRMFTSRAEYRLLLREDNADLRLTEKGRELGMIDDERWRVFCEKREAIAREQQRLKS 482

Query: 481 LVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     K   +  +   +  +  + ++ L  P+ + + L  +  D       V E+L+
Sbjct: 483 IWIQPATEKARKAAELLETELTREYSLHDLLKRPEMTWEKLSLLDADVAATPYEVAEQLE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E + ++  E   +P D DYS +  LSNE+K+KL+ ++P  L QAS+
Sbjct: 543 IQVKYAGYIDRQQEEIERLRRNENMALPADLDYSGIQGLSNEIKQKLTEVRPETLAQASR 602

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+++KK 
Sbjct: 603 IPGVTPAAVSLLLVHLKKR 621


>gi|109900604|ref|YP_663859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas atlantica T6c]
 gi|123063991|sp|Q15MT3|MNMG_PSEA6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109702885|gb|ABG42805.1| glucose inhibited division protein A [Pseudoalteromonas atlantica
           T6c]
          Length = 633

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQQQFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNVETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D  GIQFR LN  KGPAVR  R QADR LYR A++  +  Q+NL + Q
Sbjct: 63  IDALGGSMAKAIDKGGIQFRTLNSSKGPAVRATRAQADRSLYRSAIRDIVEHQDNLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + ++ +V Q     R  +VV+T GTFL G IHIG      GR GD PS +
Sbjct: 123 QSCDDLIVENDQVTGVVTQMGLKFRAKSVVITVGTFLGGTIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +      F   RLKTGTPARLD +T+ +   ++Q  D     FSFM  +  + RQI C
Sbjct: 183 LADRLRALPFRVSRLKTGTPARLDARTLDYSVMQEQLGDSPTPVFSFMGKREDHPRQIAC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 YITHTNSKTHDIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  VYPNGIST+LP ++Q + +R+I G E  +IIRPGYAIEYD+ +P++L  TLETK I
Sbjct: 303 NSIEVYPNGISTSLPFDVQFELVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQTLETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N++ +    D +   R ++Y+GV+IDDL + G 
Sbjct: 363 KGLFFAGQINGTTGYEEAGAQGLIAGANASLQCQGKDPLILRRDEAYMGVLIDDLATMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + E R + F   ++     R  L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGHELGLVDEERWQAFNIKLEAIELERQRLRD 482

Query: 481 LVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +  K+ ++ +++        K  T  + +  P+ + + L ++             E++
Sbjct: 483 TWVHPKHAAAEALNPLLKNALSKENTLEDLIRRPEMTYETLMNVTEFGPGITDPKAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E  + +  E  LIP DFDYS +  LSNE+  KLS  KP  L  AS
Sbjct: 543 EIQIKYAGYIERQQDEIAKSRKNENTLIPLDFDYSQISGLSNEVVAKLSDAKPETLGLAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|238765116|ref|ZP_04626050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia kristensenii ATCC 33638]
 gi|238696668|gb|EEP89451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia kristensenii ATCC 33638]
          Length = 629

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/619 (47%), Positives = 393/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNADQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDDDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + +   I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVAEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYQGYIARQQEEIEKQLRNENTLLPADLDYRQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|212712654|ref|ZP_03320782.1| hypothetical protein PROVALCAL_03749 [Providencia alcalifaciens DSM
           30120]
 gi|212684870|gb|EEB44398.1| hypothetical protein PROVALCAL_03749 [Providencia alcalifaciens DSM
           30120]
          Length = 629

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/620 (46%), Positives = 391/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLVREID
Sbjct: 5   EQFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMATATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++  V +     +   VVLT GTFL G IHIG      GR GD P+ +L 
Sbjct: 125 VEDLIVENNRVTGAVTRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAITLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + Q + C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQEQHPQQVPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIFLEPEGL +
Sbjct: 245 TYTNEQTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+A+ +  LD     R  +Y+GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAAQHAFGLDGWFPRRDQAYVGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     R  LK + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWEHFNRKVELIEKERQRLKDIW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +  K+ +      I      K     + L  P+ + Q L S+   A         ++++I
Sbjct: 485 VHPKSDNHEEIDQILTVPLSKEANGEDLLRRPEMTYQMLTSLNLFAPGVEDPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGM 624


>gi|307731470|ref|YP_003908694.1| glucose inhibited division protein A [Burkholderia sp. CCGE1003]
 gi|307586005|gb|ADN59403.1| glucose inhibited division protein A [Burkholderia sp. CCGE1003]
          Length = 652

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/631 (45%), Positives = 387/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AGIN+       D  C  R  +Y+GV++DDL ++
Sbjct: 362 VINGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQGRDAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDA 525
           ++  +  K L    +T++  K      +  E L  P  S   + ++            + 
Sbjct: 482 RTTWVNPKTLSADEATALLGKPIDHEYSLAELLRRPGVSYDGVCALREGTCAAPGPLAED 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
               + + E+++I   Y  Y  RQ  E +  +  E   +P   DY+ +  LS E ++KL+
Sbjct: 542 EVLLAQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPDGLDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|307547045|ref|YP_003899524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halomonas elongata DSM 2581]
 gi|307219069|emb|CBV44339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halomonas elongata DSM 2581]
          Length = 631

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 393/617 (63%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A+ G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALASARTGCRTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D  GIQFRVLN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q    
Sbjct: 67  GGAMGLATDMGGIQFRVLNARKGPAVRATRAQADRVRYKAAIRGMLENQANLTIFQQAAG 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +  +        TVVL TGTFL GVIHIG      GR GD PSN+L   
Sbjct: 127 DLIVEGDQVRGVCTETGIRFMSETVVLCTGTFLGGVIHIGLDNSRGGRAGDPPSNALAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP RLD K++ + K ++Q  DE     S++ ++  + RQ+ C I  
Sbjct: 187 LRALPFRVDRLKTGTPPRLDAKSVDFSKLDEQPGDEPTPVMSYLGERSQHPRQVSCHIAH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N++ S ++SG I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL+T  
Sbjct: 247 TNERTHEIIHANLERSPMFSGVIEGVGPRYCPSIEDKVHRFADKSSHQIFVEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I GLE  +I RPGYAIEYD+ +P++L  +LETK I  L+
Sbjct: 307 LYPNGISTSLPFDVQLQVVRSIQGLENAHITRPGYAIEYDFFDPRDLKHSLETKFIHNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+AR++  LD     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAARRARGLDAWWPRRDEAYLGVLVDDLITLGTREPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + ERR   F+   +      S L+S  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADMRLTETGRELGLVDERRWTAFSAKREAVERETSRLRSSWVQ 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++  IS    +   +     + L  P+   +++  +  +    +  V E++QI++ 
Sbjct: 487 PGSEAARRISETTGQSLKREYNLLDLLKRPEIGYRDVAGLVGEPVD-NDQVAEQVQIQAK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E  ++K  E   +P D DY  +  LSNE+++KL   +P  L QAS+I G+
Sbjct: 546 YQGYIDRQQDEIDKLKRHEATPLPDDLDYDQVDGLSNEIRQKLVEARPETLAQASRISGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA+++LLI++KK  +
Sbjct: 606 TPAAVSILLIHLKKRRL 622


>gi|186477785|ref|YP_001859255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia phymatum STM815]
 gi|238691317|sp|B2JJL1|MNMG_BURP8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|184194244|gb|ACC72209.1| glucose inhibited division protein A [Burkholderia phymatum STM815]
          Length = 652

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/627 (45%), Positives = 388/627 (61%), Gaps = 15/627 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRHRLENQPNLWLFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+   +   RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRVEQHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNAQTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK ISG
Sbjct: 306 NEFYPNGISTSLPFDVQLELVRSMVGLEHAHILRPGYAIEYDYFDPRGLKASLETKAISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+          C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLYVQSKGPWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDAR-----KFS 529
           +  K L    +T++  K      +  + L  P  S   +  +      PD          
Sbjct: 486 VNPKTLSSEEATALLGKPIDHEYSLADLLRRPGVSYDGICGLREGTCGPDEALAHDDVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +  +  E   +P++ DY+ +  LS E ++KL+  +P
Sbjct: 546 AQIKEQIEIGVKYQGYIERQAGEIERNEAHENTRLPENLDYTEVRGLSFEARQKLTQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN 616
             + QAS+I G+TPAA++LL++++K+ 
Sbjct: 606 ETIGQASRISGITPAAISLLMVHLKRG 632


>gi|238750333|ref|ZP_04611835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia rohdei ATCC 43380]
 gi|238711566|gb|EEQ03782.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia rohdei ATCC 43380]
          Length = 629

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/619 (47%), Positives = 394/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDKAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDKVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP RLD +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRLDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSQKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVSEINGLLKAPLSKEANGEELLRRPEIDYRLLTALPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTALPADLDYRQVSGLSNEVIAKLNDHKPSSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|332308610|ref|YP_004436461.1| glucose inhibited division protein A [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175939|gb|AEE25193.1| glucose inhibited division protein A [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 633

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + +DVIV+GGGHAG EAA  AA++G++T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQQQFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR A++  +  Q+NL + Q
Sbjct: 63  IDALGGSMATAIDKAGIQFRTLNSSKGPAVRATRAQADRSLYRSAIRDIVEHQDNLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + ++ +V Q        +VV+T GTFL G IHIG      GR GD PS +
Sbjct: 123 QSCDDLIVENDQVTGVVTQMGLKFHARSVVITVGTFLGGTIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +      F   RLKTGTPARLD +T+ +   ++Q  D     FSFM  +  + RQI C
Sbjct: 183 LADRLRALPFRVSRLKTGTPARLDARTLDYSVMQEQLGDSPTPVFSFMGKREDHPRQIAC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 YITHTNSKTHDIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  VYPNGIST+LP ++Q + +R+I G E  +IIRPGYAIEYD+ +P++L  TLETK I
Sbjct: 303 NSIEVYPNGISTSLPFDVQFELVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQTLETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGLVAG N++ +    D +   R ++Y+GV+IDDL + G 
Sbjct: 363 KGLFFAGQINGTTGYEEAGAQGLVAGANASLQCQGKDPLILRRDEAYMGVLIDDLATMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + E R + F + ++     R  L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTTKGHELGLVDEERWQAFNRKLEAIELERQRLRD 482

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +  K+ ++     +      K  T  + +  P+ + + L  +             E++
Sbjct: 483 TWVHPKHAAADVLNPLLKNALSKENTLEDLIRRPEMTYETLMKVTDFGPGIADPKAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E  + +  E  LIP DFDYS +  LSNE+  KL+  KP  L  AS
Sbjct: 543 EIQIKYAGYIERQQEEIAKSRKNENTLIPVDFDYSQISGLSNEVVAKLTDAKPETLGLAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|238797882|ref|ZP_04641374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia mollaretii ATCC 43969]
 gi|238718298|gb|EEQ10122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia mollaretii ATCC 43969]
          Length = 629

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 395/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP RLD +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRLDARTIDFSQLVPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHFSKKIEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPVDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|83719253|ref|YP_443812.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Burkholderia thailandensis E264]
 gi|167620986|ref|ZP_02389617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis Bt4]
 gi|123536041|sp|Q2STD7|MNMG_BURTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83653078|gb|ABC37141.1| glucose-inhibited division protein A [Burkholderia thailandensis
           E264]
          Length = 657

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/629 (45%), Positives = 389/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRYLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-QIECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   +P FSF+     +  Q+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPVPVFSFLGRPEQHPEQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRHALEKEAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T +  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATELLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDALLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKKRGL 634


>gi|167838437|ref|ZP_02465296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis MSMB43]
          Length = 657

 Score =  804 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 388/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIHG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGEYGPSEPLAEDGLLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|258622945|ref|ZP_05717960.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Vibrio mimicus VM573]
 gi|258584728|gb|EEW09462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Vibrio mimicus VM573]
          Length = 631

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/630 (45%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++         S   E+
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGEDLLRRPEMTYELLTTLPAFTPALEDSEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKQVKGLSNEVVLKLSTTKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|237814358|ref|YP_002898809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei MSHR346]
 gi|237505862|gb|ACQ98180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia pseudomallei MSHR346]
          Length = 657

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 389/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGI 242
              + +   GRLKTGTP R+DG+TI + K ++Q  D   IP FSF+     + Q + C +
Sbjct: 186 RLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +L  + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELSVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I GMTPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGMTPAAISLLMVHLKKRGL 634


>gi|167582846|ref|ZP_02375720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia thailandensis TXDOH]
          Length = 657

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/629 (45%), Positives = 388/629 (61%), Gaps = 15/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAV   R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAAATDEGGIQFRILNSSKGPAVHATRAQADRVLYKQAIRRYLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-QIECGI 242
              +     GRLKTGTP R+DG+TI + K E+Q  D   IP FSF+     +  Q+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFLGRPEQHPEQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAING 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + +  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRHALEKEAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERLRTTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +T K L    +T +  K      +  E L  P  S   +  +            +     
Sbjct: 486 VTPKTLPADEATELLGKPIDHEYSLAELLRRPGISYDGVCGLRGGECGPSEPLAEDALLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E+ +KL+  +P
Sbjct: 546 AQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             + QAS+I G+TPAA++LL++++KK  +
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKKRGL 634


>gi|329900649|ref|ZP_08272541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549425|gb|EGF33989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 644

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/627 (46%), Positives = 393/627 (62%), Gaps = 12/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  +A++G  T L++H   T+G MSCNP+IGG+GKGHLVRE
Sbjct: 3   FPSEFDVIVVGGGHAGTEAALASARMGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  VDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRTRLENQPNLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ +
Sbjct: 123 QAVDDLIVEGDRVVGAVTQIGIQFRSRAVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIE 239
           L     +     GRLKTGTP RLDG+TI +   ++Q  D   IP FS M    +  +Q+ 
Sbjct: 183 LSARLKELKMPQGRLKTGTPPRLDGRTIDFSVMQEQPGDLDPIPVFSVMGSVSMHPKQLP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH II   +  S +Y+G I   GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 243 CWITHTNESTHDIIRGGLDRSPMYTGVIAGIGPRYCPSIEDKIHRFADKSSHQIFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+  YPNGIST+LP ++Q   +R++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 303 LTTNEYYPNGISTSLPFDVQLALVRSMVGLEQAHILRPGYAIEYDYFDPRGLKASLETKS 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG++AG+N+A ++   D     R  +Y+GV++DDL ++G
Sbjct: 363 IQGLFFAGQINGTTGYEEAAAQGMLAGLNAALQTQGRDAWTPGRDQAYLGVLVDDLVTQG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ +   F +  +        L+
Sbjct: 423 VQEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGCVGDLQWAAFEQKREAVARELERLR 482

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDARKFS 529
           S  ++ +      S  +  K   +  +  + L  P+ S   L  +               
Sbjct: 483 STWVSPRVLAEAESERVLGKAIEREYSLADLLRRPNVSYAGLLGLTGMEGQSLAGPGVVD 542

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
            +V E+++I+  YA Y  RQ  E +  +  E   +P +FDY ++ ALS E+++KL   +P
Sbjct: 543 LIVREQVEIQLKYAGYIDRQAREIERHEQFEHLKLPVEFDYLAVSALSMEVRQKLHAHRP 602

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN 616
             L QAS+I G+TPAA++LLL+++KK 
Sbjct: 603 ETLGQASRISGVTPAAMSLLLVHLKKG 629


>gi|261867021|ref|YP_003254943.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412353|gb|ACX81724.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 629

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/622 (47%), Positives = 390/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G +SCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQISCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R Q DR LYR A++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADKAGIQFRTLNSSKGPAVRATRAQTDRVLYRQAVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++  + +V +         V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRATGVVTKMGLKFHAKAVILTAGTFLAGKIHIGLENYTGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L       +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LAQRLRDLNLRVDRLKTGTPPRIDARTINFDVLAKQHGDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +YPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEIYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +YIGV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKDAWFPRRDQAYIGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWARFNQKMENIELERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +     + L  P+ + + L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREANGEDLLRRPEMNYEILTSLTPYQPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP  FDY+ +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQEEEIEKQKRHENTAIPAQFDYAKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|77461958|ref|YP_351465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas fluorescens Pf0-1]
 gi|123602667|sp|Q3K430|MNMG_PSEPF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77385961|gb|ABA77474.1| glucose inhibited division protein A [Pseudomonas fluorescens
           Pf0-1]
          Length = 632

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/623 (46%), Positives = 386/623 (61%), Gaps = 7/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+E
Sbjct: 3   FPSRFEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  IDALGGAMAMATDLGGIQFRVLNSRKGPAVRATRAQADRILYKAAVREILENQPNLWIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E+  +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +
Sbjct: 123 QAADDLIVEQEQVRGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNFSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +     GRLKTGTP R+DGK++ +    +Q  D  +   SFM +K  + RQ+ C
Sbjct: 183 LAHRLRELPLRVGRLKTGTPPRIDGKSVDFSVMTEQPGDTPIPVMSFMGNKEQHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            IT TN  TH II  N+  S +YS   +I+  GPRYCPSIEDKI RF ++  HQ+F+EPE
Sbjct: 243 WITHTNARTHEIIAANLDRSPMYSAAGEIEGIGPRYCPSIEDKIHRFADKESHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T  +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK
Sbjct: 303 GLTTHELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + 
Sbjct: 363 VIGGLFFAGQINGTTGYEEAGAQGLLAGANAALRAKGKEAWCPRRDEAYIGVLVDDLITL 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        L
Sbjct: 423 GTQEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESIELEEQRL 482

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           KS  +        +I+ K              LS P+     L  +          V E+
Sbjct: 483 KSTWVRPGTQQGDAIAEKFGTPLTHEYNLLNLLSRPEIDYAGLVEVT-GLGAEDPQVAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  RQ  E   ++  E   +P D DY+++  LS E++ KL   +P  L QA
Sbjct: 542 VEIKTKYAGYIDRQQDEIARLRASEDTKLPVDIDYTNISGLSKEIQSKLGATRPETLGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LL+I++KK   
Sbjct: 602 SRIPGVTPAAISLLMIHLKKRGA 624


>gi|147679251|ref|YP_001213466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pelotomaculum thermopropionicum SI]
 gi|205375704|sp|A5CY45|MNMG_PELTS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146275348|dbj|BAF61097.1| NAD/FAD-utilizing enzyme apparently [Pelotomaculum
           thermopropionicum SI]
          Length = 631

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 383/619 (61%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEA   AA++G  T ++T     +  M CNPA+GG  KGHLVRE+DA
Sbjct: 8   TYDVVVVGAGHAGCEAGLAAARMGCRTLVLTLNMDNVALMPCNPAVGGPAKGHLVREVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G   D A IQ R+LN  KGPAV   R QAD+  Y+L M++ +  Q  LD+ Q  V
Sbjct: 68  LGGEIGLNTDRASIQMRLLNTGKGPAVHALRAQADKRYYQLCMKKVLECQPGLDLKQALV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK  +  ++    +      VVLTTGT+L+G I IG L  P G  G  PS +L +
Sbjct: 128 EKIMVEKGKVRGVLTSTGARFEAGAVVLTTGTYLKGRIIIGDLSFPGGPNGQFPSVTLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GR KTGTPAR+D  +I + K   Q  D++   FSF+++     Q+ C +T 
Sbjct: 188 CLADLGIKLGRFKTGTPARVDRNSIDFSKMSIQPGDKKTHNFSFISEIKEREQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  + +Y+G IKS GPRYCPSIE K+VRF ++  HQ+F+EPEG NT  
Sbjct: 248 TTEETHRIIRENLHRAPLYTGVIKSQGPRYCPSIETKVVRFSDKPAHQVFIEPEGRNTTE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q   +RT+PGLE+V ++RPGYAIEYDY+   +L P+LETK I GLF
Sbjct: 308 MYVQGMSTSLPEDVQLAMLRTLPGLERVEMMRPGYAIEYDYVVATQLKPSLETKAIPGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A      +    +R+++YIGV+IDDL +K + EPY
Sbjct: 368 TAGQINGTSGYEEAAAQGIMAGINAALYVKNREPFILNRSEAYIGVLIDDLVTKEIDEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-KSLVL 483
           RM TSRAEYR+ LR DNAD RLT  G K+G +   R  ++ +  +     R  L K++V 
Sbjct: 428 RMLTSRAEYRLLLRQDNADLRLTEKGYKIGLVSPERYAKYERKKKLVEEERQRLEKTMVA 487

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +     +    G   +  +    L  P+   ++L  I  +       V E+++I+ 
Sbjct: 488 VGDEVKRVLEAANSPGLPQQGISLAGLLRRPEIGYEHLLQIPGNHPDLPDEVREQVEIQI 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  + ++ +  E++ IP+D DY  +  LS E +EKL +++P ++ QAS+I G
Sbjct: 548 KYEGYIKKQQAQVEKFRRLEEKKIPQDIDYGRVRGLSVEAREKLEMIRPASIGQASRIAG 607

Query: 601 MTPAALNLLLIYIKKNTVK 619
           +TPA +++LLIY+++   +
Sbjct: 608 VTPADVSVLLIYLERARRE 626


>gi|170718147|ref|YP_001785176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus somnus 2336]
 gi|189039343|sp|B0UWH3|MNMG_HAES2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168826276|gb|ACA31647.1| glucose inhibited division protein A [Haemophilus somnus 2336]
          Length = 629

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 395/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++   T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTENYDVIVIGGGHAGTEAALATARMKLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR  ++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     EK+ I+ +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEVTDIILEKDSIAGVETKMGLKFRAKSVVLTAGTFLAGKIHIGLENYAGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L       +    RLKTGTP R+D +TI +D   KQ+ DE+L  FSFM     +  QI C
Sbjct: 183 LAKKLRDLNLRVNRLKTGTPPRIDARTINFDILAKQYGDEKLPVFSFMGSVEQHPEQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNDQTHDVIRKNLDRSPMYTGVIEGIGPRYCPSIEDKVIRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMKIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +YIGV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKESWFPRRDQAYIGVLVDDLCTVGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLT I  +LG I + R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTSIARELGLIDDIRWARFNQKMENIELERQRLRS 482

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  I      +     + L  P+ + Q L ++ P          +E++
Sbjct: 483 IWLHPRSEYLNEANEILKSPLVREVNGEDLLRRPEINYQILTALTPFKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E +  K  E   IP +FDY ++  LSNE+  KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIERQKRHENTAIPANFDYKNISGLSNEVCAKLEQYRPISIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGITPAAISILLVNLKKQGM 624


>gi|312794883|ref|YP_004027805.1| glucose inhibited division protein A [Burkholderia rhizoxinica HKI
           454]
 gi|312166658|emb|CBW73661.1| Glucose inhibited division protein A [Burkholderia rhizoxinica HKI
           454]
          Length = 669

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/639 (46%), Positives = 397/639 (62%), Gaps = 19/639 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMAVATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQSNLWLFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++  V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLIIEGDRVAGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGI 242
              +     GRLKTGTP R+DG++I + K E+Q  D   IP FSF+     + RQ+ C I
Sbjct: 186 RLRELKLPQGRLKTGTPPRIDGRSIDFLKLEEQPGDLDPIPVFSFLGCADQHPRQVSCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL T
Sbjct: 246 THTNARTHEIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   IR++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 306 NEFYPNGVSTSLPFDVQLNLIRSMKGLEHAHILRPGYAIEYDYFDPRALKASLETKAIAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R   + D     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRFVQQRDAWVPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R + F++  +  +   + LKS+ 
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWEAFSRKREAVSRETARLKSIW 485

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +  K L +    ++  K      +  + L  P  S + L ++            D     
Sbjct: 486 VNPKTLPAEDAVALLGKPIDHEYSLADLLRRPGVSYEGLMALQASRYAPPDVLVDDPGLF 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V  +++I   Y  Y  RQ  E +  +  E   +P D DY  +  LS E+ +KL+  +P
Sbjct: 546 EQVKYQIEIGIKYQGYIERQAGEIERNEAHENTRLPADLDYVQVRGLSFEVCQKLNHHRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN----TVKLNEIV 624
             + QAS+I G+TPAA++LL++++KK     T+K + + 
Sbjct: 606 ETIGQASRISGVTPAAISLLMVHLKKGLGRSTLKKSAVA 644


>gi|311032249|ref|ZP_07710339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus sp. m3-13]
          Length = 629

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 396/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EA   AA+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGVEAGLAAARQGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I ++EN+ ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIENEENITLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  ++    TVV+TTGTFLRG I +G+L+  +G     PS +L  
Sbjct: 127 EKLIVEDGVCKGVITQTGAIYESKTVVITTGTFLRGKIILGELQYLSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVNSASIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSAETHQLIDDNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETK+I  L+
Sbjct: 307 VYVQGLSTSLPEDVQRKILSTIPGLENVRMMRAGYAIEYDAIVPTQLWPTLETKRIQNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ R++   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRRALGEEDLILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG K+G I   R  +F +  QE    +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHKIGLISPERFAKFEEKKQEIEAEKERLQSIIIK 486

Query: 485 SK-----NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG    A + L  P+ +  ++  + P  ++ S  V E+++I+
Sbjct: 487 PNVQVQTIIREAGGSELKDGIR--AADLLKRPEMTYNHIHQMVPADKEISPDVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +   +K  E + IP++ DY  +  L+NE ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIQKSLQQVDRLKKMENKKIPENIDYDDIHGLANEARQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADVSILLVYLEQGRI 623


>gi|157694474|ref|YP_001488936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pumilus SAFR-032]
 gi|166989734|sp|A8FJF9|MNMG_BACP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157683232|gb|ABV64376.1| glucose-inhibited division protein A [Bacillus pumilus SAFR-032]
          Length = 628

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ + ++ NL ++QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKKTMENEPNLTMLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +    +V Q  +  R  +VVLTTGTFL+G I +G L   +G     PS  L +
Sbjct: 127 DHLIVKDDECKGVVTQTGANYRAKSVVLTTGTFLKGRIILGDLSYSSGPNNQQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLADLGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+LETH+II EN+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSLETHQIIDENLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKISGL+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKISGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-----K 479
           R+ TSRAEYR+ LR DNAD RLT +G  +G I + R + F +  +     +  L     K
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYHIGLISQERFQAFQQKKEAIEAEKKRLYSVIIK 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T + + S   S  +DG    A + +  P+ + +++  + P      S V E+++I+
Sbjct: 487 PTAETQEFIRSLGGSELKDGIR--ASDLMKRPEMNYESVVRLAPAETPLPSDVCEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E K+KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEAKQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|292490169|ref|YP_003533064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora CFBP1430]
 gi|292901171|ref|YP_003540540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Erwinia amylovora ATCC 49946]
 gi|291201019|emb|CBJ48158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Erwinia
           amylovora ATCC 49946]
 gi|291555611|emb|CBA24238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora CFBP1430]
          Length = 629

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/618 (47%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +T+ +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTVDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHQVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIELERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVAEVNSVISAALTKEASGEDLLRRPEMTYQQLMTLKHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  ++P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTVLPVDLDYQQVSGLSNEAIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|209515787|ref|ZP_03264650.1| glucose inhibited division protein A [Burkholderia sp. H160]
 gi|209503814|gb|EEA03807.1| glucose inhibited division protein A [Burkholderia sp. H160]
          Length = 652

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/631 (44%), Positives = 386/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDYSQLEEQPGDLDPVPVFSFLGRVEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQI+LEPE
Sbjct: 242 PCWVTHTNQRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIYLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQG +AGIN+       +  C  R  +Y+GV++DDL ++
Sbjct: 362 VIGGLFFAGQINGTTGYEEAAAQGALAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETQRL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           +S  +  K L    +T++  K      +  + L  P  S   +  +       P+A    
Sbjct: 482 RSTWVNPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCGLRNGACGAPEALAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  + +E   +P+  DY+ +  LS E ++KL 
Sbjct: 542 PVLLAQIKEQIEIGVKYQGYIDRQADEIERNEAQENTRLPEGLDYTEVRGLSFEARQKLM 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|152978019|ref|YP_001343648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus succinogenes 130Z]
 gi|171472940|sp|A6VL66|MNMG_ACTSZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150839742|gb|ABR73713.1| glucose inhibited division protein A [Actinobacillus succinogenes
           130Z]
          Length = 629

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/622 (47%), Positives = 389/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTENYDVIVIGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A+++ + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADRAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRQALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E+   + +  +     R   V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILLERERAAGVSTKMGLTFRAKAVILTAGTFLAGKIHIGLTNYEGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L +          RLKTGTP RLD +TI +D   KQ+ D  L  FSFM +     RQI C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRLDARTINFDILAKQYGDAELPVFSFMGSTDQHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +R  HQI+LEPEGL
Sbjct: 243 FITHTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKIMRFADRTSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q + + ++ GLE   I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMKIVNSMKGLENTRIVKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL + G 
Sbjct: 363 GGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVREKDAWFPRRDQAYVGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD+RLTPI  +LG I E R  RF + +      R  LK 
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADSRLTPIAHELGLIDEARWARFNRKMDNITKERERLKQ 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + +  ++     I+        +  +  + L  P+ S + L      +         E++
Sbjct: 483 IWIHPQSEHLNHINGLLNAPLTREASGEDLLRRPEVSYEKLTKTAAFSPALEDKQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E  LIP+ FDYS +  LSNE++ KL   +P ++ QA 
Sbjct: 543 EIAIKYQGYIEHQQEEIEKQKRHENTLIPERFDYSLVAGLSNEVRAKLEQHRPVSIGQAG 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGVTPAAISILLVNLKKQGM 624


>gi|153948674|ref|YP_001403128.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis IP 31758]
 gi|166989740|sp|A7FPF0|MNMG_YERP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152960169|gb|ABS47630.1| glucose-inhibited division protein A [Yersinia pseudotuberculosis
           IP 31758]
          Length = 629

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 397/619 (64%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q +V
Sbjct: 66  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQQV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L S+             ++++I+
Sbjct: 486 HPHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|238753970|ref|ZP_04615329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia ruckeri ATCC 29473]
 gi|238707722|gb|EEQ00081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia ruckeri ATCC 29473]
          Length = 629

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 393/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAIATDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D+ +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDDPVPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G+E   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGMENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  +     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDDEGWFPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   ++  I++    R  L+ +++
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDARWAHYSLKIEQIEKERQRLRDIMV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              +     I+        K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPNSEKIQEINALLKAPLSKEANGEELLRRPEIDYRMLTALDKFGPALSDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +     E  L+P D DYS +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIERQLRNENTLLPTDLDYSQVSGLSNEVTAKLNDHKPSSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GVTPAAISILLVWLKKQGL 624


>gi|56965873|ref|YP_177607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus clausii KSM-K16]
 gi|81170520|sp|Q5WAG4|MNMG_BACSK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56912119|dbj|BAD66647.1| glucose inhibited division protein A [Bacillus clausii KSM-K16]
          Length = 629

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/618 (44%), Positives = 389/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   TFDVIVIGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+R I  QENL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFRYQQEMKRTIEEQENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R   VV+TTGT+LRG I +G+L   +G     PS  L +
Sbjct: 127 DRLIIEDGECRGVITNTGAQYRAKAVVVTTGTYLRGKIILGELSYESGPNNMQPSIKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+ G TI + KTE Q  D++   FS+ T K    Q+ C +T 
Sbjct: 187 HLKELGFDLVRFKTGTPPRVHGNTIDYKKTEIQPGDDKPRAFSYETTKFITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH+II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 247 TSENTHQIISANLGRSPMYSGMIEGTGPRYCPSIEDKIVRFSDKPRHQIFLEPEGRDTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   ++TIPGLE+V ++RPGYAIEYD I P +L+PTLETKKISGLF
Sbjct: 307 VYVQGLSTSLPEDVQLSMLKTIPGLEEVRMMRPGYAIEYDAIVPTQLWPTLETKKISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A+K+   + +   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAAQKAFGKEGVILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT  G +LG I E R  RF    +     +  + +LV+ 
Sbjct: 427 RLLTSRAEFRLILRHDNADLRLTEKGYELGLISEERYSRFKAKQEAIEQEKQRISALVVK 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
             +  +     +  +   +   A   L  P+ +  +   I P    +    V E+++I+ 
Sbjct: 487 PSDEVNQLLERLGSRSMTEALKATAVLKRPEMTYDHFLKIIPRPDVELDDEVYEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  + + +K  E++ IP+D DY ++  ++ E ++KL  ++P ++ QAS++ G
Sbjct: 547 KYEGYIEKQWQQIERLKKMEQKRIPEDLDYDAIQGIATEARQKLKQVRPLSVGQASRVSG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 607 VNPADISILLVYLEQGRL 624


>gi|312174362|emb|CBX82615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia amylovora ATCC BAA-2158]
          Length = 629

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/618 (47%), Positives = 390/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+D +T+ +     Q  D  L  FSFM D   + RQ+ C IT 
Sbjct: 187 LRELPLRFGRLKTGTPPRIDARTVDFSVLAPQHGDTPLPVFSFMGDVSQHPRQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH++I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHQVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTEAGRELGLVDDARWARFNEKLESIEQERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVAQVNSVISAALTKEASGEDLLRRPEMTYQQLMTLKHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E  ++P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTVLPVDLDYQQVSGLSNEAIAKLNDHKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|238783013|ref|ZP_04627040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia bercovieri ATCC 43970]
 gi|238716014|gb|EEQ07999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia bercovieri ATCC 43970]
          Length = 629

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/619 (47%), Positives = 397/619 (64%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   + +     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAITKMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIVRPGYAIEYDFFDPRDLKPTLESKYIHGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F+K I++    R  L+ +++
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVDDERWAHFSKKIEQIEKERQRLRDILV 485

Query: 484 TS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
               +N+S  +   K    K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPLSENVSEINELLKAPLSKEANGEELLRRPEIDYRLLMTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|222530700|ref|YP_002574582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457547|gb|ACM61809.1| glucose inhibited division protein A [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 628

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 385/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      ++G+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSVGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLD+ Q EV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDIRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + +G+    +G  G  P+  L  
Sbjct: 127 CEVLVEDGRVKGVKITTGAVFLAKAVVLATGTFLGGRVIVGETVFDSGPDGMHPARYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T
Sbjct: 187 NLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFNIEQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP G++TD
Sbjct: 247 YTTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGIDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 307 EMYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G I ++R ++F +  +      + +K+ ++
Sbjct: 427 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLISQQRYEKFLQKKKMIEDEINRVKNTII 486

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I  +       V + ++IE 
Sbjct: 487 APSEKVNKLLLQKGSSPISTGVRLSDLLKRPELSYEDLKEIDINRPDLPWYVQDEVEIEI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+   ++ K  E + IP+  DY+ +  LS E K+KLS +KP ++ QAS+I G
Sbjct: 547 KYEGYIKKQLERIEQFKKLENKKIPEWVDYNKIAGLSTEAKQKLSQIKPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 607 VSPADISVLLIWLE 620


>gi|89100946|ref|ZP_01173793.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
 gi|89084355|gb|EAR63509.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
          Length = 629

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 388/619 (62%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAG EA   A +LGA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   NYDVIVIGAGHAGVEAGLAAGRLGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I ++ N+ ++QG V
Sbjct: 67  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFTYQHEMKKTIENEPNITLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +     TVV+TTGTFLRG I +G+LK  +G     PS  L  
Sbjct: 127 EKLIVEDGVCKGVVTMTGAAYSAKTVVITTGTFLRGEIILGELKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++  TI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDMVRFKTGTPPRVNSHTIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNETTHSLIDDNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + +RTIPGLE V ++R GYAIEYD I P +L+PTLETKK+  L+
Sbjct: 307 VYVQGLSTSLPEDVQQKILRTIPGLENVQMMRAGYAIEYDSIVPTQLWPTLETKKVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+   +   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAGLNALGKEELILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G K+G I + R  RF +  Q     +  L+S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDAGHKIGLISDERYGRFTEKKQAIEAEKERLRSIIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + +   S  +DG    A + L  P+ S +++    P        V E+++I+
Sbjct: 487 PSAEVQEMIKNQGGSELKDGIR--ASDLLKRPEMSYEHIKLAAPADADLDFDVTEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + +P++ DY ++  L++E ++KL  ++P ++ QAS+I 
Sbjct: 545 LKYEGYIEKSLQQVERLKKMENKKVPENIDYDAINGLASEARQKLKEVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  V
Sbjct: 605 GVNPADISILLVYLEQGRV 623


>gi|59713182|ref|YP_205958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri ES114]
 gi|197333896|ref|YP_002157362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri MJ11]
 gi|75353166|sp|Q5E1M6|MNMG_VIBF1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238690284|sp|B5FDA8|MNMG_VIBFM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|59481283|gb|AAW87070.1| glucose-inhibited cell-division protein [Vibrio fischeri ES114]
 gi|197315386|gb|ACH64833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio fischeri MJ11]
          Length = 629

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/624 (45%), Positives = 392/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  + ++DVIVIGGGHAG EAA  AA+ G +T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDNFDVIVIGGGHAGTEAALAAARTGQNTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q NL +
Sbjct: 61  KEVDALGGLMAQAIDHSGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENQPNLTL 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R  +VVLT GTFL G IHIG      GR GD  S
Sbjct: 121 FQQAVDDLIIENDKVMGAVTQMGLKFRAKSVVLTAGTFLGGQIHIGMENFSGGRAGDPSS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-I 238
            +L     +  F   RLKTGTP R+D +++ +   E Q  D     FSF+  +  + Q +
Sbjct: 181 ITLAQRLRERPFRIDRLKTGTPPRIDARSVDFSGLEAQPGDNPTPVFSFLGKREHHPQQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPE
Sbjct: 241 NCFITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK
Sbjct: 301 GLSTHELYPNGISTSLPFDVQLQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKSTYETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N++  +   +     R ++Y+GV+IDDL++ 
Sbjct: 361 FIEGLFFAGQINGTTGYEEAAAQGLMAGLNASLFAQGKEGWSPRRDEAYMGVLIDDLSTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  RF + ++     R  L
Sbjct: 421 GTKEPYRMFTSRAEYRLLLREDNADLRLTEQGRTLGLVDDVRWARFNEKVENMEQERQRL 480

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K + +  K+       +I      +  +  + L  P+ + Q+L SI         S   E
Sbjct: 481 KDIWINPKSEQVDQVNAILKTPIAREASGEDLLRRPEVNYQSLVSIDGFGPALEDSQASE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  YA Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  
Sbjct: 541 QVEIQVKYAGYIQRQRDEIEKSLRHENTKLPFDLDYKEVKGLSNEVVAKLSDAKPETIGI 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK+ +
Sbjct: 601 ASRISGITPAAISILLVHLKKHGL 624


>gi|296157546|ref|ZP_06840381.1| glucose inhibited division protein A [Burkholderia sp. Ch1-1]
 gi|295892318|gb|EFG72101.1| glucose inhibited division protein A [Burkholderia sp. Ch1-1]
          Length = 652

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/636 (44%), Positives = 391/636 (61%), Gaps = 15/636 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRGRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++
Sbjct: 362 VINGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQGKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           ++  +  K L    +T++  K      +  + L  P  S   + ++       P+     
Sbjct: 482 RTTWVNPKTLSTDEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPETLAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+
Sbjct: 542 DVLLGQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             +P  + QAS+I G+TPAA++LL++++K+   + +
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRGLGRRS 637


>gi|91777103|ref|YP_546859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacillus flagellatus KT]
 gi|123380252|sp|Q1GXL9|MNMG_METFK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91711090|gb|ABE51018.1| glucose inhibited division protein A [Methylobacillus flagellatus
           KT]
          Length = 634

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/624 (45%), Positives = 397/624 (63%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVI++GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FSEKFDVIIVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q
Sbjct: 63  VDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V Q         VVLT GTFL G++H+G     AGR GD P+ S
Sbjct: 123 QAVDDIILEGERVAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L     +     GRLKTGTP R+DG+TI +    +Q  D  +  FSF+     +  Q+ C
Sbjct: 183 LAARLREIGLPAGRLKTGTPPRIDGRTIDYSVMAEQPGDSPVPVFSFLGSAEQHPAQLPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +Y+G I+  GPRYCPS+EDKI RF +++ HQ+FLEPEGL
Sbjct: 243 WITFTNEKTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKDSHQVFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I
Sbjct: 303 TTNEIYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKSSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG N+A  + + D    +R  +Y+GV++DDL ++GV
Sbjct: 363 RGLFFAGQINGTTGYEEAAAQGLLAGANAALYAQEKDAWWPTRDQAYLGVLVDDLITRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + F +  +     +  L+ 
Sbjct: 423 SEPYRMFTSRAEYRLMLREDNADMRLTEAGRKLGLVDDVRWEAFQRKQEAIEREQQRLRR 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERL 536
             +  +++    +     K   +  + +E L  P+ S + L S+      +    V ++L
Sbjct: 483 TFIHPQHVPQEQLQQVFGKVLEREYSMFELLRRPEVSYEALLSLPQAGEGEADPQVRQQL 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y  Y  RQ  E + +K  E   +P + DYS +  LS E+++KL+  KP  + QA 
Sbjct: 543 EIVAKYQGYIDRQAEEIERLKESEHYRLPLNMDYSEVHGLSIEVQQKLNKQKPETIGQAG 602

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+TPAA++LLL+++K+ + K 
Sbjct: 603 RISGVTPAAVSLLLVHLKRKSRKA 626


>gi|261410104|ref|YP_003246345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. Y412MC10]
 gi|261286567|gb|ACX68538.1| glucose inhibited division protein A [Paenibacillus sp. Y412MC10]
          Length = 628

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 385/621 (61%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VRE
Sbjct: 4   MGGTYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + Q
Sbjct: 64  IDALGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKETMEKEEKLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E  +   IV Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  
Sbjct: 124 GMVDQLIVEDGVCVGIVTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVK 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R+   TI + KTE Q  DE+   FS+ T    N Q+ C 
Sbjct: 184 LAHNLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSYETKSSDNEQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG N
Sbjct: 244 LTYTSVDTHKIINDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G+ST++PE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ 
Sbjct: 304 TKEYYVQGLSTSMPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  
Sbjct: 364 GLFTAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVILDRSQGYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  +G I E R  +F    Q        L+  
Sbjct: 424 EPYRLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISEERYAKFVLKKQLVEQEIERLRQT 483

Query: 482 VLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +        L +   +   DG        L  P+ +   + S+ P   +    + E+++
Sbjct: 484 KVKPVEVNAMLEAAGSAPIVDGSNML--TILRRPEITFAMVESLSPSPYELDEEMKEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+
Sbjct: 542 IQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDEINGLAMEARQKLNKIRPISIGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPA +++LL+Y++    
Sbjct: 602 IAGVTPADISILLVYLEHYNR 622


>gi|254505046|ref|ZP_05117197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Labrenzia alexandrii DFL-11]
 gi|222441117|gb|EEE47796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Labrenzia alexandrii DFL-11]
          Length = 643

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/618 (57%), Positives = 458/618 (74%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIGGGHAGCEAAA +A++GA TAL+THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 23  SFDVVVIGGGHAGCEAAAASARMGAKTALVTHKFETIGVMSCNPAIGGLGKGHLVREIDA 82

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LYR AMQREI + ENL V++GE 
Sbjct: 83  LDGLMGRVADQGGIQFRMLNRRKGPAVRGPRAQADRKLYREAMQREIAAVENLTVVEGEA 142

Query: 125 AGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                       ++ IV+    +I C  VVLT+GTFLRG+IHIG  KIPAGR G++P+  
Sbjct: 143 EQLRFSGADARSVTGIVLASGQVIDCGAVVLTSGTFLRGLIHIGDRKIPAGRSGEAPAMG 202

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +  FD GRLKTGTPARLDG+TI WD+ E+Q  DE  IPFS +TDKI+  QI C 
Sbjct: 203 LSHSLEQIGFDLGRLKTGTPARLDGRTIHWDRLEEQPGDEEPIPFSTLTDKISIPQIPCH 262

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  ETH+II +N+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 263 ITRTTPETHQIIRDNLDRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 322

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE+ Q  F+RTIPGLE V +I+PGYAIEYD+++P+EL  TLE K+ +
Sbjct: 323 DHTVYPNGISTSLPEDAQIAFLRTIPGLENVEVIQPGYAIEYDHVDPRELRATLEAKRCA 382

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A K          R+  YIGVMIDDL ++G+ 
Sbjct: 383 GLYLAGQINGTTGYEEAGAQGLVAGLNAALKVADKAPFIVDRSQGYIGVMIDDLITRGIT 442

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+G+++GC+ + R+  +   +++    R LL+SL
Sbjct: 443 EPYRMFTSRAEYRLSLRADNADQRLTPLGIEIGCVSDDRRAAYEAKMEKILAARDLLQSL 502

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   QDG  R+A++ LSYP  +   L  + P+       V+E++  ++ 
Sbjct: 503 TVTPNEATKKGLPVNQDGVRRSAFDLLSYPKVTFDGLQMVWPELGHMDPAVVEQVTTDAL 562

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + + +K +E   IP DFDY ++  LSNE+K+KL+ ++P  L QAS+++GM
Sbjct: 563 YAVYLERQTADIEALKRDEALGIPDDFDYEAIVGLSNEVKQKLADIRPATLGQASRMDGM 622

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAAL L+L ++K+ + +
Sbjct: 623 TPAALTLILSHLKRQSQR 640


>gi|51598260|ref|YP_072451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis IP 32953]
 gi|108810165|ref|YP_654081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Antiqua]
 gi|108814147|ref|YP_649914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Nepal516]
 gi|145601143|ref|YP_001165219.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Pestoides F]
 gi|150260936|ref|ZP_01917664.1| glucose inhibited division protein A [Yersinia pestis CA88-4125]
 gi|161484718|ref|NP_671435.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM 10]
 gi|161511281|ref|NP_995299.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis biovar Microtus str. 91001]
 gi|162421890|ref|YP_001608482.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis Angola]
 gi|165926144|ref|ZP_02221976.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939987|ref|ZP_02228524.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009678|ref|ZP_02230576.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213177|ref|ZP_02239212.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401658|ref|ZP_02307152.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422861|ref|ZP_02314614.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425519|ref|ZP_02317272.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468637|ref|ZP_02333341.1| glucose-inhibited division protein A [Yersinia pestis FV-1]
 gi|170026421|ref|YP_001722926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis YPIII]
 gi|186897459|ref|YP_001874571.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pseudotuberculosis PB1/+]
 gi|218931106|ref|YP_002348981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis CO92]
 gi|229839841|ref|ZP_04460000.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841925|ref|ZP_04462081.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229896802|ref|ZP_04511965.1| glucose-inhibited cell-division protein [Yersinia pestis Pestoides
           A]
 gi|229904691|ref|ZP_04519802.1| glucose-inhibited cell-division protein [Yersinia pestis Nepal516]
 gi|270488401|ref|ZP_06205475.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM D27]
 gi|294505652|ref|YP_003569714.1| glucose-inhibited division protein A [Yersinia pestis Z176003]
 gi|21263668|sp|Q8Z9R8|MNMG_YERPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170592|sp|Q663P9|MNMG_YERPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123072470|sp|Q1C086|MNMG_YERPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123246082|sp|Q1CCG6|MNMG_YERPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166224339|sp|A4TSI4|MNMG_YERPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831572|sp|B1JR32|MNMG_YERPY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238687314|sp|A9R5U9|MNMG_YERPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238691428|sp|B2K7J2|MNMG_YERPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51591542|emb|CAH23214.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           IP 32953]
 gi|108777795|gb|ABG20314.1| glucose inhibited division protein A [Yersinia pestis Nepal516]
 gi|108782078|gb|ABG16136.1| glucose inhibited division protein A [Yersinia pestis Antiqua]
 gi|115349717|emb|CAL22698.1| glucose inhibited division protein A [Yersinia pestis CO92]
 gi|145212839|gb|ABP42246.1| glucose inhibited division protein A [Yersinia pestis Pestoides F]
 gi|149290344|gb|EDM40421.1| glucose inhibited division protein A [Yersinia pestis CA88-4125]
 gi|162354705|gb|ABX88653.1| glucose-inhibited division protein A [Yersinia pestis Angola]
 gi|165912113|gb|EDR30753.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922004|gb|EDR39181.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991600|gb|EDR43901.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205475|gb|EDR49955.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958253|gb|EDR55274.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049040|gb|EDR60448.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055533|gb|EDR65326.1| glucose-inhibited division protein A [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752955|gb|ACA70473.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           YPIII]
 gi|186700485|gb|ACC91114.1| glucose inhibited division protein A [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678809|gb|EEO74914.1| glucose-inhibited cell-division protein [Yersinia pestis Nepal516]
 gi|229691264|gb|EEO83317.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696207|gb|EEO86254.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700240|gb|EEO88276.1| glucose-inhibited cell-division protein [Yersinia pestis Pestoides
           A]
 gi|262363817|gb|ACY60538.1| glucose-inhibited division protein A [Yersinia pestis D106004]
 gi|262367753|gb|ACY64310.1| glucose-inhibited division protein A [Yersinia pestis D182038]
 gi|270336905|gb|EFA47682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Yersinia pestis KIM D27]
 gi|294356111|gb|ADE66452.1| glucose-inhibited division protein A [Yersinia pestis Z176003]
 gi|320017466|gb|ADW01038.1| glucose-inhibited cell-division protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 629

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 396/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V
Sbjct: 66  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWV 485

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L S+             ++++I+
Sbjct: 486 HPHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|261491714|ref|ZP_05988294.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495536|ref|ZP_05991983.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308870|gb|EEY10126.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312553|gb|EEY13676.1| glucose inhibited cell division protein A [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 630

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/623 (47%), Positives = 388/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N+ YDVIV+GGGHAG EAA   A++G  T ++TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRVLYRNAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +   VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  DE L  FSFM D   + RQI 
Sbjct: 182 MLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVFSFMGDVSQHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRYCPSIEDKVMRFADRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LNTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AGIN A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLLAGINVALQVQGKEAWYPTRDQAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTP   +LG I E R  RF + ++     R+ LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPKAHELGLIDEARWVRFNQKMEAIEQERARLK 481

Query: 480 SLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           S              ++      +  +  + +  P+ S + L  I   A         E+
Sbjct: 482 STWAHLQMPNLDELNALLANPLAREASGEDLIRRPEMSYEKLTQIALFAPAIEDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEIAIKYQGYIEHQYNEIERHKRHENTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|229530212|ref|ZP_04419601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae 12129(1)]
 gi|229332345|gb|EEN97832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae 12129(1)]
          Length = 631

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/630 (44%), Positives = 387/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  M+  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYMRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQMQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|312623583|ref|YP_004025196.1| glucose inhibited division protein a [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312204050|gb|ADQ47377.1| glucose inhibited division protein A [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 628

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 385/614 (62%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG  T +      ++G+M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALASARLGLKTIIFAINLDSVGNMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ R+LN  KGPAV   R Q DR  YRL M+R + +QENLDV Q EV
Sbjct: 67  LGGEMGKAADATAIQVRILNRAKGPAVYSLRAQCDRSRYRLYMKRVLENQENLDVRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  + +   ++     VVL TGTFL G + IG+    +G  G  P+  L  
Sbjct: 127 CEVLVEDGRVKGVKITTGAVFLAKAVVLATGTFLGGRVIIGETVFDSGPDGMHPARYLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           +  K   +  R KTGTPAR+  +++ + K + Q  DE+ +PFSF   D     Q+ C +T
Sbjct: 187 NLKKLGIEMMRFKTGTPARVHRRSLDFSKMQIQPGDEKPLPFSFENEDNFIIEQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN+  + +++G I   GPRYCPSIEDKIVRF ++  HQ+F+EP G++TD
Sbjct: 247 YTTEETHRIIRENLHRAPLFTGLISGVGPRYCPSIEDKIVRFADKPRHQVFIEPTGIDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LPE++Q +  R++ GLE V I+RP YAIEYD INP +L PTL+ KKI GL
Sbjct: 307 EMYVQGMSTSLPEDVQVKMYRSVIGLENVKIMRPAYAIEYDCINPLQLEPTLQFKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQG++AGIN+A      + +   R+ +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQINGTSGYEEAAAQGIIAGINAAMYVKGKEMLILDRSQAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT IG K+G I ++R ++F +  +      + +K+ ++
Sbjct: 427 YRIMTSRAEYRLILRQDNADLRLTEIGYKIGLISQQRYEKFLQKKKMIEDEINRVKNTII 486

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  K      T     + L  P+ S ++L  I  +       V + ++IE 
Sbjct: 487 APSEKVNKLLLQKGSSPISTGVRLSDLLKRPELSYEDLKEIDINRPDLPWYVQDEVEIEI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+   ++ K  E + IP+  DY+ +  LS E K+KLS ++P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLERIEQFKKLENKKIPEWVDYNKIAGLSTEAKQKLSQIRPASIGQASRISG 606

Query: 601 MTPAALNLLLIYIK 614
           ++PA +++LLI+++
Sbjct: 607 VSPADISVLLIWLE 620


>gi|15967090|ref|NP_387443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium meliloti 1021]
 gi|307302552|ref|ZP_07582309.1| glucose inhibited division protein A [Sinorhizobium meliloti
           BL225C]
 gi|21263672|sp|Q92KW2|MNMG_RHIME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15076363|emb|CAC47916.1| Probable glucose inhibited division protein A [Sinorhizobium
           meliloti 1021]
 gi|306903222|gb|EFN33812.1| glucose inhibited division protein A [Sinorhizobium meliloti
           BL225C]
          Length = 623

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/619 (61%), Positives = 473/619 (76%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAGCEAA+ +A+LGA T LITHK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   DYDVIVIGGGHAGCEAASASARLGARTVLITHKMDTIGVMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI   ENL VI+G+ 
Sbjct: 63  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREISGIENLSVIEGDA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE  ++    M+D  + R + VVLTTGTFL+G+IHIG+ KIPAGR+G+ PS  L  
Sbjct: 123 FDLLTEDGVVCGTAMKDGRIFRAAAVVLTTGTFLKGLIHIGQRKIPAGRVGEEPSLGLSG 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TR
Sbjct: 183 TLRRFGLQLGRLKTGTPARLDGRTIDWDRVGRQGPDENPVPFSFMTDAIINRQIDCGVTR 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 243 TTDATHKIIADNIHQSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL  +L  +K+ GLF
Sbjct: 303 VYPNGISTSLPEDVQDAFIRTIPGLEQVKILQPGYAIEYDHVDPRELELSLGVRKMPGLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+A +S       FSRTDSYIGVMIDDLTS+G+ EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLVAGLNAALRSIGRAPHFFSRTDSYIGVMIDDLTSRGITEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R++RF  +   Y   R+LL+SL +T
Sbjct: 423 RMFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETGRTLLQSLSVT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG+ RTA++ LSYPD SI  L  + P+ +   + V+E L+I+++YA 
Sbjct: 483 PSEGKRFGLKLNQDGQRRTAFDILSYPDQSIAALKPLWPELQTIPAGVVEALEIDAAYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ +E   IP DFDY  LP LSNELK+KL+  KP NL QA K++G+TPA
Sbjct: 543 YMERQATDIAGVRRDENTSIPDDFDYEVLPGLSNELKQKLAQHKPRNLAQAMKVDGVTPA 602

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A++L+L ++++   +   +
Sbjct: 603 AISLILSWLRRQVRQAQRV 621


>gi|307316117|ref|ZP_07595561.1| glucose inhibited division protein A [Sinorhizobium meliloti AK83]
 gi|306897957|gb|EFN28699.1| glucose inhibited division protein A [Sinorhizobium meliloti AK83]
          Length = 623

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/619 (61%), Positives = 473/619 (76%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAGCEAA+ +A+LGA T L+THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   DYDVIVIGGGHAGCEAASASARLGARTVLMTHKMDTIGVMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI   ENL VI+G+ 
Sbjct: 63  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREISGIENLSVIEGDA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE  ++    M+D  + R + VVLTTGTFL+G+IHIG+ KIPAGR+G+ PS  L  
Sbjct: 123 FDLLTEDGVVCGTAMKDGRIFRAAAVVLTTGTFLKGLIHIGQRKIPAGRVGEEPSLGLSG 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TR
Sbjct: 183 TLRRFGLQLGRLKTGTPARLDGRTIDWDRVGRQGPDENPVPFSFMTDAIINRQIDCGVTR 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 243 TTDATHKIIADNIHQSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL  +L  +K+ GLF
Sbjct: 303 VYPNGISTSLPEDVQDAFIRTIPGLEQVKILQPGYAIEYDHVDPRELELSLGVRKMPGLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+A +S       FSRTDSYIGVMIDDLTS+G+ EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLVAGLNAALRSIGRTPHFFSRTDSYIGVMIDDLTSRGITEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R++RF  +   Y   R+LL+SL +T
Sbjct: 423 RMFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETGRTLLQSLSVT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG+ RTA++ LSYPD SI  L  + P+ +   + V+E L+I+++YA 
Sbjct: 483 PSEGKRFGLKLNQDGQRRTAFDILSYPDQSIAALKPLWPELQTIPAGVVEALEIDAAYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ +E   IP DFDY  LP LSNELK+KL+  KP NL QA K++G+TPA
Sbjct: 543 YMERQATDIAGVRRDENTSIPDDFDYEVLPGLSNELKQKLAQHKPRNLAQAMKVDGVTPA 602

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A++L+L ++++   +   +
Sbjct: 603 AISLILSWLRRQVRQAQRV 621


>gi|315644289|ref|ZP_07897459.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus vortex V453]
 gi|315280664|gb|EFU43953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus vortex V453]
          Length = 628

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/619 (43%), Positives = 385/619 (62%), Gaps = 2/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VRE
Sbjct: 4   MGGTYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + Q
Sbjct: 64  IDALGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKETMEKEEKLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E  +   I+ Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  
Sbjct: 124 GMVDQLIVEDGVCVGILTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVK 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C 
Sbjct: 184 LAHNLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDKPKFFSYETKSSDNEQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG N
Sbjct: 244 LTYTSVDTHQIINDNLHRAPMFSGIIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G+ST+LPE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ 
Sbjct: 304 TKEYYVQGLSTSLPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  
Sbjct: 364 GLFTAGQINGTSGYEEAAGQGIMAGINAARKVQDKEPVVLDRSQGYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  +G I E R  +F +  Q        L+  
Sbjct: 424 EPYRLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISEERYAKFLQKKQLVEQEIERLRQA 483

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +    +++T  +               L  P+ S   + S+ P        + E+++I+
Sbjct: 484 KVKPVEVNATLEAAGSAPIVDGSNLLTILRRPEVSFAMIESLSPSPYDLDEDMKEQVEIQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+I 
Sbjct: 544 IKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDDINGLAMEARQKLNKIRPISIGQASRIA 603

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPA +++LL+Y++    
Sbjct: 604 GVTPADISILLVYLEHYNR 622


>gi|153212965|ref|ZP_01948559.1| glucose inhibited division protein A [Vibrio cholerae 1587]
 gi|153829679|ref|ZP_01982346.1| glucose inhibited division protein A [Vibrio cholerae 623-39]
 gi|124116191|gb|EAY35011.1| glucose inhibited division protein A [Vibrio cholerae 1587]
 gi|148874855|gb|EDL72990.1| glucose inhibited division protein A [Vibrio cholerae 623-39]
          Length = 631

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 387/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|297539954|ref|YP_003675723.1| glucose inhibited division protein A [Methylotenera sp. 301]
 gi|297259301|gb|ADI31146.1| glucose inhibited division protein A [Methylotenera sp. 301]
          Length = 633

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/626 (46%), Positives = 393/626 (62%), Gaps = 5/626 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRVLNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  + +V Q        +VVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DIILEGDRAAGVVTQIGLRFTSKSVVLTAGTFLGGLVHVGLQNYSAGRAGDPPAISLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D+ +  FSFM +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMTIQPGDDPVPVFSFMGNVAHHPAQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF +++ HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKDSHQIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 VYPNGISTSLPFDIQLALVRSVRGLENAHILRPGYAIEYDYYDPRGLKSSLETKMVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  S   +  C +R ++Y+GVM+DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYSQGKESWCPARDEAYLGVMVDDLITRGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F++  +     +  LK   + 
Sbjct: 427 RMFTSRAEYRLQLREDNADMRLTEIGRKLGLVDDARWEAFSRKKEAVEREQDRLKKTFVQ 486

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
             N+ +     +  K      + +E L  P+ S + + ++      +    V E+++I +
Sbjct: 487 PANVPTEKMVEMFGKPLEHEYSLFELLRRPEVSYEAVLTLGEIGLGEVEPSVREQVEIAA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E    + +E   +P + DY  +  L  E ++KL+  KP  + QAS+I G
Sbjct: 547 KYQGYIDRQTDEVARSRGQENTRLPDNLDYREIHGLPIEAQQKLNAQKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
           +TPAA++LLL+Y+K+ +       L 
Sbjct: 607 ITPAAISLLLVYLKRQSRSKPAADLA 632


>gi|227354887|ref|ZP_03839302.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis ATCC 29906]
 gi|227165040|gb|EEI49876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis ATCC 29906]
          Length = 632

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/622 (47%), Positives = 393/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTTLENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V +     R   VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENDQVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +   +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C I
Sbjct: 185 HRLRELPLRVGRLKTGTPPRIDARTIDFSQLAPQLGDNPMPVFSFLGNVDQHPEQMPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 THTNEQTHEIIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F++ ++     R  L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDNRWAQFSEKVELVEKERQRLRDIW 484

Query: 483 LTSK--NLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
           +  K  NL   +   K    K     + L  P+ + + L  I    P          E++
Sbjct: 485 VHPKADNLEEINQLLKTPLSKEANGEDLLRRPEMTYEILKKIPRFAPGIDDSRPQAAEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 545 EIQVKYEGYINRQQEEIEKQLRNESAALPIDIDYKQVSGLSNEVIAKLNDHKPTSIGQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 605 RISGVTPAAISILLVWLKKQGL 626


>gi|262172752|ref|ZP_06040430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus MB-451]
 gi|261893828|gb|EEY39814.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus MB-451]
          Length = 631

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/630 (45%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERLRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++         S   E+
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGEDLLRRPEMTYELLTTLPAFTPALEDSEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|183597128|ref|ZP_02958621.1| hypothetical protein PROSTU_00367 [Providencia stuartii ATCC 25827]
 gi|188023438|gb|EDU61478.1| hypothetical protein PROSTU_00367 [Providencia stuartii ATCC 25827]
          Length = 629

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/620 (46%), Positives = 388/620 (62%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EQFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMAIATDKAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++  V +     +   VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENNTVTGAVTRMGLKFKAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D+ +  FSF+  +  + Q + C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLAQQLGDDPMPVFSFLGSQDQHPQQMPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL +
Sbjct: 245 THTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I+G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+A+ +  L+     R  +Y+GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLLAGLNAAQYAFDLEGWFPRRDQAYMGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F   ++     R  LK + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDVRWAHFNNKVELIEKERQRLKDIW 484

Query: 483 LTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +  K+     I+        K     + L  P+   Q L S+   A         ++++I
Sbjct: 485 VHPKSEGHDEINQILSVPLSKEANGEDLLRRPEMDYQTLISLSRFAPGITDPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E +     E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIERQLRNENTLLPVDLDYKQVKGLSNEVMAKLNDHKPTSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGM 624


>gi|264676173|ref|YP_003276079.1| glucose inhibited division protein A [Comamonas testosteroni CNB-2]
 gi|262206685|gb|ACY30783.1| glucose inhibited division protein A [Comamonas testosteroni CNB-2]
          Length = 653

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/642 (45%), Positives = 396/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 1   MYPQEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 61  EVDALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 121 QQAVDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM ++
Sbjct: 181 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNR 240

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 241 AMHPRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKENH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 301 QIFLEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 361 KSSFETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEGPWMPRRDEAYLGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 421 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDARWDSFSRKRDAV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLF--------- 519
           +     LKS  +  + +++     +  K   +    ++ L  P      L          
Sbjct: 481 SRETERLKSTWVNPRVVAAEESERVLGKAMEREYNLFDLLRRPGVDYDKLMGMNQGKYAS 540

Query: 520 -SICPD-ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
             + P+   + S+ VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS
Sbjct: 541 ADVQPEALGELSAPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALS 600

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 601 FEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 642


>gi|329925075|ref|ZP_08280019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. HGF5]
 gi|328940194|gb|EGG36526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. HGF5]
          Length = 628

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 384/621 (61%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAA  +A++GA T ++T     +  M CNP+IGG  KGH+VRE
Sbjct: 4   MGGTYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHVVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M+  +  +E L + Q
Sbjct: 64  IDALGGEMGRNIDKTFIQMRMLNTGKGPAVYALRAQADKFSYQHTMKETMEKEEKLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E  +   IV Q  +  R   VVLTTGT+LRG + +G+L   +G     PS  
Sbjct: 124 GMVDQLIVEDGVCVGIVTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQPSVK 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R+   TI + KTE Q  DE    FS+ T    N Q+ C 
Sbjct: 184 LAHNLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDENPKFFSYETKSSDNEQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+++TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG N
Sbjct: 244 LTYTSVDTHKIINDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G+ST++PE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+P+LETKK+ 
Sbjct: 304 TKEYYVQGLSTSMPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKKLP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  
Sbjct: 364 GLFTAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVILDRSQGYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  +G I E R  +F    Q        L+  
Sbjct: 424 EPYRLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISEERYAKFLLKKQLVEQEIERLRQT 483

Query: 482 VLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            +        L +   +   DG        L  P+ +   + S+ P   +    + E+++
Sbjct: 484 KVKPVEVNAMLEAAGSAPIVDGSNML--TILRRPEITFAMVESLSPSPYELDEEMKEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q+   ++++  EK+ IP+D  Y  +  L+ E ++KL+ ++P ++ QAS+
Sbjct: 542 IQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDEINGLAMEARQKLNKIRPISIGQASR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPA +++LL+Y++    
Sbjct: 602 IAGVTPADISILLVYLEHYNR 622


>gi|253997705|ref|YP_003049769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylotenera mobilis JLW8]
 gi|253984384|gb|ACT49242.1| glucose inhibited division protein A [Methylotenera mobilis JLW8]
          Length = 639

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/621 (46%), Positives = 394/621 (63%), Gaps = 5/621 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQENLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +  + +V Q         VVLT GTFL G++H+G     AGR GD PS SL   
Sbjct: 127 DIILEGDRAAGVVTQIGLRFAAKAVVLTAGTFLGGLVHVGLQNYQAGRAGDPPSVSLAAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSF+ +   +  Q+ C IT 
Sbjct: 187 LREIGLPAGRLKTGTPPRIDGRTIDYSVMTIQPGDNPVPVFSFLGNAAQHPAQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGLATNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + GLF
Sbjct: 307 IYPNGISTSLPFDIQLALVRSVRGLENAHILRPGYAIEYDYYDPRGLKSSLETKAVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A  +   +  C +R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALYAQGKEAWCPARDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG KLG + + R + F++  +     +  LK   + 
Sbjct: 427 RMFTSRAEYRLQLREDNADMRLTEIGRKLGLVDDARWEAFSRKKEAIEREQERLKKTFVQ 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIERLQIES 540
             NLS+  +     K      + +E L  P  S + + S+      +    V E+++I +
Sbjct: 487 PANLSAEQMQAVFGKPLEHEYSLFELLRRPAVSYEAVLSLDASGLGELEPAVREQVEISA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ+ E    + +E  ++PKD DY  +  L  E ++KL+  KP  + QAS+I G
Sbjct: 547 KYQGYIDRQVEEVARSRGQENTILPKDLDYREIHGLPIEAQQKLNAHKPETIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLN 621
           +TPAA++LLL+Y+K+ +   +
Sbjct: 607 ITPAAISLLLVYLKRKSRAKS 627


>gi|259910326|ref|YP_002650682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia pyrifoliae Ep1/96]
 gi|224965948|emb|CAX57481.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme,
           Glucose-inhibited division protein A [Erwinia pyrifoliae
           Ep1/96]
 gi|283480449|emb|CAY76365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Erwinia pyrifoliae DSM 12163]
          Length = 629

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/618 (47%), Positives = 387/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +     Q  D  L  FSFM D   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARTIDFSLLAPQHGDNPLPVFSFMGDVRQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLMLREDNADLRLTAAGRELGLVDDARWARFNEKLESIEQERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVADVNSVISAALTKEASGEDLLRRPEMTYQQLMTLSHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E   +P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTALPVDLDYQQVSGLSNEAIAKLNESKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|190150986|ref|YP_001969511.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307264343|ref|ZP_07545931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|238692408|sp|B3H2Q2|MNMG_ACTP7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189916117|gb|ACE62369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870295|gb|EFN02051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 630

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/623 (47%), Positives = 387/623 (62%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IYHEIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ 
Sbjct: 62  EIDAMGGLMAIAIDQAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E N     V +     +  +VVLT GTFL G IHIG      GR GD  + 
Sbjct: 122 QQEVVDILVENNRAVGAVTKMRLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAAT 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L +     +    RLKTGTP RLD +TI +D   KQ  D  L   SFM    +  RQI 
Sbjct: 182 MLADRLRDLNLRIDRLKTGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEG
Sbjct: 242 CYITHTNEQTHDLIRNSLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK 
Sbjct: 302 LSTIEVYPNGISTSLPFDVQMGIVNSMKGLEKTRIIKPGYAIEYDYFDPRDLKPTLETKA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I + R  RF + ++        LK
Sbjct: 422 TKEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDDARWARFNQKMENIEREHERLK 481

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
            + +  ++        +      +  +  + L  P+ +   L  +   A         E+
Sbjct: 482 QIWIHPQSEHLAVVNELVNSPLTREASGEDLLRRPEVTYDKLTQVAAFAPALDDKQAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y   Q  E +  K  E  LIP +FDY  + +LSNE++ KL   +P ++ QA
Sbjct: 542 VEISIKYQGYIEHQQNEIERHKRHENTLIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA+++LL+ +KK  +
Sbjct: 602 SRISGITPAAISILLVNLKKQGM 624


>gi|187925874|ref|YP_001897516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia phytofirmans PsJN]
 gi|238691589|sp|B2T7L1|MNMG_BURPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187717068|gb|ACD18292.1| glucose inhibited division protein A [Burkholderia phytofirmans
           PsJN]
          Length = 652

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/631 (45%), Positives = 388/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GLF AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++
Sbjct: 362 VINGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQGKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDIRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           ++  +  K L    +T +  K      +  + L  P  S   +  +       P+A    
Sbjct: 482 RTTWVNPKTLPADEATPLLGKPIDHEYSLADLLRRPGVSYDGVCGLRAGACAAPEALAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+
Sbjct: 542 DVLLAQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGVDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|15642768|ref|NP_232401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147674621|ref|YP_001218410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae O395]
 gi|153820114|ref|ZP_01972781.1| glucose inhibited division protein A [Vibrio cholerae NCTC 8457]
 gi|153821973|ref|ZP_01974640.1| glucose inhibited division protein A [Vibrio cholerae B33]
 gi|227082887|ref|YP_002811438.1| glucose inhibited division protein A [Vibrio cholerae M66-2]
 gi|229508288|ref|ZP_04397792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae BX 330286]
 gi|229508640|ref|ZP_04398135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae B33]
 gi|229517144|ref|ZP_04406590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC9]
 gi|229520164|ref|ZP_04409591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TM 11079-80]
 gi|229606562|ref|YP_002877210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MJ-1236]
 gi|254291137|ref|ZP_04961934.1| glucose inhibited division protein A [Vibrio cholerae AM-19226]
 gi|254851566|ref|ZP_05240916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MO10]
 gi|255746815|ref|ZP_05420761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholera CIRS 101]
 gi|262155895|ref|ZP_06029017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae INDRE 91/1]
 gi|262167091|ref|ZP_06034806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC27]
 gi|298501187|ref|ZP_07010986.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MAK 757]
 gi|11386838|sp|Q9KNG4|MNMG_VIBCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|172047493|sp|A5F468|MNMG_VIBC3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811522|sp|C3LSK0|MNMG_VIBCM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9657377|gb|AAF95914.1| glucose inhibited division protein A [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126509345|gb|EAZ71939.1| glucose inhibited division protein A [Vibrio cholerae NCTC 8457]
 gi|126520512|gb|EAZ77735.1| glucose inhibited division protein A [Vibrio cholerae B33]
 gi|146316504|gb|ABQ21043.1| glucose inhibited division protein A [Vibrio cholerae O395]
 gi|150422982|gb|EDN14932.1| glucose inhibited division protein A [Vibrio cholerae AM-19226]
 gi|227010775|gb|ACP06987.1| glucose inhibited division protein A [Vibrio cholerae M66-2]
 gi|227011997|gb|ACP08207.1| glucose inhibited division protein A [Vibrio cholerae O395]
 gi|229342758|gb|EEO07749.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TM 11079-80]
 gi|229346207|gb|EEO11179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC9]
 gi|229354354|gb|EEO19282.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae B33]
 gi|229354561|gb|EEO19483.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae BX 330286]
 gi|229369217|gb|ACQ59640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MJ-1236]
 gi|254847271|gb|EET25685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MO10]
 gi|255735572|gb|EET90971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholera CIRS 101]
 gi|262024477|gb|EEY43163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae RC27]
 gi|262030347|gb|EEY48989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae INDRE 91/1]
 gi|297540059|gb|EFH76121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MAK 757]
          Length = 631

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 387/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|149182298|ref|ZP_01860777.1| glucose-inhibited division protein A [Bacillus sp. SG-1]
 gi|148849990|gb|EDL64161.1| glucose-inhibited division protein A [Bacillus sp. SG-1]
          Length = 629

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/619 (44%), Positives = 390/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIG GHAG EA   AA++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QFDVIVIGAGHAGVEAGLAAARMGAKTLMVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I  + N+ ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFAYQHEMKKTIEDEPNMTLLQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +    +V Q  +  R  TVV+TTGTFLRG I +G L+  +G     PS  L  
Sbjct: 127 ESLIIEDDECKGVVTQTGAEYRAKTVVITTGTFLRGEIILGDLRYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDMVRFKTGTPPRVNSKTIDYSKTEIQPGDDVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TNAETHQLIDDNLGRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGKNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLEK  ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQMKILATIPGLEKAQLMRAGYAIEYDSIVPTQLWPTLETKKIKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A ++   + +  +R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGINAACRALDKEEVILNRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG K+G I + R +RF          ++ L+++ L 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDIGHKIGLISDERYERFLTKKALVEEEKARLQTIRLK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG    A + L  P+ +  ++ ++ P     +  + E+++I+
Sbjct: 487 PNEETQNVIKEAGGSELKDGI--LASDILRRPEMNYSHIKALIPREEPLTEDIEEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + +  ++K  E + IP   DY ++  L++E ++KL  ++P +L QAS+I 
Sbjct: 545 IKYEGYIEKSLQQVDKMKKMENKKIPDFIDYDAINGLASEARQKLKEVRPLSLAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 605 GVNPADVSILLVYIEQGKI 623


>gi|229524904|ref|ZP_04414309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae bv. albensis VL426]
 gi|229338485|gb|EEO03502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae bv. albensis VL426]
          Length = 631

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/630 (44%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVDNDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++         +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFTPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|262402091|ref|ZP_06078655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC586]
 gi|262351737|gb|EEZ00869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC586]
          Length = 631

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/630 (45%), Positives = 384/630 (60%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLALF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +    RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREYHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +     + L  P+ + + L ++         S   E+
Sbjct: 482 DTWMNPNSVGVEQLNALLKTPMSREACGEDLLRRPEMTYELLTTLPAFVPVLEDSEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|261213272|ref|ZP_05927554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC341]
 gi|260837546|gb|EEX64249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio sp. RC341]
          Length = 631

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/630 (44%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVDNDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFSGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEG
Sbjct: 242 CYITHTNDRTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++         S   E+
Sbjct: 482 ETWMNPNSVGVEQLNALLKTPMSREASGEDLLRRPEMTYELLTTLPAYTPALEDSEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPIDLDYKQVKGLSNEVVLKLSTAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|21961160|gb|AAM87686.1|AE014015_11 glucose-inhibited division protein [Yersinia pestis KIM 10]
 gi|45438630|gb|AAS64176.1| glucose inhibited division protein A [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 656

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 396/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 33  QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 92

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM +  D AGIQFR+LN  KGPAVR  R QADR LYRLA++  + +Q NL + Q  V
Sbjct: 93  LGGLMAKATDLAGIQFRILNASKGPAVRATRAQADRVLYRLAVRTALENQPNLMIFQQPV 152

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 153 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 212

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 213 RLRELPLRVNRLKTGTPPRIDARTIDFSQLTPQLGDTPIPVFSFLGNAEQHPEQMACHIT 272

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 273 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 332

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 333 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 392

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ D     R ++Y+GV++DDL++ G  EP
Sbjct: 393 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANEEDGWSPRRDEAYLGVLVDDLSTLGTKEP 452

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++ +++    R  L+ + +
Sbjct: 453 YRMFTSRAEYRLMLREDNADLRLTETGRKLGLVDDIRWAHFSQKVEQIEKERQRLRDIWV 512

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              + + + I+        K     E L  P+   + L S+             ++++I+
Sbjct: 513 HPHSENVSEINALLKAPLSKEANGEELLRRPEIDYRLLTSLTSFGPALTDPQSADQVEIQ 572

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  L+P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 573 VKYEGYITRQQEEIEKQLRNENTLLPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRIS 632

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 633 GITPAAISILLVWLKKQGL 651


>gi|197286880|ref|YP_002152752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Proteus mirabilis HI4320]
 gi|238693206|sp|B4F0D8|MNMG_PROMH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|194684367|emb|CAR46005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Proteus
           mirabilis HI4320]
          Length = 632

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/622 (47%), Positives = 394/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTTLENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V +     R   VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENDQVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +   +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C I
Sbjct: 185 HRLRELPLRVGRLKTGTPPRIDARTIDFSQLAPQLGDNPMPVFSFLGNVDQHPEQMPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II  N++ S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 THTNEQTHEIIRNNLERSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F++ ++     R  L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDNRWAQFSEKVELVEKERQRLRDIW 484

Query: 483 LTSK--NLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
           +  K  NL   +   K    K     + L  P+ + + L  I    P          E++
Sbjct: 485 VHPKADNLEEINQLLKTPLSKEANGEDLLRRPEMTYEILKKIPRFAPGIDDSRPQAAEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 545 EIQVKYEGYINRQQEEIEKQLRNESAALPIDIDYKQVSGLSNEVIAKLNDHKPTSIGQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 605 RISGVTPAAISILLVWLKKQGL 626


>gi|91785745|ref|YP_560951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia xenovorans LB400]
 gi|123358350|sp|Q13SP0|MNMG_BURXL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91689699|gb|ABE32899.1| Glucose-inhibited division protein A subfamily [Burkholderia
           xenovorans LB400]
          Length = 652

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/631 (45%), Positives = 389/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  +A++G +T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALASARMGNTTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRGRAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+   +   RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRVEQHPRQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNARTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQINGTTGYEEAAAQGL+AGIN+       +  C  R  +Y+GV++DDL ++
Sbjct: 362 VISGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQGKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           ++  +  K L    +T++  K      +  + L  P  S   + ++       P+     
Sbjct: 482 RTTWVNPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGACAAPETLAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  +  E   +P+  DY+ +  LS E ++KL+
Sbjct: 542 DVLLAQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGLDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QFRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|221069725|ref|ZP_03545830.1| glucose inhibited division protein A [Comamonas testosteroni KF-1]
 gi|220714748|gb|EED70116.1| glucose inhibited division protein A [Comamonas testosteroni KF-1]
          Length = 654

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/642 (44%), Positives = 393/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM ++
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNR 241

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 242 AMHPRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 362 KSSFETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGESPWMPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDVRWDSFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------ 522
           +     LKS  +  + +++     +  K   +    ++ L  P      L  +       
Sbjct: 482 SRETERLKSTWVNPRVVAAEESERVLGKAMEREYNLFDLLRRPGVDYDKLMDMNQGKYAS 541

Query: 523 -----PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                    + S  VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS
Sbjct: 542 ADVQPEALGELSDPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 602 FEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|293391117|ref|ZP_06635451.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951651|gb|EFE01770.1| glucose-inhibited division protein A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 629

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/622 (47%), Positives = 389/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA    ++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGSEAALAPVRMGLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++  + +V +         V+LT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRATGVVTKMGLKFHAKAVILTAGTFLAGKIHIGLENYTGGRAGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L       +    RLKTGTP R+D +TI +D   KQ  D  L  FSFM     + Q I C
Sbjct: 183 LAQRLRDLNLRVDRLKTGTPPRIDARTINFDVLAKQHGDAVLPVFSFMGSVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHDVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFADRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +YPNGIST+LP ++Q   + ++ GLEK  I++PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEIYPNGISTSLPFDVQMGIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKPTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +Y+GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEVWFPRRDQAYVGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  KLG I E R  RF + I+     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHKLGLIDEARWARFNQKIENIELERQRLRS 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  +      +     + L  P+ + + L S+ P          +E++
Sbjct: 483 IWLHPRSEYLEEANKVLGSPLVREANGEDLLRRPEMNYEILTSLTPYQPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E ++ K  E   IP  FDY  +  LSNE++ KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQEEEIEKQKRHENTEIPTQFDYVKVSGLSNEVRAKLEQHRPVSIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++++L+ +KK  +
Sbjct: 603 RISGITPAAISIILVNLKKQGM 624


>gi|229515958|ref|ZP_04405415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TMA 21]
 gi|229347058|gb|EEO12020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae TMA 21]
          Length = 631

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/630 (44%), Positives = 385/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D  GIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHTGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ +   L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYDLLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|238759548|ref|ZP_04620710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia aldovae ATCC 35236]
 gi|238702207|gb|EEP94762.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Yersinia aldovae ATCC 35236]
          Length = 629

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 394/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMAMATDQAGIQFRILNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSQLAPQLGDTPIPVFSFLGNASQHPEQMACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKYIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N  D     R ++Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRFANDEDGWSPRRDEAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT +G KLG + + R   F++ I++    R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEMGRKLGLVNDARWAHFSQKIEKIEKERQRLRDIWV 485

Query: 484 TS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
                N+S  +   K    K     E L  P+   + L ++             ++++I+
Sbjct: 486 HPYSDNVSEINALLKAPLSKEANGEELLRRPEIDYRLLTTLPSFGPALTDPQAADQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYITRQQEEIEKQLRNENTVLPLDLDYRQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LL+++KK  +
Sbjct: 606 GITPAAISILLVWLKKQGL 624


>gi|126176558|ref|YP_001052707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS155]
 gi|166200611|sp|A3DAS5|MNMG_SHEB5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125999763|gb|ABN63838.1| glucose inhibited division protein A [Shewanella baltica OS155]
          Length = 629

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I             E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|56461730|ref|YP_157011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Idiomarina loihiensis L2TR]
 gi|81170548|sp|Q5QZI8|MNMG_IDILO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56180740|gb|AAV83462.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina loihiensis L2TR]
          Length = 631

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/621 (46%), Positives = 389/621 (62%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIV+GGGHAG EAA  AA+LG  T L+TH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 6   QQHFDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M + AD AGIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q 
Sbjct: 66  DALGGVMAKAADKAGIQFRTLNSSKGPAVRATRAQADRQLYKQAIRYALETQPNLSIFQQ 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E + ++ +V Q        TVVLT GTFL G IHIG      GR GD PSN+L
Sbjct: 126 GCDDLIVENDRVTGVVTQMGLKFTAKTVVLTVGTFLGGQIHIGLDNYQGGRAGDPPSNAL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECG 241
                       RLKTGTP R+   ++ +   ++Q  D     FS+M  +  + Q I C 
Sbjct: 186 AKRLRALPLRVERLKTGTPPRIASHSVDFSVMQEQPGDNPTPVFSYMGSRSDHPQQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLN
Sbjct: 246 ITHTNENTHEIIRSGLDRSPMYSGVIEGVGPRYCPSIEDKIVRFADKGSHQIFVEPEGLN 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK I+
Sbjct: 306 TFEIYPNGISTSLPFDVQQRLVQSIKGFENAHITRPGYAIEYDYFDPRDLKQSLETKVIN 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEA AQGL+AG+N+A ++   +     R  +Y+GV+IDDL++ G  
Sbjct: 366 GLFFAGQINGTTGYEEAGAQGLIAGLNAALQAQDKESWAPRRDQAYMGVLIDDLSTLGTQ 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F K ++     +  LK+ 
Sbjct: 426 EPYRMFTSRAEYRLLLREDNADMRLTEIGRNLGLVDDERWAAFNKKMESVEQEKQRLKTT 485

Query: 482 VLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQ 537
            +   + S   I+        K  +  E L  P+   ++L      A      L  E+++
Sbjct: 486 WVHKDHASVEQINALVKSPVTKEVSGEELLRRPEIHYKDLALTDFFAPGLEDPLAAEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E  + +  E  L+P  FDY+ +  LSNE+  KL+  +P  + +A++
Sbjct: 546 IQIKYAGYITRQQEEIAKQQRHENTLLPSPFDYAKIKGLSNEVVAKLNDHQPETVGKAAR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA+++LL+++KK  +
Sbjct: 606 ISGITPAAVSMLLVHLKKQGL 626


>gi|304412698|ref|ZP_07394301.1| glucose inhibited division protein A [Shewanella baltica OS183]
 gi|307305837|ref|ZP_07585583.1| glucose inhibited division protein A [Shewanella baltica BA175]
 gi|304348908|gb|EFM13323.1| glucose inhibited division protein A [Shewanella baltica OS183]
 gi|306911330|gb|EFN41756.1| glucose inhibited division protein A [Shewanella baltica BA175]
          Length = 629

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDTRWAAFSEKLESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I             E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|90415383|ref|ZP_01223317.1| Glucose-inhibited division protein A subfamily protein [marine
           gamma proteobacterium HTCC2207]
 gi|90332706|gb|EAS47876.1| Glucose-inhibited division protein A subfamily protein [marine
           gamma proteobacterium HTCC2207]
          Length = 622

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/618 (46%), Positives = 395/618 (63%), Gaps = 5/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EA   AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDA
Sbjct: 6   SFDVIVVGGGHAGTEACLAAARMGSKTLLLTHNIETLGQMSCNPAIGGIGKTHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A+   + +Q+NL + Q  V
Sbjct: 66  LGGAMAKATDLGGIQFRVLNSRKGPAVRATRAQADRVLYKAAILEILQNQQNLTLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++ +V Q     +  TVV+T GTFL G IHIG     AGR GD P+ +L  
Sbjct: 126 DDLILEGDSVTGVVTQMGLTFKAKTVVVTAGTFLAGKIHIGMENYSAGRAGDPPALNLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
                 F   RLKTGTP R+D +++ + +  +Q+ D+     S++     +  Q  C IT
Sbjct: 186 RLRSLPFRVERLKTGTPPRIDARSVDFSQLPEQWGDQPEPVMSYLGSVTQHPKQTCCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II   +  S +Y+G I   GPRYCPSIEDK+VRF ++N HQIF+EPEGLNT 
Sbjct: 246 YTNSQTHDIIKGGMDRSPLYTGVIDGVGPRYCPSIEDKVVRFADKNQHQIFIEPEGLNTY 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYDY NP++L  +LETK + GL
Sbjct: 306 ELYPNGISTSLPFDVQLSLVRSIVGFENAHITRPGYAIEYDYFNPQDLKYSLETKSVKGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++YIGV++DDL + G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGTNAALQVQGRESWCPRRDEAYIGVLVDDLITMGTTEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K+F+   +     R  LKS  +
Sbjct: 426 YRMFTSRAEYRLLLREDNADMRLTEKGRELGLVDDDRWKQFSDKREAIELERQRLKSTWI 485

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + ++  +S     +     + +E L  P+   + + S+ P+  +    + E+++I++
Sbjct: 486 QPTSDTAEKLSAHIENKLSHEYSLFELLKRPEIDYKIIGSLYPE-HQVEHKIAEQVEIDA 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  E   ++  E   IP +F+Y S+  LSNE+K+KLS   P  L +A +I G
Sbjct: 545 KYSGYIIRQQDEVNRLRRHENTRIPVNFNYQSVKGLSNEVKQKLSEATPETLARAGRIPG 604

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LL++ +KK+  
Sbjct: 605 VTPAAISLLIVQLKKHAA 622


>gi|332533707|ref|ZP_08409566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036871|gb|EGI73332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 629

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/623 (46%), Positives = 398/623 (63%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +Q+NL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQDNLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENYKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           +L     +  F   RLKTGTP R+D +T+ + K E Q  D     FSFM  +  + Q I 
Sbjct: 182 ALAERLREHPFRVDRLKTGTPPRIDARTVDFTKMEAQPGDMPTPVFSFMGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSISGFENAHICRPGYAIEYDYFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    D     R ++Y+GV+IDDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKDSWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEVIEKEKQRIK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
              +   ++      ++      +  +  E L  P+    +L +I     +F++   +E+
Sbjct: 482 DTWIHKDHVVVDQVNALLKTPLTREASLEELLRRPEIRYNDLMAIDGLGSEFTNVAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEQTILPKEFDYKTVSGLSNEVVAKLIESRPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LLL+Y+KK  +
Sbjct: 602 SRISGITPAAISLLLVYLKKQGL 624


>gi|326564668|gb|EGE14886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 46P47B1]
          Length = 632

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/626 (47%), Positives = 396/626 (63%), Gaps = 8/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIHLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKV--SDSTVSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+TPAA++LL + IKK  +K  + V+
Sbjct: 608 GVTPAAVSLLAMTIKK--LKKTQAVM 631


>gi|116053716|ref|YP_794043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894668|ref|YP_002443538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa LESB58]
 gi|254237761|ref|ZP_04931084.1| glucose-inhibited division protein A [Pseudomonas aeruginosa C3719]
 gi|254243110|ref|ZP_04936432.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 2192]
 gi|122256264|sp|Q02DE3|MNMG_PSEAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704796|sp|B7V7A2|MNMG_PSEA8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115588937|gb|ABJ14952.1| glucose-inhibited division protein A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169692|gb|EAZ55203.1| glucose-inhibited division protein A [Pseudomonas aeruginosa C3719]
 gi|126196488|gb|EAZ60551.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 2192]
 gi|218774897|emb|CAW30715.1| glucose-inhibited division protein A [Pseudomonas aeruginosa
           LESB58]
          Length = 630

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/616 (47%), Positives = 382/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +              LS P+     L  I  DA   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNT 617
           TPAA++LLLI++KK  
Sbjct: 606 TPAAISLLLIHLKKRA 621


>gi|121730055|ref|ZP_01682464.1| glucose inhibited division protein A [Vibrio cholerae V52]
 gi|121628204|gb|EAX60727.1| glucose inhibited division protein A [Vibrio cholerae V52]
          Length = 631

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  +   + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVCNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|327485243|gb|AEA79650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae LMA3894-4]
          Length = 631

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 387/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ + + L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|326559567|gb|EGE09981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 7169]
          Length = 632

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/626 (47%), Positives = 396/626 (63%), Gaps = 8/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMVNTGEILTKENSLLDLLKRPNITFDDIAKV--SDSTVSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+TPAA++LL + IKK  +K  + V+
Sbjct: 608 GVTPAAVSLLAMTIKK--LKKTQAVM 631


>gi|217975459|ref|YP_002360210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS223]
 gi|254811519|sp|B8EDW1|MNMG_SHEB2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|217500594|gb|ACK48787.1| glucose inhibited division protein A [Shewanella baltica OS223]
          Length = 629

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I             E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|192359013|ref|YP_001984271.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Cellvibrio japonicus Ueda107]
 gi|238692448|sp|B3PIT8|MNMG_CELJU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|190685178|gb|ACE82856.1| glucose-inhibited division protein A [Cellvibrio japonicus Ueda107]
          Length = 638

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/617 (46%), Positives = 396/617 (64%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA   AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEACLAAARMGCKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMALATDKGGIQFRVLNARKGPAVRATRAQADRILYKAAIRHTLENQPNLWIFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLT GTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLKFMADQVVLTAGTFLGGLIHIGLENYSGGRAGDPPSIALSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
             +      RLKTGTP R+D +T+ +D  EKQ+ DE     S   ++ +   QI C IT 
Sbjct: 187 LRELPLRVDRLKTGTPPRIDARTVNFDLLEKQWGDEPRPVMSVRGNRAMQPPQICCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 247 TNERTHEVIRNNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ NP++L  +LET+ I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSMRGFENAHILRPGYAIEYDFFNPQDLQHSLETRVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN+A ++      C +R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINAALRAQGKAAWCPTRDQAYMGVLVDDLITLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG IG+ + + F +  ++    +  LKS  + 
Sbjct: 427 RMFTSRAEYRLLLREDNADLRLTEKGRELGLIGDEQWQLFCEKREQIALEQQRLKSTWIQ 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + +  +  I  K   +  +  +  + L  P+ +  ++ S+  +         E+++IE+ 
Sbjct: 487 AGSAEAEQIEAKINVRLAREYSLMDLLKRPELNYADVASLKGEPLA-GEAAAEQVEIEAK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   ++  E  LIP+D DY+ +  LSNE+K+KLS  +P  L +A++I G+
Sbjct: 546 YAGYIDRQQDDINRLRAYENTLIPEDLDYAQVEGLSNEVKQKLSAARPQTLARAARISGI 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++L+L+Y+KK  +
Sbjct: 606 TPAAISLVLVYLKKRGL 622


>gi|296392432|ref|ZP_06881907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PAb1]
          Length = 630

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/616 (47%), Positives = 382/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFVAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +              LS P+     L  I  DA   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNT 617
           TPAA++LLLI++KK  
Sbjct: 606 TPAAISLLLIHLKKRA 621


>gi|113461841|ref|YP_719910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus somnus 129PT]
 gi|123327492|sp|Q0I5W4|MNMG_HAES1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|112823884|gb|ABI25973.1| glucose-inhibited division protein A [Haemophilus somnus 129PT]
          Length = 629

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++   T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTENYDVIVIGGGHAGTEAALATARMKLKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR  ++  + +Q NLD+ Q
Sbjct: 63  IDAMGGLMATAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQVVRIALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     EK+ ++ I  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEVTDIILEKDSVTGIETKMGLKFRAKSVVLTAGTFLAGKIHIGLENYAGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L       +    RLKTGTP R+D +TI +D   KQ+ DE+L  FSFM     +  QI C
Sbjct: 183 LAKKLRDLNLRVNRLKTGTPPRIDARTINFDILAKQYGDEKLPVFSFMGSVEQHPEQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNDQTHDVIRKNLDRSPMYTGVIEGIGPRYCPSIEDKVIRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q + + ++ GLEK  I++PGYAIEYDY +P++L  TLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMKIVNSMKGLEKARIVKPGYAIEYDYFDPRDLKSTLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  +YIGV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKESWFPRRDQAYIGVLVDDLCTVGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLT I  KLG I + R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTSIARKLGLIDDIRWARFNQKMENIELERQRLRS 482

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           + L  ++     +  I      +     + L  P+ + Q L ++ P          +E++
Sbjct: 483 IWLHPRSEYLNEANEILKSPLIREVNGEDLLRRPEINYQILTALTPFKPAMEDKEAVEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y   Q  E +  K  E   IP +FDY ++  LSNE+  KL   +P ++ QAS
Sbjct: 543 EIAIKYQGYIEHQQEEIERQKRHENTAIPANFDYKNISGLSNEVCAKLEQYRPISIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+ +KK  +
Sbjct: 603 RISGITPAAISILLVNLKKQGM 624


>gi|153803600|ref|ZP_01958186.1| glucose inhibited division protein A [Vibrio cholerae MZO-3]
 gi|124120865|gb|EAY39608.1| glucose inhibited division protein A [Vibrio cholerae MZO-3]
          Length = 631

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 386/630 (61%), Gaps = 6/630 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQMQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKY 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G
Sbjct: 362 IHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWVRFNQKIDNMAKERQRLQ 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
              +   ++    ++        +  +  + L  P+ +   L ++   A     +   E+
Sbjct: 482 ETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYDLLTTLPAFAPALEDAEAAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  RQ  E ++    E   +P + DY  +  LSNE+  KL+  KP  +  A
Sbjct: 542 VEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+TPAA+++LL+++KK+ + K  E  
Sbjct: 602 SRISGITPAAISILLVHLKKHGMLKKGEAA 631


>gi|170729227|ref|YP_001763253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella woodyi ATCC 51908]
 gi|205831557|sp|B1KQ45|MNMG_SHEWM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169814574|gb|ACA89158.1| glucose inhibited division protein A [Shewanella woodyi ATCC 51908]
          Length = 630

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 385/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVIGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQEILQNQPNLRLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V Q         VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLIVENGRVTGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGMQNYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +     GRLKTGTP R+D  TI +D   +Q  D  L   SF+ D   +  QI C
Sbjct: 183 LADRLRELPIRIGRLKTGTPPRIDANTINFDLMTEQKGDTPLPVMSFIGDVSQHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 FVTHTNEKTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEIWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  +F++  +        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGREIGLVDDERWAKFSEKRESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++ +      +  +  + L  P+     L S+             E++
Sbjct: 483 QWVHPNSPLIDVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPGLDDPRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIRHETTGLPLDLDYQEVPGLSNEVIAKLNDHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++K+  +
Sbjct: 603 RISGMTPAAISILLVHLKRRGL 624


>gi|153002872|ref|YP_001368553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS185]
 gi|166200612|sp|A6WUK1|MNMG_SHEB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151367490|gb|ABS10490.1| glucose inhibited division protein A [Shewanella baltica OS185]
          Length = 629

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAEFSEKLESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I             E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|113972263|ref|YP_736056.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. MR-4]
 gi|114049512|ref|YP_740062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. MR-7]
 gi|123129966|sp|Q0HD68|MNMG_SHESM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123325561|sp|Q0HPF0|MNMG_SHESR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113886947|gb|ABI40999.1| glucose inhibited division protein A [Shewanella sp. MR-4]
 gi|113890954|gb|ABI45005.1| glucose inhibited division protein A [Shewanella sp. MR-7]
          Length = 629

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 385/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  ++ Q         VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLVVENDRVVGVITQMGLAFEAPAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LAHRLRELPIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIQGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N+A +    +  C  R ++YIGV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNAALQVQGKEAWCPRRDEAYIGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWASFSEKLESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++        +  +  E L  P+     L  I          L  E++
Sbjct: 483 QWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLADPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|239828706|ref|YP_002951330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacillus sp. WCH70]
 gi|239808999|gb|ACS26064.1| glucose inhibited division protein A [Geobacillus sp. WCH70]
          Length = 629

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALAAARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMAKNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V Q  +     TVV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVVTQTGAHYYAKTVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTPETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRQLLTTIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A ++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIIAGINAAHRAFGKEEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    +     +  LKS ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYKIGLISEERYQKFLAKKEAIEREKKRLKSYIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PTKEVQDVIRQAGGSELKDGIR--AADLLRRPEMTYEHIKQLAPAEEEISPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQQVERLKKMENKKIPEDIDYDAIHGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|167629164|ref|YP_001679663.1| glucose-inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
 gi|205831517|sp|B0TAB5|MNMG_HELMI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167591904|gb|ABZ83652.1| glucose-inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
          Length = 637

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/621 (45%), Positives = 387/621 (62%), Gaps = 7/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  +A+LGA T ++T     +  M CNPAIGG  KGHLVREIDA
Sbjct: 8   KYDVIVIGAGHAGCEAALASARLGAKTLILTISWDNVALMPCNPAIGGPAKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M R +  QENLDV Q  V
Sbjct: 68  LGGQMGLTIDKTCIQIRLLNTGKGPAVHALRAQADKKRYQREMIRVLEHQENLDVRQAMV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  I     +      +V+TTGT+LRG I IG L  P G  G  PS +L  
Sbjct: 128 ESVVVEQGRVRGIRTNTGAFFAAPALVITTGTYLRGRIIIGDLHYPGGPNGYFPSVALAA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S        GR KTGTPAR+DG+T+ + +  +Q  D   + FSF++ +I  +QI C +T 
Sbjct: 188 SLRDIGVRLGRFKTGTPARVDGRTVDFSQMVEQPGDREPLNFSFLSPRIERKQISCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+II +N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T  
Sbjct: 248 TTEETHQIIRDNLHRSPLYAGVIEGTGPRYCPSIEDKVVRFADKKSHQVFIEPEGEGTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q   +R+I G++ V IIRPGYAIEYDY++P +L  +LE ++I GLF
Sbjct: 308 MYVQGMSTSLPEDVQVTMLRSIIGMKDVKIIRPGYAIEYDYVDPTQLRLSLEHQEIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+AR     + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAAQGLMAGINAARFVKGEEPLVLKRSDAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + +RR +RF + +Q         KS  +T
Sbjct: 428 RMLTSRAEYRLLLRQDNADQRLTEIGRSIGLVDDRRYRRFREKMQLLEQEVVRWKSSFVT 487

Query: 485 SKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERLQ 537
             N    +I  ++      K  + Y+ L  P+ +  +L  +C D  K       V E+++
Sbjct: 488 PGNKKIQAILDEKKSAPLTKGVSLYDLLRRPELTYDDLIPLCNDGEKDLPIDPEVAEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + +  Y  +Q  +       E + +P D DY  +  LSNE ++KL   KP ++ QAS+
Sbjct: 548 ISAKFEGYLVKQQAQVDRFNKLENKRLPADLDYKRVHGLSNEGRQKLIARKPVSIGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G++PA +++LL+Y+++   
Sbjct: 608 ISGVSPADISILLVYLEQQRR 628


>gi|160877619|ref|YP_001556935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella baltica OS195]
 gi|189039356|sp|A9KX17|MNMG_SHEB9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160863141|gb|ABX51675.1| glucose inhibited division protein A [Shewanella baltica OS195]
 gi|315269817|gb|ADT96670.1| glucose inhibited division protein A [Shewanella baltica OS678]
          Length = 629

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 383/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         VVLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENHQVVGVVTQMGLAFESPAVVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTSEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDARWAAFSEKLESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I             E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLTLDYKEVPGLSNEVIAKLNNHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|152984868|ref|YP_001351678.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PA7]
 gi|166222720|sp|A6VF43|MNMG_PSEA7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150960026|gb|ABR82051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PA7]
          Length = 631

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/616 (47%), Positives = 384/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 128 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++++    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVVFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +              LS P+    +L  I  DA   +  V E+++I + 
Sbjct: 488 PNTPQGEAIAERFGTPLTHEYNLLNLLSRPEIDYASLVEITGDAVD-NPQVAEQVEIRTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 547 YAGYIDRQQEEIARLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           TPAA++LLLI++KK  
Sbjct: 607 TPAAISLLLIHLKKRA 622


>gi|326314883|ref|YP_004232555.1| glucose inhibited division protein A [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371719|gb|ADX43988.1| glucose inhibited division protein A [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 655

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/642 (45%), Positives = 394/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTD- 231
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM + 
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGTLPVFSFMGNT 241

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ H
Sbjct: 242 AMHPRQVPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP ++Q+  +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDVQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV+
Sbjct: 362 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGESAWLPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
                 LKS  +  +NL    S  +  K        ++ L  PD + + L  +       
Sbjct: 482 ARETERLKSTWVNPRNLPAEESARVLGKSIEHEYNLFDLLRRPDVTYEALTGMDGGKYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                    + S+ VIE+++I + YA Y  RQ  E +     E   +P++ DY  + ALS
Sbjct: 542 TAVSRETLGELSAPVIEQVEIAAKYAGYIDRQKDEVQRASHYENLQLPQELDYMQVAALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   +
Sbjct: 602 IEVRQKLQKHRPETLGQASRISGVTPAAVSLLLVHLKKGGFR 643


>gi|310765906|gb|ADP10856.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erwinia sp. Ejp617]
          Length = 629

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/618 (47%), Positives = 386/618 (62%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG   D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMGHAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +     Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLLVENDRVVGAATQMGLKFRAKAVVLTVGTFLDGKIHIGMDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D ++I +     Q  D  L  FSFM D   + Q + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDARSIDFSLLAPQHGDNPLPVFSFMGDVRQHPQQVPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 247 TNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 307 IYPNGISTSLPFDVQMQIVRSMHGMENAKIVRPGYAIEYDFFDPRDLKPTLESKYIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+ R S   +     R  +Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAGRLSADKESWAPRRDQAYLGVLVDDLCTLGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF + ++     R  L+ + + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTAAGRELGLVDDARWARFNEKLESIERERQRLRDIWVH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIES 540
            K+       S+      K  +  + L  P+ + Q L ++         +   E+++I+ 
Sbjct: 487 PKSECVADVNSVISAALTKEASGEDLLRRPEMTYQQLMTLSHFAPALADAQAAEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E       E   +P D DY  +  LSNE   KL+  KP ++ QAS+I G
Sbjct: 547 KYEGYIARQQEEIDRQLRNENTALPVDLDYQQVSGLSNEAIAKLNESKPGSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA+++LLIY+KK  +
Sbjct: 607 ITPAAISILLIYLKKQGL 624


>gi|150019906|ref|YP_001312160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium beijerinckii NCIMB 8052]
 gi|205831523|sp|A6M3M4|MNMG_CLOB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149906371|gb|ABR37204.1| glucose inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
          Length = 626

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/618 (45%), Positives = 399/618 (64%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D++V+G GHAGCEAA  +A+LG +T + T    +I  M CNP IGG  KGHLVREIDA
Sbjct: 9   QFDIVVVGAGHAGCEAALASARLGLNTLVCTINLDSIALMPCNPNIGGTAKGHLVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV
Sbjct: 69  LGGEMGINIDNTFIQSRMLNTSKGPAVHSLRAQADKKSYQFRMKRILEEQENLKIRQIEV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N E   ++ +V ++ ++ +C  V+L TGT+L+G I IG++    G  G  P+N L  
Sbjct: 129 TELNVENGKVTGVVTKNGAIFKCKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQ 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ +++ + K  +Q  D+ +IPFSFM++ I   Q+ C +T 
Sbjct: 189 SLLDLGVSLRRFKTGTPARINRRSVDFSKMIEQNGDDNIIPFSFMSENIEREQVSCYLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ET +II +NI  S IY+G IK  GPRYCPSIEDKI+RF ++  HQIF+EPEGL+T  
Sbjct: 249 TNDETRKIIRDNIGRSPIYNGSIKGVGPRYCPSIEDKIMRFPDKPQHQIFIEPEGLDTLE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G S++LPEE+Q + ++T+PGLE V ++R  YAIEYD I+P +L PTLE K I GL+
Sbjct: 309 MYVGGFSSSLPEEVQIKMLKTLPGLENVEMMRTAYAIEYDSIDPTQLKPTLEFKDIEGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA AQGL+AGIN+A K  + + +  +R+D+YIGV+IDDL +KG  EPY
Sbjct: 369 GAGQLNGSSGYEEAGAQGLIAGINAALKIKEKEPLILTRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G + E R  +F K  Q        LK+L +T
Sbjct: 429 RMMTSRAEYRLLLRQDNADFRLTNLGYRVGLVTEERYDKFIKRKQNIENELERLKNLKVT 488

Query: 485 S-KNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + K ++   IS    +  K  T YE L  P+    +L  I  +  +    V E++ I + 
Sbjct: 489 NKKEINEFLISLNSAELRKPITFYELLQRPELDYFDLKQIDSERPELPHDVGEQINILTK 548

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+L+PKD +YS +  L  E  +KLS ++P ++ QA++I G+
Sbjct: 549 YEGYIQSQLEQVAQFKKFEKKLLPKDINYSDIKGLRTEAIQKLSDIRPISIGQATRISGV 608

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY++    K
Sbjct: 609 SPADISVLLIYLEHYYNK 626


>gi|308175808|ref|YP_003922513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens DSM 7]
 gi|307608672|emb|CBI45043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555784|gb|AEB26276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus amyloliquefaciens TA208]
 gi|328914173|gb|AEB65769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus amyloliquefaciens LL3]
          Length = 628

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/619 (43%), Positives = 379/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +    NL ++QG  
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKHTLEKTPNLTLLQGIA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +  +  TVVLTTGT+LRG I +G L   +G     PS  L  
Sbjct: 127 ERLIIEDGECRGVITQTGAEYKAKTVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   +I + KTE Q  D     FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVSSDSIDYSKTEIQPGDPVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIPNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R + F K        +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYEAFEKKKAAIEAEKKRLWSVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+
Sbjct: 487 PSPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPADSPVPQDVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|296113565|ref|YP_003627503.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis RH4]
 gi|295921259|gb|ADG61610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis RH4]
 gi|326565484|gb|EGE15655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 12P80B1]
 gi|326567753|gb|EGE17859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC1]
 gi|326568611|gb|EGE18682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC7]
 gi|326572605|gb|EGE22594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis CO72]
          Length = 632

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/626 (47%), Positives = 396/626 (63%), Gaps = 8/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKV--SDSTVSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+TPAA++LL + IKK  +K  + V+
Sbjct: 608 GVTPAAVSLLAMTIKK--LKKTQAVM 631


>gi|33151283|ref|NP_872636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus ducreyi 35000HP]
 gi|71152072|sp|Q7VPP9|MNMG_HAEDU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33147503|gb|AAP95025.1| glucose inhibited division protein A [Haemophilus ducreyi 35000HP]
          Length = 630

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/626 (47%), Positives = 392/626 (62%), Gaps = 6/626 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR +++  + +Q+NL + Q E
Sbjct: 65  AMGGLMAIATDHAGIQFRTLNSSKGPAVRATRAQADRVLYRQSVRTALENQQNLAIFQQE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E +  S +V +     +  TV+LT GTFL G IHIG      GR GD  +  L 
Sbjct: 125 VVDILVENHRASGVVTKMGLTFKAKTVILTAGTFLAGKIHIGLDNYAGGRAGDPAATRLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
                 +    RLKTGTP RLD +TI ++   KQ  DE L   SFM +   + RQI C I
Sbjct: 185 ERLRDLNLRVDRLKTGTPPRLDARTINFEVLAKQPGDEVLPVMSFMGEVGQHPRQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II  N+  S +Y+G I+  GPRYCPSIEDK++RFG+RNGHQI+LEPEGL T
Sbjct: 245 THTNHQTHDIIRANLDRSPMYTGIIEGIGPRYCPSIEDKVMRFGDRNGHQIYLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q   + ++ GLE   II+ GYAIEYDY +P++L PTLETK I G
Sbjct: 305 IEVYPNGISTSLPFDVQMAIVNSMKGLENTRIIKAGYAIEYDYFDPRDLKPTLETKAIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+A +         +R  +Y GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGINAALQVQAKPSWFPTRDVAYTGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R +RF + ++     R  LK + 
Sbjct: 425 PYRVFTSRAEYRLLLREDNADIRLTPIAHQLGLIDEARWQRFNQKMENIERERERLKQIW 484

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQI 538
           +  ++    +   +      +     + L  P+ +   L  I   A         E+++I
Sbjct: 485 IHPQSAYVDAVNQLVNSPLTREVNGEDLLRRPEINYAKLTEIAAFAPALDDRQAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y   Q  E +  K  E  LIP +FDY+ + +LSNE++ KL   +P ++ QAS+I
Sbjct: 545 AIKYQGYIEHQYNEIERHKRHENTLIPAEFDYNKVDSLSNEVRAKLMQHRPISIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV-KLNEI 623
            G+TPAA+++LL+ +KK  + K  EI
Sbjct: 605 SGITPAAISILLVNLKKQGMLKRGEI 630


>gi|290473125|ref|YP_003465986.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus bovienii SS-2004]
 gi|289172419|emb|CBJ79186.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus bovienii SS-2004]
          Length = 629

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/620 (46%), Positives = 396/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMAQATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQSNLMIFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N I+ +V +     +  +VVLT GTFL G IHIG      GR GD P+ +L 
Sbjct: 125 VEDLIVENNTITGVVTRMGLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIALS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
           +   +      RLKTGTP R+D +TI + + E+Q  D     FSFM +   + RQI C I
Sbjct: 185 HRLRELPLRVARLKTGTPPRIDARTIDFSQLEQQLGDNPTPVFSFMGNVDQHPRQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 THTNEKTHEVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I+G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYAADENGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + ++R + + + ++     R  L+++ 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDQRWEHYCRKVEMIEQERQRLRNIW 484

Query: 483 LTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +   + S   I+        K     + L  P+ + + L S+             ++++I
Sbjct: 485 VHPHSDSLDEINQMLKAPLSKEANGEDLLRRPEMNYELLTSLPRFTPGLTEPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIEKQLRNENAALPLDLDYKQVNGLSNEVIAKLNDHKPSSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGL 624


>gi|315128180|ref|YP_004070183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas sp. SM9913]
 gi|315016693|gb|ADT70031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas sp. SM9913]
          Length = 629

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/623 (46%), Positives = 397/623 (63%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQNTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E N ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENNRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENFKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           +L +   +  F   RLKTGTP R+D +T+ + K ++Q  D     FSFM  +  + Q I 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSKMQEQPGDAPTPVFSFMGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSITGFENAHICRPGYAIEYDFFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A +    +     R ++Y+GV+IDDL + G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLIAGMNAALQVQGKESWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEVIAKEKQRIK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-ER 535
              +   +        +      +  +  E L  P+    +L +I     +F++    E+
Sbjct: 482 DTWIHKDHAVVDQVNELLKTPLVREASLEELLRRPEVRYNDLMAIEGLGSEFTNKAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEETILPKEFDYKTVSGLSNEVVAKLIDARPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LLL+Y+KK  +
Sbjct: 602 SRISGITPAAISLLLVYLKKQGL 624


>gi|331007814|ref|ZP_08330919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC1989]
 gi|330418381|gb|EGG92942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC1989]
          Length = 637

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/628 (45%), Positives = 402/628 (64%), Gaps = 11/628 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVIVIGGGHAG EA   AA++G ST L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   YSHHYDVIVIGGGHAGTEACLAAARMGCSTLLLTHNIETLGQMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G M +  D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +QENL + Q
Sbjct: 63  IDAMGGAMAQATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAVREILENQENLQIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q       ++VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QSVDDLIIEGDTVKGVVTQMGLKFYGTSVVLTAGTFLGGKIHIGLENHSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +F     RLKTGTP R+D K++ + + ++Q+ D  L   S+M +   +  Q+ C
Sbjct: 183 LADRLREFPLRVDRLKTGTPPRIDAKSVDFSQLQEQWGDTPLPVMSYMGNVADHPEQVCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +Y+G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL
Sbjct: 243 WITYTNQKTHDIIRSGMDRSPMYTGVIEGVGPRYCPSIEDKVSRFADKDSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I G E  +I+RPGYAIEYDY NP++L  +LET+ I
Sbjct: 303 KTHELYPNGISTSLPFDVQLELVRSINGFENAHIMRPGYAIEYDYFNPQDLRSSLETRCI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N+  ++   +  C  R  +YIGVM+DDL + G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGLNAGLRAQDKESWCPRRDQAYIGVMVDDLITLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD+RLT    +LG I + R + F +  +        LK+
Sbjct: 423 QEPYRMFTSRAEHRLLLREDNADSRLTEKARELGLIDDMRWQAFNEKKESIAKEEQRLKT 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SS 530
             + + +  + ++  K      +     E L  P+ +  +L  +     +F         
Sbjct: 483 TFVQANSDQANALVEKIKTPLTREYNLMELLKRPELTYADLGELFFKDSEFADSHVKIDP 542

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V ++++I + Y+ Y  RQ  E K ++  E+  +P DFDYS++  LSNE K+KL  +KP 
Sbjct: 543 QVSQQIEISAKYSGYIQRQEEEVKRLRQHEETPLPIDFDYSTVEGLSNEAKQKLMTMKPE 602

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +L +AS+I+G+TPAA++LLL+Y+KK  +
Sbjct: 603 SLGRASRIQGITPAAISLLLVYLKKRGL 630


>gi|319428565|gb|ADV56639.1| glucose inhibited division protein A [Shewanella putrefaciens 200]
          Length = 629

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 386/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENDRVVGVVTQMGLAFESPAIVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGL+AG+N++ +    D  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAAAQGLLAGMNASLQVQGKDAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L++
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDTRWAAFSEKLESIELELQRLRA 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I          L  E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLHLDYKEVPGLSNEVIAKLNSHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGVTPAAISILLVHLKKRGL 624


>gi|77361915|ref|YP_341490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123589145|sp|Q3IK39|MNMG_PSEHT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76876826|emb|CAI88048.1| tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding
           domain [Pseudoalteromonas haloplanktis TAC125]
          Length = 629

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/623 (45%), Positives = 398/623 (63%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +Q+NL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQDNLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENFKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           +L +   +  F   RLKTGTP R+D +T+ + K ++Q  D  +  FSFM     + Q I 
Sbjct: 182 ALADRLRELPFRVDRLKTGTPPRIDARTVDFSKMQEQAGDTPIPVFSFMGKPSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +Y G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITFTNEKTHDVIRKNLHRSPMYGGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYD+ +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQIEIVQSITGFENAHICRPGYAIEYDFFDPRDLKRSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    +     R ++Y+GV+IDDLT+ G
Sbjct: 362 IDGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKESWTPRRDEAYVGVLIDDLTTLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + + + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAYNEKMEVIAKEKQRIK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-ER 535
              +   +       ++      +  +  E L  P+    +L +I     +F++    E+
Sbjct: 482 DTWIHKDHTMIDQVNALLKTPLTREASLEELLRRPEIRYNDLMAIDGLGSEFTNQAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIVRQQDEINKQLRHEQTILPKEFDYKTVSGLSNEVVAKLIDARPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LLL+Y+KK  +
Sbjct: 602 SRISGITPAAISLLLVYLKKQGL 624


>gi|288554600|ref|YP_003426535.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pseudofirmus OF4]
 gi|288545760|gb|ADC49643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus pseudofirmus OF4]
          Length = 628

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/618 (44%), Positives = 392/618 (63%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAG EA   +A++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   DFDVIVVGAGHAGVEAGLASARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  QENL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEQENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R ++VV+TTGT+LRG I +G+L   +G     PS  L  
Sbjct: 127 ERLIIEDGECRGVITNTGAEYRSTSVVITTGTYLRGKIILGELAYESGPNNMQPSVQLSY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R++G TI +DKTE Q  D+    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFDMVRFKTGTPPRVNGNTIDYDKTEIQPGDDTPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+II  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TGEETHQIINNNLSRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRNTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + +++IPGLE+V ++RPGYAIEYD I P +L+PTLETKK+ GLF
Sbjct: 307 VYVQGLSTSLPEDVQLKILKSIPGLEQVRMMRPGYAIEYDSIVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK+   +C+   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKAKGEECLILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G ++G I E R  RF     E    +  L+ +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEKGYEMGLISEDRFNRFELKKAEIAAEKKRLEKIIIK 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
             +  +  +         +  +A   L  P+ +  ++  +      + S  V E+++I+ 
Sbjct: 487 PSDEVAAVLQEAGATPLKEAVSAAMLLKRPELTYAHVSKLIEAPESEISDDVGEQVEIQV 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ +    K  E + IP+D DY ++  L+ E K+KLS ++P ++ QAS++ G
Sbjct: 547 KYEGYIEKQLQQVDRSKKMESKKIPEDLDYHAINGLATEAKQKLSEVRPLSVGQASRVSG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+Y+++  +
Sbjct: 607 VNPADISILLVYLEQGRL 624


>gi|167854772|ref|ZP_02477550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis 29755]
 gi|167854070|gb|EDS25306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis 29755]
          Length = 630

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/624 (47%), Positives = 387/624 (62%), Gaps = 6/624 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI R  YDVIV+GGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MIYREIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDA+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+
Sbjct: 61  KEIDAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q EV     E N     V +     +   V+LT GTFL G IHIG      GR GD  +
Sbjct: 121 FQQEVVDILVENNRAVGAVTKMGLAFKAKAVILTAGTFLAGKIHIGLDNYAGGRAGDPAA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQI 238
             L +     +    RLKTGTP RLD +TI +D   KQ  DE L   SFM   +   RQI
Sbjct: 181 TMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDEVLPVMSFMGSVEQHPRQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  ++  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPE
Sbjct: 241 PCYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T  VYPNGIST+LP ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK
Sbjct: 301 GLTTIEVYPNGISTSLPFDVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AGIN+  +    D    +R  +Y GV++DDL + 
Sbjct: 361 AIDGLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWFPTRDLAYTGVLVDDLCTL 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLTPI  + G I E R  RF + ++     ++ L
Sbjct: 421 GTKEPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWARFNEKMENIEKEKARL 480

Query: 479 KSLVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K      +  +   ++   +    +  +  + +  P+ + + L  I P A         E
Sbjct: 481 KQTWAHLQMANLAEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y   Q  E +  K  E   IP +FDY  + +LSNE++ KL   +P ++ Q
Sbjct: 541 QVEISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+ +KK  +
Sbjct: 601 ASRISGITPAAISILLVNLKKQGM 624


>gi|154688206|ref|YP_001423367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus amyloliquefaciens FZB42]
 gi|166222906|sp|A7ZAW0|MNMG_BACA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154354057|gb|ABS76136.1| GidA [Bacillus amyloliquefaciens FZB42]
          Length = 628

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/619 (43%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +    NL ++QG  
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKHTLEKTPNLTLLQGIA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +  +  TVVLTTGT+LRG I +G L   +G     PS  L  
Sbjct: 127 ERLIIEDGECRGVITQTGAEYKAKTVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   +I + KTE Q  D     FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVSSDSIDYSKTEIQPGDPVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKI  L+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLATIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKIPNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG  +G I + R + F K        +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISDERYEAFEKKKAAIEAEKKRLWSVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+
Sbjct: 487 PSPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPADSPVPQDVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|289551830|ref|YP_003472734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus lugdunensis HKU09-01]
 gi|289181361|gb|ADC88606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus lugdunensis HKU09-01]
          Length = 626

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 397/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MTQNYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  + +LD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEAHLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N++  +     +      VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDDLIIEDNVVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDIGYELGMISEARYARFNEKRQQIQDEIDRLTHI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ +   +  I  +A +    V E++
Sbjct: 481 RIKPNAHTQSVIEAHGGSQLKDGI--LAIDLLRRPEMTYDTILEILGEAHQLPEAVAEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEQKKIPEDLDYSKVDSLATEAREKLAKVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|16081153|ref|NP_391981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312084|ref|ZP_03593931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221316409|ref|ZP_03598214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221321322|ref|ZP_03602616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325605|ref|ZP_03606899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313662|ref|YP_004205949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis BSn5]
 gi|121187|sp|P25812|MNMG_BACSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|40026|emb|CAA44404.1| unnamed protein product [Bacillus subtilis]
 gi|467385|dbj|BAA05231.1| unknown [Bacillus subtilis]
 gi|2636648|emb|CAB16138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291486740|dbj|BAI87815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. natto BEST195]
 gi|320019936|gb|ADV94922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis BSn5]
          Length = 628

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/619 (43%), Positives = 381/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTLLQGIV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +  R   VV+TTGT+LRG I +G L   +G     PS  L  
Sbjct: 127 ERLIVEDGECRGVITQTGAHYRAKAVVMTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVKSDTIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI+ L+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLATIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKITNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R   F K        +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+
Sbjct: 487 PSPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPPEVPVPQDVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKNVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|119471638|ref|ZP_01614023.1| glucose-inhibited division protein A [Alteromonadales bacterium
           TW-7]
 gi|119445417|gb|EAW26704.1| glucose-inhibited division protein A [Alteromonadales bacterium
           TW-7]
          Length = 629

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/623 (46%), Positives = 397/623 (63%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   IFHENFDVIVVGGGHAGTEAALAAARMGMNTLLLTHNMDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR LN  KGPAVR  R QADR LY+ A+Q  + +QENL + 
Sbjct: 62  EIDALGGAMAQAIDKGGIQFRTLNSSKGPAVRATRAQADRALYKAAIQTTLQNQENLKIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E + ++ +V Q        +VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQSCDDLIVENDRVTGVVTQMGLRFSAPSVVLTVGTFLGGQIHIGLENYKGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           +L     +  F   RLKTGTP R+D +T+ + K ++Q  D     FSF+  +  + Q I 
Sbjct: 182 ALAQRLREQPFRVDRLKTGTPPRIDARTVDFSKMQEQPGDAPTPVFSFLGKQSDHPQQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 242 CYITYTNEKTHDVIRKNLHRSPMYSGVIEGIGPRYCPSIEDKIVRFADKDKHQIFVEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +  +YPNGIST+LP ++Q + +++I G E  +I RPGYAIEYDY +P++L  +LETK 
Sbjct: 302 LTSYELYPNGISTSLPFDVQLEIVQSITGFENAHICRPGYAIEYDYFDPRDLKQSLETKF 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEA AQGL+AG+N+A K    D     R ++Y+GV+IDDL + G
Sbjct: 362 IEGLFFAGQINGTTGYEEAGAQGLIAGMNAALKVQGKDSWTPRRDEAYVGVLIDDLATLG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F + ++     +  +K
Sbjct: 422 TKEPYRMFTSRAEYRLLLREDNADIRLTEKGRELGLVNDERWQAFNEKMEIIEKEKQRIK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-ER 535
              +   +       ++      +  +  E L  P+    +L +I     +F++    E+
Sbjct: 482 DTWIHKDHTVVDQVNALLKAPLTREASLEELLRRPEIRYDDLMAIEGLGSEFTNKAALEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + YA Y  RQ  E  +    E+ ++PK+FDY ++  LSNE+  KL   +P  + QA
Sbjct: 542 VEIHTKYAGYIARQQDEINKQLRHEETILPKEFDYKTVSGLSNEVVAKLEESRPDTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+TPAA++LLL+Y+KK  +
Sbjct: 602 SRISGITPAAISLLLVYLKKQGL 624


>gi|114565206|ref|YP_752720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella frigidimarina NCIMB 400]
 gi|122298231|sp|Q07VT3|MNMG_SHEFN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114336499|gb|ABI73881.1| glucose inhibited division protein A [Shewanella frigidimarina
           NCIMB 400]
          Length = 629

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/622 (45%), Positives = 387/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMATATDFAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQHILQNQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLVVENDKVIGVVTQMGLAFEAPAIVLTTGTFLSGKIHIGMQNYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L N   + +   GRLKTGTP R+D  TI + +  +Q  D  L   SF+ D   + RQ+ C
Sbjct: 183 LANRLRELNIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFIGDVSQHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 FITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 STNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIMRPGYAIEYDYFDPRDLKNSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEA AQGL+AG+N++ +       C  R ++Y+GV++DDL++ G 
Sbjct: 363 EGLYFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKTAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + ++R + F    +        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDKRWESFIAKRESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
             +   +     ++ +      +  +  + L  P+     L S+             E++
Sbjct: 483 QWVHPNSALLGVLNPELNTPISREASFEDLLRRPEMDYAKLMSLEGFGPGLDDQQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E  L+P D DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIRHENSLLPLDLDYQEVPGLSNEVIAKLNNHKPDTVGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|326568737|gb|EGE18807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis BC8]
          Length = 632

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/626 (47%), Positives = 396/626 (63%), Gaps = 8/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDESSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMANTGEILTKENSLLDLLKRPNITFDDIAKV--SDSTVSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+TPAA++LL + IKK  +K  + V+
Sbjct: 608 GVTPAAVSLLAMTIKK--LKKTQAVM 631


>gi|254000527|ref|YP_003052590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylovorus sp. SIP3-4]
 gi|253987206|gb|ACT52063.1| glucose inhibited division protein A [Methylovorus sp. SIP3-4]
          Length = 631

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/628 (45%), Positives = 400/628 (63%), Gaps = 5/628 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPEKFDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q
Sbjct: 63  VDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQANLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +    + +V Q         VVLT GTFL G++H+G     AGR GD P+ S
Sbjct: 123 QAVDDIILDGTRAAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L     +     GRLKTGTP R+DG+TI +    +Q  D+ +  FSF+ +   +  Q+ C
Sbjct: 183 LAARLREIGLPAGRLKTGTPPRIDGRTIDYSVMLEQPGDDPVPVFSFLGNASQHPAQLPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL
Sbjct: 243 WITSTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK +
Sbjct: 303 TTNEIYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKNSLETKAV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG N+A  + + D  C +R  +Y+GV++DDL ++GV
Sbjct: 363 QGLFFAGQINGTTGYEEAAAQGLLAGANAALYAQEKDSWCPARDQAYLGVLVDDLITRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R + F++  +     +  L+ 
Sbjct: 423 SEPYRMFTSRAEYRLMLREDNADMRLTEAGRRIGLVDDARWEAFSRKQEAILREQERLRK 482

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +    +S+     +  KQ  +  + +E L  P+ S + L ++     +    V ++++
Sbjct: 483 TYVHPGQVSADVMEKVLGKQIDREYSMFELLRRPEVSYEALLTLAEGDGEQDEQVRQQIE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  RQ  E +  + +E   +P D DY  +  LS E ++KL+  KP  + QAS+
Sbjct: 543 IAAKYQGYIDRQADEIERQRGQEDTRLPADMDYREVHGLSIEAQQKLNAQKPETVGQASR 602

Query: 598 IEGMTPAALNLLLIYIK-KNTVKLNEIV 624
           I G+TPAA++LLL+++K +N  K +++ 
Sbjct: 603 ISGITPAAISLLLVHLKRRNRSKKSDVA 630


>gi|15616623|ref|NP_244929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus halodurans C-125]
 gi|12643249|sp|Q9RCA8|MNMG_BACHD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|10176686|dbj|BAB07780.1| glucose-inhibited division protein [Bacillus halodurans C-125]
          Length = 632

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/618 (43%), Positives = 388/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   EFDVIVVGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  +ENL + QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEEENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R   VV+TTGT+LRG I IG L   +G     PS +L  
Sbjct: 127 ERLIIEDGECRGVITNTGAEYRAKAVVVTTGTYLRGKIIIGDLAYESGPNNMQPSINLSY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++G+TI +DKTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFEMVRFKTGTPPRVNGETIDYDKTEIQPGDEVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 247 TGDKTHQIINDNLGRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRHTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +++IPGLEK  ++RPGYAIEYD I P +L+PTLETKK+ GLF
Sbjct: 307 VYVQGLSTSLPEDVQLDVLKSIPGLEKARMMRPGYAIEYDAIVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAALRVQGKDGLILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G ++G I   R +RF +   +    +  L+S+ + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEKGYEIGLIARERYERFCEKKAQIAAEKKRLESITVK 486

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                N     +      +   A  FL  P+ + +++  + P    + S+ V E+++I+ 
Sbjct: 487 PSKEVNALLEEVGSAPLKEAVQANVFLKRPEVTYEHVAKVIPAPEQELSADVAEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +  K    + IP+D DY ++  L+ E K+KLS ++P ++ QAS++ G
Sbjct: 547 KYEGYISKMLQQVERAKKMNDKKIPEDLDYDAINGLATEAKQKLSEVRPLSVGQASRVSG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           + P+ +++LL+Y+++  +
Sbjct: 607 VNPSDISILLVYLEQGRL 624


>gi|313202486|ref|YP_004041144.1| glucose inhibited division protein a [Methylovorus sp. MP688]
 gi|312441802|gb|ADQ85908.1| glucose inhibited division protein A [Methylovorus sp. MP688]
          Length = 631

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/628 (45%), Positives = 400/628 (63%), Gaps = 5/628 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPEKFDVIVVGGGHAGTEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q
Sbjct: 63  VDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQANLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +    + +V Q         VVLT GTFL G++H+G     AGR GD P+ S
Sbjct: 123 QAVDDIILDGTRAAGVVTQLGLRFESKAVVLTAGTFLAGLVHVGLANYQAGRAGDPPAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L     +     GRLKTGTP R+DG+TI +    +Q  D+ +  FSF+ +   +  Q+ C
Sbjct: 183 LAARLREIGLPAGRLKTGTPPRIDGRTIDYSVMLEQPGDDPVPVFSFLGNASQHPAQLPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQIFLEPEGL
Sbjct: 243 WITSTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSVEDKIHRFADKESHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP +IQ+Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK +
Sbjct: 303 TTNEIYPNGISTSLPFDIQYQLVRSIKGLENAHILRPGYAIEYDYYDPRGLKNSLETKAV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG N+A  + + D  C +R  +Y+GV++DDL ++GV
Sbjct: 363 QGLFFAGQINGTTGYEEAAAQGLLAGANAALYAQEKDSWCPARDQAYLGVLVDDLITRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R + F++  +     +  L+ 
Sbjct: 423 SEPYRMFTSRAEYRLMLREDNADMRLTEAGRRIGLVDDARWEAFSRKQEAILREQERLRK 482

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +    +S+     +  KQ  +  + +E L  P+ S + L ++     +    V ++++
Sbjct: 483 TYVHPGQVSADVMEKVLGKQIDREYSMFELLRRPEVSYEALLTLAEGDGEQDEQVRQQIE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  RQ  E +  + +E   +P D DY  +  LS E ++KL+  KP  + QAS+
Sbjct: 543 IAAKYQGYIDRQADEIERQRGQEDTPLPADMDYREVHGLSIEAQQKLNAQKPETVGQASR 602

Query: 598 IEGMTPAALNLLLIYIK-KNTVKLNEIV 624
           I G+TPAA++LLL+++K +N  K +++ 
Sbjct: 603 ISGITPAAISLLLVHLKRRNRSKKSDVA 630


>gi|299531163|ref|ZP_07044575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Comamonas testosteroni S44]
 gi|298720866|gb|EFI61811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Comamonas testosteroni S44]
          Length = 654

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/642 (45%), Positives = 394/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMALATDKGGIQFRILNSSKGPAVRATRAQADRILYKAAIREMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGLKFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM ++
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGEVPVFSFMGNR 241

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 242 AMHPRQMPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ETK+I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R ++Y+GV+
Sbjct: 362 KSSFETKQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGEGPWMPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRQMGLVDDARWDSFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF--------- 519
           +     LKS  +  + +    S  +  K   +    ++ L  P      L          
Sbjct: 482 SRETERLKSTWVNPRVVAPEESERVLGKAMEREYNLFDLLRRPGVDYDKLMGMNQGKYAC 541

Query: 520 -SICPD-ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
             + P+   + S  VIE+++I + Y+ Y  RQ  E +     E+  +P DFDY  + ALS
Sbjct: 542 ADVQPEALGELSVPVIEQVEIAAKYSGYIDRQKDEVERAAHFERLRLPLDFDYMQVAALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 602 FEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|15600758|ref|NP_254252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas aeruginosa PAO1]
 gi|21263691|sp|Q9HT09|MNMG_PSEAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9951906|gb|AAG08950.1|AE004968_4 glucose-inhibited division protein A [Pseudomonas aeruginosa PAO1]
          Length = 630

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/616 (47%), Positives = 382/616 (62%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAEATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +              LS P+     L  I  +A   +  V E+++I + 
Sbjct: 487 PNTPQGDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGNAVD-NPQVAEQVEIRTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+
Sbjct: 546 YAGYIDRQQEEISRLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNT 617
           TPAA++LLLI++KK  
Sbjct: 606 TPAAISLLLIHLKKRA 621


>gi|270158240|ref|ZP_06186897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella longbeachae D-4968]
 gi|289163504|ref|YP_003453642.1| glucose-inhibited division protein A GidA [Legionella longbeachae
           NSW150]
 gi|269990265|gb|EEZ96519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella longbeachae D-4968]
 gi|288856677|emb|CBJ10488.1| putative glucose-inhibited division protein A GidA [Legionella
           longbeachae NSW150]
          Length = 624

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/620 (48%), Positives = 409/620 (65%), Gaps = 3/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI++GGGHAG EAA  AA++G  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEKLYDVIIVGGGHAGTEAALAAARMGMQTLLLTHNMDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ +QENL + Q
Sbjct: 63  IDALDGAMAKAADKAGIQFRILNASKGPAVRATRAQADRVLYRQAIREQLQTQENLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ ++ Q    +R   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLLIEGERVAGVITQMGFTLRARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSVA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L  S    D   GRLKTGTP R+D +++ +++   Q  D  +  FS++     + Q I C
Sbjct: 183 LAKSLRDLDLPVGRLKTGTPPRIDRRSLDYNQMIVQPGDTPIPVFSYLGHVSDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEGL
Sbjct: 243 HITHTTEATHEIIRNNLHKSPMYAGVIEGVGPRYCPSIEDKIVRFADKSSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKPI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A    + +  C  R ++YIGV+IDDL ++G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALYVQEKELWCPRRDEAYIGVLIDDLITRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +GE R + FA   +     +SLL S
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGIVGETRWQHFATKREAIESTQSLLHS 482

Query: 481 LVL-TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQI 538
             +  S N   + +          A EFL  P+ +  +L  +   +  + +S V E+++I
Sbjct: 483 TWVRVSHNQILSDVLVNPMQHDTRAVEFLKRPEINYHHLLMLPDLNLPELASEVSEQIEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  + ++++ +E  ++P+  DYS +  LSNE+ +KL+ ++P  L QAS+I
Sbjct: 543 QNKYAGYIDRQQQDIEKMRKQENMVLPEWLDYSEVTGLSNEVIQKLTKIRPTTLAQASRI 602

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAAL+LLL+++KK  +
Sbjct: 603 SGVTPAALSLLLVHLKKQRI 622


>gi|308051498|ref|YP_003915064.1| glucose inhibited division protein A [Ferrimonas balearica DSM
           9799]
 gi|307633688|gb|ADN77990.1| glucose inhibited division protein A [Ferrimonas balearica DSM
           9799]
          Length = 629

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/620 (45%), Positives = 391/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIV+GGGHAG EAA  +A+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHYDVIVVGGGHAGTEAALASARTGARTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D AGIQFR LN  KGPAVR  R QADR LYR A+Q+ + +Q NL + Q  
Sbjct: 65  ALGGAMARATDRAGIQFRTLNASKGPAVRATRAQADRALYRQAIQQILFNQPNLQIFQQG 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++ ++           VVLT GTFL G IHIG      GR+GD+ +  L 
Sbjct: 125 VNDLILEGDKVTGVITDAGIHFGAEAVVLTVGTFLDGKIHIGLDNYAGGRIGDTNAVRLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +      RLKTGTPARLD +++ +   ++Q  D     FS++ D+    RQI C I
Sbjct: 185 HRLRELPLRIDRLKTGTPARLDARSLDFSVMQEQPGDNPTPVFSYIGDRSEQPRQISCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPS+EDK++RF ++  HQIF+EPEGLN+
Sbjct: 245 THTNERTHEIIRSGLDRSPMYTGVIEGIGPRYCPSVEDKVMRFADKTSHQIFVEPEGLNS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G E+  I+RPGYAIEYD+ +P++L  +LE+K + G
Sbjct: 305 IEIYPNGISTSLPFDVQLELVRSIKGFEQARILRPGYAIEYDFFDPRDLKASLESKFLEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+AR+    +     R  +Y+GV++DDL++ G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLLAGLNAARRVRGEESWAPRRDQAYLGVLVDDLSTLGTQE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT +G ++G I + R  +F   ++     R  L+S  
Sbjct: 425 PYRMFTSRAEHRLLLREDNADLRLTEMGREMGLIDDERWAKFNAKVEAIELERQRLRSTW 484

Query: 483 LTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQI 538
           +   + ++ +++        +     + L  P+ +   + ++             E+++I
Sbjct: 485 VQKDSAAAAALNPLLKSPMTREANLEDLLRRPELTYDQIMAVEDLGPALDHEQAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  RQ  E ++ +  E+ L+P D DY  +  LSNE+  KL   KP  L  AS+I
Sbjct: 545 QVKYAGYIERQKDEIEKARRHEQTLLPLDLDYRQVKGLSNEVMAKLMEHKPETLGSASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++LLL+Y+KK+ +
Sbjct: 605 SGVTPAAISLLLVYLKKHGL 624


>gi|146284513|ref|YP_001174666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas stutzeri A1501]
 gi|166222723|sp|A4VS73|MNMG_PSEU5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145572718|gb|ABP81824.1| glucose-inhibited division protein A [Pseudomonas stutzeri A1501]
          Length = 630

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/617 (46%), Positives = 390/617 (63%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAVATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRELLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+N +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQNEVRGVVTQMGLRFLATSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ + +  +Q  D  L   SF+  +  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSQMTEQPGDTPLPVMSFLGSREQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYLGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCAKREGIEREEQRLKNSWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +      +       L+ P+   Q+L  +     +    V E+++I++ 
Sbjct: 487 PGTPQGDAIAERFGSPLAREYNLLNLLARPEIDYQSLIELT-GPGEPDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E ++++  E   +P D DY+++  LS E++ KL   +P  L QAS+I G+
Sbjct: 546 YAGYIERQQDEIEKLRASENVALPADLDYATISGLSKEIQHKLGQARPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK + 
Sbjct: 606 TPAAVSLLMIHLKKRSA 622


>gi|332143484|ref|YP_004429222.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693237|sp|B4RS92|MNMG_ALTMD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|327553506|gb|AEB00225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 633

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/629 (46%), Positives = 394/629 (62%), Gaps = 7/629 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+GGGHAG EAA  AA++GA+T L+TH   TIG MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTEAFDVIVVGGGHAGTEAALAAARMGANTLLLTHNIETIGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q
Sbjct: 63  IDALGGAMALAIDKGGIQFRTLNSSKGPAVRATRAQADRTLYKNAIRDIVENQENLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q     +  +VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QSVDDLIVENDRVCGVVTQMGLKFKAKSVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +      F   RLKTGTPARLD +++ +   + Q  D     FSFM D+  +  QI C
Sbjct: 183 LADRLRALPFRVDRLKTGTPARLDARSLDFSVMQPQPGDSPTPVFSFMGDRAMHPTQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YITHTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  VYPNGIST+LP ++Q   +R+I G E  +I+RPGYAIEYD+ +P++L  TLETK I
Sbjct: 303 NSIEVYPNGISTSLPFDVQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGLVAG N+A +  + D     R  +Y+GV+IDDL + G 
Sbjct: 363 QGLFFAGQINGTTGYEEAGAQGLVAGANAALQVQQKDPFILRRDQAYMGVLIDDLATMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R  ++   ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADSRLTAMGREIGLVDDARWAKYNDKMEAVETELQRLRG 482

Query: 481 LVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV-IERL 536
             +   + ++  ++        +  +  E +  P+ +   L  I          +  E++
Sbjct: 483 QWIHPDHAATPQLNTMLKNPVSREHSLEELIRRPEMTYSQLMKIESVGPGIDDPIAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQM E  + +  E  L+P D D+S +  LSNE+  KL+  +P  + +AS
Sbjct: 543 EIQIKYAGYIARQMDEIAKTQRHENTLLPIDMDFSKISGLSNEVVAKLTEARPETIGKAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNT--VKLNEI 623
           +I G+TPAA++LLL+Y+KK+    K ++I
Sbjct: 603 RISGITPAAISLLLVYLKKHGMLRKQDKI 631


>gi|269468172|gb|EEZ79871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [uncultured SUP05 cluster bacterium]
          Length = 623

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/618 (48%), Positives = 393/618 (63%), Gaps = 2/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ Y VIVIGGGHAG EAA  +A++G +T LITH   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   SKHYSVIVIGGGHAGTEAALASARMGVNTLLITHNIETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G M    D AGIQFR LN  KGPAVR  R QADR LY+ +++  + +QE+L + Q 
Sbjct: 64  DAMGGAMATAIDKAGIQFRTLNASKGPAVRATRAQADRVLYKASIRYILENQEDLSLFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N+I  +  Q         V+LT+GTFL G+IHIG+     GR GD+PSN+L
Sbjct: 124 AVDDLVIKDNVIKGVKTQMGLSFLADKVILTSGTFLGGMIHIGQSNFEGGRAGDAPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECG 241
             +   +D   GRLKTGTP RLDG+TI +   + Q  D  L  FSFM     +  QI C 
Sbjct: 184 SRTLRAYDLGVGRLKTGTPPRLDGRTIDFSVLQAQPGDTPLPTFSFMGKLSDHPDQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH  I + +K S +Y+G+I+  GPRYCPSIEDK+VRF ER+ HQIF+EPEGL 
Sbjct: 244 ITHTNEKTHDFIRDGLKDSPMYTGNIEGIGPRYCPSIEDKVVRFAERDSHQIFVEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VYPNG+ST+LP E+Q  FI +I G E   I+RPGYAIEYD+ +P+ L  TLE KKIS
Sbjct: 304 TNEVYPNGVSTSLPYEVQVDFIHSIKGFENAKIVRPGYAIEYDFFDPRGLKQTLEVKKIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A    + +     R +SYIGVM+DDL +KG  
Sbjct: 364 GLYFAGQINGTTGYEEAAAQGLLAGVNAACSVQEKNPWHPKRDESYIGVMVDDLITKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP   +LG I + R + F K  +     +  LKS 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADERLTPKARELGLIDDARWQAFEKKYKTVAQEKQRLKST 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
            + + +  +            +  E L  P  S   L  I           +I  ++ + 
Sbjct: 484 WIQANDTQAGETLGLSLSHEYSLLELLKRPKVSYDTLSKIESGKPFLTDRTLIALVENQI 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ+ E ++ +  E   +    DY S+ ALS E+++KLS  KP  + QAS+I+G
Sbjct: 544 KYEGYIKRQLEEIEKYRKNEDTKLSGHMDYDSIKALSAEVRQKLSQYKPETIGQASRIQG 603

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPA++++LL+Y+K   V
Sbjct: 604 VTPASISILLVYLKTYKV 621


>gi|226327001|ref|ZP_03802519.1| hypothetical protein PROPEN_00861 [Proteus penneri ATCC 35198]
 gi|225204838|gb|EEG87192.1| hypothetical protein PROPEN_00861 [Proteus penneri ATCC 35198]
          Length = 633

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/618 (47%), Positives = 394/618 (63%), Gaps = 7/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHFDVIVIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ GLM    D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  AMGGLMATAIDHAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTTLENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V +     R  +VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENDQVTGAVTRMGLKFRAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPSVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +   +     GRLKTGTP R+D +TI + +   Q  D  +  FSF+ +   +  Q+ C I
Sbjct: 185 HRLRELPLRVGRLKTGTPPRIDARTIDFSQLAVQLGDTPMPVFSFLGNVDQHPEQMPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 TYTNEKTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNSHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I+G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVNSMKGMENAKIIRPGYAIEYDFFDPRDLKQTLESKFING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG++AG+N+AR +   +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGMLAGLNAARYAFDQEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   F++ ++     R  L+++ 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEIGRELGMVDDTRWAEFSEKVELVEKERQRLRNIW 484

Query: 483 LTSK--NLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERL 536
           +  +  NLS  +   K    K     + L  P+ +   L +I    P          E++
Sbjct: 485 VHPQADNLSEINELLKTPLSKEANGEDLLRRPEMTYNILKNISRFAPGIDDSKPQAAEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E ++ +  E   +P D DY  +  LSNE+  KL+  KP ++ QAS
Sbjct: 545 EIQVKYEGYISRQQEEIEKKQRNENAALPIDLDYKQVSGLSNEVIAKLNDHKPTSIGQAS 604

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPAA+++LL+++K
Sbjct: 605 RISGVTPAAISILLVWLK 622


>gi|120600846|ref|YP_965420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. W3-18-1]
 gi|146295047|ref|YP_001185471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella putrefaciens CN-32]
 gi|166200614|sp|A4YCI9|MNMG_SHEPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200616|sp|A1RQC1|MNMG_SHESW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120560939|gb|ABM26866.1| glucose inhibited division protein A [Shewanella sp. W3-18-1]
 gi|145566737|gb|ABP77672.1| glucose inhibited division protein A [Shewanella putrefaciens
           CN-32]
          Length = 629

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 386/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q         +VLTTGTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLIVENDRVVGVVTQMGLAFESPAIVLTTGTFLSGKIHIGLENYSGGRAGDPPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LANRLRELPIRVGRLKTGTPPRIDANTIDFSQMAEQKGDSPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTTEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGL+AG+N++ +    D  C  R ++Y+GV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAAAQGLLAGMNASLQVQGKDAWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L++
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTAKGRELGLVDDIRWAAFSEKLESIELELQRLRA 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +++        +  +  E L  P+     L  I          L  E++
Sbjct: 483 QWVHPNSPLIHALNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLEDPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P   DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLHLDYKEVPGLSNEVIAKLNSHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGVTPAAISILLVHLKKRGL 624


>gi|295402128|ref|ZP_06812087.1| glucose inhibited division protein A [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112751|ref|YP_003991067.1| glucose inhibited division protein A [Geobacillus sp. Y4.1MC1]
 gi|294975811|gb|EFG51430.1| glucose inhibited division protein A [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217852|gb|ADP76456.1| glucose inhibited division protein A [Geobacillus sp. Y4.1MC1]
          Length = 629

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 395/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GA T +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALAAARIGAKTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 67  LGGEMARNIDKTYIQMRMLNTGKGPAVRALRAQADKVLYQREMKKTLENQENLTLLQGKV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 127 ERLIVEDGVCKGVITHTGAHYYAKTVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++ +TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFELVRFKTGTPPRVNSRTIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T+ 
Sbjct: 247 TTPETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRETEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 307 VYVQGLSTSLPEHIQRQLLATIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKLVKNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+AR++   + I  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARRALGKEEIILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G K+G I E R ++F    +     +  L++ ++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTELGYKIGLISEERYQKFLAKKEAIEREKKRLQTFIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 K +     S  +DG    A + L  P+ + +++  + P   + S  V E+++I+
Sbjct: 487 PTPEVQKVIREAGGSELKDGIR--AADLLRRPEMTYEHIKQLAPAEEEISPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + + +K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 545 IKYEGYIQKSLQQVERLKKMENKKIPEDIDYDAIHGLATEARQKLKQVRPLSIAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|253987528|ref|YP_003038884.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253778978|emb|CAQ82138.1| trna uridine 5-carboxymethylaminomethyl modification enzyme gid
           (glucose-inhibited division protein a) [Photorhabdus
           asymbiotica]
          Length = 629

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 391/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EQFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAIRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E +++   V +     R   VVLT GTFL G IHIG      GR GD P+ SL 
Sbjct: 125 VEDLIVENDMVIGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D     FSF+ +   + Q + C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLTQQLGDTPTPVFSFLGNAGQHPQQMPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 THTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   I+RPGYAIEYD+ +P++L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIVRPGYAIEYDFFDPRDLKQTLESKFIHG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR + + +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYATEEEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++     R  L+++ 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRKLGLVDDSRWEHYCRKVEMIEQERQRLRNIW 484

Query: 483 LTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +   + +   I+        K     + L  P+ + + L S+   +         ++++I
Sbjct: 485 IHPHSNNLIDINDILKTPLSKEANGEDLLRRPEMNYELLTSLPLFSPGLKEPQTADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIEKQLRNENTSLPIDLDYCQISGLSNEVVAKLNDHKPSSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGITPAAISILLVWLKKQGL 624


>gi|85712598|ref|ZP_01043645.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina baltica OS145]
 gi|85693589|gb|EAQ31540.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Idiomarina baltica OS145]
          Length = 631

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/620 (46%), Positives = 392/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 7   QTYDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M + AD AGIQFR LN  KGPAVR  R QADR+LY+ A++  + +Q NL + Q  
Sbjct: 67  ALGGIMAKAADKAGIQFRTLNSSKGPAVRATRAQADRQLYKQAIRYALETQPNLTLFQQG 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + ++ +V Q         VVLT GTFL G IHIG      GR GD P+N+L 
Sbjct: 127 CDDLIVENDQVTGVVTQMGLKFHARAVVLTVGTFLGGRIHIGLDNYQGGRAGDPPANALS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
                      RLKTGTP R+   +I +   ++Q  D     FS++  +  + Q I C I
Sbjct: 187 QRLRALPLRVDRLKTGTPPRIASHSIDFSVMQEQPGDTPTPVFSYLGSRADHPQQIPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I   +  S +YSG+I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLNT
Sbjct: 247 THTNEQTHDVIRSGLDRSPMYSGEIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGLNT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q Q +++I G E   I RPGYAIEYDY +P++L  +LETK I+G
Sbjct: 307 FEVYPNGISTSLPFDVQQQLVQSIRGFENAVITRPGYAIEYDYFDPRDLKQSLETKVING 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+AR +   +     R  +Y+GV+IDDL++ G  E
Sbjct: 367 LFFAGQINGTTGYEEAGAQGLIAGLNAARLAQDKETWSPRRDQAYMGVLIDDLSTLGTQE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + F   ++     +  L+S  
Sbjct: 427 PYRMFTSRAEYRLLLREDNADIRLTETGRELGLVDDERWQAFNLKMEAIEQEKQRLRSTW 486

Query: 483 LTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQI 538
           +   +    SI+        K  +  E L  P+ + Q L      A   S     E+++I
Sbjct: 487 VHKDHPEIDSINAFVKSPITKEVSGEELLRRPEVNYQQLVKTPFFAPGLSDSAAAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E  + +  E   +P  FDY+S+  LSNE+  KL+  +P  + +A++I
Sbjct: 547 QTKYAGYISRQQDEIAKQQRHENTRLPNQFDYTSIKGLSNEVIAKLNQHQPETVGKAARI 606

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 607 SGITPAAISMLLVHLKKQGL 626


>gi|327482902|gb|AEA86212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas stutzeri DSM 4166]
          Length = 630

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/617 (46%), Positives = 390/617 (63%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAVATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRELLENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+N +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L   
Sbjct: 127 DLIVEQNEVRGVVTQMGLRFLATSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+DG+++ + +  +Q  D  L   SF+  +  +   + C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGRSVDFSQMTEQPGDTPLPVMSFLGSREQHPPQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T  
Sbjct: 247 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIYRFADKDSHQVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 307 LYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   D  C  R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGANAALRAQGKDSWCPRRDEAYLGVLVDDLITLGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCAKREGIEREEQRLKNSWVR 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +      +       L+ P+   Q+L  +     +    V E+++I++ 
Sbjct: 487 PGTPQGDAIAERFGSPLAREYNLLNLLARPEIDYQSLIELT-GPGEPDPQVAEQVEIKTK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E ++++  E   +P D DY+++  LS E++ KL   +P  L QAS+I G+
Sbjct: 546 YAGYIERQQDEIEKLRASENVALPADLDYATISGLSKEIQHKLGQARPQTLGQASRIPGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL+I++KK + 
Sbjct: 606 TPAAVSLLMIHLKKRSA 622


>gi|117918461|ref|YP_867653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sp. ANA-3]
 gi|166200615|sp|A0KR28|MNMG_SHESA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117610793|gb|ABK46247.1| glucose inhibited division protein A [Shewanella sp. ANA-3]
          Length = 629

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 385/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +  +V Q         VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLVVDNDRVVGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LAHRLRELPIRVGRLKTGTPPRIDANTIDFTQMTEQKGDTPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIQGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N+A +    +  C  R ++YIGV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNAALQVQGKEAWCPRRDEAYIGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWASFSEKMESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++        +  +  E L  P+     L  I          L  E++
Sbjct: 483 QWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYSKLMQIEGFGPGLADPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|296330031|ref|ZP_06872515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676755|ref|YP_003868427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153070|gb|EFG93935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414999|gb|ADM40118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 628

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/619 (43%), Positives = 381/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTMLQGIV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ Q  +  R   VV+TTGT+LRG I +G L   +G     PS  L  
Sbjct: 127 ERLIVEDGECRGVITQTGAHYRAKAVVMTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVKSDSIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +TH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPKTHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLE V ++R GYAIEYD I P +L+PTLETKKI+ L+
Sbjct: 307 VYVQGLSTSLPEDVQQRMLATIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKITNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R   F K        +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIK 486

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + + S   S  +DG   T  + +  P+ + + +  + P        V E+++I+
Sbjct: 487 PSPENQEYIRSLGGSELKDGVRGT--DLMKRPEMNYETVTKLAPPEVPVPQDVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKNVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|222109270|ref|YP_002551534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Acidovorax ebreus TPSY]
 gi|254811509|sp|B9M9W3|MNMG_ACIET RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|221728714|gb|ACM31534.1| glucose inhibited division protein A [Acidovorax ebreus TPSY]
          Length = 657

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/642 (45%), Positives = 395/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQDFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM + 
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGAVPVFSFMGNA 241

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 242 AMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +         +R ++Y+GV+
Sbjct: 362 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGERAWVPARDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTDAGRRMGLVDDARWDAFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
           +     LKS  +  +NL    +  +  K        ++ L  PD     L ++       
Sbjct: 482 SRETERLKSTWVNPRNLPTVEAERVLGKAIEHEYNLFDLLRRPDVGYDALTTMDGGKYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                    + S+ VIE+++I + YA Y  RQ  E +     EK  +P+D DY  + ALS
Sbjct: 542 EAVSRETLGELSAPVIEQVEIAAKYAGYIERQRDEVQRAAHFEKLRLPEDLDYMQVAALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 602 IEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 643


>gi|157377627|ref|YP_001476227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella sediminis HAW-EB3]
 gi|189039359|sp|A8G1X6|MNMG_SHESH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157320001|gb|ABV39099.1| glucose inhibited division protein A [Shewanella sediminis HAW-EB3]
          Length = 632

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVIGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQEILQNQPNLRLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V Q         VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDLIVENGKVTGVVTQMGLAFEAPAVVLTAGTFLSGKIHIGMQNYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   +     GRLKTGTP R+D  TI +D   +Q  D  L   SF+ D   + RQ+ C
Sbjct: 183 LADRLRELPIRIGRLKTGTPPRIDANTINFDLMTEQKGDTPLPVMSFIGDVSHHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 FVTHTNERTHDIIRGGLDRSPMYSGIIEGVGPRYCPSIEDKINRFADKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++Y+GV++DDL++ G 
Sbjct: 363 QGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKESWCPRRDEAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + E R  +F K  +        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGHQIGLVDEDRWAKFNKKRESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++ +      +  +  + L  P+     L S+             E++
Sbjct: 483 QWVHPNSPLLEVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPALEDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKAIKHETTGLPLELDYQEVPGLSNEVIAKLNDHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++K+  +
Sbjct: 603 RISGMTPAAISILLVHLKRRGL 624


>gi|329768828|ref|ZP_08260257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella sanguinis M325]
 gi|328838221|gb|EGF87834.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella sanguinis M325]
          Length = 627

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/624 (44%), Positives = 385/624 (61%), Gaps = 7/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  +++ G ST +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAYASSRKGVSTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  TV++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VKELIIENNKVVGLKTMLGTAYKAKTVIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLP 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  D     FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDNEKHAFSYETTEYVEDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG I+  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNNSTHEIIDKNLGRSAMYSGVIQGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   + +I GLE   I+R GYAIEYD INP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVHSIAGLENAVIMRNGYAIEYDAINPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT    K G I E R K+F             LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYKYGLITEERYKKFCDKRNSVQNEIERLKTFRI 485

Query: 484 TS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T      + L   + +  +DG    A + L  P+ S +N+  +  D  K +  VIE+++I
Sbjct: 486 TPTQKTLEKLQELNSAEIRDGI--LAIDMLRRPELSYENIMYLAEDDTKLARDVIEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K   +  IPKD DY  +P+L+ E +EKL  + P  + QAS+I
Sbjct: 544 EVKYEGYIKKSLQQVEKLKKMNEMKIPKDLDYDDVPSLAIEAREKLKKVLPLTIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ PA +++LL+++++   + +E
Sbjct: 604 SGVNPADISILLVFLEQRRGRNDE 627


>gi|238899345|ref|YP_002925028.1| glucose-inhibited cell-division protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495847|sp|C4K911|MNMG_HAMD5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|229467106|gb|ACQ68880.1| glucose-inhibited cell-division protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 627

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 391/617 (63%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGH+G EAA  +A++G  T L+TH   T+G +SCNPAIGG+GKG LV+EIDA
Sbjct: 6   QFDVIVIGGGHSGTEAAMASARMGCKTLLLTHNIDTLGQLSCNPAIGGIGKGQLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG  AD A IQ R+LN  KGPAV+  R Q DR +YR  ++  + +Q NL + Q  V
Sbjct: 66  LGGLMGMAADKASIQSRILNASKGPAVKSTRVQLDRTVYRKVIRSALENQTNLSIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +++   V +        ++VLT GTFL G IH+G     AGR GD+ S SL +
Sbjct: 126 DDLILKNDLVVGAVTKMGLKFHAKSIVLTVGTFLDGKIHLGLENYSAGRAGDTASISLAS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              K     GRLKTGTP R+D ++I +   + Q  D  L  FSF+  +     Q  C IT
Sbjct: 186 QLRKLPLRIGRLKTGTPPRIDARSINFKNLKIQLGDTPLPLFSFLGRQHPPLTQKPCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N++ S +Y G I   GPRYCPSIEDKI+RF +R+ HQIFLEPEGL ++
Sbjct: 246 YTNEKTHEIIQKNLERSPMYRGIIDGIGPRYCPSIEDKIIRFSDRSAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q + +R+I G++   I+RPGYAIEYDY +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQLKIVRSIQGMKNAFIVRPGYAIEYDYFDPRDLKPTLESKHIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +   +     R  +YIGV++DDLT+ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRLARGEEGWFPLRNQAYIGVLVDDLTTLGTQEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG +LG + E R  RF + ++     +  L+S+ +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEIGYQLGLVDENRWCRFNQKVELIEQEKQRLRSIWI 485

Query: 484 TSKNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESS 541
              + +      K    +     + L  P+ +   L S+ P      ++    +++I+  
Sbjct: 486 KPNSDNQIDQIIKSPLSRETNGEDLLRRPEVNYSLLTSLKPFLPSLENNEAGMQVEIQIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E  +    E  L+P  FDYS +  LSNE+  KL+  KP +L QAS+I G+
Sbjct: 546 YEGYIVRQKEEIAKQLRNENTLLPLSFDYSLISGLSNEVVSKLNDHKPISLGQASRISGI 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA+++LL+++KK  +
Sbjct: 606 TPAAISILLVWLKKQGL 622


>gi|157373139|ref|YP_001481128.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Serratia proteamaculans 568]
 gi|205375714|sp|A8GLL0|MNMG_SERP5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157324903|gb|ABV44000.1| glucose inhibited division protein A [Serratia proteamaculans 568]
          Length = 629

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/620 (47%), Positives = 394/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EQFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL 
Sbjct: 125 VEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
               +      RLKTGTP R+D ++I +     Q  D  +  FSFM +   +  Q+ C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARSIDFSVLAPQHGDTPIPVFSFMGNAGQHPEQMACYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 TYTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q +R++ G++   IIRPGYAIEYD+ +P++L PTLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVRSMEGMQNARIIRPGYAIEYDFFDPRDLKPTLESKFIQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL++ G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAGRYANEDEGWSPRRDQAYLGVLVDDLSTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF++ ++     R  L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFSEKLEHIEQERQRLRDIW 484

Query: 483 LTS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +    +N+   +   K    +     E L  P+     L S+   A     +   E+++I
Sbjct: 485 MHPHAENVEQVNALLKAPLSREANGEELLRRPEMDYTQLTSVAAFAPPLADTQAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIEKQQRNENTVLPLDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LLI++KK  +
Sbjct: 605 SGITPAAISILLIWLKKQGL 624


>gi|332800541|ref|YP_004462040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Tepidanaerobacter sp. Re1]
 gi|332698276|gb|AEE92733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Tepidanaerobacter sp. Re1]
          Length = 628

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/618 (44%), Positives = 379/618 (61%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAGCEAA   A++G  T        +I  M+CNP+IGG GKG++VREIDA
Sbjct: 7   KYDVAVVGIGHAGCEAALATARMGLKTVAFAINLDSIALMACNPSIGGPGKGNMVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN KKGPAVR  R Q D+  Y  AM+  + SQENLD++Q EV
Sbjct: 67  LGGQMAINVDKTFIQVRMLNTKKGPAVRALRAQLDKRAYCAAMKYTVESQENLDIVQEEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +V +   +     V+LTTG +LRG I IG L   +G  G  P+N L  
Sbjct: 127 VKILVEGEKVKGVVTKTGGVYEARAVILTTGVYLRGRIVIGDLSYSSGPSGLFPANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S      + GR KTGTP R+   ++ + K   Q  D+ + PFS+ ++KI   Q+ C +T 
Sbjct: 187 SLESLGLELGRFKTGTPPRIHKDSVDFSKMIIQPGDDVITPFSYTSEKIQREQVPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+II EN+  + +Y+G+IK  GPRYCPS+E KIV F ++  HQIF+EPEG  T  
Sbjct: 247 TNETTHKIIAENLHRAPLYTGEIKGVGPRYCPSVEMKIVNFKDKKSHQIFIEPEGNGTRE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q     ++ GLE   I+R GYAIEYD++ P +L PTLETK + GL+
Sbjct: 307 MYVQGLSTSLPADVQIAMTHSVKGLENAKIMRFGYAIEYDFVVPTQLKPTLETKAVQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGL+AGIN+A K  + + +  SR+D+YIGV+IDDL +KGV EPY
Sbjct: 367 MAGQINGTSGYEEAAAQGLIAGINAALKIKEKEPLVLSRSDAYIGVLIDDLVTKGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL  IG  +G I + R ++F K  +  +     LKS+ +T
Sbjct: 427 RILTSRAEYRLLLRQDNADLRLMDIGHSIGLISDDRYEKFLKKKRLIDDEIKRLKSIKIT 486

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                N   T ++  +     T  E L  P+   + L  +  D  +    VIE+++I ++
Sbjct: 487 PTAKVNEVLTGLNTAKLNSPSTLAELLKRPELDYEKLKVLDEDREQLPDDVIEQVEIATA 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQM +  + K  E + IP D DY  +  L  E +EKL  +KP ++ QAS+I G+
Sbjct: 547 YEGYIERQMSQVAQFKKMENKKIPDDIDYDEIYGLGFEAREKLKEVKPISIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
            P+ + +LLIY++    K
Sbjct: 607 NPSDVTVLLIYLETKRRK 624


>gi|212640676|ref|YP_002317196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anoxybacillus flavithermus WK1]
 gi|259495844|sp|B7GMV9|MNMG_ANOFW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|212562156|gb|ACJ35211.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme, GidA [Anoxybacillus flavithermus
           WK1]
          Length = 638

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  AA++GAST +IT     I  M CNP+IGG  KG +VREIDA
Sbjct: 16  SYDVIVVGAGHAGCEAALAAARMGASTLVITLNLDMIAFMPCNPSIGGPAKGIVVREIDA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ + +QENL ++QG+V
Sbjct: 76  LGGEMGKNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQQEMKKTLENQENLTLLQGKV 135

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VV+TTGTFLRG I IG +K  +G     PS  L  
Sbjct: 136 EKLIVEDGVCKGVITHTGARYYAKAVVITTGTFLRGEIIIGDIKYSSGPNNQQPSIKLSE 195

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++  TI + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 196 HLEELGFELVRFKTGTPPRVNSHTIDYSKTEIQPGDDVPRAFSYETKQYITDQLPCWLTY 255

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +YSG IK  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 256 TTEETHRIIDENLHLSPMYSGMIKGTGPRYCPSIEDKIVRFHDKPRHQIFLEPEGRHTQE 315

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQ Q + TIPGLEK  ++R GYAIEYD I P +L+PTLETK +  L+
Sbjct: 316 VYVQGLSTSLPEHIQRQMLATIPGLEKAQLMRAGYAIEYDAIVPTQLWPTLETKVVQRLY 375

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A K+   + +  SR+++YIGV+IDDL +KG  EPY
Sbjct: 376 TAGQINGTSGYEEAAGQGLIAGINAACKALGKEELILSRSEAYIGVLIDDLVTKGTNEPY 435

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG K+G I + R ++F    +     +  LKS ++ 
Sbjct: 436 RLLTSRAEYRLLLRHDNADLRLTEIGYKIGLISQERYEKFVAKKEAIEAEKKRLKSYIIK 495

Query: 485 S-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + +     S  +DG    A + L  P+ + +++  I P  +     V E+++I+
Sbjct: 496 PTPQVQQLIRDVGGSELKDGIR--AADLLKRPEMTYEHIQMIAPAEQPIDPEVAEQVEIQ 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP+D DY ++  L+ E ++KL  ++P ++ QAS+I 
Sbjct: 554 IKYEGYIEKSLQQVEKLKKMENKKIPEDIDYDAITGLATEARQKLKQVRPLSIAQASRIS 613

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 614 GVNPADISILLVYLEQGKI 632


>gi|153956502|ref|YP_001397267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium kluyveri DSM 555]
 gi|219856805|ref|YP_002473927.1| hypothetical protein CKR_3462 [Clostridium kluyveri NBRC 12016]
 gi|189039335|sp|A5N450|MNMG_CLOK5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146349360|gb|EDK35896.1| GidA [Clostridium kluyveri DSM 555]
 gi|219570529|dbj|BAH08513.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 628

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/623 (43%), Positives = 388/623 (62%), Gaps = 4/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVIVIG GHAGCEA   AA++G  T + T    +IG M CNP IGG  KGHLVRE
Sbjct: 4   FSERYDVIVIGAGHAGCEAGLAAARMGCRTLMCTMNLDSIGFMPCNPNIGGTAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   DA  IQ R+LN  KGPAV   R QAD+  Y   M+  +  Q NLD+ Q
Sbjct: 64  IDALGGEMGVNIDATFIQSRMLNTSKGPAVHSLRAQADKRNYSGRMKSVLERQHNLDLKQ 123

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            EV G   +    +  ++ ++ +     T+VL+TGT+L+G + IG +   +G  G  P+N
Sbjct: 124 LEVVGIRIDNEGKVCGVITKNGAYFETKTIVLSTGTYLKGKVIIGDVSYSSGPNGFMPAN 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S +    +  R KTGTPAR++ +++ + K  +Q  D+R++PFSFM++ +  +Q+ C
Sbjct: 184 DLSQSLLDLGIEIRRFKTGTPARVNRRSVDFSKMIEQPGDKRIVPFSFMSENLDRKQVSC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   T ++I ENI  S +++G IKS GPRYCPSIEDKIVRF  +  HQIF+EPEG 
Sbjct: 244 YLTYTTENTTKVIRENINRSPLFNGSIKSVGPRYCPSIEDKIVRFPNKENHQIFIEPEGE 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y +G ST++PE++Q    RTI GLE V  +R GYAIEYD INP +L PTLE KK+
Sbjct: 304 DTNELYVDGASTSMPEDVQIAMYRTIIGLENVEFLRTGYAIEYDCINPLQLRPTLEFKKV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NG++GYEEAA+QG++AGIN+A K    +     R+D+YIGV+IDDL +KG 
Sbjct: 364 EGLFGAGQLNGSSGYEEAASQGIIAGINAALKVKGKEPFILKRSDAYIGVLIDDLVTKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLT +G K+G + + R  ++ +           +K+
Sbjct: 424 EEPYRMMTSRSEYRLILRQDNADLRLTEMGYKIGLVTKERYDKYLERKNSIETEIKRIKN 483

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L +T K        S+   +  K+ + YE +  P+     L  +  D  + +  V E + 
Sbjct: 484 LYITPKKEVIEFLNSLGSSELKKSISLYELIKRPELDYFKLQLLDMDRPELNEDVQEEVN 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ + ++ K  E + IP++ DY  +  L  E  +KL  ++P ++ QAS+
Sbjct: 544 IISKYEGYIKKQLEQVQQFKKFENKFIPENIDYDEIKGLRIEANQKLKKIRPISIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKL 620
           I G++PA +++LL+Y++K   + 
Sbjct: 604 ISGVSPADISVLLVYLEKKHREK 626


>gi|121592462|ref|YP_984358.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acidovorax sp. JS42]
 gi|205831484|sp|A1W207|MNMG_ACISJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120604542|gb|ABM40282.1| glucose inhibited division protein A [Acidovorax sp. JS42]
          Length = 661

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/646 (45%), Positives = 395/646 (61%), Gaps = 27/646 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQDFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRAVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFM--- 229
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM   
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGQVPVFSFMAHA 241

Query: 230 --TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
                +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +
Sbjct: 242 YGGAAMHPRQVPCWITHTNARTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFAD 301

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +  HQIFLEPEGL T   YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +
Sbjct: 302 KESHQIFLEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMHGLENAHILRPGYAIEYDYFD 361

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L  + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +   +     +R ++Y
Sbjct: 362 PRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGVGAWVPARDEAY 421

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++ 
Sbjct: 422 LGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRK 481

Query: 468 IQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
               +     LKS  +  +NL    +  +  K        ++ L  PD     L ++   
Sbjct: 482 RDAVSRETERLKSTWVNPRNLPTVEAERVLGKAIEHEYNLFDLLRRPDVGYDALTTMDGG 541

Query: 525 -----------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                        + S+ VIE+++I + YA Y  RQ  E +     EK  +P+D DY  +
Sbjct: 542 KYASEAVSRETLGELSASVIEQVEIAAKYAGYIDRQRDEVQRAAHFEKLRLPEDLDYMQV 601

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ALS E+++KL   +P  L QAS+I G+TPAA++LL++++KK   K
Sbjct: 602 AALSIEVRQKLQKHRPETLGQASRISGVTPAAISLLMVHLKKGGFK 647


>gi|20807573|ref|NP_622744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter tengcongensis MB4]
 gi|22095718|sp|Q8RAT8|MNMG1_THETN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 1; AltName: Full=Glucose-inhibited division
           protein A 1
 gi|20516110|gb|AAM24348.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Thermoanaerobacter tengcongensis MB4]
          Length = 633

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 389/623 (62%), Gaps = 5/623 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG ST         I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVCVVGLGHAGSEAALASARLGLSTVGFATNLDAIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+
Sbjct: 67  LGGQMAINTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQMNMKHTLERQENLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG++   +G  G  P++ L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGEVDFESGPSGLFPASELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTP R+D ++I + K E Q  DE + PFSFM DKI   Q+ C +T 
Sbjct: 187 ALKRLGFKLMRFKTGTPPRVDKRSIDFSKMEIQPGDEVITPFSFMHDKIEIEQMPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +NI  + +++G I   G RYCPSIEDK+V+F  R  HQIF+EPEG +T  
Sbjct: 247 TNEKTHKIIRDNIHRAPLFTGAITGVGVRYCPSIEDKVVKFPHRERHQIFIEPEGRDTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+K I GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKWIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKILNKPPVVLDRSQAYIGILIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG ++G + E R ++F +   +       L ++++ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMRRLSTVMVR 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  +      +    Y  L  P+   ++   + PD        V E++ I  
Sbjct: 487 PTEEVNNFLISRGSTPLVSGVDLYTLLKRPEVDYKSTKFLDPDRPDDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS+I G
Sbjct: 547 KYEGYILKQLRQVEQFKAMENKKIPEDIDYYQISGLSNEAKEKLSKIRPTSVGQASRISG 606

Query: 601 MTPAALNLLLIYIKK-NTVKLNE 622
           ++PA +++LLIY+++    K NE
Sbjct: 607 VSPADISVLLIYLQQMRKKKSNE 629


>gi|326562695|gb|EGE12997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 103P14B1]
 gi|326574202|gb|EGE24150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis 101P30B1]
 gi|326574987|gb|EGE24916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moraxella catarrhalis O35E]
          Length = 632

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/626 (47%), Positives = 396/626 (63%), Gaps = 8/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EA   AA++GA+T LITH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 10  KTFDVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NL + Q  
Sbjct: 70  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLTIFQQS 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E     ++V      +    VVLT+GTFL GVIH+G      GR GD P+  L 
Sbjct: 130 VDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLA 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +     GRLKTGTPAR+D +T+ +     Q  D  L   S+M D  +  RQI C I
Sbjct: 190 DRLRELKLPVGRLKTGTPARIDARTVDFSVMTVQSGDTPLPVMSYMGDVAMHPRQINCYI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 250 THTNERTHEIIRANLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 310 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDA 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+AR +         R ++Y+GV++DDL + G  E
Sbjct: 370 LYFAGQINGTTGYEEAAAQGLLAGLNAARMALDEPSWVPQRHEAYLGVLVDDLITHGTKE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R  RF++ ++      + LK + 
Sbjct: 430 PYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIW 489

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N               K  +  + L  P+ +  ++  +       S+ V E+++I 
Sbjct: 490 ATPNNAIGQDFMANTGEILTKENSLLDLLKRPNIAFDDIAKV--SDSTVSAKVGEQIEIS 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E +++K  E  L+P DFDY S+  LSNE+ +KLS ++P  L QAS+I 
Sbjct: 548 VKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLGQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+TPAA++LL + IKK  +K  + V+
Sbjct: 608 GVTPAAVSLLAMTIKK--LKKTQAVM 631


>gi|228474143|ref|ZP_04058880.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis SK119]
 gi|314935197|ref|ZP_07842550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271838|gb|EEK13175.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis SK119]
 gi|313656532|gb|EFS20271.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus hominis subsp. hominis C80]
          Length = 625

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/624 (45%), Positives = 391/624 (62%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++Q
Sbjct: 61  IDALGGQMAKAIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  +     +      VV+TTGTFLRG I +G +K  +G     PS S
Sbjct: 121 GMVDELLIENDEVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNDRTHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLATIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  LG I E R  RF    Q+       L ++
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDIGYDLGMISEERYARFNDKRQQIQDEIDRLSNI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ +   +  I  +  +    V E++
Sbjct: 481 RIKPNEHTQSVIEAHGGSRLKDGI--LAIDLLRRPEMTYNTILEILEETHQLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|241766013|ref|ZP_04763934.1| glucose inhibited division protein A [Acidovorax delafieldii 2AN]
 gi|241364012|gb|EER59268.1| glucose inhibited division protein A [Acidovorax delafieldii 2AN]
          Length = 660

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/647 (45%), Positives = 394/647 (60%), Gaps = 23/647 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL     +     GRLKTGTP R+DG++I + K E+Q  D             FSFM   
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKCEEQPGDGMPGGVNEGTVPVFSFMGSA 241

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ H
Sbjct: 242 TMHPKQMPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP +IQ+  +R++PGLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDIQYDLVRSMPGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV+
Sbjct: 362 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGDAPWLPGRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEVGRQMGLVDDARWNAFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
           +     LK+  +  +NL    S  +  K        +E L  PD S  NL S+       
Sbjct: 482 SRETERLKATWVNPRNLPAAESERVLGKSIEHEYNLFELLRRPDVSYANLMSLDGGKYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                      +  V+E+++I + YA Y  RQ  E +     EK  +P D DY  + ALS
Sbjct: 542 SGVSRETLGDLTEPVLEQVEIAAKYAGYIDRQKGEVERAAHFEKLRLPPDLDYMQVTALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
            E ++ L+  +P  L  AS+I G+TPA+++LL++++KK   K   + 
Sbjct: 602 IEARQVLNRHRPETLGHASRITGITPASISLLMVHLKKGGFKEFAVA 648


>gi|270264085|ref|ZP_06192352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Serratia odorifera 4Rx13]
 gi|270041734|gb|EFA14831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Serratia odorifera 4Rx13]
          Length = 629

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 394/619 (63%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS SL  
Sbjct: 126 EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGDPPSISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI +     Q  D  +  FSFM +   +  Q+ C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTIDFSVLAPQHGDTPIPVFSFMGNANQHPEQMACYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHDVIRNNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  +Y+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYANEDEGWSPRRDQAYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF++ ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDARWARFSEKLEHIEQERQRLRDIWM 485

Query: 484 TS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
               +N+   +   K    +     E L  P+     L ++   A     +   E+++I+
Sbjct: 486 HPHAENVEQVNALLKAPLSREANGEELLRRPEMDYALLTTVAAFAPPLVDTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYEGYIARQQEEIEKQQRNENTVLPLDLDYQQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LLI++KK  +
Sbjct: 606 GITPAAISILLIWLKKQGL 624


>gi|24376230|ref|NP_720274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella oneidensis MR-1]
 gi|81170576|sp|Q8E8A9|MNMG_SHEON RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24351293|gb|AAN57717.1|AE015908_2 glucose-inhibited division protein A [Shewanella oneidensis MR-1]
          Length = 629

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 385/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q  + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNILQNQANLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +V Q       S VVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QAVDDIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +     GRLKTGTP R+D  TI + +  +Q  D  L   SFM D   +  QI C
Sbjct: 183 LAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGDTPLPVMSFMGDVSHHPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 WITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDKSSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 TTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDPRDLKNSLETKTI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEA AQGL+AG+N++ +    +  C  R ++YIGV++DDL++ G 
Sbjct: 363 NGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYIGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ ++        L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKMESIELELQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++        +  +  E L  P+     L  I          L  E++
Sbjct: 483 QWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYNKLMQIEGFGPGLADPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P + DY  +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSNEVIAKLNSHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGITPAAISILLVHLKKRGL 624


>gi|120608762|ref|YP_968440.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acidovorax citrulli AAC00-1]
 gi|166221316|sp|A1TI78|MNMG_ACIAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120587226|gb|ABM30666.1| glucose inhibited division protein A [Acidovorax citrulli AAC00-1]
          Length = 655

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/642 (45%), Positives = 393/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGSRTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   + Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAITQVGIRFRARTVVLTAGTFLDGKIHVGLNNYSAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFM-TD 231
           SL     +     GRLKTGTP R+DG++I + + E+Q  D             FSFM + 
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRSIDFSQCEEQPGDGMPGGVNEGTLPVFSFMGST 241

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ H
Sbjct: 242 AMHPRQVPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T   YPNGIST+LP ++Q+  +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTHEFYPNGISTSLPFDVQYDLVRSMRGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
               ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R ++Y+GV+
Sbjct: 362 KSNFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGESAWLPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           ++DL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F++     
Sbjct: 422 VNDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVDDARWDAFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
                 LKS  +  +NL    S  +  K        ++ L  PD +   L  +       
Sbjct: 482 ARETERLKSTWVNPRNLPAEESARVLGKSIEHEYNLFDLLRRPDVTYDALTGMDGGKYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                    + S+ VIE+++I + YA Y  RQ  E +   + E   +P++ DY  + ALS
Sbjct: 542 TAVSRETLGELSAPVIEQVEIAAKYAGYIDRQKDEVQRAFYYENLQLPQELDYMQVAALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++KL   +P  L QAS+I G+TPAA++LLL+++KK   +
Sbjct: 602 IEVRQKLQKHRPETLGQASRISGVTPAAVSLLLVHLKKGGFR 643


>gi|330505867|ref|YP_004382736.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Pseudomonas mendocina NK-01]
 gi|328920153|gb|AEB60984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas mendocina NK-01]
          Length = 631

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 386/617 (62%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 68  GGAMATATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAVREILENQANLWIFQQAAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +V Q       ++VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 128 DLIVENAEVKGVVTQMGLRFHANSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSIALAHR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITR 244
             +     GRLKTGTP R+DG+++ +    +Q  D      SF+  +    +QI C IT 
Sbjct: 188 LRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPTPLMSFLGKREHQPKQISCWITH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T  
Sbjct: 248 TNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGLTTHE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I GLF
Sbjct: 308 LYPNGISTSLPFDVQLQVVRSIRGMENAHIMRPGYAIEYDYFDPRDLKYSLETKVIGGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAGAQGLLAGCNAALRAQGKEAWCPRRDEAYIGVLVDDLITLGTQEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS  + 
Sbjct: 428 RMFTSRAEYRLILREDNADLRLTEKGRELGLVDDERWAAFEAKREGIAKEEQRLKSTWVR 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  +I+ +              L+ P+     L  +  +A    + V E+++I++ 
Sbjct: 488 PGTPQGDAIAARFGTPLTHEYNLLNLLARPEIDYATLVELT-EAPVVDNQVAEQVEIKTK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E  +++  E   +P+D DYS++  LS E++ KL   +P  L QA +I G+
Sbjct: 547 YAGYIDRQQDEIAKLRASEDTKLPEDLDYSAISGLSKEIQFKLGNTRPATLGQAGRIPGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLLI++KK + 
Sbjct: 607 TPAAISLLLIHLKKRSA 623


>gi|315659999|ref|ZP_07912857.1| glucose inhibited division protein A [Staphylococcus lugdunensis
           M23590]
 gi|315494900|gb|EFU83237.1| glucose inhibited division protein A [Staphylococcus lugdunensis
           M23590]
          Length = 626

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/624 (45%), Positives = 397/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MTQNYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  + +LD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEAHLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N++  +     +      VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDDLIIEDNVVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDIGYELGMISEARYARFNEKRQQIQDEIDRLTHI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ +   +  I  +A +    V E++
Sbjct: 481 RIKPNAHTQSVIEAHGGSQLKDGI--LAIDLLRRPEMTYDTILEILGEAHQLPEAVAEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP++ DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEQKKIPEELDYSKVDSLATEAREKLAKVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|54298881|ref|YP_125250.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila str. Paris]
 gi|81170551|sp|Q5X0Z8|MNMG_LEGPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53752666|emb|CAH14101.1| hypothetical protein lpp2948 [Legionella pneumophila str. Paris]
          Length = 624

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 407/621 (65%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEQLYDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q
Sbjct: 63  IDALDGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L  S    D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++     + Q + C
Sbjct: 183 LSKSLRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL
Sbjct: 243 HITHTTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R + F+K  +     ++LL +
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWESFSKKREAIESTQALLHN 482

Query: 481 LV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQ 537
               +   +L   ++          A EFL  P+ + Q+L  +   +  +    + E+++
Sbjct: 483 SWVRVHHNDLFKEAL-LNPMQHDCRAAEFLKRPEINYQHLLMMDDLNLPELPQEITEQIE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +
Sbjct: 542 IQNKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAAL+LLL+++KK+ +
Sbjct: 602 ISGVTPAALSLLLVHLKKSRL 622


>gi|319790744|ref|YP_004152384.1| glucose inhibited division protein a [Variovorax paradoxus EPS]
 gi|315593207|gb|ADU34273.1| glucose inhibited division protein A [Variovorax paradoxus EPS]
          Length = 652

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/634 (47%), Positives = 393/634 (61%), Gaps = 14/634 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPEEFDVIVVGGGHAGTEAALAAARMGAKTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLSLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIAFRARTVVLTAGTFLDGRIHVGLDNYQAGRAGDPPAI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE------RLIPFSFMTD-KI 233
           SL     +     GRLKTGTP RLDG++I + K  +Q  D        +  FSFM    +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRLDGRSIDFSKCTEQPGDGMPGGAGPMPVFSFMGRADM 241

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             RQ+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQI
Sbjct: 242 HPRQMACWITHTNARTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQI 301

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL T+  YPNGIST+LP +IQ+Q +R++PGLE  +I+RPGYAIEYDY +P+EL  
Sbjct: 302 FLEPEGLTTNEYYPNGISTSLPFDIQYQLVRSMPGLENAHILRPGYAIEYDYFDPRELKS 361

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + ET+ + GLF AGQINGTTGYEEAAAQGL AGIN+A +    D     R ++Y+GV++D
Sbjct: 362 SFETRSVKGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEDAWLPRRDEAYLGVLVD 421

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G KLG + + R   F++     + 
Sbjct: 422 DLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRKLGLVDDARWDAFSRKRDAVSR 481

Query: 474 LRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----AR 526
               LKS+ +  +NL    S  +  K         + L  PD + + L S+       + 
Sbjct: 482 ETERLKSIWVNPRNLPAAESERVLGKAIEHEYNLADLLRRPDVNYETLMSLDGGKYSASS 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             S   IE+++I + Y+ Y  RQ  E +     E   +P DFDY  + ALS E+++KL  
Sbjct: 542 ALSETEIEQIEISAKYSGYIERQHDEVERAAHFENLRLPADFDYGQVKALSFEVRQKLDK 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            +P  L  AS+I G+TPAA++LL+I+++K   K 
Sbjct: 602 HRPETLGLASRISGVTPAAISLLMIHLRKGGHKA 635


>gi|254478035|ref|ZP_05091419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
 gi|214036039|gb|EEB76729.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
          Length = 633

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/623 (43%), Positives = 390/623 (62%), Gaps = 5/623 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG ST         I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVCVVGLGHAGSEAALASARLGLSTVGFATNLDAIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+
Sbjct: 67  LGGQMAINTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQMNMKHTLERQENLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N ++ +V +  ++ +C   ++TTGTFL+G + IG++   +G  G  P++ L  
Sbjct: 127 VDILVKDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGEVDFESGPSGLFPASELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTP R+D ++I + K E Q  DE + PFSFM DKI   Q+ C +T 
Sbjct: 187 ALKRLGFKLMRFKTGTPPRVDKRSIDFSKMEIQPGDEVITPFSFMHDKIEIEQMPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +NI  + +++G I   G RYCPSIEDK+V+F  R  HQIF+EPEG +T  
Sbjct: 247 TNEKTHKIIRDNIHRAPLFTGAITGVGVRYCPSIEDKVVKFPHRERHQIFIEPEGRDTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+K I GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKWIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKILNKPPVVLDRSQAYIGILIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG ++G + E R ++F +   +       L ++++ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMRRLSTVMVR 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  +      +    Y  L  P+   ++   + PD        V E++ I  
Sbjct: 487 PTEEVNNFLISRGSTPLVSGVDLYTLLKRPEVDYKSTKFLDPDRPDDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS+I G
Sbjct: 547 KYEGYILKQLRQVEQFKAMENKKIPEDIDYYQISGLSNEAKEKLSKIRPTSVGQASRISG 606

Query: 601 MTPAALNLLLIYIKK-NTVKLNE 622
           ++PA +++LLIY+++   +K NE
Sbjct: 607 VSPADISVLLIYLQQMKKMKSNE 629


>gi|148361201|ref|YP_001252408.1| glucose inhibited division protein A [Legionella pneumophila str.
           Corby]
 gi|296108537|ref|YP_003620238.1| glucose inhibited division protein A [Legionella pneumophila
           2300/99 Alcoy]
 gi|166222940|sp|A5II62|MNMG_LEGPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148282974|gb|ABQ57062.1| glucose inhibited division protein A [Legionella pneumophila str.
           Corby]
 gi|295650439|gb|ADG26286.1| glucose inhibited division protein A [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611762|emb|CBX01470.1| hypothetical protein LPW_31581 [Legionella pneumophila 130b]
          Length = 624

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 406/621 (65%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEQLYDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q
Sbjct: 63  IDALDGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L  S    D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++     + Q + C
Sbjct: 183 LSKSLRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL
Sbjct: 243 HITHTTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL +
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLHN 482

Query: 481 LV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQ 537
               +   +L   ++          A EFL  P+ + Q+L  +   +  +    + E+++
Sbjct: 483 SWVRVHHNDLFKEAL-LNPMQHDCRAAEFLKRPEINYQHLLMMDDLNLPELPQEITEQIE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +
Sbjct: 542 IQNKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAAL+LLL+++KK+ +
Sbjct: 602 ISGVTPAALSLLLVHLKKSRL 622


>gi|37524081|ref|NP_927425.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81170566|sp|Q7NA86|MNMG_PHOLL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|36783504|emb|CAE12344.1| Glucose inhibited division protein A [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 629

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 392/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EQFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRMALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + ++  V +     R   VVLT GTFL G IHIG      GR G  P+ SL 
Sbjct: 125 VEDLIVENDTVTGAVTRMGLKFRAKAVVLTVGTFLDGKIHIGLENYSGGRAGGPPAISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +      RLKTGTP R+D +TI + +  +Q  D     FSF+ + K   +QI C I
Sbjct: 185 QRLRELPLRVNRLKTGTPPRIDARTIDFSQLTQQLGDNPTPVFSFLGNVKQHPQQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL +
Sbjct: 245 THTNEKTHDVIRNNLDRSPMYTGIIEGIGPRYCPSIEDKVMRFADRDAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P++L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRDLKQTLESKFIHG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +++ +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYASEEESWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R + + + ++     R  L+++ 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEKGRELGLVDDSRWEHYCRKLEMVEQERQRLRNIW 484

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +   + +   I+        K     + L  P+ + + L S+   +         ++++I
Sbjct: 485 IHPNSNNLNDINNILKMPLSKEANGEDLLRRPEMNYKLLTSLPLFSPSLEEPQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIEKQLRNENTSLPVDLDYRQISGLSNEVVAKLNDHKPSSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA+++LL+++KK  +
Sbjct: 605 SGVTPAAISILLVWLKKQGL 624


>gi|158321889|ref|YP_001514396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkaliphilus oremlandii OhILAs]
 gi|205831486|sp|A8MKR8|MNMG_ALKOO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158142088|gb|ABW20400.1| glucose inhibited division protein A [Alkaliphilus oremlandii
           OhILAs]
          Length = 630

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/622 (42%), Positives = 375/622 (60%), Gaps = 3/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEAA   A++G ST ++T     I  + CNP+IGG GKGHLVREIDA
Sbjct: 8   NYDVVVVGAGHAGCEAALATARMGYSTMMLTMSLDAIAMLPCNPSIGGTGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y + M++ + ++ NL ++QGEV
Sbjct: 68  LGGEMGLNIDKTFIQSRMLNTAKGPAVHSLRAQADKTRYHIEMKKMLENEPNLHLLQGEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  +V +  ++     V+L TG +L+  I +G++   +G  G  P+  L  
Sbjct: 128 VDIIVEDNTVKGVVTKTGAIYYGKAVILATGVYLKSKIFMGEVNYESGPNGLFPALYLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                  +  R KTGTPAR+   +I + K   Q  DE ++PFSFM + +   QI C +TR
Sbjct: 188 KLKALGCNMRRFKTGTPARIHKDSIDFSKVSVQIEDEEIVPFSFMNEALEKEQIPCWLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  SA+Y GDI+S GPRYCPSIEDKIVRF E+  HQIF+EPEG  T  
Sbjct: 248 TTEETHRIIKENLGRSAMYRGDIESTGPRYCPSIEDKIVRFSEKPSHQIFIEPEGAETKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST+LPEE+Q Q +R++ GLE   I+RP YAIEYD I+P +L  +LE K I+ LF
Sbjct: 308 MYIQGFSTSLPEEVQVQMVRSVIGLENAIIMRPAYAIEYDCIDPTQLKASLEVKHINNLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K    D     R+++YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGSSGYEEAAAQGLMAGINAVLKIRGEDPFILDRSEAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  LG + E R +R+    +        LK+  ++
Sbjct: 428 RMMTSRSEYRLVLRQDNADLRLTEKGYALGLVKEDRYERYLLKKEHIKNEMERLKTTNVS 487

Query: 485 SK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESS 541
               N               + Y+ L  P+ + +N+  I              + ++   
Sbjct: 488 PTIANPVLERAESTPIKVGMSLYDLLKRPELTYENIKEIDGTRPQDLMKDAQFQCEVMIK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + + +D DY+ +  L  E ++KL+ ++P ++ QAS+I G+
Sbjct: 548 YEGYIEKQLRQIDQFKKLENKKLREDIDYNEIDGLRIEARQKLNAIRPLSVGQASRISGV 607

Query: 602 TPAALNLLLIYIKKNTVKLNEI 623
           +PA +++LLIY+++   K  E+
Sbjct: 608 SPADISVLLIYLEQKRRKKGEV 629


>gi|54295714|ref|YP_128129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila str. Lens]
 gi|81170553|sp|Q5WSS4|MNMG_LEGPL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53755546|emb|CAH17045.1| hypothetical protein lpl2802 [Legionella pneumophila str. Lens]
          Length = 624

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 406/621 (65%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEQLYDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q
Sbjct: 63  IDALDGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L  S    D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++     + Q + C
Sbjct: 183 LSKSLRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGTASDHPQQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL
Sbjct: 243 HITHTTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A +    D  C  R ++YIGV+IDDL + G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALQIKGQDLWCPRRDEAYIGVLIDDLITCGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL +
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLHN 482

Query: 481 LV--LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQ 537
               +   +L   ++          A EFL  P+ + ++L  +   +  +    + E+++
Sbjct: 483 SWVRVHHNDLFKEAL-LNPMQHDCRAAEFLKRPEINYRHLLMMDDLNLPELPQEITEQIE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E ++++  E  ++P+  DY+ +  LS+E+ +KL+ +KP +L QA +
Sbjct: 542 IQNKYAGYIDRQQQEIEKLRKHENTMLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAAL+LLL+++KK+ +
Sbjct: 602 ISGVTPAALSLLLVHLKKSRL 622


>gi|329732221|gb|EGG68571.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 625

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIENDEVKGVRTNIGTEYHSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|167462791|ref|ZP_02327880.1| glucose inhibited division protein A [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381367|ref|ZP_08055370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           GidA-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154943|gb|EFX47214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           GidA-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 631

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/615 (43%), Positives = 376/615 (61%), Gaps = 4/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCE+A  AA++G ST L+T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   EYDVIVIGAGHAGCESALAAARMGCSTLLLTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+  M+  I  Q NL + QG V
Sbjct: 67  LGGEMGRNIDKTYIQMRMLNTGKGPAVHALRAQADKFLYQQTMKETIEKQPNLTMRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ +  +      +VLTTGT+LRG + +G+L   +G     PS  L  
Sbjct: 127 EELIVEAGVCKGVITKSGAEYYGKAIVLTTGTYLRGKVIMGELMYESGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGIT 243
           S     F+  R KTGTP R+  ++I + KTE Q  D     FS+ T + +   Q+ C +T
Sbjct: 187 SLRNLGFELVRFKTGTPPRVHKESIDFSKTEIQPGDAEPEFFSYETREPVKEEQLPCWLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ ET  +I EN+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T 
Sbjct: 247 YTSAETQELITENLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGRYTS 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+ST++PE++Q   +RTIPGLE V ++R GYAIEYD + P +L PTLETK + GL
Sbjct: 307 EYYVQGLSTSMPEDVQLSMLRTIPGLECVEMMRTGYAIEYDAVIPTQLKPTLETKLVEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+ARK    + I   R++ YIGV+IDDL +KG  EP
Sbjct: 367 FTAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPIILDRSEGYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLTPIG ++G I E R + F     +       L++  +
Sbjct: 427 YRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLITEERYQAFLNKKGKVEQEIERLRTTKV 486

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +      ++     Q          L  P     ++  + P   +    + E+++I+ 
Sbjct: 487 RPEAFIQDLLAEAGTVQLNNAVDLLSLLRRPQIMYSHIEQMSPSPLELDGEMKEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y+ +Q+ + + +K  EK+LIP D  Y  +  ++ E K+KL+ ++P ++ QAS+I G
Sbjct: 547 KYSGYSEKQLAQVERLKKMEKKLIPDDIVYEEIHGIATEAKQKLAKIRPISIGQASRISG 606

Query: 601 MTPAALNLLLIYIKK 615
           ++PA +++LL+Y++ 
Sbjct: 607 VSPADISILLVYLEH 621


>gi|71279490|ref|YP_271685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Colwellia psychrerythraea 34H]
 gi|81170535|sp|Q47U38|MNMG_COLP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71145230|gb|AAZ25703.1| glucose inhibited division protein A [Colwellia psychrerythraea
           34H]
          Length = 629

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/622 (46%), Positives = 384/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+GGGHAG EA+  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQESYDVIVVGGGHAGTEASLAAARMGCKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLM    D + IQFR LN  KGPAVR  R QADR LYR  ++  + +QENL + Q
Sbjct: 63  IDALGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNTLENQENLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +  Q     +  +VVLT GTFL G+IHIG      GR GD  S +
Sbjct: 123 QPCDDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L        F   RLKTGTP RLD +++ +   E+Q  D     FSFM  +  +  QI C
Sbjct: 183 LAAKMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGDTPSPVFSFMGSQADHPEQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH+ I + +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 FITHTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADKSSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VYPNGIST+LP ++Q   +R+I G E   I RPGYAIEYDY +P++L  +LE+K +
Sbjct: 303 TTHEVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDPRDLKQSLESKFV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEA AQGL+AG N+A +  + D     R  +Y+GV+IDDL + G 
Sbjct: 363 QNLYFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYMGVLIDDLATLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ R +RF + ++     R  L+S
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKMENVELERQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     I+        K  +  + +  P+ +  +L  I         S   E++
Sbjct: 483 TWVQKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLGPAIEDSQASEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ YA Y  RQ+ E  + K  E   IP+DFDY  +  LSNE+  KL    P  + +AS
Sbjct: 543 EIQTKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSNEVVAKLKDACPETIGKAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGL 624


>gi|187476515|ref|YP_784539.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bordetella avium 197N]
 gi|123515352|sp|Q2L2T3|MNMG_BORA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115421101|emb|CAJ47585.1| glucose inhibited division protein A [Bordetella avium 197N]
          Length = 637

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/625 (48%), Positives = 400/625 (64%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   HEFDVIVVGGGHAGTEAALAAARSGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +QENL + Q  
Sbjct: 65  ALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRHRLENQENLWLFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R   VVLT GTFL G+IH+G      GR GD P+NSL 
Sbjct: 125 VEDLIVEGDKVVGAVTQIGLKFRGRAVVLTAGTFLNGLIHVGLQHYSGGRAGDPPANSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECG 241
               +     GRLKTGTP R+DG+TI +   E+Q  D   IP FSFM    +  RQ+ C 
Sbjct: 185 QRLKELKLPQGRLKTGTPPRIDGRTINYSVLEEQPGDLDPIPVFSFMGSAALHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL+
Sbjct: 245 ITHTNERTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKPSHQIFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  +LETK IS
Sbjct: 305 THEVYPNGVSTSLPFDVQYELIHSLPGLEHAHILRPGYAIEYDYFDPRGLKSSLETKAIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+AR ++  +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAARYASDREAWVPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           L+S 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRELGLVDDIRWDVFNRKRDAIQAEVQRLQST 484

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
            +  +      + ++  K   +     + L  P+ S + L      A +           
Sbjct: 485 WVNPRLLPEEPAQALLGKAIEREYALADLLKRPNISYEALMQARNGAGELLAGPGLLGDD 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQIKYAGYIERQRDEVQKHVVHEQQAIPADIDYDAVSSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TVGQAARISGVTPAAVSLLLIHLKR 629


>gi|239993739|ref|ZP_04714263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas macleodii ATCC 27126]
          Length = 633

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/620 (46%), Positives = 392/620 (63%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DVIV+GGGHAG EAA  AA++GA+T L+TH   TIG MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EAFDVIVVGGGHAGTEAALAAARMGANTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +QENL + Q  
Sbjct: 65  ALGGAMALAIDKGGIQFRTLNSSKGPAVRATRAQADRTLYKNAIRDIVENQENLTLFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +V Q     +  +VVLT GTFL G IHIG      GR GD PS +L 
Sbjct: 125 VDDLIVENDQVCGVVTQMGLKFKAKSVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +      F   RLKTGTPARLD +++ +   + Q  D     FSFM D+  +  QI C I
Sbjct: 185 DRLRALPFRVDRLKTGTPARLDARSLDFSVMQPQPGDNPTPVFSFMGDRTMHPTQIPCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGLN+
Sbjct: 245 THTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKTSHQIFVEPEGLNS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q   +R+I G E  +I+RPGYAIEYD+ +P++L  TLETK I G
Sbjct: 305 IEVYPNGISTSLPFDVQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLETKFIRG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGLVAG N+A +  + D +   R  +Y+GV+IDDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLVAGANAALQVQEKDPMILRRDQAYMGVLIDDLATMGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R  +F   ++        L+   
Sbjct: 425 PYRMFTSRAEYRLLLREDNADSRLTAMGREIGLVDDARWAKFNDKMEAVESELQRLRGQW 484

Query: 483 LTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           +   + ++  ++        +  +  E +  P+ +   L  I          +  E+++I
Sbjct: 485 IHPDHAATPELNTMLKNPVSREHSLEELIRRPEMTYGQLMEIESVGPGLEDPVAAEQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  RQM E  + +  E  L+P D D+S +  LSNE+  KL+  +P  + +AS+I
Sbjct: 545 QIKYAGYIARQMDEIAKTQRHENTLLPVDMDFSKISGLSNEVVAKLTEARPETIGKASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++LLL+Y+KK+ +
Sbjct: 605 SGITPAAISLLLVYLKKHGM 624


>gi|330815034|ref|YP_004358739.1| Glucose inhibited division protein A [Burkholderia gladioli BSR3]
 gi|327367427|gb|AEA58783.1| Glucose inhibited division protein A [Burkholderia gladioli BSR3]
          Length = 656

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/627 (45%), Positives = 389/627 (62%), Gaps = 15/627 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRSRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL +
Sbjct: 126 DDLIVEGERVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNHTGGRAGDPAAVSLSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG++I + K E+Q  D   +P FSF+   ++  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRSIDFSKLEEQPGDLDPVPVFSFLGRVEMHPRQMPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLDLVHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKAIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R + + D  C  R ++Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDEAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++     +     L+S  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDARWDAFSRKRDAVSRETERLRSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +               +     
Sbjct: 486 VTPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYAGVCGLRGGECGPAEPLAEDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P+  DY+ +  LS E ++KL+  +P
Sbjct: 546 AQIEEQIEIGIKYQGYIERQAGEIERNGAHENTRLPEGIDYAEVRGLSFEARQKLNQHRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN 616
             + QAS+I G+TPAA++LL++++K+ 
Sbjct: 606 ETIGQASRISGITPAAISLLMVHLKRG 632


>gi|222152197|ref|YP_002561357.1| glucose-inhibited division protein A [Macrococcus caseolyticus
           JCSC5402]
 gi|259495848|sp|B9E8Z3|MNMG_MACCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|222121326|dbj|BAH18661.1| glucose-inhibited division protein A [Macrococcus caseolyticus
           JCSC5402]
          Length = 624

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/624 (44%), Positives = 387/624 (62%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAG EA   +A+ GA T ++T    ++  M CNP++GG  KG +VRE
Sbjct: 1   MEQKYDVIVVGAGHAGVEAGLASARKGAKTLMLTINLDSVAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I +Q+NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKSVIEAQDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   +  +     +      VVLTTGTFLRG I +G +K  +G     PS  
Sbjct: 121 GMVERLIIEDGKVLGVETVIGTTYLADAVVLTTGTFLRGEIILGNIKYSSGPNHQMPSIK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  FD  R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADHLREIGFDIVRFKTGTPPRVNSDSIDYSKTEIQPGDDLPRAFSYETTEFIMDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQIFLEPEG N
Sbjct: 241 LTYTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQIFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G+ST+LPE +Q Q ++TIPGLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TKEVYVQGLSTSLPEHVQLQMLKTIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIQ 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAA QGL+AGIN+A K    D +   R ++YIGV+IDDL +KG  
Sbjct: 361 GLYTAGQINGTSGYEEAAGQGLMAGINAAAKVLGHDELILGRHEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R+ LR DNAD RLT IG   G I E R  RF       +   + L  +
Sbjct: 421 EPYRLLTSRAEHRLLLRHDNADLRLTEIGYNAGLIDEFRYSRFNNKKAAISEEINRLSQI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + S   +  +DG    A + L  P+    ++ ++  +       V E++
Sbjct: 481 RIKPNEKTQSMIESRGGTPLKDGI--LAIDLLRRPEMDYASVVALIEEQGMIDESVQEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E + IP++ DY  + +L+ E +EKL  +KP ++ QAS
Sbjct: 539 EIQTKYEGYIQKSLQQVEKVKRMENKKIPENIDYDDIHSLATEAREKLKEVKPLSIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIYI++  +K 
Sbjct: 599 RISGVNPADISILLIYIEQGKIKR 622


>gi|257424193|ref|ZP_05600622.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426870|ref|ZP_05603272.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429506|ref|ZP_05605893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432153|ref|ZP_05608516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435114|ref|ZP_05611165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M876]
 gi|282912911|ref|ZP_06320703.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922539|ref|ZP_06330229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C101]
 gi|293497964|ref|ZP_06665818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511554|ref|ZP_06670248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M809]
 gi|293550163|ref|ZP_06672835.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273211|gb|EEV05313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276501|gb|EEV07952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279987|gb|EEV10574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283032|gb|EEV13164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257285710|gb|EEV15826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314760|gb|EFB45146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C101]
 gi|282323011|gb|EFB53330.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919210|gb|EFD96286.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096895|gb|EFE27153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465512|gb|EFF08044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus M809]
          Length = 625

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQVIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|295429294|ref|ZP_06821916.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295127053|gb|EFG56697.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 625

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVDRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|52843084|ref|YP_096883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81170552|sp|Q5ZRJ2|MNMG_LEGPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52630195|gb|AAU28936.1| glucose inhibited division protein A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 624

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/620 (48%), Positives = 404/620 (65%), Gaps = 3/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  AA+LG  T L+TH    +G MSCNPAIGG+GKGHLV+E
Sbjct: 3   LEQLYDVIVVGGGHAGTEAALAAARLGVKTLLLTHNIDLLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M + AD AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ SQ NL + Q
Sbjct: 63  IDALDGAMAKAADQAGIQFRILNASKGPAVRATRAQADRVLYRKAIRTQLQSQANLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++ +V Q    ++   VVLT GTFL G IH+G  +   GR GD PS +
Sbjct: 123 QAVDDLKIEGGLVTGVVTQMGLTLKARAVVLTVGTFLGGKIHVGMNQYAGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L  S    D   GRLKTGTP R+D +TI + +  +Q  D  +  FS++     + Q + C
Sbjct: 183 LSKSLRDLDLPVGRLKTGTPPRIDRRTIDFSQMVEQPGDTPVPVFSYLGAASDHPQQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T   TH II  N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL
Sbjct: 243 HITHTTEATHDIIRNNLDKSPMYAGVIEGVGPRYCPSIEDKIVRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP E+Q QF+RTI G E  +I RPGYAIEYDY +P+ L   L+TK I
Sbjct: 303 TTEEIYPNGISTSLPFEVQVQFVRTIKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AG+N+A +    +  C  R ++YIGV+IDDL + G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGIIAGMNAALQIKDQELWCPRRDEAYIGVLIDDLITCGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL-K 479
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG +G+ R   F+K  +     ++LL  
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRQLGLVGDERWDSFSKKREAIESTQALLYN 482

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQI 538
           S V    N       F        A EFL  P+ + Q+L  +   +  +    + E+++I
Sbjct: 483 SWVRVHHNDLFKETLFNPMQHDCRAVEFLKRPEINYQHLLMMDDLNLPELPQEITEQIEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E ++++  E  L+P+  DY+ +  LS+E+ +KL+ +KP +L QA +I
Sbjct: 543 QNKYAGYIDRQQQEIEKLRKHENTLLPETLDYNDVVGLSSEVIQKLNRIKPTSLAQAGRI 602

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAAL+LLL+++KK+ +
Sbjct: 603 SGVTPAALSLLLVHLKKSRL 622


>gi|314934964|ref|ZP_07842323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus caprae C87]
 gi|313652894|gb|EFS16657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus caprae C87]
          Length = 625

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 398/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E+N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEENEVKGVRTNIGTEYRSKAVVVTTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADNLRQLGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKSIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQNEIQRLTDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +   +     + S   S  +DG    A + L  P+ +   +  I  +  +    V E++
Sbjct: 481 RIKPNDHTQSVIESKGGSRLKDGI--LAIDLLRRPEMTYDTILEILEEDHQLPDAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|223043387|ref|ZP_03613433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus capitis SK14]
 gi|222443176|gb|EEE49275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus capitis SK14]
          Length = 625

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/624 (45%), Positives = 396/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVVVTTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADNLRQLGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKSIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQNEIQRLTDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +   +     + S   S  +DG    A + L  P+ +   +  I  +  +    V E++
Sbjct: 481 RIKPNDHTQSVIESKGGSRLKDGI--LAIDLLRRPEMTYDTILEILEEDHQLPDAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|291615447|ref|YP_003525604.1| glucose inhibited division protein A [Sideroxydans lithotrophicus
           ES-1]
 gi|291585559|gb|ADE13217.1| glucose inhibited division protein A [Sideroxydans lithotrophicus
           ES-1]
          Length = 628

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/626 (46%), Positives = 407/626 (65%), Gaps = 5/626 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +DVIVIGGGHAG EAA  +A+ G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+
Sbjct: 4   QKKFDVIVIGGGHAGTEAALASARAGCTTLLLTHNIETLGVMSCNPSIGGIGKGHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q NL + Q 
Sbjct: 64  DALGGAMAAATDEGGIQFRILNASKGPAVRATRAQADRALYKQAIRKRLENQPNLWIFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+  +  +  Q     R  TVVLTTGTFL G++H+G    PAGR GD PS  L
Sbjct: 124 PAEKLILEQGHVVGVQTQLGLSYRAKTVVLTTGTFLSGLVHVGLTNYPAGRAGDPPSIGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECG 241
            ++  +    TGRLKTGTP R+DG++I +   ++Q  D  +  FSFM     + RQ+ C 
Sbjct: 184 AHNLRELGMPTGRLKTGTPPRIDGRSIDYSAMQEQHGDIPVPVFSFMGRAEQHPRQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF  +  HQIFLEPEGL+
Sbjct: 244 ITQTNEQTHEIIRNGLGESPLFTGVIEGVGPRYCPSIEDKITRFAGKTSHQIFLEPEGLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+L  + Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LE+K IS
Sbjct: 304 THEIYPNGISTSLSYDTQLELVRSIKGLENAHITRPGYAIEYDYFDPRGLKTSLESKTIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AG+N+A ++ +L+  C  R ++Y+GV++DDL ++GV 
Sbjct: 364 GLFLAGQINGTTGYEEAAAQGLLAGVNAALQAKELETWCPRRDEAYLGVLVDDLITRGVS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + F    ++       LKS 
Sbjct: 424 EPYRMFTSRAEYRLQLREDNADMRLTETGRKLGLVEDARWQAFEGKREKIARELERLKST 483

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +  +    + +  +  K+  +  + Y+ L  P+ S Q+L ++       +S + E+++I
Sbjct: 484 WVNPRMLDKIDAERVLGKEIEREYSLYDLLRRPEVSYQSLMTLPGMHNPEASGISEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  RQ  E    +  E   +P D DYS++  LS E+++KL+  KP  L QA++I
Sbjct: 544 LAKYHGYIERQHDEIARQEGYETTQLPLDMDYSTVRGLSIEVRQKLNQHKPQTLGQAARI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEIV 624
            G+TPAA++LLL+++K+   K  +  
Sbjct: 604 SGVTPAAISLLLVHLKRG-FKQEKAA 628


>gi|15925701|ref|NP_373235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15928296|ref|NP_375829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus N315]
 gi|21284358|ref|NP_647446.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49484906|ref|YP_042130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49487488|ref|YP_044709.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148269142|ref|YP_001248085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150395224|ref|YP_001317899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156981026|ref|YP_001443285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141512|ref|ZP_03566005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253316837|ref|ZP_04840050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253733842|ref|ZP_04868007.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255007482|ref|ZP_05146083.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793535|ref|ZP_05642514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9781]
 gi|258420937|ref|ZP_05683871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9719]
 gi|258438576|ref|ZP_05689799.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9299]
 gi|258443968|ref|ZP_05692306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A8115]
 gi|258446216|ref|ZP_05694376.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6300]
 gi|258449125|ref|ZP_05697231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6224]
 gi|258454397|ref|ZP_05702365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5937]
 gi|282894276|ref|ZP_06302506.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8117]
 gi|282907044|ref|ZP_06314892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910023|ref|ZP_06317831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912271|ref|ZP_06320067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282918065|ref|ZP_06325815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus D139]
 gi|282927747|ref|ZP_06335361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A10102]
 gi|283767787|ref|ZP_06340702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959481|ref|ZP_06376922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295406861|ref|ZP_06816665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8819]
 gi|296275690|ref|ZP_06858197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297209455|ref|ZP_06925853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245896|ref|ZP_06929758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8796]
 gi|297589204|ref|ZP_06947845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MN8]
 gi|300911479|ref|ZP_07128928.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379945|ref|ZP_07362674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54037191|sp|P64230|MNMG_STAAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|54037192|sp|P64231|MNMG_STAAW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|54041306|sp|P64229|MNMG_STAAM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56748944|sp|Q6G5W5|MNMG_STAAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56748997|sp|Q6GD93|MNMG_STAAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200618|sp|A7X7A7|MNMG_STAA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039360|sp|A6U594|MNMG_STAA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039362|sp|A5IWD6|MNMG_STAA9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|13702668|dbj|BAB43808.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus N315]
 gi|14248486|dbj|BAB58873.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21205802|dbj|BAB96494.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243035|emb|CAG41769.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49245931|emb|CAG44412.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147742211|gb|ABQ50509.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947676|gb|ABR53612.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156723161|dbj|BAF79578.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253728145|gb|EES96874.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787507|gb|EEV25847.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9781]
 gi|257843127|gb|EEV67542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9719]
 gi|257848135|gb|EEV72127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9299]
 gi|257850852|gb|EEV74796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A8115]
 gi|257855042|gb|EEV77985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6300]
 gi|257857558|gb|EEV80453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A6224]
 gi|257863491|gb|EEV86251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5937]
 gi|269942297|emb|CBI50712.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282318350|gb|EFB48710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323967|gb|EFB54283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326089|gb|EFB56394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329943|gb|EFB59464.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590507|gb|EFB95585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A10102]
 gi|282763321|gb|EFC03451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8117]
 gi|283461666|gb|EFC08750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus H19]
 gi|283789073|gb|EFC27900.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285818374|gb|ADC38861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus 04-02981]
 gi|294968326|gb|EFG44351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8819]
 gi|296885916|gb|EFH24851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177261|gb|EFH36514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A8796]
 gi|297577715|gb|EFH96428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MN8]
 gi|300887658|gb|EFK82854.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|302752588|gb|ADL66765.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304341525|gb|EFM07435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312436862|gb|ADQ75933.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312831049|emb|CBX35891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129540|gb|EFT85532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195223|gb|EFU25611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|329315431|gb|AEB89844.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329725763|gb|EGG62242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 625

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|258423241|ref|ZP_05686133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9635]
 gi|257846570|gb|EEV70592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9635]
 gi|323439702|gb|EGA97420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus O11]
 gi|323443275|gb|EGB00892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus O46]
          Length = 625

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MAQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|126667597|ref|ZP_01738566.1| glucose-inhibited division protein A [Marinobacter sp. ELB17]
 gi|126627866|gb|EAZ98494.1| glucose-inhibited division protein A [Marinobacter sp. ELB17]
          Length = 628

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/617 (47%), Positives = 404/617 (65%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGH+G EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHSGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R Q DR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMARATDRAGIQFRVLNGRKGPAVRATRAQTDRILYKAAIREILENQPNLTLFQQSAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q        TVVLTTGTFL G+IHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENERVTGVVTQTGIRFLGKTVVLTTGTFLGGIIHIGMKNHAGGRAGDAPANALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SFM  +  + RQ+ C ITR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARSVDFSVMQQQWGDDPAPVMSFMGSRDEHPRQVCCYITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II      S +++G+I   GPRYCPS+EDK+ RF +++ HQIF+EPEGL T  
Sbjct: 247 TTEETHDIIRSGFDRSPMFTGNIGGVGPRYCPSLEDKVSRFADKSSHQIFVEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +++IPG EK +I+RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQVRAVQSIPGFEKAHIMRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+AR++ + D     R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAARQAQEKDAWYPRRDEAYIGVLVDDLITMGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F    +     RS L+   + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTDSGRELGLVDDERWSKFNAKREAIGTERSRLEGTRVH 486

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +    +    +  G+  T  E L  P+    ++  I  + R   ++V ++++IE  
Sbjct: 487 PNTAAGERANQYLKQPLGRDHTLAELLRRPEIVYAHIADIA-EYRADDAVVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL +++P  + QAS+++G+
Sbjct: 546 YEGYISRQADEIERLRKNENTALPVDLDYGIIGGLSNEIKQKLGVVRPETVAQASRVQGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++ +L+++KK  +
Sbjct: 606 TPAAISQILVHMKKREL 622


>gi|82752289|ref|YP_418030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus RF122]
 gi|123549493|sp|Q2YZB9|MNMG_STAAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|82657820|emb|CAI82275.1| glucose inhibited division protein A [Staphylococcus aureus RF122]
          Length = 625

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|70727674|ref|YP_254590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus haemolyticus JCSC1435]
 gi|81170579|sp|Q4L2Z3|MNMG_STAHJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|68448400|dbj|BAE05984.1| glucose inhibited division protein A [Staphylococcus haemolyticus
           JCSC1435]
          Length = 625

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++Q
Sbjct: 61  IDALGGQMAKAIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYRAQAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNDRTHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRQQIQDEIQRLTDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ +   +  I  ++ +    V E++
Sbjct: 481 RIKPNEHTQSVIEANGGSRLKDGI--LAIDLLRRPEMTYNTILEILEESHQLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|311070642|ref|YP_003975565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus atrophaeus 1942]
 gi|310871159|gb|ADP34634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus atrophaeus 1942]
          Length = 628

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 382/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  +A+ GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   QYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  +  + NL ++QG  
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTLLQGIA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +V Q  +  R   VVLTTGT+LRG I +G L   +G     PS  L  
Sbjct: 127 ERLIIEDGECRGVVTQTGAHYRSKAVVLTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+ G +I + KTE Q  DE    FS+ T +    Q+ C +T 
Sbjct: 187 HLEELGFDLVRFKTGTPPRVKGDSIDYSKTEIQPGDEVPRAFSYETVEYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSPETHEIIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + + TIPGLEKV ++R GYAIEYD I P +L+PTLETKKIS LF
Sbjct: 307 VYVQGLSTSLPEDVQQRMLSTIPGLEKVQMMRAGYAIEYDAIVPTQLWPTLETKKISNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ RK+   + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAGRKALDREEVILSRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R + F          +  L S+++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERFQSFQTKKAAIEAEKKRLYSVIIK 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   + S   S  +DG   T  + +  P+ + +++  + P     +  V E+++I+
Sbjct: 487 PSEENQKYIRSLGGSELKDGVRGT--DLMKRPEMNYESVTKLAPAETPVAPEVAEQVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP   DY ++  ++ E ++KL  ++P ++ QAS+I 
Sbjct: 545 VKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+Y+++  +
Sbjct: 605 GVNPADISILLVYLEQGRI 623


>gi|172059048|ref|YP_001815508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Exiguobacterium sibiricum 255-15]
 gi|205831509|sp|B1YGA7|MNMG_EXIS2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171991569|gb|ACB62491.1| glucose inhibited division protein A [Exiguobacterium sibiricum
           255-15]
          Length = 628

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/616 (44%), Positives = 387/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIG GHAG EA+  AA++G+ T ++T     +G M CNP+IGG  KG +VREIDA
Sbjct: 7   EFDVIVIGAGHAGIEASLAAARMGSKTVMLTMNPDMVGFMYCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  DA  IQ ++LN  KGPAVR  R QAD+  Y+  M++ +  + NL + Q  V
Sbjct: 67  LGGEMARAIDATYIQMKMLNTSKGPAVRALRAQADKFEYQNRMKKALEDEPNLLLRQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +    +V    +  R   V++TTGTF+RG I IG+L   +G     PS +L  
Sbjct: 127 ERLIIEDDTCVGVVTNTGAEYRAKAVIITTGTFMRGKIIIGELSYESGPNNQMPSVNLSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+DGKTI + KTE Q  D   +PFS  T ++   QI C +T 
Sbjct: 187 HLEELGFELARFKTGTPPRIDGKTIDYSKTEIQPGDAVALPFSHETTQMITEQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH++I  N+  S ++SG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+ 
Sbjct: 247 TTEYTHQLIDANLHRSPMFSGMIKGTGPRYCPSIEDKVVRFSDKPRHQIFLEPEGRDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++QH  +R+IPGLEK  ++RPGYAIEYD + P +L+PTLETK+I+GLF
Sbjct: 307 VYVQGLSTSLPEDVQHDILRSIPGLEKSEMMRPGYAIEYDAVVPTQLWPTLETKRIAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A K  + D +  SR+  YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAALKVQERDPLILSRSQGYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+ IG  LG I E R  + A+  ++       L+ +V+ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLSDIGYDLGLINETRHAKLAEKKEDIQREMKRLEKVVIK 486

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +    N   T I      +   A   L  P+ +   +  + P     S    E+++I+  
Sbjct: 487 ATSEVNERLTEIGVSPLKEALHAITLLKRPEITYAMIADMTPPPVALSEEAAEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q+ + + +   EK+ IP+  DY  +  L+ E K+KL+ ++P ++ QAS+I G+
Sbjct: 547 YAGYIDKQLDQVERMMRMEKKRIPERLDYDVISGLAIEAKQKLNQVRPLSIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
            P+ +++LL+YI++  
Sbjct: 607 NPSDISILLVYIEQGQ 622


>gi|258411159|ref|ZP_05681438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9763]
 gi|257840044|gb|EEV64509.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A9763]
          Length = 625

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIVLEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|27469334|ref|NP_765971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis ATCC 12228]
 gi|57865943|ref|YP_187604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis RP62A]
 gi|282874717|ref|ZP_06283596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis SK135]
 gi|38257565|sp|Q8CMN6|MNMG_STAES RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71152074|sp|Q5HS35|MNMG_STAEQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27316884|gb|AAO06059.1|AE016752_92 glucose inhibited division protein A [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636601|gb|AAW53389.1| glucose inhibited division protein A [Staphylococcus epidermidis
           RP62A]
 gi|281296433|gb|EFA88948.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis SK135]
 gi|319399918|gb|EFV88164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis FRI909]
 gi|329724153|gb|EGG60671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU144]
          Length = 625

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/624 (44%), Positives = 397/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDV 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ + + +  I  ++ +    V E++
Sbjct: 481 RIKPNEHTQAIIEAKGGSRLKDGI--LAIDLLRRPEMNYETILEILEESHQLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|329735765|gb|EGG72046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU028]
          Length = 625

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/624 (44%), Positives = 397/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIDRAFSFETTEFILNQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDV 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ + + +  I  ++ +    V E++
Sbjct: 481 RIKPNEHTQAIIEAKGGSRLKDGI--LAIDLLRRPEMNYETILEILEESHQLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|282902628|ref|ZP_06310521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C160]
 gi|282921287|ref|ZP_06329005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C427]
 gi|282315702|gb|EFB46086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C427]
 gi|282597087|gb|EFC02046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus C160]
          Length = 625

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 396/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY++++ ++ 
Sbjct: 599 RISGVNPADISILLIYLEQSKLQR 622


>gi|302334325|gb|ADL24518.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 625

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MAQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  ++ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRKQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|293367585|ref|ZP_06614238.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318298|gb|EFE58691.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736135|gb|EGG72408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU045]
          Length = 625

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/624 (44%), Positives = 397/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILNQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDV 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         + +   S  +DG    A + L  P+ + + +  I  ++ +    V E++
Sbjct: 481 RIKPNEHTQAIIEAKGGSRLKDGI--LAIDLLRRPEMNYETILEILEESHQLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|146309631|ref|YP_001190096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudomonas mendocina ymp]
 gi|166222721|sp|A4Y198|MNMG_PSEMY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145577832|gb|ABP87364.1| glucose inhibited division protein A [Pseudomonas mendocina ymp]
          Length = 630

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/621 (46%), Positives = 384/621 (61%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   FPSRFDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q
Sbjct: 63  IDALGGAMATATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAVREILENQANLWIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +
Sbjct: 123 QAADDLIVENAQVKGVVTQMGLRFHADSVVLTTGTFLGGLIHIGLQNYSGGRAGDPPSMA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIEC 240
           L +   +     GRLKTGTP R+DG+++ +    +Q  D      SF+  +    +QI C
Sbjct: 183 LAHRLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPTPLMSFLGKREHQPKQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL
Sbjct: 243 WITHTNARTHEIIAANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++YIGV++DDL + G 
Sbjct: 363 GGLFFAGQINGTTGYEEAGAQGLLAGCNAALRAQGKEAWCPRRDEAYIGVLVDDLITLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS
Sbjct: 423 QEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDERWAAFEAKREGIVREEQRLKS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +        +I+ +              L+ P+     L  I  ++    + V E+++
Sbjct: 483 TWVRPGTPQGDAIAARFGTPLAHEYNLLNLLARPEIDYAALAEIT-ESPAVDNQVAEQVE 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P+D DYS++  LS E++ KL   +P  L QA +
Sbjct: 542 IKTKYAGYIDRQQDEIARLRASEDTKLPEDLDYSAISGLSKEIQFKLGNTRPATLGQAGR 601

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLLI++KK + 
Sbjct: 602 IPGVTPAAISLLLIHLKKRSA 622


>gi|283471925|emb|CAQ51136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 625

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFEIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  I  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILEILEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|224475498|ref|YP_002633104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420105|emb|CAL26919.1| glucose inhibited division protein A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 624

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/622 (44%), Positives = 395/622 (63%), Gaps = 3/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAG EA   +A+ GA T ++T     +G M CNP++GG  KG +VRE
Sbjct: 1   MSLDYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNVGFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDRTHIQMRMLNTGKGPAVRALRAQADKVLYQKEMKRVLEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + I  +     +  R   VV+TTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDDEIKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNLKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRELGFDIVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEFILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG +
Sbjct: 241 LTYTNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKYVRFNDKPRHQLFLEPEGRD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q + ++TI GLEK +++R GYAIEYD I P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQREMLQTIEGLEKADMMRAGYAIEYDAIVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A +         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGRVLGTGEKVLSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I + R  RF +   +     + L ++
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGHELGMISDERYARFNEKRDQIEAEINRLTNI 480

Query: 482 VLTSKNLSSTSISFKQDGKT---RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +     +   I  +          A E L  P+   Q +  I  +  +  + V E+++I
Sbjct: 481 RIKPNEHTQEVIKSRNGSPLKDGILAIELLRRPEMDYQAILDILEEDHQIPADVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP D DYS + +L++E +EKL+ +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEQKKIPHDLDYSKIDSLASEAREKLAEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA +++LL+Y+++  ++ 
Sbjct: 601 SGVNPADISILLVYLEQGKLER 622


>gi|149925397|ref|ZP_01913661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Limnobacter sp. MED105]
 gi|149825514|gb|EDM84722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Limnobacter sp. MED105]
          Length = 650

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/627 (47%), Positives = 397/627 (63%), Gaps = 12/627 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGGHAG EAA  AA+ G+ T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   EEFDVIVVGGGHAGTEAALAAARAGSKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMAIATDEAGIQFRILNGSKGPAVRATRAQADRVLYRQAIRTRLENQHNLSIFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +   V Q     +   VVLT GTFL G IH+G     AGR GD PS  L 
Sbjct: 125 VEDLLLDGDRVCGAVTQVGLKFKAKAVVLTAGTFLNGKIHVGLQNYSAGRAGDPPSIGLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   ++Q  D   +P FS++ +  +  RQ+ C 
Sbjct: 185 MRLQEMKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPVPVFSYLGNTAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL 
Sbjct: 245 ITHTNQNTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKESHQIFLEPEGLT 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNG+ST+LP ++Q   + +I GLE   I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 TNEYYPNGVSTSLPFDVQLNLLHSIKGLENAYIMRPGYAIEYDYFDPRALKTTLETKAIE 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+A      D     R ++Y+GV++DDLTSKGV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGVNAALLVQGKDQWTPRRDEAYLGVLVDDLTSKGVA 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTPIG KLG + + R K F++  +     +  L+S 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADQRLTPIGRKLGLVDDIRWKAFSEKREAVELEKQRLRST 484

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS-------SL 531
            +  K      +  +  K   +    Y+ L  PD S Q+L ++  +    +       + 
Sbjct: 485 WINPKIVAQAEAERVLHKGIDREYNLYDLLKRPDVSYQDLSTLSKENGDLALSNPLEQTD 544

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +I +L+IE  YA Y  RQ  E +     E   +P DFDYS +  LS E+++KL+  KP  
Sbjct: 545 LISQLEIEVKYAGYVLRQQAEVERGAGNESIRLPADFDYSGVNGLSKEVQQKLNTHKPET 604

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           + QA +I+G+TPAA++LLL+++KK  +
Sbjct: 605 IGQAGRIQGVTPAAISLLLVHLKKRDL 631


>gi|226947204|ref|YP_002802277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azotobacter vinelandii DJ]
 gi|226722131|gb|ACO81302.1| Glucose-inhibited division protein A, gidA [Azotobacter vinelandii
           DJ]
          Length = 631

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/624 (46%), Positives = 389/624 (62%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+E
Sbjct: 4   FPSRFDVIVIGGGHAGTEAALAAARMGVKTLLLSHNVETLGHMSCNPAIGGIGKSHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D AGIQFRVLN +KGPAVR  R QADR LY+  ++R + +Q NL + Q
Sbjct: 64  IDALGGAMARATDVAGIQFRVLNSRKGPAVRATRAQADRALYKAEIRRILENQPNLWIFQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   +  +V Q     R   VVLT GTFL G+IHIG      GR GD PS +
Sbjct: 124 QSADDLIVEGEQVRGVVTQMGLKFRADNVVLTAGTFLGGLIHIGLENYSGGRAGDPPSQA 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +     GRLKTGTP R+DG++I +    +Q  D  +   SF+  +  + RQ+ C
Sbjct: 184 LARRLRELPLRVGRLKTGTPPRIDGRSIDFSAMTEQPGDTPVPVMSFLGSREQHPRQVSC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH+II  N+  S +YSG I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL
Sbjct: 244 WITHTNARTHQIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQVFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VYPNGIST+LP ++Q + +R+I GLE  +I+RPGYAIEYD+ +P++L  +LETK I
Sbjct: 304 STHEVYPNGISTSLPFDVQLEIVRSIRGLENAHIVRPGYAIEYDFFDPRDLKYSLETKVI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N+A ++   +  C  R ++Y+GV++DDL + G 
Sbjct: 364 GGLFFAGQINGTTGYEEAGAQGLLAGANAALRAQGREAWCPRRDEAYLGVLVDDLITLGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LK+
Sbjct: 424 QEPYRMFTSRAEYRLILREDNADLRLTEQGRELGLVDDARWAAFCAKREGIEREEQRLKT 483

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +        +++ +      +       L+ P+    +L  +     +    V E+++
Sbjct: 484 TWVRPGTPQGKAVAARFGSPLAREYNLLNLLARPEVDYASLVELTGGGAE-DEQVAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  E   ++  E   +P++ DY+S+  LS E++ KL   +P  L QAS+
Sbjct: 543 IKTKYAGYIDRQQDEIARLRASESVRLPENLDYASISGLSKEIQHKLGQGRPQTLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+TPAA++LLLI++KK     N
Sbjct: 603 IPGVTPAAISLLLIHLKKRDAGRN 626


>gi|119776787|ref|YP_929527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shewanella amazonensis SB2B]
 gi|166200610|sp|A1SBV1|MNMG_SHEAM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119769287|gb|ABM01858.1| glucose-inhibited division protein A [Shewanella amazonensis SB2B]
          Length = 629

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/622 (45%), Positives = 379/622 (60%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D +GIQFR LN  KGPAVR  R QADR LY+  +   +  Q NL + Q
Sbjct: 63  IDALGGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +   V Q         VVLT GTFL G IHIG      GR GD P+ +
Sbjct: 123 QAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPAIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +         GRLKTGTP R+D +TI +    +Q  D  L   SF+ D   +  QI C
Sbjct: 183 LAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL
Sbjct: 243 YITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R+I G+E+  I+RPGYAIEYDY +P++L  +LETK I
Sbjct: 303 TTTEIYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+A +    +     R  +Y+GV++DDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R ++F++  +     +  L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRLRG 482

Query: 481 LVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++        +  +  + L  P+     L  +          L  E++
Sbjct: 483 QWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  YA Y  RQ  E  + +  E   +P D DYS +P LSNE+  KL+  KP  + QAS
Sbjct: 543 QIQVKYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGVTPAAVSILLVHLKKRGL 624


>gi|329767567|ref|ZP_08259088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella haemolysans M341]
 gi|328839194|gb|EGF88778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Gemella haemolysans M341]
          Length = 627

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/624 (43%), Positives = 381/624 (61%), Gaps = 7/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  +++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHASSRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  T+++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIEDNKVVGLRTMLGTAYKAKTIIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  DE    FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDEEEHAFSYETKEFVKDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNSTTHEIIDKNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   + +I GLE   I+R GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVHSIAGLENAVIMRNGYAIEYDAVNPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT      G + + R  +F +  +        LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTKERYNKFCEKRKMVADEIERLKTFRI 485

Query: 484 TS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T      + L+  + +  +DG    A + L  P+ S  N+  +  D       V+E+++I
Sbjct: 486 TPTAATLEKLAELNSAEIRDGI--LAIDMLRRPELSHANVLYLANDDTVLPKDVVEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K   +  IP D +Y  +P+L+ E +EKL  + P  + QAS+I
Sbjct: 544 EVKYEGYIKKSLQQVEKLKKMNEMKIPTDLNYDEVPSLALEAREKLKKVLPLTIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ PA +++LL+Y+++     NE
Sbjct: 604 SGVNPADISILLVYLEQRRGTNNE 627


>gi|242243259|ref|ZP_04797704.1| glucose inhibited division protein A [Staphylococcus epidermidis
           W23144]
 gi|242233208|gb|EES35520.1| glucose inhibited division protein A [Staphylococcus epidermidis
           W23144]
          Length = 630

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/622 (44%), Positives = 396/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 8   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 68  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 128 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 188 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 248 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 308 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 368 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  +F +  Q+       L  + +
Sbjct: 428 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYAKFNEKRQQIKDEIQRLTDVRI 487

Query: 484 TSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                    + +   S  +DG    A + L  P+ + + +  I  ++ +    V E+++I
Sbjct: 488 KPNEHTQAIIEAKGGSRLKDGI--LAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I
Sbjct: 546 QTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRI 605

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA +++LL+Y+++  ++ 
Sbjct: 606 SGVNPADISILLVYLEQGKLQR 627


>gi|251811360|ref|ZP_04825833.1| glucose inhibited division protein A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805109|gb|EES57766.1| glucose inhibited division protein A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 630

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/622 (44%), Positives = 396/622 (63%), Gaps = 7/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VREID
Sbjct: 8   QEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R + +++NLD++QG 
Sbjct: 68  ALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQGM 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  R   V++TTGTFLRG I +G LK  +G     PS +L 
Sbjct: 128 VDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVTLA 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  K  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T
Sbjct: 188 DNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCWLT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT+
Sbjct: 248 YTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I  L
Sbjct: 308 EVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIKNL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  EP
Sbjct: 368 YTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTNEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+       L  + +
Sbjct: 428 YRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYARFNEKRQQIKDEIQRLTDVRI 487

Query: 484 TSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                    + +   S  +DG    A + L  P+ + + +  I  ++ +    V E+++I
Sbjct: 488 KPNEHTQAIIEAKGGSRLKDGI--LAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E + IP+D DYS + +L++E +EKL+ +KP N+ QAS+I
Sbjct: 546 QTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVESLASEAREKLAEVKPLNIAQASRI 605

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA +++LL+Y+++  ++ 
Sbjct: 606 SGVNPADISILLVYLEQGKLQR 627


>gi|307943443|ref|ZP_07658787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseibium sp. TrichSKD4]
 gi|307773073|gb|EFO32290.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseibium sp. TrichSKD4]
          Length = 625

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/614 (59%), Positives = 463/614 (75%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ S+DVIVIGGGHAGCEAAA +A++GA TAL+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 4   VDLSFDVIVIGGGHAGCEAAAASARVGAKTALVTHKFETIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYR AMQ EI + ENL V++
Sbjct: 64  IDALDGLMGRVADKAGIQFRMLNRRKGPAVRGPRTQADRKLYRDAMQAEIAALENLSVVE 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+   F  ++  +  +++ D   +   +VVLT+GTFLRG+IHIG  KIPAGR G++P+  
Sbjct: 124 GQANRFLFDEGKVVGLLLSDGRKVEAKSVVLTSGTFLRGLIHIGDQKIPAGRSGEAPALG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  FD GRLKTGTPARLDG+TI W+K + Q ADE  +PFS +T+KIT  QIEC 
Sbjct: 184 LSESLEEIGFDLGRLKTGTPARLDGRTIKWEKLDAQLADENPVPFSTLTEKITTPQIECH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  ETHRII EN+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 244 ITRTTPETHRIIRENLSRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE+ Q  F+RTIPGLE+V + +PGYAIEYD+++P+EL PTLE +  S
Sbjct: 304 DHTVYPNGISTSLPEDAQLAFLRTIPGLEEVEVFQPGYAIEYDHVDPRELNPTLEARICS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N+  K+  ++     R++ YIGVMIDDL ++G+ 
Sbjct: 364 GLFLAGQINGTTGYEEAGAQGLVAGLNAGLKAQGMEPFTVDRSEGYIGVMIDDLVTRGIT 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+GMK+GCI E R+  F   ++    +  LLK L
Sbjct: 424 EPYRMFTSRAEYRLSLRADNADQRLTPLGMKIGCISEARRVAFETKMKSLTEVADLLKRL 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T        +   QDG  R+A++ LSYPD S + L S+ P+       ++E++  ++ 
Sbjct: 484 TITPAEAQRKGLPVNQDGIRRSAFDLLSYPDMSFEQLASVWPELEDIDPSIVEQVSSDAL 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   +K +E   IP DFD+++L  LSNE+K+KL  ++P  L QAS+++G+
Sbjct: 544 YAVYLERQAADIAALKKDEALAIPADFDFNALTGLSNEVKQKLEAVRPATLGQASRMDGI 603

Query: 602 TPAALNLLLIYIKK 615
           TPAAL L+L ++K+
Sbjct: 604 TPAALTLILSHLKR 617


>gi|308071638|ref|YP_003873243.1| glucose inhibited division protein A [Paenibacillus polymyxa E681]
 gi|305860917|gb|ADM72705.1| Glucose inhibited division protein A [Paenibacillus polymyxa E681]
          Length = 629

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/618 (44%), Positives = 382/618 (61%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG E+A  AA++G  T +IT     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   DYDVIVVGAGHAGVESALAAARMGCRTLMITINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+ AM+  +  + NL + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHAMKETMEKEPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L  
Sbjct: 127 EELIMEDGHCVGVITKTGTEYRSKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSLRLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C +T 
Sbjct: 187 HLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDQPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T++ETH+II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSVETHQIINDNLHRAPMFSGLIEGTGPRYCPSIEDKVVRFSDKPKHQIFLEPEGKNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   +R+IPG+EKV ++R GYAIEYD + P +L+PTLETKK+ GLF
Sbjct: 307 YYVQGLSTSLPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVVLDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLTPIG  +G I + R +RF    Q+       L+   + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTPIGHDIGLITDERYERFLDKKQKVEQEIERLRLAKVR 486

Query: 485 SKNLSST----SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +++        +  QDG        L  P+ S   +  I P     +    E+++I+ 
Sbjct: 487 PVDINEMLQQGGSAPIQDGSN--LLTVLRRPEISYAQVAQISPSPIALTEEEQEQVEIQI 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  +Q++  + ++  EK+ +P+D  YS +  L+ E K+KL  ++P ++ QAS+I G
Sbjct: 545 KYAGYIEKQLMHVERLQKMEKKKLPEDIVYSEVQGLAIEAKQKLEKIRPMSIGQASRISG 604

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPA +++LL+Y++    
Sbjct: 605 VTPADISILLVYLEHYNR 622


>gi|330685268|gb|EGG96929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus epidermidis VCU121]
          Length = 625

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/622 (44%), Positives = 394/622 (63%), Gaps = 3/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I  ++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKNVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDDEVKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++     F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADNLRGLGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K    +    SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGKEEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I + R  +F    Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYAQFNHKRQQIKDEIQRLTDI 480

Query: 482 VLTSKNLSSTSISFKQDGKT---RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   + + + I      K      A + L  P+ +   +  I  +  +  S V E+++I
Sbjct: 481 RIKPNDHTQSVIEANGGSKLKDGILAIDLLRRPEMTYDTILEILEEDHQLPSEVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQKVEKVKRMEQKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA +++LL+Y+++  ++ 
Sbjct: 601 SGVNPADISILLVYLEQGKLQR 622


>gi|330812746|ref|YP_004357208.1| glucose inhibited division protein A [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380854|gb|AEA72204.1| putative glucose inhibited division protein A [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 632

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 386/619 (62%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  +A++GA T L+TH   T+G+MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FEVIVIGGGHAGTEAALASARMGAKTLLLTHNVETLGAMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAVREILENQPNLWIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++ +  +V Q        +VVLTTGTFL G+IHIG      GR GD PS +L + 
Sbjct: 127 DLIVEQDQVRGVVTQMGLRFFADSVVLTTGTFLGGLIHIGLQNFSGGRAGDPPSIALAHR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP R+DGK++ +    +Q  D  +   SFM +K  + RQ+ C IT 
Sbjct: 187 LRELPLRVGRLKTGTPPRIDGKSVDFSVMTEQPGDTPIPVMSFMGNKEQHPRQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TN  TH II  N+  S +YS   +I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T
Sbjct: 247 TNARTHEIIAANLDRSPMYSAAGEIEGVGPRYCPSIEDKIHRFADKESHQVFIEPEGLTT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q Q +++I G+E  +I+RPGYAIEYDY +P++L  +LETK I G
Sbjct: 307 HELYPNGISTSLPFDVQLQIVQSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKAIGG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG N+A  +   +  C  R ++YIGV++DDL + G  E
Sbjct: 367 LFFAGQINGTTGYEEAGAQGLLAGANAALLAKGKEAWCPRRDEAYIGVLVDDLITLGTQE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        LKS  
Sbjct: 427 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCKKRESIELEEQRLKSTW 486

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +        +I+ K              LS P+     L  +     +    V E+++I+
Sbjct: 487 VRPGTEQGDAIAAKFGTPLTHEYNLLNLLSRPEIDYAGLVEVTGQGAE-DPQVAEQVEIK 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  E   ++  E   +P D DY+ +  LS E++ KL   +P  L QAS+I 
Sbjct: 546 TKYAGYIDRQQDEIARLRASEDTKLPVDIDYTGISGLSKEIQSKLGATRPETLGQASRIP 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LL+I++KK   
Sbjct: 606 GVTPAAISLLMIHLKKRGA 624


>gi|311696581|gb|ADP99454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine bacterium HP15]
          Length = 628

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/615 (46%), Positives = 399/615 (64%), Gaps = 5/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + SQ NL + Q    
Sbjct: 67  GGAMAEATDKAGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRHTLESQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVTGVVTQTGIRFNARTVVLTTGTFLGGVIHIGMQHHAGGRAGDAPANALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SF+  +  +  Q+ C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARSVDFSVMQEQWGDDPTPVMSFIGSRSQHPEQVCCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II      S +++G I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEQTHDIIRSGFDRSPMFAGSIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +R+IPG E  +I RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLAAVRSIPGFENAHITRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN+A +S + D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINAALRSQEKDEWYPRRDEAYLGVLVDDLITMGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F    +     RS L++  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVNDERWQKFNDKREAIATERSRLEATRIH 486

Query: 485 SKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +     +   + ++  E L  P+    ++  I  +  +   +V ++++IE  
Sbjct: 487 PNTEAGERANGFLKQPMTRDQSLAELLRRPEIVYSHIAEIGAEKAE-DPVVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQTDEIERLRKNENTALPVDLDYDVIGGLSNEIKQKLKTVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKKN 616
           TPAA++ +L+++KK 
Sbjct: 606 TPAAVSQILVHLKKR 620


>gi|242372606|ref|ZP_04818180.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W1]
 gi|242349661|gb|EES41262.1| glucose inhibited division protein A [Staphylococcus epidermidis
           M23864:W1]
          Length = 626

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/624 (45%), Positives = 396/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  ++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYRAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADNLRELGFDVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A           SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  ++       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDVGYELGMISEERYARFNEKRKQIQDEIQRLTDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +   +     + S   S  +DG    A + L  P+ +   +  I  +  +    V E++
Sbjct: 481 RIKPNDHTQSVIESKGGSRLKDGI--LAIDLLRRPEMTYDTILEILEEEHRLPEAVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKLQR 622


>gi|309780414|ref|ZP_07675164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia sp. 5_7_47FAA]
 gi|308920807|gb|EFP66454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia sp. 5_7_47FAA]
          Length = 649

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/632 (45%), Positives = 385/632 (60%), Gaps = 15/632 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRSINFSVLEEQPGDLDPVPVFSFMGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K ISG
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRALKASLESKAISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +    D     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEVGRALGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +    L    +  +  K   +     + L  P+ + + L  +            +    +
Sbjct: 486 VNPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLMGMQGGKYALESPLAEDPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP
Sbjct: 546 EQIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             + QAS+I G+TPAA++LLL+++KK  ++  
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLRGQ 637


>gi|91785986|ref|YP_546938.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Polaromonas sp. JS666]
 gi|123165597|sp|Q12HF2|MNMG_POLSJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91695211|gb|ABE42040.1| glucose inhibited division protein A [Polaromonas sp. JS666]
          Length = 673

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/650 (44%), Positives = 388/650 (59%), Gaps = 32/650 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 9   QEFDVIVVGGGHAGTEAALASARMGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVD 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  
Sbjct: 69  AMGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRRRLENQPNLWLFQQA 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ SL 
Sbjct: 129 VDDLMVEGDRVVGAVTQVGIRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAVSLS 188

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIPFSFMTDKITNR 236
           +   +     GRLKTGTP R+DG+TI + K  +Q  D         +  FSFM   I + 
Sbjct: 189 SRLKELKLPQGRLKTGTPPRIDGRTIDFSKCIEQPGDGMPGGTAGPVPVFSFMGGAIPHP 248

Query: 237 -QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQIFL
Sbjct: 249 QQMPCWITHTNERTHEIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQIFL 308

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL T  +YPNGIST+LP +IQ++ +R++ G+E  +I+RPGYAIEYDY +P+ L  T 
Sbjct: 309 EPEGLTTHEIYPNGISTSLPFDIQYELVRSMAGMENAHILRPGYAIEYDYFDPRALKTTF 368

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN--------KLDCICFSRTDSY 407
           ET+ I GLF AGQINGTTGYEEAAAQG+ AGIN+A +                  R ++Y
Sbjct: 369 ETRAIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQCRALGGLPNDHGGAWLPRRDEAY 428

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F++ 
Sbjct: 429 LGVLVDDLITKGVTEPYRMFTSRAEYRLMLREDNADMRLTEKGRELGLVDDARWDAFSRK 488

Query: 468 IQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--- 521
               +     L+SL +   NL    +  +  K   +     + L  PD +   L S+   
Sbjct: 489 RDAVSRETERLRSLWVNPHNLPLAEAERVLGKSIEREYNLLDLLRRPDVNYAGLMSLEEG 548

Query: 522 ---CPDAR-------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
               P+           +  VIE+++I + YA Y   Q  E +     E   +P D DY 
Sbjct: 549 KYANPELAAEAAASDDLAKSVIEQIEITAKYAGYIDLQKTEVERAAHYENLKLPTDLDYL 608

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            + ALS E ++ L+  +P  L  AS+I G+TPA ++LLL+++KKN  K  
Sbjct: 609 QVSALSFEARQTLARHRPETLGMASRISGITPATVSLLLVHLKKNLWKNT 658


>gi|296134493|ref|YP_003641740.1| glucose inhibited division protein A [Thermincola sp. JR]
 gi|296033071|gb|ADG83839.1| glucose inhibited division protein A [Thermincola potens JR]
          Length = 634

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 385/619 (62%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AA+LG  T  +T     +  M CNPA+GG  KGHLVREIDA
Sbjct: 7   TYDVIVIGTGHAGCEAALAAARLGCKTLAVTLNMDNVAFMPCNPAVGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++LY+L M++ +  + NLDV Q  V
Sbjct: 67  LGGQMGINTDKTHIQMRMLNTGKGPAVHALRAQADKKLYQLEMKKTLELEPNLDVKQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N ++ +V    ++ +   V++T+GTFLR  I IG +    G  G  P+  L  
Sbjct: 127 EKIILQGNRVTGVVTNTGAIFQARAVIITSGTFLRARIIIGDVNYSGGPSGQFPAQKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GR KTGTPAR+  K++ + K   Q  D+    FSF+  K+   QI C +T 
Sbjct: 187 SLKELGLELGRFKTGTPARVHRKSVDFSKMIIQPGDDYPHTFSFIMPKMKREQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II+ N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG +T+ 
Sbjct: 247 TTEDTHKIILANLHRSPLYTGKIEGTGPRYCPSIEDKVVRFADKPCHQIFLEPEGKDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G ST+LPE+IQ Q +RTI GLEKV ++RPGYAIEYDY+ P +L  TLETK I GL+
Sbjct: 307 MYVQGFSTSLPEDIQIQMLRTIIGLEKVEMMRPGYAIEYDYVVPTQLKLTLETKNIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAGIN+A K  +++     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGLVAGINAALKIKEMEPFILKRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G K+G + E R + F +         S L +  ++
Sbjct: 427 RIMTSRAEYRLLLRHDNADLRLTEKGYKIGLVDENRYRIFVQKRDAIEKEISRLANENIS 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+   +  +  +A+E L  P+ +   L  +          V E+++I+  
Sbjct: 487 PSEETQRVINSVGSTELKQKISAFELLKRPEITYSVLEQLGAGIADLDEEVKEQVEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM + +     E + IP+  +Y  +  LS E K+KLS ++P ++ QA +I G+
Sbjct: 547 YEGYIKKQMAQVERFVKMEAKTIPEWVEYEKIQGLSTEAKQKLSSIRPASIGQAGRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++L++YI++   K 
Sbjct: 607 SPADISVLMVYIEQQRRKR 625


>gi|262273123|ref|ZP_06050940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Grimontia hollisae CIP 101886]
 gi|262222879|gb|EEY74187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Grimontia hollisae CIP 101886]
          Length = 629

 Score =  792 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/626 (45%), Positives = 394/626 (62%), Gaps = 10/626 (1%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  + ++DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV
Sbjct: 1   MFYQDNFDVIVVGGGHAGTEAALAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM R  D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL +
Sbjct: 61  KEVDALGGLMARAIDKGGIQFRTLNASKGPAVRATRAQADRALYKAAVREALENQPNLML 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E++ ++ +V +     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVNDLIVEQDQVTGVVTEMGLKFRARAVVLTVGTFLGGKIHIGLENYAGGRAGDPPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
            +L +   +  F   RLKTGTP R+D +T+ +   + Q  D+    FSFM     + RQ+
Sbjct: 181 IALADRLRELPFRVDRLKTGTPPRIDARTVDFSVMQTQHGDDPCPVFSFMGKVSDHPRQV 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPE
Sbjct: 241 PCYITYTNEQTHDVIRKNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDKHQIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+ +YPNGIST+LP ++Q   IR+I G E   +IRPGYAIEYD+ +P++L  T ETK
Sbjct: 301 GLTTNELYPNGISTSLPFDVQMGIIRSIKGFENARVIRPGYAIEYDFFDPRDLKQTFETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG N+A  +   +  C  R  +Y+GV+IDDL++ 
Sbjct: 361 FIKGLFFAGQINGTTGYEEAAAQGLLAGANAALFAQDKEGWCPRRDQAYMGVLIDDLSTM 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++        L
Sbjct: 421 GTKEPYRMFTSRAEYRLLLREDNADLRLTEMGRELGLVDDERWARFNQKLENMEQETQRL 480

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFS---ICPDARKFSSLV 532
           +S  +   +  + +++        +     + L  P+ +  +L +     P         
Sbjct: 481 RSTWIHPASEHADALNAILKTPLSREANGEDLLRRPEVTYNDLVANPVFAPAHEDL--QA 538

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  YA Y  RQ  E ++    E   +P D DY+ +  LSNE+  KL   +P  +
Sbjct: 539 SEQVEIQIKYAGYINRQKEEIEKYIRHENTRLPIDLDYTQIKGLSNEVVAKLRDARPETI 598

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            +AS+I G+TPAA+++LL+++KK  +
Sbjct: 599 GKASRISGITPAAISILLVHLKKQGM 624


>gi|73663752|ref|YP_302533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|123641434|sp|Q49UI5|MNMG_STAS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72496267|dbj|BAE19588.1| glucose inhibited division protein A [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 625

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/624 (44%), Positives = 398/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MAQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  + NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKKVIEDEANLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E ++I  +     +      V++TTGTFLRG I +G +K  +G     PS S
Sbjct: 121 GMVDDLIIEDDVIKGVRTNIGTEYWSEAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++     F+  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LADNLRGLGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETKKI 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A +    D +  SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAARVQGKDEVILSRSDAYIGVLIDDLITKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +        +  L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGYELGMISEERYARFNEKRAMIKAEQERLNGI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +   +     + +   S  +DG    A E L  P+ +   +  I  ++ +  S V E++
Sbjct: 481 RVKPNDRVQEIIEAQGGSRLKDGI--LALELLRRPEMTYDLILEILDESHQLPSDVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKIQR 622


>gi|239637282|ref|ZP_04678269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus warneri L37603]
 gi|239597119|gb|EEQ79629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus warneri L37603]
          Length = 625

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/622 (44%), Positives = 393/622 (63%), Gaps = 3/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+  I  ++NLD++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKNVIEDEDNLDIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  +     +  R   VV+TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDDEVKGVRTNIGTEYRSKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSVT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++     F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADNLRGLGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSYETTEYILEQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNDKTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG++AGIN+A K    +    SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGIMAGINAAGKVLGKEEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I   R  +F    Q+       L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISNERYAQFNHKRQQIKDEIQRLTDI 480

Query: 482 VLTSKNLSSTSISFKQDGKT---RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   + + + I      K      A + L  P+ +   +  I  +  +  S V E+++I
Sbjct: 481 RIKPNDHTQSVIEANGGSKLKDGILAIDLLRRPEMTYDTILEILEEDHQLPSEVEEQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  + + + +++K  E++ IP+D DYS + +L++E +EKL+ +KP N+ QAS+I
Sbjct: 541 QTKYEGYINKSLQQVEKVKRMEQKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA +++LL+Y+++  ++ 
Sbjct: 601 SGVNPADISILLVYLEQGKLQR 622


>gi|237749326|ref|ZP_04579806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes OXCC13]
 gi|229380688|gb|EEO30779.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oxalobacter formigenes OXCC13]
          Length = 639

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/630 (45%), Positives = 398/630 (63%), Gaps = 12/630 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  +DVIV+GGGHAG EAA V+A++G  T L+TH   T+G +SCNP+IGG+GK HLV+
Sbjct: 2   LYSVQFDVIVVGGGHAGTEAALVSARMGMKTLLVTHNFETLGQLSCNPSIGGIGKSHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G+M    D AGIQFR+LN  KGPAVR  R Q DR +YR  ++ ++ +Q+NL + 
Sbjct: 62  EVDAMGGVMALATDKAGIQFRILNSSKGPAVRATRAQIDRVIYRQIIRYQLENQKNLLLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +V     E   +  +  Q     R ++VVLT GTF+ G I +G    P GR GD P+ 
Sbjct: 122 QQQVDDLILEGEKVVGVKTQGGVEFRGTSVVLTAGTFIDGKIFVGLNSYPGGRAGDVPAL 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQI 238
           +L +S  + +   GRLKTGTP R+DG TI +   +KQ  D   +P FS   +  +   Q+
Sbjct: 182 ALSHSLKELNLPQGRLKTGTPPRIDGNTIDFSVMKKQLGDLDPVPVFSLRGNASMHPEQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF ++N HQIFLEPE
Sbjct: 242 PCWITHTNTKTHDIIRAGLDKSPLFTGVIEGVGPRYCPSIEDKIHRFSDKNSHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G+ T+  YPNGIST+L  E Q   +RTIPGLE  +I+RPGYAIEYD+ +P+ L  +LET+
Sbjct: 302 GVKTNEYYPNGISTSLSFETQIDLVRTIPGLENAHILRPGYAIEYDFYDPRCLKSSLETR 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I GLF AGQINGTTGYEEAAAQGL+AGIN++    + +     R+++Y+GVM+DDL ++
Sbjct: 362 QIKGLFFAGQINGTTGYEEAAAQGLLAGINASLYVQEKEPWVPKRSEAYMGVMVDDLITQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT  G KLGC+   +   F +  ++       +
Sbjct: 422 GVQEPYRMFTSRAEYRLSLREDNADIRLTEAGYKLGCVPLEQWIDFEQKREKIAREIERM 481

Query: 479 KSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDARKF 528
           KS  +    L+S        K+  +  +  + +  PD     L S+            + 
Sbjct: 482 KSTWVHPSMLNSEEAERVIGKEIEREYSLADLMKRPDVDYDKLASLTSIEGKNWAAEEEL 541

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I+  YA Y  RQ  E +  ++ E   +P+   Y+ + ALS E+++KL   K
Sbjct: 542 DEKVKEQVEIQIKYAGYIERQTREVRRQQYYENLRLPQSMSYAEVSALSIEVRQKLDKQK 601

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           P  L QAS+I G+TPAA++LLLIY+KK  +
Sbjct: 602 PETLGQASRISGVTPAAISLLLIYLKKQGL 631


>gi|319944931|ref|ZP_08019193.1| glucose inhibited division protein A [Lautropia mirabilis ATCC
           51599]
 gi|319741501|gb|EFV93926.1| glucose inhibited division protein A [Lautropia mirabilis ATCC
           51599]
          Length = 680

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/647 (44%), Positives = 399/647 (61%), Gaps = 30/647 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EA+ VAA+ GA T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 8   FDVIVVGGGHAGTEASLVAARTGAKTLLLSHNLDTLGQMSCNPSIGGIGKGHLVKEVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M    D AGIQFR+LN  KGPAVR  R QADR LYR A+++ + +Q N+ + Q  V 
Sbjct: 68  GGVMAVATDHAGIQFRILNASKGPAVRATRAQADRVLYRQAIRQALENQPNMTLFQQAVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  ++ Q     R   VVLT GTFL G +H+G     AGR  D  + +L   
Sbjct: 128 DLLLEGDRVVGVITQLGIQFRAKAVVLTAGTFLNGKVHVGLDNYEAGRAADPSAKTLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGIT 243
             +     GRLKTGTP R+DGKTI + +   Q  D   +P FSF+     + RQ+ C IT
Sbjct: 188 LRELALPQGRLKTGTPPRIDGKTIDYSRLGIQPGDLDPVPVFSFIGCADQHPRQLPCWIT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II + +  S +++G I+  GPRYCPSIEDKI RF +++ HQI+LEPEGL T 
Sbjct: 248 HTNARTHEIIRQALDRSPLFTGVIEGVGPRYCPSIEDKIHRFADKDSHQIYLEPEGLQTH 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP + Q   + ++ GLEK +I+RPGYAIEYDY +P+ L P LET++I GL
Sbjct: 308 EIYPNGISTSLPFDTQLAVVHSMVGLEKAHILRPGYAIEYDYFDPRGLKPGLETRQIQGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR+    +     R  +Y+GVM+DDL ++GV EP
Sbjct: 368 FFAGQINGTTGYEEAAAQGLLAGLNAARQVQGKEPWVPRRDQAYMGVMLDDLLTQGVQEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT +G ++GC+ + R + F    +      + +++ + 
Sbjct: 428 YRMFTSRAEYRLSLREDNADLRLTELGRQMGCVDDVRWQAFTSKQEAIEREIAHMRATLA 487

Query: 484 TSKNLSSTSIS-------------------------FKQDGKTRTAYEFLSYPDFSIQNL 518
             + L+                               +      + ++ L  PD S+  L
Sbjct: 488 NPQVLARLQTPQGTTQAAEEAQGASPSAPQAPAAPQGQNGTSKHSLHDLLKRPDVSLAQL 547

Query: 519 FSICPD---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
            S+ P+     +    V E+++I+  Y  Y  RQ +E + +  +E   IP D DY+ +  
Sbjct: 548 ASLMPEEFAEVQADPRVAEQVEIQIKYQGYIDRQKLEVQRMAQQEATPIPADLDYTQISG 607

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           LSNE+++KL   +P  + QA +I GMTPAA++LLL+++KK     + 
Sbjct: 608 LSNEVRQKLIAQRPQTIGQAGRIPGMTPAAVSLLLVHLKKRRKVASA 654


>gi|310644870|ref|YP_003949629.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Paenibacillus polymyxa SC2]
 gi|309249821|gb|ADO59388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Paenibacillus polymyxa SC2]
          Length = 629

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/618 (44%), Positives = 381/618 (61%), Gaps = 6/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI++G GHAG E+A  AA++G  T +IT     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   DYDVIIVGAGHAGVESALAAARMGCRTLMITINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+ AM+  +  + NL + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHAMKETMEKEPNLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ +  +  R   VVLTTGT+LRG I +G+L   +G     PS  L  
Sbjct: 127 EELIIEDGKCVGVITKTGTEYRSKAVVLTTGTYLRGKIIMGELMYESGPNNQQPSLRLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  FD  R KTGTP R+   TI + KTE Q  D++   FS+ T    N Q+ C +T 
Sbjct: 187 HLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDDQPKFFSYETKSSDNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T++ETH+II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSVETHQIINDNLHRAPMFSGLIEGTGPRYCPSIEDKVVRFSDKPKHQIFLEPEGKNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   +RTIPG+EKV ++R GYAIEYD + P +L+PTLETKK+ GLF
Sbjct: 307 YYVQGLSTSLPEDVQLAVLRTIPGMEKVEMMRNGYAIEYDAMVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+ARK    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVVLDRSQGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLTPIG  +G I + R +RF    Q+       L+   + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTPIGHDIGLITDERYERFLDKKQKVEQEIERLRLAKVR 486

Query: 485 S----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + L     +  QDG        L  P+ S   +  I P     +    E+++I+ 
Sbjct: 487 PVDVNEMLEQGGSAPIQDGSN--LLTVLRRPEISYAQVAQISPSPVALTEEEQEQVEIQI 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  +Q++  + ++  EK+ +P+D  Y+ +  L+ E K+KL  ++P ++ QAS+I G
Sbjct: 545 KYAGYIEKQLMHVERLQKMEKKKLPEDIAYNEVQGLAIEAKQKLEKIRPMSIGQASRISG 604

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPA +++LL+Y++    
Sbjct: 605 VTPADISILLVYLEHYNR 622


>gi|327438168|dbj|BAK14533.1| NAD/FAD-utilizing enzyme apparently [Solibacillus silvestris
           StLB046]
          Length = 631

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 389/619 (62%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG E+A  AAK+GA T ++T     I  M CNP++GG  KG +VREIDA
Sbjct: 9   NFDVIVVGAGHAGVESAYAAAKMGAKTLMLTINLDMIAFMPCNPSVGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGR+ D   IQ R+LN  KGPAVR  R QAD+  Y+  M+R +  +ENL + Q  V
Sbjct: 69  LGGLMGRIIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKRVLEEEENLQIHQAMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  ++ R   V++TTGTFLRG I +G LK  +G     PS  L +
Sbjct: 129 DELIVEDGEVKGVITQVGAIYRAPAVIITTGTFLRGEIILGNLKYSSGPNNQQPSIKLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI + KTE Q  D+    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLIRFKTGTPPRVNNRTIDYSKTEIQPGDDVPRAFSFETTEYIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR I EN+  S ++SG IK  GPRYCPSIEDK+ RF ++  HQIFLEPEG NT  
Sbjct: 249 TTEETHRTIEENLHLSPMFSGMIKGTGPRYCPSIEDKVTRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + I +IPGLE   ++R GYAIEYD + P +L+PTLETKKI GL+
Sbjct: 309 VYVQGLSTSLPEHVQKKLIASIPGLENAEMMRAGYAIEYDSVIPTQLWPTLETKKIQGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+A K    + I   R+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAGQGLMAGMNAAAKVLGREEIILDRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG K G I E R  +F     +     + L+ +++ 
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLTEIGYKAGMITEERYVKFQHKKAQIEQEIARLREIIIK 488

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   + +   +  +DG      + L   + +   + S+ P   + S  V E+++I+
Sbjct: 489 PNATTQEVIRNAGGAELKDGIR--GADLLKRTEMTYDLVASLTPSEIELSDDVKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++K  E + IP++ DY ++P+L+ E + KL  ++P ++ QAS+I 
Sbjct: 547 LKYEGYIQKALQQVEKMKKLEDKKIPENIDYDAIPSLATEARMKLKSVQPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADVSILLVYIEQGKI 625


>gi|258512902|ref|YP_003186336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479628|gb|ACV59947.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 628

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 381/619 (61%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  AA++G  T L+T    TI  M CNP+IGG  KG +VRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAALAAARMGCKTLLLTINLDTIAYMPCNPSIGGPAKGIVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV+  R QAD+  Y L M+  +   ENL + QG V
Sbjct: 67  LGGQMGKNTDATYIQMRMLNTGKGPAVQALRAQADKAYYALNMKWTLERTENLHLKQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  +V +         VVLTTGT+LRG I+IG++   +G  G  P+  L +
Sbjct: 127 EELLVRNGRIYGVVTKSGQEFHAQAVVLTTGTYLRGRIYIGEVSYESGPNGQMPAIRLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +   F   R KTGTP R++  +I + K   Q  D     FSF  D     Q+ C +T 
Sbjct: 187 CLVDLGFRLVRFKTGTPPRINKNSIDFSKLIAQPGDPVPRHFSFDPDTPVRDQVPCWLTG 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII+EN+  S +YSG+IK  GPRYCPSIEDK+VRF +R+ HQIFLEPEG +T  
Sbjct: 247 TTEETHRIILENLHRSPLYSGEIKGTGPRYCPSIEDKVVRFHDRDTHQIFLEPEGPHTCE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q + + +IPGLE+  ++RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 307 WYVQGLSTSLPEDVQLKILHSIPGLERAEMLRPGYAIEYDAVVPTQLWPTLETKLVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAA QG++AGIN+ARK    + +  SR+D+YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQLNGTSGYEEAAGQGIMAGINAARKVKGEEPVVLSRSDAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT +G ++G + ER   R  +  +      + L  + + 
Sbjct: 427 RLLTSRAEHRLLLRHDNADLRLTELGYRIGLVSERAYSRVMRKKEGIQAELARLSRVKVK 486

Query: 485 SKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
            + ++        +      +  + L  P+ S   + +I P    +    V E+++IE  
Sbjct: 487 PQEVNGRLAEWGSQPIESGMSLAQLLKRPELSYDQIRTIDPTGGVEIDPEVREQVEIEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q    +  K  E R +P++ DY  +  L+ E +EKLS ++P  + QA++I G+
Sbjct: 547 YAGYIRKQNELIERQKRLEGRKLPENLDYMQIKGLAMEAREKLSRVRPRTVGQAARIPGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           TPA +++LL+Y+     + 
Sbjct: 607 TPADISILLVYLDAQERRA 625


>gi|220933187|ref|YP_002510095.1| glucose inhibited division protein A [Halothermothrix orenii H 168]
 gi|219994497|gb|ACL71100.1| glucose inhibited division protein A [Halothermothrix orenii H 168]
          Length = 628

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 380/621 (61%), Gaps = 4/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA+   A++G     +T     +  M CNP++GG GK H+VREID
Sbjct: 6   KEYDVIVIGAGHAGSEASLAPARMGFKVLTMTVDLDHVAFMPCNPSLGGPGKSHIVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D   IQ R+LN  KGPAVRG R QAD++ Y L M+R +  + N+D+ Q  
Sbjct: 66  ALGGEMARNMDETMIQIRMLNTSKGPAVRGLRGQADKKQYHLRMKRVLEREPNVDLKQEI 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   I  ++ +   + R   V++TTGTFL+G I IG+    AG     P+N L 
Sbjct: 126 AEKLVIEDGEIKGVITKTGILYRAKKVIVTTGTFLKGKIIIGEATFNAGPNQQYPANKLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K  F   R KTGTP R++  ++ + K ++Q  D+ L  FSF++   T  Q+ C +T
Sbjct: 186 ESLKKAGFKLRRFKTGTPPRVNKNSLDFSKMKEQTGDKGLT-FSFVSPPFTREQVSCWLT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHRII EN   + ++SGDI+  GPRYCPSIEDK+VRF  ++ HQIFLEPEG  TD
Sbjct: 245 YTTDETHRIIQENKHRTPLFSGDIEGVGPRYCPSIEDKVVRFPHKDRHQIFLEPEGEFTD 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q   +R+IPG+EK  I+RP YAIEYD I+P +L  TLE K I GL
Sbjct: 305 EYYVAGLSSSLPEDVQIDLVRSIPGMEKAEIMRPAYAIEYDCIDPTQLKLTLEAKHIKGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           ++AGQINGT+GYEEAA QGL+AGIN++      D +   R+++YIGV+ID+L +KG  EP
Sbjct: 365 YMAGQINGTSGYEEAAGQGLIAGINASLSLQGKDPLILKRSEAYIGVLIDELVTKGTNEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLTP G ++G I E R K+F K + +       L+S  +
Sbjct: 425 YRIMTSRAEYRLILRQDNADQRLTPKGYEIGLISEERYKKFRKKVDKIEEALEFLRSNQI 484

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +        +     G   K  T  + L  P    ++L     D  ++   +IE++ I+ 
Sbjct: 485 SPTPEVRERLKELNSGDLSKPVTLEQLLRRPQLEYRDLKYFVDDLPEYPDDIIEQVSIQV 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQM + ++ K  E +LIP D DY  L  L  E +EKL  +KP +L QAS+I G
Sbjct: 545 KYKGYIDRQMSQIEQFKKMEDKLIPDDIDYQELENLRLEAREKLDKIKPRSLGQASRISG 604

Query: 601 MTPAALNLLLIYIKKNTVKLN 621
           ++PA +++L++Y+++   +  
Sbjct: 605 VSPADISVLMVYLEQRQRRKQ 625


>gi|168218050|ref|ZP_02643675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens NCTC 8239]
 gi|182379932|gb|EDT77411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens NCTC 8239]
          Length = 630

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 388/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGYNVGLVTEERWNKFQERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI+++   
Sbjct: 607 SPADISVLLIFLEHYR 622


>gi|188587518|ref|YP_001919063.1| glucose inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|205831540|sp|B2A469|MNMG_NATTJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|179352205|gb|ACB86475.1| glucose inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 644

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/620 (44%), Positives = 391/620 (63%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G GHAGCEAA   A++GA T L+T     I  M CNPAIGG  K H+VRE+DA
Sbjct: 7   NYDLIVVGAGHAGCEAALAGARIGAKTLLLTLNLDQIALMPCNPAIGGPAKSHIVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQFR+LN +KGPAV+  R QAD+  Y+  M+  + ++ENL + Q  V
Sbjct: 67  LGGEMGKNIDDTAIQFRMLNTRKGPAVQALRAQADKIKYQERMKYILENEENLLLKQETV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N I  +V +D +   C  +V+T+GT+L+G I +G +    G  G   +  L  
Sbjct: 127 NQLMIEDNQIKGVVTKDGTYYYCEQLVITSGTYLKGRIIVGDVDYSGGPNGQQAAYGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F +      R KTGTPAR+  K++ +D+ E Q  D+    FSF       +Q+ C +T 
Sbjct: 187 DFKQHGISLMRFKTGTPARVYRKSLNFDEMEIQHGDDYPWRFSFYHSSERLKQLPCYLTF 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH+II +++  S +YSG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEGLNT  
Sbjct: 247 TNYETHKIINDSLSRSPLYSGRIEGTGPRYCPSIEDKIVRFPDKSRHQLFLEPEGLNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LP ++Q + +RTIPGLE+V I+RPGYAIEYD I+P +L  TLE K+ISGLF
Sbjct: 307 YYVQGMSTSLPLDVQERMLRTIPGLEEVEIMRPGYAIEYDCIDPTQLELTLEHKQISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A+K    + +   R+  YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQINGTSGYEEAAGQGILAGINAAQKIQGKEPVIIKRSQGYIGVLIDDLVTKGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G I E   ++F + +++    +  LKS+ LT
Sbjct: 427 RMLTSRAEYRLILRQDNADLRLTELGYQVGLIKEGNYQKFKEKLEKIESEKERLKSIKLT 486

Query: 485 S-KNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             KN+ +        G  K  T +  L  P+ S + L             V E+++I+  
Sbjct: 487 PNKNVQNFMEEHNTSGLKKPTTLFHILKRPEISYEALEYFDETRPDLPLEVTEQIEIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  E RLIP D DYS +  LS E +EKL   +P ++ QA++I G+
Sbjct: 547 YEGYIDKQVEQVQRFEKLEARLIPDDIDYSQISGLSIEAREKLQTYRPRSVGQANRISGI 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
            P+ +++L++Y+++   + +
Sbjct: 607 DPSDISVLMVYLEQLKQRAD 626


>gi|168207743|ref|ZP_02633748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
 gi|170660925|gb|EDT13608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
          Length = 630

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 392/623 (62%), Gaps = 5/623 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIK--KNTVKLNE 622
           +PA +++LLI+++  + T K  E
Sbjct: 607 SPADISVLLIFLEHYRKTGKNTE 629


>gi|110801428|ref|YP_697345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens ATCC 13124]
 gi|168211558|ref|ZP_02637183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens B str. ATCC 3626]
 gi|169343452|ref|ZP_02864452.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens C str. JGS1495]
 gi|123148451|sp|Q0TLZ5|MNMG_CLOP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110676075|gb|ABG85062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens ATCC 13124]
 gi|169298404|gb|EDS80493.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens C str. JGS1495]
 gi|170710449|gb|EDT22631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens B str. ATCC 3626]
          Length = 630

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 388/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWSKFQERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI+++   
Sbjct: 607 SPADISVLLIFLEHYR 622


>gi|218291087|ref|ZP_03495110.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238972|gb|EED06179.1| glucose inhibited division protein A [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 628

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 382/619 (61%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  AA++G  T L+T    TI  M CNP+IGG  KG +VRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAALAAARMGCRTLLLTINLDTIAYMPCNPSIGGPAKGIVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV+  R QAD+  Y L M+  +   ENL + QG V
Sbjct: 67  LGGQMGKNTDATYIQMRMLNTGKGPAVQALRAQADKAYYALNMKWTLERTENLHLKQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  +V +         VVLTTGT+LRG I+IG++   +G  G  P+  L +
Sbjct: 127 EELLVRNGRIYGVVTKSGQEFHAQAVVLTTGTYLRGRIYIGEVSYESGPNGQMPAIRLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +   F   R KTGTP R++  +I + K   Q  D     FSF  D     Q+ C +T 
Sbjct: 187 CLVDLGFRLVRFKTGTPPRINKNSIDFSKLIAQPGDPVPRHFSFDPDTPVRDQVPCWLTG 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII+EN+  S +YSG+IK  GPRYCPSIEDK+VRF +R+ HQIFLEPEG +T  
Sbjct: 247 TTEETHRIILENLDRSPLYSGEIKGTGPRYCPSIEDKVVRFRDRDTHQIFLEPEGPHTCE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q + + +IPGLE+  ++RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 307 WYVQGLSTSLPEDVQLKILHSIPGLERAEMLRPGYAIEYDAVVPTQLWPTLETKLVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAA QG++AGIN+ARK    + +  SR+D+YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQLNGTSGYEEAAGQGIMAGINAARKVKGEEPVVLSRSDAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RLT +G ++G + ER   R  +  +      + L  + + 
Sbjct: 427 RLLTSRAEHRLLLRHDNADLRLTELGYRIGLVSERAYSRVMRKKEGIQAELARLSRVKVK 486

Query: 485 SKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
            ++++     +  +      +  + L  P+ S   +  + P    +    V E+++IE  
Sbjct: 487 PQDVNGRLVELGSQPIESGMSLAQLLKRPELSYDQIRGLDPTGGVEIDPEVQEQVEIEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q    +  K  E R +P++ DY  L  L+ E +EKLS ++P  + QA++I G+
Sbjct: 547 YAGYIRKQNELIERQKRLEGRKLPENLDYMQLKGLAMEAREKLSRIRPRTVGQAARIPGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           TPA +++LL+Y+     + 
Sbjct: 607 TPADISILLVYLDAQERRA 625


>gi|169830196|ref|YP_001700354.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Lysinibacillus sphaericus C3-41]
 gi|205831530|sp|B1HPM2|MNMG_LYSSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168994684|gb|ACA42224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Lysinibacillus
           sphaericus C3-41]
          Length = 630

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/619 (45%), Positives = 394/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGAKTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +   ENL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEETENLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVTGVITQIGAIYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  DE    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTIDYDKTEIQPGDEVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKEELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL  +  K+G + + R  +F           + L+ +++ 
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLLELAYKIGMVPQERYDKFNAKKALIENEIARLREIIIK 488

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   + S   S  +DG      + L  P+   + + S+ P   +F+  V E+++I+
Sbjct: 489 PNEATQAVIRSAGGSELKDGIR--GADLLKRPEMHYEMISSLIPADIEFTEEVKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + +++ +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS+I 
Sbjct: 547 LKYEGYIEKALLQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADISILLVYIEQGKI 625


>gi|116874161|ref|YP_850942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123464237|sp|A0AMD1|MNMG_LISW6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116743039|emb|CAK22163.1| glucose-inhibited division protein A [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 629

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/619 (42%), Positives = 374/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DHLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T  +   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVDMMLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK    + I   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFDKEPIILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFITDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|302608314|emb|CBW44763.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Marinobacter
           hydrocarbonoclasticus]
          Length = 628

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 403/617 (65%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMARATDQAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRHMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVVGVVTQTGIRFNAKTVVLTTGTFLGGVIHIGMQNHAGGRAGDAPANALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+ GRLKTGTP R+D +T+ +   ++Q+ D+     SF+  +  +  QI C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARTVDFSAMQQQWGDDPTPVMSFIGSRDEHPEQICCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEETHDIIRSGFDRSPMFAGNIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +R+IPG E  +I+RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLKAVRSIPGFENAHILRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++   +     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASLRAQDKEEWYPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F++  +     RS L+S  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVDDERWQKFSEKCEGIAKERSRLESTRIH 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +    +    +   + ++  E L  P+    ++  I  +  +    V ++++IE  
Sbjct: 487 PNTEAGERANGYLKQPMTRDQSLAELLRRPEIVYDHIAEIGAERAE-DPNVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQADEIERLRKNENTALPLDLDYDVIGGLSNEIKQKLKDVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++ +L+++KK  +
Sbjct: 606 TPAAVSQILVHLKKRDL 622


>gi|241889411|ref|ZP_04776712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella haemolysans ATCC 10379]
 gi|241863954|gb|EER68335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella haemolysans ATCC 10379]
          Length = 627

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/624 (43%), Positives = 380/624 (60%), Gaps = 7/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  A++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHAASRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+L M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVEYQLEMKRILEDTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +  T+++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIEDNKVVGLRTMLGTAYKAKTIIITTGTYLRGEIVIGDIKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + KT  Q  D+    FS+ T +    Q+ C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSKTAIQPGDDEEHAFSYETKEFVKDQVPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNTSTHEIIDKNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++Q   +R+I GLE   I+R GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYVQGLSTSLPDDVQRDMVRSIAGLENAVIMRNGYAIEYDAVNPTTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKVLGEEPMILGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT      G + E R   F +           LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTEERYNIFCEKRSMVADEIERLKTFRI 485

Query: 484 TS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T      + L+  + +  +DG    A + L  P+ S  N+  +  D       V+E+++I
Sbjct: 486 TPTAATLEKLAELNSAEIRDGI--LAIDMLRRPELSHANVLYLANDKTVLPKDVVEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K   +  IP D +Y  +P+L+ E +EKL  + P  + QAS+I
Sbjct: 544 EVKYEGYIKKSIQQVEKLKKMNEMKIPTDLNYDDVPSLALEAREKLKKVLPLTIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ PA +++LL+Y+++     NE
Sbjct: 604 SGVNPADISILLVYLEQRRGMNNE 627


>gi|168214842|ref|ZP_02640467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens CPE str. F4969]
 gi|182626428|ref|ZP_02954181.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens D str. JGS1721]
 gi|170713742|gb|EDT25924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens CPE str. F4969]
 gi|177908302|gb|EDT70855.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens D str. JGS1721]
          Length = 630

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 388/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI+++   
Sbjct: 607 SPADISVLLIFLEHYR 622


>gi|238025741|ref|YP_002909972.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Burkholderia glumae BGR1]
 gi|237874935|gb|ACR27268.1| Glucose inhibited division protein A [Burkholderia glumae BGR1]
          Length = 656

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/627 (45%), Positives = 384/627 (61%), Gaps = 15/627 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGVKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRSRLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 DDLIVEGERVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNHTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQIECGI 242
              +     GRLKTGTP R+DG++I + K E+Q  D   +P FSF+     + RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRSIDFSKLEEQPGDLDPVPVFSFLGRAEQHPRQLPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP ++Q   + ++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 306 NEFYPNGISTSLPFDVQLDLVHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETKVIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ R +   +  C  R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGRYAQDKEAWCPRRDQAYLGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G +LG + + R   F++     +     L++  
Sbjct: 426 PYRMFTSRAEYRLSLREDNADMRLTEMGRELGVVDDVRWDAFSRKRDAVSRETERLRATW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNL----------FSICPDARKFS 529
           +T K L    +T++  K      +  E L  P  S   +               D     
Sbjct: 486 VTPKTLAVEEATALLGKAIDHEYSLAELLRRPGVSYAGVCGLRGGECAPAEPLADDPVLL 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + + E+++I   Y  Y  RQ  E +     E   +P   DY+ +  LS E ++KL+  +P
Sbjct: 546 AQIEEQIEIGIKYQGYIERQAGEIERNGAHENTRLPDGIDYAEVRGLSFEARQKLNQHRP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKN 616
             + QAS+I G+TPAA++LL++++K+ 
Sbjct: 606 ETIGQASRISGITPAAISLLMVHLKRG 632


>gi|110802913|ref|YP_699903.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens SM101]
 gi|123145822|sp|Q0SPQ4|MNMG_CLOPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110683414|gb|ABG86784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens SM101]
          Length = 630

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 388/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARVNKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFQERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI+++   
Sbjct: 607 SPADISVLLIFLEHYR 622


>gi|297585587|ref|YP_003701367.1| glucose inhibited division protein A [Bacillus selenitireducens
           MLS10]
 gi|297144044|gb|ADI00802.1| glucose inhibited division protein A [Bacillus selenitireducens
           MLS10]
          Length = 628

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 390/621 (62%), Gaps = 3/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GHAG EA   +A++GA+T ++T     +  M CNP++GG  KG +VRE
Sbjct: 4   FGGKFDVIVVGAGHAGVEAGLASARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D   IQ R+LN  KGPAVR  R QAD+ +Y+  M++ I   +NL + Q
Sbjct: 64  IDALGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFMYQHEMKKVIEDTDNLLLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  ++ Q  +     +V++TTGT+LRG + IG+L   +G     PS +
Sbjct: 124 GMVEELIVEDDQVKGVITQTGARYEADSVIITTGTYLRGKVIIGELSYESGPNNMQPSVN 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  F+  R KTGTP R++G +I + +TE Q  DE    FS+ T      Q+ C 
Sbjct: 184 LSHHMKELGFEMVRFKTGTPPRVNGHSIDYSQTEIQPGDEEPRAFSYETTAFITDQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+ ETH +I  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG N
Sbjct: 244 LTYTSPETHELINANLHRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G+ST+LPE++QH+ ++T+PGLE V ++RPGYAIEYD I P +L+P+LETK+IS
Sbjct: 304 TQEVYVQGLSTSLPEDVQHEILKTVPGLESVRMMRPGYAIEYDAIVPTQLWPSLETKRIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QGL+AGIN+A K  + + +   R+++YIGV+IDDL +KG  
Sbjct: 364 GLFTAGQINGTSGYEEAAGQGLMAGINAALKVQEKEPLILDRSEAYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS- 480
           EPYR+ TSRAE+R+ LR DNAD RLT  G ++G + + R + F +   E       L+  
Sbjct: 424 EPYRLLTSRAEFRLLLRHDNADLRLTEKGYEIGLVNQNRFEGFEQKKAEIAKEIKRLRKA 483

Query: 481 -LVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +  T +N      +      +  +A   +  P+ S   + ++ P     +  V E+++I
Sbjct: 484 IIKATPENNQVLEDLGASPLKEAMSADVLIKRPELSYSLVDALVPAETVLTDDVKEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  +Q+ + +     E R IP+D DY S+  L+ E ++KL+ ++P ++ QAS++
Sbjct: 544 QIKYEGYIAKQLEQVERSLKMENRKIPEDIDYLSINGLAIEARQKLNEVRPISVGQASRV 603

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+ P+ +++LL+Y+++  ++
Sbjct: 604 SGVNPSDISVLLVYLEQGRLQ 624


>gi|224823521|ref|ZP_03696630.1| glucose inhibited division protein A [Lutiella nitroferrum 2002]
 gi|224603976|gb|EEG10150.1| glucose inhibited division protein A [Lutiella nitroferrum 2002]
          Length = 630

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/625 (45%), Positives = 388/625 (62%), Gaps = 5/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G ST L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   TFDVIVVGGGHAGTEAALAAARMGCSTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q+NL + Q  V
Sbjct: 66  LGGAMALATDIGGIQFRTLNASKGPAVRATRAQADRVLYKAAIRHVLENQDNLTLFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++  +       R  TVVLT GTFL G IH+G      GR GD+ +++L  
Sbjct: 126 DDLLIEGDRVAGAITAIGITFRAKTVVLTAGTFLSGKIHVGLENYTGGRAGDAAASTLGA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
              + D   GRLKTGTP R+DG+T+ +   E+Q  D     FS+   + +  +Q+ C IT
Sbjct: 186 RLRELDLPVGRLKTGTPPRIDGRTVDFSVMEEQPGDTPEPVFSYRGSRSLHPKQLPCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II    + S +++G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T 
Sbjct: 246 HTNERTHEIIRSGFERSPMFTGVIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY +P+ L  TLETK I GL
Sbjct: 306 EFYPNGISTSLPFDVQLAAVRSIRGMENAHILRPGYAIEYDYFDPRGLKSTLETKSIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+A  S   D  C  R ++Y+GV++DDL +KGV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAALYSRDQDGWCPRRDEAYLGVLVDDLITKGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT  G +LG +G+ +   F +        ++ LK+  L
Sbjct: 426 YRMFTSRAEFRLQLREDNADLRLTEAGRRLGLVGDAQWDAFCRKRDAVEAEKTRLKTTYL 485

Query: 484 TSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
                   +   +  K   +    ++ L  PD S   L ++           V E+++I+
Sbjct: 486 HPAKVDMAAVAQLLGKPIEREYNLHDLLKRPDVSYTALMTLAEAGGGVDDGAVAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E       E   +P D DYS +  LS E+++KL+  +P  L QAS+I+
Sbjct: 546 VKYQGYIDRQNDELARRDNLEDVRLPADIDYSLVKGLSKEVQQKLNSQRPETLGQASRIQ 605

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIV 624
           G+TPAA+ LL++++K+      +  
Sbjct: 606 GITPAAVALLMVHLKRGFADAKKTA 630


>gi|92115410|ref|YP_575338.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chromohalobacter salexigens DSM 3043]
 gi|122419017|sp|Q1QSB9|MNMG_CHRSD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91798500|gb|ABE60639.1| glucose inhibited division protein A [Chromohalobacter salexigens
           DSM 3043]
          Length = 631

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 387/617 (62%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFRVLN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAHATDLGGIQFRVLNARKGPAVRATRAQADRVRYKAAIRGMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q    +   +VVL TGTFL GVIHIG      GR GD PSN+L   
Sbjct: 127 DLIVENDTVRGVVTQTGIRVFGESVVLCTGTFLGGVIHIGLDHHAGGRAGDPPSNALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP RLD K++ +   E Q  D+     S++  +  + RQ+ C I  
Sbjct: 187 LRALPFHVDRLKTGTPPRLDAKSVDFSVLETQPGDDPTPVMSYLGRRDQHPRQVACHIAH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I   GPRYCPSIEDK+ RF +++ HQIF+EPEGL+T  
Sbjct: 247 TNARTHEIIHANLDRSPMYSGVIGGVGPRYCPSIEDKVNRFADKSSHQIFVEPEGLDTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P++L  +LETK I  LF
Sbjct: 307 LYPNGISTSLPFDVQFEVVRSIKGFENAHITRPGYAIEYDFFDPRDLKHSLETKFIHNLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR++   D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGLNAARRAQGQDAWSPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT IG +LG + + R   F+   +        L+   + 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTEIGRELGLVDDTRWAHFSTKREAIARETERLRETWVQ 486

Query: 485 SKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  +  +S K D    +     + L  P+ +  +L     DA +    V E++QI++ 
Sbjct: 487 PSSELAKRLSGKLDKPLAREYRLADLLKRPELNHADLAD---DAPELDPAVAEQVQIQAK 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E   ++  E   +P+D DY+ +  LS+E+++KL   +P  L QA +I G+
Sbjct: 544 YQGYIARQQDEIDRLRRHEALRLPEDLDYARIDGLSHEIRQKLEAARPETLAQAGRISGV 603

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LLL+++KK  +
Sbjct: 604 TPAAVSLLLVHLKKRRL 620


>gi|187930588|ref|YP_001901075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia pickettii 12J]
 gi|238691852|sp|B2UGW0|MNMG_RALPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|187727478|gb|ACD28643.1| glucose inhibited division protein A [Ralstonia pickettii 12J]
          Length = 649

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/632 (45%), Positives = 385/632 (60%), Gaps = 15/632 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLVVEGDRVIGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRSIDFSVLEEQPGDLDPVPVFSFMGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLAT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K ISG
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +    D     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKDAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEVGRTLGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQN----------LFSICPDARKFS 529
           +    L    +  +  K   +     + L  P+ + +           L S   +    +
Sbjct: 486 VNPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLVGMQGGKYALESPLAEDPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP
Sbjct: 546 EQIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             + QAS+I G+TPAA++LLL+++KK  ++  
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLRGQ 637


>gi|120556790|ref|YP_961141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter aquaeolei VT8]
 gi|166222941|sp|A1U7I5|MNMG_MARAV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120326639|gb|ABM20954.1| glucose inhibited division protein A [Marinobacter aquaeolei VT8]
          Length = 628

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 403/617 (65%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMARATDQAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRHMLENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD+P+N+L   
Sbjct: 127 DLIVENDQVVGVVTQTGIRFNAKTVVLTTGTFLGGVIHIGMQNHAGGRAGDAPANALAKR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+ GRLKTGTP R+D +T+ +   ++Q+ D+     SF+  +  +  QI C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARTVDFSAMQQQWGDDPTPVMSFIGSRDEHPEQICCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEETHDIIRSGFDRSPMFAGNIEGVGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +R+IPG E  +I+RPGYAIEYDY+NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLKAVRSIPGFENAHILRPGYAIEYDYLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++   +     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASLRARDQEEWYPRRDEAYLGVLVDDLITMGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + + R ++F++  +     RS L+S  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGRKLGLVDDERWQKFSEKCEGIAKERSRLESTRIH 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +    +    +   + ++  E L  P+    ++  I  +  +    V ++++IE  
Sbjct: 487 PNTEAGERANGYLKQPMTRDQSLAELLRRPEIVYDHIAEIGAERAE-DPNVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D DY  +  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQADEIERLRKNENTALPLDLDYDVIGGLSNEIKQKLKDVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++ +L+++KK  +
Sbjct: 606 TPAAVSQILVHLKKRDL 622


>gi|18311636|ref|NP_563570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens str. 13]
 gi|21263661|sp|Q8XH31|MNMG_CLOPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|18146320|dbj|BAB82360.1| glucose-inhibited division protein [Clostridium perfringens str.
           13]
          Length = 630

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 388/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++VIG GHAGCEA   AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   SYDIVVIGAGHAGCEAGLAAARMGCKTLVCTLTLDSVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ ++LN  KGPAV   R QAD++ Y+  M++ + +QENL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSKMLNTSKGPAVHSLRAQADKKKYQERMKKVLETQENLHLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ ++ +   C  V++T+GT+L+  I IG +    G  G S +N L  
Sbjct: 127 VSVEVEDGKVKGVLTKNGAFFECKAVIMTSGTYLQSRIIIGDVSYSQGPNGLSNANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    D  R KTGTPAR++ +++ + K  +Q  DE +IPFSF++  I   Q+ C +T 
Sbjct: 187 SLIDLGIDLRRFKTGTPARINKRSVDFSKMIEQPGDEEIIPFSFISGNIDRDQVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I ENI  S +Y+G IK  GPRYCPSIEDK++RF +++ HQIF+EPEG +T+ 
Sbjct: 247 TNEETHKVIQENIHRSPMYNGSIKGVGPRYCPSIEDKVMRFQDKDRHQIFIEPEGDDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q I+T+PGLE   I+R  YAIEYD I+P +L  +LE K I G F
Sbjct: 307 MYVGGMSSSLPEDVQVQMIKTVPGLENAEIMRTAYAIEYDCIDPTQLKASLEFKNIDGFF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEA AQG+VAGIN+A K    D +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPMILTRSDGYVGVLIDDLITKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + E R  +F +  Q        LK L +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADFRLTEIGHNVGLVTEERWNKFKERKQNLERELERLKELQIT 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++  I      +  K    YE +  P+    +L  + P+       + +++ I + 
Sbjct: 487 NKTENNEKIVELGSTELKKPIRMYELIKRPELDYFSLACLDPERPDLPKDIGDQINIIAR 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ +  + K  EK+++P+D DY+ + +L  E  +KL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIQTQLEQVAQFKKFEKKVLPEDLDYNDVNSLRIEAIQKLNKIRPLNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
           +PA +++LLI+++   
Sbjct: 607 SPADISVLLIFLEHYR 622


>gi|300721123|ref|YP_003710391.1| glucose-inhibited division oxidoreductase-like protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627608|emb|CBJ88127.1| glucose-inhibited division protein, oxidoreductase-like with
           FAD/NAD(P)-binding domain [Xenorhabdus nematophila ATCC
           19061]
          Length = 618

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/614 (46%), Positives = 392/614 (63%), Gaps = 5/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EHFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM +  D AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGLMAKATDQAGIQFRTLNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQP 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++ +V + +   +  +VVLT GTFL G IHIG      GR GD P+ SL 
Sbjct: 125 VEDLIVENNTVTGVVTRMSLKFKAKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAISLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
           +   +      RLKTGTP R+D ++I + + E+Q  D     FSFM +   + Q I C I
Sbjct: 185 HRLRELPLRVARLKTGTPPRIDARSIDFSQLEQQLGDNPTPVFSFMGNAAQHPQQILCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL +
Sbjct: 245 THTNEKTHEVIRSNLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADRNAHQIFLEPEGLTS 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q Q + ++ G+E   IIRPGYAIEYD+ +P+ L  TLE+K I G
Sbjct: 305 NEIYPNGISTSLPFDVQMQIVHSMKGMENARIIRPGYAIEYDFFDPRGLKQTLESKFIHG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARYATGEEGWFPRRDQAYIGVLVDDLCTLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K +++ ++     R  L+++ 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTEQGRRLGLVDDLRWKHYSRKVEMIEQERQRLRNIW 484

Query: 483 LTSK--NLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQI 538
           +     NL   +   K    K     + L  P+ + + L S+   A   +     ++++I
Sbjct: 485 VHPHSDNLGDINQMLKTPLSKEANGEDLLRRPEMNYELLTSLSRFAPGLTEAQAADQVEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KL+  KP ++ QAS+I
Sbjct: 545 QVKYEGYIARQQEEIEKQLRNENTALPVDLDYQQVSGLSNEVIAKLNDHKPSSIGQASRI 604

Query: 599 EGMTPAALNLLLIY 612
            G+TPAA+++LL++
Sbjct: 605 SGITPAAISILLVW 618


>gi|224498351|ref|ZP_03666700.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes Finland 1988]
          Length = 628

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/619 (42%), Positives = 375/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T  +   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVDMMLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +R+IPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRSIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|294143117|ref|YP_003559095.1| glucose-inhibited division protein A [Shewanella violacea DSS12]
 gi|293329586|dbj|BAJ04317.1| glucose-inhibited division protein A [Shewanella violacea DSS12]
          Length = 630

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/622 (46%), Positives = 387/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLKLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   ++ +V Q       +TVVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QGVDDLIVKNGRVTGVVTQMGLAFEAATVVLTAGTFLSGKIHIGLQNYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   +     GRLKTGTP RLD  TI +D   +Q  D  L   SF+ D K   RQI C
Sbjct: 183 LADRLRELPIRIGRLKTGTPPRLDANTINFDLMAEQKGDTPLPVMSFVGDVKDHPRQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II E +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YVTHTNERTHDIIREGLDRSPLYSGVIEGIGPRYCPSIEDKINRFADKTSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +RTI G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQINLVRTIKGMENAEIIRPGYAIEYDYFDPRDLKNSLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N++ +    +     R  +Y+GV++DDL++ G 
Sbjct: 363 GGLFFAGQINGTTGYEEAAAQGLLAGMNASLQVQGKESWSPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  +F++  +        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDNRWIQFSEKRESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           L +   +     ++ +      +  +  + L  P+     L S+             E++
Sbjct: 483 LWVHPNSPLLGVLNPELNTPISREASFEDLLRRPEMDYPKLMSLEGFGPGLEDKRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QAS
Sbjct: 543 QIQVKYSGYIQRQQDEIDKALKHETTGLPLDLDYQEVPGLSNEVIAKMNEHKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++K+  +
Sbjct: 603 RISGMTPAAISILLVHLKRRGL 624


>gi|57651105|ref|YP_187523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus COL]
 gi|151222823|ref|YP_001333645.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161353516|ref|YP_501497.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|161510920|ref|YP_001576579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|162138569|ref|YP_495279.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|258451370|ref|ZP_05699401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5948]
 gi|262049466|ref|ZP_06022338.1| glucose-inhibited division protein A [Staphylococcus aureus D30]
 gi|262051897|ref|ZP_06024112.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|282920716|ref|ZP_06328435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9765]
 gi|284023034|ref|ZP_06377432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 132]
 gi|294849825|ref|ZP_06790565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9754]
 gi|71152073|sp|Q5HCI4|MNMG_STAAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|172049080|sp|A6QKK1|MNMG_STAAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039363|sp|A8YYS0|MNMG_STAAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831559|sp|Q2FDE9|MNMG_STAA3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831560|sp|Q2FUQ3|MNMG_STAA8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57285291|gb|AAW37385.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus COL]
 gi|150375623|dbj|BAF68883.1| glucose-inhibited division protein A [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160369729|gb|ABX30700.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257860900|gb|EEV83717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Staphylococcus aureus A5948]
 gi|259160224|gb|EEW45253.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|259162463|gb|EEW47033.1| glucose-inhibited division protein A [Staphylococcus aureus D30]
 gi|282594124|gb|EFB99112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9765]
 gi|294823373|gb|EFG39802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus A9754]
 gi|315197915|gb|EFU28248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141414|gb|EFW33257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144397|gb|EFW36162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329731594|gb|EGG67954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 625

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  +  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILELLEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|153206122|ref|ZP_01945385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii 'MSU Goat Q177']
 gi|165918750|ref|ZP_02218836.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 334]
 gi|212217717|ref|YP_002304504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii CbuK_Q154]
 gi|120577252|gb|EAX33876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii 'MSU Goat Q177']
 gi|165917578|gb|EDR36182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 334]
 gi|212011979|gb|ACJ19359.1| glucose inhibited division protein A [Coxiella burnetii CbuK_Q154]
          Length = 627

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 399/621 (64%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVIV+GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIVVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +  +   RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSDQPLPLMSYWSHGEDRPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN HQ+FLEPEGLN
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q  FI +I GLEK +I RPGYAIEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
            +  K+  + +I  +      +  +A + L  P+ +   L  I           V E++ 
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPSVAEQID 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QAS+
Sbjct: 545 IQAKYEGYLTHQLAEIDRQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLL+++KK  +
Sbjct: 605 IPGITPAAISLLLVHLKKKEL 625


>gi|126651989|ref|ZP_01724181.1| glucose-inhibited division protein A [Bacillus sp. B14905]
 gi|126591258|gb|EAZ85367.1| glucose-inhibited division protein A [Bacillus sp. B14905]
          Length = 630

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/619 (44%), Positives = 398/619 (64%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GA+T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGANTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +   ENL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEETENLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVTGVITQIGAIYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  DE    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTIDYDKTEIQPGDEVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKEELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL  +  K+G + + R ++F +     +   + L+ +++ 
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLLELAYKIGMVPQERYEKFVEKKALIDNEIARLREIIIK 488

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   + S   S  +DG      + L  P+   + + S+ P   +F+  + E+++I+
Sbjct: 489 PNEATQVVIRSAGGSELKDGIR--GADLLKRPEMHYEMISSLIPADIEFTEEIKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + +++ +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS+I 
Sbjct: 547 LKYEGYIEKALLQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADISILLVYIEQGKI 625


>gi|16802001|ref|NP_472269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria innocua Clip11262]
 gi|21263670|sp|Q926U8|MNMG_LISIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16415483|emb|CAC98167.1| gidA [Listeria innocua Clip11262]
          Length = 629

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 377/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMMLEQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF    +     +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQRAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|299541771|ref|ZP_07052094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lysinibacillus fusiformis ZC1]
 gi|298725509|gb|EFI66150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lysinibacillus fusiformis ZC1]
          Length = 630

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/619 (44%), Positives = 391/619 (63%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIG GHAG EAA  AAK+GAST ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 9   TFDVIVIGAGHAGSEAAHAAAKMGASTLMLTINLDMIAFMPCNPSIGGPAKGIVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +    NL + QG V
Sbjct: 69  LGGVMGKVIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLEETPNLTIHQGMV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  ++ R  TVV+TTGTFLRG I IG +K  +G     PS  L +
Sbjct: 129 EELIIEDGEVKGVITQIGAVYRAKTVVVTTGTFLRGEIIIGDIKYSSGPNNQQPSIRLAD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  FD  R KTGTP R++ +TI +DKTE Q  D+    FSF T +    Q+ C +T 
Sbjct: 189 NLKELGFDLVRFKTGTPPRVNNRTINYDKTEIQPGDDVPRAFSFETTEFIMDQLPCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH II  N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 249 TSPETHEIIEANLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + +++IPGLE   ++R GYAIEYD I P +L+PTLETK+I GL+
Sbjct: 309 VYVQGLSTSLPEHVQTRLLKSIPGLENAEMMRAGYAIEYDSIVPTQLWPTLETKRIKGLY 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AG+N+A      D +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 369 TAGQINGTSGYEEAAAQGLMAGMNAAANVLGKDELILSRSDAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL  +   +G I + R   F +  +      + L+ +++ 
Sbjct: 429 RLLTSRAEYRLLLRHDNADLRLVELAYNMGMIPQERYASFNEKKELIENEIARLREVIIK 488

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   + S   S  +DG      + L  P+   + + S+ P   + +  V E+++I+
Sbjct: 489 PNEATQSVIRSVGGSELKDGIR--GADLLKRPEMHYELISSLIPAEIELADEVKEQIEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++   E + IP++ DY ++  L+ E ++KL  + P ++ QAS+I 
Sbjct: 547 LKYEGYIEKALQQVEKLHKMENKKIPENIDYDAISGLATEARQKLKQVTPLSIAQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 607 GVNPADISILLVYIEQGKI 625


>gi|332524941|ref|ZP_08401127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rubrivivax benzoatilyticus JA2]
 gi|332108236|gb|EGJ09460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rubrivivax benzoatilyticus JA2]
          Length = 650

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/641 (45%), Positives = 400/641 (62%), Gaps = 22/641 (3%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M++ +++DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV
Sbjct: 1   MLHPQAFDVIVVGGGHAGTEAALAAARMGCTTLLLTHNIETLGQMSCNPSIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL +
Sbjct: 61  KEVDALGGAMAEATDESGIQFRILNGSKGPAVRATRAQADRVLYKAAIRRRLENQPNLWL 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q        E + ++ ++ Q         VVLT GTFL G +H+G     AGR GD  +
Sbjct: 121 FQQACDDLIVEGDRVTGVITQIGLRFNARAVVLTAGTFLDGRVHVGLENYRAGRAGDPAA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQ 237
            +L     +     GRLKTGTP R+DG++I + + E+Q  D   +P F F+ T ++  RQ
Sbjct: 181 TTLSARLKELKLPQGRLKTGTPPRIDGRSIDFSRLEEQPGDLDPVPVFGFLGTPEMHPRQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT TN  TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEP
Sbjct: 241 LPCWITHTNERTHEIIRSGFDRSPMFTGIIEGVGPRYCPSIEDKINRFADKSSHQIFLEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL T   YPNG+ST+LP ++Q   IRT+PGLE  +I+RPGYAIEYDY +P+EL P+ ET
Sbjct: 301 EGLTTHEFYPNGVSTSLPFDVQLGAIRTMPGLENAHILRPGYAIEYDYFDPRELKPSFET 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           + I GLF AGQINGTTGYEEAAAQGL AG N+A ++   +     R  +Y+GV++DDL +
Sbjct: 361 QAIGGLFFAGQINGTTGYEEAAAQGLFAGANAALQAQGREPWTPRRDQAYLGVLVDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG+ EPYRMFTSRAEYR+ LR DNAD RLT IG +LG +G+ R   F +  +     +  
Sbjct: 421 KGITEPYRMFTSRAEYRLQLREDNADLRLTAIGRELGLVGDARWDAFCRKRERLEREQQR 480

Query: 478 LKSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA---- 525
           LKS  +    L++        K         + L  P      +++       PD     
Sbjct: 481 LKSTWVRPATLAAADAERFIGKALEHEYNLADLLRRPGVDFDAVWAAAAAAGVPDVVSRG 540

Query: 526 -------RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                   + +  VIE+ +I   YA Y  +Q+ E +     E+  +P++ DY+ + ALS 
Sbjct: 541 TLQAEYGAREADAVIEQAEIAIKYAGYIDKQVDEVQRAAHYEQMKLPEELDYAQVTALSF 600

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+++KL+  +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 601 EVRQKLTRHRPETLGQASRISGVTPAAISLLLVHLKKGRFK 641


>gi|187933395|ref|YP_001887733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B str. Eklund 17B]
 gi|187721548|gb|ACD22769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B str. Eklund 17B]
          Length = 626

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/616 (45%), Positives = 397/616 (64%), Gaps = 3/616 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVVVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N I+ ++ ++ ++ R   V+L+TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEDNKITGVITKNGAIFRAKAVILSTGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSGNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKENIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    + +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEEPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G + E R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTEERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 NLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             ++  +      +  K  + YE +  P+    +L  + P+  + S  + E++ I + Y 
Sbjct: 491 RETNEFLLASGSAELKKPISFYELIKRPEVDYFSLKDLDPEREELSEDIGEQINIIAKYE 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ +KP ++ QAS+I G++P
Sbjct: 551 GYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIKPISIGQASRISGVSP 610

Query: 604 AALNLLLIYIKKNTVK 619
           A +++LLIY++    K
Sbjct: 611 ADISVLLIYLEHYYNK 626


>gi|16804847|ref|NP_466332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes EGD-e]
 gi|47093269|ref|ZP_00231040.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           4b H7858]
 gi|217965983|ref|YP_002351661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HCC23]
 gi|224502776|ref|ZP_03671083.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-561]
 gi|226225360|ref|YP_002759467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes Clip81459]
 gi|254824825|ref|ZP_05229826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-194]
 gi|254827378|ref|ZP_05232065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL N3-165]
 gi|254930916|ref|ZP_05264275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HPB2262]
 gi|255028099|ref|ZP_05300050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes LO28]
 gi|284800303|ref|YP_003412168.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5578]
 gi|284993488|ref|YP_003415256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5923]
 gi|290891991|ref|ZP_06554988.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-071]
 gi|21263664|sp|Q8Y3M5|MNMG_LISMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|16412310|emb|CAD01023.1| gidA [Listeria monocytogenes EGD-e]
 gi|47018343|gb|EAL09105.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           4b H7858]
 gi|217335253|gb|ACK41047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HCC23]
 gi|225877822|emb|CAS06537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599756|gb|EEW13081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL N3-165]
 gi|284055865|gb|ADB66806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5578]
 gi|284058955|gb|ADB69894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 08-5923]
 gi|290558585|gb|EFD92102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-071]
 gi|293582462|gb|EFF94494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes HPB2262]
 gi|293594065|gb|EFG01826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-194]
 gi|307572400|emb|CAR85579.1| glucose-inhibited division protein A [Listeria monocytogenes L99]
 gi|328468282|gb|EGF39288.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 1816]
 gi|332313240|gb|EGJ26335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria monocytogenes str. Scott A]
          Length = 629

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 376/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|88797178|ref|ZP_01112768.1| glucose-inhibited division protein A [Reinekea sp. MED297]
 gi|88780047|gb|EAR11232.1| glucose-inhibited division protein A [Reinekea sp. MED297]
          Length = 628

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/624 (46%), Positives = 395/624 (63%), Gaps = 4/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + +DVIVIGGGHAG EAA  +A+ GA T L+TH   TIG MSCNPAIGG+GK HLV+E
Sbjct: 3   FPKQFDVIVIGGGHAGTEAALASARTGAQTLLLTHNIDTIGVMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D AGIQ+R+LN +KGPAVR  R QADR+LYR A+++ + SQ NL++  
Sbjct: 63  IDALGGAMARATDLAGIQWRILNSRKGPAVRATRAQADRQLYRAAIRQIVESQPNLEIFA 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + +   V Q    I    VVLT GTFL G IH+G      GRMGD+PS S
Sbjct: 123 QAADDLILDGDRVVGAVTQTGIRILAKAVVLTAGTFLNGKIHVGTDNYAGGRMGDTPSIS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L     +    TGRLKTGTPAR+D +++ +    +Q  D  L   S++   +   RQI C
Sbjct: 183 LAERLKELPIRTGRLKTGTPARIDARSVDFSVMTEQPGDAPLPVMSYIGRVEDHPRQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ T  +TH II  N+  SA++SG+I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 YISHTTEQTHDIIRSNLDRSAMFSGNIEGTGPRYCPSIEDKITRFADKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q  FIRTI G E  +I RPGYAIEYDY NP++L  +LE+K I
Sbjct: 303 TTYELYPNGISTSLPFDVQVSFIRTIRGFENAHITRPGYAIEYDYYNPQDLKHSLESKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA AQGL+AG+N+ARK+ + D     R ++YIGV++DDL + G 
Sbjct: 363 GSLFFAGQINGTTGYEEAGAQGLLAGLNAARKAREQDVWYPRRDEAYIGVLVDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R   F    +     ++ +K+
Sbjct: 423 KEPYRMFTSRAEHRLLLREDNADARLTETGRQLGLVDDERWSAFCTKQENIAREQARVKT 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +     ++  IS K      +  +  + L  P+    ++ +  P     S    E+++
Sbjct: 483 TYIQPNTAAAAQISEKLPQPLTREFSLGDLLKRPELGYSDIAAAMPPEAPLSLYEAEQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  RQ  E + +K  E   +P+  D  S+  LSNE+K+KL  ++P  L QAS+
Sbjct: 543 ISAKYEGYIQRQQDEIESLKRHENTRLPETLDIDSIGGLSNEVKQKLKEVRPETLAQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+TPAA+++LL++IKK+     
Sbjct: 603 ISGVTPAAVSMLLVHIKKHNASRQ 626


>gi|253730396|ref|ZP_04864561.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253725876|gb|EES94605.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 625

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 395/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R I  +ENL ++Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E N +  +     +      V++TTGTFLRG I +G +K  +G     PS +
Sbjct: 121 GMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +  FD  R KTGTP R++ KTI + KTE Q  D+    FSF T +    Q+ C 
Sbjct: 181 LSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE +Q Q + TIPGLEK +++R GYAIEYD I P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A K         SR+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I E R  RF +  Q+ +     L  +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDMGHELGMISEERYARFNEKRQQIDAEIKRLSDI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A + L  P+ +   +  +  +  + ++ V E++
Sbjct: 481 RIKPNEHTQAIIEQHGGSRLKDGI--LAIDLLRRPEMTYDIILELLEEEHQLNADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + + +++K  E++ IP+D DYS + +L+ E +EKLS +KP N+ QAS
Sbjct: 539 EIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LLIY+++  ++ 
Sbjct: 599 RISGVNPADISILLIYLEQGKLQR 622


>gi|254427865|ref|ZP_05041572.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax sp. DG881]
 gi|196194034|gb|EDX88993.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alcanivorax sp. DG881]
          Length = 631

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/625 (47%), Positives = 392/625 (62%), Gaps = 4/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ + VIVIGGGHAG EAA  +A++G ST L+TH   T+G MSCNPAIGG+GK HLVRE
Sbjct: 3   FSQRFGVIVIGGGHAGTEAALASARMGVSTLLLTHNIETLGQMSCNPAIGGIGKSHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D  GIQFRVLN +KGPAVR  R QADRELY+ A++  + +Q++L + Q
Sbjct: 63  IDALGGAMGRATDKGGIQFRVLNARKGPAVRATRAQADRELYKAAIRGTLENQQDLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V           VVLT GTFL GVIHIG      GR GD PSN+
Sbjct: 123 QAVDDLIVENGRCVGVVTNMGLRFMADAVVLTAGTFLGGVIHIGMDNHQGGRAGDQPSNA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L     +  F   RLKTGTP R+DGKT+ +   E+Q+ D  L   S++     + Q + C
Sbjct: 183 LARRLRELPFRVDRLKTGTPPRIDGKTVDFSVMEEQWGDSPLPVMSYLGQVEEHPQQVCC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II      S +++G I   GPRYCPSIEDK+ R+ +++ HQIF+EPEGL
Sbjct: 243 YITHTNAQTHDIIRSGFDRSPMFTGVIDGVGPRYCPSIEDKVNRYPDKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYDY NP++L  +LET+ +
Sbjct: 303 NTHELYPNGISTSLPFDVQLQAVRSIRGFENAHITRPGYAIEYDYFNPQDLKHSLETQHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+A  S   D     R ++YIGV++DDL + G 
Sbjct: 363 PGLFFAGQINGTTGYEEAGAQGLLAGLNAALLSQGKDAWTPRRDEAYIGVLVDDLITMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +        LKS
Sbjct: 423 QEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDERWAAFNAKREGMAQEEQRLKS 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +  K   + +++    K         + L  P+ +  NL      A +  S VIE+++
Sbjct: 483 TWVRPKTPQAEAVNALIEKPLAHEYNLLDLLKRPELTYANLADAVALAERPDSAVIEQME 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + YA Y  RQ  E ++++  E   +P +FDY  +  LSNE+K+KL  ++P  L QA +
Sbjct: 543 ILAKYAGYIDRQADEIEKLRAAETTALPAEFDYGQVKGLSNEVKQKLGEIRPQTLGQAGR 602

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G+TPAA++LL+IY+KK+  +   
Sbjct: 603 IPGVTPAAISLLMIYLKKHHHQKKA 627


>gi|118591440|ref|ZP_01548838.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
 gi|118436112|gb|EAV42755.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
          Length = 628

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/622 (57%), Positives = 461/622 (74%), Gaps = 4/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ ++DV+VIGGGHAGCEAAA +A+ GA+TAL+TH+  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 4   LDLTFDVVVIGGGHAGCEAAAASARAGAATALVTHRFDTIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LYR AMQREI + E L V++
Sbjct: 64  IDALDGLMGRVADKGGIQFRMLNRRKGPAVRGPRAQADRKLYREAMQREIAAVEGLSVVE 123

Query: 122 GEVAGFNTEKNI----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           GE      E++     +S I + D  +I C  +VLT+GTFLRG+IHIG  KIPAGR G++
Sbjct: 124 GEAHKIRFERDGETRSVSGIELADGRVINCRAIVLTSGTFLRGLIHIGDRKIPAGRSGEA 183

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P+  L  S  +  FD GRLKTGTPARLDG+TI WDK E+Q  DE  IPFS +TDKI   Q
Sbjct: 184 PALGLSESLEEIGFDLGRLKTGTPARLDGRTIHWDKLEEQPGDEDPIPFSTLTDKIETPQ 243

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C ITRT  ETHRII EN+  SA+YSG+IK  GPRYCPSIEDKIVRFG+R+GHQIFLEP
Sbjct: 244 IPCHITRTTPETHRIIRENLSRSAMYSGEIKGRGPRYCPSIEDKIVRFGDRDGHQIFLEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+   VYPNGIST+LPE+ Q  F++TIPGLE V +++PGYAIEYD+++P+EL PTLE 
Sbjct: 304 EGLDDHTVYPNGISTSLPEDAQIAFLKTIPGLEDVVVLQPGYAIEYDHVDPRELRPTLEA 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K+ SGL+LAGQINGTTGYEEA AQGL+AG+N+A K+         R++ YIGVMIDDL +
Sbjct: 364 KRCSGLYLAGQINGTTGYEEAGAQGLIAGLNAALKAAGKAPFVVDRSEGYIGVMIDDLIT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G+ EPYRMFTSRAEYR+SLR DNAD RLTP+G+ +GC+ + R++ F   + +    R L
Sbjct: 424 RGITEPYRMFTSRAEYRLSLRADNADQRLTPLGLAIGCVSDTRREAFETKMAKIAAAREL 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L +L +T        +   QDG  R+A++ LSYP+ + + L  I P+ +     + E++ 
Sbjct: 484 LTTLTVTPSEAQKKGLPVNQDGIRRSAFDLLSYPNVTFEGLTQIWPELKDIDPAIAEQVA 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            ++ YA Y  RQM + + +K +E   IP  FDY ++  LSNE+++KL  ++P  L QAS+
Sbjct: 544 TDALYAVYLDRQMADIEALKRDEALSIPDGFDYEAITGLSNEVRQKLIDIRPATLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           ++GMTPAAL L+L ++K+ + K
Sbjct: 604 MDGMTPAALTLILSHLKRQSQK 625


>gi|30250397|ref|NP_842467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosomonas europaea ATCC 19718]
 gi|81170562|sp|Q82S78|MNMG_NITEU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|30181192|emb|CAD86388.1| gidA; glucose inhibited division protein A [Nitrosomonas europaea
           ATCC 19718]
          Length = 639

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/629 (46%), Positives = 402/629 (63%), Gaps = 7/629 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ +D+IV+GGGHAG EAA  AA++G  T L+T    T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FSKDFDIIVVGGGHAGTEAALAAARMGQKTLLLTQNLDTLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++R + +Q +L ++Q
Sbjct: 63  IDALGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRRRLEAQPDLLLLQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V       + I+ +V           VVLT GTFL GV H+G     AGR GD  S  
Sbjct: 123 STVDDLLLNGDKITGVVTHLGMTFSARAVVLTVGTFLGGVAHVGHQNFQAGRAGDPASIR 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   + +   GRLKTGTP R+D +TI +    +Q  DE +  FSF+ +     RQI C
Sbjct: 183 LAHRLREMNLSVGRLKTGTPPRIDARTIDFRILREQPGDEPVPVFSFLGNITQHPRQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRTN  TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF ER+ H IFLEPEGL
Sbjct: 243 WMTRTNERTHEIIRTGLDRSPLYTGKIEGIGPRYCPSIEDKVVRFSERDAHTIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LETK I
Sbjct: 303 ETSEIYPNGISTSLPFDVQVELVRSIAGLENAHITRPGYAIEYDYFDPRTLKKSLETKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N++ K  + +  C SR ++YIGV++DDL ++GV
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLLAGLNASLKIKEQEPWCPSRDEAYIGVLVDDLVTRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + E R + FA   +     ++ L++
Sbjct: 423 TEPYRMFTSRAEFRLQLREDNADMRLTETGYRLGLVSEERWQAFAAKREAIETEKTRLRN 482

Query: 481 LVLTSKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQI 538
             ++   LS      +  D ++ + Y+ L  P+     L S+    +    S V ++++I
Sbjct: 483 TWISPGTLSKLQTPDQPADDRSYSLYDLLRRPEIGYAELVSLSARGQSVIDSQVAQQVEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  E       E  ++PKD DY ++  LSNE+ +KL+  +P  + QA++I
Sbjct: 543 DVKYEGYIERQRQEVVRHAQHEAMILPKDMDYRAVRGLSNEVTQKLNQHQPETIGQAARI 602

Query: 599 EGMTPAALNLLLIYIK----KNTVKLNEI 623
            G+TPAA++LLL+++K    +  VK  E+
Sbjct: 603 SGITPAAISLLLVHLKRGMARQAVKREEM 631


>gi|78043339|ref|YP_358879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123577254|sp|Q3AG55|MNMG_CARHZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77995454|gb|ABB14353.1| glucose inhibited division protein A [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 631

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/620 (44%), Positives = 391/620 (63%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  +A++G  T L+T     +  M CNPA+GG  KG +VRE+DA
Sbjct: 7   DYDVIVVGAGHAGVEAALASARMGLKTLLLTLSLDNVALMPCNPAVGGPAKGVVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y+  M++ I  QENL + Q E 
Sbjct: 67  LGGEMGINTDKTYIQIRMLNTGKGPAVRTLRAQADKRRYQEEMKKTIERQENLYLKQAET 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ +  ++     VV+T+GT+L   I IG +  P+G  G   ++ L  
Sbjct: 127 IKILVEGEKVRGVLTRTGAVFTSRAVVVTSGTYLNSRIIIGDVHYPSGPAGFPYASLLSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F  GR KTGTPAR+D +T+ + K  +Q  D+R + FS+M++ I    + C +T 
Sbjct: 187 SLADLGFKLGRFKTGTPARVDKRTVDFSKMIEQPGDDRPLYFSYMSEGIKRPNVSCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TNLETH II+EN+  S +YSG+IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+T  
Sbjct: 247 TNLETHTIILENLHRSPLYSGEIKGVGPRYCPSIEDKVVRFSDKPRHQVFLEPEGLDTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q + +RT+PGLE+V I+RP YAIEYDYI+P +L  TLE K I GLF
Sbjct: 307 MYVQGMSTSLPEDLQIKMLRTLPGLERVEIMRPAYAIEYDYIDPTQLKLTLEAKHIQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG+VAGIN+A    + +     R+++YIGVMIDDL +KGV +PY
Sbjct: 367 FAGQINGTSGYEEAAGQGIVAGINAALYVKEKEPFILKRSEAYIGVMIDDLVTKGVTDPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G K+G + E R ++F + +++ N L   L+   +T
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEKGYKIGLVTEERWRKFNERVEKINKLMEFLEENQVT 486

Query: 485 SKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +            +  EFL  P+ +++ +  I     +F   V E+++I   
Sbjct: 487 PTKRNLEIMEEYGTSPPKHGISGKEFLRRPEINMEAIEKIFAIDGQFPDDVKEQVEILVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ E +     E + +P DFDYS +  LS E  +KL+ +KP N+ QAS++ G+
Sbjct: 547 YEGYIEKQLKEIERFNKYEGKKLPPDFDYSKVKGLSAEAVQKLNAIKPENIGQASRVSGV 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPA +++LLIY++    + N
Sbjct: 607 TPADISVLLIYLESRKSEDN 626


>gi|154707156|ref|YP_001423623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii Dugway 5J108-111]
 gi|161511216|ref|NP_820901.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 493]
 gi|161831260|ref|YP_001597739.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 331]
 gi|212211701|ref|YP_002302637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii CbuG_Q212]
 gi|30581060|sp|P94613|MNMG_COXBU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039337|sp|A9KBS8|MNMG_COXBN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039338|sp|A9NBA8|MNMG_COXBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154356442|gb|ABS77904.1| glucose inhibited division protein A [Coxiella burnetii Dugway
           5J108-111]
 gi|161763127|gb|ABX78769.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coxiella burnetii RSA 331]
 gi|206584175|gb|AAO91415.2| glucose inhibited division protein A [Coxiella burnetii RSA 493]
 gi|212010111|gb|ACJ17492.1| glucose inhibited division protein A [Coxiella burnetii CbuG_Q212]
          Length = 627

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 399/621 (64%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVIV+GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIVVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +  +   RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSDQPLPLMSYWSHGEDRPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN HQ+FLEPEGLN
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEGLN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q  FI +I GLEK +I RPGYAIEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
            +  K+  + +I  +      +  +A + L  P+ +   L  I           V E++ 
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPSVAEQID 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QAS+
Sbjct: 545 IQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLL+++KK  +
Sbjct: 605 IPGITPAAISLLLVHLKKKEL 625


>gi|160895496|ref|YP_001561078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Delftia acidovorans SPH-1]
 gi|238687175|sp|A9BQJ1|MNMG_DELAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160361080|gb|ABX32693.1| glucose inhibited division protein A [Delftia acidovorans SPH-1]
          Length = 659

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/642 (44%), Positives = 392/642 (61%), Gaps = 23/642 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMALATDIGGIQFRILNSSKGPAVRATRAQADRILYKAAIRDMLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGVRFRSRTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFMTDK 232
           SL +   +     GRLKTGTP RLDG++I + + E+Q  D             FSF+ + 
Sbjct: 182 SLSSRLKELQLPQGRLKTGTPPRLDGRSIDFSQCEEQPGDGMPGGVNEGVLPVFSFIGNA 241

Query: 233 -ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            +  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++  H
Sbjct: 242 AMHPRQMPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKESH 301

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGL T+  YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P+ L
Sbjct: 302 QIFLEPEGLTTNEFYPNGISTSLPFDIQYELVRSMKGLENAHILRPGYAIEYDYFDPRSL 361

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +    +     R ++Y+GV+
Sbjct: 362 KSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGLNAALQCRGQEAWLPRRDEAYLGVL 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G  +G + + R   F++     
Sbjct: 422 VDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRAMGLVDDARWDAFSRKRDAV 481

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
           +     LKS  +  + +    S  +  K   +    ++ L  PD     L S+       
Sbjct: 482 SRETERLKSTWVNPRIVTPEESERVLGKSIEREYNLFDLLRRPDVGYGKLMSLNEGRYAS 541

Query: 525 -------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                      S+ V+E+++I + YA Y  RQ  E +     E   +P + DY  +PALS
Sbjct: 542 ADVQPDVLGDLSASVVEQVEIAAKYAGYIDRQKDEVQRAAHFENLRLPAELDYMQVPALS 601

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+++ L   +P  L QAS++ G+TPAA++LL++++KK   +
Sbjct: 602 FEVRQSLQKHRPETLGQASRMSGVTPAAISLLMVHLKKGGFR 643


>gi|110807565|ref|YP_691085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Shigella flexneri 5 str. 8401]
 gi|110617113|gb|ABF05780.1| glucose-inhibited division [Shigella flexneri 5 str. 8401]
          Length = 602

 Score =  789 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/597 (46%), Positives = 379/597 (63%), Gaps = 5/597 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL GLM +  D AGIQFR+LN  
Sbjct: 1   MGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNAS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR  YR A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVRYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IHIG      GR GD PS  L     +     GRLKTGTP R+D 
Sbjct: 121 AKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +TI +    +Q  D  +  FSFM +  +  +Q+ C IT TN +TH +I  N+  S +Y+G
Sbjct: 181 RTIDFSVLAQQHGDNPMPVFSFMGNASLHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R+
Sbjct: 241 VIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           + G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 MQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+AR S   +    +R+ +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTR 502
           LT IG +LG + + R  RF + ++     R  LKS  +T    ++  ++        +  
Sbjct: 421 LTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREA 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           +  + L  P+ + + L ++ P A         E+++I+  Y  Y  RQ  E ++    E 
Sbjct: 481 SGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNEN 540

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK  +
Sbjct: 541 TLLPATLDYRQISGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM 597


>gi|326390369|ref|ZP_08211928.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993646|gb|EGD52079.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 633

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/622 (44%), Positives = 386/622 (62%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVVVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+
Sbjct: 67  LGGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFNSGPSGLFPANELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T 
Sbjct: 187 TLKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  
Sbjct: 247 TNKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNEPPVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R ++F K   +       L  +++ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMQRLPGVMVR 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  K      T    Y  L  P+   ++   +  D        V E++ I  
Sbjct: 487 PSEEVNNFLISKGSTPLVTGIDLYTLLKRPEIDYKSTKFLDKDRPHDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +  K  E + IP+D DY  +  LSNE KEKL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYIIKQLRQVEHFKALENKKIPEDIDYYQIHGLSNEAKEKLTKIRPTSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLIY+++     ++
Sbjct: 607 VSPADISVLLIYMQQLRRNKDD 628


>gi|317401627|gb|EFV82253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Achromobacter xylosoxidans C54]
          Length = 639

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/625 (47%), Positives = 395/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARTGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRGRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VEDLMVEGDRVVGAVTQVGLKFRAKTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAISLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   IP FS+M    +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRSINYGILEEQPGDLDPIPVFSYMGSVAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I+
Sbjct: 305 THEVYPNGVSTSLPFDVQLALIHSLPGLENAHILRPGYAIEYDYFDPRGLKSTLETKAIA 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A  +   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGVNAALSALDREQWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRQLGIVDDARWDAFNRKRDAVAAEVERLKSS 484

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--------ICPDARKFSS 530
            +  +      +  +  K   +  +  + L  P+ S + L +        +         
Sbjct: 485 WVNPRVLPQEVAEPLLGKAIEREYSLADLLKRPNVSYEALMAARNTDGTLLAGPGVAADE 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQVKYAGYIARQQDEVQKQIAHEQQPIPADVDYDAVTSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA +I G+TPAA++LLLI++K+
Sbjct: 605 TIGQAGRISGVTPAAISLLLIHLKR 629


>gi|209696454|ref|YP_002264385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aliivibrio salmonicida LFI1238]
 gi|238058373|sp|B6EHU8|MNMG_ALISL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|208010408|emb|CAQ80754.1| glucose inhibited division protein [Aliivibrio salmonicida LFI1238]
          Length = 629

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/615 (46%), Positives = 388/615 (63%), Gaps = 5/615 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIVIGGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YQENFDVIVIGGGHAGTEAALAAARTGQKTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GLM    D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q NL + Q
Sbjct: 63  VDALGGLMAEAIDHSGIQFRTLNASKGPAVRATRAQADRALYKTYVRSVLENQPNLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +   V Q     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QAVDDLIIENDKVIGAVTQMGLKFRAKSVVLTAGTFLGGQIHIGMENFSGGRAGDPSSIT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L        F   RLKTGTP R+D +++ +   E Q  D     FSF+ ++  + Q + C
Sbjct: 183 LAQRLRDRPFRIDRLKTGTPPRIDARSVDFSNLEAQPGDNPTPVFSFLGNRQQHPQQVNC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I +N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL
Sbjct: 243 FITHTNEKTHDVIRKNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I
Sbjct: 303 TTHELYPNGISTSLPFDVQLQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKATYETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R ++Y+GV+IDDL++ G 
Sbjct: 363 EGLFFAGQINGTTGYEEAAAQGLMAGLNASLFSQGKEGWSPRRDEAYMGVLIDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT  G +LG + + R  RF + ++     R  LK 
Sbjct: 423 KEPYRMFTSRAEYRLSLREDNADLRLTEQGRELGLVDDIRWSRFNEKVENIEKERQRLKD 482

Query: 481 LVL--TSKNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI-ERL 536
           + +  TS+N+   +   K    +  +  + L  P+ +  +L +I             E++
Sbjct: 483 IWINPTSENIDQVNSILKTPIVREASGEDLLRRPEVTYSSLMTIEKFGPASDDQQASEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ YA Y  RQ  E ++    E   +P D +Y+ +  LSNE+  KLS  KP ++  AS
Sbjct: 543 EIQTKYAGYIQRQRDEIEKSLRHENTKLPFDLEYNKVKGLSNEVVAKLSDAKPESIGIAS 602

Query: 597 KIEGMTPAALNLLLI 611
           +I G+TPAA+++LL+
Sbjct: 603 RISGITPAAISILLV 617


>gi|241664777|ref|YP_002983137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia pickettii 12D]
 gi|240866804|gb|ACS64465.1| glucose inhibited division protein A [Ralstonia pickettii 12D]
          Length = 649

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/632 (45%), Positives = 386/632 (61%), Gaps = 15/632 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAIATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVQFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG++I +   E+Q  D   +P FSFM   ++  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRSINFSVLEEQPGDLDPVPVFSFMGRAEMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE   I+RPGYAIEYDY +P+ L  +LE+K ISG
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAYILRPGYAIEYDYFDPRALKASLESKAISG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ ++    D     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGQQVQGKDAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT +G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEVGRALGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----------CPDARKFS 529
           +    L    +  +  K   +     + L  P+ + + L  +            +    +
Sbjct: 486 VNPATLPLEDAEPVLGKGIEREYALADLLRRPNVTYETLMGMQGGKYALEAPLAEDPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDYS +  LS E+++KL+  KP
Sbjct: 546 EQIREQVEIGIKYHGYIARQADEVERLGANENTRLPADFDYSQVRGLSIEVQQKLAKHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             + QAS+I G+TPAA++LLL+++KK  ++  
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLRGQ 637


>gi|254851887|ref|ZP_05241235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-503]
 gi|254992367|ref|ZP_05274557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-064]
 gi|300763432|ref|ZP_07073430.1| glucose-inhibited division protein A [Listeria monocytogenes FSL
           N1-017]
 gi|258605182|gb|EEW17790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL R2-503]
 gi|300515709|gb|EFK42758.1| glucose-inhibited division protein A [Listeria monocytogenes FSL
           N1-017]
          Length = 629

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 375/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFGLRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|83746959|ref|ZP_00944005.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Ralstonia solanacearum UW551]
 gi|207744823|ref|YP_002261215.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum IPO1609]
 gi|83726379|gb|EAP73511.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Ralstonia solanacearum UW551]
 gi|206596233|emb|CAQ63160.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum IPO1609]
          Length = 647

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/630 (45%), Positives = 386/630 (61%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNEHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLVTRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRSLGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDA-----RKFS 529
           +    L    +  +  K   +  +  + L  P+ + ++L         P+A        +
Sbjct: 486 VNPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|125974849|ref|YP_001038759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium thermocellum ATCC 27405]
 gi|256003894|ref|ZP_05428881.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           2360]
 gi|281418696|ref|ZP_06249715.1| glucose inhibited division protein A [Clostridium thermocellum
           JW20]
 gi|166222929|sp|A3DHY7|MNMG_CLOTH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125715074|gb|ABN53566.1| glucose inhibited division protein A [Clostridium thermocellum ATCC
           27405]
 gi|255992232|gb|EEU02327.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           2360]
 gi|281407780|gb|EFB38039.1| glucose inhibited division protein A [Clostridium thermocellum
           JW20]
 gi|316941971|gb|ADU76005.1| glucose inhibited division protein A [Clostridium thermocellum DSM
           1313]
          Length = 630

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/624 (43%), Positives = 388/624 (62%), Gaps = 7/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAGCEAA  AA+LG  T +      +I +M CNP IGG  KGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGCEAALAAARLGVKTVVFAINLDSIANMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ AD   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLDV Q E+
Sbjct: 67  LGGEMGKNADKTFIQSKILNSAKGPAVYSLRAQVDRRSYQIEMKNTLEKQENLDVKQAEI 126

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                +    K  +  +     ++ +   V+L TGT+L+G I IG +    G  G  P+N
Sbjct: 127 VEILYDEVEGKKTVRGVKTHTGAIYKSKVVILATGTYLKGKIIIGDVSYSGGPDGLFPAN 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S  +   +  R KTGTPAR++ ++I + K E+Q  DER++PFSF  ++I   Q+ C
Sbjct: 187 KLSDSLREMGIELMRFKTGTPARVNRRSIDFSKMEEQPGDERIVPFSFENEEIKKEQVSC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN ETHRII EN+  S ++ G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP GL
Sbjct: 247 YLTYTNSETHRIIRENLHRSGLFGGLIEGIGPRYCPSIEDKVVRFSDKESHQVFVEPMGL 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y  G+ST+LPE++Q + +RTIPGLE V+I+R  YAIEYD INP +L  +LE + +
Sbjct: 307 NTQEMYLQGMSTSLPEDVQIEMLRTIPGLENVSIMRNAYAIEYDCINPTQLKLSLELRDV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGT+GYEEAAAQG++AGIN+ARK   L+ +   R+ +YIGV+IDD+ +KG 
Sbjct: 367 EGLFTAGQINGTSGYEEAAAQGIIAGINAARKIKGLEPLILDRSQAYIGVLIDDIVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLTPIG ++G I E R ++F +  +        +K 
Sbjct: 427 NEPYRMMTSRAEYRLLLRQDNADLRLTPIGYEVGLISEERYRKFEEKRRLIEQEIERVKK 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +      +  +        ++     + L  P+     L  I  +    S  V E++ 
Sbjct: 487 TNIAPTEKVNEFLKKHNSTPIKSGVKLADLLRRPELDYDTLAEIDENRPDLSFAVREQVS 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQM + ++ K  E+R + KD +Y  +  L  E ++KL+ +KP ++ QAS+
Sbjct: 547 ISIKYEGYIKRQMQQVEQFKKLEERKLDKDINYDEIKGLRLEARQKLNKIKPESVGQASR 606

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G++PA +++LL+Y+++   + +
Sbjct: 607 ISGVSPADISVLLVYLEQRKRQKS 630


>gi|297545651|ref|YP_003677953.1| glucose inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843426|gb|ADH61942.1| glucose inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 633

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 384/622 (61%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKSQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+
Sbjct: 67  LGGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQANMKYTLERQQNLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFESGPSGLFPANELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T 
Sbjct: 187 TLKRLGFKLMRFKTGTPARVDKRSIDFSKMEMQPGDEVITPFSYMHDKIEIEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  
Sbjct: 247 TNKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPPVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G + E R ++F K   +       L  +V+ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADLRLTELGYEIGLVTEERYEKFLKKKIQLEKEMKRLAGVVIK 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  +      T    Y  L  P+   ++   +           V E++ I  
Sbjct: 487 PSEEVNNFLISRGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKQRPDDILESVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +  K  E + IP++ DY  +P LSNE KEKL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYILKQLRQIEHFKALENKKIPENIDYYQIPGLSNEAKEKLTKIRPTSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLIY+++     ++
Sbjct: 607 VSPADISVLLIYMEQLRRNKSD 628


>gi|311109650|ref|YP_003982503.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Achromobacter xylosoxidans A8]
 gi|310764339|gb|ADP19788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Achromobacter xylosoxidans A8]
          Length = 639

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/625 (47%), Positives = 396/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARTGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRGRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  +VVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VEDLMVEGDRVVGAVTQIGLQFRAKSVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAVSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECG 241
               +     GRLKTGTP R+DG++I +   E+Q  D   IP FS+M +  +  RQ+ C 
Sbjct: 185 QRLKELKLPQGRLKTGTPPRIDGRSINYSILEEQPGDLNPIPVFSYMGNVGMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 THEVYPNGVSTSLPFDVQLALIHSLPGLENAHILRPGYAIEYDYFDPRGLKSTLETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A  +   +     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGVNAALFALDREQWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGIVDDARWDAFNRKRDAVAAEVERLKSS 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
            +  + L    +  +  K   +  +  + L  P  S + L +                  
Sbjct: 485 WVNPRLLPAEVAEPLLGKAIEREYSLADLLKRPSVSYEALMAARNADGSLLAGPGVVADE 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ +E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQVKYAGYIDRQQVEVQKQIAHEQQAIPADVDYDAVTSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TVGQAARISGVTPAAISLLLIHLKR 629


>gi|164686453|ref|ZP_02210481.1| hypothetical protein CLOBAR_00018 [Clostridium bartlettii DSM
           16795]
 gi|164604464|gb|EDQ97929.1| hypothetical protein CLOBAR_00018 [Clostridium bartlettii DSM
           16795]
          Length = 631

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/617 (43%), Positives = 379/617 (61%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A++G  T ++T    +IG M CNP+IGG GKG LV+EIDA
Sbjct: 8   NYDVIVVGAGHAGCEAALASARMGCKTLMVTLTLDSIGMMPCNPSIGGTGKGQLVKEIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ + ++ NL+++  EV
Sbjct: 68  LGGEMGVNTDKTFIQSRMLNTAKGPAVHSLRAQADKFKYHTEMKKTLENEPNLEIVMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +  +I  ++ +         VVL TG +L  +I+IG++ +  G  G   +  L +
Sbjct: 128 VDLINDGKVIKGVITRMGCKYHSKAVVLATGVYLNSLIYIGEVTLNEGPNGLGYAEKLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +    D  R KTGTPAR+   +I + +   Q  DE++ PFSFM+D +   Q+ C + R
Sbjct: 188 KLVDLGLDMRRFKTGTPARIHRDSIDFSQMVIQEGDEKITPFSFMSDDLKIDQVPCYLAR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TNL+TH++IM+NI  SA+Y G I S GPRYCPSIEDK+VRF ++  HQ F+EPEGL+T  
Sbjct: 248 TNLDTHKVIMDNINRSAMYGGKIHSTGPRYCPSIEDKVVRFNDKESHQTFIEPEGLDTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIST+LP E+Q Q  R++ GLE   I+RP YAIEYD +NP +L  +LE K    LF
Sbjct: 308 MYIQGISTSLPYEVQIQMYRSMKGLENCKIMRPAYAIEYDCLNPTQLKASLEIKVTENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ARK    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLMAGINAARKIQGKEPFILDRSEAYIGVLIDDLITKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G ++G   + R  RF             LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTEKGYEIGLASQERYDRFLTKKALVEAELERLKTERVT 487

Query: 485 SKNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESS 541
            K ++   +     +     + Y+FL  P+ + + L  I   A  +    V E+  I S 
Sbjct: 488 PKEVNELLVEKGASEIKVGLSLYDFLKRPEVTYELLEQIGKAASEEVPYDVKEQCVIMSK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + + +D DYS++  L  E ++KL+ +KP ++ QAS+I G+
Sbjct: 548 YEGYIDKQLKQIDQFKKLENKKLSEDIDYSTIEGLRIEARQKLNDIKPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLIY+++   
Sbjct: 608 SPADISVLLIYLEQMRR 624


>gi|330831716|ref|YP_004394668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Aeromonas veronii B565]
 gi|328806852|gb|AEB52051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Aeromonas veronii B565]
          Length = 636

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/622 (45%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLVRE
Sbjct: 10  YHEQFDVIVVGGGHAGTEAATAAARMGMNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVRE 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q
Sbjct: 70  VDALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQ 129

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +
Sbjct: 130 QACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIA 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +      RLKTGTP R+D +++ +   ++Q  D+    FSF+ +   + RQ+ C
Sbjct: 190 LAQRLRELPLRIDRLKTGTPPRIDARSVDFSVMQEQHGDDPRPVFSFIGNASQHPRQVPC 249

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 250 YVTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGL 309

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I
Sbjct: 310 TTHELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCI 369

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R  +Y+GVM+DDL++ G 
Sbjct: 370 PNLFFAGQINGTTGYEEAAAQGLMAGLNAALRAQDKDPWNPRRDQAYMGVMMDDLSTLGT 429

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S
Sbjct: 430 REPYRMFTSRAEYRLLLREDNADIRLTAIGRELGLVDDERWSKFNAKMEQVELERQRMRS 489

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +  ++ S  +++        + ++  E L  P+ +   L  I             E++
Sbjct: 490 TWIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMDIEGVGPSVTDPAAAEQV 549

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E ++    E  L+P D DY  +  LSNE+K KL+  KP  + QAS
Sbjct: 550 EIQIKYAGYIERQHDEVEKQLRNENTLLPLDLDYREVNGLSNEVKAKLNDAKPQTIGQAS 609

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK+ +
Sbjct: 610 RISGITPAAISILLVHLKKHGL 631


>gi|207722121|ref|YP_002252559.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum MolK2]
 gi|206587295|emb|CAQ17879.1| trna uridine 5-carboxymethylaminomethyl modification enzyme
           gida(glucose-inhibited division protein a) [Ralstonia
           solanacearum MolK2]
          Length = 647

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/630 (45%), Positives = 385/630 (61%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNEHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+       +     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLHVQGKEAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRSLGVVDDTRWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDA-----RKFS 529
           +    L    +  +  K   +  +  + L  P+ + ++L         P+A        +
Sbjct: 486 VNPAILPTADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|288942767|ref|YP_003445007.1| glucose inhibited division protein A [Allochromatium vinosum DSM
           180]
 gi|288898139|gb|ADC63975.1| glucose inhibited division protein A [Allochromatium vinosum DSM
           180]
          Length = 628

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/622 (46%), Positives = 402/622 (64%), Gaps = 5/622 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + +YDVIV+GGGHAG EAA  AA+ G  T L+T    T+G MSCNPAIGG+GKGHLVR
Sbjct: 2   LASDTYDVIVVGGGHAGTEAALAAARCGVRTLLLTQNIETLGQMSCNPAIGGIGKGHLVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL GLM R AD AGIQFR+LN  KGPAVR  R QADR+LYR A++  + +Q  L + 
Sbjct: 62  EIDALGGLMARAADRAGIQFRILNASKGPAVRATRAQADRQLYRAAVRTALENQPGLAIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   ++ +  Q     R   VVLT GTFL G IH+G      GR GD PSN
Sbjct: 122 QQSVEDLLVEGERVAGVRTQMGLEFRARAVVLTVGTFLGGRIHVGLSNYEGGRAGDPPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
            L     +  F   RLKTGTP R+D ++I + +  +Q  D+ +  FSF+     + RQ+ 
Sbjct: 182 GLARRLRELPFRIERLKTGTPPRIDARSIDYSRLAEQPGDDPVPVFSFLGRPEDHPRQVS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T+  TH II   +  S +++G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 242 CHITHTSERTHDIIRSGLSRSPLFTGVIEGVGPRYCPSIEDKIVRFADKSSHQIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  VYPNGIST+LP +IQ   +R+I GLE+ ++ RPGYAIEYD+++P++L P+LET+ 
Sbjct: 302 LTTHEVYPNGISTSLPYDIQEALVRSIVGLERAHLTRPGYAIEYDFLDPRDLKPSLETRP 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGLFLAGQINGTTGYEEA AQGL+AG N+A +    +     R +SY+GVM+DDL ++G
Sbjct: 362 LSGLFLAGQINGTTGYEEAGAQGLLAGANAALQVQGREPWHPRRDESYLGVMVDDLITRG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT IG +LG +G+ +   F    +     R  L+
Sbjct: 422 TNEPYRMFTSRAEYRLLLREDNADLRLTEIGRRLGLVGDEQWCAFEHKREAIERERQRLR 481

Query: 480 SLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
              +  + L    +T +  +   +   A + L+ P+     + ++  +  +  +  V E+
Sbjct: 482 DTWVRPETLDPTLATQVLGEPLRRESRALDLLARPNVGYAGIRALTGEPPEQVAPEVAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+I++ YA Y  RQ  E +  + +E + +P  FDY+ +  LS E++EKL  ++P  + QA
Sbjct: 542 LEIQTRYAGYIDRQRAEIERQREQELKPLPDSFDYAQVRGLSVEVREKLMRVRPATIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNT 617
           ++I G+TPAA++LLLI++K+  
Sbjct: 602 ARIPGVTPAAVSLLLIHLKRQA 623


>gi|163751411|ref|ZP_02158636.1| glucose-inhibited division protein A [Shewanella benthica KT99]
 gi|161328714|gb|EDP99862.1| glucose-inhibited division protein A [Shewanella benthica KT99]
          Length = 630

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/622 (45%), Positives = 382/622 (61%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G++T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FHERFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR  +Q+ + +Q NL + Q
Sbjct: 63  IDALGGAMAIATDFAGIQFRTLNSSKGPAVRATRAQADRALYRAKIQQILQNQPNLRLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V Q        TVVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QGVDDLIVENGRVIGVVTQMGLAFEAPTVVLTAGTFLSGKIHIGLQNYSGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L +   +     GRLKTGTP R+D  +I +D   +Q  D  L   SF+ D K   RQ+ C
Sbjct: 183 LADRLRELPLRIGRLKTGTPPRIDANSINFDLMTEQKGDTPLPVMSFVGDVKDHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YVTHTNERTHEIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKINRFADKTSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +YPNGIST+LP ++Q   +R+I G+E   IIRPGYAIEYDY +P++L  +LETK I
Sbjct: 303 NTNEIYPNGISTSLPFDVQLDLVRSIKGMENAQIIRPGYAIEYDYFDPRDLKKSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N++ +    +     R  +Y+GV++DDL++ G 
Sbjct: 363 GGLFFAGQINGTTGYEEAAAQGLLAGMNASLQVQGKESWAPRRDQAYLGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G + G + + R  +F+K  +        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTEKGREFGLVDDNRWSQFSKKRESIELELQRLRG 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +     ++ +      +  +  + L  P+     L  +             E++
Sbjct: 483 QWVHPNSPLLDVLNPQLNTPISREASFEDLLRRPEMDYPKLMKLEGFGPGLEDQRAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI+  Y+ Y  RQ  E  +    E   +P D DY  +P LSNE+  K++  KP  + QAS
Sbjct: 543 QIQIKYSGYIQRQQDEIDKALKHETTGLPLDLDYQEVPGLSNEVIAKMNEYKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I GMTPAA+++LL+++K+  +
Sbjct: 603 RISGMTPAAISILLVHLKRRGL 624


>gi|300857410|ref|YP_003782394.1| glucose inhibited division protein A [Clostridium ljungdahlii DSM
           13528]
 gi|300437525|gb|ADK17292.1| glucose inhibited division protein A [Clostridium ljungdahlii DSM
           13528]
          Length = 628

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/624 (42%), Positives = 385/624 (61%), Gaps = 4/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVIV+G GHAGCEA   AA++G  T + T    ++G M CNP +GG  KGHLVRE
Sbjct: 4   FSEKYDVIVVGAGHAGCEAGLAAARMGCKTLVCTMNLDSVGFMPCNPNVGGTAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ R+LN  KGPAV   R QAD++ Y + M+  +  Q NL + Q
Sbjct: 64  IDALGGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKNYSVRMKEVLEKQNNLSLRQ 123

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            EV    T+    +  ++ ++ +     TVVL TGT+L+G + IG +   +G  G  P+N
Sbjct: 124 IEVLSIRTDDKGKVCGVLTKNGAYFETKTVVLATGTYLKGKVIIGDVSYSSGPNGFMPAN 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S +    +  R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  +   QI C
Sbjct: 184 DLSQSLLDLGIELRRFKTGTPARVNKRSVDFSKMIEQPGDKKIVPFSFMSGSLDRSQISC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T   T ++I +NI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG 
Sbjct: 244 YLTYTTENTLKVIRDNINRSPLYNGSIKSVGPRYCPSIEDKVMRFPDKEKHQIFIEPEGE 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTD +Y +G ST++PE++Q    RTI GLE V  +R GYAIEYD INP +L  +LE KK+
Sbjct: 304 NTDELYVDGASTSMPEDVQIAMYRTIAGLENVEFLRTGYAIEYDCINPTQLKLSLEFKKV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NG++GYEEAA+QG++AGIN+A KS     +   R+D YIGV++DDL +KG 
Sbjct: 364 EGLFGAGQLNGSSGYEEAASQGIIAGINAALKSQGNPPLILKRSDGYIGVLVDDLVTKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLT +G K+G + E R  ++ K   +       +K 
Sbjct: 424 QEPYRMMTSRAEYRLILRQDNADLRLTELGHKIGLVSEERYGKYLKRKSDIEKEVERIKD 483

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +T K        SI   +  KT + YE +  P+     +  +  D  +    + E + 
Sbjct: 484 IHITPKKEVVDFLNSIGSSELKKTTSLYELIKRPELDYFKVQPLDVDRPELGEDIQEEVN 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I S Y  Y  +Q+ +  + K  E ++IP+D +Y  +  L  E  +KL  ++P ++ QAS+
Sbjct: 544 IISKYEGYIEKQLEQVSQFKKFENKIIPEDINYDKINGLRIEATQKLKKIRPMSVGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G++PA +++LLIY++K   + +
Sbjct: 604 ISGVSPADISVLLIYMEKKYREKD 627


>gi|289579529|ref|YP_003478156.1| glucose inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
 gi|289529242|gb|ADD03594.1| glucose inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
          Length = 633

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 383/622 (61%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKSQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+
Sbjct: 67  LGGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQANMKYTLERQQNLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFESGPSGLFPANELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T 
Sbjct: 187 TLKRLGFKLMRFKTGTPARVDKRSIDFSKMEMQPGDEVITPFSYMHDKIEIEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  
Sbjct: 247 TNKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVKVMRPAYAIEYDCIDPTQLKATLESKKIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPPVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G + E R ++F K   +       L  +V+ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADLRLTELGYEIGLVTEERYEKFLKKKIQLEKEMKRLAGVVIK 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  +      T    Y  L  P+   ++   +           V E++ I  
Sbjct: 487 PSEEVNNFLISRGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKQRPDDILESVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +  K  E + IP++ DY  +P LSNE KEKL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYILKQLRQIEHFKALENKKIPENIDYYQIPGLSNEAKEKLTKIRPTSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLIY+++      +
Sbjct: 607 VSPADISVLLIYMEQLRRNKGD 628


>gi|323705842|ref|ZP_08117414.1| glucose inhibited division protein A [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534838|gb|EGB24617.1| glucose inhibited division protein A [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 623

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/616 (43%), Positives = 380/616 (61%), Gaps = 4/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV VIG GHAGCEAA   A+LG  T        +I  M CNP+IGG  K +LVREIDAL
Sbjct: 8   YDVAVIGLGHAGCEAALATARLGLKTVAFAINLDSIALMPCNPSIGGPAKTNLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D   IQ R LN  KGPAVR  R Q+D++ Y+  M+  +  QENLD+ Q EV 
Sbjct: 68  GGQMAINTDLTLIQQRTLNTSKGPAVRALRAQSDKKRYQFNMKYTLEKQENLDIKQAEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   + S++ +  +   C + ++TTGT+LRG I IG +    G  G  P+N L  S
Sbjct: 128 DIEVEDGQVKSVITKTGARYLCRSCIVTTGTYLRGRIIIGDVSYSGGPNGLFPANELSKS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
           F + +    R KTGTPAR+D K+I +D  E Q  D+++ PFS+M D+I   QI C +T T
Sbjct: 188 FERLNIRLMRFKTGTPARVDKKSINFDAMEIQPGDDKVTPFSYMHDEINVEQIPCWLTYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N +TH +IM+NI  S +YSG+IK  GPRYCPSIEDK+V+F ++  HQ+F+EPEG +T+ +
Sbjct: 248 NTKTHEVIMKNIDRSPLYSGEIKGVGPRYCPSIEDKVVKFPDKLRHQLFIEPEGRDTNEM 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S+++PE++Q +F+RTI GLE V ++RPGYAIEYD I+P +L  +LE K ISGLF 
Sbjct: 308 YVQGMSSSMPEDVQIEFLRTIKGLENVKVMRPGYAIEYDCIDPTQLKQSLELKTISGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +KG  EPYR
Sbjct: 368 AGQVNGTSGYEEAAAQGLMAGINAAMKHYGREPFILDRSEAYIGVLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLT  G ++G + + R  RF     +Y      LK+ ++  
Sbjct: 428 MLTSRAEYRLILRQDNADFRLTEKGRQIGLVDDERYNRFLMKKDQYEKEMERLKNTMIVP 487

Query: 486 KNLSSTSISFKQDGKT---RTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESS 541
            +  +  +  K         T Y+ L  P+    +   I  D        V  ++ I   
Sbjct: 488 SHDVNEYLKSKGSSPIVTGMTMYDLLKRPEIDYVSSKVIDSDRPDDIRDDVAFQIDINIK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM + ++ K  E + IP   +Y  +  +S E ++KL  + P ++ QAS+I G+
Sbjct: 548 YEGYIRKQMEQVEKFKALENKKIPSWINYDDIKGISIEARQKLKSIMPTSVGQASRISGV 607

Query: 602 TPAALNLLLIYIKKNT 617
           +PA ++++LIY++   
Sbjct: 608 SPADISVILIYLQSRR 623


>gi|47095617|ref|ZP_00233225.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           1/2a F6854]
 gi|254830754|ref|ZP_05235409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes 10403S]
 gi|254899732|ref|ZP_05259656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes J0161]
 gi|254913065|ref|ZP_05263077.1| glucose-inhibited division protein A [Listeria monocytogenes J2818]
 gi|254937446|ref|ZP_05269143.1| glucose-inhibited division protein A [Listeria monocytogenes F6900]
 gi|47016047|gb|EAL06972.1| glucose-inhibited division protein A [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610048|gb|EEW22656.1| glucose-inhibited division protein A [Listeria monocytogenes F6900]
 gi|293591066|gb|EFF99400.1| glucose-inhibited division protein A [Listeria monocytogenes J2818]
          Length = 629

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 376/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAETVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|323703264|ref|ZP_08114915.1| glucose inhibited division protein A [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531729|gb|EGB21617.1| glucose inhibited division protein A [Desulfotomaculum nigrificans
           DSM 574]
          Length = 629

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/619 (42%), Positives = 379/619 (61%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEA   AA++G  T ++T     +  M CNPA+GG  K HLV+EIDA
Sbjct: 7   DYDVIVVGAGHAGCEAGLAAARMGCKTLVLTLNLDNVALMPCNPAVGGPAKSHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y+  M++ + SQ NLD+ Q  V
Sbjct: 67  LGGQMGINTDLTAIQMRMLNTGKGPAVHALRAQADKLRYQQLMKKTLESQPNLDLKQLLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +     +      V+LTTGT+L+G I IG +  P G      + +L  
Sbjct: 127 EEILVQNGQVRGVATNIGAEFSARAVILTTGTYLKGRIIIGSVYYPGGPNSQHAAMNLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +      + GR KTGTPAR+D +T+ + K   Q  DER+  FSF+       Q+ C +T 
Sbjct: 187 NLRSLGLELGRFKTGTPARIDRRTVDFSKMTIQPGDERVHNFSFLNPVKHRDQVPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL+T  
Sbjct: 247 TTERTHQIIRDNLHRSPLYSGIIEGVGPRYCPSIEDKIVRFADKPKHQIFIEPEGLSTFE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q + +R+IPGLE+V I+RPGYAIEYDY+ P +L  TLE K I GL+
Sbjct: 307 MYVQGMSTSLPPDVQLEMLRSIPGLEQVEIMRPGYAIEYDYVVPTQLKSTLECKNIDGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A K  + +    SR ++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGIMAGINAALKIKEKEPFTLSRAEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ T+RAEYR+ LR DNAD+RLT  G  +G + E R +++ +           L+S V+ 
Sbjct: 427 RLMTARAEYRLLLRQDNADHRLTQKGYDIGLVTEERYRKYVEKWSAIKNEIDRLQSQVIP 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +    +     +   +  +   A   +  P+  +++L  +  D  + +  V+E ++IE  
Sbjct: 487 ASEEVNNLLKDLGSSEINQPVPAVNLIRRPEIHLRDLIKLNIDMPQLNDEVLEEVEIEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  E R + KD DY ++  LS E ++KL   KP ++ QAS+I G+
Sbjct: 547 YEGYIKKQLAQVERFEKLESRKLSKDIDYLNIKGLSVEARQKLDKFKPDSIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LL+++++   K 
Sbjct: 607 SPADISVLLVWLEQERRKA 625


>gi|299820855|ref|ZP_07052744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria grayi DSM 20601]
 gi|299817876|gb|EFI85111.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria grayi DSM 20601]
          Length = 641

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/619 (42%), Positives = 378/619 (61%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  NYDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 79  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +     TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 139 EELIIEDGRCVGVITNSGAKYHAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   +I + KTE+Q  DE+   FS+ T  +   Q+ C +T 
Sbjct: 199 HLEELGFELRRFKTGTPPRVKSSSIDYTKTEEQPGDEQPQAFSYETVDMLVDQLPCWLTY 258

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 259 TNEQTHEIINANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGRNTEE 318

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD + P +L+PTLETKK+  L+
Sbjct: 319 VYVQGLSTSLPEDVQREMLQTIPGLENVEMMRVGYAIEYDAVMPDQLWPTLETKKVENLY 378

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK+   + +   R ++YIGV+IDDL +KG  EPY
Sbjct: 379 TAGQINGTSGYEEAAGQGLMAGINAARKAMDKEPVILGRNEAYIGVLIDDLVTKGTEEPY 438

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R   F +         + LK + + 
Sbjct: 439 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYAAFKEKQALIADEITRLKKVRIK 498

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L+    +  +DG    A +FL  P+ +   +  I P     S  + E+++I+
Sbjct: 499 PTKEVQILLTEMGANELKDGV--LAADFLRRPEITYPIIEQIVPRETSLSDEIKEQVEIQ 556

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +  ++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 557 IKYEGYIEKASAQVDKMKRMEDKKIPENIDYDAIGGLATEALEKLKKIEPLSIAQASRIS 616

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 617 GVNPADISILLVYIEQGKI 635


>gi|46908999|ref|YP_015388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460831|sp|Q71VV1|MNMG_LISMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46882272|gb|AAT05565.1| glucose-inhibited division protein A [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 632

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 375/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK    + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFAKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|323527852|ref|YP_004230005.1| glucose inhibited division protein A [Burkholderia sp. CCGE1001]
 gi|323384854|gb|ADX56945.1| glucose inhibited division protein A [Burkholderia sp. CCGE1001]
          Length = 652

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/631 (45%), Positives = 389/631 (61%), Gaps = 15/631 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTEFDVIVVGGGHAGTEAALAAARMGNKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITN-RQI 238
           SL     +     GRLKTGTP R+DG+TI + + E+Q  D   +P FSF+     + RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFLGRAEQHPRQM 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDPRGLKASLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQINGTTGYEEAAAQGL+AGIN+     + +  C  R  +Y+GV++DDL ++
Sbjct: 362 VISGLFFAGQINGTTGYEEAAAQGLLAGINAGLFVQEKEAWCPRRDQAYLGVLVDDLVTR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG +G+ R   F++     +     L
Sbjct: 422 GVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVGDVRWDAFSRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI------CPDARKFS 529
           ++  +  K L    +T++  K      +  + L  P  S   + ++       P+     
Sbjct: 482 RTTWVNPKTLSAEEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRGGACGAPEILAED 541

Query: 530 S----LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E +  +  E   +P   DY+ +  LS E ++KL+
Sbjct: 542 EVLLAQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPDGLDYAEVRGLSFEARQKLT 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +P  + QAS+I G+TPAA++LL++++K+ 
Sbjct: 602 QYRPETIGQASRISGITPAAISLLMVHLKRG 632


>gi|206890699|ref|YP_002248428.1| glucose-inhibited division protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|254811520|sp|B5YJL3|MNMG_THEYD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|206742637|gb|ACI21694.1| glucose-inhibited division protein A [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 624

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/622 (47%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + +D+IV+G GHAGCEAA   AK+G  TAL T    TI  +SCNPAIGGL KGHLVREI
Sbjct: 4   EKDFDIIVVGAGHAGCEAALATAKMGLQTALFTIYLETIAQLSCNPAIGGLAKGHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M +V D AGIQFR+LN  KGPAV   R QADR LY + M++ + S ENL + Q 
Sbjct: 64  DALGGIMAKVTDMAGIQFRMLNRSKGPAVWSLRAQADRILYNIYMRKILESTENLAIKQA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  I+           V++T GTFL G+IHIG     AGR G+ PS  L
Sbjct: 124 MVEEIVVENGKVKGIITSLGVFYGAKAVIITPGTFLNGLIHIGLDSFEAGRAGEFPSKKL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  K     GRLKTGTP R+D KTI + KTE+Q  D+  IPFS+ T KI N Q+ C I
Sbjct: 184 SESIKKLGLKMGRLKTGTPPRIDAKTIDFSKTEEQGGDDPPIPFSYSTKKINNPQVPCYI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II+ N+  S +YSG IK  GPRYCPSIEDK+V+F +++ HQIFLEPEGL+ 
Sbjct: 244 TYTNEKTHEIILNNLDRSPLYSGKIKGIGPRYCPSIEDKVVKFRDKSRHQIFLEPEGLSR 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NGI T+LP ++Q  F+RTIPGLE   I+RPGYAIEYD++ P ++  TLE K I G
Sbjct: 304 KEYYANGIPTSLPYDVQVAFVRTIPGLEDAEIMRPGYAIEYDFVYPTQIRHTLEVKGIEG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL+AGIN+A K  K   +   R ++YIGV+IDDL +KG  E
Sbjct: 364 LYLAGQINGTSGYEEAAAQGLMAGINAALKIKKQPPLILGRDEAYIGVLIDDLVTKGTQE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL   G K+G + E   + F K  +        LK+  
Sbjct: 424 PYRMFTSRAEFRLLLRHDNADLRLRDYGYKIGLVDEETYEEFNKKKELLQREIKRLKTTT 483

Query: 483 LTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +      + ++   Q      A    + L  P+ +   +    P     +  + E ++I 
Sbjct: 484 IKPSEELNKALIEAQTTPVEEATFLDKLLKRPELNYDFIKKFAPSEVTLTKELEELVEIH 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +QM   + +K  E++LIP++FD++ +P LS E+ +KL+ + P  + QA +I 
Sbjct: 544 IKYEGYIAKQMELVERMKQFEEKLIPENFDFN-IPGLSREVIQKLTEVAPRTIGQAMRIP 602

Query: 600 GMTPAALNLLLIYI-KKNTVKL 620
           G+TPAA+++L++ + KK TVK 
Sbjct: 603 GVTPAAISILMVAVQKKTTVKK 624


>gi|300702502|ref|YP_003744102.1| glucose-inhibited division protein a, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CFBP2957]
 gi|299070163|emb|CBJ41454.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CFBP2957]
          Length = 647

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/630 (45%), Positives = 386/630 (61%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVESDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I+G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAITG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRGLGVVDDTRWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDA-----RKFS 529
           +    L    +  +  K   +  +  + L  P+ + ++L         P+A        +
Sbjct: 486 VNPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPEAPLDDEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGASENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|221135171|ref|ZP_03561474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Glaciecola sp. HTCC2999]
          Length = 629

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/622 (47%), Positives = 390/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YEESYDVIVVGGGHAGTEAALAAARMGVKTLLLTHNMETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR A+++ +  Q+NL + Q
Sbjct: 63  IDALGGTMAHAIDHAGIQFRTLNSSKGPAVRATRAQADRNLYRNAVRKSLEHQQNLTIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E N ++ +V Q     +  TVV+T GTFL G IHIG      GR GD PS +
Sbjct: 123 QSCDDIIVENNRVTGVVTQMGLKFKAKTVVITVGTFLGGTIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L        F   RLKTGTPARLD +T+ ++  + Q  D  L  FSFM   +   RQI C
Sbjct: 183 LAQRLRALPFRVDRLKTGTPARLDARTLNYEVMQAQPGDTPLPVFSFMGKVEQHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 YITHTNERTHEIIRGGLDRSPMYTGVIEGIGPRYCPSIEDKINRFADKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LP ++Q   +R+I G E  +IIRPGYAIEYD+ +P++L  +LETK I
Sbjct: 303 DSIEIYPNGISTSLPFDVQFDLVRSIKGFENAHIIRPGYAIEYDFFDPRDLKQSLETKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N+A ++     I   R  +YIGV+IDDL + G 
Sbjct: 363 EGLFFAGQINGTTGYEEAGAQGLIAGANAALQTQDKAPISLRRDQAYIGVLIDDLATMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   F + +      +  LK+
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADMRLTPLGREVGLVDDARWAAFNEKLDLIEQEKQRLKA 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
             +  ++    +   +      +  T  E +  P+ + + L  I             E++
Sbjct: 483 HYVHPEHSATPALNPLLKNPVSREHTFEELIRRPEMTYKKLMEIEGIGPGLEHVQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E  + +  E+ L+P  FDYS +  LSNE+  KL+  +P  + +AS
Sbjct: 543 EIQIKYAGYIERQKEEIAKTQRHEETLLPPTFDYSQISGLSNEVVAKLTESRPETIGKAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHNM 624


>gi|304405895|ref|ZP_07387553.1| glucose inhibited division protein A [Paenibacillus curdlanolyticus
           YK9]
 gi|304345138|gb|EFM10974.1| glucose inhibited division protein A [Paenibacillus curdlanolyticus
           YK9]
          Length = 632

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/617 (43%), Positives = 376/617 (60%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KGH+VREIDA
Sbjct: 7   SYDVIVVGAGHAGSEAALAAARMGCETLLLTINLDMVAFMPCNPSIGGPAKGHVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M++ I   ++L + QG V
Sbjct: 67  LGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFDYQHMMKKTIEETDHLTLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ +  +  R   VV+TTGT++RG + +G+L   +G     PS  L  
Sbjct: 127 DELIVEDGHCVGVITKTGAEYRAKAVVITTGTYMRGKVIMGELMYESGPNNQQPSIKLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R KTGTP R+ G TI + KTE Q  DE+   FS+ T+   N Q+ C +T 
Sbjct: 187 CLKDLGFQLARFKTGTPPRVHGDTIDFSKTEIQPGDEKPKFFSYETESSNNEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  TH+II +N+  + ++SG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG NT  
Sbjct: 247 TSETTHQIINDNLHRAPMFSGAIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKNTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST++PE++Q   +R+IPGLE V ++R GYAIEYD + P +L+P+LETK I GLF
Sbjct: 307 YYVQGLSTSMPEDVQLGILRSIPGLENVEMMRTGYAIEYDAVVPTQLWPSLETKLIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEA  QG+VAGIN+ARK+   + +   R+  YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAGGQGIVAGINAARKAQGKEPVIIERSQGYIGVMIDDLVTKGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           R+ TSRAEYR+ LR DNAD RLTP+G ++G I + R  R+    +        LK+  + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTPLGYEIGLITQERYDRYLNKKELVEQEIERLKTTKIR 486

Query: 484 --TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              S       I         +A   L  P+ +  ++  + P   + +  + E+ +I+  
Sbjct: 487 MEESVQALLAEIGSAPLTGGCSALSLLLRPEVTYAHIEKLVPAPYELTEEMKEQAEIQVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  +Q+ + + +   EK+ IP D DY  +  L+NE K  LS ++P ++ QAS+I G+
Sbjct: 547 YSGYIEKQLHQVERMGKMEKKRIPDDIDYFDVHGLANEAKTNLSQIRPLSIGQASRIAGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           TPA +++LL+Y++    
Sbjct: 607 TPADISILLVYLEHYNR 623


>gi|82411948|gb|ABB76057.1| glucose inhibited division protein A [Nitrosospira multiformis ATCC
           25196]
          Length = 647

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 400/621 (64%), Gaps = 5/621 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 22  FDVIVIGGGHAGTEAALAAARIGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   AD AGIQFR+LN +KGPAVR  R QADR LYR A+++ + SQ NL + Q  V 
Sbjct: 82  GGVMAEAADEAGIQFRILNSRKGPAVRATRAQADRVLYRQAIRQRLESQPNLWLFQQGVD 141

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         V+LT GTFL G+ H+G     AGR GD PSNSL   
Sbjct: 142 DLVLEGERVAGVVTQLGIRFNARAVILTAGTFLAGLAHVGSANFQAGRAGDLPSNSLAGR 201

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSFM +  ++  Q+ C IT 
Sbjct: 202 LRELKLPVGRLKTGTPPRIDGRTIDYSAVAAQPGDAPVPVFSFMGNAASHPKQVSCWITH 261

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S ++SG I+  GPRYCPSIEDK+VRF  +  HQIFLEPEGL T  
Sbjct: 262 TNSQTHDIIRSGLDRSPLFSGAIEGIGPRYCPSIEDKVVRFSAKESHQIFLEPEGLTTHE 321

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LET+ I GLF
Sbjct: 322 VYPNGISTSLPFDMQVKLVRSIKGLENAHITRPGYAIEYDYFDPRALKSSLETRMIEGLF 381

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A K+   +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 382 FAGQINGTTGYEEAAAQGLLAGINAALKTQDREPWCPRRDEAYLGVLVDDLITRGVTEPY 441

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R   F   ++     ++ LK+  L+
Sbjct: 442 RMFTSRAEYRLQLREDNADLRLTEVGRRLGVVNDARWVAFNIKLEAIAQEQNRLKTTWLS 501

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIES 540
            K+LS T    +  K      + ++ L  P+ S   L ++             E+++I++
Sbjct: 502 PKSLSETDALRVIGKNIEHECSLHDLLRRPNVSYAELMTLPGAGEPVVDLAAAEQVEIQA 561

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E     + E   +P+D DY ++  LSNE+++KL+  KP    QAS+I G
Sbjct: 562 KYQGYIERQKDEVARNAYYEDIRLPQDLDYKTVRGLSNEVQQKLNQFKPETAGQASRISG 621

Query: 601 MTPAALNLLLIYIKKNTVKLN 621
           +TPAA++LLL+++K+     N
Sbjct: 622 ITPAAISLLLVHVKRGFSSAN 642


>gi|149375653|ref|ZP_01893422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter algicola DG893]
 gi|149360055|gb|EDM48510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinobacter algicola DG893]
          Length = 628

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/617 (46%), Positives = 401/617 (64%), Gaps = 5/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G+ T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARMGSQTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A++  + +Q NL + Q    
Sbjct: 67  GGAMAMATDKAGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLTLFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I+ +V Q     R  TVVLTTGTFL GVIHIG  +   GR GD+P+N+L   
Sbjct: 127 DLIVDGERITGVVTQSGIRFRAPTVVLTTGTFLGGVIHIGMQQHSGGRAGDAPANALAQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F+ GRLKTGTP R+D +++ +   ++Q+ D+     SF+  +  +  Q+ C +TR
Sbjct: 187 LRELPFNVGRLKTGTPPRIDARSVDFSVMQEQWGDDPAPVMSFLGSRNQHPEQVCCYVTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II      S +++G+I+  GPRYCPSIEDK+ RF +++ HQIF+EPEGL T+ 
Sbjct: 247 TTEQTHDIIRSGFDRSPMFAGNIEGIGPRYCPSIEDKVNRFADKDSHQIFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ   +RTIPG E  +I RPGYAIEYD++NP++L  TLETK I GL+
Sbjct: 307 LYPNGISTSLPFDIQLAAVRTIPGFENAHITRPGYAIEYDFLNPQDLRHTLETKFIQGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN+A ++   D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINAALRAQDKDEWYPRRDEAYLGVLVDDLITMGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G KLG + ++R + F    +     R  L++  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTETGHKLGLVDDQRWQAFNSKREAIGAERQRLETTRIH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                  ++ S   +   + +T  E L  P+ + +++  +          V ++++IE  
Sbjct: 487 PGTSGGDAANSHLRQPMNRDQTLAELLRRPEINYRHIADMAEGHAD-DPAVADQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E + ++  E   +P D D+ ++  LSNE+K+KL  ++P  + QAS+I+G+
Sbjct: 546 YEGYISRQADEIERLRRNENTRLPDDIDFDAIGGLSNEIKQKLKEVRPETVAQASRIQGV 605

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++ +L+++KK  +
Sbjct: 606 TPAAISQVLVHLKKRDL 622


>gi|222150245|ref|YP_002551202.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium vitis S4]
 gi|254811504|sp|B9JV52|MNMG_AGRVS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|221737227|gb|ACM38190.1| glucose inhibited division protein A [Agrobacterium vitis S4]
          Length = 621

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/618 (59%), Positives = 467/618 (75%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R +DVIVIGGGHAG EAA  +A+LGA T L+TH+  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MPRRFDVIVIGGGHAGSEAAYASARLGARTCLVTHRRDTIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMGR ADAAGIQFR+LN KKGPAVRGPRTQADR+LYR A+Q  + +   L++I+
Sbjct: 61  IDALGGLMGRCADAAGIQFRLLNRKKGPAVRGPRTQADRKLYRQAVQNVLFNHPQLEIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+V   N E   +  +++ D   +  ++V+LT+GTFLRG+IHIG+ KIPAGR+G++PS  
Sbjct: 121 GDVFDLNVENGTVKGVILADGQSLPSASVILTSGTFLRGLIHIGQTKIPAGRVGEAPSLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +     GRLKTGTPARLDG+TI W + E Q ADE+ +PFSFMTD+ITNRQIECG
Sbjct: 181 LSATLGRLGLRLGRLKTGTPARLDGRTIDWAQLEMQAADEQPVPFSFMTDRITNRQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH II +NI  SA+YSG I+  GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+
Sbjct: 241 ITRTTAATHTIIRDNIHLSAMYSGQIEGVGPRYCPSIEDKISRFGDRDGHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE +Q +F+RT+PGLE V I++  YAIEYD+I+P+EL  +LE K++S
Sbjct: 301 DHTVYPNGISTSLPESVQKEFMRTLPGLENVTILQSAYAIEYDHIDPRELSASLELKRLS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGLVAG+N+AR +   D + FSR  SYIGVMIDDL S GV 
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLVAGLNAARTAGGQDVVHFSRAQSYIGVMIDDLISHGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTPIG+ LGCI   ++KRF  Y  + +   ++L++ 
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADMRLTPIGIALGCIASDQEKRFKDYRHQIDDTINMLETR 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT    ++  I   QDG+ RTA E L+YPD SI +L  + P+     S V E ++I ++
Sbjct: 481 KLTPNEAAAVGIPVNQDGRRRTALELLAYPDISIADLSRLWPELDALDSKVAEAVEIHAT 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +    K +E RLIPKDFDY+SL  LSNELK+KL   +P NL QA+K+EGM
Sbjct: 541 YAVYMDRQNADIAATKRDEDRLIPKDFDYASLSGLSNELKQKLEKTRPENLSQAAKVEGM 600

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAA++LL+ ++ K  ++
Sbjct: 601 TPAAISLLIAFLNKGMLR 618


>gi|255521613|ref|ZP_05388850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-175]
          Length = 629

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/619 (42%), Positives = 375/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          +  L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  + E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QA +I 
Sbjct: 546 IKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQARRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076852|gb|ADJ66251.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae
           SmR1]
          Length = 642

 Score =  787 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/633 (45%), Positives = 395/633 (62%), Gaps = 16/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPTQFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q         VVLT GTFL G IH+G      GR GD P+ 
Sbjct: 122 QQAVDDLMLEGDRVVGAVTQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQI 238
           SL     +     GRLKTGTP R+DG++I     E+Q  D   +P FS M +  +  RQ+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSINLAILEEQPGDLDPVPVFSVMGNAAMHPRQM 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQI+LEPE
Sbjct: 242 PCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T   YPNGIST+LP ++Q + +R++ G+E  +I+RPGYAIEYDY +P+ L  +LET+
Sbjct: 302 GLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLETR 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           ++ GLF AGQINGTTGYEEAAAQG++AGIN+A ++   +     R ++Y+GV++DDL ++
Sbjct: 362 QVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVTQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR+SLR DNAD RLT IG +LGC+G+ + + F +  +  +     L
Sbjct: 422 GVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMERL 481

Query: 479 KSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI---------CPDAR 526
           KS  +  + L++     +  K   +     + L  P+ S  +L  +          P   
Sbjct: 482 KSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGTEGQALAGPGIE 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                V E+++I+  YA Y  RQ  E       E   +P D DY  + ALS E+++KL+ 
Sbjct: 542 DGP--VREQVEIQVKYAGYIARQADEISRQDHNENLKLPADLDYMDVKALSIEVRQKLNK 599

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            +P  L QAS+I G+TPAAL+LLL+++KK  +K
Sbjct: 600 HRPETLGQASRISGVTPAALSLLLVHLKKGGLK 632


>gi|161594059|ref|NP_900331.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chromobacterium violaceum ATCC 12472]
 gi|205831545|sp|Q7P0A6|MNMG_CHRVO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 632

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/620 (44%), Positives = 385/620 (62%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   SFDVIVVGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDIGGIQFRTLNASKGPAVRATRAQADRILYKAAIREMLENQPNLTLFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   +       R  TVVLT GTFL G IH+G      GR GD  +++L  
Sbjct: 126 DDLLIEGDRVVGAITAIGITFRAKTVVLTAGTFLSGKIHVGLENYTGGRAGDQAASTLGE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
              + +   GRLKTGTP R+DG+++ +   E+Q  D     FS+   + +  +Q+ C IT
Sbjct: 186 RLRELNLPVGRLKTGTPPRIDGRSVDFSVMEEQPGDTPEPVFSYRGKRAMHPKQLPCWIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T 
Sbjct: 246 HTNERTHDIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             YPNGIST+LP +IQ   +R+I G+E  +I+RPGYAIEYDY +P+ L  +LETK I GL
Sbjct: 306 EFYPNGISTSLPFDIQLAAVRSIRGMENAHILRPGYAIEYDYFDPRGLKASLETKAIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+   + + +  C  R ++Y+GV++DDL +KGV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGLFAREQEAWCPRRDEAYLGVLVDDLITKGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT +G KLG +G+ +   F +        ++ L++  L
Sbjct: 426 YRMFTSRAEFRLQLREDNADLRLTEMGRKLGVVGDEQWDAFCRKRDAVEAEKARLQATWL 485

Query: 484 TSKNLSS----TSISFKQDGKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERL 536
               L+       +  K   +  T  + L  P+   + L         A + +  V E++
Sbjct: 486 HPSKLADPAALARVLGKPIEREYTLQDLLKRPNVPYRELMTVPEAADGAPELADEVAEQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E       E   +P D DY  +  LS E+++KL+  +P  L QAS
Sbjct: 546 EIQVKYQGYINRQNEELARRDNLEDIRLPGDIDYGLVKGLSKEVQQKLNQQRPETLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I+G+TPAA+ LL++++++ 
Sbjct: 606 RIQGITPAAVALLMVHLRRG 625


>gi|257455888|ref|ZP_05621107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enhydrobacter aerosaccus SK60]
 gi|257446736|gb|EEV21760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enhydrobacter aerosaccus SK60]
          Length = 628

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/625 (48%), Positives = 391/625 (62%), Gaps = 7/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 5   KIYDVIVIGGGHAGTEAALAAARMGQQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRYTLENQPNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E     ++V Q      C  VVLT+GTFL G IHIG      GR GD PS  L 
Sbjct: 125 ADDILVENGKAVAVVTQSGIEFACGAVVLTSGTFLGGTIHIGLENHKGGRAGDPPSIRLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D  L   S++ D  +  RQI C I
Sbjct: 185 DRLRELKLPVGRLKTGTPPRIDARTVDFSVMTVQPGDTPLPVMSYLGDVSMHPRQINCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 245 THTNERTHDIIRSGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L P+LETK I  
Sbjct: 305 HELYPNGISTSLPFDIQLALVRSMKGLENAHILRPGYAIEYDYFDPQNLKPSLETKSIDN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG++AG+N+AR++  LD     R  +YIGV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGILAGLNAARRTQGLDAWTPRRDQAYIGVLVDDLITHGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG  LG + + R + ++  +       + L+SL 
Sbjct: 425 PYRMFTSRAEYRLLLREDNADQRLTEIGRDLGLVDDARWQVYSDKMTAIEQETARLRSLW 484

Query: 483 LTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            T  N    S   K      K   A + L  P+ S  ++  +       S+ V E+++I 
Sbjct: 485 ATPTNTLGQSFINKTGEVLTKENNALDLLKRPNVSFDDISELTESP--VSAEVGEQIEIG 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ +E  ++K  E  LIP DF Y  +  LSNE+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYAGYIDRQQVEIGQMKKLEHTLIPDDFTYHDISGLSNEIVQKLEKVRPTTLAQASRIS 602

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIV 624
           G+TPAA+ LL + IKK+  K  E++
Sbjct: 603 GVTPAAVQLLAMMIKKSK-KAREVL 626


>gi|162139859|ref|YP_413449.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosospira multiformis ATCC 25196]
 gi|205375715|sp|Q2Y5B4|MNMG_NITMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 632

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/621 (47%), Positives = 400/621 (64%), Gaps = 5/621 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARIGQKTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   AD AGIQFR+LN +KGPAVR  R QADR LYR A+++ + SQ NL + Q  V 
Sbjct: 67  GGVMAEAADEAGIQFRILNSRKGPAVRATRAQADRVLYRQAIRQRLESQPNLWLFQQGVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +V Q         V+LT GTFL G+ H+G     AGR GD PSNSL   
Sbjct: 127 DLVLEGERVAGVVTQLGIRFNARAVILTAGTFLAGLAHVGSANFQAGRAGDLPSNSLAGR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP R+DG+TI +     Q  D  +  FSFM +  ++  Q+ C IT 
Sbjct: 187 LRELKLPVGRLKTGTPPRIDGRTIDYSAVAAQPGDAPVPVFSFMGNAASHPKQVSCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S ++SG I+  GPRYCPSIEDK+VRF  +  HQIFLEPEGL T  
Sbjct: 247 TNSQTHDIIRSGLDRSPLFSGAIEGIGPRYCPSIEDKVVRFSAKESHQIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP ++Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LET+ I GLF
Sbjct: 307 VYPNGISTSLPFDMQVKLVRSIKGLENAHITRPGYAIEYDYFDPRALKSSLETRMIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A K+   +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAALKTQDREPWCPRRDEAYLGVLVDDLITRGVTEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT +G +LG + + R   F   ++     ++ LK+  L+
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEVGRRLGVVNDARWVAFNIKLEAIAQEQNRLKTTWLS 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIES 540
            K+LS T    +  K      + ++ L  P+ S   L ++             E+++I++
Sbjct: 487 PKSLSETDALRVIGKNIEHECSLHDLLRRPNVSYAELMTLPGAGEPVVDLAAAEQVEIQA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E     + E   +P+D DY ++  LSNE+++KL+  KP    QAS+I G
Sbjct: 547 KYQGYIERQKDEVARNAYYEDIRLPQDLDYKTVRGLSNEVQQKLNQFKPETAGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLN 621
           +TPAA++LLL+++K+     N
Sbjct: 607 ITPAAISLLLVHVKRGFSSAN 627


>gi|289436061|ref|YP_003465933.1| glucose inhibited division protein A [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289172305|emb|CBH28851.1| glucose inhibited division protein A [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 629

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/619 (43%), Positives = 377/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIENGVCKGVITNSGAIYYAETVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  DE    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDEHARAFSFDTVEMIMDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGRNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+ARK  K + +   R  +YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAARKVFKKEPVILGRDQAYIGVLIDDLVTKGTEEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I + R +RF          ++ L+   + 
Sbjct: 428 RLLTSRAEYRLLLRHDNADLRLTEIGYEIGLISDERYERFLAKQSAIEAEKTRLQKTRIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   L        +DG    A + L  P+ +   +  I       +  V E+++I+
Sbjct: 488 PTAEVQAMLKEIGSGELKDGI--LAADLLRRPEITYNKIAEIVSRETSVTDDVAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I 
Sbjct: 546 VKYEGYIEKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|303240050|ref|ZP_07326571.1| glucose inhibited division protein A [Acetivibrio cellulolyticus
           CD2]
 gi|302592319|gb|EFL62046.1| glucose inhibited division protein A [Acetivibrio cellulolyticus
           CD2]
          Length = 629

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/622 (44%), Positives = 392/622 (63%), Gaps = 7/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA  +A+LG  TA+      +IG+M CNP IGG  KGHLVREIDA
Sbjct: 7   EYDVVVVGAGHAGCEAALASARLGVKTAVFAINLDSIGNMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLDV Q E+
Sbjct: 67  LGGEMGKNTDKTFIQSKILNSAKGPAVYSLRAQVDRRSYQIEMKHTLEKQENLDVKQAEI 126

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                E    K  I+ +     S+  C  ++LTTGT+L+G I IG +    G  G  P+N
Sbjct: 127 IEILREEKDGKFKITGVKTHTGSIYNCKAIILTTGTYLKGKIIIGDVSYSGGPDGLFPAN 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S  +   +  RLKTGTPARL+ ++I + K E+Q  D+ ++PFSF  ++I   Q+ C
Sbjct: 187 KLSDSLKEMGIELLRLKTGTPARLNRRSIDFSKMEEQPGDDTIVPFSFENEEIKKEQVSC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN ETH II EN+  S +Y G I+  GPRYCPSIEDK+VRF E+  HQ+F+EP GL
Sbjct: 247 YLTYTNSETHSIIRENLHRSPLYGGMIEGIGPRYCPSIEDKVVRFAEKESHQVFVEPMGL 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y  G+ST+LPE++Q + ++T+PGLE V+++R  YAIEYD IN  +L  +LE K I
Sbjct: 307 NTQEMYLQGMSTSLPEDVQIKMMKTLPGLENVSVMRNAYAIEYDGINSTQLNLSLEFKHI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQING++GYEEA +QG++AGIN+ARK    + +   R+++YIGV+IDDL +KG 
Sbjct: 367 DGLFSAGQINGSSGYEEAGSQGIMAGINAARKVKGEEPVILDRSEAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTPIG + G I E R ++F     E       L+ 
Sbjct: 427 KEPYRMMTSRSEYRLLLRQDNADIRLTPIGYRAGLISEERYRKFEIKKMEIEEEIKRLER 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +      +  +  K     ++     + L  P+    +L +I  +  + S  V E++ 
Sbjct: 487 THVPPSEKVNAFLESKNSTPIKSGMKLSDLLKRPELDYDSLGAIDENRPELSFQVREQVS 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQM++ ++ K  E R + KD DY ++  L  E ++KL+ +KP ++ QAS+
Sbjct: 547 ITIKYEGYIKRQMLQVEQFKKLENRKLSKDLDYIAIQGLRLEARQKLNQVKPESVGQASR 606

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G++PA +++LLIY+++N  K
Sbjct: 607 ISGVSPADISVLLIYLEQNRRK 628


>gi|107104666|ref|ZP_01368584.1| hypothetical protein PaerPA_01005745 [Pseudomonas aeruginosa PACS2]
          Length = 620

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/611 (47%), Positives = 377/611 (61%), Gaps = 5/611 (0%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL G M 
Sbjct: 2   IGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDALGGAMA 61

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
              D  GIQFR+LN +KGPAVR  R QADR LY+ A++  + +Q NL + Q        E
Sbjct: 62  EATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACDDLIVE 121

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
           ++ +  +V Q         VVLTTGTFL G+IHIG      GR GD PS +L     +  
Sbjct: 122 QDQVRGVVTQMGLRFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARRLRELP 181

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLET 249
              GRLKTGTP R+DG+++ +    +Q  D  +   SF+  K  +  Q+ C IT TN  T
Sbjct: 182 LRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITHTNART 241

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  +YPNG
Sbjct: 242 HEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHELYPNG 301

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           IST+LP ++Q Q +R+I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF AGQI
Sbjct: 302 ISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLFFAGQI 361

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGTTGYEEA AQGL+AG N+A +S   D  C  R ++YIGV++DDL + G  EPYRMFTS
Sbjct: 362 NGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPYRMFTS 421

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS 489
           RAEYR+ LR DNAD RLT  G +LG + +RR   F    +        LKS  +      
Sbjct: 422 RAEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVRPNTPQ 481

Query: 490 STSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYT 546
             +I+ +              LS P+     L  I  DA   +  V E+++I + YA Y 
Sbjct: 482 GDAIAERFGTPLTHEYNLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTKYAGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            RQ  E   ++  E   +P D DY  +  LS E++ KL+  +P  L QAS+I G+TPAA+
Sbjct: 541 DRQQEEISRLRASEDTRLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGVTPAAI 600

Query: 607 NLLLIYIKKNT 617
           +LLLI++KK  
Sbjct: 601 SLLLIHLKKRA 611


>gi|332995871|gb|AEF05926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alteromonas sp. SN2]
          Length = 633

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 398/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             +++DVIV+GGGHAG EAA  AA++G++T L+TH   TIG MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTQAFDVIVVGGGHAGTEAALAAARMGSNTLLLTHNIETIGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG  AD  GIQFR LN  KGPAVR  R QADR LYR A+++ + SQENL + Q
Sbjct: 63  IDALGGAMGLAADQGGIQFRTLNSSKGPAVRATRAQADRTLYRQAIRKIVESQENLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + ++ +V Q     +  TVVLT GTFL G IHIG      GR GD PS +
Sbjct: 123 QSVDDLVVENDQVTGVVTQMGLKFKAKTVVLTVGTFLGGTIHIGLENYRGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIEC 240
           L +      F   RLKTGTPARLD +++ +   + Q  D     FSFM ++ +  +QI C
Sbjct: 183 LADRLRALPFRVDRLKTGTPARLDARSLDFSVMQAQPGDNPTPVFSFMGNREMHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL
Sbjct: 243 YITHTNEKTHDIIRGGLDRSPMFTGVIEGIGPRYCPSIEDKITRFADKDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  VYPNGIST+LP +IQ   +R+I G E  +I+RPGYAIEYD+ +P++L  TLE K I
Sbjct: 303 NSIEVYPNGISTSLPFDIQMNLVRSIKGFENAHIVRPGYAIEYDFFDPRDLKQTLENKFI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG N++ ++ + D +   R  +Y+GV+IDDL + G 
Sbjct: 363 KGLFFAGQINGTTGYEEAGAQGLIAGANASLQAQEKDPLILRRDQAYMGVLIDDLATMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD+RLT +G ++G + + R   F   ++        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADSRLTALGREIGLVDDARWAAFNTKMEAVEGELQRLRG 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             +   +    +  ++      K  +  E +  P+ + + L  I          +  E++
Sbjct: 483 QWVHKDHGATPALNTLLKTPVSKEHSLEELIRRPEMTYRQLMDIESIGPGLADPIAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQM E  + +  E  L+P D D++ +  LSNE+  KL+  +P  + +AS
Sbjct: 543 EIQIKYAGYIARQMDEIAKTQRHENSLLPVDLDFTKISGLSNEVVAKLTEARPETIGKAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA++LLL+Y+KK+ +
Sbjct: 603 RISGITPAAISLLLVYLKKHGM 624


>gi|258517428|ref|YP_003193650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781133|gb|ACV65027.1| glucose inhibited division protein A [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 634

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 384/621 (61%), Gaps = 4/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA  +A++G  T ++T     +G M CNPA+GG  K  LVREIDA
Sbjct: 7   DYDVVVVGAGHAGCEAALASARMGCKTLVVTVNLDNVGLMPCNPAVGGPAKSQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G   D   IQ R+LN  KGPAV   R QAD+ LY + M+R + +Q NL + Q  +
Sbjct: 67  LGGEIGNNTDQVAIQMRMLNTAKGPAVHALRAQADKNLYHVNMKRVLENQPNLFLKQLTI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  ++    +   C  V+LTTGT+L+G I IG L    G  G+ PS  L +
Sbjct: 127 EKILVENDKVVGVIAAAGARFACKAVILTTGTYLKGRIIIGDLAYSGGPQGNFPSIGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GR KTGTP R+D  ++ + K   Q  D+RL+ FSF +     +Q+ C +T 
Sbjct: 187 SLKEIGLELGRFKTGTPPRIDRNSVDFSKMSIQPGDDRLLNFSFESKVEDRKQVPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+II +N+  S +++G IK  GPRYCPSIEDK+VRF E+  HQ+F+EPEGL T  
Sbjct: 247 TNENTHKIIRDNLHRSPLFAGVIKGTGPRYCPSIEDKVVRFSEKPKHQVFIEPEGLTTTE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G++T+LPE++Q   +RTIPGLEKV I+R GYAIEYDY+ P +L  +LE+KKISGLF
Sbjct: 307 MYVQGMNTSLPEDVQLAMLRTIPGLEKVEIMRTGYAIEYDYLPPSQLKLSLESKKISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGINS     + +    SR D+YIGV+IDDL +KG+ EPY
Sbjct: 367 SAGQINGTSGYEEAAAQGIMAGINSVLYIKEKEPFILSRADAYIGVLIDDLVTKGITEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+ +G  LG I + R  RF    ++  F    L SL +T
Sbjct: 427 RLLTSRAEYRLLLRQDNADLRLSDMGYNLGLIQQDRYDRFCNKREKIKFEIERLSSLSVT 486

Query: 485 SKNLSSTSIS----FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                   +      +   +       L  P+ S ++L  I  +  + S  +IE ++I+ 
Sbjct: 487 VNENVKQILKNIGTSEIPQQGIKMASLLRRPEVSYKDLIKINKEKVELSDDIIEEVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  + ++ K  E RL+P   DYS +  L+ E   KL+ +KP ++ QAS+I G
Sbjct: 547 KYEGYIKKQTAQIEKFKKIEGRLLPAALDYSKVRGLAAEAALKLNQIKPLSIGQASRIGG 606

Query: 601 MTPAALNLLLIYIKKNTVKLN 621
           + PA +++L+IY+++     +
Sbjct: 607 VNPADISVLMIYLEQQRRNRS 627


>gi|167038668|ref|YP_001666246.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167041018|ref|YP_001664003.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Thermoanaerobacter sp. X514]
 gi|256751461|ref|ZP_05492339.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913771|ref|ZP_07131088.1| glucose inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307725543|ref|YP_003905294.1| glucose inhibited division protein A [Thermoanaerobacter sp. X513]
 gi|320117060|ref|YP_004187219.1| glucose inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|205831567|sp|B0K8H8|MNMG_THEP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831568|sp|B0K5N3|MNMG_THEPX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166855258|gb|ABY93667.1| glucose inhibited division protein A [Thermoanaerobacter sp. X514]
 gi|166857502|gb|ABY95910.1| glucose inhibited division protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749680|gb|EEU62706.1| glucose inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890456|gb|EFK85601.1| glucose inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307582604|gb|ADN56003.1| glucose inhibited division protein A [Thermoanaerobacter sp. X513]
 gi|319930151|gb|ADV80836.1| glucose inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 633

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/622 (43%), Positives = 384/622 (61%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVAVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+
Sbjct: 67  LGGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFDSGPSGLFPANQLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T 
Sbjct: 187 TLKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  
Sbjct: 247 TNKRTHEIIMANIHRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNKPSVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R ++F K   +       L  +++ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMRRLLGVMIK 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  K      T    Y  L  P+   ++   +  +        V E++ I  
Sbjct: 487 PSEEVNNFLISKGSTPLVTGVDLYTLLKRPEIDYKSTKFLDKNRPDDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + +  K  E + IP+D DY  +  LSNE KEKL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYIMKQLRQVEHFKALENKKIPEDIDYYQIHGLSNEAKEKLTKIRPTSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLIY+++      +
Sbjct: 607 VSPADISVLLIYMQQLRRNKED 628


>gi|71909712|ref|YP_287299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dechloromonas aromatica RCB]
 gi|123626245|sp|Q478A2|MNMG_DECAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71849333|gb|AAZ48829.1| Glucose-inhibited division protein A subfamily [Dechloromonas
           aromatica RCB]
          Length = 628

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/618 (47%), Positives = 395/618 (63%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA+T L+TH   T+G+MSCNP+IGG+GKGHLVRE+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARAGANTLLLTHNLDTLGAMSCNPSIGGIGKGHLVREVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL +      
Sbjct: 67  GGAMAAATDEAGIQFRILNASKGPAVRATRAQADRVLYKQAIRTRLENQPNLTIFAEACD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q         VVLT GTFL G IH+G      GRMGD PS SL + 
Sbjct: 127 DLIVEGDKVCGAVTQLGIRFMAEAVVLTAGTFLNGKIHVGLENYTGGRMGDPPSVSLASR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP RLDGKTI +   E+Q +D+ L  FSF+ +   +  Q+ C IT 
Sbjct: 187 LKELKLPQGRLKTGTPPRLDGKTIDFSVMEEQHSDDPLPVFSFLGNAAQHPKQLPCWITE 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++N H +FLEPEGL T  
Sbjct: 247 TNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKNQHNVFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG+ST+LP +IQ   +R+I G+E  +I+RPGYAIEYD+ +P+ L  TLETK I GLF
Sbjct: 307 IYPNGVSTSLPFDIQLALVRSIRGMENCHILRPGYAIEYDFYDPRGLKDTLETKAIHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+ R        C  R ++Y+GV++DDL ++GV +PY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGINAVRYVRGQSGWCPKRNEAYLGVLVDDLITRGVSDPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F +        +  LKS  + 
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTEQGRELGLVDDVRWTAFCQKRDAIAAEQERLKSTWVN 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIES 540
            K   +     +  K        +E L  P+ +  +L ++      +   LV+E+L+I +
Sbjct: 487 PKITPADDCIRVLGKAIDHEYNLFELLRRPEVTYTSLLTLPGAGEAQTDPLVVEQLEISA 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E  +    E  ++P + DYSS+  LSNE+++KL+  KP  + QAS+I+G
Sbjct: 547 KYQGYIDRQAEEVAKSSSYENTVLPSELDYSSVAGLSNEVRQKLAQHKPQTIGQASRIQG 606

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLLI++K++ +
Sbjct: 607 ITPAAISLLLIHLKRHNL 624


>gi|296137580|ref|YP_003644822.1| glucose inhibited division protein A [Thiomonas intermedia K12]
 gi|295797702|gb|ADG32492.1| glucose inhibited division protein A [Thiomonas intermedia K12]
          Length = 676

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/631 (46%), Positives = 392/631 (62%), Gaps = 15/631 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DV+VIGGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 37  RNFDVVVIGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 96

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR+LY+ A++  +  Q NL + Q  
Sbjct: 97  ALGGAMAEATDEAGIQFRILNASKGPAVRATRAQADRQLYKRAIRGRLEDQPNLWLFQQA 156

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 E       ++++V Q     R  TVVLT GTFL G IHIG  +  AGR GD PS
Sbjct: 157 ADDLLVESTGQGERVTAVVTQTGIRFRTRTVVLTAGTFLDGKIHIGLDQYAAGRAGDPPS 216

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-Q 237
             L           GRLKTGTPAR+DG+TI + K  +Q  D   +P FSF+     +  Q
Sbjct: 217 LRLSARLKALALPQGRLKTGTPARIDGRTIDFSKLIEQPGDLNPMPVFSFLGSADQHPAQ 276

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEP
Sbjct: 277 VACWITHTTEQTHDIIRAGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKSSHQIFLEP 336

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL T+  YPNGIST+LP ++Q   + +IPGLE  +++RPGYAIEYDY NP  L  +LET
Sbjct: 337 EGLQTNEFYPNGISTSLPFDVQIAMVHSIPGLENAHLLRPGYAIEYDYFNPMALKTSLET 396

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    D  C  R  +Y+GV++DDL +
Sbjct: 397 KAIDGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGRDPWCPRRDQAYLGVLVDDLVT 456

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           
Sbjct: 457 KGVSEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGVVNDARWDAFCRKRDAIEREIQR 516

Query: 478 LKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDARKFS 529
           L++  +T ++L    + ++  K   +     + L  P+     L      +  P+     
Sbjct: 517 LRTTWVTPQSLPPEQAEALLGKSIEREYNLADLLRRPELRYDTLAAFPHPAFAPEFP-LG 575

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
               E+++I   YA Y  RQ  E      +E   +P D DY  +  LS E+++KL+  +P
Sbjct: 576 ETEREQVEIHLKYAGYIERQQDEVDRAAQQESLRLPADLDYREVSGLSIEVQQKLNQARP 635

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
             L  AS++ GMTPAA++LLLI+++K  +K 
Sbjct: 636 ETLGLASRLSGMTPAAVSLLLIHLRKGVLKK 666


>gi|148251783|ref|YP_001236368.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bradyrhizobium sp. BTAi1]
 gi|166222911|sp|A5E8G8|MNMG_BRASB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146403956|gb|ABQ32462.1| Glucose-inhibited division protein A [Bradyrhizobium sp. BTAi1]
          Length = 625

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/620 (54%), Positives = 435/620 (70%), Gaps = 1/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA  +A++GA TAL+TH  +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVIGGGHAGCEAAEASARMGARTALVTHHFATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I    NL V++GE 
Sbjct: 67  LDGLMGRVADAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQAAIRETANLTVVEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ + + D   + C  +V+TTGTFLRG+IH+G+   PAGR+G++P+  L  
Sbjct: 127 DQLIVADGQITGLRLADGRPLACGAIVITTGTFLRGLIHLGEKTWPAGRVGEAPALGLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F  GRLKTGTP RLDG TI W   E Q  D+   PFS +T  IT  QI+CGITR
Sbjct: 187 SLEAIGFRLGRLKTGTPPRLDGTTIDWSAVEMQPGDDPPEPFSVLTQTITTPQIQCGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG IKS GPRYCPS+EDKIVRFG+R+GHQIFLEPEGL+   
Sbjct: 247 TTTATHDVIRANVHRSPMYSGQIKSTGPRYCPSVEDKIVRFGDRDGHQIFLEPEGLDDTT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q   + TIPGLE+V +IRPGYAIEYD+++P+EL PTL+TK++ GLF
Sbjct: 307 VYPNGISTSLPEEVQLALLPTIPGLERVRMIRPGYAIEYDHVDPRELEPTLQTKRMRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   + I F R D Y+GVMIDDL ++G+ EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLVAGLNAALTAGGGEPIVFDRADGYVGVMIDDLVTRGITEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +     +      RSL +S+ +T
Sbjct: 427 RMFTSRAEYRLTLRADNADQRLTDKGIALGCVGGDRARFHRTKMDALEAARSLARSVTIT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++  +DG+ R+A+E ++YP+     +  I P+       +   L+I++ Y  
Sbjct: 487 PNEAAKYGLTLNRDGQRRSAFELMAYPEIGFSEVRGIWPELGTIGPAIAVHLEIDAKYDV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + +E  ++  D DY+ +P LSNE + KL+  +P+ + QA +I+GMTPA
Sbjct: 547 YVRRQSEDVDAFRRDEGLVL-GDIDYALVPGLSNEARAKLTAARPWTIGQAGRIDGMTPA 605

Query: 605 ALNLLLIYIKKNTVKLNEIV 624
           AL +L  Y+++   +   +V
Sbjct: 606 ALGILAAYLRREARRSKAMV 625


>gi|89898871|ref|YP_521342.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodoferax ferrireducens T118]
 gi|122477997|sp|Q21QL5|MNMG_RHOFD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89343608|gb|ABD67811.1| glucose inhibited division protein A [Rhodoferax ferrireducens
           T118]
          Length = 679

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/657 (45%), Positives = 404/657 (61%), Gaps = 39/657 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQHFDVIVVGGGHAGTEAALAAARMGCKTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKAAIRRRLENQPNLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQAGIKFRAKTVVLTAGTFLDGKIHVGLNNYAAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL-------IPFSFMTD-K 232
            L     +     GRLKTGTP RLDG++I + K  +Q  D            FSFM   +
Sbjct: 182 RLSARLKELKLPQGRLKTGTPPRLDGRSIDFSKCGEQPGDGMPGGMSPVMPVFSFMGRVE 241

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN  TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQ
Sbjct: 242 QHPPQMSCWTTHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADKDSHQ 301

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IFLEPEGL T+  YPNGIST+LP +IQ+  +R++ GLE  +I+RPGYAIEYDY +P++L 
Sbjct: 302 IFLEPEGLTTNEYYPNGISTSLPFDIQYALVRSMAGLENAHILRPGYAIEYDYFDPQQLK 361

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-----SNKLDCICFSRTDSY 407
            + ET+ I GLF AGQINGTTGYEEAAAQGL AG+N+A +     S + +     R ++Y
Sbjct: 362 SSFETRAIGGLFFAGQINGTTGYEEAAAQGLFAGVNAALQAGAQTSWQQETWVPGRDEAY 421

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R + F++ 
Sbjct: 422 LGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTETGRRLGLVDDARWEAFSRK 481

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--- 521
            +  +     L+SL ++ KNL++T    +  K      +  + L  PD +  NL S+   
Sbjct: 482 REAVSRETERLRSLWVSPKNLTATESERVLGKSIEHEYSLADLLRRPDVNYANLMSLEGG 541

Query: 522 -------------------CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
                               P+A  F+++VIE+++I + YA Y  RQ+ E       E  
Sbjct: 542 KYASAELNIPVSRETPAVPLPEAV-FAAVVIEQVEIVAKYAGYIDRQIEEVGRAAHYENL 600

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            +P + DY  + ALS E ++KLS  +P  L QAS++ G+TPAA++LLL+++KK+  K
Sbjct: 601 KLPLELDYLQVSALSFEARQKLSKHRPETLGQASRLSGITPAAISLLLVHLKKSNFK 657


>gi|332286173|ref|YP_004418084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pusillimonas sp. T7-7]
 gi|330430126|gb|AEC21460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pusillimonas sp. T7-7]
          Length = 638

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/632 (47%), Positives = 409/632 (64%), Gaps = 14/632 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EAA  AA+ GAST L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EYDVIVVGGGHAGTEAALAAARTGASTLLLTHNMETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR+LN  KGPAVR  R QADR LYR+A++  + +Q NL + Q  V
Sbjct: 66  LGGAMAYATDKAGIQFRILNSSKGPAVRATRAQADRSLYRMAIRTTLQNQPNLTIFQQSV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + ++  V Q     R  TVVLT GTFL G+IH+G     AGR GD P+ +L  
Sbjct: 126 DDLLLEGDRVAGAVTQIGLKFRGRTVVLTAGTFLNGLIHVGLDHYSAGRAGDPPAITLGQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECGI 242
              +     GRLKTGTP R+D ++I + KTE Q  D   IP FS++    +   Q+ C I
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDARSIDFSKTEVQAGDRDPIPVFSYLGSASMHPEQLPCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           T TN  TH II   +  S +YS    I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL
Sbjct: 246 THTNERTHDIIRSGLDRSPMYSDSGTIEGIGPRYCPSIEDKIHRFADKPSHQIFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNG+ST+LP +IQ   +RT+PGLE   I+RPGYAIEYDY +P+EL  TLET+ I
Sbjct: 306 TTQEIYPNGVSTSLPFDIQLALVRTLPGLENAIIMRPGYAIEYDYFDPRELSSTLETRAI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+AR++  L+     R ++Y+GV++DDL ++GV
Sbjct: 366 KGLFFAGQINGTTGYEEAAAQGLLAGLNAARQAQGLEGWFPKRNEAYLGVLVDDLITRGV 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLT +G  LG + ++R + F+K  ++ +     LKS
Sbjct: 426 TEPYRMFTSRAEYRLSLREDNADMRLTEMGRTLGLVDDQRWEAFSKKREDVSRETERLKS 485

Query: 481 LVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SS 530
             +  K L+   + ++  KQ  K  +  + L  P  + + L ++  +            +
Sbjct: 486 TWINPKTLAHHTAEALLGKQLEKEHSLLDLLKRPQVTYKALMALHKEDGTLVAGPGLEDA 545

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           +  E+++I+  YA Y  +Q  E +    +E + IP D DY ++ +LS E++++L + +P 
Sbjct: 546 VAAEQVEIQIKYAGYVAKQQEEIERQLEQESQAIPPDLDYDAISSLSIEVRQRLKLSRPE 605

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            + QAS++ G+TPAA++LLLI++K+   +   
Sbjct: 606 TVGQASRVSGITPAAISLLLIHLKRLQYRKKA 637


>gi|320539761|ref|ZP_08039422.1| glucose-inhibited cell-division protein [Serratia symbiotica str.
           Tucson]
 gi|320030164|gb|EFW12182.1| glucose-inhibited cell-division protein [Serratia symbiotica str.
           Tucson]
          Length = 629

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 389/619 (62%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QFDVIIIGGGHAGTEAAMAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + ++ NL + Q  V
Sbjct: 66  LGGLMATAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAIRTALENKPNLMIFQQPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +     V Q     R   VVLT GTFL G IHIG      GR GD  + SL  
Sbjct: 126 DDLIVENDHAVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLKNYRGGRAGDPTAISLSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +      RLKTGTP R+D +TI +     Q  D  +  FSFM +   +  Q  C IT
Sbjct: 186 RLRELPLRVNRLKTGTPPRIDARTINFSVLMPQQGDTPVPVFSFMGNASQHPEQRTCYIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH +I  N+  S +YSG I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++
Sbjct: 246 HTNEKTHEVIRNNLDRSPMYSGIIEGIGPRYCPSIEDKVMRFADRNTHQIFLEPEGLTSN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G++   I+RPGYAIEYD+ +P++L PTLE+K I GL
Sbjct: 306 EIYPNGISTSLPFDVQMQIVRSMEGMQNARIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+ R +N+ +     R  SY+GV++DDL++ G  EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAGRYANQDEGWAPRRDQSYLGVLVDDLSTLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  R+ + ++     R  L+ + +
Sbjct: 426 YRMFTSRAEYRLMLREDNADLRLTEKGRDLGLVDDVRWARYCEKLEHIEQERQRLRDIWM 485

Query: 484 TS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIE 539
               +N+   ++  K    +     E L  P+     L S+   +         E+++I+
Sbjct: 486 HPHAENVEQVNLLLKTPLSREANGEELLRRPEMDYSLLTSVAAFSPALEDTQAAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++ +  E  ++P D DY  +  LSNE+  KL+  KP ++ QAS+I 
Sbjct: 546 VKYQGYIARQQEEIEKQQRNENTVLPLDLDYCQVSGLSNEVIAKLNDHKPNSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+++LLI++KK  +
Sbjct: 606 GITPAAISILLIWLKKQGL 624


>gi|299065186|emb|CBJ36352.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum CMR15]
          Length = 647

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/630 (45%), Positives = 384/630 (60%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEAQPGDLDPVPVFSFLGHADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE+ +I+RPGYAIEYDY +P+ L  +LE+K I+G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLEQAHILRPGYAIEYDYFDPRGLKASLESKAIAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +          R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGRAAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRDLGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF----------SICPDARKFS 529
           +    L    +  +  K   +  +  + L  P+ + + L           ++  D    +
Sbjct: 486 VNPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYELLMGMQDGKYAPEALLADEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGANENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|225181152|ref|ZP_03734598.1| glucose inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
 gi|225168121|gb|EEG76926.1| glucose inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
          Length = 627

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 371/618 (60%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y V+VIG GHAG EAA  +A++G  T L+T     +  M CNPAIGG  KGHLVRE+DA
Sbjct: 7   EYHVVVIGAGHAGSEAALASARMGCKTLLLTLNLDAVALMPCNPAIGGPAKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ R+LN  KGPAV   R QAD+ +Y+  M+  + +  NLD+ Q  V
Sbjct: 67  LGGEMGKVIDRTKIQIRMLNTAKGPAVHALRAQADKWVYQREMRTVLENTPNLDLQQATV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  +   I  ++ Q+ +M +   VVLT GT+LRG I +G      G  G   S  L  
Sbjct: 127 ERFQVKGGRIRGVITQNGTMYKTQAVVLTAGTYLRGRIIVGASMTAGGPNGQLASTKLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   +  R KTGTP R+   +I + KT  Q  DE    FSF         + C +T 
Sbjct: 187 YLKRIGLELLRFKTGTPPRIHRDSIDFSKTVIQPGDEDPFSFSFAQVPPKIESVPCWLTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF ER  HQ+FLEPEG NT  
Sbjct: 247 TTEETHRVIQENLHRSPLYAGDIEGVGPRYCPSIEDKVVRFSERPSHQVFLEPEGRNTAE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   ++TIPGLE V I+RPGYAIEYD I+P +L PT+ETK ++GLF
Sbjct: 307 FYVQGMSTSLPEDVQRAMLKTIPGLENVLIMRPGYAIEYDCIDPLQLKPTMETKTVAGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEAAAQG+VAGIN+A        +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQINGSSGYEEAAAQGIVAGINAALTFKGQPPLHIDRSMAYIGVLIDDLVTKGTSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLTP+G + G + E R ++F +  +        L S+ ++
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTPLGHRAGLVSEERFQKFQEKCRAVEEEIERLNSVNIS 486

Query: 485 SKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                +  +     K       A + L  P+ +   +  I  +  + S     +++I+  
Sbjct: 487 PAAAVNDLLQEKGSKPLSGPVAAGQLLKRPELTYDAIIHILGEEHRLSGEAARQVEIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E + +P+D  Y  L  LS E  EKL  ++P ++ QAS+I G+
Sbjct: 547 YQGYIEKQLQQIEKYKKMENKALPEDLPYCDLDGLSTEAVEKLMKIRPRSVGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA + +LL+Y+++   +
Sbjct: 607 SPADIAVLLVYMEQRRRR 624


>gi|17548045|ref|NP_521447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia solanacearum GMI1000]
 gi|21263662|sp|Q8XU65|MNMG_RALSO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|17430351|emb|CAD17116.1| probable trna uridine 5-carboxymethylaminomethyl modification
           enzyme gida(glucose-inhibited division protein a)
           [Ralstonia solanacearum GMI1000]
          Length = 647

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/630 (45%), Positives = 383/630 (60%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +   V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMT-DKITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEAQPGDLDPVPVFSFLGRTDMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNERTHDIIRAGLNRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLEHAHILRPGYAIEYDYFDPRGLKASLESKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +          R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKAAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRDLGVVDDARWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDA-----RKFS 529
           +    L    +  +  K   +  +  + L  P+ + ++L         PDA        +
Sbjct: 486 VNPAILPAADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGGKYAPDAPLADEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + E+++I   Y  Y  RQ  E + +   E   +P DFDY  +  LS E+++KL+  KP
Sbjct: 546 EQIREQIEIGIKYHGYIARQADEVERLGANENTRLPADFDYKQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|294341939|emb|CAZ90368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Thiomonas sp.
           3As]
          Length = 644

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/631 (46%), Positives = 393/631 (62%), Gaps = 15/631 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DV+VIGGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   RNFDVVVIGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR+LY+ A++  +  Q NL + Q  
Sbjct: 65  ALGGAMAEATDEAGIQFRILNASKGPAVRATRAQADRQLYKRAIRGRLEDQPNLWLFQQA 124

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 E       ++++V Q     R  TVVLT GTFL G IHIG  +  AGR GD PS
Sbjct: 125 ADDLLVESTGQAERVTAVVTQTGIRFRTRTVVLTAGTFLDGKIHIGLDQYAAGRAGDPPS 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-Q 237
             L           GRLKTGTPAR+DG+TI + K  +Q  D   +P FSF+     +  Q
Sbjct: 185 LRLSARLKALALPQGRLKTGTPARIDGRTIDFSKLIEQPGDLNPMPVFSFLGSADQHPAQ 244

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEP
Sbjct: 245 VACWITHTTEQTHDIIRAGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKSSHQIFLEP 304

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL T+  YPNGIST+LP ++Q   + +IPGLE  +++RPGYAIEYDY NP  L  +LET
Sbjct: 305 EGLQTNEFYPNGISTSLPFDVQIAMVHSIPGLENAHLLRPGYAIEYDYFNPMALKTSLET 364

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AGIN+A +    D  C  R  +Y+GV++DDL +
Sbjct: 365 KSIDGLFFAGQINGTTGYEEAAAQGLLAGINAALQVQGRDPWCPRRDQAYLGVLVDDLVT 424

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           
Sbjct: 425 KGVSEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGVVNDARWDAFCRKRDAIEREIQR 484

Query: 478 LKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDARKFS 529
           L++  +T ++L    + ++  K   +     + L  P+     L      +  P+     
Sbjct: 485 LRTTWVTPQSLPPEQAEALLGKSIEREYNLADLLRRPELRYDTLAAFPHPAFAPEFP-LG 543

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
               E+++I   YA Y  RQ  E +    +E   +P D DY  +  LS E+++KL+  +P
Sbjct: 544 ETEREQVEIHLKYAGYIERQQDEVERAAQQESLRLPADLDYREVSGLSIEVQQKLNQARP 603

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
             L  AS++ GMTPAA++LLLI+++K  +K 
Sbjct: 604 ETLGLASRLSGMTPAAVSLLLIHLRKGVLKK 634


>gi|145588204|ref|YP_001154801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|189039349|sp|A4SUS3|MNMG_POLSQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145046610|gb|ABP33237.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 639

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/637 (44%), Positives = 396/637 (62%), Gaps = 14/637 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++++DVIV+GGGHAG EAA  +A++G  T LITH    +G+MSCNP+IGG+GKGHLV+E
Sbjct: 3   YSKNFDVIVVGGGHAGTEAALASARMGCDTLLITHSIENLGAMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G M    D AGIQFR+LN  KGPAVR  R Q DR LY+ A++R + +Q NL + Q
Sbjct: 63  IDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQGDRVLYKAAIRRRLENQPNLSLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +  +V Q         VVLT GTFL G IH+G      GR GD  + S
Sbjct: 123 AAVDDLLVKGDEVQGVVTQMGLEFMAKKVVLTAGTFLDGKIHVGLNNYAGGRAGDPAAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-QIE 239
           L     +     GRLKTGTP R+DG+TI +    +Q  D   +P FS++     +  Q+ 
Sbjct: 183 LSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMLEQPGDLDPVPVFSYLGRPEQHPKQVP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I+ TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  RN HQIFLEPEG
Sbjct: 243 CWISHTNEQTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASRNSHQIFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+  YPNGIST+LP ++Q + +R+I GLE   I+RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 303 LTTNEFYPNGISTSLPFDVQWELVRSIRGLESAVIVRPGYAIEYDFFDPRHLRHSLETKA 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQINGTTGYEEAAAQG++AGIN+   +   +     R++SYIGV++DDL ++G
Sbjct: 363 IGGLYFAGQINGTTGYEEAAAQGMLAGINAGLAAQGKEAWLPKRSESYIGVLVDDLITRG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG  LG + + R + F +  +  +   S LK
Sbjct: 423 VQEPYRMFTSRAEYRLSLREDNADMRLTAIGRDLGLVDDYRWEVFCRKQEAVSRETSRLK 482

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---------CPDARK 527
            + +  K+  +   T +  ++        E L  P  + + + ++           D   
Sbjct: 483 DIWVGPKHEIAPLVTQLLGQELSHECNLTELLRRPGITYEAITALGNRIWAPESLDDDLG 542

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            ++ + ++++I   Y  Y  RQ +E    +  E   +P+  DYS +  LS E+++KL++ 
Sbjct: 543 LAAQISDQVEISVKYQGYIERQAVEIARQEHNETFPLPEGLDYSQVLGLSKEVQQKLNLH 602

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           KP  L QA +I G+TPAAL+LLL+++KK   +  E +
Sbjct: 603 KPETLGQAGRISGVTPAALSLLLVHLKKGLGRTQETI 639


>gi|27262248|gb|AAN87405.1| glucose-inhibited division protein A [Heliobacillus mobilis]
          Length = 643

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/624 (44%), Positives = 386/624 (61%), Gaps = 7/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AA++G  T ++T     +  M CNPAIGG  KGHLVREIDA
Sbjct: 15  QYDVIVIGAGHAGCEAALAAARMGCKTLILTISWDNVALMPCNPAIGGPAKGHLVREIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA  IQ R+LN  KGPAV   R QAD++ Y+  M + +  QENLDV Q  V
Sbjct: 75  LGGQMGVTIDATAIQIRMLNTGKGPAVHALRAQADKKKYQQYMIQVLEHQENLDVRQAMV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q  +      VV+T+GT+L+G I IG L  P G  G  PS  L  
Sbjct: 135 ETIRVEDGQVQGVLTQTGAFFAAPNVVITSGTYLKGRIIIGDLHYPGGPNGYFPSTELAA 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTPAR+DG+T+ + K  +Q  D   + FSF++ +   +QI C +T 
Sbjct: 195 SLREVGVQLGRFKTGTPARVDGRTVDFTKMVEQPGDSDPLNFSFISSRFERKQISCWLTY 254

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+II +N+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +T  
Sbjct: 255 TTEETHQIIRDNLHRSPLYAGVIEGTGPRYCPSIEDKVVRFADKKSHQVFVEPEGADTHE 314

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE+IQ   +R+I G+E V IIRPGYAIEYDY+ P +L  +LE + I GLF
Sbjct: 315 MYVQGMSTSLPEDIQLAMLRSIIGMENVKIIRPGYAIEYDYVVPTQLKLSLEHQTIQGLF 374

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQG++AGIN+A ++   + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 375 TAGQVNGTSGYEEAAAQGIIAGINAACRAQGKEPLILKRSDAYIGVLIDDLVTKGTNEPY 434

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG  +G + + R +RF + ++     + L     +T
Sbjct: 435 RMLTSRAEYRLLLRQDNADQRLTEIGCSIGLVDDVRYERFQRKMERVEQEKELWSKTFVT 494

Query: 485 SKNLSSTSISFKQ----DGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQ 537
             N+    I  ++      K  + ++ L  P+ S  +L S+             V E+++
Sbjct: 495 PGNIRLQEILEQKRSAPLTKGLSLFDLLRRPELSFDDLHSLLEYDEARETVDPEVAEQVE 554

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + +  Y  +Q  + +     E R +P D DY+ +  LS E ++KL   +P +L QAS+
Sbjct: 555 ISAKFEGYLVKQQAQVERFNKLESRRVPPDLDYALIGGLSTEARQKLIARRPESLGQASR 614

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+ PA ++LLL+Y+++   + N
Sbjct: 615 ISGVNPADISLLLVYLEQRRRRDN 638


>gi|317496584|ref|ZP_07954932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella moribillum M424]
 gi|316913291|gb|EFV34789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemella moribillum M424]
          Length = 627

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/624 (43%), Positives = 381/624 (61%), Gaps = 7/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  A++ G  T +IT    TIG M CNP++GG  KG +VRE+D
Sbjct: 6   KEYDVIVIGGGHAGIEAAHAASRKGVKTLMITINLDTIGFMPCNPSVGGPAKGIVVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRVAD   IQ ++LN  KGPAVR  R Q+D+  Y+  M+R +    NLD+ Q  
Sbjct: 66  ALGGLMGRVADKTNIQSKMLNTAKGPAVRALRMQSDKVAYQTEMKRILEGTPNLDIEQAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +  +   +++TTGT+LRG I IG +K  +G     PS  L 
Sbjct: 126 VRELIIENNKVVGLKTMLGTAYKAKVIIITTGTYLRGEIVIGDVKYSSGPNHQMPSIDLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  FD  R KTGTP R++  ++ + +T  Q  D     FS+ T +    QI C +T
Sbjct: 186 KQLEELGFDLVRFKTGTPPRVNADSVDFSQTAIQPGDNEKYAFSYETTEYVEDQIPCWLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II  N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG NT 
Sbjct: 246 YTNTTTHEIIDRNLGRSAMYSGVIKGTGPRYCPSIEDKYVRFNDKERHQLFLEPEGRNTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP+++QH  +R+I GLE   IIR GYAIEYD +NP  L+PTLETK I GL
Sbjct: 306 EIYIQGLSTSLPDDVQHDMVRSIAGLENAVIIRNGYAIEYDAVNPMTLWPTLETKLIDGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QG++AGIN+A K    + +   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FTAGQINGTSGYEEAAGQGIMAGINAACKILGEEPMTLGRDEAYIGVLIDDLVTKGTNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RLT      G + E R ++F++  Q        LK+  +
Sbjct: 426 YRLLTSRAEHRLLLRHDNADMRLTEKAYNYGLVTEERYRKFSEKRQAVADEIERLKTFRI 485

Query: 484 TS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           T      + L   + +  +DG    A + L  P+ S +N+  +  D+      ++E+++I
Sbjct: 486 TPTANTLEKLVELNSAEIRDGI--LAIDMLRRPELSHKNVMYLADDSTILPKDIVEQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  + + + +++K      IP D DY  +P+L+ E +EKL  + P  + QAS+I
Sbjct: 544 EVKYEGYIKKSLQQVEKLKKMNAMKIPSDLDYDEVPSLAIEAREKLKKVLPLTIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ PA +++LL+++++     NE
Sbjct: 604 SGVNPADISILLVFLEQRRGMNNE 627


>gi|15896964|ref|NP_350313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium acetobutylicum ATCC 824]
 gi|21263674|sp|Q97CW3|MNMG_CLOAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15026840|gb|AAK81653.1|AE007868_9 Glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Clostridium acetobutylicum ATCC 824]
 gi|325511141|gb|ADZ22777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium acetobutylicum EA 2018]
          Length = 626

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/615 (44%), Positives = 390/615 (63%), Gaps = 3/615 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVIVIGGGHAGCEAA  A+++G  T + T    +I  M CNP IGG  KGHLV+E
Sbjct: 5   FSGDYDVIVIGGGHAGCEAALAASRMGCRTLMCTMNLDSIAMMPCNPNIGGTAKGHLVKE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ R+LN+ KGPAV   R QAD+  Y   M+  + +QE+L + Q
Sbjct: 65  IDALGGEMGVNIDKTFIQSRMLNISKGPAVHSLRAQADKVRYSEVMRNVLENQEDLYLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   + E   +  IV ++ +    +T+VL TGT+LR  I IG++    G  G  P+N 
Sbjct: 125 IEVISLDIEDGKVKGIVTKNGACFTANTIVLATGTYLRSRIIIGEVNYSGGPSGLFPANE 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S +       R KTGTPAR++ +++ + K  +Q  DER+IPFSF+ DK+   QI C 
Sbjct: 185 LSQSLIDVGIKLRRFKTGTPARINKRSVDFSKMVEQPGDERIIPFSFLNDKLEKEQISCY 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH +I ENI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG N
Sbjct: 245 LTYTNEKTHEVIKENIDRSPLYNGTIKSVGPRYCPSIEDKVMRFPDKQQHQIFIEPEGEN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LPEE+Q + ++T+PGLE V I++  YAIEYD I+P +L  +LE K + 
Sbjct: 305 TNDLYVGGMSSSLPEEVQIKMLKTVPGLEDVEILKTAYAIEYDCIDPTQLKLSLEFKDVK 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NG++GYEEAA+QG++AGIN+A      + +   R+D YIGV+IDDL +KG  
Sbjct: 365 GLFGAGQFNGSSGYEEAASQGIIAGINAALMVKNKEPLILGRSDGYIGVLIDDLVTKGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT +G K+G + E R ++F           + LK +
Sbjct: 425 EPYRMMTSRAEYRLLLRQDNADLRLTELGHKIGLVDENRYEKFIGRKNAIEEELNRLKKV 484

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +T+K   +     +      K  + YE +  P+     L ++  D +  +  +I+ + I
Sbjct: 485 QITNKKEVNDFLEGLGSVSLKKPISLYELIRRPELDYDKLQTLDIDRKDLAQDIIDEVNI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ +  + K  EKR+IP+D DY+S+  L  E  +KLS L+P NL QAS+I
Sbjct: 545 MIKYEGYIEKQLEQVDQFKKFEKRVIPEDIDYNSIKNLRTEAIQKLSKLRPVNLGQASRI 604

Query: 599 EGMTPAALNLLLIYI 613
            G++P+ +++L+IY+
Sbjct: 605 SGVSPSDISVLMIYL 619


>gi|251778676|ref|ZP_04821596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082991|gb|EES48881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/616 (45%), Positives = 395/616 (64%), Gaps = 3/616 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVIVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N +  I+ ++ ++ R   V+L TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEGNKVIGIITRNGAIFRSKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSGNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I ENI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKENIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    D +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEDPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G + E R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTEERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 NLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             ++    ++   +  K  + YE +  P+    +L  +  +  + S  + E++ I + Y 
Sbjct: 491 RETNEFLLAVGSAELKKPISFYELIKRPEVDYFSLKDLDMEREELSEDIGEQINIIAKYE 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ ++P ++ QAS+I G++P
Sbjct: 551 GYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIRPISIGQASRISGVSP 610

Query: 604 AALNLLLIYIKKNTVK 619
           A +++LLIY++    K
Sbjct: 611 ADISVLLIYLEHYYNK 626


>gi|304318132|ref|YP_003853277.1| glucose inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779634|gb|ADL70193.1| glucose inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 623

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/617 (44%), Positives = 382/617 (61%), Gaps = 4/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV VIG GHAGCEAA   A+LG  T        +I  M CNPAIGG  K +LVREIDA
Sbjct: 7   SYDVAVIGLGHAGCEAALATARLGLKTVAFAINLDSIALMPCNPAIGGPAKTNLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R LN  KGPAVR  R Q+D++ Y+  M+  +  QENLD+ Q EV
Sbjct: 67  LGGQMAINTDETLIQERTLNTSKGPAVRALRAQSDKKRYQFNMKYTLEKQENLDIKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   + S++ ++ +   C + ++TTGT+LRG I IG +    G  G  P+N L  
Sbjct: 127 VDIEVENGEVKSVITKNGARYLCKSCIVTTGTYLRGRIIIGDVSYSGGPNGLFPANELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              + +    R KTGTPAR+D K+I +D  E Q  DE++ PFS++ D+I   QI C +T 
Sbjct: 187 CLERLNIKLMRFKTGTPARVDKKSINFDAMEIQPGDEKIKPFSYLHDEINVEQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +IM NI  S +YSG+IK  GPRYCPSIEDK+V+F ++  HQ+F+EPEG NT+ 
Sbjct: 247 TNSRTHEVIMRNIGRSPLYSGEIKGVGPRYCPSIEDKVVKFPDKPRHQLFIEPEGRNTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S+++PE++Q +F+RTI GLE V ++RPGYAIEYD I+P +L  +LE K ISGLF
Sbjct: 307 MYVQGMSSSMPEDVQIEFLRTIKGLENVKVMRPGYAIEYDCIDPTQLKQSLELKTISGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNREPFILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G ++G + + R +RF K   +Y      LK+ ++ 
Sbjct: 427 RMLTSRAEYRLILRQDNADFRLTEKGRQIGLVDDERYERFLKKKIQYEKEMERLKTAMIV 486

Query: 485 SKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIES 540
             +  +  +  K      T    Y+ L  P+    +   I  D  +     V E++ I  
Sbjct: 487 PSDFVNEYLKSKGSSPIVTGITMYDLLKRPEIDYISSKVIDKDRPEDIRDDVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP   +Y  +  +S E ++KL  + P ++ QAS+I G
Sbjct: 547 KYEGYIKKQLEQVEKFKALENKKIPSWINYDDIKGISIEARQKLKSIMPTSVGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNT 617
           ++PA ++++LIY++   
Sbjct: 607 VSPADISVILIYMQSRR 623


>gi|300689821|ref|YP_003750816.1| glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum PSI07]
 gi|299076881|emb|CBJ49494.1| Glucose-inhibited division protein A, tRNA uridine
           5-carboxymethylaminomethyl modification enzyme
           [Ralstonia solanacearum PSI07]
          Length = 647

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/630 (45%), Positives = 387/630 (61%), Gaps = 15/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V
Sbjct: 66  LGGAMALATDEGGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRRLENQPNLMLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +     V Q     R   VVLT GTFL G IH+G      GR GD  + SL  
Sbjct: 126 EDLLVEGDRAVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTD-KITNRQIECGI 242
              +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+    +  RQ+ C +
Sbjct: 186 RLKELKLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDLDPVPVFSFLGRADMHPRQVPCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 246 THTNQHTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNG+ST+LP ++Q   I ++ GLE  +I+RPGYAIEYDY +P+ L  +LE+K I G
Sbjct: 306 NEFYPNGVSTSLPFDVQLDLIHSMRGLENAHILRPGYAIEYDYFDPRGLKASLESKAIGG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+  +    +     R  +Y+GV++DDL ++GV E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWTPRRDQAYLGVLVDDLITRGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LG + + R   F +     +     LKS  
Sbjct: 426 PYRMFTSRAEFRLSLREDNADMRLTEAGRGLGVVDDVRWDAFNRKRDAVSRETERLKSTW 485

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-----SICPDA-----RKFS 529
           ++   L    +  +  K   +  +  + L  P+ + ++L         P+A        +
Sbjct: 486 VSPAILPVADAEPVLGKGIEREYSLADLLRRPNVTYESLMGMQGAKYAPEAPLADEPLLA 545

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E+++I   Y  Y  RQ  E + +   E   +P DFDY+ +  LS E+++KL+  KP
Sbjct: 546 EQVREQIEIGIKYHGYIARQADEVERLGANESTRLPADFDYTQVRGLSIEVQQKLAQHKP 605

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             + QAS+I G+TPAA++LLL+++KK  ++
Sbjct: 606 ETIGQASRISGITPAAVSLLLVHLKKGVLR 635


>gi|254468635|ref|ZP_05082041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [beta proteobacterium KB13]
 gi|207087445|gb|EDZ64728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [beta proteobacterium KB13]
          Length = 634

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/625 (47%), Positives = 404/625 (64%), Gaps = 4/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + +YDVIVIGGGHAG EA+  AA++G  T LITH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 4   FDSNYDVIVIGGGHAGTEASLAAARMGQKTLLITHNIDTLGQMSCNPSIGGIGKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M + AD AGI FR+LN  KGPAVR  R QADR LYR A++  + +Q+NL + Q
Sbjct: 64  IDALGGVMAKAADQAGIHFRMLNASKGPAVRATRAQADRVLYRKAIKHHLENQDNLSIFQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +++ +  +V +        +V+LT GTFL GV+H+G     AGR GD  S +
Sbjct: 124 QPVDDLIIKEDQVQGVVTESGIHFYAKSVILTAGTFLDGVVHVGLKNYQAGRAGDPSSKT 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   + +   GRLKTGTP R+DG++I +   E+Q  D     FS  +  + +  QI C
Sbjct: 184 LAHRLNQLNLPVGRLKTGTPPRIDGRSIDYSVMEEQPGDAPTPYFSLQSPLLEHPEQISC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL
Sbjct: 244 WITHTNSATHNIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQIFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q++ +R+I GLE+  I RPGYAIEY+Y +P+ L  +L+TK I
Sbjct: 304 TTHEIYPNGISTSLPFDVQYELVRSIKGLEQAYITRPGYAIEYNYFDPRNLQSSLQTKTI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGLVAGIN+A K+      C  R +SYIGVMIDDL ++GV
Sbjct: 364 EGLFFAGQINGTTGYEEAAAQGLVAGINAALKAQNKPSWCPKREESYIGVMIDDLITRGV 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G  LG + + +  RF K  Q  +   +++K 
Sbjct: 424 TEPYRMFTSRAEYRLLLREDNADQRLTSAGYDLGVVNQTQYDRFMKKDQGIHSCLNIMKK 483

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            V   + + +     I  K+  +  + Y+ +  P+ + + L       + +   +IE+ +
Sbjct: 484 TVTKPEAIPADDQQRIFGKKLEREYSIYDLIKRPNVNWKQLQDFMRLDQDYDDQIIEQAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y+ Y  RQ  E  +I+ +    IPK+ ++  +  LSNE  +K   + P N+ QASK
Sbjct: 544 ISAKYSGYISRQSDEILKIQSQYAMKIPKNMNFEDISGLSNEAVQKFKDVMPENIQQASK 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G+TPA + LL++Y+KK+ VK ++
Sbjct: 604 ISGITPANIALLVVYLKKSAVKQDK 628


>gi|319778790|ref|YP_004129703.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Taylorella equigenitalis MCE9]
 gi|317108814|gb|ADU91560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Taylorella equigenitalis MCE9]
          Length = 631

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/624 (49%), Positives = 404/624 (64%), Gaps = 12/624 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A+ GA T L+TH   TIG MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALASARTGAKTLLLTHNIETIGQMSCNPSIGGIGKGHLVKELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQFR+LN  KGPAVR  R QADR LY+ A++ +I +Q+NL V Q  
Sbjct: 65  ALGGAMALAADEAGIQFRILNSSKGPAVRATRIQADRLLYKQAIRSKIENQQNLFVFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q     +  +VVLT GTFL G+IHIG      GR GD PS SL 
Sbjct: 125 VEDLILEGDTVVGAITQIGYKFKSKSVVLTAGTFLNGLIHIGLTHYKGGRAGDPPSKSLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFM-TDKITNRQIECG 241
           +   +     GRLKTGTP RLD ++I + K  +Q  D   IP FSFM ++++  +QI C 
Sbjct: 185 DRLKELKLPQGRLKTGTPPRLDSRSIDFSKLIEQKGDTNPIPVFSFMGSEEMHPKQISCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH IIME +  S +Y+G I   GPRYCPSIEDKI RF  R+ HQIFLEPEGL 
Sbjct: 245 ITHTNPNTHEIIMEGLDRSPLYTGVIDGVGPRYCPSIEDKIHRFSHRDSHQIFLEPEGLL 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +YPNG+ST+LP +IQ +FI++I GLE   I+RPGYAIEYDY +P+E+  +LETK I 
Sbjct: 305 TNEIYPNGMSTSLPFDIQLRFIQSINGLENAYILRPGYAIEYDYFDPREIKGSLETKSIK 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R  +Y+GV+IDDL +KGV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLIAGLNAARYTRGEEPWYPRRDQAYLGVLIDDLITKGVS 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + ++R + F K  +        L+  
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADYRLTEIGRKLGLVDDQRWETFDKKRENIEREIQRLRDF 484

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSI-------CPDARKFSSL 531
            LTSK +S+  +     K   K  T  + L  P+ S + L ++          +   +  
Sbjct: 485 RLTSKLISNDEVISKFGKPFEKDYTLEDLLKRPNISYEMLMNLNLSGDISAKSSTNLTDK 544

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            IE+++I++ Y  Y  RQ  E       E   IPK  +Y  L  LS E+++KL    P  
Sbjct: 545 EIEQIEIQTKYQGYISRQKEEVDRTLNYENLRIPKGINYDDLVHLSFEVRQKLKEHMPET 604

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G+TPAA++LLLI+IK+
Sbjct: 605 IGQASRISGVTPAAISLLLIHIKR 628


>gi|171462843|ref|YP_001796956.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|238692827|sp|B1XSC4|MNMG_POLNS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|171192381|gb|ACB43342.1| glucose inhibited division protein A [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 640

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/628 (45%), Positives = 394/628 (62%), Gaps = 14/628 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++++DVIV+GGGHAG EAA  +A++G  T LITH    +G+MSCNP+IGG+GKGHLV+E
Sbjct: 3   YSKNFDVIVVGGGHAGTEAALASARMGCDTLLITHSIENLGAMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G M    D AGIQFR+LN  KGPAVR  R Q DR LY+ A++R + +Q NL + Q
Sbjct: 63  IDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQGDRVLYKAAIRRRLENQPNLSLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +  +V Q         VVLT GTFL G IH+G      GR GD  + S
Sbjct: 123 AAVDDLPVKGDEVQGVVTQMGLEFMAKKVVLTAGTFLDGKIHVGLNNYAGGRAGDPAAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-QIE 239
           L     +     GRLKTGTP R+DG TI +    +Q  D   +P FS++     +  Q+ 
Sbjct: 183 LSARLKELKLPQGRLKTGTPPRIDGLTIDFSVMLEQPGDLDPVPVFSYLGRPEQHPKQVP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I+ TN +TH II   +  S +Y+G IK  GPRYCPSIEDKI RF  RN HQIFLEPEG
Sbjct: 243 CWISHTNEKTHDIIRGGLDRSPMYTGVIKGVGPRYCPSIEDKIHRFASRNSHQIFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+  YPNGIST+LP ++Q   +R+I G+E   I+RPGYAIEYD+ +P++L  +LETK 
Sbjct: 303 LTTNEFYPNGISTSLPFDVQWDLVRSIRGMESAVIVRPGYAIEYDFFDPRQLRHSLETKV 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQINGTTGYEEAAAQG++AGIN+   +   +     R++SYIGV++DDL ++G
Sbjct: 363 IGGLYFAGQINGTTGYEEAAAQGMLAGINAGLAAKGKEPWLPKRSESYIGVLVDDLIARG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG  LG + + R   F +  +  +   S L+
Sbjct: 423 VQEPYRMFTSRAEYRLSLREDNADMRLTAIGRDLGLVDDYRWGVFCRKQEAVSRETSRLQ 482

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI---------CPDARK 527
           ++ +  K+ ++  +S   D       +  E L  P  + +++ ++           +   
Sbjct: 483 NIWVGPKSEAAPFVSQLLDQDLSHESSLAELLRRPGVTYESIIALGDGMWAPETLDEDLG 542

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            ++ + ++++I   Y  Y  RQ  E    +  E  L+P+  DYS +  LS E+++KL++ 
Sbjct: 543 LAAQISDQVEISVKYQGYIERQATEIARQEHNETLLLPESLDYSQVIGLSKEVQQKLNLH 602

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           KP  L QA +I G+TPAAL+LLL+++KK
Sbjct: 603 KPETLGQAGRISGVTPAALSLLLVHLKK 630


>gi|153854262|ref|ZP_01995561.1| hypothetical protein DORLON_01555 [Dorea longicatena DSM 13814]
 gi|149753037|gb|EDM62968.1| hypothetical protein DORLON_01555 [Dorea longicatena DSM 13814]
          Length = 636

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/618 (43%), Positives = 383/618 (61%), Gaps = 9/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 14  KYDVVVIGAGHAGCEAALATARLGFQTLVFTVSVDSIAMMPCNPNIGGSSKGHLVRELDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+ +Y   M+R + +QENL++ QGEV
Sbjct: 74  LGGEMGKVIDRTFIQSKMLNKSKGPAVHSLRAQADKAVYSRTMRRVLEAQENLEIKQGEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   I+ +     +   C  V++ +GT+L+     G +    G  G   +N L +
Sbjct: 134 ANLLVEDGKITGVQTFSGATYHCKAVIICSGTYLKARCIYGDVSQYTGPNGLQAANHLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
              +      R KTGTPAR+D KT+ + K E+QF DER++PFSF T  D +   Q  C +
Sbjct: 194 CLKELGIKMYRFKTGTPARVDRKTVDFSKMEEQFGDERVVPFSFTTNPDDVQIDQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++  HQ+FLEPEGL T
Sbjct: 254 TYTNETTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKKRHQVFLEPEGLET 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+S++LPE++Q+   R++PGLE V I+R  YAIEYD I+ ++L P+LE + ISG
Sbjct: 314 DEMYIGGMSSSLPEDVQYAMYRSVPGLEHVKIVRNAYAIEYDCIDARQLKPSLEFRNISG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ NG++GYEEAAAQGL+AGIN+ARK    + +   R+++YIGV+IDDL +K   E
Sbjct: 374 LFSAGQFNGSSGYEEAAAQGLIAGINAARKLQGKESLVLDRSEAYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT  G ++G I + R  R  +  +        LK+  
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADQRLTEKGYEVGLISQERYDRLKEKERLIESEIERLKNAY 493

Query: 483 L-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSIC---PDAR-KFSSLVIER 535
           + TS+ +     S++        +  E +  P+ S + + +I    P+     ++ VIE+
Sbjct: 494 VGTSEKVQELLESYESTPLNSGSSLAELIRRPELSYEAVTAIDVTRPELPKDLAAEVIEQ 553

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ  + ++ K  E + IP+D DY ++ +L  E  +KL   +P ++ QA
Sbjct: 554 VDISLKYDGYIQRQKRQVEQFKKMENKKIPEDMDYDAVNSLRIEAVQKLKEYRPVSIGQA 613

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++PA +++LL+Y+
Sbjct: 614 SRISGVSPADISVLLVYL 631


>gi|150392472|ref|YP_001322521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkaliphilus metalliredigens QYMF]
 gi|166989733|sp|A6TXE4|MNMG_ALKMQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149952334|gb|ABR50862.1| glucose inhibited division protein A [Alkaliphilus metalliredigens
           QYMF]
          Length = 630

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/620 (43%), Positives = 383/620 (61%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAGCEAA  AA++GA T ++T    +I  M CNP+IGG GKGHLVREIDA
Sbjct: 7   TFDVIVVGAGHAGCEAALAAARMGAKTLMLTMTLDSIAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ I ++ NL + Q EV
Sbjct: 67  IGGEMGINTDKTFIQSRMLNTGKGPAVHSLRAQADKNKYHTEMKKTIENEPNLLLKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  +V +  +     +V+L TG +LRG I+IG++   +G  G  PS  L  
Sbjct: 127 VDLIIEDNTVKGVVTRSGASFYSHSVILATGVYLRGKIYIGEVNYESGPNGLFPSMHLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K   +  R KTGTPAR+   ++ + K E+   DE ++PFSFM D I  +Q+ C +TR
Sbjct: 187 KLTKLGCNMRRFKTGTPARIHQDSVDFSKMEEHLGDEEIVPFSFMNDGIEKKQVPCWLTR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR+IMEN+  SA+Y GD++S GPRYCPSIEDK+VRF ++  HQIF+EPEGL+T  
Sbjct: 247 TTGETHRVIMENLNRSAMYRGDMESVGPRYCPSIEDKVVRFSDKPSHQIFIEPEGLDTKE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPEE+Q   ++T+ GLE   I+RP YAIEYD I+P +L PTLE K I  LF
Sbjct: 307 MYVQGMSTSLPEEVQDAMLKTVIGLESAVIMRPAYAIEYDCIDPTQLKPTLEVKHIENLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQ NGT+GYEEAAAQGL+AGIN+  K+   +     R+++YIGV+IDDL +KG  EPY
Sbjct: 367 SGGQFNGTSGYEEAAAQGLMAGINAVLKTKGEEPFVLDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT    K+G   + R +R+           + LK   ++
Sbjct: 427 RMMTSRAEYRLILRQDNADMRLTEKSYKIGLASKERLERYLLKKSHIEEEITRLKKTNVS 486

Query: 485 SKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESS 541
            +  +      K        + Y+ L  P+ + + L  I  +          E+ +I   
Sbjct: 487 PEKANPILEENKSSLIKAGMSLYDLLKRPEVTYKVLKKIDENRNVDIVRDAQEQCEIIIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E +++P++ DY  +  L  E ++KLS ++P ++ QAS+I G+
Sbjct: 547 YEGYIEKQLRQIDQFKKLENKILPQEIDYHGIDGLRLEARQKLSDIQPMSVGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           +P+ +++L+IY+++   + N
Sbjct: 607 SPSDISVLMIYLEQRRRQKN 626


>gi|319891294|ref|YP_004148169.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317160990|gb|ADV04533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 624

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/624 (44%), Positives = 398/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +S+DVIV+G GH+G EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVKSFDVIVVGAGHSGIEAGLASARRGAHTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  ++NL+V+Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEDEDNLEVMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   +  +     +  R   V+LTTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDGEVKGVRTNIGTEYRAKAVILTTGTFLRGEIILGNLKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADHLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYDTTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPEE+Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEEVQRQMLATIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A +    +     R+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAARVLGKEETILRRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I + R +RF    Q+     + L+ +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYERFNTKRQQITDEMARLEQI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A E L  P+ + + +  I  + R+  + V E++
Sbjct: 481 RVKPSERVQQIIEEKGGSRLKDGI--LAKELLRRPEMTYETIIEILEEERQLPADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + +  ++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYITKSLQQVDKVKRMEQKKIPEDLDYSQIDSLATEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKIQR 622


>gi|239813064|ref|YP_002941974.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Variovorax paradoxus S110]
 gi|259495856|sp|C5CW10|MNMG_VARPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|239799641|gb|ACS16708.1| glucose inhibited division protein A [Variovorax paradoxus S110]
          Length = 652

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/634 (47%), Positives = 394/634 (62%), Gaps = 14/634 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPEEFDVIVVGGGHAGTEAALAAARMGAKTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + 
Sbjct: 62  EVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRHRLENQPNLSLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIAFRARTVVLTAGTFLDGRIHVGLDNYQAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE------RLIPFSFMTD-KI 233
           SL     +     GRLKTGTP RLDG++I + K  +Q  D        +  FSFM    +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRLDGRSIDFSKCTEQAGDGMPGGAGPMPVFSFMGRADM 241

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +Q+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF ++  HQI
Sbjct: 242 HPQQMPCWITHTNARTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFADKESHQI 301

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL T+  YPNGIST+LP +IQ+Q +R++PGLE  +I+RPGYAIEYDY +P+EL  
Sbjct: 302 FLEPEGLTTNEYYPNGISTSLPFDIQYQLVRSMPGLENAHILRPGYAIEYDYFDPRELKS 361

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + ET+ I GLF AGQINGTTGYEEAAAQGL AGIN+A +    +     R ++Y+GV++D
Sbjct: 362 SFETRSIKGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEEAWLPRRDEAYLGVLVD 421

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G KLG + + R   F++     + 
Sbjct: 422 DLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRKLGLVDDARWDAFSRKRDTVSR 481

Query: 474 LRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----AR 526
               LKS+ +  +NL    S  +  K         + L  PD + + L S+         
Sbjct: 482 ETERLKSIWVNPRNLPAAESERVLGKAIEHEYNLADLLRRPDVNYETLMSLDGGKYSAGS 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             S + IE+++I + Y+ Y  RQ  E +     E   +P DFDYS + ALS E+++KL  
Sbjct: 542 PLSEIEIEQIEISAKYSGYIERQHDEVERAAHFENLRLPADFDYSQVKALSFEVRQKLDK 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            +P  L  AS+I G+TPAA++LL+I+++K   K 
Sbjct: 602 HRPETLGLASRISGVTPAAISLLMIHLRKGGHKA 635


>gi|188588132|ref|YP_001922716.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188498413|gb|ACD51549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 626

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/616 (44%), Positives = 396/616 (64%), Gaps = 3/616 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G GHAGCEAA  +A++G +T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 11  DVVVVGAGHAGCEAALASARMGLNTLICTINLDSIAMMPCNPNIGGTAKGHLVREIDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+R +  QENL + Q EV  
Sbjct: 71  GEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKDYQFRMKRVLEEQENLQIRQIEVTE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E N ++ I+ ++ ++ R   V+L TGT+L+G I IG++    G  G  P+N L  S 
Sbjct: 131 LLVEGNKVTGIITRNGAIFRAKAVILATGTYLKGKIIIGEVSYSGGPNGLFPANDLSQSL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +       R KTGTPAR++ +++ + K  +Q  D++++PFSFM+  I   QI C +T TN
Sbjct: 191 LDLGISLRRFKTGTPARINRRSVDFSKMIEQPGDDKIVPFSFMSKNIDKEQISCYLTYTN 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I +NI  S IY+G IK  GPRYCPSIEDK++RF ++  HQIF+EPEGL+T  +Y
Sbjct: 251 EQTHNVIKDNIGRSPIYNGSIKGVGPRYCPSIEDKVMRFPDKLQHQIFVEPEGLDTLEMY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G+S++LPEE+Q + +RT+PGLE V I+R  YAIEYD ++P EL PTLE K + GL+ A
Sbjct: 311 VGGMSSSLPEEVQLKMMRTLPGLENVEIMRTAYAIEYDSVDPTELEPTLEFKNVEGLYGA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ NG++GYEEA AQGLVAGIN+A K    + +  +R+D+YIGV+IDDL +KG  EPYRM
Sbjct: 371 GQFNGSSGYEEAGAQGLVAGINAALKIKGEEPMILTRSDAYIGVLIDDLVTKGTNEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            TSRAEYR+ LR DNAD RLT IG K+G +   R + F             LK L +T+K
Sbjct: 431 MTSRAEYRLILRQDNADFRLTEIGKKVGLVTAERYETFLNRKNTIENELERLKKLQITNK 490

Query: 487 NLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
             ++    ++   +  K  + YE +  P+    +L ++  +  + S  + E++ I + Y 
Sbjct: 491 RETNEFLLAVGSAELKKPISFYELIKRPEVDYFSLKNLDTEREELSEDIGEQINIIAKYE 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y   Q+ +  + +  EK+L+PKD DYS++  L  E ++KL+ +KP ++ QAS+I G++P
Sbjct: 551 GYISNQLEQVAQFRKFEKKLLPKDIDYSNVKGLRTEAEQKLNSIKPISIGQASRISGVSP 610

Query: 604 AALNLLLIYIKKNTVK 619
           A +++LLIY++    K
Sbjct: 611 ADISVLLIYLEHYYNK 626


>gi|71065797|ref|YP_264524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter arcticus 273-4]
 gi|123648515|sp|Q4FSB8|MNMG_PSYA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71038782|gb|AAZ19090.1| putative glucose inhibited division protein A [Psychrobacter
           arcticus 273-4]
          Length = 632

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/621 (47%), Positives = 393/621 (63%), Gaps = 9/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KNYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E    +++V     +    TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 125 ADDILVENGRATAVVTATGIIFNTQTVVLTSGTFLGGVIHIGLESSKGGRAGDQPSIKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTPAR+D +++ +     Q  D  L   S+M D  +   Q+ C I
Sbjct: 185 DRLRELKLPVGRLKTGTPARIDARSVDFSVMAVQPGDTPLPVMSYMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 245 THTNARTHDIIRENLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDR 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSA---RKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG N+A    ++++ D     R ++Y+GV++DDL + G
Sbjct: 365 LYFAGQINGTTGYEEAGVQGLLAGTNAALVTCENSEFDVWTPRRDEAYLGVLVDDLITHG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++      S LK
Sbjct: 425 TTEPYRMFTSRAEYRLLLREDNADQRLTETGRKLGLVDDVRWQAYEEKMEAIASETSRLK 484

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +  T  N      T+ + +   K  TAY+ L  P     ++ +I     +  S V E++
Sbjct: 485 DIWATPINALGAQVTAQTGEVLSKESTAYDLLKRPQIHFNDIAAITG--SEVDSQVGEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDYS +  LSNE+ +KL+ ++P  L QA 
Sbjct: 543 EISVKYAGYIDRQQEDIDQMKRLENTALPMDFDYSVVSGLSNEIVQKLAQVRPSTLAQAG 602

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+TPAA+ LL + +KK  
Sbjct: 603 RISGVTPAAIQLLAMTVKKQK 623


>gi|295108621|emb|CBL22574.1| glucose-inhibited division protein A [Ruminococcus obeum A2-162]
          Length = 629

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/624 (41%), Positives = 379/624 (60%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++ D++V+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLV+E
Sbjct: 6   LEKTCDIVVVGAGHAGCEAALAGARLGLDTVMFTVSVDSIALMPCNPNVGGSSKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +QENL + Q
Sbjct: 66  LDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKQAYSTEMRKTLENQENLTIKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   I+ + +   ++  C  VVL TGT+L+     G +    G  G   +N 
Sbjct: 126 GEVTELLVEDGKITGVKLYSGAIYHCQAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANY 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S      +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +   Q  
Sbjct: 186 LTDSLKSLGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTDPESVQIPQKS 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 246 CWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q     ++PGLE   I++  YAIEYD INP++L+PTLE KK
Sbjct: 306 LYTNEMYIGGMSSSLPEDVQDAMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKK 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K 
Sbjct: 366 IKGLFSGGQFNGSSGYEEAAAQGLIAGINAAMEIKGQEQLVLDRSEAYIGVLIDDLVTKE 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL   G + G I E   +   +  +         +
Sbjct: 426 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYQAGLIDEETYQAVLRKEEAIQKEIDRTE 485

Query: 480 SLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +       K L     +  + G   T  E +  P+ + ++L  I P+  +    V +
Sbjct: 486 HATIGGTPQVQKLLEEKGSTLLKSGT--TIAELIRRPELNYEDLAPIDPERPELPWDVKQ 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y  RQ+ + ++ K  E + IP+D DY  + +L  E ++KL + +P ++ Q
Sbjct: 544 QVEINLKYEGYIKRQLKQVEQFKKLEAKKIPEDLDYEKVGSLRIEARQKLELYRPISIGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G++PA +++LL+Y+++   
Sbjct: 604 ASRISGVSPADISVLLVYLEQYRR 627


>gi|53802710|ref|YP_112542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylococcus capsulatus str. Bath]
 gi|81170556|sp|Q60CS5|MNMG_METCA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53756471|gb|AAU90762.1| glucose inhibited division protein A [Methylococcus capsulatus str.
           Bath]
          Length = 625

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 390/619 (63%), Gaps = 5/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA+ GA T L+T    T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   FDDEFDVIVVGGGHAGTEAALAAARTGARTLLLTQNVETLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLM R AD AGIQFR+LN  KGPAVR  R QADR LYR A++  + +QENL + Q
Sbjct: 63  IDAMGGLMARAADRAGIQFRILNASKGPAVRATRAQADRSLYRKAVREGLSAQENLSLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + +V Q     R   VVLT GTFL G IHIG      GR GD P+  
Sbjct: 123 QTVVDLIVEGRRAAGVVTQMGLKFRSRCVVLTVGTFLAGRIHIGLENYDGGRAGDPPATD 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L        F   RLKTGTP R+D +++ + +  +Q  D+    FSF+ T +    Q+ C
Sbjct: 183 LARRLRDLGFKVARLKTGTPPRIDRRSVDFSRMAEQPGDDPTPVFSFLGTREEHPPQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRTN  TH +I   +  S +++G I+  GPRYCPSIEDK+VRF ER+ HQIF+EPEGL
Sbjct: 243 YITRTNERTHELIRAGLDRSPMFTGVIEGIGPRYCPSIEDKVVRFAERDSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LP ++Q   +R+I G E   I RPGYAIEYD+ +P++L  +LET+ +
Sbjct: 303 DSLEIYPNGISTSLPFDVQLAVVRSIQGFEDARITRPGYAIEYDFFDPRDLRHSLETRHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+ARK+  L+     R ++Y+GV++DDL ++G 
Sbjct: 363 ENLFFAGQINGTTGYEEAAAQGLLAGLNAARKARDLEPWWPGRDEAYLGVLVDDLITRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G  LG + + R   F    +    L + L +
Sbjct: 423 SEPYRMFTSRAEYRLVLREDNADLRLTETGRALGLVDDARWSAFEAKREAIETLGARLAA 482

Query: 481 LVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERL 536
             +   +  + S   ++     +  +  E L  PD  ++++    PD        V E++
Sbjct: 483 RRIRPDSSQAESWNALTEIPLQREASLLELLRRPDVGLEHIAGHAPDLFEGMDRAVREQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y  Y  RQ  E + ++  E   +P   DY  +  LS+E++EKL  ++P  + QA+
Sbjct: 543 EIAAKYTGYIERQQAEIERVRRYEAWQLPDSMDYGKVIGLSSEVREKLGRVRPATVGQAA 602

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TPAA++LLL+++++
Sbjct: 603 RIPGITPAAISLLLVHLRR 621


>gi|292493915|ref|YP_003529354.1| glucose inhibited division protein A [Nitrosococcus halophilus Nc4]
 gi|291582510|gb|ADE16967.1| glucose inhibited division protein A [Nitrosococcus halophilus Nc4]
          Length = 629

 Score =  782 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/618 (46%), Positives = 389/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIVVGGGHAGTEAALAAARQGARTLLLTHNLETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM + AD AGI FRVLN +KGPAVR  R QADR LY+  +++ +  Q +L + Q  V
Sbjct: 66  LGGLMAQAADRAGIHFRVLNARKGPAVRATRAQADRALYKAVVRKSLEQQPHLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   +  +  Q         V+LT GTFL G IH+G      GR GD P+N+L  
Sbjct: 126 ADLLVEGERVIGVKTQLGLTFYAPAVILTVGTFLGGRIHVGLTHHEGGRAGDPPANALAC 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+     +  Q+ C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDKPVPVFSFLGSAQDHPSQVHCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II  N+  S +YSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTTPQTHEIIHANLDRSPMYSGEIEGMGPRYCPSIEDKVVRFSDKESHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q   +R+IPG E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EVYPNGISTSLPFDVQEALVRSIPGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEA AQGL+AG+N+  +       C  R ++Y+GV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAGAQGLIAGLNAGLQIRDQAPWCPRRDEAYVGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTP G  LG + E R ++F    +        L    +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPKGQALGVVDETRWRQFNAKWEAIERENQRLSQQRI 485

Query: 484 TSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +    +T++  +   +     E L  P  S + L  +  +      +V E++ I++
Sbjct: 486 GPDQVAQEEATTLLGEPLRREYRLIELLRRPQISYEKLMRLIGEPVAVDLVVAEQIAIQA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   +P D +Y  +  LS E++EKL+ ++P  L QA++I G
Sbjct: 546 KYAGYIERQQQEINRQQRHEGLRLPLDLNYHQVKGLSAEVQEKLARVRPATLGQAARIPG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLL+Y+K+  V
Sbjct: 606 VTPAAVSLLLVYLKRARV 623


>gi|37785809|gb|AAR02616.1| GidA [Aeromonas hydrophila]
          Length = 629

 Score =  782 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/622 (44%), Positives = 393/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YHEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q
Sbjct: 63  VDALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +
Sbjct: 123 QACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +      RLKTGTP R+D +++ +   + Q  D+    FSF+ +   + RQ+ C
Sbjct: 183 LAQRLRELPLRIDRLKTGTPPRIDARSVDFSVMQAQHGDDPRPVFSFIGNASQHPRQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YVTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I
Sbjct: 303 TTHELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R  +YIGVM+DDL++ G 
Sbjct: 363 GNLFFAGQINGTTGYEEAAAQGLLAGLNAALRAQGKDPWHPRRDQAYIGVMMDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S
Sbjct: 423 REPYRMFTSRAEYRLLLREDNADLRLTAIGRELGLVDDERWSKFNAKMEQVEQERQRMRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
             +  ++ S  +++        + ++  E L  P+ +   L +I       S     +++
Sbjct: 483 TWIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMAIEGVGPALSDSAAADQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  + QAS
Sbjct: 543 EIQIKYAGYIERQHDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPQTIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK+ +
Sbjct: 603 RISGITPAAISILLVHLKKHGL 624


>gi|323465553|gb|ADX77706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus pseudintermedius ED99]
          Length = 624

 Score =  782 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/624 (44%), Positives = 398/624 (63%), Gaps = 7/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +S+DVIV+G GH+G EA   +A+ GA T ++T     I  M CNP++GG  KG +VRE
Sbjct: 1   MVKSFDVIVVGAGHSGIEAGLASARRGAHTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  ++NL+V+Q
Sbjct: 61  IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRILEGEDNLEVMQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   +  +     +  R   V+LTTGTFLRG I +G LK  +G     PS +
Sbjct: 121 GMVDELIIEDGEVKGVRTNIGTEYRAKAVILTTGTFLRGEIILGNLKYSSGPNHQLPSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  F+  R KTGTP R++ KTI + KTE Q  D+    FS+ T +    Q+ C 
Sbjct: 181 LADHLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPGDDVGRAFSYDTTEYILDQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +N+  SA+YSG IK  GPRYCPSIEDK VRF ++  HQ+FLEPEG N
Sbjct: 241 LTYTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPEE+Q Q + TIPGLEK +++R GYAIEYD + P +L+PTLETK I 
Sbjct: 301 TNEVYVQGLSTSLPEEVQRQMLATIPGLEKADMMRAGYAIEYDALVPTQLWPTLETKMIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A +    +     R+D+YIGV+IDDL +KG  
Sbjct: 361 NLYTAGQINGTSGYEEAAGQGLMAGINAAARVLGKEETILRRSDAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G +LG I + R +RF    Q+     + L+ +
Sbjct: 421 EPYRLLTSRAEYRLLLRHDNADLRLTDLGHELGLISDERYERFNTKRQQITDEMARLEQI 480

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         +     S  +DG    A E L  P+ + + +  I  + R+  + V E++
Sbjct: 481 RVKPSERVQQIIEEKGGSRLKDGI--LAKELLRRPEMTYETIIEILEEERQLPADVEEQV 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ Y  Y  + + +  ++K  E++ IP+D DYS + +L+ E +EKL+ +KP N+ QAS
Sbjct: 539 EIQTKYEGYITKSLQQVDKVKRMEQKKIPEDLDYSQIDSLATEAREKLAEVKPLNIAQAS 598

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA +++LL+Y+++  ++ 
Sbjct: 599 RISGVNPADISILLVYLEQGKIQR 622


>gi|163869378|ref|YP_001610634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella tribocorum CIP 105476]
 gi|189039329|sp|A9IZX9|MNMG_BART1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161019081|emb|CAK02639.1| glucose inhibited division protein A [Bartonella tribocorum CIP
           105476]
          Length = 622

 Score =  782 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/619 (55%), Positives = 451/619 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVI++GGGHAGCEAA+ +A++GA TAL+THK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIIVGGGHAGCEAASASARVGAQTALLTHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  QENL +++ E
Sbjct: 62  ALDGLMGRAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKEAIQKFLKEQENLTLVEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S ++++    I    VVLTTGTFL G IHIG     AGRMGD  S  L 
Sbjct: 122 VIDLIVKDHCVSGVILKKQGTIFSGAVVLTTGTFLNGFIHIGDKTWAAGRMGDPASVQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD+  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYHIKLGRLKTGTPARLSKKTIDWDRLSKQQADENPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II +NI  SA+YSG+I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNAQTHQIIRDNIHRSALYSGNIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LPE++Q  F++TI GLE   +++PGYAIEYD++NP++L  +LE + + GL
Sbjct: 302 TVYPNGLSTSLPEDVQISFLKTIEGLENATVLQPGYAIEYDFVNPQQLTKSLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK  KLD I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGKLDEIFISRSTAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + K  Q  +  RS+ K+L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADTRLTPLAQEWGIVSKVRWDCYQKKQQRLDQARSICKNLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+FL+YP  +++ L    P  +   S  +E L+IE+ YA
Sbjct: 482 TPNEASAHGLHVNHDGIRRSAYDFLAYPHMTLERLSHFWPQLQAIDSKTVESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  +   ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLDKQAQDIASLQRDERLEIPSSLDIQAISGLSNELKSKIQEVSPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNE 622
           AAL+L++ YI++   +  +
Sbjct: 602 AALSLIITYIQRQRREKAK 620


>gi|304392708|ref|ZP_07374648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ahrensia sp. R2A130]
 gi|303295338|gb|EFL89698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ahrensia sp. R2A130]
          Length = 625

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/622 (55%), Positives = 450/622 (72%), Gaps = 3/622 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +S+DV+VIGGGHAG EAA+ +A++GA TAL+T     IG+MSCNPAIGGLGKGHLVREI
Sbjct: 4   EKSFDVVVIGGGHAGTEAASASARMGAKTALVTLSADGIGTMSCNPAIGGLGKGHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDGLMGRVADA+GIQFR+LN +KGPAVRGPRTQ+DR+LY++AM  E  SQ NL +I+G
Sbjct: 64  DALDGLMGRVADASGIQFRMLNRRKGPAVRGPRTQSDRKLYKIAMADETASQNNLAIIEG 123

Query: 123 EVAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           EV          +S + + D + IRC  VVLTTGTFL G+IHIG+  +PAGRMG+ PS +
Sbjct: 124 EVIDIVPYSDGRVSGVQLADGTFIRCGAVVLTTGTFLNGLIHIGEKTVPAGRMGEKPSIA 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L N     +   GRLKTGTPARLDG+TI W   E Q AD+  +PFS +TD+I   Q+ CG
Sbjct: 184 LANRLRSLELPLGRLKTGTPARLDGRTIDWASLEMQEADDPPVPFSTLTDRIIVPQVACG 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH II +N+  SA+YSG I   GPRYCPS+EDKIV+FGER+GHQIFLEPEGL+
Sbjct: 244 ITRTTPATHAIIRDNVHRSAMYSGQIGGVGPRYCPSVEDKIVKFGERDGHQIFLEPEGLD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q +FI TIPGLE+  I++PGYAIEYDY++P+ L P+LE + + 
Sbjct: 304 DHTVYPNGISTSLPEEVQSEFIATIPGLEQAKILQPGYAIEYDYVDPRALRPSLEIRAMQ 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+AR+   ++ + FSR++SYIGVM+DDL ++GV 
Sbjct: 364 GLYLAGQINGTTGYEEAGAQGLVAGLNAARQVAGMEPVHFSRSESYIGVMLDDLVTRGVS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP  ++LG     RQ  F   + E +  R+L  S+
Sbjct: 424 EPYRMFTSRAEYRLSLRADNADQRLTPKAIELGICSATRQATFTSKLTELDAARNLCGSV 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT    ++  +   QDG  R A + L+Y + S++ L +I P+       + E+++IE+ 
Sbjct: 484 SLTPSEATAHGLKITQDGVRRDATDLLAYSEVSMEILSNIWPELASLDPAIAEQVEIEAG 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   +  +E   IP  FD++++  +SNE + KL  ++P ++ QAS+I+GM
Sbjct: 544 YAVYMARQKRDIDAVLRDEALSIPDQFDFAAIGGMSNEARSKLVSVRPSSIGQASRIDGM 603

Query: 602 TPAALNLLLIYIKK--NTVKLN 621
           TPAA  LLL  +++     K++
Sbjct: 604 TPAATTLLLAAVRRFEQARKVS 625


>gi|254369131|ref|ZP_04985143.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122081|gb|EDO66221.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 627

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/621 (48%), Positives = 399/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       RQI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           S++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNAIIENISMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|329894823|ref|ZP_08270623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC3088]
 gi|328922717|gb|EGG30051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC3088]
          Length = 630

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/618 (46%), Positives = 392/618 (63%), Gaps = 5/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EAA  +A++G +T LITH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   QTFDVIVIGGGHAGTEAALASARMGCATLLITHSVDTLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KGPAVR  R QADR LY+ A+++ +  Q NL + Q  
Sbjct: 65  ALGGAMAEATDEAGIQFRVLNSRKGPAVRATRAQADRVLYKAAIRKRLEQQSNLWIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +  ++ Q     +   VVLT GTFL G IHIG  +   GR GD  + +L 
Sbjct: 125 VDDLIIKGDRVEGVITQMGLRFKAPAVVLTAGTFLAGKIHIGLEQSQGGRAGDPAAMTLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
                 +    RLKTGTP R+D +T+ +   ++Q+ D      S M    T+  Q+ C I
Sbjct: 185 ARLRDLNLRVDRLKTGTPPRIDARTVDFSVMQEQWGDTPEPVMSLMGSAATHPKQMCCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S ++SG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T
Sbjct: 245 THTNAQTHEIISQNLDRSPLFSGVIEGTGPRYCPSIEDKIHRFADKDSHQVFVEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP ++Q+  +R+I G E  +I+RPGYAIEYD+ +P+ L  TLETK I G
Sbjct: 305 NELYPNGISTSLPFDVQYAVVRSIKGFENAHIVRPGYAIEYDFFDPRGLKHTLETKAIDG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEA AQGL+AG+N+  +         +R ++YIGVMIDDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAGAQGLIAGLNAGLRVKGKPAWYPTRKEAYIGVMIDDLVTHGTAE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R + ++  +++       L S  
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTAIGRQLGLVNDLRWQDYSTKMEQLAAEHERLASTY 484

Query: 483 L---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   T +      IS K   +  +  + L  P+    ++  +   A +    V ++++IE
Sbjct: 485 IQAKTPQAEKVEQISGKPLTREYSLLDLLKRPELHYHDIADLKGAACE-RLDVAQQVEIE 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           S YA Y  RQ  E + +  + +  IP DFDY S+  LSNEL+ KL  + P  L QA +I 
Sbjct: 544 SKYAGYIARQEQEIQRMAGQAETQIPSDFDYQSVSGLSNELRSKLEDVNPLTLDQAGRIA 603

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAAL+LL IY+KK+ 
Sbjct: 604 GMTPAALSLLAIYLKKHR 621


>gi|227823855|ref|YP_002827828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium fredii NGR234]
 gi|227342857|gb|ACP27075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium fredii NGR234]
          Length = 627

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/614 (62%), Positives = 473/614 (77%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIGGGHAGCEAA+ AA+LGA TALITHK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   SYDVIVIGGGHAGCEAASAAARLGARTALITHKKETIGVMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LYR AMQREI + ENL VI+G+ 
Sbjct: 63  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRRLYREAMQREIDAIENLLVIEGDA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   ++ ++M++  + R + VVLTTGTFL+G+IHIG  KIPAGR+G+ PS  L  
Sbjct: 123 FDLLTEGETVAGVIMKNGQVFRAAAVVLTTGTFLKGLIHIGDRKIPAGRVGEEPSVGLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +F    GRLKTGTPARLDG+TI WD+  +Q  DE  +PFSFMTD I NRQI+CG+TR
Sbjct: 183 TLARFGLKLGRLKTGTPARLDGRTIHWDRVGRQGPDEEPVPFSFMTDTIVNRQIDCGVTR 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH++I +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 243 TTDATHKLIADNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q  FIRT+PGLE V+I++PGYAIEYD+++P+EL  +L  +K  GL+
Sbjct: 303 IYPNGISTSLPEEVQEAFIRTVPGLESVSILQPGYAIEYDHVDPRELQLSLAVRKSPGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+A  +   +   FSRTDSYIGVMIDDLTS+G+ EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLVAGLNAALAAMGREPFVFSRTDSYIGVMIDDLTSRGITEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP G++LGC+GE R+ RF  + + Y+   +LLKSL +T
Sbjct: 423 RMFTSRAEYRLSLRADNADMRLTPTGIELGCVGEARRTRFGSWKRAYDDGHTLLKSLSIT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   +   +DG+ RTA++ L+YPD +I+ L  + P        V E LQI+++YA 
Sbjct: 483 PNEGARYGLKLNRDGQRRTAFDLLAYPDQTIEGLRPLWPQLDAIDPRVSEALQIDAAYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   I+ EE   IP DFDYS LP LSNELK+KL+  +P NL QA K++GMTPA
Sbjct: 543 YMERQAADIAGIRREESAAIPDDFDYSVLPGLSNELKQKLAQQRPRNLAQAMKVDGMTPA 602

Query: 605 ALNLLLIYIKKNTV 618
           A++LLL ++++   
Sbjct: 603 AVSLLLSWLRRQER 616


>gi|326797439|ref|YP_004315259.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinomonas mediterranea MMB-1]
 gi|326548203|gb|ADZ93423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinomonas mediterranea MMB-1]
          Length = 629

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 390/619 (63%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ GA T L++H   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARTGAKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG M    D  GIQFR LN +KGPAVR  R QADR LY+ A+++++ +QENL + Q    
Sbjct: 67  DGAMALATDQGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRQQLENQENLWLFQQSCE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+     +V Q        TVVLT GTFL G+IH+G      GR GD PS  L   
Sbjct: 127 DLIVEEGAARGMVTQTGIRFLSKTVVLTAGTFLGGIIHVGLQNHSGGRAGDPPSIGLAEK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
                F   RLKTGTP R+D +++ +   + Q  D+     S+M +  +  RQI C IT 
Sbjct: 187 LRALPFRVDRLKTGTPPRIDARSVDFSVMQAQPGDDVTPVMSYMGNSAMHPRQINCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  
Sbjct: 247 TNEQTHDIIRSGMDRSPMYTGVIEGVGPRYCPSIEDKIVRFADKNSHQIFIEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R++ GLE  +I RPGYAIEYDY NP++L  +LETK + GLF
Sbjct: 307 LYPNGISTSLPFDVQLELVRSMKGLENAHITRPGYAIEYDYFNPQDLKYSLETKHMPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+A +S   D     R ++Y+GV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGLNAALQSQDKDAWTPRRDEAYLGVLVDDLITMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F +  +        +KS  + 
Sbjct: 427 RMFTSRAEYRLVLREDNADMRLTEKGRELGVVSDERWAAFCEKRESIERETQRMKSSWIV 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
                S +I+ K      +     + L  P     ++ ++   P+  K    V E++QI 
Sbjct: 487 PNTPESEAINPKLETPISREYNLLDLLKRPGIEYSDVANLKNAPE-EKIDIRVAEQVQIS 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + + ++ +E   +P+D DYS +  LSNE+K+KL   KP  L  AS+I+
Sbjct: 546 VKYEGYISRQADDIERLRRQENTALPEDLDYSGIDGLSNEVKQKLIDAKPQTLAAASRIQ 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LLL+++KK ++
Sbjct: 606 GITPAAISLLLVHLKKRSI 624


>gi|89256126|ref|YP_513488.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica LVS]
 gi|115314600|ref|YP_763323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica OSU18]
 gi|156502147|ref|YP_001428212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009829|ref|ZP_02274760.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931542|ref|YP_001891526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254367451|ref|ZP_04983477.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|122325376|sp|Q0BMJ8|MNMG_FRATO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122500919|sp|Q2A464|MNMG_FRATH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222933|sp|A7NBA3|MNMG_FRATF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89143957|emb|CAJ79178.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129499|gb|ABI82686.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253267|gb|EBA52361.1| glucose inhibited division protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156252750|gb|ABU61256.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|187712451|gb|ACD30748.1| glucose inhibited division protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 627

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/621 (48%), Positives = 399/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       RQI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNAIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|331092105|ref|ZP_08340936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402306|gb|EGG81877.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 632

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/616 (42%), Positives = 376/616 (61%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG GHAGCEA    A+LG  T + T   +++  M CNP IGG  KGHLVREIDA
Sbjct: 14  EYDVVVIGAGHAGCEAGLATARLGLKTIVFTVSINSVALMPCNPNIGGTSKGHLVREIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL++ Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKAQYSKTMRCVLENQENLELKQAEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +     ++  C  V+L TGT+L+     G++    G  G   +N L +
Sbjct: 134 TDILVEDGKITGVQTYSGAVYHCKAVILCTGTYLKSRCIYGEISNETGPDGLQAANYLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           S  +   +  R KTGTPAR+D  +I + K E+QF DER++PFSF T  + +   Q  C +
Sbjct: 194 SLKRLGIEMYRFKTGTPARIDKNSIDFSKMEEQFGDERVVPFSFTTNPEDVQIEQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL+T
Sbjct: 254 TYTNEKTHEIIRQNLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGLDT 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q++  R++PGLE   I+R  YAIEYD I+ ++L+PTLE KKI G
Sbjct: 314 NEMYIGGMSSSLPEDVQYEMYRSVPGLENARIMRNAYAIEYDCIDARQLYPTLEFKKIEG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+  GQ NG++GYEEAAAQGL+AGIN+A K    + I   R++ YIGV+IDDL +K   E
Sbjct: 374 LYSGGQFNGSSGYEEAAAQGLIAGINAALKLLGREQIVIDRSEGYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT IG K+G I   R     +  ++       +K   
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADQRLTEIGYKVGLISNDRYSHLKEKERQIEQEVERVKHTN 493

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           + +       +            T  E +  P+ + + L  I     K S  VIE++ I 
Sbjct: 494 IGANGKVQEVLEKYGSTPLNSGTTLAELIRRPELNYEALAPIDVKREKLSDEVIEQVNIS 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + ++ K  E + IP + DY  + +L  E  +KL   +P ++ QAS+I 
Sbjct: 554 IKYEGYITRQMKQVEQFKKLETKRIPDEIDYDDVKSLRIEAVQKLKQYRPISIGQASRIS 613

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++LL+Y+++
Sbjct: 614 GVSPADISVLLVYMEQ 629


>gi|220930843|ref|YP_002507752.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium cellulolyticum H10]
 gi|220001171|gb|ACL77772.1| glucose inhibited division protein A [Clostridium cellulolyticum
           H10]
          Length = 627

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/622 (45%), Positives = 395/622 (63%), Gaps = 6/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD++V+GGGHAGCEAA  AA+LG ST + +    +I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   NYDIVVVGGGHAGCEAALAAARLGCSTIIFSINLDSIANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  +  QENLD+ Q EV
Sbjct: 67  LGGQMGKATDKTFIQSKILNSSKGPAVYSLRAQVDRRQYQMEMKNILEKQENLDIRQSEV 126

Query: 125 AGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               T+  K  ++ +     ++  C  VVLTTGT+L+G I IG +    G  G  P+N L
Sbjct: 127 VEILTDENKTKVTGVKTHTGAIFHCKAVVLTTGTYLKGRIFIGDVNYSGGPDGLFPANKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S      +  R KTGTPARL+ +++ + K  +Q  D+ ++PFSF T+KI   Q+ C +
Sbjct: 187 SESLQNLGLNLIRFKTGTPARLNRQSLNFSKMSEQPGDDVIVPFSFETEKIDKEQVSCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN ETH +I  NI  S +YSG+I   GPRYCPSIEDK+VRF ++  HQ+F+EP GL T
Sbjct: 247 TYTNQETHEVIKRNIHKSPLYSGNITGVGPRYCPSIEDKVVRFSDKEHHQVFVEPMGLET 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q +F+RTIPGLE V ++R  YAIEYD I+  +L  +LE K ++G
Sbjct: 307 EEMYLQGMSSSLPEDVQIEFMRTIPGLENVKVMRSAYAIEYDGIDATQLKLSLEYKDVAG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQING++GYEEAAAQG+VAGIN+  K    + + F R+ +YIGV+IDDL +KG  E
Sbjct: 367 LFSAGQINGSSGYEEAAAQGIVAGINAVMKIKNREPLVFDRSQAYIGVLIDDLVTKGTKE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLTPIG ++G I E R KRF +  +        LK   
Sbjct: 427 PYRMMTSRAEYRLLLRQDNADLRLTPIGREIGLISEERYKRFLEKKEMIEKEIERLKKTY 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L       + +  +     ++  +    L  P+ S ++L  IC +       V E++++ 
Sbjct: 487 LPPSEKVQSYLENRNSTAIKSGIQVTELLRRPEISYESLSEIC-ELPDLPRAVREQVEVA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + ++ K  E R +P D DY+ +  L  E ++KLS +KP ++ QAS+I 
Sbjct: 546 VKYEGYIKRQMQQVEQYKKLEGRKLPHDIDYNEIQGLRLEARQKLSQIKPDSIGQASRIT 605

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G++PA +++LLIY+++   K +
Sbjct: 606 GVSPADISVLLIYLEQVKRKRD 627


>gi|253581094|ref|ZP_04858354.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847630|gb|EES75600.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 634

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/615 (41%), Positives = 371/615 (60%), Gaps = 5/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD++V+G GHAGCEAA   A+LG +T + T    +I  M CNP +GG  KGHLVRE+D
Sbjct: 16  EDYDIVVVGAGHAGCEAALAGARLGLNTVMFTVSVDSIALMPCNPNVGGSSKGHLVRELD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + QGE
Sbjct: 76  ALGGEMGKNIDKTFIQSKMLNCSKGPAVHSLRAQADKQAYSNEMRKTLENTPNLTIKQGE 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   I+ +     +   C  VVL TGT+L+     G +    G  G   +N L 
Sbjct: 136 VTKLLVEDGKITGVKTYSGATYNCKAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANYLT 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           +S  +   +  R KTGTPAR+ G TI + K E+QF DER++PFSF T  + +   Q  C 
Sbjct: 196 DSLKELGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTNPEDVQIEQKSCW 255

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEGL 
Sbjct: 256 LTYTNEKTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEGLY 315

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LPE++Q +   ++PGLE   I++  YAIEYD INP++L+PTLE KKI 
Sbjct: 316 TNEMYIGGMSSSLPEDVQEEMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKKIK 375

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K   
Sbjct: 376 GLFSGGQFNGSSGYEEAAAQGLIAGINAALEVKGQEQLILDRSEAYIGVLIDDLVTKENH 435

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RL   G + G I E   ++     ++     S ++  
Sbjct: 436 EPYRMMTSRAEYRLLLRQDNADLRLRKKGYQAGLISEEDYQKILTKEEQIKTEISRVEHT 495

Query: 482 VLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            + +     T +   +        T  E +  P+ S + +  +  +  +    V E++ I
Sbjct: 496 NIGANKEVQTLLESYNSTPLKSGTTLAELIRRPELSYEAIKPLDKERPELPWDVQEQVDI 555

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ+ + ++ K  E + IP D DY  + +L  E ++KL   +P ++ QAS+I
Sbjct: 556 NIKYDGYIRRQLKQVEQFKKLEAKKIPTDLDYEKVGSLRIEARQKLEAYRPISIGQASRI 615

Query: 599 EGMTPAALNLLLIYI 613
            G++PA +++LL+Y+
Sbjct: 616 SGVSPADISVLLVYL 630


>gi|118497772|ref|YP_898822.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. novicida U112]
 gi|194323744|ref|ZP_03057520.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           novicida FTE]
 gi|208779835|ref|ZP_03247179.1| glucose-inhibited division protein A [Francisella novicida FTG]
 gi|166222934|sp|A0Q753|MNMG_FRATN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118423678|gb|ABK90068.1| glucose inhibited division protein A [Francisella novicida U112]
 gi|194322108|gb|EDX19590.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           novicida FTE]
 gi|208744290|gb|EDZ90590.1| glucose-inhibited division protein A [Francisella novicida FTG]
          Length = 627

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/621 (48%), Positives = 400/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       RQI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNAIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|134301152|ref|YP_001114648.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Desulfotomaculum reducens MI-1]
 gi|172044353|sp|A4J9S0|MNMG_DESRM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134053852|gb|ABO51823.1| glucose inhibited division protein A [Desulfotomaculum reducens
           MI-1]
          Length = 630

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 379/619 (61%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI++G GHAGCEA   AA++G  T ++T     I  M CNPA+GG  K HLV+EIDA
Sbjct: 7   DYDVIIVGAGHAGCEAGLAAARMGCKTLVLTLNLDNIALMPCNPAVGGPAKSHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D A IQ R+LN  KGPAV   R QAD+  Y+  M++ + +QENLDV Q  V
Sbjct: 67  LGGQMGLTTDLAAIQMRMLNTGKGPAVYALRAQADKVKYQQLMKKNLETQENLDVKQLLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   ++ +  Q  +      VV+TTGT+L+G I IG +  P G     PS +L  
Sbjct: 127 EEILVKNGRVTGVATQIGAEFSARAVVVTTGTYLKGRIIIGNVHFPGGPNSQFPSVNLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +      + GR KTGTPAR+D +TI + K   Q  DE +  FS+++      Q+ C +T 
Sbjct: 187 NLRSLGLELGRFKTGTPARVDRRTIDFTKMTIQPGDEEVHNFSYISPVTQREQVPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II EN+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGL+T  
Sbjct: 247 TTEKTHEIIRENLHRSPLYSGIIEGVGPRYCPSIEDKIVRFADKPQHQIFVEPEGLHTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q +  RTIPG+E V+I+RP YAIEYDYI P +L  TLETK+I GL+
Sbjct: 307 MYVQGMSTSLPPDVQLKMYRTIPGMENVSIMRPAYAIEYDYIVPTQLRTTLETKEIIGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A +  + D    SR+++YIGV+IDDL  KG  EPY
Sbjct: 367 AAGQINGTSGYEEAAAQGIMAGINAALQVQEKDPFYLSRSEAYIGVLIDDLVVKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ T+RAEYR+ LR DNAD+RLT  G  +G + + R   +    Q  +     LK++V+ 
Sbjct: 427 RLMTARAEYRLLLRQDNADHRLTQKGYNIGLVSQVRYDHYMNKWQSISKEMERLKTIVIP 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +   ++    S+   +  +       L  P+     L  +          VIE ++IE  
Sbjct: 487 ANEETNKVLKSLESSEITQNTPFINLLRRPEIKYNTLAGLSDHFLDLPQEVIEEVEIEVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  E R++  D DY  +  LS E ++KL   KP ++ QAS+I G+
Sbjct: 547 YEGYIKKQLAQVERFEKLEGRILNIDIDYEMIKGLSLEARQKLKKFKPTSIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI++++   K+
Sbjct: 607 SPADISVLLIWLEQERRKI 625


>gi|134302185|ref|YP_001122154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|166222935|sp|A4IYN2|MNMG_FRATW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|134049962|gb|ABO47033.1| glucose-inhibited division protein A [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 627

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/621 (48%), Positives = 399/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRLLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       RQI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNAIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|225575643|ref|ZP_03784253.1| hypothetical protein RUMHYD_03736 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037153|gb|EEG47399.1| hypothetical protein RUMHYD_03736 [Blautia hydrogenotrophica DSM
           10507]
          Length = 646

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/625 (41%), Positives = 376/625 (60%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYD++V+G GHAGCEAA   A+LG ST + T    +I  M CNP IGG  KGHLVRE
Sbjct: 20  LTESYDIVVVGAGHAGCEAALAGARLGFSTVMFTVSVDSIAMMPCNPNIGGSSKGHLVRE 79

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   +Q ++LN  KGPAV   R QAD++ Y   M++ + +  NL + Q
Sbjct: 80  VDALGGEMGKNIDKTFLQSKMLNRSKGPAVHSLRAQADKQRYSNEMRKTLENTPNLTIKQ 139

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +   I+ +     ++  C  V+L TGT+L+     G +    G  G   +N 
Sbjct: 140 GEVTKLLVKDGKITGVETYSGAVYDCKAVILCTGTYLKARCIYGNVSSDTGPNGLQAANH 199

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S  +      R KTGTPAR+ G +I + K E+QF DE+++PFSF TD   +   QI 
Sbjct: 200 LTDSLRELGIRMYRFKTGTPARIAGNSIDYSKMEEQFGDEKIVPFSFSTDPESVQIPQIS 259

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 260 CWLTYTNERTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIEPEG 319

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+Q  R++ GLE   I++  YAIEYD I+ ++L  TLE K 
Sbjct: 320 LYTNEMYIGGMSSSLPEDVQYQMYRSVAGLENARIVKSAYAIEYDCIDARQLNATLEFKN 379

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ NG++GYEEAAAQGLVAGIN+A K    D +   R+++YIGV+IDDL +K 
Sbjct: 380 IKGLFSAGQFNGSSGYEEAAAQGLVAGINAALKIQGRDFMVLDRSEAYIGVLIDDLVTKE 439

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL   G ++G I E   +R  +  +        ++
Sbjct: 440 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYEVGLIDEEVYQRTLEKERLIEREIKRIE 499

Query: 480 SLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + L +       +   Q        T  E +  P+ + + L  I P+  +    V E++
Sbjct: 500 HVTLGASEAVQNVLERYQSTALKSGTTLAELIRRPELNYEILAEIDPERPQLPWDVKEQV 559

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ  + ++ K  E++ IP++ DY  +  L  E K+KL + +P ++ QAS
Sbjct: 560 NINIKYDGYIRRQKKQVEQFKKLEEKKIPENIDYDEISGLRIEAKQKLKLYRPMSIGQAS 619

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G++PA +++LL+Y+ +   K  
Sbjct: 620 RIAGVSPADVSVLLVYMPRFYKKRE 644


>gi|332678488|gb|AEE87617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella cf. novicida Fx1]
          Length = 627

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/621 (48%), Positives = 400/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       +QI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPQQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNYETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNAIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|95929980|ref|ZP_01312720.1| glucose inhibited division protein A [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133949|gb|EAT15608.1| glucose inhibited division protein A [Desulfuromonas acetoxidans
           DSM 684]
          Length = 622

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/615 (47%), Positives = 410/615 (66%), Gaps = 1/615 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + ++ Y+V+V+G GHAGCEAA  AA++G  T L+      +  MSCNPAIGGL KGHLVR
Sbjct: 3   VYDKKYEVVVVGAGHAGCEAALAAARMGHETLLLNMNLDAVAQMSCNPAIGGLAKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFRVLN KKGPAV+  R QADR LY  +M+  + +QE LD+ 
Sbjct: 63  EIDALGGQMAKNIDKTGIQFRVLNTKKGPAVQASRAQADRFLYSQSMKLVVENQEKLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V+    E+N I ++ +++     C  VVLTTGTF+RG+IH+G    P GR G+ PS 
Sbjct: 123 QGTVSHLVVEENRIVAVEIKEGWRFNCQCVVLTTGTFMRGLIHVGMNHYPGGRSGEPPSL 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +   K  FD GRLKTGTP RL   +I + KTE+Q  D+   PFS++++++  +Q+ C
Sbjct: 183 GLSDQLKKLGFDVGRLKTGTPPRLYRGSIDFSKTEEQPGDDTFRPFSYVSEQVNQQQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQ+FLEPEGL
Sbjct: 243 YITATNEQTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVVRFPEKTTHQVFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+  +YPNG+ T+LP ++Q +F+RTIPGLE V I+R GYAIEYDY++P +L P+LETK I
Sbjct: 303 NSSEIYPNGLPTSLPADVQLKFLRTIPGLENVEIMRVGYAIEYDYVDPIQLKPSLETKLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGT+GYEEAAAQGL+AGIN+ RK      +   R  +YIGV+IDDL + G 
Sbjct: 363 DGLFHAGQVNGTSGYEEAAAQGLMAGINAVRKIEGKPPVILRRDQAYIGVLIDDLINLGS 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT +G ++G + E+R K ++   +  +    LL  
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADERLTELGYQVGLVDEQRWKHYSTKKKHIDEALKLLVD 482

Query: 481 LVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             +T+K+     +++ ++    ++A + L  P+ +I  L  +      +S  V+ +++I 
Sbjct: 483 ERITAKDKDKIAALNVEKISNGQSAKDLLKRPNITIAQLKGVVDGLDAYSDEVLLQVEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + ++ K  E   IP+ FDY+ + +LS E+ EKL  ++P NL QAS+I 
Sbjct: 543 VKYDGYIKRQNDQVEKFKKNELVKIPETFDYTKVQSLSAEVIEKLCKIRPENLGQASRIP 602

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAA+ +L + ++
Sbjct: 603 GVTPAAITILSVLLR 617


>gi|288575406|ref|ZP_05976919.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria mucosa ATCC 25996]
 gi|288568066|gb|EFC89626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria mucosa ATCC 25996]
          Length = 631

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 391/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVSEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|23100945|ref|NP_694412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanobacillus iheyensis HTE831]
 gi|38372364|sp|Q8EKU3|MNMG_OCEIH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|22779180|dbj|BAC15446.1| glucose-inhibited division protein A [Oceanobacillus iheyensis
           HTE831]
          Length = 629

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/617 (43%), Positives = 386/617 (62%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG E+A  AA++GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 7   NYDVIVVGAGHAGVESAYAAARMGAKTLMLTLNLDMIAFMPCNPSIGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+V D + IQ R+LN  KGPAV+  R QAD+ +Y   M+  + ++ENL + QG V
Sbjct: 67  LGGIMGKVIDKSYIQMRMLNTGKGPAVQALRAQADKPIYMKEMKHLMENEENLTIRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   ++ + ++     +V++TTGTF+RG + +G L+  +G      S  L  
Sbjct: 127 NELIVEDGICKGVITETHAAYYADSVIVTTGTFMRGKVLMGDLEYESGPNNQRVSIKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K  F+  R KTGTP R++  TI + KTE Q  D+    FS+ T +    QI C +T 
Sbjct: 187 DLEKHGFEITRFKTGTPPRVNSHTIDYSKTEIQPGDDNPKSFSYETTEQITDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +N++ S++YSG  +  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T+ 
Sbjct: 247 TNEFTHQVINDNLELSSMYSGMKRGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRDTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE IQH+ I+++PGLEK  I+R GYAIEYD + P +L+PTLETK++ GLF
Sbjct: 307 VYVQGLSTSLPESIQHEMIKSVPGLEKAEIMRAGYAIEYDAVVPTQLWPTLETKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AG+N+A KS   + I   R+ +YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGLMAGMNAAAKSLNKEPIILDRSQAYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG   G I E R +RF +  Q+    +  L  +++ 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDIGYDYGLITEERYQRFTEKKQQIEQEKKRLSKIIIK 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                          +  +   AY+ +  P+ S   +  +     + S  V E++ I+  
Sbjct: 487 PTEDIQDIMEKAGASRLKEAIKAYDLMKRPELSYDIVDQMIESNLELSEEVKEQVAIQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   +   +   E + IP+D DY ++  ++ E  EKL  ++P ++ QAS+I G+
Sbjct: 547 YEGYIKKAKEQVDRMLKMEDKKIPEDIDYDAINGIATEAVEKLKKVRPLSVGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
            PA +++LL+YI++ ++
Sbjct: 607 NPADVSILLVYIEQGSI 623


>gi|87122925|ref|ZP_01078790.1| glucose-inhibited division protein A [Marinomonas sp. MED121]
 gi|86161798|gb|EAQ63098.1| glucose-inhibited division protein A [Marinomonas sp. MED121]
          Length = 629

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 386/619 (62%), Gaps = 7/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARTGVKTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR LN +KGPAVR  R QADR LY+ A++  + +QENL + Q  V 
Sbjct: 67  GGAMALATDKGGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHTLENQENLWLFQQSVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E      +V Q     +  TVVLT GTFL G+IH+G      GR GD PS  L   
Sbjct: 127 DLIVEDGCARGVVTQTGIRFQSKTVVLTAGTFLGGLIHVGLENHAGGRAGDPPSIGLAEK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
                F   RLKTGTP R+D +++ +   + Q  D+     S+M  +  +  QI C IT 
Sbjct: 187 LRALPFRVDRLKTGTPPRIDARSVDFSVMQAQPGDDITPVMSYMGSRDLHPAQINCFITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II   +  S +Y+G I   GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  
Sbjct: 247 TNEKTHDIIRGGMDRSPMYTGVIDGIGPRYCPSIEDKIVRFADKNSHQIFVEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R++ G E  +I RPGYAIEYDY NP++L  +LETK + GLF
Sbjct: 307 LYPNGISTSLPFDVQIELVRSMKGFENAHITRPGYAIEYDYFNPQDLKYSLETKHMPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N++  + + +  C  R ++YIGV++DDL + G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGVNASLLAQEKEAWCPRRDEAYIGVLVDDLITMGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG I + R   F    +     ++ LKS  + 
Sbjct: 427 RMFTSRAEYRLILREDNADLRLTEKGRELGLIDDERWAAFCAKKEAIETEQARLKSNWIV 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
                + +I+ K         +  + L  P    +++ ++   P+    S  V E++QI 
Sbjct: 487 PNTDEAAAINPKLENPITHEYSLMDLLKRPGVEYKDVANLKNAPEEP-VSEQVAEQVQIA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  + + ++ +E   +P D DYS++  LSNE+K+KL   KP  L  AS+I+
Sbjct: 546 VKYAGYISRQAEDIERLRRQENTPLPVDMDYSNIEGLSNEVKQKLIEAKPATLAAASRIQ 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA++LLLI +KK  +
Sbjct: 606 GITPAAVSLLLISLKKRAI 624


>gi|259048140|ref|ZP_05738541.1| glucose-inhibited division protein A [Granulicatella adiacens ATCC
           49175]
 gi|259035201|gb|EEW36456.1| glucose-inhibited division protein A [Granulicatella adiacens ATCC
           49175]
          Length = 641

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/626 (42%), Positives = 376/626 (60%), Gaps = 10/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAG EAA  +A++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 18  NYDVVVVGAGHAGSEAALASARMGAKTLLLTMNLEMVAFMPCNPSVGGPAKGVVVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY   M++ I  QENLD+ QG  
Sbjct: 78  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHLYAQEMKKTIEKQENLDLRQGIA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++ R   VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 138 EELIVEDGVCKGVITNTGAIYRSKAVVLTAGTSSRGQIIIGELKYSSGANNSQPSIKLSE 197

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGI 242
           + ++  F+  R KTGTP R+ G +I + KTE Q  D+    FSF +     R   I C +
Sbjct: 198 NLLELGFELARFKTGTPPRIKGSSIDYSKTEIQPGDDTPNLFSFTSKDEDYRYDQIPCWL 257

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEG NT
Sbjct: 258 TYTNEQTHETIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFLEPEGENT 317

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q + IR++ GLE   ++R GYAIEYD + P +L  T ETK +  
Sbjct: 318 EEVYIQGLSTSLPEDVQIKMIRSVEGLENAEMMRTGYAIEYDVVVPHQLKNTFETKLVQN 377

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QGL AGIN+ RK    +     R+D+YIGV++DDL +KG  E
Sbjct: 378 LFTAGQMNGTSGYEEAAGQGLYAGINAVRKIRGEEPFILGRSDAYIGVLVDDLVTKGTTE 437

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    +        ++S+ 
Sbjct: 438 PYRLLTSRAEYRLLLRHDNADLRLTEKGRELGLIDDDRYAEFQAKQEAIEAEIKRMQSIR 497

Query: 483 LTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L         L+    +  +DG      + L  P+ S   L     +A + S  V E+++
Sbjct: 498 LKPTTELQAFLAEKGSAELKDGI--LLSDLLKRPELSYDELVGFAGEAVEVSREVKEQVE 555

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  + + + +++K  E + IP + DY ++  L+ E +++L +++P  + QAS+
Sbjct: 556 ISIKYEGYIAKAIEKVEKLKRMEAKRIPANIDYDAINGLATEARQRLKLIQPETIAQASR 615

Query: 598 IEGMTPAALNLLLIYIKKNTV-KLNE 622
           I G+ PA +++L++YI++  + K+ E
Sbjct: 616 ISGVNPADVSILMVYIEQGKIAKVQE 641


>gi|150398396|ref|YP_001328863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sinorhizobium medicae WSM419]
 gi|166200617|sp|A6UEE8|MNMG_SINMW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150029911|gb|ABR62028.1| glucose inhibited division protein A [Sinorhizobium medicae WSM419]
          Length = 623

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/619 (62%), Positives = 476/619 (76%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAGCEAAA +A+LGA T LITHK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 3   DYDVIVIGGGHAGCEAAAASARLGARTLLITHKKDTIGVMSCNPAIGGLGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYR AMQREI S ENLDV +G+ 
Sbjct: 63  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYREAMQREIASIENLDVAEGDA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE  ++   VM+D    R ++VVLTTGTFLRG+IHIG  K+PAGR+G+ PS  L  
Sbjct: 123 FDLQTEDGVVCGAVMKDGRSFRAASVVLTTGTFLRGLIHIGDRKMPAGRVGEQPSVGLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +F    GRLKTGTPARLDG+TI W +  +Q  DE  +PFSFMTD I NRQI+CG+TR
Sbjct: 183 TLARFGLQLGRLKTGTPARLDGRTIDWGRVGRQGPDENPVPFSFMTDAIVNRQIDCGVTR 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 243 TTDATHKIIADNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q  FIRTIPGLE+V I++PGYAIEYD+++P+EL P+L  +++ GLF
Sbjct: 303 VYPNGISTSLPEDVQDAFIRTIPGLEQVTILQPGYAIEYDHVDPRELEPSLGVRRMPGLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGLVAG+N+A ++ +     FSRTDSYIGVMIDDLTS+G+ EPY
Sbjct: 363 LAGQINGTTGYEEAGAQGLVAGLNAALRAAERAPFFFSRTDSYIGVMIDDLTSRGIAEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP+G++LGC+G  R  RF ++   Y   R+LL+SL +T
Sbjct: 423 RMFTSRAEYRLSLRADNADMRLTPVGIELGCVGNARLTRFQQWKSAYEAGRTLLQSLSVT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG+ RTA+E LSYPD SI+ L  + P+ +  ++ V   L+I+++YA 
Sbjct: 483 PNEGKRFGLKLNQDGQRRTAFEILSYPDQSIEGLRPLWPELQAIATDVAAALEIDAAYAV 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE   IP+ FDY SLP LSNELK+KL+  KP NL QA K++G+TPA
Sbjct: 543 YMERQAADIIGVQREESTAIPEAFDYESLPGLSNELKQKLAQQKPRNLSQAMKVDGVTPA 602

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A++L+L ++++   +   +
Sbjct: 603 AISLILSWLRREDRRSKRV 621


>gi|254373130|ref|ZP_04988619.1| glucose inhibited division protein A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570857|gb|EDN36511.1| glucose inhibited division protein A [Francisella novicida
           GA99-3549]
          Length = 627

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/621 (48%), Positives = 401/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       +QI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPQQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F     +     +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLSKEDQQHFISKKNDIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDEAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATLEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|291547597|emb|CBL20705.1| glucose-inhibited division protein A [Ruminococcus sp. SR1/5]
          Length = 629

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 378/621 (60%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +D+IV+G GHAGCEA+   A+LG +T + T    +I  M CNP +GG  KGHLVRE
Sbjct: 4   LEQFFDIIVVGAGHAGCEASLACARLGLNTVMFTVSVDSIALMPCNPNVGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + ENL + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKQAYSTEMRKTLENTENLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   I+ +     +      VVL TGT+L+     G +    G  G   +N 
Sbjct: 124 GEVTELLVEDGHITGVKTFSGATYHAKAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S  K   +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +   Q  
Sbjct: 184 LTDSLKKLGIEMFRFKTGTPARIAGNTIDYSKMEEQFGDERVVPFSFSTDPESVQIEQKS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEKTHEIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKKRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q++   ++PGLE   I++  YAIEYD INP++L+PTLE KK
Sbjct: 304 LYTNEMYIGGMSSSLPEDVQYEMYHSVPGLENARIVKNAYAIEYDCINPRQLYPTLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K 
Sbjct: 364 IKGLFSGGQFNGSSGYEEAAAQGLIAGINAAMEVKGREQLILDRSEAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL   G ++G I +    +  +  +        ++
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGWEVGLIDDETYHKLQEKERRIQEEIERVE 483

Query: 480 -SLVLTSKNLSSTSISFKQ--DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + V  S  + S   S          T  E +  P+ + + L  I  +  +    V E++
Sbjct: 484 HATVGGSAEVQSLLESLNSTLLKSGTTIAELIRRPELNYKVLAPIDKERPELPEDVCEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  RQM + ++ K  E++ +P+D DY  + +L  E ++KL   +P ++ QAS
Sbjct: 544 EINIKYDGYIRRQMKQVEQFKKLEQKKLPEDIDYEDVGSLRIEARQKLEAYRPVSIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++PA +++LL+Y++  +
Sbjct: 604 RISGVSPADISVLLVYLESRS 624


>gi|220936471|ref|YP_002515370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|254811521|sp|B8GRC9|MNMG_THISH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219997781|gb|ACL74383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 639

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/620 (45%), Positives = 390/620 (62%), Gaps = 5/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+GGGHAG EAA  +A+ GA T L+TH   TIG MSCNPAIGG+GKGHLV+E
Sbjct: 3   FEASYDVIVVGGGHAGTEAALASARAGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLM R AD  GI FR LN +KGPAVR  R QADR  Y+ A++  + +  +L + Q
Sbjct: 63  IDALGGLMARAADRGGIHFRTLNSRKGPAVRATRAQADRVRYKAAVRSVVENTPHLFLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ ++ Q     R   VVLT GTFL G IH+G+++   GR GD PS +
Sbjct: 123 QAVDDLIVEGERVAGVITQTGLRFRSPAVVLTVGTFLGGRIHVGEVQHAGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L     +     GRLKTGTP R+DG++I + +  +Q  D     FSF+  +  +   + C
Sbjct: 183 LAARLRELAPRVGRLKTGTPPRIDGRSIDYAQLTEQPGDAPRPVFSFIGARDEHPPQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I RT   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF +++ HQ+F+EPEGL
Sbjct: 243 WIARTTEHTHAIIRGALHRSPMYSGAIEGVGPRYCPSIEDKVVRFADKDSHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VYPNGIST+LP ++Q + +R+IPG E+ +I RPGYAIEYDY +P++L P+LET+ +
Sbjct: 303 DTHEVYPNGISTSLPFDVQFELVRSIPGFEQAHITRPGYAIEYDYFDPRDLKPSLETRCL 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGLVAG+N+AR    L   C  R ++YIGV+IDDL ++G 
Sbjct: 363 AGLFFAGQINGTTGYEEAAAQGLVAGLNAARSVRDLAPWCPRRDEAYIGVLIDDLITRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G  +G + + R   F    +        L +
Sbjct: 423 AEPYRMFTSRAEYRLMLREDNADLRLTPLGRDMGLVDDARWAAFCTKREAVERETQRLAA 482

Query: 481 LVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
             L  + +   +      G   + +   + L  P+     L  +           V E++
Sbjct: 483 TRLDPERVDREAAERVIGGAFSREQNLLDLLRRPEVDYAALMGLEGAGPGVEDPRVAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + YA Y  RQ  E    +  E   +P+  DY+++  LS E+++KL+  +P  L QA+
Sbjct: 543 EIGAKYAGYIQRQQDEVARQQRHENLALPEGLDYAAITGLSMEVRQKLAAHRPHTLGQAA 602

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA++LLL+++K+ 
Sbjct: 603 RIPGVTPAAVSLLLVHVKRQ 622


>gi|74318826|ref|YP_316566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thiobacillus denitrificans ATCC 25259]
 gi|123745347|sp|Q3SF55|MNMG_THIDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|74058321|gb|AAZ98761.1| Glucose-inhibited division protein A subfamily [Thiobacillus
           denitrificans ATCC 25259]
          Length = 632

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/620 (46%), Positives = 398/620 (64%), Gaps = 5/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+DVIV+GGGHAG EAA  AA++GA T L+TH   T+G+MSCNP+IGG+GKGHLVRE
Sbjct: 3   FPESFDVIVVGGGHAGTEAALAAARMGAKTLLLTHNIETLGAMSCNPSIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D AGIQFR LN  KGPAVR  R QADR LY+ A+++ + +Q  L + Q
Sbjct: 63  VDALGGAMALATDEAGIQFRTLNSSKGPAVRATRAQADRVLYKAAIRQRLENQPGLTLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   +  +  Q   +     VVLT GTFL G++H+G     AGRMGD P+ S
Sbjct: 123 QAVDDLVLDGARVVGVKTQLGILFEARAVVLTAGTFLAGLVHVGLENFQAGRMGDPPAVS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L     + D   GRLKTGTP R+DG+TI + +T+ Q  D+    FSFM D+  +  Q  C
Sbjct: 183 LAARLRELDLPVGRLKTGTPPRIDGRTIDYSRTQVQPGDDPAPVFSFMGDRSMHPAQRPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T + TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIFLEPEGL
Sbjct: 243 WITHTTVATHEIIRGGLDRSPLYAGVIEGVGPRYCPSIEDKITRFADKASHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++QH  +R+IPGLE  +I+RPGYAIEYDY +P+ L  +LETK I
Sbjct: 303 TTHEIYPNGISTSLPFDVQHAIVRSIPGLEHAHILRPGYAIEYDYYDPRNLKASLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGL+AG+N+A ++   D     R ++Y+GV++DDL ++GV
Sbjct: 363 AGLFFAGQINGTTGYEEAAAQGLLAGLNAALQTQGKDAWSPGRHEAYLGVLVDDLITRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G  LG + + R  +F +   E       LKS
Sbjct: 423 SEPYRMFTSRAEYRLQLREDNADMRLTETGRALGVVDDARWDQFNRKRDEVARETERLKS 482

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERL 536
           + +    L   ++T +  +   +  + ++ L  P+     + ++    A      V E++
Sbjct: 483 VWVNPAILPADAATQLIGQPIEREYSLFDLLRRPNLGYAQVLALPGGGAGVADVGVAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I + Y  Y  RQ  E  + + +E   +P D DY+ L  LS E++++L   +P  L QAS
Sbjct: 543 EIAAKYQGYIDRQNEEVDKHREQEGLRLPPDLDYTRLTGLSMEVRQRLQTAQPETLGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +++G+TPAA+++LL+Y K+ 
Sbjct: 603 RLQGVTPAAISVLLVYAKRG 622


>gi|293602669|ref|ZP_06685110.1| glucose-inhibited division protein A [Achromobacter piechaudii ATCC
           43553]
 gi|292818860|gb|EFF77900.1| glucose-inhibited division protein A [Achromobacter piechaudii ATCC
           43553]
          Length = 639

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/625 (47%), Positives = 393/625 (62%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   HEFDVIVVGGGHAGTEAALAAARAGARTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRQAIRGRLENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VEDLMVEGDRVVGAVTQVGLKFRAKTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPAISLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECG 241
               +     GRLKTGTP R+DG++I     E+Q  D   IP FS+M +  +  RQ+ C 
Sbjct: 185 QRLKELKLPQGRLKTGTPPRIDGRSINTSILEEQPGDLDPIPVFSYMGNVSMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNSRTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q + I ++ GLE  +I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 THEVYPNGVSTSLPFDVQLELIHSLRGLENAHIMRPGYAIEYDYFDPRGLKSTLETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+A  S   D     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLFFAGQINGTTGYEEAAAQGLLAGINAALLSLGRDQWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F +           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRQLGIVDDARWDAFNRKRDAVAAEVERLKSS 484

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
            +  + L    +  +  K   +  +  + L  P+ S + L +                  
Sbjct: 485 WVNPRILPLEVAEPLLGKAIEREYSLADLLKRPNVSYEALMAARNADGSLLAGPGVVGDD 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E + IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 VLAEQVEIQVKYAGYIARQQDEVQKQISHELQPIPADVDYDAVTSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TVGQAARISGVTPAAISLLLIHLKR 629


>gi|295691565|ref|YP_003595258.1| glucose inhibited division protein A [Caulobacter segnis ATCC
           21756]
 gi|295433468|gb|ADG12640.1| glucose inhibited division protein A [Caulobacter segnis ATCC
           21756]
          Length = 618

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/617 (54%), Positives = 439/617 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSKSWDVIVIGGGHAGCEAAAASARTGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR+LYR AMQ E+ S  NLD+I 
Sbjct: 61  IDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRKLYREAMQAELFSTGNLDIIA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   ++  +  +    R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+  
Sbjct: 121 AAAEDLIVEDGKVAGAMDGEGRTYRAPRVILTTGTFLKGVIHRGEERIPAGRVGDQPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTPARLDG+TI WD+ + Q AD+  +PFS++ DKI   QI CG
Sbjct: 181 LSDRLYGLGFQMGRLKTGTPARLDGRTIAWDRLDSQAADDEPVPFSYLNDKIDVPQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL+
Sbjct: 241 VTFTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST++ EE Q  F+RTIPGLE V ++R GYAIEYDY++P+EL+ TLETK++ 
Sbjct: 301 DPTVYPNGISTSVSEETQLLFLRTIPGLETVEVLRYGYAIEYDYVDPRELYATLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A      + + F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLVAGLNAALAEQGREPVVFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R++LR DNAD RLT  G+ LG +GERR   +A+        R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLTLRADNADQRLTDRGVALGVVGERRATAWAEKKARLEAARAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT             DG  R  +  L+YPD ++ +L  + P+   +++ V E+++IE++
Sbjct: 481 SLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRVWPEVFTWNTDVREQIEIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++EKL+ ++P  L QA++IEG+
Sbjct: 541 YAGYLDRQRADAESLRKDEDLRLPADLDYADIGSLSNEVREKLARVRPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKKNTV 618
           TP AL  LL ++++   
Sbjct: 601 TPGALTALLAHVRRTRA 617


>gi|325983682|ref|YP_004296084.1| glucose inhibited division protein A [Nitrosomonas sp. AL212]
 gi|325533201|gb|ADZ27922.1| glucose inhibited division protein A [Nitrosomonas sp. AL212]
          Length = 627

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/619 (48%), Positives = 397/619 (64%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +D+IV+GGGHAG EAA  AA++G  T L+TH   TIG MSCNP+IGG+GK HLV+EI
Sbjct: 4   HTDFDIIVVGGGHAGTEAALAAARMGCQTLLLTHNIETIGQMSCNPSIGGIGKSHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG  AD AGIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL V+Q 
Sbjct: 64  DALGGAMGMAADEAGIQFRILNSSKGPAVRATRAQADRVLYKQAIRNRVENQPNLRVMQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E++ +  +V Q    I    V+LT GTFL G+ HIGK    AGR GD PS +L
Sbjct: 124 AVDDLIIEQDRVVGVVTQLQIKIHARAVILTVGTFLAGLAHIGKTHFKAGRAGDPPSITL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
                + +F  GRLKTGTP R+DG+T+ + K  +Q  D+    FS + TD    RQI C 
Sbjct: 184 AQRLREMEFPAGRLKTGTPPRIDGRTMNYAKLLEQPGDQPTPWFSLIATDIRHPRQISCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I + +  S ++SG I+  GPRYCPSIEDK+VRF  R  HQIFLEPEGL 
Sbjct: 244 ITHTNDRTHDVIRDGLVDSPLFSGKIEGIGPRYCPSIEDKVVRFSARESHQIFLEPEGLG 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YPNGIST+L  E+Q + I +I GLE  +I RPGYAIEYDY +P+ L  +LETK I 
Sbjct: 304 THEIYPNGISTSLSFEVQVKLIHSIAGLENAHITRPGYAIEYDYFDPRNLKRSLETKTIE 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAAAQGL+AG+N+A K  + D     R ++Y+GV++DDL + GV 
Sbjct: 364 NLFFAGQINGTTGYEEAAAQGLLAGVNAALKIQRRDAWVPQRNEAYLGVLVDDLVTSGVT 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LG I ++R   F+   +     +  L S 
Sbjct: 424 EPYRMFTSRAEYRLQLREDNADLRLTETGRNLGLIDDQRWAAFSAKQEAIEKEQQRLNST 483

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQ 537
            +    L    +  +  K   +  T  E L  PD +  +L ++        ++ V+E+++
Sbjct: 484 RVLPGTLPQQDAIRVLGKSIEREYTLTELLKRPDVTYHSLMTLPGAGEPVTNAQVVEQVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  RQ  E       E  L+PKD DY ++  LSNE+++KL+  KP  + QAS+
Sbjct: 544 IQAKYHGYIQRQQEEVSRQAQYENTLLPKDIDYCAVKGLSNEVQQKLNQHKPETVGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA++LLL+++K+ 
Sbjct: 604 ISGVTPAAISLLLVHLKRG 622


>gi|160941471|ref|ZP_02088806.1| hypothetical protein CLOBOL_06362 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435617|gb|EDP13384.1| hypothetical protein CLOBOL_06362 [Clostridium bolteae ATCC
           BAA-613]
          Length = 631

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 378/623 (60%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+++G GHAGCEAA  +A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 11  LEETYDVVIVGAGHAGCEAALASARLGMETIMFTVSVDSIALMPCNPNIGGSSKGHLVRE 70

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + E+L + Q
Sbjct: 71  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQDYSRHMRRTLENTEHLTIRQ 130

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   I  +     ++     V+L TGT+L+     G +  P G  G   +N 
Sbjct: 131 AEVSEIMAEDGKIRGVKTFSGAVYYAKAVILCTGTYLKARCIYGDVSNPTGPNGLQAANH 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L +S  +   +  R KTGTPAR+D K+I + K E+QF D R++PFSF T  D+I   Q+ 
Sbjct: 191 LTDSLREHGIEMFRFKTGTPARVDKKSIDFSKMEEQFGDLRIVPFSFSTNPDEIQKDQVS 250

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  THRII +N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG
Sbjct: 251 CWLTYTNENTHRIIKDNLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFVEPEG 310

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+PGLEKV I+R  YAIEYD IN  +L PTLE KK
Sbjct: 311 LYTNEMYLGGMSSSLPEDVQYAMYRTVPGLEKVKIVRNAYAIEYDCINALQLKPTLEFKK 370

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N+  K    + +   R+ +YIGV+IDDL +K 
Sbjct: 371 ISGLFAGGQFNGSSGYEEAAVQGFMAGVNAVMKIRGQEAVVLDRSQAYIGVLIDDLVTKE 430

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   +   + + +       L+
Sbjct: 431 NHEPYRMMTSRAEYRLLLRQDNADIRLRKIGHEIGLVCDEEYEHLLRKMDDIQSEIKRLE 490

Query: 480 SLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
             V+   +     L +   +  + G   T  E +  P+     L  +     +    V E
Sbjct: 491 KTVIGVSDRVQMFLENYGSTLLKSGI--TLAELVKRPELDYVKLAELDEGRPELPDDVRE 548

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ IE  Y  Y  RQM +  + K  E + +P+DFDYS + +L  E  +KL+ ++P  + Q
Sbjct: 549 QVNIEIKYEGYIKRQMQQVAQFKKLEDKKLPEDFDYSEVNSLRREAVQKLNKVQPATIGQ 608

Query: 595 ASKIEGMTPAALNLLLIYIKKNT 617
           AS+I G++PA +++LL++  +  
Sbjct: 609 ASRISGVSPADISVLLVHFTRKQ 631


>gi|261378094|ref|ZP_05982667.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria cinerea ATCC 14685]
 gi|269145545|gb|EEZ71963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria cinerea ATCC 14685]
          Length = 631

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 391/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGDRISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  KQ  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTKQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|154503057|ref|ZP_02040117.1| hypothetical protein RUMGNA_00879 [Ruminococcus gnavus ATCC 29149]
 gi|153796298|gb|EDN78718.1| hypothetical protein RUMGNA_00879 [Ruminococcus gnavus ATCC 29149]
          Length = 635

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 385/622 (61%), Gaps = 10/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+++G GHAGCEAA   A++G  T + T    +I  M CNP IGG  KGHLV+E+DA
Sbjct: 14  EYDVVIVGAGHAGCEAALACARMGFQTLMFTVSVDSIALMPCNPNIGGSSKGHLVKEVDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENL++ Q EV
Sbjct: 74  LGGEMGKVIDRTFIQSKMLNSSKGPAVHSLRAQADKANYSKTMRKVLEDQENLEIKQMEV 133

Query: 125 AGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                E     K II+ +     +  RC  VVL TGT+L+     G + +  G  G  P+
Sbjct: 134 TEILAEDGADGKKIITGVRTYSGATYRCRAVVLCTGTYLKARCIYGDVSMQTGPNGLQPA 193

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQ 237
           N L +S  +   +  R KTGTPAR+D ++I + K E+Q  DER++PFSF TD   I   Q
Sbjct: 194 NYLTDSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQKGDERIVPFSFTTDPEDIQIDQ 253

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T TN +TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EP
Sbjct: 254 VSCWLTYTNEKTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEP 313

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE 
Sbjct: 314 EGLDTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEF 373

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLF  GQ NG++GYEEAAAQGLVAGIN+ARK    + I   R++ YIGV+IDDL +
Sbjct: 374 KNVEGLFSGGQFNGSSGYEEAAAQGLVAGINAARKLQGKEGIIIDRSEGYIGVLIDDLVT 433

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RLT IG ++G I E R +   K  ++       
Sbjct: 434 KESHEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEVGLIEEERYQNLLKKEEQIQKEIER 493

Query: 478 LKSLVL-TSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           ++S+ + T+K +     S          +  + +  P+ S + L S+     +    V E
Sbjct: 494 VESVHVGTTKEVQELLESCGSTPLVSGASLADLIRRPELSYEILASVDKMRPELKYDVAE 553

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ  + ++ K  EK+ IP D +Y  + +L  E K+KLS ++P ++ Q
Sbjct: 554 QVNINIKYEGYIKRQKKQVEQFKKLEKKRIPADINYEEVQSLRLEAKQKLSQIRPASIGQ 613

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G++PA +++LL+Y++  
Sbjct: 614 ASRISGVSPADISVLLVYLESR 635


>gi|255527593|ref|ZP_05394457.1| glucose inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296186791|ref|ZP_06855192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
 gi|255508726|gb|EET85102.1| glucose inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296048505|gb|EFG87938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
          Length = 629

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 386/621 (62%), Gaps = 3/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG GHAGCEA   +A++G  T + T    ++G M CNP +GG  KGHLVREIDA
Sbjct: 7   EYDVVVIGAGHAGCEAGLASARMGCKTLMCTMNLDSVGFMPCNPNVGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  I  ++NL + Q EV
Sbjct: 67  LGGEMGVNIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHVIEKEKNLYLRQIEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ ++ +  +   VVLTTGT+LRG I IG++    G  G  P+N L  
Sbjct: 127 VDIKVENNKVCGVLTKNGAYFKTKAVVLTTGTYLRGKIIIGEVSYSGGPSGLFPANELSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             +    +  R KTGTPAR++ +++   K  +Q  DE+++PFSFM+D I   Q+ C +T 
Sbjct: 187 KLIDLGIELRRFKTGTPARVNRRSVDLSKMIEQKGDEKIVPFSFMSDNIDRDQVSCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +T ++I +NI  S +Y+G IKS GPRYCPSIEDK++RF ++  HQIF+EPEG NT+ 
Sbjct: 247 TTDDTLKVIRDNIHRSPLYNGTIKSVGPRYCPSIEDKVMRFPDKEKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G S++LPEE+Q    +TI GLE V I+R  YAIEYD INP++L  +LE K I GLF
Sbjct: 307 LYVGGASSSLPEEVQLAMYKTIEGLENVEILRTAYAIEYDCINPQQLKLSLEFKSIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAAAQG++AGIN++ K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQVNGSSGYEEAAAQGIIAGINASLKIKEKEPLILKRSDAYIGVLIDDLVTKGTEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT IG  +G + E R  +F K  +      + +K++ + 
Sbjct: 427 RMMTSRSEYRLILRQDNADLRLTEIGHNIGLVNEERYNKFLKRKKTIEEEVARMKNIQVN 486

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K        S++  +  K+ + YE +  P+     +  +  D  +    + E +   S 
Sbjct: 487 PKKEVIEFLVSLNSTELKKSISLYELIKRPELDYFKVEPLDNDRIELPDDIKEEVNTISK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + IP + DY+ +  L  E  +KLS +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVVQFKKFENKTIPDNIDYNDINGLRLEAVQKLSKVKPMNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           +PA +++LLIY+++     ++
Sbjct: 607 SPADISVLLIYLEREYRSKSQ 627


>gi|121602981|ref|YP_980310.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Polaromonas naphthalenivorans CJ2]
 gi|205375705|sp|A1VIB1|MNMG_POLNA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120591950|gb|ABM35389.1| glucose inhibited division protein A [Polaromonas naphthalenivorans
           CJ2]
          Length = 667

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/653 (44%), Positives = 387/653 (59%), Gaps = 35/653 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   QEFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R I +Q NL + Q  
Sbjct: 65  AMGGAMALATDEGGIQFRILNGSKGPAVRATRAQADRILYKAAIRRMIENQPNLWLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G IH+G    PAGR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQVGIKFRARTVVLTAGTFLDGKIHVGLNNYPAGRAGDPPAVSLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-------RLIPFSFMTDKITNR 236
               +     GRLKTGTP R+DG++I + K   Q  D         +  FSFM   + + 
Sbjct: 185 ARLKELKLPQGRLKTGTPPRIDGRSIDFSKCGVQPGDGMPGGTPGPVPVFSFMGGNVPHP 244

Query: 237 -QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C IT TN  TH II      S +++G I   GPRYCPS+EDKI RF  ++ HQIFL
Sbjct: 245 KQVPCWITHTNERTHDIIRSGFDRSPMFTGKIDGVGPRYCPSVEDKINRFAGKDSHQIFL 304

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL T  +YPNGIST+LP +IQ+  +R++ G+E  +I+RPGYAIEYDY +P+ L    
Sbjct: 305 EPEGLTTHEIYPNGISTSLPFDIQYALVRSMAGMENAHILRPGYAIEYDYFDPRALKTNF 364

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET+ I GLF AGQINGTTGYEEAAAQG+ AGIN+A +  + +     R ++Y+GV++DDL
Sbjct: 365 ETRAIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQCQEKEAWLPKRDEAYLGVLVDDL 424

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G +LG + + R   F +     +   
Sbjct: 425 ITKGVTEPYRMFTSRAEFRLMLREDNADMRLTEKGRELGLVDDARWDAFNRKRDIVSRET 484

Query: 476 SLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------PDAR 526
             L++L +   NL    +  +  K   +     + L  PD +   L S+       P+  
Sbjct: 485 QRLRALWINPNNLPASEAERVLGKAIEREYNLADLLRRPDVNYAGLMSLDGGRYANPEIP 544

Query: 527 ------------------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
                                  VIE+++I + YA Y   Q +E +     E   +P D 
Sbjct: 545 TGNEDVSRETSTDSALPADLVKSVIEQIEITAKYAGYIDLQKVEVERASHYENLKLPADL 604

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           DY  + ALS E ++ LS  +P  L  AS+I+G+TPA ++LLL+++KKN  K  
Sbjct: 605 DYLQVSALSFEARQMLSKHRPETLGLASRIQGITPATISLLLVHLKKNLWKNT 657


>gi|167766871|ref|ZP_02438924.1| hypothetical protein CLOSS21_01388 [Clostridium sp. SS2/1]
 gi|317499288|ref|ZP_07957561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711419|gb|EDS21998.1| hypothetical protein CLOSS21_01388 [Clostridium sp. SS2/1]
 gi|291558410|emb|CBL37210.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SSC/2]
 gi|316893457|gb|EFV15666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 627

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/619 (43%), Positives = 380/619 (61%), Gaps = 5/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+IV+G GHAGCEAA  AA++G  T   T    ++  M CNP IGG  KGHLV+E
Sbjct: 4   LEEKYDIIVVGAGHAGCEAALAAARMGFETICFTVSMDSVALMPCNPNIGGSSKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   +Q ++LN  KGPAV   R QAD+++Y ++M + + +  NL + Q
Sbjct: 64  IDALGGEMGKNIDKTYLQSKMLNKSKGPAVHSLRAQADKKMYSISMTQVMGNTPNLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   I  +     ++     VVLTTGT+L+     G++    G  G   +N 
Sbjct: 124 GEVTEILVEDGKIKGVKTYSGAVYYAKAVVLTTGTYLKARCIYGEVSNHTGPNGLQAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L +S         R KTGTPAR+D  TI + K  +QF DER++PFSF    + I   QI 
Sbjct: 184 LTDSLKSHGISMRRFKTGTPARIDKNTIDFSKMAEQFGDERIVPFSFTNKEEDIKRDQIS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTTEETHEIIKENIHRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+  +L  +LE K+
Sbjct: 304 EYTNEMYVGGMSSSLPEDVQYKMYHSVPGLENAKIVRNAYAIEYDCIDATQLKASLEFKE 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+ARK  + D I   R+ +YIGV+IDDL +K 
Sbjct: 364 IDGLFSGGQFNGSSGYEEAAAQGLMAGINAARKLQEKDPIILDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RLT IG + G I + R  +     Q+       L+
Sbjct: 424 TQEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEAGLISQERYDKLLVKEQQIEDEMKRLE 483

Query: 480 SLVL-TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +  SKN+ S    +       +    E +  P+ +  +L  I P+  ++   V E++
Sbjct: 484 DINVGASKNVQSLLEELGSTTLKSSAKMTELIRRPELTYMDLAPIDPERPEYDLDVQEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ + K+ K  EK+ IP+D DY  + +L  E K+KLS ++P ++ QAS
Sbjct: 544 NINIKYEGYIKRQLSQVKQFKKMEKKRIPEDIDYEDVGSLRIEAKQKLSKIRPSSIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 604 RISGVSPADISVLLIYLEQ 622


>gi|317472411|ref|ZP_07931736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900131|gb|EFV22120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerostipes sp. 3_2_56FAA]
          Length = 627

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/619 (42%), Positives = 378/619 (61%), Gaps = 5/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD++V+G GHAGCEAA  +A+LG  T   T    +I  M CNP IGG  KGHLV+E
Sbjct: 4   LEEFYDIVVVGAGHAGCEAALASARLGFKTICFTVSMDSIALMPCNPNIGGSSKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+++Y +AM + + + +NL V Q
Sbjct: 64  IDALGGEMGVNIDKTYIQSKMLNRSKGPAVHSLRAQADKKMYSMAMTQTMGNTKNLTVRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV    T+   ++ +     ++     V+LTTGT+L+     G +    G  G   +N 
Sbjct: 124 GEVTQILTQNGKVTGVKTYSGAVYHAKAVILTTGTYLKARCIYGDVSNETGPNGLQAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S      +  R KTGTPAR+D  +I ++K E+QF D++++PFSF    + I   QI 
Sbjct: 184 LTQSLKDLGIEMRRFKTGTPARIDKNSIDFNKMEEQFGDDKIVPFSFTNTREDIQRDQIS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHEIIRENIGRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y  G+S++LPE++Q+   R++ GLE V IIR  YAIEYD IN  +L P+LE +K
Sbjct: 304 EYTNEMYVGGMSSSLPEDVQYAMYRSVTGLENVKIIRNAYAIEYDCINATQLKPSLEFRK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R+ +YIGV+IDDL +K 
Sbjct: 364 IGGLFSAGQFNGSSGYEEAAAQGLIAGINAARMIQGKESLVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I E R +   +         + L 
Sbjct: 424 TSEPYRMMTSRAEYRLLLRQDNADLRLSKIGYEMGLISEERYQNLLEKEARIEKEINRLS 483

Query: 480 SLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + + +       +S     +   + T  E +  P+ +   L  I PD  ++   V E++
Sbjct: 484 RVNVGASGKVQDLLSKCQSTELKSSATMAELIRRPELTYDMLSPIDPDRPEYPEDVREQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ + K+ K  EK+ IP+   Y  +  L  E  +KLS ++P ++ QAS
Sbjct: 544 NINIKYEGYIKRQLSQVKQFKRLEKKKIPEGIKYEDIGNLRIEAIQKLSKIRPASIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 604 RISGVSPADISVLLIYLEQ 622


>gi|118594208|ref|ZP_01551555.1| glucose-inhibited division protein A [Methylophilales bacterium
           HTCC2181]
 gi|118439986|gb|EAV46613.1| glucose-inhibited division protein A [Methylophilales bacterium
           HTCC2181]
          Length = 631

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/620 (47%), Positives = 395/620 (63%), Gaps = 4/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  +A++G  T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPDKFDVIVVGGGHAGSEAALASARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G+M R  D AGIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q++L + Q
Sbjct: 63  IDAMGGVMARATDIAGIQFRILNRSKGPAVRATRAQADRVLYKAAIRQFLENQKDLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V   + + N IS +V Q         VVLT GTFL G+IH+G      GR GD  S +
Sbjct: 123 QSVDDVSIKNNKISGVVTQSGIQFFSDNVVLTAGTFLGGLIHVGMESYKGGRAGDPSSET 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L       +   GRLKTGTP R+DG++I +   E+Q  D     FSF+   I +  QI C
Sbjct: 183 LAAKLKDLNLPVGRLKTGTPPRIDGRSIDYSLMEEQPGDLPTPRFSFIDPLIKHPEQIAC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNL+TH II   +  S +Y+G I+  GPRYCPS+EDKI RF ++  HQ+F+EPEGL
Sbjct: 243 WITHTNLKTHDIIRSGLDRSPMYTGVIEGIGPRYCPSVEDKIHRFADKESHQVFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VYPNGIST+LP ++Q Q +R+I G+E  +I+RPGYAIEYDY +P+ L  +LETK I
Sbjct: 303 NTHEVYPNGISTSLPFDVQLQLVRSIKGMESAHILRPGYAIEYDYYDPRALKASLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQINGTTGYEEAAAQGLVAG N+A +S   +    SR +SY+GVMIDDL +KGV
Sbjct: 363 AGLFFAGQINGTTGYEEAAAQGLVAGTNAALRSKGEEGWSPSRENSYMGVMIDDLITKGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT     LG I E +   F K  +        LK+
Sbjct: 423 SEPYRMFTSRAEYRLLLREDNADLRLTERARTLGLICEHQWTNFNKKQESIKEEEKRLKN 482

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +V+   +   L    +  K       A++ L  P+ S   L  +  D      LV E+++
Sbjct: 483 MVIRPSSGSILKQEELFGKALDSEYKAFDLLKRPEVSYDKLMRLIDDEGAMGELVREQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y+ Y  RQ  E +  K + +  IP + DY ++  +  E K+ LS+ KP  + QAS+
Sbjct: 543 ILAKYSGYIVRQKAEIERNKGQMQTSIPSNMDYGAVHGIGIEAKQLLSLHKPETVHQASR 602

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+TP+ +++LLI++KK  
Sbjct: 603 ISGITPSTISILLIHLKKYK 622


>gi|153815416|ref|ZP_01968084.1| hypothetical protein RUMTOR_01651 [Ruminococcus torques ATCC 27756]
 gi|145847275|gb|EDK24193.1| hypothetical protein RUMTOR_01651 [Ruminococcus torques ATCC 27756]
          Length = 636

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 377/620 (60%), Gaps = 11/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDA
Sbjct: 14  QYDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEV 133

Query: 125 AGFNTEKN------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                +         I  +     ++  C  V+L TGT+L+     G++    G  G   
Sbjct: 134 TDIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQS 193

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNR 236
           +N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   
Sbjct: 194 ANYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQID 253

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+E
Sbjct: 254 QVSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIE 313

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE
Sbjct: 314 PEGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLE 373

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL 
Sbjct: 374 FKNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLV 433

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K   EPYRM TSRAEYR+ LR DNAD RLT IG K+G I E R ++  +  +       
Sbjct: 434 TKESREPYRMMTSRAEYRLLLRQDNADQRLTKIGYKIGLISEERYEKLLEKERLIEEEIH 493

Query: 477 LLKSLVL-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            ++ + + TS+ + +   +++        T  E +  P+ S + L  I  + +     V 
Sbjct: 494 RVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPEDVA 553

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P ++ 
Sbjct: 554 QQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPASIG 613

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA +++LL+Y+
Sbjct: 614 QASRISGVSPADVSVLLVYL 633


>gi|255068632|ref|ZP_05320487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sicca ATCC 29256]
 gi|255047130|gb|EET42594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sicca ATCC 29256]
          Length = 636

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/619 (46%), Positives = 391/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSRLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ Q +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIQLVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANALQYIRGQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVSEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DY+ +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYAKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|325267703|ref|ZP_08134354.1| glucose inhibited division protein A [Kingella denitrificans ATCC
           33394]
 gi|324980827|gb|EGC16488.1| glucose inhibited division protein A [Kingella denitrificans ATCC
           33394]
          Length = 650

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 27  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 86

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 87  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQS 146

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 147 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 206

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 207 GCLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 266

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 267 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 326

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 327 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 386

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 387 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 446

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 447 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 506

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +      VIE+++
Sbjct: 507 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYTALMTLEGAQPECRLPENVIEQVE 566

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P++ DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 567 IQVKYQGYIDRQNEEIDSRRDLETLRLPENIDYSKVKGLSAEVQQKLNQHKPETVGQASR 626

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 627 ISGVTPAAVALLMVHLKRG 645


>gi|254483151|ref|ZP_05096384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine gamma proteobacterium HTCC2148]
 gi|214036522|gb|EEB77196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [marine gamma proteobacterium HTCC2148]
          Length = 643

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/621 (45%), Positives = 384/621 (61%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + +DVIVIGGGHAG EA   +A++G  T L+TH   T+G MSCNPAIGG+GK HLV+E
Sbjct: 11  YKQQFDVIVIGGGHAGTEACLASARMGCRTLLLTHSVDTLGQMSCNPAIGGIGKSHLVKE 70

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR  D AGIQFRVLN +KGPAVR  R QADR LYR A+++ +  QENL + Q
Sbjct: 71  VDALGGAMGRATDLAGIQFRVLNSRKGPAVRATRAQADRVLYRNAIRQMLEGQENLSIFQ 130

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  ++   + Q   + R   VVLTTGTFL G +HIG      GR GD PS +
Sbjct: 131 QPVDDLLIESGVVVGAITQMGVVFRAPRVVLTTGTFLGGKLHIGMENSAGGRAGDPPSIA 190

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L     +  F   RLKTGTP R+D +++ + + ++Q+ DE L   SFM        Q  C
Sbjct: 191 LAQRLRELPFRVERLKTGTPPRIDARSVDFSELDEQWGDEPLPVMSFMGSVDEHPEQRCC 250

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S ++SG I+  GPRYCPS+EDKI RF ++N HQ+F+EPEGL
Sbjct: 251 WITHTNERTHDIIRAGLDRSPMFSGVIEGTGPRYCPSVEDKIHRFADKNSHQVFIEPEGL 310

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +YPNGIST+LP ++Q   + +I G E  +I RPGYAIEYD+ +P++L  +LETK +
Sbjct: 311 TSPELYPNGISTSLPFDVQIDLVHSIKGFENAHITRPGYAIEYDFFDPRDLQSSLETKAL 370

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAAAQGL+AG+N+A         C  R ++YIGV++DDL + G 
Sbjct: 371 PGLYFAGQINGTTGYEEAAAQGLLAGLNAALAVKGEQAWCPRRDEAYIGVLVDDLITMGT 430

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           +EPYRMFTSRAE+R+ LR DNAD RLT  G +LG +G+ R +RF +           L S
Sbjct: 431 MEPYRMFTSRAEHRLLLREDNADLRLTGKGRELGLVGDARWQRFEQKSDAIVSEAERLGS 490

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             L   +  +  ++ K      +  +  + L  P+    ++  +  +         E++ 
Sbjct: 491 TWLQPGSAEAEKLADKLTSPLAREYSLADLLKRPELDYADIAGLKGE-PTTDLQAAEQVA 549

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ YA Y  RQ  +   ++  E   +P D DY  +  LSNE+K+KL   +P  L +A +
Sbjct: 550 IQAKYAGYIDRQQGDIDRLRRYENAALPADLDYEQVDGLSNEVKQKLGEGRPDTLARAGR 609

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLLIY+KK   
Sbjct: 610 IPGVTPAAVSLLLIYLKKRGA 630


>gi|197302261|ref|ZP_03167320.1| hypothetical protein RUMLAC_00988 [Ruminococcus lactaris ATCC
           29176]
 gi|197298692|gb|EDY33233.1| hypothetical protein RUMLAC_00988 [Ruminococcus lactaris ATCC
           29176]
          Length = 630

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/614 (43%), Positives = 368/614 (59%), Gaps = 5/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 14  EYDVAVVGAGHAGCEAALATARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVRELDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENLD+ Q EV
Sbjct: 74  LGGEMGKVIDRTFIQSKMLNSSKGPAVHSLRAQADKANYSRTMRQVLQKQENLDIRQMEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   I+ +     ++ RC  VVL TGT+L+     G++    G  G   +N L +
Sbjct: 134 TELLTEDGKITGVQTYSGAIYRCRAVVLCTGTYLKARCIYGEISTHTGPNGLQSANYLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   Q  C +
Sbjct: 194 SLKALGIRMYRFKTGTPARIDKTSIDFTKMEEQKGDERVVPFSFTTDPESVQIDQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG  T
Sbjct: 254 TYTNERTHEIIRSNLNRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEPEGNET 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G+S++LPE++Q++  R++PGLE   IIR  YAIEYD I+ ++L  TLE K I G
Sbjct: 314 TEMYVGGMSSSLPEDVQYEMYRSVPGLEHAKIIRNAYAIEYDCIDARQLKSTLEFKAIEG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF  GQ NG++GYEEAAAQGL+AGIN+ARK    + I   R+  YIGV+IDDL +K   E
Sbjct: 374 LFSGGQFNGSSGYEEAAAQGLIAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RL+ IG ++G I + R  R  K  +        +  + 
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADIRLSAIGHEVGLIDDERYARLLKKEELIAKEIERVNHVN 493

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L +       +            T  E +  P+ S + L  +     +    V E++ I 
Sbjct: 494 LGTSEAVQKLLEAYGSTPLTSGTTLAELIRRPELSYEKLAPVDNARPELPYDVKEQVDIN 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + ++ K  E + IP++ DY S+ +L  E K+KL+ ++P ++ QAS+I 
Sbjct: 554 IKYDGYIKRQMRQVEQFKKLENKRIPENIDYDSIQSLRLEAKQKLNQIRPASIGQASRIS 613

Query: 600 GMTPAALNLLLIYI 613
           G++PA +++LL+Y+
Sbjct: 614 GVSPADISVLLVYL 627


>gi|163814996|ref|ZP_02206383.1| hypothetical protein COPEUT_01149 [Coprococcus eutactus ATCC 27759]
 gi|158449679|gb|EDP26674.1| hypothetical protein COPEUT_01149 [Coprococcus eutactus ATCC 27759]
          Length = 630

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/627 (42%), Positives = 377/627 (60%), Gaps = 6/627 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++  YDV+++G GHAGCEAA  +A+LG +T + T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VLDEEYDVVIVGAGHAGCEAALASARLGLNTIIFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + +NL + 
Sbjct: 63  EIDALGGEMGKNIDKTYIQSKMLNSSKGPAVHSLRAQADKANYSRTMKYTLENTDNLTLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    +  I+  +     +  +   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSEILVDDGIVKGVKTYSGATYKAKAVVLCTGTYLKARCIYGDVVYHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S         R KTGTPARLD +TI + + E+Q  DE+++PFSF   +  I   QI
Sbjct: 183 HLSDSMKNAGISIRRFKTGTPARLDKRTIDFSQMEEQKGDEKIVPFSFTNTESDIKREQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN +TH II  NI+ S ++SG I+  GPRYCPSIEDK+ +F +++ HQIF+EPE
Sbjct: 243 SCWLCYTNEKTHEIIRNNIERSPLFSGVIEGTGPRYCPSIEDKVTKFPDKSRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q+  I ++ GLE   IIR  YAIEYD IN   L P+LE K
Sbjct: 303 GEFTNEMYMGGMSSSLPEDVQYDMIHSMKGLENAKIIRNAYAIEYDCINAINLKPSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQING++GYEEAAAQGL+AGIN+ARK      +   R+ +YIGV+IDDL +K
Sbjct: 363 TISGLFGAGQINGSSGYEEAAAQGLMAGINAARKVQGKTPVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG  +G I + R  +F    ++       L
Sbjct: 423 ETSEPYRMMTSRAEYRLLLRQDNADIRLTDIGHDIGLIDDERYSKFILKKKQIEKEIYRL 482

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           ++ ++ +       +  K     +TA    E +  P+ S +++  I     K    VIE+
Sbjct: 483 ENTMVGANATIQKFLEKKNSTGLKTAASLAELIRRPELSYEDIEEIDEGREKLPDDVIEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ  +  + K  E R +P D DY  +  L  E ++KLS ++P N+ QA
Sbjct: 543 INITIKYKGYIDRQNQQVHQFKKLESRRLPDDIDYEQIKNLRLEARQKLSKIRPENIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G++PA +++LL+Y+K    KL+E
Sbjct: 603 SRISGVSPADISVLLVYMK-MKGKLSE 628


>gi|317500878|ref|ZP_07959090.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897758|gb|EFV19817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 636

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/620 (42%), Positives = 377/620 (60%), Gaps = 11/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDA
Sbjct: 14  QYDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEV 133

Query: 125 AGFNTEKN------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                +         I  +     ++  C  V+L TGT+L+     G++    G  G   
Sbjct: 134 TDIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQS 193

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNR 236
           +N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   
Sbjct: 194 ANYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQID 253

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+E
Sbjct: 254 QVSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIE 313

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE
Sbjct: 314 PEGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLE 373

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL 
Sbjct: 374 FKNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLV 433

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K   EPYRM TSRAEYR+ LR DNAD RLT +G ++G I E R ++  +  +       
Sbjct: 434 TKESREPYRMMTSRAEYRLLLRQDNADQRLTKLGYEIGLISEERYEKLLEKERLIEEEIH 493

Query: 477 LLKSLVL-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            ++ + + TS+ + +   +++        T  E +  P+ S + L  I  + +     V 
Sbjct: 494 RVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPEDVA 553

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P ++ 
Sbjct: 554 QQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPASIG 613

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA +++LL+Y+
Sbjct: 614 QASRISGVSPADVSVLLVYL 633


>gi|225025383|ref|ZP_03714575.1| hypothetical protein EIKCOROL_02281 [Eikenella corrodens ATCC
           23834]
 gi|224941827|gb|EEG23036.1| hypothetical protein EIKCOROL_02281 [Eikenella corrodens ATCC
           23834]
          Length = 631

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/622 (46%), Positives = 394/622 (63%), Gaps = 6/622 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVR
Sbjct: 5   LYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ 
Sbjct: 65  ELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLF 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + 
Sbjct: 125 QQSVDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAK 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
           SL     + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ 
Sbjct: 185 SLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEG
Sbjct: 245 CWITHTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK 
Sbjct: 305 LTTNEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKT 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KG
Sbjct: 365 IQGLFFAGQINGTTGYEEAAAQGLLAGANAVQYIREQDPLLLRREQAYLGVLVDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK
Sbjct: 425 VNEPYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEAQWRMFNEKREAIEREIQRLK 484

Query: 480 SLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIE 534
           ++  T + L+      +  ++  +    ++ L  P+     L ++     +      VIE
Sbjct: 485 TMWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAEPECRLPENVIE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E    +  E   +P++ DYS +  LS E+++KL+  KP  + Q
Sbjct: 545 QVEIQVKYQGYIDRQNEEIDSRRDLETLRLPENIDYSKVKGLSAEVQQKLNQHKPETVGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+TPAA+ LL++++K+ 
Sbjct: 605 ASRISGVTPAAVALLMVHLKRG 626


>gi|20809124|ref|NP_624295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter tengcongensis MB4]
 gi|254479395|ref|ZP_05092728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
 gi|22095715|sp|Q8R6K9|MNMG2_THETN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 2; AltName: Full=Glucose-inhibited division
           protein A 2
 gi|20517804|gb|AAM25899.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Thermoanaerobacter tengcongensis MB4]
 gi|214034664|gb|EEB75405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
          Length = 633

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/622 (41%), Positives = 380/622 (61%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  +A+LG +T         I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVCVVGLGHAGSEAALASARLGLATVGFATNLDAIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY+  M+  +  Q+NLD+ Q E+
Sbjct: 67  LGGEMAVNTDKSLLQMRTLNTSKGPAVRSLRAQVDKKLYQANMKHTLERQKNLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  +V +  ++ +C   ++TTGTFLRG + IG++   +G  G  P+  L  
Sbjct: 127 VDILVENNKVVGVVTKLGAIYKCKACIITTGTFLRGRVIIGEVGFESGPSGLFPAKELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R  T TP R+D +T+ + K   Q  DE + PFSFM DKI   QI C +T 
Sbjct: 187 AIKRLGFKMMRFNTSTPPRVDKRTVDFSKMIMQPGDEVITPFSFMHDKIEIEQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +NI  + +Y+G+++  G RYCPSIEDK+++F  R+ HQIF+EPEG +T  
Sbjct: 247 TNEKTHKIIRDNIHRAPLYTGEVEGVGVRYCPSIEDKVMKFPHRDRHQIFVEPEGRDTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ ++ PE++Q + + TIPGLE   I+RP YAIEYD I+P +L  TLETK + GL+
Sbjct: 307 MYIQGLFSSFPEDLQMEILSTIPGLENAKIMRPAYAIEYDCIDPTQLKATLETKLVEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIG++IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAALKILGKPPLILDRSQAYIGILIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG ++G + E R ++F +   +       L ++++ 
Sbjct: 427 RMLTSRAEYRLILRQDNADFRLTEIGKEIGLVTEERYEKFLRKKIQLEKEMMRLPTVMVR 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  +      +    Y  L  P+   ++   + P         V E++ I  
Sbjct: 487 PTEEVNNFLISRGSTPLVSGVDLYTLLKRPEIDYKSTKFLDPTRPDDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++ K  E + IP+D DY  +  LSNE KEKLS ++P ++ QAS+I G
Sbjct: 547 KYEGYILKQLRQVEQFKAMENKKIPEDIDYYQVHGLSNEAKEKLSKIRPTSVGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLIY+++   K ++
Sbjct: 607 VSPADISVLLIYLQQMRRKRSD 628


>gi|56708268|ref|YP_170164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670739|ref|YP_667296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis FSC198]
 gi|224457388|ref|ZP_03665861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370751|ref|ZP_04986756.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875088|ref|ZP_05247798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81170542|sp|Q5NFM8|MNMG_FRATT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123359437|sp|Q14H30|MNMG_FRAT1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56604760|emb|CAG45838.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321072|emb|CAL09221.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568994|gb|EDN34648.1| glucose inhibited division protein A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841087|gb|EET19523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159495|gb|ADA78886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 627

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/621 (48%), Positives = 399/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYGYDVIVVGGGHAGVEAASASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGVMAKAIDMAGIQFRILNSRKGPAVRATRAQADRLLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +   + +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGAITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       RQI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDNPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNNETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G EK  I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFEKAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVA IN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVASINAAISIDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F           +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSNKACELGLLSKEDQQHFISKKNAIIENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQISELNLNLQDDAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  + ++    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIEKTATFEQKAIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|152991329|ref|YP_001357051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitratiruptor sp. SB155-2]
 gi|205375702|sp|A6Q5D5|MNMG_NITSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151423190|dbj|BAF70694.1| glucose inhibited division protein A [Nitratiruptor sp. SB155-2]
          Length = 625

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/621 (46%), Positives = 390/621 (62%), Gaps = 5/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  +A++G  T +IT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   KFDVIVIGGGHAGIEAALASARMGMKTLMITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D  GIQFR+LN  KGPAVRG R Q D + YR+ M+  +L+  NL+V Q  V
Sbjct: 62  LGGQMGLTTDKTGIQFRILNASKGPAVRGSRAQIDMDRYRIMMRTIVLNTPNLEVRQEMV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + +  +     ++     V++TTGTFLRG+IHIG++K  AGR G+  SN+L +
Sbjct: 122 DRLLIKGDAVVGVETNLKNVYHAKKVIVTTGTFLRGLIHIGEIKQEAGRAGEFASNALSD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S        GRLKTGT AR+D KTI + + E Q  DE  IPFSF TD+      Q+ C I
Sbjct: 182 SLKSLGLRLGRLKTGTCARIDAKTIDFSRMEVQPGDENPIPFSFRTDRKRFNPTQLPCYI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H IF+EP+ L  
Sbjct: 242 TYTNERTHEIIESNFHRAPLFTGQIEGVGPRYCPSIEDKIYRFRDKERHHIFVEPQTLEA 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG+ST+LP ++Q + IR++ GLE   ++R GYAIEYD+++P +L  TLETK I  
Sbjct: 302 TEYYINGMSTSLPPDVQLEMIRSVKGLEHAEVVRYGYAIEYDFVDPTQLKHTLETKSIKN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AGIN+A    + + +   R ++YIGV+IDDL +KG  E
Sbjct: 362 LYCAGQINGTTGYEEAAAQGLMAGINAALAIKEQEPLILGRDEAYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL P G KLG + E    +  +  ++      LLK+  
Sbjct: 422 PYRMFTSRAEFRLLLREDNADLRLMPYGHKLGLVDEETYMKMIRKKEQIEKGLDLLKNSF 481

Query: 483 LTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T    +   +S  ++GK          ++ P F+++ L  + P+ ++FS    E++ IE
Sbjct: 482 ITPNKETLELLSSLEEGKITDKTALVNVVARPTFTMEKLEVLVPEIQEFSEEAKEQILIE 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y   Q  + +++       IP+D D  ++  LSNE+KEKL   KP  L  AS+I 
Sbjct: 542 AKYHQYIQMQKEQIEKMHELMNVKIPEDLDIDAISGLSNEVKEKLKAHKPPTLFAASQIS 601

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G+TPAA+ +L IYIK +  + 
Sbjct: 602 GITPAAIEILHIYIKMHQKRR 622


>gi|294668652|ref|ZP_06733748.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309414|gb|EFE50657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 631

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/620 (46%), Positives = 395/620 (63%), Gaps = 8/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDVTLDGNRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSRLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLHTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYIREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR---KFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++ PDA+     +  V+E++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAQPETALADSVVEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL++++K+ 
Sbjct: 607 RISGVTPAAVTLLMVHLKRG 626


>gi|119896433|ref|YP_931646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azoarcus sp. BH72]
 gi|166222905|sp|A1K1Q4|MNMG_AZOSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119668846|emb|CAL92759.1| glucose inhibited division protein A [Azoarcus sp. BH72]
          Length = 634

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/617 (45%), Positives = 389/617 (63%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRKRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q         VVLT GTFL G+IH+G     AGR GD P+ SL   
Sbjct: 127 DLTVAGDRVTGVVTQIGLRFEAPAVVLTAGTFLNGLIHVGLEHYSAGRAGDPPAISLGQR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +     GRLKTGTP RLD ++I +     Q  D+ +  FSF+     +  Q+ C +T 
Sbjct: 187 LKELALPQGRLKTGTPPRLDARSIDFSVMTVQPGDDPVPVFSFLGSAAQHPAQLPCWMTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ H IFLEPEGL T  
Sbjct: 247 TNTRTHDVIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHNIFLEPEGLTTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLEIVRSIRGLENAHILRPGYAIEYDYFDPRNLKSSLETKSIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVQGREAWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F    +      + LK+ +  
Sbjct: 427 RMFTSRAEYRLQLREDNADLRLTEKGRELGLVDDVRWAAFCAKREAIERETARLKTSLAR 486

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
              +       +  K   +    +E L  P+ +  +L S+   P+  +    V+E+L+I 
Sbjct: 487 PDLIPVADQERVLGKTLEREARYFELLRRPETTYASLMSLPGAPEQPETDPQVVEQLEIA 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E  +    E   +P D DY+ +  LS E+++KL++ KP  + QA +I+
Sbjct: 547 AKYQGYIDRQQDEVAKQLQAESTRLPADLDYAEVRGLSKEVQQKLNLHKPETIGQAGRIQ 606

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++LLL+++K+ 
Sbjct: 607 GITPAAISLLLVWLKRR 623


>gi|294675620|ref|YP_003576235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter capsulatus SB 1003]
 gi|294474440|gb|ADE83828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter capsulatus SB 1003]
          Length = 620

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/615 (54%), Positives = 435/615 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  +A+LGA T L+T +   IG MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   KHFDVIVVGGGHAGTEAAHASARLGARTVLVTMRREAIGVMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+MG+ AD AGIQFR+LN +KGPAV+GPRTQADR+LYRLA+     +Q  LDV++GE
Sbjct: 62  AMDGVMGKAADRAGIQFRLLNRRKGPAVQGPRTQADRKLYRLAIAELCATQPLLDVVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         IS + + D S I   +VVLTTGTFL GVIHIG  + P GR+GD PS  L 
Sbjct: 122 VTDLLLAGTTISGVRLMDGSEIFAPSVVLTTGTFLNGVIHIGDQQSPGGRVGDRPSVPLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG++I WD  EKQ  DE  +  SF++     RQI CGIT
Sbjct: 182 QRLREIAPAVGRLKTGTPPRLDGRSIDWDSLEKQPGDEDPVMLSFLSTGPFVRQIACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I EN++ SA+Y G I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+ D
Sbjct: 242 HTNESTHEVIRENLQRSAMYGGHIEGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q +++++I GLE+  I++PGYAIEYDY++P+ L  TLE +   GL
Sbjct: 302 TVYPNGISTSLPADVQERYVQSIRGLERARILQPGYAIEYDYVDPRALKLTLELRDQEGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAG+N+A K+ + D + FSRTDSYIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGMVAGLNAASKALRRDPVTFSRTDSYIGVMIDDLVSRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP G+++GC+GE RQ+RF + +++    + +L  +VL
Sbjct: 422 YRMFTSRAEFRLFLRADNADQRLTPRGVEIGCVGEERQRRFDEKMEKMAAGKGILDGIVL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T     S  ++  QDG  R+A++ L++PD +   L    PD    +  +  +L IE+ YA
Sbjct: 482 TPGQAISLGLALNQDGVKRSAFQLLAFPDVTFGQLRESFPDLNAIAPDIATQLSIEALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP DFDY +L  LSNELK K S   P  L QAS+++G TP
Sbjct: 542 NYILRQQRDVDAMRRDENWEIPADFDYGALSGLSNELKMKFSAAAPRTLHQASQVDGATP 601

Query: 604 AALNLLLIYIKKNTV 618
           AAL+L+L  +++   
Sbjct: 602 AALSLILARLRQTKR 616


>gi|226941925|ref|YP_002796999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Laribacter hongkongensis HLHK9]
 gi|254811513|sp|C1D5H3|MNMG_LARHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226716852|gb|ACO75990.1| GidA [Laribacter hongkongensis HLHK9]
          Length = 628

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/623 (45%), Positives = 390/623 (62%), Gaps = 5/623 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  AA++G ST L+TH   T+G MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   EFDVIVVGGGHAGTEAALAAARMGRSTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D  GIQFR LN  KGPAVR  R QADR  Y+ A++  + +Q NL + Q  V
Sbjct: 66  LGGAMALATDMGGIQFRTLNASKGPAVRATRAQADRVRYKAAIRHMLENQPNLWLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + ++  + Q        TVVLT GTFL G IHIG      GR GD  +++L  
Sbjct: 126 DDLVMQGDRVAGAITQAGITFMSRTVVLTAGTFLSGKIHIGLENYTGGRAGDPAASTLGA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
               +    GRLKTGTP R+DG++I +   E Q  D+    FSF   + +  +Q+ C +T
Sbjct: 186 RLRDYALPVGRLKTGTPPRIDGRSIDFSVLEMQPGDDPAPVFSFRGSRDMHPQQLPCWVT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TNL TH II      S +++G I+  GPRYCPSIEDKI RF +R+ HQIFLEPEGL+T 
Sbjct: 246 HTNLRTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADRDSHQIFLEPEGLDTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  TLE+++++GL
Sbjct: 306 EIYPNGVSTSLPFDIQLAALRSMKGLENAHILRPGYAIEYDYFDPRALRHTLESRRVAGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R ++Y+GV++DDLT+ GV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGLLAGLNAARAARDEEGWYPGREEAYLGVLVDDLTTLGVNEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT  G +LG +G+ +   F +        R  LKS  +
Sbjct: 426 YRMFTSRAEFRLQLREDNADLRLTETGRRLGLVGDAQWDIFCRKRDAVAAERERLKSTWV 485

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIE 539
             + +S      +  +   +  +  E L  P      L ++        S  V E+++I+
Sbjct: 486 NPRLVSEEDARRVLGQPVEREYSLEELLRRPGVDYATLATLPAFGGEALSGAVAEQVEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E    +  E   IP  FD+S++  LS E+++KL++ +P  L QAS+I 
Sbjct: 546 VKYQGYIDRQHEEVARREATEHVRIPAAFDFSAVSGLSKEVQQKLALHRPETLGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           G+TPAA++LL +Y+K+     +E
Sbjct: 606 GVTPAAISLLHVYLKRAGAPKSE 628


>gi|167748064|ref|ZP_02420191.1| hypothetical protein ANACAC_02808 [Anaerostipes caccae DSM 14662]
 gi|167652056|gb|EDR96185.1| hypothetical protein ANACAC_02808 [Anaerostipes caccae DSM 14662]
          Length = 627

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/619 (42%), Positives = 378/619 (61%), Gaps = 5/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD++V+G GHAGCEAA  +A+LG  T   T    +I  M CNP IGG  KGHLV+E
Sbjct: 4   LEEFYDIVVVGAGHAGCEAALASARLGFKTICFTVSMDSIALMPCNPNIGGSSKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+++Y +AM + + + +NL V Q
Sbjct: 64  IDALGGEMGVNIDKTYIQSKMLNRSKGPAVHSLRAQADKKMYSMAMTQTMGNTKNLTVRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV    T+   ++ +     ++     V+LTTGT+L+     G +    G  G   +N 
Sbjct: 124 GEVTQILTQNGKVTGVKTYSGAVYHAKAVILTTGTYLKARCIYGDVSNETGPNGLQAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S      +  R KTGTPAR+D  +I ++K E+QF D++++PFSF    + I   QI 
Sbjct: 184 LTQSLKDLGIEMRRFKTGTPARIDKNSIDFNKMEEQFGDDKIVPFSFTNTREDIQRDQIS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETH II ENI  S ++SG I+  GPRYCPSIEDKIV+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHEIIRENIGRSPLFSGAIEGTGPRYCPSIEDKIVKFPDKNRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y  G+S++LPE++Q+   R++ GLE V IIR  YAIEYD IN  +L P+LE +K
Sbjct: 304 EYTNEMYVGGMSSSLPEDVQYAMYRSVTGLENVKIIRNAYAIEYDCINATQLKPSLEFRK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R+ +YIGV+IDDL +K 
Sbjct: 364 IGGLFSAGQFNGSSGYEEAAAQGLIAGINAARMIQGKESLVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I E R +   +         + L 
Sbjct: 424 TSEPYRMMTSRAEYRLLLRQDNADLRLSKIGYEMGLISEERYQNLLEKEARIEKEINRLS 483

Query: 480 SLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + + +       +S     +   + T  E +  P+ +   L  I PD  ++   V E++
Sbjct: 484 RVNVGASGKVQDLLSKCQSTELKSSATMAELIRRPELTYDMLSPIDPDRPEYPEDVREQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ + ++ K  EK+ IP+   Y  +  L  E  +KLS ++P ++ QAS
Sbjct: 544 NINIKYEGYIKRQLSQVRQFKRLEKKKIPEGIKYEDIGNLRIEAIQKLSKIRPASIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++PA +++LLIY+++
Sbjct: 604 RISGVSPADISVLLIYLEQ 622


>gi|83944970|ref|ZP_00957336.1| glucose-inhibited division protein A [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851752|gb|EAP89607.1| glucose-inhibited division protein A [Oceanicaulis alexandrii
           HTCC2633]
          Length = 630

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/613 (54%), Positives = 425/613 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIVIGGGHAGCEAA+ +A+LGA T L+THK STIG MSCNPAIGGLGKGHLVRE+D
Sbjct: 11  RPWDVIVIGGGHAGCEAASASARLGARTLLLTHKASTIGEMSCNPAIGGLGKGHLVREVD 70

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVADA+GIQFR+LN  KGPAVRGPRTQ+DR+LYR AMQ+ +  Q NL +++  
Sbjct: 71  ALDGVMGRVADASGIQFRLLNRSKGPAVRGPRTQSDRKLYREAMQQALSEQANLSIVEAA 130

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E      ++       R   VVLTTGTFL+GVIH G  +IPAGR G++P+N L 
Sbjct: 131 AEDLIIENGRCCGVIDGAGRAYRAGAVVLTTGTFLKGVIHRGHERIPAGRHGEAPANGLS 190

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +        GRLKTGTPARLDG TI WD+ E Q ADE  +PFSF+ D+I  RQI CGIT
Sbjct: 191 ETLYGLGLRMGRLKTGTPARLDGSTIHWDQLEMQAADETPVPFSFLNDQIHVRQIACGIT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF +R+ HQ+FLEPEGL+ D
Sbjct: 251 RTTEATHKIIADNLDQSAVYGGAISGRGPRYCPSIEDKVVRFADRSQHQVFLEPEGLDDD 310

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP+ +Q  F++TIPGLE V + R GYAIEYDY++P+EL   LE K ++GL
Sbjct: 311 TVYPNGISTSLPDAVQDAFLKTIPGLEDVKVRRYGYAIEYDYVDPRELSAALEVKAMAGL 370

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG N+A K++  D     R+++YIGVMIDDL ++GV EP
Sbjct: 371 FLAGQINGTTGYEEAAAQGLMAGFNAALKASGSDPFILDRSEAYIGVMIDDLITRGVTEP 430

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR DNAD RLT   + LG     R+  + +   +    R    +L L
Sbjct: 431 YRMFTSRAEYRLTLRADNADQRLTDKAIALGAASVSRETSWRQRQADLARAREQATTLTL 490

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        I   +DGK R+  E LSYPD    ++  I P+  +    V E+++I++ Y 
Sbjct: 491 TPAEAKRHGIKVNEDGKRRSVMELLSYPDIGWSDMVRIWPELGEIKPRVAEQVEIDAVYH 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    + +E   IP DFDY+ +  LSNE++EKL    P  L QA++IEG+TP
Sbjct: 551 GYLDRQQSDILAFRRDEGVRIPADFDYAQVGGLSNEVREKLIKASPDTLGQAARIEGVTP 610

Query: 604 AALNLLLIYIKKN 616
            AL  LL Y+K+ 
Sbjct: 611 GALTALLAYLKRR 623


>gi|154483916|ref|ZP_02026364.1| hypothetical protein EUBVEN_01622 [Eubacterium ventriosum ATCC
           27560]
 gi|149735407|gb|EDM51293.1| hypothetical protein EUBVEN_01622 [Eubacterium ventriosum ATCC
           27560]
          Length = 626

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/619 (42%), Positives = 380/619 (61%), Gaps = 5/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YDV+++G GHAGCEAA  +A+LG +T + T    +I  M CNP IGG  KGHLVRE+D
Sbjct: 6   ENYDVVIVGAGHAGCEAALASARLGLNTIVFTVSVDSIALMPCNPNIGGTSKGHLVRELD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + ENL + Q E
Sbjct: 66  ALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKQDYTREMRKTLENTENLTIRQAE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E  +I  +     +     +VVL TG +L+     G +    G  G   +N+L 
Sbjct: 126 VAKLLVEDGVIKGVETVSGATYYAKSVVLATGVYLKAKCIYGDVCQYTGPNGLMAANNLT 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
            S ++      R KTGTPAR+D K+I + K E+QF DER++PFSF TD   +   QI C 
Sbjct: 186 ASLIENGIKVRRFKTGTPARVDKKSIDFSKMEEQFGDERVVPFSFSTDPESVQKDQISCW 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II ENI  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL 
Sbjct: 246 LTYTNEKTHEIIRENINRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGLF 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LPE++Q+   +T+PGLE V I+R  YAIEYD I   +L P LE KKI 
Sbjct: 306 TNEMYLGGMSSSLPEDVQYAMYKTVPGLENVKIVRNAYAIEYDCIEYGQLLPNLEFKKIK 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NG++GYEEAAAQG++AGIN+AR     + I   R+ +YIGV+IDDL +K   
Sbjct: 366 GLFSAGQFNGSSGYEEAAAQGIIAGINAARYVQNKESIVLDRSQAYIGVLIDDLVTKESH 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT IG ++G + + R     +  +        L++ 
Sbjct: 426 EPYRMMTSRAEYRLLLRQDNADLRLTKIGYEVGLVPQERYNYVCEKEKMIEKEIERLENY 485

Query: 482 VL-TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +  +K + S   S+         T  E +  P+     +  +  + +  +  VIE++ I
Sbjct: 486 KVGANKEVQSVLESLGSTTLKTATTLAELIRRPELDYDKIKPLDKERQPLNYDVIEQVNI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y+ Y  RQ  + +  K  E + IP+ FDY+ + +L  E  +KL   +P N+ QAS+I
Sbjct: 546 NIKYSGYISRQKKQVENFKKIENKKIPEGFDYTKVNSLRKEAVQKLEFYRPINIGQASRI 605

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G++PA +++LLIY++++ 
Sbjct: 606 SGVSPADISVLLIYMEQHK 624


>gi|160882058|ref|YP_001561026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium phytofermentans ISDg]
 gi|189039336|sp|A9KLX8|MNMG_CLOPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160430724|gb|ABX44287.1| glucose inhibited division protein A [Clostridium phytofermentans
           ISDg]
          Length = 627

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/622 (43%), Positives = 380/622 (61%), Gaps = 5/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YDV+V+G GHAGCEAA   A+LG +T ++T     I  M CNP IGG  KGHLVREID
Sbjct: 6   EAYDVVVVGAGHAGCEAALACARLGFNTIMLTVSMDNIALMPCNPNIGGTSKGHLVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M++ + + +NL + Q E
Sbjct: 66  ALGGEMGKNIDKTYIQSKMLNQSKGPAVHSLRAQADKMDYCREMRKVVENTDNLTLRQDE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE N ++ + +    +  C  V+L TG +L      G+     G  G   +N L 
Sbjct: 126 VIDILTENNEVTGVKVYSGGVYPCKVVILCTGVYLNARCIYGETSHYTGPNGLPSANHLT 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
            S  K   +  R KTGTPAR+D ++I + K E+QF DE+++PFSF+   + I   QI C 
Sbjct: 186 ESLKKLGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDEKVVPFSFINNPEDIEKEQISCW 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +NI  S +YSG+IK  GPRYCPSIEDK+V+F +++ HQ+F+EPEG  
Sbjct: 246 LTYTNENTHDIIRDNIHRSPLYSGNIKGTGPRYCPSIEDKVVKFPDKDRHQVFIEPEGNY 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y +G+S++LPE++Q +  R++ GLE   I+R  YAIEYD INP +L  +LE   I+
Sbjct: 306 TNEMYISGMSSSLPEDVQFKMYRSVSGLENAKIVRNAYAIEYDCINPMQLKSSLEFMSIN 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF  GQ NG++GYEEAAAQGL+AGIN+ARK +  + I   R+ +YIGV+IDDL +K   
Sbjct: 366 GLFSGGQFNGSSGYEEAAAQGLMAGINAARKLSGKEPIVLDRSQAYIGVLIDDLVTKETH 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-S 480
           EPYRM TSRAEYR+ LR DNAD RLT IG ++G I E R +      +        L+ S
Sbjct: 426 EPYRMMTSRAEYRLILRQDNADQRLTRIGHEIGLISEDRYEHLIDKERMIKEEMMRLENS 485

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L+  SK +      +         T  E +  P+ +   L  +  +       VI +++I
Sbjct: 486 LIGASKEVQEILEGLGTTTLKTGTTLAELVRRPELTYAALAPLDKNREPLPEEVITQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  RQ  + ++ K  E + IP+D DYS +P+L  E K+KL+ +KP ++ QAS+I
Sbjct: 546 NFKYDGYIKRQEHQVEQFKKLEGKKIPEDLDYSDVPSLRIEAKQKLNQIKPSSVGQASRI 605

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G++PA +++LL+Y+++   K 
Sbjct: 606 SGVSPADISVLLVYLEQIRRKK 627


>gi|298370285|ref|ZP_06981601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281745|gb|EFI23234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 634

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 11  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 70

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 71  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQS 130

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 131 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 190

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 191 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T
Sbjct: 251 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFAAKDSHQIFLEPEGLTT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK + G
Sbjct: 311 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTVQG 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 371 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 431 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 490

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 491 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGARSSENLSAEVIEQVE 550

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 551 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 610

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 611 ISGVTPAAVALLMVHLKRG 629


>gi|331089220|ref|ZP_08338122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405772|gb|EGG85301.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 636

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/620 (42%), Positives = 377/620 (60%), Gaps = 11/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+EIDA
Sbjct: 14  QYDIAVVGAGHAGCEAALACARLGFKTVMFTVSVDSIALMPCNPNIGGSSKGHLVKEIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+R +  Q+NLD+ Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKSDYSKEMRRVLEEQDNLDIRQMEV 133

Query: 125 AGFNTEKN------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                +         I  +     ++  C  V+L TGT+L+     G++    G  G   
Sbjct: 134 TDIIADDPNESGIRKIKGVQTYSGAIYPCKAVILCTGTYLKARCIYGEISTQTGPNGLQS 193

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNR 236
           +N L +S         R KTGTPAR+D  +I + K E+Q  DER++PFSF TD   +   
Sbjct: 194 ANYLTDSLKSLGIKMYRFKTGTPARIDKNSIDFTKMEEQKGDERVVPFSFTTDPEDVQID 253

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+E
Sbjct: 254 QVSCWLTYTNETTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIE 313

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG++T+ +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE
Sbjct: 314 PEGIHTNEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLE 373

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K I GLF  GQ NG++GYEEAAAQG+VAGIN+ARK    + I   R+  YIGV+IDDL 
Sbjct: 374 FKNIEGLFSGGQFNGSSGYEEAAAQGIVAGINAARKLQGKEGIVIDRSQGYIGVLIDDLV 433

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K   EPYRM TSRAEYR+ LR DNAD RLT +G ++G I E R ++  +  +       
Sbjct: 434 TKESREPYRMMTSRAEYRLLLRQDNADQRLTKLGYEIGLISEERYEKLLEKERLIEEEIH 493

Query: 477 LLKSLVL-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            ++ + + TS+ + +   +++        T  E +  P+ S + L  I  + +     V 
Sbjct: 494 RVERVNIGTSEEVQNLLKTYESTPLTSGTTLAELIRRPELSYEKLAPIDKNRKNLPGDVA 553

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           +++ I   Y  Y  RQM + ++ K  E + IP+D +Y  + +L  E K+KL+ ++P ++ 
Sbjct: 554 QQVDINIKYDGYIKRQMRQVEQFKKLENKKIPEDINYDEIKSLRIEAKQKLNQIRPASIG 613

Query: 594 QASKIEGMTPAALNLLLIYI 613
           QAS+I G++PA +++LL+Y+
Sbjct: 614 QASRISGVSPADVSVLLVYL 633


>gi|313904718|ref|ZP_07838092.1| glucose inhibited division protein A [Eubacterium cellulosolvens 6]
 gi|313470511|gb|EFR65839.1| glucose inhibited division protein A [Eubacterium cellulosolvens 6]
          Length = 631

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/628 (39%), Positives = 372/628 (59%), Gaps = 9/628 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +I ++YDV+V+G GHAGCEAA  +A+LG +T + T    +I  M CNP +GG  KGHLVR
Sbjct: 3   VIEKTYDVVVVGAGHAGCEAALASARLGLNTIVFTVSVDSIAMMPCNPNVGGTSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL + 
Sbjct: 63  EIDALGGEMGKNIDRTFIQSKMLNRSKGPAVHSLRAQADKREYSQRMREVMENQENLTIK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    E  +   +     ++     VVL TG +L      G    P G  G   + 
Sbjct: 123 QAEVSEIIVEDGVCKGVKTFSGAIYHSKAVVLCTGVYLNSRCLYGDTVNPTGPNGLQTAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S      +  R KTGTPAR+D +TI + K E+Q  D  ++PFSF TD   +   Q+
Sbjct: 183 HLTDSLKANGIEIFRFKTGTPARIDKRTIDFSKMEEQKGDNPVVPFSFSTDPEDVQIEQV 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +NI  S +YSG I + GPRYCPSIEDK+V+F +++ HQ+F+EPE
Sbjct: 243 SCWLTHTNEKTHEIIRKNIDRSPLYSGKIHATGPRYCPSIEDKVVKFADKDSHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y +G+S+++PE++Q    R++PGLE   I+R  YAIEYD INP +L  +LE K
Sbjct: 303 GRYTNEMYIDGMSSSMPEDVQDAMYRSVPGLENAKIVRNAYAIEYDCINPIQLDASLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF  GQ NG++GYEEAAAQG++AG+N+A +    + +   R+++YIGV+IDDL +K
Sbjct: 363 KIKGLFSGGQFNGSSGYEEAAAQGIIAGLNAALEVKGEEPVILDRSEAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RL   G + G + +   ++     ++       +
Sbjct: 423 QTFEPYRMMTSRAEYRLLLRQDNADLRLRKYGHRAGLVSDEEYEKTLLKEKQIKEEIERV 482

Query: 479 KSLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           ++  +         L S + +  + G   +  E +  P+ + + L  I     +  +   
Sbjct: 483 ENTYVGQTEKVQKFLVSHNSTELKSGS--SLAELIRRPELNYEMLAEIDEARPELPAATA 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  RQ+ + +  K +E R IP   +Y  +P+L  E ++KL   +P N+ 
Sbjct: 541 EQVSIHIKYEGYIKRQLKQVEAFKKKEARKIPASINYDDVPSLRIEARQKLEQYRPMNIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLN 621
           QAS+I G++P+ +++L++Y++    KL 
Sbjct: 601 QASRISGVSPSDISVLMVYLESIGKKLE 628


>gi|254977336|ref|ZP_05273808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-66c26]
 gi|255094667|ref|ZP_05324145.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile CIP 107932]
 gi|255316420|ref|ZP_05358003.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-76w55]
 gi|255519080|ref|ZP_05386756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-97b34]
 gi|255652263|ref|ZP_05399165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-37x79]
 gi|260685217|ref|YP_003216502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile CD196]
 gi|260688876|ref|YP_003220010.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile R20291]
 gi|306521978|ref|ZP_07408325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-32g58]
 gi|260211380|emb|CBA67034.1| glucose inhibited division protein A [Clostridium difficile CD196]
 gi|260214893|emb|CBE07698.1| glucose inhibited division protein A [Clostridium difficile R20291]
          Length = 631

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/614 (42%), Positives = 371/614 (60%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDA
Sbjct: 8   KYDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV
Sbjct: 68  LGGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N++  +  +     +   V+L TG +L   I++G++    G      +  L +
Sbjct: 128 VEILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I  +Q  C +TR
Sbjct: 188 SLVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKKQEPCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  
Sbjct: 248 TTEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF
Sbjct: 308 MYIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R +RF       +     LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVDKEFERLKNERVT 487

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESS 541
            K ++S              + YEFL  P+ + + L  +   A    S  V E+  I + 
Sbjct: 488 PKEVNSLLEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGEDVSREVKEQCVIITK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+I G+
Sbjct: 548 YEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLIY+++
Sbjct: 608 SPADISVLLIYLEQ 621


>gi|301299780|ref|ZP_07206022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852593|gb|EFK80235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 637

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/623 (43%), Positives = 378/623 (60%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP+IGG  KG +VREID
Sbjct: 10  KDYDVIVVGAGHAGCEAALASARMGNETLLITINLEMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y + M+  I    +L + QG 
Sbjct: 70  AMGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTIEQTPHLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +V    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIIEDGEVKGVVTNTGACYGAKSVVLTTGTAARGKIIIGELMYSSGPNNTQPALELS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            +  K  F+  R KTGTP R+DG TI +DKTE+Q  D     FS+ +          Q+ 
Sbjct: 190 KNLAKLGFELKRFKTGTPPRVDGNTIDYDKTEEQPGDVEPNHFSYESKDEDYLKVKDQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNEYTHKIIQDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFSDKPRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST+LPEE+Q + +R+I GLE   ++RPGYAIEYD ++P +L PTLETK 
Sbjct: 310 RNTDEYYVQGLSTSLPEEVQQEMVRSIDGLEHAEMMRPGYAIEYDVVSPYQLRPTLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQ NGT+GYEEAA QG +AG+N+ R++  L+ I   R+D+YIGVMIDDL +KG
Sbjct: 370 IKGLYTAGQTNGTSGYEEAAGQGFIAGVNAGRRAKGLEEITLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R   F +   +    +  L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYAAFEEKKAQIEAEKQRLS 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            + +      +  +    D + +    A EFL  P  + Q+L    P   +     VIE+
Sbjct: 490 KIRIKPNAEVNAFVETHGDRELKDGVLATEFLRRPYVTYQDLLKFIPAPAEPLDRRVIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  ++  + +++K  E + IP   DYS +  ++ E ++KL+ ++P  L QA
Sbjct: 550 IEIQFKYEGYIKKEYAKVEKLKRMEAKKIPARIDYSRIEGIATEAQQKLAKIQPETLAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+ PA L++L +YI++  +
Sbjct: 610 GRISGVNPADLSILAVYIEQGKI 632


>gi|90961108|ref|YP_535024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus salivarius UCC118]
 gi|227892407|ref|ZP_04010212.1| glucose-inhibited division protein A [Lactobacillus salivarius ATCC
           11741]
 gi|122449445|sp|Q1WVH6|MNMG_LACS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|90820302|gb|ABD98941.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Lactobacillus salivarius UCC118]
 gi|227865814|gb|EEJ73235.1| glucose-inhibited division protein A [Lactobacillus salivarius ATCC
           11741]
 gi|300214039|gb|ADJ78455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Lactobacillus
           salivarius CECT 5713]
          Length = 637

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/623 (43%), Positives = 378/623 (60%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP+IGG  KG +VREID
Sbjct: 10  KDYDVIVVGAGHAGCEAALASARMGNETLLITINLEMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y + M+  I    +L + QG 
Sbjct: 70  AMGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTIEQTPHLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +V    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIIEDGEVKGVVTNTGACYGAKSVVLTTGTAARGKIIIGELMYSSGPNNTQPALELS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            +  K  F+  R KTGTP R+DG TI +DKTE+Q  D     FS+ +          Q+ 
Sbjct: 190 KNLAKLGFELKRFKTGTPPRVDGNTIDYDKTEEQPGDVEPNHFSYESKDEDYLKVKDQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNEYTHKIIQDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFSDKPRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST+LPEE+Q + +R+I GLE   ++RPGYAIEYD ++P +L PTLETK 
Sbjct: 310 RNTDEYYVQGLSTSLPEEVQQEMVRSIDGLEHAEMMRPGYAIEYDVVSPYQLRPTLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQ NGT+GYEEAA QG +AG+N+ R++  L+ I   R+D+YIGVMIDDL +KG
Sbjct: 370 IKGLYTAGQTNGTSGYEEAAGQGFIAGVNAGRRAKGLEEITLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R   F +   +    +  L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYAAFEEKKAQIEAEKQRLS 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            + +      +  +    D + +    A EFL  P  + Q+L    P   +     VIE+
Sbjct: 490 KIRIKPNAEVNAFVEAHGDRELKDGVLATEFLRRPYVTYQDLLKFIPAPAEPLDRRVIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  ++  + +++K  E + IP   DYS +  ++ E ++KL+ ++P  L QA
Sbjct: 550 IEIQFKYEGYIKKEYAKVEKLKRMEAKKIPARIDYSRIEGIATEAQQKLAKIQPETLAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I G+ PA L++L +YI++  +
Sbjct: 610 GRISGVNPADLSILAVYIEQGKI 632


>gi|170760523|ref|YP_001788984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A3 str. Loch Maree]
 gi|205831525|sp|B1KUB1|MNMG_CLOBM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169407512|gb|ACA55923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 625

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/618 (43%), Positives = 387/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMVEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGIGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAGIN+  K    D +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLVAGINAVLKIKGKDPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G ++G + E R  ++    +        +K + +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTEMGYRIGLVKEDRYNKYLNRKKNVENEIERIKKVQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKKEINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPNLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +YS +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYENRLIPKSINYSDIKGLRIEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|241759087|ref|ZP_04757198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria flavescens SK114]
 gi|241320689|gb|EER56942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria flavescens SK114]
          Length = 631

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 393/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDITLDGDRISGVMTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +  FS   + ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGHKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++     +      VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAEPECRLPENVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGITPAAVALLMVHLKRG 626


>gi|255657632|ref|ZP_05403041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-23m63]
 gi|296452687|ref|ZP_06894378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP08]
 gi|296880061|ref|ZP_06904030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP07]
 gi|296258469|gb|EFH05373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP08]
 gi|296428928|gb|EFH14806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile NAP07]
          Length = 631

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/614 (42%), Positives = 369/614 (60%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDA
Sbjct: 8   KYDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV
Sbjct: 68  LGGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N++  +  +     +   V+L TG +L   I++G++    G      +  L +
Sbjct: 128 VEILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I   Q  C +TR
Sbjct: 188 SLVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKEQEPCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  
Sbjct: 248 TTEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF
Sbjct: 308 MYIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R +RF             LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVEKEFERLKNERVT 487

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESS 541
            K ++S              + YEFL  P+ + + L  +   A    S  V E+  I + 
Sbjct: 488 PKEVNSLLEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGEDVSREVKEQCVIITK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+I G+
Sbjct: 548 YEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLIY+++
Sbjct: 608 SPADISVLLIYLEQ 621


>gi|163859298|ref|YP_001633596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella petrii DSM 12804]
 gi|205831490|sp|A9IJ48|MNMG_BORPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163263026|emb|CAP45329.1| glucose-inhibited division protein A [Bordetella petrii]
          Length = 639

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/625 (47%), Positives = 395/625 (63%), Gaps = 13/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+D
Sbjct: 5   REFDVIVVGGGHAGTEAALAAARIGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q  L + Q  
Sbjct: 65  ALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYRKAIRSRLENQPGLWIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+ SL 
Sbjct: 125 VDDLMVEGDRVVGAVTQIGLKFRGRTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPATSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIECG 241
               +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+ +  +  RQ+ C 
Sbjct: 185 QRLKELQLPQGRLKTGTPPRIDGRTIDYSVLEEQPGDLDPVPVFSFLGNAAMHPRQLPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL+
Sbjct: 245 ITHTNARTHDIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLD 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+LP ++Q   I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK I 
Sbjct: 305 THEVYPNGVSTSLPFDVQWDLIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAIG 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG N+A ++   D     R ++Y+GV++DDL ++GV 
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLLAGANAALQALDRDTWTPRRDEAYLGVLVDDLVTRGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R   F++           LKS 
Sbjct: 425 EPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVDDARWDAFSRKRDAVAAEVERLKST 484

Query: 482 VLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
            +  +N    ++  +  K   +  +  + L  P  S   L                    
Sbjct: 485 WVNPRNFPAETAEPLLGKAIEREYSLSDLLKRPAVSYAALMRARNADGSLLAGPGVTDDD 544

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
           ++ E+++I+  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +P 
Sbjct: 545 ILAEQVEIQVKYAGYIARQQDEVQKHLAHEQQRIPADIDYDAVSSLSFEVRQKLKTHRPE 604

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G+TPAA++LLLI++K+
Sbjct: 605 TIGQAARISGVTPAAISLLLIHLKR 629


>gi|161870869|ref|YP_001600043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis 053442]
 gi|161596422|gb|ABX74082.1| glucose inhibited division protein A [Neisseria meningitidis
           053442]
          Length = 642

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|261380643|ref|ZP_05985216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria subflava NJ9703]
 gi|284796623|gb|EFC51970.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria subflava NJ9703]
          Length = 631

 Score =  777 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/620 (46%), Positives = 391/620 (63%), Gaps = 8/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S      +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR---KFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++ PDA+     +  V+E++
Sbjct: 488 YTPQKLAEEEQLRVFGQKLSREANLHDLLRRPNLDYATLMTL-PDAQPETALADSVVEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL++++K+ 
Sbjct: 607 RISGVTPAAVALLMVHLKRG 626


>gi|39998553|ref|NP_954504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter sulfurreducens PCA]
 gi|81170544|sp|Q746Q4|MNMG_GEOSL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39985500|gb|AAR36854.1| glucose inhibited division protein A [Geobacter sulfurreducens PCA]
 gi|298507495|gb|ADI86218.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-
           formylglycinetransferase/reductase [Geobacter
           sulfurreducens KN400]
          Length = 627

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/620 (47%), Positives = 386/620 (62%), Gaps = 3/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + YDVIV G GHAGCEAA  AA++G  T L+T     I  MSCNPAIGGL KGHLV+E
Sbjct: 6   YEKQYDVIVAGAGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGLAKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  DA GIQ+R+LN +KGPAVR  R QAD++LYRL M+  +  QE+L + Q
Sbjct: 66  IDALGGEMGKNIDATGIQYRILNTRKGPAVRASRAQADKQLYRLRMKHVMEEQEHLSLKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV G   E   +  +V +        TV+LTTGTF+RG+IH+G    P GR GD PS  
Sbjct: 126 GEVTGLVVEDGRVRGVVTKVGVRFLGKTVILTTGTFMRGLIHVGLTNYPGGRAGDLPSVG 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTPARLDG TI + + E Q+ D+  +PFSF T++I   Q+ C 
Sbjct: 186 LSDQLRDLGFTVGRLKTGTPARLDGNTIDFSRLEPQYGDDPPVPFSFSTERIDRPQLPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH II   +  S +YSG I+  GPRYCPSIEDK++RF +++ HQ FLEPEG +
Sbjct: 246 IAYTNERTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVMRFPDKDRHQSFLEPEGRD 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YP+G+ST+LP +IQ++  R+I GLE V I+RP YAIEYDY++P +L  +LETK I 
Sbjct: 306 TVEYYPSGLSTSLPIDIQYRLYRSIEGLENVEIMRPAYAIEYDYVDPIQLHTSLETKLIR 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A +    + +   R ++YIGVMIDDL + G  
Sbjct: 366 NLYHAGQINGTSGYEEAAGQGLMAGINAALRVQGEEPLVLGRDEAYIGVMIDDLVTLGTR 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL   G  +G + +   + F +  +        L++ 
Sbjct: 426 EPYRMFTSRAEYRLLLREDNADLRLRERGHAVGLVRDEEYRLFLEKRERIGAELERLRTA 485

Query: 482 VLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L       + +            T  + L  PD + + L  I P A      V E+++I
Sbjct: 486 KLLPSEADPSFLETYGMTDLRNALTFEQLLRRPDITYEELSQIDPVAGMVPPSVKEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ +    +  E   IP D DY+ +P LS E++EKL    P  L QAS+I
Sbjct: 546 QIKYQGYIERQLDQVARARKLEGTRIPDDLDYTVIPGLSAEVREKLLRFLPDTLGQASRI 605

Query: 599 EGMTPAALNLLLIYIKKNTV 618
           +G+TPAA+ +L + IK  + 
Sbjct: 606 QGVTPAAVGILSVAIKSRSA 625


>gi|205831541|sp|A9M3R4|MNMG_NEIM0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 628

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|118602124|ref|YP_903339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|205375713|sp|A1AVB1|MNMG_RUTMC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118567063|gb|ABL01868.1| glucose inhibited division protein A [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 624

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/618 (48%), Positives = 398/618 (64%), Gaps = 2/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SY VIVIGGGHAG EAA  +A++G  T LI+H   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 7   KSYSVIVIGGGHAGTEAALSSARMGVCTLLISHNIETLGQMSCNPAIGGIGKGHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G+M R  D +GIQFR LN  KGPAVR  R QADR LY+  ++  + +Q+NL + Q  
Sbjct: 67  AMGGIMARAIDKSGIQFRTLNASKGPAVRATRAQADRILYKAQIRYTLENQDNLSLFQQA 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + I  +V Q         V+LT+GTFL GVIHIG+     GR GD+PSN+L 
Sbjct: 127 VDDLIIEHDQIKGVVTQMGLAFMADKVILTSGTFLGGVIHIGQRNFQGGRAGDAPSNALS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECGI 242
                +D    RLKTGTP RLD +T+ +   + Q  D  L  FSFM   +   RQI C I
Sbjct: 187 GKLRSYDLRVSRLKTGTPPRLDNRTLNYSLMQVQPGDTPLPTFSFMGVKEDHPRQIPCYI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I + +K S +++G+I+   PRYCPSIEDK+VRF ER+ HQIF+EPEGL T
Sbjct: 247 THTNEKTHDLIRDGLKDSPMFTGNIEGISPRYCPSIEDKVVRFSERDSHQIFVEPEGLTT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VYPNG+ST+L  E+Q  FIR+I G EK +IIRPGYAIEYD+ +P+ L  TLE KKISG
Sbjct: 307 NEVYPNGVSTSLSYEVQLNFIRSIKGFEKAHIIRPGYAIEYDFFDPRGLKQTLEVKKISG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+A    + D     R +SYIGVM+DDL +KG  E
Sbjct: 367 LYFAGQINGTTGYEEAAAQGLLAGVNAACAILERDAWLPKRNESYIGVMVDDLITKGANE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP    LG I E   + F    +     ++ LK+  
Sbjct: 427 PYRMFTSRAEYRLLLREDNADERLTPKARDLGLISEVCWQSFQVKYEAITQEKNRLKNTW 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESS 541
           + + +  +  +  +      +  E L  P    Q L  I         + +I  ++ +  
Sbjct: 487 IQASDTQAGVVLNQNLNHEYSLLELLKRPKIDYQILSQIESGKPFLTDATLINSIENQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ+ E ++ +  E  ++  + DY S+ ALS+E+++KL + KP  + QAS+I+G+
Sbjct: 547 YAGYIKRQLEEIEKYRKNENTILSVNIDYDSIKALSSEVRQKLELHKPETIGQASRIQGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPA++++LL+Y+K    K
Sbjct: 607 TPASISILLVYLKTYQSK 624


>gi|126701302|ref|YP_001090199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile 630]
 gi|255102893|ref|ZP_05331870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile QCD-63q42]
 gi|255308713|ref|ZP_05352884.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium difficile ATCC 43255]
 gi|122973577|sp|Q181S8|MNMG_CLOD6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115252739|emb|CAJ70584.1| transfer RNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG (Glucose-inhibited division protein A) [Clostridium
           difficile]
          Length = 631

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/614 (42%), Positives = 370/614 (60%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA   A++G  T +IT    +I  M CNP+IGG GKG LV+EIDA
Sbjct: 8   KYDVIVVGAGHAGCEAALATARMGYKTLIITMSLDSIALMPCNPSIGGTGKGQLVKEIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  + NLD+   EV
Sbjct: 68  LGGQMGLNIDKTYIQSRMLNTAKGPAVHSLRAQADKFKYHEEMKKTLEDEPNLDIAMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N++  +  +     +   V+L TG +L   I++G++    G      +  L +
Sbjct: 128 VEILHEGNVVIGVGTKLGCSFKSKAVILATGVYLNSKIYMGEVAFYEGPNALGYAKYLTD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTPAR+   +I +     Q  DE++ PFSFM + I  +Q  C +TR
Sbjct: 188 SLVELGLRMRRFKTGTPARVHRDSIDFSVMSLQEGDEKVTPFSFMNENIEKKQEPCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I++N+K SA+YSG I+S GPRYCPSIEDK+VRF ++  HQ+F+EPEGLNT  
Sbjct: 248 TTEETQKVILDNLKRSAMYSGVIESTGPRYCPSIEDKVVRFSDKTSHQLFIEPEGLNTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  GIST+LP E+Q    +TI GLE   I+RP YAIEYD ++P +L  +LE K +  LF
Sbjct: 308 MYIQGISTSLPFEVQLDMYKTIKGLENCKIMRPAYAIEYDCVDPTQLKISLEIKGVENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLMAGINAVRKIEGKEPFVLDRSEAYIGVLLDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R +RF             LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTQKGYDIGLVKKDRYERFLNKKAAVEKEFERLKNERVT 487

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESS 541
            K ++S              + YEFL  P+ + + L  +   A    S  V E+  I + 
Sbjct: 488 PKEVNSLLEEKGATPIKVGISLYEFLKRPEVTYELLEELGKGAGDDVSREVKEQCVIITK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E + + +  +YSS+  L  E ++KL  +KP ++ QAS+I G+
Sbjct: 548 YEGYIEKQLKQIDQFKKLENKKLDEKINYSSIEGLRLEARQKLDDIKPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLIY+++
Sbjct: 608 SPADISVLLIYLEQ 621


>gi|299133194|ref|ZP_07026389.1| glucose inhibited division protein A [Afipia sp. 1NLS2]
 gi|298593331|gb|EFI53531.1| glucose inhibited division protein A [Afipia sp. 1NLS2]
          Length = 624

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/617 (55%), Positives = 436/617 (70%), Gaps = 1/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  + DVIV+GGGHAGCEAAA +A+ GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRATLDVIVVGGGHAGCEAAAASARFGAKTALLTHRFATIGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR+AD  GIQFRVLN +KGPAVRGPR Q DR LY  AMQ EI    NL VI+
Sbjct: 61  IDALDGLMGRMADRGGIQFRVLNRRKGPAVRGPRAQIDRALYATAMQGEIRETPNLTVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      E   I+ + + D     C  VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADELLLENGRIAGLKLADGREFACRAVVITTGTFLRGIIHLGEKNWPAGRIDEAPAVG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTPARLDG TI WD  E+Q  D+   PFS +TDKIT  Q+ECG
Sbjct: 181 LSGSFERIGFTLGRLKTGTPARLDGTTIDWDAVERQPGDDPAEPFSTLTDKITIPQVECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S +YSG IKS GPRYCPSIEDKIVRFG+R+ HQ+FLEPEGL 
Sbjct: 241 ITRTTEATHELIRANVHRSPMYSGQIKSTGPRYCPSIEDKIVRFGDRDSHQVFLEPEGLT 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE+  +IRPGYAIEYD+++P+EL PTLETK++ 
Sbjct: 301 DSTVYPNGISTSLPEEVQKAILTTIPGLERTRMIRPGYAIEYDHVDPRELAPTLETKRVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N+AR +   +   F R D Y+GVMIDDLTS+G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLVAGLNAARMAGGGEGAVFDRADGYLGVMIDDLTSRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LG +G RR+  FA  +Q  N  +   KSL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADRRLTERGIALGIVGSRRETSFAAKMQALNAAKDAAKSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT        +S  +DG+ R+A+E L+YP+    ++  I P   +    + E ++I++ 
Sbjct: 481 SLTPTEGIRHGLSLNRDGQRRSAFELLAYPEIGWADVARIWPQLAEVPPAIAEHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +    + +E  ++    DY+ +P LSNE ++KL   +P  + QA++IE M
Sbjct: 541 YDVYLARQAADVSAFRRDEALVL-TGVDYAEVPGLSNEARQKLQTAQPRTIGQAARIEAM 599

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAAL +L  Y+++ + 
Sbjct: 600 TPAALGILAAYLRRQSR 616


>gi|117619063|ref|YP_858690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|166222903|sp|A0KQY9|MNMG_AERHH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117560470|gb|ABK37418.1| glucose-inhibited division protein A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 629

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/622 (44%), Positives = 392/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YHEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M R  D  GIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q
Sbjct: 63  VDALGGIMARAIDLGGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +
Sbjct: 123 QACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +      RLKTGTP R+D +++     + Q+ D+    FSF+ D   + RQ+ C
Sbjct: 183 LAQRLRELPLRIDRLKTGTPPRIDARSVDLSVMQAQYGDDPRPVFSFIGDASQHPRQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YVTHTNERTHEVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G E  +I RPGYAIEYD+ +P++L   +E+K I
Sbjct: 303 TTHELYPNGISTSLPFDVQVQIVRSVRGFENAHITRPGYAIEYDFFDPRDLKANMESKCI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+  ++ + D     R  +YIGVM+DDL++ G 
Sbjct: 363 PNLFFAGQINGTTGYEEAAAQGLLAGLNAGLRAQEKDAWHPRRDQAYIGVMMDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S
Sbjct: 423 REPYRMFTSRAEYRLLLREDNADLRLTGIGRELGLVDDERWGKFNAKMEQVEQERQRMRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
             +  ++ S  +++        + ++  E L  P+ +   L +I             +++
Sbjct: 483 TWIHPQHPSLEAVNALVNTPLTREQSLEELLRRPEVTYDALMAIEGVGPALPDTAAADQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  + QAS
Sbjct: 543 EIQIKYAGYIERQHDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPQTIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK+ +
Sbjct: 603 RISGITPAAISILLVHLKKHGL 624


>gi|300115603|ref|YP_003762178.1| glucose inhibited division protein A [Nitrosococcus watsonii C-113]
 gi|299541540|gb|ADJ29857.1| glucose inhibited division protein A [Nitrosococcus watsonii C-113]
          Length = 629

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/618 (46%), Positives = 389/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VI++GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIIVGGGHAGTEAALAAARQGVRTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM   AD AGI FR+LN +KGPAVR  R QADR LY+  +++ +  Q  L + Q  V
Sbjct: 66  LGGLMAHAADQAGIHFRMLNARKGPAVRATRVQADRALYKAVVRKALEQQPYLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  Q         VVLT GTFL G IH+G      GR GD P+N+L +
Sbjct: 126 TDLVVKGEQVVGVRTQLGLTFYAPAVVLTVGTFLGGRIHVGLTNHEGGRAGDPPANALSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+     + Q + C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDDPVPVFSFLGSAEDHPQQVSCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTNL TH II  ++  S IYSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTNLRTHEIIRASLDRSPIYSGEIEGTGPRYCPSIEDKVVRFSDKTSHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EIYPNGISTSLPFDVQVALVRSIQGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+N+  +    +     R ++YIGV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLIAGLNAGLQVQGKEPWYPRRDEAYIGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTPIG +LG + E R +RF    +        L    +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPIGRELGLVDEARWRRFNTKWKAIERENQRLVQQRI 485

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               ++     ++  +   +     E L  P  S + L  +  +       V E++ I++
Sbjct: 486 EPGKIAEGEAITLLGEPLRREYRLIELLRRPHISYEKLMRLIGEPMVVEPAVAEQIAIQA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ +E    +  E   +P DF+Y  +  LS E++EKL+ ++P  L QA++I G
Sbjct: 546 KYAGYIERQQLEIARQQRHESLRLPLDFNYYQVRGLSVEVQEKLARVQPVTLGQAARIPG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLL+Y+K+  V
Sbjct: 606 VTPAAISLLLVYLKRARV 623


>gi|33594724|ref|NP_882367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella parapertussis 12822]
 gi|81170528|sp|Q7W2I1|MNMG_BORPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33564800|emb|CAE39742.1| glucose inhibited division protein A [Bordetella parapertussis]
          Length = 639

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/627 (47%), Positives = 402/627 (64%), Gaps = 13/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR AM+  + +Q NL + Q
Sbjct: 63  VDALGGAMAIATDEAGIQFRILNSSKGPAVRATRVQADRVLYRNAMRARLENQPNLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NS
Sbjct: 123 QAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIE 239
           L     +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ 
Sbjct: 183 LGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEG
Sbjct: 243 CWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK 
Sbjct: 303 LNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKA 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++G
Sbjct: 363 ISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++           LK
Sbjct: 423 VTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK 482

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
           S  +  + L   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 483 STWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|225386361|ref|ZP_03756125.1| hypothetical protein CLOSTASPAR_00105 [Clostridium asparagiforme
           DSM 15981]
 gi|225047543|gb|EEG57789.1| hypothetical protein CLOSTASPAR_00105 [Clostridium asparagiforme
           DSM 15981]
          Length = 632

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/627 (41%), Positives = 378/627 (60%), Gaps = 9/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD++V+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLVRE
Sbjct: 4   LEETYDIVVVGAGHAGCEAALACARLGMETIMFTVSVDSIALMPCNPNVGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + E+L V Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQEYSRQMRRTLENTEHLTVRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E  +I  +     ++ R   VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVSELVVEDGVIKGVKTFSGAVYRAKAVVLCTGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L  S      +  R KTGTPAR+D ++I + + E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTESLRANGIEMFRFKTGTPARVDKRSIDFSRMEEQFGDQRVVPFSFSTDPESVQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETHRII EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHRIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKGRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+ GLEKV I+R  YAIEYD IN  +L  TLE KK
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQYAMYRTVAGLEKVKIVRNAYAIEYDCINSLQLKATLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+A K    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IGGLFSGGQFNGSSGYEEAAVQGFMAGVNAAMKIMGKEQIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   +R     ++       L 
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLRGIGHEIGLVSDEEYERMLAKRRQIEEEIRRLG 483

Query: 480 SLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            + +         L   + +  + G   T  E +  P+ +   L  + PD  +    V E
Sbjct: 484 KVNIGAGDLVQNFLEEHNSTLLKSGI--TLAELVKRPELNYGVLACLDPDRPELPEDVQE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ IE  Y  Y  RQM +  + K  E R +P+ F+Y  + +L  E  +KL+ ++P  + Q
Sbjct: 542 QVNIEIKYEGYIKRQMQQVAQFKKLEGRKLPEAFEYGQVKSLRREAVQKLNQVQPATVGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLN 621
           AS+I G++PA +++LL+++++   K +
Sbjct: 602 ASRISGVSPADISVLLVHLEQMKGKES 628


>gi|153811976|ref|ZP_01964644.1| hypothetical protein RUMOBE_02369 [Ruminococcus obeum ATCC 29174]
 gi|149831875|gb|EDM86961.1| hypothetical protein RUMOBE_02369 [Ruminococcus obeum ATCC 29174]
          Length = 631

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 382/627 (60%), Gaps = 9/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++ D++V+G GHAGCEA+   A+LG  T + T    +I  M CNP +GG  KGHLV+E
Sbjct: 6   LEKTCDIVVVGAGHAGCEASLACARLGLDTVMFTVSVDSIALMPCNPNVGGSSKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +QENL + Q
Sbjct: 66  LDALGGEMGKNIDKTFIQSKMLNSSKGPAVHSLRAQADKQAYSTEMRKTLENQENLTIKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E+  I+ + +   ++  C  VVL TGT+L+     G +    G  G   +N 
Sbjct: 126 GEVTKLLVEEGKITGVQLYSGAVYHCQAVVLCTGTYLKARCIYGDVSNYTGPNGLQAANY 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S  +   +  R KTGTPAR+ G TI + K E+QF DER++PFSF TD   +  +Q  
Sbjct: 186 LTDSLKELGIEMFRFKTGTPARIAGNTINYSKMEEQFGDERVVPFSFSTDPESVQIQQKS 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG
Sbjct: 246 CWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKKRHQVFIEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q +   ++PGLE   I++  YAIEYD INP++L+PTLE KK
Sbjct: 306 LYTNEMYIGGMSSSLPEDVQDEMYHSVPGLEHAKIVKNAYAIEYDCINPRQLYPTLEFKK 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+++YIGV+IDDL +K 
Sbjct: 366 IKGLFSGGQFNGSSGYEEAAAQGLIAGINAAMEVKGREQLVLDRSEAYIGVLIDDLVTKE 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL   G ++G I E   +   +  +         +
Sbjct: 426 NHEPYRMMTSRAEYRLLLRQDNADLRLRKKGYQVGLIDEETYQAVLRKEEAIQKEIERTE 485

Query: 480 SLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +       K L     +  + G   T  E +  P+ + ++L  I  +  +    V +
Sbjct: 486 HATIGGTPEVQKLLEEKGSTLLKSGT--TIAELIRRPELNYEDLAPIDKERPELPWDVKQ 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I   Y  Y  RQ+ + ++ K  E + IP+D DY  + +L  E ++KL   +P ++ Q
Sbjct: 544 QVEINLKYEGYIKRQLKQVEQFKKLEAKKIPEDLDYEKVGSLRIEARQKLEEYRPISIGQ 603

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLN 621
           AS+I G++PA +++LL+Y+++     N
Sbjct: 604 ASRISGVSPADISVLLVYLEQYRRNSN 630


>gi|93005980|ref|YP_580417.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter cryohalolentis K5]
 gi|122415453|sp|Q1QBM0|MNMG_PSYCK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|92393658|gb|ABE74933.1| glucose inhibited division protein A [Psychrobacter cryohalolentis
           K5]
          Length = 632

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/613 (47%), Positives = 388/613 (63%), Gaps = 9/613 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KNYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E    +++V     +    TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 125 ADDILVENGRATAVVTATGIIFNTQTVVLTSGTFLGGVIHIGLESSKGGRAGDQPSIKLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTPAR+D +++ +     Q  D  L   S+M D  +   Q+ C I
Sbjct: 185 DRLRELKLPVGRLKTGTPARIDARSVDFSVMTVQPGDTPLPVMSYMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S ++SG I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 245 THTNARTHDIIRENLDRSPMFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FI ++ GLE  +I RPGYAIEYDY +P+ L PTLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDR 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSA---RKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG N+A    ++N+ D     R ++Y+GV++DDL + G
Sbjct: 365 LYFAGQINGTTGYEEAGVQGLLAGTNAALVTCENNEFDVWTPRRDEAYLGVLVDDLITHG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R + + + ++      + LK
Sbjct: 425 TTEPYRMFTSRAEYRLLLREDNADQRLTETGRKLGLVDDVRWQAYEEKMEAIASETARLK 484

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +  T  N      T  + +   K  TA++ L  P     ++ +I     +  + V E++
Sbjct: 485 DMWATPANALGKKVTEQTGEVLSKEATAFDLLKRPQIHFADIAAIT--DSQVDAQVGEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDYS +  LSNE+ +KL+ ++P  L QA 
Sbjct: 543 EISVKYAGYIDRQQEDIDQMKRLENTALPIDFDYSVVSGLSNEIVQKLAQVRPSTLAQAG 602

Query: 597 KIEGMTPAALNLL 609
           +I G+TPAA+ LL
Sbjct: 603 RISGVTPAAIQLL 615


>gi|33598994|ref|NP_886554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella bronchiseptica RB50]
 gi|81170526|sp|Q7WRF1|MNMG_BORBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33575040|emb|CAE30503.1| glucose inhibited division protein A [Bordetella bronchiseptica
           RB50]
          Length = 639

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/627 (47%), Positives = 402/627 (64%), Gaps = 13/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q
Sbjct: 63  VDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRNAIRARLENQPNLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NS
Sbjct: 123 QAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIE 239
           L     +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ 
Sbjct: 183 LGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEG
Sbjct: 243 CWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK 
Sbjct: 303 LNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKA 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++G
Sbjct: 363 ISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++           LK
Sbjct: 423 VTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK 482

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
           S  +  + L   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 483 STWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|226326137|ref|ZP_03801655.1| hypothetical protein COPCOM_03956 [Coprococcus comes ATCC 27758]
 gi|225205679|gb|EEG88033.1| hypothetical protein COPCOM_03956 [Coprococcus comes ATCC 27758]
          Length = 630

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/614 (43%), Positives = 377/614 (61%), Gaps = 6/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DAL
Sbjct: 15  YDIVVVGAGHAGCEAALACARLGLKTIVFTVSVESIAMMPCNPNIGGTSKGHLVRELDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +QENL++ QGEV 
Sbjct: 75  GGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKNKYSNTMRQTLENQENLEIRQGEVV 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +     ++ RC  VVL TGT+L+     G +    G  G   +N L + 
Sbjct: 135 NILVEDGSVTGVQTYSGAIYRCKAVVLCTGTYLKARCIYGDVSTHTGPNGLQAANYLTDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +      R KTGTPAR+D ++I + K E+QF DER++PFSF TD   +   Q  C +T
Sbjct: 195 LKELGIKMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFTTDPEDVQIEQASCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  S +YSG I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL T+
Sbjct: 255 YTNPTTHEIIRKNLDRSPLYSGMIEGTGPRYCPSIEDKIVKFADKERHQVFIEPEGLETN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  R++PGLE   I++  YAIEYD I+ ++L PTLE K I GL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRSVPGLEHAKIVKNAYAIEYDCIDARQLHPTLEFKSIHGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGL+AGIN+A +    + +   R+ +YIGV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAAAQGLIAGINAALEVLGREQLILDRSQAYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG K+G I + R +      +        L+   +
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTEIGHKIGLISDERYQMLLDKEEIIRKEIHRLEHTNV 494

Query: 484 -TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIERLQIE 539
            TS+ ++   T+          T  E +  P+ + + L  I      +FS  ++E++ I 
Sbjct: 495 GTSQEITDFLTNCDSTPLTSGSTLAELIKRPELNYKLLEPIDHMRTERFSREIMEQIDIN 554

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ+ + ++ K  E R IP D DY ++P+L  E  +KL   +P ++ QAS+I 
Sbjct: 555 IKYEGYIKRQLKQVEQFKKLETRKIPTDIDYDAVPSLRIEAVQKLKQFRPLSIGQASRIS 614

Query: 600 GMTPAALNLLLIYI 613
           G++PA +++LL+Y+
Sbjct: 615 GVSPADISVLLVYL 628


>gi|148653578|ref|YP_001280671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychrobacter sp. PRwf-1]
 gi|205375708|sp|A5WGD0|MNMG_PSYWF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148572662|gb|ABQ94721.1| glucose inhibited division protein A [Psychrobacter sp. PRwf-1]
          Length = 642

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/613 (48%), Positives = 392/613 (63%), Gaps = 9/613 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 16  KAYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 76  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDLFQQG 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E     ++V     + R  TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 136 ADDILVENGKACAVVTATGIIFRTKTVVLTSGTFLGGVIHIGLDNSKGGRAGDQPSIKLA 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTPAR+D +T+ +   + Q  D  L   SFM +  +   Q+ C I
Sbjct: 196 ERLRELKLPVGRLKTGTPARIDARTVDFSVMQTQPGDTPLPVMSFMGNVDMHPEQVNCFI 255

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +++  S ++SG I+  GPRYCPSIEDKI RF ++N HQIF+EPEGL T
Sbjct: 256 THTNEKTHDIIRKHLDRSPLFSGTIEGVGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTT 315

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FIRT+ GLE  +I RPGYAIEYDY NP+ L PTLETK I  
Sbjct: 316 HELYPNGISTSLPFDVQLEFIRTMAGLENAHITRPGYAIEYDYFNPQNLKPTLETKSIDS 375

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNK---LDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AG+N+A  +     +D     R  +Y+GV++DDL + G
Sbjct: 376 LYFAGQINGTTGYEEAGVQGLLAGVNAALSTQDNPVMDSWTPRRDQAYLGVLVDDLITHG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT IG KLG + + R + + + ++      + LK
Sbjct: 436 TKEPYRMFTSRAEYRLLLREDNADQRLTEIGRKLGLVDDTRWQAYQQKMESMATESARLK 495

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L  T  N      T  + +   K  TAY+ L  P+    ++ ++     + ++ V E++
Sbjct: 496 DLWATPHNELGKKFTEQTGEVLSKEATAYDLLKRPNVGFNDIAAVTG--AQVAADVGEQI 553

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDY ++  LSNE+ +KL+ ++P  L QAS
Sbjct: 554 EISVKYAGYIDRQQEDIDQMKRLENTQLPADFDYKAVSGLSNEIVQKLNDIRPATLAQAS 613

Query: 597 KIEGMTPAALNLL 609
           +I G+TPAA+ LL
Sbjct: 614 RISGVTPAAIQLL 626


>gi|319407871|emb|CBI81524.1| glucose inhibited division protein A [Bartonella sp. 1-1C]
          Length = 622

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/621 (55%), Positives = 449/621 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ STIG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGAQTALVTYQISTIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN KKGPAVRGPRTQADR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRKKGPAVRGPRTQADRQLYKNKIQQLLQEQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S +V++    I  + VVLTTGTFLRG++HIG    PAGRMG+  S  L 
Sbjct: 122 VIDIIVKDNRVSGVVLKKQGSIFSNAVVLTTGTFLRGLVHIGNKTWPAGRMGEKSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPARL+ KTI W+K  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYSINLGRLKTGTPARLNKKTIFWNKLSKQQADENPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL  +
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLENN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPEEIQ  F+RTI GLE V I++PGYAIEYD+++P++LF TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEEIQLSFLRTIEGLENVEILQPGYAIEYDFVDPRQLFKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL  +GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLEEIILSRSTAYIGVMVDDLILRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + +     +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQEWGIVSQTRWSCYQQKQHHLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +   +DG  R+AY+ L+YP  ++  L    P      + ++E L+IE+ YA
Sbjct: 482 TPNEAFVHGLQINRDGVRRSAYDLLAYPHMNVARLAHFWPQLHSIDAKIVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQTQDIIALQRDEHLEIPSSLNFQEISGLSNELKTKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L+L YI++   +  ++ 
Sbjct: 602 AALSLILTYIQRQRREKAKLA 622


>gi|56477079|ref|YP_158668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aromatoleum aromaticum EbN1]
 gi|81170514|sp|Q5P4J6|MNMG_AZOSE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56313122|emb|CAI07767.1| glucose inhibited division protein A [Aromatoleum aromaticum EbN1]
          Length = 652

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 387/617 (62%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARIGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++  + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRHRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q         VVLT GTFL G+IH+G     AGR GD P+ SL   
Sbjct: 127 DLTVSGDRVTGVVTQIGLAFEAPAVVLTAGTFLNGLIHVGLDNYSAGRAGDPPAISLGAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP RLD +TI +   ++Q  D+ +  FSF+     + Q + C IT 
Sbjct: 187 LKELALPQGRLKTGTPPRLDARTIDFSVMQEQPGDDPVPVFSFLGRASQHPQQLPCWITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +YSG I+  GPRYCPSIEDKI RF ++  H IFLEPEGL T+ 
Sbjct: 247 TNERTHDIIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKTSHNIFLEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I GLE   I+RPGYAIEYDY +P+ L  +LETK   GLF
Sbjct: 307 IYPNGISTSLPFDVQLAVVRSIRGLENAFILRPGYAIEYDYFDPRNLKSSLETKSFHGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVAGREAWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F +         + L++    
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTEKGRELGLVDDVRWAAFCEKRDAIERETARLRAAWAH 486

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
                 + +  +  K   +    +E L  P+     L S+   P+       VIE+++I 
Sbjct: 487 PARVPAVDAERVVGKALEREYRFFELLRRPNTRYAELMSLPGAPENPATDPQVIEQIEIA 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E  +    E  L+P D DYS +  LS E+++KL++ KP  L QA +I+
Sbjct: 547 AKYQGYIDRQQGEVAKQLQAESTLLPADLDYSRVRGLSKEVQQKLNLHKPGTLGQAGRIQ 606

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAA++LL++++K+ 
Sbjct: 607 GVTPAAISLLMVWLKRR 623


>gi|325129111|gb|EGC51960.1| glucose-inhibited division protein A [Neisseria meningitidis N1568]
          Length = 628

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 390/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYGALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|262281667|ref|ZP_06059436.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus sp. 2_1_36FAA]
 gi|262262121|gb|EEY80818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus sp. 2_1_36FAA]
          Length = 639

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/635 (41%), Positives = 381/635 (60%), Gaps = 13/635 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNPESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-------KNTVKLNEI 623
           S+I G+ PA +++L++Y++       KN  K N +
Sbjct: 605 SRISGVNPADISILMVYLEGKARSISKNKEKQNHV 639


>gi|33591276|ref|NP_878920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella pertussis Tohama I]
 gi|81170529|sp|Q7W0T0|MNMG_BORPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33570918|emb|CAE40381.1| glucose inhibited division protein A [Bordetella pertussis Tohama
           I]
 gi|332380678|gb|AEE65525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bordetella pertussis CS]
          Length = 639

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/627 (47%), Positives = 403/627 (64%), Gaps = 13/627 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             R +DVIV+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++ ++ +Q NL + Q
Sbjct: 63  VDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLYRNAIRAQLENQPNLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + +   V Q     R  TVVLT GTFL G+IH+G      GR GD P+NS
Sbjct: 123 QAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANS 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQIE 239
           L     +     GRLKTGTP R+DG++I +   E+Q  D   +P FSF+    +  RQ+ 
Sbjct: 183 LGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH II   +  S +YSG I+  GPRYCPSIEDKI RF ++  HQ+FLEPEG
Sbjct: 243 CWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT  +YPNG+ST+LP ++Q++ I ++PGLE  +I+RPGYAIEYDY +P+ L  TLETK 
Sbjct: 303 LNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKA 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQGL+AG N+A ++   +     R ++Y+GV++DDL ++G
Sbjct: 363 ISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT IG +LG + + R   F++           LK
Sbjct: 423 VTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLK 482

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------- 528
           S  +  + L   ++ ++  K   +  +  + L  P+ S + L     D  +         
Sbjct: 483 STWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLE 542

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
             ++ E+++ +  YA Y  RQ  E ++    E++ IP D DY ++ +LS E+++KL   +
Sbjct: 543 DQVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHR 602

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  + QA+++ G+TPAA++LLLI++K+
Sbjct: 603 PETIGQAARVSGVTPAAISLLLIHLKR 629


>gi|332970828|gb|EGK09807.1| glucose inhibited division protein A [Psychrobacter sp. 1501(2011)]
          Length = 642

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/613 (48%), Positives = 389/613 (63%), Gaps = 9/613 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDV+VIGGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 16  KSYDVVVIGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 76  ALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKAAIRHTLENQPNLDLFQQG 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E     ++V     + R  TVVLT+GTFL GVIHIG      GR GD PS  L 
Sbjct: 136 ADDILVENGKACAVVTSTGIIFRTKTVVLTSGTFLGGVIHIGLDNSKGGRAGDQPSIKLA 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTPAR+D +T+ +   + Q  D  L   SFM +  +   Q+ C I
Sbjct: 196 ERLSELKLPVGRLKTGTPARIDARTVDFSVMKVQPGDTPLPVMSFMGNVDMHPEQVNCFI 255

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +++  S ++SG+I+  GPRYCPSIEDKI RF +++ HQIF+EPEGL T
Sbjct: 256 THTNEKTHDIIRQHLDRSPLFSGNIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLTT 315

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q +FIRT+ GLE  +I RPGYAIEYDY NP+ L PTLETK I  
Sbjct: 316 HELYPNGISTSLPFDVQLEFIRTMAGLENAHITRPGYAIEYDYFNPQSLKPTLETKSIDS 375

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNK---LDCICFSRTDSYIGVMIDDLTSKG 419
           L+ AGQINGTTGYEEA  QGL+AGIN+A  +     +D     R  +Y+GV++DDL + G
Sbjct: 376 LYFAGQINGTTGYEEAGVQGLLAGINAALSTQDNPVMDSWTPRRDQAYLGVLVDDLITHG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD+RLT IG KLG + + R + +   ++        LK
Sbjct: 436 TKEPYRMFTSRAEYRLLLREDNADHRLTEIGRKLGLVDDTRWEAYQNKMESIGAESGRLK 495

Query: 480 SLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L  T  N      +    +   K  TAY+ L  P+    ++  I       ++ V E++
Sbjct: 496 ELWATPNNELGKKFAERTGESLSKESTAYDLLKRPNVGFDDIAVITG--ADVAADVGEQI 553

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  +  ++K  E   +P DFDYS++  LSNE+ +KL  ++P  L QAS
Sbjct: 554 EISVKYAGYIDRQQEDIDQMKRLENTELPVDFDYSAVSGLSNEIVQKLQDIRPATLAQAS 613

Query: 597 KIEGMTPAALNLL 609
           +I G+TPAA+ LL
Sbjct: 614 RISGVTPAAIQLL 626


>gi|255505831|ref|ZP_05348360.3| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bryantella formatexigens DSM 14469]
 gi|255265688|gb|EET58893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bryantella formatexigens DSM 14469]
          Length = 627

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 377/621 (60%), Gaps = 9/621 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL 
Sbjct: 9   DIVVVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVREIDALG 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + + E+L + Q EV  
Sbjct: 69  GEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKKDYSYQMRKTLENTEHLTIKQAEVTE 128

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   +  +     ++  C   +L TGT+LR     G +    G  G   +N L +S 
Sbjct: 129 IIVQDGTLKGVKTFSGAVYYCRACILCTGTYLRARCIYGDVSNYTGPNGLQAANHLTDSL 188

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGITR 244
            +      R KTGTPAR+DG+TI + K E+Q+ DER++PFSF TD   +   Q+ C +T 
Sbjct: 189 KEHGIAMYRFKTGTPARIDGRTIDYSKMEEQYGDERVVPFSFSTDPEEVQIDQVSCWLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II EN+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG  T+ 
Sbjct: 249 TNEKTHEIIRENLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPEGRYTNE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q    R++PGLEK  I+R  YAIEYD I+ ++L+PTLE KKISGLF
Sbjct: 309 MYVGGMSSSLPEDVQVAMYRSVPGLEKAEIVRNAYAIEYDCIDSRQLYPTLEFKKISGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQ NG++GYEEAAAQGL AGIN+A K+   + + F R++SYIGV+IDDL +K   EPY
Sbjct: 369 SGGQFNGSSGYEEAAAQGLAAGINAAMKTLGREQVIFDRSESYIGVLIDDLVTKENREPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL- 483
           RM TSR+EYR+ LR DNAD RLTP+G + G I +          ++       ++ L + 
Sbjct: 429 RMMTSRSEYRLLLRQDNADLRLTPLGHEFGLIPDTVYNILLDKKKQIEEETDRVEKLKIG 488

Query: 484 ----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                 + L     +  + G   T  E +  P+     L ++ PD  +    V E++ I 
Sbjct: 489 AVDNVQEFLQQHGSTPLKTGT--TLGELIRRPELDYDMLAALDPDRPQLLRGVAEQVNIN 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + +  K  E R IP+D +Y  +  L  E ++KL + +P +L QAS+I 
Sbjct: 547 IKYDGYITRQMKQVEHFKKLENRKIPEDINYRDIHGLCIEAQQKLEMYRPVSLGQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G++PA +++LL+Y+K    KL
Sbjct: 607 GVSPADISVLLVYLKSGYAKL 627


>gi|325698057|gb|EGD39938.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK160]
 gi|327463810|gb|EGF10126.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1057]
 gi|332359521|gb|EGJ37340.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1056]
          Length = 659

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|145301183|ref|YP_001144024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166222904|sp|A4STQ4|MNMG_AERS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|142853955|gb|ABO92276.1| glucose inhibited division protein A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 629

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/622 (45%), Positives = 392/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YHEQFDVIVVGGGHAGTEAATAAARMGLNTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M R  D AGIQFR LN  KGPAVR  R QADR LY+  +++ + +  NL + Q
Sbjct: 63  VDALGGIMARATDLAGIQFRTLNSSKGPAVRATRAQADRLLYKAVVRQMLENYPNLKIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + ++ +V Q    I   TVVLT GTFL G+IHIG      GR GD PS +
Sbjct: 123 QACDDLIMDGDRVAGVVTQSGIRISGKTVVLTVGTFLNGLIHIGMENYKGGRAGDPPSIA 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +      RLKTGTP R+D +++     + Q+ D+    FSF+ D   + RQ+ C
Sbjct: 183 LAQRLREMPLRIDRLKTGTPPRIDARSVDLSVMQAQYGDDPRPVFSFIGDASQHPRQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL
Sbjct: 243 YVTHTNERTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKITRFADKTAHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R+I G E  +I RPGYAIEYD+ +P++L   +E+K I
Sbjct: 303 TTHELYPNGISTSLPFDVQVQIVRSIRGFENAHITRPGYAIEYDFFDPRDLKANMESKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AG+N+  ++   D     R  +Y+GVMIDDL++ G 
Sbjct: 363 GNLFFAGQINGTTGYEEAAAQGLMAGLNAGLRAQDKDPWHPRRDQAYMGVMIDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  +F   +++    R  ++S
Sbjct: 423 REPYRMFTSRAEYRLLLREDNADLRLTAIGRELGLVDDERWGKFNIKMEQVELERQRMRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERL 536
             +  ++ S  +++        + +   E L  P+ +   L +I       S     +++
Sbjct: 483 TWIHPQHPSLEAVNALVNTPLTREQNLEELLRRPEVTYDALMAIEGVGPALSDHAAADQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E ++    E  L+P D +Y  +  LSNE+  KL+  KP  + QAS
Sbjct: 543 EIQIKYAGYIERQYDEVEKQLRNENTLLPLDMNYRDVNGLSNEVIAKLNDAKPETIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK+ +
Sbjct: 603 RISGITPAAISILLVHLKKHGL 624


>gi|205831579|sp|A1WGT2|MNMG_VEREI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 658

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/646 (44%), Positives = 386/646 (59%), Gaps = 27/646 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+G GHAG EAA  AA+LG  T L+T    T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGAGHAGTEAALAAARLGQRTLLLTQSLETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + 
Sbjct: 62  EVDALGGAMALATDESGIQFRILNRSKGPAVRATRAQADRLLYKAAIRRRLENQPGLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q   +     VVLT GTFL G IH+G     AGR G+  + 
Sbjct: 122 QQAVDDLMLEGDRVVGAVTQVGVVFCARAVVLTAGTFLDGKIHVGLSHYAAGRAGEPSAI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL--------IPFSFM--- 229
            L     +     GRLKTGTP R+DG++I W + E+Q  D             FSFM   
Sbjct: 182 GLSARLKELKLPQGRLKTGTPPRIDGRSIDWSQCEEQPGDGMPGGVNAGQVPVFSFMAHA 241

Query: 230 --TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
               ++  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF +
Sbjct: 242 YGGARMHPQQLPCWITHTNQRTHAIIRSGFDRSPMFTGSIEGVGPRYCPSVEDKINRFAD 301

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           ++ HQ+FLEPEGL T  VYPNGIST+LP +IQ+Q +R++ GLE  +I+RPGYAIEYDY +
Sbjct: 302 KDSHQVFLEPEGLGTHEVYPNGISTSLPFDIQYQLVRSMAGLENAHILRPGYAIEYDYFD 361

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L    ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +          R  +Y
Sbjct: 362 PRALKSNFETRQIRGLFFAGQINGTTGYEEAAAQGLFAGVNAALQCRGDAPWLPGRDQAY 421

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R + F++ 
Sbjct: 422 LGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEVGRRMGLVDDARWEVFSRK 481

Query: 468 IQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
                     LK+  +  +NL    S  +  K      + +E L  PD     L S+   
Sbjct: 482 RDAVLRETERLKATWVNPRNLPDIESGRVLGKPMAHEYSLFELLRRPDVDYAGLMSLDGG 541

Query: 525 -----------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                          S  V+E+++I + YA Y  RQ  E +     E   +P   DY+ +
Sbjct: 542 KYAAADVSRETLGMLSESVVEQVEIAAKYAGYIERQKGEVERAAHFETLRLPAGLDYAQV 601

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ALS E ++ LS  +P  L QAS+I G+TPAA++LLL+++KK   K
Sbjct: 602 TALSIEARQVLSRHRPETLGQASRITGITPAAISLLLVHLKKGGFK 647


>gi|78224742|ref|YP_386489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter metallireducens GS-15]
 gi|123570637|sp|Q39PR0|MNMG_GEOMG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78195997|gb|ABB33764.1| Glucose-inhibited division protein A subfamily [Geobacter
           metallireducens GS-15]
          Length = 624

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/616 (47%), Positives = 392/616 (63%), Gaps = 3/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ YDVIV+G GHAGCEAA  AA++G  T L+T     I  MSCNPAIGG  KGHLV+E
Sbjct: 6   YDKQYDVIVVGAGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGSAKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  DA GIQFR+LN +KGPAVR  R QAD++LYRL M+  +  QE L + Q
Sbjct: 66  IDALGGEMGKNIDATGIQFRILNTRKGPAVRASRAQADKQLYRLRMKHVMEQQERLSLKQ 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV G   E   +  +  +       +TV+LTTGTF+RG+IH+G    P GR GD PS  
Sbjct: 126 AEVTGIVVEDGEVRGVDTKVGVRYLGATVILTTGTFMRGLIHVGLTNYPGGRAGDLPSVG 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +  F  GRLKTGTPARLDG+TI + + E Q  D+  +PFSF T++I   Q+ C 
Sbjct: 186 LSDQLRELGFAVGRLKTGTPARLDGRTIDFTRLEPQHGDDPPVPFSFSTERIDQPQVPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ FLEPEG +
Sbjct: 246 IAYTNPRSHEIIRSGLDRSPLYAGVIEGIGPRYCPSIEDKVVRFPEKDRHQTFLEPEGRD 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY++P +L  +LETK + 
Sbjct: 306 TVEYYPSGLSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVDPIQLHASLETKLVR 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QGL+AGIN+A +    + +   R+++YIGVMIDDL + G  
Sbjct: 366 NLYHAGQINGTSGYEEAAGQGLMAGINAALRVRDKEPLILGRSEAYIGVMIDDLVTLGTR 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL   G  +G + E   +RF +  +      + LK  
Sbjct: 426 EPYRMFTSRAEYRLLLREDNADLRLRERGHAVGLVPEGAYQRFLEKRERIGAELARLKGT 485

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L           + S        T  + L  PD + + L  I P A +   +V E+++I
Sbjct: 486 KLLPSEADPDFLAAFSLTALQNALTYEQLLRRPDITYEELCRIDPRAAEVPPVVREQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ + +  +  E   +P  FDY +LP LS E++EKL+  +P  L QAS+I
Sbjct: 546 QIKYQGYIERQLDQVERARKLEGTRVPAGFDYGALPGLSAEVREKLAKFRPDTLGQASRI 605

Query: 599 EGMTPAALNLLLIYIK 614
           +G+TPAA+ +L + +K
Sbjct: 606 QGVTPAAVGILSLALK 621


>gi|327471583|gb|EGF17026.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK408]
          Length = 659

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|308388412|gb|ADO30732.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha710]
          Length = 642

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|254520703|ref|ZP_05132759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. 7_2_43FAA]
 gi|226914452|gb|EEH99653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. 7_2_43FAA]
          Length = 632

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/618 (44%), Positives = 394/618 (63%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA  AA++G  T + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 15  EYDVVVVGAGHAGCEAALAAARMGLKTLICTTNLDSVAMMPCNPNIGGTAKGHLVREIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y+  M+  + +QENL + Q EV
Sbjct: 75  LGGEMGVNIDNTFIQSRMLNTSKGPAVHSLRAQADKKKYQNRMKNVLENQENLSLRQLEV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E   +  ++ ++     C  ++LTTGT+LR  I IG +   +G  G + +N L  
Sbjct: 135 IEVDVEDGKVKGVLTKNGGYFSCKAIILTTGTYLRARIIIGDVTYNSGPNGLAAANELSQ 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ +++ + K  +Q  DE+++PFSFM+D I+  Q+ C +T 
Sbjct: 195 SLIDLGISLRRFKTGTPARINKRSVDFSKMVEQPGDEKIVPFSFMSDDISREQVSCWLTY 254

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI+ S +Y+G I+  GPRYCPSIEDK++RF +R  HQ+F+EPEG +T  
Sbjct: 255 TSGETHKIIQENIERSPMYNGLIEGVGPRYCPSIEDKVMRFPDRERHQLFIEPEGEDTQE 314

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q Q +RT+PGLE V I+R  YAIEYD I+P +L PTLE K   GL+
Sbjct: 315 MYIGGMSSSLPEDVQLQMLRTVPGLENVEIMRTAYAIEYDSIDPTQLKPTLEFKNFDGLY 374

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAAAQG+VAGIN++ K    + +  +R+D Y+GV+IDDL +KG  EPY
Sbjct: 375 GAGQLNGSSGYEEAAAQGIVAGINASLKIKDKEPMILTRSDGYMGVLIDDLVTKGTNEPY 434

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT IG K+G   E R +RF             LK L +T
Sbjct: 435 RMMTSRAEYRLLLRQDNADFRLTEIGYKVGLATEERYQRFLTRKNNIENEAKRLKELQIT 494

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K  ++    S+   +  K  + YE +  P+    +L S+  D   +   + E++   + 
Sbjct: 495 NKKETNEFLVSMGSTELKKPISFYELIKRPELDYFSLESLDIDRPDYEDDIGEQINTIAK 554

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q+ + ++ K  EK+LIP+D +Y+ +  L  E  +KLS ++P ++ QAS+I G+
Sbjct: 555 YEGYIDSQLDQVRQFKKFEKKLIPEDLEYADVKGLRTEAIQKLSNIRPVSIGQASRISGV 614

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY++    K
Sbjct: 615 SPADISVLLIYLEHQYKK 632


>gi|322386458|ref|ZP_08060087.1| glucose inhibited division protein A [Streptococcus cristatus ATCC
           51100]
 gi|321269544|gb|EFX52475.1| glucose inhibited division protein A [Streptococcus cristatus ATCC
           51100]
          Length = 660

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/627 (41%), Positives = 379/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDVIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +            V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKIEALGFKALTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|256851669|ref|ZP_05557057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661614|ref|ZP_05862526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934248|ref|ZP_06339525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|297205278|ref|ZP_06922674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii JV-V16]
 gi|256615627|gb|EEU20816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547671|gb|EEX23649.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301722|gb|EFA93989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|297149856|gb|EFH30153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii JV-V16]
          Length = 634

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/625 (41%), Positives = 360/625 (57%), Gaps = 5/625 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +AK+G  T LIT     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAKMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   +V    +     +VVLTTGT  RG I IG+L   +G      +  L
Sbjct: 127 TVDELIVEDGVCHGVVTNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDSEPRHFSFETKDEDYLKDQLSC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG 
Sbjct: 247 WMTYTNETTHKIIRDNLDRAPMYTGVIEGIGPRYCPSIETKIVRFADKPRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I
Sbjct: 307 HTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG 
Sbjct: 367 KNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKPGFTLGRDEAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G KLG I + R ++F +         + L  
Sbjct: 427 NEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQKFEEKKAAIKQTLAELYD 486

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI          A  FL  P  +I  +  +          V E+++
Sbjct: 487 ITIHPNDEVQEYLESIGQSPLNAGLKASAFLRRPGVTIAAIEKLSGTKLNSDRYVREQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +
Sbjct: 547 IDVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G+ PA + +L +YI++      E
Sbjct: 607 ISGVNPADIAILTVYIQQGKYSKVE 631


>gi|319404911|emb|CBI78512.1| glucose inhibited division protein A [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 622

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/621 (55%), Positives = 449/621 (72%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TALIT++ STIG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGAQTALITYQISTIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN KKGPAVRGPRTQADR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRKKGPAVRGPRTQADRQLYKNKIQQLLQEQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S +V++    I  + VVLTTGTFLRG++HIG    PAGRMG+  S  L 
Sbjct: 122 VIDLIVKDNRVSGVVLKKQGSIFSNAVVLTTGTFLRGLVHIGNKTWPAGRMGEKSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPARL+ KTI W+K  KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYSINLGRLKTGTPARLNKKTIFWNKLSKQQADEDPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL  +
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLENN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPEEIQ  F+RTI GLE + I++PGYAIEYD+++P++LF TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEEIQLSFLRTIEGLENIEILQPGYAIEYDFVDPRQLFKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL  +GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLEEIILSRSTAYIGVMVDDLILRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + + R   + +     +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQEWGIVSQTRWSCYQQKQHHLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +   +DG  R+AY+ L+YP  ++  L    P      + ++E L+IE+ YA
Sbjct: 482 TPNEAFVHGLQINRDGVRRSAYDLLAYPHMNVARLAYFWPQLHSIDAKIVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLKRQTQDIIALQRDEHLEIPSSLNFQEISGLSNELKTKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L+L YI++   +  ++ 
Sbjct: 602 AALSLILTYIQRQRREKAKLA 622


>gi|254447507|ref|ZP_05060973.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium HTCC5015]
 gi|198262850|gb|EDY87129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium HTCC5015]
          Length = 628

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/622 (45%), Positives = 396/622 (63%), Gaps = 5/622 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVIGGGHAGTEAALAAARSGARTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ AD  GIQFR LN +KGPAVR  R QADR LY+ A+++ + +QENL + Q    
Sbjct: 67  GGAMGKAADLGGIQFRTLNSRKGPAVRATRAQADRVLYKAAIRQILENQENLSIFQQAAD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + ++ +V Q   +    TVVLT GTFL G IHIG  +   GR GD PSN+L   
Sbjct: 127 DLCVEGDRVTGVVTQSGIVFSAKTVVLTVGTFLGGQIHIGLKQSAGGRAGDPPSNALAER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
                F  GRLKTGTP R+D +++ + + E Q  D+ +  FSFM     +  Q+ C IT 
Sbjct: 187 LRALPFRVGRLKTGTPPRIDARSVDFSQLETQPGDDPVPVFSFMGSAQDHPEQVPCHITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II + +  S +YSG I+  GPRYCPSIEDKI+RF +++ HQIF+EPEGLNT  
Sbjct: 247 TNETTHDIIRQGLDESPMYSGVIEGVGPRYCPSIEDKIMRFADKDRHQIFIEPEGLNTHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+L  E Q   +R+I G E  +I RPGYAIEYDY +P++L  TLET+ +  L+
Sbjct: 307 LYPNGISTSLSFETQMALVRSIKGFENAHITRPGYAIEYDYFDPRDLRNTLETQFVDNLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AGIN++ ++ ++  +   R  +YIGV++DDL ++G  EPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLLAGINASMRAREVGELTLGRDQAYIGVLVDDLITRGTKEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLT +G  +G + + R   F    +     +  L+SL + 
Sbjct: 427 RMFTSRAEHRLLLREDNADLRLTELGRDVGLVDDARWTAFNDKREAVACEKQRLQSLWVQ 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
             + +  S   ++ K   K  TA + L  P+ +   L S+    +   +  V ++++ + 
Sbjct: 487 PHSPAGKSFAKVTGKALSKEATAADLLKRPEMNYSQLMSLDGIGSGTETPSVADQVETQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  R   + +  + +E   +P D DY S+  LS E+  KL+  +P  L QA +I G
Sbjct: 547 KYAGYLARAEADIERNRAQENTALPDDIDYPSIRGLSKEVAHKLAEHRPNTLGQAGRIPG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           +TPAA++LL +++K+ ++  + 
Sbjct: 607 VTPAAISLLRVHLKRRSLPRSA 628


>gi|194291177|ref|YP_002007084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225012|emb|CAQ71023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 652

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/633 (45%), Positives = 387/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPKEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   + Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAMTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL           GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + Q +
Sbjct: 182 SLSARLKDLKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRGLKASLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++
Sbjct: 362 AIRGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDPWTPRRDQAYLGVLVDDLITR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     L
Sbjct: 422 GVTEPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDARWDAFNRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDA----- 525
           KS  +    L    +  +  K   +  +  + L  P+ S + L ++      P+A     
Sbjct: 482 KSTWVNPSMLPAEEAVPLLGKPIEREYSLADLLRRPEVSYEALMALQGGRHAPEAPLDAE 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              +  + E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+
Sbjct: 542 PMLAEQIREQIEIGIKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  L QAS+I G+TPAA++LLL+++KK  +
Sbjct: 602 QHRPETLGQASRISGVTPAAVSLLLVHLKKKGL 634


>gi|225076367|ref|ZP_03719566.1| hypothetical protein NEIFLAOT_01411 [Neisseria flavescens
           NRL30031/H210]
 gi|224952310|gb|EEG33519.1| hypothetical protein NEIFLAOT_01411 [Neisseria flavescens
           NRL30031/H210]
          Length = 631

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S     ++  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 NEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YTPQKLAEEEQLRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|325137026|gb|EGC59622.1| glucose-inhibited division protein A [Neisseria meningitidis M0579]
 gi|325202972|gb|ADY98426.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240149]
 gi|325203314|gb|ADY98767.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240355]
 gi|325205285|gb|ADZ00738.1| glucose-inhibited division protein A [Neisseria meningitidis
           M04-240196]
 gi|325207230|gb|ADZ02682.1| glucose-inhibited division protein A [Neisseria meningitidis
           NZ-05/33]
          Length = 628

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|94312437|ref|YP_585647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cupriavidus metallidurans CH34]
 gi|166222725|sp|Q1LHJ8|MNMG_RALME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|93356289|gb|ABF10378.1| glucose-inhibited cell-division protein [Cupriavidus metallidurans
           CH34]
          Length = 654

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 385/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPKEFDVIVVGGGHAGTEAALAAARMGCQTLLLSHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +     Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGARTQVGIDFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH +I   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWITHTNSRTHDVIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRGLKSSLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++
Sbjct: 362 AIEGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+SLR DNAD RLT IG +LG + + R   F +     +     L
Sbjct: 422 GVTEPYRMFTSRAEFRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETERL 481

Query: 479 KSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDAR---- 526
           KS  +         +  +  K   +  +  + L  P+   + L ++      P+      
Sbjct: 482 KSTWVNPTLLPEADAVPLLGKGIEREYSLADLLRRPEVRYEALVALQDGRFAPETPLADD 541

Query: 527 -KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              +  + E+++I   Y  Y  RQ  E  +++  E   +P +FDY+ +  L  E+ +KL+
Sbjct: 542 TMLAEQIREQIEIGIKYHGYIARQAAEVDKLEANESTKLPPNFDYTEVRGLGFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  L QAS+I G+TPAA++LLL+++KK  +
Sbjct: 602 QHRPETLGQASRISGVTPAAISLLLVHLKKKGM 634


>gi|294667216|ref|ZP_06732437.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602997|gb|EFF46427.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 634

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/623 (46%), Positives = 387/623 (62%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGREMGLVDDARWARFAAKQEAVQRETARLA 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N       ++      +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVANVLGVTVSRETNVLDLIKRPELNYATLMRVPALGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|325689330|gb|EGD31336.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK115]
          Length = 659

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 379/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEELGFKSLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|294627584|ref|ZP_06706167.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598215|gb|EFF42369.1| glucose-inhibited division protein A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 634

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/623 (46%), Positives = 387/623 (62%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGREMGLVDDARWARFAAKQEAVQRETARLA 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N       ++      +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVANVLGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P ++ QA
Sbjct: 548 VEIRVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|73543039|ref|YP_297559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia eutropha JMP134]
 gi|123623784|sp|Q46VW9|MNMG_RALEJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72120452|gb|AAZ62715.1| Glucose-inhibited division protein A subfamily [Ralstonia eutropha
           JMP134]
          Length = 646

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/633 (45%), Positives = 387/633 (61%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPKEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G      GR GD  S 
Sbjct: 122 QQAVDDLLVEGDRVVGAVTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPASV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL     +     GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + Q +
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I+ TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  ++ HQIFLEPE
Sbjct: 242 PCWISHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAIEYDY +P+ L  +LE+K
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAIEYDYFDPRALKASLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++
Sbjct: 362 AISGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     L
Sbjct: 422 GVTEPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDVRWDAFNRKRDAVSRETERL 481

Query: 479 KSLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPD-----A 525
           KS  +    L +     +  K   +  +  + L  P+    +L ++      P+      
Sbjct: 482 KSTWVNPTILPAEDAVPLLGKPIEREYSLADLLRRPEVVYNDLMALQGGRHAPEVPLDGD 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 + E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+
Sbjct: 542 PLLMDQIREQIEIGVKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  L QAS+I G+TPAA++LLL+++KK  +
Sbjct: 602 QHRPETLGQASRISGVTPAAISLLLVHLKKKGL 634


>gi|315640366|ref|ZP_07895481.1| glucose inhibited division protein A [Enterococcus italicus DSM
           15952]
 gi|315483871|gb|EFU74352.1| glucose inhibited division protein A [Enterococcus italicus DSM
           15952]
          Length = 634

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/622 (42%), Positives = 373/622 (59%), Gaps = 9/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            S+DVIV+G GHAG EAA  A+++G  T L+T     +G M CNP++GG  KG +VREID
Sbjct: 7   ESFDVIVVGAGHAGSEAALAASRMGNKTLLLTINLDMVGFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 67  ALGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSAEMKHTIEQEPNLTLRQGL 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E ++   ++    +      VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VERLIVEDHVCKGVITATGARYAAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           +   +   +  R KTGTP R+ G TI +  TE Q  D+    FSF T        Q  C 
Sbjct: 187 DHLKELGLEIARFKTGTPPRVKGSTIDYSVTEIQPGDDEPNHFSFGTPDSAYKLEQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGL+
Sbjct: 247 LTYTNEKTHEIIHKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQLFLEPEGLH 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   +R+I GLE+V ++R GYAIEYD + P +L PTLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVAMLRSIAGLEEVEMMRTGYAIEYDVVVPHQLRPTLETKPIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ NGT+GYEEAA QG++AGIN+  K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLFTAGQTNGTSGYEEAAGQGIIAGINAGLKVQGKEPLIVKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + F    +        L++ 
Sbjct: 427 EPYRLLTSRAEYRLLLRHDNADLRLTEMGHQIGLVKEEQYQAFLDKKKHVEAELKRLRNE 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L         L     +  +DG    A + L  P+   Q++    PD    +   IE++
Sbjct: 487 RLKPTQEVQAMLIQRGSAELKDGI--LAADLLKRPELMYQDIVQFLPDTPSLTKKEIEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++K  E + IP+  DYS++  L+ E K+KL  ++P  L QAS
Sbjct: 545 EIQLKYEGYINKALEKVEKLKRMEAKRIPEKIDYSAINGLATEAKQKLQKIQPETLAQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++L++YI++  +
Sbjct: 605 RISGVNPADMSILMVYIEQGKI 626


>gi|171060863|ref|YP_001793212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptothrix cholodnii SP-6]
 gi|205831529|sp|B1XYL1|MNMG_LEPCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170778308|gb|ACB36447.1| glucose inhibited division protein A [Leptothrix cholodnii SP-6]
          Length = 685

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/650 (44%), Positives = 389/650 (59%), Gaps = 31/650 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGCDTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A+++ + +Q +L + 
Sbjct: 62  EVDALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRQRLENQPHLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R  TVVLT GTFL G IH+G    PAGR GD P+ 
Sbjct: 122 QQAVDDLMVEGDRVVGAVTQVGIRFRARTVVLTAGTFLDGKIHVGLNNYPAGRAGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-----------ERLIPFSFM 229
           SL     +     GRLKTGTP R+DG++I + K  +Q  D             +  FSF+
Sbjct: 182 SLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLIEQPGDGVAAADGTPASSPMPVFSFL 241

Query: 230 TDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                + RQ+ C IT TN  TH I+      S +++G I+  GPRYCPSIEDKI RF ++
Sbjct: 242 GSAAQHPRQMPCWITNTNQRTHDILRTGFDRSPMFTGVIEGVGPRYCPSIEDKINRFADK 301

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           N HQIFLEPEGL T+  YPNGIST+LP +IQ   +RT+ G+E   I+RPGYAIEYDY +P
Sbjct: 302 NSHQIFLEPEGLTTNEYYPNGISTSLPFDIQLAAVRTMLGMENAYILRPGYAIEYDYFDP 361

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           +EL  + E+K I GLF AGQINGTTGYEEAAAQGL AG N+A ++     + F R  +Y+
Sbjct: 362 RELKTSFESKAIGGLFFAGQINGTTGYEEAAAQGLYAGANAALQAQGNPPLSFGRDQAYL 421

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT IG  +G + + R   F +  
Sbjct: 422 GVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEIGRSVGLVDDVRWDAFNRKR 481

Query: 469 QEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
              +     LKS  +    L    S  +  K         + +  P  S   +      A
Sbjct: 482 DAVSRETERLKSTWVHPAILPAADSERLFGKALEHEYNLADLMRRPGISYDTVAEALTIA 541

Query: 526 R----------------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           R                  ++ VIE+L+I   YA Y  +Q  + +     E   +P + D
Sbjct: 542 RPGNYVSRETLNSQLGADLAAAVIEQLEIAIKYAGYIDKQNEDVQRAAHYEHLRLPDELD 601

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           Y+ + ALS E+++KL+  +P  L QAS+I G+TPAAL+LLLI++K+   K
Sbjct: 602 YAQVTALSFEVRQKLTKHRPETLGQASRISGVTPAALSLLLIHLKRGRFK 651


>gi|260665205|ref|ZP_05866054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii SJ-7A-US]
 gi|260560942|gb|EEX26917.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii SJ-7A-US]
          Length = 634

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/620 (41%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASARMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRILNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G      +  L
Sbjct: 127 TVDELIVEDGVCHGVITNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDTEPRHFSFETKDEDYLKDQLSC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG 
Sbjct: 247 WMTYTNETTHKIIRDNLDRAPMYTGVIEGVGPRYCPSIETKIVRFADKPRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTD  Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I
Sbjct: 307 NTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG 
Sbjct: 367 KNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKSGFTLGRDEAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F           + L  
Sbjct: 427 NEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQEFEDKKATIKQTLAELYD 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI          A  FL  P  +I  +  +  +       V E+++
Sbjct: 487 ITIHPNDEVQAYLKSIGQSPLNAGLKASAFLRRPGVTIAAIEKLSGEKLNSDRYVREQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +
Sbjct: 547 IDVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA + +L +YI++  
Sbjct: 607 ISGVNPADIAILTVYIQQGK 626


>gi|332363580|gb|EGJ41361.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1059]
          Length = 659

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +            V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPIKETNAKVEELGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|332365069|gb|EGJ42834.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK355]
          Length = 635

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTELGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFIRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|160893419|ref|ZP_02074204.1| hypothetical protein CLOL250_00968 [Clostridium sp. L2-50]
 gi|156864814|gb|EDO58245.1| hypothetical protein CLOL250_00968 [Clostridium sp. L2-50]
          Length = 632

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/619 (41%), Positives = 372/619 (60%), Gaps = 5/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV+V+G GHAGCEAA  +A+LG  T L T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VVEENYDVVVVGAGHAGCEAALASARLGLETILFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + ++L + 
Sbjct: 63  ELDALGGEMGKNIDKTYIQSKMLNASKGPAVHSLRAQADKSNYSRTMKHTLENTDHLVLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+       ++  +     +      VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSELMVIDGVVKGVKTFSGATYYAKAVVLCTGTYLKARCIYGDVVNHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L +S  +      R KTGTPARLD +TI + + E+Q  DE ++PFSF    + I   Q+
Sbjct: 183 HLSDSMKEAGIGIRRFKTGTPARLDKRTIDFSQMEEQKGDEHIVPFSFTNTEEDIKRDQV 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN ETH II ENI  S ++SG I+  GPRYCPSIEDK+++F ++  HQIF+EPE
Sbjct: 243 SCWLCYTNEETHEIIRENINRSPLFSGVIEGTGPRYCPSIEDKVMKFPDKTRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q++ IR++ GLE V I+R  YAIEYD I+   L  +LE K
Sbjct: 303 GEFTNEMYMGGMSSSLPEDVQYKMIRSMKGLENVRIVRNAYAIEYDCISAINLKHSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQ+NG++GYEEAAAQGL+AGIN+ARK    + +   R+ +YIGV+IDDL +K
Sbjct: 363 DVEGLFGAGQLNGSSGYEEAAAQGLMAGINAARKVLGKEPVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I + R ++F +           L
Sbjct: 423 ETKEPYRMMTSRAEYRLLLRQDNADLRLTDIGHEIGLIDDERYEKFCQKRTMIEEETKRL 482

Query: 479 KSLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
              ++   +       S+   +     +  E    P+ S + +  I P+ +   + VIE+
Sbjct: 483 TETMVGGNSKIQEFLRSMETTELKTAVSLAELTRRPELSYEKIAPIDPERQPLPADVIEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ  +  + K  EKR+IP D +Y  +  L  E ++KL  +KP N+ QA
Sbjct: 543 IDISIKYEGYIKRQTEQVHQFKKLEKRMIPADLNYDDVSNLRKEARQKLKDIKPENIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +++LL+Y+K
Sbjct: 603 SRISGVSPADISVLLVYLK 621


>gi|325929407|ref|ZP_08190535.1| glucose-inhibited division protein A [Xanthomonas perforans 91-118]
 gi|325540182|gb|EGD11796.1| glucose-inhibited division protein A [Xanthomonas perforans 91-118]
          Length = 634

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 384/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKT 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETTRLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|125719133|ref|YP_001036266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sanguinis SK36]
 gi|166200625|sp|A3CRB1|MNMG_STRSV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|125499050|gb|ABN45716.1| Glucose inhibited division protein A, putative [Streptococcus
           sanguinis SK36]
          Length = 635

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKQELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|332364139|gb|EGJ41916.1| glucose inhibited division protein A [Streptococcus sanguinis SK49]
          Length = 659

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 379/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +            V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|324989554|gb|EGC21500.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK353]
          Length = 659

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +            V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATQQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT  G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTETGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|325686452|gb|EGD28481.1| glucose inhibited division protein A [Streptococcus sanguinis SK72]
          Length = 635

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIVVIGAGHAGVEASLAASRMGCKVLLATLNIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|322513172|ref|ZP_08066303.1| glucose inhibited division protein A [Actinobacillus ureae ATCC
           25976]
 gi|322121068|gb|EFX92892.1| glucose inhibited division protein A [Actinobacillus ureae ATCC
           25976]
          Length = 630

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/606 (46%), Positives = 375/606 (61%), Gaps = 5/606 (0%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
            EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+ GLM    D AG
Sbjct: 19  TEAALAPARMGLKTLLLTHNLDTLGQMSCNPAIGGIGKGHLVKEIDAMGGLMAIATDQAG 78

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           IQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV     E N     
Sbjct: 79  IQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVVDILVENNRAVGA 138

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V +     +  +VVLT GTFL G IHIG      GR GD  +  L +     +    RLK
Sbjct: 139 VTKMGLTFKARSVVLTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLK 198

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMEN 256
           TGTP RLD +TI +D   KQ  D  L   SFM    +  RQI C IT TN +TH +I  +
Sbjct: 199 TGTPPRLDARTINFDVLAKQHGDAELPVMSFMGSVDLHPRQIPCYITHTNEQTHDLIRNS 258

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL+T  VYPNGIST+LP 
Sbjct: 259 LDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLSTIEVYPNGISTSLPF 318

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           ++Q   + ++ GLE   II+PGYAIEYDY +P++L PTLETK I GLF AGQINGTTGYE
Sbjct: 319 DVQMGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAIEGLFFAGQINGTTGYE 378

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EAAAQGL+AGIN+A +    +    +R  +Y GV++DDL + G  EPYR+FTSRAEYR+ 
Sbjct: 379 EAAAQGLLAGINAALQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLL 438

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN---LSSTSI 493
           LR DNAD RLTPI  +LG I + R  RF + ++     R  LK + +  ++    +   +
Sbjct: 439 LREDNADIRLTPIAHQLGLIDDARWARFNQKMENIERERERLKQIWIHPQSEHLAAVNEL 498

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESSYAAYTGRQMIE 552
                 +  +  + L  P+ + + L  +   A         E+++I   Y  Y   Q  E
Sbjct: 499 VSSPLTREASGEDLLRRPEVTYEKLVQVAAFAPALDDKQAAEQVEISIKYQGYIEHQQNE 558

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            +  K  E  LIP +F+Y  + +LSNE++ KL   +P ++ QAS+I G+TPAA+++LL+ 
Sbjct: 559 IERHKRHENTLIPAEFNYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVN 618

Query: 613 IKKNTV 618
           +KK  +
Sbjct: 619 LKKQGM 624


>gi|238855501|ref|ZP_04645806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 269-3]
 gi|282931527|ref|ZP_06337026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
 gi|238831867|gb|EEQ24199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 269-3]
 gi|281304334|gb|EFA96437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus jensenii 208-1]
          Length = 634

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/620 (41%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A++G  T LIT     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASARMGQKTLLITISLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+R I    NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRILNTGKGPAVRALRAQADKVQYHETMKRTIEDTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G      +  L
Sbjct: 127 TVDELIVEDGVCHGVITNTGAKYLAKSVVLTTGTSARGRIIIGELTYSSGPNNTIAAIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D     FSF T  +     Q+ C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDFSKTEEEPGDTEPRHFSFETKDEDYLKDQLSC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH+II +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQIFLEPEG 
Sbjct: 247 WMTYTNETTHKIIRDNLDRAPMYTGVIEGVGPRYCPSIETKIVRFADKPRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTD  Y    ST++PEE+Q   + +I GLE   ++RPGYAIEYD I P +L  TLETK I
Sbjct: 307 NTDEYYVGDFSTSMPEEVQQDMVHSIAGLENAEMMRPGYAIEYDVIEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEA  QG+VAGIN+A ++         R ++YIGV+IDDL +KG 
Sbjct: 367 KNLFTAGQMNGTSGYEEAGGQGIVAGINAALRAQGKSGFTLGRDEAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F           + L  
Sbjct: 427 NEPYRLLTSRAEYRLLLRNDNADLRLTEYGHKLGLISDERYQEFEDKKATIKQTLAELYD 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI          A  FL  P  +I  +  +  +       V E+++
Sbjct: 487 ITIHPNDEVQAYLKSIGQSPLNAGLKASAFLRRPGVTIVAIEKLSGEKLNSDRYVREQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  +Q ++ ++++  E + IP+  DYS +  L+ E ++K   ++P ++ QA +
Sbjct: 547 IDVKYAGYIKKQELQVQKLRRLESKKIPEGIDYSKIAGLATEARQKFEKIRPESIAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA + +L +YI++  
Sbjct: 607 ISGVNPADIAILTVYIQQGK 626


>gi|325695736|gb|EGD37635.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK150]
          Length = 659

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRVTLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|323350803|ref|ZP_08086462.1| glucose inhibited division protein A [Streptococcus sanguinis
           VMC66]
 gi|322122977|gb|EFX94680.1| glucose inhibited division protein A [Streptococcus sanguinis
           VMC66]
          Length = 635

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 380/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTELGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFIRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|260588824|ref|ZP_05854737.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Blautia hansenii DSM 20583]
 gi|260540603|gb|EEX21172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Blautia hansenii DSM 20583]
          Length = 627

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/623 (40%), Positives = 373/623 (59%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV ++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 3   VLTENYDVAIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LNV KGPAV   R QAD++ Y   M++ + + E+L + 
Sbjct: 63  EIDALGGEMGKNIDKTFIQSKMLNVSKGPAVHSLRAQADKQEYTREMRKTLENTEHLTIR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E  ++  +     +  R   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVTKIMAEDGVVKGVKTYSGAEYRTKAVVLCTGTYLKARCIYGDISNETGPNGLQAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L NS  +   +  R KTGTPAR+D ++I + K E+QF DER++PFSF T  + +   QI
Sbjct: 183 YLTNSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFSTNPEDVQIDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPE
Sbjct: 243 SCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+ ++L+PTLE K
Sbjct: 303 GLSTNEMYIGGMSSSLPEDVQYEMYHSVPGLENAKIVRNAYAIEYDCIDARQLYPTLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF  GQ NG++GYEEAAAQGLVAGIN+A +    + +   R++SYIGV+IDDL +K
Sbjct: 363 NIKGLFSGGQFNGSSGYEEAAAQGLVAGINAAMEVLGREQLVLDRSESYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RL   G ++G + + +        ++       +
Sbjct: 423 ENREPYRMMTSRAEYRLLLRQDNADLRLREKGYQVGLVTQEQYDYIQWKKEKIEEETQRM 482

Query: 479 KSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           + + + +       +            +  + +  P+ S   +  +     +    V E+
Sbjct: 483 EHIHVGAVKEVQELLQQYGSTPLKNGISLGDLIRRPELSYDIVAPLDKKRPELPYDVREQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ+ + +  K  E + +PKD DY ++  L  E K+KL+  +P ++ QA
Sbjct: 543 ININIKYDGYIRRQLKQVEGFKKLENKKLPKDIDYDAISGLRIEAKQKLNAYRPISIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G++PA +++LL+Y++    
Sbjct: 603 SRIAGVSPADISVLLVYMESYRR 625


>gi|210624043|ref|ZP_03294160.1| hypothetical protein CLOHIR_02112 [Clostridium hiranonis DSM 13275]
 gi|210153250|gb|EEA84256.1| hypothetical protein CLOHIR_02112 [Clostridium hiranonis DSM 13275]
          Length = 629

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 381/623 (61%), Gaps = 4/623 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYD++V+G GHAGCEAA  +A++G  TA+IT    +I +++CNP+IGG GKGHLVREID
Sbjct: 7   ESYDIVVVGAGHAGCEAALASARMGHKTAMITMSLDSIAALACNPSIGGTGKGHLVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG   D   IQ R+LN  KGPAV   RTQAD+  Y   M++ I +QENLD+I  E
Sbjct: 67  ALGGEMGLNIDKTFIQSRMLNTAKGPAVHSLRTQADKFRYHEEMKKTIENQENLDLIMDE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   ++ ++ +  ++ R    +L TG +L   I IG++    G      +  L 
Sbjct: 127 VVEIAHDGQTVTGVITRMGAIYRAKATILATGVYLNSKIFIGEVSFNEGPNALGYAAYLT 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +S  +      R KTGTP R+   ++ + K ++Q  D +++PFSFM DKI   Q+ C +T
Sbjct: 187 DSLKELGLRMRRFKTGTPCRVHRDSVDFSKMDRQDGDAKIVPFSFMNDKIEREQVPCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  ET ++I ENIK SA+Y G+I+  GPRYCPSIEDKIVRF ++  HQIF+EPEGLNT 
Sbjct: 247 RTTAETKQMIEENIKRSAMYGGEIEGVGPRYCPSIEDKIVRFSDKETHQIFIEPEGLNTK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST+LP EIQ    +T+ GLE V ++RP YAIEYD I+P +L   LE K +  L
Sbjct: 307 EMYVQGLSTSLPFEIQKDMYKTVLGLENVKVMRPAYAIEYDCIDPTQLKLNLEIKGVENL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAAAQGL+AGIN+ RK    +     R+++YIGV++DDL +KG  EP
Sbjct: 367 FSAGQFNGTSGYEEAAAQGLIAGINAVRKIEGKEPFTLDRSEAYIGVLLDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR EYR+ LR DNAD RLT  G ++G + E R +++    +        LK + +
Sbjct: 427 YRMMTSRCEYRLYLRQDNADMRLTEKGYEIGLVTEERYQKYLAKKEMVEKEFERLKEVRV 486

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIES 540
           T K  +    +  F +     + YEFL  P+     +  +   A       V E+  I +
Sbjct: 487 TPKESNEVMEAHGFAKLNVGLSLYEFLKRPEVDYALIDELGKGAGDDVPDYVKEQCVIVT 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ +  + K  E + + +  +YS +  L  E ++KL  +KP ++ QAS+I G
Sbjct: 547 KYEGYIDKQLKQIDQFKKLESKKLSESINYSEIEGLRLEARQKLDAIKPNSVGQASRISG 606

Query: 601 MTPAALNLLLIYIKK-NTVKLNE 622
           ++PA +++LL+Y+++    K N+
Sbjct: 607 VSPADISVLLVYLEQMRRGKKND 629


>gi|323697939|ref|ZP_08109851.1| glucose inhibited division protein A [Desulfovibrio sp. ND132]
 gi|323457871|gb|EGB13736.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           ND132]
          Length = 627

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/614 (45%), Positives = 376/614 (61%), Gaps = 3/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D+IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDA
Sbjct: 10  EFDLIVVGAGHAGCEAAMASARLGLKTLLLTINVDRIGHLSCNPAIGGLAKGHMVKEIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR+LN +KGPAVR  R Q DR  Y   +QR + SQENL V Q   
Sbjct: 70  LGGMMGLWADAAGIQFRILNTRKGPAVRSSRAQIDRAEYMRVVQRSVFSQENLWVFQDMG 129

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A   TE   +S +  +   +     V+LTTGTFLRG++HIG      GRMGD  +NSL  
Sbjct: 130 AAVLTENGAVSGLRTELGEVFPARAVLLTTGTFLRGLMHIGLEHFSGGRMGDPAANSLSA 189

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +  FD GRLKTGT  RL   +I +   ++Q  D+   PFSF    +   Q+ C +T 
Sbjct: 190 SLRELGFDLGRLKTGTTPRLLRDSIDFSAMQEQPGDDPPTPFSFRNRTVPLPQVSCWLTY 249

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   H  I      S +++G I+  G RYCPSIEDK+ RF E++ HQIF+EPEGL++  
Sbjct: 250 TNERAHEAIRSGFDRSPMFTGIIEGTGARYCPSIEDKVARFPEKDRHQIFVEPEGLHSPE 309

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YP+GI T+LP ++Q + IR I GLE   I+RPGYAIEYD++ P +L PTLETK + GL+
Sbjct: 310 MYPSGIPTSLPFDVQKKMIRAIRGLENAQIVRPGYAIEYDFVPPTQLRPTLETKAVPGLY 369

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL A +N+A K    +    SR  +Y+ V++DDL +KG  EPY
Sbjct: 370 CAGQINGTSGYEEAAAQGLWAALNAACKLLGREPFLLSRDQAYMAVLVDDLVTKGTEEPY 429

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR  NAD RLTP+G  LG + + + + F    ++   +   + S+ + 
Sbjct: 430 RMFTSRAEHRLLLREGNADERLTPVGRDLGLVDDDQWRLFTAKQEKLQAVLEAMHSIRIR 489

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     SI     GK       L  P   I  L   CP+       V+   +++  
Sbjct: 490 PDAATRETLESIGASVPGKAVELASLLRQPQMDIDRLAVFCPELAGLDREVLCEAEVQVR 549

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q     + K  E +++P+D DY S+  L+ E+ EKLS ++P  L QA +I G+
Sbjct: 550 YEGYLVKQEELVAKFKSLEDKVLPEDLDYGSVSGLTREVVEKLSRIQPRTLGQAGRISGV 609

Query: 602 TPAALNLLLIYIKK 615
           TPAAL  L I++KK
Sbjct: 610 TPAALACLEIHLKK 623


>gi|157149984|ref|YP_001449347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|189039364|sp|A8AU87|MNMG_STRGC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157074778|gb|ABV09461.1| glucose inhibited division protein A [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 639

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/635 (41%), Positives = 380/635 (59%), Gaps = 13/635 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGRPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEELGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-------KNTVKLNEI 623
           S+I G+ PA +++L++Y++       KN  K N +
Sbjct: 605 SRISGVNPADISILMVYLEGKARSISKNKEKQNHV 639


>gi|254805763|ref|YP_003083984.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha14]
 gi|254669305|emb|CBA08296.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha14]
          Length = 642

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|325145389|gb|EGC67666.1| glucose-inhibited division protein A [Neisseria meningitidis
           M01-240013]
          Length = 628

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|291042834|ref|ZP_06568575.1| glucose-inhibited division protein A [Neisseria gonorrhoeae DGI2]
 gi|291013268|gb|EFE05234.1| glucose-inhibited division protein A [Neisseria gonorrhoeae DGI2]
          Length = 655

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 632 ISGVTPAAVALLMVHLKRG 650


>gi|325141207|gb|EGC63707.1| glucose-inhibited division protein A [Neisseria meningitidis CU385]
          Length = 628

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +  +  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|237797099|ref|YP_002864651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
 gi|229261234|gb|ACQ52267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
          Length = 625

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 390/618 (63%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y +G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVSGMSSSLPEDVQIKMYRSVPGLENAQILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEENPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK+ +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKNINYLDIKGLRLEAIQKLKKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|325131023|gb|EGC53749.1| glucose-inhibited division protein A [Neisseria meningitidis
           OX99.30304]
          Length = 628

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 390/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|77166531|ref|YP_345056.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani ATCC 19707]
 gi|254436296|ref|ZP_05049803.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani AFC27]
 gi|123593188|sp|Q3J6M0|MNMG_NITOC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76884845|gb|ABA59526.1| Glucose-inhibited division protein A subfamily [Nitrosococcus
           oceani ATCC 19707]
 gi|207089407|gb|EDZ66679.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosococcus oceani AFC27]
          Length = 629

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/618 (46%), Positives = 386/618 (62%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   QYEVIVVGGGHAGTEAALAAARQGVRTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLM + AD AGI FR+LN +KGPAVR  R QADR LY+  +++ +  Q  L + Q  V
Sbjct: 66  LGGLMAQAADQAGIHFRMLNARKGPAVRATRAQADRALYKAVVRKALEQQSCLSLFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  Q         VVLT GTFL G IH+G      GR GD P+N L +
Sbjct: 126 TDLVVKGERVVGVRTQLGLTFYAPAVVLTVGTFLGGRIHVGLTNHEGGRAGDPPANILSS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
              +  F   RLKTGTP R+DG++I + + E Q  D+ +  FSF+     + Q + C IT
Sbjct: 186 RLRELPFRVARLKTGTPPRIDGRSIDYSQLEVQPGDDPVPVFSFLGSAEDHPQQVSCHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTNL TH II  ++  S IYSG+I+  GPRYCPSIEDK+VRF ++  HQIF+EPEGL T 
Sbjct: 246 RTNLCTHEIIRASLDRSPIYSGEIEGIGPRYCPSIEDKVVRFSDKASHQIFIEPEGLETF 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P++L P+LET  + GL
Sbjct: 306 EIYPNGISTSLPFDVQVALVRSIQGFEQAHITRPGYAIEYDFFDPRDLKPSLETSFLQGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+N+  +  + +     R ++YIGV+IDDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLIAGLNAGLQVQEKEPWYPRRDEAYIGVLIDDLITCGTSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLTPIG +L  + E R +RF    +        L    +
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTPIGRELRVVDEVRWRRFNTKWKAIERENQRLVQQRI 485

Query: 484 TSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +S      +  +   +     E L  P  S + L  +  +       V E++ I++
Sbjct: 486 EPDKVSEGEAVTLLGEPLRREYRLIELLRRPHISYEKLMRLIGEPMAVEPAVAEQIAIQA 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ +E    +  E   +P D +Y  +  LS E++EKL+ ++P  L QA++I G
Sbjct: 546 KYAGYIERQQLEIARQQRHESLRLPLDLNYHQVRGLSVEVQEKLARVQPATLGQATRIPG 605

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAA++LLL+Y+K+   
Sbjct: 606 VTPAAISLLLVYLKRARF 623


>gi|168183720|ref|ZP_02618384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Bf]
 gi|182673272|gb|EDT85233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Bf]
          Length = 625

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 389/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAQILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEENPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK+ +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKNINYLDIKGLRLEAIQKLKKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|227511144|ref|ZP_03941193.1| glucose-inhibited division protein A [Lactobacillus buchneri ATCC
           11577]
 gi|227523331|ref|ZP_03953380.1| glucose-inhibited division protein A [Lactobacillus hilgardii ATCC
           8290]
 gi|227085626|gb|EEI20938.1| glucose-inhibited division protein A [Lactobacillus buchneri ATCC
           11577]
 gi|227089522|gb|EEI24834.1| glucose-inhibited division protein A [Lactobacillus hilgardii ATCC
           8290]
          Length = 645

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/630 (41%), Positives = 372/630 (59%), Gaps = 9/630 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+G GHAGCEAA  AA++G  T ++T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  KNYDVIVVGAGHAGCEAALAAARMGNKTLVLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAV+  R QAD+  Y   M+  + ++ NL + Q  
Sbjct: 76  ALGGEMGRNIDKTYVQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTMENEPNLTLRQAI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAKYFAKSVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            S  +  FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF +          Q+ 
Sbjct: 196 GSLEELGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDKDYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q Q + TI GLE   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQQMLHTISGLENAEMMRPGYAIEYDVVAPYQLKPTLETKI 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QG++AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGIIAGINAGRRALGQGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I + R  +F    +        L 
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISDERYAQFLSKKKAIESEIDRLN 495

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
           S+ +   ++ +  +    D   +    A  FL  P    Q L     D  +     VIE+
Sbjct: 496 SIRIKPSDVVNKFVEAHGDKPLKDGVIASVFLRRPYVDYQTLLQFISDPEQHLDRHVIEQ 555

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  + QA
Sbjct: 556 VEIQTKYAGYIAKAESSVEKMKRMEAKKIPNRIDYEAIDGIATEARQKLQKIHPETIAQA 615

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+ PA + +L +YI++  + KL + V
Sbjct: 616 SRISGVNPADIAILSVYIQQGKIAKLKKSV 645


>gi|194099972|ref|YP_002003111.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae NCCP11945]
 gi|193935262|gb|ACF31086.1| glucose-inhibited division protein A [Neisseria gonorrhoeae
           NCCP11945]
          Length = 655

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 632 ISGVTPAAVALLMVHLKRG 650


>gi|331083513|ref|ZP_08332625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404206|gb|EGG83754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 627

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/623 (40%), Positives = 373/623 (59%), Gaps = 5/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YDV ++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 3   VLTENYDVAIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LNV KGPAV   R QAD++ Y   M++ + + E+L + 
Sbjct: 63  EIDALGGEMGKNIDKTFIQSKMLNVSKGPAVHSLRAQADKQEYTREMRKTLENTEHLTIR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E  ++  +     +  R   VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVTKIMAEDGVVKGVKTYSGAEYRTKAVVLCTGTYLKARCIYGDISNETGPNGLQAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQI 238
            L NS  +   +  R KTGTPAR+D ++I + K E+QF DER++PFSF T  + +   QI
Sbjct: 183 YLTNSLKELGIEMYRFKTGTPARIDKRSIDFSKMEEQFGDERVVPFSFSTNPEDVQIDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPE
Sbjct: 243 SCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKNRHQVFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+S++LPE++Q++   ++PGLE   I+R  YAIEYD I+ ++L+PTLE K
Sbjct: 303 GLSTNEMYIGGMSSSLPEDVQYEMYHSVPGLENAKIVRNAYAIEYDCIDARQLYPTLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF  GQ NG++GYEEAAAQGLVAGIN+A +    + +   R++SYIGV+IDDL +K
Sbjct: 363 NIKGLFSGGQFNGSSGYEEAAAQGLVAGINAAMEVLGREQLVLDRSESYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RL   G ++G + + +        ++       +
Sbjct: 423 ENREPYRMMTSRAEYRLLLRQDNADLRLREKGYQVGLVTQEQYDYIQWKKEKIEEETQRM 482

Query: 479 KSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           + + + +       +            +  + +  P+ S   +  +     +    V E+
Sbjct: 483 EHVHVGAVKEVQELLEQYGSTPLKNGISLGDLIRRPELSYDIVAPLDKKRPELPYDVREQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ+ + +  K  E + +PKD DY ++  L  E K+KL+  +P ++ QA
Sbjct: 543 ININIKYDGYIRRQLKQVEGFKKLENKKLPKDIDYDAISGLRIEAKQKLNAYRPISIGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G++PA +++LL+Y++    
Sbjct: 603 SRIAGVSPADISVLLVYMESYRR 625


>gi|319639636|ref|ZP_07994383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria mucosa C102]
 gi|317399207|gb|EFV79881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria mucosa C102]
          Length = 631

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/620 (46%), Positives = 390/620 (62%), Gaps = 8/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + IQFR LN  KG AVR  R QADR LY+ A++  + +QENL++ Q  
Sbjct: 68  ALGGAMALATDKSSIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLELFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       + S VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKASAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S      +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEEQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR---KFSSLVIERL 536
            T + L+      +  ++  +    ++ L  P+     L ++ PDA+     +  V+E++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAQPETALADSVVEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P D DYS +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL++++K+ 
Sbjct: 607 RISGVTPAAVALLMVHLKRG 626


>gi|154251727|ref|YP_001412551.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parvibaculum lavamentivorans DS-1]
 gi|171769576|sp|A7HSL1|MNMG_PARL1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154155677|gb|ABS62894.1| glucose inhibited division protein A [Parvibaculum lavamentivorans
           DS-1]
          Length = 618

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/616 (55%), Positives = 437/616 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R +DVIVIGGGHAGCEAA+ AA+ GA TALITHK +TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTRDFDVIVIGGGHAGCEAASAAARAGARTALITHKLATIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVAD AGIQFR+LN +KGPAVRGPR QADR+LYR AMQ  IL+  NL+VI+
Sbjct: 61  VDALDGLMGRVADQAGIQFRLLNRRKGPAVRGPRAQADRKLYRAAMQEAILNHRNLEVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V+    E   ++ ++ +D    R   VVLTTGTFLRGVIH+G  +IPAGR+G++P+  
Sbjct: 121 GGVSDLIVEDGHVAGVIAEDGRQFRARRVVLTTGTFLRGVIHLGTQRIPAGRVGEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTP RL G +I W   E Q  D+  +PFSF+T +IT  Q+ C 
Sbjct: 181 LSDRLYGLGFQLGRLKTGTPPRLAGDSIDWSSLEVQPGDDPPVPFSFLTTEITTPQVPCH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT  E HRII +N+  S +YSG I+  GPRYCPSIEDK+VRF ER+ HQIFLEPEGL+
Sbjct: 241 ITRTTAEGHRIIEDNLHVSPVYSGQIEGVGPRYCPSIEDKVVRFRERDSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +YPNGISTALPEE+Q  F++TIPGLE V + R GYAIEYDYI+P+EL PTLETK++ 
Sbjct: 301 DDTIYPNGISTALPEEVQLAFLKTIPGLENVVMRRAGYAIEYDYIDPRELRPTLETKRLG 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AG+N+A      +     R  +Y+GVM+DDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLIAGLNAALAERGAEPFILDRAQAYMGVMVDDLITRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+  G +GERR   +    +     R L   L
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTAAGIGAGVVGERRVMAYEAKARALEAARVLCDGL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L+   L+   +   QDG  RTA + L+YPD     L  + P+       + E++ IE+ 
Sbjct: 481 RLSPTELARRGLKVNQDGVARTAMDLLAYPDIDAGVLAGVWPELAALEPHIAEQMGIEAQ 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + K  + +E   +P + DY+S+  LS+E+++KL+  +P  L QA++++G+
Sbjct: 541 YAGYLDRQDADIKAFRRDEGLRLPAEIDYASVLGLSHEVRQKLAKARPATLGQAARVDGV 600

Query: 602 TPAALNLLLIYIKKNT 617
           TPAAL  L+I++K+  
Sbjct: 601 TPAALTTLMIHVKQKR 616


>gi|78045947|ref|YP_362122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|123586143|sp|Q3BYP1|MNMG_XANC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78034377|emb|CAJ22022.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 634

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/623 (45%), Positives = 382/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EID L
Sbjct: 8   YDVIVIGGGHAGTEAALASARTGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDGL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETTRLS 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N               +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVAGALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP+ FDY+S+  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYASVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|187777373|ref|ZP_02993846.1| hypothetical protein CLOSPO_00929 [Clostridium sporogenes ATCC
           15579]
 gi|187774301|gb|EDU38103.1| hypothetical protein CLOSPO_00929 [Clostridium sporogenes ATCC
           15579]
          Length = 625

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/618 (43%), Positives = 387/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEKNVILRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E + +  I+ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IQIDVEDHKVKGILTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ DK+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHDKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +TH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEQTHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAGINS  K    D +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLVAGINSVLKIKGEDPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        LK++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKIGLVKEDRYDKFLNRKKNVESEVERLKNVQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPDLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYPDVKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|254282249|ref|ZP_04957217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR51-B]
 gi|219678452|gb|EED34801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR51-B]
          Length = 632

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/622 (45%), Positives = 396/622 (63%), Gaps = 5/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A+ GAST L+TH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 5   QQFDVIVIGGGHAGTEAALASARSGASTLLLTHSVDTLGQMSCNPAIGGIGKSHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  DAAGIQFRVLN +KGPAVR  R QADR LYR A++ ++L+Q+NL V Q  
Sbjct: 65  ALGGAMAKATDAAGIQFRVLNARKGPAVRATRAQADRVLYRNAIREQLLNQQNLLVFQDS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   ++  V +         VVLT GTFLRG IH+G      GRMGD  S  L 
Sbjct: 125 VEDVIIEGTRVAGAVTRTGLRFLSRAVVLTAGTFLRGKIHVGLENSEGGRMGDPASVGLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +   +    T RLKTGTP R+D +++ +   E Q+ DE     S +  +  +  Q  C I
Sbjct: 185 DRLRELCPRTDRLKTGTPPRIDARSVDFSVMETQWGDEPRPVMSVLGHRDQHPEQRCCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T+TN  TH II   +  S ++SG I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T
Sbjct: 245 TKTNERTHDIIRGALDRSPLFSGVIEGTGPRYCPSIEDKIHRFSDKSSHQLFVEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP + Q   +++I G E+ +I RPGYAIEYDY +P++L  +LET+ + G
Sbjct: 305 TELYPNGISTSLPFDTQLALVQSIAGFERAHITRPGYAIEYDYFDPRDLKHSLETRGVQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR++         R ++YIGV++DDL + G LE
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGLNAARQTRDQVAWEPRRDEAYIGVLVDDLVTHGTLE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP G  +G + + + + F++  +          +  
Sbjct: 425 PYRMFTSRAEYRLLLREDNADLRLTPAGRSMGLVLDPQWQHFSQKREAIEQETERFNTTF 484

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   + ++ ++  K D    +  +  + L  P+    ++ ++  +A      V  ++  +
Sbjct: 485 IQPNSPAALTLQSKIDKPLSREYSLSDLLRRPELGYGDVAALAGNAVD-DEQVALQVATQ 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  E   ++  E   IP+D DY+++  LSNE+K+KL   +P ++ +AS+I 
Sbjct: 544 IKYAGYITRQQEEIDRLQRLESTPIPEDMDYATVSGLSNEIKQKLEAARPTSIARASRIA 603

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G+TPAAL+LL I+IKK+  + +
Sbjct: 604 GITPAALSLLAIHIKKHRSEYS 625


>gi|59802107|ref|YP_208819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA 1090]
 gi|81170561|sp|Q5F5Y0|MNMG_NEIG1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|59719002|gb|AAW90407.1| putative glucose inhibited division protein A [Neisseria
           gonorrhoeae FA 1090]
          Length = 628

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|291548775|emb|CBL25037.1| glucose-inhibited division protein A [Ruminococcus torques L2-14]
          Length = 630

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/614 (42%), Positives = 371/614 (60%), Gaps = 5/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 14  EYDVVVVGAGHAGCEAALATARLGFKTVIFTVSVDSIALMPCNPNIGGSSKGHLVRELDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +QENLD+ Q EV
Sbjct: 74  LGGEMGKVIDQTFIQSKMLNSSKGPAVHSLRAQADKANYSKTMRQVLQNQENLDIRQMEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +     ++ RC  VVL TGT+L+     G++    G  G   +N L +
Sbjct: 134 TEILAEDGKITGVQTYSGAIYRCKAVVLCTGTYLKARCIYGEISTHTGPNGLQSANYLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S         R KTGTPAR+D  TI + K ++Q  DER++PFSF TD   +   Q  C +
Sbjct: 194 SLKALGIKMYRFKTGTPARIDKNTIDFSKMQEQKGDERVVPFSFTTDPESVQIDQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL T
Sbjct: 254 TYTNETTHEIIRGNLDRSPLYSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFIEPEGLET 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L  TLE K+I G
Sbjct: 314 NEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLKSTLEFKEIEG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF  GQ NG++GYEEAA+QGL+AGIN+ARK    + I   R+  YIGV+IDDL +K   E
Sbjct: 374 LFSGGQFNGSSGYEEAASQGLIAGINAARKLQGKEGIVIDRSQGYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT IG ++G I E R ++  K  +        ++   
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADMRLTKIGYEVGLIDEERYQKLLKKEEMIEKEIERVEHTN 493

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           + +       +            T  E +  P+ S + +  I     +    V E++ I 
Sbjct: 494 VGTTEAVQALLESYESTPLTSGTTLAELIRRPELSYEKIAPIDKHREELPYDVKEQVDIN 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + ++ K  E + IP++ +Y  + +L  E K+KL+ ++P ++ QAS+I 
Sbjct: 554 IKYDGYIKRQMRQVEQFKKLENKRIPENINYDEIQSLRLEAKQKLNQIRPSSIGQASRIS 613

Query: 600 GMTPAALNLLLIYI 613
           G++PA +++LL+Y+
Sbjct: 614 GVSPADVSVLLVYL 627


>gi|254494666|ref|ZP_05107837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae 1291]
 gi|226513706|gb|EEH63051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae 1291]
          Length = 631

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|327467650|gb|EGF13147.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK330]
          Length = 635

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 377/623 (60%), Gaps = 6/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 125 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYQDVVQFIGPAAEELDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++Y++  + 
Sbjct: 605 SRISGVNPADISILMVYLEGKSR 627


>gi|209883524|ref|YP_002287381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oligotropha carboxidovorans OM5]
 gi|254811516|sp|B6JAJ1|MNMG_OLICO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|209871720|gb|ACI91516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oligotropha carboxidovorans OM5]
          Length = 624

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/621 (54%), Positives = 445/621 (71%), Gaps = 1/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +++DVIV+GGGHAGCEAAA +A+LGA TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRKTFDVIVVGGGHAGCEAAAASARLGAETALLTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR+AD  GIQFRVLN +KGPAVRGPR Q DR LY  AMQ EI +  +L VI+
Sbjct: 61  IDALDGLMGRMADTGGIQFRVLNRRKGPAVRGPRAQIDRALYAAAMQAEIRATPHLSVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      + + I+ + + D     C  VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADALVLKDDRIAGLKLADGREFSCRAVVITTGTFLRGIIHLGETSWPAGRINEAPAMG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTPARLDG TI W   E+Q  D+   PFS +T++IT  Q+ECG
Sbjct: 181 LSKSFEQIGFTLGRLKTGTPARLDGTTIDWAAVERQPGDDPAEPFSTLTEEITTPQVECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I EN+  S +YSG I+S GPRYCPSIEDKIVRFG+R+ HQIFLEPEGL 
Sbjct: 241 ITRTTTATHAVIRENVHRSPLYSGQIQSIGPRYCPSIEDKIVRFGDRDSHQIFLEPEGLK 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE+  +IRPGYAIEYD+++P+EL PTLET+++ 
Sbjct: 301 DTTVYPNGISTSLPEEVQKAILTTIPGLERTRMIRPGYAIEYDHVDPRELEPTLETRRVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+AR +   + + F R D Y+GVMIDDLTS+GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAARTAGGKEGVIFDRADGYLGVMIDDLTSRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LG +G  RQ +F   ++  +  +   KSL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTWRGLALGVVGFARQAQFDAKMRALDAAKEAAKSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT        ++  +DG+ R+A+E L+YP+    ++  I P   + +  + E ++I++ 
Sbjct: 481 SLTPTEGIRHGLALNRDGQRRSAFELLAYPEIGWADVARIWPQLAEVTPDIAEHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +    + +E  ++    DY+ +P LSNE ++KL   +P  + QA++IE M
Sbjct: 541 YDVYLARQAADVSAFRRDEALVL-SGVDYADVPGLSNEARQKLQKAQPRTIGQAARIEAM 599

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           TPAAL +L  Y+++ +   ++
Sbjct: 600 TPAALGILTAYLRRRSRHRSD 620


>gi|324991890|gb|EGC23813.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK405]
 gi|324996220|gb|EGC28130.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK678]
 gi|327458515|gb|EGF04865.1| glucose inhibited division protein A [Streptococcus sanguinis SK1]
          Length = 659

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 379/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+   Q++   I P A +    +IE 
Sbjct: 509 SIKLKPVKETNAKVEALGFKPLTDAVTAKEFMRRPEVYYQDVVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|319411321|emb|CBY91732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           Glucose-inhibited division protein A [Neisseria
           meningitidis WUE 2594]
          Length = 642

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 YEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|261391729|emb|CAX49178.1| glucose-inhibited division protein A [Neisseria meningitidis 8013]
          Length = 628

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S   +  +  RQ+ C I
Sbjct: 185 GRLHELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|1780760|emb|CAA71459.1| unnamed protein product [Coxiella burnetii]
          Length = 627

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/621 (46%), Positives = 394/621 (63%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI +GGGHAG EAA VAA++GA T L+TH   T+G MSCNPAIGG+GK HLV+EI
Sbjct: 5   SQQFDVIAVGGGHAGTEAALVAARMGARTLLLTHNIETLGQMSCNPAIGGIGKSHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M   AD AGI FR LN +KGPAVR  R QADR LY+ A+   + +Q +L + Q 
Sbjct: 65  DALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQQ 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + N  + +V Q        TV+LT GTFL G IHIG      GR GD P+ +L
Sbjct: 125 GVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALAL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                +  F   RLKTGTP R+DG+TI + +  +Q +D+ L   S+ +  +   RQ+ C 
Sbjct: 185 AERLREMPFRVERLKTGTPPRIDGRTINYYQLIEQPSDQPLPLMSYWSHGEDHPRQVSCF 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT+TN +TH II   +K S ++SG I+  GPRYCPSIEDKIVRF +RN H++FLEPEG+N
Sbjct: 245 ITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHRLFLEPEGIN 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNG+ST+L  ++Q   I +  GL K +I RPGY IEYDY +P++L P+LETK + 
Sbjct: 305 TPEVYPNGLSTSLSFDVQLDVIHSKTGLAKCHITRPGYTIEYDYFDPRDLKPSLETKYVP 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AGIN+A +  +      +R ++YIGV+IDDLT++G  
Sbjct: 365 GLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRGTN 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G  LGC+ + R   F K  +     +  LK  
Sbjct: 425 EPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLKKQ 484

Query: 482 VLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
            +  K+  + +I  +      +  +A + L  P+ +   L  I           V E++ 
Sbjct: 485 RIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELGPAVLEPSVAEQID 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y   Q+ E    K  +   IP   DY+ +  LSNE+++KL+  KP  L QAS+
Sbjct: 545 IQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKPTTLGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++LLL+++KK  +
Sbjct: 605 IPGITPAAISLLLVHLKKKEL 625


>gi|240081631|ref|ZP_04726174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA19]
 gi|268597727|ref|ZP_06131894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae FA19]
 gi|268599974|ref|ZP_06134141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae MS11]
 gi|268551515|gb|EEZ46534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae FA19]
 gi|268584105|gb|EEZ48781.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae MS11]
          Length = 631

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|205375718|sp|A1KRM5|MNMG_NEIMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 628

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S      +  RQ+ C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSADMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|240113912|ref|ZP_04728402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae MS11]
          Length = 642

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|240015042|ref|ZP_04721955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae DGI18]
 gi|240122110|ref|ZP_04735072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID24-1]
          Length = 642

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP++GG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSVGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|104774815|ref|YP_619795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|123378327|sp|Q1G7Z5|MNMG_LACDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|103423896|emb|CAI98938.1| GidA (Glucose inhibited division protein A) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 363/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +  +     Q  
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTDQTS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPEG
Sbjct: 245 CWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK+
Sbjct: 305 RKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG
Sbjct: 365 IKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R   F    +        L 
Sbjct: 425 TEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLAKKELIQEDLDRLG 484

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +          A  FL  P  +++++  +          V E++
Sbjct: 485 EITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYVKEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L QA 
Sbjct: 545 EIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETLAQAE 604

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA L +L +Y++   
Sbjct: 605 RISGVNPADLAILSVYVQNGK 625


>gi|116514944|ref|YP_813850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274324|sp|Q047G0|MNMG_LACDB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116094259|gb|ABJ59412.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 631

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 362/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +  +     Q  
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTDQTS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPEG
Sbjct: 245 CWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK+
Sbjct: 305 RKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG
Sbjct: 365 IKHLYTAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R   F    +        L 
Sbjct: 425 TEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLAKKELIQEDLDRLG 484

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +          A  FL  P  +++++  +          V E++
Sbjct: 485 EITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYVKEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L QA 
Sbjct: 545 EIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETLAQAE 604

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA L +L +Y++   
Sbjct: 605 RISGVNPADLAILSVYVQNGK 625


>gi|328945149|gb|EGG39304.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1087]
          Length = 659

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 379/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L+
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADIRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLE 508

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S ++    I P A +    +IE 
Sbjct: 509 SIKLKPIKETNAKVEALGFKPLTDAVTAKEFMRRPEVSYKDAVQFIGPAAEELDEKIIEL 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 569 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 628

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 629 SRISGVNPADISILMVYLEGKSRSISK 655


>gi|121634068|ref|YP_974313.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis FAM18]
 gi|120865774|emb|CAM09503.1| glucose inhibited division protein A [Neisseria meningitidis FAM18]
          Length = 631

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S      +  RQ+ C I
Sbjct: 188 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIQG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|268604574|ref|ZP_06138741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID1]
 gi|268588705|gb|EEZ53381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID1]
          Length = 631

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|237809878|ref|YP_002894318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Tolumonas auensis DSM 9187]
 gi|259495855|sp|C4LDX1|MNMG_TOLAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|237502139|gb|ACQ94732.1| glucose inhibited division protein A [Tolumonas auensis DSM 9187]
          Length = 629

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/622 (44%), Positives = 394/622 (63%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YHDQFDVIVVGGGHAGTEAATAAARMGMKTLLLTHNIETLGHMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ G+M +  D AGIQFR+LN  KGPAVR  R QADR LY+  ++  + +  NL + Q
Sbjct: 63  VDAMGGIMAQAIDHAGIQFRILNSSKGPAVRATRAQADRLLYKQTIRHTLENYPNLQLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +V Q    I   TVVLT GTFL G+IHIG      GR GD  S +
Sbjct: 123 QACDDLILEGDRVCGVVTQAGIRILSKTVVLTAGTFLNGLIHIGMEHYRGGRSGDPASVT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +     GRLKTGTP R+D +++ + + + Q  D+ +  FS++     + RQ+ C
Sbjct: 183 LAERMREMPLRVGRLKTGTPPRIDARSVDFSQLQMQLGDDPVPVFSYLGKPEQHPRQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN++TH +I  N+  S +Y+G I+  GPRYCPSIEDKI+RF +++ HQIF+EPEGL
Sbjct: 243 FITHTNVQTHDVIRANLDRSPMYAGVIEGIGPRYCPSIEDKIMRFADKDAHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q Q +R++ G    +I RPGYAIEYD+ +P++L P +E K +
Sbjct: 303 TTHELYPNGISTSLPFDVQVQIVRSMKGFANAHIARPGYAIEYDFFDPRDLKPNMENKCL 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG++AGIN+A ++   D     R  +YIGV++DDL++ G 
Sbjct: 363 QNLFFAGQINGTTGYEEAAAQGMLAGINAALRAQDKDPWAPRRDQAYIGVLMDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G +LG + + R   F   ++     +  L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLTPVGRELGLVNDERWAFFNHKLEMMAQEQQRLQD 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERL 536
             +  ++ ++  ++        +  +  + L  P+ + Q+L +I             E++
Sbjct: 483 TWIQPQHPATEGLNKILKTPLSRPASLEDLLRRPEVNYQDLMAIEGVGPGIEHPQASEQI 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  RQ  E  +    E+ L+P D DYS +P LS E+  KL+  KP  + QAS
Sbjct: 543 EIQVKYAGYIDRQQDEIDKQLRHEETLLPLDLDYSEVPGLSKEVCIKLNDTKPQTIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TPAA+++LL+++KK  +
Sbjct: 603 RISGVTPAAISILLVHLKKRGL 624


>gi|218767114|ref|YP_002341626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis Z2491]
 gi|21263693|sp|Q9JX41|MNMG_NEIMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|121051122|emb|CAM07393.1| glucose inhibited division protein A homolog [Neisseria
           meningitidis Z2491]
 gi|325133107|gb|EGC55779.1| glucose-inhibited division protein A [Neisseria meningitidis M6190]
 gi|325139085|gb|EGC61631.1| glucose-inhibited division protein A [Neisseria meningitidis
           ES14902]
          Length = 628

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 YEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|291165908|gb|EFE27955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Filifactor alocis ATCC 35896]
          Length = 629

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/617 (43%), Positives = 381/617 (61%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A+LG  T ++T     IG M CNPAIGG GK  LV+EIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALASARLGKKTLMVTLSLDAIGHMPCNPAIGGTGKSQLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D + IQ R LN  KGPAV+  R QAD+ LY   M++ +   ENLD++  EV
Sbjct: 67  LGGEMGQNIDKSFIQSRTLNSSKGPAVQSVRAQADKNLYHREMKKVLEGVENLDIVMDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +S +  + N      TV+L+TG FL G + +G++  P+G +G  P+  L  
Sbjct: 127 TSLIHDGKSVSGVRTKLNCEYFGKTVILSTGVFLNGRVFMGEVNFPSGPLGQIPAEQLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
           S  + +    R KTGTPAR+   +I + K + Q  D  + PFSFM D +    ++ C +T
Sbjct: 187 SLKELNLPLRRFKTGTPARVHADSIDFSKMQLQEGDAEIEPFSFMNDYLPEGNKVVCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II EN++ SA+Y G I S GPRYCPSIEDK+VRF ++  HQ F+EPEGL+T 
Sbjct: 247 RTTQKTHDIIRENLQRSAMYGGFIDSKGPRYCPSIEDKVVRFSDKESHQFFVEPEGLDTK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G S+++  E+Q +   T+ GLE  +++RP YAIEYD I+P  L P+LE   +  L
Sbjct: 307 EYYIQGFSSSMAYEVQLEMYHTVLGLEHCHMMRPAYAIEYDCIDPLRLKPSLEIMGVENL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAAAQGL+AGIN++RK + L+ I   R  +YIGV+IDDL +KG  EP
Sbjct: 367 FSAGQFNGTSGYEEAAAQGLMAGINASRKIDGLEPIILDRATAYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT +G K+G +   R +RF    ++     + LK   +
Sbjct: 427 YRMMTSRAEYRLLLRQDNADLRLTELGYKIGLVKPERYERFLAKKEQIAEEINRLKKEKI 486

Query: 484 TSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++       +    +T + YE L  P+ +   L S+          V ++ +I + 
Sbjct: 487 KPEEINPLLEKMGKAPFTRTISLYEALKRPEITYPLLASLGKTHESLPVQVQKQAEITAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  +  EKR +P+  DYS +  L  E ++KL+ ++PFN+ QAS+I G+
Sbjct: 547 YEGYIKKQIEQVESFRKLEKRQLPESMDYSLIEGLRLEARQKLNEIRPFNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLIY+K+ + 
Sbjct: 607 SPADISVLLIYMKQQSA 623


>gi|240017490|ref|ZP_04724030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae FA6140]
 gi|240118867|ref|ZP_04732929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID1]
 gi|260439595|ref|ZP_05793411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae DGI2]
          Length = 642

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|260437682|ref|ZP_05791498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio crossotus DSM 2876]
 gi|292809908|gb|EFF69113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio crossotus DSM 2876]
          Length = 627

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 375/621 (60%), Gaps = 5/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD+ V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREID
Sbjct: 5   EEYDIAVVGAGHAGCEAALACARLGLETIMFTVSVESIALMPCNPNIGGSSKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG   D   IQ ++LN  KGPAV   R QAD+  Y   M++ + + E+L + Q E
Sbjct: 65  ALGGEMGVNIDKTFIQSKMLNQSKGPAVHSLRAQADKSEYSATMRKTLENTEHLTIRQAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E  +I  +     +      VVL TGT+L+     G +    G  G   +N L 
Sbjct: 125 VAELMAENGVIKGVKTFSGAEYYTKAVVLCTGTYLKARCIFGDISYYTGPNGLLAANYLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
            S  K   +  R KTGTPAR+DG+TI +DK E+QF D++++PFSF TD   I   Q  C 
Sbjct: 185 ESMKKLGIEIVRFKTGTPARVDGRTIDFDKMEEQFGDKKIVPFSFTTDPESIQKEQRSCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH+II +NI  S +YSG I   GPRYCPSIEDK++RF +++ HQ+F+EPEG  
Sbjct: 245 LTYTNEDTHKIIRDNIDRSPLYSGVIHGTGPRYCPSIEDKVMRFKDKDRHQVFIEPEGNY 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G+S++LPE++Q+   +T+PGLE   I+R  YAIEYD INP +L  +LE K IS
Sbjct: 305 THEYYLGGMSSSLPEDVQYAMYKTVPGLEHAKIVRNAYAIEYDCINPNQLKSSLEFKNIS 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF  GQ+NG++GYEEAAAQGL+AGIN+A K    +     R+++YIGV+IDDL +K   
Sbjct: 365 GLFSGGQLNGSSGYEEAAAQGLIAGINAAMKVLNKEPFILDRSEAYIGVLIDDLVTKENK 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RL   G ++G + + R  +  + I+  +     LK++
Sbjct: 425 EPYRMMTSRAEYRLLLRQDNADIRLYKQGHRIGLLSDERYNKVVEKIKAIDNEIERLKNV 484

Query: 482 VL-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +  S+ +++  I ++        +  E +  P+ + + L  I  +  +  + VIE++ I
Sbjct: 485 SVGGSEKVNNLLIRYESTPLNNGASLAELIRRPELNYEILGEIDENRPQLDADVIEQVNI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  R+  + +  K  E +LIP D D+  +  L  E K+KL    P ++ QAS+I
Sbjct: 545 NIKYEGYILREQKQVEHFKKLENKLIPADIDFDDISGLRIEAKQKLKNYSPRSIGQASRI 604

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++PA + +LL+Y++++  K
Sbjct: 605 SGVSPADITVLLVYMEQHRRK 625


>gi|238926047|ref|YP_002939565.1| glucose-inhibited division protein A [Eubacterium rectale ATCC
           33656]
 gi|238877724|gb|ACR77431.1| glucose-inhibited division protein A [Eubacterium rectale ATCC
           33656]
          Length = 646

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/620 (43%), Positives = 383/620 (61%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 6   VEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q
Sbjct: 66  IDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIRQ 125

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           GEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +N
Sbjct: 126 GEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAAN 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L  S +    +  R KTGTPAR+D +++ + K E+QF D+R++PFSF TD   +   Q+
Sbjct: 186 HLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDDRVVPFSFTTDPESVQIDQV 245

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EPE
Sbjct: 246 SCWLTYTNSKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEPE 305

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE K
Sbjct: 306 GLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEFK 365

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +K
Sbjct: 366 KIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVTK 425

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R     K  +  +     +
Sbjct: 426 KNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKERYDYVCKKKELIDKEIERV 485

Query: 479 KSLVLTSK-NLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             + + ++ ++      +   +     T  E +  P+     L  I PD  K S    E+
Sbjct: 486 SHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPDRPKLSDDTREQ 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL+  +P ++ QA
Sbjct: 546 INILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKLNEFQPLSIGQA 605

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++LL+++++
Sbjct: 606 SRISGVTPADISVLLVFLEQ 625


>gi|291529194|emb|CBK94780.1| glucose-inhibited division protein A [Eubacterium rectale M104/1]
          Length = 646

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/620 (43%), Positives = 384/620 (61%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 6   VEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q
Sbjct: 66  IDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIRQ 125

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           GEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +N
Sbjct: 126 GEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAAN 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L  S +    +  R KTGTPAR+D +++ + K E+QF DER++PFSF TD   +   Q+
Sbjct: 186 HLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDERVVPFSFTTDPESVQIDQV 245

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EPE
Sbjct: 246 SCWLTYTNNKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEPE 305

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE K
Sbjct: 306 GLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEFK 365

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +K
Sbjct: 366 KIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVTK 425

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R     K  +  +     +
Sbjct: 426 KNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKERYDYVCKKKELIDKEIERV 485

Query: 479 KSLVLTSK-NLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             + + ++ ++      +   +     T  E +  P+     L  I PD  K S  + E+
Sbjct: 486 SHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPDRPKLSDDIREQ 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL+  +P ++ QA
Sbjct: 546 INILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKLNEFQPLSIGQA 605

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++LL+++++
Sbjct: 606 SRISGVTPADISVLLVFLEQ 625


>gi|148381579|ref|YP_001256120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930874|ref|YP_001385956.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936277|ref|YP_001389363.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. Hall]
 gi|166222925|sp|A7FPL9|MNMG_CLOB1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222926|sp|A5I815|MNMG_CLOBH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148291063|emb|CAL85200.1| glucose inhibited division protein A [Clostridium botulinum A str.
           ATCC 3502]
 gi|152926918|gb|ABS32418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932191|gb|ABS37690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. Hall]
          Length = 625

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 389/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     + S+       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVESLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|21263694|sp|Q9K1G0|MNMG_NEIMB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|325199405|gb|ADY94860.1| glucose-inhibited division protein A [Neisseria meningitidis
           H44/76]
          Length = 628

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +  +  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|304389000|ref|ZP_07371047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis ATCC 13091]
 gi|304337134|gb|EFM03321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis ATCC 13091]
          Length = 631

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSTEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|268683031|ref|ZP_06149893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID332]
 gi|268623315|gb|EEZ55715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID332]
          Length = 631

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|293398147|ref|ZP_06642352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae F62]
 gi|291611410|gb|EFF40480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae F62]
          Length = 655

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP++GG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSVGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TP A+ LL++++K+ 
Sbjct: 632 ISGVTPTAVALLMVHLKRG 650


>gi|240124404|ref|ZP_04737360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID332]
          Length = 642

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|15676120|ref|NP_273251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis MC58]
 gi|7225413|gb|AAF40650.1| glucose inhibited division protein A [Neisseria meningitidis MC58]
          Length = 631

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +  +  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|326202765|ref|ZP_08192632.1| glucose inhibited division protein A [Clostridium papyrosolvens DSM
           2782]
 gi|325986842|gb|EGD47671.1| glucose inhibited division protein A [Clostridium papyrosolvens DSM
           2782]
          Length = 627

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/622 (44%), Positives = 395/622 (63%), Gaps = 6/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+ VIG GHAGCEAA  AA+LG ST + +    +I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   SYDIAVIGAGHAGCEAALAAARLGCSTIVFSINLDSIANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ ++LN  KGPAV   R Q DR  Y++ M+  + +QENLD+ Q EV
Sbjct: 67  LGGQMGKTTDKTFIQSKILNSSKGPAVYSLRAQVDRRQYQMEMKHILETQENLDIRQAEV 126

Query: 125 AGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               T+     ++ +     ++ +C  +VLTTGT+L+G I IG +    G  G  P+N L
Sbjct: 127 IEVLTDETGTSVTGVKTHTGAIFQCKAIVLTTGTYLQGKIFIGDVNYSGGPDGLFPANRL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S      +  R KTGTPARL+ +++ + K  +Q  D+ ++PFSF T+KI   Q+ C +
Sbjct: 187 SESLQNIGIELLRFKTGTPARLNKRSLDFSKMSEQPGDDVIVPFSFETEKIEKDQVPCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I +NI  S +YSG+I   GPRYCPSIEDK+VRF ++  HQ+F+EP G+ T
Sbjct: 247 TYTNADTHEVIKKNIHRSPLYSGNITGIGPRYCPSIEDKVVRFSDKEHHQVFVEPMGIGT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q +F+RTIPGLE V ++R  YAIEYD I+  +L  +LE KKI G
Sbjct: 307 EEMYLQGMSSSLPEDVQVEFMRTIPGLENVKVMRSAYAIEYDGIDATQLKLSLEYKKIEG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQING++GYEEAAAQG+VAGIN+A K    + +   R+ +YIGV+IDDL +KG  E
Sbjct: 367 LFSAGQINGSSGYEEAAAQGIVAGINAAMKIQNREPLILDRSQAYIGVLIDDLVTKGTKE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT +G ++G I E R ++F K  +        LK+  
Sbjct: 427 PYRMMTSRAEYRLLLRQDNADLRLTSLGREIGLISEERYEKFLKKKELIEKEIERLKNTY 486

Query: 483 LTSKNLSSTSISFKQDGKTRTAYE---FLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L         +  +     ++  +    L  P+ S ++L  +C +  +    V E++++ 
Sbjct: 487 LPPSEAVLKYLESRNSTAIKSGIQVTELLRRPEISYESLSQVC-ELPELPRAVREQVEVA 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQM + ++ K  E R IP+  DY+ +  L  E ++KLS ++P ++ QAS+I 
Sbjct: 546 VKYEGYIKRQMQQVEQYKKLEGRKIPQPIDYNEIQGLRLEARQKLSQIRPDSIGQASRIT 605

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G++PA +++LLIY+++   + N
Sbjct: 606 GVSPADISVLLIYLEQVNRRKN 627


>gi|114332389|ref|YP_748611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrosomonas eutropha C91]
 gi|122312971|sp|Q0ADD6|MNMG_NITEC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114309403|gb|ABI60646.1| glucose inhibited division protein A [Nitrosomonas eutropha C91]
          Length = 641

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/624 (45%), Positives = 400/624 (64%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +R +D+IV+GGGHAG EAA  AA++G  T L+T    T+G MSCNP+IGG+GKGHLV+E
Sbjct: 3   FSRDFDIIVVGGGHAGTEAALAAARMGQKTLLLTQNLDTLGQMSCNPSIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D AGIQFR LN  KGPAVR  R QADR LYR A+++ + +Q NL ++Q
Sbjct: 63  IDALGGAMAAAIDEAGIQFRTLNSSKGPAVRATRAQADRVLYRQAIRKRLEAQPNLLILQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V       + I+ +            VVLT GTFL G+ H+G     AGR GD  S  
Sbjct: 123 STVDDLLLLDDKITGVATHLGITFSARAVVLTVGTFLGGLAHVGDRNFQAGRAGDPASIR 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L +   + +   GRLKTGTP R+D +TI +    +Q  DE +  FSF+ +   + RQ+ C
Sbjct: 183 LAHRLREMNLSVGRLKTGTPPRIDARTIDFQFLREQPGDEPIPTFSFLGNTAQHPRQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRTN +TH II   + HS +Y+G I+  GPRYCPSIEDK+VRF +R+ H +FLEPEGL
Sbjct: 243 WMTRTNEKTHEIIRAGLDHSPLYTGKIEGIGPRYCPSIEDKVVRFSDRDSHTVFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+L  E+Q + +R+I GLE  +I RPGYAIEYDY +P+ L  +LETK I
Sbjct: 303 ETSEIYPNGISTSLSFEVQVELVRSIAGLENAHITRPGYAIEYDYFDPRALKRSLETKAI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N++ K  + +  C SR ++Y+GV++DDL ++GV
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLLAGLNASLKIKEQESWCPSRDEAYLGVLVDDLVTRGV 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLT  G + G + E+R + FA   +     ++ L+ 
Sbjct: 423 TEPYRMFTSRAEFRLQLREDNADMRLTEAGHQFGLVDEKRWQIFAAKREAIETEKARLRR 482

Query: 481 LVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
             + +     L +   S + D ++ + YE L  P  S   L S+   ++      + ++L
Sbjct: 483 TWVPAGVLHKLQTLQTSDQSDDRSYSLYELLRRPGISYTELVSLSEVESSMIDGRIAQQL 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E       E  ++PK+ DYS++  LSNE+ +KL+  +P  + QA+
Sbjct: 543 EIDVKYEGYVERQRQEVVRHTQHETMVLPKNLDYSTVRGLSNEVTQKLNQHQPETIGQAA 602

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+TPAA++LLL+++K+   + 
Sbjct: 603 RISGITPAAISLLLVHLKRGMARQ 626


>gi|268602312|ref|ZP_06136479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID18]
 gi|268586443|gb|EEZ51119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae PID18]
          Length = 631

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +   +   + C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPHQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|325143206|gb|EGC65546.1| glucose-inhibited division protein A [Neisseria meningitidis
           961-5945]
 gi|325197480|gb|ADY92936.1| glucose-inhibited division protein A [Neisseria meningitidis G2136]
          Length = 628

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 381/619 (61%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKATIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS +V       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVVTAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S       +   + C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSAEMHPHQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 485 YTPQKLAEDEQIRVFGQKLNREANLHDLLRRPNLDYTALMTLEGAMPSERLSAEVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|240116644|ref|ZP_04730706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae PID18]
          Length = 642

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +   +   + C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPHQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|291526552|emb|CBK92139.1| glucose-inhibited division protein A [Eubacterium rectale DSM
           17629]
          Length = 646

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/620 (43%), Positives = 383/620 (61%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 6   VEENYDVVVVGAGHAGCEAALACARLGLETIVFTVSVDSIALMPCNPNIGGSSKGHLVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q
Sbjct: 66  IDALGGEMGKNIDKTFIQSKMLNKSKGPAVHSLRAQADKAEYSMEMRKTLQNTDHLTIRQ 125

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           GEV+   T E N I        ++  C  +VL TGT+LR     G++    G  G   +N
Sbjct: 126 GEVSEIVTDENNNIVGAKTTSGALYHCKAIVLCTGTYLRARCLTGEMITHTGPNGLLAAN 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L  S +    +  R KTGTPAR+D +++ + K E+QF DER++PFSF TD   +   Q+
Sbjct: 186 HLTQSLIDHGIEMRRFKTGTPARVDKRSLDFSKMEEQFGDERVVPFSFTTDPESVQIDQV 245

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F E+  HQIF+EPE
Sbjct: 246 SCWLTYTNSKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFAEKERHQIFIEPE 305

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLNT+ +Y  G+S+++PE++Q++  RT+PGLE V I+R  YAIEYD IN  +L+ +LE K
Sbjct: 306 GLNTNEMYVGGMSSSMPEDVQYEMYRTLPGLENVKIVRDAYAIEYDCINANQLYASLEFK 365

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF  GQ NG++GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL +K
Sbjct: 366 KIHGLFSGGQFNGSSGYEEAACQGLIAGINAAMKILGKKPLILDRSEAYIGVLIDDLVTK 425

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + R     K  +  +     +
Sbjct: 426 KNREPYRMMTSRAEYRLLLRQDNADLRLTEKGYEVGLISKERYDYVCKKKELIDKEIERV 485

Query: 479 KSLVLTSK-NLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             + + ++ ++      +   +     T  E +  P+     L  I PD  K S    E+
Sbjct: 486 SHVNIGARADVQEILKKYNSIELSNGTTLEELIRRPELDYDKLAPIDPDRPKLSDDTREQ 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   YA Y  RQ+ +    K  EK+L+P DFDY+++  L  E ++KL+  +P ++ QA
Sbjct: 546 INILIKYAGYISRQIKQVSHFKKLEKKLLPTDFDYNTISGLRIEAQQKLNEFQPLSIGQA 605

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++LL+++++
Sbjct: 606 SRISGVTPADISVLLVFLEQ 625


>gi|227508119|ref|ZP_03938168.1| glucose-inhibited division protein A [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227192348|gb|EEI72415.1| glucose-inhibited division protein A [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 645

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/630 (41%), Positives = 370/630 (58%), Gaps = 9/630 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+G GHAGCEAA  AA++G  T ++T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  KNYDVIVVGAGHAGCEAALAAARMGNKTLVLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAV+  R QAD+  Y   M+  + ++ NL + Q  
Sbjct: 76  ALGGEMGRNIDKTYVQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTMENEPNLTLRQAI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAKYFAKSVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            S  +  FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF +          Q+ 
Sbjct: 196 GSLEELGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDKDYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q Q + TI GLE   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQQMLHTISGLENAEMMRPGYAIEYDVVAPYQLKPTLETKI 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QG++AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGIIAGINAGRRALGQGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I + R  +F    +        L 
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISDERYAQFLSKKRAIESEIDRLN 495

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER 535
           S+ +   +  +  +    D   +    A  FL  P    Q L     D        VIE+
Sbjct: 496 SIRIKPSDAVNKFVEAHGDKPLKDGVIASVFLRRPYVDYQTLLQFISDPEHHLDRHVIEQ 555

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  + QA
Sbjct: 556 VEIQTKYAGYIAKAESSVEKMKRMEAKKIPNRIDYEAIDGIATEARQKLQKIHPETIAQA 615

Query: 596 SKIEGMTPAALNLLLIYIKKNTV-KLNEIV 624
           S+I G+ PA + +L +YI++  + KL + V
Sbjct: 616 SRISGVNPADIAILSVYIQQGKIAKLKKSV 645


>gi|238020151|ref|ZP_04600577.1| hypothetical protein GCWU000324_00022 [Kingella oralis ATCC 51147]
 gi|237868545|gb|EEP69549.1| hypothetical protein GCWU000324_00022 [Kingella oralis ATCC 51147]
          Length = 631

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/620 (46%), Positives = 388/620 (62%), Gaps = 8/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVI++GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIIVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQPNLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +S +    N + +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDILLDGERVSGVKTAMNVVFKARAVVLTAGTFLAGKIHIGLENYSGGRAGDPAAQSLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
                     GRLKTGTP R+DG+TI +   E+Q  D  +   S   +  +  RQ+ C I
Sbjct: 188 GCLKGLQLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDTPIPVMSVRGNAAMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNLKTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTING 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     + +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQEPLILRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G IG+ + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGRKIGLIGDAQWRAFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERL 536
            T + L  +    +  ++  +    ++ L  P+     L ++ PDAR        V E++
Sbjct: 488 YTPQKLPESEQMRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDARPSETLPENVAEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P + DY+ +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQQEEINSRRDIETLRLPAEIDYAKVKGLSAEVQQKLNAHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL++++K+ 
Sbjct: 607 RISGVTPAAVALLMVHLKRG 626


>gi|313889485|ref|ZP_07823131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122097|gb|EFR45190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 633

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+G GHAG EA+   A++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVVGAGHAGVEASLATARMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  + +QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKHTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G LK  +G      S +
Sbjct: 125 SMIDDILVEDGQVVGVLTATGQKFSAKAVVVTTGTALRGEIILGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I + +TE Q  D++   FSFM+  +     Q+ 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYSETEIQPGDDKPNHFSFMSKDEDYLKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQNSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RHTEEVYVQGLSTSLPEDVQKELLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G +   R   F    +++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDNERWSAFEAKKKQFEKELRRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+       S    A     + VIE 
Sbjct: 485 SIKLKPIRETNEKVEALGFKPLTDAMTAKEFMRRPEIDYATAISFIGSADENLDTKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++YI+ N
Sbjct: 605 SRISGVNPADISILMVYIEGN 625


>gi|170756087|ref|YP_001783277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B1 str. Okra]
 gi|205831524|sp|B1IHR8|MNMG_CLOBK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169121299|gb|ACA45135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B1 str. Okra]
          Length = 625

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 388/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T 
Sbjct: 187 SLLNLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKDRE 624


>gi|254670417|emb|CBA05990.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha153]
          Length = 642

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 381/619 (61%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S       +   + C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGSAEMHPHQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         ++ V+E+++
Sbjct: 499 YTPQKLAEDEQIRVFGQKLNREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|332184275|gb|AEE26529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella cf. novicida 3523]
          Length = 627

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/621 (48%), Positives = 401/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + SYDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYDYSYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   I +QENLD+ 
Sbjct: 62  EIDAMGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLINNQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +  ++ +     R   VVLT GTFL G IHIGK+    GR GD PSN
Sbjct: 122 QDSVDDLVVENNTVCGVITKTGITFRAKKVVLTVGTFLGGKIHIGKVSNAGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
           +L        F   RLKTGTP R+D +++ +   E Q  D     FSF +       +QI
Sbjct: 182 ALAARLRSLPFRVDRLKTGTPPRIDRRSVDFSVMEVQHGDSPTPYFSFFSKGKVEHPQQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN ETH+II +N+  SA+YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPE
Sbjct: 242 PCYITYTNHETHKIITDNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFADKERHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q  +IR+I G E   I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCNYIRSIKGFENAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQINGTTGYEEA AQGLVAGIN+A   +       +R DSYIGV+IDDL +K
Sbjct: 362 HIKNLYFAGQINGTTGYEEAGAQGLVAGINAAISLDSDKSWYPTRADSYIGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + +  Q+ F       N   +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLNKEDQQLFINKKSAINENITMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+     L  I           VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPEIDYSKLQQIPELNLNLQDEAVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  +  +    E++ IP DF+YS +  LSNE+ +KL+  KP  L +
Sbjct: 542 QIEISAKYSGYIERQNKDIAKSATLEQKTIPTDFNYSQVKGLSNEVLQKLTEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGITPAAISLLTIYMKK 622


>gi|317165423|gb|ADV08964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 655

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
              + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 512 YAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 632 ISGVTPAAVALLMVHLKRG 650


>gi|17231053|ref|NP_487601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nostoc sp. PCC 7120]
 gi|21263666|sp|Q8YR87|MNMG_NOSS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|17132694|dbj|BAB75260.1| glucose inhibited division protein A [Nostoc sp. PCC 7120]
          Length = 640

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/626 (41%), Positives = 377/626 (60%), Gaps = 5/626 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDAFDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAIMKNIVENQENLSIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V        + +  +        +C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 129 SMVTDLVLGANDEVIGVETYFGVAFQCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K + Q  D  +  FSF  D  +   Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSKMQLQPGDAEVRWFSFDPDVWVEREQLP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHMTRTTPETHRLIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFVDKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 369 IAGLFCAGQVNGTTGYEEAAAQGIVAGINAARFVRDEEMIVFPREHSYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +  ++    +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWQMFTRKQEQITGEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +I+         + T  + L  P F   +L        + +    E  
Sbjct: 489 ATRVKENDDVGKAIASNTQQAIKGSITLADLLRRPGFHYVDLDRYGLGNPELTPAEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  + +R +P D DY+++  LS E +EKL+ +KP  + QA+
Sbjct: 549 EIDIKYSGYLARQQSQIEQIARQAQRQLPGDLDYTTVDTLSKEAREKLNKVKPLTIGQAA 608

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNE 622
           +I G+ PA +N LLIY++    K  +
Sbjct: 609 RIGGVNPADINALLIYLELRQSKHQK 634


>gi|257888104|ref|ZP_05667757.1| glucose-inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257824158|gb|EEV51090.1| glucose-inhibited division protein A [Enterococcus faecium
           1,141,733]
          Length = 633

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 376/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTQMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  I   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGICHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +  +L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQAFLATINAAPLKDGVLASDFLRRPEITYADLLRFIPENEELTPKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|260549419|ref|ZP_05823638.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter sp. RUH2624]
 gi|260407528|gb|EEX01002.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter sp. RUH2624]
          Length = 626

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/619 (47%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|153939143|ref|YP_001392998.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. Langeland]
 gi|166222927|sp|A7GJN8|MNMG_CLOBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152935039|gb|ABS40537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. Langeland]
 gi|295320973|gb|ADG01351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. 230613]
          Length = 625

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/618 (42%), Positives = 388/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II +NI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHQNIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|325126644|gb|ADY85974.1| Glucose inhibited division protein A [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 631

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 361/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTISLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +  +     Q  
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTDQTS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPEG
Sbjct: 245 CWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK+
Sbjct: 305 RKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG
Sbjct: 365 IKHLYTAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R   F    +        L 
Sbjct: 425 TEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLAKKELIQEDLDRLG 484

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +          A  FL  P  +++++  +          V E++
Sbjct: 485 EITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYVKEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EKL+ ++P  L QA 
Sbjct: 545 EIYIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKLAKIRPETLAQAE 604

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA L +L +Y++   
Sbjct: 605 RISGVNPADLAILSVYVQNGK 625


>gi|316985720|gb|EFV64666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria meningitidis H44/76]
          Length = 648

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 384/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 25  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 84

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 85  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 144

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 145 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 204

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   +  +  RQ+ C I
Sbjct: 205 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNADMHPRQVSCWI 264

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 265 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 324

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 325 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 384

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KGV E
Sbjct: 385 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNE 444

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 445 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTW 504

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 505 YTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 564

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 565 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 624

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 625 ISGVTPAAVALLMVHLKRG 643


>gi|325135119|gb|EGC57746.1| glucose-inhibited division protein A [Neisseria meningitidis
           M13399]
          Length = 628

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLEHYEGGRAGDPAAKSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 185 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVSEAQWRMFNEKREAVEREIQRLKTTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         S+ VIE+++
Sbjct: 485 YTPQKLAEGEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|118582020|ref|YP_903270.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Pelobacter propionicus DSM 2379]
 gi|205375703|sp|A1AV42|MNMG_PELPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118504730|gb|ABL01213.1| glucose inhibited division protein A [Pelobacter propionicus DSM
           2379]
          Length = 628

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 401/619 (64%), Gaps = 3/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVIV+G GHAGCEAA  AA++G  T L+T     I  MSCNP+IGGL KGHLV+E
Sbjct: 4   YDFEYDVIVVGAGHAGCEAALAAARMGCRTLLLTINLDAIALMSCNPSIGGLAKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  DA GIQFR+LN +KGPAVR  R QAD++LYRL M+R + +Q+NL + Q
Sbjct: 64  IDALGGEMARNIDATGIQFRILNTRKGPAVRASRAQADKQLYRLRMKRVLENQDNLHLKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     + +++  +  +        TVVLTTGTF+RG+IHIG      GR GD PS  
Sbjct: 124 GEVTALYCDGSVVRGVDTRSGIRFLGKTVVLTTGTFMRGLIHIGLTHYEGGRAGDLPSIG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   +     GRLKTGTPARLDG+TI + + E Q  D    PFSF T++IT RQ+ C 
Sbjct: 184 LSDQLKQLGLQVGRLKTGTPARLDGRTIDFSRLEPQHGDNPPQPFSFSTERITMRQVPCH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF +++ HQ F+EPEGL+
Sbjct: 244 IAYTNERSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPDKDRHQAFIEPEGLD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +YP+G+ST+LP +IQ  F R++ GLE+V I+RP Y IEYDY++P +L  +LETK I+
Sbjct: 304 TVEMYPSGMSTSLPIDIQIAFYRSMEGLERVEIMRPAYGIEYDYVDPIQLHTSLETKAIT 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAA QG+VAGIN+A ++   + +  SR++SYIGVMIDDL + G  
Sbjct: 364 NLYHAGQINGTSGYEEAAGQGIVAGINAALRTRGEEPLILSRSESYIGVMIDDLITLGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL  IG ++G + +   + + +        R  L + 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADQRLREIGYRVGLVSDAEYEGYLRKRDMIQAERERLAAT 483

Query: 482 VLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            ++         + +      K  +  + L  P+ +  +L S    +R+  S+V E+++I
Sbjct: 484 RISMSQAEEEYFTARGLPDLQKGTSYEQLLRRPEITYDDLLSFDTVSRETPSVVREQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ + +     E   +P D DY+++  L+ E+KEKL+ ++P  L QAS+I
Sbjct: 544 QIKYQGYIERQLEQIRRSAKLENTPLPTDMDYAAINGLTTEVKEKLTKVRPDTLGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNT 617
            G+TPAA+++L I +K + 
Sbjct: 604 PGVTPAAVSVLSIALKAHA 622


>gi|257885580|ref|ZP_05665233.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,501]
 gi|257821436|gb|EEV48566.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,501]
          Length = 633

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 377/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGEKTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +  +L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQDFLATINAAPLKDGVLASDFLRRPEITYADLLRFIPENEELTRKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|322421974|ref|YP_004201197.1| glucose inhibited division protein A [Geobacter sp. M18]
 gi|320128361|gb|ADW15921.1| glucose inhibited division protein A [Geobacter sp. M18]
          Length = 624

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/617 (49%), Positives = 395/617 (64%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + ++ YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+
Sbjct: 3   VYDKKYDVIVVGAGHAGCEAALAAARIGCSTLMLTINLDAIALMSCNPAIGGLAKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  DA GIQFRVLN KKGPAVR  R QAD+++YRL M+  +  Q++LD+ 
Sbjct: 63  EIDALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQMYRLRMKHVMEQQDDLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV G   E   +  +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS 
Sbjct: 123 QVEVTGLYIEDGAVVGVDTKGGVRFLGKTVVLTTGTFMRGLIHIGLVNYPGGRAGDLPSI 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +    + FD GRLKTGTPARLDG+TI + + EKQ+ DE  IPFSF TD+I   Q+ C
Sbjct: 183 GLSDGLKDYGFDVGRLKTGTPARLDGRTIDFGRLEKQYGDEDPIPFSFSTDRIEQTQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN  +H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG 
Sbjct: 243 HIAYTNPRSHDIIRGGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGR 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +
Sbjct: 303 ETVEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAAAQGL+AGIN+A +    D +   R+++YIGVMIDDL + G 
Sbjct: 363 RNLYHAGQINGTSGYEEAAAQGLMAGINAALRVKGRDPLVLGRSEAYIGVMIDDLVTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G ++G + E   K F    +  +     L  
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLREKGHEVGLVPEALYKSFLAKKELIDSELERLCR 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             LT        +            +  + L  PDF+ ++L  + P+       V E+L+
Sbjct: 483 ERLTPSAAGEELLQEWDLVGIQNAISYEQLLRRPDFTCRDLSRVYPEIMALPEQVREQLE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+ + +     E   IP D DY ++  LS E++EKL+  +P  L QAS+
Sbjct: 543 IQIKYKGYIQRQLEQVERSARLETSKIPDDMDYGTISGLSTEVREKLARFRPDTLGQASR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA + +L I +K
Sbjct: 603 IPGVTPAGITILSIALK 619


>gi|329847387|ref|ZP_08262415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Asticcacaulis biprosthecum C19]
 gi|328842450|gb|EGF92019.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Asticcacaulis biprosthecum C19]
          Length = 622

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/620 (51%), Positives = 423/620 (68%), Gaps = 1/620 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  ++ +DVIV+GGGHAGCEAA  +A++GA T L+TH+  T+G MSCNPAIGGLGKGHLV
Sbjct: 1   MTEQTLWDVIVVGGGHAGCEAATASARMGAKTLLLTHRFDTLGEMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDALDG+MGR+AD AG+QF+VLN  KGPAVRGPR Q DR+LYR A+Q E+   ENL +
Sbjct: 61  REIDALDGIMGRMADVAGMQFKVLNRSKGPAVRGPRAQIDRKLYRQAVQAELSQTENLTI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+G V     +  I+   +       R   VVLTTGTFLRG+IHIG  + PAGR GD P+
Sbjct: 121 IEGAVEDLILDNGIVCGAIDAAGQNYRAKAVVLTTGTFLRGMIHIGDKRTPAGRWGDQPA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
           N L         D GRLKTGTPARL+GKTI WD+ E+Q  D  + PFS++T  I   QI 
Sbjct: 181 NGLGQRLYDLKLDMGRLKTGTPARLEGKTIHWDRLEQQLGDNPITPFSYLTPSIERDQIA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN ETHRII E ++ SA+Y G I   GPRYCPSIEDK+V+F ++  HQIFLEPEG
Sbjct: 241 CGITYTNAETHRIIAERLQESAVYGGHIAGRGPRYCPSIEDKVVKFADKTSHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            + D VYPNGIST++ E  Q  F+RTI GLE V + R  YAIEYDY++P+EL P+LE K+
Sbjct: 301 YDDDTVYPNGISTSVSETTQDAFLRTIVGLEDVVVKRYAYAIEYDYVDPRELNPSLELKR 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLFLAGQINGTTGYEEA AQGL+AG+N+A ++     +   R ++YIGVMIDDL ++G
Sbjct: 361 LPGLFLAGQINGTTGYEEAGAQGLMAGLNAAVRAGGQAPVVLGRDEAYIGVMIDDLITRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLT  G+ +G +G RRQ  + +       +R    
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTDKGVAIGVVGARRQTAWTEKRDALAGIRQRAA 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            L +  K   + +I    DG+ R   + ++Y   S + L ++ P+   +   + E+++I+
Sbjct: 481 ELNVGPKEALNQAIHVNGDGQRRNVMQLMAYDSCSREKLEALWPEISAWPDALYEQVEID 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y GRQ  E +  + +E   +P D DY ++  LS+E +EKL+ ++P  L QA +IE
Sbjct: 541 ALYAGYMGRQKAEIETFRKDENLALPADLDYMAIVGLSHEAREKLNRIRPQTLGQAGRIE 600

Query: 600 GMTPAALNLLLIYIKKNTVK 619
           G+T  AL  LL Y++ +  +
Sbjct: 601 GITQGALTTLLFYVRNHNKR 620


>gi|257899264|ref|ZP_05678917.1| glucose-inhibited division protein A [Enterococcus faecium Com15]
 gi|293572711|ref|ZP_06683675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E980]
 gi|257837176|gb|EEV62250.1| glucose-inhibited division protein A [Enterococcus faecium Com15]
 gi|291607203|gb|EFF36561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E980]
          Length = 633

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 376/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +  +L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQAFLATINAAPLKDGVLASDFLRRPEITYADLLRFIPENEELTRKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|313124783|ref|YP_004035042.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312281346|gb|ADQ62065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 631

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 362/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +  +     Q  
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRINRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTDQTS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPEG
Sbjct: 245 CWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ +Y    ST++PEE+Q + + T+ GLEK  ++RPGYAIEYD ++P +L  TLETK+
Sbjct: 305 RNTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKAEMMRPGYAIEYDVVDPWQLTHTLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG
Sbjct: 365 IKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R   F    +        L 
Sbjct: 425 TEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLAKKELIQEDLDRLA 484

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +          A  FL  P  +++++  +          V E++
Sbjct: 485 EITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPMVTVEDVERLTGQKLAGDRYVKEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EK + ++P  L QA 
Sbjct: 545 EIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKFAKIRPETLAQAE 604

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA L +L +YI+   
Sbjct: 605 RISGVNPADLAILSVYIQNGK 625


>gi|331268195|ref|YP_004394687.1| glucose inhibited division protein A [Clostridium botulinum
           BKT015925]
 gi|329124745|gb|AEB74690.1| glucose inhibited division protein A [Clostridium botulinum
           BKT015925]
          Length = 630

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/620 (42%), Positives = 387/620 (62%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV VIG GHAGCEAA  +A+LG +T +     +++  M+CNP IGG  KGHLVREIDA
Sbjct: 7   EFDVAVIGAGHAGCEAALASARLGINTIVFATDLASVAMMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  + + ENL + Q EV
Sbjct: 67  LGGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKKKYSERMKHVLETTENLQLKQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E   +  ++ ++ +  R    +L TG +L+  I IG +    G  G +P+N L  
Sbjct: 127 IEVDIENGKVKGVLTKNGAYYRVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ K++ + K  +Q  D+ ++PFSFM++ I   QI C +T 
Sbjct: 187 SLIDSGIKLTRFKTGTPARINRKSVDFSKMIEQKGDDDIVPFSFMSENIEREQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ 
Sbjct: 247 SGDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K+I GLF
Sbjct: 307 LYVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKEIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA  QGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQMNGSSGYEEAGCQGLIAGINAALKLKGEKPLILKRSDAYIGVLIDDLITKGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + + R  +F K   +       LKS+ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTEMGRKIGLVKDERYNKFTKRKNDIESEIERLKSIQIT 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +    +I+     K  + YE +  P+ +   +  +  +  K    V E++ I S 
Sbjct: 487 NKQEVNKFLENINSSALKKPISLYELIKRPELNYFVVEELDDNRPKLPRDVQEQVNIISK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E RLIPK+FDY+ +  L  E  +KL  +KP ++ QAS+I G+
Sbjct: 547 YEGYIQKQLEQVDQFKKLENRLIPKEFDYTEVKGLRKEAIQKLDKIKPVSIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           +PA +++LLI +++     +
Sbjct: 607 SPADISVLLIVLEQYNRNNS 626


>gi|55821969|ref|YP_140411.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus LMG 18311]
 gi|55823886|ref|YP_142327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus CNRZ1066]
 gi|55737954|gb|AAV61596.1| glucose inhibited division protein A [Streptococcus thermophilus
           LMG 18311]
 gi|55739871|gb|AAV63512.1| glucose inhibited division protein A [Streptococcus thermophilus
           CNRZ1066]
          Length = 667

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/630 (42%), Positives = 382/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 39  FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 98

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 99  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 158

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 159 SMVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVT 218

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 219 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 278

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 279 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 338

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK 
Sbjct: 339 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKL 398

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 399 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 458

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 459 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFKIKKNQFDRELTRLS 518

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 519 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 576

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  + 
Sbjct: 577 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPETIG 636

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 637 QASRISGVNPADISILMVYLEGNNKARRKV 666


>gi|322807966|emb|CBZ05541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum H04402 065]
          Length = 625

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 388/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  ++N+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEDNVILRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  DE+++PFSF+ +K+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDEKIVPFSFIHNKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIYENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLMLKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|168181109|ref|ZP_02615773.1| glucose-inhibited division protein A [Clostridium botulinum NCTC
           2916]
 gi|226951094|ref|YP_002806185.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668094|gb|EDT80073.1| glucose-inhibited division protein A [Clostridium botulinum NCTC
           2916]
 gi|226843485|gb|ACO86151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A2 str. Kyoto]
          Length = 625

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 388/618 (62%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  +A++G  T + T    +I  M+CNP IGG  KGHLVREIDA
Sbjct: 7   DFDVVVIGAGHAGCEAALASARMGCKTLICTMNLDSIALMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  +  +EN+ + Q EV
Sbjct: 67  LGGEMGINIDHTFIQSRMLNTSKGPAVHSLRAQADKKRYSERMKHLLEKEENVVLRQLEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E N +  ++ ++ +      ++L TGT+L+G I IG +   +G  G  P+N L  
Sbjct: 127 IEIDVEDNEVKGVLTKNGAYFTTKAIILCTGTYLKGKIIIGDIIYSSGPSGLYPANDLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR++ +++ + K  +Q  D++++PFSF+ +K+   QI C +T 
Sbjct: 187 SLLDLGINLRRFKTGTPARINKRSVDFSKMIEQPGDKKIVPFSFIDNKLDKDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETH+II ENI  S +Y+G I+  GPRYCPSIEDKIVRF +++ HQIF+EPEG NT+ 
Sbjct: 247 TSEETHKIIHENIHRSPLYNGSIEGVGPRYCPSIEDKIVRFPDKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +  R++PGLE   I+R  YAIEYD I+P++L  TLE K I+GL+
Sbjct: 307 LYVGGMSSSLPEDVQIKMYRSVPGLENAEILRTAYAIEYDCIDPQQLDLTLEFKNINGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+  K  + + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLIAGINAVLKIKEKNPLILKRSDAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R  +F    +        L+++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTELGYKVGLVKEDRYNKFLNRKKNVENEIERLRNMQIT 486

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   +  +  K   +  K  + YE +  P+     +  +       S    E + I + 
Sbjct: 487 GKREINEFLLEKGSTELKKPISLYELIKRPELDYFKVEPLDDKRPSLSDDEKEEINIIAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK  +Y  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYINKQLEQVEQFKKYEDRLIPKSINYLDIKGLRLEAIQKLEKIKPINIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +++LLIY+++   +
Sbjct: 607 SPADISVLLIYMERKNRE 624


>gi|307243466|ref|ZP_07525622.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493190|gb|EFM65187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus stomatis DSM 17678]
          Length = 626

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 7/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A++G  T +IT     + +++CNP+IGG GKG LV+E+DA
Sbjct: 8   SYDVIVVGAGHAGCEAALASARMGMKTLMITLSLDAVAALACNPSIGGTGKGQLVKEVDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA  IQ R+LN  KGPAV   R Q D+ LY   M+  I +QENLD+I  EV
Sbjct: 68  LGGQMGLNIDATYIQSRILNTAKGPAVHSLRAQTDKNLYHRVMKETIENQENLDLIMDEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ +  +     +    +L TG +L+  I IG      G  G   +  L  
Sbjct: 128 EEILHEGKRVTGVATRLGCEYKSKATILATGVYLQSTIFIGHDTFKEGPNGLGYAKKLTY 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +   D  R KTGTPAR+   +I +   + Q  DE+++PFSFM + I   QI C +TR
Sbjct: 188 NLKELGLDMRRFKTGTPARVHKDSIDFSVMDPQPGDEKVVPFSFMNENIERDQITCYLTR 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   T ++I +NI  SA+YSG+I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL+T  
Sbjct: 248 TTPATKKLIEDNITRSAMYSGNIEGTGPRYCPSIEDKIVKFNDKETHQLFIEPEGLDTKE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+ P ++Q +  R+I GLE V ++RP YAIEYD INP +L   LE K +  LF
Sbjct: 308 MYIQGVSTSFPLDMQVKMYRSIKGLENVRLMRPAYAIEYDCINPTQLKQNLEIKGLENLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+ GIN+  K    + +   R+D YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQFNGTSGYEEAAAQGLIVGINAVLKIRGQEALILDRSDGYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R  RF K   + +     LK+  +T
Sbjct: 428 RMMTSRAEYRLYLRQDNADMRLTQKGYDIGLVSQERYDRFLKKKADVDAEIERLKNDRIT 487

Query: 485 SKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
            K     L    I    +G   + YEFL  P+ +   L  +     +  S  V ++  I 
Sbjct: 488 PKEINPILEERGIVGLNNG--LSLYEFLKRPEINYSLLEEVGKGSDKDLSDEVKDQAVIM 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +QM +  + +  EK+ +  D DY  +  L  E ++KL+ +KP ++ QAS+I 
Sbjct: 546 IKYEGYISKQMKQIDQFRKLEKKKLNPDLDYDEIDGLRIEARQKLNAIKPTSIGQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G++PA +++LLIY+++   K 
Sbjct: 606 GVSPADISVLLIYLEQVRRKK 626


>gi|148244241|ref|YP_001218935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Vesicomyosocius okutanii HA]
 gi|166224336|sp|A5CXV2|MNMG_VESOH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146326068|dbj|BAF61211.1| glucose inhibited division protein A GidA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 621

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/614 (47%), Positives = 400/614 (65%), Gaps = 2/614 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ Y VIVIGGGHAG EAA  +A++G ST LI+H   T+G MSCNPAIGG+GKGHLV+EI
Sbjct: 4   SKRYLVIVIGGGHAGTEAALASARMGVSTLLISHNIETLGQMSCNPAIGGIGKGHLVKEI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+M    D +GIQFR LN  KG AVR  R QADR LY+  ++  + +Q+NL + Q 
Sbjct: 64  DAMGGIMAHTIDKSGIQFRTLNASKGSAVRATRAQADRILYKSEIRYALENQDNLSLFQQ 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + + I  +V Q    +    V+LT+GTFL G+IHIG+     GR GD+PSN+L
Sbjct: 124 SVDDLIIKGDQIKGVVTQMGLALMADKVILTSGTFLGGIIHIGQRNFQGGRAGDAPSNAL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECG 241
                 +D    RLKTGTP RLDG+T+ +   + Q  D  L  FSF+   +   RQI C 
Sbjct: 184 SRKLRSYDLGVNRLKTGTPPRLDGRTLDYSLMQVQSGDIPLPTFSFIGVKEEHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I   +K S I++G+I+S GPRYCPSIEDK+VRF ER+ HQIF+EPEGL+
Sbjct: 244 ITHTNKRTHDLIRSGLKDSPIFTGNIESIGPRYCPSIEDKVVRFNERDSHQIFVEPEGLS 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VYPNG+ST+L  ++Q  FI +I G E   IIRPGYAIEYD+ +P+ L  TLE KKIS
Sbjct: 304 TNEVYPNGVSTSLSYKVQLDFINSIKGFENAQIIRPGYAIEYDFFDPRGLKQTLEVKKIS 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+A    + D     R +SYIGVM+DDL +KG  
Sbjct: 364 GLYFAGQINGTTGYEEAAAQGLLAGVNAACAILEKDAWLPKRDESYIGVMVDDLITKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP   +LG I E R + F          +  LK+ 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADERLTPKAKELGLISEARWQSFQVKYNAVEQEKKRLKNT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL-QIES 540
            + + +  + +I  +      + +E L  P    Q L  I       + + + R+ + + 
Sbjct: 484 WIQANDTQANTILNQNISHEYSLFELLKRPKVDYQILSKIESGKPFLTDITLMRVIENQI 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ++E ++ +  E  ++  + +Y+S+ ALS E+++KL + KP  + QAS+I+G
Sbjct: 544 KYAGYIKRQLVEIEKYRKNENTVLSTNINYNSIKALSTEVRQKLELHKPETIGQASRIQG 603

Query: 601 MTPAALNLLLIYIK 614
           +TPA++++LL+Y+K
Sbjct: 604 VTPASISILLVYLK 617


>gi|205831496|sp|A3M6R5|MNMG_ACIBT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193077747|gb|ABO12609.2| glucose-inhibited division protein A [Acinetobacter baumannii ATCC
           17978]
          Length = 626

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFSQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|332523577|ref|ZP_08399829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314841|gb|EGJ27826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 633

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 372/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+  AA++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLAAARMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ + +QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKQTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDDILVEDGKVVGVLTATGQKFSARAVVVTTGTALRGEIILGELKYSSGPNNSLASIT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I + +TE Q  D     FSFM+  +     QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYSQTEIQPGDHNPNHFSFMSKDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNKNSHDIINKNLYRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R   F    +++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTELGRQIGLVDDERWSIFETKKKQFEKELRRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+       S    A     + VIE 
Sbjct: 485 SIKLKPIRETNEKVEALGFKPLTDAMTAKEFMRRPEIDYATAISFIGSADENLDTKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++YI+ N
Sbjct: 605 SRISGVNPADISILMVYIEGN 625


>gi|239624143|ref|ZP_04667174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520529|gb|EEQ60395.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 625

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 376/622 (60%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+IV+G GHAGCEAA   A+LG  T + T    +I  M CNP +GG  KGHLVRE
Sbjct: 4   LEETYDMIVVGAGHAGCEAALAGARLGLETIMFTVSVDSIALMPCNPNVGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+R + + ++L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQDYSRQMRRTLENTDHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    ++  I  +     ++ R   V+L TGT+L+     G +  P G  G   +N 
Sbjct: 124 AEVSELVVQEGEIRGVKTFSGAVYRGKCVILCTGTYLKARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+Q  DE ++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKANGIEMFRFKTGTPARVDKRSIDFTKMEEQLGDEHVVPFSFSTDPESVQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEGTHDIIRRNLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+PGLEKV I+R  YAIEYD IN  +L PTLE KK
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQYAMYRTVPGLEKVKIVRNAYAIEYDCINSLQLKPTLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N+A K    D +   R+ +YIGV+IDDL +K 
Sbjct: 364 ISGLFAGGQFNGSSGYEEAAVQGFMAGVNAAMKIMGRDQVVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + +   ++    + E       L+
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADIRLRKIGHEIGLVSDGEYEKLLIKMDEIEHEIKRLQ 483

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             V+   +++   +            T  E +  P+   + L+ +     + S  V E++
Sbjct: 484 GTVIGVNSMAQEFLEKYGSTPLKSGVTLAELVKRPELDYEKLWELDERRPELSPEVREQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            IE  Y  Y  RQ  + ++ K  E +L+P+DFDY+ + +L  E  +KL+ ++P  + QAS
Sbjct: 544 NIEIKYEGYIKRQYQQVEQYKKLEGKLLPEDFDYTQVKSLRREAVQKLNKVQPATIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G++PA +++LL++  +   
Sbjct: 604 RISGVSPADISVLLVHFARKQQ 625


>gi|268593830|ref|ZP_06127997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae 35/02]
 gi|268683301|ref|ZP_06150163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-92-679]
 gi|268547219|gb|EEZ42637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Neisseria gonorrhoeae 35/02]
 gi|268623585|gb|EEZ55985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-92-679]
          Length = 631

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
              + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|113869584|ref|YP_728073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ralstonia eutropha H16]
 gi|123133494|sp|Q0K5L6|MNMG_RALEH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113528360|emb|CAJ94705.1| NAD/FAD-utilizing enzyme apparently involved incell division
           [Ralstonia eutropha H16]
          Length = 652

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 386/633 (60%), Gaps = 15/633 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPKEFDVIVVGGGHAGTEAALAAARMGCQTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ G M    D +GIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + 
Sbjct: 62  EVDAMGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRVLYRKAIRTRLENQPNLMLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   + Q     R   VVLT GTFL G IH+G      GR GD  + 
Sbjct: 122 QQAVDDLMVEGDRVVGAMTQVGIAFRARAVVLTAGTFLDGKIHVGLDNYTGGRAGDPAAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-I 238
           SL           GRLKTGTP R+DG+TI +   E+Q  D   +P FSF+     + Q +
Sbjct: 182 SLSARLKDLKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDPVPVFSFLGRPEQHPQQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF  +  HQIFLEPE
Sbjct: 242 PCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFATKESHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+  YPNGIST+LP ++Q + + +I G+E  +I+RPGYAIEYDY +P+ L  +LE+K
Sbjct: 302 GLTTNEFYPNGISTSLPFDVQLELVHSIRGMENAHILRPGYAIEYDYFDPRGLKASLESK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ISGLF AGQINGTTGYEEAAAQGL+AGIN+     + D     R  +Y+GV++DDL ++
Sbjct: 362 AISGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTPRRDQAYLGVLVDDLITR 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+SLR DNAD RLT +G +LG + + R   F +     +     L
Sbjct: 422 GVTEPYRMFTSRAEFRLSLREDNADMRLTEVGRELGVVDDARWDAFNRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPD-----A 525
           KS  +    L    +  +  K   +  +  + L  P+   + L ++      P+      
Sbjct: 482 KSTWVNPAMLPGEDAVPLLGKPIEREYSLADLLRRPEVRYEALMALQGGRHAPETPLDAE 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              +  + E+++I   Y  Y  RQ  E  +++  E   +P+  DY+ +  L  E+ +KL+
Sbjct: 542 PMLAEQIREQIEIGIKYHGYIARQAAEVDKLEANESTRLPEGLDYTEVRGLGFEVSQKLN 601

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  L QAS+I G+TPAA++LLL+++KK  +
Sbjct: 602 QHRPETLGQASRISGVTPAAISLLLVHLKKKGL 634


>gi|240851402|ref|YP_002972805.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
 gi|240268525|gb|ACS52113.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
          Length = 622

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/621 (55%), Positives = 445/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDV+++GGGHAGCEAA+ +A++GA TAL+THK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVVIVGGGHAGCEAASASARVGAKTALVTHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  QENL +I+ E
Sbjct: 62  ALDGLMGRAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKKAIQKLLKEQENLTLIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S ++++    I    VVLTTGTFL G IHIG     AGRMGD  S  L 
Sbjct: 122 VIDLVVKDNCVSGVILKKQGTILSGAVVLTTGTFLNGFIHIGDKTWAAGRMGDQSSVHLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD   KQ ADE  IPFS +T+KI   QIEC IT
Sbjct: 182 KRLKNYHIKLGRLKTGTPARLSKKTIAWDHLPKQQADENPIPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH+II +NI  SA+YSG+I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNERTHQIIRDNIYRSALYSGNIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LPE++Q   ++TI GLE   +++PGYAIEYD++NP++L  +LE + + GL
Sbjct: 302 TVYPNGLSTSLPEDVQISLLKTIEGLENAIVLQPGYAIEYDFVNPQQLTRSLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+A K  KLD I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAAHKVGKLDEILISRSTAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  K G + E R + + K  +  +  RS+ ++L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADTRLTPLAQKWGIVSEIRWECYQKKQERLDQARSICQNLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+FL+YP  +++ L    P  +   S   E L+IE+ YA
Sbjct: 482 TPNEASAHGLHVNHDGIRRSAYDFLAYPHMTLERLSDFWPQLQTIDSKTAESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q      ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLDKQAQNIASLQRDERLEIPSSLDIQAISGLSNELKSKIQEVSPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L++ YI++   +  +  
Sbjct: 602 AALSLIITYIQRQRREKAKTA 622


>gi|239997980|ref|ZP_04717904.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae 35/02]
 gi|240124724|ref|ZP_04737610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae SK-92-679]
          Length = 642

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
              + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 499 YAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|218247682|ref|YP_002373053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 8801]
 gi|257060981|ref|YP_003138869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 8802]
 gi|218168160|gb|ACK66897.1| glucose inhibited division protein A [Cyanothece sp. PCC 8801]
 gi|256591147|gb|ACV02034.1| glucose inhibited division protein A [Cyanothece sp. PCC 8802]
          Length = 631

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 372/623 (59%), Gaps = 5/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GHAGCEAA  +A+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 5   FQDQFDVIVVGAGHAGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +
Sbjct: 65  VDALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAIMKEIVENQDNLSIRE 124

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    KN  +  +     +      V+LTTGTFL G I IG   + AGR G+  S 
Sbjct: 125 AMATDLILGKNEEVIGVQTYFGTCFGAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFASV 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+ GRLKTGTPAR+D +++ +   E Q  D+ +  FSF  D  I   Q+ 
Sbjct: 185 GLSETLNRLGFEVGRLKTGTPARVDKRSVDYSNLETQPPDDEIRWFSFDPDAWIEREQMN 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 245 CYITRTTSQTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 305 REIPELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+ R   K + I F+R +SY+G +IDDL +K 
Sbjct: 365 IEGLFCAGQINGTTGYEEAAAQGIVAGINAVRFVKKQEMIIFAREESYLGTLIDDLCTKD 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F          +  L 
Sbjct: 425 LREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLFQDKQANIIAEKERLH 484

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +  K+  + +I   + ++   + T  + L  P F   +L        + +S+  E  
Sbjct: 485 ETRIKEKDEVAITIVNDTNQKIKGSITLADLLRRPQFHYIDLERYGLGNAQLNSVEKEGA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  +I  +  R +P+D +Y  +  LS E +EKL+ +KP  L QAS
Sbjct: 545 EIDIKYSGYLKRQQNQIDQISRQSNRQLPEDLNYMKIETLSMEAREKLNKIKPLTLGQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +N LL+Y++  + +
Sbjct: 605 RIGGVNPADINALLVYLELRSRQ 627


>gi|315612259|ref|ZP_07887173.1| glucose inhibited division protein A [Streptococcus sanguinis ATCC
           49296]
 gi|315315652|gb|EFU63690.1| glucose inhibited division protein A [Streptococcus sanguinis ATCC
           49296]
          Length = 637

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 377/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|152998468|ref|YP_001343303.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Marinomonas sp. MWYL1]
 gi|189039345|sp|A6W3T9|MNMG_MARMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|150839392|gb|ABR73368.1| glucose inhibited division protein A [Marinomonas sp. MWYL1]
          Length = 629

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/622 (46%), Positives = 391/622 (62%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+E
Sbjct: 3   FPSRFDVIVVGGGHAGTEAALAAARMGVKTLLLSHNIETLGQMSCNPAIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG M    D AGIQFR LN +KGPAVR  R QADR LY+ A++ ++ +QENL + Q
Sbjct: 63  IDALDGAMALATDQAGIQFRTLNSRKGPAVRATRAQADRILYKAAIRHKLENQENLWLFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E      ++ Q        TVVLT GTFL GVIHIG      GR GD PS  
Sbjct: 123 QSAEDLIVENGAARGVITQTGIRFNSKTVVLTAGTFLGGVIHIGLENHSGGRAGDPPSIG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIEC 240
           L        F   RLKTGTP R+D +++ + + + Q  D+     S+M ++ +  RQIEC
Sbjct: 183 LAQKLRALPFRVDRLKTGTPPRIDARSVDFSQMQAQPGDDIDPVMSYMGNRAMHPRQIEC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL
Sbjct: 243 FITHTNERTHDIIRAGMDRSPMYTGVIEGVGPRYCPSIEDKIVRFADKNSHQIFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP ++Q + +R++ G+E  +IIRPGYAIEYDY NP++L  +LETK +
Sbjct: 303 TTHELYPNGISTSLPFDVQIELVRSMKGMENAHIIRPGYAIEYDYFNPQDLKYSLETKHM 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEA AQGL+AG+N+A  + + D     R ++Y+GV++DDL S G 
Sbjct: 363 PGLFFAGQINGTTGYEEAGAQGLLAGLNAALLAQEKDAWTPRRDEAYLGVLVDDLISMGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        L+S
Sbjct: 423 KEPYRMFTSRAEYRLILREDNADMRLTEKGRELGLVSDERWAAFCKKREAIELETQRLRS 482

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERL 536
             +      + SI+ K         +  + L  P+    ++ ++           V E++
Sbjct: 483 SWIVPNTPEADSINPKLETPITHEYSLLDLLKRPNIVYSDIANLKNGLDEPVDEQVSEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           QI   YA Y  RQ  + + ++ +E   +P D DYS +  LSNE+K+KL+ L+P  L  AS
Sbjct: 543 QIAVKYAGYISRQAEDIERLRRQENTELPDDLDYSKMEGLSNEIKQKLTQLRPATLAAAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I+G+TPAA++LLLI++KK  +
Sbjct: 603 RIQGVTPAAVSLLLIHLKKRAI 624


>gi|114322027|ref|YP_743710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310595|sp|Q0A4L7|MNMG_ALHEH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114228421|gb|ABI58220.1| glucose inhibited division protein A [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 629

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/620 (47%), Positives = 397/620 (64%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNPAIGG+GKGHLVREID
Sbjct: 5   ERFDVIVVGGGHAGTEAAMAAARIGARTLLLTHSIETVGQMSCNPAIGGIGKGHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M R AD  GIQFR LN +KGPAVR  R QADR+LYR A++R + +Q  L + Q  
Sbjct: 65  ALGGIMARAADRGGIQFRTLNSRKGPAVRATRAQADRQLYRQAIRRAVENQPRLALFQQS 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   ++ +V       R   VVLT GTFL G IHIG+     GR GD  +N+L 
Sbjct: 125 VDDLIVEGGRVTGVVTGMGLRFRAPAVVLTVGTFLGGRIHIGESNYGGGRAGDPAANALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
               +  F   RLKTGTP RLDG+TI W +  +Q  D+    FSF+     +  Q+ C I
Sbjct: 185 ARLRELPFQVDRLKTGTPPRLDGRTIDWARLTEQPGDDPAPVFSFLGRPDEHPAQVPCHI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             T  ETH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+T
Sbjct: 245 AHTRPETHDIIRGALDRSPMYSGTIEGVGPRYCPSIEDKVVRFADKGSHQIFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q++ +R+IPGLE+  I+RPGYAIEYD+ +P+ L PTLET+ + G
Sbjct: 305 HEVYPNGISTSLPFDVQYELVRSIPGLEQARIVRPGYAIEYDFFDPRGLHPTLETRHLEG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG+N+A +    +     R  +Y+GV++DDL ++G  E
Sbjct: 365 LWFAGQINGTTGYEEAAAQGLLAGLNAALRVQGREPWYPRRDQAYLGVLVDDLITRGTRE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTPIG  LG + + R +RF    +     ++ L + +
Sbjct: 425 PYRMFTSRAEYRLMLREDNADLRLTPIGRDLGLVDDERWRRFNAKREALEREQARLAATL 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQI 538
           +   +L       +      K +   E L  PD    +L  +         + V+E+L+I
Sbjct: 485 IRPGDLPDALARQVLGGPLRKEQRLEELLRRPDVGYADLMRLPGAGDPVPDAEVVEQLEI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ YA Y  RQ  E    +  E+  +P+   Y  +  LS+E++EKL+  +P  + QA++I
Sbjct: 545 QARYAGYLERQHDEVARARRHEQLPLPEGLAYDRVAGLSSEVREKLAAHRPATVGQAARI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++LLL+++++  +
Sbjct: 605 PGVTPAAVSLLLVHLRRQGL 624


>gi|307710238|ref|ZP_07646681.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK564]
 gi|307619000|gb|EFN98133.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK564]
          Length = 637

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 374/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|268687460|ref|ZP_06154322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268627744|gb|EEZ60144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 631

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGKAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
              + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 488 YAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|118443722|ref|YP_876980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium novyi NT]
 gi|166222928|sp|A0PX78|MNMG_CLONN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118134178|gb|ABK61222.1| glucose-inhibited division protein A [Clostridium novyi NT]
          Length = 632

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/617 (42%), Positives = 385/617 (62%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV VIG GHAGCEAA  +A+LG ST +     +++  M CNP IGG  KGHLVREIDA
Sbjct: 7   EFDVAVIGAGHAGCEAALASARLGVSTVVFATDLASVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + +NL + Q E+
Sbjct: 67  LGGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKRKYAERMKHVLETTDNLHLKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E + +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  
Sbjct: 127 IKVDIEDSKVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTPAR++ +T+ + K  +Q  DE ++PFSFM++ I   QI C +T 
Sbjct: 187 SLIESGIKITRFKTGTPARINRRTVDFSKMIEQKGDENIVPFSFMSENIEREQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ 
Sbjct: 247 SGDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K I GLF
Sbjct: 307 MYVGGMSSSLPEDVQLKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKDIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA  QGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQMNGSSGYEEAGCQGLIAGINAALKLQGKEPLILKRSDAYIGVLIDDLVTKGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R +RF K           LK++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTEMGHKIGLVKEDRYERFTKRKTAIEDEIERLKNIQIT 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +     ++     K  + YE +  P+ +   +  +  D  +    V E++ I S 
Sbjct: 487 NKQEVNKFLEGLNSAGLKKPISLYELIKRPELNYFVVKDLDKDRAELPRDVQEQVNIISK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK+FDY  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYIQKQLEQVEQFKKLENRLIPKEFDYKLVKGLRTEAIQKLDKIKPVNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLI +++   
Sbjct: 607 SPADISVLLIVLEQYNR 623


>gi|240129081|ref|ZP_04741742.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria gonorrhoeae SK-93-1035]
          Length = 642

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R+QADR LY+ +++  + +QENLD+ Q  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRATRSQADRILYKASIREMLENQENLDLFQQA 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS ++    +  +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 139 VEDVTLEGERISGVITAMGAEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 198

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S   + ++  RQ+ C I
Sbjct: 199 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVRGNAEMHPRQVSCWI 258

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 259 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 318

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 319 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 378

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     D +   R  +Y+GV++DDL +KG+ E
Sbjct: 379 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRGQDPLLLRREQAYLGVLVDDLITKGLNE 438

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +G+ + + F +  +        LK+  
Sbjct: 439 PYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGKAQWRMFNEKREAVEREIQRLKTTW 498

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
              + L+      +  ++  +    ++ L  P+     L ++         S+ V+E+++
Sbjct: 499 YAPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAIPSERLSAEVVEQVE 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P   DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 559 IQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGRVKGLSAEVQQKLNQHKPETVGQASR 618

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 619 ISGVTPAAVALLMVHLKRG 637


>gi|239501427|ref|ZP_04660737.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB900]
          Length = 626

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|261206910|ref|ZP_05921599.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium TC 6]
 gi|289567291|ref|ZP_06447670.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium D344SRF]
 gi|293553540|ref|ZP_06674167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1039]
 gi|294616666|ref|ZP_06696437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
 gi|260078538|gb|EEW66240.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium TC 6]
 gi|289160910|gb|EFD08831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium D344SRF]
 gi|291590486|gb|EFF22224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
 gi|291602295|gb|EFF32520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1039]
          Length = 633

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 376/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +  +L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQDFLATINAAPLKDGVLASDFLRRPEITYADLLRFIPENEELTRKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|119947334|ref|YP_945014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Psychromonas ingrahamii 37]
 gi|166222724|sp|A1T100|MNMG_PSYIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119865938|gb|ABM05415.1| glucose inhibited division protein A [Psychromonas ingrahamii 37]
          Length = 629

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/625 (49%), Positives = 403/625 (64%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVIVIGGGHAG EAAA AA++G +T L+TH   T+G MSCNPAIGG+GKGHLVRE
Sbjct: 3   YHEHFDVIVIGGGHAGTEAAAAAARMGMNTLLLTHNIETLGQMSCNPAIGGIGKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLM   AD AGIQFR+LN  KGPAVR  R QADR LY+ A++ ++ +QENL + Q
Sbjct: 63  IDALGGLMANAADKAGIQFRILNGSKGPAVRATRAQADRLLYKAAIREKLENQENLKIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +S +V +        TVVLT GTFL G IH+G      GR GDS S  
Sbjct: 123 QEVEDLVVENDRVSGVVTKMGIKFSAKTVVLTVGTFLNGQIHVGLKNHSGGRAGDSASIG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L     +    TGRLKTGTPAR+D ++I +   E Q  D     FSF+ D+  + RQI C
Sbjct: 183 LAQRLRELPLRTGRLKTGTPARIDSRSIDFSALEVQHGDNPTPVFSFLGDRSEHPRQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II  N+  S +YSG I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL
Sbjct: 243 YITHTNEKTHDIIRRNLDRSPMYSGVIEGVGPRYCPSIEDKVMRFADKNSHQIFVEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +YPNGIST+LP ++Q  FIR++ G E   + RPGYAIEYDY +P++L  TLE+K I
Sbjct: 303 TTNEIYPNGISTSLPFDVQIDFIRSMKGFENAFVTRPGYAIEYDYFDPRDLKSTLESKYI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGL+AG+N+       +  C  R  +Y GV++DDL++ G 
Sbjct: 363 DGLFFAGQINGTTGYEEAAAQGLLAGMNAGLMVQDKEGWCPGRDQAYAGVLVDDLSTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R K F+   +        LK+
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADTRLTEKGRELGLVDDIRWKAFSMKQESVETEIQRLKN 482

Query: 481 LVLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERL 536
             +  K+ +++ I+        +  T    +  P+ + Q+L SI        +    E++
Sbjct: 483 QWIHPKSENASQINALLKTPMQRESTLEGMIRRPEVNYQSLISIEGLGPVLENVQAAEQV 542

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  RQ  E +++K  E  L+P   DYS +  LSNE+  KL+  KP N+ QAS
Sbjct: 543 EIIIKYQGYVDRQREEIEKLKRNEDTLLPIHLDYSDIKGLSNEVTAKLNDTKPENIGQAS 602

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G+TPAA+++LLIYIKKN ++  
Sbjct: 603 RISGITPAAISILLIYIKKNALRRK 627


>gi|15900062|ref|NP_344666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae TIGR4]
 gi|111656984|ref|ZP_01407792.1| hypothetical protein SpneT_02001786 [Streptococcus pneumoniae
           TIGR4]
 gi|148983524|ref|ZP_01816843.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP3-BS71]
 gi|148996544|ref|ZP_01824262.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP11-BS70]
 gi|149001778|ref|ZP_01826751.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS69]
 gi|168576443|ref|ZP_02722326.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae MLV-016]
 gi|225855908|ref|YP_002737419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae P1031]
 gi|225860168|ref|YP_002741677.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649788|ref|ZP_04524040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821486|ref|ZP_04597331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229172|ref|ZP_06962853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255777|ref|ZP_06979363.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501930|ref|YP_003723870.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307066806|ref|YP_003875772.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus pneumoniae AP200]
 gi|21263676|sp|Q97T36|MNMG_STRPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14971587|gb|AAK74306.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TIGR4]
 gi|147757119|gb|EDK64158.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP11-BS70]
 gi|147760236|gb|EDK67225.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS69]
 gi|147923671|gb|EDK74783.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP3-BS71]
 gi|183577875|gb|EDT98403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae MLV-016]
 gi|225725047|gb|ACO20899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae P1031]
 gi|225727100|gb|ACO22951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237525|gb|ADI68656.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793413|emb|CBW35780.1| glucose inhibited division protein A [Streptococcus pneumoniae
           INV104]
 gi|301799300|emb|CBW31826.1| glucose inhibited division protein A [Streptococcus pneumoniae
           OXC141]
 gi|306408343|gb|ADM83770.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus pneumoniae AP200]
 gi|327390541|gb|EGE88881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA04375]
          Length = 637

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|289422576|ref|ZP_06424419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus anaerobius 653-L]
 gi|289157148|gb|EFD05770.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptostreptococcus anaerobius 653-L]
          Length = 631

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/617 (41%), Positives = 368/617 (59%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD++V+G GHAGCEAA  +A++G  T +IT    +I ++ CNP+IGG GKG LV+E+DA
Sbjct: 9   NYDIVVVGAGHAGCEAALASARMGMKTLMITMSLDSIAALPCNPSIGGTGKGQLVKELDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R Q D+ LY   M+  I +Q+NLD++  EV
Sbjct: 69  LGGQMGLNIDETYIQSRMLNTAKGPAVHSLRAQTDKNLYHRVMKETIENQDNLDLVMDEV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  +V +  ++ R    +L TG +L+  I +G      G  G + +  L +
Sbjct: 129 EEILHEEKKVLGVVTRLGNIYRSKMTILCTGVYLKSKIFVGHDTFDEGPNGLNYAKKLTD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++   D  R KTGTPAR+   +I +   E Q  DE++ PFSFM + I   QI C +TR
Sbjct: 189 SLVELGLDMRRFKTGTPARVHRDSIDFSVMEPQLGDEKVTPFSFMNEDIEKDQITCYLTR 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET ++I ENI  SA+YSG+I+  GPRYCPSIEDKIV+F ++  HQ+F+EPEGL+T  
Sbjct: 249 TTPETKQLIQENIHRSAMYSGNIEGTGPRYCPSIEDKIVKFSDKQTHQLFIEPEGLDTKE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+ P EIQ +  RTI GLE   I+RP YAIEYD I+P +L   LE K +  LF
Sbjct: 309 MYIQGVSTSFPMEIQTKMYRTIKGLENARIMRPAYAIEYDCIDPTKLKQNLEIKGVENLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQG++AGIN+  K    +     R+++YIGV+IDDL +KG  EPY
Sbjct: 369 SAGQFNGTSGYEEAAAQGIIAGINAVLKIRGEEPFILDRSEAYIGVLIDDLVTKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + + R  R+     +       L+   +T
Sbjct: 429 RMMTSRAEYRLYLRQDNADARLTQKGYDIGLVTQERYDRYQAKKAKIEAEIDRLRRDRVT 488

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIESS 541
               ++      +       + YEFL  P+     L  +        S  V ++  I   
Sbjct: 489 PNEANAYLEERGYALLNNGISLYEFLKRPEIDYSVLEDLGKASDLDLSDEVKDQAVIVIK 548

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  + +  E + + +D +Y  +  L  E ++KL+ +KP ++ QAS+I G+
Sbjct: 549 YEGYIDKQMKQIDQFRKLENKKLREDMNYDEIEGLRLEARQKLNDIKPSSIGQASRISGV 608

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLIY+++   
Sbjct: 609 SPADISVLLIYLEQKRR 625


>gi|184158704|ref|YP_001847043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ACICU]
 gi|260554556|ref|ZP_05826777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 19606]
 gi|332873697|ref|ZP_08441640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6014059]
 gi|238690971|sp|B2HUB2|MNMG_ACIBC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|183210298|gb|ACC57696.1| putative NAD/FAD-utilizing enzyme [Acinetobacter baumannii ACICU]
 gi|260411098|gb|EEX04395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 19606]
 gi|322507485|gb|ADX02939.1| gidA [Acinetobacter baumannii 1656-2]
 gi|323518618|gb|ADX92999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332738085|gb|EGJ68969.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6014059]
          Length = 626

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|116628660|ref|YP_821279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus thermophilus LMD-9]
 gi|122266746|sp|Q03I89|MNMG_STRTD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116101937|gb|ABJ67083.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Streptococcus thermophilus LMD-9]
          Length = 633

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/630 (42%), Positives = 382/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVECQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 125 SMVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFKIKKNQFDRELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|217968661|ref|YP_002353895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thauera sp. MZ1T]
 gi|217505988|gb|ACK52999.1| glucose inhibited division protein A [Thauera sp. MZ1T]
          Length = 652

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/627 (46%), Positives = 400/627 (63%), Gaps = 6/627 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA+T L+TH   T+G+MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAATLLLTHNIETLGAMSCNPSIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M    D  GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + Q  V 
Sbjct: 67  GGAMAAATDEGGIQFRILNASKGPAVRATRAQADRVLYKAAIRRRLENQPNLWLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++ +V Q        TVVLT GTFL G++H+G     AGR GD P+ SL   
Sbjct: 127 DLTVVGDRVTGVVTQIGLCFEAPTVVLTAGTFLNGLVHVGMQNYSAGRAGDPPAISLGAR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             +     GRLKTGTP RLD +TI +     Q  D+ +  FSF+     + RQ+ C +T+
Sbjct: 187 LKELALPQGRLKTGTPPRLDARTIDFSVMTVQPGDDPVPVFSFLGHASQHPRQLPCWMTQ 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I  N+  S +YSG I+  GPRYCPSIEDKI RF +++ H IFLEPEGL T  
Sbjct: 247 TNERTHDVIRANLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKDSHNIFLEPEGLETHE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R+I GLE  +I+RPGYAIEYDY +P+ L  +LETK I GLF
Sbjct: 307 IYPNGISTSLPFDVQLQIVRSIRGLENAHILRPGYAIEYDYFDPRNLKSSLETKSIGGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG N+A +    +  C  R ++Y+GV++DDL ++GV EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLLAGANAALQVQGREPWCPRRDEAYLGVLVDDLITRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G +LG + + R   F    +      + LK+    
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTGKGRELGLVDDVRWAAFCAKREAIERGTAQLKAAWAR 486

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIE 539
            + + +     +  K   + +  +E L  P+ S  +L S+   PD R+  + VIE+++I 
Sbjct: 487 PEAIPAEDQQRVLGKALEREQRYFELLRRPETSYASLMSLPGAPDERETDAQVIEQIEIA 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E  +    E   +P   DY+ +  LS E+++KL+  KP  + QA +I+
Sbjct: 547 AKYQGYIDRQQDEVTKQMQAEATRLPVGLDYAQVRGLSKEVQQKLNQHKPETIGQAGRIQ 606

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVLV 626
           G+TPAA++LLL+++K+  +      + 
Sbjct: 607 GVTPAAISLLLVWLKRRDLAARAGAVA 633


>gi|254459541|ref|ZP_05072957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium HTCC2083]
 gi|206676130|gb|EDZ40617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 619

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/603 (54%), Positives = 438/603 (72%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++DV+VIGGGHAGC+AA  +A++G+STAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKQLNFDVVVIGGGHAGCDAAHASARMGSSTALVTLSKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA DG+M RVAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M +EI +QENL ++
Sbjct: 61  EIDAFDGVMARVADKAGIQFRLLNRRKGPAVQGPRAQSDRSIYRGEMLKEIETQENLKIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE   F  E   +  + + D + + CS VVLTTGTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 EGEAVDFLMEGARVVGVALDDGTQLLCSAVVLTTGTFLRGVIHIGDVSKPGGRMGDKPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI WD  E Q  DE  + FSFM+  +T++Q+ C
Sbjct: 181 KLAERIDSFRLPFGRLKTGTPPRLDGRTINWDILESQPGDEDPVLFSFMSKGVTSQQVNC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN+ TH +I EN+K SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPEG+
Sbjct: 241 GITHTNMRTHVLIEENLKKSAMYGGHIDGIGPRYCPSIEDKIVRFADKTSHQVFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   VYPNGIST+LPE++Q+ +++TI GLE   I++PGYAIEYDY++P+ L   L  K +
Sbjct: 301 NDHTVYPNGISTSLPEDVQNAYVQTILGLEDAKILQPGYAIEYDYVDPRALDARLSVKGV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAAAQGLVAG+N+A +    D + FSRT+SYIGVMIDDLT++GV
Sbjct: 361 EGLFFAGQINGTTGYEEAAAQGLVAGLNAALEIQGRDPVIFSRTNSYIGVMIDDLTTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G++LGC+G +R+  F +   +   + S LK+
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTPLGIELGCVGYKRRLAFEEKKLQIASVVSALKA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            +LT K +++  IS  QDG  R   + L++PD   +++  + P+  +   ++ E+++ ++
Sbjct: 481 KLLTPKEINAGGISVNQDGNRRDGIQVLAFPDVKFEDVLDLFPELTETPRVIREQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +   +K +E + IPK FDY+++ +LSNELK+KL  ++P NL QA +++G
Sbjct: 541 LYSNYIARQQKDVDALKRDEAQNIPKGFDYTTIDSLSNELKQKLGQVQPMNLAQAGRVDG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|225858000|ref|YP_002739510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 70585]
 gi|225720746|gb|ACO16600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 70585]
          Length = 637

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 374/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|300811990|ref|ZP_07092446.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497016|gb|EFK32082.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|325685112|gb|EGD27243.1| glucose inhibited division protein A [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 631

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 362/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIV+G GHAGCEAA  +A++G  T L+T     +  M CNP++GG  KG +VRE
Sbjct: 5   VSNEYDVIVVGAGHAGCEAALASARMGEKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I +  NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKWDYHEEMKRTIENTPNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E      +V    +  R  +VVLTTGT  RG I IG+L   +G     P+  
Sbjct: 125 AVVDDLIVEDGECRGVVTNTGARYRAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIK 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S  +  F   R KTGTP R++  TI + KTE++  D+    FSF +  +     Q  
Sbjct: 185 LSESLERLGFKLRRFKTGTPPRVNRHTIDYSKTEEEPGDKEPRHFSFTSRDEDYLTDQTS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SGDI   GPRYCPSIE K+VRF +++ HQIFLEPEG
Sbjct: 245 CWMTYTNPKTHEIINENLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKDRHQIFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ +Y    ST++PEE+Q + + T+ GLEKV ++RPGYAIEYD ++P +L  TLETK+
Sbjct: 305 RKTEEIYVGDFSTSMPEEVQLEMLHTVAGLEKVEMMRPGYAIEYDVVDPWQLTHTLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L++AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG
Sbjct: 365 IKHLYMAGQMNGTSGYEEAAGQGLIAGINAALSAEGKPAFTLGRDEAYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R   F    +        L 
Sbjct: 425 TEEPYRLLTSRAEYRLLLRHDNADLRLTEKGHDLGLIDDDRYAEFLVKKELIQEDLDRLH 484

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +          A  FL  P  +++++  +          V E++
Sbjct: 485 EITVHPTIAVNEYLAGLGQTDLNGGVKADVFLRRPRVTVEDVERLTGQKLAGDRYVKEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  +Q I+   ++ +E + IPKD DY  +  L+ E +EK + ++P  L QA 
Sbjct: 545 EIDIKYAGYIKKQEIQVARLRRQEAKKIPKDIDYDQIEGLATEAREKFAKIRPETLAQAE 604

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA L +L +YI+   
Sbjct: 605 RISGVNPADLAILSVYIQNGK 625


>gi|75909745|ref|YP_324041.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Anabaena variabilis ATCC 29413]
 gi|123608727|sp|Q3M790|MNMG_ANAVT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|75703470|gb|ABA23146.1| Glucose-inhibited division protein A subfamily [Anabaena variabilis
           ATCC 29413]
          Length = 640

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 378/623 (60%), Gaps = 5/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDAFDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAIMKNIVENQENLSIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V        + +  +        +C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 129 SMVTDLVLGANDEVIGVETYFGVAFQCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K + Q  DE +  FSF  D  +   Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSKMQLQPGDEEVRWFSFDPDVWVEREQLP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHMTRTTPETHRLIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFVDKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 369 VAGLFCAGQVNGTTGYEEAAAQGIVAGINAARFVRDQEMIVFPREQSYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DN+D RLTP+G ++G I +RR + F +  ++    +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNSDQRLTPLGREIGLIDDRRWQLFTRKQEQITGEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +I+         + T  + L  P F   +L        + +    E  
Sbjct: 489 ATRVKENDEVGKAIASNTQQAIKGSITLADLLRRPGFHYVDLDRYGLGNPELTPAEREGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  + +R +P+D DY+++  LS E +EKL+ +KP  + QA+
Sbjct: 549 EIDIKYSGYLARQQSQIEQIARQAQRQLPRDLDYTTVETLSKEAREKLNKVKPMTIGQAA 608

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +N LLIY++    K
Sbjct: 609 RIGGVNPADINALLIYLELRQTK 631


>gi|167626321|ref|YP_001676821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189039342|sp|B0TY78|MNMG_FRAP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167596322|gb|ABZ86320.1| glucose inhibited division protein A [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 627

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/621 (48%), Positives = 405/621 (65%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N +YDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNNTYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   +  QENLD+ 
Sbjct: 62  EIDAMGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLLNDQENLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +  ++ +   + +   VVLT GTFL G IHIG++    GR GD PSN
Sbjct: 122 QDSVDDLVVENDTVCGVITKTGIIFKSKKVVLTVGTFLGGKIHIGQVSKEGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   + Q  D     FSF +       RQI
Sbjct: 182 ALAARLRALPFRVDRLKTGTPPRIDSRSVDFSVMDVQHGDTPTPYFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH II  N+  SA+YSG I+  GPRYCPSIEDK+VRF E++ HQIF+EPE
Sbjct: 242 PCYITYTNSKTHEIITNNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFAEKDRHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q ++IR+I G E   I+RPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCEYIRSIKGFENAFIMRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  LF AGQINGTTGYEEA AQGLVAGIN+A   +       +R++SY+GV+IDDL +K
Sbjct: 362 HIKNLFFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRSNSYMGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    +LG + ++ Q+ F       +   +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACELGLLNKQDQEIFINKKTAIDENIAIM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+   + L  I     K     VIE
Sbjct: 482 KNTWIGPQTQKARDLEKFLDKKMTRESTLFDLLKRPELDYKKLQQIPDTNLKLEDESVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  +  +I   E + IP+ FDYS +  LSNE+ +KLS  KP  L +
Sbjct: 542 QIEISAKYSGYIERQSKDIAKISTLESKTIPESFDYSQVKGLSNEVLQKLSEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGVTPAAVSLLTIYMKK 622


>gi|148992710|ref|ZP_01822353.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489389|ref|ZP_02713588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP195]
 gi|194397114|ref|YP_002036840.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae G54]
 gi|225853751|ref|YP_002735263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae JJA]
 gi|303255167|ref|ZP_07341243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS455]
 gi|303259177|ref|ZP_07345155.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP-BS293]
 gi|303260934|ref|ZP_07346883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263260|ref|ZP_07349183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS397]
 gi|303265425|ref|ZP_07351325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS457]
 gi|303269622|ref|ZP_07355381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS458]
 gi|307126355|ref|YP_003878386.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 670-6B]
 gi|147928436|gb|EDK79451.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572125|gb|EDT92653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP195]
 gi|194356781|gb|ACF55229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (glucose-inhibited division protein A) [Streptococcus
           pneumoniae G54]
 gi|225722589|gb|ACO18442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae JJA]
 gi|301801086|emb|CBW33754.1| glucose inhibited division protein A [Streptococcus pneumoniae
           INV200]
 gi|302597997|gb|EFL65067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS455]
 gi|302637771|gb|EFL68257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP14-BS292]
 gi|302639595|gb|EFL70052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae SP-BS293]
 gi|302640824|gb|EFL71212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS458]
 gi|302644865|gb|EFL75112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS457]
 gi|302647033|gb|EFL77257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae BS397]
 gi|306483417|gb|ADM90286.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae 670-6B]
 gi|332075802|gb|EGI86269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA17570]
 gi|332077434|gb|EGI87895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA41301]
          Length = 637

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|169633204|ref|YP_001706940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii SDF]
 gi|238688129|sp|B0VLL2|MNMG_ACIBS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169151996|emb|CAP00861.1| glucose-inhibited division protein A [Acinetobacter baumannii]
          Length = 626

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIREILENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|284007082|emb|CBA72357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           (glucose-inhibited division protein A) [Arsenophonus
           nasoniae]
          Length = 607

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/602 (45%), Positives = 375/602 (62%), Gaps = 5/602 (0%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81
             AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL G+M    D AGIQFR
Sbjct: 1   MAAARMGRQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEIDALGGIMAIATDKAGIQFR 60

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD 141
            LN  KGPAV+  R Q DR LY+ A++  + +Q NL + Q  V     E + I  ++ + 
Sbjct: 61  TLNASKGPAVQATRAQTDRVLYKQAIRTALENQNNLMIFQQAVEDLIVENDQIIGVITKM 120

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
                  +VVLT GTFL G IHIG      GR GD P+  L +   +      RLKTGTP
Sbjct: 121 GLKFHTKSVVLTVGTFLDGKIHIGLENYSGGRAGDPPAIGLSHRLRELPLRVDRLKTGTP 180

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHS 260
            R+D +TI + +   QF D+    FSF+     +  Q+ C IT TN +TH++I +N+  S
Sbjct: 181 PRIDARTIDFSQLVPQFGDDPTPIFSFIGSAEQHPKQLPCYITYTNEKTHQVIRDNLDRS 240

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
            +Y+G I+  GPRYCPSIEDK++RF +R+ HQIFLEPEGL ++ +YPNGIST+LP ++Q 
Sbjct: 241 PMYAGIIEGIGPRYCPSIEDKVMRFADRSAHQIFLEPEGLTSNEIYPNGISTSLPFDVQM 300

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           Q I ++ GLE   IIRPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEA A
Sbjct: 301 QIIHSMKGLENARIIRPGYAIEYDFFDPRDLKPTLESKFIKGLFFAGQINGTTGYEEAGA 360

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPD 440
           QGL+AG+N+AR + + +     R  +YIGV++DDL + G  EPYRMFTSRAEYR+ LR D
Sbjct: 361 QGLLAGLNAARYAFEQEGWFPRRDQAYIGVLVDDLCTLGTKEPYRMFTSRAEYRLMLRED 420

Query: 441 NADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSISFK-Q 497
           NAD RLT  G +LG I E R ++F + ++     R  L++L L      ++  +      
Sbjct: 421 NADLRLTEKGYELGLIDENRWQKFCRKVELIEQERQRLRNLWLHPNSDKINDLNQVLAVP 480

Query: 498 DGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEI 556
             K     + L  P+ S + L S+   +       V  +++I+  Y  Y  RQ  E +  
Sbjct: 481 LSKESNGEDLLRRPEMSYKLLTSLKYFSPAIDDPQVTNQVEIQVKYEGYIIRQQEEIERQ 540

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
              E   +P + DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK 
Sbjct: 541 LRNENTTLPTNLDYKQITGLSNEVIAKLNDHKPSSIGQASRISGITPAAISILLVWLKKQ 600

Query: 617 TV 618
            +
Sbjct: 601 GL 602


>gi|197120416|ref|YP_002140843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter bemidjiensis Bem]
 gi|197089776|gb|ACH41047.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-
           formylglycinetransferase/reductase [Geobacter
           bemidjiensis Bem]
          Length = 624

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/617 (48%), Positives = 395/617 (64%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +++YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+
Sbjct: 3   VYDKTYDVIVVGAGHAGCEAALAAARMGRSTLMLTINLDAIALMSCNPAIGGLAKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  DA GIQFRVLN KKGPAVR  R QAD++LYRL M+  +  Q+NLD+ 
Sbjct: 63  EIDALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQLYRLRMKHVMEQQDNLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E   ++ +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS 
Sbjct: 123 QVEVTDLYLEDGSVAGVDTKGGVRYLSRTVVLTTGTFMRGLIHIGLVHYPGGRAGDLPSI 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +      F+ GRLKTGTPARLDG+TI +++ E Q  DE  IPFSF T++I  +Q+ C
Sbjct: 183 GLSDGLKDVGFEVGRLKTGTPARLDGRTIDFERLEAQHGDENPIPFSFSTERIEQQQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN ++H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG 
Sbjct: 243 HIAYTNPKSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGR 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +
Sbjct: 303 ETVEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R+++YIGVMIDDL + G 
Sbjct: 363 RNLYNAGQINGTSGYEEAAAQGLMAGINAALRVQGKEPLVLGRSEAYIGVMIDDLVTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G  +G + E     F    +  +     L  
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLREKGHDIGLVPESLYHSFLAKKELIDSELDRLSR 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             LT        +            +  + L  PDF+  +L  I P+  +    V E+L+
Sbjct: 483 ERLTPSAAGEELLQEWDLVGIQNAISYEQLLRRPDFTCSDLSRIYPEIMELPETVREQLE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+ +       E   IP D DYS++P+LS E++EKL   +P  L QAS+
Sbjct: 543 IQIKYKGYIERQLEQVARAARLESTTIPADMDYSTVPSLSAEVREKLVRFRPDTLGQASR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA + +L I +K
Sbjct: 603 IPGVTPAGITILSIALK 619


>gi|313667505|ref|YP_004047789.1| glucose inhibited division protein A [Neisseria lactamica ST-640]
 gi|313004967|emb|CBN86395.1| glucose inhibited division protein A [Neisseria lactamica 020-06]
          Length = 655

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 32  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 91

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 92  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 151

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 152 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 211

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S     ++  RQ+ C I
Sbjct: 212 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPIMSVRGSAEMHPRQVSCWI 271

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 272 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 331

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 332 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 391

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 392 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 451

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 452 PYRMFTSRAEYRLQLREDNADMRLTEDGCKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 511

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         ++ VIE+++
Sbjct: 512 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIEQVE 571

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 572 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQASR 631

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 632 ISGVTPAAVALLMVHLKRG 650


>gi|114797761|ref|YP_762234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hyphomonas neptunium ATCC 15444]
 gi|122941979|sp|Q0BWA9|MNMG_HYPNA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114737935|gb|ABI76060.1| glucose-inhibited division protein A [Hyphomonas neptunium ATCC
           15444]
          Length = 621

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/611 (54%), Positives = 432/611 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAGCEAAA +A+ GA TALITHK STIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   DFDVIVIGGGHAGCEAAAASARFGARTALITHKRSTIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MGR+AD AGIQFR+LN  KGPAV GPR+Q DR+LYR AMQ E+    NL +I+   
Sbjct: 66  LDGVMGRLADKAGIQFRMLNRSKGPAVWGPRSQIDRKLYREAMQSELADYPNLTIIEDGA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +I  +V         S VV+TTGTFL+G IHIG  +IPAGR+G++P+  L +
Sbjct: 126 EDLIVEDGLIRGVVGLTGQRYGASKVVITTGTFLKGEIHIGAKRIPAGRIGEAPALGLSD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARLDG+TI WD+ E Q ADE+ IPFSF+  +IT RQ++CGIT 
Sbjct: 186 RLYSIGLPMGRLKTGTPARLDGRTIHWDRLEMQPADEQPIPFSFLNSEITVRQVQCGITW 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  ++  SA+YSG I   GPRYCPSIEDK+ RFG+R+ HQ+FLEPEGL+   
Sbjct: 246 TTPETHAIIEAHMNESAVYSGAISGRGPRYCPSIEDKVNRFGDRDRHQVFLEPEGLDDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPEE+Q +FIRTIPGLE   I++  YAIEYDY++P+ L P LE K + GL+
Sbjct: 306 VYPNGISTSLPEEVQEKFIRTIPGLEDAVILQHAYAIEYDYVDPRALSPALEVKLMPGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N+AR ++  D + F R ++YIGV+IDDL ++GV EPY
Sbjct: 366 LAGQINGTTGYEEAGAQGLMAGLNAARAASGKDPVIFDRAEAYIGVLIDDLVTRGVTEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLT  G+  G + E R   F    +     R+LLK+L L+
Sbjct: 426 RMFTSRAEYRLALRADNADQRLTQRGIDAGVVCETRAAMFHVKHRALESARNLLKTLNLS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                    +  QDG+ R+A+E+LSY +    +L  + P+     + ++ +++IE+ Y+A
Sbjct: 486 PAAAVRNGWAVNQDGRIRSAWEYLSYKEICFDHLAQVWPELSAIPAEIVAQIEIEALYSA 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ +E   IP D DY  +  LSNE+++KL  ++P  L QA +IEG+TP 
Sbjct: 546 YLDRQAEDVAALRRDEALSIPSDLDYDLIGGLSNEVRQKLKSVRPGTLGQAGRIEGVTPG 605

Query: 605 ALNLLLIYIKK 615
           AL  LL ++++
Sbjct: 606 ALTALLGHVRR 616


>gi|81170581|sp|Q5LXK0|MNMG_STRT1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170582|sp|Q5M250|MNMG_STRT2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 633

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/630 (42%), Positives = 382/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 125 SMVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFKIKKNQFDRELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|213158566|ref|YP_002319864.1| glucose inhibited division protein A [Acinetobacter baumannii
           AB0057]
 gi|215482980|ref|YP_002325185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB307-0294]
 gi|301347678|ref|ZP_07228419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB056]
 gi|301511675|ref|ZP_07236912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB058]
 gi|301597343|ref|ZP_07242351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB059]
 gi|226704789|sp|B7H0I9|MNMG_ACIB3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704790|sp|B7IC15|MNMG_ACIB5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|213057726|gb|ACJ42628.1| glucose inhibited division protein A [Acinetobacter baumannii
           AB0057]
 gi|213987529|gb|ACJ57828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AB307-0294]
          Length = 626

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|332204145|gb|EGJ18210.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA47901]
          Length = 637

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADIRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|257871381|ref|ZP_05651034.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus gallinarum EG2]
 gi|257805545|gb|EEV34367.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus gallinarum EG2]
          Length = 633

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/627 (41%), Positives = 375/627 (59%), Gaps = 10/627 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y+VIV+G GHAG EAA  A+++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   EEYEVIVVGAGHAGSEAALAASRMGCKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M++ I  ++NL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYASEMKKTIEMEQNLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  I   +V    +  +  +V++T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEKLIVEDGICKGVVTATGARYQAKSVIITAGTALRGEIIIGELKYSSGPNNSQPSIGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECG 241
           +   +   +  R KTGTP R+   TI +D TE Q  DE    FS+ T     +  Q  C 
Sbjct: 187 DHLKELGLEIARFKTGTPPRVKSSTINYDVTEIQPGDEAPNHFSYSTPDSQYKTNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGL+
Sbjct: 247 LTYTNEHTHQIINDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK I+
Sbjct: 307 TEEVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIA 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  
Sbjct: 367 NLFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + +             LK +
Sbjct: 427 EPYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVEEPQYQAYLTKKTAVEEEIQRLKKV 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         L     +  +DG    A EFL  P+ + Q L              IE++
Sbjct: 487 RIKPTPSVQTFLKEKGTAPLKDGV--LANEFLRRPEVNYQELLQFIEANPALKPKEIEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QAS
Sbjct: 545 EIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYEAINGLATEAKQKLQKIQPETIAQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV-KLNE 622
           +I G+ PA +++L++Y+++  + K+ E
Sbjct: 605 RISGVNPADISILMVYVEQGKIAKITE 631


>gi|168487076|ref|ZP_02711584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570028|gb|EDT90556.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1087-00]
          Length = 637

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 376/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|322515818|ref|ZP_08068762.1| glucose inhibited division protein A [Streptococcus vestibularis
           ATCC 49124]
 gi|322125704|gb|EFX97026.1| glucose inhibited division protein A [Streptococcus vestibularis
           ATCC 49124]
          Length = 633

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/630 (42%), Positives = 382/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|168492407|ref|ZP_02716550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573419|gb|EDT93947.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC0288-04]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  +++  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMRRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|312864127|ref|ZP_07724362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus vestibularis F0396]
 gi|311100359|gb|EFQ58567.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus vestibularis F0396]
          Length = 633

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/630 (42%), Positives = 382/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLLDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|227550630|ref|ZP_03980679.1| glucose-inhibited division protein A [Enterococcus faecium TX1330]
 gi|257896277|ref|ZP_05675930.1| glucose-inhibited division protein A [Enterococcus faecium Com12]
 gi|293379358|ref|ZP_06625502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium PC4.1]
 gi|227180231|gb|EEI61203.1| glucose-inhibited division protein A [Enterococcus faecium TX1330]
 gi|257832842|gb|EEV59263.1| glucose-inhibited division protein A [Enterococcus faecium Com12]
 gi|292641881|gb|EFF60047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium PC4.1]
          Length = 633

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 376/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTQMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  I   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGICHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKQRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVDMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKAYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +  +L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQAFLATINAAPLKDGVLASDFLRRPEITYADLLRFIPENEELTRKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|191639863|ref|YP_001989029.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei BL23]
 gi|227533514|ref|ZP_03963563.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (glucose-inhibited division protein A) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|190714165|emb|CAQ68171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Lactobacillus
           casei BL23]
 gi|227188843|gb|EEI68910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (glucose-inhibited division protein A) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|327383977|gb|AEA55453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei LC2W]
 gi|327387161|gb|AEA58635.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei BD-II]
          Length = 633

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|331267203|ref|YP_004326833.1| glucose-inhibited division protein A [Streptococcus oralis Uo5]
 gi|326683875|emb|CBZ01493.1| glucose-inhibited division protein A [Streptococcus oralis Uo5]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 375/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P        +IE 
Sbjct: 485 SIKLKPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPATEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|306828719|ref|ZP_07461911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis ATCC 6249]
 gi|304428897|gb|EFM31985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis ATCC 6249]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 375/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|270291930|ref|ZP_06198145.1| glucose-inhibited division protein A [Streptococcus sp. M143]
 gi|270279458|gb|EFA25300.1| glucose-inhibited division protein A [Streptococcus sp. M143]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGRVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|307707800|ref|ZP_07644277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis NCTC 12261]
 gi|307616060|gb|EFN95256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis NCTC 12261]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|193734233|gb|ACF19885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Kingella kingae]
          Length = 628

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 394/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NL++ Q  
Sbjct: 65  ALGGAMALATDMSGIQFRHLNASKGAAVRATRAQADRILYKAAIRHMLENQPNLELFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 125 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLNNYAGGRAGDPAAQSLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + K  +Q  D  +  FS   +  +  +QI C I
Sbjct: 185 GRLRELNLPQGRLKTGTPPRIDGRTIDFSKLTEQAGDTPVPVFSVRGNAAMHPQQISCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNEQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+R GYAIEYDY +P+ L  +LETK I+G
Sbjct: 305 NEYYPNGISTSLPFDIQIGLVRSMKGLENAHILRAGYAIEYDYFDPRNLKASLETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQFIREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E + + F    ++       L+   
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTELGYQIGLVSEEQWRAFDTKREQIEQEIQRLRGTW 484

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + LS +    +  ++  +    ++ L  P+ +  NL ++     +    + V+E+++
Sbjct: 485 YTPQKLSESEQMRVFGQKLSREANLHDLLRRPNLNYANLMTLPNALPENPLPNNVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E  E K  E   +P D DY+ +  LS E+++KL+  KP  L QAS+
Sbjct: 545 IQVKYQGYIDRQNDEIAERKDIETMKLPADIDYAKVKGLSAEVQQKLNAHKPETLGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I+G+TPA++ LL++++++ 
Sbjct: 605 IQGITPASVALLMVHLRRG 623


>gi|169795494|ref|YP_001713287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii AYE]
 gi|205831482|sp|B0V7I0|MNMG_ACIBY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169148421|emb|CAM86287.1| glucose-inhibited division protein A [Acinetobacter baumannii AYE]
          Length = 626

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMTTQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ + 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|315650201|ref|ZP_07903276.1| glucose inhibited division protein A [Eubacterium saburreum DSM
           3986]
 gi|315487558|gb|EFU77866.1| glucose inhibited division protein A [Eubacterium saburreum DSM
           3986]
          Length = 628

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/626 (40%), Positives = 371/626 (59%), Gaps = 5/626 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +I + YD++V+G GHAGCEAA  +A+LG  T + T    +I  M CNP IGG  KGHLV+
Sbjct: 2   IIEKKYDIVVVGAGHAGCEAALASARLGLKTIIFTVSADSIAMMPCNPNIGGSSKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + 
Sbjct: 62  ELDALGGEMGKCIDKTFIQSKMLNASKGPAVHSLRAQADKQEYSKQMRKTLENTPNLTIC 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q E+     E NI   +            VVL TGT+L      G++    G  G   +N
Sbjct: 122 QKEITKLIIEDNICRGVESISGGKYYAKAVVLATGTYLNARCIYGEVAEYTGPNGLKSAN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S         R KTGTPAR+DG++I +   ++Q+ D  ++PFSF TD   +   Q+
Sbjct: 182 HLSDSLSDVGISLNRFKTGTPARVDGRSIDYTVMQEQYGDNPVVPFSFETDPDSVQKEQV 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +C +  TN  TH II ENI  S ++SG IK  GPRYCPSIEDK+V+F +++ HQIF+EPE
Sbjct: 242 KCYLAYTNEYTHEIIRENIDRSPLFSGAIKGTGPRYCPSIEDKVVKFPDKDRHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T+ +Y +G+S++LPE++Q + IR+I G E  NI+R GYAIEYD I+ ++L  +LE +
Sbjct: 302 GLYTNEMYLSGLSSSLPEDVQDKMIRSIKGFENANIVRNGYAIEYDCIDARQLKDSLEFR 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQ NG++GYEEAA QGL+AGIN+A K    + +   R   YIGV+IDDL +K
Sbjct: 362 NLEGLFAAGQFNGSSGYEEAAVQGLMAGINAAMKVLGREPVIIGRDQGYIGVLIDDLVTK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSR+EYR+ LR DNAD RLT IG K+G I E+R     +  ++       L
Sbjct: 422 ESHEPYRMMTSRSEYRLLLRQDNADLRLTKIGYKVGLISEKRYNSLLEKEKQIANEVERL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K++ + + +     +        +T     E +  P+ +      +  D +K    V ++
Sbjct: 482 KNIHIGATSKVQDFLVRNGSTPLQTSANLAELIRRPELNYDLTAELDDDRKKLRKDVRDQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ  + K+ K  E + IP D DYS + +L  E  +KL  ++P ++ QA
Sbjct: 542 VNINIKYEGYIKRQESQVKQFKKLENKKIPPDIDYSKVNSLRIEAVQKLGKVRPSSVGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLN 621
           S+I G++PA + +LL+Y++    K +
Sbjct: 602 SRISGVSPADITVLLVYLETYKEKRD 627


>gi|239977503|sp|P0CAV0|MNMG_CAUCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|239977561|sp|B8GW33|MNMG_CAUCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|5174778|gb|AAD40695.1| GidA [Caulobacter crescentus CB15]
          Length = 618

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/617 (54%), Positives = 435/617 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSKSWDVIVIGGGHAGCEAAAASARAGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR LYR AMQ E+ S  NLD+I 
Sbjct: 61  IDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRRLYREAMQAELFSTGNLDIIA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   ++  V       R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+  
Sbjct: 121 AAAEDLIVEDGKVAGAVDAAGQAYRAPRVILTTGTFLKGVIHRGEDRIPAGRVGDQPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F  GRLKTGTPARLDGKTI WD+ E Q AD+  +PFS++  +I   QI CG
Sbjct: 181 LSDRLYGLGFQMGRLKTGTPARLDGKTIAWDRLESQAADDTPVPFSYLNHRIDVPQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL+
Sbjct: 241 VTYTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNGIST++ EE Q  F+RTIPGLE+V +IR GYAIEYDY++P+EL+PTLETK++ 
Sbjct: 301 DDTVYPNGISTSVSEETQLLFLRTIPGLEQVEVIRYGYAIEYDYVDPRELYPTLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGLVAG+N+A      +   F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLVAGLNAALAVQGREPAIFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R++LR DNAD RL+  G+ LG +G  R   + +     +  R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLTLRADNADQRLSDRGISLGVVGPVRAAAWTEKKARLDAARAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT             DG  R  +  L+YPD ++ +L  I P+   +++ V E+++IE++
Sbjct: 481 TLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRIWPEVFTWNTDVREQIEIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++ KL+ ++P  L QA++IEG+
Sbjct: 541 YAGYLDRQRADAESLRKDEDLRLPADLDYAEIGSLSNEVRGKLARVRPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKKNTV 618
           TP AL  LL ++++   
Sbjct: 601 TPGALTALLAHVRRGRA 617


>gi|168493830|ref|ZP_02717973.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC3059-06]
 gi|221231052|ref|YP_002510204.1| glucose inhibited division protein A [Streptococcus pneumoniae ATCC
           700669]
 gi|183576020|gb|EDT96548.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC3059-06]
 gi|220673512|emb|CAR67992.1| glucose inhibited division protein A [Streptococcus pneumoniae ATCC
           700669]
 gi|332076576|gb|EGI87038.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA17545]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMILPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|148987862|ref|ZP_01819325.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926326|gb|EDK77399.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP6-BS73]
          Length = 637

 Score =  767 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGRPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLG 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|78486514|ref|YP_392439.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thiomicrospira crunogena XCL-2]
 gi|123554882|sp|Q31DK8|MNMG_THICR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78364800|gb|ABB42765.1| glucose inhibited division protein A [Thiomicrospira crunogena
           XCL-2]
          Length = 633

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/618 (46%), Positives = 389/618 (62%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  AA++G  T L+T    T+G MSCNPAIGG+GKGHLV+EIDA
Sbjct: 7   NFDVIVVGGGHAGTEAALAAARMGVRTLLLTDNIDTLGQMSCNPAIGGIGKGHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D +GIQFR LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V
Sbjct: 67  LGGAMAMAIDESGIQFRTLNASKGPAVRATRAQADRVLYRQAIRMRLENQVNLTIFQQSV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +     +         VVLT GTFL G IHIG      GR GD+PSN L  
Sbjct: 127 EDLILEGDKVVGAETKMGLKFYAHQVVLTAGTFLAGRIHIGLQNYEGGRAGDAPSNRLAA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
              +     GRLKTGTP R+D +T+ ++  + Q  D+ +  FS+M    +   Q+ C IT
Sbjct: 187 KLRELALPVGRLKTGTPPRIDARTVDFEAMQMQPGDDPMPVFSYMGKVSMHPEQMPCYIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TN +TH  I +++  S +YS   +I S GPRYCPSIEDK++RF ERN HQ+F+EPEGL 
Sbjct: 247 YTNEQTHDFIRDSLDQSPMYSDAGEIDSVGPRYCPSIEDKVMRFSERNQHQVFIEPEGLT 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +YPNGIST+LP E Q Q ++++ GLE   I+RPGYAIEYDY +P+ L PTLET+ I 
Sbjct: 307 SNELYPNGISTSLPFETQMQIVQSMKGLENARIMRPGYAIEYDYFDPRGLRPTLETQAIH 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGL+AG+N+AR++   +     R ++YIGV++DDL + G  
Sbjct: 367 GLYFAGQINGTTGYEEAAAQGLLAGMNAARRAQMKEQWYPRRDEAYIGVLVDDLITLGTS 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT IG + G + + R   F   ++      + LK  
Sbjct: 427 EPYRMFTSRAEYRLMLREDNADQRLTAIGREFGLVDDARWLSFEGKMETMEAELARLKQT 486

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQ 537
            +  K+     + ++      K +T ++ L  P+ S   L ++           V+E+++
Sbjct: 487 WIHPKHAEAKKAEALMDLPLSKEQTLFDLLKRPNVSYDALATMDMFGNAVTDPTVVEQIE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  RQ  +  +++  E   IP   D   +  LSNE+K+KL   KP  L  AS+
Sbjct: 547 IEAKYAGYIARQQEDIDKLRRAENVEIPDALDLDKISGLSNEVKQKLRDHKPATLGMASR 606

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA++LLLIYIKK
Sbjct: 607 ISGITPAAVSLLLIYIKK 624


>gi|253681320|ref|ZP_04862118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum D str. 1873]
 gi|253562558|gb|EES92009.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum D str. 1873]
          Length = 630

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/620 (42%), Positives = 389/620 (62%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV VIG GHAGCEAA  +A+LG +T +     +++  M+CNP IGG  KGHLVREIDA
Sbjct: 7   EFDVAVIGAGHAGCEAALASARLGINTIVFATDLASVAMMACNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+  + + ENL + Q E+
Sbjct: 67  LGGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKKKYSERMKHVLETTENLHLKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E   +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  
Sbjct: 127 IKVDIENGKVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ +++ + K  +Q  D+ ++PFSFM++ I   QI C +T 
Sbjct: 187 SLIDSGIKLTRFKTGTPARINRRSVDFSKMIEQKGDDNIVPFSFMSENIDRDQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ 
Sbjct: 247 SGDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K+I GLF
Sbjct: 307 LYVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLELSLEFKEIDGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA  QGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQMNGSSGYEEAGCQGLIAGINAALKLKGEKPLILKRSDAYIGVLIDDLVTKGTQEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + + R  +F K   +       LK++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTEMGRKIGLVKDERYSKFTKRKADIEKEIERLKNIQIT 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +    +I+     K  + YE +  P+ +   +  +  +  K S  V E++ I S 
Sbjct: 487 NKQEVNKFLENINSSALKKPISLYELIKRPELNYFIVEELDENRPKLSKDVQEQVNIISK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK+FDY+ +  L  E  +KL  +KP ++ QAS+I G+
Sbjct: 547 YEGYIQKQLEQVEQFKKLENRLIPKEFDYTEVKGLRKEAIQKLDKIKPVSIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           +PA +++LLI +++     +
Sbjct: 607 SPADISVLLIVLEQYNRNNS 626


>gi|332969561|gb|EGK08579.1| glucose inhibited division protein A [Kingella kingae ATCC 23330]
          Length = 640

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 394/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 17  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NL++ Q  
Sbjct: 77  ALGGAMALATDMSGIQFRHLNASKGAAVRATRAQADRILYKAAIRHMLENQPNLELFQQA 136

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 137 VDDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLNNYAGGRAGDPAAQSLG 196

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + K  +Q  D  +  FS   +  +  +QI C I
Sbjct: 197 GRLRELNLPQGRLKTGTPPRIDGRTIDFSKLTEQAGDTPVPVFSVRGNAAMHPQQISCWI 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 257 THTNEQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+R GYAIEYDY +P+ L  +LETK I+G
Sbjct: 317 NEYYPNGISTSLPFDIQIGLVRSMKGLENAHILRAGYAIEYDYFDPRNLKASLETKTIAG 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 377 LFFAGQINGTTGYEEAAAQGLLAGANAVQFIREQDPLLLRREQAYLGVLVDDLITKGVNE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E + + F    ++       L+   
Sbjct: 437 PYRMFTSRAEYRLQLREDNADMRLTELGYQIGLVSEEQWRAFDTKREQIEQEIQRLRGTW 496

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + LS +    +  ++  +    ++ L  P+ +  NL ++     +    + V+E+++
Sbjct: 497 YTPQKLSESEQMRVFGQKLSREANLHDLLRRPNLNYANLMTLPNALPENPLPNNVVEQVE 556

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E  E K  E   +P D DY+ +  LS E+++KL+  KP  L QAS+
Sbjct: 557 IQVKYQGYIDRQNDEIAERKDIETMKLPADIDYAKVKGLSAEVQQKLNAHKPETLGQASR 616

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I+G+TPA++ LL++++++ 
Sbjct: 617 IQGITPASVALLMVHLRRG 635


>gi|228478104|ref|ZP_04062715.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus salivarius SK126]
 gi|228250284|gb|EEK09537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus salivarius SK126]
          Length = 633

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/630 (42%), Positives = 381/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            + ++DVIV+G GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FDENFDVIVVGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMVDEILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWSIFEIKKNQFDSELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + +I
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKII 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|289168788|ref|YP_003447057.1| NAD/FAD-binding enzyme GidA [Streptococcus mitis B6]
 gi|288908355|emb|CBJ23197.1| NAD/FAD-binding enzyme GidA [Streptococcus mitis B6]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNHSISKTL 633


>gi|322378088|ref|ZP_08052574.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. M334]
 gi|321280925|gb|EFX57939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. M334]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G  +G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGRDIGLVDDERWSRFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|307711097|ref|ZP_07647519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK321]
 gi|307617059|gb|EFN96237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK321]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 373/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     ++  +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISRTL 633


>gi|332202055|gb|EGJ16124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA41317]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 376/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMINEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|306826060|ref|ZP_07459396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431776|gb|EFM34756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/627 (41%), Positives = 376/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMLRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P A      VIE 
Sbjct: 485 SIKLKPVQETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKVINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|169833429|ref|YP_001693656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Hungary19A-6]
 gi|205831573|sp|B1I835|MNMG_STRPI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168995931|gb|ACA36543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWTRFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|293364411|ref|ZP_06611137.1| glucose-inhibited division protein A [Streptococcus oralis ATCC
           35037]
 gi|307702624|ref|ZP_07639576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus oralis ATCC 35037]
 gi|291317257|gb|EFE57684.1| glucose-inhibited division protein A [Streptococcus oralis ATCC
           35037]
 gi|307623740|gb|EFO02725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus oralis ATCC 35037]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|307705800|ref|ZP_07642643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK597]
 gi|307620632|gb|EFN99725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mitis SK597]
          Length = 637

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 375/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|210614311|ref|ZP_03290159.1| hypothetical protein CLONEX_02373 [Clostridium nexile DSM 1787]
 gi|210150727|gb|EEA81736.1| hypothetical protein CLONEX_02373 [Clostridium nexile DSM 1787]
          Length = 648

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/628 (41%), Positives = 372/628 (59%), Gaps = 19/628 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLV+E+DA
Sbjct: 14  EYDVVVVGAGHAGCEAALACARLGIKTIIFTVSVDSIALMPCNPNIGGSSKGHLVKEVDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M+  + +QENL++ Q EV
Sbjct: 74  LGGEMGKVIDQTFIQSKMLNKSKGPAVHSLRAQADKANYSKTMRMVLENQENLEIKQAEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   I  +     ++ +C  V+L TGT+L+     G++    G  G   +  L +
Sbjct: 134 TDILAKDGKIEGVQTYSGAVYKCKAVILCTGTYLKARCIYGEISQETGPNGLQAATYLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           S  K   +  R KTGTPAR+D  +I + K E+QF DER++PFSF T  + +   Q  C +
Sbjct: 194 SLKKLGIEMYRFKTGTPARIDKNSIDFSKMEEQFGDERVVPFSFTTNPEDVQIEQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL+T
Sbjct: 254 TYTNEKTHEIIRANLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKNKHQVFIEPEGLDT 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q+   R++PGLE   I+R  YAIEYD I+ ++L+PTLE K + G
Sbjct: 314 NEMYVGGMSSSLPEDVQYAMYRSVPGLEHAKIVRNAYAIEYDCIDARQLYPTLEFKNVGG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+  GQ NG++GYEEAAAQGLVAGIN+A K    + I   R+ +YIGV+IDDL +K   E
Sbjct: 374 LYSGGQFNGSSGYEEAAAQGLVAGINAALKILGREQIVLDRSQAYIGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT IG ++G I + R +   +  +        L+   
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADQRLTKIGHEIGLISDERYEYLLEKERIIVSEVERLEHTN 493

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSIC--------------PDA 525
           + +       +            T  E +  P+ S + L  I                + 
Sbjct: 494 IGAAQEVQDLLVKYGSTPLNSGTTLAELIRRPELSYEVLEPIDKRRNIVQKCAEKYPENV 553

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            K    V+E++ I   Y  Y  RQ  + ++ K  EK+ IP+D DY  + +L  E  +KL 
Sbjct: 554 DKLCQEVVEQVNINIKYDGYIKRQQKQVEQFKKLEKKRIPEDIDYDVIKSLRIEAVQKLK 613

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYI 613
             +P ++ QAS+I G++PA +++LL+Y+
Sbjct: 614 QYRPLSIGQASRISGVSPADISVLLVYL 641


>gi|94995350|ref|YP_603448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10750]
 gi|166200622|sp|Q1J457|MNMG_STRPF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94548858|gb|ABF38904.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10750]
          Length = 632

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTENYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|322375109|ref|ZP_08049623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C300]
 gi|321280609|gb|EFX57648.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C300]
          Length = 637

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKHELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMQRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++   I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVVFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|322388411|ref|ZP_08062014.1| glucose inhibited division protein A [Streptococcus infantis ATCC
           700779]
 gi|321140724|gb|EFX36226.1| glucose inhibited division protein A [Streptococcus infantis ATCC
           700779]
          Length = 638

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 374/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGIEIGRFKTGTPPRVKASSINYDVTEIQPGDETPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|149010996|ref|ZP_01832301.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764632|gb|EDK71562.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
          Length = 637

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQDKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAIDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|94989479|ref|YP_597580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS9429]
 gi|94993366|ref|YP_601465.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS2096]
 gi|139474608|ref|YP_001129324.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes str. Manfredo]
 gi|209560261|ref|YP_002286733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes NZ131]
 gi|306826441|ref|ZP_07459753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes ATCC 10782]
 gi|166200619|sp|Q1J990|MNMG_STRPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200620|sp|Q1JJD7|MNMG_STRPC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200623|sp|A2RH03|MNMG_STRPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94542987|gb|ABF33036.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus pyogenes MGAS9429]
 gi|94546874|gb|ABF36921.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS2096]
 gi|134272855|emb|CAM31135.1| glucose inhibited division protein A [Streptococcus pyogenes str.
           Manfredo]
 gi|209541462|gb|ACI62038.1| Glucose inhibited division protein A [Streptococcus pyogenes NZ131]
 gi|304431371|gb|EFM34368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes ATCC 10782]
          Length = 632

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|309379098|emb|CBX22229.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 631

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/619 (46%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S     ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPIMSVRGSAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGCKIGLVGEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         ++ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|257878639|ref|ZP_05658292.1| glucose-inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257881305|ref|ZP_05660958.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|293569166|ref|ZP_06680472.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1071]
 gi|294619738|ref|ZP_06699143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1679]
 gi|294623752|ref|ZP_06702580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium U0317]
 gi|314940138|ref|ZP_07847318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a04]
 gi|314943031|ref|ZP_07849835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133C]
 gi|314953437|ref|ZP_07856355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133A]
 gi|314993824|ref|ZP_07859160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133B]
 gi|314998151|ref|ZP_07863033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a01]
 gi|257812867|gb|EEV41625.1| glucose-inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257816963|gb|EEV44291.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|291588135|gb|EFF19977.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1071]
 gi|291594008|gb|EFF25477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1679]
 gi|291596706|gb|EFF27929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium U0317]
 gi|313587863|gb|EFR66708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a01]
 gi|313591715|gb|EFR70560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133B]
 gi|313594540|gb|EFR73385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133A]
 gi|313598231|gb|EFR77076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133C]
 gi|313640643|gb|EFS05223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0133a04]
          Length = 633

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 375/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +   L    P+  + +   IE+++I+ 
Sbjct: 489 KPTEEVQDFLATINAAPLKDGVLASDFLRRPEITYAELLRFIPENEELTRKEIEQVEIQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|261400118|ref|ZP_05986243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria lactamica ATCC 23970]
 gi|269210351|gb|EEZ76806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria lactamica ATCC 23970]
          Length = 631

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/619 (45%), Positives = 385/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVTLDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +   S     ++  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPIMSVRGSAEMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G + E + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGRKIGLVSEAQWRMFNEKREAVEREIQRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T + L+      +  ++  +    ++ L  P+     L ++         ++ VIE+++
Sbjct: 488 YTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAMPSERLAAEVIEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P D DY  +  LS E+++KL+  KP  + QAS+
Sbjct: 548 IQVKYQGYIDRQNEEIDSRRDIETLKLPDDIDYGKVKGLSAEVQQKLNQHKPETVGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 608 ISGVTPAAVALLMVHLKRG 626


>gi|222056912|ref|YP_002539274.1| glucose inhibited division protein A [Geobacter sp. FRC-32]
 gi|221566201|gb|ACM22173.1| glucose inhibited division protein A [Geobacter sp. FRC-32]
          Length = 624

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/619 (47%), Positives = 392/619 (63%), Gaps = 3/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + ++ YDVIV+GGGHAGCEAA  AA++G  T L+T     I  MSCNPAIGGL KGHLV+
Sbjct: 3   VYDKEYDVIVVGGGHAGCEAALAAARMGCETLLLTINLDAIALMSCNPAIGGLAKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  DA GIQFR+LN KKGPAVR  R QAD++ YRL M+R +  QENL + 
Sbjct: 63  EIDALGGEMAKNIDATGIQFRILNTKKGPAVRASRAQADKQQYRLRMKRVLEEQENLHLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     +   +  +  +        TV+LTTGTF+RG+IHIG +    GR GD PS 
Sbjct: 123 QAEVTALVMDGETVVGVDTKAGVRHMAKTVILTTGTFMRGLIHIGLVHYSGGRAGDLPSV 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L ++  +  FD GRLKTGTPARLD +TI + + E Q+ D++ IPFSF T++I N+Q+ C
Sbjct: 183 GLSDNLRELGFDVGRLKTGTPARLDSRTIDFGRLEAQYGDDQPIPFSFSTERILNKQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN  +H II   +  S +YSG I+  GPRYCPSIEDK+VRF E++ HQ F+EPEGL
Sbjct: 243 HIAYTNERSHDIIRSGLDRSPLYSGIIEGVGPRYCPSIEDKVVRFPEKDRHQTFIEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VYP+G+ST+LP ++Q +F R+I GLE+V I+RP YAIEYDY++P +L  +LETK  
Sbjct: 303 DTVEVYPSGLSTSLPIDVQWKFYRSIAGLERVEIMRPAYAIEYDYVDPIQLHASLETKPA 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R D+YIGVMIDDL + G 
Sbjct: 363 RNLYHAGQINGTSGYEEAAAQGLLAGINAALRVQGREPLILGRNDAYIGVMIDDLVTMGS 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G ++G + +     F +  +        L+ 
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLRERGYEIGLVRDEEYGIFLRKKEMIKEELQRLRQ 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             L    +    +        + A    + L  PD +  +L  I     +  + V E+++
Sbjct: 483 EKLIPSQVDDDFLEDFDLKGMQNALTYEQLLRRPDVTSSDLSRIDEKIMETPADVREQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+ +    K  E   IP+D  Y  L  LS E++EKL   KP  L QAS+
Sbjct: 543 IQIKYQGYIDRQLEQVGRAKKLEHTKIPQDMQYMGLSGLSAEVQEKLHKFKPDTLGQASR 602

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ +L I +K  
Sbjct: 603 IPGVTPAAITILSIALKSR 621


>gi|222153938|ref|YP_002563115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus uberis 0140J]
 gi|222114751|emb|CAR43905.1| glucose inhibited division protein A [Streptococcus uberis 0140J]
          Length = 633

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/629 (41%), Positives = 378/629 (60%), Gaps = 9/629 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+VIG GHAG EA+  AA++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEDYDVVVIGAGHAGVEASLAAARMGCKTLLATINIDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKNLYAREMKHTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SIIDDILVEDGKVVGVLTATGQKFSARAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D +   FSF++  +     QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDETEIQPGDPKPNHFSFLSKDEDYLQEQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIITKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKELLHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + ++R + F     +++     L+
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRTVGLVDDQRWETFQIKKNQFDTEMRRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+     + +    A +     +IE 
Sbjct: 485 SIKLKPIKETNERVQALGFKPLTDAMTAKEFMRRPEIDYATVVTFIGQAAETLDPKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKKIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK---KNTVKLN 621
           S+I G+ PA +++L++YI+   K   KL+
Sbjct: 605 SRISGVNPADISILMVYIEGNGKARRKLS 633


>gi|319946008|ref|ZP_08020257.1| glucose inhibited division protein A [Streptococcus australis ATCC
           700641]
 gi|319747816|gb|EFW00061.1| glucose inhibited division protein A [Streptococcus australis ATCC
           700641]
          Length = 635

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  + CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFLPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+ELY   M+R + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKELYSKEMRRTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVIGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I +++TE Q  DE    FS+ +  +     QI 
Sbjct: 185 LADNLKNLGLEIGRFKTGTPPRVKASSINYEETEIQPGDENPNHFSYNSRDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ++H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNSQSHEIINSNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     ++      L 
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGREVGLVDDERWARFETKKYQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P   +    +IE 
Sbjct: 485 SIKLKPVKETNEKVAALGFKPLTDAVTAKEFLRRPEVSYQDVVNFIGPATEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|16127985|ref|NP_422549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caulobacter crescentus CB15]
 gi|221236807|ref|YP_002519244.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Caulobacter crescentus NA1000]
 gi|13425529|gb|AAK25717.1| glucose inhibited division protein A [Caulobacter crescentus CB15]
 gi|220965980|gb|ACL97336.1| glucose inhibited division protein A [Caulobacter crescentus
           NA1000]
          Length = 640

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/618 (54%), Positives = 436/618 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++S+DVIVIGGGHAGCEAAA +A+ GA T L+THK  TIG MSCNPAIGGLGKGHLVR
Sbjct: 22  VLSKSWDVIVIGGGHAGCEAAAASARAGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVR 81

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGR+AD AGIQFR+LN  KGPAVRGPR+Q DR LYR AMQ E+ S  NLD+I
Sbjct: 82  EIDALDGVMGRMADKAGIQFRMLNRSKGPAVRGPRSQIDRRLYREAMQAELFSTGNLDII 141

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E   ++  V       R   V+LTTGTFL+GVIH G+ +IPAGR+GD P+ 
Sbjct: 142 AAAAEDLIVEDGKVAGAVDAAGQAYRAPRVILTTGTFLKGVIHRGEDRIPAGRVGDQPAI 201

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +      F  GRLKTGTPARLDGKTI WD+ E Q AD+  +PFS++  +I   QI C
Sbjct: 202 GLSDRLYGLGFQMGRLKTGTPARLDGKTIAWDRLESQAADDTPVPFSYLNHRIDVPQIAC 261

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+T T  ETHRII E I  S +YSG     GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 262 GVTYTTEETHRIIAERIGESLVYSGRATGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGL 321

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST++ EE Q  F+RTIPGLE+V +IR GYAIEYDY++P+EL+PTLETK++
Sbjct: 322 DDDTVYPNGISTSVSEETQLLFLRTIPGLEQVEVIRYGYAIEYDYVDPRELYPTLETKRL 381

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEA AQGLVAG+N+A      +   F+R ++YIGVMIDDL ++GV
Sbjct: 382 PGLYLAGQINGTTGYEEAGAQGLVAGLNAALAVQGREPAIFARDEAYIGVMIDDLVTRGV 441

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R++LR DNAD RL+  G+ LG +G  R   + +     +  R+  +S
Sbjct: 442 TEPYRMFTSRAEFRLTLRADNADQRLSDRGISLGVVGPVRAAAWTEKKARLDAARAFARS 501

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + LT             DG  R  +  L+YPD ++ +L  I P+   +++ V E+++IE+
Sbjct: 502 VTLTPNEAVKAGFKVNSDGVRRDVFAMLAYPDVTLDDLGRIWPEVFTWNTDVREQIEIEA 561

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +A+ ++ +E   +P D DY+ + +LSNE++ KL+ ++P  L QA++IEG
Sbjct: 562 AYAGYLDRQRADAESLRKDEDLRLPADLDYAEIGSLSNEVRGKLARVRPLTLGQAARIEG 621

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TP AL  LL ++++   
Sbjct: 622 VTPGALTALLAHVRRGRA 639


>gi|317050325|ref|YP_004111441.1| glucose inhibited division protein A [Desulfurispirillum indicum
           S5]
 gi|316945409|gb|ADU64885.1| glucose inhibited division protein A [Desulfurispirillum indicum
           S5]
          Length = 630

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/622 (45%), Positives = 390/622 (62%), Gaps = 3/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             R++DVIV+G GHAGCEAA  AA++G STAL +    TI  MSCNPAIGG+ KGHLV+E
Sbjct: 4   YTRTFDVIVVGAGHAGCEAALAAARMGCSTALFSINLDTIAQMSCNPAIGGVAKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    DA GIQFR LN  KGPAVR  R QAD++LYR  M++ +  Q NL + Q
Sbjct: 64  IDALGGEMALNIDATGIQFRTLNTSKGPAVRSSRAQADKQLYRKRMKQVLELQPNLHITQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G  T+  +I+ ++ Q         VVLT GTF+ G +HIG    PAGR+G+ P+  
Sbjct: 124 DMVTGIFTQNGVIAGVISQIGVRYHARAVVLTAGTFMNGTVHIGFESFPAGRLGEPPALG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F+ GRLKTGTPAR++  +I + + E+Q  D    PFSFM   I   Q+ C 
Sbjct: 184 LSESLQEHGFELGRLKTGTPARVNRHSIDFSRMEEQPGDPDPRPFSFMNTHIRQSQVPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I+ TN  TH II  NI+ SA+YSG I   GPRYCPSIEDK+V+F +++ HQ FLEPEG +
Sbjct: 244 ISWTNERTHEIIRRNIERSALYSGKITGIGPRYCPSIEDKVVKFPDKDRHQTFLEPEGYD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  Y NG+ST+LP ++Q +F RTIPGLE+V ++RP YAIEYD+I P +L  TLETK + 
Sbjct: 304 TNEFYINGMSTSLPVDVQMEFYRTIPGLERVELMRPAYAIEYDFIPPTQLCATLETKPVR 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAAAQGL+AGIN+A +++  + +   R   YIGVM+DDL +KG  
Sbjct: 364 GLFHAGQINGTSGYEEAAAQGLLAGINAALRASGREPVTIGREQGYIGVMVDDLVTKGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT +G ++G + + R +RF          +  L++L
Sbjct: 424 EPYRMFTSRAEHRLVLREDNADLRLTELGRRVGLVSDERYRRFEIKRTMVEAEKKRLQNL 483

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +      N     +      +   A   L   +   ++L  +        + V E+++I
Sbjct: 484 TVKPAPEVNQLLAELGTAVLAEPLRAAALLKRHEVHYKHLVQMGAGLAGLPADVREQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  R+    +     ++  IP  FDY S+  LS E++ KL  ++P  L QA +I
Sbjct: 544 QLQYEGYIQREEKFIQHQMKLDRVQIPASFDYESVSGLSREVRTKLLEIRPATLGQALRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+TPAA+++L I+++    + 
Sbjct: 604 SGVTPAAVSVLSIHLENLRRQQ 625


>gi|182683093|ref|YP_001834840.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
 gi|182628427|gb|ACB89375.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
          Length = 637

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   I  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKIVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMDFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|15675920|ref|NP_270094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes M1 GAS]
 gi|71911651|ref|YP_283201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS5005]
 gi|21263681|sp|Q99XI8|MNMG_STRP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|13623159|gb|AAK34815.1| glucose inhibited division protein [Streptococcus pyogenes M1 GAS]
 gi|71854433|gb|AAZ52456.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS5005]
          Length = 632

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPTNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|71904532|ref|YP_281335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS6180]
 gi|123639044|sp|Q48QN0|MNMG_STRPM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71803627|gb|AAX72980.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS6180]
          Length = 632

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDAEYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|331702697|ref|YP_004399656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus buchneri NRRL B-30929]
 gi|329130040|gb|AEB74593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus buchneri NRRL B-30929]
          Length = 643

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/625 (41%), Positives = 365/625 (58%), Gaps = 8/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+D
Sbjct: 16  QDYDVIVVGAGHAGCEAALAAARMGNKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREVD 75

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAV+  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 76  ALGGEMGKNIDKTYIQMRMLNTGKGPAVQALRAQADKHAYHAEMKHTIEKEPNLTLRQGI 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +      VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 136 VDSLIVEDGVCKGVITNTGAECYAKAVVIAAGTAARGKIIIGELMYASGPNNSQPAEKLS 195

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
            +     FD  R KTGTP R+DG TI + KTE+Q  DE+   FSF +          Q+ 
Sbjct: 196 GNLEALGFDLERFKTGTPPRVDGTTIDYSKTEEQPGDEKPHHFSFESSDENYLAVKDQLS 255

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II +N+  + +++G I+  GPRYCPSIEDK+VRF +++ HQ+FLEPEG
Sbjct: 256 CWLTYTNETTHKIIRDNLDRAPMFTGVIEGVGPRYCPSIEDKVVRFADKSRHQLFLEPEG 315

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y +G+ST++PEE+Q + I +I G+E   ++RPGYAIEYD + P +L PTLETK 
Sbjct: 316 RKTEEWYVDGLSTSMPEEVQQKMIHSIVGMENAQMMRPGYAIEYDVVAPYQLKPTLETKV 375

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QGL+AGIN+ R++         R ++YIGVMIDDL +KG
Sbjct: 376 VKNLFTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKGPFVLKRNEAYIGVMIDDLVTKG 435

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G I + R  +F    +        L 
Sbjct: 436 TKEPYRLLTSRAEYRLLLRTDNADMRLTEKGHEIGLISDERYAKFLAKKKAIEAEFDRLN 495

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER 535
           ++ +   +  +  +    D   +    A  FL  P    Q L    P A  K    VIE+
Sbjct: 496 TIRIKPSDEVNQFVQEHGDKPLQDGVLASIFLRRPYVDYQTLMRFIPQAETKPDRHVIEQ 555

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I++ YA Y  +     +++K  E + IP   DY ++  ++ E ++KL  + P  + QA
Sbjct: 556 IEIQTKYAGYIKKAEQSVEKMKRMEAKKIPDRIDYDAIDGIATEARQKLQKIHPETIAQA 615

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKL 620
           S+I G+ PA + +L +YI++  +  
Sbjct: 616 SRISGVNPADIAILSVYIQQGKISK 640


>gi|168483771|ref|ZP_02708723.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042816|gb|EDT50862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203294|gb|EGJ17361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae GA47368]
          Length = 637

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDKILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  D     FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDAVPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|313111484|ref|ZP_07797285.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 39016]
 gi|310883787|gb|EFQ42381.1| glucose-inhibited division protein A [Pseudomonas aeruginosa 39016]
          Length = 603

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/595 (46%), Positives = 364/595 (61%), Gaps = 5/595 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GK HLV+EIDAL G M    D  GIQFR+LN +
Sbjct: 1   MGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDALGGAMAEATDKGGIQFRILNSR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q        E++ +  +V Q      
Sbjct: 61  KGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACDDLIVEQDQVRGVVTQMGLRFH 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLTTGTFL G+IHIG      GR GD PS +L     +     GRLKTGTP R+DG
Sbjct: 121 ADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARRLRELPLRVGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +    +Q  D  +   SF+  K  +  Q+ C IT TN  TH II  N+  S +YSG
Sbjct: 181 RSVDFSVMTEQPGDTPIPVMSFLGSKEQHPEQVSCWITHTNARTHEIIAANLDRSPMYSG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF ++  HQ+FLEPEGL T  +YPNGIST+LP ++Q Q +R+
Sbjct: 241 VIEGIGPRYCPSIEDKIHRFADKESHQVFLEPEGLTTHELYPNGISTSLPFDVQLQIVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYD+ +P++L  +LETK I GLF AGQINGTTGYEEA AQGL+A
Sbjct: 301 IRGMENAHIVRPGYAIEYDFFDPRDLRYSLETKVIGGLFFAGQINGTTGYEEAGAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G N+A +S   D  C  R ++YIGV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPYRMFTSRAEYRLILREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTR 502
           LT  G +LG + +RR   F    +        LKS  +        +I+ +         
Sbjct: 421 LTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVRPNTPQGDAIAERFGTPLTHEY 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
                LS P+     L  I  DA   +  V E+++I + YA Y  RQ  E   ++  E  
Sbjct: 481 NLLNLLSRPEIDYAGLVEITGDAVD-NPQVAEQVEIRTKYAGYIDRQQEEIARLRASEDT 539

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            +P D DY  +  LS E++ KL+  +P  L QAS+I G+TPAA++LLLI++KK  
Sbjct: 540 RLPVDIDYLGISGLSKEIQNKLNQARPETLGQASRIPGVTPAAISLLLIHLKKRA 594


>gi|297519012|ref|ZP_06937398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli OP50]
          Length = 583

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/578 (46%), Positives = 367/578 (63%), Gaps = 5/578 (0%)

Query: 46  CNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
           CNPAIGG+GKGHLV+E+DAL GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR 
Sbjct: 1   CNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQ 60

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IHIG
Sbjct: 61  AVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG 120

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                 GR GD PS  L     +     GRLKTGTP R+D +TI +    +Q  D  +  
Sbjct: 121 LDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPV 180

Query: 226 FSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           FSFM +   + Q + C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++R
Sbjct: 181 FSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMR 240

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD
Sbjct: 241 FADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYD 300

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           + +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+
Sbjct: 301 FFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARS 360

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF
Sbjct: 361 QAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARF 420

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSI 521
            + ++     R  LKS  +T    ++  ++        +  +  + L  P+ + + L ++
Sbjct: 421 NEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL 480

Query: 522 CPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
            P A         E+++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+
Sbjct: 481 TPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEV 540

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             KL+  KP ++ QAS+I G+TPAA+++LL+++KK  +
Sbjct: 541 IAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM 578


>gi|254292377|ref|YP_003058400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hirschia baltica ATCC 49814]
 gi|254040908|gb|ACT57703.1| glucose inhibited division protein A [Hirschia baltica ATCC 49814]
          Length = 620

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/616 (54%), Positives = 441/616 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  +DVI++GGGHAG EAA+ AA+ GA+TALITHK STIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MNLDFDVIIVGGGHAGVEAASAAARAGANTALITHKASTIGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD +GIQFR+LN  KGPAV+GPRTQADR+LYR A+Q  + +Q+NL VI+
Sbjct: 61  IDALDGIMGRAADVSGIQFRLLNRSKGPAVQGPRTQADRKLYRNAVQAAVKAQKNLTVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E +++S +V +  ++ +   VVLTTGTFL G+IH G+ +IPAGR+GD P+  
Sbjct: 121 DGIDDLTFENDVLSGVVGESGTIYKSKAVVLTTGTFLDGIIHRGEERIPAGRIGDQPAKE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D D GRLKTGTPARLD  +I W + E Q AD+  +PFSF+TDKIT  QIECG
Sbjct: 181 LSKRLYSLDLDMGRLKTGTPARLDKNSIDWSQLEMQPADDDPVPFSFLTDKITVPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I +NI  SA+YSG I   GPRYCPSIEDK+ RF +RN HQIFLEPEGL+
Sbjct: 241 MTYTNEETHKVINDNISKSAVYSGAIAGKGPRYCPSIEDKVTRFADRNQHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D+VYPNGIST+LP ++Q +F+RT+ GLE V +++ GYAIEYDY++P+EL   L+ KK+ 
Sbjct: 301 DDLVYPNGISTSLPADVQDKFLRTMKGLENVKVVQYGYAIEYDYVDPRELKADLQLKKVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGL+AG+N+AR +  L+ +   R+ +YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLMAGVNAARSTQGLEPVVLDRSQAYIGVMIDDLVTRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP   +   I E R+  F   +      R LL+ L
Sbjct: 421 EPYRMFTSRAEYRLSLRADNADQRLTPFADEWNIISEDRRSAFNNKLNALQHGRELLQRL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   QDG+ R+AYE L++P    + L    P+    S  V E+L IE+ 
Sbjct: 481 AMTPNEATDIGVKITQDGRRRSAYEMLAFPHVEYETLAKKWPELLDLSKQVQEQLSIEAI 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + +  + +E+  + +  DY  +  LS+E++ KL ++KP  L QAS+IEG+
Sbjct: 541 YATYLDRQKADIESFQKDERLKLSETLDYKLVGGLSHEVRSKLELIKPITLGQASRIEGV 600

Query: 602 TPAALNLLLIYIKKNT 617
           TP A+  LL Y+KK+ 
Sbjct: 601 TPGAITALLAYVKKSQ 616


>gi|149911787|ref|ZP_01900391.1| glucose-inhibited division protein A [Moritella sp. PE36]
 gi|149805133|gb|EDM65155.1| glucose-inhibited division protein A [Moritella sp. PE36]
          Length = 627

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/598 (46%), Positives = 377/598 (63%), Gaps = 5/598 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDAL G+MG+  D  GIQFR LN 
Sbjct: 27  RMGRKTLLLTHNIDTLGHMSCNPAIGGIGKGHLVKEIDALGGIMGQATDLGGIQFRTLNS 86

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAVR  R QADR LY+ A+++++ +Q+NL + Q  V     E + +  ++ Q     
Sbjct: 87  SKGPAVRATRAQADRLLYKSAVRQKLENQQNLTIFQQSVDDLIIENDRVVGVMTQAGLSF 146

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           R  +VVLT GTFL G+IHIG    P GR GD  S SL     +    TGRLKTGTP R+D
Sbjct: 147 RAKSVVLTVGTFLDGLIHIGLQNYPGGRAGDPASVSLAARLRELPIRTGRLKTGTPPRID 206

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYS 264
           G+TI +   E+Q  D+    FSF+  +  + Q I C IT TN +TH +I   +  S +Y+
Sbjct: 207 GRTIDFSVMEEQHGDKPTPVFSFIGSRKDHPQQIPCYITHTNNKTHDVIRSGMDRSPMYT 266

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF ++  HQIF+EPEGL T  VYPNGIST+LP ++Q   +R
Sbjct: 267 GVIEGIGPRYCPSIEDKITRFADKESHQIFIEPEGLTTHEVYPNGISTSLPYDVQVDLVR 326

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE  +I RPGYAIEYDY +P++L  TLE+K I GLFLAGQINGTTGYEEAAAQGL+
Sbjct: 327 SIRGLENAHITRPGYAIEYDYFDPRDLKLTLESKFIEGLFLAGQINGTTGYEEAAAQGLL 386

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AG+N+AR + + D     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD 
Sbjct: 387 AGLNAARTAREEDTWHPRRDQAYLGVLVDDLATLGTKEPYRMFTSRAEYRLILREDNADA 446

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKT 501
           RLT  G +LG + + R + F + ++     +  L+S  +           +I  K   + 
Sbjct: 447 RLTEQGRELGLVDDHRWQVFNEKMEAIELEQQRLRSTWINPNKAFADKINAILAKPLSRE 506

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            T  + L  P+ +   L +I     K       E+++I   Y  Y  RQ  E ++    E
Sbjct: 507 HTLEDLLRRPEVTYNALMTIEELGPKLEHESAAEQVEITIKYEGYINRQKAEIEKQLRHE 566

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             L+P D DY+ +  LSNE+  KL  +KP  +  AS+I G+TPAA+++LLIY+KK  +
Sbjct: 567 NTLLPTDLDYAKIKGLSNEVIAKLVDVKPQTIGMASRISGITPAAISILLIYLKKQNL 624


>gi|121602359|ref|YP_988350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella bacilliformis KC583]
 gi|166222909|sp|A1UQU7|MNMG_BARBK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120614536|gb|ABM45137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella bacilliformis KC583]
          Length = 622

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/621 (55%), Positives = 442/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVI++GGGHAGCEAA+ +A+ GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIIVGGGHAGCEAASASARTGARTALVTYRLSDMGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGRAADFAGIQFRLLNRRKGPAVRGPRTQADRQLYKKAIQKLLREQDNLFIIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + N +S + +++   I    VVLTTGTFL G+IHIG    PAGRMG+  S  L 
Sbjct: 122 VVDIIVKNNRVSGVFLKNQGNIFSGAVVLTTGTFLNGLIHIGDKTWPAGRMGEQASVQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +    GRLKTGTPARL  KTI WD   KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKNYGISFGRLKTGTPARLSKKTIRWDVLPKQQADEDPVPFSFLTEKIKQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH II ENI  SA+YSG I+  GPRYCPSIEDKI++FGER+GHQIFLEPEGL  D
Sbjct: 242 RTNAQTHHIISENIHRSALYSGAIEGVGPRYCPSIEDKIIKFGERDGHQIFLEPEGLEDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LPE++Q   ++TI GLE VN+++PGYAIEYD+INP+ L  TLE + + GL
Sbjct: 302 VIYPNGISTSLPEDVQISLLKTIEGLENVNVLQPGYAIEYDFINPQYLSKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   LD I  SR+ +YIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLDEIILSRSTAYIGVMIDDLISRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G +  +R   +    Q  +  RS+ + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADARLTPLAQEWGIVSHKRWTCYQNKQQRLDHARSICQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY  LSYP+ ++  L    P      +  +E L+IE+ YA
Sbjct: 482 TPNEASAHGLQINNDGVRRSAYSLLSYPNMNVARLTDFWPQLHSIDAKTVESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E   IP   +  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQKQDIAALQRDESLEIPSSLNIQAIYGLSNELKTKIQKISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L++ YI++   +  ++ 
Sbjct: 602 AALSLIITYIQRQRREKGKLA 622


>gi|113476427|ref|YP_722488.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Trichodesmium erythraeum IMS101]
 gi|123056547|sp|Q110Q9|MNMG_TRIEI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110167475|gb|ABG52015.1| glucose inhibited division protein A [Trichodesmium erythraeum
           IMS101]
          Length = 637

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/620 (43%), Positives = 373/620 (60%), Gaps = 9/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 7   FQDEYDIIVVGAGHSGCEAALATARLGCHTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL V +
Sbjct: 67  VDALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYATIMRNIVENQENLRVRE 126

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      +   I  +        +C  V+LTTGTFL GVI +G   +PAGR G+  + 
Sbjct: 127 SMVTDLVLGDNEEIIGVETYFGVAFKCKAVILTTGTFLGGVIWVGNKSMPAGRAGEFSAI 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  K  F+TGRLKTGTPAR+D +++ +   E Q  DE++  F+F  +  +   Q+ 
Sbjct: 187 GLSETLNKLGFETGRLKTGTPARVDKRSVDYTDLEAQPGDEKVRWFTFDPEVWVEREQMC 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH++I +N+  S +Y G + + GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 247 CYLTRTTPETHKLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKHSHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE++Q Q ++++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 307 RDIPELYIQGFSTGLPEKLQLQMLQSLPGLENCLMLRPAYAVEYDYLPATQCYPTLMTKK 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+ +     + I F R  SYIG +IDDL +K 
Sbjct: 367 IEGLFCAGQINGTTGYEEAAAQGLVAGINAVKFVKNEEMIIFPREQSYIGTLIDDLCTKD 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F       N  +S L 
Sbjct: 427 LREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWELFESKQANINSEKSRLN 486

Query: 480 SLVLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           S  +  K L   +I+   D  T      T  + L  P F   +L            +  E
Sbjct: 487 STRI--KELDEVAINIVADTHTKIKGSITLADLLRRPGFHYVDLEKYNLGNLDLKLVEKE 544

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  +I  ++ R +P + DY S+  LS E +EKLS ++P  + Q
Sbjct: 545 GAEIDIKYSGYLQRQQNQIDQISRQKNRRLPTNLDYLSISTLSLEAREKLSKVQPLTIGQ 604

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ PA +N LL+Y++
Sbjct: 605 ASRIGGVNPADINALLVYLE 624


>gi|306832458|ref|ZP_07465610.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425358|gb|EFM28478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 634

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/630 (43%), Positives = 382/630 (60%), Gaps = 9/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           +L +      N    ++ FK      TA EF+  P+ +     S   P   K  S VIE 
Sbjct: 485 TLKIKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSFVGPAEEKLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK---KNTVKLNE 622
           S+I G+ PA +++L++Y++   K+  K+N+
Sbjct: 605 SRISGVNPADISILMVYLEGKQKHHRKVND 634


>gi|163732964|ref|ZP_02140408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter litoralis Och 149]
 gi|161393499|gb|EDQ17824.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter litoralis Och 149]
          Length = 623

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/623 (53%), Positives = 433/623 (69%), Gaps = 1/623 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M + + +DV+VIGGGHAG EAA  AA++GA T LIT   S IG MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKHFDVLVIGGGHAGTEAAHAAARMGAVTGLITMSKSGIGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y   M      Q+N+D+
Sbjct: 61  REIDALDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRAIYHHKMLEATEQQQNIDI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           + GE   F  + + ++ +V+ D S I   TV+LTTGTFLRGVIHIG +    GRMGD  S
Sbjct: 121 VIGEAVDFVMDGDRVAGVVLDDGSHILSRTVILTTGTFLRGVIHIGDVSRSGGRMGDKAS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L +    F    GRLKTGTP RL  K+I WD  E+Q  DE    FSFM+  +T RQ+ 
Sbjct: 181 VRLADRIDSFALPMGRLKTGTPPRLSSKSIRWDILEEQPGDEEPTLFSFMSKGVTARQVS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN +TH II ENI  SA+Y G I   GPRYCPSIEDKI+RF +++ HQIFLEPEG
Sbjct: 241 CGITHTNEKTHDIIRENIALSAMYGGHIDGVGPRYCPSIEDKILRFADKDSHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+TD VYPNGIST+LPEE+Q  ++ +IPGLE   I++PGYAIEYDY++P+ L  +L  + 
Sbjct: 301 LSTDAVYPNGISTSLPEEVQTAYVHSIPGLENAVILQPGYAIEYDYVDPRALDSSLSVQL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQINGTTGYEEAAAQGLVAG+N++ ++   D + FSR+DSYIGVMIDDLT++G
Sbjct: 361 VPGLYLAGQINGTTGYEEAAAQGLVAGLNASLEARDHDPVVFSRSDSYIGVMIDDLTTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+G+ LGC+ + R++ F +        R +L 
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTPLGLDLGCVSDERKRAFEEKSTALEGARRILS 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T K  +   IS  +DG  RTA + L++PD + +++  + P        V  +++ E
Sbjct: 481 GSSYTPKQAAEVGISISKDGSRRTAMQLLAFPDTTFKDIALLDPSLHSIDPEVQRQMERE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  +   +K +E   IP DFDY  L  LSNEL  KL+  +P +L Q S+I+
Sbjct: 541 ALYANYIDRQQKDVDLLKKDEAHKIPTDFDYDQLGGLSNELTAKLNQTRPTSLAQVSRID 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           GMTPAAL L+L  +++N  K + 
Sbjct: 601 GMTPAALTLILAKLRQNARKRSA 623


>gi|116496319|ref|YP_808053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus casei ATCC 334]
 gi|122262284|sp|Q033L1|MNMG_LACC3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116106469|gb|ABJ71611.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
          Length = 633

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 370/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RL P+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLKPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|322390498|ref|ZP_08064016.1| glucose inhibited division protein A [Streptococcus parasanguinis
           ATCC 903]
 gi|321142772|gb|EFX38232.1| glucose inhibited division protein A [Streptococcus parasanguinis
           ATCC 903]
          Length = 636

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVENGKVVGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|260431965|ref|ZP_05785936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415793|gb|EEX09052.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 625

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/613 (54%), Positives = 436/613 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIVIG GHAG EAA  AA++GA+TAL+T     IG MSCNPAIGGLGKGHLVREI
Sbjct: 6   HSEFDVIVIGAGHAGTEAAHAAARMGANTALVTLSERDIGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR LYR AMQ EIL+ ENL V+ G
Sbjct: 66  DALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRALYRAAMQAEILNCENLTVVPG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV  F  +   ++ +V+ D S I    V+LT+GTFLRGVIHIG ++ P GRMGD PS  L
Sbjct: 126 EVVDFRMDGPRVAGVVLADGSEIPSKAVILTSGTFLRGVIHIGDVQRPGGRMGDRPSVRL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 +D  TGRLKTGTP RLDG+TI W   E Q  D     FSF+++++   QI CGI
Sbjct: 186 AERLDSYDLPTGRLKTGTPPRLDGRTIDWTGLELQDGDSDPTLFSFLSNRVVAPQISCGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF E+  HQIFLEPEG N 
Sbjct: 246 THTNSRTHEIIEKNLSRSAMYGGHIEGIGPRYCPSIEDKIVRFAEKASHQIFLEPEGAND 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP+++Q +++RTI GLE   I++PGYAIEYDYI+P+ L  +L    + G
Sbjct: 306 HTIYPNGISTSLPQDVQVEYVRTIKGLENAEILQPGYAIEYDYIDPRVLTASLALPDVPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+A      D + F+R++SYIGVMIDDLT++GV E
Sbjct: 366 LYLAGQINGTTGYEEAAAQGLVAGLNAALAVQGRDPLHFTRSNSYIGVMIDDLTTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLTP G+++GC+GE+R+  F + +++   ++  L +  
Sbjct: 426 PYRMFTSRAEFRLSLRADNADQRLTPCGLEIGCVGEKRRIAFQEKMEKLGSVKQKLVAQT 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K + +  I   QDG  R     L++P+ + ++L  +          +  +++ ++ Y
Sbjct: 486 YTPKQIQAAGIEVNQDGNRRDGMSILAFPNVTFEDLLPLVEGLDAVEPDIRRQVERDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  + + +K +E   IP DFDYSSL  LS+E+KE+L+  +P N+ QAS+IEG+T
Sbjct: 546 ANYIARQQRDVEAMKRDESYEIPPDFDYSSLDGLSSEMKERLTQARPANIAQASRIEGIT 605

Query: 603 PAALNLLLIYIKK 615
           PAAL L+L  +++
Sbjct: 606 PAALTLVLAKLRR 618


>gi|94991466|ref|YP_599566.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10270]
 gi|166200621|sp|Q1JED6|MNMG_STRPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94544974|gb|ABF35022.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10270]
          Length = 632

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|309799044|ref|ZP_07693297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus infantis SK1302]
 gi|308117279|gb|EFO54702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus infantis SK1302]
          Length = 638

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 377/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEDYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGISHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRELVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|325122733|gb|ADY82256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 626

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQVNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTSIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNITFGQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|69247495|ref|ZP_00604365.1| Glucose-inhibited division protein A subfamily [Enterococcus
           faecium DO]
 gi|257890522|ref|ZP_05670175.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|257893098|ref|ZP_05672751.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|258615277|ref|ZP_05713047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium DO]
 gi|260558220|ref|ZP_05830416.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium C68]
 gi|293563244|ref|ZP_06677696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1162]
 gi|314948149|ref|ZP_07851545.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0082]
 gi|68194820|gb|EAN09295.1| Glucose-inhibited division protein A subfamily [Enterococcus
           faecium DO]
 gi|257826882|gb|EEV53508.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|257829477|gb|EEV56084.1| glucose-inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|260075394|gb|EEW63700.1| glucose-inhibited division protein A subfamily [Enterococcus
           faecium C68]
 gi|291604783|gb|EFF34265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1162]
 gi|313645403|gb|EFS09983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium TX0082]
          Length = 633

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/623 (42%), Positives = 375/623 (60%), Gaps = 6/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  AA++G+ T L+T     +  M CNP++GG  KG +VREIDAL
Sbjct: 9   YDVIVVGAGHAGSEAALAAARMGSKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V 
Sbjct: 69  GGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYSTEMKHTIEKEPNLTLRQGIVE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L N 
Sbjct: 129 ELIVEDGVCHGVVTSTGASYRAKAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLANH 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
             +  F   R KTGTP R+   TI +  TE+Q  D+    FSF T        Q  C +T
Sbjct: 189 LKELGFAIERFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSFSTPDSAYKLDQESCWLT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH+II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLNT+
Sbjct: 249 YTGETTHQIIRDNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLNTE 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+ST+LPE++Q   + +I GLEKV ++R GYAIEYD + P +L PTLETK +  L
Sbjct: 309 EVYVQGLSTSLPEDVQVNMLHSIAGLEKVEMMRTGYAIEYDVVEPHQLRPTLETKVVENL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  EP
Sbjct: 369 YTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKEPLVIKRSDGYIGVMIDDLVTKGTNEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT +G ++G + E + K + K  +        L ++ +
Sbjct: 429 YRLLTSRAEYRLLLRHDNADLRLTEMGHRVGLVKEDQYKNYLKKKEAVEQEIKRLMNVRI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      +I+         A +FL  P+ +   L    P+  + +   IE+++++ 
Sbjct: 489 KPTEEVQDFLATINAAPLKDGVLASDFLRRPEITYAELLRFIPENEELTRKEIEQVEVQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS+I G
Sbjct: 549 KYEGYIKKAMEKVEKLKRMEAKKIPENIDYAAINGLATEAKQKLQKIQPETIAQASRISG 608

Query: 601 MTPAALNLLLIYIKKNTV-KLNE 622
           + PA L++L++YI++  + K++E
Sbjct: 609 VNPADLSILMVYIEQGKIAKVSE 631


>gi|295425820|ref|ZP_06818501.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064513|gb|EFG55440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylolyticus DSM 11664]
          Length = 631

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/626 (41%), Positives = 365/626 (58%), Gaps = 6/626 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+G GHAGCEAA  +A +G  T ++T     +  M CNP++GG  KG +VREI
Sbjct: 6   TDEYDVIVVGAGHAGCEAALASAHMGLKTLVVTIGLDMVAFMPCNPSVGGPAKGTVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 66  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDVIENTPNLTLRQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L
Sbjct: 126 IVDQLVVKDGVCRGVITNTGAEYHAKSVVLTTGTAARGRIFIGELNYSSGPNNTIPAIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++ AD+    FS+ T        Q+ C
Sbjct: 186 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPADKIPRHFSYETSDADYLKDQVSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH+II +N+  S ++SGDI   GPRYCPSIE K+VRF ++N HQ+FLEPEG 
Sbjct: 246 WMTYTNPTTHKIIRDNLDRSPMFSGDIVGVGPRYCPSIETKVVRFADKNRHQLFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY    ST++PEE+Q + + T+ GLE   ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 HTKEVYVGDFSTSMPEEVQLKMLHTVAGLEHAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A ++         R ++YIGV+IDDL +KG 
Sbjct: 366 KNLFTAGQMNGTSGYEEAAGQGLIAGINAALRAKGKPGFTLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLTP G KLG I ++R   F +  +E    +  L +
Sbjct: 426 NEPYRLLTSRAEYRLILRHDNADLRLTPYGHKLGLISDKRYAAFEEKKKEIAAAKEKLAT 485

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       +I   +      A  FL  P   I ++  +  +       V E+++
Sbjct: 486 ITIHPTDEVQEYLQNIGEDKLSAGLKADIFLRRPRVKIDDIEKLTGEKIADDRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++ +    +  +E + IP D DY ++  L+ E ++K   ++P  L QA +
Sbjct: 546 INIKYAGYIKKEQVRIDRLHRQEAKKIPADIDYGAIEGLATEARQKFEKIRPETLAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNT-VKLNE 622
           I G+ PA L +L +YI+     K+N+
Sbjct: 606 ISGVNPADLAILSVYIQNGRYSKVNK 631


>gi|160946572|ref|ZP_02093775.1| hypothetical protein PEPMIC_00530 [Parvimonas micra ATCC 33270]
 gi|158446956|gb|EDP23951.1| hypothetical protein PEPMIC_00530 [Parvimonas micra ATCC 33270]
          Length = 628

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/623 (42%), Positives = 376/623 (60%), Gaps = 6/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  YDV+VIG GHAGCEA   +A+LG  TA++T    ++  M CNP IGG GKGHLVRE
Sbjct: 5   IDEKYDVVVIGAGHAGCEAGLASARLGLKTAILTISMDSVADMPCNPNIGGTGKGHLVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+++Y   M++ + +++N+D+IQ
Sbjct: 65  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKKMYHTEMKKVLENEKNIDLIQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV    TE N I+ ++   N +     V++ TGT+L+ +I IG+    +G      S  
Sbjct: 125 AEVKEILTENNEITGVLTTSNEIFPAKAVIICTGTYLKSMILIGENCYESGPNNWKCSTY 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S         R KTGTPAR+   +I + K + Q  D+ +IPFSFM +   I N + +
Sbjct: 185 LSDSLRNLGIPLRRFKTGTPARVHRDSIDYSKMDIQKGDDNIIPFSFMNEGKDIGNHKED 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T LET +II +N+  S +Y+G +K  GPRYCPSIEDKIVRF E++ HQ+F+EPEG
Sbjct: 245 CFLTYTTLETKKIIEQNLHRSPMYAGIVKGVGPRYCPSIEDKIVRFNEKDEHQVFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LP E+Q Q  ++I GLE V I+RP Y IEYD I+P  L  TLE K 
Sbjct: 305 LDTSEMYVQGVSSTLPLEVQKQMYKSILGLENVKIMRPAYGIEYDCIDPTILRATLEHKD 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LF AGQING++GYEEAA+QG++AGINSA      +    +R+D+YIGV+IDDL +KG
Sbjct: 365 IKNLFFAGQINGSSGYEEAASQGIIAGINSAMNILGKEPFVLTRSDAYIGVLIDDLITKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSR EYR+SLR DNAD RLT +   +G   + R ++              LK
Sbjct: 425 TDEPYRMMTSRTEYRLSLRQDNADLRLTEMSYNIGLATKERYEKCLNKKTLIENEIERLK 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S +LT K  ++ ++      K +TA   Y+ +  P+   + +  +          +  ++
Sbjct: 485 SSILTPKENTNNALEALGSMKLKTAVSLYDLIKRPELDYEIIKDLDTTREPLDREIKMQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           Q    Y  Y  +Q  + +  K  E + + ++ DY+SL  L  E  +KL+  +P  + QAS
Sbjct: 545 QTMIKYEGYIEKQSQQIEAFKKLENKKL-ENIDYNSLSGLRIEAVQKLAKFRPETVGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G++PA +N+LLI+++    K
Sbjct: 604 RISGVSPADINVLLIHLETQRRK 626


>gi|225871460|ref|YP_002747407.1| glucose inhibited division protein A [Streptococcus equi subsp.
           equi 4047]
 gi|225700864|emb|CAW95609.1| glucose inhibited division protein A [Streptococcus equi subsp.
           equi 4047]
          Length = 632

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVVGAGHAGVEASLAASRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           V++TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDDILVENGRVVGVLTATGQKYAAQAVIITTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I ++ TE Q  D     FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYEVTEIQPGDVTPNHFSFMSKDKDYLANQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQISHDIITKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 FDTEEVYVQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKM 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDDERWSAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+     + S I P A    + +IE 
Sbjct: 485 SIKLKPIKETNARVQKLGFKSLTDAMTAKEFMRRPEVDYATVVSFIGPAAEGLDAKLIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK  D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPKTIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++Y++ N
Sbjct: 605 SRISGVNPADISILMVYLEGN 625


>gi|251783536|ref|YP_002997841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242392168|dbj|BAH82627.1| putative tRNA(5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 632

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++          TVV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKTVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++Y++ N
Sbjct: 605 SRISGVNPADISILMVYLEGN 625


>gi|15902168|ref|NP_357718.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae R6]
 gi|116515312|ref|YP_815647.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pneumoniae D39]
 gi|149005876|ref|ZP_01829605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP18-BS74]
 gi|149017801|ref|ZP_01834260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP23-BS72]
 gi|73621004|sp|Q8DRH8|MNMG_STRR6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122279465|sp|Q04MU9|MNMG_STRP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15457663|gb|AAK98928.1| Glucose inhibited division protein A [Streptococcus pneumoniae R6]
 gi|116075888|gb|ABJ53608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae D39]
 gi|147762232|gb|EDK69193.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP18-BS74]
 gi|147931365|gb|EDK82343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           gidA(glucose-inhibited division protein A)
           [Streptococcus pneumoniae SP23-BS72]
          Length = 637

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/629 (41%), Positives = 375/629 (59%), Gaps = 6/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E      +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKAVGVRTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDVTEIQPGDEVPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGTSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     +++     L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFEIKKNQFDNEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EFL  P+ S Q++ + I P A +    +IE 
Sbjct: 485 SIKLKPVKETNAKVEEMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           S+I G+ PA +++L++Y++     +++ +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISKTL 633


>gi|21911374|ref|NP_665642.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS315]
 gi|28896746|ref|NP_803096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes SSI-1]
 gi|25090459|sp|Q8K5H7|MNMG_STRP3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21905590|gb|AAM80445.1| putative glucose inhibited division protein [Streptococcus pyogenes
           MGAS315]
 gi|28812000|dbj|BAC64929.1| putative glucose inhibited division protein [Streptococcus pyogenes
           SSI-1]
          Length = 632

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKSELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYAIAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|296875548|ref|ZP_06899620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433472|gb|EFH19247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis ATCC 15912]
          Length = 636

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +Q+NL + Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQDNLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVENGKVVGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNEKVATMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|325979483|ref|YP_004289199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325179411|emb|CBZ49455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 634

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/630 (43%), Positives = 381/630 (60%), Gaps = 9/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           +L +      N    ++ FK      TA EF+  P+ +     S   P   K  S VIE 
Sbjct: 485 TLKIKPVKETNARIEALGFKTLTDALTAKEFMRRPEINYDIATSFVGPAEEKLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK---KNTVKLNE 622
           S+I G+ PA +++L++Y++   K+  K N+
Sbjct: 605 SRISGVNPADISILMVYLEGKQKHHRKAND 634


>gi|239630796|ref|ZP_04673827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067923|ref|YP_003789946.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
 gi|239527079|gb|EEQ66080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300440330|gb|ADK20096.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
          Length = 633

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGQKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I +  NLD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIENTPNLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    +M R  +VVLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVENGQAVGIVAATGAMYRAKSVVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI +DKTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIEFDKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II +N+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRDNLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVDN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A ++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LFTAGQMNGTSGYEEAAGQGIMAGINAALRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I + R   F    Q      + L +  
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDERYAEFLAKRQAIETELNRLNTTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+   Q +    PD       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHYAPLKDGV--LASDFLKRPEIDYQTMAQFLPDNPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y+++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPLRINYAAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|323128288|gb|ADX25585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 632

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++Y++ N
Sbjct: 605 SRISGVNPADISILMVYLEGN 625


>gi|19747019|ref|NP_608155.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS8232]
 gi|24636866|sp|Q8NZ02|MNMG_STRP8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|19749277|gb|AAL98654.1| glucose inhibited division protein [Streptococcus pyogenes
           MGAS8232]
          Length = 632

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMSKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK      TA EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|170077730|ref|YP_001734368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7002]
 gi|205831563|sp|B1XJY4|MNMG_SYNP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169885399|gb|ACA99112.1| glucose-inhibited division protein A [Synechococcus sp. PCC 7002]
          Length = 639

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/626 (41%), Positives = 371/626 (59%), Gaps = 5/626 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIVIG GH+GCEAA  +A+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 8   FQDEFDVIVIGAGHSGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +
Sbjct: 68  VDALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKNIVENQDNLVIRE 127

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G         N  I  I     +      VVLTTGTFL G I IG   +PAGR G+  + 
Sbjct: 128 GMATDLVLGNNDEICGIQTYFGTCFGAKAVVLTTGTFLGGTIWIGNKSMPAGRAGEFAAV 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +  +  +  F+TGRLKTGTPAR+D +++ + K E Q ADE +  FSF  +  +   Q+ 
Sbjct: 188 GMTETLNELGFETGRLKTGTPARVDRRSVDYSKMEIQPADEEVRWFSFDPEAWVEREQMP 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 248 CYLTRTTPKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFIEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE +Q Q ++++PG+E   ++RP YA+EYDY+   + +PTL TK+
Sbjct: 308 RTIPELYIQGFSTGLPESLQLQMLQSLPGMEDCVMLRPAYAVEYDYLPATQCYPTLMTKR 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQG+VAGIN+A+ +   D + F R  SY+G +IDDL +K 
Sbjct: 368 VEGLFSAGQINGTTGYEEAAAQGIVAGINAAKFAQGQDMVVFPREQSYLGTLIDDLCTKD 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G IG+RR   +    +     +  L 
Sbjct: 428 LREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIGDRRWALYQTKQENIAAEKERLH 487

Query: 480 SLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +     I+    ++   + T  + L  P F   +L S        +       
Sbjct: 488 TERVKELDPLGQKIAADTGQKIKSSVTLADLLRRPKFHYADLASYGLGNEALTQAEQAGA 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  +I     R +P+  DY ++  LS E +EKL+ ++P  + QA+
Sbjct: 548 EIDIKYSGYIKRQQNQIDQISRHANRKLPEGLDYLTVETLSMEAREKLNKVRPLTIGQAT 607

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNE 622
           +I G+ PA +N LL+Y++    + N 
Sbjct: 608 RIGGVNPADINALLVYLEVQHRQKNA 633


>gi|225869457|ref|YP_002745405.1| glucose inhibited division protein A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702733|emb|CAX00877.1| glucose inhibited division protein A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 632

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 372/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVVGAGHAGVEASLAASRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           V++TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDDILVENGKVVGVLTATGQKYAAQAVIITTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  +   + GR KTGTP R+   +I ++ TE Q  D     FSFM+        QI 
Sbjct: 185 LADNLKRLGLEIGRFKTGTPPRVKASSIDYEVTEIQPGDVTPNHFSFMSKDKDYLANQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQISHDIITKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 FDTEEVYVQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKM 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRQIGLVDDERWSAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+     + S I P A +  + +IE 
Sbjct: 485 SIKLKPIKETNARVQKLGFKPLTDAMTAKEFMRRPEVDYATVVSFIGPAAEELDAKMIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK  D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPKTIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L++Y++ N
Sbjct: 605 SRISGVNPADISILMVYLEGN 625


>gi|307153017|ref|YP_003888401.1| glucose inhibited division protein A [Cyanothece sp. PCC 7822]
 gi|306983245|gb|ADN15126.1| glucose inhibited division protein A [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/618 (41%), Positives = 368/618 (59%), Gaps = 5/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+DVIV+G GH+GCEAA   A+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDSFDVIVVGAGHSGCEAALATARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNASRGPAVWALRAQTDKREYAAVMKQIVENQENLFIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    + + +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 AMATDLVLGKNDEVIGVQTYFGTCFAAKAVILTTGTFLGGRIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++  +  F+TGRLKTGTPAR+D +++ + K E Q  D+++  FSF     +   Q+ 
Sbjct: 189 GLTDTLNQLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDDKVCWFSFDPQAWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAKTHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE IQ   + T+PGLE   ++RP YA+EYDYI   + +PTL TKK
Sbjct: 309 REIPELYIQGFSTGLPENIQLAMLHTLPGLENCVMLRPAYAVEYDYIPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+A+    L  + F R +SYIG ++DDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAAQLVKGLPFVVFPREESYIGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWDLFQRKQANIIAEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +   +    +I+ K + K   + T  + L  P F   +L +        ++   E  
Sbjct: 489 ESRIKENDELGKAIAAKTEQKIKGSVTLADLLRRPGFHYADLETYGLGNLDLTTAEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + +++     R +P + DY  +  LS E +EKL+ +KP  + QAS
Sbjct: 549 EIDIKYSGYIKRQQNQIEQVSRHSNRSLPAELDYMKIDTLSMEAREKLTKVKPLTIGQAS 608

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+ PA +N LL+Y++
Sbjct: 609 RIGGVNPADINALLVYLE 626


>gi|306834572|ref|ZP_07467685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus bovis ATCC 700338]
 gi|304423374|gb|EFM26527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus bovis ATCC 700338]
          Length = 634

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/630 (42%), Positives = 380/630 (60%), Gaps = 9/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRIKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDK+VRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKVVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           +L +      N    ++ FK      TA EF+  P+ +     S   P   K  S V+E 
Sbjct: 485 TLKIKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSFVGPAEEKLDSKVVEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E  +K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEACQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK---KNTVKLNE 622
           S+I G+ PA +++L++Y++   K+  K N+
Sbjct: 605 SRISGVNPADISILMVYLEGKQKHHRKAND 634


>gi|323341064|ref|ZP_08081312.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
 gi|323091485|gb|EFZ34109.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
          Length = 635

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/624 (42%), Positives = 378/624 (60%), Gaps = 12/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA  A+++G  T LIT     +  M CNPA+GG  KG +VRE+DA
Sbjct: 11  DYDVIVVGAGHAGCEAALAASRMGNKTLLITINLEMVAFMPCNPAVGGPAKGIVVREVDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y + M+  +  + NL + QG V
Sbjct: 71  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKRQYSIEMKHTLEKEPNLTLRQGIV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  I  +V    +      VVLTTGT  RG I IG+L   +G     P+  L  
Sbjct: 131 DDLIVEEGKIKGVVTNTGACYGAKAVVLTTGTAARGKIIIGELMYSSGPNNTQPAIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  F   R KTGTP R+DG TI + KTE+Q  D     FS+ +          Q+ C
Sbjct: 191 NLERLGFKLKRFKTGTPPRVDGNTIDYAKTEEQPGDSTPHLFSYESKDEDYLDVKNQLSC 250

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH++I +N+  + +Y+G I+  GPRYCPSIE KIVRF ++  HQ+F+EPEG 
Sbjct: 251 WLTYTNEKTHKLIQDNLDRAPMYTGAIEGVGPRYCPSIETKIVRFADKARHQLFVEPEGR 310

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTD  Y  G+ST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 311 NTDEYYVQGLSTSMPEEIQLKMVHSIEGLEHAEMMRPGYAIEYDVVEPYQLRPTLETKLV 370

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQ NGT+GYEEAA QG++AGIN+ R +   + I   R+D+YIGVM+DDL +KG 
Sbjct: 371 RGLYTAGQTNGTSGYEEAAGQGILAGINAGRHALGKEEIVLKRSDAYIGVMVDDLVTKGT 430

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT +G ++G I + R ++F +  +      + L+S
Sbjct: 431 NEPYRLLTSRAEYRLILRHDNADLRLTELGHEIGLISDERYEKFLEKKKAIKEEEARLES 490

Query: 481 LVLTS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIE 534
           + +       + L        +DG    A +FL  P  +  +L    P   K     VIE
Sbjct: 491 IRIKPGKEVDEYLEKHGDRALKDGV--LASDFLRRPYVTYADLLHFIPAPEKTLDRHVIE 548

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y+ Y  ++  + +++K  E + IP+  DYS++  L+ E  +KL+ ++P  L Q
Sbjct: 549 QIEIQYKYSGYIKKEYEQIEKLKRMEAKKIPERIDYSAIEGLATEAMQKLTKIQPETLAQ 608

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA L +L +YI++  +
Sbjct: 609 ASRISGVNPADLAILAVYIEQGKI 632


>gi|299769491|ref|YP_003731517.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. DR1]
 gi|298699579|gb|ADI90144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. DR1]
          Length = 626

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTVGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFGQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|329118274|ref|ZP_08246984.1| glucose inhibited division protein A [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465695|gb|EGF11970.1| glucose inhibited division protein A [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 631

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 389/620 (62%), Gaps = 8/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YD+I++GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   HTYDIIIVGGGHAGTEAALAAARMGADTLLLTHNIETLGQMSCNPSIGGIGKGHLVREVD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 68  ALGGAMALATDLSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQPNLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +S +    N + +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VDDILLDGERVSGVKTAMNVVFKARAVVLTAGTFLAGKIHIGLENYSGGRAGDPAAQSLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI +   E+Q  D  +   S   +  +  RQ+ C I
Sbjct: 188 GCLKELNLPQGRLKTGTPPRIDGRTIDFSVLEEQPGDTPIPVMSVRGNAAMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRTGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I+G
Sbjct: 308 NECYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTING 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +     + +   R  +Y+GV++DDL +KGV E
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANAVQYVRNQEPLILRREQAYLGVLVDDLITKGVNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G K+G IG+ + + F +  +        LK+  
Sbjct: 428 PYRMFTSRAEYRLQLREDNADMRLTEDGRKIGLIGDAQWRAFNEKREAVEREIHRLKTTW 487

Query: 483 LTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERL 536
            T + LS +    +  ++  +    ++ L  P+     L ++ PDA         V E++
Sbjct: 488 YTPQKLSESEQMRVFGQKLSREANLHDLLRRPNLDYAALMTL-PDAAPLATLPENVAEQV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  E    +  E   +P + DY+ +  LS E+++KL+  KP  + QAS
Sbjct: 547 EIQVKYQGYIDRQQEEINSRRDIETLRLPAEIDYAKVKGLSAEVQQKLNAHKPETVGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPAA+ LL++++K+ 
Sbjct: 607 RISGVTPAAVALLMVHLKRG 626


>gi|260546166|ref|ZP_05821906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus NCTC 8038]
 gi|260096273|gb|EEW80149.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus NCTC 8038]
          Length = 636

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|312866771|ref|ZP_07726984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis F0405]
 gi|311097554|gb|EFQ55785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parasanguinis F0405]
          Length = 636

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/627 (41%), Positives = 378/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL + Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVENGKVIGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKQLGLEIGRFKTGTPPRVKASSINYDETEIQPGDEAPNHFSYTSRDEDYVKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGHSHEIIQNNLHRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTEEVYVQGLSTSLPEDVQRDLVHSIKGLEKAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G  +G + + R +RF     ++      L 
Sbjct: 425 TIEPYRLLTSRAEYRLILRHDNADMRLTEMGRAIGLVDDERWQRFETKKYQFENEMKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++   I P A +    +IE 
Sbjct: 485 SIKLKPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVEFIGPAAEELDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M + +++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|303230660|ref|ZP_07317410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514715|gb|EFL56707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 623

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/617 (41%), Positives = 372/617 (60%), Gaps = 4/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALACARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M+  + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKHTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNIENMAVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIKSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F            LL++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLVKDDRWDKFTAKKAAIEEGMELLRNTSVN 485

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+          AY+ +   + S   +       ++F+  V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIKTGIHAYDLVKRNELSYATVADAF-GLKRFTPDVEEAMDIAIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLI +++   
Sbjct: 605 SPADVSVLLIQLEQYNR 621


>gi|114571502|ref|YP_758182.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Maricaulis maris MCS10]
 gi|122314957|sp|Q0AKE9|MNMG_MARMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114341964|gb|ABI67244.1| glucose inhibited division protein A [Maricaulis maris MCS10]
          Length = 619

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/615 (55%), Positives = 430/615 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAGC+AAA +A+LGA T L+THK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 2   QTWDVIVIGGGHAGCDAAAASARLGARTLLLTHKLETIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVADA+GIQFR+LN  KGPAVRGPRTQ+DR LYR AMQ E+  Q NL++    
Sbjct: 62  ALDGVMGRVADASGIQFRLLNRSKGPAVRGPRTQSDRALYRTAMQSELSGQANLEIRAAA 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     E       +  D        VVLTTGTFLRG+IH G  +IPAGR G++PS  L 
Sbjct: 122 IEDLMFEGERCVGAMDADGHAYHAVAVVLTTGTFLRGLIHKGAERIPAGRAGEAPSIGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++    +   GRLKTGTPARL   TI WD  E+Q AD+  +PFSFMTD+I   QI C +T
Sbjct: 182 DTLYGLNLQMGRLKTGTPARLLKSTIDWDSLEQQAADDVPVPFSFMTDRIEVHQISCAVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH+II +N+  SA+YSG I   GPRYCPSIEDK+VRF +R+ HQIFLEPEGL+ D
Sbjct: 242 RTTEATHKIIADNLGQSAVYSGAIAGRGPRYCPSIEDKVVRFADRSQHQIFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP+++Q  F+ TIPGLE+V + R GYAIEYDY++P+EL  TL+ +K +GL
Sbjct: 302 TVYPNGISTSLPDDVQQAFLETIPGLEQVVVKRYGYAIEYDYVDPRELDATLQLRKRAGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG N+A  +   +    SR+D+YIGVMIDDL ++GV EP
Sbjct: 362 WLAGQINGTTGYEEAAAQGLVAGANAALFATGREPFVLSRSDAYIGVMIDDLITRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLTP  M+LG     R   F + ++E +  RSL  +L L
Sbjct: 422 YRMFTSRAEYRLSLRADNADQRLTPKAMELGLASRGRGAVFCRKMEELSEARSLASNLSL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +S   DGK R   E L+YPD     L  I P+  + S  V E+++I++ YA
Sbjct: 482 TPNEARDKGLSVNADGKRRAVTELLAYPDVGWDRLVGIWPELGRVSPSVSEQIEIDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    + +E   +P+D DYS +  LSNE +EKL   +P  L QA++IEG+TP
Sbjct: 542 GYIDRQQADILAFRRDEAVRLPRDLDYSGIGGLSNEAREKLERARPETLGQAARIEGVTP 601

Query: 604 AALNLLLIYIKKNTV 618
            AL  +L ++K+ T 
Sbjct: 602 GALTAVLAHVKRRTQ 616


>gi|254415371|ref|ZP_05029132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177846|gb|EDX72849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcoleus chthonoplastes PCC 7420]
          Length = 648

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 373/624 (59%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA  AA+LG  T L+T     I    CNPA+G   K  L  E
Sbjct: 9   FQDAFDVIVVGAGHSGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGAPAKSQLAHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+R + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNQSRGPAVWALRAQTDKREYAAVMKRIVENQENLVIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V        + +  +        +   V+LTTGTFL G I +G   + AGR G+  + 
Sbjct: 129 GMVTDLVLGANDQVIGVQTYFGVAFQAPAVILTTGTFLGGCIWVGNKSMSAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF  +  +   Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSKMEPQPGDEVVSWFSFDPEVWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  +TH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYITRTTAQTHQLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKQSHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + FPTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRSLPGLEHCTMLRPAYAVEYDYLPATQCFPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+ R     + + F R +SYIG +IDDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAVRYVRHQEMLVFPREESYIGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + + +        +  L+
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWQLYTEKQANIAAEKERLQ 488

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           ++ +  K      ++   D +     + T  E L  P F   NL          +    +
Sbjct: 489 TVRI--KEHEELGVAIASDTQQRIKGSITLAELLRRPKFHYTNLDHYGLGNSSLNQAERD 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  YA Y  RQ  +  ++  + +R +P D DY ++  LS E +EKLS ++P  + Q
Sbjct: 547 GAEIDIKYAGYLQRQQNQIDQVSRQSQRRLPTDLDYDAIETLSKESREKLSQVQPLTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +N LL+Y++  + 
Sbjct: 607 ASRIGGVNPADINALLVYLEVRSR 630


>gi|293609470|ref|ZP_06691772.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827922|gb|EFF86285.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 626

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQVNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDSKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTSIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNITFGQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|288906421|ref|YP_003431643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus UCN34]
 gi|288733147|emb|CBI14728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Streptococcus gallolyticus UCN34]
          Length = 634

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/630 (43%), Positives = 381/630 (60%), Gaps = 9/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDRTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRIKVSSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R +RF    ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDDERYQRFLNRKRQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           +L +      N    ++ FK      TA EF+  P+ +     S   P   K  S VIE 
Sbjct: 485 TLKIKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYDIATSFVGPAEEKLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK---KNTVKLNE 622
           S+I G+ PA +++L++Y++   K+  K N+
Sbjct: 605 SRISGVNPADISILMVYLEGKQKHHRKAND 634


>gi|62290905|ref|YP_222698.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700816|ref|YP_415390.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis biovar Abortus 2308]
 gi|189025118|ref|YP_001935886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus S19]
 gi|254707420|ref|ZP_05169248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis M163/99/10]
 gi|254709038|ref|ZP_05170849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis B2/94]
 gi|254713536|ref|ZP_05175347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M644/93/1]
 gi|254716109|ref|ZP_05177920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M13/05/1]
 gi|254731226|ref|ZP_05189804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 4 str. 292]
 gi|256030563|ref|ZP_05444177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella pinnipedialis M292/94/1]
 gi|256258447|ref|ZP_05463983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 9 str. C68]
 gi|260758958|ref|ZP_05871306.1| glucose-inhibited division protein A [Brucella abortus bv. 4 str.
           292]
 gi|260884760|ref|ZP_05896374.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus bv. 9 str. C68]
 gi|261217880|ref|ZP_05932161.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M13/05/1]
 gi|261314905|ref|ZP_05954102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M163/99/10]
 gi|261316537|ref|ZP_05955734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis B2/94]
 gi|261321270|ref|ZP_05960467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M644/93/1]
 gi|265987611|ref|ZP_06100168.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M292/94/1]
 gi|297247289|ref|ZP_06931007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 5 str. B3196]
 gi|81170531|sp|Q57AJ7|MNMG_BRUAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123547324|sp|Q2YR12|MNMG_BRUA2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62197037|gb|AAX75337.1| GidA, glucose-inhibited division protein A [Brucella abortus bv. 1
           str. 9-941]
 gi|82616917|emb|CAJ12018.1| NAD binding site:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:Glucose-inhibited division protein, A
           family:Glu [Brucella melitensis biovar Abortus 2308]
 gi|189020690|gb|ACD73412.1| glucose-inhibited division protein A [Brucella abortus S19]
 gi|260669276|gb|EEX56216.1| glucose-inhibited division protein A [Brucella abortus bv. 4 str.
           292]
 gi|260874288|gb|EEX81357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella abortus bv. 9 str. C68]
 gi|260922969|gb|EEX89537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M13/05/1]
 gi|261293960|gb|EEX97456.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M644/93/1]
 gi|261295760|gb|EEX99256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis B2/94]
 gi|261303931|gb|EEY07428.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M163/99/10]
 gi|264659808|gb|EEZ30069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella pinnipedialis M292/94/1]
 gi|297174458|gb|EFH33805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 5 str. B3196]
          Length = 636

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|332971196|gb|EGK10159.1| glucose inhibited division protein A [Desmospora sp. 8437]
          Length = 628

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/616 (43%), Positives = 383/616 (62%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  AA++G ST L+T    TI  M CNP+IGG  KGH+VRE+DA
Sbjct: 7   EFDVVVIGAGHAGCEAALAAARMGCSTLLLTLSLDTIAYMPCNPSIGGPAKGHVVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+ LY+  M++ + S+  L + Q  V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVYALRAQADKVLYQQEMKKTLESEPRLLLHQNMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ +  +     +VVLTTGT+LRG I IG L   +G     PS +L +
Sbjct: 127 ERLLVEDGVCRGVLTRTGAKYYAKSVVLTTGTYLRGKIIIGDLTYESGPNNQQPSINLAH 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   +T R KTGTP R++  T+  DK E Q  D+    FS+ T +    Q+ C +T 
Sbjct: 187 HLHELGLETVRFKTGTPPRVNKLTVDTDKMEIQPGDDEPRAFSYETTEYNTDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH  I +N+  + +YSG I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG  T  
Sbjct: 247 TNEKTHEFIRDNLHRAPMYSGVIEGQGPRYCPSIEDKIVRFADKSRHQIFLEPEGRETLE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPEEIQ   +RTI GLE V ++R GYAIEYD I P +L+P+LETK+++ LF
Sbjct: 307 MYVQGLSTSLPEEIQQPLLRTIDGLENVEMMRTGYAIEYDAIIPTQLWPSLETKRVANLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+ARK    + +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGIMAGINAARKVRGEEPVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF K  +        L+  +L 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTDLGYEVGLIPEERYRRFRKKREAIEGEIQRLRETILK 486

Query: 485 SKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                   +      +   A    + +  P+  I+++  + P     +  V E+++I+  
Sbjct: 487 PTPEVQALLRKVGSSELDHAVELSKLIKRPEVKIEHIHQLSPPEEPVTPEVAEQVEIQLK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  + + + ++++  E + IP   DY  +  +S+E KEKL+ ++P +L QAS+I G+
Sbjct: 547 YEGYIKKSLQQVEKMRKMENKRIPDWVDYDQVKGISSEAKEKLNQVRPLSLGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNT 617
            P+ +++LLI++++  
Sbjct: 607 NPSDISILLIHLEQGR 622


>gi|254694683|ref|ZP_05156511.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 3 str. Tulya]
 gi|261215011|ref|ZP_05929292.1| glucose-inhibited division protein A [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916618|gb|EEX83479.1| glucose-inhibited division protein A [Brucella abortus bv. 3 str.
           Tulya]
          Length = 636

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYCDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|306842824|ref|ZP_07475464.1| glucose-inhibited division protein A [Brucella sp. BO2]
 gi|306287018|gb|EFM58529.1| glucose-inhibited division protein A [Brucella sp. BO2]
          Length = 642

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/610 (58%), Positives = 456/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 15  FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 75  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 135 DLVCDGERISGVTLGDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  IPFS MTD+IT  QIECGITRT
Sbjct: 195 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPIPFSLMTDRITTPQIECGITRT 254

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 255 TPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 314

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 315 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 374

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 375 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 434

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 435 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSITP 494

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
               +  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 495 NLAGNYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 554

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 555 MERQQSDIAVMEREERLLIPLGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 614

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 615 VALLIAQIRK 624


>gi|319406397|emb|CBI80038.1| glucose inhibited division protein A [Bartonella sp. AR 15-3]
          Length = 622

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/621 (55%), Positives = 446/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ ST+G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARVGARTALVTYQVSTLGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN +KGPAVRGPRTQADRELY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQADRELYKNKIQQLLQKQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + IS + ++    I  + VVLTTGTFLRG+IHIG    PAGRMG+  S  L 
Sbjct: 122 VIDLIVKDDHISGVFLKKKGKILSNAVVLTTGTFLRGLIHIGNKIWPAGRMGERASIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +     RLKTGTPARL  KTI W+K  KQ ADE  IPFS +T+KI   QIEC IT
Sbjct: 182 EHLENYGVHLRRLKTGTPARLSKKTISWNKLPKQQADEEPIPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+ D
Sbjct: 242 RTNEKTHQIIRENIHKSALYSGAIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLDND 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPEEIQ  F+RTI GLE V I++PGYAIEYD+++P++L  TLE K + GL
Sbjct: 302 TIYPNGISTSLPEEIQFSFLRTIEGLENVEILQPGYAIEYDFVDPRQLSKTLELKSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   L+ I  SR+ +YIGVMIDDL S+G+ EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLEEIILSRSTAYIGVMIDDLVSRGICEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  K G + + R  R+ +  Q  +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADTRLTPLAQKWGIVSQIRWIRYQQKQQLLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S   +    DG  R+AY+ L+ P  S+  L    P  R   +   E L+IE+ YA
Sbjct: 482 TPNEASIHGLQINHDGIRRSAYDLLARPHMSVARLAHFWPQLRSIDAKTAEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E+  IP   ++  +  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLERQTQDIIALQRDERLEIPSSLNFQEISGLSNELKAKIQQISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L+L YI++   +  ++ 
Sbjct: 602 AALSLILTYIQRQRREKAKLA 622


>gi|304439122|ref|ZP_07399041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372481|gb|EFM26068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 633

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/626 (42%), Positives = 387/626 (61%), Gaps = 5/626 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+G GHAG E+A  AA++G  T L+T    +I +MSCNP +GG GKGHLVRE
Sbjct: 8   IGGEYDVIVVGAGHAGTESALAAARMGRKTLLLTMNLDSIVAMSCNPNVGGTGKGHLVRE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D   IQ R+LN+ KGPAV   R QAD+  Y   M++ I   ENLD+ Q
Sbjct: 68  IDALGGEMARNIDRTFIQSRMLNLSKGPAVHSLRAQADKRRYHDEMKKVIEKTENLDLRQ 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +  ++ +  ++ +  +VV+ TGT+LRG I +G++   +G  G  PS  
Sbjct: 128 SEVVKILLEDSKVVGVLTKTGAIYKAKSVVVATGTYLRGRIFMGEVNYSSGPDGMKPSLD 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L  S      +  R+KTGTPAR+   TI + K E Q  DER++PFSF      ++  Q+ 
Sbjct: 188 LSESLKDMGLELIRMKTGTPARMLRSTIDFSKMEVQPGDERVVPFSFDNIDKDMSKDQVN 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  + H II ENI  SA+Y GDI+  GPRYCPSIEDK++RF +R  HQ+F+EPEG
Sbjct: 248 CYLTYTTEKCHDIIRENIMRSAMYLGDIEGTGPRYCPSIEDKVMRFKDRTSHQVFIEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y  G+S++LPEE+Q    + I GLE   I+R  YAIEYD I+   +  +LE   
Sbjct: 308 LSTEEMYIQGVSSSLPEEVQIDIYKNIIGLENAKIMRSAYAIEYDAIDATVIDRSLEHMD 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQING++GYEEAAAQGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG
Sbjct: 368 ISGLFFAGQINGSSGYEEAAAQGLMAGINAALKVEGKEPLILERSDAYIGVLIDDLVTKG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM T+RAEYR++LR DNAD RLT +G  +G + + + +R+    +        +K
Sbjct: 428 TREPYRMMTARAEYRLTLRQDNADMRLTQMGYDIGLVTKEKYERYLYRKENIEKELKRIK 487

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      N     +       T++  E +  P+     +  + P   +    +IE++
Sbjct: 488 KIKINPTAENNEILERLGTTPIKNTQSLEELIRRPELGYDAVKELDPQRPELRRDIIEQV 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  +Q I+  + K  EKR + KD +Y  +  L NE +EKL+ ++P ++ QA+
Sbjct: 548 EIEIKYSGYIKKQNIQISQFKKLEKRYLEKDLNYEEVQGLRNEAREKLTKIRPESIGQAA 607

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNE 622
           +I G++PA +N+LLIY+++   + N+
Sbjct: 608 RITGVSPADINVLLIYLERKRREKND 633


>gi|50915202|ref|YP_061174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus pyogenes MGAS10394]
 gi|68052091|sp|Q5X9C2|MNMG_STRP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50904276|gb|AAT87991.1| Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Streptococcus pyogenes MGAS10394]
          Length = 632

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKSELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWKAFEIKKNQFDNELKRLN 484

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L     ++     + FK       A EF+  P+       S   P A    + +IE 
Sbjct: 485 SIKLKPVKATNDRVQELGFKPLTDAMIAKEFMRRPEIDYATAVSFVGPAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|225853492|ref|YP_002733725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis ATCC 23457]
 gi|256263028|ref|ZP_05465560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 2 str. 63/9]
 gi|225641857|gb|ACO01771.1| glucose-inhibited division protein A [Brucella melitensis ATCC
           23457]
 gi|263092901|gb|EEZ17076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 2 str. 63/9]
          Length = 636

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|254690193|ref|ZP_05153447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 6 str. 870]
 gi|260755734|ref|ZP_05868082.1| glucose-inhibited division protein A [Brucella abortus bv. 6 str.
           870]
 gi|260675842|gb|EEX62663.1| glucose-inhibited division protein A [Brucella abortus bv. 6 str.
           870]
          Length = 636

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQRSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|16331425|ref|NP_442153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechocystis sp. PCC 6803]
 gi|2494736|sp|Q55694|MNMG_SYNY3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1001595|dbj|BAA10223.1| glucose inhibited division protein A [Synechocystis sp. PCC 6803]
          Length = 635

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 369/623 (59%), Gaps = 5/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDQFDVIVVGAGHAGCEAALATARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN+ +GPAV   R Q D+  Y   M+  + +Q NL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNISRGPAVWALRAQTDKREYAAVMKNIVENQPNLSIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      + + I  +     +     +VV+TTGTFL G I IG   +PAGR G+  + 
Sbjct: 129 GMVTDLVLGDNDEIQGVQTYFGACFGAQSVVITTGTFLGGKIWIGNKSMPAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ +DK E Q  DE++  FSF  +  +   Q+ 
Sbjct: 189 GLTETLNELGFETGRLKTGTPARVDRRSVDYDKLEPQPPDEQVSWFSFDPEVWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYD++   + +P+L TKK
Sbjct: 309 RDIPELYIQGFSTGLPENVQLAMLQTLPGLENCVMLRPAYAVEYDFLPATQCYPSLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GLF AGQINGTTGYEEAAAQGLVAGIN+AR       I FSR  SY+G +IDDL +K 
Sbjct: 369 VAGLFCAGQINGTTGYEEAAAQGLVAGINAARHCQGKSLIIFSREGSYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR   F          +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWDLFQTKQANITAEKERLY 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  +  ++     I   + ++   +    E L  P F   +L        +        +
Sbjct: 489 STRIKEQDAVGKEIVDYTQQKIKGSIVLAELLRRPGFHYPDLEKFQLGNEELKPEEKTSV 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQ  + +++    ++ +P   +Y ++  LS E +EKL+  +P  + QA 
Sbjct: 549 EIEIKYSGYIKRQQTQIEQVSRHSQKRLPPGLNYMAIETLSMEAREKLTQFQPLTIGQAG 608

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +N LL+Y++    +
Sbjct: 609 RIGGVNPADINALLVYLETQLRR 631


>gi|23502909|ref|NP_699036.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis 1330]
 gi|161619975|ref|YP_001593862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella canis ATCC 23365]
 gi|38257630|sp|Q8FY28|MNMG_BRUSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039331|sp|A9M9E4|MNMG_BRUC2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|23348940|gb|AAN30951.1| glucose-inhibited division protein A [Brucella suis 1330]
 gi|161336786|gb|ABX63091.1| glucose-inhibited division protein A [Brucella canis ATCC 23365]
          Length = 636

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|312279314|gb|ADQ63971.1| Putative tRNA(5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Streptococcus thermophilus ND03]
          Length = 633

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/630 (42%), Positives = 380/630 (60%), Gaps = 10/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 125 SMVDEILVEDSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + I +I GLEK  +IR GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMIRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL----- 474
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++       
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFKIKKNQFDRELTRLS 484

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVI 533
           +  LK +  T++ + +  + FK      TA EF+  P+           P A    + VI
Sbjct: 485 KEKLKPIKETNEKIQA--LGFKPLTDAMTAKEFMRRPEIDYATATQFVGPAAEDLDAKVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E L+ E  Y  Y  + + +  ++K  E++ IP++ D+ ++ +++ E ++K   + P  + 
Sbjct: 543 ELLETEIKYEGYINKALDQVAKMKRMEEKKIPENIDWDAIDSIATEARQKFKKINPETIG 602

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           QAS+I G+ PA +++L++Y++ N     ++
Sbjct: 603 QASRISGVNPADISILMVYLEGNNKARRKV 632


>gi|254696310|ref|ZP_05158138.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760681|ref|ZP_05873024.1| glucose-inhibited division protein A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260671113|gb|EEX57934.1| glucose-inhibited division protein A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 636

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ Y+ Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYSVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|241668754|ref|ZP_04756332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877285|ref|ZP_05249995.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843306|gb|EET21720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 627

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/621 (48%), Positives = 403/621 (64%), Gaps = 6/621 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + N +YDVIV+GGGHAG EAAA +A++GA T L+TH   TIG MSCNPAIGG+GKGHLV+
Sbjct: 2   IYNNTYDVIVVGGGHAGVEAAAASARIGAKTLLLTHNIDTIGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G+M +  D AGIQFR+LN +KGPAVR  R QADR LY+ A+   +  Q+NLD+ 
Sbjct: 62  EIDAMGGIMAKAIDMAGIQFRILNSRKGPAVRATRAQADRVLYKKAINSLLNDQQNLDIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   + +     +   VVLT GTFL G IHIG++    GR GD PSN
Sbjct: 122 QDSVDDLVVENDTVCGAITKTGITFKSKKVVLTVGTFLGGKIHIGQVSKEGGRAGDQPSN 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQI 238
           +L        F   RLKTGTP R+D +++ +   + Q  D     FSF +       RQI
Sbjct: 182 ALAARLRALPFRVDRLKTGTPPRIDSRSVDFSVMDVQHGDTPTPFFSFFSKGKIEHPRQI 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH II  N+  SA+YSG I+  GPRYCPSIEDK+VRF E++ HQIF+EPE
Sbjct: 242 PCYITYTNSKTHEIITNNLDKSAMYSGLIEGIGPRYCPSIEDKVVRFAEKDRHQIFVEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GLN+  +YPNG+ST+LP E+Q ++IR+I G E   IIRPGYAIEYD+ +P++L PTLETK
Sbjct: 302 GLNSIELYPNGLSTSLPFEVQCEYIRSIKGFENAFIIRPGYAIEYDFFDPRDLKPTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  LF AGQINGTTGYEEA AQGLVAGIN+A   +       +R++SY+GV+IDDL +K
Sbjct: 362 HIKNLFFAGQINGTTGYEEAGAQGLVAGINAAISIDSDKSWYPTRSNSYMGVLIDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RL+    ++G + ++ Q+ F       +   +++
Sbjct: 422 GTKEPYRMFTSRAEYRLILREDNADLRLSDKACEIGLLNKQDQEFFINKKTAIDENIAMM 481

Query: 479 KSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIE 534
           K+  +  +   +  +     K+  +  T ++ L  P+   + L  I     K     VIE
Sbjct: 482 KNTWIGPQTQKARELEKFLDKKMTRESTLFDLLKRPELDYKKLQQIPDTNLKLEDESVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + Y+ Y  RQ  +  +I   E + IP+ FDYS +  LSNE+ +KLS  KP  L +
Sbjct: 542 QIEISAKYSGYIERQSKDIAKILTLESKTIPESFDYSQVKGLSNEVLQKLSEQKPTTLGE 601

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+TPAA++LL IY+KK
Sbjct: 602 ASRIPGVTPAAVSLLTIYMKK 622


>gi|262372168|ref|ZP_06065447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter junii SH205]
 gi|262312193|gb|EEY93278.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter junii SH205]
          Length = 626

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 387/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NL + Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRHTLENQANLVIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 305 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTPIG +LG + + R   +++ ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  ++P  L QAS+I 
Sbjct: 543 VKYEGYINRQHDDVAQMKRLEETKIPADFEYDGVSGLSREITQKLKTVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|322391190|ref|ZP_08064662.1| glucose inhibited division protein A [Streptococcus peroris ATCC
           700780]
 gi|321145943|gb|EFX41332.1| glucose inhibited division protein A [Streptococcus peroris ATCC
           700780]
          Length = 638

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 375/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ + +QENL   Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLTFRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVFGVRTATHQEYGAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLASVN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE    FS+ +  +     Q+ 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDETPNHFSYTSRDEDYLKDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + +++G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGHSHEIIQNNLYRAPMFTGVVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQRDLVHSIKGLENAEMMRTGYAIEYDMVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF     ++      L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWTRFEIKKNQFENEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EFL  P+ S Q++ + I P A      +IE 
Sbjct: 485 SIKLKPVKETNEKVAAMGFKPLTDAVTAKEFLRRPEVSYQDVVAFIGPAAEDLDDKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + M +  ++K  E++ IP + D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEIKYEGYISKAMDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKLINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++     +++
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSISK 631


>gi|237816410|ref|ZP_04595403.1| glucose-inhibited division protein A [Brucella abortus str. 2308 A]
 gi|237788477|gb|EEP62692.1| glucose-inhibited division protein A [Brucella abortus str. 2308 A]
          Length = 658

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 31  FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 91  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 150

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 151 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 210

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 211 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 270

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 271 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 330

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 331 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 390

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 391 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 450

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 451 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 510

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 511 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 570

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 571 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 630

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 631 VALLIAQIRK 640


>gi|326410056|gb|ADZ67121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis M28]
 gi|326539773|gb|ADZ87988.1| glucose-inhibited division protein A [Brucella melitensis M5-90]
          Length = 634

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 7   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 67  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 127 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 187 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 247 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 307 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 367 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 427 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 486

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 487 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 546

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPAA
Sbjct: 547 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPAA 606

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 607 VALLIAQIRK 616


>gi|325567649|ref|ZP_08144316.1| glucose inhibited division protein A [Enterococcus casseliflavus
           ATCC 12755]
 gi|325159082|gb|EGC71228.1| glucose inhibited division protein A [Enterococcus casseliflavus
           ATCC 12755]
          Length = 640

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/622 (41%), Positives = 374/622 (60%), Gaps = 9/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREID
Sbjct: 17  ESYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG 
Sbjct: 77  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGI 136

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 137 VEKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLA 196

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           +   +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T  +     Q  C 
Sbjct: 197 DHLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCW 256

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLN
Sbjct: 257 LTYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLN 316

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I 
Sbjct: 317 TEEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIE 376

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  
Sbjct: 377 NLFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTN 436

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + +    +        L  +
Sbjct: 437 EPYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPEAQYEAYVAKKEAVEAEIKRLSKI 496

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         L++   +  +DG    A EFL  P+ +   +              IE++
Sbjct: 497 RIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIEQV 554

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS
Sbjct: 555 EIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQAS 614

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++L++YI++  +
Sbjct: 615 RISGVNPADISILMVYIEQGKI 636


>gi|257875885|ref|ZP_05655538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC20]
 gi|257810051|gb|EEV38871.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC20]
          Length = 630

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/622 (41%), Positives = 374/622 (60%), Gaps = 9/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           +   +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T  +     Q  C 
Sbjct: 187 DHLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLN
Sbjct: 247 LTYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  
Sbjct: 367 NLFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + +    +        L  +
Sbjct: 427 EPYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPEAQYEAYVAKKEAVEAEIKRLSKI 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         L++   +  +DG    A EFL  P+ +   +              IE++
Sbjct: 487 RIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS
Sbjct: 545 EIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++L++YI++  +
Sbjct: 605 RISGVNPADISILMVYIEQGKI 626


>gi|168187284|ref|ZP_02621919.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
 gi|169294820|gb|EDS76953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
          Length = 632

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/617 (42%), Positives = 384/617 (62%), Gaps = 3/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV VIG GHAGCEAA  +A++G ST +     +++  M CNP IGG  KGHLVREIDA
Sbjct: 7   EFDVAVIGAGHAGCEAALASARIGVSTVVFATDLASVAMMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENL++ Q E+
Sbjct: 67  LGGEMGINIDHTYIQSRMLNTSKGPAVHSLRAQADKGKYAERMKHVLETTENLNLKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E   +  ++ ++ +  +    +L TG +L+  I IG +    G  G +P+N L  
Sbjct: 127 IKVDIEDGNVKGVLTKNGAYYKVKAAILCTGVYLKSRIIIGDINYEGGPSGLAPANMLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +       R KTGTPAR++ +T+ + K  +Q  D+ ++PFSFM++ I   QI C +T 
Sbjct: 187 SLIDSGIKITRFKTGTPARINRRTVDFSKMIEQKGDDNIVPFSFMSENIEREQISCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ET ++++ENI  S +Y+G IKS GPRYCPS EDKI+RF E++ HQIF+EPEG NT+ 
Sbjct: 247 SGDETKKVVLENIDRSPLYNGSIKSVGPRYCPSFEDKIMRFPEKDKHQIFIEPEGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q + +R++PGLE   ++R  YAIEYD I+P +L  +LE K I+GLF
Sbjct: 307 MYVGGMSSSLPEDVQIKMLRSVPGLENAEMMRTAYAIEYDCIDPTQLKISLEFKNINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEA  QGL+AGIN+A K    + +   R+D+YIGV+IDDL +KG  EPY
Sbjct: 367 SAGQMNGSSGYEEAGCQGLIAGINAALKLQGKEPLVLKRSDAYIGVLIDDLVTKGTHEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G  +G + E R  +F K  +        LK++ +T
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTEMGYNIGLVKEDRYIKFIKRKKAIEDEIERLKNIQIT 486

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +     ++     K  + YE +  P+ +   +  +  D  +    V E++ I S 
Sbjct: 487 NKQEVNKFLEGLNSAGLKKPISLYELIKRPELNYFVVKDLDKDREELPRDVQEQVNIISK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  E RLIPK+FDY  +  L  E  +KL  +KP N+ QAS+I G+
Sbjct: 547 YEGYIQKQLEQVEQFKKLENRLIPKEFDYKLVKGLRTEAIQKLDKIKPVNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LLI +++   
Sbjct: 607 SPADISVLLIVLEQYNR 623


>gi|119489483|ref|ZP_01622244.1| glucose-inhibited division protein A [Lyngbya sp. PCC 8106]
 gi|119454562|gb|EAW35709.1| glucose-inhibited division protein A [Lyngbya sp. PCC 8106]
          Length = 638

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 378/625 (60%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D++V+GGGH+GCEAA  +A+LG  T ++T     I    CNPA+G   K  L  E
Sbjct: 9   FQDEFDIVVVGGGHSGCEAALASARLGCRTLMLTLNLDKIAWQPCNPAVGAPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   MQ  I +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMQNIIENQENLAIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      E + I  +    +   +C  V+LTTGTFL GVI +G   + AGR G+  + 
Sbjct: 129 GMVTDVVLGENDEIIGVKTYFDVAFKCKAVILTTGTFLGGVIWVGNKSMSAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++  K  F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF  +  +   Q+ 
Sbjct: 189 GLTDTLNKLGFETGRLKTGTPARVDKRSVNYSQLEPQPGDEEVRWFSFDPEVWVEREQMC 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHRII EN+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAETHRIIRENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            N   +Y  G ST LPE +Q Q +R++PGLEK  ++RP YA+EYDY+   + +PTL TK+
Sbjct: 309 RNIPELYIQGFSTGLPERLQLQMLRSLPGLEKCTMLRPAYAVEYDYLPATQCYPTLMTKR 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+AR S   + I F R  SY+G +IDDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAARFSRNQEMIIFPREGSYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F          +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWQLFEHKQANIIAEKERLH 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  +  ++    +I   + ++   + T  + L  P F   NL           S+  E  
Sbjct: 489 STRIKERDEVGMAIVSDTQQKIKGSITLADLLRRPGFHYVNLERYNLGNPDIDSVEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQ  +  +I     R +P++ +Y  +  LS E +EKL+ ++P  + QAS
Sbjct: 549 EIEVKYSGYLQRQQNQIDQISRHANRKLPENINYMMIETLSMESREKLTKVRPLTIGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G+ PA +N LLIY++    +  
Sbjct: 609 RIGGVNPADVNALLIYLEIQNRQQT 633


>gi|332531223|ref|ZP_08407136.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hylemonella gracilis ATCC 19624]
 gi|332039330|gb|EGI75743.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hylemonella gracilis ATCC 19624]
          Length = 679

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/669 (43%), Positives = 384/669 (57%), Gaps = 50/669 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    ++VIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPEEFEVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q NL + 
Sbjct: 62  EVDALGGAMAIATDEAGIQFRILNASKGPAVRATRAQADRILYKAAIRRRLENQPNLMLF 121

Query: 121 QGEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           Q  V     E +     +   V Q     R  TVVLT GTFL G IHIG     AGR GD
Sbjct: 122 QQAVDDLLVEGDGDGARVVGAVTQAGIAFRGRTVVLTAGTFLDGKIHIGLDNYAAGRAGD 181

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL------------I 224
            P+ SL     +     GRLKTGTP RLDG+TI + +  +Q  D                
Sbjct: 182 PPAVSLSARLKELQLPQGRLKTGTPPRLDGRTIDFSQCTEQPGDGMPGAASQGANEGEIP 241

Query: 225 PFSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
            FSFM   ++  RQ+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI 
Sbjct: 242 VFSFMGLREMHPRQMPCWITHTNERTHEIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKIN 301

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF  ++ HQIFLEPEGL T+  YPNGIST+LP +IQ   +R++ GLE   I+RPGYAIEY
Sbjct: 302 RFAGKDSHQIFLEPEGLTTNEYYPNGISTSLPFDIQLALVRSMRGLENAQILRPGYAIEY 361

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY +P+ L  + ET++I GLF AGQINGTTGYEEAAAQGL AGIN+A +          R
Sbjct: 362 DYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLFAGINAALQCRGEAAWLPGR 421

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             +Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT IG +LG + + R + 
Sbjct: 422 DQAYLGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADMRLTEIGRRLGLVDDARWEA 481

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
           F +     +     LKS  +  + L    +  +           ++ L  P      L S
Sbjct: 482 FNRKRDAVSRETERLKSTWVNPRILPAAEAERVLGVGIEHEYHLFDLLRRPGVKYAELMS 541

Query: 521 ICPD------------------------------ARKFSSLVIERLQIESSYAAYTGRQM 550
           +                                        V+++++I + YA Y  RQ 
Sbjct: 542 MDGGKYASPASAARNELPVAGAAAVTLTGVSRETLGDLYEPVVDQIEIAAKYAGYIDRQR 601

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
            E +     E+  +P D DY S+ ALS E ++KL   +P  L QAS+I G+TPA ++LLL
Sbjct: 602 DEVERAAHYEQLQLPADLDYMSVSALSIEARQKLQKHRPETLGQASRISGITPATISLLL 661

Query: 611 IYIKKNTVK 619
           I+++K+  K
Sbjct: 662 IHLRKSGFK 670


>gi|225016767|ref|ZP_03705959.1| hypothetical protein CLOSTMETH_00679 [Clostridium methylpentosum
           DSM 5476]
 gi|224950435|gb|EEG31644.1| hypothetical protein CLOSTMETH_00679 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/614 (43%), Positives = 385/614 (62%), Gaps = 4/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA  +A+LG  TAL T     I +M CNP+IGG  KGHLVREIDAL
Sbjct: 8   YDVIVVGAGHAGVEAALASARLGMRTALFTISLDQISNMPCNPSIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  +Q R+LN  KGPAV   R QADR  Y   M++ + +Q+NLD+ QGEV 
Sbjct: 68  GGEMGKAADATFLQSRMLNRGKGPAVHSLRVQADRMKYHALMKQTVEAQDNLDLRQGEVV 127

Query: 126 GF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++S+V +  ++     V+L  GT+L G IH+G+     G  G   + +L  
Sbjct: 128 DVRLDENNNVTSVVTKLGAVFEAKAVILACGTYLNGTIHVGEASYTGGPDGALAATTLTY 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K      R KTGTPAR+  ++I +   E+Q  D+ ++PFSF T      Q++C I  
Sbjct: 188 NLEKLGVKLRRFKTGTPARVHRRSIDFSVLEEQCGDDPIVPFSFETTGKLENQVKCYIAY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETHR+I EN+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ+F+EP GL+TD 
Sbjct: 248 TNEETHRVIRENLHRSPLYAGRIEGVGPRYCPSIEDKVVRFPDKLRHQLFVEPMGLDTDE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q QF+RTI GLE+V I+R  YAIEYD  +P +L PTLE  +I GL+
Sbjct: 308 IYLQGMSSSLPEDVQIQFLRTIRGLERVEIMRTAYAIEYDCCDPLQLLPTLELIQIGGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K    +     R  SYIG +IDDL +KG  +PY
Sbjct: 368 GAGQFNGTSGYEEAAAQGLIAGINAALKIQGKEPFVLDRASSYIGTLIDDLVTKGCSDPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLTP+G +LG I E+R ++F   ++     +  ++   + 
Sbjct: 428 RMMTSRSEYRLILRQDNADQRLTPLGYQLGLISEQRYQQFLNKLELIQQEKKRIRKANIG 487

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                +  +  +      T     + +  P     +L     +       V E+++IE  
Sbjct: 488 PSEQLNEFLVSRGTSPLTTGTKLADLIRRPQIRYIDLAPFDGERPPLPFEVAEQVEIELK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ+++ +E++  E++ +    DY+++  L  E +EKL+ +KP ++ QAS+I G+
Sbjct: 548 YEGYIKRQLMQVEEMRKLEQKPLSAALDYTTIEGLRLEAQEKLNKVKPLSIGQASRISGV 607

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLI++++
Sbjct: 608 SPADVSVLLIWLEQ 621


>gi|331002966|ref|ZP_08326478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413010|gb|EGG92385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 628

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/624 (41%), Positives = 376/624 (60%), Gaps = 5/624 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YD++V+G GHAGCEAA V A+LG  T + T    +I  M CNP IGG  KGHLV+E+
Sbjct: 4   KKIYDIVVVGAGHAGCEAALVGARLGLKTVIFTVSVDSIALMPCNPNIGGSSKGHLVKEL 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M++ + +  NL + Q 
Sbjct: 64  DALGGEMGKCIDKTFIQSKMLNASKGPAVHSLRAQADKQEYSKEMRKTLENTPNLSICQK 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E+     E NI   +     S      V+L TGT+L      G++    G  G   +N L
Sbjct: 124 EITKLIIEDNICKGVETISGSKYYAKAVILATGTYLNARCIYGEVAEYTGPNGLKSANHL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
            +S +++  D  R KTGTPAR+DG+TI ++  E+Q+ D  ++PFSF TD   I   Q++C
Sbjct: 184 TSSLIEYGIDLNRFKTGTPARVDGRTINYEVMEEQYGDNPVVPFSFETDPESIQKEQVKC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  T+ +TH II +NI  S ++SG IK  GPRYCPSIEDK+V+F +++ HQIF+EPEG 
Sbjct: 244 YLAYTSEKTHEIIRKNIDRSPLFSGAIKGTGPRYCPSIEDKVVKFPDKDRHQIFVEPEGF 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y +G+S++LPE++Q + IR+I G E V I+R GYAIEYD I+ ++L  +LE + I
Sbjct: 304 YTNEMYLSGLSSSLPEDVQDEMIRSIEGFENVEIVRNGYAIEYDCIDARQLKDSLEFRAI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ NG++GYEEAA QGL+AGIN++ K    D +   R   YIGV+IDDL +K  
Sbjct: 364 EGLFAAGQFNGSSGYEEAAVQGLMAGINASMKILGRDPVVIGRDQGYIGVLIDDLVTKES 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLT +G  +G I E R +R  +  ++     + LK+
Sbjct: 424 HEPYRMMTSRSEYRLLLRQDNADIRLTKLGYDIGLISEERYQRLLEKEKQIEEEINRLKN 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEF---LSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + + +       +        +T+      +  P+ +      I  + ++    V +++ 
Sbjct: 484 IHIGANLKVQEFLVKNGSTPLQTSANLAEVIRRPELNYDLTKEIDDNRKELRKEVRDQVN 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  + K+ K  E + IP D DYS + +L  E  +KLS +KP ++ QAS+
Sbjct: 544 INIKYEGYIKRQESQVKQFKKLENKKIPADIDYSKVNSLRIEAVQKLSKVKPSSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G++PA + +LL+Y++    K N
Sbjct: 604 ISGVSPADITVLLVYLETYKEKKN 627


>gi|319899517|ref|YP_004159614.1| glucose inhibited division protein A [Bartonella clarridgeiae 73]
 gi|319403485|emb|CBI77065.1| glucose inhibited division protein A [Bartonella clarridgeiae 73]
          Length = 622

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/621 (54%), Positives = 439/621 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDVIVIGGGHAGCEAA+ +A++GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QSYDVIVIGGGHAGCEAASASARIGAQTALVTYQISKLGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+ ADAAGIQFR+LN +KGPAVRGPRTQ DR+LY+  +Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQVDRQLYKNKIQQLLQKQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +S   ++    I  + VVLTTGTFLRG+IHIG     AGRMG+  S  L 
Sbjct: 122 VIDLIIKDGRVSGAFLKKQGNIYSNAVVLTTGTFLRGLIHIGNKTWSAGRMGEQSSIQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPAR   KTI W+K  KQ ADE  +PFS +T+KI   QIEC IT
Sbjct: 182 ERLKNYGINLGRLKTGTPARFSKKTISWNKLLKQQADEDPVPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL+ D
Sbjct: 242 RTNKKTHQIIRENIHKSALYSGVIEGLGPRYCPSIEDKIIKFGDRDGHQIFLEPEGLDND 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE+IQ  F+RTI GLE V I++PGYAIEYD+++P++L   LE + + GL
Sbjct: 302 TIYPNGISTSLPEDIQISFLRTIEGLENVEILQPGYAIEYDFVDPRQLSRNLELRFLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   L+ I  SR+ +YIGVMIDDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLEEIILSRSTAYIGVMIDDLISRGVREP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G I + R   + +  Q  +  R + + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADARLTPLAKQWGIISQTRWVCYQQKQQRLDQARLMCQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S   +    DG  R+AY+ L+ P  S+  L    P      S  +E L+IE+ YA
Sbjct: 482 TPNEASVHGLQINNDGIRRSAYDLLARPHMSVARLAHFWPQLHSIDSKTVEALEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E+  IP   ++  +  LSNELK K   + P ++  A KI+GMTP
Sbjct: 542 VYLERQAQDIMALQRDERLEIPSSLNFQEISGLSNELKAKFQQISPRSIADAKKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L+L YI++   K  ++ 
Sbjct: 602 AALSLILTYIQRQRHKKAKLA 622


>gi|260584385|ref|ZP_05852132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulicatella elegans ATCC 700633]
 gi|260157903|gb|EEW92972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulicatella elegans ATCC 700633]
          Length = 632

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/626 (42%), Positives = 373/626 (59%), Gaps = 10/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  +A++GA T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 9   NYDVIVVGAGHAGSEAALASARMGAKTLLLTMNLEMVAFMPCNPSVGGPAKGVVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ LY   M++ I  QENLD+ QG  
Sbjct: 69  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHLYAQEMKKTIEQQENLDLKQGIA 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    ++ R   VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 129 ERLIVEDGVCKGVVSHTGAIYRSKAVVLTAGTSSRGQIIIGELKYSSGANNSQPSIKLSE 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGI 242
           + ++  F+  R KTGTP R+   +I + KTE Q  DE    FSF +     R   I C +
Sbjct: 189 NLLELGFELARFKTGTPPRVKSSSIDYSKTEIQPGDETPNLFSFTSKDEDYRYDQIPCWL 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEG NT
Sbjct: 249 TYTNEGTHEKIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFLEPEGENT 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q Q I T+ GLEK  ++R GYAIEYD + P +L  T ETK +  
Sbjct: 309 EEVYIQGLSTSLPEDVQIQMIHTVEGLEKAEMMRTGYAIEYDVVIPHQLKNTFETKIVEN 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QGL AGIN+ RK    +     R+D+YIGV++DDL +KG  E
Sbjct: 369 LFTAGQMNGTSGYEEAAGQGLYAGINAVRKIRGEESFILGRSDAYIGVLVDDLVTKGTTE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F +           ++S+ 
Sbjct: 429 PYRLLTSRAEYRLLLRHDNADLRLTEKGRELGLISDERYAAFQEKQAAIQAEIKRIQSIR 488

Query: 483 LTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L         L+    +  +DG      + L  P+ S  +L     +    S  V E+++
Sbjct: 489 LKPTEQLQSFLAEKESAELKDGI--LLSDLLKRPELSYDDLIGFAEEEVVVSREVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  + + + +++K  E + IP + DY ++  L+ E +++L +++P  + QAS+
Sbjct: 547 ISVKYEGYIAKAIEKVEKLKRMEAKRIPSNIDYDAINGLATEARQRLKLIQPETIAQASR 606

Query: 598 IEGMTPAALNLLLIYIKKNTV-KLNE 622
           I G+ PA +++L++YI++  + K+ E
Sbjct: 607 ISGVNPADVSILMVYIEQGKIAKVQE 632


>gi|261856911|ref|YP_003264194.1| glucose inhibited division protein A [Halothiobacillus neapolitanus
           c2]
 gi|261837380|gb|ACX97147.1| glucose inhibited division protein A [Halothiobacillus neapolitanus
           c2]
          Length = 626

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/617 (47%), Positives = 392/617 (63%), Gaps = 6/617 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++GA T LI+H   T+G MSCNPAIGG+GKGHLVREIDAL
Sbjct: 7   FDVIVVGGGHAGTEAALAAARMGAKTLLISHNIETLGQMSCNPAIGGIGKGHLVREIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD  GIQFR LN +KGPAVR  R QADR LY+ A+++ + +Q NL + Q  V 
Sbjct: 67  GGAMALAADRGGIQFRTLNARKGPAVRATRAQADRILYKAAIRQMLENQPNLMLFQQAVD 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   ++ I  Q        TVVLT GTFL G IHIG      GR GD P+  L + 
Sbjct: 127 DLLLDGERVTGIRTQAGIEFTGKTVVLTAGTFLAGQIHIGMNNYQGGRAGDPPAQRLADR 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +     GRLKTGTP R+D ++I     + Q  D     FSFM   K   +Q+ C IT 
Sbjct: 187 LRELSLGVGRLKTGTPPRIDIRSIDLSVMQVQPGDTPEPVFSFMGSVKDHPQQVNCYITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II   +  S +++G I+  GPRYCPSIEDKI RF +++ HQ+F+EPEGL T+ 
Sbjct: 247 TNERTHEIIRGGLDRSPMFTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFVEPEGLTTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ  ++R+I G E+  I RPGYAIEYD+ +P+ L PTLET+ I GLF
Sbjct: 307 IYPNGISTSLPFDIQLDYVRSIRGFERAVITRPGYAIEYDFFDPRGLKPTLETRAIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG N+A +    + +   R ++Y GVMIDDL ++G LEPY
Sbjct: 367 FAGQINGTTGYEEAGAQGLMAGANAAARVLGREPLTLRRDEAYAGVMIDDLITQGTLEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLTPIG  LG + E R + F + ++     ++ L +L + 
Sbjct: 427 RMFTSRAEYRLMLREDNADQRLTPIGHALGLVDEARWRAFNEKMEAIAREQARLGALWVH 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESS 541
             +   + +      +   A + L  P+   Q L    S+ P++    + V E+++IE+ 
Sbjct: 487 PDHPDVSRLPG-VISRGVNALDLLRRPEMDYQQLAQVPSLAPESP-LPAAVTEQIEIEAK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E      +E +++P D DYS +  LSNE++ KL   +P  L QA +I G+
Sbjct: 545 YAGYVDRQKDEVSRSVKQETQVLPDDLDYSQIYGLSNEVRSKLETHRPSTLGQAGRIPGV 604

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++LL +++K+ ++
Sbjct: 605 TPAAISLLQVHLKRRSL 621


>gi|253702731|ref|YP_003023920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter sp. M21]
 gi|251777581|gb|ACT20162.1| glucose inhibited division protein A [Geobacter sp. M21]
          Length = 624

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/617 (48%), Positives = 392/617 (63%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +++YDVIV+G GHAGCEAA  AA++G ST ++T     I  MSCNPAIGGL KGHLV+
Sbjct: 3   VYDKTYDVIVVGAGHAGCEAALAAARMGRSTLMLTINLDAIALMSCNPAIGGLAKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  DA GIQFRVLN KKGPAVR  R QAD++LYRL M+  +  Q+NLD+ 
Sbjct: 63  EIDALGGEMGRNIDATGIQFRVLNTKKGPAVRASRAQADKQLYRLRMKHVMELQDNLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E   ++ +  +        TVVLTTGTF+RG+IHIG +  P GR GD PS 
Sbjct: 123 QVEVTNLYLEGGSVAGVDTKGGVRYLGRTVVLTTGTFMRGLIHIGLVNYPGGRAGDLPSI 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +      F+ GRLKTGTPARLDG+TI +D+ E Q  DE  IPFSF T++I   Q+ C
Sbjct: 183 GLSDGLKDVGFEVGRLKTGTPARLDGRTIDFDRLEAQHGDENPIPFSFSTERIEQPQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  TN ++H II   +  S +Y+G I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG 
Sbjct: 243 HVAYTNPKSHDIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPEKDRHQTFIEPEGR 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VYP+G+ST+LP +IQ  F R+I GLE+V I+RP YAIEYDY+NP +L  +LETK +
Sbjct: 303 ETVEVYPSGMSTSLPIDIQWAFYRSIEGLERVEIMRPAYAIEYDYVNPIQLHASLETKLV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAAAQGL+AGIN+A K      +   R+++YIGVMIDDL + G 
Sbjct: 363 RNLYHAGQINGTSGYEEAAAQGLMAGINAALKVQGRQPLVLGRSEAYIGVMIDDLVTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G ++G + E     F    +        L  
Sbjct: 423 KEPYRMFTSRAEYRLLLREDNADLRLREKGHEIGLVPESLYHTFLAKKELIEAELDRLSR 482

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             LT        +            +  + L  PDF+  +L  I P+  +    V E+L+
Sbjct: 483 ERLTPSAAGEELLQEWDLVGIQNAVSYEQLLRRPDFTCSDLARIYPEIMELPETVREQLE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+ +       E   IP + DY ++P+LS E++EKL   +P  L QAS+
Sbjct: 543 IQIKYKGYIERQLEQVARAARLESTTIPAEMDYGTVPSLSAEVREKLVRFRPDTLGQASR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPA + +L I +K
Sbjct: 603 IPGVTPAGITILSIALK 619


>gi|124268971|ref|YP_001022975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylibium petroleiphilum PM1]
 gi|205831533|sp|A2SMF1|MNMG_METPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|124261746|gb|ABM96740.1| putative glucose inhibited division protein A [Methylibium
           petroleiphilum PM1]
          Length = 667

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/652 (44%), Positives = 390/652 (59%), Gaps = 33/652 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G +T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + 
Sbjct: 62  EIDALGGAMALATDEAGIQFRILNGSKGPAVRATRAQADRVLYKAAIRRRLENQPRLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + +   V Q     R   VVLT GTFL G IH+G     AGR GD P+ 
Sbjct: 122 QQAVDDLIVEGDRVIGAVTQVGVRFRSKAVVLTAGTFLDGRIHVGLQNYAAGRAGDPPAQ 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDK-ITNRQI 238
           SL     +     GRLKTGTP R+DG+TI +++  +Q  D   +P FS+M D  +  RQ+
Sbjct: 182 SLSARLKELQLPQGRLKTGTPPRIDGRTIDFERLLEQPGDADPVPVFSYMGDAAMHPRQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T+  TH II      S +++G I+  GPRYCPSIEDK+ RF ++  HQIFLEPE
Sbjct: 242 PCWITHTSERTHEIIRSGFDRSPMFTGVIEGVGPRYCPSIEDKVNRFADKTSHQIFLEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T   YPNGIST+LP +IQ   +R++ GLE+ +I+RPGYAIEYDY +P+ L  + ETK
Sbjct: 302 GLSTHEFYPNGISTSLPFDIQLAALRSMSGLEQAHILRPGYAIEYDYFDPRGLKSSFETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL AG+N+AR+  +LD     R  +Y+GV++DDL +K
Sbjct: 362 AIGGLFFAGQINGTTGYEEAAAQGLFAGVNAARQVQELDAWLPRRDQAYLGVLVDDLITK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + + R   F +     +     L
Sbjct: 422 GVTEPYRMFTSRAEFRLQLREDNADLRLTDAGREMGLVDDERWAAFNRKRDAVSRETERL 481

Query: 479 KSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC------------- 522
           KS  + +  L    +  +  K         + L  P      +  +              
Sbjct: 482 KSTWVNAALLPAADAERLVGKALEHEYALVDLLRRPGVDFDAVAEVAQIAHARRSEGRQA 541

Query: 523 ---------------PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
                                +  VI++L+  + YA Y  +Q  + +     E   +P+ 
Sbjct: 542 DDPAAAAWSRAALRNEWGPALADAVIQQLETATKYAGYIDKQNEQVERAAQYEDLKLPES 601

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            DY  + ALS+E+++KL  L+P  L QA+++ G+TPAA++LLLI++KK   +
Sbjct: 602 LDYRQVAALSHEVRQKLQALRPETLGQAARVSGVTPAAISLLLIHLKKGRHR 653


>gi|284050122|ref|ZP_06380332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Arthrospira platensis str. Paraca]
 gi|291570408|dbj|BAI92680.1| glucose inhibited division protein A [Arthrospira platensis
           NIES-39]
          Length = 637

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/625 (43%), Positives = 373/625 (59%), Gaps = 9/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D+IV+GGGH+GCEAA  AA+LG  T L+T     IG   CNPA+G   K  L  E
Sbjct: 9   FQEEFDIIVVGGGHSGCEAALAAARLGCRTLLLTLNLDKIGWQPCNPAVGAPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL V +
Sbjct: 69  VDALGGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMRQIVENQENLSVRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V        + I  +         C  V+LTTGTFL G+I +G   +PAGR G+  + 
Sbjct: 129 GMVTDLVLGLNDEIIGVETYFGVAFACQAVILTTGTFLGGIIWVGNKSMPAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++  +  F+TGRLKTGTPAR+D +++ +   E Q  DER+  FSF     +   Q+ 
Sbjct: 189 GLTDTLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDERVRWFSFDPQVWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE++Q + +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RHIPELYIQGFSTGLPEKLQLEMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+ +     D I F R  SYIG +IDDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAVKLVRGEDMIVFPREQSYIGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWQLFQQKQANIIAEKQRLD 488

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +  K      I+   D +     + +  E L  P F   NL        + S    E
Sbjct: 489 QTRV--KERDEIGIAIASDTQQKIKGSISLAELLRRPGFHYGNLEHYNLGNSQLSLEEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +IE  Y+ Y  RQ  +  +I     R +P+D DY ++  LS E +EKL+ +KP  + Q
Sbjct: 547 GAEIEIKYSGYMERQQNQIDQISRHANRQLPQDLDYLTIETLSMESREKLNRIKPLTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+ PA +N LLIY++    +
Sbjct: 607 ASRIGGVNPADINALLIYLEVRHRQ 631


>gi|119510372|ref|ZP_01629507.1| glucose-inhibited division protein A [Nodularia spumigena CCY9414]
 gi|119465009|gb|EAW45911.1| glucose-inhibited division protein A [Nodularia spumigena CCY9414]
          Length = 638

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/621 (43%), Positives = 372/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 7   FQDAFDVIVVGAGHSGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+VAD   +Q R+LN  +GPAV   R Q+D+  Y   M+  + +QENL + +
Sbjct: 67  VDALGGEIGKVADRTYLQKRILNSSRGPAVWALRAQSDKREYAAVMKTIVENQENLSIRE 126

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                      + +  +         C  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 127 AMATDLVLGANDEVIGVETYFGVAFGCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K   Q  DE +  FSF  D  I   QI 
Sbjct: 187 GLTQTLNRLGFETGRLKTGTPARVDKRSVDYSKMTIQPGDEEVRWFSFDPDVWIKKEQIP 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETHR+I +N+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 247 CYITRTTAETHRLIRDNLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKQSHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 307 RDIPELYIQGFSTGLPETLQLQMLRSLPGLENCTMLRPAYAVEYDYLPATQCYPTLMTKK 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQINGTTGYEEAAAQG+VAGIN+AR     + I F R  SY+G ++DDL +K 
Sbjct: 367 ISGLFCAGQINGTTGYEEAAAQGIVAGINAARLVRGEEMIVFPREHSYLGTLVDDLCTKD 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR   F     +    ++ L 
Sbjct: 427 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWNLFTDKQTQITTEKARLY 486

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +   +    +  S+S +    + T  E L  P F   +L S             E  
Sbjct: 487 ATRIKEHDEIGQAIASVSQQTIKGSITLAELLRRPGFHYVDLDSYGLGNPNLKQAEKEGA 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I  +  R +P D DY+++  LS E +EKLS +KP  L QAS
Sbjct: 547 EIDIKYSGYLARQQNQIEQIARQAHRQLPADLDYTTIDTLSKEAREKLSKVKPLTLGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +  G+ PA +N LLIY++   
Sbjct: 607 RTGGVNPADINALLIYLELRK 627


>gi|310659880|ref|YP_003937601.1| glucose-inhibited cell-division protein [Clostridium sticklandii
           DSM 519]
 gi|308826658|emb|CBH22696.1| glucose-inhibited cell-division protein [Clostridium sticklandii]
          Length = 631

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 382/621 (61%), Gaps = 3/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+V+G GHAGCEAA  +A+LG  T ++T     I  + CNP+IGG GKGHLVREIDA
Sbjct: 7   TYDVVVVGAGHAGCEAALASARLGMKTLVVTLSLDAIAFLPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R Q D+ +Y + M++ + +  NLD++  EV
Sbjct: 67  LGGEMGLNTDKTFIQSRMLNTAKGPAVHSLRAQNDKNMYHMEMKKTLENTPNLDIVMDEV 126

Query: 125 AG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + E   ++ ++ +  +M     V+L TG +L+  ++IG++   +G +G + ++ L 
Sbjct: 127 IEILHDEDKKVTGVLTKLRAMYEAKAVILATGVYLKSKVYIGEVNYSSGPIGLNSADGLT 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K      R KTGTPAR+   +I + K E Q  DE+++PFSFM D I   Q+ C +T
Sbjct: 187 ESLEKLGLPLRRFKTGTPARVHADSIDFSKMEVQHGDEKIVPFSFMNDYIGENQVVCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +TH II+ N+  SA+Y GD+ S GPRYCPSIEDK+VRF ++  HQ F+EPEGLNT 
Sbjct: 247 RTTPKTHEIILNNLGRSALYRGDMDSKGPRYCPSIEDKVVRFKDKETHQFFVEPEGLNTK 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G S++L  E+Q +   T+ GLE   ++RP YAIEYD I+P  L P+LE K +SGL
Sbjct: 307 EYYIQGFSSSLAYEVQLEMYHTVKGLENAKLMRPAYAIEYDCIDPLHLKPSLEIKDVSGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ NGT+GYEEAA+QGL+AGIN+ R     +     R++SYIGV+IDDL +KG  EP
Sbjct: 367 FSAGQFNGTSGYEEAASQGLIAGINAVRHIKDEEPFILDRSESYIGVLIDDLVTKGTNEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RLT  G ++G + + R ++F     + +     LK   +
Sbjct: 427 YRIMTSRAEYRLLLRQDNADLRLTEKGREVGLVTDERYEKFITKKTQIDAELKRLKIEKV 486

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                +     +      +T   YEFL   + +   L  +    ++ SS VIE+ +I   
Sbjct: 487 KPDEANPLLEEMGASPLSRTLPLYEFLKRTEVNYTVLDKLEKGNKELSSQVIEQCEITVK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +  K  EK+ +P+  DY ++  L  E ++KL+ +KPFN+ QAS+I G+
Sbjct: 547 YEGYIKKQLDQVESFKKLEKKKLPETLDYETISGLRIEARQKLNEIKPFNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           +PA +++LLIY++    K  E
Sbjct: 607 SPADISVLLIYMQTQKAKSKE 627


>gi|291536995|emb|CBL10107.1| glucose-inhibited division protein A [Roseburia intestinalis M50/1]
          Length = 652

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/648 (40%), Positives = 376/648 (58%), Gaps = 25/648 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGFNT--------------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            EVA   T                    E   I+ +      +  C  VVL TGT+LR  
Sbjct: 124 AEVAEIITVPANSAAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAVVLCTGTYLRAR 183

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
              G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++Q  DE
Sbjct: 184 CLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQEQKGDE 243

Query: 222 RLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           R++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRYCPSIE
Sbjct: 244 RVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRYCPSIE 303

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           DK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I+R  Y
Sbjct: 304 DKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKIVRNAY 363

Query: 340 AIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
           AIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A      + +
Sbjct: 364 AIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMGILGKEPL 423

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
              R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I + 
Sbjct: 424 VLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIGLISKE 483

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQ 516
           R     K  +        +  + + +       +         T     E +  P+    
Sbjct: 484 RYDWVCKKEELIAQEIERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELIRRPELDYD 543

Query: 517 NLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F+Y  +P+L
Sbjct: 544 KLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENFNYDDVPSL 603

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
             E ++KL    P ++ QAS+I G++PA +++LL+Y+++      E  
Sbjct: 604 RIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQMKYHEKESA 651


>gi|126655030|ref|ZP_01726469.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
 gi|126622509|gb|EAZ93214.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
          Length = 634

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/622 (41%), Positives = 372/622 (59%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDSFDIIVVGAGHSGCEAALAAARLGCRTLMLTLNLDRIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQENLSIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      + + +  I     +  +   V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 GMVTDLVLGKNDEVIGIQTYFGTCFQAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++     F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF  +  +   Q+ 
Sbjct: 189 GLTDTLNDLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDEEVRWFSFDPEVWVEKEQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTTKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 REIPELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAGIN+ +     + I F R +SY+G ++DDL +K 
Sbjct: 369 IQGLFCAGQVNGTTGYEEAAAQGIVAGINAVKFVKNEEMIIFPREESYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F          +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWALFEHKQANIVAEKERLY 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +  ++  +  I   + ++   + T  + L  P F  Q+L       +  + +  E  
Sbjct: 489 ETRIKERDEVAIKIVNDTQQKIKGSATLADLLRRPKFHYQHLEKYGLGNQNLTIVEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ I+  +I     + +P D DY ++  LS E +EKL+ ++P  L QAS
Sbjct: 549 EIDIKYSGYLKRQQIQIDQITRHSNKKLPSDLDYMAIDTLSMEAREKLTKVRPLTLGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +N LL+Y++  + 
Sbjct: 609 RIGGVNPADINALLVYLELRSR 630


>gi|86605018|ref|YP_473781.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. JA-3-3Ab]
 gi|123507844|sp|Q2JXG8|MNMG_SYNJA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86553560|gb|ABC98518.1| glucose-inhibited division protein A [Synechococcus sp. JA-3-3Ab]
          Length = 643

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 374/625 (59%), Gaps = 5/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAGCEAA  AA+LG +T ++T     I    CNPA+GG  K  LV EIDA
Sbjct: 14  HYDVIVVGGGHAGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +G V
Sbjct: 74  LGGEMGKVTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLSIREGTV 133

Query: 125 AGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                   + +  +V    S+  C  V+LTTGTFL G I IG+   PAGR G+     L 
Sbjct: 134 TDLVLGRNDEVVGVVTHFGSVFGCGAVILTTGTFLGGRIWIGRHWQPAGRAGEFAVEGLT 193

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           ++  +  F+TGRLKTGTPAR+D +++ +   E+Q  D  L  FSF  +  +   Q++C +
Sbjct: 194 DTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDLRWFSFDPEVWVPREQMDCYL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETHRII EN+  + +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 254 TRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDL 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST +PE+IQ Q +R++PGLE+  ++RP YA+EYDY+   +L+PTL TKK+ G
Sbjct: 314 PELYIQGFSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL +K + E
Sbjct: 374 LFCAGQINGTTGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIGTLIDDLCTKELRE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G + G I +RR   F             L++  
Sbjct: 434 PYRMLTSRSEYRLILRADNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQR 493

Query: 483 LTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           + + + +   +S    +    + T  E L        +L  +     +      E  +I 
Sbjct: 494 VKAHDPAGIHLSQLTGQGIKGSATLAELLRRNPIHYADLLELGLGNEELDPFEQEAAEIA 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y  RQ  + +++  +  R +P D DY S+P LS E +EKL+ ++P  + QA++I 
Sbjct: 554 VKYSGYIQRQQAQIEQVSKQYHRPLPPDLDYHSIPTLSKESREKLAAVRPLTVGQAARIG 613

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIV 624
           G+ PA +N LLIY++    +     
Sbjct: 614 GVNPADINALLIYLEVRQRQKTAAA 638


>gi|294789396|ref|ZP_06754633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Simonsiella muelleri ATCC 29453]
 gi|294482609|gb|EFG30299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Simonsiella muelleri ATCC 29453]
          Length = 628

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/619 (45%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L++H   T+G MSCNPAIGG+GKGHLVRE+D
Sbjct: 5   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLSHNIETLGQMSCNPAIGGIGKGHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY++A++  + +QENL++ Q  
Sbjct: 65  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKVAIREMLENQENLELFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S +        +  +VVLT GTFL G IHIG      GR GD  + +L 
Sbjct: 125 VTDITLDGDRVSGVNTAMGLEFKARSVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKTLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               + +   GRLKTGTP R+DG+TI + +  +Q  D     FS   ++ +  RQI C I
Sbjct: 185 TRLREMNLPQGRLKTGTPPRIDGRTIDFSQLTEQAGDTPTPIFSVRGNQAMHPRQISCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TNL+TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 245 THTNLKTHEIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  ++ETK I+G
Sbjct: 305 HEYYPNGISTSLPFDIQLALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASMETKTIAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+GV++DDL +KGV E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGANAVQFVREQDPLLLRREQAYLGVLVDDLITKGVNE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G ++G + E++ + F    +        LKS  
Sbjct: 425 PYRMFTSRAEYRLQLREDNADMRLTELGYRIGLVSEQQWRDFGTKRENIEREIQRLKSTW 484

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQ 537
            T   L       +  ++  +    ++ L  P+     L ++     +   +  V+E+++
Sbjct: 485 YTPLKLDVAEQERVFGQKLAREANLHDLLRRPNLDYTKLMTLPNALPESPLADDVVEQVE 544

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ  E    +  E   +P++ DY+ +  LS E+++KL+  KP  + QAS+
Sbjct: 545 IQVKYQGYIDRQNDEIDSRRDIETLRLPENIDYAKVKGLSAEVQQKLNKYKPETVGQASR 604

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+ LL++++K+ 
Sbjct: 605 ISGVTPAAVALLMVHLKRG 623


>gi|238917974|ref|YP_002931491.1| glucose inhibited division protein A [Eubacterium eligens ATCC
           27750]
 gi|238873334|gb|ACR73044.1| glucose inhibited division protein A [Eubacterium eligens ATCC
           27750]
          Length = 627

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/624 (42%), Positives = 372/624 (59%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDV+V+G GHAGCEAA  AA++G  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IREEYDVVVVGAGHAGCEAALAAARMGLETIIFTVSVESIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  DA  IQ ++LN  KGPAV   R QAD+  Y   M+  + + E+L + Q
Sbjct: 64  IDALGGEMGKNIDATFIQSKMLNASKGPAVHSLRAQADKSDYSRRMRNVLENTEHLHIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+        I  +     +      VVL TG +L+     G +    G  G   +N 
Sbjct: 124 AEVSEIIVNDGKIGGVKTVSGAEYIAKAVVLCTGVYLKARCIYGDVSYHTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L  S +    +  R KTGTPAR+D +++ + K  +QF D+R++PFSF TD   I   Q+ 
Sbjct: 184 LTQSLIDNGIEVRRFKTGTPARVDKRSVDFSKMTEQFGDKRVVPFSFETDPESIQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN ETH+IIM+N+  S +YSGDI   GPRYCPSIEDK+VRF +++ HQ+F+EPEG
Sbjct: 244 CWLTYTNEETHKIIMDNLDRSPLYSGDIHGTGPRYCPSIEDKVVRFADKDRHQVFIEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S+++PE++Q+   RT+PGLE V I+R  YAIEYD IN  +L  +LE KK
Sbjct: 304 LYTNEMYLGGMSSSMPEDVQYAMYRTVPGLENVRIVRNAYAIEYDCINAVQLKSSLEFKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAAAQG++AGIN+A    K + +   R++SYIGV+IDDL +K 
Sbjct: 364 IEGLFAGGQFNGSSGYEEAAAQGIIAGINAALFVKKEEPLILDRSESYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RLT  G ++G I E R  R  + IQ  +     +K
Sbjct: 424 TAEPYRMMTSRAEYRLILRQDNADIRLTKYGYRVGLISEERMNRLTRKIQLIDEEIERVK 483

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+ + + +     ++     +     T  E +  P+ S   L  I     +    V E++
Sbjct: 484 SVNIGTGSEVQKVLTDNGSTELTTGATLAELIRRPELSYDVLAPIDKHRPELPWDVCEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ + +  K  E +LIP   DY  +  L  E  +KL   +P ++ QAS
Sbjct: 544 NINLKYEGYIDRQLRQVEHFKKLENKLIPDSLDYLGISGLRKEAMQKLDKFRPRSIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G++PA +++LL+Y++    K 
Sbjct: 604 RISGVSPADISVLLVYLESLRRKY 627


>gi|257866267|ref|ZP_05645920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC30]
 gi|257873217|ref|ZP_05652870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC10]
 gi|257800225|gb|EEV29253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC30]
 gi|257807381|gb|EEV36203.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus casseliflavus EC10]
          Length = 631

 Score =  762 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/622 (41%), Positives = 374/622 (60%), Gaps = 9/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  A+++GA T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAASRMGAKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I  + NL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYAAEMKRTIEKEANLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+     +V    +  +   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEKLIVEEGECRGVVTSTGARYQAQAVVITAGTALRGEIIIGELKYSSGPNNSQPSIGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           +   +   +  R KTGTP R+   TI ++ TE Q  DE+   FS+ T  +     Q  C 
Sbjct: 187 DHLKELGLEIARFKTGTPPRVKSSTINYEVTEIQPGDEQPNHFSYSTPDEAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGL+
Sbjct: 247 LTYTNEGTHQIINQNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKSRHQLFLEPEGLD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST++PE++Q Q + +I GLEK  ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSMPEDVQVQMLHSIAGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ NGT+GYEEAA QGL+AGIN+A K    +     R+D YIGVMIDDL +KG  
Sbjct: 367 NLFTAGQTNGTSGYEEAAGQGLIAGINAALKIQGKEPFIMKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E + + +    +        L  +
Sbjct: 427 EPYRLLTSRAEYRLLLRHDNADLRLTEVGHQIGLVPEGQYEAYVAKKEAVEAEIKRLSKI 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +         L++   +  +DG    A EFL  P+ +   +              IE++
Sbjct: 487 RIKPTPEVQAYLTAKGTATLKDGV--LANEFLRRPEVTYAEMLQFIEANEALKPKEIEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  + + + +++K  E + IP++ DY+++  L+ E K+KL  ++P  + QAS
Sbjct: 545 EIQIKYEGYIKKALEKVEKLKRMEAKRIPENIDYAAINGLATEAKQKLQKIQPETIAQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +++L++YI++  +
Sbjct: 605 RISGVNPADISILMVYIEQGKI 626


>gi|229551113|ref|ZP_04439838.1| glucose-inhibited division protein A [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315505|gb|EEN81478.1| glucose-inhibited division protein A [Lactobacillus rhamnosus
           LMS2-1]
          Length = 639

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 17  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 77  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 136

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 137 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 196

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T        Q+ C +
Sbjct: 197 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 257 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 317 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVRN 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 377 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 437 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 496

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 497 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLAQFLPETPTLDHRVIEQVEI 554

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   DY ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 555 QIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPETIAQASRI 614

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 615 SGVNPADVAILSVYIEQGRISK 636


>gi|167759570|ref|ZP_02431697.1| hypothetical protein CLOSCI_01927 [Clostridium scindens ATCC 35704]
 gi|167662797|gb|EDS06927.1| hypothetical protein CLOSCI_01927 [Clostridium scindens ATCC 35704]
          Length = 634

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/618 (42%), Positives = 373/618 (60%), Gaps = 9/618 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL
Sbjct: 15  YDVVVIGAGHAGCEAALATARLGYQTMVFTVSVESIALMPCNPNIGGSSKGHLVREIDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+NLD+ Q EV 
Sbjct: 75  GGEMGKVIDQTFIQSKMLNKSKGPAVHSLRAQADKAWYSRTMRQVLENQDNLDIKQDEVV 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++  ++ +     ++  C  V+L TGT+LR     G +    G  G   +N L + 
Sbjct: 135 KILVDEGKVTGVQTFSGTIYPCRAVILCTGTYLRSRCIYGDVSNYTGPNGLQAANYLTDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
                    R KTGTPAR+D  ++ + K E+QF DE++IPFSF TD   +   Q  C +T
Sbjct: 195 LEDLGIKMYRFKTGTPARIDKNSVDFSKMEEQFGDEKVIPFSFTTDPKDVQIDQSSCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II +N+  S ++SG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL T+
Sbjct: 255 YTNPRTHEIIRKNLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGLETN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  RT+PGLE V I+R  YAIEYD I+ ++L P+LE K ISGL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRTVPGLENVKIVRNAYAIEYDCIDARQLRPSLEFKNISGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +  GQ NG++GYEEAAAQGL+AGIN+ARK    + I   R+ +YIGV+IDDL +K   EP
Sbjct: 375 YSGGQFNGSSGYEEAAAQGLIAGINAARKLQGKESIILDRSQAYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG ++G I E+R  R  +  +        L    +
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTRIGYEVGLISEKRYHRLLEKEELIQKEVKRLTHASV 494

Query: 484 TSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSLVIERL 536
            +       +            T  E +  P+ S + L  I         +    V+E++
Sbjct: 495 GANEKVQNLLKSYESTPLSSGSTVAELIRRPELSYEMLADIDECRPVLPEELEEEVVEQI 554

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ  + ++ K  E + IP+D DY+ + +L  E  +KL   +P ++ QAS
Sbjct: 555 NISIKYDGYISRQKKQVEQFKKLENKKIPEDIDYNLVKSLRLEALQKLKEYRPASIGQAS 614

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G++PA +++LL+Y++
Sbjct: 615 RISGVSPADISVLLVYLE 632


>gi|258541096|ref|YP_003175595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus Lc 705]
 gi|257152772|emb|CAR91744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG/GidA [Lactobacillus rhamnosus Lc 705]
          Length = 633

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVRN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLAQFLPETPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   DY ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|262279572|ref|ZP_06057357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus RUH2202]
 gi|262259923|gb|EEY78656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter calcoaceticus RUH2202]
          Length = 626

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTTGTFLGGVIHVGLQKSSGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
               +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 QRLRELKLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPVMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+G
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAING 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTTVGRELGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSEQVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPTDFNYDIVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN +
Sbjct: 603 GVTPAAVQLVMITIRKNNM 621


>gi|260567469|ref|ZP_05837939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 4 str. 40]
 gi|260156987|gb|EEW92067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 4 str. 40]
          Length = 636

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIQANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|255319490|ref|ZP_05360704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SK82]
 gi|262378486|ref|ZP_06071643.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SH164]
 gi|255303430|gb|EET82633.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SK82]
 gi|262299771|gb|EEY87683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter radioresistens SH164]
          Length = 626

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 392/619 (63%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR LY+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRILYKAAIRNVLENQTNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELKLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPTMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +YIGV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYIGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++      S L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVERETSRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++ +   K  +A + L  P+ + + +  +     + +  V ++++I 
Sbjct: 485 AAPNNPMGKKFVEMTGQDLSKESSAIDLLKRPNVTFEQIAELT--DSEVTQQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+ +KL  + P  L QAS+I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETRIPADFNYDVVSGLSREITQKLKTVLPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN  
Sbjct: 603 GVTPAAVQLIMITIRKNAQ 621


>gi|255974477|ref|ZP_05425063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T2]
 gi|307284015|ref|ZP_07564185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0860]
 gi|255967349|gb|EET97971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T2]
 gi|306503386|gb|EFM72635.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0860]
          Length = 632

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|148559142|ref|YP_001259866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ovis ATCC 25840]
 gi|166222912|sp|A5VT19|MNMG_BRUO2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148370399|gb|ABQ60378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ovis ATCC 25840]
          Length = 636

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQIITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ +  AGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFQAGRMGEKPALGLSKR 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|312952944|ref|ZP_07771800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0102]
 gi|310629085|gb|EFQ12368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0102]
          Length = 632

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/628 (42%), Positives = 373/628 (59%), Gaps = 10/628 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           S+I G+ PA +++L++YI++  +   E+
Sbjct: 605 SRISGVNPADISILMVYIEQGKIAKVEV 632


>gi|291539800|emb|CBL12911.1| glucose-inhibited division protein A [Roseburia intestinalis XB6B4]
          Length = 657

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/653 (40%), Positives = 376/653 (57%), Gaps = 30/653 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGFNT-------------------------EKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EVA   T                         E   I+ +      +  C  VVL TGT
Sbjct: 124 AEVAEIITVPANSADGETSAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAVVLCTGT 183

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           +LR     G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++
Sbjct: 184 YLRARCLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQE 243

Query: 217 QFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           Q  DER++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRY
Sbjct: 244 QKGDERVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRY 303

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I
Sbjct: 304 CPSIEDKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKI 363

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           +R  YAIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A    
Sbjct: 364 VRNAYAIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMSIL 423

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             + +   R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G
Sbjct: 424 GKEPLVLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIG 483

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYP 511
            I + R     K  +        +  + + +       +         T     E +  P
Sbjct: 484 LISKERYDWVCKKEELIAQEIERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELIRRP 543

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
           +     L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F+Y 
Sbjct: 544 ELDYDKLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENFNYD 603

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
            +P+L  E ++KL    P ++ QAS+I G++PA +++LL+Y+++      E  
Sbjct: 604 DVPSLRIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQMKYHEKESA 656


>gi|322412884|gb|EFY03792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 632

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDVIVIGAGHAGVEASLATSRMGCKTLLATINLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  Q NL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKSLYAREMKHTVEKQANLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++           VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 TMIDDILVEDGRVVGVLTATGQKFAAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIE 239
           L ++  KF  + GR KTGTP R+   +I +D+TE Q  D++   FSFM+        QI 
Sbjct: 185 LADNLKKFGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDDKPNHFSFMSKDADYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQISHDIINQNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFSDKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q + I +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKELIHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R   F     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDDRWNAFEIKKNQFDNELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+     + S     A    + +IE 
Sbjct: 485 SIKLKPIKETNDRVQDLGFKPLTDAMTAKEFMRRPEIDYATVVSFVGSAAEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDTIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA +++L+IY++ N
Sbjct: 605 SRISGVNPADISILMIYLEGN 625


>gi|254700691|ref|ZP_05162519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis bv. 5 str. 513]
 gi|261751200|ref|ZP_05994909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 5 str. 513]
 gi|261740953|gb|EEY28879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 5 str. 513]
          Length = 636

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADKAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG  P+  L   
Sbjct: 129 DLVCDSERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGGKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|171778577|ref|ZP_02919704.1| hypothetical protein STRINF_00556 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282800|gb|EDT48224.1| hypothetical protein STRINF_00556 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 632

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 377/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R +R+    ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDEERYERYLNRKRQFDKELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           SL +      N    ++ FK      TA EF+  P+ + +   S   P   K  S V+E 
Sbjct: 485 SLKIKPIKETNARIEALGFKPLTDALTAKEFMRRPEINYEIATSFVGPAEEKLDSKVVEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +++L++Y++
Sbjct: 605 SRISGVNPADISILMVYLE 623


>gi|254705062|ref|ZP_05166890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis bv. 3 str. 686]
 gi|261755765|ref|ZP_05999474.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 3 str. 686]
 gi|261745518|gb|EEY33444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella suis bv. 3 str. 686]
          Length = 636

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/610 (57%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLT GTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTIGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|229825397|ref|ZP_04451466.1| hypothetical protein GCWU000182_00753 [Abiotrophia defectiva ATCC
           49176]
 gi|229790401|gb|EEP26515.1| hypothetical protein GCWU000182_00753 [Abiotrophia defectiva ATCC
           49176]
          Length = 629

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/620 (43%), Positives = 380/620 (61%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   ++VIV+G GHAGCEAA  AA+LG    + T    +I  M CNP IGG  KGHLV+
Sbjct: 1   MICEDFEVIVVGAGHAGCEAALAAARLGKRVLIFTVSVDSIALMPCNPNIGGTSKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  D   IQ ++LN  KGPAV   R QAD+  Y L M++ + + +NL + 
Sbjct: 61  EIDALGGEMGRNIDKTYIQSKMLNKSKGPAVHSLRAQADKHTYSLEMRKVLENTDNLTIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EVA    E   ++ +     ++     V+L TGT+L+     G +    G  G S S 
Sbjct: 121 QAEVAEILVEGGKVAGVKTYSGAVYTAKAVILCTGTYLKARCIYGDVSEYTGPNGLSASI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S +    D  R KTGTPAR+D +TI + K E Q  DE+++PFSF+ +   I   QI
Sbjct: 181 HLTDSLLNIGIDLRRFKTGTPARVDKRTIDFSKMEVQNGDEKVVPFSFLNEDKDIGREQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN ETHRII ENI  S +Y G I+  GPRYCPSIEDK++RF +++ HQIF+EPE
Sbjct: 241 PCYLTYTNEETHRIIRENIDRSPLYGGIIEGVGPRYCPSIEDKVMRFADKDRHQIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y +G+S+++PE++Q    RTIPGLE V+I+R  YAIEYD I+   L  +LE K
Sbjct: 301 GEYTNEMYVDGMSSSMPEDVQVAMYRTIPGLENVHIVRNAYAIEYDCIDATTLKESLEFK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
             SGLF AGQ NG++GYEEAAAQGL+AGIN+ R  +K + +   R+D+YIGV+IDDL +K
Sbjct: 361 VASGLFAAGQFNGSSGYEEAAAQGLIAGINAVRLIDKKEPLILKRSDAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I + R +   K   +       L
Sbjct: 421 HTKEPYRMMTSRAEYRLLLRQDNADLRLTKIGYEIGLISKERYEALLKKETDIETEIKRL 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKT---RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           KS  +  K   +  ++           T  + +  P+ + + L +I  +  K S+ V E+
Sbjct: 481 KSKTIGGKKEVNDFLTENGSAALLGAVTLADLVKRPELNYELLAAIDNERPKLSTAVGEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  R+  + ++ K  E RLIP+  DY  +  +  E ++KLS ++P ++ QA
Sbjct: 541 VNINIKYEGYIEREYRQVEQFKKMENRLIPEGIDYEKIDNIRKEARQKLSEIQPLSVGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ + +LL+YI++
Sbjct: 601 SRISGVSPSDIAVLLVYIEQ 620


>gi|227529883|ref|ZP_03959932.1| glucose-inhibited division protein A [Lactobacillus vaginalis ATCC
           49540]
 gi|227350187|gb|EEJ40478.1| glucose-inhibited division protein A [Lactobacillus vaginalis ATCC
           49540]
          Length = 632

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/622 (42%), Positives = 372/622 (59%), Gaps = 13/622 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 13  NYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  +M+  I  Q NLD+ Q  V
Sbjct: 73  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRSMKETIEKQPNLDLRQATV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIEC 240
           +  +  FD  R KTGTP R++G TI +++TE+Q  D+ +  FSF T          QI C
Sbjct: 193 NLEELGFDLERFKTGTPPRINGNTIHYNETEEQPGDKEVHHFSFDTPDDHYLPLSEQISC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I +N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 253 WLTYTNPGTHELIRDNLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKSRHQIFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 313 DTDEWYVDGLSTSMPEEIQQKILHSVKGLEDAQLMRPGYAIEYDVVAPYQLHPTLETKLV 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALGKKPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G ++G + + R  +  K  ++     + LKS
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMGKGHEIGLVSDERYAKMEKKEKQVQDEIARLKS 492

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVI 533
             L   N      + +   +  +D    TA +F+  P  + + L    P  A +    VI
Sbjct: 493 EKLKPNNDEVNQFIEAHGDNRLKDAI--TAADFIKRPYVNYETLMKFIPAPAEELDRQVI 550

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  ++  +   +K  E + IP + DY  +  L+ E ++KL  ++P  L 
Sbjct: 551 EQVEIQLKYAGYIKKEEEKVARLKRMEAKRIPANIDYEKVDGLATEGRQKLEKIRPETLA 610

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G+ PA L +L +YI+K
Sbjct: 611 QASRISGVNPADLAILSVYIRK 632


>gi|320547684|ref|ZP_08041969.1| glucose inhibited division protein A [Streptococcus equinus ATCC
           9812]
 gi|320447759|gb|EFW88517.1| glucose inhibited division protein A [Streptococcus equinus ATCC
           9812]
          Length = 634

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/619 (43%), Positives = 377/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAG EA+  AA++G  T L T     +  M CNPAIGG  KG +VRE
Sbjct: 5   FAENYDVIVVGAGHAGVEASLAAARMGCKTMLATINLEMLSFMPCNPAIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYSRTMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S  
Sbjct: 125 SMIEEVLVEDGKVVGVRTATNQKFSAKAVVITTGTALRGEIILGELKYSSGPNNSLASIG 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R+   +I +D+TE Q  DE+   FSFM+  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVKASSINYDETEIQPGDEKPNHFSFMSNDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNQTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKELVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPEMILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF K  ++++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGHRVGLVDEERYARFLKRKRQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           SL +      N    ++ FK      TA EF+  P+ + +   S   P   K  S VIE 
Sbjct: 485 SLKIKPVKETNARIEALGFKPLTDALTAKEFMRRPEINYEIATSFVGPAEEKLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +++L++Y++
Sbjct: 605 SRISGVNPADISILMVYLE 623


>gi|199598241|ref|ZP_03211662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus HN001]
 gi|199590844|gb|EDY98929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus HN001]
          Length = 633

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVEN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYAVFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFASLKDGV--LASDFLKRPEINYQTLEQFLPENPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARINYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|322374003|ref|ZP_08048537.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C150]
 gi|321276969|gb|EFX54040.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus sp. C150]
          Length = 633

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/628 (42%), Positives = 376/628 (59%), Gaps = 6/628 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YD+IVIG GHAG EA+  AA++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FIEEYDIIVIGAGHAGVEASLAAARMGCKVLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY + M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDDILVEDGKVVGVRTATNQKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYEETEIQPGDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++N HQ+FLEPEG
Sbjct: 245 CWLTYTNQESHDIINNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKNRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q + + +I GLEK  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RETEEVYVQGLSTSLPEDVQKELLHSIKGLEKAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + + R   F     +++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTPIGREVGLVDDERWNIFEIKKNQFDSELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
              L      N    ++ FK      TA EF+  P+           P +    + +IE 
Sbjct: 485 KEKLKPVKETNEKIQALGFKPLTDAMTAKEFMRRPEIDYATATQFVGPASEDLDAKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           S+I G+ PA +++L++Y++ N     ++
Sbjct: 605 SRISGVNPADISILMVYLEGNNKARRKV 632


>gi|125624808|ref|YP_001033291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345425|sp|O32806|MNMG_LACLM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|124493616|emb|CAL98603.1| glucose inhibited division protein A [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071607|gb|ADJ61007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 625

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 375/621 (60%), Gaps = 8/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VRE
Sbjct: 3   FQENYDVIVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + Q
Sbjct: 63  IDALGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYAASMKNTVSDQENLTLRQ 122

Query: 122 GEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G V       EK  +  +     +      V++TTGT LRG I IG+LK  +G      S
Sbjct: 123 GMVEELILDDEKQKVIGVRTSTGTQYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSS 182

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQ 237
             L ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     Q
Sbjct: 183 IGLADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQ 242

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEP
Sbjct: 243 IPCWLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEP 302

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLET
Sbjct: 303 EGRNTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAKMMRPGYAIEYDVVMPHQLRPTLET 362

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +
Sbjct: 363 KLISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKIQGKPEFILKRSEAYIGVMIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + + + +   + +++     
Sbjct: 423 KGTLEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKR 482

Query: 478 LKSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           L S  L            + F       T  EFL  P+ +   +      A +     VI
Sbjct: 483 LNSEKLKPLPDTQEKLGKLGFGPIKDALTGAEFLKRPEVNYDEVIDFIGQAPEVIDRTVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L 
Sbjct: 543 ELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLG 602

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+ PA +++L++Y++
Sbjct: 603 QASRISGVNPADISILMVYLE 623


>gi|256045663|ref|ZP_05448541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|260562965|ref|ZP_05833451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. 16M]
 gi|265992085|ref|ZP_06104642.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|21263665|sp|Q8YJS5|MNMG_BRUME RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|260152981|gb|EEW88073.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. 16M]
 gi|263003151|gb|EEZ15444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 636

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/610 (57%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRL+MQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLSMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGNRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|282848772|ref|ZP_06258167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella parvula ATCC 17745]
 gi|282581558|gb|EFB86946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella parvula ATCC 17745]
          Length = 623

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/619 (41%), Positives = 373/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  D    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNLDNMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G + + R  +F            +L++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGRTIGLVKDDRWAKFTAKKAAIEEAMDMLRNTPVN 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +        RT   AY+ +   + S   +       ++++  V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIRTGIHAYDLVKRNELSYAVVADAF-GLKRYTPDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMEQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|291288765|ref|YP_003505581.1| glucose inhibited division protein A [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885925|gb|ADD69625.1| glucose inhibited division protein A [Denitrovibrio acetiphilus DSM
           12809]
          Length = 619

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/614 (47%), Positives = 385/614 (62%), Gaps = 4/614 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             ++YDVIV+G GHAGCEAA  +A++GA T L T    ++  MSCNPAIGGL KG++V++
Sbjct: 4   YGKTYDVIVVGAGHAGCEAALASARMGADTLLFTISVESLAQMSCNPAIGGLAKGNIVKD 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D  GIQFRVLN+KKGPAVR  R QAD+ELYR  M + I+ Q +LD+ Q
Sbjct: 64  IDALGGEMAKNTDETGIQFRVLNMKKGPAVRSSRAQADKELYRQRMLQVIMQQSSLDLKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V G   E   +  +V     + +   V+L+TGTFL+G+IHIG     AGRM +  S +
Sbjct: 124 GMVEGVEAESGEVVGVVSDTGMLYKAKKVILSTGTFLKGLIHIGDSHYSAGRMNEFASIN 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  K  F+T RLKTGTPARLD  TI + K E+Q  D    PFSF T +I   Q+ C 
Sbjct: 184 LVTSLHKLGFETERLKTGTPARLDVGTIDFSKLEEQGGDNPPKPFSFETKEILLPQVPCF 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II EN+  S +Y G I+  GPRYCPSIEDK+ +F  ++ HQIFLEPEGL 
Sbjct: 244 ITYTNENTHNIIRENMHRSPLYGGIIEGIGPRYCPSIEDKVKKFPHKDRHQIFLEPEGLK 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +   Y NG S++LP ++Q    R++PGLEKV  +RP YAIEYD++ P  L PT+ETK + 
Sbjct: 304 SREYYANGFSSSLPIDVQIAMYRSVPGLEKVEFVRPAYAIEYDFVQPTALHPTMETKHVK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+  GQ+NGT+GYEEAAAQGLVAGIN+    +  +     R +SYIGVM DDL +KGV 
Sbjct: 364 GLYFTGQLNGTSGYEEAAAQGLVAGINAVLAVDGKEPFIVKRDESYIGVMCDDLVNKGVD 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMF+SRAEYR+ LR DNA+ RL   G  LG I + R +RF K  + +    S L + 
Sbjct: 424 EPYRMFSSRAEYRLWLREDNAEYRLLEKGYDLGLISKTRYERFQKEKEAFENEFSRLNNF 483

Query: 482 VLTS-KNLSSTSISFKQDGKTRT-AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +T  K+       +    +T+T A E L  P+ +  ++  +          + E+++I 
Sbjct: 484 EITPSKDNLEILAEYNIAPRTKTNAKEILRRPELTYADIKKMFGGTD--DEKISEQVEIA 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q  E ++    E   +P D  Y  +  L  E  EKL+ ++P  L QAS+I+
Sbjct: 542 VKYEGYLNKQKEEIEKFNRTENVKLPDDIRYDDIQGLRREYIEKLNTIRPQTLGQASRIK 601

Query: 600 GMTPAALNLLLIYI 613
           GMTPAA++LL IYI
Sbjct: 602 GMTPAAVSLLHIYI 615


>gi|163844079|ref|YP_001628483.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella suis ATCC 23445]
 gi|189039332|sp|B0CJG1|MNMG_BRUSI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163674802|gb|ABY38913.1| glucose-inhibited division protein A [Brucella suis ATCC 23445]
          Length = 636

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/610 (57%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG +SCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVISCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLA+Q+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAIQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + + R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSKERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|258509932|ref|YP_003172683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus rhamnosus GG]
 gi|257149859|emb|CAR88832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           MnmG/GidA [Lactobacillus rhamnosus GG]
 gi|259651192|dbj|BAI43354.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactobacillus rhamnosus GG]
          Length = 633

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/622 (43%), Positives = 371/622 (59%), Gaps = 8/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 11  TYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y  +M+  I    +LD+ QG  
Sbjct: 71  LGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV    ++ R  ++VLT GT  RG I IG+L   +G     PS  L  
Sbjct: 131 TEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSE 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F   R KTGTP R++G TI + KTE+Q  D+    FSF T        Q+ C +
Sbjct: 191 NLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWM 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T
Sbjct: 251 TYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y    ST++PEEIQ + + ++ GLE   ++R GYAIEYD I P +L  TLETK +  
Sbjct: 311 SEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVEN 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QG+VAGIN+AR++         R+D+YIGVMIDDL +KG  E
Sbjct: 371 LYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP+G +LG I ++R   F    Q      + L+   
Sbjct: 431 PYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTR 490

Query: 483 LTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           L  K+    L +   +  +DG    A +FL  P+ + Q L    P+       VIE+++I
Sbjct: 491 LKPKDVNPWLEAHHFAPLKDGV--LASDFLKRPEINYQTLEQFLPENPTLDHRVIEQVEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++     ++K  E + IP   +Y ++  L+ E ++KL  ++P  + QAS+I
Sbjct: 549 QIKYAGYIAKEEASVAKLKRLEGKKIPARINYEAINGLATEARQKLVKIQPETIAQASRI 608

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+ PA + +L +YI++  +  
Sbjct: 609 SGVNPADVAILSVYIEQGRISK 630


>gi|256848512|ref|ZP_05553954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714779|gb|EEU29758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 645

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/626 (43%), Positives = 366/626 (58%), Gaps = 9/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 13  NYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG V
Sbjct: 73  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKLTIEKEPNLTLRQGTV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DDLIVEDGVCKGVITNTGARYGAKAVVLTVGTAARGKIIIGELQYESGPNNSKSATKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIEC 240
              +  FD  R KTGTP R++G TI +D+TE+Q  DE    FSF T          QI C
Sbjct: 193 CLERLGFDLERFKTGTPPRINGNTIHYDETEEQPGDEEPNHFSFDTPDSQYLALSDQISC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TNL TH +I  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 253 WLTYTNLHTHDLIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L PTLETKKI
Sbjct: 313 DTDEYYVDGLSTSMPEEIQQKMLHSVKGLEDAQLMRPGYAIEYDVVAPYQLHPTLETKKI 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGL+AGIN+ R++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKSPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R  +     Q        L+S
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMEKGHAIGLVSDERLAKMETKKQHVADEIKRLES 492

Query: 481 LVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERL 536
           L +  K  +   I    D     + TA   L  P  + Q L    P           E++
Sbjct: 493 LRIKPKTAADEFIQANGDNPLKDSLTAAALLRRPYVTYQKLLEFIPSPTTALDRQEAEQV 552

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  ++ ++   +K  E + IP + DY ++  L+ E ++KL  ++P  L QAS
Sbjct: 553 EIQIKYAGYIKKEEVKVNRLKRMEAKKIPANIDYEAIDGLATEGRQKLEKIRPETLAQAS 612

Query: 597 KIEGMTPAALNLLLIYIKKNTV-KLN 621
           +I G+ PA L +L +YI++  + K+N
Sbjct: 613 RISGVNPADLAILSVYIQQGRIAKIN 638


>gi|262376199|ref|ZP_06069429.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter lwoffii SH145]
 gi|262308800|gb|EEY89933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter lwoffii SH145]
          Length = 626

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLT GTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDAKTVVLTAGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPTMSFMGDVSMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNERTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R ++Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDEAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG ++G + + R   + + ++        L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTAIGREMGLVDDARWAVYCEKMEAVEKETGRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S  V E+++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELT--NSEVSPFVGEQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DFDY  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETRIPADFDYDIVSGLSREITLKLKDVRPETLAQASRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN  
Sbjct: 603 GVTPAAVQLVMITIRKNAQ 621


>gi|269798907|ref|YP_003312807.1| glucose inhibited division protein A [Veillonella parvula DSM 2008]
 gi|269095536|gb|ACZ25527.1| glucose inhibited division protein A [Veillonella parvula DSM 2008]
          Length = 623

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 372/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  IV +         ++L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDDKVIGIVTELGEFYGAKAIILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWIQGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F            +L++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADLRLTEKGREIGLVKDDRWAKFTAKKAAIEEAMDMLRNTPVN 485

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +      +          AY+ +   + S   +       ++++  V E + I  +
Sbjct: 486 PSKETQVLLEGLGTAPIRTGIHAYDLVKRNELSYAIVADAF-GLKRYTPDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|86136757|ref|ZP_01055335.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
 gi|85826081|gb|EAQ46278.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
          Length = 627

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/620 (53%), Positives = 430/620 (69%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DV+VIGGGHAG EAA  AA++G  TALIT     IG MSCNPAIGGLGKGHLVREI
Sbjct: 6   HSDFDVVVIGGGHAGTEAAHAAARMGVRTALITLTREGIGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+MG+VAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M +    QENL++I+G
Sbjct: 66  DAMDGVMGKVADLAGIQFRLLNRRKGPAVQGPRAQSDRGIYRREMLKRTDVQENLEIIEG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E   F  +   +  +V+ D S IR   V+LTTGTFLRGVIHIG +  P GRMGD PS  L
Sbjct: 126 EATDFLMQGTAVQGVVLADGSEIRSRFVILTTGTFLRGVIHIGDVSKPGGRMGDRPSVKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 F    GRLKTGTP RLDG+TI WD  E Q  DE    FSFMT +++ +Q+ CGI
Sbjct: 186 AERLDSFKLPMGRLKTGTPPRLDGRTINWDILEGQPGDEDPTFFSFMTKELSAKQVVCGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPEG   
Sbjct: 246 THTNEKTHEIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQIFLEPEGATD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q  ++R+I GLEK  I++PGYAIEYDYI+P+ L   L  K + G
Sbjct: 306 HTVYPNGISTSLPVDVQADYVRSIVGLEKAEILQPGYAIEYDYIDPRALSLDLSLKDVPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+++A K  + + + F R++SYIGVMIDDLT+ GV E
Sbjct: 366 LYLAGQINGTTGYEEAAAQGLVAGLSAAAKCREQEPVMFGRSNSYIGVMIDDLTTHGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLTP+ ++ GCI E R+  F   ++    +R+ ++  V
Sbjct: 426 PYRMFTSRAEFRLSLRADNADQRLTPLAIEAGCISEERKTAFTAKMEHLADIRAKMEDGV 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K +S   I   QDG  RT +E L++PD   ++L  + P+    SS +  +L+ ++ Y
Sbjct: 486 FTPKQISEAGIYVNQDGNKRTGFEVLAFPDVCFEDLVPLLPECAHASSDIRRQLERDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  E   +K +E  +IP +FDY S+  LS EL++KLS  +P  L +AS+I GMT
Sbjct: 546 VHYIARQEKEIAAVKRDEGYVIPPEFDYGSIDGLSAELQQKLSTTRPETLAKASRINGMT 605

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA L L+L  ++KN+    +
Sbjct: 606 PAGLALVLARLRKNSRSQEK 625


>gi|325663375|ref|ZP_08151825.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086947|ref|ZP_08336023.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470829|gb|EGC74059.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330409608|gb|EGG89047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 640

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/622 (43%), Positives = 380/622 (61%), Gaps = 5/622 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y + VIG GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLV+E+DAL
Sbjct: 15  YGIAVIGAGHAGCEAALAAARLGVRTIMFTVSVDSIALMPCNPNIGGSSKGHLVKEVDAL 74

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ +  QENLD+ Q EV 
Sbjct: 75  GGEMGKVIDRTFIQSKMLNKSKGPAVHSLRAQADKARYSTEMRKVLEQQENLDIKQAEVT 134

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++ +     ++  C  VVL TGT+L+     G++    G  G   +N L + 
Sbjct: 135 EILVENGKVTGVKTFSGAVYHCDAVVLCTGTYLKSRCIYGEVSENCGPNGLKAANYLSDC 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
             +      R KTGTPAR+D  +I + K E+QF DER++PFSF T  +++   Q+ C +T
Sbjct: 195 LKELGVQMYRFKTGTPARIDRNSIDFTKMEEQFGDERVVPFSFTTNPEEVQIDQVSCWLT 254

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL+T+
Sbjct: 255 YTNERTHEIIRENLDRSPLFSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGLDTN 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+S++LPE++Q++  R++PGLE   I+R  YAIEYD I+ ++L+ TLE KKISGL
Sbjct: 315 EMYIGGMSSSLPEDVQYEMYRSVPGLEHAKIVRNAYAIEYDCIDARQLYATLEFKKISGL 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQ NG++GYEEAAAQGLVAGIN+ARK    + I   R+  YIGV+IDDL +K   EP
Sbjct: 375 FSGGQFNGSSGYEEAAAQGLVAGINAARKVLGKEQIIIDRSQGYIGVLIDDLVTKESHEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLT IG ++G I E R K   K  ++       L+   +
Sbjct: 435 YRMMTSRAEYRLLLRQDNADQRLTEIGYQVGLIDEERYKNLKKKERQIEEQVERLEHTNV 494

Query: 484 TSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            +       +            T  E +  P+ S + L +I P   + S  V+E++ I  
Sbjct: 495 GASRPVQEVLEQYGSTPLKNGITLAELIRRPELSYEALEAIDPGRTELSEEVVEQINIRI 554

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQM + ++ K  E + IP   +Y  + +L  E K+KL+  +P ++ QAS+I G
Sbjct: 555 KYDGYIRRQMKQVEQFKKLETKRIPDAINYDEIGSLRIEAKQKLNQYRPISIGQASRISG 614

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LL+Y++    K  +
Sbjct: 615 VSPADISVLLVYMESYGSKREK 636


>gi|254522439|ref|ZP_05134494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas sp. SKA14]
 gi|219720030|gb|EED38555.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas sp. SKA14]
          Length = 629

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/620 (45%), Positives = 382/620 (61%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIVIGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EID
Sbjct: 6   HRYDVIVIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  Q NL V Q  
Sbjct: 66  ALGGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGQANLTVFQAA 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L 
Sbjct: 126 VDDLVIEGDAVRGVITQTGLRFDAEAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + Q + C I
Sbjct: 186 ARLRERPFQVDRLKTGTPPRIDGRSLDYSVMDEQPGDTPRPVMSFLGSVDEHPQQVSCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL  
Sbjct: 246 THTTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGI 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++G
Sbjct: 306 VEIYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP G ++G + +RR   F          R+ L +L 
Sbjct: 426 PYRMFTSRAEYRLQLREDNADQRLTPAGREMGLVDDRRWSAFETKQAAVAAERARLGALW 485

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
            T  N     +         +     + +  P+     L  +           V E+++I
Sbjct: 486 ATPANALGREVQDTLGVAVSRETNVLDLIKRPELDYAQLMQVPSLGPAVADGKVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  + QA +I
Sbjct: 546 GVKYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTIGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            GMTPAA++LLL+++++   
Sbjct: 606 PGMTPAAISLLLVHLERARR 625


>gi|172037374|ref|YP_001803875.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. ATCC 51142]
 gi|171698828|gb|ACB51809.1| glucose inhibited division protein A [Cyanothece sp. ATCC 51142]
          Length = 634

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/622 (42%), Positives = 372/622 (59%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDSFDIIVVGAGHSGCEAALAAARLGCRTLMLTLNLDRIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQENLSIRE 128

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V       N  +  I     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 GMVTDLVLGNNDEVIGIQTYFGTCFEAKAVILTTGTFLGGRIWIGNKSMEAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            L ++     F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF     +  +Q+ 
Sbjct: 189 GLTDTLNDLGFETGRLKTGTPARVDKRSVDYSQLEPQPPDEEVRWFSFDPYVWVEKKQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTSKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE IQ   +RT+PGLE   ++RP YA+EYD++   + +PTL TKK
Sbjct: 309 REIPELYIQGFSTGLPENIQLAMLRTLPGLENCVMLRPAYAVEYDFLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAGIN+ +  N  + I F R +SY+G +IDDL +K 
Sbjct: 369 IQGLFCAGQVNGTTGYEEAAAQGIVAGINAVKFVNNEEMIIFPREESYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G K+G I +RR   F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRMTPLGRKIGLIDDRRWALFEQKQANIVAEKERLY 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +  ++  +  I   + ++   + T  + L  P F  Q+L       +  + +  E  
Sbjct: 489 ETRIKERDEVAIKIVNDTQQKIKGSATLADLLRRPKFHYQHLEQYGLGNKDLTIVEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ I+  +I     + +P D DY ++  LS E +EKL+ ++P  L QAS
Sbjct: 549 EIDIKYSGYLKRQQIQIDQITRHSNKKLPSDLDYMTIDTLSMEAREKLTKVRPLTLGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +N LL+Y++  + 
Sbjct: 609 RIGGVNPADINALLVYLELRSR 630


>gi|256761832|ref|ZP_05502412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T3]
 gi|256683083|gb|EEU22778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T3]
          Length = 632

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q Q + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTQMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|256843836|ref|ZP_05549323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 125-2-CHN]
 gi|256613741|gb|EEU18943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 125-2-CHN]
          Length = 632

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 307 TTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R  RF +        ++ L  
Sbjct: 427 NEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDAKTRLHE 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +       V E+++
Sbjct: 487 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YIK   
Sbjct: 607 ISGVNPADLAILSVYIKNGR 626


>gi|325265450|ref|ZP_08132173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. D5]
 gi|324029308|gb|EGB90600.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. D5]
          Length = 630

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/617 (43%), Positives = 376/617 (60%), Gaps = 5/617 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE+DA
Sbjct: 14  EYDIAVVGAGHAGCEAALAAARLGFKTVIFTVSVDSIALMPCNPNIGGSSKGHLVREVDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+NLD+ Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKANYSRTMRQVLQNQKNLDIRQMEV 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  ++ +     ++ RC  VVL TGT+L+     G +    G  G   +N L +
Sbjct: 134 TDILAEEGRVTGVQTYSGAIYRCRAVVLCTGTYLKARCIYGDISTYTGPNGLQAANHLTD 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S         R KTGTPAR+D  ++ + K E+Q  DER++PFSF TD   +   Q  C +
Sbjct: 194 SLKSLGIKMYRFKTGTPARIDKNSVDFSKMEEQKGDERVVPFSFTTDPEAVQIEQASCWL 253

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEGL T
Sbjct: 254 TYTNQNTHDIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFSDKNRHQVFIEPEGLET 313

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q+   R++PGLE V I+R  YAIEYD I+ ++L  TLE K + G
Sbjct: 314 NEMYVGGMSSSLPEDVQYAMYRSVPGLENVKIVRNAYAIEYDCIDARQLKSTLEFKNVEG 373

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF  GQ NG++GYEEAAAQGLVAGIN+ARK  +   I   R+  Y+GV+IDDL +K   E
Sbjct: 374 LFSGGQFNGSSGYEEAAAQGLVAGINAARKLQEKQGIVIDRSQGYVGVLIDDLVTKESHE 433

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RLT +G ++G + E R ++              ++   
Sbjct: 434 PYRMMTSRAEYRLLLRQDNADLRLTKLGYEVGLVDEERYQKLLDKENMIEEEIRRVEHTN 493

Query: 483 L-TSKNLSSTSISF--KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           + TS+ + S   S+         T  E +  P+ S + L  I    ++    V E++ I 
Sbjct: 494 IGTSEEVQSLLESYGSTPLTSGTTLAELIRRPELSYEALAPIDRQRKELPFDVEEQVNIN 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + ++ K  E R+IP D DY+ + +L  E K+KL+ ++P ++ QAS+I 
Sbjct: 554 IKYDGYIRRQQRQVEQFKKLETRIIPDDLDYNDVKSLRIEAKQKLTEMRPSSIGQASRIS 613

Query: 600 GMTPAALNLLLIYIKKN 616
           G++PA +++LL+Y++  
Sbjct: 614 GVSPADISVLLVYLESR 630


>gi|256957037|ref|ZP_05561208.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DS5]
 gi|257078714|ref|ZP_05573075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis JH1]
 gi|294781226|ref|ZP_06746573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis PC1.1]
 gi|307268890|ref|ZP_07550255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4248]
 gi|256947533|gb|EEU64165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DS5]
 gi|256986744|gb|EEU74046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis JH1]
 gi|294451689|gb|EFG20144.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis PC1.1]
 gi|306514806|gb|EFM83356.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4248]
 gi|315033581|gb|EFT45513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0017]
 gi|315036246|gb|EFT48178.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0027]
 gi|329577013|gb|EGG58488.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1467]
          Length = 632

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAAIAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|256370459|ref|YP_003107970.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
 gi|256000622|gb|ACU49021.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
          Length = 636

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A  ++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQHVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|190576265|ref|YP_001974110.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas maltophilia K279a]
 gi|190014187|emb|CAQ47831.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme GidA [Stenotrophomonas maltophilia K279a]
          Length = 629

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 383/620 (61%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIVIGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EID
Sbjct: 6   HRYDVIVIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  Q+NL V Q  
Sbjct: 66  ALGGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGQDNLTVFQAA 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L 
Sbjct: 126 VDDLVIEGDAVRGVITQTGLRFDAGAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + Q + C I
Sbjct: 186 ARLRERPFQVDRLKTGTPPRIDGRSLDYGVMDEQPGDSPRPVMSFLGSVDEHPQQVSCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL  
Sbjct: 246 THTTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGI 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++G
Sbjct: 306 VEIYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP G ++G + + R   F          R+ L +L 
Sbjct: 426 PYRMFTSRAEYRLQLREDNADQRLTPAGREMGLVDDHRWSAFETKQAAVAAERARLGALW 485

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
            T  N     +         +     + +  P+     L  +         + V E+++I
Sbjct: 486 ATPANALGREVQDTLGVAVSRETNVLDLIKRPELDYAQLMQVPSLGPAVADAKVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  + QA +I
Sbjct: 546 GVKYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTIGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            GMTPAA++LLL+++++   
Sbjct: 606 PGMTPAAISLLLVHLERARR 625


>gi|29377752|ref|NP_816906.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis V583]
 gi|227518133|ref|ZP_03948182.1| glucose-inhibited division protein A [Enterococcus faecalis TX0104]
 gi|227555661|ref|ZP_03985708.1| glucose-inhibited division protein A [Enterococcus faecalis HH22]
 gi|229547153|ref|ZP_04435878.1| glucose-inhibited division protein A [Enterococcus faecalis TX1322]
 gi|229550723|ref|ZP_04439448.1| glucose-inhibited division protein A [Enterococcus faecalis ATCC
           29200]
 gi|255971527|ref|ZP_05422113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T1]
 gi|256618549|ref|ZP_05475395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ATCC 4200]
 gi|256960900|ref|ZP_05565071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Merz96]
 gi|257081325|ref|ZP_05575686.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis E1Sol]
 gi|257083983|ref|ZP_05578344.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Fly1]
 gi|257087813|ref|ZP_05582174.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Enterococcus faecalis D6]
 gi|257088458|ref|ZP_05582819.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis CH188]
 gi|257417402|ref|ZP_05594396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis AR01/DG]
 gi|257418863|ref|ZP_05595857.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Enterococcus faecalis T11]
 gi|257421322|ref|ZP_05598312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|293384793|ref|ZP_06630640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis R712]
 gi|293388149|ref|ZP_06632673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis S613]
 gi|307277335|ref|ZP_07558433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2134]
 gi|307286636|ref|ZP_07566726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0109]
 gi|312902970|ref|ZP_07762159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0635]
 gi|312908838|ref|ZP_07767777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 512]
 gi|312979520|ref|ZP_07791202.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 516]
 gi|81170540|sp|Q82YX0|MNMG_ENTFA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29345220|gb|AAO82976.1| glucose-inhibited division protein A [Enterococcus faecalis V583]
 gi|227074401|gb|EEI12364.1| glucose-inhibited division protein A [Enterococcus faecalis TX0104]
 gi|227175214|gb|EEI56186.1| glucose-inhibited division protein A [Enterococcus faecalis HH22]
 gi|229304156|gb|EEN70152.1| glucose-inhibited division protein A [Enterococcus faecalis ATCC
           29200]
 gi|229307735|gb|EEN73722.1| glucose-inhibited division protein A [Enterococcus faecalis TX1322]
 gi|255962545|gb|EET95021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis T1]
 gi|256598076|gb|EEU17252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ATCC 4200]
 gi|256951396|gb|EEU68028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Merz96]
 gi|256989355|gb|EEU76657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis E1Sol]
 gi|256992013|gb|EEU79315.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis Fly1]
 gi|256995843|gb|EEU83145.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Enterococcus faecalis D6]
 gi|256997270|gb|EEU83790.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis CH188]
 gi|257159230|gb|EEU89190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis ARO1/DG]
 gi|257160691|gb|EEU90651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Enterococcus faecalis T11]
 gi|257163146|gb|EEU93106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|291077924|gb|EFE15288.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis R712]
 gi|291082457|gb|EFE19420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis S613]
 gi|295112326|emb|CBL30963.1| glucose-inhibited division protein A [Enterococcus sp. 7L76]
 gi|306502265|gb|EFM71547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0109]
 gi|306505969|gb|EFM75141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2134]
 gi|310625276|gb|EFQ08559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 512]
 gi|310633638|gb|EFQ16921.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0635]
 gi|311287702|gb|EFQ66258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis DAPTO 516]
 gi|315026594|gb|EFT38526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2137]
 gi|315148302|gb|EFT92318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4244]
 gi|315152697|gb|EFT96713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0031]
 gi|315155023|gb|EFT99039.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0043]
 gi|315158702|gb|EFU02719.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0312]
 gi|315165649|gb|EFU09666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1302]
 gi|315174207|gb|EFU18224.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1346]
 gi|315576169|gb|EFU88360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0309B]
 gi|315579748|gb|EFU91939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0630]
 gi|315582979|gb|EFU95170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0309A]
 gi|323479217|gb|ADX78656.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis 62]
 gi|327536409|gb|AEA95243.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis OG1RF]
          Length = 632

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|17986291|ref|NP_538925.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 1 str. 16M]
 gi|17981873|gb|AAL51189.1| glucose inhibited division protein a [Brucella melitensis bv. 1
           str. 16M]
          Length = 658

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/610 (57%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 31  FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRL+MQ+ I  QENL V++G  A
Sbjct: 91  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLSMQQMITEQENLTVVEGGAA 150

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 151 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 210

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 211 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 270

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG R+GHQIFLEPEGL+ D V
Sbjct: 271 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGNRDGHQIFLEPEGLDDDTV 330

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 331 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 390

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 391 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 450

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 451 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 510

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 511 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 570

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+TPAA
Sbjct: 571 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGITPAA 630

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 631 VALLIAQIRK 640


>gi|50085525|ref|YP_047035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ADP1]
 gi|81170512|sp|Q6F9Q1|MNMG_ACIAD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49531501|emb|CAG69213.1| glucose-inhibited division protein A [Acinetobacter sp. ADP1]
          Length = 626

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 388/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRYKAAIRHTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG  K   GR GD PS +L 
Sbjct: 125 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLEKSSGGRAGDPPSIALS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVSCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDQAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++      + L  L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVETETARLAHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S+ V ++++I 
Sbjct: 485 AAPNNPMGKQFVEMTGADLSKECSAIDLLKRPNINFTQIAELTG--SQVSTQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QA +I 
Sbjct: 543 VKYEGYINRQHEDVAQLKRLEETKIPADFDYDIVSGLSREITQKLKTVRPETLAQAHRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN  
Sbjct: 603 GVTPAAVQLVMITIRKNAQ 621


>gi|315168441|gb|EFU12458.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1341]
          Length = 632

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|302877169|ref|YP_003845802.1| glucose inhibited division protein A [Clostridium cellulovorans
           743B]
 gi|307687868|ref|ZP_07630314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium cellulovorans 743B]
 gi|302580026|gb|ADL54038.1| glucose inhibited division protein A [Clostridium cellulovorans
           743B]
          Length = 628

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/623 (43%), Positives = 379/623 (60%), Gaps = 3/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAG EAA  AA++G +T L T    ++G M CNP IGG  KGHLVRE
Sbjct: 4   FGGEYDVVVVGAGHAGVEAALAAARMGMNTLLTTINLDSVGFMPCNPNIGGTAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ R+LN  KGPAV   R QAD++ Y   M+R +   +NL++ Q
Sbjct: 64  IDALGGEMGVNIDKTFIQSRMLNTSKGPAVHSLRAQADKKRYSDEMKRVVEGTDNLNLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   + E   +  +  ++ +  +   VVL TGT+L+  + IG +   +G  G  P++ 
Sbjct: 124 IEVTAIDVEDGKVVGVQTRNGAYFKTKAVVLATGTYLKAKVIIGDVSYHSGPNGLQPADD 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S +    +  R KTGTPAR+  K++ + K  +Q  DE++ PFSF  D +   QI C 
Sbjct: 184 LSQSLLDIGVELRRFKTGTPARISSKSVDFSKMIEQPGDEKITPFSFQNDYLERDQISCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ET  +I  NI  S +Y+G I   GPRYCPSIEDKI+RF +++ HQ+F+EPEG N
Sbjct: 244 LTYTNEETQNVIKANIDRSPLYNGSIVGTGPRYCPSIEDKIMRFPDKDRHQVFIEPEGEN 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD INP +L  +LE K I+
Sbjct: 304 TDEMYVGGMSSSLPEDVQIAMYRTVPGLENVEILRTAYAIEYDSINPLQLKLSLEFKNIN 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NG++GYEEAA QGL+AGIN+  K    + +   R+D YIGV+IDDL +KG  
Sbjct: 364 GLFGAGQLNGSSGYEEAACQGLIAGINAVLKIRGEEPLILKRSDGYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT +G K+G + + R ++F             +KSL
Sbjct: 424 EPYRMMTSRAEYRLLLRQDNADLRLTELGRKVGLVSDERFEKFLSRKNAIEIELERIKSL 483

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +T+K   N    SI      K  + YE +  P+     + ++  D  +    V E++ I
Sbjct: 484 QITNKTSVNEFLESIGSVALRKPISLYELIKRPELDYYKVEALDVDRSELLDSVKEQVNI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  +Q+ + ++ K  E R IP+D +Y+ +  L  E  +KL    P N+ QAS+I
Sbjct: 544 AAKYEGYIEKQLEQVEQFKKFENRRIPEDINYNDIKGLRIEAIQKLQKTNPINIGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G++PA +++LLIY+++     N
Sbjct: 604 SGVSPADVSVLLIYMEQLNANKN 626


>gi|254718103|ref|ZP_05179914.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. 83/13]
 gi|265983056|ref|ZP_06095791.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. 83/13]
 gi|306839728|ref|ZP_07472530.1| glucose-inhibited division protein A [Brucella sp. NF 2653]
 gi|264661648|gb|EEZ31909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. 83/13]
 gi|306405188|gb|EFM61465.1| glucose-inhibited division protein A [Brucella sp. NF 2653]
          Length = 636

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/610 (57%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA 
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAF 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADKAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLIVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLVDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MT++IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTNRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGL K  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLGKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGHYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPITREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|306843477|ref|ZP_07476078.1| glucose-inhibited division protein A [Brucella sp. BO1]
 gi|306276168|gb|EFM57868.1| glucose-inhibited division protein A [Brucella sp. BO1]
          Length = 636

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/610 (57%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYR AMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRHAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLVDGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG+I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGNIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP+++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPKDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLAREAALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
               +  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGNYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A + +GMTPAA
Sbjct: 549 MERQQSDIAIMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRADGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|22298078|ref|NP_681325.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosynechococcus elongatus BP-1]
 gi|34222556|sp|Q8DLF8|MNMG_THEEB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|22294256|dbj|BAC08087.1| glucose inhibited division protein [Thermosynechococcus elongatus
           BP-1]
          Length = 637

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/629 (42%), Positives = 374/629 (59%), Gaps = 5/629 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  LV E
Sbjct: 7   FQDEFDVIVVGAGHAGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLVHE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +GRV+D   +Q R+LN  +GPAV   R Q D+  Y   M++ + +Q NL V +
Sbjct: 67  VDALGGEIGRVSDRTYVQKRLLNASRGPAVWALRAQTDKREYSAVMKQVVENQPNLLVRE 126

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V     +  + +  +        RC  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 127 GMVTDLVLDANDTVIGVETYFGVAFRCQAVILTTGTFLGGRIWVGNKSMPAGRAGEFAAE 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            L  +  +  F+  RLKTGTPAR+D +++ + K E Q  DE++  FSF  T  +   Q+ 
Sbjct: 187 GLSQTLARLGFEVDRLKTGTPARVDRRSVDYSKMEPQPPDEQVRWFSFDPTVWVERPQMN 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I E++  + +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 247 CYLTRTTPETHRLIREHLHLTPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y  G ST LPE +Q Q +RT+PGLE   ++RP YA+EYDY+   + FPTL TKK
Sbjct: 307 RNTPELYIQGFSTGLPEPLQLQLLRTLPGLENCIMLRPAYAVEYDYLPATQCFPTLMTKK 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+AR   +   I F R +SYIG +IDDL +K 
Sbjct: 367 IQGLFCAGQINGTTGYEEAAAQGIVAGINAARFVQRKPMITFPRQESYIGTLIDDLCTKE 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G + E + + F    +        L+
Sbjct: 427 LREPYRMLTSRSEYRLVLRSDNADQRLTPLGYEIGLVSEAQWQVFQAKQRRLAAETQRLQ 486

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  + +      +I   + +         E L       + L          +    E +
Sbjct: 487 TTRIKAHEPVGEAIVTATGQAIKSAIALEELLRRSGVHYELLDRHGLGNPDLTPQEKEAV 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   YA Y  RQ  E ++I  +E+R +P D DY ++P LS E +EKLS ++P  + QAS
Sbjct: 547 EIAIKYAGYIERQQREIEQIARQEQRPLPVDLDYFAIPTLSMEAREKLSAIRPLTIGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           +I G+ PA +N LL+Y++    + +   +
Sbjct: 607 RIGGVNPADINALLVYLQVQQQRQSLTAV 635


>gi|303228569|ref|ZP_07315396.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516748|gb|EFL58663.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 623

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/619 (41%), Positives = 374/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALACARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M+  + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKHTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGTKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEQFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNIENMAVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIKSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F           +LL++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLVKDDRWAKFTAKKAAIEEGMALLRNTPVN 485

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+          AY+ +   + S   +       ++F+  V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIKTGIHAYDLVKRNELSYATVADAF-GLKRFTPDVEEAMDIAIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM + ++++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMEQVEKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|218438725|ref|YP_002377054.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 7424]
 gi|218171453|gb|ACK70186.1| glucose inhibited division protein A [Cyanothece sp. PCC 7424]
          Length = 634

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/622 (41%), Positives = 366/622 (58%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+D+IV+G GH+GCEAA   A+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDSFDLIVVGAGHSGCEAALATARLGCRTLMLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNASRGPAVWALRAQTDKREYAAVMKQIVENQENLVIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G        + + +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 GMATDLVLGKNDEVIGVQTYFGTCFAAKAVILTTGTFLGGRIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE++  FSF  +  +   Q+ 
Sbjct: 189 GLTETLNQLGFETGRLKTGTPARVDKRSVDYSKLEPQPPDEQVGWFSFDPEVWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAKTHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE IQ   + T+PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENIQLAMLHTLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAGIN+ R       I F R +SYIG ++DDL +K 
Sbjct: 369 IEGLFCAGQVNGTTGYEEAAAQGIVAGINAVRFIKGQSMIVFPREESYIGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLFQQKQANIIAEKERLH 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +   +    +I   + ++   +    + L  P F   NL          +    E  
Sbjct: 489 ETRIKENDELGKAIVADTGQKIKGSICLADLLRRPGFHYVNLEHYGLGNLNLTPAEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  + ++I     R + ++ DY  +  LS E +EKL+ +KP  + QAS
Sbjct: 549 EIDIKYSGYIKRQQNQIEQISRHSHRPLSENLDYMKIDTLSMEAREKLTKVKPLTIGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +N LL+Y++  + 
Sbjct: 609 RIGGVNPADINALLVYLETRSR 630


>gi|227893843|ref|ZP_04011648.1| glucose-inhibited division protein A [Lactobacillus ultunensis DSM
           16047]
 gi|227864332|gb|EEJ71753.1| glucose-inhibited division protein A [Lactobacillus ultunensis DSM
           16047]
          Length = 632

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/620 (42%), Positives = 360/620 (58%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FSF +        QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSFESRDADYLKHQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + +++G IK  GPRYCPSIEDK+VRF ++N HQIFLEPEG 
Sbjct: 247 WMTYTNPVTHEIIRNNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKNRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD I P +L  TLETKK+
Sbjct: 307 TTKEVYVGDFSTSMPEEVQLKMVHSVAGLEHAELMRPGYAIEYDVIEPWQLKHTLETKKL 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R KRF +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRTDNADLRLTEYGHQLGLISDERYKRFEEKKQAIRDAKERLHG 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +  K    V E+++
Sbjct: 487 ITVHLTDEVQEFLKSIGQEPMKAGVKADVFLRRPNVTIDDIERLTGEKIKGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|315163424|gb|EFU07441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0645]
          Length = 632

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|298491295|ref|YP_003721472.1| glucose inhibited division protein A ['Nostoc azollae' 0708]
 gi|298233213|gb|ADI64349.1| glucose inhibited division protein A ['Nostoc azollae' 0708]
          Length = 646

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/627 (42%), Positives = 368/627 (58%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDAYDVIVVGAGHSGCEAALATARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKRKYAAVMKGIVENQENLTIRE 128

Query: 122 GEVAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G V          II  +         C  V+LTTGTFL G I +G   + AGR G+  +
Sbjct: 129 GMVTDLVLGANDEIIIGVETYFGVAFECKAVILTTGTFLGGKIWVGNKSMEAGRAGEFAA 188

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQI 238
             L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF   + +   QI
Sbjct: 189 LGLTETLNRLGFETGRLKTGTPARVDKRSVNYSKMEIQPGDEEVRWFSFDPQEWVEREQI 248

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +TRT  ETHR+I EN+  S +Y G +++ GPRYCPSIEDKIVRF +   HQIF+EPE
Sbjct: 249 PCHMTRTTKETHRLIQENLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADTESHQIFIEPE 308

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N   +Y  G ST LPE +Q   +R++PGLE   ++RP YA+EYDY+   + +PTL TK
Sbjct: 309 GRNIPELYIQGFSTGLPENLQLLMLRSLPGLENCLMLRPAYAVEYDYLPGTQCYPTLMTK 368

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           K+ GLF AGQINGTTGYEEAAAQGLVAGIN+AR     + I F R  SYIG ++DDL +K
Sbjct: 369 KVEGLFCAGQINGTTGYEEAAAQGLVAGINAARFVRGEEIIIFPREQSYIGTLVDDLCTK 428

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            + EPYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F    ++    +  L
Sbjct: 429 DLREPYRMLTSRSEYRLLLRSDNADQRMTPLGREIGLIDDRRWDLFTSKQKQIVAEKERL 488

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            S  +        +I+         + +  + L  P     +L          +    E 
Sbjct: 489 YSTRIKEHEEVGRAIAQNTQQAIKGSISLADLLRRPGIHYIDLERYALGNTSLNQAEKEG 548

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y+ Y  RQ  + ++I  +  R +P D DY+++  LS E +EKL+ +KP  + QA
Sbjct: 549 AEIDIKYSGYLARQQNQIEQIARQVNRSLPVDLDYAAIDTLSKEAREKLNKVKPLTIGQA 608

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++I G+ PA +N LLIY++    K  +
Sbjct: 609 ARIGGVNPADINALLIYLEIRKTKGQK 635


>gi|58338214|ref|YP_194799.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus NCFM]
 gi|227902599|ref|ZP_04020404.1| glucose-inhibited division protein A [Lactobacillus acidophilus
           ATCC 4796]
 gi|81170549|sp|Q5FHQ6|MNMG_LACAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58255531|gb|AAV43768.1| glucose inhibited division protein A [Lactobacillus acidophilus
           NCFM]
 gi|227869688|gb|EEJ77109.1| glucose-inhibited division protein A [Lactobacillus acidophilus
           ATCC 4796]
          Length = 632

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/620 (41%), Positives = 359/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEYMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELMYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKVPRHFSYESKDENYLQNQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I +N+  + +++G IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNPVTHEVIRDNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 307 TTKEVYVGDFSTSMPEEVQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQGKSGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G KLG I + R + F +  Q     ++ L  
Sbjct: 427 NEPYRLLTSRAEYRLILRHDNADLRLTEYGHKLGLISDDRYQAFEEKKQAIKDTQARLHE 486

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P  +I ++  +          V E+++
Sbjct: 487 ITVHVTDEVQDFLKSIGQEPMKAGVKADVFLRRPHVTINDIERLTGQKIDGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY+ +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYNMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|256545943|ref|ZP_05473298.1| glucose inhibited division protein A [Anaerococcus vaginalis ATCC
           51170]
 gi|256398365|gb|EEU11987.1| glucose inhibited division protein A [Anaerococcus vaginalis ATCC
           51170]
          Length = 639

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/619 (42%), Positives = 376/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ +YDV+V+G GHAGCEA   +A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 15  IDEAYDVVVVGAGHAGCEAGLASARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + +QENLD+ +
Sbjct: 75  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLENQENLDLFE 134

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + S+     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 135 QEVDKINIEDGKVKSVETIQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 194

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L +S  +  F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+ +       +Q 
Sbjct: 195 LSDSLEQLGFSLRRFKTGTPARVDKKSLDLSKTEIQKGDENVVAFSFLNEDKDFSDKKQE 254

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN+  S +Y+G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 255 ACYLTYTTEKTKEIIMENLDRSPMYAGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 314

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 315 SLSTDEMYIQGVSSTLPQEVQKEFYKTIEGLENCKIIRPAYGIEYDCLDSTNLKRSLESK 374

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGL+AGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 375 EIENLFFAGQINGSSGYEEAAGQGLIAGINAALKLRGEDALILDRSDAYIGVLIDDLVTK 434

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSR EYR+++R DNAD RLT  G ++G + + R ++     +      S L
Sbjct: 435 GTNEPYRMMTSRCEYRLTMRQDNADFRLTEKGHEIGLVSDERYEKMVVKRENIEKEISRL 494

Query: 479 KSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K+++++    ++     I         + ++ +  P+ + + L  + PD  +       +
Sbjct: 495 KNVMISPNEENNEILEKIGSNPIKTGYSLFDLIKRPELTYKKLEVLDPDRPELPKFQQIQ 554

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DYS +  L  E  EKL+ +KP ++ QA
Sbjct: 555 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDIDYSKINGLKKESAEKLNKIKPDSIGQA 614

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 615 SRISGVSPADINVLLIRLK 633


>gi|209525128|ref|ZP_03273672.1| glucose inhibited division protein A [Arthrospira maxima CS-328]
 gi|209494537|gb|EDZ94848.1| glucose inhibited division protein A [Arthrospira maxima CS-328]
          Length = 637

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/625 (42%), Positives = 374/625 (59%), Gaps = 9/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +++IV+GGGH+GCEAA  +A+LG  T L+T     IG   CNPA+G   K  L  E
Sbjct: 9   FQEEFEIIVVGGGHSGCEAALASARLGCRTLLLTLNLDKIGWQPCNPAVGAPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M++ + +QENL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRLLNNSRGPAVWALRAQTDKREYAAVMRQIVENQENLSIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V        + I  +         C  ++LTTGTFL G+I +G   +PAGR G+  + 
Sbjct: 129 GMVTDLVLGLNDEIIGVKTYFGVAFACKALILTTGTFLGGIIWVGNKSMPAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L ++  +  F+TGRLKTGTPAR+D +++ +   E Q  DER+  FSF  +  +   Q+ 
Sbjct: 189 GLTDTLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDERVRWFSFDPEVWVEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTAETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE++Q + +R++PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 309 RHIPELYIQGFSTGLPEKLQLEMLRSLPGLENCVMLRPAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+ +     D I F R  SYIG +IDDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAVKLVRGEDMIVFPREQSYIGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADRRLTPLGREIGLIDDRRWELFQQKQANIIAEKQRLD 488

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +  K      I+   D +     + +  E L  P F   NL        + S    E
Sbjct: 489 QTRV--KERDEIGIAIASDTQQKIKGSISLAELLRRPGFHYGNLEHYHLGNSQLSLEEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +IE  Y+ Y  RQ  +  +I     R +P+D DY ++  LS E +EKL+ +KP  + Q
Sbjct: 547 GAEIEIKYSGYMERQQNQIDQISRHANRQLPRDLDYLTIETLSMESREKLNRIKPLTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+ PA +N LLIY++    +
Sbjct: 607 ASRIGGVNPADINALLIYLEVRHRQ 631


>gi|256854959|ref|ZP_05560320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus faecalis T8]
 gi|307296565|ref|ZP_07576386.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0411]
 gi|256709472|gb|EEU24519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Enterococcus faecalis T8]
 gi|306495992|gb|EFM65579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0411]
 gi|315030088|gb|EFT42020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX4000]
          Length = 632

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 370/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCCGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+  K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINATLKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|300861596|ref|ZP_07107680.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TUSoD Ef11]
 gi|300849057|gb|EFK76810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TUSoD Ef11]
 gi|315143560|gb|EFT87576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX2141]
          Length = 632

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTLDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|270289897|ref|ZP_06196123.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici 7_4]
 gi|304385850|ref|ZP_07368194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici DSM 20284]
 gi|270281434|gb|EFA27266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici 7_4]
 gi|304328354|gb|EFL95576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus acidilactici DSM 20284]
          Length = 635

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/625 (43%), Positives = 373/625 (59%), Gaps = 12/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M++ I ++ NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +     +VVLT GT  RG I IG+L+  +G      +  L 
Sbjct: 130 VDDLIVEDGVCKGVITNTGARYHAKSVVLTLGTAARGKIIIGELQYSSGPNNSQAALELT 189

Query: 184 NSF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQI 238
            +   K+ F+  R KTGTP R+DG TI + +TE+Q  DE    FSF T          Q+
Sbjct: 190 KNLTEKYHFELERFKTGTPPRVDGGTIHYAETEEQPGDEEPNHFSFQTPDSKYLELKNQL 249

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPE
Sbjct: 250 SCWLTYTNEKTHEIIRENLSRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQLFLEPE 309

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  TD  Y  G+ST++PEE+Q Q + +I GLE   ++RPGYAIEYD + P +L  TLETK
Sbjct: 310 GRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKNTLETK 369

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  L+ AGQ NGT+GYEEAA QGL+AGIN+ R++   +     R+D+YIGVMIDDL +K
Sbjct: 370 LIKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGQEPFTLKRSDAYIGVMIDDLVTK 429

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT +G  LG + E     F +   +       L
Sbjct: 430 GTKEPYRLLTSRAEYRLILRHDNADLRLTEMGHDLGLVSEEEYAAFLQKKADIQDELHRL 489

Query: 479 KSLVLTS----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           + + +      + L S      +DG    A EFL  P+ +  +L    P + K     V+
Sbjct: 490 EQIRIKPGQVKEFLESKGSHGLKDGV--LAAEFLRRPEVTYADLLKFIPASEKQLDRRVV 547

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  YA Y  +       +K  E ++IP   DY+++  L+ E ++KL  ++P  + 
Sbjct: 548 EQVEIEIKYAGYIKKAQERVDRLKKMEAKVIPDRIDYNAISGLATEGRQKLEKIRPTTIA 607

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+TPA + +L +YI++  +
Sbjct: 608 QASRISGVTPADIAILSVYIQQGKI 632


>gi|315172074|gb|EFU16091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX1342]
          Length = 632

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 372/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +   S VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDSKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|294649953|ref|ZP_06727345.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824182|gb|EFF82993.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 661

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 40  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  ++ A++  + +Q NLD+ Q  
Sbjct: 100 ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRFKAAIRHTLENQANLDIFQQA 159

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 160 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 219

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 220 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 279

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 280 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 339

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 340 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 399

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 400 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 459

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   +++ ++      S L+ L 
Sbjct: 460 PYRMFTSRAEYRLMLREDNADQRLTEIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 519

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 520 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFAQIAELTG--SEVSQQVGEQIEIA 577

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF++  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 578 VKYEGYINRQHEDVAQLKRLEETKIPADFEFDGISGLSREITLKLKTVRPETLAQASRIP 637

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ LL+I I+K+ +
Sbjct: 638 GVTPAAVQLLMITIRKSHM 656


>gi|282897503|ref|ZP_06305504.1| Glucose-inhibited division protein A subfamily [Raphidiopsis
           brookii D9]
 gi|281197598|gb|EFA72493.1| Glucose-inhibited division protein A subfamily [Raphidiopsis
           brookii D9]
          Length = 642

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/621 (42%), Positives = 363/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAGCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 15  FQDAYDVIVVGAGHAGCEAALAVARLGCPTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 75  VDALGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYAAVMKGIVENQENLTIRE 134

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      + + I  +         C  V+LTTGTFL G I +G   + AGR G+  + 
Sbjct: 135 GMVTDLVLGKNDEIIGVETYFGVAFACKAVILTTGTFLGGRIWVGNKSMEAGRAGEFAAV 194

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  DE +  FSF     +   QI 
Sbjct: 195 GLTATLNRLGFETGRLKTGTPARVDKRSVDYSKMEIQPGDEEVRWFSFDPQVWLEKEQIP 254

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 255 CYMTRTTPETHRLIQENLGLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 314

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +R++PGLEK  ++RP YA+EYDY+   + +P+L TKK
Sbjct: 315 RDIPELYIQGFSTGLPETLQILMLRSLPGLEKCVMLRPAYAVEYDYLPATQCYPSLMTKK 374

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+ +     + + F R  SYIG +IDDL +K 
Sbjct: 375 IQGLFCAGQINGTTGYEEAAAQGLVAGINAVQFVQGREMVIFPREQSYIGTLIDDLCTKD 434

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G  +G I +RR   F +  +     +  L 
Sbjct: 435 LREPYRMLTSRSEYRLLLRSDNADQRMTPLGRAIGLIDDRRWNLFTRKQEHIIGEKERLH 494

Query: 480 SLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  +         I+         + T  + L  P+    +L           +   E  
Sbjct: 495 STRIKEHEDIGRLITQHTQQVIKGSITLVDLLRRPEIHYLDLERYGLGNPHLHAAEKEGA 554

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  +I  +  R +P + DY S+  LS E +EKL+ +KP  + QAS
Sbjct: 555 EIDIKYSGYLARQQNQIDQIARQANRHLPPNLDYDSITTLSKEAREKLTTVKPLTIGQAS 614

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA +N LLIY++   
Sbjct: 615 RIGGVNPADINALLIYLETRK 635


>gi|323486761|ref|ZP_08092080.1| hypothetical protein HMPREF9474_03831 [Clostridium symbiosum
           WAL-14163]
 gi|323694903|ref|ZP_08109053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium symbiosum WAL-14673]
 gi|323399900|gb|EGA92279.1| hypothetical protein HMPREF9474_03831 [Clostridium symbiosum
           WAL-14163]
 gi|323500993|gb|EGB16905.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium symbiosum WAL-14673]
          Length = 640

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 374/624 (59%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LTENYDIVVVGAGHAGCEAALAAARLGFETIIFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+  + + ++L + Q
Sbjct: 64  LDALGGEMGKNIDETFIQSKMLNQSKGPAVHSLRAQADKQAYTKRMRHTLENTKHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +   I  I     ++  C  V+L TGT+LR     G +  P G  G   +N 
Sbjct: 124 GEVCEILAKDGKIEGIKTFSGAVYYCKAVILATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L  S      +  R KTGTPAR+D ++I + K E+QF DER+IPFSF TD   +   Q+ 
Sbjct: 184 LTESLKNLGIEMYRFKTGTPARVDKRSIDFTKMEEQFGDERVIPFSFSTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNEKTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKIRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  +LE K 
Sbjct: 304 LYTNEMYLAGMSSSLPEDVQFAMYRTVPGLENVKIVRNAYAIEYDCINSRQLKASLEFKN 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKIQGKEPIILDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL- 478
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G + +   +R            + L 
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSAIGHEIGLVSDELYERILWKESAIAQEVTRLE 483

Query: 479 KSLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           K  +  +K +    +S          T  E +  P+     L  I P+       V E++
Sbjct: 484 KKTIGATKEVQEFLVSHDSTPLKTGTTLAELVRRPELDYVMLTEIDPERPSLPEDVAEQI 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQM +  + K  E + + ++FDYS + +L  E  +KL++ KP N+ QAS
Sbjct: 544 NINIKYEGYIRRQMQQVAQFKKMEGKKLDENFDYSEVKSLRKEAVQKLNLYKPANIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G++PA +++L++++++   + 
Sbjct: 604 RISGVSPADISVLMVHLEQMRYQK 627


>gi|116512725|ref|YP_811632.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125358|sp|Q02X03|MNMG_LACLS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116108379|gb|ABJ73519.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactococcus lactis subsp. cremoris SK11]
          Length = 625

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 374/621 (60%), Gaps = 8/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VRE
Sbjct: 3   FQENYDVIVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + Q
Sbjct: 63  IDALGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYAASMKNTVSDQENLTLRQ 122

Query: 122 GEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G V       EK  +  +     +      V++TTGT LRG I IG+LK  +G      S
Sbjct: 123 GMVEELILDDEKQKVIGVRTSTGTQYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSS 182

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQ 237
             L ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     Q
Sbjct: 183 IGLADNLHEIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQ 242

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEP
Sbjct: 243 IPCWLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEP 302

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLET
Sbjct: 303 EGRNTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAKMMRPGYAIEYDVVMPHQLRPTLET 362

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ISGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +
Sbjct: 363 KLISGLFTAGQTNGTSGYEEAAGQGLVAGINAALKIQGKPEFILKRSEAYIGVMIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + + + +   + +++     
Sbjct: 423 KGTLEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDAQWEHYQAKMAQFDREMKR 482

Query: 478 LKSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           L S  L            + F       T  EFL  P+     +      A +     VI
Sbjct: 483 LNSEKLKPLPDTQEKLGKLGFGPIKDALTGAEFLKRPEVHYDEVIDFIGQAPEVIDRTVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L 
Sbjct: 543 ELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLG 602

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+ PA +++L++Y++
Sbjct: 603 QASRISGVNPADISILMVYLE 623


>gi|240145749|ref|ZP_04744350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseburia intestinalis L1-82]
 gi|257202165|gb|EEV00450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseburia intestinalis L1-82]
          Length = 657

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/653 (40%), Positives = 377/653 (57%), Gaps = 30/653 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDV+V+G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   IEENYDVVVVGAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + E+L + Q
Sbjct: 64  IDALGGQMGINIDKTFIQSKMLNKSKGPAVHSLRAQADKVNYSMEMRKTLQNTEHLTIRQ 123

Query: 122 GEVAGFNT-------------------------EKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EVA   T                         E   I+ +      +  C  +VL TGT
Sbjct: 124 AEVAEIITVPANSADGETAAVEKKDGQMVEINGELQKITGVKTVSGGVYHCKAIVLCTGT 183

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           +LR     G++    G  G   +N L +S      +  R KTGTPAR+D +++ + K ++
Sbjct: 184 YLRARCLTGEMITYTGPNGLMAANHLTDSLKAHGIEMFRFKTGTPARVDKRSLDFSKMQE 243

Query: 217 QFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           Q  DER++PFSF T  + +   Q+ C +T TN +TH II  N+  S IY+G I+  GPRY
Sbjct: 244 QKGDERVVPFSFTTNPEDVQIDQVSCWLTYTNPKTHEIIRANLDRSPIYAGIIEGTGPRY 303

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDK+V+F +++ HQIF+EPEG+NT+ +Y  G+S++LPE++QH+  RT+PG+E V I
Sbjct: 304 CPSIEDKVVKFADKDRHQIFIEPEGINTNEMYVGGMSSSLPEDVQHEMYRTLPGMEHVKI 363

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           +R  YAIEYD INP +L+ +LE KKI GLF  GQ NG++GYEEAA QGL+AGIN+A    
Sbjct: 364 VRNAYAIEYDCINPDQLYASLEFKKIKGLFSGGQFNGSSGYEEAACQGLIAGINAAMSIL 423

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
           + + +   R+++YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G
Sbjct: 424 EKEPLVLDRSEAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLTKKGYEIG 483

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYP 511
            I + R     K  +        +  + + +       +         T     E +  P
Sbjct: 484 LISKERYDWVCKKEELIAQEIERVAKVKIGANKKVQELLESYDSIPLNTGTFLTELIRRP 543

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
           +     L  I P+     + V E++ I   Y  Y  RQM + +  K  EK+ IP++F+Y 
Sbjct: 544 ELDYDKLAPIDPERPDLPAEVAEQVNISIKYDGYIKRQMKQVESFKKLEKKKIPENFNYD 603

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
            +P+L  E ++KL    P ++ QAS+I G++PA +++LL+Y+++      E  
Sbjct: 604 DVPSLRIEARQKLKTYSPTSIGQASRISGVSPADVSVLLVYMEQMKYHEKESA 656


>gi|312144698|ref|YP_003996144.1| glucose inhibited division protein A [Halanaerobium sp.
           'sapolanicus']
 gi|311905349|gb|ADQ15790.1| glucose inhibited division protein A [Halanaerobium sp.
           'sapolanicus']
          Length = 636

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/624 (42%), Positives = 383/624 (61%), Gaps = 6/624 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEA+   A++G  T  +T     +  M CNP++GG GK H+VREID
Sbjct: 8   KEYDVIVIGAGHAGCEASLAPARMGFETLTLTVNLDHVAFMPCNPSLGGPGKSHIVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M R  D   IQ R+LN  KGPAV G R Q+D++ Y   M+R + +Q+NLD+ Q  
Sbjct: 68  ALGGEMARNMDETMIQIRMLNTSKGPAVHGLRGQSDKQAYHQRMKRILENQDNLDLKQQI 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + I  ++ +         V+LTTGTFL+G I IG+ K  AG     P+N L 
Sbjct: 128 AEKLVVEDDEIKGVITKTGIFFAGKKVILTTGTFLKGRIIIGEAKFNAGPNQQYPANKLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +      R KTGTP R+  +++ + K E Q  ++ L  FSF ++ +   Q  C +T
Sbjct: 188 GSLKEEGISLRRFKTGTPPRVSKRSLDFSKMEPQPGEDGL-SFSFQSEPLKGEQAMCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH+II EN   + ++SG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +TD
Sbjct: 247 YTTEKTHKIINENKMRTPLFSGVIEGVGPRYCPSIEDKVVRFPDKGRHQLFIEPEGADTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y +G+ST+LP ++Q +  R+I GLE+V I+RPGYAIEYD ++P+EL   LE KKI GL
Sbjct: 307 EYYISGLSTSLPHDVQIEMARSIHGLEEVEIMRPGYAIEYDCVDPEELKLDLELKKIKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAA QG+VAGIN+A      + +   R+++YIGV+IDDL +KG  EP
Sbjct: 367 YTAGQINGSSGYEEAAGQGIVAGINAALSLQNREAMILKRSEAYIGVLIDDLVTKGTPEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL--KSL 481
           YR+ TSRAEYR+ LR DNAD RLTPIG K+G + ++R K +   I+        L  ++ 
Sbjct: 427 YRIMTSRAEYRLLLRQDNADQRLTPIGRKVGLVDDKRYKNYQAKIKGVKKALDYLRDENN 486

Query: 482 VLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +         +   + G   K  T    L  P+ S ++L     D  + +  V E+++I
Sbjct: 487 KINPTAEVREKLEELESGNLSKPVTLEALLRRPELSYEDLRFFASDLPEITKEVAEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  +  + +  E++ IP++ DYS+L  L  E +EKL+ +KP ++ QAS+I
Sbjct: 547 QVKYKGYIDRQQAQVDQFRKMEEKKIPEELDYSNLENLRLEAREKLARVKPLSIGQASRI 606

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++PA ++ L+IY+++ T    +
Sbjct: 607 SGVSPADISALMIYLEQYTRSKKD 630


>gi|319788554|ref|YP_004148029.1| glucose inhibited division protein A [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467066|gb|ADV28798.1| glucose inhibited division protein A [Pseudoxanthomonas suwonensis
           11-1]
          Length = 628

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/620 (47%), Positives = 388/620 (62%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EID
Sbjct: 5   HQYDVIVIGGGHAGTEAALASARAGAGTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  
Sbjct: 65  ALGGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRGLYRSAIRRMVENQTNLTVFQAA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +   + Q         VVLT GTFL G +HIG     AGRMGD PS +L 
Sbjct: 125 VDDLVIEGDAVRGAITQTGLRFEAPAVVLTAGTFLAGKVHIGPTTYAAGRMGDPPSTTLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGI 242
               +  F   RLKTGTP R+DG+++ +   E+Q  D+ L   SF+     + RQ+ C I
Sbjct: 185 ARLRERPFAIDRLKTGTPPRIDGRSLDYAAMEEQPGDDPLPVMSFLGRVEHHPRQVSCWI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL+ 
Sbjct: 245 THTTARTHEIIRGALDRSPLYTGQIEGIGPRYCPSIEDKVVRFAEKESHQIFVEPEGLDV 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G    +I RPGYAIEYD+ +P+ L PTLET+ +SG
Sbjct: 305 AEIYPNGISTSLPFDVQLELVRSIRGFGNAHITRPGYAIEYDFFDPRGLKPTLETRLVSG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+AR    L+     R ++Y+GV++DDL + G  E
Sbjct: 365 LFFAGQINGTTGYEEAAAQGLLAGINAARHVRGLEGWSPRRDEAYLGVLVDDLITHGTSE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R  RF    +      + L++L 
Sbjct: 425 PYRMFTSRAEYRLQLREDNADLRLTETGRQLGLVDDARWTRFCDKREAIERETARLRALW 484

Query: 483 LTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
            T  N        +      +   A + L  P+     L  +         + V E++QI
Sbjct: 485 ATPANAVGREVEQVLGVAVSRETNALDLLKRPELDYAALMRVPALGPAVEDAQVAEQVQI 544

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E +  +  E   IP+DFDY+++  LS E+++KL  ++P ++ QA +I
Sbjct: 545 GVKYAGYLDRQREEIERQRRHESTPIPQDFDYAAVRGLSAEVQQKLERVRPLSIGQAQRI 604

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            GMTPAA++LLL+++++   
Sbjct: 605 PGMTPAAISLLLVHLERQRR 624


>gi|295693882|ref|YP_003602492.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Lactobacillus crispatus ST1]
 gi|295031988|emb|CBL51467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus ST1]
          Length = 634

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/620 (42%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 9   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 69  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 129 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C
Sbjct: 189 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESRDEDYLQKQISC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 249 WMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGK 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 309 TTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 369 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R  RF +        ++ L  
Sbjct: 429 NEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDAKTRLHE 488

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 609 ISGVNPADLAILSVYIQNGR 628


>gi|312901324|ref|ZP_07760605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0470]
 gi|311291557|gb|EFQ70113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0470]
          Length = 632

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 372/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +  +  VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALNPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|301058100|ref|ZP_07199152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [delta proteobacterium NaphS2]
 gi|300447732|gb|EFK11445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [delta proteobacterium NaphS2]
          Length = 621

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/616 (47%), Positives = 394/616 (63%), Gaps = 3/616 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIV+G GHAGCEAA  AA++G  T L+T     + +MSCNPAIGGL KGHLV+EI
Sbjct: 5   DKQYDVIVVGAGHAGCEAALAAARMGHPTLLLTINLDHVAAMSCNPAIGGLAKGHLVKEI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M + AD  GIQFR LN +KG AV+G R+Q DR+LYR  M++ + S  NLD+ Q 
Sbjct: 65  DALGGEMAKNADQTGIQFRRLNTRKGLAVQGSRSQNDRDLYRKRMKQVVESTPNLDIRQA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +   I  I  + +  +   TVVLT+GTFLRG++HIG     AGRMGD  S  L
Sbjct: 125 MVDRLLVKGEKIYGIETRIHEKVLGRTVVLTSGTFLRGLVHIGLDHFEAGRMGDPASVRL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                   F+ GRLKTGT  RL+G+TI +D    Q  DE   PFSF T KI   Q+ C +
Sbjct: 185 SEQLEALGFEVGRLKTGTTPRLNGRTIDYDGLAVQPGDENPKPFSFTTTKIPLPQVPCHM 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II E +  S ++SG I+  G RYCPSIEDK+VRF E+  HQIFLEPEGL+T
Sbjct: 245 TYTNAKTHDIIREGLDRSPLFSGIIEGTGARYCPSIEDKVVRFSEKERHQIFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNG+ T+LP +IQ + +R+IPGLEK  I+RPGYAIEYDYINP EL P  ETK+++G
Sbjct: 305 FEVYPNGLPTSLPLDIQIRMVRSIPGLEKAEILRPGYAIEYDYINPLELLPNQETKRVAG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAAAQGL+AGIN+ +K      +  SR ++Y GV+IDDL +KG  E
Sbjct: 365 LFHAGQINGTSGYEEAAAQGLLAGINAVKKVRGEAPVILSRAEAYAGVLIDDLVTKGTRE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RL  +G +LG + +     F +   +   L   LK++ 
Sbjct: 425 PYRMFTSRAEFRLLLREDNADFRLRDLGYELGLVSKDVYADFCRKRDQVWKLLQRLKAVQ 484

Query: 483 LTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L  +        ++      K  T  + L   +   ++L    P     +  V   ++ +
Sbjct: 485 LKPRPGILDQLKALKTAPIKKATTLEQLLKRSEIYFEHLHLFDPALADENESVSMEVETQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + +++K  E + IP+  DY ++  LSNE++EKL  ++P +L QA++I 
Sbjct: 545 IKYDGYIERQKRQVEKLKHLESKKIPRGIDYETVHGLSNEVREKLGKIRPLSLGQAARIS 604

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAA++ + +++K+
Sbjct: 605 GVTPAAISAIQVHLKR 620


>gi|256060025|ref|ZP_05450207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella neotomae 5K33]
 gi|261324002|ref|ZP_05963199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella neotomae 5K33]
 gi|261299982|gb|EEY03479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella neotomae 5K33]
          Length = 636

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 454/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGG+AGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGYAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|254515876|ref|ZP_05127936.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR5-3]
 gi|219675598|gb|EED31964.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium NOR5-3]
          Length = 643

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/624 (45%), Positives = 386/624 (61%), Gaps = 5/624 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA++G +T L+TH   T+G MSCNPAIGG+GK HLVREIDA
Sbjct: 6   HFDVIVIGGGHAGTEAALAAARMGCATLLLTHSVDTLGQMSCNPAIGGIGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D AGIQFRVLN +KGPAVR  R QADR LYR A++  I +Q  L V Q  V
Sbjct: 66  LGGAMAKATDQAGIQFRVLNSRKGPAVRATRAQADRVLYRNAIRSIIEAQSGLQVFQQAV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +V Q     R   V+LTTGTFL G +HIG  K   GR GD PSN+L  
Sbjct: 126 DDLIIENGAVQGVVTQTGLRFRAPRVILTTGTFLGGQMHIGLTKSAGGRAGDPPSNTLAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI-ECGIT 243
              +      RLKTGTP RLD ++I     E Q+ DE     SF+ D   +     C + 
Sbjct: 186 RLRELPLRVERLKTGTPPRLDARSIDLASLETQWGDEPRPVMSFLGDPDQHPDQRCCWVA 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH II E +  S +Y+G I+  GPRYCPSIEDKI RF ++  HQ+F+EPEGL T+
Sbjct: 246 YTNQHTHDIIREGLDRSPLYTGVIEGEGPRYCPSIEDKIQRFADKTSHQVFVEPEGLTTN 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q   +R+I G E  +I RPGYAIEYD+ +P++L  +LET+ I GL
Sbjct: 306 ELYPNGISTSLPFDVQMALVRSIQGFENAHITRPGYAIEYDFFDPRDLRSSLETRAIGGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AGIN+A    +    C  R ++Y+GV++DDL + G  EP
Sbjct: 366 YFAGQINGTTGYEEAAAQGLLAGINAALAIREEAPWCPRRDEAYLGVLVDDLITLGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT  G KLG + + R  +F++  +     +  L    +
Sbjct: 426 YRMFTSRAEHRLLLREDNADLRLTEQGRKLGLVDDERWAQFSEKRELIEQEQKRLLRSFV 485

Query: 484 TSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + ++ S++    K   +  +  E L  P+    ++ ++       +     ++ I++
Sbjct: 486 HPGSPAANSLNAKLSKPLSREYSYAELLKRPELEYADISALD-SLGISNPQAALQVSIQA 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   ++  E   +P D DY  +  LSNE+++KL   +P  L +AS+I G
Sbjct: 545 KYAGYIDRQQDEIDRVRRYEGLTLPSDMDYLQVSGLSNEVRDKLIAQQPETLGRASRIPG 604

Query: 601 MTPAALNLLLIYIKKNTVKLNEIV 624
           +TPAA++LLL+++K+   K  + +
Sbjct: 605 VTPAAISLLLVHMKRRQGKSAKTL 628


>gi|294794210|ref|ZP_06759346.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 3_1_44]
 gi|294454540|gb|EFG22913.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 3_1_44]
          Length = 623

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/619 (41%), Positives = 372/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         ++L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAIILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  D    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLDNMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++  + + R  +F            +L++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREISLVKDDRWAKFTAKKAAIEEAMDMLRNTPVN 485

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+          AY+ +   + S   +       ++++  V E + I  +
Sbjct: 486 PSKETQALLESLGTASIKTGIHAYDLVKRNELSYAIVADAF-GLKRYTPDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMEQVDKVRKLEEKILPKEWDYAQIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|189426683|ref|YP_001953860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter lovleyi SZ]
 gi|189422942|gb|ACD97340.1| glucose inhibited division protein A [Geobacter lovleyi SZ]
          Length = 624

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/616 (47%), Positives = 390/616 (63%), Gaps = 3/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDVIV+G GHAGCEAA  AA++G  T L+      +  MSCNP+IGGL KGHLVRE
Sbjct: 4   YETRYDVIVVGAGHAGCEAALAAARMGCLTLLLNMSLDGMAVMSCNPSIGGLAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  DA GIQFRVLN +KGPAVR  R QAD++LYRL M+R +  Q NL V Q
Sbjct: 64  IDALGGEMAKNIDATGIQFRVLNTRKGPAVRAGRAQADKQLYRLRMKRVLEQQPNLHVKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV   + E   +  +  +        TVVLTTGTF+RG+IHIG +    GR GD PS  
Sbjct: 124 GEVTALHLESGELRGVDTRSGIRFLGKTVVLTTGTFMRGLIHIGLINYAGGRAGDLPSLG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      F+ GRLKTGTPARLDG+TI + + E Q++D+  +PFSF T++IT  Q+ C 
Sbjct: 184 LSDQLKALGFEVGRLKTGTPARLDGRTIDFSRLEAQYSDDPPVPFSFSTERITMPQVPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQ F+EPEGL 
Sbjct: 244 IAYTNQRTHEIIRSGLDRSPLYAGIIEGIGPRYCPSIEDKVVRFPDKERHQTFVEPEGLE 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YP+G+ST+LP +IQ  F R++ GLE+V I+RP Y IEYDY+NP +L  TLETK I 
Sbjct: 304 TVEYYPSGMSTSLPIDIQIAFYRSMVGLEQVEIMRPAYGIEYDYVNPVQLHATLETKLIK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAA QG++AGIN+A K    + I   R +SYIGVM+DDL + G  
Sbjct: 364 NLFHAGQINGTSGYEEAAGQGILAGINAALKVKGREPIMLGRHESYIGVMVDDLVTLGTR 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL  IG  +G + E     F +   +       +++ 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADIRLREIGHSVGLVDETTYAGFCRKQGQIRDELERIRAT 483

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L+                  K  +  + L  P+   Q L  I   A +  S V E+++I
Sbjct: 484 RLSLNPEEKSWCKRHGCADLHKGASYEQLLRRPEIGYQQLQEIDRQAAELPSAVREQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ + + ++ +E+  IP D DY ++P L++E++EKL   KP  L QA++I
Sbjct: 544 QVKYQGYIERQLEQIERVRKQEEARIPSDLDYKAVPGLTSEVREKLERFKPDTLGQAARI 603

Query: 599 EGMTPAALNLLLIYIK 614
           +G+TPAA+ ++ + +K
Sbjct: 604 QGVTPAAIAIISVMLK 619


>gi|262046277|ref|ZP_06019240.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus MV-3A-US]
 gi|260573607|gb|EEX30164.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus MV-3A-US]
          Length = 632

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/620 (42%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGK 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 307 TTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R  RF +        ++ L  
Sbjct: 427 NEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDAKTRLHE 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +       V E+++
Sbjct: 487 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|227543713|ref|ZP_03973762.1| glucose-inhibited division protein A [Lactobacillus reuteri
           CF48-3A]
 gi|300908778|ref|ZP_07126241.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri SD2112]
 gi|227186281|gb|EEI66352.1| glucose-inhibited division protein A [Lactobacillus reuteri
           CF48-3A]
 gi|300894185|gb|EFK87543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri SD2112]
          Length = 647

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/629 (42%), Positives = 371/629 (58%), Gaps = 13/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  A ++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAATRMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  DE    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + + R  +  +  ++       L+ 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSDERLAKMEEKKRQVAAEIKRLEE 498

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVI 533
           + L   +      + +   +  +DG    A + L  P F  Q L    P    +    VI
Sbjct: 499 IKLKPSDDKVNEFIEAHGDNRLKDGIA--AADLLKRPYFDYQTLAEFIPAPEQELDRHVI 556

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L 
Sbjct: 557 EQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETLA 616

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           QAS+I G+ PA + +L +Y+++ T    +
Sbjct: 617 QASRISGVNPADIAILSVYVRQGTFSKKD 645


>gi|256963960|ref|ZP_05568131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis HIP11704]
 gi|307273988|ref|ZP_07555198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0855]
 gi|256954456|gb|EEU71088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis HIP11704]
 gi|306509296|gb|EFM78356.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0855]
          Length = 632

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  +ENL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEENLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQSKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|227878342|ref|ZP_03996299.1| glucose-inhibited division protein A [Lactobacillus crispatus
           JV-V01]
 gi|256849609|ref|ZP_05555041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus MV-1A-US]
 gi|312984012|ref|ZP_07791360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus CTV-05]
 gi|227862078|gb|EEJ69640.1| glucose-inhibited division protein A [Lactobacillus crispatus
           JV-V01]
 gi|256713725|gb|EEU28714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus crispatus MV-1A-US]
 gi|310894514|gb|EFQ43588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus CTV-05]
          Length = 634

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/620 (42%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 9   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 69  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 129 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C
Sbjct: 189 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKIPRHFSYESRDEDYLQKQISC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 249 WMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGK 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 309 TTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 369 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R  RF +        ++ L  
Sbjct: 429 NEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDAKTRLHE 488

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYDQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 609 ISGVNPADLAILSVYIQNGR 628


>gi|91762517|ref|ZP_01264482.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718319|gb|EAS84969.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 623

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/616 (53%), Positives = 433/616 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S++V+VIGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   SFEVVVIGGGHAGCEAAAASARLGINTALFTHKIETIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAV+GPRTQ+DR LYR  MQ ++L+  NL +    V
Sbjct: 66  LDGVMGEVADKSGIQFRLLNRSRGPAVQGPRTQSDRSLYRKYMQEKLLNYCNLSIFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F   KN IS    +    I CS ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IRFIFNKNTISGFKTKSGKKILCSKLILTTGTFLNGLIHIGDERTPAGRFNEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K+DF  GRLKTGTP RLD +TI +D  E+QFADE    FSF+T K  N+Q+ C +T 
Sbjct: 186 QLEKYDFKIGRLKTGTPPRLDTRTIKYDNLEEQFADEDPYFFSFLTKKNLNKQVSCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+K SA+YSG I+  GPRYCPSIEDKIV+F +++ HQI+LEPEGLN   
Sbjct: 246 TNEKVHKIIQKNLKRSAMYSGSIQGVGPRYCPSIEDKIVKFADKDRHQIYLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q +    I GLE V IIRPGYAIEYDYI+P+ELF TLETKKI  L+
Sbjct: 306 IYPNGISTSLPEDVQQEICNNINGLENVKIIRPGYAIEYDYIDPRELFLTLETKKIQNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    K +     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSFKKQEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G+++G I + R+  F    ++   +  ++   +++
Sbjct: 426 RMFTSRAEYRLSLRADNADQRLTNKGIEIGLISKEREDIFKDKEKKLGIISKIMGESLIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + S +I   +DG  R + E L+    +++ +  I P+   F   + E+++I + Y  
Sbjct: 486 PTKIKSFNIKIAKDGILRKSNEILTQKGVNMKKIREIWPEIPYFDKKIDEQIEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP++ +Y  L  LSNE+K K   +KP  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLVIPENLNYDDLSGLSNEVKSKFEQIKPQTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVKL 620
           A+ +LL Y+K+ ++KL
Sbjct: 606 AVYILLSYVKRKSIKL 621


>gi|256158559|ref|ZP_05456449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti M490/95/1]
 gi|256253968|ref|ZP_05459504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella ceti B1/94]
 gi|260169468|ref|ZP_05756279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. F5/99]
 gi|261221110|ref|ZP_05935391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti B1/94]
 gi|261758995|ref|ZP_06002704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. F5/99]
 gi|265997071|ref|ZP_06109628.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M490/95/1]
 gi|260919694|gb|EEX86347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti B1/94]
 gi|261738979|gb|EEY26975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella sp. F5/99]
 gi|262551539|gb|EEZ07529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella ceti M490/95/1]
          Length = 636

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGYEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|315151267|gb|EFT95283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0012]
          Length = 632

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 370/623 (59%), Gaps = 10/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 7   ESYDVIVVGAGHAGSEAALAAARMGVKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 67  ALGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYATEMKHTIEKEGNLTLRQGI 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   +V    +  R   VV+T GT LRG I IG+LK  +G     PS  L 
Sbjct: 127 VEELIVEDGVCRGVVTSTGAAYRSQAVVITAGTALRGEIIIGELKYSSGPNNSQPSVGLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
           N   +   +  R KTGTP R+   TI +  TE+Q  D+    FS+ T        Q  C 
Sbjct: 187 NHLKELGLEIDRFKTGTPPRVKSSTIDYSVTEEQPGDKEPNHFSYSTPDSAYNQNQEPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEGLN
Sbjct: 247 LTYTNETTHEIIQKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPRHQLFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY  G+ST+LPE++Q + + +I GLEKV ++R GYAIEYD + P +L PTLETK I 
Sbjct: 307 TEEVYVQGLSTSLPEDVQTEMLHSIEGLEKVEMMRTGYAIEYDVVVPHQLRPTLETKVIE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQ NGT+GYEEAA QGL+AGIN+A K    + +   R+D YIGVMIDDL +KG  
Sbjct: 367 NLYTAGQTNGTSGYEEAAGQGLMAGINAALKIQGKEPLVLKRSDGYIGVMIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + E +   +           + L   
Sbjct: 427 EPYRLLTSRAEYRLILRHDNADLRLTEMGHEIGLVKEEQYAAYLVKKAAVEAEIARLGKH 486

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            +         L +   +  +DG    A +FL  P+ S Q +    P   +     VIE+
Sbjct: 487 RIKPTKEVQAFLETKGAAGLKDGI--LARDFLKRPEISYQEVAQFIPAPEEALDPKVIEQ 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  + M + +++K  E + IP++ DY ++  L+ E K+KL  ++P  + QA
Sbjct: 545 VEIQIKYEGYIKKAMEKVEKLKRMEAKRIPENIDYQAINGLATEAKQKLQKIQPETIAQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA +++L++YI++  +
Sbjct: 605 SRISGVNPADISILMVYIEQGKI 627


>gi|226952640|ref|ZP_03823104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ATCC 27244]
 gi|226836629|gb|EEH69012.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter sp. ATCC 27244]
          Length = 644

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 386/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 23  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 82

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  ++ A++  + +Q NLD+ Q  
Sbjct: 83  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRVRFKAAIRHTLENQANLDIFQQA 142

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLTTGTFL GVIHIG      GR GD PS +L 
Sbjct: 143 ADDLIVEGDTVKGVVTQMGIRFDTKTVVLTTGTFLGGVIHIGLQNSSGGRAGDPPSIALA 202

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   +     GRLKTGTP R+D +T+ +     Q  D      SFM D  +   Q+ C I
Sbjct: 203 HRLRELKLPVGRLKTGTPPRIDARTVDFSVMTPQPGDFPSPVMSFMGDASMHPEQVNCYI 262

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 263 THTSEKTHEIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 322

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I  
Sbjct: 323 HELYPNGISTSLPFDVQFNLVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAIQN 382

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  E
Sbjct: 383 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKE 442

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG +LG + + R   +++ ++      S L+ L 
Sbjct: 443 PYRMFTSRAEYRLMLREDNADQRLTEIGRELGLVDDERWAAYSEKMEAVERETSRLQHLW 502

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ +   +  +     + S  V E+++I 
Sbjct: 503 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNINFAQIAELTG--SEVSQQVGEQIEIA 560

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  +  ++K  E+  IP DF++  +  LS E+  KL  ++P  L QAS+I 
Sbjct: 561 VKYEGYINRQHEDVAQLKRLEETKIPADFEFDGISGLSREITLKLKTVRPETLAQASRIP 620

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ LL+I I+K+ +
Sbjct: 621 GVTPAAVQLLMITIRKSHM 639


>gi|159030162|emb|CAO91054.1| gidA [Microcystis aeruginosa PCC 7806]
          Length = 635

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/622 (41%), Positives = 362/622 (58%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDEFDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANLVIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 AMATDLILGANEQVLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + + E Q  D+ +  FSF  +  I   Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSRMEPQPPDDEVRWFSFDPEVWIEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT   TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHLTRTTAATHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++R  YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENVQLAMLRTLPGLENCVMLRAAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+AR +   + I F R +SY+G ++DDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGLVAGINAARFALGKELIVFPREESYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLVLRSDNADQRLTPLGREIGLIDDRRWQLFQRKQTNIIAEKERLH 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +  ++  + +I   + ++   + +  + L  P     +L          +    E +
Sbjct: 489 ETRIKERDQVAIAIVKDTEQKIKGSLSLADLLRRPSLHYLDLDRYGLGNPDINLAEREGV 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQ  +  +I     R +  D DY  +  LS E +EKL+ +KP  + QAS
Sbjct: 549 EIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKIKPATIGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +N LL+Y++   +
Sbjct: 609 RIGGVNPADINALLVYLEMRQM 630


>gi|222087928|ref|YP_002546466.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
 gi|221725376|gb|ACM28532.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
          Length = 626

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/615 (62%), Positives = 478/615 (77%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YDVIV+GGGHAG EAAA AA+LGA TAL+THK  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MLETIYDVIVVGGGHAGSEAAAAAARLGAKTALVTHKRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA GIQFR+LN KKGPAVRGPRTQADR+LYRLAMQ EI + ENLD+I
Sbjct: 61  EIDALDGLMGRVADAGGIQFRMLNRKKGPAVRGPRTQADRKLYRLAMQAEIGAIENLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          +S++V+++   IRC  VVLTTGTFLRG+IHIG  KIPAGR+G+ PS 
Sbjct: 121 EGDAFDLTISDGRVSAVVLKNGRTIRCGAVVLTTGTFLRGLIHIGDRKIPAGRVGEEPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  ++     RLKTGTPARLDG TI W+   +Q AD+  +PFSFMTD+I N QIEC
Sbjct: 181 GLSGTLERYGLALARLKTGTPARLDGSTIDWNAVGRQGADDEPVPFSFMTDRIVNPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   TH+II +N+  SA+YSG I+  GPRYCPSIEDKIV+FGER+GHQIFLEPEGL
Sbjct: 241 GVTRTTPATHKIIADNLMRSAMYSGQIEGVGPRYCPSIEDKIVKFGERDGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPEE+Q  FIRTIPGLE+V I++ GYAIEYD+++P+EL P+LE  KI
Sbjct: 301 DDTTVYPNGISTSLPEEVQDAFIRTIPGLERVRILQCGYAIEYDHVDPRELKPSLEVMKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEA AQGL+AG+N+AR S   D I  SRT+SYIGVMIDDLTS+GV
Sbjct: 361 PGLFLAGQINGTTGYEEAGAQGLIAGLNAARLSGGGDAIQLSRTESYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP+G+ +GC+G  R  RF  Y+++  + R+ LK+
Sbjct: 421 AEPYRMFTSRAEYRLSLRADNADVRLTPLGLTIGCVGSARADRFGDYMEKLEWARTQLKA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L +T        +   +DG+ RTAY+ LSYP+ SI +L  + P+ R     V+E ++IE+
Sbjct: 481 LSVTPSEAEKAGLHLNKDGQRRTAYDLLSYPEHSIDSLSGLWPELRSIDRRVVEAVEIEA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +  +++ EE+RLIP+DFD+S L  LSNELK+KL+  +P N+ QAS+I+G
Sbjct: 541 AYAVYMDRQTSDIVQVRREEERLIPQDFDFSILSGLSNELKQKLAKAQPKNIAQASRIDG 600

Query: 601 MTPAALNLLLIYIKK 615
           MTPAA++LLL +++K
Sbjct: 601 MTPAAISLLLAHLRK 615


>gi|294792404|ref|ZP_06757551.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 6_1_27]
 gi|294456303|gb|EFG24666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. 6_1_27]
          Length = 623

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/619 (41%), Positives = 376/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA   A++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALATARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ + + +NL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTLENTDNLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         V+L TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVILCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +    Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGVELMRFKTGTPARVDKRTLNLENMVVQEGDAHHHAFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIIHSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKNIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F            +L++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLVKDDRWAKFTAKKAAIEEAMDMLRNTPVN 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +        RT   AY+ +   + S   + +     ++++S V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIRTGIHAYDLVKRNELSY-TIVADAFGLKRYTSDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMEQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|332687268|ref|YP_004457042.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Melissococcus plutonius ATCC 35311]
 gi|332371277|dbj|BAK22233.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Melissococcus plutonius ATCC 35311]
          Length = 632

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/620 (41%), Positives = 378/620 (60%), Gaps = 6/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TYDVIVVGAGHAGSEAALSAARMGCKTLLLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD++ Y   M++ I  ++NL + QG V
Sbjct: 68  LGGEMGRNIDKTSIQMRMLNTGKGPAVRALRAQADKQEYATEMKKTIEKEKNLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   ++    ++ +   V++T GT LRG I IG+LK  +G     PS  L N
Sbjct: 128 EQLVVEDGICKGVITSTGAIYQSQAVIITAGTSLRGEIIIGELKYSSGPNNSQPSVGLAN 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
              +  F+  R KTGTP R+   TI ++ TE+Q  D+ +  FS+ T  +  +  Q  C +
Sbjct: 188 HLKELGFEIARFKTGTPPRVKSSTIDYNATEEQAGDKAINYFSYRTKEEAYSKEQRSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  + +++G ++  G RYCPSIEDKIVRF +++ HQ+FLEPEGLNT
Sbjct: 248 TYTNEMTHEIIRKNLHRAPMFTGIVEGVGARYCPSIEDKIVRFEDKSRHQLFLEPEGLNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   + +I GLEK  ++R GYAIEYD + P +L PTLETK I+ 
Sbjct: 308 EEVYVQGLSTSLPEDVQTNVLHSIDGLEKAEMMRTGYAIEYDVVVPHQLRPTLETKIINN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAA QGL+AGIN+A K          R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQTNGTSGYEEAAGQGLMAGINAALKIKGKAPFIMKRSDGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G  +G + E + + +           + L++  
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEKGYAMGLVKEEQYQEYLIKKATIEKEIAFLQTTR 487

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
           +   +     ++ K       +  A +FL  P+ +  +L    P+  +  +  VIE+++I
Sbjct: 488 IKPTDDVQQFLTEKGSVPLKDSLLASDFLKRPEINFHDLQQFIPNSDQTLNDKVIEQVEI 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  + + +  ++K  E + IP++ DY ++  L+ E K+KL  ++P  + QAS+I
Sbjct: 548 QIKYEGYIKKAVEKVDKLKRMEAKRIPENIDYYAINGLATEAKQKLQKIQPETMAQASRI 607

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA L++L++YI++  +
Sbjct: 608 SGVNPADLSILMVYIEQGKI 627


>gi|257095887|ref|YP_003169528.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048411|gb|ACV37599.1| glucose inhibited division protein A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 638

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/627 (46%), Positives = 401/627 (63%), Gaps = 9/627 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G+MSCNP+IGG+GKGHLV+
Sbjct: 2   LFPDRFDVIVVGGGHAGTEAALAAARMGMKTLLLTHNLETLGAMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D AGIQFR+LN  KGPAVR  R QADR LYR A++  +    NL + 
Sbjct: 62  EVDALGGAMAEATDEAGIQFRILNSSKGPAVRATRAQADRVLYRQAIRSRLEKLPNLTIF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    + + ++ +V Q         VVLTTGTFL G+IH+G      GRMGD P+ 
Sbjct: 122 AQACDDLILDGDRVAGVVSQLGVRFAARAVVLTTGTFLNGLIHVGLTNYTGGRMGDPPAV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
           SL     +     GRLKTGTP RLDG+TI +    +Q +D+ L  FSF+ D   + Q + 
Sbjct: 182 SLAARLRELQLPVGRLKTGTPPRLDGRTIDFSVMVEQHSDDPLPVFSFLGDAARHPQQLP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II  N+  S +Y+G I+  GPRYCPSIEDKI RF  ++ H IFLEPEG
Sbjct: 242 CWITSTNPQTHAIIRANLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAAKDSHNIFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q   +R+I GLE  +I+RPGYAIEYDY +P+ L  +LET+ 
Sbjct: 302 LATHEIYPNGISTSLPFDVQLAIVRSIRGLENCHILRPGYAIEYDYFDPRGLKASLETRA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGL+AG N+A    + +     R ++Y+GV++DDL ++G
Sbjct: 362 IGGLFFAGQINGTTGYEEAAAQGLLAGANAALLVQEREAWTPRRDEAYLGVLVDDLITRG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+SLR DNAD RLT  G +LG + +RR + F++        +  LK
Sbjct: 422 VSEPYRMFTSRAEYRLSLREDNADMRLTEEGRRLGLVDDRRWQAFSEKRAAIGREQERLK 481

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKF-SSL 531
           S  ++ + +    +T +  K      + ++ L  PD S   L ++     P A     + 
Sbjct: 482 STWVSPRLVADDEATRVLGKPLEHEYSLHDLLRRPDVSYAALMTLRAGEVPVAAGLGDAQ 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           VIE+L+I++ Y  Y  RQ  E       E+   P+ FD+SS+  LS E+++KL++ +P  
Sbjct: 542 VIEQLEIQARYQGYIERQQDEVARSLANEQTRFPEGFDFSSVGGLSKEVQQKLAVQRPQT 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTV 618
           L QAS+I+GMTPAA+++LL+++K+   
Sbjct: 602 LGQASRIQGMTPAAISILLVHLKRGEA 628


>gi|239833102|ref|ZP_04681431.1| glucose-inhibited division protein A [Ochrobactrum intermedium LMG
           3301]
 gi|239825369|gb|EEQ96937.1| glucose-inhibited division protein A [Ochrobactrum intermedium LMG
           3301]
          Length = 654

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/620 (57%), Positives = 449/620 (72%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 26  DFDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDA 85

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I +Q+NL V++G  
Sbjct: 86  LDGLMGRVADEAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQKMIAAQDNLSVVEGGA 145

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   I+ +++ D   + C  VVLTTGTFL G+IHIG+ KIPAGRMG+ P+  L  
Sbjct: 146 HDLLEQDGRITGVILSDGRTLTCGAVVLTTGTFLNGLIHIGEKKIPAGRMGEKPALGLSE 205

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
               F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QI+CGITR
Sbjct: 206 RLTSFGFALGRLKTGTPPRLDGRTIDWQSLDMQSADEDPVPFSLMTDRITTPQIDCGITR 265

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D 
Sbjct: 266 TTPETHAIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDT 325

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q   ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K++GLF
Sbjct: 326 VYPNGISTSLPEDVQLDILKTIPGLEKAVMLQPGYAIEYDFIDPRELKRSLETRKVTGLF 385

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+AR+++  + +   RT++YIGVM+DDLTS+GV EPY
Sbjct: 386 LAGQINGTTGYEEAGAQGLLAGINAARRASGGEPVIIQRTEAYIGVMVDDLTSRGVSEPY 445

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTP+  +LG +G  R++RF       +  R L +SL +T
Sbjct: 446 RMFTSRAEFRLSLRADNADQRLTPLADRLGILGHARKERFEAREAALSKARVLTQSLTIT 505

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   +   QDG  R+AY+ LSYP+  +  L  I P+         E L+IE+ YA 
Sbjct: 506 PNLAKQYDLHLNQDGVRRSAYDLLSYPEIDLDRLMPIWPELDAIDPTAREALEIEAQYAV 565

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +   ++ EE+ LIP   D   +  LSNELK KL   KP  + +A +++GMTPA
Sbjct: 566 YMDRQKSDIAVMEREEQLLIPAGLDIDGISGLSNELKHKLKQRKPETIAEAQRVDGMTPA 625

Query: 605 ALNLLLIYIKKNTVKLNEIV 624
           AL LL+  IKK   +     
Sbjct: 626 ALALLIAQIKKFGYRNKAAA 645


>gi|254467057|ref|ZP_05080468.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium Y4I]
 gi|206687965|gb|EDZ48447.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacterales bacterium Y4I]
          Length = 624

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/603 (53%), Positives = 428/603 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIV+GGGHAG EAA  AA++G  TAL+T   + IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSAYDVIVVGGGHAGSEAAHAAARMGVRTALVTLNRNGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +YR  M R   +QENLD++
Sbjct: 61  EIDALDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRAIYRREMLRLTEAQENLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEV  F  + N ++ +++ D S I  ++V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 EGEVTDFLLQGNAVAGVILADGSEIPSNSVILTSGTFLRGVIHIGDVSKPGGRMGDKPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI WD  E Q  DE  + FSF+T   + +Q+ C
Sbjct: 181 KLAERLDSFGLPLGRLKTGTPPRLDGRTINWDILEAQPGDEDPVFFSFLTKAASAKQVSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG+
Sbjct: 241 GITHTNAKTHEIIQKNLGRSAMYGGHIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VYPNGIST+LP+++Q  ++ +I GLE+  I++PGYAIEYDY++P+ L   L  K +
Sbjct: 301 TDHTVYPNGISTSLPQDVQEDYVHSILGLEQAVILQPGYAIEYDYVDPRALTLELRLKDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG+VAG+N+AR S     + FSR++SYIGVMIDDLT+ GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGMVAGLNAARASLGEGPVSFSRSNSYIGVMIDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+ +++GC G++RQ  F +         S+L++
Sbjct: 421 AEPYRMFTSRAEFRLSLRADNADQRLTPLAIEIGCAGKQRQAAFLEKSDRLGQACSVLEA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K +S+  I   QDG  RT  E L++PD   +++  + P+       + ++++ ++
Sbjct: 481 KSFTPKQVSAAGIRVNQDGNRRTGMEVLAFPDVEFEDIVPLMPELEGIDPDIRQQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +K +E  +IP  + Y  +  LS EL++KLS+ +P  L QA++I+G
Sbjct: 541 LYANYIARQEREISAMKRDEGYVIPTGYSYDGIEGLSKELQQKLSLARPETLAQAARIDG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|91203577|emb|CAJ71230.1| similar to putative glucose inhibited division protein A
           [Candidatus Kuenenia stuttgartiensis]
          Length = 604

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 387/619 (62%), Gaps = 18/619 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVIV+G GHAGCEAA  +A++G +TAL++    T+  MSCNPAIGG+ KG LVRE
Sbjct: 1   MHTEFDVIVVGAGHAGCEAALASARMGLNTALLSINLDTVAQMSCNPAIGGIAKGQLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +V DA GIQFR+LN KKGPAV  PR QAD++ Y++ M++ +  Q+NL + Q
Sbjct: 61  IDALGGEMAQVIDATGIQFRMLNTKKGPAVHSPRAQADKKAYQITMKKRLEHQDNLFMKQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G     N  + +V Q     +   V+LTTGTFL+GVIHIG      GR+G+  S  
Sbjct: 121 EIADGLIVVDNKAAGVVGQSGLQYKSKAVILTTGTFLKGVIHIGNYITSGGRIGELSSER 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S      +  RLKTGT  RL+ +TI +   + Q  DE   PFSF T  ++  Q+ C 
Sbjct: 181 LSGSLRDLGLEVQRLKTGTSPRLNSRTINYKNLKPQHGDENPRPFSFSTKTLSGAQVPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH I+M N+  + +Y+G I + GPRYCPS+EDKIVRF ++  HQIFLEPEGL+
Sbjct: 241 ITYTNQTTHEIVMSNLNRAPLYTGQISTTGPRYCPSLEDKIVRFPDKLQHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NGIST++P ++Q + + +I GLE   I+R GYAIEYD++ P +L  +LETK + 
Sbjct: 301 TLEIYCNGISTSMPHDVQERIVHSIEGLEAAEIVRYGYAIEYDFVPPTQLKLSLETKAVE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+LAGQINGT+GYEEAAAQG++AGIN+A K ++ +     R+++YIGV+IDDL +KG  
Sbjct: 361 NLYLAGQINGTSGYEEAAAQGIMAGINAALKIHEKEPFILDRSEAYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FTSRAEYR+ LR DNAD RL   G K G I +++     +  +      + L   
Sbjct: 421 EPYRLFTSRAEYRLLLRQDNADRRLMKYGHKYGLISDQQWSTLQEKERLIAETLAYL--- 477

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FSSLVIERLQIE 539
                       ++K  G+   A + LS P+ +   L  I  +  +      V E+++IE
Sbjct: 478 ------------NYKTAGQDALA-KILSRPEQTFDQLLGIDSELAEKNVPGDVQEQVEIE 524

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  + ++ K  E   IP   DYS +  L  E ++KLS ++P +L QAS+I 
Sbjct: 525 IKYKGYIERQYSQIEKFKKMENHKIPDWLDYSHITELRREARQKLSQIRPLSLGQASRIS 584

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G++PA +++L+IY+ K   
Sbjct: 585 GVSPADISILMIYLAKKAR 603


>gi|28379976|ref|NP_786868.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum WCFS1]
 gi|308182179|ref|YP_003926307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38257498|sp|Q88RX6|MNMG_LACPL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28272817|emb|CAD65746.1| cell division protein GidA [Lactobacillus plantarum WCFS1]
 gi|308047670|gb|ADO00214.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 636

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/623 (42%), Positives = 361/623 (57%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDGLIVEDGVCKGVITNTGARYSAKSVVLTTGTAARGKIIIGELMYSSGPNNSQPAMKLS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
               +  F+  R KTGTP R+DG TI +  TE+Q  D     FSF T          Q+ 
Sbjct: 190 GDLERLGFNLERFKTGTPPRVDGNTIDYSVTEEQPGDPEPHHFSFETKDADYIDLKHQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKKRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L  TLETK 
Sbjct: 310 RNTDEWYVQGLSTSMPEEVQQRILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKATLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG
Sbjct: 370 VKNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALDRGQFTLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    Q        L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTDKGRELGLIDDERYAAFEAKRQAIKNELDRLG 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            + +   +  +  +     G+ +    A +FL  P+    +L    P A +     VIE+
Sbjct: 490 KIRIKPNDEVNAFLRAHNSGELKDGVLAADFLKRPEVQYADLMKFIPAAPEPLERHVIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  +       +K  E + IP   DY ++  L+ E  +KL  ++P  + QA
Sbjct: 550 VEIQIKYAGYIQKAEERVDRLKKMEAKKIPDRIDYDAIDGLATEAHQKLKKIQPTTIAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA + +L +YI++  +
Sbjct: 610 SRISGVNPADIAILSVYIQQGRI 632


>gi|262369744|ref|ZP_06063072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter johnsonii SH046]
 gi|262315812|gb|EEY96851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acinetobacter johnsonii SH046]
          Length = 626

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 389/619 (62%), Gaps = 6/619 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5   KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD  GIQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q  
Sbjct: 65  ALGGAMALAADKGGIQFRILNSRKGAAVRATRAQADRIRYKAAIRDTLENQANLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E + +  +V Q        TVVLT GTFL GVIH+G  K   GR GD PS SL 
Sbjct: 125 ADDLIVEGDTVKGVVTQTGIRFDAKTVVLTAGTFLGGVIHVGLEKSSGGRAGDPPSISLA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGI 242
           +   + +   GRLKTGTP R+D +++ +     Q  D      SFM D  +   Q+ C I
Sbjct: 185 HRLRELNLPVGRLKTGTPPRIDARSVDFSVMIPQPGDFPSPTMSFMGDASMHPEQVNCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II   +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T
Sbjct: 245 THTNEKTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFADKDSHQVFLEPEGLDT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+ 
Sbjct: 305 HELYPNGISTSLPFDVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINN 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEA AQGL+AG+N+AR++   +     R ++Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAGAQGLLAGLNAARRAWDQEQWTPKRDEAYMGVLVDDLITLGTKE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G ++G + + R   + + ++        L+ L 
Sbjct: 425 PYRMFTSRAEYRLMLREDNADQRLTPVGREMGLVDDVRWAAYCEKMEAVEQETGRLQHLW 484

Query: 483 LTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               N        ++     K  +A + L  P+ S   +  +     + S+ V ++++I 
Sbjct: 485 AAPNNPMGKKFVEMTGADLSKECSAIDLLKRPNISFAQIAELT--RSEVSAQVGDQIEIA 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++K  E+  IP DF+Y  +  LS E+  KL  ++P  L QA++I 
Sbjct: 543 VKYAGYINRQHEDVAQMKRLEETKIPADFNYDVVSGLSREITLKLKDVRPETLAQANRIP 602

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+TPAA+ L++I I+KN  
Sbjct: 603 GVTPAAVQLIMITIRKNAQ 621


>gi|329117673|ref|ZP_08246390.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parauberis NCFD 2020]
 gi|326908078|gb|EGE54992.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus parauberis NCFD 2020]
          Length = 632

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/628 (42%), Positives = 376/628 (59%), Gaps = 6/628 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDVIVIG GHAG EAA  A+++G +T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTEVYDVIVIGAGHAGVEAALAASRMGCNTLLATISLDMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKNLYSREMKHTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  ++          +VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 AIIDDILVEDGQVVGVLTATKQKFSAKSVVVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I +D+TE Q  D+    FSF++  +     QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSIDYDQTEIQPGDQAPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNSTSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYVQGLSTSLPEDVQKDLIHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKL 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F     ++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGREIGLVDDIRWDNFQIKKNQFENELKRLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  P+ S Q   S   P A   +  +I+ 
Sbjct: 485 SIKLKPIKETNEKVQALGFKPLTDAMTAKEFMRRPEISYQTAVSFVGPAAENLNPKIIDM 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           S+I G+ PA +++L++YI+ N     +I
Sbjct: 605 SRISGVNPADISILMVYIEGNGKARRKI 632


>gi|225626440|ref|ZP_03784479.1| glucose-inhibited division protein A [Brucella ceti str. Cudo]
 gi|225618097|gb|EEH15140.1| glucose-inhibited division protein A [Brucella ceti str. Cudo]
          Length = 658

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 31  FDVIVIGGGHAGYEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 91  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 150

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 151 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 210

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 211 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 270

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 271 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 330

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 331 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 390

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 391 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 450

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 451 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 510

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 511 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 570

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 571 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 630

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 631 VALLIAQIRK 640


>gi|85714096|ref|ZP_01045085.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
 gi|85699222|gb|EAQ37090.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
          Length = 623

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/618 (54%), Positives = 434/618 (70%), Gaps = 1/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++DVIVIGGGHAGCEAAA +A++GA TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MAATFDVIVIGGGHAGCEAAAASARIGARTALVTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGR+ADAAGIQFR+LN +KGPAVRGPR Q DR+LY  AMQ  I    NL+VI 
Sbjct: 61  VDALDGLMGRMADAAGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQVAIRETANLEVIV 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE          I  I + D    R + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADDLIISDGRIGGIRLIDGRQFRSAAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS MT +IT  QIECG
Sbjct: 181 LSRSFERIGFTLGRLKTGTPPRLDGATIGWAAVEMQPGDDPPEPFSVMTGRITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N++ S IYSG I S GPRYCPSIEDK+VRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTPATHEVIRVNVRRSPIYSGQITSSGPRYCPSIEDKVVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPE++Q   + TIPGLEKV + RPGYAIEYD+++P+EL PTL+T+++ 
Sbjct: 301 DPTVYPNGISTSLPEDVQLAILATIPGLEKVRMTRPGYAIEYDHVDPRELDPTLQTRRMP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D I F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAALGAGGGDPIVFDRADGYLGVMIDDLVTRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       I      ++L  SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGIALGCVGAGRAAHHRAKIAALRAAKALAMSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG  R+A+E LSYPD   + + +I P+       +   L+I++ 
Sbjct: 481 SVTPNEAACHGLSLNRDGHRRSAFELLSYPDIGWREVAAIWPELSAVDPKIAVHLEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  ++    DYS +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YDVYLKRQTADVEAFRRDEGLVL-TGIDYSVVPGLSNEARGRLEKAQPRTIGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPAAL +L  Y+++ T K
Sbjct: 600 TPAALGILAAYLRRETRK 617


>gi|293380886|ref|ZP_06626922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 214-1]
 gi|290922559|gb|EFD99525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus crispatus 214-1]
          Length = 634

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/620 (42%), Positives = 359/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 9   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 69  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 129 IVDELVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +    +QI C
Sbjct: 189 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESRDEDYLQKQISC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 249 WMTYTNPTTHTIIRNNLDRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDHHQIFLEPEGK 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 309 TTKEVYVGDFSTSMPEEIQLKMIHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 369 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I + R  RF +        ++ L  
Sbjct: 429 NEPYRLLTSRAEYRLILRNDNADLRLTEYGHDLGLISDERFARFEEKKHAIEDAKTRLHE 488

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+ +I ++  +  +       V E+++
Sbjct: 489 ITVHLTDEVQEFLQSIGQEPMKAGVKADVFLRRPNVTIADIERLTGEKVPGDRYVKEQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY+ +  L+ E ++K   ++P  L QA +
Sbjct: 549 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYNQIEGLATEARQKFEKIRPETLAQAER 608

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 609 ISGVNPADLAILSVYIQNGR 628


>gi|312865810|ref|ZP_07726032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus downei F0415]
 gi|311098685|gb|EFQ56907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus downei F0415]
          Length = 632

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/622 (42%), Positives = 375/622 (60%), Gaps = 6/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GHAG EAA  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTENFDVIVVGAGHAGVEAALAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAREMKHTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +            VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SLIDDILVEDGHVVGVETATGIKYGAKAVVVTTGTALRGEIILGELKYSSGPNNSLASIT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  K   + GR KTGTP R+   +I +++TE Q  D +   FSF++  +     QI 
Sbjct: 185 LADNLKKLGLEIGRFKTGTPPRVKASSINYEETEIQPGDGKPNHFSFLSRDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 245 CWLTYTNQSSHDIINKNLYRAPMFSGVVKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE+  ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RDTEEVYIQGLSTSLPEDVQRDLVHSIKGLEQAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLTPIG ++G + E R   +     +++     L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADIRLTPIGRQVGLVDEERWLNYEIKKAQFDNEMKRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           +  L      N    ++ FK      TA EF+  P+ S  ++   I P A   S  +IE 
Sbjct: 485 THKLKPTKDTNREVQAMGFKPLTDAVTAKEFMRRPEVSYADIIRFIGPAAENLSPKLIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNT 617
           S+I G+ PA +++L++Y++ N 
Sbjct: 605 SRISGVNPADISILMVYLEGNQ 626


>gi|319746160|gb|EFV98432.1| glucose inhibited division protein A [Streptococcus agalactiae ATCC
           13813]
          Length = 633

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/627 (42%), Positives = 371/627 (59%), Gaps = 7/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N      +VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 AMIDEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RHTEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 IAGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R   F K   ++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P  +                S VIE 
Sbjct: 485 SIKLKPVSETNKRIQELGFKPLTDALTAKEFMRRPQITYAVATDFVGCADEPLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVKLN 621
           S+I G+ PA +++L++Y++ +   + N
Sbjct: 605 SRISGVNPADISILMVYLEGRQKGRKN 631


>gi|76786721|ref|YP_330690.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae A909]
 gi|77407093|ref|ZP_00784094.1| glucose inhibited division protein A [Streptococcus agalactiae
           H36B]
 gi|123601023|sp|Q3JYG3|MNMG_STRA1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76561778|gb|ABA44362.1| glucose-inhibited division protein A [Streptococcus agalactiae
           A909]
 gi|77174300|gb|EAO77168.1| glucose inhibited division protein A [Streptococcus agalactiae
           H36B]
          Length = 633

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/627 (42%), Positives = 371/627 (59%), Gaps = 7/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N      +VV+TTGT LRG I +G+LK  +G      S +
Sbjct: 125 AMIDEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RHTEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 IAGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R   F K   ++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P  +                S VIE 
Sbjct: 485 SIKLKPVSETNKRIQELGFKPLTDALTAKEFMRRPQITYAVATDFVGCADEPLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVKLN 621
           S+I G+ PA +++L++Y++ +   + N
Sbjct: 605 SRISGVNPADISILMVYLEGRQKGRKN 631


>gi|229829506|ref|ZP_04455575.1| hypothetical protein GCWU000342_01598 [Shuttleworthia satelles DSM
           14600]
 gi|229791937|gb|EEP28051.1| hypothetical protein GCWU000342_01598 [Shuttleworthia satelles DSM
           14600]
          Length = 645

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/627 (42%), Positives = 376/627 (59%), Gaps = 7/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YDVIV+G GHAGCEAA   A+LG  T + T    ++  M CNP IGG  KGHLVRE
Sbjct: 19  VSENYDVIVVGAGHAGCEAALACARLGLETIIFTVSMDSVAMMPCNPHIGGSSKGHLVRE 78

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   D   +Q ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q
Sbjct: 79  IDALGGQMGINIDKTFLQSKMLNASKGPAVHSLRCQADKYRYSVEMRKTLQATDHLTLRQ 138

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV    TE    +       +  R   V+L TGT+L+     G +    G  G   +N 
Sbjct: 139 AEVTEILTENGRAAGCRTFSGASYRSKAVILATGTYLKARCLYGDVIEYTGPGGLRSANH 198

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L  S  K      R KTGTPAR++  +I + + + Q+ D  + PFSF TD   +   Q+ 
Sbjct: 199 LTASLEKLGIRLRRFKTGTPARIERSSIDFSRMQPQYGDSPVEPFSFTTDPASVQKEQVT 258

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN + HRI+ ENI  S IYSG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEG
Sbjct: 259 CYLTYTNEKGHRILRENIDRSPIYSGLIEGIGPRYCPSIEDKVVKFPDKSRHQLFVEPEG 318

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y +G S+++PE++Q+ F  TIPGLE   I R  YAIEYD I+  +L  +LE K+
Sbjct: 319 LDTSEMYISGASSSMPEDVQYDFYHTIPGLEHAKITRNAYAIEYDCIDANQLDASLECKE 378

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF  GQ NG++GYEEAAAQGL+AGIN+A K    + +   R+ SYIGV+IDDL +K 
Sbjct: 379 VPGLFAGGQFNGSSGYEEAAAQGLIAGINAAMKIQGKEALILDRSSSYIGVLIDDLVTKE 438

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RLTP+G ++G I E R +R        +  R  +K
Sbjct: 439 SFEPYRMMTSRAEYRLLLRQDNADLRLTPLGYQVGLISEDRYQRVRAKKLAIDRERERIK 498

Query: 480 SLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            + L      +  L S   S   +  + +  E +  P+ S Q L  + PD    +  V +
Sbjct: 499 GIRLGGSRQNNDLLRSWDSSPIPEDGSASLEELIRRPELSYQKLADLDPDRPPLAEDVCQ 558

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ+ + K  K  E++LIP + DY  +  L  E ++KLS ++P N+ Q
Sbjct: 559 QINIGVKYQGYIDRQIKQVKRFKKLEEKLIPGELDYEKVDNLRIEARQKLSRIRPKNIGQ 618

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLN 621
           AS+I G++PA +++L++YIK+   + +
Sbjct: 619 ASRISGVSPADISVLMVYIKQGKYRES 645


>gi|25012136|ref|NP_736531.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae NEM316]
 gi|77408891|ref|ZP_00785616.1| glucose inhibited division protein A [Streptococcus agalactiae
           COH1]
 gi|77413195|ref|ZP_00789393.1| glucose inhibited division protein A [Streptococcus agalactiae 515]
 gi|61224541|sp|P0A3F0|MNMG_STRA3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|61224542|sp|P0A3F1|MNMG_STRA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24413680|emb|CAD47760.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160735|gb|EAO71848.1| glucose inhibited division protein A [Streptococcus agalactiae 515]
 gi|77172482|gb|EAO75626.1| glucose inhibited division protein A [Streptococcus agalactiae
           COH1]
          Length = 633

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/627 (42%), Positives = 369/627 (58%), Gaps = 7/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YD+IV+G GHAG EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDIIVVGAGHAGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N      +VV+TTGT LRG I +G LK  +G      S +
Sbjct: 125 AMIDEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RYTEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 IAGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R   F K   ++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P  +                S VIE 
Sbjct: 485 SIKLKPVSETNKRIQELGFKPLTDALTAKEFMRRPQITYAVATDFVGCADEPLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVKLN 621
           S+I G+ PA +++L++Y++ +   + N
Sbjct: 605 SRISGVNPADISILMVYLEGRQKGRKN 631


>gi|254558110|ref|YP_003064527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum JDM1]
 gi|300769098|ref|ZP_07078987.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|254047037|gb|ACT63830.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum JDM1]
 gi|300493338|gb|EFK28517.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 636

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/623 (42%), Positives = 361/623 (57%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  RDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E  +   ++    +     +VVLTTGT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDGLIVEDGVCKGVITNTGARYSAKSVVLTTGTAARGKIIIGELMYSSGPNNSQPAMKLS 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIE 239
               +  F+  R KTGTP R+DG TI +  TE+Q  D     FSF T          Q+ 
Sbjct: 190 GDLERLGFNLERFKTGTPPRVDGNTIDYSVTEEQPGDPEPHHFSFETKDADYIDLKHQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II EN+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNETTHKIIRENLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKKRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L  TLETK 
Sbjct: 310 RNTDEWYVQGLSTSMPEEVQQRILHSIKGLEDAEMMRPGYAIEYDVVAPYQLKATLETKL 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG
Sbjct: 370 VKNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRALDRGQFTLKRSDAYIGVMIDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F    Q        L 
Sbjct: 430 TNEPYRLLTSRAEYRLILRHDNADLRLTDKGRELGLIDDERYAAFEAKRQAIKNELDRLG 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            + +   +  +  +     G+ +    A +FL  P+    +L    P A +     +IE+
Sbjct: 490 KIRIKPNDEVNAFLRAHNSGELKDGVLAADFLKRPEVQYADLMKFIPAAPEPLERHIIEQ 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  +       +K  E + IP   DY ++  L+ E  +KL  ++P  + QA
Sbjct: 550 VEIQIKYAGYIQKAEERVDRLKKMEAKKIPDRIDYDAIDGLATEAHQKLKKIQPTTIAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA + +L +YI++  +
Sbjct: 610 SRISGVNPADIAILSVYIQQGRI 632


>gi|81429489|ref|YP_396490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123563598|sp|Q38UF0|MNMG_LACSS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78611132|emb|CAI56185.1| Cell division protein GidA [Lactobacillus sakei subsp. sakei 23K]
          Length = 630

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 367/621 (59%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   HYDVIVVGAGHAGSEAALAAARMGRETLLLTINLDMVAFMPCNPSLGGPAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y   M+R I + E+L + QG  
Sbjct: 68  LGGQMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRTMKRTIETTEHLTLRQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   IV    +     +V+LT GT  RG I IG+L   +G     PS  L  
Sbjct: 128 ESLIVEDGVCKGIVTNTGARYSADSVILTAGTASRGKIIIGELTYSSGPNNSIPSIKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S     F   R KTGTP R+DG TI + KTE+Q  D+    FSF T        Q+ C +
Sbjct: 188 SLEDNGFVLTRFKTGTPPRVDGTTIDFSKTEEQPGDKEPNHFSFETPDSAYLKDQLSCWM 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH++I +N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG  T
Sbjct: 248 TYTNDTTHQVIRDNLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKPRHQIFLEPEGRET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           +  Y    ST++PEEIQH+ I +I GLE   ++RPGYAIEYD + P +L PTLETK +  
Sbjct: 308 EEYYVGDFSTSMPEEIQHKMIHSIEGLENAQMMRPGYAIEYDVVEPWQLKPTLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QGL+AGIN+A K    D     R+++YIGV+IDDL +KG  E
Sbjct: 368 LYTAGQMNGTSGYEEAAGQGLMAGINAALKQTGRDPFILDRSEAYIGVLIDDLVTKGTKE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   +           + L+ + 
Sbjct: 428 PYRLLTSRAEYRLMLRHDNADLRLTEKGHELGLINDDRFDSYEVKKAAVEAELARLEKIR 487

Query: 483 LTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L         L++   +  +DG    A +FL  P+    +L    P      + V+E+++
Sbjct: 488 LKPTPEIQAFLAAKGEAPLKDGV--LASDFLKRPEVKYADLIQFIPAVEGIDNRVVEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  ++  +  ++K  E + IP + DY ++  L+ E ++KL  ++P  L QAS+
Sbjct: 546 IQVKYAGYIDKEKAKIAKLKRMEAKKIPANIDYDAIEGLATEGRQKLQKIQPETLAQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA + +L +YI++  +
Sbjct: 606 IGGVNPADIGILSVYIQQGKI 626


>gi|27375744|ref|NP_767273.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bradyrhizobium japonicum USDA 110]
 gi|81170530|sp|Q89WP5|MNMG_BRAJA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27348882|dbj|BAC45898.1| glucose inhibited division protein A [Bradyrhizobium japonicum USDA
           110]
          Length = 626

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/621 (54%), Positives = 441/621 (71%), Gaps = 1/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            S+DVIVIGGGHAGCEAAA +A++GA+TAL+TH+ ST+G+MSCNPAIGGLGKGHLVRE+D
Sbjct: 6   ESFDVIVIGGGHAGCEAAAASARMGAATALVTHRFSTVGAMSCNPAIGGLGKGHLVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRV DA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I   E L VI+GE
Sbjct: 66  ALDGLMGRVGDAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQAAIRETEGLSVIEGE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  +  ++ + + D       ++V+TTGTFLRG+IH+G+   PAGR+G++P+  L 
Sbjct: 126 ADELIVVEGRVTGLRLADGREFGAGSIVVTTGTFLRGLIHLGEKNWPAGRVGEAPAMGLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +SF +  F  GRLKTGTP RLDG TI W   E Q  DE   PFS MTD+IT  QI+CGIT
Sbjct: 186 SSFERAGFTLGRLKTGTPPRLDGTTIDWSAVEMQPGDEPPEPFSVMTDRITTPQIQCGIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   TH +I  N+  S +YSG IKS GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+  
Sbjct: 246 RTTAATHEVIRANVHRSPMYSGQIKSSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDS 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LPEE+Q   + +IPGLE+V ++RPGYAIEYD+I+P+EL PTL+TK++ GL
Sbjct: 306 TVYPNGISTSLPEEVQLAILASIPGLERVKMVRPGYAIEYDHIDPRELDPTLQTKRLRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAA QG+VAG+N+A  ++      F R D Y+GVMIDDL ++G+ EP
Sbjct: 366 FLAGQINGTTGYEEAAGQGIVAGLNAALAASGAALTVFDRADGYLGVMIDDLVTRGISEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR DNAD RLT  G+ LGC+   R       ++  N  R+L KSL +
Sbjct: 426 YRMFTSRAEYRLTLRADNADQRLTEKGIALGCVRSARTLHHRTKMEALNAARTLSKSLTI 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        +S  +DG+ R+A+E ++YPD     + +I  +      ++   L+I++ Y 
Sbjct: 486 TPNEAIKHGLSLNRDGQRRSAFELMAYPDIGWSQVRAIWLELSAIDPVIATHLEIDAKYD 545

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  + +  + +E  ++ +  DY  +P LSNE++ KL   +PF + QA +I+GMTP
Sbjct: 546 VYLERQSADVEAFRRDEGLVLSE-VDYQLVPGLSNEVRAKLEKARPFTVGQAGRIDGMTP 604

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL +L  Y+++   K ++ +
Sbjct: 605 AALGILAAYLRREARKTSKAI 625


>gi|169333909|ref|ZP_02861102.1| hypothetical protein ANASTE_00295 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259474|gb|EDS73440.1| hypothetical protein ANASTE_00295 [Anaerofustis stercorihominis DSM
           17244]
          Length = 625

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 388/619 (62%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  +A+ G+ST L+T     +  M CNP+IGG GKGHLVREIDA
Sbjct: 7   EYDVIVIGAGHAGCEAALASARKGSSTLLLTLNLDALAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ + LN  KG AV+  R QAD++ Y+  M+  I + +NLD+ Q E 
Sbjct: 67  LGGEMGKNIDKTFIQTKTLNTAKGVAVQSLRAQADKKKYQEEMKFVIENTDNLDLKQQEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S ++    +M +   +V+ +GT+L+G I IG +    G  G  P+N L +
Sbjct: 127 VEILTEDGKVSGVITHTGAMYKTKAIVICSGTYLKGRIIIGDVSYSGGPNGIFPANKLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGI 242
           S  K  F   RLKTGTPAR++ ++I + K E QF D+ + PFSF  +          C +
Sbjct: 187 SLKKLGFKLLRLKTGTPARVNKRSIDFSKMEIQFGDKEITPFSFENEDKDLEYDEQPCYL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN +TH +I +N+  S +YSG+I   GPRYCPSIEDKIVRF ++  HQ+F+EPEGLNT
Sbjct: 247 AYTNEKTHEVINDNLHRSPLYSGNITGIGPRYCPSIEDKIVRFADKERHQLFVEPEGLNT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE++Q +F+RTI GLE V I+R  YAIEYD + P ++  +LE+K + G
Sbjct: 307 NEMYLQGMSSSLPEDVQVKFLRTIKGLENVEIMRVAYAIEYDAVEPTQIELSLESKIVKG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAAAQGL+AGIN+A      + +   R+ SYIGV+IDD+T+KG  E
Sbjct: 367 LFTAGQINGTSGYEEAAAQGLIAGINAANYVQNREPLILDRSSSYIGVLIDDITTKGTKE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSR EYR+ LR DNAD RLTP G + G I + R +R   Y +  N  ++ LK + 
Sbjct: 427 PYRMFTSRVEYRLLLRQDNADLRLTPYGFEQGLISKERYERLLGYEETVNKEKARLKEIK 486

Query: 483 LTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T     N+   SI       T T Y+ +  P  S  +      +  + S  V ++++I+
Sbjct: 487 ITPSNENNIKLESIGTTPLKNTITVYDLIKRPKISYDDTKIFDENRPELSRRVKQQVEIQ 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q     + K  EK+++P+D +Y+ +  L  E ++KL  ++P NL QAS+I 
Sbjct: 547 IKYHDYIIKQQASIDKFKSMEKKVLPEDINYNEIKNLRLEARQKLEDIRPKNLGQASRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G++P+ +N+LLI + KN  
Sbjct: 607 GVSPSDINVLLIELAKNKQ 625


>gi|281492460|ref|YP_003354440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376124|gb|ADA65615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Lactococcus lactis subsp. lactis KF147]
          Length = 625

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 375/621 (60%), Gaps = 8/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDV+VIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VRE
Sbjct: 3   FQENYDVVVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + Q
Sbjct: 63  IDALGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYATSMKNTVSDQENLTLRQ 122

Query: 122 GEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G V       EK  +  I     +     TV++TTGT LRG I IG+LK  +G      S
Sbjct: 123 GMVEELILDEEKKKVIGIKTSTGTKYGAKTVIITTGTALRGEIIIGELKYSSGPNNSLSS 182

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQ 237
             L ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     Q
Sbjct: 183 IGLADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDENYLKDQ 242

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T T   +H I+ +N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEP
Sbjct: 243 IPCWLTYTTENSHTILRDNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEP 302

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLET
Sbjct: 303 EGRNTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAQMMRPGYAIEYDVVMPHQLRPTLET 362

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +
Sbjct: 363 KLVSGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPEFILKRSEAYIGVMIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + + + +   + +++     
Sbjct: 423 KGTLEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDEQWEHYQAKMAQFDREMKR 482

Query: 478 LKSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           L S  L            + F       T  EFL  P+     +      A +     VI
Sbjct: 483 LNSEKLKPLPDTQEKLGKLGFGPIKDALTGAEFLKRPEVHYNEVIDFIGQAPEKIDRTVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L 
Sbjct: 543 ELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLG 602

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+ PA +++L++Y++
Sbjct: 603 QASRISGVNPADISILMVYLE 623


>gi|110677826|ref|YP_680833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter denitrificans OCh 114]
 gi|123172982|sp|Q16CZ6|MNMG_ROSDO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109453942|gb|ABG30147.1| glucose inhibited division protein A [Roseobacter denitrificans OCh
           114]
          Length = 623

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/623 (53%), Positives = 434/623 (69%), Gaps = 1/623 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M + + +DV+VIGGGHAG EAA  AA++G+ T LIT   S IG MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKHFDVLVIGGGHAGTEAAHAAARMGSQTGLITMSRSGIGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y   M      Q+NLD+
Sbjct: 61  REIDALDGVMGRVADQAGIQFRLLNRRKGPAVQGPRAQSDRAIYHNRMLEATDQQQNLDI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I GE   F  +   +  +V+QD++ I   TV+LTTGTFLRGVIHIG +    GRMGD  S
Sbjct: 121 IVGEAVDFVMDGERVIGVVLQDDAEILAKTVILTTGTFLRGVIHIGDVSRSGGRMGDKAS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L +    F    GRLKTGTP RL  K+I WD  E+Q  D+    FSF++  ++ RQ+ 
Sbjct: 181 VRLADRIDSFGLPMGRLKTGTPPRLSSKSINWDVLEEQPGDDEPTLFSFLSKGVSARQVS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN+ TH II +NI  SA+Y G I   GPRYCPSIEDKI+RF ++  HQIFLEPEG
Sbjct: 241 CGITHTNVRTHDIIRDNITRSAMYGGHIDGVGPRYCPSIEDKIIRFADKESHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNTD VYPNGIST+LP+++Q +++ +I GLEK  I++PGYAIEYDY++P+ L  +L    
Sbjct: 301 LNTDAVYPNGISTSLPQDVQSEYVHSIVGLEKAIILQPGYAIEYDYVDPRALDSSLSVLS 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQINGTTGYEEAAAQGLVAG+N++ ++   D I FSR+DSYIGVMIDDLT++G
Sbjct: 361 VPGLYLAGQINGTTGYEEAAAQGLVAGLNASLEARGSDPITFSRSDSYIGVMIDDLTTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V+EPYRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F   I+  +  R LL 
Sbjct: 421 VMEPYRMFTSRAEFRLSLRADNADQRLTPIGLALGCVSDERKQAFEVKIEALDRARRLLT 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
               T K      IS   DG  RTA + L++P+ S ++L  + P          ++++ E
Sbjct: 481 ESSYTPKQAGEAGISVSHDGSRRTAMQLLAFPNTSFKDLSLLDPVFDGIDVETQQQMERE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  +   +K +E   IP DFDY  L  LSNELK KL+  +P +L Q  +I+
Sbjct: 541 ALYATYIERQQKDVDLLKKDEGHKIPADFDYDQLSGLSNELKSKLNSTRPTSLAQVGRID 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           GMTPAAL L+L  +++++ K + 
Sbjct: 601 GMTPAALTLILAKLRQSSKKRSA 623


>gi|295090267|emb|CBK76374.1| glucose-inhibited division protein A [Clostridium cf.
           saccharolyticum K10]
 gi|295115465|emb|CBL36312.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SM4/1]
          Length = 641

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/628 (42%), Positives = 380/628 (60%), Gaps = 7/628 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+ V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEETYDIAVVGAGHAGCEAALAAARLGMETVVFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD+E+Y   M+R + + E+L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKEMYTREMRRVLENTEHLTIKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E+  ++ I     ++  C  VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVTEILAEEGRVTGIRTLSGAVYHCRAVVLATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKALGIEMYRFKTGTPARVDRRSIDFSKMEEQFGDDRVVPFSFTTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNERTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQTAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLRATLEFKA 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQGKEGIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I + R +R  +  Q+       L 
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSGIGHEIGLIDDERYERVLRKEQQIREEVERLN 483

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              + + +     +      +     T  E +  P+ S + +  I P        V E++
Sbjct: 484 RTPVGATHEVQECLKSYGSTELKTGSTLAELVRRPELSYEAVKEIDPKRPVLDWDVAEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ +  + K  E R + + FDYS++ +L  E  +KL++ KP N+ QAS
Sbjct: 544 NINIKYEGYIKRQLQQVAQFKKMESRKLDESFDYSTVKSLRKEAVQKLNLYKPRNIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIK--KNTVKLNE 622
           +I G++PA +++LL++++  K   + NE
Sbjct: 604 RISGVSPADISVLLVHLEQLKYQRERNE 631


>gi|297621984|ref|YP_003710121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Waddlia chondrophila WSU 86-1044]
 gi|297377285|gb|ADI39115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Waddlia chondrophila WSU 86-1044]
          Length = 613

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/617 (45%), Positives = 391/617 (63%), Gaps = 17/617 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAGCEAA  +A++GA T L+T    TIG MSCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVMGGGHAGCEAALASARMGAKTLLLTMNLDTIGKMSCNPAVGGIGKGHMVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D  GIQ+R+LN  KGPAV  PR QAD+  Y+  ++  +  QENL++ QG V 
Sbjct: 68  GGEMGKVIDCTGIQYRMLNATKGPAVWAPRAQADKAAYQFEIKHRLEKQENLEIHQGTVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +  ++       TVV+++GTF+RG++HIG+     GR GD PS  L   
Sbjct: 128 EIFVENDTVQGVATKEGIYFTAPTVVISSGTFMRGLLHIGERNFSGGRAGDQPSVGLSGC 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             K  F   RLKTGTP R++ ++I    TE+Q  +E  I FSF  + K    Q+ C IT 
Sbjct: 188 LKKLGFHLDRLKTGTPPRINKRSINLSLTEEQPGEEG-IRFSFDDEGKRKLPQVSCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET +II++NI  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEGL T+ 
Sbjct: 247 TTQETKQIILDNIHRSPLYSGKIQGVGPRYCPSIEDKVVRFSDKERHQLFLEPEGLQTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LP ++Q+ FI++IP L    I RP YAIEYDY+   ++ P+LE+KK+ GLF
Sbjct: 307 IYVNGISSSLPLDVQYAFIKSIPALRNAEITRPAYAIEYDYVTSGQIKPSLESKKVEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A K    + +   R++SYIGVMIDDL +KG+ EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLLAGINAASKVAGREPLILKRSESYIGVMIDDLITKGLDEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RL   G   G I ++R +      +   +  +  +     
Sbjct: 427 RMFTSRAEHRLLLRQDNADLRLRKYGYAYGLIDQKRWETLCLKAETIEWEMTRFEKT--- 483

Query: 485 SKNLSSTSISFKQ-DGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESSY 542
                     FKQ +GK  +  + L  P+ + ++L    P+A       +  ++++   Y
Sbjct: 484 ----------FKQVNGKGFSLAQLLRRPEMTYESLLETYPEAVVDHGEEINFQIELNLKY 533

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ  E + I   E   +P+ FD++ +  L NE K+KL    P  L QAS+I G++
Sbjct: 534 SGYISRQNTEIERISQVENLRVPEHFDFNQVSGLRNEAKQKLCRHNPLTLGQASRISGVS 593

Query: 603 PAALNLLLIYIKKNTVK 619
           PA +++L++ + K   +
Sbjct: 594 PADISVLIVELTKRERQ 610


>gi|153008195|ref|YP_001369410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ochrobactrum anthropi ATCC 49188]
 gi|166222712|sp|A6WX77|MNMG_OCHA4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151560083|gb|ABS13581.1| glucose inhibited division protein A [Ochrobactrum anthropi ATCC
           49188]
          Length = 636

 Score =  757 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/610 (59%), Positives = 450/610 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I +Q+NL V++G   
Sbjct: 69  DGLMGRVADEAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQKMIAAQDNLFVVEGGAH 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ +V+ D   + C  VVLTTGTFL G+IHIG+ KIPAGRMG+ P+  L   
Sbjct: 129 DLREEHGRITGVVLSDGRTLSCGAVVLTTGTFLNGLIHIGEKKIPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
              F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QI+CGITRT
Sbjct: 189 LTSFGFALGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITIPQIDCGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH +I  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHAVIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q   ++TIPGLE   +++PGYAIEYD+I+P+EL  +LET+K++GLFL
Sbjct: 309 YPNGISTSLPEDVQLDILKTIPGLETAAMLQPGYAIEYDFIDPRELKRSLETRKVTGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AGIN+AR+++  D +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGINAARRASGGDPVIIQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  KLG +G  R++RF       +  RSL +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADKLGILGHARKERFEARETALDEARSLTQSLTITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              S   +   QDG  R+AY+ LSYP+  +  L SI P+         E L+IE+ YA Y
Sbjct: 489 NLASRYDLRLNQDGVRRSAYDLLSYPEIDLDRLKSIWPELGAVDPATREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D   +  LSNELK KL   +P  + +A +++GMTPAA
Sbjct: 549 MDRQKSDIAVMEREEQLLIPAGLDIDGISGLSNELKHKLKQRRPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           L LL+  IKK
Sbjct: 609 LALLIAQIKK 618


>gi|294851290|ref|ZP_06791963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. NVSL 07-0026]
 gi|294819879|gb|EFG36878.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella sp. NVSL 07-0026]
          Length = 636

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/610 (58%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGP TQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPHTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D+ +++C  VVLTTGTFL G+IHIG+ + PAGRMG  P+  L   
Sbjct: 129 DLVCDGERISGVTLADDRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGGKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  E L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTREALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++GMTPAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGMTPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|166368239|ref|YP_001660512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Microcystis aeruginosa NIES-843]
 gi|189039347|sp|B0JGQ4|MNMG_MICAN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166090612|dbj|BAG05320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Microcystis aeruginosa NIES-843]
          Length = 635

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/622 (41%), Positives = 360/622 (57%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDEFDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANLVIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  +     +      V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 AMATDLILGANEQVLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + + E Q  D+ +  FSF  +  I   Q+ 
Sbjct: 189 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSRMEPQPPDDEVRWFSFDPEVWIEREQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT   TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CHLTRTTAATHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++R  YA+EYDY+   + +PTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENVQLAMLRTLPGLENCVMLRAAYAVEYDYLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+AR +   + I F R +SY+G ++DDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGLVAGINAARFALGKELIVFPREESYLGTLVDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I  RR + F          +  L 
Sbjct: 429 LREPYRMLTSRSEYRLVLRSDNADQRLTPLGREIGLIDNRRWQLFQSKQANIIAEKERLH 488

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +  ++  + +I   + ++   + +  + L  P     +L          +    E +
Sbjct: 489 ETRIKERDQVAIAIVKDTEQKIKGSLSLADLLRRPSLHYLDLDRYGLGNPDINLAEREGV 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQ  +  +I     R +  D DY  +  LS E +EKL+ +KP  + QAS
Sbjct: 549 EIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKIKPATIGQAS 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +N LL+Y++   +
Sbjct: 609 RIGGVNPADINALLVYLEMRQM 630


>gi|327398258|ref|YP_004339127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Hippea maritima DSM 10411]
 gi|327180887|gb|AEA33068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Hippea maritima DSM 10411]
          Length = 628

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/618 (43%), Positives = 382/618 (61%), Gaps = 7/618 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAGCEA+ + A+LG +T L+T    +IG+MSCNPAIGGL KGHLV+E+D
Sbjct: 5   KRYDVIVIGGGHAGCEASLINARLGLNTLLLTIALDSIGAMSCNPAIGGLAKGHLVKEVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M R  D  G+QF++LN  KGPAV   R QAD   Y+L M+  +  Q++LD+ Q  
Sbjct: 65  IFGGEMARNIDETGLQFKILNRSKGPAVWSSRAQADMTAYKLRMKYTLERQDHLDIKQET 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +     +   C+ VV+TTGTF++G I IG  +  AGR  + PS  L 
Sbjct: 125 VDEIIVEDNRVVGVKTHLGNEYYCNAVVVTTGTFMKGKIFIGLNEYEAGRAWEPPSRKLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +S  +      RLKTGT  RLD +TI +D    Q  D+  +PFSF T ++    + C +T
Sbjct: 185 DSLRRLGLRVSRLKTGTTPRLDARTIDFDALIPQPGDDDPVPFSFRTKQLNRPNVPCYLT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I++N+  S +YSG ++S GPRYCPSIEDK+V+F E+  HQIFLEP+   + 
Sbjct: 245 YTNERTHEVILKNLDQSPLYSGMVESVGPRYCPSIEDKVVKFFEKKQHQIFLEPQDEKST 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y +G+ T++  E+Q  F+RTI GLEKV I+RPGYAIEYD+++P +L  +LETKKI GL
Sbjct: 305 EIYADGLHTSMGYEVQLNFLRTIKGLEKVEIMRPGYAIEYDFVDPTQLKHSLETKKIRGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGT+GYEEAAAQG+VAGIN+A    + +     R ++Y GV+IDDL +KG  EP
Sbjct: 365 FLAGQINGTSGYEEAAAQGIVAGINAAFYLMEKEPFILRRDEAYTGVLIDDLVTKGTKEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DN   RL     K G + +   +   +   +       LK+  +
Sbjct: 425 YRMFTSRAEYRLILREDNTHLRLAEKSFKAGLLDKEEFEMIQEQKTKIEETIKKLKTTHI 484

Query: 484 -----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                T+K L                 + L   + +   L  + P+  +  + + + ++I
Sbjct: 485 FPTEDTNKKLKELGTEI--IKTKTDLAKLLRRTEVNYDKLRELLPELEELDNYIKQEVEI 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y   Q  + ++ K  E   IP++FDY+ +  LSNE++ KL  +KP ++ QA +I
Sbjct: 543 DIKYEGYLTLQKQQIEKFKKYENMKIPENFDYTKVGGLSNEVRGKLMEVKPTSIGQAMRI 602

Query: 599 EGMTPAALNLLLIYIKKN 616
            G+TPAA+++L+IY+KK+
Sbjct: 603 SGVTPAAISILMIYLKKH 620


>gi|295094323|emb|CBK83414.1| glucose-inhibited division protein A [Coprococcus sp. ART55/1]
          Length = 621

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/605 (42%), Positives = 365/605 (60%), Gaps = 5/605 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++N  YDV+V+G GHAGCEAA  +A+LG +T + T    ++  M CNP +GG  KGHLVR
Sbjct: 3   VLNEEYDVVVVGAGHAGCEAALASARLGLNTIIFTVSMDSVAMMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D   IQ ++LN  KGPAV   R QAD+  Y   M+  + + +NL + 
Sbjct: 63  EIDALGGEMGKNIDKTYIQSKMLNASKGPAVHSLRAQADKANYSRTMKHTLENTDNLTLR 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV+    E N++  +     +      VVL TGT+L+     G +    G  G   +N
Sbjct: 123 QAEVSEIIIEDNVVKGVKTYSGATYFAKAVVLCTGTYLKARCIYGDVVYHTGPNGLMAAN 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQI 238
            L +S      +  R KTGTPARLD +TI + + E+Q  DE+++PFSF   +  I   QI
Sbjct: 183 YLSDSMKNAGIEIRRFKTGTPARLDKRTIDFSQMEEQKGDEKIVPFSFTNTEADIRRDQI 242

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  TN +TH II +NI  S ++SG I+  GPRYCPSIEDK+ +F ++  HQIF+EPE
Sbjct: 243 SCWLCYTNEKTHEIIRDNIDRSPLFSGVIEGTGPRYCPSIEDKVTKFPDKTRHQIFIEPE 302

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  T+ +Y  G+S++LPE++Q++ I ++ GLE   IIR  YAIEYD IN   L P+LE K
Sbjct: 303 GEYTNEMYMGGMSSSLPEDVQYEMIHSMKGLENAKIIRNAYAIEYDCINAINLKPSLEFK 362

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +SGLF AGQING++GYEEAAAQG++AGIN+ARK    + +   R+ +YIGV+IDDL +K
Sbjct: 363 SVSGLFGAGQINGSSGYEEAAAQGIMAGINAARKVQGKEAVVLDRSQAYIGVLIDDLVTK 422

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
              EPYRM TSRAEYR+ LR DNAD RLT IG ++G I ++R   F K  Q+       L
Sbjct: 423 ETSEPYRMMTSRAEYRLLLRQDNADLRLTEIGHEIGLIDDKRYAAFTKKRQQIMDEIQRL 482

Query: 479 KSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +S ++ + +       ++         +  E +  P+ S + +  I     K    VIE+
Sbjct: 483 ESTMVGANSTIQKFLENLGSTGLKTAASLAELIRRPELSYEAIDPIDEGITKLPDDVIEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  RQ  +  + K  EK+ +P D DY+ +  L  E ++KLS+++P N+ QA
Sbjct: 543 INITIKYQGYIDRQNQQVNQFKKLEKKKLPADIDYNDISNLRIEARQKLSLIRPENIGQA 602

Query: 596 SKIEG 600
           S+I G
Sbjct: 603 SRISG 607


>gi|163791743|ref|ZP_02186130.1| glucose-inhibited division protein A [Carnobacterium sp. AT7]
 gi|159872985|gb|EDP67102.1| glucose-inhibited division protein A [Carnobacterium sp. AT7]
          Length = 631

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 373/619 (60%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  AA++G+ T LIT     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NFDVIVVGAGHAGSEAALAAARMGSQTLLITINLDMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ +Y   M++ I   ENL + QG  
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFMYANEMKKTIEETENLVLRQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   I+    ++ R   V+LT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 DELIIEDGICKGIITNTGAIYRSKAVILTAGTSSRGQIIIGELKYSSGPNNSQPSIKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S ++  F+  R KTGTP R+   TI +  TE+Q  DE+   FS+ T        Q+ C +
Sbjct: 188 SLLENGFELNRFKTGTPPRVKSSTIDYSVTEEQPGDEKPNHFSYETPNSAYLKDQLSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+ I +N+  + +++G ++  G RYCPSIEDK+VRF ++  HQ+FLEPEG NT
Sbjct: 248 TYTNEATHQKIQDNLHRAPMFTGIVEGVGARYCPSIEDKVVRFSDKPRHQLFLEPEGRNT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L P+LETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQQDIIHSIEGLENAEMMRTGYAIEYDVVTPHQLRPSLETKIVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A K    +     R++ YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGINAALKVQGKEPFVMKRSEGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F     ++      L S+ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADFRLTEIGHEIGLVTKERYDTFVAKKAQFEGEIERLGSIR 487

Query: 483 LTS-KNLSSTSISFKQ--DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L     + S  I   Q        A +FL  P+ S Q+L +  P   +    V E+++I+
Sbjct: 488 LKPTTEIQSYLIENNQAPLKDGILAKDFLRRPEVSYQDLLAFVPRDYELPLAVEEQVEIQ 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +  ++K  E + IP++ DY+S+  ++ E KEKL  ++P  + QAS+I 
Sbjct: 548 VKYEGYIAKAAQKVDKLKRMENKRIPENIDYASINGIATEAKEKLIKIQPETIAQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++L++Y+++  +
Sbjct: 608 GVNPADISILMVYVEQGKI 626


>gi|291543432|emb|CBL16541.1| glucose-inhibited division protein A [Ruminococcus sp. 18P13]
          Length = 650

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/623 (42%), Positives = 371/623 (59%), Gaps = 5/623 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+VIVIG GHAG EAA  +A+LG  TA+ T     I +M CNP+IGG  KGHLVREIDAL
Sbjct: 28  YEVIVIGAGHAGVEAALASARLGCRTAMFTISLDQIANMPCNPSIGGTAKGHLVREIDAL 87

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ ADA  IQ R+LN  KGPAV   R QADR  Y   M++    + NLD+ QGEV 
Sbjct: 88  GGEMGKAADATFIQSRMLNRGKGPAVHSLRVQADRVAYHCYMKQVCEQEPNLDIKQGEVV 147

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              TE   +  I  +  ++     VV++TGT+LRG+IH+G+    +G     PS  L  S
Sbjct: 148 EILTENGAVCGIRTRLGTVYATRAVVISTGTYLRGLIHVGEASYQSGPDAALPSIQLSES 207

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITR 244
                    R KTGTP R+  ++I +DK E+Q  D  ++PFSF +D      ++ C I  
Sbjct: 208 LRALHVPLRRFKTGTPCRVHRRSIDFDKLERQDGDPDIVPFSFASDASRMQNRVSCYIAY 267

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GLNTD 
Sbjct: 268 TNAQTHAVIRANLHRSPMYSGRIEGVGPRYCPSIEDKIVRFPDKERHQLFVEPMGLNTDE 327

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+S++LPEE+Q  F+RTI GLE V I+RP YAIEYD  +P  L P+LE + + GLF
Sbjct: 328 YYLQGMSSSLPEEVQLAFLRTIVGLEHVEIMRPAYAIEYDCCDPTALSPSLEFRGLHGLF 387

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGL+AGIN+AR     + +   R  +YIG +IDDL +KG  EPY
Sbjct: 388 GAGQFNGSSGYEEAAAQGLMAGINAARLVQGKEPVILDRGTAYIGTLIDDLVTKGCNEPY 447

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RL+ IG  +G + E R           +     ++   + 
Sbjct: 448 RMMTSRSEYRLILRQDNADQRLSRIGHSIGLLSEERYAALRAKETAISREIKRVQHCNIA 507

Query: 485 SKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +  +   T+             + +  P      L    PD       V +++++E  
Sbjct: 508 PSDAFADFLTNHGTTPLTTGCKLADLIRRPQLGYSMLAPFDPDRPVLPEDVGQQVELEIK 567

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  +Q+ +  +++  E++L+P D DYS +  L  E  EKL+  +P N+ QAS+I G+
Sbjct: 568 YAGYIEKQLAQVAQMRGLEEKLLPNDADYSQVRGLRLEAAEKLNRQRPINIGQASRISGV 627

Query: 602 TPAALNLLLIYI-KKNTVKLNEI 623
           +PA +++LL+++ ++      E+
Sbjct: 628 SPADISVLLVWLSQRGKQNAAEV 650


>gi|116493569|ref|YP_805304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pediococcus pentosaceus ATCC 25745]
 gi|122264967|sp|Q03D60|MNMG_PEDPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116103719|gb|ABJ68862.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Pediococcus pentosaceus ATCC 25745]
          Length = 637

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/625 (43%), Positives = 374/625 (59%), Gaps = 12/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP+IGG  KG +VREID
Sbjct: 10  REYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M++ I ++ NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  +   ++    +  +  +VVLT GT  RG I IG+L+  +G      +  L 
Sbjct: 130 VDDLIVEDGVCKGVITNTGARYQAKSVVLTLGTAARGKIIIGELQYSSGPNNSQAALELT 189

Query: 184 NSF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQI 238
            +   K+ FD  R KTGTP R+DG TI +D+TE+Q  DE    FSF T          Q+
Sbjct: 190 KNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDSKYIELKNQL 249

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPE
Sbjct: 250 SCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPE 309

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G  TD  Y  G+ST++PEE+Q Q + +I GLE+  ++RPGYAIEYD + P +L  TLETK
Sbjct: 310 GRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPYQLKNTLETK 369

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  L+ AGQ NGT+GYEEAA QGL+AGIN+ R++   + +   R+D+YIGVMIDDL +K
Sbjct: 370 LVKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKEPLTLKRSDAYIGVMIDDLVTK 429

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+ TSRAEYR+ LR DNAD RLT +G  LG + +     F +  Q+       L
Sbjct: 430 GTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQDIKDELQRL 489

Query: 479 KSLVLTSKN----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVI 533
             + +        L S   +  +DG    A EFL  P+ +  +L              VI
Sbjct: 490 SEIRIKPSQVQKFLESKGSNGLKDGV--LASEFLRRPEVNYSDLLKFIDAPEKDLDRRVI 547

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE+ YA Y  +       +K  E++ IP   DY ++  L+ E ++KL  ++P  + 
Sbjct: 548 EQVEIETKYAGYIKKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEKIRPTTIA 607

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QAS+I G+TPA + +L +YI++  +
Sbjct: 608 QASRISGVTPADIAILSVYIQQGKI 632


>gi|71083057|ref|YP_265776.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|81170565|sp|Q4FNR6|MNMG_PELUB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71062170|gb|AAZ21173.1| glucose inhibited division protein A [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 623

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/616 (53%), Positives = 432/616 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S++V+VIGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVRE+DA
Sbjct: 6   SFEVVVIGGGHAGCEAAAASARLGINTALFTHKIETIGEMSCNPAIGGLGKGHLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAV+GPRTQ+DR LYR  MQ ++L+  NL V    V
Sbjct: 66  LDGVMGDVADKSGIQFRLLNRSRGPAVQGPRTQSDRSLYRKYMQEKLLNYCNLSVFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F   KN IS         I C  ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IKFIFNKNTISGFETNSGKKILCGKLILTTGTFLNGLIHIGDERTPAGRFNEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K+DF  GRLKTGTP RLD +TI +D  E+QFADE    FSF+T K  N+QI C +T 
Sbjct: 186 QLEKYDFKIGRLKTGTPPRLDARTIKYDNLEEQFADEDPYFFSFLTKKNLNKQISCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+K SA+YSG I+  GPRYCPSIEDKIV+F +++ HQI+LEPEGLN   
Sbjct: 246 TNEKVHKIIQKNLKRSAMYSGSIQGVGPRYCPSIEDKIVKFADKDRHQIYLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q +    I GLE V IIRPGYAIEYDYI+P+ELF TLETKKI  L+
Sbjct: 306 IYPNGISTSLPEDVQQEICNNISGLENVKIIRPGYAIEYDYIDPRELFLTLETKKIQNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    K +     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSFKKQEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G+++G I + R+  F    ++   +  ++   +++
Sbjct: 426 RMFTSRAEYRLSLRADNADQRLTNKGIEIGLISKEREDIFKDKEKKLGIISKIMGESLIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              + S +I   +DG  R + E L+    +++ +  I P+   F   + E+++I + Y  
Sbjct: 486 PTKIKSFNIKIAKDGILRKSNEILTQKGVNMKKIREIWPEIPYFDKKIDEQIEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP++ +Y  L  LSNE+K K + +KP  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLVIPENVNYDDLSGLSNEVKAKFNQIKPKTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVKL 620
           A+ +LL ++K+ ++KL
Sbjct: 606 AVYILLSHVKRKSIKL 621


>gi|328463991|gb|EGF35489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus helveticus MTCC 5463]
          Length = 661

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/620 (42%), Positives = 361/620 (58%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDQLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I
Sbjct: 307 TTKEVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHE 486

Query: 481 LVLT-SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +  S ++     SI  +       A  FL  P+  I ++  +  +       V E+++
Sbjct: 487 ITVHLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|319409464|emb|CBI83113.1| glucose inhibited division protein A [Bartonella schoenbuchensis
           R1]
          Length = 622

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/621 (55%), Positives = 445/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAGCEAA+ +A++GA TAL+T++ S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QLYDVIVVGGGHAGCEAASASARVGAKTALVTYQISELGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+ ADAAGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q  +  QENL +I+ E
Sbjct: 62  ALGGLMGQAADAAGIQFRLLNRRKGPAVRGPRTQADRQLYKRAIQGFLQKQENLKLIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +S + ++    I    VVLTTGTFLRG+IHIG     AGRMG+  S  L 
Sbjct: 122 VIDLIVENDHVSGVCLKKQGNIFSKAVVLTTGTFLRGLIHIGDKTWHAGRMGEQSSMQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               ++D   GRLKTGTP RL  KTI WD   KQ ADE  +PFSF+T+KI   QIEC IT
Sbjct: 182 ERLKEYDIKLGRLKTGTPPRLSKKTIRWDILPKQQADEYPVPFSFLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPSIEDKI++FGER+GHQIFLEPEGL++D
Sbjct: 242 RTNTQTHQIISENIHRSALYSGAIEGLGPRYCPSIEDKIIKFGERDGHQIFLEPEGLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++YPNGIST+LPE+IQ  F++TI GLE + +++PGYAIEYD+++PK+L  TLE K + GL
Sbjct: 302 IIYPNGISTSLPEDIQISFLKTIEGLENITVLQPGYAIEYDFVDPKQLTRTLELKSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+AR+   L  I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARQVGGLKEIILSRSMAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G I + R   +    +  +  RS+ + L L
Sbjct: 422 YRMFTSRAEFRLSLRADNADARLTPLAQQWGIISDTRWNLYQHKQKCLDQARSICQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+ LSYP  +I+ L S  P  +   +  +E L+IE+ YA
Sbjct: 482 TPNEASAHGLHINHDGVRRSAYDLLSYPGMNIERLSSFWPQLQSIDAKTVETLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E+  IP   D  ++  LSNELK K+    P ++  A KI+GMTP
Sbjct: 542 VYLERQAQDIAVLQRDERLEIPASLDIQAISGLSNELKTKIQQSSPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L++  I++   +  +  
Sbjct: 602 AALSLIITSIQRQRREKAKSA 622


>gi|300864991|ref|ZP_07109821.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oscillatoria sp. PCC 6506]
 gi|300336992|emb|CBN54971.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Oscillatoria sp. PCC 6506]
          Length = 634

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/622 (42%), Positives = 366/622 (58%), Gaps = 5/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D+IV+G GH+GCEAA  AA+L   T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDHFDIIVVGAGHSGCEAALAAARLNCRTLLLTLNLDKIAWQPCNPAVGGPAKTQLTNE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q+NL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQDNLSIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V        + I  +         C  V+LTTGTFL G+I +G   +PAGR G+  + 
Sbjct: 129 SMVTDLVLGANDEIIGVETYFGVAFGCKAVILTTGTFLGGIIWVGNKSMPAGRAGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  K  F+TGRLKTGTPAR+D +++ +   E Q  D  +  FSF  D  I   Q+ 
Sbjct: 189 GLTETLNKLGFETGRLKTGTPARVDKRSLNYTNLEPQPGDADVRWFSFDPDVWIEREQMP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF +++ HQIF+EPEG
Sbjct: 249 CYLTRTTPETHRLIRENLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKDSHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +RT+PGLE   ++RP YA+EYDY+   + FPTL TKK
Sbjct: 309 RDIPELYIQGFSTGLPENLQLQMLRTLPGLENCVMLRPAYAVEYDYLPATQCFPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAG+N+AR  N  + I F R  SY+G +IDDL +K 
Sbjct: 369 IEGLFCAGQVNGTTGYEEAAAQGIVAGVNAARFVNHQEMIVFPREHSYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR + F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWELFQRKQANIIAEKERLY 488

Query: 480 SLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  +        +I     +    + T  + L  P F  ++L               E  
Sbjct: 489 STRVKEGEEVGKAILADMQQSIKGSITLADLLRRPGFHYEDLERYNLANSNLELAEKEGA 548

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  ++   E R +P D DY ++  LS E +EKL+ +KP  + QA+
Sbjct: 549 EIDIKYSGYLQRQQHQIDQVSKHEHRQLPPDLDYMTIETLSKESREKLATVKPLTIGQAA 608

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ PA +  LLIY++  + 
Sbjct: 609 RIGGVNPADVTALLIYLEMRSR 630


>gi|315185860|gb|EFU19625.1| glucose inhibited division protein A [Spirochaeta thermophila DSM
           6578]
          Length = 619

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/613 (45%), Positives = 384/613 (62%), Gaps = 2/613 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA  A++LG +T LIT    TIG MSCNPA+GGL KG++VRE+DAL 
Sbjct: 4   DVIVIGGGHAGIEAALAASRLGCTTLLITQLLDTIGKMSCNPAVGGLAKGNIVREVDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MGR+ D   IQFR+LN  +GPAV+ PR QAD++ Y    +  +  Q+ L + Q  V  
Sbjct: 64  GEMGRLIDRTMIQFRMLNRSRGPAVQCPRAQADKQAYAQRAKWSLEQQKGLFLFQDTVVD 123

Query: 127 FNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           F  +     I  +V +         VVLTTGTF+   I IG+ + P GR+G+  +  L  
Sbjct: 124 FVLDEAGREIRGVVTERGRRFHARKVVLTTGTFMEAKIFIGEYETPGGRLGEPAACGLGG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F  GRLKTGTPAR+   ++ + K ++Q  DE +IPFSF  D +  RQ+ C IT 
Sbjct: 184 VLRRLGFTVGRLKTGTPARVLRSSLDFSKMQEQPGDEEIIPFSFSHDTLEVRQVPCYITF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +Y G I   GPRYCPS+EDK+VRF +R+ HQ+F+EPEGL+T+ 
Sbjct: 244 TTPETHRIIRENLHRSPLYGGRIVGRGPRYCPSLEDKVVRFPDRDRHQVFVEPEGLSTEE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LPEE+Q  FI TIPGLE   I+RPGYA+EYDY+ P +L+PTLETK+I GL+
Sbjct: 304 MYLNGISSSLPEEVQEAFIHTIPGLEHAVIMRPGYAVEYDYVEPTQLYPTLETKRIRGLY 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQ NGT+GYEEA  QGLVAGIN+A        +   R ++YIGV+IDDL +KG  EPY
Sbjct: 364 IAGQTNGTSGYEEAGGQGLVAGINAALACRGEPPLVLGRDEAYIGVLIDDLVTKGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR D AD RL     ++G        R  + I   + ++ LL+   LT
Sbjct: 424 RMFTSRAEYRLALRHDTADIRLLEKAYRIGLQSREMFDRLQEKIHVLDAIKELLRQRRLT 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            +      +        +  Y+ L  P  ++ +L  + P+  K+    +   +I+  Y  
Sbjct: 484 QEEAERRGLPQLAPHVGKPLYQVLKDPRVTLDDLAFLVPELSKYPRPWVRTAEIDVKYEG 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  R+    ++ +  E   IP  FDYS +  LS+E +EKLS ++P +L QAS+I G+  +
Sbjct: 544 YLLREQQMVEKFRKMEDMRIPDHFDYSEVEGLSSEAREKLSTIRPLSLGQASRISGIRSS 603

Query: 605 ALNLLLIYIKKNT 617
            + +L++Y+ ++ 
Sbjct: 604 DIAVLMVYLSRSR 616


>gi|256112385|ref|ZP_05453306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brucella melitensis bv. 3 str. Ether]
 gi|265993821|ref|ZP_06106378.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 3 str. Ether]
 gi|262764802|gb|EEZ10723.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Brucella melitensis bv. 3 str. Ether]
          Length = 636

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/610 (57%), Positives = 453/610 (74%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG MSCNPAIGGLGKGHLVREIDAL
Sbjct: 9   FDVIVIGGGHAGCEAASAAARAGARTALVTHRFDTIGVMSCNPAIGGLGKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ+ I  QENL V++G  A
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQQMITEQENLTVVEGGAA 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   IS + + D  +++C  VVLTTGTFL G+IHIG+ + PAGRMG+ P+  L   
Sbjct: 129 DLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEKPALGLSER 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            + F F  GRLKTGTP RLDG+TI W   + Q ADE  +PFS MTD+IT  QIECGITRT
Sbjct: 189 LLSFGFTLGRLKTGTPPRLDGRTIDWQSLDMQSADEEPVPFSLMTDRITTPQIECGITRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH II  N+  SA+YSG I+  GPRYCPS+EDKIV+FG+R+GHQIFLEPEGL+ D V
Sbjct: 249 TPETHDIIRANLHRSAMYSGSIEGIGPRYCPSVEDKIVKFGDRDGHQIFLEPEGLDDDTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LPE++Q + ++TIPGLEK  +++PGYAIEYD+I+P+EL  +LET+K+ GLFL
Sbjct: 309 YPNGISTSLPEDVQLEILKTIPGLEKAVLLQPGYAIEYDFIDPRELKRSLETRKVCGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQGL+AG+N+AR++   + +   RT++YIGVM+DDLTS+GV EPYR
Sbjct: 369 AGQINGTTGYEEAGAQGLLAGLNAARRAAGSEPVILQRTEAYIGVMVDDLTSRGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+  ++G + E R+KR+       +  R + +SL +T 
Sbjct: 429 MFTSRAEFRLSLRADNADQRLTPLADEVGILSEERRKRYLTRETALSHARMVTQSLSITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                  +   QDG  R+AY+ LSYPD ++  L +I P+      +  + L+IE+ YA Y
Sbjct: 489 NLAGYYDLRLNQDGVRRSAYDLLSYPDINLDRLIAIWPELASIDPVTRKALEIEAQYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ EE+ LIP   D+ ++  LSNELK+KL   KP  + +A +++G+ PAA
Sbjct: 549 MERQQSDIAVMEREERLLIPSGLDFDAISGLSNELKQKLKQRKPETIAEAQRVDGIPPAA 608

Query: 606 LNLLLIYIKK 615
           + LL+  I+K
Sbjct: 609 VALLIAQIRK 618


>gi|325109911|ref|YP_004270979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Planctomyces brasiliensis DSM 5305]
 gi|324970179|gb|ADY60957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Planctomyces brasiliensis DSM 5305]
          Length = 613

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/622 (47%), Positives = 394/622 (63%), Gaps = 18/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  +A+LGA TAL+T    T+G MSCNPAIGG+ KG +VREIDAL
Sbjct: 8   YDVIVIGAGHAGTEAALASARLGAKTALLTMNCDTVGQMSCNPAIGGVAKGQIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D  GIQFR+LN  KGPA+  PR QAD++ Y+ +M+  + +QENL + Q    
Sbjct: 68  GGEMGLVIDETGIQFRMLNRSKGPAMHSPRAQADKKAYQFSMKERVEAQENLSLRQEMAE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +E   I+ + ++ N++     VVLTTGTFL+ V+H G+ K   GR G+  + +L +S
Sbjct: 128 SLLSENGKITGVRVRGNAVYCAKAVVLTTGTFLQAVMHTGEAKTAGGRAGEGTTGTLSDS 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F F+  R KTGTPAR++G+TI + + E Q  D+   PFSF+TDKI+  Q++C IT T
Sbjct: 188 LREFGFELARFKTGTPARINGRTIDFTQVEPQPGDDEPQPFSFLTDKISQPQMDCYITDT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF  +N HQIFLEPEG NT   
Sbjct: 248 NESVHDVIRANLHRAPMYSGQINSQGPRYCPSIEDKVVRFASKNSHQIFLEPEGRNTYEY 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q Q IR+I GLE   ++R GYA+EYD+  P +L PTLETK++ GLF 
Sbjct: 308 YCNGISTSLPRDVQDQMIRSIRGLENAEVMRYGYAVEYDFAPPTQLTPTLETKRVEGLFF 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGL+AGIN+ARK+         R  +Y+GV+IDDL +KGV EPYR
Sbjct: 368 AGQINGTTGYEEAAGQGLIAGINAARKTAGQGEFVLERNQAYLGVLIDDLVTKGVDEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLTP+  +LG     R K F    ++ +  +  +++     
Sbjct: 428 MFTSRAEYRLLLRQDNADRRLTPLARELGLASRERLKSFEALSEQIDRAQQYVQTKRY-- 485

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQIESSYA 543
                         +  T  E+L  P+ + + L  + P+    + S     +++I+  Y+
Sbjct: 486 --------------QRNTLEEWLRRPEMTWEKLLEMVPELAELELSPRAARQVEIDGQYS 531

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E           IP  FDYS+LP L NE K+KLS ++P  L QA +I G+TP
Sbjct: 532 GYLKRQDKEIARHAKIHSIRIPAGFDYSALPQLRNEAKDKLSRVQPVTLGQAERISGITP 591

Query: 604 AALNLLLIYIKKNTVKLNEIVL 625
           A L +L++Y+ +      E  +
Sbjct: 592 ADLTVLMMYLDRPRRAGKEEAV 613


>gi|161508217|ref|YP_001578188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus helveticus DPC 4571]
 gi|205831539|sp|A8YTQ6|MNMG_LACH4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160349206|gb|ABX27880.1| Glucose inhibited division protein [Lactobacillus helveticus DPC
           4571]
          Length = 661

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/620 (42%), Positives = 361/620 (58%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDQLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I
Sbjct: 307 TTKEVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHE 486

Query: 481 LVLT-SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +  S ++     SI  +       A  FL  P+  I ++  +  +       V E+++
Sbjct: 487 ITVHLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|323467507|gb|ADX71194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Lactobacillus helveticus H10]
          Length = 661

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 359/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDQLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I
Sbjct: 307 TTREVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKERLHE 486

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+  I ++  +  +       V E+++
Sbjct: 487 ITVHLNDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|323144403|ref|ZP_08079011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Succinatimonas hippei YIT 12066]
 gi|322415856|gb|EFY06582.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Succinatimonas hippei YIT 12066]
          Length = 633

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/618 (47%), Positives = 385/618 (62%), Gaps = 5/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R +DVIV+G GHAG EAA  +A++G  T L+TH   TIG MSCNPA GG+GKGHL+REI
Sbjct: 9   QRIFDVIVVGAGHAGIEAAGASARMGCKTLLLTHNIETIGEMSCNPAFGGIGKGHLLREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+  +  D AGIQFR LN  KGPAVR  R Q DR LY+  +++ +    NL + Q 
Sbjct: 69  DAMGGICPKAIDRAGIQFRTLNSSKGPAVRATRAQTDRHLYKEVIRKTLTDYPNLTIFQQ 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  +   +S +        R + VV+ +GTFL G+IHIG      GR GD  S  L
Sbjct: 129 PCTKLIFDGETLSGVDTAAGIQFRANAVVICSGTFLNGLIHIGLNHYQGGRAGDPASIGL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECG 241
             +  +     GRLKTGTPAR+   +I + K +KQ  +     FSFM +   +  Q+ C 
Sbjct: 189 AENLKELGLKVGRLKTGTPARIVSSSIDYSKMQKQDPEYPQPVFSFMDEADVHPTQVPCY 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  TH II   +  S +YSG I S GPRYCPSIEDK+VR+  R  HQIF+EPEGL 
Sbjct: 249 ITRTNEVTHEIIRSGLDRSPLYSGVIHSVGPRYCPSIEDKVVRYPNRTSHQIFIEPEGLT 308

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           + +VYPNGIST+LP +IQ +FI +I GLE   I RPGYAIEYD+ +P+EL  ++++KKI 
Sbjct: 309 SPLVYPNGISTSLPYDIQEKFIHSIEGLENAVIARPGYAIEYDFYDPRELSVSMQSKKIK 368

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGL+AGIN+A           SR  +YIGVM+DDL + G  
Sbjct: 369 GLFLAGQINGTTGYEEAAAQGLLAGINAALFIKGKKPWFPSRNQAYIGVMMDDLCTLGTK 428

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP+   LG I   R   F K + E    ++ LKS 
Sbjct: 429 EPYRMFTSRAEYRLMLREDNADLRLTPVAYDLGLIDGERYSAFEKKVNEIEKEKTRLKST 488

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS-SLVIERLQ 537
           ++   +  +  +S        K +   E L  P+ ++ NL   C      S     E+++
Sbjct: 489 LIKPSSEEAKELSKVLKTPLSKEQKLEEILRRPEANLDNLLKACKLDPIVSTEQAREQVE 548

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y   +M E K+ +  EK L+P +FDY ++ ALSNE+ +KL+  KP  L  AS+
Sbjct: 549 IQIRYQGYLEHEMEEIKKREQNEKTLLPLNFDYKNISALSNEVAQKLNEYKPETLGMASR 608

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAA+++L++++KK
Sbjct: 609 ISGVTPAAISILMVHLKK 626


>gi|293374959|ref|ZP_06621255.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325844315|ref|ZP_08168091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sp. HGF1]
 gi|292646436|gb|EFF64450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325489182|gb|EGC91564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sp. HGF1]
          Length = 625

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 376/621 (60%), Gaps = 6/621 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++G  T ++T   + IG M CNPAIGG  KG +VREIDAL
Sbjct: 3   YDVIVVGGGHAGIEAALAPARMGCQTLMVTGDINRIGHMPCNPAIGGPAKGIVVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   MQ+ +LSQENLDV +  V 
Sbjct: 63  GGEMGANTDKTHIQMRMLNTGKGPAVRALRAQADKVDYPKEMQKTVLSQENLDVKEAIVD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  I ++    I   TV+LTTGT++   + I      +G  G   S  L  S
Sbjct: 123 NLIVEDGTVKGITLESGEQIFGKTVILTTGTYMHSKVMISDEITLSGPDGAKTSLGLSQS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGIT 243
                F+  RLKTGTP R+   ++ + KTE Q  D+ +  FSF T +      Q+ C +T
Sbjct: 183 LKDLGFELFRLKTGTPPRVATDSVDFSKTEIQPGDDVVRAFSFDTKEHLPLEDQVPCYLT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+ +TH+IIM+N+  S++YSG ++  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D
Sbjct: 243 YTSGDTHQIIMDNLTRSSMYSGVVEGVGPRYCPSIEDKVVRFNDKPRHQIFLEPESKHID 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LP ++Q + IRTI GLE   I+R  YAIEYD I P +L+P+LETK +  L
Sbjct: 303 EIYVQGFSSSLPRDVQEKMIRTIAGLENCRIVRYAYAIEYDAIKPVQLWPSLETKLVKNL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG LEP
Sbjct: 363 YSAGQINGTSGYEEAAGQGIMAGINAALRVQGKDPLILKRSEAYIGVLIDDLVTKGTLEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNAD RL   G ++G I E +   F     +    +  L  + +
Sbjct: 423 YRLLTSRAEYRLLLRHDNADLRLREYGHQVGLINEEKYAAFLDKKAQIEAEKERLSQIKI 482

Query: 484 TSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           T K   N    SI         TA E L  P+ + Q++ S+  +     S  VIE+++I+
Sbjct: 483 TPKGNTNEYLESIPSSPLKDGITALELLKRPEITYQHIHSLIEEKNESISEEVIEQVEIQ 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + + + +++   E++ IP   DY  +P L+ E K+KL  ++P  + QA++I 
Sbjct: 543 VKYEGYINKALQQVEKLHKVEEKKIPDYIDYDDVPNLAIEAKQKLKDIRPLTIGQATRIS 602

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G+ PA +++L++Y++    K 
Sbjct: 603 GVNPADISILMVYLESGKFKK 623


>gi|302388591|ref|YP_003824413.1| glucose inhibited division protein A [Clostridium saccharolyticum
           WM1]
 gi|302199219|gb|ADL06790.1| glucose inhibited division protein A [Clostridium saccharolyticum
           WM1]
          Length = 633

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/625 (40%), Positives = 370/625 (59%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+++G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEEFYDVVIVGAGHAGCEAALACARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y  AM+  + + ++L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKQEYSRAMRMTLENTDHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   ++ +     ++  C   VL TGT+L+     G +    G  G   +N 
Sbjct: 124 AEVSEIIVEDGTLTGVKTISGAVYHCKAAVLATGTYLKARCIYGDVSEYTGPNGLKAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S  +   +  R KTGTPAR+D ++I + + E+QF DE+++PFSF TD+  +   Q+ 
Sbjct: 184 LTDSLKEHGIEMLRFKTGTPARVDKRSIDFSRMEEQFGDEKVVPFSFSTDRKALQKDQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH+II ENI  S +YSG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNENTHQIIRENIDRSPLYSGAIEGTGPRYCPSIEDKVVKFSDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q+   RT+PGLE V I+R  YAIEYD IN ++L  TLE   
Sbjct: 304 LFTNEMYLAGMSSSLPEDVQYAMYRTVPGLENVRIVRNAYAIEYDCINSRQLKSTLELMS 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+A K    + +   R+ +YIGV+IDDL +K 
Sbjct: 364 IRGLFCGGQFNGSSGYEEAAVQGFMAGVNAAMKLLGREQVVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG  +G I   + ++  +  +        L+
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLMKIGHDIGLISHEQYEKLLEKERLIEEEIRRLE 483

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  + +       +            T  E +  P+     L +I          VIE++
Sbjct: 484 STNIGASREVQAFLEENGSTPLKTGTTLAELVRRPELDYIMLTNIDNQRPLLPEDVIEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ  +  + K  E + +  +FDYSS+  L  E  +KL++ KP ++ QAS
Sbjct: 544 NINIKYDGYIRRQKQQVIQYKKLENKRLDVEFDYSSVKGLRREAIQKLNLYKPMSIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G++PA +++LL+++++   + +
Sbjct: 604 RISGVSPADISVLLVFLEQLRYQKS 628


>gi|28209870|ref|NP_780814.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium tetani E88]
 gi|73919634|sp|Q899S1|MNMG_CLOTE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28202305|gb|AAO34751.1| glucose inhibited division protein A [Clostridium tetani E88]
          Length = 623

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/615 (43%), Positives = 377/615 (61%), Gaps = 3/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAGCEAA  AA++G    + T    ++  M CNP IGG  KGHLVREIDA
Sbjct: 7   DYDVVVVGAGHAGCEAALAAARIGCKVLICTISLDSVALMPCNPNIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAV   R QAD+  Y   M+  + ++EN+ + Q EV
Sbjct: 67  LGGEMGVNIDNTFIQSRMLNTSKGPAVHSLRAQADKSRYSNRMKYILENEENVTLKQIEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + E   +  I+ ++ +     TVVL TGT+L   I IG++    G  G  P+  L  
Sbjct: 127 ISIDIENGKVKGILTKNGAYYNAKTVVLATGTYLNARIIIGEVAYSGGPNGLFPAKELTK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           + M       R KTGTPAR++ KTI + K  +Q  DE+++PFSF+TDK+   Q+ C +T 
Sbjct: 187 NLMDLGISIRRFKTGTPARVNKKTIDFSKMIEQPGDEKIVPFSFLTDKLEREQVSCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH +I +N+  S +++G I+  G RYCPSIEDK+ RF ++N HQ+F+EPEG  T+ 
Sbjct: 247 TNENTHEVIRKNLHRSPMFNGSIEGVGARYCPSIEDKVNRFPDKNKHQVFIEPEGEYTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y +G+S++LPEEIQ    RT+PGLE V  +R  YAIEYD I+P+EL  +LE+K I GLF
Sbjct: 307 MYVSGLSSSLPEEIQVAMYRTVPGLENVEFLRTAYAIEYDCIDPQELKLSLESKNIEGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQING++GYEEAAAQGL+AGIN+A K  + D +  +R+D YIGV+IDDL +KG  EPY
Sbjct: 367 SGGQINGSSGYEEAAAQGLIAGINAAMKVKEKDPLLLTRSDGYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR  NAD RLT  G  +G + E R KR+    +        +K++ +T
Sbjct: 427 RMMTSRSEYRLLLRQGNADLRLTQKGYDVGLVSEERYKRYINRRESIKSEIERIKNVQIT 486

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +K   +    S++  +  K  + YE +  P+     +  +          V E +   + 
Sbjct: 487 NKKEVNEFLLSLNSSELKKPISLYELIKRPELDYYKVEQLDKGRINLPEDVQEEVNTTAK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ +  + K  E +L+P D DYS +  L  E  +KLS ++P N+ QAS+I G+
Sbjct: 547 YEGYIEKQLEQVNQFKKFENKLLPNDIDYSKVYGLRIESVQKLSKIRPMNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKN 616
           +PA +++LLIY++  
Sbjct: 607 SPADISVLLIYLEHK 621


>gi|302672307|ref|YP_003832267.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio proteoclasticus B316]
 gi|302396780|gb|ADL35685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Butyrivibrio proteoclasticus B316]
          Length = 642

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/631 (43%), Positives = 370/631 (58%), Gaps = 18/631 (2%)

Query: 1   MIN--RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M++    YDV VIG GHAGCEAA   A+LG  T + T     I  M CNP IGG  KGHL
Sbjct: 1   MMDIREKYDVAVIGAGHAGCEAALACARLGLETIIFTMSADNIAFMPCNPHIGGSSKGHL 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           VREIDAL G MG+V D   +Q ++LN  KGPAV   R QAD+  Y   M+R + +QE+L 
Sbjct: 61  VREIDALGGQMGKVIDKTFLQSKMLNTSKGPAVHSLRCQADKMEYSKEMKRVLEAQEHLS 120

Query: 119 VIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           + Q EV+    E              I  + +    +     V+L TGT+L+     G+ 
Sbjct: 121 IKQAEVSEILMEDYQVDNEEAEYTKKIVGVKIFSGIVYDVKAVILCTGTYLKSRCLTGEA 180

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +G  G  PSN L  S +    +  R KTGTPAR+DG TI + K  +QF D  ++PFS
Sbjct: 181 ITYSGPNGLLPSNLLSQSLIDAGIELRRFKTGTPARMDGNTIDYSKMSEQFGDSPVVPFS 240

Query: 228 FMTDK--ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           F TD   +   Q+ C +T TN +TH II  NI  S IY+G I+  GPRYCPSIEDK+V+F
Sbjct: 241 FDTDPDEVQRPQVSCWLTYTNEKTHEIIRNNIDRSPIYAGIIEGIGPRYCPSIEDKVVKF 300

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +   HQ+F+EPEG  T+ VY +G+S++LPE++Q    RT+PGLE   I++  YAIEYD 
Sbjct: 301 PDHERHQVFVEPEGTYTNEVYIDGMSSSLPEDVQIAMYRTVPGLENCKIVKSAYAIEYDC 360

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P +L P+LE K I GLF AGQ NG++GYEEAAAQGL AGIN+A +      +   R++
Sbjct: 361 LCPGQLMPSLEIKNIHGLFSAGQFNGSSGYEEAAAQGLYAGINAAMQIKNKPYLTIDRSE 420

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            YIGV++DDL +K  LEPYRM TSRAEYR+ LR DNAD RL   G ++G I E +  R  
Sbjct: 421 GYIGVLVDDLVTKENLEPYRMMTSRAEYRLLLRQDNADIRLRKKGYEVGLISEDKYNRLT 480

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFSIC 522
             I +       LK+  + +       +        +TA    E +  P+FS + L  I 
Sbjct: 481 DKIDKIAKEVERLKNTTVGANATIQKFMEDNGSSPLKTATSLAELICRPEFSYETLAPID 540

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            +    S  VIE+++I   Y  Y  RQ  + ++ K  EK+LIP D DYS + +L  E ++
Sbjct: 541 KERPVLSKEVIEQVEITIRYEGYINRQERQVEQFKKLEKKLIPADIDYSDVSSLRLEARQ 600

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           KL   +P N+ QAS+I G+ PA +++LLIY+
Sbjct: 601 KLEKFRPTNIGQASRIGGVNPADVSVLLIYL 631


>gi|315221593|ref|ZP_07863513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus anginosus F0211]
 gi|315189427|gb|EFU23122.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus anginosus F0211]
          Length = 638

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/627 (41%), Positives = 375/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIVVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ +  QENL + Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVQHQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       VV+TTGT LRG I IG LK  +G      + +
Sbjct: 125 TIIDEILVENGKVVGVKTATHQEFAAQAVVVTTGTALRGEIIIGDLKYSSGPNHSLAAIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +++T+ Q  DE+   FS+    +     QI 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYEETDIQPGDEKANHFSYTSHDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGRSHEIIQNNLYRAPMFSGMVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYIQGLSTSLPEDVQKDLVHSIKGLENAELMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGINSA K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINSALKVQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +Y      L 
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGRRVGLVDDERWLRFEIKKNQYETEMKRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIER 535
           ++ L      N     + FK      TA EFL  P+ S +++ + I P A      +IE 
Sbjct: 485 TIKLKPIKETNEMVEKLGFKPLTDAVTAKEFLRRPEVSYEDVINFIGPAAEVLDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEVKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|42519902|ref|NP_965832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus johnsonii NCC 533]
 gi|81170550|sp|Q74H95|MNMG_LACJO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|41584192|gb|AAS09798.1| glucose inhibited division protein A [Lactobacillus johnsonii NCC
           533]
 gi|329668159|gb|AEB94107.1| glucose inhibited division protein A [Lactobacillus johnsonii DPC
           6026]
          Length = 632

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  +A++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 6   SNEYDVIVVGAGHAGVEAALASARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 66  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 126 VADELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C
Sbjct: 186 PENLEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 HTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +     +K 
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKK 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +  +       V E+++
Sbjct: 486 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVERLSGETLATDRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAILTAYIQQGRI 626


>gi|76798866|ref|ZP_00781075.1| glucose-inhibited division protein A [Streptococcus agalactiae
           18RS21]
 gi|76585789|gb|EAO62338.1| glucose-inhibited division protein A [Streptococcus agalactiae
           18RS21]
          Length = 633

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/627 (42%), Positives = 369/627 (58%), Gaps = 7/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YD+IV+G GH+G EA+  A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDIIVVGAGHSGVEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D   IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N      +VV+TTGT LRG I +G LK  +G      S +
Sbjct: 125 AMIDEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNTLSHDIINQNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK 
Sbjct: 305 RYTEEVYVQGLSTSLPEDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKV 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NGT+GYEEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 IAGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R   F K   ++      L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLD 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P  +                S VIE 
Sbjct: 485 SIKLKPVSETNKRIQELGFKPLTDALTAKEFMRRPQITYAVATDFVGCADEPLDSKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IP   D+  + +++ E ++K   + P  L QA
Sbjct: 545 LETEIKYEGYIKKALDQVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVKLN 621
           S+I G+ PA +++L++Y++ +   + N
Sbjct: 605 SRISGVNPADISILMVYLEGRQKGRKN 631


>gi|75674296|ref|YP_316717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrobacter winogradskyi Nb-255]
 gi|123614358|sp|Q3SWH6|MNMG_NITWN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|74419166|gb|ABA03365.1| Glucose-inhibited division protein A subfamily [Nitrobacter
           winogradskyi Nb-255]
          Length = 623

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/621 (52%), Positives = 431/621 (69%), Gaps = 1/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIVIGGGHAGCEAAA +A+ GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTASFDVIVIGGGHAGCEAAAASARTGARTALVTHRFATIGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLM R+ADA GIQFR+LN +KGPAVRGPR Q DR+LY  AMQ  I    NL+VI 
Sbjct: 61  VDALDGLMARIADAGGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQAAIRETANLEVID 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE          I+ + + D   I+ + VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADDLIVSGGRIAGVRLTDGRRIKSAAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS +T +IT  QI+CG
Sbjct: 181 LSASFERIGFALGRLKTGTPPRLDGTTIDWAAVEMQPGDDPPEPFSVLTARITTPQIQCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S IYSG I S GPRYCPSIEDK+VRFG+R+GHQ+FLEPEGL+
Sbjct: 241 ITRTTPATHDLIRTNVHRSPIYSGQITSSGPRYCPSIEDKVVRFGDRDGHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE V + RPGYAIEYD+++P+EL PTL+T+++ 
Sbjct: 301 DATVYPNGISTSLPEEVQLAILATIPGLENVKMTRPGYAIEYDHVDPRELEPTLQTRRMR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D + F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDPVVFDRADGYLGVMIDDLVTRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      +    SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDRGIALGCVGAGRAAYHRAKMAALQAAKQGAMSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG  R+A+E LSYP+   + + +I P+       + E L+I++ 
Sbjct: 481 SVTPNEAARHGLSLNRDGHRRSAFELLSYPEIGWREVAAIWPELSAIDPAIAEHLEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  ++  + DYS++P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YDVYLKRQAADVEAFRRDEGLVL-TEIDYSAVPGLSNEARNRLEKAQPLTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           TPAAL +L  Y+++   +   
Sbjct: 600 TPAALGILAAYLRREARQRTA 620


>gi|295697831|ref|YP_003591069.1| glucose inhibited division protein A [Bacillus tusciae DSM 2912]
 gi|295413433|gb|ADG07925.1| glucose inhibited division protein A [Bacillus tusciae DSM 2912]
          Length = 628

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/620 (42%), Positives = 367/620 (59%), Gaps = 2/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAG EAA  AA+LG  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   EYDVVVVGAGHAGSEAALAAARLGCRTLLLTINVDAVAYMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R AD + IQ R+LN  KGPAVR  R QAD+ LY   M+  +     L + QG V
Sbjct: 67  LGGEMARNADRSHIQMRMLNTGKGPAVRALRAQADKVLYGRRMKEVLEYTPGLTLRQGLV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                       +     +      VVLTTGT+LRG + IG +   +G  G  P+ +L +
Sbjct: 127 EEILVRGGRAVGVRTNTGAEYLAQAVVLTTGTYLRGRVIIGDVSYSSGPAGQMPALALSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F   R KTGTP R++ ++I + K   Q  D++ + FS         Q+ C +T 
Sbjct: 187 NLTDLGFQLVRFKTGTPPRVNRRSIDFTKLMVQPGDDQWLHFSHEERLPRRPQVPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM+N+  + +YSG+IK  GPRYCPSIEDK+VRF +R  HQ+FLEPEGL T  
Sbjct: 247 TNERTHAIIMDNLDRAPMYSGEIKGRGPRYCPSIEDKVVRFSDRPAHQVFLEPEGLFTAE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE+IQ + + TI GLE   I+RPGYAIEYD + P +L+PTLETK + GLF
Sbjct: 307 WYVQGMSTSLPEDIQVEMLHTIRGLENAEILRPGYAIEYDALVPTQLWPTLETKAVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A K    + +  SR + YIGVMIDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIIAGINAALKVLGREPLVLSRAEGYIGVMIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL   G +LG + ER  +R  K  +        L    + 
Sbjct: 427 RLLTSRAEHRLLLRHDNADLRLMEKGYRLGLVPEREYERLLKKRERIEEELDRLSGTRVR 486

Query: 485 SKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            +++ S            +    + L  P+     + ++ P        V+E+++I   Y
Sbjct: 487 GEDVESLLRERGSAPVSGSVALDQLLRRPELDYSLVQAVAPPREALDPEVVEQVEIAVKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  ++    + ++  E++ IP+  DY  +  LS+E +EKLS+++P ++ QAS+I G++
Sbjct: 547 AGYMAKEQQTIEHMRKMEEKRIPEGLDYGKVRGLSHEGREKLSLVQPRSVGQASRISGVS 606

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA + +LL+Y++     L +
Sbjct: 607 PADIAILLVYLEGQNRVLGK 626


>gi|71891794|ref|YP_277523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123641256|sp|Q494F8|MNMG_BLOPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71795900|gb|AAZ40651.1| glucose-inhibited division protein A [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 632

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/621 (46%), Positives = 388/621 (62%), Gaps = 7/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+GGGHAG EAA  +A++  +T LITH   T+G MSCNPA+GG+GKGHLV+EIDA
Sbjct: 6   HFDVIVVGGGHAGTEAALASARMQCNTLLITHNIDTLGQMSCNPAVGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G M    D +GIQFRVLN  KG AVR  R QAD+ LYR A++  +  Q+ L VIQ  V
Sbjct: 66  MGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQADKILYRQAIRSILEYQKFLLVIQASV 125

Query: 125 AGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  N I  ++  +       ++VVLTTGTFL G IHIG      GR GDS S+SL 
Sbjct: 126 EDLIVSGNKIVGVITPKLGMKFSGTSVVLTTGTFLNGKIHIGMNNFRGGRSGDSESSSLL 185

Query: 184 N-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
           +    +  F   RLKTGT  R+  K I +     Q++D+ +  FSF+ + K+   Q+ C 
Sbjct: 186 SERLKELSFQISRLKTGTSPRVHTKGINFGSLRAQYSDDPIPVFSFIGSTKLHPTQVPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH I+  N+  S +Y+G IK   PRYCPSIEDKI RF +RN HQIFLEPEGL 
Sbjct: 246 ITHTNNKTHEIVRSNLYQSPMYTGLIKGIAPRYCPSIEDKITRFSDRNAHQIFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NGIST+LP  +Q Q I++I GLE   IIRPGYAIEYD+ +P++L  TLE+K IS
Sbjct: 306 TPEVYLNGISTSLPFCVQMQMIKSIQGLENACIIRPGYAIEYDFFDPRDLKLTLESKIIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF +GQINGTTGYEEAAAQGL+AGIN+AR S   +     R  +Y+GV++DDL + G  
Sbjct: 366 GLFFSGQINGTTGYEEAAAQGLLAGINAARFSKNKEGWYPRRDQAYLGVLVDDLCTHGTE 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I E R K F    +     R  L++ 
Sbjct: 426 EPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLIDESRWKAFCCKKENIEKERQRLRNT 485

Query: 482 VLTS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQ 537
            +     +++  +   K          + L  P+ + + L  +   +       V E+++
Sbjct: 486 YIFPYSSDVAQLNNFLKTPLTHETNGEDLLRRPEINYKKLSQLSTFSPSILDRQVFEQIE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y   Q  E K   + E  L+P D D++ +  LS E+ +KL+  KP+++ QAS+
Sbjct: 546 IQIKYEGYIRHQQEEIKRHIYNENTLLPTDIDFNIVSGLSQEVIDKLNNYKPYSIGQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TPAA++ LL+++KK  +
Sbjct: 606 ISGITPAAISNLLVWLKKQGL 626


>gi|312897435|ref|ZP_07756859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera micronuciformis F0359]
 gi|310621496|gb|EFQ05032.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera micronuciformis F0359]
          Length = 639

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/618 (44%), Positives = 383/618 (61%), Gaps = 3/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++   T LIT     I  M CNPAIGG GK HLV+EIDA
Sbjct: 15  TYDVIVVGAGHAGCEAALAAARMKMHTLLITLNLDNIALMPCNPAIGGPGKSHLVKEIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG VAD   IQ R+LN  KGPAV   R Q+D++ Y+  M   + ++ NLDV Q  V
Sbjct: 75  LGGQMGLVADNTAIQMRMLNTGKGPAVYSLRAQSDKKAYQSEMTHILENEANLDVKQLTV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I+  +  +         V+L TGT+L+G I IG   + +G +G   + +L +
Sbjct: 135 TDLIVEDKIVKGVYTELGETFLAKAVILATGTYLKGRIIIGTTVLESGPIGQRSAEALSD 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K+     R KTGTPAR+D +T+  D  EKQ  D     FSF+++++   ++ C +T 
Sbjct: 195 SLKKYGISLMRFKTGTPARIDSRTLRTDSMEKQEGDNEGHAFSFLSERLNRNKVCCWLTY 254

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  + + +G I+  GPRYCPSIE KI+RF ++  HQ+F+EPEGL T+ 
Sbjct: 255 TNERTHEIIRSNLDRAPMCNGVIEGIGPRYCPSIESKILRFADKKRHQLFVEPEGLKTEE 314

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q++F++TIPGLE V I+RPGYAIEYD ++P +L PTLE KKI GL+
Sbjct: 315 MYVQGMSTSLPMDVQYEFLKTIPGLEDVKIMRPGYAIEYDCLDPLQLLPTLEVKKIRGLY 374

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K  K D    +R ++YIGV+IDDL +KG  EPY
Sbjct: 375 SAGQANGTSGYEEAAAQGLIAGINAALKIQKKDPFVLTRAEAYIGVLIDDLVTKGTNEPY 434

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G +LG + + R   F K  +E + L S+LK L +T
Sbjct: 435 RMMTSRSEYRLILRQDNADMRLTEKGRELGLVTDERYAAFCKKKEEVDELLSVLKKLSVT 494

Query: 485 S---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                N    S+            + L   + +   +  +  + + +   V E ++I   
Sbjct: 495 PTTRTNELLESVGSAPLKTGIKGVDLLRRQEMTYSLMKKLFSELKDYPLDVTEEVEITVK 554

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +  ++   E+RL+P   DY ++  +S+E ++KLS ++P +L QAS+I G+
Sbjct: 555 YEGYIERQREQVAKMNKLEQRLLPDSIDYEAIDTISSEGRQKLSDIRPRSLGQASRISGV 614

Query: 602 TPAALNLLLIYIKKNTVK 619
           +PA +  LLIY ++   +
Sbjct: 615 SPADITALLIYTEQMRRE 632


>gi|260101883|ref|ZP_05752120.1| glucose-inhibited division protein A [Lactobacillus helveticus DSM
           20075]
 gi|260084311|gb|EEW68431.1| glucose-inhibited division protein A [Lactobacillus helveticus DSM
           20075]
          Length = 661

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/620 (42%), Positives = 361/620 (58%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLVTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDQLVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FS+ +  +     QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSYESKDVDYLKNQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNNGTHEIIRENLNRAPMFSGIIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEEIQ + + ++ GLE   ++RPGYAIEYD + P +L  TLETK I
Sbjct: 307 TTKEVYVGDFSTSMPEEIQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNI 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQDKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R ++F +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRHDNADLRLTEYGHELGLISDERYEKFEEKKQAIRDAKEKLHE 486

Query: 481 LVLT-SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +  S ++     SI  +       A  FL  P+  I ++  +  +       V E+++
Sbjct: 487 ITVHLSDDVQEFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY  +  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEMIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|285017165|ref|YP_003374876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gida
           protein [Xanthomonas albilineans GPE PC73]
 gi|283472383|emb|CBA14888.1| probable trna uridine 5-carboxymethylaminomethyl modification
           enzyme gida protein [Xanthomonas albilineans]
          Length = 630

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/618 (46%), Positives = 380/618 (61%), Gaps = 5/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 9   YDVIVIGGGHAGTEAALASARAGAGTLLLTHNMETVGAMSCNPAIGGIGKGHLVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 69  GGAMAQAADLAGIQWRTLNASKGPAVRATRCQADRSLYRNAIRRLVEAQPNLTVFQAAVD 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   +  ++ Q         VVLT GTFL G IHIG+ +   GR GD P+ +L  +
Sbjct: 129 DLVMDGERVRGVLTQTGLRFEAGAVVLTAGTFLAGKIHIGQTQYAGGRAGDPPATALAQA 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
                F   RLKTGTP R+DG+++ +   E+Q  D  L   SF+ D   + RQ+ C IT 
Sbjct: 189 LRDGRFGVDRLKTGTPPRIDGRSLDYTAMEEQPGDAPLPVMSFLGDVAQHPRQVSCWITH 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +Y+G I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL+   
Sbjct: 249 TTERTHAIIRGALDRSPLYTGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLDVVE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK + GLF
Sbjct: 309 IYPNGISTSLPFDVQLELVRSIRGFERAHITRPGYAIEYDFFDPRGLKASLETKAMPGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR+   L+     R  +YIGV+IDDL + G  EPY
Sbjct: 369 FAGQINGTTGYEEAAAQGLIAGLNAARQVQGLEPWSPRRDQAYIGVLIDDLITHGTSEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + E R  RF             L+    T
Sbjct: 429 RMFTSRAEYRLQLREDNADARLTGIGRELGLVDEARWARFQTKQDAVARENERLRGFWAT 488

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
             N       +       +     + +  P+     L  +         + V E+++I  
Sbjct: 489 PSNALGREVAATLGVAVSRETNVLDLIKRPELDYAALMRVPLLGPGVADTQVAEQVEIGI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   IP  FDY+ +  LS E+++KL  ++P  + QA +I G
Sbjct: 549 KYAGYLERQREEIARQQRHEDTTIPTAFDYAQVRGLSAEVQQKLQRVRPQTVGQAQRIPG 608

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAA++LLL+++++   
Sbjct: 609 MTPAAISLLLVHLERARR 626


>gi|329891180|ref|ZP_08269523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas diminuta ATCC 11568]
 gi|328846481|gb|EGF96045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas diminuta ATCC 11568]
          Length = 637

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/624 (52%), Positives = 427/624 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++DV+VIGGGHAGCEAA  AA+ G  T L+T K  TIG MSCNPAIGGLGKGHLVREI
Sbjct: 12  DHTFDVVVIGGGHAGCEAATAAARAGVRTLLLTQKLETIGEMSCNPAIGGLGKGHLVREI 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G
Sbjct: 72  DALDGVMGRLADVSGIQFRMLNRSKGAAVRGPRSQIDRRLYREAMQAELADYPNLTLMAG 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
              G     + +  +       IR   VVLTTGTFL GVIH G L+IPAGR G+ PS  L
Sbjct: 132 TAEGLILNGDRVVGVTTGAGETIRAGAVVLTTGTFLNGVIHRGDLRIPAGRFGEDPSTGL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                  D   GRLKTGTPARLDG+TI WD+ E Q AD++  PFSF+TD+I   QI CG+
Sbjct: 192 AGDLHDADLMMGRLKTGTPARLDGRTIAWDRLEMQAADDQPAPFSFLTDRIEVPQIACGV 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETHRII EN+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+ 
Sbjct: 252 THTTEETHRIIAENLGESAVYGGRLSGRGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDD 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST++ +  Q  F+ T+PGLEKV + R GYAIEYDY++P+EL P LE KK  G
Sbjct: 312 PSVYPNGISTSVSDATQLAFLHTMPGLEKVEVFRFGYAIEYDYVDPRELTPALEVKKRPG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEA AQGL+AG+N+AR +   D +   R  +YIGVMIDDL ++GV E
Sbjct: 372 LYLAGQINGTTGYEEAGAQGLIAGLNAARAAAGSDPLILGRDQAYIGVMIDDLVTRGVTE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR++LR DNAD RLTP+G++ G +   R K +       +    + +   
Sbjct: 432 PYRMFTSRAEYRLTLRADNADQRLTPLGIEAGIVSADRAKVWLDKADRLDRANRVSRETQ 491

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K   +  I+   DG+ R+  + L++P  S+    S+ P+   +++ V E+++I++ Y
Sbjct: 492 FTPKEAGALGITVNADGQRRSIRDLLAFPTVSLDQFVSVRPEIADWTAAVREQVEIDAVY 551

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +A+ ++ EE   +P D DY+++ ALSNE++EKL++++P  L QA +IEGMT
Sbjct: 552 AGYLDRQAQDAEALRREEGLSLPADLDYAAIGALSNEVREKLAMIRPLTLGQAGRIEGMT 611

Query: 603 PAALNLLLIYIKKNTVKLNEIVLV 626
           P AL  LL ++KK      ++  V
Sbjct: 612 PGALTALLAHVKKAKGVEADLAAV 635


>gi|186686455|ref|YP_001869651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nostoc punctiforme PCC 73102]
 gi|186468907|gb|ACC84708.1| glucose inhibited division protein A [Nostoc punctiforme PCC 73102]
          Length = 670

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/628 (42%), Positives = 375/628 (59%), Gaps = 9/628 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA  +A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 39  FQDAFDVIVVGAGHSGCEAALASARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHE 98

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+VAD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 99  VDALGGEIGKVADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQENLTIRE 158

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V        + +  +        RC  V+LTTGTFL G I +G   +PAGR G+  + 
Sbjct: 159 SMVTDLVLGANDEVIGVETYFGVGFRCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAE 218

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K   Q  DE +  FSF  +  +   Q+ 
Sbjct: 219 GLTQTLNRLGFETGRLKTGTPARVDKRSVDYSKMLIQPGDEDVRWFSFDPEAWVEREQMP 278

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ITRT  ETHR+I +N+  S +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 279 CYITRTTTETHRLIQDNLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 338

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q +RT+PGLEK  ++RP YA+EYDY+   + +PTL TKK
Sbjct: 339 RDIPELYIQGFSTGLPENLQLQMLRTLPGLEKCVMLRPAYAVEYDYLPATQCYPTLMTKK 398

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GLF AGQINGTTGYEEAAAQGLVAGIN+AR  +  + I F+R  SYIG ++DDL +K 
Sbjct: 399 VAGLFCAGQINGTTGYEEAAAQGLVAGINAARFVHSQEMIVFAREQSYIGTLVDDLCTKD 458

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLT +G ++G I +RR   F +        +  L+
Sbjct: 459 LREPYRMLTSRSEYRLLLRSDNADQRLTTLGREIGLIDDRRWDLFTQKQANIITEKQRLQ 518

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +  +  K      I+   D +     + T  + L  P F   +L          +    E
Sbjct: 519 ATRV--KEHDEMGIAIASDTQQAIKGSITLNDLLRRPGFHYVDLDRFGLGNPNLNRAEKE 576

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y  Y  RQ  +  +I  +  R +P D DY+++  LS E +EKL+ +KP  L Q
Sbjct: 577 GAEIDIKYYGYLARQQNQIDQIARQAHRQLPADLDYTTIDTLSKEAREKLTHVKPLTLGQ 636

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           A++I G+ PA +N LL+Y++   +   +
Sbjct: 637 AARIGGVNPADVNALLLYLELRKINSQQ 664


>gi|194367607|ref|YP_002030217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Stenotrophomonas maltophilia R551-3]
 gi|194350411|gb|ACF53534.1| glucose inhibited division protein A [Stenotrophomonas maltophilia
           R551-3]
          Length = 629

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/620 (45%), Positives = 383/620 (61%), Gaps = 5/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVI IGGGHAG EAA  AA+ G  T L+TH   T+G+MSCNPAIGG+GKGHLV+EID
Sbjct: 6   HRYDVIAIGGGHAGTEAALAAARTGVRTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M   AD AGIQ+R LN  KGPAVR  R QADR LYR+A++  +  + NL V Q  
Sbjct: 66  ALGGAMAHAADRAGIQWRTLNASKGPAVRATRCQADRNLYRMAIRAIVEGEANLTVFQAA 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  ++ Q         VVLT GTFL G IH+G  +  AGRMGD P+ +L 
Sbjct: 126 VDDLVIEGDAVRGVITQTGLRFDAEAVVLTAGTFLAGKIHVGPTQYAAGRMGDPPATTLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
               +  F   RLKTGTP R+DG+++ +   ++Q  D      SF+     + Q + C I
Sbjct: 186 ARLRERPFQVDRLKTGTPPRIDGRSLDYSVMDEQPGDSPRPVMSFLGSVDEHPQQVSCWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +TH+II + +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEGL  
Sbjct: 246 THTTEQTHQIIRDALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKASHQIFVEPEGLGI 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + +R+I G E  +I RPGYAIEYD+ +P+ L  +LETK ++G
Sbjct: 306 VEIYPNGISTSLPFDVQLEMVRSIRGFENAHITRPGYAIEYDFFDPRGLKASLETKLVNG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR+   LD  C  R ++Y+GV++DDL + G  E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGLNAARQVRGLDGWCPRRDEAYLGVLVDDLITHGTNE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLTP+G  +G + +RR   F       +  R+ L +L 
Sbjct: 426 PYRMFTSRAEYRLQLREDNADQRLTPVGRGMGLVDDRRWSAFETKQAAVDAERARLGALW 485

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
            T  N     ++        +     + +  P+     L  +           V E+++I
Sbjct: 486 ATPANALGREVNETLGVAVSRETNVLDLIKRPELDYAALMQVPSLGPAVADGKVAEQVEI 545

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ  E +  +  E   I + FDY+++  LS E  +KL  ++P  + QA +I
Sbjct: 546 GVKYAGYLDRQREEIERQQRHEATPIAEAFDYATVRGLSAEALQKLERVRPQTIGQAQRI 605

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            GMTPAA++LLL+++++   
Sbjct: 606 PGMTPAAISLLLVHLERARR 625


>gi|15673829|ref|NP_268004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878503|sp|Q9CEJ4|MNMG_LACLA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|12724877|gb|AAK05945.1|AE006414_11 glucose inhibited division protein GidA [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326407338|gb|ADZ64409.1| glucose inhibited division protein A [Lactococcus lactis subsp.
           lactis CV56]
          Length = 625

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 373/621 (60%), Gaps = 8/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDV+VIGGGHAG EA+  AA++G+ T L+T   + +  M CNP+IGG  KG +VRE
Sbjct: 3   FQENYDVVVIGGGHAGVEASLAAARMGSKTLLMTINLNMVAFMPCNPSIGGSAKGIVVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN  KGPAVR  R QAD++ Y  +M+  +  QENL + Q
Sbjct: 63  IDALGGEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYADSMKNTVSDQENLTLRQ 122

Query: 122 GEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G V       EK  +  I     +      V++TTGT LRG I IG+LK  +G      S
Sbjct: 123 GMVEELILDEEKKKVIGIKTSTGTKYGAKAVIITTGTALRGEIIIGELKYSSGPNNSLSS 182

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQ 237
             L ++  +  F+ GR KTGTP R+   +I +DKTE Q  DE    FSFM+  +     Q
Sbjct: 183 IGLADNLREIGFEIGRFKTGTPPRVLASSIDYDKTEIQPGDEAPNHFSFMSSDENYLKDQ 242

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T T   +H I+  N+  + ++SG +K  GPRYCPSIEDKI RF ++  HQ+FLEP
Sbjct: 243 IPCWLTYTTENSHTILRGNLHRAPLFSGIVKGVGPRYCPSIEDKITRFADKPRHQLFLEP 302

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG NT+ VY  G+ST++PE++Q   +++IPGLE   ++RPGYAIEYD + P +L PTLET
Sbjct: 303 EGRNTEEVYIGGLSTSMPEDVQFDLVKSIPGLENAQMMRPGYAIEYDVVMPHQLRPTLET 362

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +SGLF AGQ NGT+GYEEAA QGLVAGIN+A K          R+++YIGVMIDDL +
Sbjct: 363 KLVSGLFTAGQTNGTSGYEEAAGQGLVAGINAALKVQGKSEFILKRSEAYIGVMIDDLVT 422

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + + + +   + +++     
Sbjct: 423 KGTLEPYRLLTSRAEYRLILRHDNADRRLTEIGRQVGLVSDEQWEHYQAKMAQFDREMKR 482

Query: 478 LKSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVI 533
           L S  L            + F       T  EFL  P+     +      A +     VI
Sbjct: 483 LNSEKLKPLPDTQEKLGKLGFGPIKDALTGAEFLKRPEVHYNEVIDFIGQAPEKIDRTVI 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ E +Y  Y  + M +  ++   E + IPK+ D+  L +++ E ++K   + P  L 
Sbjct: 543 ELIETEITYEGYIKKAMDQVDKMHRLEAKRIPKNMDWDKLDSIATEARQKFKKINPETLG 602

Query: 594 QASKIEGMTPAALNLLLIYIK 614
           QAS+I G+ PA +++L++Y++
Sbjct: 603 QASRISGVNPADISILMVYLE 623


>gi|302035745|ref|YP_003796067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Nitrospira defluvii]
 gi|300603809|emb|CBK40141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Nitrospira defluvii]
          Length = 624

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 393/624 (62%), Gaps = 3/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DVIV+GGGHAGCEAA  AA++GA T L+T     I  MSCNPAIGG+ KGHLV+E
Sbjct: 1   MSEQCDVIVVGGGHAGCEAALAAARMGARTILLTMDPDRIAQMSCNPAIGGIAKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D AGIQFR++N  KGPAVR  R Q D+++YR  MQR + +Q  L++  
Sbjct: 61  IDALGGEMGRNTDQAGIQFRMINTSKGPAVRALRAQCDKKVYREVMQRTLRAQPALEIRG 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V    T    ++ IV      I    VVLT+GTFL+G+IHIG    PAGR G++ +  
Sbjct: 121 GTVDRILTRAGGVTGIVTDAGVSIHARAVVLTSGTFLKGLIHIGLNHFPAGRAGEASAEH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +    F F+ GRLKTGTP RLD  +I +   E Q  D+   PFS+ T +++  Q+ C 
Sbjct: 181 LSDCMRDFGFEVGRLKTGTPPRLDRDSIDFSVMEVQPGDDPPPPFSYRTRRVSLPQVPCH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II +NI  S ++SG I S GPRYCPSIEDK+VRF +++ HQIF+EPEGL+
Sbjct: 241 LTYTNSQTHDIIAKNIDRSPLFSGVIDSIGPRYCPSIEDKVVRFADKDRHQIFIEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  YPNGIST+LP ++Q   ++TIPGLE+  +++PGYA+EYDY  P++L  +LETK ++
Sbjct: 301 TNEFYPNGISTSLPVDVQAAILKTIPGLEQTRMLKPGYAVEYDYFPPRQLHNSLETKLVA 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEA AQG++AGIN+A K      +   R+ +YIGV+IDDL +K   
Sbjct: 361 GLYHAGQINGTSGYEEAGAQGIMAGINAALKLRGEAPLVLDRSQAYIGVLIDDLITKDAR 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL  +G ++G + +    +              LK  
Sbjct: 421 EPYRMFTSRAEYRLLLRHDNADLRLMDLGHRIGLVSDEMHGKLEAKRFAIEREVQRLKET 480

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
                +              G T++  E L   + S   + ++   A      + E +Q+
Sbjct: 481 RPKITSDVKRLMEEAEVGAVGPTQSLAEILRRQEMSYNKIVAVFGGADIDDPDITEAIQL 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  RQ+ + +  +  E R IP  FDY  +   S+E++EKL  +KP ++ QAS+I
Sbjct: 541 EVKYEGYIKRQLQQIQRSEKLEHRAIPDQFDYDGITGFSSEVREKLKRVKPASVGQASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+TPAA++LLL+ I+++  + + 
Sbjct: 601 SGVTPAAISLLLVAIERHRRQPSA 624


>gi|332705949|ref|ZP_08426022.1| glucose-inhibited division protein A [Lyngbya majuscula 3L]
 gi|332355209|gb|EGJ34676.1| glucose-inhibited division protein A [Lyngbya majuscula 3L]
          Length = 636

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/628 (42%), Positives = 374/628 (59%), Gaps = 5/628 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GHAGCEAA  +A+LG  T L+T     I    CNPA+G   K  L  E
Sbjct: 7   FQDAFDVIVVGAGHAGCEAALASARLGCRTILLTLNLDKIAWQPCNPAVGAPAKSQLTHE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 67  VDALGGEIGKMADRTYLQKRVLNCSRGPAVWALRAQTDKREYAAVMKEIVENQENLTLRE 126

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V        + +  +        + S V+LTTGTFL G I +G   + AGR G+  + 
Sbjct: 127 AMVTDLVLGANDQVIGVQTYFGVAFQASAVILTTGTFLGGRIWVGNKSMSAGRAGEFAAI 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ +   E Q  DE +  FSF  D  +   Q+ 
Sbjct: 187 GLTETLNRLGFETGRLKTGTPARVDKRSVDYSNLEPQPGDEEVRWFSFDPDVWVEREQMY 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I +N+  S IY G +++ GPR CPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 247 CYLTRTTSETHRLIRDNLHLSPIYGGWVEAKGPRSCPSIEDKIVRFADKESHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q Q ++T+PGLE   ++RP YA+EYDY+   + +PTL TKK
Sbjct: 307 RDIPELYIQGFSTGLPENLQLQLLQTLPGLENCAMLRPAYAVEYDYLPATQCYPTLMTKK 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+ R     + + F R +SYIG +IDDL +K 
Sbjct: 367 IEGLFCAGQINGTTGYEEAAAQGIVAGINAVRYVGHQEMVVFPREESYIGTLIDDLCTKD 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G KLG I +RR + + +        ++ L+
Sbjct: 427 LREPYRMLTSRSEYRLLLRSDNADRRMTPLGRKLGLIDDRRWQLYQQKQGNITTEKARLQ 486

Query: 480 SLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+ +   +    +I+    ++   + T  E L  P F   NL          +    E  
Sbjct: 487 SVRIKEHDPIGIAIASDTQQKIKNSITLAELLRRPGFHYVNLDQYGLGDPNLNQSEREGA 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ  +  ++  +  R +P D DY+++  LS E +EKLS +KP  + QAS
Sbjct: 547 EIDLKYDGYLKRQQKQIDQVSRQANRQLPPDLDYAAIETLSKESREKLSQVKPMTIGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           ++ G+ PA +N LL+Y++    K   +V
Sbjct: 607 RVGGVNPADINALLVYLEVRERKFTAVV 634


>gi|304313412|ref|YP_003813010.1| Glucose-inhibited division protein A [gamma proteobacterium HdN1]
 gi|301799145|emb|CBL47388.1| Glucose-inhibited division protein A [gamma proteobacterium HdN1]
          Length = 627

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/621 (46%), Positives = 393/621 (63%), Gaps = 5/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAA  AA++G  T L++H   T+G MSCNPAIGG+GK HLV+EID
Sbjct: 5   KHYDVIVIGGGHAGTEAALAAARMGCQTLLLSHNIETLGQMSCNPAIGGIGKSHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M R AD AGIQFRVLN +KGPAVR  R QADR LY+ A+++ + +Q+NLD+ Q  
Sbjct: 65  ALGGVMARAADRAGIQFRVLNSRKGPAVRATRAQADRILYKAAIRQTLENQDNLDIFQQA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                   + +  +V       R  TVVLT GTFL G IHIG      GR GD PS +L 
Sbjct: 125 ADDLIVVGDQVQGVVTHSGIRFRSHTVVLTVGTFLGGKIHIGLESHAGGRAGDPPSIALA 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
           +   +      RLKTGTP R+D +++ +   ++Q  D      SFM +     +QI C I
Sbjct: 185 HRLRELPLRVDRLKTGTPPRIDARSVDFSVMQEQPGDTPTPVMSFMGNLSDHPKQISCYI 244

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II   +  S +Y+G I+  GPRYCPSIEDKI RF ++N HQ+FLEPEGL T
Sbjct: 245 THTNESTHEIIRSGLNRSPMYTGVIEGIGPRYCPSIEDKIHRFADKNQHQVFLEPEGLTT 304

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP +IQ + + +I GLE  +I+RPGYAIEYDY +P++L P+L TK + G
Sbjct: 305 HELYPNGISTSLPFDIQLKLVHSIRGLEHAHILRPGYAIEYDYFDPRDLHPSLATKTLGG 364

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AG N+A            R  +Y+GV++DDL + G  E
Sbjct: 365 LYFAGQINGTTGYEEAAAQGLLAGANAALSVQGKAPWTPHRDQAYLGVLVDDLITMGTRE 424

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G +LG + + R   F K  +        L+ + 
Sbjct: 425 PYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDTRWSAFCKKREAIARETERLRCIR 484

Query: 483 LTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           ++ ++L +  I+   +    +  +  E L  P+    +L ++  DA +    V E+++I 
Sbjct: 485 ISPESLIAERINQHTEHAIQREYSLLELLKRPELGYADLGNLTGDAVE-DPAVAEQVEIN 543

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  RQ  E   ++  E+  +P+ FD++ +  LSNE  +KL  +KP  + QAS+I 
Sbjct: 544 AKYEGYILRQKEEISRLRASEETRLPEGFDFTKVKGLSNEATQKLVAVKPATIGQASRIP 603

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G+TPAA++LLLI++KK+  K 
Sbjct: 604 GITPAAISLLLIHLKKSDSKR 624


>gi|149912890|ref|ZP_01901424.1| glucose-inhibited division protein A [Roseobacter sp. AzwK-3b]
 gi|149813296|gb|EDM73122.1| glucose-inhibited division protein A [Roseobacter sp. AzwK-3b]
          Length = 623

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/623 (55%), Positives = 441/623 (70%), Gaps = 1/623 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M + + +DVIVIGGGHAGC+AA  AA++GA TAL+T   S IG MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKHFDVIVIGGGHAGCDAACAAARVGARTALVTLNKSGIGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REID+LDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR+LYR AM  EI +Q  L +
Sbjct: 61  REIDSLDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYREAMLSEIENQPGLSI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+GE A        ++ IV+ D S I    VVLTTGTFLRGVIHIG +  P GRMGD PS
Sbjct: 121 IEGEAADVLMNGERVTGIVLADGSEISAGAVVLTTGTFLRGVIHIGDVSRPGGRMGDKPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      F    GRLKTGTP RLDGKTI WD  EKQ  D+  + FSF++D  T RQI 
Sbjct: 181 IKLAERLDSFALKLGRLKTGTPPRLDGKTIDWDSLEKQPGDDDPVLFSFLSDAPTARQIS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPE 
Sbjct: 241 CGITHTNEQTHAIIRDNLDRSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQIFLEPES 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+ D++YPNGIST+LPE++Q  ++R+I GLE   I++PGYAIEYDY++P+ L  TL  K 
Sbjct: 301 LSDDLIYPNGISTSLPEDVQQDYVRSIAGLEHAVIVQPGYAIEYDYVDPRALDATLAVKA 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQINGTTGYEEAAAQGLVAG+N+A  + + D + FSR+DSYIGVM+DDL ++G
Sbjct: 361 VPGLYLAGQINGTTGYEEAAAQGLVAGLNAALAAQERDPLLFSRSDSYIGVMVDDLITRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+G+  G +G +R + FA+ ++  +  R+ L 
Sbjct: 421 VSEPYRMFTSRAEFRLSLRADNADQRLTPLGIATGLVGPQRSQAFAQKMERLDAARARLD 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   T ++L  T +   QDG  RTA++ L++PD    +L ++             +L+ +
Sbjct: 481 AASFTPRDLIKTGLKINQDGSRRTAFQLLAFPDIDFSHLLTLDQTLADIDEASRAQLEKD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  + + +K +E + IP D D+S++  LSNELK KL+  +P NL QAS+I+
Sbjct: 541 ALYANYIQRQNRDVEMMKRDEAQEIPSDLDFSTIDGLSNELKTKLTAARPANLAQASRID 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           GMTPAAL LL+  ++    +   
Sbjct: 601 GMTPAALTLLMSRLRLRKREKTA 623


>gi|319940178|ref|ZP_08014531.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus anginosus 1_2_62CV]
 gi|319810649|gb|EFW06979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Streptococcus anginosus 1_2_62CV]
          Length = 638

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 372/627 (59%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD++VIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTESYDIVVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D   IQ ++LN  KGPAVR  R QAD+ELY   M++ +  QENL + Q
Sbjct: 65  VDALGGEMAKNIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVQHQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       VV+TTGT LRG I IG LK  +G      + +
Sbjct: 125 TIIDEILVENGKVVGVKTATHQEFATKAVVVTTGTALRGEIIIGDLKYSSGPNHSLAAIN 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +++T+ Q  DE+   FS+    +     QI 
Sbjct: 185 LADNLRDLGFEIGRFKTGTPPRVKASSINYEETDIQPGDEKANHFSYTSHDEDYLKEQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNGRSHEIIQNNLYRAPMFSGMVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 305 RDTEEVYIQGLSTSLPEDVQKDLVHSIKGLENAELMRTGYAIEYDMIMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R  RF     +Y      L 
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGRRVGLVDDERWLRFEIRKNQYETEMKRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIER 535
           ++ L      N     + FK      TA EFL  P+ S Q++       A      +IE 
Sbjct: 485 TIKLKPIKETNEMVEKLGFKPLTDAVTAKEFLRRPEVSYQDVVKFVGSAAEDLDEKIIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP + D+  + +++ E ++K   + P  + QA
Sbjct: 545 IETEVKYEGYISKALDQVEKMKRMEEKRIPANIDWDDIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGKSRSISK 631


>gi|317054821|ref|YP_004103288.1| glucose inhibited division protein A [Ruminococcus albus 7]
 gi|315447090|gb|ADU20654.1| glucose inhibited division protein A [Ruminococcus albus 7]
          Length = 620

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/616 (42%), Positives = 371/616 (60%), Gaps = 5/616 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++D+IVIG GHAGCEAA   A+LG  TAL T     + +M CNP+IGG  KGHLVREID
Sbjct: 2   ENFDIIVIGAGHAGCEAALAGARLGLKTALFTITLDAVANMPCNPSIGGTAKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR AD   IQ R+LN  KGPAV   R Q DR  Y   M++ I   E L + Q E
Sbjct: 62  ALGGEMGRAADKTLIQSRMLNRGKGPAVHSLRAQIDRMAYHNLMKKTIEDTEGLYLKQAE 121

Query: 124 VAGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           +     E +   +  +         C  V++ +GT+L G IH+G     +G     P+  
Sbjct: 122 ITDVLFEDDGKTVRGVRTHLGVEYGCRAVIIASGTYLNGEIHVGTTTYASGPDSVLPARR 181

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +      R KTGTPAR+  ++I +DK E Q  DE + PFSF  +     +++C 
Sbjct: 182 LSDSLKEAGMTLRRFKTGTPARVHKRSIDFDKLEVQHGDEDIQPFSFTNEVPPENKVDCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  TN ETH++IM+NI  S IYSG I + GPRYCPSIEDKI+RF ++  HQ+F+EP GL+
Sbjct: 242 VAYTNAETHKVIMDNIHLSPIYSGRIHAIGPRYCPSIEDKIMRFSDKPRHQLFIEPMGLD 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+  Y  G+S++LP ++Q +F+RTI GLE V I+R  YAIEYD  +P +L PTLE K+  
Sbjct: 302 TEEYYLQGMSSSLPVDVQLKFLRTIKGLENVEIMRNAYAIEYDCCDPNDLLPTLEFKEFH 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           G++ AGQ NGT+GYEEAAAQGLVAGIN+A K    + +   R  SYIG ++DDL +KGV 
Sbjct: 362 GIYGAGQFNGTSGYEEAAAQGLVAGINAALKLKGEEPMVLDRASSYIGTLVDDLCTKGVS 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRM TSR+EYR+ LR DNAD RLT  G ++G I + R   F K  ++       + ++
Sbjct: 422 DPYRMLTSRSEYRLLLRQDNADLRLTETGHRVGLISDERYAAFTKKKEQIEAEVKRVSAI 481

Query: 482 VLTS-KNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   + L+   +S   D         + +  P  + + L  I P+  +    V E++++
Sbjct: 482 NIAPSEELNEYLVSQGTDPINNGIKLTQLIRRPQLTYKGLAFIDPERPELPDDVCEQVEL 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y   Q+ +   ++  E + IP++ DYS + +L  E  EKL+ ++P ++ QAS+I
Sbjct: 542 TIKYEGYIKIQLEQVAAMRKLENKKIPENIDYSKVGSLRLEAAEKLAKIRPLSVGQASRI 601

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +N+LL+Y++
Sbjct: 602 SGVNPADINVLLVYLE 617


>gi|167648979|ref|YP_001686642.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Caulobacter sp. K31]
 gi|189039333|sp|B0T6E1|MNMG_CAUSK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167351409|gb|ABZ74144.1| glucose inhibited division protein A [Caulobacter sp. K31]
          Length = 618

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/617 (53%), Positives = 439/617 (71%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ ++DVIVIGGGHAGCEAA+ +A+ GA T L+THK  T+G MSCNPAIGGLGKGHLVRE
Sbjct: 1   MSNTWDVIVIGGGHAGCEAASASARAGARTLLLTHKRETVGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGR+ D AGIQ+R+LN  KGPAVRGPR+Q DR+LYR AMQ E+ S  NLDV+ 
Sbjct: 61  IDALDGLMGRIGDKAGIQYRLLNRSKGPAVRGPRSQIDRKLYREAMQAELFSHVNLDVVA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E  +++  +  + ++ R   VVLTTGTFL+GVIH G+++I AGR+GD+PS  
Sbjct: 121 IAVEDLIVEDGVVAGAIDGEGAIYRAPRVVLTTGTFLKGVIHQGEIRISAGRVGDAPSIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +      FD GRLKTGTPARLDGKTI WD+ E Q ADE+  PFSF+T +I   QI+CG
Sbjct: 181 LADRLYALGFDMGRLKTGTPARLDGKTIAWDRLEMQAADEQPEPFSFLTTRIDVPQIQCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T  ETH+II E +  SA+Y G     GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+
Sbjct: 241 ITYTTAETHKIIAERLGESAVYGGRATGIGPRYCPSIEDKVVRFADKTSHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNG+ST++  E Q  F+RT+PGLE V +IR GYAIEYDY++P+EL+PTLETK++ 
Sbjct: 301 DDTVYPNGVSTSVSAETQLLFLRTMPGLENVEVIRYGYAIEYDYVDPRELYPTLETKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEA AQGL+AG+N+A      +   F+R ++YIGVMIDDL ++GV 
Sbjct: 361 GLYLAGQINGTTGYEEAGAQGLMAGLNAALAVQGREPAVFARDEAYIGVMIDDLVTRGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLT  G+ LGC+G  R + +A    E   +R+  +S+
Sbjct: 421 EPYRMFTSRAEFRLILRADNADQRLTDRGLALGCVGSVRAEAWAAKKAELEAVRAFARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT    + T      DG+ R     L+ P+ ++  L ++ P    +S +  E++ IE++
Sbjct: 481 TLTPAEANRTGFKVNHDGQRRDVLAMLALPEVTLDRLATVWPQISTWSPMAREQIAIEAA 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  + +  + EE   +P D DY  + +LSNE++EKL+ +KP  L QA++IEG+
Sbjct: 541 YAGYLDRQRDDVEAFRREEDLRLPADLDYGLVGSLSNEVREKLARVKPLTLGQAARIEGV 600

Query: 602 TPAALNLLLIYIKKNTV 618
           TP AL  LL ++++   
Sbjct: 601 TPGALTALLAHVRRAKA 617


>gi|251800244|ref|YP_003014975.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paenibacillus sp. JDR-2]
 gi|247547870|gb|ACT04889.1| glucose inhibited division protein A [Paenibacillus sp. JDR-2]
          Length = 629

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/595 (42%), Positives = 361/595 (60%), Gaps = 2/595 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G  T L+T     +  M CNP+IGG  KGH+VREIDAL G MGR  D   IQ R+LN 
Sbjct: 28  RMGCETLLLTINLDMVAFMPCNPSIGGPAKGHVVREIDALGGEMGRNIDKTFIQMRMLNT 87

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV   R QAD+  Y+  M++ I   ++L + QG       E   I+ IV +  ++ 
Sbjct: 88  GKGPAVHALRAQADKFSYQHTMKKTIEETDHLTLRQGMAEDLIVEDGKIAGIVTKTGAIY 147

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           R   VV+TTGT+LRG I +G+L   +G     PS  L  S  +  F   R KTGTP R+ 
Sbjct: 148 RAKAVVITTGTYLRGKIIMGELMYESGPNNQQPSVKLSASLKELGFKLARFKTGTPPRVH 207

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             TI + KTE Q  D+    FS+ T    N Q+ C +T T+  TH+II +N+  + ++SG
Sbjct: 208 KDTIDFSKTEIQPGDDNPKFFSYETKSSDNEQLPCWLTYTSEATHKIINDNLHRAPMFSG 267

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T   Y  G+ST++PE++Q   +R+
Sbjct: 268 AIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPEGKHTSEYYVQGLSTSMPEDVQLGILRS 327

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           IPGLEKV ++R GYAIEYD + P +L+P+LETK + GLF AGQINGT+GYEEAA QG++A
Sbjct: 328 IPGLEKVEMMRNGYAIEYDAVVPTQLWPSLETKLVDGLFTAGQINGTSGYEEAAGQGIIA 387

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+ARK    + +   R+  YIGVMIDDL +KG  +PYR+ TSRAEYR+ LR DNAD R
Sbjct: 388 GINAARKVQGKEPVVIDRSQGYIGVMIDDLVTKGTSDPYRLLTSRAEYRLLLRHDNADLR 447

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK--TRT 503
           LTP G ++G I E R + F    +        L ++ +  +       +        T  
Sbjct: 448 LTPTGYEIGLISEERYQAFLNKKELVAQEIERLGTVKIKPEVAQPVLDAANSAPIAFTMD 507

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A   L  P+ S   L  + P     +  + E+++I+  YA Y  +Q+ + + +   EK+ 
Sbjct: 508 ALSLLRRPELSYALLEQLSPSELPLTEEMKEQVEIQIKYAGYIEKQLHQVERLSKMEKKK 567

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           IP D  YS +  L++E K+KL+ ++P ++ QAS+I G+TPA +++LL+Y++    
Sbjct: 568 IPDDIVYSEVHGLASEAKQKLADIRPLSIGQASRIAGVTPADISILLVYLEHYNR 622


>gi|146337362|ref|YP_001202410.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Bradyrhizobium sp. ORS278]
 gi|205831491|sp|A4YJT4|MNMG_BRASO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146190168|emb|CAL74160.1| Glucose-inhibited division protein A [Bradyrhizobium sp. ORS278]
          Length = 624

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/620 (54%), Positives = 440/620 (70%), Gaps = 1/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + SYDVIVIGGGHAGCEAAA +A++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+
Sbjct: 4   HTSYDVIVIGGGHAGCEAAAASARMGARTALVTHRFATIGAMSCNPAIGGLGKGHLVREV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDGLMGRVADA GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  I    NL V++G
Sbjct: 64  DALDGLMGRVADAGGIQFRVLNRRKGPAVRGPRAQADRKLYAAAMQSAIRETTNLAVVEG 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E          ++ I + D   + C  VV+TTGTFLRG+IH+G+   PAGR+G++P+  L
Sbjct: 124 EADDLIVVDGRVTGIKLADGRSLACGAVVITTGTFLRGLIHLGEKTWPAGRVGEAPALGL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S     F+ GRLKTGTP RLDG TI W   E Q  D+   PFS +T+ IT  QI+CGI
Sbjct: 184 SRSLEAIGFNLGRLKTGTPPRLDGTTIDWGAVEMQTGDDPAEPFSVLTETITTPQIQCGI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT + TH +I  N+  S +YSG IKS GPRYCPS+EDKIVRFG+R+GHQIFLEPEGL+ 
Sbjct: 244 TRTTIATHEVIRANVHRSPMYSGQIKSTGPRYCPSVEDKIVRFGDRDGHQIFLEPEGLDD 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LPEE+Q   + TIPGLE+V +IRPGYAIEYD+++P+EL PTL+TK++ G
Sbjct: 304 STVYPNGISTSLPEEVQLALLPTIPGLERVRMIRPGYAIEYDHVDPRELEPTLQTKRMKG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQGLVAGIN+A  +     I F R D Y+GVMIDDL ++G+ E
Sbjct: 364 LFLAGQINGTTGYEEAAAQGLVAGINAALAAGGGAPIVFDRADGYLGVMIDDLVTRGITE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +   + +      R++  SL 
Sbjct: 424 PYRMFTSRAEYRLTLRADNADQRLTDKGIALGCVGGERVRFHRRKLAALQAARAVATSLT 483

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +T    +   ++  +DG+ R+A+E ++YP+     + SI P+      +V   L+I++ Y
Sbjct: 484 ITPNEAAKHGLTLNRDGQRRSAFELMAYPEIDFAKVRSIWPELEAIDPVVATHLEIDAKY 543

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  +    + +E  ++  D DY+ +P LSNE + KL+  KP+ + QA +I+GMT
Sbjct: 544 DVYVRRQSEDVDAFRRDEGLVL-GDIDYAIVPGLSNEARAKLTAAKPWTIGQAGRIDGMT 602

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PAAL +L  Y+++   +   
Sbjct: 603 PAALGILAAYLRREARRNKA 622


>gi|67922566|ref|ZP_00516073.1| Glucose-inhibited division protein A subfamily [Crocosphaera
           watsonii WH 8501]
 gi|67855575|gb|EAM50827.1| Glucose-inhibited division protein A subfamily [Crocosphaera
           watsonii WH 8501]
          Length = 634

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/624 (41%), Positives = 371/624 (59%), Gaps = 9/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+D+IV+G GH+GCEAA  AA+LG  T ++T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDSFDIIVVGAGHSGCEAALAAARLGCCTMMLTLNLDRIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q+NL + +
Sbjct: 69  VDALGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYSAVMKEIVENQKNLSIRE 128

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      + + +  I     +  +   V+LTTGTFL G I IG   + AGR G+  + 
Sbjct: 129 GMVTDLVLGKNDEVIGIQTYFGTCFQAKAVILTTGTFLGGRIWIGNKSMEAGRSGEFAAV 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +     F+TGRLKTGTPAR+D +++ + + E Q  DE +  FSF     +   Q+ 
Sbjct: 189 GLTETLNNLGFETGRLKTGTPARVDKRSVDYSRLEPQPPDEEVRWFSFDPAVWVQKEQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT ++TH++I +N+  S IY G I S GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 249 CYLTRTTIKTHQLIKDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE+IQ   +RT+PGLE   ++RP YA+EYD++   + +PTL TKK
Sbjct: 309 REIPELYIQGFSTGLPEKIQLAMLRTLPGLEDCVMLRPAYAVEYDFLPATQCYPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQ+NGTTGYEEAAAQG+VAGIN+ +     + I F R +SY+G +IDDL +K 
Sbjct: 369 IEGLFSAGQVNGTTGYEEAAAQGIVAGINAVKFVKNEEMIIFPREESYLGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        +  L 
Sbjct: 429 LREPYRMLTSRSEYRLILRSDNADQRMTPLGREIGLIDDRRWNLFEEKQANIVAEKERLY 488

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              +  K      I    D +     + T  + L  P F  ++L        +  ++  E
Sbjct: 489 ETRI--KERDEVGIKIVNDTQQKIKGSVTLADLLRRPKFHYEHLEQYGLGNTELKTVEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ I+ ++I     + +P D DY S+  LS E +EKL+ ++P  L Q
Sbjct: 547 GAEIDIKYSGYLKRQQIQIEQISRHSNKKLPSDIDYMSIDTLSMEAREKLTKVRPLTLGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +N LL+Y++  + 
Sbjct: 607 ASRIGGVNPADINALLVYLELRSR 630


>gi|229824622|ref|ZP_04450691.1| hypothetical protein GCWU000282_01969 [Catonella morbi ATCC 51271]
 gi|229785993|gb|EEP22107.1| hypothetical protein GCWU000282_01969 [Catonella morbi ATCC 51271]
          Length = 638

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/621 (40%), Positives = 374/621 (60%), Gaps = 7/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+VIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   HYEVIVVGAGHAGSEAALSAARMGCRTLLLTISLEMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y  AM++ I +  NLD+ QG V
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVQALRAQADKHAYATAMKQTIEACPNLDLKQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+  +  +V    +      VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 DRLVVEEGQVRGVVTSTGARYSADAVVLTAGTSSRGQIIIGELKYSSGPNNTLPSQKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
             ++  F+  R KTGTP R+   +I ++  E Q  D +   FSF+T         + C +
Sbjct: 188 HLLELGFELARFKTGTPMRIHKSSINYEAMEIQPGDSQPNHFSFLTPDADYRPDFVPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH +I  N+  + +++G ++  G RYCPSIEDKIVRF ++  HQIF+EPEGL T
Sbjct: 248 THTSQDTHEVIKANLHRAPMFTGIVEGVGARYCPSIEDKIVRFSDKPRHQIFVEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST++PE++Q + + ++ GLE   ++RPGYAIEYD + P +L  +LETK + G
Sbjct: 308 DEMYIQGLSTSMPEDVQLEMLHSVAGLENAKLMRPGYAIEYDVVIPHQLRASLETKLVRG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGT+GYEEAA QGL+AGIN+AR+    D +   R+D YIGVMIDDL +KG  E
Sbjct: 368 LYTAGQMNGTSGYEEAAGQGLIAGINAARQVQGKDPLIIKRSDGYIGVMIDDLVTKGTTE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + ++R + +       +     LK + 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADLRLTEIGHQIGLVDDQRYETYLAKKALVDAEIKRLKKIT 487

Query: 483 LTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQ 537
           LT K      +  +    +     +A+  L  P+    +L ++ P           E+++
Sbjct: 488 LTPKTPGLEELFERVGSSSLLDGISAFNLLKRPEIRYLDLVTLIPRPEGPLERQEAEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  + + + +++K  E++ IP+D DY ++  L+NE +++L +++P  L QAS+
Sbjct: 548 IQIKYEGYIQKAIEKVEKVKAMEEKRIPEDIDYDAILNLANEARDRLKLIQPTTLAQASR 607

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           + G+ PA + +L +YI++  +
Sbjct: 608 VSGVNPADIAILSVYIQQGKI 628


>gi|149178844|ref|ZP_01857424.1| glucose-inhibited division protein A [Planctomyces maris DSM 8797]
 gi|148842319|gb|EDL56702.1| glucose-inhibited division protein A [Planctomyces maris DSM 8797]
          Length = 610

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/611 (47%), Positives = 400/611 (65%), Gaps = 18/611 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++V+G GHAGCEAA  +A+LGA TAL+T    T+G MSCNPAIGG+ KG +VREIDA
Sbjct: 8   DYDIVVVGAGHAGCEAALASARLGAKTALLTMNCDTVGQMSCNPAIGGVAKGQIVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGRV D  GIQFR+LN+ KGPA+  PR QAD++ Y+  M+ ++  Q+NL + Q  V
Sbjct: 68  LGGEMGRVIDETGIQFRMLNLSKGPAMHSPRAQADKKAYQFCMKWKVEQQDNLALRQEIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  + +  ++  R   V+LTTGTFL+ ++H G+ K   GR G+  + +L +
Sbjct: 128 KSLIVENDQICGVEVHGDATYRARAVILTTGTFLQAIMHTGEAKTKGGRAGEGTTGTLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +  F+  R KTGTPARL+G+TI +   E+Q  DER  PFS+MT+K+T  Q+ C +T 
Sbjct: 188 SLAQLGFELQRFKTGTPARLNGRTIDFSVLEEQPGDERPQPFSYMTEKLTQEQMPCYLTE 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   HR+I EN+  + +YSG I S GPRYCPSIEDK+VRF ERN HQIFLEPEG  T+ 
Sbjct: 248 TNEHVHRVINENLHRAPMYSGQINSTGPRYCPSIEDKVVRFSERNSHQIFLEPEGRYTNE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NGIST+LP ++Q + I +I GLEK  I+R GYA+EYD+  P +L PTLETK+++GL+
Sbjct: 308 YYCNGISTSLPRDVQDEMIHSIRGLEKTEIMRYGYAVEYDFATPTQLKPTLETKRVAGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QGL+AG+N+A K    + +   R ++Y+GV+IDDL +KGV EPY
Sbjct: 368 FAGQLNGTTGYEEAAGQGLLAGLNAALKIAGKEDLILDRNEAYLGVLIDDLVTKGVDEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD R+TPIG ++G + + R ++F  Y  E + +   ++     
Sbjct: 428 RMFTSRAEFRLLLRQDNADRRMTPIGQRIGSVSQERWEQFQAYEAEISQIMEFIRGNRY- 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS--SLVIERLQIESSY 542
                          + +T  E+L   D   +++    P+ + F      IE+  IE  Y
Sbjct: 487 ---------------QGQTLEEWLRRQDTGWEDICGFAPELKAFPLSERAIEQTLIEVQY 531

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E ++ K  E   IP   DY  +P L NE KEKLS +KP N+ QA +I G+T
Sbjct: 532 AGYIKRQTAEIEKQKNVETLHIPDHIDYQLVPNLRNEAKEKLSRVKPRNIGQAGRISGVT 591

Query: 603 PAALNLLLIYI 613
           PA L +L++Y+
Sbjct: 592 PADLTVLVLYL 602


>gi|254475320|ref|ZP_05088706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. R11]
 gi|214029563|gb|EEB70398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. R11]
          Length = 624

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/603 (53%), Positives = 433/603 (71%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIV+GGGHAG EAA  +A++GA TAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHPNYDVIVVGGGHAGTEAAHASARMGARTALVTLTKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  E  +QENLD++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAETEAQENLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GEV  F   ++ I  + + D+S I    V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 AGEVVDFLITESTIHGVRLADDSEISAKAVILTSGTFLRGVIHIGDVSKPGGRMGDKPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F+   GRLKTGTP RLDG+TI WD+ + Q  D+    FSFMT+++   Q++C
Sbjct: 181 RLAERLDSFELPLGRLKTGTPPRLDGRTIAWDQLDAQPGDDEPTFFSFMTNQLYAPQVDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N++ SA+Y G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG 
Sbjct: 241 GITHTNEKTHEIIRQNLQRSAMYGGHIEGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LP EIQ  ++ +I GLEK  I++PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DDHTVYPNGISTSLPVEIQEAYVHSIFGLEKAEILQPGYAIEYDYVDPRALGLDLALKSH 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQINGTTGYEEAAAQGLVAG+N+AR + + + + FSR++SYIGVMIDDLT+ GV
Sbjct: 361 TGLYLAGQINGTTGYEEAAAQGLVAGLNAARFAKREEALTFSRSESYIGVMIDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT +G+++GC+GE+R+  F++ +++ +  R+++ +
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTGLGIEIGCVGEQRKVEFSEKMEKLDAARAVMDA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K +++  I+  QDG  RTA + L++PD    ++  + P+       +  +L+ ++
Sbjct: 481 RTFTPKEVNAAGIAVNQDGNKRTATDVLAFPDVGFDDILPLLPELMTCEDPIRRQLERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E + +K +E   IP+DF Y     LSNELK KL   +P  L QA +++G
Sbjct: 541 LYANYITRQKREIEALKRDEGHHIPRDFSYD-FEGLSNELKGKLERARPETLAQAGRVDG 599

Query: 601 MTP 603
           MTP
Sbjct: 600 MTP 602


>gi|188989799|ref|YP_001901809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. B100]
 gi|205831571|sp|B0RMP9|MNMG_XANCB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167731559|emb|CAP49734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Xanthomonas campestris pv. campestris]
          Length = 634

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 385/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 68  GGAMAKAADLAGIQWRTLNASKGPAVRATRCQADRNLYRSAIRRIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q       + VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGAAEGDSVRGVITQTGLRFEATAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
           +L     +  F   RLKTGTP R+DG+T+ +   ++Q  D+ L   SFM     +  Q+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYTMMDEQPGDDPLPVMSFMGQVSDHPTQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEG
Sbjct: 248 CWITHTTEQTHDIIRGALHRSPLYSGQIEGIGPRYCPSIEDKVVRFADKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVTEIYPNGISTSLPFDVQLALVRSIRGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQALPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADLRLTGVGRAMGLVDDARWARFSSKQEAVQRETARLS 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N               +     + +  P+ S   L  +           V E+
Sbjct: 488 ALWATPGNALGREVVDTLGVPMSRETNVLDLIKRPELSYAALMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  E    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEIGVKYAGYLDRQRDEIARQQRHETTPIPEGFDYAGVRGLSMEVQQKLERVRPQSIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|313671978|ref|YP_004050089.1| glucose inhibited division protein a [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938734|gb|ADR17926.1| glucose inhibited division protein A [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 621

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/614 (47%), Positives = 379/614 (61%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YDVIV+G GHAG EAA  +A++GA T L+T    TI  MSCNPAIGGL KG LV++ID
Sbjct: 6   NNYDVIVVGAGHAGIEAAFASARMGAKTLLLTIYIETIAQMSCNPAIGGLAKGCLVKDID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  DA GIQFR+LN KKGPAVR  R QAD++LYR  M  ++LS+ NLDV Q  
Sbjct: 66  ALGGEMAKCIDATGIQFRILNRKKGPAVRSSRAQADKKLYRQYMTNKLLSEPNLDVKQAV 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  +      + +C ++VLTTGTFL G+IHIG  + PAGR  + PS  L 
Sbjct: 126 VTDILVKDGAVIGVECDTGYIFKCRSLVLTTGTFLNGLIHIGDKRYPAGRANEFPSIHLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +  F+  RLKTGTPARL   TI ++  E+Q  D    PFSF T+ IT  Q+ C I 
Sbjct: 186 ESLKRLGFEVQRLKTGTPARLHADTINFNLLEEQKGDNPPEPFSFETEAITLPQVSCFIA 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +N+  S +YSG I+  GPRYCPSIEDK+ +F ++N HQIFLEPEGL+T 
Sbjct: 246 YTNEHTHQIIRDNMHRSPLYSGVIQGIGPRYCPSIEDKVKKFPDKNRHQIFLEPEGLDTK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG S++LP ++Q    R++ GLEKV  IRP YAIEYD++ P ELF TLETKKI GL
Sbjct: 306 EIYANGFSSSLPIDVQIAMYRSLVGLEKVEFIRPAYAIEYDFVQPYELFHTLETKKIKGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQG++AGIN+             R +S+IGVMIDDL  KGV EP
Sbjct: 366 FFAGQINGTTGYEEAAAQGIIAGINAVLSI-DNKQFVLGRDESFIGVMIDDLVMKGVDEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMF SR+EYR+ LR DNA+ RL   G  LG I   R  RF            +L ++ +
Sbjct: 425 YRMFHSRSEYRLLLREDNAEYRLLDKGYSLGIIPRSRYDRFIHEKTLLEDCLGVLSNIKV 484

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + +     ++    +G      + L  P+  I +L    P    +   ++ + +I  
Sbjct: 485 PYNSKTKDKFATLGVNIEGSIP-LIDLLKRPEVEISDLLEFFP--NNYPDRILNQAEISV 541

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  EA  ++  E   IP + DYS +  L  E  EKL+   P  L QA +I+G
Sbjct: 542 KYEGYIKKQKEEAGRLQKIEGVKIPDNIDYSKIVGLRREYVEKLNKFNPKTLGQALRIKG 601

Query: 601 MTPAALNLLLIYIK 614
           MTPAA++L+ +YIK
Sbjct: 602 MTPAAVSLIHVYIK 615


>gi|225570319|ref|ZP_03779344.1| hypothetical protein CLOHYLEM_06416 [Clostridium hylemonae DSM
           15053]
 gi|225160851|gb|EEG73470.1| hypothetical protein CLOHYLEM_06416 [Clostridium hylemonae DSM
           15053]
          Length = 633

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/621 (42%), Positives = 372/621 (59%), Gaps = 11/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVREI
Sbjct: 12  NDEYDVVVVGAGHAGCEAALAAARLGFCTIVFTVSVDSIALMPCNPNIGGSSKGHLVREI 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+V D   IQ ++LN  KGPAV   R QAD+  Y   M++ + +Q+ L++ Q 
Sbjct: 72  DALGGEMGKVIDKTFIQSKMLNKSKGPAVHSLRAQADKLHYSRTMRQVLENQDRLEIKQA 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV    TE N +  +     ++ RC  V+L TGT+L+     G +    G  G   +N L
Sbjct: 132 EVVNILTEDNKVIGVQTYSGAVYRCRAVILCTGTYLKSRCIYGDISQNTGPNGLQAANYL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
                +      R KTGTPAR+D  T+ + K E+QF DER++PFSF TD   I   Q+ C
Sbjct: 192 TECLKELGIRMYRFKTGTPARIDKNTVDFSKMEEQFGDERIVPFSFTTDPEDIQIDQVSC 251

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+V+F +++ HQ+F+EPEGL
Sbjct: 252 WLTYTNKKTHDIIRANLDRSPLYSGMIEGTGPRYCPSIEDKVVKFADKDRHQVFIEPEGL 311

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y  G+S++LPE++Q+   RT+PGLE V I+R  YAIEYD I+ ++L P+LE + I
Sbjct: 312 ETNEMYIGGMSSSLPEDVQYAMYRTVPGLENVKIVRNAYAIEYDCIDARQLKPSLEFRNI 371

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF  GQ NG++GYEEAAAQGLVAGIN+AR     + +   R+ +YIGV+IDDL +K  
Sbjct: 372 KGLFSGGQFNGSSGYEEAAAQGLVAGINAARMLQGKEPLVIDRSQAYIGVLIDDLVTKES 431

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLT +G + G I + R + F    +        +  
Sbjct: 432 REPYRMMTSRAEYRLLLRQDNADRRLTKLGYEAGLIEKERYEHFLMKEKWITEEIERVNH 491

Query: 481 LVLTSKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICP----DARKFSSLV 532
           + + +       I  + D        T  E +  P+ S + L  I              +
Sbjct: 492 VNVGANE-QVQDILREYDSTPLNSGTTLAELIRRPELSYEALRPIDKKRPVFPEGLEEEI 550

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE++ I   Y  Y  RQ  + ++ K  EKR IP++ DY  + +L  E  +KL   +P ++
Sbjct: 551 IEQVNISIKYDGYIKRQEKQVEQFKKLEKRKIPENIDYDDIKSLRIEAVQKLKEYRPVSI 610

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I G++PA +++LL+Y+
Sbjct: 611 GQASRISGVSPADISVLLVYL 631


>gi|307718006|ref|YP_003873538.1| glucose-inhibited division protein A [Spirochaeta thermophila DSM
           6192]
 gi|306531731|gb|ADN01265.1| glucose-inhibited division protein A [Spirochaeta thermophila DSM
           6192]
          Length = 619

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/613 (45%), Positives = 384/613 (62%), Gaps = 2/613 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA  A++LG ST LIT    TIG MSCNPA+GGL KG++VRE+DAL 
Sbjct: 4   DVIVIGGGHAGIEAALAASRLGCSTVLITQLLDTIGKMSCNPAVGGLAKGNIVREVDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MGR+ D   IQFR+LN  +GPAV+ PR QAD++ Y    +  +  Q+ L + Q  V  
Sbjct: 64  GEMGRLIDRTMIQFRMLNRSRGPAVQCPRAQADKQAYAQRAKWSLEQQKGLFLFQDTVVD 123

Query: 127 FNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           F  +     I  +V +         VVLTTGTF+   I IG+ + P GR+G+  +  L  
Sbjct: 124 FVLDEAGREIRGVVTERGRRFHARKVVLTTGTFMEAKIFIGEYETPGGRLGEPAACGLGG 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F  GRLKTGTPAR+   ++ + K ++Q  DE +IPFSF  D +  RQ+ C IT 
Sbjct: 184 VLRRLGFTVGRLKTGTPARVLRSSLDFSKMQEQPGDEEIIPFSFSHDTLEVRQVPCYITF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  S +Y G I   GPRYCPS+EDK+VRF +R+ HQ+F+EPEGL+T+ 
Sbjct: 244 TTPETHRIIRENLHRSPLYGGRIVGRGPRYCPSLEDKVVRFPDRDRHQVFVEPEGLSTEE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NGIS++LPEE+Q  FI TIPGLE   I+RPGYA+EYDY+ P +L+PTLETK+I GL+
Sbjct: 304 MYLNGISSSLPEEVQEAFIHTIPGLEHAVIMRPGYAVEYDYVEPTQLYPTLETKRIRGLY 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQ NGT+GYEEA  QGLVAGIN+A        +   R ++YIGV+IDDL +KG  EPY
Sbjct: 364 IAGQTNGTSGYEEAGGQGLVAGINAALACRGEPPLVLGRDEAYIGVLIDDLVTKGTKEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR D AD RL     ++G       +R  + I   + ++ LL+   L 
Sbjct: 424 RMFTSRAEYRLALRHDTADIRLLEKAYRIGLQSREMFERLQEKIHVLDAIKELLRQRRLA 483

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            +      +        +  Y+ L  P  ++ +L  + P+  K+    +   +I+  Y  
Sbjct: 484 QEEAEQRRLPQLAPHVGKPLYQVLKDPRVTLDDLAFLVPELSKYPRPWVRTAEIDVKYEG 543

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  R+    ++ +  E   IP  FDYS +  LS+E +EKLS ++P +L QAS+I G+  +
Sbjct: 544 YLLREQQMVEKFRKMEDMRIPDHFDYSEVEGLSSEAREKLSTIRPLSLGQASRISGIRSS 603

Query: 605 ALNLLLIYIKKNT 617
            + +L++Y+ ++ 
Sbjct: 604 DIAVLMVYLSRSR 616


>gi|167571772|ref|ZP_02364646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia oklahomensis C6786]
          Length = 630

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/607 (45%), Positives = 373/607 (61%), Gaps = 15/607 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR+LN  
Sbjct: 1   MGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQFRILNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IH+G      GR GD  + SL +   +     GRLKTGTP R+DG
Sbjct: 121 ARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYS 264
           +TI + K E+Q  D   IP FSF+     + Q + C +T TN  TH II   +  S +Y+
Sbjct: 181 RTIDFSKLEEQPGDLDPIPVFSFIGRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYT 240

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+  YPNGIST+LP ++Q + + 
Sbjct: 241 GVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVH 300

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GLF AGQINGTTGYEEAAAQGL+
Sbjct: 301 SMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGLFFAGQINGTTGYEEAAAQGLL 360

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EPYRMFTSRAEYR+SLR DNAD 
Sbjct: 361 AGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADM 420

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKT 501
           RLT IG +LG + + R   F +     +     L++  +T K L    +T++  K     
Sbjct: 421 RLTEIGRELGVVDDVRWGAFNRKRDAVSRETERLRTTWVTPKTLPAEEATALLGKPIDHE 480

Query: 502 RTAYEFLSYPDFSIQNLFSI----------CPDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +  E L  P  S + +  +            D     + + E+++I   Y  Y  RQ  
Sbjct: 481 YSLAELLRRPGVSYEGVCELRNGECGPTEPLADDEILLAQIKEQIEIGIKYQGYIERQAG 540

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           E +     E   +P   DY+ +  LS E+ +KL+  +P  + QAS+I G+TPAA++LL++
Sbjct: 541 EIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGVTPAAISLLMV 600

Query: 612 YIKKNTV 618
           ++KK  +
Sbjct: 601 HLKKRGL 607


>gi|254488415|ref|ZP_05101620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter sp. GAI101]
 gi|214045284|gb|EEB85922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseobacter sp. GAI101]
          Length = 623

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/623 (53%), Positives = 436/623 (69%), Gaps = 1/623 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M + + +DVIVIGGGHAG EAA  AA++G +TAL+T     IG MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKHFDVIVIGGGHAGAEAAHAAARMGVATALVTMSRDGIGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPRTQADR++YR  M  E   QENL +
Sbjct: 61  REIDAMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRTQADRKIYRTEMLLETERQENLTI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+GEV  F  +   +S +V+ D S +    V+LTTGTFLRGVIHIG +    GRMGD  S
Sbjct: 121 IEGEVVDFMMQGEAVSGVVLADQSEVFAKAVILTTGTFLRGVIHIGDVSRSGGRMGDKAS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      F+   GRLKTGTP RLDG+TI W K E Q  DE    FSF++   T +QI 
Sbjct: 181 VKLAERIDSFNLPLGRLKTGTPPRLDGRTIDWAKLESQPGDEEPTLFSFLSTAPTAKQIS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN +TH II EN+  SA+Y G I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEG
Sbjct: 241 CGITHTNEKTHDIIRENLSRSAMYGGHIEGVGPRYCPSIEDKVVRFSDKTSHQVFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++   +YPNGIST+LPE++Q  ++R++ GLE V I++PGYAIEYDY++P+ L  TL+ + 
Sbjct: 301 VDDHTIYPNGISTSLPEDVQLAYVRSMEGLENVEILQPGYAIEYDYVDPRALDLTLKVRS 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQINGTTGYEEAA QGLVAG+N+A  S   D + FSR+ SYIGVMIDDLT++G
Sbjct: 361 VPGLYLAGQINGTTGYEEAAGQGLVAGLNAALASQGKDPVIFSRSQSYIGVMIDDLTTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+ ++LGC    R + F++ ++       LL+
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTPLAIELGCTTTTRAEVFSEKMKRLKEATDLLQ 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           S   + K +  + I   QDG  RT ++ LS+PD   ++L  + P           +++ +
Sbjct: 481 SDKFSPKVIEESGIKINQDGSKRTGFQLLSFPDVKFEDLIPLDPRLEAVDEETRRQVERD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ  +   ++ +E  LIP  FDY+ +  LSNELK KL  ++P NL QA++I+
Sbjct: 541 ALYANYIARQQRDIDVLQKDEAHLIPDGFDYAPIDGLSNELKSKLIRVRPTNLAQAARID 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           GMTP+AL LLL ++K++  K + 
Sbjct: 601 GMTPSALTLLLSHLKRDARKKSA 623


>gi|284097362|ref|ZP_06385486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283831127|gb|EFC35113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 625

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/618 (46%), Positives = 387/618 (62%), Gaps = 3/618 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGGHAGCEAA  AA++G    L+T     I  M CNPA+GG+GKGHLV+EIDAL 
Sbjct: 6   DIIVIGGGHAGCEAALAAARMGCRVLLLTIDQDMIAHMPCNPAVGGIGKGHLVKEIDALG 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G +GR  D AGIQFR+LN +KGPAVR  R Q D+ LYR AMQ  +  Q NL+++ G    
Sbjct: 66  GEIGRNTDKAGIQFRMLNTRKGPAVRATRVQCDKALYRKAMQDTLAHQPNLEIVSGTANR 125

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
             T+   I  +V      +    V++T+GTFL+G+IHIG   +P GR G++P+  L +  
Sbjct: 126 LLTKGGTIRGVVTDSGETVHAEAVIITSGTFLKGLIHIGMSHMPGGRAGEAPAEHLSDCM 185

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
             F F+ GRLKTGTP RLD  TI +    +Q  D    PFSF T +ITN QI C +T TN
Sbjct: 186 RDFGFEVGRLKTGTPPRLDRDTIDFSVMGEQPGDVPPRPFSFRTTRITNPQICCHLTYTN 245

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH II  N+  S +Y G I S GPRYCPSIEDK+VRF ++  HQIF+EPE L++   Y
Sbjct: 246 ERTHDIIRNNLDRSPMYMGVIDSTGPRYCPSIEDKVVRFEDKTQHQIFVEPEELDSPSFY 305

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q   ++TIPGL++  +++PGYAIEYDY  P +L  TLETK + GL+ A
Sbjct: 306 PNGISTSLPVDVQAALLKTIPGLDRATMLKPGYAIEYDYFPPYQLHQTLETKNVKGLYHA 365

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGT+GYEEAAAQG++AGIN+A +      +   R+ +YIGV+IDDL +K   EPYRM
Sbjct: 366 GQINGTSGYEEAAAQGIMAGINAALQVKGEPPLILDRSQAYIGVLIDDLITKDAREPYRM 425

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL--T 484
           FTSRAEYR+ LR DNAD RL   G +LG + +    +F +  +     +  L    L  T
Sbjct: 426 FTSRAEYRLLLREDNADQRLMDTGHRLGLVSDDLHAKFEEKQRVVENEKLRLSQTRLPWT 485

Query: 485 SKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            +     T I  K      T  + L  P+ S   L  I  +A   ++ + E ++I   Y 
Sbjct: 486 PEQAERWTRIEPKMPDPGATMAQLLKRPEVSYTRLMDIAGEANPANTKIGEAVEIAIKYD 545

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ+ + ++ +  E + IP +F Y  +   SNE+ EKLS ++P  + QAS+I GMTP
Sbjct: 546 GYIKRQLDQIEKFQKLEGKSIPSNFRYDRVTGFSNEVAEKLSKIRPATVGQASRISGMTP 605

Query: 604 AALNLLLIYIKKNTVKLN 621
           AA++LLL+ +++     N
Sbjct: 606 AAISLLLVALERFQRTAN 623


>gi|224372353|ref|YP_002606725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nautilia profundicola AmH]
 gi|223588715|gb|ACM92451.1| glucose-inhibited division protein A [Nautilia profundicola AmH]
          Length = 623

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/621 (44%), Positives = 375/621 (60%), Gaps = 5/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA   A++G    L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   KEFDVIVVGGGHAGIEAALAPARMGKKVLLLTMLVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D AGIQFRVLN  +GPAVRG R Q D + YR+ M+   L+  NL V Q  
Sbjct: 62  ALGGEMALATDHAGIQFRVLNENRGPAVRGSRAQIDMDRYRIYMRTVCLNTPNLTVAQEI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  +     +  +   ++LTTGTF+RG++H G +K+  GR  + P+  + 
Sbjct: 122 VDEILVKNGKVVGVKTNLLNEYKTKALILTTGTFMRGIMHFGPVKLEGGRFHELPAKKIS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
            S     F   RLKTGT AR+D +TI + K E Q  DE   PFSF TDK      Q+ C 
Sbjct: 182 KSLEDLGFKLERLKTGTTARIDARTIDFSKMEIQPGDENPKPFSFRTDKKTFNPTQLPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N   + +++G I+  GPRYCPSIEDK+ +F ++  H +F+EP+ L 
Sbjct: 242 ITYTNENTHDIIKSNFHRAPLFTGQIEGVGPRYCPSIEDKLNKFPDKERHHVFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q  FI +IPGLE   I+R GYAIEYD+I P  L  +LETK+I 
Sbjct: 302 ATEYYLNGLSTSLPMDVQEDFIHSIPGLENAKIVRFGYAIEYDFIQPTNLKHSLETKEIE 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+A K +  + I F R ++YIGV+IDDL +KG  
Sbjct: 362 GLFFAGQINGTTGYEEAAAQGIMAGINAALKIDGKEPIIFRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+ LR DNA  RL   G +LG + ++  +R  K  +E N    +L   
Sbjct: 422 EPYRMFTSRSEYRLLLREDNAILRLADYGYELGILDDKTYERVQKLREEINRGMKILNET 481

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +T     N     +  ++        +      F+ + L  + P+ + FS   +E++ I
Sbjct: 482 FVTPNKQINAMLEEMGEEKIQSKMEIRKIAGRHTFNREKLLKLAPEFKDFSEDALEQILI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  RQ  +  ++K      IP+DF+Y  +P LS E+ EKL   +P  L  AS+I
Sbjct: 542 DARYHHYIERQKAQIDKMKEMLSVKIPEDFEYKGIPGLSREIVEKLEKFRPPTLFAASEI 601

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+TPAA++++ +YI     K
Sbjct: 602 SGVTPAAIDIIHMYINMRKKK 622


>gi|311085751|gb|ADP65833.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
          Length = 628

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/625 (46%), Positives = 394/625 (63%), Gaps = 6/625 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV
Sbjct: 1   MFNLRNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDAL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +
Sbjct: 61  KEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +
Sbjct: 121 LEAEVKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QI 238
             L     +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   +  QI
Sbjct: 181 IDLSVRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPE
Sbjct: 241 PCYLTHTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K
Sbjct: 301 GLSSIKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++
Sbjct: 361 LIKGLFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + L
Sbjct: 421 GTEEPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K   ++  +L +  +         K  +  E L  P    Q+L S+            I 
Sbjct: 481 KKNKISPISLDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIG 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++ E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ Q
Sbjct: 541 QIENEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA+++LLI++KK + K
Sbjct: 601 ASRISGITPAAISILLIHLKKESYK 625


>gi|260881794|ref|ZP_05405237.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mitsuokella multacida DSM 20544]
 gi|260847903|gb|EEX67910.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mitsuokella multacida DSM 20544]
          Length = 636

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/628 (41%), Positives = 386/628 (61%), Gaps = 10/628 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAG EAA  AA++G  T L T     I  M CNP++GG GKGHLVRE+DA
Sbjct: 7   SYDVIVIGAGHAGVEAALAAARIGCRTLLATLSMDNIALMPCNPSVGGPGKGHLVRELDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQFR+LN  KGPAV   R QAD++LY+  M+      ENLDV Q  +
Sbjct: 67  LGGEMGVNADKTCIQFRMLNTGKGPAVHALRAQADKKLYQFTMKETCEKTENLDVKQILI 126

Query: 125 AGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  +K  +  ++++   +     +++ TGT+LRG I +G+     G  G  P+   
Sbjct: 127 TDLLLTEDKKAVRGVLVETGEVYLAPAIIMATGTYLRGRIIVGEHTYSGGPNGQRPAMKF 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S         R KTGTPAR+D +T+ ++K + Q  DE    FSFM+D+ T  Q+ C +
Sbjct: 187 SDSLKAAGIRLMRFKTGTPARVDARTLDYEKMQIQPGDEEARNFSFMSDERTREQVPCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+I+ +N+  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEGL+T
Sbjct: 247 TYTNEATHKILRDNMDRAPMANGIIEGIGPRYCPSIETKILRFPDKDRHQLFLEPEGLHT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST++P ++Q  F++TIPGLE  +++R GYAIEYD I+P +L PTLE K I G
Sbjct: 307 NEVYVQGMSTSMPMDVQLAFLKTIPGLEHAHVMRAGYAIEYDCIDPTQLKPTLEFKDIKG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            F AGQ NGT+GYEEAAAQG++AGIN+A    K + +   R+++YIGV+IDDL +KG  E
Sbjct: 367 FFSAGQANGTSGYEEAAAQGIIAGINAAMFIQKREPLILKRSEAYIGVLIDDLVTKGTNE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R  RF K  ++      LLK   
Sbjct: 427 PYRIMTSRAEYRLLLRQDNADLRLTPYGRRVGLVKDDRWARFLKKKEDIEAAMKLLKETN 486

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +     ++  +     +     +   + L       + L    P+  + +  V ++++  
Sbjct: 487 INPSQETNARLQEAGIEPIKSAQPLADLLRRQQVDYEKLRLAYPELPELAKEVRQQVETS 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ +   ++  E +L+P+D DY  +P+L +E +EKL+ ++P ++ QA +I 
Sbjct: 547 ILYEGYIKKQLEQVAHMEKLEAKLLPEDIDYQDVPSLRDEAREKLAAIRPRSVGQAGRIS 606

Query: 600 GMTPAALNLLLIYIKKNTV-----KLNE 622
           G++PA +++LL+++++        K NE
Sbjct: 607 GVSPADVSVLLVWLEQQKRLHDTAKQNE 634


>gi|37520450|ref|NP_923827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gloeobacter violaceus PCC 7421]
 gi|81710866|sp|Q7NM86|MNMG_GLOVI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|35211444|dbj|BAC88822.1| glucose inhibited division protein A [Gloeobacter violaceus PCC
           7421]
          Length = 656

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/612 (42%), Positives = 367/612 (59%), Gaps = 6/612 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G GH+GCEAA  AA+LG  T L+T    TI    CNPA+GG  K  LV E+DA
Sbjct: 37  EFDVVVVGAGHSGCEAALAAARLGCRTLLVTMNLDTIAWQPCNPAVGGPAKSQLVHEVDA 96

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M ++ D   +Q RVLN  +GPAV   R Q D+  Y   +++ + +  NL + QG++
Sbjct: 97  LGGEMAKITDRTYLQKRVLNSSRGPAVWALRAQTDKREYARELKQVLEATPNLTLRQGQI 156

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              +   +  I  +    +    C  V+LTTGTFL G I IG+  + AGR G+  +  L 
Sbjct: 157 TDIHLGPHDEICGVGTFFDVHFACRAVILTTGTFLGGRIWIGRKSMSAGRAGEFAAEGLT 216

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  +  F+TGRLKTGTPAR+D +T+ +   E Q  D  L  FSF     +   Q+ C +
Sbjct: 217 ATLERLGFETGRLKTGTPARVDRRTVDFGVMEVQPPDPELRWFSFDPRAWVEREQLNCYL 276

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +++  S +YSGDI++ GPRYCPSIEDKIVRF ++  HQIF+EPEG +T
Sbjct: 277 TRTTAATHQVIRDHLHLSPMYSGDIEARGPRYCPSIEDKIVRFADKESHQIFIEPEGRDT 336

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST+LPE +Q   +RT+PGLE   ++RP YA+EYDY+   + + TL TK++ G
Sbjct: 337 PELYVQGFSTSLPETVQIAMLRTLPGLEACAVLRPAYAVEYDYLPATQCYATLMTKRVEG 396

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+AR       +   R  SYIG +IDDL +K + E
Sbjct: 397 LFCAGQINGTTGYEEAAAQGIVAGINAARLVRGEALVILPREGSYIGTLIDDLVTKEIRE 456

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G ++G + + R   + K I      R  L++  
Sbjct: 457 PYRMLTSRSEYRLVLRSDNADRRLTPLGREIGLVDDERWGLYQKKIAAITCERQRLETTR 516

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L   N     +       + T  + L  P     +L S+        + V E ++IE  Y
Sbjct: 517 L---NARDLPVHLAAKPGSITLADLLRRPGLHYGDLESLNQGVL-LDAQVREGVEIEVKY 572

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ  + + +  +  R+IP D DY  L  LS E +EKL+ ++P  + QA +I G+ 
Sbjct: 573 SGYIERQNEQIERVSAQHARVIPADLDYERLSTLSKESREKLNRIRPRTIGQAGRIGGVN 632

Query: 603 PAALNLLLIYIK 614
           PA ++ LL+Y++
Sbjct: 633 PADVSALLVYLE 644


>gi|166032900|ref|ZP_02235729.1| hypothetical protein DORFOR_02621 [Dorea formicigenerans ATCC
           27755]
 gi|166027257|gb|EDR46014.1| hypothetical protein DORFOR_02621 [Dorea formicigenerans ATCC
           27755]
          Length = 640

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/624 (42%), Positives = 381/624 (61%), Gaps = 15/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ VIG GHAGCEAA  AA++G  T + T    +I  M CNP IGG  KGHLV+E+DA
Sbjct: 14  EYDIAVIGAGHAGCEAALAAARMGFKTVVFTVSVESIAMMPCNPNIGGSSKGHLVKEVDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+V D   IQ ++LN  KGPAV   R QAD+E Y   M+R + +QENLDV Q EV
Sbjct: 74  LGGEMGKVIDKTFIQSKMLNQSKGPAVHSLRAQADKEQYSRTMRRVLENQENLDVRQTEV 133

Query: 125 AGFNTE------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               TE      K  +  + +    + R   VVL TGT+LR     G++    G  G   
Sbjct: 134 VNILTEEVCESGKKKVIGVQILSGGIYRVKAVVLCTGTYLRARCVYGEVSNATGPNGLQA 193

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNR 236
           +N L         +  R KTGTPAR+D ++I ++K E Q+ DER+ PFSF T  D I   
Sbjct: 194 ANHLTECLKNLGINMYRFKTGTPARIDKRSIDFNKMEAQYGDERITPFSFTTNPDDIQID 253

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+E
Sbjct: 254 QVPCWLTYTNEKTHEIIRNNLDRSPLYSGMIEGTGPRYCPSIEDKVVRFADKNRHQVFIE 313

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG++T+ +Y  G+S++LPE++Q+   R++ GLE   I+R  YAIEYD I+ ++L P+LE
Sbjct: 314 PEGIDTNEMYIGGMSSSLPEDVQYDMYRSVAGLEHAKIVRNAYAIEYDCIDARQLKPSLE 373

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            ++I GLF  GQ NG++GYEEAA QGL+AGIN+ARK  K + +   R+ +YIGV+IDDL 
Sbjct: 374 FREIEGLFSGGQFNGSSGYEEAACQGLIAGINAARKLQKKEAVVLDRSQAYIGVLIDDLV 433

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K   EPYRM TSRAEYR+ LR DNAD RLT IG ++G I + R +R     +      S
Sbjct: 434 TKESHEPYRMMTSRAEYRLLLRQDNADQRLTEIGYEIGLISQDRYERLKLKEKLIEEEVS 493

Query: 477 LLKSLVL-TSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSIC---PDAR-KFS 529
            ++ + + TS+ + +    ++        +  E +  P+ + Q L +I    P+     S
Sbjct: 494 RVEHVHVGTSEKVQNLLAQYQSTPLNSGISLAELIRRPELTYQVLTTIDEARPEFPKDLS 553

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E++ I   Y  Y  RQ  + ++ K  E + IP++ DY  + +L  E  +KL   +P
Sbjct: 554 EEVSEQVNISIKYDGYIKRQKKQVEQFKKLENKKIPENIDYDQVKSLRIEAVQKLKEFRP 613

Query: 590 FNLLQASKIEGMTPAALNLLLIYI 613
            ++ QAS+I G++PA +++LL+Y+
Sbjct: 614 VSIGQASRISGVSPADISVLLVYL 637


>gi|21229855|ref|NP_635772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66766732|ref|YP_241494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|24636867|sp|Q8PDG1|MNMG_XANCP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170591|sp|Q4UZP9|MNMG_XANC8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21111356|gb|AAM39696.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572064|gb|AAY47474.1| glucose inhibited division protein A [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 634

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 387/623 (62%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  AA+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 68  GGAMAKAADLAGIQWRTLNASKGPAVRATRCQADRNLYRSAIRRIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q       + VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHNGAAEGDSVRGVITQTGLRFEATAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
           +L     +  F   RLKTGTP R+DG+T+ +   ++Q  D+ L   SFM     +  Q+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYTMMDEQPGDDPLPVMSFMGQVSDHPTQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EPEG
Sbjct: 248 CWITHTTEQTHDIIRGALHRSPLYSGQIEGIGPRYCPSIEDKVVRFADKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVTEIYPNGISTSLPFDVQLALVRSIRGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR++  L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARQAQALPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADLRLTGVGRAMGLVDDARWARFSSKQEAVQRETARLS 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N               +     + +  P+ S   L  +           V E+
Sbjct: 488 ALWATPGNALGREVVDTLGVPMSRETNVLDLIKRPELSYAALMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  E    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEIGVKYAGYLNRQRDEIARQQRHETTPIPEGFDYAGVRGLSMEVQQKLERVRPQSIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|242279069|ref|YP_002991198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio salexigens DSM 2638]
 gi|242121963|gb|ACS79659.1| glucose inhibited division protein A [Desulfovibrio salexigens DSM
           2638]
          Length = 627

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/615 (45%), Positives = 376/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D+IV G GHAGCEAA  AA LG  T L+T     IG +SCNPAIGGL KGH+V+EID
Sbjct: 9   EKFDLIVAGAGHAGCEAAMAAANLGLKTLLLTINVDRIGHLSCNPAIGGLAKGHMVKEID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG  +D AGIQFR+LN +KGPAVR  R Q DR  Y   +Q++I SQ+NL V Q  
Sbjct: 69  ALGGCMGIWSDKAGIQFRILNTRKGPAVRASRAQMDRNEYMRVVQKDIFSQDNLWVRQAM 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E    + +V Q        +V+LTTGTFL+G++HIG      GRMGD  S  + 
Sbjct: 129 AESLIVEDGKAAGVVTQIGEKFHARSVMLTTGTFLQGLMHIGLENFSGGRMGDPASVGMS 188

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S        GRLKTGT  RL   +I +DK E+Q  D+   PFSF T +I+  Q+ C IT
Sbjct: 189 KSLKDAGLTLGRLKTGTTPRLLKDSIDYDKLEEQRGDDPPQPFSFRTKEISLPQVSCHIT 248

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN + H  I    + S +++G IK  G RYCPSIEDK+ RF E++ HQIFLEPEG ++ 
Sbjct: 249 YTNEKAHEAIRSGFERSPMFTGVIKGTGARYCPSIEDKVARFPEKDRHQIFLEPEGYDSP 308

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYP+GI T+LP ++Q + I +I GLE+  I+RPGYAIEYD++ P +L PTLETK + GL
Sbjct: 309 EVYPSGIPTSLPLDVQKRMIHSIEGLEQAQIVRPGYAIEYDFVPPTQLLPTLETKVLPGL 368

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQGL A  N+  K    D    SR  +YI V++DDL +KG LEP
Sbjct: 369 YLAGQINGTSGYEEAAAQGLWAACNAFCKLTGRDPFLLSRDQAYIAVLVDDLVTKGTLEP 428

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR  NAD RLT IG +LG + +     ++   +  + + +++ S  +
Sbjct: 429 YRMFTSRAEYRLLLREGNADLRLTEIGRELGLVKDDHWALYSAKKKGLDEVLAMMNSTQI 488

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +    T I      K+      L  P+ SI ++    P+   ++  +I   + + 
Sbjct: 489 KPDQPTREIITKIGGTVPNKSVPLAAVLRQPELSITDMIHFKPEIENYADDIIAEAETQI 548

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ     + +  E   +P+D DYS++  L+ E  EKL+ ++P  L QAS+I G
Sbjct: 549 KYEGYLVRQQELVDKFRKMESVSLPEDIDYSAVAGLTREAVEKLTEVRPLTLGQASRISG 608

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++ + I++KK
Sbjct: 609 ITPAAVSSIEIHLKK 623


>gi|86610246|ref|YP_479008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123500771|sp|Q2JI26|MNMG_SYNJB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86558788|gb|ABD03745.1| glucose-inhibited division protein A [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 643

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/616 (42%), Positives = 368/616 (59%), Gaps = 6/616 (0%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           H+GCEAA  AA+LG +T ++T     I    CNPA+GG  K  LV EIDAL G MG+V D
Sbjct: 24  HSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDALGGEMGKVTD 83

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNI 133
              +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +G V        + 
Sbjct: 84  RTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLTIREGTVTDLVLGRNDE 143

Query: 134 ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
           +  +V    ++  C  V+LTTGTFL G I IG+    AGR G+     L ++  +  F+T
Sbjct: 144 VVGVVTHFGTIFGCRAVILTTGTFLGGRIWIGRHWQAAGRAGEFAVEGLTDTLRQLGFET 203

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRI 252
           GRLKTGTPAR+D +++ +   E+Q  D  +  FSF  +  +   Q++C +TRT  ETHRI
Sbjct: 204 GRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDPEVWVPREQMDCYLTRTTPETHRI 263

Query: 253 IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIST 312
           I EN+  + +Y G +++ GPRYCPSIEDKIVRF ++  HQIF+EPEG +   +Y  G ST
Sbjct: 264 IRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLPELYIQGFST 323

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT 372
            +PE+IQ Q +R++PGLE+  ++RP YA+EYDY+   +L+PTL TKK+ GLF AGQINGT
Sbjct: 324 GMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGLFCAGQINGT 383

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAE 432
           TGYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL +K + EPYRM TSR+E
Sbjct: 384 TGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIGTLIDDLCTKELREPYRMLTSRSE 443

Query: 433 YRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS 492
           YR+ LR DNAD RLTP+G + G I +RR   F             L++  + + +L+   
Sbjct: 444 YRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQARIAAEIERLETQRVKAHDLAGIQ 503

Query: 493 IS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQ 549
           +S    +    + T  E L        +L  +     +      E  +I   Y+ Y  RQ
Sbjct: 504 LSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAAEIAVKYSGYIQRQ 563

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
             + +++  +  R +P D DY S+P LS E ++KLS ++P  + QA++I G+ PA +N L
Sbjct: 564 QSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLTVGQAARIGGVNPADINAL 623

Query: 610 LIYIK-KNTVKLNEIV 624
           LIY++ +   +  + V
Sbjct: 624 LIYLEVRQRQRAADPV 639


>gi|302393073|ref|YP_003828893.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
 gi|302205150|gb|ADL13828.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
          Length = 631

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/619 (42%), Positives = 384/619 (62%), Gaps = 9/619 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAGCEAA  AA+L   T ++T     +  M CNPA+GG  K  +VREID
Sbjct: 2   KNYDIIVVGTGHAGCEAALAAARLDCKTLVLTVDLDNVALMPCNPAVGGPAKSQMVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G + +  D + IQ R LN  KGPAV+  R Q D++ Y L M++ +  ++NL++ QG 
Sbjct: 62  ALGGEIAKNLDRSFIQLRRLNTGKGPAVQALRAQVDKKDYSLNMKQVLEEEDNLELRQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  + ++         V+LTTGTFL+G I IG     +G     P+N+L 
Sbjct: 122 VTELLIENDKVEGVKLKTGIEFYSQKVILTTGTFLKGSIIIGDYSFNSGPHNQFPANALS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECG 241
           N+  +  F+  R KTGTP R+D +T+ + K E+Q   +  + FSF  +       QI C 
Sbjct: 182 NNLEELGFEIRRFKTGTPPRIDKRTVDFSKLEEQPGIDEDVSFSFADIASAEQKDQISCW 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN ETH++I ENI  S +Y G I+  GPRYCPSIEDK+++F ++  HQ+FLEPEG  
Sbjct: 242 LTETNQETHQLIRENIDRSPLYGGVIEGQGPRYCPSIEDKVMQFPDKKSHQLFLEPEGEY 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +Y  G ST+LPE++Q + + T+PG E+  I+RPGYAIEYD INP +L PTLETK I+
Sbjct: 302 IYEMYLAGFSTSLPEDVQIEMLHTLPGFEEAEIMRPGYAIEYDCINPLQLKPTLETKLIT 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAA QGL+AGIN+ ++    + +   R+++YIGV+IDDL ++G  
Sbjct: 362 GLYTAGQINGTSGYEEAAGQGLMAGINAVQRLKGEEPVILLRSEAYIGVLIDDLVTQGTQ 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLTP+G +LG I E R + F    +     +  LK +
Sbjct: 422 EPYRMLTSRAEYRLLLRHDNADLRLTPLGYELGLISEDRYRDFIDKKEAIEAEKKRLKEV 481

Query: 482 VLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L   +      + K+ G T      T    L  P+   ++L ++  D  + SS V E +
Sbjct: 482 KLHPDD--DVQATLKELGSTGINNVDTLARLLRRPELDYESLAALDSDRPELSSEVKEEV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  RQ+ + +  +  + + IP+D DYS +  LS+E  EKL  ++P ++ QA+
Sbjct: 540 EIQLKYEGYINRQLKQVENQQELDGQKIPQDIDYSEISGLSDESLEKLDKIRPMSVGQAA 599

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+ PA ++LL +Y++K
Sbjct: 600 RISGVKPADISLLTVYLEK 618


>gi|114705861|ref|ZP_01438764.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
 gi|114538707|gb|EAU41828.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
          Length = 631

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/614 (56%), Positives = 450/614 (73%), Gaps = 1/614 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGGHAGCEAA+ +A+ GA+T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDAL 
Sbjct: 15  DVVVIGGGHAGCEAASASARFGATTVLVTHRFDTIGAMSCNPAIGGIGKGHLVREIDALG 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GLMG VADAAGIQFR+LN  KGPAV GPRTQADR+LY  AMQ +I +  NL V++G+V  
Sbjct: 75  GLMGEVADAAGIQFRMLNRSKGPAVHGPRTQADRKLYGEAMQAKIAAHANLSVVEGDVFD 134

Query: 127 F-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T +  +  ++  D   + C  VVLTTGTFL G+IHIG  +IPAGRMG+ PS  L  +
Sbjct: 135 LDLTPEGEVQGVIFADGRRLACGAVVLTTGTFLSGLIHIGTQRIPAGRMGEDPSVGLSGT 194

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGTPARLDG+TI W   E Q AD+  +PFS++TD+ITNRQIECG+TRT
Sbjct: 195 LKRLGLSLGRLKTGTPARLDGRTIDWASIESQAADDEPVPFSYLTDRITNRQIECGVTRT 254

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +THRII +NI+ SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQ+FLEPEGL+   V
Sbjct: 255 TPDTHRIIRDNIRKSALYSGQIEGVGPRYCPSIEDKIVKFGDRDGHQVFLEPEGLDDHTV 314

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+ST++PE++Q +F+R+IPGLE V I+R GYAIEYD+I+P+EL   L  +K  GL+L
Sbjct: 315 YPNGLSTSMPEDVQLEFLRSIPGLENVEILRAGYAIEYDHIDPRELDRHLAVRKARGLYL 374

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+A  + K   +   R D+Y+GVM+DDLT  GV EPYR
Sbjct: 375 AGQINGTTGYEEAAAQGLLAGLNAACLAGKAAPVAVGRADAYLGVMVDDLTRTGVTEPYR 434

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLR DNAD RLTP+ ++LG  G  R +RF K  +     R+LL+   LT 
Sbjct: 435 MFTSRAEFRLSLRADNADRRLTPLAVELGIAGAERTERFLKSEEGLAKGRALLEERTLTP 494

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   +S  +DG+ R+A++ LS     +  L +I P+  K +    ER +IE++Y  Y
Sbjct: 495 NEAAKHGLSLNKDGRRRSAWQLLSQAGIDLGRLSAIWPELGKIAGKTRERTEIEAAYDVY 554

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E R+IP + D  SLP LSNEL++KL+  +P  L +A +I+GMTPAA
Sbjct: 555 LDRQRKDQDRLRRDENRVIPTELDLKSLPGLSNELRQKLASRRPQTLAEAERIDGMTPAA 614

Query: 606 LNLLLIYIKKNTVK 619
           L L+L+ I++N VK
Sbjct: 615 LALILVAIRRNEVK 628


>gi|15616631|ref|NP_239843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11132238|sp|P57117|MNMG_BUCAI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25300002|pir||A84930 glucose inhibited division protein A [imported] - Buchnera sp.
           (strain APS)
 gi|10038694|dbj|BAB12729.1| glucose inhibited division protein A [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 628

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/625 (45%), Positives = 394/625 (63%), Gaps = 6/625 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV
Sbjct: 1   MFNLRNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDAL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +
Sbjct: 61  KEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +
Sbjct: 121 LEAEVKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QI 238
             L     +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   +  QI
Sbjct: 181 IDLSVRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPE
Sbjct: 241 PCYLTHTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K
Sbjct: 301 GLSSIKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++
Sbjct: 361 LIKGLFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + L
Sbjct: 421 GTEEPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K   ++  +  +  +         K  +  E L  P    Q+L S+            I 
Sbjct: 481 KKNKISPISPDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIG 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++ E  YA Y  RQ  E +     E   +   +DY+ +  LS+E+ +KL+  KP ++ Q
Sbjct: 541 QIENEIKYAGYIKRQSEEIERHLKNENTFLSSIYDYNKIRGLSSEVVKKLNDYKPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA+++LLI++KK + K
Sbjct: 601 ASRISGITPAAISILLIHLKKESYK 625


>gi|34101970|gb|AAQ58337.1| glucose inhibited division protein A [Chromobacterium violaceum
           ATCC 12472]
          Length = 605

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/598 (43%), Positives = 366/598 (61%), Gaps = 8/598 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G +T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR LN  
Sbjct: 1   MGCATLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDIGGIQFRTLNAS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   +       R
Sbjct: 61  KGPAVRATRAQADRILYKAAIREMLENQPNLTLFQQPVDDLLIEGDRVVGAITAIGITFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TVVLT GTFL G IH+G      GR GD  +++L     + +   GRLKTGTP R+DG
Sbjct: 121 AKTVVLTAGTFLSGKIHVGLENYTGGRAGDQAASTLGERLRELNLPVGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +   E+Q  D     FS+   + +  +Q+ C IT TN  TH II      S +++G
Sbjct: 181 RSVDFSVMEEQPGDTPEPVFSYRGKRAMHPKQLPCWITHTNERTHDIIRSGFDRSPMFTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL T   YPNGIST+LP +IQ   +R+
Sbjct: 241 VIEGVGPRYCPSIEDKINRFADKDSHQVFLEPEGLTTHEFYPNGISTSLPFDIQLAAVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYDY +P+ L  +LETK I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 IRGMENAHILRPGYAIEYDYFDPRGLKASLETKAIQGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+   + + +  C  R ++Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 361 GLNAGLFAREQEAWCPRRDEAYLGVLVDDLITKGVSEPYRMFTSRAEFRLQLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS----TSISFKQDGKT 501
           LT +G KLG +G+ +   F +        ++ L++  L    L+       +  K   + 
Sbjct: 421 LTEMGRKLGVVGDEQWDAFCRKRDAVEAEKARLQATWLHPSKLADPAALARVLGKPIERE 480

Query: 502 RTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
            T  + L  P+   + L         A + +  V E+++I+  Y  Y  RQ  E      
Sbjct: 481 YTLQDLLKRPNVPYRELMTVPEAADGAPELADEVAEQVEIQVKYQGYINRQNEELARRDN 540

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            E   +P D DY  +  LS E+++KL+  +P  L QAS+I+G+TPAA+ LL++++++ 
Sbjct: 541 LEDIRLPGDIDYGLVKGLSKEVQQKLNQQRPETLGQASRIQGITPAAVALLMVHLRRG 598


>gi|311087494|gb|ADP67573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 628

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/625 (45%), Positives = 393/625 (62%), Gaps = 6/625 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV
Sbjct: 1   MFNLRNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDAL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +
Sbjct: 61  KEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +
Sbjct: 121 LEAEVKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QI 238
             L     +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   +  QI
Sbjct: 181 IDLSVRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPE
Sbjct: 241 PCYLTHTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K
Sbjct: 301 GLSSIKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++
Sbjct: 361 LIKGLFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + L
Sbjct: 421 GTEEPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K   ++  +  +  +         K  +  E L  P    Q+L S+            I 
Sbjct: 481 KKNKISPISPDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIG 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++ E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ Q
Sbjct: 541 QIENEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNNYKPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA+++LLI++KK + K
Sbjct: 601 ASRISGVTPAAISILLIHLKKESYK 625


>gi|219681390|ref|YP_002467775.1| glucose-inhibited division protein A [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471063|ref|ZP_05635062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254811506|sp|B8D8G6|MNMG_BUCA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219624233|gb|ACL30388.1| glucose-inhibited division protein A [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 628

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/625 (45%), Positives = 393/625 (62%), Gaps = 6/625 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV
Sbjct: 1   MFNLRNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDAL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +
Sbjct: 61  KEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +
Sbjct: 121 LEAEVKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QI 238
             L     +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   +  QI
Sbjct: 181 IDLSVRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPE
Sbjct: 241 PCYLTHTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K
Sbjct: 301 GLSSIKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++
Sbjct: 361 LIKGLFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + L
Sbjct: 421 GTEEPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K   ++  +  +  +         K  +  E L  P    Q+L S+            I 
Sbjct: 481 KKNKISPISPDADILKKLYNISLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIG 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++ E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ Q
Sbjct: 541 QIENEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA+++LLI++KK + K
Sbjct: 601 ASRISGITPAAISILLIHLKKESYK 625


>gi|160872528|ref|ZP_02062660.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsiella grylli]
 gi|159121327|gb|EDP46665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsiella grylli]
          Length = 621

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/620 (46%), Positives = 397/620 (64%), Gaps = 7/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDVI++GGGHAG EAA  AA++GAST L+TH   T+G +SCNP+IGG+GK HLV+E
Sbjct: 3   FSTKYDVIIVGGGHAGTEAALAAARVGASTLLLTHNIETLGQLSCNPSIGGIGKSHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M + AD AGIQ+R LN  KGPAVR  R Q DR LY+ A++  + +Q NL + Q
Sbjct: 63  VDALGGIMAQAADLAGIQWRTLNASKGPAVRATRAQMDRNLYKQAIRNALENQANLFIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + + I  +V Q        +VVLT GTFL G IHIG  +   GR G+  +N+
Sbjct: 123 QSVDNIILQSDRIVGVVTQMGLQFYAQSVVLTAGTFLAGKIHIGLQQANGGRAGEPAANT 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L     +  F   RLKTGTP RLDG+TI +    +Q +D  L  FS + + K    Q  C
Sbjct: 183 LAEKLRQLPFRVKRLKTGTPPRLDGRTINYQVLVEQPSDTPLPVFSDLGNVKQHPEQRSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II   +  S +YSG I   GPRYCPSIEDK+VRF +++ HQIFLEPEGL
Sbjct: 243 FITYTNETTHTIIRHGLDRSPLYSGLIAGVGPRYCPSIEDKVVRFADKSAHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +YPNGIST+LP ++Q+  I +I GLE+ +I RPGYAIEYD+ +P++LFP+LE++ I
Sbjct: 303 DTHEIYPNGISTSLPFDVQYDLIHSIEGLEQAHITRPGYAIEYDFFDPRDLFPSLESRLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAAAQGL+AG+N+A K+ +       R+++Y+GV+IDDL ++G 
Sbjct: 363 ENLFCAGQVNGTTGYEEAAAQGLIAGLNAALKAQEKSMWYPRRSEAYMGVLIDDLITQGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYR+ LR DNAD RL+    KLG I E R K+           +  LK 
Sbjct: 423 LEPYRMFTSRAEYRLLLREDNADLRLSEAAYKLGLIDESRWKKMDDKRSILEQEQQRLKQ 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYE----FLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           +++      ST+I   Q G+T T +      L+ P+ +  +L +I           + ++
Sbjct: 483 ILIKPHTPLSTAIE-AQLGQTITRHYRLSELLTRPELNYSHLMNIEGLGPGVMDDAISKQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I++ Y  Y  RQ  E +     E   +P   DY+++  LSNE++EKL   +P  L QA
Sbjct: 542 IDIQAKYQGYIDRQCAEIQRQSRYENITLPLHLDYNAVKGLSNEVREKLIQCRPLTLGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPAA++LLL++IKK
Sbjct: 602 SRIPGITPAAISLLLVHIKK 621


>gi|219681946|ref|YP_002468330.1| glucose-inhibited division protein A [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254811507|sp|B8D6S0|MNMG_BUCAT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219621679|gb|ACL29835.1| glucose-inhibited division protein A [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086329|gb|ADP66410.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311086903|gb|ADP66983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 628

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/625 (45%), Positives = 393/625 (62%), Gaps = 6/625 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N R++DVIV+G GHAG EAA  ++++G  T L+T K S +G++SCNPAIGG+GK HLV
Sbjct: 1   MFNLRNFDVIVVGAGHAGTEAAMASSRMGCKTLLLTQKISDLGALSCNPAIGGIGKSHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +EIDAL G+M +  D +GIQFR+LN  KGPAVR  R QAD+ LY   +++ +  Q NL +
Sbjct: 61  KEIDALGGMMAKAIDYSGIQFRILNSSKGPAVRSTRAQADKILYHETVKKILKKQNNLLI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV     +   +  ++ Q+       +VVL  GTFL G IHIG     AGR+GD  +
Sbjct: 121 LEAEVKDLIFKNYSVVGVLTQNEINFYSRSVVLAAGTFLGGKIHIGLKSYSAGRIGDKSA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QI 238
             L     +      RLKTGTP R+D  T+ ++    Q +D  +  FSFM +   +  QI
Sbjct: 181 IDLSVRLRELSLRVNRLKTGTPPRIDINTVNFNNLLIQNSDTPVPVFSFMGNVSHHPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II +N+  S IY+G +K  GPRYCPSIEDKIVRF +R  HQ+FLEPE
Sbjct: 241 PCYLTHTNEKTHEIIRKNLDKSPIYTGFLKGLGPRYCPSIEDKIVRFPDRKSHQVFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  VYPNGIST+LP E+Q Q + +I GLEK  IIRPGYAIEYD+ +PK+L  TLE+K
Sbjct: 301 GLSSIKVYPNGISTSLPIEVQEQIVASIKGLEKSKIIRPGYAIEYDFFDPKDLNLTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAA+QGL+AG+N+A  S   +     R  +Y+GV+IDDLT++
Sbjct: 361 LIKGLFFAGQINGTTGYEEAASQGLLAGLNAALSSKNTEGWFPRRDQAYLGVLIDDLTTQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + + R  R+ + +       + L
Sbjct: 421 GTEEPYRMFTSRAEYRLSLREDNADLRLTEIGRKLGLVNDSRWIRYNQKVLNIQTEMNRL 480

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           K   ++  +  +  +         K  +  E L  P    Q+L S+            I 
Sbjct: 481 KKNKISPISPDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLESFRTGIVDLEAIG 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++ E  YA Y  RQ  E +     E   +    DY+ +  LS+E+ +KL+  KP ++ Q
Sbjct: 541 QIENEIKYAGYIKRQSEEIERHLKNENTFLSSICDYNKIRGLSSEVVKKLNDYKPISIGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA+++LLI++KK + K
Sbjct: 601 ASRISGITPAAISILLIHLKKESYK 625


>gi|328958784|ref|YP_004376170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Carnobacterium sp. 17-4]
 gi|328675108|gb|AEB31154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Carnobacterium sp. 17-4]
          Length = 631

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/619 (41%), Positives = 372/619 (60%), Gaps = 5/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  AA++G+ T LIT     +  M CNP+IGG  KG +VREIDA
Sbjct: 8   NFDVIVVGAGHAGSEAALAAARMGSHTLLITINLDMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+ +Y   M++ I   ENL + QG  
Sbjct: 68  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKFMYANEMKKTIEETENLVLRQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  I   I+    ++ R   V+LT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 DELIIEDGICKGIITNTGAIYRSKAVILTAGTSSRGQIIIGELKYSSGPNNSQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S ++  F+  R KTGTP R+   TI +  TE+Q  D++   FS+ T        Q+ C +
Sbjct: 188 SLLENGFELNRFKTGTPPRVKSSTIDYSVTEEQPGDKKANHFSYETPNSSYLKDQLSCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH+ I +N+  + +++G ++  G RYCPSIEDK+VRF ++  HQ+FLEPEG +T
Sbjct: 248 TYTNESTHQKIQDNLHRAPMFTGIVEGVGARYCPSIEDKVVRFSDKPRHQLFLEPEGRDT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L P+LETK +  
Sbjct: 308 EEVYVQGLSTSLPEDVQQDIIHSIEGLENAEMMRTGYAIEYDVVTPHQLRPSLETKVVEN 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AG+N+A K    +     R++ YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGMNAALKVQGKEPFVMKRSEGYIGVMIDDLVTKGTNE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R   F     ++      L S+ 
Sbjct: 428 PYRLLTSRAEYRLLLRHDNADFRLTEIGHQIGLVTKERYDTFVAKKAQFEGEIDRLGSIR 487

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L       T ++            A +FL  P+ S Q+L +  P   +    V E+++I+
Sbjct: 488 LKPTAEIQTYLTENNQAPLKDGILAKDFLRRPEVSYQDLLAFVPRDYELPLAVEEQVEIQ 547

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +  ++K  E + IP++ DY+++  ++ E KEKL  ++P  + QAS+I 
Sbjct: 548 VKYEGYIAKASQKVDKLKRMENKRIPENIDYAAINGIATEAKEKLIKIQPETIAQASRIS 607

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++L++Y+++  +
Sbjct: 608 GVNPADISILMVYVEQGKI 626


>gi|94987388|ref|YP_595321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lawsonia intracellularis PHE/MN1-00]
 gi|205831526|sp|Q1MPS7|MNMG_LAWIP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94731637|emb|CAJ55000.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 622

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/617 (45%), Positives = 371/617 (60%), Gaps = 3/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++D IV+GGGHAGCEA+   A+LG    LIT     IG +SCNPA+GG+ KGH+VRE
Sbjct: 1   MRTTFDCIVVGGGHAGCEASMALARLGQKVLLITGNVDRIGHLSCNPAVGGIAKGHIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG  AD AGIQFR LN  KGPAVR  R Q DR+LY  A++++I SQ NL V Q
Sbjct: 61  IDALGGMMGLWADKAGIQFRTLNRSKGPAVRATRAQVDRDLYMQAVKQDIFSQPNLSVWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +      +      +     V+LTTGTFL G++HIG+     GR+GD  ++ 
Sbjct: 121 DTVEAIIVKDGHTGGVKTALGQLFNSQYVILTTGTFLSGLMHIGQKNFSGGRLGDVGTSK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S        GRLKTGT  RL   +I +   E Q  D  +  FSF   K +  Q+ C 
Sbjct: 181 LSSSLHSIGLHLGRLKTGTTPRLLKTSIDFTSMEMQLGDTPIPSFSFHGPKPSQPQVPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH +I   +  S +++G I   G RYCPSIEDK+ RF +R+ HQIF+EPEGL 
Sbjct: 241 ITWTNEYTHDVIRSGMDRSPMFTGVITGTGARYCPSIEDKVARFADRDRHQIFVEPEGLT 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +   Y NGIST+LP +IQ   I TIPGLE  +++RPGYAIEYDY++P +L PTLETK + 
Sbjct: 301 SQECYINGISTSLPLDIQLALIATIPGLENAHMVRPGYAIEYDYVDPMQLHPTLETKVLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGT+GYEEAA QGL A +N   K  + +     R ++Y+ V++DDL ++G  
Sbjct: 361 GLWLAGQINGTSGYEEAAGQGLWAALNVFCKITRQEPFILGRDNAYLAVLVDDLVTQGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR  NAD RLTP+G K+G +G+ +   F K I + + L + L+++
Sbjct: 421 EPYRMFTSRAEYRLLLREANADIRLTPLGRKIGLVGDYQWNLFQKKISDIDTLVNRLQNI 480

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +    L       +      +  T  E L  P  + Q L  I  D    S  V    + 
Sbjct: 481 RIKPDTLDPSIFLELGESIPNRAYTLEELLKRPSITFQTLRKIYSDLPITSEDVYLETET 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              YA Y  RQ    +     E   +PK+ DY+ +  LS+E+ EKL I++P  L QA +I
Sbjct: 541 IIKYAGYLDRQEELVQRSAKLEHSYLPKEIDYTKVAGLSSEVIEKLQIVRPQTLGQAGRI 600

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPAA+  L IY+KK
Sbjct: 601 SGVTPAAITCLEIYLKK 617


>gi|325678157|ref|ZP_08157787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus albus 8]
 gi|324110162|gb|EGC04348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus albus 8]
          Length = 617

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/616 (42%), Positives = 372/616 (60%), Gaps = 5/616 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++D+IVIG GHAGCEAA   A+LG  TAL T     + +M CNP+IGG  KGHLVREID
Sbjct: 2   ENFDIIVIGAGHAGCEAALAGARLGLKTALFTITLDGLANMPCNPSIGGTAKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR AD   IQ R+LN  KGPAV   R Q DR  Y   M++ I   + L + Q E
Sbjct: 62  ALGGEMGRAADKTLIQSRMLNRGKGPAVHSLRAQIDRVAYHNLMKKTIEGTDGLYLKQAE 121

Query: 124 VAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           +     E     +  +         C  V++ +GT+L G IH+G    P+G     P+  
Sbjct: 122 ITDLLFEEDGRTVRGVRTHLGVEYGCRAVIIASGTYLNGEIHVGVNTYPSGPDSVLPARK 181

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S  +      R KTGTPAR+  ++I +DK E Q  DE + PFSF  + +   +++C 
Sbjct: 182 LSDSLKEAGMTLRRFKTGTPARVHRRSIDFDKLEVQHGDEDIQPFSFTNEVLPENKVDCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  TN ETH++IM+NI  S IYSG I + GPRYCPSIEDKI+RF ++  HQ+F+EP GL+
Sbjct: 242 VAYTNAETHKVIMDNIHLSPIYSGRIHAIGPRYCPSIEDKIMRFSDKPRHQLFIEPMGLD 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD  Y  G+S++LP ++Q +F+RTI GLE V I+R  YAIEYD  +P +L PTLE K+  
Sbjct: 302 TDEFYLQGMSSSLPVDVQLKFLRTIEGLEHVEIMRNAYAIEYDCCDPTDLLPTLEFKEFH 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           G++ AGQ NGT+GYEEAAAQGLVAGIN+A K      +   R  SYIG +IDDL +KGV 
Sbjct: 362 GVYGAGQFNGTSGYEEAAAQGLVAGINAALKLKGEKPMVLDRASSYIGTLIDDLCTKGVS 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRM TSR+EYR+ LR DNAD RLT  G ++G IG+ R   F K  ++ +     + ++
Sbjct: 422 DPYRMLTSRSEYRLLLRQDNADLRLTETGHRVGLIGDERYNAFVKKKEQIDAEIKRVSAI 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +    + +  +  +        +   + +  P  S + L  I P+  +    V E++++
Sbjct: 482 NIAPSEVLNEYLVSQGTDPINNGFKLTQLIRRPQLSYKGLAFIDPERPELPEDVCEQVEL 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y   Q+ + + ++  E +LIP D DYS + +L  E  EKL+ ++P ++ QAS+I
Sbjct: 542 MIKYEGYIKIQLEQVEAMRKLESKLIPADIDYSKIGSLRLEAAEKLAKIRPLSVGQASRI 601

Query: 599 EGMTPAALNLLLIYIK 614
            G+ PA +N+LL+Y+ 
Sbjct: 602 SGVNPADINVLLVYLH 617


>gi|84514917|ref|ZP_01002280.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
 gi|84511076|gb|EAQ07530.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
          Length = 623

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/618 (52%), Positives = 426/618 (68%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIVIGGGHAG EAA  AA++GA T L+T    +IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHYDYDVIVIGGGHAGSEAAHAAARMGARTVLVTLTRRSIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG MG+VAD AGIQFR+LN KKGPAV+GPR Q DR +YR  MQ  + +Q NL ++
Sbjct: 61  EIDALDGAMGQVADRAGIQFRLLNRKKGPAVQGPRAQTDRAIYRDTMQAVLAAQPNLTIL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE      + + ++ I ++D  M+    V+LTTGTFLRGVIHIG++  P GRMGD PS 
Sbjct: 121 EGEATDLVMDGDRVAGIYLRDGQMVTSKNVILTTGTFLRGVIHIGEVSRPGGRMGDDPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +      F    GRLKTGTP RLDG+TI WD  E Q +D+  + FSF++  +  +Q+ C
Sbjct: 181 HMAERLDGFGLPMGRLKTGTPPRLDGRTIRWDILESQPSDDDPVLFSFLSKSVFAQQVNC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II  N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 241 GITHTNEQTHDIIRANLGRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +YPNGIST+LPE++Q  ++R+I GLE   I++PGYAIEYDY++P+ L PTLE + +
Sbjct: 301 NDHTIYPNGISTSLPEDVQLDYVRSIHGLENATILQPGYAIEYDYVDPRALRPTLELRDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLV+G+N+A  +   + + FSR +SYIGVMIDDL ++GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGLVSGLNAAAAALDKEPVLFSRRESYIGVMIDDLITRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT  G  +GCI E R   F+  + +    +S L  
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADQRLTARGRAIGCISELRWSVFSAKMDKITDAKSRLGK 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + L+++++++       DG  +TA E L+  DF    L  I P+    +  + E+++ ++
Sbjct: 481 IYLSARDITAAGAQLNPDGPRKTALEALALADFGFAQLMQISPETSDIAPEIQEQVKKDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +   ++ +E +LIP   DY  +  LS EL  KL   +P ++ QA +IEG
Sbjct: 541 LYAHYILRQERDVSALERDEAQLIPDGLDYLGVRGLSTELVTKLQKTRPVSIAQAGRIEG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAAL LL+  IK++ +
Sbjct: 601 MTPAALMLLIGAIKRHAL 618


>gi|291278440|ref|YP_003495275.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
 gi|290753142|dbj|BAI79519.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
          Length = 623

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 381/623 (61%), Gaps = 6/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +++YDVIV+G GHAGCEAA  AA++GA T LIT    TI  MSCNPAIGGL KG++V+
Sbjct: 4   IYDKTYDVIVVGAGHAGCEAALAAARMGAKTLLITIYVETIAQMSCNPAIGGLAKGNIVK 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           ++DAL G M +  D  GIQF+VLN KKGPAVR  R QAD++LYR  M   ++ QENLDV 
Sbjct: 64  DLDALGGEMAKNIDETGIQFKVLNKKKGPAVRSSRAQADKKLYRERMISVLMDQENLDVK 123

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     E +I+  +V+      +   V+LTTGTFL G+IHIG  + PAGR  +  S 
Sbjct: 124 QGVVTDIVVENDIVKGVVVDYGLYFKSDKVILTTGTFLNGLIHIGDKRYPAGRANEFASV 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  ++ F   RLKTGTPARLD  TI +   E+Q  D     FSF +      Q+ C
Sbjct: 184 DLAEALKRY-FPLERLKTGTPARLDADTINFSVLEEQPGDNEPKMFSFESKGPKLPQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II EN+  S +Y+G IK  GPRYCPSIEDK+ +F +++ HQIFLEPEGL
Sbjct: 243 YITYTNEKTHSIINENMHRSPLYAGVIKGIGPRYCPSIEDKVKKFPDKSRHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +Y NG S++LP ++Q    R++ GLE V  +RP YAIEYD++ P  L+PTLETKKI
Sbjct: 303 DSREIYANGFSSSLPIDVQIAMYRSVKGLENVEFVRPAYAIEYDFVQPTNLYPTLETKKI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAA QG VA +N+    +  +     R +SYIGVMIDDL +KGV
Sbjct: 363 KGLYFAGQINGTTGYEEAAGQGFVAAVNAVLSYDNKE-FILGRDESYIGVMIDDLVTKGV 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+F SR+EYR+ LR DNA+ RL   G  LG I + R +RF +  + +      L  
Sbjct: 422 DEPYRVFHSRSEYRLLLREDNAEFRLISKGYDLGLIRKSRYERFLREKEMFEKEMKRLDE 481

Query: 481 LVLTSKNLSSTSISF--KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           + +     +   +S    +     +  E L  P+ S + +             V E+++I
Sbjct: 482 IKVNPDKHNQDKLSKYNIKINNPVSLKELLRRPEVSYEIIKEFWGGVEN--ERVAEQIEI 539

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +QM E +  +  E   IP   D+S +  L  E  EK   +KP  L QAS+I
Sbjct: 540 SVKYEGYIAKQMQEVERFRKIENVRIPDTLDFSKIKGLRREFIEKFERIKPKTLGQASRI 599

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G+TPAA++LL IYI+    K N
Sbjct: 600 PGVTPAAISLLHIYIEDEKRKRN 622


>gi|219871649|ref|YP_002476024.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis SH0165]
 gi|219691853|gb|ACL33076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus parasuis SH0165]
          Length = 603

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/597 (46%), Positives = 368/597 (61%), Gaps = 5/597 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GKGHLV+EIDA+ GLM    D AGIQFR LN  
Sbjct: 1   MGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAMGGLMATATDKAGIQFRTLNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LYR A++  + +Q NLD+ Q EV     E N     V +     +
Sbjct: 61  KGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFK 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +V+LT GTFL G IHIG      GR GD  +  L +     +    RLKTGTP RLD 
Sbjct: 121 AKSVILTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +TI +D   KQ  D+ L   SFM   +   RQI C IT TN +TH +I  ++  S +Y+G
Sbjct: 181 RTINFDVLAKQHGDDVLPVMSFMGSVEQHPRQIPCYITHTNEQTHDLIRNSLDRSPMYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL T  VYPNGIST+LP ++Q   + +
Sbjct: 241 IIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGLTTIEVYPNGISTSLPFDVQIGIVNS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           + GLE   II+PGYAIEYDY +P++L PTLETK I GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 301 MKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+  +    +    +R  +Y GV++DDL + G  EPYR+FTSRAEYR+ LR DNAD R
Sbjct: 361 GINAGLQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADAR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG---KTR 502
           LTPI  + G I E R  RF + ++     ++ LK      +  +   ++   +    +  
Sbjct: 421 LTPIAHQFGLIDEARWMRFNEKMENIEKEKARLKQTWAHLQMANLVEVNALLNSPLAREA 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           +  + +  P+ + + L  I P A         E+++I   Y  Y   Q  E +  K  E 
Sbjct: 481 SGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQVEISIKYQGYIEHQQQEIERHKRHEN 540

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             IP +FDY  + +LSNE++ KL   +P ++ QAS+I G+TPAA+++LL+ +KK  +
Sbjct: 541 TQIPAEFDYDKVESLSNEVRAKLIQHRPVSIGQASRISGITPAAISILLVNLKKQGM 597


>gi|315925603|ref|ZP_07921813.1| glucose inhibited division protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621144|gb|EFV01115.1| glucose inhibited division protein A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 624

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/618 (42%), Positives = 373/618 (60%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IVIG GHAGCEAA   A++G  T L+     ++  M CNP+IGG GKGHLVREIDA
Sbjct: 7   HYDTIVIGAGHAGCEAALATARMGKETLLLAINLDSVAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV   R QAD++ Y+  M+  + + E+L + Q E 
Sbjct: 67  LGGEMGKNIDATMIQCRMLNTGKGPAVHSLRAQADKKAYQFRMKAVVENTEHLTLRQQEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  + +   +   C T V+ TGT+L+G I +G+++   G  G  P+  L +
Sbjct: 127 TKLIVEDQKIVGVQVVTGATYTCETCVVCTGTYLKGKIFMGEVQYEGGPNGMFPARFLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +  F   R KTGTPAR+D KT+ + K   Q  DE + PFSF T+ I   QI+C +T 
Sbjct: 187 SLEEAGFHLQRFKTGTPARVDAKTLDYTKMIVQKGDEIITPFSFETEAIAIDQIDCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  THRII  N+  S + +GD+   GPRYCPSIE K++RF +++ HQ+F+EPEG NT  
Sbjct: 247 TNEATHRIINANLDRSPLVTGDVVGVGPRYCPSIETKVMRFADKDHHQMFMEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+S+ LPE++Q    RT+PG+E V  +R  YAIEYD I+P EL  TLE+K+I GLF
Sbjct: 307 VYVQGMSSCLPEDVQIALYRTVPGMEHVAFMRSAYAIEYDCIHPTELKATLESKRIRGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEA AQG+VAGIN+A   ++ + +   R+ +YIGV+IDD+ ++   EPY
Sbjct: 367 FAGQINGTSGYEEAGAQGIVAGINAALLLDRKEPMILDRSQAYIGVLIDDIINEDASEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLTPIG ++G I E R +RF +           +  + + 
Sbjct: 427 RMMTSRAEYRLLLRQDNADLRLTPIGHRVGLISEERYQRFLQKKTAIADEVDRMGCVTVP 486

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   LS    +  + G      + +  P+ +  N  ++ P      + V E ++I+
Sbjct: 487 PSESANAILSRLGTTVLKSG--MPLGQLMKRPEINYANTAALDPQRPALPNNVCEEVEIQ 544

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q+ + ++ K  E + IP+   Y  +  L  E  EKL+ ++P +L QAS+I 
Sbjct: 545 LKYEGYISKQIKQVEQFKKLESKRIPEGLHYHHIEGLRLEAAEKLNAVQPMSLGQASRIS 604

Query: 600 GMTPAALNLLLIYIKKNT 617
           G++PA + +L +Y++ + 
Sbjct: 605 GVSPADIAVLHVYLENHR 622


>gi|268610511|ref|ZP_06144238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcus flavefaciens FD-1]
          Length = 629

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/622 (42%), Positives = 375/622 (60%), Gaps = 6/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV V+G GHAG EAA  AA+LG  T + T     I +M CNP+IGG  KGHLVREIDA
Sbjct: 7   EFDVAVVGAGHAGVEAALAAARLGCRTVMFTISLDQIANMPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ AD   IQ R+LN  KGPAV   R QADR  Y   M+     QENL V Q +V
Sbjct: 67  LGGEMGKGADECFIQSRMLNRGKGPAVHSLRVQADRVKYHNYMKNVCEKQENLYVKQADV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    E   I  +            V++ TGT+L+G IHIG++   +G     PS  L +
Sbjct: 127 AEVICENGKIIGVRTSLGVEYSVKAVIIATGTYLKGKIHIGEVSYESGPDSALPSVRLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGIT 243
           S      +  R KTGTP R++ ++I +D  E+Q  D++++PFSF T       Q+ C +T
Sbjct: 187 SLRAAGVELRRFKTGTPCRVNKRSIDFDVMERQDGDDKIVPFSFETPVDGLENQVSCYVT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I+ N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+T+
Sbjct: 247 YTNSNTHEVILSNLDRSPLYSGRIEGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLSTE 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q  F+RTI GLE V I+RP YAIEYD  +P +L PTLE KKI GL
Sbjct: 307 EYYLQGMSSSLPEDVQLAFLRTITGLEHVEIMRPAYAIEYDCCDPLQLLPTLEFKKIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NG++GYEEAAAQG+VAGIN+A K    + +   R  SYIG ++DDL +KG  +P
Sbjct: 367 YGAGQFNGSSGYEEAAAQGIVAGINAALKIKGEEPMILDRASSYIGTLVDDLVTKGCSDP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTPIG K+G I + R ++    I+  +     +KS  +
Sbjct: 427 YRMMTSRSEYRLILRQDNADQRLTPIGHKIGLISDERYRKLLSKIKLVDDEIKRVKSTNI 486

Query: 484 TSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +     N    SI            + +  P    ++L             V E+++++ 
Sbjct: 487 SPNSELNAFLESIGTSAMTTGCKLADLIRRPQVKYEDLAKYDVSRETLPDDVCEQVELQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ +  +++  E + +PK+ DYS +  L  E  EKL+ ++P ++ QAS+I G
Sbjct: 547 KYEGYISKQLEQIDQVRKLEDKKLPKNTDYSQIRGLRLEAAEKLNKIQPLSIGQASRISG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++L++++  +T+K  E
Sbjct: 607 VSPADVSMLVVWL--HTMKEGE 626


>gi|325846380|ref|ZP_08169349.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481564|gb|EGC84604.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 632

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/619 (42%), Positives = 372/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ SYDV+VIG GHAGCEAA   A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 8   IDESYDVVVIGAGHAGCEAALSIARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 67

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + SQENLD+ +
Sbjct: 68  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLESQENLDLFE 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + S+     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 128 QEVDKINVEDGRVKSVETVQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 187

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L +S     F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+ +       +Q 
Sbjct: 188 LSDSLEDLGFTLRRFKTGTPARVDRKSLDLTKTEIQKGDENIVAFSFLNEGKDFSDKKQE 247

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN++ S +Y G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 248 ACYLTYTTEKTKEIIMENLERSPMYGGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 307

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 308 SLSTDEMYVQGVSSTLPQEVQKEFYKTIEGLEDCKIIRPAYGIEYDCLDSTNLKRSLESK 367

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGLVAGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 368 EIENLFFAGQINGSSGYEEAAGQGLVAGINAALKLRGDDPLILDRSDAYIGVLIDDLVTK 427

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSR EYR+++R DNAD RLT    ++G + + R ++  +  +      + L
Sbjct: 428 GTNEPYRMMTSRCEYRLTMRQDNADLRLTEKAHEIGLVTDERYQKMIEKRKNIEDEINRL 487

Query: 479 KSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           + +++     ++     I         + ++ +  P+ + + L  + PD          +
Sbjct: 488 QKVMVGPSQENNKIMEEIGSSPLKTGYSLFDLIKRPELTYEKLEILDPDRPSLPKFQQIQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DY+ +  L  E  EKL+ +KP ++ QA
Sbjct: 548 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDTDYTKIKGLKKESAEKLNKIKPDSIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 608 SRISGVSPADINVLLIRLK 626


>gi|309390344|gb|ADO78224.1| glucose inhibited division protein A [Halanaerobium praevalens DSM
           2228]
          Length = 632

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/624 (41%), Positives = 375/624 (60%), Gaps = 6/624 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEA+   A++G  T  +T     +  M CNP++GG GK H+VREID
Sbjct: 8   KEYDVIVIGSGHAGCEASLAPARMGLKTLTLTVSLDHVAFMPCNPSLGGPGKSHIVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  D   IQ R+LN  KGPAV G R Q+D++ Y   M+R +  ++NLD+ Q  
Sbjct: 68  ALGGEMAKNMDQTMIQIRMLNTSKGPAVHGLRGQSDKDKYHKRMKRVLEQEDNLDLKQQI 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   +  +V +         V+LTTGTFL+G + IG+ +  AG     P+N L 
Sbjct: 128 AEKIIVEAGEVKGVVTKTGVFFAGKKVILTTGTFLKGRMIIGEAEFNAGPNQQYPANKLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S      +  R KTGTP R+  K++ + K E Q   E  + FS+ ++ +   Q  C +T
Sbjct: 188 GSLKDLGINLRRFKTGTPPRVSKKSMDFSKMEPQPG-EAGLSFSYESEPLKGEQAMCYLT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+  TH+II +N   + ++SG I   GPRYCPSIEDK+VRF ++  HQ+F+EPEGL+TD
Sbjct: 247 YTSAATHKIINDNKMRTPLFSGVIDGVGPRYCPSIEDKVVRFPDKGRHQLFIEPEGLDTD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y +G+ST+LP ++Q +  RTI GLE V I+RPGYAIEYD ++P+EL   LE KK+ GL
Sbjct: 307 EYYVSGLSTSLPYDVQIKMARTIKGLENVEIMRPGYAIEYDCVDPEELKLDLELKKVKGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAA QGLVAGIN+A      D +   R+++YIGV+IDDL +KG  EP
Sbjct: 367 YTAGQINGSSGYEEAAGQGLVAGINAALSLQGKDPLILKRSEAYIGVLIDDLVTKGTPEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL--KSL 481
           YR+ TSRAEYR+ LR DNAD RLTPIG K+G + E+R K +   ++      S L  +  
Sbjct: 427 YRIMTSRAEYRLLLRQDNADQRLTPIGKKIGLVSEQRYKNYQAKMKAVKKAFSYLRDEQN 486

Query: 482 VLTSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +         +     G   K  +  + L  P+ S  +L     +  +    V E+++I
Sbjct: 487 QVNPTKEVRAKLEELGSGNLSKPVSLEKLLRRPEISYSDLKYFADNLPEIKKDVQEQVEI 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  + ++ +  E++ IP+  DY+ L  L  E +EKL+ +KP ++ QAS+I
Sbjct: 547 QVKYKGYMARQEAQVEQFRKMEEKKIPRSLDYNKLENLRLEAREKLAKIKPLSIGQASRI 606

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++PA ++ L+IY+++      E
Sbjct: 607 SGVSPADISALMIYLEQYNRNKGE 630


>gi|254472179|ref|ZP_05085579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudovibrio sp. JE062]
 gi|211958462|gb|EEA93662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pseudovibrio sp. JE062]
          Length = 627

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/586 (56%), Positives = 434/586 (74%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TALITH+  TIG MSCNPAIGGLGKGHLVREIDALDGLMGRVADA+GIQFR+LN +KGP
Sbjct: 33  HTALITHRFDTIGVMSCNPAIGGLGKGHLVREIDALDGLMGRVADASGIQFRMLNRRKGP 92

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AV+GPR+QADR+LYR AMQ EI +  NL+V++GE      E +I+  IV+ D   +    
Sbjct: 93  AVQGPRSQADRKLYREAMQAEIKAIANLEVVEGEADKLIREGDILKGIVLGDGRQVSAKA 152

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VV+TTGTFLRG+IHIG  +IPAGR G++P+  L  S  +     GRLKTGTPARLDG+TI
Sbjct: 153 VVITTGTFLRGLIHIGDKQIPAGRDGEAPALGLSVSLEEIGLRLGRLKTGTPARLDGRTI 212

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            WD  ++Q  DE  IPFS +TD+I  RQ+ C ITRT  ETH+II +NIK SA+YSG+IK 
Sbjct: 213 NWDILQQQPGDEEPIPFSTLTDEIQIRQVPCYITRTTPETHKIIRDNIKRSAMYSGEIKG 272

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDKIVRFG+R+GHQ+FLEPEGL    VYPNGIST+LPE++Q +F+RTIPGL
Sbjct: 273 RGPRYCPSIEDKIVRFGDRDGHQVFLEPEGLGDPTVYPNGISTSLPEDVQIEFLRTIPGL 332

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           EKV   +P YAIEYD+I+P EL  TLE KK  GL+LAGQINGTTGYEEA AQGL+AG+N+
Sbjct: 333 EKVEYFKPAYAIEYDHIDPTELTNTLEVKKQKGLYLAGQINGTTGYEEAGAQGLLAGLNA 392

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +     +   R D YIGVM+DDL ++GV EPYRMFTSRAEYR++LR DNAD RLTP+
Sbjct: 393 ARTAQDGAPVTVGRADGYIGVMVDDLITRGVSEPYRMFTSRAEYRLTLRADNADQRLTPL 452

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G++ GCIG+ R+  F   +++    + L++S+ +T        +   QDG  R+A++ L+
Sbjct: 453 GIEWGCIGDTRRVAFETKMEKLRKTKDLMQSVKITPNEGRKKGLPINQDGVKRSAFDLLA 512

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           YP+ ++++L  I  + +     V E++ I++ YA Y  RQ  + + +K +E  +IP+  D
Sbjct: 513 YPNITLKDLMGIFDELKDLDLKVAEQVSIDAMYAVYLERQAADIEALKRDEDLVIPEWID 572

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           Y++L  LSNE+++KL  ++P  + QAS+++G+TPAAL LLL YI++
Sbjct: 573 YAALTGLSNEVRQKLEAVRPSTIGQASRMDGITPAALTLLLAYIRR 618


>gi|49474828|ref|YP_032870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella quintana str. Toulouse]
 gi|81170523|sp|Q6FYB9|MNMG_BARQU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49240332|emb|CAF26814.1| Glucose inhibited division protein a [Bartonella quintana str.
           Toulouse]
          Length = 622

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/621 (54%), Positives = 445/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV++IGGGHAGCEAA+ +A+ GA TAL+THK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QLYDVVIIGGGHAGCEAASASARSGACTALVTHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY+ A+Q+ +  Q+NL +I+ E
Sbjct: 62  ALDGLMGRAADIAGIQFRLLNRRKGPAVRGPRTQADRKLYKKAIQKFLQEQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + N +S +V++    +    VVLTTGTFL G+IHIG     AGRMG+  S  L 
Sbjct: 122 AVDLIVKDNCVSGVVLKKQGELFSGAVVLTTGTFLNGLIHIGDKTWAAGRMGEHSSVQLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               K+D + GRLKTGTPARL  KTI W+   KQ ADE  +PFS +T+KI   QIEC IT
Sbjct: 182 ERLKKYDINLGRLKTGTPARLSKKTINWNCLSKQKADEDPVPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG I+  GPRYCPS+EDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNTQTHQIIRENIHRSALYSGMIEGLGPRYCPSVEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPE++Q   +RTI GLE V I++PGYAIEYD++NP++L  TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEDVQVALLRTIEGLESVKILQPGYAIEYDFVNPQQLTKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   L+ I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLNEIIISRSTAYIGVMVDDLVSRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  + G + ++R   + +  Q  +  RS+ + L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADARLTPLAQQWGIVSQKRWDLYQQKQQRLDQARSICQKLFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+ L+YP  SI+ L       +      +E L+IE+ YA
Sbjct: 482 TPNQASAHGLQVNHDGIRRSAYDLLAYPHMSIERLSHFWQQLQSIDPKTVESLEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  +   ++ +E+  IP   D+ ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLEKQAQDISALQRDERLEIPSSLDFQTISGLSNELKTKIQKISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L++ YI++   +  E  
Sbjct: 602 AALSLIITYIQRQRREKAESA 622


>gi|290581400|ref|YP_003485792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mutans NN2025]
 gi|254998299|dbj|BAH88900.1| glucose inhibited division protein homolog [Streptococcus mutans
           NN2025]
          Length = 631

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 377/625 (60%), Gaps = 7/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTENYDVIVIGAGHAGVEASLATSRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D + IQ R+LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKSYIQMRMLNTGKGPAVRALRAQADKALYARNMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       V++TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDEILVEDGKVIGVRTATNQKYSAQAVIVTTGTALRGEIILGELKYSSGPNNSLASIT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I +D+TE Q  D++   FSFM+  +     QI 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKANSIHYDETEIQPGDKKPNHFSFMSKDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 245 CWLTYTNQSSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKDVVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF     +++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADLRLTEIGHQVGLVNEERYMRFQIRKNQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+ +     S   P A      VIE 
Sbjct: 485 SIKLKPVAEINKRIEELGFKPLTDALTAKEFMRRPEINYAIATSFVGPAAESLDEKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVK 619
           S+I G+ PA +++L++Y++ KN  +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSR 629


>gi|152991802|ref|YP_001357523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurovum sp. NBC37-1]
 gi|205831575|sp|A6Q6Q7|MNMG_SULNB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|151423663|dbj|BAF71166.1| glucose inhibited division protein A [Sulfurovum sp. NBC37-1]
          Length = 623

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/615 (45%), Positives = 379/615 (61%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVIGGGHAGIEASLASARMGVKTLLITILAEQIGASSCNPAIGGLAKGHLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFR LN  KGPAVRG R Q D + YR+ M+  +L+ ENLDV Q   
Sbjct: 62  LGGEMGLCTDATGIQFRTLNASKGPAVRGSRAQIDMDEYRIYMRNVVLNTENLDVKQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   E+  +  +  Q  +    S V++T GTFL G+IHIG  K  AGR G+  S  L  
Sbjct: 122 DGLIVEEGEVKGVTTQLGNRYTASKVIITAGTFLNGLIHIGDKKQTAGRQGEFASVELAE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
                  + GRLKTGT AR+D K++     E Q  D    PFSF TDK     +Q+ C +
Sbjct: 182 YLKGLGLNIGRLKTGTCARIDAKSVDTSVMEVQPGDTPPPPFSFRTDKSTFNPKQLPCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN  TH II  N   + ++SG I+  GPRYCPSIEDKI RF +R  HQIF+EP+ ++ 
Sbjct: 242 AYTNERTHEIIESNFYRAPMFSGQIEGVGPRYCPSIEDKINRFRDRPRHQIFVEPQTIDE 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG+ST+LP ++Q + +R++ G++   I+R GYAIEYDY++P EL  TLETKKI G
Sbjct: 302 TEYYINGMSTSLPIDVQLEMVRSVEGMKNAKIVRYGYAIEYDYVDPTELKHTLETKKIKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AGIN+A      + +   R ++YIGV+IDDL +KG  E
Sbjct: 362 LYTAGQINGTTGYEEAAAQGLMAGINAALSIQGKEALILRRDEAYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL+  G +LG + +    +F +  +      + L+   
Sbjct: 422 PYRMFTSRAEYRLLLREDNADMRLSKYGKELGLLDDAYIAKFEEKQKNIEEALNYLQENY 481

Query: 483 LTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +T          +I   +        + +   DF+   L S+ P+  K+   V+ ++ +E
Sbjct: 482 VTPTKEFLAKLEAIGAVKINDRTCWIDVIGRGDFNRDKLVSLLPEFDKYDDEVMGQILVE 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  +Q ++  ++K   K  IP+DF Y ++  LSNE+ EKL    P  L  AS+I 
Sbjct: 542 AKYSRYIEKQQMQIDQMKDMLKIKIPEDFTYKNVSGLSNEIVEKLEKANPTTLFAASEIS 601

Query: 600 GMTPAALNLLLIYIK 614
           G+TPAAL ++ +YIK
Sbjct: 602 GVTPAALEIIHVYIK 616


>gi|126724525|ref|ZP_01740368.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
 gi|126705689|gb|EBA04779.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
          Length = 625

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/618 (54%), Positives = 439/618 (71%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG +AA  AA++GA TAL+T    +IG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   DFDVIVIGGGHAGADAAHAAARMGAKTALLTLTKESIGVMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +DGLMGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  MQ E+ + ENL +I+GEV
Sbjct: 68  MDGLMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRKTMQAELAATENLSIIEGEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I+  V+ D + I    V+LTTGTFLRGVIHIG +  P GRMGD PS  L  
Sbjct: 128 IDLIQDGDRINGAVLGDGAEIWAKAVILTTGTFLRGVIHIGDVSRPGGRMGDKPSIKLAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
               F+   GRLKTGTP RLDG+TI WD  E Q  D+    FSF++  I+  Q+ CGI  
Sbjct: 188 RLDGFNLPLGRLKTGTPPRLDGRTINWDILETQPGDDDPTLFSFLSRSISAPQVNCGIAH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I EN++ SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPEG + + 
Sbjct: 248 TNEKTHDLIRENLERSAMYGGHIDGVGPRYCPSIEDKIVRFADKTSHQVFLEPEGADDNT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q+ ++ ++ GLE   I++PGYAIEYDYI+P+ L PTLE + + GL+
Sbjct: 308 VYPNGISTSLPEDVQYAYVNSMQGLENAVILQPGYAIEYDYIDPQALRPTLELESVPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A  +   + I F R  SYIGVMIDDL ++GV EPY
Sbjct: 368 LAGQINGTTGYEEAAAQGLVAGLNAAAFALGREPIYFDRAQSYIGVMIDDLVTRGVSEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+SLR DNAD RLTPIG+ LGC+GE R K F   +++ N  +  L  ++LT
Sbjct: 428 RMFTSRAEFRLSLRADNADQRLTPIGISLGCVGETRTKTFTNKLEKLNLTKFSLSEVILT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
              +    +  K+DG  R A+E LS+PD S + LF + P+     S + ++++ ++ Y  
Sbjct: 488 PNQIEPLGVKIKKDGVKRNAFELLSFPDISFETLFPVAPEFANIESEIRDQIERDALYHN 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  + + ++ +E   IP+DF+Y+ +  LSNELK KLS +KP  L QA +++GMTPA
Sbjct: 548 YIERQAKDVQAMRRDEAHKIPQDFNYAEVSGLSNELKSKLSHVKPRTLGQAGRVDGMTPA 607

Query: 605 ALNLLLIYIKKNTVKLNE 622
           AL LLL  I+++    + 
Sbjct: 608 ALTLLLTNIRRSAAVKSA 625


>gi|289664376|ref|ZP_06485957.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 634

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/623 (45%), Positives = 382/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   ++G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIESVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q        +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIRNGTSEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYSVMVEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G ++G +   R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGHEMGLVDNARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP  FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYAVVRGLSIEVRQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|225873934|ref|YP_002755393.1| glucose inhibited division protein A [Acidobacterium capsulatum
           ATCC 51196]
 gi|254811501|sp|C1FAF1|MNMG_ACIC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|225794576|gb|ACO34666.1| glucose inhibited division protein A [Acidobacterium capsulatum
           ATCC 51196]
          Length = 659

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/648 (45%), Positives = 398/648 (61%), Gaps = 29/648 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDV+V+G GHAGCEAA  AA++G  TAL T     I  MSCNPA+GG+ KGHLVRE+D
Sbjct: 5   EQYDVVVVGAGHAGCEAAMAAARMGLRTALFTLNLDLIAQMSCNPAVGGIAKGHLVREVD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG +ADA GIQFR+LN  +GPAV  PR Q D++ YR+ M+  + SQ NL + Q E
Sbjct: 65  ALGGIMGELADAVGIQFRLLNTSRGPAVWSPRAQCDKQQYRVKMREVLESQPNLYIKQAE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   ++ I ++D   IR    V+TTGTFL G+IH G+ +IPAGR G+ PS  L 
Sbjct: 125 AVDVVVEDARVTGIRLRDGRTIRAGATVITTGTFLNGLIHCGEERIPAGRSGEPPSVLLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  +      RLKTGTP RLDG+TI W + E+Q  D    PFSF T  +  RQI C I 
Sbjct: 185 ESLKQLGLRGCRLKTGTPPRLDGRTIDWARFEEQPGDADPTPFSFRTKTLPMRQISCHIA 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ET R+I EN+  S +YSG I++ GPRYCPSIEDK+V+F +++ HQ FLEPEGLNT 
Sbjct: 245 YTTPETLRLIRENVHRSPMYSGQIEAIGPRYCPSIEDKVVKFPDKDRHQFFLEPEGLNTH 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG+ST+LP E+Q++ +R+IPGLE   ++RPGYAIEYD I+P EL  +L  KK  GL
Sbjct: 305 EVYVNGMSTSLPMEVQYEIVRSIPGLENAEMLRPGYAIEYDAIDPTELDRSLRVKKFEGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAA QG++AGIN+A           +RT++Y G++IDDL SKG  EP
Sbjct: 365 YLAGQINGTSGYEEAACQGIMAGINAALSVRDDAPFTLNRTEAYTGILIDDLISKGTNEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP G +LG I +     +         L  LL +  +
Sbjct: 425 YRMFTSRAEFRLHLRIDNADRRLTPYGRRLGLIHDEAWADYEAKQARAVTLEKLLATRKI 484

Query: 484 T-----SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-------------------- 518
                 +  L+   I+       +T  + L  P+ SI+ L                    
Sbjct: 485 KDVTPLAPALAQAGITDAASLAGQTYAQLLKRPEMSIEALWTVIRAEVAEGEAASLFAPW 544

Query: 519 ----FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
                        F    ++ ++ E  YA Y  +Q    +++K  E R+IP+ FDY+S+ 
Sbjct: 545 FTNAEEASQPLPAFVRNELKSVETEIKYAGYLDQQRKSMEKLKKAETRVIPEWFDYASVS 604

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            LS E++EKL  ++P  + QAS+I G+TPAAL+L+ +YI+    +L +
Sbjct: 605 GLSREMQEKLVRVRPQTIGQASRIPGVTPAALSLINVYIEIQGKRLAK 652


>gi|184156314|ref|YP_001844654.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum IFO 3956]
 gi|227514111|ref|ZP_03944160.1| glucose-inhibited division protein A [Lactobacillus fermentum ATCC
           14931]
 gi|183227658|dbj|BAG28174.1| glucose inhibited division protein [Lactobacillus fermentum IFO
           3956]
 gi|227087482|gb|EEI22794.1| glucose-inhibited division protein A [Lactobacillus fermentum ATCC
           14931]
 gi|299783730|gb|ADJ41728.1| Glucose inhibited division protein A [Lactobacillus fermentum CECT
           5716]
          Length = 634

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 358/623 (57%), Gaps = 8/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 12  DYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGVVVREIDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  ++NL + QG V
Sbjct: 72  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKWTIEKEKNLTLRQGVV 131

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 132 DDLIVEDGTVKGVITNTGAAYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKAAVKLSE 191

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R+DG TI + KTE+Q  D+    FSF T          QI  
Sbjct: 192 ALERLGFDLQRFKTGTPPRVDGNTIDYSKTEEQPGDQTPNHFSFDTPDTSYIPVKDQISS 251

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH I+  N+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 252 WLTYTNPTTHEILRNNLDRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQVFLEPEGR 311

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQHQ I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 312 DTDEFYLDGLSTSMPEEIQHQMIHSVAGLEHAELMRPGYAIEYDVVAPYQLKATLETKLV 371

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + L+ AGQ NGT+GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 372 NNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 431

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R     +  Q      + LK 
Sbjct: 432 KEPYRLLTSRAEYRLILRHDNADLRLMEKGHAIGLVSDERLAAMEEKKQRVEDEIARLKD 491

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDAR-KFSSLVIERL 536
             +         +    D   + A     FL  P      L         +     +E++
Sbjct: 492 FRIKPGEEIDAFVVAHGDKPLKDAIAADAFLRRPYVDYPTLLKFVDAPAVELDRQEVEQV 551

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  ++  + + +K  E + IP D DY ++  L+ E ++KL  ++P  L QAS
Sbjct: 552 EIQLKYAGYIEKEEAKIERLKRMEAKRIPADIDYQAIEGLATEGRQKLEQIRPTTLAQAS 611

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA L +L +Y+++  +K
Sbjct: 612 RISGVNPADLAILSVYLRQGKLK 634


>gi|315039280|ref|YP_004032848.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1112]
 gi|325957754|ref|YP_004293166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus 30SC]
 gi|312277413|gb|ADQ60053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1112]
 gi|325334319|gb|ADZ08227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus acidophilus 30SC]
 gi|327184387|gb|AEA32834.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus amylovorus GRL 1118]
          Length = 632

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 358/620 (57%), Gaps = 5/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A +G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 7   SNEYDVIVVGAGHAGCEAALASAHMGQKTLLLTIGLDMVAFMPCNPSVGGPAKGTVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + Q 
Sbjct: 67  DALGGQMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENTPNLTLRQA 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++    +     +VVLTTGT  RG I IG+L   +G    +PS  L
Sbjct: 127 IVDEVVVEDGVCKGVITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNTTPSIKL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIEC 240
             +  K  F   R KTGTP R++G TI + KTE++  D+    FSF T        QI C
Sbjct: 187 SENLEKLGFKLRRFKTGTPPRVNGNTIDYSKTEEEPGDKTPRHFSFETKDADYLQHQISC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + +++G IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 247 WMTYTNPTTHEIIRNNLDRAPMFTGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGE 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY    ST++PEE+Q + + ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 307 TTKEVYVGDFSTSMPEEVQLKMVHSVAGLEHAEMMRPGYAIEYDVVEPWQLKHTLETKNV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R D+YIGV+IDDL +KG 
Sbjct: 367 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLGRNDAYIGVLIDDLVTKGT 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R KRF +  Q     +  L  
Sbjct: 427 NEPYRLLTSRAEYRLILRTDNADLRLTEYGHELGLISDERYKRFEEKKQAIKKAKERLHE 486

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   +       SI  +       A  FL  P+  I ++  +  +       V E+++
Sbjct: 487 ITVHLTDEVQDFLKSIGQEPMKAGVKADVFLRRPNVKIADIERLTGEKIPGDRYVKEQVE 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  ++      +K +E + IP D DY ++  L+ E ++K   ++P  L QA +
Sbjct: 547 IGIKYAGYIKKEETRIARLKRQEAKKIPADIDYEAIEGLATEARQKFEKIRPETLAQAER 606

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           I G+ PA L +L +YI+   
Sbjct: 607 ISGVNPADLAILSVYIQNGR 626


>gi|302380965|ref|ZP_07269426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311186|gb|EFK93206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ACS-171-V-Col3]
          Length = 627

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/621 (40%), Positives = 370/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E
Sbjct: 6   YENPYDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+
Sbjct: 66  VDALGGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIE 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  
Sbjct: 126 AEVVDIGVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKK 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S  K   +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  
Sbjct: 186 LSDSLKKLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEH 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+FLEPEG
Sbjct: 246 CYLTYTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFLEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +
Sbjct: 306 LSTKEMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLE 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LF AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG
Sbjct: 366 IKNLFFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LK
Sbjct: 426 TNEPYRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLK 485

Query: 480 SLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+++T    ++    ++   +     T  + +  P+ +         +  +    +  ++
Sbjct: 486 SIMVTPTEETNEKLRNLGSSELKTGITLLDLIKRPELTYDKTEEFDAERPELPRYLRLQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +    Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS
Sbjct: 546 ETHIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++P+ +N+LLIY++   
Sbjct: 606 RISGVSPSDINVLLIYMETRK 626


>gi|225028845|ref|ZP_03718037.1| hypothetical protein EUBHAL_03132 [Eubacterium hallii DSM 3353]
 gi|224953841|gb|EEG35050.1| hypothetical protein EUBHAL_03132 [Eubacterium hallii DSM 3353]
          Length = 627

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/614 (42%), Positives = 368/614 (59%), Gaps = 5/614 (0%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA+LG  T + T   +++  M CNP IGG  KGHLV+EIDAL G MG+
Sbjct: 14  GAGHAGCEAALAAARLGCETIIFTVSMNSVALMPCNPNIGGSSKGHLVKEIDALGGEMGK 73

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
             D   IQ ++LN  KGPAV   R QAD++ Y + M+  + + ++L + Q EV     E 
Sbjct: 74  NIDKTYIQSKMLNKSKGPAVHSLRAQADKDAYSMTMRYTLQNTDHLTLRQAEVTELIVED 133

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
            +I  +     ++    TVVL TGT+L+     G++    G  G   +N L  S      
Sbjct: 134 GVIKGVKTFSGAIYHAKTVVLATGTYLKARCLYGEVVNYTGPNGLQAANYLSQSLKDNGV 193

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLET 249
           +  R KTGTPAR+D +++ +D  E+QF DE+++PFSF    + I   QI C +T TN ET
Sbjct: 194 ELYRFKTGTPARIDKRSVNFDVMEEQFGDEKIVPFSFTNKEEDIKREQISCWLTYTNEET 253

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H+II +N+  S IY+G I+  GPRYCPSIEDK+VRF +R  HQ+F+EPEG  T+ +Y  G
Sbjct: 254 HKIIRDNLDRSPIYAGVIEGTGPRYCPSIEDKVVRFADRKRHQLFIEPEGEFTNEMYVGG 313

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           +S++LPE++Q+   RT+ GLE V IIR  YAIEYD INP +L  +LE + I GLF  GQ 
Sbjct: 314 MSSSLPEDVQYAMYRTVKGLENVKIIRNAYAIEYDCINPNQLKLSLEFRNIQGLFSGGQF 373

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NG++GYEEAA QGL+AGIN+ARK    D +   R+ +YIGV+IDDL +K   EPYRM TS
Sbjct: 374 NGSSGYEEAACQGLIAGINAARKCLGKDPVILDRSQAYIGVLIDDLVTKENHEPYRMMTS 433

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS 489
           RAEYR+ LR DNAD RLTPIG ++G I + R  +F    ++       LK + + +    
Sbjct: 434 RAEYRLLLRQDNADMRLTPIGHEIGLIDDERYDKFLLKKEQIEKEIERLKHVNIGANKTV 493

Query: 490 STSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYT 546
              +      K     T  E +  P+ + + L  I PD       V E++ I   Y  Y 
Sbjct: 494 QELLESLGSTKLNSGSTLEELIKRPELNYECLAPIDPDREPLDDDVAEQININIKYEGYI 553

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            RQ+ + ++ K  E +LIP   +Y  +  L  E  +KL  + P ++ QAS+I G++P+ +
Sbjct: 554 KRQLQQVEQFKKMENKLIPDTINYDEVHNLRTEAVQKLKAVHPHSVGQASRISGVSPSDI 613

Query: 607 NLLLIYIKKNTVKL 620
           ++L+IY+++   + 
Sbjct: 614 SVLMIYMEQMRHRK 627


>gi|254455349|ref|ZP_05068778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082351|gb|EDZ59777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 623

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/615 (52%), Positives = 427/615 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV++IGGGHAGCEAAA +A+LG +TAL THK  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   SFDVVIIGGGHAGCEAAAASARLGVNTALFTHKKETIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG VAD +GIQFR+LN  +GPAVRGPRTQ+DR LYR  MQ ++ +  NL++    V
Sbjct: 66  LDGVMGEVADKSGIQFRLLNRSRGPAVRGPRTQSDRSLYRKYMQEKLANYCNLNIFSDPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  +KN I+  + +    + CS ++LTTGTFL G+IHIG  + PAGR  + PS  L  
Sbjct: 126 IKFIFDKNTITGFMTKKGKKVLCSKLILTTGTFLNGLIHIGDERTPAGRYDEKPSTGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K++F  GRLKTGTP RLD +TI ++  E+QFAD+    FSF+T K  N+Q+ C +T 
Sbjct: 186 QLEKYNFKIGRLKTGTPPRLDSRTINYENLEEQFADDNPYFFSFLTKKNINKQVSCRMTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H+II +N+  SA+YSG I+  GPRYCPSIEDKIV+F ++  HQIFLEPEGLN   
Sbjct: 246 TNDKVHKIIEKNLSKSAMYSGSIQGVGPRYCPSIEDKIVKFADKGRHQIFLEPEGLNDHT 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q +    I GLE V+IIRPGYAIEYDYI+P+ELF TLE KKIS L+
Sbjct: 306 IYPNGISTSLPADVQQEICNNINGLENVSIIRPGYAIEYDYIDPRELFLTLEAKKISNLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A    KL+     R+D+YIGVMIDDL +KGV EPY
Sbjct: 366 LAGQINGTTGYEEAAAQGLIAGINAALSHKKLEPFILDRSDAYIGVMIDDLVTKGVAEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  GM++G IG+ R+  +     + N +   +    ++
Sbjct: 426 RMFTSRAEYRLSLRSDNADQRLTAKGMEIGLIGDVRKTLYLDKFDKINQINVKMGQSTIS 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   I   +DG  R++ E L+     +  +  I PD   FS  + E+++I + Y  
Sbjct: 486 PNKADQFGIKIAKDGILRSSNEILTQKGVDMNKIREIWPDIPYFSKEIDEQVEINAHYRG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    K +E  +IP   +Y  L  LSNE+K K   ++P  + QA +I+G+TPA
Sbjct: 546 YLKKQKADILAFKRDENLIIPDKINYDGLSGLSNEVKAKFKEIRPKTMGQALRIDGITPA 605

Query: 605 ALNLLLIYIKKNTVK 619
           A+ +LL ++K+ ++K
Sbjct: 606 AVYILLSHVKRKSIK 620


>gi|21241151|ref|NP_640733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24636868|sp|Q8PQE8|MNMG_XANAC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21106455|gb|AAM35269.1| glucose inhibited division protein A [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 634

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/623 (46%), Positives = 386/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q     +  +VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLIIHHGASEADSVRGVITQTGLRFQAPSVVLTAGTFLAGKIHVGQTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMAEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHEIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G    +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVAEIYPNGISTSLPFDVQLALVRSIHGFANAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RFA   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFAAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELTYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP  FDY+S+  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPDGFDYASVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|289547841|ref|YP_003472829.1| glucose inhibited division protein A [Thermocrinis albus DSM 14484]
 gi|289181458|gb|ADC88702.1| glucose inhibited division protein A [Thermocrinis albus DSM 14484]
          Length = 614

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/622 (46%), Positives = 390/622 (62%), Gaps = 17/622 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV+VIGGGHAG EAA  +A++GA TA+      TIG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVDEFDVVVIGGGHAGIEAALASARMGAKTAMFVLNADTIGQMSCNPAIGGVAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D  GIQF++LN +KG AV  PR QAD++ YR  M+R    QENL + 
Sbjct: 61  EIDALGGEMGKAIDTTGIQFKMLNTRKGKAVWSPRAQADKKRYREYMKRVCEQQENLYIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     E + + ++  +     +   VV+TTGTFL GVI+IG    PAGR  +  S 
Sbjct: 121 QDEVVDIVVENDRVVAVRTRLGLEYKTKAVVVTTGTFLNGVIYIGDKTFPAGRAWEPSSK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT------ 234
            L   + +  F   R KTGTPARLDG+TI +   E    D+    FSF T+ +       
Sbjct: 181 DLSQFYKRHGFPLLRFKTGTPARLDGRTIDYSVLEPAPGDDPPPKFSFWTEPMGSYWFPP 240

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F +++ HQ+
Sbjct: 241 GKEQVLCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFADKDRHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL+T  VYPNG+ST+LPEE+Q +  R+IPGLEKV +IRP YAIEYD + P EL+P
Sbjct: 301 FLEPEGLDTIEVYPNGLSTSLPEEVQWELYRSIPGLEKVELIRPAYAIEYDVVPPTELYP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKI GLF AG  NGTTGYEEAA QG++AGIN+A ++   + I   R +SYIG+M+D
Sbjct: 361 TLETKKIRGLFHAGNFNGTTGYEEAAGQGILAGINAALRAMGKEPIYLRRDESYIGIMVD 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLT+KGV EPYR+FTSR+EYR+ LR DNA  RL  IG  LG + E + +   +  +E   
Sbjct: 421 DLTTKGVTEPYRLFTSRSEYRLYLRQDNAILRLAHIGRNLGLLSEDQYRMVKELKEEIQR 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
                KS  +         ++   D +  T  + L+   +++++L     +       V 
Sbjct: 481 WIEFYKSARVV--------VAVGSDTRPYTPSQLLT-SQYTLEDLTRWGFEIPSHP-YVR 530

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++IE  Y  Y  R+    +++K  E  +IP+D DY  +P L+ E +EKL   +P  + 
Sbjct: 531 EEVEIELKYEPYIEREKKLNEKLKKLEDTVIPEDIDYDKVPGLTTEAREKLKKFRPITVG 590

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I+G+TPAA+  LL Y+ K
Sbjct: 591 QASRIDGITPAAITALLAYLGK 612


>gi|289209757|ref|YP_003461823.1| glucose inhibited division protein A [Thioalkalivibrio sp. K90mix]
 gi|288945388|gb|ADC73087.1| glucose inhibited division protein A [Thioalkalivibrio sp. K90mix]
          Length = 624

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/621 (46%), Positives = 384/621 (61%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIVIGGGHAG EAA  AA+ GA T L+TH   TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MAEEFDVIVIGGGHAGTEAALAAARAGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M R ADAAGI FR+LN +KGPAVR  R Q+DR+LYR A+++ + ++ NL + Q
Sbjct: 61  IDALGGVMARAADAAGIHFRILNRRKGPAVRATRAQSDRQLYRQAIRQFVEAEPNLQIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             VA    E + ++ +V +         VVLT GTFL G +H G  + P GR GD PS  
Sbjct: 121 QPVADITMEGDRVTGVVTEAGLAFTARAVVLTVGTFLNGQMHTGLTQQPGGRAGDPPSVR 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIEC 240
           L        F  GRLKTGTP R+DG+++ + + E Q  D+    FSF         Q  C
Sbjct: 181 LAARLRDMAFAVGRLKTGTPPRIDGRSVDFSRLEVQPGDDPRPVFSFTGSPGDHPEQRPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I RT+  TH +I  N+  + +YSG I S GPRYCPSIEDK+VRF ++  HQ+F+EPEGL
Sbjct: 241 HIARTSERTHDLIRANLDQAPMYSGQIDSTGPRYCPSIEDKVVRFADKTSHQVFVEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +YPNGIST+LP  IQ   +++I G E   I RPGYAIEYDY +P+ L P+L T+++
Sbjct: 301 TTHELYPNGISTSLPYAIQVPLVQSIEGFEHARITRPGYAIEYDYFDPRGLRPSLATREV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + LF AGQINGTTGYEEAAAQGLVAG+N+AR +   +     R+++YIGV+IDDL ++G 
Sbjct: 361 ANLFFAGQINGTTGYEEAAAQGLVAGLNAARLTRDAEPWIPQRSEAYIGVLIDDLVTRGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+G + G + + R  RF +         S L  
Sbjct: 421 QEPYRMFTSRAEYRLLLREDNADLRLTPVGREHGLVDDARWARFERRAAAIESEMSRLAQ 480

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERL 536
                      +   +  K      T  + L  P+     L    P+     +  V E+ 
Sbjct: 481 TRPDRDQRSRPALVELLGKAPEPDATLLDLLRRPEADYDALMQALPELDAGCTPDVREQA 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I++ YA Y  RQ  E       ++  +P + DY+ +  LSNE+++KL+  +P  L QA 
Sbjct: 541 EIQARYAGYIERQQAEVARQAKADQTALPDNLDYARVHGLSNEIRQKLAEFRPHTLGQAQ 600

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+TPAAL+ L +++K+  
Sbjct: 601 RIPGVTPAALSALAVHLKQRA 621


>gi|83953077|ref|ZP_00961799.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
 gi|83842045|gb|EAP81213.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
          Length = 620

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/619 (53%), Positives = 434/619 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA+TALIT     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGANTALITMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  M  E   QENL +++GE
Sbjct: 62  ALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRAIYRREMLAETERQENLTIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S  V+ D   I  + VVLTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 122 VTDFILDNGKVSGAVLADGEQISAAAVVLTTGTFLRGVIHIGDVSRSGGRMGDKASVDLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N    F+   GRLKTGTP RLDG+TI W+K E Q  D+  + FSF+++  +  QI CGIT
Sbjct: 182 NRIDSFNLPLGRLKTGTPPRLDGRTIDWEKLESQPGDDEPVLFSFLSETTSAPQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG +  
Sbjct: 242 HTNEETHQIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGADDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE++Q  ++R++ GLE V II+PGYAIEYDY++P+ L   L  + + GL
Sbjct: 302 TIYPNGISTSLPEDVQLAYVRSMVGLENVEIIQPGYAIEYDYVDPRALDLALSVRTVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR DSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVTFSRADSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ + LGC+ + R   F+  + + +   + L +   
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIALGCVSQERVAHFSAKMAKIDAAMAELTNTPY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            SK + +  I   QDG  RT ++ L++PD + + +  I P        +  +++ ++ YA
Sbjct: 482 ASKAIEAAGIKVSQDGTKRTGFQLLAFPDVTFEQIVLINPALDAVEPEIRRQVERDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E  +IP  FDY ++  LSNEL  KLS+++P NL QA++I+GMTP
Sbjct: 542 NYIARQQRDIDLLQKDEAHVIPASFDYEAIDGLSNELTSKLSLIRPTNLAQAARIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNE 622
           +AL LLL ++K+ + K + 
Sbjct: 602 SALTLLLSHLKRGSQKKSA 620


>gi|283797199|ref|ZP_06346352.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. M62/1]
 gi|291075160|gb|EFE12524.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. M62/1]
          Length = 641

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/628 (42%), Positives = 379/628 (60%), Gaps = 7/628 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+ V+G GHAGCEAA  AA+L   T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEETYDIAVVGAGHAGCEAALAAARLRMETVVFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG+  D   IQ ++LN  KGPAV   R QAD+E+Y   M+R + + E+L + Q
Sbjct: 64  LDALGGEMGKNIDKTFIQSKMLNQSKGPAVHSLRAQADKEMYTREMRRVLENTEHLTIKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E+  ++ I     ++  C  VVL TGT+LR     G +  P G  G   +N 
Sbjct: 124 AEVTEILAEEGRVTGIRTLSGAVYHCRAVVLATGTYLRARCIYGDVSNPTGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S      +  R KTGTPAR+D ++I + K E+QF D+R++PFSF TD   +   Q+ 
Sbjct: 184 LTDSLKALGIEMYRFKTGTPARVDRRSIDFSKMEEQFGDDRVVPFSFTTDPESVQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH II EN+  S ++SG I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 244 CWLTYTNERTHEIIRENLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKERHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++Q    RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQTAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLRATLEFKA 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF  GQ NG++GYEEAA QG +AG+N+ARK    + I   R+ +YIGV+IDDL +K 
Sbjct: 364 IEGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQGKEGIVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G I + R +R  +  Q+       L 
Sbjct: 424 SHEPYRMMTSRAEYRLLLRQDNADLRLSGIGHEIGLIDDERYERVLRKEQQIREEVERLN 483

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              + + +     +      +     T  E +  P+ S + +  I P        V E++
Sbjct: 484 RTPVGATHEVQECLKSYGSTELKTGSTLAELVRRPELSYEAVKEIDPKRPVLDWDVAEQV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I   Y  Y  RQ+ +  + K  E R + + FDYS++ +L  E  +KL++ KP N+ QAS
Sbjct: 544 NINIKYEGYIKRQLQQVAQFKKMESRKLDESFDYSTVKSLRKEAVQKLNLYKPRNIGQAS 603

Query: 597 KIEGMTPAALNLLLIYIK--KNTVKLNE 622
           +I G++PA +++LL++++  K   + NE
Sbjct: 604 RISGVSPADISVLLVHLEQLKYQRERNE 631


>gi|226315526|ref|YP_002775422.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevibacillus brevis NBRC 100599]
 gi|226098476|dbj|BAH46918.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Brevibacillus brevis NBRC 100599]
          Length = 632

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/622 (41%), Positives = 377/622 (60%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIVIG GHAG EAA  AA++G ST L+T     +  M CNP++GG  KGH+VRE+DA
Sbjct: 11  SFDVIVIGAGHAGAEAALAAARMGCSTLLLTINLDAVAYMPCNPSVGGPAKGHVVRELDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV   R QAD+  Y+  M++ I +  NL + Q  V
Sbjct: 71  LGGEMGRNTDKTHIQMRMLNTGKGPAVHALRAQADKFAYQHEMKKTIENTPNLILRQAMV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +   ++ Q  +     +VVLTTGT+LRG I +G L+  +G     PS  L +
Sbjct: 131 EELIVNDGVCEGVITQTGARYMAKSVVLTTGTYLRGKIILGDLQYESGPNNMRPSIRLAH 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   ++ + K E Q  D     FS+ T +    Q+ C +T 
Sbjct: 191 HLKELGFEMTRFKTGTPPRVHSSSVDFSKMEIQPGDPVPRAFSYETTEFIMDQLPCWLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH +I  N+  + +YSG I+  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT+ 
Sbjct: 251 TNEETHGLINSNLHRAPMYSGMIEGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTEE 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LPE++Q   +R++ G+E+V ++RPGYAIEYD I P +L+P+LETK + GLF
Sbjct: 311 MYVQGLSTSLPEDVQLSMLRSMAGMEEVKMMRPGYAIEYDSIVPTQLWPSLETKTLPGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+AR+      +   R ++YIGV+IDDL +KG  EPY
Sbjct: 371 TAGQINGTSGYEEAAGQGLMAGINAARRVQGKPPVILGRDEAYIGVLIDDLVTKGTHEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF +  +     +  + +  + 
Sbjct: 431 RLLTSRAEYRLLLRHDNADLRLTDIGHEIGLISEERYHRFNQKRELIEQEKERVANTRVR 490

Query: 485 SKNLSSTSISFKQDGKTRT----AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            +      +         T      + L  P+ +  ++  + P        V E+++I+ 
Sbjct: 491 PEMAHVQEVLRNAGSPELTDVIELAQLLRRPEINYSHIAQMVPAPEALPEDVTEQVEIQI 550

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + + +K  E+R IP D DY  +  LS E ++ ++ ++P N+ QA++I G
Sbjct: 551 KYDGYIKKSLQQVERMKKMEERRIPTDIDYHQISGLSKESRDNMTKIRPLNIGQAARIAG 610

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           +TPA +++L++Y++   V + E
Sbjct: 611 VTPADISVLMVYLEYKRVGVAE 632


>gi|254436863|ref|ZP_05050357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 307]
 gi|198252309|gb|EDY76623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 307]
          Length = 625

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/620 (53%), Positives = 426/620 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVI+IGGGHAGCEAA  +A+ G  T LIT + S IG MSCNPAIGGLGKGHLVRE
Sbjct: 4   VKHAYDVIIIGGGHAGCEAAHASARSGVRTLLITLRLSDIGVMSCNPAIGGLGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD AGIQFR+LN +KGPAV+GPRTQADR LYR A+Q    ++ NL+V +
Sbjct: 64  IDALDGVMGRAADRAGIQFRLLNRRKGPAVQGPRTQADRALYRSAVQELTTARSNLEVRE 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV   + ++  +  + ++D S I  + VVLT+GTFLRGVIHIG +    GRMGD PS +
Sbjct: 124 GEVVDLSLDRGRVDGVTLKDGSRISATAVVLTSGTFLRGVIHIGNVAQAGGRMGDLPSIA 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L      +D   GRLKTGTP RLDG+TI WD  E+Q AD     FSFM      +QI CG
Sbjct: 184 LAERLSSYDLPLGRLKTGTPPRLDGRTIHWDGLERQDADVEPELFSFMHHSPFVKQIACG 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH +I +N+K SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL 
Sbjct: 244 ITHTNPQTHEVIKKNLKRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLT 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP ++Q +++ +I GLE   I++PGYAIEYDYI+P+ L   LE K++ 
Sbjct: 304 DHTIYPNGISTSLPVDVQEEYVHSIVGLEDAKILQPGYAIEYDYIDPRSLSTQLELKRMP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQG+VAG+N+A + N  D + F R+ SYIGVMIDDLT +GV 
Sbjct: 364 GLFLAGQINGTTGYEEAAAQGMVAGLNAAAQVNSRDPVLFDRSTSYIGVMIDDLTVRGVS 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP G  +GC+ + R   F     E +  R +L  +
Sbjct: 424 EPYRMFTSRAEFRLSLRADNADQRLTPFGRGVGCVEDERWSVFINKTNELDHGREVLLGI 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +S++L+   +    DG  RT  + L+    ++ +L  + P   K    +  +L+ ++ 
Sbjct: 484 SASSRDLNKAGVKVSIDGPKRTLADALTIAGTTVNDLAELAPQLSKIPKDIASQLERDAL 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQM + + +K +  +LIP D +Y S+  LSNELK KL    P NL QAS+I+G+
Sbjct: 544 YSHYVDRQMRDIEGMKRDSCKLIPNDLNYGSISGLSNELKSKLKTALPDNLAQASRIDGI 603

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPAAL L+   IKK   +  
Sbjct: 604 TPAALMLVAAEIKKRQTRAK 623


>gi|260662532|ref|ZP_05863427.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553223|gb|EEX26166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus fermentum 28-3-CHN]
          Length = 644

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 358/623 (57%), Gaps = 8/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T LIT     +  M CNP++GG  KG +VREIDA
Sbjct: 22  DYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGVVVREIDA 81

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   IQ R+LN  KGPAVR  R QAD+  Y   M+  I  ++NL + QG V
Sbjct: 82  LGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKWTIEKEKNLTLRQGVV 141

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 142 DDLIVEDGTVKGVITNTGAAYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKAAVKLSE 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R+DG TI + KTE+Q  D+    FSF T          QI  
Sbjct: 202 ALERLGFDLQRFKTGTPPRVDGNTIDYSKTEEQPGDQTPNHFSFDTPDTSYIPVKDQISS 261

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH I+  N+  + ++SG I+  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 262 WLTYTNPTTHEILRNNLDRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQVFLEPEGR 321

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +G+ST++PEEIQHQ I ++ GLE   ++RPGYAIEYD + P +L  TLETK +
Sbjct: 322 DTDEFYLDGLSTSMPEEIQHQMIHSVAGLEHAELMRPGYAIEYDVVAPYQLKATLETKLV 381

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + L+ AGQ NGT+GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 382 NNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 441

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R     +  Q      + LK 
Sbjct: 442 KEPYRLLTSRAEYRLILRHDNADLRLMEKGHAIGLVSDERLAAMEEKKQRVEDEIARLKD 501

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDAR-KFSSLVIERL 536
             +         +    D   + A     FL  P      L         +     +E++
Sbjct: 502 FRIKPGEEIDAFVVAHGDKPLKDAIAADAFLRRPYVDYPTLLKFVDAPAVELDRQEVEQV 561

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA Y  ++  + + +K  E + IP D DY ++  L+ E ++KL  ++P  L QAS
Sbjct: 562 EIQLKYAGYIEKEEAKIERLKRMEAKRIPADIDYQAIEGLATEGRQKLEQIRPTTLAQAS 621

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA L +L +Y+++  +K
Sbjct: 622 RISGVNPADLAILSVYLRQGKLK 644


>gi|209551501|ref|YP_002283418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537257|gb|ACI57192.1| glucose inhibited division protein A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 625

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/617 (60%), Positives = 463/617 (75%), Gaps = 1/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDKVYDVIVIGGGHAGSEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNKKKGAAVRGPRTQADRKLYRLAMLAAIEATAGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          ++ ++MQD  ++  + VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLKVVDGRVAGVIMQDGRVLGAAAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L PFS MTD IT  QIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQAVGRQGADEELTPFSLMTDAITTPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q +FI+TIPGLE+  II+PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQAEFIKTIPGLERARIIQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AGIN+A +S+  D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 KGLFLAGQINGTTGYEEAAAQGLAAGINAALRSSDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLTP+ M+LGC+   R++RF +Y  E    R LL+S
Sbjct: 421 TEPYRMFTSRAEYRLMLRADNADMRLTPLAMQLGCVSGERERRFTRYQTEIEAGRVLLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           L +T        ++   DG+ RTAY+ LSYP++    L  + PD     +  V E L+IE
Sbjct: 481 LAVTPNEARRVGLNINLDGQRRTAYDLLSYPNYDFDVLRKVWPDELGAVAGKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E R IP DFDY++L  LSNELK KL   +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEDRHIPADFDYTALSGLSNELKAKLGAARPFNIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKN 616
           GMTPAA+ LLL+++++ 
Sbjct: 601 GMTPAAVALLLVHLRRR 617


>gi|325922968|ref|ZP_08184678.1| glucose-inhibited division protein A [Xanthomonas gardneri ATCC
           19865]
 gi|325546549|gb|EGD17693.1| glucose-inhibited division protein A [Xanthomonas gardneri ATCC
           19865]
          Length = 634

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/623 (45%), Positives = 384/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRTLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E + +  ++ Q         VVLT GTFL G IH+G+ +  AGRMGD P+ 
Sbjct: 128 DLLIHNGATEGDSVRGVITQTGLRFEAPAVVLTAGTFLAGKIHVGETQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM  +  + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYSVMAEQPGDDPLPVMSFMGQRSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITHTTEQTHDIIRSALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L    +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LEVTEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQALPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT +G  +G + + R  RF+   +      + L+
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGVGRAMGLVDDARWARFSSKQEAVQRESARLQ 487

Query: 480 SLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N               +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVAQTLGVAVSRETNVLDLIKRPELNYAALMRVPTLGPGVDDTQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLERVRPQSIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIAGMTPAAISLLLVHLERARR 630


>gi|218189778|gb|EEC72205.1| hypothetical protein OsI_05293 [Oryza sativa Indica Group]
          Length = 717

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 376/624 (60%), Gaps = 4/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL + +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                      + +  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASH 243

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  I   Q+ 
Sbjct: 244 GLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMC 303

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLEPEG
Sbjct: 304 CYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEG 363

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 364 RDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKK 423

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 424 FEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKD 483

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I +RR + +          +  LK
Sbjct: 484 LREPYRMLTSRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLK 543

Query: 480 SLVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S  +       + TS+S +   ++ T    L  P    + L          S +  E ++
Sbjct: 544 STKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVE 603

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  +  RQ  + ++I  +E + +P+D DY S+  LS E +EKLS ++P  + QAS+
Sbjct: 604 IDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASR 663

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G++PA + +LLI+++ N    N
Sbjct: 664 IGGVSPADMTVLLIWMESNRRMAN 687


>gi|311745075|ref|ZP_07718860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Algoriphagus sp. PR1]
 gi|126577588|gb|EAZ81808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Algoriphagus sp. PR1]
          Length = 621

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/622 (43%), Positives = 376/622 (60%), Gaps = 8/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+G GHAGCEAA  AAK+G+   L T   +TI  MSCNPA+GG+ KG +VR
Sbjct: 1   MFPK-YDVIVVGAGHAGCEAAHAAAKMGSKVLLCTMNMNTIAQMSCNPAMGGVAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+ G ++D + IQFR+LN  KGPA+  PR+Q DR  +    +  +    N+D  
Sbjct: 60  EIDALGGMSGIISDKSMIQFRMLNRSKGPAMWSPRSQNDRMRFAEEWRLALERTPNVDFW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  + G   +   +  +       I   +VVLT GTFL G+IHIG+ +   GR G+S + 
Sbjct: 120 QEMITGIIEKDGRVKGVKTGIGIEIEAKSVVLTNGTFLNGLIHIGEKQFGGGRTGESAAK 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIE 239
            +    +   F++GR+KTGTP R+DG+++ + K E Q+ DE    FS+  +      Q  
Sbjct: 180 GITEQLVSLGFESGRMKTGTPPRVDGRSLDYSKMEVQYGDENPEKFSYSDETSPIKEQRT 239

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN E H  + E    S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG
Sbjct: 240 CWITYTNKEVHSTLEEGFDRSPMFNGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEG 299

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q++ I+ I G E   + RPGYAIEYD+  P +L  TLET+ 
Sbjct: 300 WNTVEIYVNGFSTSLPEDVQYKAIQKITGFENAKMFRPGYAIEYDFFPPTQLKLTLETQL 359

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + D     R+D+YIGV+IDDL +KG
Sbjct: 360 VEGLYFAGQINGTTGYEEAASQGLIAGINASLKVQEKDPFLLKRSDAYIGVLIDDLINKG 419

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DNAD RLT +G  L    + R  +     Q    L + LK
Sbjct: 420 TEEPYRMFTSRAEFRLLLRQDNADLRLTELGYNLNLASQERFDKMQSKKQNTAKLINDLK 479

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLVI 533
              L  + ++    ++   +  +  +  + L  P   +  +  + PD       F   V 
Sbjct: 480 QKKLAPEQINKGLEALGTAEIKEKISLEKLLKRPQLGLDQMMDLDPDISKFLEGFPKDVR 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +++  Y +Y  ++     ++   E   IP  FDY ++PALSNE K+KL  +KP  L 
Sbjct: 540 EQAEVQIKYDSYIEKEQQMVNKLSNMENFKIPLKFDYLTIPALSNEGKQKLHKIKPETLG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA L++L +Y+ +
Sbjct: 600 QASRISGVSPADLSILTVYLGR 621


>gi|303234692|ref|ZP_07321320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna BVS033A4]
 gi|302494175|gb|EFL53953.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna BVS033A4]
          Length = 627

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/621 (40%), Positives = 369/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E
Sbjct: 6   YENPYDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+
Sbjct: 66  VDALGGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIE 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  
Sbjct: 126 AEVVDIGVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKK 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  
Sbjct: 186 LSDSLKNLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEH 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEG
Sbjct: 246 CYLTYTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +
Sbjct: 306 LSTKEMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLE 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG
Sbjct: 366 INNLFFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LK
Sbjct: 426 TNEPYRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLK 485

Query: 480 SLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+++T    ++     +   +     T  + +  P+ +         D  +    +  ++
Sbjct: 486 SIMVTPTEETNEKLRKLGSSELKTGITLLDLIKRPELTYDKTEEFDADRPELPRYLRLQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +    Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS
Sbjct: 546 ETHIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++P+ +N+LLIY++   
Sbjct: 606 RISGVSPSDINVLLIYMETRK 626


>gi|297588068|ref|ZP_06946712.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ATCC 53516]
 gi|297574757|gb|EFH93477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Finegoldia magna ATCC 53516]
          Length = 627

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/621 (40%), Positives = 368/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E
Sbjct: 6   YENPYDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+
Sbjct: 66  VDALGGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIE 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N I S+     ++     V+L TGT+L+G++ +G+    +G  G   S  
Sbjct: 126 AEVVDIGVEDNKIKSVTTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKK 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L +S      +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  
Sbjct: 186 LSDSLKNLGIELRRFKTGTPARVHKDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEN 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T  +T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEG
Sbjct: 246 CYLTYTTHKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +
Sbjct: 306 LSTKEMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLE 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG
Sbjct: 366 INNLFFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LK
Sbjct: 426 TNEPYRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLK 485

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFL---SYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+++T    ++  +      + +T    L     P+ +         +  +    +  ++
Sbjct: 486 SIMVTPTEETNEKLRKLGSSELKTGINLLDLIKRPELTYDKTEEFDVNRPELPRYLRLQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +    Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS
Sbjct: 546 ETHIKYEGYIAKQMSQIKQFKKLENRKLYMIEDYKEVMGLSNEAVQKLNDIKPESLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++P+ +N+LLIY++   
Sbjct: 606 RISGVSPSDINVLLIYMETRK 626


>gi|326804312|ref|YP_004322130.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650443|gb|AEA00626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 644

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/628 (42%), Positives = 370/628 (58%), Gaps = 12/628 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+G GHAGCEAA  +A++G  T L+T   + +  M CNP+IGG  KG +VREIDA
Sbjct: 8   SFDVIVVGAGHAGCEAALASARMGMETLLVTIDINMVAFMPCNPSIGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D   IQ R+LN  KGPAVR  R QAD+E Y   M+R +  QE L + QG V
Sbjct: 68  LGGEMGKNIDKTYIQMRMLNTGKGPAVRALRAQADKEAYAREMRRTVERQEGLTLRQGIV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++ Q  ++ R    +LT GT  RG I IG+LK  AG     P+ +L  
Sbjct: 128 DDLVVEDGVCRGVITQTGALYRSKATILTMGTSARGEIIIGELKYSAGPNNSQPALNLTK 187

Query: 185 SF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIE 239
           +   K+ FD  R KTGTP R+D KT+ + K E Q        FSFMT          Q+ 
Sbjct: 188 NLAEKYGFDITRFKTGTPPRVDKKTVDFSKMEIQPGSAEPNHFSFMTPDENYIPVSEQVP 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH +I  N+  + +++G ++  G RYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 248 CHLTFTNAKTHELIRANLDRAPMFTGIVEGVGARYCPSIEDKIVRFADKPKHQLFLEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            + + +Y  G+ST+LPE++Q + + +I G+EK  IIR GYAIEYD + P +L  T ETK 
Sbjct: 308 RDNEEIYLQGLSTSLPEDVQIEMVHSITGMEKAQIIRDGYAIEYDVVRPSQLKATFETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQ NGT+GYEEAA QGL AGIN+  K    +     R ++YIGV++DDL +KG
Sbjct: 368 IENLYTAGQTNGTSGYEEAAGQGLYAGINAVLKIQGKEAFILGRDEAYIGVLVDDLVTKG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G ++G + E R + F  +    N     L+
Sbjct: 428 TTEPYRLLTSRAEYRLLLRHDNADWRLTEKGYEIGLVTEDRYQAFKAHQAAVNEELDRLE 487

Query: 480 SLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              L   +     L S   S  +DG    A E L  P+ SI ++    P  +     V E
Sbjct: 488 HTRLKPSDDLQAYLESKGSSRLKDGI--LASELLRRPELSIDDILKFAPGDKDLGHKVYE 545

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            + +   YA Y  +   + K ++  E +LIP+D DYS +  L+ E K++LS ++P  L Q
Sbjct: 546 EVAVAIKYAGYIEKAQKQVKRLRKMEGKLIPEDIDYSQIEGLATEAKDRLSTIEPRTLAQ 605

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           AS++ G+ PA +++L +Y++  TV   +
Sbjct: 606 ASRVSGVNPADVSILAVYLESATVTKKD 633


>gi|46447473|ref|YP_008838.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|81170564|sp|Q6MA36|MNMG_PARUW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46401114|emb|CAF24563.1| putative glucose-inhibited division protein [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 625

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/619 (45%), Positives = 383/619 (61%), Gaps = 15/619 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAGCEAA  +A++G  T L+T    TI  MSCNPA+GG+ KGH+VREIDAL
Sbjct: 10  YDVIVIGGGHAGCEAALASARMGLRTLLLTMNLDTIAKMSCNPAVGGIAKGHIVREIDAL 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+V D  GIQ+R+LN  KGPAV  PR QAD+  Y+  M+  +    NLD+ QG + 
Sbjct: 70  GGEMGKVIDVTGIQYRMLNATKGPAVWAPRAQADKLAYQSEMKHRMERVSNLDIKQGTIE 129

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I  ++ ++     C  +VL++GTFLRG++HIG+     GR GD PS  +  S
Sbjct: 130 DLLIENDHICGVITKEGISYDCQAIVLSSGTFLRGLLHIGETNYSGGRAGDQPSVGMSAS 189

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             K+    GRLKTGTP R++ ++I +  TE+Q  D   + FS+  + I    Q+ C IT 
Sbjct: 190 LEKYGLKLGRLKTGTPPRINKRSIDFSCTEEQPGD-PGVKFSYDNEGIPRLPQVSCYITY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ET +II+ NI  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEGL T  
Sbjct: 249 TTEETKQIILSNIHRSPMYSGKIKGVGPRYCPSIEDKVVRFSDKERHQIFLEPEGLQTQE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NG+S++LP ++Q  FI++IP L    I+RP YAIEYDY+   ++  +LE KKI GLF
Sbjct: 309 VYVNGVSSSLPFDVQLAFIKSIPALRHAEIMRPAYAIEYDYVISGQIDFSLECKKIGGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL+AGIN+A K      +   R+++YIGVMIDDL +KG+ EPY
Sbjct: 369 LAGQINGTSGYEEAAGQGLMAGINAANKVMGKAPLILKRSEAYIGVMIDDLVTKGLDEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RL   G ++G + + R  R  +  +        L      
Sbjct: 429 RMFTSRAEHRLLLRQDNADLRLRRYGYEVGLVDQTRYDRVKEKQRIMEEESERLAKTFKQ 488

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIESSYA 543
             N            K  T  + L  P+ +  +L    PD  + F   +  ++++   YA
Sbjct: 489 VSN------------KGYTLTQLLCRPENTYASLLKEYPDVMQNFGEEINFQIELNLKYA 536

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E  ++   EK  IP  FD+S++  L NE K+KL+ + P +L QA +I G++P
Sbjct: 537 GYIDRQTSEVAKLAHVEKIQIPIGFDFSTVNGLRNEAKQKLNQIAPRHLGQALRISGVSP 596

Query: 604 AALNLLLIYIKKNTVKLNE 622
           A +++L+I + +    + +
Sbjct: 597 ADISILMIALTRYQEPIEK 615


>gi|218885655|ref|YP_002434976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756609|gb|ACL07508.1| glucose inhibited division protein A [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 633

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/613 (44%), Positives = 369/613 (60%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 11  FDCIVVGAGHAGCEAAMASARLGHPTLLLTSNADRIGHLSCNPAIGGLAKGHMVKEIDAL 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LNV KGPAVR  R Q DR+ Y  A++R++ +Q+NL V Q    
Sbjct: 71  GGMMGLWADEAGIQFRTLNVSKGPAVRATRAQIDRDAYLHAVRRDVFAQDNLWVWQDTAE 130

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +        R  TV+LTTGTFL G+IH+G    P GR+GD+P+  L  S
Sbjct: 131 AILAEQGRAAGVRTGLGQEFRARTVLLTTGTFLCGLIHVGLTNFPGGRLGDAPAVGLSAS 190

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E+Q  DE   PFSF    +   Q+ C +T T
Sbjct: 191 LRTHGLELGRLKTGTTPRLLRASIDFSVMEEQPGDEPPRPFSFRGPGVRLPQVPCYMTWT 250

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I   G RYCPSIEDK+ RF +R  HQIF+EPEGL +   
Sbjct: 251 NERTHAAIRAGFDRSPMFTGVITGTGARYCPSIEDKVARFPDRERHQIFVEPEGLTSPEC 310

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP ++Q   I TIPGLE   I+RPGYAIEYDY +P +L PTLETK + GL+L
Sbjct: 311 YPNGIPTSLPLDVQKAMIATIPGLENAQIVRPGYAIEYDYADPIQLHPTLETKTLPGLYL 370

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N++     L      R  +Y+ V++DDL +KG  EPYR
Sbjct: 371 AGQINGTSGYEEAAAQGLWAALNASCALRGLPPFLPGRDAAYMAVLVDDLVTKGTREPYR 430

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD RLTP+G  LG + +     F         L + L+   +T 
Sbjct: 431 MFTSRAEHRLLLRENNADARLTPLGRDLGLVDDGHWAVFRARHDALADLMTELEQRRVTP 490

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +      +      +  +  E L  P  S++ L +  P+A   +  V E  +    Y
Sbjct: 491 DAATRAVFADLGEAVPTRAVSLAELLRRPTMSLERLRAFWPEATDHAPEVREEAETIIRY 550

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ    +    +E + +P+  DY+++  L+ E+ EKL+ ++P  + QA++I G+T
Sbjct: 551 SGYLARQEELVERAARQESQPLPEGLDYTAVAGLTREIVEKLTRVQPRTMGQAARISGVT 610

Query: 603 PAALNLLLIYIKK 615
           PAAL  + I+++K
Sbjct: 611 PAALTCIEIHLRK 623


>gi|115442371|ref|NP_001045465.1| Os01g0960300 [Oryza sativa Japonica Group]
 gi|57900292|dbj|BAD87125.1| putative glucose inhibited division protein A [Oryza sativa
           Japonica Group]
 gi|113534996|dbj|BAF07379.1| Os01g0960300 [Oryza sativa Japonica Group]
 gi|222619912|gb|EEE56044.1| hypothetical protein OsJ_04841 [Oryza sativa Japonica Group]
          Length = 717

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 376/624 (60%), Gaps = 4/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL + +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                      + +  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASH 243

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  I   Q+ 
Sbjct: 244 GLTENLQQLGFETDRLKTGTPPRIDRRTVNFSGLEPQHGDEEVGWFSFDPEFHIERDQMC 303

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLEPEG
Sbjct: 304 CYLTRTTKETHQIVRDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEG 363

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 364 RDVPELYLQGFSTGLPERLQLSLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKK 423

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 424 FEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIILERESSYIGTLIDDLVTKD 483

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I +RR + +          +  LK
Sbjct: 484 LREPYRMLTSRSEHRLLLRADNADSRLTPLGRDIGLIDDRRWELYQSKQARIKEEKERLK 543

Query: 480 SLVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S  +       + TS+S +   ++ T    L  P    + L          S +  E ++
Sbjct: 544 STKIPGGEFAAAVTSVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSRIEKECVE 603

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  +  RQ  + ++I  +E + +P+D DY S+  LS E +EKLS ++P  + QAS+
Sbjct: 604 IDIKYEGFIARQQSQLQQIVNQEHKKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASR 663

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G++PA + +LLI+++ N    N
Sbjct: 664 IGGVSPADMTVLLIWMESNRRMAN 687


>gi|51894469|ref|YP_077160.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Symbiobacterium thermophilum IAM 14863]
 gi|81170583|sp|Q67J34|MNMG_SYMTH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51858158|dbj|BAD42316.1| Glucose inhibited division protein A [Symbiobacterium thermophilum
           IAM 14863]
          Length = 630

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/617 (41%), Positives = 360/617 (58%), Gaps = 3/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAG EAA  AA+ G  TA  T     IG+M+CNP+IGG  KGHLVRE
Sbjct: 3   LTKEYDVIVVGAGHAGIEAALAAARKGMRTACFTTTLENIGAMNCNPSIGGPAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M   ADA  +Q R+LN  KGPAV+  R Q D+  Y  AM+  +    NLD+ Q
Sbjct: 63  IDALGGQMALTADATFLQMRLLNSGKGPAVQALRAQIDKRAYAWAMRLVLERTPNLDLKQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  IV           VVL+TGT+L G   IG+++  +G  G +P+  
Sbjct: 123 AMVQEIVVEDGRVRGIVTATGIFYGAKAVVLSTGTYLHGRTIIGEVQRSSGPGGLAPAVG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F+ GR KTGTP R+DG+T+ + +  +Q  D     FSFM+      Q+ C 
Sbjct: 183 LTESLKRLGFEVGRFKTGTPPRVDGRTVDFSRMVRQDGDPEPHRFSFMSPLDHREQLPCW 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T   +H +I  N+  + +++G I+  GPRYCPS+EDK+VRF ++  HQ+FLEPE   
Sbjct: 243 LTHTTPASHELIRRNLHRAPMFTGVIEGRGPRYCPSVEDKVVRFADKESHQVFLEPESRE 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  +Y  G+ST+LPEE+Q + +RT+PG+E+  ++RPGYAIEYDYI   +L P+LETK + 
Sbjct: 303 SHEMYVLGLSTSLPEEVQIELVRTVPGMEEAELMRPGYAIEYDYIVSTQLKPSLETKLVR 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF  GQINGT+GYEEAAAQGL+AGIN+A      + +  SR++ YIGV+IDDL +KG  
Sbjct: 363 GLFCGGQINGTSGYEEAAAQGLIAGINAACYVEGREPLVISRSEGYIGVLIDDLVTKGSP 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAE+R+ LR DNA  RLT  G + G + + R + F          R  L   
Sbjct: 423 EPYRMLTSRAEFRMMLRQDNAHLRLTEKGREYGLVDDARWEVFVALRDGIEAERERLART 482

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+            +         T  + L  P+   ++L  +          +   ++ 
Sbjct: 483 VVGPAPEVQRVLERLGSAPLKAGVTLEQLLRRPEVRYEHLVEMGLGRPDLDEAIWREVET 542

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  YA Y  ++  +   ++  E R IP   DY +L  LS E +EKLS ++P  L QAS+I
Sbjct: 543 QVKYAGYIAKEQQQVDRMRRMEARRIPPTLDYQALTGLSMEAREKLSRIRPETLGQASRI 602

Query: 599 EGMTPAALNLLLIYIKK 615
            G++PA + +L++++ +
Sbjct: 603 SGVSPADVAVLMVHLDR 619


>gi|168334918|ref|ZP_02693038.1| glucose inhibited division protein A [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 635

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/627 (42%), Positives = 377/627 (60%), Gaps = 7/627 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D IVIGGGHAGCEAA   A+LG  T +       I  M CNP IGG  KGHLV+EIDAL 
Sbjct: 9   DAIVIGGGHAGCEAALSLARLGKKTVIFCLNIEAIAKMPCNPNIGGTSKGHLVKEIDALG 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ ++LN  KGPAV   R QAD+  Y  AM + + ++ NL + Q EV+ 
Sbjct: 69  GEMGKNIDKTYIQSKMLNTSKGPAVHSLRAQADKVEYHKAMLKVLDAETNLTIKQQEVSD 128

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +     ++     VV+ TGT+L+  I IG+    AG  G   S  L NS 
Sbjct: 129 ILIENARVMGVRTITGAIYYAKAVVVCTGTYLKSKIFIGEFAENAGPDGLKSSQVLSNSL 188

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGITR 244
           +       R KTGTPAR+D +TI +   E Q  D +++PFSF      I   QI+C +T 
Sbjct: 189 LDNGITLRRFKTGTPARVDKRTIDFTAMEAQLGDSKVVPFSFSNSAASIKKNQIQCFLTY 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  S +Y G I+  GPRYCPSIEDK+VRF +++ HQIF+EPEG+ T+ 
Sbjct: 249 TNEQTHQIIRDNLDRSPLYGGKIEGVGPRYCPSIEDKVVRFADKSRHQIFIEPEGVETNE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q Q +R++ GLE V +IR GYAIEYD INP  L  +LE K ISGLF
Sbjct: 309 MYVQGMSSSLPEEVQIQMLRSVRGLENVEVIRGGYAIEYDCINPTSLLHSLENKVISGLF 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQING++GYEEAAAQGLVAGIN+A K +  + +   R + YIGV+IDDL  KG  EPY
Sbjct: 369 FAGQINGSSGYEEAAAQGLVAGINAALKIDAKEPLIIDRAEGYIGVLIDDLVIKGTNEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RL   G  +G + +    +F    +        +K + + 
Sbjct: 429 RMLTSRAEYRLLLRQDNADIRLMTKGHDIGLVPDDIYAKFLDKQEVIEAEIERIKKVFVG 488

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +     + +  K         + +E L  P+   ++  ++  D  + S  +IE+++I   
Sbjct: 489 TTATVQSILMAKGSTPLTSGMSLHELLKRPELDYKDFAAVNLDGPELSDEIIEQIEITLK 548

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ+I+  + K  EK+LIP++  Y  + +L  E ++KL  +KP ++  AS+I G+
Sbjct: 549 YEGYIKRQLIQVDQFKKLEKKLIPENLKYEDIKSLRIEARQKLLEIKPKSIGAASRISGV 608

Query: 602 TPAALNLLLIYIK--KNTVKLNEIVLV 626
           +PA ++++L+Y++  K T + N+  + 
Sbjct: 609 SPADISVMLVYMEQLKRTERANDASVS 635


>gi|120602377|ref|YP_966777.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris DP4]
 gi|166222930|sp|A1VD34|MNMG_DESVV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|120562606|gb|ABM28350.1| glucose inhibited division protein A [Desulfovibrio vulgaris DP4]
          Length = 629

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/613 (44%), Positives = 360/613 (58%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IV+G GHAGCEAA   A++G +T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 13  YDCIVVGAGHAGCEAAMALARMGHATLLLTGNADRIGHLSCNPAIGGLAKGHMVKEIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y   ++R+I +Q NL V Q    
Sbjct: 73  GGMMGLWADEAGIQFRTLNSSKGPAVRATRAQIDRDAYLRVVRRDIFAQPNLRVWQDMAE 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +        R   V+LTTGTFL+G IH+G    P GR+GD+P+  L  S
Sbjct: 133 SIIVEGGRAAGVRTAYGQEFRAHHVLLTTGTFLQGRIHVGLNNFPGGRLGDAPATGLSAS 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E Q  D+   PFSF    +   Q+ C +T T
Sbjct: 193 LRAIGLELGRLKTGTTPRLLRDSIDFSLMEVQPPDDPPRPFSFRGPGVRLPQLPCHVTWT 252

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G IK  G RYCPSIEDK+ RF E+  HQ+F+EPEGL +   
Sbjct: 253 NERTHEAIRAGFDRSPMFTGVIKGTGARYCPSIEDKVARFPEKERHQVFVEPEGLESPEC 312

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP E+Q   I TIPGLE   I+RPGYAIEYDY +P +L  TLETK + GL+L
Sbjct: 313 YPNGIPTSLPLEVQKAMIATIPGLENAQIVRPGYAIEYDYADPVQLRSTLETKALRGLWL 372

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N +     +      R  +Y+ V++DDL +KG  EPYR
Sbjct: 373 AGQINGTSGYEEAAAQGLWAALNVSCTLRSMPPFLPGRDTAYMAVLVDDLVTKGTREPYR 432

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD RLT  G  LG + +   +RF+      + L   L++  +T 
Sbjct: 433 MFTSRAEHRLLLRENNADARLTETGRALGLVDDTHWQRFSTKRAALHSLLDELENRRITP 492

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +    + +      K  +  + L  P  ++ +L        +F+  V E  +    Y
Sbjct: 493 DAAARDIFSRLGEPAPTKGVSLADILRRPSLTLPDLAPFWEGVTRFADDVREEAETIVKY 552

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ          E  ++P+D DY+ +P L+ E+ EKL  ++P  L QA++I G+T
Sbjct: 553 SGYLARQQELVARSARMEDTVLPEDMDYTVIPGLTREIVEKLGKVRPHTLGQAARISGVT 612

Query: 603 PAALNLLLIYIKK 615
           PAAL  L I ++K
Sbjct: 613 PAALTCLEIQLRK 625


>gi|89889742|ref|ZP_01201253.1| glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Flavobacteria bacterium BBFL7]
 gi|89518015|gb|EAS20671.1| glucose-inhibited division protein, GIDA (NAD/FAD-utilizing enzyme)
           [Flavobacteria bacterium BBFL7]
          Length = 623

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 387/623 (62%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +R YDVIV+G GHAG EAAAVAA +G+ST L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDREYDVIVVGAGHAGSEAAAVAANMGSSTLLVTMNLETIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL GL G V+D + IQF++LN  KGPA+  PRTQ DR  +    + ++ +   LD  
Sbjct: 61  EIDALGGLSGIVSDKSAIQFKMLNQSKGPAMWSPRTQNDRMRFSEEWRMQLEAIPLLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   E   +  +       IR   VVLT GTFL G+IHIG  +   GR G+  S 
Sbjct: 121 QEMVAGLIIEDEKVVGVRTSLGIEIRSKAVVLTNGTFLNGLIHIGDKQFGGGRAGERAST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +   F++GR+KTGTP R+DG+++ + K E Q  D     FS+         Q +
Sbjct: 181 GITGQLVDLGFESGRMKTGTPPRVDGRSLDYSKMEPQPGDAVTSKFSYSNLTSSLKNQRD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSPEVHNLLREGFDRSPMFNGRIKSLGPRYCPSIEDKIDRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTCEVYVNGFSTSLPEDVQFKALRSVVGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+ AGQINGTTGYEEAA+QGL+AGIN+ RK  + +     R ++YIGV++DDL +KG
Sbjct: 361 IDGLYFAGQINGTTGYEEAASQGLMAGINAVRKIREEEPFILKRDEAYIGVLVDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP  + LG + +   KR  +   E   +   L+
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADLRLTPRAVDLGIVTDESLKRVERKATESEKMVQFLR 480

Query: 480 SLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
                 K +++  ++   KQ  +    ++  S P  +++++ +I               +
Sbjct: 481 DTSYDFKEMNNLLVAKGSKQVTQNDKLFKVFSRPQVNLEDIKTISQVKGYLKENDLDDDI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E++++   YA Y  ++   A ++   E   IP D+D+ S+ +LS E +EKL+ ++P  +
Sbjct: 541 LEQVEVHVKYAGYIAKEKDNADKLHRLENVKIPSDYDFKSIKSLSYEAREKLTTIQPATV 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++LL+++ +
Sbjct: 601 SQASRISGVSPSDISVLLVHMGR 623


>gi|24380471|ref|NP_722426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus mutans UA159]
 gi|81170580|sp|Q8DRS6|MNMG_STRMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24378501|gb|AAN59732.1|AE015035_1 glucose inhibited division protein-like protein GidA [Streptococcus
           mutans UA159]
          Length = 631

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 377/625 (60%), Gaps = 7/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIG GHAG EA+   +++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FTENYDVIVIGAGHAGVEASLATSRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+  D + IQ R+LN  KGPAVR  R QAD+ LY   M+  +  QENL + Q
Sbjct: 65  IDALGGEMGKNIDKSYIQMRMLNTGKGPAVRALRAQADKALYARNMKHTVEQQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       V++TTGT LRG I +G+LK  +G      S +
Sbjct: 125 SMIDEILVEDGKVIGVRTATNQKYSAQAVIVTTGTALRGEIILGELKYSSGPNNSLASVT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++      + GR KTGTP R+   +I +D+TE Q  D++   FSFM+  +     QI 
Sbjct: 185 LADNLRDLGLEIGRFKTGTPPRVKANSIHYDETEIQPGDKKANHFSFMSKDEDYLKDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II +N+  + ++SG +K  GPRYCPSIEDKIVRF +++ HQ+FLEPEG
Sbjct: 245 CWLTYTNQSSHDIINKNLYRAPMFSGIVKGVGPRYCPSIEDKIVRFADKDRHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RETEEVYIQGLSTSLPEDVQKDVVHSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D+YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKIQGKPELILKRSDAYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            LEPYR+ TSRAEYR+ LR DNAD RLT IG ++G + E R  RF     +++   + L 
Sbjct: 425 TLEPYRLLTSRAEYRLILRHDNADLRLTEIGHQVGLVNEERYMRFQIRKNQFDNELTRLS 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-PDARKFSSLVIER 535
           S+ L      N     + FK      TA EF+  P+ +     S   P A      VIE 
Sbjct: 485 SIKLKPVAEINKRIEELGFKPLTDALTAKEFMRRPEINYAIATSFVGPAAESLDEKVIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           L+ E  Y  Y  + + +  ++K  E++ IPK+ D+ ++ +++ E ++K   + P  + QA
Sbjct: 545 LETEIKYEGYINKALDQVAKMKRMEEKRIPKNIDWDAIDSIATEARQKFKKINPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIK-KNTVK 619
           S+I G+ PA +++L++Y++ KN  +
Sbjct: 605 SRISGVNPADISILMVYLEGKNRSR 629


>gi|167564630|ref|ZP_02357546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderia oklahomensis EO147]
          Length = 630

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/602 (45%), Positives = 370/602 (61%), Gaps = 15/602 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+TH   T+G MSCNP+IGG+GKGHLV+E+DAL G M    D  GIQFR+LN  
Sbjct: 1   MGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQFRILNSS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LY+ A++  + +Q NL + Q  V     E + +   V Q     R
Sbjct: 61  KGPAVRATRAQADRVLYKQAIRHRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFR 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVLT GTFL G IH+G      GR GD  + SL +   +     GRLKTGTP R+DG
Sbjct: 121 ARAVVLTAGTFLDGKIHVGLNNYTGGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDG 180

Query: 207 KTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYS 264
           +TI + K E+Q  D   IP FSF+     + Q + C +T TN  TH II   +  S +Y+
Sbjct: 181 RTIDFSKLEEQPGDLDPIPVFSFIGRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYT 240

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF  ++ HQIFLEPEGL T+  YPNGIST+LP ++Q + + 
Sbjct: 241 GVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVH 300

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++ GLE+ +I+RPGYAIEYDY +P+ L  +LETK I+GLF AGQINGTTGYEEAAAQGL+
Sbjct: 301 SMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAINGLFFAGQINGTTGYEEAAAQGLL 360

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+ R + + +  C  R  +Y+GV++DDL ++GV EPYRMFTSRAEYR+SLR DNAD 
Sbjct: 361 AGINAGRYAQEKEAWCPRRDQAYLGVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADM 420

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKT 501
           RLT IG +LG + + R   F +     +     L++  +T K L    +T++  K     
Sbjct: 421 RLTEIGRELGVVDDVRWGAFNRKRDAVSRETERLRTTWVTPKTLPAEEATALLGKPIDHE 480

Query: 502 RTAYEFLSYPDFSIQNLFSI----------CPDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +  E L  P  S + +  +            D     + + E+++I   Y  Y  RQ  
Sbjct: 481 YSLAELLRRPGVSYEGVCELRNGECGPTEPLADDEILLAQIKEQIEIGIKYQGYIERQAG 540

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           E +     E   +P   DY+ +  LS E+ +KL+  +P  + QAS+I G+TPAA++LL++
Sbjct: 541 EIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGVTPAAISLLMV 600

Query: 612 YI 613
           ++
Sbjct: 601 HL 602


>gi|313893561|ref|ZP_07827131.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442004|gb|EFR60426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 623

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/619 (42%), Positives = 376/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  AA++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALAAARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ I + ENL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTIENTENLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         VVL TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVVLCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +  E Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMEVQEGDIHHHSFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIITSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWIEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G ++G + + R  +F            LL++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGREIGLVKDDRWDKFTAKKANIEEAMELLRNTPVN 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +        RT   AY+ +   + S   +       ++++  V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIRTGIHAYDLVKRNELSYAVVADAF-GLKRYTPDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMDQVDKVRKLEEKILPKEWDYTEIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|291558323|emb|CBL35440.1| glucose-inhibited division protein A [Eubacterium siraeum V10Sc8a]
          Length = 625

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/616 (44%), Positives = 377/616 (61%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  L  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQLTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G IK  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIKGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYIPDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF +     +   S +K   +  
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRFLERKNILDNETSRIKKATIYP 486

Query: 486 KNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               +  +  K      +     E L  P    ++L     +A +    +I++L+I   Y
Sbjct: 487 CEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLAQFDENAPELEHDIIDKLEINIKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I G+ 
Sbjct: 547 EGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKYRPLNIGQAGRISGVN 606

Query: 603 PAALNLLLIYI--KKN 616
           PA +++LLI++  +K+
Sbjct: 607 PADVSVLLIWLSGRKH 622


>gi|119503566|ref|ZP_01625649.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2080]
 gi|119460628|gb|EAW41720.1| glucose-inhibited division protein A [marine gamma proteobacterium
           HTCC2080]
          Length = 631

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/617 (45%), Positives = 394/617 (63%), Gaps = 4/617 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+V+GGGHAG EAA  AA+ GA T L+TH   T+G MSCNPAIGG+GK HLVRE+D
Sbjct: 6   QHYDVLVVGGGHAGTEAALAAARTGAKTLLLTHAIDTLGQMSCNPAIGGIGKSHLVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+M R AD AGIQFRVLN +KGPAVR  R Q+DR LYR  ++  +L+Q NLD+ Q  
Sbjct: 66  ALGGVMARAADHAGIQFRVLNRRKGPAVRATRAQSDRVLYRNFIRTTLLNQPNLDIFQDS 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + +S  V ++    +  TVVLT GTFLRG +H G  +   GR GD+ S SL 
Sbjct: 126 VEDLTLDGHRVSGAVTRNGLKFKGHTVVLTAGTFLRGRLHTGMSQHEGGRAGDAASISLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGI 242
           +   +     GRLKTGTP R+D +T+ +   ++Q+ DE     S   D+  + Q + C +
Sbjct: 186 DRLRELCPRVGRLKTGTPPRVDARTVDFSALQEQWGDEPRPVMSLYGDRSDHPQQMCCWV 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II + +  S ++ G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 246 TETNTQTHDIIRQGLDRSPLFGGVIEGNGPRYCPSIEDKIHRFADKDSHQIFLEPEGLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q   +R+I G++  +I RPGYAIEYDY +P++L  +LET++I G
Sbjct: 306 TELYPNGISTSLPFDVQLNLVRSIAGMQSAHITRPGYAIEYDYFDPRDLKHSLETREIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+A+K+         R ++YIGV++DDL + G  E
Sbjct: 366 LFFAGQINGTTGYEEAAAQGLLAGVNAAQKAADRPAWEPGRDEAYIGVLVDDLVTLGTQE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT  G  LG + + +   F             L++  
Sbjct: 426 PYRMFTSRAEYRLLLREDNADLRLTEHGRNLGLVTDEQWDTFTTRKATIEEELHRLETTY 485

Query: 483 LTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   +  +  ++    K   +  +  + L  P+    ++  +   A   +    +++  +
Sbjct: 486 IQPGSTQAEQLTPKIKKPLVREYSLADLLRRPELEYHDVAGLSGTACVTTEHAADQVATQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  +  ++  +E  +IP D D++++  LSNE+++KL+  +P  + +A +I 
Sbjct: 546 IKYAGYIERQAEDIAKLHRQESAVIPDDIDFANVRGLSNEIQQKLTAARPSTIARAGRIS 605

Query: 600 GMTPAALNLLLIYIKKN 616
           G+TPAAL+LLL+YIK+ 
Sbjct: 606 GVTPAALSLLLVYIKRK 622


>gi|121608050|ref|YP_995857.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Verminephrobacter eiseniae EF01-2]
 gi|121552690|gb|ABM56839.1| glucose inhibited division protein A [Verminephrobacter eiseniae
           EF01-2]
          Length = 636

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/625 (43%), Positives = 370/625 (59%), Gaps = 27/625 (4%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81
             AA+LG  T L+T    T+G MSCNP+IGG+GKGHLV+E+DAL G M    D +GIQFR
Sbjct: 1   MAAARLGQRTLLLTQSLETLGQMSCNPSIGGIGKGHLVKEVDALGGAMALATDESGIQFR 60

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD 141
           +LN  KGPAVR  R QADR LY+ A++R + +Q  L + Q  V     E + +   V Q 
Sbjct: 61  ILNRSKGPAVRATRAQADRLLYKAAIRRRLENQPGLWLFQQAVDDLMLEGDRVVGAVTQV 120

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
             +     VVLT GTFL G IH+G     AGR G+  +  L     +     GRLKTGTP
Sbjct: 121 GVVFCARAVVLTAGTFLDGKIHVGLSHYAAGRAGEPSAIGLSARLKELKLPQGRLKTGTP 180

Query: 202 ARLDGKTIIWDKTEKQFADERL--------IPFSFM-----TDKITNRQIECGITRTNLE 248
            R+DG++I W + E+Q  D             FSFM       ++  +Q+ C IT TN  
Sbjct: 181 PRIDGRSIDWSQCEEQPGDGMPGGVNAGQVPVFSFMAHAYGGARMHPQQLPCWITHTNQR 240

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
           TH II      S +++G I+  GPRYCPS+EDKI RF +++ HQ+FLEPEGL T  VYPN
Sbjct: 241 THAIIRSGFDRSPMFTGSIEGVGPRYCPSVEDKINRFADKDSHQVFLEPEGLGTHEVYPN 300

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           GIST+LP +IQ+Q +R++ GLE  +I+RPGYAIEYDY +P+ L    ET++I GLF AGQ
Sbjct: 301 GISTSLPFDIQYQLVRSMAGLENAHILRPGYAIEYDYFDPRALKSNFETRQIRGLFFAGQ 360

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           INGTTGYEEAAAQGL AG+N+A +          R  +Y+GV++DDL +KGV EPYRMFT
Sbjct: 361 INGTTGYEEAAAQGLFAGVNAALQCRGDAPWLPGRDQAYLGVLVDDLITKGVTEPYRMFT 420

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           SRAE+R+ LR DNAD RLT +G ++G + + R + F++           LK+  +  +NL
Sbjct: 421 SRAEFRLQLREDNADMRLTEVGRRMGLVDDARWEVFSRKRDAVLRETERLKATWVNPRNL 480

Query: 489 ---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-----------ARKFSSLVIE 534
               S  +  K      + +E L  PD     L S+                  S  V+E
Sbjct: 481 PDIESGRVLGKPMAHEYSLFELLRRPDVDYAGLMSLDGGKYAAADVSRETLGMLSESVVE 540

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + YA Y  RQ  E +     E   +P   DY+ + ALS E ++ LS  +P  L Q
Sbjct: 541 QVEIAAKYAGYIERQKGEVERAAHFETLRLPAGLDYAQVTALSIEARQVLSRHRPETLGQ 600

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+TPAA++LLL+++KK   K
Sbjct: 601 ASRITGITPAAISLLLVHLKKGGFK 625


>gi|169832369|ref|YP_001718351.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Candidatus Desulforudis audaxviator MP104C]
 gi|205831505|sp|B1I6S1|MNMG_DESAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|169639213|gb|ACA60719.1| glucose inhibited division protein A [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 657

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/621 (43%), Positives = 372/621 (59%), Gaps = 13/621 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAGCEAA  +A+LG  T L+T     +  M CNPAIGG GK HLVREIDA
Sbjct: 7   KYDVIVVGGGHAGCEAALASARLGCRTLLLTLSIDFVALMPCNPAIGGPGKSHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D A IQ R+LN  KGPAVR  R Q D+ LY+  M+R +  Q  LD+ Q  V
Sbjct: 67  LGGEMGRNTDRAAIQVRMLNTGKGPAVRALRAQTDKRLYQEGMRRTVEGQPLLDLKQAMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +      +V +  +      V++TTGT+LR  + +G+    +G  G  P+  L  
Sbjct: 127 EKIIVDGGSARGVVTRTGARFLAPAVIVTTGTYLRSRVLVGETSFESGPNGQFPAVGLAA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGI 242
           +  +  F+ GR KTGTP R+D +T+ + +   Q  DE    FSF        Q  + C +
Sbjct: 187 NLRENGFELGRFKTGTPPRIDRRTLDFSRMTPQHGDEDCPGFSFAAGNRGKEQIQVPCWL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH II EN+  S +Y+G I+  GPRYCPSIEDK+VRF +R  HQ+F+EPEGL+T
Sbjct: 247 TYTTARTHEIIRENLDRSPLYTGIIQGTGPRYCPSIEDKVVRFADRERHQVFVEPEGLHT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+ST+LPE++Q   +R++PGLEKV I+R GYAIEYDY+ P +L PTLETK +SG
Sbjct: 307 NEMYVQGMSTSLPEDVQLLLLRSLPGLEKVEIVRYGYAIEYDYVVPTQLAPTLETKAVSG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGT+GYEEAAAQG+VAGIN+A+     + +  SR  +YIGV+IDDL +KG  E
Sbjct: 367 LFLAGQINGTSGYEEAAAQGIVAGINAAQSVKNGEPLVVSRAQAYIGVLIDDLVTKGTRE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+FTSRAEYR++LR DNAD RLT    ++G +     +RFA+           L   V
Sbjct: 427 PYRIFTSRAEYRLALRQDNADLRLTERAHRIGLVSGAHYERFAQKKDRVRAELERLDRTV 486

Query: 483 LTSKNLSSTSISFKQD----------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           +    L   S +  QD           +     E L  P+    +L  +       +  V
Sbjct: 487 V-PDPLGRVSRAEVQDWLAARGSAPLSRPCRLSELLRRPEIRYADLVGLGVADPDVAPDV 545

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
              ++ +  YA Y  +Q  +    +  E R IP D DYS +  LSNE  +KL+ ++P ++
Sbjct: 546 AAEVENQIKYAGYIQKQAAQVARFEKLEARRIPADLDYSEVRGLSNEAAQKLAEIRPVSV 605

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QA +I G++PA + +LL+Y+
Sbjct: 606 GQAGRISGVSPADIAVLLVYL 626


>gi|146319817|ref|YP_001199529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis 05ZYH33]
 gi|146322008|ref|YP_001201719.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis 98HAH33]
 gi|253752794|ref|YP_003025935.1| glucose inhibited division protein A [Streptococcus suis SC84]
 gi|253754619|ref|YP_003027760.1| glucose inhibited division protein A [Streptococcus suis P1/7]
 gi|253756552|ref|YP_003029692.1| glucose inhibited division protein A [Streptococcus suis BM407]
 gi|166200624|sp|A4W4N0|MNMG_STRS2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166200626|sp|A4VYE0|MNMG_STRSY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145690623|gb|ABP91129.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus suis 05ZYH33]
 gi|145692814|gb|ABP93319.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Streptococcus suis 98HAH33]
 gi|251817083|emb|CAZ52735.1| glucose inhibited division protein A [Streptococcus suis SC84]
 gi|251819016|emb|CAZ56863.1| glucose inhibited division protein A [Streptococcus suis BM407]
 gi|251820865|emb|CAR47631.1| glucose inhibited division protein A [Streptococcus suis P1/7]
 gi|292559414|gb|ADE32415.1| Glucose-inhibited division protein A subfamily [Streptococcus suis
           GZ1]
 gi|319759212|gb|ADV71154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus suis JS14]
          Length = 638

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/627 (42%), Positives = 381/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIG GHAG EA   A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMVAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN+ KGPAVR  R QAD+  Y   M+R +  QENL + Q
Sbjct: 65  IDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQADKAEYASEMKRTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVIGVRTATNQKFSAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASIT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R++ +TI ++ TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVNARTINYEDTEIQPGDEKPNHFSFLSKDEDYLLDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNATSHEIINSNLHRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD +Y  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTDEIYVQGLSTSLPEDVQQDLIHSIKGLENAQMMRTGYAIEYDMVMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R + F  +  +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN-LFSICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  PD +  + +  I P A    +  IE 
Sbjct: 485 SIKLKPIKETNEKVVAMGFKPLTDALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP D D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEVKYEGYIAKALDQVEKMKRMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGRSRSISK 631


>gi|325913679|ref|ZP_08176041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 60-B]
 gi|325477038|gb|EGC80188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 60-B]
          Length = 630

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 361/621 (58%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 RHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPHVTFDAIEKLTGKKLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|312872751|ref|ZP_07732816.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091793|gb|EFQ50172.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 630

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 RHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLDRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAIATTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKNLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|309804043|ref|ZP_07698124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163811|gb|EFO66077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 11V1-d]
          Length = 630

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 361/621 (58%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 SHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAIATTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKNLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|312869221|ref|ZP_07729393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus oris PB013-T2-3]
 gi|311095242|gb|EFQ53514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus oris PB013-T2-3]
          Length = 647

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/627 (41%), Positives = 361/627 (57%), Gaps = 9/627 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  DYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + QG V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRQMKLTIENEPNLTLRQGTV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   +V    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVVTNTGARYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++GK+I +D+TE+Q  D     FSF T   +      Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKSIQFDETEEQPGDAAPHHFSFDTPDSSYIAVTDQLAC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHGIIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKSRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEE+Q + + +I GLEK  ++RPGYAIEYD + P +L PTLETK +
Sbjct: 319 DTDEYYLDGISTSMPEEVQQKIVHSIKGLEKAELMRPGYAIEYDVVAPYQLRPTLETKLV 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 379 QNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKGPFVLGRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G + + R  +              L++
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEKGHAVGLVSDERLAKMEAKKAAVAAEIKRLET 498

Query: 481 LVLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIER 535
           +     + +           +     +A + +  P    Q L    P  A +    VIE+
Sbjct: 499 IKFKPSDEAVNDFIEEHGDNRLKDAISAADLIKRPYVDYQTLTRFIPAPAEELDRHVIEQ 558

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  +   +K  E + IP   DY+ +  L+ E ++KL  ++P  L QA
Sbjct: 559 VEIQLKYAGYIKKEEQKVDRMKRMEAKRIPDSIDYNDIDGLATEGRQKLEKIRPATLAQA 618

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA L +L +YI++      +
Sbjct: 619 SRISGVNPADLAILSVYIRQGKFSKAD 645


>gi|325291446|ref|YP_004267627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966847|gb|ADY57626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 639

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/624 (42%), Positives = 376/624 (60%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCE A  +A++G  T L+T     IG+M CNP++GG  KGHLVREIDA
Sbjct: 11  KYDVIVIGAGHAGCEGALASARMGCQTLLVTLNLDKIGNMPCNPSVGGPAKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M   AD   +Q R+LN  KGPAV   R Q+D+  Y L + + +L Q+NL ++Q  V
Sbjct: 71  LGGQMALTADDTSLQARMLNTGKGPAVHALRVQSDKRAYHLHLLKTVLQQDNLTLVQALV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  + +  IV    +     +V+LT GT+LR  I IG+     G  GD  S++L  
Sbjct: 131 QKLLIADHQVCGIVTNTGARFLAESVILTGGTYLRSRIIIGEAIYDGGPTGDLTSSALSL 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK------ITNRQI 238
                D   GR KTGTP R+   ++ + K   Q  DE    FSFM  +         +Q+
Sbjct: 191 QLQDMDVQLGRFKTGTPPRIHKNSVDYSKFALQCGDEVQRRFSFMPTESLFWGSDPEKQL 250

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  T  E H+II EN+  + +Y+G ++  GPRYCPSIEDK+VRF ER  HQ+FLEPE
Sbjct: 251 PCWLGYTTEEGHQIIRENLDRAPLYTGVVEGIGPRYCPSIEDKVVRFAERKAHQLFLEPE 310

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +++ +Y  G+ST+LPEEIQ +F  +IPGLEK  I+RPGYAIEYDY+ P +L  TLE K
Sbjct: 311 GFDSEELYVAGMSTSLPEEIQQRFFHSIPGLEKAKILRPGYAIEYDYVKPFQLSLTLELK 370

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
              GLF AGQINGT+GYEEAAAQGL+AGIN+A K    +     R+D Y+GV+IDDL +K
Sbjct: 371 DWPGLFTAGQINGTSGYEEAAAQGLLAGINAALKVRNKEAFILRRSDGYLGVLIDDLVNK 430

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            + EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K   E   +  + 
Sbjct: 431 EIKEPYRLLTSRAEYRLLLRQDNADLRLTPKGREIGLVSDERWNYFQKKKMELETITEMS 490

Query: 479 KSLVLTSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            +   ++ ++    I  K        +  A +    P+ + Q++  + P  +++ S  +E
Sbjct: 491 HNTFFSNMDIKVGEILAKAGSTSLRGSIRAEDLFKRPEINFQSVLELMPQLKEYQSDTVE 550

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
              I+  Y  Y  +Q+ E +     E+RL+P+D D++ +  LSNE +++L  ++P NL Q
Sbjct: 551 EAVIQLKYEGYISKQLEEVERFNRLEERLLPQDLDFNEVRGLSNEARQRLFEVRPLNLGQ 610

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++LLI++++   
Sbjct: 611 ASRISGVNPADISVLLIFLEQKRR 634


>gi|148266437|ref|YP_001233143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Geobacter uraniireducens Rf4]
 gi|205831514|sp|A5G9V2|MNMG_GEOUR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146399937|gb|ABQ28570.1| glucose inhibited division protein A [Geobacter uraniireducens Rf4]
          Length = 624

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/616 (48%), Positives = 386/616 (62%), Gaps = 3/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++SYDV+V+GGGHAGCEAA  AA++G  T L++     I  MSCNPAIGGL KGHLV+E
Sbjct: 4   YDKSYDVVVVGGGHAGCEAALAAARMGCCTLLLSINLDAIALMSCNPAIGGLAKGHLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +  DA GIQFR+LN KKGPAVR  R QAD++ YRL M+R +  Q+ LD+ Q
Sbjct: 64  IDALGGEMAKNIDATGIQFRILNTKKGPAVRASRAQADKQQYRLRMKRILEHQDKLDLKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E   +  +  +        T++LTTGTF+RG+IHIG    P GR GD PS  
Sbjct: 124 AEVTSLLVEDGNVVGVDTKAGVRYLGKTIILTTGTFMRGLIHIGLTHYPGGRAGDLPSVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F  GRLKTGTPARLDG+TI + + E Q+ D   IPFSF TDKIT  Q+ C 
Sbjct: 184 LSVSLEECGFKVGRLKTGTPARLDGRTIDFSRLEPQYGDNPPIPFSFSTDKITQSQVPCH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  +H II   +  S +YSG I+  GPRYCPSIEDK+VRF E++ HQ F+EPEG++
Sbjct: 244 IAYTNERSHDIIRSGLDRSPLYSGIIEGVGPRYCPSIEDKVVRFPEKDRHQTFIEPEGVD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYP+G+ST+LP ++Q  F R+I GLE+V I+RP YAIEYDY++P +L  +LETK + 
Sbjct: 304 TVEVYPSGLSTSLPIDVQWAFYRSIYGLERVEIMRPAYAIEYDYVDPIQLHASLETKVVG 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQINGT+GYEEAAAQGL+AGIN+A +    + +   R D+YIGVMIDDL + G  
Sbjct: 364 NLYHAGQINGTSGYEEAAAQGLIAGINAALRVQGKEPLILGRNDAYIGVMIDDLVTLGSK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL   G  +G + E   +RF             L+  
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLCEKGYAIGLVREEEYRRFHAKKNMIEEELQRLRQE 483

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L                      T  + L  PD   + L  I     +  + V E+++I
Sbjct: 484 KLLPSEADDVFMEEFGLTGMQNAMTYEQLLRRPDIDSRELARIDKHIMEIPAAVREQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ+ + +  +  E   IP D +Y+ LP LS E++EKL   +P  L QAS+I
Sbjct: 544 QIKYQGYIDRQLEQVERARKLESAKIPGDLEYAGLPGLSAEVREKLQQFRPDTLGQASRI 603

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+ +L I +K
Sbjct: 604 PGVTPAAITILSIALK 619


>gi|262277800|ref|ZP_06055593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [alpha proteobacterium HIMB114]
 gi|262224903|gb|EEY75362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [alpha proteobacterium HIMB114]
          Length = 619

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/616 (51%), Positives = 418/616 (67%), Gaps = 1/616 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DV+VIG GHAGCEAAA +A++  +TAL+T   ++IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   EKFDVVVIGAGHAGCEAAAASARMKVNTALVTTNENSIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG+M +VADA+GIQFR+LN  +GPAVRGPRTQ+DR+LY+  M+  ++S  NL +    
Sbjct: 62  AFDGVMPKVADASGIQFRLLNRSRGPAVRGPRTQSDRKLYKKYMKECLISHCNLSIFYDP 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F   +N I  ++++    +R   +VLTTGTFL GVIHIG    P GR G+ P+  L 
Sbjct: 122 VIQFIFNENEIVGLILKSGKELRAKKIVLTTGTFLNGVIHIGDEMKPGGRHGEDPTTGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               KF+ +  RLKTGTP RLDG+TI ++  E+Q AD+    FS  + +I   Q+ C +T
Sbjct: 182 EQLKKFNLNLSRLKTGTPPRLDGRTINFEILEEQKADDDPYFFSVDSKQINVDQVSCFMT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E H+II +N+K SA+YSG+IKS GPRYCPSIEDKIV+F +++ HQIFLEPEGL+  
Sbjct: 242 YTNDEVHKIIEKNLKRSAMYSGNIKSVGPRYCPSIEDKIVKFKDKSRHQIFLEPEGLDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP + Q + +  I GL  V +IRPGYAIEYDY++P+EL  TLE KKI  L
Sbjct: 302 TIYPNGISTSLPADAQEEILFKINGLSNVKMIRPGYAIEYDYVDPRELNATLELKKIKSL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AGIN+A +S         R+ +YIGVMIDDL +KGV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLIAGINAALQSKNKKPFILDRSQAYIGVMIDDLVTKGVAEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR DNAD RL+ I   L  + E R   F K ++  N L+  L S   
Sbjct: 422 YRMFTSRAEYRLTLRADNADLRLSSIAKDLEILSESRLLNFEKKLENINKLKVQLSSRSF 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T        I   +DG  R   E L Y   +   L  I      +   VIE+++I++ Y+
Sbjct: 482 TPNEAVKYGIKISKDGVKRNGLELLRYKGVTFDKLKPIF-GLGDYDRDVIEQIEIDNHYS 540

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q+ + +  K +E   IP++ DYS++  LSNE+++KL +++P    QAS+IEG+TP
Sbjct: 541 GYYAKQVDDIEIFKKDENMKIPENIDYSAISGLSNEIRQKLELIRPKTFGQASRIEGITP 600

Query: 604 AALNLLLIYIKKNTVK 619
           AA+NLLL Y K+   K
Sbjct: 601 AAINLLLTYSKRYNFK 616


>gi|259500782|ref|ZP_05743684.1| glucose-inhibited division protein A [Lactobacillus iners DSM
           13335]
 gi|302190767|ref|ZP_07267021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners AB-1]
 gi|259167476|gb|EEW51971.1| glucose-inhibited division protein A [Lactobacillus iners DSM
           13335]
          Length = 630

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 362/621 (58%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 SHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKKLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|167751435|ref|ZP_02423562.1| hypothetical protein EUBSIR_02431 [Eubacterium siraeum DSM 15702]
 gi|167655681|gb|EDR99810.1| hypothetical protein EUBSIR_02431 [Eubacterium siraeum DSM 15702]
          Length = 625

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/616 (44%), Positives = 377/616 (61%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  L  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQLTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIQGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYIPDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF +     +   S +K   +  
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRFLERKNILDNETSRIKKATIYP 486

Query: 486 KNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               +  +  K      +     E L  P    ++L     +A +    +I++L+I   Y
Sbjct: 487 CEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLAQFDDNAPELEHDIIDKLEINIKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I G+ 
Sbjct: 547 EGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKYRPLNIGQAGRISGVN 606

Query: 603 PAALNLLLIYI--KKN 616
           PA +++LLI++  +K+
Sbjct: 607 PADVSVLLIWLSGRKH 622


>gi|291561653|emb|CBL40452.1| glucose-inhibited division protein A [butyrate-producing bacterium
           SS3/4]
          Length = 649

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 380/649 (58%), Gaps = 32/649 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  +YD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP +GG  KGHLVR
Sbjct: 3   VVEETYDIVVVGAGHAGCEAALAAARLGFETIMFTVSVDSIALMPCNPNVGGSSKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   IQ ++LN  KGPAV   R QAD++ Y  +M+R + + ++L + 
Sbjct: 63  ELDALGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQEYTRSMRRVLENTDHLTIR 122

Query: 121 QGEVAGFNTE-----------------------KNIISSIVMQDNSMIRCSTVVLTTGTF 157
           Q EVA   TE                       K  I  +     ++ +C  VVL TG +
Sbjct: 123 QAEVAEILTEEIPGEYGTFQEEHEGHQESGYPVKKRIVGVKTYSGAVYKCRAVVLATGVY 182

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
           LR     G +  P G  G   +N L +S      +  R KTGTPAR D ++I + K E+Q
Sbjct: 183 LRARCIYGNVSNPTGPNGLQAANHLTDSLKANGIEMYRFKTGTPARADKRSIDFSKMEEQ 242

Query: 218 FADERLIPFSFMTDK--ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           F D+R++PFSF TD   +   QI C +T TN +TH II  N+  S ++SG I+  GPRYC
Sbjct: 243 FGDKRVVPFSFSTDPESVQKEQISCWLTYTNEKTHEIIRNNLDRSPLFSGAIEGTGPRYC 302

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDK+V+F ++  HQ+F+EPEGL T+ +Y  G+S++LPE++Q+   RT+PGLE V I+
Sbjct: 303 PSIEDKVVKFPDKGRHQVFVEPEGLYTNEMYLGGMSSSLPEDVQYAMYRTVPGLENVKIV 362

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R  YAIEYD INP++L  +LE K I GLF  GQ NG++GYEEAA QG +AG+N+ARK  +
Sbjct: 363 RNAYAIEYDCINPRQLKASLEFKNIDGLFSGGQFNGSSGYEEAAVQGFMAGVNAARKLQE 422

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
              +   R+ +YIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RL  IG ++G 
Sbjct: 423 KSAVVLDRSQAYIGVLIDDLVTKENHEPYRMMTSRAEYRLLLRQDNADLRLRGIGHEIGL 482

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSY 510
           + E + +      +        L+   + +       L     +  + G   T  E +  
Sbjct: 483 VSEEQYEYVLWKEKAIEEEIKRLEKATVGANEKVQEFLEKHGSTSLKSGS--TLAELIKR 540

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           P+ + + L  +     +  + V E++ I   Y  Y  RQ  +  + K  E R IP D DY
Sbjct: 541 PELNYEMLAELDEKRPELPADVREQVDINLKYDGYIRRQKQQVAQFKKLEGRKIPVDLDY 600

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +++ +L  E  +KL++ KP N+ QAS+I G++PA +++L++++++   K
Sbjct: 601 TTVGSLRREAVQKLNLYKPENIGQASRISGVSPADISVLMVHLEQMGRK 649


>gi|332703832|ref|ZP_08423920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553981|gb|EGJ51025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 630

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/615 (43%), Positives = 376/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             + +IV+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EID
Sbjct: 12  ERFALIVVGAGHAGCEAAMASARLGLPTLLLTINVDRIGHLSCNPAIGGLAKGHIVKEID 71

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG  AD AGIQFR+LN +KGPAVR  R Q DR  Y   +QR++ +Q+NL ++Q  
Sbjct: 72  ALGGRMGLWADQAGIQFRILNTRKGPAVRATRAQIDRREYMRVVQRDLFAQDNLWILQDM 131

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 +    + +            V+LTTGTFL+G+IH+G +    GRMGD  S  L 
Sbjct: 132 AEAVLVKNGRAAGVATSLGQRFASHAVLLTTGTFLQGLIHVGLMNYSGGRMGDPASVGLS 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +      + GRLKTGT  RL   +I +   E Q  D   +PFSF +  +   Q++C IT
Sbjct: 192 KNLADLGLELGRLKTGTTPRLLKGSIDFSGLEPQPGDNPPLPFSFHSPGVVLPQVDCHIT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH  I E  + S +++G IK  G RYCPSIEDK+ RF ++  HQ+F+EPEGL++ 
Sbjct: 252 YTNERTHAAIREGFERSPMFTGIIKGTGARYCPSIEDKVARFPDKERHQVFIEPEGLDSP 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYP+GI T+LP +IQ + I +IPGLE+  I+RPGYAIEYD++ P +L PTLETK + GL
Sbjct: 312 EVYPSGIPTSLPLDIQKRMIASIPGLEQAQIVRPGYAIEYDFVPPMQLQPTLETKVLPGL 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAA QGL A +N+       +     R  +Y+ VM+DDL +KG  EP
Sbjct: 372 YLAGQINGTSGYEEAAGQGLWAALNACCALRGQEPFLPGRDQAYLAVMVDDLVTKGTNEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR  NAD RLT  G +LG + + +   F+    + + L  +L+S ++
Sbjct: 432 YRMFTSRAEHRLLLREGNADARLTQAGRELGLVDDAQWATFSAKQTDISELMLILESYII 491

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +     +++    GK       L  P+ +I+ L   CP+  K++  V+   +   
Sbjct: 492 RPDAATRDILATMAATAPGKAVPLTAILRQPEVAIEALAPFCPELPKYAEGVLREAETRI 551

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ       + +E+  +P D +Y+++P LS E  EKLS ++P  L QAS+I G
Sbjct: 552 KYEGYLKRQEELVLRSRRQEETALPYDTEYAAIPGLSREAVEKLSRVRPLTLGQASRISG 611

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA++ L I++KK
Sbjct: 612 ITPAAISCLEIHLKK 626


>gi|238018229|ref|ZP_04598655.1| hypothetical protein VEIDISOL_00053 [Veillonella dispar ATCC 17748]
 gi|237864700|gb|EEP65990.1| hypothetical protein VEIDISOL_00053 [Veillonella dispar ATCC 17748]
          Length = 623

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/619 (42%), Positives = 375/619 (60%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  AA++G  T + T     I  M CNPA+GG GK HLV E+DA
Sbjct: 6   NYDVIVIGGGHAGCEAALAAARMGHRTLMATISLDNIALMPCNPAVGGPGKSHLVYELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  IQ R+LN+ KGPAV   R Q+D+  Y+  M++ I + ENL+V Q  V
Sbjct: 66  LGGQMGINADATAIQMRMLNMGKGPAVHSLRCQSDKIKYQHLMKQTIENTENLNVKQIMV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   ++ IV +         VVL TGT+L+G I IG +    G  G   +     
Sbjct: 126 TELKVEDGKVTGIVTELGEFYGAKAVVLCTGTYLKGKILIGDIDYVGGPNGQRVAEHFSQ 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S +    +  R KTGTPAR+D +T+  +  E Q  D     FSFM + I   +  C +T 
Sbjct: 186 SLLDNGIELMRFKTGTPARVDKRTLNLENMEVQEGDTHHHSFSFMDEWINRNEDVCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNKETHEIITSNIHRAPMYSGKIEGVGPRYCPSIEDKVVRFADKERHQLFVEPEGTGTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F+RTIPGLE V I+RP YAIEYD +NP +L P L+ K I GL+
Sbjct: 306 MYVQGMSTSLPMDVQYAFLRTIPGLENVEIMRPAYAIEYDCLNPTQLTPALQVKHIEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A      +    +R+++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLMAGINAALWLEGKEPFILARSEAYIGVLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G + + R  +F            +L++  + 
Sbjct: 426 RMMTSRSEYRLLLRQDNADMRLTEKGRAIGLVKDDRWAKFTAKKAAIEEAMDMLRNTPVN 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   +        RT   AY+ +   + S   +       ++++  V E + I  +
Sbjct: 486 PSKETQALLESLGTAPIRTGIHAYDLVKRNELSYAIVADAF-GLKRYTPDVEEAVDISIT 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +QM +  +++  E++++PK++DY+ +  +S E ++KL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQMDQVDKVRKLEEKILPKEWDYTQIKGISLEAQQKLNKIRPHSIGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI +++     
Sbjct: 605 SPADVSVLLIQLEQYNRSK 623


>gi|194467397|ref|ZP_03073384.1| glucose inhibited division protein A [Lactobacillus reuteri 100-23]
 gi|194454433|gb|EDX43330.1| glucose inhibited division protein A [Lactobacillus reuteri 100-23]
          Length = 647

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/629 (41%), Positives = 372/629 (59%), Gaps = 13/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  DE    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDK+VRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKVVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++   +     R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + + R  +  +  ++       L+ 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSDERLAKMEEKKRQVAAEIKRLEE 498

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVI 533
           + L   +      + +   +  +DG    A + L  P F  Q L    P   ++    VI
Sbjct: 499 IKLKPSDDKVNEFIEAHGDNRLKDGIA--AADLLKRPYFDYQTLAEFIPVPEQELDRHVI 556

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L 
Sbjct: 557 EQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETLA 616

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           QAS+I G+ PA + +L +Y+++      +
Sbjct: 617 QASRISGVNPADIAILSVYVRQGKFSKKD 645


>gi|317153203|ref|YP_004121251.1| glucose inhibited division protein A [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943454|gb|ADU62505.1| glucose inhibited division protein A [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 627

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/620 (44%), Positives = 366/620 (59%), Gaps = 3/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              S+D+IV+G GHAGCEAA  A++LG +T L+T     IG +SCNPAIGGL KGH+VRE
Sbjct: 7   FPDSFDLIVVGAGHAGCEAAMAASRLGLATLLLTISIDRIGHLSCNPAIGGLAKGHMVRE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG  ADAAGIQFR LN +KGPAVR  R Q DR  Y   +QR +  Q+NL V Q
Sbjct: 67  IDALGGMMGLWADAAGIQFRTLNTRKGPAVRSSRAQIDRAEYMRVVQRSVFGQDNLWVFQ 126

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E      +  Q    IR   V+LTTGTFL+G+IH+G      GRMGD  S  
Sbjct: 127 DTADSVLVEGGQACGVRTQLGETIRSRAVLLTTGTFLKGLIHVGLDNFSGGRMGDPASGP 186

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +        GRLKTGT  RL   ++ +D+ E Q  D+   PFSF    +   Q+ C 
Sbjct: 187 LSGNLRALGLTLGRLKTGTTPRLLKSSVDFDRMEAQPGDDPPKPFSFRNTTVPLPQVPCH 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN E H  I      S +++G I+  G RYCPSIEDK+ RF E++ HQIF+EPEGL+
Sbjct: 247 LTYTNPEAHEAIRSGFDRSPMFTGVIEGTGARYCPSIEDKVARFPEKDRHQIFIEPEGLD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYP+GI T+LP +IQ + +  I GLE   I+RPGYAIEYDY  P +L PTLETK + 
Sbjct: 307 NPEVYPSGIPTSLPLDIQKRMVAAIVGLENAQIVRPGYAIEYDYAPPTQLRPTLETKVLP 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGT+GYEEAAAQGL A +N   ++   +    +R  +Y+ V++DDL +KG L
Sbjct: 367 GLYLAGQINGTSGYEEAAAQGLWAALNVVCRATGREPFLPTRDQAYMAVLVDDLVTKGTL 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR  NAD R+TP+G  LG + +   + F    +    +   L+++
Sbjct: 427 EPYRMFTSRAEHRLLLREGNADERMTPLGRDLGLVDDEHWRLFTTKRERLQSVIEALQTI 486

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +    ++      I     GK       L  P  SIQ+L +  P        V+   + 
Sbjct: 487 RVRPDAVNRGIMERIGAAVPGKAVELAALLRQPQVSIQSLAAFHPALADMDEEVLTEAET 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q       +  E   +P D DY+++  L+ E+ EKL+ ++P  L QAS+I
Sbjct: 547 RIRYEGYLRKQEELVVRSRLLEDVSLPLDTDYATVSGLTREVVEKLTAIQPLTLGQASRI 606

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+TPAA++ L I +KK  +
Sbjct: 607 SGVTPAAISCLEIDLKKRGL 626


>gi|169825320|ref|YP_001692931.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Finegoldia magna ATCC 29328]
 gi|205831511|sp|B0S3V1|MNMG_FINM2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167832125|dbj|BAG09041.1| glucose inhibited division protein A [Finegoldia magna ATCC 29328]
          Length = 627

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/621 (40%), Positives = 369/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAGCEAA   A+LG  TA+++    ++  + CNP IGG GKGHLV+E
Sbjct: 6   YENPYDVVVVGAGHAGCEAALATARLGLKTAIMSISLDSVADLPCNPNIGGTGKGHLVKE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQ R+LN  KGPAV   R QAD+  Y   M+  + + ENLD+I+
Sbjct: 66  VDALGGEMGLVIDKTYIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKSVLENTENLDLIE 125

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N I SI     ++     V+L TGT+L+G++ +G+    +G  G   S  
Sbjct: 126 AEVVDIEVEDNKIKSITTAQGAIFPTRAVILATGTYLKGLVMMGEYTYESGPHGMKSSKK 185

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE 239
           L  S      +  R KTGTPAR+   ++ ++    Q  D+ +IPFSF+ D   I+ +Q  
Sbjct: 186 LSYSLKNLGIELRRFKTGTPARVHRDSLNYEVMTVQPGDDDVIPFSFLNDGKDISKKQEH 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T L+T +II +N++ S +Y+G +K  GPRYCPSIEDKIVRF +R+ HQ+F+EPEG
Sbjct: 246 CYLTYTTLKTKQIIEDNLERSPMYAGIVKGVGPRYCPSIEDKIVRFPDRDEHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T  +Y  G+S+ LPEE+Q +  +TI G E V  +R  Y IEYD I+P  L  TLE  +
Sbjct: 306 LSTKEMYIQGVSSTLPEEVQKEMYKTIIGFENVRFMRSAYGIEYDCIDPTILKRTLEHLE 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQING++GYEEAA QG++AGIN+A      +     R+D+YIGV+IDDL +KG
Sbjct: 366 INNLFFAGQINGSSGYEEAAGQGIIAGINAAMNLLGKEPFVLDRSDAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSR EYR++LR DNAD RLT    ++G   + R ++     +  +     LK
Sbjct: 426 TNEPYRMMTSRCEYRLTLRQDNADLRLTERAHEIGLATDERYEKMLHKKKTIDEEIERLK 485

Query: 480 SLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S+++T    ++    ++   +     T  + +  P+ +         +  +    +  ++
Sbjct: 486 SIMVTPTEETNEKLRNLGSSELKTGITLLDLIKRPELTYDKTEEFDAERTELPRYLRLQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +    Y  Y  +QM + K+ K  E R +    DY  +  LSNE  +KL+ +KP +L QAS
Sbjct: 546 ETHIKYEGYIAKQMSQIKQFKKLENRKLDMIEDYKEVMGLSNEAVQKLNDIKPESLGQAS 605

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G++P+ +N+LLIY++   
Sbjct: 606 RISGVSPSDINVLLIYMETRK 626


>gi|46580238|ref|YP_011046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|81170537|sp|Q72B11|MNMG_DESVH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46449655|gb|AAS96305.1| glucose inhibited division protein A [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233776|gb|ADP86630.1| glucose inhibited division protein A [Desulfovibrio vulgaris RCH1]
          Length = 629

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/613 (43%), Positives = 360/613 (58%), Gaps = 3/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IV+G GHAGCEAA   A++G +T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 13  YDCIVVGAGHAGCEAAMALARMGHATLLLTGNADRIGHLSCNPAIGGLAKGHMVKEIDAL 72

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y   ++R+I +Q NL V Q    
Sbjct: 73  GGMMGLWADEAGIQFRTLNSSKGPAVRATRAQIDRDAYLRVVRRDIFAQPNLRVWQDMAE 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +        R   V+LTTGTFL+G IH+G    P GR+GD+P+  L  S
Sbjct: 133 SIIVEEGRAAGVRTAYGQEFRAHHVLLTTGTFLQGRIHVGLSNFPGGRLGDAPATGLSAS 192

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +   E Q  D+   PFSF    +   Q+ C +T T
Sbjct: 193 LRAIGLELGRLKTGTTPRLLRDSIDFSMMEVQPPDDPPRPFSFRGPGVRLPQLPCHVTWT 252

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G IK  G RYCPSIEDK+ RF E+  HQ+F+EPEGL +   
Sbjct: 253 NERTHEAIRAGFDRSPMFTGVIKGTGARYCPSIEDKVARFPEKERHQVFVEPEGLESPEC 312

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGI T+LP E+Q   I TIPGLE   I+RPGYAIEYDY +P +L  TLETK + GL+L
Sbjct: 313 YPNGIPTSLPLEVQKAMIATIPGLENAQIVRPGYAIEYDYADPVQLRSTLETKALRGLWL 372

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N +     +      R  +Y+ V++DDL +KG  EPYR
Sbjct: 373 AGQINGTSGYEEAAAQGLWAALNVSCTLRSMPPFLPGRDTAYMAVLVDDLVTKGTREPYR 432

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD RLT  G  LG + +   + F+      + L   L++  +T 
Sbjct: 433 MFTSRAEHRLLLRENNADARLTETGRALGLVDDTHWQLFSTKRAALHSLLDELENRRITP 492

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +    + +      K  +  + L  P  ++ +L        +F+  V E  +    Y
Sbjct: 493 DAAARDIFSRLGEPAPTKGVSLADILRRPSLTLPDLAPFWEGVTRFADDVREEAETIVKY 552

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ          E  ++P+D DY+ +P L+ E+ EKL  ++P  L QA++I G+T
Sbjct: 553 SGYLARQQELVARSARMEDTVLPEDMDYTVIPGLTREIVEKLGKVRPHTLGQAARISGVT 612

Query: 603 PAALNLLLIYIKK 615
           PAAL  L I ++K
Sbjct: 613 PAALTCLEIQLRK 625


>gi|158335338|ref|YP_001516510.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Acaryochloris marina MBIC11017]
 gi|189039326|sp|B0BZY6|MNMG_ACAM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158305579|gb|ABW27196.1| glucose-inhibited dvision protein A [Acaryochloris marina
           MBIC11017]
          Length = 635

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/615 (42%), Positives = 378/615 (61%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            ++VIV+G GHAGCEAA  +A++G ST L+T     I    CNPA+G   K  L  E+DA
Sbjct: 12  EFEVIVVGAGHAGCEAALASARMGCSTLLLTLNLDKIAWQPCNPAVGAPAKSQLTHEVDA 71

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q NL V +G V
Sbjct: 72  LGGEIGKMADRTYLQKRLLNHSRGPAVWALRAQTDKREYAAVMKTIVENQGNLTVREGMV 131

Query: 125 AGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + + +  +        RC  V+LTTGTFL G I +G   +PAGR G+  +  L 
Sbjct: 132 TDLVLGDNDEVVGVQTYFGVAFRCQAVILTTGTFLGGRIWVGDKSMPAGRAGEFAAEGLT 191

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  +  F+TGRLKTGTPAR+D ++  +   E Q  D+++  FSF     I   Q+ C I
Sbjct: 192 ETLNQLGFETGRLKTGTPARVDKRSADFSVMEPQPPDQQVRWFSFDPAVWIEREQMNCYI 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG + 
Sbjct: 252 TRTTPETHQLIQDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKASHQIFIEPEGRDI 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q + +R++PGLE   ++RP YA+EYDY+   + +PTL TK+I G
Sbjct: 312 PELYIQGFSTGLPEALQLRMLRSLPGLEHCAMLRPAYAVEYDYLPATQCYPTLMTKRIEG 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG+VAGIN+AR+ N+ + + F R +SYIG +IDDL +K + E
Sbjct: 372 LFCAGQINGTTGYEEAAAQGIVAGINAARRVNQQEMLIFPRAESYIGTLIDDLCTKDLRE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM T R+EYR+ LR DNAD RLTP+G ++G I +RR   F +        +  L +  
Sbjct: 432 PYRMLTGRSEYRLLLRSDNADQRLTPLGREVGLIDDRRWHLFTRKQATITAEKERLHATR 491

Query: 483 LTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L  ++ ++ +I   + ++   + T  + L  P F   +L               E ++IE
Sbjct: 492 LKERDPAAQAIVQTTGEKIKGSITLSDLLRRPKFHYCDLQQHGLGIETLERSERESVEIE 551

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  + +++  +E+R +P++ DY+S+  LS E +EKL+ ++P  + QAS+I 
Sbjct: 552 IKYAGYIQRQQRQIEQVSRQEQRKLPENIDYASIETLSMEAREKLAKVRPLTVGQASRIG 611

Query: 600 GMTPAALNLLLIYIK 614
           G+ P+ +N LL Y++
Sbjct: 612 GVNPSDINALLFYLE 626


>gi|306821810|ref|ZP_07455405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550177|gb|EFM38173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 626

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/615 (42%), Positives = 381/615 (61%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCE+A  AA++G +T +IT    ++G + CNP+IGG GKGHLV+EIDA
Sbjct: 7   NYDVIVVGAGHAGCESALAAARMGLNTLIITLSLESVGYLPCNPSIGGTGKGHLVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN  KGPAV   R Q D++ YR  M++ +  Q+NLD+   EV
Sbjct: 67  LGGQMGISADKTFIQSRMLNTSKGPAVHSLRVQCDKDKYRAYMKKVLEDQKNLDIKMDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  + +  +V +  +      V++ TG +L   ++IG++   +G +G + +  L  
Sbjct: 127 VEILASDDKVDGVVTKLGAKYGAKAVIIATGVYLDSKVYIGEVNFKSGPLGLTGAYELSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           S  K   +  + KTGTPAR+   +I + K   Q  DE++ PFSF+ +   I   QI+C +
Sbjct: 187 SIEKLGIEMRKFKTGTPARIHQDSIDFTKMTLQEGDEKITPFSFINEGEYIGENQIDCYL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           TRTNL+TH II EN+  S+++ GD+ +  G RYCPSIEDK+ RF +++ HQ F+EPEGL+
Sbjct: 247 TRTNLKTHGIINENLNRSSLFRGDMDAIAGARYCPSIEDKVTRFADKSSHQFFVEPEGLD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y  G S++L  E+Q +  RT+ GLE   ++RP YAIEYD I+P +L  TLETKKIS
Sbjct: 307 TKEYYIQGFSSSLAYEVQLEMYRTVAGLENCRMMRPAYAIEYDCIDPMQLKMTLETKKIS 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQ+N T+GYEEAAAQG+VAGIN+A K      +  +R +SYIGV+IDDL +KG  
Sbjct: 367 GLYFAGQMNSTSGYEEAAAQGIVAGINAAAKIQGKAEMILTRDNSYIGVLIDDLVTKGTN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R  +F K  +        LK+ 
Sbjct: 427 EPYRIMTSRAEYRLLLRQDNADERLTQIGRDMGLVDDERYDKFIKKYKNIEKEIQRLKNE 486

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            +    ++   T IS  +  ++ + YE L  P+ +   L        + S+ +  R +IE
Sbjct: 487 KIKPIQINEKLTEISESELSQSISLYELLKRPNVTYAFLEENGFGNDEISNEIKLRCEIE 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           S Y  Y  +Q ++ +  K  E + +    DY  +  L  E ++KL  +KP N+ QAS+I 
Sbjct: 547 SKYEGYIKKQRLQVENFKNLENKKLSSAIDYEQIKGLRLEARQKLMTIKPENIGQASRIS 606

Query: 600 GMTPAALNLLLIYIK 614
           G++P+ +++LL+Y++
Sbjct: 607 GVSPSDISVLLVYLQ 621


>gi|237823657|pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 gi|237823658|pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
 gi|237823659|pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823660|pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823661|pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
 gi|237823662|pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
          Length = 637

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 390/618 (63%), Gaps = 16/618 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EAA  AA++GA TA+      TIG MSCNPAIGG+ KG +VREIDA
Sbjct: 27  EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDA 86

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D  GIQF++LN +KG AV+ PR QAD++ YR  M++   +QENL + Q EV
Sbjct: 87  LGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEV 146

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +        +   VV+TTGTFL GVI+IG   IP GR+G+  S  L +
Sbjct: 147 VDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSD 206

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-------NRQ 237
            + +FDF   R KTGTPARLD +TI +   E    D+    FSF T+ +          Q
Sbjct: 207 FYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQ 266

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDKIV+F ++  HQIFLEP
Sbjct: 267 VNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T  +YPNG+ST+LPEE+Q +  R+IPGLE V +IRP YAIEYD + P EL+PTLET
Sbjct: 327 EGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMIDDLT+
Sbjct: 387 KKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTT 446

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSR+EYR+ +R DNA  RL  +G +LG + E + K   +  +E    +  
Sbjct: 447 KGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEF 506

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            KS           S++   D ++ +    ++  ++++ ++             V E ++
Sbjct: 507 YKS--------ERVSVAVGGDTRSYSVATLMTM-NYTLDDVKEKFGYEVPQHPYVKEEVE 557

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  R+    +++K  E   IP D DY  +P L+ E +EKL   KP  + QAS+
Sbjct: 558 IQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASR 617

Query: 598 IEGMTPAALNLLLIYIKK 615
           I+G+TPAA+  LL+Y+ K
Sbjct: 618 IDGITPAAITALLVYLGK 635


>gi|268680449|ref|YP_003304880.1| glucose inhibited division protein A [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618480|gb|ACZ12845.1| glucose inhibited division protein A [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 624

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/622 (47%), Positives = 387/622 (62%), Gaps = 5/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EA+  AA+LG  T LI+     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   KYDVIVIGGGHAGIEASLAAARLGNKTLLISILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D AGIQFR LN+ KGPAVRG R Q D + YR+ M+  IL+ ENL V Q   
Sbjct: 62  LGGQMALATDNAGIQFRTLNLSKGPAVRGSRAQIDMDRYRIYMRTIILNTENLYVAQEMA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++  ++ ++ Q  +      V+LTTGTFL G+IHIG+ +  AGR+G+ PS +L  
Sbjct: 122 ETLVAQEGKVTGVITQFGNHYHAPKVILTTGTFLNGLIHIGEFQQEAGRVGEFPSRTLSE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--IECGI 242
           S        GRLKTGT AR+D K+I + K E Q  DE  +PFSF T + T +   + C I
Sbjct: 182 SIKSLGITMGRLKTGTCARIDAKSIDFSKMELQPGDENPLPFSFRTTRETFKPFQLPCYI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH +I  N   + +++G I   GPRYCPSIEDKI RF ++  H +F+EP+    
Sbjct: 242 TYTNEDTHTLIESNFHRAPLFTGQISGIGPRYCPSIEDKINRFRDKERHHLFIEPQTREA 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG +T+LP + Q   I ++ G+E   I+R GYAIEYDY++P EL  +LETKKI G
Sbjct: 302 TEYYINGFATSLPTDTQLNMIHSVEGMENARIVRYGYAIEYDYVDPTELKHSLETKKIEG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AGIN++      + + F R ++YIGV+IDDL +KG  E
Sbjct: 362 LYCAGQINGTTGYEEAAAQGLMAGINASLALRDEEPLIFRRDEAYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL P G KLG I E+  ++  K  +E N   + L++  
Sbjct: 422 PYRMFTSRAEYRLLLREDNADLRLMPYGYKLGLIDEQTHQKMVKKRKELNEGVAYLEATT 481

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           LT  N ++    SI   +     T  + ++  +FSI+ L  I P  + F+    E++ IE
Sbjct: 482 LTPSNENNAFLASIGEDKITDKVTLQKIVARSEFSIEKLEKIAPCVQNFTEEAKEQILIE 541

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y  Y  +Q  +   +K      IP   D+SS+  LSNE+ EKL    P  L  AS+I 
Sbjct: 542 AKYKNYIEKQKEQIDIMKEMMDVKIPPMMDFSSISGLSNEVVEKLQRFNPPTLFAASEIS 601

Query: 600 GMTPAALNLLLIYIKKNTVKLN 621
           G+TPAAL++L +YIK    K N
Sbjct: 602 GITPAALDILHVYIKFFNKKNN 623


>gi|309805920|ref|ZP_07699952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
 gi|312873295|ref|ZP_07733350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2052A-d]
 gi|308167696|gb|EFO69843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
 gi|311091175|gb|EFQ49564.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2052A-d]
          Length = 630

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 RHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLHKKEAITTTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKNLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|284928804|ref|YP_003421326.1| glucose-inhibited division protein A [cyanobacterium UCYN-A]
 gi|284809263|gb|ADB94968.1| glucose-inhibited division protein A [cyanobacterium UCYN-A]
          Length = 633

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/627 (43%), Positives = 372/627 (59%), Gaps = 9/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GH+GCEAA   ++LG  T ++T     +    CNPAIGG  K  L  E
Sbjct: 9   FQDEFDVIVVGAGHSGCEAALATSRLGCKTLMLTLNLDRVAWQPCNPAIGGPAKSQLAHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+V D   +Q R+LN  +GPAV   R Q D+  Y  AM+  I +QENL++ +
Sbjct: 69  VDALGGEIGKVTDLTYLQKRILNASRGPAVWALRAQVDKREYSAAMKAIIENQENLNIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V        + I  +     S      V+L TGTFL G I IG   + AGR G+ PS 
Sbjct: 129 GMVTDLVLGRNDEIRGVQTYFGSCFAAKAVILATGTFLGGQIWIGDKSMDAGRAGEFPSI 188

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
           +L N+  +  F+T RLKTGTPAR+D +++ + + E Q  D+ L  FSF  +  I   Q+ 
Sbjct: 189 NLTNTLKQLGFETERLKTGTPARIDKRSVDYSQLEPQPPDKNLKWFSFDPNFWIEKEQMN 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH++I +N+  S IY G +KS GPRYCPSIEDKIVRF ++N HQIF+EPEG
Sbjct: 249 CYLTRTTPETHKLIQDNLHLSPIYGGFVKSKGPRYCPSIEDKIVRFADKNSHQIFIEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T  +Y  G ST LPE IQ   ++T+PGLEK  ++RP YA+EYD++   +  PTL TKK
Sbjct: 309 RETPELYVQGFSTGLPENIQSAMLKTLPGLEKCVMLRPAYAVEYDFLPATQCKPTLMTKK 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQG+VAGIN+A+     + I FSR DSYIG +IDDL +K 
Sbjct: 369 IEGLFCAGQINGTTGYEEAAAQGIVAGINAAKFIKNEEMIIFSREDSYIGTLIDDLCTKD 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I   R   F K  +     +  L 
Sbjct: 429 IREPYRMLTSRSEYRLILRSDNADERLTPLGRRIGLIDNYRWHLFQKKQKNILEEKIRLS 488

Query: 480 SLVLTSKNLSSTSISFKQDGK-----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            + +  K+     I   +D +       T  + L  P    +NL          +    E
Sbjct: 489 KVRIKEKD--EIGIRLIKDTQQNIKGAITLADLLKRPKIHYKNLEQYGLGNNNLTVGEKE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++I   Y+ Y  RQ  + +++K    R +P D DY ++  LS E +EKL+ + P  + Q
Sbjct: 547 GVEINIKYSGYLKRQQNQLEQVKRYSDRNLPTDIDYMNIETLSMEAREKLTKVSPLTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLN 621
           AS+I G++PA  N LLIY++  + +  
Sbjct: 607 ASRIGGVSPADTNALLIYLEIKSRQNT 633


>gi|309804868|ref|ZP_07698930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 09V1-c]
 gi|309809721|ref|ZP_07703575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312871148|ref|ZP_07731246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 3008A-a]
 gi|312874789|ref|ZP_07734808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912328|ref|ZP_08174725.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 143-D]
 gi|308165807|gb|EFO68028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 09V1-c]
 gi|308169900|gb|EFO71939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311089534|gb|EFQ47959.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093162|gb|EFQ51508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LEAF 3008A-a]
 gi|325475987|gb|EGC79156.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners UPII 143-D]
          Length = 630

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 361/621 (58%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 RHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F +  +        +KS
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGYNLGLISEERYQEFLRKKEAIATTMKNIKS 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKKLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|92115737|ref|YP_575466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Nitrobacter hamburgensis X14]
 gi|122418936|sp|Q1QRZ1|MNMG_NITHX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91798631|gb|ABE61006.1| glucose inhibited division protein A [Nitrobacter hamburgensis X14]
          Length = 624

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/625 (53%), Positives = 434/625 (69%), Gaps = 1/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIVIGGGHAGCEAA  AA++GA TAL+TH+ ST+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTASFDVIVIGGGHAGCEAATAAARMGARTALVTHRLSTVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFR+LN +KGPAVRGPR Q DR+LY  AMQ EI    NL VI+
Sbjct: 61  IDALDGLMGRVADAAGIQFRMLNRRKGPAVRGPRAQEDRKLYAAAMQAEIREAANLVVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE          I+ I + D+   +   VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADDLIVADGRIAGIRLIDSRAFKTGAVVVTTGTFLRGLIHLGEKSWPAGRVDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTP RLDG TI W   E Q  D+   PFS MT +IT  QI CG
Sbjct: 181 LSVSFERIGFTLGRLKTGTPPRLDGATIDWAAVEMQPGDDPPEPFSVMTSRITTPQIRCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S IYSG I+S GPRYCPS+EDK+VRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTMPATHEVIRANVHRSPIYSGQIRSSGPRYCPSLEDKVVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGL KV +IRPGYAIEYD+++P+EL PTL+T+++ 
Sbjct: 301 DTTVYPNGISTSLPEEVQLAILATIPGLTKVRMIRPGYAIEYDHVDPRELDPTLQTRRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D + F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDPVVFDRADGYLGVMIDDLVTRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ +GC+G  R       +   +  ++L  SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGIAMGCVGAGRAVHHRAKMAALSAAKALATSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG  R+A+E L+YP+     + +I P+       V   L+I++ 
Sbjct: 481 SVTPNEAARYGLSLNRDGHRRSAFELLAYPEIGWGEVAAIWPELSAIDPGVAVHLEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  ++  D DY ++P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YDVYLKRQTADVEAFRRDESLVL-ADVDYDAVPGLSNEARARLERARPRTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVKLNEIVLV 626
           TPAAL +L  Y+++   K       
Sbjct: 600 TPAALGILAAYLRREARKKTATASA 624


>gi|282891142|ref|ZP_06299646.1| hypothetical protein pah_c047o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498959|gb|EFB41274.1| hypothetical protein pah_c047o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 612

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/616 (45%), Positives = 392/616 (63%), Gaps = 15/616 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + YDVIV+GGGHAGCEAA  A+ +GA T L+T    TIG MSCNPAIGG+ KGH+VRE
Sbjct: 4   FPKKYDVIVMGGGHAGCEAAFAASGMGAQTLLLTMNLDTIGKMSCNPAIGGIAKGHIVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG+V D  GIQ+R+LN  +GP+V  PR QAD+  Y++ ++  +  Q NL++ Q
Sbjct: 64  IDALGGIMGKVTDVTGIQYRMLNSTRGPSVWAPRAQADKNAYQMEVKYRLEKQPNLEIKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G +     E + I  ++ ++  +   ST+++++GTFLRG++HIG+     GR GD PS  
Sbjct: 124 GTIEDLIVENDRIQGVITKEGIIYYTSTLIISSGTFLRGLLHIGETNYSGGRAGDQPSVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           L  S  KF F  GRLKTGTP R++ ++I +  TE+Q  D   + FSF   ++    Q+ C
Sbjct: 184 LSASLEKFGFKLGRLKTGTPPRVNRRSIDFSLTEEQPGD-PNVKFSFDEVERPRLPQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T  ET +II+ NI  S +YSG IK  G RYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 243 HITYTTEETKQIILANIHRSPMYSGQIKGIGTRYCPSIEDKVVRFSDKERHQIFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y NG+S++LP ++Q  FI++IP L    I+RP YAIEYDY+   ++  +LET  +
Sbjct: 303 QTEEIYVNGVSSSLPFDVQLAFIQSIPALRNAEIMRPAYAIEYDYVTSGQMTASLETTHL 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAA QGL+AGIN+A K+     +  SR+++YIGVMIDDL +K +
Sbjct: 363 EGLFLAGQINGTSGYEEAAGQGLIAGINAASKALSQPPLILSRSEAYIGVMIDDLITKKL 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RL   G + G I   +  R     +      + L  
Sbjct: 423 DEPYRMFTSRAEHRLLLRQDNADLRLRHYGYEKGIINTEQYARLQHKKKMMQEETARLGK 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIE 539
           +    K L+         GK  +  + L  P+ + Q+L +  PD        +  +++++
Sbjct: 483 VF---KQLN---------GKGYSLAQLLCRPEITYQSLLNDYPDDVIDHGEDINMQIELD 530

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
            SYA Y  RQ  E  + +  E   IP+ FD+SS+  L NE KEKL    PF L QAS+I 
Sbjct: 531 LSYAGYIERQKGEVAKFEHLENIRIPEKFDFSSVSGLRNEAKEKLKKHFPFTLGQASRIS 590

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +++L+I + K
Sbjct: 591 GVSPADISILMIALAK 606


>gi|116334861|ref|YP_796388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus brevis ATCC 367]
 gi|122268460|sp|Q03N65|MNMG_LACBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116100208|gb|ABJ65357.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus brevis ATCC 367]
          Length = 636

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 354/623 (56%), Gaps = 8/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREID
Sbjct: 10  QDYDVIVVGAGHAGSEAALAAARMGNRTLLMTINLDMVAFMPCNPSVGGPAKGIVVREID 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q R+LN  KGPAVR  R QAD+  Y   M+  I  + NL + QG 
Sbjct: 70  ALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKHTIEREPNLTLRQGI 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E      ++    +  R   VV+  GT  RG I IG+L   +G     P+  L 
Sbjct: 130 VDDLIVEDGECQGVITNTGARYRAKAVVIAAGTAARGKIIIGELMYSSGPNNSQPATKLT 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
            +  K+ FD  R KTGTP R+DG TI +D+TE+Q  D     FSF T          Q+ 
Sbjct: 190 ANLPKYGFDLERFKTGTPPRVDGNTIHYDETEEQPGDVEPNHFSFTTPDSAYLDLKNQLS 249

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  + +++G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 250 CWLTYTNEKTHEIIKANLDRAPMFTGVIEGVGPRYCPSIEDKIVRFADKPRHQLFLEPEG 309

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             TD  Y  G+ST++PEE+Q + + +I GLE   ++RPGYAIEYD ++P +L PTLETK 
Sbjct: 310 RKTDEWYVQGLSTSMPEEVQQKILHSIKGLEDAQMMRPGYAIEYDVVSPYQLRPTLETKP 369

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ NGT+GYEEAA QGL+AGIN+  ++         R+D+YIGVM+DDL +KG
Sbjct: 370 LKNLFTAGQTNGTSGYEEAAGQGLLAGINAGLRALGKPGFTLKRSDAYIGVMVDDLVTKG 429

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I + R   F             L 
Sbjct: 430 TKEPYRLLTSRAEYRLILRHDNADLRLTAKGHELGLISDERYADFLAKKATLQAELDRLN 489

Query: 480 SLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
            + +   +  +  +    D   +    A  FL  P    Q L        +     +IE 
Sbjct: 490 QIRIKPNDEINAFVESHGDKPLQDGVLAAAFLRRPYVDYQTLLQFIDAPEQPLDRHIIEE 549

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  +      ++K  E + IP   DY ++  L+ E  +KL  ++P  L QA
Sbjct: 550 IEISLKYAGYIKKAEENVAKLKRMEAKAIPAQIDYDAIDGLATEAHQKLKKIQPETLAQA 609

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G+ PA + +L +YI++  +
Sbjct: 610 SRISGVNPADIAILSVYIEQGKI 632


>gi|15606146|ref|NP_213523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aquifex aeolicus VF5]
 gi|3913739|sp|O66962|MNMG_AQUAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2983328|gb|AAC06917.1| glucose inhibited division protein A [Aquifex aeolicus VF5]
          Length = 617

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/618 (46%), Positives = 390/618 (63%), Gaps = 16/618 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EAA  AA++GA TA+      TIG MSCNPAIGG+ KG +VREIDA
Sbjct: 7   EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D  GIQF++LN +KG AV+ PR QAD++ YR  M++   +QENL + Q EV
Sbjct: 67  LGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +        +   VV+TTGTFL GVI+IG   IP GR+G+  S  L +
Sbjct: 127 VDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-------NRQ 237
            + +FDF   R KTGTPARLD +TI +   E    D+    FSF T+ +          Q
Sbjct: 187 FYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQ 246

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDKIV+F ++  HQIFLEP
Sbjct: 247 VNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEP 306

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T  +YPNG+ST+LPEE+Q +  R+IPGLE V +IRP YAIEYD + P EL+PTLET
Sbjct: 307 EGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLET 366

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMIDDLT+
Sbjct: 367 KKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTT 426

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSR+EYR+ +R DNA  RL  +G +LG + E + K   +  +E    +  
Sbjct: 427 KGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREIEKWKEF 486

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            KS           S++   D ++ +    ++  ++++ ++             V E ++
Sbjct: 487 YKS--------ERVSVAVGGDTRSYSVATLMTM-NYTLDDVKEKFGYEVPQHPYVKEEVE 537

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  R+    +++K  E   IP D DY  +P L+ E +EKL   KP  + QAS+
Sbjct: 538 IQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASR 597

Query: 598 IEGMTPAALNLLLIYIKK 615
           I+G+TPAA+  LL+Y+ K
Sbjct: 598 IDGITPAAITALLVYLGK 615


>gi|239946969|ref|ZP_04698722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921245|gb|EER21269.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 622

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/611 (52%), Positives = 430/611 (70%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAATSARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI ++ LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKTLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTINYSKTILQPGDKIPRPFSELTNVVNVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++Q++ I+TI GLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQYKLIKTILGLENAKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +GM +G + E+R+K F K  ++    +SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGMNIGVVSEKRKKIFTKKCEDIEKTKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPATIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|291531940|emb|CBK97525.1| glucose-inhibited division protein A [Eubacterium siraeum 70/3]
          Length = 625

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/616 (44%), Positives = 377/616 (61%), Gaps = 5/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA+LG  TA+ T     I +M CNP IGG  KG LVRE+D+L
Sbjct: 7   YDVIVVGAGHAGCEAALAAARLGCKTAVFTLSLDAIANMPCNPCIGGSAKGQLVRELDSL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  IQ R+LN  KGPAV   R Q+DR  Y   M+  +   ENLD+ Q EV 
Sbjct: 67  GGEMGRAADATFIQSRMLNKGKGPAVHSLRVQSDRVKYHTFMKSVLEHTENLDIKQAEVT 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   I+ I  +  +      V++TTGT+L G IHIG+L   +G    S +  +  S
Sbjct: 127 EVCAENGKITGIKTRLGAFYPAGCVIITTGTYLGGKIHIGELNYQSGPDNVSAALQMTES 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTPAR+  ++I +   E+Q  DE + PF F        +++C +T T
Sbjct: 187 LRNLGLSMRRFKTGTPARVHKRSIDFSVMEEQDGDEYITPFCFDNTFKLENKVKCYVTYT 246

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETHRII++N+  S +Y+G I+  GPRYCPSIEDKIVRF ++  HQ+F+EP GL+TD  
Sbjct: 247 NAETHRIILDNLDRSPLYAGRIQGVGPRYCPSIEDKIVRFSDKPRHQLFVEPMGLDTDEY 306

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+S++LPE++Q +F+RTI GLE V I+RP YAIEYD  +P EL+PTLE KKISGLF 
Sbjct: 307 YLQGMSSSLPEDVQIKFLRTIKGLEHVEIMRPAYAIEYDCCDPLELYPTLEFKKISGLFG 366

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ N T+GYEEAAAQG++AG+N+A K    +     RT S+IG +IDDL +KG +EPYR
Sbjct: 367 AGQFNCTSGYEEAAAQGVIAGMNAAMKIKGREQYISDRTTSFIGTLIDDLVTKGCVEPYR 426

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR+EYR+ LR DNA++RL PIG K G I + R +RF +     +   S +K   +  
Sbjct: 427 MMTSRSEYRLLLRQDNANDRLVPIGHKFGLISDERYQRFLERKNILDNETSRIKKATIYP 486

Query: 486 KNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               +  +  K      +     E L  P    ++L     +A +    +I++L+I   Y
Sbjct: 487 CEELNKMLESKGTSPITQGVKFIELLKRPQIDYRDLARFDENAPELEHDIIDKLEINIKY 546

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K  E++ +P D DY ++  L  E +EKL+  +P N+ QA +I G+ 
Sbjct: 547 EGYIKTQTEKIEQMKRLEEKQLPTDIDYKTISGLRLEAQEKLNKHRPLNIGQAGRISGVN 606

Query: 603 PAALNLLLIYI--KKN 616
           PA +++LLI++  +K+
Sbjct: 607 PADVSVLLIWLSGRKH 622


>gi|254420248|ref|ZP_05033972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas sp. BAL3]
 gi|196186425|gb|EDX81401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brevundimonas sp. BAL3]
          Length = 630

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/611 (54%), Positives = 428/611 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIGGGHAGCEAAA +++ GA T L+T K  TIG MSCNPAIGGLGKGHLVREIDA
Sbjct: 8   SYDVVVIGGGHAGCEAAAASSRAGARTLLLTQKLETIGEMSCNPAIGGLGKGHLVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G  
Sbjct: 68  LDGIMGRLADVSGIQFRLLNRSKGAAVRGPRSQIDRRLYREAMQAELARTPNLSLMAGTA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   + + +  +       +R   VVLTTGTFL GVIH G  +IPAGR G+ PS  L  
Sbjct: 128 EGLILDGDRVVGVTTGTGERVRAGAVVLTTGTFLNGVIHRGDERIPAGRHGEDPSTGLAA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                D   GRLKTGTPARLDG+TI WD+ E Q ADE    FSFMTD+I   QI CG+T 
Sbjct: 188 DLHAADLMMGRLKTGTPARLDGRTIAWDRLEMQQADETPSAFSFMTDRIDVPQIACGVTH 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII EN+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   
Sbjct: 248 TTEETHRIIAENLGESAVYGGKLSGRGPRYCPSIEDKVVRFADKTSHQIFLEPEGLDDPT 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST++ E  Q  F+RTIPGLE V + R GYAIEYDY++P+EL P LE KK  GL+
Sbjct: 308 VYPNGISTSVSEPTQLAFLRTIPGLEAVEVFRYGYAIEYDYVDPRELSPALEVKKRPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AG+N+AR + +   +   R  +YIGVMIDDL ++GV EPY
Sbjct: 368 LAGQINGTTGYEEAAAQGLMAGLNAARTAGEDAPVILGRDQAYIGVMIDDLVTRGVTEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR++LR DNAD RLTP+ + LG +G  R+K F    Q+ +    + +  + T
Sbjct: 428 RMFTSRAEYRLTLRADNADQRLTPLAIALGIVGPERRKCFELKAQKLSEAGIVSRETLFT 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K  ++  I    DG+ R+  E L++PD ++ +     P    + + V E+++I++ YA 
Sbjct: 488 PKEANAIGIPVNADGRRRSMRELLAFPDVTLDHFVQTHPVVASWDAEVREQVEIDAGYAN 547

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ+I+A+ ++ EE  L+P D DY+++ +LSNE+KEKL+ ++P  L QA +IEGMTP 
Sbjct: 548 YLDRQLIDAEALRTEEGLLLPTDLDYAAIGSLSNEVKEKLARVQPRTLGQAGRIEGMTPG 607

Query: 605 ALNLLLIYIKK 615
           AL  LL ++K+
Sbjct: 608 ALTALLAHVKR 618


>gi|114568075|ref|YP_755229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317084|sp|Q0ATU6|MNMG_SYNWW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114339010|gb|ABI69858.1| glucose inhibited division protein A [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 624

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/625 (41%), Positives = 379/625 (60%), Gaps = 7/625 (1%)

Query: 1   MINR--SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           MI +  SY+VIVIG GHAGCEAA  +A++G  T L+T     I  M CNP+IGG  K  +
Sbjct: 1   MIYKAGSYEVIVIGAGHAGCEAALASARMGCQTLLVTMSIDHIALMPCNPSIGGPAKAQV 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           VREIDAL G M    D A +Q R +N  KGPAV+  R QAD+  Y L M + + +Q+ LD
Sbjct: 61  VREIDALGGEMALNIDKANVQIRTINTGKGPAVQALRAQADKRQYHLEMLKTLFNQKKLD 120

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           ++  EV         + +IV +  +   C  +VLTTGT+L+G I +G +    G     P
Sbjct: 121 ILMAEVEDIELSAGRVKAIVTRTGARFECQALVLTTGTYLKGRIIVGDISFDGGPGNQFP 180

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +  L  S  +     GR KTGTP R+D K++ + K  +Q  D+R + FSF++  I   Q+
Sbjct: 181 AARLSESLKRMGLRLGRFKTGTPPRIDSKSVDFSKMIEQPGDKRPLRFSFISPLINRPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T +N +TH+I+M N+  + +Y+G IK  G RYCPS EDK+VRF  ++ HQ+F+EPE
Sbjct: 241 PCWLTHSNKKTHQIVMNNLDRAPMYTGIIKGIGTRYCPSFEDKVVRFSHKDSHQLFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +TD +Y  G++T+LPE++Q + +++IPGLE V I+R GYAIEYD I P +L  +LE K
Sbjct: 301 GRDTDEMYVQGLNTSLPEDVQIEVLKSIPGLENVRIMRTGYAIEYDIIYPSQLKLSLECK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GLF AGQINGT+GYEEAAAQGL+AGIN+A +  + +     R+++YI VMIDDL +K
Sbjct: 361 TVEGLFTAGQINGTSGYEEAAAQGLIAGINAALQVKEKEPFILKRSEAYIAVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            ++EPYR+ TSRAEYR+ LR DNAD RLT  G ++G + + R   + +  +      + L
Sbjct: 421 EIVEPYRLLTSRAEYRLLLRQDNADLRLTEKGRQIGLVDDNRWMAYQQKEEILEVESNEL 480

Query: 479 KSLVLTSKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           K    T  +         ++        + +E L  P+ SI +        R     ++E
Sbjct: 481 KFSSFTPADEEMADFLSGKNTAAIRDRVSLWELLRRPELSIYDYVEKG-WLRDNDPDILE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +L+I++ Y  Y  +Q  + K  +  E ++IP D +Y  +  LS E  +KL I+ P ++ Q
Sbjct: 540 QLEIQAKYEGYIEKQKEQVKRFEKLENKMIPPDINYDEVYGLSQEAVQKLKIILPASVGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           AS+I G+ PA +N+LLI+++K   K
Sbjct: 600 ASRIAGVNPADINVLLIFLEKKRRK 624


>gi|83942028|ref|ZP_00954490.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
 gi|83847848|gb|EAP85723.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
          Length = 620

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/619 (52%), Positives = 431/619 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA+TALIT     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGANTALITMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  M  E   Q+NL +++GE
Sbjct: 62  ALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRAIYRKEMLAETERQKNLTIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S  V+ D   I  + VVLTTGTFLRGVIHIG +    GRMGD  S  L 
Sbjct: 122 VTDFILDNGKVSGAVLADGEQIAAAEVVLTTGTFLRGVIHIGDVSRSGGRMGDKASVDLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F+   GRLKTGTP RLDG+TI W+K E Q  D+  + FSF+++  +  QI CGIT
Sbjct: 182 KRIDSFNLPLGRLKTGTPPRLDGRTIDWEKLESQPGDDEPVLFSFLSEATSAPQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ETH+II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG +  
Sbjct: 242 HTNEETHQIIRDNLSRSAMYGGHIDGVGPRYCPSIEDKVVRFADKTSHQVFLEPEGADDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPE++Q  ++R++ GLE V II+PGYAIEYDY++P+ L   L  + + GL
Sbjct: 302 TIYPNGISTSLPEDVQLAYVRSMVGLENVEIIQPGYAIEYDYVDPRALDLALSVRTVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR DSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVTFSRADSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ + LGC+ + R   F   + + +   + L     
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIALGCVSQERVAHFNAKMAKIDAAMAELTKTPY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            SK + +  I   QDG  RT ++ L++PD + + +  I P        +  +++ ++ YA
Sbjct: 482 ASKAIEAAGIKVSQDGTKRTGFQLLAFPDVTFEQIVLINPALETVEPEIRRQVERDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +   ++ +E  +IP +FDY ++  LSNEL  KLS+ +P NL QA++I+GMTP
Sbjct: 542 NYIARQQRDIDLLQKDEAHVIPANFDYEAIDGLSNELTSKLSLTRPTNLAQAARIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNE 622
           +AL LLL ++K+ + K + 
Sbjct: 602 SALTLLLSHLKRGSQKKSA 620


>gi|223933690|ref|ZP_03625666.1| glucose inhibited division protein A [Streptococcus suis 89/1591]
 gi|330833756|ref|YP_004402581.1| glucose inhibited division protein A [Streptococcus suis ST3]
 gi|223897643|gb|EEF64028.1| glucose inhibited division protein A [Streptococcus suis 89/1591]
 gi|329307979|gb|AEB82395.1| glucose inhibited division protein A [Streptococcus suis ST3]
          Length = 638

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/627 (42%), Positives = 382/627 (60%), Gaps = 6/627 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIG GHAG EA   A+++G  T L T     +  M CNP+IGG  KG +VRE
Sbjct: 5   FAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMVAFMPCNPSIGGSAKGIVVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR  D   IQ ++LN+ KGPAVR  R QAD+  Y   M+R +  QENL + Q
Sbjct: 65  IDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQADKAEYAAEMKRTVERQENLTLRQ 124

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    N       VV+TTGT LRG I IG LK  +G      S +
Sbjct: 125 TMIDEILVEDGKVIGVRTATNQKFSAKAVVVTTGTALRGEIIIGDLKYSSGPNNSLASIT 184

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++  +   + GR KTGTP R++ +TI +++TE Q  DE+   FSF++  +     QI 
Sbjct: 185 LADNLKELGLEIGRFKTGTPPRVNARTINYEETEIQPDDEKPNHFSFLSKDEDYLQDQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  +H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 245 CWLTYTNATSHEIINSNLHRAPMFSGIVKGIGPRYCPSIEDKIVRFADKERHQLFLEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD +Y  G+ST+LPE++Q   I +I GLE   ++R GYAIEYD + P +L  TLETKK
Sbjct: 305 RNTDEIYVQGLSTSLPEDVQQDLIHSIKGLENAQMMRTGYAIEYDMVMPHQLRATLETKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG+VAGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 365 ISGLFTAGQTNGTSGYEEAAGQGIVAGINAALKVQGKPELILKRSDGYIGVMIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
            +EPYR+ TSRAEYR+ LR DNAD RLT IG ++G + + R + F  +  +++     L+
Sbjct: 425 TVEPYRLLTSRAEYRLILRHDNADMRLTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLE 484

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN-LFSICPDARKFSSLVIER 535
           S+ L      N    ++ FK      TA EF+  PD +  + +  I P A    +  IE 
Sbjct: 485 SIKLKPIKETNEKVVAMGFKPLTDALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIEL 544

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y  + + + +++K  E++ IP D D+  + +++ E ++K  ++ P  + QA
Sbjct: 545 IETEVKYEGYIAKALDQVEKMKRMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQA 604

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA +++L++Y++  +  +++
Sbjct: 605 SRISGVNPADISILMVYLEGRSRSISK 631


>gi|83309101|ref|YP_419365.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Magnetospirillum magneticum AMB-1]
 gi|123543730|sp|Q2WBG9|MNMG_MAGSA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|82943942|dbj|BAE48806.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Magnetospirillum magneticum AMB-1]
          Length = 637

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/586 (52%), Positives = 404/586 (68%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+T +  TIG MSCNPAIGGL KG LVREIDA+DGLMGRV D AGIQFR+LN  KG 
Sbjct: 41  RTVLLTQRLETIGEMSCNPAIGGLAKGQLVREIDAMDGLMGRVIDRAGIQFRILNRSKGA 100

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AV+GPR QADR+LYRLAM+  +   ENL +++G           ++ +V+ D S I C  
Sbjct: 101 AVQGPRAQADRKLYRLAMRAALDETENLSLLEGSAEDLVITDGRVAGVVLADGSTIACGA 160

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VV+TTGTFLRG+IH+G+   PAGR+GD+PS  L  +  +     GRLKTGTPARLDG+TI
Sbjct: 161 VVITTGTFLRGLIHLGEKTWPAGRVGDAPSLGLSLALERAGLPLGRLKTGTPARLDGRTI 220

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            WD  ++Q  D+  +PFS++T++IT  Q+ CGIT T  ETH II  N++ + +YSG I+S
Sbjct: 221 HWDSLDRQEGDDPPVPFSYLTERITTPQVACGITATTPETHAIIRANLERAPMYSGQIQS 280

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF +R  HQIFLEPEGL+   VYPNGIST+LPE++Q   I TIPGL
Sbjct: 281 TGPRYCPSIEDKVVRFADRERHQIFLEPEGLDDHTVYPNGISTSLPEDVQLAMIATIPGL 340

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E+  +IRPGYAIEYD+++P+ L  +LETK + GLFLAGQINGTTGYEEAA QGL+AG+N+
Sbjct: 341 EQCRVIRPGYAIEYDFVDPRALHRSLETKGVGGLFLAGQINGTTGYEEAAGQGLMAGLNA 400

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR+      +   R D+Y+GVMIDDL S G  EPYRMFTSRAEYR+ LR DNAD+RLTP 
Sbjct: 401 ARRCAGSAPLVLDRADAYLGVMIDDLVSLGTSEPYRMFTSRAEYRLLLRADNADSRLTPK 460

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G + GC+   R   F          R+LL+SL  +   L    +   +DG  R+A++ L+
Sbjct: 461 GREAGCVDSERWAAFMVKAAGLERGRALLQSLKGSPDWLRRQGLEINRDGVVRSAWDLLA 520

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           YP+  +Q L ++ P+    S  V E+L+IE  YA Y  RQ  + +  + EE   +  D D
Sbjct: 521 YPELGLQALAAVWPELDSLSGAVAEQLEIEGRYAGYLDRQEADIRAYRREEGLALSADLD 580

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           Y ++ +LSNE+++KL   +P  L  A++I G+TPAA+  LL ++KK
Sbjct: 581 YDAIGSLSNEVRQKLKAARPETLAAAARIPGVTPAAVTALLGHVKK 626


>gi|259502138|ref|ZP_05745040.1| glucose-inhibited division protein A [Lactobacillus antri DSM
           16041]
 gi|259169951|gb|EEW54446.1| glucose-inhibited division protein A [Lactobacillus antri DSM
           16041]
          Length = 647

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/627 (41%), Positives = 358/627 (57%), Gaps = 9/627 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  DYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLDMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPA+R  R QAD+  Y   M+  I ++ NL + QG V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAIRALRAQADKHAYHRQMKLTIENEPNLTLRQGTV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +      VVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCQGVITNTGARYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           +  +  FD  R KTGTP R++G TI + +TEKQ  DE    FSF T   +      Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGNTIKFAETEKQPGDEDPHHFSFDTPDSSYIAVTDQLAC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDKIVRF +++ HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHGIIRANLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKSRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEE+Q + + +I GLE   ++RPGYAIEYD + P +L PTLETK +
Sbjct: 319 DTDEYYLDGISTSMPEEVQQKIVHSIKGLEAAELMRPGYAIEYDVVAPYQLHPTLETKLV 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NGT+GYEEAA QGLVAGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGTSGYEEAAGQGLVAGINAGLRAQGKGPFVLGRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL   G  +G +   R  +              L+S
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEKGHAVGLVSAERLAKMEAKKAAVAAEIKRLQS 498

Query: 481 LVLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER 535
           +     + +           +     +A + +  P    Q L    P    +    VIE+
Sbjct: 499 IKFKPSDEAVNDFIEEHGDNRLKDAISAADLIKRPYVDYQTLTRFIPAPATELDRHVIEQ 558

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  ++  +   +K  E + IP + DY+ +  L+ E ++KL  ++P  L QA
Sbjct: 559 VEIQLKYAGYIKKEEQKVDRMKRMEAKRIPDNIDYNDIDGLATEGRQKLEKIRPETLAQA 618

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G+ PA L +L +YI++      +
Sbjct: 619 SRISGVNPADLAILSVYIRQGKFSKKD 645


>gi|49476317|ref|YP_034358.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bartonella henselae str. Houston-1]
 gi|81170522|sp|Q6G1K9|MNMG_BARHE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|49239125|emb|CAF28429.1| Glucose inhibited division protein a [Bartonella henselae str.
           Houston-1]
          Length = 622

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/621 (55%), Positives = 444/621 (71%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAGCEAA  +A+ GA TALITHK S +G+MSCNPAIGGLGKGHLVREID
Sbjct: 2   QLYDVVVIGGGHAGCEAAYASARAGAQTALITHKISALGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DGLMGR ADAAGIQFR+LN +KGPAVRGPR QADR+LY+ A+Q+ +  Q+NL +I+ E
Sbjct: 62  AFDGLMGRAADAAGIQFRLLNRRKGPAVRGPRAQADRQLYKEAIQKLLQKQDNLILIEDE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++++   ++    VVLTTGTFL G IHIG     AGRMG+  S  L 
Sbjct: 122 VIDLIVKDKSISGVILKKQGILPSGAVVLTTGTFLNGFIHIGDKTWAAGRMGEQSSIKLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                +  + GRLKTGTPARL  KTI W+   KQ ADE  +PFS +T+KI   QIEC IT
Sbjct: 182 ERLKSYGINLGRLKTGTPARLSKKTIRWECLPKQQADENPVPFSLLTEKIEQPQIECAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN +TH+II ENI  SA+YSG+I+  GPRYCPSIEDKIV+FGER+GHQIFLEPEGLN D
Sbjct: 242 RTNAQTHQIIRENIHRSALYSGNIEGLGPRYCPSIEDKIVKFGERDGHQIFLEPEGLNDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNG+ST+LPE++Q   ++TI GLE V I++ GYAIEYD++NP++L  TLE + + GL
Sbjct: 302 TIYPNGLSTSLPEDVQVSLLKTIEGLENVTILQSGYAIEYDFVNPQQLTKTLELRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGL+AG+N+ARK   LD I  SR+ +YIGVM+DDL S+GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLLAGLNAARKVGGLDEILISRSTAYIGVMVDDLVSRGVCEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+  +LG + + R + + K  Q  +  RSL + L L
Sbjct: 422 YRMFTSRAEFRLSLRSDNADARLTPLAQQLGIVSKLRWECYQKKQQRLDQARSLCQELFL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T    S+  +    DG  R+AY+ L+YP  SI+ L  I P  +   S  +E ++IE+ YA
Sbjct: 482 TPNQASAHGLQVNHDGIRRSAYDLLAYPHMSIERLSHIWPQLQSIDSKTVESVEIEAQYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q  +   ++ +E+  IP   D  ++  LSNELK K+  + P ++  A KI+GMTP
Sbjct: 542 VYLEKQAQDILALQRDERLEIPSSLDVQAISGLSNELKTKIQKISPRSIADAQKIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEIV 624
           AAL+L++ YI++   +  +  
Sbjct: 602 AALSLIITYIQRQRREKAKSA 622


>gi|332653662|ref|ZP_08419406.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcaceae bacterium D16]
 gi|332516748|gb|EGJ46353.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruminococcaceae bacterium D16]
          Length = 627

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/616 (41%), Positives = 362/616 (58%), Gaps = 3/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ VIG GHAG EAA  AA++G  T   T     +G+M CNPAIGG GKGHLVRE+DA
Sbjct: 8   QYDIAVIGAGHAGIEAALAAARMGLRTVCFTINLDAVGNMPCNPAIGGTGKGHLVRELDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR AD A IQ+R+LN  KGPAV   R QADR  Y+  M+  +  QENL V Q EV
Sbjct: 68  LGGEMGRAADKACIQYRILNRGKGPAVWSLRAQADRREYQKIMKHTLERQENLWVKQAEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S++V    ++      ++ TGT+L G   +G++   +G  G + +  L  
Sbjct: 128 VAIRTENGAVSAVVTHTGAVFAVKAAIIATGTYLGGRTIVGEVVRDSGPDGLAAALPLTQ 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++      R KTGTP R++ +++ + + E Q  D    PFSF T +    +  C +T 
Sbjct: 188 SLLELGVSIRRFKTGTPPRVNARSVDFSQMELQEGDPDAQPFSFTTREHPQNRAVCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N+  S +Y G I+  GPRYCPSIE KIVRF ++  HQ+F+EP GL+T+ 
Sbjct: 248 TNAKTHDIIRANLDRSPLYDGTIEGVGPRYCPSIETKIVRFPDKERHQLFVEPMGLDTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G S++LPE++Q + + TIPGLE+  + RP YAIEYD I+P +L  TLE K + GL+
Sbjct: 308 LYIQGFSSSLPEQVQIEMLHTIPGLEQAEMTRPAYAIEYDCIDPTQLLATLEVKTVPGLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAA QG VAG+N+A K    +     R   YIGV+IDDL +KG  EPY
Sbjct: 368 GAGQFNGSSGYEEAAVQGFVAGVNAALKIQGKEPFILGRDQGYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR EYR+  R DNAD RLTP+G +LG + + + +         +     L+   + 
Sbjct: 428 RMMTSRTEYRLLHRQDNADQRLTPLGYELGLVPKEQLEAVQAKYAAVDRECKRLEHTGVA 487

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                   ++ +     +      + L  P  S ++L    PD    S  + + ++I   
Sbjct: 488 PSPALDAFLAERNQAPVQNGARLADLLRRPPVSYESLAPFDPDRPDLSPEITQAVEIAVK 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ+ + +E+K  E   +P D DY ++  L  E ++KL  ++P NL QAS++ G+
Sbjct: 548 YQGYIQRQLRQVEEMKKLESWPLPADTDYEAIQGLRLEARQKLQQIRPRNLGQASRVSGV 607

Query: 602 TPAALNLLLIYIKKNT 617
           +PA + +L++Y+K+ T
Sbjct: 608 SPADVAVLMVYLKQRT 623


>gi|315654125|ref|ZP_07907041.1| glucose inhibited division protein A [Lactobacillus iners ATCC
           55195]
 gi|315488821|gb|EFU78467.1| glucose inhibited division protein A [Lactobacillus iners ATCC
           55195]
          Length = 630

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 362/621 (58%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVAGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 SHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPEFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +K+
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHNLGLISEERYQEFLHKKEAIAMTMKNIKA 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +  ++  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDSIEKLTGKKLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|15594523|ref|NP_212312.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi B31]
 gi|2688059|gb|AAC66557.1| glucose inhibited division protein A (gidA) [Borrelia burgdorferi
           B31]
          Length = 627

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/626 (46%), Positives = 400/626 (63%), Gaps = 9/626 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           IN  +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VRE
Sbjct: 5   INMDFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q
Sbjct: 65  IDALGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQ 124

Query: 122 GEVAGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V  F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 125 DTVVDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ 
Sbjct: 185 YGLDKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT+ +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K+
Sbjct: 305 FNTEEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG
Sbjct: 365 VKGLFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLK 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++
Sbjct: 485 QRRLSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I 
Sbjct: 541 VKYEGYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIP 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+    + +LLIY    +   N++V+
Sbjct: 601 GIRSTDITVLLIYF---SNPKNKVVI 623


>gi|266620967|ref|ZP_06113902.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium hathewayi DSM 13479]
 gi|288867389|gb|EFC99687.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium hathewayi DSM 13479]
          Length = 635

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/629 (40%), Positives = 378/629 (60%), Gaps = 10/629 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYD++V+G GHAGCEAA  AA+LG  T + T    +I  M CNP IGG  KGHLVRE
Sbjct: 4   LEESYDIVVVGAGHAGCEAALAAARLGLETIMFTVSVDSIALMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ G MG+  D   IQ ++LN  KGPAV   R QAD++ Y   M+  + + ++L + Q
Sbjct: 64  LDAMGGEMGKNIDKTFIQSKMLNESKGPAVHSLRAQADKQNYSREMRNTLENTDHLTIRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E  +++ +     ++  C   VL TGT+L+     G +    G  G   +N 
Sbjct: 124 AEVTDIIVENGVLTGVKTFSGAVYHCKAAVLATGTYLKARCIYGDVSNATGPNGLQAANH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L +S  +   +  R KTGTPAR+D ++I + + E+QF D++++PFSF TD   I   Q+ 
Sbjct: 184 LTDSLKEHGIEMYRFKTGTPARVDKRSIDFSRMEEQFGDKKIVPFSFSTDPETIQKEQVS 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ +TH II  N+  S ++SG I+  GPRYCPSIEDK+V+F ++N HQ+F+EPEG
Sbjct: 244 CWLTYTSEKTHEIIRANLDRSPLFSGAIEGTGPRYCPSIEDKVVKFPDKNRHQVFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T+ +Y  G+S++LPE++QH   RT+PGLE V I+R  YAIEYD IN ++L  TLE K 
Sbjct: 304 LYTNEMYLGGMSSSLPEDVQHAMYRTVPGLEHVKIVRNAYAIEYDCINSRQLKATLEFKT 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF  GQ NG++GYEEAA QG +AG+N++ K    +     R+ +YIGV+IDDL +K 
Sbjct: 364 ISGLFSGGQFNGSSGYEEAAVQGFMAGVNASMKVLGRESFVLDRSQAYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL  IG ++G + + + ++  +           L+
Sbjct: 424 NHEPYRMMTSRAEYRLLLRQDNADLRLMGIGHEIGLVSDEQYEKLLEKESAIETEIKRLE 483

Query: 480 SLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           S  + +       L     +  + G   T  E +  P+ +   L  +     + S  VIE
Sbjct: 484 STNIGASKEVQEFLERNGSTLLKTGT--TLAELIRRPELNYVMLTELDSKRPELSVDVIE 541

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++ I   Y  Y  RQ  +  + K  E + +  DFDYSS+ +L  E  +KL + +P ++ Q
Sbjct: 542 QVDINIKYDGYIRRQKQQVAQYKKLENKKLDADFDYSSVKSLRKEAVQKLDLYRPMSIGQ 601

Query: 595 ASKIEGMTPAALNLLLIYIKK-NTVKLNE 622
           AS+I G++PA +++LL+++++    K +E
Sbjct: 602 ASRISGVSPADISVLLVHLEQLRYQKRDE 630


>gi|163745110|ref|ZP_02152470.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanibulbus indolifex HEL-45]
 gi|161381928|gb|EDQ06337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oceanibulbus indolifex HEL-45]
          Length = 620

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/619 (53%), Positives = 435/619 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  +A++GA TAL+T     IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGAEAAHASARMGAQTALVTMSRDGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M RE   Q+NL +++GE
Sbjct: 62  AMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRTEMLRETEGQDNLQIVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  +   +S +++ D + +  ++VVLTTGTFLRGVIHIG      GRMGD  S  L 
Sbjct: 122 VVDFLMDGPAVSGVLLADGTTLNAASVVLTTGTFLRGVIHIGDESHQGGRMGDRASVKLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RLDG+TI WD  E Q  D+  + FSF++D+I+  Q+ CGIT
Sbjct: 182 ERIDSFGLPMGRLKTGTPPRLDGRTINWDILEGQPGDDEPVLFSFLSDEISAPQVACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II EN+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQ+FLEPEG++  
Sbjct: 242 HTNEATHKIIRENLGRSAMYGGHIDGVGPRYCPSIEDKVVRFADKESHQVFLEPEGVDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP ++Q  ++R++ GLE   I++PGYAIEYDYI+P+ L  TL  + + GL
Sbjct: 302 TVYPNGISTSLPADVQEAYVRSMVGLENAVILQPGYAIEYDYIDPRALSSTLGVRTVGGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGLVAG+N+A  +   + + FSR+DSYIGVMIDDLT++GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLVAGLNAALSAQGKEPVIFSRSDSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP+ ++LGC    R + F + +     ++  L S + 
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPLAIELGCASGERIETFQRKLNALTLVKEQLSSELY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T K L +  +S  QDG  RT ++ L++PD S ++L  + P        V  +++ ++ YA
Sbjct: 482 TPKELQAAGLSVNQDGSKRTGFQVLAFPDISFEDLIPLDPRLTDTPIEVRRQVERDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E   +K +E   IP DFD++SL  LSNELK K+S  +P  + QA++I+GMTP
Sbjct: 542 TYIERQKKEIDLLKKDEGLRIPGDFDFASLSGLSNELKTKISAARPETMAQAARIDGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNE 622
           AAL L+L  +K+   K + 
Sbjct: 602 AALTLILARVKRGAGKKSA 620


>gi|317968240|ref|ZP_07969630.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CB0205]
          Length = 640

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 379/625 (60%), Gaps = 4/625 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+D
Sbjct: 10  EHFDVIVVGGGHAGCEAAITAARLGCSTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVD 69

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + +  
Sbjct: 70  ALGGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREAM 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E   I  +     S      V+LT GTFL G I +G   + AGR G+  +  L 
Sbjct: 130 VTGLVVEDAAIQGVRTYFGSTYSAGAVILTAGTFLGGQIWVGHQSMSAGRAGEQAAEGLT 189

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGI 242
            +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF  T  ++  Q+ C I
Sbjct: 190 EALQELGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPTSWVSGEQMSCHI 249

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF  ++ HQIFLEPEG +T
Sbjct: 250 TRTTAATHQLIKDNLHLTPIYGGVIDSKGPRYCPSIEDKIVRFAGKDSHQIFLEPEGRDT 309

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   +L P+LETK++ G
Sbjct: 310 PEIYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPATQLKPSLETKRVKG 369

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGTTGYEEAAAQGLVAG+N+ R+  + + + F R  SYIG MIDDL +K + E
Sbjct: 370 LFSAGQLNGTTGYEEAAAQGLVAGLNAVRQLRQQEPVHFPREGSYIGTMIDDLITKDLRE 429

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + + +  +     +  L+S+ 
Sbjct: 430 PYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWEIYQRKQEAIEAEKQRLESVR 489

Query: 483 LT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           L        +    +      + T  + L  P F   +L        +    V E  +I+
Sbjct: 490 LKVSDPVAPAVAEETKAAIKGSITLADLLRRPGFHSGDLVRHGLAEAELPLDVREGAEID 549

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y  RQ  +  ++K + +R IP+  DY  +  LS E +EKLS ++P NL QAS+I 
Sbjct: 550 IKYSGYLARQQQQIDQLKKQAERRIPEGIDYEQIGTLSREAREKLSAIEPSNLGQASRIP 609

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIV 624
           G++ A +  L+++++ ++ + N +V
Sbjct: 610 GVSHADVTALMLWLELDSRRNNTLV 634


>gi|288817518|ref|YP_003431865.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
 gi|288786917|dbj|BAI68664.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
 gi|308751121|gb|ADO44604.1| glucose inhibited division protein A [Hydrogenobacter thermophilus
           TK-6]
          Length = 614

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/622 (47%), Positives = 394/622 (63%), Gaps = 17/622 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV+VIGGGHAG EAA  +A++GA T +      TIG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVDEFDVVVIGGGHAGIEAALASARMGAKTVMFVLNADTIGQMSCNPAIGGIAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+  D+ GIQF++LN +KG AV  PR QAD++LYR  M++    QENL + 
Sbjct: 61  EIDALGGEMGKAIDSTGIQFKMLNTRKGKAVWSPRAQADKKLYREYMKKVCERQENLYIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     + N + ++  +     +  TVV+TTGTFL G I+IG    PAGR  +  S 
Sbjct: 121 QDEVVDIIVKDNRVVAVKTKLGLEYKTKTVVVTTGTFLNGTIYIGDKTFPAGRAWEPRSE 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT------ 234
            L   + +  F   R KTGTPARLDG+TI +   E    D+    FSF T+ +       
Sbjct: 181 GLAEFYKRHGFPLMRFKTGTPARLDGRTIDYSGLEIAPGDDPPPKFSFWTEPVGTYWFPK 240

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              QI C IT T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F +++ HQ+
Sbjct: 241 GKEQINCYITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFPDKDRHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEGL+T  VYPNG+ST+LPEEIQ +  R+IPGLE V +IRP YAIEYD + P EL+P
Sbjct: 301 FLEPEGLDTIEVYPNGLSTSLPEEIQWELYRSIPGLENVELIRPAYAIEYDVVPPTELYP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETKKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIG+MID
Sbjct: 361 TLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGIMID 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLT+KGVLEPYR+FTSR+EYR+ LR DNA  RL+ +G +LG + + + K   +  ++   
Sbjct: 421 DLTTKGVLEPYRLFTSRSEYRLHLRQDNAILRLSKLGYELGLLTQDQYKIIKELQRQIEE 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             S  KS          T+++   + K+ T  + L+  DF++ +L +   D       V 
Sbjct: 481 WMSFYKS--------QRTALAIGSEVKSYTPSQLLT-SDFTLDDLKTFGFDVPTHP-FVK 530

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++IE  Y  Y  R++   + +K  E   IP+D DY  +  +S E KEKL   +P  + 
Sbjct: 531 EVVEIELKYEPYMERELKINERLKKLEDVKIPEDLDYDKIQGISKEAKEKLKRFRPITVG 590

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I+G+TPA +  LL Y+ K
Sbjct: 591 QASRIDGITPATITSLLAYLGK 612


>gi|195941909|ref|ZP_03087291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 80a]
          Length = 621

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 397/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLND-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|219684569|ref|ZP_03539512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBr]
 gi|219671931|gb|EED28985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBr]
          Length = 621

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 399/623 (64%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFILNSMRNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K+I + KTE QF D  +IPFSF    +   Q+ C +
Sbjct: 182 DKTLLSLGFEMGRLKTGTPARIHKKSIDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFVAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K+++   +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVADEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 NTDITVLFIYF---SNPKNKVVL 617


>gi|148545138|ref|YP_001272508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri DSM 20016]
 gi|227364301|ref|ZP_03848394.1| glucose-inhibited division protein A [Lactobacillus reuteri MM2-3]
 gi|325683500|ref|ZP_08163016.1| glucose inhibited division protein A [Lactobacillus reuteri MM4-1A]
 gi|148532172|gb|ABQ84171.1| glucose inhibited division protein A [Lactobacillus reuteri DSM
           20016]
 gi|227070614|gb|EEI08944.1| glucose-inhibited division protein A [Lactobacillus reuteri MM2-3]
 gi|324977850|gb|EGC14801.1| glucose inhibited division protein A [Lactobacillus reuteri MM4-1A]
          Length = 647

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/629 (41%), Positives = 369/629 (58%), Gaps = 13/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 19  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 78

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 79  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 138

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 139 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 198

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  D+    FSF T        + Q+ C
Sbjct: 199 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDKEPHHFSFDTPDSAYIPISEQLSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 259 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 319 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 379 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKKPFVLKRSDAYIGVMIDDLVTKGT 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + + R  +  +  ++       L+ 
Sbjct: 439 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHHVGLVSDERLAKMEEKKRQVAAEIKRLEE 498

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVI 533
           + L   +      + +   +  +DG    A + L  P F  Q L    P         VI
Sbjct: 499 IKLKPSDDKVNEFIEAHGDNRLKDGIA--AADLLKRPYFDYQTLAEFIPAPEQDLDRHVI 556

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L 
Sbjct: 557 EQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETLA 616

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           QAS+I G+ PA + +L +Y+++      +
Sbjct: 617 QASRISGVNPADIAILSVYVRQGKFSKKD 645


>gi|323487693|ref|ZP_08092951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Planococcus donghaensis MPA1U2]
 gi|323398427|gb|EGA91215.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Planococcus donghaensis MPA1U2]
          Length = 629

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/619 (43%), Positives = 385/619 (62%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EAA  +A++GA T ++T     I  M CNP+IGG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGAEAALASARMGAKTLVLTMNLDMIAFMPCNPSIGGPAKGIVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGRV D   IQ R+LN  KGPAVR  R QAD+ LY+  M+R +  + NL + QG  
Sbjct: 68  LGGAMGRVIDKTHIQMRMLNTAKGPAVRALRAQADKVLYQQEMKRLMEEEPNLSLHQGIA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  ++ Q   + R ++VV+TTGTFLRG I IG L+  +G     PS  L  
Sbjct: 128 EELIVEDGKIQGLITQVGGIYRANSVVITTGTFLRGEIIIGDLRYSSGPNNQQPSIKLAE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K  F+T R KTGTP R++  +I + KTE Q  D+    FS+ T +    Q+ C +T 
Sbjct: 188 NLEKLGFETVRFKTGTPPRVNSNSIDYSKTEIQPGDDVPRAFSYETTEYITDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETH++I +N+  S +YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 248 TNEETHQVIDDNLHLSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTRE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE +Q + + +IPGLEK  ++R GYAIEYD I P +L+PTLE+K+I  L+
Sbjct: 308 VYVQGLSTSLPEHVQRKLLESIPGLEKAEMMRAGYAIEYDAIVPTQLWPTLESKQIENLY 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+A K    + +  SR+D+YIGV+IDDL +KG  EPY
Sbjct: 368 TAGQINGTSGYEEAAGQGLMAGINAAAKVLGKEEVILSRSDAYIGVLIDDLVTKGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT +G  +G + E R  +F    +        L+S+++ 
Sbjct: 428 RLLTSRAEYRLLLRHDNADMRLTELGYAIGMVKEDRYVKFLSKKERIEEEIKRLRSVMIK 487

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
                   +     S  +DG      + L  P+ +   +  +          V E+++I 
Sbjct: 488 PNETTQQTIRDAGGSELKDGIR--GADLLKRPEMTYDMISQLTASPVDLEDEVKEQVEIH 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + +++  ++K  E + IP + DY ++  ++ E + KL+ ++P ++ QAS+I 
Sbjct: 546 IKYEGYIEKSLMQVDKLKKMENKKIPDNIDYHAISGIATEARGKLAEVRPLSIAQASRIS 605

Query: 600 GMTPAALNLLLIYIKKNTV 618
           G+ PA +++LL+YI++  +
Sbjct: 606 GVNPADISILLVYIEQGKI 624


>gi|184154470|ref|YP_001842811.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus reuteri JCM 1112]
 gi|183225814|dbj|BAG26331.1| cell division protein [Lactobacillus reuteri JCM 1112]
          Length = 641

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/629 (41%), Positives = 369/629 (58%), Gaps = 13/629 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 13  SYDVIVVGAGHAGSEAALAAARMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDA 72

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D   +Q R+LN  KGPAVR  R QAD+  Y  AM++ I  + NL + Q  V
Sbjct: 73  LGGEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    +     TVVLT GT  RG I IG+L+  +G      +  L  
Sbjct: 133 DQLIVEDGVCKGVITNTGARYHAKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSE 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           +  +  FD  R KTGTP R++GKTI +  TE+Q  D+    FSF T        + Q+ C
Sbjct: 193 NLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDKEPHHFSFDTPDSAYIPISEQLSC 252

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II EN+  + ++SG IK  GPRYCPSIEDKIVRF ++  HQ+FLEPEG 
Sbjct: 253 WLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGR 312

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD  Y +GIST++PEEIQ + + +I GLE   ++RPGYAIEYD + P +L PTLETK I
Sbjct: 313 DTDEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKII 372

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ NG++GYEEAA QGL+AGIN+  ++         R+D+YIGVMIDDL +KG 
Sbjct: 373 KNLYTAGQTNGSSGYEEAAGQGLIAGINAGLRAQGKKPFVLKRSDAYIGVMIDDLVTKGT 432

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RL  +G  +G + + R  +  +  ++       L+ 
Sbjct: 433 KEPYRLLTSRAEYRLILRHDNADFRLMEMGHHVGLVSDERLAKMEEKKRQVAAEIKRLEE 492

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVI 533
           + L   +      + +   +  +DG    A + L  P F  Q L    P         VI
Sbjct: 493 IKLKPSDDKVNEFIEAHGDNRLKDGIA--AADLLKRPYFDYQTLAEFIPAPEQDLDRHVI 550

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++I+  YA Y  ++ ++ + +K  E + IP D DY  +  L+ E ++KL  ++P  L 
Sbjct: 551 EQVEIQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETLA 610

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           QAS+I G+ PA + +L +Y+++      +
Sbjct: 611 QASRISGVNPADIAILSVYVRQGKFSKKD 639


>gi|41058562|gb|AAR99263.1| glucose-inhibited division protein A [Candidatus Blochmannia
           ocreatus]
          Length = 624

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/617 (45%), Positives = 383/617 (62%), Gaps = 9/617 (1%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGGHAG EAA  +A++  +T LITH    +G MSCNPAIGG+GKGHLV+EIDA+ G+M 
Sbjct: 1   IGGGHAGTEAALASARMKCNTLLITHNIDMLGQMSCNPAIGGIGKGHLVKEIDAMGGVMA 60

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
              D +GIQFR+LN  KG AVR  R QAD+ LYR  ++  +  QE L +IQG V      
Sbjct: 61  YAIDRSGIQFRILNNTKGAAVRATRAQADKILYRQIIRNILEYQEFLHIIQGSVEDLIIV 120

Query: 131 KNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL-FNSFMK 188
            N I  +V  +        +VVLTTGTFL G IHIG      GR GD+ S++L  +    
Sbjct: 121 DNKIIGVVAPRIGVKFYARSVVLTTGTFLNGKIHIGMKSFSGGRSGDTESSTLLSDRLKN 180

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNL 247
             F  GRLKTGT  R+  + I +D    Q++D+ +  FSF+  +  +  Q+ C IT TN 
Sbjct: 181 LSFRIGRLKTGTSPRIHSRNINFDILNIQYSDDPVPVFSFIGSETQHPAQVPCYITHTNH 240

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           ETH I+  N+  S IY+G ++   PRYCPSIEDKI+RF +RN HQ+FLEPEGL+T  VY 
Sbjct: 241 ETHEIVKSNLHQSPIYTGLVQGKSPRYCPSIEDKIIRFSDRNSHQVFLEPEGLSTPEVYL 300

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIST+LP ++Q + I++I GLE  NI RPGYAIEYD+ +P++L  TLE+K I GLF +G
Sbjct: 301 NGISTSLPFDVQKKIIKSIKGLENANITRPGYAIEYDFFDPRDLKLTLESKLIVGLFFSG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL+AGIN+AR +   +     R  +Y+GV++DDL + G  EPYRMF
Sbjct: 361 QINGTTGYEEAAAQGLLAGINAARFAKNKEGWYPRRDQAYLGVLVDDLCTHGTEEPYRMF 420

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL---T 484
           T+RAEYR+SLR DNAD RLT I   LG I +   K+F    +     R  L+ + +   +
Sbjct: 421 TARAEYRLSLREDNADLRLTEIARNLGLINDIWWKKFCMKKESIEKERQRLRGIYIFPCS 480

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVIERLQIESS 541
            +     +       +     E L  P+     L  +    P        V+E+++I+  
Sbjct: 481 PEITKLNNFLKSPLTREINGEELLRRPEIDYIKLSRLNTFFPSILTIDKKVLEQIEIQIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  E  +  F E  L+P D D++S+  LS E+ EKL+  +P+++ QAS+I G+
Sbjct: 541 YEGYIHRQTEEIAKHIFNESVLLPADIDFNSIFGLSKEVVEKLNNCRPYSVGQASRISGV 600

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAA++ LL+++KK  +
Sbjct: 601 TPAAISNLLVWLKKQGL 617


>gi|190893978|ref|YP_001980520.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
 gi|190699257|gb|ACE93342.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
          Length = 625

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/618 (61%), Positives = 471/618 (76%), Gaps = 1/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MIGNVYDVIVIGGGHAGSEAASAAARLGARTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGR+ADAAGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRIADAAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ +VM+D  +++   VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 121 EGDAFDLDVVDNRVAGVVMKDGRLLKAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGK+I W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKSIDWQSVGRQGADEDLVPFSFMTDSITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIIDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FIRTIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIRTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL AG+N+A +S   D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSTDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+G  R++RF  Y  E +  RSLL S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADVRLTPLGMRLGCVGSAREQRFTAYQVEVDAGRSLLMS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           L LT        +    DG+ RTAY+ LSYPD++   L  + PD        V E L+IE
Sbjct: 481 LTLTPNEARRAGLHINLDGQRRTAYDLLSYPDYNFAALRQVWPDALAAVRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFDYSALSGLSNELKAKLSTARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAA+ LLL+++++ +
Sbjct: 601 GMTPAAIALLLVHLRRQS 618


>gi|226320915|ref|ZP_03796466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 29805]
 gi|226233687|gb|EEH32417.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 29805]
          Length = 621

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/623 (46%), Positives = 396/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + K E QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKMEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|319957596|ref|YP_004168859.1| glucose inhibited division protein a [Nitratifractor salsuginis DSM
           16511]
 gi|319420000|gb|ADV47110.1| glucose inhibited division protein A [Nitratifractor salsuginis DSM
           16511]
          Length = 624

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/616 (46%), Positives = 381/616 (61%), Gaps = 6/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIVIGGGHAG EA+  AA++GA T +IT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NHDVIVIGGGHAGIEASLAAARMGAKTLMITILAEQIGASSCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA G+QFR+LN  KGPAVRG R Q D + YR+ M+   L+  NL+V Q  V
Sbjct: 62  LGGEMGLCTDATGLQFRLLNSSKGPAVRGSRAQIDMDRYRIYMRDVCLNTPNLEVKQEIV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +  Q  +      V++ +GTFL G+IHIG+    AGR G+  S SL  
Sbjct: 122 ERLIVEDGEVKGVETQLGNRYLAPKVIIASGTFLNGLIHIGQRTQQAGRQGEFASVSLAE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGI 242
           +  +  F+ GRLKTGT AR+ G +I +   E+Q  DER IPFSF TD+      Q+ C +
Sbjct: 182 NLREMGFEIGRLKTGTCARIAGDSIDFSVMEEQPGDERPIPFSFRTDRENFNPEQMPCWV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETHRII  N   + ++SG I+  GPRYCPSIEDKI RF +R  HQ+F+EP+    
Sbjct: 242 TYTTEETHRIIESNFHRAPLFSGQIEGVGPRYCPSIEDKIDRFRDRPRHQVFVEPQTREA 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D  Y NG+ST+LP ++Q   IR+I GLEK  I+R GYAIEYD+I P EL+ TLE+KKI G
Sbjct: 302 DEFYLNGLSTSLPTDVQEAMIRSISGLEKAKIVRWGYAIEYDFIQPTELYHTLESKKIRG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ+NGTTGYEEAAAQGL+AGIN+       + +   R ++YIGV+IDDL +KG  E
Sbjct: 362 LYWAGQVNGTTGYEEAAAQGLMAGINAVLALRGEEPLILGRDEAYIGVLIDDLVTKGTNE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNA  RL   G+KLG + E+  K+ A    +       L+S  
Sbjct: 422 PYRMFTSRAEYRLLLREDNAHLRLAHYGVKLGLLPEKFGKKVAGTKAQIAEALEWLRSHY 481

Query: 483 LTSKN---LSSTSISFKQDGKTRTAYEFLSY-PDFSIQNLFSICPDARKFSSLVIERLQI 538
            T          ++  ++        + L+   + S + L  + P+  K+   VIE++ +
Sbjct: 482 ATPTKEFIAQLEAMGEQRINDKTAWIDLLARIAEPSREKLLELLPEFAKYPDEVIEQILV 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  +   +       IP+DFDY  +  LSNE+ EKL    P  L +AS+I
Sbjct: 542 EAKYYRYIEKQQQQIDRMHEMHTVRIPEDFDYRKVQGLSNEIVEKLEKATPPTLFEASRI 601

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+ +L +YIK
Sbjct: 602 SGITPAAIEILHVYIK 617


>gi|309807861|ref|ZP_07701793.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 01V1-a]
 gi|329919809|ref|ZP_08276760.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 1401G]
 gi|308168963|gb|EFO71049.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 01V1-a]
 gi|328937156|gb|EGG33584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners SPIN 1401G]
          Length = 630

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  AA++G  T L+T     +  M CNP++GG  KG +VRE+
Sbjct: 6   SNEYDVIVVGAGHAGCEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  +Q R+LN  KGPAVR  R QAD+  Y   M+  I +  NL + QG
Sbjct: 66  DALGGQMGKNIDATYVQMRMLNTGKGPAVRALRAQADKWKYHEYMKNTIENTPNLTLRQG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E+ I   ++    +     +VVLT GT  RG I IG+L   +G     PS  L
Sbjct: 126 MADELIVEEGICKGLITNTGAKYLAKSVVLTPGTATRGRIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KTE++  D+    FS+ T  D     Q+ C
Sbjct: 186 AENLEKLGFKMRRFKTGTPPRVDGNTIDYSKTEEEPGDKEPRHFSYTTSDDDYLKDQLSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  + ++SG IK  GPRYCPSIE KIVRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNPVTHEIIRKNLDRAPMFSGVIKGVGPRYCPSIESKIVRFADKDRHQIFLEPEGW 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 KTREIYVGDFSTSMPEEVQLKMLHSVVGLEKAEMMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 RHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFVLGRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G  LG I E R + F    +        +K+
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHNLGLISEERYQEFLHKKEAIAMTMKNIKA 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +   + + +     KQD         +FL  P  +   +  +          V E+++
Sbjct: 486 ITIHPTEEVQNYLKDIKQDALNGAVNGADFLKRPRVTFDAIEKLTGKKLAADRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++ I    +   E + IP+  DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKIMVDRLHRLESKKIPEGIDYAAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAVLTAYIQQGRI 626


>gi|224531719|ref|ZP_03672351.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia valaisiana VS116]
 gi|224511184|gb|EEF81590.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia valaisiana VS116]
          Length = 621

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 397/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            ++ IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFEAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRASVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +     F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF  DK+   Q+ C +
Sbjct: 182 DKTLRGLGFEMGRLKTGTPARIHKKSVNFSKTEVQFGDSDIIPFSFSNDKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S +YSG+I   GPRYCPSIEDKI++F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIIKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLENAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEDRYSRYLFKKSRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++S+  +   +   ++  Y  L  P  S+ NL  I P     S +++E+++ +  Y
Sbjct: 482 LSLKDVSNEQL---KKHVSKDFYHILKDPSVSLDNLIKIDPSLND-SKVILEQVEFDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLHNLELVKLPFDFNYEVIEGLSKEAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 STDITVLFIYF---SNPKNKVVL 617


>gi|291541856|emb|CBL14966.1| glucose-inhibited division protein A [Ruminococcus bromii L2-63]
          Length = 624

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/619 (42%), Positives = 388/619 (62%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV V+G GHAG EAA  AA+LG  TA+ T     +G+  CNP+IGG  KGHLVREIDA
Sbjct: 7   EYDVAVVGAGHAGIEAALAAARLGCKTAIFTINMDAVGNCPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ AD   +Q R+LN  KGPAV   R Q DR  Y   M+ +I  Q NLD+ Q E+
Sbjct: 67  LGGEMGKTADECFLQSRMLNRGKGPAVHSLRAQIDRRKYSSVMKHKIELQNNLDLRQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +     ++  +  ++ +C TV++ TGT+L G I +G++   +G  G  P+  L +
Sbjct: 127 TDIE-KTEDGYNLTTRMLAVFKCKTVIIATGTYLGGRIFVGEVSYESGPDGIFPAAFLGS 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K      R KTGTPAR+   +I + + E Q  DE   PFS+ T+ +   ++EC ++ 
Sbjct: 186 SLKKLGLPLRRFKTGTPARVLKSSIDFSELEVQKGDEPPQPFSYETENLGENKVECHVSW 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ET +II+ENI  S +Y+G I+  GPRYCPS EDKI+RF ++  HQ+F+EP GL+T+ 
Sbjct: 246 TNDETKQIILENINRSPLYAGKIEGVGPRYCPSFEDKIMRFKDKPRHQLFIEPCGLDTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q +F  TI GLE   I+RP YAIEYD ++P  + PTLE K   GLF
Sbjct: 306 MYLQGMSSSLPEEVQLKFYHTIKGLEHCLIMRPAYAIEYDCVDPLAMNPTLEFKDFEGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAGIN+A K    + + F R++SYIG ++DDL +KG  EPY
Sbjct: 366 GAGQFNGSSGYEEAAAQGLVAGINAAMKVLGREPVIFDRSESYIGTLVDDLVTKGANEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLTP+G ++G I + R  +F K  +      + LKS V++
Sbjct: 426 RMMTSRSEYRLVLRQDNADERLTPLGHRIGLISDERYAKFLKKQELKKEELNRLKSTVIS 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++  +  ++  +  +     + +  P      L +I     +    + E+++IE  
Sbjct: 486 PTDEANEILVSRETSEITSGVRLIDLMKRPQLGYDALKNIDKTRPELDPNIFEQVEIEIK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + +++K  E + +PKDFDY+ +  L  E +EKL+ +KP N+ QAS+I G+
Sbjct: 546 YEGYIQKQLKQVEQMKKLEVKQLPKDFDYNEIEGLRLEAREKLNKIKPLNIGQASRISGV 605

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++LLI++ +N  + 
Sbjct: 606 SPADISVLLIWLAQNNRRQ 624


>gi|99082705|ref|YP_614859.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria sp. TM1040]
 gi|123077394|sp|Q1GCL9|MNMG_SILST RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|99038985|gb|ABF65597.1| Glucose inhibited division protein A [Ruegeria sp. TM1040]
          Length = 627

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/609 (53%), Positives = 417/609 (68%), Gaps = 2/609 (0%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAG EAA  +A++G  TAL+T +   IG MSCNPAIGGLGKGHLVREIDALDG+MGRVAD
Sbjct: 18  HAGTEAAHASARMGVRTALVTLRRDGIGVMSCNPAIGGLGKGHLVREIDALDGVMGRVAD 77

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-I 133
            AGIQFR+LN +KGPAV+GPR QADR +YR  M R   +Q NLD+I+GEV  F  E    
Sbjct: 78  LAGIQFRLLNRRKGPAVQGPRAQADRSIYRKEMLRATEAQSNLDIIEGEVVDFLMESPTR 137

Query: 134 ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
           +  I++ D S IR   VVLT+GTFL GVIHIG      GRMGD PS  L      F+   
Sbjct: 138 VRGIILDDQSEIRAECVVLTSGTFLNGVIHIGNKSSSGGRMGDRPSIKLAERLKSFELPL 197

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRII 253
           GRLKTGTP RLDG+TI WD  + Q  DE    FSF++   +  QI CGIT TN +TH II
Sbjct: 198 GRLKTGTPPRLDGRTINWDILDSQPGDEDPTLFSFLSTNTSAPQIACGITHTNEKTHEII 257

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            +N++ SA+Y G I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG+N   VYPNGIST+
Sbjct: 258 RDNLELSAMYGGHIEGVGPRYCPSIEDKIVRFADKTSHQIFLEPEGVNDHTVYPNGISTS 317

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           LPE++Q  ++R+I GLE   +++PGYAIEYDY++P+ L  TLE + + GL+LAGQINGTT
Sbjct: 318 LPEDVQVDYVRSIVGLENAEVLQPGYAIEYDYVDPRALRSTLELRDVEGLYLAGQINGTT 377

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAAAQGLVAG+N+A    K   I F R++SYIGVMIDDL + GV EPYRMFTSRAE+
Sbjct: 378 GYEEAAAQGLVAGLNAASHRLKQQEIVFGRSNSYIGVMIDDLITNGVTEPYRMFTSRAEF 437

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI 493
           R+SLR DNAD RLTPIG  LGCI E R+  F + +      +S L S++LT K L    I
Sbjct: 438 RLSLRADNADQRLTPIGYDLGCISEVRRSEFDRKMDAITRTKSALTSVLLTPKQLLEAGI 497

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEA 553
              QDG  R   + L++P     ++  + P+     + + E++  +S YA Y  RQ  E 
Sbjct: 498 QVNQDGNKRNGLDVLAFPKVEFDDILPLFPELADTETSIREQVTRDSLYANYIARQEKEV 557

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
             +K +E+  IP+DF Y  +  LS EL++KL   +P +L QA++I+GMTPAAL L+L  +
Sbjct: 558 ASLKRDEQYRIPRDFSY-EIDGLSMELRQKLERSRPESLAQAARIDGMTPAALALMLGSL 616

Query: 614 KKNTVKLNE 622
           KK +   ++
Sbjct: 617 KKLSRGESK 625


>gi|216264667|ref|ZP_03436659.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 156a]
 gi|224532820|ref|ZP_03673435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi WI91-23]
 gi|224534095|ref|ZP_03674678.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi CA-11.2a]
 gi|215981140|gb|EEC21947.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 156a]
 gi|224512209|gb|EEF82595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi WI91-23]
 gi|224512794|gb|EEF83162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi CA-11.2a]
 gi|312148349|gb|ADQ31008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi JD1]
          Length = 621

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 397/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|225377578|ref|ZP_03754799.1| hypothetical protein ROSEINA2194_03228 [Roseburia inulinivorans DSM
           16841]
 gi|225210554|gb|EEG92908.1| hypothetical protein ROSEINA2194_03228 [Roseburia inulinivorans DSM
           16841]
          Length = 645

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/618 (40%), Positives = 368/618 (59%), Gaps = 14/618 (2%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA   A+LG  T + T    +I  M CNP IGG  KGHLVREIDAL G MG+
Sbjct: 19  GAGHAGCEAALACARLGLETIIFTVSVDSIAMMPCNPNIGGSSKGHLVREIDALGGEMGK 78

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE- 130
             D   IQ ++LN  KGPAV   R QAD+  Y + M++ + + ++L + Q EV+   TE 
Sbjct: 79  NIDKTFIQSKMLNKSKGPAVHSLRAQADKMNYSMEMRKTLQNTDHLTIRQAEVSEIITET 138

Query: 131 --------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                      ++ +     ++  C  VVL TGT+L      G++    G  G   +N L
Sbjct: 139 TALENGKEIQKMTGVKTFSGAVYHCKAVVLCTGTYLCARCLTGEMITYTGPNGLQAANHL 198

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            +S  +   +  R KTGTPAR+D +++ + K ++Q  DER++PFSF T  + +   Q+ C
Sbjct: 199 TDSLKEHGIEMFRFKTGTPARIDKRSVDFSKMQEQKGDERVVPFSFTTNPEDVQIDQVSC 258

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S IY+G I+  GPRYCPSIEDK+V+F +++ HQIF+EPEG+
Sbjct: 259 WLTYTNEKTHEIIRNNLDRSPIYAGIIEGTGPRYCPSIEDKVVKFADKDRHQIFIEPEGI 318

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y  G+S++LPE++QH+  RT+PGLE V I+R  YAIEYD INP +L+ TLE K I
Sbjct: 319 NTNEMYVGGMSSSLPEDVQHEMYRTLPGLEHVKIVRNAYAIEYDCINPNQLYATLEFKNI 378

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF  GQ NG++GYEEAA QGLVAGIN+A      + +   R+++YIGV+IDDL +K  
Sbjct: 379 KGLFSGGQFNGSSGYEEAACQGLVAGINAAMSILGKEPLILDRSEAYIGVLIDDLVTKEN 438

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RL+  G ++G I + R     +           +  
Sbjct: 439 HEPYRMMTSRAEYRLLLRQDNADLRLSKKGYEIGLISQERYDWICQKEVLIQNEIERVAG 498

Query: 481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + + +       +            T  E +  P+   + L  I  +  +    V+E++ 
Sbjct: 499 VKIGANKEVQALLESYGSIPLNTGTTLTELIRRPELDYEKLAPIDKERPELPYDVVEQVN 558

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ+ + +  K  E + I +DFDY  +P+L  E ++KL + +P ++ QAS+
Sbjct: 559 INIKYDGYIVRQIKQVEHYKKLENKKIAEDFDYDEVPSLRIEARQKLKLYRPLSIGQASR 618

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++PA +++LL+Y+++
Sbjct: 619 ISGVSPADISVLLVYMEQ 636


>gi|15225046|ref|NP_178974.1| glucose-inhibited division family A protein [Arabidopsis thaliana]
 gi|4733959|gb|AAD28643.1| similar to glucose inhibited division protein A from prokaryotes
           [Arabidopsis thaliana]
 gi|330251139|gb|AEC06233.1| glucose-inhibited division family A protein [Arabidopsis thaliana]
          Length = 723

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/625 (42%), Positives = 383/625 (61%), Gaps = 6/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A+LGAST L+T     I    CNPA+GG  K  LV E+DA
Sbjct: 72  TYDVIVVGAGHAGCEAALASARLGASTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 131

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G+VAD   +Q R+LNV +GPAVR  R Q D+  Y   M++ + S ENL + +  V
Sbjct: 132 LGGDIGKVADRCYLQKRILNVSRGPAVRSLRAQTDKREYATEMKKIVDSTENLCIREAMV 191

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +           +V+LTTGTF+ G I +GK  +PAGR G+S S  L 
Sbjct: 192 TDIIVGKNDNVEGVATFFGMNFYAPSVILTTGTFMSGKIWVGKKSMPAGRAGESASQGLT 251

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  K  F+T RLKTGTPAR+D +TI +   E Q  DE +  FSF  D  I   Q+ C +
Sbjct: 252 ENLQKLGFETDRLKTGTPARVDRRTIDFSNLEAQHGDEEVSWFSFDPDFHIEREQMCCYL 311

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG + 
Sbjct: 312 TRTTKITHQLIRDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGRDV 371

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLE  +++RP YA+EYDY+   +   +L TKKI G
Sbjct: 372 PEIYVQGFSTGLPENLQLPLLRSLPGLENCSMLRPAYAVEYDYLPAHQCSRSLMTKKIEG 431

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAAAQG+++GIN+AR ++    +   R  SYIG +IDDL +K + E
Sbjct: 432 LFFSGQINGTTGYEEAAAQGIISGINAARHADGKKHVVLERESSYIGTLIDDLVTKDLRE 491

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+E+R+ LR DNAD+RLTP+G +LG I +RR K + +     +  +  LK++ 
Sbjct: 492 PYRMLTSRSEHRLLLRFDNADSRLTPLGRELGLIDDRRWKLYQEKQARISEEKKRLKTVK 551

Query: 483 LTSK----NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++          +S+S +   ++ T    L  P    + L          S +  + ++I
Sbjct: 552 ISVAVGDLAAEVSSVSSQPVKESATLESLLKKPHIHYKLLEKHGFGNETLSRMEKDCVEI 611

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  + +++  ++ R +P D DY S+  LS+E +EKLS ++P  + QAS++
Sbjct: 612 DIKYEGFIVRQQNQLQQMVHQQHRRLPDDLDYYSMTTLSHEGREKLSKVRPETIGQASRV 671

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G++PA +  LLI ++ N  +  ++
Sbjct: 672 GGVSPADITALLITLESNRRRTQDV 696


>gi|154245778|ref|YP_001416736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthobacter autotrophicus Py2]
 gi|154159863|gb|ABS67079.1| glucose inhibited division protein A [Xanthobacter autotrophicus
           Py2]
          Length = 626

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/610 (56%), Positives = 446/610 (73%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAGCEAAA +A+ GA TAL+TH  STIG+MSCNPAIGGLGKGHLVREIDAL
Sbjct: 12  FDVIVVGGGHAGCEAAAASARTGARTALLTHSRSTIGAMSCNPAIGGLGKGHLVREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD  GIQFRVLN +KGPAVRGPR QADR+LY  AMQ  + +Q+ L +++GE  
Sbjct: 72  DGLMGRVADQGGIQFRVLNRRKGPAVRGPRAQADRKLYAPAMQAALAAQDGLTIVEGEAD 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   I+ + + D   + C  VVLTTGTFL G+IH+G++  PAGRMG+ P+  L  +
Sbjct: 132 DLLVAGGGIAGVRLADGRELSCGAVVLTTGTFLNGLIHMGEVSYPAGRMGEKPALGLSPA 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTPARLDG+TI W   E Q  D+R  PFS +T  + NRQ+ECGITRT
Sbjct: 192 LARLGFSLGRLKTGTPARLDGRTIDWASLEMQPGDDRPEPFSALTTFLPNRQVECGITRT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              TH +I  N+  SA+YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   +
Sbjct: 252 TDATHELIRANLSRSAMYSGRIESSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDPTI 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+ST+LP E+Q  F+RTIPGLE+V ++RPGYAIEYD+++P+EL PTLE K+++GLFL
Sbjct: 312 YPNGLSTSLPAEVQTAFLRTIPGLEQVAVLRPGYAIEYDHVDPRELAPTLEAKRVAGLFL 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AG+N+AR++   D   F R ++Y+GVM+DDL ++GV EPYR
Sbjct: 372 AGQINGTTGYEEAAAQGLLAGLNAARRAGGADGTVFDRAEAYLGVMVDDLVTRGVSEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR++LR DNAD RLT  G  LG +G  R   FA+        R+L +SL LT 
Sbjct: 432 MFTSRAEYRLTLRADNADQRLTRHGEALGLVGAERSAHFARRSAALEEARALAESLSLTP 491

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   +S  +DG+ RTA++ L+YPD  +  L +I P        V E+++I++ YA Y
Sbjct: 492 TEGARHGLSVNRDGQRRTAFDLLAYPDIDMVRLGAIWPQLAGLDPAVAEQVEIDAKYAVY 551

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  +   ++ +E+  +P+D  Y+ LP LSNELK+KL+ ++P  + QA ++EGMTPAA
Sbjct: 552 LHRQAADISMLRRDEQLSLPEDLSYADLPGLSNELKQKLARIRPRTVGQAGRMEGMTPAA 611

Query: 606 LNLLLIYIKK 615
           L LL  + ++
Sbjct: 612 LALLATHARR 621


>gi|212697395|ref|ZP_03305523.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675587|gb|EEB35194.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 633

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/619 (41%), Positives = 372/619 (60%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ SYD++VIG GHAGCEAA  +A+LG  T ++T    ++  M CNP IGG GKGH+VRE
Sbjct: 9   IDESYDIVVIGAGHAGCEAALSSARLGFKTLVLTTSMESVADMPCNPNIGGTGKGHIVRE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ + +QENLD+ +
Sbjct: 69  IDALGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKIKYHQEMKKTLENQENLDLFE 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV   N E   + SI     ++      V+ TGT+L G I +G  +  +G  G S +  
Sbjct: 129 QEVDKINVEDGKVKSIETVQGAIFPTKACVVCTGTYLNGKILMGDFQKTSGPHGLSAATH 188

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L +S  +  F   R KTGTPAR+D K++   KTE Q  DE ++ FSF+ +       +Q 
Sbjct: 189 LSDSLEELGFSLRRFKTGTPARVDRKSLDLTKTEIQKGDENIVAFSFLNEGKDFSDKKQE 248

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T T  +T  IIMEN++ S +Y G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE
Sbjct: 249 ACYLTYTTEKTKEIIMENLERSPMYGGLVKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPE 308

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+TD +Y  G+S+ LP+E+Q +F +TI GLE   IIRP Y IEYD ++   L  +LE+K
Sbjct: 309 SLSTDEMYVQGVSSTLPQEVQKEFYKTIEGLEDCKIIRPAYGIEYDCLDSTNLKRSLESK 368

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I  LF AGQING++GYEEAA QGLVAGIN+A K    D +   R+D+YIGV+IDDL +K
Sbjct: 369 EIENLFFAGQINGSSGYEEAAGQGLVAGINAALKLRGDDPLILDRSDAYIGVLIDDLVTK 428

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSR EYR+++R DNAD RLT    ++G + + R ++  +  +        L
Sbjct: 429 GTNEPYRMMTSRCEYRLTMRQDNADLRLTEKAHEIGLVTDERYQKMIEKRKNIEGEIKRL 488

Query: 479 KSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           + +++     ++     I         + ++ +  P+ + + L  +  D          +
Sbjct: 489 QKIMVGPSQENNKIMEEIGSSPLKTGYSLFDLIKRPELTYEKLEILDRDRPTLPKFQQIQ 548

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +Q E  Y  Y  +QM +  + K  E + +  D DY+ +  L  E  EKL+ +KP ++ QA
Sbjct: 549 VQTEIKYQGYIKKQMADIGKFKKLENKKLDHDTDYTKIKGLKKESAEKLNKIKPDSIGQA 608

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G++PA +N+LLI +K
Sbjct: 609 SRISGVSPADINVLLIRLK 627


>gi|323135829|ref|ZP_08070912.1| glucose inhibited division protein A [Methylocystis sp. ATCC 49242]
 gi|322398920|gb|EFY01439.1| glucose inhibited division protein A [Methylocystis sp. ATCC 49242]
          Length = 616

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/615 (54%), Positives = 428/615 (69%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + +DVIV+GGGHAGCEAAA +A+LGA TAL+TH  ++IG+MSCNPAIGGLGKG LVR
Sbjct: 1   MSVKEFDVIVVGGGHAGCEAAAASARLGARTALVTHSRASIGAMSCNPAIGGLGKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADA GIQFRVLN  KGPAVRGPR QADR+LYR AM   I   +NL V+
Sbjct: 61  EIDALDGLMGRVADAGGIQFRVLNRSKGPAVRGPRAQADRKLYRNAMLAAIEGVDNLTVL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V     E   +  +       IR + VV+TTGTFL GVIHIG  + PAGRMGD P+ 
Sbjct: 121 EGAVEDLLVEGFKVRGVRTASGEDIRAAAVVITTGTFLAGVIHIGDERTPAGRMGDPPAI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     +  F  GRLKTGTP RLDG+TI W++ E Q+ DE   PFS +T  I NRQI C
Sbjct: 181 GLSRRIREAGFAVGRLKTGTPPRLDGRTIRWEELETQWGDESPEPFSSLTTHIANRQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRT    H II  ++  S + +G I   GPRYCPSIEDK+VRF +R+ HQIFLEPEGL
Sbjct: 241 AITRTTPTAHEIIRSDLHLSPMRTGAISGPGPRYCPSIEDKVVRFADRDAHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNG+ST+LP   Q  FI  IPGLE   IIRPGYAIEYDY++P+EL P+LETK++
Sbjct: 301 DDDTVYPNGVSTSLPLATQRAFINAIPGLEDARIIRPGYAIEYDYVDPRELLPSLETKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LFLAGQINGTTGYEEAAAQGLVAG+N+AR +     + F R ++Y+GVMIDDL ++GV
Sbjct: 361 QRLFLAGQINGTTGYEEAAAQGLVAGLNAARLAAGRGAVIFDRAEAYLGVMIDDLVTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ LGC+G  R   FAK  ++ +  R+LL+S
Sbjct: 421 SEPYRMFTSRAEYRLSLRADNADERLTPKGVGLGCVGALRAATFAKRAEKLSRARALLES 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L LTS       +   QDG+ R+A+  L++P  ++  L  I  +  +     +ER++ ++
Sbjct: 481 LSLTSSAALRHGLPVNQDGQRRSAFALLAFPSVTLARLQEIWSELAEIDPSTVERVETDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  RQ  +    + +E+  +P+  DY S+  LS EL+ KL+ L+P  + QA +I+G
Sbjct: 541 RYSVYLDRQQADIDSFRRDEQLALPESLDYGSIAGLSAELRGKLTYLRPRTIGQAQRIDG 600

Query: 601 MTPAALNLLLIYIKK 615
           MTP+AL LL    ++
Sbjct: 601 MTPSALTLLAARARR 615


>gi|312149390|gb|ADQ29461.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi N40]
          Length = 621

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/623 (46%), Positives = 396/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + K E QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKMEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIRIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|218249586|ref|YP_002374706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi ZS7]
 gi|223889242|ref|ZP_03623830.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 64b]
 gi|226321496|ref|ZP_03797022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi Bol26]
 gi|1707903|sp|P53362|MNMG_BORBU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226704791|sp|B7J1B1|MNMG_BORBZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1200212|emb|CAA78149.1| gidA [Borrelia burgdorferi]
 gi|2689170|emb|CAA06005.1| glucose inhibited division protein A [Borrelia burgdorferi]
 gi|218164774|gb|ACK74835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi ZS7]
 gi|223885275|gb|EEF56377.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 64b]
 gi|226232685|gb|EEH31438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi Bol26]
          Length = 621

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 398/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|198284890|ref|YP_002221211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668068|ref|YP_002427570.1| glucose-inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254811502|sp|B7JB95|MNMG_ACIF2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|254811503|sp|B5ER53|MNMG_ACIF5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|198249411|gb|ACH85004.1| glucose inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520281|gb|ACK80867.1| glucose-inhibited division protein A [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 624

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/622 (48%), Positives = 408/622 (65%), Gaps = 3/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIV+GGGHAG EAAA AA+LG  T L+T    TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MQNSFDVIVVGGGHAGTEAAAAAARLGVRTLLLTQNLDTIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M    D AGIQFR LN  KGPAVR  R QADR LY+ A++R +     L + Q
Sbjct: 61  VDALGGIMALAIDQAGIQFRTLNASKGPAVRATRAQADRSLYKRAVRRLLEDIPALQLFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E + +  ++++   ++R + VVLTTGTFL G +H+G    PAGR GD PSN+
Sbjct: 121 GMVGDLLMEGDRLGGVILETGLVLRAAQVVLTTGTFLGGRVHMGDQNYPAGRAGDPPSNA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L     +  F   RLKTGTP R+DG++I +   E Q  D     FSFMT +I   Q+ C 
Sbjct: 181 LAQRLREMAFPVARLKTGTPPRIDGRSIDYGVLEAQPGDAPPPAFSFMTRRIGVPQLACH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N+  SA+Y G I+S GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+
Sbjct: 241 ITHTNARTHEIIQTNLHQSAMYGGHIQSVGPRYCPSIEDKVVRFADKASHQVFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VYPNGIST+LP  +Q + +R++ GLE   ++RPGYAIEYDY++P+EL P+LE++++ 
Sbjct: 301 THEVYPNGISTSLPFGVQIELVRSMRGLENAVLLRPGYAIEYDYLDPRELHPSLESRRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG+N+AR++ +L      R ++Y+GVM+DDL ++G+ 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLLAGLNAARRARELAAWTPGRHEAYLGVMVDDLVTRGLD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLTP G  LG + ++R   F+         R+ L+ L
Sbjct: 421 EPYRMFTSRAEYRLQLREDNADLRLTPHGRALGLVDDQRWTAFSAKQDAVQAERNRLEGL 480

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   +  +  I+ K D    +  TA E L  PD+   +L  +        +   E+L+I
Sbjct: 481 RIHPGSAIAGRIAAKTDQPLSRDVTALELLRRPDWDYASLLQVLDLVPCSDAQACEQLEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  YA Y  RQ  E       E   IP D DY+++  LS E+ ++L+  +P  +  AS+I
Sbjct: 541 ECKYAGYVARQHDEITRAARWEGTDIPADMDYAAVRGLSTEVMQRLARQRPQTIGLASRI 600

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+TPAA++LLLI++K+  ++ 
Sbjct: 601 PGVTPAAVSLLLIHVKRRGLRQ 622


>gi|94967111|ref|YP_589159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Koribacter versatilis Ellin345]
 gi|166222901|sp|Q1IVL5|MNMG_ACIBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94549161|gb|ABF39085.1| glucose inhibited division protein A [Candidatus Koribacter
           versatilis Ellin345]
          Length = 649

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/647 (45%), Positives = 388/647 (59%), Gaps = 24/647 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV+V+G GHAGCEAA  AA++G  TAL T     I  MSCNPA+GG+ KGHLVRE
Sbjct: 3   FTEQYDVVVVGAGHAGCEAAMAAARMGLRTALYTLNVDLIAQMSCNPAVGGIAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG V DA GIQFR+LN  +GPAV  PR Q D++ YRL M+  + S+ NL + Q
Sbjct: 63  VDALGGIMGEVTDAVGIQFRLLNTSRGPAVWSPRAQCDKQQYRLKMREVLESEPNLKIKQ 122

Query: 122 GEVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EVA    E            I   I ++D   +    VV+TTGTFL G+IH G+ + PA
Sbjct: 123 AEVADLIVEDVSDPTHPERMKIARGIKLRDGRTVGALAVVITTGTFLNGLIHCGEEQYPA 182

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G+  S  L  S  K      RLKTGTP RLDG++I W K   Q  D    PFSF T 
Sbjct: 183 GRSGEPASVLLGESLKKMGLRGCRLKTGTPPRLDGRSIDWSKFAVQPGDAEPTPFSFRTK 242

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           KIT +Q+ C I  T  ETH++I EN+  S +YSG I+S GPRYCPSIEDKIV+F ++  H
Sbjct: 243 KITQKQVPCYIAHTTPETHQLIRENVHRSPMYSGQIQSTGPRYCPSIEDKIVKFPDKETH 302

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGLNT  VY NG+ST+LP ++Q + + +I GLE   ++RPGYAIEYD I+P EL
Sbjct: 303 QIFLEPEGLNTYEVYVNGMSTSLPIDVQLRMVHSIVGLENAEMLRPGYAIEYDSIDPTEL 362

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETKKI  L+L GQINGT+GYEEAA QGL+AGIN+A        +   RT++Y  ++
Sbjct: 363 QRTLETKKIGSLYLGGQINGTSGYEEAACQGLMAGINAALAVKHEPPLVLDRTEAYTAIL 422

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL SKG  EPYRMFTSRAE+R+ LR DNAD RLTP G ++G I +          Q  
Sbjct: 423 IDDLISKGTNEPYRMFTSRAEFRLHLRIDNADRRLTPHGRRVGLIKDEAWHAHLAKQQRM 482

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--------- 522
           + L+  L+   + +  L         +    T  + L  P+  +     I          
Sbjct: 483 DELKMTLEKTRIRTSELPVELAEKFGNIDGSTVVQLLKRPESDVAAFEQIIRRVQPTFFE 542

Query: 523 --PDARKFSSLVIER---LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
                R+F S +      ++ E  YA Y  +Q      +K  E+R+IP+ FDY+S+  LS
Sbjct: 543 RGDSEREFVSDIRNELKAVETEIKYAGYLDQQTKAIDRLKRSEQRVIPEWFDYASVSGLS 602

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
            E+ EK+  ++P  + QAS+I G+TPAA++L+ +YI+    K     
Sbjct: 603 REMCEKMQRVRPQTIGQASRIPGVTPAAVSLINVYIEIQGRKQKATT 649


>gi|282898664|ref|ZP_06306652.1| Glucose-inhibited division protein A subfamily [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196532|gb|EFA71441.1| Glucose-inhibited division protein A subfamily [Cylindrospermopsis
           raciborskii CS-505]
          Length = 648

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/621 (42%), Positives = 364/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIV+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 21  FQDAYDVIVVGAGHAGCEAALAAARLGCPTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 80

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 81  VDALGGEIGKMADRTYLQKRVLNSSRGPAVWALRAQTDKREYAAVMKGIVENQENLTIRE 140

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      + + I  +         C  V+LTTGTFL G I +G   + AGR G+  + 
Sbjct: 141 AMVTDLVLGKNDEIIGVETYFGVAFACKAVILTTGTFLGGRIWVGNKSMEAGRAGEFAAV 200

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+TGRLKTGTPAR+D +++ + K E Q  D  +  FSF     +   QI 
Sbjct: 201 GLTTTLHRLGFETGRLKTGTPARVDKRSVDYSKMEIQPGDGEVRWFSFDPQVWVEKEQIP 260

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETHR+I EN+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPEG
Sbjct: 261 CYMTRTTPETHRLIQENLGLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPEG 320

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +R++PGLEK  ++RP YA+EYDY+   + +P+L TKK
Sbjct: 321 RDIPELYIQGFSTGLPETLQILMLRSLPGLEKCVMLRPAYAVEYDYLPATQCYPSLMTKK 380

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF AGQINGTTGYEEAAAQGLVAGIN+ + +   + + F R  SYIG +IDDL +K 
Sbjct: 381 IEGLFCAGQINGTTGYEEAAAQGLVAGINAVQFAQGREMVIFPREQSYIGTLIDDLCTKD 440

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+EYR+ LR DNAD R+TP+G  +G I +RR   F +  ++    +  L 
Sbjct: 441 LREPYRMLTSRSEYRLLLRSDNADQRMTPLGRAIGLIDDRRWNLFTRKQEQIIGEKERLH 500

Query: 480 SLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           S  +         I+         + T  + L  P+    +L               E  
Sbjct: 501 STRIKEHEDIGRLITQHTQQVIKGSITLADLLRRPEIHYSDLERYGLGNPHLHGAEKEGA 560

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +  +I  +  R +P + DY+S+  LS E +EKL+ +KP  + QAS
Sbjct: 561 EIDIKYSGYLARQQNQIDQIARQANRHLPPNLDYNSITTLSKEAREKLTTVKPLTVGQAS 620

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+ PA +N LL+Y++   
Sbjct: 621 RIGGVNPADINALLVYLETRQ 641


>gi|225552148|ref|ZP_03773088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia sp. SV1]
 gi|225371146|gb|EEH00576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia sp. SV1]
          Length = 621

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 398/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E+R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEKRYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLGD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIVEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|293334449|ref|NP_001169694.1| hypothetical protein LOC100383575 [Zea mays]
 gi|224030947|gb|ACN34549.1| unknown [Zea mays]
          Length = 710

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/620 (42%), Positives = 372/620 (60%), Gaps = 4/620 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 60  QERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEV 119

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++ D   +Q RVLN  KGPAVR  R Q D+  Y + M+  + S ENL + + 
Sbjct: 120 DALGGEIGKITDRCYLQKRVLNSSKGPAVRALRAQTDKREYAIEMKNSVESTENLFIREA 179

Query: 123 EVAG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + I  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+ 
Sbjct: 180 MATEVLIGKNDSIEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHG 239

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +     F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  +   Q+ C
Sbjct: 240 LTENLQFLGFETDRLKTGTPPRIDRRTVDFSGLEPQHGDEEVGWFSFDPEFHVEREQMCC 299

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH+I+++N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 300 YLTRTTKETHQIVIDNLDETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGR 359

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +Y  G ST LPE +Q   +RTIPGLE   ++RP YA+EYDY+   +   +L TKKI
Sbjct: 360 NVPELYLQGFSTGLPERLQLSLVRTIPGLENCLMLRPAYAVEYDYLPAYQCSRSLMTKKI 419

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQG+++GIN+AR S+    I   R  SYIG +IDDL +K +
Sbjct: 420 EGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIILERESSYIGTLIDDLVTKDL 479

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR + +          +  L+S
Sbjct: 480 REPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWELYQSKQARIKQEKERLRS 539

Query: 481 LVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             +         T++S +    + T    L  P    + L          S +  E ++I
Sbjct: 540 TKVPGGEFAAEVTAVSNQPVKDSSTLEAILKKPHVQYKLLDEHGCGNENLSRIEKECVEI 599

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  +  +I  +E R +P+D DY S+  LS E +EKLS ++P  + QAS+I
Sbjct: 600 DIKYEGFIARQQSQLHQIVNQEHRKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRI 659

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G++PA + +LLI+++ N  
Sbjct: 660 GGVSPADMTVLLIWMESNRR 679


>gi|149194011|ref|ZP_01871109.1| Glucose-inhibited division protein A subfamily [Caminibacter
           mediatlanticus TB-2]
 gi|149135964|gb|EDM24442.1| Glucose-inhibited division protein A subfamily [Caminibacter
           mediatlanticus TB-2]
          Length = 623

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/621 (46%), Positives = 386/621 (62%), Gaps = 7/621 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAA  AA++G +T L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   KEFDVIVVGGGHAGIEAANAAARMGKNTLLLTMLVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG   D AGIQFRVLN  +GPAVRG R Q D + YR+ M+  IL+  NL V Q  
Sbjct: 62  ALGGLMGLATDNAGIQFRVLNENRGPAVRGSRAQIDMDRYRIWMRNAILNTPNLTVAQEI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  +     +  RC  ++LTTGTF+RG++H G +KI  GR  + P+  + 
Sbjct: 122 VDEILVKNGKVYGVKTNLLNEYRCKALILTTGTFMRGLMHFGPVKIEGGRFHELPAKKIS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
            S     F   RLKTGT AR+D +TI + K E Q  DE   PFSF TDK     +Q+ C 
Sbjct: 182 KSLENLGFKLERLKTGTTARIDARTIDFSKMEIQPGDENPKPFSFRTDKKTFNPKQLPCF 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II  N   + +++G I+  GPRYCPSIEDK+ +F ++  H +F+EP+ L 
Sbjct: 242 ITYTNETTHDIIKGNFHRAPLFTGQIEGIGPRYCPSIEDKLNKFPDKERHHVFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q  FI TIPGLE   I+R GYAIEYD+I P  L  +LET+ I 
Sbjct: 302 ATEYYLNGLSTSLPMDVQEDFIHTIPGLENAKIVRFGYAIEYDFIQPTNLKHSLETRAIE 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQG++AGIN+A K ++ + +   R ++YIGV+IDDL +KG  
Sbjct: 362 GLFFAGQINGTTGYEEAAAQGIMAGINAALKIDEKEPLILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+ LR DNA  RL   G KLG + E   KR  K  +E N    ++   
Sbjct: 422 EPYRMFTSRSEYRLLLREDNAILRLGDYGYKLGLLDEETYKRIEKLKEEINRGMKIVNET 481

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +T     N+   S+  ++        + +    F+   LF + P+ + FS   IE++ I
Sbjct: 482 FVTPNKEINVLLESLGEEKIQNKMEIRKIIGRHTFNKDKLFKLLPELKSFSDEAIEQILI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ES Y  Y  +Q     ++K      IP+DF+Y  +P LS E+ EKL   +P  L QAS+I
Sbjct: 542 ESRYHHYIEKQKQHIDKMKEMLSVKIPEDFEYKGIPGLSREIVEKLEKYRPATLFQASEI 601

Query: 599 EGMTPAALNLLLIY--IKKNT 617
            G+TPAA++++ +Y  IK+N 
Sbjct: 602 SGVTPAAIDIIHMYINIKRNK 622


>gi|111115000|ref|YP_709618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii PKo]
 gi|123145773|sp|Q0SNY6|MNMG_BORAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110890274|gb|ABH01442.1| glucose inhibited division protein A [Borrelia afzelii PKo]
          Length = 621

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/623 (46%), Positives = 398/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALAISRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHRKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE +Q + I +I GLE   I RPGYA+EYDYINP EL+P+LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENVQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPSLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K+++   +   +    +  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDIADEQL---KKHVNKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDIKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLHNLELVKLPFDFNYGIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 NTDITVLFIYF---SNPKNKVVL 617


>gi|149204376|ref|ZP_01881343.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
 gi|149142261|gb|EDM30308.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
          Length = 623

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/621 (53%), Positives = 436/621 (70%), Gaps = 1/621 (0%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M + + +DVIVIGGGHAG EAA  AA++G  TAL+T   + IG MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKHFDVIVIGGGHAGAEAAHAAARMGVRTALVTLNRAGIGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M RE+ S   L++
Sbjct: 61  REIDALDGVMGRVADRAGIQFRLLNRRKGPAVQGPRAQADRKIYREEMLRELESCPTLEI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++GE A F  +   ++ + + D   I  S VVLTTGTFLRGVIHIG    P GRMGD P+
Sbjct: 121 VEGEAADFVMQGERVAGVRLADGGEISASAVVLTTGTFLRGVIHIGDESYPGGRMGDRPA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      F    GRLKTGTP RLDGKTI W + E+Q  D   + FSF++ + T RQ+ 
Sbjct: 181 VMLAERMDGFGLPMGRLKTGTPPRLDGKTIDWSRLEEQPGDNDPVLFSFLSKRPTARQVC 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQ+FLEPE 
Sbjct: 241 CGITHTNAQTHDIIRENLDRSAMYGGHIDGIGPRYCPSIEDKIVRFSDKTSHQVFLEPES 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+  V+YPNGIST+LP  +Q  ++R+I GLE V I++PGYAIEYDY++P+ L   L  K 
Sbjct: 301 LSDHVIYPNGISTSLPAVVQEAYVRSIVGLEHVEILQPGYAIEYDYVDPRALDSRLAVKA 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLFLAGQINGTTGYEEAAAQGLVAG+N+A ++   + + FSRTDSYIGVMIDDLT++G
Sbjct: 361 VPGLFLAGQINGTTGYEEAAAQGLVAGLNAALEAKGREPVQFSRTDSYIGVMIDDLTTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+G+ LGC+G+ R+  F   ++     R  L+
Sbjct: 421 VSEPYRMFTSRAEFRLSLRADNADQRLTPLGLDLGCVGDDRRAVFGDKMERLVQGRQRLE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +   T + LS +     QDG  R+A++ LS+PD    +L  +     +      ++L  +
Sbjct: 481 ATTFTPRKLSESGFKVNQDGARRSAFQILSFPDVEFSDLLRLDQGYSEIDPECQQQLARD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA+Y  RQ  +   +K +E  +IP++F Y  +  LSNELK KL+ ++P NL QA++IE
Sbjct: 541 ALYASYIERQARDVAMMKRDEAHVIPENFAYDRIEGLSNELKGKLAQVQPENLAQAARIE 600

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           GMTPAAL+L+L  +++   + 
Sbjct: 601 GMTPAALSLILAKLRQAAREK 621


>gi|89067425|ref|ZP_01154938.1| glucose-inhibited division protein A [Oceanicola granulosus
           HTCC2516]
 gi|89046994|gb|EAR53048.1| glucose-inhibited division protein A [Oceanicola granulosus
           HTCC2516]
          Length = 622

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/618 (52%), Positives = 429/618 (69%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + SYDV+VIGGGHAG EAA  AA+LG S AL+T   + IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSSYDVVVIGGGHAGSEAAHAAARLGCSVALVTLSAAGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVADAAGIQFR+LN +KGPAV+GPR QADR+LYR AMQ  + +Q NL + 
Sbjct: 61  EIDALDGVMGRVADAAGIQFRLLNRRKGPAVQGPRAQADRKLYRHAMQDALAAQPNLRIF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GE      +   +  + + D   +    V+LTTGTFLRGVIHIG +  P GR+G+SPS 
Sbjct: 121 EGEAVDLLVKAGKVDGVRLADGGEVASKAVILTTGTFLRGVIHIGDVARPGGRIGESPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +     +F    GRLKTGTP RLDG+TI WD  E Q  D+    FSF++ + T RQI C
Sbjct: 181 RMAERIDEFGLPLGRLKTGTPPRLDGRTIRWDVLEMQPGDDEPTMFSFLSSQPTARQISC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN  TH II +N+  SA+Y G I   GPRYCPSIEDK+VRF E+  HQ+FLEPEGL
Sbjct: 241 GITHTNERTHDIIRDNLSRSAMYGGHIGGTGPRYCPSIEDKVVRFSEKPSHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPE++Q  ++R+I GLE V I++PGYAIEYDY++P+ L PTLE K +
Sbjct: 301 DDPTVYPNGISTSLPEDVQDAYVRSITGLEDVKILQPGYAIEYDYVDPRALRPTLEVKDV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQINGTTGYEEAAAQGLVAG+++   +   + + FSRT SYIGVM+DDL ++GV
Sbjct: 361 AGLYLAGQINGTTGYEEAAAQGLVAGLSAGAAALGREPLTFSRTTSYIGVMVDDLITRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT  G + GC+GE R   +++        R  L+ 
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADQRLTEQGRQAGCVGEERWSSYSRKRDALATGRRELER 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
               +++L+    +   DG  R+  E L+  D S ++L ++ P+    +  +  +L+ ++
Sbjct: 481 RTFKARDLAGRGANLNSDGAARSGTEALALTDISFEDLIALDPELATVAPDIQRQLKNDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +   ++ ++ +++P+  DY  +  LSNEL EKL+  +P  +  AS+IEG
Sbjct: 541 LYANYIERQAQDIAALRRDDAQVLPEKLDYREIQGLSNELAEKLNHSRPATIAHASRIEG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAAL +LL  IK++ +
Sbjct: 601 MTPAALLILLAKIKRDHL 618


>gi|221217547|ref|ZP_03589017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 72a]
 gi|225548536|ref|ZP_03769584.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 94a]
 gi|225549808|ref|ZP_03770772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 118a]
 gi|221192610|gb|EEE18827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 72a]
 gi|225369616|gb|EEG99065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 118a]
 gi|225370799|gb|EEH00234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia burgdorferi 94a]
          Length = 621

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 396/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRADMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ + I +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  R+         ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSRYLFKESRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L  K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LGLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K +   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKRLDNLELVKLPFDFNYEIIEGLSREAREKFSKIQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +LLIY    +   N++V+
Sbjct: 598 STDITVLLIYF---SNPKNKVVI 617


>gi|224534360|ref|ZP_03674938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia spielmanii A14S]
 gi|224514462|gb|EEF84778.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia spielmanii A14S]
          Length = 621

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/623 (46%), Positives = 400/623 (64%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLSFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLSEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE+IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPEDIQQKFINSIKGLEHAVITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKEKRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K++    +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVVDEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLHNLELIKLPLDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 NTDITVLFIYF---SNPKNKVVL 617


>gi|256829824|ref|YP_003158552.1| glucose inhibited division protein A [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579000|gb|ACU90136.1| glucose inhibited division protein A [Desulfomicrobium baculatum
           DSM 4028]
          Length = 626

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/615 (45%), Positives = 380/615 (61%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++D+IV+G GHAGCEAA  AA +G  T L+T     IG +SCNPAIGGL KGH+V+EID
Sbjct: 8   ETFDIIVVGAGHAGCEAAMAAAHMGMQTLLLTINADRIGHLSCNPAIGGLAKGHMVKEID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+ AD AGIQFR+LN +KGPAVR  R Q DR  Y   +Q++I +  NL V Q  
Sbjct: 68  ALGGMMGKWADQAGIQFRILNTRKGPAVRSSRAQIDRAEYVKVVQQDIFTCPNLFVRQET 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E   ++ +V      I C   +LTTGTFL+G+IH+G      GR GD  S+ L 
Sbjct: 128 AASLTVEDGRVTGVVTTLGETIPCRAALLTTGTFLQGLIHVGLNNFSGGRYGDPASSGLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +  F+ GRLKTGT  RL   ++ +   E+Q  D    PFSF +  I  +Q+ C +T
Sbjct: 188 PRLRELGFELGRLKTGTVPRLLKSSVDYSVMEEQAGDNPPRPFSFDSPGIRLQQLPCFVT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   TH II      S +++G IK  G RYCPSIEDKI RF E++ HQIF+EPEGL + 
Sbjct: 248 YTTERTHEIIRTGFDRSPMFTGVIKGTGARYCPSIEDKIARFPEKDRHQIFVEPEGLTSH 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGI T+LP +IQ   + +IPGLEK  IIRPGYAIEYDY+ P +L PTLE+K + GL
Sbjct: 308 EVYPNGIPTSLPLDIQKALVASIPGLEKAQIIRPGYAIEYDYVPPTQLRPTLESKLVRGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           ++AGQINGT+GYEEAA QGL A IN+         +  +R+ +YI V++DDL +KG LEP
Sbjct: 368 YMAGQINGTSGYEEAAGQGLWAAINAVLALRGEPELILTRSQAYIAVLVDDLVTKGTLEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT IG  LG + + R +RF +     N + + +++L +
Sbjct: 428 YRMFTSRAEHRLLLREDNADERLTAIGRDLGLVDDSRWQRFTRKQTAVNEIMAGMEALRV 487

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +     ++      K  +  E L  P+ +I  L  + P+   F    +E  +I++
Sbjct: 488 RPDAATRNLVEAMGGTIPQKAVSLKELLRQPELTIDMLTPLWPELENFDGEALEEAEIKT 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ       +  E+  +P+D +Y+ +P LS E+ EKL+ ++P  L QA +I G
Sbjct: 548 KYEGYLRRQQELVDRFEKMEQTTLPEDMNYTGIPGLSREVVEKLTRVQPRTLGQAGRISG 607

Query: 601 MTPAALNLLLIYIKK 615
           +TPAAL+ L I +KK
Sbjct: 608 ITPAALSCLEIQLKK 622


>gi|254453530|ref|ZP_05066967.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 238]
 gi|198267936|gb|EDY92206.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Octadecabacter antarcticus 238]
          Length = 622

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/616 (53%), Positives = 422/616 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVI+IGGGHAGCEAA  +A+ G  T LIT + + +G MSCNPAIGGLGKGHLVRE
Sbjct: 1   MKHTYDVIIIGGGHAGCEAAHASARSGVRTLLITLRLTDLGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR AD AGIQFR+LN +KGPAV+GPRTQADR LYR A+Q    ++ NLD+ +
Sbjct: 61  IDALDGIMGRAADRAGIQFRLLNRRKGPAVQGPRTQADRALYRNAVQELTAARSNLDLRE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   ++ +V++D S I  +TVVLT+GTFLRGVIHIG +    GRMGD PS +
Sbjct: 121 GEVVDLTLENGRVTGVVLKDGSKISATTVVLTSGTFLRGVIHIGDVAKAGGRMGDLPSIA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L      +D   GRLKTGTP RLDG+TI WD  E+Q AD     FSFM      +QI CG
Sbjct: 181 LAERLSSYDLPLGRLKTGTPPRLDGRTINWDGLERQDADVDPELFSFMHRTTFAKQIACG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN ETH II +N+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPE L 
Sbjct: 241 ITHTNSETHEIIAKNLDRSAMYGGHIDGVGPRYCPSIEDKVVRFADKKSHQIFLEPESLT 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP ++Q Q++ +I GLE   I++PGYAIEYDYI+P+ L   LE K++ 
Sbjct: 301 DYTIYPNGISTSLPVDVQEQYVHSIVGLENAKILQPGYAIEYDYIDPRSLSTQLELKRMP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQG+VAG+N+A  +   D + F R+ SYIGVMIDDLT +GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGIVAGLNAAACAGNCDPVLFDRSTSYIGVMIDDLTVRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLT  G  +GC+ + R   ++K   E +  R  L  +
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADQRLTSFGRSVGCVEDARWMVYSKKKIELDRGREELSGI 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +S+ L+   +    DG  RT  + L+    ++ +L +I P   +    +  +L+ ++ 
Sbjct: 481 TASSRALNDVGVKVSVDGPKRTLADALTIAGTTVNDLAAIAPQLSEIPKDIASQLERDAL 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQM + + +K +  +LIP +  Y S+  LSNELK KL    P NL QA++I+G+
Sbjct: 541 YSHYVERQMRDIEGMKRDSGKLIPHNMSYDSIAGLSNELKSKLKTALPDNLSQAARIDGI 600

Query: 602 TPAALNLLLIYIKKNT 617
           TPAAL L+   IKK  
Sbjct: 601 TPAALMLVAAEIKKRQ 616


>gi|216264023|ref|ZP_03436017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii ACA-1]
 gi|215980067|gb|EEC20889.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia afzelii ACA-1]
          Length = 621

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/623 (46%), Positives = 398/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALAISRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIEGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF   K+   Q+ C +
Sbjct: 182 DKTLLGLGFEMGRLKTGTPARIHRKSVDFSKTEVQFGDSDIIPFSFSNGKLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE +Q + I +I GLE   I RPGYA+EYDYINP EL+P+LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENVQQKLINSIEGLEHAVITRPGYAVEYDYINPIELYPSLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFIAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K+++   +   +    +  Y  L  P  ++ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDIADEQL---KKHVNKDFYHILKDPSINLDNLIKIDPSLSD-SKVILEQVELDIKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLHNLELVKLPFDFNYGIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 NTDITVLFIYF---SNPKNKVVL 617


>gi|268320268|ref|YP_003293924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Lactobacillus johnsonii FI9785]
 gi|262398643|emb|CAX67657.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Lactobacillus johnsonii FI9785]
          Length = 632

 Score =  740 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 6   SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 66  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 126 VADELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C
Sbjct: 186 PENLEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 HTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +     +K 
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKK 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +  +       V E+++
Sbjct: 486 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGETLATDRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAILTAYIQQGRI 626


>gi|227889161|ref|ZP_04006966.1| glucose-inhibited division protein A [Lactobacillus johnsonii ATCC
           33200]
 gi|227850390|gb|EEJ60476.1| glucose-inhibited division protein A [Lactobacillus johnsonii ATCC
           33200]
          Length = 634

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 8   SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 68  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHERMKDTIENEPNLTLRQA 127

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 128 VADELIVEDGVCKGLITNTGAKYYAKSVVLTTGTAARGKIIIGELAYSSGPNNSLPSIKL 187

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG TI + KT+++  D+    FS+ +        Q+ C
Sbjct: 188 PENLEKLGFKLRRFKTGTPPRVDGNTIDYSKTQEEPGDKEPRHFSYTSKDSDYLEDQMSC 247

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 248 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 307

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 308 HTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 367

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 368 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 427

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R K F    Q  +     +K 
Sbjct: 428 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEDRYKEFQDKKQAISQAMEAIKK 487

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +  +       V E+++
Sbjct: 488 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGETLATDRYVKEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 548 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 607

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 608 ISGVNPADLAILTAYIQQGRI 628


>gi|51598439|ref|YP_072627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii PBi]
 gi|81170527|sp|Q662I6|MNMG_BORGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51573010|gb|AAU07035.1| glucose inhibited division protein A [Borrelia garinii PBi]
          Length = 621

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/623 (46%), Positives = 398/623 (63%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLDFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q+NLD+ Q  V
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQDNLDLFQDTV 121

Query: 125 AGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             F        I  +V +  +  R + VVLTTGTFLRG I IG+ +   GR+ +  +  L
Sbjct: 122 VDFLLNSMRNEIKGVVTERGNKFRSNVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +   F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF    +   Q+ C +
Sbjct: 182 DKTLLSLGFEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYV 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT
Sbjct: 242 TYTNKRTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ G
Sbjct: 302 EEMYLNGLSSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ NG++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  E
Sbjct: 362 LFVAGQTNGSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   
Sbjct: 422 PYRMFTSRAEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+ K+++   +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y
Sbjct: 482 LSLKDVADEQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ    K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+ 
Sbjct: 538 EGYINRQKDLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIR 597

Query: 603 PAALNLLLIYIKKNTVKLNEIVL 625
              + +L IY    +   N++VL
Sbjct: 598 NTDITVLFIYF---SNPKNKVVL 617


>gi|300362684|ref|ZP_07058860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri JV-V03]
 gi|300353675|gb|EFJ69547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri JV-V03]
          Length = 633

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 360/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 8   SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 68  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQA 127

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E  +   ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 128 VADELIVENGVCKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKL 187

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C
Sbjct: 188 PENLEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSC 247

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 248 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 307

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 308 NTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 367

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 368 EHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 427

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G KLG I E R  +F    Q  +   + +K 
Sbjct: 428 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHKLGLISEERYAKFEAKKQAISRAMAAIKK 487

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +          V E+++
Sbjct: 488 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVE 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 548 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 607

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 608 ISGVNPADLAILTAYIQQGRI 628


>gi|315497188|ref|YP_004085992.1| glucose inhibited division protein a [Asticcacaulis excentricus CB
           48]
 gi|315415200|gb|ADU11841.1| glucose inhibited division protein A [Asticcacaulis excentricus CB
           48]
          Length = 620

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/613 (53%), Positives = 418/613 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +DVIV+GGGHAG EAA  AA++GA T L+THK  T+G MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTQFWDVIVVGGGHAGAEAATAAARMGAKTLLLTHKIETLGEMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR+AD  GIQF++LN  KGPAVRGPR Q DR+LYR AMQ E+ S ENL +I 
Sbjct: 61  IDALDGVMGRMADIGGIQFKMLNRSKGPAVRGPRAQIDRKLYREAMQAELQSTENLTIIA 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +   V       R   VVLTTGTFLRG+IHIG+ ++ AGR GD P+N 
Sbjct: 121 AAVEDLILEGDTVVGTVDAQGVEYRSKAVVLTTGTFLRGIIHIGEKRMAAGRFGDEPANG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L         D GRLKTGTPARLDGKTI WD  EKQ  D    PFS +   I   QI CG
Sbjct: 181 LGQRLYDLKLDMGRLKTGTPARLDGKTINWDVLEKQEGDAIPTPFSTLNAAINRPQITCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +THRII E I  SA+Y G +   GPRYCPSIEDK+VRF +++ HQ+FLEPEG +
Sbjct: 241 ITYTNADTHRIIQERITESAVYGGHLSGRGPRYCPSIEDKVVRFSDKDSHQVFLEPEGYD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNGIST++ E  Q  F+RTI GLE V I R  YAIEYDY++P+EL+PTLE K++ 
Sbjct: 301 DDTVYPNGISTSVSEATQEAFLRTIRGLENVVIKRYAYAIEYDYVDPRELYPTLELKRLP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGL+AG+N+A ++  L  +   R ++YIGVMIDDL +KGV 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLMAGLNAAARAGGLSPLVLGRDEAYIGVMIDDLVTKGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RL+ I +K G +GERR+  + +  Q     R   + L
Sbjct: 421 EPYRMFTSRAEFRLKLRADNADQRLSDIALKTGLMGERRKTHWLEKKQALAEARQRAEDL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            LT    ++  I    DG+ R   + LSY   S   L ++ P+ + +S  V E+++I++ 
Sbjct: 481 KLTPNEANALGIRVNADGQKRNLLQLLSYDTCSRDKLETVWPELKDWSDSVFEQVEIDAL 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y GRQ  E    + +E   +P+D DY+ +  LSNE +EKL  ++P  L QA +IEGM
Sbjct: 541 YSGYLGRQAAEIDAFRKDENLALPEDLDYARVGGLSNEAREKLGRVRPLTLGQARRIEGM 600

Query: 602 TPAALNLLLIYIK 614
           TP AL  LL +++
Sbjct: 601 TPGALTALLFHVR 613


>gi|313887617|ref|ZP_07821299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846226|gb|EFR33605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 634

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 379/621 (61%), Gaps = 6/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D +VIG GHAG EAA  +A+LGA T L+     ++  +SCNP IGG GKGHLVREIDA
Sbjct: 11  DFDTVVIGAGHAGSEAALASARLGAKTLLLCINLDSVAQLSCNPNIGGTGKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   IQ ++LN  KGPAV   R QAD+  Y   M+R + ++ENL +++ E 
Sbjct: 71  LGGEMAKNIDKTFIQSKMLNTSKGPAVHSLRVQADKRKYHDEMKRVLENEENLYLVEDEA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ ++ ++ S      VV+ +GT+LR  I +G++   +G  G  P+N L +
Sbjct: 131 IRILKEGNKVTGVLTRNGSKYNTKAVVICSGTYLRARIFMGEVNFSSGPSGFGPANHLSS 190

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
           S  + F     RLKTGTPAR+  K+I +    +Q  DE +IPFSF+    K    Q  C 
Sbjct: 191 SLEEDFGMKLQRLKTGTPARVLRKSIDFSVMTEQAGDEEIIPFSFLNIDKKYDIHQELCY 250

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  + H II  NI+ SA+  GDI+  GPRYCPSIEDK++RF +R+ HQ+F+EPEGL 
Sbjct: 251 LTYTTKKCHEIIRNNIERSALALGDIEGKGPRYCPSIEDKVMRFADRDSHQVFIEPEGLT 310

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP E+QH+F + I G+E   I+RP YAIEYD I+   L  +LE     
Sbjct: 311 TDEMYIQGVSSSLPVEVQHEFYKEIIGMENCKILRPAYAIEYDAIDATLLKRSLEHMDYD 370

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEA AQG+VAGIN+A K    D     R+++YIGV+IDDL +KG  
Sbjct: 371 GLFFAGQINGSSGYEEAGAQGIVAGINAALKVQGKDPFILDRSEAYIGVLIDDLVTKGTR 430

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR++LR DNAD RLT  G ++G + + R + +    +        +K +
Sbjct: 431 EPYRMMTSRAEYRLTLRQDNADLRLTEKGRQIGLVDDERYQGYLYRKKAIEDEIKRIKKI 490

Query: 482 VLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +     ++    S+   +   + + YE +  P+F  + L    PD       VI  ++I
Sbjct: 491 QINPTAENNKILESLGSTETQNSFSLYEMIKRPEFDYKKLAVFDPDRPLVRDDVIRNIEI 550

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q I+ K+ K  E + + K+ DY S+  L  E KEKLS ++P ++ QAS+I
Sbjct: 551 EIKYEGYIKKQEIQIKQFKKLENKKLDKNIDYKSIEGLRIEAKEKLSDIRPESIGQASRI 610

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++PA +N+LLI++++   K
Sbjct: 611 TGVSPADINVLLIHLEQMRRK 631


>gi|297835986|ref|XP_002885875.1| glucose-inhibited division family A protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331715|gb|EFH62134.1| glucose-inhibited division family A protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 730

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/625 (42%), Positives = 386/625 (61%), Gaps = 6/625 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +A+LGAST L+T     I    CNPA+GG  K  LV E+DA
Sbjct: 79  TYDVIVVGAGHAGCEAALASARLGASTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDA 138

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +G+VAD   +Q R+LNV +GPAVR  R Q D+  Y + M++ + S +NL + +  V
Sbjct: 139 LGGDIGKVADRCYLQKRILNVSRGPAVRSLRAQTDKREYAMEMKKIVDSTQNLCIREAMV 198

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 KN  +  +           +V+LTTGTF+ G I +GK  +PAGR G+S S  L 
Sbjct: 199 TDIIVGKNDNVEGVATFFGMNFYAPSVILTTGTFMSGKIWVGKKSMPAGRAGESASQGLT 258

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
            +  K  F+T RLKTGTPAR+D +TI +   E Q  DE +  FSF  D  I   Q+ C +
Sbjct: 259 ENLQKLGFETDRLKTGTPARVDRRTIDFSNLEAQHGDEEVSWFSFDPDFHIEREQMCCYL 318

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG + 
Sbjct: 319 TRTTKITHQLIRDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKESHQIFLEPEGRDV 378

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G ST LPE +Q   +R++PGLE  +++RP YA+EYDY+   +   +L TKKI G
Sbjct: 379 PEIYVQGFSTGLPENLQLPLLRSLPGLENCSMLRPAYAVEYDYLPAHQCSRSLMTKKIEG 438

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAAAQG+++GIN+AR ++    +   R  SYIG +IDDL +K + E
Sbjct: 439 LFFSGQINGTTGYEEAAAQGIISGINAARHADGKKHVVLERESSYIGTLIDDLVTKDLRE 498

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+E+R+ LR DNAD+RLTP+G +LG I +RR K + +     +  +  LK++ 
Sbjct: 499 PYRMLTSRSEHRLLLRFDNADSRLTPLGRELGLIDDRRWKLYQEKQARISEEKKRLKTVK 558

Query: 483 LTSK--NLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++    +L+S   S+S +    + T    L  P    + L          S +  + ++I
Sbjct: 559 ISVAVGDLASEVSSVSSQPVKVSATLESLLKKPHIHYKLLEKHGFGNETLSRMEKDCVEI 618

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  + +++  ++ R +P D DY S+  LS+E +EKLS ++P  + QAS++
Sbjct: 619 DIKYEGFIVRQQNQLQQMAHQQHRRLPDDLDYYSMTTLSHEGREKLSKVRPETIGQASRV 678

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G++PA +  LLI ++ N  +  ++
Sbjct: 679 GGVSPADITALLITLESNRRRTQDV 703


>gi|326793315|ref|YP_004311136.1| glucose inhibited division protein A [Clostridium lentocellum DSM
           5427]
 gi|326544079|gb|ADZ85938.1| glucose inhibited division protein A [Clostridium lentocellum DSM
           5427]
          Length = 636

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/617 (43%), Positives = 374/617 (60%), Gaps = 5/617 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGGHAGCEAA  AA++G  T + T    +I  M CNP +GG  KGHLVREIDAL 
Sbjct: 8   DIVVIGGGHAGCEAALAAARMGKKTIMFTMSLDSIAMMPCNPNVGGTSKGHLVREIDALG 67

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+  D   IQ R+LN  KGPAV   R QAD+  Y  AM++ + + E L + Q EV  
Sbjct: 68  GEMGKNIDRTYIQSRMLNTAKGPAVHSLRAQADKTKYSHAMKKVLENVEKLIIKQQEVVE 127

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +V    ++  C  +VL  GT++R     G+     G  G   SN L  + 
Sbjct: 128 VQVEDGKVKGVVTNTGAIYECKAIVLAGGTYVRSRCLTGECIEYTGPNGLKTSNKLSEAL 187

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECGITR 244
            +   +  R KTGTPAR+D +T+ + K E Q  DER++PFSF   +  I   Q  C +T 
Sbjct: 188 KELGIELRRFKTGTPARVDARTVDFSKMEPQHGDERIVPFSFENKEKDIKRDQYPCYLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQ+F+EPEG +T  
Sbjct: 248 TNEKTHQIIRDNLHRSPMYSGVIEGTGPRYCPSIEDKVVRFADKERHQVFIEPEGEDTTE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q   +RT+ GLE V ++R GYAIEYD INP +L  +LE K I G F
Sbjct: 308 MYVQGMSSSLPEEVQIAMLRTLKGLENVEVMRIGYAIEYDCINPMQLKHSLELKAIEGFF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NG++GYEEAAAQGLVAGIN+A K +  D +   R++ YIGV+IDDL +KG  EPY
Sbjct: 368 SAGQMNGSSGYEEAAAQGLVAGINAALKVDGRDPMIIDRSEGYIGVLIDDLVTKGTKEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G + G I   R +RFA      +     LK + + 
Sbjct: 428 RMMTSRAEYRLLLRQDNADLRLTQKGYEAGLISAGRYERFAAKKSAIDAELERLKHVYVG 487

Query: 485 SKNLSSTSISFKQDGKTRTAYEF---LSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +       +  K     R+       L  P+   ++   +  D    S  VIE++ IE  
Sbjct: 488 TSEKVQAILEKKGSTPLRSGIALAEILKRPELEYEDFTEVDTDRPDLSLDVIEQVMIELR 547

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQM + ++ K  EKRLIP D +Y  + +L  E K+KL  ++P ++ QAS+I G+
Sbjct: 548 YEGYITRQMRQVEQFKKLEKRLIPADINYDDVYSLRLEAKQKLEQVRPISIGQASRISGV 607

Query: 602 TPAALNLLLIYIKKNTV 618
           +PA +++LL+Y+++   
Sbjct: 608 SPADISMLLVYLEQRNR 624


>gi|262198171|ref|YP_003269380.1| glucose inhibited division protein A [Haliangium ochraceum DSM
           14365]
 gi|262081518|gb|ACY17487.1| glucose inhibited division protein A [Haliangium ochraceum DSM
           14365]
          Length = 640

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/634 (44%), Positives = 392/634 (61%), Gaps = 19/634 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +A+LGA T ++T     +  MSCNPAIGG+ KGH+V+EIDA
Sbjct: 7   SYDVIVVGAGHAGCEAALASARLGARTLVLTGNLEMVAQMSCNPAIGGVAKGHIVKEIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M ++ D  GIQ+R LN+ KGPAVR  R QAD+ LYR  M++ + +Q  L + Q EV
Sbjct: 67  LGGQMAQIIDRTGIQYRRLNLSKGPAVRSTRAQADKRLYRETMRQALDAQAGLYLRQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    E   I  +  +     R   V+LTTGTFLRG I++G  +   GR G++PS  L  
Sbjct: 127 SELLVEDGAIRGVGTKMGVSFRARAVILTTGTFLRGRIYVGDARAEGGRAGEAPSVGLSQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE---CG 241
           S     F   RLKTGTP RLDG+T+      +Q  D+    F+ + +      +    C 
Sbjct: 187 SLAANGFPLARLKTGTPCRLDGRTLDLAGLTRQPGDDPPPMFTNLAETGVAPPLPQHDCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ETHRII ++I  S ++ G I+  GPRYCPSIEDK+VRF +R  HQ+FLEPEG++
Sbjct: 247 LTYTTPETHRIIRDSIHRSPLHQGIIEGVGPRYCPSIEDKVVRFADRERHQVFLEPEGVD 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +   YPNGIST+LP ++Q   +RTIPGLE+  + RPGYA+EYD+++P+EL PTLET+++ 
Sbjct: 307 SREFYPNGISTSLPYDVQLAMLRTIPGLERAEMTRPGYAVEYDFVDPRELRPTLETRRVC 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARK----SNKLDCICFSRTDSYIGVMIDDLTS 417
           GL+L GQINGT+GYEEAA QGL+AGIN+A K       +D +   R  +Y GV++DDL +
Sbjct: 367 GLYLGGQINGTSGYEEAAVQGLLAGINAALKLGFGPGDMDELVLRRDQAYAGVLVDDLIT 426

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRMFTSRAEYR+ LR DNA  RL PIG +LG I ++R +RF  +  +       
Sbjct: 427 KGTKEPYRMFTSRAEYRLILREDNAACRLMPIGRRLGLIDDQRWRRFEAFRADLAAHSER 486

Query: 478 LKSLVLTSKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS 529
           +++  L+     +  +    S     +  T  E L  P+ S Q++  +            
Sbjct: 487 MQATSLSPDAAVNARLEACGSSPLKNRRATLVELLRRPELSYQDVAQVAEAGGLAPVPVP 546

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V ER++IE+ YA Y  RQ+ EA  +   E   +P D DY  +  LS E  EKLS  +P
Sbjct: 547 ERVAERIEIEAKYAGYLDRQVNEAARLARFEAVRLPDDLDYGEIRGLSREAVEKLSAARP 606

Query: 590 FNLLQASKIEGMTPAALNLLLIYI----KKNTVK 619
            ++ QA++I G+TPAA+++L+ ++    K+  ++
Sbjct: 607 RSVGQAARISGVTPAAVSILMTHLDIARKRQALR 640


>gi|258545473|ref|ZP_05705707.1| glucose inhibited division protein A [Cardiobacterium hominis ATCC
           15826]
 gi|258519173|gb|EEV88032.1| glucose inhibited division protein A [Cardiobacterium hominis ATCC
           15826]
          Length = 625

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/623 (47%), Positives = 401/623 (64%), Gaps = 10/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+GGGHAG EAA  AA++GA T L+TH   TIG MSCNPAIGG+GKGHLV+EIDA
Sbjct: 6   HYDVLVVGGGHAGVEAACAAARMGARTLLLTHNIETIGQMSCNPAIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M R AD AGIQ+R+LN +KGPAVR  R QADR LY+ A++  + +Q NLD+ Q  V
Sbjct: 66  LGGIMARAADRAGIQWRILNRRKGPAVRATRAQADRILYKAAVREIVENQPNLDIFQTPV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ +  Q       +  VLT GTFL G IH+G      GR GD P+N L  
Sbjct: 126 TDLILEGTRIAGVKSQHQIDYYATATVLTAGTFLGGKIHVGLNSFAGGRAGDPPANELAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
                 F   R+KTGTP RLD +T+ + + E Q  D  L  FS++ +   + RQ+ C IT
Sbjct: 186 RLHDLPFALARMKTGTPPRLDARTVDYSRMEAQPGDTPLPVFSYLGNAAEHPRQVACHIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           RTN  TH II   I  + +Y+G IK ++GPRYCPSIEDK++RF +++ HQIF+EPE L T
Sbjct: 246 RTNERTHDIIRAYIDQAPMYAGVIKDAFGPRYCPSIEDKVMRFADKDSHQIFIEPESLTT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNG+ST+LP   Q  +I+TIPGLE+  I RPGYAIEYDY +P+ L  +LE++ I  
Sbjct: 306 NELYPNGVSTSLPFAAQIAYIQTIPGLEQARITRPGYAIEYDYFDPQHLKHSLESRHIDN 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEA AQGL+AGIN+AR++  L+     R  +Y+GV+IDDL ++G  E
Sbjct: 366 LYLAGQINGTTGYEEAGAQGLLAGINAARRARDLEPWYPEREQAYLGVLIDDLITQGTRE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLT IG +LG +GE R + F++ ++     +  L+  +
Sbjct: 426 PYRMFTSRAEHRLLLREDNADARLTAIGHELGVVGEPRYRAFSEKMEAIAREQERLRHTL 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
           +  ++L   S +         A E L  P+     L ++   DA      VIE++ I + 
Sbjct: 486 IRQEHLPGLSQNLA-------ASELLKRPEIDYATLAALPGFDAPSLDEAVIEQIDIAAK 538

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E  ++K      +P   DY ++  LS E+ EKL  ++P NL QA++I G+
Sbjct: 539 YAGYIERQQSEVAKLKENRAHRLPVPCDYRAIHGLSAEVAEKLDKIQPENLDQAARIPGV 598

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           TPAAL++LLI++KK     + I 
Sbjct: 599 TPAALSILLIHLKKQKTPPSPIT 621


>gi|319790632|ref|YP_004152265.1| glucose inhibited division protein A [Thermovibrio ammonificans
           HB-1]
 gi|317115134|gb|ADU97624.1| glucose inhibited division protein A [Thermovibrio ammonificans
           HB-1]
          Length = 635

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/625 (47%), Positives = 387/625 (61%), Gaps = 11/625 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIV+G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KG +VR
Sbjct: 1   MWDEVFDVIVVGAGHAGCEAALAAARMGCKTALFTINVDRIAEMSCNPAIGGVAKGTVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR+LN KKGPAVR PR QAD+E YR  M+R I +   L VI
Sbjct: 61  EIDALGGEMAKNIDETGIQFRILNKKKGPAVRAPRAQADKEAYRNRMRRVIENTPGLQVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +V    +      VV+T GTFLRG I IG  +   GRM + P+N
Sbjct: 121 QQTVDDIVVENGTVKGVVTHIGARYGAKAVVVTAGTFLRGKIFIGFNEFEGGRMWEPPAN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L   + K  F   RLKTGTP R+DG+TI + K E+Q  DE    FS+ T+     QI C
Sbjct: 181 KLSLFYEKHGFRVARLKTGTPTRIDGRTIDFSKMERQDGDEPPPFFSYWTEPREAEQIPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            +T T  ETHRII EN+  S +Y     I   G RYCPSIEDKIV+F ++  H +F+EPE
Sbjct: 241 WLTYTTPETHRIIRENLHRSPMYGECKLISGVGVRYCPSIEDKIVKFPDKERHHVFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT   YPNG ST+LP ++Q   IR+IPGLE   IIRP YAIEYD+I+P+ L+PTLETK
Sbjct: 301 GRNTVEFYPNGTSTSLPYDVQVAIIRSIPGLENAEIIRPAYAIEYDFIDPRHLYPTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-ICFSRTDSYIGVMIDDLTS 417
            I GLF AGQINGTTGYEEAA QG+VAGIN+A  +   +      R ++YIGVMIDDL +
Sbjct: 361 LIKGLFNAGQINGTTGYEEAAGQGIVAGINAALYALGKEERFILGRDEAYIGVMIDDLVN 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSRAEYR+ LR DNAD RL   G K G +   + +R  +  +        
Sbjct: 421 KGVREPYRLFTSRAEYRLLLRYDNADYRLAKYGYKFGLLTREQYERVKRKYETVKVFIEK 480

Query: 478 LKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSS 530
           LK + L  + ++    S       ++++AYE L  P+  ++ +  + P     +  K   
Sbjct: 481 LKEVKLRPEQVNPILESEGSTPIKESKSAYELLKRPEVKLEEILKLIPFELNVEDEKLLR 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E ++IE  Y  Y  RQ+ E K+ +  E   IP+DFDY  +P +S E ++KL  +KP 
Sbjct: 541 EILEEVEIEVKYEGYIKRQLEEIKKFRKLENIKIPEDFDYDIVP-ISVEERQKLKEMKPV 599

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L QA+++EG+ PA++ +L IYI+K
Sbjct: 600 TLGQAARLEGIRPASIPVLAIYIQK 624


>gi|81301232|ref|YP_401440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus elongatus PCC 7942]
 gi|123556262|sp|Q31KG6|MNMG_SYNE7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|81170113|gb|ABB58453.1| glucose inhibited division protein A [Synechococcus elongatus PCC
           7942]
          Length = 635

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/626 (40%), Positives = 372/626 (59%), Gaps = 5/626 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIVIG GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  L  E+
Sbjct: 4   TEEFDVIVIGAGHAGCEAALAAARLGCQTLLLTLNLDRIGWQPCNPAVGGPAKSQLAHEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   +++ +  Q NL + +G
Sbjct: 64  DALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVIKQVLEQQPNLRLREG 123

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V        + +  +     S  R   V+LTTGTFL G I +G   +PAGR G+  +  
Sbjct: 124 MVTDLLIGPNDEVQGVTTYFGSSFRAKAVILTTGTFLGGCIWVGNKSMPAGRAGEFAAVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +  +  F+T RLKTGTPAR+D +++ + + E Q  D  +  FSF  +  +   Q+ C
Sbjct: 184 LTETLQRLGFETDRLKTGTPARVDKRSVDYSRLEPQPGDPEVRWFSFDPEAWVEREQLPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH++I +N+  + +Y G I + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 244 YLTRTTAETHKLIRDNLHLTPVYGGYIDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q   ++T+PGLE   ++RP YA+EYDY+   +  PTL T+++
Sbjct: 304 DIPELYIQGFSTGLPEDLQLALLQTLPGLEDCVMLRPAYAVEYDYLPATQCLPTLMTRRV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     D I F R  SYIG +IDDL +K +
Sbjct: 364 EGLFSAGQLNGTTGYEEAAAQGIVAGINAARFVQGQDAIVFPREGSYIGTLIDDLCTKDL 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        ++ L  
Sbjct: 424 REPYRVLTSRSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQ 483

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +    +I+ +       + T  + L  P+F   +L +        +    E  +
Sbjct: 484 QRVKEHDPVGQAIAQQTQAPIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  RQ  +  ++  + +R +P D DYS++ ++  E +EKL+  +P  L QAS+
Sbjct: 544 IAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLTLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNEI 623
           I G+ PA +N LLI+++    + +++
Sbjct: 604 IGGVNPADINALLIWLEVQERQRSQV 629


>gi|238853334|ref|ZP_04643714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 202-4]
 gi|205831544|sp|Q040F4|MNMG_LACGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238834022|gb|EEQ26279.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 202-4]
          Length = 631

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/621 (41%), Positives = 359/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 6   SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 66  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 126 VADELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C
Sbjct: 186 PENLEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 NTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K 
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKK 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +          V E+++
Sbjct: 486 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 546 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 605

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 606 ISGVNPADLAILTAYIQQGRI 626


>gi|327191201|gb|EGE58244.1| glucose inhibited division protein A [Rhizobium etli CNPAF512]
          Length = 625

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/618 (61%), Positives = 469/618 (75%), Gaps = 1/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MIGNVYDVIVIGGGHAGSEAASAAARLGARTALVTHRRETIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGR+ADAAGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD++
Sbjct: 61  EIDAMDGLMGRIADAAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ ++M+D  ++    VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 121 EGDAFDLDVVDNRVAGVIMKDGRLLSAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGK+I W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKSIDWQSVGRQGADEHLVPFSFMTDSITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIIDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIKTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL AG+N+A +S   D   FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSTDSDPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+G  R++RF  Y  E +  RSLL S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADVRLTPLGMRLGCVGSAREQRFTAYQVEVDAGRSLLMS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           L LT        +    DG+ RTAY+ LSYPD+    L  + PD        V E L+IE
Sbjct: 481 LTLTPNEARRAGLHINLDGQRRTAYDLLSYPDYDFAALRQVWPDALAAVRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFDYSALSGLSNELKAKLSTARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAA+ LLL+++++ +
Sbjct: 601 GMTPAAIALLLVHLRRQS 618


>gi|242059989|ref|XP_002459140.1| hypothetical protein SORBIDRAFT_03g046560 [Sorghum bicolor]
 gi|241931115|gb|EES04260.1| hypothetical protein SORBIDRAFT_03g046560 [Sorghum bicolor]
          Length = 713

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/623 (42%), Positives = 371/623 (59%), Gaps = 4/623 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 63  QERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEV 122

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++ D   +Q RVLN  KGPAVR  R Q D+  Y + M+  + S ENL + + 
Sbjct: 123 DALGGEIGKITDRCYLQKRVLNSSKGPAVRALRAQTDKREYAIEMKNVVESTENLFIREA 182

Query: 123 EVAG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + +  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+ 
Sbjct: 183 MATEVLIGKNDSVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHG 242

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +     F+T RLKTGTP R+D +T+ +   E Q  DE +  FSF  +  +   Q+ C
Sbjct: 243 LTENLQLLGFETDRLKTGTPPRIDRRTVDFSGLEPQHGDEEVGWFSFDPEFHVEREQMCC 302

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH+I+++N++ +  Y G +++ GPRYCP+IEDK VRF ++  HQIFLEPEG 
Sbjct: 303 YLTRTTKETHQIVIDNLEETPTYGGWVEAKGPRYCPAIEDKTVRFKDKESHQIFLEPEGR 362

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N   +Y  G ST LPE +Q   +RTIPGLE   ++RP YA+EYDY+   +   +L TKK 
Sbjct: 363 NVPELYLQGFSTGLPERLQLSLVRTIPGLENCLMLRPAYAVEYDYLPAYQCSRSLMTKKF 422

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQG+V+GIN+AR S+    I   R  SYIG +IDDL +K +
Sbjct: 423 EGLFFSGQINGTTGYEEAAAQGIVSGINAARHSDGKSLIILERESSYIGTLIDDLVTKDL 482

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR + +          +  LKS
Sbjct: 483 REPYRMLTSRSEHRLLLRADNADSRLTPLGREIGLIDDRRWELYQSKQARIKQEKERLKS 542

Query: 481 LVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             +         T++S +      T    L  P    + L          S +  E ++I
Sbjct: 543 TKVPGGEFAAEVTAVSNQPVKDLSTLEAILKKPHVQYKLLDKHGCGNENLSRIEKECVEI 602

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  +  +I  +E R +P+D DY S+  LS E +EKLS ++P  + QAS+I
Sbjct: 603 DIKYEGFIARQQSQLHQIVNQEHRKLPEDLDYHSMTNLSLEAREKLSKVRPQTIGQASRI 662

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G++PA + +LLI+++ N    N
Sbjct: 663 GGVSPADMTVLLIWMESNRRMAN 685


>gi|318040758|ref|ZP_07972714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CB0101]
          Length = 643

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/628 (42%), Positives = 374/628 (59%), Gaps = 9/628 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TEHFDVIVVGGGHAGCEAAITAARLGCSTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q R+LN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATALQKRILNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            V G   E        I+ +     S      VVLT GTFL G I +G   + AGR G+ 
Sbjct: 128 MVTGLEVEGTPGEDARITGVRTYFGSTYSAGAVVLTAGTFLGGQIWVGNQSMSAGRAGEQ 187

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNR 236
            +  L  +     F  GRLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  
Sbjct: 188 AAEGLTEALEALGFQMGRLKTGTPARVDRRSIALDQLEEQPSDAHERYFSFDPASWVSGE 247

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
            + C ITRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF ++  HQIFLE
Sbjct: 248 PMSCHITRTTAATHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFVDKESHQIFLE 307

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   +L P+LE
Sbjct: 308 PEGRDTPEIYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPATQLKPSLE 367

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK++ GL+ AGQ+NGTTGYEEAAAQGLVAG+N+ R+        F R  SYIG MIDDL 
Sbjct: 368 TKRVQGLYSAGQLNGTTGYEEAAAQGLVAGLNAVRQLRGETPTHFPREGSYIGTMIDDLI 427

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + + +          
Sbjct: 428 TKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWETYTRKQDAIAAETQ 487

Query: 477 LLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L+++ L   + ++T++   +      + T  + L  P F   +L             V 
Sbjct: 488 RLETVRLKVSDPAATAVVEQTGAAIKGSITLADLLRRPGFRSDDLVRHGLADADLPLDVR 547

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y+ Y  RQ  +  ++K +E + IP   DY+S+  LS E +EKL+ ++P NL 
Sbjct: 548 EGAEIDIKYSGYLARQQQQIDQVKKQEHKAIPDGIDYASISTLSREAREKLAAVQPLNLG 607

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLN 621
           QAS++ G++PA +  L+++++  + +  
Sbjct: 608 QASRVPGVSPADVTALMLWLELESRRQK 635


>gi|167754941|ref|ZP_02427068.1| hypothetical protein CLORAM_00445 [Clostridium ramosum DSM 1402]
 gi|237735331|ref|ZP_04565812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mollicutes bacterium D7]
 gi|167704991|gb|EDS19570.1| hypothetical protein CLORAM_00445 [Clostridium ramosum DSM 1402]
 gi|229381076|gb|EEO31167.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. D7]
          Length = 620

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 371/622 (59%), Gaps = 9/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+GGGHAG EAA   A++   T L+T     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDIIVVGGGHAGIEAALAPARMNQKTVLVTSNFDNVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD   +Q ++LN  KGP V+  R QAD+++Y   MQ  +  QENLD+I+G V 
Sbjct: 62  GGQMPKTADKTYLQMKMLNTAKGPGVQSLRAQADKKVYPRYMQEVLKKQENLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +++ +   I    V+LTTGT+L+  I  G  K  +G      S  L   
Sbjct: 122 DLIVEDNCVKGVILDNGQTIEGRMVILTTGTYLKAEILCGDQKHASGPDQQKESKYLSEK 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
                    RLKTGTP R++  ++ + KT  Q   +  + FS+ T++      Q  C +T
Sbjct: 182 LANLGMRIQRLKTGTPPRVEINSVDYSKTSLQPGTDANLAFSYQTNEFIPIEEQTPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +N+  S++YSG +K  GPRYCPSIEDKIV+F ++  HQIFLEPE    D
Sbjct: 242 YTNEKTHQIIRDNLHRSSMYSGIVKGIGPRYCPSIEDKIVKFSDKPQHQIFLEPESAEMD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST+LP ++Q + IRTIPGLE   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSLPHDVQEEMIRTIPGLENCKILKYAYAIEYDAIDPLQLWPSLETKIIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+  K+   + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLIAGINATLKNQGKEPLILKRDEAYIGVMIDDLVTKGTDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ +R DNAD RL   G  +G + ++  + +   + E       L ++  
Sbjct: 422 YRMLTSRAEYRLLIRHDNADERLMKYGHDVGLVSDQIYQAYLDKMSEIFAEIDRLDTIRF 481

Query: 484 TSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T K+  + ++      +  +  +A E +  P+ + + +     +A K S    +R+ I  
Sbjct: 482 TPKHEINDALEHFGSARLTEGISAKELIKRPELTYEKILPYV-EAPKLSEEQRKRVTILI 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +   +A +    E++ IP D DY  +  L+ E K+KLS ++P  + QAS+I G
Sbjct: 541 KYKGYIDKARRQADKQVKMEEKKIPADIDYEDISNLALEAKQKLSKIRPLTIGQASRISG 600

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           + PA +++LLIY+K+   K NE
Sbjct: 601 INPADISVLLIYLKQ---KYNE 619


>gi|297618521|ref|YP_003703680.1| glucose inhibited division protein A [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297146358|gb|ADI03115.1| glucose inhibited division protein A [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 643

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/622 (42%), Positives = 386/622 (62%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEAA  AA++G  T L+T     I  M CNP++GG  KG LVREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAALAAARMGCKTLLVTISIDGIALMPCNPSVGGPAKGQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  D A +Q R+LN  KGPAVR  R QAD++ Y+  M + +L++ NLD++Q EV
Sbjct: 67  LGGEMGKNIDKARLQIRMLNTAKGPAVRALRAQADKKRYQKEMTKTLLAESNLDILQAEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  IV +  +  +   +V+TTGT+L+G I +G +    G     P+  L  
Sbjct: 127 VKILAGAGRVEGIVTRTGAKYQTKALVVTTGTYLKGRIIVGDVTYDGGPNPFPPATKLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTP R+  K+I + KTE+Q  D  ++ FS+M+ ++   Q+ C +T 
Sbjct: 187 SLRELGLVLGRFKTGTPPRVSRKSIDFSKTEEQPGDPGVLNFSYMSPRVEKPQVSCWLTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           +  ETHRI+ EN+  S +++G I+  GPRYCPS EDK+VRF  +  HQIF+EPEGL+TD 
Sbjct: 247 STPETHRIVKENLHRSPLFTGVIQGVGPRYCPSFEDKVVRFAHKEQHQIFIEPEGLDTDE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G++T+LPE++Q   + +IPGLE+  I+R GYAIEYDY+ P +L  TLET+ + GLF
Sbjct: 307 MYIQGLNTSLPEDVQLAVLHSIPGLERARIVRTGYAIEYDYVLPSQLKLTLETRVVQGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQG++AGIN+A    + +     R+++YIGV+IDDL +KG+ EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGIIAGINAALFVQEKEPFVLKRSEAYIGVLIDDLVTKGIEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G  +G + + R  RF   ++    LR +L    + 
Sbjct: 427 RLMTSRAEYRLLLRQDNADIRLTEKGRDIGLVDDERYTRFRSKVRRMEELREMLLRNKVG 486

Query: 485 SKNLSSTSISFKQDGKT----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +     +  ++         + +E L  P+ SI++L S+     +F   V E ++IE 
Sbjct: 487 VSHEGVAKLLRERGTSELREAVSLWELLRRPEVSIEDLVSLAMVGEEFEPEVREEVEIEC 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+   +  +  E + IP D DY  +  LSNE + KL   +P ++ QAS++ G
Sbjct: 547 KYEGYIRKQVEMVERFERMENKRIPPDIDYDDVVGLSNEGRLKLKTARPESMGQASRMSG 606

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA + +LLI++++      E
Sbjct: 607 ISPADITVLLIHLERERRANEE 628


>gi|170288483|ref|YP_001738721.1| glucose inhibited division protein A [Thermotoga sp. RQ2]
 gi|205831569|sp|B1L9P0|MNMG_THESQ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170175986|gb|ACB09038.1| glucose inhibited division protein A [Thermotoga sp. RQ2]
          Length = 626

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 7/622 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V    TEK  +  +V           V++TTGTFLRG I IG+   PAGRMG+ P+  L
Sbjct: 126 IVERILTEKGRVKGVVDNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPATKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   C 
Sbjct: 186 TESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYPCW 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 246 LTRTNPETHSIIKQYLEFSPLYGTVKLIEGIGPRYCPSIEDKVVKFKDKESHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+  Y NG+ST+LP E Q + IR++ GLE   + RP YAIEYDYI+P++L+PTLE+K 
Sbjct: 306 RDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIVTRPAYAIEYDYIDPRQLYPTLESKL 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL +KG
Sbjct: 366 VENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N     LK
Sbjct: 426 VDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIERLK 485

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +++   +  +   TS+      ++ + Y+ L  P  S   L  + P+       V+E++
Sbjct: 486 KVIVKPSDRVNDLLTSLGTSPLKESVSLYQLLKRPQLSYSALKFLDPNPID-DPEVVEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +   E    +  E   IP D DY ++P LS E ++KL  ++P ++ QA 
Sbjct: 545 EINVKYEGYIQKMFEEVAVFEKYENYEIPHDLDYDAVPNLSTEARDKLKKIRPRSIGQAM 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ P+ ++ L+IY+ +   
Sbjct: 605 RIPGINPSDISNLIIYLDRKKQ 626


>gi|317133703|ref|YP_004093017.1| glucose inhibited division protein A [Ethanoligenens harbinense
           YUAN-3]
 gi|315471682|gb|ADU28286.1| glucose inhibited division protein A [Ethanoligenens harbinense
           YUAN-3]
          Length = 630

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/615 (42%), Positives = 359/615 (58%), Gaps = 3/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y   VIG GHAG EAA   A+LG  T L T     + +M CNP+IGG  KGHLVREIDAL
Sbjct: 8   YGAAVIGAGHAGIEAALACARLGVPTVLFTLNLDAVANMPCNPSIGGTAKGHLVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MGR ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  + +   LD+ Q EV 
Sbjct: 68  GGEMGRAADATFLQSRMLNRGKGPAVHSLRMQCDRRAYHARMKHVLETTPLLDLKQAEVV 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                K  +S++V +  ++     VV+ TGT+LRG +HIG++   +G  G    + L ++
Sbjct: 128 EIRVRKGAVSAVVTRLGAVFTVRAVVIATGTYLRGRVHIGEVSYESGPDGMFGPSLLSDN 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K      R KTGTPAR+   +I +   E Q  D  +IPFSF T+        C I  T
Sbjct: 188 LQKLGLPLLRFKTGTPARVKRASIDFSTLEVQTGDNPVIPFSFETENPGENTAVCHIAYT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N ETH II EN+  S +Y+G I+  GPRYCPSIEDK+VRF ++  HQIF+EP G +T+ +
Sbjct: 248 NAETHHIIRENLHRSPLYAGRIEGVGPRYCPSIEDKVVRFADKERHQIFIEPLGKDTEEL 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  GIS++LPEE+Q QF+RTI G + + ++R  YAIEYD I+P  L P LETK + GL+ 
Sbjct: 308 YLGGISSSLPEEVQMQFLRTIKGFDHIRMMRTAYAIEYDCIDPLALTPMLETKAVQGLYG 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ NGT+GYEEAAAQGL+AGIN+A +      +  SR  +YIG +IDDL +KG  EPYR
Sbjct: 368 AGQFNGTSGYEEAAAQGLMAGINAALQIKGEVPLVLSRAQAYIGTLIDDLVTKGTNEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSRAEYR+ LR DNAD RLTPIG ++G I + R  RF +  ++    R   + ++L  
Sbjct: 428 MMTSRAEYRLVLRQDNADMRLTPIGYRIGLISDERFVRFKEKQRQIQTERQRTEKIILPP 487

Query: 486 K---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               N     +            + L  P      L             V E+++I   Y
Sbjct: 488 SAKLNAYLEQVGTTPLTTGAKLADLLRRPQVHYDALAPFDLGRPVLPEAVREQVEISVKY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  R+    +++   E+R++P D DY ++  L  E   KL  ++P N+ QAS+I G++
Sbjct: 548 EGYIKRENAAIEQMHRLEQRVLPPDIDYRAVSGLRLEAMSKLEAVRPINIAQASRISGVS 607

Query: 603 PAALNLLLIYIKKNT 617
           PA +++LLIY+++  
Sbjct: 608 PADISVLLIYLEQRR 622


>gi|159489444|ref|XP_001702707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydomonas reinhardtii]
 gi|158280729|gb|EDP06486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydomonas reinhardtii]
          Length = 625

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/625 (41%), Positives = 373/625 (59%), Gaps = 6/625 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+G GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  LV E+
Sbjct: 1   EEDYDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDRIGWQPCNPAVGGPAKSQLVHEV 60

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++AD   +Q RVLN  KGPAV   R Q D++ Y   +++ +    NL++ + 
Sbjct: 61  DALGGEIGKMADRCYLQKRVLNRSKGPAVWALRAQTDKQEYSRVIRKVLEETPNLEIREA 120

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V G +    + +  +            VVLTTGTF+ G I +G+  + AGR G++ S  
Sbjct: 121 MVVGLDVGPNDQVRGVRTYFGITFAARAVVLTTGTFMNGTIWVGRQSMSAGRAGEAASVG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +  +  F+T RLKTGTPAR+D +T+ +   E Q  DE    FSF  +  +   Q+ C
Sbjct: 181 LTEALQQLGFETDRLKTGTPARIDSRTVDFGALEPQPGDEDERWFSFDPEVHVPRPQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETHR+I EN++ + IY G + S GPRYCPSIEDKIVRF +++ HQIFLEPEG 
Sbjct: 241 YLTRTTAETHRLIRENLQETPIYGGWVDSKGPRYCPSIEDKIVRFADKDSHQIFLEPEGR 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y  G ST LPE +Q   ++T+PGL +V ++RP YA+EYDY+   +  PTLETKKI
Sbjct: 301 DTPEMYVQGFSTGLPERLQLALLQTLPGLGRVKMLRPAYAVEYDYLPAHQCHPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQ+NGTTGYEEAAAQGLVAG+N+A ++ +   +   R  SY+G ++DDL +K +
Sbjct: 361 RGLFFSGQLNGTTGYEEAAAQGLVAGMNAALRAQERPPVALPRDSSYLGTLVDDLVTKDL 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTP+G  +G + +RR   F          ++ L +
Sbjct: 421 REPYRMLTSRSEYRLLLRSDNADRRLTPLGRDIGLVDDRRWALFTAKQARIEAEKARLGT 480

Query: 481 LVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERL 536
             +   +     + S+S      + T  E L  P      L     D   +      E +
Sbjct: 481 TRVRADSPVAAEAGSLSGHAVPGSPTLEELLRRPHVHYSVLERHGLDGGEQLRFSEREAV 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  YA +  RQ  +   +  +  + +P D DYS++  LS E +EKL  ++P ++ QAS
Sbjct: 541 EIDIKYAGFIARQEKQLASLASKASKPLPADLDYSAIATLSMEAREKLGKIRPRDIGQAS 600

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G++PA ++ LL++++    + +
Sbjct: 601 RIGGVSPADVSALLVHLEVARRRSS 625


>gi|27904514|ref|NP_777640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29611719|sp|P59485|MNMG_BUCBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|27903911|gb|AAO26745.1| glucose inhibited division protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 626

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/619 (46%), Positives = 391/619 (63%), Gaps = 5/619 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +++DVI++GGGHAG EAA   +++   T L+T   +TIG++SCNPAIGG+GK HLV+E+
Sbjct: 4   EQNFDVIIVGGGHAGTEAALACSRMKKKTLLLTQNINTIGALSCNPAIGGIGKSHLVKEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+M +  D +GIQFR+LN KKG AVR  R QADR+LY   +++ +L QENL V+Q 
Sbjct: 64  DALGGIMAKAIDKSGIQFRILNSKKGFAVRSTRAQADRKLYSQTIKKTLLFQENLLVLQA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV         I  ++ Q         VVLTTGTFL G I+IG      GR+ D  S +L
Sbjct: 124 EVDDVIVSNYKIMGVITQTKIKFFSKAVVLTTGTFLGGKIYIGSKCFLGGRINDYSSINL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                      GRLKTGTP R++  TI + K + Q++D  L  FSFM + K   RQI C 
Sbjct: 184 AQRLKDLPIKIGRLKTGTPPRINKHTINFSKLDVQYSDNPLPIFSFMGNQKEHPRQIPCY 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH I+ +N+K S IYSG I   GPRYCPSIEDKIVRF +RN HQIFLEPEGL+
Sbjct: 244 ITATNEKTHEIVRKNLKKSPIYSGLITGIGPRYCPSIEDKIVRFSDRNAHQIFLEPEGLH 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LPE++Q + I +I GLE+  I RPGYA+EYDY +P+ L  TLE+K I 
Sbjct: 304 DIEIYPNGISTSLPEDVQVEMIHSIKGLERAQITRPGYAVEYDYCDPRTLKLTLESKFIE 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           G FLAGQINGTTGYEEAAAQGL+AG+N++  ++       +R  +Y+GV+IDDL +KG  
Sbjct: 364 GFFLAGQINGTTGYEEAAAQGLLAGLNASLYASNKCGWFPNRGQAYLGVLIDDLCTKGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFT+RAE+R+ LR DNAD RLT I   +  I   R  R+ + +       + L++L
Sbjct: 424 EPYRMFTARAEHRLILREDNADLRLTNIAKSMNLIDNSRWTRYVEKLSNIKNETTRLENL 483

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQ 537
            + SK  S T ++     +     TA + L  P+ +   L      +         E+++
Sbjct: 484 KIRSKLYSITELNNFFSIKINTESTAKDLLKRPEINYSTLMLFKKFSPGIKDKEAYEQIE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  Y  RQ+   K     +  ++ K  +Y  +  LSNE+  KL+  KP++L QAS+
Sbjct: 544 IQEKYCGYIKRQIKAIKNQLNNDYIVLSKIKNYKVVKGLSNEVVSKLNFYKPYSLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++LLIY+KK 
Sbjct: 604 ISGITPAAISILLIYLKKK 622


>gi|166714098|ref|ZP_02245305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/623 (45%), Positives = 382/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q        +VVLT GTFL G IH+G  +  AGRMGD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRMGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTAQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR    L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVQGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGSGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   YA Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYAGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLERVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|116630434|ref|YP_819587.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri ATCC 33323]
 gi|116096016|gb|ABJ61168.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus gasseri ATCC 33323]
          Length = 637

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/621 (41%), Positives = 359/621 (57%), Gaps = 5/621 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 12  SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 72  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQA 131

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 132 VADELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG T+ + KT+++  D+    FS+ +        Q+ C
Sbjct: 192 PENLEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKEPRHFSYTSKDSDYLKDQMSC 251

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 252 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 311

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 312 NTKEIYVGDFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 371

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 372 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 431

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K 
Sbjct: 432 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKK 491

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +          V E+++
Sbjct: 492 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVE 551

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++      +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +
Sbjct: 552 IALKYEGYIKKEKTLVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAER 611

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA L +L  YI++  +
Sbjct: 612 ISGVNPADLAILTAYIQQGRI 632


>gi|328952164|ref|YP_004369498.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452488|gb|AEB08317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfobacca acetoxidans DSM 11109]
          Length = 631

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/615 (43%), Positives = 382/615 (62%), Gaps = 3/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYD+IVIG GHAGCE A  AA++G    +      TI  M+CNPA+GGL KGHLV+EID
Sbjct: 6   ESYDLIVIGAGHAGCEGALAAARMGLKVLIFNLNLDTIAHMACNPAVGGLAKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G++G +AD  GIQFR+LN  KGPAVRG R Q D++ YRLAM+  +  +  + + +  
Sbjct: 66  ALGGVIGYLADQTGIQFRLLNTSKGPAVRGTRIQCDKQAYRLAMKAHLEKEPLVHIREAM 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE   I  +        R   V++TTGTFL G+IHIG  + PAGR G+  S  L 
Sbjct: 126 VDRLLTEDGRIVGVQESYGFCYRARAVLITTGTFLNGLIHIGPHQTPAGRAGEFASTKLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +  F  GR+KTGTP RL   +I +   ++    +R   FS+ + ++   QI C +T
Sbjct: 186 ANLQELGFRLGRMKTGTPPRLRASSIDFSGMDRLEGSDRPYHFSWRSTRVDRPQISCFVT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  THR + +NI+HS +YSG IK    RYCPS+EDK++RF E+  HQ+ LEPEGL+T 
Sbjct: 246 HTNGTTHRWVRDNIRHSPLYSGVIKGISARYCPSLEDKVMRFPEKTSHQVTLEPEGLDTV 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+   LP EIQ Q  R++PGLE   ++RP YAIEYDY+ P +L PTLETK I GL
Sbjct: 306 EIYAKGLGNCLPVEIQLQLFRSVPGLEAAEVMRPAYAIEYDYVYPTQLLPTLETKAIRGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGT+GYEEAAAQGL AG+N+A +          R+ +Y+ V++DDL +KG  EP
Sbjct: 366 FLAGQINGTSGYEEAAAQGLWAGVNAACQILGRPPFLLDRSQAYMAVLVDDLVTKGTREP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG  LG +  +  +   +  +      + L    L
Sbjct: 426 YRMFTSRAEYRLLLREDNADLRLTEIGAALGLVDRQALEALQEKKRLLAEEEARLAGKRL 485

Query: 484 TSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 + ++   S  +  +     + L  P+  +  L+++  +     + ++E+++I  
Sbjct: 486 FPLPEVNQALRSRSSSELKEPTPFLKLLKRPELDLPTLYTLAGEVPGAPAAILEQVEIRH 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ+   K+    EK+ +P+DFDY ++P LSNE+++KL  ++P +L QA++I G
Sbjct: 546 KYEGYINRQLEAVKQFVHLEKKRLPQDFDYDAIPGLSNEVRQKLKDIRPLSLGQAARISG 605

Query: 601 MTPAALNLLLIYIKK 615
           +TPAA+ +LL+Y+K+
Sbjct: 606 VTPAAIAILLVYLKR 620


>gi|144899661|emb|CAM76525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 622

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/588 (52%), Positives = 396/588 (67%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L T +  TIG MSCNPAIGGL KG LVREIDALDG+MGR  D  GIQFR+LN  KGPA
Sbjct: 34  TILATQRLETIGEMSCNPAIGGLAKGQLVREIDALDGVMGRAIDKGGIQFRILNRSKGPA 93

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           V+GPR QADR+LYR A+Q  +  Q+NL ++QG V     +   ++  V+ D   I C  V
Sbjct: 94  VQGPRAQADRKLYRQAVQALLAEQDNLTLVQGSVEDLIYKDGRVAGAVLADGRTITCGAV 153

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           V+TTGTFLRG+IH G+   PAGR GD P+N+L  +  +      RLKTGTPARLDG+TI 
Sbjct: 154 VVTTGTFLRGLIHCGEKTWPAGRFGDEPANNLSTALARAGLPLDRLKTGTPARLDGRTIH 213

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           WD+ E Q  D+  +PFS++TD+I+  QI CGIT TN  TH II  N+  + +YSG I+S 
Sbjct: 214 WDQLEMQAGDDPPVPFSYLTDRISTPQIACGITHTNERTHAIIRANLHRAPMYSGQIQSV 273

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK+VRF  ++ HQIFLEPEGL+   VYPNGIST+LP ++Q   IRTIPGLE
Sbjct: 274 GPRYCPSIEDKVVRFAGKDSHQIFLEPEGLDDPTVYPNGISTSLPADVQEAMIRTIPGLE 333

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
            V+IIRPGYAIEYD+++P++L  +LETK ++GLFLAGQINGTTGYEEA AQGL+AG+N+A
Sbjct: 334 DVSIIRPGYAIEYDFVDPRQLKRSLETKVMNGLFLAGQINGTTGYEEAGAQGLLAGLNAA 393

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           R     +     R D+Y+GVM+DDL S G  EPYRMFTSRAEYR+ LR DNAD RLT  G
Sbjct: 394 RFVAGNEAFVLDRADAYMGVMVDDLVSLGTREPYRMFTSRAEYRLILRADNADLRLTAKG 453

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
           M+ GC+G  R   F    Q     R LL SL  +   L    +   QDG  R+A++ L+Y
Sbjct: 454 MEAGCVGSVRADAFTAKAQALEEGRGLLDSLRASPNVLKKAGLEVNQDGVVRSAWDLLAY 513

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           P+  +  L  + P     S  V E+L+I+  Y  Y  RQ  + +  + EE   +P D DY
Sbjct: 514 PNMDLPRLAQVWPALAALSGAVAEQLEIDGKYQGYLSRQEADIRAYRAEENLTLPADMDY 573

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            ++ +LS E+++KL   +P  L  A++I G+TPAA+  LL ++K+   
Sbjct: 574 DAIGSLSAEVRQKLKAAQPETLAVAARISGITPAAITALLAHVKRRNA 621


>gi|289523930|ref|ZP_06440784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502586|gb|EFD23750.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 628

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/618 (41%), Positives = 356/618 (57%), Gaps = 3/618 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R++DVIV+G GHAGCEAA V+A++GA T L+      I  M CNP+IGG  KGH+ REI
Sbjct: 6   ERNFDVIVVGAGHAGCEAALVSARMGARTLLLNLYLDNIALMPCNPSIGGPAKGHITREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G   + ADA+ I  R LN  KGPAVR  R Q D   Y   M+  + +  NL V Q 
Sbjct: 66  DALGGEQAKAADASTIHIRWLNTSKGPAVRALRVQCDLSDYHKYMRNTLETTINLYVHQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     EK  +  +            V++TTG +  G + IG    P+G +G   S  L
Sbjct: 126 LVTDLWVEKGRVRGVKTWLGEEYYSPCVIITTGPYTNGRVFIGSHSFPSGPLGQMASLEL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            NS  +  F TGRL+T T  RL   TI +    KQ + +  + FS            C +
Sbjct: 186 SNSLKRIGFITGRLRTDTTPRLHADTINFTSLTKQDSADEPLCFSHWGIPRIYSGYSCYL 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TR+  +TH II  ++  S +  G+I S GPRYCPSIEDK++RF E+  H IFLEP   ++
Sbjct: 246 TRSTAKTHEIIKSSLTRSPMAKGEINSPGPRYCPSIEDKVMRFPEKESHPIFLEPTCRHS 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y    ST+LP ++Q + +R++PG E+ +I+RPGYAIEYDY  P +L+P LETK + G
Sbjct: 306 KEIYMQNFSTSLPYDVQVEMVRSVPGCERAHILRPGYAIEYDYFPPTQLYPWLETKLVEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAAAQGL+AGIN+  K  K D I   R ++YIGV+IDDL +KG  E
Sbjct: 366 LFFAGQINGTSGYEEAAAQGLMAGINAVLKLRKEDPIVLGRDEAYIGVLIDDLVTKGTEE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR EYR+ +R DNAD RL PIG +LG I + +     K  +  +     LK   
Sbjct: 426 PYRMLTSRCEYRLLMRHDNADKRLAPIGRRLGLIDDEKWSLLLKKWKSMDEEIDRLKGTK 485

Query: 483 LTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +      N   +S++  +  +T +AY+ L  P      L+ I P     +  +  R++IE
Sbjct: 486 IYPSYGVNTLLSSLNQPKLEETVSAYDLLKRPGIDYDILYKIAPLEESLNEEIKSRIEIE 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y+ Y  RQ   A +++  E+  IP D +Y  +  LS+E +EKL  + P  L QA +I 
Sbjct: 546 VKYSGYIERQTSLASKLQRIEQLRIPLDLNYDEIKGLSSEGREKLKKILPGTLGQAGRIS 605

Query: 600 GMTPAALNLLLIYIKKNT 617
           G+TP+ L +L +Y++  +
Sbjct: 606 GVTPSDLQILWMYLEMRS 623


>gi|298528148|ref|ZP_07015552.1| glucose inhibited division protein A [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511800|gb|EFI35702.1| glucose inhibited division protein A [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 631

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/620 (44%), Positives = 376/620 (60%), Gaps = 4/620 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+I++G GHAGCEAA  A+KLG +T ++T+    IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 9   FDLIIVGAGHAGCEAAHAASKLGLATLVLTNNIDRIGHLSCNPAIGGLAKGHMVKEIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD +GIQFR LN +KGPAV+  R Q DR  Y  + Q  + S ++L +++    
Sbjct: 69  GGIMGLWADESGIQFRRLNTRKGPAVQATRAQMDRSRYLFSAQSTLFSLDHLYIMEAFAE 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   I  +            V+LTTGTFL+G IH+G      GR+GD  S  L +S
Sbjct: 129 DLLVTSGRIRGVRTAFGEDFYAPAVLLTTGTFLQGQIHVGLRSSSGGRLGDPASAGLSHS 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K   D GRLKTGT  RL  ++I +   ++Q  D+    FSF     T RQI C IT T
Sbjct: 189 LRKLGLDLGRLKTGTVPRLLKESIDFSVMQEQHGDDPPPRFSFRGAPRTLRQIPCHITYT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +  TH  I   +  S +Y G I   G RYCPSIEDK+ RF E+  HQIF+EPEGL++  V
Sbjct: 249 SSSTHECINAGLDRSPMYQGLIHGTGARYCPSIEDKVARFPEKERHQIFVEPEGLDSHEV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP ++Q + ++TIPGLEK  I+RPGYAIEYDYI+P +L P LET+ + GL+ 
Sbjct: 309 YPNGISTSLPLDVQKKMLQTIPGLEKAIIVRPGYAIEYDYIHPTQLTPHLETRAVQGLYS 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N   +S+  D     R  +Y+ V++DDL ++G  EPYR
Sbjct: 369 AGQINGTSGYEEAAAQGLWAALNIYARSHGTD-FILKRDQAYMAVLVDDLITRGTSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLTP+G +LG + +   K F    Q+   L+  L+S+V+  
Sbjct: 428 MFTSRAEYRLLLREDNADERLTPLGRELGLVDDAYWKIFTARQQQMQSLKEALRSMVIRP 487

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +      I      ++ +  + L  P  SI+ L  +      +   ++ER+Q +  +
Sbjct: 488 DQSTVKILEQIGAHPPKRSASLADILKQPSISIRELKPLWSGLDDYEDAILERVQTDIKF 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ   A+ I+  E   +P+D DY+ +  LS E  EKLS ++P  L QA +I G+T
Sbjct: 548 EGYISRQREMAERIRHLEDTGLPRDLDYTRVSGLSREAVEKLSAIRPETLGQAGRISGIT 607

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA L+ L IY+K       +
Sbjct: 608 PATLSALQIYLKMGKKDPQQ 627


>gi|94263267|ref|ZP_01287083.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
 gi|93456350|gb|EAT06474.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
          Length = 629

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/629 (46%), Positives = 386/629 (61%), Gaps = 13/629 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN+ YD+IVIG GHAGCEAA  AA+LG  TA++     TIG++SCNPA+GGL KGHLV+
Sbjct: 1   MINQRYDIIVIGAGHAGCEAALAAARLGCDTAVLVMNADTIGALSCNPAVGGLAKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M R  DA GIQFR LN  KGPAVR  R QADR+ Y   +++ +  Q+NL + 
Sbjct: 61  EIDALGGEMARNIDATGIQFRRLNTSKGPAVRSSRAQADRQRYPARLKQVLEQQKNLTIR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  ++      +R   V++TTGTFL G+IHIG    PAGRMGD PS 
Sbjct: 121 QSTVDRLLVEDKRVVGVLTSLGEELRAGAVIITTGTFLNGLIHIGLKTFPAGRMGDMPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
           +L     +  F  GR+KTGT  RL G +I +   E QF D+    FSF     + T  Q+
Sbjct: 181 ALPTHLKELGFAMGRMKTGTTPRLAGNSIDYSGLEVQFGDDPPPLFSFANAGGRPTLPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T   TH II      S + SG I+  G RYCPSIEDK+ RF +++ HQIFLEPE
Sbjct: 241 PCHITYTGAATHEIIRAGCDRSPLLSGVIEGIGARYCPSIEDKVSRFADKDRHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  VYPNGIST+LP ++Q   +RTIPGLE+  ++RPGYAIEYDY++P EL P+LE+K
Sbjct: 301 GLDTTEVYPNGISTSLPMDVQLAMLRTIPGLEQARLVRPGYAIEYDYVDPLELQPSLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +++ LFLAGQINGT+GYEEAAAQGL+AGIN+AR+      +   R+ +YIGV+IDDL +K
Sbjct: 361 RLANLFLAGQINGTSGYEEAAAQGLLAGINAARQLGGQPPLVLDRSQAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RL PIG ++G + E+R + F    Q    L   L
Sbjct: 421 GTKEPYRLFTSRAEYRLLLREDNADARLCPIGWQIGLLDEQRYRAFEHKQQTMAELHQRL 480

Query: 479 KSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPD--------FSIQNLFSICPDARK 527
           +   +      N     ++     ++ +  E L  P+         +        P    
Sbjct: 481 RQTTIRPGPATNRRLAELASSPLRQSCSLAELLKRPELDLAAVLALAQAAAEPATPAPEA 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +   +Q+E  Y  Y  RQ  + +  +  E   +P D  Y  LP LS+E+ EKL  +
Sbjct: 541 ALPELGHEVQLEIKYEGYITRQREQVERFRKLESIRLPTDLVYRGLPGLSSEVVEKLEKV 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P  L QA++I G+TPAAL +L +++K+ 
Sbjct: 601 RPRTLGQAARISGITPAALGVLQVHLKRE 629


>gi|56751692|ref|YP_172393.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Synechococcus elongatus PCC 6301]
 gi|81170584|sp|Q5N1E7|MNMG_SYNP6 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56686651|dbj|BAD79873.1| glucose inhibited division protein [Synechococcus elongatus PCC
           6301]
          Length = 635

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/626 (40%), Positives = 372/626 (59%), Gaps = 5/626 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIVIG GHAGCEAA  AA+LG  T L+T     IG   CNPA+GG  K  L  E+
Sbjct: 4   TEEFDVIVIGAGHAGCEAALAAARLGCQTLLLTLNLDRIGWQPCNPAVGGPAKSQLAHEV 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   +++ +  Q NL + +G
Sbjct: 64  DALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVIKQVLEQQPNLRLREG 123

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V        + +  +     S  R   V+LTTGTFL G I +G   +PAGR G+  +  
Sbjct: 124 MVTDLLIGPNDEVQGVTTYFGSSFRAKAVILTTGTFLGGCIWVGNKSMPAGRAGEFAAVG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +  +  F+T RLKTGTPAR+D +++ + + E Q  D  +  FSF  +  +   Q+ C
Sbjct: 184 LTETLQRLGFETDRLKTGTPARVDKRSVDYSRLEPQPGDPEVRWFSFDPEAWVEREQLPC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT  ETH++I +N+  + +Y G I + GPRYCPSIEDKIVRF ++  HQIF+EPEG 
Sbjct: 244 YLTRTTAETHKLIRDNLYLTPVYGGYIDAKGPRYCPSIEDKIVRFADKESHQIFIEPEGR 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE++Q   ++T+PGLE   ++RP YA+EYDY+   +  PTL T+++
Sbjct: 304 DIPELYIQGFSTGLPEDLQLALLQTLPGLEDCVMLRPAYAVEYDYLPATQCLPTLMTRRV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQG+VAGIN+AR     D I F R  SYIG +IDDL +K +
Sbjct: 364 EGLFSAGQLNGTTGYEEAAAQGIVAGINAARFVQGQDAIVFPREGSYIGTLIDDLCTKDL 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSR+EYR+ LR DNAD R+TP+G ++G I +RR   F +        ++ L  
Sbjct: 424 REPYRVLTSRSEYRLLLRADNADQRMTPLGREIGLIDDRRWALFEQKQARIAAEQTRLTQ 483

Query: 481 LVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +    +I+ +       + T  + L  P+F   +L +        +    E  +
Sbjct: 484 QRVKEHDPVGQAIAQQTQAPIKGSATLADLLRRPNFHYIDLEAHGLGDPSLAIAEKEGAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   YA Y  RQ  +  ++  + +R +P D DYS++ ++  E +EKL+  +P  L QAS+
Sbjct: 544 IAIKYAGYLQRQQAQVDQVVRQSQRPLPVDLDYSAITSMRLEAREKLARFRPLTLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNEI 623
           I G+ PA +N LLI+++    + +++
Sbjct: 604 IGGVNPADINALLIWLEVQERQRSQV 629


>gi|258646489|ref|ZP_05733958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister invisus DSM 15470]
 gi|260403897|gb|EEW97444.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister invisus DSM 15470]
          Length = 626

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/619 (41%), Positives = 367/619 (59%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARMGCRTLLTTISLDNVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA  +Q R+LN  KGPAV   R Q+D+  Y   M+  + + +NLD+ Q +V
Sbjct: 66  LGGEMGIAADATAVQMRMLNRGKGPAVYALRAQSDKGAYHRYMKNVVENTDNLDLKQVQV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      I  + +   R   V+L TGT+L  +I IG      G  G   S  L  
Sbjct: 126 MDIIVEDGKCVGITTELDEEYRAKAVILCTGTYLDSMIIIGDTMYSGGPNGMRSSVGLSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   +  R KTGTP+R+D +++  +  E +  D     FSFM+++    +  C +T 
Sbjct: 186 NLKKHGLEILRFKTGTPSRVDRRSLHLEGMELEEGDPENHAFSFMSERKDRNKRNCWLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II ENI  +  Y+G I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNEKTHDIIRENIMRAPKYAGKIHGIGARYCPSIEDKVVRFADKDRHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F+RTIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLRTIPGFEDVKMMRPAYAIEYDLLDPLQLYPTLEVIKLPGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGLVAGIN+A K    D    +R ++YIG ++DDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLVAGINAALKIQGKDPFILARHEAYIGSLVDDLVTKGADEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +GE R  RF +  ++Y      +++   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGHSIGLVGEERYARFLERKKKYEEAMDYIRTQRFT 485

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K     +  S+          A + L  P+ + + +         F    +E ++I   
Sbjct: 486 PKEEINRALESMGTAPLTTGTGADQILKRPEMTYRKMMETL-GCPSFDEEAVEEMEITVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ    ++    E   +P D DY SL  +S E ++K+  ++P +L QA++I G+
Sbjct: 545 YEGYIARQEAAVRKAARMENEKLPLDMDYLSLDGISTEARQKMDKIRPLSLGQAARIPGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA +++L++Y+K+   K 
Sbjct: 605 SPADISVLMVYVKQRKGKK 623


>gi|298695967|gb|ADI99189.1| glucose inhibited division protein A [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 594

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/593 (45%), Positives = 374/593 (63%), Gaps = 7/593 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDVVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSSTSISFKQDGKTRTAYEF 507
           LG I E R  RF +  Q+ +     L  + +         +     S  +DG    A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGI--LAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  I  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++ 
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQR 591


>gi|317485843|ref|ZP_07944707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bilophila wadsworthia 3_1_6]
 gi|316922949|gb|EFV44171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bilophila wadsworthia 3_1_6]
          Length = 619

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 360/616 (58%), Gaps = 3/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IV+G GHAGCEAA   A+ G    LIT     IG +SCNPAIGGL KGH+VREIDAL
Sbjct: 2   FDCIVVGAGHAGCEAAMTLARFGQRVLLITGNVDRIGHLSCNPAIGGLAKGHMVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR LN  KGPAVR  R Q DR+ Y  A +  + ++ ++ + Q  V 
Sbjct: 62  GGMMGLWADRAGIQFRTLNASKGPAVRATRAQIDRDSYMEAAKAALFAEPDITIWQDTVD 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                    + +  +         V+LTTGTFL G+IH+G    P GR+GD+ +  L +S
Sbjct: 122 EVLELGGRAAGVRTELGQTFEAPHVILTTGTFLCGLIHVGLTHFPGGRLGDAAAMKLSDS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K     GRLKTGT  RL   +I + + E+Q  D+    FSF   K    Q+ C +T T
Sbjct: 182 LRKHGLTLGRLKTGTTPRLLRSSIDFSQMEEQPGDDPAPGFSFYGPKPGQPQVPCYVTWT 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I   +  S +++G I+  G RYCPS+EDK+ RF ER  H +F+EPEGLN    
Sbjct: 242 NERTHDAIRSGMDRSPLFTGVIEGTGARYCPSVEDKVARFPERERHHVFIEPEGLNGQEC 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NGIST+LP ++Q   I +IPGLE   ++RPGYAIEYDY++P +L PTLE K + GL+L
Sbjct: 302 YANGISTSLPLDVQLAMIASIPGLEHAKMVRPGYAIEYDYVDPVQLEPTLEAKVLPGLWL 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQG+ A IN   +          R  +Y+ V++DDL ++G  EPYR
Sbjct: 362 AGQINGTSGYEEAAAQGMWAAINVGCRLTGRQPFLPGRDVAYMSVLVDDLVTRGTQEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR  NAD RLTP+G +LG +G+ +   F +       L  +L+ + ++ 
Sbjct: 422 MFTSRAEYRLLLREANADARLTPLGRELGLVGDEQWSAFRRKQDALGRLLDMLREVRVSP 481

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +S     +      K+ T  E L  P  +++ L  + P    F   V+   +    Y
Sbjct: 482 DAATSDAFRELGEPVPNKSLTLEEVLRRPSMTLERLERLHPGVAAFPEEVLLEAETSVKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ    K     E+  +P D DY S+  LS E+ EKL  ++P  L QA +I G+T
Sbjct: 542 AGYLVRQDELVKRSARLEEVRLPADLDYPSVSGLSAEIVEKLCAVRPRTLGQAGRISGVT 601

Query: 603 PAALNLLLIYIKKNTV 618
           PAAL  L I++KK ++
Sbjct: 602 PAALTCLEIHLKKRSL 617


>gi|33519484|ref|NP_878316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Blochmannia floridanus]
 gi|81170525|sp|Q7VQW3|MNMG_BLOFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33517147|emb|CAD83529.1| glucose inhibited division protein [Candidatus Blochmannia
           floridanus]
          Length = 634

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/625 (44%), Positives = 386/625 (61%), Gaps = 8/625 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVI++GGGHAG E+A  ++++   T LITH   TIG MSCNP+IGG+GKGHLV+E+DA
Sbjct: 6   NFDVIIVGGGHAGTESALASSRMKCKTLLITHNVDTIGQMSCNPSIGGIGKGHLVKEVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M +  D +GIQFR+LN +KG AV+  R QAD+ LYR A++  +  Q++L ++Q  V
Sbjct: 66  MGGIMAKAIDQSGIQFRILNTRKGAAVKSTRAQADKILYRQAIRHALEIQDSLFILQASV 125

Query: 125 AGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS-L 182
                ++N +  +V+      I   +VVLTTGTFL G IHIG      GR GD  S+S L
Sbjct: 126 EDLIIKQNKVIGVVIPKIAIEIYAKSVVLTTGTFLNGKIHIGMNNFKGGRSGDLESSSSL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
                   F   RLKTGT  R+  K + +D    Q +D  L  FSF    +   +QI C 
Sbjct: 186 SQKLRDLSFRINRLKTGTSPRIHAKGVNFDCMSVQNSDSPLPVFSFTGSFEQHPKQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T TN +TH II  N+  S +YSG I    PRYCPSIEDK+VRF +R+ HQ+FLEPEGL 
Sbjct: 246 STYTNKKTHDIIRLNLNQSPVYSGLINGISPRYCPSIEDKVVRFSDRDAHQVFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LP  IQ + I +I GLE  +IIRPGYAIEYD+ +P++L  TLE+K IS
Sbjct: 306 TSEIYVNGVSTSLPFNIQTEIIHSIFGLENAHIIRPGYAIEYDFFDPRDLKLTLESKFIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFL+GQINGTTGYEEAAAQG++AGIN+AR           R  +Y+GV++DDL + G  
Sbjct: 366 GLFLSGQINGTTGYEEAAAQGILAGINAARYVQNKPGWYPRRDQAYLGVLVDDLCTYGTK 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+EYR+SLR DNAD RLT +  + G I + R + F    +     R  L++ 
Sbjct: 426 EPYRMFTSRSEYRLSLREDNADLRLTTVAREFGLIDDNRWRIFCLKQENIEKERQRLRNT 485

Query: 482 VLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQ 537
            +   +     ++           +  + L  P+ +   L  +      K    V E+++
Sbjct: 486 YIFPYSEDIVQLNRFLNSPIKNKVSGEDLLKRPEMNYVKLMQLNTFQSVKLDYQVFEQVE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y+ Y  RQ  E K+  + E  L+P D +Y  +  LS E+ +K +  +P+++ QAS+
Sbjct: 546 IQIKYSGYLLRQQEEIKKYLYYENTLLPIDINYHDIAGLSKEVIDKFNDCRPYSIGQASR 605

Query: 598 IEGMTPAALNLLLIYIKKNT-VKLN 621
           I G+TPAA++ +LI++KK   +K N
Sbjct: 606 IPGVTPAAISNVLIWLKKQGLLKKN 630


>gi|188574491|ref|YP_001911420.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518943|gb|ACD56888.1| glucose-inhibited division protein A [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 634

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/623 (44%), Positives = 382/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q        +VVLT GTFL G IH+G  +  AGR+GD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRLGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR  + L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVHGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYTGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLEHVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|296274537|ref|YP_003657168.1| glucose inhibited division protein A [Arcobacter nitrofigilis DSM
           7299]
 gi|296098711|gb|ADG94661.1| glucose inhibited division protein A [Arcobacter nitrofigilis DSM
           7299]
          Length = 630

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/617 (44%), Positives = 379/617 (61%), Gaps = 8/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EA+  +A++G  T L+T     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   KYDVIVVGGGHAGIEASLASARMGKKTLLVTMLVEQIGAASCNPAIGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D+AGIQFR+LN  KG AV+G R Q D + YR  M++   + ENL++ Q EV
Sbjct: 62  LGGEMGLCTDSAGIQFRILNASKGAAVQGSRAQIDMDRYRTYMRKVCHNTENLEIYQDEV 121

Query: 125 AGFNTEKN---IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           +   T+      +  +  +         V+LTTGTF++G+IHIG     AGR  + PS++
Sbjct: 122 SSLLTKDENGLEVCGVKTKLGEEFESKKVILTTGTFMKGLIHIGTSTYDAGRAWELPSST 181

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIE 239
           L     +F  + GRLKTGTPAR+D K+I + K E+   DE+  PFSF TDK     +Q  
Sbjct: 182 LSTQLKEFGLNVGRLKTGTPARIDAKSINFSKMEEHGGDEKPTPFSFRTDKSTFNPKQHP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL TH  I  N   + +++G IK  GPRYCPSIEDK+ RF ER+ HQ+FLEP+ 
Sbjct: 242 CYITYTNLGTHGKISSNFHRAPLFTGQIKGSGPRYCPSIEDKVNRFSERDRHQLFLEPQT 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                 Y NG+ST++P ++Q + I +I GLE   I+R GYAIEYDY++P EL  TLETKK
Sbjct: 302 AMATEYYINGLSTSMPIDVQKEMIHSIAGLENAKIVRYGYAIEYDYVDPTELKHTLETKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQIN TTGYEEAA+QGL+AGIN++   +  + +   R ++YIGV+IDDL +KG
Sbjct: 362 VKNLYHAGQINATTGYEEAASQGLMAGINASLAIDNKEPLILRRDEAYIGVLIDDLVTKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR + AD RL+  G K+G I +   ++     +        +K
Sbjct: 422 TAEPYRMFTSRAEYRLLLREEGADIRLSEYGHKIGLINDETIQKVQYKEKCIKEAIDFMK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLS---YPDFSIQNLFSICPDARKFSSLVIERL 536
               TSK  +   +      K +     L        + +N   +CP  ++  + + E++
Sbjct: 482 EEWFTSKKENLELLEKLGQDKIKDRVLLLDIVGRNGVTTENFDELCPQFKELDNYIKEQI 541

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            IE+ Y  Y  +Q  + +++K   +  IP+ FDY  +P LSNE  EKL   +P  L  A 
Sbjct: 542 IIEAKYYRYVEKQQKQIEKMKKMIQLKIPESFDYKEIPGLSNEAIEKLEKFRPPTLFNAG 601

Query: 597 KIEGMTPAALNLLLIYI 613
           +I G+TPAA++++ +YI
Sbjct: 602 EISGITPAAVDVIHLYI 618


>gi|269204348|ref|YP_003283617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ED98]
 gi|262076638|gb|ACY12611.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus ED98]
          Length = 594

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/593 (45%), Positives = 374/593 (63%), Gaps = 7/593 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSSTSISFKQDGKTRTAYEF 507
           LG I E R  RF +  Q+ +     L  + +         +     S  +DG    A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGI--LAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  I  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++ 
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQR 591


>gi|124004897|ref|ZP_01689740.1| glucose-inhibited division protein A [Microscilla marina ATCC
           23134]
 gi|123989575|gb|EAY29121.1| glucose-inhibited division protein A [Microscilla marina ATCC
           23134]
          Length = 620

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/621 (42%), Positives = 378/621 (60%), Gaps = 7/621 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGHAGCEAA+ AA LG+   LIT   + I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFPK-YDVIVVGGGHAGCEAASAAANLGSKVLLITMDMNKIAQMSCNPAMGGVAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+ G V D   IQFR+LN  KG A+  PR Q+DR  +    +  +    N+D  
Sbjct: 60  EIDALGGMSGIVTDKTMIQFRMLNRSKGAAMWSPRCQSDRMRFAEEWRITLEQNLNVDFW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   + N +S +V      +  ++V+LT+GTF+ G+IHIG+ +   GR G+  S 
Sbjct: 120 QDMVVGMVVKDNQVSGVVTSMGLEVLSNSVILTSGTFMNGLIHIGEKQFGGGRAGERASK 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    ++  F+ GR+KTGTP R+D ++I ++  E+Q  D     FS+        Q  C
Sbjct: 180 GITEQLVQLGFEAGRMKTGTPPRVDARSINYEVMEEQAGDVDPGKFSYTDTPKLKEQRSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN + H I+ +    S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG 
Sbjct: 240 HITYTNKKVHAILEKGFDKSPMFAGRIKGIGPRYCPSIEDKINRFAERERHQIFVEPEGW 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG ST+LPEE+Q++ + +I G E   + RPGYAIEYDY  P +L  TLETK +
Sbjct: 300 NTVEVYVNGFSTSLPEEVQYEALHSIVGFENAKMFRPGYAIEYDYFPPTQLKMTLETKLV 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAA QG++AGIN+  K  + +    SR+++YIGV+IDDL +KG 
Sbjct: 360 ENLFFAGQINGTTGYEEAACQGMMAGINAHLKVKEENPFILSRSEAYIGVLIDDLINKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLT    KLG   E+R +R  +   +   +   L  
Sbjct: 420 DEPYRMFTSRAEYRILLRQDNADLRLTEKSYKLGLASEKRMQRVREKRGQIKQMSEELAK 479

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSI----CPDARKFSSLVIE 534
           +      +++    +      +       +  P+ S + L S+         +F   V+E
Sbjct: 480 IKYKPNEINNHLETLGTASIKEKSALINLVKRPEVSFEKLRSLEGSVAEFLNQFDHEVVE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I + YA+Y  ++   A+++   E   IP  FDY +L A+S+E +EKL  ++P  + Q
Sbjct: 540 QVEILTKYASYIDKEEKMAQKLYELEGFRIPVSFDYDNLKAISSEGREKLKTIRPDTIGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++P+ +++L++Y+ +
Sbjct: 600 ASRISGVSPSDISILMVYLGR 620


>gi|148269797|ref|YP_001244257.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga petrophila RKU-1]
 gi|281412319|ref|YP_003346398.1| glucose inhibited division protein A [Thermotoga naphthophila
           RKU-10]
 gi|205831566|sp|A5IKF8|MNMG_THEP1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147735341|gb|ABQ46681.1| glucose inhibited division protein A [Thermotoga petrophila RKU-1]
 gi|281373422|gb|ADA66984.1| glucose inhibited division protein A [Thermotoga naphthophila
           RKU-10]
          Length = 626

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/622 (41%), Positives = 373/622 (59%), Gaps = 7/622 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++     T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLAVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+ LY   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINIRMLNVSKGPAVRALRAQIDKILYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V    TEK  +  +V           V++TTGTFLRG I IG+   PAGRMG+ P+  L
Sbjct: 126 IVEKILTEKGKVKGVVDNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPATKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   C 
Sbjct: 186 TESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYPCW 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 246 LTRTNPETHSIIRQYLEFSPLYGTVKLIEGVGPRYCPSIEDKVVKFKDKESHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+  Y NG+ST+LP E Q + IR++ GLE   I RP YAIEYDYI+P++L+PTLE+K 
Sbjct: 306 RDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIITRPAYAIEYDYIDPRQLYPTLESKL 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL ++G
Sbjct: 366 VENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGESPLILKRSEAYIGVLIDDLVTRG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N     LK
Sbjct: 426 VDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIERLK 485

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +   +  +   TS+      ++ + Y  L  P  S   L  + P+       V+E++
Sbjct: 486 KVAVKPSDRINDLLTSLGTSPLKESVSLYHLLKRPQLSYSTLKFLDPNPMD-DPEVVEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +   E    +  E   +P D DY ++P LS E K+KL  ++P ++ QA 
Sbjct: 545 EINVKYEGYIQKMFEEVAVFEKYENYEVPYDLDYDAVPNLSTEAKDKLKKIRPRSIGQAM 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ P+ ++ L+IY+ K   
Sbjct: 605 RIPGINPSDISNLIIYLDKKKQ 626


>gi|91206167|ref|YP_538522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii RML369-C]
 gi|157826531|ref|YP_001495595.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii OSU 85-389]
 gi|122425159|sp|Q1RGT1|MNMG_RICBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166199727|sp|A8GUR1|MNMG_RICB8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91069711|gb|ABE05433.1| Glucose-inhibited division protein A [Rickettsia bellii RML369-C]
 gi|157801835|gb|ABV78558.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia bellii OSU 85-389]
          Length = 621

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 428/611 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG EAAA +A+LG ST LIT K+  +G MSCNPAIGG+ KG LV+EID
Sbjct: 2   QKYDVIVIGGGHAGVEAAAASARLGVSTLLITPKSENLGEMSCNPAIGGIAKGTLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NL+++  +
Sbjct: 62  ALDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLEILYAK 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     + + I ++++ + S I C  ++LTTGTFL G+IHIG  KIPAGR+ + PS  L 
Sbjct: 122 VEDIEIKSSEIKAVILNNGSKIPCQKIILTTGTFLSGLIHIGSKKIPAGRVDEEPSYGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N+  +  F   RLKTGTP R+DG+TI + K E Q  D+   PFS +TD +   QI C +T
Sbjct: 182 NTLRRIGFKLSRLKTGTPPRIDGRTIDYSKVESQPGDKVPRPFSELTDNVNVPQINCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH +I  N+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEG++  
Sbjct: 242 KTTTETHNVIRANLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGVDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LPEE+QHQ I+TIPGLE   I+RPGYAIEYDYI+P+E+  TLETKKI+GL
Sbjct: 302 TIYPNGISTSLPEEVQHQLIKTIPGLENAIILRPGYAIEYDYIDPREISSTLETKKITGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAA QG+VAGIN+A           +R +SYIGVMIDDLTS G LEP
Sbjct: 362 YFAGQINGTTGYEEAAGQGIVAGINAALAVKNQPPFILTRANSYIGVMIDDLTSFGTLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSR+EYR+S+R DNAD RLT +G+ +G I E+R++ F    +     +SLL +L L
Sbjct: 422 YRMFTSRSEYRLSIRADNADLRLTEMGISIGVISEKRKEIFTIKCKNIESTKSLLNTLCL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T+  L+   I   QDG  +T  +    P+F ++    I P  +   + +++ L IE+ YA
Sbjct: 482 TTSKLAKMGIQVAQDGTYKTVLDLFKIPNFDVEQAIKIFPVLKNVDNNILQLLYIEAKYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  ++ A +I G+TP
Sbjct: 542 SYLVRQYADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSYNKPITIVAARRIPGVTP 601

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 602 AAITAIIIYLK 612


>gi|86359700|ref|YP_471592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli CFN 42]
 gi|123510386|sp|Q2K2S1|MNMG_RHIEC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86283802|gb|ABC92865.1| glucose inhibited division protein A [Rhizobium etli CFN 42]
          Length = 632

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/618 (60%), Positives = 463/618 (74%), Gaps = 1/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  Y+VIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTNSGYNVIVIGGGHAGTEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +   LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNRKKGAAVRGPRTQADRKLYRLAMLAAIEATPGLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +     ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLDVLDGRVAGVIMKDGRRLQAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT RQ+EC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEELVPFSFMTDSITTRQVEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NIKHSA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIKHSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP EIQ  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEIQAAFIKTIPGLESARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A  S+  +   FSRT SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALLSSDSEPFHFSRTSSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+ M LGC+G  R +RF  Y  E +  R+ L +
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADMRLTPLAMALGCVGAERAERFTAYQAEIDAGRAQLMA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIE 539
           L +T        ++   DG+ R+AY+FLSYP +    L  + P +  +    V E L+IE
Sbjct: 481 LTVTPNEARRAGLNINLDGQRRSAYDFLSYPTYDFAALRKVWPEELGRLRPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KLS  +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIADQQRDEERRIPADFNYDALSGLSNELKAKLSAARPFNVAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKKNT 617
           GMTPAA+ LLL+++++  
Sbjct: 601 GMTPAAVALLLVHLRRQQ 618


>gi|15643033|ref|NP_228076.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga maritima MSB8]
 gi|7674053|sp|Q9WYA1|MNMG_THEMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4980759|gb|AAD35351.1|AE001708_19 glucose-inhibited division protein A [Thermotoga maritima MSB8]
          Length = 629

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 374/622 (60%), Gaps = 7/622 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDVIV+G GHAG EAA  AA++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 9   DRVYDVIVVGAGHAGIEAALAAARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 69  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V    TEK  +  +V           V++TTGTFLRG I IG+   PAGRMG+ P+  L
Sbjct: 129 IVERILTEKGRVKGVVDNYGIDYLGKAVIVTTGTFLRGKIFIGRSTFPAGRMGEFPATKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF  + ++  +   C 
Sbjct: 189 TESLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFDEPRVLPKDYPCW 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+V+F ++  HQ+F+EPEG
Sbjct: 249 LTRTNPETHSIIKQYLEFSPLYGTVKLIEGIGPRYCPSIEDKVVKFKDKESHQVFVEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+  Y NG+ST+LP E Q + IR++ GLE   + RP YAIEYDYI+P++L+PTLE+K 
Sbjct: 309 RDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIVTRPAYAIEYDYIDPRQLYPTLESKL 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ+NGT+GYEEAA QG++AGIN+A K      +   R+++YIGV+IDDL +KG
Sbjct: 369 VENLYFAGQVNGTSGYEEAAGQGIIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVTKG 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +  N     LK
Sbjct: 429 VDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVLSLERRINEEIERLK 488

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +++   +  +   TS+      +  + Y+ L  P  S   L  + P+       V+E++
Sbjct: 489 KVIVKPSDRVNDLLTSLRTSPLKEPVSFYQLLKRPQLSYSALKFLDPNPID-DPEVVEQV 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +   E    +  E   IP D DY ++P LS E ++KL  ++P ++ QA 
Sbjct: 548 EINVKYEGYIQKMFEEVAVFEKYENYEIPHDLDYDAVPNLSTEARDKLKKIRPRSIGQAM 607

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+ P+ ++ L+IY+ +   
Sbjct: 608 RIPGINPSDISNLIIYLDRKKQ 629


>gi|158426333|ref|YP_001527625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Azorhizobium caulinodans ORS 571]
 gi|172047933|sp|A8I266|MNMG_AZOC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|158333222|dbj|BAF90707.1| glucose-inhibited division protein A subfamily [Azorhizobium
           caulinodans ORS 571]
          Length = 625

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/591 (52%), Positives = 419/591 (70%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+  TIG+MSCNPAIGGLGKGHLVREIDALDGLMGRVAD  GIQFR+LN +KGPAVR
Sbjct: 32  LVTHRADTIGAMSCNPAIGGLGKGHLVREIDALDGLMGRVADQGGIQFRLLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  + +Q NL++++GE       +  I+ + + D     C  VVL
Sbjct: 92  GPRAQADRKLYARAMQVALAAQPNLEIVEGEADDLLVTEGRITGLALTDGRTFGCGAVVL 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFL G+IH+G+++IPAGR+G++P+  L  +  +     GRLKTGTP RLDG+TI W 
Sbjct: 152 TTGTFLNGLIHMGEVQIPAGRIGEAPARGLSGTLARLGLTLGRLKTGTPPRLDGRTIDWA 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T  + N Q+ CGITRT   TH +I  N+  SA+YSG I+S GP
Sbjct: 212 SLEMQPGDDDPEPFSALTTALPNPQVSCGITRTTQATHDVIRANLSRSAMYSGRIESTGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK+VRFG+R+GHQIFLEPEGL+   VYPNGIST+LPE++Q   + TIPGLE+V
Sbjct: 272 RYCPSIEDKVVRFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEDVQLAVLATIPGLERV 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            + RPGYAIEYD+++P+EL PTLE K+  GLFLAGQINGTTGYEEAAAQGL+AG+N+AR+
Sbjct: 332 VMSRPGYAIEYDHVDPRELEPTLEAKRAPGLFLAGQINGTTGYEEAAAQGLLAGLNAARR 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   + +   R + YIGVM+DDL ++GV EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 392 AGGGEGVVIDRAEGYIGVMVDDLVTRGVSEPYRMFTSRAEYRLTLRADNADQRLTQRGLD 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LG +G  R   F + +   +  R   ++L +T    +   ++  +DG+ R+A++ L+YPD
Sbjct: 452 LGLVGTERAAVFGRRMAALDAARERARTLNITPNEAAKHGLALNKDGQRRSAFDLLAYPD 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
            +++ L  I P+       +  +L+I++ YA Y  RQ  +   ++ +E  ++P +  Y  
Sbjct: 512 ITLETLAGIWPEFGALEPAIGAQLEIDAKYAVYLDRQAADIATLRRDEDLVLPDELGYDG 571

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           LP LSNELK KL+ ++P  + QA ++EGMTPAAL LL+ Y ++   K +E+
Sbjct: 572 LPGLSNELKAKLTRVRPRTIGQAGRMEGMTPAALALLVTYARRTGSKKDEV 622


>gi|58579850|ref|YP_198866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84621864|ref|YP_449236.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75437186|sp|Q5H6D9|MNMG_XANOR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123523557|sp|Q2P915|MNMG_XANOM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58424444|gb|AAW73481.1| glucose inhibited division protein A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365804|dbj|BAE66962.1| glucose inhibited division protein A [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 634

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/623 (44%), Positives = 382/623 (61%), Gaps = 10/623 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGAHTLLLTHTIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q  L V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRTAIRCIVQAQPKLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                        +  ++ Q        +VVLT GTFL G IH+G  +  AGR+GD P+ 
Sbjct: 128 DLIIHNGTCEADSVRGVITQTGLRFEAPSVVLTAGTFLAGKIHVGDTQYAAGRLGDPPAT 187

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L     +  F   RLKTGTP R+DG+T+ +    +Q  D+ L   SFM     + RQ+ 
Sbjct: 188 TLAARLRERPFAIDRLKTGTPPRIDGRTLDYGVMGEQPGDDPLPVMSFMGQVSDHPRQVS 247

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT+T  +TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+  HQIF+EPEG
Sbjct: 248 CWITQTTEQTHDIIRNALHRSPLYSGQIEGIGPRYCPSIEDKVVRFAEKTSHQIFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LP ++Q   +R+I G  + +I RPGYAIEYD+ +P+ L  +LETK 
Sbjct: 308 LDVAEIYPNGISTSLPFDVQLALVRSIHGFAQAHITRPGYAIEYDFFDPRGLKASLETKA 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAAAQGL+AG+N+AR  + L      R ++Y+GV++DDL + G
Sbjct: 368 VGGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVHGLPAWSPRRDEAYLGVLVDDLITHG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR DNAD RLT  G ++G + + R  RF+   +      + L 
Sbjct: 428 TTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRETARLS 487

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIER 535
           +L  T  N     ++        +     + +  P+ +   L  +           V E+
Sbjct: 488 ALWATPGNALGREVADALGVTVSRETNVLDLIKRPELNYATLMRVPTLGPGVDDAQVAEQ 547

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I   Y  Y  RQ  +    +  E   IP+ FDY+ +  LS E+++KL  ++P ++ QA
Sbjct: 548 VEISVKYTGYLDRQRDDIARQQRHETTPIPEGFDYAGVRGLSIEVQQKLEHVRPQHIGQA 607

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
            +I GMTPAA++LLL+++++   
Sbjct: 608 QRIPGMTPAAISLLLVHLERARR 630


>gi|187918052|ref|YP_001883615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia hermsii DAH]
 gi|119860900|gb|AAX16695.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Borrelia hermsii DAH]
          Length = 626

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/626 (45%), Positives = 403/626 (64%), Gaps = 10/626 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  +D IVIGGGHAG EA+   A+L   T LIT    TIG +SCNPAIGGL KG++VRE
Sbjct: 5   IDMDFDAIVIGGGHAGIEASLALARLNFKTLLITQNLDTIGKLSCNPAIGGLAKGNMVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  +GPAV+ PR QAD+ +Y++  +  +  Q+NLD+ Q
Sbjct: 65  IDALGGEMGCLIDFSMIQFRILNKSRGPAVQAPRAQADKLVYQVKAKETLERQDNLDLFQ 124

Query: 122 GEVAGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+ F        I  ++ +  +      VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 125 DTVSDFLLNSMRNKIEGVITERGNKFTSRVVVLTTGTFLRGKIFIGEYRACMGRISEPAA 184

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  FD GRLKTGTPAR+  K+I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 185 CGLEKILLELGFDMGRLKTGTPARVHRKSINFAKTEIQFGDSDIIPFSFSNTKIDKAQLS 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II +N+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 245 CYITYTNKKTHEIISDNMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y NG+S++LPE+IQ + I +I GLE   I RPGYA+EYDYINP EL+ +LETK+
Sbjct: 305 LSTEEMYLNGLSSSLPEDIQKRLINSIDGLENAVITRPGYAVEYDYINPIELYASLETKR 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF+AGQ NG++GYEEAAAQG++AGIN+A +    D +   RT SYIGV+IDDL +KG
Sbjct: 365 IKGLFVAGQTNGSSGYEEAAAQGIMAGINAALRLQGKDPMILPRTSSYIGVLIDDLVTKG 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 425 TKEPYRMFTSRAEHRLNLRHDTSDKRLIRWGYEVGLVSEEKYSRYFCKEKQVEEIKELLR 484

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  K  S+  +   +    +  Y  +  P  ++ +L +I P     S +++E+++++
Sbjct: 485 QRRLKEKEASTLQL---KKHINKDFYHIIKDPYVNLSDLLNIDPKLNA-SKVILEQVELD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DF+Y  +  LS E KEK + ++P NL QAS+I 
Sbjct: 541 IKYEGYINRQRDLIRKMNNLELIKLPLDFNY-EIEGLSREAKEKFARIQPANLAQASRIS 599

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+    + +LLI+    +   N++VL
Sbjct: 600 GVRNTDIQVLLIHF---SNPKNKVVL 622


>gi|330837281|ref|YP_004411922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta coccoides DSM 17374]
 gi|329749184|gb|AEC02540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta coccoides DSM 17374]
          Length = 630

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/621 (44%), Positives = 388/621 (62%), Gaps = 20/621 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+ IV+GGGHAG EA+   A++G  T L+T    TIG MSCNPAIGGL KG+LVRE+DA
Sbjct: 2   DYEAIVVGGGHAGIEASLALARMGHRTLLVTQSLDTIGRMSCNPAIGGLAKGNLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + DA  IQFR+LN ++GPAV+ PR QAD+  Y    +  +  Q+ L +    V
Sbjct: 62  LGGQMGLLIDATTIQFRILNRRRGPAVQAPRAQADKFSYSRLAKETLEVQKGLSLFMDTV 121

Query: 125 AGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  +   +  +V +    I   TVV+TTGTF+ G I IG     +GR+G+  +  L
Sbjct: 122 TDLIVSEDGRRVEGVVTERGHRIGARTVVVTTGTFMDGRIFIGDYDASSGRLGEPAAMGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S  +  FD GRLKTGTPAR+   ++ + + E Q  D  + PFSFMT KI   Q++C I
Sbjct: 182 GSSLRRLGFDVGRLKTGTPARVRRSSLDFSRLEVQPGDGAMQPFSFMTGKIHRPQMDCYI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   TH+II +NI  S +Y G I   GPRYCPSIEDK+VRF ER  HQIF+EPEG  T
Sbjct: 242 TWTTDVTHQIIRDNIGRSPLYGGKISGKGPRYCPSIEDKVVRFPERERHQIFVEPEGEGT 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y NG+S++LPE++Q  FI T+PGLE+  ++RPGYA+EYDY+NP +L P+LETKK+ G
Sbjct: 302 EEMYLNGLSSSLPEDVQTAFIHTLPGLERAEVMRPGYAVEYDYLNPIQLLPSLETKKLEG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQ NGT+GYEEAAAQGL+AGIN+A   +    +  SR+D+YIGV+IDDL +KG  E
Sbjct: 362 LFLAGQTNGTSGYEEAAAQGLMAGINAALVLSGEKPLILSRSDAYIGVLIDDLVTKGTQE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR++LR D+AD RLTP+    G     R +R  +  +    ++++L +  
Sbjct: 422 PYRMFTSRAEYRLNLRHDDADQRLTPLSHAHGLATGERMERLKEKARAIAEVKAILTASR 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
             S+                +A E L  P+ SI ++ +  P    +   V+++++++  Y
Sbjct: 482 KGSQ----------------SATEILKRPEVSIADILADVPSLSTYDEAVLQQVELDVKY 525

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  E +     E  LIP  F+Y  +  +SNE +EK   + P +L QA +I G+ 
Sbjct: 526 EGYILRQEREVERFARLENILIPDGFNYDKVDGISNESREKFKQILPRSLGQAGRISGVR 585

Query: 603 PAALNLLLIYI--KKNTVKLN 621
            + + +L+++I  +K   ++N
Sbjct: 586 SSDIAILMVHISQEKQERQVN 606


>gi|302381484|ref|YP_003817307.1| glucose inhibited division protein A [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192112|gb|ADK99683.1| glucose inhibited division protein A [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 641

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/615 (51%), Positives = 415/615 (67%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            S+DVIVIGGGHAGCEAAA +A+ GA T L+T K  T+G MSCNPAIGGLGKGHLVREID
Sbjct: 25  HSFDVIVIGGGHAGCEAAAASARTGARTLLLTQKLETVGEMSCNPAIGGLGKGHLVREID 84

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGR+AD +GIQFR+LN  KG AVRGPR+Q DR LYR AMQ E+    NL ++ G 
Sbjct: 85  ALDGLMGRLADVSGIQFRMLNRSKGAAVRGPRSQIDRRLYREAMQAELAGTPNLTLMAGT 144

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                   + +  +   +   +R   VVLTTGTFL GVIH G ++ PAGR G++PS  L 
Sbjct: 145 AEALMLNGDRVVGVTTGEGLDLRAGAVVLTTGTFLNGVIHQGDVRTPAGRHGEAPSTGLA 204

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                     GRLKTGTPARLDG+TI WD+ E Q AD   +PFSF+TD+I+  QI CGIT
Sbjct: 205 RDLYGAGLKMGRLKTGTPARLDGRTIGWDRLEMQAADAEPVPFSFLTDRISVPQIACGIT 264

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH II  N+  SA+Y G +   GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+  
Sbjct: 265 QTTEQTHAIIAANLGESAVYGGHLTGRGPRYCPSIEDKVVRFADKTSHQVFLEPEGLDDP 324

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST++  E Q  F+RT+PGLE V + R GYAIEYDY++P+EL   LE K+  GL
Sbjct: 325 TVYPNGISTSVSPETQMAFLRTMPGLEAVEVFRFGYAIEYDYVDPRELTSALEVKRRPGL 384

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEA AQGL+AG+N+AR +     I   R  +YIGVMIDDL ++GV EP
Sbjct: 385 YLAGQINGTTGYEEAGAQGLIAGLNAARAAAGSPEIVLGRDQAYIGVMIDDLVTRGVTEP 444

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR DNAD RLTP+G+  G +   R+  F           +L++    
Sbjct: 445 YRMFTSRAEYRLTLRADNADQRLTPVGIGAGIVCGARRAAFEAKADTLAEATALVRDTRF 504

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T     +  I+   DG+ R+  + L+YP   +    +  P    +   + E+++I++ YA
Sbjct: 505 TPNEAQALGIAVNADGQRRSMRDLLAYPGVDLTQFETAWPIIGSWPVAIREQVEIDAGYA 564

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  EA+ ++ EE   +P   DY+++  LSNE++EKLS+++P  L QA +IEG+TP
Sbjct: 565 GYLDRQTAEAEALRREEALTLPASLDYAAIGGLSNEVREKLSLVQPRTLGQAGRIEGVTP 624

Query: 604 AALNLLLIYIKKNTV 618
            AL  LL ++K+ +V
Sbjct: 625 GALTALLSHVKRTSV 639


>gi|282881765|ref|ZP_06290423.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus lacrimalis 315-B]
 gi|281298375|gb|EFA90813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus lacrimalis 315-B]
          Length = 641

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/621 (42%), Positives = 377/621 (60%), Gaps = 6/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IVIG GHAG EA   AA++G  T ++    + + +M+CNP +GG GKGHLVREIDA
Sbjct: 18  DYDCIVIGAGHAGSEAGLAAARMGCKTLILCINLNAVANMACNPNVGGTGKGHLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M+R + +QENLD+ + E 
Sbjct: 78  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHETMKRVLENQENLDLKEDEA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ ++ +  +  TVVL +GT+LRG +++G++   +G  G  P+N L  
Sbjct: 138 VRILKEDNKVCGVLTRNGARYKAKTVVLCSGTYLRGRVYMGEVNYSSGPTGFGPANELSK 197

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECG 241
           S  + F     RLKTGTPAR+   +I +   E+Q  DE+++PFSF      +   Q  C 
Sbjct: 198 SLEEDFSMKLMRLKTGTPARVLRSSIDFSCMEEQRGDEKIVPFSFKNYDKDMNIDQELCH 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  + H+II +NI  SA+  GDI   GPRYCPSIEDK+ RF ++N HQ+F+EPEGL 
Sbjct: 258 LTYTTEKCHQIIRDNINRSALSLGDITGKGPRYCPSIEDKVTRFKDKNSHQVFIEPEGLT 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP E+Q++F + I GL+   I+RP YAIEYD I+   L   LE     
Sbjct: 318 TDEMYIQGVSSSLPVEVQNEFYKEIIGLKNCKILRPAYAIEYDAIDATLLKRNLEHMDYE 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEAA+QGLVAGIN+A K    +     R+  YIGV+IDDL +KG  
Sbjct: 378 GLFFAGQINGSSGYEEAASQGLVAGINAALKVQGKEPFIIDRSQGYIGVLIDDLVTKGTK 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR++LR DNAD RLT IG  LG + E R K+F    +        ++S+
Sbjct: 438 EPYRMMTARAEYRLTLRQDNADLRLTQIGYDLGLVDEDRYKKFLYRKENIEKELERVRSI 497

Query: 482 VLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +     ++     ++  +   + T  E L  P+ + + L  +  D  K    +I+ ++I
Sbjct: 498 RINPTEENNNIIRKLNSTELKNSLTLAELLRRPELNYEKLADLDKDRPKLRKDIIDNVEI 557

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q I+ ++ K  E R++ KD DY  +  L  E +EKLS ++P ++ QA +I
Sbjct: 558 EIKYEGYIKKQEIQIRQYKKLENRVLSKDLDYKKIDGLRLEAREKLSDIRPESIGQAGRI 617

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++PA +N+LLIY++    +
Sbjct: 618 TGVSPADINVLLIYLESQRRR 638


>gi|325105730|ref|YP_004275384.1| glucose inhibited division protein A [Pedobacter saltans DSM 12145]
 gi|324974578|gb|ADY53562.1| glucose inhibited division protein A [Pedobacter saltans DSM 12145]
          Length = 620

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/621 (44%), Positives = 382/621 (61%), Gaps = 7/621 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+GGGHAGCEAA  AA LG+ T LIT    TI  MSCNPA+GG+ KG ++R
Sbjct: 1   MFNK-YDVIVVGGGHAGCEAATAAANLGSKTLLITMNMGTIAQMSCNPAMGGVAKGQILR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G +AD + IQFR+LN  KGPA+  PRTQ DR  +    +  +    NLD+ 
Sbjct: 60  EIDAMGGKSGIIADVSTIQFRMLNRSKGPAMWSPRTQNDRMRFAEEWRLTLEQTPNLDIW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + N +  +       I   +VVLT GTFL G+IHIG+ ++  GR G+  + 
Sbjct: 120 QDMVNRLIIKDNKVCGVQTSLGVKIESESVVLTNGTFLNGIIHIGEKQMGGGRTGEKSAT 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    ++  F+ GR+KTGTP R+DG+++ +   E+Q+ D     FS+   K T +Q  C
Sbjct: 180 GITEHLVELGFEAGRMKTGTPPRVDGRSLNYSVMEEQWGDTDGGKFSYTDTKTTLQQRCC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG 
Sbjct: 240 WITYTNDKVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGE 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG ST+LPE++Q + IR IPG E   + RPGYAIEYDY  P++L  TLET  I
Sbjct: 300 KTVEIYVNGFSTSLPEDVQFKAIRLIPGFENAKLYRPGYAIEYDYFPPQQLDLTLETLLI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQG VAG+N+ +K N    +   R++SYIGV+IDDL +KG 
Sbjct: 360 KNLFFAGQINGTTGYEEAAAQGFVAGVNAHQKVNDKHELILKRSESYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RL+PIG  LG + E R ++    I   N +    K 
Sbjct: 420 EEPYRMFTSRAEHRLLLRQDNADERLSPIGYDLGLVSEERLQKVKDKISNANAIIEKAKE 479

Query: 481 LVLTSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLF----SICPDARKFSSLVIE 534
           + L++   +           T     Y  L+ P   +++L     +      +F +  IE
Sbjct: 480 IKLSTTEANPFLEKLNTSTITHGTKLYNLLTRPQIEVKDLRVMSSTFDTYLTQFDNETIE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           + +I+  Y +Y  +++   +++K  E + I  +FDY++L +LS E +EKL  +KP  L Q
Sbjct: 540 QAEIKIKYESYFDKELEIVEKMKKMEDKEINPNFDYNTLTSLSKESREKLIKIKPRTLGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G+ P+ + +L++++ K
Sbjct: 600 ASRISGVKPSDITILMVHMSK 620


>gi|150024117|ref|YP_001294943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacterium psychrophilum JIP02/86]
 gi|205831513|sp|A6GVK0|MNMG_FLAPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149770658|emb|CAL42122.1| Glucose inhibited division protein A [Flavobacterium psychrophilum
           JIP02/86]
          Length = 623

 Score =  735 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 382/623 (61%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA +A LG ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLEEYDVIVVGAGHAGCEAAAASANLGCSTLLVTMSLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDALGGYSGIVSDNTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E N +  I       IR  +VVLT GTFL G+IHIG  +   GR G+S + 
Sbjct: 121 QEMVSGMVIENNKVLGIKTSLGLTIRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGESAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +K  F++GR+KTGTP R+DG+++ + K   +  D     FS+    K    Q +
Sbjct: 181 GITEDLVKAGFESGRMKTGTPPRVDGRSLDYSKMNVEAGDINPSKFSYSDVTKPLVHQRD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+L  H I+ E  + S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSLLVHDILREGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE+IQ + +R++ G EKV   R GYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTCEVYVNGFSTSLPEDIQFKALRSVVGFEKVKFFRAGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGL+ AGQINGTTGYEEAA+QGL+AGIN+A K  + + +   R ++YIGV+IDDL +KG
Sbjct: 361 ISGLYFAGQINGTTGYEEAASQGLMAGINAALKVKEKEPLILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R  LR DNAD RLTP+   LG   + R +R    + E   + +  K
Sbjct: 421 TEEPYRMFTSRAEFRTLLRQDNADFRLTPMSNTLGLASDARLRRMEHKLNESEKMVAFFK 480

Query: 480 SLVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
              +T    +   I+ K  +  +T   ++ LS P   + ++                  +
Sbjct: 481 ETSITPTEANPVLIAKKTAEVNQTDKIFKILSRPQIDLSDVLKFENVANYVANNNVDQEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +I+  Y+ Y  ++   A+++   E   IP+ FDY  + ++S E K+KLS ++P  +
Sbjct: 541 LEQAEIQVKYSGYIDKERANAEKLTRLEDLKIPEKFDYHQIKSMSIEAKQKLSKIRPVTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++LL+++ +
Sbjct: 601 SQASRISGVSPSDISVLLVFLGR 623


>gi|259417090|ref|ZP_05741009.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter sp. TrichCH4B]
 gi|259345996|gb|EEW57810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Silicibacter sp. TrichCH4B]
          Length = 624

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/616 (53%), Positives = 433/616 (70%), Gaps = 2/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDV+V+GGGHAG EAA  +A++G  TAL+T +   IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSHYDVVVVGGGHAGTEAAHASARMGVRTALVTLRRDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR +YR  + +   +Q NL++I
Sbjct: 61  EIDAMDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQADRSIYRTEVLKATETQLNLNII 120

Query: 121 QGEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           +GEV  F  E  N +  + + D S I  S VVLT+GTFL GVIHIG      GRMGD PS
Sbjct: 121 EGEVIDFLMEGENTVRGVRLADESEISASAVVLTSGTFLNGVIHIGNQSKSGGRMGDRPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L      FD   GRLKTGTP RLDG+TI WD  + Q  D+    FSFM+  ++  QI 
Sbjct: 181 IKLAERLKSFDLPLGRLKTGTPPRLDGRTINWDVLDSQPGDDEPTLFSFMSKSVSAPQIA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN  TH II +N++ SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 241 CGITHTNERTHEIIRDNLELSAMYGGHIEGVGPRYCPSIEDKIVRFSDKSSHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++   VYPNGIST+LPEE+Q  ++++I GLE+ +I++PGYAIEYDY++P+ L  TLE + 
Sbjct: 301 VSDHTVYPNGISTSLPEEVQITYVQSIYGLEQASILQPGYAIEYDYVDPRALRSTLELRD 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGL+LAGQINGTTGYEEA AQGLVAG+N+A K      I F R+ SYIGVMIDDL + G
Sbjct: 361 ISGLYLAGQINGTTGYEEAGAQGLVAGLNAASKCRGKGDIIFGRSTSYIGVMIDDLITNG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLTP+  +LGCI   R   F K +     ++S L+
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTPLAKELGCISAERTTAFDKKMAGIEGVKSALE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +++LT K L  + I   QDG  R+  + L++P+   +++  + P+ +     + E++  +
Sbjct: 481 AVLLTPKQLVQSGIQVNQDGNKRSGIDVLAFPNVEFEHILPLFPELQATEKEIREQIMRD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           S YA Y  RQ  E   +K +E+  IP +FDYS +  LS EL++KL+  +P +L QA++I+
Sbjct: 541 SLYANYISRQEKEVAALKKDEEYSIPSNFDYS-IDGLSRELQQKLNKSRPESLAQAARID 599

Query: 600 GMTPAALNLLLIYIKK 615
           G+TPAAL L+L  +K+
Sbjct: 600 GITPAALALILGSLKR 615


>gi|78356852|ref|YP_388301.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|123552447|sp|Q310P0|MNMG_DESDG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78219257|gb|ABB38606.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 628

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/614 (43%), Positives = 364/614 (59%), Gaps = 3/614 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D++V+G GHAGCEAA  +A+LG  T L+T     IG +SCNPAIGGL KGH+V+EIDAL
Sbjct: 12  FDLVVVGAGHAGCEAAMASARLGLKTLLLTINADRIGHLSCNPAIGGLAKGHMVKEIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  AD AGIQFR+LN  KGPAV   R Q DR+ Y  A+QR++  Q+NL V Q    
Sbjct: 72  GGMMGLWADEAGIQFRLLNTSKGPAVHSTRAQIDRDAYMKAVQRDVFRQDNLWVWQDTAE 131

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    + +        R   V +T GTF+ G+IH+G      GR+GD  +  L  S
Sbjct: 132 NVLVENGRAAGVSTLLGQEFRSRAVCVTAGTFMSGLIHVGLTHFSGGRLGDPAAQGLSAS 191

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                 + GRLKTGT  RL   +I +D   +Q  D    PFSF +      Q+ C +T T
Sbjct: 192 LRAVGLELGRLKTGTTPRLLRDSINFDVMVEQPGDNPPRPFSFRSRHARMPQVPCYLTWT 251

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I   G RYCPSIEDKI RF +++ HQIF+EPEGL++  V
Sbjct: 252 NEATHEAIRAGFDRSPMFTGIISGTGARYCPSIEDKIARFPDKDRHQIFIEPEGLHSPEV 311

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YP GI T+LP ++Q   I TIPGLEK  I+RPGYAIEYDY NP +L PTLETK + GL++
Sbjct: 312 YPGGIPTSLPLDVQKAMIATIPGLEKAQIVRPGYAIEYDYANPTQLKPTLETKVLPGLWM 371

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAAAQGL A +N       L      R ++Y+ V++DDL +KG LEPYR
Sbjct: 372 AGQVNGTSGYEEAAAQGLWAALNIFCGLRGLPAFIPGRDEAYMAVLVDDLVTKGTLEPYR 431

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NAD+RLTP G  LG + + + + +         L + L +  +  
Sbjct: 432 MFTSRAEHRLLLRENNADSRLTPAGRSLGLVDDAQWQLYTAKKTALEQLLAELDARQVRP 491

Query: 486 KNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
              +      ++     ++ +  + L  P   I +L +   +   F++ V+E  Q    Y
Sbjct: 492 DAATRDIFVHMNEAVPTRSVSLADLLRRPALGITDLQAFGLETDGFAADVLEEAQTIVKY 551

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           + Y  RQ          E  +I +  DY+++  L+ E  EKLS ++P  L QA++I G+T
Sbjct: 552 SGYLKRQEELVLRTARHESVVISEAADYAAVHGLTREAVEKLSKVRPRTLGQAARISGIT 611

Query: 603 PAALNLLLIYIKKN 616
           PAAL+ + +Y+KKN
Sbjct: 612 PAALSCIEVYLKKN 625


>gi|42525229|ref|NP_970609.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bdellovibrio bacteriovorus HD100]
 gi|81170524|sp|Q6MGL6|MNMG_BDEBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39577440|emb|CAE81263.1| glucose inhibited division protein A [Bdellovibrio bacteriovorus
           HD100]
          Length = 642

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/629 (47%), Positives = 397/629 (63%), Gaps = 6/629 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAG EA   +A+LG +T ++T  T  IG MSCNP+IGGL KGH+VR
Sbjct: 1   MANKKYDVIVVGAGHAGIEACLSSARLGLNTLMVTTNTDRIGYMSCNPSIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G MG  AD   IQ++ LN  KGPAVRG R Q D+ LY    +  + +Q NL+V+
Sbjct: 61  EIDVLGGQMGVAADETCIQYKRLNASKGPAVRGTRVQNDKHLYSQFQKEALYNQPNLEVL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEV     EK++   +V+QD S I     ++TTGTF+ GV+HIG  +   GR+GD PS 
Sbjct: 121 QGEVKRLILEKDLCVGVVLQDGSEIFGKATIITTGTFMNGVMHIGLRQEAGGRVGDQPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-MTDKITNRQIE 239
            L +   +F F+  RLKTGTPARL   +I W KT  Q  DE++ PFSF  +DK+   Q+ 
Sbjct: 181 GLSDQLAQFGFEVKRLKTGTPARLLKDSIDWSKTIPQAGDEKVYPFSFRSSDKLKLPQVL 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH II  N+  S +Y G I+  GPRYCPSIEDKI RF ER  HQ FLEPEG
Sbjct: 241 CYLTRTTEETHDIIRGNLDKSPMYCGIIEGVGPRYCPSIEDKITRFAERTSHQTFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+TD++Y  GIST+LPE++Q +F++TIPGLE V + R GYA+EYDYI P +++  LET+ 
Sbjct: 301 LSTDLIYLQGISTSLPEDVQDRFLKTIPGLENVKVARYGYAVEYDYIEPTQIWHRLETRT 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEAAAQGL+AGIN+A      +     R  +Y+GVMIDDL +KG
Sbjct: 361 IRQLFLAGQINGTSGYEEAAAQGLIAGINAAHSILGREEFILGRDQAYMGVMIDDLVTKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R+ LR DN  +RL+ +G KLG +     +      +    L   LK
Sbjct: 421 TREPYRMFTSRAEHRLVLREDNTIDRLSDLGRKLGLVSAESFELLTNLRERRQVLHDRLK 480

Query: 480 SLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           + VL           +I      K+ T  E L  P+ +  +L  +  +       V+E +
Sbjct: 481 NTVLYPTKDIQAILATIPTPAMSKSLTFEELLRRPELTSSHLELLNFEL-DPDPNVVEPV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQM    + K  E+ L+P D  Y+ +  LSNE K+KL  +KP  L QA 
Sbjct: 540 EIEVKYSGYVKRQMDLIVQSKRLEEMLLPDDLAYAEIRGLSNEEKDKLLRVKPRTLGQAQ 599

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           +I G+ P+A+  ++I++K +  K+ E+ L
Sbjct: 600 RISGVNPSAIQAIMIHLKGHK-KIKEMGL 627


>gi|300814734|ref|ZP_07094982.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511121|gb|EFK38373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 641

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/621 (42%), Positives = 377/621 (60%), Gaps = 6/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IVIG GHAG EA   AA++G  T ++    + + +M+CNP +GG GKGHLVREIDA
Sbjct: 18  DYDCIVIGAGHAGSEAGLAAARMGCKTLILCINLNAVANMACNPNVGGTGKGHLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M+R + +QENLD+ + E 
Sbjct: 78  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHETMKRVLENQENLDLKEDEA 137

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N +  ++ ++ +  +  TVVL +GT+LRG +++G++   +G  G  P+N L  
Sbjct: 138 VRILKEDNKVCGVLTRNGARYKAKTVVLCSGTYLRGRVYMGEVNYSSGPTGFGPANELSK 197

Query: 185 SFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECG 241
           S  + F     RLKTGTPAR+   +I +   E+Q  DE+++PFSF      +   Q  C 
Sbjct: 198 SLEEDFSMKLMRLKTGTPARVLRSSIDFSCMEEQRGDEKIVPFSFKNYDKDMNIDQELCH 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  + H+II +NI  SA+  GDI   GPRYCPSIEDK+ RF ++N HQ+F+EPEGL 
Sbjct: 258 LTYTTEKCHQIIRDNINRSALSLGDITGKGPRYCPSIEDKVTRFKDKNSHQVFIEPEGLT 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP E+Q++F + I GL+   I+RP YAIEYD I+   L   LE     
Sbjct: 318 TDEMYIQGVSSSLPVEVQNEFYKEIIGLKNCKILRPAYAIEYDAIDATLLKRNLEHMDYE 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQING++GYEEAA+QGLVAGIN+A K    +     R+  YIGV+IDDL +KG  
Sbjct: 378 GLFFAGQINGSSGYEEAASQGLVAGINAALKVQGKEPFIIDRSQGYIGVLIDDLVTKGTK 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR++LR DNAD RLT IG  LG + E R K++    +        ++S+
Sbjct: 438 EPYRMMTARAEYRLTLRQDNADLRLTQIGYDLGLVDEDRYKKYLYRKENIEKELDRVRSI 497

Query: 482 VLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +     ++     ++  +   + T  E L  P+ + + L  +  D  K    +I+ ++I
Sbjct: 498 RINPTEENNNIIRKLNSTELKNSLTLTELLRRPELNYEKLADLDKDRPKLRKDIIDNVEI 557

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q I+ ++ K  E R++ KD DY  +  L  E +EKLS ++P ++ QA +I
Sbjct: 558 EIKYEGYIKKQEIQIRQYKKLENRVLSKDLDYKKIDGLRLEAREKLSDIRPESIGQAGRI 617

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G++PA +N+LLIY++    +
Sbjct: 618 TGVSPADINVLLIYLESQRRR 638


>gi|239907242|ref|YP_002953983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio magneticus RS-1]
 gi|239797108|dbj|BAH76097.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio magneticus RS-1]
          Length = 623

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/623 (44%), Positives = 372/623 (59%), Gaps = 3/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + ++D+IVIG GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VR
Sbjct: 1   MTSMTFDIIVIGAGHAGCEAAMAAARLGHKTLLLTQNVDRIGHLSCNPAIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MG  ADAAGIQFR LN  KGPAVR  R Q DR+ Y   ++R++ +QENL V 
Sbjct: 61  EIDALGGMMGLWADAAGIQFRTLNTSKGPAVRATRAQIDRDEYMRVVKRDVFAQENLTVR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q        E   +S + +    +     V++TTGTFL G+IHIG  ++  GR+GD PS+
Sbjct: 121 QDSAEDILAEAGRVSGLRVASGEIFATRAVIVTTGTFLGGLIHIGLTQLRGGRLGDPPSD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  +     GRLKTGT  RL  K+I +  T  Q  D     FSF        Q+ C
Sbjct: 181 GLPASLRRHGLIFGRLKTGTTPRLLAKSIDFSVTVPQPGDTPPPGFSFHGPGPVLPQVPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH  I    + S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL
Sbjct: 241 YLTHTNARTHEAIRAGFERSPLFTGVIQGTGARYCPSVEDKVARFPERDRHHVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +YPNGIST+LP E Q   I TIPGLE   I+RPGYAIEYDY +P +L PTLETK +
Sbjct: 301 ESPEIYPNGISTSLPIETQKAMIATIPGLENAVIVRPGYAIEYDYADPVQLSPTLETKAL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEAAAQGL A +N+    +        R  +Y+ V++DDL +KG 
Sbjct: 361 PGLYLAGQINGTSGYEEAAAQGLWASLNACLALSGRPPFLLRRDQAYMAVLVDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR  NAD RLT +G ++G +GE +  R+           + L  
Sbjct: 421 SEPYRMFTSRAEHRLLLREGNADARLTALGREIGLVGEAQWARYQAKEASIAQALAGLAE 480

Query: 481 LVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +      + +  ++  K   ++    E L  P  ++ +LF   P+  +  +      +
Sbjct: 481 RRVRPGDCDDAAWEALGGKPAERSLRLDELLRRPAVTLPDLFRFWPELAELPAEAAVEAE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               Y  Y  RQ   A      E   +P+D DY+++  LS E+ EKL  + P +L QAS+
Sbjct: 541 TRVKYDGYLKRQEELAGRAGRHEGVELPQDLDYAAVAGLSREVVEKLIRVAPRSLGQASR 600

Query: 598 IEGMTPAALNLLLIYIKKNTVKL 620
           I G+TPAA++ L I++KK + + 
Sbjct: 601 ISGVTPAAVSCLEIHLKKLSRQA 623


>gi|219670949|ref|YP_002461384.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfitobacterium hafniense DCB-2]
 gi|254811508|sp|B8G0L2|MNMG_DESHD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|219541209|gb|ACL22948.1| glucose inhibited division protein A [Desulfitobacterium hafniense
           DCB-2]
          Length = 637

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/624 (42%), Positives = 379/624 (60%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T LIT     I  M CNP++GG  KGHLVREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAALAAARMGGRTLLITLSLDNIAHMDCNPSLGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   +Q R+LN  KGPAV   R Q+D++ Y L M+  IL QENL + Q  V
Sbjct: 67  LGGQMGITADETSLQVRMLNTGKGPAVHALRIQSDKQAYHLHMRNAILGQENLVLHQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S +V +  +      V+LT+GT+LRG I IG      G  G   + +L  
Sbjct: 127 ERIKTEDGKVSGVVTRTGAFYAAPNVILTSGTYLRGRIIIGDTMYEGGPNGQQTAMNLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD------KITNRQI 238
           +  +   + GR KTGTP R+  +++ + K   Q  D     +SFM        +  ++QI
Sbjct: 187 ALKELGLELGRFKTGTPPRIHRRSVDYTKFTVQPGDSVPWRYSFMPTQSMFWGRDVDKQI 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  T  ETH+II +NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 247 PCWLGYTTPETHQIIQDNIHRAPLYSGKIEGIGPRYCPSIEDKVVRFADRPTHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N+D +Y  G+ST++PEEIQ+  I +IPGLEK  ++RPGYAIEYDY+ P +L  +LE +
Sbjct: 307 GWNSDELYMAGLSTSMPEEIQYDIIHSIPGLEKAELLRPGYAIEYDYVKPYQLSLSLEVR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI GLF AGQ+NGT+GYEEAAAQGL+AGIN+A +    +     R++ Y+GV+IDDL +K
Sbjct: 367 KIPGLFTAGQLNGTSGYEEAAAQGLLAGINAALRVQGKEPFIVRRSEGYLGVLIDDLVNK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K       + +L 
Sbjct: 427 GVKEPYRLLTSRAEYRLILRQDNADLRLTPRGREIGLVKDERWAAFQKKKAAIAEINALW 486

Query: 479 KSLVLTS--KNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +    +   ++L+     +         +  E +  P+ +I  +  + P   ++    + 
Sbjct: 487 RGTTFSPLNEHLAEVLAGVHSAPVHGGISGEELMRRPEITINEIKQLIPQLAEYDEEALL 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
              IE  YA Y  +Q+ E +     E+R+IP++  Y  +  LS E +++L  + P N+ Q
Sbjct: 547 EAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAPANMGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A++I G+TPA +++LL+Y+++   
Sbjct: 607 ATRITGVTPADISVLLVYLEQKRR 630


>gi|89897800|ref|YP_521287.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfitobacterium hafniense Y51]
 gi|122480418|sp|Q24M99|MNMG_DESHY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89337248|dbj|BAE86843.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 637

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/624 (42%), Positives = 379/624 (60%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA++G  T LIT     I  M CNP++GG  KGHLVREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAALAAARMGGRTLLITLSLDNIAHMDCNPSLGGPAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   +Q R+LN  KGPAV   R Q+D++ Y L M+  IL QENL + Q  V
Sbjct: 67  LGGQMGITADETSLQVRMLNTGKGPAVHALRIQSDKQAYHLHMRNAILGQENLVLHQALV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +S +V +  +      V+LT+GT+LRG I IG      G  G   + +L  
Sbjct: 127 ERIKTEDGKVSGVVTRTGAFYAAPNVILTSGTYLRGRIIIGDAMYEGGPNGQQTAMNLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD------KITNRQI 238
           +  +   + GR KTGTP R+  +++ + K   Q  D     +SFM        +  ++QI
Sbjct: 187 ALKELGLELGRFKTGTPPRIHRRSVDYTKFTVQPGDSVPWRYSFMPTQSMFWGRDVDKQI 246

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  T  ETH+II +NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 247 PCWLGYTTPETHQIIQDNIHRAPLYSGKIEGIGPRYCPSIEDKVVRFADRPTHQIFLEPE 306

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G N+D +Y  G+ST++PEEIQ+  I +IPGLEK  ++RPGYAIEYDY+ P +L  +LE +
Sbjct: 307 GWNSDELYVAGLSTSMPEEIQYDIIHSIPGLEKAELLRPGYAIEYDYVKPYQLSLSLEVR 366

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I GLF AGQ+NGT+GYEEAAAQGL+AGIN+A +    +     R++ Y+GV+IDDL +K
Sbjct: 367 RIPGLFTAGQLNGTSGYEEAAAQGLLAGINAALRVQGKEPFIVRRSEGYLGVLIDDLVNK 426

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAEYR+ LR DNAD RLTP G ++G + + R   F K       + +L 
Sbjct: 427 GVKEPYRLLTSRAEYRLILRQDNADLRLTPRGREVGLVKDERWAAFQKKKAAIAEINALW 486

Query: 479 KSLVLTS--KNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +    +   ++L+     +         +  E +  P+ +I  +  + P   ++    + 
Sbjct: 487 RGTTFSPLNEHLAEVLAGVHSAPVHGGISGEELMRRPEITINEIKQLIPQLAEYDEEALL 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
              IE  YA Y  +Q+ E +     E+R+IP++  Y  +  LS E +++L  + P N+ Q
Sbjct: 547 EAGIEIKYAGYIEKQLAEIERFAKMEERMIPEEIVYDQIKGLSTEGRQRLKEVAPANMGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           A++I G+TPA +++LL+Y+++   
Sbjct: 607 ATRITGVTPADISVLLVYLEQKRR 630


>gi|119952976|ref|YP_945185.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia turicatae 91E135]
 gi|119861747|gb|AAX17515.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Borrelia turicatae 91E135]
          Length = 628

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/626 (45%), Positives = 404/626 (64%), Gaps = 10/626 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+  +D IVIGGGHAG EA+   ++L   T LIT    TIG +SCNPAIGGL KG++VRE
Sbjct: 7   IDMDFDAIVIGGGHAGIEASLALSRLNFKTLLITQNLDTIGKLSCNPAIGGLAKGNMVRE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  +GPAV+ PR QAD+ +Y++  +  +  Q NLD+ Q
Sbjct: 67  IDALGGEMGCLVDFSMIQFRILNKSRGPAVQAPRAQADKLVYQVKAKETLERQINLDLFQ 126

Query: 122 GEVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V+    N+ +N I  +V +  +      VVLTTGTFLRG I IG+ +   GR+ +  +
Sbjct: 127 DTVSDFLLNSMRNRIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYRACMGRISEPAA 186

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    ++  F+ GRLKTGTPAR+  K+I + KTE QF D  +IPFSF   KI   Q+ 
Sbjct: 187 YGLEKILLELGFEMGRLKTGTPARVHRKSINFAKTEIQFGDSDIIPFSFSNTKIDKVQLS 246

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN +TH II +N+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG
Sbjct: 247 CYITYTNKKTHAIISDNMHLSPLYSGEIIGNGPRYCPSIEDKIVKFKDKDKHQIFIEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+T+ +Y NG+S++LPE++Q + I +I GLE   I RPGYA+EYDYINP EL+ +LETK+
Sbjct: 307 LSTEEMYLNGLSSSLPEDVQKRLINSIDGLENAVITRPGYAVEYDYINPIELYASLETKR 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF+AGQ NG++GYEEAAAQGL+AGIN+A K    D +   RT SYIGV+IDDL +KG
Sbjct: 367 VKGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQGKDPMILPRTSSYIGVLIDDLVTKG 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++ LL+
Sbjct: 427 TKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQVEEIKELLR 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              L  +  S+  +   +   ++  Y  +  P  ++ +L  I P     S +++E+++++
Sbjct: 487 QRRLKEREASTLQL---KKHISKDFYHIIKDPYINLSDLIDIDPKLNA-SKVILEQVELD 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ    +++   E   +P DFDY  +  LS E +EK   ++P NL QAS+I 
Sbjct: 543 IKYEGYINRQKDLIRKMNNLELIKLPLDFDY-EIDGLSREAREKFVKIQPANLAQASRIS 601

Query: 600 GMTPAALNLLLIYIKKNTVKLNEIVL 625
           G+    + +LLIY    +   N++VL
Sbjct: 602 GVRNTDIQVLLIYF---SSPKNKVVL 624


>gi|325478848|gb|EGC81958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 632

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/625 (42%), Positives = 380/625 (60%), Gaps = 6/625 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDV+V+G GHAGCEAA   A+LG  T ++T    +I  M CNP IGG GKGH+VREID
Sbjct: 8   ESYDVVVVGAGHAGCEAALATARLGLKTLILTTSLESIADMPCNPNIGGTGKGHIVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D   IQ R+LN  KGPAV   R QAD++LY   M++ + ++ENLD+ + E
Sbjct: 68  ALGGQMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKKLYHDEMKKTLENEENLDIFEQE 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V   N E   I S      ++     +++ TGT+L G I IG  +  +G  G S +  L 
Sbjct: 128 VDKINYEDGKIVSCETVQGAIYDTKALIICTGTYLNGKILIGDYEKVSGPHGLSAATFLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIEC 240
           +S  +  F   R KTGTPAR+D K++  +KTE Q  D  +IPFSF+ +        Q +C
Sbjct: 188 DSLEEMGFKLRRFKTGTPARVDRKSLHLEKTEIQKGDSEVIPFSFINEGEDFSDRHQEDC 247

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+ ET  IIMEN+  S IY G +K  GPRYCPSIEDK+VRF +R+ HQ+F+EPE L
Sbjct: 248 YLTYTSPETKEIIMENLYRSPIYGGHVKGIGPRYCPSIEDKMVRFPDRDVHQVFIEPESL 307

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ + L+ TLE+K  
Sbjct: 308 STDEMYVQGVSSSLPQEVQFDFYKTIIGLEDVKIMRPAYAIEYDMIDTRNLYRTLESKDY 367

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQING++GYEEAA QG+VAGIN+A K    + +   R+D+YIGV+IDDL ++G 
Sbjct: 368 EGLYFAGQINGSSGYEEAAGQGIVAGINAALKIKGKEPLILDRSDAYIGVLIDDLVTEGT 427

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR EYR+++R DNAD RLT  G ++G + E R ++  +  +  +   + LK+
Sbjct: 428 NEPYRMMTSRCEYRLTMRQDNADQRLTERGYEIGLVSEDRYQKMKEKRKAIDDEIARLKN 487

Query: 481 LVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           ++LT K   +    S+         + Y+ +  P+     L     +          + Q
Sbjct: 488 VILTPKEEVNEKLVSLGSTPLKNALSLYDLIKRPELDYVKLKDFDLERPNLPKFQQIQAQ 547

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  +QM +  + K  E + + K+ DY+ +  L  E  EKL+ ++P +L QAS+
Sbjct: 548 TEIKYEGYIKKQMADIDKFKKLEAKELDKNIDYTKIAGLKKESAEKLNEIQPESLGQASR 607

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNE 622
           I G++PA +N+LLI +K   +   +
Sbjct: 608 ISGVSPADINVLLIRLKTGELNGEK 632


>gi|203284099|ref|YP_002221839.1| glucose inhibited division protein A [Borrelia duttonii Ly]
 gi|201083542|gb|ACH93133.1| glucose inhibited division protein A [Borrelia duttonii Ly]
          Length = 626

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/630 (45%), Positives = 403/630 (63%), Gaps = 13/630 (2%)

Query: 1   MINR---SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           M  +    +D IVIGGGHAG EA+   A+L   T LIT    T+G +SCNPAIGGL KG+
Sbjct: 1   MFRKIGMDFDAIVIGGGHAGIEASLALARLNFKTILITQNLDTVGKLSCNPAIGGLAKGN 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +VREIDAL G MG + D + IQFR+LN  KGPAV+ PR QAD+ +Y++  +  +  Q NL
Sbjct: 61  MVREIDALGGEMGCLIDFSMIQFRILNKSKGPAVQAPRAQADKLVYQIKAKETLEMQNNL 120

Query: 118 DVIQGEVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           ++ Q  V+    N  KN I  +V +  +      VVLTTGTFLRG I IG+ K   GR+ 
Sbjct: 121 ELFQDTVSDFLLNPMKNKIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYKAYMGRIS 180

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L    ++  F+ GRLKTGTPAR+  ++I + KTE QF D  +IPFSF   KI  
Sbjct: 181 EPAAFGLEKILLELGFEMGRLKTGTPARVHRRSINFAKTEIQFGDSDIIPFSFSNTKIDK 240

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+
Sbjct: 241 TQLSCYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFI 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG+NT  +Y NG+S++LPE++Q + I +I GLE   I RPGYA+EYDYINP EL+ +L
Sbjct: 301 EPEGINTQEMYLNGLSSSLPEDVQKRLINSIDGLEDAVITRPGYAVEYDYINPIELYASL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK++ GLF+AGQ NG++GYEEAAAQGL+AGIN+A K  K D +   RT SYIGV+IDDL
Sbjct: 361 ETKRVEGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQKKDPMILPRTSSYIGVLIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++
Sbjct: 421 VTKGTKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQIEEIK 480

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL+   L  K  SS  +    +      Y  +  P  ++++L +I P     S +++E+
Sbjct: 481 ELLRHRRLKEKEASSFELKRHINK---DFYHIVKDPYINLKDLVNIDPKLNA-SKVILEQ 536

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++++  Y  Y  RQ    +++   E   +P DF+Y  +  LS E +EK   ++P NL QA
Sbjct: 537 VELDIKYEGYINRQKDLIRKMNNLELIKLPLDFNY-EIDGLSREAREKFVKIQPANLAQA 595

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           S++ G+    + +LLIY    +   N++VL
Sbjct: 596 SRVSGVRNTDIQVLLIYF---SNPKNKVVL 622


>gi|163781998|ref|ZP_02176997.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882530|gb|EDP76035.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 616

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/623 (45%), Positives = 395/623 (63%), Gaps = 17/623 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   ++V VIG GHAG EAA  +A++GA T L T    +IG MSCNPAIGG+ KG +VR
Sbjct: 1   MLVEEFEVAVIGAGHAGIEAALASARMGAKTLLFTLNADSIGQMSCNPAIGGIAKGIVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MGR  D  GIQF++LN +KG AV+ PR QAD++ YR  M++    QENL + 
Sbjct: 61  EIDALGGEMGRAIDNTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCEDQENLHIK 120

Query: 121 QGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           Q EV       +N + ++  +     R   VV+TTGTFL G+I+IG    PAGR  +  S
Sbjct: 121 QDEVVDILLNARNEVVAVKTKLGIEYRVKAVVVTTGTFLNGLIYIGDKTFPAGRAWEPRS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----- 234
            SL   + + DF   R KTGTPARLDG+TI +   E+   D+    FSF T+ +      
Sbjct: 181 ESLAEFYKRHDFPLLRFKTGTPARLDGRTIDYSALERAPGDDPPPKFSFWTEPVGSYWFE 240

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +Q++C +T T  +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F ++  H 
Sbjct: 241 AGKKQVDCWMTYTTEKTHEIIRKNLDKTALYGGLIKGVGPRYCPSIEDKVVKFPDKPRHT 300

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEGL+T  VYPNG+ST+LPEE+Q +  R+IPGLEKV ++RP YAIEYD + P ELF
Sbjct: 301 VFLEPEGLDTIEVYPNGLSTSLPEEVQWELYRSIPGLEKVELVRPAYAIEYDVVPPTELF 360

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTLETKKI GLF AG  NGTTGYEEAA QG+VAGIN+A ++   + I   R +SYIGVMI
Sbjct: 361 PTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRALGREPIYLRRDESYIGVMI 420

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDLT+KGVLEPYR+FTSR+E+R+ LR DNA  RL  IG +LG + + + K   +  +E  
Sbjct: 421 DDLTTKGVLEPYRLFTSRSEFRLYLRQDNAILRLAEIGHRLGLLNDEQFKLVRELQEEIE 480

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             +   +            S++  +D ++ T     +  + +++++             V
Sbjct: 481 RWKEFYRR--------ERVSVAVGEDTRSYTVATLFT-ANHTVEDVREKLGYEIPEHPYV 531

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E ++IE  Y  Y  R+    +++K  E   IP+D DY S+  L+NE +EKL  +KP  +
Sbjct: 532 REEVEIELKYEPYIERERKLNEKLKRLEDIRIPEDIDYDSVHGLTNEAREKLKKMKPLTV 591

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA++I+G+TPA++  LLI++ K
Sbjct: 592 GQAARIDGITPASITALLIHLGK 614


>gi|254430251|ref|ZP_05043954.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanobium sp. PCC 7001]
 gi|197624704|gb|EDY37263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanobium sp. PCC 7001]
          Length = 662

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/641 (41%), Positives = 379/641 (59%), Gaps = 17/641 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCE+A  AA+LG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 6   TESFDVIVVGGGHAGCESAVTAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 66  DALGGMIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREA 125

Query: 123 EVAGFNTE------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            V G   E               I+ +     S+     V+LTTGTFL G I +G   + 
Sbjct: 126 MVTGLEVELEQPTEAQGPGPIGRITGVRTYFGSVYAAPAVILTTGTFLGGQIWVGHQSMR 185

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G+  +  L  +     F  GRLKTGTPAR+D ++I  D+ E+Q +D     FSF  
Sbjct: 186 AGRAGEPAAEGLTEALQALGFAMGRLKTGTPARVDRRSIALDRLEEQPSDAEGRYFSFDP 245

Query: 231 D-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
              ++   + C ITRT   THR+I +N+  + IY G I S GPRYCPSIEDKIVRF ++ 
Sbjct: 246 AAWVSGEPMSCHITRTTAATHRLIQDNLHLTPIYGGVIDSKGPRYCPSIEDKIVRFADKE 305

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP YA++YDY+   
Sbjct: 306 SHQIFLEPEGRDTPEIYVQGFSTGLPERLQLELLRTLPGLEQCVMLRPAYAVDYDYLPAT 365

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           +L P+LETK+I+GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+      + F R  SYIG
Sbjct: 366 QLKPSLETKRITGLFSAGQLNGTTGYEEAAAQGLVAGLNAARQLRGQAPVHFPRETSYIG 425

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            MIDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G++LG I  RR + +    +
Sbjct: 426 TMIDDLITKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGLELGLIDARRWQIYTAKQE 485

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
                +  L  + L + + ++ ++  +       + T  + L  P F   +L        
Sbjct: 486 AIEAEKRRLAMVRLKASDPAAAAVEAETGAAIKGSITLADLLRRPGFHSADLVRHGLAGS 545

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
              + V E  +I+  Y+ Y  RQ  +  +++ +  R +P   DY+ +  LS+E +EKL+ 
Sbjct: 546 DLPAEVREGAEIDIKYSGYLARQQQQIDQVRRQADRPLPAGLDYAGIGTLSHEAREKLAA 605

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK-KNTVKLNEIVLV 626
           ++P  L QAS++ G++PA +  L+++++ +   +   +   
Sbjct: 606 VQPHTLGQASRVPGVSPADITALMLWLELRRRREAQPLAAA 646


>gi|296445002|ref|ZP_06886963.1| glucose inhibited division protein A [Methylosinus trichosporium
           OB3b]
 gi|296257423|gb|EFH04489.1| glucose inhibited division protein A [Methylosinus trichosporium
           OB3b]
          Length = 615

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/603 (56%), Positives = 425/603 (70%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   SYDVIVIGGGHAGCEAAA +A+LGA T L+TH   TIG+MSCNPAIGGLGKG LVR
Sbjct: 1   MTRSSYDVIVIGGGHAGCEAAAASARLGARTVLVTHSRDTIGAMSCNPAIGGLGKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADAAGIQFR+LN  KGPAVRGPR QADR+LYR AMQ  I +   LDV+
Sbjct: 61  EIDALDGLMGRVADAAGIQFRLLNRSKGPAVRGPRAQADRKLYRAAMQAAIAAIPGLDVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V         +  + +    ++R   VVLTTGTFL GVIHIG+ +IPAGRMG+ P+ 
Sbjct: 121 EGAVERLVVADGRVCGVEI-GCMVVRAGAVVLTTGTFLNGVIHIGEKRIPAGRMGEQPAI 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     +  F T RLKTGTP RLDG+TI W+K E+Q  DE   PFSF+T +I N QI+C
Sbjct: 180 GLAEDLRRIGFATRRLKTGTPPRLDGRTIAWEKLERQSGDETPEPFSFLTTRIGNPQIDC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRTN   H++I++N+  S + SG I   GPRYCPSIEDK+ RFG+R  HQIFLEPEGL
Sbjct: 240 HITRTNAAAHKVILDNLDRSPLRSGAISGPGPRYCPSIEDKVTRFGDREAHQIFLEPEGL 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNG+ST+LPEE+QH FIR+I GLE+ +I+RPGYAIEYD+++P+EL   LETKKI
Sbjct: 300 DDDTVYPNGVSTSLPEEVQHHFIRSIEGLEQAHILRPGYAIEYDFVDPRELGANLETKKI 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGTTGYEEAAAQGLVAG+N+A +++    I F R ++YIGVMIDDL ++GV
Sbjct: 360 EGLFFAGQLNGTTGYEEAAAQGLVAGLNAAVRASGGAPILFDRAEAYIGVMIDDLVTRGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ +GC+G  R   F +     +  R+LL  
Sbjct: 420 SEPYRMFTSRAEYRLSLRADNADERLTPRGLAIGCVGAERAAAFGERRTRLDNARALLDG 479

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L LT+   +   +   QDG+ R+A+  LSYP   +  L  I P           R++ ++
Sbjct: 480 LTLTTAAAARHGLPINQDGQRRSAFALLSYPGIDLVRLRDIWPQLCSIDDETAARVETDA 539

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  +    + +E+  +P+  DY  +  LS EL+ KL+ L+P  L QA +IEG
Sbjct: 540 RYAVYLERQTADIDAYRRDEQLTLPETIDYRQIGGLSAELRAKLAFLRPRTLGQAQRIEG 599

Query: 601 MTP 603
           +TP
Sbjct: 600 ITP 602


>gi|126642227|ref|YP_001085211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii ATCC 17978]
          Length = 599

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/596 (45%), Positives = 370/596 (62%), Gaps = 6/596 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+TH   T+G MSCNPAIGG+GK HLVREIDAL G M   AD  GIQFR+LN +
Sbjct: 1   MGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREIDALGGAMALAADKGGIQFRILNSR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AVR  R QADR  Y+ A++  + +Q NLD+ Q        E + +  +V Q      
Sbjct: 61  KGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDLIVEGDTVKGVVTQMGIRFD 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TVVLTTGTFL GVIH+G  K   GR GD PS +L     +     GRLKTGTP R+D 
Sbjct: 121 AKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLRELKLPVGRLKTGTPPRIDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +++ +     Q  D      SFM D  +   Q+ C IT TN +TH II   +  S +Y+G
Sbjct: 181 RSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTNEKTHDIIRGGLDRSPMYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +YPNGIST+LP ++Q + +R+
Sbjct: 241 VIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELYPNGISTSLPFDVQFELVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ AGQINGTTGYEEA AQGL+A
Sbjct: 301 IRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFAGQINGTTGYEEAGAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+AR++ + +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD R
Sbjct: 361 GLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRMFTSRAEYRLMLREDNADQR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST---SISFKQDGKTR 502
           LT IG +LG + + R   + + ++      S L+ L     N        ++     K  
Sbjct: 421 LTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHLWAAPNNPMGKKFVEMTGADLSKEC 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
           +A + L  P+ +   +  +     + S  V E+++I   Y  Y  RQ  +  ++K  E+ 
Sbjct: 481 SAIDLLKRPNINFSQIAELTG--SEVSQQVGEQIEIAVKYEGYINRQHEDVAQLKRLEET 538

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TPAA+ L++I I+KN +
Sbjct: 539 KIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTPAAVQLVMITIRKNNM 594


>gi|192288727|ref|YP_001989332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris TIE-1]
 gi|254811517|sp|B3Q8A7|MNMG_RHOPT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|192282476|gb|ACE98856.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           TIE-1]
          Length = 622

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/589 (52%), Positives = 411/589 (69%), Gaps = 1/589 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADA GIQFR+LN +KGPAVR
Sbjct: 32  LVTHRFATVGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAGGIQFRMLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  I    NL VI+GE      +   +S I + D      + VV+
Sbjct: 92  GPRAQADRKLYAAAMQIAIQGFPNLSVIEGEADALLWQDGRVSGIRLGDGREFAAAAVVI 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IH+G+   PAGR+ ++P+  L +SF    F  GRLKTGTP RLDG+TI W 
Sbjct: 152 TTGTFLRGLIHLGERSWPAGRIDEAPAMGLSSSFEALGFKLGRLKTGTPPRLDGRTIDWS 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T  IT  QIECGITRT   TH +I  N+  S +YSG I+S GP
Sbjct: 212 AVEMQPGDDPAEPFSVLTPAITTPQIECGITRTTPATHEVIRANVHRSPMYSGQIQSTGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FG+R+GHQIFLEPEGL+   VYPNGIST+LPEE+Q   ++TIPGLE+ 
Sbjct: 272 RYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEEVQRAILKTIPGLERT 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            ++RPGYAIEYD+++P+EL PTL+TK++ GLFLAGQINGTTGYEEAAAQGLVAG+N+A  
Sbjct: 332 EMLRPGYAIEYDHVDPRELEPTLQTKRLRGLFLAGQINGTTGYEEAAAQGLVAGLNAALS 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D   F R D Y+GVMIDDL ++G+ EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 392 AGGGDRAVFDRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDKGLA 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+G  R       +   +  ++L +SL +T    +   ++  +DG+ R+A++ LSYP+
Sbjct: 452 LGCVGVERSAFHHDKMAALSDAKALAQSLSITPNEAAKHGLALNRDGQRRSAFDLLSYPE 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                + +I P+  K    +   ++I++ Y  Y  RQ  + +  + +E   +  D DY++
Sbjct: 512 IEWAQVRAIWPELGKVDPAIAVHVEIDAKYHVYLERQTADVEAFRRDESLGL-TDVDYAA 570

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P LSNE + +L   +P  + QA +++G+TPAAL +L  Y+++   K  
Sbjct: 571 VPGLSNEARTRLERHRPHTVGQAGRLDGITPAALGILAAYLRREQRKRK 619


>gi|220907722|ref|YP_002483033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cyanothece sp. PCC 7425]
 gi|219864333|gb|ACL44672.1| glucose inhibited division protein A [Cyanothece sp. PCC 7425]
          Length = 647

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 374/619 (60%), Gaps = 5/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+  S+DVIV+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  
Sbjct: 20  MMQDSFDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTH 79

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +Q NL V 
Sbjct: 80  EVDALGGEIGKMADRTYLQKRLLNDSRGPAVWALRAQTDKREYAAVMKALVENQPNLTVR 139

Query: 121 QGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           +G V       +  +  +         C  V+LTTGTFL G I +GK  + AGR G+ P+
Sbjct: 140 EGMVTDLLLNSHAEVIGVETYFGVTFACQAVILTTGTFLGGRIWVGKKSMAAGRAGEFPA 199

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQI 238
             L  +  +  F+TGRLKTGTPAR+D +T+ + K E Q  D  +  FSF  +  I   Q+
Sbjct: 200 IGLTETLNRLGFETGRLKTGTPARVDKRTVDYSKMEAQPPDNHIRWFSFDPEVWIEREQM 259

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C ITRT   TH++I +N+  S +Y G + + GPRYCPSIEDKIVRF ++  HQIF+EPE
Sbjct: 260 PCYITRTTALTHQLIRDNLHLSPVYGGWVDAKGPRYCPSIEDKIVRFADKESHQIFIEPE 319

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G     +Y  G ST LPE IQ + +R++PGLE   ++RP YA+EYDY+   + +PTL TK
Sbjct: 320 GREIPELYIQGFSTGLPENIQLELLRSLPGLEHCAMLRPAYAVEYDYLPATQCYPTLMTK 379

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI+GLF AGQINGTTGYEEAAAQGLVAGIN+AR++   + I F R  SYIG +IDDL +K
Sbjct: 380 KIAGLFCAGQINGTTGYEEAAAQGLVAGINAARRAQGQEMIVFPREQSYIGTLIDDLCTK 439

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I +RR   F +  +     +  L
Sbjct: 440 DLREPYRMLTSRSEYRLLLRSDNADQRLTPLGREIGLIDDRRWDLFIQKQENIATEKERL 499

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +   L  +     +I+ +       + T  + L  P F   +L        + +    + 
Sbjct: 500 QLTRLKEQEAIGQAIATETGQVIKGSITLADLLRRPGFHYVDLNRYQLGNPRLTEAEQQG 559

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y+ Y  RQ  +  +I  +  R +P D +Y+ +  LS E +EKL+ +KP  + QA
Sbjct: 560 VEIDLKYSGYIQRQQRQIDQIIRQAGRKLPPDLNYAQIGTLSMEAREKLTQVKPLTIGQA 619

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+ PA +N LL+Y++
Sbjct: 620 SRIGGVNPADINALLVYLE 638


>gi|325294201|ref|YP_004280065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium sp. H13-3]
 gi|325062054|gb|ADY65745.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium sp. H13-3]
          Length = 627

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/602 (63%), Positives = 464/602 (77%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DVIVIGGGHAG EAAA AA+ GA TAL+THK  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHQSFDVIVIGGGHAGSEAAAAAARHGAKTALVTHKRETIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFR+LN KKGPAVRGPRTQADR LYR AMQREI + ENL +I+
Sbjct: 61  IDALDGLMGRVADAAGIQFRMLNRKKGPAVRGPRTQADRRLYREAMQREINAIENLSIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+        + + +++M + S I C  VVLT+GTFLRG+IHIG  KIPAGR+G+ PS  
Sbjct: 121 GDAFDIEMADDKVCAVIMANGSRIPCGAVVLTSGTFLRGLIHIGSEKIPAGRVGEKPSLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +     GRLKTGTPARLDG++I W+  ++Q ADE  +PFSFMTD+I N QIECG
Sbjct: 181 LSETLGRLGLAMGRLKTGTPARLDGRSIDWEGVDRQAADEDPVPFSFMTDRIVNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRT    HRII +NI  SA+YSG I+  GPRYCPSIEDKI RFGER+GHQIFLEPEGL+
Sbjct: 241 VTRTTPAGHRIIQDNIHLSAMYSGQIEGVGPRYCPSIEDKITRFGERDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q QFIRTIPGLE+VNII+PGYAIEYDY++P+EL P+LE +KI 
Sbjct: 301 DHTIYPNGISTSLPASVQEQFIRTIPGLEQVNIIQPGYAIEYDYVDPRELKPSLECRKIP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N++  +   D I FSRT+SYIGVMIDDLTSKGV 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLVAGLNASLYAGNADPIHFSRTESYIGVMIDDLTSKGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTPIG   G IG  RQKRFA +I + +  R L+KS+
Sbjct: 421 EPYRMFTSRAEYRLSLRVDNADLRLTPIGQMAGIIGHDRQKRFADFISDMDRGRELMKSI 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++    +   +   QDG+ R+ YE L+YPD +++ L +  P+ R  ++ V E L+IE+S
Sbjct: 481 SISPSQAAKQGLKLNQDGQRRSVYEMLAYPDITMETLTTHWPELRALNTKVAEVLEIEAS 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +  +IK +E R IP DFD+ SL  LSNELK+KL   +P N+ QA++++GM
Sbjct: 541 YAVYMQRQNADIVDIKRDEDRKIPNDFDFQSLSGLSNELKQKLEKARPENIAQAARVDGM 600

Query: 602 TP 603
           TP
Sbjct: 601 TP 602


>gi|134096565|ref|YP_001101640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Herminiimonas arsenicoxydans]
          Length = 601

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/588 (45%), Positives = 366/588 (62%), Gaps = 12/588 (2%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGG+GKGHLVRE+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPSIGGIGKGHLVREVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           + A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IH
Sbjct: 61  KQAIRSRLENQPNLWLFQQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG     AGR GD P+ SL     +     GRLKTGTP R+DG++I +    +Q  D   
Sbjct: 121 IGMNNYSAGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDP 180

Query: 224 IP-FSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           IP FS M    +  +Q+ C IT TN +TH +I   +  S +Y+G I+  GPRYCPSIEDK
Sbjct: 181 IPVFSVMGSVAMHPQQMPCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQIFLEPEGL T+  YPNGIST+LP ++Q   ++++ GLE  +I+RPGYAI
Sbjct: 241 IHRFAGKESHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDY +P+ L  TLETK I GLF AGQINGTTGYEEAAAQG++AGIN+A +  + D    
Sbjct: 301 EYDYFDPRGLKATLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTP 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++Y+GV++DDL ++GVLEPYRMFTSRAEYR+SLR DNAD RLT +G +LGC+G+ + 
Sbjct: 361 RRDEAYLGVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQW 420

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL 518
             F    +        L+S  ++ +      +  +  K   +     + L  P+ + + L
Sbjct: 421 ALFETKREAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVTYETL 480

Query: 519 FSI-CPDARKF------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
            S+   D +           V E+++I+  YA Y  RQ  E +     E   +P +FDY 
Sbjct: 481 MSLKGMDGQDLGGPGVAEPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYM 540

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++  LS E+++KL+  +P  L QAS+I G+TPAA++L+L+++KK   K
Sbjct: 541 AVKGLSIEVRQKLTKQRPETLGQASRISGVTPAAISLMLVHLKKGGFK 588


>gi|239617771|ref|YP_002941093.1| glucose inhibited division protein A [Kosmotoga olearia TBF 19.5.1]
 gi|239506602|gb|ACR80089.1| glucose inhibited division protein A [Kosmotoga olearia TBF 19.5.1]
          Length = 634

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/618 (41%), Positives = 369/618 (59%), Gaps = 7/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++D++VIG GHAG EA   AAK+G  T ++     T+G   CNPA+GG  KG + RE+
Sbjct: 7   DYNFDIVVIGAGHAGIEAGLAAAKMGLKTLVLAINLDTVGWAPCNPAVGGPAKGIVAREV 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G + +  DA  I  R+LN  KGPAVR  R Q D+  Y + M+R + SQENL +  G
Sbjct: 67  DALGGQIAKTTDATMINVRMLNTSKGPAVRALRAQIDKHEYSMEMKRILESQENLFIRSG 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             +    E   ++ +V     + RC   V+T+GTFLRG I +G+    AGR+G+ P+ +L
Sbjct: 127 IASEILVENGKVTGVVTHFGVVYRCRAAVVTSGTFLRGKIFVGQKVFEAGRLGEFPAKAL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECG 241
             S     F   R KTGTPAR+ GK+I + K E+Q   +  + FS F   ++  +   C 
Sbjct: 187 SQSLETLGFTLSRFKTGTPARIQGKSIDFSKMERQDTSDEPLAFSYFDEPRVLPKDYPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +T TN  TH +I  ++K S +Y     I+S GPRYCPSIEDK+V+F  +  HQ+F+EPEG
Sbjct: 247 LTHTNPSTHAVIRRDLKFSPLYGDVKLIQSIGPRYCPSIEDKVVKFSSKESHQVFVEPEG 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NTD  Y NG+ST+LP E Q + IRT+PGLE   I+RP YA+EYDY+ P +L+PTLE+K 
Sbjct: 307 KNTDEYYLNGLSTSLPFETQVEMIRTVPGLENAVIVRPAYAVEYDYVTPDQLYPTLESKL 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ+ GT+GYEEAA  G+VAGIN+A K   ++     R++SYIGVMIDDL +KG
Sbjct: 367 VENLYFAGQVIGTSGYEEAAGLGIVAGINAAAKLLGMEQFVPKRSESYIGVMIDDLVTKG 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ +R DNA  RL+  G K G I +   ++     ++       L 
Sbjct: 427 VDEPYRLLTSRAEYRLLIRHDNAHIRLSKYGYKYGLIPKWFYEKVLDLERQIEGEIERLN 486

Query: 480 SLVLTS-KNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++V+     L++  ++       ++    + L  P  S + L    P+  +   L+ E++
Sbjct: 487 NVVVKPLSTLNNKLVAAGTSPIYQSTRLSQLLKRPQVSYEILKEFDPEPIE-DLLLREQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  R   E K  +  E  +IP   +Y  +P LS E +EKL  L+P ++ QA 
Sbjct: 546 EIQLKYEGYILRMEQELKRFERLEMEIIPPKVNYDEVPNLSTESREKLKKLRPRSIGQAM 605

Query: 597 KIEGMTPAALNLLLIYIK 614
           +I G+TPA +  L +Y+K
Sbjct: 606 RIPGITPADIMNLSVYLK 623


>gi|81170573|sp|Q6ND15|MNMG_RHOPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 622

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/589 (52%), Positives = 411/589 (69%), Gaps = 1/589 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADA GIQFR+LN +KGPAVR
Sbjct: 32  LVTHRFATVGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAGGIQFRMLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  I    NL VI+GE      +   +S I + D      + VV+
Sbjct: 92  GPRAQADRKLYAAAMQTAIQGFPNLSVIEGEADALLWQDGRVSGIRLGDGREFAAAAVVI 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IH+G+   PAGR+ ++P+  L +SF    F  GRLKTGTP RLDG+TI W 
Sbjct: 152 TTGTFLRGLIHLGERSWPAGRIDEAPAMGLSSSFEALGFKLGRLKTGTPPRLDGRTIDWS 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T  IT  QIECGITRT   TH +I  N+  S +YSG I+S GP
Sbjct: 212 AVEMQPGDDPAEPFSVLTPAITTPQIECGITRTTTATHEVIRANVHRSPMYSGQIQSTGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FG+R+GHQIFLEPEGL+   VYPNGIST+LPEE+Q   ++TIPGLE+ 
Sbjct: 272 RYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEEVQRAILKTIPGLERT 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            ++RPGYAIEYD+++P+EL PTL+TK++ GLFLAGQINGTTGYEEAAAQGLVAG+N+   
Sbjct: 332 EMLRPGYAIEYDHVDPRELEPTLQTKRLRGLFLAGQINGTTGYEEAAAQGLVAGLNAGLS 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D + F R D Y+GVMIDDL ++G+ EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 392 AGGGDLVVFDRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDKGLA 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+G  R       +   +  ++L +SL +T    +   ++  +DG+ R+A++ LSYP+
Sbjct: 452 LGCVGVERSAFHHDKMSALSDAKALAQSLSITPNEAAKHGLALNRDGQRRSAFDLLSYPE 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                + +I P+  K    +   ++I++ Y  Y  RQ  + +  + +E   +  D DY++
Sbjct: 512 IEWAQVRAIWPELGKVDPAIAVHVEIDAKYHVYLERQTADVEAFRRDESLGL-TDVDYAA 570

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P LSNE + +L   +P  + QA +++G+TPAAL +L  Y+++   K  
Sbjct: 571 VPGLSNEARTRLERHRPHTVGQAGRLDGITPAALGILAAYLRREQRKRK 619


>gi|39933371|ref|NP_945647.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodopseudomonas palustris CGA009]
 gi|39652996|emb|CAE25738.1| putative glucose inhibited division protein A (GidA)
           [Rhodopseudomonas palustris CGA009]
          Length = 646

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/589 (52%), Positives = 411/589 (69%), Gaps = 1/589 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADA GIQFR+LN +KGPAVR
Sbjct: 56  LVTHRFATVGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAGGIQFRMLNRRKGPAVR 115

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  I    NL VI+GE      +   +S I + D      + VV+
Sbjct: 116 GPRAQADRKLYAAAMQTAIQGFPNLSVIEGEADALLWQDGRVSGIRLGDGREFAAAAVVI 175

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IH+G+   PAGR+ ++P+  L +SF    F  GRLKTGTP RLDG+TI W 
Sbjct: 176 TTGTFLRGLIHLGERSWPAGRIDEAPAMGLSSSFEALGFKLGRLKTGTPPRLDGRTIDWS 235

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T  IT  QIECGITRT   TH +I  N+  S +YSG I+S GP
Sbjct: 236 AVEMQPGDDPAEPFSVLTPAITTPQIECGITRTTTATHEVIRANVHRSPMYSGQIQSTGP 295

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FG+R+GHQIFLEPEGL+   VYPNGIST+LPEE+Q   ++TIPGLE+ 
Sbjct: 296 RYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEEVQRAILKTIPGLERT 355

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            ++RPGYAIEYD+++P+EL PTL+TK++ GLFLAGQINGTTGYEEAAAQGLVAG+N+   
Sbjct: 356 EMLRPGYAIEYDHVDPRELEPTLQTKRLRGLFLAGQINGTTGYEEAAAQGLVAGLNAGLS 415

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D + F R D Y+GVMIDDL ++G+ EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 416 AGGGDLVVFDRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDKGLA 475

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+G  R       +   +  ++L +SL +T    +   ++  +DG+ R+A++ LSYP+
Sbjct: 476 LGCVGVERSAFHHDKMSALSDAKALAQSLSITPNEAAKHGLALNRDGQRRSAFDLLSYPE 535

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                + +I P+  K    +   ++I++ Y  Y  RQ  + +  + +E   +  D DY++
Sbjct: 536 IEWAQVRAIWPELGKVDPAIAVHVEIDAKYHVYLERQTADVEAFRRDESLGL-TDVDYAA 594

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P LSNE + +L   +P  + QA +++G+TPAAL +L  Y+++   K  
Sbjct: 595 VPGLSNEARTRLERHRPHTVGQAGRLDGITPAALGILAAYLRREQRKRK 643


>gi|319940689|ref|ZP_08015031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805840|gb|EFW02607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sutterella wadsworthensis 3_1_45B]
          Length = 647

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/626 (45%), Positives = 391/626 (62%), Gaps = 12/626 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DVIVIG GHAG EAA  +A++G ST L+TH   T+G +SCNP+IGG+GKGHLV+E+D
Sbjct: 5   ENFDVIVIGCGHAGAEAALASARMGCSTLLVTHNLDTVGQLSCNPSIGGIGKGHLVKELD 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+V D +GIQFR+LN  KG AV   R Q DR+LYR AM++ I SQENL V Q  
Sbjct: 65  ALGGTMGQVTDESGIQFRILNRSKGAAVHASRAQIDRQLYRRAMRKRIESQENLKVFQMA 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E      +V           VVL+ GTFL G++HIG     AGRMGD  S  L 
Sbjct: 125 VDDLLVENGCARGVVTNTGIRFHSKAVVLSAGTFLNGLVHIGLEHFTAGRMGDPASVRLG 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNR-QIECG 241
               +     GRLKTGTP R+D +TI + + E Q+ D    P FS M    T+  Q+ C 
Sbjct: 185 ERLKELGLPQGRLKTGTPCRIDARTIDFSRCEIQWGDLNPTPSFSLMQPTATHPEQMPCW 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T  E H +I+ N+  S +Y+G I+  GPRYCPSIEDK+ RF E++ HQ+FLEPEG++
Sbjct: 245 ITHTTREMHELILANLDRSPMYAGVIQGIGPRYCPSIEDKVKRFAEKDSHQVFLEPEGIH 304

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               YPNGIST+LP ++Q + +  +PGLEK ++ RPGYAIEYDY +P+EL  + E+K + 
Sbjct: 305 VREYYPNGISTSLPFDVQLKMVHMMPGLEKAHLTRPGYAIEYDYYDPRELKRSFESKVME 364

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AG N+A  +   D     R ++Y+GVM DDLT+KGV 
Sbjct: 365 GLFCAGQINGTTGYEEAAAQGLLAGANAALYARGDDAWTPRRDEAYLGVMADDLTTKGVT 424

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLTPIG KLG + + R + F +  +        L+  
Sbjct: 425 EPYRMFTSRAEYRLNLREDNADTRLTPIGRKLGLVDDARWEFFCRKTERIERAMEALRET 484

Query: 482 VLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLF-------SICPDARKFSSL 531
            +  K +       +      +  +    L+ P+ ++++L        S+  D  + +  
Sbjct: 485 WVNPKLIERAEAERVLGVAIEREYSLRSLLARPNVTMESLMTLKRTDGSLAHDFSELNKE 544

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
              R+++E  YA Y  RQ  E ++    E  +IP++ DY  +  LS E+++KL   +P  
Sbjct: 545 EQSRVEVEVKYAGYIDRQKDEIQKTLANETLVIPREMDYDQVMGLSFEVRQKLKAAQPET 604

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNT 617
           + QAS+I G+TPAA+ LLL+++K+  
Sbjct: 605 VGQASRISGVTPAAVALLLVHLKRRH 630


>gi|154250326|ref|YP_001411151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fervidobacterium nodosum Rt17-B1]
 gi|205831510|sp|A7HNL1|MNMG_FERNB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|154154262|gb|ABS61494.1| glucose inhibited division protein A [Fervidobacterium nodosum
           Rt17-B1]
          Length = 626

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/620 (43%), Positives = 368/620 (59%), Gaps = 9/620 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  ++VIV+GGGHAG EAA  +A++G  T LIT     IG  SCNPAIGG  KG +VREI
Sbjct: 10  DYRFEVIVVGGGHAGIEAAFASARMGFKTLLITGNPDNIGWASCNPAIGGSAKGIVVREI 69

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LN  KGPAV+  R Q D+  Y   M+R++  QENL +  G
Sbjct: 70  DALGGEMAKTTDETMINVRMLNTSKGPAVQALRAQIDKYSYSRTMKRKLEEQENLLIRYG 129

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +V           V+LTTGTFLRG I IG+  + AGRMGD  +  L
Sbjct: 130 IVEEILVENGKVKGVVDSFGIDYMAKAVILTTGTFLRGKIFIGRETMEAGRMGDFSARGL 189

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
            NS +K  F  GR KTGTPAR+  K+I + K  +Q  D++   FS   + K+  +   C 
Sbjct: 190 TNSLIKLGFTVGRFKTGTPARVLKKSIDFSKMVRQDTDDKPWAFSHFNEPKVLEKDYPCW 249

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +T T  E+H+II + +  S +Y     I++ GPRYCPSIEDK+V+F ER  HQIF+EPEG
Sbjct: 250 LTHTTPESHKIIRDYLIFSPLYGEVKLIQAKGPRYCPSIEDKVVKF-ERESHQIFVEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T   Y NG+ST+LP   Q + +RTIPGLE V I+RP YA+EYDYI+P +L+PTLE+K 
Sbjct: 309 KDTQEYYLNGLSTSLPYAAQIKMLRTIPGLENVKIVRPAYAVEYDYIDPTQLYPTLESKI 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGT+GYEEAAAQGL+AGIN+  K      I   R++SYIGVMIDDL +KG
Sbjct: 369 IENLYFAGQINGTSGYEEAAAQGLIAGINAGLKLRGEKPIVLKRSESYIGVMIDDLVTKG 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ +SRAEYR+ LR DNA  RL   G ++G I      +         +    L+
Sbjct: 429 VDEPYRLLSSRAEYRLLLRHDNAHLRLAKYGYQVGLIPRWFYDKIINLENNIKYHIERLE 488

Query: 480 SLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ +    S N    S+      +     + L  P+ S   L  + P+     + VIE++
Sbjct: 489 NVKVPASSSVNELLQSLGTTPLTEGTRLAKLLRRPEVSYNALKHLDPEPIS-DTDVIEQI 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y    + + +  +  E   I  +  +S +P LS E +EKL  +KP ++ QAS
Sbjct: 548 EIQLKYEGYINSMLEQVQIFEEYENLPI-VNVIFSEVPNLSTEAREKLEKIKPLSIGQAS 606

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+TPA +  LL YIKK 
Sbjct: 607 RIPGVTPADILALLTYIKKK 626


>gi|157964122|ref|YP_001498946.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia massiliae MTU5]
 gi|166989739|sp|A8F0G3|MNMG_RICM5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157843898|gb|ABV84399.1| Glucose-inhibited division protein A [Rickettsia massiliae MTU5]
          Length = 622

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 434/611 (71%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|87126017|gb|ABD20531.1| glucose-inhibited division protein A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87204224|gb|ABD32034.1| glucose inhibited division protein A, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 594

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/593 (44%), Positives = 374/593 (63%), Gaps = 7/593 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++T     I  M CNP++GG  KG +VREIDAL G M +  D   IQ R+LN  KGPAVR
Sbjct: 1   MLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QAD+ LY+  M+R I  +ENL ++QG V     E N +  +     +      V++
Sbjct: 61  ALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVII 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG I +G +K  +G     PS +L ++  +  FD  R KTGTP R++ KTI + 
Sbjct: 121 TTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYS 180

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           KTE Q  D+    FSF T +    Q+ C +T TN ETH++I +N+  SA+YSG IK  GP
Sbjct: 181 KTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGP 240

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK VRF ++  HQ+FLEPEG NT+ VY  G+ST+LPE +Q Q + TIPGLEK 
Sbjct: 241 RYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKA 300

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +++R GYAIEYD I P +L+PTLETK I  L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 301 DMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGK 360

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
                    SR+D+YIGV+IDDL +KG  EPYR+ TSRAEYR+ LR DNAD RLT +G +
Sbjct: 361 VLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYE 420

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSSTSISFKQDGKTRTAYEF 507
           LG I E R  RF +  Q+ +     L  + +         +     S  +DG    A + 
Sbjct: 421 LGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGI--LAIDL 478

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   +  +  +  + ++ V E+++I++ Y  Y  + + + +++K  E++ IP+D
Sbjct: 479 LRRPEMTYDIILELLEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPED 538

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            DYS + +L+ E +EKLS +KP N+ QAS+I G+ PA +++LLIY+++  ++ 
Sbjct: 539 LDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQR 591


>gi|189220413|ref|YP_001941053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylacidiphilum infernorum V4]
 gi|189187271|gb|ACD84456.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme GidA [Methylacidiphilum infernorum
           V4]
          Length = 623

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/633 (45%), Positives = 386/633 (60%), Gaps = 38/633 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EAA   A++G  T L+T    TIG MSCNP+IGG+GKGHLVREID
Sbjct: 9   KKYDVIVVGGGHAGVEAALACARMGCQTLLLTMNLDTIGQMSCNPSIGGIGKGHLVREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG   D  GIQFR+LN+KKG +V+ PR Q D++ Y+  ++       NLD+ Q  
Sbjct: 69  ALGGEMGINTDLTGIQFRMLNLKKGYSVQAPRAQCDKKAYQFRLKAVCERTSNLDLFQAS 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    +++ I  I+ +   +I  S V++TTGTFLRG++H+G+ K   GRMG+S  +SL 
Sbjct: 129 VSDLIVKEDKIKGIITELGIVIHASAVIVTTGTFLRGLLHVGRNKKTGGRMGESS-SSLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-----MTDK------ 232
           +   K+ F+ GRLKTGTP R++GKTI + K   Q  D     FSF      TDK      
Sbjct: 188 DVLRKYGFEVGRLKTGTPPRVNGKTIDFSKCMMQPGDTPPPHFSFALSDLDTDKEGMYTL 247

Query: 233 -------ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                      Q+ C IT TN +TH II EN+  S +Y G+I+  GPRYCPSIEDKIVRF
Sbjct: 248 NRWKEGMFHVEQLACAITYTNAKTHAIIRENLHTSPLYCGEIQGVGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            ++  HQIFLEPEG +T+  Y NG ST+LP E+Q QFI +I GLE   IIRPGYA+EYDY
Sbjct: 308 ADKERHQIFLEPEGRHTEEYYVNGCSTSLPFEVQDQFIHSIEGLEHCQIIRPGYAVEYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
               +++PT+ETK I GLF AGQINGTTGYEEAA+QGL+AGIN+ARK      +   R  
Sbjct: 368 CPATQIYPTMETKTIEGLFFAGQINGTTGYEEAASQGLIAGINAARKIQNNPPLILGRDQ 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +YIGV+IDDLT+K + EPYR+FTSRAE+R+ LR DNAD RLT IG  LG   + R  R  
Sbjct: 428 AYIGVLIDDLTTKPIREPYRIFTSRAEHRLVLRQDNADLRLTEIGYSLGLASKARLMRVQ 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
           +  +        ++   L         +S ++          L  P++S  +L     + 
Sbjct: 488 EKKRLIEETFQKIRQYRLN-------GLSLEE---------MLKRPEYSWSHL---PLEF 528

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     V   ++ E  YA Y  R+     + +  E+ +IP + DY  +P L  E +EKLS
Sbjct: 529 QGVPKDVALHIECEIKYAGYIARERELILKRQKLEESIIPANIDYEKIPGLKQEAREKLS 588

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            +KP    QAS+I G+ P  + +++I+ KKN  
Sbjct: 589 RMKPLTFGQASRIPGVNPTDVAIIMIWAKKNGA 621


>gi|310830136|ref|YP_003962493.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium limosum KIST612]
 gi|308741870|gb|ADO39530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium limosum KIST612]
          Length = 633

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 395/619 (63%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIG GHAG EAA  AA+LG  T L+T    ++  M CNP+IGG GKGHLVREIDA
Sbjct: 7   SFDVVVIGAGHAGAEAALAAARLGFETLLLTINLDSVAMMPCNPSIGGTGKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+  DA  IQ R+LN  KGPAV   R QAD++ Y+  M+  I +QE+L + Q E 
Sbjct: 67  LGGEMGKNIDATMIQCRMLNTGKGPAVHSLRAQADKKAYQFRMKEVIENQEHLLLKQQEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ + +Q  ++ +C + V+ TGT+L+G I IG+++   G  G  P+  L +
Sbjct: 127 TRIIVEDGRITGVEVQTGAVYQCKSCVICTGTYLKGKIFIGEVQYDGGPNGLFPAMQLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S ++   +  R KTGTPAR+D KT+ + K + Q  DE+++PFSF T+KI   Q+ C +T 
Sbjct: 187 SLLEQGIELQRFKTGTPARVDAKTVDYSKMQVQNGDEKIVPFSFETEKIEIDQVPCYLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETHRII EN++ S +Y+GD+   GPRYCPSIE K++RF ++  HQIF+EPEGL+T+ 
Sbjct: 247 TNEETHRIINENMERSPLYTGDVVGVGPRYCPSIETKVMRFADKPQHQIFMEPEGLHTNE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+S+ LPE++Q    RT+PG+EKV  +R  YAIEYD I P  L  +LE+K I GLF
Sbjct: 307 VYVQGMSSCLPEDVQIALYRTVPGMEKVEFMRSAYAIEYDCIYPTRLKASLESKDIKGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
             GQINGT+GYEEAAAQGL+AG+N+ R     + +   R+ +YIGV+IDD+ +KG  EPY
Sbjct: 367 FGGQINGTSGYEEAAAQGLIAGVNAVRCIEGKEPVILDRSQAYIGVLIDDIITKGTEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLTPIG ++G I + R   F          +  L  L++ 
Sbjct: 427 RMMTSRSEYRLLLRQDNADLRLTPIGHEIGLISDERYTAFLHKKAAVEQEKERLTRLMIK 486

Query: 485 S---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                N     I         T  E +  P+    N  ++ P+    S  V E+++++  
Sbjct: 487 PGEHTNKVLEGIGSSPIKSGVTLAELIRRPEVGYANTAALDPERPVLSDAVCEQVEVQIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q+ + ++ K  EK+LIP++ DY+++  L  E  EKL+ ++P ++ QAS+I G+
Sbjct: 547 YDGYIKKQVAQVEQFKKMEKKLIPENIDYTAIGGLRLEAVEKLTDIQPKSMGQASRISGV 606

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA L++LLIY+++N  + 
Sbjct: 607 SPADLSVLLIYLEQNRRQA 625


>gi|284040354|ref|YP_003390284.1| glucose inhibited division protein A [Spirosoma linguale DSM 74]
 gi|283819647|gb|ADB41485.1| glucose inhibited division protein A [Spirosoma linguale DSM 74]
          Length = 620

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/620 (41%), Positives = 357/620 (57%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIV+G GHAGCEAA  AA +G+   LIT    TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MYSSYDVIVVGAGHAGCEAANAAATMGSKVLLITMNMQTIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL GL G ++D + IQFR+LN  KGPA+  PR Q+DR ++    ++ +    N+D  Q
Sbjct: 61  VDALGGLSGIISDKSMIQFRMLNRSKGPAMWSPRCQSDRNVFAWEWRKALEENHNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V+    + N +  +            VVLT GTFL G + IG+     GR  +  +  
Sbjct: 121 DTVSEVIVKDNRVKGVKTSLGVEFSAKAVVLTNGTFLNGQMFIGEKVFGGGRTAERSATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L    +   F+ GR+KTGTP R+DG+++ +   E+Q  DE    FS+       +Q  C 
Sbjct: 181 LTEQLVHLGFEAGRMKTGTPPRVDGRSLNYALMEEQLGDENPGKFSYTNTPALTKQRSCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN   H  +      S +++G IK  GPRYCPS+EDKI RF +++ HQIF+EPEG +
Sbjct: 241 ITYTNQAVHDELKTGFDKSPMFTGRIKGLGPRYCPSVEDKINRFADKDRHQIFVEPEGWD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NG ST+LPE +Q+  +R I G E V + RPGYA+EYD+  P +L PTLET+ + 
Sbjct: 301 TVEVYVNGFSTSLPETVQYNALRKIQGFENVRMFRPGYAVEYDFFPPTQLKPTLETQLVQ 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA QGL+AGIN+ R S++       R++ YIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAACQGLMAGINAHRNSHEEAEFTIKRSEGYIGVLIDDLITKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR  LR DNAD RLT  G  +G   + R +      +    L   +++ 
Sbjct: 421 EPYRMFTSRAEYRTLLRQDNADLRLTEKGYAIGLASQERYETMLAKREGIAKLTETIRAT 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS----SLVIER 535
            +  + +++   S       +  + Y  L  P+    ++  I               IE+
Sbjct: 481 KVKPEEINTFLESKGSAPLREKGSLYTLLKRPEIDQSDVKGILSSLPDMPNGVGEETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             IE  Y  Y  R+   A ++   E   I   FDY  L ALS E KEKL  L+P  + QA
Sbjct: 541 TVIEIKYEDYLNREKQNADKLDKWENLSINPTFDYDRLKALSFEGKEKLKRLRPSTIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++LL+Y+ +
Sbjct: 601 SRISGVSPSDVSILLVYMGR 620


>gi|315636706|ref|ZP_07891936.1| glucose inhibited division protein A [Arcobacter butzleri JV22]
 gi|315479021|gb|EFU69724.1| glucose inhibited division protein A [Arcobacter butzleri JV22]
          Length = 625

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 368/623 (59%), Gaps = 10/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVVGGGHAGIEASLASARMGKKTLLITMLVEQIGAASCNPAIGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D  GIQFR+LN  KG AV+G R Q D + YR  M++   +  NL+V Q EV
Sbjct: 62  IGGEMGLCTDNTGIQFRILNASKGAAVQGSRAQIDMDKYREYMRKVCHNTPNLEVYQDEV 121

Query: 125 AGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                +  N +  +  +         VVLTTGTF+RG++HIG+ K  AGR  + PS +L 
Sbjct: 122 TALLVKNGNEVCGVKTKLTEEFIAKKVVLTTGTFMRGLVHIGENKYEAGRAWELPSTTLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
               +     GRLKTGTP+RLD  +I +   +    D    PFSF T+K      Q  C 
Sbjct: 182 TQLKELGLRVGRLKTGTPSRLDANSIDFSVMDMHGGDVNPAPFSFRTNKSDFAPTQFPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER+ HQ+FLEP+   
Sbjct: 242 ITYTNEKTHEIISSNFYRAPLFTGQIEGLGPRYCPSIEDKVNRFAERDRHQLFLEPQTAM 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+S++LP ++Q   I ++ GLE   IIR GYAIEYDY++P EL  TLETKKI 
Sbjct: 302 CTEYYINGMSSSLPIDVQKAMIHSVKGLENAKIIRYGYAIEYDYVDPTELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQIN TTGYEEAAAQGL+AGIN+    ++ +     R ++YIGV+IDDL +KG  
Sbjct: 362 NLYHAGQINATTGYEEAAAQGLIAGINACLSIDEKEPFILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR +NAD RL+  G + G I +   K+     +        + + 
Sbjct: 422 EPYRMFTSRAEYRLLLREENADLRLSQYGYEFGLIDDETIKKVENKRKTIEEAIEFMANE 481

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +TSK  +     SI  ++        + +      I     + P      + + E++ I
Sbjct: 482 WMTSKKETLELLESIGEEKINDRVLLVDLIGRNSIDIFKFEKLVPSFAHLDNYLKEQIII 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  + +++K   K  IP+ F Y  LP LSNE+ EKL   +P  +  AS I
Sbjct: 542 EAKYYRYIQKQQKQIEKMKKMLKATIPESFSYKGLPGLSNEVVEKLEKHRPPTIFNASLI 601

Query: 599 EGMTPAALNLLL----IYIKKNT 617
            G+TPAAL+++     I++K N 
Sbjct: 602 SGVTPAALDIIHLNLNIFVKSNK 624


>gi|332665150|ref|YP_004447938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333964|gb|AEE51065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 621

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/618 (41%), Positives = 371/618 (60%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA  AA LG+   L+T    TI  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   EYDVIVVGAGHAGCEAAVAAANLGSKVCLVTMNMQTIAQMSCNPAMGGVAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G  G V D   +QFR+LN  KGPA+  PR Q+DR L+    +  +    N+D  Q  V
Sbjct: 64  LGGYSGIVTDHTMVQFRMLNRSKGPAMWSPRAQSDRMLFARKWRNMLEEHPNVDFWQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G      ++  +V      I    VVLT GTFL G+IHIG+ ++  GR G+S +  +  
Sbjct: 124 KGLVIRGGVVRGVVTSMGLEIPGKAVVLTNGTFLNGIIHIGEKQLGGGRAGESAAKGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             ++  F+ GR+KTGTP R+DG+T+ +D  E Q  DE    FS+       +Q+ C +T 
Sbjct: 184 QLVELGFEAGRMKTGTPPRVDGRTLNYDAMEVQPGDENPGKFSYTDTPPITKQLPCHVTY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ + H  +      S +++G I+  GPRYCPSIEDKI RF +++ HQ+F+EPEG +T  
Sbjct: 244 TSTQVHETLKTGFDRSPMFNGRIQGLGPRYCPSIEDKINRFADKDRHQLFVEPEGWDTCE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LPE++Q++ +R IPG E V + RPGYAIEYDY  P +L  TLET+ +  LF
Sbjct: 304 IYVNGFSSSLPEDVQYKALRLIPGFENVKMFRPGYAIEYDYFPPTQLEMTLETRLVKNLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AG N+    N+ + +   R++ YIGV+IDDL +KG  EPY
Sbjct: 364 FAGQINGTTGYEEAACQGMMAGFNAHLAINEQEPLIIKRSEGYIGVLIDDLVNKGTQEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSLLKSLVL 483
           RMFTSRAEYRI LR DNAD RLTP+  +LG  G E R +R          +   L+   +
Sbjct: 424 RMFTSRAEYRILLRQDNADLRLTPLAHQLGVRGMEERMERVQVKEASAKAIERFLEEYSI 483

Query: 484 TSKNLSSTSISFKQDGKTR--TAYEFLSYPDFSIQNLFSICPDARKF----SSLVIERLQ 537
             + ++    S +     +       L  P+ ++ +L  + PD  +F    +   +E  +
Sbjct: 484 APEQINQYLESKESSATRQKVKLSTILLRPNINLDDLREVVPDLHQFLQAHTQECVELAE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++     ++   E+  +    DY +LP+LS E +EKL+ ++P  + QAS+
Sbjct: 544 INMKYEGYIRKEQELVNKMNRLEEVKLWDTLDYHALPSLSKEAREKLTRMRPRTIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G++P+ +++LL+++ +
Sbjct: 604 ISGISPSDISVLLVHMGR 621


>gi|325295306|ref|YP_004281820.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065754|gb|ADY73761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 634

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/635 (46%), Positives = 393/635 (61%), Gaps = 13/635 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIV+G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KG +VR
Sbjct: 1   MWDGIYDVIVVGAGHAGCEAALAAARMGCKTALFTVNVDKIAEMSCNPAIGGVAKGTVVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  D  GIQFR+LN +KGPAVR PR QAD+  YR  M++ I +  NL+++
Sbjct: 61  EIDALGGEMAKNIDETGIQFRILNRRKGPAVRAPRAQADKYAYRDRMRKIIENTPNLEIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +V   N+      VV+T GTFL+G I IG  +   GRM +  +N
Sbjct: 121 QQIVDDIIVEDGKVKGVVTHINARYGAKAVVVTAGTFLKGKIFIGFKEFEGGRMWEPAAN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L N +++  F   RLKTGTP RLDG TI + K E+Q  DE    FS+ T+     QI C
Sbjct: 181 KLSNFYIRHGFKVARLKTGTPVRLDGTTIDFSKMERQDGDEPPPFFSYWTEPKEIEQIPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYS--GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            +T T  ETHRII EN+  S +Y     I   G RYCPSIEDKIV+F ++  H +F+EPE
Sbjct: 241 WLTYTTPETHRIIKENLHRSPMYGECKLISGVGVRYCPSIEDKIVKFPDKERHHVFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT   YPNG ST+LP ++Q + IR+IPGLE   IIRP YAIEYD+++P  L+PTLETK
Sbjct: 301 GRNTVEFYPNGTSTSLPFDVQEKIIRSIPGLENAKIIRPAYAIEYDFVDPTHLYPTLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLTS 417
            I GLF AGQINGTTGYEEAA QG+VAGIN+A  + NK +     R ++YIGVMIDDL +
Sbjct: 361 IIKGLFNAGQINGTTGYEEAAGQGIVAGINAALYALNKDERFILGRDEAYIGVMIDDLVN 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYR+FTSRAEYR+ +R DNAD RL   G + G +   + +R  +  +        
Sbjct: 421 KGVREPYRLFTSRAEYRLLIRYDNADYRLAKYGYRFGLLTREQYERVKRKYETIKVFIEK 480

Query: 478 LKSLVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-----FSICPDARKFSS 530
           LK + +  +  N            +++T YE L  P+  +  +     F +  + RK   
Sbjct: 481 LKEVKVKPEVINPVLEKAGSTPLKESKTVYEVLKRPEVKLYEILKVISFKLDIEDRKLLE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E ++IE  Y  Y  RQ+ + K+ +  E   IP+DFDYS +P +S E K+KL  +KP 
Sbjct: 541 EILEEVEIEVKYEGYIKRQLEDVKKFRKLENVKIPQDFDYSIVP-ISTEEKQKLKEMKPL 599

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
            L QA+++EG+ PA++ +L IYI+K   K  E+ L
Sbjct: 600 TLGQAARLEGIRPASIPILAIYIEK--WKRGEVKL 632


>gi|313885557|ref|ZP_07819307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619287|gb|EFR30726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 638

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/620 (40%), Positives = 361/620 (58%), Gaps = 11/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA++   T L+T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   NYDVIVVGAGHAGSEAALAAARMDCKTLLLTISLEMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAV+  R QAD+  Y  +M+  I   + L++ QG V
Sbjct: 68  LGGEMGRNIDRTSIQTRMLNTSKGPAVQALRAQADKAAYARSMKAVIEDTDGLELHQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +     ++     VVLT GT  RG I IG+LK  +G     PS  L  
Sbjct: 128 EELIVEDGQVKGVRTNTGAIYHSQAVVLTAGTSSRGKIIIGELKYSSGPNNTLPSIKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           + ++   +  R KTGTP R+   +I +D+TE Q  D     FS+ T  +        C +
Sbjct: 188 NLLELGIELARFKTGTPPRIHYDSIDFDQTEIQPGDIEPNHFSYETPDEAFNPESTPCWL 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  + ++SG ++  G RYCPSIEDKIVRF ++  HQIF+EPEGL T
Sbjct: 248 THTNEKTHEIIRKNLHRAPMFSGMVEGVGARYCPSIEDKIVRFSDKPRHQIFIEPEGLET 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y  G+ST++PEEIQ   + ++ G+E+  ++RPGYAIEYD + P +L   LE KK+ G
Sbjct: 308 KEMYVQGLSTSMPEEIQLDMLHSVKGMERARLMRPGYAIEYDVVIPHQLNLNLEVKKLPG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+NGT+GYEEAA QG++AGIN+A K    D     R ++YIGVMIDDL +KG  E
Sbjct: 368 LFTAGQMNGTSGYEEAAGQGIMAGINAALKVQGKDPFILRRDEAYIGVMIDDLVTKGTTE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAE+R+ LR DNAD RLT  G ++G IG+ R   +             L+ L 
Sbjct: 428 PYRLLTSRAEFRLLLRHDNADLRLTERGRQIGLIGDERYAAYQAKFNLVQDEIKRLEGLR 487

Query: 483 LTSKNL------SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER 535
           LT               +  +DG    A E L  P+   ++L ++ PD  +       ++
Sbjct: 488 LTPNTPGLSEYFDRVGSAPLKDGI--LASELLKRPEIKYRDLVALLPDRDQVLDRQEGQQ 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  YA Y  + + +   +   E + IP D D+ ++  L+NE +++L ++ P  L QA
Sbjct: 546 VEIQIKYAGYIKKALRKVDRMAGMESKHIPHDIDWDAIGNLANEARDRLKLINPSTLGQA 605

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S++ G+ PA + +L +Y+++
Sbjct: 606 SRVSGVNPADIAILSVYLQQ 625


>gi|167770826|ref|ZP_02442879.1| hypothetical protein ANACOL_02179 [Anaerotruncus colihominis DSM
           17241]
 gi|167666866|gb|EDS10996.1| hypothetical protein ANACOL_02179 [Anaerotruncus colihominis DSM
           17241]
          Length = 642

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 377/622 (60%), Gaps = 4/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+ VIGGGHAG EAA  AA+LGA T L T     IG+M CNP+IGG  KGHLVREIDA
Sbjct: 14  TYDIAVIGGGHAGIEAALAAARLGAHTVLFTMSLDAIGNMPCNPSIGGTAKGHLVREIDA 73

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  + +Q+ LDVIQ E+
Sbjct: 74  LGGEMGRAADATMLQSRMLNRGKGPAVHSLRAQTDRKDYHRYMKYAVENQDRLDVIQAEI 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    + S+V    ++     V+L TGT+LRG I +G+    +G  G   ++ L  
Sbjct: 134 VDIRASDGAVESVVTALGALYHARAVILCTGTYLRGRIFVGEYTAQSGPDGLHAADQLTA 193

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGIT 243
           +  +      R KTGTPAR D ++I +   E Q  D+ + PFSF TD  +   +  C I 
Sbjct: 194 ALERLGLPLRRFKTGTPARADRRSIDFQLLEVQEGDDPITPFSFETDGGMLKNRAVCHIA 253

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +THR+I+EN+  S +YSG I+  GPRYCPSIEDK+VRF ++  HQIF+EP GL+T+
Sbjct: 254 YTNEQTHRVILENLHRSPLYSGQIEGIGPRYCPSIEDKVVRFSDKPRHQIFIEPMGLDTN 313

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+S++LPEE+Q +  RT+ G E++ I+R  YAIEYD ++P  L  TLE K + GL
Sbjct: 314 EVYLQGMSSSLPEEVQVKLYRTVKGFEQIRIMRNAYAIEYDCLDPTCLQATLECKAVRGL 373

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ NGT+GYEEAAAQGL+AGIN+AR       +   R  SYIG +IDDL  KG  +P
Sbjct: 374 YGAGQFNGTSGYEEAAAQGLIAGINAARAVQGKTPLVLDRASSYIGTLIDDLVVKGCNDP 433

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR+EYR+ LR DNAD RLTPIG ++G IG  R   F K  +        L+++  
Sbjct: 434 YRMMTSRSEYRLILRQDNADMRLTPIGYEIGLIGAERWAAFLKKRELVEGEIRRLRAVHT 493

Query: 484 TSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  ++     T     E L  P  S  +L    P+  +  + V E+++I  
Sbjct: 494 APSEKLNALLVSRETSPIATGIRLCELLKRPQLSYASLAPFDPERPELPAQVCEQVEITI 553

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q+ + ++++  E + +P D DY S+  L  E  EKL+ L+P N+ QAS+I G
Sbjct: 554 KYEGYIKKQLEQVEQMRRLEGKQLPGDLDYQSIGGLRLEAVEKLTRLRPLNIGQASRISG 613

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++LLI++ ++     +
Sbjct: 614 VSPADVSVLLIWLSQHHASTQK 635


>gi|257468580|ref|ZP_05632674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062837|ref|ZP_07927322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688513|gb|EFS25348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium ulcerans ATCC 49185]
          Length = 628

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/625 (42%), Positives = 381/625 (60%), Gaps = 16/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIV+G GHAGCEA   AA++GA TA+ T     IG MSCNP++GG  K HL+REID
Sbjct: 2   QNFDVIVVGAGHAGCEAGLAAARMGAQTAIFTITLDNIGVMSCNPSLGGPAKSHLIREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ R+LN KKGPAVR  R QAD+  Y   M++ I + +NL  IQG 
Sbjct: 62  ALGGEMGRNIDKTYIQIRILNTKKGPAVRSLRAQADKVRYSKEMKKTIENCDNLTTIQGM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +  ++    R   V++ TGTFLRG+IHIG      GRMG+  S+ L 
Sbjct: 122 VTDIIIEDGKVIGVKTREGVEYRAKFVIIATGTFLRGLIHIGDKHFSGGRMGELSSDDLP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDKIT---NRQIE 239
            S  K      R KTGTP+R+D +T+ + K E+Q  + + ++ FS  T        +QI 
Sbjct: 182 LSLEKAGLKLARFKTGTPSRIDARTVDFSKIEEQPGETDDILKFSTRTPNEELEGRKQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H II  N + S +++G I   GPRYCPSIEDK+ R+G++N H +FLE EG
Sbjct: 242 CYIAHTNEIVHDIIKNNRERSPLFNGTIHGTGPRYCPSIEDKVFRYGDKNQHHLFLEREG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y  G+S++LP ++Q + ++ I GLE  +I+R GYAIEYDY+ P+E+  TLE+K 
Sbjct: 302 YDTTEIYLGGLSSSLPTDVQDEMVKNIVGLENAHIMRYGYAIEYDYVPPQEIKYTLESKT 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSY+G ++DDL SKG
Sbjct: 362 VENLFLAGQINGTSGYEEAGAQGLLAGINAVRKLQGKEPIILDRADSYMGTLVDDLVSKG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFT+R+EYR++LR DNAD RL+ IG ++G + E    R  +  ++   ++  LK
Sbjct: 422 TNEPYRMFTARSEYRLALREDNADLRLSKIGYEVGLLPEEEYLRVVQKGKDVEIIKEKLK 481

Query: 480 SLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS 529
              +   N      L     +  +DG T   +E L  PD    ++  I      +   +S
Sbjct: 482 GNYVGPSNPRVNEVLRKYGEAELKDGTTY--FELLRRPDVKYSDIKYIAELSDLELGDYS 539

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
                +++++  Y+ Y  R M   ++ K  E + +P+D DY SL  +  E K+KL  ++P
Sbjct: 540 KDTEYQVEVQVKYSGYIERSMKMIEKHKSLENKKLPEDLDYDSLENIPKEAKDKLKAVRP 599

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
           +N+ QAS+I G++PA + +LLIY+K
Sbjct: 600 YNIGQASRISGVSPADIQVLLIYLK 624


>gi|297570271|ref|YP_003691615.1| glucose inhibited division protein A [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926186|gb|ADH86996.1| glucose inhibited division protein A [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 662

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/662 (43%), Positives = 392/662 (59%), Gaps = 45/662 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+IV+G GHAGCEAA  AA+LG  TAL+     TI ++SCNPA+GGL KGHLVRE
Sbjct: 1   MKEHYDIIVVGAGHAGCEAALAAARLGCRTALLVMNADTIAALSCNPAVGGLAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  DA GIQFR LN  +GPAVR  R QADR LY   M++ I +Q NL++ Q
Sbjct: 61  IDALGGEMARNIDATGIQFRQLNTSRGPAVRSSRAQADRRLYPQRMKKVIEAQPNLELRQ 120

Query: 122 GEVAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                   +    ++ +  +       +    V++TTGTFL G+IHIG    PAGR+GD 
Sbjct: 121 ATADQLLIDTSHGRSRVCGVETSLGERLLAGAVIITTGTFLNGLIHIGLKHFPAGRLGDP 180

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITN 235
           PS SL        F  GR+KTGTP RL+G +I + + E Q  D+    FSF  +  K   
Sbjct: 181 PSLSLPGHLKALGFAMGRMKTGTPPRLNGGSIDYRQLESQPGDDPPQLFSFANVGQKPPL 240

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C IT T   TH II      S +++G I+  G RYCPS+EDKI+RF E+  HQIFL
Sbjct: 241 PQVPCHITYTTAATHEIIRAGCGQSPLFTGVIQGVGARYCPSVEDKIIRFPEKERHQIFL 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+T  VYPNG+ST+LP E+QH  IR++PGLE+  +IRPGYAIEYDY++P EL P L
Sbjct: 301 EPEGLDTLEVYPNGLSTSLPLEVQHAMIRSVPGLERARMIRPGYAIEYDYVDPLELHPWL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E K++  LFLAGQINGT+GYEEAAAQGL+AGIN+ R+   L+ +   R+ +YIGV+IDDL
Sbjct: 361 ECKRLEHLFLAGQINGTSGYEEAAAQGLMAGINAVRQLGGLEPVVLDRSQAYIGVLIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYR+FTSRAEYR+ LR DNAD RL  IG ++G + E R + F +  +    L+
Sbjct: 421 VTKGTKEPYRLFTSRAEYRLLLREDNADFRLCEIGHQIGLLDEPRYRFFRRKRENMALLK 480

Query: 476 SLLKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK----- 527
             L+   L      N     +      +  +  E L  P+ +I  + ++  ++       
Sbjct: 481 QQLEQTRLHPTPEVNRQLAELPSSPLRQPISLAELLRRPELNIDTVLALAGESGALPAAQ 540

Query: 528 -------------------------------FSSLVIERLQIESSYAAYTGRQMIEAKEI 556
                                          FS  + + +++E  YA Y  RQ  + +  
Sbjct: 541 PLAAGTLAAPAPAIDPAIAPAGHGEAQQPTYFSRHIRQEVELELKYAGYIARQQEQVQRF 600

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +  E + +P D  Y+ +P LS E+ EKL  ++P  L QA++I G+TPAA+++L + +KK 
Sbjct: 601 RKLESQRLPDDLQYAGMPGLSLEVAEKLERVRPRTLGQAARISGITPAAISILQVQLKKR 660

Query: 617 TV 618
           T 
Sbjct: 661 TA 662


>gi|116254462|ref|YP_770300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|205375709|sp|Q1MA19|MNMG_RHIL3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115259110|emb|CAK10221.1| putative glucose inhibited division protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 625

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/616 (60%), Positives = 465/616 (75%), Gaps = 1/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIVIGGGHAG EAA+ AA+LGA TALITH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDNVFDVIVIGGGHAGSEAASAAARLGAKTALITHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +  +LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRMLNKKKGAAVRGPRTQADRKLYRLAMLAAIEATPDLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +     ++ ++M+D+  ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLDVVDGCVAGVIMKDDRTLKAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE LIPFSFMTD IT RQIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSIGRQGADEELIPFSFMTDTITTRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL P+LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQADFIKTIPGLEAARILQPGYAIEYDHVDPRELTPSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A +S+  D   FSRT SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSSDSDPFHFSRTSSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP+ M++GC+ + R +RF  Y  E    R+LL+S
Sbjct: 421 TEPYRMFTSRAEYRLSLRADNADMRLTPLAMRVGCVSDARVRRFTSYQAEIETCRALLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           L +T        ++   DG+ RTAY+ LSYP++S   L  + P+        V E L+IE
Sbjct: 481 LAVTPNEARRAGLNINLDGQRRTAYDLLSYPNYSFAALSDVWPEKLGMIGPKVAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KL   +PFN+ QA+ +E
Sbjct: 541 AGYSVYLDRQASAIADQQRDEERQIPLDFNYDALAGLSNELKVKLGTARPFNIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKK 615
           GMTPAA+ LLL+++++
Sbjct: 601 GMTPAAIALLLVHLRR 616


>gi|237738381|ref|ZP_04568862.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420261|gb|EEO35308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium mortiferum ATCC 9817]
          Length = 627

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/624 (43%), Positives = 377/624 (60%), Gaps = 15/624 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DVIV+G GHAGCEAA  +A++GA TA+ T     IG MSCNP+IGG  K HLV+EID
Sbjct: 2   HNFDVIVVGAGHAGCEAALSSARMGAKTAIFTITLDNIGVMSCNPSIGGPAKSHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   +Q RVLN KKGPAVR  R QAD+  Y   M++ + +  NL  IQG 
Sbjct: 62  ALGGEMGRNIDKTFVQIRVLNTKKGPAVRALRAQADKVKYAKEMKKTLENCPNLSTIQGM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   I  + +++    R   V+L TGTF+RG+IHIG+     GRMG+  S+ L 
Sbjct: 122 VTDLVIEDGKIIGVKIREGVEYRAKMVILATGTFMRGLIHIGQNHFSGGRMGELSSDDLP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---DKITNRQIEC 240
            S  K     GR KTGTP+R+D +TI + K E+Q  DE L+ FS  T   +     QI C
Sbjct: 182 LSLEKAGIKLGRFKTGTPSRIDARTIDFSKVEEQPGDEELLKFSSRTSDEEIKNREQISC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN + H II  N   S +++G I+  GPRYCPSIEDK+ R+ ++N H +FLE EG 
Sbjct: 242 YIAHTNEKVHEIIKSNKHRSPLFNGTIQGTGPRYCPSIEDKVFRYEDKNQHHLFLEREGS 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y  G+S++LP ++Q   ++ I GLE  +I+R  YAIEYDYI P+E+  +LE++ +
Sbjct: 302 ETNEIYLGGLSSSLPTDVQEGMLKNISGLEDAHIMRYAYAIEYDYIPPQEIKYSLESRTV 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL +KG 
Sbjct: 362 ENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLQGKEPVILDRADSYIGTLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E   +R  K  ++   +++ L  
Sbjct: 422 NEPYRMFTARSEYRLLLREDNADLRLSKIGYEIGLLPEEEYRRVQKKEKDVEEIKAKLME 481

Query: 481 LVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSS 530
             +   N      L     +  +DG T   +E L  P  + Q++  I          +  
Sbjct: 482 NYVGPSNPRVNEVLEKRGETPLKDGVTY--FELLRRPSVTFQDIKYISELSDMKIEDYCR 539

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
               +++++  Y+ Y  R M   ++ K  E + IP D DY +L  +  E K+KL   +P 
Sbjct: 540 DTEYQVEVQVKYSGYIERSMKMIEKHKSLENKKIPADLDYDTLENIPKEAKDKLKAARPL 599

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
           N+ QAS+I G++PA + +LLIY+K
Sbjct: 600 NIGQASRISGVSPADIQVLLIYLK 623


>gi|157738409|ref|YP_001491093.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Arcobacter butzleri RM4018]
 gi|205831487|sp|A8EWV0|MNMG_ARCB4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157700263|gb|ABV68423.1| glucose inhibited division protein A [Arcobacter butzleri RM4018]
          Length = 625

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/615 (43%), Positives = 365/615 (59%), Gaps = 6/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  +A++G  T LIT     IG+ SCNPAIGGL KGHLVRE+DA
Sbjct: 2   NYDVIVVGGGHAGIEASLASARMGKKTLLITMLVEQIGAASCNPAIGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G MG   D  GIQFR+LN  KG AV+G R Q D + YR  M++   +  NL+V Q EV
Sbjct: 62  IGGEMGLCTDNTGIQFRILNASKGAAVQGSRAQIDMDKYREYMRKVCHNTPNLEVYQDEV 121

Query: 125 AGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                +  N +  +  +         VVLTTGTF+RG++HIG+ K  AGR  + PS +L 
Sbjct: 122 TALLVKNDNEVCGVKTKLTEEFIAKKVVLTTGTFMRGLVHIGENKYEAGRAWELPSTTLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIECG 241
               +     GRLKTGTP+RLD  +I +   +    D    PFSF T+K      Q  C 
Sbjct: 182 TQLKELGLRVGRLKTGTPSRLDANSIDFSVMDMHGGDVNPAPFSFRTNKSDFAPTQFPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER+ HQ+FLEP+   
Sbjct: 242 ITYTNEKTHEIISSNFYRAPLFTGQIEGLGPRYCPSIEDKVNRFAERDRHQLFLEPQTAM 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+S++LP ++Q   I ++ GLE   IIR GYAIEYDY++P EL  TLETKKI 
Sbjct: 302 CTEYYINGMSSSLPIDVQKAMIHSVKGLENAKIIRYGYAIEYDYVDPTELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AGQIN TTGYEEAAAQGL+AGIN+    ++ +     R ++YIGV+IDDL +KG  
Sbjct: 362 NLYHAGQINATTGYEEAAAQGLIAGINACLSIDEKEPFILRRDEAYIGVLIDDLVTKGTN 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR +NAD RL+  G K G I +   K+     +        + + 
Sbjct: 422 EPYRMFTSRAEYRLLLREENADLRLSQYGHKFGLIDDETIKKVENKRKTIEEAIEFMANE 481

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +TSK  +     SI  ++        + +      I     + P      + + E++ I
Sbjct: 482 WMTSKKETLELLESIGEEKINDRVLLVDLIGRNSIDIFKFEKLVPSFAHLDNYLKEQIII 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  + +++K   K  IP+ F Y  LP LSNE+ EKL   +P  +  AS I
Sbjct: 542 EAKYYRYIQKQQKQIEKMKKMLKATIPESFSYKGLPGLSNEVVEKLEKHRPPTIFNASLI 601

Query: 599 EGMTPAALNLLLIYI 613
            G+TPAAL+++ + +
Sbjct: 602 SGVTPAALDIIHLNL 616


>gi|322437302|ref|YP_004219514.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX9]
 gi|321165029|gb|ADW70734.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX9]
          Length = 672

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/670 (42%), Positives = 391/670 (58%), Gaps = 49/670 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+V+G GHAGCEAA  +A++G  TAL T     +  MSCNPA+GG+ KGHLVRE
Sbjct: 3   VTEQYDVVVVGAGHAGCEAAVASARMGLRTALFTLNLDLVAQMSCNPAVGGIAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID+L G+MG +AD+AGIQFR+LN  +GPAV  PR Q D+ LYR+ M+  + +Q NL + Q
Sbjct: 63  IDSLGGIMGLIADSAGIQFRLLNTSRGPAVWSPRAQCDKALYRVRMKELLENQPNLHLKQ 122

Query: 122 GEVAGFNTEKN---------------------IISSIVMQDNSMIRCSTVVLTTGTFLRG 160
            EV     E                        I  + ++D   I  +  ++TTGTFL G
Sbjct: 123 AEVVDVLIEGPGRREQGSAAAYPDPCSLIPVPCIRGLKLRDGREIHAAATIITTGTFLNG 182

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
           +IH G+ +  AGR G+  S  L  S  +      RLKTGTP RLDG+TI W +  +Q  D
Sbjct: 183 LIHCGEQQYSAGRSGEPASVLLGESLKRLGLRETRLKTGTPPRLDGRTIDWSQFPEQPGD 242

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
               PFS  T ++  RQI C I  T+ ET  +I EN   S +Y+G I++ GPRYCPSIED
Sbjct: 243 PEPTPFSLRTRELPLRQISCHIAHTSPETMWLIRENAHRSPMYTGQIEAIGPRYCPSIED 302

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           KIVRF ++  HQ FLEPEGL T  VY NG+ST+LP+EIQ Q + +IPGLE   ++RPGYA
Sbjct: 303 KIVRFPDKPRHQFFLEPEGLTTHEVYINGMSTSLPQEIQLQMVHSIPGLENTVMLRPGYA 362

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK----- 395
           IEYD I+P EL  +L  K   GL+LAGQINGT+GYEEAAAQGL+AGIN+A    +     
Sbjct: 363 IEYDAIDPTELDRSLRVKSYEGLYLAGQINGTSGYEEAAAQGLMAGINAALSVKRARGDA 422

Query: 396 -LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             +     RT++YIG++IDDL SKG  EPYRMFTSRAE+R+ LR DNAD RLTP G +LG
Sbjct: 423 SAEPFHLDRTEAYIGILIDDLISKGTDEPYRMFTSRAEFRLHLRIDNADRRLTPHGHRLG 482

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLT----SKNLSSTSISFKQDGKT----RTAYE 506
            IG+     +          ++LL++  L       +L +  ++    G          +
Sbjct: 483 LIGDENWADYEARQHRAAAFKTLLETTRLNAREIPADLYAKLLAGSAQGVDSFAGVLLSD 542

Query: 507 FLSYPDFSIQNLFSICPDA--------------RKFSSLVIERLQIESSYAAYTGRQMIE 552
            L  PD  I++   +  +A                 +      ++ E  YA Y  +Q+  
Sbjct: 543 LLKRPDLVIEDFVPLLTEALAAPIFTAWQDETFPARTRNERRAVETEIKYAGYLSQQLRS 602

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
             ++K  E   IP  FDY+++  LS E+++    ++P  L QAS++ G+TPAA++L+ +Y
Sbjct: 603 IGKMKQAESTRIPPTFDYTTISGLSREMQQTFQRVRPLTLGQASRLPGVTPAAVSLVHVY 662

Query: 613 IKKNTVKLNE 622
           ++  + +L  
Sbjct: 663 LEIQSRRLTA 672


>gi|203287637|ref|YP_002222652.1| glucose inhibited division protein A [Borrelia recurrentis A1]
 gi|201084857|gb|ACH94431.1| glucose inhibited division protein A [Borrelia recurrentis A1]
          Length = 626

 Score =  730 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/630 (45%), Positives = 402/630 (63%), Gaps = 13/630 (2%)

Query: 1   MINR---SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           M  +    +D IVIGGGHAG EA+   A+L   T LIT    T+G +SCNPAIGGL KG+
Sbjct: 1   MFRKIGMDFDAIVIGGGHAGIEASLALARLNFKTILITQNLDTVGKLSCNPAIGGLAKGN 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +VREIDAL G MG + D + IQFR+LN  KGPAV+ PR QAD+ +Y++  +  +  Q NL
Sbjct: 61  MVREIDALGGEMGCLVDFSMIQFRILNKSKGPAVQAPRAQADKLVYQIKAKETLEMQNNL 120

Query: 118 DVIQGEVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           ++ Q  V+    N  KN I  +V +  +      VVLTTGTFLRG I IG+ K   GR+ 
Sbjct: 121 ELFQDTVSDFLLNPMKNKIEGVVTERGNKFTSRVVVLTTGTFLRGKIFIGEYKAYMGRIS 180

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L    ++  F+ GRLKTGTPAR+  ++I + KTE QF D  +IPFSF   KI  
Sbjct: 181 EPAAFGLEKILLELGFEMGRLKTGTPARVHRRSINFAKTEIQFGDSDIIPFSFSNTKIDK 240

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T TN +TH II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+
Sbjct: 241 TQLSCYVTYTNKKTHEIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDKHQIFI 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG+NT  +Y NG+S++LPE++Q + I +I GLE   I R GYA+EYDYINP EL+ +L
Sbjct: 301 EPEGINTQEMYLNGLSSSLPEDVQKRLINSIDGLEDAVITRSGYAVEYDYINPIELYASL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK++ GLF+AGQ NG++GYEEAAAQGL+AGIN+A K  K + +   RT SYIGV+IDDL
Sbjct: 361 ETKRVEGLFVAGQTNGSSGYEEAAAQGLMAGINAALKLQKKEPMILPRTSSYIGVLIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYRMFTSRAE+R++LR D +D RL   G ++G + E +  R+    ++   ++
Sbjct: 421 VTKGTKEPYRMFTSRAEHRLNLRHDTSDKRLIKWGYEVGLVSEEKYSRYFFKEKQIEEIK 480

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL+   L  K  SS  +    +      Y  +  P  ++++L +I P     S +++E+
Sbjct: 481 ELLRHRRLKEKEASSFELKRHINK---DFYHIVKDPYINLKDLVNIDPKLNA-SKVILEQ 536

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++++  Y  Y  RQ    +++   E   +P DF+Y  +  LS E +EK   ++P NL QA
Sbjct: 537 VELDIKYEGYINRQKDLIRKMNNLELIKLPLDFNY-EIDGLSREAREKFVKIQPANLAQA 595

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           S++ G+    + +LLIY    +   N++VL
Sbjct: 596 SRVSGVRNTDIQVLLIYF---SNPKNKVVL 622


>gi|227500994|ref|ZP_03931043.1| glucose-inhibited division protein A [Anaerococcus tetradius ATCC
           35098]
 gi|227216767|gb|EEI82165.1| glucose-inhibited division protein A [Anaerococcus tetradius ATCC
           35098]
          Length = 629

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/620 (43%), Positives = 379/620 (61%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEA   A++LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 10  SYDVIVVGAGHAGCEAGLAASRLGLKTLILTTSMESIADMPCNPNIGGTGKGHIVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ +  +  +D+ + EV
Sbjct: 70  LGGQMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRAYHDEMKKTLEDE--VDLFEQEV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N +   I S      ++  C  +++ TGT+L G I IG+ +  +G  G S +  L +
Sbjct: 128 DKINYKDGKIVSCETVQGAIFECKALIICTGTYLNGKILIGEYEKVSGPHGLSAATFLSD 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIE-CG 241
           S  +  F+  R KTGTPAR+D K++  +KTE Q  D+ +IPFSF+ +    ++R  E C 
Sbjct: 188 SLREMGFELRRFKTGTPARVDRKSLHLEKTEVQKGDKEVIPFSFLNEGEDFSHRHQEDCY 247

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET  IIMEN+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL 
Sbjct: 248 LTYTRPETKEIIMENLYRSPIYGGHIKGIGPRYCPSIEDKMVRFPDRDVHQVFIEPEGLT 307

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ ++L+ TLE+K   
Sbjct: 308 TDEMYIQGVSSSLPQEVQFDFYKTIVGLEDVKIMRPAYAIEYDMIDTRKLYRTLESKDYE 367

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K      +   R+D+YIGV+IDDL ++G  
Sbjct: 368 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEKPLILDRSDAYIGVLIDDLVTEGTK 427

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RLT +G  +G + E R ++        +     LKS+
Sbjct: 428 EPYRMMTSRCEYRLTMRQDNADQRLTKLGYDIGLVSEERYQKMLAKRNAIDCEIERLKSV 487

Query: 482 VLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            LT K   N     ++        + Y+ L  P+     L +  PD  +       ++Q 
Sbjct: 488 SLTPKAETNQKLEELNTSPLKNGISLYDLLKRPEVDYDMLEAFDPDRPQLPKFQQIQVQT 547

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +QM +  + K  E + + K+ DY  +P L  E  EKL+ ++P ++ QAS+I
Sbjct: 548 EIKYEGYIKKQMADIDKFKKLEGKKLAKNIDYFKIPGLKKESCEKLNEIQPESIGQASRI 607

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G++PA +N+LLI +K   +
Sbjct: 608 SGVSPADINVLLIRLKTGEL 627


>gi|189499008|ref|YP_001958478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium phaeobacteroides BS1]
 gi|189494449|gb|ACE02997.1| glucose inhibited division protein A [Chlorobium phaeobacteroides
           BS1]
          Length = 623

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/620 (44%), Positives = 384/620 (61%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA   A++G    LIT   S I  MSCNPAIGG+ KG + REIDAL
Sbjct: 4   YDLIVAGAGHAGCEAALAGARMGLKCLLITSDFSAIARMSCNPAIGGVAKGQITREIDAL 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QADR  Y   M++ I  + N+D++Q  V 
Sbjct: 64  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADRTNYSAYMRKIIEQETNIDLLQDSVI 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
              T +   +  ++     I    V+L+ GTFL G+IHIG    P GR + + P   L  
Sbjct: 124 RIATNQGTCNGAIVSSGRTIEAKAVILSCGTFLNGLIHIGMNHYPGGRTIAEPPVQGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGIT 243
           S     F+ GRLKTGTP R+D +++ + +   Q  D    PFSF T+ +   +Q+EC +T
Sbjct: 184 SLASLGFEHGRLKTGTPPRIDQRSVDYARVSVQPGDRDPSPFSFSTESLAGRKQVECFLT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   THRI+ E  + S ++SG ++  GPRYCPSIEDKI RF E+N H IFLEPEG  T+
Sbjct: 244 ATTENTHRILQEGFERSPLFSGKVQGVGPRYCPSIEDKIHRFREKNSHHIFLEPEGFETN 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + +R+IPGLE V ++RPGYAIEYDY  P +L PTLETK+I  L
Sbjct: 304 EMYVNGFSTSLPEDIQLKGLRSIPGLENVIMMRPGYAIEYDYFYPFQLHPTLETKRIKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQG++AGIN+A    + + +   R+++YIGV+IDDL +K   EP
Sbjct: 364 YFAGQINGTSGYEEAAAQGIMAGINAALNIRQKEPLILKRSEAYIGVLIDDLITKETNEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+RI LR DNAD RL P G   G + E   +      +    ++ L+ S+ +
Sbjct: 424 YRMFTSSAEHRIILRQDNADLRLMPFGYACGLLSENTYRNLEIKRRNIASVKELISSIRV 483

Query: 484 TSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
            S ++++          + +      L  P  ++ +L +  P+           + V+E+
Sbjct: 484 ASDSINALLAEQGSPSISGSTRIATILKRPKITLSSLVNAFPEVADQISEVTQDNTVLEQ 543

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R+ + A++I   +   IP  F+YS+L  LSNE KEKLS +KP  + QA
Sbjct: 544 VEIDCKYEGYIQRERLMAEKIARLDSHRIPASFNYSALKGLSNEGKEKLSKVKPSTVGQA 603

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++L++ I +
Sbjct: 604 SRILGVTPADISVLMVKIGR 623


>gi|160932435|ref|ZP_02079825.1| hypothetical protein CLOLEP_01270 [Clostridium leptum DSM 753]
 gi|156868394|gb|EDO61766.1| hypothetical protein CLOLEP_01270 [Clostridium leptum DSM 753]
          Length = 626

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/615 (41%), Positives = 372/615 (60%), Gaps = 3/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG GHAG EAA  AA+LG  TA+ T     +G+  CNP+IGG  KGHLVREIDA
Sbjct: 7   QYDVVVIGAGHAGIEAALAAARLGCKTAVFTINMDAVGNCPCNPSIGGTAKGHLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ AD   +Q R+LN  KGPAV   R Q DR  Y   M+ ++  QENLD+ QGE+
Sbjct: 67  LGGEMGKTADQCLLQMRMLNRGKGPAVHSLRAQIDRRKYSEVMKHKLELQENLDLRQGEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  +     V + N++     V++ TGT+L G I++G++   +G  G  P+  L  
Sbjct: 127 TEIRRLGDDRWQAVTRMNAVFEAKAVIVATGTYLGGRIYVGEVSYESGPDGTFPAAFLGK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTPAR+   +I +   ++Q  ++ +IPFS+ T +    +  C I+ 
Sbjct: 187 SLKELGLRLRRFKTGTPARVLKSSIDFSGLQEQPGEDPVIPFSYDTAEPLKNKAVCHISW 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +T +II+ENI  S +Y G I+  GPRYCPS+EDKIVRF ++  HQ+F+EP G NT+ 
Sbjct: 247 TNEKTKQIILENIHRSPLYGGKIEGVGPRYCPSLEDKIVRFADKERHQLFIEPCGENTEE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPEE+Q QF  +I GLE   ++R  YAIEYD ++P ++  TLE     GL+
Sbjct: 307 MYLQGMSSSLPEEVQLQFYHSIKGLEHCLVMRCAYAIEYDCVDPLQMAATLEFMDYPGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NG++GYEEAAAQGLVAG+N+A K    + +   R  SYIG +IDDL +KGV +PY
Sbjct: 367 GAGQFNGSSGYEEAAAQGLVAGMNAALKIKGREQVVLDRASSYIGTLIDDLVTKGVEDPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLTP+G ++G I + R  RF +  +      + LK   L 
Sbjct: 427 RMMTSRSEYRLVLRQDNADERLTPLGREIGLISDSRWNRFVEKQELKRKELNRLKKTSLP 486

Query: 485 S-KNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             K L+   +S +           E L  P      L  +          + E++++E  
Sbjct: 487 PTKELNEILVSRETSPVETGIRLLELLKRPQVDYACLAPVDTTRPDLDPNIFEQVEVEIK 546

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  +  E++  E + +PK+ DY  +  +S+E +EKL+ ++P N+ QAS+I G+
Sbjct: 547 YEGYIRRQKSQIDEMRRLEGKRLPKELDYQEIHGISSEAQEKLNRVRPGNIGQASRISGV 606

Query: 602 TPAALNLLLIYIKKN 616
           +PA +++LLI++ +N
Sbjct: 607 SPADISVLLIWLSQN 621


>gi|227873161|ref|ZP_03991452.1| glucose-inhibited division protein A [Oribacterium sinus F0268]
 gi|227840992|gb|EEJ51331.1| glucose-inhibited division protein A [Oribacterium sinus F0268]
          Length = 633

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/619 (41%), Positives = 372/619 (60%), Gaps = 7/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +    D++V+G GHAG EAA V+AK G  T L T    +I  M+CNP IGG  KGHLVRE
Sbjct: 4   LEEQVDIVVVGAGHAGVEAALVSAKRGHKTLLFTLSPDSISMMACNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG+V D + +Q R+LN  KGPAV   R QAD+++Y   M+  + +QENL + Q
Sbjct: 64  LDALGGMMGKVCDQSFLQSRMLNQSKGPAVHSLRAQADKQVYSRNMRHLVENQENLHIRQ 123

Query: 122 GEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           GE+       EK  I  +V    +      V++ TG +L      G++    G  G   +
Sbjct: 124 GEIVSLLCNEEKTEIRGVVSSTGARYYAKAVLICTGVYLNARCIYGEVSEETGPNGLRRA 183

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQ 237
             L  + +   F   R KTGTPAR+D +++ + K E Q  D  ++PFSF TD   +   Q
Sbjct: 184 TKLSQALLDLGFRLQRFKTGTPARVDRRSLDFSKMEVQKGDVPVVPFSFSTDPASVQIPQ 243

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            +C +T T  E H +I ENI  S +Y+G I+  GPRYCPSIEDK+++F E+N HQIF+EP
Sbjct: 244 EDCYLTYTCEEGHEMIRENIDRSPMYNGVIQGTGPRYCPSIEDKVMKFPEKNRHQIFVEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG  T+ +Y +G+S++LPE++Q + +RT+ G EK  ++R GYAIEYD +N  EL  TLET
Sbjct: 304 EGRYTNEMYLSGLSSSLPEDVQMRILRTMAGFEKSEMVRCGYAIEYDCLNSLELENTLET 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKISGL+ AGQ+NG++GYEEAA QG +AGIN+ +K    +     R+++YIGV+IDDL +
Sbjct: 364 KKISGLYFAGQMNGSSGYEEAAVQGFMAGINAVQKIEGKEPFVLDRSEAYIGVLIDDLVT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K   EPYRM TSRAEYR+ LR DNAD RL   G  LG + E   K   +  +        
Sbjct: 424 KENKEPYRMMTSRAEYRLLLRQDNADLRLREKGYALGMVSEEEIKATREKQEAIQKELRR 483

Query: 478 LKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +++  + +   ++    SIS        +  E    P+ + QN+  + P+    S  + E
Sbjct: 484 METTYIGANAENNRILESISSSPIQSGISLRELCKRPECNYQNIAPLDPERPFLSPFIQE 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++IE  Y  Y  RQ+ + +  K  E++ +PKD  Y  +  L  E ++KL +++P N+  
Sbjct: 544 EVEIEIKYEGYIKRQIQQVEAFKKMERKKLPKDICYHDIHNLRLEARQKLDLIRPENMGM 603

Query: 595 ASKIEGMTPAALNLLLIYI 613
           AS+I G++PA L++LLIY+
Sbjct: 604 ASRISGVSPADLSVLLIYL 622


>gi|223038982|ref|ZP_03609274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter rectus RM3267]
 gi|222879955|gb|EEF15044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter rectus RM3267]
          Length = 621

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/620 (44%), Positives = 368/620 (59%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDIIVVGGGHAGIEASLAAARMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +    I+ +     +  R S +++TTGTFL G+IH+G  K+ AGR+G+  + +L +
Sbjct: 122 TQILSRNGEITGVKTHLGNEYRTSKLIITTGTFLNGLIHVGFNKLEAGRVGELSAKNLSD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S      + GRLKTGT  R+D K+I +   E Q  DE   PFSF T      Q+ C I  
Sbjct: 182 SLRDLGLEVGRLKTGTCPRVDAKSIDFSVLEIQGGDEEPSPFSFRTRDFAPTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L    
Sbjct: 242 TNETTHDIIRSNFDKAPLFTGQIEGVGPRYCPSIEDKINRFGDRDRHHLFVEPQTLEATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP E+Q   +R++ G E   I+R GYAIEYDY+ P EL  TLETKK  GL+
Sbjct: 302 YYINGFSTSLPYEVQVAMLRSVRGFENARIVRHGYAIEYDYVQPTELKHTLETKKARGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+A   +  +     R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAGAQGLMAGINAALALDGKEPFVLRRDEAYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNA  RL   G +LG + E   ++             LL    +T
Sbjct: 422 RMFTSRAEYRLLLREDNAVLRLGGYGRELGLLDEATFEKIEAIRSNLTRGLELLNGTEIT 481

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     S+  +   +  T  + ++   F+ + L  + P         +E++  E+ 
Sbjct: 482 PTKRNLELLDSLDEEIISQNLTLQKIVARKSFTGEKLRKLDPFFEALDEASLEQILTEAK 541

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q  +   +K      IP+ F++  +  LSNE+ EKL    P  L  AS+I G+
Sbjct: 542 YQHYIAEQKKQIDRMKDMMSVKIPEGFNFRGISGLSNEVVEKLERFAPPTLFAASEISGV 601

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPAA+++L IYIK N  +  
Sbjct: 602 TPAAIDILHIYIKMNARESQ 621


>gi|116326853|ref|YP_796573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116329800|ref|YP_799518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282424|sp|Q04WG0|MNMG_LEPBJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|122285296|sp|Q056V5|MNMG_LEPBL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116119597|gb|ABJ77640.1| Glucose-inhibited division protein A [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123489|gb|ABJ74760.1| Glucose inhibited division protein A [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 635

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/624 (44%), Positives = 381/624 (61%), Gaps = 3/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D +V+G GHAG EAA +A+K GA T LIT    TIG MSCNPAIGG+ KGH+VRE
Sbjct: 10  FPNRFDCVVVGAGHAGSEAAYIASKGGAKTLLITMNLDTIGQMSCNPAIGGIAKGHMVRE 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG+V D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q
Sbjct: 70  VDALGGIMGKVIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSMRQ 129

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     
Sbjct: 130 DTVEELLIENDQVIGVKTGRGFEIYTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  K++   GRLKTGTP R+   ++       Q  D    PFSF T+KIT RQI C 
Sbjct: 190 LSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLAIQDGDANPSPFSFSTEKITRRQIPCY 249

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN+ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  
Sbjct: 250 ITYTNVETHKLIHENLSLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYE 309

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI 
Sbjct: 310 TTEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIK 369

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGLVA  +       LD + F R++SYIGV+IDDL  KGV 
Sbjct: 370 GLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLKNLDPLLFKRSESYIGVLIDDLVYKGVE 429

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRMFTSRAE+R+ LR DNAD RL   G +LG + +    R     +  N +R  +  +
Sbjct: 430 DPYRMFTSRAEHRLLLRQDNADQRLMKYGYELGLVDQESYDRMKDKYERVNSVREKIYQI 489

Query: 482 VLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L   +     +  K             FL  P+  I+++  + P+   +S      L++
Sbjct: 490 PLKPSDEFQNLLDQKGITNYKFGMKLDSFLKRPEIKIEDVEFMLPEVSSWSESEKNILEM 549

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  R++   +         IP+D +Y S+  L  E  +KL   KP  L +A +I
Sbjct: 550 EIKYEGYIKRELETIQWKNKYLDLAIPEDINYESIAGLKKEAIQKLKTHKPMTLEKAGQI 609

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G+ P+ ++LLL +IK    +  E
Sbjct: 610 SGVDPSDVDLLLYHIKGKRKQEAE 633


>gi|197106987|ref|YP_002132364.1| glucose inhibited division protein A [Phenylobacterium zucineum
           HLK1]
 gi|196480407|gb|ACG79935.1| glucose inhibited division protein A [Phenylobacterium zucineum
           HLK1]
          Length = 620

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/589 (53%), Positives = 407/589 (69%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+THK  TIG MSCNPAIGGLGKGHLVREIDALDGLMGR+AD +GIQFR+LN  KG 
Sbjct: 32  RTLLLTHKVETIGEMSCNPAIGGLGKGHLVREIDALDGLMGRLADVSGIQFRMLNRSKGA 91

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVRGPR+Q DR LYR AMQ E+L+  NL V    V     +   ++ +V           
Sbjct: 92  AVRGPRSQIDRRLYREAMQAELLATPNLTVRAEAVEDLVVQDGRVTGVVGASGETYPAGR 151

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLTTGTFL+GVIH G+ +IPAGR+GD+P+  L +         GRLKTGTPARLDGKTI
Sbjct: 152 VVLTTGTFLKGVIHQGETRIPAGRIGDAPAIGLSDRLYALGLSMGRLKTGTPARLDGKTI 211

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            WD+ E Q AD   IPFSF+T+ IT  QI CG+T T  ETHRII E ++ SA+Y G +  
Sbjct: 212 AWDRLEMQEADAEPIPFSFLTEAITVPQIRCGVTYTTEETHRIIAERLEESAVYGGRVSG 271

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF ++  HQIFLEPEGL+ D VYPNGIST++  E Q  F+RTIPGL
Sbjct: 272 RGPRYCPSIEDKVVRFRDKTSHQIFLEPEGLDDDTVYPNGISTSVSTETQDLFLRTIPGL 331

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E+V + R GYAIEYDY++P+EL+PTLE K++ GL+LAGQINGTTGYEEA AQGLVAG+N+
Sbjct: 332 EQVVVKRHGYAIEYDYVDPRELYPTLEAKRLPGLYLAGQINGTTGYEEAGAQGLVAGLNA 391

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR ++  +   F+R ++YIGV+IDDL ++GV EPYRMFTSRAE+R++LR DNAD RLT  
Sbjct: 392 ARAASGAEPAQFARDEAYIGVLIDDLVTRGVTEPYRMFTSRAEFRLTLRADNADQRLTGK 451

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G++LG +G  R   F    +     R++   L LT        +  K DG+ R   + L+
Sbjct: 452 GVELGVVGSERAGVFHVKQRALAEARAMANGLSLTPAEAQKAGLPVKADGQRRNLLQLLA 511

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           YP     +L  I P    +S  V E+++I++SYA Y  RQ  +A+  + +E   +P D D
Sbjct: 512 YPTIGFDDLARIWPQVGDWSPAVREQVEIDASYAGYLDRQAADAEAFRRDEDLRLPADLD 571

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           Y ++  LSNE++EKL+ ++P  L QA++IEG+TP AL  LL ++++   
Sbjct: 572 YGAIGGLSNEVREKLAAVRPLTLGQAARIEGVTPGALTALLAHVRRRAA 620


>gi|223936053|ref|ZP_03627967.1| glucose-inhibited division protein A [bacterium Ellin514]
 gi|223895275|gb|EEF61722.1| glucose-inhibited division protein A [bacterium Ellin514]
          Length = 651

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/642 (43%), Positives = 381/642 (59%), Gaps = 49/642 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+G GHAG EAA  AA++G  T L+T    TIG MSCNPAIGGL KGHL REID
Sbjct: 6   KKYDVIVVGAGHAGVEAALAAARMGCQTLLLTINADTIGQMSCNPAIGGLAKGHLTREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG+  D  G+QFR+LN KKGPAV  PR Q D++ Y+  ++     + NLDV QG+
Sbjct: 66  ALGGEMGKATDMTGLQFRMLNTKKGPAVWAPRAQCDKKAYQFRLKWVCEREPNLDVKQGQ 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 +   ++ +          +TVV+TTGTFLRG++HIG+ +   GR G+S + +L 
Sbjct: 126 TIKLVHQNGQVTGVETSLEVQYLSATVVITTGTFLRGLMHIGQNQQSGGRAGESAAMNLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-------- 235
            S  +   + GRLKTGTP RL  ++I + KT +Q  DE +  F++  D + +        
Sbjct: 186 ASLKEVGLELGRLKTGTPPRLLRRSIDFTKTAEQSGDEPIPFFTYWKDDLFHVEHSGVNP 245

Query: 236 --------------------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C IT T   T +II ENI  S +YSG I+  GPRYC
Sbjct: 246 RDIGHSAGKYPPGSILDRLNGQLHCYITYTTDATAKIIRENIHKSPMYSGVIEGVGPRYC 305

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIV+F E+   QIFLEPEG+ TD +Y NG ST LP E+Q Q ++TI G E   I+
Sbjct: 306 PSIEDKIVKFPEKERQQIFLEPEGIATDEIYVNGFSTCLPYEVQVQMVQTIIGCENAEIL 365

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RP YA+EYD+  P +L+P+LETK  S LFLAGQINGT+GYEEA AQGL+AGIN+ARK   
Sbjct: 366 RPAYAVEYDFAFPTQLYPSLETKVCSHLFLAGQINGTSGYEEAGAQGLMAGINAARKVQG 425

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            + I   R  +YIGV+IDDL +KG +EPYRMFTSRAEYR+ LR DNAD RL+  G ++G 
Sbjct: 426 KEPIILRRDQAYIGVLIDDLVTKGTIEPYRMFTSRAEYRLILRQDNADLRLSETGHQIGL 485

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI 515
           + ER   +F    +        L+                     T    + L  P  + 
Sbjct: 486 LPERNYIKFKAKREAIAAEIDRLEKTRQG----------------TDLLAQLLRRPQVTY 529

Query: 516 QNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           Q+L    P  R   S  VI++++I   Y  Y  RQ +E ++ K  E + IP  FDY ++ 
Sbjct: 530 QDL----PGKRTDLSEDVIQQVEIAIKYEGYIDRQELEVEKFKTLEDKQIPTAFDYDTVH 585

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +L  E ++KL  ++P  L QAS+I G++P+ + +L++++K+ 
Sbjct: 586 SLRTEARQKLKKIRPATLGQASRISGVSPSDIGILMVWLKRG 627


>gi|157827958|ref|YP_001494200.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932646|ref|YP_001649435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. Iowa]
 gi|166200609|sp|A8GQL7|MNMG_RICRS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039353|sp|B0BW03|MNMG_RICRO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157800439|gb|ABV75692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907733|gb|ABY72029.1| glucose inhibited division protein A [Rickettsia rickettsii str.
           Iowa]
          Length = 622

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 434/611 (71%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 LAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQQADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSAHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|126730103|ref|ZP_01745915.1| glucose-inhibited division protein A [Sagittula stellata E-37]
 gi|126709483|gb|EBA08537.1| glucose-inhibited division protein A [Sagittula stellata E-37]
          Length = 625

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/594 (53%), Positives = 417/594 (70%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T K S +G MSCNPAIGGLGKGHLVREIDALDGLMGRVAD AGIQFR+LN 
Sbjct: 29  RMGAKTALVTLKKSDLGVMSCNPAIGGLGKGHLVREIDALDGLMGRVADYAGIQFRLLNR 88

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KGPAV+GPR QADR+LY   MQ E+ + ENL++++ EV  F  E   ++ +V++D   I
Sbjct: 89  RKGPAVQGPRAQADRKLYAFKMQEELTAIENLEIVEAEVVDFTIENGRVAGVVLRDGQRI 148

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
              +VVLT+GTFLRG+IHIG    P GR+GD P+  L     +     GRLKTGTP RL+
Sbjct: 149 SSGSVVLTSGTFLRGIIHIGDRSYPGGRVGDDPAVRLAERIEELKLPLGRLKTGTPPRLN 208

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           GKTI WD  E+Q  D+  + FSF++     RQI CGIT TN  TH II +N+  SA+Y G
Sbjct: 209 GKTISWDALEQQPGDDDPVLFSFLSKAPLARQISCGITHTNARTHDIIRQNLSRSAMYGG 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+VRF E+  HQ+FLEPEGL+TD VYPNGIST+LP ++Q  ++R+
Sbjct: 269 HIEGTGPRYCPSIEDKVVRFAEKESHQVFLEPEGLDTDTVYPNGISTSLPADVQEDYVRS 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLEKV I++PGYAIEYD+++P  L  TL  K + GL+LAGQINGTTGYEEAAAQGLVA
Sbjct: 329 ITGLEKVEILQPGYAIEYDFVDPTSLDSTLRVKDLEGLYLAGQINGTTGYEEAAAQGLVA 388

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A  +   D I FSRTDSYIGVMIDDLT++ V EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 389 GLNAAAFALGRDRINFSRTDSYIGVMIDDLTTRSVTEPYRMFTSRAEFRLSLRADNADQR 448

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  + LG   E R   F + ++  +  R LL+    T   + +  I   QDG  R+ +
Sbjct: 449 LTPKAIDLGIASESRIGSFTRKMEALSSGRQLLEETTFTPSQVKTLGIVVNQDGARRSGF 508

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + LS+ D ++ +L  + P   +       +++ E+ YA Y  RQ  +   ++ +E   IP
Sbjct: 509 QLLSFKDVTLGHLSQLEPAFLEIDEETGAQIEKEALYANYLDRQAKDVDTLRRDEAVRIP 568

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            DFD+ SLP+LSNEL++KL  ++P ++ QAS+IEGMTPAAL L+L  +++   K
Sbjct: 569 LDFDFGSLPSLSNELRKKLEDVRPESIAQASRIEGMTPAALMLILAKLRQGERK 622


>gi|298243492|ref|ZP_06967299.1| glucose-inhibited division protein A [Ktedonobacter racemifer DSM
           44963]
 gi|297556546|gb|EFH90410.1| glucose-inhibited division protein A [Ktedonobacter racemifer DSM
           44963]
          Length = 686

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 381/661 (57%), Gaps = 51/661 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCE+A  +A++G  T L+T    ++  M CNP++GG  KGHL++EIDAL
Sbjct: 20  YDVIVVGAGHAGCESALASARMGLKTLLLTMNLDSVALMPCNPSMGGPAKGHLIKEIDAL 79

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +GR  D   IQ R+LN  KGPAV+  R Q D++ YRLAM+  + SQ NLD+ Q  + 
Sbjct: 80  GGEIGRNTDRTFIQMRLLNTSKGPAVQALRAQCDKQAYRLAMKFVLESQPNLDLRQATIL 139

Query: 126 GFN-----TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                     ++++  +V  +       +VV+TTGTF+ G + +G+   P GR G+ P+ 
Sbjct: 140 RLLSTQRDDGRHVMHGVVTSNGWEYHARSVVMTTGTFINGRLVVGEKTQPGGRAGEGPAL 199

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--------- 231
            + +S      +  R KTGTP R+D +TI + KTE+Q      + FS  T+         
Sbjct: 200 GISDSLRALGLEMRRFKTGTPPRIDARTIDFSKTERQPGSTIPLYFSQDTEAREDIQVPG 259

Query: 232 --------------KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                         +    Q+ C + RT   TH+II +N+  S +Y+G I+  GPRYCPS
Sbjct: 260 GKPNSVYPVLEEDLRGWRPQLPCYLVRTTERTHQIIRDNLHRSPLYTGIIEGVGPRYCPS 319

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDKIVRF ++  HQIFLEPEG  T  VY  G++T+LPE++Q + +R+IP LEK  I+R 
Sbjct: 320 IEDKIVRFADKVSHQIFLEPEGWRTGEVYVQGMNTSLPEDVQLEMLRSIPALEKAEIMRV 379

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYA+EYDY+ P +LFPTLETK ++GLFLAGQINGT+GYEEAAAQG++AGIN+A  +   D
Sbjct: 380 GYAVEYDYVLPTQLFPTLETKPVAGLFLAGQINGTSGYEEAAAQGIMAGINAALYARGED 439

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R ++YIGV+IDDL ++ + EPYR+ TSRAE+R+ LRP++AD RL     +LG IG
Sbjct: 440 GFVLGRHEAYIGVLIDDLVTRPMSEPYRLHTSRAEHRLLLRPESADLRLGDHAYRLGMIG 499

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFS 514
           + R ++  +  +       +L+S+  TS  ++     ++     G+  +A E L  P   
Sbjct: 500 DERYEQVVRKREAIQSTLEVLESVSFTSSRVTEQHAETLGIAPLGQKMSAKELLRRPAVK 559

Query: 515 IQNLFS--------------------ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
              +                      I  +         E ++++  Y  Y  +Q    +
Sbjct: 560 YFQIAQLSQRMVEERVSMDGAESASRIFMELTDLPEDTAEEVELQVKYENYVRKQEQLVR 619

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
                E+  IP++ DY  +  L  E ++KL   +P  + QAS++EG+TPA + +L++YI+
Sbjct: 620 RTSRLEEMRIPENLDYRDVQHLRTEARQKLLKTQPRTVGQASRVEGVTPADIAILMVYIQ 679

Query: 615 K 615
           K
Sbjct: 680 K 680


>gi|295398146|ref|ZP_06808195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus viridans ATCC 11563]
 gi|294973665|gb|EFG49443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aerococcus viridans ATCC 11563]
          Length = 633

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/624 (41%), Positives = 373/624 (59%), Gaps = 12/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  AA++GA T LIT     +  M CNP+IGG  KG +VREIDA
Sbjct: 9   KYDVIVVGAGHAGSEAALAAARMGAETMLITINIDMVAFMPCNPSIGGPAKGVVVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD++ Y   M++ I +Q++L + QG V
Sbjct: 69  LGGEMGRNIDKTYIQMRMLNTGKGPAVRALRAQADKDEYAKEMRKTIENQDHLTLRQGLV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  I+    ++ R   V+LTTGT  RG I IG+LK  +G     P+  L  
Sbjct: 129 DDLIIEDDTVKGIITNTGAIYRADAVILTTGTAARGEIIIGELKYSSGPNNSQPAEKLTR 188

Query: 185 SF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN----RQIE 239
           +   K+ FD  R KTGTP R+D +TI +D TE Q  D+    FSFM+          Q+ 
Sbjct: 189 NMAEKYGFDIARFKTGTPPRVDKRTINYDATEIQPGDDAPNHFSFMSKDADYLPLVDQVP 248

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH  I EN+  + +++G ++  G RYCPSIEDKIVRF ++  HQIFLEPEG
Sbjct: 249 CFLTYTNEATHETIRENLHRAPMFTGIVEGVGARYCPSIEDKIVRFADKPKHQIFLEPEG 308

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+ + +Y  G+ST+LPE++Q+  I ++ GLE   I+R GYAIEYD + P +L   LETK+
Sbjct: 309 LDNEEIYVQGLSTSLPEDVQNDMIHSVKGLENARIMRNGYAIEYDVVKPNQLKVNLETKQ 368

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++ LF AGQ NGT+GYEEAA QGL AGIN+  K    +     R   YIGVMIDDL +KG
Sbjct: 369 VANLFTAGQTNGTSGYEEAAGQGLYAGINAVLKIRGEEPFVIGRDQGYIGVMIDDLVTKG 428

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAEYR+ LR DNAD RLT  G + G + E +   +     E       L 
Sbjct: 429 TTEPYRLLTSRAEYRLLLRHDNADTRLTEKGYEFGLVSEEQYNLYKSNQAEVAEELDRLA 488

Query: 480 SLVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           ++ L         L+  + +  +DG    A + L  P+  I ++    P  +  S  V+E
Sbjct: 489 NVRLKPTQELQDYLAEKNSAALKDGI--MASDLLRRPELKIDDILKFAPSDKDLSRQVLE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  YA Y  ++  + +++   E++ IP D D+ ++ +L+ E +++L  + P  L Q
Sbjct: 547 QVEIQIKYAGYIVKEQRKVEKLHRLEQKEIPADIDWDAIDSLATEARQRLKEIGPRTLAQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS++ G+ PA ++++++Y++   V
Sbjct: 607 ASRVSGVNPADVSIIMVYLQGGHV 630


>gi|288956853|ref|YP_003447194.1| glucose inhibited division protein A [Azospirillum sp. B510]
 gi|288909161|dbj|BAI70650.1| glucose inhibited division protein A [Azospirillum sp. B510]
          Length = 634

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/615 (53%), Positives = 422/615 (68%), Gaps = 2/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++DVIV+GGGHAGCEAAA AA++GA T L+THK  TIG MSCNPAIGGL KGHLVREID
Sbjct: 6   RNFDVIVVGGGHAGCEAAAAAARMGARTLLLTHKIETIGEMSCNPAIGGLAKGHLVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+M +  D  GIQFR+LN  KGPAVRGPR QADR+LYR AMQ  +  Q+NL +  G 
Sbjct: 66  ALDGVMAKAIDRGGIQFRILNRSKGPAVRGPRAQADRKLYRQAMQALLAEQDNLFIEAGG 125

Query: 124 VAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E   I+ +V      IR   VVLTTGTFLRG+IHIG+ + PAGR+G++PS  L
Sbjct: 126 AEDLIVDEDQRITGVVTGAGESIRAGAVVLTTGTFLRGLIHIGEERTPAGRVGEAPSIGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            ++  +  F  GRLKTGTP RLDG+TI WD  EKQ  D    PFS+MT++I   QI+C I
Sbjct: 186 SDTLTRLGFPLGRLKTGTPPRLDGRTIDWDALEKQPGDLPPPPFSYMTERIDTPQIDCAI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H +I  N+  + +YSG I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+ 
Sbjct: 246 TWTTREAHALIRANLHRAPMYSGQITGTGPRYCPSIEDKVVRFADKEKHQIFLEPEGLDD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q   + ++PGLEKV +IRPGYAIEYDY++P+EL PTLET++  G
Sbjct: 306 PTVYPNGISTSLPRDVQLGILASMPGLEKVVMIRPGYAIEYDYVDPRELKPTLETRRAPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL-DCICFSRTDSYIGVMIDDLTSKGVL 421
           LFLAGQINGTTGYEEAAAQGL+AGIN+A  ++   D     R D+YIGV+IDDL  +G  
Sbjct: 366 LFLAGQINGTTGYEEAAAQGLMAGINAALAASGHRDGFVLDRADAYIGVLIDDLIGRGTN 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RLT  G+ +GC+G  R+  FA      +  R+L+ +L
Sbjct: 426 EPYRMFTSRAEYRLLLRADNADQRLTDKGVVIGCVGSERRDAFAAKSAALSAGRALVAAL 485

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             T   L+   ++  QDG  R+A + L YPD  +  L  + P+    +  + E+L+I+  
Sbjct: 486 QATPVELARQGVAVNQDGVRRSAADLLRYPDIDLAALARLWPELGGIAPDIAEQLEIDGK 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y GRQ  + +  + +E   +P D D   + +LS E+++KL   +P  L  A++I GM
Sbjct: 546 YAGYLGRQEADIRAFRKDESLALPDDLDVDGIGSLSAEIRQKLRQSRPATLGAAARIPGM 605

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL  LL ++K+ 
Sbjct: 606 TPAALVALLRHVKRR 620


>gi|157825212|ref|YP_001492932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia akari str. Hartford]
 gi|166199726|sp|A8GLZ9|MNMG_RICAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157799170|gb|ABV74424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia akari str. Hartford]
          Length = 622

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/611 (52%), Positives = 432/611 (70%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG ST LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVSTLLITLKPDNLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + +++IV+ ++S I C  ++LTTGTFL G+IHIGK KIPAGR+ + PS  L  
Sbjct: 123 EDIEIKSSKVAAIVLNNDSKIPCQKIILTTGTFLSGLIHIGKKKIPAGRVDEEPSYGLSK 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKKVGFKIARLKTGTPPRIDGRTIDYSKTALQPGDKAPRPFSELTNVVNVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLNKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++R GYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRLGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALAVKDQAQFILTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +G+ +G I E+R+K F K  ++    +SLL +L  T
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGINIGVISEKRKKIFTKKYEDIEKTKSLLNTLSFT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P F+I+    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMDIQVAQDGTYKTVLDLFKIPSFNIEQAIKIFPMLKEMQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQQADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGLARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITSIIIYLK 613


>gi|319936585|ref|ZP_08010999.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. 29_1]
 gi|319808383|gb|EFW04943.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Coprobacillus sp. 29_1]
          Length = 617

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/616 (40%), Positives = 372/616 (60%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EA    A++G  T LIT     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDVIVVGGGHAGIEACLAPARIGMKTLLITSHFENVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+ +DA  +Q ++LN  KGP V+  R QAD++ Y   MQ+ +  QE+LD+I+G V 
Sbjct: 62  GGQMGKTSDATYLQLKMLNTAKGPGVQSLRAQADKKAYPRYMQKVLKKQEHLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+  +  +++ +       TV+LTTGT+L+  I +G  K P+G   +  S  L + 
Sbjct: 122 NLIVEEQTVKGVILDNGKEYFGKTVILTTGTYLKAEILVGDQKTPSGPDQERQSLFLSDR 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
             +  F   RLKTGTP R+D +++ + +T+ Q      + FS+ T        Q  C +T
Sbjct: 182 LTELGFRIQRLKTGTPPRVDIESVDFSQTQLQPGTNEPLAFSYETTSYIPIEEQTPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +N+   ++YSG +K  GPRYCPSIEDKIV+F ++  HQIFLEPE    +
Sbjct: 242 YTNEDTHKIIKDNLHKCSMYSGIVKGIGPRYCPSIEDKIVKFSDKPQHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST++P +IQ Q IRTIPGL+   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSMPHDIQEQMIRTIPGLQNCKILKYAYAIEYDAIDPLQLWPSLETKVIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AG+N+A+K    + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAAQGLIAGLNAAKKLRGENPLILKRDEAYIGVMIDDLVTKGTKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RL   G     +     + +   ++  +     L+++  
Sbjct: 422 YRMLTSRAEYRLLLRHDNADERLRKYGYDAHLVKPEVYQIYLDKMERIHNEIERLETIRF 481

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T K+  +    ++   +  +  +A   L  P+     +     +    +    +R+ I  
Sbjct: 482 TPKHEINNILETLGSTRLSEGISAKSLLQRPEMDYSKIKPYIGET-SLTLEEEKRVTILI 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + +  + K  E++ IP D +Y ++  LS E K+KLS ++P  + QAS+I G
Sbjct: 541 KYKGYIDKALRQVDKQKKMEEKQIPVDINYDAVLNLSLEAKQKLSQIRPLTIAQASRISG 600

Query: 601 MTPAALNLLLIYIKKN 616
           + PA +++LLIY+K++
Sbjct: 601 INPADISVLLIYLKQH 616


>gi|303247211|ref|ZP_07333485.1| glucose inhibited division protein A [Desulfovibrio fructosovorans
           JJ]
 gi|302491370|gb|EFL51258.1| glucose inhibited division protein A [Desulfovibrio fructosovorans
           JJ]
          Length = 618

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/615 (44%), Positives = 364/615 (59%), Gaps = 3/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D+IV+G GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VREIDA
Sbjct: 2   TFDLIVVGAGHAGCEAAMAAARLGLETLLVTQNVDRIGHLSCNPAIGGLAKGHMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR LN +KGPAVR  R Q DR+ Y   ++  +  Q+NL V Q  V
Sbjct: 62  LGGMMGLWADAAGIQFRTLNTRKGPAVRSTRAQIDRDAYMRVVKAAVFGQDNLTVRQDSV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                       + +          V+LTTGTFL G++HIG  K+  GR+GD PS+ L  
Sbjct: 122 EEVLAVDGRARGVRVASGEDFAARVVLLTTGTFLCGLMHIGLTKLRGGRLGDPPSDGLSA 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GRLKTGT  RL  K+I +  T  Q  D    PFSF        Q+ C +T 
Sbjct: 182 SLRRHGIALGRLKTGTTPRLLAKSIDFSVTTPQPGDTSPPPFSFHGPGPILPQVPCHLTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH  I      S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL +  
Sbjct: 242 TNARTHEAIRAGFDRSPLFTGVIEGTGARYCPSVEDKVARFPERDRHHVFLEPEGLESPE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP E Q   I TIPGLEK  I+RPGYAIEYDY +P +L PTLETK + GL+
Sbjct: 302 IYPNGISTSLPIETQKAMIATIPGLEKAVIVRPGYAIEYDYADPVQLLPTLETKALPGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAA QGL A +N        +     R  +Y  V++DDL +KG  EPY
Sbjct: 362 LAGQINGTSGYEEAAGQGLWAALNVFCALAGREPFLPRRDQAYTAVLVDDLVTKGTSEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR  NAD RLTP+G +LG +G+R+   + +       +   + +  + 
Sbjct: 422 RMFTSRAEHRLLLREGNADARLTPMGRELGLVGDRQWDLYRRKEAALAAVIEGIAARRVR 481

Query: 485 S---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                +    ++  +   ++    E L  P+  I +L    P+     +++    +    
Sbjct: 482 PDDCDDADWQTLGGRPHDRSLRLEELLRRPEVGIADLARFWPELGSLDAIIAVEAETRIK 541

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ   A  +   E  L+P   DY+++  LS E+ EKL+ + P +L QA +I G+
Sbjct: 542 YEGYLRRQEELAGRMDRLEAVLLPPGIDYAAVAGLSREVVEKLTRIAPRSLGQAGRISGV 601

Query: 602 TPAALNLLLIYIKKN 616
           TPAAL+ L I++KK+
Sbjct: 602 TPAALSCLEIHLKKH 616


>gi|222099397|ref|YP_002533965.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Thermotoga neapolitana DSM 4359]
 gi|221571787|gb|ACM22599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/617 (41%), Positives = 370/617 (59%), Gaps = 7/617 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YD+IV+G GHAG EAA  +A++G    ++T    T+G   CNPAIGG  KG +VREI
Sbjct: 6   DRVYDIIVVGAGHAGIEAALASARMGFRVLVLTVNPDTVGWAPCNPAIGGPAKGVVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LNV KGPAVR  R Q D+  Y   M+R++ +  N+ +  G
Sbjct: 66  DALGGEMAKTTDETMINVRMLNVSKGPAVRALRAQIDKISYSRTMKRKLETNPNIVLRHG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     EK  +  +V           V++TTGTFLRG I IG+   PAGRMG+ P+  L
Sbjct: 126 IVERLLVEKGKVVGVVDNYGIDYLGKAVIITTGTFLRGKIFIGRSVFPAGRMGEFPAAKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECG 241
             S ++  F+ GR KTGTPAR+  ++I +   E+Q   +  + FSF ++ K+  +   C 
Sbjct: 186 TQSLIELGFEVGRFKTGTPARVLKRSINFSVMERQDTSDEPLAFSFFSEPKVLPKDYPCW 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRTN ETH II + ++ S +Y     I+  GPRYCPSIEDK+++F ++  HQ+F+EPEG
Sbjct: 246 LTRTNPETHNIIRQYLEFSPLYGTVKLIEGVGPRYCPSIEDKVIKFRDKESHQVFVEPEG 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+  Y NG+ST+LP E Q + IR++ GLE   I RP YAIEYDYI+P++L+PTLE+K 
Sbjct: 306 RDTEEYYLNGLSTSLPYEAQIKMIRSVKGLENAIITRPAYAIEYDYIDPRQLYPTLESKI 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQ+NGT+GYEEAA QGL+AGIN+A K      +   R+++YIGV+IDDL ++G
Sbjct: 366 VENLFFAGQVNGTSGYEEAAGQGLIAGINAALKLRGEPPLILKRSEAYIGVLIDDLVTRG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +        LK
Sbjct: 426 VDEPYRLLTSRAEYRLLLRHDNAHLRLAKHGYRVGLIPKWFYEKVLSLERRVKEEIERLK 485

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            +V+   +  +  +  +      +  + Y+ L  P+ S + L    P+       V E++
Sbjct: 486 KVVIKPSDRINDILMAEGTTPLKEATSLYQLLKRPELSYEVLKRFDPNPID-DPEVAEQV 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  +   E    +  E   IP D DY  +P LS E ++KL  ++P ++ QA 
Sbjct: 545 EINVKYEGYIQKMFEEVAIFEKYESYEIPADIDYDVVPNLSTEARDKLKRIRPRSIGQAM 604

Query: 597 KIEGMTPAALNLLLIYI 613
           +I G+ P+ ++ L+IY+
Sbjct: 605 RIPGINPSDISNLIIYL 621


>gi|294784742|ref|ZP_06750030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
 gi|294486456|gb|EFG33818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
          Length = 633

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG +T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYDTNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGENPIKDGSTLLELLRRPEVTFEDIKYISEEIKGLDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 DYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|34580957|ref|ZP_00142437.1| glucose inhibited division protein A [Rickettsia sibirica 246]
 gi|28262342|gb|EAA25846.1| glucose inhibited division protein A [Rickettsia sibirica 246]
          Length = 622

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 434/611 (71%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 LAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|15890076|ref|NP_355757.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Agrobacterium tumefaciens str. C58]
 gi|22095724|sp|Q8UBM0|MNMG_AGRT5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15158061|gb|AAK88542.1| glucose inhibited division protein A [Agrobacterium tumefaciens
           str. C58]
          Length = 627

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/602 (61%), Positives = 465/602 (77%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++S+DV+VIGGGHAG EAAA AA+ GA TAL+THK   IG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHQSFDVVVIGGGHAGSEAAAAAARHGAKTALVTHKREAIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFR+LN KKGPAVRGPRTQADR LYR AMQREI + +NL +I+
Sbjct: 61  IDALDGLMGRVADAAGIQFRMLNRKKGPAVRGPRTQADRRLYREAMQREIDAMDNLTIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+      + + +++++M++ S I C  VVLT+GTFLRG+IHIG  KIPAGR+G+ PS  
Sbjct: 121 GDAFDIEMDNDRVAAVIMKNGSRIPCGAVVLTSGTFLRGLIHIGSEKIPAGRVGEMPSLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  +     GRLKTGTPARLDG+TI W+  ++Q ADE  +PFSFMTD I N QIECG
Sbjct: 181 LSDTLSRLGLAMGRLKTGTPARLDGRTIDWNAVDRQAADEDPVPFSFMTDHILNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +TRT   +H+II +NI  SA+YSG I+  GPRYCPSIEDKI RFGER+GHQIFLEPEGL+
Sbjct: 241 VTRTTPASHKIIQDNIHLSAMYSGQIEGVGPRYCPSIEDKITRFGERDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q QFIRTIPGLE+V I++PGYAIEYDY++P+EL P+LE +KI 
Sbjct: 301 DYTIYPNGISTSLPAFVQEQFIRTIPGLEQVTILQPGYAIEYDYVDPRELKPSLECRKIP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGLVAG+N++  +   D + FSRT+SYIGVMIDDLTSKGV 
Sbjct: 361 GLFLAGQINGTTGYEEAGAQGLVAGLNASLYAGSADPLHFSRTESYIGVMIDDLTSKGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLTP+  K G +G  RQ+RF  ++ + + +R+L+K L
Sbjct: 421 EPYRMFTSRAEYRLSLRVDNADLRLTPVAQKAGILGRERQQRFTDFLSDLDSVRALMKEL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++    +   +   QDG+ R+ YE L+YPD ++Q L    P+  + ++ V E LQIE+S
Sbjct: 481 SISPSQAAKQGLKLNQDGQRRSVYELLAYPDMTLQALAEHWPELNRLNAKVAEVLQIEAS 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +  +IK +E R IP DFD+ SL  LSNELK+KL   +P N+ QA++++GM
Sbjct: 541 YAVYMQRQSADIVDIKRDEDRKIPDDFDFQSLSGLSNELKQKLEKARPENIAQAARVDGM 600

Query: 602 TP 603
           TP
Sbjct: 601 TP 602


>gi|317504353|ref|ZP_07962339.1| glucose inhibited division protein A [Prevotella salivae DSM 15606]
 gi|315664544|gb|EFV04225.1| glucose inhibited division protein A [Prevotella salivae DSM 15606]
          Length = 623

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/620 (40%), Positives = 369/620 (59%), Gaps = 9/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  +A++GA T LIT   + +G MSCNPA+GG+ KG +VREIDA
Sbjct: 4   NYDVIVIGGGHAGCEAAVASARMGAKTCLITMDMNKVGQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGRV D   IQFR+LN+ KGPAV  PR Q DR  +    +  + + +NLD+ Q EV
Sbjct: 64  LGGQMGRVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDNTDNLDIWQDEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + +    +    +      ++V+T GTFL G++HIG   I  GR  +   +    
Sbjct: 124 NELIVQNHEAIGVKTIWDVEFYAKSIVVTAGTFLNGLMHIGHKMIEGGRCAEPAVHHFTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  ++   + R+KTGTP R+D +++ ++  E+Q  D     FS++ +  T RQ+ C  T 
Sbjct: 184 SITRWGITSSRMKTGTPVRIDKRSVDFNAMEEQQGDHDFHQFSYLNEHRTLRQLPCWTTY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN   H  + + +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG NT+ 
Sbjct: 244 TNAAVHEELQKGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHQHPLFLEPEGENTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P ++Q   +  IP L +  I RPGYAIEYDY +P +L  +LE+K +SGLF
Sbjct: 304 MYLNGFSSSMPMDVQLAALHKIPALREAKIYRPGYAIEYDYFDPTQLKHSLESKILSGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R  SYIGV+IDDLT+KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAGGQGIVAGINAALKCSGSEPFVMQRDQSYIGVLIDDLTTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +    L    K   + 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTEKAYELGIATRERYDWWLQKKEAVQRLIDFCKDFPIK 483

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLVIER 535
           ++ ++S   ++            + ++ P  ++QNL  I P  ++           + E 
Sbjct: 484 AQEINSELEALGTTPLRAGCKLSDLIARPHLTLQNLSEIIPALKEAINLSENRKEEIAEA 543

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y  Y  R+ + A ++   E   I   F YS L  +S E ++KL  + P  L QA
Sbjct: 544 AEIQLKYQGYIEREKLIADKMHRLENIKIKGRFKYSELHEISTEGRQKLEKINPETLAQA 603

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +N+LL+ + +
Sbjct: 604 SRIPGVSPSDINVLLVLLGR 623


>gi|229586296|ref|YP_002844797.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia africae ESF-5]
 gi|259495851|sp|C3PM94|MNMG_RICAE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|228021346|gb|ACP53054.1| Glucose-inhibited division protein A [Rickettsia africae ESF-5]
          Length = 622

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 433/611 (70%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 LAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  +  +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNKNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|327403528|ref|YP_004344366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fluviicola taffensis DSM 16823]
 gi|327319036|gb|AEA43528.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fluviicola taffensis DSM 16823]
          Length = 623

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 379/623 (60%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIV+GGGHAGCEAA  AAKLG+S  L+T   +TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MLKNYDVIVVGGGHAGCEAANAAAKLGSSVLLVTMNMNTIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G V+D + IQFR+LN+ KGPA+  PRTQ DR  +    +  +    N+D  Q
Sbjct: 61  IDALGGGSGIVSDLSAIQFRMLNISKGPAMWSPRTQNDRMKFAEEWRLLLEQNPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               G   E   +  +       I   +VVLT GTFL G+IH+G+ +   GR+G+  S  
Sbjct: 121 DMSNGLIVEGGKVVGVRTSMGLSIYGKSVVLTNGTFLNGLIHLGEKQFGGGRIGEKGSTG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +    +   F++GR+KTGTP R+DG+++ + K E Q  D+    FS+   +    Q  C 
Sbjct: 181 ITEDLIALGFESGRMKTGTPPRIDGRSLDYSKMEIQEGDKNPSKFSYGNTEALKIQRPCH 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+  TH ++ E    S +++G IKS GPRYCPSIEDKI RF +R+ HQ+F+EPEG  
Sbjct: 241 ITYTSTLTHDLLREGFDRSPMFNGAIKSSGPRYCPSIEDKINRFADRDRHQLFVEPEGWK 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q + + +I G E   + RPGYAIEYDY  P +L  TLETK I 
Sbjct: 301 TVEIYVNGFSTSLPEDVQLRALHSIEGFENAKMFRPGYAIEYDYFPPTQLKHTLETKLIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAA QGL+AGIN+A K  + + +   R+D+YIGV+IDDL +KG  
Sbjct: 361 GLYFAGQINGTTGYEEAACQGLMAGINAALKVQEREPLILGRSDAYIGVLIDDLITKGTQ 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR DNAD RL P+ ++LG   +    R  + +     L   L+  
Sbjct: 421 EPYRMFTSRAEYRILLRQDNADIRLVPMAVELGLQDQEALDRVNRKVNAAKELIGALRKE 480

Query: 482 VLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-------LV 532
            ++ +  N     +      +       ++ P  +++++  +    R  +          
Sbjct: 481 GVSPEIANPILEGVGSAPLSQQIKLSSVITRPHVTMEHVLEMSEHVRGLAERLHVEHADA 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +I   Y  Y  R+   A ++   E  +IP   DY+S+ +LS E ++KL+ +KP  +
Sbjct: 541 VEQAEILLKYEGYIAREEEVALKLSRMETLVIPASIDYNSMKSLSLEARDKLTKIKPATI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS++ G++P+ +++LLI++ +
Sbjct: 601 GQASRVSGVSPSDISVLLIHLGR 623


>gi|227485740|ref|ZP_03916056.1| glucose-inhibited division protein A [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236295|gb|EEI86310.1| glucose-inhibited division protein A [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 643

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/620 (43%), Positives = 381/620 (61%), Gaps = 8/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+G GHAGCEA   AA+LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 24  SYDVVVVGAGHAGCEAGLAAARLGMKTLVLTTSMESIADMPCNPNIGGTGKGHIVREIDA 83

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R QAD+  Y   M++ +   +NLD+ + EV
Sbjct: 84  LGGEMAINIDKTFIQSRMLNTSKGPAVHSLRVQADKRKYHDEMKKVLE--DNLDLFEQEV 141

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N +   I S      ++     +++ TGT+L G I IG  +  +G  G S +  L +
Sbjct: 142 DKINYQDGKIVSCETVQGAIYETKAIIICTGTYLNGKILIGDYEKVSGPHGLSAATYLTD 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECG 241
           S  +  F   R KTGTPAR+   +I ++KT  Q  D+ +IPFSF+ +       RQ +C 
Sbjct: 202 SLREMGFSIRRFKTGTPARVHRDSINYEKTTVQEGDKEVIPFSFLNEGKDYTDRRQEDCF 261

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET +IIM+N+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL+
Sbjct: 262 LTYTTEETKQIIMDNLDRSPIYGGKIKGIGPRYCPSIEDKMVRFPDRDIHQVFIEPEGLS 321

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y  G+S++LP+E+Q +F +TI GLE V I+RP YAIEYD I+ +EL  TLE+K  S
Sbjct: 322 TKEMYVQGVSSSLPQEVQMEFYKTIIGLEDVKIMRPAYAIEYDMIDTRELKRTLESKAYS 381

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K    +     R+D+YIGV+IDDL ++G  
Sbjct: 382 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEEEFILDRSDAYIGVLIDDLVTEGTN 441

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RL+  G  +G + + R ++     ++       LK++
Sbjct: 442 EPYRMMTSRCEYRLTMRQDNADERLSKKGRDIGLVTDERYQKMLDKREKITSEIERLKNI 501

Query: 482 VLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           +LT K+ ++ ++            T YE +  P+ + QN     P+     S +   +Q 
Sbjct: 502 MLTPKDETNKALEELGSTPLNNGLTLYELIKRPEITYQNSVIFDPERSDLPSYISLSVQT 561

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q+ + ++ K  E + +  D DY+ +P L  E  EKL+ +KP ++ QAS+I
Sbjct: 562 EIKYEGYIKKQLKDIEKFKKLESKKLSHDIDYAKIPGLKKESAEKLNEIKPDSIGQASRI 621

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G++PA +N+LLI +K   +
Sbjct: 622 SGVSPADINVLLIRLKTGEL 641


>gi|157803242|ref|YP_001491791.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia canadensis str. McKiel]
 gi|166200608|sp|A8EXC3|MNMG_RICCK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157784505|gb|ABV73006.1| glucose-inhibited division protein A [Rickettsia canadensis str.
           McKiel]
          Length = 624

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/610 (52%), Positives = 424/610 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPGNLGEMSCNPAIGGIAKGILVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NL+++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLNILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + + ++V+ D S I C  ++LTTG+FL G+IHIG  KIPAGR+ +  S  L N
Sbjct: 123 EDIEIKSSKVKAVVLNDGSKIPCQKIILTTGSFLSGLIHIGSTKIPAGRVDEEASYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKRVGFKIARLKTGTPPRIDGLTIDYSKTVLQPGDKTPRPFSALTNIVDVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I++ GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEAIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q + I+TIPGLEK  I+RPGYAIEYDY++P+E+  TLETKKI GL+
Sbjct: 303 IYPNGISTSLPEEVQCKLIKTIPGLEKATILRPGYAIEYDYVDPREISITLETKKIMGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG+VAGIN+A           +R +SYIGVMIDDLT  G  EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIVAGINAALAVKNQPPFILTRANSYIGVMIDDLTIFGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT +G+ +G + ++R++ F K        R+LLK+L  T
Sbjct: 423 RMFTSRAEYRLSLRADNADLRLTELGINIGVVSKKRKEIFKKKCYNIEKTRNLLKTLSFT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  L    +   QDG  +T  +    P+F+I+    I P  ++ +S +++ L IE+ YA+
Sbjct: 483 TSKLVKIGVQVAQDGTYKTVLDLFKIPNFTIEQAIKIFPKLQEINSNILQLLYIEAKYAS 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 543 YLAKQQADINLFQNEEIQLIPKNIDYFKIPSISLEIREKLSYYKPTTIGIARRIPGITPA 602

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 603 AITAIIIYLK 612


>gi|168700225|ref|ZP_02732502.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gemmata obscuriglobus UQM 2246]
          Length = 611

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/623 (45%), Positives = 390/623 (62%), Gaps = 27/623 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV+V+G GHAG EAA  AA+LG  T L++     +  MSCNPAIGG+ KG +VRE
Sbjct: 4   LEYRFDVVVVGAGHAGTEAAMAAARLGLRTCLLSMNADAVAQMSCNPAIGGVAKGQIVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG+  DA+GIQFRVLN  KGPA+  PR QAD++LY+  M+R +  QENL + Q
Sbjct: 64  IDALGGVMGKCIDASGIQFRVLNASKGPAMHSPRAQADKKLYQFTMKRWVEDQENLTLRQ 123

Query: 122 GEVAGFNTEKN---------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             V G   E +          +  +V + ++      V+LTTGTFL+ ++H G+ K   G
Sbjct: 124 ELVEGLLLEPHADSASPATRRVVGVVARGDTRYLAPAVILTTGTFLKAIMHTGEAKTVGG 183

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R GD+ +  +  S     F+  R KTGTP RL+G+TI + K ++Q  D    PFSF T+K
Sbjct: 184 RAGDASAEGMSASLADAGFELARFKTGTPCRLNGRTIDFSKCQEQPGDPVPRPFSFSTEK 243

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           IT  Q+ C  T T    H +I  N+  + +YSG I   GPRYCPSIEDK+VRF +++ H 
Sbjct: 244 ITVPQVVCHSTETTAAVHDLIRANLHRAPMYSGQICGRGPRYCPSIEDKVVRFADKDSHL 303

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEGLNT   Y NGIST+LP+++Q   ++ IPGLE   ++R GYA+EYDY  P +L 
Sbjct: 304 LFLEPEGLNTREYYCNGISTSLPKDVQAAMLKLIPGLENAEVMRWGYAVEYDYAPPTQLH 363

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PTLETK ++GL+ AGQINGTTGYEEAAAQGLVAG+N+A K      +   R+ +YIGV+I
Sbjct: 364 PTLETKPVAGLYFAGQINGTTGYEEAAAQGLVAGLNAALKLKGEPALVLDRSAAYIGVLI 423

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLTP+G K+G +G     RF +  +  +
Sbjct: 424 DDLVTKGVDEPYRMFTSRAEYRLLLRHDNADRRLTPLGRKVGSVGVADWARFERKEKGIS 483

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS--S 530
            L+ +L+S                      +   ++   +     + + CP   ++    
Sbjct: 484 DLQGVLRSTK----------------SGGDSLATWVRRTEVEWSEVVARCPALAEWDARP 527

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V+E++ +E+ Y+ Y  RQ  E +  +  E R IP  FDY+ +  L +E +EKLS ++P 
Sbjct: 528 DVVEQVVLEAKYSGYIDRQAAEVERFQRLENRRIPDAFDYARVGQLRHEAREKLSRIRPV 587

Query: 591 NLLQASKIEGMTPAALNLLLIYI 613
           +L QAS+I G+TPA L +LL+Y+
Sbjct: 588 SLGQASRISGITPADLAMLLLYL 610


>gi|241206939|ref|YP_002978035.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860829|gb|ACS58496.1| glucose inhibited division protein A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 625

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/616 (59%), Positives = 462/616 (75%), Gaps = 1/616 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +DVIVIGGGHAG EAA+ AA+LGA TALITH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 1   MTDNVFDVIVIGGGHAGSEAASAAARLGAKTALITHRRDTIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LYRLAM   I +  +LD+I
Sbjct: 61  EIDAMDGLMGRVADVAGIQFRILNKKKGAAVRGPRTQADRKLYRLAMLAAIEATPDLDII 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+          ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G++PS 
Sbjct: 121 EGDAFDLEVVDGCVAGVIMKDGRTLKAPAVVLTTGTFLRGLIHIGSEKTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT  QIEC
Sbjct: 181 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEELVPFSFMTDTITTPQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+TRT   THRII++NI  SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FLEPEGL
Sbjct: 241 GVTRTTEATHRIIVDNIMRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D VYPNGIST+LP E+Q  FI+TIPGLE   I++PGYAIEYD+++P+EL  +LE K++
Sbjct: 301 DDDTVYPNGISTSLPAEVQAAFIKTIPGLETARILQPGYAIEYDHVDPRELTLSLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL AG+N+A +S+      FSRT+SYIGVMIDDLTS+GV
Sbjct: 361 RGLFLAGQINGTTGYEEAAAQGLAAGLNAALRSSDSHPFHFSRTNSYIGVMIDDLTSRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP+ M+LGC+   R +RF  Y  E +  R+LL+S
Sbjct: 421 TEPYRMFTSRAEYRLTLRADNADMRLTPLAMRLGCVSNARVQRFTSYRAEIDTSRALLQS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIE 539
           L LT        ++   DG+ RTAY+ LSYP++    L  + P+   +    + E L+IE
Sbjct: 481 LALTPNEARRAGLNINLDGQRRTAYDLLSYPNYDFVALRHVWPEKLGQIGPKIAEALEIE 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK KLS  +PF++ QA+ +E
Sbjct: 541 AGYSVYLDRQAAAIVDQQRDEQRQIPPDFNYDALSGLSNELKLKLSAARPFSIAQAAIVE 600

Query: 600 GMTPAALNLLLIYIKK 615
           GMTPAA+ LLL+++++
Sbjct: 601 GMTPAAVALLLVHLRR 616


>gi|313683438|ref|YP_004061176.1| glucose inhibited division protein a [Sulfuricurvum kujiense DSM
           16994]
 gi|313156298|gb|ADR34976.1| glucose inhibited division protein A [Sulfuricurvum kujiense DSM
           16994]
          Length = 624

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/617 (44%), Positives = 377/617 (61%), Gaps = 7/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EAA  +A++G +T LI+     +G+ SCNPA+GGL KGHLVRE+DA
Sbjct: 2   TYDVIVVGGGHAGIEAALASARMGQNTLLISILAEQVGATSCNPAVGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D AGIQFR+LN+ KGPAVRG R Q D + YR+  + +IL+  N+ +IQ  V
Sbjct: 62  LGGEMGLLTDEAGIQFRILNITKGPAVRGSRAQIDMDRYRVIARNKILTTPNMSLIQETV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E+ ++  +     +  R   V+LTTGTFL GV+HIG++   AGR G+ P+  L +
Sbjct: 122 NALIIEEGVVVGVRTHLLNEYRAKKVILTTGTFLNGVVHIGEITQEAGRFGEFPAKGLTD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           S  +   + GRLKTGT  R+D  +I +   E Q  DE   PFSF TD+     T +Q+ C
Sbjct: 182 SLREAGLNVGRLKTGTCPRVDSSSIDFSVMEIQDGDELPNPFSFRTDRAEFARTKKQLPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN ETH +I  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+  
Sbjct: 242 YIAYTNEETHSLIEGNFHRAPLFTGQIEGVGPRYCPSIEDKINRFRDKERHHLFIEPQTA 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q   I ++ G+E   I+R GYAIEYDY++P EL  TLETKK+
Sbjct: 302 ENTECYINGMSTSLPPDVQRAMIHSVHGMENAKIVRYGYAIEYDYVDPTELKHTLETKKV 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQ+NGTTGYEEAAAQG++AGIN+A      + +   R ++YIGV+IDDL +KG 
Sbjct: 362 KNLYCAGQLNGTTGYEEAAAQGMMAGINAALSLQGKEPLILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR + AD RL   G  LG I + + +R      +      LL+ 
Sbjct: 422 KEPYRMFTSRAEYRLLLREETADLRLGKYGHALGLIDDAQMERIETKRSQITEGLKLLEE 481

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            V T          SI  +      T  + +S   F +  L  + P   +    + E++ 
Sbjct: 482 TVYTPNKEFLAFLASIDEEHITDKLTGIQLVSRKSFELDKLVKLIPSFAELDPYIQEQIL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ YA Y  +Q  + + +       IP+ FD+ S+  LSNE+ +KL    P  L  AS+
Sbjct: 542 IEAKYARYVEKQSDDIERMNKMLHIAIPEGFDFRSVSGLSNEIVDKLYKFNPPTLQAASQ 601

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+TPAAL++L IYIK
Sbjct: 602 ISGITPAALDILHIYIK 618


>gi|238650523|ref|YP_002916375.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia peacockii str. Rustic]
 gi|259495852|sp|C4K176|MNMG_RICPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238624621|gb|ACR47327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia peacockii str. Rustic]
          Length = 622

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 433/611 (70%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT 
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITT 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 LAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQFIPKNLDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|15892007|ref|NP_359721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia conorii str. Malish 7]
 gi|21263671|sp|Q92JI3|MNMG_RICCN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|15619122|gb|AAL02622.1| glucose inhibited division protein A [Rickettsia conorii str.
           Malish 7]
          Length = 622

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/611 (52%), Positives = 434/611 (71%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGVPTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQAGIHYKMLNETRGPAVWGPRAQADRKLYKKAMYQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + I ++++ + S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKIEAVILNNGSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T+ +   QI C IT+
Sbjct: 183 TLKQIGFKLARLKTGTPPRIDGRTIDYSKTILQPGDKIPRPFSELTNIVNVSQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 LAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DN+D RLT +GM +G + E+R+K F K  ++   ++SLL +L L+
Sbjct: 423 RMFTSRSEYRLSLRADNSDLRLTELGMNIGVVSEKRKKIFTKKCEDIEKIKSLLNTLSLS 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P+F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPNFNVEQAIKIFPMLKETQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE + IPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQFIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRIPGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|326509425|dbj|BAJ91629.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 716

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/621 (41%), Positives = 371/621 (59%), Gaps = 4/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 56  LRERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 115

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL + +
Sbjct: 116 VDALGGDIGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAMEMRKVVESTQNLFIRE 175

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    KN  +  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+
Sbjct: 176 AMATEVMIGKNDSVEGVRTFFGMDFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASH 235

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+T RLKTGTP R+D +T+ + + E Q  DE +  FSF  +      Q+ 
Sbjct: 236 GLTENLQQLGFETDRLKTGTPPRIDRRTVDFSRLEAQHGDEEVGWFSFDPEFHTEREQMC 295

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  ETH+I+ +N+  +  Y G +++ GPRYCP+IEDKIVRF ++  HQ+FLEPEG
Sbjct: 296 CYLTRTTKETHQIVTDNLDETPTYGGWVEAKGPRYCPAIEDKIVRFKDKESHQVFLEPEG 355

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TK+
Sbjct: 356 RDVPELYLQGFSTGLPERLQLPLVRTLPGLENCVMLRPAYAVEYDYLPAYQCSRSLMTKR 415

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             GLF +GQINGTTGYEEAAAQG+V+GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 416 FEGLFFSGQINGTTGYEEAAAQGIVSGINAARHSDGKPLIVLERESSYIGTLIDDLVTKD 475

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+E+R+  R DNAD+RLTP G ++G I +RR + +          +  LK
Sbjct: 476 LREPYRMLTSRSEHRLLFRSDNADSRLTPFGREIGLIDDRRWELYKSKQARIKEEKERLK 535

Query: 480 SLVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              ++        T++S +   ++ T    L  P    + L          S +  + ++
Sbjct: 536 HTRVSGVEFAAEVTAVSNQPVKESSTLEAILKKPHVQYKLLDKHGYGNEHLSPIEKDCVE 595

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  Y  +  RQ  + ++I  +E R +P+D DY S+  LS E +EKLS ++P  L QA +
Sbjct: 596 IDIKYEGFIARQQSQLQQIINQEHRKLPEDLDYHSMLNLSLEAREKLSKVRPQTLGQAGR 655

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G++PA + +LLI ++    
Sbjct: 656 IGGVSPADMTVLLISMESTRR 676


>gi|255322782|ref|ZP_05363924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter showae RM3277]
 gi|255300124|gb|EET79399.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter showae RM3277]
          Length = 621

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/620 (43%), Positives = 370/620 (59%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDIIVVGGGHAGIEASLAAARMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               ++   I+ +     +  + S +++TTGTFL G+IH+G  K+ AGR+G+  + +L +
Sbjct: 122 TQILSQNGEITGVKTHLGNEYKTSKLIITTGTFLNGLIHVGFNKLEAGRVGELSAKNLSD 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GRLKTGT  R+D K+I +   E Q  DE   PFSF T      Q+ C I  
Sbjct: 182 SLRELGLEVGRLKTGTCPRVDAKSIDFSVLEIQGGDEDPSPFSFRTRDFAPTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN+ TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L    
Sbjct: 242 TNVTTHDIIRSNFDKAPLFTGQIEGVGPRYCPSIEDKINRFGDRDRHHLFVEPQTLEATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP E+Q   +R++ G E   I+R GYAIEYDY+ P EL  TLETKK  GL+
Sbjct: 302 YYINGFSTSLPYEVQVAMLRSVKGFENARIVRHGYAIEYDYVQPTELKHTLETKKARGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+A   +  +     R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAGAQGLMAGINAALALDGKEPFVLRRDEAYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNA  RL   G +LG + E   ++             LL    +T
Sbjct: 422 RMFTSRAEYRLLLREDNAVLRLGGYGRELGLLDEATFEKIEAIRSNLTRGLELLNGTEIT 481

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   ++    +   +  T  + ++   F+ + L  + P         +E++  E+ 
Sbjct: 482 PTKRNLELLASLDEEIISQNLTLQKIVARKSFTGEKLRKLDPFFEALDEASLEQILTEAK 541

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q  +   +K      IP+ F +  +  LSNE+ EKL    P  L  AS+I G+
Sbjct: 542 YQHYIAEQKKQIDRMKDMMSVKIPEGFSFRGISGLSNEVVEKLERFAPPTLFAASEISGV 601

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPAA+++L IYIK N  +  
Sbjct: 602 TPAAIDILHIYIKMNARESQ 621


>gi|119355878|ref|YP_910522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium phaeobacteroides DSM 266]
 gi|166222923|sp|A1BCG1|MNMG_CHLPD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119353227|gb|ABL64098.1| glucose inhibited division protein A [Chlorobium phaeobacteroides
           DSM 266]
          Length = 621

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/620 (43%), Positives = 375/620 (60%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEA   AA+ G S  LIT   S I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAVLAAARTGMSCLLITSDLSAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D  GIQFR+LN  KG A+  PR QADR LY + M++ I  Q+N+D++Q  V 
Sbjct: 62  GGEMAKAIDETGIQFRMLNKSKGAAMHSPRAQADRALYSVYMRKIIEEQDNIDLVQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G + E   +   ++    +I+  +V+L  GTFL G+IHIG    P GR + + P + L  
Sbjct: 122 GLDVESGAVRGAILPSGRIIKGKSVILCCGTFLNGLIHIGMNHFPGGRTIAEPPVSGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +     F  GRLKTGTP R+D +++ +   E+Q  D    PFSF TD + +R Q+ C +T
Sbjct: 182 NLQSLGFRAGRLKTGTPPRIDSRSVNYSLVEEQSGDPDPRPFSFHTDSLGHRAQVSCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T   TH ++      S ++SG ++  GPRYCPS+EDKI RF ++N H IFLEPEG  T+
Sbjct: 242 KTKETTHELLRTGFSRSPLFSGKVQGVGPRYCPSVEDKIFRFPDKNSHHIFLEPEGAETN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE V +IRPGYAIEYD+  P ++  TLETK I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLLALRSIPGLEHVKMIRPGYAIEYDFFFPYQIKNTLETKIIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++ K          R+ +YIGV+IDDL +K ++EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASLKIQNRKPFVLDRSQAYIGVLIDDLVTKDIIEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+RISLR DNAD RL  +G + G +      +    I     LR L  ++ L
Sbjct: 422 YRMFTSSAEHRISLRHDNADIRLCRMGHEAGTVDFSSFTKTEYKISAIRQLRQLCDTMKL 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
               + S     + +   +       L  P+   +NL  +  D R           V E+
Sbjct: 482 HPDQIISAMAGAAQQPPLQPIAISNLLKRPEIDFENLLVLSEDFRAGVNEITTDPDVFEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R ++  ++I   E   IP  F Y+++  LSNE +EKL++ KP  + QA
Sbjct: 542 VVIDLKYEGYLKRDLLMTEKIARLESHSIPGSFSYATVSGLSNEGREKLTLHKPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++LLI I +
Sbjct: 602 SRIPGVSPSDISVLLIKIGR 621


>gi|24217058|ref|NP_714539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Lai str. 56601]
 gi|59797872|sp|Q8EY59|MNMG_LEPIN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|24198471|gb|AAN51557.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 635

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 383/627 (61%), Gaps = 9/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE
Sbjct: 10  FPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVRE 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q
Sbjct: 70  VDALGGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQ 129

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +       I    V+LTTGTFL  ++HIG  +   GRM +     
Sbjct: 130 DTVEELIIENDQVIGVRTGRGFEIFTDHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C 
Sbjct: 190 LSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCF 249

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  
Sbjct: 250 ITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYE 309

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI 
Sbjct: 310 TSEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIK 369

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV 
Sbjct: 370 GLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVE 429

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRMFTSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +
Sbjct: 430 DPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQI 489

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L   +     L    I+  + G       FL  P+  I+++  + P+   +S L    L
Sbjct: 490 PLKPSDKFQNLLDQKGITNYKFG--MKLDSFLKRPEIKIKDIEFMIPEVSSWSDLEKSIL 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++E  Y  Y  R++   +         IP+D +Y  +  L  E  +KL   KP  L +AS
Sbjct: 548 EMEIKYEGYIKRELETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKAS 607

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEI 623
           +I G+ P+ ++L+L +IK    K  E+
Sbjct: 608 QISGVDPSDVDLILYHIK--GKKKQEV 632


>gi|45659306|ref|YP_003392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59797795|sp|Q72LR0|MNMG_LEPIC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|45602552|gb|AAS72029.1| glucose inhibited division protein A [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 635

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 384/627 (61%), Gaps = 9/627 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE
Sbjct: 10  FPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVRE 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q
Sbjct: 70  VDALGGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQ 129

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     
Sbjct: 130 DTVEELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C 
Sbjct: 190 LSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCF 249

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  
Sbjct: 250 ITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYE 309

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI 
Sbjct: 310 TSEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIK 369

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV 
Sbjct: 370 GLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVE 429

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRMFTSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +
Sbjct: 430 DPYRMFTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQI 489

Query: 482 VLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L   +     L    I+  + G       FL  P+  I+++  + P+   +S L    L
Sbjct: 490 PLKPSDKFQNLLDQKGITNYKFG--MKLDSFLKRPEIKIKDIEFMIPEVSSWSDLEKSIL 547

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           ++E  Y  Y  R++   +         IP+D +Y  +  L  E  +KL   KP  L +AS
Sbjct: 548 EMEIKYEGYIKRELETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKAS 607

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEI 623
           +I G+ P+ ++L+L +IK    K  E+
Sbjct: 608 QISGVDPSDVDLILYHIK--GKKKQEV 632


>gi|169351491|ref|ZP_02868429.1| hypothetical protein CLOSPI_02271 [Clostridium spiroforme DSM 1552]
 gi|169291713|gb|EDS73846.1| hypothetical protein CLOSPI_02271 [Clostridium spiroforme DSM 1552]
          Length = 620

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/622 (41%), Positives = 373/622 (59%), Gaps = 9/622 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA   A++   T LIT     +GS+ CN +IGG  KG +VREIDAL
Sbjct: 2   YDVIVVGGGHAGIEAALAPARMKQKTVLITANFDNVGSLPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD   +Q ++LN  KGP V+  R QAD++ Y   MQ  +  Q+NLD+I+G V 
Sbjct: 62  GGQMAKTADETYLQMKMLNTAKGPGVQSLRAQADKKAYPRYMQAVLKKQDNLDIIEGMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  +++ +   I   TV+LTTGT+L+  I  G  K  +G         L   
Sbjct: 122 DLMVEDNCVKGVILANGQEIIGKTVILTTGTYLKAEILCGDQKHASGPDDQEECKYLSTR 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
             +      RLKTGTP R++  ++ + KT  Q   +  + FS+ T+K      Q+ C +T
Sbjct: 182 LKELGLRIQRLKTGTPPRVEINSVDYSKTSLQPGSDAKLAFSYQTNKFIPIDEQVPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II EN+  S++Y G +   GPRYCPSIEDKIV+F ++  HQIFLEPE    +
Sbjct: 242 YTNEKTHKIIKENLHRSSMYGGYVSGVGPRYCPSIEDKIVKFSDKPQHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST+LP ++Q + IRTIPGLE   I++  YAIEYD I+P +L+P+LETK I  L
Sbjct: 302 TIYVQGFSTSLPHDVQEEMIRTIPGLEHCKILKYAYAIEYDAIDPLQLWPSLETKIIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA+QGL+AGIN+  K+   + +   R ++YIGVMIDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAASQGLIAGINATLKNQNKEPLILKRDEAYIGVMIDDLVTKGTEEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ +R DNAD RL   G  +G I +   +++   +       + L ++  
Sbjct: 422 YRMLTSRAEYRLLIRHDNADERLMKYGHDVGLISDDIYQQYLNKMSNIFNEIARLDTIRF 481

Query: 484 TSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           T K+  +     +   +  +  +A E +  P+   + +     DA   +    +R+ I  
Sbjct: 482 TPKHPINDVLEQLGSTRLNEGISAKELIKRPELDYEKILPFI-DAPDLNEEERKRITILI 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + M +A++ K  E++ IP+D DY+ +  L+ E K+KLS ++P  + QAS+I G
Sbjct: 541 KYKGYIDKAMRQAEKQKKMEEKKIPEDVDYNEISNLALEAKQKLSSIRPLTIGQASRISG 600

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           + PA +++LLIY+K+   K NE
Sbjct: 601 INPADISVLLIYLKQ---KYNE 619


>gi|303327868|ref|ZP_07358308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862229|gb|EFL85163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfovibrio sp. 3_1_syn3]
          Length = 646

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/630 (43%), Positives = 372/630 (59%), Gaps = 17/630 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D I+ GGGHAG EAA   A+LG S  LI+     +G +SCNPAIGGL KGH+VR
Sbjct: 1   MPDAGFDCIIAGGGHAGSEAAVALARLGFSVLLISGNLDRLGYLSCNPAIGGLAKGHMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MG  ADAAGIQFR LN+ KGPAVR  R Q DR+ Y+  +++ + +   L + 
Sbjct: 61  EIDALGGMMGLWADAAGIQFRTLNMSKGPAVRATRAQMDRDAYQRVLKKTLYATPGLRLW 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V    T+   ++ +            V+LTTGTFL G IHIG   +P GR+GD+P+ 
Sbjct: 121 QDTVTDVVTDAGRVTGVRTAQGLEFTARHVLLTTGTFLDGRIHIGLTNLPGGRLGDAPAL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S      + GRLKTGT  RL   +I + + E+Q  D     FSF        Q+ C
Sbjct: 181 GLSDSLRALGLELGRLKTGTTPRLLRSSIDFSRLEEQRGDTPPPAFSFHGPGPVLPQVSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T+  TH II      S +++G I+  G RYCPSIEDK+ RF +R  HQIFLEPEGL
Sbjct: 241 HITWTSGRTHEIIRGGFDRSPLFTGVIQGVGARYCPSIEDKVARFPQRERHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  VY NGIST+LP ++Q   +R+IPGLE   ++RPGYAIEYDY+NP +L PTLE+K +
Sbjct: 301 DSAEVYANGISTSLPLDVQMAMLRSIPGLEGAVMVRPGYAIEYDYVNPVQLRPTLESKNV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEAAAQGL A +N  R   +L      R  +Y+ V++DDL + G 
Sbjct: 361 PGLWLAGQINGTSGYEEAAAQGLWAALNIVRAEKELPPFAPGRDAAYMAVLVDDLVTLGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLTP+G  LG +G+   + F +  +    L+  L++
Sbjct: 421 QEPYRMFTSRAEHRLLLREDNADARLTPLGRDLGLVGDAHWRAFCEKRENAERLKKHLEN 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL---------------FSICPDA 525
           + + +      + +    G+  +  + L  PD  ++ L                 +  + 
Sbjct: 481 MRIPADKQDENNDAALPPGR--SLEDVLRRPDMDLERLAAVLAASPGPLAGLGAELAAEL 538

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            +    V   +Q +  YA Y  RQ          E   +P D DY+ +  LS E++EKLS
Sbjct: 539 ERCGRTVYGGVQTDIKYAGYLERQRALIARTARLEATALPSDLDYARVAGLSREVEEKLS 598

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P NL QA +I G+TPAA+  L I++ K
Sbjct: 599 RVRPLNLGQAGRISGVTPAAVACLEIHLHK 628


>gi|78189959|ref|YP_380297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium chlorochromatii CaD3]
 gi|123579142|sp|Q3AP21|MNMG_CHLCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78172158|gb|ABB29254.1| Glucose-inhibited division protein A subfamily [Chlorobium
           chlorochromatii CaD3]
          Length = 621

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/620 (43%), Positives = 391/620 (63%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEA   AA++GA+  LIT   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAILAAARMGATCLLITSDLTAIARMSCNPAIGGMAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KGPA+  PR QADR LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRLLNRSKGPAMHSPRAQADRTLYSLYMRTIIEREPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
              T+    + + +  + +I   + +LT GTFL G+IH+G      GR + + P   L  
Sbjct: 122 AIETKGECFAGVRITSSRVIEGKSAILTCGTFLNGLIHVGMNHFAGGRTIAEPPVVGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
           +     F  GRLKTGTP R+D ++I + K ++Q  D   I FSF +   + ++Q+ C IT
Sbjct: 182 NLCAHGFQAGRLKTGTPPRIDSRSIDYRKVDEQPGDIEPILFSFESKGALQSKQVSCFIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH I+ +  + S +++G ++  GPRYCPS+EDKI RF ++N H IFLEPEG++T+
Sbjct: 242 KTTEETHAILRKGFERSPLFTGKVQGIGPRYCPSVEDKIFRFPDKNSHHIFLEPEGIDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + + +IPGLE+V +IRPGYAIEYDY  P ++  TLET+ I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLEGLHSIPGLEQVKMIRPGYAIEYDYFYPHQIQATLETRLIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+  K  K + +  +R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINAVLKMRKHEPLILTRSDAYIGVLIDDLITKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G ++G + E R +   + I++ N +++LL  + L
Sbjct: 422 YRMFTSSAEHRLLLRHDNADIRLHEFGYRVGLLPEHRYQATRQKIEQINAVKTLLSQIRL 481

Query: 484 TSKNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
            S   +      +    T  +     L  P  ++  L +  P+          + LV E+
Sbjct: 482 ESGLANKLLQELEYGEVTGAQQVTTLLKRPRVTLAKLLATSPELHSQLSNISNNPLVYEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R  + A++I+  E   IP   DY ++  LSNE +EKL   +P N+ QA
Sbjct: 542 VEIDCKYEGYLKRDALVAEKIQRLEAHHIPALLDYHAIAGLSNEGREKLKKHRPENIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L++++ +
Sbjct: 602 SRILGVSPSDISILMVHLGR 621


>gi|157164575|ref|YP_001466158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter concisus 13826]
 gi|205831538|sp|A7ZBK0|MNMG_CAMC1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|112800397|gb|EAT97741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter concisus 13826]
          Length = 620

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 373/619 (60%), Gaps = 3/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y++IV+GGGHAG EA+  AA++G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   DYEIIVVGGGHAGIEASLAAARMGKQTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +E   I+ +    N+      V++TTGTFL G+IH+G  K+ AGR+G+  +  L +
Sbjct: 122 TEILSENGEITGVKTHLNNTYNAKKVIITTGTFLNGLIHVGFNKLEAGRVGELSAKDLSS 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +   + GRLKTGT  R+D KTI ++  EKQ  D + + FSF T   +  Q+ C I  
Sbjct: 182 SLRELGLNLGRLKTGTCPRIDAKTINFEILEKQDGDAKPVAFSFRTKNFSPTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+ L    
Sbjct: 242 TNETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTLEATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP E+Q Q +R++ G E   I+R GYAIEYDY+ P +L  +LETKK+ GL+
Sbjct: 302 YYINGFSTSLPYEVQVQMLRSVKGFENAKIVRHGYAIEYDYVEPTQLKHSLETKKVKGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AGIN+A   +  + +   R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAGAQGLMAGINAALSLDNKEPLILRRDEAYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR +NA  RL   G +LG + +          +        L    +T
Sbjct: 422 RMFTSRAEYRLLLREENAILRLGGYGHELGLLDDETFNEIENIRRNLKEGLEFLNETQIT 481

Query: 485 SKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   ++    +   +  +  + ++   F+ + L  +           ++++  E  
Sbjct: 482 PSKANLELLASLDEEPISQNVSLQKIVARKSFTAEKLRKLDERFVNLDDASMDQILTECK 541

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q  + +++K      IP++FD+ S+  LSNE+ EKL    P  L  AS+I G+
Sbjct: 542 YQHYISEQKNQIEKMKDMMDVKIPENFDFRSISGLSNEVVEKLEKFAPPTLFAASEISGI 601

Query: 602 TPAALNLLLIYIKKNTVKL 620
           TPAA+++L IYIK +  K 
Sbjct: 602 TPAAIDILHIYIKMSEKKA 620


>gi|260887477|ref|ZP_05898740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sputigena ATCC 35185]
 gi|260862764|gb|EEX77264.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sputigena ATCC 35185]
          Length = 633

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 370/614 (60%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IV+G GHAG EAA  AA LG  T L T     I  M CNP+IGG  K HLVREIDA
Sbjct: 11  EYDIIVLGAGHAGVEAALAAANLGCRTLLATLSLDNIALMPCNPSIGGPAKSHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M   AD A +Q+R+LN  KGPAV   R Q D++ Y+  M+     QE L+V Q   
Sbjct: 71  LGGAMAINADEAALQYRLLNTGKGPAVHALRAQEDKKAYQFRMKERCEQQEGLEVRQLLA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV +         V+L TGT+L+G I IG+     G  G   +  L  
Sbjct: 131 EKILIEDKEARGIVAETGEAYLARAVILATGTYLKGRIVIGEHTTSGGPNGQRAAGELSR 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTPARLD +++ + K + Q  DE    FSFMT+K T  Q+ C +T 
Sbjct: 191 SLRENGIKIMRFKTGTPARLDARSLDYRKMQLQPGDEGAQSFSFMTEKRTREQLPCYLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  NI  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEG +T+ 
Sbjct: 251 TNEKTHEIIRANIDRAPMANGIIEGIGPRYCPSIESKILRFPDKDRHQLFLEPEGWHTEE 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LP ++Q  F+ TIPGLEK  I+RPGYAIEYD I+P +L P+L  KKI GLF
Sbjct: 311 VYVQGMSTSLPVDVQEAFLHTIPGLEKARIMRPGYAIEYDCIDPLQLLPSLMFKKIRGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+            SR ++YIGV+IDDL +KG  EPY
Sbjct: 371 SAGQSNGTSGYEEAAAQGLMAGINAVHYIRGKAPFVLSRAEAYIGVLIDDLVTKGTEEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + E R ++F K        R  L++ VL 
Sbjct: 431 RMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVKEDRWQKFLKKKNGIIEARKTLENTVLH 490

Query: 485 S--KNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              +NL+   S        + +  +FL  P+     L S+     + +  V E+L+I   
Sbjct: 491 PSVENLARLESAGLAPIRTSTSLADFLRRPEMDYAKLASLF-GLERLAPEVEEQLEIAIR 549

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q  + + ++  E R +P D DY+ +P+L +E +EKL+ ++P ++ QAS+I G+
Sbjct: 550 YEGYIKKQQEQVERLEHLESRRLPVDLDYALVPSLRDEAREKLAAVRPLSVGQASRISGV 609

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLI++++
Sbjct: 610 SPADISVLLIWLEQ 623


>gi|237743015|ref|ZP_04573496.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 7_1]
 gi|260495537|ref|ZP_05815662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
 gi|229433575|gb|EEO43787.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 7_1]
 gi|260196879|gb|EEW94401.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
          Length = 633

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/628 (42%), Positives = 378/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D +  
Sbjct: 182 EDLPVSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +QI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 KQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTR----TAYEFLSYPDFSIQNLFSICPDARK---- 527
            +L    +   N     I  K+         T  E L  P+ + +++  I  + ++    
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGSTLLELLRRPEVTFEDIKYISEEIKEVDLQ 541

Query: 528 -FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPIDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|300024784|ref|YP_003757395.1| glucose inhibited division protein A [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526605|gb|ADJ25074.1| glucose inhibited division protein A [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 623

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/623 (54%), Positives = 433/623 (69%), Gaps = 1/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +R+YDVIV+GGGHAG EAAA AA++GA TAL+TH  +T+G MSCNPAIGGLGKGHLVR
Sbjct: 1   MTSRTYDVIVVGGGHAGTEAAAAAARMGARTALVTHSFATVGEMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVAD AGIQFR+LN  KGPAV GPRTQADR+LYR AMQ EI +   LDV+
Sbjct: 61  EIDALDGLMGRVADVAGIQFRLLNRSKGPAVHGPRTQADRKLYRQAMQAEIAAIPGLDVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G V     E   ++ +V  D   +    VVLTTGTFL G+IH+G+ KIPAGR G++P+ 
Sbjct: 121 EGGVEDLIVEDGRVAGVVTGDGRALSAGAVVLTTGTFLNGLIHMGEQKIPAGRAGEAPAL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +         GRLKTGTPARLDGK+I W   E Q AD+  +PFSF+T+++T  QI C
Sbjct: 181 KLSDRLYALGLKLGRLKTGTPARLDGKSIDWSGLEMQKADDEPVPFSFLTERVTTPQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  ETH II  N+  S ++SG I+S GPRYCPSIEDK+VRF +R+ HQIFLEPEGL
Sbjct: 241 GITYTTPETHDIIRANLARSPMFSGQIESIGPRYCPSIEDKVVRFADRSSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D +YPNG+ST+LP E+Q  F+RT+PGL  V I RPGYAIEYDY++P+EL   LE K++
Sbjct: 301 DDDTIYPNGVSTSLPVEVQDAFLRTMPGLANVVIKRPGYAIEYDYVDPRELTSGLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQG-LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             LFLAGQINGTTGYEEA AQG L     +       D    SRTD Y+GVM+DDL ++G
Sbjct: 361 PRLFLAGQINGTTGYEEAGAQGLLAGINAALAAGGAGDPFVVSRTDGYVGVMVDDLVTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+ LR DNAD RLT  G+ LGC+G  RQ  F    +  +   SLL 
Sbjct: 421 VSEPYRMFTSRAEFRLKLRADNADQRLTAAGIVLGCVGRARQAHFEAKTKALSEGLSLLN 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            L LT    +   ++  +DG+ RTA+E LS+PD S  +L  I P+    +  +  +L ++
Sbjct: 481 QLSLTPTEAARHGLTVNRDGRRRTAFELLSFPDISFDHLMPIWPELGGLAPQIAAQLGVD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YAAY  RQ  +  ++K +E   IP DFDY ++P+LS E+++KL   +P  + QA +IE
Sbjct: 541 ARYAAYLRRQDEDVAQLKRDEAVSIPVDFDYGAIPSLSAEVRQKLVQHRPGTIAQAGRIE 600

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           G+TPAAL  LL  +K    + + 
Sbjct: 601 GVTPAALLTLLARVKAGRARKSA 623


>gi|237742804|ref|ZP_04573285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 4_1_13]
 gi|229430452|gb|EEO40664.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 4_1_13]
          Length = 633

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/628 (43%), Positives = 378/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H+II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHKIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTR----TAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K+         T  E L  P+ + +++  I       D +
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGSTLLELLRRPEVTFEDIKYISEEIKGLDLK 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|194332860|ref|YP_002014720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prosthecochloris aestuarii DSM 271]
 gi|194310678|gb|ACF45073.1| glucose inhibited division protein A [Prosthecochloris aestuarii
           DSM 271]
          Length = 620

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/620 (44%), Positives = 376/620 (60%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEA    A++G    LIT   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAVLAGARMGHKCLLITSDLTAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN  KGPA+  PR QADR  Y   M+R I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDSTGIQFRMLNRSKGPAMHSPRAQADRNEYTQYMRRVIEREPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
               +       ++    +I C +++L  GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 DIRADNGTCRGAIISTGRIIECRSLILACGTFLNGLIHIGMSHYPGGRTLAEPPVEKLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F  GRLKTGTPAR+D +++ + K  +Q  D   + FSF T      Q+ C +T 
Sbjct: 182 NLASLGFKQGRLKTGTPARIDKRSVDYTKVSEQPGDTEPVHFSFTTAPARKEQLSCHLTA 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH+I+      S ++SG ++  GPRYCPSIEDKI RF ER  H IFLEPEG +T+ 
Sbjct: 242 TTEETHKILETGFDRSPLFSGKVQGVGPRYCPSIEDKIFRFKERKSHHIFLEPEGFDTNE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG ST+LPE+IQ + +R+IPGLE+V IIRPGYAIEYDY  P +L PT+ETK I  L+
Sbjct: 302 MYVNGFSTSLPEDIQIKAMRSIPGLEQVKIIRPGYAIEYDYFYPWQLHPTMETKVIENLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+A K +    +   R+++YIGV+IDDL +K   EPY
Sbjct: 362 FAGQINGTSGYEEAAAQGLMAGINAALKIDGKTPLTLKRSEAYIGVLIDDLITKETNEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTS AE+RI LR DNAD RLT  G   G       +R  +     + ++ LL+   +T
Sbjct: 422 RMFTSAAEHRIILRQDNADRRLTSYGHACGLQTSETMERLRQKEAAIHAIQELLREFRIT 481

Query: 485 S---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
               K LS  + S   D ++      L  P  S+Q++     + ++          V E+
Sbjct: 482 PDILKKLSKQNTSALPD-ESIRCINLLKRPHVSLQSIKDASSEFQERLNAISADQDVHEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R+ + A++I   E  +IP+ FDY  +  LS+E +EKL   +P  + QA
Sbjct: 541 IEIDIKYEGYIKREQLIAEKILRLEDNIIPRSFDYMKIKGLSSEGREKLIRHQPSTIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G+TPA +++L++ I +
Sbjct: 601 SRILGVTPADISVLMVKIGR 620


>gi|257067215|ref|YP_003153471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaerococcus prevotii DSM 20548]
 gi|256799095|gb|ACV29750.1| glucose inhibited division protein A [Anaerococcus prevotii DSM
           20548]
          Length = 628

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/622 (43%), Positives = 376/622 (60%), Gaps = 12/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+G GHAGCEA   A++LG  T ++T    +I  M CNP IGG GKGH+VREIDA
Sbjct: 9   SYDVVVVGAGHAGCEAGLAASRLGLKTLILTTSMESIADMPCNPNIGGTGKGHIVREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G M    D   IQ R+LN  KGPAV   R QAD+ LY   M++ +  +  +D+ + EV
Sbjct: 69  MGGQMALNIDKTFIQSRMLNTSKGPAVHSLRVQADKRLYHEEMKKTLEKE--VDLFEQEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              N E   I S    + ++     +++ TGT+L G I IG  +  +G  G S +  L +
Sbjct: 127 DKINYEDGKIVSCETVEGAIFETKALIIATGTYLNGKILIGDYEKVSGPHGLSAATYLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECG 241
           S  +  F   R KTGTPAR+D K++  +KTE Q  D+ +IPFSF+ +        Q  C 
Sbjct: 187 SLEELGFKLRRFKTGTPARVDRKSLHLEKTEIQKGDDEVIPFSFLNEGRDFSDRHQENCY 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET +IIM+N+  S IY G IK  GPRYCPSIEDK+VRF +R+ HQ+F+EPEGL 
Sbjct: 247 LTYTRPETKQIIMDNLDRSPIYGGHIKGVGPRYCPSIEDKMVRFPDRDIHQVFIEPEGLT 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           TD +Y  G+S++LP+E+Q  F +TI GLE V I+RP YAIEYD I+ + L+ TLE+K   
Sbjct: 307 TDEMYVQGVSSSLPQEVQFDFYKTIIGLEDVKIMRPAYAIEYDMIDTRNLYRTLESKDYE 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQING++GYEEAA QGL+AGIN+A K    D     R+D YIGV+IDDL ++G  
Sbjct: 367 GLYFAGQINGSSGYEEAAGQGLIAGINAALKIKGEDPFILDRSDGYIGVLIDDLVTEGTE 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+++R DNAD RLT    K+G + E R ++        +     LK++
Sbjct: 427 EPYRMMTSRCEYRLTMRQDNADQRLTERAYKIGLVSEERYQKMVDKRTAIDKEIERLKTV 486

Query: 482 VLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +LT K    T+   K+ G T      + ++ L  P+   + L    P+  K       + 
Sbjct: 487 MLTPKE--ETNKKLKELGTTPLNNGMSLHDLLKRPELDYEMLEVFDPERPKLPKFQQIQA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           Q E  Y  Y  +QM +  + K  E + + K+ DY  +P L  E  EKL+ ++P ++ QAS
Sbjct: 545 QTEIKYEGYIKKQMADIDKFKKLEGKKLRKNIDYFKIPGLKKESAEKLNDIQPESIGQAS 604

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G++PA +N+LLI +K   +
Sbjct: 605 RISGVSPADINVLLIRLKTGEL 626


>gi|302342875|ref|YP_003807404.1| glucose inhibited division protein A [Desulfarculus baarsii DSM
           2075]
 gi|301639488|gb|ADK84810.1| glucose inhibited division protein A [Desulfarculus baarsii DSM
           2075]
          Length = 630

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/618 (44%), Positives = 378/618 (61%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             ++VIV+GGGHAGCEAA  AA++G  T LIT     + ++SCNPA+GGL KGHLVREID
Sbjct: 7   ERFEVIVVGGGHAGCEAALAAARMGRQTLLITINLEHLAALSCNPAVGGLAKGHLVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M +  DA GIQFR+LN  KGPAV   R Q D + Y   M++ IL+Q  L V+  +
Sbjct: 67  ALGGEMAKNTDATGIQFRLLNQGKGPAVWSSRAQVDMDRYPRRMRKVILNQPRLWVLDAK 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
             G   +   +  ++      +    VVLTTGTFLRG+IH+G    PAGRMGD  +N+L 
Sbjct: 127 ARGLIVQSGRVGGVITDRGQSVSARAVVLTTGTFLRGLIHVGLKNWPAGRMGDPAANALS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +       + GRLKTGT  RLD +++       Q  DE    FSF++   T  Q  C IT
Sbjct: 187 DQLRALGLNLGRLKTGTCPRLDARSVDLASLPAQPGDETPRMFSFLSQGPTLEQRPCWIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T   THRII   +  S +Y+G I   G RYCPSIEDK+VRF +R  HQIFLEP+GL++ 
Sbjct: 247 HTTERTHRIIRGGLHESPMYAGVITGVGARYCPSIEDKVVRFPQRESHQIFLEPQGLDSG 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++YPNGI T+LP  +Q   + ++PG E   I+RPGYAIEYDY +P++L PTLE+K   GL
Sbjct: 307 LIYPNGIPTSLPLAVQEAMVHSLPGCENAFIVRPGYAIEYDYADPQDLKPTLESKIAPGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQGL AGIN+A            R+ +Y+ V++DDL +KG  EP
Sbjct: 367 YLAGQINGTSGYEEAAAQGLWAGINAALAVRGEGAFAPDRSQAYMAVLVDDLITKGTREP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+SLR DNAD RLT +G  +G + + R   F+         R LL ++ +
Sbjct: 427 YRMFTSRAEYRLSLREDNADLRLTELGRAVGLVDDERWAAFSAKQAALGQARQLLDAVRV 486

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERLQ 537
                   ++S    G   +  +A + L  P   +  L  + P           V E+L+
Sbjct: 487 NPSRQVLEALSELDTGALSRPLSAAQVLRRPGMDLAMLARLDPALEPLTTLPPEVAEQLR 546

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+SYA Y  ++  + +  +  E ++IP + DY+ +P LS E+ EKL+ ++P N+ QA +
Sbjct: 547 IEASYAGYVEQERQQVELFRAREAQVIPPELDYAQIPGLSREVVEKLARVRPANIGQAGR 606

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+TPAAL ++ ++  +
Sbjct: 607 ISGVTPAALAIVSLHATR 624


>gi|302340303|ref|YP_003805509.1| glucose inhibited division protein A [Spirochaeta smaragdinae DSM
           11293]
 gi|301637488|gb|ADK82915.1| glucose inhibited division protein A [Spirochaeta smaragdinae DSM
           11293]
          Length = 619

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 390/622 (62%), Gaps = 9/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R YD +VIGGGHAG EAA   A+L   T LIT     IG +SCNPA+GGL KG++VRE
Sbjct: 1   MVRDYDAVVIGGGHAGIEAALALARLSHRTLLITQSLDAIGRLSCNPAVGGLSKGNIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG + DA  IQFR+LN ++GPAV+ PR QAD+  Y L  +  +  Q  LD+ Q
Sbjct: 61  VDALGGEMGHLIDATMIQFRILNQRRGPAVQAPRAQADKFAYNLLAKETLEKQPGLDLYQ 120

Query: 122 GEVAGFNTEKN------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             V     E +       I  +       I   +VVLTTGTF+ G + IG  +  +GR+G
Sbjct: 121 DTVTDLVIEGDIALGGARIVGVRTDRGQEISTRSVVLTTGTFMEGKVFIGSWEASSGRLG 180

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L ++     F  GR+KTGTPAR+   ++ +DK E+Q  DE ++PFSF  D I  
Sbjct: 181 EPAAIGLGSALRAKGFHLGRMKTGTPARVAASSLDYDKMEEQKGDELMLPFSFSHDTIDR 240

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            +  C IT TN +TH +I EN+  S +Y G I   GPRYCPSIEDK+VRF +R  HQIF+
Sbjct: 241 PERSCWITYTNEKTHSLISENLGTSPLYGGKIVGKGPRYCPSIEDKVVRFPDRQRHQIFV 300

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+T+ +Y NGIS++LPE +Q QFI ++PGLE+  I+RPGYA+EYDYI+P++LFP+L
Sbjct: 301 EPEGLHTEEMYLNGISSSLPEWVQEQFIHSVPGLERAVIMRPGYAVEYDYIDPRQLFPSL 360

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           +TK ++GLF+AGQ NGT+GYEEAA QGL+AGIN++      D +  SR ++Y GV+IDDL
Sbjct: 361 QTKAVAGLFIAGQTNGTSGYEEAACQGLLAGINASLLMRGEDLLVLSRAEAYAGVLIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            + G  EPYRMFTSRAEYR++LR D AD RL P+G ++G   +   +   K ++    ++
Sbjct: 421 VTLGTEEPYRMFTSRAEYRLNLRHDTADRRLLPLGHRIGLQNDDAMEALNKRLEGEAAIK 480

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            LL S  L S   +   +S ++  K     + L  P+ SI  L  + P+   F    + R
Sbjct: 481 ELLASRRLRSSEAAGLDLSGQEGKK---FLDLLKVPEVSIDMLVPLQPELEAFPDKWLRR 537

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             ++  Y  Y  RQ  +    +  E   IP DF+++++  +SNE +EKL  ++P ++ QA
Sbjct: 538 AALDIRYEGYIRRQDEQVDRFQRMEGLKIPADFNWNTIEGISNESREKLKQIRPLSVGQA 597

Query: 596 SKIEGMTPAALNLLLIYIKKNT 617
           S+I G+  + + +L++ +++  
Sbjct: 598 SRISGVRSSDIAVLMVMLRRRR 619


>gi|256028336|ref|ZP_05442170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289766262|ref|ZP_06525640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289717817|gb|EFD81829.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
          Length = 633

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +QI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 KQIPCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVGIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTR----TAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K+         T  E L  P+ + +++  I       D +
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGESPIKDGSTLLELLRRPEVTFEDIKYISEEIKSVDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|330840115|ref|YP_004414695.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Selenomonas sputigena ATCC 35185]
 gi|329747879|gb|AEC01236.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Selenomonas sputigena ATCC 35185]
          Length = 628

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 370/614 (60%), Gaps = 4/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IV+G GHAG EAA  AA LG  T L T     I  M CNP+IGG  K HLVREIDA
Sbjct: 6   EYDIIVLGAGHAGVEAALAAANLGCRTLLATLSLDNIALMPCNPSIGGPAKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M   AD A +Q+R+LN  KGPAV   R Q D++ Y+  M+     QE L+V Q   
Sbjct: 66  LGGAMAINADEAALQYRLLNTGKGPAVHALRAQEDKKAYQFRMKERCEQQEGLEVRQLLA 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      IV +         V+L TGT+L+G I IG+     G  G   +  L  
Sbjct: 126 EKILIEDKEARGIVAETGEAYLARAVILATGTYLKGRIVIGEHTTSGGPNGQRAAGELSR 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTPARLD +++ + K + Q  DE    FSFMT+K T  Q+ C +T 
Sbjct: 186 SLRENGIKIMRFKTGTPARLDARSLDYRKMQLQPGDEGAQSFSFMTEKRTREQLPCYLTY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  NI  + + +G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEG +T+ 
Sbjct: 246 TNEKTHEIIRANIDRAPMANGIIEGIGPRYCPSIESKILRFPDKDRHQLFLEPEGWHTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LP ++Q  F+ TIPGLEK  I+RPGYAIEYD I+P +L P+L  KKI GLF
Sbjct: 306 VYVQGMSTSLPVDVQEAFLHTIPGLEKARIMRPGYAIEYDCIDPLQLLPSLMFKKIRGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+            SR ++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLMAGINAVHYIRGKAPFVLSRAEAYIGVLIDDLVTKGTEEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT  G  +G + E R ++F K        R  L++ VL 
Sbjct: 426 RMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVKEDRWQKFLKKKNGIIEARKTLENTVLH 485

Query: 485 S--KNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              +NL+   S        + +  +FL  P+     L S+     + +  V E+L+I   
Sbjct: 486 PSVENLARLESAGLAPIRTSTSLADFLRRPEMDYAKLASLF-GLERLAPEVEEQLEIAIR 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q  + + ++  E R +P D DY+ +P+L +E +EKL+ ++P ++ QAS+I G+
Sbjct: 545 YEGYIKKQQEQVERLEHLESRRLPVDLDYALVPSLRDEAREKLAAVRPLSVGQASRISGV 604

Query: 602 TPAALNLLLIYIKK 615
           +PA +++LLI++++
Sbjct: 605 SPADISVLLIWLEQ 618


>gi|161170270|gb|ABX59240.1| division protein A [uncultured marine bacterium EB000_55B11]
 gi|297183799|gb|ADI19922.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 627

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/620 (56%), Positives = 436/620 (70%), Gaps = 1/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG +AA  A + GA TALITHK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 8   KQYDVIVIGGGHAGADAAHAAWRSGAKTALITHKFKTIGEMSCNPAIGGLGKGHLVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRVAD +GIQFR+LN KKGPAV+GPRTQADR LYR AMQ+E +    LD+I+ E
Sbjct: 68  ALDGLMGRVADKSGIQFRLLNRKKGPAVQGPRTQADRALYRTAMQKEFIGAAGLDIIESE 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+      N +  +++ D S I   TVVLTTGTFLRG+IHIG +  P GRMGD P+  L 
Sbjct: 128 VSDLIMRNNKVRGVILSDKSQINAPTVVLTTGTFLRGIIHIGDVSRPGGRMGDKPAIPLA 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGI 242
                F    GRLKTGTP RLD ++I W+  E Q AD+    FSF++ K    RQI+CGI
Sbjct: 188 ERLDSFGLPLGRLKTGTPPRLDARSINWNVLETQSADDDPALFSFLSKKSDIPRQIKCGI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  SA+YSG I   GPRYCPSIEDKIVRF E++ HQ+FLEPEGLN 
Sbjct: 248 THTNTNTHSIIQENLSKSAMYSGKIDGVGPRYCPSIEDKIVRFSEKDSHQVFLEPEGLND 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LPE++Q++++ ++ GLE   II+PGYAIEYDY++P+ L  TLE K I G
Sbjct: 308 HTIYPNGISTSLPEDVQNEYVHSMLGLENAKIIQPGYAIEYDYVDPRALKHTLELKDIGG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+AR +   D I F R  +YIGVMIDDL ++GV E
Sbjct: 368 LYLAGQINGTTGYEEAAAQGLVAGLNAARAALGKDSIIFDRAQAYIGVMIDDLVTRGVSE 427

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G + G + E+RQ  F K +   +  + LL S +
Sbjct: 428 PYRMFTSRAEYRLSLRADNADQRLTNLGFECGLVSEKRQYIFEKKMDAIDKAKILLNSYL 487

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +T        IS KQDG  R+A E LS+ D S   L  + PD  K +  V ++L+ ++ Y
Sbjct: 488 ITPTQAKKAGISIKQDGIRRSAMELLSFKDVSFDKLGCMWPDLSKINQEVRDQLEKDAIY 547

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ      ++ +EK +IP++F+YS +  LSNELK+KL   +P +L QA +IEGMT
Sbjct: 548 INYIDRQSAAVNAMRKDEKLIIPENFNYSDISGLSNELKQKLMHSRPTSLAQAGRIEGMT 607

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA L L+L  I+K  VK   
Sbjct: 608 PAGLALILTSIRKFDVKRTA 627


>gi|51473287|ref|YP_067044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia typhi str. Wilmington]
 gi|81170574|sp|Q68XT0|MNMG_RICTY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|51459599|gb|AAU03562.1| glucose inhibited division protein A [Rickettsia typhi str.
           Wilmington]
          Length = 621

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/610 (52%), Positives = 421/610 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D AGI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++ G+V
Sbjct: 63  LDGLMGFVIDKAGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + + ++++ +   I C  VVLTTGTFL G IHIG +KIPAGR+ + PS  L N
Sbjct: 123 EDIQIKSSKVEAVILNNGIKIFCQKVVLTTGTFLSGFIHIGSMKIPAGRIYEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+
Sbjct: 183 TLKRLGFKIARLKTGTPPRIDGRTIDYSKTTLQQGDQIPRPFSELTDAIDVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG IK  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    
Sbjct: 243 TTAETHDIIRENLDKSAMYSGQIKGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP+EIQ++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPKEIQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINITLETKKITGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A      +    +R  SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALSVKDQEPFILTRATSYIGVMIDDLTTSGTVEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +G+ +G + E+R+  F K        + LL  L LT
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGINIGVVTEKRKNIFTKKCNNIEKTKLLLNKLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  L+   I   QDGK +T  +    P F+++    I P  RK ++ +++ L IE+ YA+
Sbjct: 483 TSKLAKIGIQVAQDGKYKTVLDLFKIPTFNVEQAIKIFPILRKQNNNILQLLYIEAKYAS 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 543 YLTRQYADINLFQSEEIQLIPKNIDYFKIPSISLEIQEKLSYHKPTTIGVARRISGITPA 602

Query: 605 ALNLLLIYIK 614
           A+  ++IY+K
Sbjct: 603 AIMAIIIYLK 612


>gi|126662719|ref|ZP_01733718.1| glucose-inhibited division protein A [Flavobacteria bacterium
           BAL38]
 gi|126626098|gb|EAZ96787.1| glucose-inhibited division protein A [Flavobacteria bacterium
           BAL38]
          Length = 623

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/623 (41%), Positives = 374/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLNQYDVIVVGAGHAGCEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  + +  NLD  
Sbjct: 61  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFSDEWRTMLENTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG  ++   I  +       I+ ++VVLT GTFL G+IHIG  +   GR G+S S 
Sbjct: 121 QEMVAGLLSDNGKIVGVKTSLGVEIKSTSVVLTNGTFLNGLIHIGDKQFGGGRAGESASF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +K  F++GR+KTGTP R+DG+++ + K  +Q  DE    FS+         Q  
Sbjct: 181 GITEDLVKLGFESGRMKTGTPPRVDGRSLDFSKMSEQPGDEVPEKFSYSNLTAPLKTQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ++ T+LE H I+ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EPEG
Sbjct: 241 CWMSYTSLEVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKERHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T   Y NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WTTCEYYINGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLQHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN+A K    +     R ++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAASQGLMAGINAALKVQNREPFILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP   ++G   E R  R  +   + + + +  +
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPKAFEIGLAKEERLIRMEQKFSQSDAMVNFFR 480

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
              L  +  +    +       +    ++  S P   +++           +       V
Sbjct: 481 ETSLKPEEANPILEAKGSAPMSQPDKMFKVFSRPQLDLEDFRKFKKVAAYIEEHDLDQEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +I+  Y+ Y  ++   A ++   E  +IP +F++  + ++S E K+KL+ ++P  +
Sbjct: 541 VEQAEIQVKYSGYIEKEKNNADKLTRLEDMVIPDNFNFDKIQSISIEAKQKLNKIRPRTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++LLIY+ +
Sbjct: 601 AQASRISGVSPSDISVLLIYMGR 623


>gi|254303504|ref|ZP_04970862.1| glucose-inhibited cell division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323696|gb|EDK88946.1| glucose-inhibited cell division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 633

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGKKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D  +++ FS  T   + ++ 
Sbjct: 182 EDLPLSLEKVGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDKSQVLKFSNRTTDKEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II  + + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIKNSKERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + I+ + G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIKNLQGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTIDNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ IG +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKIGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N        K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILTKTSVGPSNPRVNETLLKRGENPIKDGSTLLELLRRPEVTFKDIEYISEEIKGVDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|114769774|ref|ZP_01447384.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
 gi|114549479|gb|EAU52361.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
          Length = 621

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/620 (56%), Positives = 436/620 (70%), Gaps = 1/620 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGGHAG +AA  A + GA TALITHK  TIG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQYDVIVIGGGHAGADAAHAAWRSGAKTALITHKFKTIGEMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMGRVAD +GIQFR+LN KKGPAV+GPRTQADR LYR AMQ+E +    LD+I+ E
Sbjct: 62  ALDGLMGRVADKSGIQFRLLNRKKGPAVQGPRTQADRALYRAAMQKEFIGVAGLDIIESE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+      N +  +++ + S I   TVVLTTGTFLRG+IHIG +  P GRMGD P+  L 
Sbjct: 122 VSDLIMCNNKVRGVILSNKSQINAPTVVLTTGTFLRGIIHIGDVSRPGGRMGDKPAIPLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGI 242
                F    GRLKTGTP RLD ++I W+  E Q AD+    FSF++ K    RQI+CGI
Sbjct: 182 ERLDSFGLPLGRLKTGTPPRLDARSINWNVLETQSADDDPALFSFLSKKSDIPRQIKCGI 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II EN+  SA+YSG I   GPRYCPSIEDKIVRF E++ HQ+FLEPEGLN 
Sbjct: 242 THTNTNTHSIIQENLSKSAMYSGKIDGVGPRYCPSIEDKIVRFSEKDSHQVFLEPEGLND 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LPE++Q++++ ++ GLE   II+PGYAIEYDY++P+ L  TLE K I G
Sbjct: 302 HTIYPNGISTSLPEDVQNEYVHSMLGLENAKIIQPGYAIEYDYVDPRALKHTLELKDIGG 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+AR +   D I F R  +YIGVMIDDL ++GV E
Sbjct: 362 LYLAGQINGTTGYEEAAAQGLVAGLNAARAALGKDSIIFDRAQAYIGVMIDDLVTRGVSE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLT +G + G + E+RQ  F K +   +  + LL S +
Sbjct: 422 PYRMFTSRAEYRLSLRADNADQRLTNLGFECGLVSEKRQYIFEKKMDAIDKAKILLNSYL 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +T        IS KQDG  R+A E LS+ D S   L  + PD  K +  V ++L+ ++ Y
Sbjct: 482 ITPTQAKKAGISIKQDGIRRSAMELLSFKDVSFDKLGCMWPDLSKINQEVRDQLEKDAIY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ      ++ +EK +IP++F+YS +  LSNELK+KL   +P +L QA +IEGMT
Sbjct: 542 INYIDRQSAAVNAMRKDEKLIIPENFNYSDISGLSNELKQKLMHSRPTSLAQAGRIEGMT 601

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA L L+L  I+K  VK   
Sbjct: 602 PAGLALILTSIRKFDVKRTA 621


>gi|83950774|ref|ZP_00959507.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
 gi|83838673|gb|EAP77969.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
          Length = 621

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/617 (54%), Positives = 437/617 (70%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIV+GGGHAG +AA  AA++GA TAL+T    +IG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MKHDFDVIVVGGGHAGADAAHAAARMGARTALVTLTFESIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  MQRE+    NL +++
Sbjct: 61  IDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYREEMQREMRDCPNLTIVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE A F      +  + + D S I  S VVLTTGTFLRG+IHIG++  P GRMGD PS  
Sbjct: 121 GEAADFLMSGAEVRGVRLADGSEISASAVVLTTGTFLRGLIHIGQVSRPGGRMGDKPSVK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L     +F    GRLKTGTP RLDG TI W   E Q  D+    FSF++ K++ +QI CG
Sbjct: 181 LAERIDQFGLPLGRLKTGTPPRLDGTTIDWSDLEVQPGDDDPTLFSFLSSKVSAQQISCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II +NI  SA+YSG I+  GPRYCPSIEDKIVRF E++ HQ+FLEPE L+
Sbjct: 241 ITHTNEQTHEIIEKNIGKSAMYSGRIEGVGPRYCPSIEDKIVRFAEKSSHQVFLEPESLS 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            +V+YPNGIST+LPE+IQH ++R+I GLE V I++PGYAIEYDY++ + L   L  + + 
Sbjct: 301 DNVIYPNGISTSLPEDIQHDYVRSIKGLENVTILQPGYAIEYDYVDSRALDSRLAVRDVP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D I FSR++SYIGVM+DDL ++GV 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAAAVALGRDPITFSRSNSYIGVMVDDLITRGVS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP+G+++GC+G  R++ F   +      R  ++S+
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADQRLTPLGIEVGCVGAERKQAFEAKMSALAEARQDMESV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           V T K L +   +  QDGK R  YE L+   F    L ++ P+         ++L  ++ 
Sbjct: 481 VFTPKELVTAGHAVNQDGKRRNGYELLALQQFDFDALVALRPEWGAIDEASRDQLSKDAM 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +   +K +E++ IP DFDY ++  LSNELK KL+  +P N+ QA +I+GM
Sbjct: 541 YANYILRQERDVAVLKRDEQQRIPTDFDYMAMEGLSNELKMKLNAARPDNIGQAGRIDGM 600

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAAL LLL  ++++  
Sbjct: 601 TPAALTLLLAKVRQSRR 617


>gi|313892286|ref|ZP_07825879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister microaerophilus UPII 345-E]
 gi|313119424|gb|EFR42623.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dialister microaerophilus UPII 345-E]
          Length = 624

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/619 (41%), Positives = 380/619 (61%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA+LGA T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARLGARTLLFTISLENVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN+ KGPAV   R Q+D+  Y    +  + + +NL++ Q ++
Sbjct: 66  LGGQMGIAADETAIQMRMLNLGKGPAVYALRAQSDKGAYHRYFKSILENTDNLELKQAQI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ + + + R   V+L TGT+L   I +G+     G  G  PS  L  
Sbjct: 126 MDIVVEDGKCKGVITEFDEIYRSKAVILCTGTYLDSRIIVGEYMYTGGPNGMRPSVGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   D  R KTGTP+R+DG+++ +D  + +  D+    FSF++++      +C ++ 
Sbjct: 186 NLKKHGIDILRFKTGTPSRVDGRSLNYDHMKLEEGDKENHAFSFLSERKDRNIKDCYLSY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+I+ +N+  S IYSG I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNENTHKILRDNLHRSPIYSGKIHGVGARYCPSIEDKVVRFADKDKHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F++TIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLKTIPGFENVKVMRPAYAIEYDLLDPLQLYPTLEVIKMEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K    +    +R ++YIG +IDDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLMAGINAALKIQGKEPFILARHEAYIGTLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G K+G + E R K F +  +++      + +   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGYKIGLVNEERYKHFIERKRKFEEAMDYITTKRFT 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   + ++         T   A + L  P+ + +++       ++F +  +E ++I   
Sbjct: 486 PKEDVNKALEELGTTPLTTGIGADKILKRPEITYKDMVEKL-GCKEFDAEAVEEMEITVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ    K+ +  E + IP+D D+  L  +S E ++KL+ +KP +L QAS+I G+
Sbjct: 545 YEGYITRQENAIKKAEKMENKKIPQDMDFMKLEGISIEARQKLTKIKPLSLGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA + +L++Y+KK   + 
Sbjct: 605 SPADIAILMVYVKKYKGEK 623


>gi|254424794|ref|ZP_05038512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7335]
 gi|196192283|gb|EDX87247.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. PCC 7335]
          Length = 629

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/625 (40%), Positives = 368/625 (58%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DV+V+G GHAGCEAA  AA+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 5   FSDQFDVVVVGAGHAGCEAALAAARLGCRTLLLTMNLDRIAWQPCNPAVGGPAKSQLAHE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 65  VDALGGEIGKIADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKSVVENQENLILRE 124

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G            I  I         C   +LTTGTFL G I +GK  + AGR G+  + 
Sbjct: 125 GMATDLVLGDRGEIIGIETHFGMTFGCQAAILTTGTFLNGTIWVGKKSLSAGRAGEPAAI 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            +  +  +  F+T RLKTGTPAR+D +++ + + E+Q  D  +  FSF  +    R QI 
Sbjct: 185 GMSETLSRLGFETSRLKTGTPARVDKRSVDYSRLEEQPGDPNVRWFSFDPEVWQEREQIP 244

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT   TH+++ +N+  S +Y G +++ GPRYCP IEDKIVRF ++  HQIF+EPEG
Sbjct: 245 CYMTRTTAATHQLVRDNLHLSPVYGGWVEAKGPRYCPCIEDKIVRFADKESHQIFIEPEG 304

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +   +Y  G ST LPE +Q   + T+PGLE   ++RP YA++YDYI   + FPTL TKK
Sbjct: 305 RDYPELYIQGFSTGLPEHLQVDMLHTLPGLENCTMLRPAYAVDYDYIPATQCFPTLMTKK 364

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAA QGLVAGIN+AR     + I F R  SY+G +IDDL +K 
Sbjct: 365 VEGLFCAGQINGTTGYEEAAGQGLVAGINAARLVQAKELIVFPREGSYLGTLIDDLCTKD 424

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYR+ TSR+EYR+ LR DNAD RLTP+G ++G I +RR + + +        +  L 
Sbjct: 425 LREPYRVLTSRSEYRLILRSDNADQRLTPLGREIGLIDDRRWQLYQQKQANIIAEKERLH 484

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           +  +  +      I   + ++   + T  + +  P F  ++L S     +  ++   E  
Sbjct: 485 TERVKEQTEVGQQIYADTQQKIKGSVTLADLIRRPKFHYEHLESYGLGNQALTTAEKEGA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y+ Y  RQ  +   +  +  R +P+D DY ++  LS E +EKL+ +KP  + QA+
Sbjct: 545 EIDIKYSGYIQRQQKQIDLVSRQTNRSLPQDLDYMTVETLSMESREKLNKVKPLTVGQAT 604

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G+ PA +N LL++++    + +
Sbjct: 605 RIGGVNPADVNALLVFLEVRDRQAS 629


>gi|255037550|ref|YP_003088171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dyadobacter fermentans DSM 18053]
 gi|254950306|gb|ACT95006.1| glucose inhibited division protein A [Dyadobacter fermentans DSM
           18053]
          Length = 620

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/620 (43%), Positives = 375/620 (60%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAGCEAAA AA +G+S  LIT    TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MFQEYDVIVVGAGHAGCEAAAAAATMGSSVLLITMNMHTIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G V+D   IQFR+LN+ KGPA+  PR Q+DR  +    +  + +  N+D  Q
Sbjct: 61  IDALGGQSGIVSDKTMIQFRMLNLSKGPAMWSPRCQSDRVRFAEEWRSILENNPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   +  +V      IR   VVLT GTFL G+IHIG+     GR G+  +  
Sbjct: 121 DTAKNIIVEDGKVCGVVTSLGIQIRSKAVVLTNGTFLNGLIHIGEKNFGGGRTGEKSATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L    +   F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+   K   +Q  C 
Sbjct: 181 LTEQLVTLGFEAGRMKTGTPPRVDGRSLDYSKMEEQPGDEVPAKFSYTDTKPLAKQRSCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN E H ++    + S ++SG IK  GPRYCPS+EDKI RF +++ HQIF+EPEG +
Sbjct: 241 ITYTNQEVHDVLKTGFEKSPMFSGRIKGLGPRYCPSVEDKINRFADKDRHQIFVEPEGWD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY NG ST+LPE++Q+  +R IPG E   + RPGYAIEYDY  P +L  TLET  + 
Sbjct: 301 TVEVYVNGFSTSLPEDVQYAALRKIPGFENAKMFRPGYAIEYDYFPPTQLKSTLETHLVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA QGL+AGIN+ R  N LD     R+++YIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAACQGLMAGINAHRNVNDLDPFVLKRSEAYIGVLIDDLINKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR  LR DNAD RLT  G ++G   + R +   K  +E   + + L + 
Sbjct: 421 EPYRMFTSRAEYRTLLRQDNADLRLTEKGYEIGLASDERVEAVRKKKRETEEVIAKLNAT 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFS----ICPDARKFSSLVIER 535
            LT   ++    +I   Q  +     + L  P  SI  L      +     ++++  +++
Sbjct: 481 KLTPDEINPALEAIGTAQIREKIAVAQLLRRPQISIDQLLEASAVVTELLAEYANDSVQQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y +Y  ++M+   ++   E   I ++F+Y  + +LS E +EKL   +P  + QA
Sbjct: 541 AEINLKYDSYIEKEMLLVDKMNKLENLAIVENFNYDGVTSLSFEGREKLKRTRPSTIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L++YI +
Sbjct: 601 SRISGVSPSDISVLMLYIGR 620


>gi|209966079|ref|YP_002298994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodospirillum centenum SW]
 gi|209959545|gb|ACJ00182.1| glucose-inhibited division protein A [Rhodospirillum centenum SW]
          Length = 619

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/585 (51%), Positives = 394/585 (67%), Gaps = 1/585 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+  TIG MSCNPAIGGLGKGHLVREIDALDGLM RV D  GIQFRVLN  KGPAVR
Sbjct: 31  LLTHRIETIGEMSCNPAIGGLGKGHLVREIDALDGLMARVIDQGGIQFRVLNRSKGPAVR 90

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVV 151
           GPR QADR LYR AMQ  + +Q  LD+I   V     +       +   D   IR   VV
Sbjct: 91  GPRAQADRRLYREAMQAALRAQPGLDLIAAAVEDLLLDAAGACCGVRTADGEEIRAGAVV 150

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LTTGTFLRG+IHIG+ +IPAGR+G++P+  L ++  +  F  GRLKTGTPARLDG++I W
Sbjct: 151 LTTGTFLRGLIHIGERRIPAGRVGEAPALGLSDTLARLGFPLGRLKTGTPARLDGRSIDW 210

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
              E Q  D+   PFS +T++IT  Q+ C IT T    H +I  N+  + IYSG I+S G
Sbjct: 211 AGLESQPGDDPPPPFSTLTERITTPQVACAITWTTPAVHALIRANLHRAPIYSGQIESTG 270

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRF ++  HQIFLEPEGL+ D VYPNGIST+LPEE+Q + +  IPGLE+
Sbjct: 271 PRYCPSIEDKVVRFADKERHQIFLEPEGLDDDTVYPNGISTSLPEEVQREMLAAIPGLER 330

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             ++RPGYAIEYD+++P+EL  TLETK++  LFLAGQINGTTGYEEAAAQGL+AG+N+A 
Sbjct: 331 AVMLRPGYAIEYDFVDPRELTATLETKRLPRLFLAGQINGTTGYEEAAAQGLMAGVNAAL 390

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
                +     R + YIGV+IDDL ++G  EPYRMFTSRAEYR+ LR DNAD RLTP G+
Sbjct: 391 AVAGGEPFVLDRAEGYIGVLIDDLITRGTTEPYRMFTSRAEYRLLLRADNADQRLTPRGL 450

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
            +G +G RR + F +        R+L  SL  T   L+   I   +DG  RT  + L YP
Sbjct: 451 SVGVVGSRRAEAFQQKADALAAARALATSLAATPNELARHGIHVNRDGVRRTVLDLLRYP 510

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
           +  I  L ++ P+     + + E+++I+  YA Y  RQ  + +  + +E   +P D D  
Sbjct: 511 EVDIARLAAVWPELAALPAAIAEQVEIDGKYAGYLERQEADIRAFRKDEALGLPADLDPD 570

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++ +LS E+++KL  ++P  L  A++I GMTPAAL  LL ++K+ 
Sbjct: 571 AIASLSAEIRQKLRQVRPATLGAAARIPGMTPAALTALLRHVKRR 615


>gi|328541701|ref|YP_004301810.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [polymorphum gilvum SL003B-26A1]
 gi|326411453|gb|ADZ68516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Polymorphum gilvum SL003B-26A1]
          Length = 623

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/590 (56%), Positives = 421/590 (71%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITH+  TIG MSCNPAIGGLGKGHLVREIDALDGLMGRVAD AGIQFR+LN +KGP
Sbjct: 31  RTVLITHRFDTIGVMSCNPAIGGLGKGHLVREIDALDGLMGRVADRAGIQFRLLNRRKGP 90

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVRGPR QADR LYR AMQ EI    NL V+ GE          ++ + + D   I C  
Sbjct: 91  AVRGPRAQADRRLYREAMQAEIAETANLTVVGGEAERLEIHDGRVAGVTLTDGRRIACGA 150

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLTTGTFLRG+IHIG  KIPAGR+G+ P+  L  S  +  F  GRLKTGTPARLDG++I
Sbjct: 151 VVLTTGTFLRGLIHIGDRKIPAGRVGEGPAMGLSVSLEEIGFALGRLKTGTPARLDGRSI 210

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            W + E+Q  D+  +PFS +T  IT  Q+ C ITRT   THRII EN+  SA+YSG+IK 
Sbjct: 211 DWARLEEQPGDDDPVPFSTLTVAITTPQVPCHITRTTEATHRIIRENLSRSAMYSGEIKG 270

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+   VYPNGIST+LPE+ QH F+RTIPGL
Sbjct: 271 RGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLDDHTVYPNGISTSLPEDAQHAFLRTIPGL 330

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           EKV +++PGYAIEYD+++P+EL  TLE ++  GLFLAGQINGTTGYEEA AQGL+AG+N+
Sbjct: 331 EKVTVLQPGYAIEYDHVDPRELKATLEARRCRGLFLAGQINGTTGYEEAGAQGLLAGLNA 390

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           A  +    C    R   YIGVMIDDL ++G+ EPYRMFTSRAEYR+SLR DNAD RLTP+
Sbjct: 391 ALAAGGGGCFTVDRAQGYIGVMIDDLVTRGITEPYRMFTSRAEYRLSLRADNADQRLTPL 450

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G+ LGC+   R+  F   +++    R LL++L +T        +   QDG  R+A++ LS
Sbjct: 451 GIALGCVSATRRIAFETKLEKLEETRRLLEALTVTPAQARRQGLPVNQDGIRRSAFDLLS 510

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           YPD S + L  + PD     + + E++  ++ Y+ Y  RQ  +   ++ +E   IP+DFD
Sbjct: 511 YPDMSFERLKDVWPDLAGIEASIAEQVATDALYSVYLDRQAADIAALRRDEALAIPEDFD 570

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +++L  LSNE+++KL  ++P  L QAS+++GMTPAAL LLL ++K+   +
Sbjct: 571 FAALAGLSNEIRQKLETVRPATLGQASRMDGMTPAALTLLLSHVKRQDRR 620


>gi|193214573|ref|YP_001995772.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088050|gb|ACF13325.1| glucose inhibited division protein A [Chloroherpeton thalassium
           ATCC 35110]
          Length = 622

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/620 (44%), Positives = 383/620 (61%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAG EAA   A++G    LITH  + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 3   YDVIVVGAGHAGTEAAFAPARMGLKVLLITHDLTAMARMSCNPAIGGVAKGQITREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +V DA GIQFR+LN  KG A+  PR QADR LY L M+R I ++ N+D+ + +V 
Sbjct: 63  GGEMAKVIDATGIQFRMLNRSKGAAMHSPRAQADRTLYSLDMRRRIEAESNIDLREDDVT 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G  TE     ++V++    I   + +LT GTFL G+IHIG     AGR + +  S  L  
Sbjct: 123 GIRTENGAFKAVVLRSGLEIEGKSAILTNGTFLNGLIHIGLKHYDAGRTLAEPASRGLTE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGIT 243
             +   F  GRLKTGTP R+D +++ + K E Q  DE   PFSF T+ +    Q+ C IT
Sbjct: 183 CLVNLGFSAGRLKTGTPPRIDARSVDYSKVETQTPDENPEPFSFETETLKGRPQVSCYIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T+LETH+++      S +++G ++  GPRYCPSIEDK+ RF +++ HQIFLEPEG  T+
Sbjct: 243 YTSLETHKVLETGFDESPMFTGRVQGIGPRYCPSIEDKVNRFRDKDRHQIFLEPEGFYTN 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE +Q + ++TI GLE V +IRPGYAIEYD+ +P +L  TLETK +  L
Sbjct: 303 EMYVNGFSTSLPESVQLRGLKTISGLENVKMIRPGYAIEYDFFHPHQLKSTLETKLVEHL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQIN T+GYEEAAAQGL+AGIN+A K    +    +R+++YIGV+IDDL +K + EP
Sbjct: 363 YFAGQINATSGYEEAAAQGLMAGINAALKIQAKEPFILNRSEAYIGVLIDDLITKSIDEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+RI LR DNAD RL   G  +G +GE   + F K   E   L    +   L
Sbjct: 423 YRMFTSRAEHRIILRQDNADRRLREKGYAVGLVGEEVYQAFLKKKSEIERLHKFFEEKNL 482

Query: 484 TSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFS----ICPDARKFS--SLVIER 535
           +  +LS    +   +   +T    +++  P+     L      +  +  + S    V E+
Sbjct: 483 SPDDLSGYYDTTGLEPVLRTLKLKDWIRRPNQDFHRLLEQCETLRGEVEQISQNPKVYEQ 542

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R+M  A+++   E   IP+ F+Y  +  LS E +EKL    P +L QA
Sbjct: 543 VIIDIKYEGYIRREMQLAEKMMRLENVEIPQKFNYDLIKGLSTEGREKLKKFSPISLGQA 602

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +++LL+ + +
Sbjct: 603 SRISGVSPADVSILLVRLGR 622


>gi|329121703|ref|ZP_08250320.1| glucose inhibited division protein A [Dialister micraerophilus DSM
           19965]
 gi|327468173|gb|EGF13659.1| glucose inhibited division protein A [Dialister micraerophilus DSM
           19965]
          Length = 624

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/619 (41%), Positives = 380/619 (61%), Gaps = 4/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AA+LGA T L T     +  M CNPAIGG GK HLV+EIDA
Sbjct: 6   TYDVIVVGAGHAGCEAALAAARLGARTLLFTISLENVAMMPCNPAIGGPGKSHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD   IQ R+LN+ KGPAV   R Q+D+  Y    +  + + +NL++ Q ++
Sbjct: 66  LGGQMGIAADETAIQMRMLNLGKGPAVYALRAQSDKGAYHRYFKSILENTDNLELKQAQI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++ + + + R   V+L TGT+L   I +G+     G  G  PS  L  
Sbjct: 126 MDIVVEDGKCKGVITEFDEIYRSKAVILCTGTYLDSRIIVGEYMYTGGPNGMRPSVGLSE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K   D  R KTGTP+R+DG+++ +D  + +  D+    FSF++++      +C ++ 
Sbjct: 186 NLKKHGIDILRFKTGTPSRVDGRSLNYDHMKLEEGDKANHAFSFLSERKDRNIKDCYLSY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+I+ +N+  S IYSG I   G RYCPSIEDK+VRF +++ HQ+F+EPEGL+T  
Sbjct: 246 TNENTHKILRDNLHRSPIYSGKIHGVGARYCPSIEDKVVRFADKDKHQLFVEPEGLDTTE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P ++Q+ F++TIPG E V ++RP YAIEYD ++P +L+PTLE  K+ GL+
Sbjct: 306 MYVQGMSTSMPIDVQYAFLKTIPGFENVKVMRPAYAIEYDLLDPLQLYPTLEVIKMEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+A K    +    +R ++YIG +IDDL +KG  EPY
Sbjct: 366 SAGQSNGTSGYEEAAAQGLMAGINAALKIQGKEPFILARHEAYIGTLIDDLVTKGTNEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G K+G + E R K F +  +++      + +   T
Sbjct: 426 RMMTSRSEYRLILRQDNADLRLTEKGYKIGLVNEERYKHFIERKRKFEEAMDYITTKRFT 485

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   + ++         T   A + L  P+ + +++       ++F +  +E ++I   
Sbjct: 486 PKEDVNKALEELGTTPLTTGIGADKILKRPEITYKDMVEKL-GCKEFDAEAVEEMEITVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ    K+ +  E + IP+D D+  L  +S E ++KL+ +KP +L QAS+I G+
Sbjct: 545 YEGYITRQENAIKKAEKMENKKIPQDMDFMKLEGISIEARQKLTKIKPLSLGQASRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKL 620
           +PA + +L++Y+KK   + 
Sbjct: 605 SPADIAILMVYVKKYKGEK 623


>gi|296122782|ref|YP_003630560.1| glucose inhibited division protein A [Planctomyces limnophilus DSM
           3776]
 gi|296015122|gb|ADG68361.1| glucose inhibited division protein A [Planctomyces limnophilus DSM
           3776]
          Length = 623

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/625 (46%), Positives = 397/625 (63%), Gaps = 23/625 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+VIG GHAGCEAA  AA+LGA TAL+T    T+G MSCNPAIGG+ KG +VR
Sbjct: 11  MSTYDFDVLVIGAGHAGCEAALAAARLGARTALLTMNCDTVGQMSCNPAIGGVAKGQIVR 70

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+V DA G+QFR+LN  KGPA+  PR QAD++LY+  M+R I  Q +L + 
Sbjct: 71  EIDALGGEMGKVIDANGLQFRMLNRSKGPAMHSPRAQADKKLYQFDMKRRIEEQPHLTLR 130

Query: 121 QGEVAGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           Q        E        ++ ++++  ++ R   VVLTTGTFL+ ++H G+ K P GR G
Sbjct: 131 QETTERLLVEHVPGNRPQLTGVLVRGGAIYRARAVVLTTGTFLQAIMHTGEAKTPGGRAG 190

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           D  + +L +S  +  F   R KTGTPARL+G+TI +   ++Q  D+   PFSFMT K+  
Sbjct: 191 DGTTGTLSDSLRELGFQLERFKTGTPARLNGRTIDYSVMQEQPGDDAPQPFSFMTTKLHQ 250

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C +T TN   H +I  N+  + +YSG I S GPRYCPSIEDK+VRF +++ H IFL
Sbjct: 251 QQLSCWLTETNESVHEVIRANLHRAPMYSGQINSRGPRYCPSIEDKVVRFADKSSHHIFL 310

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG NT  +Y NGIST+LP ++Q Q I ++ GLEK  I+R GYA+EYDY  P +L P+L
Sbjct: 311 EPEGYNTREIYCNGISTSLPRDVQDQMIHSVKGLEKAEIMRYGYAVEYDYAPPTQLLPSL 370

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GL+ AGQINGTTGYEEAA QGL+AGIN+A      + +   R+++Y+GV+ DDL
Sbjct: 371 ETKSVKGLYFAGQINGTTGYEEAAGQGLLAGINAALALQSREPLILDRSEAYLGVLTDDL 430

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G  +G + + R   F +Y Q+    R
Sbjct: 431 VTKGVDEPYRMFTSRAEFRLVLRHDNADLRLTAKGRDVGLVDQERWTAFEQYTQDLQAGR 490

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP--DARKFSSLVI 533
            LL                 K+  +  T  E L  P+ + Q L  + P   A+  S+   
Sbjct: 491 QLL----------------CKERFEGATLEEILRRPETTWQTLKELSPVVAAQAISTRAA 534

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+L+IE+ YA Y  RQ  + ++        IP  FDY ++  L  E KEKLS ++P +L 
Sbjct: 535 EQLEIETKYAGYIRRQDSDIEKASKLSNVRIPTAFDYHAIQHLRKEAKEKLSRIQPADLG 594

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QA +I G+TPA L+++L++IK+   
Sbjct: 595 QAGRISGITPADLSIVLLHIKERDR 619


>gi|196234360|ref|ZP_03133188.1| glucose inhibited division protein A [Chthoniobacter flavus
           Ellin428]
 gi|196221552|gb|EDY16094.1| glucose inhibited division protein A [Chthoniobacter flavus
           Ellin428]
          Length = 617

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 390/633 (61%), Gaps = 41/633 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA  AA+LG  T ++T    ++G MSCNPAIGG  KG +VREID
Sbjct: 6   KKYDVIVIGAGHAGIEAAMAAARLGCETLMLTQNLDSVGQMSCNPAIGGQAKGQMVREID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG   DA  IQFR+LN  KGP+VR PR Q D++ Y+   +  +  Q +LD+ QG 
Sbjct: 66  ALGGVMGLNTDATSIQFRMLNSGKGPSVRSPRAQCDKKAYQFRAKAVLERQPHLDLKQGN 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE      +       +   +VV+TTGTF+RG++H+G      GRMGDS  ++L 
Sbjct: 126 VTRILTEGGHACGVETNLGLRVLGRSVVVTTGTFMRGLLHVGLQNQSGGRMGDS-FSTLS 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR------- 236
           +S  +  F+ GR KTGTP RL+G+TI + + E+Q  DE  +PFS++ +K+  R       
Sbjct: 185 DSLRELGFEVGRFKTGTPCRLNGRTIDFSQCERQGGDEPPLPFSYIPEKLNERLHDIFTL 244

Query: 237 -----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                      Q+ C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK+VRF
Sbjct: 245 NHWRDGKFHVEQLPCWITNTNPRTHELIRSNLDKSPLYAGRIEGVGPRYCPSIEDKVVRF 304

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E+N HQ+FLEPEG +T+  Y NG+ST+LP E+Q+ FIR+IPGLE   I+RPGYA+EYDY
Sbjct: 305 SEKNSHQLFLEPEGRHTEEYYVNGVSTSLPMEVQYAFIRSIPGLENAEIMRPGYAVEYDY 364

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P +L PTLETK++  L+ AGQINGT+GYEEA AQGL+AG N+A K      +  SR D
Sbjct: 365 CPPTQLHPTLETKQVPHLYFAGQINGTSGYEEAGAQGLMAGANAALKLLDRPPLILSRAD 424

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +YIGV+IDDL +KG LEPYRMFTSRAE+R+ LR DNAD RLTPI  + G I   R ++  
Sbjct: 425 AYIGVLIDDLVTKGTLEPYRMFTSRAEHRLHLRQDNADLRLTPIAHRCGLISGYRWEKLQ 484

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD- 524
             I   + LR    +       ++                ++L  P+     L    P+ 
Sbjct: 485 AKIASLSQLREYANTTHFGGGKIA----------------QWLRRPESDHTQL----PEG 524

Query: 525 -ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            +  F++ + + +QIE  YA Y  RQ    ++++  E++ +P   DY ++  L  E ++K
Sbjct: 525 LSAPFAAELWDSIQIELKYAGYITRQEAAIEKLRRNEEKTLPAQLDYEAISGLRAETRQK 584

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           L+ ++P    QA++I G+TPA L LL +Y++K 
Sbjct: 585 LASIRPATFGQAARISGVTPADLALLSVYLEKR 617


>gi|78214049|ref|YP_382828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9605]
 gi|123577362|sp|Q3AGK9|MNMG_SYNSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78198508|gb|ABB36273.1| glucose inhibited division protein A [Synechococcus sp. CC9605]
          Length = 643

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/630 (43%), Positives = 380/630 (60%), Gaps = 8/630 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V G  T    ++  IS I     S+     V+LT GTFL G I +G   + AGR G+  
Sbjct: 128 MVTGLETTVAGDQQRISGIRTYFGSVYGADAVILTAGTFLGGRIWVGHQSMAAGRAGEQA 187

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q
Sbjct: 188 AEGLTETLQELGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQ 247

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEP
Sbjct: 248 MSCHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEP 307

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 308 EGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLET 367

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+ R     + + F R  SYIG MIDDL S
Sbjct: 368 KRVRGLFSAGQLNGTTGYEEAAAQGLVAGVNAGRLIGGQEPVHFPREGSYIGTMIDDLVS 427

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  
Sbjct: 428 KDLREPYRVLTSRSEYRLILRGDNADRRLTPLGHELGLIDDRRWQLFEDKLQAMEGEKQR 487

Query: 478 LKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+++ L        +    +      + T  + L  P     +L             V E
Sbjct: 488 LETVRLKVSDPVAPAVEQETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPLPVRE 547

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL+ ++P  L Q
Sbjct: 548 GAEIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLTAIQPSTLGQ 607

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           AS+I G++ A +  LL++++    +   + 
Sbjct: 608 ASRIPGVSKADITALLMWLELQQRERQPLA 637


>gi|290968161|ref|ZP_06559706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781836|gb|EFD94419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 629

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 368/621 (59%), Gaps = 4/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AA+LG  T + T     I  M CNPA+GG GK HLVREIDA
Sbjct: 6   TYDVIVIGAGHAGCEAALAAARLGVRTLICTLNLDNIALMPCNPAVGGPGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D   IQ R+LN  KGPAV   R Q+D+++Y++ M   + +Q+NLDV Q  +
Sbjct: 66  LGGEMAINTDKTCIQMRMLNTGKGPAVYSLRAQSDKKVYQMTMTETLENQKNLDVKQLLI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +   + R   V+L TGT+L+G I IG      G MG   + +L  
Sbjct: 126 TELLFEGNKVTGVVTELGEVYRAKAVILATGTYLKGKILIGDCSYAGGPMGQRSAEALSA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R KTGTPAR+D +T+  ++ EKQ  D +   FSF+  +       C +T 
Sbjct: 186 SLRQAGIRLMRFKTGTPARVDRRTLRTEEMEKQEGDTKGHAFSFLLPRQNRNTDCCWLTF 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN ETHRII +N+  +   +G ++  GPRYCPSIE KI RF ++  HQ+F+EPEG  T+ 
Sbjct: 246 TNEETHRIIRDNLHRAPTCNGTVQGIGPRYCPSIESKIQRFADKKRHQLFIEPEGKMTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST+LP ++Q+ F++TIPGLE V I+RP YAIEYD ++P +L   L  K+  GL+
Sbjct: 306 MYIQGMSTSLPVDVQYAFLKTIPGLEDVKIMRPAYAIEYDCLDPLQLDAALAVKEKEGLY 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ NGT+GYEEAAAQGL+AGIN+AR   + D    +R ++YIGV+IDDL +KG  EPY
Sbjct: 366 SAGQANGTSGYEEAAAQGLIAGINAARFVLQQDPFILTRAEAYIGVLIDDLVTKGTQEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+EYR+ LR DNAD RLT  G  +G +   R   F +  Q        LK   +T
Sbjct: 426 RMMTSRSEYRLLLRQDNADLRLTQKGYDMGLVTPERYAVFQQKQQAIQEALKALKECAVT 485

Query: 485 SKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
              ++      I         TAY+ L   + +   L  +       S+ V E ++I   
Sbjct: 486 PTAITQEKLRRIGTAPVRTGTTAYDLLRRNEVTYDTLQQVFL-LPSVSAEVQEEMEIMVK 544

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +++   E++L+P    Y SL  +S E +EKL+ ++P ++ QA +I G+
Sbjct: 545 YEGYIERQAEQVEKMNRLEQKLLPSSIQYDSLTTVSAEGREKLARIRPRSIGQAGRISGV 604

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           +PA +  LLIY+++   +  +
Sbjct: 605 SPADITALLIYLEQYKREGKD 625


>gi|163789247|ref|ZP_02183689.1| glucose-inhibited division protein A [Flavobacteriales bacterium
           ALC-1]
 gi|159875462|gb|EDP69524.1| glucose-inhibited division protein A [Flavobacteriales bacterium
           ALC-1]
          Length = 623

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 376/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA +A +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNDVYDVIVVGAGHAGSEAAAASANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E + +  +       ++  TVVLT GTFL G+IHIG      GR G+  + 
Sbjct: 121 QEMVSGLIVENHKVVGVKTSLGIEVKAKTVVLTNGTFLNGLIHIGDKNFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FS++   K    Q  
Sbjct: 181 GITEQLVNLGFDSGRMKTGTPPRVDGRSLDYSKMIEQPGDENPEKFSYLDITKPLQEQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSEQVHDLLREGFDRSPMFNGRIKSVGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTCEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + +     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLYFAGQINGTTGYEEAASQGLMAGINASLKVQEREVFTLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G ++G   +RR  R  +   + +      K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPKGYEIGLATKRRLSRMEEKQSKSDAFVQFFK 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
              +  +  +    +       +    ++  + P+ + Q++                + V
Sbjct: 481 DTSVKPEEANPVLEAKNSSPVKQQDKMFKLFARPNITTQDVRKFNAVERYIQDNNLDTEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+ +I+  YA Y  ++   A ++   E   IP DFDY+ L ++S E ++KL+ ++P  +
Sbjct: 541 IEQTEIQVKYAGYIEKEKNNADKLNRLENLKIPVDFDYNKLKSMSMEARQKLTEIQPVTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P  +++LL+Y+ +
Sbjct: 601 SQASRISGVSPNDISVLLVYLGR 623


>gi|260434562|ref|ZP_05788532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8109]
 gi|260412436|gb|EEX05732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8109]
          Length = 643

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/630 (43%), Positives = 381/630 (60%), Gaps = 8/630 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V G  T    E+  IS I     S+     V+LT GTFL G I +G   + AGR G+  
Sbjct: 128 MVTGLETTGEGEQQRISGIRTYFGSVYGADAVILTAGTFLGGRIWVGHQSMAAGRAGEQA 187

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q
Sbjct: 188 AEGLTEALQQLGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQ 247

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEP
Sbjct: 248 MSCHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEP 307

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 308 EGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLET 367

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYIG MIDDL S
Sbjct: 368 KRVRGLFSAGQLNGTTGYEEAAAQGLVAGVNAARLIGGQEPVHFPREGSYIGTMIDDLVS 427

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  
Sbjct: 428 KDLREPYRVLTSRSEYRLILRGDNADRRLTPLGRELGLIDDRRWQLFEDKLQAMEGEKQR 487

Query: 478 LKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+++ L        +    +      + T  + L  P     +L             V E
Sbjct: 488 LETVRLKVSDPVAPAVEKETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPMPVRE 547

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL+ ++P  L Q
Sbjct: 548 GAEIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLAAIQPSTLGQ 607

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           AS+I G++ A +  LL++++    +   + 
Sbjct: 608 ASRIPGVSKADITALLMWLELQQRERQPLA 637


>gi|22538276|ref|NP_689127.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Streptococcus agalactiae 2603V/R]
 gi|22535190|gb|AAN01000.1|AE014288_18 glucose-inhibited division protein A [Streptococcus agalactiae
           2603V/R]
          Length = 613

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/611 (41%), Positives = 357/611 (58%), Gaps = 7/611 (1%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
            EA+  A+++G  T L T     +  M CNP+IGG  KG +VREIDAL G MG+  D   
Sbjct: 1   MEASLAASRMGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDALGGEMGKNIDKTY 60

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           IQ ++LN  KGPAVR  R QAD+ LY   M++ +  QENL + Q  +     E   +  +
Sbjct: 61  IQMKMLNTGKGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMIDEILVEDGKVVGV 120

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
               N      +VV+TTGT LRG I +G LK  +G      S +L ++      + GR K
Sbjct: 121 RTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTLADNLRDLGLEIGRFK 180

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIME 255
           TGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ C +T TN  +H II +
Sbjct: 181 TGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVPCWLTYTNTLSHDIINQ 240

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG  T+ VY  G+ST+LP
Sbjct: 241 NLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRYTEEVYVQGLSTSLP 300

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           E++Q   +R+I GLE   ++R GYAIEYD + P +L  TLETK I+GLF AGQ NGT+GY
Sbjct: 301 EDVQVDLLRSIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIAGLFTAGQTNGTSGY 360

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAA QGLVAGIN+A K      +   R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+
Sbjct: 361 EEAAGQGLVAGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRL 420

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS---KNLSSTS 492
            LR DNAD RLT IG ++G + E R   F K   ++      L S+ L      N     
Sbjct: 421 ILRHDNADMRLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSIKLKPVSETNKRIQE 480

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYTGRQMI 551
           + FK      TA EF+  P  +                S VIE L+ E  Y  Y  + + 
Sbjct: 481 LGFKPLTDALTAKEFMRRPQITYAVATDFVGCADEPLDSKVIELLETEIKYEGYIKKALD 540

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           +  ++K  E++ IP   D+  + +++ E ++K   + P  L QAS+I G+ PA +++L++
Sbjct: 541 QVAKMKRMEEKRIPPHIDWDDIDSIATEARQKFKKINPETLGQASRISGVNPADISILMV 600

Query: 612 YIK-KNTVKLN 621
           Y++ +   + N
Sbjct: 601 YLEGRQKGRKN 611


>gi|51244704|ref|YP_064588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfotalea psychrophila LSv54]
 gi|81170536|sp|Q6APZ2|MNMG_DESPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50875741|emb|CAG35581.1| probable glucose inhibited division protein A [Desulfotalea
           psychrophila LSv54]
          Length = 647

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/631 (46%), Positives = 394/631 (62%), Gaps = 13/631 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D++VIG GHAGCEAA  AA+LG  T L      TIG+MSCNPAIGGL KGHLVREIDA
Sbjct: 15  DFDIVVIGAGHAGCEAALAAARLGHKTLLAVMNVDTIGAMSCNPAIGGLAKGHLVREIDA 74

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M RV DA  IQFR LN  KGPAV+  R QADR LYRL M+  I  QENL V Q EV
Sbjct: 75  LGGEMARVIDATSIQFRRLNTSKGPAVQSSRAQADRLLYRLQMKSVIEHQENLTVSQTEV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            GF  E   I+ +    +  I     ++ TGTFL G++HIG    PAGR+GD PS  L +
Sbjct: 135 NGFIVEDGKITGVTTTIDEKISVKAAIVATGTFLNGLVHIGLKNFPAGRLGDGPSTGLAD 194

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
            F    F  GR+KTGT  R+D  TI + + E Q +D     FSF +     T  Q+ C I
Sbjct: 195 WFYDNGFAVGRMKTGTVPRIDSLTIDYSELEAQESDMPPAHFSFDSQGKGYTLPQLPCYI 254

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II + I  S +Y+G I+  G RYCPSIEDKI+RF E++ HQ+FLEPEGL+T
Sbjct: 255 TYTNEKTHEIIRKGIDQSPLYAGIIQGIGARYCPSIEDKIMRFPEKDRHQVFLEPEGLDT 314

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNG+ T+LP E+Q + +++I GLE   IIRPGYAIEYDYI+P  L P+L TKKI  
Sbjct: 315 VEVYPNGLPTSLPLEVQIEMLQSIKGLENARIIRPGYAIEYDYIDPLGLRPSLATKKIEN 374

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL+AGIN+ R   + + +   R+ +YIGV+IDDL + G  E
Sbjct: 375 LYLAGQINGTSGYEEAAAQGLMAGINATRYLEEREPLILDRSQAYIGVLIDDLVTCGTKE 434

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+FTSRAEYR+ LR DNAD+RL  IG  +G + E + +R+       +   + L ++ 
Sbjct: 435 PYRLFTSRAEYRLLLREDNADSRLCQIGKDIGLLDEDKHQRYLIKQAAIDAGCATLDAIS 494

Query: 483 LTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARK-------FSSLV 532
           +      +  ++        +       L  P+ +I  L  +   A          +S V
Sbjct: 495 IKPTAEVNRILNDAASADLKQKSALSSLLRRPEINITFLQKLPLTAGDKEAVIALANSAV 554

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            + +Q+   +  Y  RQ  + +  K  E   +P+D +Y+ L  LSNE+ EKLS ++P +L
Sbjct: 555 CQEVQVRIKFKGYLQRQEEQVQRFKRMETLKLPEDLNYAQLSGLSNEVVEKLSTIRPISL 614

Query: 593 LQASKIEGMTPAALNLLLIYIKK-NTVKLNE 622
            QAS+I G+TPAA+++L ++++K N +K N+
Sbjct: 615 GQASRISGITPAAVSVLQVHLRKLNYLKSND 645


>gi|313157561|gb|EFR56979.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Alistipes sp. HGB5]
          Length = 627

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/620 (43%), Positives = 381/620 (61%), Gaps = 13/620 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IVIGGGHAGCEAA+ AA+LG+ T L+T   + + SMSCNPA+GG+ KG +VREIDA
Sbjct: 4   EYDIIVIGGGHAGCEAASAAARLGSRTLLLTMDMTKMASMSCNPAVGGVAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D   IQFR+LN  KG A+  PR Q D+  +    +  + +  NL + Q   
Sbjct: 64  LGGQMGRITDLTTIQFRMLNRSKGAAMWSPRAQCDKSRFSAQWRHTLENTVNLYIWQDAA 123

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                +    K  I  +  Q      C  VVLT+GTFL G++H G      GR GD+ S+
Sbjct: 124 TELLFDTAGVKPRIKGVRTQMGIEFACRAVVLTSGTFLGGMMHCGTSHAEGGRAGDAASH 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IE 239
            +  S     F+TGR+KTGTPARLD +TI ++  E Q+ DE    FSF  D    +  + 
Sbjct: 184 GITESLRAIGFETGRMKTGTPARLDARTIDFESLEPQYGDENPDKFSFSPDTQPVKHQLP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  T+ E H ++      S +++G IK  GPRYCPSIEDK+  F +++ HQ+FLEPEG
Sbjct: 244 CFLVYTSAEVHDLLRTGFDRSPLFNGTIKGIGPRYCPSIEDKLRTFADKDQHQLFLEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+  Y NG S++LP +IQ + +  I G E ++I RPGYAIEYDY  P +L  +LETK 
Sbjct: 304 ESTNEYYLNGFSSSLPWDIQWEALHKIRGFEDLHIFRPGYAIEYDYFPPTQLHHSLETKL 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGL+ AGQ+NGTTGYEEAAAQGL+AGIN+ R     + +   R ++YIGV+IDDL +KG
Sbjct: 364 VSGLYFAGQVNGTTGYEEAAAQGLIAGINAHRALKGEEAVVLQRDEAYIGVLIDDLVTKG 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYRI LR DNAD RLTPIG K+G I ++R   F +       L S  +
Sbjct: 424 VDEPYRMFTSRAEYRILLRQDNADLRLTPIGYKIGLISQKRYAHFTEKKASVESLISFAR 483

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSL 531
              + +  ++    S++ +   + R  Y+ L   + + ++L       RKF      S+ 
Sbjct: 484 RQSIKAAEINDYLESVNSEPLTQGRKLYDILMRNNVTFESLSEALLKLRKFISDNNISAE 543

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            IE  +I+  Y  Y  R+   A+++   E   IP+DFD+ S+ +L+ E ++KL+ ++P  
Sbjct: 544 AIEEAEIQIKYKGYIEREKFIAEKLHRLENIRIPEDFDFHSMNSLTIEARQKLTRIRPAT 603

Query: 592 LLQASKIEGMTPAALNLLLI 611
           + QAS+I G++PA +N+LL+
Sbjct: 604 IGQASRIPGVSPADVNVLLV 623


>gi|71898003|ref|ZP_00680208.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|71732247|gb|EAO34302.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
          Length = 629

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/624 (46%), Positives = 381/624 (61%), Gaps = 7/624 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +      Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAITGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGRLSALWAT 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             N     +         +     + +  P+     L  +           V E+++I  
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I G
Sbjct: 548 KYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPG 607

Query: 601 MTPAALNLLLIYIKKNTVKLNEIV 624
           MTPAA++LLL+++++  ++ N + 
Sbjct: 608 MTPAAISLLLVHLER--MRRNRVA 629


>gi|71276642|ref|ZP_00652914.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Dixon]
 gi|71900051|ref|ZP_00682195.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|170730097|ref|YP_001775530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa M12]
 gi|71162569|gb|EAO12299.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Dixon]
 gi|71730194|gb|EAO32281.1| Glucose-inhibited division protein A subfamily [Xylella fastidiosa
           Ann-1]
 gi|167964890|gb|ACA11900.1| glucose inhibited division protein A [Xylella fastidiosa M12]
          Length = 629

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/624 (46%), Positives = 382/624 (61%), Gaps = 7/624 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +  ++  Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIRNSASHPSQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q   +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLDLVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECRRLSALWAT 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             N     +         +     + +  P+     L  I           V E+++I  
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRIPSLGPGVDDAQVAEQVEISV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I G
Sbjct: 548 KYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPG 607

Query: 601 MTPAALNLLLIYIKKNTVKLNEIV 624
           MTPAA++LLL+++++  ++ N + 
Sbjct: 608 MTPAAISLLLVHLER--MRRNRVA 629


>gi|255994564|ref|ZP_05427699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium saphenum ATCC 49989]
 gi|255993277|gb|EEU03366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Eubacterium saphenum ATCC 49989]
          Length = 641

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/624 (40%), Positives = 366/624 (58%), Gaps = 6/624 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV VIG GHAGCEA   AA+LG  T +       +  M+CNP+IGG GKG LVREIDA
Sbjct: 18  KFDVAVIGAGHAGCEAGLAAARLGLKTVVFASTLEAVAMMACNPSIGGTGKGQLVREIDA 77

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA  +Q ++LN  KGPA++  R QAD++ Y   M+  +  +ENL++ Q E+
Sbjct: 78  LGGEMGVNIDATMVQSKMLNTGKGPAIQSLRAQADKKEYHARMKSVLEKEENLELKQAEI 137

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                     K  +++++ +  +      V+L TGTFL   I IG  +  +G  G +  N
Sbjct: 138 VTIEAAYTEGKKRVTAVITKTGARYEAKAVILATGTFLSSKIFIGHSEYSSGPDGMAACN 197

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S         R KTGTPAR    T  +   +++  D+ ++PFSF+T  I   Q+ C
Sbjct: 198 ELSQSIRTLGLKLRRFKTGTPARALKNTFDYSLMKREEGDQPVVPFSFLTKNINIDQLPC 257

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II +N   SA++SG I+  GPRYCPSIEDK+ RF ++  HQ+F+EPEG 
Sbjct: 258 YLTYTNEKTHEIIRDNFNRSAMFSGKIEGAGPRYCPSIEDKVKRFADKKRHQLFIEPEGR 317

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y  G+S++LPE++Q  F RTIPGLE + I RP YAIEYD I+  ELF TLETK++
Sbjct: 318 NTEEMYIQGMSSSLPEDVQTLFYRTIPGLENIEISRPAYAIEYDCIDSLELFHTLETKEV 377

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQING++GYEEA AQGL+AGIN+  K          R ++YIGV+IDDL +KG 
Sbjct: 378 GNLYCAGQINGSSGYEEAGAQGLIAGINAGLKLRNKPPFVLGRDEAYIGVLIDDLVTKGT 437

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLT  G ++G   + R ++  +  Q      + LK 
Sbjct: 438 NEPYRMMTSRAEYRLLLRQDNADLRLTQRGYEIGLASDERLEKMKRKRQGIEDELARLKK 497

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
              + + ++            K  + YE L  P  S + L ++  +       VI +++I
Sbjct: 498 HKASPEEVNDILEQKGTGAISKKTSLYELLKRPQLSYEELGAVDGERPALDDGVITQVEI 557

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ +    K  E + +  + DY S+  L  E  EKL+ +KP ++  AS+I
Sbjct: 558 SCKYEGYINKQLEQVDRFKQLEDKALSANLDYLSIKGLRLEAAEKLAAIKPASVGAASRI 617

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++PA + +LL+Y+++ T +  +
Sbjct: 618 SGVSPADIGVLLVYLERMTREKAK 641


>gi|15838697|ref|NP_299385.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa 9a5c]
 gi|21263697|sp|Q9PBN4|MNMG_XYLFA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|9107234|gb|AAF84905.1|AE004026_6 glucose inhibited division protein A [Xylella fastidiosa 9a5c]
          Length = 629

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/624 (46%), Positives = 380/624 (60%), Gaps = 7/624 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRALYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +  F   RLKTGTP R+DG+T+ +   ++Q  D      SF+ +      Q+ C IT+
Sbjct: 188 LRERLFTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGAGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG I + R   F    +        L +   T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLIDDARWAHFNAKQEAVARECERLSAFWAT 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             N     +         +     + +  P+     L  +           V E+++I  
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I G
Sbjct: 548 KYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPG 607

Query: 601 MTPAALNLLLIYIKKNTVKLNEIV 624
           MTPAA++LLL+++++  ++ N + 
Sbjct: 608 MTPAAISLLLVHLER--MRRNRVA 629


>gi|292669285|ref|ZP_06602711.1| glucose inhibited division protein A [Selenomonas noxia ATCC 43541]
 gi|292649126|gb|EFF67098.1| glucose inhibited division protein A [Selenomonas noxia ATCC 43541]
          Length = 626

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/623 (43%), Positives = 380/623 (60%), Gaps = 9/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP+IGG GK HLVREI
Sbjct: 4   NTNYDIIVIGAGHAGVEAALAAARMGRRTLILTLSLDNIAMMPCNPSIGGPGKSHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENL V Q 
Sbjct: 64  DALGGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLHVRQL 123

Query: 123 EVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V    +E++     ++ IV +    +    V+L TGT+LRG I +G+    +G  G  P
Sbjct: 124 LVTELLSEEHAGEKRVTGIVCETGERLTARAVILATGTYLRGRIILGETIYDSGPNGQRP 183

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           S SL +S         R KTGTPAR+D ++I + KT  Q  D     FSF+T+++   Q 
Sbjct: 184 SMSLSDSLRAVGLKLMRFKTGTPARIDRRSIDFAKTSMQEGDPAAPAFSFLTNEMPAEQT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN ETH +I  N+  + + +G I+  GPRYCPS+E KI RF ++  HQ+FLEPE
Sbjct: 244 PCWLTYTNEETHAVIRANLHRAPMANGVIEGIGPRYCPSVETKIARFPDKERHQLFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+ST+LP ++Q  F+ TIPGLE   I+RPGYAIEYD ++P +L  TL  K
Sbjct: 304 GLHTNEMYVQGMSTSLPTDVQEAFLTTIPGLEHARIMRPGYAIEYDCLDPLQLEATLAVK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I+GL+ AGQ NGT+GYEEAAAQGL+AGIN+AR     + +   R+D YIGV+IDDL +K
Sbjct: 364 GIAGLYSAGQSNGTSGYEEAAAQGLIAGINAARSIGGEEPLVLRRSDGYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DNAD RLTP G  +G + + R  RF       +   +LL
Sbjct: 424 GTEEPYRMMTSRAEYRLVLRQDNADLRLTPRGRAVGLVTDERWVRFTAKRDAIDAALALL 483

Query: 479 KSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +   L+    +   ++           + +  LS  +   + L ++  D    +  V E 
Sbjct: 484 RERRLSPSAETEALLADAGISPLRVPMSLFALLSR-EGDYRVLAALF-DLPALADDVREE 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + Y  Y  +Q  +   ++  E R IP +FDY+++ +L  E  EKL+ ++P ++ QA
Sbjct: 542 VEITARYDGYIRKQEEQIARMERLESRRIPAEFDYAAVTSLRLEAAEKLAAVRPRSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G++PA +++LL+Y+++   
Sbjct: 602 SRISGVSPADISVLLVYLERARR 624


>gi|183222816|ref|YP_001840812.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189909571|ref|YP_001961126.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|205831527|sp|B0S904|MNMG_LEPBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831528|sp|B0SS01|MNMG_LEPBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|167774247|gb|ABZ92548.1| Glucose inhibited division protein A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781238|gb|ABZ99536.1| Glucose-inhibited division protein A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 624

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/613 (46%), Positives = 385/613 (62%), Gaps = 3/613 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D IV+G GHAG EAA ++AK G  T LIT    TIG MSCNPAIGG+ KGH+VRE+D
Sbjct: 8   NQFDCIVVGAGHAGTEAAYISAKAGLKTLLITMNLDTIGQMSCNPAIGGIAKGHMVREVD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGRV D  GIQF++LN  KGP+V  PR QA+++ Y+L ++ ++   + L + Q  
Sbjct: 68  ALGGLMGRVIDQTGIQFKMLNTSKGPSVWAPRAQAEKKQYQLMIKHQLEKLQQLSIRQDT 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N ++ ++         + V+LTTGTFL  VIHIG  +  +GR+G+  +  L 
Sbjct: 128 VEDLIVEGNQVTGVITGRGFTFYTNHVILTTGTFLSSVIHIGTYQKESGRIGEPTTKGLS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +F+   GRLKTGTPAR+   +I +D  E Q  DE   PFSF T KI  +QI C IT
Sbjct: 188 HTLARFELRLGRLKTGTPARVHKNSINFDGLEIQDGDENPRPFSFSTKKIDRKQIPCFIT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I +N+++S +YSG IKS GPRYCPSIEDK+VRF ER+ HQIF+EPEG  T+
Sbjct: 248 YTNDTTHELIKQNLEYSPMYSGQIKSVGPRYCPSIEDKVVRFAERDRHQIFIEPEGYETN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+ST+LPEE+Q +F+R+I GLE+V ++RPGYAIEYDY++P EL PTLETKK+ GL
Sbjct: 308 EMYLNGVSTSLPEEVQWKFLRSIKGLEQVELMRPGYAIEYDYVDPTELHPTLETKKVKGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVA  N  R   K + I F R++SYIGV++DDL  KGV +P
Sbjct: 368 YHAGQINGTTGYEEAAAQGLVAAYNVIRSVRKEEPILFKRSESYIGVLVDDLVYKGVEDP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RL   G ++G + E   K           ++S L    +
Sbjct: 428 YRMFTSRAEYRLLLRQDNADQRLMQYGYEMGLVEESLYKDMKDRYARIESIKSHLFVSAM 487

Query: 484 TSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 +  +  KQ        +   FL   D  I++L  I  +    +      L++E 
Sbjct: 488 KPSPELTKVLEEKQITNYKFGHSLSSFLKRSDIKIKDLEPIVSELSILNEDEKAVLEMEV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  R++   +  K      IP DFDY+S+  L  E   KL   +P NL  A  I G
Sbjct: 548 KYEGYLKRELETIEYRKKFLNFQIPIDFDYASVKGLKTEAIVKLEKHRPLNLENALHISG 607

Query: 601 MTPAALNLLLIYI 613
           + P+ ++LLL ++
Sbjct: 608 VDPSDVDLLLYHL 620


>gi|154496172|ref|ZP_02034868.1| hypothetical protein BACCAP_00456 [Bacteroides capillosus ATCC
           29799]
 gi|150274727|gb|EDN01791.1| hypothetical protein BACCAP_00456 [Bacteroides capillosus ATCC
           29799]
          Length = 621

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 364/618 (58%), Gaps = 3/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++D+ VIG GHAG EAA  AA+LG  T   T     +G+M CNPAIGG GKGHLVRE
Sbjct: 4   FGGTFDIAVIGAGHAGIEAALAAARLGLQTVCFTVNLDAVGNMPCNPAIGGTGKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR ADAA IQ+R+LN  KGPAV   R QADR  Y+  M+  +  QENL V Q
Sbjct: 64  IDALGGEMGRAADAACIQYRILNKGKGPAVWSLRAQADRREYQKVMKHTLERQENLWVKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV    TE+  +S++V    ++      V+ TGTFL G   +G +   +G  G S +  
Sbjct: 124 AEVVEIRTEQGAVSAVVTATGAVYAVKAAVVCTGTFLGGRTIVGDVVRDSGPDGLSAALP 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +          R KTGTP R+  +++ + K E Q  D    PFSF T      +  C 
Sbjct: 184 LTDCLKSLGLSIRRFKTGTPPRVHRRSVDFSKMELQPGDPDAQPFSFETATAPENKAVCH 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH +I  N+  S +Y G I+  GPRYCPSIE KIVRF E+  HQ+F+EP GL+
Sbjct: 244 LTYTNAATHAVIRANLDRSPLYDGTIEGVGPRYCPSIETKIVRFPEKERHQLFIEPMGLD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LPEE+Q + + TIPGLE+  + R  YAIEYD ++P EL PTLE KK+ 
Sbjct: 304 TEELYIQGLSSSLPEEVQVEMLHTIPGLERAEMTRAAYAIEYDCVDPTELLPTLECKKVP 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQ NG++GYEEAAAQGLVAGIN+A K      +  SR   YIGV+IDDL +KG  
Sbjct: 364 GLYGAGQFNGSSGYEEAAAQGLVAGINAALKLLGRPPMVLSRDQGYIGVLIDDLVTKGTN 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSR EYR+  R DNAD RLT +G ++G + E R +         +   + L+  
Sbjct: 424 EPYRMMTSRTEYRLLCRQDNADRRLTGVGHEVGLVSEERYRAMLDKYAAVDRECARLERT 483

Query: 482 VLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            ++   +    +S K +          + L  P  +  +L  + P      + V E ++I
Sbjct: 484 GVSPSPVLDALLSDKGEPPAPNGARLADLLRRPRMTYGDLTPLDPARPDLPAAVTEAVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y  RQ  + +E++  E R +P D DY SL  L  E ++KLS ++P NL QAS+I
Sbjct: 544 DLKYRGYIERQQRQVEEMRRLESRPLPPDLDYQSLQGLRLEARQKLSEIRPLNLGQASRI 603

Query: 599 EGMTPAALNLLLIYIKKN 616
            G++PA +  L+I +++ 
Sbjct: 604 SGVSPADIAALMIALERG 621


>gi|312115381|ref|YP_004012977.1| glucose inhibited division protein A [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220510|gb|ADP71878.1| glucose inhibited division protein A [Rhodomicrobium vannielii ATCC
           17100]
          Length = 621

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/619 (54%), Positives = 432/619 (69%), Gaps = 1/619 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R++DVIV+GGGHAGCEAAA AA++GA+TAL+THK +T+G MSCNPAIGGLGKGHLVR
Sbjct: 1   MAERAFDVIVVGGGHAGCEAAAAAARMGAATALVTHKAATLGEMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDGLMGRV D AGIQFR+LN  KGPAV+GPR QADR+LYR  MQ  + +Q+ L V+
Sbjct: 61  EVDALDGLMGRVIDKAGIQFRMLNRSKGPAVQGPRAQADRKLYRREMQAALAAQDGLTVV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V     E   ++ +V      +R   V +TTGTFL+GVIH+G+ + PAGR+G++PS 
Sbjct: 121 EDAVEDLLVESGAVAGVVTASGRELRSGAVAITTGTFLKGVIHLGETRTPAGRVGEAPSI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +         GRLKTGTPARLDG+TI + + + Q  D   +PFSFMTD+I   QI C
Sbjct: 181 GLSDRLYALGLRMGRLKTGTPARLDGRTIDFTRLDSQPGDAPPVPFSFMTDRIETPQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T  ETH II  NI  + +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPEGL
Sbjct: 241 AITATTAETHAIIRANIHRAPMYSGQIEGVGPRYCPSIEDKVVRFADRESHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LPE++Q  FI TIPGLE+  I+RPGYAIEYDY++P+EL  TLE K++
Sbjct: 301 DDPTVYPNGISTSLPEDVQRAFIATIPGLERATIVRPGYAIEYDYVDPRELTATLEVKRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             LFLAGQINGTTGYEEAA QGLVAGIN+A   S  +     SRTD YIGVMIDDL ++G
Sbjct: 361 PRLFLAGQINGTTGYEEAAGQGLVAGINAALVASGGVADFVVSRTDGYIGVMIDDLVTRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYR+ LR DNAD RLTP+G + GC+G  R+  +A         R LL+
Sbjct: 421 VSEPYRMFTSRAEYRLRLRADNADERLTPLGARAGCVGSAREAAYAAKADALGSARRLLE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +L LT    +   I   +DG+ R+A++ L+ P  SI  L  + P+        +ERL+++
Sbjct: 481 TLTLTPDEAARHGIVLNRDGRRRSAFDLLALPGQSIAALARVWPELGDMPRGTVERLEVD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ       + +E   IP   D++++  LSNE+++KL   +P  L QA++I+
Sbjct: 541 ARYAVYLDRQEASIVAFRKDEAVAIPPALDFAAIQGLSNEVRQKLDRHRPATLAQAARID 600

Query: 600 GMTPAALNLLLIYIKKNTV 618
           GMTPAAL +LL +I+K   
Sbjct: 601 GMTPAALMVLLAHIRKTAR 619


>gi|21672295|ref|NP_660362.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|3913737|sp|O51879|MNMG_BUCAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2827025|gb|AAC38117.1| putative chromosome replication protein [Buchnera aphidicola]
 gi|21622893|gb|AAM67573.1| glucose inhibited division protein A [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 631

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/621 (46%), Positives = 388/621 (62%), Gaps = 5/621 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DVIVIGGGHAG EAAA +A++G  T L+T K + IG +SCNPAIGG+GK HLV+EID
Sbjct: 7   KNFDVIVIGGGHAGTEAAAASARVGCKTLLLTQKITDIGVLSCNPAIGGIGKSHLVKEID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLM R  D +GIQFRVLN KKGPAVR  R QADR LY   +++ +  + NL +++ E
Sbjct: 67  ALGGLMARAIDYSGIQFRVLNSKKGPAVRSTRAQADRILYCQNIKKLLKKELNLLILETE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   +  ++ Q N      +VVL+TGTFL G IHIG     AGR G+  S  L 
Sbjct: 127 VKDLIVKNYQVIGVLTQSNMSFYSRSVVLSTGTFLGGKIHIGLESYSAGRKGEKASIDLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
                  F   RLKTGTP R+D  TI ++    Q  D     FSFM D   +  QI C +
Sbjct: 187 LRLRDLPFRVDRLKTGTPPRIDINTINFENLFVQHGDVPTPVFSFMGDISNHPLQIPCFL 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  S +Y+G IK  GPRYCPSIEDKIVRF +R  HQIFLEPEGL +
Sbjct: 247 THTNEKTHEIIRKNLHKSPLYTGIIKGVGPRYCPSIEDKIVRFPDRKSHQIFLEPEGLTS 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +YPNGIST+LP ++Q + + ++ GLEK  II PGYA+EYD+ +PK+L  TLE+K I G
Sbjct: 307 IEIYPNGISTSLPLDVQKEIVSSVKGLEKSKIITPGYAVEYDFFDPKDLNLTLESKWIKG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAA+QGL+AG+N+A  +         R  +Y+GV+IDDLT++G  E
Sbjct: 367 LFLAGQINGTTGYEEAASQGLLAGLNAALSAKDCKQWFPRRDQAYLGVLIDDLTTQGANE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSR+EYR++LR DNAD RLT I  KLG +   R  R+ + +   +  ++ LK + 
Sbjct: 427 PYRMFTSRSEYRLTLREDNADLRLTEIAYKLGLVDNPRWIRYNEKVLNISNEKNRLKKIK 486

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQI 538
           +  K+  ST ++        K       L  P+ + +NL  +       S      +++ 
Sbjct: 487 IYPKSSDSTILNQLFNIVLTKEINILNLLKRPEITYENLKYLKNFKVGISDLEAAGQIEN 546

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  RQ+ E       E   +   +DY+ +  LS+E   KL+  KP ++ QAS+I
Sbjct: 547 EIKYEGYIKRQLEEINRHLKNENTPLLPTYDYNKIKGLSHEAVLKLNDYKPVSVGQASRI 606

Query: 599 EGMTPAALNLLLIYIKKNTVK 619
            G+TPA +++LLI++KK   K
Sbjct: 607 SGITPATISILLIHLKKEYYK 627


>gi|288800538|ref|ZP_06405996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332751|gb|EFC71231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 624

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/624 (40%), Positives = 359/624 (57%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+GGGHAG EAA  A+ +GA T LIT   + IG MSCNPAIGG+ KG +VRE
Sbjct: 1   MNFKYDVIVVGGGHAGNEAATAASNMGAKTCLITIDMNKIGQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + DA  IQFR+LN  KGPAV  PR Q DRE +    +  +   ENLD+ Q
Sbjct: 61  IDALGGQMGLITDATAIQFRMLNRGKGPAVWSPRAQCDREKFITKWKETLDKTENLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +V     + N I  +            V++T GTFL G++HIG+   P GR  +     
Sbjct: 121 DQVDELIVKNNEIVGVKTVWGVEFTAKCVIITAGTFLNGLMHIGRRTFPGGRCAEPAVPH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L          + R+KTGTP R+D +++ +D+ E Q  D     FS+M      +Q+ C 
Sbjct: 181 LTECINHLGIRSDRMKTGTPVRIDKRSVHFDEMEIQDGDFDFHQFSYMNLHKPLKQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              T  E H  + + I  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TFYTTPEAHMELNKGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDKHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P E+Q   +  IP L    I RPGYAIEYDY +P +L  TLE+K + 
Sbjct: 301 TNEMYLNGFSSSMPFEVQLNALHKIPALRDAKIYRPGYAIEYDYFDPTQLKHTLESKVVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKS-NKLDCICFSRTDSYIGVMIDDLTSKGV 420
           GL+ AGQ+NGTTGYEEAA QGLVAGIN+A +           R +SYIGV+IDDLT+KGV
Sbjct: 361 GLYFAGQVNGTTGYEEAAGQGLVAGINAALRCFYNDKEFIMKRDESYIGVLIDDLTTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG   + R   + +  +  + +      
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADYRLTSKAFELGIATKERYDWWKQKEESISKIIQFCDE 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSL 531
             +  K +++    +       +    + ++ P  ++ NL  + P             + 
Sbjct: 481 TSIKPKEINASLERLGTTPIHSSIKISDLIARPQLTMNNLAEVIPHLNDILKAVPNRQAE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E  +I   Y  Y  R+ I A +++  E   I   F+YS L  +S E ++KL  ++P  
Sbjct: 541 ITEAAEIRIKYRGYIERERIIADKMRRLEDIRIKGRFNYSQLHEISTEGRQKLEKIQPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L +AS+I G++P+ +N+LLI + +
Sbjct: 601 LAEASRIPGVSPSDINVLLILLGR 624


>gi|24753758|gb|AAN64006.1|AF434658_3 glucose inhibited division protein A [Leptospira interrogans]
          Length = 635

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/625 (44%), Positives = 379/625 (60%), Gaps = 5/625 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D +V+G GHAG EAA +++K GA T LIT    TIG MSCNPAIGG+ KGH+VRE
Sbjct: 10  FPNRFDCVVVGAGHAGSEAAYISSKGGARTLLITMNLDTIGQMSCNPAIGGIAKGHMVRE 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG++ D  GIQF++LN  KGP+V  PR QA+++ Y+L ++  + +++NL + Q
Sbjct: 70  VDALGGIMGKMIDNTGIQFKMLNTSKGPSVWAPRAQAEKKEYQLKVKHTLEAEKNLSIRQ 129

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  +       I  + V+LTTGTFL  ++HIG  +   GRM +     
Sbjct: 130 DTVEELIIENDQVIGVRTGRGFEIFTNHVILTTGTFLSSLVHIGTYQNENGRMCEPTVKG 189

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  K++   GRLKTGTP R+   ++       Q  D    PFSF TDKIT +QI C 
Sbjct: 190 LSKSLAKYNLKLGRLKTGTPPRIHKNSVDLSVLTIQEGDSNPSPFSFSTDKITRKQIPCF 249

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN ETH++I EN+  S +YSG I+S GPRYCPSIEDK+VRF +R  HQ+FLEPEG  
Sbjct: 250 ITYTNAETHKLIHENLNLSPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQVFLEPEGYE 309

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG+ST+LPEE+Q + +R++ GLE   I+RPGYAIEYDY++P EL PTLETKKI 
Sbjct: 310 TSEIYLNGVSTSLPEEVQWKLVRSLKGLENAEIVRPGYAIEYDYVDPTELKPTLETKKIK 369

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGTTGYEEAAAQGLVA  +       L  + F R++SYIGV+IDDL  KGV 
Sbjct: 370 GLYHAGQINGTTGYEEAAAQGLVAAYSVLHSLRNLTPLLFKRSESYIGVLIDDLVHKGVE 429

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYRM TSRAE+R+ LR DNAD RL   G  LG + ++      +  +  N +R  +  +
Sbjct: 430 DPYRMLTSRAEHRLLLRQDNADQRLMKYGYDLGLVDQKSYDCMKEKYERVNSVREKIYQI 489

Query: 482 VLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            L   +     +  K             FL  P+  I+++  +  +   +S L    L++
Sbjct: 490 PLKPSDEFQNLLDQKGITNYKFGMKLDSFLKRPEIKIKDIEFMISEVSSWSDLEKSVLEM 549

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  R++   +         IP+D +Y  +  L  E  +KL   KP  L +AS+I
Sbjct: 550 EIKYEGYIKRELETIQWKNKYLDLAIPEDINYEMIAGLKKEAIQKLKSHKPMTLEKASQI 609

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G+ P+ ++L+L +IK    K  E+
Sbjct: 610 SGVDPSDVDLILYHIK--GKKKQEV 632


>gi|323141444|ref|ZP_08076334.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414100|gb|EFY04929.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 641

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/624 (41%), Positives = 368/624 (58%), Gaps = 4/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  ++DVIV+G GHAG EAA  AA+LG  T L T     +  M CNP+IGG  KGHLVRE
Sbjct: 18  ITDTFDVIVVGAGHAGVEAALAAARLGGKTLLATLSLDNVALMPCNPSIGGPAKGHLVRE 77

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG  AD A IQ R+LN  KG AV   R Q D+  Y   M++ +  QENL++ Q
Sbjct: 78  LDALGGQMGISADLACIQMRLLNTGKGYAVHALRGQEDKPFYHTLMKKIVEDQENLELKQ 137

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +  +   +     V+L TGT+LRG I  G++    G  G   +  
Sbjct: 138 LMIDKLLVENGAVVGVEAETGEVFEAKCVILATGTYLRGRIVYGQVNYECGPNGLRSAQK 197

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S ++   +  R KTGTPAR+D +++ + K E Q+ DE +  FSF++D  T  Q+ C 
Sbjct: 198 LSASLLENGVELMRFKTGTPARIDARSLDYSKMEPQYGDEEVRNFSFISDIKTREQVPCY 257

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN  TH+II +N+  S +Y+G I+  GPRYCPSIE KIVRF  +  HQ+F+EPEG +
Sbjct: 258 LTYTNEATHKIIRDNLHLSGMYNGMIEGVGPRYCPSIESKIVRFANKERHQLFIEPEGRS 317

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y  G+S++LP  IQ QF++TIPGLE   ++R GYAI+YD ++P +L P+LE K IS
Sbjct: 318 TNEMYVQGMSSSLPAHIQLQFMQTIPGLEHCKMMRAGYAIDYDCLDPLQLRPSLEHKAIS 377

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ NGT+GYEEAAAQGL+AGIN+  K N  + +   R ++YIGV+IDDL +KG  
Sbjct: 378 GLFSAGQSNGTSGYEEAAAQGLMAGINAMMKINGREPLVLRRDEAYIGVLIDDLVTKGTS 437

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DNAD RLT  G  +G + ++R   F +         S L   
Sbjct: 438 EPYRMMTSRAEYRLLLRQDNADLRLTEKGRAIGLVDDKRYGIFTEKRTALERTVSELGKQ 497

Query: 482 VLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            ++     N    ++         +  + L   + +   L        + +  V E+ +I
Sbjct: 498 NISPSAENNAKLDAMGTAPLRSGSSLLDLLRRKEVTYSKLQQAF-GLSELAPQVAEQAEI 556

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            + Y  Y  +Q  E +     E + +P D DY ++  LS+E  EKL  ++P N+ QAS+I
Sbjct: 557 FAKYEGYITKQRQEVERFMKLENKRLPDDIDYRAIKELSSEAAEKLDKVRPANIGQASRI 616

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
            G++PA +++L+I ++    K  E
Sbjct: 617 SGVSPADISVLMIALELKRRKEQE 640


>gi|217967499|ref|YP_002353005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dictyoglomus turgidum DSM 6724]
 gi|217336598|gb|ACK42391.1| glucose inhibited division protein A [Dictyoglomus turgidum DSM
           6724]
          Length = 619

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/613 (43%), Positives = 366/613 (59%), Gaps = 3/613 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIV+GGGHAGCEAA  A++LG    LIT    T+G + CNPA+GG GKGHL+ EID
Sbjct: 2   EKYDVIVVGGGHAGCEAAYAASRLGVRVLLITMNYDTVGWLPCNPAMGGPGKGHLIMEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GL GR+ + + IQ ++LN  KGPAVR  R Q D+ +Y   M+  + S +NL++ QGE
Sbjct: 62  ALGGLTGRITNRSMIQVKMLNTSKGPAVRALRAQVDKWIYPAKMREFLESIKNLEIYQGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N +  +++          VV+T GTF+ GVIHI     PAGRM + PS  L 
Sbjct: 122 VVDLIVEDNEVKGVILSTKKEFYAERVVITPGTFMNGVIHISTWSKPAGRMNEFPSVGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +   + GR  TGT  R+D +TI + KT  Q  DE L  FSF  +     Q+   +T
Sbjct: 182 DALRRLGLEVGRFNTGTTPRVDKRTIDFSKTIIQPGDEELHSFSFWEEPEPREQVPSYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +T  I++ NI  +A   G +   GPRYCPSIE+K + F +   HQ+FLEPEG N+ 
Sbjct: 242 RTTQKTKEIVLANIHLTASRIGGMVKKGPRYCPSIEEKYIWFPDHETHQVFLEPEGRNSV 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  GI T+LPEEIQ Q +R+IPGLE+V +IRPGYAI YD + P +L  TLETKKI GL
Sbjct: 302 EIYVQGIYTSLPEEIQIQILRSIPGLEEVELIRPGYAIAYDMVYPHQLKFTLETKKIKGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG N+A      + +   R + YIGV+IDDL +KGV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGANAALSLIGKEPLIIRRDEGYIGVLIDDLVTKGVDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYRI LR DNAD RLTP   KLG I E   K F + ++   + +  L+ + +
Sbjct: 422 YRILTSRAEYRILLRADNADQRLTPKAYKLGLISEDMWKMFQEKMERIKYEKKRLERVSV 481

Query: 484 TSKNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             + ++   +        +       +  P+ +  +L  I   A        + ++ +  
Sbjct: 482 QPEEINGILLEKGTSPIVQPIPLVRIIKRPEITYDDLERIGL-AGDLPKKWRDTVETDIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +++ + KE +  E   IP D DY  +P LS E +EKL  ++P+   QA +I G+
Sbjct: 541 YEGYIKKELDKVKEFQEYESLEIPHDIDYGKIPHLSREGREKLEKVRPYTFGQAMRITGV 600

Query: 602 TPAALNLLLIYIK 614
               L +LL Y++
Sbjct: 601 NAGDLTVLLYYLR 613


>gi|167999482|ref|XP_001752446.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696346|gb|EDQ82685.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 682

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/623 (41%), Positives = 372/623 (59%), Gaps = 6/623 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV+GGGHAGCEAA  AA++GA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 23  DERFDVIVVGGGHAGCEAALAAARMGAQTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEV 82

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +GR+AD   +Q RVLN  KGPAV   R Q D+  Y L M++ I + +NL + + 
Sbjct: 83  DALGGEIGRMADRCYLQKRVLNRSKGPAVWALRAQTDKREYALEMKKIIENTKNLQIREA 142

Query: 123 EVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V       N  ++ +           +VVLTTGTF+ G I +G+  + AGR G+S S  
Sbjct: 143 MVTEILVGNNDDVTGVRTFFGVDFIAPSVVLTTGTFMNGKIWVGRSSMSAGRAGESASEG 202

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           L  +   F F+T RLKTGTPAR+D +++ +   E Q  DE +  FS      I   Q+ C
Sbjct: 203 LTENLQNFGFETDRLKTGTPARVDVRSVDFSVMEAQPGDEDVRWFSNDPLVHIEREQMSC 262

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT   TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 263 YLTRTTPATHKMINDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKDKETHQIFLEPEGR 322

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE +Q   +RT+PGLEK  ++RP YA+EYDY+   +   +L TKK+
Sbjct: 323 DVPELYVQGFSTGLPERLQLALLRTLPGLEKCTMLRPAYAVEYDYLPAHQCHRSLMTKKL 382

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQGLVAG+N+A +++    +   R  S+IG +IDDL +K +
Sbjct: 383 EGLFFSGQINGTTGYEEAAAQGLVAGVNAALRADGKSLLVLERESSFIGTLIDDLVTKDL 442

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+E+R+ LR DNAD+RLTP+G  LG + +R    F          ++ L++
Sbjct: 443 REPYRMLTSRSEHRLLLRADNADSRLTPLGRDLGLVDDRMWNLFQDKQIRIASEKNRLQT 502

Query: 481 LVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +T           +S +   +T      L  P      L +      + +S+  E ++
Sbjct: 503 TKVTPNEKIAEEVAQVSGQGIKETVALATILKRPHVHYSVLENHGYGNSELTSMEKECVE 562

Query: 538 IESSYAAYTGRQMIEAK-EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           I+  YA +  RQ  + + ++  ++ + IP D DY+S+  +S E +EKL+ ++P N+ QAS
Sbjct: 563 IDIKYAGFIMRQQGQLEQQMVHKQHKAIPDDLDYNSISTISMEAREKLTKIRPQNIGQAS 622

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+ PA +  LLI+++    +
Sbjct: 623 RIGGVNPADITALLIHLEVQRRQ 645


>gi|28198678|ref|NP_778992.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa Temecula1]
 gi|182681369|ref|YP_001829529.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa M23]
 gi|32129540|sp|Q87DB3|MNMG_XYLFT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|28056769|gb|AAO28641.1| glucose inhibited division protein A [Xylella fastidiosa Temecula1]
 gi|182631479|gb|ACB92255.1| glucose inhibited division protein A [Xylella fastidiosa M23]
 gi|307579816|gb|ADN63785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 629

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/624 (46%), Positives = 380/624 (60%), Gaps = 7/624 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIG GHAG EAA  AA+ GA T L+TH   TIG+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   ADAAGIQ+R LN  KGPAVR  R QADR LYR A+++ I  Q  L++ Q EV 
Sbjct: 68  GGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   +       +   VVLT GTFL G IHIG  +  AGRMGD P+  L   
Sbjct: 128 DLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPPATMLAAR 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
             +      RLKTGTP R+DG+T+ +   ++Q  D      SF+ +      Q+ C IT+
Sbjct: 188 LRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH II   +  S +YSG I+  GPRYCPSIEDK+VRF E+N HQIF+EPEGLN   
Sbjct: 248 TTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVID 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q + +R+I G E+ +I RPGYAIEYD+ +P+ L  +LETK I+GLF
Sbjct: 308 IYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLF 367

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR    L      R  +Y+GV++DDL + G  EPY
Sbjct: 368 FAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLITHGTNEPY 427

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG  LG + + R   F    +        L +L  T
Sbjct: 428 RMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGRLSALWAT 487

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
             N     +         +     + +  P+     L  +           V E+++I  
Sbjct: 488 PGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISV 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    +  E   IP +FDY+++  LS E+ +KL  ++P  + QA +I G
Sbjct: 548 KYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPG 607

Query: 601 MTPAALNLLLIYIKKNTVKLNEIV 624
           MTPAA++LLL+++++  ++ N + 
Sbjct: 608 MTPAAISLLLVHLER--MRRNRVA 629


>gi|325299507|ref|YP_004259424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides salanitronis DSM 18170]
 gi|324319060|gb|ADY36951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides salanitronis DSM 18170]
          Length = 623

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/623 (40%), Positives = 356/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YDVIVIG GHAGCEAAA +A LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFNYDVIVIGAGHAGCEAAAASANLGSKTCLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRAKFIWTWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V           V+LT GTFL G++HIG+  +  GR  +  S  
Sbjct: 121 DTVEELLVEDGEVKGVVTCWGVTFYARCVILTAGTFLNGLMHIGRKMLAGGRCAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+D +++ +   E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDARSVDFSLMETQDGENDFHSFSFMSEPRHLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCYTNEEVHAVLRSGLADSPLYNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   +R IP    V   RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TRELYLNGFSSSLPMDIQFAALRKIPCFRNVVAYRPGYAIEYDYFDPTQLTHTLESKVIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ+NGTTGYEEA  QG++AGIN+ +     +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFFAGQVNGTTGYEEAGGQGIIAGINAHQNCTGGEPFVLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG     R     +  +    L    K  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYRLGLAKRDRYDMLCRKREMIQHLVEFAKVY 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS------SLV 532
            + +  ++ T  S+   +        + LS P  +I+N+    P  + +           
Sbjct: 481 SIKTDKINDTLESLGTARLAHGCKLIDLLSRPQITIENIAPHIPAFQAELDKVTDRKEET 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E  ++   Y  Y  R+ + A +I   E   I   FDY++L +LS E ++KL  + P  L
Sbjct: 541 LEAAEVLIKYQGYIDRERMIADKIHRLESIKIKGRFDYANLNSLSTEARQKLIKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|269302401|gb|ACZ32501.1| glucose-inhibited division protein A [Chlamydophila pneumoniae
           LPCoLN]
          Length = 611

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/616 (45%), Positives = 379/616 (61%), Gaps = 18/616 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVVGAGHAGCEAAYCSAKMGASVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M+R + +   L ++Q  V 
Sbjct: 68  GGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLENTPGLHIMQATVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++ +IS +  ++  M    TVVL++GTF+RG+IHIG      GR+GD  S  L   
Sbjct: 128 SLLDKEGVISGVTTKEGWMFSGKTVVLSSGTFMRGLIHIGDRNFSGGRLGDPSSQGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGIT 243
             K  F   RLKTGTP RL   +I +   E+Q  D  +  F   T+       Q+ C IT
Sbjct: 188 LKKRGFPISRLKTGTPPRLLASSINFSCMEEQPGDLGVG-FVHRTEPFQPPLPQLSCFIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  II  N+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H +FLEPEGL+T 
Sbjct: 247 HTTEKTKEIISANLHRSALYGGCIEGVGPRYCPSIEDKIVKFSDKERHHVFLEPEGLHTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDYI+   + PTLE+K I GL
Sbjct: 307 EIYANGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYIHGNVIHPTLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGINAVNKVFNKPPFIPSRQESYIGVMLDDLTTQILDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFT RAE+R+ LR DNA  RL+  G +LG + E R +   K  Q     +  L+    
Sbjct: 427 YRMFTGRAEHRLLLRQDNACARLSHYGYELGLLSEERYELVKKQNQLLEEEKVRLQKT-- 484

Query: 484 TSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                      F+Q G++  +  + LS P+ S   L    P D R   +++   L++E  
Sbjct: 485 -----------FRQYGQSVVSLAKALSRPEVSYDMLREAFPNDIRDLGTVLNASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ I  + ++  E  LIP+D DY  + ALS E +EKL+   P  L  AS+I G+
Sbjct: 534 YSGYIDRQKILIQSLEKAESLLIPEDLDYKQITALSLEAQEKLAKFTPRTLGSASRISGI 593

Query: 602 TPAALNLLLIYIKKNT 617
             A + +L+I +KK+ 
Sbjct: 594 ASADIQVLMIALKKHA 609


>gi|262066109|ref|ZP_06025721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380204|gb|EFE87722.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
          Length = 633

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/628 (43%), Positives = 375/628 (59%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    + +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGRKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+D +TI +   E+Q  D  +++ FS  T   + ++ 
Sbjct: 182 EDLPLSLEKVGLKLGRFKTGTPARIDARTIDFSVLEEQPGDKSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNDKVHEIIKNARERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + I+ + G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIKNLQGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRSIDNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ IG +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKIGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N        K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILTRTSVGPSNPRVNETLLKRGENPIKDGSTLLELLRRPEVTFKDIEYISEEIKGVDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|148240756|ref|YP_001226143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 7803]
 gi|205831564|sp|A5GPI1|MNMG_SYNPW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147849295|emb|CAK24846.1| Glucose inhibited division protein A [Synechococcus sp. WH 7803]
          Length = 659

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/639 (41%), Positives = 374/639 (58%), Gaps = 20/639 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TEIFDVIVVGGGHAGCEAAITSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   + +                 I+ +     S+     VVLT GTFL G I +G 
Sbjct: 128 MVTGLEIDGDPAGGGEHWDPSQGPAARITGVRTYFGSLYGAKAVVLTAGTFLGGRIWVGH 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     F
Sbjct: 188 QSMAAGRAGEQAAEGLTEALQQLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFF 247

Query: 227 SFMTDKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF     +   Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPAAWSSGEQMSCHITRTTAATHQLIKDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +L P+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    + + F R  
Sbjct: 368 LPATQLLPSLETKRVQGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRAEEAVHFPREG 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F 
Sbjct: 428 SYIGTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWRLFE 487

Query: 466 KYIQEYNFLRSLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
             +Q     +  L+   L        +    +      + T  + L  P     +L    
Sbjct: 488 DKLQAMEAEKQRLEQQRLKVSDPAAPAVEQETGAPIKGSITLADLLRRPGMHAADLVRHG 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    V E  +I+  Y+ Y  RQ  +  ++K + +R +P+  DY+S+  LS E +E
Sbjct: 548 LADAGLPLPVREGAEIDIKYSGYLARQQQQIDQVKRQGRRKLPETIDYASISTLSREARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           KL+ ++P  L QAS+I G++ A L  LL++++    +  
Sbjct: 608 KLTAVRPLTLGQASQIPGVSQADLTSLLMWLELQQRRSQ 646


>gi|88705406|ref|ZP_01103117.1| Glucose-inhibited division protein A [Congregibacter litoralis
           KT71]
 gi|88700496|gb|EAQ97604.1| Glucose-inhibited division protein A [Congregibacter litoralis
           KT71]
          Length = 618

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/595 (44%), Positives = 371/595 (62%), Gaps = 5/595 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G +T L+TH   T+G MSCNPAIGG+GK HLVREIDAL G M +  D AGIQFRVLN +
Sbjct: 1   MGCATLLLTHSVDTLGQMSCNPAIGGIGKSHLVREIDALGGAMAKATDQAGIQFRVLNNR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QADR LYR A++  I +Q  L V Q  V     E + +  +V Q     +
Sbjct: 61  KGPAVRATRAQADRVLYRNAIRAIIEAQVGLQVFQQAVDDLIIENDTVQGVVTQTGLRFK 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGTFL G +HIG  +   GR GD PSN+L     +  F   RLKTGTP RLD 
Sbjct: 121 APRVILTTGTFLGGKMHIGLTRSAGGRAGDPPSNTLAERLRELPFRVERLKTGTPPRLDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSG 265
           ++I  D  EKQ+ D      SF+ D+  +  Q  C +  TN  TH II   +  S +Y+G
Sbjct: 181 RSIDLDSLEKQWGDTPRPVMSFLGDRREHPEQRCCWVAYTNERTHEIIRAGLDRSPLYTG 240

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPS+EDK+ RF ++  HQ+F+EPEGL T+ +YPNGIST+L  ++Q + +R+
Sbjct: 241 VIEGEGPRYCPSVEDKVQRFADKASHQVFVEPEGLTTNELYPNGISTSLSFDVQMELVRS 300

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G E  +I RPGYAIEYD+ +P++L  +LET+ ++GL+ AGQINGTTGYEEAAAQGL+A
Sbjct: 301 IKGFENAHITRPGYAIEYDFFDPRDLLSSLETRSVAGLYFAGQINGTTGYEEAAAQGLLA 360

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    +    C  R ++Y+GV++DDL + G  EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 361 GINAALAIREEAPWCPRRDEAYLGVLVDDLITMGTKEPYRMFTSRAEHRLLLREDNADLR 420

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI---SFKQDGKTR 502
           LT  G KLG + + R ++F++        +  L    +   + ++ S+     K   +  
Sbjct: 421 LTEQGRKLGLVNDERWEQFSRKRDIIVSEQQRLSRTFVQPGSTAARSLIGKLGKPLSREY 480

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
           +  E L  P+    ++ ++  DA       + ++ I++ YA Y  RQ  E   ++  E  
Sbjct: 481 SYAELLKRPELDYSDIAALDSDAVDHEQAAL-QVSIQAKYAGYIDRQRDEIDRVRRYEGL 539

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            +P D DY  +  LSNE+++KL   KP  L +AS+I G+TPAA++LLL+++K+  
Sbjct: 540 SLPVDMDYLQVSGLSNEVRDKLIAQKPETLGRASRIPGVTPAAISLLLVHMKRKK 594


>gi|332519444|ref|ZP_08395911.1| glucose inhibited division protein A [Lacinutrix algicola 5H-3-7-4]
 gi|332045292|gb|EGI81485.1| glucose inhibited division protein A [Lacinutrix algicola 5H-3-7-4]
          Length = 623

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/626 (43%), Positives = 381/626 (60%), Gaps = 14/626 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA AA +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNEVYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    +  +   +NLD  
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLEQTQNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E   +  +       ++  +VVLT GTFL G+IHIG      GR G+  + 
Sbjct: 121 QEMVSGLVVENGKVVGVKTSLGITVKAKSVVLTNGTFLNGLIHIGDKNFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            +    ++  F++GR+KTGTP R+DG+++ + K  +Q  D     FS++ T K    Q  
Sbjct: 181 GITEQLIELGFESGRMKTGTPPRVDGRSLDYSKMIEQPGDLNPEKFSYLDTTKPLENQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CFMTYTSEKVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q   +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEMYINGFSTSLPEDVQFNALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLYFAGQINGTTGYEEAASQGLMAGINAALKVQEKDSFILQRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G  LG   E+R KR  + +   N      K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADIRLTPRGYDLGLASEKRLKRMEEKLNASNQFVQFFK 480

Query: 480 SLVLTSKNLS-----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFS 529
              +T+ + +       S S KQ GK    ++  + P+  + ++                
Sbjct: 481 DTSVTANDANVVLESKNSASVKQQGK---MFKLFARPNIDMDDMRKFEKVETYIQENNLD 537

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+E+ +I+  YA Y  ++   A ++   E   IP +F+YS L ++S E +EKL+ ++P
Sbjct: 538 REVLEQAEIQVKYAGYISKEKNNADKLNRLENIKIPANFNYSQLKSMSLEAREKLNKIQP 597

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QAS+I G++PA +++LL+++ +
Sbjct: 598 VTISQASRISGVSPADISVLLVFMGR 623


>gi|83591334|ref|YP_431343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Moorella thermoacetica ATCC 39073]
 gi|123725614|sp|Q2RFI9|MNMG_MOOTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83574248|gb|ABC20800.1| glucose inhibited division protein A [Moorella thermoacetica ATCC
           39073]
          Length = 630

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 379/622 (60%), Gaps = 5/622 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIG GHAGCEAA  AAKLG  T ++T    +I  M CNP+IGG  KGHLVREIDA
Sbjct: 6   NYDVIVIGAGHAGCEAALAAAKLGCRTLMLTISLESIAMMPCNPSIGGPAKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG   D + IQ R LN  KGPAVR  R QAD++LY+  M   +  QE+LDV Q EV
Sbjct: 66  LGGIMGLNIDRSRIQIRRLNSGKGPAVRALRAQADKKLYQREMTLTLERQEHLDVKQAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +  ++ +  +   C  +VLTTGT+LRG I IG++    G  G  P+  L  
Sbjct: 126 IRILTESGRVKGVLTRTGAYFACRAIVLTTGTYLRGRIIIGEVAYAGGPNGQFPAIELAA 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +     GR KTGTP R+ G++I WDK  +Q  D   + FSF  +      + C +T 
Sbjct: 186 SLKELGLRMGRFKTGTPPRVSGRSINWDKMTEQPGDPGPLRFSFWEEGPERPNVSCWLTH 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II +N+  + ++SG I+  GPRYCPSIEDK+VRF ++ GHQIFLEPEG+ T+ 
Sbjct: 246 TNTTTHNIIKDNLHRAPLFSGLIEGKGPRYCPSIEDKVVRFADKPGHQIFLEPEGMGTEE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G+ST+LPE++Q   + ++PGLE+  ++RPGYAIEYDYI+P +L  +LE K I+GLF
Sbjct: 306 WYVQGLSTSLPEDVQLAVLHSVPGLEQAEMMRPGYAIEYDYIDPTQLKASLECKHIAGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAGIN+AR   + + +   R  +YIGV+IDDL ++GV EPY
Sbjct: 366 TAGQINGTSGYEEAAAQGLVAGINAARLVREQEPLILRRDQAYIGVLIDDLVTRGVTEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL  IG ++G + E+R ++     +  N     L    + 
Sbjct: 426 RLLTSRAEHRLLLREDNADLRLGRIGYEIGLLDEQRFRKLEAKEKAINDGLVYLGKQHVG 485

Query: 485 SKNLSSTSI----SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             N     I           T +  + +  P    Q+L +      +    +   +++  
Sbjct: 486 GNNPKIQEIIVACGEPPLKGTTSLKDLMRRPRIKYQDLAAAGL-VPELPPEIAAEIEMMV 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  ++ I+ + +   E R++P D +YS +  LS E  + L  +KP +L QA +I G
Sbjct: 545 KYEGYIAKEKIQVERLAKLEARVLPADLNYSEIRGLSRESIDHLERVKPRSLGQALRIPG 604

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           +TPA +++LL+Y+++   +  +
Sbjct: 605 VTPADISVLLVYLEQKKREGAK 626


>gi|302393074|ref|YP_003828894.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
 gi|302205151|gb|ADL13829.1| glucose inhibited division protein A [Acetohalobium arabaticum DSM
           5501]
          Length = 625

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 3/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAGCEAA  AA++   T L+T     I  M CNP+IGG  KGH+VREID
Sbjct: 2   KEYDVIVIGAGHAGCEAALAAARMECKTLLLTLNVDHIALMPCNPSIGGPAKGHIVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + I  ++LN  KGPAV   R QAD+ +Y+L M + +  Q++LD+ Q  
Sbjct: 62  ALGGQMAENIDKSYINIQLLNTSKGPAVHALRAQADKHIYQLEMTKTLQKQDDLDLKQSV 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   ++ +        +   +VLTTGT L G + IG +K   GR G+  +  L 
Sbjct: 122 VTELTADGQSVTGVKTITGMEYQADKIVLTTGTSLDGKVIIGDVKYVGGRQGEFAAVELS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +S  +      R +T TP R+   ++ + K   Q   E  + FSF   +I   Q  C +T
Sbjct: 182 DSLKELGLTLERFQTATPPRVHRDSMNFSKMTAQPGSEEPLQFSFSKPRIEREQTPCWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T +II E I+ S + +G I+  GPRYCPSI+ KI+RF ++  HQ+F+EPEGLNT 
Sbjct: 242 YTTDDTKQIIKEKIEKSPLSTGIIEGEGPRYCPSIDRKIMRFPDKTSHQVFIEPEGLNTK 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG++TA+PEE Q   +R++PGLE+  I+RP YA+EYDY+ P +L PTLETK+++GL
Sbjct: 302 EMYVNGLTTAMPEEDQVDILRSVPGLEEAEIMRPAYAVEYDYLPPTQLRPTLETKEVNGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+AR     + I   R+++YIGV+IDDL ++G  EP
Sbjct: 362 YTAGQINGTSGYEEAAGQGLMAGINAARDLQNKEPIILKRSEAYIGVLIDDLITEGTDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RLTP+G ++G + E    R     ++    +  L+S+ +
Sbjct: 422 YRMLTSRAEYRLVLRHDNADLRLTPVGYEIGLVEEEVYNRVKDKEEKLEEGQDYLESIQI 481

Query: 484 TSKNLSSTSISFKQDG---KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                    +   + G   K  +    L  P+    +L        +F   + E+++IE 
Sbjct: 482 NPTKEVRQKLKEFESGGLKKPVSLATLLKRPELEYDDLNLFDDQLPEFDEHIKEQIEIEV 541

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  + K+ +  E++LIP+D DY  L  L  E +EKL+ +KP +L QAS+I G
Sbjct: 542 KYEGYIKRQKQQIKKFQQMEEKLIPEDIDYHQLDNLRTEAREKLAEIKPVSLGQASRISG 601

Query: 601 MTPAALNLLLIYIKKNTVKLNE 622
           ++PA +++L+IY+++   +  +
Sbjct: 602 VSPADISVLMIYLEEYRQQGED 623


>gi|320354723|ref|YP_004196062.1| glucose inhibited division protein A [Desulfobulbus propionicus DSM
           2032]
 gi|320123225|gb|ADW18771.1| glucose inhibited division protein A [Desulfobulbus propionicus DSM
           2032]
          Length = 627

 Score =  720 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/625 (46%), Positives = 380/625 (60%), Gaps = 12/625 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI+  +D+ VIG GHAGCEAA  AA++G ST +      TIG+MSCNPAIGGL KGHLV+
Sbjct: 1   MID--FDIAVIGAGHAGCEAALAAARMGCSTLVCVINADTIGAMSCNPAIGGLAKGHLVK 58

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M +  DA GIQFR LN  KGPAVR  R QADR LYRL M+  + +Q NL + 
Sbjct: 59  EIDALGGEMAKNIDATGIQFRRLNTSKGPAVRSSRAQADRLLYRLRMKHILENQPNLAIR 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +    +  +R   +V+ TGTFL G+IH+G    PAGRMGD+PS 
Sbjct: 119 QAVVDEILIENGRVVGLRTSLDECVRVRAIVVATGTFLNGLIHVGLKNFPAGRMGDAPST 178

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L   F    F  GR+KTGT  RLDG +I + +   Q++DE+   FSF +       Q  
Sbjct: 179 KLAQWFASTGFTVGRMKTGTVPRLDGNSIDYSQLVAQYSDEQPALFSFSSHGAPPLVQRP 238

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH II ++I  S +Y+G I+  G RYCPSIEDK++RF E+  HQIFLEPEG
Sbjct: 239 CYITYTNERTHDIIRQSIHQSPMYAGIIEGVGARYCPSIEDKVMRFPEKVRHQIFLEPEG 298

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  VYPNGI T+LP   Q + + +I GLE   IIRPGYAIEYDY++P+EL P+LETKK
Sbjct: 299 LETIEVYPNGIPTSLPLATQIEMVHSIQGLEHARIIRPGYAIEYDYVDPRELKPSLETKK 358

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLFLAGQINGT+GYEEAA QGL+A INS +     + +   R+ +Y+GV+IDDL + G
Sbjct: 359 IVGLFLAGQINGTSGYEEAAGQGLMAAINSVQYVRGEEPVILDRSQAYLGVLIDDLVTLG 418

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RL PIG ++G + E     F    +  + +   L 
Sbjct: 419 TKEPYRLFTSRAEYRLLLREDNADMRLRPIGHRIGLVDEPTWHEFVHKKEYISRVLHYLH 478

Query: 480 SLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI---CPDARKFSSLVI 533
              +      N    + +     +  T  E L  P+  +  L  +         F    +
Sbjct: 479 ETRIKPVPGINAFLAAHNAPALSQAMTLAELLRRPEIRLHMLAQMSRAVDSLPPFPEEAL 538

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              + ++++  Y  Y  RQ  +    K  E   +P    Y  LP LSNE+ EKL+ ++P 
Sbjct: 539 AFHDEIELQIKYEGYIKRQEEQISRFKKLESIELPPGLVYKGLPGLSNEVVEKLTRVQPR 598

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           +L QAS+I G+TPAAL++L +++K+
Sbjct: 599 SLGQASRISGVTPAALSVLQVHLKR 623


>gi|312131266|ref|YP_003998606.1| glucose inhibited division protein a [Leadbetterella byssophila DSM
           17132]
 gi|311907812|gb|ADQ18253.1| glucose inhibited division protein A [Leadbetterella byssophila DSM
           17132]
          Length = 620

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/621 (43%), Positives = 384/621 (61%), Gaps = 7/621 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+G GHAGCEAA  AA +G+   LIT    TI  MSCNPA+GG+ KG +VR
Sbjct: 1   MFSK-YDVIVVGAGHAGCEAAHAAATMGSEVLLITMNLQTIAQMSCNPAMGGVAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+ G V+D   IQFR+LN  KGPA+  PR Q+DR  + L  + ++     +   
Sbjct: 60  EIDALGGMSGIVSDETMIQFRMLNRSKGPAMWSPRCQSDRMEFALNWRDKLERNPKVSFW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + NI+  +       I   TVVLT GTFL G IHIG+     GR G+S + 
Sbjct: 120 QEMVTDILVKDNIVYGVKTSLGLEIHAKTVVLTNGTFLNGKIHIGEKNFGGGRTGESAAF 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F++GR+KTGTP R+DG+TI ++  ++Q  DE    FS+       +Q  C
Sbjct: 180 GITEKLVSLGFESGRMKTGTPPRVDGRTINYEAMQEQLGDENPEKFSYTDTPKLEKQNSC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ TNL  H  + +    S +++G IK  GPRYCPS+EDKI RF E++ HQIFLEPEG 
Sbjct: 240 WISYTNLAVHEELRKGFDKSPMFNGRIKGLGPRYCPSVEDKINRFAEKDSHQIFLEPEGR 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG ST+LPE+IQ++ IR IPG E V ++RPGYAIEYDY  P +L  TLET+++
Sbjct: 300 TTIEMYVNGFSTSLPEDIQYKAIRKIPGFENVKLLRPGYAIEYDYFPPTQLKLTLETQRV 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA AQGL+AGIN+ RK+++L      R ++YIGV+IDDL +KG 
Sbjct: 360 ENLFFAGQINGTTGYEEAGAQGLIAGINAHRKAHELSAFILKRDEAYIGVLIDDLVNKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R  LR DNAD RLT  G ++G   + R  R  + I+    L   L++
Sbjct: 420 DEPYRMFTSRAEFRTILRQDNADIRLTKKGYEIGLANKERLDRVEEKIKNSEELIHKLET 479

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFS---ICPDARK-FSSLVIE 534
             L+ + ++   T I+     +  T    +  P+  I+ L     +  +    ++    E
Sbjct: 480 TKLSPEEINPYLTKINSSPLREKSTISSLIKRPEIGIKELEEGNVLVQEITNTYTKEQKE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           + +I+  Y  Y  ++++ A++I   ++  +  +FDY +L +LS E ++KL+  KP NL Q
Sbjct: 540 QAEIKIKYEKYIEKELLMAEKIAKLDEVKLNTEFDYMALKSLSIEARQKLTAAKPMNLGQ 599

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++PA +++L++Y+ +
Sbjct: 600 ASRISGVSPADISVLMLYLGR 620


>gi|297748628|gb|ADI51174.1| Glucose inhibited division protein A [Chlamydia trachomatis D-EC]
 gi|297749508|gb|ADI52186.1| Glucose inhibited division protein A [Chlamydia trachomatis D-LC]
          Length = 613

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 10  DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 70  LGGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 129

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 130 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 189

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       Q+ C I
Sbjct: 190 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQVSCHI 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 249 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 309 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 369 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 429 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 488

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 489 ------------RKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 537 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 596

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 597 SVADIQVLMVSLKK 610


>gi|15605227|ref|NP_220013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis D/UW-3/CX]
 gi|237802927|ref|YP_002888121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237804849|ref|YP_002889003.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|288561914|sp|P0CD73|MNMG_CHLTR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3328935|gb|AAC68099.1| FAD-dependent oxidoreductase [Chlamydia trachomatis D/UW-3/CX]
 gi|231273149|emb|CAX10062.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274161|emb|CAX10955.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436959|gb|ADH19129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/11222]
          Length = 610

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 67  LGGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       Q+ C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQVSCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 486 ------------RKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|255311316|ref|ZP_05353886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 6276]
 gi|255317617|ref|ZP_05358863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 6276s]
 gi|296436031|gb|ADH18205.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/9768]
 gi|296437892|gb|ADH20053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/11074]
 gi|297140392|gb|ADH97150.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis G/9301]
          Length = 610

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 67  LGGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       Q+ C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQVSCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFVEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 486 ------------RKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|308270192|emb|CBX26804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [uncultured Desulfobacterium sp.]
          Length = 635

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/617 (44%), Positives = 375/617 (60%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +++YD+IV+G GHAGCEAA  AA++G S  L+      + +M C+P++GG+ KG LV+
Sbjct: 3   LYSKNYDIIVVGAGHAGCEAALSAARMGCSVLLVAIDLDKLAAMPCSPSVGGMAKGQLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M R++D + IQ+R LN KKGPAV   RTQ D+  Y  AM+  +  Q  LD+ 
Sbjct: 63  EVDALGGEMARISDKSAIQYRTLNTKKGPAVHSSRTQNDKLRYHTAMKAVVEKQPGLDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   I+ I+           VVL TGTFL G+IHIG   + AGR G+  S 
Sbjct: 123 QVFVERLLVENGKITGIIDYTGYCYMAKAVVLATGTFLSGLIHIGANSMKAGRAGEFASY 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL  +  +  F+ GR+KTGTP RL   +I +    +Q ++    PFSF T+ I+  Q+  
Sbjct: 183 SLAQNLKELGFNLGRMKTGTPPRLHKSSIDFTVFSRQDSESDPTPFSFFTNSISLPQMPS 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  T+++T  I+++N+K SA+Y G IK    RYCPS EDKIV+F ER  H + LEPEGL
Sbjct: 243 YMGHTSVKTREIVLKNLKFSALYGGIIKGVSARYCPSFEDKIVKFPERETHHVILEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y +G+  +LP EIQ Q +R+I GLE+  IIRP YAIEYDYINP  L  TLETK I
Sbjct: 303 DTEEIYASGLGNSLPVEIQIQLVRSIKGLEEAQIIRPAYAIEYDYINPVNLKQTLETKLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGT+GYEEAAAQGL AGIN++    K       R+ +YI VM+DDL +KG 
Sbjct: 363 SGLFLAGQINGTSGYEEAAAQGLWAGINASCLVQKRPPFILDRSQAYIAVMVDDLVTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYR+ LR DNAD RL   G +LG I +   K   +  ++     + +KS
Sbjct: 423 LEPYRMFTSRAEYRLMLREDNADLRLMEAGHELGLIDDDTIKELNERRKQIQAETARIKS 482

Query: 481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +V+      +  +               + L         +  +          V ++++
Sbjct: 483 VVIKPSKEVNLFLESRGTNPIDNGVYLDQLLKRTQLDYSAVCVLAGGCENIDPKVSKQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  RQ  E  + K  E+  I + FD+S +  LSNELKEKL+ +KP +L QAS+
Sbjct: 543 IGVKYEGYIERQQKEIDKFKNLERIKIKEGFDFSHVHGLSNELKEKLNEIKPASLGQASR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           I+GMTPAA+++L+I +K
Sbjct: 603 IDGMTPAAVSVLMIALK 619


>gi|237739895|ref|ZP_04570376.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 2_1_31]
 gi|229423503|gb|EEO38550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 2_1_31]
          Length = 633

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 378/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAVFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLTVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V+L TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKVIKGIKIREGLEYRAKIVILATGTFLRGLIHIGEVNFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D  +++ FS  T   + ++ 
Sbjct: 182 EELPLSLEKVGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDKSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNDKVHEIIKNARERSPMFNGKIQGLGPRYCPSIEDKVFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + IR + G E   ++R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIRNVKGFENAKVMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEAIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ +G +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKLGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   NL       K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILTKTNVGPSNLRVNETLLKRGENPIKDGSTLLELLRRPEVTFEDIVYISEEIKGVDLK 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY +L  +  E K+KL  
Sbjct: 542 GYDHDTSYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDALKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|325286235|ref|YP_004262025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga lytica DSM 7489]
 gi|324321689|gb|ADY29154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga lytica DSM 7489]
          Length = 622

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/622 (42%), Positives = 390/622 (62%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+GGGHAG EAAA AA LG+ T L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKEYDVIVVGGGHAGAEAAAAAANLGSKTLLVTMNLQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G ++D + IQF++LN  KGPA+  PRTQ DR  +    +  +    N D  
Sbjct: 61  EIDALGGYSGIISDKSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALERTPNCDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E + +  +       IR  +VVLT GTFL G+IHIG+ ++  GR G+  + 
Sbjct: 121 QEMVSGLIIEGDKVCGVTTSLGIEIRSKSVVLTNGTFLNGLIHIGERQLGGGRAGEKSAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F++GR+KTGTP R+DG+++ + K   Q  D     FS+   K    Q +C
Sbjct: 181 GITEQLVDLGFESGRMKTGTPPRVDGRSLDYSKMIVQPGDVIPEKFSYTDTKSLAHQRDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 241 FMTHTSTLVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDKHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK +
Sbjct: 301 DTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + L+ AGQINGTTGYEEAA+QGL+AGIN+ +K  + + +  +R ++YIGV+IDDL +KG 
Sbjct: 361 NNLYFAGQINGTTGYEEAASQGLMAGINAHQKVKENEPLILNRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLTP+G K+G   + R KR  + +Q+ +   +  + 
Sbjct: 421 EEPYRMFTSRAEYRTLLRQDNADIRLTPLGHKIGLASDSRLKRMEEKLQKSDAFVNFFRE 480

Query: 481 LVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVI 533
             +  ++++    S       ++   ++  S P+ ++ ++  +       +A      V+
Sbjct: 481 TSVVPEDINPILESVNSTPVKQSHKMFKSFSRPNVTMDHMRKLKSVSEFIEAENIDREVM 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +I+  YA Y  ++   A +++  E   IP+ FDY  L +LS E +EKL  ++P  + 
Sbjct: 541 EQTEIQVKYAGYIAKEKNNADKLQRLENIKIPEGFDYRQLKSLSYEAREKLEAIRPVTIS 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++LL+++ +
Sbjct: 601 QASRISGVSPSDISVLLVFMGR 622


>gi|316931725|ref|YP_004106707.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           DX-1]
 gi|315599439|gb|ADU41974.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           DX-1]
          Length = 622

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/589 (52%), Positives = 412/589 (69%), Gaps = 1/589 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADA GIQFR+LN +KGPAVR
Sbjct: 32  LVTHRYATIGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAGGIQFRMLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  I +  NL VI+GE          ++ I + D   +  + VV+
Sbjct: 92  GPRAQADRKLYAAAMQTAIFATPNLSVIEGEADVLLWRDGRVTGIRLGDGRELAAAAVVI 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IH+G+   PAGR+ ++P+  L  SF    F  GRLKTGTPARLDG+TI W 
Sbjct: 152 TTGTFLRGLIHLGERSWPAGRIDEAPAMGLSGSFEALGFTLGRLKTGTPARLDGRTIDWG 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T  IT  QIECGITRT   TH +I  N+  S +YSG I+S GP
Sbjct: 212 AVEMQPGDDPPEPFSVLTPAITTPQIECGITRTTPATHEVIRANVHRSPMYSGQIQSTGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FG+R+GHQIFLEPEGL+   VYPNGIST+LPEE+Q   ++TIPGLE+ 
Sbjct: 272 RYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEEVQRAILKTIPGLEQT 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            + RPGYAIEYD+++P+EL PTL+T+++ GLFLAGQINGTTGYEEAAAQGLVAG+N+A  
Sbjct: 332 EMFRPGYAIEYDHVDPRELEPTLQTRRLRGLFLAGQINGTTGYEEAAAQGLVAGLNAALA 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D   F R D Y+GVMIDDL ++G+ EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 392 AGGGDQAVFDRADGYLGVMIDDLVTRGIAEPYRMFTSRAEYRLTLRADNADQRLTDKGVS 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+GE R       +      R+L +SL +T    +   ++  +DG+ R+A++ LSYP+
Sbjct: 452 LGCVGEERSAFHRGKMAALFEARALAQSLAITPNEAAKYGLALNRDGQRRSAFDLLSYPE 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                + +I P+  K   ++   ++I++ Y  Y  RQ  + +  + +E   +  D DY++
Sbjct: 512 IDWAQVRAIWPELGKVDPVIATHVEIDAKYHVYLERQTADVEAFRRDESLRL-TDVDYAA 570

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P LSNE + +L   +P  + QA +++G+TPAAL +L  Y+++   K  
Sbjct: 571 VPGLSNEARTRLERHRPHTVGQAGRLDGITPAALGILAAYLRREERKRK 619


>gi|91974910|ref|YP_567569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisB5]
 gi|123763117|sp|Q13E21|MNMG_RHOPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|91681366|gb|ABE37668.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisB5]
          Length = 626

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/623 (53%), Positives = 438/623 (70%), Gaps = 1/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRNSYDVIVIGGGHAGCEAAAAAARLGATTALVTHRFATIGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  +L VI+
Sbjct: 61  VDALDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQAAIRATVHLSVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE     +    ++ I + D        VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADALLSADGRVTGIRLADGREFAAGAVVITTGTFLRGLIHLGEQSWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF    F  GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECG
Sbjct: 181 LSRSFEALGFALGRLKTGTPPRLDGRTIDWGAVEMQPGDDPPEPFSVLTPAITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I +N+  S +YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTPATHAVIRDNVHRSPMYSGQIQSTGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   ++TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILKTIPGLERTELVRPGYAIEYDHVDPRELEPTLQTKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+   +   D   F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAVLAAGGGDPAVFDRADGYLGVMIDDLVTRGIN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGLALGCVGAERAAFHRTKMAALADAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    S   +S  +DG+ R+A++ LSYP+     + +I P+    S  +   ++I++ 
Sbjct: 481 SITPNEASRHGLSLNRDGQRRSAFDLLSYPEIGWDEVKAIWPELAAVSPAIAVHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  L+  + DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YHVYLARQTADVEAFRRDEGLLL-TEIDYAQVPGLSNEARNRLERHRPRTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           TPAAL +L  Y+++   K    V
Sbjct: 600 TPAALGILAAYLRREARKRPATV 622


>gi|261878875|ref|ZP_06005302.1| glucose-inhibited division protein A [Prevotella bergensis DSM
           17361]
 gi|270334515|gb|EFA45301.1| glucose-inhibited division protein A [Prevotella bergensis DSM
           17361]
          Length = 624

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 375/624 (60%), Gaps = 9/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDVIVIGGGHAGCEAA  AA LGA T L+T   + I  MSCNPA+GG+ KG LVR
Sbjct: 1   MKDFNYDVIVIGGGHAGCEAATAAANLGAKTCLVTMDMNKIAQMSCNPAVGGIAKGQLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG+V DA  IQFR+LN  KGPAV  PR Q DRE Y +  +R +    NLD+ 
Sbjct: 61  EIDALGGFMGKVTDATAIQFRMLNKGKGPAVWSPRAQCDREKYIVEWRRVLDRTPNLDIW 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +     T       +       IR   VV+T GTFL G++HIG+ + P GR  +    
Sbjct: 121 QDQADELLTVHGEAVGVRTVWGVEIRAKAVVVTAGTFLNGLMHIGRKQYPGGRCAEPAVL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
               S  ++    GR+KTGTP RLD ++I ++ TE+Q  +     FS++  + T +Q+ C
Sbjct: 181 HFTESITRWGVRAGRMKTGTPVRLDKRSIHFEDTEEQPGENDFHKFSYLWSQPTLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN + H I+ E+I +S +Y+G I+S GPRYCPSIE K+V F +R+ H +F+EPEG 
Sbjct: 241 WTCSTNSDAHEILREDIANSPLYNGQIESIGPRYCPSIETKLVTFPDRDSHPLFIEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y NG S+++P E Q + +  IP L +  I RPGYAIEYDY +P +L  +LE+K I
Sbjct: 301 DTNEMYLNGFSSSMPLETQLKALHQIPALREAKIYRPGYAIEYDYFDPTQLKHSLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF+AGQ+NGTTGYEEA AQG+VAG+N+A   +  +     R +SYIGV+IDDLT+KGV
Sbjct: 361 KGLFMAGQVNGTTGYEEAGAQGIVAGVNAALHCSGNEPFVMRRDESYIGVLIDDLTTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +  + +    K+
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADARLTEKAYELGLASRERLDWWLEKKEAIDRMIQYCKN 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-------FSSL 531
             +  K ++S   ++            + +  P  +++ L  I P  ++        +  
Sbjct: 481 TSVKPKEINSSLEALGIPPLRMGCKLTDLIGRPQLNMKVLAEIIPGLKEQMESPRNRAEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E ++I   Y  Y  R+ + A ++   E   I   F+Y  L  +S E ++KL  + P  
Sbjct: 541 IVEGVEIRIKYRGYIEREKLIADKMHRLENIRIKGKFNYQDLKEISTEGRQKLERIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +N+LL+ + +
Sbjct: 601 LGQASRIPGVSPSDINVLLVLMGR 624


>gi|329942441|ref|ZP_08291251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila psittaci Cal10]
 gi|332287082|ref|YP_004421983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci 6BC]
 gi|313847678|emb|CBY16666.1| putative division protein a [Chlamydophila psittaci RD1]
 gi|325506475|gb|ADZ18113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci 6BC]
 gi|328815351|gb|EGF85339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila psittaci Cal10]
 gi|328914316|gb|AEB55149.1| glucose-inhibited division protein A [Chlamydophila psittaci 6BC]
          Length = 611

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 379/617 (61%), Gaps = 18/617 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  +++    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILSSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESCPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGIAYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSL 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F   ++       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGD-PGVGFVHRSEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG++T
Sbjct: 246 THTTEKTKEIIAANIHRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDMIRSVRGLENAIITRPAYAIEYDYVHGNVIYPTLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFVPSRQESYIGVMLDDLTTQILDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F    Q     +  L    
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGHDLGLLSKERYEIFEHQKQIIEEEKLRLSKT- 484

Query: 483 LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
                       FK+ G +  +  + L  P+ S   L    P D R + S +   L++E 
Sbjct: 485 ------------FKKYGNSVVSLAKALCRPEVSYDALKEAFPEDVRDYGSTLNASLEMEI 532

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I G
Sbjct: 533 KYAGYIDRQKALIHSLSKSENMIIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRISG 592

Query: 601 MTPAALNLLLIYIKKNT 617
           +  A + +L++ +KK+ 
Sbjct: 593 IACADIQVLMVAVKKHA 609


>gi|284049396|ref|YP_003399735.1| glucose inhibited division protein A [Acidaminococcus fermentans
           DSM 20731]
 gi|283953617|gb|ADB48420.1| glucose inhibited division protein A [Acidaminococcus fermentans
           DSM 20731]
          Length = 626

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/614 (42%), Positives = 365/614 (59%), Gaps = 4/614 (0%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA++G  T L T     I  M CNP++GG  KGHLVREIDAL G MG 
Sbjct: 13  GAGHAGCEAALAAARMGQKTLLATLSMDNIALMPCNPSVGGPAKGHLVREIDALGGQMGL 72

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
            AD A IQ R+LN  KG AV+  R QAD+ LY   M+  + +Q+NLDV Q  +     + 
Sbjct: 73  AADEACIQMRMLNTGKGYAVQALRAQADKPLYHTIMKEVVENQDNLDVKQLMIDKLLVKN 132

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             +  +  +   +     V+L TGT+LRG I  G++   +G +G   +  L  S  +   
Sbjct: 133 GQVQGVEAETGEVFEADAVILCTGTYLRGKILYGEVAYMSGPIGQRSAMKLTGSLQEAGL 192

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHR 251
              R KTGTPAR+D +T+ + K E Q+ DER+  FSFM+   T  Q+ C +T TN  TH+
Sbjct: 193 QLMRFKTGTPARVDARTLDYTKMEPQYGDERVRNFSFMSTITTRNQVPCYLTYTNPRTHQ 252

Query: 252 IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS 311
           II +N+  S +++G I+  GPRYCPSIE KI+RF +++ HQ+FLEPEGL T+ VY  G+S
Sbjct: 253 IIRDNLDRSCMFNGMIEGVGPRYCPSIESKIIRFADKDRHQLFLEPEGLRTNEVYVQGMS 312

Query: 312 TALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING 371
           ++LP EIQ  F++TIPGLE   ++R GYAIEYD ++P +L   LE K ISGLF AGQ NG
Sbjct: 313 SSLPAEIQVAFMQTIPGLEHCKMMRAGYAIEYDCLDPLQLKANLEHKAISGLFSAGQANG 372

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
           T+GYEEAAAQGL+AGIN+A K      +   R+D+YIGV+IDDL +KG  EPYRM TSRA
Sbjct: 373 TSGYEEAAAQGLMAGINAALKLQGKKPLILKRSDAYIGVLIDDLVTKGTTEPYRMMTSRA 432

Query: 432 EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS- 490
           EYR+ LR DNAD RLT  G  +G + + R   F +           L  + L     +  
Sbjct: 433 EYRLLLRQDNADLRLTQKGRDVGLVTDDRYAAFTRKRDVIERTLFNLSKINLAPSEENQE 492

Query: 491 --TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGR 548
             T +       +    + L  P+ + + L        K      E++ ++  Y  Y  +
Sbjct: 493 KVTGMGSTALRSSINMLDLLRRPEVTYEKLADAF-GLEKLPVDAAEQVDVQVKYQGYIRK 551

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q  E +     E +L+P+D DY+ +  LS+E  EKL+  +P ++ QAS+I G++PA +++
Sbjct: 552 QKQEVERALKLEDKLLPEDMDYTKIQELSSEAMEKLTKQRPVSIGQASRISGVSPADISV 611

Query: 609 LLIYIKKNTVKLNE 622
           L+++++    K  E
Sbjct: 612 LMVWLETQRRKGEE 625


>gi|33866912|ref|NP_898471.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. WH 8102]
 gi|81170585|sp|Q7U3P8|MNMG_SYNPX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33639513|emb|CAE08897.1| glucose inhibited division protein A [Synechococcus sp. WH 8102]
          Length = 641

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/626 (43%), Positives = 377/626 (60%), Gaps = 8/626 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+AD   IQ R+LN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADGTAIQKRILNASRGPAVWALRAQTDKRLYSHQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V G  T    ++  IS I     S+     V+LT GTFL G I +G   + AGR G+  
Sbjct: 128 MVTGLETTAEADQQRISGIRTYFGSVYGAEAVILTAGTFLGGRIWVGHQSMAAGRAGEQA 187

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q
Sbjct: 188 AEGLTEALQQLGFQTDRLKTGTPARVDRRSIALDQLEEQPSDAADHFFSFDPAAWVSGEQ 247

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIFLEP
Sbjct: 248 MSCHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIFLEP 307

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 308 EGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLET 367

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYIG MIDDL S
Sbjct: 368 KRVRGLFSAGQLNGTTGYEEAAAQGLVAGVNAARHIGGQEPVHFPREGSYIGTMIDDLVS 427

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYR+ TSR+EYR+ LR DNAD RLTP+G  LG I +RR + F   +Q     +  
Sbjct: 428 KDLREPYRVLTSRSEYRLILRGDNADRRLTPLGRDLGLIDDRRWQLFEDKLQAMEREKQR 487

Query: 478 LKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+++ L        +    +      + T  + L  P     +L             V E
Sbjct: 488 LETVRLKVSDPVAPAVEEETGAAIKGSITLADLLRRPGMHAADLVRHGLADADLPLPVRE 547

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+ +  LSNE +EKL  ++P  L Q
Sbjct: 548 GAEIDIKYSGYLQRQQQQIDQVKRQSQRKLPADLNYAGIGTLSNEAREKLGSIQPTTLGQ 607

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKL 620
           AS+I G++ A +  LL++++    + 
Sbjct: 608 ASRIPGVSQADITALLMWLELRKREA 633


>gi|303256377|ref|ZP_07342391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderiales bacterium 1_1_47]
 gi|302859868|gb|EFL82945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Burkholderiales bacterium 1_1_47]
          Length = 649

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/631 (46%), Positives = 384/631 (60%), Gaps = 14/631 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y+VIV+GGG+AG EAAA  A++ A T L+TH    +G  SCNP+IGG+GK HLV+E+D
Sbjct: 20  NEYEVIVVGGGNAGIEAAAACARMKAKTLLVTHNLDNLGQQSCNPSIGGIGKSHLVKEVD 79

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL+ +  D +GIQFRVLN  KG AVR  R Q DR LY+  M+  I + ENL +I+  
Sbjct: 80  ALDGLIAKATDFSGIQFRVLNASKGAAVRATRAQIDRRLYKYQMRTRIEAIENLSLIEEA 139

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   ++ + ++    I+   VVL  GTFL G + IG+    AGR GD  S +L 
Sbjct: 140 VDALLLENGKVAGVYLRSGISIKAKAVVLCAGTFLNGKVFIGQTSYLAGRSGDPSSVNLG 199

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECG 241
            +  +      RLKTGTPARLDG+TI + K E+Q  D   +P FS+M     + Q + C 
Sbjct: 200 INLAELGLPKARLKTGTPARLDGRTIDFSKCERQLGDSEPVPVFSYMGSPEDHPQQVPCW 259

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH  I + +  S +++G I+  GPRYCPSIEDKI +F  +N H +FLEPEGLN
Sbjct: 260 ITDTNQTTHDFIRKGLDRSPLFTGVIEGIGPRYCPSIEDKIHKFASKNSHHVFLEPEGLN 319

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YPNGIST+LP ++Q  FI +I GLE V+IIRPGYAIEYDY +P  L   LE+K+  
Sbjct: 320 TYEYYPNGISTSLPYDVQVNFIHSIKGLENVHIIRPGYAIEYDYYDPTHLKDNLESKEFD 379

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEAAAQGL+AGIN+  K    +     R  +Y+GVM++DL +KGV 
Sbjct: 380 NLFLAGQVNGTTGYEEAAAQGLMAGINAVLKIRDEEPFLLRRDQAYLGVMVNDLITKGVN 439

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + E R K F +  +        LKS+
Sbjct: 440 EPYRMFTSRAEYRLSLREDNADERLTEIGYKLGVVSEERWKFFQEKRERLARETERLKSI 499

Query: 482 VLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNL--------FSICPDARKFSS 530
            +    L   S+      +  K    Y  L  P+   Q L         S+ P     S 
Sbjct: 500 WVNPGVLDKFSLEEVVGAELSKESQLYVMLKRPEVDYQKLKLLKTKDGESLLP-PPYLSD 558

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E L  +  Y+ Y  +Q  E ++   + + +IP+DFDY S   LS E+ +KL  +KP 
Sbjct: 559 EDAETLTTKVKYSGYEDKQKAEVQKNLEKIETVIPEDFDYDSAKGLSFEITQKLKKIKPR 618

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            L +A  I G+TPAA+++LL+Y+K+   K  
Sbjct: 619 TLGEALNISGVTPAAISILLVYLKRYRGKKE 649


>gi|76789235|ref|YP_328321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis A/HAR-13]
 gi|123606821|sp|Q3KLJ9|MNMG_CHLTA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|76167765|gb|AAX50773.1| GidA [Chlamydia trachomatis A/HAR-13]
          Length = 610

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    T+  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTVAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 67  LGGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       Q+ C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQVSCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRHPPFVPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 486 ------------RKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPVVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|29839891|ref|NP_828997.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila caviae GPIC]
 gi|33301152|sp|Q824M2|MNMG_CHLCV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29834238|gb|AAP04875.1| glucose inhibited division protein A [Chlamydophila caviae GPIC]
          Length = 611

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/617 (44%), Positives = 376/617 (60%), Gaps = 18/617 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESTPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGITYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +   E+Q  D   + F    +       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVAEEQPGD-PGVGFVHRDEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG+ T
Sbjct: 246 THTTQKTKDIIAANISRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K + G
Sbjct: 306 QEVYVNGLSTSMPFDVQYNMIRSVHGLENAIITRPAYAIEYDYVHGNVIYPTLESKIVEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F    Q     ++ L    
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLSQERYEIFENQKQIIEDEKARLNKT- 484

Query: 483 LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERLQIES 540
                       FK+ G +  +  + L  P+ S   L    PD  R   S +   L++E 
Sbjct: 485 ------------FKKYGNSVVSLAKALCRPEVSYDILRETFPDDVRDLGSTLNASLEMEI 532

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I G
Sbjct: 533 KYAGYIDRQKSLIHSLSKSENMVIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRISG 592

Query: 601 MTPAALNLLLIYIKKNT 617
           +  A + +L++ +KK+ 
Sbjct: 593 IACADIQVLMVAVKKHA 609


>gi|313112542|ref|ZP_07798207.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625142|gb|EFQ08432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 634

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/613 (44%), Positives = 371/613 (60%), Gaps = 4/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DA
Sbjct: 17  DYDVIVIGAGHAGIEAAHAAATLGARTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q EV
Sbjct: 77  LGGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEV 136

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L +
Sbjct: 137 VSIETENGRVKGVVTQLNGEYSAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTD 196

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGI 242
           S         R KTGTPAR+  ++I + K E Q  D    L PFSFMTD   + ++EC I
Sbjct: 197 SLKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDNELQPFSFMTDAPMHNKVECWI 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT
Sbjct: 257 AYTNPETHRIILDNIRRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + G
Sbjct: 317 EEMYLQGASSSLPEDVQNAFYRSIKGFENIEIMRPAYAIEYDCVDPTSLEATLESKVVRG 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AG+N+AR +   + +   R  SY+G ++DDL +KGV++
Sbjct: 377 LYGAGQFNGTSGYEEAAAQGLLAGLNAARNALGKEQLILPRHTSYLGTLVDDLVTKGVMD 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++          R  L+   
Sbjct: 437 PYRMMTSRSEYRLTLRQDNADQRLTPIGREYGLVQDDRWAKYQHTQSILEAERRRLRETH 496

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L + +L +   +       +   A E L  P+ S   L  +     + + ++ ERL+ E 
Sbjct: 497 LRTADLRTAMEAAGLAPAAEGGIAEELLRRPEISYPLLAGVIGWGEQITPMLAERLETEI 556

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ    +++   EK LIP DF+Y+ L  L+ E +EKL+ ++P NL QA +I G
Sbjct: 557 KYAGYIARQDRMIRDVARHEKTLIPDDFEYADLAGLTLEAREKLARIRPKNLGQAGRIPG 616

Query: 601 MTPAALNLLLIYI 613
           ++P+ +  L I +
Sbjct: 617 VSPSDVAQLSIAL 629


>gi|89898690|ref|YP_515800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila felis Fe/C-56]
 gi|123482778|sp|Q252Y3|MNMG_CHLFF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|89332062|dbj|BAE81655.1| glucose inhibited division protein NAD/FAD-dependent oxidoreductase
           [Chlamydophila felis Fe/C-56]
          Length = 611

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 380/619 (61%), Gaps = 18/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA  +AK+GAS  ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   SYDVIVVGAGHAGCEAAFCSAKMGASVLILTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEITDRSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESTPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++N+I  +  ++       TV+L++GTF+RG+IHIG      GR+GD  +  L  
Sbjct: 127 ESLLDKENVIQGVTTKEGIAYLGKTVILSSGTFMRGLIHIGDRSFSGGRLGDPAATGLSA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F    +       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGD-PGVGFVHRDEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI+ SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG+ T
Sbjct: 246 THTTEKTKEIITANIRRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q++ IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYEMIRSVRGLENAIITRPAYAIEYDYVHGNVIYPTLESKTIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLRKPDFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F    Q     +  L    
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLSKERYELFEHQKQIIEEEKLRLSKT- 484

Query: 483 LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
                       FK+ G +  +  + L  P+ S   L  + P + R F S++   L++E 
Sbjct: 485 ------------FKKYGNSVVSLAKALCRPEVSYDTLREVFPEEVRDFGSILNASLEMEI 532

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ      +   E   IP+D DY S+ +LS E +EKL+   P  +  AS+I G
Sbjct: 533 KYAGYIERQKSLIHSLSKSENMTIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRISG 592

Query: 601 MTPAALNLLLIYIKKNTVK 619
           +  A + +L++ +KK+  K
Sbjct: 593 IANADIQVLMVAVKKHAHK 611


>gi|166154713|ref|YP_001654831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 434/Bu]
 gi|166155588|ref|YP_001653843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335987|ref|ZP_07224231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis L2tet1]
 gi|205831521|sp|B0B872|MNMG_CHLT2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|205831522|sp|B0BCD7|MNMG_CHLTB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|165930701|emb|CAP04198.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis 434/Bu]
 gi|165931576|emb|CAP07152.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 610

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/614 (44%), Positives = 368/614 (59%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 67  LGGIMAEITDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       Q+ C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQVSCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRRPPFVPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K           L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 486 ------------RKYGDTVVPLTRVLCRPEVSYQQLLTEFPADVRDLGPIVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|192988505|pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988506|pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988507|pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
 gi|192988508|pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
          Length = 641

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 371/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 22  YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QAD+  Y L M+R +  + N+D++Q  V 
Sbjct: 82  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVI 141

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG-DSPSNSLFN 184
           G +      SS+ ++    I+    +L  GTFL G+IHIG    P GR   + P   L  
Sbjct: 142 GVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTE 201

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +    +Q  D   +PFSF +  + NR  + C +T
Sbjct: 202 SLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVSCYLT 261

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T 
Sbjct: 262 KTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTV 321

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYD+ +P ++  T+ET+ +  L
Sbjct: 322 EMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENL 381

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 382 FFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEP 441

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL  IG     +      R    I+       ++K+  +
Sbjct: 442 YRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAKV 501

Query: 484 TSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
           T   +++  ++   ++      A   +  P  S+Q++       R           V E+
Sbjct: 502 TPAEINTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSAAEELCNDPRVAEQ 561

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QIE  Y  Y  R+ + A  I   +   IP +F+Y SL +LS+E +EKL   +P  + QA
Sbjct: 562 VQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPATIGQA 621

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+I + +
Sbjct: 622 SRILGVSPSDVSILMIRLGR 641


>gi|62184767|ref|YP_219552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila abortus S26/3]
 gi|81170534|sp|Q5L6Z0|MNMG_CHLAB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|62147834|emb|CAH63580.1| putative division protein a [Chlamydophila abortus S26/3]
          Length = 611

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 379/617 (61%), Gaps = 18/617 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  +AK+GAS  +++    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAFCSAKMGASVLILSSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D+++Y + M+R + S   L ++QG V
Sbjct: 67  LGGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQMYHIHMKRLLESSPGLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +N+I  +  ++       TV+L++GTF+RG+IHIG L  P GR+GD  +  L  
Sbjct: 127 ESLLDNENVIQGVTTKEGITYLGKTVILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSL 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           +  +  F   RLKTGTP RL   +I +  TE+Q  D   + F   ++       Q+ C I
Sbjct: 187 ALKERGFPISRLKTGTPPRLLASSIDFSVTEEQPGD-PGVGFVHRSEPFVPPLPQVSCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  II  NI  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IF+EPEG++T
Sbjct: 246 THTTEKTKDIIAANIHRSALYGGRIEGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   ++PTLE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYVHGNVIYPTLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K  K      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLKKPAFIPSRQESYIGVMLDDLTTQILDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL+  G  LG + + R + F    Q     +  L    
Sbjct: 426 PYRMFTGRAEHRLLLRQDNACLRLSHYGRDLGLLSKERYEIFENQKQIIEEEKLRLSKT- 484

Query: 483 LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIES 540
                       FK+ G +  +  + L  P+ S   L    P D R + S +   L++E 
Sbjct: 485 ------------FKKYGNSVVSLAKALCRPEVSYDTLREAFPEDIRDYGSTLNASLEMEI 532

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ      +   E  +IP+D DY S+ +LS E +EKL+   P  +  AS+I G
Sbjct: 533 KYAGYIDRQKALIHSLSKSENMVIPEDIDYQSISSLSLEAREKLAKFTPRTIGSASRISG 592

Query: 601 MTPAALNLLLIYIKKNT 617
           +  A + +L++ +KK+ 
Sbjct: 593 IACADIQVLMVAVKKHA 609


>gi|21675089|ref|NP_663154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium tepidum TLS]
 gi|30580424|sp|Q8KA85|MNMG_CHLTE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|21648330|gb|AAM73496.1| glucose inhibited division protein A [Chlorobium tepidum TLS]
          Length = 621

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 371/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QAD+  Y L M+R +  + N+D++Q  V 
Sbjct: 62  GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG-DSPSNSLFN 184
           G +      SS+ ++    I+    +L  GTFL G+IHIG    P GR   + P   L  
Sbjct: 122 GVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +    +Q  D   +PFSF +  + NR  + C +T
Sbjct: 182 SLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVSCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T 
Sbjct: 242 KTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTV 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYD+ +P ++  T+ET+ +  L
Sbjct: 302 EMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 362 FFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL  IG     +      R    I+       ++K+  +
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKTAKV 481

Query: 484 TSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
           T   +++  ++   ++      A   +  P  S+Q++       R           V E+
Sbjct: 482 TPAEINTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSAAEELCNDPRVAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QIE  Y  Y  R+ + A  I   +   IP +F+Y SL +LS+E +EKL   +P  + QA
Sbjct: 542 VQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPATIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+I + +
Sbjct: 602 SRILGVSPSDVSILMIRLGR 621


>gi|319953029|ref|YP_004164296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Cellulophaga algicola DSM 14237]
 gi|319421689|gb|ADV48798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Cellulophaga algicola DSM 14237]
          Length = 622

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/622 (41%), Positives = 379/622 (60%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+G GHAGCEAAA AA +G+   L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKEYDVIVVGAGHAGCEAAAAAANMGSKVLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G ++D + IQF++LN  KGPA+  PRTQ DR ++    +  +    N+D  
Sbjct: 61  EIDALGGYSGIISDKSAIQFKMLNKSKGPAMWSPRTQNDRMVFAEEWRLALEDTPNVDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E N    +       I+  +VVLT GTFL G+IHIG      GR G+  + 
Sbjct: 121 QEMVSGLLVENNKAVGVTTSLGIKIKSKSVVLTNGTFLNGLIHIGDKNFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F++GR+KTGTP R+DG+++ + K   Q  D     FS+   K    Q +C
Sbjct: 181 GITEQLLSLGFESGRMKTGTPPRVDGRSLDYSKMIIQPGDAIPEKFSYSPTKALEHQRDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF ++N HQ+F+EPEG 
Sbjct: 241 HMTHTSELVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKNSHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK +
Sbjct: 301 RTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S L+ AGQINGTTGYEEAA+QGL+AGIN+ +K N+ +     R ++YIGV+IDDL +KG 
Sbjct: 361 SNLYFAGQINGTTGYEEAASQGLMAGINAHQKINEKEDFILKRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLTP+G K+G   E R KR    +++        K 
Sbjct: 421 EEPYRMFTSRAEYRTLLRQDNADLRLTPMGYKIGLAREDRLKRMEDKLEKSEKFVQFFKD 480

Query: 481 LVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVI 533
             +    ++    S       ++   ++  S P+ ++ ++ +I            +  V+
Sbjct: 481 TSVLPDQINPIFESVNSAVVDQSFKMFKAFSRPNVTMDHMMTIASVSNFVKENDLNREVL 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +++  Y+ Y  ++   A ++   E   IP +FDY+ L +LS E ++KL+ ++P  + 
Sbjct: 541 EQAEVQVKYSGYIAKEKNNADKLHRLENVKIPANFDYTKLKSLSTEARQKLTKIQPVTIS 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++LL+++ +
Sbjct: 601 QASRISGVSPSDISVLLVFLGR 622


>gi|258405986|ref|YP_003198728.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfohalobium retbaense DSM 5692]
 gi|257798213|gb|ACV69150.1| glucose inhibited division protein A [Desulfohalobium retbaense DSM
           5692]
          Length = 626

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/618 (44%), Positives = 378/618 (61%), Gaps = 3/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DVIV+GGGHAGCEAA  AA++G ST L+T     +G +SCNPAIGGL KGH+V+EID
Sbjct: 8   ETFDVIVVGGGHAGCEAAMAAARMGLSTLLLTINIDRLGHLSCNPAIGGLAKGHMVKEID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MG  AD AGIQFR+LN +KGPAVR  R Q DR  Y   +QR++ +Q+NL + +  
Sbjct: 68  ALGGRMGLWADQAGIQFRILNTRKGPAVRATRAQMDRATYMRVVQRDLFAQDNLWIKEAT 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   I  +      + R + V+LTTGTFL G IHIG      GR+GD  +N+L 
Sbjct: 128 AQEILAENGSIKGVRTHLEEIHRSANVILTTGTFLTGRIHIGLNNFAGGRLGDPAANALS 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S      D  RLKTGT  RL   ++ + +   Q  D+   PFSF +  +   Q+ C IT
Sbjct: 188 ESMRGLGLDLARLKTGTVPRLLRDSVDFAQMTPQPGDDPPPPFSFHSPGVQLPQLPCHIT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH  I E    S ++ G I   G RYCPSIEDK+ RF +++ HQ+F+EPEGL+  
Sbjct: 248 YTNAATHDSIREGFDRSPMFQGVITGTGARYCPSIEDKVARFPDKDRHQLFVEPEGLDNP 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGI T+LP +IQ + + TIPGLE+  I+RPGYAIEYD++ P +L P+LETK ++GL
Sbjct: 308 EVYPNGIPTSLPLDIQKKLLATIPGLEQAQIVRPGYAIEYDFVPPTQLKPSLETKAVAGL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL A IN  R+  +       R  +Y+GV++DDL +KG  EP
Sbjct: 368 FCAGQINGTSGYEEAAAQGLWAAINVLRRHQERAPWILGRDQAYMGVLVDDLVTKGTQEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLTP+G +LG + +   + +   +Q  + L S L+  ++
Sbjct: 428 YRMFTSRAEHRLLLREDNADQRLTPLGRELGLVDDSHWEIYQSKMQALDSLLSRLEETII 487

Query: 484 TSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                      SI     GK  +    L  P   I++L  + P  R     V+++ +++S
Sbjct: 488 KPDATVREKLHSIGAAVPGKPASLGTLLRQPQLHIRDLEVVAPGLRDLPGHVLDQAEVQS 547

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ    +  + +E   +P+D  Y ++P LS E+ EKL  ++P  L QA +I G
Sbjct: 548 KYQGYLARQQEMVQRSQRQENIALPEDMAYETIPGLSREVVEKLQTIRPRTLGQAGRISG 607

Query: 601 MTPAALNLLLIYIKKNTV 618
           +TPAAL+ L I +KK   
Sbjct: 608 ITPAALSCLEIALKKQGR 625


>gi|224541705|ref|ZP_03682244.1| hypothetical protein CATMIT_00877 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525374|gb|EEF94479.1| hypothetical protein CATMIT_00877 [Catenibacterium mitsuokai DSM
           15897]
          Length = 619

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/616 (39%), Positives = 360/616 (58%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAG EA    A+ G  T LIT   S  GSM CN +IGG  KG +VREIDAL
Sbjct: 2   YDIIVVGAGHAGIEACLAGARTGNKTLLITSNFSNAGSMPCNTSIGGPAKGIIVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA  +Q ++LN  KGP V+  R QAD++ Y   MQ+ +  QENLD+++  V 
Sbjct: 62  GGQMGKTTDATYLQMKMLNTAKGPGVQSLRAQADKKAYPRYMQKVLKEQENLDIVEAMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +    +++ D +     T +LTTGT+L+  + +G  K P+G      S  L + 
Sbjct: 122 DLIVEGDECKGVILADGTRYESHTTILTTGTYLKAEVLVGHSKTPSGPDKQKESLYLSSK 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
              + F   RLKTGTP R++  +I + KT  Q   +  + FS+ T   T    Q  C +T
Sbjct: 182 LKDYGFRIQRLKTGTPPRVEINSIDYSKTTVQPGTDAKLSFSYETTHFTPVEDQTVCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH++I +N+   A++SG IK  GPRYCPSIEDK+V+F ++  HQIFLEPE    +
Sbjct: 242 YTTAQTHKLIRDNLDKCAMFSGLIKGIGPRYCPSIEDKVVKFADKERHQIFLEPESKEMN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G ST++P +IQ + + ++PGLE   I++  YAIEYD I+P +L+P+LETK +  L
Sbjct: 302 TIYVQGFSTSMPHDIQEKMVHSLPGLENCTILKYAYAIEYDAIDPLQLWPSLETKVLKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+++K      +   R ++YIGV+IDDL +KG  EP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLIAGINASKKVKGNKPLILKRDEAYIGVLIDDLVTKGTKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DNAD RL   G   G + +     +   +   +     L ++  
Sbjct: 422 YRMLTSRAEYRLLLRHDNADERLRKYGHDAGLVNDEVYSLYLDKMNRIHAEIERLDTIHF 481

Query: 484 TSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + K+  +  +  K   + +   TA   L  P+   ++L          +   + R+ I  
Sbjct: 482 SPKSEINDLLEEKGSTRLKEGVTARAILQRPELVYEDLLPYIEHV-DLTEEEMRRVTILI 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  + + + +++K  E++ IP D DY  +  LS E ++KL  ++P  + QA++I G
Sbjct: 541 KYKGYIEKTLRQVEKVKNMEEKQIPADLDYDDVLNLSLEARQKLKKVRPVTIGQATRISG 600

Query: 601 MTPAALNLLLIYIKKN 616
           + PA +++LLI++K  
Sbjct: 601 INPADISVLLIHLKTQ 616


>gi|148243498|ref|YP_001228655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. RCC307]
 gi|166224334|sp|A5GWP3|MNMG_SYNR3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|147851808|emb|CAK29302.1| Glucose inhibited division protein A [Synechococcus sp. RCC307]
          Length = 643

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/634 (41%), Positives = 375/634 (59%), Gaps = 10/634 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+++IV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFELIVVGGGHAGCEAALTAARLGISTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNT------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
            V G  T          I+ +     S+     VVLTTGTFL G I +G   +PAGR G+
Sbjct: 128 MVTGLETSGSAESGDLRITGVRTYFGSIYNAQAVVLTTGTFLGGRIWVGNQSMPAGRAGE 187

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN 235
            P+  L  +     F T RLKTGTPAR+D +++  +  E+Q +D     FSF  +  +++
Sbjct: 188 QPAEGLTEALQALGFATDRLKTGTPARVDRRSVALETLEEQPSDAHERWFSFDPEAWVSS 247

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
             + C ITRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF +++ HQIFL
Sbjct: 248 EPMSCHITRTTAATHQLIKDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFADKDSHQIFL 307

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG +T  +Y  G ST LPE +Q + +RT+PGLE+  ++RP Y +EYDY+   +L P+L
Sbjct: 308 EPEGRDTPELYIQGFSTGLPERLQLKLLRTLPGLEQCVMLRPAYNVEYDYLPATQLLPSL 367

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           +TK+++GLF AGQ+NGTTGYEEAAAQGLVAG+N+ R       + F R  SYIG +IDDL
Sbjct: 368 QTKRVAGLFSAGQLNGTTGYEEAAAQGLVAGLNAVRLIRGQTPVHFPREGSYIGTLIDDL 427

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +K + EPYR+ TSR+EYR+ LR DNAD RLTP+  +LG I  RR + + +  +      
Sbjct: 428 VTKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLARELGLIDARRWQIYERKQEGIAAET 487

Query: 476 SLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L+++ L        +    +      + T  + L  P F   +L        +    V
Sbjct: 488 KRLETVRLKVSDPVAPAVVEQTGAAIKGSITLADLLRRPGFHSNDLVRHGLADGELPVDV 547

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y+ Y  RQ  + + ++ + +RLIP   D+ S+  LS E +E+L+  +P NL
Sbjct: 548 REGAEIDVKYSGYLARQTQQIERVQRQGQRLIPSGIDFYSITTLSREARERLTAAQPLNL 607

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLNEIVLV 626
            QAS++ G++PA +  LL++++    +     L 
Sbjct: 608 GQASRLPGVSPADVTALLLWLELQDRQAATTTLA 641


>gi|67458511|ref|YP_246135.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia felis URRWXCal2]
 gi|75537022|sp|Q4UN88|MNMG_RICFE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|67004044|gb|AAY60970.1| Glucose-inhibited division protein A [Rickettsia felis URRWXCal2]
          Length = 622

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/611 (52%), Positives = 432/611 (70%), Gaps = 1/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A+LGAST LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYDVIVIGGGHAGVEAAAASARLGASTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D  GI +++LN  +GPAV GPR QADR+LY+ AM + + +  NLD++ G+V
Sbjct: 63  LDGLMGYVIDQGGIHYKMLNETRGPAVWGPRAQADRKLYKKAMCQILTNYPNLDILYGKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + + ++++ ++S I C  ++LTTGTFL G+IHIG+ KIPAGR+ + PS  L N
Sbjct: 123 EDIEIKSSKVEAVILNNDSKILCQKIILTTGTFLSGLIHIGQKKIPAGRVDEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  K  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +T  +   QI C IT+
Sbjct: 183 TLKKVGFKIARLKTGTPPRIDGRTIDYSKTALQPGDKTPRPFSELTSVVNVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIVRF  ++ H+IFLEPEGL+   
Sbjct: 243 TTSETHDIIRENLNKSAMYSGQIEGIGPRYCPSIEDKIVRFSTKSEHRIFLEPEGLDDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPE++QH+ I+TIPGLE V ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEDVQHKLIKTIPGLENVKVLRPGYAIEYDYVDPREISVTLETKKIAGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R +SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALAVKDQAPFMLTRANSYIGVMIDDLTTFGTIEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +G+ +G + E+R+K F K  ++    + LL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGINIGVVSEKRKKIFTKKCEDIEKTKLLLNTLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYA 543
           +  L+   I   QDG  +T  +    P F+++    I P  ++  ++ +++ L IE+ YA
Sbjct: 483 TSKLAKMGIQVAQDGTYKTVLDLFKIPSFNVEQAIKIFPMLKEMQNNNILQLLYIEAKYA 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TP
Sbjct: 543 SYLTRQHADINLFQSEEAQLIPKNIDYFKIPSISLEIQEKLSSHKPTTIGVARRISGITP 602

Query: 604 AALNLLLIYIK 614
           AA+  ++IY+K
Sbjct: 603 AAITAIIIYLK 613


>gi|305665798|ref|YP_003862085.1| glucose-inhibited division protein A [Maribacter sp. HTCC2170]
 gi|88710564|gb|EAR02796.1| glucose-inhibited division protein A [Maribacter sp. HTCC2170]
          Length = 622

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/622 (41%), Positives = 379/622 (60%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +G+ T L T    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MFGEEYDVIVVGGGHAGAEAAAAAANMGSKTLLATMNLQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQF++LN  KGPA+  PRTQ DR  +    +  + +  N+D  
Sbjct: 61  EIDALGGYSGIITDKSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALENTPNVDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  ++G   + N +  +       ++  +VVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 121 QEMISGLLLDGNKVVGVRTSLGIDVKGKSVVLTNGTFLNGLIHIGEKQFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +        FD+GR+KTGTP R+DG+++ + K   Q  D     FS++   +  +Q +C
Sbjct: 181 GITEQLTDLGFDSGRMKTGTPPRVDGRSLDFSKMILQPGDTIPEKFSYLDTPVLTKQRDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+   H ++ E  + S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 241 HMTHTSKLVHDLLKEGFERSPMFNGRIKSLGPRYCPSIEDKINRFADKDSHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 DTVEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA+QGL+AGIN+  K N+ +     R ++YIGV+IDDL +KG 
Sbjct: 361 DNLYFAGQINGTTGYEEAASQGLMAGINAHLKLNEKEPFILKRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLTP   ++G   + R KR  +  ++ +      KS
Sbjct: 421 EEPYRMFTSRAEYRTLLRQDNADLRLTPKSHEIGLATDDRLKRMDEKKRKSDAFVQFFKS 480

Query: 481 LVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVI 533
             +  + ++    S       ++   ++  S P  ++ ++  +               V+
Sbjct: 481 TSVGPEAINPILESVDSSLVKQSDKMFKVFSRPKVTMNHMLQLDSVSEFVSDNDLDREVM 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +I+  Y+ Y  ++   A ++   E   IP +FDYS L +LS E +EKL  ++P  + 
Sbjct: 541 EQAEIQVKYSGYIQKEKNNADKLHRLENVKIPDNFDYSKLKSLSYEAREKLETIRPVTIS 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++LL+++ +
Sbjct: 601 QASRISGVSPSDISVLLVFMGR 622


>gi|291457895|ref|ZP_06597285.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419439|gb|EFE93158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 642

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/630 (40%), Positives = 369/630 (58%), Gaps = 13/630 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   SYDV V+G GHAG EAA   A+LG  T +       I  M CNP IGG  KGHLVR
Sbjct: 14  MTELSYDVAVVGAGHAGVEAALACARLGLKTIMFCLSADHIAMMPCNPNIGGSSKGHLVR 73

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MG+  D   +Q R+LN  KGPAV   R QAD++ Y   M+R + +QENL + 
Sbjct: 74  ELDALGGEMGKNIDKTFLQSRMLNRSKGPAVHSLRAQADKQEYMKEMRRTVENQENLTIR 133

Query: 121 QGEVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           Q E+     ++      I  +     +      VVL TG +L      G++    G  G 
Sbjct: 134 QAEITELLLKESEGEREIFGVRDAAGTDFFARAVVLCTGVYLNSRCIYGEVSEDTGPNGL 193

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--IT 234
             +  L     +      R KTGTPAR+DG+TI + K E Q  D  +IPFSF TD   + 
Sbjct: 194 RNAGHLSGFLRRAGVRMLRFKTGTPARIDGRTIDFSKMEIQKGDRPVIPFSFSTDPDTVQ 253

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             QI+C +T TN +TH II +NI+ S +Y+G+I+  GPRYCPSIEDK++RF E+  HQIF
Sbjct: 254 KEQIDCYLTYTNEKTHEIIRKNIERSPMYNGEIEGTGPRYCPSIEDKVMRFPEKERHQIF 313

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +EPEGL T+ +Y +G+S++LPE++Q    R++ GLE+  I+R  YAIEYD I+ ++L  +
Sbjct: 314 IEPEGLYTNEMYLSGMSSSLPEDVQIDMYRSMEGLERAEIVRNAYAIEYDCIDSQQLKSS 373

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LE + I GLF  GQ NG++GYEEAA QG +AG+N+A +      +   R+++YIGV+IDD
Sbjct: 374 LEFQTIRGLFSGGQFNGSSGYEEAAVQGFMAGVNAAMRCLGKKAVVLDRSEAYIGVLIDD 433

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +K   EPYRM TSRAEYR+ LR DNAD RL  IG ++G I     ++  +        
Sbjct: 434 LVTKENREPYRMMTSRAEYRLLLRQDNADLRLREIGYRIGLISAEELRKTQEKKLAIERE 493

Query: 475 RSLLKSLVL-----TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
              ++   +     T++ L     +  + G   +  E    P+ + ++L  + PD  + S
Sbjct: 494 TERMEKSFVGGGEETNRILRKLGTAEIKSGV--SLAELCRRPELNYESLRPLDPDRPELS 551

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           + V E ++IE  Y  Y  RQ+ +    K  E++ IP+D DY+ +  L  E ++KL +++P
Sbjct: 552 AEVREEVEIEIRYKGYIARQLQQVSHFKSMEEKRIPEDIDYAEVGNLRLEARQKLKLIRP 611

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            N+  AS+I G++PA +++LL+Y++K   K
Sbjct: 612 DNVGMASRISGVSPADISVLLVYLEKRRRK 641


>gi|300774539|ref|ZP_07084402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506354|gb|EFK37489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chryseobacterium gleum ATCC 35910]
          Length = 620

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/620 (45%), Positives = 385/620 (62%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI+  YDVIV+G GHAGCEAAA AA LG+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MISEIYDVIVVGAGHAGCEAAAAAANLGSKTLLITMNMQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G VAD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIVADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRLALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N ++ +V      I+  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKQLIIENNKVTGVVTSLGIEIKGRSVVLTNGTFLNGLIHVGDKQLGGGRMGEPRAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F+ GR+KTGTP R+DG+++ + K E+Q  D+    FS++      +Q+ C
Sbjct: 181 GITEQLVTLGFEAGRMKTGTPPRVDGRSLDYSKMEEQKGDQNPQKFSYLDTPKLTKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN   H I+ E    S +++G I+S GPRYCPSIEDKI RF ERN HQ+F+EPEG 
Sbjct: 241 HIVYTNETVHDILREGFDRSPMFNGTIQSLGPRYCPSIEDKINRFAERNRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE++Q + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 KTVEIYVNGFSSSLPEDVQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLKHTLETKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K ++ D    +R ++YIGV+IDDL +KG 
Sbjct: 361 DNLYFAGQINGTTGYEEAAGQGLIAGINAHNKVHEKDEFILNRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT     LG   E R +R    + E   L   L+ 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADIRLTEKAFNLGLAKEDRLRRVETKVSESQSLEEFLRE 480

Query: 481 LVLTS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC---PDARKFSSLVIER 535
             L     N    SI      +   A + L+ P+ +++ L  I      + ++S  V E+
Sbjct: 481 TSLKPGIINPVLESIESSPVDQAYRAAQILTRPNMTLEKLDEIDFIKEVSEQYSDEVREQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFDYS L +LS E K+K+S ++P  + QA
Sbjct: 541 AEINIKYKGYIEKEKENVAKLNRLENIKIPEDFDYSKLSSLSAEAKQKMSNVRPKTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
            +I G++PA +N+LL+Y+ +
Sbjct: 601 GRISGVSPADINVLLVYLGR 620


>gi|295103709|emb|CBL01253.1| glucose-inhibited division protein A [Faecalibacterium prausnitzii
           SL3/3]
          Length = 624

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/619 (43%), Positives = 373/619 (60%), Gaps = 6/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DA
Sbjct: 6   DYDVIVIGAGHAGIEAAHAAAVLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  +     L + Q EV
Sbjct: 66  LGGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRRRYNEYMKHALEQTPGLAIHQAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +V Q +       VVL TGT L G I +G     +G  G   +N+L +
Sbjct: 126 VALEVENGHVKGVVTQLHGEYTAKCVVLATGTNLGGKIFVGDAWYASGPDGMHAANALTD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER--LIPFSFMTDKITNRQIECGI 242
           S         R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I
Sbjct: 186 SLKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPMHNKVECWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETH+II++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H +F+EP G NT
Sbjct: 246 AYTNPETHKIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFSGKDRHPLFVEPCGENT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G S++LPE++Q+ F  +I G E + I+RP YAIEYD ++P  L  TLE+K + G
Sbjct: 306 EEMYLQGASSSLPEDVQNAFYHSIKGFEHLEIMRPAYAIEYDCVDPTSLEATLESKVVRG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AG+N+AR +  L+ +   R  SY+G ++DDL +KGV++
Sbjct: 366 LYGAGQFNGTSGYEEAAAQGLLAGLNAARNALGLEQLVLPRHTSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++    Q     R  L    
Sbjct: 426 PYRMMTSRSEYRLTLRQDNADQRLTPIGREYGLVQDDRWAKYQHTQQILEAERRRLHETH 485

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L + +L +   +       +   A E L  P+ S   +  I     + + ++ ERL+ E 
Sbjct: 486 LRTADLRAAMEAAGLAPAAEGGIAEELLRRPEISYPLVAGIIGWGEEITPMLAERLETEI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ    +E+   EK LIP+DF+Y++L  L+ E +EKL+ ++P NL QA +I G
Sbjct: 546 KYAGYIARQDRMIREVARHEKTLIPEDFEYAALTGLTLEAREKLARIRPRNLGQAGRIPG 605

Query: 601 MTPAALNLLLIYI--KKNT 617
           ++P+ +  L I +  K+  
Sbjct: 606 VSPSDVAQLSIALAGKQQK 624


>gi|212702493|ref|ZP_03310621.1| hypothetical protein DESPIG_00510 [Desulfovibrio piger ATCC 29098]
 gi|212674154|gb|EEB34637.1| hypothetical protein DESPIG_00510 [Desulfovibrio piger ATCC 29098]
          Length = 643

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 365/626 (58%), Gaps = 13/626 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +D IV GGGHAG EAA   A+LG S  LI+     +G +SCNPAIGGL KGH+VREI
Sbjct: 7   ENRFDCIVTGGGHAGSEAAVALARLGLSVLLISGNVDRLGYLSCNPAIGGLAKGHMVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+MG  ADA GIQFR LN+ KGPAVR  R Q DRE Y+  +++ + S   L + Q 
Sbjct: 67  DALGGMMGLWADAGGIQFRTLNMSKGPAVRATRAQIDREAYQKVLKKTLFSTPGLRIWQD 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E    S +            V+LTTGTFL G+IHIG   +P GR+GD+P+  L
Sbjct: 127 SVTEVLEENGHASGVRTAQGLTFHARHVLLTTGTFLAGLIHIGLTHLPGGRLGDAPATGL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +S  +     GRLKTGT  RL   +I + K E+Q  D     FSF        Q+ C I
Sbjct: 187 SDSLRRLGLTLGRLKTGTTPRLLRASIDFSKLEEQPGDTPPPRFSFRGPGPVLPQVPCHI 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN   H  I      S +++G I+  G RYCPSIEDK+ RF ER  HQIFLEPEGL++
Sbjct: 247 TWTNEAAHAAIRSGFDRSPLFTGVIQGTGARYCPSIEDKVARFPERERHQIFLEPEGLDS 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NGIST+LP ++Q   I  IPGLE   ++RPGYAIEYDY NP +L  TLETK + G
Sbjct: 307 PEVYANGISTSLPLDVQQAMIHAIPGLEHAVMVRPGYAIEYDYANPVQLHGTLETKALPG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL A +N A +  +LD     R  SY+ V++DDL + G  E
Sbjct: 367 LWLAGQINGTSGYEEAAAQGLWAALNIACREKELDPFVPGRDSSYMAVLVDDLVTSGTEE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNAD RLTP+G ++G +GE + + F   ++  + +R LL+ + 
Sbjct: 427 PYRMFTSRAEHRLLLREDNADVRLTPLGRRIGLVGEEQWRLFNDKMEHGHAVRRLLQQVR 486

Query: 483 LTSKN---------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNL----FSICPDARKFS 529
           +   +          +      +   + RT  E L  PD  ++ L      +        
Sbjct: 487 VQLTDGDDATQTAPATPEETELRAALRGRTLEEALRRPDMDLERLARISAPLAEALADRD 546

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
              +E +Q++  YA Y  RQ          E   +P D DY  +  LS E++EKL  ++P
Sbjct: 547 LRDLETVQVDVKYAGYLERQRELIARAARLESVELPADLDYRQVAGLSREVEEKLDRVRP 606

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
            NL QA +I G+TPAA+  L I++ K
Sbjct: 607 RNLGQAGRISGVTPAAVGCLEIHLHK 632


>gi|78185764|ref|YP_378198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9902]
 gi|123580595|sp|Q3AUG9|MNMG_SYNS9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78170058|gb|ABB27155.1| Glucose-inhibited division protein A subfamily [Synechococcus sp.
           CC9902]
          Length = 641

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/625 (43%), Positives = 376/625 (60%), Gaps = 8/625 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA   A+LG +TAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITTARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R LN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRTLNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V G   E       I  +     S+     VVLT GTFL G I +G   + AGR G+  
Sbjct: 128 MVTGLEVEGEEEQQRIQGVRTYFGSVYAAQAVVLTAGTFLGGRIWVGHQSMAAGRAGEQA 187

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q
Sbjct: 188 AEGLTETLQGLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQ 247

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++  HQIFLEP
Sbjct: 248 MSCHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKESHQIFLEP 307

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 308 EGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLET 367

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++SGLF AGQ+NGTTGYEEAAAQGLVAG+N+AR   + D + F R  SYIG MIDDL S
Sbjct: 368 KRVSGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGEQDPVYFPREGSYIGTMIDDLVS 427

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           + + EPYR+ TSR+EYR+ LR DNAD RLTP+G  LG I +RR + F + +Q  +  +  
Sbjct: 428 QDLREPYRVLTSRSEYRLILRGDNADRRLTPLGRDLGLIDDRRWQLFEEKLQAMDAEKKR 487

Query: 478 LKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+S  L        +    +      + T  + L  P     +L             V E
Sbjct: 488 LESTRLKVSDPIAPTVEEETGAPIKGSITLADLLRRPAMHAADLVRHGLADGDLPLPVRE 547

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+++  LSNE +EKLS ++P  L Q
Sbjct: 548 GAEIDIKYSGYLQRQQQQIDQVKRQSQRKLPSDLNYTNIGTLSNEAREKLSAIQPTTLGQ 607

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           A++I G++ A +  LL++++    +
Sbjct: 608 ANRIPGVSQADITALLMWLELQKRQ 632


>gi|255348875|ref|ZP_05380882.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 70]
 gi|255503415|ref|ZP_05381805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis 70s]
 gi|255507093|ref|ZP_05382732.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis D(s)2923]
 gi|289525543|emb|CBJ15021.1| tRNA uridine 5-carboxymethylase [Chlamydia trachomatis Sweden2]
 gi|296435103|gb|ADH17281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis E/150]
 gi|296438823|gb|ADH20976.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia trachomatis E/11023]
          Length = 610

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   DYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  + D +GIQFR+LN  KGPAVR PR Q D++LY + M+R +     L ++QG  
Sbjct: 67  LGGIMAEITDLSGIQFRILNQIKGPAVRAPRAQVDKQLYHIHMKRLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDNGEKVLGVSTKEGWAYLGKTVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D  +  F    +       QI C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLASSIDFSVMEEQPGDHNVC-FVHRNEMFVPTLPQISCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I +N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 THTTDQTKDLITKNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDY++   +FP+LE+K I G
Sbjct: 306 QEVYVNGLSTSMPFDVQYDIIRSVSGLENAIITRPAYAIEYDYVHGNVIFPSLESKLIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K  +      SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLRRPPFVPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F +        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHSLGLLSSERYAMFQEQKACIEQEKERLSKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D R    +V   L++E  
Sbjct: 486 ------------RKYGDTVVPLTKVLCRPEVSYQQLLTEFPADVRDLGPIVGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E   IP+D DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMERSENISIPEDIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|145347894|ref|XP_001418395.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578624|gb|ABO96688.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 693

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/634 (41%), Positives = 371/634 (58%), Gaps = 14/634 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAGCEAA  +A+ GAST L+T     +    CNPA+GG  K  LV EI
Sbjct: 56  DARYDVIVVGAGHAGCEAALASARAGASTLLLTLNLDRVAWQPCNPAVGGPAKSQLVHEI 115

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG ++D   +Q RVLN  +GPAV   R Q D+  Y   M+  + ++ NL + +G
Sbjct: 116 DALGGAMGIISDKTYLQKRVLNASRGPAVWALRAQTDKWEYSREMRTTLEAEPNLSIREG 175

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V        + +  +           +VVLTTGTF+ G I +G+  + AGR G++PS  
Sbjct: 176 MVTELVLGTNDDVRGVRTHFGMEFEAPSVVLTTGTFMGGQIWVGRKTLAAGRAGEAPSEG 235

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L     +  F+  RLKTGTPAR+D ++I +   E+Q  DE +  FSF  D  +   Q+ C
Sbjct: 236 LTEYLQEIGFEIDRLKTGTPARVDSRSIDYTNLEEQPGDEDMRWFSFDEDAHVVREQMAC 295

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT   TH++I +N+  +  Y G + + GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 296 HMTRTTAATHKLIQDNLLETPTYGGWVGAKGPRYCPSIEDKIVRFADKESHQIFLEPEGR 355

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VY  G ST LPE +Q + +RT+PGLE   I+RP YA+EYD++   +  PTLETKKI
Sbjct: 356 TVPEVYVQGFSTGLPETLQLELLRTLPGLENCKILRPAYAVEYDFLPAYQCKPTLETKKI 415

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSAR-----KSNKLDCICFSRTDSYIGVMIDDL 415
           SGLF +GQINGTTGYEEAAAQGL+AGIN+A+      SN    +   R  SY+G ++DDL
Sbjct: 416 SGLFFSGQINGTTGYEEAAAQGLLAGINAAQLAKGGASNGAKELILPREGSYLGTLVDDL 475

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +K + EPYRM TSR+EYR+ LR DNAD RLTP+G ++G I + R  +F K     +   
Sbjct: 476 CTKDLREPYRMLTSRSEYRLVLRSDNADMRLTPLGREVGLISDARWAKFEKKRDAVDNEM 535

Query: 476 SLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--ARKFSS 530
           + L+S  L  K+     +  +S     ++ T  E L  P      L            + 
Sbjct: 536 ARLQSTRLNVKDEFCQRALDVSGSGSRQSYTLEELLRRPQVPYSMLEEFGQGNVDAPLTR 595

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E ++I   Y+ +  RQ ++ +    +  + IP D DY+S+  L  E +EKL+ ++P 
Sbjct: 596 WEAEAVEIRVKYSGFIKRQELQVERESSKFGKPIPDDVDYASISTLRMEAREKLARVRPA 655

Query: 591 NLLQASKIEGMTPAALNLLLIYI--KKNTVKLNE 622
            + QAS+I G+TPA ++ LL+++  ++   +  E
Sbjct: 656 TIGQASRIGGVTPADVSSLLVHLEVRRRNAERAE 689


>gi|262039034|ref|ZP_06012368.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
 gi|261746944|gb|EEY34449.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
          Length = 628

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/623 (42%), Positives = 384/623 (61%), Gaps = 12/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIVIG GHAG EA+  +A+LG  TA+ T     IG MSCNP++GG  K HLV+E+D
Sbjct: 2   REYDVIVIGAGHAGIEASLASARLGMKTAVFTITLDNIGVMSCNPSVGGPAKSHLVKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D + +Q R+LN KKGPAVR  R Q+DR++Y   M++ + +QENLD+IQ  
Sbjct: 62  ALGGEMGRNMDKSFVQMRILNTKKGPAVRSLRAQSDRKIYAKEMKKTLENQENLDIIQDI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V  F  E   I  I  +     +   V+  TGTFLRG+++IG+ +I  GRMG+  S  L 
Sbjct: 122 VTEFTVENGEIKGIKTKTGLEFKAKAVITATGTFLRGLMYIGEKRIKGGRMGELSSEELT 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER-LIPFSFMT---DKITNRQIE 239
           +S     F   R KTGTP R+D +T+   K E+Q  ++   + FS  T   + +   Q+ 
Sbjct: 182 DSLKSLGFKMDRFKTGTPPRIDIRTLDVSKLEEQPGEKGVPLKFSMRTPDEEVLEKPQLS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRTNL+ H+II++N+  + +Y+G I S GPRYCPSIEDK+V+F E++ H +FLEPEG
Sbjct: 242 CYLTRTNLKAHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVKFHEKDSHHLFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  VY +G+ST+ P E Q + + TI GLE  +I+R GYA+EYD ++P EL  TLETK+
Sbjct: 302 FDTAEVYISGLSTSYPAEYQQKIVNTIEGLENAHIMRYGYAVEYDIVDPGELDYTLETKR 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQINGT+GYEEAAAQG++AGIN+A K    +     R  SYIG MIDDL +K 
Sbjct: 362 VKGLYLAGQINGTSGYEEAAAQGIIAGINAALKIKGEEPFILDRESSYIGTMIDDLINKE 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           ++EPYRMFT+R+E+R+ LR DNAD RL+    K+G + ++   +  +  +  +     L+
Sbjct: 422 LIEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLLDKKYYDKIEEKKKNVSETIEKLE 481

Query: 480 SLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-----FSSL 531
           ++ L + N     I  K         T  E L  P  + Q++  I           F   
Sbjct: 482 NIKLGTSNGRLVEILDKYYESLKSGTTLKEILRRPKVTYQDIKYIAEIIENVSNLSFDEE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
              +++++  Y  Y  +        K  + + IPK+FDY  +  ++ E K++L   +P+N
Sbjct: 542 TEYQIEVQVKYEGYIAKAKQIMDRQKKLDDKKIPKNFDYGVMKGITREAKQRLEEKRPYN 601

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           + QAS+I G+TPA +++LL+Y++
Sbjct: 602 VGQASRISGVTPADISVLLMYLE 624


>gi|313206592|ref|YP_004045769.1| glucose inhibited division protein a [Riemerella anatipestifer DSM
           15868]
 gi|312445908|gb|ADQ82263.1| glucose inhibited division protein A [Riemerella anatipestifer DSM
           15868]
 gi|315022087|gb|EFT35116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Riemerella anatipestifer RA-YM]
 gi|325335966|gb|ADZ12240.1| GidA [Riemerella anatipestifer RA-GD]
          Length = 620

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/620 (45%), Positives = 387/620 (62%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN  YDVIV+G GHAGCEAAA AA LG+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MINEVYDVIVVGAGHAGCEAAAAAANLGSKTLLITMNMETIGKMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G VAD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIVADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRLALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N ++ ++      I+  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKQLIIEGNKVAGVITSLGIEIKGKSVVLTNGTFLNGLIHVGDKQLGGGRMGEPKAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F  GR+KTGTP R+DG+T+ + K E+Q  DE    FS++      +Q  C
Sbjct: 181 GITEQLVDLGFTAGRMKTGTPPRVDGRTLDYSKMEEQPGDENPQKFSYLDTPRLTKQRSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN   H I+      S +++G I+S GPRYCPSIEDKI RF ERN HQ+F+EPEG 
Sbjct: 241 HITYTNEIVHDILRSGFDRSPMFNGTIQSLGPRYCPSIEDKINRFAERNRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE+IQ + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 KTIEIYVNGFSSSLPEDIQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLNHTLETKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K ++ +    +R ++YIGV+IDDL +KG 
Sbjct: 361 ENLYFAGQINGTTGYEEAAGQGLIAGINAHNKVHEKEAFILNRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT    KLG   E R ++    I++   L   LK 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADIRLTEKSYKLGLAKEERLQKVEDKIKKSEELEDFLKD 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---ARKFSSLVIER 535
             L  K ++    SI      +   A + L+ P+  ++ L  I      +R +S  V E+
Sbjct: 481 YSLKPKQINPILESIESSPVDQAYRASQILTRPNMKLELLEEIEEIKNTSRNYSDEVREQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFD++ + +LS E K+KL+ +KP  + QA
Sbjct: 541 AEINIKYRGYIEKEKENVAKLHRLENIKIPEDFDFTKINSLSAEAKQKLNSIKPKTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++PA +N+LLI++ +
Sbjct: 601 SRISGVSPADINVLLIFLGR 620


>gi|72383112|ref|YP_292467.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. NATL2A]
 gi|123620660|sp|Q46IB4|MNMG_PROMT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72002962|gb|AAZ58764.1| Glucose-inhibited division protein A subfamily [Prochlorococcus
           marinus str. NATL2A]
          Length = 656

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/638 (44%), Positives = 382/638 (59%), Gaps = 20/638 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVVGGGHAGCEAALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   +Q RVLN  +GPAVR  R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGIIGKLADLTALQKRVLNASRGPAVRALRAQTDKRSYAHEMLKILQNTPNLKIREA 127

Query: 123 EVAGFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   E                   I  I     S+     VVLTTGTFL G I IG 
Sbjct: 128 MVTGLEVEHYPNQIDQKTPEIQERIGFIKGIKTYFGSVFHAKAVVLTTGTFLGGRIWIGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  S  L     K  F T RLKTGTPAR+D +TI  D  ++Q +D     F
Sbjct: 188 QSMSAGRAGEQASEGLTEELKKLGFTTDRLKTGTPARVDRRTIDLDSLDEQLSDASDKFF 247

Query: 227 SFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF      +  Q+ C ITRT  +TH++I  N+  + IY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPLSWKSGEQMSCHITRTTKQTHQLIKNNLHLTPIYGGFIDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGL+   ++RP YA+EYDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEMYVQGFSTGLPENLQLELLRTLPGLQNCVMLRPAYAVEYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           I   +L  TLETK+ISGL+ AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  + I F R  
Sbjct: 368 IPATQLEATLETKRISGLYSAGQLNGTTGYEEAAAQGLVAGLNAARLVNNKEGIIFERES 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I ERR K F 
Sbjct: 428 SYIGTMIDDLVTKDLKEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDERRWKIFN 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
              Q  N  +  L+   +   + S+  I   +      + T   FL   +   ++L +  
Sbjct: 488 AKQQLINQEKERLEKERIKESDKSAKEIYSSTGTPIKGSLTLANFLRRTNIHYKDLITFN 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              +     V E ++I+  Y+ Y  RQ  +  ++K + K+L+PK+ +Y+++  LS E +E
Sbjct: 548 LTTQSIPLDVEEGVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           KL+I +P +L  A+++ G++ A L  LL+++K   +K 
Sbjct: 608 KLTISQPKSLGHAAQLPGVSKADLTALLVWLKIEKMKK 645


>gi|182678269|ref|YP_001832415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|205831489|sp|B2IJQ4|MNMG_BEII9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|182634152|gb|ACB94926.1| glucose inhibited division protein A [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 618

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/614 (55%), Positives = 444/614 (72%), Gaps = 1/614 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+V+GGGHAGCEAAA +A+LGA TAL+T   +TIGSMSCNPAIGGLGKGHLVRE
Sbjct: 1   MKGTYDVVVVGGGHAGCEAAAASARLGARTALVTQAFATIGSMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMGRVADAAGIQFRVLN  KGPAVRGPR QADR+LYR AMQ EI +   LDVI+
Sbjct: 61  IDALDGLMGRVADAAGIQFRVLNRAKGPAVRGPRAQADRKLYRAAMQAEIQAVNGLDVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE  G   +   I+ + +     + C+ VVLTTGTFLRG+IHIG+ ++ AGR+G++P+ +
Sbjct: 121 GEAEGLCFDGEKIAGV-LVGVETLACAAVVLTTGTFLRGLIHIGEKQVRAGRIGEAPAEA 179

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  +        GRLKTGTPARLDG++I W + E+Q  D    PFSF+T+ IT  Q++C 
Sbjct: 180 MGLALEALGLSMGRLKTGTPARLDGRSIDWSRLERQSGDVEPEPFSFLTEAITRPQVDCF 239

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T  ETH +I EN+ +S +YSG I   GPRYCPSIEDK+VRF +R  HQIFLEPEGL+
Sbjct: 240 ITTTTPETHAVIRENLHYSPVYSGAINGRGPRYCPSIEDKVVRFADREAHQIFLEPEGLD 299

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGISTALPE +Q +F+RTIPGLE V I++ GYAIEYDY++P+EL   LE K++ 
Sbjct: 300 VPTIYPNGISTALPESVQERFLRTIPGLEHVAILQHGYAIEYDYVDPRELTAGLEVKRVP 359

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEA AQGL+AG+N+A ++  L  I F R+++Y+GVMIDDL ++GV 
Sbjct: 360 GLFLAGQINGTTGYEEAGAQGLIAGLNAAARAGGLAPITFDRSEAYLGVMIDDLINRGVS 419

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  GM LGCIG++R + F    +  N  R LL  L
Sbjct: 420 EPYRMFTSRAEYRLTLRADNADQRLTGKGMILGCIGQQRAEIFKAKSEALNSARDLLAGL 479

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L+    +   +   +DG  RTA++ L+ PD +++ L SI P+ +     +  +++I++ 
Sbjct: 480 SLSPTEATRHGLKVNRDGVRRTAFDLLALPDVTLETLRSIWPELKTIPETIAAQIEIDAH 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  +    + +E   +P D DY+S+  LSNE++ +L+ ++P  L QA +IEGM
Sbjct: 540 YAVYLDRQEADIAAFRRDEGLALPTDLDYASMQGLSNEIRGRLAAIRPATLGQAGRIEGM 599

Query: 602 TPAALNLLLIYIKK 615
           TP AL LL   +++
Sbjct: 600 TPTALTLLAARVRR 613


>gi|154175126|ref|YP_001407617.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Campylobacter curvus 525.92]
 gi|112802522|gb|EAT99866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter curvus 525.92]
          Length = 631

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/616 (43%), Positives = 364/616 (59%), Gaps = 3/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               ++VIV+GGGHAG EA+  AAK+G  T LIT     IG+ SCNPAIGGL KGHLV+E
Sbjct: 12  FMDKFNVIVVGGGHAGIEASLAAAKMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKE 71

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q
Sbjct: 72  IDALGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQ 131

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                  +    I+ +     ++   + +++TTGTFL G+IH+G  K+ AGR+G+  S +
Sbjct: 132 EIATEILSANEQITGVKTHLGNVYETTKLIITTGTFLNGLIHVGFNKLKAGRVGELSSIN 191

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S      + GRLKTGT  R+D KTI +   E+Q  D +   FSF T      Q+ C 
Sbjct: 192 LSQSLRNLGLEMGRLKTGTCPRIDAKTIDFSVLERQEGDAKPAAFSFRTQHFAPEQLPCY 251

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+   
Sbjct: 252 IAYTNETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTRE 311

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG ST+LP ++Q   +R++ G E   I+R GYAIEYDY+ P EL  +LETKK+ 
Sbjct: 312 ASEYYINGFSTSLPYDVQVAMLRSVRGFENARIVRHGYAIEYDYVVPTELKHSLETKKVR 371

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+A   +  D +   R ++YIGV+IDDL +KG  
Sbjct: 372 GLYLAGQINGTTGYEEAAAQGLMAGINAALNLDAKDPLVLRRDEAYIGVLIDDLVTKGTK 431

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNA  RL   G +LG I +    R  +          +L + 
Sbjct: 432 EPYRMFTSRAEYRLLLREDNAILRLGGYGRELGLIDDETHARIEQIRVNLAKGLEILNTR 491

Query: 482 VLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
             T    +      +      +  T  + ++   F+ + L  +           +E++  
Sbjct: 492 EFTPSKQNLEFLAGLDEDVISEKVTLQKIVARKSFTSEKLRKLDAFFENLDEASLEQILT 551

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y+ Y   Q  +  ++K      IP++F +  +  LSNE+ EKL    P  L  AS+I
Sbjct: 552 ECKYSHYIAEQKNQIDKMKDMMSVKIPENFSFRGISGLSNEVVEKLEKFAPPTLFAASEI 611

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+++L IYIK
Sbjct: 612 SGITPAAIDILHIYIK 627


>gi|15618527|ref|NP_224813.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae CWL029]
 gi|15836149|ref|NP_300673.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae J138]
 gi|16752423|ref|NP_444682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae AR39]
 gi|33241974|ref|NP_876915.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydophila pneumoniae TW-183]
 gi|7674055|sp|Q9Z7T7|MNMG_CHLPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4376914|gb|AAD18756.1| FAD-dependent oxidoreductase [Chlamydophila pneumoniae CWL029]
 gi|7189065|gb|AAF38013.1| gidA protein [Chlamydophila pneumoniae AR39]
 gi|8978989|dbj|BAA98824.1| FAD-dependent oxidoreductase [Chlamydophila pneumoniae J138]
 gi|33236484|gb|AAP98572.1| GidA [Chlamydophila pneumoniae TW-183]
          Length = 611

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/616 (45%), Positives = 378/616 (61%), Gaps = 18/616 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +AK+G S  ++T    TI  +SCNPA+GG+GKGH+VREIDAL
Sbjct: 8   YDVIVVGAGHAGCEAAYCSAKMGVSVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M+R + +   L ++Q  V 
Sbjct: 68  GGIMAEVTDQSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLENTPGLHIMQATVE 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               ++ +IS +  ++  M    TVVL++GTF+RG+IHIG      GR+GD  S  L   
Sbjct: 128 SLLDKEGVISGVTTKEGWMFSGKTVVLSSGTFMRGLIHIGDRNFSGGRLGDPSSQGLSED 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGIT 243
             K  F   RLKTGTP RL   +I +   E+Q  D  +  F   T+       Q+ C IT
Sbjct: 188 LKKRGFPISRLKTGTPPRLLASSINFSCMEEQPGDLGVG-FVHRTEPFQPPLPQLSCFIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +T  II  N+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H +FLEPEGL+T 
Sbjct: 247 HTMEKTKAIISANLHRSALYGGCIEGVGPRYCPSIEDKIVKFSDKERHHVFLEPEGLHTQ 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG+ST++P ++Q+  IR++ GLE   I RP YAIEYDYI+   + PTLE+K I GL
Sbjct: 307 EIYANGLSTSMPFDVQYDMIRSVLGLENAIITRPAYAIEYDYIHGNVIHPTLESKLIEGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++ + EP
Sbjct: 367 FLCGQINGTTGYEEAAAQGLIAGINAVNKVFNRPPFIPSRQESYIGVMLDDLTTQILDEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFT RAE+R+ LR DNA  RL+  G +LG + E R +   K  Q     +  L+    
Sbjct: 427 YRMFTGRAEHRLLLRQDNACARLSHYGYELGLLSEERYELVKKQNQLLEEEKVRLQKT-- 484

Query: 484 TSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                      F+Q G++  +  + LS P+ S   L    P D R   +++   L++E  
Sbjct: 485 -----------FRQYGQSVVSLAKALSRPEVSYDMLREAFPNDIRDLGAVLNASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ I  + ++  E  LIP+D DY  + ALS E +EKL+   P  L  AS+I G+
Sbjct: 534 YSGYIDRQKILIQSLEKAESLLIPEDLDYKQITALSLEAQEKLAKFTPRTLGSASRISGI 593

Query: 602 TPAALNLLLIYIKKNT 617
             A + +L+I +KK+ 
Sbjct: 594 ASADIQVLMIALKKHA 609


>gi|163742611|ref|ZP_02149997.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
 gi|161384196|gb|EDQ08579.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
          Length = 624

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/603 (53%), Positives = 423/603 (70%), Gaps = 1/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +YDV+V+GGGHAG EAA  AA++G  TAL+T     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHPNYDVVVVGGGHAGTEAAHAAARMGVKTALVTLTKDGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  EI +Q NLD++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAEIEAQPNLDIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GEV  F    + I  + + D S I    V+LT+GTFLRGVIHIG +  P GRMGD PS 
Sbjct: 121 TGEVVDFLMTGDKIRGVRLADESEITSRAVILTSGTFLRGVIHIGDVSKPGGRMGDRPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      FD   GRLKTGTP RLDG+TI W+K E Q  D+    FSF+T  ++  Q+ C
Sbjct: 181 RLAERLDSFDLQLGRLKTGTPPRLDGRTIAWEKLEGQPGDDDPTFFSFLTTSVSASQVVC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN  TH II +N++ SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG+
Sbjct: 241 GITHTNTHTHDIIRDNLERSAMYGGHIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LP ++Q +++R+I GLE   I++PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DDHTVYPNGISTSLPLDVQERYVRSIVGLEDAVILQPGYAIEYDYVDPRALGLDLALKSY 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLVAG+N+AR S +++ + FSR+DSYIGVM+DDLT+ GV
Sbjct: 361 QGLYLAGQINGTTGYEEAAAQGLVAGLNAARYSKEMEPVTFSRSDSYIGVMVDDLTTNGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLT IG  LGC+GE R+  F++ +++    R+ + +
Sbjct: 421 TEPYRMFTSRAEFRLSLRADNADQRLTGIGSNLGCVGEVRRGLFSRKMEKLEEARAKMDA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              T K ++   I+  QDG  RTA + L++PD + +++  + PD       +  +++ ++
Sbjct: 481 RQFTPKEINEAGIAVNQDGNRRTATDVLAFPDVAFEDILRLLPDLETCEDPIRRQIERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E + +K +E   IP DF Y     LSNEL+ KL   +P  L QA +++G
Sbjct: 541 LYANYIIRQKREIEALKRDEGYRIPPDFSYD-FEGLSNELRGKLEKSRPETLAQAGRVDG 599

Query: 601 MTP 603
           MTP
Sbjct: 600 MTP 602


>gi|319760151|ref|YP_004124089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038865|gb|ADV33415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 636

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/611 (44%), Positives = 375/611 (61%), Gaps = 7/611 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+GGGHAG EAA  A++L   T LITH   T+G MSCNP+IGG+GKGHLV+EIDA
Sbjct: 6   NFDVIVVGGGHAGTEAALAASQLKCHTLLITHNIDTLGQMSCNPSIGGIGKGHLVKEIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G+M    D +GIQFR+LN  KG AV+  R QAD+ LY+  +++ +  Q  L ++Q  V
Sbjct: 66  MGGIMANAIDRSGIQFRILNSSKGAAVKSTRAQADKILYKQIIRQSLEDQSYLYILQASV 125

Query: 125 AGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
                  N +  +++ +  M I   +V+LTTGTFL G I+IG      GR GD  S+SL 
Sbjct: 126 EDVIIRHNKVMGVIIPNIEMKIFARSVILTTGTFLNGKIYIGMNNFEGGRAGDLESSSLL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
                +      RLKTGT  R+  K + ++   +Q +D  +  FSF+ + K   +QI C 
Sbjct: 186 SRRLQELSLKVNRLKTGTSPRIYAKGVNFECMVEQHSDCPIPVFSFIGSSKQHPKQIPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN +TH II  N+ HS +Y+G I    PRYCPSIEDK++RF +++ HQIFLEPEGL 
Sbjct: 246 ITHTNSKTHDIIRSNLHHSPVYAGLINGIPPRYCPSIEDKVIRFPDKDTHQIFLEPEGLT 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG++T+LP  +Q Q I++I GLE   I+RPGYAIEYD+ NP +L  TLE+K IS
Sbjct: 306 TSEIYLNGVATSLPFNVQIQIIQSIKGLENARILRPGYAIEYDFFNPIDLKLTLESKFIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFL+GQINGTTGYEEAAAQGL++GIN+AR +         R  SY+GV++DDL + G  
Sbjct: 366 GLFLSGQINGTTGYEEAAAQGLLSGINAARYAQNKTEWYPKRDQSYLGVLVDDLCTHGTT 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I + R + F    +         ++ 
Sbjct: 426 EPYRMFTSRAEYRLSLREDNADLRLTDIARQLGLITDNRWRIFCVKQENIEREFQRFRNT 485

Query: 482 VLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQ 537
            +       +   SI            + L  P+ +   L  +       S   V E+++
Sbjct: 486 YIFPNTTDIIKLNSILKVPLMNKVNGEDLLKRPEINYATLSQLSTFKPVISDNQVYEQIE 545

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA Y  RQ  E       E  L+P D +Y+++  LS E+ EKL+  +P+++ QAS+
Sbjct: 546 IQIKYAGYLNRQKEEIDRNLRNEDTLLPFDINYNNIVGLSTEVVEKLNYCRPYSVGQASR 605

Query: 598 IEGMTPAALNL 608
           I G+TP A+++
Sbjct: 606 ISGITPVAISI 616


>gi|120437623|ref|YP_863309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gramella forsetii KT0803]
 gi|205831516|sp|A0M6J7|MNMG_GRAFK RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117579773|emb|CAL68242.1| glucose inhibited division protein A [Gramella forsetii KT0803]
          Length = 623

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 379/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+G GHAG EAAA AA +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFEKQYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    + ++    NLD  
Sbjct: 61  EIDAMGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLKLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   E + +  +       +   +VV T GTFL G+IHIG  +   GR G+  + 
Sbjct: 121 QEMVAGLIIENDKVIGVRTSLGLEVFAKSVVCTNGTFLNGLIHIGDKQFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+DG+++ + K  +Q  D+    FS+  + K  ++Q  
Sbjct: 181 GITKDLIEVGFEAGRMKTGTPPRVDGRSLDYSKMTEQPGDDIPGKFSYSDETKPLSKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSNEVHDILKEGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA QG++AGIN+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAACQGMMAGINAALKVQEKDEFILKRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT     LG   E+R ++  +   +       LK
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTERSYNLGLASEKRMRKMEEKKDKSLKFVQYLK 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
            L +  +  +            ++   ++  S P  +++++ +           + +  +
Sbjct: 481 DLSVVPEEANPVLEKRNSSPMKQSDKVFKVFSRPQITMEDVKNFSGVEEFISENELNEEM 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+ +I+  Y+ Y  ++   A ++   E   IPK+FDYS++ ++S E +EKL  ++P  +
Sbjct: 541 IEQTEIQVKYSGYIEKEKNNADKLNRLEDMKIPKNFDYSNIKSMSYEAREKLKKVQPATV 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P  +++LL+Y+ +
Sbjct: 601 SQASRISGVSPNDISVLLVYMGR 623


>gi|330444143|ref|YP_004377129.1| glucose-inhibited division protein A [Chlamydophila pecorum E58]
 gi|328807253|gb|AEB41426.1| glucose-inhibited division protein A [Chlamydophila pecorum E58]
          Length = 612

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/617 (44%), Positives = 371/617 (60%), Gaps = 16/617 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAGCEAA  AAK+GA   ++T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   NYDVIVVGAGHAGCEAAYCAAKIGALVLMLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D  GIQFR+LN  KGPAVR PR Q D++LY + M+R +   ENL ++QG V
Sbjct: 67  LGGIMAEVTDQTGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKRLLEKTENLHIMQGTV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +++ IS +  ++       TVVL++GTF++G+IHIG+     GR+GD  S  L +
Sbjct: 127 VSLLDKESCISGVTTKEGVTYLGKTVVLSSGTFMQGLIHIGERNFSGGRLGDPASLGLSD 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGI 242
           S  +  F  GRLKTGTP RL   +I +   E+Q  D   + F    +       QI C I
Sbjct: 187 SLRQRGFPLGRLKTGTPPRLLASSIDFSSMEEQPGD-PGVGFVHRNEPFVPPLPQISCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T   T +II EN+  SA+Y G I+  GPRYCPSIEDKIV+F ++  H IFLEPEGL T
Sbjct: 246 THTTSATKQIIEENLHCSALYGGRIEGVGPRYCPSIEDKIVKFADKERHHIFLEPEGLYT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y NG+ST++P +IQ Q I ++ GLE   I+RP YAIEYDYI+   +  TLE+K I G
Sbjct: 306 QEIYANGLSTSMPCDIQRQIIHSVRGLEAAVIMRPAYAIEYDYIHGNVIHATLESKIIEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AGIN+  K         SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGINAVNKVLNRSPFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFT RAE+R+ LR DNA  RL   G  LG + + R + F          +  L+   
Sbjct: 426 PYRMFTGRAEHRLLLRQDNAGTRLAQYGYDLGLLSKERYEFFQNQKVRLEEEKQRLQKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
              +N               +  + L  P+ S   L  I P D +    ++   L++E  
Sbjct: 486 KKYEN------------SVVSLAKVLCRPEVSYDALQKIFPEDVQDLGPVLNASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ      +   E+  IP+D DY ++  LS E KEK +   P  L  AS+I G+
Sbjct: 534 YAGYISRQQTLISNLAKSEETAIPEDLDYQAIVGLSLEAKEKFTKFTPRTLGSASRISGI 593

Query: 602 TPAALNLLLIYIKKNTV 618
           + A + +L+I +KK+ +
Sbjct: 594 SSADIQVLMIALKKHAL 610


>gi|119382761|ref|YP_913817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paracoccus denitrificans PD1222]
 gi|166222715|sp|A1AXX7|MNMG_PARDP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|119372528|gb|ABL68121.1| glucose inhibited division protein A [Paracoccus denitrificans
           PD1222]
          Length = 619

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/616 (51%), Positives = 428/616 (69%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EAA  AA++G  TAL+T     IG+MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQFDVIVIGGGHAGVEAAMAAARMGVKTALVTLHRDDIGTMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MG++AD AGIQFR+LN +KGPAV+GPR QADR+LYR A  + +  Q+ L +I GE
Sbjct: 62  ALDGVMGKLADTAGIQFRLLNRRKGPAVQGPRAQADRKLYRSAAAKIVAGQDGLSLILGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E+  ++ + + D+S ++   ++LTTGTFL G+IHIG++   AGR G S S +L 
Sbjct: 122 AAELLHERGQVTGLRLADDSELQARQIILTTGTFLNGLIHIGEISRQAGRWGGSTSVTLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S    +   GRLKTGTP R+  ++I W+   +Q  DE  + FS++       Q+ C IT
Sbjct: 182 ASLRPLNLPLGRLKTGTPPRILRQSIDWESLHQQPGDEEPVMFSYLNTVPEAPQVSCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +THRII EN+  SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL++D
Sbjct: 242 HTNPDTHRIIRENLARSAMYGGRIDGVGPRYCPSIEDKVVRFADKESHQIFLEPEGLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LPE+IQ  ++R+I GLE+  I +PGYA+EYDY++P+ L  +LE K +SGL
Sbjct: 302 LVYPNGISTSLPEDIQLAYVRSIRGLERAQIAQPGYAVEYDYVDPRALAASLEVKNLSGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQGLVAG+N+A K+   + + FSR+ SYIGVMIDDLT++GV EP
Sbjct: 362 FLAGQINGTTGYEEAAAQGLVAGLNAALKAQGREALHFSRSQSYIGVMIDDLTTRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTP G+ +GC+G+ R+  F++ ++ Y   R   +S+  
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPFGIDIGCVGQERRAAFSEKMRRYTAARDRAESVSF 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   LS + I  + DG  R+ +  L+  +     + ++          +I +L  ++ Y 
Sbjct: 482 TPTELSRSGIEVRHDGARRSLFALLAQQEIPQDQVLALDDQLVLQDPAIIRQLATDALYH 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            YT RQ  +A+ ++ EE   IP +FDY +L  LSNELK KL+  +P  L  A+ IEGMTP
Sbjct: 542 QYTDRQGKDAELLRKEEAVAIPAEFDYDALSGLSNELKFKLNQHRPATLAAAANIEGMTP 601

Query: 604 AALNLLLIYIKKNTVK 619
           AAL L+L  I+    +
Sbjct: 602 AALTLILAVIRAGNRR 617


>gi|268318296|ref|YP_003292015.1| glucose inhibited division protein A [Rhodothermus marinus DSM
           4252]
 gi|262335830|gb|ACY49627.1| glucose inhibited division protein A [Rhodothermus marinus DSM
           4252]
          Length = 644

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/624 (46%), Positives = 393/624 (62%), Gaps = 8/624 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+GGGHAG EAAA AA++GA T LIT    TIG MSCNPAIGG+GKGHLVREI
Sbjct: 17  DERYDVIVVGGGHAGAEAAAAAARMGARTLLITMSLETIGRMSCNPAIGGIGKGHLVREI 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+MGR+AD  GIQFR+LN  KGPAV GPR Q DR+ Y  A++ E+ S  NL +   
Sbjct: 77  DALGGIMGRMADQTGIQFRMLNRSKGPAVWGPRAQCDRKRYAEAVRHELESIPNLWMRAD 136

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +  Q         V+LT GTFL GVIH+G+ ++  GRMG+  +  L
Sbjct: 137 TVTEVLVEDRRVKGVRTQLGKTFYAPCVILTNGTFLNGVIHVGERQLGGGRMGERAATGL 196

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                +  F++GRLKTGTP R+DG+TI + + ++Q  D   +PFS+MTD++ +RQ+ C +
Sbjct: 197 TACLERLGFESGRLKTGTPPRIDGRTIDYSRLQEQPGDSEPLPFSYMTDRLPDRQLSCWL 256

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H I+      S +++G IK  GPRYCPSIEDKI RF ER+ H IFLEPEG +T
Sbjct: 257 TYTTPEVHAILRTGFDRSPMFTGRIKGRGPRYCPSIEDKIERFAERDRHPIFLEPEGWDT 316

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG ST+LPEE+Q   +R IPGLE+V+++RPGYAIEYDY  P ++  +LETK + G
Sbjct: 317 YEVYVNGFSTSLPEEVQVAALRKIPGLERVHVLRPGYAIEYDYFPPYQIRYSLETKYVEG 376

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AGIN+ +K    + +   R+++YIGV+IDDL +KG  E
Sbjct: 377 LFFAGQINGTTGYEEAAAQGLMAGINAVQKLRGAEPVVLRRSEAYIGVLIDDLVAKGTDE 436

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+RI LR DNAD RLT +G +LG     R +R  K  +     R  L+   
Sbjct: 437 PYRMFTSRAEHRILLRQDNADLRLTELGYRLGLATRERYERMLKKKEAIARTRRALEETT 496

Query: 483 LTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIE 534
           +  + ++     +      +          P  ++++L        +          V  
Sbjct: 497 VRPEQVNGYLERVGTSPIDRPERLVRLALRPQVNLRDLLEATGLREQVVVPAPGMEPVEM 556

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++IE  Y  Y  R+    ++++  E   IP DFDY ++  +S E +EKLS ++P NL Q
Sbjct: 557 LVEIELKYEGYMDRERELVEKMRELEDWRIPPDFDYEAVETISKEAREKLSKIRPENLGQ 616

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++L++ +++   
Sbjct: 617 ASRISGVRPADISVLMVLLRRYRR 640


>gi|282879091|ref|ZP_06287851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccalis ATCC 35310]
 gi|281298825|gb|EFA91234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccalis ATCC 35310]
          Length = 626

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/623 (40%), Positives = 357/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVI+IGGGHAGCEAA  +A +GAST LIT   + +G MSCNPAIGG+ KG +VRE
Sbjct: 4   MKFKYDVIIIGGGHAGCEAATASANIGASTCLITMDMNKVGQMSCNPAIGGIAKGQIVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + DA  IQFR+LN  KGPAV  PR Q DR  Y    ++ + +  NLD+ Q
Sbjct: 64  IDALGGQMGLITDATAIQFRMLNKGKGPAVWSPRAQCDRGKYIWEWRKVLDNTPNLDIWQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E      +        R  +VV+T GTFL G++HIG+ ++P GR  +     
Sbjct: 124 DEARELIVENGEAVGVNTVWGVEFRAKSVVITAGTFLNGLMHIGRHQLPGGRCAEPAVYH 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +      R+KTGTP R+D +T+ ++  E+Q  +     FS+M +    +Q+ C 
Sbjct: 184 LSESISRHGIRVDRMKTGTPVRIDARTVHFEDMERQDGENDFHQFSYMGEPRKLKQLPCW 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++ + +  S +++G I+S GPRYCPS+E K+V F +++ H +FLEPEG  
Sbjct: 244 TCYTNQECHEVLRQGLSDSPLFNGQIQSTGPRYCPSVETKLVTFPDKDQHPLFLEPEGEC 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P  IQ + I  IP      I R GYAIEYDY +P +L  TLE+K + 
Sbjct: 304 TNEMYLNGFSSSMPLHIQLEAIHKIPAFRDAKIYRAGYAIEYDYFDPTQLKRTLESKVLK 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQ+NGTTGYEEAA QGLVAG+N+A      +     R +SYIGV+IDDLT+KGV 
Sbjct: 364 GLFLAGQVNGTTGYEEAAGQGLVAGVNAALHCTNSEPFIMHRDESYIGVLIDDLTTKGVD 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +    L       
Sbjct: 424 EPYRMFTSRAEYRILLRQDDADARLTEKAYQLGLANRERYDWWMEKKESIKALLDFCNQT 483

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +  K +++   SI       T    + +  P  S+  L       ++           +
Sbjct: 484 PIKPKEINNFLESIGTSPLHGTSKISDLVGRPQVSLTQLAEHITTLKEMLNKPRNRKEEI 543

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++       I   F YS L  LS E ++KL  + P  L
Sbjct: 544 AEATEIKIKYKGYIEREKLMAEKMHRLRDIKIKGRFQYSELHELSTEARQKLERIDPETL 603

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 604 AQASRIPGISPSDINVLLVLLGR 626


>gi|116514951|ref|YP_802580.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|122285653|sp|Q058G2|MNMG_BUCCC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116256805|gb|ABJ90487.1| glucose inhibited division protein A [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 634

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/615 (46%), Positives = 394/615 (64%), Gaps = 8/615 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +D+IVIG GHAG EAA+ ++++G  T LIT K STIG++SCNPAIGGLGK  LV+E
Sbjct: 3   FYEKFDIIVIGAGHAGTEAASASSRMGQKTLLITQKRSTIGTLSCNPAIGGLGKSQLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLM +V D +GIQFR+LN KKG AVR  R QADR LY+  M   + +Q+NL + +
Sbjct: 63  IDALGGLMAKVIDYSGIQFRILNSKKGYAVRSTRAQADRFLYQKNMNYFLNNQKNLTIFE 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    +   +  I+  D  + + S V+LT GTFL G ++IG      GR  D  ++ 
Sbjct: 123 QEVSDIIIKNYQVQGIITSDGKIFKSSIVILTAGTFLNGKMYIGSDVFDGGRRNDVSASI 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L N+  K+    GRLKTGTP RL  K+I +D  +KQ+ D     FSF+   +   +Q+ C
Sbjct: 183 LANNLKKYFSKIGRLKTGTPPRLKKKSINFDILKKQYGDYPTPVFSFLGKIEQHPKQVPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II +N+  S +YSG I   GPRYCPSIEDKI++F ++  HQIFLEPEG+
Sbjct: 243 YITYTNDHTHSIIKKNLHLSPLYSGSITGIGPRYCPSIEDKIIKFPDKISHQIFLEPEGI 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N++++YPNGIST+LP++IQ   I++I GLE  +I+  GYA+EYDY +P++L  TLE+KKI
Sbjct: 303 NSEIIYPNGISTSLPKDIQVDLIQSISGLENAHIVHSGYAVEYDYFDPRDLKMTLESKKI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF+AGQINGTTGYEEAAAQGL+AG+N+A K    D     R ++YIGV+IDDL SKG 
Sbjct: 363 KNLFMAGQINGTTGYEEAAAQGLIAGLNAALKIQCKDTWYPKRNEAYIGVLIDDLCSKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR +NAD RLT IG KLG I + R K F+K     +  R+ LK+
Sbjct: 423 SEPYRMFTSRAEYRLLLRENNADERLTTIGYKLGLIDDFRWKIFSKKQDSISRERNRLKN 482

Query: 481 LVLTSKNL--SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-----FSSLVI 533
           ++L  K +  SS +       K  TA++ L  P+ S  +L        K      +  + 
Sbjct: 483 IILQPKTVFFSSNNKKTIYLKKKCTAFDLLRRPEISYNDLILFLNSFLKKKIVIKNKEIT 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ +S Y  Y  RQ  E K+ K+ E + +    DY  +  LSNE   KL+  +P ++ 
Sbjct: 543 EEIETQSKYFGYIQRQEKEIKKYKYYENKKLYCIKDYREILGLSNEAIIKLNKYRPSSIG 602

Query: 594 QASKIEGMTPAALNL 608
           QA +I G+TP  +++
Sbjct: 603 QALRISGITPVTISI 617


>gi|257460598|ref|ZP_05625699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter gracilis RM3268]
 gi|257441929|gb|EEV17071.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter gracilis RM3268]
          Length = 630

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/619 (44%), Positives = 373/619 (60%), Gaps = 7/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EA+  AAK+GA T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   KYDVIVVGGGHAGIEASLAAAKMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  ADA G+QFR+LN  KGPAVRG R Q D + YR+ M+  +L+ + LD+ Q   
Sbjct: 62  LGGQMGLAADACGLQFRILNESKGPAVRGSRAQIDMDEYRIYMRNLLLNTQGLDISQEIA 121

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +   T     +  +  +     ++     +++T GTFL G+IH+G+ K+ AGR+G+  S 
Sbjct: 122 SEILTCEQGGEQRVCGVKSHLGNVYETERLIITAGTFLNGLIHVGENKLQAGRVGELASV 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S        GRLKTGT  R+D KTI +   E+Q  D    PFSF +     +Q+ C
Sbjct: 182 ELAESLRSLGLQMGRLKTGTCPRIDAKTIDFSVLERQDGDADPRPFSFRSKDFAPKQLAC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN  TH II EN   + +++G I S GPRYCPSIE KI  F  R+ H +F+EP+  
Sbjct: 242 FIAYTNERTHEIIRENFTRAPMFTGQISSTGPRYCPSIETKIYEFPNRDRHHVFVEPQTR 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q  F+RTI G E   I+RPGYAIEYD+I+P EL  +LETKKI
Sbjct: 302 EATEYYVNGLSTSLPYDVQIAFLRTIRGFENAKIVRPGYAIEYDFIDPTELKHSLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL+AGIN+         +   R ++YIGV+IDDL +KG 
Sbjct: 362 RGLFLAGQINGTTGYEEAAAQGLMAGINAVLDLRGRQPLILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR  NA  RL+  G ++G + E   +R +K+  +       L  
Sbjct: 422 NEPYRMFTSRAEFRLLLREGNAVLRLSEYGREIGLLDEASYERASKFKHDVQSGMEFLLK 481

Query: 481 LVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +T    +     SI  +   ++ +  +  S   FS   L ++ P  + FS  V++ + 
Sbjct: 482 TQITPSKQTLSLLQSIGAEPISQSCSLQKIASQSGFSKAGLLALVPHFKGFSDEVLDEIL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            +  Y  Y   Q  E + +K      IP   D+S +  LSNE+ +KL+   P  L  AS+
Sbjct: 542 TQCKYHFYIAMQRAEVERMKGLLDVAIPPQIDFSKIGGLSNEIVQKLNRFAPPTLFAASE 601

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+TPAA+++L IYIK+N
Sbjct: 602 ISGVTPAAIDILHIYIKQN 620


>gi|205831577|sp|Q2LXU8|MNMG_SYNAS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 639

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/625 (43%), Positives = 377/625 (60%), Gaps = 10/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+G GHAGCEAA  A+++G  T L      +I  MSCNPAIGGL KG LV+EID
Sbjct: 2   RQFDVIVVGAGHAGCEAALAASRMGCETLLFNINLDSIALMSCNPAIGGLAKGQLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR+AD   + FR+LN  KGPAV+  R Q D++LYRLAM+  +  Q  L + Q  
Sbjct: 62  ALGGEMGRMADKTAVHFRILNASKGPAVQSSRVQCDKQLYRLAMKSVVERQPKLHLFQSL 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   I+ +  Q         VV+TTGTFL G++H+G    PAGR G+  S SL 
Sbjct: 122 VDCLLVKDGQITGVADQTGVCFGAKAVVITTGTFLNGLVHVGTSHYPAGRAGEIASISLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N   K  F+ GR+KTGTP RL   TI + + E+Q +D    PFS  T+++   ++     
Sbjct: 182 NCLRKMGFEMGRMKTGTPPRLKASTIDFSRLERQDSDPAFEPFSLSTERLGKERLPSYFG 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I +NI+ S +YSG IK    RYCPS+EDK++RF ++  H + LE EGL T+
Sbjct: 242 YTTSETHRLIRDNIRFSPLYSGVIKGVSARYCPSLEDKVMRFADKGRHPVVLEFEGLETE 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+  +LP ++Q Q + ++PGLE   I+R  YAIEYD++ P +L  TLETK++ GL
Sbjct: 302 EVYAKGLGNSLPLDLQEQIVHSVPGLENSEILRSAYAIEYDFVQPTQLNHTLETKRVRGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQG+ AGIN+A            R+++Y+GV+IDDL ++GV EP
Sbjct: 362 YLAGQINGTSGYEEAAAQGMWAGINAALAVQGRPPFVLDRSEAYMGVLIDDLVTQGVDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNA  RLTP G  LG I +   ++ ++ I+        L S  +
Sbjct: 422 YRMFTSRAEYRLILREDNAALRLTPRGFDLGLIPQDLHEQISERIRRIEEGMKCLSSFKI 481

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNL--FSICPDARK-----FSSLVI 533
                 ++ +            T ++ L   D S ++L  F   PD  +     +  ++ 
Sbjct: 482 YPGTAVNSKLEEHGSPAIKNPVTLFQLLKRTDLSWEDLSMFQDLPDFPEDVPDGYDRMIR 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           ++++IE+ Y  Y  RQ      +K  E R IP   DYS++P LSNEL+ KL+ ++P  + 
Sbjct: 542 KQIEIEAKYEGYIQRQREAVVRMKALESRRIPPGMDYSAIPGLSNELRMKLARVEPETIG 601

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QA +I GMT AAL  ++I IKK   
Sbjct: 602 QARRITGMTQAALAAVMIMIKKKEQ 626


>gi|85860875|ref|YP_463077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophus aciditrophicus SB]
 gi|85723966|gb|ABC78909.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit [Syntrophus aciditrophicus SB]
          Length = 661

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/625 (43%), Positives = 377/625 (60%), Gaps = 10/625 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+G GHAGCEAA  A+++G  T L      +I  MSCNPAIGGL KG LV+EID
Sbjct: 24  RQFDVIVVGAGHAGCEAALAASRMGCETLLFNINLDSIALMSCNPAIGGLAKGQLVKEID 83

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR+AD   + FR+LN  KGPAV+  R Q D++LYRLAM+  +  Q  L + Q  
Sbjct: 84  ALGGEMGRMADKTAVHFRILNASKGPAVQSSRVQCDKQLYRLAMKSVVERQPKLHLFQSL 143

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   I+ +  Q         VV+TTGTFL G++H+G    PAGR G+  S SL 
Sbjct: 144 VDCLLVKDGQITGVADQTGVCFGAKAVVITTGTFLNGLVHVGTSHYPAGRAGEIASISLA 203

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N   K  F+ GR+KTGTP RL   TI + + E+Q +D    PFS  T+++   ++     
Sbjct: 204 NCLRKMGFEMGRMKTGTPPRLKASTIDFSRLERQDSDPAFEPFSLSTERLGKERLPSYFG 263

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I +NI+ S +YSG IK    RYCPS+EDK++RF ++  H + LE EGL T+
Sbjct: 264 YTTSETHRLIRDNIRFSPLYSGVIKGVSARYCPSLEDKVMRFADKGRHPVVLEFEGLETE 323

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G+  +LP ++Q Q + ++PGLE   I+R  YAIEYD++ P +L  TLETK++ GL
Sbjct: 324 EVYAKGLGNSLPLDLQEQIVHSVPGLENSEILRSAYAIEYDFVQPTQLNHTLETKRVRGL 383

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGT+GYEEAAAQG+ AGIN+A            R+++Y+GV+IDDL ++GV EP
Sbjct: 384 YLAGQINGTSGYEEAAAQGMWAGINAALAVQGRPPFVLDRSEAYMGVLIDDLVTQGVDEP 443

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNA  RLTP G  LG I +   ++ ++ I+        L S  +
Sbjct: 444 YRMFTSRAEYRLILREDNAALRLTPRGFDLGLIPQDLHEQISERIRRIEEGMKCLSSFKI 503

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNL--FSICPDARK-----FSSLVI 533
                 ++ +            T ++ L   D S ++L  F   PD  +     +  ++ 
Sbjct: 504 YPGTAVNSKLEEHGSPAIKNPVTLFQLLKRTDLSWEDLSMFQDLPDFPEDVPDGYDRMIR 563

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           ++++IE+ Y  Y  RQ      +K  E R IP   DYS++P LSNEL+ KL+ ++P  + 
Sbjct: 564 KQIEIEAKYEGYIQRQREAVVRMKALESRRIPPGMDYSAIPGLSNELRMKLARVEPETIG 623

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
           QA +I GMT AAL  ++I IKK   
Sbjct: 624 QARRITGMTQAALAAVMIMIKKKEQ 648


>gi|205831543|sp|A7GWM5|MNMG_CAMC5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 619

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/613 (43%), Positives = 364/613 (59%), Gaps = 3/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            ++VIV+GGGHAG EA+  AAK+G  T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 3   KFNVIVVGGGHAGIEASLAAAKMGKKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFRVLN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 63  LGGQMGLTTDAVGIQFRVLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEISQEIA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +    I+ +     ++   + +++TTGTFL G+IH+G  K+ AGR+G+  S +L  
Sbjct: 123 TEILSANEQITGVKTHLGNVYETTKLIITTGTFLNGLIHVGFNKLKAGRVGELSSINLSQ 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S      + GRLKTGT  R+D KTI +   E+Q  D +   FSF T      Q+ C I  
Sbjct: 183 SLRNLGLEMGRLKTGTCPRIDAKTIDFSVLERQEGDAKPAAFSFRTQHFAPEQLPCYIAY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R+ H +F+EP+      
Sbjct: 243 TNETTHEIIRSNFDKAPLFTGQIEGIGPRYCPSIEDKINRFGDRDRHHLFIEPQTREASE 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP ++Q   +R++ G E   I+R GYAIEYDY+ P EL  +LETKK+ GL+
Sbjct: 303 YYINGFSTSLPYDVQVAMLRSVRGFENARIVRHGYAIEYDYVVPTELKHSLETKKVRGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A   +  D +   R ++YIGV+IDDL +KG  EPY
Sbjct: 363 LAGQINGTTGYEEAAAQGLMAGINAALNLDAKDPLVLRRDEAYIGVLIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNA  RL   G +LG I +    R  +          +L +   T
Sbjct: 423 RMFTSRAEYRLLLREDNAILRLGGYGRELGLIDDETHARIEQIRVNLAKGLEILNTREFT 482

Query: 485 SKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +      +      +  T  + ++   F+ + L  +           +E++  E  
Sbjct: 483 PSKQNLEFLAGLDEDVISEKVTLQKIVARKSFTSEKLRKLDAFFENLDEASLEQILTECK 542

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y   Q  +  ++K      IP++F +  +  LSNE+ EKL    P  L  AS+I G+
Sbjct: 543 YSHYIAEQKNQIDKMKDMMSVKIPENFSFRGISGLSNEVVEKLEKFAPPTLFAASEISGI 602

Query: 602 TPAALNLLLIYIK 614
           TPAA+++L IYIK
Sbjct: 603 TPAAIDILHIYIK 615


>gi|333029486|ref|ZP_08457547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides coprosuis DSM 18011]
 gi|332740083|gb|EGJ70565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides coprosuis DSM 18011]
          Length = 624

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/624 (41%), Positives = 363/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAA  AA+LG+ T LIT   + I  MSCNPAIGG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAATAAARLGSKTCLITMDMNKIAQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D   IQFR+LN  KGPA+  PR Q DR  Y    +  + S +NLD+ Q
Sbjct: 61  IDALGGEMGLITDRTAIQFRMLNRSKGPAMWSPRAQCDRNKYIWEWREVLDSTDNLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   +  +     +     ++++T GTFL G++H+GK ++P GRM +  S  
Sbjct: 121 DSVKDLIIKDGQVIGVNTLWEATFYAKSIIITAGTFLNGLMHVGKTQLPGGRMAEPASYY 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L  S   +     R+KTGTP R+D +++ ++  E Q  D+    FSFM T K     + C
Sbjct: 181 LTESINSYGIRFDRMKTGTPVRIDSRSVHFEDMEPQEGDDDFHKFSFMDTGKRHLDALPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               T  E+H  + + +  S +Y+G IKS GPRYCPS+E KIV F  +  HQ+FLEPEG+
Sbjct: 241 WTCYTTPESHETLRKGLVDSPLYNGQIKSIGPRYCPSVETKIVNFPTKEKHQLFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ +Y NG S++LP +IQ + +R IP    V++ RPGYAIEYD+ +P +L  TLE+K I
Sbjct: 301 ITNEMYLNGFSSSLPMDIQLKALRQIPAFRDVHVYRPGYAIEYDFFDPTQLTHTLESKVI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QGL+AGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGLIAGINAHINCHGGKEFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLTP    LG     R   ++   ++ + +     +
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTPKAWDLGLASRERYNLYSSKKEQIDRILEFANN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +    ++     +            E L+ P  + +N+    P    +          
Sbjct: 481 YSVKPAYINEALEKLGTTSLKHGCKLIEVLTRPQITFENIQDSIPAFKEELDKIKGRREE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y+ Y  R+ + A++ K  E   I   FDYS + +LS E +EKL  + P N
Sbjct: 541 IIEAAEILVKYSGYIEREKLIAEKTKRLENIKIRGKFDYSQIHSLSFEAREKLQKIDPEN 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ ++K
Sbjct: 601 IAQASRIPGVSPSDINVLLVLVRK 624


>gi|116074137|ref|ZP_01471399.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
 gi|116069442|gb|EAU75194.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
          Length = 659

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/639 (42%), Positives = 374/639 (58%), Gaps = 20/639 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TEVFDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   + +                 I+ +     S+     VVLT GTFL G I +G 
Sbjct: 128 MVTGLEIDGDPSGGGEQWDPSQGPAARITGVRTYFGSVYGAKAVVLTAGTFLGGRIWVGH 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  +  L  +  +  F T RLKTGTPAR+D ++I  D  E+Q +D     F
Sbjct: 188 QSMAAGRAGEQAAEGLTEALQQLGFQTDRLKTGTPARVDRRSIALDLLEEQPSDAADRFF 247

Query: 227 SFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF      +  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPAAWASGEQMSCHITRTTAATHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLEK  ++RP Y+++YDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEKAVMLRPAYSVDYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +L P+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    D + F R  
Sbjct: 368 LPATQLLPSLETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQDAVHFPRQG 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F 
Sbjct: 428 SYIGTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQLFE 487

Query: 466 KYIQEYNFLRSLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
           + +      +  L++  L        +  + +      + T  + L  P     +L    
Sbjct: 488 EKLSAMEAEKKRLETQRLKVSDPVAPAVEAETGAPIKGSITLADLLRRPGMHAADLVRHG 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    V E  +I+  Y+ Y  RQ  +  ++K + +R +P+  DYS +  LS E +E
Sbjct: 548 LADADLPLQVREGAEIDIKYSGYLQRQQQQIDQVKRQGQRKLPETIDYSGIGTLSREARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           KLS ++P  L QAS+I G++ A L  LL++++    +  
Sbjct: 608 KLSAVRPLTLGQASQIPGVSQADLTALLMWLELQQRRST 646


>gi|323343709|ref|ZP_08083936.1| glucose inhibited division protein A [Prevotella oralis ATCC 33269]
 gi|323095528|gb|EFZ38102.1| glucose inhibited division protein A [Prevotella oralis ATCC 33269]
          Length = 625

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/624 (39%), Positives = 365/624 (58%), Gaps = 9/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YDVIV+GGGHAGCEAA  +A +GA T L+T   + I  MSCNPA+GG+ KG +VR
Sbjct: 2   MMIFKYDVIVVGGGHAGCEAATASANMGADTCLVTMDMNKIAQMSCNPAVGGIAKGQIVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG V D   IQFR+LN  KGPAV  PR Q DRE +    ++ + +  NL + 
Sbjct: 62  EIDALGGQMGHVTDETAIQFRMLNKGKGPAVWSPRAQCDREKFIWKWRQILDNTPNLSIW 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +      + N    I       +R  ++++T GTFL G++HIG+ ++  GR  +    
Sbjct: 122 QDQANELIVKNNEAVGIKTIWGVELRAKSIIITAGTFLNGLMHIGRHQVTGGRCAEPAVP 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +   S  ++     R+KTGTP R+D +++ +++ E Q  +     FS+M +    RQ+ C
Sbjct: 182 NFTESITRWGIRAERMKTGTPVRIDKRSVHFEEMEIQPGENDFHQFSYMGNYRVLRQLPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               T  E H I+ + +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG 
Sbjct: 242 WTCYTTKECHDILHQGLADSPLFNGQIQSIGPRYCPSIETKLVTFPDKDQHPLFLEPEGE 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y NG S+++P ++Q + I  IP L    I RPGYAIEYDY +P +L  +LE+K I
Sbjct: 302 DTNEMYLNGFSSSMPMDVQLKAIHQIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKII 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GLF AGQ+NGTTGYEEA  QGLVAG+N+A      +     R +SYIGV+IDDLT+KGV
Sbjct: 362 AGLFFAGQVNGTTGYEEAGGQGLVAGVNAALHCTNAEPFVMKRDESYIGVLIDDLTTKGV 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT     LG   + R   + +       + +   +
Sbjct: 422 DEPYRMFTSRAEYRILLRQDDADARLTEKSYTLGLAKKDRYDWWIEKKNAIKHILNYCNN 481

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSL 531
             + +K+++S   +I            + +  P   ++ L +  P+ ++           
Sbjct: 482 TSVKAKDINSALGAIGTTPLRMGCKISDLIGRPQVGLKYLANFIPELKEIINTPTNRKEE 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y  R+ + A++++  E   I   F Y  L  LS E ++KL  + P  
Sbjct: 542 IIEASEINIKYKGYIERERMIAEKMRRLEDIKIKDRFKYKELHELSTEARQKLERINPET 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +N+LLI + +
Sbjct: 602 LAQASRIPGISPSDINVLLILLGR 625


>gi|283778885|ref|YP_003369640.1| glucose inhibited division protein A [Pirellula staleyi DSM 6068]
 gi|283437338|gb|ADB15780.1| glucose inhibited division protein A [Pirellula staleyi DSM 6068]
          Length = 613

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/619 (44%), Positives = 380/619 (61%), Gaps = 25/619 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAG EAA  AA++GA   L+T    T+G MSCNPAIGG+ KG +VREIDA
Sbjct: 7   DYDVLVIGGGHAGVEAAMAAARIGARVGLLTTNCDTVGQMSCNPAIGGVAKGQIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG V DA GIQFR+LN +KGPA+  PR QAD++ Y+  ++R I ++ N+ + Q  V
Sbjct: 67  LGGLMGEVIDATGIQFRLLNRRKGPAMHSPRAQADKKAYQFEVKRRIEAEPNIALRQETV 126

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               TE       I  + ++ + + R  +VVLTTGTFL  ++H G++K P GR G+  ++
Sbjct: 127 EDLLTETTADGERIVGVRVRGDVVYRAKSVVLTTGTFLSAIMHTGEVKTPGGRAGEGTTS 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-----ITN 235
            +  +  +  F   R KTGTP RL+G+TI + KTE Q  D+   PFSF+T +     I  
Sbjct: 187 GISGALARLGFRVSRFKTGTPCRLNGRTIDYSKTEIQPGDDDPQPFSFLTPRSFRSTIVA 246

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C IT TN   H +I EN+  + +YSG I S GPRYCPSIEDKIVRF ++  HQ+FL
Sbjct: 247 AQMPCWITHTNAAVHDLIRENLHRAPMYSGQIHSRGPRYCPSIEDKIVRFADKESHQLFL 306

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG +T  VY NGIST+LP ++Q   +R I GLE   I+R GYA+EYDY  P +L+P L
Sbjct: 307 EPEGRHTTEVYVNGISTSLPRDVQDGMLRLIAGLENAQIMRYGYAVEYDYCPPDQLWPWL 366

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK + GLF AGQINGTTGYEEAAAQGLVAG ++A K      +  SR ++YIGV++DDL
Sbjct: 367 ETKSVPGLFFAGQINGTTGYEEAAAQGLVAGASAALKVAGKAPLTISRDEAYIGVLVDDL 426

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            + GV EPYRMFTSRAE+R+ LR DNAD RLT +G + G +   R     +   E     
Sbjct: 427 VTCGVDEPYRMFTSRAEFRLLLRQDNADRRLTALGAEAGLVSAERLALLHQKEAEIARAM 486

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           ++L+   +                   +  ++L  P+     L ++  +  +      E+
Sbjct: 487 AILRRGRMG----------------EISLEKWLRRPEVDWPQLVAVEGELAEIGPDAAEQ 530

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +  +  Y  Y  RQ  + +  +    + IP+  DY S+  L  E KEKLS ++P  L QA
Sbjct: 531 VMFDVKYEGYLTRQEQQVERQRRLSDKTIPERLDYQSIRHLRTEAKEKLSKIRPVTLAQA 590

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+TPA + L++ Y++
Sbjct: 591 SRISGITPADVALVMAYLE 609


>gi|160944276|ref|ZP_02091505.1| hypothetical protein FAEPRAM212_01785 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444458|gb|EDP21462.1| hypothetical protein FAEPRAM212_01785 [Faecalibacterium prausnitzii
           M21/2]
          Length = 624

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/619 (43%), Positives = 373/619 (60%), Gaps = 6/619 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DA
Sbjct: 6   DYDVIVIGAGHAGIEAAHAAAVLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA  +Q R+LN  KGPAV   R Q DR  Y   M+  +     L + Q EV
Sbjct: 66  LGGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRRRYNEYMKHALEQTPGLAIHQAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  ++ Q +       VVL TGT L G I +G     +G  G   +N+L +
Sbjct: 126 VALEVENGHVKGVITQLHGEYTAKCVVLATGTNLGGKIFVGDAWYASGPDGMHAANALTD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER--LIPFSFMTDKITNRQIECGI 242
           S         R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I
Sbjct: 186 SLKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPLHNKVECWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETH+II++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H +F+EP G NT
Sbjct: 246 AYTNPETHKIILDNIQRSPLYGGIIEGVGPRYCPSIEDKVVRFSGKDRHPLFVEPCGENT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G S++LPE++Q+ F  +I G E + I+RP YAIEYD ++P  L  TLE+K + G
Sbjct: 306 EEMYLQGASSSLPEDVQNAFYHSIKGFEHLEIMRPAYAIEYDCVDPTSLEATLESKVVRG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AG+N+AR +   + +   R  SY+G ++DDL +KGV++
Sbjct: 366 LYGAGQFNGTSGYEEAAAQGLLAGLNAARNALGKEQLVLPRHTSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++    Q     R  L    
Sbjct: 426 PYRMMTSRSEYRLTLRQDNADQRLTPIGREYGLVQDDRWAKYQHTQQILEAERRRLHEAH 485

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L + +L +   ++      +   A E L  P+ S   +  I     + + ++ ERL+ E 
Sbjct: 486 LRTADLRAAMEAVGLAPAAEGGIAEELLRRPEISYPLVAGIIGWGDEITPMLAERLETEI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ    +E+   EK LIP+DF+Y++L  L+ E +EKL+ ++P NL QA +I G
Sbjct: 546 KYAGYIARQDRMIREVARHEKTLIPEDFEYAALTGLTLEAREKLARIRPRNLGQAGRIPG 605

Query: 601 MTPAALNLLLIYI--KKNT 617
           ++P+ +  L I +  K+  
Sbjct: 606 VSPSDVAQLSIALAGKQQK 624


>gi|225012535|ref|ZP_03702971.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-2A]
 gi|225003512|gb|EEG41486.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-2A]
          Length = 623

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 387/623 (62%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +RS+DVIV+G GHAGCEAAA AA LG+ T LIT    T G MSCNPA+GG+ KG +VR
Sbjct: 1   MFDRSFDVIVVGAGHAGCEAAAAAANLGSKTLLITMNLQTTGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V D   IQ+++LN  KGPA+  PR Q+DR ++ L  +  +    NLD  
Sbjct: 61  EIDALGGYSGIVTDRTAIQYKMLNQSKGPAMWSPRAQSDRSMFSLEWRSMLEKTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E++++  +V      I   +V+LT GTFL G+IHIG+     GR G+  + 
Sbjct: 121 QEMVVDLIVEQDLVKGVVTSLGLKIFGKSVILTNGTFLNGLIHIGEKNFGGGRAGEKAAV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            L  S     F++GR+KTGTP R+DG+++ + K ++Q  D     FSF    K   RQ+ 
Sbjct: 181 GLTTSLENLGFESGRMKTGTPPRVDGRSLDYTKMQEQPGDVTPSKFSFSDLTKPLTRQLS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TNL+ H I+      S +++G I+S GPRYCPSIEDKI RF +++ HQIF+EPEG
Sbjct: 241 CHITHTNLDVHDILRSGFDRSPMFNGAIQSTGPRYCPSIEDKINRFSDKSQHQIFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LP++IQ++ ++++ G E V   RPGYAIEYDY  P +LF +LETK 
Sbjct: 301 WNTVEVYVNGFSTSLPDDIQYKALKSVVGFENVKFFRPGYAIEYDYFPPTQLFHSLETKN 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQINGTTGYEEAAAQGL+AGIN+  K++        R ++YIGV+IDDL  KG
Sbjct: 361 VQNLFFAGQINGTTGYEEAAAQGLMAGINAHLKASDKSPFVLGREEAYIGVLIDDLILKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP    +G +G+ R K+  +  Q+   L   L+
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADERLTPKAHSIGLLGDDRLKKVEQKQQQRADLVRFLR 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT--AYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
                    ++  ++ K D  T+T    + LS P  + ++L          +  +    V
Sbjct: 481 KTSYELNTANTVLLNNKSDTVTQTDKFAKLLSRPSITRKDLHQFKSINSYLNDFEIDDTV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+ +IE  YA Y  ++   A ++K  E  +IP+ F++  L +LS+E KEKL+ ++P  +
Sbjct: 541 FEQAEIEIKYAGYIEKEKRNADKLKRLENIVIPRGFNFDVLASLSHEAKEKLNKIRPDTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G+ P+ +++LL+ + +
Sbjct: 601 AQASRISGINPSDISVLLVSMGR 623


>gi|206901392|ref|YP_002250834.1| glucose-inhibited division protein A [Dictyoglomus thermophilum
           H-6-12]
 gi|206740495|gb|ACI19553.1| glucose-inhibited division protein A [Dictyoglomus thermophilum
           H-6-12]
          Length = 619

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/613 (43%), Positives = 368/613 (60%), Gaps = 3/613 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIV+GGGHAGCEAA  AA+LG    LIT    T+G + CNPA+GG GKGHL+ EID
Sbjct: 2   ERYDVIVVGGGHAGCEAAYAAARLGVKVLLITMNYDTVGWLPCNPAMGGPGKGHLIMEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GL GR+ + + IQ ++LN  KGPAVR  R Q D+ +Y   M+  + S +NL+V QGE
Sbjct: 62  ALGGLTGRITNRSMIQVKMLNTSKGPAVRALRAQVDKWVYPAKMREFLESIKNLEVYQGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E + +  +++          VV+T GTF+ GVIHI     PAGRM + PS  L 
Sbjct: 122 VVDLIVENDEVKGVILSTKKEFYAERVVITPGTFMNGVIHISTWSKPAGRMNEFPSVGLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +   + GR  TGT  R+D +TI + KT  Q  DE L  FSF  +     Q+   +T
Sbjct: 182 DALRRLGLEVGRFNTGTTPRVDKRTIDFSKTVIQPGDEELHSFSFWEEPEPRDQVPSYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT  +T  I++ NI  +A   G +   GPRYCPSIE+K V F     HQ+FLEPEG N+ 
Sbjct: 242 RTTQKTKEIVLANIHLTASRIGGMVKKGPRYCPSIEEKYVWFPHHETHQVFLEPEGRNSV 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  GI T+LPE+IQ Q +R+IPGLE+V +IRPGYAI YD + P +L  TLETKKI GL
Sbjct: 302 EIYVQGIYTSLPEDIQIQILRSIPGLEEVELIRPGYAIAYDIVYPHQLKLTLETKKIKGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGL+AG N+A      + +   R + YIGV+IDDL +KGV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLIAGANAALSLLGKEPLIIRRDEGYIGVLIDDLVTKGVDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYRI LR DNAD RLTP   KLG I E   K F + +++  + +  L+ L +
Sbjct: 422 YRILTSRAEYRILLRSDNADQRLTPKAYKLGLISEDMWKMFQEKMEKIKYEKRRLEKLSV 481

Query: 484 TSKNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             +N++   +        +     + +  P+ + ++L  +            E ++ +  
Sbjct: 482 QPENINYILLDKGTNPITQPVPLIQIIKRPEITYEDLEKVGLS-GDLPKKWREIVETDIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +++ + KE +  E   IP+D +Y  +P LS E +EKL  ++P    QA +I G+
Sbjct: 541 YEGYIKKELDKVKEFQEYENLQIPEDINYGEIPHLSREGREKLEKIRPSTFGQAMRISGV 600

Query: 602 TPAALNLLLIYIK 614
               L +LL Y++
Sbjct: 601 NAGDLTILLYYLR 613


>gi|124026850|ref|YP_001015965.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. NATL1A]
 gi|166222716|sp|A2C5E1|MNMG_PROM1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123961918|gb|ABM76701.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           NATL1A]
          Length = 656

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/638 (43%), Positives = 379/638 (59%), Gaps = 20/638 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIV+GGGHAGCEAA  +A+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVVGGGHAGCEAALTSARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   +Q RVLN  +GPAVR  R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGIIGKLADLTALQKRVLNASRGPAVRALRAQTDKRSYAHEMLKILQNTPNLKIREA 127

Query: 123 EVAGFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   E                   I  I     S+     VVLTTGTFL G I IG 
Sbjct: 128 MVTGLEIEHYPNQIDQKTPEIQERIGFIKGIKTYFGSVFHAKAVVLTTGTFLGGRIWIGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  S  L     K  F T RLKTGTPAR+D +TI  D  ++Q +D     F
Sbjct: 188 QSMSAGRAGEQASEGLTEELKKLGFTTDRLKTGTPARVDRRTIDLDSLDEQLSDASDKFF 247

Query: 227 SFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF      +  Q+ C ITRT  ETH++I  N+  + IY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPLSWKSGEQMSCHITRTTKETHQLIKNNLHLTPIYGGFIDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGL+   ++RP YA+EYDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEMYVQGFSTGLPENLQLELLRTLPGLQNCVMLRPAYAVEYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           I   +L  TLETK+ISGL+ AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  + I F R  
Sbjct: 368 IPATQLEATLETKRISGLYSAGQLNGTTGYEEAAAQGLVAGLNAARLVNNKEGIIFERES 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I ERR   F 
Sbjct: 428 SYIGTMIDDLVTKDLKEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDERRWNIFN 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
              Q  N  +  L    +   +  +  I   +      + T   FL   +   ++L +  
Sbjct: 488 AKQQLINQEKERLDKERIKESDKCAKEIFSSTGTPIKGSLTLANFLRRTNIHYKDLITYN 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              +     V E ++I+  Y+ Y  RQ  +  ++K + K+L+PK+ +Y+++  LS E +E
Sbjct: 548 LTTQSIPLDVEEAVEIDIKYSGYLERQKAQINQLKQQSKKLLPKNLNYNNIETLSKEARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           KL+I +P +L  A+++ G++ A L  LL+++K   +K 
Sbjct: 608 KLTISQPKSLGHAAQVPGVSKADLTALLVWLKIEKMKK 645


>gi|88809508|ref|ZP_01125016.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
 gi|88786727|gb|EAR17886.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
          Length = 659

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/637 (42%), Positives = 376/637 (59%), Gaps = 20/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA  AA+LG +TAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITAARLGLNTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R+LN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   E +                 I+ +     S      VVLT GTFL G I +G 
Sbjct: 128 MVTGLEIEGDASGGGESWDPSQGPAARITGVRTYFGSTYEAKAVVLTAGTFLGGRIWVGH 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  +  L ++  +  F T RLKTGTPAR+D ++I  D+ ++Q +D     F
Sbjct: 188 QSMAAGRAGEQAAEGLTDALQQLGFHTDRLKTGTPARVDRRSIALDQLDEQPSDAADRFF 247

Query: 227 SFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF     ++  Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPAAWVSGEQMSCHITRTTAATHQLIKDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +LFP+LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+      + F R  
Sbjct: 368 LPATQLFPSLETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQSAVHFPREG 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F 
Sbjct: 428 SYIGTMIDDLVSKDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQMFE 487

Query: 466 KYIQEYNFLRSLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
           + +      +  L++  L        +  + +      + T  + L  P     +L    
Sbjct: 488 QKLTALESEKQRLETQRLKVSDPVAPAVEAQTGASIKGSITLADLLRRPGMHADDLVHHG 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    V E  +I+  Y+ Y  RQ  +  ++K + +R +P   DY+ +  LS E +E
Sbjct: 548 LADADLPLPVREGAEIDIKYSGYLQRQQQQIDQVKRQSRRKLPASIDYAKISTLSREARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+ ++P  L QAS+I G++ A L  LL++++    +
Sbjct: 608 KLTAVRPITLGQASQIPGVSQADLTALLMWLELQQRR 644


>gi|213963856|ref|ZP_03392104.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sputigena Capno]
 gi|213953536|gb|EEB64870.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sputigena Capno]
          Length = 623

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 374/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGAQTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR+G+  + 
Sbjct: 121 QGMVNDLLIEKDRVVGVRTSLGVTIKAKSVVLTNGTFLNGVMHIGLKQFGGGRVGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF ++ K    Q +
Sbjct: 181 GLTECLVQHGFEAGRMKTGTPPRVDARSLDFTKMVPQPGDEHPQKFSFSSETKPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF ++  HQIF+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKERHQIFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV  +RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFLRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AGIN+  K  + +     R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGINAVLKVREREPFILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD+RLTP+G ++G + E R + +    ++ N   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADSRLTPLGYEIGTVSEERYRAWETKNRKVNEFITYIK 480

Query: 480 SLVLTSKNLSSTSISF--KQDGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLV 532
            L +T   ++     +      +     + LS PD ++ +  SI            +   
Sbjct: 481 ELSVTPDEVNPILEKYDSSPMKQGDKLQKVLSRPDVTLADFESIDRIASYIKENDLNEEE 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
               ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL  ++P  L
Sbjct: 541 KTCAEVEVKYAGYIEKERNNADKLNRLESVRIPDNFDYDKIISLSFEGREKLKKIRPTTL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++LLIY+ +
Sbjct: 601 SQASRISGVSPADISILLIYMGR 623


>gi|33241285|ref|NP_876227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|81170569|sp|Q7V9J7|MNMG_PROMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33238815|gb|AAQ00880.1| NAD/FAD-utilizing enzyme apparently [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 667

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/637 (42%), Positives = 372/637 (58%), Gaps = 20/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   KEKFDVIVVGGGHAGCEAAIATAKLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+AD+  +Q R+LN  +GPAV   R Q D+  Y + M + +    NL + + 
Sbjct: 68  DALGGVIGRLADSTALQKRILNASRGPAVWALRAQTDKRQYSIEMLQMLQETPNLSLREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V     + +                 +  I     S+     V+LTTGTFL+G I IG 
Sbjct: 128 MVTDLEIKSSPNRKKIKEQSEEKTIGQVQGIKTYFGSIYLAKAVILTTGTFLKGKIWIGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             + AGR G+  +  L  +  K  F+T RLKTGTP R+D +TI     E+Q +D     F
Sbjct: 188 QSMDAGRAGEQAATGLTEALQKLGFETSRLKTGTPPRVDRRTIDLGSLEEQKSDAADRFF 247

Query: 227 SFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF  ++  + +Q+ C +TRT  +TH++I  N+  + IY G I S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPERWKSGQQMSCYMTRTTQKTHQLIKNNLHLTPIYGGFINSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            ++  HQIFLEPEG NT  +Y  G+ST LPE +Q Q +RT+PGL+   ++RP YA+EYDY
Sbjct: 308 SDKESHQIFLEPEGRNTPEIYIQGLSTGLPEGMQLQLLRTLPGLKNCVMLRPAYAVEYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +L  +LETKKI GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR  N  D I F R +
Sbjct: 368 LPATQLLASLETKKIEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARYVNNQDAIIFPREE 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL  K + EPYR+ TSR+EYR+ LR DNAD RLTP+G K+G + + +   F 
Sbjct: 428 SYIGTMIDDLIKKDLREPYRVLTSRSEYRLILRGDNADRRLTPLGYKVGLVNDYQWNIFQ 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSIC 522
                    +  L+   +   +  +  I  +       + T    L  P   + NL    
Sbjct: 488 IKQSNMEKEKKRLEQQRIKDSDPIALKIEKESGASIKGSITLANLLRRPGMHMNNLIRHK 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                    V E ++I+  Y+ Y  RQ ++ ++IK + KR +P + +Y+++  LS E +E
Sbjct: 548 LANNSLPLDVREGVEIDIKYSGYLKRQNLQIEQIKKQNKRALPSEVNYTNIKTLSQEARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+  +P    +AS++ G++ A L+ LLI++K    K
Sbjct: 608 KLNATQPKTFGEASQLPGVSKADLSALLIWLKIQNRK 644


>gi|292571653|gb|ADE29568.1| Glucose-inhibited divisionprotein A [Rickettsia prowazekii Rp22]
          Length = 621

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/610 (51%), Positives = 424/610 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D +GI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++  +V
Sbjct: 63  LDGLMGFVIDKSGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYAKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + + ++++ + S I C  VVLTTGTFL G IHIG +K+PAGR+ + PS  L N
Sbjct: 123 EDIQIKSSKVEAVILSNGSKIFCQKVVLTTGTFLSGFIHIGSIKMPAGRIYEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+
Sbjct: 183 TLKRLGFKIARLKTGTPPRIDGRTIDYSKTALQQGDQIPRPFSELTDVIDVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEEVQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINVTLETKKITGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R  SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALSVKDQAPFILTRATSYIGVMIDDLTTFGTVEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +G+K+G I E+R+K F K  +     + LL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGIKIGVITEKRKKFFTKKCKNIEKTKLLLNNLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  L+   I   QDGK +T  +    P F+++    I P  +K ++ +++ L IE+ YA+
Sbjct: 483 TSKLAKMGIQVAQDGKYKTILDLFKIPSFNVEQAIKIFPILKKQNNNILQLLYIEAKYAS 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 543 YLTRQYADINLFQSEELQLIPKNIDYFKIPSISLEIQEKLSYHKPATIGVARRISGITPA 602

Query: 605 ALNLLLIYIK 614
           ++  ++IY+K
Sbjct: 603 SITAIIIYLK 612


>gi|325954631|ref|YP_004238291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Weeksella virosa DSM 16922]
 gi|323437249|gb|ADX67713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Weeksella virosa DSM 16922]
          Length = 623

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/622 (43%), Positives = 378/622 (60%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   SYDVIV+GGGHAG EAAA AA +G  T LIT     I  MSCNPA+GG+ KG ++R
Sbjct: 2   IFQSSYDVIVVGGGHAGAEAAAAAANMGCKTLLITMNLQNIAQMSCNPAMGGIAKGQIIR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D   IQF++LN+ KGPA+  PR Q+DR  +    +  +   EN+D  
Sbjct: 62  EIDALGGYSGIITDKTMIQFKMLNLSKGPAMWSPRAQSDRMRFAEEWRLALEKTENIDFF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +   +  ++      IR   V+LT GTFL G+IH+G+ +   GRMG+  + 
Sbjct: 122 QDMVKNLVVKNRKVEGVITNMGLEIRSKAVILTNGTFLNGLIHVGEKQFGGGRMGEGAAF 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    ++  FD GR+KTGTP R+DG+++ + K  +Q  DE    FS+       +Q  C
Sbjct: 182 GITEQLIELGFDAGRMKTGTPPRIDGRSLDFSKMMEQPGDENPGKFSYTETPKLTKQRSC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ TN E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQIF EPEG 
Sbjct: 242 YISYTNQEVHDLLREGFDRSPMFNGTIKSIGPRYCPSIEDKINRFADKDRHQIFAEPEGW 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT   Y NG ST+LP E+Q + IR+IPG EK    RPGYAIEYDY  P +L  TLETK +
Sbjct: 302 NTIEYYINGFSTSLPMEVQGKAIRSIPGFEKAKFFRPGYAIEYDYFPPTQLKHTLETKLV 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL +KGV
Sbjct: 362 DNLYFAGQINGTTGYEEAASQGLIAGINAALKLQEKDPFILKRNEAYIGVLIDDLITKGV 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLTPIG +LG   ERR KR  +   + +   + L++
Sbjct: 422 DEPYRMFTSRAEYRILLRQDNADERLTPIGYQLGLASERRMKRVEEKYSKAHAFINYLEN 481

Query: 481 LVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVI 533
             +T K ++ T    K     +       ++ P+  + +  +I       +  +     +
Sbjct: 482 ESVTPKQINPTIEERKGTPLKQANKMAAVIARPELKLNDFLTIEKIASYVEKNQLGDEEL 541

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I+  Y  Y  ++   A ++   E   IP + DY  L +++ E ++KLS ++P  + 
Sbjct: 542 EEAEIQIKYRGYIKKEKNNADKLTRLENLKIPANIDYHQLNSMTIEARQKLSKIRPETVA 601

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++PA +++LLI++ +
Sbjct: 602 QASRISGISPADISVLLIHMGR 623


>gi|89052691|ref|YP_508142.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jannaschia sp. CCS1]
 gi|122499792|sp|Q28VZ5|MNMG_JANSC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88862240|gb|ABD53117.1| glucose inhibited division protein A [Jannaschia sp. CCS1]
          Length = 624

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/616 (52%), Positives = 416/616 (67%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R +DVIV+GGGHAG EAA  A + GA TAL+T +   +G MSCNPAIGGLGKGHLVREI
Sbjct: 6   HRHFDVIVVGGGHAGVEAADAACRAGARTALVTLRKDDLGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+ G+MG  ADA+GIQ+R+LN KKG AV+GPRTQ+DR LY+ A+Q  + +   L VI+G
Sbjct: 66  DAMGGVMGCAADASGIQYRLLNRKKGAAVQGPRTQSDRALYKSAIQDHMRNVTELTVIEG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EVA    E   +  +   D   I   +VVLTTGTFLRGVIHIG      GR G + +  L
Sbjct: 126 EVADVIVESETVCGVSFTDGQSISARSVVLTTGTFLRGVIHIGHETRSGGRFGANRAIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                  +   GRLKTGTP RL  K+I W+  + Q +D+    FSF+T ++  RQI CGI
Sbjct: 186 AERLSAMNLPVGRLKTGTPPRLAAKSINWEALDHQPSDDDPTFFSFLTKRVRARQIACGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N+  SA+Y G+I S GPRYCPSIEDK+VRF ++  HQIFLEPEGL +
Sbjct: 246 THTNPHTHDIIEQNLGRSAMYGGNIDSVGPRYCPSIEDKVVRFADKVSHQIFLEPEGLTS 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VYPNGIST+LP ++Q  ++ +I GLE  +I++PGYAIEYDYI+P  L   LE +   G
Sbjct: 306 ETVYPNGISTSLPIDVQLDYVHSIKGLEHADILQPGYAIEYDYIDPTCLNNRLELQDHPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQGLVAG+N+A  +   D + FSR +SYIGV++DDL ++GV E
Sbjct: 366 LFLAGQINGTTGYEEAAAQGLVAGLNAAFHAQDRDPLTFSRRESYIGVLVDDLVTRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+SLR DNAD RLTPI   L  + E R   F   ++  +    +L  LV
Sbjct: 426 PYRMFTSRAEYRLSLRADNADQRLTPIAADLDLLTEERTSEFTAKMERLSRGYDILNDLV 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +TSK  ++  +S   DGK RT  E L++P   + ++  + P   +      ++L+IE+ Y
Sbjct: 486 VTSKQAAAAGMSVNADGKKRTGAELLAFPSVELSDIAQLEPAVGQIDPATAKQLKIEAIY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +A  +K +E + IP DF YSS+  LSNEL+ KL   +P  L QAS+I+GMT
Sbjct: 546 AVYIERQNQDAFALKRDEAKSIPADFPYSSVVGLSNELRMKLIKTRPSTLAQASRIDGMT 605

Query: 603 PAALNLLLIYIKKNTV 618
           PAAL L+L  I++   
Sbjct: 606 PAALALILTKIRQTQR 621


>gi|283850202|ref|ZP_06367491.1| glucose inhibited division protein A [Desulfovibrio sp. FW1012B]
 gi|283574228|gb|EFC22199.1| glucose inhibited division protein A [Desulfovibrio sp. FW1012B]
          Length = 618

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/615 (45%), Positives = 368/615 (59%), Gaps = 3/615 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+I++G GHAGCEAA  AA+LG  T L+T     IG +SCNPAIGGL KGH+VREIDAL
Sbjct: 3   FDLIIVGAGHAGCEAAMAAARLGLGTLLLTQNVDRIGHLSCNPAIGGLAKGHMVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG  ADAAGIQFR LN +KGPAVR  R Q DR+ Y   ++R+I +QE L V Q  V 
Sbjct: 63  GGMMGLWADAAGIQFRTLNTRKGPAVRATRAQIDRDAYLRVVRRDIFAQEGLLVRQDTVE 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E    S +            V+LTTGTFL G+IHIG  ++  GR+GD PS+ L  S
Sbjct: 123 AIVAEDGRASGVRTGSGETFAARAVLLTTGTFLGGLIHIGLTQLRGGRLGDPPSDGLSAS 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGT  RL  K+I +  T  Q  D     FSF       RQ+ C +T T
Sbjct: 183 LREHGLILGRLKTGTTPRLLAKSIDFAATTPQPGDHPPPAFSFHGPGPVLRQVPCHLTYT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH  I      S +++G I+  G RYCPS+EDK+ RF ER+ H +FLEPEGL++  +
Sbjct: 243 NERTHEAIRAGFDRSPLFTGVIEGTGARYCPSVEDKVARFPERDRHHVFLEPEGLDSPEI 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIST+LP E+Q   I TIPGLE+ +I+RPGYAIEYDY +P +L PTLETK + GLFL
Sbjct: 303 YPNGISTSLPIEVQKALIATIPGLEQAHIVRPGYAIEYDYADPVQLLPTLETKALPGLFL 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGL A +N              R  +Y+ V++DDL +KG  EPYR
Sbjct: 363 AGQINGTSGYEEAAAQGLWAALNIFCARKGRPPFLPRRDQAYMAVLVDDLVTKGTTEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR  NAD RLTP+G +LG +G+R+ + + +  +    +   L    +  
Sbjct: 423 MFTSRAEHRLLLREGNADARLTPLGRELGLVGDRQWELYRRKEESLAAVIEGLCGRRVRP 482

Query: 486 ---KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
               + + T++  + + ++    E L  P+ ++ +L    P+       V    +    Y
Sbjct: 483 DDCDDAAWTALGGRPEDRSLRLDELLRRPEVTLPDLGRFWPELAALPPEVAVEAETRVKY 542

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ   A  +   E  ++P D DY  +  LS E+ EKL  + P  L QA +I G+T
Sbjct: 543 EGYLRRQGELAGRMGRLEAMVLPPDLDYGLVSGLSREVVEKLGRVAPLTLGQAGRISGVT 602

Query: 603 PAALNLLLIYIKKNT 617
           PAAL  L I++KK  
Sbjct: 603 PAALACLEIHLKKRE 617


>gi|195436196|ref|XP_002066055.1| GK22159 [Drosophila willistoni]
 gi|194162140|gb|EDW77041.1| GK22159 [Drosophila willistoni]
          Length = 656

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/630 (45%), Positives = 407/630 (64%), Gaps = 17/630 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI+IGGGHAG EA++ AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 29  YDVIIIGGGHAGTEASSAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ + +NL++    V 
Sbjct: 89  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQKELGNTKNLEISAAAVD 148

Query: 126 GFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               E +     +++ +   +R  +VVLTTGTFLR  I+IG    PAGR+GD P+ +L  
Sbjct: 149 NLIVEDDKHCKGVLLANGEEVRSHSVVLTTGTFLRAHINIGLEVRPAGRIGDKPAQALGE 208

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECG 241
           +  +  F  GRLKTGTP R+   +I + + ++   D    PFSF+  K+    + QI C 
Sbjct: 209 AIDRLGFRMGRLKTGTPPRIAKDSINFSQLQRHDGDNPPNPFSFLNKKVWLNADEQIPCY 268

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFGE+  HQ++LEPEG +
Sbjct: 269 LTYTTPKVSNIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGEK-VHQVWLEPEGFD 325

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             ++YP GIS  LP E Q + +  I GLEK  +++PGY +EYDYI+P+EL+PTLETK++S
Sbjct: 326 NPLIYPQGISCTLPFEQQIELVHAIKGLEKAEVVQPGYGVEYDYIDPRELYPTLETKRVS 385

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARK---SNKLDCICFSRTDSYIGVMIDDLTSK 418
           GLF AGQINGTTGYEEAAAQG+VAG N+A K    N    +  SRT+ YIGV+IDDLTS 
Sbjct: 386 GLFFAGQINGTTGYEEAAAQGIVAGANAAGKTLHQNDGKQLTISRTEGYIGVLIDDLTSL 445

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAE+R+SLRPDNAD RLT  G   G + E+R + F +   +       L
Sbjct: 446 GTNEPYRMFTSRAEFRLSLRPDNADMRLTRKGYDFGLVSEQRYRHFQQTFDKIQAGIEAL 505

Query: 479 KSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDA---RKFSSLV 532
           K+L   S    SS  +   +    +TA+E L  P  + +++ L  +CP            
Sbjct: 506 KNLKKHSNFWRSSLGLPTAKASVEKTAFEMLGIPADNITVEQLLQLCPGELSWPDCDKAS 565

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPFN 591
            ER++IE+ Y+ +   Q  +  E++ EE+  IP D DY S   +LSNE ++KL++++P  
Sbjct: 566 SERIKIEALYSFFVAEQQRDVDEVRREERLAIPSDIDYFSKTLSLSNEERQKLALIQPLT 625

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +  AS+I+G+TP+ +  L+ Y+K+  +  +
Sbjct: 626 IAAASRIQGVTPSTIVRLMKYVKRTEIAAS 655


>gi|15603935|ref|NP_220450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rickettsia prowazekii str. Madrid E]
 gi|6225445|sp|Q9ZE90|MNMG_RICPR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3860626|emb|CAA14527.1| GLUCOSE INHIBITED DIVISION PROTEIN A (gidA) [Rickettsia prowazekii]
          Length = 621

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/610 (51%), Positives = 424/610 (69%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGGHAG EAAA +A+LG  T LIT K   +G MSCNPAIGG+ KG LV+EIDA
Sbjct: 3   KYGVIIIGGGHAGVEAAAASARLGVHTLLITLKPENLGEMSCNPAIGGIAKGTLVKEIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG V D +GI +++LN  +GPAV GPR QADR+LY+  M + + +  NLD++  +V
Sbjct: 63  LDGLMGFVIDKSGIHYKMLNETRGPAVWGPRAQADRKLYKKVMYQILTNYRNLDILYAKV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + + + ++++ + S I C  VVLTTGTFL G IHIG +K+PAGR+ + PS  L N
Sbjct: 123 EDIQIKSSKVEAVILSNGSKIFCQKVVLTTGTFLSGFIHIGSIKMPAGRIYEEPSYGLSN 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   RLKTGTP R+DG+TI + KT  Q  D+   PFS +TD I   QI C IT+
Sbjct: 183 TLKRLGFKIARLKTGTPPRIDGRTIDYSKTALQQGDQIPRPFSELTDVIDVPQINCFITK 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETH II EN+  SA+YSG I+  GPRYCPSIEDKIV+F  +  H+IFLEPEGL    
Sbjct: 243 TTSETHDIIRENLDKSAMYSGQIEGIGPRYCPSIEDKIVKFSTKLEHRIFLEPEGLEDYT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LPEE+Q++ I+TIPGLE   ++RPGYAIEYDY++P+E+  TLETKKI+GL+
Sbjct: 303 IYPNGISTSLPEEVQYKLIKTIPGLENAQVLRPGYAIEYDYVDPREINVTLETKKITGLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAA QG++AGIN+A           +R  SYIGVMIDDLT+ G +EPY
Sbjct: 363 FAGQINGTTGYEEAAGQGIIAGINAALSVKDQAPFILTRATSYIGVMIDDLTTFGTVEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLT +G+K+G I E+R+K F K  +     + LL +L LT
Sbjct: 423 RMFTSRSEYRLSLRADNADLRLTELGIKIGVITEKRKKFFTKKCKNIEKTKLLLNNLSLT 482

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
           +  L+   I   QDGK +T  +    P F+++    I P  +K ++ +++ L IE+ YA+
Sbjct: 483 TSKLAKMGIQVAQDGKYKTILDLFKIPSFNVEQAIKIFPILKKQNNNILQLLYIEAKYAS 542

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  +    + EE +LIPK+ DY  +P++S E++EKLS  KP  +  A +I G+TPA
Sbjct: 543 YLTRQYADINLFQSEEIQLIPKNIDYFKIPSISLEIQEKLSYHKPATIGVARRISGITPA 602

Query: 605 ALNLLLIYIK 614
           ++  ++IY+K
Sbjct: 603 SITAIIIYLK 612


>gi|15835399|ref|NP_297158.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Nigg]
 gi|270285578|ref|ZP_06194972.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Nigg]
 gi|270289588|ref|ZP_06195890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum Weiss]
 gi|301336974|ref|ZP_07225176.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlamydia muridarum MopnTet14]
 gi|13626938|sp|Q9PJP3|MNMG_CHLMU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|7190812|gb|AAF39588.1| glucose inhibited division protein A [Chlamydia muridarum Nigg]
          Length = 610

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/614 (44%), Positives = 369/614 (60%), Gaps = 16/614 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAGCEAA  AAK+GAS  L+T    TI  +SCNPA+GG+GKGH+VREIDA
Sbjct: 7   EYDVIVIGAGHAGCEAAYCAAKMGASVLLLTSNLDTIAKLSCNPAVGGIGKGHIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+M  V D +GIQFR+LN  KGPAVR PR Q D++LY + M++ +     L ++QG  
Sbjct: 67  LGGVMAEVTDLSGIQFRILNQTKGPAVRAPRAQVDKQLYHIHMKQLLEQVPGLHIMQGTA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +  ++       TVVL++GTF+RG+IHIG      GR+GD+ S  L  
Sbjct: 127 EALLDDGEKVLGVSTKEGWAYSGETVVLSSGTFMRGLIHIGTQNFSGGRLGDAASLGLSK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
              +  F  GRLKTGTPARL   +I +   E+Q  D + + F    +       Q+ C I
Sbjct: 187 DLKRLGFPLGRLKTGTPARLLSSSIDFSIMEEQPGD-QNVCFVHREEAFVPKLPQVSCHI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  +T  +I  N+  SA+Y G I+  GPRYCPSIEDKIV+F +++ H IF+EPEGLNT
Sbjct: 246 TYTTDKTKDLIANNLHRSALYGGRIEGVGPRYCPSIEDKIVKFADKDRHHIFIEPEGLNT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY NG+ST++P ++Q++ IR++ GLE   I RP YAIEYDYI    + P+LE+K + G
Sbjct: 306 REVYVNGLSTSMPFDVQYEIIRSVAGLENAVITRPAYAIEYDYIQGNVILPSLESKILEG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFL GQINGTTGYEEAAAQGL+AG+N+  K         SR +SYIGVM+DDLT++ + E
Sbjct: 366 LFLCGQINGTTGYEEAAAQGLIAGVNAVNKVLHRPAFIPSRQESYIGVMLDDLTTQVLDE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+ LR DNA  RL+  G  LG +   R   F K        +  L    
Sbjct: 426 PYRMFTSRAEHRLLLRQDNAGMRLSHYGHALGLLSSERYAMFQKQKNCIEHEKERLAKTF 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESS 541
                        K         + L  P+ S Q L +  P D + +  ++   L++E  
Sbjct: 486 ------------RKYGDSIVPLTKILCRPEVSYQQLLTEFPEDVKDWGPIIGASLEMEIK 533

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ    + ++  E  LIP+  DY S+ ALS E +EKLS   P  +  A++I G+
Sbjct: 534 YSGYISRQQTLIRSMEKAENTLIPEGIDYHSISALSLEAREKLSKFTPRTIGSAARISGI 593

Query: 602 TPAALNLLLIYIKK 615
           + A + +L++ +KK
Sbjct: 594 SVADIQVLMVSLKK 607


>gi|293399749|ref|ZP_06643895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306149|gb|EFE47392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 624

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/618 (41%), Positives = 373/618 (60%), Gaps = 7/618 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L   T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLQKETILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ+ +L+QE+L+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLAYKAYMQKVLLAQEHLEVREMCVEK 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E  ++  ++  D  M  C  +++TTGTF+   I +G    P+G  G+  +N+L  S 
Sbjct: 123 VIAEDGVVKGVLQADGHMEECKALIMTTGTFMSSNILVGHTSTPSGPDGEPTTNNLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITR 244
                 T RLKTGTPAR+   +I + KTE Q   +  + FS  T  I     Q  C +T 
Sbjct: 183 RDLGIRTFRLKTGTPARVLTSSIDFSKTEVQPGTDAFLCFSHETTNIRPFKEQALCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHRII EN++ SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TSPETHRIINENLERSAMYSGLVKGVGPRYCPSIEDKLVRFADKQRHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++PGLE   I +  YAIEYD I+P +  PTLE K+I+ L+
Sbjct: 303 TYVQGFSTSMPHDVQEAMLHSLPGLENCVIKKYAYAIEYDAIDPLQCKPTLENKRIANLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+  K +  +     R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLLAGINAVLKLDGKEPFILRRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLTP G  +G I + R + F    Q+       L ++  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADLRLTPYGHTIGLISDARYENFKGKEQQIIDCLEYLDTVRFT 482

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K+  +T    + ++   +  +A   L  P  +++ L       + F+  + ++++IE  
Sbjct: 483 PKSTVNTYMQELDYEPLKEGISAKTLLKRPKVTMEGLAPYLE--KTFAPAIAQQVEIEIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   +A  ++  +   +P+  DY  +  LS E ++KL+ ++P  + QAS+I G+
Sbjct: 541 YEGYIQKAKRDAAHLRQMDAVRLPEHIDYQQIQHLSLEARQKLNEVQPMTMGQASRISGV 600

Query: 602 TPAALNLLLIYIKKNTVK 619
            PA + +L +Y+++   +
Sbjct: 601 NPADIAVLAVYLEQLKRE 618


>gi|167753844|ref|ZP_02425971.1| hypothetical protein ALIPUT_02129 [Alistipes putredinis DSM 17216]
 gi|167658469|gb|EDS02599.1| hypothetical protein ALIPUT_02129 [Alistipes putredinis DSM 17216]
          Length = 630

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 375/623 (60%), Gaps = 16/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IV+GGGHAGCEAA+ AA+LG+ T L+T   + +  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   HYDIIVVGGGHAGCEAASAAARLGSRTLLVTMDMTKLADMSCNPAVGGVAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D   +QFR+LN  KG A+  PR Q D+  +    +R + +  NL + Q   
Sbjct: 64  LGGQMGRITDLTAVQFRMLNRSKGAAMWSPRAQCDKSRFSAEWRRTLENTPNLYLWQDTA 123

Query: 125 AGFN-------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        +  +  I  Q         V+LT GTFL GV++ G+     GR GDS
Sbjct: 124 VELLFGQRPAEEGRPQVRGIRTQMGVEFSADCVILTAGTFLAGVMYCGRSHAEGGRAGDS 183

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNR 236
            S+ +  S +   F+ GR+KTGTPARLD +TI ++  E Q+ DE    FSF  D      
Sbjct: 184 ASHGVTESLVAMGFEAGRMKTGTPARLDARTINFEILEPQYGDENPSKFSFSADTHPVQN 243

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +  T+ + H I+ +    S +++G I+  GPRYCPSIEDK+  F +++ HQ+FLE
Sbjct: 244 QLPCFLVYTSKKVHDILRKGFGDSPLFNGTIRGIGPRYCPSIEDKLNTFADKDQHQLFLE 303

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T+  Y NG S++LP +IQ + +  I G E ++I RPGYAIEYDY  P +L  +LE
Sbjct: 304 PEGRSTNEYYLNGFSSSLPWDIQWEALHAIEGFEDLHIFRPGYAIEYDYFLPTQLHHSLE 363

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK + GL+ AGQINGTTGYEEA AQG++AGIN+ R+    + +  +R ++YIGV+IDDL 
Sbjct: 364 TKLVDGLYFAGQINGTTGYEEAGAQGVMAGINAHRRRMGEEPLVLARDEAYIGVLIDDLV 423

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSRAEYRI LR DNAD RLTPIG K+G I ++R   F K  +    L +
Sbjct: 424 TKGVDEPYRMFTSRAEYRILLRQDNADIRLTPIGYKIGLISQKRYDSFCKKNRLVESLVA 483

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------ 528
             + L +    ++    S+      + R  ++ L   + +   L  + P    F      
Sbjct: 484 FARGLSVKPDEINDCLKSLGCDAISQGRKLHDLLMRNNVTFDLLSGVLPKLGDFLREQEM 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            + V+E  +I+  Y  Y  R+   A ++   E   IP DFD+ S+ AL+ E ++KL+ ++
Sbjct: 544 DAEVVEEAEIQIKYKGYIEREKFIADKLHRLENIRIPADFDFHSMNALTIEARQKLTRIR 603

Query: 589 PFNLLQASKIEGMTPAALNLLLI 611
           P  + QAS+I G++PA +N+LL+
Sbjct: 604 PATIGQASRIPGVSPADVNVLLV 626


>gi|87302071|ref|ZP_01084905.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
 gi|87283639|gb|EAQ75594.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
          Length = 662

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/620 (41%), Positives = 367/620 (59%), Gaps = 17/620 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + ++++IV+GGGHAGCEAA  AA+LG STAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   SETFELIVVGGGHAGCEAALTAARLGISTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATTLQKRVLNASRGPAVWALRAQTDKRQYARQMLQLLQHTPNLHLREA 127

Query: 123 EVAGFNTE-------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            V G   +                I+ +     S+     V+LTTGTFL G I +G   +
Sbjct: 128 MVTGLEVDLEGNGPNQVGNGAVGRITGVRTFFGSVYAAPAVILTTGTFLGGQIWVGNQSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  S  L  +     F T RLKTGTPAR+D +++  D+ E+Q +D     FSF 
Sbjct: 188 SAGRAGEQASEGLTEALQALGFHTDRLKTGTPARVDRRSVALDQLEEQPSDAEGRYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +++  + C +TRT   TH++I +N+  + IY G I S GPRYCPSIEDKIVRF ++
Sbjct: 248 PAAWVSSEPMACHLTRTTAATHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVRFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG +T  +Y  G ST LPE +Q + +RT+PGLE   ++RP YA+EYDY+  
Sbjct: 308 PSHQIFLEPEGRDTPELYIQGFSTGLPERLQLELLRTLPGLEHCVMLRPAYAVEYDYLPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +  P+L TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  SYI
Sbjct: 368 TQCLPSLMTKRVRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLLRGQEPVHFPREGSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G +IDDL +K + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR   F    
Sbjct: 428 GTLIDDLVTKDLHEPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWGLFEAKQ 487

Query: 469 QEYNFLRSLLKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
                 +  L+++ L         + + S      + T  + L    F  ++L  +    
Sbjct: 488 AAIAAEKQRLETVRLKVSDPVAPEAEARSGAPIKGSITLADLLRRSGFHSRDLVDLGLAD 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
               + V E  +I+  Y+ Y  RQ  +  +++ +++R IP   DYS++  LS E +EKL+
Sbjct: 548 ADLPAGVREGAEIDLKYSGYLARQQQQIDQVRKQDQRPIPGGIDYSAIATLSKEAREKLA 607

Query: 586 ILKPFNLLQASKIEGMTPAA 605
            ++P NL QAS+I G++PA 
Sbjct: 608 AVQPLNLGQASRIPGVSPAD 627


>gi|154148722|ref|YP_001406290.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter hominis ATCC BAA-381]
 gi|205831519|sp|A7I199|MNMG_CAMHC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|153804731|gb|ABS51738.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Campylobacter
           hominis ATCC BAA-381]
          Length = 640

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/639 (43%), Positives = 372/639 (58%), Gaps = 24/639 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IVIGGGHAG EA   AA++GA T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   QYDIIVIGGGHAGIEACLAAARMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   D AGIQFR LN  KGPAVRG R Q D + YR+ M+  +L+  NL++ Q   
Sbjct: 62  LGGQMGVCTDFAGIQFRTLNESKGPAVRGSRAQIDMDRYRIFMRNVLLNTSNLNISQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE + I+ +     ++   + +++TTGTFL G+IH+G+ K+ AGR+G+ PS  L  
Sbjct: 122 TEILTENDQITGVKTHLGNVYETNRLIITTGTFLNGLIHVGENKLSAGRVGEFPSIRLSQ 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD------------- 231
           S        GRLKTGT  R+D KTI +   E Q  D +  PFSF T              
Sbjct: 182 SLKNLGLKMGRLKTGTCPRVDAKTIDFSALELQNGDAQAHPFSFKTRFFANEIEKFTKNL 241

Query: 232 --------KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
                        QI C IT TN +TH II  N   + +++G I   GPRYCPSIEDKI 
Sbjct: 242 SKNFDENGNFNPTQIPCYITYTNEKTHEIIRNNFDRAPLFTGQIHGIGPRYCPSIEDKIN 301

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           +F +R+ H +F+EP+       Y NG+ST+LP ++Q +F+ ++ G E   I+R GYAIEY
Sbjct: 302 KFADRDRHHVFVEPQTAEASEYYLNGLSTSLPYDVQVEFLHSVKGFENAKIVRHGYAIEY 361

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           D++ P EL  +LETKKI+GL+LAGQINGTTGYEEAAAQGL+AGIN+A        +   R
Sbjct: 362 DFVEPTELKHSLETKKINGLYLAGQINGTTGYEEAAAQGLIAGINAALDIQNKAPLILRR 421

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            ++YIGV+IDDL +KG  EPYRMFTSRAE+R+ LR DNA  RL+  G  +G I +     
Sbjct: 422 DEAYIGVLIDDLVTKGTKEPYRMFTSRAEFRLLLREDNAIFRLSGYGHDIGLIKDYEFDE 481

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
            ++   +     + L + V+T    +     S+      +  T  + +   +FS + +  
Sbjct: 482 ISRRKAQIQKGINFLLNNVITPNKENLAKLKSLGADAISQNTTWQKIVGGKNFSAEKIRE 541

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           I      FS   +  +  E  Y  Y   Q  E  ++K      IP + D+S +  LSNE+
Sbjct: 542 IDSMFVDFSDDELSEILTECKYYFYIQMQKDEVAKMKNMLNTKIPTELDFSKISGLSNEI 601

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            EKL+   P  L  AS+I G+TPAA+++L IYIK+   K
Sbjct: 602 IEKLNKFNPPTLFAASEISGVTPAAIDILHIYIKQFKGK 640


>gi|56694929|ref|YP_165274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ruegeria pomeroyi DSS-3]
 gi|81170578|sp|Q5LWF3|MNMG_SILPO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56676666|gb|AAV93332.1| glucose inhibited division protein A [Ruegeria pomeroyi DSS-3]
          Length = 622

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/603 (53%), Positives = 428/603 (70%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D++VIG GHAG EAA  AA++G  TAL++     IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKHSDFDIVVIGAGHAGAEAAHAAARMGMRTALVSLSERDIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR+LYRLAMQ E+ ++  L ++
Sbjct: 61  EIDALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYRLAMQEEMRNRPGLTIV 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEV  F  + + ++ +V+ D S I    V+LT+GTFLRG+IHIG +  P GRMGD PS 
Sbjct: 121 EGEVTDFRMQGDRVAGVVLADGSEIASQAVILTSGTFLRGIIHIGDVSRPGGRMGDRPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L      F    GRLKTGTP RLDG+TI W   E+Q  D+  + FSF++     RQI C
Sbjct: 181 PLAERLDGFALPMGRLKTGTPPRLDGRTIDWSILERQDGDDDPVLFSFLSKGAYARQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT TN +TH II +N+  SA+Y G I+  GPRYCPSIEDKIVRF +++ HQIFLEPEGL
Sbjct: 241 GITHTNAQTHEIIRKNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VYPNGIST+LP ++Q  ++R+I GLE+V I++PGYAIEYDY++P+ L   L    +
Sbjct: 301 EDHTVYPNGISTSLPVDVQEDYVRSIRGLEQVEILQPGYAIEYDYVDPRALTSQLSLPNV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG+VAG+N+A      + + FSR +SYIGVMIDDLT++GV
Sbjct: 361 PGLYLAGQINGTTGYEEAAAQGMVAGLNAATAILGHEPVPFSRANSYIGVMIDDLTTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G++LGC+G+ R+  FA+  ++     +LL  
Sbjct: 421 AEPYRMFTSRAEFRLSLRADNADQRLTPLGLELGCVGDERRDVFARKAEKLATASALLDQ 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              + K +++  I+  QDG  R  +  L++PD    +L  + P+     +    +++ ++
Sbjct: 481 SSFSPKEIATAGITISQDGNRRNGFAVLAFPDVRFDDLVPLIPELADTDAETRAQVERDA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  + + +K +E  +IP DF++S+L  LSNELK+KL+  +P N+ QA ++EG
Sbjct: 541 LYANYIARQERDVEAMKRDEALVIPIDFNFSALDGLSNELKQKLTSARPENIAQAGRVEG 600

Query: 601 MTP 603
           MTP
Sbjct: 601 MTP 603


>gi|150020716|ref|YP_001306070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho melanesiensis BI429]
 gi|166224335|sp|A6LL84|MNMG_THEM4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149793237|gb|ABR30685.1| glucose inhibited division protein A [Thermosipho melanesiensis
           BI429]
          Length = 624

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/617 (42%), Positives = 362/617 (58%), Gaps = 9/617 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAG EAA   A+LG  T ++T     +G   CNPAIGG  KG +VREID 
Sbjct: 11  EFDVIVVGTGHAGIEAALAPARLGLRTLILTTNLDNVGWAPCNPAIGGPAKGIVVREIDV 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  D   I  R+LN  KGPAVR  R Q D+  Y   M+ ++ SQENL +  G V
Sbjct: 71  LGGEMAKTTDETMINVRMLNTGKGPAVRALRAQIDKYAYSQMMKNKLQSQENLVLRFGLV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +V       R   V+LTTGTFLRG I IG+  + AGRMGD P+  L  
Sbjct: 131 EKILVKDGKVYGVVDSFGIDYRAKAVILTTGTFLRGKIFIGRDTMEAGRMGDLPAKGLSK 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECGIT 243
           S M   F   R KTGTP+R+   +I + K  +Q  D+    FS F   K+  +   C +T
Sbjct: 191 SLMDIGFKLSRFKTGTPSRVLKSSINFSKMIRQDTDDEPRAFSHFSEPKVLPKDHPCWLT 250

Query: 244 RTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            TN +TH+II + + +S +Y     I+S GPRYCPSIEDK+V+F  R+ HQ+F+EPEG N
Sbjct: 251 HTNEKTHKIIRDYLVYSPLYGKVKLIQSVGPRYCPSIEDKVVKF-NRDSHQVFVEPEGKN 309

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +   Y NG+ST+LP   Q + +RTIPGLE V I+RP YAIEYDYI+P +L+ TLE+K I 
Sbjct: 310 SQEYYLNGLSTSLPYAAQIKMLRTIPGLENVVIVRPAYAIEYDYIDPLQLYQTLESKLIE 369

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEAA QGLVAGIN+A K      +   R++SYIG++IDDLT+KGV 
Sbjct: 370 GLYFAGQINGTSGYEEAAGQGLVAGINAAMKILGEKPLILKRSESYIGILIDDLTTKGVD 429

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     +        LK++
Sbjct: 430 EPYRLLTSRAEYRLLLRHDNAHIRLAKYGYRVGLIPKWFYEKVLNLEKNIKLQIERLKNV 489

Query: 482 VLT-SKNLSSTSISF--KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +  S  ++   +        +    Y  L  P+ S  ++  +  + R     ++E+++I
Sbjct: 490 KVPVSDRVNDILVKLGSTPLKEGTKLYNLLKRPEISYNDIEELDSE-RITDKELLEQIEI 548

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  + + E K  +  E   I K  +   +P LS E +EKL  + P ++ QA +I
Sbjct: 549 YIKYEGYIEKMLEEVKIFEEYESVDISK-INLDKVPNLSTEAREKLKKVMPRSIGQAMRI 607

Query: 599 EGMTPAALNLLLIYIKK 615
            G+TPA +  ++ YI+K
Sbjct: 608 PGVTPADIANIISYIEK 624


>gi|288573675|ref|ZP_06392032.1| glucose inhibited division protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569416|gb|EFC90973.1| glucose inhibited division protein A [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 626

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/622 (40%), Positives = 344/622 (55%), Gaps = 3/622 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAGCEAA VAA++G  T L+      I  M CNP+IGG  KGHLVR
Sbjct: 1   MTNKVYDVIVVGAGHAGCEAALVAARMGHDTLLLNLYLDNIALMPCNPSIGGPAKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EI AL G   R  D + +  R LN  KGPAVR  R Q D   Y    +  +     L++ 
Sbjct: 61  EISALGGEQARATDRSALMMRWLNTSKGPAVRALRAQCDLHDYHWHYREVLEHCPGLELH 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E + +  +           +V+LTTGT+L G +HIG +   +G +G  P++
Sbjct: 121 QDTVVGLIVEGDRVKGVETLYGLSYHARSVILTTGTYLDGRVHIGNVNFSSGPLGQIPAH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  + +K  F  GRLKTGT  R+   +I W + + Q  +E              R I C
Sbjct: 181 GLGENLLKLGFRMGRLKTGTTPRVHSDSIDWSELQIQEGEEEPQSMDLWDKPEVYRHITC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           G+ +TNL+THRII EN+  S + SG I   GPRYCPSIE K+++F +++ H +F EP   
Sbjct: 241 GVGKTNLDTHRIITENLDRSPVSSGTITGTGPRYCPSIESKVMQFPDKDSHTVFFEPVAR 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  +Y    ST+LP ++Q +  RT+PG  +  I+R GYAIEYDY++P +L P LETK I
Sbjct: 301 GSKEIYLQNFSTSLPYDVQIEMTRTLPGCREARIMRAGYAIEYDYMDPTQLTPWLETKAI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGT+GYEEAAAQGL+AGIN+  +      +   R ++YIGV+IDDL +KG 
Sbjct: 361 KGLFCAGQINGTSGYEEAAAQGLMAGINAVLRLRGEPYLVLGRHEAYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR E+R+ +R DNAD RL+ IG KLG + + R +   +  +  +     L S
Sbjct: 421 REPYRMLTSRCEHRLLMRHDNADRRLSGIGRKLGLLDDGRWEILVERWRNTDREIKRLGS 480

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +   +  +    SI      ++ T  E L  P      L    P        +  R++
Sbjct: 481 TRIKPSDDVNSDLASIGEAPMDRSLTGAELLRRPGVDYDFLSRYIPSGEDLEGHIRRRVE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +E  YA Y  RQ    K+ +  E   IP DFDY S+  L  E  EKL  ++P  L QA +
Sbjct: 541 VEIKYAGYVARQERSVKKFERMEALTIPDDFDYRSMKGLLAESLEKLERIRPKTLGQARR 600

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+TP  L LL + +     +
Sbjct: 601 ISGVTPTDLQLLSLALSVRRRR 622


>gi|313676468|ref|YP_004054464.1| glucose inhibited division protein a [Marivirga tractuosa DSM 4126]
 gi|312943166|gb|ADR22356.1| glucose inhibited division protein A [Marivirga tractuosa DSM 4126]
          Length = 621

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/597 (45%), Positives = 367/597 (61%), Gaps = 7/597 (1%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
            +G+   L T   +TI  MSCNPA+GG+ KG +VREIDAL G  G +AD + IQFR+LN 
Sbjct: 25  NMGSKVLLATMNMNTIAQMSCNPAVGGVAKGQIVREIDALGGYSGIIADKSMIQFRMLNK 84

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPA+  PRTQ DR  +    + ++    NLD  Q  VAG   E N +  I       I
Sbjct: 85  SKGPAMWSPRTQNDRMRFAEEWRLQLERIPNLDFWQEMVAGIIVENNKVVGIETSMGLKI 144

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           +   VVLT GTFL G+IHIG+ +   GR  +  S  +     +  F++GR+KTGTP R+D
Sbjct: 145 KAKAVVLTNGTFLNGLIHIGEKQFGGGRSAERASKGITEQLEELGFESGRMKTGTPPRVD 204

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           G+TI + K E+Q  DE    FSF  + KI +RQ  C IT TN   H I+ E  + S +++
Sbjct: 205 GRTIDYTKIEEQKGDEHPEKFSFSKETKILDRQRSCHITYTNPLVHEILEEGFEKSPMFN 264

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDKI RF ERN HQIF+EPEG +T  VY NG ST+LPE+IQH+ I+
Sbjct: 265 GRIQGLGPRYCPSIEDKINRFAERNRHQIFVEPEGWDTVEVYVNGFSTSLPEDIQHKAIK 324

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
            I G + V + RPGYAIEYD+  P +L  TLETK +  L+ AGQINGTTGYEEAA QGL+
Sbjct: 325 EIEGFKNVKMFRPGYAIEYDFFPPTQLKTTLETKLVENLYFAGQINGTTGYEEAACQGLM 384

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+  K N+ +    +R+++YIGV+IDDL +KG  EPYRMFTSRAE+RI LR DNAD 
Sbjct: 385 AGINAHLKINEKEPFVLTRSEAYIGVLIDDLINKGTDEPYRMFTSRAEHRILLRQDNADV 444

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSISFKQDGKTR 502
           RLTP+G ++G   + R K   +     +     LK+  +     N + + I+     +  
Sbjct: 445 RLTPLGHQIGLASDERMKYVEEKQLHIDAFIKNLKTHKVKPNIVNENLSKINSSPIKEKT 504

Query: 503 TAYEFLSYPDFSIQNLFSICPDARK----FSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
            AY  L  P+ S + L  I  +  +    +S  VIE  +I   Y +Y  ++    +++K 
Sbjct: 505 NAYSILKRPEISFKELQQIEDELNQMINGYSKEVIEASEIHIKYESYIQKENQMIEKMKN 564

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            E   I    DYS +PALS+E KEKL  +KP  L QAS+I G+TPA +++L++Y+ +
Sbjct: 565 LEDLKIKDSLDYSQIPALSSEAKEKLRKVKPQTLGQASRISGVTPADISILMVYLGR 621


>gi|257437745|ref|ZP_05613500.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium prausnitzii A2-165]
 gi|257199760|gb|EEU98044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Faecalibacterium prausnitzii A2-165]
          Length = 624

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/613 (44%), Positives = 367/613 (59%), Gaps = 4/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DA
Sbjct: 6   DYDVIVIGAGHAGIEAAHAAATLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q EV
Sbjct: 66  LGGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   E   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L  
Sbjct: 126 VGIEVENGHVKGVVTQLNGEYSAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER--LIPFSFMTDKITNRQIECGI 242
           S         R KTGTPAR+  ++I + K E Q  D    L PFSF+TD   + ++EC I
Sbjct: 186 SLKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPDSELQPFSFLTDAPMHNKVECWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT
Sbjct: 246 AYTNPETHRIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + G
Sbjct: 306 EEMYLQGASSSLPEDVQNAFYRSIQGFEHIEIMRPAYAIEYDCVDPTSLEATLESKVVRG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AG+N+AR +     +   R  SY+G ++DDL +KGV++
Sbjct: 366 LYGAGQFNGTSGYEEAAAQGLLAGLNAARSAKGESQLILERQTSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++          R  L    
Sbjct: 426 PYRMMTSRSEYRLTLRQDNADQRLTPIGREYGLVQDDRWAKYQHTQSILEAERRRLHETH 485

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L + +L +   +       +   A E L  P+ S   L  +       + ++ ERL+ E 
Sbjct: 486 LRTADLRAAMEAAGLTPAAEGGIAEELLRRPEISYPLLAGVIGWGEGITPMLAERLETEI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ    +++   EK LIP DF+Y+ L  L+ E +EKL+ ++P NL QA +I G
Sbjct: 546 KYAGYIARQDRMIRDVARHEKTLIPADFEYADLTGLTLEAREKLTRIRPKNLGQAGRIPG 605

Query: 601 MTPAALNLLLIYI 613
           ++P+ +  L I +
Sbjct: 606 VSPSDVAQLSIAL 618


>gi|294101019|ref|YP_003552877.1| glucose inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
 gi|293615999|gb|ADE56153.1| glucose inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
          Length = 632

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/625 (40%), Positives = 350/625 (56%), Gaps = 4/625 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGHAGCEA+  AA++GA T ++         M CNP+IGG  KGHLVR
Sbjct: 1   MEQKKYDVIVVGGGHAGCEASLAAARMGARTLMLNLYLDNTALMPCNPSIGGPAKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +AL G   R AD + +  R LN  KGPAV+  R Q D   Y       I +  NL+V 
Sbjct: 61  EGNALGGEQARAADYSTMLVRWLNTSKGPAVQALRAQCDLRDYHDHFIWTIETTPNLEVH 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   I  +  +         V+LTTGT+LRG +HIG L   +G MG  PS 
Sbjct: 121 QDIVTDLWIENGSIRGVKTKYGFTYEAGAVILTTGTYLRGQVHIGLLNYSSGPMGQVPST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S ++   + GR++T T  RL   TI      +Q + E  + F    +K T     C
Sbjct: 181 ELSRSLLESGIEMGRMRTDTTPRLHIDTIDTSSLIEQKSAEEPLCFDLWGEKKTYTGYSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRTN   H II EN++ S +++G +   GPRYCPSIEDKI+RF +++ H IFLEP   
Sbjct: 241 YLTRTNSYLHNIIRENLERSPLWTGRMSGLGPRYCPSIEDKIIRFPDKDSHLIFLEPVSR 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
               VY    ST+LP +IQ + +  +PG EK  I R GYAIEYDY+ P +L P+LETK I
Sbjct: 301 KNKEVYVQNFSTSLPYDIQVEIVHALPGCEKAQITRAGYAIEYDYVIPTQLAPSLETKNI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGT+GYEEAAAQGL+AG+N+   + K   +   R+D+YIGV+IDDL +KG 
Sbjct: 361 RGLFCAGQINGTSGYEEAAAQGLIAGMNAVLYTRKEAPVVLKRSDAYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR EYR+ LR DNAD RL PIG ++G I + + +   +     +  +  L +
Sbjct: 421 NEPYRMLTSRCEYRLLLRFDNADRRLAPIGRRMGLIDDVKWQILREKWAAVDHEKERLSN 480

Query: 481 LVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFSSLVIERL 536
           L +      +            ++  A + L  P+ +   +    P   R  +    + L
Sbjct: 481 LRINPSEEVNDWLVRAGSSPLEESVRAIDLLCRPEVTYGAMRPFLPSIERPLTDEEAQSL 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            IE  YA Y  RQ  +   +   EK  IP+DF Y  +P L +E ++KL  ++P NL QAS
Sbjct: 541 AIEVKYAGYIERQQRQVIRLSKGEKVYIPEDFSYDEVPGLLSESRQKLEKIRPQNLAQAS 600

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLN 621
           +I G+TPA + LL +Y++    +  
Sbjct: 601 RISGVTPADIQLLSVYLETRRRRKE 625


>gi|163737993|ref|ZP_02145409.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phaeobacter gallaeciensis BS107]
 gi|161388609|gb|EDQ12962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Phaeobacter gallaeciensis BS107]
          Length = 627

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/601 (53%), Positives = 423/601 (70%), Gaps = 1/601 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + +YDV+V+GGGHAG EAA  AA++G  TAL+T     IG MSCNPAIGGLGKGHLVREI
Sbjct: 6   HPNYDVVVVGGGHAGTEAAHAAARMGVKTALVTLTKDGIGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+M RVAD AGIQFR+LN +KGPAV+GPR Q+DR++YR  M  EI +Q NLD++ G
Sbjct: 66  DALDGVMARVADKAGIQFRLLNRRKGPAVQGPRAQSDRKIYRREMLAEIEAQPNLDIVTG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV  F  + + I  + + D S I    V+LT+GTFLRGVIHIG +  P GRMGD PS  L
Sbjct: 126 EVVDFLMKGDKIRGVRLADESEITSHAVILTSGTFLRGVIHIGDVSKPGGRMGDKPSVRL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 FD   GRLKTGTP RLDG+TI W+K E Q  D+    FSF+T  ++  Q+ CGI
Sbjct: 186 AERLDSFDLQLGRLKTGTPPRLDGRTIAWEKLEGQPGDDDPTFFSFLTTSVSASQVVCGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN  TH II +N++ SA+Y G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG++ 
Sbjct: 246 THTNTHTHDIIRDNLERSAMYGGHIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGVDD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LP ++Q  ++R++ GLE   I++PGYAIEYDY++P+ L   L  K   G
Sbjct: 306 HTVYPNGISTSLPLDVQEHYVRSVVGLEDAVILQPGYAIEYDYVDPRALGLDLALKSCQG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGTTGYEEAAAQGLVAG+N+AR S +++ + FSR+DSYIGVM+DDLT+ GV E
Sbjct: 366 LYLAGQINGTTGYEEAAAQGLVAGLNAARYSKEMEPVTFSRSDSYIGVMVDDLTTNGVTE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT IG  LGC+GE R++ F++ +++   +R+ + +  
Sbjct: 426 PYRMFTSRAEFRLSLRADNADQRLTGIGSNLGCVGEVRRELFSRKMEKLEEVRARMDTRQ 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            T K ++   I+  QDG  RTA + L++PD + +++  + P+       +  +++ ++ Y
Sbjct: 486 FTPKEINEAGIAVNQDGNRRTATDVLAFPDVAFEDILRLLPELETCEDSIRRQIERDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E + +K +E   IP DF Y     LSNEL+ KL   +P  L QA +++GMT
Sbjct: 546 ANYIIRQKREIEALKRDEGYRIPSDFSYD-FEGLSNELRGKLEKSRPGTLAQAGRVDGMT 604

Query: 603 P 603
           P
Sbjct: 605 P 605


>gi|126738504|ref|ZP_01754209.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
 gi|126720303|gb|EBA17009.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
          Length = 581

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/574 (55%), Positives = 402/574 (70%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGHLVREIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR Q+DR +Y
Sbjct: 1   MSCNPAIGGLGKGHLVREIDAMDGVMGRVADLAGIQFRLLNRRKGPAVQGPRAQSDRSVY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R  M RE  +Q+NL +I+GE   F  +   +S +V+ DNS I    V+LT+GTFLRGVIH
Sbjct: 61  RSEMLRETKAQKNLTIIEGEATDFVMKGTTVSGVVLADNSEISAGAVILTSGTFLRGVIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG      GRMGD PS  L      F+   GRLKTGTP RLDG+TI WD  EKQ  DE  
Sbjct: 121 IGDSSHSGGRMGDRPSIKLAEKLQSFELPLGRLKTGTPPRLDGRTINWDILEKQPGDEDP 180

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
           + FSF T K+   Q++CGIT TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIV
Sbjct: 181 VFFSFQTQKLNIPQVDCGITHTNEKTHEIIRENLSRSAMYGGHIDGIGPRYCPSIEDKIV 240

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF E+N HQIFLEPEG+    VYPNGIST+LP ++Q  ++R+I GLE   I++ GYAIEY
Sbjct: 241 RFAEKNSHQIFLEPEGVRDSTVYPNGISTSLPVDVQEDYVRSIIGLEAAKILQSGYAIEY 300

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L   LE K + GL+LAGQINGTTGYEEAAAQGLVAG+N+ARK  + D I FSR
Sbjct: 301 DYVDPRALTLELELKDVPGLYLAGQINGTTGYEEAAAQGLVAGVNAARKVLEKDPIIFSR 360

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            +SYIGVMIDDLT+ GV EPYRMFTSRAE+R+SLR DNAD RLTP G  +GCI E R K 
Sbjct: 361 ANSYIGVMIDDLTTNGVTEPYRMFTSRAEFRLSLRADNADQRLTPEGHSIGCISEERWKA 420

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F+   ++ +  R  L+    T K +SS  I   QDGK RT +E L +P+ S  ++ ++ P
Sbjct: 421 FSAKSEKLDTARRHLEGNRFTPKQVSSAGIHVNQDGKKRTGFEVLGFPNVSFNDVANLVP 480

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +       + ++L+ ++ Y+ Y  RQ  E   +K +E   IP+DFDYS +  LS EL +K
Sbjct: 481 EVLSTEPEIQKQLERDALYSNYIVRQEREIAAMKKDEGHKIPRDFDYSLIEGLSAELIQK 540

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           L+  +P  L +AS+I GMTPA L L+L  +++N 
Sbjct: 541 LTAARPETLAKASRINGMTPAGLALVLARLRRNQ 574


>gi|85706894|ref|ZP_01037984.1| glucose-inhibited division protein A [Roseovarius sp. 217]
 gi|85668505|gb|EAQ23376.1| glucose-inhibited division protein A [Roseovarius sp. 217]
          Length = 620

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/617 (54%), Positives = 435/617 (70%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG +A   AA++GA TAL+T   S IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVIVIGGGHAGADAGHAAARMGARTALVTLSRSGIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++Y   M  EI S   L +I GE
Sbjct: 62  ALDGVMGRVADRAGIQFRLLNRRKGPAVQGPRAQADRKIYCEEMLGEIESCSGLSIIVGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A F  +   ++ + + D S I  +TV+LTTGTFLRGVIHIG++  P GRMGD PS  L 
Sbjct: 122 AADFLMQGERVAGVRLIDGSEISGATVILTTGTFLRGVIHIGEVSRPGGRMGDRPSIPLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F    GRLKTGTP RL+GKTI W + E+Q  D+    FSFM+   + RQI CGIT
Sbjct: 182 ERLDGFGLAMGRLKTGTPPRLNGKTIDWARLEEQPGDDDPTLFSFMSKAPSARQISCGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II EN+  SA+Y G I   GPRYCPSIEDKIVRF ++  HQIFLEPE L+ D
Sbjct: 242 HTNTQTHDIIRENLGRSAMYGGHIDGIGPRYCPSIEDKIVRFSDKCSHQIFLEPESLSDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LP E+Q  ++R+I GLE   I++PGYAIEYDY++P+ L   L  K + GL
Sbjct: 302 VIYPNGISTSLPVEVQEAYVRSIHGLEAAEILQPGYAIEYDYVDPRALDGRLAVKSVPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+N+A ++       FSRTDSYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNAALEALGRAPAQFSRTDSYIGVMIDDLTTRGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD R+TP G++LGC+   R+  F K ++  +  R  L++   
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRMTPFGLELGCVSAPRKVAFEKKMERLSAARLRLETASY 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T ++LS   ++   DG  R+A++ LSYPD +  +L  + P+  +      +++  ++ YA
Sbjct: 482 TPRHLSDLGLNVNHDGARRSAFQILSYPDVTFSDLVQLDPEFAEIDLETQKQIAKDALYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +  ++K +E  +IP+ F Y S+  LSNELK KL+ ++P NL QA +IEGMTP
Sbjct: 542 TYIERQNRDVAKLKRDEAYVIPRSFGYGSIEGLSNELKSKLADVRPENLAQAGRIEGMTP 601

Query: 604 AALNLLLIYIKKNTVKL 620
           AAL+L+L  +++   + 
Sbjct: 602 AALSLILAKLRQAAREK 618


>gi|34557213|ref|NP_907028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolinella succinogenes DSM 1740]
 gi|81170590|sp|Q7M9M5|MNMG_WOLSU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|34482929|emb|CAE09928.1| GLUCOSE INHIBITED DIVISION PROTEIN A HOMOLOG [Wolinella
           succinogenes]
          Length = 625

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/616 (43%), Positives = 364/616 (59%), Gaps = 5/616 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DVIV+GGGHAG EAA  +A++G  T L+T     IG+ SCNPAIGGL KGHLV+EID
Sbjct: 2   RDFDVIVVGGGHAGIEAAHASARMGCKTLLLTILVEQIGAASCNPAIGGLAKGHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+V D  G+QFR LN  KGPAVRG R Q D + YR+ M+   L+  NL V Q  
Sbjct: 62  ALGGVMGKVTDLCGLQFRTLNASKGPAVRGTRAQIDMDRYRIMMRNLCLTTPNLTVAQEM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+  +  +  Q     R + V++TTGTFL G++HIG      GR+G+  S  L 
Sbjct: 122 VEELIVEEGAVLGVRTQIGREYRSAKVIMTTGTFLNGLVHIGNRTSSNGRVGEPSSIKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECG 241
            S      + GRLKTGT AR+  ++I +   E+   D    PFSF T  ++    Q+ C 
Sbjct: 182 ESLRSLGLEVGRLKTGTCARIASESIDFSVMEQHPGDLPPPPFSFSTKKEEFAPTQLPCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II  N   + +++G I+  GPRYCPSIEDK+ RF ER  HQIF+EP+ L 
Sbjct: 242 VTYTNEKTHEIIRSNFHRAPMFTGQIEGIGPRYCPSIEDKVNRFKERERHQIFVEPQTLE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG++T++P ++Q   IR++ GL+   I+R GYAIEYDY+NP EL  TLETKKI 
Sbjct: 302 ATEYYLNGLTTSMPFDVQEAMIRSMAGLQNARIVRYGYAIEYDYVNPVELKHTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+LAGQINGTTGYEEA AQGL AGIN+A      +     R ++Y+GV+IDDL +KG  
Sbjct: 362 NLYLAGQINGTTGYEEAGAQGLAAGINAALSVKGEEPFVLRRDEAYLGVLIDDLVTKGTK 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNA+ RL   G + G + E       K  Q  +     L+  
Sbjct: 422 EPYRMFTSRAEYRLLLREDNAEFRLLRHGARFGLVEEEALLALQKDEQSIHGGLVHLRES 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLS---YPDFSIQNLFSICPDARKFSSLVIERLQI 538
             T    +   +    + K      +L+      F    L  I P   + S   + ++ I
Sbjct: 482 SATPSKETLAFLEEMGEEKINDKTTWLAIAGRKSFDEAKLRKISPLFEEMSERALGQVLI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ YA+Y  +Q      ++   K  IP+ F + ++P LS E+ EKL    P  L  AS+I
Sbjct: 542 EAKYASYIQKQQESVGSMQEMLKVKIPEGFIFDTVPGLSLEVIEKLKRFNPPTLFAASEI 601

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPA+L++L +YI 
Sbjct: 602 SGITPASLDVLHLYIH 617


>gi|218962059|ref|YP_001741834.1| glucose-inhibited division protein A [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730716|emb|CAO81628.1| glucose-inhibited division protein A [Candidatus Cloacamonas
           acidaminovorans]
          Length = 615

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/621 (44%), Positives = 378/621 (60%), Gaps = 10/621 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +D+IV+G GH+G EA+  AAK G   AL T K   IG MSCNP+IGG  KGHL REI
Sbjct: 4   DNKFDLIVVGAGHSGIEASLAAAKRGLKVALFTIKIEAIGRMSCNPSIGGPAKGHLAREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G + + AD +GI FR+LN  KGPAV  PR+Q DR+ Y L M+  +  QEN+ +I+ 
Sbjct: 64  DALGGELAKSADLSGIHFRMLNRSKGPAVWAPRSQNDRQKYHLLMREAVEKQENIHLIEA 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            +     E   +  ++ Q         ++L TGTFL+G IHIGK+    GR G+     L
Sbjct: 124 TIEEIIVENGCVKGVISQIGHCYYAPKIILATGTFLQGKIHIGKISYAGGRSGEPSVEYL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S   +     R KTGTP R+D +++ ++K E+Q  DE    FSF  D      + C I
Sbjct: 184 SRSLSAWGLKVRRFKTGTPPRVDLRSVNYNKLEEQKGDENPQGFSFYRDIEIKNLVSCYI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETH+II  N+  SA+YSG IK  GPRYCPSIEDKIV+F +R  H IF+EPEGLNT
Sbjct: 244 THTTEETHQIIRANLTESALYSGIIKGIGPRYCPSIEDKIVKFPQRESHHIFIEPEGLNT 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NGIST+LP EIQ + + +IPGLE+  I+R  YAIEYD+I+P+E+  +L+ KKI G
Sbjct: 304 FEGYVNGISTSLPAEIQEKIVHSIPGLEEARILRYAYAIEYDFIDPEEIDSSLQCKKIKG 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+LAGQINGT+GYEEAAAQGL+AGIN++      + +   R+++YIGV+IDDL ++G  E
Sbjct: 364 LYLAGQINGTSGYEEAAAQGLLAGINASLALENKEPLILKRSEAYIGVLIDDLVTRGTNE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RL P+G KLG + E R +RF +  +        LK   
Sbjct: 424 PYRMFTSRAEYRLLLRQDNADERLMPVGYKLGLVEESRWQRFLQMQEILRRELKYLKQHN 483

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESS 541
                     I F Q          L  P+ S  +L +         +S +  RL++E  
Sbjct: 484 CLPNGEIKEPIRFAQ---------LLKRPEISFNDLQNYGYKIPADVNSDIQNRLELEIK 534

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  R   E ++ +  E   IP++ DY S+P+L+ E +EKLS ++P N+ QA +I G+
Sbjct: 535 YSGYLNRMEEEIQKFQNAETIAIPEEMDYFSIPSLAYEAREKLSKIRPKNIGQAMRIPGI 594

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
             +    L+I+++KN  K  +
Sbjct: 595 NYSDSVALMIWLRKNAKKEAK 615


>gi|269118889|ref|YP_003307066.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
 gi|268612767|gb|ACZ07135.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
          Length = 628

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/624 (42%), Positives = 383/624 (61%), Gaps = 14/624 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+G GHAGCEAA  +A+LG  TA+ T     IG MSCNP++GG  K HLV+EID
Sbjct: 2   RDYDVIVVGAGHAGCEAALASARLGMKTAIFTITLDNIGMMSCNPSLGGPAKSHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D + IQ R+LN KKGPAVR  R QADR++Y   M++ + +QENLD+IQ  
Sbjct: 62  ALGGEMACNMDKSFIQMRILNTKKGPAVRSLRAQADRKVYSREMKKTVENQENLDIIQDI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V    TE   ++ I  +         V+L TGTFL+G++HIG  KI  GRMG+  S  L 
Sbjct: 122 VTELKTENGKVTGISTKTGLEFTAKVVILATGTFLKGLMHIGDRKIKGGRMGELSSEELS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDKIT---NRQIE 239
           +S  K     GR KTGTP R+D +TI  D  E+Q  + E+L+ FS  T        +Q+ 
Sbjct: 182 DSLAKEGLKIGRFKTGTPPRVDIRTINLDILEEQPGETEKLLKFSARTKDEDIKGRKQLS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT    H II+ N+  + +Y+G I S GPRYCPSIEDK+V+F E++ H +FLEPEG
Sbjct: 242 CYLTRTTPNIHSIILSNLDKAPMYNGSIDSTGPRYCPSIEDKVVKFSEKDSHHLFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  VY +G+ST+ P EIQ + +  + GLE  +I+R GYA+EYDY++P  L  TLE++ 
Sbjct: 302 FDTSEVYISGLSTSFPAEIQQKIVNNVIGLENAHIMRYGYAVEYDYVDPSGLKYTLESRA 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+LAGQINGT+GYEEAAAQGLVAG+N+ +K    + +   R DSYIG MIDDL +K 
Sbjct: 362 VENLYLAGQINGTSGYEEAAAQGLVAGVNAVQKLKNKEPLILDRADSYIGTMIDDLINKE 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           ++EPYRMFT+R+EYR+ LR DNAD RL   G K+G + E   K+     +    +  +L+
Sbjct: 422 IMEPYRMFTARSEYRLILREDNADLRLAETGYKIGLVSEEEYKKTVHKRESVKKIIEILE 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEF---LSYPDFSIQNLFSIC------PDARKFSS 530
           +  L + N     I  K     ++       L  P  +  ++  I       PD   +  
Sbjct: 482 NTKLGTSNGRLVEILDKYGDSLKSGTTLKETLRRPKVTYDDIKYIAGIMNDVPDL-SYDE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +  + +++  Y  Y  +     +  K  E+++IP++FDY+ +  ++ E K++L   +P 
Sbjct: 541 DIEYQTEVQVKYEGYIQKSYQIIERQKRLEEKMIPENFDYNRMLGITREAKQRLGEKRPH 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIK 614
           N+ QAS+I G+TPA +++LL+Y++
Sbjct: 601 NIGQASRIVGVTPADVSVLLMYLE 624


>gi|227498805|ref|ZP_03928945.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acidaminococcus sp. D21]
 gi|226904257|gb|EEH90175.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Acidaminococcus sp. D21]
          Length = 626

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/614 (43%), Positives = 362/614 (58%), Gaps = 4/614 (0%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           G GHAGCEAA  AA++G  T L T     I  M CNP++GG  KGHLVREIDAL G MG 
Sbjct: 13  GAGHAGCEAALAAARMGKKTLLATLSMDNIALMPCNPSVGGPAKGHLVREIDALGGQMGI 72

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
            AD A IQ R+LN  KG AV+  R QAD+ LY   M+  + + ENLDV Q  +       
Sbjct: 73  AADEACIQMRMLNTGKGYAVQALRAQADKPLYHTIMKEVVENTENLDVKQLMIDELLVRG 132

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             +  IV +   +     V+L TGT+LRG I  G++   AG  G   +  L +S +K   
Sbjct: 133 GAVEGIVAETGEVFEAPCVILATGTYLRGRILYGEVAYMAGPNGQRSAMKLTDSLVKAGL 192

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHR 251
              R KTGTPAR+D +TI + +TE Q+ DE +  FSF++     +Q+ C +T TN  TH+
Sbjct: 193 TLMRFKTGTPARVDRRTIDFSRTEPQYGDEAVRNFSFISPITERQQVPCYLTYTNPRTHQ 252

Query: 252 IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS 311
           II +N+  S +++G I+  GPRYCPSIE KIVRF +++ HQ+FLEPEGL T+ +Y  G+S
Sbjct: 253 IIRDNLDRSCMFNGTIEGVGPRYCPSIEAKIVRFADKSRHQLFLEPEGLRTNEIYVQGMS 312

Query: 312 TALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING 371
           ++LP EIQ  F++TIPGLE   ++R GYAIEYD ++P +L  +LE K I GLF  GQ NG
Sbjct: 313 SSLPAEIQVAFMQTIPGLEHCKMMRAGYAIEYDCLDPLQLTASLEHKAIKGLFSCGQANG 372

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
           T+GYEEAAAQGL+AGIN+A K +        R+D+YIGV+IDDL +KG  EPYRM TSRA
Sbjct: 373 TSGYEEAAAQGLMAGINAALKLDHRPPFILGRSDAYIGVLIDDLVTKGTTEPYRMMTSRA 432

Query: 432 EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           EYR+ LR DNAD RLT  G  +G + + R   F K   E       L    L     +  
Sbjct: 433 EYRLLLRQDNADLRLTQKGRNVGLVKDDRYTAFTKKRDEIERALFALSKKNLAPSEENQQ 492

Query: 492 SI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGR 548
            I          +    E L  P+ + + L     D    S +  E + +E  Y  Y  +
Sbjct: 493 KIMAMGSVPLKSSINMMELLRRPEITYEKLQQAF-DLEPLSPVAAEEVDVEVKYKGYIDK 551

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q  E       E RL+P D DYS+L  LS+E  EKL   +P ++ QAS+I G++PA +++
Sbjct: 552 QKQEVMRAMKLENRLLPDDIDYSALHELSSEAAEKLEKQRPLSIGQASRISGVSPADISV 611

Query: 609 LLIYIKKNTVKLNE 622
           L++Y++    K  E
Sbjct: 612 LMVYLESRRRKGEE 625


>gi|332881635|ref|ZP_08449283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680274|gb|EGJ53223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 623

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 369/623 (59%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFDYDVIVIGGGHAGCEAAAASANMGAQTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +V     E   ++ +    +  IR   V+LTTGTFL G++HIG  ++P GR+ +  S  
Sbjct: 121 DQVKELLVEHGEVAGVKTYFDVTIRARCVILTTGTFLNGLMHIGHTQLPGGRVAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +   + GR+KTGTP R+DG+++ +++ E Q  +     FSFM      +Q+ C 
Sbjct: 181 LTESIARHGINYGRMKTGTPVRIDGRSVHFEEMEIQEGEHDYHKFSFMGRDRQLKQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +Y+G I+S GPRYCPSIE K+V F ER+ HQ+FLEPEG +
Sbjct: 241 TCFTNPEVHEVLRSGLPDSPLYNGQIQSIGPRYCPSIETKLVTFPERDQHQLFLEPEGES 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y NG S++LP  IQ + ++ IP    + I RPGYAIEYDY +P +L+ TLE+K + 
Sbjct: 301 TQEYYLNGFSSSLPLHIQIEALKKIPAFRDLAIYRPGYAIEYDYFDPTQLYHTLESKILP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF+AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R +SYIGV+IDDL +KGV 
Sbjct: 361 GLFMAGQVNGTTGYEEAGGQGIVAGINAALKCSGGEPFVMHRDESYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    ++G     R   +         + S  K  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTERSYQIGLATRERYDHWLSKKDAVERIVSFCKEF 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            L    ++S   ++           +E ++ P  +++N+       +            +
Sbjct: 481 SLKPALINSGLEALGTTPLKYGCKLFELINRPQITVKNIAEHIAPLKALLDTLTDRRDEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ I A +++  E   I   FDY ++ +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYHGYIARERIIADKMQRLESIKIKGRFDYKNMNSLSTEARQKLEKINPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA +I G++P+ +N+LL+ + +
Sbjct: 601 AQAGRIPGVSPSDINVLLVLLGR 623


>gi|255536701|ref|YP_003097072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342897|gb|ACU09010.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Flavobacteriaceae bacterium 3519-10]
          Length = 620

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/620 (44%), Positives = 377/620 (60%), Gaps = 5/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI+  YDVIV+G GHAG EAAA AA +G+ T LIT    TIG MSCNPA+GG+ KG +VR
Sbjct: 1   MISEIYDVIVVGAGHAGSEAAAAAANMGSKTLLITMNMQTIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G +AD + IQF++LN+ KGPA+  PRTQ DR L+    +  + +  NLD  
Sbjct: 61  EIDAMGGYSGIIADKSAIQFKMLNLSKGPAMWSPRTQNDRMLFAEEWRIALENTPNLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N +  +V      IR  +VVLT GTFL G+IH+G  ++  GRMG+  + 
Sbjct: 121 QDMVKSLIIENNKVCGVVTSLGIQIRGKSVVLTNGTFLNGLIHVGDKQLGGGRMGEPRAF 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+       +Q+ C
Sbjct: 181 GITEQLVSLGFEAGRMKTGTPPRVDGRSLDYSKMEEQKGDENPQKFSYSDTPTLTKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN   H I+ E    S +++G I+S GPRYCPSIEDK+ RF ER  HQ+F+EPEG 
Sbjct: 241 HIVYTNETVHEILKEGFDRSPMFNGTIQSIGPRYCPSIEDKVNRFAERTRHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LPE++Q + ++ IPG E V + RPGYAIEYDY  P +L  TLETK I
Sbjct: 301 RTVEIYVNGFSSSLPEDVQIKAMKHIPGFENVKVFRPGYAIEYDYFPPTQLHHTLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA QGL+AGIN+  K  + +     R ++YIGV+IDDL +KG 
Sbjct: 361 ENLYFAGQINGTTGYEEAAGQGLMAGINAHNKVKEKEEFILKRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT     +G   E R K     I + + L   L+ 
Sbjct: 421 EEPYRMFTSRAEYRLLLRQDNADVRLTEKSFNIGLADEHRLKNVQNKIAQGSELEGFLRE 480

Query: 481 LVLTS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC---PDARKFSSLVIER 535
             L     N     I      +   A + L+ P+ ++Q L  I      + +FS  V E+
Sbjct: 481 TSLKPGIINPILAEIESAPVDQAYKASQILTRPNMTLQKLEQIDFIKERSSEFSDEVKEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I   Y  Y  ++     ++   E   IP+DFD+  + +LS E ++KL+ ++P  + QA
Sbjct: 541 AEINIKYKGYIDKERESVAKMTRLETIAIPEDFDFCKINSLSAESRQKLNKVRPRTIAQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
            +I G++PA +N+LLIY+ +
Sbjct: 601 GRISGVSPADMNVLLIYLGR 620


>gi|78778117|ref|YP_394432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurimonas denitrificans DSM 1251]
 gi|123549636|sp|Q30P84|MNMG_SULDN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78498657|gb|ABB45197.1| Glucose-inhibited division protein A subfamily [Sulfurimonas
           denitrificans DSM 1251]
          Length = 626

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/619 (44%), Positives = 382/619 (61%), Gaps = 11/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVI+IGGGHAG EA+  +A++G  T LI+     +G+ SCNPAIGGL KGHLVREIDA
Sbjct: 2   NYDVIIIGGGHAGVEASLASARMGNKTLLISMLAENVGATSCNPAIGGLAKGHLVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M  + D AGIQFR+LN  KGPAVRG R Q D + YR+  + +IL+  NL+++Q   
Sbjct: 62  LGGEMALITDEAGIQFRILNQTKGPAVRGSRAQIDMDRYRVIARNKILNTPNLELVQEMA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +     +      V++T+GTFLRGVIH+G++K   GR G+  S++L  
Sbjct: 122 ESLIIEDGEVKGVKTNLLNEYSAKRVIVTSGTFLRGVIHVGEIKQIGGRYGEQSSDALSA 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           S      + GRLKTGT AR+D  TI +   E+Q  DE   PFSF T++     T +QI C
Sbjct: 182 SLKSCGLEMGRLKTGTCARVDASTIDFSVMEEQGGDELPNPFSFRTNREEFRKTKKQIPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ L
Sbjct: 242 YITYTNQNTHDIIESNFYRAPMFTGQIEGRGPRYCPSIEDKINRFRDKERHHLFIEPQTL 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
                Y NG+ST+LP ++Q   I ++ G+E   I+R GYAIEYD+++P+EL  TLETKKI
Sbjct: 302 ENTECYINGMSTSLPPDVQQLMINSVKGMENAKIVRYGYAIEYDFVDPRELKHTLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGL+AGIN++      +     R ++YIGV+IDDL +KG 
Sbjct: 362 KGLYLAGQINGTTGYEEAAAQGLMAGINASLSLQGKEPFILRRDEAYIGVLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR ++AD RL+  G   G I +   +R      +      +L+ 
Sbjct: 422 KEPYRMFTSRAEYRLLLREESADTRLSHYGHTFGLIDDENYERVKAKEAQIQEGARILRE 481

Query: 481 LVLTSKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
            + T        L+S      +D  T +A + ++   F +  +  + P+   + S +++ 
Sbjct: 482 TIFTPNKEFIAFLNSIGEEGVRD--TISAEQIVARKSFDVSKMLKLIPEFEMYESYILDE 539

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + +E  YA Y  +Q  E +++K   K  IP++F + S+  LS E+ EKL    P  L  A
Sbjct: 540 ILVEGKYARYVQKQSEEIQKMKKYLKVEIPQNFAFRSISGLSKEIVEKLESFNPPTLQAA 599

Query: 596 SKIEGMTPAALNLLLIYIK 614
           S+I G+TPAA+ +L IYIK
Sbjct: 600 SQISGITPAAIEILHIYIK 618


>gi|160916053|ref|ZP_02078260.1| hypothetical protein EUBDOL_02080 [Eubacterium dolichum DSM 3991]
 gi|158431777|gb|EDP10066.1| hypothetical protein EUBDOL_02080 [Eubacterium dolichum DSM 3991]
          Length = 619

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/619 (40%), Positives = 365/619 (58%), Gaps = 7/619 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A++   T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARMKKKTLLYSMNIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ  +LS ENL+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTNKGPGVQCLRVQSDKLAYKKYMQDVVLSCENLEVREMCVEK 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  ++ +D        V++T+GT++   I +G    P+G   +  +N+L  S 
Sbjct: 123 VLAENGKVKGVLQKDGHEEYSQAVIVTSGTYMSSCILVGHTSTPSGPDQEPTTNALSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITR 244
                 T RLKTGTPAR+   +I + KTE Q   +  + FS  T  I    +Q  C +T 
Sbjct: 183 RDLGITTFRLKTGTPARVKTSSIDFSKTEVQPGSDAFLAFSTETKSIRPFDKQALCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH+II +N+  SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE    D 
Sbjct: 243 TNAKTHQIIRDNLDKSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESEQLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++ GLE   I +  YAIEYD I+P +  PTLE K +  L+
Sbjct: 303 TYIQGFSTSMPHDVQEDMLHSLAGLEHCEIEKYAYAIEYDAIDPLQCKPTLENKLVENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+  K +    +   R ++YIGV+IDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAGQGLMAGINACLKLDHKAPLILHRDEAYIGVLIDDLVTKGTQEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL   G +LG I E R  R+ + +++    ++ L+++  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADQRLMRYGHELGLISEERYARYKQKLKDIEDTKAYLETVRFT 482

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K+  +  +      +  +  +A E L  P+ ++  L       RK  + V  +L+I+  
Sbjct: 483 PKSEINMFLKANGYDELKEGVSARELLKRPNVTMYMLMPYL--DRKVDAEVSRQLEIDIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   +AK ++  +  ++P D  Y  +  LS E ++KL+ + P  + QAS+I G+
Sbjct: 541 YEGYILKAKRDAKHLRDMDNVVLPTDICYDEVANLSLEARQKLAKVMPLTMGQASRISGV 600

Query: 602 TPAALNLLLIYIKKNTVKL 620
            PA + +L +Y+++   K 
Sbjct: 601 NPADIAVLAVYLEQRKRKA 619


>gi|262166773|ref|ZP_06034510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus VM223]
 gi|262026489|gb|EEY45157.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio mimicus VM223]
          Length = 566

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/566 (43%), Positives = 335/566 (59%), Gaps = 6/566 (1%)

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + Q  V
Sbjct: 1   MGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLFQQAV 60

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +V Q         VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 61  DDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSIALAH 120

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI C IT
Sbjct: 121 RLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIPCYIT 180

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T 
Sbjct: 181 HTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTT 240

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 241 ELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKFIHGL 300

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EP
Sbjct: 301 FFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEP 360

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+   +
Sbjct: 361 YRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQETWM 420

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              ++    ++        +  +  + L  P+ + + L ++         S   E+++I+
Sbjct: 421 NPNSVGVEQLNALLKTPMSREASGEDLLRRPEMTYELLTTLPAFTPALEDSEAAEQVEIQ 480

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP  +  AS+I 
Sbjct: 481 VKYDGYIQRQQDEIEKSLRHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGIASRIS 540

Query: 600 GMTPAALNLLLIYIKKNTV-KLNEIV 624
           G+TPAA+++LL+++KK+ + K  E  
Sbjct: 541 GITPAAISILLVHLKKHGMLKKGEAA 566


>gi|256846128|ref|ZP_05551586.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
 gi|256719687|gb|EEU33242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
          Length = 633

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVAEEENGKKIIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D +  
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALNR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H+II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQIPCYIAHTNEKVHKIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVKNLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILVKTNVGPSNPRVNEILLKRGENPIKDGSTLLELLRRPEVTFEDIKYISEEIKGLDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDYDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|220905196|ref|YP_002480508.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869495|gb|ACL49830.1| glucose inhibited division protein A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 660

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/648 (42%), Positives = 369/648 (56%), Gaps = 37/648 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D IV GGGHAGCEAA   A++G S  LI+     +G +SCNPAIGGL KGH+ REIDA
Sbjct: 9   TFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKGHMAREIDA 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADAAGIQFR+LN+ KGPAVR  R Q DR +Y+  +Q+ + S   L + Q  V
Sbjct: 69  LGGMMGLWADAAGIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPGLRIWQDSV 128

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  +  + +            V+LTTGTFL G IH+G   IP GR+GD+P+  L +
Sbjct: 129 IEITAGDSRATGVRTAQGLEFSARHVLLTTGTFLDGRIHMGLTSIPGGRLGDAPALGLSD 188

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S     F+ GRLKTGT  RL   +I +   E+Q  D+    FSF        Q+ C +T 
Sbjct: 189 SLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLPQVPCHVTW 248

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN + H II      S +++G IK  G RYCPSIEDKI RF +R  HQIFLEPEGL++  
Sbjct: 249 TNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLEPEGLDSAE 308

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY NGIST+LP ++Q   I  +PGLE   ++RPGYAIEYD+ +P +L PTLE+K + GL+
Sbjct: 309 VYANGISTSLPLDVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLESKAVPGLW 368

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGT+GYEEAAAQGL A +N + +  ++      R ++Y+ V++DDL + G  EPY
Sbjct: 369 LAGQINGTSGYEEAAAQGLWAALNISCRLREMPPFLLGRDEAYMAVLVDDLVTSGTQEPY 428

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAE+R+ LR DNAD RLTP G +LG + +     F +     N LRS L+   + 
Sbjct: 429 RMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRSGLEQKRIP 488

Query: 485 SKNLSSTSISFKQD---------------GKT------RTAYEFLSYPDFSIQNLFSI-- 521
           +    S +     D               GKT      RT  E L  P+  +  L ++  
Sbjct: 489 APGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDLHGLAALLR 548

Query: 522 -------CPDARKFSSL-------VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
                     A             V E +Q E  YA Y  RQ          E   +P D
Sbjct: 549 SCACEDTAAAAEFLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKLESTALPPD 608

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            DY+++  LS E+ EKL  ++P +L QA +I G+TPAA+  L I++ K
Sbjct: 609 LDYATVAGLSREVTEKLDRVRPLSLGQAGRISGVTPAAVGCLEIHLHK 656


>gi|58039526|ref|YP_191490.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconobacter oxydans 621H]
 gi|81170545|sp|Q5FS12|MNMG_GLUOX RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58001940|gb|AAW60834.1| Glucose inhibited division protein A [Gluconobacter oxydans 621H]
          Length = 618

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/614 (48%), Positives = 394/614 (64%), Gaps = 5/614 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAGCEAAA +A+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVREIDA
Sbjct: 3   DFDVIVIGGGHAGCEAAAASARFGARTLLLTHRLETIGAMSCNPAIGGIGKGHLVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG+ AD AGI F++LN  KGPAV GPR QADR LYR A+Q  + +  NL +++G  
Sbjct: 63  LDGLMGKAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRAAIQDLLAATPNLTILEGAA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I+ ++ +D    RC  VVLTTGTFLRGVIH+G  +  AGR+G++P+  L  
Sbjct: 123 GDLIEENGRITGVICEDGREFRCGAVVLTTGTFLRGVIHVGHTQTEAGRIGEAPAKRLGE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTP RL   +I WD       D     FS MT  I N Q+ C I+ 
Sbjct: 183 RLYALGLQMGRLKTGTPPRLARDSIDWDNLPADPGDAEPEAFSPMTTAIINPQVVCRISH 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE----GL 300
           T  ETHRII EN+  SA+Y G I   GPRYCPSIEDK+VRF ER  HQ+FLEPE      
Sbjct: 243 TTAETHRIINENLHRSAMYGGAIAGRGPRYCPSIEDKVVRFAERTSHQVFLEPEALPGNP 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D+VYPNGIST+LP ++Q   I T+PGLE   I+  GYA+EYDY++P+EL P+L+ +++
Sbjct: 303 GGDLVYPNGISTSLPADVQAAMIATMPGLENARIVTAGYAVEYDYVDPRELLPSLQLRRL 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEA AQGL+AG+N+AR +   + +   R+D+Y+GVMIDDLT  G+
Sbjct: 363 PGLYLAGQINGTTGYEEAGAQGLLAGLNAARATAGNEPLTLDRSDAYLGVMIDDLTLHGI 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR++LR DNAD RLTP G+  GC+   R+  F     E +   +    
Sbjct: 423 SEPYRMFTSRAEYRLTLRADNADLRLTPKGIAAGCVLPEREAAFTAQKAELDAAMARAAE 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                + L         DG+ RT  + L+  +     L ++ P   +    V   ++ E+
Sbjct: 483 TTFLPQTLRDVGFEVSLDGRRRTVLDVLA-SNGDHTKLDTLAPWFAELPLRVRRHVETEA 541

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E +++  E    +P D DY+++  LS+E++E+ S  +P +   A ++ G
Sbjct: 542 RYDGYLHRQDREIRQLASESAIALPADLDYTAIGGLSSEMRERFSQARPTSFAAAQRVRG 601

Query: 601 MTPAALNLLLIYIK 614
           +TPAAL  LL +++
Sbjct: 602 VTPAALVALLAHVR 615


>gi|116747555|ref|YP_844242.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Syntrophobacter fumaroxidans MPOB]
 gi|205831562|sp|A0LEF5|MNMG_SYNFM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116696619|gb|ABK15807.1| glucose inhibited division protein A [Syntrophobacter fumaroxidans
           MPOB]
          Length = 642

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/618 (42%), Positives = 377/618 (61%), Gaps = 3/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y+VIV+G GHAGCEAA  AA++G  T +++    T+  M C+P++GG+GKGHLVREID
Sbjct: 2   NKYEVIVVGAGHAGCEAALAAARMGCRTLVLSICLDTVAHMPCSPSVGGVGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M  + D   IQFR+LN KKGPAV G RTQ D+  YR++M+  + S+ NLD+ Q  
Sbjct: 62  ALGGRMALITDRTAIQFRLLNTKKGPAVWGTRTQNDKARYRISMKHCLESEPNLDLKQAH 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E N I  ++ Q         VVL TGTFLRG++HIG   + AGR G+  S  L 
Sbjct: 122 VESLAVEGNRIVGVIDQLGVFFGADAVVLATGTFLRGLVHIGTTSVEAGRAGELASYPLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           N   +  F  GR+KTGTPARL  ++I + +  +Q  DE   PFS  TD I   Q+ C I 
Sbjct: 182 NQLQRLGFTLGRMKTGTPARLGRRSIDFSRFREQHGDEAPKPFSLFTDSIALPQVSCFIG 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T+  TH ++  +I  S +Y+G I+    RYCPS+EDK++RF +++ HQI LEPEGL+T+
Sbjct: 242 KTHQRTHELVRRHIHLSPLYNGTIRGVSARYCPSLEDKVMRFPDKDFHQIILEPEGLDTE 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY +G   +LP +IQ + I ++PGLE+  ++RP YAIEYD++ P +L  TL +K + GL
Sbjct: 302 EVYASGTGNSLPYDIQLRLIHSVPGLEEAEVMRPAYAIEYDFVQPTQLKATLGSKLVEGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           ++AGQINGT+GYEEAA QGL AGIN+A K+         R+++Y+ VM+DDL ++G  EP
Sbjct: 362 YMAGQINGTSGYEEAAGQGLWAGINAALKAQGRPPFILDRSEAYLAVMVDDLVTRGTNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+FTSRAEYR+ LR DNAD RL   G +LG       K   +           L+   +
Sbjct: 422 YRIFTSRAEYRLLLREDNADLRLLEKGCELGLHSADAAKELRERRGAIRNELERLRLTHV 481

Query: 484 TSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                 + +++              + L  P+ +   +  + P     SS V E++++E 
Sbjct: 482 RPSAQVNQTLAENHSPPLDAPAPLDKLLKRPELNYSTVAILSPPPEPLSSKVTEQVEVEC 541

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ  E  + +  E+  IP+D  Y  +P LSNEL++KL  ++P +L QA++I G
Sbjct: 542 KYEGYLKRQEAEVAKFRQLEQAAIPEDLMYDDIPGLSNELRQKLGAVRPLSLGQATRIPG 601

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAA+++L++++++   
Sbjct: 602 MTPAAVSVLMVHLRRRAQ 619


>gi|298207256|ref|YP_003715435.1| glucose-inhibited division protein A [Croceibacter atlanticus
           HTCC2559]
 gi|83849892|gb|EAP87760.1| glucose-inhibited division protein A [Croceibacter atlanticus
           HTCC2559]
          Length = 623

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 374/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA +G ST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFESEYDVIVVGAGHAGSEAAAAAANMGCSTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    + ++    NLD  
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLKLEQTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   EK+ +  +       +R  TVVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 121 QEMVAGLIVEKDKLVGVRTSLGLEVRGKTVVLTNGTFLNGLIHIGEKQFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +   F++GR+KTGTP R+DG+++ + K  +Q  D+    FS+    K   +Q  
Sbjct: 181 GITADLLNLGFESGRMKTGTPPRVDGRSLDYSKMTEQPGDDIPWKFSYSDITKPLEKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSPEVHDLLREGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQMFIEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFKALRSVVGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAA+QGL+AG+N+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLFFAGQINGTTGYEEAASQGLIAGVNAALKVKEQDEFILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT    ++G   E R  +      +        K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTGKSFEIGLASEERYNKMLDKKDKSESFVDFFK 480

Query: 480 SLVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
           +     K  +      +     +    ++  S P  ++ ++                + V
Sbjct: 481 NTSYDWKEANEILKENNSATVKQNDKLFKLFSRPQITMDDVRQFNDVENYIQEHNLDTEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +++  YA Y  ++   A +++  E   IP DFDYS L ++S E +EKL  ++P  +
Sbjct: 541 LEQTEVQVKYAGYIEKEKNNADKLQRLEYVKIPSDFDYSQLKSMSYEAREKLQEIQPRTV 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS++ G+ PA +++LL+Y+ +
Sbjct: 601 SQASRVSGVNPADISVLLVYLGR 623


>gi|116619160|ref|YP_821316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122256194|sp|Q02D35|MNMG_SOLUE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116222322|gb|ABJ81031.1| glucose inhibited division protein A [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 604

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/615 (44%), Positives = 385/615 (62%), Gaps = 24/615 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIG GHAGCEAA   A++G  TA++T     I  MSCNPAIGG+ KGHLVRE
Sbjct: 4   MPERYDVVVIGAGHAGCEAARACARIGLRTAMVTMNLDLIAQMSCNPAIGGIAKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+MG VAD+ GIQFR+LN  +GPAV  PR Q D++LYR  M+  + ++ NL + Q
Sbjct: 64  IDALGGVMGEVADSVGIQFRLLNTSRGPAVWSPRAQMDKKLYRFRMREVLEAEPNLRIKQ 123

Query: 122 GEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            EVA    +    ++ ++++D   I    V++TTGTFL G+ H+G++    GR G++PS 
Sbjct: 124 AEVAALTFDAVRRVNGVLLRDGRTIPAGAVIVTTGTFLNGLAHVGEMTYSCGRNGEAPSQ 183

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +       +  RLKTGTP RLDG++I W   E Q  D    PFSF+T +I  +QI+C
Sbjct: 184 LLGDQLRSMGLNWTRLKTGTPPRLDGRSIDWSSFEPQAGDAEPTPFSFLTGRIERQQIQC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  T  ET R++ E I  S +YSG I+  GPRYCPSIEDK V+F ++  HQIFLEPEGL
Sbjct: 244 HIGYTTDETRRVLQEAIPRSPLYSGQIEGVGPRYCPSIEDKFVKFPDKVRHQIFLEPEGL 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY NG+ST++P ++Q   + +IPGLE+  +IRPGYAIEYD I+P+EL  TLE K I
Sbjct: 304 DTHEVYVNGMSTSMPTDVQVAMVASIPGLEQAEMIRPGYAIEYDAIDPRELNHTLEVKSI 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEA  QGL+AG+N+A      D +   RT+ Y G+++DDL +KG 
Sbjct: 364 PGLYLAGQINGTSGYEEAGIQGLIAGLNAAMSLGGSDPVIIGRTEGYAGILVDDLITKGA 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLTP+G + G   + R + F +  ++   L    ++
Sbjct: 424 DEPYRMFTSRAEFRLHLRIDNADARLTPLGRRAGLATDERWELFQRKERQKLRLTQAFET 483

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--VIERLQI 538
                           ++G+       L  P+ SI +      +    +    ++E +  
Sbjct: 484 ---------------HKNGQ------LLKRPEVSISDFLPWIVEVLGEAPCRGLLETVST 522

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  +Q  +   +K  E+R IP  F+Y  +P LS E+++KL  ++P  L QA ++
Sbjct: 523 EAKYGGYIQQQERQMARMKDSERRAIPHGFEYRGIPGLSREIQDKLDKVRPGTLGQAGRV 582

Query: 599 EGMTPAALNLLLIYI 613
            G+TPAA+ +L  Y+
Sbjct: 583 PGVTPAAIAVLDCYL 597


>gi|86131106|ref|ZP_01049705.1| glucose inhibited division protein A [Dokdonia donghaensis MED134]
 gi|85818517|gb|EAQ39677.1| glucose inhibited division protein A [Dokdonia donghaensis MED134]
          Length = 625

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 381/623 (61%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   +YDVIV+G GHAGCEAAA AA +G+ST L+T    TI  MSCNPA+GG+ KG +VR
Sbjct: 3   LFQDTYDVIVVGAGHAGCEAAAAAANMGSSTLLVTMNLQTIAQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 63  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLRLEGTPNLDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E N +  +       +R  +VVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 123 QEMVSGLLVENNKVVGVTTSLGIKVRGRSVVLTNGTFLNGLIHIGEKQFGGGRAGERAAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
            +    + F FD+GR+KTGTP R+DG+++ + K   Q  D+    FS+  +      Q  
Sbjct: 183 GITEQLLDFGFDSGRMKTGTPPRVDGRSLDFSKMIIQPGDDVPEKFSYSKETSPLTNQRP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ++ T+ E H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 243 CHMSYTSPEVHDLLREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 303 WDTCEIYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGL+ AGQINGTTGYEEAA+QGL+AG+N+  K +  +     R ++YIGV+IDDL +KG
Sbjct: 363 VSGLYFAGQINGTTGYEEAASQGLIAGMNAHLKVHDQEPFTLQRDEAYIGVLIDDLITKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP   K+G   E R     K  ++ + L    +
Sbjct: 423 TEEPYRMFTSRAEYRTLLRQDNADERLTPRSHKVGLASEERLVTMEKKREQSDNLVKFFE 482

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
              +  + +++           ++   ++  S P   ++++          D       V
Sbjct: 483 DTSILPEEVNNILEERGSSPMRQSDKMFKVFSRPQIHLEDMKQFKKVAAYIDEYSLERDV 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +I+  YA Y  ++   A +++  E   IP +FDYS L +LS E +EKLS ++P  +
Sbjct: 543 LEQAEIKVKYAGYIAKEKANADKLQRLENIKIPDNFDYSKLKSLSFEAREKLSKIRPTTI 602

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS++ G++P+ ++++L+Y+ +
Sbjct: 603 SQASRVSGVSPSDISVMLVYMGR 625


>gi|299136307|ref|ZP_07029491.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX8]
 gi|298602431|gb|EFI58585.1| glucose inhibited division protein A [Acidobacterium sp. MP5ACTX8]
          Length = 697

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/687 (42%), Positives = 386/687 (56%), Gaps = 74/687 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DV+++G GHAGCEAA  AA++G  TAL T     I  MSCNPAIGG+ KGHLVRE
Sbjct: 3   FSEQFDVLIVGAGHAGCEAAVAAARMGLRTALFTLNLDLIAQMSCNPAIGGVAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MG VADA GIQFR+LN  +GPAV  PR Q D+ LYR+ M+ ++ S  NL + Q
Sbjct: 63  VDALGGIMGEVADACGIQFRLLNTSRGPAVWSPRAQCDKALYRVKMREKLESIPNLFIKQ 122

Query: 122 GEVAGFNTE-----------------------------------KNIISSIVMQDNSMIR 146
            EV     E                                   ++ I+ + ++D   I 
Sbjct: 123 AEVIDLVIESESASQQVSEPALKGTGLSPSVQATPVVGALAPEGRHRITGVKLRDGRTIA 182

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +V++TTGTFL G+IH G+ +  AGR G+  S  L  S  K      RLKTGTP RLDG
Sbjct: 183 ARSVIVTTGTFLNGLIHCGEQQYTAGRSGEPASVLLGESLKKLGLRETRLKTGTPPRLDG 242

Query: 207 KTIIWDKTEKQFADERLIPFSFM--------TDKITNRQIECGITRTNLETHRIIMENIK 258
           +TI W K E+Q  D    PFSF         T     RQI C I  T  ET ++I +N+ 
Sbjct: 243 RTIDWGKFEEQPGDTDPTPFSFRSAPTDGEPTWTPPLRQISCHIATTTPETLQLIRDNVH 302

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
            S +++G I+  GPRYCPSIEDKIVRF ++  HQ FLEPEGLNT  VY NG+ST+LP E+
Sbjct: 303 RSPMFTGQIEGIGPRYCPSIEDKIVRFPDKTSHQFFLEPEGLNTHEVYINGMSTSLPMEV 362

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   + +IPGLE   ++RPGYAIEYD I+P EL  TL  KK  GL+LAGQINGT+GYEEA
Sbjct: 363 QAAMVHSIPGLENAEMLRPGYAIEYDAIDPTELDRTLRVKKFEGLYLAGQINGTSGYEEA 422

Query: 379 AAQGLVAGINSARKSNKL-DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           A QGL+AGIN+A  +    +     RT++Y G++IDDL SKG  EPYRMFTSRAE+R+ L
Sbjct: 423 ACQGLMAGINAALHAKGTAETFTLDRTEAYTGILIDDLISKGTDEPYRMFTSRAEFRLHL 482

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL-------SS 490
           R DNAD RLTP G +LG I +     F            LL++  LT  +L       SS
Sbjct: 483 RIDNADVRLTPHGRQLGLIDDTAWDNFEAKQARAAAFTRLLETTRLTDGDLQALEALSSS 542

Query: 491 TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----------CPDARKFSSLVIER---- 535
              + +   +     + L  P  +I+ L  +            P     ++    +    
Sbjct: 543 EPSAAQTYTRGDLFSQLLKRPAITIEQLLPLLVTRMGAISEFAPWLSALTAANYPQTLPA 602

Query: 536 --------LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
                   ++    +A Y  +Q    + ++ +E R IP  FDY +   LS E+ EKLS +
Sbjct: 603 WVRNEMKTVETGIKFAGYLAQQQRSMERLRKDEARAIPDWFDYRACSGLSREMVEKLSRV 662

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIK 614
           +P  L QAS++ G+TPAA+ L+   ++
Sbjct: 663 RPSTLGQASRMSGVTPAAVTLIQCLLE 689


>gi|317177029|dbj|BAJ54818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F16]
          Length = 621

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/626 (44%), Positives = 375/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVLGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPHFSYKTKNFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNA  RL     +LG + E   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNALFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNDRVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|109947998|ref|YP_665226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter acinonychis str. Sheeba]
 gi|123066121|sp|Q17VU9|MNMG_HELAH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|109715219|emb|CAK00227.1| glucose inhibited division protein A [Helicobacter acinonychis str.
           Sheeba]
          Length = 621

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/621 (44%), Positives = 371/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA T LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGAKTHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ GK+I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGKSINFEGLEEHFGDTNPPYFSYKTKNFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPTTHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEETIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL      LG + +   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYHLGLMEKDFYKELKKDKQEIQENLKRLKEC 480

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT        +S              + L+   FS++ + S        S  V+E+++I
Sbjct: 481 VLTPSKEVLKRLSELDENPINDKINGVDLLARDSFSLEKMRSFFSFLAPLSERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|124024586|ref|YP_001018893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9303]
 gi|166222717|sp|A2CDR8|MNMG_PROM3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123964872|gb|ABM79628.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9303]
          Length = 653

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/637 (42%), Positives = 382/637 (59%), Gaps = 20/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TEHFDVIVVGGGHAGCEAALTAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRLYSRQMLQLLQQTANLSLREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   + +                 I+ +     S+ R   VVLTTGTFL G I +G 
Sbjct: 128 MVTGLEVKGDPSGGGEHWEPAQGHAAQITGVRTYFGSIYRAQAVVLTTGTFLGGQIWVGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             +PAGR G+  +  L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     F
Sbjct: 188 QSMPAGRAGEQAAEGLTEALESLGFQTNRLKTGTPARVDRRSIALDQLEEQPSDAADRFF 247

Query: 227 SFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF  T  ++  Q+ C ITRT   TH++I EN++ + IY G + S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPTTWVSGEQMSCHITRTTASTHQLIKENLELTPIYGGFLDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE +Q   +RT+PGLE+  ++RP YA++YDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEIYVQGFSTGLPERLQLDLLRTLPGLEQCIMLRPAYAVDYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +L P+L+TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR  +  + + F R  
Sbjct: 368 LPATQLSPSLQTKRVKGLFTAGQLNGTTGYEEAAAQGLVAGLNAARLVHGQEQVHFPREG 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I  RR + F 
Sbjct: 428 SYIGTMIDDLVSKDLHEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQ 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSIC 522
                    +  L+   + + + ++ ++  K   K   + T  + L  P     +L    
Sbjct: 488 SKQTALEDEKQRLEKQRIKASDPAAPALEAKTGAKIKGSITLADLLRRPGVHSADLIEHG 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
               + +  V E  +I+  Y+ Y  RQ  +  ++K + +R +P + DY+++  LS E +E
Sbjct: 548 LVDPELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+ + P N  QAS+I G++ A L  LL++++    +
Sbjct: 608 KLTAVGPLNFAQASQIPGVSKADLTALLVWLELQKRR 644


>gi|260428764|ref|ZP_05782741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citreicella sp. SE45]
 gi|260419387|gb|EEX12640.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citreicella sp. SE45]
          Length = 622

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/580 (52%), Positives = 408/580 (70%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T   + IG MSCNPAIGGLGKGHLVREIDA+DG+MGRVAD AGIQFR+LN 
Sbjct: 26  RMGAKTALVTLTEAGIGVMSCNPAIGGLGKGHLVREIDAMDGVMGRVADRAGIQFRLLNR 85

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KGPAV+GPR QADR++YR  MQRE+    NL V++GEV         +  +V+ D S +
Sbjct: 86  RKGPAVQGPRAQADRKIYRETMQREMRGTPNLTVVEGEVVDLLLNGRTVGGVVLDDGSEL 145

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           + S VVLTTGTFLRGVIHIG    P GRMGD PS  L     +   + GRLKTGTP RLD
Sbjct: 146 KASAVVLTTGTFLRGVIHIGDKSRPGGRMGDRPSVRLAERIDELGLELGRLKTGTPPRLD 205

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI WD+ E+Q  DE  + FSF++      Q+ CGIT TN  TH II EN+  SA+Y G
Sbjct: 206 GRTIAWDQLEEQPGDEDPVLFSFLSAAPYAHQVSCGITHTNERTHEIIRENLDRSAMYGG 265

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   +YPNGIST+LPE++Q  ++R+
Sbjct: 266 HIEGIGPRYCPSIEDKVVRFSDKLSHQIFLEPEGLDDHTIYPNGISTSLPEDVQVDYVRS 325

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I++PGYAIEYD+++P+ L   L  + +SGLFLAGQINGTTGYEEA+AQGLVA
Sbjct: 326 IFGLENAVILQPGYAIEYDFVDPRSLDLRLAVRNVSGLFLAGQINGTTGYEEASAQGLVA 385

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A ++   D + F R+DSYIGVM+DDLT++GV EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 386 GLNAAAEALGRDPVQFGRSDSYIGVMVDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQR 445

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  ++LGC+   R+  F + ++     R +L++     + L    +    DG+ R  +
Sbjct: 446 LTPKAIELGCLSNERRASFERKMERLAQGRKMLETRQFAPRTLVDMGLQVAPDGQKRNGF 505

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + L++PD ++  L S  P   +    +  +L+ ++ YA Y  RQ  + + ++ +E  +IP
Sbjct: 506 QLLAFPDVTMSTLVSGEPSFSEIDPEIALQLERDALYANYIERQKRDVEALRRDEAMVIP 565

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
           +DFD++++  LSNELK KLS+ +P NL QA  ++GMTPAA
Sbjct: 566 RDFDFAAVEGLSNELKHKLSLARPENLAQAGNVDGMTPAA 605


>gi|83815019|ref|YP_444213.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salinibacter ruber DSM 13855]
 gi|123529872|sp|Q2S6G8|MNMG_SALRD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83756413|gb|ABC44526.1| glucose-inhibited division protein A [Salinibacter ruber DSM 13855]
          Length = 664

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/636 (43%), Positives = 397/636 (62%), Gaps = 21/636 (3%)

Query: 2   INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +++ Y   DVIV+GGGH+G EAAA AA +GA T LIT K + IG MSCNPAIGG+GKGH+
Sbjct: 1   MHQDYFEHDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            REIDAL G+MG+  D AGIQFR+LN  KGPAV GPR Q  R  Y  A+++E+ + +NL 
Sbjct: 61  AREIDALGGIMGKATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLK 120

Query: 119 VIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +    V    T+     ++ +        R   VVLTTGTF  GVIH+G+     GR+G+
Sbjct: 121 MRSDMVKEILTDDAGETVTGVRTNLGKEFRAPCVVLTTGTFSNGVIHVGEQNFGGGRIGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
           S S+ +        F++GRLKTGTP R+DG++I +   EKQ  D     FSF+TD +   
Sbjct: 181 SASHGITGCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSV 240

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T T  ETH ++      S +++G + + GPRYCPSIEDKI RF E++ HQ+F
Sbjct: 241 EAQLSCWLTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLF 300

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +EPEG +T  VY NG S++LPEE+Q + +RT+PG+E+ ++ RPGYAIEYD+  P ++  +
Sbjct: 301 IEPEGRDTHEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYS 360

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK + GLF AGQINGTTGYEEAAAQG++AGIN+ +K  + D I   R+++YIGV+IDD
Sbjct: 361 LETKYVDGLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDD 420

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KG  EPYRMFTSRAE+RI LR DNAD RLT +G KLG   + R  R  +  +  +  
Sbjct: 421 LVAKGTDEPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVT 480

Query: 475 RSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           R  L    ++ + +     S+      + R   E    P+   ++L         +  +V
Sbjct: 481 RETLSDTTVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLRHAGL---YDEVV 537

Query: 533 IER---------LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            E          ++I+  Y  Y  RQ    +E++ +E+  IP DFDY +L  +S E ++K
Sbjct: 538 TEAPGMLSAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQK 597

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           LS ++P NL QAS++ G+  + +++L++ +K   V+
Sbjct: 598 LSKVEPDNLGQASRVPGVRASDISVLMVLLKNEGVE 633


>gi|126463650|ref|YP_001044764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides ATCC 17029]
 gi|166199725|sp|A3PNS6|MNMG_RHOS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126105314|gb|ABN77992.1| glucose inhibited division protein A [Rhodobacter sphaeroides ATCC
           17029]
          Length = 621

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/620 (53%), Positives = 422/620 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAGCEAAA AA++G   ALIT + S +G MSCNPAIGGLGKGHLVREID
Sbjct: 2   KHFDVVVIGGGHAGCEAAATAARMGVQVALITLRKSGLGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGR AD AGIQFR+LN KKGPAV+GPR QADR LYR A+QR +  Q  L +I+GE
Sbjct: 62  ALDGIMGRAADEAGIQFRLLNRKKGPAVQGPRAQADRRLYREAVQRLLAEQPGLTIIEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  + + D + +    V+LT+GTFL GVIHIG  + P GRMGD PS  L 
Sbjct: 122 VVDLQVNGGRVQGVSLADGTSVGAGRVILTSGTFLNGVIHIGDQRRPGGRMGDDPSQRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG+TI W + E Q  DE  + FSF+      RQI CGIT
Sbjct: 182 AVLGELSLARGRLKTGTPPRLDGRTIRWAELEMQPGDEDPVVFSFLNRVPKARQIACGIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D
Sbjct: 242 HTNARTHQIVRDNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP E+Q  ++RTI GLE V I++PGYAIEYDY +P+EL PTLE K + GL
Sbjct: 302 TVYPNGISTSLPAEVQEAYVRTIAGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL AG+N+A    + + + FSR+ SY+GVMIDDLTS+GV EP
Sbjct: 362 YFAGQINGTTGYEEAAAQGLAAGLNAALSIREREPLHFSRSGSYLGVMIDDLTSRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F K  +     R+LL+    
Sbjct: 422 YRMFTSRAEFRLSLRADNADQRLTPIGLDLGCVSDARRESFNKKRELLEKGRALLEGSSF 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I   QDG  RTA+  +++ + +   +             + ++L  +  YA
Sbjct: 482 TPSQLNELGIQVSQDGMRRTAFAVMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYA 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  EA  +K +E   IP DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP
Sbjct: 542 QFILRQEEEAAALKRDEAIRIPADFDYAPLSGLSSELKAKLMRARPSTIAQAAQLEGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNEI 623
           +AL L+L  +++       +
Sbjct: 602 SALTLILARLRRAGRDAAAV 621


>gi|320103472|ref|YP_004179063.1| glucose inhibited division protein A [Isosphaera pallida ATCC
           43644]
 gi|319750754|gb|ADV62514.1| glucose inhibited division protein A [Isosphaera pallida ATCC
           43644]
          Length = 619

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/620 (44%), Positives = 378/620 (60%), Gaps = 18/620 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+VIGGGHAG EAA  AA++G  TAL+T     +G MSCNPAIGG+GKG + R
Sbjct: 1   MSPNRFDVVVIGGGHAGIEAALAAARMGCRTALLTLNVDAVGQMSCNPAIGGVGKGQIAR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + DA+ IQ+R+LN  KGPA+ GPR Q D++LY++  +  +  QE L + 
Sbjct: 61  EIDALGGAMGLITDASAIQYRLLNRGKGPAMHGPRAQCDKKLYQITAKETVERQERLTLR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  +     E+  +  ++ +   +     VVLTTGTFL+ ++H G+LK   GR GD  + 
Sbjct: 121 QESIEAVRVEQGKVVGVLCRGGVVYEARAVVLTTGTFLQALMHTGELKTAGGRAGDPAAQ 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S      +  R KTGTP RL+G+TI + + E+Q  D+    FS +T  +   Q+ C
Sbjct: 181 GLSSSLRALGIELRRFKTGTPPRLNGRTINFRRLEEQPGDDDPTFFSSLTTALNGPQMVC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN + H +I  N+  + +Y G I S GPRYCPSIEDK+VRFG+R+ HQIFLEPEG 
Sbjct: 241 HLTATNEQVHDLIRANLHRAPMYCGQIDSRGPRYCPSIEDKVVRFGDRSSHQIFLEPEGR 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NGIST+LP ++Q   I  IPGLE   I+R GYA+EYDY  P +L  +LE K+ 
Sbjct: 301 RTLEYYCNGISTSLPRDVQEAIIPLIPGLEHAEIMRFGYAVEYDYAPPTQLRASLEVKEW 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGLVAGIN+A      +     R+ +YIGV+IDDL +KGV
Sbjct: 361 PGLFLAGQINGTTGYEEAAAQGLVAGINAALSVQNREPFILDRSQAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R++LR DNAD RLT +G +LG + E R + F + ++    L   L++
Sbjct: 421 DEPYRMFTSRAEFRLALRYDNADLRLTELGRRLGLVDELRWRTFQERVERMERLGERLRT 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERLQI 538
                         FK DG+  T    L  P  + + L ++ P+          +     
Sbjct: 481 --------------FKVDGE--TLERRLRRPTTTWEELRALDPELPAEASDPSSVRHWLA 524

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  RQ  + ++ +  E + IP+D DY +L  L +E +EK +  +P    QA +I
Sbjct: 525 ELKYDGYLVRQRDQVEKFRRWEDKPIPEDLDYDALTQLRHEAREKFAATRPVTFGQAGRI 584

Query: 599 EGMTPAALNLLLIYIKKNTV 618
            G+ PA L +LL+Y+KK  +
Sbjct: 585 SGVAPADLAVLLVYLKKGGL 604


>gi|307721845|ref|YP_003892985.1| glucose inhibited division protein A [Sulfurimonas autotrophica DSM
           16294]
 gi|306979938|gb|ADN09973.1| glucose inhibited division protein A [Sulfurimonas autotrophica DSM
           16294]
          Length = 637

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/636 (42%), Positives = 380/636 (59%), Gaps = 21/636 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EA+  +A++G  T L++     +G+ SCNPA+GGL KGHLVRE+DA
Sbjct: 2   DYDVIVVGGGHAGIEASLASARMGNKTLLVSMLAENVGATSCNPAVGGLAKGHLVRELDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D AGIQFR+LN  KGPAVRG R Q D + YR+  +  +L   NLD+ Q  V
Sbjct: 62  LGGEMGLITDEAGIQFRILNQTKGPAVRGSRAQIDMDKYRVIARNVVLGTPNLDLAQDTV 121

Query: 125 AGFNTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                E  +             +  +V    +  R + V++T+GTFL G+IH+G+++   
Sbjct: 122 ESLIIEDKVNSEAREGTLGCKEVKGVVTTLLNEYRANKVIITSGTFLNGIIHVGEVQQIG 181

Query: 172 GRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           GR G+  S  L  S       +  RLKTGT AR+D  +I +   E+Q  DE   PFSF T
Sbjct: 182 GRYGEQRSVGLSASLKNDCGLNIARLKTGTCARIDSSSIDFSVMEEQGGDELPNPFSFRT 241

Query: 231 DK----ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           D+     T  Q+ C I  TN  TH+II  N   + +++G I    PRYCPSIEDKI +F 
Sbjct: 242 DREKFRATKEQLPCYIAYTNETTHKIIESNFYRAPLFTGQIAGKSPRYCPSIEDKIDKFP 301

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +++ H +FLEP+ +    +Y NG+ST+LP E+Q   I ++ G+E   I+R GYAIEYD++
Sbjct: 302 DKDRHHLFLEPQTMENTEIYVNGMSTSLPPEVQRDMIHSVQGMENAKIVRYGYAIEYDFV 361

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P+EL  +LETKKI GL+LAGQINGTTGYEEAAAQG++AGIN+       + +   R ++
Sbjct: 362 DPRELKHSLETKKIKGLYLAGQINGTTGYEEAAAQGIMAGINAGLALQGKEPLILRRDEA 421

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDL +KG  EPYRMFTSRAEYR+ LR ++AD RL   G +LG + +   +R   
Sbjct: 422 YIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREESADVRLGHYGHELGLVSDEEYERIKL 481

Query: 467 YIQEYNFLRSLLKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
             Q+      LL+    T     N    S+  +      TA + ++   F ++ +  I P
Sbjct: 482 KAQQIREGAQLLEETKFTPNKEFNALLASMDEQPLKDVSTAQQLVARKTFDVEKMIKIVP 541

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +  K+   + + + +E  YA Y  +Q  E + +K   K  IP+DFD+S +  LSNE++EK
Sbjct: 542 ELDKYDDYIKDEILVEGKYARYVDKQSQEIERMKKYLKIAIPQDFDFSIVSGLSNEIQEK 601

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           L+   P  L  A  I G+TPAA+ +L IYIK    K
Sbjct: 602 LAEFNPPTLQAAMNISGITPAAIEILHIYIKMAKRK 637


>gi|255529925|ref|YP_003090297.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter heparinus DSM 2366]
 gi|255342909|gb|ACU02235.1| glucose inhibited division protein A [Pedobacter heparinus DSM
           2366]
          Length = 620

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/620 (44%), Positives = 379/620 (61%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MFKEYDVIVVGGGHAGCEAAAAAANLGSSVLLITMNMETIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G  G ++D   +QFR+LN+ KGPA+  PRTQ DR+ +    +  +    N+D  Q
Sbjct: 61  IDAMGGYSGIISDKTTLQFRMLNLSKGPAMWSPRTQNDRKRFAEEWRLALERTPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + N +  +       I+   VVLT GTFL G+IHIG+ K   GR G+  +  
Sbjct: 121 DMVGSLLIKDNRVIGVKTAIGVEIKGKAVVLTNGTFLNGLIHIGEKKFGGGRTGEKAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L      F F+ GR+KTGTP R+DG+++ +   E+Q+ DE    FSF   ++   Q  C 
Sbjct: 181 LTEQLTAFGFEAGRMKTGTPPRVDGRSLNYSLMEEQWGDENPGRFSFTNAELPKEQRCCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN   H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG N
Sbjct: 241 ITYTNANVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGWN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q++ +  IPG E   + RPGYAIEYDY  P +L  TLETK IS
Sbjct: 301 TCEIYVNGFSTSLPEDVQYRALTQIPGFENAKMFRPGYAIEYDYFPPTQLSLTLETKLIS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA+QG +AGIN+ +K +    +   R++SYIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAASQGFIAGINAHQKVSGQQELIMKRSESYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RL+PI  KLG I + R     + I+  + + +  K  
Sbjct: 421 EPYRMFTSRAEHRLLLRQDNADIRLSPIAHKLGLISDERLDIVNQKIKNSDTIVAFAKKQ 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSLVIER 535
            +   N +S    +      +    +  LS P   + ++  +         +F    IE+
Sbjct: 481 GIEMNNANSMLEELGTTPLNQNVKLFSLLSRPQVGMNDVRKVSEPLEGLLKQFDKETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y +Y  ++     +++  E + I  +FDYS L +LS E +EKL  +KP  L QA
Sbjct: 541 AEIKIKYESYFEKEQEIVNKMQKMEDKDINPNFDYSQLVSLSKEAREKLLKIKPRTLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+++I K
Sbjct: 601 SRISGVSPSDISVLMVHISK 620


>gi|310778408|ref|YP_003966741.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
 gi|309747731|gb|ADO82393.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
          Length = 628

 Score =  710 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/623 (43%), Positives = 382/623 (61%), Gaps = 12/623 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DVIV+G GHAGC+AA  AA++G  TA+ T     IG MSCNP+IGG  K HLV+EID
Sbjct: 2   HNFDVIVVGAGHAGCDAALAAARMGMKTAIFTITLDNIGVMSCNPSIGGPAKSHLVKEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ R+LN KKGPAVR  R QAD++LY + M++ I + +NL+ IQG 
Sbjct: 62  ALGGEMGRNIDKTFIQMRILNTKKGPAVRSLRAQADKQLYHMEMKKTIENTDNLESIQGM 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   I  +  +     R   V++ +GTF+RG+IH+G  +   GRMG+ PS+ L 
Sbjct: 122 VTEVLVEDGKIVGVKTKVGVEYRAKAVIIASGTFMRGLIHVGDKQFRGGRMGELPSDELP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS---FMTDKITNRQIEC 240
            S  K     GR KTGTP R+D +TI + K E+Q  D+ L+ FS     ++    +QI C
Sbjct: 182 ISLEKIGLKLGRFKTGTPPRIDARTIDYSKIEEQPGDKELLKFSDRTPYSEIEGRKQIPC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I  TN + H  I+++   S +++G I+  GPRYCPSIEDK+ R+ ++  H +FLE EG 
Sbjct: 242 HIVFTNEKVHETILKSKSRSPLFNGTIQGTGPRYCPSIEDKVFRYQDKTRHHLFLEKEGY 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY +G S++LP ++Q++ +R I GLE   I+R  YAIEYDYI P+EL  +LETKKI
Sbjct: 302 GTNEVYISGFSSSLPSDVQYEMLRKIEGLENAKIMRYAYAIEYDYILPEELKFSLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGT+GYEEAA+QGL+AGIN++RK    D +   R DSYIG +IDDL +KG 
Sbjct: 362 DGLYLAGQINGTSGYEEAASQGLIAGINASRKIQGKDPVVLDRADSYIGTLIDDLVTKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + +   +R  K   E   +   L+ 
Sbjct: 422 NEPYRMFTARSEYRLMLREDNADLRLSKIGYEIGLLQKEDYERVLKKENETAEIIEKLEL 481

Query: 481 LVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSL 531
             + S N     +  K          T  E L  P  + Q++  +       D   +S  
Sbjct: 482 QYVGSSNERVNEVLEKAKEPALKSGTTLKELLRRPRVTFQDIKYVAELVENFDLDGYSKD 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
              + +++  YA Y  R +   ++ K  E + IP DFDY ++  L  E KEKL  +KP N
Sbjct: 542 AEYQAEVQVKYAGYIERSLKMIEKHKAIEGKKIPDDFDYETVSGLPREAKEKLKGVKPMN 601

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           + QAS+I G++PA + +LLI +K
Sbjct: 602 IGQASRISGVSPADIQVLLINLK 624


>gi|298372104|ref|ZP_06982094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275008|gb|EFI16559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 625

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/622 (41%), Positives = 365/622 (58%), Gaps = 11/622 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+IVIG GH+GCEAAA A+ LG+   L+T   + I  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   SYDIIVIGAGHSGCEAAAAASNLGSKVLLLTMDMNNIAQMSCNPAVGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V D   IQFR+LN  KG A+  PR+Q+DR  Y    +  + S  NLD+ Q  V
Sbjct: 64  LGGYMGIVTDDTSIQFRMLNRSKGAAMWSPRSQSDRAKYIQRWRELLDSCPNLDIRQDVV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F  +   +  +  +         V+LT+GTFL G++H GK+++  GR+ ++ S  L  
Sbjct: 124 TEFIIKDGTVQGVKTRLMCEFGAKCVILTSGTFLNGLMHFGKIQVAGGRISETASYGLTE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              +  F TGR+KTGTP R++G +I + +  +Q  ++    FSF+   K T RQ  C +T
Sbjct: 184 QLREVGFVTGRMKTGTPLRINGNSIDFSRLTQQNGEDDFHKFSFLVRGKNTLRQRPCYLT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH I+  +I  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+F+EPEG  T 
Sbjct: 244 HTNTRTHEILNRHIDESPLYNGQIQSIGPRYCPSIETKIVTFADKTSHQLFIEPEGETTQ 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y NG S++LP E+Q + + TI GLE+  I RPGYAIEYDY +P +L  TLETK +  L
Sbjct: 304 EYYLNGFSSSLPIEVQLEALHTIEGLEQARIYRPGYAIEYDYFDPVQLKNTLETKLVKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAA QGL+AGIN+             R ++YIGV+IDDLT+KGV EP
Sbjct: 364 FFAGQVNGTTGYEEAAGQGLIAGINAHINCFGGKEFVLRRDEAYIGVLIDDLTTKGVDEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSR+EYRI LR D+AD+RLT     LG     R+K         + L S  K   +
Sbjct: 424 YRMFTSRSEYRIILRQDSADSRLTRKSFDLGLATTERKKLLDVKNDNIDGLLSYFKQRSV 483

Query: 484 TSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS--------LVI 533
               ++            K    Y+ L  P+ +I  +    PD R+ +          ++
Sbjct: 484 LPAEINGLLEKTGATPISKKTKLYDLLLRPNITIGAMCETLPDVREQADKVDQSRVEEIL 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E  +I   Y  Y  R+ + A +    E   IP++ +Y  + +LS E ++KL    P  + 
Sbjct: 544 EEAEIVVKYGGYIDRERLIANKTNRLEYVNIPQEINYDDIQSLSTEARQKLKKHLPQTIG 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +N+L++ + +
Sbjct: 604 QASRIPGVSPSDINVLIVMLGR 625


>gi|296329306|ref|ZP_06871807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153662|gb|EFG94479.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 633

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKIIKGIKIREGLEYRAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K      R KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D ++ 
Sbjct: 182 EELPLSLEKIGLKLERFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKKKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K          T  E L  P+ S +++  I       D +
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRRENPIKDGSTLLELLRRPEVSFEDIKYISEEIRGIDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|163757464|ref|ZP_02164553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hoeflea phototrophica DFL-43]
 gi|162284966|gb|EDQ35248.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hoeflea phototrophica DFL-43]
          Length = 622

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/599 (58%), Positives = 440/599 (73%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAAA +A++G  T L+THK  +IG MSCNPAIGGLGKGHLVRE+DA
Sbjct: 2   DYDVIVIGGGHAGSEAAAASARMGVRTVLVTHKRKSIGVMSCNPAIGGLGKGHLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLMG  AD +GIQFR+LN +KGPAV GPRTQADR+LY+ ++Q ++ + +NLDVI+ E 
Sbjct: 62  MGGLMGLAADQSGIQFRMLNRRKGPAVWGPRTQADRKLYKASIQAQLSAIDNLDVIEAEA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   +    + +V++D   I C  VVLTTGTFLRG+IHIG  +IPAGRM ++P+    N
Sbjct: 122 DGLVQDGQGPTHVVLKDGRQIGCKAVVLTTGTFLRGLIHIGDQRIPAGRMNEAPALGFSN 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F+ GRLKTGTPARLDGKTI WD+   Q AD   IPFSFMTD I   QI CGITR
Sbjct: 182 VLENAGFELGRLKTGTPARLDGKTIDWDQVGWQEADAEPIPFSFMTDHIEVPQIRCGITR 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH+II +NI  SA+YSG I+  GPRYCPSIEDKIVRFGER+GHQIFLEPEGL+ D 
Sbjct: 242 TTAATHKIIQDNIHRSAMYSGQIEGVGPRYCPSIEDKIVRFGERDGHQIFLEPEGLDDDT 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNG+ST+LPEE+Q  F+R+IPGL+ V II+PGYAIEYD+++P+EL  TLET++I GLF
Sbjct: 302 VYPNGVSTSLPEEVQEAFLRSIPGLQDVRIIQPGYAIEYDHVDPRELSHTLETRRIPGLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+A      +   FSRT+SYIGVMIDDLT+KGV EPY
Sbjct: 362 LAGQINGTTGYEEAAAQGLVAGLNAALLVQGRESCLFSRTNSYIGVMIDDLTTKGVSEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNA+ RLTP+ ++LGC+   R ++ A Y    +   + L +  LT
Sbjct: 422 RMFTSRAEYRLSLRADNAEQRLTPLAIELGCLSSERVEKSATYFDSLSKCLADLNARNLT 481

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +S  IS  QDG  R+A++ LSYP+ S++ + S+ PD   +   V+    ++++YA 
Sbjct: 482 PNQAASRGISLNQDGLRRSAFQLLSYPEVSLEQILSVWPDLEVYGDKVLAAAAVDAAYAV 541

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +  + + EE R IP DFDY  L  LSNELK+KL   +P ++  A +IEGMTP
Sbjct: 542 YLDRQQQDIAQRQKEEARAIPADFDYGVLNGLSNELKQKLERFRPPSIGHAERIEGMTP 600


>gi|260061290|ref|YP_003194370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Robiginitalea biformata HTCC2501]
 gi|88785422|gb|EAR16591.1| glucose-inhibited division protein A [Robiginitalea biformata
           HTCC2501]
          Length = 624

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/622 (42%), Positives = 380/622 (61%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAGCEAAA AA LG+ T L+T    TIG MSCNPA+GG+ KG +VR
Sbjct: 3   MFTEEYDVIVVGGGHAGCEAAAAAANLGSKTLLVTMNLQTIGQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PRTQ DR  +    +  +   ++LD  
Sbjct: 63  EIDALGGYSGIVSDRSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLSLERTQHLDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+     ++ +  +       IR  +VVLT GTFL G+IHIG+ +   GR G+  + 
Sbjct: 123 QEMVSDLIVSEDRVVGVRTSLGLEIRGRSVVLTNGTFLNGLIHIGEKQFGGGRAGERAAR 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +     +  FDTGR+KTGTP R+DG+++ + K   Q  D     FS++      RQ EC
Sbjct: 183 GITEQLAEMGFDTGRMKTGTPPRVDGRSLDFSKMIPQPGDAEPGRFSYLDTPKLTRQREC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+ E H ++ME    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 243 HMTYTSPEVHELLMEGFDRSPMFNGRIQSIGPRYCPSIEDKIHRFKDKDRHQLFVEPEGW 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK I
Sbjct: 303 DTVEVYVNGFSTSLPEDVQFRALRSVAGFENVKFFRPGYAIEYDYFPPTQLRHTLETKLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGTTGYEEAA+QGL+AGIN+  K N+ +     R ++YIGV+IDDL +KG 
Sbjct: 363 ENLYFAGQINGTTGYEEAASQGLMAGINAHLKLNEKEPFILRRDEAYIGVLIDDLITKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLT    ++G   E R +   +   +   L    K 
Sbjct: 423 EEPYRMFTSRAEYRTLLRQDNADLRLTEKSFRMGLASEERMRAVEQKKAQSQDLVGFFKK 482

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVI 533
                + ++    ++  K   +    ++  S P   ++++  +          +    V+
Sbjct: 483 TSFVPEEINPILETVGSKNVDQGDKLFKVFSRPQVQMEHMMQLESVSEYVRENQLGQEVL 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +IE  Y+ Y  ++   A +++  E   IP+ FDYS + +LS E +EKL  ++P  L 
Sbjct: 543 EQAEIEVKYSGYIEKEKNNADKLQRLENVKIPEGFDYSQVKSLSYEAREKLGRIRPATLS 602

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS++ G++P+ +++L++++ +
Sbjct: 603 QASRVSGVSPSDISVLMVFLNR 624


>gi|261368858|ref|ZP_05981741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Subdoligranulum variabile DSM 15176]
 gi|282569044|gb|EFB74579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Subdoligranulum variabile DSM 15176]
          Length = 630

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 378/621 (60%), Gaps = 3/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+G GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KGHLVRE+DA
Sbjct: 6   NYDVIVVGAGHAGIEAAHAAAVLGAKTAVFTLTLDFIGNMPCNPSIGGTAKGHLVREVDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG  ADA  +Q R+LN  KGPAV   R Q DR+ Y + M+  +    NLD+ Q E+
Sbjct: 66  LGGLMGIAADATFLQSRMLNRGKGPAVHSLRVQTDRKRYHIWMKHALEKTANLDIHQAEI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G + +   I  +V        C   V+ TGT L G I +G+     G  G   +  L  
Sbjct: 126 VGVDVQDGRIVGVVTALGGYYGCKACVIATGTTLGGRIFVGEAHYDGGPDGTHAATQLTK 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGI 242
           S +   F   R KTGTPAR+  ++I + K E Q  D  E L PFSF+T    + ++ C I
Sbjct: 186 SLVSHGFTLRRFKTGTPARVHRRSIDFSKLECQPGDPDELLQPFSFLTRTPMHNKVNCYI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN +TH++I++N+  S +Y GDI+  GPRYCPSIEDK+VRF ++  H +F+EP G +T
Sbjct: 246 AYTNPQTHQVILDNLDRSPLYGGDIQGVGPRYCPSIEDKVVRFKDKQRHPVFVEPCGEDT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G+S++LPE +Q+   RTI G E + I+RP YAIEYD ++P  L PTLE+K ++G
Sbjct: 306 EEMYLQGLSSSLPEAVQNAMYRTIVGFEHLEIMRPAYAIEYDCVDPTTLKPTLESKVVAG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ NGT+GYEEAAAQGL+AG+N+AR +     +  +R  SY+G ++DDL +KGV++
Sbjct: 366 IYGAGQFNGTSGYEEAAAQGLLAGLNAARHALGKSELVLARHTSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+SLR DNAD RLTPIG + G + + R   F +           L++  
Sbjct: 426 PYRMMTSRSEYRLSLRQDNADERLTPIGREYGLVDDERWAVFCRDRDIKQAELKRLENAH 485

Query: 483 LTSKNLSSTSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +   +L +      + G++  TA E +  P  + + + ++       +  + +R++ E  
Sbjct: 486 IKLADLRAVVPEGTELGESGGTAAELMRRPAVTYERIAAVIGRGEGVTPAMAQRIETEIR 545

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  R+    ++I+  E+  IP+DFDY+ +  ++ E +EKLS ++P  L QA +I G+
Sbjct: 546 YAGYIAREERIIRDIQRHEQVAIPEDFDYAPIETMTLEAREKLSKIRPRTLAQAGRIPGV 605

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
           +P+ L  L I + K   +  E
Sbjct: 606 SPSDLAQLSIALLKTRSQQKE 626


>gi|19705044|ref|NP_602539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|22095722|sp|Q8RI88|MNMG2_FUSNN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 2; AltName: Full=Glucose-inhibited division
           protein A 2
 gi|19712960|gb|AAL93838.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 633

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/628 (43%), Positives = 377/628 (60%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    +   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEENGKKIIKGIKIREGLEYKAKAVIIATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K      R KTGTP R+DG+TI +   E+Q  D  +++ FS  T   D ++ 
Sbjct: 182 EELPLSLEKIGLKLERFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTKDEDALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDKI R+ ++N H +FL
Sbjct: 242 RQISCYIAHTNEKVHEIIRNAKERSPLFNGTIQGLGPRYCPSIEDKIFRYPDKNQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + +   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPVILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKIIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   N     I  K          T  E L  P+ S +++  I       D +
Sbjct: 482 EILAKTNVGPSNPRVNEILLKRGENPIKDGSTLLELLRRPEVSFEDIKYISEEIRGIDLQ 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|297379438|gb|ADI34325.1| glucose-inhibited division protein A [Helicobacter pylori v225d]
          Length = 624

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/628 (44%), Positives = 377/628 (60%), Gaps = 13/628 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG RTQ D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRTQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPIQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +AS+I G+TPA L++L +YI    ++ N
Sbjct: 596 EASEISGITPANLDVLHLYIHLRHLRKN 623


>gi|57239374|ref|YP_180510.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58579341|ref|YP_197553.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81170539|sp|Q5HAN4|MNMG_EHRRW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57161453|emb|CAH58378.1| glucose inhibited division protein A [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417967|emb|CAI27171.1| Glucose inhibited division protein A [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 625

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/622 (47%), Positives = 412/622 (66%), Gaps = 5/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGH+GCEAAA AA++GA T LITH  STIG MSCNPAIGG+ KG +VRE+D
Sbjct: 2   KKYDVVVIGGGHSGCEAAAAAARIGAKTLLITHSISTIGEMSCNPAIGGIAKGIVVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+V D A I   +LN  KGPAV GPR QADR+LYR AMQ  IL+  NL V++  
Sbjct: 62  ALDGLMGKVIDNASINSTILNRSKGPAVWGPRAQADRDLYRHAMQNSILNYPNLTVLEAS 121

Query: 124 VAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V  F T    E   I+S++  D  +I    ++LTTGTFL+G IHIG    PAGR  +  S
Sbjct: 122 VENFTTTDNQELPTINSVITADQEVIYTKKLILTTGTFLQGTIHIGSYNTPAGRFNEQSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +   ++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+M++ I   QI 
Sbjct: 182 VGLAKTLASYNFKLGRLRTGTPPRLDRNSINFSGLQEQKGDTPPSPFSYMSESINLPQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH +I  N+  +A  +   +   PRYCPSIE+K+ RF ERN HQ+FLEPEG
Sbjct: 242 CYLTATNTKTHEVIKNNLHKAAASNLLKEIKAPRYCPSIEEKVRRFSERNSHQVFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LN++++YPNGI+T+ P ++Q   ++TI GLE V I+R GY++EY++I+P+EL+ TLETKK
Sbjct: 302 LNSEIIYPNGITTSSPLDVQQTMLKTISGLENVKIVRSGYSVEYNFIDPRELYHTLETKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-KLDCICFSRTDSYIGVMIDDLTSK 418
           I GL+ AGQINGTTGYEEAA QG++AGIN+A   N   +     R D+YIGVMIDDL + 
Sbjct: 362 IRGLYCAGQINGTTGYEEAAGQGIIAGINAALSLNSNYEPFILKRNDAYIGVMIDDLVTL 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R     +  +E   L ++L
Sbjct: 422 GTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKVSAVSYQRYLTLNRKKEEVTKLTNIL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K  V+    LS   +   QDG+ R+A++ LS P+ ++  L  I    + + +  I++++I
Sbjct: 482 KETVILPSQLSQHGVCISQDGRKRSAFDLLSNPNINMNILSKIFNQIKNYHASTIQQVEI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ YA Y  +Q ++ +    EE   IP D ++S +  LS E++EKL  +KP ++  A +I
Sbjct: 542 EAKYAPYFIKQELDIQSFIAEENTHIPHDIEFSQIHGLSTEIQEKLQYMKPPSIGSARRI 601

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+TPAA+  +L Y++ +  K 
Sbjct: 602 PGVTPAAITNILFYLRYHKNKK 623


>gi|58617395|ref|YP_196594.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia ruminantium str. Gardel]
 gi|81170538|sp|Q5FFY7|MNMG_EHRRG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58417007|emb|CAI28120.1| Glucose inhibited division protein A [Ehrlichia ruminantium str.
           Gardel]
          Length = 625

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/622 (48%), Positives = 413/622 (66%), Gaps = 5/622 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGH+GCEAAA AA++GA T LITH  STIG MSCNPAIGG+ KG +VRE+D
Sbjct: 2   KKYDVVVIGGGHSGCEAAAAAARIGAKTLLITHSISTIGEMSCNPAIGGIAKGIVVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGLMG+V D A I   +LN  KGPAV GPR QADR+LYR AMQ  IL+  NL V++  
Sbjct: 62  ALDGLMGKVIDNASINSTILNRSKGPAVWGPRAQADRDLYRHAMQNSILNYPNLTVLEAS 121

Query: 124 VAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V  F T    E   I+S++  D  +I    ++LTTGTFL+G IHIG    PAGR  +  S
Sbjct: 122 VENFTTTDNQELPTINSVITADQEVIYTKKLILTTGTFLQGTIHIGSYNTPAGRFNEQSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +   ++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+M++ I   QI 
Sbjct: 182 VGLAKTLASYNFKLGRLRTGTPPRLDRNSINFSGLQEQKGDTPPSPFSYMSESINLPQIS 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH +I  N+  +A  +   +   PRYCPSIE+K+ RF ERN HQ+FLEPEG
Sbjct: 242 CYLTATNTKTHEVIKNNLHKAAASNLLKEIKAPRYCPSIEEKVRRFSERNSHQVFLEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LN++++YPNGI+T+ P ++Q   ++TI GLE V I+R GY++EY++I+P+EL+ TLETKK
Sbjct: 302 LNSEIIYPNGITTSSPLDVQQTMLKTILGLENVKIVRSGYSVEYNFIDPRELYHTLETKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN-KLDCICFSRTDSYIGVMIDDLTSK 418
           I GL+ AGQINGTTGYEEAA QG++AGIN+A   N   +     R D+YIGVMIDDL + 
Sbjct: 362 IRGLYCAGQINGTTGYEEAAGQGIIAGINAALSLNSNYEPFILKRNDAYIGVMIDDLVTL 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R     +  +E   L ++L
Sbjct: 422 GTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKISAVSYQRYLTLNRKKEEVTKLTNIL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K  V+    LS   +   QDG+ R+A++ LS P+ ++  L  IC   + + +  I++++I
Sbjct: 482 KETVILPSQLSQHGVCISQDGRKRSAFDLLSNPNINMNILSKICNQIKNYHANTIQQVEI 541

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ YA Y  +Q ++ +    EE   IP D ++S +  LS E++EKL  +KP ++  A +I
Sbjct: 542 EAKYAPYFIKQELDIQSFIAEENTHIPHDIEFSQIHGLSTEIQEKLQYMKPPSIGSARRI 601

Query: 599 EGMTPAALNLLLIYIKKNTVKL 620
            G+TPAA+  +L Y++ +  K 
Sbjct: 602 PGVTPAAITNILFYLRYHKNKK 623


>gi|218134367|ref|ZP_03463171.1| hypothetical protein BACPEC_02261 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989752|gb|EEC55763.1| hypothetical protein BACPEC_02261 [Bacteroides pectinophilus ATCC
           43243]
          Length = 587

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/575 (41%), Positives = 339/575 (58%), Gaps = 5/575 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           M CNP IGG  KGHLVREIDAL G MG+  DA  IQ ++LN  KGPAV   R QAD++ Y
Sbjct: 1   MPCNPNIGGSSKGHLVREIDALGGEMGKNIDATFIQSKMLNASKGPAVHSLRAQADKQDY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
              M+  + + E+L + Q EV+        +  +     ++     V+L TGT+L+    
Sbjct: 61  SRRMRMVMENTEHLHIRQAEVSELIVNDGRVQGVKTYSGAVYHAKAVILCTGTYLKARCI 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
            G +    G  G   +N L  S +       R KTGTPAR+D ++I + K  +Q  D+++
Sbjct: 121 YGDVSNYTGPNGLQAANHLTESLIANGISVRRFKTGTPARVDKRSIDFSKMAEQKGDDKI 180

Query: 224 IPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           +PFSF T  D I   Q+ C +T TN +TH II  N+  S +YSG I   GPRYCPSIEDK
Sbjct: 181 VPFSFTTNPDDIQKEQVSCWLTYTNEKTHEIIRANLDRSPLYSGVIHGTGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +VRF ++  HQ+F+EPEG  T+ +Y  G+S++LPE++Q++  RT+PGLE V I+R  YAI
Sbjct: 241 VVRFADKERHQVFIEPEGNYTNEMYLGGMSSSLPEDVQYEMYRTVPGLENVRIVRNAYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYD I+P +L  +LE K I GLF  GQ NG++GYEEAA+QG++AGIN+A K      +  
Sbjct: 301 EYDCIDPVQLKLSLEFKNIEGLFAGGQFNGSSGYEEAASQGIIAGINAAMKVLGKSPLIL 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R++SYIGV+IDDL +K   EPYRM TSRAEYR+ LR DNAD RLT  G ++G I E+R 
Sbjct: 361 KRSESYIGVLIDDLVTKENTEPYRMMTSRAEYRLLLRQDNADLRLTHYGYEIGLIDEKRM 420

Query: 462 KRFAKYIQEYNFLRSLLKSLVL-TSKNLSSTSISFKQ--DGKTRTAYEFLSYPDFSIQNL 518
                  +  N     L +  + TS+N+                T  + +  P+ S  ++
Sbjct: 421 NYVKYKEKAINEEIERLNNTFVGTSQNVQELLERRNSTLLTNGVTLADLVRRPELSYDDI 480

Query: 519 FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
             I  D  + S  + E++ I   YA Y  RQ  + +  K  E + IP D DY ++  L +
Sbjct: 481 EPIDKDRPELSEDIREQVNINIKYAGYIERQRRQVEHFKKLENKKIPSDIDYKAISGLRS 540

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           E  +KL   +P N+ QA +I G++PA +++LL+Y+
Sbjct: 541 EAVQKLDKFRPLNVGQAQRISGVSPADISVLLVYM 575


>gi|114762197|ref|ZP_01441665.1| glucose-inhibited division protein A [Pelagibaca bermudensis
           HTCC2601]
 gi|114545221|gb|EAU48224.1| glucose-inhibited division protein A [Roseovarius sp. HTCC2601]
          Length = 622

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/580 (53%), Positives = 415/580 (71%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T   + IG MSCNPAIGGLGKGHLVREIDALDG+MGRVAD AGIQ+R+LN 
Sbjct: 26  RMGARTALVTLTEAGIGVMSCNPAIGGLGKGHLVREIDALDGVMGRVADQAGIQYRLLNR 85

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +KGPAV+GPR QADR+LYR AM RE+ +  NL ++QGEV       + +  +++ D S +
Sbjct: 86  RKGPAVQGPRAQADRKLYREAMLREMKATPNLTIVQGEVVDLMMSGDTVEGVILDDGSEL 145

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           RC +VVLTTGTFLRGVIHIG    P GRMGD PS  L      F  + GRLKTGTP RLD
Sbjct: 146 RCGSVVLTTGTFLRGVIHIGDKSRPGGRMGDRPSVRLAERIDHFGLELGRLKTGTPPRLD 205

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI W + E+Q  DE  + FSF++     RQI CGIT TN  TH II +N+  SA+Y G
Sbjct: 206 GRTIDWSQLEEQPGDEEPVLFSFLSQAPAARQISCGITHTNERTHEIIRDNLDRSAMYGG 265

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   +YPNGIST+LPEE+Q  ++R+
Sbjct: 266 HIEGVGPRYCPSIEDKVVRFADKTSHQIFLEPEGLDDHTIYPNGISTSLPEEVQLDYVRS 325

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I++PGYAIEYD+++P+ L   L  + + GLFLAGQINGTTGYEEAAAQGLVA
Sbjct: 326 IFGLEHAEILQPGYAIEYDFVDPRSLDLRLAVRNVGGLFLAGQINGTTGYEEAAAQGLVA 385

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A  +     + F R++SYIGVMIDDLTS+GV EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 386 GVNAAMDALGQGSVHFGRSESYIGVMIDDLTSRGVSEPYRMFTSRAEFRLSLRADNADQR 445

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  ++LGCI E R+  F++ +++ +  R LL+S     K+L +  I    DG+ R  +
Sbjct: 446 LTPRAIELGCISEERRAAFSEKLEKLSSGRELLESRQFAPKDLGTMGIQVSPDGQKRNGF 505

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + L++PD +++ L +  P      + + ++L+ ++ YA Y  RQ  +   ++ +E   IP
Sbjct: 506 QLLAFPDVTMKTLVAGEPAFEGMDAEIAQQLERDALYANYIARQQKDVDALRRDEAMTIP 565

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
           + F+++++  LSNELK KLS+ +P NL QA+K++GMTPAA
Sbjct: 566 RAFEFAAVEGLSNELKHKLSLARPENLAQAAKVDGMTPAA 605


>gi|308182385|ref|YP_003926512.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori PeCan4]
 gi|308064570|gb|ADO06462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori PeCan4]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKIDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|332673056|gb|AEE69873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 83]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTTPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARNSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK+F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKNFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|294505874|ref|YP_003569932.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Salinibacter ruber M8]
 gi|294342202|emb|CBH22980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Salinibacter ruber M8]
          Length = 664

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/636 (43%), Positives = 397/636 (62%), Gaps = 21/636 (3%)

Query: 2   INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +++ Y   DVIV+GGGH+G EAAA AA +GA T LIT K + IG MSCNPAIGG+GKGH+
Sbjct: 1   MHQDYFEHDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            REIDAL G+MGR  D AGIQFR+LN  KGPAV GPR Q  R  Y  A+++E+ + +NL 
Sbjct: 61  AREIDALGGIMGRATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLK 120

Query: 119 VIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +    V    T+     ++ +            V+LTTGTF  GVIH+G+     GR+G+
Sbjct: 121 MRSDMVKEILTDDAGETVTGVRTNLGKEFCAPCVILTTGTFSNGVIHVGEQNFGGGRIGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
           S S+ +        F++GRLKTGTP R+DG++I +   EKQ  D     FSF+TD +   
Sbjct: 181 SASHGITGCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSV 240

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C +T T  ETH ++      S +++G + + GPRYCPSIEDKI RF E++ HQ+F
Sbjct: 241 EAQLSCWLTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLF 300

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +EPEG +T  VY NG S++LPEE+Q + +RT+PG+E+ ++ RPGYAIEYD+  P ++  +
Sbjct: 301 IEPEGRDTHEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYS 360

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK + GLF AGQINGTTGYEEAAAQG++AGIN+ +K  + D I   R+++YIGV+IDD
Sbjct: 361 LETKYVDGLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDD 420

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KG  EPYRMFTSRAE+RI LR DNAD RLT +G KLG   + R  R  +  +  +  
Sbjct: 421 LVAKGTDEPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVT 480

Query: 475 RSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           R  L    ++ + +     S+      + R   E    P+   ++L      A  +  +V
Sbjct: 481 RETLSDTTVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLRH---AGIYDEVV 537

Query: 533 IER---------LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            E          ++I+  Y  Y  RQ    +E++ +E+  IP DFDY +L  +S E ++K
Sbjct: 538 TEAPGMLSAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQK 597

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           LS ++P NL QAS++ G+  + +++L++ +K   V+
Sbjct: 598 LSKVEPDNLGQASRVPGVRASDISVLMVLLKNEGVE 633


>gi|217034040|ref|ZP_03439462.1| hypothetical protein HP9810_891g44 [Helicobacter pylori 98-10]
 gi|216943548|gb|EEC22999.1| hypothetical protein HP9810_891g44 [Helicobacter pylori 98-10]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL+V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLNVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|161833655|ref|YP_001597851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri GWSS]
 gi|293977767|ref|YP_003543197.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           DMIN]
 gi|205831574|sp|A8Z5Q4|MNMG_SULMW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152206144|gb|ABS30454.1| glucose inhibited division protein A [Candidatus Sulcia muelleri
           GWSS]
 gi|292667698|gb|ADE35333.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           DMIN]
          Length = 611

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/618 (42%), Positives = 374/618 (60%), Gaps = 15/618 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGH+G EAA  A+ LG++T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVKQYDVIVVGGGHSGSEAALAASNLGSNTLLITTNLYNIGQMSCNPAMGGIAKGQMIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +  ++NL   
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKKKNLSFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +   +  +       I+  +V+LT GTFL G+IHIG  K   GR+ ++   
Sbjct: 121 QSTVVDLIIKNYKVIGVKTILGIYIKSKSVILTNGTFLNGIIHIGDKKNSGGRISENSVK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     K  F +GR+KTGT  RLDG+++ + K  +Q  D  + PFS++++    +Q +C
Sbjct: 181 GLTEKLKKIGFFSGRMKTGTSPRLDGRSLDFSKMIEQLGDFPIEPFSYLSNLNILKQKKC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TNLETH ++ +    S I++G IK  GPRYCPSIE+K+ RF  +  HQIF+EPEG+
Sbjct: 241 YITHTNLETHNLLSKEFNRSPIFNGKIKCVGPRYCPSIEEKVYRFSNKENHQIFVEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG ST++PEE+Q++ + TIPG E   ++RPGYAIEYDY  P +L   LETK I
Sbjct: 301 NTIEVYINGFSTSMPEEVQYKALLTIPGFEHAKMVRPGYAIEYDYFPPTQLKNNLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AGIN+  K N+ D     R ++YIGV+IDDL  KG 
Sbjct: 361 ENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKDPFILKRNEAYIGVLIDDLIYKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLT +G+ LG +   R       I++        K 
Sbjct: 421 EEPYRMFTSRAEYRILLRQDNADERLTHMGINLGLVSYDR-------IKKLKNKNKNKKQ 473

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVIER 535
             L  K   + ++  K++ K       LS P+ SI ++  +               ++E+
Sbjct: 474 CFLFFKINKANNLILKENIKICD---LLSRPEISIYDIIKLSLIKNFIKKNNIDKKILEQ 530

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + +   Y  Y  ++    K++   E   IP DFDY+ + ++S E +EKL   KP ++ +A
Sbjct: 531 ISLYIKYKGYLLKEEENVKKMYRLETIRIPNDFDYNQVKSISIEAREKLLNYKPNSIGEA 590

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++P+ + +L++++
Sbjct: 591 SRISGVSPSDIRILILFL 608


>gi|308061566|gb|ADO03454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Cuz20]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 373/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL  KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVIKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|304437939|ref|ZP_07397885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369079|gb|EFM22758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 626

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/623 (42%), Positives = 375/623 (60%), Gaps = 9/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP++GG GK HLVREI
Sbjct: 4   NTNYDIIVIGAGHAGVEAALAAARMGRRTLILTLSLDNIAMMPCNPSVGGPGKSHLVREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENLDV Q 
Sbjct: 64  DALGGEMGLAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLDVRQL 123

Query: 123 EVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V    TE+      ++ +V +    +    V+L TGT+LRG I +G+     G  G  P
Sbjct: 124 LVTELITEESTGEKRVTGVVCETGERLTAHAVILATGTYLRGRIILGETIYDGGPNGQRP 183

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           + +  +S         R KTGTPAR+D +T+   +T  Q  D     FSF+TD + + Q 
Sbjct: 184 AMAFSDSLRTAGLRLMRFKTGTPARVDRRTLDLAETALQEGDTDAPAFSFLTDTMPDAQT 243

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN  TH +I  N+  + + +G I+  GPRYCPSIE KI RF ++  HQ+FLEPE
Sbjct: 244 PCYLTYTNEATHAVIRANLHRAPMANGVIEGIGPRYCPSIETKIARFPDKERHQLFLEPE 303

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T+ +Y  G+ST+LP ++Q +F+RTIPG+    ++RPGYAIEYD ++P +L  +L  K
Sbjct: 304 GLHTNEIYVQGMSTSLPTDVQEEFLRTIPGMHHARMMRPGYAIEYDCLDPLQLEASLAVK 363

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +I+GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR     + +   R+D YIGV+IDDL +K
Sbjct: 364 EIAGLYSAGQANGTSGYEEAAAQGLVAGINAARACMGEEPLILRRSDGYIGVLIDDLVTK 423

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DNAD RLTPIG ++G + + R  RF       +    LL
Sbjct: 424 GTEEPYRMMTSRAEYRLVLRQDNADLRLTPIGRRIGLVSDARWTRFTAKRGAIDAALRLL 483

Query: 479 KSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           +   L+                     T +  L+  +   + L ++  D    +  V E 
Sbjct: 484 RERRLSPSAETEALLAGAGISPLRTPMTLFALLAR-EGDYRVLAAVF-DLPPLADDVREE 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I + Y  Y  +Q  +   ++  E R IP  FDY+++ +L  E  EKLS ++P ++ QA
Sbjct: 542 VEITARYDGYIRKQEEQIARMERLEARRIPAAFDYAAVTSLRLEAAEKLSAVRPRSIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           S+I G++PA +++LL+Y+++   
Sbjct: 602 SRISGVSPADISVLLVYLERARR 624


>gi|261837662|gb|ACX97428.1| glucose inhibited division protein A [Helicobacter pylori 51]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L+   I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELNENPINDKIDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|210134414|ref|YP_002300853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori P12]
 gi|226700963|sp|B6JKE5|MNMG_HELP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|210132382|gb|ACJ07373.1| glucose inhibited division protein A [Helicobacter pylori P12]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   I  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIVENGEIVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  Q        L+  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQAIQENLKRLREC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|317008863|gb|ADU79443.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori India7]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA  +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEAGLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ +N
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        S  V+
Sbjct: 481 VLTPSKEVLKRLNELGENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLAPLSERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK+F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKNFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|254778922|ref|YP_003057027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori B38]
 gi|254000833|emb|CAX28761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           (Glucose-inhibited division protein A) [Helicobacter
           pylori B38]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/621 (44%), Positives = 368/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+A            R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAALALKNQAPFILKRNEAYIGVLIDDLITKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL      LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYNLGLMEQDFYKELEKDKQAIQENLKRLKEC 480

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT    +   +S                L+   F+I+ + S        +  V+E+++I
Sbjct: 481 VLTPSKEALKRLSELDENPINDKVDGVSLLARDSFNIEKMRSFFSFLAPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|315586210|gb|ADU40591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 35A]
          Length = 621

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 371/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+G    LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGVRVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDQQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|237756701|ref|ZP_04585204.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691140|gb|EEP60245.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 620

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/630 (46%), Positives = 384/630 (60%), Gaps = 22/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDV+VIGGGHAG E A  +AKLGA TALIT     IG M CNP+IGG+ KG +VR
Sbjct: 2   VYDIEYDVVVIGGGHAGIETALASAKLGAKTALITIDKEKIGLMPCNPSIGGIAKGIVVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M +  D  GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI
Sbjct: 62  EVDALGGEMAKAIDQTGIQFKVLNTRKGPAVRSPRAQADKEEYRRYMVNKTNNTENLTVI 121

Query: 121 QGEVAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + EV     +  KN +  ++      I+   VV+TTGTFL G+IHIG  + PAGRM + P
Sbjct: 122 EDEVIDIVLKENKNEVDGVITDKGLKIKTKAVVVTTGTFLNGLIHIGDKRFPAGRMEEKP 181

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI----- 233
           S  L   + +  F+  R KTGTPARLD  TI +   E+   D     FSF T+       
Sbjct: 182 STKLPEFYKRAGFELFRFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWF 241

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               QI C IT T  ETHRII EN+  +A+Y G I   GPRYCPSIEDKIV+F  ++ H 
Sbjct: 242 KEKDQIPCYITYTTPETHRIIKENLHRTALYGGAITGIGPRYCPSIEDKIVKFEGKDRHT 301

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPE  +   +YPNG+ST+LPEEIQ Q  R+IPGLE V +++P YAIEYD + P EL+
Sbjct: 302 VWLEPETRDGISIYPNGLSTSLPEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELY 361

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVM 411
           PTLETK+I GL+ AG  NGTTGYEEAA QG+VAGIN+A ++    +     R ++YIGVM
Sbjct: 362 PTLETKRIRGLYHAGNFNGTTGYEEAAGQGIVAGINAALRALGKNEPFIIKRDEAYIGVM 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDLT+KGV+EPYR+FTSR+EYR+ LR DNA  RL      +G + E   K   +  +E 
Sbjct: 422 IDDLTTKGVIEPYRLFTSRSEYRLHLRQDNAILRLYQKAYNIGMLNEEEYKFVKETEEEI 481

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               +  K   +            K   K  + + +L  P+  IQ L  I     + S  
Sbjct: 482 RNWINTYKETFI------------KDGDKKVSIFTYLQKPEVDIQKLKEIGIAVPE-SDY 528

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E ++I   Y  Y  R+    +++K+ E   IP+D DYS +  L  E+ +KL+  KP  
Sbjct: 529 IQEEIEINVKYDGYLEREEKLNEKMKYLEGIKIPEDIDYSQVAGLRKEIVQKLTKFKPMT 588

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L QAS++EG+TPAA+  LL++I+K   K  
Sbjct: 589 LGQASRLEGITPAAITALLVHIEKMREKRK 618


>gi|94676767|ref|YP_588617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166222910|sp|Q1LTU7|MNMG_BAUCH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|94219917|gb|ABF14076.1| glucose inhibited division protein A [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 631

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/607 (46%), Positives = 388/607 (63%), Gaps = 5/607 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  +AK+G +T L+TH   TIG MSCNPAIGG+GKGHL +E+DA+
Sbjct: 7   FDVIIIGGGHAGTEAAVASAKIGCNTLLLTHNIKTIGEMSCNPAIGGIGKGHLAKEVDAM 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  DAAGIQFR+LN  KGPAVR  R QADR LYR A+   + +  NL V+Q  V 
Sbjct: 67  GGIMAKAIDAAGIQFRILNASKGPAVRATRAQADRYLYRKAVYNMLKNTNNLLVLQQFVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +  ++ +       ++V+LT GTFL G IHIG    P GR GD  S SL ++
Sbjct: 127 NLIIKNNNVIGVISKAKDKFYANSVILTVGTFLDGKIHIGLNSYPGGRTGDLSSISLSSN 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITR 244
             K  F   RLKTGTP R+   T+ ++   KQ +D  L  FSF      + RQI C IT 
Sbjct: 187 LRKLPFRVKRLKTGTPPRIHASTVNFNILTKQESDNPLPVFSFTGSVSEHPRQIPCYITY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+ +S IY+ +I+  GPRYCPSIEDKI+ F  R+ HQIFLEPEGL +++
Sbjct: 247 TNKNTHDIIYNNLHYSPIYTKNIEGIGPRYCPSIEDKIIHFAHRDSHQIFLEPEGLMSNI 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP +IQ + +++I GLEK +II+PGYAIEYD+ +P++L  TLE+K I+GLF
Sbjct: 307 IYPNGISTSLPVDIQLKIVQSIEGLEKASIIQPGYAIEYDFFDPRDLKNTLESKIINGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AGIN+A+K  + D    +R+ +YIGV+IDDL  +G+ EPY
Sbjct: 367 FAGQINGTTGYEEAAAQGLIAGINAAKKVLEQDSWYPNRSQAYIGVLIDDLCLQGIEEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT I  KLG + E    +F   +      R  L++L + 
Sbjct: 427 RMFTSRAEYRLSLREDNADLRLTEIARKLGLVNENHWHKFCIKLDYIERERQRLRNLWVQ 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIES 540
              +    ++              E L  P+ + + L ++        +    E+++I+ 
Sbjct: 487 PNTIGIQDLNQLLKKPIMCKINGEELLRRPEINYKTLTNLSFFQPTLKNIQAAEQIEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +Q  +       E+ L+PK+ D+S +  LSNE   +L+  +P+++ QA +I G
Sbjct: 547 KYEGYIAQQQEQILRQLNYEQTLLPKNMDFSLVTGLSNEAISQLNNHQPYSIGQALRISG 606

Query: 601 MTPAALN 607
           +TP A++
Sbjct: 607 ITPIAIS 613


>gi|108562639|ref|YP_626955.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPAG1]
 gi|123373846|sp|Q1CUU1|MNMG_HELPH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|107836412|gb|ABF84281.1| glucose inhibited division protein A [Helicobacter pylori HPAG1]
          Length = 621

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGIS-----LLARDSFNAEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|149369360|ref|ZP_01889212.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [unidentified eubacterium SCB49]
 gi|149356787|gb|EDM45342.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [unidentified eubacterium SCB49]
          Length = 623

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/623 (43%), Positives = 386/623 (61%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++ YDVIV+G GHAG EAAA AA +GAST LIT     IG MSCNPA+GG+ KG +VR
Sbjct: 1   MFDKIYDVIVVGAGHAGGEAAASAANMGASTLLITMNLQNIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G ++D   IQF++LN  KGPA+  PR Q+DR  +  A + ++    NLD  
Sbjct: 61  EIDALGGYSGIISDDTAIQFKMLNKSKGPAMWSPRVQSDRMRFSEAWRLKLERTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VAG   E + I+ +       +R  +VVLT GTFL G+IHIG  +   GR G+  S 
Sbjct: 121 QEMVAGIVVEDSKIAGVKTSLGLTVRGKSVVLTNGTFLNGLIHIGDKQFGGGRAGERAST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +   F+TGR+KTGTP R+DG+++ + K   Q  D     FS+ +  K   +Q +
Sbjct: 181 GITKELVDLGFETGRMKTGTPPRVDGRSLDFSKMIVQPGDVNPEKFSYSSSTKPLTKQRD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ + H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHLTYTSPQVHDMLKEGFDRSPMFNGTIESLGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T   Y NG ST+LPE+IQ + +R + G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WDTVEYYINGFSTSLPEDIQFKALREVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ++GLF AGQINGTTGYEEAA+QGL+AGIN+A    + D     R ++YIGV++DDL +KG
Sbjct: 361 VAGLFFAGQINGTTGYEEAASQGLMAGINAALLVQEKDPFILKRNEAYIGVLVDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G +LG   E R +      ++ +   +   
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPKGFELGLASEDRLREMEIKQKKSDAFVNFFT 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
           +  ++ + ++    + K     ++       S P+ ++ ++  I       +A +  + V
Sbjct: 481 TTSVSHEVINPILEAKKSALVSQSDKMIRSFSRPNITMDDMRKIAAVEEYINANELDTEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +++ +I+  YA Y  ++   A ++   E   IP +FDYS L +LS E +EKL+ +KP  +
Sbjct: 541 LQQAEIQVKYAGYIAKEKNNADKLNRLEGIKIPDNFDYSKLKSLSFEAREKLTKIKPVTV 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P  +++LL+Y+ +
Sbjct: 601 SQASRISGVSPNDISVLLVYMGR 623


>gi|317012057|gb|ADU82665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Lithuania75]
          Length = 621

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 367/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLIAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQAIQENLKRLKEC 480

Query: 482 VLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT    +      +              L+   F+I+ + S        +  V+E+++I
Sbjct: 481 VLTPSKEALKRLSELGENPINDKMDGVSLLARDSFNIEKMRSFFSFLAPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|77410825|ref|ZP_00787182.1| glucose inhibited division protein A [Streptococcus agalactiae
           CJB111]
 gi|77163043|gb|EAO73997.1| glucose inhibited division protein A [Streptococcus agalactiae
           CJB111]
          Length = 604

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/602 (41%), Positives = 353/602 (58%), Gaps = 7/602 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L T     +  M CNP+IGG  KG +VREIDAL G MG+  D   IQ ++LN  
Sbjct: 1   MGCKTLLATINLEMLAFMPCNPSIGGSAKGIVVREIDALGGEMGKNIDKTYIQMKMLNTG 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAVR  R QAD+ LY   M++ +  QENL + Q  +     E   +  +    N    
Sbjct: 61  KGPAVRALRAQADKALYAQTMKQTVEKQENLTLRQAMIDEILVEDGKVVGVRTATNQKFS 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             +VV+TTGT LRG I +G+LK  +G      S +L ++      + GR KTGTP R+  
Sbjct: 121 AKSVVITTGTALRGEIILGELKYSSGPNNSLASVTLADNLRDLGLEIGRFKTGTPPRVKA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
            +I +++TE Q  DE+   FSFM+  +     Q+ C +T TN  +H II +N+  + ++S
Sbjct: 181 SSINYEETEIQPGDEQPNHFSFMSRDEDYITDQVPCWLTYTNTLSHDIINQNLHRAPMFS 240

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG +T+ VY  G+ST+LPE++Q   +R
Sbjct: 241 GIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEGRHTEEVYVQGLSTSLPEDVQVDLLR 300

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE   ++R GYAIEYD + P +L  TLETK I+GLF AGQ NGT+GYEEAA QGLV
Sbjct: 301 SIKGLENAEMMRTGYAIEYDIVLPHQLRATLETKVIAGLFTAGQTNGTSGYEEAAGQGLV 360

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+A K      +   R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD 
Sbjct: 361 AGINAALKVQGKPELILKRSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNADM 420

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS---KNLSSTSISFKQDGKT 501
           RLT IG ++G + E R   F K   ++      L S+ L      N     + FK     
Sbjct: 421 RLTEIGYEIGLVDEERYAIFKKRQMQFENELERLDSIKLKPVSETNKRIQELGFKPLTDA 480

Query: 502 RTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            TA EF+  P  +                S VIE L+ E  Y  Y  + + +  ++K  E
Sbjct: 481 LTAKEFMRRPQITYAVATDFVGCTDEPLDSKVIELLETEIKYEGYIKKALDQVAKMKRME 540

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK-KNTVK 619
           ++ IP   D+  + +++ E ++K   + P  L QAS+I G+ PA +++L++Y++ +   +
Sbjct: 541 EKRIPPHIDWDDIDSIATEARQKFKKINPETLGQASRISGVNPADISILMVYLEGRQKGR 600

Query: 620 LN 621
            N
Sbjct: 601 KN 602


>gi|317010491|gb|ADU84238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SouthAfrica7]
          Length = 621

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/621 (43%), Positives = 368/621 (59%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNRDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQEIQENLKRLKEC 480

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT           +              L+   F+++ + S        +  V+E+++I
Sbjct: 481 VLTPSKEVLKRLNELGENPINDKMDGVSLLARDSFNLEKMRSFFSFLAPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|91070437|gb|ABE11348.1| glucose inhibited division protein A [uncultured Prochlorococcus
           marinus clone HOT0M-10E12]
          Length = 655

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/637 (43%), Positives = 379/637 (59%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK-------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +  K               I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLISKKIFKKRIKGVRTFFGSYYSAKSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTQNLHEIGIKTERLKTGTPARVDKRSIIFDELDIQPSTAADKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLGECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGINATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLINEKRWSVYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I  +   K   + T  E L  P+F   +L     + 
Sbjct: 488 KLLEEEKFRLNNTRLKNTDEISKKIELETGSKIKGSTTLKELLKRPNFHYSDLIKYNLNE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           R   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 RNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPEEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +K  +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIKKEK 644


>gi|84684648|ref|ZP_01012549.1| glucose-inhibited division protein A [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667627|gb|EAQ14096.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2654]
          Length = 625

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/597 (52%), Positives = 413/597 (69%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++GA TAL+T + S +G MSCNPAIGGLGKGHLVREIDALDG+MGR AD AGIQFR+LN 
Sbjct: 29  RIGARTALVTLRASDLGVMSCNPAIGGLGKGHLVREIDALDGIMGRAADVAGIQFRLLNR 88

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV+GPR QADR+LYR A+   +  QE+L V++GEVA      + +S +++ D S I
Sbjct: 89  SKGPAVQGPRAQADRKLYRAAVSELVSEQEHLTVVEGEVASLAMSGDKVSGLILSDGSEI 148

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
               VVLTTGTFLRGVIHIG ++   GRMGD PS  L           GRLKTGTP RLD
Sbjct: 149 SARAVVLTTGTFLRGVIHIGDVRWEGGRMGDRPSVRLAEQIESLGLPFGRLKTGTPPRLD 208

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI W K E Q  DE    FSF+  K T RQI CGIT TN  TH II  N++ SA+Y G
Sbjct: 209 GRTIDWGKLETQPGDENPEVFSFLNTKPTARQISCGITHTNERTHEIISRNLERSAMYGG 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I   GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   VYPNGIST+LPE++Q  ++ +
Sbjct: 269 HIDGVGPRYCPSIEDKVVRFSDKPSHQIFLEPEGLDDHTVYPNGISTSLPEDVQQAYVAS 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I++PGYAIEYDY++P+ L  TLE K +SGL+LAGQINGTTGYEEAAAQG+VA
Sbjct: 329 ISGLENARILQPGYAIEYDYVDPRALRLTLELKNVSGLYLAGQINGTTGYEEAAAQGIVA 388

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G N+AR +   + + FSR+ SYIGVMIDDL ++GV EPYRMFTSRAE+R++LR DNAD R
Sbjct: 389 GFNAARAALDQEEVIFSRSSSYIGVMIDDLVTRGVTEPYRMFTSRAEFRLALRADNADQR 448

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP+ + LG +   R++RF++ I++ +  +SLLK      + +++   S  +DG  RT +
Sbjct: 449 LTPLAIDLGAVSAERKRRFSEKIEKLDAAKSLLKGRSFKPQEVNAAGGSVSEDGTRRTGF 508

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
           + LS P  +  +L  +             ++  ++ YA Y  RQ  E + ++ +E ++IP
Sbjct: 509 DLLSIPGITFASLVKMNDVFATVDLDTRSQVSKDALYARYIERQAREVEALRRDEHQVIP 568

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            DFDY+ L  L+ ELK+KLS ++P  L  A +IEGMTPAAL L+L  ++++  + + 
Sbjct: 569 SDFDYAGLDGLTGELKQKLSKVQPETLAHAGRIEGMTPAALALILAKVRQSARRKSA 625


>gi|116071928|ref|ZP_01469196.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
 gi|116065551|gb|EAU71309.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
          Length = 641

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 373/625 (59%), Gaps = 8/625 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA   A+LG +TAL +     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITTARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ R LN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRTLNASRGPAVWALRAQTDKRLYSRQMLQLLQHTPNLALREA 127

Query: 123 EVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V G           I  +     S+     VVLT GTFL G I +G   + AGR G+  
Sbjct: 128 MVTGLEVGGEGEEQRIQGVRTYFGSVYAAQAVVLTAGTFLGGRIWVGHQSMAAGRAGEQA 187

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQ 237
           +  L  +       T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++  Q
Sbjct: 188 AEGLTETLQSLGLHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVSGEQ 247

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C ITRT  ETH++I +N+  +AIY G I S GPRYCPSIEDKIVRF ++  HQIFLEP
Sbjct: 248 MSCHITRTTAETHQLIRDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKESHQIFLEP 307

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++RP Y+++YDY+   +L P+LET
Sbjct: 308 EGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQAVMLRPAYSVDYDYLPATQLKPSLET 367

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR   + D + F R  SYIG MIDDL S
Sbjct: 368 KRVRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGEQDPVHFPREGSYIGTMIDDLVS 427

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           + + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     +  
Sbjct: 428 QDLREPYRVLTSRSEYRLILRGDNADRRLTPLGRELGLIDDRRWQLFEDKLQAMEGEKQR 487

Query: 478 LKSLVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L+++ L        +    +      + T  + L  P     +L             V E
Sbjct: 488 LETVRLKVSDPVAPAVEQETGAAIKGSITLADLLRRPAMHAADLVRHGLADGALPLPVRE 547

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I+  Y+ Y  RQ  +  ++K + +R +P D +Y+S+  LSNE +EKLS ++P  L Q
Sbjct: 548 GAEIDIKYSGYLQRQQQQIDQVKRQSQRKLPSDLNYASIGTLSNEAREKLSAIQPTTLGQ 607

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVK 619
           A++I G++ A +  LL++++    +
Sbjct: 608 ANRIPGVSQADITALLMWLELQKRQ 632


>gi|41058559|gb|AAR99261.1| glucose-inhibited division protein A [Candidatus Blochmannia
           festinatus]
          Length = 621

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/610 (44%), Positives = 374/610 (61%), Gaps = 8/610 (1%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGGHAG EAA  A+ L  +T LITH   T+G MSCNP+IGG+GKGHLV+E+DA+ G+M 
Sbjct: 1   IGGGHAGTEAALAASTLQCNTLLITHNIDTLGQMSCNPSIGGIGKGHLVKEVDAMGGVMA 60

Query: 71  RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE 130
              D  GIQFR+LN  KG AV+  R QAD+ LYR  +++ + +Q  L ++Q  V      
Sbjct: 61  SAIDQPGIQFRILNSSKGAAVKSTRAQADKILYRQIIRKYLENQNYLYILQASVEDVIVS 120

Query: 131 KNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL-FNSFMK 188
           +N I  +V+ +  + I   +VVLTTGTFL G I+IG      GR GD  S+SL      +
Sbjct: 121 QNRIIGVVIPKIEAKIYAKSVVLTTGTFLNGKIYIGMKNFHGGRAGDLESSSLLSKKLQE 180

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNL 247
                 RLKTGT  R+  K + +     Q++D+ +  FSF+ + K   +QI C IT TN 
Sbjct: 181 LSLRMSRLKTGTSPRIHSKGVNFKCMFAQYSDDPVPVFSFLGSSKQHPKQIPCYITHTNS 240

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  N+ +S +Y+G I    PRYCPSIEDKI RF ++  HQIFLEPEGL T  +Y 
Sbjct: 241 KTHDIIRSNLNYSPVYAGLISGIPPRYCPSIEDKITRFSDKKTHQIFLEPEGLTTSEIYL 300

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGI+T+LP  IQ Q +++I GLE  +I+RPGYAIEYD+ NP +L  TLE+K ISGLFL+G
Sbjct: 301 NGIATSLPFHIQVQIVQSIKGLENAHILRPGYAIEYDFFNPVDLKLTLESKLISGLFLSG 360

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL++GIN+AR +         R  +Y+GV++DDL + G  EPYRMF
Sbjct: 361 QINGTTGYEEAAAQGLLSGINAARYAQNKSEWYPRRDQAYLGVLVDDLCTHGAKEPYRMF 420

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+SLR DNAD RLT I  KLG I + R K F    +        L++  +    
Sbjct: 421 TSRAEYRLSLREDNADLRLTNITRKLGLINDNRWKTFCVKQENIEREFQKLRNTYIFPNT 480

Query: 488 LSSTSIS----FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESSY 542
             +  ++            +  + L  P+ +   LF +           V E+++I+  Y
Sbjct: 481 TDAMKLNNILKSSLLTNKLSGEKLLKRPEINYSTLFQLSVFKPAIPDNQVYEQIEIQVKY 540

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  E  +    E  ++P D +Y  +  LS E+ +KL   +P+++ QAS+IEG+T
Sbjct: 541 AGYLHRQQEEINKYLRNENTVLPADINYHDISGLSIEVIDKLDYYRPYSVGQASRIEGIT 600

Query: 603 PAALNLLLIY 612
           PAA++ LLI+
Sbjct: 601 PAAISNLLIW 610


>gi|294783016|ref|ZP_06748340.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479894|gb|EFG27671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
          Length = 633

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/628 (43%), Positives = 376/628 (59%), Gaps = 17/628 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T     IG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDNIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN KKGPAVR  R QAD+  Y   M++ +   +NL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTKKGPAVRSLRAQADKMTYANEMKKTLEHTDNLSVIQGM 121

Query: 124 VAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E+     II  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELVVEEEDGKKIIKGIKIREGLEYRAKIVIMATGTFLRGLIHIGEINFKAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMT---DKITN 235
             L  S  K     GR KTGTPAR+DG+TI +   E+Q  D  +++ FS  T   + ++ 
Sbjct: 182 EELPLSLEKIGLKLGRFKTGTPARIDGRTIDFSVLEEQPGDTSQVLKFSNRTTDEEALSR 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           RQI C I  TN + H II    + S +++G I+  GPRYCPSIEDK+ R+ ++  H +FL
Sbjct: 242 RQIPCYIAHTNEKVHEIIKNARERSPMFNGRIQGLGPRYCPSIEDKVFRYPDKIQHHLFL 301

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           E EG  T+ +Y  G+S++LP ++Q + IR + G E   ++R  YAIEYDY+ P+E+  TL
Sbjct: 302 EREGYETNEIYLGGMSSSLPVDVQEEMIRNVKGFENAKVMRYAYAIEYDYVPPEEIKYTL 361

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           E++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R DSYIG +IDDL
Sbjct: 362 ESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVRKLRNEEPIILDRADSYIGTLIDDL 421

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            SKG  EPYRMFT+R+EYR+ LR DNAD RL+ +G +LG I E   +R  K  ++   + 
Sbjct: 422 VSKGTNEPYRMFTARSEYRLYLREDNADLRLSKLGYELGLIPEEEYQRVEKKRRDVELIT 481

Query: 476 SLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DAR 526
            +L    +   NL       K          T  E L  P+ + +++  I       D +
Sbjct: 482 EILTKTNVGPSNLRVNETLLKRGENPIKDGSTLLELLRRPEVTFEDIVYISEEIKGVDLK 541

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL  
Sbjct: 542 GYDHDTSYQVEITVKYQGYINRALKMIEKHKSMENKKIPADIDYDDLKTIPKEAKDKLKR 601

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 602 IKPINIGQASRISGVSPADIQAILIYLK 629


>gi|222824097|ref|YP_002575671.1| glucose inhibited division protein A [Campylobacter lari RM2100]
 gi|222539319|gb|ACM64420.1| glucose inhibited division protein A [Campylobacter lari RM2100]
          Length = 617

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/612 (44%), Positives = 365/612 (59%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+EIDA+
Sbjct: 2   FDVIVIGGGHAGIEASAAAARMGKKTLLLTTLVEQIGAASCNPAIGGLAKGHLVKEIDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG++ D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGQITDEAGIQFRILNESKGVAVRGSRAQIDMDAYRICARNKLLKLQNLEISQEQVL 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      ++LTTGTFL G+IHIG+ K+ AGR+G+  S SL   
Sbjct: 122 SLIIENDEVKGVKTNLENTYFAKKIILTTGTFLNGLIHIGEKKLQAGRVGELASVSLGEY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +     GRLKTGT  R+D K+I +   E Q  DE   PFSF T   T  Q+ C I RT
Sbjct: 182 LKQSGLKIGRLKTGTCPRVDAKSIDFSVLEIQNGDENPKPFSFKTKNFTPNQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL+TH II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+  +    
Sbjct: 242 NLKTHEIIKDNFYRAPLFTGQIEGIGPRYCPSIEDKINRFSDKESHHLFIEPQTKDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q   +R+I G E   I R GYAIEYDYI+P EL  TLETKKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIAMLRSIKGFENAKITRFGYAIEYDYIDPTELRHTLETKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN+       D     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINAVLSIENKDPFILGRDEAYIGVLIDDLVLKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR +NA  RL   G     + +          Q  +     L     T 
Sbjct: 422 MFTSRAEYRLLLREENAILRLGEYGYNFKLLSDDDFAYINNIKQNVSKGLDFLLQTTWTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    SI  ++        + ++   F+++ L ++           +  +  E+ Y
Sbjct: 482 NNKNNEFLQSIKEEKITSIINLQKIVARASFNVEKLKALDKIFENMDEYSLNEILSEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K      IP++FD+ S+  LSNE+ EKL    P  +  AS+I G+T
Sbjct: 542 YHYIAMQKAQIEKMKNLSDLKIPENFDFKSVSGLSNEVVEKLQKFNPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIK 614
           PAAL++L IYIK
Sbjct: 602 PAALDILHIYIK 613


>gi|307108896|gb|EFN57135.1| hypothetical protein CHLNCDRAFT_30521 [Chlorella variabilis]
          Length = 791

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/615 (39%), Positives = 353/615 (57%), Gaps = 16/615 (2%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA  +A+LG  T L+T     I    CNPA+GG  K  LV E+DAL G +G++AD
Sbjct: 125 HAGCEAALASARLGCKTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKMAD 184

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNI 133
              +Q RVLN  KGPAV   R Q D+  Y   M+R +    NL + +G V G   +  + 
Sbjct: 185 RCYLQKRVLNHSKGPAVWALRAQTDKIEYAAGMRRVLEHSPNLFIREGMVTGVEVDGNDQ 244

Query: 134 ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
           +  +         C   VLTTGTF+ G I +G+  + AGR G++ S  L    M+  F+T
Sbjct: 245 VCGVSTFFGITFPCKAAVLTTGTFMNGQIWVGRQSMSAGRAGEAASTGLTERLMELGFET 304

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRI 252
            RLKTGTPAR+D +T+ +   E+Q  DE +  FSF         Q+ C +T T  ETHRI
Sbjct: 305 DRLKTGTPARVDKRTVNFAGLEEQPGDEEVRWFSFDPAVHRPRPQLPCHLTHTTAETHRI 364

Query: 253 IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIST 312
           + +N+  + +Y G + + GPRYCPSIEDKIVRF ++  HQ+FLEPE  +T  +Y  G ST
Sbjct: 365 LRDNLHETPVYGGWLDAKGPRYCPSIEDKIVRFADKESHQVFLEPESRSTPELYVQGFST 424

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT 372
            LPE +Q   + ++PGLE+  ++RP YA+EYDY+   +   +LETK++ GLF +GQ+NGT
Sbjct: 425 GLPERLQLALLHSLPGLERCKMLRPAYAVEYDYLPAHQCHASLETKRVGGLFFSGQLNGT 484

Query: 373 TGYE------EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           TG        EAAAQGLVAG+N+AR++ +L  +   R  SYIG ++DDL +K + EPYRM
Sbjct: 485 TGKHAFRSGAEAAAQGLVAGLNAARRAQELPPVVLPRESSYIGTLLDDLVTKDLREPYRM 544

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT-- 484
            TSR+EYR+ LR DNAD RLTP+G +LG + +RR   F       +  R  L++  +   
Sbjct: 545 LTSRSEYRLVLRSDNADRRLTPLGRQLGLVDDRRWGLFQAKQARIDGERRRLEAARVPAG 604

Query: 485 -SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-----ARKFSSLVIERLQI 538
                ++ + S +      T  + L  P      L +             ++   E +++
Sbjct: 605 HPLTAAAEAASSQTVPPLVTLADLLRRPHVHYPLLEAHGMGAPPLAPAALTAAEKESVEV 664

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  +  RQ  +   +  +  + IP   DY ++  LS E +EKLS ++P ++ QAS+I
Sbjct: 665 DIKYEGFIRRQAKQLASVAAKHAKRIPDTLDYHAIHTLSMEAREKLSKIRPRDIGQASRI 724

Query: 599 EGMTPAALNLLLIYI 613
            G+ P+ ++ LL+++
Sbjct: 725 GGVNPSDISNLLVHL 739


>gi|299143472|ref|ZP_07036552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517957|gb|EFI41696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 631

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/616 (42%), Positives = 382/616 (62%), Gaps = 5/616 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG GHAGCEAA  AA++G  TAL+     +I +MSCNP +GG GKGHLVREIDA
Sbjct: 11  EFDVVVIGAGHAGCEAALAAARIGQKTALLCINLDSIAAMSCNPNVGGTGKGHLVREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAV   R QAD+  Y  +M+R I +QENL + + E 
Sbjct: 71  LGGEMARNIDRTFIQSRMLNTSKGPAVHSLRAQADKRAYHDSMKRVIENQENLYLREAEA 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   + +++ +  ++    TVV+ TGT+L+G +++G++   +G  G  P+N L +
Sbjct: 131 TEIVIENKSVKAVITKTGAIYNTKTVVIATGTYLKGRVYMGEVNYASGPQGFQPANELSS 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGI 242
           S  K   +  RLKTGTPAR+   +I +   E Q+ DE+++PFSF      +  +Q  C +
Sbjct: 191 SLEKEGLNLMRLKTGTPARVLRSSIDFSNMEVQYGDEKVVPFSFDNIDKDMNTQQEVCYL 250

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  E H +I +NI  SA+Y GDI+  GPRYCPSIEDK++RF ++N HQ+F+EPEGL T
Sbjct: 251 TYTTEECHELIKKNINRSALYLGDIEGVGPRYCPSIEDKVMRFSDKNAHQVFIEPEGLTT 310

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+S++LPEEIQ +    I GLE   I+R  YAIEYD I+   L  +LE  +I G
Sbjct: 311 DEMYVQGVSSSLPEEIQLELYHKIKGLENCRIMRSAYAIEYDAIDATILKRSLEHMEIDG 370

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +F AGQING++GYEEAA QGL+AGIN+A K    + +  +R+++YIGV+IDDL +KG  E
Sbjct: 371 MFFAGQINGSSGYEEAAGQGLIAGINAALKVQGKEPLILNRSEAYIGVLIDDLVTKGTRE 430

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM T+RAEYR++LR DNAD RLT  G  +G + + +  R+    +        L+ + 
Sbjct: 431 PYRMMTARAEYRLTLRQDNADLRLTQKGYDIGLVKQEKYDRYVYRKENIEKELERLREIK 490

Query: 483 LTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +     ++     +       T +  E +  P+ + + +     +  +    +IE ++IE
Sbjct: 491 VNPTEENNRILEELGSVPLKNTVSLAELIRRPELNYKLVNIFDKERVQIRDDIIEEVEIE 550

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +Q I+  + K  E R +  + DYS +  L  E +EKLS++KP ++ QAS+I 
Sbjct: 551 IKYEGYIKKQQIQINQFKKLESRKLDINLDYSKIDGLRLEAREKLSLVKPESIGQASRIT 610

Query: 600 GMTPAALNLLLIYIKK 615
           G++PA +N+LLIY+++
Sbjct: 611 GVSPADINVLLIYLEQ 626


>gi|188997499|ref|YP_001931750.1| glucose inhibited division protein A [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|259495853|sp|B2V6C3|MNMG_SULSY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|188932566|gb|ACD67196.1| glucose inhibited division protein A [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 620

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/630 (45%), Positives = 384/630 (60%), Gaps = 22/630 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDV+VIGGGHAG EAA  +AKLG  TALIT     IG M CNP+IGG+ KG +VR
Sbjct: 2   VYDIEYDVVVIGGGHAGIEAALASAKLGTKTALITIDKEKIGLMPCNPSIGGIAKGIVVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M +  D  GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI
Sbjct: 62  EVDALGGEMAKAIDQTGIQFKVLNTRKGPAVRSPRAQADKEEYRKYMVNKTNNTENLTVI 121

Query: 121 QGEVAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + EV     +  KN +  ++      I+   VV+TTGTFL G+IHIG  + PAGRM + P
Sbjct: 122 EDEVIDIVLKENKNEVDGVITDKGLKIKTKAVVVTTGTFLNGLIHIGDKRFPAGRMEEKP 181

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI----- 233
           S  L   + +  F+  R KTGTPARLD  TI +   E+   D     FSF T+       
Sbjct: 182 STKLPEFYKRAGFELFRFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWF 241

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               QI C IT T  ETHRII EN+  +A+Y G I   GPRYCPS+EDKIV+F  ++ H 
Sbjct: 242 KEKDQIPCYITYTTPETHRIIKENLHRTALYGGAITGIGPRYCPSVEDKIVKFEGKDRHT 301

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPE  +   +YPNG+ST+L EEIQ Q  R+IPGLE V +++P YAIEYD + P EL+
Sbjct: 302 VWLEPETRDGISIYPNGLSTSLSEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELY 361

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVM 411
           PTLETK+I GL+ AG  NGTTGYEEAA QG+VAGIN+A ++    +     R ++YIGVM
Sbjct: 362 PTLETKRIRGLYHAGNFNGTTGYEEAAGQGIVAGINAALRALGKDEPFIIRRDEAYIGVM 421

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDLT+KGV+EPYR+FTSR+EYR+ LR DNA  RL      +G + E   K   +  +E 
Sbjct: 422 IDDLTTKGVIEPYRLFTSRSEYRLHLRQDNAILRLYQKAYNIGMLNEEEYKFVKETEEEI 481

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
               ++ K   +            K   K  + + +L  P+  IQ L  +     + S  
Sbjct: 482 KNWINIYKETFI------------KDGDKKVSIFTYLQKPEVDIQKLKEMGIAVPE-SDY 528

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E ++I   Y  Y  R+    +++K+ E   IP+D DYS +  L  E+ +KL+  KP  
Sbjct: 529 IQEEIEINVKYDGYLEREEKLNEKMKYLEGIKIPEDIDYSQVAGLRKEIVQKLTKFKPMT 588

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L QAS++EG+TPAA+  LL++I+K   K  
Sbjct: 589 LGQASRLEGITPAAITALLVHIEKMREKRK 618


>gi|126734409|ref|ZP_01750156.1| glucose-inhibited division protein A [Roseobacter sp. CCS2]
 gi|126717275|gb|EBA14139.1| glucose-inhibited division protein A [Roseobacter sp. CCS2]
          Length = 625

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/615 (53%), Positives = 433/615 (70%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIVIGGGHAG EAA  AA++G  TAL+T    +IG MSCNPAIGGLGKGHLVREI
Sbjct: 6   HYDYDVIVIGGGHAGAEAAHAAARMGVRTALVTLTKHSIGVMSCNPAIGGLGKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGRVAD AGIQFR+LN KKGPAV+GPR Q+DR++YR  MQ E+ + +NL +++G
Sbjct: 66  DALDGVMGRVADKAGIQFRLLNRKKGPAVQGPRAQSDRQIYRTEMQSELNALKNLVIVEG 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E          ++ + M D S +   +V+LT GTFLRGVIHIG +  P GRMGD PS  +
Sbjct: 126 EAVDLLMSGERVTGVQMHDGSALTAQSVILTMGTFLRGVIHIGDVSRPGGRMGDDPSVKM 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 F    GRLKTGTP RLDG+TI WDK E Q +D+  + FSF++      QI+CGI
Sbjct: 186 AERLDSFSLPLGRLKTGTPPRLDGRTIAWDKLEAQPSDKDPVLFSFLSTGTYAPQIDCGI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II +N+  SA+Y G I   GPRYCPSIEDKIVRF E+N HQIFLEPEG+  
Sbjct: 246 THTNAQTHDIIRDNLGRSAMYGGQIDGVGPRYCPSIEDKIVRFAEKNSHQIFLEPEGVTD 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VYPNGIST+LPE++Q  ++ +I GLE   I++PGYAIEYDY++P+ L  TLE + + G
Sbjct: 306 HTVYPNGISTSLPEDVQKAYVNSIYGLENALILQPGYAIEYDYVDPRALQATLELRDVPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQGLVAG+N+A +    D I FSR +SYIGVMIDDL ++GV E
Sbjct: 366 LFLAGQINGTTGYEEAAAQGLVAGLNAAAQVRGRDPITFSRRESYIGVMIDDLITRGVSE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R+SLR DNAD RLT  G  LGC+GE R   F++ +Q  N  +  L ++ 
Sbjct: 426 PYRMFTSRAEFRLSLRADNADQRLTQRGRNLGCVGEGRWAYFSEKMQGINLAKEKLANIS 485

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+++ ++ST +    DG  ++A E L+  DFS ++L  +  +A +  + + ++++ ++ Y
Sbjct: 486 LSAREIASTGVKLNADGPRKSALEALALSDFSFRHLSKLDQNADEIPAHIQDQVKKDALY 545

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  RQ  +   ++ +EK +IP DFDY+ +  LSNE+  KL+  +P ++  A +IEGMT
Sbjct: 546 AHYIARQERDIAALERDEKHVIPADFDYAGVRGLSNEIAAKLAATRPVSIAHAGRIEGMT 605

Query: 603 PAALNLLLIYIKKNT 617
           PAAL L++   KK  
Sbjct: 606 PAALMLIIAATKKQQ 620


>gi|123969416|ref|YP_001010274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. AS9601]
 gi|166222719|sp|A2BTQ6|MNMG_PROMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123199526|gb|ABM71167.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           AS9601]
          Length = 655

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/637 (43%), Positives = 377/637 (59%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK-------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +  K               I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEQIGLNSKKILKKRIKGVKTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKRSIIFDELDVQPSTAVDKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F  +
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFANK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLGECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I FSR  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFSRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLINEKRWSAYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
                 +  L +  L + +  S  I  +   K   + T  E L  P+F   +L     + 
Sbjct: 488 NLLEEEKFRLNNTRLKNTDEISKKIELETGSKIKGSTTLKELLKRPNFHYSDLIKYNLNE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           R   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 RNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +K  +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIKKEK 644


>gi|317180018|dbj|BAJ57804.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F32]
          Length = 621

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YI V+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIAVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        S  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLSERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|32490750|ref|NP_871004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
 gi|31340132|sp|Q8D3K0|MNMG_WIGBR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|25165956|dbj|BAC24147.1| gidA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 628

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/623 (48%), Positives = 404/623 (64%), Gaps = 4/623 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  D+I++GGGHAG EAAAVAAK+  +T LIT    TIG MSCNP+IGG+GKGHLV+EID
Sbjct: 6   KEIDIIIVGGGHAGTEAAAVAAKMKCNTMLITQNIDTIGQMSCNPSIGGIGKGHLVKEID 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G+MG  AD +GIQFR LN  KGPAVR  R Q DR+LY   +Q+ + +Q+NL ++Q E
Sbjct: 66  AMGGIMGIAADNSGIQFRTLNSSKGPAVRATRAQIDRKLYSSLIQKILSNQKNLYLLQQE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     EKN I  +V     +I+   V++TTGTFL G IHIG  +  +GR G+  S  L 
Sbjct: 126 VIDILVEKNKIKGVVTNAGLIIKSKIVIITTGTFLNGKIHIGNKQYVSGRSGEFSSIKLS 185

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECG 241
                KF F   RLKTGTP R+D K++ + K E Q+ D  +  FSFM    I  +Q+ C 
Sbjct: 186 QILKEKFCFRINRLKTGTPPRIDLKSVNFSKLESQYGDTPIPQFSFMKFVGIRPKQLPCY 245

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH II++NIKHS IY+G IK  GPRYCPSIEDK+VRF ++  HQIFLEPEGLN
Sbjct: 246 ITYTNKNTHNIIIDNIKHSPIYNGSIKGIGPRYCPSIEDKVVRFSKKESHQIFLEPEGLN 305

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              +YPNGIST+LP  +Q + IR+I GLE  NI RPGY+IEYD+++P++L  TLE+K IS
Sbjct: 306 NYEIYPNGISTSLPLNLQIKIIRSIKGLESANITRPGYSIEYDFLDPRDLKLTLESKIIS 365

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL++GIN+A            R+ +Y+GV+IDDL + G  
Sbjct: 366 GLFFAGQINGTTGYEEAAAQGLLSGINAALMLKNGSFWFPKRSQAYLGVLIDDLCTLGTK 425

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSR+E+R+ +R DNAD RLT IG KLG I + R   F             LK+ 
Sbjct: 426 EPYRMFTSRSEHRLIIREDNADLRLTEIGRKLGIIEDDRWNNFYNKKNIIYKEIKNLKNT 485

Query: 482 VLTSKNLSSTSISFKQDGK-TRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
            +         I+   +   + TA E L  P+ +  +L       RK     +I++++I+
Sbjct: 486 KILFNKEEKNKINLNINKSGSITAEEILRRPEITYNDLICYNFIKRKLKDEEIIKQIEIQ 545

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  E  +  + +  ++P + ++  +  LS E+ EKL+I KP ++ QA KI 
Sbjct: 546 IKYAGYIKRQEKEINKKTYYDNIILPNEINFKKISGLSKEVIEKLNIFKPTSIGQAIKIS 605

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           G+TPAA++++LI++KKN +  N+
Sbjct: 606 GITPAAISIILIWLKKNNLMYNK 628


>gi|262341291|ref|YP_003284146.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272628|gb|ACY40536.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 622

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 382/623 (61%), Gaps = 9/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YD+IV+GGGHAG EA+  ++ +G+ T L+T    TIG MSCNPAIGG+ KG +VR
Sbjct: 1   MFLDIYDIIVVGGGHAGAEASLASSNIGSKTLLVTTNLQTIGQMSCNPAIGGIAKGQMVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G ++D + IQFR+LN  KGPA+  PR Q DR+L+    +  +     LD+ 
Sbjct: 61  EIDALGGYSGIISDYSMIQFRMLNQSKGPAMWSPRAQCDRKLFSYYWRFFLEKNTQLDLY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     EKN +  +       I+  +V+LT GTFL G IHIG+ KI  GR+ +    
Sbjct: 121 QDTVTSLIIEKNQVKGVKTFFGLKIKGKSVILTNGTFLNGKIHIGEKKINGGRIAEQEVR 180

Query: 181 SLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQI 238
            +     K F F  GR+KTGT  R+DG+++ +DK + Q+ D     FSF  + K   +Q 
Sbjct: 181 GITEQLTKHFGFKYGRMKTGTSPRVDGRSLNYDKMKSQYGDIHPKKFSFFYETKKLTKQR 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           +C IT TN + H +I +N   S I++G I+   PRYCPSIE+KI RF ++  H IF+EPE
Sbjct: 241 KCYITYTNQKVHDLIRKNFNCSPIFTGSIQGVSPRYCPSIEEKIFRFSDKEEHPIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST+  E+IQ+Q ++ I G EKV I+RPGYAIEYDY  P++L PTLE+K
Sbjct: 301 GWNTVEVYINGFSTSFSEKIQYQSLKQISGFEKVKILRPGYAIEYDYFPPEQLKPTLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I  LF AGQINGTTGYEEAAAQGL+AGIN++ K ++ +     R  +YIGV+IDDL +K
Sbjct: 361 IIENLFFAGQINGTTGYEEAAAQGLIAGINASLKISQKEPFILKRNQAYIGVLIDDLITK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLTP+G  +G I E + +   K          L 
Sbjct: 421 GTEEPYRMFTSRAEYRMLLRQDNADIRLTPMGYNIGLISEEKMRILDKKKSNIEKCMHLF 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSI---CPDARKFSSLV 532
           ++     K ++   +  K+  +          LS  +  I+++ SI     + + F   +
Sbjct: 481 QNRNFEPKVINPI-LDDKKSPRIYHDKKIETILSRSEIDIKDIISIPFLMKEIKNFDQEI 539

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E++ I   Y  Y  R+   AK++   E   IP +FDY ++ +LS E +EKL   +P +L
Sbjct: 540 LEQVSIRIKYKGYIDREKENAKKLLKLENLKIPNNFDYKTIQSLSLEAREKLDYHRPVSL 599

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ L++LLI++ +
Sbjct: 600 AQASRISGVSPSDLSILLIHMGR 622


>gi|256819913|ref|YP_003141192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga ochracea DSM 7271]
 gi|256581496|gb|ACU92631.1| glucose inhibited division protein A [Capnocytophaga ochracea DSM
           7271]
          Length = 623

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 374/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGASTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKDKVVGVRTSLGITIKAKSVVLTNGTFLNGVMHIGMKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF  +      Q +
Sbjct: 181 GITECLVQHGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEHPQKFSFSAETQPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDHHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AG+N+  K  +       R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGVNAVLKIRERAPFVLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+G ++G + E R + +    ++ +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADRRLTPLGYEIGTVSEARYRAWEAKERKVSAFITYIK 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDAR-----KFSSLV 532
            L +T + ++     ++     +     + LS PD ++ +  +I   A      + +   
Sbjct: 481 ELSVTPEEVNPILEKYESSPMKQGDKFQKVLSRPDVTLADFEAIDRIAEYIKNNELTEEE 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
               ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL  ++P  L
Sbjct: 541 KTCAEVEVKYAGYIEKERNNADKLNRLESVRIPDNFDYDKIVSLSFEGREKLKKIRPVTL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++LLIY+ +
Sbjct: 601 SQASRISGVSPADISILLIYMGR 623


>gi|94265686|ref|ZP_01289425.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
 gi|93453772|gb|EAT04144.1| Glucose-inhibited division protein A subfamily [delta
           proteobacterium MLMS-1]
          Length = 627

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/618 (45%), Positives = 373/618 (60%), Gaps = 21/618 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN+ YD+IVIG GHAGCEAA  AA+LG  TA++     TIG++SCNPA+GGL KGHLV+
Sbjct: 1   MINQRYDIIVIGAGHAGCEAALAAARLGCDTAVLVMNADTIGALSCNPAVGGLAKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M R  DA GIQFR LN  KGPAVR  R QADR+ Y   +++ +  Q+NL + 
Sbjct: 61  EIDALGGEMARNIDATGIQFRRLNTSKGPAVRSSRAQADRQRYPARLKQVLEQQKNLTIR 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  ++      +R   V++TTGTFL G+IHIG    PAGRMGD PS 
Sbjct: 121 QSTVDRLLVEDKRVVGVLTSLGEELRAGAVIITTGTFLNGLIHIGLKTFPAGRMGDMPSL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQI 238
           +L     +  F  GR+KTGT  RL G +I +   E QF D+    FSF     + T  Q+
Sbjct: 181 ALPTHLKELGFAMGRMKTGTTPRLAGNSIDYSGLEVQFGDDPPPLFSFANAGGRPTLPQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT T   TH II      S + SG I+  G RYCPSIEDK+ RF +++ HQIFLEPE
Sbjct: 241 PCHITYTGAATHEIIRAGCDRSPLLSGVIEGIGARYCPSIEDKVARFADKDRHQIFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL+T  VYPNGIST+LP ++Q   +RTIPGLE+  ++RPGYAIEYDY++P EL P+LE+K
Sbjct: 301 GLDTTEVYPNGISTSLPMDVQLAMLRTIPGLEQARLVRPGYAIEYDYVDPLELQPSLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +++ LFLAGQINGT+GYEEAAAQGL+AGIN+AR+      +   R+ +YIGV+IDDL +K
Sbjct: 361 RLANLFLAGQINGTSGYEEAAAQGLLAGINAARQLGGQPPLVLDRSQAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYR+FTSRAEYR+ LR DNAD RL PIG ++G + E+R + F +  Q    L   L
Sbjct: 421 GTKEPYRLFTSRAEYRLLLREDNADARLCPIGWQIGLLDEQRYRAFERKQQTMAELHQRL 480

Query: 479 KSLVLTS---KNLSSTSISFKQDGKTRTAYEFLSYPDFSI-----------QNLFSICPD 524
           +   +      N     ++     ++ +  E L  P+  +               +   +
Sbjct: 481 RQTTIRPGPATNRRLAELASSPLRQSCSLAELLKRPELDLAAVLALAQAATDEPAAAGTE 540

Query: 525 ARKFS-----SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
                       +   +Q+E  Y  Y  RQ  + +  +  E   +P D  Y  LP LS+E
Sbjct: 541 PADLELPVTLPELGHEVQLEIKYEGYITRQREQVERFRKLESIRLPTDLVYRGLPGLSSE 600

Query: 580 LKEKLSILKPFNLLQASK 597
           + EKL  ++P  L QA++
Sbjct: 601 VVEKLEKVRPRTLGQAAR 618


>gi|330997306|ref|ZP_08321159.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571101|gb|EGG52808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Paraprevotella xylaniphila YIT 11841]
          Length = 623

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 365/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFDYDVIVIGGGHAGCEAAAASANMGAQTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +V     E   ++ +    +  IR   V+LT GTFL G++HIG  ++P GR+ +  S  
Sbjct: 121 DQVKELLVEHGEVTGVKTYFDVTIRARCVILTAGTFLNGLMHIGHTQLPGGRVAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S      + GR+KTGTP R+DG+++ +++ E Q  +     FSFM      +Q+ C 
Sbjct: 181 LTESIACHGINYGRMKTGTPVRIDGRSVHFEEMEIQEGEHDYHKFSFMGRDRQLKQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +Y+G I+S GPRYCPSIE K+V F ER  HQ+FLEPEG +
Sbjct: 241 TCFTNPEVHEVLRSGLPDSPLYNGQIQSIGPRYCPSIETKLVTFPERGQHQLFLEPEGES 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   Y NG S++LP  IQ + ++ IP    + I RPGYAIEYDY +P +L+ TLE+K + 
Sbjct: 301 TQEYYLNGFSSSLPLHIQIEALKKIPAFRDLAIYRPGYAIEYDYFDPTQLYHTLESKILP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF+AGQ+NGTTGYEEA  QG+VAGIN+A K +  +     R +SYIGV+IDDL +KGV 
Sbjct: 361 GLFMAGQVNGTTGYEEAGGQGIVAGINAALKCSGGEPFIMHRDESYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    ++G     R   +    +    + S  K  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTERSYQIGLATRERYDHWLSKKEAVEHIVSFCKDF 480

Query: 482 VLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            L     N    ++           +E ++ P  +++N+       +            +
Sbjct: 481 SLKPALINPGLEALGTTPLKYGCKLFELINRPQITVKNIAEHITPLKALLDTLTDRRDEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ I A +++  E   I   FDY S+ +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYDGYIARERIIADKMQRLESIKIKGRFDYKSMISLSTEARQKLEKINPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QA +I G++P+ +N+LL+ + +
Sbjct: 601 AQAGRIPGVSPSDINVLLVLLGR 623


>gi|163754569|ref|ZP_02161691.1| glucose-inhibited division protein A [Kordia algicida OT-1]
 gi|161325510|gb|EDP96837.1| glucose-inhibited division protein A [Kordia algicida OT-1]
          Length = 623

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 376/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA AA +G+ T L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNTEYDVIVVGAGHAGSEAAAAAANMGSKTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V D + IQF++LN  KGPA+  PR Q+DR  +    +  +   ENLD  
Sbjct: 61  EIDALGGYSGIVTDNSAIQFKMLNKSKGPAMWSPRAQSDRMRFAEEWRLMLERTENLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E   I  +       IR  TVVLT GTFL G+IHIG      GR G+  + 
Sbjct: 121 QEMVRGLIIENEEIKGVKTSLGLEIRSKTVVLTNGTFLNGLIHIGDKNFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    ++  F++GR+KTGTP R+DG+++ + K   Q  DE    FS++   K    Q  
Sbjct: 181 GITEELVELGFESGRMKTGTPPRVDGRSLDYSKMIIQPGDEVPDKFSYLKVTKPLENQRA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSPEVHNLLREGFDRSPMFNGRIQSIGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF AGQINGTTGYEEAA+QGL+AGIN+A K  + +     R ++YIGV+IDDL +KG
Sbjct: 361 VEGLFFAGQINGTTGYEEAASQGLMAGINAALKVQEKEEFILKRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+G KLG   + R +   K     +      K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPVGHKLGLASDERLRSMEKKKTNSDAFIQFFK 480

Query: 480 SLVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
              +    ++    +    +  +    ++  + P+ S++++  +          +    V
Sbjct: 481 DTSVKPDEINPVLEAKNSSKVKQQDKMFKIFARPNISMEDMRKVASVENFIQEHELGKDV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +++  YA Y  ++   A ++   E+  IP DF Y  L  LS E ++KL+ ++P NL
Sbjct: 541 LEQTEVQVKYAGYINKEKSNADKLNNLERVKIPADFKYEGLTNLSMEARQKLAKIRPVNL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ ++++L+Y+ +
Sbjct: 601 SQASRISGVSPSDISVMLVYLNR 623


>gi|171909507|ref|ZP_02924977.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobium spinosum DSM 4136]
          Length = 626

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/636 (42%), Positives = 377/636 (59%), Gaps = 36/636 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV G GHAG EAA  AA+LG  TA++T    TI  MSCNPAIGGL KGHLVREID
Sbjct: 8   KVYDVIVCGAGHAGVEAAMAAARLGCETAILTQNLDTITQMSCNPAIGGLAKGHLVREID 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG   DA GIQFR+LN  KGP+V+ PR Q D++ Y+  M+  + +Q +LD+ QG 
Sbjct: 68  ALGGVMGSNTDATGIQFRMLNATKGPSVQAPRAQCDKKAYQFRMKWLVENQPHLDLHQGN 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E + ++ +      + R  ++V+++GTF+RG++H+G      GRMGD   ++L 
Sbjct: 128 AAEILVENDQVTGVRTSLGLIYRAKSIVISSGTFMRGLLHVGLQNQAGGRMGDG-LSTLS 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------------- 230
           +S     F+  R KTGTP R++G++I + + E Q  D     FS+++             
Sbjct: 187 DSLRHLGFEVQRFKTGTPCRINGRSIDYSQCELQPGDTPPPRFSYLSGVLPDDSELFTLN 246

Query: 231 ----DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
               +     Q  C IT TN  TH +I  N+  S +Y G I+  GPRYCPSIEDK+VRF 
Sbjct: 247 KWSPELFHVEQSPCWITYTNPRTHEVIRANLDKSPMYCGVIEGIGPRYCPSIEDKVVRFA 306

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E+  HQIFLEPEG +T   Y NG+ST+LP E+Q++FIR+I GLE   IIRPGYA+EYDY 
Sbjct: 307 EKERHQIFLEPEGRHTREYYVNGVSTSLPFEVQYEFIRSIKGLENAEIIRPGYAVEYDYC 366

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P +L  TLETK++SGL+ AGQINGT+GYEEAA QGL AG N+A K          R+++
Sbjct: 367 PPTQLQSTLETKRVSGLYFAGQINGTSGYEEAAGQGLWAGTNAALKVKGEAPFTLKRSEA 426

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y+ VM+DDL +KG  EPYR+FTSRAEYR+ LR DNAD RLTP   + G +   R+   A 
Sbjct: 427 YMAVMVDDLITKGTTEPYRLFTSRAEYRLLLRQDNADLRLTPKAAERGMVDAFRKAHTAS 486

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
            I++   L+  + S    +  L+                +++  P+ +   L S      
Sbjct: 487 KIEQLAELKKFVASTTFENTRLA----------------QWIKRPENAFARLPSDL--RG 528

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +SS +    + +  YA Y  RQ     +    E ++IP   DYS++  L  E   KL  
Sbjct: 529 TWSSELWTVAENDLKYAGYITRQEDMVDKTSRMEDKIIPDWVDYSAMKGLKKEAMLKLQS 588

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++P    QA++I+G+TPA L ++ + +KK  V+  +
Sbjct: 589 IRPTTFGQAARIQGVTPADLAVVSVVLKKGGVEEAK 624


>gi|189345565|ref|YP_001942094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium limicola DSM 245]
 gi|189339712|gb|ACD89115.1| glucose inhibited division protein A [Chlorobium limicola DSM 245]
          Length = 621

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/620 (43%), Positives = 371/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV GGGHAGCEA   +A++G S  LI+   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGGGHAGCEAVLASARMGLSCLLISSDLTALARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG+  DA GIQFR+LN  KGPA+  PR QADR LY   M+R I  + N+D++Q  V 
Sbjct: 62  GGEMGKAIDAEGIQFRMLNRSKGPAMHSPRAQADRLLYSQYMRRVIEKEINIDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G       +S + +   + I    V+L  GTFL G+IHIG      GR + + P   L  
Sbjct: 122 GIKNRSGTVSGVYISTGTFIESRAVILACGTFLNGLIHIGLSHYQGGRTLAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           +   F F  GRLKTGTP R+D +++ + K E+Q  D   +PFSF T  + NR Q+ C +T
Sbjct: 182 NLSSFGFRAGRLKTGTPPRIDKRSVDYSKLEEQMGDSLPVPFSFSTHTLANRSQLSCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  ETH I+      S ++SG +K  GPRYCPSIEDKI RF  +  H IFLEPEG +T+
Sbjct: 242 KTTAETHEILRSGFDRSPLFSGKVKGTGPRYCPSIEDKINRFSNKESHHIFLEPEGFDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +++IPGLEKV +IRPGYAIEYDY  P ++  TLETK+I  L
Sbjct: 302 EMYVNGFSTSLPEDIQLLGLKSIPGLEKVKMIRPGYAIEYDYFFPYQIRSTLETKRIDNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQING++GYEEAAAQGL+AGIN++ K      +   R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGSSGYEEAAAQGLMAGINASLKLLDKPPLILKRSDAYIGVLIDDLITKETDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL+  G   G + E+              ++ L  +   
Sbjct: 422 YRMFTSSAEHRLLLRHDNADLRLSSYGYNAGLLDEKSMSDCHIKFSAIEKVKLLASNFKF 481

Query: 484 TSKNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
              +++         +   + +A   L  P  + + L       R+         LV E+
Sbjct: 482 QPVSINQHLSINGIAEIQTSLSALNLLKRPGITFRMLLDGNEYFRESVSEITTDPLVFEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R ++ ++ I   E   IP  F Y  L  LSNE +EKL   +P  + QA
Sbjct: 542 IEIDIKYEGYLKRDLLMSERIIRLESLQIPHSFQYEMLSGLSNEGREKLIRYRPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           ++I G++P+ +++L+I + +
Sbjct: 602 TRILGVSPSDISVLMIKLGR 621


>gi|320530989|ref|ZP_08032021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas artemidis F0399]
 gi|320136738|gb|EFW28688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas artemidis F0399]
          Length = 626

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/623 (42%), Positives = 376/623 (60%), Gaps = 9/623 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IV+G GHAG EAA  AA+LG  T  +T     I  M CNP++GG GK HLVREIDA
Sbjct: 6   DYDIIVVGAGHAGVEAALAAARLGRRTLCVTLSLDNIAMMPCNPSVGGPGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + +  +LDV Q  V
Sbjct: 66  LGGEMGVAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTPHLDVRQLLV 125

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               +E       ++ I  +    I    V+L TGT+LRG I +G+     G  G  P+ 
Sbjct: 126 TELLSEETEDGRRVTGIRCETGEQITARAVILATGTYLRGRIILGETIYDGGPNGQRPAM 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S         R KTGTPAR+D +T+ + +T+ Q  +E   PFSFMT+K+   Q+ C
Sbjct: 186 QLSDSLRALGLKIMRFKTGTPARVDARTVDFSRTQVQEGEENAPPFSFMTEKMPREQVRC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  + + +G I+  GPRYCPS+E KI RF ++  HQ+FLEPEGL
Sbjct: 246 WLTYTNAATHEVIRVNLHRAPMANGVIEGIGPRYCPSVETKIARFPDKERHQLFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y  G+ST+LP ++Q +F+RTI GLE   I+RPGYAIEYD  +P  L P+L  K +
Sbjct: 306 HTNELYVQGMSTSLPTDVQEEFLRTIAGLEHARIMRPGYAIEYDCFDPLGLEPSLAVKGV 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+  GQ NGT+GYEEAAAQGL+AGIN+AR++   + +   R+D YIGV+IDDL +KG 
Sbjct: 366 AGLYSCGQANGTSGYEEAAAQGLIAGINAAREAAGEEPLILGRSDGYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLTP+G ++G + + R  +F            LL++
Sbjct: 426 EEPYRMMTSRAEYRLILRQDNADLRLTPVGREIGLVSDARWAKFTAKRDAIEAALHLLET 485

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             LT    +   ++                L   + S   L ++  D    +  V E ++
Sbjct: 486 TKLTPDAATEGRLADAGLLPLRTPMNLAALLRR-EGSYDVLSALF-DLPILADDVKEEVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  +Q  +   ++  E+R IP++ DY+++ +L  E +EKL+ ++P ++ QAS+
Sbjct: 544 ITVRYDGYIRKQREQIARMERLERRRIPEEIDYAAITSLRLEAQEKLAAVRPHSIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTVKL 620
           I G++PA +++LL+Y++K   + 
Sbjct: 604 ISGVSPADVSMLLVYLEKARREA 626


>gi|308184015|ref|YP_003928148.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SJM180]
 gi|308059935|gb|ADO01831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori SJM180]
          Length = 621

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + I  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEIVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+A            R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLIAGINAALALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNAEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|256370606|ref|YP_003108431.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri SMDSEM]
 gi|256009398|gb|ACU52758.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Sulcia muelleri SMDSEM]
          Length = 622

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/622 (43%), Positives = 378/622 (60%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIV+GGGH+G EAA  A+ LG+ T LIT     I  MSCNPA+GG+ KG +++
Sbjct: 1   MFDHKYDVIVVGGGHSGSEAALAASNLGSKTLLITTNIYNIAQMSCNPAMGGIAKGQIIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +    NL++ 
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLILKKNYNLNLY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + N +  +       I+  +V+LT GTFL G+IHIGK +   GR+ ++   
Sbjct: 121 QDTVIDLIIKNNKVIGVKTILGITIQSKSVILTNGTFLNGIIHIGKKQKSGGRIYENSVK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE- 239
            L     +F   +GR+KTGT  RLDGK++ + K  +Q  D  + PFSF++ K   R  + 
Sbjct: 181 GLTEKLKQFGLISGRMKTGTSPRLDGKSLDYSKMIEQLGDSPIEPFSFLSKKKRMRIKQK 240

Query: 240 -CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TNLETH+++ +    S I++G IK  GPRYCPSIE+KI RF  ++ HQIF+EPE
Sbjct: 241 KCYLTYTNLETHKLLRDKFNLSPIFNGHIKCVGPRYCPSIEEKIYRFSNKDNHQIFVEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT  VY NG ST++PEE+Q++ + TIPG EK  ++RPGYAIEYDY  P +L   LE+K
Sbjct: 301 GWNTQEVYINGFSTSMPEEVQYKALITIPGFEKAKMVRPGYAIEYDYFYPTQLKINLESK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI  LF AGQINGTTGYEEAAAQGL+AGIN+  K N+ D +   R ++YIGV+IDDL  K
Sbjct: 361 KIENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKDPLILKRNEAYIGVLIDDLIYK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYRI LR DNAD RLTP+G KLG +   R K+     +      S  
Sbjct: 421 GTEEPYRMFTSRAEYRILLRQDNADERLTPMGEKLGLVNYERIKKLELKNKHLKKCFSFF 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLVI 533
           K   +  +  +          +     +FLS P+ SI+ +  +          K +  ++
Sbjct: 481 KRKTIKFELANKFLKKSFLIKENIKLGDFLSRPEISIEEIKKLSLVKNFLKKNKINKKIL 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           + + +   Y  Y  ++    K++   E   IP +F+Y  + +LS E KEKL   KP ++ 
Sbjct: 541 DLISLRIKYKGYFKKEEENVKKMSKLENLKIPINFNYKKIKSLSIEAKEKLINYKPNSIG 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           +A KI G++P+ +++L+++++K
Sbjct: 601 EALKISGVSPSDISILILFLRK 622


>gi|225850343|ref|YP_002730577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Persephonella marina EX-H1]
 gi|259495850|sp|C0QPI1|MNMG_PERMH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|225644818|gb|ACO03004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Persephonella marina EX-H1]
          Length = 623

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/628 (46%), Positives = 391/628 (62%), Gaps = 19/628 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDV+VIGGGHAG EAA  +AKLG  TALIT     +G M CNPAIGG+ KG +VR
Sbjct: 2   VYDLEYDVVVIGGGHAGIEAALASAKLGVKTALITLDKEKVGLMPCNPAIGGIAKGIVVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA  G MG+  DA GIQF+ LN +KGPAVR PR QAD+E YR  M  ++L+ ENL VI
Sbjct: 62  EIDAFGGEMGKAIDATGIQFKTLNTRKGPAVRSPRAQADKEEYRKYMVNKVLNTENLTVI 121

Query: 121 QGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +GE      ++    +  + +     IR  +VV+TTGTFL GVIHIG  +IPAGRM + P
Sbjct: 122 EGEATDIYLKESSYEVEGVEVDRRLKIRAKSVVVTTGTFLDGVIHIGDKRIPAGRMDEKP 181

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD------- 231
           S  L + + K  F   R KTGTPARLD +TI +   E+   DE    FSF TD       
Sbjct: 182 STKLPDFYRKLGFPLQRFKTGTPARLDKRTIDFSGLEEAPGDEPAPKFSFWTDPEHSYWF 241

Query: 232 -KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K    QI C IT T  ETHRII EN+  +A+Y G IK  GPRYCPSIEDKIV+F  +  
Sbjct: 242 RKNQKEQIPCYITYTTPETHRIIRENLHRTALYGGAIKGIGPRYCPSIEDKIVKFENKER 301

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPE  N   +YPNG+ST+LPEE+Q +  R+IPGLE V +++P YAIEYD + P E
Sbjct: 302 HTVWLEPETKNGISIYPNGLSTSLPEEVQWEMYRSIPGLENVVLLKPAYAIEYDIVPPTE 361

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+PTLETK++ GL+ AG  NGTTGYEEAA QGLVAGIN+A ++   +     R ++YIGV
Sbjct: 362 LYPTLETKRVKGLYHAGNFNGTTGYEEAAGQGLVAGINAALRALGKEPFYIRRDEAYIGV 421

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDLT+KGV+EPYR+FTSR+EYR+ LR DN   RL      LG +   + K   +  +E
Sbjct: 422 MIDDLTTKGVIEPYRLFTSRSEYRLHLRQDNPVLRLYRKAYNLGMLSYEQFKAVEEIEKE 481

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
                 + ++            I  K + ++ +AY+ L  PD  +  L     +  + S 
Sbjct: 482 IGRWLDIYRN--------ERRKIVSKGETRSVSAYDLLKRPDIDVNKLKEYGFETPE-SD 532

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V E + I   Y+ Y  R+    +++++ E   IP+D DYS +  L+ E+ +KL+  KP 
Sbjct: 533 YVAEEIDINVKYSGYFERERKMNEKMRYLENIKIPEDIDYSQIAGLTKEVVQKLTAAKPL 592

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTV 618
            L  A+++EG+TPAA+  ++I+++K   
Sbjct: 593 TLGHAARLEGITPAAITAIMIHLQKLKR 620


>gi|13473775|ref|NP_105343.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesorhizobium loti MAFF303099]
 gi|21263678|sp|Q98DZ1|MNMG_RHILO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14024526|dbj|BAB51129.1| glucose inhibited division protein A; GidA [Mesorhizobium loti
           MAFF303099]
          Length = 623

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/623 (55%), Positives = 457/623 (73%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+V+GGGHAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTDHYDVVVVGGGHAGCEAASAAARAGAKTALVTLRFDTIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDV++
Sbjct: 61  IDAMDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV  F   +  I+++++     + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S  
Sbjct: 121 GEVLDFEINEGRITAVLLAGGRRLACGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F  GRLKTGTP RLDGKTI W   E Q ADE  +PFS M+D+IT  QIECG
Sbjct: 181 LSATMDRAGFKLGRLKTGTPPRLDGKTIDWASLESQAADEDPVPFSLMSDRITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTSATHELIRANLGRSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNGIST+LP+++Q + ++TIPGLE+  +++PGYAIEYD+++P+EL  TLETK+I+
Sbjct: 301 DDTVYPNGISTSLPQDVQLEILKTIPGLERATMLQPGYAIEYDHVDPRELHQTLETKRIA 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAA QGL+AG+N+AR++   + I  SRT++YIGVM+DDLTS+G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAGQGLLAGLNAARRAAGGEQIVLSRTEAYIGVMVDDLTSRGIS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP+  KLG    +R +R+   +Q  +  R L +S+
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADERLTPLAAKLGIASVQRMQRYGDVMQRLDAARELARSV 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   +DG  R+ YE L+YPD  +  L  + P      +   ERL+ E+ 
Sbjct: 481 AMTPNEAARQGLEINRDGVRRSGYELLAYPDVDVAWLARVEPKFAAIDAKTAERLETEAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  +  +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EGM
Sbjct: 541 YSVYLDRQKSDVAQIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEGM 600

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           TPAAL +++ +++       ++ 
Sbjct: 601 TPAALAIIVAHVRHYENAQRDVA 623


>gi|78780152|ref|YP_398264.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9312]
 gi|123553639|sp|Q317W7|MNMG_PROM9 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|78713651|gb|ABB50828.1| glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9312]
          Length = 662

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/637 (42%), Positives = 378/637 (59%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D++VIGGGHAGCEAA  +AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIVVIGGGHAGCEAAITSAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  KGPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADKTAIQKRILNASKGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK-------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +  K               I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLNSKKIVKKRIKGVRTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTKNLHEIGIKTERLKTGTPARVDKRSIIFDELDAQPSTAADKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            + K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PNIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK N+ D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNEKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWWAYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
                 +  L +  L + +  S +I      K   + T  E L  P+F   +L       
Sbjct: 488 NLLEEEKLRLNNTRLKNTDEISKNIELDTGSKIKGSTTLKELLKRPNFHYSDLIKYNLTE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +K  +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIKKEK 644


>gi|208434162|ref|YP_002265828.1| glucose inhibited division protein A [Helicobacter pylori G27]
 gi|226700964|sp|B5Z9Y2|MNMG_HELPG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|208432091|gb|ACI26962.1| glucose inhibited division protein A [Helicobacter pylori G27]
          Length = 621

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ VAAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLVAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +LS  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLSTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQAIQENLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+I+ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNIEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|295101870|emb|CBK99415.1| glucose-inhibited division protein A [Faecalibacterium prausnitzii
           L2-6]
          Length = 623

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/613 (43%), Positives = 366/613 (59%), Gaps = 4/613 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG GHAG EAA  AA LGA TA+ T     IG+M CNP+IGG  KG LVRE+DA
Sbjct: 6   DYDVIVIGAGHAGIEAAHAAAMLGAKTAVFTMSLDAIGNMPCNPSIGGTAKGTLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA  +Q R+LN  KGPAV   R Q DR+ Y   M+  +     L + Q E+
Sbjct: 66  LGGVMGLAADATYLQSRMLNKGKGPAVHALRVQTDRKRYHEYMKHALELTPGLAIHQAEI 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +V Q N       VV+ TGT L G I +G     +G  G   +N+L  
Sbjct: 126 ISIEVEDGHVKGVVTQLNGEYGAKCVVIATGTNLGGKIFVGDAWYASGPDGMHAANALTE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFMTDKITNRQIECGI 242
           S         R KTGTPAR+  ++I + K E Q  D    L PFSFMTD   + ++EC I
Sbjct: 186 SLKAAGLPLRRFKTGTPARVHRRSIDFSKLECQPGDPNNELQPFSFMTDAPMHNKVECWI 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN ETHRII++NI+ S +Y G I+  GPRYCPSIEDK+VRF  ++ H IF+EP G NT
Sbjct: 246 AYTNPETHRIILDNIQRSPLYGGMIEGVGPRYCPSIEDKVVRFAGKDRHPIFVEPCGENT 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +Y  G S++LPE++Q+ F R+I G E + I+RP YAIEYD ++P  L  TLE+K + G
Sbjct: 306 EEMYLQGASSSLPEDVQNAFYRSIKGFENIEIMRPAYAIEYDCVDPTSLEATLESKVVRG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQ NGT+GYEEAAAQGL+AG+N+AR +     +   R  SY+G ++DDL +KGV++
Sbjct: 366 LYGAGQFNGTSGYEEAAAQGLLAGLNAARNALGESQLILPRQSSYLGTLVDDLVTKGVMD 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR++LR DNAD RLTPIG + G + + R  ++ +     +  R  L    
Sbjct: 426 PYRMMTSRSEYRLTLRQDNADTRLTPIGREYGLVQDDRWTKYQQTQAVLDAERRRLHDAH 485

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           L + +L +   +       +   A E L  P+     +  +       + ++ ERL+ E 
Sbjct: 486 LRTADLRAAMEAAGLAPAAEGGIAEELLRRPEIDYPLIAGMIGWGEGITPMLAERLETEI 545

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ     E+   EK LIP+DF Y+ L  L+ E +EKL+ ++P NL QA +I G
Sbjct: 546 KYAGYIARQDRMIHEVARHEKTLIPEDFSYTELTGLTLEAREKLARIRPKNLGQAGRIPG 605

Query: 601 MTPAALNLLLIYI 613
           ++P+ +  L I +
Sbjct: 606 VSPSDVAQLSIAL 618


>gi|313899762|ref|ZP_07833265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. HGF2]
 gi|312955377|gb|EFR37042.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium sp. HGF2]
          Length = 624

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/623 (41%), Positives = 375/623 (60%), Gaps = 11/623 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L  +T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLKKTTILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ ++L QE+L++ +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLEYKRYMQDKLLQQEHLEIREMCVEE 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   IS +  +D +++ C  +++TTGTF+   + +G     +G   +  + +L  S 
Sbjct: 123 VLAKDGRISGVRQKDGTVVNCRALIMTTGTFMSSTVLVGHTSTLSGPEDEPTTENLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITR 244
                +T RLKTGTPAR+   +I + KT  Q   +  I FS  T +I    +Q  C +T 
Sbjct: 183 RNLGIETFRLKTGTPARVRTASIDFSKTAVQPGTDEFICFSEDTKEIRPFDQQAVCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II  N+K SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TTAKTHDIINSNLKRSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q   + ++PGLE   I +  YAIEYD I+P +  PTLE K I  L+
Sbjct: 303 TYVQGFSTSMPYDVQEAMLHSLPGLENCTIEKYAYAIEYDAIDPLQCKPTLENKIIENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+ RK +  + +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLMAGINAVRKLDHKEPLILHRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+  G + G I + R  R+ K +Q    + S L S+  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADARLSEYGYETGLISDERYARYQKKMQNIEEMISYLASVRFT 482

Query: 485 SKN-----LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            K+     L    +   ++G   +A E L  P  +I  L       R+F   + + ++IE
Sbjct: 483 PKSTVNGLLERLGLDVLKEGI--SAAELLKRPGITIALLEPYLE--REFDPAIAKLVEIE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  +   +A+ ++  +K  +P+ FDY+ +  LS E ++KL+ ++P  + QAS+I 
Sbjct: 539 IRYEGYIKKAKRDAEHLRAMDKVCLPERFDYNQVVNLSLEARQKLNKVQPLTMGQASRIS 598

Query: 600 GMTPAALNLLLIYIKKNTVKLNE 622
           G+ PA + +L +++++      +
Sbjct: 599 GVNPADIAVLAVFMEQLKRTYEK 621


>gi|254457357|ref|ZP_05070785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
 gi|207086149|gb|EDZ63433.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
          Length = 631

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/626 (42%), Positives = 380/626 (60%), Gaps = 8/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVI+IGGGHAG EAA  +A++G  T +I+     +G+ SCNPAIGGL KGHLVRE+DA
Sbjct: 6   NYDVIIIGGGHAGVEAALASARMGNKTLMISMLAENVGATSCNPAIGGLAKGHLVRELDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D AGIQFR+LN  KGPAVRG R Q D + YR+  +  +L+  NL + Q  V
Sbjct: 66  LGGEMGLITDEAGIQFRILNQTKGPAVRGSRAQIDMDKYRIIARNVVLNTPNLHLAQETV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + +  +     +  +   V++T+GTFL G+IH+G+++   GR G+  S  L +
Sbjct: 126 ESLIIEDSTVKGVKTDLLNEYKAKKVIVTSGTFLNGIIHVGEVQKKGGRYGEERSEGLSD 185

Query: 185 SFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIE 239
           S       +  RLKTGT AR+D  TI +   E+Q  DE   PFSF TD+     + +Q+ 
Sbjct: 186 SLKNDCGLNLSRLKTGTCARIDSSTIDFSVMEEQGGDELPSPFSFRTDREEFRASKKQLP 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN  TH II  N   + +++G I    PRYCPSIEDK+ +F +++ H +F+EP+ 
Sbjct: 246 CFIAYTNELTHEIISSNFYRAPLFTGQIAGKSPRYCPSIEDKVSKFADKDRHHLFIEPQT 305

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++    Y NG+ST+LP E+Q   I+++ GLE   I+R GYAIEYD+++P+EL  +LETKK
Sbjct: 306 MDNTECYINGLSTSLPPEVQRDMIKSVKGLENAKIVRYGYAIEYDFVDPRELKHSLETKK 365

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GL+LAGQINGTTGYEEAAAQGL+AGIN++    + + +   R ++YIGV+IDDL +KG
Sbjct: 366 ILGLYLAGQINGTTGYEEAAAQGLMAGINASLSLQEKEPLVLRRDEAYIGVLIDDLVTKG 425

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR+ LR ++AD RL+  G +LG + +   ++     ++      LL+
Sbjct: 426 TNEPYRMFTSRAEYRLLLREESADTRLSRYGHELGLLSDEMYEKVQIKDKQIKDGALLLE 485

Query: 480 SLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
               T          S+         TA + ++   F +  +  I P+  K+   + E +
Sbjct: 486 ETKFTPNKEFIAFLESMGEVPIKDISTAQQLVARKSFDVHKMIKIVPELDKYDDYIKEEI 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            +E  YA Y  +Q  E + +K   K  IP+ FD+  +  LS E+ EKL +  P  L  A 
Sbjct: 546 LVEGKYARYIDKQSEEIQRMKKYLKIAIPEGFDFKGVSGLSKEIVEKLEMFNPPTLQSAM 605

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNE 622
           +I G+TPAA+ +L IYI+  + K  +
Sbjct: 606 QISGITPAAIEILHIYIRMASKKNKQ 631


>gi|302344817|ref|YP_003813170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica ATCC 25845]
 gi|302149647|gb|ADK95909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica ATCC 25845]
          Length = 623

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/623 (40%), Positives = 363/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA LGA+T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFKYDVLVIGGGHAGCEAATAAANLGANTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    +  +   +NLD+ Q
Sbjct: 61  VDALGGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      E   +  I       I   TV++T GTFL G++HIGK K+  GR  +   ++
Sbjct: 121 DQADELLVENGKVLGIKTIWGIDIYARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHN 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +      R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C 
Sbjct: 181 FTESITRHGIRADRMKTGTPVRIDRRSVHFDEMEPQPGETDYHQFSFYGPHRHLPQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG++
Sbjct: 241 TCNTNEEAHEVLRRGVADSPLFNGQIQSTGPRYCPSIETKLVTFPDKSSHPLFLEPEGVD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P E+Q   I  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPWEVQLDAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKQSLESKVIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QGLVAGIN+A      D    +R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGLVAGINAALLCAGKDPFVMNRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT     +G   + R   + +  +  N +     + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTERAYNIGIAKQDRYDWWMQKKEHINRILDFCNNT 480

Query: 482 VLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +  + ++     +            + ++ P  + +NL ++ P  ++           +
Sbjct: 481 SVKPEVVNGFLEHLGTSPIKGATKIVDLVARPQVNFENLSAVIPSLKEAIEASPNRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A++++  E   I   F YS L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMRRLEDIKIKGHFKYSELHDLSTECRQKLEQIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|317179391|dbj|BAJ57179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F30]
          Length = 621

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENGEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLE KKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLEAKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  ++
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERIL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|308063074|gb|ADO04961.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Sat464]
          Length = 621

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 373/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARAHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|188527017|ref|YP_001909704.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Shi470]
 gi|238691893|sp|B2US42|MNMG_HELPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|188143257|gb|ACD47674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Shi470]
          Length = 621

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 374/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEMVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFRVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKGLKKDQQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+++ + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNLEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|332291817|ref|YP_004430426.1| glucose inhibited division protein A [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169903|gb|AEE19158.1| glucose inhibited division protein A [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 625

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/623 (42%), Positives = 383/623 (61%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   +YDVIV+G GHAGCEAAA AA +G+ST LIT    TI  MSCNPA+GG+ KG +VR
Sbjct: 3   LFQDTYDVIVVGAGHAGCEAAAAAANMGSSTLLITMNLQTIAQMSCNPAMGGIAKGQIVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    + ++   +NLD  
Sbjct: 63  EIDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRMKLEGTKNLDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E + +  +       +R  +VVLT GTFL G+IHIG  +   GR G+  + 
Sbjct: 123 QEMVSGLIVENDKVVGVKTSLGIEVRGRSVVLTNGTFLNGLIHIGDKQFGGGRAGERAAT 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI-E 239
            +      F F++GR+KTGTP R+DG+++ + K   Q  DE    FS+  +         
Sbjct: 183 GITEQLAGFGFESGRMKTGTPPRVDGRSLDFSKMIIQPGDEVPEKFSYSKETSPLTHQRP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C ++ T+LE H I+ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 243 CHMSYTSLEVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFIEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  +Y NG ST+LPE++Q + ++++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 303 WNTCEIYVNGFSTSLPEDVQFKALKSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGL+ AGQINGTTGYEEAA+QGL+AG+N+  K ++ D     R ++YIGV+IDDL +KG
Sbjct: 363 VSGLYFAGQINGTTGYEEAASQGLMAGMNAHLKVHEKDPFMLKRDEAYIGVLIDDLITKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+   +G   E R     K   E N L +  +
Sbjct: 423 TEEPYRMFTSRAEYRTLLRQDNADERLTPMSNAVGLASEERLITMEKKQAESNDLVNFFE 482

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNL-----FSICPDARKFSSLV 532
              +  + ++            ++   ++  S P  ++ ++      +   + +     V
Sbjct: 483 ETSILPEEVNDILEERGSSPMRQSDKMFKVFSRPQITLDDMKGFEKVAAYIEEKDLDRDV 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+ +I+  YA Y  ++   A +++  E   IP+ FDY+ L +LS E +EKLS ++P  +
Sbjct: 543 LEQAEIKVKYAGYIAKEKANADKLQRLENIKIPEGFDYTKLKSLSFEAREKLSKIRPTTI 602

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS++ G++P+ ++++L+Y+ +
Sbjct: 603 SQASRVSGVSPSDISVMLVYMGR 625


>gi|315225301|ref|ZP_07867118.1| glucose inhibited division protein A [Capnocytophaga ochracea
           F0287]
 gi|314944984|gb|EFS97016.1| glucose inhibited division protein A [Capnocytophaga ochracea
           F0287]
          Length = 623

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 375/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGGGHAGAEAAAAAANMGASTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKDKVVGVRTSLGITIKAKSVVLTNGTFLNGVMHIGLKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE+   FSF  +      Q +
Sbjct: 181 GITECLVQHGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEQPQKFSFSAETQPLAVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDHHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVAGFEKVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AG+N+  K  +       R ++YIGV+IDDL +KG
Sbjct: 361 IENLYFAGQINGTTGYEEAAAQGLMAGVNAVLKIRERAPFVLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+G ++G + E R + +    ++ +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADRRLTPLGYEIGTVSEARYRAWEAKERKVSGFITYIK 480

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDAR-----KFSSLV 532
            L +T + ++     ++     +     + LS PD ++ +  +I   A      + +   
Sbjct: 481 ELSVTPEEVNPILEKYESSPMRQGDKLQKVLSRPDVTLADFETIDRIAEYIKKNELTEEE 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
               ++E  YA Y  ++   A ++   E   IP +FDY  + +LS E +EKL  ++P  L
Sbjct: 541 KTCAEVEVKYAGYIEKERNNADKLNRLESMRIPDNFDYDKIVSLSFEGREKLKKIRPVTL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++LLIY+ +
Sbjct: 601 SQASRISGVSPADISILLIYMGR 623


>gi|295131913|ref|YP_003582589.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zunongwangia profunda SM-A87]
 gi|294979928|gb|ADF50393.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zunongwangia profunda SM-A87]
          Length = 623

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/624 (42%), Positives = 378/624 (60%), Gaps = 10/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ YDVIV+G GHAG EAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNKEYDVIVVGAGHAGSEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDAMGGYSGLVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLRLEQTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E   I  +       IR  +VV T GTFL G+IHIG  +   GR G++ + 
Sbjct: 121 QEMVHGLIIENGKIKGVRTSLGIEIRAKSVVCTNGTFLNGLIHIGDKQRGGGRAGEAAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    +   F+ GR+KTGTP R+DG+++ + K  +Q  DE    FS+  + K  ++Q  
Sbjct: 181 GITKDLIDAGFEAGRMKTGTPPRVDGRSLDYSKMIEQPGDEVPGKFSYSDETKPLSKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+      S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CYMTYTSNEVHDILRSGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q   + ++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTVEVYVNGFSTSLPEDVQFAALSSVAGFENVKFFRPGYAIEYDYFPPTQLQHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA QG++AGIN+A K  + D     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLYFAGQINGTTGYEEAACQGMMAGINAALKVQEKDPFILQRNEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT    KLG   E R ++  +  ++     S LK
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTERSYKLGLASEDRMRKMEEKKEKSLAFVSFLK 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSL 531
              +  ++ +     +      ++   ++  S P+ ++ ++    P   +        + 
Sbjct: 481 DTSVVPEDANPVLADYNSSPMKQSDKIFKIFSRPNIAMDDVRKF-PGVEEYIQQHHLDTE 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E+ +I+  Y+ Y  ++   A ++   E   IPK FDYS + ++S E +EKL+ ++P N
Sbjct: 540 MLEQTEIQIKYSGYIQKEKNNADKLNRLEDVKIPKHFDYSKIKSMSFEAREKLNKIQPAN 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P  +++LL+Y+ +
Sbjct: 600 VSQASRISGVSPNDISVLLVYMGR 623


>gi|260467200|ref|ZP_05813377.1| glucose inhibited division protein A [Mesorhizobium opportunistum
           WSM2075]
 gi|259029053|gb|EEW30352.1| glucose inhibited division protein A [Mesorhizobium opportunistum
           WSM2075]
          Length = 629

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/604 (55%), Positives = 446/604 (73%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVREIDA+DGLMGRVAD
Sbjct: 14  HAGCEAASAAARAGARTALVTLRFDTIGVMSCNPAIGGLGKGHLVREIDAMDGLMGRVAD 73

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
           AAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDVI+ EV  F  E+  I
Sbjct: 74  AAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVIEAEVLDFEIEEGRI 133

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
           +++++ +   + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S  L  +  +  F  G
Sbjct: 134 AAVLLANGRRLACGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASLGLSATMSRAGFALG 193

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           RLKTGTP RLDG+TI W   E Q AD+  +PFS MTD+I   QI+CGITRT   TH +I 
Sbjct: 194 RLKTGTPPRLDGRTIDWASLESQAADDDPVPFSLMTDRIETPQIDCGITRTTTATHELIR 253

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
            N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+ D VYPNGIST+L
Sbjct: 254 ANLARSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDDTVYPNGISTSL 313

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           PE++Q   ++TIPGLE+  +++PGYAIEYD+++P+EL  TLETK+++GLFLAGQINGTTG
Sbjct: 314 PEDVQLDILKTIPGLERAVMLQPGYAIEYDHVDPRELSQTLETKRVAGLFLAGQINGTTG 373

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAA QGL+AG+N+AR+++  + I  SRT++YIGVM+DDLTS+G+ EPYRMFTSRAE+R
Sbjct: 374 YEEAAGQGLLAGLNAARRASGGEQIVLSRTEAYIGVMVDDLTSRGISEPYRMFTSRAEFR 433

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS 494
           +SLR DNAD RLTP+  KLG    +R +R+   ++  +  R+L  +L +T    +   + 
Sbjct: 434 LSLRADNADERLTPLAAKLGIASAQRMQRYGDAMRRLDEARALATALTMTPNEAARHGLE 493

Query: 495 FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
             +DG  R+ YE L+YPD  +  L  + P      +   ERL+ E+ Y+ Y  RQ  +  
Sbjct: 494 INRDGVRRSGYELLAYPDVDVAWLARVEPGFGAVDAKTAERLETEAKYSVYLDRQKTDVA 553

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EGMTPAAL +++ +++
Sbjct: 554 QIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEGMTPAALAIIVAHVR 613

Query: 615 KNTV 618
            +  
Sbjct: 614 HHEA 617


>gi|84501194|ref|ZP_00999399.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
 gi|84390485|gb|EAQ02973.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
          Length = 596

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/577 (54%), Positives = 401/577 (69%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA TAL+T +   IG MSCNPAIGGLGKGHLVREIDA+DG+MGR+AD AGIQFR+LN +
Sbjct: 1   MGARTALVTLRKDGIGVMSCNPAIGGLGKGHLVREIDAMDGVMGRIADRAGIQFRLLNRR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR Q+DR++YR AM  E+    NL +++ EV  F      +S + +     + 
Sbjct: 61  KGPAVQGPRAQSDRKIYRTAMLAELEGTPNLTILEDEVTDFVMNGGQVSGVALNGADTLT 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
               VLTTGTFLRGVIHIG +  P GRMGD PS  L      F    GRLKTGTP RLDG
Sbjct: 121 AGATVLTTGTFLRGVIHIGDVSRPGGRMGDRPSVRLAERIDDFGLPLGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI WD  E+Q  D+  + FSF++ K+   Q+ CGIT TN ETH II  N+  SA+Y G 
Sbjct: 181 RTINWDVLEEQPGDDTPVLFSFLSSKVMAPQVSCGITHTNEETHEIIRANLNRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I   GPRYCPSIEDK+VRF E+  HQIFLEPEG +   VYPNGIST+LP+++Q  ++ +I
Sbjct: 241 IDGVGPRYCPSIEDKVVRFAEKTSHQIFLEPEGADDPTVYPNGISTSLPQDVQEDYVHSI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE+  I++PGYAIEYDY++P+ L   L+ K + GLFLAGQINGTTGYEEAAAQGLVAG
Sbjct: 301 RGLEQTEIVQPGYAIEYDYVDPRVLDLRLQLKSVPGLFLAGQINGTTGYEEAAAQGLVAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A  S   D + FSR+DSYIGVMIDDLT++GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAAASSLGSDAVQFSRSDSYIGVMIDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TP G+++GCIG+ R +RF+  ++     R+L++S   + K   S  I   QDG  R+AY+
Sbjct: 421 TPKGLEVGCIGDERSRRFSDKMERLEAGRALMESTSYSPKEALSVGIKLSQDGNRRSAYQ 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            LS  D S   L ++ P        + ++L  ++ YA+Y  RQ  + + I+ +E   IP+
Sbjct: 481 LLSLQDVSFDQLEALDPRLCSVDQGIQDQLAKDALYASYILRQEKDVEAIRRDEAHAIPE 540

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           DF Y  L  LS+EL+ KLS  +P NL QA+K+EGMTP
Sbjct: 541 DFGYGDLDGLSSELRSKLSAARPANLAQAAKVEGMTP 577


>gi|115522412|ref|YP_779323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisA53]
 gi|122297910|sp|Q07UP1|MNMG_RHOP5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|115516359|gb|ABJ04343.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisA53]
          Length = 622

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/588 (52%), Positives = 409/588 (69%), Gaps = 1/588 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ ST+G+MSCNPAIGGLGKGHLVRE+DALDGLMG+VADA GIQFR+LN +KGPAVR
Sbjct: 32  LLTHRFSTVGAMSCNPAIGGLGKGHLVREVDALDGLMGQVADAGGIQFRMLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LY  AMQ  I +  NL VI+ E     T    I+ I + D        VV+
Sbjct: 92  GPRAQADRKLYAAAMQAAIRAIANLTVIEAEADDLLTADGRITGIRLADGREFSTGAVVV 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IH+G+   PAGR+ ++P+  L  +F +  F  GRLKTGTPARLDGKTI W+
Sbjct: 152 TTGTFLRGLIHLGEQSWPAGRIDEAPALGLSAAFERIGFALGRLKTGTPARLDGKTIYWE 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+   PFS +T +I+N QI CGITRT   TH +I  N+  S +YSG I+S GP
Sbjct: 212 AVEMQPGDDPPEPFSVLTARISNPQILCGITRTTPATHDLIRANVHRSPMYSGQIQSSGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIVRFG+R+GHQIFLEPEGL+   VYPNGIST+LPEE+Q   + TIPGLE+ 
Sbjct: 272 RYCPSIEDKIVRFGDRDGHQIFLEPEGLDDATVYPNGISTSLPEEVQRGILATIPGLERC 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           N++RPGYAIEYD+++P+EL PTL+ K++ GLFLAGQINGTTGYEEAAAQGLVAG+N+AR 
Sbjct: 332 NMLRPGYAIEYDHVDPRELQPTLQAKRMRGLFLAGQINGTTGYEEAAAQGLVAGLNAARC 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   + + F R D Y+GVMIDDL ++G+ EPYRMFTSRAEYR++LR DNAD RLT  G+ 
Sbjct: 392 AGGGEGVVFDRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDQGIA 451

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
            G +G  R     + +      ++  +SL +T    +   ++  +DG  R+A+E L+YP+
Sbjct: 452 HGLVGAERAAFHRRKMAALAAAKTWARSLAVTPNEAAKHGLALNRDGVRRSAFELLAYPE 511

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
               ++  I P+       +   L+I++ Y  Y  RQ  + +  + +E  ++  D DYS 
Sbjct: 512 VGWDDVRRIWPELGAVEPAIAVHLEIDAKYDVYLQRQTADVEAFRRDEGLVL-TDIDYSL 570

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           +P LSNE + KL   +P  + QA +++G+TPAAL +L  Y+++   + 
Sbjct: 571 VPGLSNEARGKLEKARPRTVGQAGRLDGITPAALGILAAYLRREARRR 618


>gi|257124927|ref|YP_003163041.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia buccalis C-1013-b]
 gi|257048866|gb|ACV38050.1| glucose inhibited division protein A [Leptotrichia buccalis
           C-1013-b]
          Length = 640

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/634 (40%), Positives = 384/634 (60%), Gaps = 24/634 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDVIV+G GHAG EAA  +A+LG  TA+ T     IG MSCNP++GG  K HL +E+D
Sbjct: 2   RNYDVIVVGAGHAGIEAALASARLGLKTAVFTITLDNIGVMSCNPSVGGPAKSHLAKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y   M++ I +Q+NLD +Q  
Sbjct: 62  ALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIYAREMKKTIENQQNLDTVQDI 121

Query: 124 VAGFNTEKN------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     E+             +I  I  +         VVL TGTFLRG+++IG  ++  
Sbjct: 122 VTELIVEEIEILEGNSKRIEKVIKGIRTKTGMEFFAKAVVLATGTFLRGLLYIGDKRVKG 181

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA-DERLIPFSFMT 230
           GRMG+  ++ L +S     F   R KTGTP RLD +T+  +K E+Q    +  + FS  T
Sbjct: 182 GRMGELSADDLTDSLKSLGFKMDRFKTGTPPRLDIRTLNLEKLEEQPGITDIPLKFSMRT 241

Query: 231 ---DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +   Q+ C +TRTN  TH+II++N+  + +Y+G I S GPRYCPSIEDK+V+F +
Sbjct: 242 PNDEVLEKPQLSCYLTRTNETTHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVKFND 301

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           ++ H +FLEPEG +T  VY +G+ST+ P  +Q + + TI GLE  +I+R GYA+EYD ++
Sbjct: 302 KDSHHLFLEPEGFDTAEVYISGLSTSYPASLQQKIVNTIEGLENAHIMRYGYAVEYDIVD 361

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P EL  TLET+K+ GL+L+GQ+NGT+GYEEAAAQG++AGIN+A K    +     R  SY
Sbjct: 362 PSELDYTLETRKVKGLYLSGQLNGTSGYEEAAAQGIIAGINAALKIKGQEPFILDRESSY 421

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG MIDDL +K + EPYRMFT+R+E+R+ LR DNAD RL+    K+G + ++      + 
Sbjct: 422 IGTMIDDLINKELFEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLLDKKYYDIVQEK 481

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPD 524
            +        L+++ L S N     I  K         T  E L  P  + Q++  I   
Sbjct: 482 KKNVKKTIENLENIKLGSSNQRLMEILDKYNESLKSGTTLKEILRRPKVTYQDIKYIAEI 541

Query: 525 AR-----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
                   F      ++++++ Y  Y  + +   ++ +  + + IPK+FDY S+  ++ E
Sbjct: 542 IENVPNLNFDDETEYQIEVQTKYEGYIAKAIQIMEKQQKLDDKKIPKNFDYDSMKGITRE 601

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            K++L   +P+N+ QAS++ G+TPA +++LL+Y+
Sbjct: 602 AKQRLKENRPYNVGQASRMSGVTPADISVLLMYL 635


>gi|33864441|ref|NP_896001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9313]
 gi|81170570|sp|Q7TUJ1|MNMG_PROMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33641221|emb|CAE22351.1| Glucose inhibited division protein A family [Prochlorococcus
           marinus str. MIT 9313]
          Length = 653

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/637 (42%), Positives = 381/637 (59%), Gaps = 20/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVI++GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TEHFDVIIVGGGHAGCEAAITAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  +Q RVLN  +GPAV   R Q D+ LY   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATALQKRVLNASRGPAVWALRAQTDKRLYSRQMLQLLQQTANLSLREA 127

Query: 123 EVAGFNTEKN----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            V G   + +                 I+ +     S+ R   VVLTTGTFL G I +G 
Sbjct: 128 MVTGLEVKGDPSGGGEHWEPAQGHAAQITGVRTYFGSIYRAQAVVLTTGTFLGGQIWVGN 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
             +PAGR G+  +  L  +     F T RLKTGTPAR+D ++I  D+ E+Q +D     F
Sbjct: 188 QSMPAGRAGEQAAEGLTEALESLGFQTNRLKTGTPARVDRRSIALDQLEEQPSDAADRFF 247

Query: 227 SFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           SF  T  ++  Q+ C ITRT   TH++I EN++ + IY G + S GPRYCPSIEDKIVRF
Sbjct: 248 SFDPTAWVSGEQMSCHITRTTASTHQLIKENLELTPIYGGFLDSKGPRYCPSIEDKIVRF 307

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +++ HQIFLEPEG +T  +Y  G ST LPE +Q   +RT+PGLE+  ++RP YA++YDY
Sbjct: 308 ADKDSHQIFLEPEGRDTPEIYVQGFSTGLPERLQLDLLRTLPGLEQCVMLRPAYAVDYDY 367

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           +   +L P+L+TK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R  
Sbjct: 368 LPATQLSPSLQTKRVKGLFTAGQLNGTTGYEEAAAQGLVAGLNAARLVQGQEQVQFPREG 427

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG MIDDL SK + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I  RR + F 
Sbjct: 428 SYIGTMIDDLVSKDLHEPYRVLTSRSEYRLILRGDNADRRLTPLGYQLGLIDARRWQLFQ 487

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSIC 522
           +        +  L+   L + + ++ ++  K       + T  + L  P     +L    
Sbjct: 488 RKQTALEDEKQRLEKQRLKASDPAAPALEAKTGATIKGSITLADLLRRPGVRSADLIEHG 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
               + +  V E  +I+  Y+ Y  RQ  +  ++K + +R +P + DY+++  LS E +E
Sbjct: 548 LVDPELALGVREGAEIDIKYSGYLQRQQQQIDQLKRQSQRRLPANLDYANISTLSKEARE 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KL+ + P N  QAS+I G++ A L  LL++++    +
Sbjct: 608 KLTAVGPLNFAQASQIPGVSKADLTALLVWLELQKRR 644


>gi|163848990|ref|YP_001637034.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526950|ref|YP_002571421.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroflexus sp. Y-400-fl]
 gi|205831520|sp|A9WKL7|MNMG_CHLAA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|163670279|gb|ABY36645.1| glucose inhibited division protein A [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450829|gb|ACM55095.1| glucose inhibited division protein A [Chloroflexus sp. Y-400-fl]
          Length = 651

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/645 (40%), Positives = 355/645 (55%), Gaps = 29/645 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA  AA+LG  T L+T     +  MSCNP+IGG  KGHLVRE
Sbjct: 1   MQTRYDVIVVGAGHAGCEAAHAAARLGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMGR+ D + IQ R+LN  KGPAV+  R Q D+ LY   M+  +    NLD+ Q
Sbjct: 61  IDALGGLMGRITDRSAIQIRLLNESKGPAVQSLRAQCDKRLYARLMKETLERVPNLDLRQ 120

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V             ++            V+LTTGTFLRG    G+    AGR G++P+
Sbjct: 121 AMVERIAPPNADTQCFTVTTHTGWRYLAPAVILTTGTFLRGRAITGEAMWGAGRAGEAPA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------ 233
            +L        F   RLKTGTP RL   TI +  TE Q   +  + F     ++      
Sbjct: 181 MALSEDLAALGFPLVRLKTGTPPRLAAATIDFSLTELQPGSDTPLSFGHYYPELGETIPP 240

Query: 234 ------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C    T  E H II EN+  + ++SG I+  GPRYC
Sbjct: 241 PEYHGPPAPVYPHPQLDGWRPQLPCYQVHTTPEFHAIIRENLHRAPLFSGIIEGVGPRYC 300

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIVRF ++  H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L  V ++
Sbjct: 301 PSIEDKIVRFADKERHGLFLEPEGWTTSEVYVQGCNTSLPEDVQWAMLRSIPALRNVELM 360

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R GYAIEYD +   E+   ++T+++ GLF AGQINGTTGYEEAAAQGL+AGIN+A     
Sbjct: 361 RIGYAIEYDAVATGEITADMQTRRLRGLFFAGQINGTTGYEEAAAQGLMAGINAAHYVQG 420

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
              +   R ++YIGV+IDDLT+K + EPYRMFTSRAEYR+ LR DNAD RLTP+  +LG 
Sbjct: 421 KPPVILGRAEAYIGVLIDDLTTKEIREPYRMFTSRAEYRLLLRGDNADLRLTPLAYRLGL 480

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPD 512
           +   R        Q+       ++   +      + S+     K   +  T  E L+ P+
Sbjct: 481 VDGERAAVVEARRQQTEHALQQMRERRIFPSAAVNASLEAHGIKPISQPVTVAEVLARPE 540

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                L    PD    S  VIE+++I   Y+ Y  RQ  E   ++  E R IP DFDY+S
Sbjct: 541 VRYTQLRDALPDLPALSDAVIEQVEIGCKYSGYIARQEREVARMQKMEHRRIPPDFDYTS 600

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           LP L NE ++ L   +P  L QA ++ G+ PA + ++L  +++  
Sbjct: 601 LPGLRNEARQVLMRFRPATLGQAGRLAGINPADVAIILFALERRQ 645


>gi|269123717|ref|YP_003306294.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
 gi|268315043|gb|ACZ01417.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
          Length = 635

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/629 (40%), Positives = 387/629 (61%), Gaps = 17/629 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDV+VIG GHAG EAA  +A+LG  TA+ T     IG MSCNP++GG  K HLV+E
Sbjct: 1   MDNKYDVLVIGAGHAGIEAALASARLGLKTAMFTITLDNIGVMSCNPSLGGPAKSHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + +Q R+LN KKGPAVR  R+QADR++Y   M++ + +QENLDVIQ
Sbjct: 61  LDALGGQMSKTIDKSFVQIRILNTKKGPAVRSLRSQADRKIYARNMKKIVENQENLDVIQ 120

Query: 122 GEVAGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
             V     EK      ++  I  ++       +V++ +GTFL G++++G   I  GRMG+
Sbjct: 121 DIVTELIYEKDEIKDFVVRGIKTKNGLEFLAKSVIICSGTFLNGLLYVGDKIIEGGRMGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDK--- 232
             +  L +S +    D  R KTGT  R+D +TI +D  E+Q  +  ++I FS  T     
Sbjct: 181 LSAKDLTSSLVDMGLDIRRFKTGTSPRIDARTINFDILEEQPGEMSKVIKFSNSTPDEVI 240

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGH 291
              +Q+ C ITRTNL+ H+II +N+  S +++G IK S GPRYCPSIEDK+V+F +++ H
Sbjct: 241 RNTKQLSCYITRTNLDLHKIIKDNLNRSPLFNGTIKDSVGPRYCPSIEDKVVKFNDKDSH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            +FLEPEG +T+ VY +G+ST+ P ++Q + +R I GLE   I+R GYA+EYD++NP EL
Sbjct: 301 HLFLEPEGFDTNEVYISGLSTSYPADLQQKMVRQIEGLENARIMRYGYAVEYDFVNPNEL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETKK+ GL+LAGQINGT+GYEEAA QGL+AGIN++      + +   R +SYI  +
Sbjct: 361 EYTLETKKVKGLYLAGQINGTSGYEEAAVQGLIAGINASLAIKGEEPLLLERNNSYIATL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +K + EPYRMFT+R+EYR+ LR DNAD RL+ IG ++G + E    +  + +   
Sbjct: 421 IDDLITKEIEEPYRMFTARSEYRLILREDNADLRLSHIGYRIGLVDESTYSKVLEKLNNV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARK- 527
                +L++  L   N     I  K +       T  E L  P F+  ++  I  D    
Sbjct: 481 EKTIKVLENTKLGVSNKKLVEILEKNNETLKSGTTLKELLRRPSFTYDDIKYIAEDIEME 540

Query: 528 ---FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
              F      +++++  Y  Y  +     ++ +  E+++IP + ++  +  ++ E K+KL
Sbjct: 541 NICFDEETEYQIEVQIKYEGYINKANAMIEKQRKLEEKIIPSELNFLEMKGITGEAKQKL 600

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +  KP  + QAS+I G+TPA ++++L+Y+
Sbjct: 601 NERKPHTVGQASRIAGVTPADISVILMYL 629


>gi|225010334|ref|ZP_03700806.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-3C]
 gi|225005813|gb|EEG43763.1| glucose inhibited division protein A [Flavobacteria bacterium
           MS024-3C]
          Length = 622

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 386/622 (62%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGHAG EAAA AA +GAST L+T    +IG MSCNPA+GG+ KG +VR
Sbjct: 1   MFQDKYDVIVVGGGHAGAEAAAAAANMGASTLLVTMNLQSIGQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PRTQ DR  +    +  +    N+D  
Sbjct: 61  EIDALGGYSGIVSDLSAIQFKMLNKSKGPAMWSPRTQNDRMRFAEEWRLALERTTNVDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+    E N ++ +       I   +VVLT GTFL G+IHIG+ ++  GR G+  S+
Sbjct: 121 QDMVSSLIIEGNTVTGVKTSLGIPIYGKSVVLTNGTFLNGLIHIGERQLGGGRAGEKASS 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +    +   F++GR+KTGTP R+DG+++ +     Q  D +   FS+   K    Q +C
Sbjct: 181 GITEQLVALGFESGRMKTGTPPRVDGRSLDYSVMIPQPGDAQPEKFSYTNTKPLATQRDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+   H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 241 HMTHTSSLVHDLLREGFDRSPMFNGSIQSLGPRYCPSIEDKINRFADKDSHQLFVEPEGW 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  VY NG ST+LPEE+Q + +R++ G EKV   RPGYAIEYDY  P +L  +LETK I
Sbjct: 301 DTVEVYVNGFSTSLPEEVQFKALRSVKGFEKVKFFRPGYAIEYDYFPPTQLTHSLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAA+QGL+AGIN+A K  + D     R ++YIGV+IDDL +KG 
Sbjct: 361 SGLFFAGQINGTTGYEEAASQGLMAGINAALKVQEKDPFTLQRDEAYIGVLIDDLITKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLTP+G  +G   E R K           L S  + 
Sbjct: 421 DEPYRMFTSRAEYRTLLRQDNADFRLTPMGHAIGLASEDRLKAMELKASASENLVSFFRE 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVI 533
             +    ++    S+      ++   ++  S P+ ++ ++ S+           F+  V+
Sbjct: 481 TSVKPAEINDQLASVGSAPISQSGKLFKVFSRPNVTMDHMLSVDSVGSFVSENNFAREVL 540

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +I+  YA Y  ++   A +++  E   IP DFDYS L +LS E +EKL  ++P ++ 
Sbjct: 541 EQAEIQIKYAGYIEKEKNNADKLQRLEHVKIPSDFDYSLLKSLSYEAREKLQEIQPVSIA 600

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++LL+++ +
Sbjct: 601 QASRISGVSPSDISVLLVFLGR 622


>gi|228472157|ref|ZP_04056923.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276360|gb|EEK15084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 619

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/594 (41%), Positives = 353/594 (59%), Gaps = 8/594 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LIT +   +  MSCNPA+GG+ KG +VREIDAL G MG + D   IQF++LN  KGP
Sbjct: 26  KTLLITMQLQNMAQMSCNPAVGGIAKGQIVREIDALGGYMGIITDQTAIQFKMLNKSKGP 85

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           A+  PR Q+DR  +  A + ++    NLD  Q  V     E    + +     S IR  +
Sbjct: 86  AMWSPRAQSDRMRFSEAWRLQLERLPNLDFFQEMVTEVLIEGGKATGVKTSLGSEIRAKS 145

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLT GTFL G+IHIG  ++  GR G+  +  +    +   F+ GR+KTGTP R+DG+++
Sbjct: 146 VVLTNGTFLNGIIHIGLKQLGGGRAGEKAAKGITECLVAHGFEAGRMKTGTPPRVDGRSL 205

Query: 210 IWDKTEKQFADERLIPFSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
            + K   Q  DE    FS++   +    Q++C +T T+ E H I+      S +++G I 
Sbjct: 206 DYSKMTPQPGDENPEKFSYLPLTQPLTHQLDCYMTYTSEEVHDILRTGFDRSPMFTGIIH 265

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
             GPRYCPSIEDKI RF +++ HQIF+EPEG +T  +Y NG ST+LPEE+Q+  +R + G
Sbjct: 266 GVGPRYCPSIEDKINRFADKDRHQIFVEPEGWHTVEMYVNGFSTSLPEEVQYTALRKVAG 325

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            E+V  +RPGYAIEYDY  P +L  TLETK I  LF AGQINGTTGYEEA AQGL+AGIN
Sbjct: 326 FEQVKFLRPGYAIEYDYFPPTQLKATLETKIIENLFFAGQINGTTGYEEAGAQGLIAGIN 385

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++RK  +       R ++YIGV+IDDL +KG  EPYRMFTSRAEYR  LR DNAD RLTP
Sbjct: 386 ASRKVQEQSPFVLKRNEAYIGVLIDDLITKGTEEPYRMFTSRAEYRTLLRQDNADMRLTP 445

Query: 449 IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF--KQDGKTRTAYE 506
           +G  LG   E R +   +   +        K   +T +  +     +      +     +
Sbjct: 446 MGYALGLASEERMRLLEEKQTKTAAFVQFFKETSITPEEANPLLEKYDSSPMKQGDKMAK 505

Query: 507 FLSYPDFSIQNLFSI-----CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            L+ P+ ++++   +        A++ S  V+E  +IE  YA Y  ++   A ++   E 
Sbjct: 506 VLARPNITVEDFMELPQVKAFAHAQQLSKEVLESTEIEIKYAGYIEKEKNNADKLNRLED 565

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             IP+ F+Y  L +LS E +EKL  ++P  L QAS+I G++PA +++LL+Y+ +
Sbjct: 566 IRIPESFNYDKLTSLSFESREKLKKIRPTTLSQASRISGVSPADISILLVYMGR 619


>gi|146298764|ref|YP_001193355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacterium johnsoniae UW101]
 gi|205831512|sp|A5FL86|MNMG_FLAJ1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146153182|gb|ABQ04036.1| glucose inhibited division protein A [Flavobacterium johnsoniae
           UW101]
          Length = 623

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 376/623 (60%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA LG+ T L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFLEEYDVIVVGAGHAGSEAAAAAANLGSKTLLVTMSLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDALGGYSGIVSDRTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRMMLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   E   I  I       IR  +VVLT GTFL G+IHIG+ +   GR G+S + 
Sbjct: 121 QEMVKGLIIENGKIKGIRTSLGVEIRSKSVVLTNGTFLNGLIHIGEKQFGGGRAGESAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +K  F+ GR+KTGTP R+DG+++ + K  ++  D +   FS+    K   +Q  
Sbjct: 181 GITEDLVKAGFEAGRMKTGTPPRVDGRSLDYSKMNEEKGDAKPDKFSYSDLTKPLTQQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+L  H I+ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EPEG
Sbjct: 241 CYMTYTSLNVHDILREGFDRSPMFNGRIKSLGPRYCPSIEDKINRFADKERHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE+IQ + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTCEVYVNGFSTSLPEDIQFKALRSVAGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN+  K ++   +   R ++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAASQGLMAGINAHLKVHEKAPLILKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP+  ++G   E R +R    + E   + +  K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPMSFEIGLASEDRMRRMEHKLNESEKMVAFFK 480

Query: 480 SLVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
              +T    +   I  +     +    ++  S P   ++++                  +
Sbjct: 481 ETSVTVAETNPILIEKESAPISQGDKMFKVFSRPQIELEDMLKFEKVDSYIKENNLDEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+  I+  Y+ Y  ++   A ++   E+  IP++FDY+ + ++S E K+KLS ++P  +
Sbjct: 541 VEQAVIQVKYSGYIEKERNNADKLNRLEEVKIPENFDYNKIKSMSIEAKQKLSKIRPVTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++LLIY+ +
Sbjct: 601 SQASRISGVSPSDISVLLIYMGR 623


>gi|146328969|ref|YP_001209581.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dichelobacter nodosus VCS1703A]
 gi|166222931|sp|A5EV65|MNMG_DICNV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146232439|gb|ABQ13417.1| glucose inhibited division protein A [Dichelobacter nodosus
           VCS1703A]
          Length = 632

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/620 (48%), Positives = 396/620 (63%), Gaps = 11/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L+T    TIG MSCNP+IGG+GKGHLV+EIDAL
Sbjct: 7   FDVIVVGGGHAGVEAACAAARMGCDTLLLTQNIETIGQMSCNPSIGGIGKGHLVKEIDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+M R  D AGI +R+LN +KG AV+  R QADR LY+ A++  +  QE+L V Q EV+
Sbjct: 67  DGVMARATDRAGIHWRILNRRKGAAVQATRAQADRVLYKAAVRALVEKQEHLRVFQTEVS 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G       +  +  Q        TV++T GTFL G I++G      GR GD  +  L N 
Sbjct: 127 GILLNGETVIGVSSQHKIDFHAKTVIITAGTFLGGKIYVGLNYFVGGRAGDPAALELANK 186

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITR 244
                F+T R+KTGTP R+D ++I + +  +Q  DE L  FS++ +     RQI C IT 
Sbjct: 187 LRDLPFETHRMKTGTPPRIDARSIDFSQMSEQLGDEPLPVFSYLGNVNEHPRQIPCHITH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIK-SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           TN +TH II E I  + +Y+G IK ++GPRYCPSIEDK++RF ++  HQIFLEPE L T+
Sbjct: 247 TNTQTHDIIREYIDQAPMYAGVIKDAFGPRYCPSIEDKVMRFHDKTSHQIFLEPESLTTN 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP E Q +++ TI GLE+  I RPGYAIEYD+ NP+ L  TLETK I  L
Sbjct: 307 EIYPNGISTSLPFEAQLKYVHTIKGLEQAIITRPGYAIEYDFFNPQGLRYTLETKAIKNL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+A +    +     R  +Y+GV+IDDL ++G  EP
Sbjct: 367 FFAGQINGTTGYEEAAAQGLLAGINAALRVYDKEGWYPRRDQAYLGVLIDDLITQGTREP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+ LR DNAD RLT IG +LGC+G  R K+F   +         LK L++
Sbjct: 427 YRMFTSRAEHRLLLREDNADQRLTAIGYQLGCVGSARMKQFDAKMTAVAHASDQLKKLLI 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--PDARKFSSLVIERLQIESS 541
            +  LS              A E L  P+  ++ + ++   P     S  VIE++ I + 
Sbjct: 487 PADRLSGL-------THNTYAAELLKRPEIDVRAVLALANVPPDEYPSDEVIEQIDIAAK 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  E  +++    + +P  FDY  +  LS EL EKL  ++P +L QA++I GM
Sbjct: 540 YSGYIQRQYEEVAKLQKNRAQKLPVPFDYRKVTGLSAELAEKLQKVQPHDLDQAARIAGM 599

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TPAAL+LLLIY KK+T  L+
Sbjct: 600 TPAALSLLLIYFKKHTQPLS 619


>gi|319780613|ref|YP_004140089.1| glucose inhibited division protein A [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166501|gb|ADV10039.1| glucose inhibited division protein A [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 626

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/614 (57%), Positives = 448/614 (72%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+V+GGGHAGCEAA+ AA+ GA TAL+T +  TIG MSCNPAIGGLGKGHLVRE
Sbjct: 1   MTNRYDVVVVGGGHAGCEAASAAARAGARTALVTLRFDTIGVMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+DGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR+LYRLAMQ  I  Q +LDV++
Sbjct: 61  IDAMDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRKLYRLAMQEAIRQQNDLDVVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV  F      I+++++ D   + C  VVLTTGTFLRG+IHIG+ KI AGRM +  S  
Sbjct: 121 GEVLDFEIADGQITAVLLADGRRLVCGAVVLTTGTFLRGLIHIGEKKIVAGRMNEQASLG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS MTD IT  QI CG
Sbjct: 181 LSATMDRAGFKLGRLKTGTPPRLDGRTIDWASLESQAADADPVPFSLMTDCITTPQINCG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  SA+YSG I+  GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTTATHELIRANLGRSAMYSGSIEGVGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D VYPNGIST+LPE++Q   ++TI GLE+  +++PGYAIEYD+++P+EL  TLETK+IS
Sbjct: 301 DDTVYPNGISTSLPEDVQLDILKTITGLERAVMLQPGYAIEYDHVDPRELHQTLETKRIS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAA QGL+AG+N+AR++   + I  SRT++YIGVM+DDLTS+G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAGQGLLAGLNAARRAAGSEQIVLSRTEAYIGVMVDDLTSRGIA 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLR DNAD RLTP+  KLG    +R +R+   +Q  +  R L KSL
Sbjct: 421 EPYRMFTSRAEFRLSLRADNADERLTPVAAKLGIASAQRMRRYGDVMQNLDEARELAKSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +   +DG  R+ YE LSYPD  +  L  I            ERL+ E+ 
Sbjct: 481 TMTPNEAARHGLEINRDGVRRSGYELLSYPDVDVAWLGRIDSRFAAIDGKTAERLETEAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y+ Y  RQ  +  +I+ EE RLIP+  D++ +P LSNELK+K+   +P ++  A ++EGM
Sbjct: 541 YSVYLDRQKTDVAQIRHEESRLIPETVDFAGVPGLSNELKQKMQARRPRSIADAQRMEGM 600

Query: 602 TPAALNLLLIYIKK 615
           TPAAL +++ +++ 
Sbjct: 601 TPAALAIIVAHVRH 614


>gi|15644841|ref|NP_207011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori 26695]
 gi|2494734|sp|P56138|MNMG_HELPY RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|2313303|gb|AAD07281.1| glucose inhibited division protein (gidA) [Helicobacter pylori
           26695]
          Length = 621

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 372/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + E   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           +LT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 ILTPSKEVLKRLDELDENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|317181522|dbj|BAJ59306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori F57]
          Length = 621

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 370/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  +   V++TTGTFL+GV+HIG  +   GR G++ SNS
Sbjct: 121 EMTESLIIENDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRDLGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL  TLETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+       D     R ++YI V+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYISVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEKDFYEGLKKDKQEIQDHLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKVDGVS-----LLARDSFNPEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|242310097|ref|ZP_04809252.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter pullorum MIT 98-5489]
 gi|239523394|gb|EEQ63260.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter pullorum MIT 98-5489]
          Length = 637

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/631 (43%), Positives = 360/631 (57%), Gaps = 13/631 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA+ V+AK+G  T L+T     IG+ SCNPA+GGLGKGHLV+E+DAL
Sbjct: 3   YDVIVIGGGHAGIEASIVSAKMGCKTLLLTILVEQIGAASCNPAVGGLGKGHLVKEVDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG + D  GIQFR LN  KGPAVRG R Q D + Y++  +      +NL++ Q  V 
Sbjct: 63  GGVMGYITDKCGIQFRTLNASKGPAVRGTRAQIDMDRYKIIAREICYQTQNLEISQQIVE 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +        R   V+LTTGTFLRG IHIG+     GR G+ P+  L + 
Sbjct: 123 SLIVENQSVVGVKTSIGKEYRAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELGDC 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK------ITNRQIE 239
             +   + GRLKTGT AR+   +I +   EK + D     FS  T K       +  Q+ 
Sbjct: 183 LREMGLEVGRLKTGTCARIKASSINFAILEKHYGDIPTPYFSKQTQKELGNQEFSPTQLP 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N   + ++ G I+  GPRYCPSIEDK+ RF ++  HQ+FLEP+ 
Sbjct: 243 CYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEPQT 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L  +  Y NG++T+LP +IQ + I +I GLE   I+R GYAIEYDY+NP EL  TLETKK
Sbjct: 303 LEANEYYINGLTTSLPFDIQEEMIHSIEGLENAEIVRYGYAIEYDYVNPTELKHTLETKK 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              L+ AGQINGTTGYEEAAAQG+ AGIN++      + I   R ++YIGVMIDDL +KG
Sbjct: 363 YKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGREEIILKRNEAYIGVMIDDLVTKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMF+SRAEYR+ LR  NA  RL  +   LG + E   +   +  +        L 
Sbjct: 423 TKEPYRMFSSRAEYRLLLREGNAIFRLGELAYNLGLMQEDEYQELLRDKKAIMEGIEWLN 482

Query: 480 SLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSLV 532
           S  +T  N        I  ++     T     S   F I  L  IC          S   
Sbjct: 483 STTITPTNEILAFLDLIGEEKISDKTTWRTIASRRSFDIHKLLKICEIIPTPFVGLSERA 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E + IE+ YA Y  +Q      +       IP+DF +  +P LS E+ EKL    P +L
Sbjct: 543 LEEILIEAKYANYIEKQQNLIDNMDKMLSIKIPQDFSFDGIPGLSLEVIEKLKKFTPKSL 602

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
            +AS+I G+TPA+L +L +YI     K N++
Sbjct: 603 FEASEISGVTPASLEVLQLYIHLYHQKQNKL 633


>gi|331001497|ref|ZP_08325115.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parasutterella excrementihominis YIT 11859]
 gi|329568226|gb|EGG50043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parasutterella excrementihominis YIT 11859]
          Length = 636

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/631 (46%), Positives = 385/631 (61%), Gaps = 14/631 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y+VIV+GGG+AG EAAA  A++ A T L+TH    +G  SCNP+IGG+GK HLV+E+D
Sbjct: 7   NEYEVIVVGGGNAGIEAAAACARMKAKTLLVTHNLDNLGQQSCNPSIGGIGKSHLVKEVD 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL+ +  D +GIQFRVLN  KG AVR  R Q DR LY+  M+  I + ENL +I+  
Sbjct: 67  ALDGLIAKATDFSGIQFRVLNASKGAAVRATRAQIDRRLYKYQMRTRIEAIENLSLIEEA 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   ++ + ++    I+   VVL  GTFL G + IG+    AGR GD  S +L 
Sbjct: 127 VDALLLENGKVAGVYLRSGISIKAKAVVLCAGTFLNGKVFIGQTSYLAGRSGDPSSVNLG 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP-FSFMTDKITNRQ-IECG 241
            +  +      RLKTGTPARLDG+TI + K E+Q  D   +P FS+M     + Q + C 
Sbjct: 187 INLAELGLPKARLKTGTPARLDGRTIDFSKCERQLGDSEPVPVFSYMGSPEDHPQQVPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH  I + +  S +++G I+  GPRYCPSIEDKI +F  +N H +FLEPEGLN
Sbjct: 247 ITDTNQTTHDFIRKGLDRSPLFTGVIEGIGPRYCPSIEDKIHKFASKNSHHVFLEPEGLN 306

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T   YPNGIST+LP ++Q  FI +I GLE V+IIRPGYAIEYDY +P  L   LE+K+  
Sbjct: 307 TYEYYPNGISTSLPYDVQVNFIHSIKGLENVHIIRPGYAIEYDYYDPTHLKDNLESKEFD 366

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEAAAQGL+AGIN+  K    +     R  +Y+GVM++DL +KGV 
Sbjct: 367 NLFLAGQVNGTTGYEEAAAQGLMAGINAVLKIRDEEPFLLRRDQAYLGVMVNDLITKGVN 426

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+SLR DNAD RLT IG KLG + E R K F +  +     R  LKS+
Sbjct: 427 EPYRMFTSRAEYRLSLREDNADERLTEIGYKLGVVSEERWKFFQEKRERLARERERLKSI 486

Query: 482 VLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNL--------FSICPDARKFSS 530
            +    L   S+      +  K    Y  L  P+   Q L         S+ P     S 
Sbjct: 487 WVNPGVLDKFSLEEVVGAELSKESQLYVMLKRPEVDYQKLKLLKTKDGESLLP-PPYLSD 545

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E L  +  Y+ Y  +Q  E ++   + + +IP+DFDY S   LS E+ +KL  +KP 
Sbjct: 546 EDAETLTTKVKYSGYEDKQKAEVQKNLEKIETVIPEDFDYDSAKGLSFEITQKLKKIKPR 605

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            L +A  I G+TPAA+++LL+Y+K+   K  
Sbjct: 606 TLGEALNISGVTPAAISILLVYLKRYRGKKE 636


>gi|5672641|dbj|BAA82679.1| 77%-identity [Bacillus halodurans]
          Length = 579

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/568 (44%), Positives = 350/568 (61%), Gaps = 4/568 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G GHAG EA   AA++GA+T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   EFDVIVVGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M R  D   IQ R+LN  KGPAVR  R QAD+ LY+  M++ I  +ENL + QG V
Sbjct: 67  LGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEEENLLLRQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      ++    +  R   VV+TTGT+LRG I IG L   +G     PS +L  
Sbjct: 127 ERLIIEDGECRGVITNTGAEYRAKAVVVTTGTYLRGKIIIGDLAYESGPNNMQPSINLSY 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R++G+TI +DKTE Q  DE    FS+ T K    Q+ C +T 
Sbjct: 187 HLQELGFEMVRFKTGTPPRVNGETIDYDKTEIQPGDEVPRAFSYETTKYITDQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH+II +N+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQIFLEPEG +T  
Sbjct: 247 TGDKTHQIINDNLGRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPEGRHTSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G+ST+LPE++Q   +++IPGLEK  ++RPGYAIEYD I P +L+PTLETKK+ GLF
Sbjct: 307 VYVQGLSTSLPEDVQLDVLKSIPGLEKARMMRPGYAIEYDAIVPTQLWPTLETKKVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QG++AGIN+A +    D +   R+++YIGV+IDDL +KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAGQGIMAGINAALRVQGKDGLILDRSEAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RLT  G ++G I   R +RF +   +    +  L+S+ + 
Sbjct: 427 RLLTSRAEYRLLLRHDNADLRLTEKGYEIGLIARERYERFCEKKAQIAAEKKRLESITVK 486

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                N     +      +   A  FL  P+ + +++  + P    + S+ V E+++I+ 
Sbjct: 487 PSKEVNALLEEVGSAPLKEAVQANVFLKRPEVTYEHVAKVIPAPEQELSADVAEQVEIQI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            Y  Y  + + + +  K    + IP+  
Sbjct: 547 KYEGYISKMLQQVERAKKMNDKKIPRRL 574


>gi|304383737|ref|ZP_07366196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella marshii DSM 16973]
 gi|304335261|gb|EFM01532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella marshii DSM 16973]
          Length = 623

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/623 (41%), Positives = 364/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  +A +GA+T LIT   + I  MSCNPAIGG+ KG +VRE
Sbjct: 1   MKFYYDVLVIGGGHAGCEAATASANMGATTCLITMDMNKIAQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPA+  PR Q DRE +    +  +    NLD+ Q
Sbjct: 61  IDALGGQMGLVTDATAIQFRMLNRSKGPAMWSPRAQCDRERFIWEWRSILDHTPNLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      + +    +     + +   ++V+T GTFL GV+HIGK ++  GR+ +     
Sbjct: 121 DQAEELIVKNHTAVGVRTMWGAEMFAKSIVITAGTFLNGVMHIGKTQVQGGRLAEPAVLK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +     GR+KTGTP RLD ++I ++ TE Q  +     FSF+       Q+ C 
Sbjct: 181 FSESITQHGIRKGRMKTGTPVRLDKRSIHFEDTEIQKGESDFHQFSFIGKPRKLNQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              T  ++H ++   +K S +Y+G I+S GPRYCPSIE K++ F ++  H +FLEPEG  
Sbjct: 241 TFYTTPQSHEVLRLGLKDSPLYNGQIQSIGPRYCPSIETKLITFPDKQQHPLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P E+Q + +  IP L +  I RPGYAIEYDY +P +L  +LE+K IS
Sbjct: 301 TNEMYLNGFSSSMPMEVQIEALHQIPALREAKIYRPGYAIEYDYFDPIQLTHSLESKVIS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QGLVAGIN+A   N        R +SYIGV+IDDL +KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGLVAGINAAIHCNNGTPFIMHRDESYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT     LG     R   + +  +    + S  +  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTERAYHLGIAKRERYDYWQEKRENIQKILSFCEKT 480

Query: 482 VLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            L +K+++S    I      ++    + ++ P  S+  + SI P+              +
Sbjct: 481 SLKAKDINSALERIGTTPIQRSAKIIDLIARPQVSLNAIGSIIPELNDILNAPKNRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  +I+  Y  Y  R+ I A+++   E   I   F+Y  +  L+ E ++KL  + P  L
Sbjct: 541 IEATEIQIKYRGYVERERIIAEKMHRLENIKIKDRFNYMEMNQLATEARQKLQNINPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLLGR 623


>gi|332879861|ref|ZP_08447550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682238|gb|EGJ55146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 623

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/623 (42%), Positives = 369/623 (59%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFTTEYDVIVVGAGHAGAEAAAAAANMGAKTLLITMNLQHIAQMSCNPAVGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQF++LN  KGPA+  PR Q+DR  +  A + ++ S   LD  
Sbjct: 61  EIDALGGYMGIITDKTAIQFKMLNQSKGPAMWSPRAQSDRMRFSEAWRLQLESLPTLDFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QG V     EK+ +  +       I+  +VVLT GTFL GV+HIG  +   GR G+  + 
Sbjct: 121 QGMVNDLLIEKHKVVGVRTSLGISIKAKSVVLTNGTFLNGVMHIGMKQFGGGRAGEPAAY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIE 239
            +    ++  F+ GR+KTGTP R+D +++ + K   Q  DE    FSF       + Q +
Sbjct: 181 GITECLVQQGFEAGRMKTGTPPRVDARSLDFSKMIPQPGDEHPQKFSFSAATQPLQVQKD 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H I+      S ++ G I   GPRYCPSIEDKI RF +++ HQIF+EPEG
Sbjct: 241 CYMTYTSERVHNILRTGFDRSPMFQGIIHGVGPRYCPSIEDKINRFADKDRHQIFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPEE+Q+  +  + G EKV  +RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WHTVEMYVNGFSTSLPEEVQYAALSQVVGFEKVKFLRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  L+ AGQINGTTGYEEAAAQGL+AGIN+  K  + + +   R  +YIGV+IDDL +KG
Sbjct: 361 IEHLYFAGQINGTTGYEEAAAQGLMAGINAVLKIREREPLILKRDQAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD+RLTPIG ++G + E R + +    Q  +   + +K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADSRLTPIGYEIGTVSEERYRAWEAKEQRVDDFITYIK 480

Query: 480 SLVLTSKNLSSTSISF--KQDGKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
            L +T + ++     +      +     + L+ P  ++ +   +            S   
Sbjct: 481 ELSVTPEEVNPILEKYDSSPMKQGDKLQKVLTRPSVTLSDFEQLSKVSRYIAEHDLSQEE 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
               ++   YA Y  ++   A ++   E   IP++FDY  + +LS E +EKL  ++P  L
Sbjct: 541 KTCAEVAIKYAGYIEKEKNNADKLNRLESVRIPENFDYDKIVSLSFEGREKLKKIRPITL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++PA +++L+IY+ +
Sbjct: 601 SQASRISGVSPADISVLVIYMGR 623


>gi|321474459|gb|EFX85424.1| hypothetical protein DAPPUDRAFT_45739 [Daphnia pulex]
          Length = 671

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/633 (47%), Positives = 400/633 (63%), Gaps = 20/633 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            ++YDVIV+GGGHAG EA A AA++G  T L+THK  TIG MSCNP+ GG+GKGHL+RE+
Sbjct: 36  EKNYDVIVVGGGHAGTEACAAAARMGCKTLLLTHKIETIGEMSCNPSFGGIGKGHLMREV 95

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR+ D +GIQ++VLN +KGPAV GPR Q DR LY+  +Q E+    NL++   
Sbjct: 96  DALDGVCGRICDLSGIQYKVLNRRKGPAVWGPRAQIDRNLYKKHLQAELFETPNLEIRAA 155

Query: 123 EVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            V     E          +++ D++ I   +VV+TTGTFLRG I+IG    PAGRMGD P
Sbjct: 156 AVEDLIVENIDGHETCLGVLLADDTKISSRSVVITTGTFLRGQINIGLETYPAGRMGDKP 215

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
           +  L ++  +  F  GRLKTGTP RLDG+TI +   E Q  D+  IPFSFM D++    N
Sbjct: 216 AIGLSHTLERLQFKLGRLKTGTPPRLDGRTIDYSVCEIQRGDDPPIPFSFMNDRVWIEPN 275

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C ITRT+    RII++N+        +    GPRYCPSIE K++RFG R  HQ++L
Sbjct: 276 DQVNCHITRTSPAMERIILDNLHLDRHVQEET--RGPRYCPSIESKMLRFGGR-RHQVWL 332

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPE L+  VVYPNG+S  LP E+Q Q +RTIPGLEKV +IRPGY +EYDYI+P+++  TL
Sbjct: 333 EPESLDNHVVYPNGLSCTLPAELQFQMLRTIPGLEKVEMIRPGYGVEYDYIDPRQIRKTL 392

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK ++GLF AGQINGTTGYEEAAAQG++AG+N+  K   +      RT+ YIGV+IDDL
Sbjct: 393 ETKPVNGLFFAGQINGTTGYEEAAAQGIIAGLNAGLKVKNMPSFTIDRTEGYIGVLIDDL 452

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T  G  EPYRMFTSRAE+R+SLRPDNAD RLT      GC+ + R  R       +N   
Sbjct: 453 TRIGAPEPYRMFTSRAEFRLSLRPDNADFRLTEKAFPTGCVSQARYDRCVNTRLTHNDAV 512

Query: 476 SLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYP----DFSIQNLFSICPDAR---- 526
           +LLKS+           S+   +    R A+E L+ P      ++  L SI  D R    
Sbjct: 513 TLLKSIKRPLSVWRKMLSLPATKTATHRNAFELLALPWQQDGITVALLDSILADGRLSHL 572

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLS 585
               L+ +RLQIES Y+     Q  +  +I+ EE   IP D DY     +LSNE + KL+
Sbjct: 573 VSDPLLCQRLQIESLYSNAIDDQEGDVVQIRAEEALAIPDDIDYLESSMSLSNEERNKLN 632

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             +P  +  AS+I G+TP+A+  +L Y+ +   
Sbjct: 633 EARPQTIGAASRISGVTPSAILTILQYLNRRKR 665


>gi|15611269|ref|NP_222920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori J99]
 gi|7674056|sp|Q9ZML9|MNMG_HELPJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|4154720|gb|AAD05783.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
          Length = 621

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/621 (43%), Positives = 364/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+G    LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGVRVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELEKDKQAIQENLKRLKEC 480

Query: 482 VLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT           +              L+   F+++ + S        +  V+E+++I
Sbjct: 481 VLTPSKEVLKRLNELGENPINDKMDGVSLLARDSFNLEKMRSFFSFLVPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|123967098|ref|YP_001012179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9515]
 gi|166222718|sp|A2BZ61|MNMG_PROM5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|123201464|gb|ABM73072.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9515]
          Length = 654

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/627 (42%), Positives = 363/627 (57%), Gaps = 16/627 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            +     ++              I  +     +     ++++T GTFL G I IG   + 
Sbjct: 128 MITELLIKEVETFTKNSKNTTKQIKGVKTFFGTCYSAKSIIITAGTFLEGRIWIGNKSMS 187

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G+  +  L  S       T RLKTGTPAR+D K+I +D  + Q +      FSF  
Sbjct: 188 AGRSGEQAAQGLTESLHSLGIKTERLKTGTPARVDKKSISFDALDIQPSTASDKYFSFDP 247

Query: 231 D-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
             K    QI C ITRT  +TH +I  N+  + IY G I S GPRYCPSIEDKIV+F ++N
Sbjct: 248 KIKNDMPQICCHITRTTQKTHELIRNNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADKN 307

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI   
Sbjct: 308 SHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLNKCKMLRPAYAVEYEYIPAT 367

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           +L  +LET +I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK N  D I FSR  SYIG
Sbjct: 368 QLKLSLETIEIDNLFSAGQINGTTGYEEAAAQGLVAGINATRKLNMKDPIIFSRESSYIG 427

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            MI+DL ++ + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I ERR     + ++
Sbjct: 428 TMINDLITRDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGFEIGLIDERRWFAHKEKMK 487

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDAR 526
                 S L++  L   +  + +I  +   K   + T  + L  P+    +        +
Sbjct: 488 LLKEENSRLENTRLKCTDEIARNIELESGSKIKGSTTLKDLLKRPNVHYSDFIKYDLANK 547

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                V+E ++I+  Y  Y  RQ     +I  +  + +P + +Y  +  LS E +E L+ 
Sbjct: 548 SLPIAVMEGVEIDIKYEGYLKRQQNNIDQINRQSLKSLPIEINYDLIDTLSLEARENLNK 607

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYI 613
           +KP N   ASKI G++ A L  LL+++
Sbjct: 608 IKPTNFGDASKIPGVSKADLTALLVWL 634


>gi|238926590|ref|ZP_04658350.1| glucose-inhibited division protein A [Selenomonas flueggei ATCC
           43531]
 gi|238885536|gb|EEQ49174.1| glucose-inhibited division protein A [Selenomonas flueggei ATCC
           43531]
          Length = 626

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 372/621 (59%), Gaps = 9/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IVIG GHAG EAA  AA++G  T ++T     I  M CNP++GG GK HLVREIDA
Sbjct: 6   NYDIIVIGAGHAGVEAALAAARMGQRTLIVTLSLDNIAMMPCNPSVGGPGKSHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + + ENLDV Q  V
Sbjct: 66  LGGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTENLDVRQLLV 125

Query: 125 AGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               TE+      ++ +V +    +    V+L TGT+LRG I +G+     G  G  P+ 
Sbjct: 126 TELITEERTGEKRVTGVVCETGERLTAHAVILATGTYLRGRIILGETIYDGGPNGQRPAM 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +   S         R KTGTPAR+D +T+   +T  Q  D     FSF+TD + + Q  C
Sbjct: 186 AFSESLRAAGLRLMRFKTGTPARVDRRTLDLAETALQAGDPDAPAFSFLTDAMPDAQTPC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH +I  N+  + + +G I+  GPRYCPSIE KI RF ++  HQ+FLEPEGL
Sbjct: 246 YLTYTNEATHAVIRANLHRAPMANGVIEGIGPRYCPSIETKIARFPDKERHQLFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T+ +Y  G+ST+LP ++Q +F+RTIPG+    ++RPGYAIEYD ++P +L  +L  K+I
Sbjct: 306 HTNEIYVQGMSTSLPTDVQEEFLRTIPGMHHARMMRPGYAIEYDCLDPLQLEASLAVKEI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR     + +   R+D YIGV+IDDL +KG 
Sbjct: 366 AGLYSAGQANGTSGYEEAAAQGLVAGINAARACMGEEPLILRRSDGYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RLTPIG ++G + + R  RF       +    LL+ 
Sbjct: 426 EEPYRMMTSRAEYRLVLRQDNADLRLTPIGRRIGLVSDARWARFTAKRGAIDAALRLLRE 485

Query: 481 LVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             L+                     T +  L+  +   + L ++  D    +  V E ++
Sbjct: 486 RRLSPSAETEALLAGAGISPLRTPMTLFALLAR-EGDYRVLAAVF-DLPPLADDVREEVE 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + Y  Y  +Q  +   ++  E R IP D DY+++ +L  E  EKLS ++P  + QAS+
Sbjct: 544 IMARYDGYIRKQEEQIARMERLEARRIPADTDYAAIGSLRLEAAEKLSAVRPRCIGQASR 603

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G++PA +++LL+Y+++   
Sbjct: 604 ISGVSPADISVLLVYLERARR 624


>gi|299142032|ref|ZP_07035166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris C735]
 gi|298576494|gb|EFI48366.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris C735]
          Length = 623

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 362/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAAA +A +GA T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MELKYDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   ENLD+ Q
Sbjct: 61  IDALGGNMGIVTDRTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDHTENLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      + N    +           ++V+T GTFL G++H+G+  I  GR  +   + 
Sbjct: 121 DQADELIVKNNEAVGVKTIWGVTFYAKSIVVTAGTFLNGLMHVGRKMIEGGRCAEPAVHH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++   + R+KTGTP R+D +T+ +D+ E+Q  D     FS+M +    RQ+ C 
Sbjct: 181 FTESITRWGITSARMKTGTPIRIDKRTVHFDEMEEQEGDTDFHQFSYMGEHRILRQLSCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T TN E H  + E +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +
Sbjct: 241 TTYTNKEVHETLREGLTDSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGED 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P +IQ   I  IP    V I RPGYAIEYDY +P +L  +LE+K + 
Sbjct: 301 TNEMYLNGFSSSMPMDIQLAAIHKIPAFRDVKIYRPGYAIEYDYFDPTQLKHSLESKILP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG+VAGIN+A      +     R  SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGIVAGINAALHCTGSEPFIMQRDQSYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT I   LG     R   + +  +  + L    K  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEIAYDLGIAKRNRYDWWHQKKEAVHRLIHFCKEY 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++S   S+            + ++ P  ++QNL  I P+ ++           +
Sbjct: 481 PIKASEINSQLESLGTTPLRAGCKLSDLIARPHLTLQNLSEIIPELKEALLMPENRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ I A ++   E   I   F YS L  +S E ++KL  + P  L
Sbjct: 541 AEAAEIQMKYQGYIERERIIADKMHRLENIKIKGRFKYSELQEISTEGRQKLEKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LLI + +
Sbjct: 601 AQASRIPGVSPSDINVLLILLGR 623


>gi|282880577|ref|ZP_06289284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305680|gb|EFA97733.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella timonensis CRIS 5C-B1]
          Length = 623

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/623 (41%), Positives = 367/623 (58%), Gaps = 15/623 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAGCEAA  AA+LGA T L+T   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 4   QYDVLVIGGGHAGCEAATAAAQLGAKTCLVTMDMNKIAQMSCNPAIGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + DA  IQFR+LN  KGPAV  PR Q DR  Y L  +  +    NLD+ Q E 
Sbjct: 64  LGGHMGMITDATSIQFRMLNKGKGPAVWSPRAQCDRSKYILEWRTVLDHTPNLDIWQDEA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               T  + ++ +       +   ++++T GTFL G++HIG+ K+P GR  +     L  
Sbjct: 124 CELLTANSEVTGVRTVWGVELYAKSIIITAGTFLNGLMHIGRKKLPGGRCAEPAVYHLSE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R+KTGTP R+D +++ ++  E Q  +     FS+M+     +Q+ C    
Sbjct: 184 SIAQHGITVQRMKTGTPVRIDARSVHFEDMEVQDGENDFHQFSYMSGSRNLKQLPCWTCY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  E+H ++ + +  S +++G I+S GPRYCPS+E K+V F +++ H +FLEPEG NT+ 
Sbjct: 244 TTPESHEVLRKGLPDSPLFNGQIQSTGPRYCPSVETKLVTFPDKDRHPLFLEPEGENTNE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P  IQ + +R IP   +  I R GYAIEYDY +P +L P+LE+K + GLF
Sbjct: 304 MYLNGFSSSMPLNIQIEALRQIPAFREAKIYRAGYAIEYDYFDPTQLKPSLESKIVKGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QG+VAGIN+A      D     R +SYIGV+IDDLT+KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAAGQGIVAGINAAIHCFGGDPFVMKRDESYIGVLIDDLTTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +  + L     +  + 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTEKAYQLGLAKRDRFDWWTQKKESISHLMDYCNNTSIK 483

Query: 485 SKNLSSTSISFKQDGKTRTAY-----EFLSYPDFSIQNLFSICPDA-------RKFSSLV 532
            K ++      +++G +         E ++ P  SIQ L  + P             S +
Sbjct: 484 PKEINEM---LERNGTSTLRMGCKISELIARPQISIQLLAEMIPSLSDEICKIPNRKSEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  +I+  Y  Y  R+ I A+++   E   I   FDY  L  LS E ++KL  + P  L
Sbjct: 541 IEATEIKIKYKGYIEREKIIAEKMHRLENIRIQDRFDYDQLHELSTEARQKLKRINPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            +AS+I G++P+ +N+LL+ + +
Sbjct: 601 AKASRIPGVSPSDINVLLVLLGR 623


>gi|255074421|ref|XP_002500885.1| predicted protein [Micromonas sp. RCC299]
 gi|226516148|gb|ACO62143.1| predicted protein [Micromonas sp. RCC299]
          Length = 761

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/627 (40%), Positives = 359/627 (57%), Gaps = 10/627 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+G GHAGCEAA  A++ GA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 99  EHDFDVIVVGAGHAGCEAALAASRRGARTLLLTLSLDRIAWQPCNPAVGGPAKSQLVHEV 158

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  +  Q NL + +G
Sbjct: 159 DALGGEIGKMADKCYLQKRVLNASRGPAVWALRAQTDKWEYSREMRLRLERQPNLMIREG 218

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                     + ++ +        R   VVLTTGTF+ G I +G+  + AGR G++PS  
Sbjct: 219 MATDVLVGSNDEVAGVRTFFGMEFRAPAVVLTTGTFMSGQIWVGRKTLAAGRAGEAPSEG 278

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  S     F+T RLKTGTPAR+D ++I +   E Q  DE    FSF     +   Q+ C
Sbjct: 279 LTESLCDLGFETDRLKTGTPARVDSRSIDYSLLEAQPGDEDERWFSFDPRAHVAREQMAC 338

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TRT   TH++I +N+  +  Y G + + GPRYCPSIEDKIVRF ++  HQIFLEPEG 
Sbjct: 339 HLTRTTAATHQLIRDNLHETPTYGGWVGAKGPRYCPSIEDKIVRFADKESHQIFLEPEGR 398

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VY  G ST LPE +Q   +RT+PGLEKVN++RP YA+EYD++   +   TLETKKI
Sbjct: 399 SCPEVYVQGFSTGLPERLQLALLRTLPGLEKVNMLRPAYAVEYDFLPAYQCDNTLETKKI 458

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF +GQINGTTGYEEAAAQGL+AG N+A  +     +   R  SY+G +IDDL +K +
Sbjct: 459 RGLFFSGQINGTTGYEEAAAQGLLAGANAAAVALDGAKLVLPREGSYLGTLIDDLCTKDL 518

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR+EYR+ LR DNAD RLTPIG + G I + R   F   +         LK+
Sbjct: 519 REPYRMLTSRSEYRLVLRSDNADQRLTPIGRECGLIDDERWGMFTDKMHAVEDELERLKN 578

Query: 481 LVLTSKNLSSTSI-------SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + S +    +I       + K   ++ T  E L  P+     +          +    
Sbjct: 579 TRVKSDSEVVQAILNAGAGGAKKPSRQSFTLEELLRRPEVDTA-MLDGFGLGGGLTRWDA 637

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++++  Y  +  RQ  +  ++  +  + IP+  DY ++  L  E +EKL+ + P  + 
Sbjct: 638 EAVEVKVKYEGFIKRQEGQVAKVAGKMNKKIPEGIDYGAITTLRMEAREKLAKMTPRTVG 697

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKL 620
           QAS+I G+TPA ++ LL++++    + 
Sbjct: 698 QASRIGGVTPADISSLLVHLEVGNRQK 724


>gi|83594954|ref|YP_428706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodospirillum rubrum ATCC 11170]
 gi|123525453|sp|Q2RN76|MNMG_RHORT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83577868|gb|ABC24419.1| Glucose-inhibited division protein A subfamily [Rhodospirillum
           rubrum ATCC 11170]
          Length = 629

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/621 (51%), Positives = 408/621 (65%), Gaps = 4/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIV+GGGHAG EAAA AA+LGA T L THK  T+G+MSCNPAIGGL KGHLVRE
Sbjct: 1   MTNHWDVIVVGGGHAGTEAAAAAARLGAKTLLATHKLETVGTMSCNPAIGGLAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+MGR  D  GIQFR+LN  KGPAVRGPR QADR LY  A++  +  Q  L +  
Sbjct: 61  IDALDGVMGRAIDRGGIQFRILNRSKGPAVRGPRAQADRALYAQAVRAILADQPGLTLAA 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             +       +   + ++  +  + R   VVLTTGTFLRGVIHIG    PAGR+G++P+ 
Sbjct: 121 LAIEDLLIGNDGRCAGVIDAEGGVHRAGAVVLTTGTFLRGVIHIGTQTTPAGRIGEAPAL 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +  F  GRLKTGTP RLDG+TI W   E Q  DE   PFSF+T  IT  QI C
Sbjct: 181 GLSATLARLGFPLGRLKTGTPPRLDGRTIAWATLESQPGDEPPPPFSFLTTAITTPQISC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T  ETHR+I EN+  + +YSG I+  GPRYCPSIEDK+VRF +R+ HQIFLEPEGL
Sbjct: 241 AITETTAETHRVIRENLHRAPLYSGQIQGVGPRYCPSIEDKVVRFADRDRHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   VYPNGIST+LP ++Q   + TIPGLEK  ++RPGYAIEYD+++P+ L PTLET ++
Sbjct: 301 DDPTVYPNGISTSLPIDVQLALLATIPGLEKAEMMRPGYAIEYDFVDPRCLGPTLETDRL 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSAR---KSNKLDCICFSRTDSYIGVMIDDLTS 417
            GLFLAGQINGTTGYEEAAAQGL+AG+N+AR      +   I F R + Y+GV++DDL +
Sbjct: 361 PGLFLAGQINGTTGYEEAAAQGLIAGLNAARVAGAGERAAPITFDRAEGYLGVLVDDLIT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR+ LR DNAD RLT  G+ LGC+G  R   F          R++
Sbjct: 421 LGTTEPYRMFTSRAEYRLLLRADNADLRLTAKGIALGCVGAARTAAFEDKRAALTAARTM 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +  L LT  +L+   I+  QDG+ RT  + L + D     L ++ P+       V E+L+
Sbjct: 481 IDGLALTPPDLARRGIAVNQDGQRRTPLDLLCHADIDWARLVALWPELGAIRPDVAEQLE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I + YA Y  R   +    + +E  ++P D  Y  L  LS EL+ KL++ +P  L  A++
Sbjct: 541 IGARYAGYLERMHGDVAAFRRDEALVLPADLAYDGLANLSAELRGKLTLARPATLGAAAR 600

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I GMTPAAL  LL ++K+   
Sbjct: 601 IPGMTPAALTALLRHVKRRER 621


>gi|217032828|ref|ZP_03438308.1| hypothetical protein HPB128_176g6 [Helicobacter pylori B128]
 gi|298736843|ref|YP_003729373.1| glucose inhibited division protein A [Helicobacter pylori B8]
 gi|216945453|gb|EEC24115.1| hypothetical protein HPB128_176g6 [Helicobacter pylori B128]
 gi|298356037|emb|CBI66909.1| glucose inhibited division protein A [Helicobacter pylori B8]
          Length = 621

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 371/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDQQAIQENLKRLKEY 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKEVLKRLSELDENPINDKVDGVS-----LLARDSFNAEKMRSFFSFLTPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPKDF +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKDFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|33862231|ref|NP_893792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|81170571|sp|Q7TU19|MNMG_PROMP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|33634449|emb|CAE20134.1| Glucose inhibited division protein A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 654

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/636 (42%), Positives = 365/636 (57%), Gaps = 16/636 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV EI
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGQLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            +     ++              I  +     +     ++++T GTFL G I IG   + 
Sbjct: 128 MITELVIKEAETFSNNLKNKTKKIKGVKTFFGTYYYAKSIIITAGTFLEGRIWIGNKSMS 187

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G+  +  L  S       T RLKTGTPAR+D K+I +D+ + Q +      FSF  
Sbjct: 188 AGRSGEQAAQGLTQSLHNLGIKTERLKTGTPARVDKKSISFDELDIQPSTASDKYFSFDP 247

Query: 231 D-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
             K    Q+ C ITRT L+TH +I  N+  + IY G I S GPRYCPSIEDKIV+F ++N
Sbjct: 248 KIKNNMPQVSCHITRTTLKTHELIRNNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADKN 307

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            HQIFLEPEG+NT  +Y  G ST LPE IQ   +RT+PGL K  ++RP YA+EY+YI   
Sbjct: 308 SHQIFLEPEGINTPEIYVQGFSTGLPENIQLDLLRTLPGLNKCKMLRPAYAVEYEYIPAT 367

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           +L  +LET +I  LF AGQINGTTGYEEAAAQGLVAGIN+ RK N  D I FSR  SYIG
Sbjct: 368 QLKSSLETIEIENLFSAGQINGTTGYEEAAAQGLVAGINATRKLNMKDPIIFSRESSYIG 427

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            MI+DL ++ + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I ERR     K ++
Sbjct: 428 TMINDLITRDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGFEIGLIDERRWLAHKKKMK 487

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDAR 526
                 S L++  L   +  +  I      K   + T  E L  P+    +        +
Sbjct: 488 SLKEENSRLENTRLKCTDEIAKKIELDSGSKIKGSTTLKELLKRPNLHYSDFIRYDLVDK 547

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                VIE ++I+  Y  Y  RQ     +I  +  + +  + +Y  +  LS E +E L+ 
Sbjct: 548 TLPISVIEGVEIDIKYEGYLKRQKNNIDQINRQSLKSLSSEINYDQIDTLSLEARENLNK 607

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           +KP N   ASKI G++ A L  LL+++K   +K  +
Sbjct: 608 IKPTNFGDASKIPGVSKADLTALLVWLKIKELKNEK 643


>gi|194335189|ref|YP_002016983.1| glucose inhibited division protein A [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307666|gb|ACF42366.1| glucose inhibited division protein A [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 621

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/620 (42%), Positives = 365/620 (58%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA++G+S  LI+   + I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVTGAGHAGCEAALSAARMGSSCLLISSDLTAIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KGPA+  PR QADR LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRMLNRSKGPAMHSPRAQADRTLYSLYMRNVIEKEANIDLLQDTVV 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G        S + +    +I   T +L+ GTFL G+IHIG      GR + + P   L  
Sbjct: 122 GIECSGGAFSGVRLMSGRIINGRTAILSCGTFLNGLIHIGMNHYAGGRTIAEPPVYGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
             +K+ F  GRLKTGTPAR+D +++ +D  E+Q  D   I FSF    + NR  I C +T
Sbjct: 182 DLVKYGFAAGRLKTGTPARIDARSVEYDLVEEQSGDPLPISFSFRNTPVINRHQISCFVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T   TH I+ +    S ++SG ++  GPRYCPSIEDKI RF +++ H IFLEPEG +T+
Sbjct: 242 KTTKATHEILKKGFDRSPLFSGKVQGIGPRYCPSIEDKICRFPDKDSHHIFLEPEGFDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPEEIQ + ++++PGL  V +IRPGYAIEYDY  P ++  +LETK +  L
Sbjct: 302 EMYVNGFSTSLPEEIQLEALQSLPGLRNVKMIRPGYAIEYDYFFPYQINRSLETKLVKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+         +   R+D+YIGV+IDDL +K   EP
Sbjct: 362 FFAGQINGTSGYEEAAAQGLIAGINATLLLRGRAPLHLKRSDAYIGVLIDDLVTKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL       G I            +  + L  L     +
Sbjct: 422 YRMFTSSAEHRLLLRHDNADIRLCHHAKSAGLIDADTFSDCTNKKRLIDTLNQLCLDTKI 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
                ++    +       T++A   L  P      L       ++         LV E+
Sbjct: 482 KPDVANTLLAGLGHPPVTTTQSAVNLLKKPGVHFHMLLESALSFKESVYAVTDDPLVFEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I+  Y  Y  R ++ A++I   +   IP  F Y  +  LSNE +EKL  L+P  + QA
Sbjct: 542 VEIDLKYEGYLKRDLLMAEKILRLDLHEIPASFRYDHVTGLSNEGREKLMKLRPETIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+I + +
Sbjct: 602 SRILGVSPSDISVLMIRLGR 621


>gi|193211683|ref|YP_001997636.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobaculum parvum NCIB 8327]
 gi|193085160|gb|ACF10436.1| glucose inhibited division protein A [Chlorobaculum parvum NCIB
           8327]
          Length = 621

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/620 (42%), Positives = 368/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA   A+ G    LIT   S +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVVGAGHAGCEAALAVARSGLECLLITSDLSAVARMSCNPAIGGVAKGQMTREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN  KG A+  PR QAD+ LY L M+  I  + N+D++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRLLNRSKGAALHSPRAQADKTLYSLYMRSVIEHEPNIDILQDTVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G +  K    S+ +     I+    +L  GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GVSAPKGTFKSVTVMSGRAIKAKAAILACGTFLNGLIHIGMDHYPGGRSVAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGIT 243
           S     F  GRLKTGTP R+D +++ +D   +Q  D+  + FSF T+ + +R  + C +T
Sbjct: 182 SLAALGFSFGRLKTGTPPRIDSRSVNYDLVTEQPGDDDPVAFSFSTESVAHRNLVCCHLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S +++G ++  GPRYCPSIEDKI RF E+    IFLEPEG +T 
Sbjct: 242 KTTEKTHEILRSGFDRSPLFTGKVQGVGPRYCPSIEDKIYRFPEKLSQHIFLEPEGADTI 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R+IPGLE+  +IRPGYAIEYDY +P ++  T+ET+ +  L
Sbjct: 302 EMYVNGFSTSLPEDIQLAGLRSIPGLEEAKMIRPGYAIEYDYFHPWQIRSTMETRPVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAA QGL+AGIN+ RK    + I   R  +YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAGQGLMAGINAVRKILGKEPIVLGRDQAYIGVLIDDLITKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL+ +G + G + E + ++              LKSL L
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLSTVGYECGLVSEHQLEKTKAITDLAGECIERLKSLKL 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
               ++    +   ++     +A   L  P   + +L       +           V E+
Sbjct: 482 KPDEINQLLANKGAQELKSPASALSVLKRPGIELADLLRHSAAVQAAIGETCEDVRVAEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           +QIE  Y  Y  R+ + A+ I   +   IP +F Y SL +LSNE +EKL   +P  + QA
Sbjct: 542 VQIEIKYEGYIKREKLVAERIARLDALHIPDNFKYESLNSLSNEGREKLIKHRPSTIGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+I + +
Sbjct: 602 SRILGVSPSDVSILMIRLGR 621


>gi|87311176|ref|ZP_01093299.1| glucose inhibited division protein A (GIDA) [Blastopirellula marina
           DSM 3645]
 gi|87286084|gb|EAQ77995.1| glucose inhibited division protein A (GIDA) [Blastopirellula marina
           DSM 3645]
          Length = 610

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/614 (46%), Positives = 381/614 (62%), Gaps = 20/614 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV++IG GHAG EAA  AA+LGA TAL+T    T+  MSCNPAIGG+ KG +VRE+DA
Sbjct: 7   HYDVLIIGAGHAGTEAALAAARLGAKTALLTTNLDTVAQMSCNPAIGGVAKGQIVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MGR  D  GIQFR+LN +KGPA+ GPR QAD++ Y+  ++  +  Q NL + Q  V
Sbjct: 67  LGGVMGRAIDETGIQFRLLNRRKGPAMHGPRAQADKKAYQNLVKLMVEDQPNLSLRQEIV 126

Query: 125 AGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           A   TEK      ++ +++    + R   VVLTTGTFL  ++H G+ K P GR G+  S+
Sbjct: 127 ADLLTEKVDGRQQVTGVLVHGGVIYRAPRVVLTTGTFLSAIMHTGEAKTPGGRGGEGTSS 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +  +  +  F   R KTGTPARL+  TI +   E+Q  D++  PFS++TD +T  Q+ C
Sbjct: 187 GISQALKRLQFRVERFKTGTPARLNANTIDYAAVEEQPGDDQPQPFSYLTDGLTLEQVPC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN   H +I  N+  + +YSG I+  GPRYCPSIEDK+VRF ++  HQ+FLEPEG 
Sbjct: 247 HITHTNEAVHELIRANLHRAPMYSGQIQGSGPRYCPSIEDKVVRFSDKTQHQLFLEPEGR 306

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  VY NGIST+LP ++Q   ++ IPGLEK  I+R GYA+EYDY +P +L PTLETK +
Sbjct: 307 RTREVYVNGISTSLPRDVQDGMLKLIPGLEKAEIMRYGYAVEYDYCSPDQLRPTLETKDV 366

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAAAQGL+AG N+A  +     +  SR  +YIGV+IDDL + GV
Sbjct: 367 DGLYFAGQINGTTGYEEAAAQGLIAGANAALAAANKPPLILSRDQAYIGVLIDDLVTCGV 426

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLTPI    G I   R  R  +        R LL +
Sbjct: 427 DEPYRMFTSRAEFRLMLRQDNADRRLTPIAHACGMIDSDRWNRLEQKETAITAARKLLTT 486

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +   +L                  +L  P+ + + + +  P   +FS+ V E++  + 
Sbjct: 487 GRIEGASLEK----------------YLKRPEATWEMMVAADPQLAQFSAAVAEQVTYDI 530

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E    K    + IP  FDY+ L  +  E +EKL+  +P  L QA +I G
Sbjct: 531 KYAGYVVRQQTEVARQKRLADKRIPDSFDYTGLSQMRAEAREKLAKHRPGTLAQAERISG 590

Query: 601 MTPAALNLLLIYIK 614
           +TPA + LLL+Y++
Sbjct: 591 ITPADIALLLVYLE 604


>gi|326334829|ref|ZP_08201031.1| glucose inhibited division protein A [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693008|gb|EGD34945.1| glucose inhibited division protein A [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 619

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/594 (41%), Positives = 353/594 (59%), Gaps = 8/594 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LI+ +   +  MSCNPA+GG+ KG +VREIDAL G MG + D   IQF++LN  KGP
Sbjct: 26  KTLLISMQLQNMAQMSCNPAVGGIAKGQIVREIDALGGYMGIITDQTAIQFKMLNKSKGP 85

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           A+  PR Q+DR  +  A + ++    NLD  Q  V     E N +  +     S+I   +
Sbjct: 86  AMWSPRAQSDRMRFSEAWRLQLEKLPNLDFFQEMVCEVLIEHNKVIGVKTSLGSIIHSKS 145

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLT GTFL GVIH+G   +  GR+G+  +  +  S +   F+ GR+KTGTP R+DG+++
Sbjct: 146 VVLTNGTFLNGVIHVGLKHLSGGRVGEKAAKGITESLVAHGFEAGRMKTGTPPRVDGRSL 205

Query: 210 IWDKTEKQFADERLIPFSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
            + K   Q  DE    FSF+   K    Q++C +T T+ + H I+      S +++G I 
Sbjct: 206 DYSKMTPQPGDENPEKFSFLPITKPLIHQLDCYMTYTSEQVHDILRTGFDRSPMFTGLIH 265

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
             GPRYCPSIEDKI RF +++ HQ+F+EPEG +T  +Y NG ST+LPEEIQ++ +R + G
Sbjct: 266 GVGPRYCPSIEDKINRFADKDHHQLFIEPEGWHTVEMYVNGFSTSLPEEIQYEALRKVAG 325

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
            E V   RPGYAIEYDY  P +L  TLETK +  LF AGQINGTTGYEEA AQGL+AGIN
Sbjct: 326 FENVKFFRPGYAIEYDYFPPTQLKHTLETKLVENLFFAGQINGTTGYEEAGAQGLMAGIN 385

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++RK  +       R ++YIGV+IDDL +KG  EPYRMFTSRAEYR  LR DNAD RLTP
Sbjct: 386 ASRKVQEQSPFVLKRNEAYIGVLIDDLITKGTEEPYRMFTSRAEYRTLLRQDNADARLTP 445

Query: 449 IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG--KTRTAYE 506
           +G  LG   E R +   +   +        K   +T +  +     +      +     +
Sbjct: 446 MGYALGLASEERMRLLEEKQAKTQAFVQFFKDTSITPEQANPILEKYDSSSMKQGDKMAK 505

Query: 507 FLSYPDFSIQNLFSI-----CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            L+ P+ ++ +L  I         ++     +E  +IE  YA Y  ++   A ++   E 
Sbjct: 506 VLARPNITVASLMEIPSVKEFVQRKQLGKEELESTEIEIKYAGYIEKEKNNADKLNRLED 565

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             IP++F+Y  L +LS E +EKL  ++P +L QAS+I G++PA +++LLIY+ +
Sbjct: 566 IRIPENFNYDKLTSLSFESREKLKKIRPTSLSQASRISGVSPADISILLIYMGR 619


>gi|282858649|ref|ZP_06267807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bivia JCVIHMP010]
 gi|282588567|gb|EFB93714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bivia JCVIHMP010]
          Length = 631

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/631 (40%), Positives = 369/631 (58%), Gaps = 17/631 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA +GA T L+T   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MVFKYDVLVIGGGHAGCEAATAAANIGAKTCLLTMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA+ IQFR+LN  KGPAV  PR Q DR+L+    +  +   ++LD+ Q
Sbjct: 61  IDALGGHMGLVTDASAIQFRMLNRSKGPAVWSPRAQCDRQLFINFWRETLDKTDHLDIFQ 120

Query: 122 GEVAGFNTEK--------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +      EK          +  +       +   TV++T GTFL G++HIGK ++  GR
Sbjct: 121 DQAEELLVEKNDASAETEQRVIGVRTIWGIDVYARTVIITAGTFLNGLMHIGKKQVAGGR 180

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +   ++   S  +      R+KTGTP R+D +++ ++ TE+Q  +     FSF   + 
Sbjct: 181 ISEPAVHNFSESITRLGITVARMKTGTPVRIDKRSVHFEDTEEQPGECDYHQFSFFGAQR 240

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +  Q+ C    TN E H  +  ++  S +++G I+S GPRYCPSIE K+V F ++  H +
Sbjct: 241 SLPQLPCWTFNTNEEVHETLRNSLSESPLFNGQIQSTGPRYCPSIETKLVTFPDKQSHPL 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG+NT+ +Y NG S+++P ++Q + I  IP L    I RPGYAIEYDY +P +L P
Sbjct: 301 FLEPEGVNTNEMYLNGFSSSMPWDVQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKP 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LE+K + GLF AGQ+NGTTGYEEA  QG+VAGIN+AR          +R +SYIGV+ID
Sbjct: 361 SLESKIVEGLFFAGQVNGTTGYEEAGGQGMVAGINAARLCTDNQPFIMNRDESYIGVLID 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLT+KGV EPYRMFTSRAEYRI LR D+AD RLT     LG     R   + +  +  N 
Sbjct: 421 DLTTKGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYALGVAKRDRYDWWLQKKENINR 480

Query: 474 LRSLLKSLVLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--- 528
           + +   +  +  + ++     I       T    + +  P+ SI NL  + P  ++    
Sbjct: 481 IETFFNNTSVKPEQVNGLLEKIGSSTIKGTTKLIDLIGRPNVSINNLSEVLPQLKETIEA 540

Query: 529 ----SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
                  + E  +I+  Y  Y  R+ I A+++   E   I   F+YS +  LS E ++KL
Sbjct: 541 SPNRKEEIAEATEIKMKYKGYIERERIFAEKMHRLENMKIKGHFNYSEIHDLSTECRQKL 600

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             ++P  L QAS+I G++P  +N+LL+ + +
Sbjct: 601 ERIQPETLAQASRIPGVSPNDINVLLVLMGR 631


>gi|261824838|pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
           Mnmg
 gi|261824839|pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
           Mnmg
          Length = 576

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/544 (48%), Positives = 351/544 (64%), Gaps = 5/544 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 33  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 92

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 93  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 152

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 153 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 212

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITR 244
             +     GRLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q + C IT 
Sbjct: 213 LRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYITH 272

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEPEGL ++ 
Sbjct: 273 TNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNE 332

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF
Sbjct: 333 IYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLF 392

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEAAAQGL+AG+N+AR S+  +    +R+ +Y+GV++DDL + G  EPY
Sbjct: 393 FAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEPY 452

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNAD RLT IG +LG + + R  RF + ++     R  LKS  +T
Sbjct: 453 RMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWVT 512

Query: 485 SKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES 540
               ++  ++        +  +  + L  P+ + + L ++ P A         E+++I+ 
Sbjct: 513 PSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQV 572

Query: 541 SYAA 544
            Y  
Sbjct: 573 KYEG 576


>gi|126697203|ref|YP_001092089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9301]
 gi|205375706|sp|A3PFG3|MNMG_PROM0 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|126544246|gb|ABO18488.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9301]
          Length = 660

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/637 (42%), Positives = 374/637 (58%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+DVIVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDVIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKKMIEILQNTDNLSLKEA 127

Query: 123 EVAGFNTEK-------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +  K               I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEEIGLNSKRTVKKRIKGVRTFFGSYYSARSVIITAGTFLEGRIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D ++II+D  + Q +      FSF 
Sbjct: 188 SAGRSGEQAAKGLTENLHEIGIKTERLKTGTPARVDKRSIIFDDLDIQPSTAADKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTTKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL +  ++RP YA+EYDYI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLNECKMLRPAYAVEYDYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK +K D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLSKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLT +G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTQLGYQIGLINEKRWSAYQEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L    L +    S  I  +   K   + T  E L  PDF   +L       
Sbjct: 488 KLLEEEKFRLNKTRLKNTEEISKKIELETGSKIKGSITLKELLKRPDFHYSDLIKYNLTE 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +   S + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGSSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIETLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +K  +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREIKKEK 644


>gi|307636905|gb|ADN79355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 908]
 gi|325995494|gb|ADZ50899.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 2018]
 gi|325997091|gb|ADZ49299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Helicobacter pylori 2017]
          Length = 621

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/621 (43%), Positives = 365/621 (58%), Gaps = 5/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQTPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   +   K  Q        LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYEELKKDQQAIQENLKRLKEC 480

Query: 482 VLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           VLT        +S                L+   F+ + + S        +  V+E+++I
Sbjct: 481 VLTPSKEVLKRLSELDENPINDKMDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L +AS+I
Sbjct: 541 ECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI 600

Query: 599 EGMTPA--ALNLLLIYIKKNT 617
            G+TPA   +  L I+++KN+
Sbjct: 601 SGITPANLDVLHLYIHLRKNS 621


>gi|219847173|ref|YP_002461606.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chloroflexus aggregans DSM 9485]
 gi|219541432|gb|ACL23170.1| glucose inhibited division protein A [Chloroflexus aggregans DSM
           9485]
          Length = 656

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/646 (40%), Positives = 358/646 (55%), Gaps = 29/646 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA  AA+LG  T L+T     +  MSCNP+IGG  KGHLVRE
Sbjct: 1   MQTRYDVIVVGAGHAGCEAAHAAARLGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ GLMGR+ D + IQ R+LN  KGPAV+  R Q D+ LY   M+  +    NLD+ Q
Sbjct: 61  IDAMGGLMGRITDRSAIQIRLLNESKGPAVQSLRAQCDKRLYARLMKETLERVPNLDLRQ 120

Query: 122 GEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             V             ++            V+LTTGTFLRG    G+    AGR G++P+
Sbjct: 121 AMVERIAPPNADTQCFTVTTHTGWRYLAPAVILTTGTFLRGRAITGEAVWGAGRAGEAPA 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------ 233
            +L        F   RLKTGTP RL   TI +  TE Q   ++ + F     ++      
Sbjct: 181 MALSEDLAALGFPLVRLKTGTPPRLAAATIDFSLTELQPGSDKPLAFGHYYAELGETIPP 240

Query: 234 ------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C    T  E H II +N+  + ++SG I+  GPRYC
Sbjct: 241 PEYHGPPAPVYPHPQLNGWRPQLPCYQVHTTPEFHAIIRQNLHRAPLFSGIIEGVGPRYC 300

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIVRF ++  H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L  V ++
Sbjct: 301 PSIEDKIVRFADKERHSLFLEPEGWTTAEVYVQGCNTSLPEDVQWAMLRSIPALRNVELM 360

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R GYAIEYD +   E+   ++T+++ GLF AGQINGTTGYEEAAAQGL+AGIN+A     
Sbjct: 361 RIGYAIEYDAVATGEITADMQTRRLRGLFFAGQINGTTGYEEAAAQGLMAGINAAHYVQG 420

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
              +   R ++YIGV+IDDLT+K + EPYRMFTSRAEYR+ LR DNAD RLTP+  +LG 
Sbjct: 421 KPPVILGRAEAYIGVLIDDLTTKEIREPYRMFTSRAEYRLLLRGDNADLRLTPLAYRLGL 480

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPD 512
           +   R     +  ++       +    +      + ++     K   +  T  E L+ PD
Sbjct: 481 VDGDRAAVVEQRRRQAEQALQQMHERCIFPSAAINNALEAQGVKPLNQPATVAEVLARPD 540

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
            S + L +  PD    S  V E+++I   Y  Y  RQ  E   ++  E R IP DFDY++
Sbjct: 541 VSYRQLRTAIPDLPDLSPSVAEQVEIGCKYRGYIARQEREVARMQKMEHRRIPPDFDYTT 600

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           LP L NE ++ L   +P  L QA ++ G+ PA + ++L  +++  V
Sbjct: 601 LPGLRNEARQVLMRFRPATLGQAGRLAGINPADVAIILFALERRQV 646


>gi|317013657|gb|ADU81093.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori Gambia94/24]
          Length = 621

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 371/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + I  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEIVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQENLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K DG +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKEVLKRLNELDENPINDKMDGVS-----LLARDSFNAEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKHFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|225620554|ref|YP_002721811.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Brachyspira hyodysenteriae WA1]
 gi|225215373|gb|ACN84107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Brachyspira hyodysenteriae WA1]
          Length = 617

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/614 (45%), Positives = 382/614 (62%), Gaps = 3/614 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAA  +A+LG  T +I+    TIG MSCNP+IGG+ KG +V+
Sbjct: 1   MNNNKYDVIVVGAGHAGIEAALSSARLGMKTLIISINLDTIGQMSCNPSIGGVAKGTIVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +Q NL + 
Sbjct: 61  EIDALGGEMGILIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEAAKTLYAQNNLTLH 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E N++  I  +      C  V+LTTGTFL G+IHIGK +  AGR+G+ P+ 
Sbjct: 121 QDIVTEIIVENNVLKGIKTERGREYECQAVILTTGTFLNGLIHIGKYQKQAGRIGELPAI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +S      + GRLKTGTPAR+D  +I +D  E Q  D+ + PFSF+ +KI   Q  C
Sbjct: 181 GLSDSLRSLGLEVGRLKTGTPARVDYYSINFDILEMQKGDDEITPFSFLDEKIDIVQEPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT T+   H+II +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E  
Sbjct: 241 YITYTDANIHKIIQDNIHLSPMYSGVITGIGPRYCPSIEDKVVRFADKPRHQLHLERESY 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T+ VY NG S++LPEE+Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI
Sbjct: 301 RTNEVYINGFSSSLPEEVQIKMIRSLKGLEEVRILKPAYAVEYDYVNPIELKPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAA QGL+AGIN++ K  K       R+D YIGV+IDDLT+KG 
Sbjct: 361 EGLFLAGQINGTSGYEEAACQGLMAGINASLKIKKEAPFILKRSDGYIGVLIDDLTTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R ++     Q+   L   L  
Sbjct: 421 KEPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLEKVRDKKQKTQILVEYLNK 480

Query: 481 LVLTSKNLSSTSISFKQDG-KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
             LT K       + +    +T +    +  P+  I  L  +      ++  V+E  +I 
Sbjct: 481 RTLTQKETEDLGFTKEAKEYRTMSLASIIKRPECGIDMLKHLI--DGDYNKNVLENAEIA 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  R + E ++I+  E  LIP+DFDYS+L ++  +   KL   KP+N+ QA +I 
Sbjct: 539 IKYEGYIARYLNEIRDIEKYENMLIPEDFDYSTLKSVKIDAINKLKQYKPYNISQALRIP 598

Query: 600 GMTPAALNLLLIYI 613
            +  + +++L++ +
Sbjct: 599 EVDKSVVHILILAL 612


>gi|304413041|ref|ZP_07394514.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Regiella insecticola LSR1]
 gi|304283884|gb|EFL92277.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Candidatus Regiella insecticola LSR1]
          Length = 597

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/616 (42%), Positives = 355/616 (57%), Gaps = 46/616 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVI+IGGGHAG EAA  +A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+EID
Sbjct: 5   EQFDVIIIGGGHAGTEAAMASARMGCQTLLLTHNIETLGEMSCNPAIGGIGKGHLVKEID 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG+                                                    
Sbjct: 65  ALGGLMGKAIXXXXXXXXXX---------------------------------------- 84

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N ++  V +     R  TV+LT GTFL G IHIG      GR GD  S +L 
Sbjct: 85  -EDLIIENNSVAGAVTKTGQRFRAKTVILTVGTFLDGKIHIGLENHSGGRAGDPASITLS 143

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGI 242
           +   +      RLKTGTP R+D KTI + +   Q  D  +  FSF+        QI C I
Sbjct: 144 HRLKELPLRVNRLKTGTPPRIDAKTIDFSQLTVQLGDTPIPNFSFLDHLTQRPKQIACHI 203

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II  N+  S +Y+G+I+  GPRYCPSIEDK+VRF +R+ HQIFLEPEGLN+
Sbjct: 204 THTNKKTHEIIRNNLDRSPMYTGEIEGIGPRYCPSIEDKVVRFADRDTHQIFLEPEGLNS 263

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + +YPNGIST+LP + Q   I +I G+E   IIRPGYAIEYDY +P++L  TLE+K + G
Sbjct: 264 NEIYPNGISTSLPLDTQINLIHSIKGMENARIIRPGYAIEYDYFDPRDLKNTLESKHLHG 323

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQGL+AG+N+AR +   +     R ++Y+GV++DDL++ G  E
Sbjct: 324 LFFAGQINGTTGYEEAAAQGLLAGLNAARLAKGKESWSPRRDEAYLGVLVDDLSTLGTKE 383

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYR+ LR DNAD RLT IG  LG + + R K + + +++    R  L++  
Sbjct: 384 PYRMFTSRAEYRLMLREDNADLRLTKIGRGLGLVDDDRWKHYCEKVEKIEKERQRLRNTW 443

Query: 483 LTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQI 538
           ++  +   T ++        K     E L  P+ +  NL ++              +++I
Sbjct: 444 VSPHSPHITQLNKLLKTPLSKEANGEELLRRPEINYHNLTALNLFGPALQDYQAAAQVEI 503

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           ++ Y  Y  RQ  E  +    E   +  + +Y  +P LSNE+  KL+  KP ++ QAS+I
Sbjct: 504 QTKYQGYIERQQEEITKQLRNENTKLSINTNYHEIPGLSNEVIAKLNDHKPHSIGQASRI 563

Query: 599 EGMTPAALNLLLIYIK 614
            G+TPAA+++LLI++K
Sbjct: 564 SGITPAAISILLIWLK 579


>gi|149278193|ref|ZP_01884331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter sp. BAL39]
 gi|149230959|gb|EDM36340.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pedobacter sp. BAL39]
          Length = 620

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/620 (43%), Positives = 375/620 (60%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G GHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MFKEYDVIVVGAGHAGCEAAAAAANLGSSVLLITMNMETIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G  G ++D   +QFR+LN+ KGPA+  PR Q DR+ +    +  +    N+D  Q
Sbjct: 61  IDAMGGYSGIISDKTTLQFRMLNLSKGPAMWSPRAQNDRKRFAEEWRLALERTPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V+    + N ++ +       I   +VVLT GTFL G+IHIG+ K   GR  +  +  
Sbjct: 121 DMVSSLVIKNNTVTGVKTSLGIEISGKSVVLTNGTFLNGLIHIGEKKFGGGRTAERAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +        F+ GR+KTGTP R+DG+++ +   E+Q+ DE    FS+        Q  C 
Sbjct: 181 ITEQLTTLGFEAGRMKTGTPPRVDGRSLNYSLMEEQWGDENPGRFSYTNVARPTEQRCCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG N
Sbjct: 241 ITYTNADVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGWN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q++ +  IPG E   + RPGYAIEYDY  P +L  TLETK I+
Sbjct: 301 TCEIYVNGFSTSLPEDVQYRALTQIPGFENAKMFRPGYAIEYDYFPPTQLGLTLETKLIN 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA+QG +AGIN+ +K N L  +   R++SYIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAASQGFIAGINAHQKVNDLHELIMKRSESYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS- 480
           EPYRMFTSRAE+R+ LR DNAD RL+PIG +LG I + R     + I   + + +  K  
Sbjct: 421 EPYRMFTSRAEHRLLLRQDNADIRLSPIGHQLGLISDERLDLVKQKISNSDAIVTFSKKQ 480

Query: 481 -LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF----SICPDARKFSSLVIER 535
            + ++  N     +      +       L  P  +I +L            +F    IE+
Sbjct: 481 GIDMSEANDKLAELGTTALNQNVKIVSLLGRPQVNINDLRTMSKPFDHYLEQFDQETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y +Y  ++     +++  E + I  DFDYS L +LS E +EKL  +KP  L QA
Sbjct: 541 AEIKIKYESYFEKEQEIVNKMQKMEDKDINPDFDYSQLVSLSKEAREKLLKIKPRTLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L+++I K
Sbjct: 601 SRISGVSPSDISVLMVHISK 620


>gi|260591942|ref|ZP_05857400.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella veroralis F0319]
 gi|260536226|gb|EEX18843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella veroralis F0319]
          Length = 623

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/623 (40%), Positives = 362/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA +GA T LIT   + IG MSCNPAIGG+ KG +VRE
Sbjct: 1   MKFKYDVLVIGGGHAGCEAATAAANMGAMTCLITMDMNKIGQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    +  +   +NLD+ Q
Sbjct: 61  IDALGGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRTRLDHTDNLDIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      + N +  I       +   TV++T GTFL G++HIGK K+  GR  +   ++
Sbjct: 121 DQADELLVDNNKVLGIKTIWGIDLYARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHN 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +    + R+KTGTP R+D +++ +++ E Q  +     FS+        Q+ C 
Sbjct: 181 FTESITRHGIRSARMKTGTPVRIDRRSVHFEEMEPQPGESDYHQFSYHGQYRHLPQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TCNTNEEVHDVLRSGLAESPLFNGQIQSTGPRYCPSIETKLVTFPDKDSHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P +IQ   I  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPWDIQLSAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIID 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG+VAGIN+A      D     R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGIVAGINAALLCTGKDPFIMKRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT     +G     R   + +  +  + + +   + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTERAYNIGIAKRDRYDWWIQKKENIDRILNYCNTT 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +    ++     +       +    + ++ P  + +NL ++ P+ ++           +
Sbjct: 481 SVKPTEVNDFLVQLGTSPIKGSTKITDLVARPQVNFENLSAVMPNLKEVIETTPNRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++   E   I   F YS L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGHFKYSELHDLSTECRQKLEHIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|113955354|ref|YP_731984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Synechococcus sp. CC9311]
 gi|123327530|sp|Q0I6D8|MNMG_SYNS3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|113882705|gb|ABI47663.1| glucose-inhibited division protein A [Synechococcus sp. CC9311]
          Length = 649

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/614 (43%), Positives = 371/614 (60%), Gaps = 11/614 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  AA+LG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TEVFDVIVVGGGHAGCEAAITAARLGLSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+ADA  IQ RVLN  +GPAV   R Q D+  Y   M + +    NL + + 
Sbjct: 68  DALGGVIGRLADATAIQKRVLNASRGPAVWALRAQTDKRHYSREMLQLLHHTPNLALREA 127

Query: 123 EVAGFNTEKN-------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            V G   + +        I+ +     S+     VVLT GTFL G I +G   + AGR G
Sbjct: 128 MVTGLEVDGDPEPAGQARITGVRTYFGSVYGAQAVVLTAGTFLGGRIWVGHQSMSAGRAG 187

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKIT 234
           +  +  L ++  +  F T RLKTGTPAR+D ++I  D+ E Q +D     FSF  T   +
Sbjct: 188 EQAAEGLTDALKQLGFQTDRLKTGTPARVDRRSIALDQLEAQPSDAADRFFSFDPTAWAS 247

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIF
Sbjct: 248 GEQMSCHITRTTAATHQLIKDNLHLTAIYGGIIDSKGPRYCPSIEDKIVRFADKDSHQIF 307

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG +T  +Y  G ST LPE IQ + +RT+PGLE+  ++RP Y+++YDY+   +L P+
Sbjct: 308 LEPEGRDTPEIYVQGFSTGLPETIQLELLRTLPGLEQCVMLRPAYSVDYDYLPATQLKPS 367

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR     + + F R +SYIG MIDD
Sbjct: 368 LETKRVRGLFSAGQLNGTTGYEEAAAQGLVAGLNAARLIGGQEPVHFPRENSYIGTMIDD 427

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L S+ + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR + F   +Q     
Sbjct: 428 LVSQDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWQLFNDKLQAMEEE 487

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
           +  L+++ L   +  ++++  +       + T  + L        +L        +    
Sbjct: 488 KQRLETVRLKVSDPVASTVEKESGAPIRGSITLADLLRRSGVHSSDLVRHRLADAELPLA 547

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E  +I+  Y+ Y  RQ  +  ++K +  R +P D DY+S+  LS E +EKL+ ++P  
Sbjct: 548 VREGAEIDIKYSGYLQRQQQQIDQVKRQSLRKLPADLDYASIGTLSREAREKLTAIQPTT 607

Query: 592 LLQASKIEGMTPAA 605
           L QA+ I G++ A 
Sbjct: 608 LGQATHIPGVSQAD 621


>gi|86144116|ref|ZP_01062453.1| glucose-inhibited division protein A [Leeuwenhoekiella blandensis
           MED217]
 gi|85829378|gb|EAQ47843.1| glucose-inhibited division protein A [Leeuwenhoekiella blandensis
           MED217]
          Length = 625

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/622 (41%), Positives = 375/622 (60%), Gaps = 8/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDVIV+GGGHAGCEAAA AA  G+ T L+T    TI  MSCNPA+GG+ KG +VRE
Sbjct: 4   FEDIYDVIVVGGGHAGCEAAAAAANSGSKTLLVTMNLQTIAQMSCNPAMGGIAKGQIVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G V+D   IQF++LN  KGPA+  PR Q+DR  +    +  + +  NLD  Q
Sbjct: 64  IDALGGYSGIVSDKTAIQFKMLNKSKGPAMWSPRVQSDRMRFAEEWRLMLENTANLDFYQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V G   E + ++ +       I+  +V+LT GTFL G+IHIG+ +   GR G+  +  
Sbjct: 124 EMVNGLLVEGDRVAGVRTSLGIEIKSKSVILTNGTFLNGLIHIGEKQFGGGRAGERKATG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FSF    K   +Q  C
Sbjct: 184 ITEQLVDLGFDSGRMKTGTPPRVDGRSLDFSKMIEQPGDEDPQKFSFSNATKPLTKQRSC 243

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ++ T+ E H ++ E    S +++G I+S GPRYCPSIEDKI RF +++ HQ+F+EPEG 
Sbjct: 244 QMSYTSPEVHNLLREGFDRSPMFNGRIQSTGPRYCPSIEDKINRFADKDRHQLFVEPEGW 303

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT   Y NG ST+LPEE+Q + +R + G E V   RPGYAIEYDY  P +L  TLETK +
Sbjct: 304 NTIEYYVNGFSTSLPEEVQFKALRQVSGFENVKFFRPGYAIEYDYFPPTQLKHTLETKLV 363

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ AGQINGTTGYEEAA+QGLVAG+N++ K  + D     R ++YIGV++DDL +KG 
Sbjct: 364 DGLYFAGQINGTTGYEEAASQGLVAGLNASLKVQEKDPFILKRDEAYIGVLVDDLITKGT 423

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR  LR DNAD RLTP   ++G   + R +   K   +   L     +
Sbjct: 424 KEPYRMFTSRAEYRTLLRQDNADARLTPRSFEVGLASKERMQALEKKEAQAVNLVEFFNT 483

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVI 533
             +  +  +            ++    +  S P  +++++ S              + V+
Sbjct: 484 TSIQPEEANPVLAEKGTTPMKQSDKMVKIFSRPQIALEDMLSFKDVKEYVAENNLETEVL 543

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+ +I   Y+ Y  ++   A +++  E   IP +FDY+ L +LS E +EKL+ ++P  + 
Sbjct: 544 EQAEIRIKYSGYIEKEKANADKLQRLENIKIPDNFDYTKLKSLSYEAREKLTKIQPTTIS 603

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS++ G++P+ ++++L+Y+ +
Sbjct: 604 QASRVSGVSPSDISVMLVYMGR 625


>gi|322800358|gb|EFZ21362.1| hypothetical protein SINV_03566 [Solenopsis invicta]
          Length = 849

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/629 (46%), Positives = 402/629 (63%), Gaps = 15/629 (2%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           +IN++ +DVIV+GGGHAG EA+A A ++GA T L+T K STIG MSCNP+ GG+GKGHL+
Sbjct: 220 LINKNKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLM 279

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           RE+DALDG+  R+ D +GI +RVLN +KGPAV G R Q DR LY+  +Q E+ +   L +
Sbjct: 280 REVDALDGVCCRICDISGIHYRVLNKRKGPAVWGLRAQIDRALYKKYLQAELFNMPGLHI 339

Query: 120 IQGEVAGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  V     E        ++++D + I    VV+TTGTFL+G I+IG  K PAGR+ D 
Sbjct: 340 YESSVEDLILENEPLSCQGVILKDGTKIFGDAVVITTGTFLKGQINIGLEKRPAGRLNDE 399

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           PS  L N+  +  F  GRLKTGTP RL+  +I + K +K   DE  IPFSFM+D +    
Sbjct: 400 PSIGLANTLERLGFQIGRLKTGTPPRLEKDSIDFTKCKKSLPDESPIPFSFMSDNVWLPP 459

Query: 238 ---IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
              +   +T TN +  +II +N+  +   + +I   GPRYCPSIE KI+RF     HQI+
Sbjct: 460 DKQVLTYLTFTNEKVAQIIRDNMHCNLHVTEEIS--GPRYCPSIESKILRFKAL-QHQIW 516

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEGL++ ++YP+G+S  LPE+ Q + ++ IPGLE   +IRPGY +EYDY++P+EL   
Sbjct: 517 LEPEGLDSPLIYPSGLSCTLPEDKQVELVKCIPGLENACLIRPGYGVEYDYVDPRELTTQ 576

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETKKI  LFLAGQINGTTGYEEAAAQG+VAG+N+A K  K   +  SRT+ YIGV+IDD
Sbjct: 577 LETKKIPRLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVFKKPPLLISRTEGYIGVLIDD 636

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT++G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+   R +R  K  ++    
Sbjct: 637 LTTEGTTEPYRMFTSRSEFRVSLRPDNADQRLTEKGYTIGCVSRERLERTKKVFRKMQEA 696

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSY--PDFSIQNLFSICPDARKFSSL 531
             +LKS V T        +I   +    ++A+E LS    + +   L  + PD +     
Sbjct: 697 IQILKSDVRTCTKWRQLLNIKKSKAVDHKSAFEMLSLTTEEVTFARLAKLLPDLQYLDRD 756

Query: 532 --VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILK 588
             +  R++IE+ Y      Q  +  +IK  E+  IP D DY+S    LSNE +EKLS   
Sbjct: 757 PNLTRRIEIEAKYGYIVAEQQDQVNDIKRNEQMTIPDDIDYNSPKLNLSNEDREKLSKYL 816

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           P  +  A+KI G+TP+A+  LL Y+K ++
Sbjct: 817 PRTIAAANKISGVTPSAILRLLFYVKHHS 845


>gi|291514794|emb|CBK64004.1| glucose-inhibited division protein A [Alistipes shahii WAL 8301]
          Length = 673

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/669 (40%), Positives = 382/669 (57%), Gaps = 59/669 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+IVIGGGHAGCEAA+ AA+LG+ T L+T   + + +MSCNPA+GG+ KG +VRE
Sbjct: 1   MTLDYDIIVIGGGHAGCEAASAAARLGSRTLLLTMDMAKLAAMSCNPAVGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MGR+ D   IQFR+LN  KG A+  PR Q D+  +    +R + +  NL + Q
Sbjct: 61  IDALGGQMGRITDLTTIQFRMLNRSKGAAMWSPRAQCDKTRFSEEWRRTLENTWNLYIWQ 120

Query: 122 GEVAGFN--------------------------------------------------TEK 131
                                                                      K
Sbjct: 121 DAATELLFAPAPETNAAPSDNLPDETTTSFNSAPGTISSAAESDADSDPTLRNAPSAAGK 180

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             I  +  +      C  V+LT+GTFLRGV+H G      GR GD+ S+ +  S     F
Sbjct: 181 LAIRGVRTRMGVEFSCRKVILTSGTFLRGVMHCGASHAEGGRAGDAASHGITESLRAIGF 240

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETH 250
           +TGR+KTGTPARLD +TI ++  E Q+ DE    FSF  + K    Q+ C +  T+ E H
Sbjct: 241 ETGRMKTGTPARLDARTIDFEILEPQYGDENPAKFSFSPETKPIKEQLPCFLVYTSKEVH 300

Query: 251 RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGI 310
            I+      S +++G I   GPRYCPSIEDK+  F +++ HQ+FLEPEG +T+  Y NG 
Sbjct: 301 DILRTGFDRSPLFNGTICGIGPRYCPSIEDKLRTFADKDQHQLFLEPEGSSTNEYYLNGF 360

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQIN 370
           S++LP E+Q + +  I G E ++I RPGYAIEYDY  P +L  +LETK +SGL+ AGQ+N
Sbjct: 361 SSSLPWEVQWKALHKIRGFEDLHIFRPGYAIEYDYFPPTQLHHSLETKLVSGLYFAGQVN 420

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           GTTGYEEAAAQGL+AGIN+ R       +   R ++YIGV+IDDL +KGV EPYRMFTSR
Sbjct: 421 GTTGYEEAAAQGLIAGINAHRAMKGESPVVLKRDEAYIGVLIDDLVTKGVDEPYRMFTSR 480

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
           AEYRI LR DNAD RLTP+G K+G I +++   F K       L S  +   + +  ++ 
Sbjct: 481 AEYRILLRQDNADIRLTPLGYKIGLISQKQYDHFTKKNTLVESLISFAREQSVKAAEIND 540

Query: 491 --TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIERLQIESSY 542
              S+  +   + R  Y+ L   + +  +L +  P  RKF      +   IE  +I+  Y
Sbjct: 541 YLKSVDSEPLSQGRKLYDILMRNNVTFDSLQNALPKLRKFIAANEITPEAIEETEIQIKY 600

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  R+   A++++  E   IP++FD+ S+ AL+ E ++KLS ++P  + QAS+I G++
Sbjct: 601 KGYIEREKFIAEKLRRLENIRIPENFDFHSMNALTIEARQKLSRIRPETIGQASRIPGVS 660

Query: 603 PAALNLLLI 611
           PA +N+LL+
Sbjct: 661 PADVNVLLV 669


>gi|330813393|ref|YP_004357632.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486488|gb|AEA80893.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 620

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/605 (52%), Positives = 417/605 (68%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAAA +A++G STAL+T   ++IG MSCNPAIGGLGKGHLVREIDA DG+M +V+D
Sbjct: 13  HAGCEAAAASARMGVSTALVTTNKNSIGEMSCNPAIGGLGKGHLVREIDAFDGVMPKVSD 72

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
           A+GIQF++LN  +GPAVRGPRTQ+DR LY+  M   ++S  NL++I   V  F  E++ I
Sbjct: 73  ASGIQFKLLNASRGPAVRGPRTQSDRALYKKNMLENLISHCNLNIIYDPVTSFVFEQDNI 132

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
            SI++     I+   ++LTTGTFL GVIHIG    PAGR G++P++ L     KF+   G
Sbjct: 133 KSIILASGKEIKFKKIILTTGTFLNGVIHIGSQMTPAGRFGEAPTSGLSEQLQKFNLMFG 192

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           RLKTGTP RLD +TI +D  EKQ ADE    FS  T KI ++QI C IT TN E H+II 
Sbjct: 193 RLKTGTPPRLDARTINFDSLEKQVADENPFFFSTETKKINSKQIACSITYTNDEVHKIIS 252

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
            NIK SA+YSG+IK  GPRYCPSIEDKIV+F ++  HQIFLEPEGLN   +YPNGIST+L
Sbjct: 253 RNIKKSAMYSGNIKGVGPRYCPSIEDKIVKFADKQRHQIFLEPEGLNDHTIYPNGISTSL 312

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           PE++Q + +  I GL +V +IRPGYAIEYDY++P+EL  TLE KKIS  +LAGQINGTTG
Sbjct: 313 PEDVQREILFNINGLSEVKMIRPGYAIEYDYVDPRELKSTLELKKISSFYLAGQINGTTG 372

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQGL+AG+N++      + +   R+ +YIGVMIDDL +KGV EPYRMFTSRAEYR
Sbjct: 373 YEEAAAQGLMAGLNASLAVKGHEPLILDRSQAYIGVMIDDLITKGVAEPYRMFTSRAEYR 432

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS 494
           ++LR DNAD RL+PI M++GC+   R K+  + I++ + ++  L ++ L+        IS
Sbjct: 433 LTLRADNADLRLSPIAMRIGCVSLERCKKIEEKIKKIDMVKISLSNVSLSPNEAKKHGIS 492

Query: 495 FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
              DG  R   + L Y +     L SI  +       +I +L+IE+ Y  Y  +Q  + K
Sbjct: 493 ISMDGVKRNGIDLLRYKNVDYDKLKSIFKELPDSEEDIIGQLKIENHYKGYYAKQDADIK 552

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + K +E   +P D DY  +  L+ E+K KL ++KP    QA +I+GMTPAA+NLLL + K
Sbjct: 553 KFKKDENLKVPSDIDYDKISGLTEEVKNKLRVVKPETFGQALRIDGMTPAAINLLLAHTK 612

Query: 615 KNTVK 619
           +   K
Sbjct: 613 RYKFK 617


>gi|281424807|ref|ZP_06255720.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris F0302]
 gi|281401177|gb|EFB32008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella oris F0302]
          Length = 623

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/623 (41%), Positives = 363/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAAA +A +GA T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MELKYDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   ENLD+ Q
Sbjct: 61  IDALGGNMGIVTDRTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTTLDHTENLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      + N    +           ++V+T GTFL G++H+G+  I  GR  +   + 
Sbjct: 121 DQADELIVKNNEAVGVKTIWGVTFYAKSIVVTAGTFLNGLMHVGRKMIEGGRCAEPAVHH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++   + R+KTGTP R+D +T+ +D+ E+Q  D     FS+M +    RQ+ C 
Sbjct: 181 FTGSITRWGITSARMKTGTPIRIDKRTVHFDEMEEQKGDTDFHQFSYMGEHRILRQLSCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T TN E H  + + +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +
Sbjct: 241 TTYTNKEVHETLRKGLTDSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGED 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P +IQ   I  IP    V I RPGYAIEYDY +P +L  +LE+K + 
Sbjct: 301 TNEMYLNGFSSSMPMDIQLAAIHKIPAFRDVKIYRPGYAIEYDYFDPTQLKHSLESKILP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG+VAGIN+A      +     R  SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGIVAGINAALHCTGSEPFIMQRDQSYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT I   LG     R   + +  +  + L    K  
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEIAYNLGIAKRNRYDWWHQKKEAVHRLIHFCKEY 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++S   S+            + ++ P  ++QNL  I P+ ++           +
Sbjct: 481 PIKASEINSQLESLGTTPLRAGCKLSDLIARPHLTLQNLSEIIPELKEALQIPENRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ I A ++   E   I   F+YS L  +S E ++KL  + P  L
Sbjct: 541 AEATEIQMKYQGYIERERIIADKMHRLENIKIKGRFNYSELQEISTEGRKKLEKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LLI + +
Sbjct: 601 AQASRIPGVSPSDINVLLILLGR 623


>gi|2258459|gb|AAB63296.1| GidA [Helicobacter pylori]
          Length = 621

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/626 (43%), Positives = 371/626 (59%), Gaps = 15/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E + +  +    N+  R   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +  F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDANPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN  TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            +  Y NG+ST+LP ++Q + I +I GLE   I R GYAIEYD+I P EL   LETKKI 
Sbjct: 301 KNEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHALETKKIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAA QGL+AGIN+             R ++YIGV+IDDL +KG  
Sbjct: 361 GLYLAGQINGTTGYEEAADQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN   RL     +LG + +   K   K  QE       LK  
Sbjct: 421 EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEQDFYKELKKDKQEIQDNLKRLKEC 480

Query: 482 VLTS--------KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           VLT           L    I+ K +G +      L+   F+ + + S        +  V+
Sbjct: 481 VLTPSKKLLKRLNELDENPINDKVNGVS-----LLARDSFNAEKMRSFFSFLAPLNERVL 535

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E+++IE  Y  Y  +Q     ++    K  IPK F +  +P LS E  EKL   +P +L 
Sbjct: 536 EQIKIECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLF 595

Query: 594 QASKIEGMTPA--ALNLLLIYIKKNT 617
           +AS+I G+TPA   +  L I+++KN+
Sbjct: 596 EASEISGITPANLDVLHLYIHLRKNS 621


>gi|90421814|ref|YP_530184.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris BisB18]
 gi|122477630|sp|Q21CM1|MNMG_RHOPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|90103828|gb|ABD85865.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           BisB18]
          Length = 625

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/619 (53%), Positives = 441/619 (71%), Gaps = 1/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MQTSFDVIVIGGGHAGCEAAAAAARLGATTALVTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVAD  GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  IL+  +L V++
Sbjct: 61  VDALDGLMGRVADQGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQALILATPHLSVVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E     T    I+ I + D   +    VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 AEADDLLTSDGRITGIRLADGRELGAGAVVITTGTFLRGLIHLGERSWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF +  F  GRLKTGTP RLDG++I W   E Q  DE   PFS +T+KITN QIECG
Sbjct: 181 LSKSFERLGFALGRLKTGTPPRLDGRSIDWGAVEMQPGDEPPEPFSVLTEKITNPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S +YSG I+S GPRYCPSIEDKIVRFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTTPATHAVIRANVHRSPMYSGQIQSSGPRYCPSIEDKIVRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGL++  ++RPGYAIEYD+++P+EL PTL+ K++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILATIPGLQRTTMLRPGYAIEYDHVDPRELEPTLQAKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGTTGYEEAAAQGLVAG+N+A  ++    I F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLFLAGQINGTTGYEEAAAQGLVAGLNAALLASGGGEIAFDRADGYLGVMIDDLVTRGIT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R +     +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTGQGIALGCVGAERTEFHTAKMAALAQAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG  R+A+E L+YP+     + +I P+       +   L+I+++
Sbjct: 481 AITPSQAAKHGLSLNRDGVRRSAFELLAYPEVDWARVEAIWPELAAIEPSIATHLEIDAT 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +  + +E  L+  + DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YDVYLKRQTADVEGFRRDEGLLL-TEIDYALVPGLSNEARGRLEKARPRTVGQAGRLDGL 599

Query: 602 TPAALNLLLIYIKKNTVKL 620
           TPAAL +L  Y++++  + 
Sbjct: 600 TPAALGILAAYLRRDQRRK 618


>gi|325970664|ref|YP_004246855.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta sp. Buddy]
 gi|324025902|gb|ADY12661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Spirochaeta sp. Buddy]
          Length = 603

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/615 (40%), Positives = 382/615 (62%), Gaps = 17/615 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IV+GGGHAG EA    +++G ST LIT    TIG +SCNPAIGGL KG+LVRE+DA
Sbjct: 2   DYDAIVVGGGHAGIEAGLALSRIGFSTLLITQNLDTIGKLSCNPAIGGLSKGNLVREVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M  + D + IQ+R+LN ++GPAV+ PR QAD+  Y    +  + ++ NL +    V
Sbjct: 62  LGGEMAHLIDHSMIQYRILNRRRGPAVQAPRAQADKFTYARLAKETLEAEHNLALFMDTV 121

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                + +  +  +V      I C  +VLTTGTF+ G I IG+     GR+ +  +  L 
Sbjct: 122 VDILLDDHNRLVGVVTDRRHTITCKVMVLTTGTFMEGRIFIGEYDASNGRLDEPAAIGLG 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           ++  +  F  GR+KTGTPAR+   ++ +D  E Q  +E ++PFSF  + +    + C IT
Sbjct: 182 SALRRKGFPVGRMKTGTPARVRRSSLDFDTMEVQDGEEHMMPFSFDYNSVDRPALPCYIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+II +NI  S +Y G I   GPRYCPSIEDK+VRF +R+ HQIF+EPEG+ T+
Sbjct: 242 WTNENTHQIIRQNIHRSPLYGGKIVGKGPRYCPSIEDKVVRFPDRDRHQIFVEPEGVGTE 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NGIS++LPE++QH FI +I GLE   I+RP YA+EYD+I+P+ LFP+LE+K +  L
Sbjct: 302 EMYLNGISSSLPEDVQHAFIHSIAGLEHAQIMRPAYAVEYDFIDPQALFPSLESKLVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQ NGT+GYEEAA QGL+AGIN+A+K      +  SR ++Y GV+IDDL + G  EP
Sbjct: 362 FIAGQTNGTSGYEEAACQGLMAGINAAQKLKGEKPLVLSRNEAYTGVLIDDLVTMGTQEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR++LR D+ D RLT  G  +G   +   +R  + + + + ++ LL++  L
Sbjct: 422 YRMFTSRAEYRLNLRHDSCDQRLTAKGFAVGLQKQENLERLQEKLAKMDAVKDLLRARRL 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
                           + ++A + L  PD ++ +L +  P+ + +   ++ +++++  Y 
Sbjct: 482 ----------------QEKSALQALRMPDLTMSDLVAYIPELKAYEEPILYQVELDVKYE 525

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  +    +  E  LI ++ +Y ++  LS E KEKL  ++P ++ QA++I G+  
Sbjct: 526 GYINRQDRQVSRFEKLESLLIDENLNYDAIDGLSAEGKEKLKKVRPLSVGQATRINGVRN 585

Query: 604 AALNLLLIYIKKNTV 618
             + +L++++ +   
Sbjct: 586 GDIAVLIVHLDRGGR 600


>gi|289450689|ref|YP_003475558.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185236|gb|ADC91661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 658

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/632 (39%), Positives = 362/632 (57%), Gaps = 21/632 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIG GHAGCEAA  AAKLG  T L +     + ++ CNP+IGG  KG LVREIDAL 
Sbjct: 19  DVAVIGAGHAGCEAAVAAAKLGCRTVLFSLTLDAVANLPCNPSIGGTAKGQLVREIDALG 78

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG++AD   IQ+R+LN  KGPAV+ PR Q DR LY+  M+  + +  NL + Q EV  
Sbjct: 79  GVMGKIADKCAIQYRMLNSSKGPAVQSPRAQIDRRLYQETMKSYLETVPNLHLFQAEVVN 138

Query: 127 FNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              E             +S +V ++ ++  C  V++ TGT+L G + IG+    +G    
Sbjct: 139 ILIETENEIESDLKLGKVSGVVTRNGAIFTCKKVIIATGTYLAGKVFIGEHNYASGPDNS 198

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            P+  L  +         R KTGTP R++  ++ + + E Q  D+ L  FSF  +    +
Sbjct: 199 QPAAELAINLRNLGLPLRRFKTGTPVRVNKYSVDFKQMESQTPDKDLWRFSFDYENSPQK 258

Query: 237 QI----ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +     C +T T  +T  II EN+  S +YSG I+  GPRYCPSIEDKIVRF ++  HQ
Sbjct: 259 DLLPQQNCWLTWTTGDTAEIIRENLYRSPLYSGQIEGIGPRYCPSIEDKIVRFPDKLRHQ 318

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           IF+EP G  T  +Y  G+S++LPE++Q + + ++PGL +  I R  YAIEYD + P  L 
Sbjct: 319 IFIEPMGQTTAEMYLQGLSSSLPEDVQLKIVHSLPGLAEAVIQRSAYAIEYDCLPPTCLK 378

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L+T+ I+GL+ AGQ NGT+GYEEAAAQGLVAGIN+AR  +    +  SR  +YIGV+I
Sbjct: 379 NDLQTRLIAGLYGAGQFNGTSGYEEAAAQGLVAGINAARACHLQQPLVLSRDQAYIGVLI 438

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG  EPYRM TSRAEYR+ LR DNAD RL  +G  LG   + R  R+        
Sbjct: 439 DDLVTKGTNEPYRMMTSRAEYRLLLRQDNADERLIELGYNLGLNSQERLDRYMNKAAAIA 498

Query: 473 FLRSLLKSLVLT-----SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
                L  + +T     +  L+   +   Q G   T  + L  P+ S + L  I     +
Sbjct: 499 KEIKRLNEVKVTGTAAINDYLAEQGVPALQGGT--TLAQLLLRPNMSYEKLAPIDQTRPE 556

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
              ++ +  +I   Y  Y   +    ++ +  E++L+P + DY+ +  L  E K+KLS  
Sbjct: 557 LPQVIKDGAEIRIKYQGYIALEEKRIEKFRKMERKLLPPEIDYNDIGGLRIEAKQKLSQF 616

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           +P ++ QA++I G++PA +++LL+Y++    +
Sbjct: 617 RPMSIGQAARISGVSPADISVLLVYLELKRRE 648


>gi|218258581|ref|ZP_03474924.1| hypothetical protein PRABACTJOHN_00579 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225351|gb|EEC98001.1| hypothetical protein PRABACTJOHN_00579 [Parabacteroides johnsonii
           DSM 18315]
          Length = 625

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/625 (40%), Positives = 364/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA +A LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAASANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR+Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDRTAIQFRMLNQSKGPAMWSPRSQSDRARFIECWRGILENLPNLYIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + N I  +           +VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DTVRELLLDGNTICGVKTDMGVEFHAKSVVLTNGTFLNGLMHIGRTQIRGGRIAEPAAFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     + R+KTGTP R+D +++ +D+  +Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLVSLGIKSERMKTGTPVRIDARSVHFDEMAEQPGENDFHKFSYMDTSHRVLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H ++ E +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHAVLREGLPDSPLYNGQIRSIGPRYCPSIETKIVTFADKPQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP EIQ + ++ IP    + I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 TTQEYYLNGFSSSLPLEIQLRALQQIPAFRDIQIYRPGYAIEYDFFDPTQLHHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +  +     R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGEPFVLGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT     LG   + R     +     + + +   +
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYALGLAKQDRYDLLNEKKTSRDAIIAFAAN 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S   ++            E +  P  +++N+  + P  R +          
Sbjct: 481 YSIKPQYINSGLETLGTTPLAHGCKLIELIPRPQITLENIAELVPAFRAELDKVPVSRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIRREQIIADKINRLENIHIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|327540978|gb|EGF27534.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Rhodopirellula baltica WH47]
          Length = 667

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/603 (43%), Positives = 364/603 (60%), Gaps = 21/603 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL GLMG   DA GIQFR+LN +KGP
Sbjct: 50  KTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDALGGLMGEAIDATGIQFRMLNRRKGP 109

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE----------KNIISSIVM 139
           A+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V    TE             +  + +
Sbjct: 110 AMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVEDLITEPIADGQDRLANQRVIGVRV 169

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
           + +++    TV+LTTGTFL+ ++H GK +   GR G+  +  L  +  +  F   R KTG
Sbjct: 170 RGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAGEGTTAGLSGALKRMGFTLDRFKTG 229

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKH 259
           TP RL+ +TI +   E+Q  D+   PFS++ D I++ Q+ C I  TN   H +I  N+  
Sbjct: 230 TPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISSPQMACHIAHTNERVHDLIRANLGR 289

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FLEPEG  T  VY NGIST+LP ++Q
Sbjct: 290 APMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFLEPEGRQTCEVYVNGISTSLPRDVQ 349

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
               R IPGLEK  I+R GYA+EYDY  P +L+P LE+K +SGLF AGQINGTTGYEEAA
Sbjct: 350 DAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHLESKSVSGLFFAGQINGTTGYEEAA 409

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
            QGL+AG+N+AR +        SR D+YIGV++DDL + G  EPYRMFTSRAEYR+ LR 
Sbjct: 410 GQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDLVTSGTDEPYRMFTSRAEYRLLLRQ 469

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG 499
           DNAD RLT    +LG I   R++RF + + E      LL+      +            G
Sbjct: 470 DNADRRLTAQADELGLIDAARRERFHRKLAEIERGTELLQQAKFQPET-----------G 518

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
            T     +L  P+ +   +    P+         E+  I+  YA Y  RQ  E  +    
Sbjct: 519 PTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQCSIDIKYAGYIDRQQAEVHKQSRH 578

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ++ IP  FDY  +  L NE KEKL+ ++P NL QA +I G+TPA L L+L +++ N++ 
Sbjct: 579 AEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQAKRISGITPADLALVLAHLENNSLS 638

Query: 620 LNE 622
             +
Sbjct: 639 QTK 641


>gi|309775308|ref|ZP_07670317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916971|gb|EFP62702.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 618

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/617 (41%), Positives = 372/617 (60%), Gaps = 7/617 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAG EAA   A+L  +T L +     I SM CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVIGGGHAGVEAALACARLKKTTILYSMHIDMIASMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG+ ADA  +QF++LN  KGP V+  R Q+D+  Y+  MQ+++L Q +L+V +  V  
Sbjct: 63  GEMGKAADATALQFKMLNTTKGPGVQCLRVQSDKLAYKQYMQQKVLQQPHLEVREMCVEQ 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   ++ I  +D  ++ C  +++TTGTF+   I +G     +G   +  + +L  S 
Sbjct: 123 VLAEDGRVTGIRQKDGVVVNCRALIVTTGTFMSSSILVGHTSTLSGPEDEPTTENLSQSL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITR 244
            +    T RLKTGTPAR+   +I + KT  Q   +  I FS  T +I    +Q  C +T 
Sbjct: 183 RELGIQTFRLKTGTPARVLTSSIDFTKTAIQPGTDAFICFSQDTKEIRPFDKQAVCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II  N++ SA+YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE  + D 
Sbjct: 243 TTAKTHDIINRNLERSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQIFLEPESESLDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++P ++Q + + ++PGLE   I +  YAIEYD I+P +  PTLE K +  L+
Sbjct: 303 TYVQGFSTSMPHDVQEEMLHSLPGLENCVIEKYAYAIEYDAIDPLQCKPTLENKLVENLY 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+ RK ++ + +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLIAGINAVRKLDQKEPLILHRDEAYIGVMIDDLVTKGTKEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAEYR+ LR DNAD RL+  G  +G + + R  RF K +++     S L S+  T
Sbjct: 423 RLLTSRAEYRLLLRHDNADARLSRYGHDIGLLSDERFARFEKKMKDIEETISYLDSVRFT 482

Query: 485 SK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K   N    ++S     +  +A E L  P  +I  L       R+    + + ++IE  
Sbjct: 483 PKSTVNELLQTLSLDVLKEGISAAELLKRPGVTIDLLQPYL--DRRIDIAIAKLVEIEIR 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   +A+ ++  ++  +P+ FDY  +  LS E ++KL+ ++P  + QAS+I G+
Sbjct: 541 YEGYIKKAKRDAQHLRAMDQVRLPEHFDYDQVVNLSLEARQKLNKIQPLTMGQASRISGV 600

Query: 602 TPAALNLLLIYIKKNTV 618
            PA + +L +++++   
Sbjct: 601 NPADIAVLAVFMEQQKR 617


>gi|217077029|ref|YP_002334745.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho africanus TCF52B]
 gi|217036882|gb|ACJ75404.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermosipho africanus TCF52B]
          Length = 624

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/619 (41%), Positives = 369/619 (59%), Gaps = 9/619 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++++DVIV+G GHAG EAA   A+LG  T L+T     +G   CNPAIGG  KG +VREI
Sbjct: 9   DKNFDVIVVGAGHAGIEAALSTARLGLRTLLLTTNLDNVGWAPCNPAIGGPAKGIVVREI 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M +  D   I  R+LN  KGPAVR  R Q D+  Y   M+ ++ +QENL +  G
Sbjct: 69  DALGGEMAKTTDETMINVRMLNTGKGPAVRALRAQIDKFEYSKLMKNKLQTQENLILRYG 128

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E   +  +V           V+LTTGTFLRG I IG+  + AGRMGD P+  L
Sbjct: 129 VVEKVLVESGKVKGVVDSFGIDYYAKAVILTTGTFLRGKIFIGRDTMEAGRMGDLPAKGL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECG 241
             S ++  F   R KTGTPAR+   +I + K  +Q  D+    FS F   K+  +   C 
Sbjct: 189 SKSLLELGFKLSRFKTGTPARVLKSSIDFSKMIRQDTDDEPRAFSYFSEPKVLPKDHPCW 248

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +T TN +TH+II + + +S +Y     I+S GPRYCPSIEDK+V+F  R+ HQ+F+EPEG
Sbjct: 249 LTHTNQQTHKIIRDYLVYSPLYGDVKLIQSVGPRYCPSIEDKVVKF-NRDSHQVFVEPEG 307

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            N+   Y NG+ST+LP   Q + +RT+PGLE V I+RP YAIEYDYI+P +LF TLE+K 
Sbjct: 308 RNSQEFYLNGLSTSLPYAAQVKMLRTVPGLENVVIVRPAYAIEYDYIDPTQLFQTLESKI 367

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGT+GYEEAA QGL+AGIN+A K    + +   R++SYIG++IDDLT+KG
Sbjct: 368 VEGLYFAGQINGTSGYEEAAGQGLIAGINAAMKILGEEPLILKRSESYIGILIDDLTTKG 427

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G ++G I +   ++     ++  +    LK
Sbjct: 428 VDEPYRLLTSRAEYRLLLRHDNAHLRLAKYGYRVGLIPKWFYEKVINLEKQIQYQIERLK 487

Query: 480 SLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
           ++ + + ++ +     +      +    Y  L  P+    ++     +  +    ++E++
Sbjct: 488 NVKVPASDIVNDRLVELGSTPLKEGTKLYNLLKRPEIEYGHVKEFDSEPIE-DRELLEQI 546

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I   Y  Y  + + + K  +  E   I K  ++  +P LS E +EKL  + P ++ QA 
Sbjct: 547 EILIKYEGYIEKMLEDVKVFEEYESVDISK-INFDKVPNLSTEAREKLKKILPRSIGQAM 605

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TP+ +  ++ YI+K
Sbjct: 606 RIPGVTPSDIANIISYIEK 624


>gi|256419795|ref|YP_003120448.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chitinophaga pinensis DSM 2588]
 gi|256034703|gb|ACU58247.1| glucose inhibited division protein A [Chitinophaga pinensis DSM
           2588]
          Length = 622

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/619 (41%), Positives = 371/619 (59%), Gaps = 8/619 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAAA AA +G+   L+T    TI  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   SYDVIVVGAGHAGCEAAAAAANMGSKVLLVTMNMQTIAQMSCNPAMGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G  G + D + IQFR+LN  KGPA+  PRTQ DR L+    +  +    N+D  Q  V
Sbjct: 64  LGGYSGIITDQSMIQFRMLNRSKGPAMWSPRTQNDRMLFAAKWREALEQTPNVDFYQDMV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   +      +V      I+  +VVLT GTFL GV+HIG  +   GR+ +  +  +  
Sbjct: 124 KGLLVKDGRCYGVVTGLGHEIKAKSVVLTNGTFLNGVMHIGDKQFGGGRVAEKAATGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQI-ECGI 242
             +   F++ RLKTGTP R+D +++ + K E+Q  D+ +  FS++  +KI   Q   C I
Sbjct: 184 QLVSLGFESDRLKTGTPPRIDARSLDYSKMEEQPGDDVITGFSYLDVEKIKPEQQRSCHI 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ + H ++      S ++ G I+  GPRYCPSIEDKI RF ER+ HQ+F+EPEG NT
Sbjct: 244 TYTSDKVHEMLKTGFDRSPMFQGRIQGVGPRYCPSIEDKINRFAERDRHQLFVEPEGWNT 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y NG ST+LPE++Q++ ++ +PG E V + RPGYAIEYDY  P +L  +LETK I  
Sbjct: 304 VEIYVNGFSTSLPEDVQYKALQLVPGFENVKMFRPGYAIEYDYFPPTQLQFSLETKHIQN 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAA QGL+AGIN+  K++        R+++YIGV+IDDL +KG  E
Sbjct: 364 LFFAGQINGTTGYEEAACQGLMAGINAHLKASGQAPFVLKRSEAYIGVLIDDLINKGTDE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAE+R  LR DNAD RLT    ++G   + R  +     +    ++++LK L 
Sbjct: 424 PYRMFTSRAEFRTLLRQDNADLRLTEQSFEMGLARQNRLDKVIVKKEGVEKIKAILKELP 483

Query: 483 LTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSI----QNLFSICPDARKFSSLVIERL 536
           +  + ++            +   AY+ L  P   I     ++  I     +F    +E+ 
Sbjct: 484 VDPEEINHLLAEKNTSPLPQRMRAYQILLRPTMDIFSMKNHVAKIGKALAEFGDETLEQA 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  ++    K +   E  LIP  FDY+ L +LS E ++K + ++P  L QAS
Sbjct: 544 EIQIKYEVYIEKENDLVKRMSQMEDLLIPDGFDYTKLVSLSAEARQKFNKIRPRTLGQAS 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+ P+ + +L++Y+ +
Sbjct: 604 RISGVNPSDVQILMVYMGR 622


>gi|307128531|ref|YP_003880561.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           mnmG/GidA [Candidatus Sulcia muelleri CARI]
 gi|306482993|gb|ADM89863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           mnmG/GidA [Candidatus Sulcia muelleri CARI]
          Length = 613

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/627 (42%), Positives = 371/627 (59%), Gaps = 20/627 (3%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+GGGH+G EAA  A+ LG+ T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVNQYDVIVVGGGHSGSEAALAASNLGSRTLLITTNLYNIGQMSCNPAMGGIAKGQIIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +    NL   
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKNVNLSFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     + N +  +       I+  +V+LT GTFL G+IHIG  K   GR+ ++   
Sbjct: 121 QDTVIDLIIKNNKVIGVKTIFGISIKSKSVILTNGTFLNGIIHIGNKKKNGGRISENSVK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L     K  F +G++KTGT  RLDG ++ + K  +Q  D  + PFS ++      + +C
Sbjct: 181 GLTEKLKKIGFLSGKMKTGTSPRLDGNSLNYSKMIEQLGDYPIEPFSSLSKLKIKNKKKC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN++TH+++ E    S +++G+IK  GPRYCPSIE+KI RF  +  HQIF+EPEG+
Sbjct: 241 YITYTNVKTHKLLREKFHKSPLFNGNIKCVGPRYCPSIEEKIYRFSNKENHQIFVEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG ST++PE+IQ++ + TIPG EK  +IRPGYAIEYDY  P +L   LETK I
Sbjct: 301 NTREVYINGFSTSMPEKIQYKALITIPGFEKAKMIRPGYAIEYDYFTPTQLKNNLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAAAQGL+AGIN+  K N+       R ++YIGV+IDDL  KG 
Sbjct: 361 ENLFFAGQINGTTGYEEAAAQGLIAGINANLKINEKKPFIIKRNEAYIGVLIDDLIYKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLTPIG KLG +   R K+  K I++          
Sbjct: 421 EEPYRMFTSRAEYRILLRQDNADERLTPIGEKLGLVSFDRIKKLEKKIKKIKK------- 473

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN-----LFSICPDARKFSSLVIER 535
                          K+  +     + LS P+  I +     L          +  ++E+
Sbjct: 474 --------CLFFFKKKKIKENIKICDLLSRPEIDINDIIKYSLIKDFIKKNNINKKILEQ 525

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I   Y  Y  ++    K++   E   IP +F+Y+ + ++S E +EKL   KP ++ +A
Sbjct: 526 ISILIKYKGYLLKEEENVKKMLRLENIRIPNNFNYNKVKSISIEAREKLINYKPNSIGEA 585

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
           S+I G++P+ +++L+I+++K   K  +
Sbjct: 586 SRISGVSPSDISILIIFLRKKNKKYEK 612


>gi|328870532|gb|EGG18906.1| Glucose inhibited division protein [Dictyostelium fasciculatum]
          Length = 724

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/629 (47%), Positives = 405/629 (64%), Gaps = 18/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDV+VIGGGHAG EA A +A++GA T LIT   +TIG MSCNP+IGG+GKG+LVRE+D
Sbjct: 85  NEYDVVVIGGGHAGTEACAASARVGAQTLLITQSINTIGVMSCNPSIGGIGKGNLVREVD 144

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-----NLD 118
           AL G+MG  AD +G QF++LN  KG AV GPR Q DRELY+ ++   +         NL 
Sbjct: 145 ALGGVMGLAADQSGCQFKILNQSKGSAVHGPRAQIDRELYQASVHDILAGYSHDQGGNLS 204

Query: 119 VIQGEVAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           + +  V     E    K  ++ +++ D ++I+   VV+TTGTFL GVIHIG   +PAGR+
Sbjct: 205 IREAMVDDLLLEQDGEKERVAGVILSDGTIIKTRKVVITTGTFLGGVIHIGSKMVPAGRI 264

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--K 232
           GD  +  L  +  +F F  GRLKTGTP RLDGK+I +   + Q  D    PFSFM D  K
Sbjct: 265 GDKAATKLSQTLARFGFQLGRLKTGTPPRLDGKSINYQGLQVQEGDVIPTPFSFMNDSVK 324

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSA-IYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
             + Q+ C +TRT  E+HRI++ENI     + SGD K  GPRYCPSIE KI RF  +  H
Sbjct: 325 YADNQLYCYMTRTTEESHRIVLENIDRRPTLDSGDGKGLGPRYCPSIETKIERFEAKT-H 383

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QI+LEPEG NTDV+YP+GIS +LPEE+Q +F++TIPGLE+VN++RPGYA+EYDY++P+EL
Sbjct: 384 QIWLEPEGYNTDVIYPSGISISLPEEVQLRFLKTIPGLEQVNMLRPGYAVEYDYVDPREL 443

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGV 410
            PTLETKKI GL+ AGQINGTTGYEEAAAQG++AGIN++    +    +   R++ Y+GV
Sbjct: 444 RPTLETKKIPGLYFAGQINGTTGYEEAAAQGILAGINASLSLDSNKQQMIVDRSEGYLGV 503

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           M+DDL + GV EPYRMFTSR+EYRISLR  N+D RLT  G +  C+ + R ++F K    
Sbjct: 504 MVDDLVTLGVTEPYRMFTSRSEYRISLRAHNSDQRLTKKGYQFDCVTQDRYQQFLKKENI 563

Query: 471 YNFLRSLLKSLVLTSKN-LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--PDARK 527
            N   + L S   + K  L    I    +GK  + ++ L  P  +++ L  +        
Sbjct: 564 INDTINYLNSTFFSPKEYLEKCGIGSINNGKK-SLFDILKRPHITLETLVPLFGRERLDA 622

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +I  ++ E  Y+ Y  RQ  E +  + EE R IP   DY  +  LS E+++KLS  
Sbjct: 623 IPHHIIPVIESECQYSDYLVRQQTEIERFQKEESRAIPDSLDYYKVGQLSTEMRQKLSET 682

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P  +  AS++ G+TP  +  ++ +I+K+
Sbjct: 683 RPTTIGSASRVPGVTPTGIAAIISFIRKH 711


>gi|294675111|ref|YP_003575727.1| glucose-inhibited division protein A [Prevotella ruminicola 23]
 gi|294474361|gb|ADE83750.1| glucose-inhibited division protein A [Prevotella ruminicola 23]
          Length = 637

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/634 (39%), Positives = 366/634 (57%), Gaps = 23/634 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAGCEAA  +A +GA T L+T   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 4   KYDVIVIGGGHAGCEAACASANMGAKTCLVTMDMNKIAQMSCNPAIGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG V DA  IQFR+LNV KGPAV  PR Q DR  +    +R I   +NLDV Q + 
Sbjct: 64  LGGQMGLVTDATSIQFRMLNVGKGPAVWSPRAQCDRGKFIWEWRRTIDETDNLDVWQDQA 123

Query: 125 AGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
               TE              +     + I   ++V+T GTFL G++HIG+  +P GR+ +
Sbjct: 124 DELLTEPISGSESGAIRAVGVRTIWGTEIYAKSIVITAGTFLNGLMHIGRKMVPGGRIAE 183

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
                   S  +      R+KTGTP R+D +++ ++  E Q  + R   FS+M      +
Sbjct: 184 PAVPHFTESITRHGVTAARMKTGTPVRIDKRSVHFEDLEVQPGETRPYQFSYMNKGGALK 243

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C    TN E H I+   +  S +Y+G I+S GPRYCPSIE K+V F +R+ H +FLE
Sbjct: 244 QLPCWTVNTNAEVHEILKSGLADSPLYNGQIQSIGPRYCPSIETKLVTFPDRDKHPLFLE 303

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG +T+ +Y NG S++LP ++Q + ++ +P    V + RPGYAIEYD+ +P +L  +LE
Sbjct: 304 PEGEDTNEMYLNGFSSSLPMDVQIEALKKMPAFRDVKVYRPGYAIEYDFFDPTQLNHSLE 363

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK------LDCICFSRTDSYIGV 410
           +K I GLF+AGQ+NGTTGYEEA  QG +AGIN+A K+               R ++YIGV
Sbjct: 364 SKIIDGLFMAGQVNGTTGYEEAGGQGTLAGINAALKAGCAGSDTANKQFVLHRDEAYIGV 423

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL +KGV EPYRMFTSRAEYRI LR D+AD RLT    +LG + + R   + +  Q 
Sbjct: 424 LIDDLVTKGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYELGIVKKDRYDWWLQKKQA 483

Query: 471 YNFLRSLLKSLVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK- 527
              + +  ++  +  + ++S   ++            + ++ P  +++NL  + P  ++ 
Sbjct: 484 IEEIEAFCQNFAIKPRLINSALEALGTTPLQFGCKLSDLVNRPQLNLKNLSEVIPSLKEA 543

Query: 528 FS------SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                     + E  +I   Y  Y  R+ + A ++   E   I   F+Y  L  LS E +
Sbjct: 544 LDRPSNRKEEIAEAAEIRMKYKGYIERERLVADKMHRLENIRIKGRFNYEELQGLSTECR 603

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +KL  ++P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 604 QKLQKIQPETLAQASRIPGVSPSDINVLLVLMGR 637


>gi|315638920|ref|ZP_07894092.1| glucose inhibited division protein A [Campylobacter upsaliensis
           JV21]
 gi|315481138|gb|EFU71770.1| glucose inhibited division protein A [Campylobacter upsaliensis
           JV21]
          Length = 616

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/612 (44%), Positives = 371/612 (60%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAG EA+A AAK+G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   YDIIVIGGGHAGIEASAAAAKMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDRYRIIARNKLLQLKNLEISQEQVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I  +    N       ++LTTGTFL G+IHIG+ +I AGR+G+  S  L NS
Sbjct: 122 ELIFKNDEIKGVRTNLNHNYYAKKLILTTGTFLNGLIHIGENQIEAGRVGEMASIKLGNS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K D   GRLKTGT  R+D K+I +   E Q  D    PFSF T   +  Q+ C I RT
Sbjct: 182 LRKLDLKIGRLKTGTCPRVDAKSIDFSVLEIQHGDVEPKPFSFRTKDFSPTQLPCFIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL TH+II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+       
Sbjct: 242 NLNTHQIIKDNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTKEASEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +++I G E   I R GYAIEYDYI+P EL+ +LE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLKSIKGFENAKITRFGYAIEYDYIDPTELYHSLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG + GIN+A      +     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMTGINAALALEDKEPFILRRDEAYIGVLIDDLVMKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G K G + E+  +   K  +      + L +  LT 
Sbjct: 422 MFTSRAEFRLLLREENAIIRLGKYGFKFGLLSEKEFQMIEKSRENIERGLNFLLTKELTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++     +  ++     +  + ++   F +  L  +        +  ++ +  E+ Y
Sbjct: 482 SNENNAFLKELGEEKITSIVSLQKVVARASFDVGKLRKLDSFFENMDAYSLQEILSEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K      IP DFD+ ++  LSNE+ EKL   +P  L  AS+I G+T
Sbjct: 542 YHYITMQKAQVEKMKDLSSLKIPVDFDFKNVSGLSNEVVEKLEKFRPPTLFAASEISGIT 601

Query: 603 PAALNLLLIYIK 614
           PAAL++L IYIK
Sbjct: 602 PAALDILHIYIK 613


>gi|291277040|ref|YP_003516812.1| glucose inhibited division protein A [Helicobacter mustelae 12198]
 gi|290964234|emb|CBG40083.1| glucose inhibited division protein A homolog [Helicobacter mustelae
           12198]
          Length = 632

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/630 (42%), Positives = 366/630 (58%), Gaps = 9/630 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R +DV+VIGGGHAG EA+ ++A++GA T L+T     IG  SCNPAIGGLGKGHLV+E
Sbjct: 1   MMREWDVLVIGGGHAGIEASCISARMGARTHLLTMLIENIGLASCNPAIGGLGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+MGR++D +GIQ+R+LN  KGPAVRG R Q D + YR+  +  +L   NL V Q
Sbjct: 61  VDALGGVMGRLSDKSGIQYRILNASKGPAVRGTRAQIDMDAYRIHARNHVLHTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   I  +            V++TTGTFLRG++HIG+ +   GR G+  +N 
Sbjct: 121 EVVEELLVEDGKIKGVKTNIGKCYFAKKVIITTGTFLRGLVHIGESQSQNGRFGEDSANK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F+ GRLKTGT  R+DG++I +   E    DE    FS+ T      Q+ C 
Sbjct: 181 LSLSLKELGFELGRLKTGTCPRIDGRSIDFSGLEIHHGDEIPPHFSYHTKDFAPSQLPCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II +N   + +++G I+  GPRYCPSIEDK+ RF  +  HQ+FLEP+  +
Sbjct: 241 VTYTNAKTHEIIAQNFHRAPLFTGQIEGVGPRYCPSIEDKVHRFASKERHQLFLEPQTRD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
               Y NG+ST+LP +IQ   I +I GLE   I R GYAIEYDY NP  L+ TLET+ IS
Sbjct: 301 GVEYYVNGLSTSLPYDIQELVIHSIAGLENARITRYGYAIEYDYCNPTALYHTLETRLIS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSA------RKSNKLDCICFSRTDSYIGVMIDDL 415
           GL+ AGQINGTTGYEEAAAQG++AGIN+        +   ++ +   R + YIGVMIDDL
Sbjct: 361 GLYFAGQINGTTGYEEAAAQGIMAGINAVLSLEGNAQKFGMEQLVLRRDEGYIGVMIDDL 420

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            +KG  EPYR+FTSRAEYR+ LR DNA  RL     +LG + E   +   K  ++ +   
Sbjct: 421 VTKGTNEPYRVFTSRAEYRLLLREDNALFRLGKYAYRLGLMEEEDYQMLQKDQEDIDRGM 480

Query: 476 SLLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             L    LT           I         +A        FS +    +    + FS   
Sbjct: 481 EFLTKKTLTPSKETLALLEKIHEAPIVDKCSAVLVAGRDSFSEEKFDVLDEFFKDFSLRA 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             +L+I   Y AY  +Q    ++++   +  IP DF +  +  LS E+ EKL++ +P  L
Sbjct: 541 RSQLRILCKYDAYIEKQKQSVEQMEEMLRIKIPGDFVFEGIAGLSLEVVEKLNLHRPATL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
             A  I G+TPA+L +L +YI  +  K N 
Sbjct: 601 FHAKNISGITPASLEVLHLYIHLHHKKSNA 630


>gi|32475791|ref|NP_868785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopirellula baltica SH 1]
 gi|32446334|emb|CAD76162.1| glucose inhibited division protein A (GIDA) [Rhodopirellula baltica
           SH 1]
          Length = 667

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/603 (43%), Positives = 363/603 (60%), Gaps = 21/603 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL GLMG   DA GIQFR+LN +KGP
Sbjct: 50  KTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDALGGLMGEAIDATGIQFRMLNRRKGP 109

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE----------KNIISSIVM 139
           A+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V    TE             +  + +
Sbjct: 110 AMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVEDLITEPIADGQDRLANQRVIGVRV 169

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
           + +++    TV+LTTGTFL+ ++H GK +   GR G+  +  L  +     F   R KTG
Sbjct: 170 RGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAGEGTTAGLSGALKGMGFTLDRFKTG 229

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKH 259
           TP RL+ +TI +   E+Q  D+   PFS++ D I++ Q+ C I  TN   H +I  N+  
Sbjct: 230 TPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISSPQMACHIAHTNERVHDLIRANLDR 289

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FLEPEG  T  VY NGIST+LP ++Q
Sbjct: 290 APMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFLEPEGRQTCEVYVNGISTSLPRDVQ 349

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
               R IPGLEK  I+R GYA+EYDY  P +L+P LE+K +SGLF AGQINGTTGYEEAA
Sbjct: 350 DAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHLESKSVSGLFFAGQINGTTGYEEAA 409

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
            QGL+AG+N+AR +        SR D+YIGV++DDL + G  EPYRMFTSRAEYR+ LR 
Sbjct: 410 GQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDLVTSGTDEPYRMFTSRAEYRLLLRQ 469

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG 499
           DNAD RLT    +LG I   R++RF + + E      LL+      +            G
Sbjct: 470 DNADRRLTAQADELGLIDAARRERFHRKLAEIERGTELLQQAKFQPET-----------G 518

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
            T     +L  P+ +   +    P+         E+  I+  YA Y  RQ  E  +    
Sbjct: 519 PTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQCSIDIKYAGYIDRQQAEVHKQSRH 578

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ++ IP  FDY  +  L NE KEKL+ ++P NL QA +I G+TPA L L+L +++ N++ 
Sbjct: 579 AEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQAKRISGITPADLALVLAHLENNSLS 638

Query: 620 LNE 622
             +
Sbjct: 639 QTK 641


>gi|57505416|ref|ZP_00371344.1| glucose inhibited division protein A [Campylobacter upsaliensis
           RM3195]
 gi|57016241|gb|EAL53027.1| glucose inhibited division protein A [Campylobacter upsaliensis
           RM3195]
          Length = 616

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/612 (44%), Positives = 372/612 (60%), Gaps = 3/612 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IVIGGGHAG EA+A AAK+G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   YDIIVIGGGHAGIEASAAAAKMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDRYRIIARNKLLQLKNLEISQEQVI 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I  +    N       ++LTTGTFL G+IHIG+ +I AGR+G+  S  L NS
Sbjct: 122 KLIFKNDEIKGVRTNLNHNYYAKKLILTTGTFLNGLIHIGENQIEAGRVGEMASIKLGNS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             K D   GRLKTGT  R+D K+I +   E Q  D    PFSF T   +  Q+ C I RT
Sbjct: 182 LRKLDLKIGRLKTGTCPRVDAKSIDFSVLEIQHGDVEPKPFSFRTKNFSPTQLPCFIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           NL TH+II +N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+       
Sbjct: 242 NLNTHQIIKDNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTKEASEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +++I G E   I R GYAIEYDYI+P EL+ +LE KK+  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLKSIKGFENAKITRFGYAIEYDYIDPTELYHSLELKKVKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN+A      +     R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINAALALEDREPFVLGRDEAYIGVLIDDLVMKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G K G + E+  +   K  +      + L +  LT 
Sbjct: 422 MFTSRAEFRLLLREENAIIRLGKYGFKFGLLSEKEFQMIEKSRENIERGLNFLLTKELTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++     +  ++     +  + ++   F +  L  +        +  ++ +  E+ Y
Sbjct: 482 SNENNAFLKELGEEKITSIVSLQKVVARASFDVGKLRKLDSFFENMDAYSLQEILSEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K      IP DFD+ ++  LSNE+ EKL   +P  L  AS+I G+T
Sbjct: 542 YHYITMQKAQVEKMKDLSSLKIPADFDFKNVSGLSNEVVEKLEKFRPPTLFAASEISGIT 601

Query: 603 PAALNLLLIYIK 614
           PAAL++L IYIK
Sbjct: 602 PAALDILHIYIK 613


>gi|220921038|ref|YP_002496339.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium nodulans ORS 2060]
 gi|219945644|gb|ACL56036.1| glucose inhibited division protein A [Methylobacterium nodulans ORS
           2060]
          Length = 627

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/598 (56%), Positives = 433/598 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAAA AA+ GA TAL+TH+  TIG+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 9   FDVIVVGGGHAGAEAAAAAARTGARTALVTHRRDTIGAMSCNPAIGGLGKGHLVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGR AD AGIQFR+LN +KGPAVRGPRTQADR+LY  A+Q  + S   L +++GE  
Sbjct: 69  DGLMGRAADRAGIQFRLLNRRKGPAVRGPRTQADRKLYARAIQAALGSVPGLTLVEGEAH 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                +  ++ IVM D   + C+ VVLTTGTFLRG+IHIG+   PAGR+G++PS  L  +
Sbjct: 129 DLTVTEGRVTGIVMADGRALPCAAVVLTTGTFLRGLIHIGERTTPAGRVGEAPSLGLAAT 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTPARLDG++I W   E+Q AD+  +PFS MT++IT  QIECG+TRT
Sbjct: 189 LERHGFGLGRLKTGTPARLDGRSIDWAGVERQAADDEPVPFSTMTERITTPQIECGVTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   V
Sbjct: 249 TQSVHDLIRANLHRSPMYSGGITSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDLTV 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGISTALPEE+Q + +R IPG E+  ++RPGYAIEYDY++P+EL PTL+T++I+GLFL
Sbjct: 309 YPNGISTALPEEVQREILRLIPGCERARMLRPGYAIEYDYVDPRELDPTLQTRRIAGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SYIGVMIDDL + GV EPYR
Sbjct: 369 AGQINGTTGYEEAAGQGLVAGLNAARLAGGADLAVFDRAESYIGVMIDDLVTHGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLTP G+ LGC+   R + FA      +  R+ L +L LT 
Sbjct: 429 MFTSRSEYRLSLRIDNADERLTPRGLALGCVSSERARHFAAGRTALSAARARLDALSLTP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   +S  +DG  R+A++ LSYP+ S + L  I P+     + + ERL+ +++YA Y
Sbjct: 489 TEAAQHGLSLNRDGIRRSAFQLLSYPEISWECLAGIWPELGAIPAALAERLRTDATYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +    + +E   +P   DYS +  LSNEL+ KL  ++P  L QA++IEG+TP
Sbjct: 549 LDRQQADIAAFRRDEAVRLPASLDYSRIAGLSNELRAKLEGVRPHTLGQAARIEGVTP 606


>gi|41058565|gb|AAR99265.1| glucose-inhibited division protein A [Candidatus Blochmannia
           schaefferi]
          Length = 602

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/596 (45%), Positives = 365/596 (61%), Gaps = 7/596 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           LITH   T+G MSCNPAIGG+GKGHLV+EIDA+ G+M    D +GIQFR++N  KG AVR
Sbjct: 1   LITHNIDTLGQMSCNPAIGGIGKGHLVKEIDAMGGIMAHAIDRSGIQFRIINNSKGAAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVV 151
             R QAD+ LYR  ++  +   E L ++Q  V      KN +  +++ +    +R  +VV
Sbjct: 61  ATRAQADKILYRQMVRNTLEYMECLLIMQASVEDLIIHKNKVCGVIIPKMGIKLRALSVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTII 210
           LTTGTFL G IHIG      GR GD   +SL      +      +LKTGT  R+  K I 
Sbjct: 121 LTTGTFLNGKIHIGFNNFMGGRAGDIGYSSLLSTRLKELSLRVSQLKTGTSPRVHSKGIN 180

Query: 211 WDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +D    Q +D  +  FSFM     +  QI C IT TN +TH II  N+  S IYSG IK 
Sbjct: 181 FDCLCAQNSDNPVPVFSFMGSVQQHPKQIPCYITHTNNKTHEIIKSNLHRSPIYSGVIKG 240

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
             PRYCPSIEDKI+RF +R+ HQ+FLEPEGL T  +Y NGIST+LP + Q Q I++I GL
Sbjct: 241 VAPRYCPSIEDKIIRFSDRDSHQVFLEPEGLTTPEIYLNGISTSLPFDTQIQIIKSIKGL 300

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E  +IIRPGYA+EYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+
Sbjct: 301 ENAHIIRPGYAVEYDFFDPRDLKLTLESKLISGLFFSGQINGTTGYEEAAAQGLLAGINA 360

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +   +     R  +Y+GV++DDL + G+ EPYRM  SRAEYR+SLR DNAD RLT I
Sbjct: 361 ARFAQNKEGWYPRRDQAYLGVLVDDLCTHGITEPYRMXXSRAEYRLSLREDNADLRLTAI 420

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYE 506
             KLG I E R + F +  +     R  L++  +   ++    ++           +  E
Sbjct: 421 ARKLGLIDESRWEFFCRKQENIERERQRLRNTYIFPHSVDVVQLNSLLNTPLKHRISGEE 480

Query: 507 FLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            L  P+ +   L  +    +    S V  +++++  Y  Y  RQ  E +   F E  L+P
Sbjct: 481 LLKRPEINYIQLLQLQTFSSPILDSQVFCQIELQIKYEGYIRRQQEEIERSIFNENVLLP 540

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            + D+S +  LS E+ EKL+  KP ++ QAS+I G+TPAA++ LL+++KKN +  N
Sbjct: 541 TNMDFSIVSGLSKEVIEKLNDCKPCSVGQASRISGVTPAAISNLLVWLKKNGLLKN 596


>gi|157415452|ref|YP_001482708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047158|sp|A8FMP4|MNMG_CAMJ8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157386416|gb|ABV52731.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 619

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSKNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFEDAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P      +  +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDNYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|283956586|ref|ZP_06374065.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791835|gb|EFC30625.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 619

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 363/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q +  
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IHIG+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHIGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSALEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|57238060|ref|YP_179309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni RM1221]
 gi|73621003|sp|Q5HTS6|MNMG_CAMJR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|57166864|gb|AAW35643.1| glucose inhibited division protein A [Campylobacter jejuni RM1221]
 gi|315058620|gb|ADT72949.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 619

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 366/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K+
Sbjct: 602 PAALDILQIYIKMQKKKV 619


>gi|307564761|ref|ZP_07627289.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella amnii CRIS 21A-A]
 gi|307346483|gb|EFN91792.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella amnii CRIS 21A-A]
          Length = 631

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/628 (41%), Positives = 372/628 (59%), Gaps = 17/628 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAGCEAA  AA +GA T L+T   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 4   QYDVLVIGGGHAGCEAATAAANMGAKTCLLTMDMNKIAQMSCNPAIGGIAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + DA+ IQFR+LN  KGPAV  PR Q DR+ Y    ++ I + ENL + Q + 
Sbjct: 64  LGGYMGLITDASSIQFRMLNRSKGPAVWSPRAQCDRQKYIDNWRKTIDNTENLYIFQDQA 123

Query: 125 AGFNTEK--------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                EK          +  +       +   TV++T GTFL G++HIG  ++  GR+ +
Sbjct: 124 TELLVEKSNTSKEAAQRVIGVKTIWGIDMYARTVIITAGTFLNGLMHIGNKQVEGGRISE 183

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
              ++  +S  ++     R+KTGTP R+D +++ ++ TEKQ  D     FSF   + +  
Sbjct: 184 PAVHNFTDSITRWGITVARMKTGTPVRIDKRSVHFEYTEKQPGDSDYHQFSFFGKQRSLP 243

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C    TN + HRII  ++  + I +G I+S GPRYCPSIE K++ F +++ H +FLE
Sbjct: 244 QMPCWTFNTNEKAHRIIRNSLSEAPILNGQIQSTGPRYCPSIETKLITFPDKSSHPLFLE 303

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG++T+ +Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L P+LE
Sbjct: 304 PEGVDTNEMYLNGFSSSMPWDIQIEAIHQIPALSDAKIYRPGYAIEYDYFDPTQLKPSLE 363

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           +K I GLF AGQ+NGTTGYEEA  QG+VAGIN+A   +        R +SYIGV+IDDLT
Sbjct: 364 SKIIEGLFFAGQVNGTTGYEEAGGQGIVAGINAANLCSNNQPFIMKRDESYIGVLIDDLT 423

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSRAEYRI LR D+AD RLT     LG     R   + +  +    + +
Sbjct: 424 TKGVDEPYRMFTSRAEYRILLRQDDADARLTEKAYTLGIAKRERYDWWLEKKEHILRIEN 483

Query: 477 LLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------ 528
              +  +  + ++S    I       T    + +  P+ +I +L +I P  ++       
Sbjct: 484 FFYNNTVKPEYVNSLLEKIGSSPIKGTTKLIDLIGRPNVTITDLANILPTLKECLETCTN 543

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +IE  +I+  Y  Y  R+ I A+++   E   I   F+Y+ +  LS E ++KL  +
Sbjct: 544 RKEEIIEATEIKMKYKGYIERERIFAEKMHRLENIKIKGHFNYNKIHDLSTECRQKLERI 603

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  L QAS+I G++P  +N+LLI + +
Sbjct: 604 QPETLAQASRIPGVSPNDINVLLILMGR 631


>gi|86150404|ref|ZP_01068630.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839229|gb|EAQ56492.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 619

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDK+ RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKVNRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|224418682|ref|ZP_03656688.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter canadensis MIT 98-5491]
 gi|253826781|ref|ZP_04869666.1| glucose-inhibited division protein A [Helicobacter canadensis MIT
           98-5491]
 gi|313142204|ref|ZP_07804397.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter canadensis MIT 98-5491]
 gi|253510187|gb|EES88846.1| glucose-inhibited division protein A [Helicobacter canadensis MIT
           98-5491]
 gi|313131235|gb|EFR48852.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter canadensis MIT 98-5491]
          Length = 639

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/630 (43%), Positives = 362/630 (57%), Gaps = 13/630 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAG EA+ V+AK G  T L+T     IG+ SCNPA+GGLGKGHLV+E+DA
Sbjct: 2   TYDVIVIGGGHAGIEASIVSAKRGCKTLLLTMLVEQIGAASCNPAVGGLGKGHLVKEVDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG + D +GIQFR LN  KGPAVRG R Q D + Y++  +      +NL+V Q   
Sbjct: 62  LGGVMGYITDKSGIQFRTLNASKGPAVRGTRAQIDMDRYKIIAREICYQTKNLEVSQQIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N I  +      +     V+LTTGTFLRG IHIG+     GR G+ P+  L  
Sbjct: 122 ESLLLENNCIVGVKTNIGKVYHAKKVILTTGTFLRGKIHIGENISNNGRAGEPPAMELGE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK------ITNRQI 238
              +   + GRLKTGT AR+   +I ++  EK + D     FS  T K       +  Q+
Sbjct: 182 CLRELGLEVGRLKTGTCARIKASSINFEALEKHYGDMPPPFFSKQTQKELGNKEFSPTQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II  N   + ++ G I+  GPRYCPSIEDK+ RF ++  HQ+FLEP+
Sbjct: 242 PCYVTYTNAKTHEIIRNNFHRAPMFIGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEPQ 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L  +  Y NG++T+LP ++Q + I +I GLE   I+R GYAIEYDYINP EL  TLETK
Sbjct: 302 TLEANEYYINGLTTSLPFDVQEEMIHSIEGLENAEIVRYGYAIEYDYINPTELKHTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI  L+ AGQINGTTGYEEAAAQG+ AGIN++      + I   R ++YIGVMIDDL +K
Sbjct: 362 KIKNLYCAGQINGTTGYEEAAAQGIFAGINASLSVQGKEEITLKRNEAYIGVMIDDLVTK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMF+SRAEYR+ LR  NA  RL  +  KLG + E   +   +   +       L
Sbjct: 422 GTKEPYRMFSSRAEYRLLLREGNAIFRLGELAYKLGLMQEEEYQALLQDKSDIQKGLQWL 481

Query: 479 KSLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL 531
            S  LT      T   SI  ++          +    F +  L  I         KFS  
Sbjct: 482 DSTALTPTQEILTFLDSIQEEKISDKTIWRTIVGRRSFDLPKLLKIGEIIPTPFEKFSHR 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            +E + +E+ YA Y  +Q      +       IP DF + ++P LS E+ EKL    P +
Sbjct: 542 ALEEILVEAKYANYIQKQQSLIDNMDKMLSIKIPADFSFDTIPGLSLEVVEKLKKFTPKS 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L +AS+I G+TPA+L +L +YI     K +
Sbjct: 602 LFEASEISGVTPASLEVLQLYIHLYHKKKS 631


>gi|281207409|gb|EFA81592.1| Glucose inhibited division protein [Polysphondylium pallidum PN500]
          Length = 721

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/624 (47%), Positives = 405/624 (64%), Gaps = 11/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EA A A+++GAST LIT   +TIG MSCNP+IGG+GKG+LVRE+DA
Sbjct: 86  DFDVVVIGGGHAGTEACAAASRVGASTLLITQSINTIGVMSCNPSIGGIGKGNLVREVDA 145

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG  ADA+G QF++LN  KG AV GPR Q DR+LY+  +   +  Q+NL++ +  V
Sbjct: 146 LGGVMGLAADASGCQFKILNQSKGSAVHGPRAQIDRDLYQQEIHTLLAGQDNLNIREAMV 205

Query: 125 AG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                +   N +  +++ D S+I+   VV+TTGTFL GVIH+G   + AGR+GD  +  L
Sbjct: 206 EDMLLDDTDNSVVGVLLNDGSVIKTKKVVITTGTFLGGVIHVGNKTVLAGRVGDRAATKL 265

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIEC 240
             +  +F F  GRLKTGTP RLDGK+I +   E Q  DE+  PFSF+ D  K  +RQ++C
Sbjct: 266 SQTLARFGFALGRLKTGTPPRLDGKSIDYTGLEIQNGDEKPTPFSFLNDTVKYRDRQLQC 325

Query: 241 GITRTNLETHRIIMENIKHSA--IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            +TRT  ++H+II++N+          D K  GPRYCPSIE KI RF  R  HQ++LEPE
Sbjct: 326 FMTRTTEQSHQIILDNLDTRPALESGVDGKGLGPRYCPSIETKIERFQGRT-HQVWLEPE 384

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NTDV+YPNGIS +LPE++Q QF++TIPGLE V ++RPGYA+EYDY++P+EL  TLETK
Sbjct: 385 GYNTDVIYPNGISISLPEDVQLQFLKTIPGLENVVMLRPGYAVEYDYVDPRELRSTLETK 444

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVMIDDLTS 417
           K+ GL+ AGQINGTTGYEEAAAQG+VAGIN+A   +K    +   R++ YIGV+IDDL +
Sbjct: 445 KVKGLYFAGQINGTTGYEEAAAQGIVAGINAALSLDKSRSPMIVDRSEGYIGVLIDDLVT 504

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            GV EPYRMFTSR+EYRISLR  N+D RLT  G +   + + R  R+A+     N   + 
Sbjct: 505 LGVTEPYRMFTSRSEYRISLRAHNSDQRLTQKGFQHSSVTKERLDRYAQKESIINETMNY 564

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIER 535
           LK                +  G  ++ +E L  P  S+  L  +  +       SL++  
Sbjct: 565 LKETKYQPNEYLEKC-GIENIGSKKSIFEILKRPHTSLALLKPLIDENVYSSIPSLIVPV 623

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y+ Y  RQ  E    K EE R IP+  +Y  +  LS E+K+KLS  +P  L  A
Sbjct: 624 IESECQYSDYLVRQQAEIDRFKREESREIPEAINYWEIGQLSTEIKQKLSEARPPTLGSA 683

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
           S++ G+TP+ +  +L YI+KN  +
Sbjct: 684 SRVPGVTPSGILAILSYIRKNHKQ 707


>gi|86151119|ref|ZP_01069335.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124654|ref|YP_004066658.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842289|gb|EAQ59535.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018376|gb|ADT66469.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 619

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|298293755|ref|YP_003695694.1| glucose inhibited division protein A [Starkeya novella DSM 506]
 gi|296930266|gb|ADH91075.1| glucose inhibited division protein A [Starkeya novella DSM 506]
          Length = 618

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/599 (57%), Positives = 431/599 (71%), Gaps = 1/599 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV+VIGGGHAG EAAA AA+LGA TAL+TH  +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SFDVVVIGGGHAGTEAAAAAARLGARTALVTHAFATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVAD  GIQFRVLN +KGPAVRGPR QADR+LY  AMQR I SQ NL V++GE 
Sbjct: 67  LDGLMGRVADQGGIQFRVLNRRKGPAVRGPRAQADRKLYAQAMQRAIDSQPNLSVLEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   ++ + + D   I    VV+TTGTFL G+IHIG  ++PAGRMG+ P+  L  
Sbjct: 127 DTLLMQDGRVAGLKLADGRSIGAGAVVITTGTFLNGLIHIGDRQMPAGRMGEQPARGLSG 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S        GRLKTGTP RLDG+TI W   E Q  D    PFS +TD ITN Q++CGITR
Sbjct: 187 SLTAIGLTLGRLKTGTPPRLDGRTIDWAGLEMQDGDSPPEPFSTLTDAITNPQVKCGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  NI  SA+YSG+I+S GPRYCPSIEDKIVRFGER GHQIFLEPEGL+   
Sbjct: 247 TTPATHAVIRANIARSAMYSGNIQSVGPRYCPSIEDKIVRFGEREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LPE++Q   + TIPGLE+V ++RPGYAIEYD+++P+EL PTLET+K  GLF
Sbjct: 307 VYPNGISTSLPEDVQLALLATIPGLERVAMLRPGYAIEYDHVDPRELEPTLETRKARGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGLVAG+N+AR++  ++   F R ++YIGVMIDDL ++GV EPY
Sbjct: 367 LAGQINGTTGYEEAAAQGLVAGLNAARRAAGMEGATFDRAEAYIGVMIDDLVTRGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLT  G  LG IG  R+ R+A        +R   +S+ LT
Sbjct: 427 RMFTSRAEYRLSLRADNADQRLTARGDDLGLIGSERRARYAGKSTALARVREWSRSVALT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                   ++  +DG+ R+A++ LSYP     ++  I P+A    + + E+++I++ YA 
Sbjct: 487 PAEGDRHGLTLNRDGQRRSAFDLLSYPHVGWADICRIWPEASGEDARIGEQVEIDAKYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P+  DY SL  +SNE+K KL  ++P  + QAS+I+GMTP
Sbjct: 547 YLHRQEADIASFRRDEAAQLPQ-VDYRSLAGISNEIKAKLESIRPRTIGQASRIDGMTP 604


>gi|296126685|ref|YP_003633937.1| glucose inhibited division protein A [Brachyspira murdochii DSM
           12563]
 gi|296018501|gb|ADG71738.1| glucose inhibited division protein A [Brachyspira murdochii DSM
           12563]
          Length = 616

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/613 (44%), Positives = 383/613 (62%), Gaps = 3/613 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG +T +I+    TIG MSCNP+IGG+ KG +V+E
Sbjct: 1   MNNKYDVIVVGAGHAGIEAALSSARLGMNTLIISINLDTIGQMSCNPSIGGVAKGTIVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +Q NL + Q
Sbjct: 61  IDALGGEMGLLIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEAAKTLYAQNNLTLHQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N++  +  +      C  V+LTTGTFL G+IHIG  +  AGR+G+ P+  
Sbjct: 121 DIVTEIVVENNVLKGLKTERGREYECDAVILTTGTFLNGLIHIGPYQKQAGRIGELPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++      + GRLKTGTPAR+D  +I +D  E Q  DE ++PFSF+ +KI   Q  C 
Sbjct: 181 LSDNLRALGLEVGRLKTGTPARVDYNSINFDILEMQKGDEEIVPFSFLDEKIDIVQEPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+   H++I +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E   
Sbjct: 241 ITYTDTNIHKLIQDNIHLSPMYSGAITGIGPRYCPSIEDKVVRFADKPRHQLHLERESYR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY NG S++LPEE+Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI 
Sbjct: 301 TNEVYINGFSSSLPEEVQIKMIRSLKGLEEVKILKPAYAVEYDYVNPIELKPTLETKKIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGT+GYEEAA QGL+AGIN+A K  K       R+D YIGV+IDDLT+KG  
Sbjct: 361 GLFLAGQINGTSGYEEAACQGLMAGINAALKIKKEAPFILKRSDGYIGVLIDDLTAKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R  +     ++   L   L   
Sbjct: 421 EPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLDKVRDKKRKTQILVEYLNKR 480

Query: 482 VLTSKNLSSTSISFKQDG-KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            LT K       + +    ++ T    +  P+  I  L S+  D   ++  V+   +I  
Sbjct: 481 TLTQKEAEDLGFTKEAKEYRSMTLSSIIKRPECGIDMLVSLIDD--NYNKDVLNNAEIAI 538

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  R + E ++I+  E  LIP+DFDYS+L ++  +   KL   KP+N+ QA +I  
Sbjct: 539 KYEGYIARYLNEIRDIEKYENMLIPEDFDYSTLKSVKIDAINKLKQYKPYNISQALRIPE 598

Query: 601 MTPAALNLLLIYI 613
           +  + +++L++ +
Sbjct: 599 VDKSVVHILILAL 611


>gi|58698629|ref|ZP_00373524.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630672|ref|YP_002727463.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia sp. wRi]
 gi|254811524|sp|C0R430|MNMG_WOLWR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58534851|gb|EAL58955.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592653|gb|ACN95672.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia sp. wRi]
          Length = 644

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/618 (48%), Positives = 393/618 (63%), Gaps = 25/618 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           +LG +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN 
Sbjct: 24  RLGTNTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDRASIHSVILNS 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQ 140
            +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++  
Sbjct: 84  SRGAAVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITS 143

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
               I    VVLTTGTFL+GVIHIG+   P+GRMGD P+  L N+  K+DF  GRL+TGT
Sbjct: 144 SGEHILTGKVVLTTGTFLQGVIHIGEQTTPSGRMGDKPAVELANTLNKYDFRLGRLRTGT 203

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
           P RLD  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  S
Sbjct: 204 PPRLDRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRS 263

Query: 261 AI-YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           A  Y  D+    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q
Sbjct: 264 ASSYLSDV--VAPRYCPSIEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQ 321

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
            + I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA
Sbjct: 322 REMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAA 381

Query: 380 AQGLVAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
            QG++AGIN+A     K +     RTDSYIGVMIDDL +KGV+EPYR+FTSRAEYR+++R
Sbjct: 382 GQGIIAGINAALSAFEKKESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFTSRAEYRLAIR 441

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT  G  +  +   R       ++    L   L SL +T + L S  I    D
Sbjct: 442 SDNADRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYD 501

Query: 499 GKTRTAYEFLSYPDFSIQNLFSICPDARKFSS----------------LVIERLQIESSY 542
           G  +TA + LSYP+     L  I P+    +                  + E ++IE+ Y
Sbjct: 502 GIRKTALDLLSYPNIDWNKLQEIWPELSSVTRWNDKMGHTKADNRAKNEICEAVEIEAKY 561

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  + K ++ E    IP DF+YS +  LS+E+ EKL  +KP  +  A +I+G+T
Sbjct: 562 KPYLIRQEADMKFLREEINTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGIT 621

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAA+  +L+Y++    K+
Sbjct: 622 PAAIVSILVYLRNRKTKV 639


>gi|159904343|ref|YP_001551687.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889519|gb|ABX09733.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9211]
          Length = 657

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/635 (44%), Positives = 376/635 (59%), Gaps = 15/635 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   TESFDVIVVGGGHAGCEAAITTAKLGFSTALFTLNLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++GR+AD   IQ R+LN  +GPAV   R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGVIGRLADTTAIQKRILNASRGPAVWALRAQTDKRQYVKQMLQLLQNTPNLHLREA 127

Query: 123 EVAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            V G   + N            I  I     S+     V+LTTGTFLRG I IG   + A
Sbjct: 128 MVTGLEVDPNNSKVSNENHTGWIKGIKTYFGSIYLAKAVILTTGTFLRGRIWIGNQSMAA 187

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-T 230
           GR G+ P+  L  +  +  F T RLKTGTPAR+D ++I     E+Q +D     FSF  T
Sbjct: 188 GRAGEQPAEGLTEALQELGFQTDRLKTGTPARIDRRSINLHALEEQKSDAANRFFSFDPT 247

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
              + +QI C ITRT   TH+++ +N++H+ IY G I S GPRYCPSIEDKIVRF ++  
Sbjct: 248 AWKSGKQISCHITRTTTATHQLVKDNLQHTPIYGGFIDSKGPRYCPSIEDKIVRFSDKES 307

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLEPEGL+T  +Y  G ST LPE++Q + ++T+PGLEK  ++RP YA+EYDYI   +
Sbjct: 308 HQIFLEPEGLDTPEIYVQGFSTGLPEKLQLKLLQTLPGLEKCIMLRPAYAVEYDYIPATQ 367

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L P+LETKKI GLF AGQ+NGTTGYEEAAAQGLVAGIN+ R   + + + F R +SYIG 
Sbjct: 368 LLPSLETKKIKGLFSAGQLNGTTGYEEAAAQGLVAGINATRLIQQKEALHFPREESYIGT 427

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL  K + EPYR+ TSR+EYR+ LR DNAD RLTP+G KLG I +RR   F      
Sbjct: 428 MIDDLVHKDLREPYRVLTSRSEYRLLLRGDNADRRLTPLGHKLGLIDQRRWDIFKAKHNA 487

Query: 471 YNFLRSLLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
            N  +  L++  + + +   L     +      + +    L  P   +  L         
Sbjct: 488 LNNEKIRLETQRVKASDSIALELEKETGAAIKGSISLANLLRRPGTHMSTLLRYQLINND 547

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               V E ++I+  Y+ Y  RQ  +  +I+ + K+ IP + +Y S+  LS E +EKL+I 
Sbjct: 548 IPLDVREGVEIDIKYSGYLERQKAQVDQIQKQSKKPIPTEINYESITTLSKEAREKLTIR 607

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           +P N  +A  I G++ A L  LL+++K    K  E
Sbjct: 608 RPKNFGEAGLIPGVSKADLTALLVWLKIQNRKQLE 642


>gi|159045995|ref|YP_001534789.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dinoroseobacter shibae DFL 12]
 gi|189039340|sp|A8LPC3|MNMG_DINSH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157913755|gb|ABV95188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Dinoroseobacter shibae DFL 12]
          Length = 619

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/603 (53%), Positives = 417/603 (69%), Gaps = 3/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +++DVIVIGGGHAG EAAA AA+LG   ALIT + S IG MSCNPAIGGLGKGHLVR
Sbjct: 1   MKQQAFDVIVIGGGHAGTEAAAAAARLGVQVALITLERSGIGVMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DG+MGRVAD AGIQFR+LN +KGPAV+GPR+Q+DR++YR  M  E+ S  NL ++
Sbjct: 61  EIDAMDGVMGRVADKAGIQFRLLNRRKGPAVQGPRSQSDRDVYRSEMLAEMESLPNLRIL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +GEVA   T    I  + + D S +    VV+TTGTFLRG+IHIG      GRMG +PS 
Sbjct: 121 EGEVADLITSGTRIEGVCLADGSEVTARAVVVTTGTFLRGIIHIGNRSFQGGRMGAAPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L   F  F    GRLKTGTP RLD ++I WDK E Q  DE    FSF++     RQ+ C
Sbjct: 181 RLAERFDSFGLPLGRLKTGTPPRLDKRSIAWDKLEPQPGDEDPTLFSFLSAGPHLRQVHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II +N+  SA+Y G I+  GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 241 AVTHTNERTHEIIRKNLSRSAMYGGSIEGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LPE++Q  ++R+I GLE   I +PGYAIEYDY++P+ L   L  K  
Sbjct: 301 DSTTIYPNGISTSLPEDVQEAYVRSISGLENAKITQPGYAIEYDYVDPRALDAALRVKGF 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQGLVAG+N+A +         SR  SYIGVMIDDL ++GV
Sbjct: 361 DGLYLAGQINGTTGYEEAAAQGLVAGLNAALEGKGK--FLPSRMTSYIGVMIDDLITQGV 418

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+SLR DNAD RLTP G+ LGC+G+ R+ +F K +   +     LKS
Sbjct: 419 AEPYRMFTSRAEYRLSLRCDNADQRLTPEGLVLGCVGKERRIKFEKKMGLLDETLKKLKS 478

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +T K  +   I   +DG+ R+  + LS  + S ++L +  P+ +  S+ + ++ +IE+
Sbjct: 479 FEVTPKQANEAGIRVNEDGRRRSGLDLLSLSNVSYESLAATWPELQA-STEIAKQAKIEA 537

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +YA Y  RQ  +   +K +E+   P  FD+S L  LSNELK KL+ ++P  L QA++IEG
Sbjct: 538 TYANYIERQQRDVMALKKDEEIEFPPRFDFSGLSGLSNELKSKLTAVRPSTLGQAARIEG 597

Query: 601 MTP 603
           MTP
Sbjct: 598 MTP 600


>gi|313204555|ref|YP_004043212.1| glucose inhibited division protein a [Paludibacter propionicigenes
           WB4]
 gi|312443871|gb|ADQ80227.1| glucose inhibited division protein A [Paludibacter propionicigenes
           WB4]
          Length = 624

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/624 (40%), Positives = 368/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAG EAA  AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGNEAACAAANMGSKTLLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D + IQFR+LN  KGPA+  PR+Q+DR  +       I +  NL V Q
Sbjct: 61  IDALGGQMGIITDRSAIQFRMLNRSKGPAMWSPRSQSDRHQFIQHWISTITNIPNLYVWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ ++       R  +VVLT GTFL G++H GK ++  GR+ +  S  
Sbjct: 121 DTVKELVIENGEVTGLISALGVHFRAKSVVLTAGTFLGGLMHFGKNQLVGGRISEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           +        F T R+KTGTP R+DG++I + K  +Q  +     FSF+ + K   +Q  C
Sbjct: 181 ITEQLKSIGFTTDRMKTGTPCRIDGRSIDFSKMSEQKGENDFHKFSFLEEAKRELKQESC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH  + + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG+
Sbjct: 241 WITNTNQTTHDELRKGLADSPLFNGQIQSIGPRYCPSIETKIVTFADKISHQLFLEPEGV 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++   Y NG S++LP  +Q   I TI GLE   + RPGYAIEYD+ +P +L  TLETK+I
Sbjct: 301 DSQEYYLNGFSSSLPLRVQIDAIHTIQGLENAQLFRPGYAIEYDFFDPTQLKHTLETKRI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+            +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCMGGKEFTLARNEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR D+AD RLT  G ++G     R ++    I++ N L   +K+
Sbjct: 421 DEPYRMFTSRAEYRLILRQDDADVRLTGKGYEIGLATNNRFQQLNTKIEKQNILTEFIKN 480

Query: 481 LVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICPDARK-------FSSL 531
             +    ++    S    +        + +  P  SI++L    P  ++           
Sbjct: 481 YSIKPAFINEFLASRNSSELKHGCKLSDLVLRPQLSIEDLSEAIPALKEKIEAIGSRKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E  ++   Y  Y  R+ + A +++  E   I    DY+++ +LS E ++KLS + P  
Sbjct: 541 IVEATEVLLKYEGYIEREKLIADKLQRLEHINIRGRIDYNTIQSLSTEARQKLSKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 IGQASRIPGISPSDVNILLVLLGR 624


>gi|254526346|ref|ZP_05138398.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537770|gb|EEE40223.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
          Length = 655

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/637 (42%), Positives = 375/637 (58%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 EVAGFN-------------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +               K  I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKTEQVGLNSKKVVKKRIKGVKTFFGSYYTAKSVIITAGTFLEGKIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D K+II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKKSIIFDELDTQPSTAADKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTSKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 308 ESHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSKCKMLRPAYAVEYEYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWSAYEEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I      K   + T  E L  P+F   +L       
Sbjct: 488 KLLEEEKLRLNNTRLKNTDEISKKIELDTGSKIKGSTTLKELLKRPNFHYLDLIKYNLAK 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGYSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +   +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREINKEK 644


>gi|189501725|ref|YP_001957442.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497166|gb|ACE05713.1| hypothetical protein Aasi_0274 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 621

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/597 (43%), Positives = 355/597 (59%), Gaps = 7/597 (1%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G+   LIT    TI  MSCNPA+GG+ KG ++REIDAL GL G + D + IQFR+LN 
Sbjct: 25  RMGSHVLLITMNMGTIAQMSCNPAMGGIAKGQIIREIDALGGLSGIITDKSMIQFRMLNK 84

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPA+  PR Q+DR  +    +  +    NLD  Q  V     E   +  +       I
Sbjct: 85  SKGPAMWSPRAQSDRMRFAEEWRLALEQINNLDFWQDLVKEILIENGRVIGVKTAMGLSI 144

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           R   V+LT GTFL G IHIG+ +   GR G+  +  L        F++GR+KTGTP R+D
Sbjct: 145 RAKAVILTNGTFLNGAIHIGEKQFKGGRTGEKSATGLTEQLTNLGFESGRMKTGTPPRVD 204

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYS 264
            +T+ +   E+Q  DE    FSF+   I   +Q  C +T TN   H ++ +    S +++
Sbjct: 205 SRTLDYTCMEEQPGDENPSKFSFLDSTIPLTKQRSCHVTYTNKRVHELLEKGFDQSPMFN 264

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             I+  GPRYCPSIEDKI RF ER  HQIF+EPEG NT  VY NG S++LPE+IQ+  +R
Sbjct: 265 ARIQGKGPRYCPSIEDKITRFAERERHQIFVEPEGWNTIEVYVNGFSSSLPEDIQYHALR 324

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
            IPG E   + RPGYAIEYDY    +L  TLET+ IS L+ AGQINGTTGYEEAA QGLV
Sbjct: 325 AIPGFENAKMFRPGYAIEYDYFPATQLNDTLETRLISNLYFAGQINGTTGYEEAACQGLV 384

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AGIN+ R  N+L  + FSR+++YIGV+IDDL +K   EPYRMFTSRAE+RI LR DNAD 
Sbjct: 385 AGINAHRNINELGKVVFSRSEAYIGVLIDDLITKSSDEPYRMFTSRAEFRILLRQDNADL 444

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI--SFKQDGKTR 502
           RLT +G K+G   E+R     K     N L   LK L L  ++ +++ I        + +
Sbjct: 445 RLTELGYKIGLADEKRMSEVQKKQLHINQLIDTLKELKLNPESTNNSFIESGIVPIRERQ 504

Query: 503 TAYEFLSYPDFSIQNL----FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
           T Y+ L  P+ +I  L     S+      +   VIE+ +I++ Y  Y  ++    ++ K 
Sbjct: 505 TIYQLLKRPELTISILKKYHESLSNALENYGIEVIEQAEIQAKYEMYIQKEKELVEKFKR 564

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            E   I   FDY+ + ALS E +EKL   KP  + QASKI G++PA + +L++Y+ +
Sbjct: 565 LENCHISPGFDYTQIKALSTEGREKLKKHKPTTIGQASKISGVSPADIAILMVYMGR 621


>gi|77416429|sp|Q7ULV7|MNMG_RHOBA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 653

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/603 (43%), Positives = 363/603 (60%), Gaps = 21/603 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TAL+T    T+G MSCNPAIGG+ KG +VRE+DAL GLMG   DA GIQFR+LN +KGP
Sbjct: 36  KTALLTTNLDTVGQMSCNPAIGGVAKGQIVREVDALGGLMGEAIDATGIQFRMLNRRKGP 95

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE----------KNIISSIVM 139
           A+  PR QAD++ Y+  ++  I +Q+NLD+ Q  V    TE             +  + +
Sbjct: 96  AMHSPRAQADKKAYQNFIKYRIETQDNLDLRQETVEDLITEPIADGQDRLANQRVIGVRV 155

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
           + +++    TV+LTTGTFL+ ++H GK +   GR G+  +  L  +     F   R KTG
Sbjct: 156 RGDAVYHAPTVILTTGTFLQAIMHTGKSQSAGGRAGEGTTAGLSGALKGMGFTLDRFKTG 215

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKH 259
           TP RL+ +TI +   E+Q  D+   PFS++ D I++ Q+ C I  TN   H +I  N+  
Sbjct: 216 TPPRLNARTIDYSGLEEQPGDDDPQPFSYLNDAISSPQMACHIAHTNERVHDLIRANLDR 275

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           + +YSG I S GPRYCPSIEDK+VRF +++ HQ+FLEPEG  T  VY NGIST+LP ++Q
Sbjct: 276 APMYSGQIDSRGPRYCPSIEDKVVRFADKSSHQLFLEPEGRQTCEVYVNGISTSLPRDVQ 335

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
               R IPGLEK  I+R GYA+EYDY  P +L+P LE+K +SGLF AGQINGTTGYEEAA
Sbjct: 336 DAMFRCIPGLEKAAIMRYGYAVEYDYCPPTQLWPHLESKSVSGLFFAGQINGTTGYEEAA 395

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
            QGL+AG+N+AR +        SR D+YIGV++DDL + G  EPYRMFTSRAEYR+ LR 
Sbjct: 396 GQGLIAGLNAARTAASKTPWVPSRQDAYIGVLVDDLVTSGTDEPYRMFTSRAEYRLLLRQ 455

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG 499
           DNAD RLT    +LG I   R++RF + + E      LL+      +            G
Sbjct: 456 DNADRRLTAQADELGLIDAARRERFHRKLAEIERGTELLQQAKFQPET-----------G 504

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
            T     +L  P+ +   +    P+         E+  I+  YA Y  RQ  E  +    
Sbjct: 505 PTVRGDVYLRRPEVTWNVIAEQVPELAGIGREAAEQCSIDIKYAGYIDRQQAEVHKQSRH 564

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            ++ IP  FDY  +  L NE KEKL+ ++P NL QA +I G+TPA L L+L +++ N++ 
Sbjct: 565 AEKSIPVSFDYDKIGPLRNEAKEKLTKVRPLNLGQAKRISGITPADLALVLAHLENNSLS 624

Query: 620 LNE 622
             +
Sbjct: 625 QTK 627


>gi|303280357|ref|XP_003059471.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459307|gb|EEH56603.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 731

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/626 (40%), Positives = 360/626 (57%), Gaps = 11/626 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA  +A+ GA T L+T     +    CNPA+GG  K  LV E+DA
Sbjct: 76  DYDVIVVGAGHAGCEAALASARKGARTLLLTLSLDRVAWQPCNPAVGGPAKSQLVHEVDA 135

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G +GR+AD   +Q RVLN  +GPAV   R Q D+  Y   M+  +  +  + + +G  
Sbjct: 136 LGGEIGRIADKTYLQKRVLNASRGPAVWALRAQTDKWEYSREMRARLEREPLIAIREGMA 195

Query: 125 AGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + + +  +            VVLTTGTF+ G I +G+  + AGR G++PS  L 
Sbjct: 196 TELVLGDNDDVKGVKTFFGMTFTSRAVVLTTGTFMSGQIWVGRKTLAAGRAGEAPSVGLT 255

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
              +   F+T RLKTGTPAR+D ++I +   E+Q  DE +  F+F  +  +   Q++C +
Sbjct: 256 ECLVDLGFETDRLKTGTPARVDSRSIQYRGLERQPGDEDVRWFTFDENAHVARPQMDCHL 315

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TRT  ETH +I EN+  +  Y G + + GPRYCPSIEDKIVRF E++ HQIFLEPEG + 
Sbjct: 316 TRTTAETHALIRENLHETPTYGGWVGAKGPRYCPSIEDKIVRFAEKDSHQIFLEPEGRDV 375

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY  G ST LPE +Q   +RT+PGLE   ++RP YA+EYD++   +  PTLETKKISG
Sbjct: 376 PEVYVQGFSTGLPERLQLALLRTLPGLEACKMLRPAYAVEYDFLPAYQCGPTLETKKISG 435

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF +GQINGTTGYEEAA QGL+AG N+A  +     +   R  SY+G +IDDL +K + E
Sbjct: 436 LFFSGQINGTTGYEEAAGQGLLAGANAAAVALATSALILPRESSYLGTLIDDLCTKDLRE 495

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR+EYR+ LR DNAD RLTP+G + G + + R + F +         + L +  
Sbjct: 496 PYRMLTSRSEYRLVLRSDNADARLTPLGRECGLVDDDRWRFFTEKRDAMERETTRLTTTR 555

Query: 483 LTSKNLSSTSI-------SFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDARKFSSLVI 533
           + S    +  +       + K   ++ T  E L  P  S           D    S    
Sbjct: 556 VKSDTPLAQRVIDISGANAAKPSRQSFTLRELLRRPRVSHATFAEYGHGGDENSLSRWAA 615

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E ++ E  Y  +  RQ ++  ++  +  + IPKD  Y+ +  L  E +EKL+ ++P  + 
Sbjct: 616 EAVETEVKYEGFIKRQEVQVAKVAGKMNKAIPKDVCYADVTTLRMEAREKLAKMRPTTIG 675

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVK 619
           QAS+I G+TPA +  LL++++    +
Sbjct: 676 QASRIGGVTPADVASLLVHLEVGARR 701


>gi|121613192|ref|YP_001000863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005775|ref|ZP_02271533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|218562800|ref|YP_002344579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|21263699|sp|Q9PNA7|MNMG_CAMJE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|166222922|sp|A1W0H2|MNMG_CAMJJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|87249308|gb|EAQ72269.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360506|emb|CAL35303.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315927247|gb|EFV06592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 619

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVEGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|88596189|ref|ZP_01099426.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|88191030|gb|EAQ95002.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 84-25]
          Length = 619

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P      +  +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFEIMDNYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|157414281|ref|YP_001485147.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9215]
 gi|166989738|sp|A8G7I0|MNMG_PROM2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157388856|gb|ABV51561.1| Glucose inhibited division protein A [Prochlorococcus marinus str.
           MIT 9215]
          Length = 655

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/637 (42%), Positives = 375/637 (58%), Gaps = 17/637 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N S+D+IVIGGGHAGCEAA   AKLG STAL T     I    CNPA+GG  K  LV E+
Sbjct: 8   NESFDIIVIGGGHAGCEAAITTAKLGFSTALFTINLDRIAWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++AD   IQ R+LN  +GPAV   R Q D+  Y   M   + + +NL + + 
Sbjct: 68  DALGGIIGKLADETAIQKRILNASRGPAVWALRAQTDKREYSKRMIEILQNTDNLSLKEA 127

Query: 123 EVAGFN-------------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +   +               K  I  +     S     +V++T GTFL G I IG   +
Sbjct: 128 MITELDIAKSEQVGLNSKKVVKKRIKGVKTFFGSYYSAKSVIITAGTFLEGKIWIGNKSM 187

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G+  +  L  +  +    T RLKTGTPAR+D K+II+D+ + Q +      FSF 
Sbjct: 188 SAGRSGEQAAQGLTQNLHEIGIKTERLKTGTPARVDKKSIIFDELDTQPSTAAGKYFSFD 247

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            D K    Q+ C ITRT  +TH++I +N+  + IY G I S GPRYCPSIEDKIV+F ++
Sbjct: 248 PDIKNNMPQVSCHITRTTSKTHQLIRDNLHLTPIYGGFIDSKGPRYCPSIEDKIVKFADK 307

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQIFLEPEG+NT  +Y  G ST LPE IQ + +RT+PGL K  ++RP YA+EY+YI  
Sbjct: 308 KSHQIFLEPEGINTPEIYVQGFSTGLPENIQLELLRTLPGLSKCKMLRPAYAVEYEYIPA 367

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +L  +LETK+I  LF AGQINGTTGYEEAAAQGLVAG+N+ RK NK D I F+R  SYI
Sbjct: 368 TQLQTSLETKEIEYLFSAGQINGTTGYEEAAAQGLVAGVNATRKLNKKDPIIFTRESSYI 427

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G MI+DL +K + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I E+R   + + +
Sbjct: 428 GTMINDLITKDLKEPYRVLTSRSEYRLTLRGDNADRRLTPLGYQIGLIDEKRWSAYEEKM 487

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK---TRTAYEFLSYPDFSIQNLFSICPDA 525
           +     +  L +  L + +  S  I      K   + T  E L  P+F   +L       
Sbjct: 488 KLLEEEKLRLNNTRLKNTDEISKKIELDTGSKIKGSTTLKELLKRPNFHYLDLIKYNLAK 547

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           +     + E ++I+  Y  Y  RQ    ++I  +  + +P++ +Y  +  LS E +E L+
Sbjct: 548 KNLGYSIQEGVEIDIKYEGYLKRQKNNIEQINRQSCKSLPQEINYEKIDTLSLEARENLN 607

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +KP N   ASKI G++ A L  LL+++K   +   +
Sbjct: 608 KIKPKNFGDASKIPGVSKADLTALLVWLKIREINKEK 644


>gi|300727531|ref|ZP_07060922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bryantii B14]
 gi|299775234|gb|EFI71835.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella bryantii B14]
          Length = 623

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/623 (39%), Positives = 365/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIVIGGGHAGCEAAA +A +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFNYDVIVIGGGHAGCEAAAASANMGAKTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGQMGLVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTVLDNTPNLKIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      E      +       +   ++++T GTFL G++HIG+  +  GR  +   ++
Sbjct: 121 DQADKLLVENGEAIGVHTIWGVELYAKSIIVTAGTFLNGLMHIGRKMVEGGRCAEPAVHN 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++   + R+KTGTP R+D +++ ++  + Q  D     FS+M      +Q+ C 
Sbjct: 181 FTESITRWGITSARMKTGTPVRIDKRSVHFEDMDVQDGDSDFHQFSYMGPHRVLQQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T TN E H  + E +  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG +
Sbjct: 241 TTYTNKEVHDTLKEGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGED 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P ++Q   IR I     V I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPMDVQLNAIRKIRAFRDVEIYRPGYAIEYDYFDPTQLKHSLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG +AGIN+A   N  +     R +SYIGV+IDDL +KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGTIAGINAAIYCNNGEPFIMKRDESYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT     LG     R   + +  Q  + L    + +
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEKAYHLGIAKRDRYDWWIQKKQAVDELIQFCEQM 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-------FSSLV 532
            + +K+++S   ++            + ++ P  ++QNL  I P  ++           +
Sbjct: 481 PIKAKDINSQLEALGTTPLRAGCKLIDLIARPHLNLQNLAEIIPALKEKLHMPENRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ I A+++   E   I   F+Y+ L  +S E ++KL+ + P  L
Sbjct: 541 AEAAEIKMKYKGYIEREKIVAEKMHRLENIKIKGRFNYAELHEISTEGRQKLTKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLLGR 623


>gi|205356211|ref|ZP_03222977.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345816|gb|EDZ32453.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 619

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 363/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + ++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLHSVNGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYGLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|307748094|gb|ADN91364.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Campylobacter jejuni subsp. jejuni M1]
          Length = 619

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 364/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSKNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFEDAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +N   RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENVILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P      +  +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPMFETMDNYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|325268313|ref|ZP_08134946.1| glucose inhibited division protein A [Prevotella multiformis DSM
           16608]
 gi|324989455|gb|EGC21405.1| glucose inhibited division protein A [Prevotella multiformis DSM
           16608]
          Length = 623

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/623 (40%), Positives = 361/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFKYDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q
Sbjct: 61  IDALGGYMGLVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +     TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   + 
Sbjct: 121 DQADELLTENGKVLGIRTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C 
Sbjct: 181 FTESITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TCNTNEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPWEIQLEAIHRIPALRNAKIYRPGYAIEYDYFDPTQLKHSLESKIID 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGTVAGINAALLCAGKAPFVMNRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG     R + + +  +  + +     + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEQAYRLGIARRDRYEWWLQKKEHISRITDFCNNT 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +    ++              A   + ++ P  + +NL ++ P  ++           +
Sbjct: 481 SVKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFENLSAVVPALKEAIEASPNRQEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++   E   I   FDY  L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYGRLHDLSTECRQKLERIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|86152857|ref|ZP_01071062.1| glucose-inhibited division protein A [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843742|gb|EAQ60952.1| glucose-inhibited division protein A [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 619

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 365/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVEGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHYKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|255020230|ref|ZP_05292299.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970372|gb|EET27865.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 624

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/594 (47%), Positives = 385/594 (64%), Gaps = 3/594 (0%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           ST L+T    TIG MSCNPAIGG+GKGHLV+EIDALDGLMGR  DAAGIQFR LN +KGP
Sbjct: 29  STLLLTQNLDTIGQMSCNPAIGGIGKGHLVKEIDALDGLMGRAIDAAGIQFRTLNRRKGP 88

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AV+  R QADR  YR A+++ + +   L + QG VA        ++ + +++   I    
Sbjct: 89  AVQATRAQADRVRYRQAIRQLLEALPQLHLFQGTVADLLLRGGRVAGVQLENGIEIGAGA 148

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLTTGTFL G I+IG  +  AGR GD P+N+L       +F  GRLKTGTP R+DG++I
Sbjct: 149 VVLTTGTFLGGQIYIGDRRTAAGRAGDPPANALAQRLRAMEFPVGRLKTGTPPRIDGRSI 208

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            +   E Q  D    PFSF+  ++   Q+ C IT TN  TH +I  N++ SA++ G I++
Sbjct: 209 DYRHLEPQPGDTPPRPFSFLNRRVVLGQLPCYITHTNRRTHEVIAANLQRSALFGGFIQA 268

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDKIVRF ++  HQIFLEPEGL+T  VYPNGIST+LP  +Q + + TIPGL
Sbjct: 269 TGPRYCPSIEDKIVRFADKESHQIFLEPEGLDTQEVYPNGISTSLPFAVQEELVHTIPGL 328

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E   ++RPGYAIEYDY++P++L  +L+++++ GLF AGQINGTTGYEEAAAQGL+AGIN+
Sbjct: 329 EAAILLRPGYAIEYDYLDPRDLDHSLQSRRLPGLFCAGQINGTTGYEEAAAQGLLAGINA 388

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
            R     +  C +R ++Y+GV++DDL S+GV EPYRMFTSRAEYR+ LR DNAD RLTPI
Sbjct: 389 VRSLRGEETWCPARHEAYMGVLVDDLVSRGVDEPYRMFTSRAEYRLQLREDNADRRLTPI 448

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD---GKTRTAYE 506
           G  LG +G+ R + F +   +    R  L  L +      +  +         +  +A E
Sbjct: 449 GRGLGLVGDERWRHFEEKQAQLERERERLAGLRVRLDAQMAQGVGMDTSAGEPRDLSALE 508

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            L  P++    +  +        + V E L+IE+ YA Y  RQ  E +         IP+
Sbjct: 509 LLRRPEWDYAAVVRLVGGEGDLPAAVAEHLEIETKYAGYIQRQAEEIERAARWAHASIPE 568

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           D DY  L +LS E++++L   +P  + +AS+I G+TPAA++LLLI++K+  ++ 
Sbjct: 569 DLDYGHLHSLSFEVRQRLQRQRPRTVGEASRIPGVTPAAISLLLIHVKRRQLQA 622


>gi|153951262|ref|YP_001397717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|166222921|sp|A7H2I7|MNMG_CAMJD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|152938708|gb|ABS43449.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 619

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/618 (42%), Positives = 363/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q +V+
Sbjct: 62  GGFMGEITDEAGIQFRILNESKGVAVQGSRVQIDMDKYRIIARNKLLKLPNLEISQEQVS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 ALIVENDKVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D  +I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDATSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + ++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLHSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAVQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYVLGLLSEQDFAYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P      +  +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNFQKIVARASFDIEKLKKLDPMFETMDNYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 CHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|148926192|ref|ZP_01809877.1| glucose inhibited division protein A like protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145845363|gb|EDK22456.1| glucose inhibited division protein A like protein [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 619

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 364/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAVQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|269837669|ref|YP_003319897.1| glucose-inhibited division protein A [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786932|gb|ACZ39075.1| glucose-inhibited division protein A [Sphaerobacter thermophilus
           DSM 20745]
          Length = 663

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 368/652 (56%), Gaps = 30/652 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +    +DVIVIG GHAGCEAA  +A+ G +T ++T     IG M CNP+IGG  KGHLVR
Sbjct: 3   VYTEQFDVIVIGAGHAGCEAALASARAGCTTLVLTPNLDRIGFMPCNPSIGGPAKGHLVR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G MGR  D   IQ R+LN  KGPAV+ PR QAD+ LY +AM+  +  Q  L + 
Sbjct: 63  EVDALGGEMGRAIDRTAIQIRMLNTSKGPAVQAPRAQADKMLYPMAMKEALERQPRLTLR 122

Query: 121 QGEVAGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           Q  V          ++ + ++     +      VV+T GTFLRG +  G+ +   GR GD
Sbjct: 123 QEAVTDIELVTAGGRHRVQAVRTDAGNRYLAGAVVVTAGTFLRGRMIAGEWRAAGGRAGD 182

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------ 230
             + +L  S         RLKTGTP R+D ++I + K E Q   +R + FSF        
Sbjct: 183 PAATALSASLSDLGIRLRRLKTGTPPRIDARSIDFSKAEVQTGSDRPLWFSFDGAQGRIE 242

Query: 231 -------------DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                              Q+ C +  TN  TH II  NI  + +++G I++ G RYCPS
Sbjct: 243 RLELPPLPIYPGITDGWRVQMPCYLIHTNPATHDIIAANIDRAPMFNGTIQAVGTRYCPS 302

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDKIVRF ++  H +FLEPEG  T  VY  G +T+LP+++Q  F+RTIP L +  I R 
Sbjct: 303 IEDKIVRFRDKPSHGLFLEPEGWRTTEVYVQGANTSLPQDVQLAFLRTIPALAEATITRY 362

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYA+EYD I+  EL  TL  +++ GLF AGQ+ GT+GYEEAA QG+VAG+N+A  +   +
Sbjct: 363 GYAVEYDAIDSSELTRTLAARRVDGLFFAGQVCGTSGYEEAAGQGIVAGLNAACFTQGAE 422

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
            +   R  SYIGVMIDDLT++  +EPYRM TSRAE+R+ LR DNA+ RL+ I  + G I 
Sbjct: 423 PLVLRRDQSYIGVMIDDLTTQEFVEPYRMLTSRAEHRLLLRCDNAEARLSDIAYRFGLIS 482

Query: 458 ERRQKRFAKYIQEYNFLRSLL--KSLVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPDFS 514
             R +      +      + L    L +  +   +          + +TA ++L  P+  
Sbjct: 483 RERWEAVQAESRIITETLARLAAHHLSMNPRTAEALERAGLPPLARNQTALDYLRRPEVR 542

Query: 515 IQNLFSICP----DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
            + L S+      D+    S + ER+++E+ Y AY  +++   + I+  E+R IP   DY
Sbjct: 543 YEALASVLEALGADSLSVPSRLAERIEVEARYEAYIEKELARVERIRHLEERPIPDGIDY 602

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++L  L NE +EKL+  +P  L QAS+I G+TP  + +L++++++    + E
Sbjct: 603 TALAGLRNEAREKLARFRPATLGQASRIAGVTPGDVAVLMVHLERGAASIEE 654


>gi|325859685|ref|ZP_08172815.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola CRIS 18C-A]
 gi|325482611|gb|EGC85614.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola CRIS 18C-A]
          Length = 623

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/623 (40%), Positives = 360/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFKYDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q
Sbjct: 61  IDALGGYMGMVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +     TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   + 
Sbjct: 121 DQADELLTENGKVLGIKTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C 
Sbjct: 181 FTESITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TCNTNEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPWEIQLEAIHRIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKVID 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGTVAGINAALLCAGKAPFVMNRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    ++G     R + + +     N +     + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEQAYEIGIARRDRYEWWLQKKANINRITDFCNNT 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +    ++              A   + ++ P  + +NL ++ P  ++           +
Sbjct: 481 SVKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFKNLSAVVPALKEAIEASPNRQEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++   E   I   FDY  L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYGRLHDLSTECRQKLERIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|284926412|gb|ADC28764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 619

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 364/618 (58%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYGLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F I+ L  + P         +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPIFETMDHYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|194476846|ref|YP_002049025.1| glucose-inhibited division protein A [Paulinella chromatophora]
 gi|171191853|gb|ACB42815.1| glucose-inhibited division protein A [Paulinella chromatophora]
          Length = 638

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/634 (42%), Positives = 386/634 (60%), Gaps = 18/634 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             ++++IV+GGGHAGCEAA  AA+LG STAL +     IG   CNPA+GG  K  LV E+
Sbjct: 8   TETFELIVVGGGHAGCEAAIAAARLGISTALFSLNLDRIGWQPCNPAVGGPAKSQLVHEV 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G++G++ADA  +Q RVLN  +GPAV   R Q D+  Y   M + + +  NL + + 
Sbjct: 68  DALGGIIGKLADATALQKRVLNSSRGPAVWALRAQTDKRQYACQMLQTLQNTPNLALREA 127

Query: 123 EVAGF------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
            V         NT  N++  +     S+     ++LTTGTFL G I +GK  +PAGR G+
Sbjct: 128 MVTSIETVNSSNTGINVVCGVRTYFGSLYAGKAIILTTGTFLGGQIWVGKQSMPAGRAGE 187

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITN 235
           +P+  L  +     F   RLKTGTPAR+D ++I     E Q ++     FSF     I++
Sbjct: 188 APAEGLTENLRNLGFIIERLKTGTPARVDRRSISIHALEAQPSNASNRFFSFDPSLWISS 247

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q+ C +TRT   TH++I +N+  + IY G I+S GPRYCPSIEDK+VRF ++  HQIFL
Sbjct: 248 KQMNCYMTRTTSSTHKLIRQNLHLTPIYGGSIESKGPRYCPSIEDKVVRFADKESHQIFL 307

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG +T  +Y  G ST LPE +Q   +RT+PGLE   +++P YA++YDY+   +L  TL
Sbjct: 308 EPEGRDTPELYIQGFSTGLPERLQLALLRTLPGLENCVMLKPAYAVDYDYLPATQLKSTL 367

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETK ++GLF AGQINGTTGYEEAAAQGLVAG+N++R  +    I F+R +SYIG +IDDL
Sbjct: 368 ETKHVAGLFCAGQINGTTGYEEAAAQGLVAGLNASRFISGEKTITFARENSYIGTLIDDL 427

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
             + + EPYR+ TSR+EYR++LR DNAD RLTP+G ++G I +RR + +   +Q     +
Sbjct: 428 VKQNLREPYRVLTSRSEYRLTLRGDNADRRLTPLGYEIGLIDKRRWELYQHKLQAIENEK 487

Query: 476 SLLKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           + L+ + L   +      +S T +S K    + T  E L  P     +L      +    
Sbjct: 488 NRLEKVRLKVTDFANSVIVSETGVSIKG---SITLAELLRRPGMHAIDLVRHGLMSDNLR 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V E ++I++ Y  Y  RQ  +  ++K +E + IP D +Y S+  LS E +E LS +KP
Sbjct: 545 KDVRESVEIDTKYRGYLSRQQQQIDQVKKQEHKPIPMDTNYLSIHTLSKEARENLSKIKP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIY--IKKNTVKLN 621
            NL QA++I G++ A +  L+I+  + K +   N
Sbjct: 605 TNLGQAARIPGVSQADMTALIIWLALHKQSTSSN 638


>gi|86134803|ref|ZP_01053385.1| glucose inhibited division protein A [Polaribacter sp. MED152]
 gi|85821666|gb|EAQ42813.1| glucose inhibited division protein A [Polaribacter sp. MED152]
          Length = 625

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/623 (41%), Positives = 373/623 (59%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +R+YDVIV+GGGHAG EAAA AA +GA T LIT     I  MSCNPA+GG+ KG ++R
Sbjct: 3   LFSRTYDVIVVGGGHAGSEAAAAAANMGAHTLLITMNLQNIAQMSCNPAMGGIAKGQIIR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V D   IQF++LN  KGPA+  PR Q+DR  +    +  +   EN+D  
Sbjct: 63  EIDALGGYSGIVTDKTAIQFKMLNKSKGPAMWSPRAQSDRMQFAECWRTMLEQTENVDFY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   + N I  +       I   TV++T GTFL G+IHIG      GR G++ S 
Sbjct: 123 QDSVNGLVFDGNKIIGVKTALGLEINAKTVIITAGTFLNGLIHIGDKSFGGGRAGEAASR 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            +    +   F+ GR+KTGTP R+DG+++ + K  +Q  DE    FS++ T     +Q  
Sbjct: 183 GITEDLVAKGFEAGRMKTGTPPRVDGRSLDYSKMTEQPGDEITEKFSYLPTTTALKKQRS 242

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E H ++ E    S +++G I+S GPRYCPS+EDK+ RF  +  HQIF+EPEG
Sbjct: 243 CWLTYTNPEVHNLLREGFDRSPMFNGRIQSSGPRYCPSVEDKVDRFATKERHQIFVEPEG 302

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T  +Y NG ST+LPE+IQ + IR + G E V  +R GYAIEYD+  P +L  +LETK 
Sbjct: 303 WSTIEMYVNGFSTSLPEDIQDKAIRAVAGFENVKFLRYGYAIEYDFFQPTQLKHSLETKL 362

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LF AGQINGTTGYEEAAAQGL+AG+N+A K    D     R ++YI V+IDDL +KG
Sbjct: 363 IENLFFAGQINGTTGYEEAAAQGLMAGVNAALKVQGKDPFTLKRDEAYIAVLIDDLITKG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G +LG   + R  R  +  ++ + L   L+
Sbjct: 423 TEEPYRMFTSRAEYRTLLRQDNADLRLTPKGFELGLASKERMDRVLEKQRKTDLLIQFLE 482

Query: 480 SLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLV 532
              +  + ++    + +     ++   ++  + P     +  S+       +       +
Sbjct: 483 KTSVKKEEVNPILEAKNLALINQSMKLFKIAARPQLDFSDFESVEKLSAFIEENDIDKEI 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE+ +I   Y+ Y  ++   A ++   E   IP  F+Y  L +LS E +EKL+ ++P ++
Sbjct: 543 IEQAEIHLKYSGYINKEKNNADKLNRLENVKIPASFNYQKLQSLSFEAREKLTKIQPTSI 602

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +++LL+Y+ +
Sbjct: 603 SQASRISGVSPSDISVLLVYMGR 625


>gi|118475109|ref|YP_892585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter fetus subsp. fetus 82-40]
 gi|205831518|sp|A0RQV2|MNMG_CAMFF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|118414335|gb|ABK82755.1| glucose-inhibited division protein A [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 621

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/620 (44%), Positives = 373/620 (60%), Gaps = 3/620 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGGHAG EA+  AAK+GA T LIT     IG+ SCNPAIGGL KGHLV+EIDA
Sbjct: 2   NYDVIVVGGGHAGIEASLAAAKMGAKTLLITILAEQIGAASCNPAIGGLAKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG   DA GIQFR+LN  KGPAVRG R Q D + YR+ M+  +L+  NL+V Q   
Sbjct: 62  LGGQMGLTTDACGIQFRLLNESKGPAVRGSRAQIDMDRYRVYMRNLLLNTPNLEVTQEIA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               T+ N I  +    ++      +++TTGTFL G+IH+G  K+ AGR+G+  S SL  
Sbjct: 122 TEILTKDNNIIGVKTHLDNNYGTKKLIITTGTFLNGLIHVGFNKLEAGRVGELSSKSLSA 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S    + + GRLKTGT  R+  K+I +   E+Q  D+   PFSF T +    Q+ C I  
Sbjct: 182 SLKSLNLEMGRLKTGTCPRVLAKSIDFSVLERQDGDQDPTPFSFRTKEFNKTQLPCYIAY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN +TH II  N   + +++G I+  GPRYCPSIEDKI RFG+R  H +F+EP+      
Sbjct: 242 TNEKTHEIIRSNFDRAPLFTGQIEGIGPRYCPSIEDKINRFGDRERHHLFIEPQTREATE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG ST+LP + Q + +R++ G +   I+R GYAIEYDY++P EL  TLETKKI+GL+
Sbjct: 302 YYINGFSTSLPYDAQVEMLRSVKGFQNAKIVRHGYAIEYDYVSPTELKHTLETKKINGLY 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQGL+AGIN+A      + +   R +SYIGV+IDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAAAQGLMAGINAALNLKTREPLILRRDESYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+ LR DNA+ RL+  G  +G + +   +   K          +L +  ++
Sbjct: 422 RMFTSRAEYRLLLREDNANLRLSKYGYNVGLLPKEAFEEMLKLKSNLEKGMEILLTKDMS 481

Query: 485 SKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +     SI      +     +  +   F+I+ L  +           + ++  E+ 
Sbjct: 482 PNKENLEFLASIDEDIINEKVPLQKIAARKSFTIEKLRKLNEFFLNLDDKSLNQILTEAK 541

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +Q IE +++K      IPK  ++ S+  LSNE+ EKL+   P  L  AS I G+
Sbjct: 542 YYHYIAQQQIEVEKMKGLLDIKIPKSLEFKSISGLSNEVVEKLNKFAPPTLAAASNISGI 601

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           TP A+++L I IK +  K  
Sbjct: 602 TPVAIDILHIAIKYHCQKTK 621


>gi|296810412|ref|XP_002845544.1| mitochondrial translation optimization protein [Arthroderma otae
           CBS 113480]
 gi|238842932|gb|EEQ32594.1| mitochondrial translation optimization protein [Arthroderma otae
           CBS 113480]
          Length = 693

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/634 (45%), Positives = 390/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDVIVIGGGHAG EA   AA+ GA TALIT   S IG  SCNP+ GG+GKG ++REI
Sbjct: 34  TRQYDVIVIGGGHAGSEACTAAARSGARTALITPSRSDIGVCSCNPSFGGIGKGTMIREI 93

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G
Sbjct: 94  DALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELSNTPGLSIVEG 153

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    V++TTGTFL G IHIG    P+G
Sbjct: 154 KVADIVISKENVKNLNGPQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSG 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L NS  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 214 RMGEAATFGLSNSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEPQLGDSPPSPFSYLNNS 273

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF +++
Sbjct: 274 VQIGDKGQLNCWSAYTNEASHDVVRENLDKSIHIRETVN--GPRYCPSLESKIIRFKDKS 331

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P
Sbjct: 332 RHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDP 391

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +I
Sbjct: 392 RSLLPTLETKLISGLYLAGQINGTTGYEEAAAQGILAGINAGLASQSKPPMILSRADGFI 451

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R + F +  
Sbjct: 452 GIMVDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRHFTETK 511

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----- 523
           ++ + LR+LL++    S   S      + D   R+A+E LS+   S+ ++          
Sbjct: 512 EQLSHLRTLLENTRHPSTLWSRKGFPVRTDSSVRSAFELLSHNGISLDDIIPHIDSSPAV 571

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 FS  +  R+ IE  YA YT RQ + A   + +E  L+P D DYS +  LS E +
Sbjct: 572 LHALSSFSPEIRSRVAIEGRYAPYTKRQEVTALSFERDENMLLPPDIDYSKMLGLSTEER 631

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 632 QALERVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|240138141|ref|YP_002962613.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens AM1]
 gi|240008110|gb|ACS39336.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens AM1]
          Length = 624

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/599 (56%), Positives = 424/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ + + D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVRSGRVAGVTLTDGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEEPAVGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRVPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSVRAAHFATSQAALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A+  LSYP+   + L ++ P+     S V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFRILSYPEIGWERLAAVWPELAAVPSRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|295698336|ref|YP_003602991.1| glucose-inhibited division protein A [Candidatus Riesia
           pediculicola USDA]
 gi|291157273|gb|ADD79718.1| glucose-inhibited division protein A [Candidatus Riesia
           pediculicola USDA]
          Length = 622

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/621 (46%), Positives = 389/621 (62%), Gaps = 4/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++DVIV+GGGHAG E A  ++K+G  T LITH    IG +SCNP+IGG+GKGHLV+E
Sbjct: 1   MKNNFDVIVVGGGHAGSEGAFASSKIGCKTLLITHNMRKIGELSCNPSIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+DG+M   AD +GI F+ LN KKG AV+  R Q DR+ Y+ ++  ++  Q+N+ +IQ
Sbjct: 61  IDAMDGIMAVAADESGIHFKKLNSKKGSAVQSTRVQVDRKKYKSSVINQMKKQKNIFIIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V       N +  +  +++      +VVL+ GTFL G IHIG      GR+ D  S +
Sbjct: 121 QSVKKLILRNNRVIGVTTEEDIQFFSKSVVLSAGTFLNGRIHIGSKIFSGGRIRDVSSIT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L      F F   RLKTGTP R+D KTI +   EKQ  D  +  FSF+       +QI C
Sbjct: 181 LIKQLRCFPFKIKRLKTGTPPRIDTKTIDFSCLEKQLGDYPISHFSFLKKIDKYRKQITC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II+EN+  S IYSG I+  GPRYCPSIEDKIV+F  ++ H IFLEPEG+
Sbjct: 241 YITHTNDKTHEIILENLHKSPIYSGKIQGIGPRYCPSIEDKIVKFQNQSSHHIFLEPEGI 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            +  VYPNGIST+LP +IQ +F+R+I GLEK  II PGYA+EYD+ +P++L  TLE+K I
Sbjct: 301 RSRKVYPNGISTSLPVDIQEKFVRSIRGLEKAKIIDPGYAVEYDFFDPRDLKQTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAA+QGL+AG+N+A  S K D     R  +YIGV+IDDL + G 
Sbjct: 361 DGLFLAGQINGTTGYEEAASQGLIAGLNAALYSLKEDQWYPKRDQAYIGVLIDDLCTVGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+R+EYR+SLR DNAD RLT +G  LG + + R     K I+         + 
Sbjct: 421 EEPYRMFTARSEYRLSLREDNADLRLTKLGYSLGVVRKERLSILKKKIKLIEKEFIKFRH 480

Query: 481 LVLT--SKNLSSTSISFKQD-GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             L   SK     + + +    KT    E L  P+ + + LF     + K +  + + L+
Sbjct: 481 TWLKKGSKKFEIMNENLRSSCNKTINIEELLKRPEVTCEKLFQFGILSEKDNMEIYKILE 540

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            +  Y  Y  +Q +E ++  F E   IPKD  Y  +  LS E+  KL   KP ++ QAS+
Sbjct: 541 SQIKYRGYIKKQELEIQKKNFYENIKIPKDIKYQKICGLSKEVLSKLDYHKPNSIGQASR 600

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+TP+A+++LLI++KK  V
Sbjct: 601 ISGVTPSAISILLIWMKKRKV 621


>gi|102139963|gb|ABF70103.1| glucose-inhibited division A family protein [Musa balbisiana]
          Length = 730

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/626 (42%), Positives = 378/626 (60%), Gaps = 4/626 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  AA+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 76  IEEQYDVIVVGGGHAGCEAALAAARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 135

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y L M++ + S  NL + +
Sbjct: 136 VDALGGEIGKIADRCYLQKRVLNRSKGPAVRALRAQTDKREYALEMKKVVESTTNLFIRE 195

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      + + +  +           +VVLTTGTF+ G I +G+  + AGR G+S S+
Sbjct: 196 AMVTNILVGKNDTVEGVSTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMAAGRAGESASH 255

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S  +  F+T RLKTGTPAR+D +++ +   E Q  DE +  FSF  D  +   Q+ 
Sbjct: 256 GLTESLQQLGFETDRLKTGTPARVDYRSVNFSGLEPQHGDEEVNWFSFDPDYHVEREQMC 315

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 316 CYLTRTTKDTHQLIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKDSHQIFLEPEG 375

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 376 RTVPELYVQGFSTGLPERLQLTLLRTLPGLENCLMLRPAYAVEYDYLPAHQCSRSLMTKK 435

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLF +GQINGTTGYEEAAAQGLV+GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 436 IEGLFFSGQINGTTGYEEAAAQGLVSGINAARHSDGKSIIILERESSYIGTLIDDLVTKD 495

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I ERR   +          +  LK
Sbjct: 496 LREPYRMLTSRSEHRLLLRADNADSRLTPLGWDIGLIDERRWNLYQLKQTRILEEKERLK 555

Query: 480 SLVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S+ ++  + ++    +S +    + +    L  P    + L          S +  E ++
Sbjct: 556 SVRISGGDFAAEVSHLSGQPVKDSSSLESILKKPHVEYKVLDKHGYGNELLSRIEKECVE 615

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I+  YA +  RQ  + ++I  ++ + +P+D DY S+  LS E +EKLS ++P  + QAS+
Sbjct: 616 IDIKYAGFIARQRSQLQQIVNQQHKRLPEDLDYYSMTTLSLEAREKLSKVRPQTIGQASR 675

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNEI 623
           + G++PA +  LLI ++      +E+
Sbjct: 676 VGGVSPADMTALLICLEAKRRMASEM 701


>gi|323342281|ref|ZP_08082513.1| glucose inhibited division protein A [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463393|gb|EFY08587.1| glucose inhibited division protein A [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 616

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/617 (40%), Positives = 371/617 (60%), Gaps = 9/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  +A++G  TAL T     I SM CNP+IGG  KG +VREI+AL
Sbjct: 2   YDVIVVGGGHAGVEAAVASARMGQRTALFTLNVDKIASMPCNPSIGGPAKGIVVREIEAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+MG++AD   +QFR+LN  KGP V+  R Q+D+  Y  AM+  +L++  ++++Q  V 
Sbjct: 62  GGVMGKIADKTALQFRILNSSKGPGVQCLRVQSDKLAYSRAMRDAVLAEPGIEIVQKMVE 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E  +++ +  + +  +   TV++T+GT++   I +      +G  GD  +N+L  S
Sbjct: 122 GVVAENGVVTGVRCKGDEFVAAKTVIITSGTYMSSKILLSSTVTVSGPDGDPTTNNLSES 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGIT 243
                  T RLKTGTPAR+   +I + KT  Q  D+    FS  T  D +   Q  C +T
Sbjct: 182 LRALGLKTFRLKTGTPARVYTDSIDFSKTTIQPGDDEPYYFSNSTKKDDVIKEQYPCYLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N++ S++YSG ++  G RYCPSIEDKIVRF ++N HQIFLEPE    D
Sbjct: 242 YTNPTTHDLIEANLEKSSMYSGVVEGVGARYCPSIEDKIVRFSDKNRHQIFLEPESAELD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
             Y  G+S++LPE++Q   IRT+PGLE   + R GYAIEYD I+P +L P+LE   +  L
Sbjct: 302 TTYVQGLSSSLPEDVQDAMIRTVPGLENCRVQRYGYAIEYDAIDPIQLKPSLEIMTVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN+A K+   + +   R ++YIGVM+DDL +KG LEP
Sbjct: 362 FTAGQINGTSGYEEAAGQGLMAGINAALKNQGKEPLILKRDEAYIGVMLDDLVTKGTLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAEYR+ LR DNA  RL+  G ++G + +   ++    IQ  +      K++ L
Sbjct: 422 YRLLTSRAEYRLLLRHDNAYRRLSHFGHEIGLLSDEDYEKIELDIQIIDEFIEASKTIKL 481

Query: 484 TSKNLSSTSISFKQDGK----TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
              N    +   ++D        T Y+ +  P   +  +  +     +    +  ++Q+E
Sbjct: 482 -PHNPEFEAYFAEKDSPFQAHDLTIYDAVKRPGIELLEVLELM--DMEVRKDLAFQIQVE 538

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y  Y  + M EA++++  E   +P+D +Y S+  LS E ++KL+ ++P  + QAS+I 
Sbjct: 539 IKYEGYIKKAMKEAEKLRSMENIKLPEDINYDSIENLSIEGRQKLTAVRPITMGQASRIS 598

Query: 600 GMTPAALNLLLIYIKKN 616
           G+ PA + +L + +K  
Sbjct: 599 GVNPADIAILAMVLKHK 615


>gi|288925946|ref|ZP_06419876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccae D17]
 gi|288337370|gb|EFC75726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella buccae D17]
          Length = 623

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/624 (41%), Positives = 369/624 (59%), Gaps = 10/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI + YDVIVIGGGHAGCEAA  AA +GA T LIT   + I  MSCNPA+GG+ KG +VR
Sbjct: 1   MIYK-YDVIVIGGGHAGCEAATAAAHMGAHTCLITMDMNKIAQMSCNPAVGGIAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLDV 
Sbjct: 60  EIDALGGQMGLVTDNTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTMLDRTDNLDVW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +      E      +        R  +V++T GTFL G++H+G+ KI  GR  +   +
Sbjct: 120 QDQADELIVENGEAVGVTTIWGVEFRAKSVIVTAGTFLNGLMHVGRHKIEGGRCAEPAVH 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
               S  +    + R+KTGTP R+D +++ ++  E Q  D     FS+M  +   +Q+ C
Sbjct: 180 YFTESITRHGIVSARMKTGTPVRIDKRSVHFEDMEIQQGDSGFHRFSYMGQERKLKQLPC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG 
Sbjct: 240 WTCYTNGEVHEVLKGGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGE 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K +
Sbjct: 300 NTNEMYLNGFSSSMPLDIQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIL 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ+NGTTGYEEA  QGLVAG+N+A   N  +    +R +SYIGV+IDDLT+KGV
Sbjct: 360 SGLFFAGQVNGTTGYEEAGGQGLVAGVNAAIHCNGGEPFVMNRDESYIGVLIDDLTTKGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD+RLT     LG    +R   + +  +    + S  + 
Sbjct: 420 DEPYRMFTSRAEYRILLRQDDADSRLTEKAYNLGIATRKRYDWWLEKKEAIERIISFCED 479

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSL 531
             +  +  N    ++            + ++ P+ ++QNL  I P  ++           
Sbjct: 480 TPINKEHINPQLEALGTTPLRAGCKLVDLVTRPNLTLQNLSEIIPSLKEILESPKNRKEE 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E  +I+  Y  Y  R+ I A ++   E   I   FDY++L  +S E ++KLS ++P  
Sbjct: 540 ITEAAEIKMKYKGYIDRERIVADKMHRLENIKIKGRFDYATLHEISTEGRQKLSSIEPET 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +N+LL+ + +
Sbjct: 600 LAQASRIPGVSPSDINVLLVLLGR 623


>gi|283954746|ref|ZP_06372262.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793586|gb|EFC32339.1| glucose inhibited division protein A [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 619

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/618 (43%), Positives = 367/618 (59%), Gaps = 3/618 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGIAVQGSRAQIDMDKYRIIARNKLLKLSNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 TLIIENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
               D   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLDLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKSNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q + +I G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQAQMLHSIKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQGL+AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGLMAGINASLSIDTKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLFLREENAILRLGKYGYDLGLLSEQDFAYIQNIANNLQKGLEFLLSKKFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            N ++    S+   +        + ++   F+++ L  + P      +  +  +  E+ Y
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFNVEKLKKLNPMFEAMDNYSLREILNEAKY 541

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+T
Sbjct: 542 YHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVIEKLNHHKPPTIFAASQISGIT 601

Query: 603 PAALNLLLIYIKKNTVKL 620
           PAAL++L IYIK    K 
Sbjct: 602 PAALDILQIYIKMQKKKA 619


>gi|322378813|ref|ZP_08053239.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS1]
 gi|321148737|gb|EFX43211.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS1]
          Length = 624

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/614 (43%), Positives = 357/614 (58%), Gaps = 3/614 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EA+ VAAK+GA   L+T     IG  SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 3   DIVVVGGGHAGIEASIVAAKMGAKVHLLTLLIENIGLASCNPAIGGLGKGHLVKEIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG ++D +G+QFR+LN  KGPAVRG R Q D +LYR   +  +L+  NL V Q  V G
Sbjct: 63  GVMGILSDLSGLQFRILNASKGPAVRGTRAQIDMDLYRQNARNLVLNTSNLSVSQEMVEG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +        + S V+LTTGTFL+G++HIG      GR G+S S  L    
Sbjct: 123 LLIENGAVVGVKSTLGKEYKASKVILTTGTFLQGLVHIGTHTSQNGRFGESASIELAKHL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                + GRLKTGT  RL G +I + + E  F D     FS  T      Q+ C IT TN
Sbjct: 183 KTLGLEIGRLKTGTCPRLAGNSIDFTELEAHFGDFPPPKFSHKTKDFNPIQLPCFITYTN 242

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH +I +N   + ++SG I+  GPRYCPSIEDKI RF ++  HQ+FLEP+  +    Y
Sbjct: 243 SKTHALIEQNFHLAPMFSGQIEGVGPRYCPSIEDKIYRFKDKERHQLFLEPQTKSGSEYY 302

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP  +Q Q I +I GLE  +I R GYAIEYD+I P  L  +LE+K+I  L+LA
Sbjct: 303 VNGLSTSLPFHLQEQVIHSIKGLEHAHITRYGYAIEYDFIQPTGLEYSLESKQIKNLYLA 362

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAAAQGL+AGIN+         +   R ++YIGVMIDDL SKG  EPYRM
Sbjct: 363 GQINGTTGYEEAAAQGLLAGINACLTLQNKPPLILRRDEAYIGVMIDDLVSKGTQEPYRM 422

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS- 485
           FTSRAEYR+ LR DNA  RL      LG + E+   +  K   +       LK+   T  
Sbjct: 423 FTSRAEYRLLLREDNARWRLCKYAYALGLMSEKEHAKLQKQQDQITKALENLKNTHFTPS 482

Query: 486 KNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           K          Q+G                S++ L S+    +     V+E+++I   Y 
Sbjct: 483 KETLQKLQDLGQEGINDKCNGVFLAGRDSCSVEILSSLFSFLQNLEPEVLEQVKIACKYH 542

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +Y  +Q      ++   +  IP DF +  +P L  E  EKL   +P +L +AS+I G+TP
Sbjct: 543 SYIEKQSASIARMEQMLQNKIPSDFVFHKIPGLGLEAIEKLERFRPKSLFEASQISGITP 602

Query: 604 AALNLLLIYIKKNT 617
           + L +L +Y+  +T
Sbjct: 603 SNLEVLQLYLHLHT 616


>gi|224437483|ref|ZP_03658445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter cinaedi CCUG 18818]
 gi|313143939|ref|ZP_07806132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter cinaedi CCUG 18818]
 gi|313128970|gb|EFR46587.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Helicobacter cinaedi CCUG 18818]
          Length = 632

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/628 (42%), Positives = 368/628 (58%), Gaps = 14/628 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+GGGHAG EA+  +AK+GA T L+T     I   SCNPA+GGLGKGHLV+EIDA
Sbjct: 2   EYDVLVVGGGHAGLEASIASAKMGAKTHLLTLLIQNIALASCNPAVGGLGKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG + D  GIQFR+LN  KGPAVRG R Q D + Y +  +   L+  NL + Q  V
Sbjct: 62  LGGVMGEITDKCGIQFRILNSSKGPAVRGTRAQIDMDRYSIIAKDIALNTPNLTLSQESV 121

Query: 125 AGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                E+      I   +            V+LTTGTFLRG++HIG+ KI  GR G+   
Sbjct: 122 ESLIYEQDSQGRFIAKGVKTNIGKTYYAKAVILTTGTFLRGLVHIGESKIQNGRFGEMSP 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
            +L  S  +     GRLKTGT AR+DG++I + + E    D     FS  T      Q+ 
Sbjct: 182 QNLSTSLQELGLSLGRLKTGTCARIDGRSIDFSRLETHSGDSNPPHFSHKTKDFAPTQLP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  HQ+FLEP+ 
Sbjct: 242 CFVTYTNEKTHNIIRSNFHRAPLFTGQIEGVGPRYCPSIEDKINRFADKERHQLFLEPQT 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                 Y NG++T+LP ++Q + I +I GLE  +I R GYAIEYDY+ P EL+ TLETKK
Sbjct: 302 QEAVEYYINGLTTSLPIDVQEEMIHSIEGLENAHITRYGYAIEYDYVEPTELYHTLETKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
            + LFLAGQINGTTGYEEAAAQG++AGIN+A      +    +R ++YIGVMIDDL +KG
Sbjct: 362 CANLFLAGQINGTTGYEEAAAQGIMAGINAALSLKG-ESFSLARNEAYIGVMIDDLVTKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNA  RL P    LG + +   ++  +  +      + L+
Sbjct: 421 TKEPYRVFTSRAEYRLLLREDNAYLRLVPYAFALGLVTKEYYEKTMQDKEHIINTMNYLQ 480

Query: 480 SLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSL 531
           +  LT   +S     S++             +   +     L ++       +    S  
Sbjct: 481 NNYLTPSQISLDMLKSLNLSPISDKTLLIHIIGREELEPHRLRTLLAKCGVENVESMSEK 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            IE++ IES Y  Y  +Q  +  +++   +  IP+DF +  +P LS E+ EKL    P +
Sbjct: 541 AIEQIFIESKYFDYIQKQKEQIGQMEQMLQVEIPRDFVFDKIPGLSLEVIEKLKKFTPKS 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVK 619
           L +AS+I G+TPA++++L +YI  +  K
Sbjct: 601 LFEASEISGITPASIDVLHLYIHLHHKK 628


>gi|91215357|ref|ZP_01252328.1| glucose-inhibited division protein A [Psychroflexus torquis ATCC
           700755]
 gi|91186309|gb|EAS72681.1| glucose-inhibited division protein A [Psychroflexus torquis ATCC
           700755]
          Length = 623

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 388/623 (62%), Gaps = 8/623 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   +YDVIV+G GHAG EAAA AA +G+ST L+T     I  MSCNPA+GG+ KG ++R
Sbjct: 1   MFKDTYDVIVVGAGHAGSEAAAAAANMGSSTLLVTMNLQNIAQMSCNPAMGGIAKGQILR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+ G  G V+D + IQF++LN  KGPA+  PR Q+DR ++    + ++   +NLD  
Sbjct: 61  EIDAIGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMMFSQHWREKLEQTQNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   EK+ +  +       I+  TV+LT GTFL G+IHIG      GR G+  S 
Sbjct: 121 QEMVSGLMVEKHKVVGVRTSLGLEIKAKTVILTNGTFLNGLIHIGNKNFGGGRAGERAST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            +    ++  F+ GR+KTGTP R+DG+++ + K E+Q  DE    FS+ ++ K   +Q  
Sbjct: 181 GMTAELIELGFEAGRMKTGTPPRVDGRSLDFSKMEEQPGDENPWKFSYSSETKPLEKQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ E H I+ E    S +++G I+S GPRYCPSIEDKI +F ++  HQ+F+EPEG
Sbjct: 241 CWMTYTSPEVHNILKEGFDRSPMFNGAIQSTGPRYCPSIEDKIHKFADKERHQMFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT   Y NG ST+LPE+IQ++ ++ + G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTIEYYVNGFSTSLPEDIQYKALKLVAGFENVKFFRPGYAIEYDYFPPTQLRHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AG+N+A K  + +    SR+++YIGV+IDDL +KG
Sbjct: 361 VEGLYFAGQINGTTGYEEAASQGLMAGMNAALKVQEKEDFILSRSEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLT     +G     R K   +  ++        K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTGKSFGVGLASSERMKVMEEKKKKSETFVEFFK 480

Query: 480 SLVLTSKNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
           +  +T+  ++    S K     +    Y+ L+ P+  ++++  +       +     + V
Sbjct: 481 NQSVTTDEINPILGSKKSSKVDQQGKLYKILARPNIVMEDMRKLESVKKHIEENNLGNEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E+++++  YA Y  ++ + A ++   E   IP+ F+Y+ L ++S E +EKL+ +KP  +
Sbjct: 541 LEQVEVQVKYAGYIEKEKLNADKLNRLENVRIPEHFNYNGLKSMSLEAREKLTKIKPRTI 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS++ G+ P+ +++LL+++ +
Sbjct: 601 SQASRVSGVNPSDVSVLLVHMGR 623


>gi|327312874|ref|YP_004328311.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Prevotella denticola F0289]
 gi|326945842|gb|AEA21727.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella denticola F0289]
          Length = 623

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/623 (40%), Positives = 359/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIGGGHAGCEAA  AA +GA T L+T   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MKFKYDVLVIGGGHAGCEAATAAANMGADTCLVTMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DR  +    ++ +   ++LD+ Q
Sbjct: 61  IDALGGYMGMVTDATAIQFRMLNRSKGPAVWSPRAQCDRGKFIWEWRKRLDHTDHLDIFQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +     TE   +  I       +   TV++T GTFL G++HIG+ K+  GR  +   + 
Sbjct: 121 DQADELLTENGKVLGIKTIWGICLYAQTVIVTAGTFLNGLMHIGRRKVEGGRCAEPAVHH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  +    + R+KTGTP R+D +++ +D+ E Q  +     FSF        Q+ C 
Sbjct: 181 FTESITRHGIRSERMKTGTPVRIDRRSVHFDEMESQPGETDYHQFSFFGPHRQLPQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN + H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TCNTNEQVHEVLRSGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKHSHPLFLEPEGTD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P EIQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPWEIQLEAIHRIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKVID 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGTVAGINAALLCASKAPFVMNRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    ++G     R + + +     N +     + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEQAYEIGIARRNRYEWWLQKKANINRITDFCNNT 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY--EFLSYPDFSIQNLFSICPDA-------RKFSSLV 532
            +    ++              A   + ++ P  + +NL ++ P               +
Sbjct: 481 SVKPDVVNGLLEQLGTSPIKGAARITDLVARPQVNFKNLSAVVPALKGAIEASPNRQEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A+++   E   I   FDYS L  LS E ++KL  ++P  L
Sbjct: 541 AEAAEIKLKYKGYIDRERVFAEKMHRLEDIKIKGYFDYSRLHDLSTECRQKLERIQPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLMGR 623


>gi|188580910|ref|YP_001924355.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium populi BJ001]
 gi|205831532|sp|B1ZGG2|MNMG_METPB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|179344408|gb|ACB79820.1| glucose inhibited division protein A [Methylobacterium populi
           BJ001]
          Length = 624

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/598 (56%), Positives = 422/598 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAAA AA++GA TAL+TH+  TIG+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 8   YDVIVVGGGHAGVEAAAAAARVGARTALVTHRAETIGTMSCNPAIGGLGKGHLVREVDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLM RVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE  
Sbjct: 68  DGLMARVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPGLTVIEGEAD 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   ++  ++ D   +    VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  +
Sbjct: 128 DLIVEAGRVAGAMLADGRRLAAGAVVITTGTFLRGLIHIGERQIPAGRVGEEPALGLART 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITRT
Sbjct: 188 LDRHGFRLGRLKTGTPPRLDGRTIDWTALEMQHADADPVPFSTLTERITTPQIACGITRT 247

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H +I EN+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   V
Sbjct: 248 TQRVHDLIRENLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPTV 307

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGISTALPE +Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLFL
Sbjct: 308 YPNGISTALPEVVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLFL 367

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QGLVAG+N+AR +   +   F R +SY+GVMIDDL + GV EPYR
Sbjct: 368 AGQINGTTGYEEAAGQGLVAGLNAARLAGASELAVFDRAESYLGVMIDDLVTHGVSEPYR 427

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT 
Sbjct: 428 MFTSRSEYRLSLRVDNADERLTPRGAALGCVGSIRAAHFAASQGALSEARTRLDTLSLTP 487

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              ++  ++  +DG  RTA++ LSYP+     L +I PD       + ERLQ +++YA Y
Sbjct: 488 NEAAAHGLALNRDGLRRTAFQLLSYPEIGWDRLAAIWPDLAAVPPRIAERLQTDATYAVY 547

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 548 LDRQQADITAFRRDEAVRLPASLDYGTIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|320109234|ref|YP_004184824.1| glucose inhibited division protein A [Terriglobus saanensis SP1PR4]
 gi|319927755|gb|ADV84830.1| glucose inhibited division protein A [Terriglobus saanensis SP1PR4]
          Length = 629

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/642 (44%), Positives = 380/642 (59%), Gaps = 40/642 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               YDV V+G GHAGCEAA  AA++G  TA+ T     I  MSCNPAIGG+ KGHLVRE
Sbjct: 3   FTEQYDVAVVGAGHAGCEAAVAAARMGLRTAIFTLNLDLIAQMSCNPAIGGIAKGHLVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ G+MG VADA GIQFR+LN  +GPAV  PR Q D+ LYR+ M+  +  ++NL + Q
Sbjct: 63  VDAMGGVMGEVADACGIQFRLLNTSRGPAVWSPRAQCDKALYRVKMREVLEREKNLFIKQ 122

Query: 122 GEVAGFNTE-------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            EV     E             +  I+ + ++D  +I    VV+TTGTFL G+IH G+ +
Sbjct: 123 AEVIDVVLEPVSGSAGQRVSTGQRRITGLRLRDGRVIEAKAVVITTGTFLNGLIHCGEQQ 182

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             AGR G+  S  L  S  K      RLKTGTP RLDG+TI W + E+Q  DE   PFSF
Sbjct: 183 YTAGRSGEPASVLLGESLKKLGLRECRLKTGTPPRLDGRTIDWARFEEQPGDEEPTPFSF 242

Query: 229 MTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            T +      +QI C I  T  ET ++I +N+  S +Y+G I+  GPRYCPSIEDKIVRF
Sbjct: 243 RTSEEQFPALKQISCYIAVTTPETLQLIRDNVHRSPMYTGQIEGIGPRYCPSIEDKIVRF 302

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            ++  HQ FLEPEGLNT  VY NG+ST+LP E+Q   +R+IPGL    ++RPGYAIEYD 
Sbjct: 303 PDKTQHQFFLEPEGLNTHEVYINGMSTSLPMEVQSAMVRSIPGLGNAEMLRPGYAIEYDA 362

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           I+  EL  +L+ K I GL+LAGQINGT+GYEEAA QGL+AGIN++            R++
Sbjct: 363 IDATELDRSLKVKSIDGLYLAGQINGTSGYEEAACQGLMAGINASLSVKGEPMFTLDRSE 422

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            Y G++IDDL SKG  EPYRMFTSRAE+R+ LR DNAD RLTP    LG I +     F 
Sbjct: 423 GYTGILIDDLISKGTNEPYRMFTSRAEFRLHLRIDNADVRLTPKARALGLITDEAWAEFE 482

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
                   L+  L++  +  + L+                  L  P+ ++ +L      A
Sbjct: 483 ARQMRMARLKVALETTRVDGELLAKR----------------LKRPEVTVFDLIP-SLTA 525

Query: 526 RKFS-------SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
            +FS           + ++ +  YA Y  +Q    +++K  E R+IP  F Y  +  LS 
Sbjct: 526 SEFSGPLGWRLKSEAKAVETQIKYAGYLAQQDRSVEKLKASEARVIPTSFSYKGISGLSR 585

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           E++EKL  ++P  + QA  I G+TPAA+ L+ I I+ +T +L
Sbjct: 586 EMQEKLERVRPMTVGQAGGIPGVTPAAMTLINILIEVHTREL 627


>gi|90421002|ref|ZP_01228906.1| glucose-inhibited division protein A [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334780|gb|EAS48556.1| glucose-inhibited division protein A [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 622

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/618 (54%), Positives = 448/618 (72%), Gaps = 1/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DV+VIGGGHAGCEAA+ AA+ GA TAL+TH+  TIG+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MEHSFDVVVIGGGHAGCEAASAAARAGARTALVTHRFDTIGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+VADAAGIQFR+LN +KGPAVRGPRTQADR LYR AMQ  I +Q  L+V++
Sbjct: 61  IDALGGLMGQVADAAGIQFRLLNRRKGPAVRGPRTQADRRLYREAMQAAIRAQSGLEVVE 120

Query: 122 GEVAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G+VA     + N ++ IV+ D   + C  VVLTTGTFL G+IHIG  KIPAGRMG+ PS 
Sbjct: 121 GDVADLTLDDANRVTGIVLGDGGTMACRAVVLTTGTFLSGLIHIGDQKIPAGRMGEDPST 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDG+TI W   ++Q  D+  +PFS++T  I NRQI+C
Sbjct: 181 GLSGTLSRLGLTLGRLKTGTPARLDGRTIDWAGLDRQAPDDVPVPFSYLTTTIANRQIDC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRT  ETH II +N+  SA+YSG I   GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL
Sbjct: 241 GITRTTPETHAIIRDNLGRSALYSGQIAGNGPRYCPSIEDKIVKFGDRDGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + D++YPNG+ST+LPE++Q  F+R+IPGLE+V + +PGYAIEYD+++P+EL   L  ++ 
Sbjct: 301 DDDIIYPNGLSTSLPEDVQTLFLRSIPGLERVELRKPGYAIEYDHVDPRELDRRLAVRRA 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGTTGYEEAAAQGL+AG+N+A  +     +   R D+YIGVMIDDLT  GV
Sbjct: 361 EGLFLAGQINGTTGYEEAAAQGLIAGLNAALLAAGSKAVTIGRADAYIGVMIDDLTRTGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+SLR DNAD RLTP+G+ L  I   R+  F          R+ L++
Sbjct: 421 SEPYRMFTSRAEFRLSLRADNADRRLTPLGLSLAIIDAERRTVFEASEAALEAARTQLEA 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             LT        +    DG+ R+A++ LS  D  +  L  + P+  + +  + ER++IE+
Sbjct: 481 STLTPSEAQRHGLPVNLDGRRRSAWQLLSQTDVDLDRLAIVWPELAEVAGPIRERIEIEA 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           +Y  Y  RQ  + + ++ +EKR +P D +Y ++  LSNEL++KL+  +P ++ +A  I+G
Sbjct: 541 AYDVYLDRQRKDQERLRRDEKRALPADLNYMAMVGLSNELRQKLTDRRPASIAEAEAIDG 600

Query: 601 MTPAALNLLLIYIKKNTV 618
           MTPAAL ++L+ +++  +
Sbjct: 601 MTPAALAIILVALRRAEI 618


>gi|260910778|ref|ZP_05917430.1| glucose-inhibited division protein A [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635100|gb|EEX53138.1| glucose-inhibited division protein A [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 623

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/620 (40%), Positives = 361/620 (58%), Gaps = 9/620 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAGCEAA  A +LGA T LIT   + I  MSCNPA+GG+ KG +VRE+DA
Sbjct: 4   KYDVLVIGGGHAGCEAACAATRLGAKTCLITMDMNKIAQMSCNPAVGGIAKGQIVREVDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG + D+  IQFR+LN  KGPAV  PR Q DR  Y    +  + S E LD+ Q + 
Sbjct: 64  LGGEMGIITDSTSIQFRMLNKGKGPAVWSPRAQCDRAKYITKWRETLDSIEGLDIWQDQA 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E      +     +  R  ++V+T GTFL G++H+GK++IP GR  +        
Sbjct: 124 DELLVENGTAVGVRTLWGAEFRAKSIVITAGTFLNGLMHVGKVQIPGGRCAEPAVYRFSE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  +      R+KTGTP R+D +T+ +++ E+Q  +     FS+M    T  Q+ C    
Sbjct: 184 SITRHGIAVDRMKTGTPVRIDARTVHFEEMERQDGEVDFHQFSYMGTPRTLTQLPCWTFY 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  E H+ + E I  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG NT  
Sbjct: 244 TTQEAHQALQEGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHLLFLEPEGENTAE 303

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S+++P ++Q   +R IP L      RPGYAIEYDY +P  L  +LE+K I GLF
Sbjct: 304 MYLNGFSSSMPLDVQLNALRKIPALRDAKAFRPGYAIEYDYFDPTLLHASLESKIIKGLF 363

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGTTGYEEAA QGLVAGIN+A   N  +     R +SYIGV+IDDLT+KGV EPY
Sbjct: 364 FAGQVNGTTGYEEAAGQGLVAGINAAIACNGGEPFVMKRDESYIGVLIDDLTTKGVDEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR D+AD RLT    K+G    +R   + +  +    +    ++  + 
Sbjct: 424 RMFTSRAEYRILLRQDDADARLTERAYKIGLASRQRYDHWIEKKESIERIIRFCETSTVR 483

Query: 485 SKNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLVIER 535
           +  +++            +    + ++ P  ++Q L  + P+ +            ++E 
Sbjct: 484 ANYINAALERWGTTPLNGSVKLADLIARPQLNVQGLAEVLPELKAVIEQTPNRKEEIVEA 543

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y  Y  R+ I A +++  E   I   F+Y  L  +S E ++KL+ + P  L QA
Sbjct: 544 AEIKMKYKGYIEREKIVADKMRRLENIRIKGHFNYEELHEISTEGRQKLARINPETLAQA 603

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +N+LL+ + +
Sbjct: 604 SRIPGVSPSDINVLLVLMNR 623


>gi|41058589|gb|AAR99281.1| glucose-inhibited division protein A [Candidatus Blochmannia
           nearcticus]
          Length = 590

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/584 (45%), Positives = 358/584 (61%), Gaps = 7/584 (1%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G MSCNPAIGG+GKGHLV+EIDA+ GLM    D +GIQFR LN  KG AVR  R QAD+ 
Sbjct: 1   GQMSCNPAIGGIGKGHLVKEIDAMGGLMACAIDESGIQFRKLNSSKGVAVRATRAQADKI 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG 160
           LYR  ++ ++  QE L ++Q  V     E N I  ++  +     R  +VVLTTGTFL G
Sbjct: 61  LYRQVIRNKLEYQECLLIVQASVEDLIIENNKIVGVITPKIGMKFRAMSVVLTTGTFLNG 120

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
            I+IG      GR GD  S+SL +    +     GRLKTGT  R+  K + +D   KQ +
Sbjct: 121 RIYIGLNNFSGGRAGDIGSSSLLSIRLKELSSRVGRLKTGTSPRIHSKGVNFDCLHKQHS 180

Query: 220 DERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
           D  +  FSF+   +   RQ+ C IT TN +TH I+  N+  S +YSG +K   PRYCPSI
Sbjct: 181 DNPVPVFSFIGSVEQHPRQVPCYITHTNSKTHDIVRSNLHQSPMYSGLMKGVSPRYCPSI 240

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           EDK+VRF +R+ HQIFLEPEGL T  +Y NGIST+LP  IQ Q I+++ GLE  NIIRPG
Sbjct: 241 EDKVVRFSDRSAHQIFLEPEGLTTPEIYLNGISTSLPFNIQIQMIKSVQGLENANIIRPG 300

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   + 
Sbjct: 301 YAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQDKEG 360

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
               R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  + G I E
Sbjct: 361 WYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTAIAYRFGLIDE 420

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSI 515
              + F +  ++       L++  +   ++ +  ++              E L  P+ S 
Sbjct: 421 FLWENFCRKKEKIEKELQRLRNTYIAPHSVDAKQLNALLKTPLTHEINGAELLKRPEISY 480

Query: 516 QNLFSI-CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
             L  +      +    V ++++I+  Y  Y  RQ  +       E  L+P + D++ + 
Sbjct: 481 IKLSQLSVFGLSELDKQVFDQIEIQIKYEGYIRRQQEDIDRYLCNENTLLPINMDFNIVS 540

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            LS E+ EKL+  +P ++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 GLSREVIEKLNQCRPCSIGQASRIPGITPAAISNLLVWLKKQGL 584


>gi|148284568|ref|YP_001248658.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Orientia tsutsugamushi str. Boryong]
 gi|166222713|sp|A5CDS8|MNMG_ORITB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146740007|emb|CAM80083.1| glucose-inhibited division protein A [Orientia tsutsugamushi str.
           Boryong]
          Length = 622

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/589 (50%), Positives = 395/589 (67%), Gaps = 2/589 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G   ALIT K   +G M CNPAIGG GKGH+V+E+DALDGL+G +AD AGI +++LN 
Sbjct: 24  RIGVKVALITLKPENLGEMPCNPAIGGRGKGHIVKEVDALDGLIGYIADQAGIHYKMLNH 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV GPR Q DR LY+ AM   I++  NL  I   V       N ++++++ +   I
Sbjct: 84  TKGPAVWGPRAQIDRALYKSAMYSTIMNYPNLTTIFASVEDIKVIANKVTAVIV-NGKEI 142

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
            C  V+LTTGTFL GVIH GK +I AGR+G++ S  L N+  +     GRLKTGTP R+D
Sbjct: 143 YCQKVILTTGTFLSGVIHRGKEQIKAGRLGENASYGLSNTLSELGLRLGRLKTGTPPRID 202

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +TI + K E+Q  D    PFS +T K+   QI+C ITRTN  TH+II EN+  SA+YSG
Sbjct: 203 SRTIDYSKLEEQPGDLIPTPFSEITKKVLVPQIKCYITRTNEITHKIIKENLHLSAMYSG 262

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI+RF     HQIFLEPEGLN++ +YPNGIST+LP ++Q   IRT
Sbjct: 263 QIQGTGPRYCPSIEDKIIRFSHNASHQIFLEPEGLNSNTIYPNGISTSLPSDVQENMIRT 322

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   II  GYAIEYDY++P++L  +LE K + GL+LAGQINGTTGYEEAA QG++A
Sbjct: 323 IEGLENCKIIAYGYAIEYDYVDPRQLKHSLEVKSVGGLYLAGQINGTTGYEEAAGQGIMA 382

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    K D     RTD+YIGVMIDDLT+ G+ EPYRMFTSR+EYR+S+R DNAD R
Sbjct: 383 GINAALAVKKQDPFILDRTDAYIGVMIDDLTN-GIDEPYRMFTSRSEYRLSIRADNADQR 441

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  + LGC+ + RQ+ F K + + N LR  ++SL +T K L +      Q+G  RTA+
Sbjct: 442 LTPKAIDLGCVSQLRQEVFQKKLSKLNTLRDYVQSLTITPKQLQNCGYQISQNGIARTAF 501

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             L  P+F I  +  I P+  ++ + ++  L  ES Y  Y  RQ  + +  K EE   IP
Sbjct: 502 SLLGLPNFGINIVKDIYPELNRYDNNLLLLLTYESKYHVYLERQKEDIELFKQEETYQIP 561

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +D +Y  +P+LS E++EKL   +P  +  A  I G+TP+A+  ++I++K
Sbjct: 562 QDLNYDQIPSLSIEVREKLKQYQPETIRAAKHINGVTPSAIMAIIIFLK 610


>gi|163851010|ref|YP_001639053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium extorquens PA1]
 gi|163662615|gb|ABY29982.1| glucose inhibited division protein A [Methylobacterium extorquens
           PA1]
          Length = 624

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/599 (56%), Positives = 425/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ +++ D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVRSGRVAGVMLADGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEEPALGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSVRAAHFAASQGALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A++ LSYP+   + L ++ P+       V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFQILSYPEIGWERLAAVWPELAAVPPRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRAKLDGVRPTTLGQAARIEGVTP 605


>gi|303238024|ref|ZP_07324567.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella disiens FB035-09AN]
 gi|302481814|gb|EFL44866.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella disiens FB035-09AN]
          Length = 625

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/623 (40%), Positives = 358/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDV+VIGGGHAGCEAA  AA +GA   L+T   + I  MSCNPA+GG+ KG +VRE
Sbjct: 3   ITFKYDVLVIGGGHAGCEAATAAANIGAKVCLVTMDMNKIAQMSCNPAVGGIAKGQIVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPAV  PR Q DRE +    +R +   +NLD+ Q
Sbjct: 63  IDALGGQMGIVTDATAIQFRMLNRSKGPAVWSPRAQCDREKFISEWKRTLDHTDNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +      +      +       +    +V+T GTFL G++HIG+ ++  GR  +   ++
Sbjct: 123 DQADELIVKNGKAIGVKTIWGIDLYAQAIVVTAGTFLNGLMHIGRKQVEGGRCAEPAVHN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++     R+KTGTP R+D +++ ++  E Q  +     FSF+ +     Q+ C 
Sbjct: 183 FAESIARWGIRKERMKTGTPVRIDKRSVHFEDMEAQPGESDYHQFSFIGNYRKLPQLPCW 242

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H I+   +  S +++G I+S GPRYCPSIE K+V F ++N H +FLEPEG++
Sbjct: 243 TCNTNEEAHEILRRGVADSPLFNGQIQSTGPRYCPSIETKLVTFPDKNTHPLFLEPEGVD 302

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P EIQ   +R IP L    + RPGYAIEYDY +P +L P+LE+K I+
Sbjct: 303 TNEMYLNGFSSSMPWEIQLAALRKIPALRDAKMYRPGYAIEYDYFDPTQLKPSLESKIIA 362

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG+VAGIN+A   +        R +SYIGV+IDDLT+KGV 
Sbjct: 363 HLFLAGQVNGTTGYEEAGGQGMVAGINAAMLCSGNQPFIMKRDESYIGVLIDDLTTKGVD 422

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R   +                 
Sbjct: 423 EPYRMFTSRAEYRILLRQDDADARLTERAYEIGIATKERYDWWIIKKNHIERTIDYCNKN 482

Query: 482 VLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            +    ++    SI       +    + ++ P  +I  L     + ++           +
Sbjct: 483 AVKPHEINGYLESIGSSPIRGSVKISDLIARPGVNIHALSEHISELKEIINAAPNRKEEI 542

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ I A ++   E   I   FDYS++  LS E ++KL  ++P  L
Sbjct: 543 TEAAEIKIKYKGYIERERIFADKMHRLEDIKIKGHFDYSTIHDLSTECRQKLERIQPETL 602

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 603 AQASRIPGVSPSDINVLLVLMGR 625


>gi|86747517|ref|YP_484013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodopseudomonas palustris HaA2]
 gi|123409026|sp|Q2J358|MNMG_RHOP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|86570545|gb|ABD05102.1| glucose inhibited division protein A [Rhodopseudomonas palustris
           HaA2]
          Length = 626

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/623 (53%), Positives = 440/623 (70%), Gaps = 1/623 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIVIGGGHAGCEAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRNSYDVIVIGGGHAGCEAAAAAARLGAATALVTHRFATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLMGRVADA GIQFR+LN +KGPAVRGPR QADR+LY  AMQ  I +  NL VI+
Sbjct: 61  VDALDGLMGRVADAGGIQFRMLNRRKGPAVRGPRAQADRKLYAAAMQAAIRATANLRVIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      E   ++ I + D   +    VV+TTGTFLRG+IH+G+   PAGR+ ++P+  
Sbjct: 121 GEADTLLNEAGRVTGIRLADGRELVAGAVVITTGTFLRGLIHLGEQCWPAGRIDEAPALG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  SF       GRLKTGTP RLDG+TI W   E Q  D+   PFS +T  IT  QIECG
Sbjct: 181 LSASFEALGLALGRLKTGTPPRLDGRTIDWGAVEMQPGDDPPEPFSVLTPAITTPQIECG 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRT   TH +I  N+  S +YSG I+S GPRYCPSIEDKIV+FG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTLPATHEVIRANVHRSPMYSGQIQSSGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
              VYPNGIST+LPEE+Q   + TIPGLE+  ++RPGYAIEYD+++P+EL PTL+TK++ 
Sbjct: 301 DPTVYPNGISTSLPEEVQRAILATIPGLERTVMLRPGYAIEYDHVDPRELEPTLQTKRLR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+LAGQINGTTGYEEAAAQGLVAG+N+A  +   + + F R D Y+GVMIDDL ++G+ 
Sbjct: 361 GLYLAGQINGTTGYEEAAAQGLVAGLNAALAAGGGEGVVFDRADGYLGVMIDDLVTRGIS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR++LR DNAD RLT  G+ LGC+G  R       +      ++L +SL
Sbjct: 421 EPYRMFTSRAEYRLTLRADNADQRLTDKGLALGCVGTERAAFHRGKMAALAEAKALAQSL 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T    +   +S  +DG+ R+A++ LSYP+     + +I P+    S  +   ++I++ 
Sbjct: 481 AITPNEAARHGLSLNRDGQRRSAFDLLSYPEIEWPQVRAIWPELAAVSPSIAGHVEIDAK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ+ +    + +E  L+  D DY+ +P LSNE + +L   +P  + QA +++G+
Sbjct: 541 YAVYLERQVADVAAFRRDEGLLL-TDVDYAQVPGLSNEARGRLERHRPRTVGQAGRLDGI 599

Query: 602 TPAALNLLLIYIKKNTVKLNEIV 624
           TPAAL +L  Y+++   K   +V
Sbjct: 600 TPAALGILAAYLRREARKRPAVV 622


>gi|125808684|ref|XP_001360830.1| GA18299 [Drosophila pseudoobscura pseudoobscura]
 gi|54636002|gb|EAL25405.1| GA18299 [Drosophila pseudoobscura pseudoobscura]
          Length = 659

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/627 (44%), Positives = 409/627 (65%), Gaps = 20/627 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 30  YDVVVIGGGHAGTEASAAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 89

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ GR  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S +NL++    V 
Sbjct: 90  DGVCGRCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKKAVQKELHSTQNLEIRAAAVD 149

Query: 126 GFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E         + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGRMGD+P+ 
Sbjct: 150 NILIEDEQHQHRRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRMGDAPAK 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
           +L  +  +  F  GRLKTGTP R+   ++ + + E+   D+   PFSF+   +      Q
Sbjct: 210 ALGEAIDRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEGDDPPTPFSFLNSHVWLPAKEQ 269

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T    + I+  N+  +   + +I   GPRYCPSIE KI+RFG R  HQ++LEP
Sbjct: 270 LPCHLTYTTPLVNDIVRNNLHVNRHVTEEI--TGPRYCPSIESKILRFGAR-VHQVWLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ +VYP GIS  LP E Q + +  I GLE   +++PGY +EYD+I+P+ELFPTLET
Sbjct: 327 EGLDSPLVYPQGISCTLPHEQQVELVHAIKGLEHAEVVQPGYGVEYDFIDPRELFPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDDL 415
           K++ GLF AGQINGTTGYEEAAAQG+VAG N+A K+   D   +  SRT+ YIGV++DDL
Sbjct: 387 KRVPGLFFAGQINGTTGYEEAAAQGIVAGANAAGKTRHADGRQLTISRTEGYIGVLVDDL 446

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           TS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E R + F +  +      
Sbjct: 447 TSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTNKGYEYGLVSENRFRHFKQAEERLQSGM 506

Query: 476 SLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF---S 529
             L+ L   S     S  +   +    +TA++ L+ P  + ++  L ++ P    +    
Sbjct: 507 EALRGLRKHSNYWRQSLDLPTSKASVEKTAFDMLAIPADNITVDKLINLFPTELSWLRDD 566

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILK 588
           + + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S + +LSNE ++KLS+++
Sbjct: 567 NNLAERLKIEALYSFFVEEQQRDVEDVRREERLAIPADIDYFSKVLSLSNEERQKLSLIQ 626

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKK 615
           P  +  AS+I+G+TP+ +  ++ Y+KK
Sbjct: 627 PQTIAAASRIQGVTPSTIVRIMKYVKK 653


>gi|315606900|ref|ZP_07881907.1| glucose inhibited division protein A [Prevotella buccae ATCC 33574]
 gi|315251408|gb|EFU31390.1| glucose inhibited division protein A [Prevotella buccae ATCC 33574]
          Length = 623

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/624 (41%), Positives = 368/624 (58%), Gaps = 10/624 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI + YDVIVIGGGHAGCEAA  AA +GA T LIT   + I  MSCNPA+GG+ KG +VR
Sbjct: 1   MIYK-YDVIVIGGGHAGCEAATAAAHMGAHTCLITMDMNKIAQMSCNPAVGGIAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLDV 
Sbjct: 60  EIDALGGQMGLVTDNTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTMLDRTDNLDVW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q +      E      +        R  +V++T GTFL G++H+G+ KI  GR  +   +
Sbjct: 120 QDQADELIVENGEAVGVTTIWGVAFRAKSVIVTAGTFLNGLMHVGRHKIEGGRCAEPAVH 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
               S  +    + R+KTGTP R+D +++ ++  E Q  D     FS+M  +   +Q+ C
Sbjct: 180 YFTESITRHGIVSARMKTGTPVRIDKRSVHFEDMEIQQGDSGFHRFSYMGQERKLKQLPC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H ++   +  S +++G I+S GPRYCPSIE K+V F +++ H +FLEPEG 
Sbjct: 240 WTCYTNGEVHEVLKGGLADSPLFNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGE 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y NG S+++P +IQ + I  IP L    I RPGYAIEYDY +P +L  +LE+K +
Sbjct: 300 NTNEMYLNGFSSSMPLDIQLEAIHKIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIL 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQ+NGTTGYEEA  QGLVAG+N+A   N  +    +R +SYIGV+IDDLT+KGV
Sbjct: 360 SGLFFAGQVNGTTGYEEAGGQGLVAGVNAAIHCNGGEPFVMNRDESYIGVLIDDLTTKGV 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD+RLT     LG    +R   + +  +    +    + 
Sbjct: 420 DEPYRMFTSRAEYRILLRQDDADSRLTKKAYNLGISTRKRYDWWLEKKEAIERIIRFCED 479

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSL 531
             +  +  N    ++            + ++ P+ ++QNL  I P  ++           
Sbjct: 480 TPINKEHINPQLEALGTTPLRAGCKLVDLVTRPNLTLQNLSEIIPSLKEILESPKNRKEE 539

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E  +I+  Y  Y  R+ I A ++   E   I   FDY++L  +S E ++KLS ++P  
Sbjct: 540 ITEAAEIKMKYKGYIDRERIVADKMHRLENIKIKGRFDYATLHEISTEGRQKLSSIEPET 599

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           L QAS+I G++P+ +N+LL+ + +
Sbjct: 600 LAQASRIPGVSPSDINVLLVLLGR 623


>gi|41058553|gb|AAR99257.1| glucose-inhibited division protein A [Candidatus Blochmannia
           laevigatus]
          Length = 590

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/584 (45%), Positives = 357/584 (61%), Gaps = 7/584 (1%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QAD+ 
Sbjct: 1   GQMSCNPAVGGVGKGHLVKEIDAMGGSMACAIDQSGIQFRVLNSSKGAAVRATRAQADKI 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG 160
           LYR  ++  +  Q+ L VIQ  V      +N I  +V  +     R ++VVLTTGTFL G
Sbjct: 61  LYRQVIRNILEYQKFLLVIQASVEDLIVSRNKIVGVVTPKLGMKFRGTSVVLTTGTFLNG 120

Query: 161 VIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
            IHIG      GR GD+ S+SL      +     GRLKTGT  R+  K I +D    Q++
Sbjct: 121 KIHIGMNNFRGGRSGDAESSSLLSERLKELSLKVGRLKTGTSPRVHAKGINFDALRAQYS 180

Query: 220 DERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
           D+ +  FSF+     +  Q+ C IT TN +TH I+  N+  S +Y+G IK   PRYCPSI
Sbjct: 181 DDPVPVFSFIGSTKQHPTQVPCYITHTNNKTHEIVRSNLHQSPMYTGLIKGISPRYCPSI 240

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           EDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   IIRPG
Sbjct: 241 EDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQIQMIKSIQGLENAYIIRPG 300

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           YAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   + 
Sbjct: 301 YAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKEG 360

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
               R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I E
Sbjct: 361 WYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGLIDE 420

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSI 515
            R K F    +     R  L++  +     +++  +   K          + L   + + 
Sbjct: 421 LRWKVFCCKKENIEKERQRLRNTYIFPYSADIAQLNNFLKAPLIHEANGXDLLRRXEINY 480

Query: 516 QNLFSICPDARK-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
             L  +           V E+++I+  Y  Y   Q  E +   + E  L+P D D++ + 
Sbjct: 481 XXLSQLSTFGSSVLDRQVFEQIEIQIKYEGYIRHQQEEIERHIYNENTLLPTDIDFNIVS 540

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 GLSKEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKKQGL 584


>gi|237752671|ref|ZP_04583151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376160|gb|EEO26251.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 629

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/628 (42%), Positives = 361/628 (57%), Gaps = 13/628 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EA+ V+A++G  T L+T     IG+ SCNPA+GGLGKGHLV+EIDA
Sbjct: 2   EYDVIVIGGGHAGIEASIVSARMGCKTLLLTMLVEQIGAASCNPAVGGLGKGHLVKEIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG + D +GIQFR LN  KGPAVRG R Q D + Y++  +      +NL+V Q  V
Sbjct: 62  LGGVMGYITDKSGIQFRTLNASKGPAVRGTRAQIDMDRYKIIARNLCYHTKNLEVSQQIV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK+ +  +      + +   VVLTTGTFLRG IHIG+     GR G+ P+  L  
Sbjct: 122 ESLVLEKDSVIGVKTTIGKVYQAKKVVLTTGTFLRGKIHIGENTSNNGRAGEPPAMELGE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQI 238
           +  +   D G LKTGT AR+   +I ++  EK + D     FS  T      +     Q+
Sbjct: 182 NLRELGLDVGILKTGTCARIKASSINFEILEKHYGDMPAPFFSKKTQKELGENPFNPMQL 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH II EN   + +++G I+  GPRYCPSIEDK+ RF ++  HQ+FLEP+
Sbjct: 242 PCYVTYTNAKTHAIIRENFHRAPMFTGQIEGIGPRYCPSIEDKVNRFSDKERHQLFLEPQ 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L  +  Y NG++++LP ++Q   I +I GLE   I+R GYAIEYDYINP EL  TLETK
Sbjct: 302 TLEANEYYINGLTSSLPFDVQEAMIHSIEGLENAEIVRYGYAIEYDYINPTELKHTLETK 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI  L+ AGQINGTTGYEEA AQG+ AGIN+A      + I   R ++YIGVM+DDL +K
Sbjct: 362 KIRNLYCAGQINGTTGYEEAGAQGIFAGINAALSVKGKEQITLKRNEAYIGVMVDDLVTK 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMF+SRAEYR+ LR  NA  RL  +   LG + E   K   K           L
Sbjct: 422 GTKEPYRMFSSRAEYRLLLREGNAIFRLGDLAYSLGLMEEEEYKELQKDKVAIKEGLEWL 481

Query: 479 KSLVLTSKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSL 531
           K+  +T   L      SI  ++          +    F +  L  I          +S  
Sbjct: 482 KNTEVTPNALVLKFLNSICEEKISDKTNWGTIVGRRSFDVPKLLKIQEVENCPFASYSER 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
            +E + +E+ Y  Y  +Q    + +       IP+DF +  +P LS E+ EKL    P +
Sbjct: 542 ALEEILVEAKYFNYIQKQQNMIENMDKMLSIEIPQDFVFDKIPGLSLEVIEKLKKFNPKS 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVK 619
           L +AS+I G+TPA+L +L +YI     K
Sbjct: 602 LFEASEISGVTPASLEVLQLYIHLYHKK 629


>gi|88608296|ref|YP_506583.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia sennetsu str. Miyayama]
 gi|123491615|sp|Q2GD63|MNMG_NEOSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88600465|gb|ABD45933.1| glucose inhibited division protein A [Neorickettsia sennetsu str.
           Miyayama]
          Length = 627

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/610 (46%), Positives = 396/610 (64%), Gaps = 9/610 (1%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EAAA +A+LG  T L+T+    IG MSCNPAIGG+GKG++V+E+DA+ G
Sbjct: 4   VVVIGGGHAGVEAAAASARLGVETLLVTNNVMNIGEMSCNPAIGGIGKGNVVKEVDAMGG 63

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +M    D A I  R+LN  KG AV GPR QADR+LY+ A+   +   E L +++  +   
Sbjct: 64  VMALAIDRASIHSRMLNRSKGAAVWGPRAQADRKLYKCAVLELLTKYEKLSILEDHITDL 123

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E + +  +V +    I+CS  VLTTGTFL G+I  G  ++  GR G+  S  L N+  
Sbjct: 124 IIENDRLMGVVGEKTGTIKCSAAVLTTGTFLNGIIQTGSERVEGGRFGEKASQCLGNTLR 183

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNL 247
           +  F   RL+TGTPARL   +I +    +Q  D   IPFS+M  +IT  Q+ C IT TN 
Sbjct: 184 RH-FKISRLRTGTPARLYKDSINYSALVEQPGDSPPIPFSYMNTEITVPQVSCYITHTNG 242

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  ++K SAI +G + + GPRYCPSIEDK+VRF E++ HQIFLEPEGL++++VYP
Sbjct: 243 KTHEIIRNSLKFSAIRNG-VSARGPRYCPSIEDKVVRFAEKDSHQIFLEPEGLDSELVYP 301

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIS +LP+EIQ +FIR+I GLEK ++ R  Y IEYDYI+P+EL  TLE+K++  L+ AG
Sbjct: 302 NGISNSLPKEIQEEFIRSIAGLEKASVARYAYTIEYDYIDPRELRSTLESKRVKNLYFAG 361

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD-LTSKGVLEPYRM 426
           QINGTTGYEEAA QG+VAG N+A        +  SR++ YIGVMIDD +T     EPYR+
Sbjct: 362 QINGTTGYEEAAGQGIVAGSNAAGAG-----LIISRSEGYIGVMIDDLITLGTNGEPYRL 416

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR++LR DNAD RLT    ++G + E R   + K    ++  +S L  L  T  
Sbjct: 417 FTSRAEYRLNLRSDNADFRLTEKAYRVGLVDEERYAAYKKKYDTFHNYKSKLNELSTTPY 476

Query: 487 NLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
            L+    IS  QDG  ++A+  ++ P F  ++L  I P+  +      E L I + Y  Y
Sbjct: 477 ELAKIEGISIAQDGVRKSAWNLITQPLFVFEDLLRIWPELSEVPEKYREMLTINARYEPY 536

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + K ++  EK +IP +FD+ ++ +LS+E+ EKL  ++P  L QA +I G+TPAA
Sbjct: 537 LLRQEQDVKLLRNNEKVVIPSNFDFGAIKSLSSEVIEKLEAVRPETLAQAKRISGVTPAA 596

Query: 606 LNLLLIYIKK 615
           +  +LI++++
Sbjct: 597 IVSILIHLRR 606


>gi|41058582|gb|AAR99276.1| glucose-inhibited division protein A [Candidatus Blochmannia
           novaeboracensis]
          Length = 593

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/587 (45%), Positives = 363/587 (61%), Gaps = 7/587 (1%)

Query: 39  STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R QA
Sbjct: 1   DTLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQA 60

Query: 99  DRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTF 157
           D+ LYR A++  +  Q+ L VIQ  V      +N I  ++  +       ++VVLTTGTF
Sbjct: 61  DKILYRQAIRNILEYQKFLLVIQASVEDLIVSRNRIVGVITPKLGMKFSGTSVVLTTGTF 120

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           L G IHIG      GR GDS S+SL +    +      RLKTGT  R+  K I +D    
Sbjct: 121 LNGKIHIGMNNFRGGRSGDSESSSLLSERLKELSLQVNRLKTGTSPRVHTKGINFDSLRA 180

Query: 217 QFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           Q++D+ +  FSF+ + K+   Q+ C IT TN +TH II  N+  S +Y+G IK   PRYC
Sbjct: 181 QYSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIIRSNLHQSPMYTGVIKGIAPRYC 240

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q + I++I GLE  +I+
Sbjct: 241 PSIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMKMIKSIQGLENADIV 300

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RPGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S  
Sbjct: 301 RPGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQN 360

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG 
Sbjct: 361 KEGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLGL 420

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFK-QDGKTRTAYEFLSYPD 512
           I E R K F    +     R  L++  +     +++  +   K          + L  P+
Sbjct: 421 IDESRWKDFCCKKENIEKERQRLRNTYVFPYSSDVAQLNNFLKTPLIHEANGEDLLRRPE 480

Query: 513 FSIQNLFSICPDARK-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
            +   L  +           V E+++I+  Y  Y   Q  E K   + E  L+P D D++
Sbjct: 481 INYTKLSQLSTFGPSVLDRQVFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDIDFN 540

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 IVSGLSKEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKKQGL 587


>gi|325281348|ref|YP_004253890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Odoribacter splanchnicus DSM 20712]
 gi|324313157|gb|ADY33710.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Odoribacter splanchnicus DSM 20712]
          Length = 627

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/621 (42%), Positives = 364/621 (58%), Gaps = 10/621 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAA  AA LG+ T LIT   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 7   DYDVIVVGAGHAGCEAACAAAHLGSHTLLITLDMNKIAQMSCNPAIGGIAKGQIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GL G V D + IQFR+LN  KGPA+  PR+Q DR  +    + ++   + LD+ Q +V
Sbjct: 67  LGGLTGIVTDQSSIQFRMLNRSKGPAMWSPRSQCDRMKFSANWRYQLEHTDGLDMWQDDV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +   +  +      +     V+LT GTFL G++HIG++    GR+ +  S+ L  
Sbjct: 127 VELVVKDGQVYGVKTALGVVFNAKRVILTNGTFLNGLMHIGRVSFEGGRISEPASHGLTA 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI--ECGI 242
                 F+TGR+KTGTP R+DGK+I + K  +Q  D     FS++     N  I   C +
Sbjct: 187 QLCSLGFETGRMKTGTPVRIDGKSIDFSKLTEQGGDNDFHCFSYLHYDYRNTLIQRPCYM 246

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN   H  + +    S +++G I+S GPRYCPSIE K+  F +R  H +FLEPEG  T
Sbjct: 247 AYTNEAVHHALRQGFTDSPLFNGTIQSVGPRYCPSIETKLNTFADRTSHHLFLEPEGETT 306

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              Y NG S++LP ++Q   +R I G E V I RPGYAIEYDY  P +L+ TLETK I G
Sbjct: 307 TEFYLNGFSSSLPWDVQLTGLRLIEGFENVRIFRPGYAIEYDYFPPTQLYHTLETKLIQG 366

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGTTGYEEAAAQGL+AGIN+    +       +R ++YIGV+IDDL +KGV E
Sbjct: 367 LYFAGQINGTTGYEEAAAQGLMAGINAHLSLHSSVEFVLNRDEAYIGVLIDDLVTKGVDE 426

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSRAEYRI LR D+AD RLTP G ++G +   R K +   I++ + L   +K+  
Sbjct: 427 PYRMFTSRAEYRILLRQDDADMRLTPKGFQIGLVTNNRHKIYLDKIEKRDLLIDFIKNFS 486

Query: 483 LTSKNLSSTSISFKQDGKT--RTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIE 534
           +    ++S  +S             + LS P   +  L  + P    F         +IE
Sbjct: 487 VKPDEINSFLLSLNTAPIRQGMKLVDILSRPQVGLLALIDVLPSLNNFIGEFVLRDEIIE 546

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             +I   Y+ Y  R+ + A ++   E  +I   F+Y  L  LS E ++KLS ++P  + Q
Sbjct: 547 AAEISIKYSGYIERERMLADKLSRLENLVIAGKFNYEELTNLSIEARQKLSKIQPRTIGQ 606

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           AS+I G++PA +N+LLI + +
Sbjct: 607 ASRISGVSPADINVLLILMGR 627


>gi|110639868|ref|YP_680078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966492|sp|Q11PC8|MNMG_CYTH3 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110282549|gb|ABG60735.1| glucose-inhibited division protein A [Cytophaga hutchinsonii ATCC
           33406]
          Length = 621

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/618 (42%), Positives = 369/618 (59%), Gaps = 7/618 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAGCEAAA AA +G+   L T    TI  MSCNPA+GG+ KG +VREIDA
Sbjct: 4   EYDVIVVGAGHAGCEAAAAAANMGSKVLLATMNMQTIAQMSCNPAMGGVAKGQIVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GL G V+D + IQFR+LN  KGPA+  PR+Q DR ++    + ++ +  N+D  Q  +
Sbjct: 64  LGGLSGIVSDKSMIQFRMLNRSKGPAMWSPRSQNDRHMFAWEWRMQLEALPNVDFWQEMI 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +G   +   +  +       I C +VVLT GTFL G+IHIG+ K+  GR G+  +  +  
Sbjct: 124 SGLIVKNGKVCGVRTGLGIEIPCKSVVLTNGTFLNGIIHIGEKKLGGGRTGEKAATGITE 183

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
             ++  F++GR+KTGTP R+DG+++ +   ++Q  DE    FS+     +  +Q  C IT
Sbjct: 184 QLVELGFESGRMKTGTPPRVDGRSLDYSVMQEQEGDENPSKFSYSKQTTSLTKQRSCHIT 243

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN   H  + E    S +++G IK  GPRYCPS+EDKI RF E+  HQIF+EPEG NT 
Sbjct: 244 YTNQAVHDTLKEGFDRSPMFTGRIKGLGPRYCPSVEDKINRFAEKERHQIFVEPEGWNTV 303

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY NG ST+LPE++Q++ IR I G E   + RPGYAIEYD+  P +L  +LET+ +  L
Sbjct: 304 EVYVNGFSTSLPEDVQYKAIRKIAGFENAKMFRPGYAIEYDFFPPTQLQLSLETRLVKNL 363

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAA QGL+AGIN+ + +   + +   R+++YIGV+IDDL +KG  EP
Sbjct: 364 FFAGQINGTTGYEEAACQGLMAGINAHKAAKDHEALILKRSEAYIGVLIDDLVNKGTEEP 423

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYRI LR DNAD RLTPIG ++G   E R +           L   +K+  +
Sbjct: 424 YRMFTSRAEYRILLRQDNADLRLTPIGYEIGLATEERYQDMLLKKHNSEKLVEEIKNTKI 483

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----ARKFSSLVIERLQ 537
             +  +            +    Y  L  P+  +        +       ++   IE+  
Sbjct: 484 KPETANEILEENGSAPIKEKVVLYNLLKRPNMEVSLFAEKVEEIKTLIEPYTQEEIEQAM 543

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y  Y  ++   A ++   E   +  DFDY  + ALS E +EKLS LKP  L QAS+
Sbjct: 544 IEVKYRDYIDKEEQMALKMTQLENMALNPDFDYKKIQALSLEAREKLSKLKPATLGQASR 603

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+ PA +++L+IY+ +
Sbjct: 604 ISGVNPADISILMIYMGR 621


>gi|110598308|ref|ZP_01386583.1| glucose inhibited division protein A [Chlorobium ferrooxidans DSM
           13031]
 gi|110340116|gb|EAT58616.1| glucose inhibited division protein A [Chlorobium ferrooxidans DSM
           13031]
          Length = 621

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/620 (41%), Positives = 366/620 (59%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA+ G S  LIT   S+I  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAALAAARSGCSCLLITTDLSSIARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R  DA GIQFR+LN  KGPA+  PR QAD+ +Y L M++ I  + N+D++Q  V 
Sbjct: 62  GGEMARAIDANGIQFRMLNRSKGPAMHSPRAQADKAMYSLYMRKVIERETNIDLLQDTVV 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG-DSPSNSLFN 184
           G  + + +     +    +I     +L  GTFL G+IHIG      GR   + P   L  
Sbjct: 122 GIESHEGVFQGARISSGRVIAGGAAILCCGTFLNGLIHIGMNHYDGGRTTAEPPVRGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
             ++  F  GRLKTGTP R+D +++ + + E Q  D     FSF        RQ+ C IT
Sbjct: 182 DLLRLGFVAGRLKTGTPPRIDARSVDYSRVESQQGDAEPSAFSFSKSLDRNRRQVSCYIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+ +    S +++G ++  GPRYCPS+EDKI RF ++  H IFLEPEG++T+
Sbjct: 242 KTTPQTHDILKKGFSRSPLFTGKVQGIGPRYCPSVEDKICRFPDKESHHIFLEPEGIDTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ + +R+IPGL    IIRPGYAIEYDY  P ++  TLETK I  L
Sbjct: 302 EMYVNGFSTSLPEDIQEEGLRSIPGLSNAKIIRPGYAIEYDYFFPYQIKGTLETKLIENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++ K+     I   R+++YIGV+IDD+ +K  LEP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASLKARSRPPINLRRSEAYIGVLIDDIITKETLEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G +           I++ N L++L  +  L
Sbjct: 422 YRMFTSSAEHRLHLRHDNADVRLVTFGYEAGLVQHETYHLCLSKIEKINHLKALCANTRL 481

Query: 484 TSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK------FSSLVIER 535
             + ++       +     +      L  P  +++ + +     R           + E+
Sbjct: 482 QPEEINRMLAKSGYAHVDVSHHVAALLKRPGITLELILAESEAFRNSVHQITIDRSIYEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + I+  Y  Y  R ++ A++I   E   IP  F+Y  +  LSNE KEKL   KP  +  A
Sbjct: 542 VDIDLKYEGYLKRDLLMAEKISRLESLRIPPRFNYDGISGLSNEGKEKLKKHKPETIGVA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L + + +
Sbjct: 602 SRIPGVSPSDISVLTVRLGR 621


>gi|254797057|ref|YP_003081895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia risticii str. Illinois]
 gi|254590303|gb|ACT69665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neorickettsia risticii str. Illinois]
          Length = 627

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/617 (46%), Positives = 400/617 (64%), Gaps = 9/617 (1%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EAAA +A+LG  T L+T+    IG MSCNPAIGG+GKG++V+EIDA+ G
Sbjct: 4   VVVIGGGHAGVEAAAASARLGVETLLVTNSVMNIGEMSCNPAIGGIGKGNVVKEIDAMGG 63

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +M    D A I  R+LN  KG AV GPR QADR+LY+ A+   +   E L +++  V   
Sbjct: 64  VMALATDRASIHSRILNRSKGAAVWGPRAQADRKLYKCAVLGLLTKYEKLSILEDHVTDL 123

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E + +  +V +    IRCS  VLTTGTFL GVI  GK ++  GR G+  S  L N+  
Sbjct: 124 VIENDRLMGVVGEKTGTIRCSAAVLTTGTFLNGVIQTGKERVEGGRFGEKASQCLGNTLR 183

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNL 247
           +  F   RL+TGTPARL   +I +    +Q  D   IPFS+M  +IT  Q+ C IT TN 
Sbjct: 184 RH-FKIARLRTGTPARLYKDSINYSALVEQPGDSPPIPFSYMNTEITVPQVSCYITHTNG 242

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II  ++K SAI +G I + GPRYCPSIEDK+VRF E++ HQIFLEPEGL+++++YP
Sbjct: 243 KTHEIIRNSLKFSAIRNG-ISARGPRYCPSIEDKVVRFAEKDSHQIFLEPEGLDSELIYP 301

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIS +LP+EIQ +FIR+I GLEK  + R  Y IEYDYI+P+EL  TLE+K++  L+ AG
Sbjct: 302 NGISNSLPKEIQEEFIRSIAGLEKARVARYAYTIEYDYIDPRELRSTLESKRVKNLYFAG 361

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD-LTSKGVLEPYRM 426
           QINGTTGYEEAA QG+VAG N+A        +  SR++ YIGVMIDD +T     EPYR+
Sbjct: 362 QINGTTGYEEAAGQGIVAGSNAAGAG-----LIISRSEGYIGVMIDDLITLGTNGEPYRL 416

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR++LRPDNAD RLT    ++G + E R   + K  + ++  +S L  L  T  
Sbjct: 417 FTSRAEYRLNLRPDNADFRLTEKAYRVGLVDEERYAAYRKKYETFHKYKSKLNELSTTPY 476

Query: 487 NLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
            L+    IS  QDG  ++A+  ++ P F  ++L  I  +  +      E L I + Y  Y
Sbjct: 477 ELAKIEGISVAQDGVRKSAWNLITQPLFGFEDLLRIWSELSEVPEEYREMLTINARYEPY 536

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + K ++  EK +IP +FD+ ++  LS+E+ EKL  ++P  L QA +I G+TPAA
Sbjct: 537 LLRQEQDIKLLRNNEKVVIPSNFDFGAIKTLSSEIIEKLQAVRPETLAQAKRISGVTPAA 596

Query: 606 LNLLLIYIKKNTVKLNE 622
           +  +LI++++ + + ++
Sbjct: 597 IVSILIHLRRLSAEGSQ 613


>gi|42520820|ref|NP_966735.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81170589|sp|Q73GE7|MNMG_WOLPM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42410560|gb|AAS14669.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 644

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/614 (49%), Positives = 391/614 (63%), Gaps = 25/614 (4%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  NTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++      
Sbjct: 88  AVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEH 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++F  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYNFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-Y 263
           D  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y
Sbjct: 208 DRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             DI    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q + I
Sbjct: 268 LDDI--IAPRYCPSIEVKVNKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQREMI 325

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           ++I GLE   I+RPGYA+EYDYI+P+ELF TLETKKI GL+ AGQINGTTGYEEAA QG+
Sbjct: 326 KSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKIKGLYFAGQINGTTGYEEAAGQGI 385

Query: 384 VAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           +AGIN+A   S K +     RTDSYIGVMIDDL  KGV+EPYR+FTSRAEYR+++R DNA
Sbjct: 386 IAGINAALSASEKKESFVLHRTDSYIGVMIDDLVIKGVIEPYRLFTSRAEYRLAIRSDNA 445

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G  +  +   R       ++    L   L SL +T + L S  I    DG  +
Sbjct: 446 DRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRK 505

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSS----------------LVIERLQIESSYAAYT 546
           TA + LSYP+     L  I P+    +                  + E ++IE+ Y  Y 
Sbjct: 506 TALDLLSYPNIDWNKLQEIWPELSSVTRWNGKMGHTKADNRAKNEICEAVEIEAKYKPYL 565

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            RQ  + K ++ E    IP +F+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+
Sbjct: 566 IRQEADMKFLREEINTQIPINFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAI 625

Query: 607 NLLLIYIKKNTVKL 620
             +L+Y++    K+
Sbjct: 626 VSILVYLRNRKTKV 639


>gi|205375716|sp|Q3B6Y3|MNMG_PELLD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 621

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/622 (41%), Positives = 379/622 (60%), Gaps = 14/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV G GHAG EAA   ++ G S  L+T   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDVIVAGAGHAGTEAALAVSRSGLSCLLVTTDLNAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN+ KGPA+  PR QADR  Y   M+R +  + NLD++Q  V 
Sbjct: 62  GGEMAKAIDSTGIQFRMLNLSKGPAMHSPRAQADRVAYTAYMKRALEEEVNLDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G    + I+  + +    ++     +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GIEQREGILRGVRLLSGRLVTGRAAILTCGTFLNGLIHIGMDHYPGGRTIAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           + +   F+ GRLKTGTP R+D +++ + + E+Q  DE   PFSF T  +  R Q+ C +T
Sbjct: 182 NLILAGFEAGRLKTGTPPRIDRRSVDYSRVEEQKGDENPPPFSFSTPTLKGRAQLSCYVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            ++  TH I+      S +++G ++  GPRYCPSIEDKI RF +R GH IFLEPEG  T+
Sbjct: 242 HSSERTHEILKTGFDRSPLFTGKVQGIGPRYCPSIEDKIFRFPDRPGHHIFLEPEGFETN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R++ GLE+V +IR GYAIEYDY  P ++  TLETK+I  L
Sbjct: 302 EMYVNGFSTSLPEDIQIDGLRSMKGLEEVKLIRAGYAIEYDYFPPYQIHSTLETKRIRNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+A    K   +   R+D+YIGV++DDL +K + EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLLAGINAAADILKRPALRLKRSDAYIGVLVDDLVTKEMKEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G + +   +R    ++    +++L +   +
Sbjct: 422 YRMFTSSAEHRLMLRHDNADIRLMHFGHQSGLVSDAAMERCRTKMRAIGEIKALTEKTAI 481

Query: 484 TSKNL----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVI 533
            ++ L    S         G+  +A   +  P  S++ L +  P  R+            
Sbjct: 482 PAEVLDSLISKQGQPHAASGQKISAA--IKRPGMSLEILMNSLPPFREALLSISTDKEAH 539

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           ++++I+  Y  Y  R+++ A +I   +   IP +++YS +  LS+E  EKL   +P  L 
Sbjct: 540 QQVEIDLKYEGYLKRELLTADKIARLDALQIPSEYNYSCIKGLSSEGVEKLISHRPETLG 599

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++L+++I +
Sbjct: 600 QASRISGVSPSDISVLMVHIGR 621


>gi|88801788|ref|ZP_01117316.1| glucose-inhibited division protein A [Polaribacter irgensii 23-P]
 gi|88782446|gb|EAR13623.1| glucose-inhibited division protein A [Polaribacter irgensii 23-P]
          Length = 625

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/598 (41%), Positives = 349/598 (58%), Gaps = 8/598 (1%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
            +GA T LIT     I  MSCNPA+GG+ KG +VREIDAL G  G V D   IQF++LN 
Sbjct: 28  NMGAHTLLITTNLQNIAQMSCNPAMGGIAKGQIVREIDALGGYSGIVTDKTAIQFKMLNK 87

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPA+  PR Q+DR  +    +  +   E LD  Q  V     + N I  +       I
Sbjct: 88  SKGPAMWSPRVQSDRMQFSECWRTMLEQTEKLDFYQDSVNELLFDGNKIIGVKTALGLEI 147

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           +  TV++T GTFL G+IHIG+     GR G+  S  +  + +K  F++GR+KTGTP R+D
Sbjct: 148 KAKTVIITAGTFLNGLIHIGEKSFGGGRAGEGASTGITEALVKKGFESGRMKTGTPPRVD 207

Query: 206 GKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
            +++ + K  +Q  DE    FS + + K    Q  C +T TN + H ++ E    S +++
Sbjct: 208 SRSLDFSKMIEQPGDEITEKFSHLPSTKALTEQRSCYLTYTNPKVHELLREGFDRSPMFN 267

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G IKS GPRYCPS+EDKI RF  ++ HQIF+EPEG  T  +Y NG ST+LPE+IQ + IR
Sbjct: 268 GRIKSTGPRYCPSVEDKIDRFATKDRHQIFVEPEGWTTVEMYVNGFSTSLPEDIQDKAIR 327

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
            I G E V  +R GYAIEYD+  P +L  +LETK I  LF AGQINGTTGYEEAAAQGL+
Sbjct: 328 AIEGFENVKFLRYGYAIEYDFFQPTQLKHSLETKLIENLFFAGQINGTTGYEEAAAQGLM 387

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AG+N+A K+         R ++YIGV+IDDL +KG  EPYRMFTSRAEYR  LR DNAD 
Sbjct: 388 AGVNAALKTQGKAPFILKRNEAYIGVLIDDLITKGTEEPYRMFTSRAEYRTLLRQDNADL 447

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST--SISFKQDGKTR 502
           RLTP+G KLG   + R  R  +  ++   L   L    +  + ++    +       ++ 
Sbjct: 448 RLTPLGYKLGLASQERMDRMLEKQKKTALLIQFLNETSVKQEEVNPILSAKGLALVNQSM 507

Query: 503 TAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
             ++  + P  S+ +   +             +  IE+ QI   Y+ Y  ++   A ++ 
Sbjct: 508 KLFKVAARPQLSLSDFMHLTKLKDFLHEHVIQADAIEQAQIHLKYSGYIDKEKNNADKLN 567

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             E  +IP  F Y  + +LS E  EKL+ +KP ++ QAS+I G++P+ +++LL+Y+ +
Sbjct: 568 RLENVVIPSSFIYEKVKSLSFEATEKLNKVKPTSISQASRISGVSPSDISVLLVYMGR 625


>gi|110635799|ref|YP_676007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesorhizobium sp. BNC1]
 gi|123353088|sp|Q11CN3|MNMG_MESSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|110286783|gb|ABG64842.1| glucose inhibited division protein A [Chelativorans sp. BNC1]
          Length = 622

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/586 (57%), Positives = 430/586 (73%), Gaps = 2/586 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T +  TIG MSCNPAIGG+GKG LVRE+DALDGLMGRVADAAGIQFR+LN +KGPAVR
Sbjct: 32  LVTMRRDTIGVMSCNPAIGGIGKGQLVREVDALDGLMGRVADAAGIQFRLLNRRKGPAVR 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPRTQADR+LYR AMQ  I  QENL VI+ EV     E   I+ + +  +S I C+ VVL
Sbjct: 92  GPRTQADRKLYRQAMQAVISEQENLQVIEAEVHTLGMEHGRITHVGLSGDSQINCAAVVL 151

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IHIG+ KIPAGR+ +  +  L  S     F  GRLKTGTP RLDG+TI W+
Sbjct: 152 TTGTFLRGLIHIGQKKIPAGRVNEPAAKGLSASMEAAGFKLGRLKTGTPPRLDGRTIEWN 211

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
               Q ADE  +PFS +++KI N QI CGITRT  +THRII EN+  SA+YSG I+  GP
Sbjct: 212 MLGFQKADEDPVPFSLLSEKIQNPQITCGITRTTTDTHRIIQENLDKSAMYSGQIEGIGP 271

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIV+FGER+GHQIFLEPEGL+   VYPNG+ST+LPEE+QH F++TIPGL   
Sbjct: 272 RYCPSIEDKIVKFGERDGHQIFLEPEGLDDHTVYPNGLSTSLPEEVQHAFLKTIPGLANA 331

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           ++++PGYAIEYD+++P+EL P+LET+++ GLFLAGQINGTTGYEEAAAQG++AGIN+A  
Sbjct: 332 HVLQPGYAIEYDHVDPRELEPSLETRRVRGLFLAGQINGTTGYEEAAAQGVIAGINAASV 391

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           ++    +  SRTD+YIGVMIDDL ++GV EPYRMFTSRAE+R+SLR DNAD RLTP  ++
Sbjct: 392 ASGSTTVVPSRTDAYIGVMIDDLVTRGVTEPYRMFTSRAEFRLSLRADNADERLTPRAIE 451

Query: 453 LGCIGERRQKR-FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
            G   + R+ R + K  QE +  R L K+  LT    +   I+  QDG  R+AY+ LS+ 
Sbjct: 452 WGVASKVRRDRFY-KAEQELSDARELTKARGLTPNEAARHGIAVNQDGVRRSAYDLLSFA 510

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
           D +I+ L +I P+    +    ERL+ E+ YA Y  RQ+ +A+ ++ EE R IP   D+ 
Sbjct: 511 DINIERLKAIWPELGSIAPKTCERLETEARYAVYLDRQVADAERVRREEGRSIPDGIDFD 570

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           S+P LSNELK KL   +P  L +A +I+GMTPAAL L+L+ I++  
Sbjct: 571 SVPGLSNELKYKLRQRRPRTLAEAQRIDGMTPAALALILVAIRQGE 616


>gi|187735314|ref|YP_001877426.1| glucose inhibited division protein A [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425366|gb|ACD04645.1| glucose inhibited division protein A [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 628

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/638 (42%), Positives = 365/638 (57%), Gaps = 43/638 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G GHAG EAA  A++LG S A++TH   TIG MSCNPAIGGL KGH+VREIDA+
Sbjct: 12  FDVLVVGAGHAGIEAALAASRLGCSVAVLTHNLDTIGQMSCNPAIGGLAKGHIVREIDAM 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG   DA  IQFR+LN  KGP+VR PR Q D+  YR  M+  + +   + + QG+V 
Sbjct: 72  GGAMGLNTDATAIQFRMLNASKGPSVRAPRAQCDKTAYRTRMKMVLETAPGIRLFQGDVV 131

Query: 126 GFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                     +  V      I   +V++ +GTF++G++H+G   I  GRMG   S+SL  
Sbjct: 132 KLLVNGEQQATGAVTSLGCAIHARSVIICSGTFMKGLLHVGLQHITGGRMG-CASSSLSA 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-------- 236
                 F   RLKTGT  R++G++I +   E Q  D     FS+ +  I  R        
Sbjct: 191 DLAMLGFQVERLKTGTSPRVNGRSIDFSVCEIQPGDAPEALFSYRSRDILKRDSEPFCTL 250

Query: 237 -----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                      Q+ C IT TN  TH II +N+K S +YSG I+  GPRYCPSIEDKIVRF
Sbjct: 251 NTWGDENFRMKQMPCWITYTNQTTHDIIRKNLKFSPLYSGIIEGVGPRYCPSIEDKIVRF 310

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E+N HQ+FLEPEG +T+  Y NG+ST+LP   Q  FI TIPGLE   +IRPGYA+EYD+
Sbjct: 311 AEKNSHQVFLEPEGRSTEEFYLNGVSTSLPYSAQCDFIHTIPGLENAQLIRPGYAVEYDF 370

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P +L PTLETK +  L+ AGQINGT+GYEEAAAQGL+AG N+A K+     +   R  
Sbjct: 371 CPPTQLHPTLETKLVENLYFAGQINGTSGYEEAAAQGLMAGANAALKTLGKPSLVLRRDQ 430

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +YIGVMIDDL +KG  EPYRMFTSRAE+R+ LR DNAD RL P+  + G I     ++  
Sbjct: 431 AYIGVMIDDLVTKGTDEPYRMFTSRAEFRLLLRQDNADLRLAPLAFEAGLITCEMARKAE 490

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
                            + +  L    +S            +L  P        ++ P+ 
Sbjct: 491 DRKNAVEEGI-------IKAAALKHEGVSLST---------WLKRPGNDW----TLLPEE 530

Query: 526 RK--FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
            K  F    ++ +  +  Y  +  RQ  +A++I   E + IP D DY  + AL  E   K
Sbjct: 531 LKKMFHVEHLDAIATDIQYEGHIERQKKQAEKIIRMENKTIPSDIDYKHVHALKKEAVIK 590

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L  ++P  + QAS+I G+TPA + LLL++++K + +  
Sbjct: 591 LGNIRPATIGQASRIPGITPADIALLLVHLQKRSRQQT 628


>gi|162446948|ref|YP_001620080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acholeplasma laidlawii PG-8A]
 gi|189039327|sp|A9NEC4|MNMG_ACHLI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161985055|gb|ABX80704.1| glucose inhibited division protein A [Acholeplasma laidlawii PG-8A]
          Length = 617

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/613 (40%), Positives = 356/613 (58%), Gaps = 6/613 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I++G GHAG EAA   AK+  +T LIT   + + ++ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDGIIVGAGHAGVEAALAMAKMKLNTLLITGDLTKVATLPCNPSIGGPAKGIVVREIDAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M + AD + IQ ++LN  KGPAVR  R Q D+  Y   M   + +  NL ++QG V 
Sbjct: 63  GGQMAKSADLSQIQMKMLNPSKGPAVRALRAQIDKLKYPKVMLDVLQNTPNLTLLQGFVD 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E N +  + ++D S +   TV++TTGT+L   I IG  K  +G  G+  +  + N 
Sbjct: 123 TLIVEDNTVKGVNLEDGSQVFAQTVIITTGTYLGSQILIGHEKTSSGPNGERTTRGISNQ 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE-CGITR 244
                F+  RLKTGTP R+   +I + KT  Q  D     FS  +        E   +  
Sbjct: 183 LKNLGFEMLRLKTGTPPRIARDSIDYSKTVPQPGDGVFQTFSHDSPITDLGHQEFSYLIH 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ +T  II  N+  SA+Y G ++  GPRYCPSIEDK VRF +++ HQIF+EPE ++ + 
Sbjct: 243 TSPDTKDIIFNNLDASAMYGGVVEGVGPRYCPSIEDKFVRFKDKDRHQIFIEPESMDLNE 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ IQ Q +R++PG+E   I+R  YAIEYD INP++L+ +LETK I  LF
Sbjct: 303 MYIQGLSTSMPKHIQEQMVRSLPGMENARIVRYAYAIEYDAINPRQLYQSLETKVIHNLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAA QGL+AGIN+  K      +   R ++YIGV+IDDL +KG  EPY
Sbjct: 363 CAGQINGTSGYEEAAGQGLMAGINAGLKVQGKKPLVLKRDEAYIGVLIDDLITKGTSEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL   G ++G + +   +RF         +    KS  + 
Sbjct: 423 RLLTSRAEHRLLLRNDNADIRLRDYGYQIGLVDDATYERFEHKKIALKEMIERAKSTKIN 482

Query: 485 SKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
               +   ++           T ++ L  P+  I+ L    P    ++  + E+L+I   
Sbjct: 483 PTEENLNYLASVNSSPIYEGVTVFKLLERPELKIETLKHFLP--SDYNHEIYEQLEIYIK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   EA ++   E R IP D +Y S+  +S E KEKLS +KP  L QA++I G+
Sbjct: 541 YDGYIEKARREADKLLRYESRFIPNDINYHSIHNISAEAKEKLSKIKPETLGQATRILGV 600

Query: 602 TPAALNLLLIYIK 614
            P  +++LL+Y++
Sbjct: 601 GPTDVSMLLVYLE 613


>gi|254583203|ref|XP_002499333.1| ZYRO0E09328p [Zygosaccharomyces rouxii]
 gi|238942907|emb|CAR31078.1| ZYRO0E09328p [Zygosaccharomyces rouxii]
          Length = 694

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/630 (44%), Positives = 404/630 (64%), Gaps = 18/630 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G GHAGCEAA  +A+ GA T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 51  VVVVGAGHAGCEAATGSARTGAPTVLITPFLNKIGTCSCNPSMGGVGKGTLLREVDALDG 110

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  +V D AGIQF++LN  +G AV GPR Q DRE+Y   MQ ++ +  NL + +G+V   
Sbjct: 111 VAAKVTDLAGIQFKMLNRSRGAAVWGPRAQIDREIYLREMQNKLNNYPNLRLWEGKVKDL 170

Query: 128 NTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
             +             +  ++++D S+++ S VV+TTGTFL   IHIG    PAGRMG+ 
Sbjct: 171 IVDIRKNQNSNYTYGAVKGVILEDGSLLKSSKVVITTGTFLSAEIHIGLETFPAGRMGEG 230

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NR 236
            +  +  +     F  GRLKTGTPARLDG+TI +   EKQ+ D+   P S + + ++   
Sbjct: 231 ATYGISETLEDAGFQLGRLKTGTPARLDGRTIDYTHLEKQYGDDPPHPMSLINEDVSIKD 290

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C  T TNL  H  I  N+  +      IK  GPRYCPSIE KI+RF +++ H+I+LE
Sbjct: 291 QVLCYGTYTNLGLHDYIRSNLHRAMHIRETIK--GPRYCPSIEAKILRFSDKDSHRIWLE 348

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGLNTDV+YPNGIS ++PE++Q Q +R IPGLE V I++P Y +EYDY++P++L  TLE
Sbjct: 349 PEGLNTDVIYPNGISNSMPEDVQIQMMRMIPGLENVEILQPAYGVEYDYVDPRQLRQTLE 408

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK ISGL+LAGQINGTTGYEEA AQG+VAGIN+       + +  SR+D+YIGV+IDDL 
Sbjct: 409 TKLISGLYLAGQINGTTGYEEACAQGVVAGINAGLLHMNREPLKLSRSDAYIGVLIDDLI 468

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KGV EPYRMFTSR+E+R+S+R DNAD RLT +G KLG +G+ R   F  Y  +Y  + S
Sbjct: 469 TKGVEEPYRMFTSRSEFRVSVRADNADFRLTELGRKLGVVGDDRWSIFQSYKNQYLNIES 528

Query: 477 LLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA----RKFSSL 531
            LK   L+++  ++  +I      K R+A+E   +   +++ +    P+      +    
Sbjct: 529 KLKDFNLSARKWTNLLNIQVADSAKNRSAWELFRFNGVTLEKMMEAVPELGIDINELPRH 588

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V+ ++ ++  Y+ Y  RQ    K  + +E  ++P++FDYS LP+LS E K  L+ ++P  
Sbjct: 589 VLVKVNVQGKYSPYISRQNQYVKAFQADENMVLPQNFDYSQLPSLSFECKTLLNTIQPET 648

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           + QA +I+G+T A+L  L   +K     L 
Sbjct: 649 IGQARRIQGITAASLFELYRLVKSKQRVLQ 678


>gi|224370296|ref|YP_002604460.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfobacterium autotrophicum HRM2]
 gi|223693013|gb|ACN16296.1| GidA [Desulfobacterium autotrophicum HRM2]
          Length = 627

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/615 (44%), Positives = 379/615 (61%), Gaps = 3/615 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             ++YDVIV+G GHAGCEAA  AA +G  T L       I +M C+P+IGG+ KG LV+E
Sbjct: 4   YTKNYDVIVVGAGHAGCEAAIAAANMGCRTLLAAIDLDKIAAMPCSPSIGGMAKGQLVKE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M +V+DA+ IQ+R LN +KGPAV   RTQ D+ LY+  M++ + +  NLD  Q
Sbjct: 64  IDALGGKMAKVSDASAIQYRTLNTRKGPAVHSTRTQNDKRLYQATMKKIVETTLNLDFKQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E + +  I  +       S VVL TGTFL+G++HIG  KI AGR G+  S  
Sbjct: 124 MMVDQLVIENHRVIGIREETGFGYHGSAVVLATGTFLKGMVHIGTTKIHAGRAGEFSSIG 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +  F   R+KTGTP RL   TI + +  +Q +D    PFSF T  +    +   
Sbjct: 184 LAASLEREGFLLERMKTGTPPRLALSTIDFSEFSRQDSDPDPTPFSFSTTTVKGGMLPSF 243

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH ++ +N+KHSA+Y G I     RYCPS EDKIV+F +R+ HQI LE EG +
Sbjct: 244 IGHTNTHTHDLVRQNLKHSALYGGSIIGKSARYCPSFEDKIVKFPDRDQHQIILEHEGTD 303

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           +  +Y +G+  +LP EIQ + +R++ GLE+  I+RP YAIEYDYINP+EL PTLETK+I+
Sbjct: 304 SQEIYASGLGNSLPVEIQLEVVRSVKGLEQAEIMRPAYAIEYDYINPQELNPTLETKRIN 363

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAAAQGL AGIN+A    + +     R+++Y+GVMIDDL ++G  
Sbjct: 364 GLFFAGQINGTSGYEEAAAQGLWAGINAACMVKEQEPFLLDRSEAYMGVMIDDLVTRGTK 423

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DNAD RL   G +LG +  +      +  +      + ++S 
Sbjct: 424 EPYRMFTSRAEYRLLLREDNADLRLAEKGHELGLVDGQALAAAREISRGTKKEMARIQSH 483

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           V+     ++  ++        T     + L         +    P      S + ++++I
Sbjct: 484 VVKPTPETNAWLNRAGSTPITTGLKLDQLLKRAGIDYSAVDVFAPSPSTIPSRIKKQVEI 543

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ Y  Y  RQ+ E K+ K  E+  IPKD ++ ++  LSNEL+EKL+ +KP +L QAS+I
Sbjct: 544 ETKYEGYIARQLNEIKKFKDMERIKIPKDIEFKAIHGLSNELREKLTSVKPLSLGQASRI 603

Query: 599 EGMTPAALNLLLIYI 613
           +GMTPAAL+++LI I
Sbjct: 604 DGMTPAALSVILIAI 618


>gi|78185898|ref|YP_373941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Chlorobium luteolum DSM 273]
 gi|78165800|gb|ABB22898.1| Glucose-inhibited division protein A subfamily [Chlorobium luteolum
           DSM 273]
          Length = 627

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/622 (41%), Positives = 379/622 (60%), Gaps = 14/622 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV G GHAG EAA   ++ G S  L+T   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 8   YDVIVAGAGHAGTEAALAVSRSGLSCLLVTTDLNAVARMSCNPAIGGVAKGQITREIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  D+ GIQFR+LN+ KGPA+  PR QADR  Y   M+R +  + NLD++Q  V 
Sbjct: 68  GGEMAKAIDSTGIQFRMLNLSKGPAMHSPRAQADRVAYTAYMKRALEEEVNLDLLQDTVT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G    + I+  + +    ++     +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 128 GIEQREGILRGVRLLSGRLVTGRAAILTCGTFLNGLIHIGMDHYPGGRTIAEPPVTGLTE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGIT 243
           + +   F+ GRLKTGTP R+D +++ + + E+Q  DE   PFSF T  +  R Q+ C +T
Sbjct: 188 NLILAGFEAGRLKTGTPPRIDRRSVDYSRVEEQKGDENPPPFSFSTPTLKGRAQLSCYVT 247

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            ++  TH I+      S +++G ++  GPRYCPSIEDKI RF +R GH IFLEPEG  T+
Sbjct: 248 HSSERTHEILKTGFDRSPLFTGKVQGIGPRYCPSIEDKIFRFPDRPGHHIFLEPEGFETN 307

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +R++ GLE+V +IR GYAIEYDY  P ++  TLETK+I  L
Sbjct: 308 EMYVNGFSTSLPEDIQIDGLRSMKGLEEVKLIRAGYAIEYDYFPPYQIHSTLETKRIRNL 367

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN+A    K   +   R+D+YIGV++DDL +K + EP
Sbjct: 368 YFAGQINGTSGYEEAAAQGLLAGINAAADILKRPALRLKRSDAYIGVLVDDLVTKEMKEP 427

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G + G + +   +R    ++    +++L +   +
Sbjct: 428 YRMFTSSAEHRLMLRHDNADIRLMHFGHQSGLVSDAAMERCRTKMRAIGEIKALTEKTAI 487

Query: 484 TSKNL----SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVI 533
            ++ L    S         G+  +A   +  P  S++ L +  P  R+            
Sbjct: 488 PAEVLDSLISKQGQPHAASGQKISAA--IKRPGMSLEILMNSLPPFREALLSISTDKEAH 545

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           ++++I+  Y  Y  R+++ A +I   +   IP +++YS +  LS+E  EKL   +P  L 
Sbjct: 546 QQVEIDLKYEGYLKRELLTADKIARLDALQIPSEYNYSCIKGLSSEGVEKLISHRPETLG 605

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ +++L+++I +
Sbjct: 606 QASRISGVSPSDISVLMVHIGR 627


>gi|300770728|ref|ZP_07080607.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763204|gb|EFK60021.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 619

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/618 (43%), Positives = 387/618 (62%), Gaps = 6/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + Y+VIV+G GHAGCEAAA AA LG+S  LIT     I  MSCNPAIGG+ KG +VRE
Sbjct: 1   MFKKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGVIAQMSCNPAIGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G  G +AD + +QFR+LN+ KGPA+  PR+Q DR  +    + ++ +  NLD+ Q
Sbjct: 61  IDAMGGYTGIIADKSTLQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRMQLEAIPNLDMWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +  + ++      I    VVLT GTFL GVIHIG+ K   GR G+  +  
Sbjct: 121 DTVKEVIVEGDKAAGVITSLGIRIEADAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L    +   F++GR+KTGTP R+DG+++ ++  E+Q+ DE    FS+    I   Q  C 
Sbjct: 181 LTEQLVSLGFESGRMKTGTPPRIDGRSLNYELMEEQWGDENKGRFSYTDVPIPTAQRCCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN + H ++    + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG N
Sbjct: 241 ITYTNDKVHEMLKTGFERSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGFN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q + ++ IPG E   + RPGYAIEYD+  P +L  TLET +I 
Sbjct: 301 TVEIYVNGFSTSLPEDVQQKALQLIPGFENARMYRPGYAIEYDFFPPMQLDLTLETLRIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEA AQG +AGIN+ ++ N L  +   R++SYIGV+IDDL +KG  
Sbjct: 361 HLFFAGQINGTTGYEEAGAQGFIAGINAHQRINDLHELTLKRSESYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLTP+  KLG +GE R  +  + I+  + +   L+  
Sbjct: 421 EPYRMFTSRAEHRLLLRQDNADIRLTPMAYKLGLVGEERLNKVNEKIKNSDAIVEYLRQN 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSLVIER 535
            +T+ +++     ++     +    +  LS P  +I ++     D      +F    IE+
Sbjct: 481 SVTADHINPVLEDLNSSPVSQKTRMFNILSRPQINIYDIKKADSDFESYLNQFDKETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y +Y  ++M     +K  E + I  +FDY+SL +LS E ++KL  +KP  L QA
Sbjct: 541 AEIKVKYDSYFEKEMEIVNRMKKMEDKEINPNFDYNSLTSLSIEARQKLLKVKPRTLGQA 600

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++PA +++L++++
Sbjct: 601 SRISGVSPADISVLMVHM 618


>gi|310779688|ref|YP_003968021.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
 gi|309749011|gb|ADO83673.1| glucose inhibited division protein A [Ilyobacter polytropus DSM
           2926]
          Length = 622

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/618 (38%), Positives = 361/618 (58%), Gaps = 4/618 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIV+GGGHAGCEAA  +A+LG  TA+ T     I  MSCNP+IGG GK HLV 
Sbjct: 1   MNRMEFDVIVVGGGHAGCEAALASARLGKKTAMFTMYLDNIAMMSCNPSIGGPGKSHLVA 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G +GR  D   +Q + LN  KGPA R  R QAD+  YR+ M+  I +   L+VI
Sbjct: 61  EIDVLGGEIGRHTDRYNLQLKHLNTSKGPAARITRGQADKYWYRVKMKEIIENTPGLEVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  +    TE   ++ ++       +  +VVL TGTFL+  + IG +  PAGR G+  + 
Sbjct: 121 QETIDEIITEDGHVTGVISSLGIEYKAKSVVLATGTFLKAKVVIGDVVYPAGRQGEGSAE 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S +K   D  R +T TP R+D +T+ + K ++   +E    FS  T K  NR +  
Sbjct: 181 ELSESLLKNGIDLERYQTATPPRIDKRTVDFSKLKEMHGEENPNFFSLFTKKEKNRTVPT 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  +T  +  E +  S I +G IK++GPR+CPS++ K++ F ++  HQIFLE E +
Sbjct: 241 WLTHTTEKTIDVARELLHFSPIVTGVIKTHGPRHCPSLDRKVLNFPDKKDHQIFLEMESM 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ +Y NG++TA+P   Q + +RTI GLE   I+R GYA+EYDY    +L+P+LE KK+
Sbjct: 301 ESNELYVNGLTTAMPPFAQEKMMRTIAGLENAEIMRYGYAVEYDYAPAYQLYPSLENKKV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAA QG +AG+N+ARK +K D +   R+++YIGV+IDD+  K  
Sbjct: 361 RNLYFAGQINGTSGYEEAATQGFMAGVNAARKVDKKDPVIIDRSEAYIGVLIDDIIHKKT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+  SRAEYR++LR DNA  RL     ++G I E + +     I+  +     LK 
Sbjct: 421 PEPYRVLPSRAEYRLTLRFDNAFMRLLDKSREIGIISEDKIEYLENCIKNIDLEVQRLKQ 480

Query: 481 LVLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
             +    +  L       ++  K  T  + L + + S ++L  I  D ++F   V  +++
Sbjct: 481 ESVPLSKANELLEKKGEKQRVVKGVTVSDILKFKNVSYEDLAYIT-DIQEFPDFVKNQIE 539

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
               Y  +  R+  + ++ K  E   IP+DFD+S +  +SN  +  +  ++P ++ +A++
Sbjct: 540 TIIKYEVFIDRERSQIEKFKKLESLKIPEDFDFSEIKGVSNIARHGMEEVQPISIGEATR 599

Query: 598 IEGMTPAALNLLLIYIKK 615
           I G+T   + LL+ +I++
Sbjct: 600 ISGVTGHDIALLIAHIER 617


>gi|194246538|ref|YP_002004177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Phytoplasma mali]
 gi|193806895|emb|CAP18324.1| Glucose-inhibited division protein A [Candidatus Phytoplasma mali]
          Length = 624

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/615 (40%), Positives = 372/615 (60%), Gaps = 6/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD IV+GGGHAG EAA + AK    T LIT     IG + CNPAIGG  KG +VREIDA
Sbjct: 2   NYDSIVVGGGHAGIEAALILAKKNKKTLLITGSLEQIGCLPCNPAIGGPAKGVVVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+ AD + IQ ++LN  KGPAVR  R Q D+  Y   +   +    NL +++G V
Sbjct: 62  LGGIMGKAADLSQIQMKMLNSSKGPAVRALRAQIDKLKYPKVILEILKKTNNLTLLEGLV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                  N I  + +++ S+I   TV++TTGT+L   I IG+ KI +G   +  +  +  
Sbjct: 122 EELIINNNQIEGVKLKNKSIIFGKTVIITTGTYLSSKIFIGEDKILSGPNNNPTNYGISK 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
              + +F+  RLKTGTP R+   TI + KT+ Q+ ++    FSF +  K   +Q  C +T
Sbjct: 182 QLKQNNFEIIRLKTGTPPRIKKNTIDYSKTKIQYGNDVFQTFSFDSPIKTIGKQEPCFLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T+ II + +K S++Y G I+  GPRYCPSIEDK+VRF  +N HQ+F+EPE L  +
Sbjct: 242 YTNQKTNDIINKYLKQSSMYGGYIEGKGPRYCPSIEDKVVRFCNKNQHQVFIEPESLKLN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST++P+ +QH+ ++TIPGLE   I++ GYAIEYD +NP +L+ +LETKKI  L
Sbjct: 302 EMYLQGLSTSMPKHVQHKILKTIPGLENAEIVKYGYAIEYDALNPNQLYHSLETKKIKNL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EP
Sbjct: 362 FFAGQINGTSGYEEAACQGLIAGINASLKMENKPPFILKRNEAYIGVLIDDLINKGTHEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RL     K+  I E   ++F     +   +   +++L +
Sbjct: 422 YRLLTSRAEFRLLLRHDNADLRLKEHAYKMALISEENYQKFKTKKNKIKDVLKQIENLQI 481

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
                +   +S  Q     +  +  + L  P+ +   L     +       + E+++I+ 
Sbjct: 482 EPNKKNLNYLSNFQSSLISEKTSLSQLLKRPEINFHFLKYFFQE--NIDHYIFEQVEIQI 539

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +   E  ++   E ++I  + +YS +  LS E +EKL ++KP+NL QAS+I G
Sbjct: 540 KYQGYIKKAQKEVDKLLKLEGKIISTNIEYSKINNLSKEAQEKLDLIKPYNLGQASRISG 599

Query: 601 MTPAALNLLLIYIKK 615
           + P  +++L+IY++K
Sbjct: 600 INPTDISILMIYLEK 614


>gi|300871371|ref|YP_003786244.1| tRNA-uridine 5-carboxymethylaminomethyl modification protein GidA
           [Brachyspira pilosicoli 95/1000]
 gi|300689072|gb|ADK31743.1| tRNA-uridine 5-carboxymethylaminomethyl modification enzyme, GidA
           [Brachyspira pilosicoli 95/1000]
          Length = 614

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/616 (44%), Positives = 386/616 (62%), Gaps = 3/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG  T +I+    TIG MSCNP+IGG+ KG +V+E
Sbjct: 1   MNNKYDVIVVGAGHAGIEAALSSARLGMKTLIISINLDTIGQMSCNPSIGGVAKGTIVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG + D   +QFR+LN  KG AV  PR QAD+  Y+    + + +++NL + Q
Sbjct: 61  IDALGGEMGILIDKTMMQFRMLNRSKGKAVWAPRAQADKYAYKEEATKTLYAEDNLTLHQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E N++  +  +      C  V+LTTGTFL G+IHIGK +  AGR+G+ P+  
Sbjct: 121 DIVTEVVVENNVVKGLKTERGIEYECQAVILTTGTFLNGLIHIGKYQKQAGRIGELPAIG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L ++  K   + GRLKTGTPAR+D  +I +D  E Q  D+ + PFSF+ DKI   Q  C 
Sbjct: 181 LSDNLRKLGLEVGRLKTGTPARVDYYSINFDILEMQKGDDEITPFSFLDDKIDIVQEPCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT T+   H+II +NI  S +YSG I   GPRYCPSIEDK+VRF ++  HQ+ LE E   
Sbjct: 241 ITYTDENIHKIIQDNIHLSPMYSGVITGIGPRYCPSIEDKVVRFADKPRHQLHLERESYR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ VY NG S++LPE++Q + IR++ GLE+V I++P YA+EYDY+NP EL PTLETKKI 
Sbjct: 301 TNEVYINGFSSSLPEDVQIKMIRSLKGLEEVKILKPAYAVEYDYVNPIELKPTLETKKIE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLFLAGQINGT+GYEEAA QG++AGIN++ K  K +     R+D YIGV+IDDLT+KG  
Sbjct: 361 GLFLAGQINGTSGYEEAACQGIMAGINASLKIKKEEPFILKRSDGYIGVLIDDLTTKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EP+RMFTS+AE+R+ LR DNAD RLT +   +G   + R ++     Q+   L   L   
Sbjct: 421 EPHRMFTSQAEHRMLLRQDNADERLTELSYNIGLASKERLEKVRDKKQKTQILVEYLNKR 480

Query: 482 VLTSKNLSSTSISFKQDG-KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            LT K       + +    +T +    +  P+ SI  +  +      ++  V+E  +I  
Sbjct: 481 TLTQKETEELGFTKEAKEYRTMSLSSIIKRPECSIDMVKHLI--DGDYNKNVLENAEIAI 538

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  R + E ++I+  EK  IP+DFDYS+L ++  +   KL   KP+N+ QA ++  
Sbjct: 539 KYEGYIARYLNEIRDIEKYEKMRIPEDFDYSTLKSVKIDAINKLKQYKPYNIAQALRVPE 598

Query: 601 MTPAALNLLLIYIKKN 616
           +  + + +L++ + K 
Sbjct: 599 IDMSVVQVLILTLTKK 614


>gi|328352837|emb|CCA39235.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Pichia pastoris CBS 7435]
          Length = 656

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/626 (45%), Positives = 392/626 (62%), Gaps = 21/626 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAG EAA  +A+ G  T+LIT   S IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 17  VVVIGAGHAGIEAATGSARTGVLTSLITPDLSKIGTCSCNPSMGGVGKGTLLREVDALDG 76

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  ++ D AGIQF++LN  +GPAV GPR Q DR++Y   MQ+E+    NL++++G+V   
Sbjct: 77  VAPKIVDKAGIQFKILNRSRGPAVWGPRAQIDRKIYLEEMQKELEGYPNLNIVEGKVEDL 136

Query: 128 NTEKN---------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             E                  I  +V+    +IR   V++TTGTFL G IHIG    PAG
Sbjct: 137 LIEPPAQTKTSTDVEGRSFGRIRGLVLDSGDLIRADKVIITTGTFLGGEIHIGLNCYPAG 196

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+  +  L  +  +  F  GRLKTGTP RL  KTI +   E Q  D+   P S+M D 
Sbjct: 197 RIGEDATFGLSKTLNEAGFRLGRLKTGTPPRLSSKTIDYSNLEVQHGDDPPQPMSYMNDT 256

Query: 233 I-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +  N Q+ C  T T  E H +I  N+  S      +K  GPRYCPSIE K++RF ++  H
Sbjct: 257 VRINEQLRCHATETTPEMHDLIRSNLDKSIHIRETVK--GPRYCPSIESKVIRFADKTKH 314

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEG++ DVVYPNGIS  +PE+IQ Q +R I GLEKVN+++PGY +EYDY++P+EL
Sbjct: 315 TVWLEPEGIDNDVVYPNGISCTMPEDIQLQMVRMIKGLEKVNMLQPGYGVEYDYVDPREL 374

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK I GL+LAGQINGTTGYEEAA+QG++AG+N+A        +  SR D YIGV+
Sbjct: 375 KPTLETKLIEGLYLAGQINGTTGYEEAASQGVIAGVNAALSQQNKPPLKLSRCDGYIGVL 434

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+E+R+S+R DNAD RLTP G  +GC+G+ R   F K  +  
Sbjct: 435 IDDLITKGVQEPYRMFTSRSEFRVSVRSDNADLRLTPKGRDVGCVGDERWDHFLKEKELL 494

Query: 472 NFLRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKF 528
           N  R  L     +S     S  I+   D K +TA++ L Y    ++ LF +   P     
Sbjct: 495 NTTRDYLTKFKQSSAKWRQSLGINISDDSKPKTAFDILKYQKVGMKELFPLLNFPHKADL 554

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S  ++ +L +E  YA +  +++   K  + +E  L+P  FDY  +PALS+E+   L+ ++
Sbjct: 555 SDRILHKLTVEGLYAGHLKKEIGYIKAFQSDENLLLPTGFDYRDVPALSSEVVNLLNTIQ 614

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QA +I+G+TPAA   L   I+
Sbjct: 615 PETIGQARRIQGVTPAAFFELYRLIR 640


>gi|254572073|ref|XP_002493146.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia pastoris GS115]
 gi|238032944|emb|CAY70967.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia pastoris GS115]
          Length = 679

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/626 (45%), Positives = 392/626 (62%), Gaps = 21/626 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAG EAA  +A+ G  T+LIT   S IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 40  VVVIGAGHAGIEAATGSARTGVLTSLITPDLSKIGTCSCNPSMGGVGKGTLLREVDALDG 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  ++ D AGIQF++LN  +GPAV GPR Q DR++Y   MQ+E+    NL++++G+V   
Sbjct: 100 VAPKIVDKAGIQFKILNRSRGPAVWGPRAQIDRKIYLEEMQKELEGYPNLNIVEGKVEDL 159

Query: 128 NTEKN---------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             E                  I  +V+    +IR   V++TTGTFL G IHIG    PAG
Sbjct: 160 LIEPPAQTKTSTDVEGRSFGRIRGLVLDSGDLIRADKVIITTGTFLGGEIHIGLNCYPAG 219

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+  +  L  +  +  F  GRLKTGTP RL  KTI +   E Q  D+   P S+M D 
Sbjct: 220 RIGEDATFGLSKTLNEAGFRLGRLKTGTPPRLSSKTIDYSNLEVQHGDDPPQPMSYMNDT 279

Query: 233 I-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +  N Q+ C  T T  E H +I  N+  S      +K  GPRYCPSIE K++RF ++  H
Sbjct: 280 VRINEQLRCHATETTPEMHDLIRSNLDKSIHIRETVK--GPRYCPSIESKVIRFADKTKH 337

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEG++ DVVYPNGIS  +PE+IQ Q +R I GLEKVN+++PGY +EYDY++P+EL
Sbjct: 338 TVWLEPEGIDNDVVYPNGISCTMPEDIQLQMVRMIKGLEKVNMLQPGYGVEYDYVDPREL 397

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK I GL+LAGQINGTTGYEEAA+QG++AG+N+A        +  SR D YIGV+
Sbjct: 398 KPTLETKLIEGLYLAGQINGTTGYEEAASQGVIAGVNAALSQQNKPPLKLSRCDGYIGVL 457

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+E+R+S+R DNAD RLTP G  +GC+G+ R   F K  +  
Sbjct: 458 IDDLITKGVQEPYRMFTSRSEFRVSVRSDNADLRLTPKGRDVGCVGDERWDHFLKEKELL 517

Query: 472 NFLRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI--CPDARKF 528
           N  R  L     +S     S  I+   D K +TA++ L Y    ++ LF +   P     
Sbjct: 518 NTTRDYLTKFKQSSAKWRQSLGINISDDSKPKTAFDILKYQKVGMKELFPLLNFPHKADL 577

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S  ++ +L +E  YA +  +++   K  + +E  L+P  FDY  +PALS+E+   L+ ++
Sbjct: 578 SDRILHKLTVEGLYAGHLKKEIGYIKAFQSDENLLLPTGFDYRDVPALSSEVVNLLNTIQ 637

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P  + QA +I+G+TPAA   L   I+
Sbjct: 638 PETIGQARRIQGVTPAAFFELYRLIR 663


>gi|87123456|ref|ZP_01079307.1| glucose inhibited division protein A [Synechococcus sp. RS9917]
 gi|86169176|gb|EAQ70432.1| glucose inhibited division protein A [Synechococcus sp. RS9917]
          Length = 644

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/630 (41%), Positives = 371/630 (58%), Gaps = 20/630 (3%)

Query: 12  GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
           GGGHAGCEAA  AA+LG +TAL +     I    CNPA+GG  K  LV E+DAL G++GR
Sbjct: 2   GGGHAGCEAAITAARLGLNTALFSLNLDRIAWQPCNPAVGGPAKSQLVHEVDALGGVIGR 61

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
           +ADA  IQ R+LN  +GPAV   R Q D+  Y   M R +    NL + +  V G   E 
Sbjct: 62  LADATAIQKRILNASRGPAVWALRAQTDKRQYSRQMLRLLQHTPNLALREAMVTGLEIEG 121

Query: 132 N----------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           +                 I+ +     S+     VVLT GTFL G I +G   + AGR G
Sbjct: 122 DPTGGGDDWDPRQGAAARITGVRTYFGSVYGARAVVLTAGTFLGGRIWVGHQSMAAGRAG 181

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KIT 234
           +  +  L  +  +  F T RLKTGTPAR+D ++I  D+ E+Q +D     FSF     ++
Sbjct: 182 EQAAEGLTEALQQLGFHTDRLKTGTPARVDRRSIALDQLEEQPSDAADRFFSFDPAAWVS 241

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C ITRT   TH++I +N+  +AIY G I S GPRYCPSIEDKIVRF +++ HQIF
Sbjct: 242 GEQMSCHITRTTAATHQLIQDNLHLTAIYGGVIDSKGPRYCPSIEDKIVRFADKDSHQIF 301

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG +T  +Y  G ST LPE IQ Q +R++PGLE+  ++R  Y+++YDY+   +L P+
Sbjct: 302 LEPEGRDTPEIYVQGFSTGLPEPIQLQLLRSLPGLEQCVMLRAAYSVDYDYLPATQLLPS 361

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK++ GLF AGQ+NGTTGYEEAAAQGLVAG+N+AR+    + + F R  SYIG MIDD
Sbjct: 362 LETKRVEGLFSAGQLNGTTGYEEAAAQGLVAGLNAARRIRGQEPVHFPREGSYIGTMIDD 421

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L S+ + EPYR+ TSR+EYR+ LR DNAD RLTP+G +LG I +RR   F + +      
Sbjct: 422 LVSQDLREPYRVLTSRSEYRLVLRGDNADRRLTPLGRELGLIDDRRWHLFQEKLAALEGE 481

Query: 475 RSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
              L+   L   +  ++++  +       + T  + L  P     +L             
Sbjct: 482 TQRLERQRLKVSDPVASAVEAETGAPIKGSITLADLLRRPGVHSADLVRHGLADADLPLP 541

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V E  +I+  Y+ Y  RQ  +  ++K + +R +P D DY+++  LS E +EKL+ ++P +
Sbjct: 542 VREGAEIDIKYSGYLQRQQQQIDQVKRQGQRRLPADLDYTNIGTLSREAREKLAAVRPVS 601

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L QAS+I G++ A L  LL++++    +  
Sbjct: 602 LGQASQIPGVSQADLTALLVWLELQQRRRQ 631


>gi|227539255|ref|ZP_03969304.1| glucose-inhibited division protein A [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240937|gb|EEI90952.1| glucose-inhibited division protein A [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 619

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/618 (43%), Positives = 388/618 (62%), Gaps = 6/618 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + Y+VIV+G GHAGCEAAA AA LG+S  LIT     I  MSCNPAIGG+ KG +VRE
Sbjct: 1   MFKKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGVIAQMSCNPAIGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G  G +AD + +QFR+LN+ KGPA+  PR+Q DR  +    + ++ +  NLD+ Q
Sbjct: 61  IDAMGGYTGIIADKSTLQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRMQLEAIPNLDMWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +  + ++      I    VVLT GTFL GVIHIG+ K   GR G+  +  
Sbjct: 121 DTVKEVIVEGDKAAGVITSLGIRIEADAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L    +   F++GR+KTGTP R+DG+++ ++  E+Q+ DE    FS+    I   Q  C 
Sbjct: 181 LTEQLVSLGFESGRMKTGTPPRIDGRSLNYELMEEQWGDENKGRFSYTDVPIPTAQRCCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN + H ++    + S +++G IK  GPRYCPSIEDKI RF ER  HQIF+EPEG N
Sbjct: 241 ITYTNDKVHEMLKTGFERSPMFTGRIKGLGPRYCPSIEDKINRFAERERHQIFVEPEGFN 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q + ++ IPG E   + RPGYAIEYD+  P +L  TLET ++ 
Sbjct: 301 TVEIYVNGFSTSLPEDVQQKALQLIPGFENARMYRPGYAIEYDFFPPMQLDLTLETLRVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEA AQG +AGIN+ ++ N L  +   R++SYIGV+IDDL +KG  
Sbjct: 361 HLFFAGQINGTTGYEEAGAQGFIAGINAHQRINDLHELTLKRSESYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RLTP+  KLG +GE R  +  + I+  + +   L+  
Sbjct: 421 EPYRMFTSRAEHRLLLRQDNADIRLTPMAYKLGLVGEERLNKVNEKIKNSDAIVEYLRQN 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSLVIER 535
            +T+ +++     ++     +    +  LS P  +I ++     D      +F +  IE+
Sbjct: 481 SVTADHINPVLEELNSSPVSQKTRMFNILSRPQINIYDIKKADSDFESYLNQFDTETIEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y +Y  ++M     +K  E + I  +FDY+SL +LS E ++KL  +KP  L QA
Sbjct: 541 AEIKVKYDSYFEKEMEIVNRMKKMEDKEINPNFDYNSLTSLSIEARQKLLKVKPRTLGQA 600

Query: 596 SKIEGMTPAALNLLLIYI 613
           S+I G++PA +++L++++
Sbjct: 601 SRISGVSPADISVLMVHM 618


>gi|254560703|ref|YP_003067798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Methylobacterium extorquens DM4]
 gi|254267981|emb|CAX23849.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           (Glucose-inhibited division protein A) [Methylobacterium
           extorquens DM4]
          Length = 624

 Score =  690 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/599 (56%), Positives = 425/599 (70%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQ  +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYARAMQAAVAETPELTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    ++ + + D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 DDLTVHSGRVAGVTLTDGRALTAAAVVITTGTFLRGLIHIGERQIPAGRVGEGPAVGLAR 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTP RLDG+TI W   E Q AD   +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPPRLDGRTIDWAALEMQHADAEPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T    H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQAVHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I  IPGLE+  I+RPGYAIEYDY++P+EL  TL+TK++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIAAIPGLERTRILRPGYAIEYDYVDPRELDATLQTKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAA QGLVAG+N+AR +   D   F R +SY+GVMIDDL + GV EPY
Sbjct: 367 LAGQINGTTGYEEAAGQGLVAGLNAARLAGGSDLAIFDRAESYLGVMIDDLVTHGVSEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSR+EYR+SLR DNAD RLTP G  LGC+G  R   FA      +  R+ L +L LT
Sbjct: 427 RMFTSRSEYRLSLRVDNADERLTPRGAALGCVGSIRAAHFAASQAALSEARARLDTLSLT 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +   ++   DG  R+A++ LSYP+   + L ++ P+     S V ERL+ +++YA 
Sbjct: 487 PNEAAQHGLALNHDGLRRSAFQILSYPEIGWERLAAVWPELAAVPSRVAERLRTDATYAV 546

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  +    + +E   +P   DY ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 547 YLNRQQADITAFRRDEAVRLPTSLDYGAIAGLSNEMRVKLDGVRPTTLGQAARIEGVTP 605


>gi|221126291|ref|XP_002164847.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 607

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/598 (42%), Positives = 348/598 (58%), Gaps = 35/598 (5%)

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q N
Sbjct: 1   HLVKEVDAMGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRMLENQPN 60

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L + Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD
Sbjct: 61  LSLFQQAVDDLMVEGDRVVGAVTQVGIRFRGKTVVLTAGTFLDGKIHVGLNNYAAGRAGD 120

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIPFSFM 229
            P+ SL     +     GRLKTGTP R+DG++I + K  +Q  D       + +   SFM
Sbjct: 121 PPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKCIEQPGDGVPGGMSDVMPVVSFM 180

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            +  +  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++
Sbjct: 181 GNVAMHPQQVPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADK 240

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 241 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQYELVRSMAGLENAHILRPGYAIEYDYFDP 300

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  + ET++I GLF AGQINGTTGYEEAAAQG+ AGIN+A +    D     R  +Y+
Sbjct: 301 RSLKGSFETRQIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQVYSDDTWLPGRDQAYL 360

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G +LG +   R   F +  
Sbjct: 361 GVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADARLTEVGRELGLVDNARWDAFCRKR 420

Query: 469 QEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--- 522
              +     L+S  +  +NL    S  +  K         + L  P+ S   L S+    
Sbjct: 421 DAVSRETERLRSTWVNPRNLAADESERVLGKSIEHEYNLADLLRRPNVSYGGLMSLDHGK 480

Query: 523 PDARKFSSLV---------------------IERLQIESSYAAYTGRQMIEAKEIKFEEK 561
              R    +V                     +E+++I + Y+ Y  RQ  E +     E 
Sbjct: 481 YANRDLLDVVSRETAGLPTVDAAEVAFVAAVVEQVEIAAKYSGYINRQKDEVERAAHYEN 540

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             +P D DY  + ALS E +++LS  +P  L QAS++ G+TPA ++LL+I++KK   +
Sbjct: 541 LRLPDDLDYMQVTALSIEARQRLSKYRPETLGQASRLSGITPATISLLMIHLKKGNFR 598


>gi|254880986|ref|ZP_05253696.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_3_47FAA]
 gi|254833779|gb|EET14088.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_3_47FAA]
          Length = 662

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/623 (41%), Positives = 367/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 40  MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 99

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 100 IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 159

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 160 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 219

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C 
Sbjct: 220 LTESITRQGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCW 279

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 280 TCFTNEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 339

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 340 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 399

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 400 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 459

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +      +  + +    K+ 
Sbjct: 460 EPYRMFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVSRIIDFAKTF 519

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 520 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKALLDQITDRKEEV 579

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 580 IEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 639

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 640 AQASRIPGISPSDINVLLVLLGR 662


>gi|223983477|ref|ZP_03633663.1| hypothetical protein HOLDEFILI_00943 [Holdemania filiformis DSM
           12042]
 gi|223964649|gb|EEF68975.1| hypothetical protein HOLDEFILI_00943 [Holdemania filiformis DSM
           12042]
          Length = 620

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/620 (41%), Positives = 362/620 (58%), Gaps = 7/620 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGGHAG EAA + A+LG  TALI+     IG M CNP++GG  KG +VREIDAL 
Sbjct: 3   DVIVVGGGHAGIEAALITARLGCETALISLSLENIGKMPCNPSVGGPAKGIVVREIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G MG  AD   +QF++LN  KGP V+  R Q+D+  Y   MQ EI  QE L +I G   G
Sbjct: 63  GQMGITADQTALQFKMLNTTKGPGVQSLRVQSDKLAYARRMQEEIQRQERLRLILGICTG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   I+ I M+D  ++    V+LTTGT++   + I     P+G  G+  +N L  S 
Sbjct: 123 ILVENGKITGITMEDGQILEARAVILTTGTYMSSSVMISSEVTPSGPDGEPTTNKLSESL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE--CGITR 244
            +    T RLKTGTP R+  ++I + KT  Q   ++ + FS  T  I   + +  C +T 
Sbjct: 183 RQAGLKTFRLKTGTPPRVLTESIDFSKTTPQPGTDQFVAFSTTTQTIRKPEDQKLCYLTY 242

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH +I+ N+K S++YSG +K  GPRYCPSIEDK+VRF ++  HQIFLEPE    D 
Sbjct: 243 TTPQTHELILANLKKSSMYSGVVKGVGPRYCPSIEDKLVRFSDKPRHQIFLEPESEALDT 302

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST+LP ++Q   + ++PGLE   I +  YAIEYD I+P +L P+LET  +  LF
Sbjct: 303 TYVQGFSTSLPRDLQELMVHSLPGLEHAVIRKYAYAIEYDAIDPLQLKPSLETLVVENLF 362

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGL+AGIN+  K      +   R ++YIGVMIDDL +KG  EPY
Sbjct: 363 TAGQINGTSGYEEAAAQGLMAGINAVLKLRNQPPLVLRRDEAYIGVMIDDLVTKGTQEPY 422

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+ TSRAE+R+ LR DNAD RL   G +LG I E R + +     +   L+  LK+  LT
Sbjct: 423 RLLTSRAEFRLLLRHDNADQRLMRYGYELGSISEPRWQDYQHRRAQVEQLKEQLKTCRLT 482

Query: 485 SKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            K+    +   + +       +A E +  P  ++  L         F      + +IE  
Sbjct: 483 PKSPIQDALEEVGYAALTDGVSAEELVRRPHITVAMLKPALDF--DFDPAAAAQAEIELK 540

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   EA+++   +  ++P+D DY  +  LS E ++KL  ++P  L QAS+I G+
Sbjct: 541 YEGYINKARKEAEKMMAMDHVVLPEDLDYDQVQHLSLEGRQKLKAIQPHTLGQASRISGV 600

Query: 602 TPAALNLLLIYIKKNTVKLN 621
           +PA + +L + +++   K  
Sbjct: 601 SPADVAMLAMVLEQRHRKEQ 620


>gi|281422331|ref|ZP_06253330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella copri DSM 18205]
 gi|281403652|gb|EFB34332.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella copri DSM 18205]
          Length = 623

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/623 (39%), Positives = 359/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+VIGGGHAGCEAAA +A +GA T LIT   + IG MSCNPAIGG+ KG +VRE
Sbjct: 1   MKFNYDVLVIGGGHAGCEAAAASANMGAKTCLITMDMNKIGQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN+ KGPAV  PR Q DR  +    +  +   +NLD+ Q
Sbjct: 61  IDALGGQMGIVTDKTAIQFRMLNIGKGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +             +     +     ++++T GTFL G++H+G+  +  GR  +   ++
Sbjct: 121 DQADELLVADGEAIGVKTIWGAEFYAKSIIITAGTFLNGLMHVGRKMVEGGRCAEPAVHN 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S  ++   T R+KTGTP R+D +++ ++  E+Q  D     FS+M +    +Q+ C 
Sbjct: 181 FTESITRWGITTARMKTGTPVRIDKRSVHFEDMEEQPGDSDFHQFSYMGEHRVLKQLPCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN + H  +   +  S +Y+G I+S GPRYCPSIE K+V F +++ H +FLEPEG +
Sbjct: 241 TCYTNKKVHETLKSGLADSPLYNGQIQSTGPRYCPSIETKLVTFPDKDQHPLFLEPEGED 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T+ +Y NG S+++P +IQ   +  IP L    I RPGYAIEYDY +P +L  +LE+K I 
Sbjct: 301 TNEMYLNGFSSSMPMDIQLNALHEIPALRDAKIYRPGYAIEYDYFDPTQLKHSLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGTTGYEEA  QG VAGIN+A           +R +SYIGV+IDDLT+KGV 
Sbjct: 361 GLFFAGQVNGTTGYEEAGGQGTVAGINAALHCVGDKTFEMNRDESYIGVLIDDLTTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG     R   + +  +    +     + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADARLTEKAYELGIAKRDRYDWWIEKKEAIGRIIEFCANY 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR---KFS----SLV 532
            +    ++    ++            + ++ P  ++ NL  I PD +   +        +
Sbjct: 481 PIKKDEINPKLEALGTTPLRAGCKLIDLIARPHLNLTNLSEIIPDLKTALEIPANRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E  +I+  Y  Y  R+ + A ++   E   I   F+YS L  +S E ++KL  + P  L
Sbjct: 541 AEAAEIKMKYKGYIERERLIADKMHRLEDIKIKGRFNYSELHEISTEGRQKLERIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N++L+ + +
Sbjct: 601 AQASRIPGVSPSDINVMLVLLGR 623


>gi|41058573|gb|AAR99270.1| glucose-inhibited division protein A [Candidatus Blochmannia
           pennsylvanicus]
          Length = 594

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/588 (46%), Positives = 363/588 (61%), Gaps = 7/588 (1%)

Query: 38  TSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ 97
             T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R Q
Sbjct: 1   IDTLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQ 60

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGT 156
           AD+ LYR A++  +  Q+ L VIQ  V       N I  ++  +       ++VVLTTGT
Sbjct: 61  ADKILYRQAIRSILEYQKFLLVIQASVEDLIVSGNKIVGVITPKLGMKFSGTSVVLTTGT 120

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           FL G IHIG      GR GDS S+SL +    +  F   RLKTGT  R+  K I +    
Sbjct: 121 FLNGKIHIGMNNFRGGRSGDSESSSLLSERLKELSFQISRLKTGTSPRVHTKGINFGSLR 180

Query: 216 KQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
            Q++D+ +  FSF+ + K+   Q+ C IT TN +TH I+  N+  S +Y+G IK   PRY
Sbjct: 181 AQYSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIVRSNLYQSPMYTGLIKGIAPRY 240

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   I
Sbjct: 241 CPSIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMQMIKSIQGLENACI 300

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           IRPGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S 
Sbjct: 301 IRPGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSK 360

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG
Sbjct: 361 NKEGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLG 420

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFK-QDGKTRTAYEFLSYP 511
            I E R K F    +     R  L++  +     +++  +   K          + L  P
Sbjct: 421 LIDESRWKAFCCKKENIEKERQRLRNTYIFPYSSDVAQLNNFLKTPLTHETNGEDLLRRP 480

Query: 512 DFSIQNLFSICPDARK-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           + + + L  +   +       V E+++I+  Y  Y   Q  E K   + E  L+P D D+
Sbjct: 481 EINYKKLSQLSTFSPSILDRQVFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDIDF 540

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           + +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 NIVSGLSQEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKKQGL 588


>gi|189460231|ref|ZP_03009016.1| hypothetical protein BACCOP_00868 [Bacteroides coprocola DSM 17136]
 gi|189433092|gb|EDV02077.1| hypothetical protein BACCOP_00868 [Bacteroides coprocola DSM 17136]
          Length = 623

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/623 (40%), Positives = 358/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V           ++LT GTFL G++HIG   +  GR  +  S  
Sbjct: 121 DTVEELLVENGEVTGLVTCWGVTFHAKCIILTAGTFLNGLMHIGHKMLAGGRCAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+D +++ +   E Q  +     FSF+++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDARSVDFSLMETQDGENDFHRFSFISEPRQLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCYTNEEVHEVLRSGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ IP    +   RPGYAIEYDY +P +L  TLE+K + 
Sbjct: 301 TQELYLNGFSSSLPMDIQFAALKKIPCFRNIVAYRPGYAIEYDYFDPTQLKHTLESKVVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFVLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG   + R  R  +  +E   L    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERSYKLGLASKERYDRLCQKREEIQRLVEFAKTY 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-------KFSSLV 532
            + +  ++     +   +        E LS P  +I+N+    P  +             
Sbjct: 481 SIKADKINDALEGLGTARLTHGCKLIELLSRPQITIENIAPHVPSFQAALDKVTDRKEET 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A +I   E   I   FDY++L +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYANLNSLSTEARQKLIKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|218780478|ref|YP_002431796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761862|gb|ACL04328.1| glucose inhibited division protein A [Desulfatibacillum
           alkenivorans AK-01]
          Length = 628

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/624 (41%), Positives = 371/624 (59%), Gaps = 5/624 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD+IVIG GHAGCEAA  AA++G  T L T    ++  M C+P+IGG GKG LV+E
Sbjct: 1   MCKRYDIIVIGAGHAGCEAALAAARMGCKTLLTTIHLDSVAGMPCSPSIGGTGKGQLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M RV D   + +R LN +KGPAV+  RTQ D+ +Y   M++ +  Q NLD+ Q
Sbjct: 61  VDALGGAMARVTDRTAMSYRTLNTRKGPAVQSTRTQNDKHMYHQMMKQCVEDQPNLDLKQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            ++     + + ++ +V       +   V+L TGTFL GVIHIG   + AGR G+  S S
Sbjct: 121 AKINRLVLDGDRVAGVVDHFGYEYQAEAVILATGTFLSGVIHIGHKSMKAGRAGEFASYS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +  M+  F  GR+KTGTPAR+   +I +   E+Q  +E   PFS  +       +   
Sbjct: 181 LASHLMELGFAMGRMKTGTPARVAKDSIDFSCFEEQAGEENPRPFSLFSKASLLTPMSSF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
             RTN  THRII +N+  SA+Y G +K    RYCPS EDKIV+F ER  HQI LE EG++
Sbjct: 241 NGRTNERTHRIIRDNLSCSALYGGIVKGVSARYCPSFEDKIVKFPERESHQIILEHEGVH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y +G+  ++P E+Q +  R+IPG+E+V I+RP YAIEYD+++P  L PTLETK + 
Sbjct: 301 TREIYVSGLGNSMPLEVQIKLYRSIPGMEQVEIMRPAYAIEYDFLHPTGLKPTLETKLVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AGQINGT+GYEEA AQG+ AGIN+A K          R+++Y+ VM+DDL ++G  
Sbjct: 361 GLYAAGQINGTSGYEEAGAQGMWAGINAACKIQGRPPFLPDRSEAYMAVMVDDLVTRGTS 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYR+ LR DN D RL   G  LG I +   K   +  ++       ++S 
Sbjct: 421 EPYRMFTSRAEYRLMLREDNPDLRLMEYGHGLGLIDDDAFKDLIERKKQIQAELDRVRST 480

Query: 482 VLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++      +  +  K      +       +         +  + P     +  V  +++I
Sbjct: 481 IIKPLPEVNQYLEDKGTAPLKEAAPLDRLMKRVQLGYDAVEKLAPSPEPINPRVSRQVEI 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  Y  +Q+ E ++ +  E+  IP+ FD+ ++  LSNELK KL  LKP +L QAS++
Sbjct: 541 AIKYEGYIAKQLREIEKFREMERVRIPEGFDFEAVHGLSNELKAKLGALKPVSLGQASRM 600

Query: 599 EGMTPAALNLLLIYIKKNTVKLNE 622
           EG+TPAAL+ ++I++  + VK  E
Sbjct: 601 EGITPAALSAVMIHL--HQVKNTE 622


>gi|150003782|ref|YP_001298526.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus ATCC 8482]
 gi|294777394|ref|ZP_06742845.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus PC510]
 gi|166222908|sp|A6KZP0|MNMG_BACV8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149932206|gb|ABR38904.1| glucose-inhibited division protein A [Bacteroides vulgatus ATCC
           8482]
 gi|294448462|gb|EFG17011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides vulgatus PC510]
          Length = 623

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/623 (41%), Positives = 367/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 121 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTF 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 481 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|189183418|ref|YP_001937203.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Orientia tsutsugamushi str. Ikeda]
 gi|238692238|sp|B3CR62|MNMG_ORITI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189180189|dbj|BAG39969.1| glucose inhibited division protein A [Orientia tsutsugamushi str.
           Ikeda]
          Length = 622

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/589 (50%), Positives = 395/589 (67%), Gaps = 2/589 (0%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G   ALIT K   +G M CNPAIGG GKGH+V+E+DALDGL+G +AD AGI +++LN 
Sbjct: 24  RIGVKVALITLKPENLGEMPCNPAIGGRGKGHIVKEVDALDGLIGYIADQAGIHYKMLNH 83

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAV GPR Q DR LY+ AM   I++  NL  I   V       N ++++++ +   I
Sbjct: 84  TKGPAVWGPRAQIDRALYKSAMYSTIMNYPNLTTIFASVEDIKVIANKVTAVIV-NGKEI 142

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
            C  V+LTTGTFL GVIH GK +I AGR+G++ S  L N+  +     GRLKTGTP R+D
Sbjct: 143 YCQKVILTTGTFLSGVIHRGKEQIKAGRLGENASYGLSNTLSELGLRLGRLKTGTPPRID 202

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +TI + K E+Q  D    PFS +T K+   QI+C ITRTN  TH+II EN+  SA+YSG
Sbjct: 203 SRTIDYSKLEEQPGDLIPTPFSEITKKVLVPQIKCYITRTNEITHKIIKENLHLSAMYSG 262

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKI+RF     HQIFLEPEGLN++ +YPNGIST+LP ++Q   IRT
Sbjct: 263 QIQGTGPRYCPSIEDKIIRFSHNASHQIFLEPEGLNSNTIYPNGISTSLPSDVQENMIRT 322

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   II  GYAIEYDY++P++L  +LE K + GL+LAGQINGTTGYEEAA QG++A
Sbjct: 323 IEGLENCKIIAYGYAIEYDYVDPRQLKRSLEVKSVDGLYLAGQINGTTGYEEAAGQGIMA 382

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A    K D     RTD+YIGVMIDDLT+ G+ EPYRMFTSR+EYR+S+R DNAD R
Sbjct: 383 GINAALAVKKQDPFILDRTDAYIGVMIDDLTN-GIDEPYRMFTSRSEYRLSIRADNADQR 441

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LTP  + LGC+ + R++ F K + + N LR  ++SL +T K L +      Q+G  RTA+
Sbjct: 442 LTPKAIDLGCVSQLRKEVFQKKLSKLNTLRDYVQSLTITPKQLQNCGYQISQNGIARTAF 501

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             L  P+F I  +  I P+  ++ + ++  L  ES Y AY  RQ  +    K EE   IP
Sbjct: 502 SLLGLPNFGINIVKDIYPELNRYDNNLLLLLTYESKYHAYLERQKEDIVLFKQEETYQIP 561

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +D +Y  +P+LS E++EKL   +P  +  A  I G+TP+A+  ++I++K
Sbjct: 562 QDLNYDQIPSLSIEVREKLKQSQPETIRAAKHINGVTPSAIMAIIIFLK 610


>gi|224023518|ref|ZP_03641884.1| hypothetical protein BACCOPRO_00220 [Bacteroides coprophilus DSM
           18228]
 gi|224016740|gb|EEF74752.1| hypothetical protein BACCOPRO_00220 [Bacteroides coprophilus DSM
           18228]
          Length = 623

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/623 (41%), Positives = 361/623 (57%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N +YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFNYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V           VVLT GTFL G++HIG+  +  GR  +  S  
Sbjct: 121 DTVEELLVENGEVTGVVTCWGVTFHAKCVVLTAGTFLNGLMHIGRKMLAGGRCAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+D +++ +D  E Q  +     FS++++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDARSVHFDLMETQDGENDFHRFSYISEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H  +   +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCYTNEEVHDTLRSGLADSPLYNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP EIQ + ++ IP    + + RPGYAIEYDY +P +L  TLE+K + 
Sbjct: 301 TRELYLNGFSSSLPMEIQLEALKKIPCFRDLVVYRPGYAIEYDYFDPTQLKHTLESKIVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ+NGTTGYEEA  QG++AGIN+       +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFFAGQVNGTTGYEEAGGQGIIAGINAHINCQGGEPFVLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG + + R  +     +E   +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYRLGLVKQDRYDKLCSKREEIERIVEFAKTY 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + +S P  +I N+    P  +            +
Sbjct: 481 SIKADKINDALESLGTARLTHGCKLIDIISRPQITIDNIAPHVPAFQALLDRIEDRKEEI 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  +I   Y  Y  R+   A +I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEIRIKYKGYIDRERTIADKIHRLESIRIKGKFDYASLQSLSTEARQKLVKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDVNVLLVLLGR 623


>gi|187251664|ref|YP_001876146.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Elusimicrobium minutum Pei191]
 gi|186971824|gb|ACC98809.1| Glucose-inhibited division protein [Elusimicrobium minutum Pei191]
          Length = 587

 Score =  688 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/618 (44%), Positives = 373/618 (60%), Gaps = 37/618 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAGCEAA  +A+LGA T LIT    TI  MSCNP+IGG+ KG +VREIDA
Sbjct: 7   QYDVIVVGGGHAGCEAALASARLGAKTLLITQNLDTIAQMSCNPSIGGVAKGQIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG++ DAAG+ + +LN  KGPAV  PR Q D+++Y+   +  +  Q NL++IQ EV
Sbjct: 67  LGGAMGKITDAAGLHYHMLNTGKGPAVHSPRVQCDKKIYQAEYKHTLEKQPNLELIQDEV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +++  +V    +      V+LTTGTFL GVIHIG +  P GR GD+PSN L  
Sbjct: 127 KELYFEGSVLKGVVTLRGTKYLSKVVILTTGTFLGGVIHIGGVSFPGGRYGDTPSNFLTE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K D +  R KTGTP R++ K + +    +Q +D    P S  T       + C ITR
Sbjct: 187 SLKKTDLNVLRFKTGTPMRINAKDVDFSVFREQPSDNPFEPMSIFTAPFERNFLSCYITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH I+  N+K SA+YSG I + GPRYCPS+EDKIV+F +   H IFLEPEG NT  
Sbjct: 247 TTEKTHEILKRNMKRSALYSGQITALGPRYCPSVEDKIVKFDQAPSHPIFLEPEGFNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y  G ST++PE++Q + + ++PGLEK  + R GYAIEYD+++P EL+ TLE KKI GL+
Sbjct: 307 YYIQGFSTSMPEDVQRELLISVPGLEKAKLTRAGYAIEYDFVDPMELYATLEVKKIPGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGTTGYEEA AQGL+AG+N+  K N  + +   R  +Y GVMIDDL +KGV EPY
Sbjct: 367 HAGQINGTTGYEEAGAQGLIAGLNAVLKINGKEPVILGRDTAYTGVMIDDLVNKGVNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR DNAD RLT IG K G + +  ++ F +Y +     +S  K+    
Sbjct: 427 RMFTSRAEYRIMLRSDNADLRLTDIGFKTGLVAKEYKQSFEEYKKAVEVFKSNPKAEFEA 486

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
               +    S ++                                        I++ Y+ 
Sbjct: 487 VNMPAWRVESARKTAV-------------------------------------IDAMYSG 509

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  R   +A+++   +K +IP+ FD S++  +  E  +KL  ++P  L QAS+I G+TPA
Sbjct: 510 YYDRFKKDAEKLAQADKIIIPEGFDPSAVKGILIESSQKLKKVRPQTLGQASRIPGVTPA 569

Query: 605 ALNLLLIYIKKNTVKLNE 622
            + LL ++I++  +  N+
Sbjct: 570 DIQLLAVHIERYRLSKNK 587


>gi|41058576|gb|AAR99272.1| glucose-inhibited division protein A [Candidatus Blochmannia
           chromaiodes]
          Length = 594

 Score =  688 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/588 (45%), Positives = 362/588 (61%), Gaps = 7/588 (1%)

Query: 38  TSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ 97
             T+G MSCNPA+GG+GKGHLV+EIDA+ G M    D +GIQFRVLN  KG AVR  R Q
Sbjct: 1   IDTLGQMSCNPAVGGIGKGHLVKEIDAMGGSMAYAIDQSGIQFRVLNSSKGAAVRATRAQ 60

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGT 156
           AD+ LYR A++  +  Q+ L VIQ  V       N I  ++  +       ++VVLTTGT
Sbjct: 61  ADKILYRQAIRSILEYQKFLLVIQASVEDLIVSGNKIVGVITPKLGMKFSGTSVVLTTGT 120

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           FL G IHIG      GR GDS S+SL +    +      RLKTGT  R+  K I +    
Sbjct: 121 FLNGKIHIGMNNFRGGRSGDSESSSLLSERLKELSLQISRLKTGTSPRVHTKGINFGSLR 180

Query: 216 KQFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
            Q++D+ +  FSF+ + K+   Q+ C IT TN +TH I+  N+  S +Y+G IK   PRY
Sbjct: 181 AQYSDDPIPVFSFIGSTKLHPTQVPCYITHTNNKTHEIVRSNLYQSPMYTGLIKGIAPRY 240

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDKI RF +RN HQIFLEPEGL T  VY NGIST+LP  +Q Q I++I GLE   I
Sbjct: 241 CPSIEDKITRFSDRNAHQIFLEPEGLTTPEVYLNGISTSLPFCVQMQMIKSIQGLENACI 300

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           IRPGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S 
Sbjct: 301 IRPGYAIEYDFFDPRDLKLTLESKIISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQ 360

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG
Sbjct: 361 NKEGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTEIARQLG 420

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFK-QDGKTRTAYEFLSYP 511
            I E R K F    +     R  L++  +     +++  +   K          + L  P
Sbjct: 421 LIDESRWKAFCCKRENIEKERQRLRNTYIFPYSSDVAQLNNFLKTPLTHETNGEDLLRRP 480

Query: 512 DFSIQNLFSICPDARK-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           + + + L  +   +       V E+++I+  Y  Y   Q  E K   + E  L+P D D+
Sbjct: 481 EINYKKLSQLSTFSPSILDRQVFEQIEIQIKYEGYIRHQQEEIKRHIYNENTLLPTDIDF 540

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           + +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 NIVSGLSQEVIDKLNNYKPYSIGQASRISGITPAAISNLLVWLKKQGL 588


>gi|319639994|ref|ZP_07994721.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_1_40A]
 gi|317388272|gb|EFV69124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_1_40A]
          Length = 623

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/623 (41%), Positives = 367/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 121 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DG+++ +D  E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITRQGITAGRMKTGTPVRIDGRSVHYDLMETQDGENDFHRFSFMSEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H I+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHEILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +      +  + +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVSRIIDFAKTF 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 481 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKALLDQITDRKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A +I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIADKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|309791316|ref|ZP_07685839.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oscillochloris trichoides DG6]
 gi|308226626|gb|EFO80331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Oscillochloris trichoides DG6]
          Length = 677

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 359/649 (55%), Gaps = 33/649 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YD+IV+G GHAGCEAA  AA++G  T L+T     IG M CNP+IGG  KGHLVRE
Sbjct: 29  MHYLYDIIVVGAGHAGCEAANAAARMGCRTLLLTIDLDKIGYMPCNPSIGGPAKGHLVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLM RV D + IQ RVLN  KGPAV+  R QAD+  Y   M+  +    NLDV Q
Sbjct: 89  IDALGGLMARVTDQSAIQIRVLNESKGPAVQSLRAQADKRHYAQVMKETLEQVPNLDVRQ 148

Query: 122 GEVAGFNTEKNIISS--------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             V         + S        +        +   +VLT GTFLRG +  G+   PAGR
Sbjct: 149 AMVEQIRMLAAEVDSDLTPYAFQVQTHTGYTYQARALVLTVGTFLRGRVITGEATWPAGR 208

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            G++P+ +L  +     F   RLKTGTP R+   +I + +T+ Q      + F     + 
Sbjct: 209 AGEAPAVALGENLAALGFPLVRLKTGTPPRVHAASIDFSQTDIQQGSRVPVAFGHYGPQE 268

Query: 234 ---------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
                                   Q+ C +  T  + H II +N+  + ++SG I   GP
Sbjct: 269 RLPNPFTGPPCPYFPNPQRDGWRPQLPCYLVHTTPQFHAIIRDNLHRAPLFSGVIAGVGP 328

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDKIVRF +++ H +FLEPEG  T  VY  G +T+LPE++Q   +R+IP L   
Sbjct: 329 RYCPSIEDKIVRFADKDRHGLFLEPEGWTTSEVYVQGCNTSLPEDVQWAMLRSIPALRNA 388

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            ++R GYAIEYD +   E+   L+ ++++GLFLAGQ+NGTTGYEEAAAQGL+AGIN+ R 
Sbjct: 389 ELMRIGYAIEYDAVASGEIGADLQARRMAGLFLAGQVNGTTGYEEAAAQGLIAGINAVRY 448

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
             +   +   R  +YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD RLTP+  +
Sbjct: 449 VRRQPAVILGRDQAYIGVLIDDLVTKEITEPYRMFTSRAEHRLLLRGDNADLRLTPLAYE 508

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLS 509
           LG +G  R     +  +    L   L    L      N + T +      +  +  + L+
Sbjct: 509 LGLVGAERLAAVEQKREAVAQLYGQLAGQRLFPTLAFNTALTEVGVDPLSQPMSVIDLLA 568

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
            P      L ++  D     + VIE+L+I + Y  Y  RQ  E   ++  E R IP   D
Sbjct: 569 RPHVKYPQLQALL-DLPVADAGVIEQLEISAKYGGYIERQQREVDRLRKMESRRIPATLD 627

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           Y+SLP L NE ++ L   +P  L QA ++ G+TPA + +LL  +++  V
Sbjct: 628 YTSLPGLRNEARQVLLRFRPATLGQAGRLAGITPADVTILLFALERQGV 676


>gi|115629241|ref|XP_783517.2| PREDICTED: similar to MGC139179 protein [Strongylocentrotus
           purpuratus]
 gi|115945892|ref|XP_001186832.1| PREDICTED: similar to MGC139179 protein [Strongylocentrotus
           purpuratus]
          Length = 1272

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/641 (44%), Positives = 391/641 (60%), Gaps = 31/641 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+GGGHAGCEAA V+A++GA T L+THK  TIG MSCNP+ GG+GKGHL+REI
Sbjct: 70  KERYDVIVVGGGHAGCEAAGVSARMGAQTLLLTHKIETIGVMSCNPSFGGIGKGHLMREI 129

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+  R+ D AGIQ++VLN +KGPAV G R Q DR+ Y+  MQ EIL+  NL V   
Sbjct: 130 DALDGISARLCDKAGIQYKVLNRRKGPAVWGLRAQIDRDQYQSYMQDEILNTPNLTVRAA 189

Query: 123 EVAGFNT-------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            V                  +K + S +V+++   IR S VV+TTGTFLRG IH+G  + 
Sbjct: 190 PVEDLIIQGEDAAEMDGCHGDKPVCSGVVLENGETIRSSAVVITTGTFLRGEIHLGVERR 249

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
           PAGR+GD PS  L        F  GRLKTGTP RLDG+TI + +      D   IPFSFM
Sbjct: 250 PAGRIGDEPSVGLAKRIEDAGFTLGRLKTGTPPRLDGRTIDYSELTPNHGDMPPIPFSFM 309

Query: 230 TDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           TD++      Q+ C +T +N E HRI ++N   +       ++ GPRY   I   I+   
Sbjct: 310 TDRVAIQPEDQVICHLTHSNHEVHRICIDNQHLNVHVQE--EANGPRYETFILKAILVLP 367

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            R  H I   P+GLNTD+VY  G S  LP ++Q + + +I GLE   + +PGY +EYDY+
Sbjct: 368 NR-LHGIPDRPKGLNTDIVYMQGFSVTLPPDLQEKCVNSIKGLENATMTKPGYGVEYDYV 426

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P+E+ P+LET KI  LF AGQINGTTGYEEAAAQG++AGIN+  K+ +      SRT+ 
Sbjct: 427 DPREIKPSLETLKIPRLFFAGQINGTTGYEEAAAQGIIAGINAVLKARRRPPFTISRTEG 486

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGV+IDDLT++G  EPYRMFTSR E+R++LRPDNAD RLT  G   GC+ + R +   +
Sbjct: 487 YIGVLIDDLTTRGTSEPYRMFTSRTEFRMTLRPDNADLRLTHRGFAAGCVSQERFEHTME 546

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSST--------SISFKQDGKTRTAYEFLSYPDFSIQNL 518
             +     +SLL+S+ L  +             +    +  +  +A + L +P  ++ +L
Sbjct: 547 TRKALEESKSLLRSVKLHRQEWRRHLENHGVQSAFGNSKSPEKMSAMDILQFPGLTVHHL 606

Query: 519 FSICPD---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
            +  P    AR     + ERL+IE  YA    +Q     E++ +E+  +P+D DY+SL  
Sbjct: 607 AAALPSESLARLEDHRLAERLKIEGIYAPLIPQQEAAIAEVQADEELELPEDLDYTSLK- 665

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           LS E   KL+  +P  +  AS++EG+TPAA+  LL ++K+ 
Sbjct: 666 LSTEAIYKLTQARPTTIGAASRLEGVTPAAVLRLLYHVKRQ 706


>gi|313665756|ref|YP_004047627.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
 gi|312949569|gb|ADR24165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
          Length = 629

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/621 (40%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG+ ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I  QENLD+I 
Sbjct: 61  IDALGGEMGKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKKQENLDLIT 120

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G   + +  ++ I ++D   +    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 KACTGLVYDDSKNVTGIYLEDQITLNAKVVIITTGTYLKSEILKGVDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++   +   +   +  + FSF T+  T   +Q 
Sbjct: 181 GISKSLIDLGIKLMRFKTGTPARVYRDSVDLSRATIEPGTDMKLAFSFSTNTYTPIEQQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE
Sbjct: 241 PCYLIHSTLETKKIIQDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVKNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +   + +  Y++E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDTEWEEYLSYVKEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K+        + YE +  P   I  L    P  ++  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKKQADLSHGYSGYEIIKIPTVDINELIEFIPSLQRLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP + +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKECQLVDKLVKLERKKIPLNINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|312890488|ref|ZP_07750024.1| glucose inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
 gi|311296946|gb|EFQ74079.1| glucose inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
          Length = 620

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/620 (43%), Positives = 381/620 (61%), Gaps = 6/620 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + Y+VIV+G GHAGCEAAA AA LG+S  LIT    TI  MSCNPA+GG+ KG +VRE
Sbjct: 1   MFKKYNVIVVGAGHAGCEAAAAAANLGSSVLLITMNMGTIAQMSCNPAMGGVAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G ++D   IQFR+LN+ KGPA+  PRTQ DR  +    +  +    N+D  Q
Sbjct: 61  IDALGGYSGIISDKTSIQFRMLNLSKGPAMWSPRTQNDRMRFAEEWRLALERTPNVDFWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + N +S +       I    VVLT GTFL GVIHIG+ K   GR G+  +  
Sbjct: 121 DTVTSLLIKGNTVSGVKTSLGVEIESDAVVLTNGTFLNGVIHIGEKKFGGGRTGEKAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L    +   F+ GR+KTGTP R+DG+++ +   E+Q+ DE+   FS+   K+   Q  C 
Sbjct: 181 LTEQLVTLGFEAGRMKTGTPPRVDGRSLNYTLMEEQWGDEKRGRFSYTDVKLMEEQRCCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TN + H  + E  + S +++G IK  GPRYCPSIEDKI RF ER+ HQIF+EPEG +
Sbjct: 241 ITYTNNKVHETLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERDRHQIFVEPEGAH 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG ST+LPE++Q++ +  IPG E V + RPGYAIEYDY  P +L  TLETK IS
Sbjct: 301 TVEIYVNGFSTSLPEDVQYKALIQIPGFENVRMFRPGYAIEYDYFPPIQLGLTLETKLIS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGTTGYEEAA+QGL+AGIN+ +K +    +   R++SYIGV+IDDL +KG  
Sbjct: 361 NLFFAGQINGTTGYEEAASQGLIAGINAHQKVHDKHELIMKRSESYIGVLIDDLVTKGTE 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+ LR DNAD RL+PIG  LG I + R  +  + I   + + + +K+ 
Sbjct: 421 EPYRMFTSRAEHRLLLRQDNADIRLSPIGFNLGLISQERLDKVNQKITNSDVIVNFVKNK 480

Query: 482 VLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF----SSLVIER 535
            + + +++S    +      +       +  P     +L  +            +  +E+
Sbjct: 481 SIDASDVNSLLEELGTSPLNQNVKMVSLIGRPQVGFNDLRKVDQSLNDLLANYDNETVEQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +I+  Y +Y  ++M     +K  E + I  +F+Y  L +LS E +EKL  +KP  L QA
Sbjct: 541 AEIKIKYESYFEKEMDIVNRMKKMEDKEINPEFNYHQLVSLSKEAREKLMRIKPRTLGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L++++ +
Sbjct: 601 SRISGVSPSDISVLMVHVSR 620


>gi|158520974|ref|YP_001528844.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Desulfococcus oleovorans Hxd3]
 gi|158509800|gb|ABW66767.1| glucose inhibited division protein A [Desulfococcus oleovorans
           Hxd3]
          Length = 623

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/617 (41%), Positives = 376/617 (60%), Gaps = 3/617 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  ++YD+IV+G GHAGCEAA  AA++G +  L+      + +M C+P+IGG  KGHLV+
Sbjct: 3   IYEKTYDIIVVGAGHAGCEAALAAARMGCAVLLLAIDLDKVAAMPCSPSIGGTAKGHLVK 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M + AD   I  +VLN KKGPA+   RTQ D+  Y  AM++ + +  N+D+ 
Sbjct: 63  EIDALGGEMPKAADKTAIHCKVLNTKKGPAIHSSRTQNDKHRYHTAMKQSVEAHANIDLK 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
              V     E   +  ++ Q     + + V++T GTFL G++HIG     AGR G+  + 
Sbjct: 123 AALVTRIIVEGGSVKGVIDQTGFSWQATCVIITAGTFLGGLVHIGTHSHHAGRAGEFAAL 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L +   +  F TGR+KTGTP RL   +I + K E Q +D    PFS  T  +   +   
Sbjct: 183 ELADCLRELGFATGRMKTGTPPRLSRPSIDFSKFEMQGSDADFRPFSAATRALELPRRPN 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +      +  I+  N+ HSA+YSG I     RYCPS EDK+VRF ER  H + LE EGL
Sbjct: 243 YLGHIRENSIAIVRNNLAHSALYSGRITGTPARYCPSFEDKVVRFPERTAHHLILEFEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++D +Y +G+  +LP EIQ  F+R++ GLE   I+RP YAIEYDYINP +L PTLETK +
Sbjct: 303 DSDEIYASGLGNSLPMEIQLAFVRSVEGLECAEIMRPAYAIEYDYINPTQLLPTLETKPV 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           +GL+LAGQ+NGT+GYEEAAAQG+ AGIN+A +  K       R+++Y+GVMIDDL ++G 
Sbjct: 363 AGLYLAGQVNGTSGYEEAAAQGMWAGINAACRVQKRPPFVLDRSEAYMGVMIDDLVTRGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RL   G++LG + +   +R   Y          +K+
Sbjct: 423 SEPYRMFTSRAEYRLLLREDNADLRLAEKGLELGLVDKETVERIRGYKHRIKAEIQRVKT 482

Query: 481 LVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            V+   + ++  ++ +Q     +   A + L   + +  ++ ++ P        V ++++
Sbjct: 483 TVIKPDDKTNALLARRQSPPLTSGSRADQLLKRSEITYADIKTLAPPETPLPERVEQQVE 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE  Y  Y  RQ  E  + K  E   IP+ FDY+++  LSNELK +L+ ++P +L QA++
Sbjct: 543 IEVKYEGYIDRQRREIAKFKDLEMIRIPEGFDYTAVHGLSNELKTRLADMRPLSLGQAAR 602

Query: 598 IEGMTPAALNLLLIYIK 614
           IEG+TPAA+++L+I IK
Sbjct: 603 IEGITPAAISVLMIGIK 619


>gi|198274089|ref|ZP_03206621.1| hypothetical protein BACPLE_00226 [Bacteroides plebeius DSM 17135]
 gi|198273167|gb|EDY97436.1| hypothetical protein BACPLE_00226 [Bacteroides plebeius DSM 17135]
          Length = 623

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/623 (41%), Positives = 363/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDKTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENLPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V           VVLT GTFL G++HIG   +  GR  +  S  
Sbjct: 121 DTVEELLVENGEVTGVVTCWGVTFHAKCVVLTAGTFLNGLMHIGHKMLAGGRCAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DGK++ +D  + Q  +     FSF+++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDGKSVHFDLMDTQDGENDFHRFSFISEPRHLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H  + + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHDTLRKGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ + ++ IP  + + + RPGYAIEYDY +P +L  TLE+K + 
Sbjct: 301 TQELYLNGFSSSLPMDIQLEALKKIPCFKDLVVYRPGYAIEYDYFDPTQLKHTLESKVVK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFFAGQVNGTTGYEEAGGQGIIAGINAHLNCHGGEPFVLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    +LG +   R +   K   E + + + + + 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYQLGLVKADRYEILQKKRAEIDRIVNFVSTF 480

Query: 482 VLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-------RKFSSLV 532
            + +  ++     +            + +S P  +I+N+    P          +    V
Sbjct: 481 SVKADKINDALEKLGTAPLTHGCKLVDLISRPQITIENIAPYIPAFQAALDKIEERKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  +I   Y  Y  R+   A +I   E   I   FDY++L +LS E ++KL  + P  L
Sbjct: 541 IEAAEIRIKYKGYIDRERTIADKIHRLESIRIKGKFDYANLQSLSTEARQKLVKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGVSPSDINVLLVLLGR 623


>gi|41058579|gb|AAR99274.1| glucose-inhibited division protein A [Candidatus Blochmannia
           castaneus]
          Length = 598

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/586 (45%), Positives = 357/586 (60%), Gaps = 7/586 (1%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPA+GG+GKGHLV+EIDA+ G+M   AD AGIQFR+LN  KG AVR  R QAD
Sbjct: 1   TLGQMSCNPAVGGIGKGHLVKEIDAMGGVMAYAADKAGIQFRILNSSKGAAVRATRAQAD 60

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFL 158
           + LYR  ++  +  Q+ L +IQ  V     +KN I  +V+ +       ++VVLTTGTFL
Sbjct: 61  KILYRQVIRSVLEYQKFLSIIQASVEDLIIDKNKIVGVVVPKIGMKFSSTSVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GD  S+SL             RLKTGT  R+    I +     Q
Sbjct: 121 NGKIHIGMKNFSGGRAGDVESSSLLSERLKGLSLRVNRLKTGTSPRVHANGINFGSLIAQ 180

Query: 218 FADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           ++D  +  FSFM     +  Q+ C IT TN  TH I+  N+  S +Y+G IK   PRYCP
Sbjct: 181 YSDNPIPVFSFMGSTEQHPAQVPCYITHTNNNTHEIVRSNLYQSPMYAGLIKGRSPRYCP 240

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI RF +R+ HQIFLEPEGL T  +Y NGIST+LP  +Q Q IR+I GLE V+IIR
Sbjct: 241 SIEDKITRFADRDAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIRSIRGLENVHIIR 300

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K +SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 301 PGYAIEYDFFDPRDLKLTLESKFVSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 360

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I
Sbjct: 361 EGWYPRRDQAYLGVLVDDLCTHGAEEPYRMFTSRAEYRLSLREDNADLRLTAIAQQLGLI 420

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
           G+ R K F    +     R  L++  +   +S  +   +       +     E L  P+ 
Sbjct: 421 GKTRWKAFCLKRENIEKERQRLRNTYIFPYSSDVVQLNNFLKTPLMREANGEELLRRPEI 480

Query: 514 SIQNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
               L  +           + E+++I+  Y  Y   Q  E ++  + E  L+P D D+  
Sbjct: 481 DYAKLSQLSTFGPCILDRQIFEQIEIQIKYEGYIRHQQEEIEKYIYNENTLLPTDIDFKV 540

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  LS E+ +KL+  +P+++ QAS+I G+TPAA++ LL+++K   +
Sbjct: 541 VSGLSKEVIDKLNDCRPYSIGQASRISGITPAAISNLLVWLKXQGL 586


>gi|218529837|ref|YP_002420653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium chloromethanicum CM4]
 gi|218522140|gb|ACK82725.1| glucose inhibited division protein A [Methylobacterium
           chloromethanicum CM4]
          Length = 624

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/571 (55%), Positives = 399/571 (69%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADAAGIQFR+LN +KGPAVR
Sbjct: 35  LVTHRAATIGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAAGIQFRLLNRRKGPAVR 94

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPRTQADR LY  AMQ  +     L VI+GE          ++ +++ D   +  + VV+
Sbjct: 95  GPRTQADRALYARAMQAAVAETPELTVIEGEADDLTVHSGRVAGVMLTDGRALTAAAVVI 154

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  +  +  F  GRLKTGTP RLDG+TI W 
Sbjct: 155 TTGTFLRGLIHIGERQIPAGRVGEEPAVGLARTLDRHGFRLGRLKTGTPPRLDGRTIDWA 214

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q AD   +PFS +T++IT  QI CGITRT    H +I  N+  S +YSG I S GP
Sbjct: 215 ALEMQHADAEPVPFSTLTERITTPQIACGITRTTQAVHDLIRANLHRSPMYSGGISSRGP 274

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK+VRFG+R GHQIFLEPEGLN   VYPNGISTALPEE+Q   I  IPGLE+ 
Sbjct: 275 RYCPSIEDKVVRFGDREGHQIFLEPEGLNDPTVYPNGISTALPEEVQAGIIAAIPGLERT 334

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            I+ PGYAIEYDY++P+EL  TL+TK++ GLFLAGQINGTTGYEEAA QGLVAG+N+AR 
Sbjct: 335 RILCPGYAIEYDYVDPRELDATLQTKRLPGLFLAGQINGTTGYEEAAGQGLVAGLNAARL 394

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D   F R +SY+GVMIDDL + GV EPYRMFTSR+EYR+SLR DNAD RLTP G  
Sbjct: 395 AGGSDLAIFDRAESYLGVMIDDLVTHGVSEPYRMFTSRSEYRLSLRVDNADERLTPRGAA 454

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+G  R   FA      +  R+ L +L LT    +   ++   DG  R+A++ LSYP+
Sbjct: 455 LGCVGSVRAAHFAASQAALSEARARLDTLSLTPNEAAQHGLALNHDGLRRSAFQILSYPE 514

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
              + L ++ P+       V ERL+ +++YA Y  RQ  +    + +E   +P   DY +
Sbjct: 515 IGWERLAAVWPELAAVPPRVAERLRTDATYAVYLNRQQADITAFRRDEAVRLPTSLDYGA 574

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           +  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 575 IAGLSNEMRAKLDGVRPTTLGQAARIEGVTP 605


>gi|41058556|gb|AAR99259.1| glucose-inhibited division protein A [Candidatus Blochmannia sayi]
          Length = 592

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/586 (46%), Positives = 363/586 (61%), Gaps = 7/586 (1%)

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
           T+G MSCNPAIGG+GKGHLV+EIDA+ G+M R  D +GIQFR+LN  KG AVR  R QAD
Sbjct: 1   TLGQMSCNPAIGGIGKGHLVKEIDAMGGMMARAIDKSGIQFRILNSSKGAAVRATRAQAD 60

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFL 158
           + LYR  ++  +  QE+L VIQ  V     E   I  +V+ +     R  +VVLTTGTFL
Sbjct: 61  KMLYRQVIRYNLEHQESLLVIQASVEDLIIENTKIVGVVVPKIGIKFRSLSVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            G IHIG      GR GD+ S+SL +    +     GRLKTGT  R+  K I +D  + Q
Sbjct: 121 NGKIHIGXNNYSGGRAGDTESSSLLSIRLKELSLRVGRLKTGTSPRVHAKGINFDCLQAQ 180

Query: 218 FADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            +D  +  FSF+   K   +QI C IT TN +TH I+  N+  S +YSG +K   PRYCP
Sbjct: 181 ISDNPVPVFSFIGSMKEHPKQIPCYITHTNNQTHDIVKSNLHQSPMYSGLMKGIAPRYCP 240

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           SIEDKI+RF +RN HQIFLEPEGL T  +Y NGIST+LP +IQ Q I++I GLE+  I+R
Sbjct: 241 SIEDKIIRFSDRNSHQIFLEPEGLTTPEIYLNGISTSLPFDIQIQMIKSIRGLERAYIVR 300

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           PGYAIEYD+ +P++L  TLE+K  SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   
Sbjct: 301 PGYAIEYDFFDPRDLKLTLESKLTSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNK 360

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  + G I
Sbjct: 361 EGWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTSIARRFGLI 420

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDF 513
            + R + F +   +    R  L++  +   +   T ++              E L  P+ 
Sbjct: 421 DDPRWEFFCRKKGDIEKERQRLRNTYIFPNSTDITQLNDLLKTPLTHEINGEELLKRPEI 480

Query: 514 SIQNLFSI-CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
           + + L  +         S V ++++I+  Y  Y  RQ  E     + E  L+P D D++ 
Sbjct: 481 NYEKLSRLSVFGLSTLDSQVSDQIEIQIKYEGYIRRQQEEINRYVYNENVLLPTDIDFNI 540

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  LS E+ EKL+  KP ++ QAS+I G+TP A+  LLI++KK  +
Sbjct: 541 ISGLSKEVIEKLNDCKPCSIGQASRISGITPVAIFNLLIWLKKQGL 586


>gi|237724395|ref|ZP_04554876.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. D4]
 gi|229437264|gb|EEO47341.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides dorei 5_1_36/D4]
          Length = 623

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/623 (41%), Positives = 368/623 (59%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 121 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTF 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 481 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|50365486|ref|YP_053911.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mesoplasma florum L1]
 gi|81170555|sp|Q6F0E6|MNMG_MESFL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|50364042|gb|AAT76027.1| glucose inhibited division protein A [Mesoplasma florum L1]
          Length = 626

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/622 (41%), Positives = 373/622 (59%), Gaps = 9/622 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ +DVIVIGGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MNKHFDVIVIGGGHAGVEAALASARLNKKTALINLYKDRIAAMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + AD   +Q ++LN  +GP V   R Q+D+E Y   MQ+ +  Q NL +I+
Sbjct: 61  IDALGGEMAKAADKTALQTKLLNSSRGPGVWALRVQSDKEEYSKYMQKIVEEQINLQLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E N ++ ++++D  +++   VVLTTGT+L+  I  G  K  +G   +  SN 
Sbjct: 121 SIATDLIIENNTVTGVLLKDGEILKSKCVVLTTGTYLKSEILTGHEKFSSGPNEEPTSNG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIE 239
           +  S  K   +  R KTGTP R+   ++   K  K+   +  + FSF T++ T   +Q  
Sbjct: 181 ISESLKKSGVELFRFKTGTPPRIYKNSVDLSKAIKEPGTDAKLAFSFSTNEYTPIEKQEL 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  ++ ET +II +N+  SA+YSG ++S GPRYCPS EDKIVRF  +  HQIF+EPE 
Sbjct: 241 CYLIHSSSETKKIIEDNLTKSAMYSGKVESIGPRYCPSFEDKIVRFSSKETHQIFIEPES 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           ++ D  Y  G ST++P ++Q   IR++PG EK  +    YAIEYD +NP +L P+LE K 
Sbjct: 301 ISGDAWYIQGFSTSMPTDVQLLMIRSLPGFEKAEVKTWAYAIEYDCVNPMQLNPSLEIKN 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+ LF AGQINGT+GYEEAA QGL+AGIN++RK + LD +   R ++YIGVMIDDL +KG
Sbjct: 361 INNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPLILRRDEAYIGVMIDDLINKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAE+R+ LR DNA++RL   G ++G I +     + KY +E N     L+
Sbjct: 421 VWEPYRLLTSRAEHRLLLRNDNAEHRLKEKGYEIGLIKQAEYNEYLKYTEEINNAIKELE 480

Query: 480 SLVLTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
            +  T K  S  +I  K+ G+       +  E L  P   I+ +       +   +  ++
Sbjct: 481 EIRFTPK--SELAIKLKELGQADLSHGYSGIEILKIPTVDIEVMIPYISSLQNLKNNQLQ 538

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            + IE+ +A Y   +    + +   EK+ IP D DY  +  L+ E ++KL  +KP N+ Q
Sbjct: 539 SIVIETRFAGYVKTERKTVERLVKLEKKKIPSDIDYDKVENLATEARQKLKKVKPLNIGQ 598

Query: 595 ASKIEGMTPAALNLLLIYIKKN 616
           AS+I G+ PA + +LL Y+K N
Sbjct: 599 ASRITGVNPADIQMLLFYLKNN 620


>gi|237736116|ref|ZP_04566597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421827|gb|EEO36874.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium mortiferum ATCC 9817]
          Length = 615

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/616 (37%), Positives = 357/616 (57%), Gaps = 4/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGGHAG EAA  +A+LG  TA+ T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MKKIYDVIVVGGGHAGVEAALASARLGKDTAIFTLYLDTIAMMSCNPSIGGPGKSNLVAE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG+  D   +Q + LN  KGPA R  R QAD+ LYR  M++++   +NL +IQ
Sbjct: 61  MDILGGEMGKHTDEFNLQLKHLNESKGPAARITRGQADKYLYRTEMRKKLEHTDNLHMIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   I  +  +         VVL TGTFL+G I IG +   AGR G+  +  
Sbjct: 121 DCVEQIIVDDGEIKGVRTRLGISYFAKAVVLCTGTFLKGKIVIGDVIYSAGRQGEQSAEK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +S         R +T TP RLD ++I + K E+   +E    FS  T+K  N  +   
Sbjct: 181 LSDSLRDHGIHIERYQTATPPRLDRRSIDFSKMEELKGEEHPRYFSIFTNKERNNVVPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T  +  E +K+S I SG I+++GPR+CPS++ K++ F ++  HQIFLE E  +
Sbjct: 241 LTHTTEKTIEVAKEMLKYSPIVSGIIETHGPRHCPSLDRKVLNFPDKTNHQIFLELESAD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG++TA+P   Q   +RTI GLE   I+R GYA+EYDY    +L+P+LE+KKI+
Sbjct: 301 SEEIYVNGLTTAMPPFAQEAMMRTIAGLENAKIMRHGYAVEYDYAPASQLYPSLESKKIA 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QG +AG+N+ARK +  + +   R++ YIGV+IDD+  K   
Sbjct: 361 GLFFAGQINGTSGYEEAACQGFMAGVNAARKLDGKEPVIIDRSEGYIGVLIDDIIHKKTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+  SR+EYR++LR DNA  RL     ++G + + + +     I   N     L+ +
Sbjct: 421 EPYRVLPSRSEYRLTLRFDNAFMRLYEKAKEIGLLSKEKLEYLENAINIVNSEIERLREI 480

Query: 482 VLT---SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +    +  L     S ++  K     E L   + +  +L  +  +   +   +  +++ 
Sbjct: 481 SVPMVKANELLEKLGSNQKFAKGIKIGELLKVKEVTYDSLKDVT-EIGDYPEFIKNQIET 539

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
              Y  +  R+  + ++ K  E+  IPKDFD+S++  +SN  +  L  ++P ++ +AS+I
Sbjct: 540 IIKYDIFIQRENEQIEKFKRLEEMRIPKDFDFSTVKGISNIARSGLEEIRPLSIGEASRI 599

Query: 599 EGMTPAALNLLLIYIK 614
            G+T   + LL+ Y+K
Sbjct: 600 SGVTGNDIALLIGYLK 615


>gi|41058586|gb|AAR99279.1| glucose-inhibited division protein A [Candidatus Blochmannia
           americanus]
          Length = 591

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/585 (45%), Positives = 354/585 (60%), Gaps = 7/585 (1%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNPA+GG+GKGHLV+EIDA+ G+M   AD AGIQFR+LN  KG AVR  R QAD+
Sbjct: 1   LGQMSCNPAVGGIGKGHLVKEIDAMGGVMAYAADKAGIQFRILNSSKGAAVRATRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLR 159
            LYR  ++  +  Q+ L +IQ  V     +KN I  +V+ +       ++VVLTTGTFL 
Sbjct: 61  ILYRQVIRSVLEYQKFLSIIQASVEDLIIDKNKIIGVVVPKIGMKFSSTSVVLTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G IHIG      GR GD  S+SL             RLKTGT  R+    I +     Q+
Sbjct: 121 GKIHIGMKNFSGGRAGDVESSSLLSERLKGLSLRVNRLKTGTSPRVHANGINFGSLIAQY 180

Query: 219 ADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSFM     +  Q+ C IT TN  TH I+  N+  S +Y+G IK   PRYCPS
Sbjct: 181 SDNPIPVFSFMGSTEQHPAQVPCYITHTNDNTHEIVRSNLYQSPMYTGLIKGRSPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDKI RF +R+ HQIFLEPEGL T  +Y NGIST+LP  +Q Q IR+I GLE V+IIRP
Sbjct: 241 IEDKITRFSDRDAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIRSIRGLENVHIIRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ +P++L  TLE+K +SGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   +
Sbjct: 301 GYAIEYDFFDPRDLKLTLESKFVSGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKE 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I 
Sbjct: 361 GWYPRRDQAYLGVLVDDLCTHGAEEPYRMFTSRAEYRLSLREDNADLRLTAIAQQLGLID 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVL---TSKNLSSTSISFKQDGKTRTAYEFLSYPDFS 514
           + R K F    +     R  L+   +   +S  +   +       +     E L  P+  
Sbjct: 421 KTRWKAFCLKRENIEKERQRLRDTYIFPYSSDVVQLNNFLKTPLMREANGEELLRRPEID 480

Query: 515 IQNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
              L  +           + E+++I+  Y  Y   Q  E ++    E  L+P D D+  +
Sbjct: 481 YTKLSQLSTFGPFMLDRQIFEQIEIQIKYEGYIRHQQEEIEKYICNENTLLPTDIDFKVV 540

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             LS E+ +KL+  +P+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 SGLSKEVIDKLNNCRPYSIGQASRISGITPAAISNLLVWLKKQGL 585


>gi|307188483|gb|EFN73226.1| Protein MTO1-like protein, mitochondrial [Camponotus floridanus]
          Length = 663

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/629 (44%), Positives = 403/629 (64%), Gaps = 15/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EA+A A ++GA T L+T K +TIG MSCNP+ GG+GKGHL+RE+D
Sbjct: 33  KKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKNTIGEMSCNPSFGGIGKGHLMREVD 92

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+  R+ D +GI ++VLN  KGPAV G R Q DR LY+  +Q E+ +   L + +  
Sbjct: 93  ALDGVCCRICDISGIHYKVLNKCKGPAVWGLRAQIDRTLYKKHLQAELFNMHGLHIYESS 152

Query: 124 VAGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V       N      ++++D + I    VV+TTGTFL+G I+IG  K PAGR+ D PS  
Sbjct: 153 VEDLILANNPLSCCGVILRDGTKIFGDAVVITTGTFLKGQINIGLEKRPAGRLNDEPSIG 212

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L N+  +  F  GRLKTGTP RL+  +I + K  K   D+  +PFSFM+D +     +QI
Sbjct: 213 LANTLDRLGFQIGRLKTGTPPRLEKDSIDFTKCIKYLPDDSSMPFSFMSDNVWLPPEKQI 272

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
              +T TN    +II +N+  +   + +I   GPRYCPSIE KI+RF +   HQI+LEPE
Sbjct: 273 PTYLTYTNEGVAKIIKDNMHCNLHVTEEI--TGPRYCPSIESKILRF-QTPRHQIWLEPE 329

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++ ++YP+G+S  LPEE Q + +  IPGLE   + +PGY +EYDY++P+EL   LET+
Sbjct: 330 GLDSPLIYPSGLSCTLPEEKQVELVNCIPGLENARLAKPGYGVEYDYVDPRELTSQLETR 389

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KISGLF AGQINGTTGYEEAAAQG+VAG+N+A K  K   +  SRT+ YIGV+IDDLT++
Sbjct: 390 KISGLFFAGQINGTTGYEEAAAQGIVAGVNAAAKVFKKSPLLISRTEGYIGVLIDDLTTE 449

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+  +R  +  + + +      +L
Sbjct: 450 GTTEPYRMFTSRSEFRLSLRPDNADQRLTEKGYAVGCVSRKRLDKTIETLSKIQEAIEIL 509

Query: 479 KS-LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKF---SSLV 532
           K+ + L+ K      +   +  K+++A+E LS  +   + + L +  P+          +
Sbjct: 510 KNEIRLSFKWRELLKLKSAKTNKSKSAFEMLSITEKKITFEQLANCLPNLLGHLARDPTL 569

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFN 591
            ER++IE+ YA     Q  + ++I+  E+ +IP D +Y+S    LS E +EKL+   P  
Sbjct: 570 AERIEIEAKYAHVVADQQDQVEDIRRNEQLIIPDDINYNSSELNLSIEDREKLTKNLPST 629

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           +  A+KI G+TP+A+  LL YIK +  K 
Sbjct: 630 IAAANKISGVTPSAILRLLYYIKYHPNKA 658


>gi|307265443|ref|ZP_07546999.1| glucose inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919557|gb|EFN49775.1| glucose inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 581

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/568 (44%), Positives = 344/568 (60%), Gaps = 4/568 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+V+G GHAG EAA   A+LG  T        +I  M+CNP+IGG  K  LVREIDA
Sbjct: 7   EYDVVVVGLGHAGSEAALACARLGLKTVGFAVNLDSIALMACNPSIGGPAKAQLVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M    D + +Q R LN  KGPAVR  R Q D++LY++ M+  +  QENLD+ Q E+
Sbjct: 67  LGGEMAINTDKSLLQIRTLNTSKGPAVRSLRAQVDKKLYQMNMKYTLERQENLDIKQAEI 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E N ++ +V +  ++ +C   ++TTGTFL+G + IG +   +G  G  P+N L  
Sbjct: 127 VDILVEDNKVTGVVTKLGAIYKCKACIITTGTFLKGRVIIGDVSFNSGPSGLFPANELSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F   R KTGTPAR+D ++I + K E Q  DE + PFS+M DKI   Q+ C +T 
Sbjct: 187 TLKRLGFKLMRFKTGTPARVDKRSIDFSKMEIQPGDEVITPFSYMHDKIEIEQLPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH IIM NI  S ++SG+I   G RYCPSIEDK+V+F  +  HQIF+EPEGLNT  
Sbjct: 247 TNKRTHEIIMANIDRSPLFSGEITGVGVRYCPSIEDKVVKFPHKERHQIFIEPEGLNTYE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+S++LPE++Q +F+RT+PGLE V ++RP YAIEYD I+P +L  TLE+KKI GL+
Sbjct: 307 MYVQGMSSSLPEDVQLEFLRTVPGLENVRVMRPAYAIEYDCIDPTQLKATLESKKIEGLY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+NGT+GYEEAAAQGL+AGIN+A K      +   R+ +YIGV+IDDL +KG  EPY
Sbjct: 367 FAGQVNGTSGYEEAAAQGLMAGINAAMKLLNEPSVILDRSQAYIGVLIDDLVTKGTNEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD RLT +G K+G + E R ++F K   +       L  +++ 
Sbjct: 427 RMLTSRAEYRLLLRQDNADFRLTELGYKIGLVTEERYQKFLKKKIQLEKEMQRLPGVIVK 486

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIES 540
                +  +  K      T    Y  L  P+   ++   +  D        V E++ I  
Sbjct: 487 PSEEVNNFLISKGSTPLVTGIDLYTLLKRPEIDYKSTKFLDKDRPHDILDSVAEQIDINI 546

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            Y  Y  +Q+ + +  K  E +   K  
Sbjct: 547 KYEGYIMKQLRQVEHFKALENKKFQKIL 574


>gi|302823766|ref|XP_002993532.1| hypothetical protein SELMODRAFT_449154 [Selaginella moellendorffii]
 gi|300138663|gb|EFJ05424.1| hypothetical protein SELMODRAFT_449154 [Selaginella moellendorffii]
          Length = 1256

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/602 (42%), Positives = 350/602 (58%), Gaps = 7/602 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIV+GGGHAGCEAA  AA++GA T ++T     I    CNPA+GG  K  LV E+
Sbjct: 47  EHDFDVIVVGGGHAGCEAALAAARMGARTLMLTLNLDRIAWQPCNPAVGGPAKSQLVHEV 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++ D   +Q RVLN  KGPAV   R Q D+  Y   M++ + + ENL + + 
Sbjct: 107 DALGGEIGKITDKCYLQKRVLNRSKGPAVWALRAQTDKREYAREMKKVVETTENLFIRES 166

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V        + +  +            VVLTTGTF+ G I +G+  + AGR G+S S  
Sbjct: 167 MVTEVLVGRNDNVEGVGTFFGVNFFAPAVVLTTGTFMNGKIWVGRKSMSAGRAGESASQG 226

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           L  +   F F+T RLKTGTPAR+D +T+   + E Q  DE +  FSF     +   Q  C
Sbjct: 227 LTENLQSFGFETDRLKTGTPARVDVRTVDTSRLESQPGDEEVRWFSFDPAAHVERDQQCC 286

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRT  ETHR+I EN+  +  Y G ++S GPRYCPSIEDKIVRF +++ HQIFLEPEG 
Sbjct: 287 YITRTTPETHRLINENLLETPTYGGWVESKGPRYCPSIEDKIVRFKDKDSHQIFLEPEGR 346

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYDY+   + +PTL TKK+
Sbjct: 347 SVPELYVQGFSTGLPERLQLALLQTLPGLEHCAMLRPAYAVEYDYLPANQCYPTLMTKKL 406

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ +GQINGTTGYEEAAAQG VAG+N+AR   K D     R  SYIG +IDDL +K +
Sbjct: 407 EGLYFSGQINGTTGYEEAAAQGFVAGVNAARYCCKKDSFVLERESSYIGTLIDDLVTKNL 466

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+   R+E+R+ LR DNAD+RLTP+G  LG I +RR   + +     +  +  L++
Sbjct: 467 REPYRI---RSEHRLLLRADNADSRLTPVGRDLGLIDDRRWSLYQEKQSRISDDKKRLQT 523

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
               S+  N     +S +           L  P    + L          S    E ++I
Sbjct: 524 TRYCSEKMNAEVLQLSGQPVDGPVLLNMLLKRPHVHYELLDKHGAGNPLLSREEKECVEI 583

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y     RQ ++ K++  +  + IP   DY+S+  LS E +EKL+ ++P N+ QAS+I
Sbjct: 584 DIKYEGLIARQTMQLKQMALKLHKEIPDSVDYTSVATLSKEAREKLTQIRPRNIGQASRI 643

Query: 599 EG 600
            G
Sbjct: 644 GG 645


>gi|145218829|ref|YP_001129538.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prosthecochloris vibrioformis DSM 265]
 gi|189039351|sp|A4SC27|MNMG_PROVI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145204993|gb|ABP36036.1| glucose inhibited division protein A [Chlorobium phaeovibrioides
           DSM 265]
          Length = 621

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/620 (43%), Positives = 386/620 (62%), Gaps = 10/620 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV G GHAGCEAA  AA+ G+S  LI+   + +  MSCNPAIGG+ KG + REIDAL
Sbjct: 2   YDIIVAGAGHAGCEAALAAARSGSSCLLISSDLTAVARMSCNPAIGGVAKGQITREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M +  DA GIQFR+LN+ KGPA+  PR QADR  Y   M+R + ++ NLD++Q  V 
Sbjct: 62  GGEMAKAIDATGIQFRMLNLSKGPAMHSPRAQADRTAYTEYMKRVLEAETNLDLLQDTVT 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFN 184
           G          + +Q   ++R    +LT GTFL G+IHIG    P GR + + P   L  
Sbjct: 122 GIEVRGGQFFGVELQSGRILRAGAAILTCGTFLNGLIHIGMNHFPGGRTIAEPPVTGLTE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGIT 243
           S +   F T RLKTGTP R+D ++I +    +Q  DE   PFSF +  I    QI C +T
Sbjct: 182 SLVAAGFTTARLKTGTPPRVDRRSIDYSIVIEQKGDENPPPFSFSSGSIAGKEQISCFLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +T  +TH I+      S ++SG ++  GPRYCPSIEDKI RF ER+ H IFLEPEG +T+
Sbjct: 242 KTTHKTHEILRTGFDRSPLFSGKVQGVGPRYCPSIEDKIHRFTERDSHHIFLEPEGFHTN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG ST+LPE+IQ   +++IPG+E+V +IRPGYAIEYDY +P ++  +LETK +  L
Sbjct: 302 EMYVNGFSTSLPEDIQIAGLQSIPGMEEVKMIRPGYAIEYDYFHPSQIRRSLETKAVENL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGT+GYEEAAAQGL+AGIN++RK  +L  I   R+D+YIGV+IDDL +K   EP
Sbjct: 362 YFAGQINGTSGYEEAAAQGLMAGINASRKLKELPPIHLQRSDAYIGVLIDDLVTKETNEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTS AE+R+ LR DNAD RL   G   G + +   +       E   + + L+S  +
Sbjct: 422 YRMFTSSAEHRLILRHDNADLRLRKFGHTAGLVDDDTYRETLSKDDEIVRMTAFLRSKTI 481

Query: 484 TSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF------SSLVIER 535
            +  L +   + S +     + A   L  P  ++  LF+  PD  K       + LV E+
Sbjct: 482 PTTALYNLLPAESNRPMTGGQKAASALKRPGITLNRLFAALPDFAKEARLISSNPLVHEQ 541

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++I  +Y  Y  R++++ +++   E  ++P+ F+Y S+  LS+E +EKL   +P  L QA
Sbjct: 542 VEINLAYEGYLKRELLQTEKVARLESLILPETFNYHSVTGLSSEGREKLLHFRPETLGQA 601

Query: 596 SKIEGMTPAALNLLLIYIKK 615
           S+I G++P+ +++L++ + +
Sbjct: 602 SRIMGVSPSDISVLMVRLGR 621


>gi|212692562|ref|ZP_03300690.1| hypothetical protein BACDOR_02059 [Bacteroides dorei DSM 17855]
 gi|265752647|ref|ZP_06088216.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_33FAA]
 gi|212664847|gb|EEB25419.1| hypothetical protein BACDOR_02059 [Bacteroides dorei DSM 17855]
 gi|263235833|gb|EEZ21328.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_33FAA]
          Length = 623

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/623 (41%), Positives = 367/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 121 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S        GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITHHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +      +  N +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDADMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTF 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 481 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|160902994|ref|YP_001568575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Petrotoga mobilis SJ95]
 gi|189039348|sp|A9BGL2|MNMG_PETMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|160360638|gb|ABX32252.1| glucose inhibited division protein A [Petrotoga mobilis SJ95]
          Length = 625

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/619 (40%), Positives = 356/619 (57%), Gaps = 7/619 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+G GHAG EAA  +AK+G +T ++     T+G   CNPAIGG  KG + REI
Sbjct: 5   ENSFDVIVVGAGHAGIEAALASAKMGMNTLILNINLDTLGWAPCNPAIGGPAKGVVAREI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+  +V D   I  R+LN  KG AVR  R Q D+  Y   M+  + + +NL +  G
Sbjct: 65  DALGGVQAKVTDETMINIRMLNTSKGIAVRALRAQIDKYDYSQRMKEILETTDNLILRHG 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E   I  +  +         V+LTTGTFLRG I +G+    AGRMG+ P+NSL
Sbjct: 125 IAKNILVENGKIIGLETELGMKYFAKVVILTTGTFLRGKIFVGRNTFEAGRMGELPANSL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECG 241
             S +K   +  R KTGTPAR+   +I + K + Q   +  + FS+ +  ++  +   C 
Sbjct: 185 TYSLIKEGLEVSRFKTGTPARVRKDSIDFSKFDIQETADEPLAFSYWSQPRVLTKDYPCY 244

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           + RTN +TH +I + I  S +Y     I+S GPRYCPSIEDK+++F  ++ HQ FLEPE 
Sbjct: 245 LGRTNSKTHEVIRKYIAFSPLYGDVKLIQSIGPRYCPSIEDKVMKF-NKDTHQFFLEPES 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            ++  +Y NG+ST+LP E Q + ++TIPGLE   I RP YA+EYD++NP +L   LETKK
Sbjct: 304 KHSKEIYLNGLSTSLPFEAQIEILKTIPGLENAIIERPAYAVEYDFVNPIQLKHNLETKK 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I GLFLAGQINGT+GYEEAA QGL+AGIN+A K    +     R+++Y+GV+IDDL +KG
Sbjct: 364 IEGLFLAGQINGTSGYEEAAGQGLLAGINAALKIRGEEPFVLDRSEAYLGVLIDDLITKG 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RL   G K G + + + ++  +     N     L 
Sbjct: 424 VDEPYRLLTSRAEYRLLLRHDNAHLRLYKYGYKYGLLSKEQYEQLHRLENLINHQIERLD 483

Query: 480 SLVLTSKNLSSTSIS--FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            + ++   ++    S    +  +     E L   + S  +L  +  +A +    VIE++ 
Sbjct: 484 QIKVSPNQVNDILASKGSSKITQPVHMSELLKRSEISYTDLKHLDEEAVE-EKEVIEQID 542

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  R   E  ++K  EK  IP D +Y  +  ++ E KEKL  +KP    Q  +
Sbjct: 543 IHFKYNGYFQRMQDEIAKMKELEKEKIPSDIEYDKINNIAYEAKEKLKKIKPETFGQLLR 602

Query: 598 IEGMTPAALNLLLIYIKKN 616
           I G+ PA    L IY+K+ 
Sbjct: 603 IPGINPADAINLRIYLKQK 621


>gi|83319255|ref|YP_424798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|123535456|sp|Q2SR15|MNMG_MYCCT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|83283141|gb|ABC01073.1| glucose inhibited division protein A [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 629

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/621 (40%), Positives = 371/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I  Q+NLD+I 
Sbjct: 61  IDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKKQKNLDLIT 120

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G   + N  ++ I + D  ++    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 KACTGLVYDDNKSVTGIYLDDEIILNAKAVIITTGTYLKSEILKGIDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++   +   +   +  + FSF T+  T   +Q 
Sbjct: 181 GISKSLIDLGIKLMRFKTGTPARVYRDSVDLSRAIIEPGTDMKLAFSFSTNTYTPIEKQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE
Sbjct: 241 PCYLIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVRNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +   +++  Y++E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDTEWEQYLIYVKEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K+        + YE +  P   I  L    P  +K  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKKQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP D +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|68171317|ref|ZP_00544716.1| Glucose-inhibited division protein A subfamily [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88657925|ref|YP_507179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia chaffeensis str. Arkansas]
 gi|123493607|sp|Q2GHA4|MNMG_EHRCR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|67999268|gb|EAM85919.1| Glucose-inhibited division protein A subfamily [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599382|gb|ABD44851.1| glucose inhibited division protein A [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 625

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/597 (47%), Positives = 396/597 (66%), Gaps = 5/597 (0%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITH TSTIG MSCNPAIGG+ KG +VRE+DALDGLMG+V D A I   +LN  KGP
Sbjct: 28  KTLLITHSTSTIGEMSCNPAIGGIAKGTVVREVDALDGLMGKVIDKASINSSILNRSKGP 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT----EKNIISSIVMQDNSMI 145
           AV GPR QADR++Y+  MQ  IL+  NL V++  V  F      EK  + +++  D  +I
Sbjct: 88  AVWGPRAQADRKIYKNTMQDIILNYPNLTVLEASVEDFTITEKDEKFTVETVITSDQQVI 147

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
               ++LTTGTFL+G IHIG    PAGR G+ PS  L  +  K++F  GRL+TGTP RLD
Sbjct: 148 YTKKLILTTGTFLQGTIHIGSYNTPAGRFGEQPSIGLAKTLEKYNFKLGRLRTGTPPRLD 207

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I +   ++Q  D    PFS+M+  I   QI C +T TN  TH +I  N+  +A  + 
Sbjct: 208 INSINFSGLQEQKGDSEPSPFSYMSQSIDLPQISCYLTATNTRTHEVIKNNLHRAAASNS 267

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
                 PRYCPSIE+K+ RF ERN HQ+FLEPEGL+++++YPNGI+T+ P ++Q++ ++T
Sbjct: 268 LKDIKAPRYCPSIEEKVRRFSERNSHQVFLEPEGLDSNIIYPNGITTSSPLDVQYEMLKT 327

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           IPGLEKVNIIR GY++EY++I+P+EL+ TLETKKISGL+ AGQINGTTGYEEAA QG++A
Sbjct: 328 IPGLEKVNIIRSGYSVEYNFIDPRELYHTLETKKISGLYFAGQINGTTGYEEAAGQGIIA 387

Query: 386 GINSARKSN-KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           GIN+A   N K +     R+D+YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD 
Sbjct: 388 GINAALSLNSKYEPFILKRSDAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADL 447

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA 504
           RLT +G ++  +  +R        QE   L ++LK+++ T   L+  +I   QDG  R+ 
Sbjct: 448 RLTELGYQISVVSSKRYTILKNKKQEIITLTNILKNIITTPTQLARHNIPISQDGVRRSI 507

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           ++ L +P+ +++ +  IC   ++F+  V E++ IE+ YA Y  RQ  + K    EE   I
Sbjct: 508 FDLLGHPNINMEIVSRICNTVKEFNKNVAEQVAIEAKYAPYFDRQDADIKAFLEEENTHI 567

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           P + ++S +  LS E++EKL  +KP ++  A +I G+TPAA+  +LIY++    K  
Sbjct: 568 PHNIEFSQIHGLSKEIQEKLEYIKPLSIGSARRIPGITPAAITNILIYLRYYKSKKT 624


>gi|154298844|ref|XP_001549843.1| hypothetical protein BC1G_11669 [Botryotinia fuckeliana B05.10]
 gi|150857574|gb|EDN32766.1| hypothetical protein BC1G_11669 [Botryotinia fuckeliana B05.10]
          Length = 659

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 386/623 (61%), Gaps = 10/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDV+VIGGGHAG EA A +A+ GA TALIT K   IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  TRPYDVVVIGGGHAGAEACAGSARSGARTALITPKLENIGVCSCNPSFGGIGKGTMLREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR+ D AG+QF+VLN KKGPAV GPR Q DR+LY+  M+ E+ +  NL ++ G
Sbjct: 95  DALDGVAGRIIDKAGVQFKVLNRKKGPAVWGPRAQIDRDLYKKHMREELEAYPNLSIVTG 154

Query: 123 EVAGFNTEKN-------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            VA     K         I+ + ++   +I    VV+TTGTFL G IHIG    PAGRMG
Sbjct: 155 SVADIIVSKEEGEAQSGKITGVRLESGEIIPTKQVVITTGTFLGGEIHIGLECYPAGRMG 214

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S     F  GRLKTGTP RL   +I +     Q  D+   PFS++ + ++ 
Sbjct: 215 EAATFGLSKSLKDAGFTLGRLKTGTPPRLAKGSIDFKNLTVQPGDQPPTPFSYLNETVSV 274

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H ++  N+  S      +K  GPRYCPS+E K++RF +++ H ++
Sbjct: 275 QDQLLCHATYTNEASHAVVRANLDKSIHIRETVK--GPRYCPSLESKVIRFSDKDRHIVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG ++DV+YPNGIS  +P E Q Q ++TIPGLE V +  PGY +EYDY++P+ L  T
Sbjct: 333 LEPEGFDSDVIYPNGISMTIPAEAQEQLLKTIPGLENVTMTAPGYGVEYDYVDPRSLKAT 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S  L  +  SR+D YIG+MIDD
Sbjct: 393 LETKAIQGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSLPQLTLSRSDGYIGIMIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +GE+R   F   + +   L
Sbjct: 453 LITKGVSEPYRMFTSRSEYRMSARADNADLRLTEKGRVAGVVGEKRWSVFNDEVAQMGGL 512

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +  L++   ++    +       D   R A + L   D ++ +L +  P+   ++  + +
Sbjct: 513 KLALENSKFSAPVWINDGFKVSNDSTMRNALDILRIRDVTMNDLSTRVPEILTYTQRIRD 572

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R+ IE+ YA Y  +Q    +  + +E   +P D DY S+  +S   K  L I +P ++ Q
Sbjct: 573 RVGIEAVYAPYVIQQKAAQRVFQKDEMLKLPVDLDYDSIHGISMHEKSVLKITRPESVGQ 632

Query: 595 ASKIEGMTPAALNLLLIYIKKNT 617
           A +IEGMTP+    LL + ++  
Sbjct: 633 ARRIEGMTPSGCLRLLAFEERRK 655


>gi|302787481|ref|XP_002975510.1| hypothetical protein SELMODRAFT_415636 [Selaginella moellendorffii]
 gi|300156511|gb|EFJ23139.1| hypothetical protein SELMODRAFT_415636 [Selaginella moellendorffii]
          Length = 1151

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/602 (42%), Positives = 351/602 (58%), Gaps = 7/602 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S+DVIV+GGGHAGCEAA  AA++GA T ++T     I    CNPA+GG  K  LV E+
Sbjct: 47  EHSFDVIVVGGGHAGCEAALAAARMGARTLMLTLNLDRIAWQPCNPAVGGPAKSQLVHEV 106

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +G++ D   +Q RVLN  KGPAV   R Q D+  Y   M++ + + ENL + + 
Sbjct: 107 DALGGEIGKITDKCYLQKRVLNRSKGPAVWALRAQTDKREYAREMKKVVETTENLFIRES 166

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V        + +  +            VVLTTGTF+ G I +G+  + AGR G+S S  
Sbjct: 167 MVTEVLVGRNDNVEGVGTFFGVSFFAPAVVLTTGTFMNGKIWVGRKSMSAGRAGESASQG 226

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L  +   F F+T RLKTGTPAR+D +T+   + E Q  D+ +  FSF       R Q  C
Sbjct: 227 LTENLQSFGFETDRLKTGTPARVDVRTVDTSRLESQPGDDEVRWFSFDPAAHVERAQQCC 286

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            ITRT  ETHR+I EN+  +  Y G ++S GPRYCPSIEDKIVRF +++ HQIFLEPEG 
Sbjct: 287 YITRTTPETHRLINENLLETPTYGGWVESKGPRYCPSIEDKIVRFKDKDSHQIFLEPEGR 346

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +Y  G ST LPE +Q   ++T+PGLE   ++RP YA+EYDY+   + +PTL TKK+
Sbjct: 347 SVPELYVQGFSTGLPERLQLALLQTLPGLEHCAMLRPAYAVEYDYLPANQCYPTLMTKKL 406

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+ +GQINGTTGYEEAAAQG VAG+N+AR   K D     R  SYIG +IDDL +K +
Sbjct: 407 EGLYFSGQINGTTGYEEAAAQGFVAGVNAARYCCKKDSFVLERESSYIGTLIDDLVTKNL 466

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+   R+E+R+ LR DNAD+RLTP+G  LG I +RR   + +     +  +  L++
Sbjct: 467 REPYRI---RSEHRLLLRADNADSRLTPVGRDLGLIDDRRWSLYQEKQSRISDDKKRLQT 523

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
               S+  N     +S +           L  P    + L          S    E ++I
Sbjct: 524 TRYCSEKMNAEVLQLSGQPVDGPVLLNMLLKRPHVHYELLDKHGAGNPLLSREEKECVEI 583

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y     RQ I+ K++  +  + IP   DY+S+  LS E +EKL+ ++P N+ QAS+I
Sbjct: 584 DIKYEGLIARQTIQLKQMALKLHKEIPDSVDYTSVATLSKEAREKLTQIRPRNIGQASRI 643

Query: 599 EG 600
            G
Sbjct: 644 GG 645


>gi|237709122|ref|ZP_04539603.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 9_1_42FAA]
 gi|229456818|gb|EEO62539.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 9_1_42FAA]
          Length = 623

 Score =  685 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/623 (41%), Positives = 367/623 (58%), Gaps = 9/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRMLNRSKGPAMWSPRAQCDRGKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + ++           +VLT GTFL G++HIG  ++  GRM +  S  
Sbjct: 121 DTVEELIVENGEATGVMTCWGVTFHAKCIVLTAGTFLNGLMHIGHKQLAGGRMAEPASYH 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  S  +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM++    +Q++C 
Sbjct: 181 LTESITRHGITAGRMKTGTPVRIDGRSVHYELMETQDGENDFHRFSFMSEPRKLKQLQCW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              TN E H ++ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG  
Sbjct: 241 TCFTNEEVHEVLRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGET 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  +Y NG S++LP +IQ   ++ +P  + + + RPGYAIEYDY +P +L  TLE+K I 
Sbjct: 301 TQELYLNGFSSSLPMDIQLAALKKVPAFKDLVVYRPGYAIEYDYFDPTQLKHTLESKIIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LFLAGQ+NGTTGYEEA  QG++AGIN+    +  +     R ++YIGV+IDDL +KGV 
Sbjct: 361 NLFLAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLGRDEAYIGVLIDDLVTKGVD 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAEYRI LR D+ D RLT    KLG + + R +      +  N +    K+ 
Sbjct: 421 EPYRMFTSRAEYRILLRQDDVDMRLTERAYKLGLVKQDRYEHLCSKREAVNQIIDFAKTF 480

Query: 482 VLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------SSLV 532
            + +  ++    S+   +        + L+ P  +I+N+    P  +            V
Sbjct: 481 SIKAALINDALESLGTARLTHGCKLIDLLNRPQITIENIAGHIPAFKAMLDQITDRKEEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           IE  ++   Y  Y  R+ + A++I   E   I   FDY+SL +LS E ++KL  + P  L
Sbjct: 541 IEAAEVLIKYQGYIDRERMIAEKIHRLEAIRIKGKFDYNSLNSLSTEARQKLMKIDPETL 600

Query: 593 LQASKIEGMTPAALNLLLIYIKK 615
            QAS+I G++P+ +N+LL+ + +
Sbjct: 601 AQASRIPGISPSDINVLLVLLGR 623


>gi|302690612|ref|XP_003034985.1| hypothetical protein SCHCODRAFT_65522 [Schizophyllum commune H4-8]
 gi|300108681|gb|EFJ00083.1| hypothetical protein SCHCODRAFT_65522 [Schizophyllum commune H4-8]
          Length = 666

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/595 (45%), Positives = 377/595 (63%), Gaps = 12/595 (2%)

Query: 32  ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            L+T   +TIG MSCNP+IGG+GKG LVRE+DAL GLMGRVAD AGIQFR+LN  KG A+
Sbjct: 51  ILLTQNPATIGEMSCNPSIGGVGKGTLVREVDALGGLMGRVADKAGIQFRILNRSKGMAL 110

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE--------KNIISSIVMQDNS 143
             PR Q DR LYR  MQ  + +  NLDV  G V     +         + I  + +    
Sbjct: 111 WSPRAQMDRVLYRTNMQGTLNNYPNLDVRAGSVFDLVFDVPPSLNGSPSKIVGVKLDSGD 170

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           +I CS VV+ TGTFL G IHIG  + PAGRMG++PS  L  S     F  GRL+TGTPAR
Sbjct: 171 IIPCSQVVICTGTFLGGEIHIGLKRFPAGRMGEAPSIGLSASLAAAGFKLGRLQTGTPAR 230

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSA 261
           L   +I + +  +Q  D+   PFSF+   + N   +I C +TRT  ETH+II +N+  S 
Sbjct: 231 LAKDSIDFSQMPEQLGDDPPSPFSFLHKAVDNADNRISCFMTRTTSETHQIIRDNLHRSV 290

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
                 K  GPRYCPS+E KI+RF  +  H ++LEPEG ++D++YPNGIS ++PE++Q  
Sbjct: 291 HIQETRK--GPRYCPSLEAKILRFASKTSHNVWLEPEGYDSDLIYPNGISNSMPEDVQEA 348

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
           F+RTIPGLE   I+RP Y +EYD+I+P+EL  +LETK+I GLFLAGQINGTTGYEEAAAQ
Sbjct: 349 FVRTIPGLENAKIVRPAYGVEYDFIDPRELGASLETKRIGGLFLAGQINGTTGYEEAAAQ 408

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G+VAGIN+   +     +  SR D +IGVMIDDL  KG  EPYRMFTSR+EYR+++R DN
Sbjct: 409 GIVAGINAGLAALGKPPMIISRADGFIGVMIDDLIVKGAEEPYRMFTSRSEYRMTIRSDN 468

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT 501
           AD RLTP+G K+G + + R   + +   +   +  +LK   L+ +   S  +S ++DG  
Sbjct: 469 ADMRLTPLGRKVGVVDDARWAAYERACGDVEEVTRVLKETRLSPQAWVSHGMSVQRDGVY 528

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           R+ ++ L YP+ S  +L    P    +    + R+ I+  Y+ Y  RQ  + K+   +E 
Sbjct: 529 RSGWDLLGYPNVSTADLVGAIPQLANYDPQTLARVDIDGRYSHYISRQEEDLKDFLQDES 588

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             +    DY ++  LS+E+KEKL+ ++P  +  A ++EG+TP ++ LL+ + ++ 
Sbjct: 589 FTLDPQMDYDAVDGLSSEVKEKLAKVRPATIGAARRMEGITPISIVLLMRHARQK 643


>gi|296417422|ref|XP_002838357.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634285|emb|CAZ82548.1| unnamed protein product [Tuber melanosporum]
          Length = 686

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/616 (45%), Positives = 387/616 (62%), Gaps = 18/616 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ +DV+VIGGGHAG EA A AA++GA TAL+T K  TIG+ SCNP+ GG+GKG ++RE
Sbjct: 38  LNQEFDVVVIGGGHAGSEACAAAARVGAKTALVTQKIDTIGTCSCNPSFGGIGKGIMIRE 97

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDG+ GR+ D AGIQFRVLN  KGPAV GPR Q DR+LY+  MQ E++S  NL ++Q
Sbjct: 98  VDALDGVCGRITDKAGIQFRVLNRSKGPAVWGPRAQIDRKLYKKYMQEELMSYPNLSILQ 157

Query: 122 GEVAGFNTEKN-------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           G VA    ++               I+ + ++   +I+   VV+TTGTFL G IHIG   
Sbjct: 158 GSVADVVVDRVPEGQMIGMEGHYGKITGVRLESGEVIKARNVVITTGTFLGGEIHIGLTV 217

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+GRMG++ +  L  S  +  F  GRLKTGTP R+DG+TI +     Q  D+  IPFS+
Sbjct: 218 FPSGRMGEAATFGLSKSLREAGFKLGRLKTGTPPRIDGRTIDYKSLLPQLGDDPPIPFSY 277

Query: 229 MTDKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           M +K+   +Q++C  T T  E+H ++ ++   S      IK  GPRYCPS+E KI+RF +
Sbjct: 278 MNEKVQIEQQLQCHSTHTTPESHNLLRQHFHESIHIRETIK--GPRYCPSLESKIIRFEK 335

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R  H I+LEPEG++  VVYPNGIS  +P E+Q + ++TIPGLE+  +++PGY +EYDYI+
Sbjct: 336 RQNHMIWLEPEGIDDHVVYPNGISMTVPAEVQERLLKTIPGLEEAKMLQPGYGVEYDYID 395

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L  TLETK + GLFLAGQINGTTGYEEAAAQG+VAGIN+   S     +  SR+D+Y
Sbjct: 396 PRSLRATLETKIVKGLFLAGQINGTTGYEEAAAQGVVAGINAGLSSQGKPQMTISRSDAY 455

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG+MIDDL +KGV EPYRMFTSR+E+R+S R DNAD RLT  G   G +G+ R   F   
Sbjct: 456 IGIMIDDLITKGVSEPYRMFTSRSEFRMSSRADNADLRLTQAGRDHGVVGDARWAHFQTE 515

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDA 525
                  RS L ++  +S       +  ++D   R A+  L   + +I  L    +    
Sbjct: 516 FSLMEDFRSALSNITQSSSEWRKRGLVVREDSARRNAFHLLRLSNMTIGKLAEMGVVGGL 575

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            ++   +  R+ IE  Y  Y  RQ    K  + +E   +P D DY  +  LS E +  L 
Sbjct: 576 DRWPERIRTRVGIEGVYEPYVTRQANAVKMFEKDEGLKLPADIDYDRVLGLSYEERVVLK 635

Query: 586 ILKPFNLLQASKIEGM 601
            ++P ++ QA ++EG+
Sbjct: 636 RVRPESIGQARRVEGV 651


>gi|42561530|ref|NP_975981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42561553|ref|NP_976004.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81170560|sp|Q6MRU5|MNMG_MYCMS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|42493029|emb|CAE77623.1| Glucose inhibited division protein A [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42493052|emb|CAE77646.1| Glucose inhibited division protein A [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
          Length = 629

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/621 (40%), Positives = 368/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I 
Sbjct: 61  IDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLIT 120

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G    E   ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 RACTGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++       +   +  + FSF T   T   +Q 
Sbjct: 181 GISQSLIDLGIKLMRFKTGTPARVYRDSVDLSNAVLEPGTDMKLAFSFSTSTYTPIEKQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG +KS GPRYCPS EDK VRF E++ HQIF+EPE
Sbjct: 241 PCYLIHSTLETKKIIEDNLEKSAMYSGTVKSIGPRYCPSFEDKAVRFREKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQEMMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVKNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y++E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDQEWNQYLIYVKEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K         + YE +  P   I  L    P  +K  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP D +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|256384192|gb|ACU78762.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385024|gb|ACU79593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455448|gb|ADH21683.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 629

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/621 (40%), Positives = 370/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I 
Sbjct: 61  IDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLIT 120

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G   + N  ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 RACTGLVYDDNKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++       +   +  + FSF T+  T   +Q 
Sbjct: 181 GISKSLIDLGIKLMRFKTGTPARVYRDSVDLTNAVLEPGTDMKLAFSFSTNTYTPIEKQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE
Sbjct: 241 PCYLIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVRNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLVNK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y+ E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDQEWNQYLIYVNEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K         + YE +  P   I  L    P  +K  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP D +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|73667267|ref|YP_303283.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ehrlichia canis str. Jake]
 gi|123614801|sp|Q3YRH0|MNMG_EHRCJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|72394408|gb|AAZ68685.1| Glucose-inhibited division protein A subfamily [Ehrlichia canis
           str. Jake]
          Length = 625

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/621 (48%), Positives = 424/621 (68%), Gaps = 5/621 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIGGGHAGCEAAA A+++GA T LITH  STIG MSCNPAIGG+ KG +VRE+DA
Sbjct: 3   HYDVVVIGGGHAGCEAAAAASRIGAKTLLITHSISTIGEMSCNPAIGGIAKGTVVREVDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG+V D A I   +LN  KGPAV GPR QADR +Y+  MQ  IL+  NL V++  V
Sbjct: 63  LDGLMGKVIDKASIHSSILNRSKGPAVWGPRAQADRLIYKQTMQEIILNYPNLTVLEASV 122

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             F      +K+ + +++  +   I  S ++LTTGTFL+G IHIG    PAGR+G+ PS 
Sbjct: 123 EDFTITQDNQKDSVKAVITSEQHTIYTSKLILTTGTFLQGTIHIGSYTTPAGRIGEQPSI 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  K++F  GRL+TGTP RLD  +I +   ++Q  D    PFS+++  I   QI C
Sbjct: 183 GLAKTLEKYNFKLGRLRTGTPPRLDINSINFAVLQEQKGDIHPSPFSYISQSIDLPQISC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH +I  N+  +A  +       PRYCPSIE+K+ RF +RN HQ+FLEPEGL
Sbjct: 243 YLTATNNKTHEVIKNNLHRAAASNLLKDIKAPRYCPSIEEKVRRFSDRNSHQVFLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           N+D++YPNGI+T+ P ++Q++ ++TIPGLEKVNI+R GY++EY++I+P+EL+ TLETKKI
Sbjct: 303 NSDIIYPNGITTSSPLDVQYEMLKTIPGLEKVNIVRSGYSVEYNFIDPRELYHTLETKKI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKG 419
           SGL+ AGQINGTTGYEEAA QG++AGIN+A   S+  +     R+D+YIGVMIDDL + G
Sbjct: 363 SGLYFAGQINGTTGYEEAAGQGIIAGINAALSLSSNYEPFILKRSDAYIGVMIDDLVTLG 422

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+FTSRAEYR+ LR DNAD RLT +G K+  +  +R         +   L ++LK
Sbjct: 423 TSEPYRLFTSRAEYRLRLRSDNADLRLTELGYKVSAVSSKRYCALKNKQHDIESLTNILK 482

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           ++++T   L++  I   QDG  R+ ++ LS+P+ +I+ +  IC   +KFS  V+ +++IE
Sbjct: 483 NIIITPTQLAAYDIPVSQDGVKRSIFDLLSHPNINIETVSKICDVIKKFSKAVVSQVEIE 542

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             YA Y  RQ  + ++   EE   IP + ++S +  LS E++EKL+ +KP ++  A +I 
Sbjct: 543 GKYAPYFIRQDADIQDFIEEENTHIPSNIEFSQIHGLSKEIQEKLAHIKPPSIGSARRIP 602

Query: 600 GMTPAALNLLLIYIKKNTVKL 620
           G+TPAA+  +LIY++ +  K 
Sbjct: 603 GVTPAAITSILIYLRYHKNKK 623


>gi|301320718|gb|ADK69361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 629

 Score =  683 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/621 (40%), Positives = 368/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I 
Sbjct: 61  IDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLIT 120

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G    E   ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 RACTGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++       +   +  + FSF T   T   +Q 
Sbjct: 181 GISQSLIDLGIKLMRFKTGTPARVYRDSVDLSNAVLEPGTDMKLAFSFSTSTYTPIEKQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK VRF E++ HQIF+EPE
Sbjct: 241 PCYLIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKAVRFREKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQEMMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVKNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I ++   ++  Y++E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGKEIGLISDQEWNQYLIYVKEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K         + YE +  P   I  L    P  +K  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP D +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|170739705|ref|YP_001768360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium sp. 4-46]
 gi|205831535|sp|B0UJI8|MNMG_METS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|168193979|gb|ACA15926.1| glucose inhibited division protein A [Methylobacterium sp. 4-46]
          Length = 627

 Score =  683 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/598 (56%), Positives = 435/598 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAAA AA+LGA+TAL+TH+ +T+G+MSCNPAIGGLGKGHLVRE+DAL
Sbjct: 9   FDVIVVGGGHAGVEAAAAAARLGAATALVTHRRATLGAMSCNPAIGGLGKGHLVREVDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGLMGRVAD AGIQFR+LN +KGPAVRGPR+QADR+LY  AMQ  + +  NL +I+GE  
Sbjct: 69  DGLMGRVADRAGIQFRLLNRRKGPAVRGPRSQADRKLYARAMQEALAATPNLSLIEGEAH 128

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                +  ++ IV+ D   + C+ VVLTTGTFLRG+IHIG+  +PAGR+G++P+  L  +
Sbjct: 129 DLAVVEGRVTGIVLADGRALPCAAVVLTTGTFLRGLIHIGERTMPAGRVGEAPALGLAAT 188

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F  GRLKTGTPARLDG+TI W   EKQ AD+  +PFS +TD+IT  QIECG+TRT
Sbjct: 189 LDRHGFGLGRLKTGTPARLDGRTIDWAGIEKQAADDEPVPFSSLTDRITTPQIECGVTRT 248

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R+GHQIFLEPEGL+   +
Sbjct: 249 TQAVHDLIRANLHRSPMYSGGITSRGPRYCPSIEDKVVRFGDRDGHQIFLEPEGLDDPTI 308

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGISTALPEE+Q   +R IPG E+  ++RPGYAIEYDY++P+EL PTL+T++++GLFL
Sbjct: 309 YPNGISTALPEEVQRAVLRLIPGCERAAMLRPGYAIEYDYVDPRELDPTLQTRRVAGLFL 368

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAA QG++AGIN+AR +         R +SYIGVMIDDL + GV EPYR
Sbjct: 369 AGQINGTTGYEEAAGQGILAGINAARLAAGSALAVLDRAESYIGVMIDDLVTHGVSEPYR 428

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+EYR+SLR DNAD RLT  G+ LGC+G  R + FA+  Q     R+ L +L +T 
Sbjct: 429 MFTSRSEYRLSLRVDNADERLTGRGIALGCVGAARARHFAESQQALAAARARLDALAITP 488

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
              +   ++  +DG  R+A++ LSYP+     L +I P+       V ERL+ +++YA Y
Sbjct: 489 SEAARHGLALNRDGIRRSAFQLLSYPEIDWPRLAAIWPELAAVPPRVAERLRTDAAYAVY 548

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
             RQ  +    + +E   +P   DY  +  LSNEL+ KL  ++P  L QA++IEG+TP
Sbjct: 549 LDRQRSDIAAFRRDEAVRLPASLDYGRIAGLSNELRLKLDCVRPHTLGQAARIEGVTP 606


>gi|148657274|ref|YP_001277479.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Roseiflexus sp. RS-1]
 gi|205375712|sp|A5UY26|MNMG_ROSS1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148569384|gb|ABQ91529.1| glucose-inhibited division protein A [Roseiflexus sp. RS-1]
          Length = 679

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/661 (39%), Positives = 368/661 (55%), Gaps = 44/661 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  AA++G  T L+T     +  MSCNP+IGG  KGHLVREIDAL
Sbjct: 9   YDVIVVGAGHAGCEAAHAAARMGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGRV D   IQ R+LN  KGPAV+ PR QAD+ LY   M+  + +  NLD+ Q  + 
Sbjct: 69  GGLMGRVTDRTFIQIRLLNESKGPAVQAPRAQADKRLYAKVMKETLETIPNLDLRQAMIE 128

Query: 126 GFNTEKNIIS----------------SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                + I                  ++V     + +C  +VLTTGTFLRG    G    
Sbjct: 129 RIILPRPINRNGSDTDDAEALCPGHYAVVTHTRRIYQCRALVLTTGTFLRGRAITGDAIW 188

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            AGR G++P+ +L        F   RLKTGTP R+D +TI +  T  Q      + F F 
Sbjct: 189 GAGRAGEAPATALGEDLAALGFPLVRLKTGTPPRIDARTIDFSLTSVQHGSATPLFFGFY 248

Query: 230 TDKI------------------------TNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
              +                           Q+ C +  T  E H I+  N+  + ++SG
Sbjct: 249 YRALNEAPPEPAFGGPPASAYPEPLLDAWRPQLPCYLVHTTPEFHEIVRRNLDRAPLFSG 308

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKIVRF ++  H +FLEPEG +T  VY  G +T+LPE++Q   +R+
Sbjct: 309 IIEGVGPRYCPSIEDKIVRFADKERHGLFLEPEGWSTHEVYVQGCNTSLPEDVQWAMLRS 368

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           IP L +V ++R GYAIEYD +   E+   + +++  GLF AGQINGTTGYEEAAAQGL+A
Sbjct: 369 IPALRRVELMRAGYAIEYDALATGEIAADMSSRRAPGLFFAGQINGTTGYEEAAAQGLMA 428

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+AR       +   R ++YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD R
Sbjct: 429 GINAARFVQGKPSVLLRRDEAYIGVLIDDLVTKEIREPYRMFTSRAEHRLLLRADNADLR 488

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS---FKQDGKTR 502
           LTP+  +LG +   R     +  +E   L ++L+   L      +  +S           
Sbjct: 489 LTPLAGELGLVDRERVAVVERKREEVERLLAVLRGKRLYPSAAINARLSAAGIAPLTGEM 548

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
           +A E L  P+   + L     D     + V E++ IE+ Y+ Y  +Q  E + ++  E R
Sbjct: 549 SAEEVLRRPEVRYRQLQPAL-DLPACEADVAEQVDIEAKYSGYLLKQQREVERLRRMESR 607

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
            IP DFD+++L  L NE ++ L   +P  + QA+++ G+ PA + LLL+ +++ T +   
Sbjct: 608 RIPPDFDFAALRGLRNEARQTLQRFRPATIGQAARLAGINPADIALLLVALERQTRQATP 667

Query: 623 I 623
           +
Sbjct: 668 V 668


>gi|312221220|emb|CBY01161.1| similar to tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme gidA [Leptosphaeria maculans]
          Length = 693

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/622 (46%), Positives = 392/622 (63%), Gaps = 13/622 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDV+VIGGGHAGCEA+A +A+ GA TALIT     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPYDVVVIGGGHAGCEASAASARTGARTALITPSLDNLGVCSCNPSFGGIGKGTMLREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ EIL  + L V+ G 
Sbjct: 100 ALDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRSLYKKYMKEEILGYQGLSVVPGS 159

Query: 124 VAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA    +++           I+ + ++   ++    VV+TTGTFL G IHIG    P+GR
Sbjct: 160 VADIIVDRSDEARREGRYGRITGVRLESGELVMTENVVITTGTFLGGEIHIGLEAFPSGR 219

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S     F  GRLKTGTP RLDGKTI +   + Q  D+  +PFS++ D++
Sbjct: 220 MGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDGKTIDYKVLDAQEGDDPPMPFSYLNDRV 279

Query: 234 T-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+    TRTN  +H II +N+  S      +K  GPRYCPS+E K++RF ++  H 
Sbjct: 280 QVENQLLNYETRTNEASHDIIRKNLDKSIHIRETVK--GPRYCPSLESKVIRFADKTSHI 337

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEG +TDV+YPNGIS  +P ++Q   ++TI GLE V +++PGY +EYDY++P+ L 
Sbjct: 338 VWLEPEGFDTDVIYPNGISCTVPADVQLAMLKTIKGLENVKVLQPGYGVEYDYVDPRHLR 397

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK ISGLFLAGQINGTTGYEEAA QG+VAGIN+  KS   D +  SR D YIG+MI
Sbjct: 398 STLETKNISGLFLAGQINGTTGYEEAAGQGIVAGINAGLKSLHKDPLVLSRADGYIGIMI 457

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+EYR+S R DNAD RLTP+G   G I   R   +    Q+  
Sbjct: 458 DDLITKGVSEPYRMFTSRSEYRMSSRADNADTRLTPLGHAAGVITNTRWSAYTSERQQIE 517

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
            L  LL+S  L+    +    + + D   R+AYE L  PD S  +L  + P  + F   +
Sbjct: 518 ALTQLLQSKTLSWTAWNEAGHAVRNDSTKRSAYEILRLPDTSPTDLIPLLPQIKDFPERI 577

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             R+ I ++YA Y   Q         +E   +P D +Y ++  LS E K  L + +P ++
Sbjct: 578 RNRVHINATYAPYVAYQAAAQARWLRDEHLRLPADIEYENIFGLSFEEKRALEVARPESV 637

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
             A ++EG+TP     LL +++
Sbjct: 638 GMARRVEGVTPTGALRLLQFVR 659


>gi|269122708|ref|YP_003310885.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
 gi|268616586|gb|ACZ10954.1| glucose inhibited division protein A [Sebaldella termitidis ATCC
           33386]
          Length = 619

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/616 (38%), Positives = 350/616 (56%), Gaps = 4/616 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAG EAA  +A+LG  TAL T     I  MSCNP+IGG GK HLV E
Sbjct: 1   MNTDYDVIVVGAGHAGVEAALASARLGMKTALFTIFIDNIAMMSCNPSIGGPGKSHLVSE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  L G M R  D+  +Q + LN  KG A R  R QAD+  YR+ M+  I  QENL+V+Q
Sbjct: 61  LGMLGGEMARHIDSYNLQLKNLNHTKGLAARITRAQADKYWYRIKMREIIEKQENLEVVQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V+    +   ++ +  Q         V+L TGTFL+G   IG +K  AGR G+  S  
Sbjct: 121 GIVSDLILDGKKVTGVKDQVGIEYGAKAVILCTGTFLKGRFIIGDVKYEAGRQGEQSSEE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   ++ F+  R +T TP R+D +TI + + E+   +E    FS+ T K  N  +   
Sbjct: 181 LSDRLREYGFEVDRYQTATPPRIDKRTINFSEIEELKGEENPRYFSYYTLKEENSVMPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  ET R+  E +K+S I +G + S GPR+CPS++ K++RF E+  HQIFLE E   
Sbjct: 241 LTYTTPETIRVASELLKYSPIVTGIVSSKGPRHCPSLDRKVLRFPEKTDHQIFLEQESTE 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EYDYI   +L  TLETK + 
Sbjct: 301 SNEIYINGFTTAMPPFAQDAMLKTIKGLENAKIMRYGYAVEYDYIPANQLKLTLETKVLE 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L+ AG INGT+GYEEAA QG +A +N+ RK      +   R++ Y GV+IDD+ +K   
Sbjct: 361 NLYTAGTINGTSGYEEAAVQGFMASVNAVRKIKGQSPVIIDRSEGYTGVLIDDIINKDTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+  SRAEYR++LR DN   RL     ++G + + + +      +E       L+++
Sbjct: 421 EPYRVLPSRAEYRLTLRQDNVFLRLLDKAREIGILDKEKLEELENAKKEIEKELERLRNI 480

Query: 482 VLTS-KNLSSTSISFKQDG--KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
            +   K  +   IS   D      +A+EFL+  + +   L     +  K S +V E+++I
Sbjct: 481 TVYPTKENNEILISLGHDTMNNPVSAFEFLARKEMTYDGLARFI-ETEKLSKIVKEQVEI 539

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
            S Y  +  R+  + ++ K  E+ +IPKD DY  +  +SN     L   +P  + QAS+I
Sbjct: 540 NSKYKIFIDREKNQIEKFKKLEEMIIPKDTDYEKIKGISNIAISGLVYSQPETIGQASRI 599

Query: 599 EGMTPAALNLLLIYIK 614
            G+T   + LL+ +IK
Sbjct: 600 SGITHNDMTLLIAFIK 615


>gi|326798714|ref|YP_004316533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sphingobacterium sp. 21]
 gi|326549478|gb|ADZ77863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Sphingobacterium sp. 21]
          Length = 620

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/619 (43%), Positives = 383/619 (61%), Gaps = 7/619 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++   VIV+G GHAGCEAAA AA LG+   LIT    TI  MSCNPA+GG+ KG +VR
Sbjct: 1   MFSKYN-VIVVGAGHAGCEAAAAAANLGSKVLLITMNMGTIAQMSCNPAMGGVAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G +AD   IQFR+LN+ KGPA+  PR+Q DR  +    + ++ S  N+D  
Sbjct: 60  EIDALGGYSGIIADKTTIQFRMLNLSKGPAMWSPRSQNDRMRFAEEWRLQLESLSNIDFW 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     ++     ++      I    VVLT GTFL G+IHIG+ K   GR G+  + 
Sbjct: 120 QDTVKEIIVDQGRAKGVITSLGIRIEADAVVLTNGTFLNGIIHIGEKKFGGGRTGEKAAT 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L    +   F++GR+KTGTP R+DG+T+ + K E+Q+ DE+   FS+ +  + + Q  C
Sbjct: 180 GLTEQLISIGFESGRMKTGTPPRVDGRTLDYTKMEEQWGDEKRGRFSYQSIDLPHEQRCC 239

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN   H  + E  + S +++G IK  GPRYCPSIEDKI RF ER+ HQIF+EPEG 
Sbjct: 240 WITYTNTNVHDTLKEGFEKSPMFTGRIKGLGPRYCPSIEDKINRFAERDRHQIFVEPEGW 299

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG ST+LPE++Q + +R IPG E   + RPGYAIEYDY  P +L  TLETKK+
Sbjct: 300 RTHEIYVNGFSTSLPEDVQFKALRQIPGFENAKMFRPGYAIEYDYFPPMQLDLTLETKKV 359

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAA+QGL+AGIN+ ++ N L  +   R++SYIGV+IDDL +KG 
Sbjct: 360 KNLFFAGQINGTTGYEEAASQGLIAGINAHQRINDLHELILKRSESYIGVLIDDLVTKGT 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAE+R+ LR DNAD RLTP+  +LG   E    +    I + + +   L+ 
Sbjct: 420 EEPYRMFTSRAEHRLLLRQDNADIRLTPLAHQLGLASEEALDKVKTKISKSDEIVEYLRK 479

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK----FSSLVIE 534
             + +  ++     +S     +    +  L+ P  +I NL       ++    FS  +IE
Sbjct: 480 TSVEASKMNPILEKLSSSPLTQNIKMFNVLTRPQLNIWNLAEANSSLKELLADFSEEIIE 539

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           + +I+  Y +Y  +++    ++K  E + I   FDY+ L +LS E +EKL  +KP  L Q
Sbjct: 540 QAEIKVKYDSYFDKEIEIVNKMKKMEDKEINPHFDYNQLISLSKEAREKLIKIKPRTLGQ 599

Query: 595 ASKIEGMTPAALNLLLIYI 613
           AS+I G++PA +++L++++
Sbjct: 600 ASRISGVSPADVSVLMVHM 618


>gi|41058568|gb|AAR99267.1| glucose-inhibited division protein A [Candidatus Blochmannia
           vicinus]
          Length = 593

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/592 (46%), Positives = 370/592 (62%), Gaps = 17/592 (2%)

Query: 39  STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            T+G MSCNPAIGG+GKGHLV+EID++ G M    D AGIQFR+LN  KG AVRG R QA
Sbjct: 1   DTLGQMSCNPAIGGIGKGHLVKEIDSMGGAMACAIDNAGIQFRILNRSKGAAVRGTRAQA 60

Query: 99  DRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTGTF 157
           D+ LYR  ++  +  QE+L +IQ  V      KN I  + + +    I  ++VVLTTGTF
Sbjct: 61  DKILYRQIIRNTLEYQESLLIIQASVEDLIINKNKIVGVFIPKIGMKISATSVVLTTGTF 120

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNS-LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           L G IHIG      GR GD  S+S L     +F    GRLKTGT  R+  K I +D  E 
Sbjct: 121 LNGKIHIGMNNFRGGRAGDVESSSVLSKRLKEFSLRVGRLKTGTSPRVHSKGINFDALEA 180

Query: 217 QFADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           Q++D  +  FSF+ ++K   +Q+ C IT TN +TH II  N+  S I++G I+   PRYC
Sbjct: 181 QYSDSPVPIFSFIGSEKQHPKQVPCYITYTNDKTHEIIRSNLNQSPIHAGLIEGISPRYC 240

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKI RF +RN HQIFLEPEGL T  +Y NGIST+LP  +Q Q I++I GLE  +II
Sbjct: 241 PSIEDKITRFSDRNAHQIFLEPEGLTTPEIYLNGISTSLPFYVQIQMIKSIQGLENAHII 300

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RPGYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S  
Sbjct: 301 RPGYAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQN 360

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG 
Sbjct: 361 KEGWYPRRDQAYLGVLVDDLCTYGTKEPYRMFTSRAEYRLSLREDNADLRLTAIARQLGL 420

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTS--------KNLSSTSISFKQDGKTRTAYEF 507
           + E R K F    +     R  L+++ +           N   T ++++ +G+       
Sbjct: 421 VDELRWKNFCLKKESIEKERQRLRNVYIFPYSTDAKQLNNFLKTPLTYEVNGEE-----L 475

Query: 508 LSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
           L  P+ +   L  +   +       V E+++I+  Y  Y   Q  E +     E  L+P 
Sbjct: 476 LRRPEVNYVTLSKLRVFSSFVSDRQVFEQIEIQIKYEGYIRHQQKEIERRICNEHILLPT 535

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           D D++ +  LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 536 DIDFNVVSGLSKEVIDKLNDYKPYSVGQASRISGVTPAAISNLLVWLKKKGL 587


>gi|331703909|ref|YP_004400596.1| tRNA uridine 5 carboxymethylaminomethyl modification enzyme
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802464|emb|CBW54619.1| tRNA uridine 5 carboxymethylaminomethyl modification enzyme
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 629

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/621 (40%), Positives = 369/621 (59%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+GGGHAG EAA  +A+L   TALI      I +M CNP++GG  KG +VRE
Sbjct: 1   MKSNYDVIVVGGGHAGVEAALASARLNKKTALINLYEDKIATMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M + ADA  +Q ++LN  +GP V   R Q+D+E Y   M+  I +Q+NLD+I 
Sbjct: 61  IDALGGEMAKAADATALQTKLLNSSRGPGVWALRVQSDKEEYSKYMRNVIKNQKNLDLIT 120

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               G    E   ++ I + D +++    V++TTGT+L+  I  G  +  +G   +  + 
Sbjct: 121 RACTGLVYDENKTVTGIYLDDQTILNAKAVIITTGTYLKSEILKGVDRYESGPNNEKTTK 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQI 238
            +  S +       R KTGTPAR+   ++       +   +  + FSF T+  T   +Q 
Sbjct: 181 GISKSLIDLGIKLMRFKTGTPARVYRDSVDLTNAVLEPGTDMKLAFSFSTNTYTPIEQQQ 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +  + LET +II +N++ SA+YSG ++S GPRYCPS EDK+VRF E++ HQIF+EPE
Sbjct: 241 LCYLIHSTLETKKIIEDNLEKSAMYSGTVESIGPRYCPSFEDKVVRFKEKDTHQIFIEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            LN D  Y  G ST++P E+Q   ++++PG E V +    YAIEYD I+P +L P+LE K
Sbjct: 301 TLNGDTWYVQGFSTSMPIEVQELMLKSLPGFENVRVKHWAYAIEYDCIDPMQLSPSLELK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  LF AGQINGT+GYEEAA QGL+AGIN++RK + LD I   R ++YIGVMIDDL +K
Sbjct: 361 DVKNLFTAGQINGTSGYEEAAGQGLIAGINASRKIDGLDPIILRRDEAYIGVMIDDLINK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYR+ TSRAE+R+ LR DNA+ RL   G ++G I +    ++  Y++E       L
Sbjct: 421 GVWEPYRLLTSRAEHRLLLRNDNAETRLKQYGREIGLISDHEWNQYLIYVKEIEQAIKEL 480

Query: 479 KSLVLTSKNLSSTSISFKQ---DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           K +  T K+  + ++  K         + YE +  P   I  L    P  +K  +  ++ 
Sbjct: 481 KEIRFTPKSQLAINLKNKNQADLSHGYSGYEIIKIPTVDINELIEFIPSLQKLKTNQLQS 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE  +  Y  ++     ++   E++ IP D +YS +  L+ E K+KL  ++P N+ QA
Sbjct: 541 IVIEIRFEGYVKKERQLVDKLVKLERKKIPLDINYSKVDNLATEAKDKLEKIRPLNIGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKN 616
           S+I G+ PA + +LL Y+KK 
Sbjct: 601 SRITGVNPADIQMLLFYLKKQ 621


>gi|315453460|ref|YP_004073730.1| glucose inhibited division protein A-like protein [Helicobacter
           felis ATCC 49179]
 gi|315132512|emb|CBY83140.1| glucose inhibited division protein A homolog [Helicobacter felis
           ATCC 49179]
          Length = 626

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/616 (42%), Positives = 349/616 (56%), Gaps = 5/616 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EAA V AK+GA   ++T     +   SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 4   DIVVVGGGHAGLEAALVGAKMGARVHMLTLLVDNMALASCNPAIGGLGKGHLVKEIDALG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG +AD + +Q R+LN  KGPAVRG R Q D ++YR+  +   L   NL V Q     
Sbjct: 64  GVMGLLADKSALQCRILNASKGPAVRGTRAQIDMDIYRMEARNLALQTPNLSVSQEMAET 123

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +      + R   V+LTTGTFL+G++HIG  +   GR G+S S  L    
Sbjct: 124 LLLEGGAVVGVQTHIGKIYRAKKVILTTGTFLQGLVHIGTHQSQNGRFGESASIELSKHL 183

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                  GRLKTGT  RL G +I + + E  + D     FS  T      Q+ C +T TN
Sbjct: 184 SALGLQVGRLKTGTCPRLAGASIDFSQLEPHYGDSIPPKFSHKTHNFNPTQLPCYLTYTN 243

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH II  N+  + ++SG I+S GPRYCPSIEDKI RF ++  HQ+FLEP+  +    Y
Sbjct: 244 PNTHAIIEANLHQAPMFSGQIESVGPRYCPSIEDKICRFKDKERHQLFLEPQTRSASEYY 303

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
            NG+ST+LP EIQ Q I +I GLE   I R GYAIEYD++ P +L  TLETKKI  L+LA
Sbjct: 304 VNGLSTSLPFEIQEQVIHSIKGLENAQITRYGYAIEYDFVQPTQLQHTLETKKIPNLYLA 363

Query: 367 GQINGTTGYEEAAAQGLVAGINSA--RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           GQINGTTGYEEAAAQGL+AGIN+A             +R ++YIGVMIDDL  KG  EPY
Sbjct: 364 GQINGTTGYEEAAAQGLMAGINAALGLGLGAQKSFVLARNEAYIGVMIDDLVCKGTQEPY 423

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFT+RAEYR+ LR DNA  RL      LG +     +      ++ N     L+   +T
Sbjct: 424 RMFTARAEYRLLLREDNARLRLGAHAHALGLMRASEYQELQAQQEQINQALHTLQHTTIT 483

Query: 485 SKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                     +++                  F   +L +     R   S+V+E+++I   
Sbjct: 484 PNKQTLEKLQALNQTPINDKCNGVFLAGRDGFEEADLRAFFECLRNLDSVVLEQVKITCK 543

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y +Y  +Q     +++   +  IP DF++  +  L  E  EKLS  +P  LL+AS I G+
Sbjct: 544 YHSYIEKQSESIAKMQNLGESKIPSDFNFEKITGLGLEAIEKLSKHRPQTLLEASYISGI 603

Query: 602 TPAALNLLLIYIKKNT 617
           TPA + +L +Y+  + 
Sbjct: 604 TPANIEVLQLYLHLHA 619


>gi|218283640|ref|ZP_03489602.1| hypothetical protein EUBIFOR_02194 [Eubacterium biforme DSM 3989]
 gi|218215700|gb|EEC89238.1| hypothetical protein EUBIFOR_02194 [Eubacterium biforme DSM 3989]
          Length = 618

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/620 (37%), Positives = 355/620 (57%), Gaps = 9/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIVIG GHAG EA   ++++   TA++T     IGSM CNP++GG  KG +VRE
Sbjct: 1   MYKMYDVIVIGAGHAGIEACLASSRMNKKTAIVTLSKDMIGSMPCNPSVGGPAKGIVVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M   AD   +QF++LN  KGP V   R Q+D+  Y+  M+  +  Q++LD+I+
Sbjct: 61  IDALGGMMPIAADKTALQFKMLNTTKGPGVWSLRVQSDKIAYKRFMKEALEKQDHLDIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   +      + ++D + I   TVVLT GT++   +  G     +G       N+
Sbjct: 121 AACKSVVIKDGKAIGVELEDGTFIESKTVVLTAGTYMTSNVLRGHTSTVSGPEEQRTVNT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQ 237
           L  S       T RLKTGTPAR+   TI + K E Q    + + FS  T+        +Q
Sbjct: 181 LSKSLRDAGIRTFRLKTGTPARVKMDTIDFSKAEPQPGTNQFLRFSETTNPEDVLPFEKQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C +  T  +TH II  ++  SA+YSG +K  GPRYCPSIEDK+VRF ++  HQ+FLEP
Sbjct: 241 EICHLIYTQPKTHEIIHTHLHDSAMYSGLVKGVGPRYCPSIEDKLVRFADKERHQLFLEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           E    D +Y  G ST++P ++Q + + ++PGLE   I +  YAIEYD I+P ++ P +E+
Sbjct: 301 ESKELDTIYIQGFSTSMPIDVQEEMVHSLPGLEHCVIEKYAYAIEYDAIDPLQMKPNMES 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  LF AGQ+NGT+GYEEAA QGL+AG N+A K +  +     R ++YIGVM+DDL +
Sbjct: 361 KIVENLFTAGQVNGTSGYEEAAGQGLMAGANAALKVDGKEPFVLRRDEAYIGVMLDDLCT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYR+ TSRAEYR+ LR DNAD RL   G ++G + + R   F   ++     R  
Sbjct: 421 KGTKEPYRLLTSRAEYRLLLRHDNADQRLLEKGYEIGLVSQERYDAFKNKMEAIEVAREE 480

Query: 478 LKSLVLTSK---NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L +  +      +    S+ F+      +A + +  P  +++ L         +   + E
Sbjct: 481 LSNAHIKPNSDVDEYLKSLGFEPLAHGCSALDLIKRPKITVKGLAKYTG--LDYEDQINE 538

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I++ YA Y  +   +AK ++  EK  +  D DY ++  LS E ++KL+ ++P  L Q
Sbjct: 539 QIEIQTKYAGYIAKAKRDAKHLQQMEKMKLAHDLDYENMDNLSLEARQKLTEIRPLTLGQ 598

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           AS+I G+ P+ + +L + +K
Sbjct: 599 ASRISGINPSDIAILAMRVK 618


>gi|307297009|ref|ZP_07576825.1| glucose inhibited division protein A [Sphingobium chlorophenolicum
           L-1]
 gi|306877535|gb|EFN08763.1| glucose inhibited division protein A [Sphingobium chlorophenolicum
           L-1]
          Length = 616

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/617 (48%), Positives = 408/617 (66%), Gaps = 1/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIV+GGGHAGCEAA+ AA+ GAS AL+T + +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRTSYDVIVVGGGHAGCEAASAAARKGASVALLTFEKATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGL+GR ADAA I +R+LN  KG AV+GPR QADR+ YR  + R + +Q  LD+I+
Sbjct: 61  VDALDGLIGRAADAAAIHYRMLNSSKGAAVQGPRIQADRKRYRAEIHRLLDAQTGLDIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE A     ++ I+ + + D   +   TVVL TGTFL G +  G+     GR G+  + +
Sbjct: 121 GEAAQLLLSQDKIAGLALADGRTLSAPTVVLATGTFLGGKLFRGEETTIGGRTGERAATT 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D   GRLKTGTP RLDG+TI W + E+Q +D      S ++      Q+ C 
Sbjct: 181 LGVQLRALDLPIGRLKTGTPPRLDGRTIDWARLEEQPSDGGSWTMSALSPARILPQLSCA 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  TH II E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL 
Sbjct: 241 ITRTNDRTHAIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVIRFGDRDGHQIFLEPEGLE 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T++VYPNGIST+LP ++Q + IR++ GLE   I+ PGYA+EYD+I+P+ L  TLE + I 
Sbjct: 301 TNLVYPNGISTSLPADVQREMIRSMAGLEAAEIVVPGYAVEYDHIDPRALDATLEVRAIR 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGLVAG+N+A  +   + +   R  SYIGVMIDDL  +GV 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLVAGVNAAAYARGEEPLILDRASSYIGVMIDDLVLQGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR+ LR DNA  RL PIG +   +   R   +A    E       L   
Sbjct: 421 EPYRMLTARAEYRLRLRADNAGTRLAPIGHRHAILNAERIAHYAARNAERGRAEEELNR- 479

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L++  ++    + +QDG  R+ +E+  +P+ S + LF++ P     S  V + +  ++ 
Sbjct: 480 SLSATEMARAGAAVRQDGARRSLFEWARFPEVSRELLFTLAPALSNISPDVRDEILEDAH 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E  E++  E+ +IP DFD++S+  LS E+ E+L++ +P  L  A +I G+
Sbjct: 540 YAPYLDRQDTEIAEMRRNERVVIPADFDFASVGGLSTEMIERLNMARPDTLAAAGRIRGI 599

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAAL  +L++I++   
Sbjct: 600 TPAALAAVLVHIRRRAA 616


>gi|299145227|ref|ZP_07038295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_23]
 gi|298515718|gb|EFI39599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_23]
          Length = 628

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 370/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLTTGTFL G++H+G  K+P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTAWGVTFKAKCIVLTTGTFLNGLMHVGHHKLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C
Sbjct: 181 LTESIARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGETFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRSKKEAVEQIISFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALEKIGTTPLRQGCKLIEILNRPQVTIENIAEYVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|291520338|emb|CBK75559.1| glucose-inhibited division protein A [Butyrivibrio fibrisolvens
           16/4]
          Length = 565

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/562 (42%), Positives = 330/562 (58%), Gaps = 5/562 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDV+VIG GHAGCEAA  +A++G +T   T    ++  M CNP IGG  KGHLVRE
Sbjct: 4   VEETYDVVVIGAGHAGCEAALASARMGLNTICFTISMDSVAMMPCNPNIGGSSKGHLVRE 63

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG   D   IQ ++LN  KGPAV   R QAD+  Y   M++ +   ENL + Q
Sbjct: 64  LDALGGQMGINIDHTFIQSKMLNSSKGPAVHSLRAQADKAAYSQRMRKTMQDTENLTLRQ 123

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E N +  +     +   C   ++ TGT+LR     G +    G  G   +N 
Sbjct: 124 AEVTELIIENNKVCGVKTLSGATYHCKAAIICTGTYLRARCLYGDVIEHNGPNGLKAANY 183

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L +S +  + D  R KTGTPAR+D  +I + K E Q  D  ++PFSF T  + +   Q+ 
Sbjct: 184 LTDSLLANNVDMNRFKTGTPARIDSNSIDYSKMEIQLGDNPVVPFSFSTKREDVQIEQVP 243

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN +TH II  N+  S +YSG I+  GPRYCPSIEDK+VRF ++N HQ+F+EPEG
Sbjct: 244 CYLTYTNEKTHEIIRANLDRSPMYSGVIEGTGPRYCPSIEDKVVRFSDKNRHQLFVEPEG 303

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           LNT+ +Y  G+S+++PE++Q+   RT+PGLE   I+R  YAIEYD IN  +L  +LE K 
Sbjct: 304 LNTNEMYIGGMSSSMPEDVQYAMYRTVPGLENCKIVRNAYAIEYDCINATQLKASLEFKD 363

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GLF AGQ NG++GYEEAAAQGLVAGIN+A K  + + +   R++SYIGV+IDDL +K 
Sbjct: 364 INGLFAAGQFNGSSGYEEAAAQGLVAGINAALKVLEKNPMILDRSNSYIGVLIDDLVTKE 423

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRM TSRAEYR+ LR DNAD RL+ IG ++G + + R     +  ++     + +K
Sbjct: 424 TKEPYRMMTSRAEYRLLLRQDNADLRLSKIGYEVGLLSKERYDHVVEKERQIEEEVARVK 483

Query: 480 SLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + + ++      +               + +  P+     L  I PD  + S  V E +
Sbjct: 484 EINIGARKEVQALLESYGSIPLSNGIKLVDLIRRPELDYDKLAPIDPDRPELSEEVREEV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKF 558
            I   Y  Y  RQ  + K+ K 
Sbjct: 544 NIYIKYEGYLTRQEKQVKQFKN 565


>gi|77464807|ref|YP_354311.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides 2.4.1]
 gi|123590765|sp|Q3IYH4|MNMG_RHOS4 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|77389225|gb|ABA80410.1| Glucose-inhibited division protein, A family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 626

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/620 (52%), Positives = 422/620 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+VIGGGHAGCEAAA AA++G   AL T + S +G MSCNPAIGGLGKGHLVREID
Sbjct: 7   KHFDVVVIGGGHAGCEAAAAAARMGVQVALFTLRKSGLGVMSCNPAIGGLGKGHLVREID 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+MGR AD AGIQFR+LN KKGPAV+GPR QADR LYR A+QR + +Q  L VI+GE
Sbjct: 67  ALDGIMGRAADEAGIQFRLLNRKKGPAVQGPRAQADRRLYREAVQRLLAAQPGLTVIEGE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  + + D + +    V+LT+GTFL G+IHIG  + P GRMGD PS  L 
Sbjct: 127 VVDLQVNGGRVQGVSLADGTSVWAGRVILTSGTFLNGIIHIGDQRRPGGRMGDDPSQRLA 186

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +     GRLKTGTP RLDG+TI W + E Q  DE  + FSF+      RQI CGIT
Sbjct: 187 AVLGELSLARGRLKTGTPPRLDGRTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGIT 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D
Sbjct: 247 HTNARTHQIVRDNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADKEAHQVFLEPEGLDDD 306

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNGIST+LP E+Q  ++RTI GLE V I++PGYAIEYDY +P+EL PTLE K + GL
Sbjct: 307 TVYPNGISTSLPAEVQEAYVRTIAGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGL 366

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL AG+N+A    + + + FSR+ SY+GVMIDDLTS+GV EP
Sbjct: 367 YFAGQINGTTGYEEAAAQGLAAGLNAALSIREREPLHFSRSGSYLGVMIDDLTSRGVTEP 426

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R+SLR DNAD RLTPIG+ LGC+ + R++ F +  +     R+LL+    
Sbjct: 427 YRMFTSRAEFRLSLRADNADQRLTPIGLDLGCVSDARRESFNRKRELLEKGRALLEGSSF 486

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I   QDG  RTA+  +++ + +   +             + ++L  +  YA
Sbjct: 487 TPSQLNELGIQVSQDGMRRTAFAVMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYA 546

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  EA  +K +E   IP DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP
Sbjct: 547 QFILRQEEEAAALKRDEAIRIPADFDYAPLSGLSSELKSKLMRARPSTIAQAAQLEGMTP 606

Query: 604 AALNLLLIYIKKNTVKLNEI 623
           +AL L+L  +++       +
Sbjct: 607 SALTLILARLRRAGRDAAAV 626


>gi|195346742|ref|XP_002039916.1| GM15919 [Drosophila sechellia]
 gi|194135265|gb|EDW56781.1| GM15919 [Drosophila sechellia]
          Length = 661

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/631 (43%), Positives = 410/631 (64%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E          S +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDELDTQARRCSGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--- 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 EALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++++VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSNLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+  +D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHIDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F +        
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSARYQHFQQTEARLQSA 507

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   +     + ++   +    +TA++ L  P  + +I+ L  + P+   +   
Sbjct: 508 IDSLRRLRKHTHYWRQALNLPKAKASVEKTAFDMLGIPADNITIEKLIQLHPNELSWLKG 567

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
              + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL+++
Sbjct: 568 DRNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKLTLI 627

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 628 QPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|327354760|gb|EGE83617.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 698

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 391/636 (61%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIIVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   + V YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA------ 525
             L++LL++    S   +    +   D   R+A++ L   D SI ++             
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHSPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 526 ----RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|260221689|emb|CBA30505.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 628

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/615 (41%), Positives = 349/615 (56%), Gaps = 52/615 (8%)

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q N
Sbjct: 5   HLVKEVDAMGGAMALATDEAGIQFRILNSSKGPAVRATRAQADRVLYKAAIRRMLENQPN 64

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L + Q  V     E + +   V Q     R  TVVLT GTFL G IH+G     AGR GD
Sbjct: 65  LSLFQQAVDDLMVEGDRVVGAVTQVGIRFRGKTVVLTAGTFLDGKIHVGLNNYAAGRAGD 124

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-------ERLIPFSFM 229
            P+ SL     +     GRLKTGTP R+DG++I + K  +Q  D       + +   SFM
Sbjct: 125 PPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKCIEQPGDGVPGGMSDVMPVVSFM 184

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            +  +  +Q+ C IT TN  TH II      S +++G I+  GPRYCPS+EDKI RF ++
Sbjct: 185 GNVAMHPQQVPCWITHTNERTHDIIRSGFDRSPMFTGKIEGVGPRYCPSVEDKINRFADK 244

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ++ +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 245 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQYELVRSMAGLENAHILRPGYAIEYDYFDP 304

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL------------ 396
           + L  + ET++I GLF AGQINGTTGYEEAAAQG+ AGIN+A +   +            
Sbjct: 305 RSLKGSFETRQIGGLFFAGQINGTTGYEEAAAQGMFAGINAALQVRAMGGGDVALSAAGS 364

Query: 397 -----DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
                D     R  +Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT +G 
Sbjct: 365 ASYSDDTWLPGRDQAYLGVLVDDLITKGVTEPYRMFTSRAEFRLQLREDNADARLTEVGR 424

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFL 508
           +LG +   R   F +     +     L+S  +  +NL    S  +  K         + L
Sbjct: 425 ELGLVDNARWDAFCRKRDAVSRETERLRSTWVNPRNLAADESERVLGKSIEHEYNLADLL 484

Query: 509 SYPDFSIQNLFSIC---PDARKFSSLV---------------------IERLQIESSYAA 544
             P+ S   L S+       R    +V                     +E+++I + Y+ 
Sbjct: 485 RRPNVSYGGLMSLDHGKYANRDLLDVVSRETAGLPTVDAAEVAFVAAVVEQVEIAAKYSG 544

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ  E +     E   +P D DY  + ALS E +++LS  +P  L QAS++ G+TPA
Sbjct: 545 YINRQKDEVERAAHYENLRLPDDLDYMQVTALSIEARQRLSKYRPETLGQASRLSGITPA 604

Query: 605 ALNLLLIYIKKNTVK 619
            ++LL+I++KK   +
Sbjct: 605 TISLLMIHLKKGNFR 619


>gi|197245367|ref|NP_001127786.1| mitochondrial translation optimization 1 homolog [Nasonia
           vitripennis]
          Length = 662

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/625 (44%), Positives = 395/625 (63%), Gaps = 12/625 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVIVIGGGHAG EA A AA++GA T L+THK STIG MSCNP+ GG+GKG+L+RE+
Sbjct: 35  QEKFDVIVIGGGHAGTEACAAAARMGAKTLLVTHKKSTIGEMSCNPSFGGIGKGNLMREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+  R+ D +G+ +++LN +KGPAV G R Q DR LY+  +Q E+ +   L +I+ 
Sbjct: 95  DALDGICCRICDISGVHYKILNKRKGPAVWGLRAQIDRTLYKKNLQAELFNYPCLQIIES 154

Query: 123 EVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V       +      ++++D + +   +VV+TTGTFL+G IHIG    PAGR+ D PS 
Sbjct: 155 SVEDLLLHGDSPKCCGVILKDGTKVLSDSVVITTGTFLKGEIHIGLETRPAGRLNDEPSI 214

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
           +L ++  +  F  GRLKTGTP RL+  TI + K  +Q  DE   PFSFM+D +     +Q
Sbjct: 215 ALADTLDRLGFRIGRLKTGTPPRLEKSTIDFSKCIRQEPDEIPEPFSFMSDSVWLPPEKQ 274

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T     +I+ +N+  +   + D+K  GPRYCPSIE K++RF +   HQ++LEP
Sbjct: 275 LCCFLTHTGQGVLKIVKDNLHCNIHVTQDVK--GPRYCPSIESKVLRFPQL-SHQVWLEP 331

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ ++YP G+S  LP + Q + I+ IPGLE   +++PGY + YDY++P+EL   LET
Sbjct: 332 EGLDSSLIYPAGLSCTLPADQQEELIKHIPGLENAKMVKPGYGVAYDYVDPRELTSALET 391

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI GLFLAGQINGTTGYEEAAAQG+VAG+N+A K      +  SRT+ YIGV+IDDLT+
Sbjct: 392 KKIPGLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVFNKPPLIISRTEGYIGVLIDDLTT 451

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE+R+SLRPDNAD RLT  G  +GC+ E R ++    +Q  +     
Sbjct: 452 GGTTEPYRMFTSRAEFRVSLRPDNADERLTQKGYTVGCVSEERWRKTESLLQNVHECLEA 511

Query: 478 LKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIE 534
           L +   T KN      +   +    +TA+  L   D ++ +L    P+      +  + +
Sbjct: 512 LNNTSKTHKNWQKCIRLRDNKQNLPKTAFALLQNEDVTLDDLAPHVPELLYLEKNPKLSQ 571

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNLL 593
           R++IE++Y      Q  E +EI+  E   IP + D++S    +S E +EKL+  +P  + 
Sbjct: 572 RVKIEATYTHAVEEQKREVEEIRKNESMAIPSNIDWNSQSLNISVEDREKLADAQPQTIA 631

Query: 594 QASKIEGMTPAALNLLLIYIKKNTV 618
            A  I G+TPAA+  L  ++K N +
Sbjct: 632 AAYNIAGVTPAAVVKLYYHVKHNKI 656


>gi|88607384|ref|YP_504843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma phagocytophilum HZ]
 gi|123495646|sp|Q2GLA8|MNMG_ANAPZ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|88598447|gb|ABD43917.1| pyridine nucleotide-disulfide oxidoreductase [Anaplasma
           phagocytophilum HZ]
          Length = 628

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/591 (48%), Positives = 385/591 (65%), Gaps = 6/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+THK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+V D + I   +LN  KGP
Sbjct: 28  KTLLVTHKVESIGEMSCNPAIGGIAKGVVVREVDALDGLMGKVIDKSSIHSIILNRSKGP 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT----EKNIISSIVMQDNSMI 145
           AV GPR QADRE+Y+  M+  +L  ENL VI  EV  F      E+  ISS+++ +  +I
Sbjct: 88  AVWGPRAQADREVYKPTMRDMVLHYENLTVISEEVVDFTVDGVEERPQISSVLLSNGELI 147

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           + + +V  TGTFL G IH+G    PAGR+GD PS  L  +     F  GRLKTGTP R+D
Sbjct: 148 KTTRLVFATGTFLGGTIHVGNESFPAGRIGDKPSTKLPQALTAHGFQLGRLKTGTPPRID 207

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
             +I W K  +Q  D    PFSFM++ ++  QI C +T TN +TH II  N+  +     
Sbjct: 208 RDSINWSKLLEQKGDVLPTPFSFMSECVSLPQISCYVTHTNEKTHEIIRRNLHLAGSRCE 267

Query: 266 DIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
            +     PRYCPSIE+KI RF +   HQIFLEPEGL T+ VYPNGIST+ P E+Q + +R
Sbjct: 268 SLLDVMAPRYCPSIEEKIRRFPDHKSHQIFLEPEGLETNSVYPNGISTSCPIEVQLEMLR 327

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE+  ++R GY +EY++I+P+EL+ TLETKKI GLF AGQINGTTGYEEAA QG+V
Sbjct: 328 SINGLEQAVMLRHGYTVEYNFIDPRELYHTLETKKIKGLFCAGQINGTTGYEEAAGQGIV 387

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A       + +   R+DSYIGVMIDDL + G  EPYR+FTSRAEYR++LR DNAD
Sbjct: 388 AGANAALSLVQNQEPLVLKRSDSYIGVMIDDLVTLGTSEPYRLFTSRAEYRLTLRSDNAD 447

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT IG     + + R  R ++  QE + L + LK +V T  +++   I+  Q+G+ + 
Sbjct: 448 MRLTEIGRAYSLVSQERFDRLSQKKQEMHALLNALKGIVATPNDIAEYDIAIAQNGEKKN 507

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E LS+P+ +++ L  I P  R FS+  +  ++IE  YA Y  RQ  + K    EE   
Sbjct: 508 AFELLSHPNINMEVLLKIWPSLRSFSAGTLALMEIEGKYAPYLKRQEADIKSFLEEENLS 567

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IPKD  YS +  LS E +EKL  +KPF++  A +I G+TPAA+  +LI+++
Sbjct: 568 IPKDILYSDVYGLSKEAQEKLQAVKPFSIGAARRIPGITPAAIANILIHLR 618


>gi|217978726|ref|YP_002362873.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylocella silvestris BL2]
 gi|254811514|sp|B8EQ21|MNMG_METSB RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|217504102|gb|ACK51511.1| glucose inhibited division protein A [Methylocella silvestris BL2]
          Length = 620

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/592 (54%), Positives = 408/592 (68%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TAL+TH  +TIG MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN  KGP
Sbjct: 29  KTALLTHSRATIGIMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNRAKGP 88

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVRGPR QADR LYR AM+  +    NL +++GE A    E   ++ IV  D   + C  
Sbjct: 89  AVRGPRAQADRALYRKAMRAALAETANLSIVEGEAADLRIENGEVTGIVTADGRALSCRA 148

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
            V+TTGTFLRGVIH GK+ + AGR+G++P+  L  +     F  GRLKTGTP RLDGKTI
Sbjct: 149 AVITTGTFLRGVIHRGKVTMAAGRIGENPAIRLGETLEARGFAMGRLKTGTPPRLDGKTI 208

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            W   ++Q  D    PFS +T  I N QI+C IT T + TH++I +NI  S +YSG I  
Sbjct: 209 DWAGLDRQAPDPDPQPFSTLTASIVNPQIDCFITHTTVATHKVIRDNIGQSPVYSGAIGG 268

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF +RN HQIFLEPEGL+ D +YPNGIST+LPEE+Q  F+RTIPGL
Sbjct: 269 RGPRYCPSIEDKVVRFEDRNSHQIFLEPEGLDDDTIYPNGISTSLPEEVQDAFLRTIPGL 328

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E+V +++PGYAIEYD+I+P+EL  TLETKK+ GLFLAGQINGTTGYEEAAAQGL AG+N+
Sbjct: 329 ERVAVLQPGYAIEYDFIDPRELKSTLETKKLGGLFLAGQINGTTGYEEAAAQGLAAGLNA 388

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           A ++     I F R+++Y+GVMIDDL  +GV EPYRMFTSRAEYR+SLR DNAD RLT  
Sbjct: 389 AARAGGGAPILFERSEAYLGVMIDDLVCRGVTEPYRMFTSRAEYRLSLRADNADQRLTGA 448

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
           G+K GCIG  R   F   +      R LL+   LT    +   +    DG  R A+E L+
Sbjct: 449 GLKWGCIGMERSSAFRTKMAALQHARGLLEGFNLTPNEAAQHGLKINHDGVRRGAFELLA 508

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
             D S+  L +I P+ R+    + E+++I++ YA Y  RQ  + +  + +E  LIP   D
Sbjct: 509 LADTSLAKLQAIWPELREIEPSIAEQIEIDAKYAVYLDRQKRDIEAARRDEALLIPDSVD 568

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           Y  L  LS E++ +L  ++P +L QAS+IEGMTP A+ LL   +++     N
Sbjct: 569 YDLLTGLSTEIRGRLRQIRPRSLAQASRIEGMTPVAMTLLAATVRRVGADSN 620


>gi|157363553|ref|YP_001470320.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermotoga lettingae TMO]
 gi|205831565|sp|A8F522|MNMG_THELT RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|157314157|gb|ABV33256.1| glucose inhibited division protein A [Thermotoga lettingae TMO]
          Length = 605

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/603 (42%), Positives = 351/603 (58%), Gaps = 7/603 (1%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
            EAA   A+LG  TAL+T     +    CNPAIGG  KG +VREIDAL G M +V D   
Sbjct: 1   MEAALATARLGFKTALLTSNLDRVAWAPCNPAIGGPAKGIIVREIDALGGEMAKVTDETM 60

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           I  R+LN  KG +VR  R Q D+  Y   M+R +   +NL +   +V     EK  + S+
Sbjct: 61  INVRMLNTSKGASVRALRAQIDKVSYSQKMKRILEETQNLYLRHSQVCDILVEKGKVKSV 120

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V       +   ++LT GTFL G I IG     AGR+GD PS  L  S  K+     R K
Sbjct: 121 VDTLGIEYKSRAIILTAGTFLNGKIFIGHATFEAGRLGDFPSKGLTESLEKYGIRFQRFK 180

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECGITRTNLETHRIIMEN 256
           TGTPAR+ GK+I + K  +Q   +  + FS F    I ++   C +T TN +TH II +N
Sbjct: 181 TGTPARILGKSIDFSKMIRQDTSKEPLCFSYFDKPVILSKDYPCWLTYTNEKTHEIIRKN 240

Query: 257 IKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           ++ S +Y     I   GPRYCPSIEDK+V+F  +N HQIF+EPEG  T   Y NG+ST+L
Sbjct: 241 LRFSPLYGDVKLIVGKGPRYCPSIEDKVVKFPSKNMHQIFVEPEGKTTGEYYLNGLSTSL 300

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + IRTIPGLE  +I RP YAIEYDY +P +L+ TLE+K + GLFLAGQINGT+G
Sbjct: 301 PYEVQLEMIRTIPGLENAHITRPAYAIEYDYADPTQLYHTLESKIVEGLFLAGQINGTSG 360

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAA QGL+AGIN+A K    +     R+++YIGVMIDD+ +KGV EPYR+ TSRAE+R
Sbjct: 361 YEEAAGQGLIAGINAALKLRGENQFTLDRSEAYIGVMIDDIVTKGVDEPYRILTSRAEFR 420

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---T 491
           + LR DNA  RL+  G ++G I +   +               LK + +      +   T
Sbjct: 421 LLLRHDNAHLRLSKKGYQIGLIPKWFYEEILTLESRIKTEIERLKQVSIKPTGQINDFLT 480

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
           SI+     +  T ++ L  PD + + L S+ P     S  VIE++++ + Y  Y  + + 
Sbjct: 481 SINTHPLRQPTTLFQILKRPDITYEQLRSLDPSPMD-SPEVIEQIELTAKYEDYIEKMLE 539

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           E K     EK  IP+  DY  +P LS   +EKL  ++  N+LQ S++ G+TPA +  L+ 
Sbjct: 540 ETKVFNDLEKITIPEAIDYGKIPNLSVVAREKLEKIRLRNVLQVSRVPGITPADILALIT 599

Query: 612 YIK 614
           Y+K
Sbjct: 600 YLK 602


>gi|239613167|gb|EEQ90154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis ER-3]
          Length = 698

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 391/636 (61%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIIVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   + V YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGAVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA------ 525
             L++LL++    S   +    +   D   R+A++ L   D SI ++             
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHNPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 526 ----RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|261190947|ref|XP_002621882.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis SLH14081]
 gi|239590926|gb|EEQ73507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ajellomyces dermatitidis SLH14081]
          Length = 698

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 391/636 (61%), Gaps = 24/636 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+V D AGIQFR+LN  KG AV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVTDKAGIQFRILNRSKGEAVWGPRAQIDRVLYQKNMLEELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIVVSKDHSPEGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLESFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFKLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPVPFSYLNKRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   + V YPNGIS  +P + Q   +RT+ GLE V++++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPNEVIYPNGISMTIPADAQLAMLRTVAGLENVHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQ+NGTTGYEEAA QG++AGIN+   S        SR+DS+IG+M
Sbjct: 394 RPTLETKLISGLYLAGQVNGTTGYEEAAGQGVLAGINAGLASKGKPPFTLSRSDSFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++  ++ 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQEQV 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA------ 525
             L++LL++    S   +    +   D   R+A++ L   D SI ++             
Sbjct: 514 TELQTLLENTKFPSTLWARKGFAVHCDHNPRSAFDLLRLRDVSIDDIIPHIEPPSSKGGK 573

Query: 526 ----RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F   +  R+ IE  YA Y       A+  + +E  L+P D +YS +  LS E +
Sbjct: 574 AYTTSSFPPEIKYRVSIEGRYAPYVTMHEARARSFEKDEALLLPPDMNYSLITGLSTEER 633

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L  ++P ++  A +IEGMTP A   LL+Y++KNT
Sbjct: 634 AALERVRPESIGMARRIEGMTPVAALKLLVYVRKNT 669


>gi|195585718|ref|XP_002082627.1| GD11675 [Drosophila simulans]
 gi|194194636|gb|EDX08212.1| GD11675 [Drosophila simulans]
          Length = 661

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/631 (43%), Positives = 409/631 (64%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E            +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCCGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--- 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKASVDFSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++++VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSNLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+  +D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTKHIDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F +        
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQQTEARLQSA 507

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   +     + ++   +    +TA++ L  P  + +I+ L  + P+   +   
Sbjct: 508 TDSLRRLRKHTHYWRQALNLPKAKASVEKTAFDMLGIPADNITIEKLIQLHPNELSWLKG 567

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
              + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL+++
Sbjct: 568 DRNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKLTLI 627

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 628 QPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|241243540|ref|XP_002402151.1| glucose inhibited division protein, putative [Ixodes scapularis]
 gi|215496274|gb|EEC05914.1| glucose inhibited division protein, putative [Ixodes scapularis]
          Length = 665

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/632 (43%), Positives = 396/632 (62%), Gaps = 18/632 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREIDA 64
           YDVI++GGGHAG EAA+ +A++G +T L+TH+  TIG  MSCNP+ GG+GKGHL+REIDA
Sbjct: 39  YDVIIVGGGHAGTEAASASARMGCNTLLLTHRFDTIGEFMSCNPSFGGIGKGHLMREIDA 98

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G++ D +GI +R+LN +KGPAV GPR Q DR LY+  +Q  +    NL ++ G V
Sbjct: 99  LGGVCGKICDLSGISYRILNRRKGPAVWGPRAQIDRTLYKRHIQSYLKDHPNLTILCGSV 158

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                E    K     I ++D S I   +V+LTTGTFLRG I+IG    PAGR+GD P+ 
Sbjct: 159 EDLVLEEGGHKKRCCGIRLEDGSEIYSHSVILTTGTFLRGQINIGLQTYPAGRLGDKPAI 218

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            L  +  + +F  GRLKTGTP RLDG+TI +   + Q  D+   PFS+    +      Q
Sbjct: 219 GLAQTLERLEFRLGRLKTGTPPRLDGRTIDYSNLKIQLGDDPPEPFSYSNSSVWIKAEDQ 278

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +   +T T  E   ++MEN+        +I   G RYCPSIE K++RF  R  HQ++LEP
Sbjct: 279 VPMYLTYTTPEVDALVMENLHLDRHVKEEI--TGVRYCPSIESKVLRFKGR-SHQVWLEP 335

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+T VVYPNGIS  LP ++Q + +R +PG   V++IRPGY +EYD+I+P+++ P+LET
Sbjct: 336 EGLDTHVVYPNGISCTLPADVQLKLVRCLPGCRDVDMIRPGYGVEYDFIDPRQVKPSLET 395

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLF AGQINGTTGYEEAAAQ + +   S+ K  + D    +R + YIGV++DDLT+
Sbjct: 396 KEVPGLFFAGQINGTTGYEEAAAQ-VSSFCFSSSKVCRKDPFVVTRLEGYIGVLVDDLTT 454

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G LEPYRMFTSRAE+R+SLRPDNAD RLT  G ++GC+   + +   +  +  +  +  
Sbjct: 455 QGTLEPYRMFTSRAEFRLSLRPDNADLRLTERGREVGCVAAEQSRATCEVRRILDEAQHF 514

Query: 478 LKSLVLTSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF---SSLVI 533
           L S V +S   S    +    + + ++A E L  PD +I+++ S+ P   +       ++
Sbjct: 515 LGSQVQSSHKWSDLMGLPESTNPQCKSALEMLGNPDVTIEHITSLFPTELETVRSRPDLM 574

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNL 592
           +RL+IE+ YA    +Q  E  E++  E   +P D DY      LSNE++ KL   KP  +
Sbjct: 575 KRLKIEAMYANLVAQQEKEILELEETEMLQLPCDIDYEDPSLNLSNEIRGKLQAAKPSTV 634

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
             AS+I GMTP A+  LL  + +   KL+ + 
Sbjct: 635 GAASRIPGMTPVAILRLLR-LTRQKQKLSSVA 665


>gi|194754892|ref|XP_001959726.1| GF11898 [Drosophila ananassae]
 gi|190621024|gb|EDV36548.1| GF11898 [Drosophila ananassae]
          Length = 663

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/629 (44%), Positives = 404/629 (64%), Gaps = 22/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 32  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 91

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+QRE+ S  NL++    V 
Sbjct: 92  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQRELHSTPNLEIRAAAVD 151

Query: 126 GFNTE-------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               E             +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P
Sbjct: 152 NILIEDDTPDSQNRRCGGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAP 211

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
           + +L  +  +  F  GRLKTGTP R+   +I + + E+   D+  +PFSF+   +     
Sbjct: 212 AKALGEAIDRLGFRMGRLKTGTPPRIAKSSIDFSQLERHEGDDPPMPFSFLNKNVWIPTK 271

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++L
Sbjct: 272 EQLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWL 328

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL++ +VYP GIS  LP E Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTL
Sbjct: 329 EPEGLDSPLVYPQGISCTLPHEQQIELVHAIQGLEKAEVVQPGYGVEYDFIDPRELYPTL 388

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMID 413
           ETK++ GLF AGQINGTTGYEEAAAQG++AG N+A K        +  SRT+ YIGV+ID
Sbjct: 389 ETKRVQGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTLHKDGKQLTISRTEGYIGVLID 448

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G   G + + R + F K  +    
Sbjct: 449 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYDFGLVSKHRYEHFRKTEERLQS 508

Query: 474 LRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF-- 528
               L+ L   +     +  +   +    +TA+E LS P  + +++ L  + P    +  
Sbjct: 509 AIDSLRKLRKHTHYWRQALDLPIAKASVEKTAFEMLSIPADNITVEQLIQLHPKELSWLA 568

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSI 586
               + ER++IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL++
Sbjct: 569 DDRNLAERIKIEALYSFFVEEQQRDVEDVRREERLTIPADIDYFSKTLSLSNEERQKLTL 628

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P  +  AS+I+G+TP+ +  ++ Y+KK
Sbjct: 629 IQPQTIAAASRIQGVTPSTIVRIMKYVKK 657


>gi|293368669|ref|ZP_06615276.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
 gi|292636311|gb|EFF54796.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
          Length = 628

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 370/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C
Sbjct: 181 LTESIARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALEKIGTTSLRQGCKLIEILNRPQVTIENIAEYVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 NPETIAQASRIPGVSPSDINVLLV 624


>gi|153807190|ref|ZP_01959858.1| hypothetical protein BACCAC_01468 [Bacteroides caccae ATCC 43185]
 gi|149130310|gb|EDM21520.1| hypothetical protein BACCAC_01468 [Bacteroides caccae ATCC 43185]
          Length = 628

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/624 (41%), Positives = 370/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + +  + +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWRERLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTVWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM T     +Q++C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDARSVHFDQMETQDGECDFHKFSFMNTSTRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ + +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILRDGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMDIQIAALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKVI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG +AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGAIAGINAHINCHGGEEFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYKLGLAKEDRYRLMKSKKEAVEQIISFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS----- 529
             +    ++     I      +     E L+ P  +I+N+    P    +  K +     
Sbjct: 481 YSMKPALINDALEKIGTTPLRQGCKLIEILNRPQVTIENIAEHIPAFQRELEKVTSANQD 540

Query: 530 --SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYSS+ +LS E ++KL+ +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSSIQSLSTEARQKLTKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|24658174|ref|NP_611677.1| CG4610 [Drosophila melanogaster]
 gi|7291427|gb|AAF46854.1| CG4610 [Drosophila melanogaster]
 gi|21429996|gb|AAM50676.1| GH24245p [Drosophila melanogaster]
 gi|220950036|gb|ACL87561.1| CG4610-PA [synthetic construct]
          Length = 661

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 407/628 (64%), Gaps = 21/628 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E          + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--- 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHEGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSSLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHSDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F +        
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQQTEARLQSA 507

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   +     + ++   +    ++A++ L  P  + +I+ L  + P+   +   
Sbjct: 508 IESLRRLRKHTHYWRQALNLPKAKASVEKSAFDMLGIPADNITIEQLIHLHPNELSWLKG 567

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
              + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL+++
Sbjct: 568 ERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKLTLI 627

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  +  AS+I+G+TP+ +  +L Y+KK
Sbjct: 628 QPQTIAAASRIQGVTPSTIVRILKYVKK 655


>gi|328699223|ref|XP_001949953.2| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 1
           [Acyrthosiphon pisum]
          Length = 657

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/632 (43%), Positives = 410/632 (64%), Gaps = 15/632 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ YDVIV+GGGHAG EA + AA++GAST L+THK S++G MSCNP+ GG+GKGHL+RE
Sbjct: 27  FSKQYDVIVVGGGHAGTEACSAAARMGASTLLVTHKKSSVGEMSCNPSFGGIGKGHLMRE 86

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-LSQENLDVI 120
           IDALDGL  ++ D +GI +++LN +KGPAV G R Q DR+LY++ MQ E+  +  NL++I
Sbjct: 87  IDALDGLCAKICDLSGIHYKILNRRKGPAVWGLRAQVDRKLYKMYMQAELFENTPNLNII 146

Query: 121 QGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           +G V     + N   + +++++ ++IR   V+LTTGTFL G ++ G    P GR+   PS
Sbjct: 147 EGSVDNILLDNNNQCTGVLLENGTLIRTKCVILTTGTFLNGEMYSGMTVKPGGRINSKPS 206

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-- 237
             L N+  +  F+TGR+KTGTP R++ ++I +     Q  D+   PFSFM + +  +   
Sbjct: 207 IGLANTLKRLGFNTGRMKTGTPPRIEKQSINFTNLNYQSGDDLPTPFSFMNNSVWLKPED 266

Query: 238 -IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
            I+  +T TN + H+I+++N+  +     ++K  GPRYCPS+E K ++F +R  HQI+LE
Sbjct: 267 QIKSYLTYTNSKVHQIVIDNLSVNRHIKEEVK--GPRYCPSLESKSLKFRDR-HHQIWLE 323

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
            EG +++VVYPNG+S  LPE++Q + IR+I GLE       GY +EYDY++P+EL+PTLE
Sbjct: 324 IEGFDSNVVYPNGLSCTLPEDLQVKMIRSINGLENAQHYISGYGVEYDYVDPRELYPTLE 383

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TKKI  LF AGQINGTTGYEEAAAQG++AGIN+   S   + +  SRT++YIGV++DDLT
Sbjct: 384 TKKIGHLFFAGQINGTTGYEEAAAQGILAGINAGASSLNRNSLTLSRTEAYIGVLVDDLT 443

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++G  EPYRMFT RAE+R+ LRPDNAD RLT  G  +GC+ + R  +             
Sbjct: 444 TQGTDEPYRMFTGRAEFRLHLRPDNADIRLTQKGYDIGCVSKTRYDQTLSIRSSLEEGIK 503

Query: 477 LLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDA---RKFSS 530
           LL S+  T      S  +   ++ +T+TA+E L   +   +++ L  I PD    +   +
Sbjct: 504 LLTSVSQTMYKWKKSLGLKTSRNPETKTAFEILGLSNEGITLRQLEMILPDNFGGQFEDN 563

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKP 589
            + ERL+IE+ Y A T  Q  + + ++ ++  L+PKD DY+    ++S E  EKLS ++P
Sbjct: 564 RIRERLKIEALYQASTYDQQEDIERVEVDQSLLLPKDIDYTHTSLSISKEEIEKLSYIQP 623

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             +  A +I G+ P+ +  LL YIK   + ++
Sbjct: 624 QTIGAAGRIPGIKPSTVLRLLYYIKNQKINIS 655


>gi|166092135|gb|ABY82114.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Callithrix jacchus]
          Length = 703

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/641 (44%), Positives = 404/641 (63%), Gaps = 26/641 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +++ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVILVDGSTVYSESVILTTGTFLRGMIVIGLEMHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSFM + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSLPFSFMNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++     I   GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETI--RGPRYCPSIESKVLRFPNR-QHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVNRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G  + GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+  +S    +                A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFSSSKWKNLIPEASISTSRSLPVRALDVLKYEEVDVDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
              +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAAMNE 673


>gi|262038132|ref|ZP_06011533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
 gi|261747856|gb|EEY35294.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia goodfellowii F0264]
          Length = 634

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/626 (37%), Positives = 355/626 (56%), Gaps = 17/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+G GHAG EAA  A++LG  TAL T     I  MSCNP+IGG GK HLV E
Sbjct: 1   MNKNYDVIVVGAGHAGVEAALAASRLGLKTALFTIYLDNIAMMSCNPSIGGPGKSHLVSE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  +  QENLD+IQ
Sbjct: 61  LGMLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYRYRIKMREVLEKQENLDIIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G V     E   I  +  +         V+L TGTFL+G   IG +K  AGR G+  S+ 
Sbjct: 121 GIVTDLILENGEIRGVEDKLGVKYGAKAVILCTGTFLKGQFIIGDVKYSAGRQGEPSSDE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +   ++ F+  R +T TP R+D +TI + KT++   +E+   FS+ T+K  N  +   
Sbjct: 181 LPDKLAEYGFELDRYQTATPPRIDKRTIDFSKTQELKGEEKPRYFSYETEKEYNPVLPTW 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T     E +K+S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + 
Sbjct: 241 LTFTTEKTIETGKEMLKYSPIVTGIVSTKGPRHCPSLDRKILNFPEKTDHQIFLEQESVE 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++ +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EY++I   +L   LETK I 
Sbjct: 301 SNEIYVNGFTTAMPPFAQEAMLKTIAGLENAKIVRYGYAVEYNFIPAYQLNLNLETKVIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL+ AG INGT+GYEEAA QG +AG+N+ARK    + I   R++ YIGV+IDD+ +K   
Sbjct: 361 GLYTAGTINGTSGYEEAACQGFIAGVNAARKILGKEEIVIDRSEGYIGVLIDDIINKKTP 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+  SRAEYR++LR DN   RL     ++G + + + +   K   + +     LK++
Sbjct: 421 EPYRVLPSRAEYRLTLRQDNIFIRLFEKSKEIGLLRKEKLEELEKAKNQIDQETERLKTI 480

Query: 482 VLTSKNL----------------SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
            +                     ++  IS        +A+EFL+  + +  NL     + 
Sbjct: 481 TVYPTKETNEKLKEIGKIFNQKNNNEEISVNSANSPVSAFEFLARKEITYDNLSKFI-ET 539

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           ++FS +V E+++I + Y  +  R+  + ++ K  E+  IP++ DY  +  LSN     L+
Sbjct: 540 KEFSPIVKEQIEINAKYNVFIEREKTQIEKFKKLEEMKIPENIDYEKIRGLSNIAMSGLT 599

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLI 611
             KP  + QAS+I G+T   + +L+ 
Sbjct: 600 YGKPHTVGQASRISGVTYNDIGILIA 625


>gi|110004173|emb|CAK98511.1| probable glucose inhibited division protein a [Spiroplasma citri]
          Length = 626

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/624 (38%), Positives = 361/624 (57%), Gaps = 6/624 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EA+  AA++   T L+T     I  M CNP+IGG  KG +VREID
Sbjct: 2   KKYDVIVIGAGHAGVEASLAAARMQKKTLLVTLHKDKIALMPCNPSIGGPAKGIVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M + ADA  +Q ++LN  +GPAV   R Q+D+  Y   MQ+ I  Q+NLD+ +G 
Sbjct: 62  AIGGEMAKAADATALQMKLLNSSRGPAVWALRAQSDKIQYAKYMQKVIEKQDNLDLYEGA 121

Query: 124 VAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V     +  N    ++++D +      V+LTTGT+++ ++  G  K   G  GD  +  L
Sbjct: 122 VQSLLVDDDNNCYGVMLKDQTQFFAKKVILTTGTYMQSLVLQGMTKKAEGPDGDITTAGL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIEC 240
                   F+  RLKTGTPAR+   +I + K + +   +  + FS+ T   T    Q  C
Sbjct: 182 STQLKHLGFELFRLKTGTPARVLNTSIDYSKAQPEQGSDLQLAFSYSTKTFTPLEEQELC 241

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +  +  +TH I+  N+  SA+YSG++K  GPRYCPS EDKIVRF ++  HQIFLEPE  
Sbjct: 242 WLIHSTPKTHSIVQNNLTASAMYSGNVKGTGPRYCPSFEDKIVRFADKPRHQIFLEPESK 301

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           + + +Y  G ST++P ++Q + +R++PG E V +++  YAIEYD + P +L  TLETKKI
Sbjct: 302 SLNTIYVQGFSTSMPIDVQEKMLRSLPGFENVEVLKWAYAIEYDAVVPTQLKHTLETKKI 361

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L+ AGQINGT+GYEEAA QGL+AGIN+    ++ +     R  +YIGV+IDDL +KG 
Sbjct: 362 KNLYTAGQINGTSGYEEAACQGLMAGINAVLSIDQKEPFILRRDQAYIGVLIDDLITKGT 421

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DN++ RL     +LG I ++    +   +Q YN +  LLK 
Sbjct: 422 EEPYRLLTSRAEYRLLLRNDNSEERLKNYAYQLGLIDQKSWTEYQNNVQSYNEVMQLLKE 481

Query: 481 LVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
              T+K+       ++   +  +  + Y  L  P+  ++ L    P      S + + L 
Sbjct: 482 TYFTAKSPLIQKLANLGVTKITERISGYNLLKRPNIELKYLEDELPPLNNLKSFLKQNLL 541

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   +  Y  ++   A +    E +LIP + +Y  +  L+ E +EK   ++P ++ QA++
Sbjct: 542 INIRFEGYIKKEQEIALKTIKLENKLIPANLNYDLVDNLALEAREKFKKIRPISIGQANR 601

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+ PA + +LL ++KK  +  N
Sbjct: 602 ISGINPADIQMLLFHLKKMELDAN 625


>gi|19703359|ref|NP_602921.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24636854|sp|Q8RHA1|MNMG1_FUSNN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG 1; AltName: Full=Glucose-inhibited division
           protein A 1
 gi|19713421|gb|AAL94220.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 628

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/625 (38%), Positives = 359/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MNKDYDVIVVGAGHAGVEAALASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             I+ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCVEEILVEDIKDTQNSNYIKKITGIKTRLGIIYNAKVIVLATGTFLKGKIVIGDVSYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSDKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKEKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRYGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE KKISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKKISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKSINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    S    ++  K   A E L   D S  NL  +  +   +
Sbjct: 481 YMEINNLKNISVSMNEANKFLESLDIEERFVKGVKASEILKIKDVSYDNL-KVFLNLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L  ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLDEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ Y+
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAYM 624


>gi|195123765|ref|XP_002006373.1| GI21007 [Drosophila mojavensis]
 gi|193911441|gb|EDW10308.1| GI21007 [Drosophila mojavensis]
          Length = 663

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/629 (44%), Positives = 406/629 (64%), Gaps = 22/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+REIDAL
Sbjct: 27  YDVVVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREIDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL +    V 
Sbjct: 87  DGVCARCCDRSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQQELFSMPNLQIRAASVD 146

Query: 126 GFNTE-------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               +           + +++++  ++R  +VVLTTGTFLR  I+IG    PAGR+GD P
Sbjct: 147 NLQIDADESTSNGTRCNGVLLENGELVRSHSVVLTTGTFLRAHINIGLEVRPAGRIGDQP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235
           + +L  +  +  F  GRLKTGTP R+   ++ + + E+  AD+  +PFSFM   +     
Sbjct: 207 AKALGEALNRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEADDPPMPFSFMNRDVWLPAK 266

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T    + I+ +N+  +   + +I   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQMHCYLTYTTPRVNEIVRDNLHVNRHVTEEI--TGPRYCPSIESKVLRFGAR-VHQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ ++YP GIS  LP   Q + +R I GLEK  +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLIYPQGISCTLPHPQQIELVRAIKGLEKAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK--SNKLDCICFSRTDSYIGVMID 413
           ETK+++GLF AGQ+NGTTGYEEAAAQG++AG N+A +        +  SRT+ YIGV+ID
Sbjct: 384 ETKRVTGLFFAGQLNGTTGYEEAAAQGIIAGANAAGRTVHQDGRQLNISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E+R + F +       
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTRKGHEFGLVSEQRYEHFQQTEHRLKR 503

Query: 474 LRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF-- 528
               L+SL   S     +  +   +    ++A++ LS P  + S++ L  +CP    +  
Sbjct: 504 GIEALRSLQKHSNYWRQALGLPQSKASIQKSAFDMLSVPAENISVKQLIELCPTELGWLR 563

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSI 586
               +  RL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL++
Sbjct: 564 ADDELATRLKIEALYSFFVDEQQRDVEDVRREERLCIPSDIDYFSKSLSLSNEERQKLTL 623

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P  +  AS+I+G+TP+ +  LL Y+KK
Sbjct: 624 IQPQTIAAASRIQGVTPSTILRLLKYVKK 652


>gi|212550623|ref|YP_002308940.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548861|dbj|BAG83529.1| glucose inhibited division protein A [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 624

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/624 (40%), Positives = 358/624 (57%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAA+ AA LG+ T LIT   + I  MSCNPA+GG+ KG ++RE
Sbjct: 1   MTFGYDVIVIGAGHAGCEAASAAANLGSKTLLITMDMNRIAQMSCNPAVGGIAKGQIIRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG +AD   IQFR+LN  KGPA+  PRTQ DR  +    +  + S  NL + Q
Sbjct: 61  IDALGGQMGLIADQTSIQFRMLNRSKGPAMWSPRTQNDRVEFVKKWREVLDSIPNLFIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V        I   +    +   +   +VL  GTFL G+++IGK KI  GRM +  S  
Sbjct: 121 DTVTSLIIRNGIAIGVKTILDVEFQARAIVLAVGTFLNGLLYIGKSKISGGRMSEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIEC 240
           +    ++  F   R+KTGTP R+DG++I +   E+Q  +     FS++   +   +Q+ C
Sbjct: 181 ITEQLVELGFKKSRMKTGTPVRIDGRSIDFSLMEEQKGEVDFHKFSYLDFIRRPMKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             + TN   H ++ + +  S +Y+G IK  GPRYCPSIE KIV F  +  H +FLEPEG+
Sbjct: 241 WTSHTNKACHGVLQDGLSESPLYNGKIKGIGPRYCPSIETKIVTFSYKEQHPLFLEPEGI 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT   Y NG S++LP  IQ   ++ IP      I RPGYAIEYD+ +P +L  +LETK I
Sbjct: 301 NTQEYYLNGFSSSLPIFIQLLALKKIPAFRNARIYRPGYAIEYDFFHPTQLNHSLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA AQGL+AGIN+    +       +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQINGTTGYEEAGAQGLIAGINAHINVHNEKSFILARNEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR DNAD RLT    ++G   + R     +  +  + +   ++ 
Sbjct: 421 DEPYRMFTSRAEYRILLRQDNADVRLTEKSYQIGLADKSRYNALVEKKKRIDNIIDFIRL 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FS------SL 531
             +  K ++S   +I            + L  P  +I  +  + P  R+           
Sbjct: 481 YSVDPKQVNSALEAIGTSPLRNKVKLTDLLLRPQLTINIISFLIPIVREQIDKISDCKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE ++I   Y  Y  R+ I A++I   E   I    DYS++ +LS E K+KL  + P  
Sbjct: 541 IIEAVEILIKYEGYIAREKIVAEKINRLENIKIRGRIDYSTVQSLSTEAKQKLISIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P  +N+LL+ +++
Sbjct: 601 IAQASRIPGVSPNDINVLLVLLRR 624


>gi|190571050|ref|YP_001975408.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019571|ref|ZP_03335377.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|238058369|sp|B3CLI3|MNMG_WOLPP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|190357322|emb|CAQ54751.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994993|gb|EEB55635.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 682

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/667 (45%), Positives = 397/667 (59%), Gaps = 63/667 (9%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA  AA+LGAST LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D
Sbjct: 13  HAGCEAATAAARLGASTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAID 72

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI- 133
            A I   VLN  +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E +  
Sbjct: 73  RASIHSVVLNGSRGAAVWGPRAQADRKLYKKAIQEIILNYNNLTVKEESVDDFLIESDSN 132

Query: 134 ----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
               I +++      I  S VVLTTGTFLRGVIHIG+   P+GR+GD P+  L N+  K+
Sbjct: 133 GESYIKAVITDSGERILTSRVVLTTGTFLRGVIHIGEQTTPSGRIGDKPAIELANTLKKY 192

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLET 249
           DF  GRL+TGTP RLD  TI W   ++Q  D    PFS++T+KI   Q+ C IT TN  T
Sbjct: 193 DFKLGRLRTGTPPRLDRGTINWSVLQEQVGDNPPTPFSYLTEKINQPQVSCFITHTNEHT 252

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           HR+I EN+  SA    D     PRYCPSIE K+ +F E+N HQIFLEPEG++ + +YPNG
Sbjct: 253 HRVIRENLHRSASSYLD-NVIAPRYCPSIETKVKKFAEKNNHQIFLEPEGIDDNTIYPNG 311

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           IS +LP E+Q++ I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQI
Sbjct: 312 ISNSLPIEVQYEMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQI 371

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           NGTTGYEEAA QG++AGIN+A   +        RTDSYIGVMIDDL +KG+ EPYR+FTS
Sbjct: 372 NGTTGYEEAAGQGIIAGINAALSLS-QKSFVLHRTDSYIGVMIDDLVTKGITEPYRLFTS 430

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS 489
           RAEYR+++R DNAD RLT  G  +  +   R       ++    L   L+SL +T + L 
Sbjct: 431 RAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQGKLKSIKQLEEKLESLTITPEQLR 490

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA------------------------ 525
           S  I    DG  +TA + L YP+     L  I P+                         
Sbjct: 491 SYGIKISYDGIRKTALDLLGYPNIDWNKLREIWPELNMGSSVSYLHNAKAPLPVIQVADT 550

Query: 526 --RKFSSLVIERLQIE------------------SSYAAY------------TGRQMIEA 553
             +  +   ++ +  E                  +    Y              RQ  + 
Sbjct: 551 GIQYLNDDGMDAVDTEKNVDSSVMCWNNTITDSIAKNEIYEAVAIEAKYKPYLVRQEADM 610

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           K ++ E    IP +F+YS +  LS E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y+
Sbjct: 611 KFLQEEVNTQIPTNFNYSQIKGLSTEVIEKLQSIKPATIGIAKQIQGITPAAIVSILVYL 670

Query: 614 KKNTVKL 620
           +    K+
Sbjct: 671 RNKKTKI 677


>gi|194880728|ref|XP_001974514.1| GG21052 [Drosophila erecta]
 gi|190657701|gb|EDV54914.1| GG21052 [Drosophila erecta]
          Length = 661

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/631 (43%), Positives = 408/631 (64%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E          + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTEARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--- 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKNSVDYSQLQRHEGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSPLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHGDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F +  +     
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTKKGYEFGLVSSDRYQHFQQTEERLQSA 507

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   +     +  +   +    +TA++ L  P  + +I+ L  I P+   +   
Sbjct: 508 IESLRQLRKHTHFWRQALDLPKAKASVEKTAFDMLGIPADNITIEQLIQIHPNELSWLKG 567

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
              + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL+++
Sbjct: 568 ERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKLTLI 627

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 628 QPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|255013155|ref|ZP_05285281.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_7]
          Length = 625

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGMLENMPNLSIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DMVQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 TTQEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R     +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAET 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S    +           ++ +  P  +++NL  + P  R +          
Sbjct: 481 YSVKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|332866945|ref|ZP_08437271.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013113]
 gi|332734326|gb|EGJ65453.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013113]
          Length = 557

 Score =  678 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/545 (44%), Positives = 334/545 (61%), Gaps = 6/545 (1%)

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           IQFR+LN +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q        E + +  +
Sbjct: 10  IQFRILNSRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDLIVEGDTVKGV 69

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V Q        TVVLTTGTFL GVIH+G  K   GR GD PS +L     +     GRLK
Sbjct: 70  VTQMGIRFDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLRELKLPVGRLK 129

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMEN 256
           TGTP R+D +++ +     Q  D      SFM D  +   Q+ C IT TN +TH II   
Sbjct: 130 TGTPPRIDARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTNEKTHDIIRGG 189

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +  S +Y+G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +YPNGIST+LP 
Sbjct: 190 LDRSPMYTGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELYPNGISTSLPF 249

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           ++Q + +R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ AGQINGTTGYE
Sbjct: 250 DVQFELVRSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFAGQINGTTGYE 309

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EA AQGL+AG+N+AR++ + +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ 
Sbjct: 310 EAGAQGLLAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRMFTSRAEYRLM 369

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST---SI 493
           LR DNAD RLT IG +LG + + R   + + ++      S L+ +     N        +
Sbjct: 370 LREDNADQRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVWAAPNNPMGKKFVEM 429

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEA 553
           +     K  +A + L  P+ +   +  +     + S  V E+++I   Y  Y  RQ  + 
Sbjct: 430 TGADLSKECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIAVKYEGYINRQHEDV 487

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            ++K  E+  IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TPAA+ L++I I
Sbjct: 488 AQLKRLEETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTPAAVQLVMITI 547

Query: 614 KKNTV 618
           +KN +
Sbjct: 548 RKNNM 552


>gi|319900537|ref|YP_004160265.1| glucose inhibited division protein A [Bacteroides helcogenes P
           36-108]
 gi|319415568|gb|ADV42679.1| glucose inhibited division protein A [Bacteroides helcogenes P
           36-108]
          Length = 624

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 368/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA +G+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANMGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDRTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V           +VLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 121 DTVREILVENGEVVGLVTFWGVTFHAKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K     GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q+ C
Sbjct: 181 LTESIAKHGITYGRMKTGTPVRIDGRSVHYELMDIQDGENDFHKFSFMNTGVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN ETH I+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEETHHILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLETKKI
Sbjct: 301 TTQELYLNGFSSSLPMDIQIAALKKIPAFKDLIIYRPGYAIEYDYFDPTQLKHTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R +   +  +  + + +  + 
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKEDRYELLRQKREAVSHIINFARD 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +I N+        R+          
Sbjct: 481 YSMKPTLINPILEQLGTTPLRQGCKLIDLINRPQITIDNMAVHVSALKRELDKVNDRKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL+ + P  
Sbjct: 541 IIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLTKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 601 IAQASRIPGISPSDVNVLLVLCGR 624


>gi|225848083|ref|YP_002728246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643777|gb|ACN98827.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 620

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/617 (45%), Positives = 375/617 (60%), Gaps = 22/617 (3%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAG EAA ++AKLGA TALIT   + IG M CNP+IGG+ KG +VRE+DAL G M +  D
Sbjct: 16  HAGIEAAIISAKLGAKTALITLDENKIGLMPCNPSIGGIAKGIVVREVDALGGEMAKAID 75

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-- 132
             GIQF+VLN +KGPAVR PR QAD+E YR  M  +  + ENL VI+ EV     + +  
Sbjct: 76  QTGIQFKVLNTRKGPAVRSPRAQADKEEYRKYMVEKTHNTENLTVIEDEVVDIVLKPHQN 135

Query: 133 IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFD 192
            +  ++      I+  +VV+TTGTFL G+IHIG  + PAGRM + PS+ L   + +  F+
Sbjct: 136 EVEGVITDKGLKIKTKSVVITTGTFLNGLIHIGDKRFPAGRMEEKPSSKLPEFYKRHGFE 195

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------TNRQIECGITRTN 246
             R KTGTPARLD  TI +   E+   D     FSF T+           QI C IT T 
Sbjct: 196 LARFKTGTPARLDKNTINFSILEEAPGDNPPPKFSFWTEPKGSYWFKEKDQIPCYITYTT 255

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            ETHRII EN+  +A+Y G I   GPRYCPSIEDKIV+F  ++ H ++LEPE  +   +Y
Sbjct: 256 PETHRIIRENLHRTALYGGAITGVGPRYCPSIEDKIVKFEGKDRHTVWLEPETRDGISIY 315

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNG+ST+LPEEIQ Q  R+IPGLE V +++P YAIEYD + P EL+PTLETKKI GL+ A
Sbjct: 316 PNGLSTSLPEEIQWQMYRSIPGLENVVLLKPAYAIEYDIVMPTELYPTLETKKIKGLYHA 375

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           G  NGTTGYEEAA QG+VAGIN+A ++    +     R + YIGVMIDDLT+KGV+EPYR
Sbjct: 376 GNFNGTTGYEEAAGQGIVAGINAALRALGKDEPFIIGRDEGYIGVMIDDLTTKGVIEPYR 435

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           +FTSR+EYR+ LR DNA  RL      +G + E   +   ++  E        K+  +  
Sbjct: 436 LFTSRSEYRLHLRQDNAILRLYQKAYNIGALTEEEYRFVKQHEDEIKNWIETYKNTYI-- 493

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                     K + K  + + FL  P+ SI NL     +    S  + E ++I   Y  Y
Sbjct: 494 ----------KDNDKKISVFTFLQKPEISIDNLKDYGIETPS-SDYIKEEVEINVKYDGY 542

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             R+    +++K+ +   IP+D DYS +  L+ E   KL+  KP  L  A+++EG+TPAA
Sbjct: 543 FERERKLNEKMKYLDSIKIPQDIDYSKVAGLTKEAVMKLTKAKPMTLGHAARLEGITPAA 602

Query: 606 LNLLLIYIKKNTVKLNE 622
           +  ++++I+K   K   
Sbjct: 603 ITAIMVHIEKMREKKKA 619


>gi|75075770|sp|Q4R4P6|MTO1_MACFA RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|67971174|dbj|BAE01929.1| unnamed protein product [Macaca fascicularis]
          Length = 692

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/641 (43%), Positives = 400/641 (62%), Gaps = 26/641 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLEMHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSVPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I++ N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTYTNPRVDEIVLNNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPTELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT  G K  GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADIRLTLRGYKDAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+  +S    +                A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFSSSKWKNLIPEVSISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDIDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
              +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAAMNE 673


>gi|237720610|ref|ZP_04551091.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_2_4]
 gi|229450361|gb|EEO56152.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_2_4]
          Length = 628

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 369/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C
Sbjct: 181 LTESIARHGISYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTHHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALEKIGTTPLRQGCKLIEILNRPQVTIKNIAEYVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|114778889|ref|ZP_01453686.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
 gi|114550858|gb|EAU53424.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
          Length = 624

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/611 (47%), Positives = 389/611 (63%), Gaps = 3/611 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +VIV+G GHAGCEAA  AA  GAS  LIT    TI  MSCNPAIGG+GKGHLV E+DAL 
Sbjct: 11  NVIVVGAGHAGCEAAWAAASRGASVRLITQNLDTIAKMSCNPAIGGIGKGHLVHEVDALG 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GLMG  AD + +Q+R+LN +KGPAV+  R Q DR  Y + M+  + S   + + QG ++ 
Sbjct: 71  GLMGVAADRSALQYRLLNSRKGPAVQATRAQCDRRTYHIVMRELLDSNPMIHLHQGSISE 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + + +S ++ +       S VVLTTGTFL GV ++G     AGR GD+  N L    
Sbjct: 131 LLFDGDRVSGVLDELGVRHEASAVVLTTGTFLGGVTYVGDKSSSAGRSGDAAVNGLTEEL 190

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            K +F  GRLKTGTP RLD KTI WD+ EKQ  D  + PFS + +++  RQ++C ITRT 
Sbjct: 191 YKREFKVGRLKTGTPPRLDKKTIRWDQLEKQPGDLNVRPFSVLHEEVVRRQLDCAITRTT 250

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II EN+  S +Y+G I   GPRYCPSIEDK+VRF ++  HQIFLEPEG + + VY
Sbjct: 251 EKTHDIIRENLSRSPMYTGLIDGVGPRYCPSIEDKVVRFSDKTSHQIFLEPEGWDHNEVY 310

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           PNGIST+LP ++Q  F+R+IPGLE VNIIRPGYA+EYDY++P EL P+LETK+++GLF A
Sbjct: 311 PNGISTSLPIDVQWAFMRSIPGLEGVNIIRPGYAVEYDYVDPTELRPSLETKRVAGLFHA 370

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ+NGTTGYEEAAAQG++AGIN+A  +  L      R+ +YIGVM+DDL SKGV+EPYRM
Sbjct: 371 GQLNGTTGYEEAAAQGVLAGINAASVALGLPAWVPDRSQAYIGVMVDDLVSKGVMEPYRM 430

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL-RSLLKSLVLTS 485
           FTSRAE+R+ LR DNAD RL P  + LG   E R+  F    Q  N L  +   + V   
Sbjct: 431 FTSRAEFRLHLREDNADLRLGPSSVTLGLYSEARRCSFQSRQQRVNDLFEAACATCVGIG 490

Query: 486 KNL--SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           +      +++     G++     +    D        +        +  +  L     Y 
Sbjct: 491 EAWRGRLSALGLPVPGQSMMLPAYCHRDDVDPAVAMQLLEGYEVLGAHDVASLGSLLHYH 550

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q+ + +  K  E + +P  FDYS +P LS E  ++LS ++P  L QAS++ G+TP
Sbjct: 551 GYLDKQLQDIERFKQMESQSLPDGFDYSIVPGLSIECAQRLSSVQPMTLGQASRLSGVTP 610

Query: 604 AALNLLLIYIK 614
           AA+  L+++++
Sbjct: 611 AAVTSLVMFLR 621


>gi|329960638|ref|ZP_08298981.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fluxus YIT 12057]
 gi|328532511|gb|EGF59305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fluxus YIT 12057]
          Length = 632

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/624 (41%), Positives = 365/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 9   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 69  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLSIWQ 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V           +VLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 129 DTVREILVENGEVIGLVTLWGVTFYSKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQ 188

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S        GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q+ C
Sbjct: 189 LTESIAAHGITYGRMKTGTPVRIDGRSVHYEYMDIQDGENDFHKFSFMDTGVRHLKQLPC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 249 WTCFTNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGE 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLETKKI
Sbjct: 309 TTQELYLNGFSSSLPLDIQIAALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLETKKI 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 369 KNLFFAGQINGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + + R +   +  +  N +    ++
Sbjct: 429 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKKERYELLTQKREAVNRIIDFARN 488

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS------SL 531
             +     N     +      +     + ++ P  +I+N+       + +          
Sbjct: 489 YSMKPTLINPVLEQLGTTPLRQGCKLIDLINRPQVTIENIAEHVKAFKQELDKISDRKEE 548

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ I A ++   E   I   FDY S+ +LS E ++KL  + P  
Sbjct: 549 IIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYESIQSLSTEARQKLVKIDPET 608

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 609 IAQASRIPGVSPSDINVLLVLCGR 632


>gi|150009552|ref|YP_001304295.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides distasonis ATCC 8503]
 gi|166222714|sp|A6LG59|MNMG_PARD8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|149937976|gb|ABR44673.1| glucose-inhibited division protein A [Parabacteroides distasonis
           ATCC 8503]
          Length = 625

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DMVQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 ATQEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R     +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAET 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S    +           ++ +  P  +++NL  + P  R +          
Sbjct: 481 YSVKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|114326675|ref|YP_743832.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Granulibacter bethesdensis CGDNIH1]
 gi|122328340|sp|Q0BW93|MNMG_GRABC RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|114314849|gb|ABI60909.1| putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
           subunit GidA [Granulibacter bethesdensis CGDNIH1]
          Length = 629

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 390/589 (66%), Gaps = 5/589 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+ +TIG MSCNPAIGG+GKGHLVREIDALDGLMGR  D A I F++LN  KGPAVR
Sbjct: 39  LVTHQAATIGEMSCNPAIGGIGKGHLVREIDALDGLMGRAIDQACIHFKMLNRSKGPAVR 98

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQDNSMIRCST 149
           GPR QADR+LY+ A+Q  + +  +L +I+G V    T    +  +  +++QD   +  S 
Sbjct: 99  GPRAQADRKLYKKAVQDILHTTPHLSIIEGSVEDLITSSGTQQTVQGVILQDGRHLSASA 158

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLTTGTFLRGVIH G+ +  AGR+G++PS  L       +   GRLKTGTP R+D ++I
Sbjct: 159 VVLTTGTFLRGVIHCGEQRSEAGRVGEAPSIGLAKRLDALNLRMGRLKTGTPPRIDRRSI 218

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            W+   +   +    PFS +   I   QI C I+ T  +TH+II +N+  SA+Y G +  
Sbjct: 219 AWEDLPEDRGENPPTPFSTLNHHIDLPQISCRISETTADTHQIIRDNLHRSAVYGGMLSG 278

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF ++  HQ+FLEPEGL+   VYPNGIST+LP E+Q   + ++PGL
Sbjct: 279 KGPRYCPSIEDKVVRFPDKTRHQVFLEPEGLDDFTVYPNGISTSLPAEVQEALLHSMPGL 338

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
               IIRPGYA+EYD+++P+ L P+LE K++ GLFLAGQINGTTGYEEA AQGL+AG+N+
Sbjct: 339 HNAVIIRPGYAVEYDFVDPRSLRPSLELKELPGLFLAGQINGTTGYEEAGAQGLMAGLNA 398

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           ARK+  LD +   R+ +YIGV+IDDLT+ GV EPYRMFTSR+E+R++LR DNAD RLT  
Sbjct: 399 ARKAQGLDSVTLDRSQAYIGVLIDDLTTHGVTEPYRMFTSRSEFRLTLRADNADRRLTRW 458

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL- 508
           G + GC+ + R K FA Y Q  N   +L      T   L    I+ +QDG+ R     + 
Sbjct: 459 GRQAGCVSDERWKTFAAYDQAMNDALTLAAQDTRTPVQLQQVGITVRQDGRRRPLLSLIG 518

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           S P+   Q L    P        V E+L+IE +Y+ Y  RQ  E + ++ E+  L+    
Sbjct: 519 SDPEQD-QKLNQAFPWLHDLDPRVREQLEIEGAYSGYLSRQDKERRVLQQEDTILLSDHI 577

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           DYS++  LS E+++KL  L+P +L  AS++EGMTPAAL  +  ++++  
Sbjct: 578 DYSAIGGLSAEIRDKLQSLRPTSLGAASRMEGMTPAALAAISHFVRRKQ 626


>gi|282856278|ref|ZP_06265559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pyramidobacter piscolens W5455]
 gi|282585855|gb|EFB91142.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Pyramidobacter piscolens W5455]
          Length = 630

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/613 (40%), Positives = 344/613 (56%), Gaps = 3/613 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             ++DVIV+GGGHAGCEAA  AA +GA T +I      +  M CNP+IGG  KGHLVREI
Sbjct: 6   ENTFDVIVVGGGHAGCEAALAAAHMGARTLMIVQDVDHVAHMPCNPSIGGPAKGHLVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            AL G+  R ADAA +  R LN  KGPAVR  R Q D   Y     RE+++  NL V Q 
Sbjct: 66  SALGGVQARAADAAAMMMRWLNTSKGPAVRALRAQCDLHDYHGYYLRELVNCPNLRVFQD 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E + +  +  +         V+LTTGT L G +H+G +   +G MG  P+  L
Sbjct: 126 QVDALWVENDRLKGVKTRFQLSFEAPRVILTTGTHLGGRVHVGLVNFASGPMGQQPAVGL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +      RLKTGT  RL   +I W   E Q  D   + F F  +K   R+I CG+
Sbjct: 186 SRSIAELGIVMQRLKTGTTPRLYRDSIDWSHIELQEGDPHPVGFDFWDEKKIRREISCGM 245

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            RTN  THRII +N+  S I  G+I   GPRYCPSIE K++ F E++ H IFLEP    +
Sbjct: 246 IRTNARTHRIIKDNLDRSPIVHGEITGVGPRYCPSIESKVMAFPEKDSHPIFLEPVARGS 305

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             +Y    ST+LP ++Q    RT+PG E+  I+RPGYAIEYD I+P++L  +LE K++ G
Sbjct: 306 VEIYVQNFSTSLPFDVQIAMTRTLPGCERAVILRPGYAIEYDAIDPQQLSLSLEMKRLPG 365

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGT+GYEEAA+QGL+AG+N+       + +   R ++Y+GV++DDL +KG  E
Sbjct: 366 LFCAGQINGTSGYEEAASQGLLAGVNAVLSMRGEEPLVLRRHEAYLGVLVDDLVTKGTHE 425

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSR E+R+ LR DNAD RL PIG +LG + + + ++  +  +  +     L+ + 
Sbjct: 426 PYRMLTSRCEHRLLLRHDNADRRLAPIGRRLGLLDDEKWRQLCERWEREDQEIETLERVH 485

Query: 483 L--TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +  T  N        +   +  +A E L  P+   + L  I PD R         ++   
Sbjct: 486 VAPTPANAVLAEEGLRPLERGMSAAELLRRPEVDYELLCRIVPDGR-LKGEEAANVETAV 544

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  RQ     ++   E   IP  FDY  L  L  E +EKL  ++P  L QA +I G
Sbjct: 545 KYQGYIARQQAAVDKMLRLESMKIPVGFDYGELRGLLAESREKLERVRPMTLGQAGRISG 604

Query: 601 MTPAALNLLLIYI 613
           +TP  L  L +Y+
Sbjct: 605 VTPTDLQHLALYL 617


>gi|228469898|ref|ZP_04054837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas uenonis 60-3]
 gi|228308533|gb|EEK17321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas uenonis 60-3]
          Length = 625

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VRE
Sbjct: 1   MTTHFDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G+++DAA IQ+R+LN  KGPA+  PR Q DR  +    + ++   + LD+ Q
Sbjct: 61  IDALGGYTGQLSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDRTDGLDLWQ 120

Query: 122 GEVAGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V             +V Q       + V++T GTFL G++H G+  IP GR+ +  S+
Sbjct: 121 DFVVDIKFGAADGKHLVVTQLGMTFTAAKVIVTAGTFLGGLMHFGRTMIPGGRISEPASH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            L    +       R+KTGTPAR+DG+++ W   E+Q  D+    FSF+   +   RQ  
Sbjct: 181 GLTECLVAAGHHADRMKTGTPARIDGRSVDWSLVEEQPGDDETGHFSFLPMQRKPLRQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLEPEG
Sbjct: 241 CYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y NG S++LP + Q + ++TIP L  V + RPGYAIEYD+ +P++L  TLE+K 
Sbjct: 301 EETNEYYLNGFSSSLPIDTQIRALQTIPALRHVQLYRPGYAIEYDFFDPRDLHHTLESKV 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +SGL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL +KG
Sbjct: 361 VSGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLILRRDEAYIGVLIDDLVTKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  Q    L  L  
Sbjct: 421 VDEPYRMFTSRAEYRILLRQDNADLRLTPYAERLGLATAERLSRLEQIKQRMAELEQLCA 480

Query: 480 SLVLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-------KFSS 530
           +  +  ++++   +S+              L  P  SI  L +   D            +
Sbjct: 481 NYSVKPESVNGYLSSLGENPLDFGTKLTTLLLRPHVSISGLIAHLNDFATQVASIIGDDT 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            V+ R +    Y  Y  R+   A+++   E   +   FDY  + AL  E +EKLS ++P 
Sbjct: 541 EVLTRTETSIKYQGYIEREEQAAQKLHRLESLTLGDKFDYQQISALPIEAREKLSRIRPA 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G++P+ +N+LL+ + +
Sbjct: 601 TIAQAARIPGISPSDINILLVLLGR 625


>gi|159900273|ref|YP_001546520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893312|gb|ABX06392.1| glucose inhibited division protein A [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 650

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/646 (39%), Positives = 362/646 (56%), Gaps = 28/646 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+N +YDV+V+GGGHAGCEAA  AA++G+ T L+T     +  MSCNP+IGG  KG+LVR
Sbjct: 1   MLNLTYDVVVVGGGHAGCEAALAAARMGSQTLLLTIDLDKLAHMSCNPSIGGPAKGNLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G MG + D   IQ R+LN  KGPAV+  R Q+D+ LY  AM+  + +Q NL + 
Sbjct: 61  EIDALGGAMGVITDRTLIQIRLLNETKGPAVQALRAQSDKRLYAKAMKEFLEAQPNLALK 120

Query: 121 QGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           Q  V       +        +  Q     R   +VLTTGTFLRG    G+  IPAGRMG+
Sbjct: 121 QAMVERIIPLADQADGARFAVETQTGWQYRAKALVLTTGTFLRGRAITGESIIPAGRMGE 180

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD----- 231
            P+ +L +   +  F   RLKTGTP R+D +TI +   E Q      + F F  D     
Sbjct: 181 QPAINLSSDLSQLGFPLVRLKTGTPPRIDARTIDFSGLEIQPGSSTPLYFGFNYDGQRPE 240

Query: 232 ----------------KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                                Q+ C    T  E H+ I +N+  + ++SG I+  GPRYC
Sbjct: 241 SLVHGPPNPIYPEPMLDGWQPQLPCYHIYTTPEFHQHIRDNLHRAPMFSGVIEGVGPRYC 300

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDKIVRF ++  H  FLEPEG  T  +Y  G +T+LPE++Q   +R+IP L KV I+
Sbjct: 301 PSIEDKIVRFADKESHGFFLEPEGWETLEIYVQGCNTSLPEDVQWAMLRSIPALRKVEIM 360

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           R GYAIEYD +   E+  +LE K++  LF AGQINGTTGYEEA AQGL+AGIN+A K  +
Sbjct: 361 RVGYAIEYDAVATGEITASLEAKRLPNLFFAGQINGTTGYEEAGAQGLMAGINAALKVAE 420

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
                  R  +YIGVMIDDL +K + EPYRMFTSRAE+R+ LR DNAD RLTP+  +LG 
Sbjct: 421 RAPFILRRDQAYIGVMIDDLVTKEIREPYRMFTSRAEHRLLLRGDNADLRLTPLAAELGL 480

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPD 512
           +   R  +  +     +     L+ L  T    ++    +   +   +  +  + L    
Sbjct: 481 VSAERAAQVERKQWAIDQASQQLRGLRYTPSAETNGRLQAAGIEPLLQPASGEDILRRVG 540

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
                L  + PD     + V E++++ + YA Y  ++    + ++  E R +P D D  +
Sbjct: 541 VKYAQLAEVQPDLPVVEADVAEQVELSAKYAVYIAKEQASVERVRKMEDRRLPADLDIEA 600

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P+L  E ++ L   +P  L QAS++ G+ PA +  LLI++++   
Sbjct: 601 IPSLRIEARQVLKRFRPATLGQASRLAGINPADIAHLLIHLERRER 646


>gi|332827805|gb|EGK00540.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Dysgonomonas gadei ATCC BAA-286]
          Length = 624

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/624 (41%), Positives = 365/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YDVIV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFKYDVIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  + L  +  I + +NL V Q
Sbjct: 61  IDALGGQMGIVTDTTAIQFRMLNKSKGPAMWSPRAQSDRAQFILKWRGIIENTDNLFVWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + +           +VVLT GTFL G++HIGK ++  GR+ +  S  
Sbjct: 121 DTVTSLIIENKTATGVKTAMGVNFSAKSVVLTNGTFLNGLMHIGKTQLGGGRVSEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIEC 240
           +     +F F T R+KTGTPAR+DG+++ +   E+Q  D+    FS++     T +Q+ C
Sbjct: 181 ITEQLREFGFTTDRMKTGTPARIDGRSVDFSLMEEQKGDDDFHKFSYLDFAPRTLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN E H  + + +  S +Y+G IKS GPRYCPSIE K+V F E+  HQ+FLEPEG 
Sbjct: 241 WITYTNEEVHSTLRDRLDDSPLYNGQIKSIGPRYCPSIETKVVTFAEKTSHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T   Y NG S++LP   Q + ++ IP    ++I RPGYAIEYD+ +P +L  TLETK I
Sbjct: 301 STQEYYLNGFSSSLPLHTQIEALQRIPAFRNIHIYRPGYAIEYDFFDPTQLKHTLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGL+AGIN+  K+   D     R ++YIGV+IDDL +KGV
Sbjct: 361 DNLFFAGQINGTTGYEEAGGQGLIAGINAHIKTQGGDEFILKRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT  G  +G     R     +  +E N +     +
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADARLTEKGYNMGLAKRERIDLLNQKKEEMNRIIDFTAN 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS---SL 531
             L  + ++     +            + ++ P  SI ++  + P    +  K       
Sbjct: 481 YSLKPEYINEGLEKLGTSPLKHGLKLKDIITRPQVSIDSIAELVPAFKAELDKIPNRKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + E  +I   Y  Y  R+ + A +I   E   I   F+Y ++ +LS E ++KL+ + P  
Sbjct: 541 IKEACEIIIKYDGYIKREQLIADKISRLENIQIKGKFNYEAILSLSTEARQKLAKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P  +++LL+ + +
Sbjct: 601 IAQASRIPGVSPNDISILLVILGR 624


>gi|160888678|ref|ZP_02069681.1| hypothetical protein BACUNI_01095 [Bacteroides uniformis ATCC 8492]
 gi|317478017|ref|ZP_07937199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_1_36]
 gi|156861992|gb|EDO55423.1| hypothetical protein BACUNI_01095 [Bacteroides uniformis ATCC 8492]
 gi|316905806|gb|EFV27578.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 4_1_36]
          Length = 624

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/624 (42%), Positives = 364/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   I+ +V           VVLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 121 DTVQEILVENGEITGVVTLWGVTFHAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K     GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C
Sbjct: 181 LTESIAKHGITFGRMKTGTPVRIDGRSVHYEDMEIQDGECDFHKFSFMDTHVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHRILQEGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP  IQ   ++ IP    + I RPGYAIEYD+ +P +L  TLETK I
Sbjct: 301 TTQELYLNGFSSSLPMNIQIAALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKNI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIMAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R K   +  +  N +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLAKEERYKLLTEKREAVNRIIDFARN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +I+N+        R+          
Sbjct: 481 YSMKPALINPVLEQLGTTPLRQGCKLIDLINRPQITIENIAEHVSAFKRELDKISDRKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  + P  
Sbjct: 541 IVEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLMKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 601 IAQASRIPGVSPSDINVLLVLCGR 624


>gi|160883398|ref|ZP_02064401.1| hypothetical protein BACOVA_01367 [Bacteroides ovatus ATCC 8483]
 gi|260172652|ref|ZP_05759064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
 gi|315920943|ref|ZP_07917183.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
 gi|156111118|gb|EDO12863.1| hypothetical protein BACOVA_01367 [Bacteroides ovatus ATCC 8483]
 gi|313694818|gb|EFS31653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D2]
          Length = 628

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 369/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++H+G+ K+P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHKLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM T     +Q++C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDARSVHFDQMETQDGESDFHKFSFMNTSTRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVRGKKEAVEQIISFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALERIGTTPLRQGCKLIEILNRPQVTIENIAEYVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|262383154|ref|ZP_06076291.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_33B]
 gi|301311746|ref|ZP_07217671.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 20_3]
 gi|262296032|gb|EEY83963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_33B]
 gi|300830306|gb|EFK60951.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 20_3]
          Length = 625

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DMVQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLISLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNETCHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 TTQEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R     +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAET 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S    +           ++ +  P  +++NL  + P  R +          
Sbjct: 481 YSVKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|255945871|ref|XP_002563703.1| Pc20g12180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588438|emb|CAP86547.1| Pc20g12180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 688

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/642 (43%), Positives = 387/642 (60%), Gaps = 23/642 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDV+VIGGGHAG EA A AA+ GA TAL+T     IG  SCNP+ GG+GKG ++RE+
Sbjct: 34  TRPYDVVVIGGGHAGSEACAAAARSGARTALVTPSLENIGVCSCNPSFGGIGKGTMIREV 93

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AG+ FRVLN  KGPAV GPR Q DR+LY+  M  E+   ENL++++G
Sbjct: 94  DAMDGVAGRIIDKAGVMFRVLNRSKGPAVWGPRAQIDRDLYKRYMSEELAGTENLNIVEG 153

Query: 123 EVAGFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA               +  I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 154 KVADIVLSTEGIENTPGAQGKIVGVRLESGEVISTGRVVITTGTFLGGEIHIGMDVFPSG 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++P+  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 214 RMGEAPTYGLSKSLREAGFQLGRLKTGTPPRLDKKTIDFSALEVQKGDSPPHPFSYLNKT 273

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN   H II  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 274 VDVGDEGQLTCWMTHTNEAAHEIIRANLDKSIHIRETV--RGPRYCPSLESKIIRFKDKT 331

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG    DV+YPNGIS  +P + Q+  +R + GLE V +++PGY +EYDYI+P
Sbjct: 332 QHQIWLEPEGFAPNDVIYPNGISMTVPADAQYAMLRVVRGLENVTMLQPGYGVEYDYIDP 391

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG+VAG N+  +S     +  +R+D +I
Sbjct: 392 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIVAGTNAGLESQNRSPLTLTRSDGFI 451

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R   F+   
Sbjct: 452 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARDAGVVSDKRWSHFSDTE 511

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            +   L++LL +  L+S   S      + D   R+A + L      I  L          
Sbjct: 512 AQIQELQTLLGNTKLSSSAWSRKGFKVRSDTSIRSALDILCLDGTDINTLIPTIESPTGT 571

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  ++ R+ IE  YA Y  RQ   A+  + +E  L+P D DYS +  +SNE +
Sbjct: 572 AYTPASFAPEILTRVAIEGRYAPYLKRQEKMAERFQQDENLLLPADLDYSMVHGISNEER 631

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           + L  ++P ++  A +IEG+TP     LL++++K +    E+
Sbjct: 632 QVLQRVRPVSVGMAKRIEGVTPVGALRLLMHVRKGSGFTKEM 673


>gi|15828724|ref|NP_326084.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pulmonis UAB CTIP]
 gi|21263679|sp|Q98QV8|MNMG_MYCPU RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|14089666|emb|CAC13426.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Mycoplasma pulmonis]
          Length = 611

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 361/619 (58%), Gaps = 11/619 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI +++DVIVIGGGHAG EA    AK+    ALIT     IG+M CNP+IGG  KG + +
Sbjct: 1   MIRKNFDVIVIGGGHAGVEATFALAKMNLKVALITIYKDKIGAMPCNPSIGGPAKGIITK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+ G  AD A IQ ++LN  KGP+VR  R Q D+E Y   + +++L  EN+ + 
Sbjct: 61  EIDALGGVQGYYADKAMIQVKMLNESKGPSVRAIRAQIDKEKYSEIIVKDLLQNENVTIF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +        E + I  + ++ N  I  + VV+TTGT++   I  G      G  G+    
Sbjct: 121 EDFATDLIVENDQIVGVELEKNKTISSNLVVMTTGTYMNSRILRGSDIEHTGPNGEKTGI 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +  F+  RLKTGTP R+   +I + K E++  D     FS  ++   ++QI C
Sbjct: 181 GLSKALERLGFELIRLKTGTPPRIYSDSIDFSKVEEEVLDVNGYVFSPRSNVKIDKQIHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH+II +NI  SA+YS  I+  GPRYCPS+EDKI++F ++  HQIF EPE  
Sbjct: 241 YLTYTNEKTHKIIQDNINKSAMYSQLIEGTGPRYCPSVEDKIMKFADKERHQIFFEPETS 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D++Y NG+ST+ P E+Q Q ++TIPGLE   +   GYAIEYD INP +L  +LE+KKI
Sbjct: 301 RQDIMYINGLSTSFPVEVQKQIVKTIPGLENARVKIWGYAIEYDAINPLQLKKSLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLFLAGQINGT+GYEEAAAQGL+AGIN+  K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 KGLFLAGQINGTSGYEEAAAQGLIAGINAGLKFKGEDEIVIQRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DN D RL   G+K   I ++  ++  +  ++ +     LK+
Sbjct: 421 QEPYRMLTSRAEYRLLLRNDNVDIRLAHYGLKAHLISQQDYQKILEKYKKIDEKIEELKT 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             ++SK   +     +      + ++ L+ PD    +L        + +        I+ 
Sbjct: 481 KFVSSKTDFAQKYKIENG---ISYFQALTRPDIEPSDLIKDFEFLNEMT--------IQI 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q   A +++  E   IP+  DYS +  L+NE +EK + ++P  + QAS+I G
Sbjct: 530 RLEGYIKKQNNAAAKMERLENLKIPEKIDYSQILNLANEAREKFNKIRPQTIGQASRISG 589

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA + +LL Y+     K
Sbjct: 590 INPADIQMLLFYLDLKKSK 608


>gi|195952805|ref|YP_002121095.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932417|gb|ACG57117.1| glucose inhibited division protein A [Hydrogenobaculum sp. Y04AAS1]
          Length = 610

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/616 (43%), Positives = 372/616 (60%), Gaps = 18/616 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G GHAG EAA  A+KL  S  L T     IG MSCNPAIGG+ K  +VREID 
Sbjct: 2   KFDVVVVGAGHAGIEAAIAASKLCDSVGLFTINIDNIGQMSCNPAIGGIAKSIVVREIDI 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M +  DA GIQF++LN +KG AV  PR QAD+  Y+  M++ +++  NL ++Q EV
Sbjct: 62  LGGEMAKAIDATGIQFKMLNRRKGEAVWAPRAQADKLKYKEYMKKALMNIPNLYLVQDEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +  +     +C  VV+TTGTFL G I IG    P GR  + PS +L  
Sbjct: 122 IDILVKDNEVIGVKTKLGIEYQCKAVVVTTGTFLNGKIFIGDKVFPGGRAWEPPSTTLDE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-------ITNRQ 237
            + +F F   R KTGTPARLD +TI +D+ E    DE    FS  +D           +Q
Sbjct: 182 FYKRFGFTLKRFKTGTPARLDKRTINFDELEPAPGDEPAPKFSLFSDPRGSYWFEPNKKQ 241

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C IT TN +TH II +N+  +A+Y G IK  GPRYCPSIEDK+V+F  +  HQIFLEP
Sbjct: 242 INCYITYTNPKTHEIIRKNLHRTALYGGLIKGVGPRYCPSIEDKVVKFESKAQHQIFLEP 301

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +T  +YPNG+ST+LPE+IQ +  RTI GLE V +IRP YAIEYD ++P EL+PTLET
Sbjct: 302 EGEDTIEIYPNGLSTSLPEDIQQEMYRTIKGLENVVLIRPAYAIEYDIVDPLELYPTLET 361

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KKI+GLF AG  NGTTGYEEAA QG++AGIN+  ++N  + I   R+ SYIG+M +DL +
Sbjct: 362 KKINGLFHAGNFNGTTGYEEAAGQGILAGINAGLRANNKEPIILPRSISYIGLMAEDLAT 421

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K ++EPYR+FTSR+EYR+S+R DNA  RL  +   LG + E   K   + +   N+    
Sbjct: 422 KEIVEPYRLFTSRSEYRLSVRQDNAPERLLELSHNLGLLNEEDYKLAKELLNGINYYVDY 481

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
            KS          T I+  ++ K  T  + ++        L     D  + +  + +  +
Sbjct: 482 YKS--------QKTVINLGENPKPYTLSQIIAIEGID--KLKEFGFDVPQ-NPYIKDETE 530

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I   Y  Y  ++    +++K  E   +P D DY ++  L+ E  EKL  LKP  + QA  
Sbjct: 531 IILKYEYYIEKEKKLNEKLKMFEHIKLPPDMDYENVKGLTKEAIEKLKKLKPATIAQAKN 590

Query: 598 IEGMTPAALNLLLIYI 613
           I+G+TPA+++ +LI++
Sbjct: 591 IDGITPASISAILIHM 606


>gi|298373957|ref|ZP_06983915.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_19]
 gi|298268325|gb|EFI09980.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 3_1_19]
          Length = 625

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMPNLSIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DMVQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLVSLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 ATQEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R     +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSHQMGLAKQDRYDLLREKKESRDAIIRFAET 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S    +           ++ +  P  +++NL  + P  R +          
Sbjct: 481 YSVKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|298484266|ref|ZP_07002430.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D22]
 gi|298269591|gb|EFI11188.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D22]
          Length = 628

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/624 (41%), Positives = 369/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM     + +Q++C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDARSVHFDQMETQAGECDFHKFSFMNTSTHHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGLVAGIN+    +  +    +R ++Y GV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLVAGINAHINCHGGEAFTLARDEAYTGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   + R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKKDRYQLVRSKKEAVEQIVSFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALEKIGTTPLRQGCKLIEILNRPQVTIENIIEHVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL+ +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLAKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|258648858|ref|ZP_05736327.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella tannerae ATCC 51259]
 gi|260850878|gb|EEX70747.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella tannerae ATCC 51259]
          Length = 625

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/615 (42%), Positives = 367/615 (59%), Gaps = 9/615 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG GHAGCEAA  AA +GA+T LIT   + I  MSCNPAIGG+ KG +VREIDA
Sbjct: 6   SYDVLVIGAGHAGCEAAYAAATMGANTCLITIDMNKIAQMSCNPAIGGIAKGQIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG + D A IQFR+LN  KGPA+  PR Q DR  Y LAM+  +    NL + Q EV
Sbjct: 66  LGGLMGEITDLATIQFRILNRSKGPAMWSPRAQCDRMQYSLAMRERLEQTPNLHIWQDEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +    + + +   V++T GTFL G++HIG+  +  GR  +  +  L +
Sbjct: 126 TELLVEHERVVGVRTIWDIVFQAKAVIITAGTFLNGLMHIGRKMVEGGRCAEPAAKFLTD 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S  K      R+KTGTP R+D +++  D+ E +  +     FS++  +   +Q+ C    
Sbjct: 186 SIAKNGISYARMKTGTPVRIDARSVHLDEMEIEPGEMDFHRFSYIGTERKLKQMVCWTCY 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN E H ++ + +  S +Y+G I S GPRYCPSIE K+V F +R  H +FLEPEG +T+ 
Sbjct: 246 TNPEVHAVLEKALPDSPLYNGQIDSIGPRYCPSIETKLVTFPDREQHPLFLEPEGTSTNE 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG S++LP   Q + +R IP    V + RPGYAIEYD+ +P +L  TLE+K I+GLF
Sbjct: 306 LYLNGFSSSLPLHAQLEALRKIPCFRDVALFRPGYAIEYDFFDPTQLKHTLESKVINGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGTTGYEEAA QGLVAGIN+    +        R ++YIGV+IDDL +KGV EPY
Sbjct: 366 LAGQVNGTTGYEEAAGQGLVAGINAVLLLSGRPAFTLRRDEAYIGVLIDDLVTKGVDEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYRI LR DNAD RLTP  ++ G     R  RF     +   + +  +   + 
Sbjct: 426 RMFTSRAEYRILLRQDNADIRLTPYAIQFGLASSERIHRFESKKAQLENIITTAQYTSIK 485

Query: 485 SKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIER------ 535
             N+++    I      +   AY+ ++ P+ ++  L    P   K   ++  +R      
Sbjct: 486 PDNINTYLEEIGSTLLRRGCKAYDLVTRPEITLSELAKHTPALSKTLDAVSSDREETIEA 545

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
            +IE  Y+ Y  R+   A +I+  E   I   FDYS+L  LS E ++KLS + P  L QA
Sbjct: 546 AEIEIKYSGYIARERQLADKIQRLENIKIRGVFDYSTLHQLSTEARQKLSKIDPETLAQA 605

Query: 596 SKIEGMTPAALNLLL 610
           S+I G++P+ +++LL
Sbjct: 606 SRIPGISPSDISVLL 620


>gi|39938754|ref|NP_950520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Onion yellows phytoplasma OY-M]
 gi|81170563|sp|Q6YQV5|MNMG_ONYPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|39721863|dbj|BAD04353.1| glucose inhibited division protein A [Onion yellows phytoplasma
           OY-M]
          Length = 617

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/616 (40%), Positives = 365/616 (59%), Gaps = 6/616 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG EAA + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDSIVIGAGHAGVEAALILAKK-HNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M + AD A IQ ++LN  KGPAVR  R Q D+  Y   +   +    NL +++G V 
Sbjct: 62  GGVMAKAADLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIIFEILQKTLNLTLLEGLVN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N +  + + D + I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 122 NLVIQNNQVQGVCLIDGTKINAKTVIITTGTYLASQILIGDTKKSSGPNGVPTTYGISTQ 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +  F+  RLKTGTP R+   +I + +T+ Q  D     FSF+       Q  C +T T
Sbjct: 182 LKELGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQIFSFVPQTNQRPQEPCFLTHT 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L+ D +
Sbjct: 242 NQTTHQVIQKHLNQSAMYGGYVEGTGPRYCPSIEDKVVRFCDKNSHQIFIEPESLSLDEM 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LFL
Sbjct: 302 YLQGLSTSMPQHVQHEILKTIPGLQNAQITKYAYAIEYDAFNPNQLKHSLETKKIQNLFL 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPYR
Sbjct: 362 AGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS--LVL 483
           + TSRAE+R+ LR DNAD RL   G +LG I E+    F     + N L    K+  +++
Sbjct: 422 LLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDEKDYNNFQNKKAKINLLLEKSKNYEILV 481

Query: 484 TSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
            S NLS          G+  T  + L  P+ +   L     +  K    + E+++I+  Y
Sbjct: 482 NSDNLSYLKQQKSASLGEKTTLAQLLKRPELNFCTLQHFLQE--KADKTIYEQVEIQIKY 539

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +   EA+++   E++ IP   +Y+ +  LS E +EKL ++KP  L QA++I G+ 
Sbjct: 540 EGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAQEKLDLIKPQTLGQATRILGVN 599

Query: 603 PAALNLLLIYIKKNTV 618
              +++LL+Y++K+  
Sbjct: 600 QVDISILLVYLEKHHA 615


>gi|156742847|ref|YP_001432976.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Roseiflexus castenholzii DSM 13941]
 gi|205375711|sp|A7NN26|MNMG_ROSCS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|156234175|gb|ABU58958.1| glucose inhibited division protein A [Roseiflexus castenholzii DSM
           13941]
          Length = 676

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/659 (38%), Positives = 366/659 (55%), Gaps = 46/659 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+IV+G GHAGCEAA  AA++G  T L+T     +  MSCNP+IGG  KGHLVREIDAL
Sbjct: 9   YDLIVVGAGHAGCEAAHAAARMGCRTLLLTIDLDKLAHMSCNPSIGGPAKGHLVREIDAL 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGRV D   IQ R+LN  KGPAV+ PR QAD+ LY   M+  + +  NLD+ Q  + 
Sbjct: 69  GGLMGRVTDRTFIQIRLLNESKGPAVQAPRAQADKRLYAKVMKETLETTPNLDLRQAMIE 128

Query: 126 GFN--------------TEKNIIS----SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                             +   +     +++     + +   +VLTTGTFLRG    G+ 
Sbjct: 129 RILLPQPPGRNGSAAPADDPAGVQPGHYAVITHTRRVYQSRALVLTTGTFLRGRAITGEA 188

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              AGR G++P+ +L        F   RLKTGTP R+D +TI + +T  Q      + F 
Sbjct: 189 IWGAGRAGEAPATALGEDLAALGFPLVRLKTGTPPRIDARTIDFSQTSVQQGSPTPLFFG 248

Query: 228 FMTD------------------------KITNRQIECGITRTNLETHRIIMENIKHSAIY 263
                                            Q+ C +  T  E H I+  N+  + ++
Sbjct: 249 HYYRVLGEIPPEPAFTGAPACAYPEPLRAAWRPQLPCYLVHTTPEFHEIVRRNLDRAPLF 308

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
           SG I+  GPRYCPSIEDKIVRF ++  H +FLEPEG +T  VY  G +T+LPE++Q   +
Sbjct: 309 SGIIEGVGPRYCPSIEDKIVRFADKERHGLFLEPEGWSTHEVYVQGCNTSLPEDVQWAML 368

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           R+IP L +V ++R GYAIEYD +   E+   + +++I GLF AGQINGTTGYEEAAAQGL
Sbjct: 369 RSIPALRRVELMRAGYAIEYDALATGEIAADMSSRRIPGLFFAGQINGTTGYEEAAAQGL 428

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AGIN+AR       I   R ++YIGV+IDDL +K + EPYRMFTSRAE+R+ LR DNAD
Sbjct: 429 MAGINAARFIQGKPPIILRRDEAYIGVLIDDLITKEIREPYRMFTSRAEHRLLLRTDNAD 488

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS---FKQDGK 500
            RLT +  +LG +   R +   +  +E   L  +L+   L     ++  +S         
Sbjct: 489 LRLTRLAGELGLVDRERVEAVERKREESERLLRVLRGQRLFPSAATNARLSDVGIAPLSS 548

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             +A + L  P+   + L     D     + + E+++IE+ Y  Y  +Q  E + ++  E
Sbjct: 549 EMSAEDVLRRPEVRYEQLRQAL-DLPACDADIAEQVEIEAKYGGYLQKQQREVERLRRME 607

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            R IP DFD+++L  L NE ++ L   +P  + QA+++ G+ PA + +L++ +++   +
Sbjct: 608 ARRIPPDFDFTALRGLRNEARQTLQRFRPATVGQAARLAGINPADVAILIVALERRGRR 666


>gi|325473283|gb|EGC76478.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema denticola F0402]
          Length = 628

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/625 (42%), Positives = 382/625 (61%), Gaps = 18/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  +A++G +  LIT    + G +SCNP+IGG+ KG++VREIDA
Sbjct: 6   DYDVIVVGAGHAGIEAALASARMGEAVLLITQTLDSAGRLSCNPSIGGISKGNIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG++ADA+ IQ+R+LN  +GPAV+ PR QAD+ LY    +  I  ++NL V Q  V
Sbjct: 66  LGGEMGKLADASMIQYRLLNKSRGPAVQAPRVQADKFLYSQLAKHAIELEKNLHVFQDTV 125

Query: 125 AGF---------NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                       + EK  +  +  +         VVL TGTF+ G I+IG+ + P GR+G
Sbjct: 126 IDIVSSNTNESGHVEKGSVQYVKTERGREFSAKAVVLATGTFMEGKIYIGEYESPDGRLG 185

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  K  F  GRLKTGTP R+  ++     TE+Q ADE + PFSF   +I  
Sbjct: 186 ERAAIGLGPALAKKGFTVGRLKTGTPMRILRRSFDSSLTEEQEADEIMRPFSFTNAEIHR 245

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
              +C IT TN ETH II EN+  +A++SG I   G RYCPSIEDKI +F ER+ H +++
Sbjct: 246 PYAKCYITHTNQETHDIIRENLHRAALFSGKITGTGARYCPSIEDKIKKFPERDRHHVYI 305

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGLNT+ +Y NG+S++LPE++Q + IRTIP  + V I RP YA++Y Y++P +L   L
Sbjct: 306 EPEGLNTEELYINGLSSSLPEDVQDRMIRTIPCFKDVIITRPAYAVDYAYVSPIQLSSDL 365

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-------KSNKLDCICFSRTDSYI 408
           +T++I GLFLAGQINGT+GYEEA  QG++AGIN+A        K  K       R ++YI
Sbjct: 366 QTRRIEGLFLAGQINGTSGYEEAGGQGIIAGINAALFSRSLKFKDEKYIPFVLKRDEAYI 425

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GVMIDDL ++GV EPYRMFT+RAEYR++LR D AD RLT    ++G   +    R  + +
Sbjct: 426 GVMIDDLVTQGVDEPYRMFTARAEYRLNLRHDTADERLTERAYQIGLQTKEASDRLKEKL 485

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
                + SL K + +T   ++         GK  +  + L  P  S++ + SI  +++ +
Sbjct: 486 LTRERIISLWKDIKITRDLIAKNPELKNHIGK--SLADALHDPQVSLECICSIDENSKDY 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S+ ++E  ++E  Y  Y   Q  +  ++K  E   IP DFDY ++  LS E + +L  ++
Sbjct: 544 SAELLESAELEIRYEHYIAVQNRKIAKVKRMENTKIPADFDYDAVSGLSTESRARLKEVR 603

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P  + QAS+I G+ P+ + LL I +
Sbjct: 604 PETIGQASRIRGIRPSDIMLLSILL 628


>gi|66805185|ref|XP_636325.1| hypothetical protein DDB_G0289183 [Dictyostelium discoideum AX4]
 gi|60464699|gb|EAL62825.1| hypothetical protein DDB_G0289183 [Dictyostelium discoideum AX4]
          Length = 778

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/637 (46%), Positives = 399/637 (62%), Gaps = 26/637 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIVIGGGHAG EA+A +A++G+ T LIT    TIG MSCNP+IGG+GKG+LVREID
Sbjct: 108 KEFDVIVIGGGHAGTEASAASARVGSKTLLITQSIDTIGVMSCNPSIGGVGKGNLVREID 167

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-----LSQENLD 118
           A+ G+MG  AD +G QF+VLN  KG AV GPR Q DRELYR ++   +      +  NL 
Sbjct: 168 AIGGIMGLAADESGCQFKVLNQSKGSAVHGPRAQIDRELYRESIHNLLWKITQDNGGNLS 227

Query: 119 VIQGEVAGFNTE-------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           + +G V     +             K  I  I++ +  +I+C  VV+TTGTFL G+IHIG
Sbjct: 228 IKEGMVEDIILDEEEGGEEGDNGKNKKTIKGIILDNGEIIKCKKVVITTGTFLGGIIHIG 287

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +IP+GRMGD  + +L  +  +  F+ GRLKTGTP RLDGK+I +    +Q  DE  +P
Sbjct: 288 NKRIPSGRMGDKAATALSLTLNRIGFELGRLKTGTPPRLDGKSIDYSVMVEQVGDEIPLP 347

Query: 226 FSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSA--IYSGDIKSYGPRYCPSIEDK 281
           FSF   K+ N  RQ++C +TRT  E+H+II++N+          D K  GPRYCPSIE K
Sbjct: 348 FSFSNSKVKNDQRQLKCFMTRTTEESHQIIIDNLSSRPALESGEDGKGLGPRYCPSIETK 407

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQ+++EPEG  TDV+YPNGIS +LPE++Q +F++TIPGLE V +++PGYA+
Sbjct: 408 IERFQGKT-HQVWIEPEGYTTDVIYPNGISISLPEDVQMKFLKTIPGLENVKMLKPGYAV 466

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDYI+P+EL  TLETKKISGLFLAGQINGTTGYEEA AQG+VAGIN++        +  
Sbjct: 467 EYDYIDPRELNHTLETKKISGLFLAGQINGTTGYEEAGAQGIVAGINASLSHQNRPPMII 526

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
           SR++ YIGV+IDDL + GV EPYRMFTSR+EYRISLR  N+D RLT    + G     + 
Sbjct: 527 SRSEGYIGVLIDDLVTLGVTEPYRMFTSRSEYRISLRAHNSDQRLTEKAFEFGSASNHQL 586

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +   +     + + S LK +  +      T    +   + ++ +E L  P      +   
Sbjct: 587 QALKEKQSLLDQVYSKLKEIKKSPSEYL-TQCGIENVHEKKSLFEILRRPHVDFNLIKRY 645

Query: 522 CPD--ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE 579
            P     K   L I  +  E  Y+ Y  + +IE   ++  E +LIP   +Y  +  LS E
Sbjct: 646 LPTDLLEKIPPLYISIIDSECKYSNYVDKHVIEFNNLRKRENQLIPPSLNYWDISQLSTE 705

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            K+ LS  +P N   ASKI G+TP+AL  + +YIKKN
Sbjct: 706 SKQILSKARPTNFSSASKISGITPSALFSIQVYIKKN 742


>gi|260495367|ref|ZP_05815494.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
 gi|260197145|gb|EEW94665.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_33]
          Length = 625

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/626 (37%), Positives = 357/626 (57%), Gaps = 14/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             +  I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNSSYEKKVIGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S         R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRDLGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E ++ S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KERNNTVPTWLTYTSEKTIEVIKEMMRFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEIGIVDKDKIEFLEKAINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    S    ++  K   A E L   D S  +L +   +   +
Sbjct: 481 YMEINNLKNISVSMNEANKFLESLDIEERFVKGVKASEILKIKDISYDDLKTFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P ++ +A++I G+T   + L++ Y+K
Sbjct: 600 PLSVGEATRISGVTSNDITLIIAYMK 625


>gi|289620137|emb|CBI53581.1| unnamed protein product [Sordaria macrospora]
          Length = 717

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/630 (45%), Positives = 394/630 (62%), Gaps = 14/630 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPFDVVVIGGGHAGSEACAAAARAGARTALVTPSVENLGVCSCNPSFGGIGKGIMIREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL+GL GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ E+ S  NL ++   
Sbjct: 100 ALEGLAGRIIDKAGVQFRVLNSKKGPAVWGPRAQIDRALYKKHMRAELESYPNLSLVYNS 159

Query: 124 VAGFNTE---------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+              K  I+ + ++   ++  S V++TTGTFL G IHIG    P+GRM
Sbjct: 160 VSDIVVSENDDPSTGAKTKITGVRLESGEVLPTSQVIITTGTFLGGEIHIGMEAYPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  S  +  F  GRLKTGTP RLD K+I +   E+Q+ D+   PFS++ D +T
Sbjct: 220 GEKATFGLSKSLREAGFKLGRLKTGTPPRLDKKSINFGVLEEQYGDDPPRPFSYLNDAVT 279

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C  T TN  TH I+ +N+  +      +K  GPRYCPS+E KI+RF ++  H +
Sbjct: 280 VKDQLHCWATYTNHATHEIVRQNLDKTIHIRETVK--GPRYCPSLEAKIIRFSDKQRHLV 337

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG + D++YPNG+S  +P E Q   +RTIPGLE V + +PGY +EYDY++P+ L  
Sbjct: 338 WLEPEGFDNDIIYPNGLSMTVPAEAQLALLRTIPGLEDVIMTQPGYGVEYDYVDPRSLKR 397

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I GL+LAGQINGTTGYEEAA QG+VAGIN+ R +   + +  SR D YIGVMID
Sbjct: 398 TLETKAIRGLWLAGQINGTTGYEEAAGQGIVAGINAGRAAIGREPVTLSRADGYIGVMID 457

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+E+R++ R DNAD+RLT +G   G +G+RR   F     +   
Sbjct: 458 DLITKGVSEPYRMFTSRSEFRMTTRSDNADSRLTALGRSWGVVGDRRWSHFQTENGQMAE 517

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDARKFSSL 531
           LR +L   +L+ +  ++     K D + R+A+E L +   S++ L    + P    FS  
Sbjct: 518 LRRILSETILSPQAWANAGFDVKADTRKRSAFELLCFKGVSMEKLHESGVVPKLMDFSER 577

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V ER  IE  YA    +  +E  +++ EE   +P D DY ++  LS   K  L   +P +
Sbjct: 578 VRERTFIEGLYAPQIDKHALERAKLEREEDLRLPLDLDYDAIINLSLAEKGVLKATRPES 637

Query: 592 LLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           L QA +IEGMTPA    LL ++K+   +L 
Sbjct: 638 LAQARRIEGMTPAGCMRLLAHVKRRNGELK 667


>gi|195382695|ref|XP_002050065.1| GJ21932 [Drosophila virilis]
 gi|194144862|gb|EDW61258.1| GJ21932 [Drosophila virilis]
          Length = 659

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/629 (43%), Positives = 402/629 (63%), Gaps = 22/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 27  YDVVVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ +  NL +    V 
Sbjct: 87  DGVCARCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQQELFNTPNLQIRAAAVD 146

Query: 126 GFNTE-------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               +           + +++ D  ++   TVVLTTGTFLR  I+IG     AGRMGD P
Sbjct: 147 NLQIDADETANGGARCNGVLLSDGELVHSRTVVLTTGTFLRAHINIGLEVKEAGRMGDKP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--- 235
           + +L  +  +  F  GRLKTGTP R+   ++ + K EK  AD+   PFSF+  ++     
Sbjct: 207 AKALGEALNRLGFRMGRLKTGTPPRIAKNSVDFSKLEKHEADDPPTPFSFLNHEVWLSAS 266

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T    + I+ +N+  +   + ++   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQLPCYLTYTTPRVNEIVRDNLHVNRHVTEEV--TGPRYCPSIESKVLRFGAR-VHQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ + YP GIS  LP   Q + +  I GLE+  +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLCYPQGISCTLPHAQQVELVHAIKGLEQAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMID 413
           ETK++SGLF AGQ+NGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+ID
Sbjct: 384 ETKRVSGLFFAGQLNGTTGYEEAAAQGIIAGANAAGKTLHQDGRQLHISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G + E+R + F +   +   
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTEKGYQFGLVSEQRYRHFQQTEHKLKT 503

Query: 474 LRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF-- 528
               L+ L   S     +  +   +    ++A++ L+ P  + S+  L  +CP    +  
Sbjct: 504 GIEALRGLQKHSNFWRQALGLPQAKVSIQKSAFDMLAVPADNISVNQLIDLCPSELSWLR 563

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSI 586
             + +  RL+IE+ Y+ +   Q  + ++++ EE   IP D DY S   +LSNE ++KL++
Sbjct: 564 DDNDLATRLKIEALYSFFVDEQQRDVEDVRREESLCIPGDIDYFSKSLSLSNEERQKLTL 623

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++P  +  AS+I+G+TP+ +  +L Y+KK
Sbjct: 624 IQPQTIAAASRIQGVTPSTILRILKYVKK 652


>gi|164428879|ref|XP_956189.2| hypothetical protein NCU11170 [Neurospora crassa OR74A]
 gi|157072320|gb|EAA26953.2| hypothetical protein NCU11170 [Neurospora crassa OR74A]
          Length = 717

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/625 (46%), Positives = 390/625 (62%), Gaps = 14/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T     +G  SCNP+ GG+GKG ++REID
Sbjct: 40  RPFDVVVIGGGHAGSEACAAAARAGARTALVTPSVENLGVCSCNPSFGGIGKGIMIREID 99

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GRV D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ E+ S  NL ++   
Sbjct: 100 ALDGLAGRVIDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKKHMRAELESYPNLSLVYNS 159

Query: 124 VAGFNTEKN---------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+     +N          I+ + ++   ++  S V++TTGTFL G IHIG    P+GRM
Sbjct: 160 VSDIVVSENDNPSNGARSKITGVRLESGEVLPTSQVIITTGTFLGGEIHIGMEAYPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI- 233
           G+  +  L  S  +  F  GRLKTGTP RLD K+I ++  EKQ+ D+   PFS++ + + 
Sbjct: 220 GEKATFGLSKSLREAGFKLGRLKTGTPPRLDKKSINFNILEKQYGDDPPNPFSYLNEAVA 279

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C  T TN  TH I+  N+  +      +K  GPRYCPS+E KI+RF E+  H +
Sbjct: 280 VKDQLHCWATYTNHATHEIVRANLDKTIHIRETVK--GPRYCPSLESKIIRFSEKERHLV 337

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG + D++YPNG+S  +P E Q   +RTIPGLE V + +PGY +EYDY++P+ L  
Sbjct: 338 WLEPEGFDNDIIYPNGLSMTVPAEAQLALLRTIPGLEDVIMTQPGYGVEYDYVDPRSLKR 397

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I GL+LAGQINGTTGYEEAA QG+VAGIN+ R +  L+ +  SR D YIGVMID
Sbjct: 398 TLETKAIRGLWLAGQINGTTGYEEAAGQGIVAGINAGRAATGLEPVTLSRADGYIGVMID 457

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+E+R++ R DNAD+RLT +G   G +G+RR   F     +   
Sbjct: 458 DLITKGVSEPYRMFTSRSEFRMTTRSDNADSRLTALGRNWGVVGDRRWSHFQDENGQMAE 517

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDARKFSSL 531
           LR +L   +L+ +   +     K D + R+A E L +   SI+ L+   + P    FS  
Sbjct: 518 LRRILSETILSPQAWQNAGFDVKADSRRRSALEILCFKGASIEKLYESGVVPKLMDFSER 577

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           V ER  IE  YA    +  +E    + EE   +P D DY  + +LS   K  L   +P +
Sbjct: 578 VRERTFIEGLYAPQIEKHELERARFEREEDLRLPLDLDYDQIASLSLAEKGVLKATRPES 637

Query: 592 LLQASKIEGMTPAALNLLLIYIKKN 616
           L QA +IEG+TPA    LL Y+K+ 
Sbjct: 638 LAQARRIEGITPAGCMRLLAYVKRR 662


>gi|304320460|ref|YP_003854103.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
 gi|303299362|gb|ADM08961.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/599 (54%), Positives = 410/599 (68%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EAAA AA+ GA TALITHK ++IG MSCNPAIGGLGKGHLVREIDA
Sbjct: 6   DYDVIVVGGGHAGTEAAAAAARSGAQTALITHKAASIGEMSCNPAIGGLGKGHLVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGR AD  GIQFR+LN  KGPAVRGPRTQADR  YR A+Q  +   E++ +I+ EV
Sbjct: 66  LDGLMGRAADRGGIQFRMLNRSKGPAVRGPRTQADRFHYRTAVQDLLAELEDISLIEAEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A        +  +V+ D   +  ++VVLTTGTFLRGVIH G  +IPAGR GD  + +L  
Sbjct: 126 ADLIVSNGHVMGVVLSDGREVSATSVVLTTGTFLRGVIHRGTERIPAGRYGDQAATALGE 185

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    GRLKTGTPARL   +I W + E Q ADE  +PFSF+T+ +   QI CGIT 
Sbjct: 186 RLEALALPLGRLKTGTPARLVKTSIDWSRLETQEADEAPVPFSFLTETLPLPQIACGITA 245

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHRII +N+  SA+YSG I S GPRYCPSIEDKIVRF +R+ HQIFLEPEGL+   
Sbjct: 246 TTAETHRIIADNLHQSAVYSGAIGSKGPRYCPSIEDKIVRFPDRSSHQIFLEPEGLDEPW 305

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGIST+LP+++Q   IR+IPGLE   I R GYAIEYDY++P+ L  +LE + + GLF
Sbjct: 306 VYPNGISTSLPDQVQEALIRSIPGLEGAEIARYGYAIEYDYVDPRALSHSLELRALPGLF 365

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEA AQGL+AG+N++R++  L  +   R ++YIGV+IDDL + GV EPY
Sbjct: 366 LAGQINGTTGYEEAGAQGLIAGLNASRRARGLSPVWLERREAYIGVLIDDLVTHGVTEPY 425

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMFTSRAEYR+SLR DNAD RLTP G     +G  R++ F    +     RS+L    +T
Sbjct: 426 RMFTSRAEYRLSLRADNADLRLTPRGQTWDLVGPARREMFHMKQERVARARSILTETSVT 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            +      IS  +DG+ R   + L+ P    + L S+ PD     + +   L+ ++ Y+ 
Sbjct: 486 PQEAEEAGISVNKDGRRRRLLDLLALPIVEFEQLSSLHPDIPSIGADLRPILEADALYSG 545

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           Y  RQ  E   +K EE  +IP DF Y  +P LS EL+EKL  ++P +L QA++IEG+TP
Sbjct: 546 YLDRQEAEIVALKKEEDTVIPADFRYDLVPGLSAELREKLDRIRPHHLGQAARIEGVTP 604


>gi|42526340|ref|NP_971438.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema denticola ATCC 35405]
 gi|81170588|sp|Q73PH1|MNMG_TREDE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|41816452|gb|AAS11319.1| glucose inhibited division protein A [Treponema denticola ATCC
           35405]
          Length = 628

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/625 (42%), Positives = 381/625 (60%), Gaps = 18/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+G GHAG EAA  +A++G +  LIT    + G +SCNP+IGG+ KG++VREIDA
Sbjct: 6   DYDVIVVGAGHAGIEAALASARMGEAVLLITQTLDSAGRLSCNPSIGGISKGNIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG++ADA+ IQ+R+LN  +GPAV+ PR QAD+ LY    +  I  ++NL V Q  V
Sbjct: 66  LGGEMGKLADASMIQYRLLNKSRGPAVQAPRVQADKFLYSQLAKHAIELEKNLHVFQDTV 125

Query: 125 AGFN---------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                         EK  +  +  +         VVL TGTF+ G I+IG+ + P GR+G
Sbjct: 126 IDIVSSNTNESGYVEKGSVQYVKTERGREFSAKAVVLATGTFMEGKIYIGEYESPDGRLG 185

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  K  F  GRLKTGTP R+  ++     TE+Q ADE + PFSF   +I  
Sbjct: 186 ERAAIGLGPALAKKGFTVGRLKTGTPMRILRRSFDSSLTEEQEADEIMRPFSFSNAEIHR 245

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
              +C IT TN ETH II EN+  +A++SG I   G RYCPSIEDKI +F ER+ H +++
Sbjct: 246 PYAKCYITHTNQETHDIIRENLHRAALFSGKITGTGARYCPSIEDKIKKFPERDRHHVYI 305

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGLNT+ +Y NG+S++LPE++Q + IRTIP  + V I RP YA++Y Y++P +L   L
Sbjct: 306 EPEGLNTEELYINGLSSSLPEDVQDRMIRTIPCFKDVIITRPAYAVDYAYVSPIQLSSDL 365

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-------KSNKLDCICFSRTDSYI 408
           +T++I GLFLAGQINGT+GYEEA  QG++AGIN+A        K  K       R ++YI
Sbjct: 366 QTRRIEGLFLAGQINGTSGYEEAGGQGIIAGINAALFSRSLKFKDEKYVPFVLKRDEAYI 425

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GVMIDDL ++GV EPYRMFT+RAEYR++LR D AD RLT    ++G   +    R  + +
Sbjct: 426 GVMIDDLVTQGVDEPYRMFTARAEYRLNLRHDTADERLTERAYQIGLQTKEASNRLKEKL 485

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
                + SL K + +T   ++         GK  +  + L  P  S++ + +I  +++ +
Sbjct: 486 LTREKIISLWKDIKITRDLIAKNPELKNHIGK--SLADALHDPQVSLECICAIDENSKDY 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           S+ ++E  ++E  Y  Y   Q  +  ++K  E   IP DFDY ++  LS E + +L  ++
Sbjct: 544 SAELLESAELEIRYEHYIAVQNRKIAKVKRMENTKIPADFDYDAVSGLSTESRTRLKEVR 603

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P  + QAS+I G+ P+ + LL I +
Sbjct: 604 PETIGQASRIRGIRPSDIMLLSILL 628


>gi|195487892|ref|XP_002092085.1| GE13994 [Drosophila yakuba]
 gi|194178186|gb|EDW91797.1| GE13994 [Drosophila yakuba]
          Length = 661

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/631 (43%), Positives = 407/631 (64%), Gaps = 21/631 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++G+ T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 31  YDVVVIGGGHAGTEASAAAARMGSRTMLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S  NL++    V 
Sbjct: 91  DGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD 150

Query: 126 GFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               E          + +++    ++R  +VVLTTGTFLR  I+IG    PAGR+GD+P+
Sbjct: 151 NLLIEDEQDTQARRCTGVLLASGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRIGDAPA 210

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--- 236
            +L  +  +  F  GRLKTGTP R+   ++ + + ++   D+  +PFSF+   +      
Sbjct: 211 KALGEAIDRLGFRMGRLKTGTPPRIAKSSVDYSQLQRHDGDDPPMPFSFLNKDVWLPAKD 270

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T T  +   I+ +N+  +   + +I   GPRYCPSIE KI+RFG +  HQ++LE
Sbjct: 271 QLPCYLTYTTPKVSDIVRDNLHVNRHVTEEI--TGPRYCPSIESKILRFGAK-VHQVWLE 327

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEGL++ +VYP GIS  LP + Q + +  I GLEK  +++PGY +EYD+I+P+EL+PTLE
Sbjct: 328 PEGLDSPLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLE 387

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDD 414
           TK++ GLF AGQINGTTGYEEAAAQG++AG N+A K+   D   +  SRT+ YIGV+IDD
Sbjct: 388 TKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHGDGRQLTISRTEGYIGVLIDD 447

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G + G +   R + F +  +     
Sbjct: 448 LTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTKKGYEFGLVSSDRYQHFQQTEERLQSA 507

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   +     +  +   +    +TA++ L  P  + +I+ L  I P+   +   
Sbjct: 508 IESLRRLRKHTHYWRQALDLPKAKASVEKTAFDMLGIPADNITIEQLIQIHPNELSWLKG 567

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
              + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++KL+++
Sbjct: 568 ERNLAERLKIEALYSFFVDEQQRDVEDVRREERLSIPADIDYFSKSLSLSNEERQKLTLI 627

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P  +  AS+I+G+TP+ +  +L Y+KK  V
Sbjct: 628 QPQTIAAASRIQGVTPSTIVRILKYVKKAEV 658


>gi|207080326|ref|NP_001128989.1| protein MTO1 homolog, mitochondrial precursor [Pongo abelii]
 gi|75041983|sp|Q5RB71|MTO1_PONAB RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|55728493|emb|CAH90989.1| hypothetical protein [Pongo abelii]
          Length = 692

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/641 (43%), Positives = 401/641 (62%), Gaps = 26/641 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGIIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHTPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+  +S                     A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFSSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
              +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQAAMNE 673


>gi|58696842|ref|ZP_00372364.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536952|gb|EAL60118.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 603

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/600 (48%), Positives = 379/600 (63%), Gaps = 25/600 (4%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G AV GPR QADR+LY
Sbjct: 1   MSCNPAIGGVAKGVVVREVDALDGIMGRAIDRASIHSVILNSSRGAAVWGPRAQADRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFL 158
           + A+Q  IL+  NL V +  V  F  E N      I +++      I    VVLTTGTFL
Sbjct: 61  KQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEHILTGKVVLTTGTFL 120

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           +GVIHIG+   P+GRMGD P+  L N+  K+DF  GRL+TGTP RLD  TI W   ++Q 
Sbjct: 121 QGVIHIGEQTTPSGRMGDKPAVELANTLNKYDFRLGRLRTGTPPRLDRGTINWSILQEQV 180

Query: 219 ADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-YSGDIKSYGPRYCPS 277
            D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y  D+    PRYCPS
Sbjct: 181 GDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSYLSDV--VAPRYCPS 238

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IE K+ +F E++ HQIFLEPEGL+ D VYPNGIS +LP E+Q + I++I GLE   I+RP
Sbjct: 239 IEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQREMIKSIKGLENAEILRP 298

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR-KSNKL 396
           GYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA QG++AGIN+A     K 
Sbjct: 299 GYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGIIAGINAALSAFEKK 358

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
           +     RTDSYIGVMIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +
Sbjct: 359 ESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLV 418

Query: 457 GERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQ 516
              R       ++    L   L SL +T + L S  I    DG  +TA + LSYP+    
Sbjct: 419 SHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWN 478

Query: 517 NLFSICPDARKFSS----------------LVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            L  I P+    +                  + E ++IE+ Y  Y  RQ  + K ++ E 
Sbjct: 479 KLQEIWPELSSVTRWNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEI 538

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
              IP DF+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 539 NTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 598


>gi|149199475|ref|ZP_01876510.1| glucose-inhibited division protein A [Lentisphaera araneosa
           HTCC2155]
 gi|149137410|gb|EDM25828.1| glucose-inhibited division protein A [Lentisphaera araneosa
           HTCC2155]
          Length = 609

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 369/621 (59%), Gaps = 31/621 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIVIGGGHAG EA+  +A++GA T LIT     IG MSCNPAIGG+ KGH+VREID
Sbjct: 2   KNYDVIVIGGGHAGIEASLASARMGAETLLITQNLDHIGQMSCNPAIGGIAKGHVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G MG+  DA+ +QFR+LN  +GPAV  PR Q D+ LY+  M++++   E L   Q E
Sbjct: 62  AMGGEMGQNTDASALQFRMLNASRGPAVWSPRAQCDKVLYQRRMKQQLEKTEKLHTHQAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              F TEK+ I ++  Q        + VL  GTF+RG++H G  ++P GR GD+ ++++ 
Sbjct: 122 GLSFVTEKSKIIAVQTQFGDKFEAKSFVLCCGTFMRGLMHFGPQQLPGGRTGDTAADAIS 181

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--------DKIT 234
            S       +  RLKTGTP R+  KTI ++K E+Q        FS+          D+  
Sbjct: 182 ESLKNDLGLELMRLKTGTPPRVLAKTIDFEKLERQDG--ECGEFSYWPREKEYETIDRGG 239

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C I RT+ ET ++I +N+  S +Y+G I + G RYCPSIEDKI RFG+++ HQ+F
Sbjct: 240 IPQMPCYIGRTSAETKQVIADNLHLSPMYNGSIDAIGTRYCPSIEDKIHRFGDKDSHQVF 299

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG+ T+  Y NGIST+LP +IQ++ + +IPGLEK  I R  YA+EYD ++P +   +
Sbjct: 300 LEPEGVFTEEYYLNGISTSLPVQIQNKIVHSIPGLEKAEIARYAYAVEYDVVSPHQTQNS 359

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  K    LF+AGQINGT+GYEEAA QGL+AG N+A        +   R  +YIGVMIDD
Sbjct: 360 LALKSWPNLFVAGQINGTSGYEEAAGQGLIAGANAAGLVAGKPPLILERDQAYIGVMIDD 419

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +K + EPYR+FTSRAEYR+ LR DNAD RL+ I    G +   + K         +  
Sbjct: 420 LVTKDISEPYRLFTSRAEYRLLLRQDNADRRLSKIAYDYGLLPYEKYKIAKDKETLIDDE 479

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
              LK+     K+L     S K                 + +++             V E
Sbjct: 480 IERLKNERHHGKSLWEHLSSHKN----------------TYESVV----GESDLPDDVKE 519

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           ++QI++ Y  Y  R+  + +  K   K  IP+D DY ++  L NE K KLS  +P +L Q
Sbjct: 520 QVQIDARYECYIQREKQQVERQKRLAKNPIPEDLDYLNITGLGNEAKNKLSRYRPVDLGQ 579

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A++I+G+TPA + L+ ++IK+
Sbjct: 580 AARIDGVTPAEIGLIQVHIKR 600


>gi|270295024|ref|ZP_06201225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D20]
 gi|270274271|gb|EFA20132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D20]
          Length = 624

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/624 (42%), Positives = 364/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   I+ +V           VVLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 121 DTVQEILVENGEITGVVTLWGVTFHAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K     GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C
Sbjct: 181 LTESIAKHGITFGRMKTGTPVRIDGRSVHYEDMEIQDGECDFHKFSFMDIHVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHRILQEGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKPQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP  IQ   ++ IP    + I RPGYAIEYD+ +P +L  TLETK I
Sbjct: 301 TTQELYLNGFSSSLPMNIQIAALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKNI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIMAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R K   +  +  N +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLAKEERYKLLTEKREAVNRIIDFARN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +I+N+        R+          
Sbjct: 481 YSMKPALINPVLEQLGTTPLRQGCKLIDLINRPQITIENIAEHVSAFKRELDKISDRKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  + P  
Sbjct: 541 IVEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLMKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 601 IAQASRIPGVSPSDINVLLVLCGR 624


>gi|163796497|ref|ZP_02190457.1| Glucose-inhibited division protein A subfamily [alpha
           proteobacterium BAL199]
 gi|159178347|gb|EDP62891.1| Glucose-inhibited division protein A subfamily [alpha
           proteobacterium BAL199]
          Length = 635

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/594 (47%), Positives = 378/594 (63%), Gaps = 1/594 (0%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+TH+  TIG MSCNPAIGGLGKGHLVREIDALDG+MGR  D +GIQFRVLN  KGP
Sbjct: 34  RTLLLTHRIDTIGVMSCNPAIGGLGKGHLVREIDALDGIMGRAIDRSGIQFRVLNRSKGP 93

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVRGPR QADR+LY++A+   +   E L +  G V            + + D S  R   
Sbjct: 94  AVRGPRAQADRKLYKIAIAEILAEFECLTIEAGAVEDLIVSGGRCLGVRLADGSERRSGA 153

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           VVLTTGTFLRG IH+G+ + PAGR+GD P+  L  +     F  GRLKTGTP RLDG+TI
Sbjct: 154 VVLTTGTFLRGEIHLGEERTPAGRVGDGPAVGLAQTLEHAGFSLGRLKTGTPPRLDGRTI 213

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            W   + Q  D    PFS +T++IT  Q  C IT T+   H +I  N+  + +YSG I  
Sbjct: 214 DWSGLDAQDGDNPPEPFSTLTERITVPQTVCHITYTSEIAHELIRANLHRAPMYSGQISG 273

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF ++  HQIFLEPEGL+   VYPNGIST+LP ++Q   + +IPGL
Sbjct: 274 TGPRYCPSIEDKVVRFADKPRHQIFLEPEGLDDPTVYPNGISTSLPRDVQDAVVASIPGL 333

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV-AGIN 388
           E+  I++ GYAIEYDY++P+EL P L+T++I GL+LAGQINGTTGYEEAA QGL+     
Sbjct: 334 ERAGILQHGYAIEYDYVDPRELTPALQTRRIPGLYLAGQINGTTGYEEAAGQGLIAGANA 393

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +       +     R D YIGVM+DDL S+G  EPYRMFTSRAEYR+ LR DNAD RLT 
Sbjct: 394 ALAAGGATESFAVDRADGYIGVMVDDLISRGAPEPYRMFTSRAEYRLRLRADNADQRLTE 453

Query: 449 IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL 508
           +G   G +G+ R   +    +  +  R  L++L  T   L    I   QDG+ R A++ L
Sbjct: 454 LGRNAGLVGQARWLAYCAKREALSVSRETLQNLAGTPPELGRRGIPVNQDGQRRRAWDLL 513

Query: 509 SYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
            +   S + + +  P+A      ++++L IE+ YA+Y  RQ  + +  + +E  ++P+D 
Sbjct: 514 GHAGVSREQILAAWPEAAAIPVAILDQLAIEALYASYLERQDSDIQAFRRDEALMLPEDL 573

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           D  S+ +LS E+++ L   +P  L QA+++ G+TPAA   LL ++K    + + 
Sbjct: 574 DPGSIGSLSTEIRDILRHARPRTLGQAARLPGVTPAATLALLRHVKGQKSRNSA 627


>gi|257466622|ref|ZP_05630933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917777|ref|ZP_07914017.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691652|gb|EFS28487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 614

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/614 (39%), Positives = 361/614 (58%), Gaps = 4/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDVIVVGGGHAGCEAALASARLGLKTAMITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MGR  D   +Q + LN  KGPA R  R QAD+ LYR  M+  +   ENL ++Q  
Sbjct: 62  ILGGEMGRHTDQFNLQLKHLNESKGPAARVTRGQADKFLYRTNMRLTLEHTENLSILQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +++ +  +  +     +  +V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEKLLVQEDEVYGVKTRLGIEYKAKSVILCTGTFLKGKVVIGDITYSAGRQGESAAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +      R +T TP R+D K+I + K ++   ++    FS  T+K  N  +   +T
Sbjct: 182 ENLRELGLQVERYQTATPPRIDKKSIDFSKLKELHGEKHPRYFSIFTEKKENTIVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F E+  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPEKTDHQIFLEMESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE+  I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQDEILHTISGLEQAKIMRYGYAVEYDYMPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAGIN+ARK    + I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLVAGINAARKILGKNPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+  SR+EYR+ LR DNA  RL     ++G + + +     K IQ        LK++ +
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYEKTKEIGLLTQEKLLLVEKAIQNVKQEVERLKTISI 481

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + +  +      +      K     + L   + +  +L  +  +   +   V  +++   
Sbjct: 482 SMQEANQFLEKKQCSDLFSKGVKIADILKKKEITYLDLKELI-EIPDYPEFVHNQIETIL 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  +  R+  +  + K  E +LIPKDFD+SS+  +SN     L  +KP ++ +A +I G
Sbjct: 541 KYEIFMEREEKQILKFKELENQLIPKDFDFSSVKGISNIALSGLLEVKPLSIGEAGRISG 600

Query: 601 MTPAALNLLLIYIK 614
           +T   L LL+ +++
Sbjct: 601 VTGNDLALLIAHLR 614


>gi|21739274|emb|CAD38685.1| hypothetical protein [Homo sapiens]
          Length = 681

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/639 (43%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 25  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 84

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 85  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 144

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 145 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 204

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 205 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 264

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 265 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 321

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 322 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 381

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 382 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 441

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R         
Sbjct: 442 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLE 501

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+   S                     A + L Y +  + +L    P+  +K+
Sbjct: 502 EGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 561

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 562 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 621

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
              +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 622 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 660


>gi|74024895|ref|NP_036255.2| protein MTO1 homolog, mitochondrial isoform a [Homo sapiens]
 gi|18644895|gb|AAG42814.3| MTO1 protein [Homo sapiens]
 gi|55961489|emb|CAI14880.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|112180532|gb|AAH11051.2| Mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569147|gb|EAW48762.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_c [Homo sapiens]
 gi|193786654|dbj|BAG51977.1| unnamed protein product [Homo sapiens]
          Length = 692

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/639 (43%), Positives = 399/639 (62%), Gaps = 23/639 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+   S                     A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
              +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 671


>gi|294784391|ref|ZP_06749682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
 gi|294487963|gb|EFG35318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_27]
          Length = 627

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/625 (38%), Positives = 360/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KG A R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGSAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             ++ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCVEEILVEDIKDSQNSSYIKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ E +++S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSEETIEVVREMMEYSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      I   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPIIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G I + + +   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIIDKDKIEFLEKAIDDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    ++   S    ++  K   A E L   D S  NL  +  +   +
Sbjct: 481 YMEINNLKNISVSMNEANNFLESLGVEERFVKGVKASEILKIKDVSYDNL-KVFLNLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|237743153|ref|ZP_04573634.1| glucose inhibited division protein A [Fusobacterium sp. 7_1]
 gi|229433449|gb|EEO43661.1| glucose inhibited division protein A [Fusobacterium sp. 7_1]
          Length = 627

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/625 (37%), Positives = 356/625 (56%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             +  I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNLSYEKKVIGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S         R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRDLGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KERNNTVPTWLTYTSEKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEIGIVDKDKIEFLEKAINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    S    ++  K   A E L   D S  +L +   +   +
Sbjct: 481 YMEINNLKNISVSMNEANKFLESLDIEERFVKGVKASEILKIKDVSYDDLKTFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ +I
Sbjct: 600 PLSVGEATRISGVTSNDITLIIAHI 624


>gi|195027347|ref|XP_001986544.1| GH20470 [Drosophila grimshawi]
 gi|193902544|gb|EDW01411.1| GH20470 [Drosophila grimshawi]
          Length = 658

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 406/630 (64%), Gaps = 22/630 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EA A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 27  YDVIVIGGGHAGTEACAAAARMGARTLLLTHKLDTIGEMSCNPSFGGIGKGHLMREVDAL 86

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+QRE+ +  NL++    V 
Sbjct: 87  DGVCARCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKRAVQRELFNTANLEIRAAGVD 146

Query: 126 GFNTE-------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               +           S +++++  ++R   VVLTTGTFLR  I+IG     AGRMGD P
Sbjct: 147 NLQIDVDESSSSNTRCSGVLLENGELVRSRAVVLTTGTFLRAHINIGLEVREAGRMGDKP 206

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-- 236
           + +L  +  + +F  GRLKTGTP R+   +I + + EK  AD+  +PFSF+ D++     
Sbjct: 207 AKALGEALNRLNFRMGRLKTGTPPRIARSSIDFTQLEKHAADDPPVPFSFLNDEVWLPAS 266

Query: 237 -QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q+ C +T T      I+ EN+  +   + ++   GPRYCPSIE K++RFG R  HQ++L
Sbjct: 267 EQMPCYLTYTTPRVDEIVRENMHQNRHVTEEV--TGPRYCPSIESKVLRFGAR-VHQVWL 323

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG ++ + YP GIS  LP   Q + +R I GLE   +++PGY +EYD+I+P+EL+PTL
Sbjct: 324 EPEGFDSPLCYPQGISCTLPHAQQVELVRAIKGLESAEVVQPGYGVEYDFIDPRELYPTL 383

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS--NKLDCICFSRTDSYIGVMID 413
           ETK++SGLF AGQINGTTGYEEAAAQG++AG N+A K+       +  SRT+ YIGV+ID
Sbjct: 384 ETKRVSGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTLSQNGQQLSISRTEGYIGVLID 443

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DLTS G  EPYRMFTSRAE+R+SLRPDNAD RLT  G K G + E+R + F +  Q+   
Sbjct: 444 DLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTEKGYKFGLVSEKRYQHFQQTEQKLKA 503

Query: 474 LRSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF-- 528
               LK L   S     +  +   +    ++A++ L+ P  + ++  L  +CP    +  
Sbjct: 504 GIKSLKGLQKHSNFFRQALGLPQTKASIQKSAFDMLAVPADNITVDQLIDLCPGELSWLR 563

Query: 529 -SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSI 586
               +  RL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S   +LSNE ++K+++
Sbjct: 564 TDGDISARLKIEALYSFFVDEQQRDVEDVRREERLCIPTDIDYFSKSLSLSNEERQKVTL 623

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           ++P  +  AS+I+G+TP+ +  +L Y+KK 
Sbjct: 624 IQPQTIAAASRIQGVTPSTILRILKYVKKE 653


>gi|254445039|ref|ZP_05058515.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobiae bacterium DG1235]
 gi|198259347|gb|EDY83655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Verrucomicrobiae bacterium DG1235]
          Length = 612

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/633 (42%), Positives = 373/633 (58%), Gaps = 40/633 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M++  YDVIV G GHAGCEAA  AA++GA T +++    TI +MSCNPAIGG+ KG +VR
Sbjct: 1   MLDE-YDVIVCGAGHAGCEAALAAARMGARTLVVSGNIDTIAAMSCNPAIGGVAKGQIVR 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G M   AD +GIQFR+LN  KGPAV+ PR Q D+++Y L M+  +  QENL + 
Sbjct: 60  EIDALGGEMAVNADVSGIQFRLLNASKGPAVQSPRAQCDKKVYALRMKHVLELQENLSIF 119

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V G   +   ++      +      +VV+TTGTFLRG++HIGK K   GRMGD  + 
Sbjct: 120 QATVTGLIFKAGKVAGCRTNLDVEFFGKSVVVTTGTFLRGLMHIGKNKNEGGRMGDFSAQ 179

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--------- 231
           +L +SF++   +  RLKTGTP RL G+TI + + E+Q  DER   F F            
Sbjct: 180 TLSSSFLEAGIELERLKTGTPPRLLGRTIDFSQLEEQKGDERPSLFGFYDTRGEKDLFHV 239

Query: 232 ----------KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                     K    Q+ C IT T+ +T RI+ EN+  SA+Y G+I+  GPRYCPSIEDK
Sbjct: 240 EQRGERLAGWKPGTDQVSCWITYTSADTQRIVNENLHLSAMYGGEIEGTGPRYCPSIEDK 299

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
            VRF  +  H +FLEPEG NTD  Y NG+ST+LP   Q + +R+I GLE V+++RP YA+
Sbjct: 300 FVRFANKTRHMLFLEPEGRNTDEYYVNGLSTSLPFAAQLEMLRSIEGLEAVHLLRPAYAV 359

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYD+  P +LF  LE+KK+  LF AGQINGT+GYEEAA QGLVAG+N+  K    + +  
Sbjct: 360 EYDFAPPTQLFSHLESKKVENLFFAGQINGTSGYEEAACQGLVAGVNAVLKVRGEEPMVL 419

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R D YIGV+IDDL +KG  EPYRMFTSRAEYR+     +A+ R+     K G + + R 
Sbjct: 420 KRHDGYIGVLIDDLVTKGTREPYRMFTSRAEYRLLFNHGSAELRMLDHASKHGLVSDERL 479

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
            R  +  ++       L+   +   + ++  I  +  GK                    +
Sbjct: 480 ARMKRKKEDVEKWIHWLEVNRMGHDSWAT--IVRRGVGKD------------------EL 519

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             + R   +  +E++     Y  Y  R+  + +++K  EK  IP DFDYS L  L NE  
Sbjct: 520 PEELRSLEASTLEQVLYRVKYKGYLERETRQIEKLKDVEKIKIPADFDYSKLKGLRNESV 579

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            KL+  +P  L QAS+I G+ P+ +++L+I ++
Sbjct: 580 VKLTETQPATLAQASRISGVNPSDISILMIALR 612


>gi|170750484|ref|YP_001756744.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Methylobacterium radiotolerans JCM 2831]
 gi|205831534|sp|B1M186|MNMG_METRJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170657006|gb|ACB26061.1| glucose inhibited division protein A [Methylobacterium
           radiotolerans JCM 2831]
          Length = 633

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/572 (54%), Positives = 403/572 (70%), Gaps = 1/572 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH  +TIG+MSCNPAIGGLGKGHLVRE+DALDGLMGRVADAAGIQFR+LN +KGPAVR
Sbjct: 36  LVTHDPATIGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAAGIQFRLLNRRKGPAVR 95

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVMQDNSMIRCSTVV 151
           GPRTQADR+LY  AMQ  +     L V+ G       + +  +  +V+ D   + C  VV
Sbjct: 96  GPRTQADRKLYAAAMQTAVAETAGLTVVAGACEDLAFDAEGRLCGLVLADGRTLACGAVV 155

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LTTGTFLRG+IHIG+ +IPAGR+G++P+  L  +  +     GRLKTGTP RLDG+TI W
Sbjct: 156 LTTGTFLRGLIHIGERQIPAGRVGEAPAVGLAQTLERLGLRLGRLKTGTPPRLDGRTIDW 215

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
              E Q AD   +PFS +T++ITN QI CGITRT    H +I  N+  S +YSG I S G
Sbjct: 216 SGLEMQEADAEPVPFSTLTERITNPQIRCGITRTTRAVHDLIRANLHRSPMYSGGIASRG 275

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRFG+R GHQIFLEPEGL+   +YPNGISTALPE +Q   +R IPGLE+
Sbjct: 276 PRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPTIYPNGISTALPEAVQRDLVRLIPGLER 335

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           V I+RPGYAIEYDY++P+EL   L+ K++ GLFLAGQINGTTGYEEAA QGLVAG+N+AR
Sbjct: 336 VEILRPGYAIEYDYVDPRELDLGLQVKRLPGLFLAGQINGTTGYEEAAGQGLVAGLNAAR 395

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +  L    F R +SY+GVMIDDL ++GV EPYRMFTSR+EYR+SLR DNAD RLTP G+
Sbjct: 396 HAGGLGIAGFDRAESYLGVMIDDLVTQGVSEPYRMFTSRSEYRLSLRVDNADARLTPRGI 455

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
            LGC+G  R  +FA         R+ L ++ LT    +   IS  +DG  RT ++ L+YP
Sbjct: 456 ALGCVGGHRAAQFAAGQAALGAARARLDAVSLTPSQAAPHGISLNRDGIRRTGFQLLAYP 515

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
           +    +L ++ PD  +    + +R++ +++YA Y  RQ  +    + +E   +P   DY+
Sbjct: 516 EIGWADLAAVWPDLAEVPPRIADRMKTDATYAVYLDRQNADIAAFRRDEAVRLPPGLDYA 575

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
           ++  LSNE++ KL  ++P  L QA++IEG+TP
Sbjct: 576 AISGLSNEMRVKLETVRPGTLGQAARIEGVTP 607


>gi|85057733|ref|YP_456649.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789838|gb|ABC65570.1| glucose inhibited division protein A [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 634

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/617 (40%), Positives = 367/617 (59%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG E+A + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 19  YDSIVIGAGHAGIESALILAKK-HNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D A IQ ++LN  KGPAVR  R Q D+  Y   +   + +  NL +++G V 
Sbjct: 78  GGIMAKATDLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIILEILQNTPNLTLLEGLVN 137

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +KN +  + + D   I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 138 NLIIQKNQVQGVCLIDGRKINAKTVIITTGTYLASQILIGDTKKASGPNGVPTTYGISTQ 197

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITR 244
             +  F+  RLKTGTP R+   +I + +T+ Q  D     F F+T + T   Q  C +T 
Sbjct: 198 LKEIGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQTFGFLTPQTTKRPQEPCFLTH 257

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L  + 
Sbjct: 258 TNQTTHQVIRKHLNQSAMYGGYVEGIGPRYCPSIEDKVVRFCDKNSHQIFIEPESLYLNE 317

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LF
Sbjct: 318 MYLQGLSTSMPQHVQHEILKTIPGLQNAKITKYAYAIEYDAFNPNQLKHSLETKKIQNLF 377

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPY
Sbjct: 378 LAGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPY 437

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS--LV 482
           R+ TSRAE+R+ LR DNAD RL   G +LG I ++    F     + N L    K+  ++
Sbjct: 438 RLLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDKKDYNSFQNKKAKINLLLEKSKNYEIL 497

Query: 483 LTSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + S NLS     +    G+  T  + +  P+ +   L     +  K    + E+++I+  
Sbjct: 498 VNSDNLSYLKQQNSASLGEKTTLAQLIKRPELNFCTLQHFLQE--KADKTIYEQVEIQIK 555

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   EA+++   E++ IP   +Y+ +  LS E KEKL ++KP  L QA++I G+
Sbjct: 556 YEGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAKEKLDLIKPQTLGQATRILGV 615

Query: 602 TPAALNLLLIYIKKNTV 618
               +++LL+Y++K+  
Sbjct: 616 NQVDISILLVYLEKHHA 632


>gi|225554736|gb|EEH03031.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus G186AR]
          Length = 699

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/638 (44%), Positives = 391/638 (61%), Gaps = 25/638 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QAYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G
Sbjct: 156 VGDIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++  
Sbjct: 216 EAATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 DDEDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHM 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   D V YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L
Sbjct: 334 IWLEPEGFEPDEVIYPNGISMTIPADAQLAMLRTVAGLENVRMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 394 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++   + 
Sbjct: 454 VDDLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQI 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-------- 523
             L++LL++    S   S        D   R+A++ L   D SI ++             
Sbjct: 514 TELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSG 573

Query: 524 ---DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E 
Sbjct: 574 KAYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEE 633

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  L  ++P ++  A +IEGMTP A   LL+Y+++ T 
Sbjct: 634 RAALEKVRPESIGMARRIEGMTPVAALKLLVYVRRTTA 671


>gi|205831495|sp|Q2NJ23|MNMG_AYWBP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 618

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/617 (40%), Positives = 367/617 (59%), Gaps = 7/617 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG GHAG E+A + AK   +T LIT     + S+ CNP+IGG  KG +VREIDAL
Sbjct: 3   YDSIVIGAGHAGIESALILAKK-HNTLLITGSLKQVASLPCNPSIGGPAKGVVVREIDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M +  D A IQ ++LN  KGPAVR  R Q D+  Y   +   + +  NL +++G V 
Sbjct: 62  GGIMAKATDLAQIQIKMLNSSKGPAVRALRAQIDKLEYPQIILEILQNTPNLTLLEGLVN 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +KN +  + + D   I   TV++TTGT+L   I IG  K  +G  G   +  +   
Sbjct: 122 NLIIQKNQVQGVCLIDGRKINAKTVIITTGTYLASQILIGDTKKASGPNGVPTTYGISTQ 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITR 244
             +  F+  RLKTGTP R+   +I + +T+ Q  D     F F+T + T   Q  C +T 
Sbjct: 182 LKEIGFEVIRLKTGTPPRVKKNSIDYSQTKIQMGDNLEQTFGFLTPQTTKRPQEPCFLTH 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH++I +++  SA+Y G ++  GPRYCPSIEDK+VRF ++N HQIF+EPE L  + 
Sbjct: 242 TNQTTHQVIRKHLNQSAMYGGYVEGIGPRYCPSIEDKVVRFCDKNSHQIFIEPESLYLNE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y  G+ST++P+ +QH+ ++TIPGL+   I +  YAIEYD  NP +L  +LETKKI  LF
Sbjct: 302 MYLQGLSTSMPQHVQHEILKTIPGLQNAKITKYAYAIEYDAFNPNQLKHSLETKKIQNLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EPY
Sbjct: 362 LAGQMNGTSGYEEAACQGLMAGINASLKLQNKPPFVLKRNEAYIGVLIDDLITKGAKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS--LV 482
           R+ TSRAE+R+ LR DNAD RL   G +LG I ++    F     + N L    K+  ++
Sbjct: 422 RLLTSRAEFRLLLRHDNADLRLKDYGYQLGLIDKKDYNSFQNKKAKINLLLEKSKNYEIL 481

Query: 483 LTSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           + S NLS     +    G+  T  + +  P+ +   L     +  K    + E+++I+  
Sbjct: 482 VNSDNLSYLKQQNSASLGEKTTLAQLIKRPELNFCTLQHFLQE--KADKTIYEQVEIQIK 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  +   EA+++   E++ IP   +Y+ +  LS E KEKL ++KP  L QA++I G+
Sbjct: 540 YEGYIAKAQKEAQKLARLEQKKIPSKINYADIKNLSKEAKEKLDLIKPQTLGQATRILGV 599

Query: 602 TPAALNLLLIYIKKNTV 618
               +++LL+Y++K+  
Sbjct: 600 NQVDISILLVYLEKHHA 616


>gi|332886126|gb|EGK06370.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Dysgonomonas mossii DSM 22836]
          Length = 624

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/624 (40%), Positives = 369/624 (59%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YD+IV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MNFKYDIIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  + +  +  I + +NL + Q
Sbjct: 61  IDALGGQMGIVTDKTAIQFRMLNKSKGPAMWSPRAQSDRARFIMKWREIIENTDNLFIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +   ++ +            VVLT GTFL G++HIGK ++  GR+ +  S  
Sbjct: 121 DTVTSLIVQDKTVTGVKTAMGVEFSAKAVVLTNGTFLNGLMHIGKTQLGGGRVSEPASFG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           +      F F T R+KTGTPAR+DG+++ +   E+Q  D+    FS++  +  T +Q+ C
Sbjct: 181 ITEQLRDFGFTTDRMKTGTPARVDGRSVDFSLMEEQKGDDDFHKFSYLDYEPRTLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH  + + +  S +Y+G IKS GPRYCPSIE KIV F E+  HQ+FLEPEG 
Sbjct: 241 WITYTNDDTHATLRDGLDDSPLYNGQIKSIGPRYCPSIETKIVTFEEKTSHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T   Y NG S++LP   Q + ++ IP    ++I RPGYAIEYD+ +P +L  TLETK +
Sbjct: 301 STQEYYLNGFSSSLPLHTQIEALQKIPAFRNIHIYRPGYAIEYDFFDPTQLKHTLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGL+AGIN+   ++  +     R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQINGTTGYEEAGGQGLIAGINAHINTHGGNEFVLKRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT  G  +G   + R     +  +E   + + + +
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADVRLTEKGYNIGLAKQERIALLNEKKEEVQKIINFVAN 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIER-- 535
             L  + ++   + +      +     + ++ P  +I+++    P  + +   +   R  
Sbjct: 481 YSLKPEYINEGLSKLGTNPLKQGMKLKDVITRPQITIKSIAEYIPAFKVELDKIPNRREE 540

Query: 536 ----LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
                +I   Y  Y  R+   A +I   E   I   FDY ++ +LS E ++KLS + P  
Sbjct: 541 IIEAAEIIIKYDGYIKREQTIADKITRLENIRIKDKFDYENISSLSTEARQKLSKINPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P  +++LL+ + +
Sbjct: 601 IAQASRIPGVSPNDISILLVLLGR 624


>gi|269958543|ref|YP_003328330.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Anaplasma centrale str. Israel]
 gi|269848372|gb|ACZ49016.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Anaplasma centrale str. Israel]
          Length = 637

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/591 (46%), Positives = 373/591 (63%), Gaps = 6/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 37  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 96

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 97  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 156

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 157 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 216

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 217 DRSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 276

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R
Sbjct: 277 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLR 336

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 337 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 396

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 397 AGANAALSLSQSHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLLLRSDNAD 456

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 457 MRLTEMGYNAGLVSERRFGVLYNKKQEVDRLVEELHRTSITPHTLSKCGIFISQNGEKKT 516

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 517 AFELLGHPSITMDILMQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 576

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 577 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|332559703|ref|ZP_08414025.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides WS8N]
 gi|332277415|gb|EGJ22730.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides WS8N]
          Length = 597

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/597 (52%), Positives = 401/597 (67%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G   ALIT + S +G MSCNPAIGGLGKGHLVREIDALDG+MGR AD AGIQFR+LN K
Sbjct: 1   MGVQVALITLRKSGLGVMSCNPAIGGLGKGHLVREIDALDGIMGRAADEAGIQFRLLNRK 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR QADR LYR A+QR + +Q  L VI+GEV         +  + + D + + 
Sbjct: 61  KGPAVQGPRAQADRRLYREAVQRLLAAQPGLTVIEGEVVDLQVNGGRVQGVSLADGTSVW 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LT+GTFL G+IHIG  + P GRMGD PS  L     +     GRLKTGTP RLDG
Sbjct: 121 AGRVILTSGTFLNGIIHIGDQRRPGGRMGDDPSQRLAAVLGELSLARGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI W + E Q  DE  + FSF+      RQI CGIT TN  TH+I+ +N+  SA+Y G 
Sbjct: 181 RTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGITHTNARTHQIVRDNLSRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D VYPNGIST+LP E+Q  ++RTI
Sbjct: 241 IEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDDTVYPNGISTSLPAEVQEAYVRTI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE V I++PGYAIEYDY +P+EL PTLE K + GL+ AGQINGTTGYEEAAAQGL AG
Sbjct: 301 AGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALGGLYFAGQINGTTGYEEAAAQGLAAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A      + + FSR+ SY+GVMIDDLTS+GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAALSIRDREPLHFSRSGSYLGVMIDDLTSRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TPIG+ LGC+ + R++ F +  +     R+LL+    T   L+   I   QDG  RTA+ 
Sbjct: 421 TPIGLDLGCVSDARRESFNRKREMLEKGRALLEGSSFTPSKLNELGIQVSQDGMRRTAFA 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            +++ + +   +             + ++L  +  YA +  RQ  EA  +K +E   IP 
Sbjct: 481 VMAFGEEAASAVARGVEGYGDLPEEIRQQLAKDGLYAQFILRQEEEAAALKRDEAIRIPA 540

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           DFDY+ L  LS+ELK KL   +P  + QA+++EGMTP+AL L+L  +++       +
Sbjct: 541 DFDYAPLSGLSSELKSKLMRARPSTIAQAAQLEGMTPSALTLILARLRRAGRDAAAV 597


>gi|296328795|ref|ZP_06871309.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154130|gb|EFG94934.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 632

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/625 (37%), Positives = 358/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 5   MDKDYDVIVVGAGHAGVEAALASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 65  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 124

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             ++ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 125 DCVEEILVEDIKDSQNSNYIKEVTGIKTRLGIIYNAKVIVLATGTFLKGKIVIGDVSYSA 184

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 185 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFTK 244

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 245 KEKNNTVPTWLTYTSDKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKEKH 304

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 305 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 364

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 365 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 424

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I + 
Sbjct: 425 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKSINDV 484

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    +    ++  K   A E L   D    +L  +  +   +
Sbjct: 485 YMEINNLKNISVSMNEANKFLENLDIEERFVKGVKASEILKIKDVRYDDL-KVFLNLNDY 543

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L  ++
Sbjct: 544 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLDEVR 603

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ Y+
Sbjct: 604 PLSIGEATRISGVTSNDITLIIAYM 628


>gi|50593214|ref|NP_011278.2| Mto1p [Saccharomyces cerevisiae S288c]
 gi|115502421|sp|P53070|MTO1_YEAST RecName: Full=Mitochondrial translation optimization protein 1;
           Flags: Precursor
 gi|256272512|gb|EEU07492.1| Mto1p [Saccharomyces cerevisiae JAY291]
 gi|285811982|tpg|DAA07882.1| TPA: Mto1p [Saccharomyces cerevisiae S288c]
          Length = 669

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/626 (45%), Positives = 401/626 (64%), Gaps = 19/626 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI---LSQENLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+    +  NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D   +P SF+ + +     
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDALPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+  S I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-ARKSNKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+      + + +   R+++YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSEAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QA +I+G+T AAL  L    +K
Sbjct: 638 LTIGQARRIQGITAAALFELYRVARK 663


>gi|169409548|gb|ACA57894.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Callicebus moloch]
          Length = 690

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/640 (44%), Positives = 403/640 (62%), Gaps = 23/640 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYSESVILTTGTFLRGMIVIGLEMHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    KQ  D   +PFSFM + +   
Sbjct: 216 QPSIGLAQTLEKLGFVLGRLKTGTPPRIAKESINFSILNKQTPDNPSLPFSFMNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++     I   GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNSRVDEIVLKNLHLNSHVKETI--RGPRYCPSIESKVLRFPNR-QHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSVTLPAELQEKIITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRINQKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G  + GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+  +S    +                A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFSSSKWKNLIPQASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSDEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
              +P  +  AS+I G+TPAA+  LL ++K    +   + 
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKATQQRQAAMT 672


>gi|222475410|ref|YP_002563827.1| glucose inhibited division protein A (gidA) [Anaplasma marginale
           str. Florida]
 gi|254811505|sp|B9KGL7|MNMG_ANAMF RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|222419548|gb|ACM49571.1| glucose inhibited division protein A (gidA) [Anaplasma marginale
           str. Florida]
          Length = 637

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/591 (46%), Positives = 373/591 (63%), Gaps = 6/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 37  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 96

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 97  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 156

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 157 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 216

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 217 DRSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 276

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R
Sbjct: 277 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLR 336

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 337 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 396

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 397 AGANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNAD 456

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 457 MRLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKT 516

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 517 AFELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 576

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 577 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|154272573|ref|XP_001537139.1| hypothetical protein HCAG_08248 [Ajellomyces capsulatus NAm1]
 gi|150409126|gb|EDN04582.1| hypothetical protein HCAG_08248 [Ajellomyces capsulatus NAm1]
          Length = 673

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 389/636 (61%), Gaps = 25/636 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDAL
Sbjct: 12  YDVVVIGGGHAGSEACAAAARLGARTALVTPSLSNIGVCSCNPSIGGIGKGTMIREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ G+VAD +GIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+V 
Sbjct: 72  DGVAGKVADKSGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGKVG 131

Query: 126 GFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G++
Sbjct: 132 DIIVSKDNLPAGSQGKIIGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLGEA 191

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
            +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   IPFS++ +++    
Sbjct: 192 ATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLQVQPGDSPPIPFSYLNNRVDVDD 251

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H I+
Sbjct: 252 EDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHMIW 309

Query: 295 LEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           LEPEG   D V YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L P
Sbjct: 310 LEPEGFEPDEVIYPNGISMTIPADAQLAMLRTVAGLENVRMLQAGYGVEYDYVDPRSLRP 369

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+D
Sbjct: 370 TLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIMVD 429

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+EYRIS R DNAD RLT  G ++G +G++R + F++   +   
Sbjct: 430 DLITKGVSEPYRMFTSRSEYRISTRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQITE 489

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---------- 523
           L++LL++    S   S        D   R+A++ L   D SI ++               
Sbjct: 490 LQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSGKA 549

Query: 524 -DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
             A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E + 
Sbjct: 550 YTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSTEERA 609

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            L  ++P ++  A +IEGMTP A   LL+++++ T 
Sbjct: 610 ALEKVRPESIGMARRIEGMTPVAALKLLVHVRRTTA 645


>gi|238494138|ref|XP_002378305.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus flavus NRRL3357]
 gi|220694955|gb|EED51298.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus flavus NRRL3357]
          Length = 688

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/634 (44%), Positives = 387/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L V++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELLATEGLSVLEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I  S VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVVITTGTFLGGEIHIGMTVYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDAKTIDFKSLEVQKGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H II  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 275 VQVGDEGQLNCWMTHTNEASHDIIRANLDKSIHIRETV--RGPRYCPSLESKIIRFQDKQ 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+PTLETK ISGL+LAGQINGTTGYEEA  QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPTLETKLISGLYLAGQINGTTGYEEATGQGIIAGTNAGLSAQGRSPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARNAGVVSDKRWRHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            + N L++LL +  ++S   S      + D   R+A + L   +  I  L          
Sbjct: 513 AQINELQTLLANTRMSSNAWSRRGFKARVDTSIRSALDLLCLDEVEIDALIPHIESPSGK 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ    ++   +E  L+P D DYS +  +S E K
Sbjct: 573 VYTPSSFAPEIRSRVAIERRYAPYVARQETAVRKFLQDESLLLPPDLDYSKVKGISTEEK 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL ++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGAIRLLAHVRR 666


>gi|330991276|ref|ZP_08315227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Gluconacetobacter sp. SXCC-1]
 gi|329761295|gb|EGG77788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Gluconacetobacter sp. SXCC-1]
          Length = 623

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/622 (50%), Positives = 405/622 (65%), Gaps = 6/622 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R+YDVIV+GGGHAGCEAAA AA+ GA T L+TH+  TIG MSCNPAIGG+GKGHLVRE
Sbjct: 1   MKRAYDVIVVGGGHAGCEAAAAAARAGARTLLLTHRFDTIGVMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMG  AD AGI F++LN  KGPAV GPR QADR LYRLA+Q  +   E LD+++
Sbjct: 61  IDALDGLMGIAADRAGIHFKLLNRSKGPAVHGPRAQADRTLYRLAIQDLLARTEGLDIVE 120

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G         +  +  +V +D        VVL TGTFLRG IHIG    PAGR+GD P+N
Sbjct: 121 GAAGDLLVNAQGGVEGVVCEDGRSFASGAVVLATGTFLRGTIHIGHESEPAGRVGDRPAN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L           GRLKTGTPAR+   +I WD   +   D     FS MTD ITN  I C
Sbjct: 181 ALGRRLAALGLRMGRLKTGTPARIARDSIEWDSLAEDRGDAVPEAFSRMTDAITNPMISC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG- 299
            IT T   TH II EN++ SA+Y G I   GPRYCPSIEDK+VRF +R  HQIFLEPEG 
Sbjct: 241 RITATTPRTHEIIRENLQLSALYGGVISGRGPRYCPSIEDKVVRFAQRESHQIFLEPEGL 300

Query: 300 ---LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
               +  +VYPNGIST+LPE +Q + +R+IPGLE   ++RPGYA+EYDY++P+EL PTLE
Sbjct: 301 PSNPDGALVYPNGISTSLPEHVQLEMLRSIPGLENCRMVRPGYAVEYDYVDPRELAPTLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K + GLFLAGQ+NGTTGYEEA AQGL+AGIN+AR +   + +  +R  +YIGVMIDDLT
Sbjct: 361 LKNLPGLFLAGQVNGTTGYEEAGAQGLIAGINAARHAAGQEGVTLARGQAYIGVMIDDLT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTP+G++ GC+G  R  R        +   +
Sbjct: 421 TQGVSEPYRMFTSRAEYRLTLRADNADLRLTPLGLEWGCVGSARAARLLSDRTAIDAAMA 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              S   T   L    ++   DG+ R+  + L+  D +   +  + P     S  V + L
Sbjct: 481 RASSETCTPDALRREGVNVSADGRARSLMDVLAT-DATPDVIARVAPWFADLSPRVAQHL 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y+ Y  RQ  E +++  E + ++P D DY  +  LS E++E+L+ ++P     A 
Sbjct: 540 MTEARYSGYIARQEREIRQLASESRIVLPADLDYHQIGGLSTEMQERLAQVRPVTFGAAQ 599

Query: 597 KIEGMTPAALNLLLIYIKKNTV 618
           +I G+TP+AL  LL +++   V
Sbjct: 600 RIPGITPSALVALLAHVRHRPV 621


>gi|256838284|ref|ZP_05543794.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides sp. D13]
 gi|256739203|gb|EEU52527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Parabacteroides sp. D13]
          Length = 625

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/625 (41%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA LG+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANLGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDQTAIQFRMLNRSKGPAMWSPRAQSDRARFIDCWRGILENMLNLSIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    N + R   VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DMVQELIIEHGQVCGVRTGMNVVFRAGAVVLTNGTFLNGLLHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     T R+KTGTP R+DG+++ +D+ E+Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLVSLGIQTDRMKTGTPVRIDGRSVHFDEMEEQPGENDFHKFSYMDTSHRKLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H I+ E +  S +Y+G IKS GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHDILREGLPDSPLYNGQIKSIGPRYCPSIETKIVTFADKTQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    V I RPGYAIEYD+ +P +L   LETK+I
Sbjct: 301 ATQEYYLNGFSSSLPLDIQLRALQAIPAFRDVQIYRPGYAIEYDFFDPTQLRHNLETKQI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +        R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGQPFILGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    ++G   + R     +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYQMGLAKQDRYDLLREKKESRDAIIRFAET 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S    +           ++ +  P  +++NL  + P  R +          
Sbjct: 481 YSVKPQYINSGLEKLGTAPLSHGCKLFDVVLRPQTTLENLADLVPALRAELDKVPASRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+S+ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIKREQIIADKINRLENIRIKGKFDYNSIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVLLGR 625


>gi|237716852|ref|ZP_04547333.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D1]
 gi|262405623|ref|ZP_06082173.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_22]
 gi|294644432|ref|ZP_06722195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294810426|ref|ZP_06769083.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229442835|gb|EEO48626.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. D1]
 gi|262356498|gb|EEZ05588.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_22]
 gi|292640267|gb|EFF58522.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294442391|gb|EFG11201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085942|emb|CBK67465.1| glucose-inhibited division protein A [Bacteroides xylanisolvens
           XB1A]
          Length = 628

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/624 (41%), Positives = 368/624 (58%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E    + +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  
Sbjct: 121 DTVCELLVENGEATGLVTAWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ + Q  +     FSFM     + +Q++C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDARSVHFDQMDTQAGECDFHKFSFMNTSTHHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKDQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMEIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAFKLGLAKEDRYQLVKSKKEAVEQIVSFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-----------RK 527
             +    ++     I      +     E L+ P  +I+N+    P             + 
Sbjct: 481 YSMKPALINDALEKIGTTPLRQGCKLIEILNRPQVTIENITEYVPAFQRELEKATSSDQD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDYS++ +LS E ++KL  +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYSTIQSLSTEARQKLVKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|169777055|ref|XP_001822993.1| translation optimization protein 1 [Aspergillus oryzae RIB40]
 gi|83771730|dbj|BAE61860.1| unnamed protein product [Aspergillus oryzae]
          Length = 688

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/634 (44%), Positives = 387/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L V++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELLATEGLSVLEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I  S VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVVITTGTFLGGEIHIGMTVYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDAKTIDFKSLEVQKGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H II  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 275 VQVGDEGQLNCWMTHTNEASHDIIRANLDKSIHIRETV--RGPRYCPSLESKIIRFQDKQ 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+PTLETK ISGL+LAGQINGTTGYEEA  QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPTLETKLISGLYLAGQINGTTGYEEATGQGIIAGTNAGLSAQGRSPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARNAGVVSDKRWRHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            + N L++LL +  ++S   S      + D   R+A + L   +  I  L          
Sbjct: 513 AQINELQTLLANTRMSSNAWSRRGFKARVDTSIRSALDLLCLDEVEIDALIPHIESPSGK 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ    ++   +E  L+P D DYS +  +S E K
Sbjct: 573 VYTPSSFAPEIRSRVAIERRYAPYVARQETAVRKFLQDESLLLPPDLDYSKVKGISTEEK 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL ++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGAIRLLAHVRR 666


>gi|56417042|ref|YP_154116.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. St. Maries]
 gi|81170513|sp|Q5PA19|MNMG_ANAMM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|56388274|gb|AAV86861.1| glucose inhibited division protein A [Anaplasma marginale str. St.
           Maries]
          Length = 637

 Score =  673 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/591 (46%), Positives = 373/591 (63%), Gaps = 6/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 37  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 96

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 97  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 156

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 157 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 216

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 217 DRSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 276

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R
Sbjct: 277 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLR 336

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 337 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 396

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 397 AGANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNAD 456

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 457 MRLTEMGYNAGLVSERRFGVLYNKKQEMDRLVDELHRTSITPHTLSKCGIFISQNGEKKT 516

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 517 AFELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 576

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 577 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 627


>gi|257452997|ref|ZP_05618296.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_5R]
 gi|317059537|ref|ZP_07924022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. 3_1_5R]
 gi|313685213|gb|EFS22048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. 3_1_5R]
          Length = 614

 Score =  673 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/614 (39%), Positives = 360/614 (58%), Gaps = 4/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDVIVVGGGHAGCEAALASARLGLKTAIITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G MGR  D   +Q + LN  KGPA R  R QAD+ LYR  M+  +   ENL ++Q  
Sbjct: 62  ILGGEMGRHTDQFNLQLKHLNESKGPAARVTRGQADKFLYRTNMRLTLEHTENLSILQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +++ +  +  +     +  +V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEKLLVQEDEVYGVKTRLGIEYKAKSVILCTGTFLKGKVVIGDITYSAGRQGESAAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +  +      R +T TP R+D K+I + K ++   ++    FS  T+K  N  +   +T
Sbjct: 182 ENLRELGLQVERYQTATPPRIDKKSIDFSKLKELHGEKHPRYFSIFTEKKENTIVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F E+  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPEKTDHQIFLEMESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE+  I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQDEILHTISGLEQAKIMRYGYAVEYDYMPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAGIN+ARK    + I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLVAGINAARKILGKNPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+  SR+EYR+ LR DNA  RL     ++G + + +     K IQ        LK++ +
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYDKTKEIGLLTQEKLLLVEKAIQNVKQEVERLKTISI 481

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + +  +      +      K     + L   + +  +L  +  +   +   V  +++   
Sbjct: 482 SMQEANQFLEKKQCSDFFSKGVKIADVLKKKEITYLDLKELI-EIPDYPEFVRNQIETIL 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  +  R+  +  + K  E + IPKDFD+SS+  +SN     L  +KP ++ +A +I G
Sbjct: 541 KYEIFMEREEKQILKFKELEHQFIPKDFDFSSVKGISNIALSGLLEVKPLSIGEAGRISG 600

Query: 601 MTPAALNLLLIYIK 614
           +T   L LL+ +++
Sbjct: 601 VTGNDLALLIAHLR 614


>gi|121996812|ref|YP_001001599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Halorhodospira halophila SL1]
 gi|189039344|sp|A1WSY5|MNMG_HALHL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|121588217|gb|ABM60797.1| glucose inhibited division protein A [Halorhodospira halophila SL1]
          Length = 633

 Score =  673 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/620 (46%), Positives = 402/620 (64%), Gaps = 4/620 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIVIGGGHAG EAAA AA+LG ST LITH   TIG++SCNPAIGG+GKGHLVR
Sbjct: 1   MNTNRFDVIVIGGGHAGTEAAAAAARLGRSTLLITHNLETIGALSCNPAIGGIGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G+MGR+ADA+ I  RVLN +KGPAVR  R QADR  Y  A +R + +   L ++
Sbjct: 61  EIDALGGVMGRLADASAIHARVLNQRKGPAVRATRIQADRPTYARAARRALDALPGLALL 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q               +  +  + +    VV+T GTFL G IHIG ++  AGR GD  ++
Sbjct: 121 QDAAEELLVADQRCYGVRTESGATLHADAVVVTAGTFLAGQIHIGHVQHSAGRAGDPAAD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIE 239
            L  S         RLKTGTP R+D +T+  ++ + Q  D     FS F   +    +  
Sbjct: 181 RLSASLRDLGLAVHRLKTGTPPRIDRRTVAVEQLDAQHGDTPRPLFSPFRPPEAPLPEAA 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I+ T  ETHRII + + HS +YSG I+S GPRYCPSIEDK+VRF +R+ HQ+FLEPEG
Sbjct: 241 CLISWTTPETHRIIRDALDHSPMYSGAIQSSGPRYCPSIEDKVVRFADRDHHQVFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNG+ST LP  +Q   IR++PGLE   I RPGYAIEYDY++P+ L P LE+  
Sbjct: 301 LDATELYPNGVSTGLPFTVQEALIRSMPGLEAARITRPGYAIEYDYLDPRGLTPWLESAT 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I+GL+LAGQINGTTGYEEAAAQGL+AG+N+AR S   D    +R ++YIGV+IDDL + G
Sbjct: 361 IAGLYLAGQINGTTGYEEAAAQGLIAGLNAARVSAGEDPWFPTREEAYIGVLIDDLVTTG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+ LR DNA++RLT +G +LG +G+ +  RFA+Y    N  R+ L 
Sbjct: 421 VTEPYRMFTSRAEHRLRLRDDNAEDRLTEVGRRLGSVGDDQWTRFARYRDALNAERARLN 480

Query: 480 SLVLTSKNLSSTSISFK--QDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERL 536
              +    L+++  +       + +T ++ L  P+ S  ++  I   +        +++L
Sbjct: 481 GTRVHPGRLTASQQARLGGALRRDQTLFDLLRRPELSYDDVRFIGGLEEADLPVRAVQQL 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE+ Y  Y  RQ +E +  +   +  +P+  DY+++  LS E++E+L+ ++P  + QA+
Sbjct: 541 EIEARYDGYVERQELENQRHQRYAQVRLPEALDYAAIDGLSTEVRERLTRMRPATVGQAA 600

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           ++ G+TPAA++LLLI++++ 
Sbjct: 601 RLPGVTPAAISLLLIHLRRR 620


>gi|281355411|ref|ZP_06241905.1| glucose inhibited division protein A [Victivallis vadensis ATCC
           BAA-548]
 gi|281318291|gb|EFB02311.1| glucose inhibited division protein A [Victivallis vadensis ATCC
           BAA-548]
          Length = 624

 Score =  673 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/627 (42%), Positives = 357/627 (56%), Gaps = 17/627 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIG GHAGCEAA  +A++GA T LIT     I  MSCNPAIGG+ KG +VREIDA+
Sbjct: 4   YDVVVIGAGHAGCEAAMASARIGAKTLLITLNMDHIAQMSCNPAIGGIAKGQVVREIDAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG V D+A IQFR+LN  KGPAV  PR+Q D+  Y+  M+  +     +DV+Q EV 
Sbjct: 64  GGAMGIVTDSASIQFRMLNRTKGPAVWSPRSQCDKVCYQRGMKLWLEQMPQVDVLQSEVT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
            F  +   I+ +  Q    I C+  V+TTGTFL G +H G    P GR GD PSNSL  +
Sbjct: 124 AFLMDNGKITGVTNQFGDEIHCAAAVVTTGTFLNGKLHYGLRNFPGGRAGDFPSNSLSAA 183

Query: 186 F-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-------DKITNRQ 237
              +     GRLKTGTPAR+  KTI + +  +Q  D     FS  +        +     
Sbjct: 184 LGEQLKLRLGRLKTGTPARILAKTIDFSQMARQECDSAEERFSCWSAGHSPALPEAVRHD 243

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C    +  ET  I+  N+++S +Y G IK  G RYCPS EDK+VRF +   H +FLEP
Sbjct: 244 LPCYQVYSTDETAEIVRRNLQYSPMYQGVIKGIGTRYCPSFEDKVVRFPQHPRHLLFLEP 303

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG  T+  Y NG+ST+LP E+Q Q I ++PG+E   + R  YAIEYD++ P +L  TL  
Sbjct: 304 EGAQTEEYYINGLSTSLPPEVQRQLIHSVPGMEHAVLSRYAYAIEYDFVFPDQLERTLRI 363

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K    LF AGQINGT+GYEEAA QGL+AG+N+AR +     +   R  SYIGVMIDDLT+
Sbjct: 364 KSCDNLFTAGQINGTSGYEEAAGQGLLAGLNAARIAQGKSPVELGRDSSYIGVMIDDLTT 423

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K ++EPYR+FTSRAEYR+ LR DNAD RL+    + G + E + + F  Y      +  L
Sbjct: 424 KDIIEPYRLFTSRAEYRLVLRQDNADLRLSEFAYETGLLPESKYREFCAYRSALTEVLEL 483

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIER 535
            +S     K+L         +     A   L +P         + P+         +   
Sbjct: 484 CRSRRHAGKSLLVHLKDLPDNTPLAEATVRLPFP-------AGLLPELNDDRQGRRIWRE 536

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           LQ+E+ Y  Y  R+  E   ++  E   IP DFDY  +  LSNE + KL  ++P  L QA
Sbjct: 537 LQVEARYDGYLQREAAEISRLRKLETLQIPADFDYDRIKGLSNESRSKLLKVRPTTLAQA 596

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNE 622
            +I+G+TPA + LL + + +   +  E
Sbjct: 597 GRIDGVTPADIALLQVALSRKNREATE 623


>gi|237738572|ref|ZP_04569053.1| glucose inhibited division protein A [Fusobacterium sp. 2_1_31]
 gi|229424055|gb|EEO39102.1| glucose inhibited division protein A [Fusobacterium sp. 2_1_31]
          Length = 627

 Score =  673 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/625 (37%), Positives = 360/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             +  +  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCVEEILVEDIKDRQNLSYEKKVIGVKTRLGLIYNTKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ + +K+S I SG + ++GPR+CPSI+ K++ F E+  H
Sbjct: 241 KEKNNTVPTWLTYTSEETIEVVRDMMKYSPIVSGMVNTHGPRHCPSIDRKVLNFPEKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K    + +   R+++YIGV+
Sbjct: 361 YPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEEPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I   
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFNKIKEVGIVDKDKIEFLEKSINNV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++  + ++   S    ++  K   A E L   D +  +L +   +   +
Sbjct: 481 YTEINNLKNISVSMNDANNFLESLGIEEKFVKGVKASEILKIKDVNYDDLKAFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIDKNINYDDIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|254995222|ref|ZP_05277412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Mississippi]
          Length = 631

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/591 (46%), Positives = 373/591 (63%), Gaps = 6/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 31  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 90

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 91  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 150

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 151 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 210

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 211 DRSSIDWSATAEQKGDLVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 270

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG+ST+ P ++Q + +R
Sbjct: 271 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNGVSTSCPIDVQLEMLR 330

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 331 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 390

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 391 AGANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNAD 450

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 451 MRLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKT 510

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 511 AFELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 570

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 571 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 621


>gi|313678731|ref|YP_004056471.1| glucose-inhibited division protein A [Mycoplasma bovis PG45]
 gi|312950831|gb|ADR25426.1| glucose-inhibited division protein A [Mycoplasma bovis PG45]
          Length = 613

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/619 (39%), Positives = 348/619 (56%), Gaps = 12/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G  T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGHKTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NLD+++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSELAYEYVLKQPNLDLLE 120

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       + N     +++++   I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEILVDDNGYFKGVLVENIGKIDAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKMPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETH+II ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHKIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + Y NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITYVNGLSTSMPIDVQELMIKSIPGLRNARVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    + I   R   YIGV+IDDL +KG 
Sbjct: 361 PNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKEPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD+RL+    K G I     ++     +  +     L S
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYKSGMISNDEYQKVIDKYKLIDDEIQRLNS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             L+ K+  +   +        T    +S PD    ++    P         IE +    
Sbjct: 481 THLSGKSDVALKYNITNGS---TLLNVISRPDVDPNDIIPDFP--------YIEEITTMV 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q  +A +    E   IP+D +Y  +  ++ E ++K   ++P  + QAS+I G
Sbjct: 530 RLYGYIEKQKSDANKAVRLENLRIPEDLNYFEVKNIAIEARQKFEKIRPATIGQASRISG 589

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA + +L+ +++    K
Sbjct: 590 INPADIQMLMFHLESRHKK 608


>gi|1322897|emb|CAA96953.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 679

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/620 (45%), Positives = 399/620 (64%), Gaps = 19/620 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI---LSQENLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+    +  NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D   +P SF+ + +     
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDALPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+  S I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-ARKSNKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+      + + +   R+++YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSEAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAALNLL 609
             + QA +I+G+T AAL  L
Sbjct: 638 LTIGQARRIQGITAAALFEL 657


>gi|283768648|ref|ZP_06341560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bulleidia extructa W1219]
 gi|283105040|gb|EFC06412.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bulleidia extructa W1219]
          Length = 624

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/624 (40%), Positives = 362/624 (58%), Gaps = 10/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IVIG GHAG EA   AA+LG  TALIT    TIG M CNP++GG  KG + REIDA
Sbjct: 3   DYDIIVIGAGHAGIEAGLAAARLGKKTALITINQETIGKMPCNPSVGGPAKGIVTREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG VAD   +QF++LN  KGP VR  R Q+D+  Y   M+   L QENL VI+  V
Sbjct: 63  LGGQMGYVADKTALQFKMLNSAKGPGVRALRVQSDKLAYSSMMKEICLKQENLTVIESLV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                EK     + +QD S++    V++TTGT++ G   I       G   +  +N L  
Sbjct: 123 ERLIVEKQEARGVELQDGSVLLSRAVIMTTGTYMSGKNMISDDVKIGGPDLEPTTNQLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIEC 240
           S  +    T RLKTGTP R+   TI + KT+ +        FS +T         +Q+ C
Sbjct: 183 SLRQVGVRTFRLKTGTPPRIRTSTIDFSKTKLEPGTPGFYHFSSLTKPDDVLPFEKQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETH II+ N+  S++YSG ++  GPRYCPSIEDK+VRF ++  H +FLEPE L
Sbjct: 243 YMTHTVPETHEIILNNLTKSSMYSGVVEGVGPRYCPSIEDKLVRFKDKERHLLFLEPESL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +    Y  G S++LP+E+Q Q + T+PGLE   I++  YAIEYD ++P ++  + E+K I
Sbjct: 303 SLPTTYIQGFSSSLPKEVQFQMVHTLPGLENCEIMKYAYAIEYDALDPVQMKSSFESKVI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAA QGL+AGIN+ RK ++ + I FSR  +YIGV++DDLT+KG 
Sbjct: 363 KNLFTAGQINGTSGYEEAAGQGLLAGINAVRKLDEKEPIIFSRDQAYIGVLVDDLTTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNA+ RLT IG ++G I + R + F +        +  L++
Sbjct: 423 KEPYRLLTSRAEYRLLLRHDNAEERLTGIGHQIGLISDERYEAFLRNQSLLALKKEELQT 482

Query: 481 LVLTSKNLSSTSISFKQ----DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +  +                 +    + +  P    ++LF +    ++    + E++
Sbjct: 483 SLFSMNDDRVKQYLLNHGYDDLSFSMNGEDLVKRPRLQARDLFKL--QGKEIDDNIAEKI 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            I+  Y  Y  +   EA+ +K  + R++ +  DY  +P LS E ++KL   KP  L +AS
Sbjct: 541 DIDIKYEGYIAKAKREAERLKTMDHRMLSETLDYDEIPNLSIEGRQKLKEFKPETLGKAS 600

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I G+ PA + +L +Y+K    + 
Sbjct: 601 RISGVNPADIAVLSMYLKNMRRRK 624


>gi|58584868|ref|YP_198441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75497718|sp|Q5GS25|MNMG_WOLTR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|58419184|gb|AAW71199.1| NAD/FAD-utilizing enzyme apparently involved in cell division, GidA
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 677

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/647 (46%), Positives = 388/647 (59%), Gaps = 58/647 (8%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           ST LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  STLLITHKISTIGEMSCNPAIGGVAKGIVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-----ISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+ +NL V +  V  F  E N      I +I+      
Sbjct: 88  AVWGPRAQADRKLYKKAIQEIILNHDNLTVKEESVDDFLIESNSNGEPYIKAIITSSGKQ 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFL+G++HIG+   P+GRMGD  +  L N+  K+DF  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLQGMVHIGEQTTPSGRMGDKSAVELANTLKKYDFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI-Y 263
           D  TI W   E+Q  +   +PFS++T+KI   Q+ C IT TN  THRII  N+  SA  Y
Sbjct: 208 DRSTINWSILEEQVGNNPPMPFSYLTEKINQPQVSCFITYTNENTHRIIQANLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             DI    PRYCPSIE K+ +F E+N HQIFLEPEGL+   VYPNGIS +LP E+Q + I
Sbjct: 268 LNDI--VAPRYCPSIEAKVKKFAEKNSHQIFLEPEGLDNITVYPNGISNSLPIEVQREMI 325

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            +I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQINGTTGYEEAA QG+
Sbjct: 326 NSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGI 385

Query: 384 VAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           +AGIN+A   S K +     RTDSYIGVMIDDL +KGV EPYR+FTSRAEYR+++R DNA
Sbjct: 386 IAGINAALSASQKKESFVLHRTDSYIGVMIDDLVTKGVTEPYRLFTSRAEYRLAIRSDNA 445

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G  +  +  +R       ++    L   L+SL +T + L    I    DG  +
Sbjct: 446 DRRLTQKGYNISLVSYKRYSALQNKLKSIKQLEEKLESLKITPEQLRFCGIKISHDGIRK 505

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSS-------------------------------- 530
           TA + LSYP+     L  I P+    +                                 
Sbjct: 506 TALDLLSYPNIDWNKLQEIWPELTNVTRWNDNKADQTVIQVVDTRIQKKNADSSVTRWND 565

Query: 531 -----------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                             + E + IE+ Y  Y  RQ  + K ++ E    IP +F+YS +
Sbjct: 566 KTGYWNDSKTTSNTIKNEICEAVAIEAKYKPYLVRQEADMKFLREEMNTQIPTNFNYSQI 625

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
             LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 626 KGLSSEVIEKLQAIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 672


>gi|151943582|gb|EDN61892.1| mitochondrial protein [Saccharomyces cerevisiae YJM789]
 gi|190407169|gb|EDV10436.1| mitochondrial translation optimization protein [Saccharomyces
           cerevisiae RM11-1a]
 gi|207345557|gb|EDZ72335.1| YGL236Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146278|emb|CAY79535.1| Mto1p [Saccharomyces cerevisiae EC1118]
          Length = 669

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/626 (45%), Positives = 401/626 (64%), Gaps = 19/626 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG GHAGCEAAA +++ GA T LIT   + IG  SCNP+IGG+GKG LV+EIDALDG
Sbjct: 39  VVVIGAGHAGCEAAAASSRTGAHTTLITPSLTDIGKCSCNPSIGGVGKGILVKEIDALDG 98

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI---LSQENLDVIQGEV 124
           LMG+V D AG+QF++LN  KGPAV GPR Q DRELY+  MQRE+    +  NL ++Q +V
Sbjct: 99  LMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLSLLQNKV 158

Query: 125 AGFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           A            +I  +V+ D + +    V++TTGTFL   IHIG  +I AGR+G+ P+
Sbjct: 159 ADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGRIGEQPT 218

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TN 235
             + N+   +  F  GRLKTGTPARL  ++I +   E Q  D+  +P SF+ + +     
Sbjct: 219 YGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDKLPVPMSFLNETVSVEPT 278

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +Q++C  T T  + H  +  N+  S I+  D    GPRYCPSIE KI+RF +R+ H+I+L
Sbjct: 279 KQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRYCPSIEAKILRFPDRSSHKIWL 337

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I++P Y +EYDY++P++L P+L
Sbjct: 338 EPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPRQLKPSL 397

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-ARKSNKLDCICFSRTDSYIGVMIDD 414
           ETK + GLFLAGQINGTTGYEEAAAQG++AGIN+      + + +   R+ +YIGV+IDD
Sbjct: 398 ETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSQAYIGVLIDD 457

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +LG I   R  ++++    Y+  
Sbjct: 458 LINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDKHLYDET 517

Query: 475 RSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFS 529
              L++  L+S+  SS    +     + R+A+E   + D  +  L+   PD         
Sbjct: 518 IRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKDMDLHKLYECIPDLPINLLDIP 577

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+DY  LP LS E K  L+ ++P
Sbjct: 578 MHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLSTECKLLLNRVQP 637

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QA +I+G+T AAL  L    +K
Sbjct: 638 LTIGQARRIQGITAAALFELYRVARK 663


>gi|255693287|ref|ZP_05416962.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides finegoldii DSM 17565]
 gi|260620966|gb|EEX43837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides finegoldii DSM 17565]
          Length = 628

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/624 (42%), Positives = 369/624 (59%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + +  + +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWRERLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +V       +   +VLT GTFL G++HIG+ K+P GRM +  S  
Sbjct: 121 DTVCELLVENGEVTGLVTVWGVTFKAKCIVLTAGTFLNGLMHIGRHKLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+D +++ +D+ E Q  +     FSFM   + + +Q++C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDARSVHFDRMETQDGECDFHKFSFMNTSVRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F +++ HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKSQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ IP  + + I RPGYAIEYDY +P +L  TLE+K I
Sbjct: 301 TTQELYLNGFSSSLPMDIQIAALKQIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    +LG   E R +           + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYQLGLAKENRYQLMKSKKGTVEQIVSFAQN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS-------- 529
             +    ++     I      +     E L+ P  +I+N+    P   R+          
Sbjct: 481 YSMKPALINDALKKIGTTPLRQGCKLIEILNRPQVTIENISEHIPAFQRELEKATSSDEG 540

Query: 530 --SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               +IE  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++KL  +
Sbjct: 541 RKEEIIEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQKLVKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|288801783|ref|ZP_06407225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica D18]
 gi|288335825|gb|EFC74258.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella melaninogenica D18]
          Length = 598

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/598 (39%), Positives = 344/598 (57%), Gaps = 9/598 (1%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA+T L+T   + IG MSCNPA+GG+ KG +VREIDAL G MG V DA  IQF +LN  
Sbjct: 1   MGANTCLVTMDMNKIGQMSCNPAVGGIAKGQIVREIDALGGYMGLVTDATAIQFHMLNRS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV  PR Q DR  +    +  +   +NLD+ Q +      E   +  I       I 
Sbjct: 61  KGPAVWSPRAQCDRGKFIWEWRTILDHTDNLDIFQDQADELLVENGKVLGIKTIWGIDIY 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
             TV++T GTFL G++HIGK K+  GR  +   ++   S  +      R+KTGTP R+D 
Sbjct: 121 ARTVIITAGTFLNGLMHIGKRKVEGGRCAEPAVHNFTESITRHGIRADRMKTGTPVRIDR 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +++ +D+ E Q  +     FSF        Q+ C    TN E H ++   +  S +++G 
Sbjct: 181 RSVHFDEMEPQPGETDYHQFSFYGPHRHLPQLPCWTCNTNEEAHEVLRRGVADSPLFNGQ 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+S GPRYCPSIE K+V F ++N H +FLEPEG++T+ +Y NG S+++P E+Q + I  I
Sbjct: 241 IQSTGPRYCPSIETKLVTFPDKNSHPLFLEPEGVDTNEMYLNGFSSSMPWEVQLEAIHKI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           P L    I RPGYAIEYDY +P +L  +LE+K I GLF AGQ+NGTTGYEEA  QGLVAG
Sbjct: 301 PALRDAKIYRPGYAIEYDYFDPTQLKQSLESKVIEGLFFAGQVNGTTGYEEAGGQGLVAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           IN+A      D    +R +SYIGV+IDDLT+KGV EPYRMFTSRAEYRI LR D+AD RL
Sbjct: 361 INAALLCAGKDPFVMNRDESYIGVLIDDLTTKGVDEPYRMFTSRAEYRILLRQDDADARL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS--STSISFKQDGKTRTA 504
           T     +G   + R   + +  +  N +     +  +  + ++     +           
Sbjct: 421 TERAYNIGIAKQDRYDWWMQKKEHINRILDFCNNTSVKPEVVNGFLEHLGTSPIKGATKI 480

Query: 505 YEFLSYPDFSIQNLFSICPDARKF-------SSLVIERLQIESSYAAYTGRQMIEAKEIK 557
            + ++ P  + +NL ++ P  ++           + E  +I+  Y  Y  R+ + A++++
Sbjct: 481 VDLVARPQVNFENLSAVIPSLKEAIEASPNRKEEIAEAAEIKLKYKGYIDRERVFAEKMR 540

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             E   I   F YS L  LS E ++KL  ++P  L QAS+I G++P+ +N+LL+ + +
Sbjct: 541 RLEDIKIKGHFKYSELHDLSTECRQKLEQIQPETLAQASRIPGVSPSDINVLLVLMGR 598


>gi|255263837|ref|ZP_05343179.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thalassiobium sp. R2A62]
 gi|255106172|gb|EET48846.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thalassiobium sp. R2A62]
          Length = 620

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/619 (51%), Positives = 427/619 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV+V+GGGHAGC+AA+ +A+ GA T L+T K + IG MSCNPAIGGLGKGHLVREID
Sbjct: 2   KQFDVVVVGGGHAGCDAASASARAGARTLLVTLKLADIGVMSCNPAIGGLGKGHLVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MGRVAD AGIQFR+LN +KGPAV+GPR QADR++YR  M  E+ +Q+NL++ + E
Sbjct: 62  ALGGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKIYRETMLCEMKAQQNLELCEAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    +   ++ + + D ++I   +VVLT GTFLRG IHIG      GRMGD+P+  L 
Sbjct: 122 VAALEIDAGEVTGVKLADGTVISAYSVVLTAGTFLRGKIHIGPESRSGGRMGDAPAIKLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                  F+ GRLKTGTP RLDGKTI WD  ++Q  D     FSF T      QI CG+T
Sbjct: 182 EQIDSLGFELGRLKTGTPPRLDGKTINWDGLDRQDGDNEPSFFSFSTRSTDTPQISCGVT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N+  SA+Y G I   GPRYCPSIEDK+VRF E++ HQIFLEPE L+ +
Sbjct: 242 HTNEQTHDIIQKNLDKSAMYGGQIDGVGPRYCPSIEDKVVRFAEKSSHQIFLEPESLSDN 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIST+LP ++Q+ ++ +I GLEK  I++ GYAIEYDY++P+ L  TLET+++ GL
Sbjct: 302 VIYPNGISTSLPLDVQYDYVHSIFGLEKAVILQAGYAIEYDYLDPRGLRSTLETREMPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQINGTTGYEEAAAQGLVAG+NSA ++   +   F R +SYIGVMIDDLT++GV EP
Sbjct: 362 YLAGQINGTTGYEEAAAQGLVAGLNSALRAQNKEQQTFDRVNSYIGVMIDDLTTRGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAE+R++LR DNAD RL+P  + LG +GER+   F +        +S+L    +
Sbjct: 422 YRMFTSRAEFRLTLRADNADQRLSPRAIHLGLLGERQAASFLEKQDALARAKSILDEATV 481

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T++ L S  +    DG+ RTA+  LS P+ S+ ++  + P   +    +  ++  ++ Y 
Sbjct: 482 TARQLHSVGVDINPDGRRRTAFSALSIPNVSLDHVRLVVPALSRVKEEIQVQISKDALYF 541

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQM +A  ++ E+K  IP    ++ +  LSNEL  KL   KP NL QA +IEGMTP
Sbjct: 542 QYVERQMRDALALEKEKKTKIPDTMIFAGMNGLSNELAVKLDRAKPENLGQAGRIEGMTP 601

Query: 604 AALNLLLIYIKKNTVKLNE 622
           AAL L+L  +++   + + 
Sbjct: 602 AALTLILSKLRQLEKRKSA 620


>gi|158285249|ref|XP_308209.4| AGAP007661-PA [Anopheles gambiae str. PEST]
 gi|157019900|gb|EAA04633.4| AGAP007661-PA [Anopheles gambiae str. PEST]
          Length = 666

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/628 (42%), Positives = 405/628 (64%), Gaps = 17/628 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVIV+GGGHAG EA + AA++GA T L+T K STIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 37  SFDVIVVGGGHAGTEACSAAARMGARTLLVTQKRSTIGEMSCNPSFGGIGKGHLIREVDA 96

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+  R  D +G+Q++VLN +KGPAV GPR Q DR+LY+  +Q+ + +  NL +++  V
Sbjct: 97  LDGVCARCCDRSGVQYKVLNRRKGPAVWGPRAQIDRKLYKREVQQTLENTPNLTIVEASV 156

Query: 125 AGFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                    E+  ++ + + D   +   ++V+TTGTFLRG I+IG    PAGR+GD P+ 
Sbjct: 157 EDIVLSEDSEQPRLAGVKLADGRTMTADSLVITTGTFLRGQINIGLETRPAGRIGDEPAI 216

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            L  S  +  F  GRLKTGTP R+   +I +++  +   D+  +PFSF+ D++    ++Q
Sbjct: 217 GLAKSIEELGFRLGRLKTGTPPRIHRDSIRFEQLARHPGDDPPVPFSFLNDRVWLEAHQQ 276

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           ++C +T+T  + + I++ N+  +   + ++   GPRYCPSIE KI+RFG +  HQI+LEP
Sbjct: 277 LDCFLTQTTAQVNDIVLRNLHCNRHVTEEL--TGPRYCPSIESKILRFGHK-LHQIWLEP 333

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG +++++YPNG+S  LP + Q Q +R + GLE+  ++RPGY +EYD+++P+EL PTLET
Sbjct: 334 EGFDSELIYPNGLSCTLPADEQVQLVRCLEGLEQAEVVRPGYGVEYDFVDPRELLPTLET 393

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K++ GLFLAGQINGTTGYEEAAAQGL+AG N+A  +     +  SRT++Y+GV++DDLT+
Sbjct: 394 KRVRGLFLAGQINGTTGYEEAAAQGLLAGANAAASALARPPLTVSRTEAYLGVLVDDLTT 453

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE+R+SLRPDNAD RLT  G  +G +   R +R     Q       L
Sbjct: 454 LGTNEPYRMFTSRAEFRLSLRPDNADLRLTEKGYAMGLVSRERFERTRSIRQRLANASEL 513

Query: 478 LKSLVLTSKNLSST-SISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF---SSL 531
           L+ +   S    +   +   +    ++A+E L+    + + + + ++ P    +      
Sbjct: 514 LRDVKRGSNQWRAAMQLPLAKASVYKSAFEMLAISNDEITTERVCAVEPTVLGWIRDDRE 573

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPF 590
           + +RL+IE+ Y+     Q  E +E+   E   IP   DY S    LS E +EKL  ++P 
Sbjct: 574 LCQRLKIEALYSLSIEDQSREVEEVLRNESLRIPDAIDYLSKSLNLSFEEQEKLVKIQPQ 633

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTV 618
            +  AS+I+G+TP+++  L+ ++K++  
Sbjct: 634 TIAAASRIQGITPSSIVRLVKFVKQHEA 661


>gi|291461017|ref|ZP_06026473.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379412|gb|EFE86930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium periodonticum ATCC 33693]
          Length = 630

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/629 (37%), Positives = 360/629 (57%), Gaps = 14/629 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV 
Sbjct: 3   IMDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVT 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +I
Sbjct: 63  EIDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKNENISLI 122

Query: 121 QGEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           Q  V     E             +  +  +   +     +VL TGTFL+G I IG +   
Sbjct: 123 QDCVEEILVEDIKDRQNLSYEKKVIGVKTRLGLIYNTKAIVLATGTFLKGKIVIGDVTYS 182

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           AGR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T
Sbjct: 183 AGRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFT 242

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F E+  
Sbjct: 243 KKEKNNTVPTWLTYTSEETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPEKAK 302

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           HQIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +
Sbjct: 303 HQIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQ 362

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L+P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+++K    + +   R+++YIGV
Sbjct: 363 LYPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNASKKIKGEEPVIIDRSEAYIGV 422

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + R +   K I +
Sbjct: 423 LIDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDRIEFLEKAIND 482

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
                + LK++ ++    ++        ++  K   A E L   D S  +L +   +   
Sbjct: 483 VYMEINNLKNISVSMNEANNFLEKLGVEERFVKGVKASEILKIKDVSYDDLKTFL-NLND 541

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +   V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +SN  +  L+ +
Sbjct: 542 YEDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIDKNINYDDIKGISNIARAGLNEV 601

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P ++ +A++I G+T   + L++ ++ + 
Sbjct: 602 RPLSIGEATRISGVTSNDITLIIAHMNQK 630


>gi|29348677|ref|NP_812180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|298387045|ref|ZP_06996599.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 1_1_14]
 gi|81170521|sp|Q8A2N7|MNMG_BACTN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|29340582|gb|AAO78374.1| glucose-inhibited division protein A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298260195|gb|EFI03065.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 1_1_14]
          Length = 628

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/624 (41%), Positives = 365/624 (58%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  
Sbjct: 121 DTVCELLVENGEVVGLVTLWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L  S  +     GR+KTGTP R+D ++I +D  + Q  +     FSFM T     +Q++C
Sbjct: 181 LTESIARHGIAYGRMKTGTPVRIDARSIHFDLMDTQDGECDFHKFSFMNTSTRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ +P  + + I RPGYAIEYDY +P +L  +LE+K I
Sbjct: 301 TTQELYLNGFSSSLPMDIQIAALKKVPAFKDIVIYRPGYAIEYDYFDPTQLKHSLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT     LG   E R +      +    + +  K+
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYHLGLAREDRYQLMKTKKEALEQIVNFAKN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-----------K 527
             +    ++     +      +     E L+ P  +I+N+    P  +            
Sbjct: 481 YSMKPALINDALEKLGTTPLRQGCKLIEILNRPQITIENIAEHVPAFQRELEKATAADSD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++KL  +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQKLVKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|331246515|ref|XP_003335890.1| hypothetical protein PGTG_17721 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314880|gb|EFP91471.1| hypothetical protein PGTG_17721 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 692

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/625 (43%), Positives = 387/625 (61%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I+ ++DV+V+GGGHAG EAA+ AA+  + T L+T   ST+G MSCNP+ GG+GKG L+RE
Sbjct: 67  ISNNWDVVVLGGGHAGVEAASAAARTNSRTLLVTSNWSTVGEMSCNPSFGGIGKGTLIRE 126

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+  +  D AGI F++LN  KGPAV GPR Q DR LY+ A+QR+I SQ NL+V +
Sbjct: 127 IDALGGVCAQACDEAGIVFQMLNRSKGPAVYGPRAQMDRGLYKEAIQRQIKSQLNLEVKE 186

Query: 122 GEVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V     E             ++ + ++    + C  +V+ TGTFL G IHIG+     
Sbjct: 187 GTVTDLLLEDDPTQPGITSSRRVAGLKLESGETLNCKALVIATGTFLGGEIHIGRKTSAF 246

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+G+  S SL NS     F   R+KTGTP R+   +I +D    Q  D    PFSF   
Sbjct: 247 GRIGERSSTSLSNSLKNSGFKLARMKTGTPPRISKSSIHFDNLMVQQGDVPPKPFSFTNR 306

Query: 232 KITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            + +  +Q+ C  T T   TH I+ EN+  S+    ++   GPRYCPS+E K+ RF  R+
Sbjct: 307 TVKHANQQLCCWKTHTTKATHEIVQENLHLSSYVREEVH--GPRYCPSLEAKVTRFSHRD 364

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG ++D++YPNGIST +PE+ Q + +RTIPGLEKV +++PGY +EYD+I+P+
Sbjct: 365 SHMIWLEPEGFHSDLIYPNGISTTMPEDAQLKMMRTIPGLEKVEMVQPGYGVEYDHIDPR 424

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           EL  TLETK I GLFLAGQINGTTGYEEAAAQG++AGIN+  KS     +  +R DS+IG
Sbjct: 425 ELKNTLETKAIQGLFLAGQINGTTGYEEAAAQGVLAGINAGLKSRNALPLILTRADSFIG 484

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V++DDLTSKGV EPYRMFTSR+E+R++LR DNAD RLT    + G I +RR         
Sbjct: 485 VLVDDLTSKGVQEPYRMFTSRSEFRVALRVDNADLRLTEKARRCGVIDDRRWNILQDTES 544

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           + + L   L+S+ L  +  +   I  ++D   +TA++ L      ++ L  I P+     
Sbjct: 545 KIDRLILALQSISLPQQTWARHGIKVREDAVQKTAFDVLRVQGVKMELLKPIIPEIDAIE 604

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             +  R+++E+ Y     R     K +  +E  ++P   +YS L  LS+E ++KL+  +P
Sbjct: 605 EEIWRRVEVEALYRPIIKRYEQNVKYLIEDENMILPSSINYSELEYLSSEARQKLTESRP 664

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             L  A +++G+ P  L LL  +++
Sbjct: 665 LTLGVAQRLQGIDPGELILLRKHLR 689


>gi|157136155|ref|XP_001663678.1| glucose inhibited division protein a [Aedes aegypti]
 gi|108870028|gb|EAT34253.1| glucose inhibited division protein a [Aedes aegypti]
          Length = 644

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/620 (42%), Positives = 396/620 (63%), Gaps = 19/620 (3%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAG EA + AA++GA T LITHK STIG MSCNP+ GG+GKGHL+RE+DALDG+  R  D
Sbjct: 24  HAGTEACSAAARMGARTLLITHKRSTIGEMSCNPSFGGIGKGHLMREVDALDGVCARSCD 83

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK--- 131
            +G+Q++VLN ++GPAV GPR Q DR+LY+  +Q+E+    NL++++  V     E+   
Sbjct: 84  NSGVQYKVLNKRRGPAVWGPRAQIDRKLYKAEVQKELSETANLEIVEASVEDIILEREEG 143

Query: 132 ---NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              N I  I +++  ++   ++V+TTGTFLRG I+IG   +PAGR+GD P+  L  S   
Sbjct: 144 QSLNRIKGISLKNGDVVWTKSLVITTGTFLRGQINIGLKTMPAGRIGDEPAIGLAKSLED 203

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRT 245
             F   RLKTGTP R+   +I +D  E+   D   +PFSFM D++      Q++C +T T
Sbjct: 204 LGFRMSRLKTGTPPRIKASSINFDILERHPGDNPPVPFSFMNDRVWLNNEDQLDCFLTHT 263

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + + + I+  N+  +   + ++   GPRYCPSIE K++RFG +  HQI+LEPEG +++++
Sbjct: 264 SADVNDIVKRNLHCNRHVTEEL--TGPRYCPSIESKVLRFGGKT-HQIWLEPEGFDSELI 320

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNG+S  LPEE Q + +R + GLE+  + RPGY +EYD+++P+EL+ TLETK+  GLF 
Sbjct: 321 YPNGLSCTLPEEEQIKLVRCLRGLEEAELARPGYGVEYDFVDPRELYQTLETKRADGLFF 380

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA AQG++AG N+A K+ K   +  SRT+ Y+GV++DDLT+ G  EPYR
Sbjct: 381 AGQINGTTGYEEAGAQGILAGANAAAKTLKRKPLTISRTEGYLGVLVDDLTTLGTNEPYR 440

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+SLRPDNAD RLT  G ++G + E R +R     ++      LL  +   S
Sbjct: 441 MFTSRAEFRLSLRPDNADLRLTEKGYQIGLVSEERYQRMVSIREKLKMGIELLSDIKKGS 500

Query: 486 KNL-SSTSISFKQDGKTRTAYEFLSY--PDFSIQNLFSICPDARKF---SSLVIERLQIE 539
                   +   +    ++A+E L+    D   ++L  + P+   +     ++ ERL+IE
Sbjct: 501 NTWKEQLGLPLGKASIHKSAFEMLAITVEDIKTEDLCDLAPEVLGWIKDDRVLCERLKIE 560

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPFNLLQASKI 598
           + Y+     Q  E +E++  E+  IP+  DY S    LS E +EKL  ++P  +  AS+I
Sbjct: 561 ALYSLSIQEQAKEVEEVQRHEQLRIPRSIDYLSRSLNLSYEEQEKLVNIQPQTIAAASRI 620

Query: 599 EGMTPAALNLLLIYIKKNTV 618
           +G+TP+ +  L+ Y+K+  +
Sbjct: 621 QGITPSTIVRLVRYVKQQEM 640


>gi|294781804|ref|ZP_06747137.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481914|gb|EFG29682.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 1_1_41FAA]
          Length = 627

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/625 (37%), Positives = 359/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAALASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRKKMREKLEKNENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             +  +  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCVEEILVEDIKDRQNLSYEKKVIGVKTRLGLIYNTKAIVLATGTFLKGKIVIGDITYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSIFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ + +K+S I SG + ++GPR+CPSI+ K++ F E+  H
Sbjct: 241 KEKNNTVPTWLTYTSEETIEVVRDMMKYSPIVSGMVNTHGPRHCPSIDRKVLNFPEKAKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K    + +   R+++YIGV+
Sbjct: 361 YPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEEPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + R +     I   
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDRIEFLKNSINNV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++  + ++   S    ++  K   A E L   D +  +L +   +   +
Sbjct: 481 YTEINNLKNISISMNDANNFLESLGIEEKFVKGVKASEILKIKDVNYDDLKTFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   I K+ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIDKNINYDDIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|332299652|ref|YP_004441573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176715|gb|AEE12405.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 638

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/625 (41%), Positives = 365/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VRE
Sbjct: 14  MKTHFDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVRE 73

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G+++DAA IQ+R+LN  KGPA+  PR Q DR  +    + ++   + LD+ Q
Sbjct: 74  IDALSGYTGQMSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDRTDGLDLWQ 133

Query: 122 GEVAGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V             +V Q       + VVLT GTFL G++H GK  IP GR+ +  S+
Sbjct: 134 DFVVDIKFGAEDNKHLVVTQLGMTFTAAKVVLTAGTFLGGLMHFGKTMIPGGRISEPASH 193

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            +    +       R+KTGTPAR+DG+++ W   E+Q  DE    FSF+   +   RQ  
Sbjct: 194 GITECLVAAGHHADRMKTGTPARIDGRSVDWSLVEEQPGDEEAGRFSFLPMQRSQLRQRS 253

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLEPEG
Sbjct: 254 CYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLEPEG 313

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y NG S++LP +IQ + ++TIP L  V + RPGYAIEYD+ +P++L  TLE+K 
Sbjct: 314 EETNEYYLNGFSSSLPIDIQIRALQTIPALRDVQLYRPGYAIEYDFFDPRDLHHTLESKL 373

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL +KG
Sbjct: 374 VPGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLVLRRDEAYIGVLIDDLVTKG 433

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  +    L +L  
Sbjct: 434 VDEPYRMFTSRAEYRILLRQDNADLRLTPYAEQLGLATAERLSRLEQIKEGIATLDNLCA 493

Query: 480 SLVLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-------KFSS 530
           +  +  + ++    S+  K           L  P  S+  L +                 
Sbjct: 494 NYSVKPEEVNGYLASLGEKPLDFGTKLTTLLLRPHVSLSGLIAQLDGFATQVAGLIGDDE 553

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++ R +    Y  Y  R+   A+++   E  ++    DY  + AL  E +EKLS ++P 
Sbjct: 554 EILTRTETAIKYRGYIEREEQAAQKLHRLESLMLGDKLDYQQISALPIEAREKLSRIRPA 613

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G++P+ +N+LL+ + +
Sbjct: 614 TIAQAARIPGISPSDINILLVLLGR 638


>gi|256846685|ref|ZP_05552141.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
 gi|256717905|gb|EEU31462.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_36A2]
          Length = 627

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/625 (37%), Positives = 357/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKTALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             +  I  +   +     ++L TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSKNLSYEKKVIGIKTRLGIIYNAKAIILATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGVKIERYQTATPPRLDKKTIDFSQLEELKGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEKSINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    +    ++  K   A E L   D S  NL  +  +   +
Sbjct: 481 YMEINNLKNISVSMNEANRFLENLGIEERFVKGVKASEILKIKDVSYDNL-KVFLNLDDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|328699225|ref|XP_003240872.1| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 2
           [Acyrthosiphon pisum]
          Length = 659

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/634 (43%), Positives = 410/634 (64%), Gaps = 17/634 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ YDVIV+GGGHAG EA + AA++GAST L+THK S++G MSCNP+ GG+GKGHL+RE
Sbjct: 27  FSKQYDVIVVGGGHAGTEACSAAARMGASTLLVTHKKSSVGEMSCNPSFGGIGKGHLMRE 86

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-LSQENLDVI 120
           IDALDGL  ++ D +GI +++LN +KGPAV G R Q DR+LY++ MQ E+  +  NL++I
Sbjct: 87  IDALDGLCAKICDLSGIHYKILNRRKGPAVWGLRAQVDRKLYKMYMQAELFENTPNLNII 146

Query: 121 QGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           +G V     +  N  + +++++ ++IR   V+LTTGTFL G ++ G    P GR+   PS
Sbjct: 147 EGSVDNILLDNNNQCTGVLLENGTLIRTKCVILTTGTFLNGEMYSGMTVKPGGRINSKPS 206

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-- 237
             L N+  +  F+TGR+KTGTP R++ ++I +     Q  D+   PFSFM + +  +   
Sbjct: 207 IGLANTLKRLGFNTGRMKTGTPPRIEKQSINFTNLNYQSGDDLPTPFSFMNNSVWLKPED 266

Query: 238 -IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
            I+  +T TN + H+I+++N+  +     ++K  GPRYCPS+E K ++F +R  HQI+LE
Sbjct: 267 QIKSYLTYTNSKVHQIVIDNLSVNRHIKEEVK--GPRYCPSLESKSLKFRDR-HHQIWLE 323

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
            EG +++VVYPNG+S  LPE++Q + IR+I GLE       GY +EYDY++P+EL+PTLE
Sbjct: 324 IEGFDSNVVYPNGLSCTLPEDLQVKMIRSINGLENAQHYISGYGVEYDYVDPRELYPTLE 383

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR--KSNKLDCICFSRTDSYIGVMIDD 414
           TKKI  LF AGQINGTTGYEEAAAQG++AGIN+       ++  +  SRT++YIGV++DD
Sbjct: 384 TKKIGHLFFAGQINGTTGYEEAAAQGILAGINAGASVSVKQIFFLTLSRTEAYIGVLVDD 443

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT++G  EPYRMFT RAE+R+ LRPDNAD RLT  G  +GC+ + R  +           
Sbjct: 444 LTTQGTDEPYRMFTGRAEFRLHLRPDNADIRLTQKGYDIGCVSKTRYDQTLSIRSSLEEG 503

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDA---RKF 528
             LL S+  T      S  +   ++ +T+TA+E L   +   +++ L  I PD    +  
Sbjct: 504 IKLLTSVSQTMYKWKKSLGLKTSRNPETKTAFEILGLSNEGITLRQLEMILPDNFGGQFE 563

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSIL 587
            + + ERL+IE+ Y A T  Q  + + ++ ++  L+PKD DY+    ++S E  EKLS +
Sbjct: 564 DNRIRERLKIEALYQASTYDQQEDIERVEVDQSLLLPKDIDYTHTSLSISKEEIEKLSYI 623

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           +P  +  A +I G+ P+ +  LL YIK   + ++
Sbjct: 624 QPQTIGAAGRIPGIKPSTVLRLLYYIKNQKINIS 657


>gi|167764036|ref|ZP_02436163.1| hypothetical protein BACSTE_02419 [Bacteroides stercoris ATCC
           43183]
 gi|167698152|gb|EDS14731.1| hypothetical protein BACSTE_02419 [Bacteroides stercoris ATCC
           43183]
          Length = 638

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/630 (41%), Positives = 365/630 (57%), Gaps = 16/630 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 9   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +    +  + +  NL + Q
Sbjct: 69  IDALGGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKFIWTWREILENIPNLHIWQ 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +        R   VVLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 129 DTVQEILVENGEVTGLTTVWGVTFRAKCVVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQ 188

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+DG+++ ++  E Q  +     FSFM + + + +Q+ C
Sbjct: 189 LTESIARHGITYGRMKTGTPVRIDGRSVHYEDMEIQEGENDFHKFSFMNNGVRHLKQLPC 248

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN ETHRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 249 WTCFTNEETHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 308

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ IP    + I RPGYAIEYDY +P +L  TLETKKI
Sbjct: 309 TTQELYLNGFSSSLPMDIQIAALKKIPAFRDLVIYRPGYAIEYDYFDPTQLKHTLETKKI 368

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 369 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 428

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   E R +      +    +    +S
Sbjct: 429 DEPYRMFTSRAEYRILLRMDDADMRLTERAWKLGLAKEDRYELLKSKREAVTSIIEFTRS 488

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS-------- 529
             +     N     +      +     + ++ P  +++N+        R+          
Sbjct: 489 YSMKPALINPVLEQLGTTPLRQGCKLVDLINRPQVTLENMAEHVSAFRRELDKITEQDKV 548

Query: 530 ----SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
                 ++E  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL 
Sbjct: 549 ADRRDEIVEAAEILIKYEGYIGRERIIADKLARLESIKIKGRFDYNSIQSLSTEARQKLV 608

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            + P  + QAS+I G++P+ +N+LL+   +
Sbjct: 609 KIDPETIAQASRIPGVSPSDINVLLVLCGR 638


>gi|253568978|ref|ZP_04846388.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 1_1_6]
 gi|251840997|gb|EES69078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 1_1_6]
          Length = 628

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/624 (41%), Positives = 365/624 (58%), Gaps = 14/624 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  + + ++ +  NL + Q
Sbjct: 61  IDALGGQMGLVTDETAIQFRILNRSKGPAMWSPRAQCDRAKFIWSWREKLENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +V       +   +VLT GTFL G++H+G+ ++P GRM +  S  
Sbjct: 121 DTVCELLVENGEVVGLVTLWGVTFKAKCIVLTAGTFLNGLMHVGRHQLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L  S  +     GR+KTGTP R+D ++I +D  + Q  +     FSFM T     +Q++C
Sbjct: 181 LTESIARHGIAYGRMKTGTPVRIDARSIHFDLMDTQDGECDFHKFSFMNTSTRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ + +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCYTNEEVHRILRKGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ   ++ +P  + + I RPGYAIEYDY +P +L  +LE+K I
Sbjct: 301 TTQELYLNGFSSSLPMDIQIAALKKVPAFKDIVIYRPGYAIEYDYFDPTQLKHSLESKII 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QGL+AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGLIAGINAHINCHGGEAFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT     LG   E R +      +    + +  K+
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYHLGLAREDRYQLMKTKKEALEQIVNFAKN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-----------K 527
             +    ++     +      +     E L+ P  +I+N+    P  +            
Sbjct: 481 YSMKPALINDALEKLGTTPLRQGCKLIEILNRPQITIENIAEHVPAFQRELEKATAADSD 540

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
               ++E  +I   Y  Y  R+ + A+++   E   I   FDY+S+ +LS E ++KL  +
Sbjct: 541 RKEEILEAAEILIKYQGYIDRERMIAEKLARLESIKIKGKFDYASIQSLSTEARQKLMKI 600

Query: 588 KPFNLLQASKIEGMTPAALNLLLI 611
            P  + QAS+I G++P+ +N+LL+
Sbjct: 601 DPETIAQASRIPGVSPSDINVLLV 624


>gi|291320104|ref|YP_003515362.1| glucose inhibited division protein A [Mycoplasma agalactiae]
 gi|290752433|emb|CBH40404.1| Glucose inhibited division protein A [Mycoplasma agalactiae]
          Length = 613

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/619 (38%), Positives = 350/619 (56%), Gaps = 12/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G +T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGHNTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NL++++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSQLAYEYVLKQPNLELLE 120

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G        E      +++++  +I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEVIVDENGYFKGVLVENIGLIEAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKMPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETHRII ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHRIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + Y NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITYVNGLSTSMPIDVQELMIKSIPGLRNAKVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 HNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKDPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD+RL+    K G I +   ++     +  +     L +
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYKSGMISKEEYQKVLDKYKLIDDEIQRLNT 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             L+ K+  +   +        T    +S PD    ++    P         +E +    
Sbjct: 481 TYLSGKSDVALKYNITNGS---TLLNVISRPDVDPSDIIPNFP--------YLEEITTMV 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q  +A +    E   IP+D +Y  +  ++ E ++K   ++P  + QAS+I G
Sbjct: 530 RLHGYIEKQKSDANKAVRLENLKIPEDLNYFDVKNIAIEARQKFEKIRPATIGQASRISG 589

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA + +L+ +++    K
Sbjct: 590 INPADIQMLMFHLESRHKK 608


>gi|254302387|ref|ZP_04969745.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322579|gb|EDK87829.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 628

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/625 (37%), Positives = 357/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG  TAL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKTALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYQYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             ++ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNSSYIKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDITYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ E +++S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSEETIEVVREMMEYSPIVSGMVNTHGPRHCPSIDRKVLNFPDKAKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + +RTI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILRTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE KKISGLF +GQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKKISGLFFSGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DN   RL     ++G I + + +   K I   
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNTFMRLFEKIKEVGIIDKDKIEFLEKSINNV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    ++   S    ++  K   A E L   D S  +L     +   +
Sbjct: 481 YMEINNLKNISVSMNEANNFLESLGVEERFVKGVKASEILKIKDVSYDDLKGFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ DY  +  +SN  +  L  ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENIDYDEIKGISNIARAGLDEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|41058547|gb|AAR99253.1| glucose-inhibited division protein A [Candidatus Blochmannia
           sansabeanus]
          Length = 591

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/585 (46%), Positives = 365/585 (62%), Gaps = 7/585 (1%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNPAIGG+GKGHLV+EID++ G M    D AGIQFR+LN  KG AVRG R QAD+
Sbjct: 1   LGQMSCNPAIGGIGKGHLVKEIDSMGGAMAYAIDNAGIQFRILNKSKGAAVRGTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTGTFLR 159
            LYR  ++  +  Q+ L +IQ  V      KN I  + V +    I  ++VVLTTGTFL 
Sbjct: 61  MLYRQMIRNVLEYQDFLLIIQASVEDLIISKNKIVGVFVPKIGMKINATSVVLTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G +HIG      GR GD  S+SL      +F    GRLKTGT  R+  K I +D  + Q+
Sbjct: 121 GKMHIGMNNFIGGRAGDIESSSLLSKRLKEFSLRVGRLKTGTSPRVHSKGINFDVLQAQY 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSF+ ++K   +Q+ C IT TN +TH I+  N+  S I +G I+   PRYCPS
Sbjct: 181 SDNPVPVFSFIGSEKQHPKQVPCYITYTNDKTHEIVRSNLNQSPIQTGLIEGTAPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK+ RF +RN HQIFLEPEGL T  +Y NGIST+LP  +Q Q I++I GLE  +IIRP
Sbjct: 241 IEDKVTRFSDRNAHQIFLEPEGLTTSEIYLNGISTSLPFYVQIQIIQSIQGLENAHIIRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ +P++L  TLE+K ISGLF +GQINGTTGYEEAAAQGL+AGIN+AR S   +
Sbjct: 301 GYAIEYDFFDPRDLKLTLESKFISGLFFSGQINGTTGYEEAAAQGLLAGINAARFSQNKE 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  +Y+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG + 
Sbjct: 361 GWYPRRDQAYLGVLVDDLCTHGTEEPYRMFTSRAEYRLSLREDNADLRLTAIARQLGLVD 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFKQDGK-TRTAYEFLSYPDFS 514
           E R K F    +     R  L++  +     +    +   K       +  E L  P+ +
Sbjct: 421 ELRWKNFCLKKENIEKERQRLRNTYIVPYSTDAKQLNSFIKTPLIYEVSGEELLRRPEIN 480

Query: 515 IQNLFSICPDAR-KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
             NLF +   +       V E+++I+  Y  Y   Q  E +   + E  L+P + DY+ +
Sbjct: 481 YTNLFKLKSFSSFMLDRQVYEQIEIQIKYEGYIRHQQKEIERNIYNEHILLPTNIDYNII 540

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             LS E+ +KL+  KP+++ QAS+I G+TPAA++ LL+++KK  +
Sbjct: 541 SGLSKEVIDKLNDYKPYSIGQASRISGITPAAISNLLVWLKKKGL 585


>gi|221640726|ref|YP_002526988.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
           [Rhodobacter sphaeroides KD131]
 gi|221161507|gb|ACM02487.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Rhodobacter sphaeroides KD131]
          Length = 597

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/597 (52%), Positives = 402/597 (67%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G   ALIT + S +G MSCNPAIGGLGKGHLVREIDALDG+MGR AD AGIQFR+LN K
Sbjct: 1   MGVRVALITLRMSGLGVMSCNPAIGGLGKGHLVREIDALDGIMGRAADEAGIQFRLLNRK 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KGPAV+GPR QADR LYR A+QR +  Q  L V++GEV         +  + + D + + 
Sbjct: 61  KGPAVQGPRAQADRRLYREAVQRLLAEQPGLTVVEGEVVDLQVIGGRVQGVSLADGTSVG 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LT+GTFL GVIHIG  + P GRMGD PS  L     +     GRLKTGTP RLDG
Sbjct: 121 AGRVILTSGTFLNGVIHIGDQRRPGGRMGDDPSQRLAAVLGELSLARGRLKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           +TI W + E Q  DE  + FSF+      RQI CGIT TN  TH+I+ +N+  SA+Y G 
Sbjct: 181 RTIRWTELEMQPGDEDPVVFSFLNRAPKARQIACGITHTNARTHQIVRDNLSRSAMYGGH 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKIVRF ++  HQ+FLEPEGL+ D VYPNGIST+LP E+Q  ++ TI
Sbjct: 241 IEGVGPRYCPSIEDKIVRFADKEEHQVFLEPEGLDDDTVYPNGISTSLPAEVQEAYVHTI 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE V I++PGYAIEYDY +P+EL PTLE K ++GL+ AGQINGTTGYEEAAAQGL AG
Sbjct: 301 AGLEDVRILQPGYAIEYDYFDPRELRPTLEVKALAGLYFAGQINGTTGYEEAAAQGLAAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+A    + + I FSR+ SY+GVMIDDLT++GV EPYRMFTSRAE+R+SLR DNAD RL
Sbjct: 361 LNAALSIREREPIYFSRSGSYLGVMIDDLTTRGVTEPYRMFTSRAEFRLSLRADNADQRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           TPIG+ LGC+ E R+  F++  +     + LL+    T   L+   I   QDG  RTA+ 
Sbjct: 421 TPIGLDLGCVSEARRDSFSRKREMLEKGKGLLECSTFTPSQLNDLGIKVSQDGVRRTAFA 480

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            ++Y D +   +             + ++L  +  YA +  RQ  EA  +K +E   IP 
Sbjct: 481 VMAYGDEAAVAVEKGVEGYSDLPEEIRQQLAKDGIYAQFILRQEEEAAALKRDEAIRIPA 540

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           +FDY+ L  LS+ELK KL   KP  + QA+++EGMTP+AL L+L  ++++  +   +
Sbjct: 541 EFDYAPLSGLSSELKAKLMRAKPSTIAQAAQLEGMTPSALTLILARLRRSGREATAV 597


>gi|257462447|ref|ZP_05626860.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D12]
 gi|317060107|ref|ZP_07924592.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. D12]
 gi|313685783|gb|EFS22618.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium sp. D12]
          Length = 615

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/614 (39%), Positives = 358/614 (58%), Gaps = 4/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAGCEAA  +A+LG  TA+IT    +I  MSCNP+IGG GK +LV EID
Sbjct: 2   QEFDIIVVGGGHAGCEAALASARLGLKTAMITLYLDSIAMMSCNPSIGGPGKSNLVTEID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M +  D   +Q + LN  KGPA R  R QAD+ LYR+ M+R +   ENL ++Q  
Sbjct: 62  ILGGEMAKHTDHFNLQLKHLNESKGPAARVTRGQADKFLYRIHMRRVLEHTENLHLLQDC 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   IS +  +     +   V+L TGTFL+G + IG +   AGR G+S +  L 
Sbjct: 122 VEEVLVENGHISGVKTRLGIQYKAKAVILCTGTFLKGKVVIGDIVYSAGRQGESSAEKLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +         R +T TP RLD K+I + K ++   +E    FS  T K  N+ +   +T
Sbjct: 182 ENLRALGLKVERYQTATPPRLDKKSIDFSKLKELHGEEYPRYFSIFTQKKKNKTVPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +T     E +++S I SG I+++GPR+CPSI+ K++ F ++  HQIFLE E L++D
Sbjct: 242 YTNEKTLEKTKEMLQYSPIVSGIIETHGPRHCPSIDRKVLNFPDKTEHQIFLELESLDSD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q + + TI GLE   I+R GYA+EYDY+   +L+P+LE KKISGL
Sbjct: 302 EIYVNGFTTAMPPFAQEKILHTICGLEHAKIMRYGYAVEYDYVPAFQLYPSLENKKISGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+ RK  +   I   R+++YIGVMIDDL  K   EP
Sbjct: 362 FCAGQINGTSGYEEAAAQGLIAGINAGRKILQKSPIFIDRSEAYIGVMIDDLIHKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+  SR+EYR+ LR DNA  RL     ++G +   +     + I++       LK++ +
Sbjct: 422 YRVLPSRSEYRLHLRFDNAFMRLYEKTKEIGLLSPEKISFLEEAIEKVIQEVKRLKNISI 481

Query: 484 TSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           + +  +    +        K     + L   + S  +L  +  +  +    V  +++   
Sbjct: 482 SMQEANQFLKNKNCMDFFSKGVKIADILKRKEISYLDLEELI-ELPECPEFVRNQIETIL 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  +  R+  +  + K  E++LIP++FD+SS+  +SN     L  +KP ++ +A +I G
Sbjct: 541 KYEIFMEREEKQILKFKQLEQQLIPQNFDFSSVKGISNIALSGLLEVKPLSIGEAGRISG 600

Query: 601 MTPAALNLLLIYIK 614
           +T   L LL+ +++
Sbjct: 601 VTGNDLALLIAHLR 614


>gi|115386316|ref|XP_001209699.1| mitochondrial translation optimization protein [Aspergillus terreus
           NIH2624]
 gi|114190697|gb|EAU32397.1| mitochondrial translation optimization protein [Aspergillus terreus
           NIH2624]
          Length = 685

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/635 (43%), Positives = 385/635 (60%), Gaps = 23/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  SRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+   E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELTGTEGLSIVEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVVITTGTFLGGEIHIGLKVFPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ + 
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDKKTINFAALEVQRGDSPPQPFSYLNNT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN   H II  N+  S      +   GPRYCPS+E KI+RF +++
Sbjct: 275 VQVGDEGQLTCWMTHTNEAAHDIIRANLDKSVHIRETV--RGPRYCPSLESKIIRFKDKH 332

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +PE+ Q   +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 RHLIWLEPEGFAPNDVIYPNGISMTVPEDAQFAMLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L+P+LETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLWPSLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRPPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +  K G + ++R   F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTRMARKAGIVSDKRWHHFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            +   L++LL +  ++S   S      + D   R+A + L   +  +  L          
Sbjct: 513 AQIQELQTLLANTRMSSSAWSRRGFKARTDTSIRSALDLLCLDEVDVDALIPHIESPSGV 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F+  +  R+ IE  YA Y  RQ   A++   +E  L+P   DYS +  +S E +
Sbjct: 573 AYTPASFAPEIRTRVAIERRYAPYIARQETAARKFLQDENLLLPAGLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + L  ++P ++  A +IEG+TPA    LL +++K+
Sbjct: 633 QALERVRPLSVGMARRIEGVTPAGALRLLAHVRKH 667


>gi|218131739|ref|ZP_03460543.1| hypothetical protein BACEGG_03360 [Bacteroides eggerthii DSM 20697]
 gi|317474644|ref|ZP_07933918.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides eggerthii 1_2_48FAA]
 gi|217986042|gb|EEC52381.1| hypothetical protein BACEGG_03360 [Bacteroides eggerthii DSM 20697]
 gi|316909325|gb|EFV31005.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 624

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/624 (41%), Positives = 366/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   ++ +        R   +VLT GTFL G++H+G+  +P GRM +  S  
Sbjct: 121 DTVQEILVENGEVTGLTTLWGVTFRAKCIVLTAGTFLNGLMHVGRTMLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+DG+++ ++  + Q  +     FSFM + + + +Q+ C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDGRSVHYEDMDVQDGENDFHKFSFMDNGVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ + ++ IP    + I RPGYAIEYD+ +P +L  TLETKKI
Sbjct: 301 TTQELYLNGFSSSLPMDIQIEALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG     R +      +    + +  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAWKLGLAKNDRYELLRSKREAVTNIINFTRN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +++N+        R+          
Sbjct: 481 YSMKPALINPVLEQLGTTPLRQGCKLIDLINRPQITLENMAQHVGAFHRELDKITERKDE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  + P  
Sbjct: 541 IIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLVKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 601 IAQASRIPGVSPSDINVLLVLCGR 624


>gi|34763012|ref|ZP_00143988.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887313|gb|EAA24407.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 627

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/625 (37%), Positives = 357/625 (57%), Gaps = 14/625 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   +N+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTQNISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             ++ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNSSYEKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGVKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEKSINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    +    ++  K   A E L   D S  NL  +  +   +
Sbjct: 481 YMEINNLKNISVSMNEANRFLENLGIEERFVKGVKASEILKIKDVSYDNL-KVFLNLDDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYI 613
           P ++ +A++I G+T   + L++ ++
Sbjct: 600 PLSIGEATRISGVTSNDITLIIAHM 624


>gi|332824605|ref|XP_003311450.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 1 [Pan
           troglodytes]
          Length = 692

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/641 (43%), Positives = 400/641 (62%), Gaps = 26/641 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+   S                     A + L Y +  + +L    P+  +K+
Sbjct: 513 EGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
              +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAAMNE 673


>gi|325095068|gb|EGC48378.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus H88]
          Length = 673

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/636 (44%), Positives = 389/636 (61%), Gaps = 25/636 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REIDAL
Sbjct: 12  YDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREIDAL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+V 
Sbjct: 72  DGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGKVG 131

Query: 126 GFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G++
Sbjct: 132 DIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLGEA 191

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
            +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++    
Sbjct: 192 ATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDVDD 251

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN   H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H I+
Sbjct: 252 EDQLPCWSTYTNEAAHQIVRDNLDKSIHIRETVK--GPRYCPSLESKIIRFKDKQRHMIW 309

Query: 295 LEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           LEPEG   D V YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L P
Sbjct: 310 LEPEGFKPDEVIYPNGISMTIPADAQLAVLRTVAGLENVRMLQAGYGVEYDYVDPRSLRP 369

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M+D
Sbjct: 370 TLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIMVD 429

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+EYRI+ R DNAD RLT  G ++G +G++R + F++   +   
Sbjct: 430 DLITKGVSEPYRMFTSRSEYRIATRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQITE 489

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---------- 523
           L++LL++    S   S        D   R+A++ L   D SI ++               
Sbjct: 490 LQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSGKA 549

Query: 524 -DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
             A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E + 
Sbjct: 550 YTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEERA 609

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            L  ++P ++  A +IEGMTP A   LL+Y+++ T 
Sbjct: 610 ALEKVRPESIGMARRIEGMTPVAALKLLVYVRRTTA 645


>gi|154494270|ref|ZP_02033590.1| hypothetical protein PARMER_03621 [Parabacteroides merdae ATCC
           43184]
 gi|154085954|gb|EDN84999.1| hypothetical protein PARMER_03621 [Parabacteroides merdae ATCC
           43184]
          Length = 625

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/625 (40%), Positives = 364/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AA +G+ T LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MTFNYDVIVVGAGHAGCEAAAAAANMGSKTLLITMDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR+Q+DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGIVTDRTAIQFRMLNQSKGPAMWSPRSQSDRARFIECWRGILENLPNLYIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     + N +  +           +VVLT GTFL G++HIG+ +I  GR+ +  +  
Sbjct: 121 DTVRELLLDGNTVCGVKTYMGVEFHAKSVVLTNGTFLNGLMHIGRTQIRGGRIAEPAATG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L    +     + R+KTGTP R+D +++ +D+  +Q  +     FS+M T     +Q+ C
Sbjct: 181 LTEQLVSLGIKSERMKTGTPVRIDARSVHFDEMAEQPGENDFHKFSYMDTSHRVLKQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T TN   H ++ E +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTTFTNEACHAVLREGLPDSPLYNGQIQSIGPRYCPSIETKIVTFADKPQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T   Y NG S++LP +IQ + ++ IP    + I RPGYAIEYD+ +P +L   LETK I
Sbjct: 301 TTQEYYLNGFSSSLPLDIQLRALQQIPAFRDIQIYRPGYAIEYDFFDPTQLHHNLETKLI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGTTGYEEA  QGLVAGIN+    +  D     R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQINGTTGYEEAGGQGLVAGINAHINCHGGDPFVLGRDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT     LG   + R     +     + + S  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTEKSYHLGLAKQDRYDLLKEKKASRDAIISFAEN 480

Query: 481 LVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFS-------S 530
             +  + ++S   ++            E +  P  +++N+  + P  R +          
Sbjct: 481 YSIKPQYINSGLEALGTTPLAHGCKLIELIPRPQITLENIAELVPAFRTELDKVPVSRKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +IE  +I   Y+ Y  R+ I A +I   E   I   FDY+++ +LS E ++KL+ + P 
Sbjct: 541 EIIEAAEILIKYSGYIRREQIIADKINRLENIHIKGKFDYNAIQSLSTEARQKLTRIDPD 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P+ +N+LL+ + +
Sbjct: 601 TIAQASRIPGISPSDINILLVMLGR 625


>gi|17149039|gb|AAL35894.1| MTO1-like protein [Homo sapiens]
          Length = 692

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/639 (43%), Positives = 398/639 (62%), Gaps = 23/639 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+ID
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLID 452

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R         
Sbjct: 453 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLE 512

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+   S                     A + L Y +  + +     P+  +K+
Sbjct: 513 EGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSCTKAVPEPLKKY 572

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 573 TKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 632

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
              +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 633 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 671


>gi|328780265|ref|XP_394417.4| PREDICTED: protein MTO1 homolog, mitochondrial-like isoform 1 [Apis
           mellifera]
          Length = 659

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/629 (44%), Positives = 398/629 (63%), Gaps = 13/629 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DVI+IGGGHAG EA A AA++GA T L+THK STIG MSCNP+ GG+GKG+L+REI
Sbjct: 34  QHKFDVIIIGGGHAGTEACAAAARMGAKTLLVTHKKSTIGEMSCNPSFGGIGKGNLMREI 93

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+  R+ D +GI + +LN  KGPAV G R Q DR+LY+  +Q E+ +   L + + 
Sbjct: 94  DALDGVCCRICDLSGINYTILNRSKGPAVWGYRAQIDRKLYKKHLQEELFNTPGLQICES 153

Query: 123 EVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            V       +      I++++ + I    VV+TTGTFL+G I+IG  K PAGR+GD PS 
Sbjct: 154 SVEDLIIHGDSPKCCGIILKNGTKIYSDAVVITTGTFLKGQINIGLEKRPAGRLGDEPSI 213

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
            L N+     F  GRLKTGTP R++  T+ + K + +F D+   PFSFM + +     +Q
Sbjct: 214 GLANTLENIGFRMGRLKTGTPPRIEKSTVDFSKCDIRFPDKVSTPFSFMNETVWLPVEKQ 273

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T  +  +II +N+  +   + +I   GPRYCPSIE KI++F   + H I+LEP
Sbjct: 274 LNCYLTYTTEKVEKIIKDNMHCNLHITEEIC--GPRYCPSIESKILKFKG-HKHPIWLEP 330

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ ++YP G+S  LP E Q + I+ IP LE   +++PGY +EYDYI+P+EL  TLET
Sbjct: 331 EGLDSPLIYPAGLSCTLPAEKQEELIKCIPALENAKMVKPGYGVEYDYIDPRELNVTLET 390

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+ GLFLAGQINGTTGYEEAAAQG+VAG+N+A K    + +  SRT+ YIGV+IDDL +
Sbjct: 391 KKVPGLFLAGQINGTTGYEEAAAQGIVAGVNAAAKVLNKNLLIISRTEGYIGVLIDDLIT 450

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +G  EPYRMFTSRAEYR+ LRPDNAD RLT  G ++GC+ E R K+    + +      L
Sbjct: 451 QGTNEPYRMFTSRAEYRLVLRPDNADQRLTKKGYEIGCVSEERMKKTETILSKLEESIQL 510

Query: 478 LKSLVLTSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA---RKFSSLVI 533
            K+ V +     +       ++   ++A++ L     SI  +  + PD        S+++
Sbjct: 511 FKNEVHSDSKWKNLFGFKHTKNTNVQSAFDLLRNNMISIDMIIKVLPDRFGHLAQDSIIL 570

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNL 592
           ER++IE+ YA        E  EI+  E+ +IP   DY+     LS E KEK S +KP+ +
Sbjct: 571 ERIKIEAIYAPSIKGLQEEIDEIRKNEQMIIPSSIDYNMPQLNLSIEEKEKFSEIKPYTI 630

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLN 621
             A++I G+TP A+  L+ YI+KN + + 
Sbjct: 631 AAATRISGITPCAILRLIHYIRKNELNIK 659


>gi|32265512|ref|NP_859544.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter hepaticus ATCC 51449]
 gi|81170547|sp|Q7VK79|MNMG_HELHP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|32261560|gb|AAP76610.1| glucose inhibited division protein A [Helicobacter hepaticus ATCC
           51449]
          Length = 629

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/629 (42%), Positives = 372/629 (59%), Gaps = 14/629 (2%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           VIGGGHAG EA+ V+AK+GA T LIT     I   SCNPA+GGLGKGHLV+EIDAL G+M
Sbjct: 2   VIGGGHAGVEASIVSAKMGAKTHLITLLIQNIALASCNPAVGGLGKGHLVKEIDALGGVM 61

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
           G + D  GIQFR+LN  KGPAVRG R Q D + Y +  +   L+  NL + Q  V     
Sbjct: 62  GVITDKCGIQFRILNASKGPAVRGTRAQIDMDRYSIFAKEIALNTPNLTISQESVESLIY 121

Query: 130 EK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           E+      I+  +            V+LTTGTFLRG++HIG+ K+  GR G+    +L N
Sbjct: 122 EQDSKGRYIVKGVTTNIGKTYFAKKVILTTGTFLRGLVHIGETKLQNGRFGEMSPQNLSN 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           S        GRLKTGT AR+DG++I +   E    DE+   FS+ T   +  Q+ C +T 
Sbjct: 182 SLQDMGLTLGRLKTGTCARIDGRSIDFSALEIHNGDEKPPHFSYKTINFSPTQLPCFVTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH+II +N   + +++G I+  GPRYCPSIEDK+ RF +++ HQ+FLEP+      
Sbjct: 242 TNENTHKIIRDNFHRAPLFTGQIEGVGPRYCPSIEDKVNRFADKSRHQLFLEPQTQEAVE 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
            Y NG+ST+LP ++Q   I +I GLE  +I R GYAIEYDY+ P EL+ TLETKK + LF
Sbjct: 302 YYINGLSTSLPIDVQEAVIHSIKGLENAHITRYGYAIEYDYVEPTELYHTLETKKCANLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQG++AGIN+            +R ++YIGVMIDDL +KG  EPY
Sbjct: 362 LAGQINGTTGYEEAAAQGIMAGINATLSLQNKS-FTLARNEAYIGVMIDDLVTKGTKEPY 420

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+FTSRAEYR+ LR DNA  RL     K G I + R  +            + L++  +T
Sbjct: 421 RVFTSRAEYRLLLREDNAYLRLGTYAYKFGLIDKVRYTQIMADKTHIEHTINYLQNHHIT 480

Query: 485 SKNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSI-----CPDARKFSSLVIERL 536
             + + T   S+              +   +     L ++       D    S L IE++
Sbjct: 481 PSSSNLTMLASLGLPPISDKALLIHIVGREELDCALLRTLLTHLGITDVESMSDLAIEQI 540

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
            IES Y  Y  +Q  +  +++   +  IP+DF + ++P LS E+ EKL    P +L +A+
Sbjct: 541 FIESKYFDYIQKQKQQIGQMRQMLQVEIPRDFIFDNIPGLSLEVIEKLKKFTPKSLFEAN 600

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
           +I G+TPA++++L +YI  +  K ++I++
Sbjct: 601 EISGITPASIDVLHLYIHLHHKKKSQILV 629


>gi|255010265|ref|ZP_05282391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
 gi|313148060|ref|ZP_07810253.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
 gi|313136827|gb|EFR54187.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis 3_1_12]
          Length = 625

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/621 (41%), Positives = 366/621 (58%), Gaps = 11/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +    +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWTWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    +       +VLT GTFL G++H+GK K+P GRM +  S  
Sbjct: 121 DTVKEIIVENGEVVGLKTFWDVTFHAKCIVLTAGTFLNGLMHVGKTKLPGGRMAEPASYE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C
Sbjct: 181 LTESIAKHGVEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H I+   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEVHDILRNGLSDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP +IQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI
Sbjct: 301 TTQELYLNGFSSSLPMDIQIKALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 RNLFFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R        +    + +  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAIESIVNFARN 480

Query: 481 LVLTSKNLSSTS--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFS----S 530
             + +  ++     +            + ++ P  +I+N+    P    +  K +     
Sbjct: 481 YSIKAALINDALEKLGTTPLRHGCKLIDLINRPQITIENISEHIPAFKRELEKITDERKD 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y GR+ I A ++   E   I   FDY +L +LS E ++KL  + P 
Sbjct: 541 EILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDNLQSLSTEARQKLKKIDPE 600

Query: 591 NLLQASKIEGMTPAALNLLLI 611
            + QAS+I G++P+ +N+LL+
Sbjct: 601 TIAQASRIPGVSPSDINVLLV 621


>gi|329956355|ref|ZP_08296952.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides clarus YIT 12056]
 gi|328524252|gb|EGF51322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/624 (41%), Positives = 363/624 (58%), Gaps = 10/624 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDKTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +        R   VVLT GTFL G++H+G   +P GRM +  S  
Sbjct: 121 DTICEILVENGEVVGLTTLWGVTFRSKCVVLTAGTFLNGLMHVGHTMLPGGRMAEPASYQ 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +     GR+KTGTP R+DG+++ ++  + Q  +     FSFM + + + +Q+ C
Sbjct: 181 LTESIARHGITYGRMKTGTPVRIDGRSVHYEDMDIQDGENDFHKFSFMNNGVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HRI+ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHRILREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP  IQ + ++ IP    + I RPGYAIEYD+ +P +L  TLETKKI
Sbjct: 301 TTQELYLNGFSSSLPMNIQIEALKKIPAFRDLVIYRPGYAIEYDFFDPTQLKHTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG   + R +      +    +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAWKLGLAQKDRYELLRSKREAVTNIIEFTRN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +++N+        R+          
Sbjct: 481 YSMKPTLINPVLEQLGTTPLRQGCKLIDLINRPQVTLENMAEHVSAFRRELDKITDRKDE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ I A ++   E   I   FDY+S+ +LS E ++KL  + P  
Sbjct: 541 IIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYNSIQSLSTEARQKLVKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLIYIKK 615
           + QAS+I G++P+ +N+LL+   +
Sbjct: 601 IAQASRIPGVSPSDINVLLVLCGR 624


>gi|294055630|ref|YP_003549288.1| glucose-inhibited division protein A [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614963|gb|ADE55118.1| glucose-inhibited division protein A [Coraliomargarita akajimensis
           DSM 45221]
          Length = 638

 Score =  668 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/643 (39%), Positives = 366/643 (56%), Gaps = 52/643 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ YDVI+ G GHAGCEAA  AA++GAST ++T    TI  MSCNPAIGG  KGH+VREI
Sbjct: 10  NQPYDVIICGAGHAGCEAALAAARMGASTLMLTGNLDTIAQMSCNPAIGGQAKGHIVREI 69

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D   IQFR+LN  KGPAV+ PR Q D++ Y+  M+  I  Q NLD+ Q 
Sbjct: 70  DALGGEMAVNTDTTAIQFRLLNATKGPAVQAPRAQCDKKAYQYRMKHVIELQPNLDLFQA 129

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V G       +  +    +      TVV+TTGTFLRG++H+G+     GRMGD  +  L
Sbjct: 130 TVEGLIYRSGRVVGVRTNLDVEFYGHTVVVTTGTFLRGLMHVGQNMNEGGRMGDFSAKGL 189

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK---------- 232
             SF++   +  RLKTGTPAR+ G +I ++  E+Q  D     F+F   +          
Sbjct: 190 SGSFLEAGIELERLKTGTPARILGSSINFEGLEEQEGDALPTLFAFYDTRGVDDVFHVEH 249

Query: 233 ----------------------ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
                                     Q+ C +T T+ ET  ++ EN+  SA+YSG+I+  
Sbjct: 250 SSDAERALFHVEHSGQRKLGWAPGTDQVSCYMTYTSAETQSVVHENLHRSAMYSGEIEGT 309

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK VRF +++ H +FLEPEG NT+  Y NG+ST+LP ++Q   +R++ GLE
Sbjct: 310 GPRYCPSIEDKFVRFKDKDRHMLFLEPEGRNTNEWYINGLSTSLPFDVQLAMLRSVQGLE 369

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           KV+++RP YA+EYD+  P +L+P+LE+K++  LF AGQINGT+GYEEAA QGLVAG+N+ 
Sbjct: 370 KVHMLRPAYAVEYDFAPPTQLYPSLESKQVENLFFAGQINGTSGYEEAAGQGLVAGVNAV 429

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
           +K   L+ +   R + Y+GV+IDDL +KG  EPYRMF+SRAE+R+     +A+ RL    
Sbjct: 430 QKLRGLEPMVLKRHECYLGVLIDDLVTKGTKEPYRMFSSRAEHRLLFNHPSAELRLKHHS 489

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
             +G +   R +R     +        L+S                 D   RT      +
Sbjct: 490 SAMGLVDPERMQRIEAKDRAIRSWVDRLES--------ERVGGQLYGDIVRRT-RSVSDF 540

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           PD           D +     V + +    ++  Y  R+  + ++++  +K LIP DFD+
Sbjct: 541 PD-----------DLKALPREVKDEVMYRVAFRGYLEREAKQIEKMRHIDKILIPTDFDF 589

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
             +  L NE  EKL+ + P  L QA +I G+ PA +++L++Y+
Sbjct: 590 RKVRGLRNESAEKLAAISPRTLGQAGRISGVNPADISILMVYL 632


>gi|330935619|ref|XP_003305052.1| hypothetical protein PTT_17795 [Pyrenophora teres f. teres 0-1]
 gi|311318085|gb|EFQ86844.1| hypothetical protein PTT_17795 [Pyrenophora teres f. teres 0-1]
          Length = 692

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/623 (46%), Positives = 395/623 (63%), Gaps = 13/623 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDVIVIGGGHAGCEA+A AA+ GA TALIT     +G  SCNP+ GG+GKG ++REI
Sbjct: 38  ERPYDVIVIGGGHAGCEASAAAARSGARTALITPSVHNLGVCSCNPSFGGIGKGTMIREI 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M++EIL  + L V+QG
Sbjct: 98  DALDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKEYMKKEILGYKGLSVVQG 157

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            VA    +++           I+ + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 158 SVADIIVDRSQEKGSKGQYGRITGVRLESGEIIPTENVVITTGTFLGGEIHIGLEAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S     F  GRLKTGTP RLDG TI +   E Q  D   +PFS++ ++
Sbjct: 218 RMGEAATFGLSKSLKDAGFTLGRLKTGTPPRLDGNTIDYKVLEAQEGDNPPMPFSYLNER 277

Query: 233 IT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +   +Q+    TRTN  TH II +N+  S      +K  GPRYCPS+E K++RF ++  H
Sbjct: 278 VQVEKQLLNHETRTNEATHDIIRQNLDKSIHIRETVK--GPRYCPSLESKVIRFADKTSH 335

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            I+LEPEG N +VVYPNGIS  +P ++Q+  ++TI GLE V +++PGY +EYDY++P+ L
Sbjct: 336 IIWLEPEGFNNNVVYPNGISCTVPADVQNTMLKTIKGLENVTMLQPGYGVEYDYVDPRHL 395

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S   + +  +R D YIG+M
Sbjct: 396 RSTLETKNISGLFLAGQINGTTGYEEAAGQGIIAGINAGLRSLGKEPMTLTRADGYIGIM 455

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYR+S R DNAD RLT +G   G I + R K F+   ++ 
Sbjct: 456 IDDLITKGVSEPYRMFTSRSEYRMSARADNADVRLTSLGRAAGVISDARWKAFSDEAEQM 515

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
             L  LL+   +   + +      + D   R+AY+ L  P+ + Q+L  +  +   F   
Sbjct: 516 EALTKLLQDKTMGWTDWNKHGFKVRNDSTKRSAYDLLRLPNTTPQSLLPLIAEISCFPQH 575

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + +R+ I ++YA Y   Q +       +E   +P D DY S+  LS E K  L + +P +
Sbjct: 576 IQDRVHINATYAPYVEYQAVSQARWLKDENLKLPDDLDYESIFGLSFEEKRALEVARPES 635

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           +  A ++EG+TP     LL Y++
Sbjct: 636 VGMARRVEGVTPTGALRLLQYVR 658


>gi|256027560|ref|ZP_05441394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D11]
 gi|289765519|ref|ZP_06524897.1| glucose inhibited division protein A [Fusobacterium sp. D11]
 gi|289717074|gb|EFD81086.1| glucose inhibited division protein A [Fusobacterium sp. D11]
          Length = 625

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/626 (37%), Positives = 357/626 (57%), Gaps = 14/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  + +LG   AL+T    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASTRLGNKVALMTLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKIENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             +  I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNSSYEKKVIGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFFQLEELKGEEHPRYFSIFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ +T  +I E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSEKTIEVIKEMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKTKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G + + + +   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDKDKIEFLEKAINDV 480

Query: 472 NFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
               + LK++ ++    +    S    ++  K   A E L   D S  +L +   +   +
Sbjct: 481 YMEINNLKNISVSMNEANKFLESLDIEERFVKGVKASEILKIKDVSYDDLKTFL-NLNDY 539

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V  +++    Y  +  R+  + ++ K  E   IP++ +Y  +  +SN  +  L+ ++
Sbjct: 540 EDFVKNQIETMIKYEVFIERENKQIEKFKKLEHMYIPENINYDEIKGISNIARAGLNEVR 599

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIK 614
           P ++ +A++I G+T   + L++ ++K
Sbjct: 600 PLSVGEATRISGVTSNDVTLIIAHMK 625


>gi|224536936|ref|ZP_03677475.1| hypothetical protein BACCELL_01812 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521423|gb|EEF90528.1| hypothetical protein BACCELL_01812 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 624

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/620 (41%), Positives = 366/620 (59%), Gaps = 10/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPA+GG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  VDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENTPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    +   R   +VLT GTFL G++H+G+ K+  GRM +  S  
Sbjct: 121 DTVREILVENGEVVGLTTLLDVTFRAKCIVLTAGTFLNGLMHVGRTKLAGGRMAEPASYE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +   + GR+KTGTP R+DG+++ ++  E Q  +     FSF+   + + +Q+ C
Sbjct: 181 LTESIARHGIEYGRMKTGTPVRIDGRSVHYEYMETQDGECDFHKFSFLDTSVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HR++ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEVHRVLREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP  IQ + ++ +P  + + I RPGYAIEYDY +P +L  TLETKKI
Sbjct: 301 TTQELYLNGFSSSLPMNIQIEALKKVPAFKDLVIYRPGYAIEYDYFDPTQLKHTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG +   R +   +     N +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKSDRYELLKRKRDSINSIIEFTRN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS------SL 531
             +     N     +      +     + ++ P  +++N+        R+          
Sbjct: 481 YSMKPALINPVLEQLGTTPLRQGCKLIDLINRPQVTLENMAEHVSAFRRELDKVTERKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ + A ++   E   I   FDY+++ +LS E ++KL  + P  
Sbjct: 541 IIEAAEILIKYEGYIGRERMIADKLARLESIKIKGKFDYNAIQSLSTEARQKLVKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLI 611
           + QAS+I G++P+ +N+LL+
Sbjct: 601 IAQASRIPGVSPSDINVLLV 620


>gi|296198575|ref|XP_002746780.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Callithrix
           jacchus]
          Length = 700

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/641 (44%), Positives = 400/641 (62%), Gaps = 30/641 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EILS   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRCKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +++          V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVILAFIFE----RVILTTGTFLRGMIVIGLEMHPAGRLGD 211

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSFM + +   
Sbjct: 212 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSLPFSFMNETVWIK 271

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++     I   GPRYCPSIE K++RF  R  HQ+
Sbjct: 272 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETI--RGPRYCPSIESKVLRFPNR-QHQV 328

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 329 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 388

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + N+      SRT+ YIGV+ID
Sbjct: 389 SLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVNRKPPFVVSRTEGYIGVLID 448

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYN 472
           DLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G  + GC+ ++R +R         
Sbjct: 449 DLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKEAGCVSQQRYERACWMKSSLE 508

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKF 528
              S+LKS+  +S    +                A + L Y +  + +L    P+  +K+
Sbjct: 509 EGISVLKSIEFSSSKWKNLIPEASISTSRSLPVRALDVLKYEEVDVDSLAKAVPEPLKKY 568

Query: 529 S--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKL 584
           +    + ERL+IE++Y +    Q+ E KE++ +E   +PKD DY ++   +LS+E++EKL
Sbjct: 569 TKCRELAERLKIEATYESVLFHQLQEIKEVQRDEALQLPKDLDYLTVRDVSLSHEVREKL 628

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
              +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 629 HFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAAMNE 669


>gi|189485614|ref|YP_001956555.1| glucose-inhibited cell division protein GidA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|205831570|sp|B1H0R2|MNMG_UNCTG RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|170287573|dbj|BAG14094.1| glucose-inhibited cell division protein GidA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 597

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/621 (40%), Positives = 363/621 (58%), Gaps = 49/621 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R Y+V V+G GHAGCEA+   A++G  T +IT    ++  M CNPA+GG+ KG +VRE
Sbjct: 1   MERKYNVAVVGAGHAGCEASLACARMGLKTLIITLNADSMARMPCNPAVGGIAKGQMVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA+ G +GR+ D A +QF++LN  +GPAV  PR Q D+ELY + M + + +Q+NL+++Q
Sbjct: 61  IDAMGGEIGRITDRAVLQFKMLNSSRGPAVWSPRAQCDKELYSVLMSKSVQNQQNLEILQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      +   +  + +     I    VV+TTGTFL+G IH+GK+    GR  +  +  
Sbjct: 121 SEATSLTVKNGKVCGVKILTGETIEADAVVITTGTFLKGTIHLGKMHFNGGRFNEVSALY 180

Query: 182 LFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD----KITNR 236
           L  S ++      GR KT T  R++ ++I + K  +QF DE+ +PFS+ T     +   +
Sbjct: 181 LSKSLIEDCGLKLGRFKTTTTPRINSRSIDYSKMTEQFGDEKPVPFSYSTKVEEWRKNLK 240

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q+ C +T TN  TH+I+ +N+  S+IY G++ S  PRYCPSIE+KI R+ E+  H +F+E
Sbjct: 241 QLSCWLTYTNPITHKIVSDNLGLSSIYIGEVNSKSPRYCPSIEEKIERYPEKTSHHVFVE 300

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           PEG NT+ VY NG+ T LP  +Q Q I +I GLE   +IR GYAIEYDY +P ++  TLE
Sbjct: 301 PEGYNTNEVYLNGLYTGLPFNLQQQMINSIVGLENAKVIRYGYAIEYDYSSPLQIKKTLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
           TK +  LFL GQINGTTGYEEAAAQG VAG+N+  K          R +SYIG+++DD+T
Sbjct: 361 TKTVKNLFLGGQINGTTGYEEAAAQGFVAGVNAGLKVLGKTPFILERNESYIGILVDDIT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG+ EPYRMFTSRAEYR+S+R DNAD RL   G  +G I ++  K+F  Y + +  +  
Sbjct: 421 TKGMDEPYRMFTSRAEYRLSIRNDNADLRLMDAGHSIGLISDKAYKKFELYRKAFTDI-- 478

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS----LV 532
                                              + + +NL    PD    S       
Sbjct: 479 ----------------------------------CENNAENL----PDDEDLSPWSIEKA 500

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E + I   Y  Y   Q     ++K  + R IP+DFDY+ L +LS E K++L  ++P  +
Sbjct: 501 KEEVYIHKKYEGYIEIQNKMINKMKKSKDRKIPEDFDYNKLKSLSAETKQRLFEVRPQTI 560

Query: 593 LQASKIEGMTPAALNLLLIYI 613
            QAS+I  + P+ + +L +Y+
Sbjct: 561 GQASRICAIKPSDIAILTVYL 581


>gi|50302213|ref|XP_451040.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640171|emb|CAH02628.1| KLLA0A00935p [Kluyveromyces lactis]
          Length = 686

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/638 (44%), Positives = 409/638 (64%), Gaps = 24/638 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G GHAGCEAAA +A+ GA T LIT     IG+ SCNP++GG+GKG L+RE+DALD
Sbjct: 46  DVVVVGAGHAGCEAAAGSARSGAETMLITPFLDKIGTCSCNPSMGGVGKGTLLREVDALD 105

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+  +V D AGIQF++LN  +G AV GPR Q DRELY   MQ  + +  NL +  G+V  
Sbjct: 106 GVAAKVTDKAGIQFKMLNQSRGAAVWGPRAQIDRELYLKEMQNALQNYPNLTLFSGKVKD 165

Query: 127 FNTEKN---------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              +                  +  +V+ ++ +I+CS VV++TGTFL   IHIG   IPA
Sbjct: 166 VIIDHTLKVSFANDVNNRNFGDVRGVVLDNDEVIKCSKVVISTGTFLSAEIHIGLKTIPA 225

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+G++P+  + ++     F  GRLKTGTPARLDG+TI +   EKQ+ D+   P S+M +
Sbjct: 226 GRIGEAPTYGISHTLKAAGFKLGRLKTGTPARLDGRTIDFTNLEKQYGDDPPYPMSYMNN 285

Query: 232 KIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +++   QI C  TRT  E H  +  N+  S      +K  GPRYCPS+E KI+RF +++ 
Sbjct: 286 EVSIKDQILCYGTRTTSELHDYLKLNLHQSIHIRETVK--GPRYCPSLEAKIIRFSDKDS 343

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H+I+LEPEGLNTDV+YPNGIS ++PE++Q   +R IPGLE V I++P Y +EYDY++P+E
Sbjct: 344 HRIWLEPEGLNTDVIYPNGISNSMPEDVQEIMMRMIPGLENVKILQPAYGVEYDYVDPRE 403

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK I GL+LAGQINGTTGYEEA AQG+VAGIN+   +     +  SR+DSY GV
Sbjct: 404 LKQTLETKLIDGLYLAGQINGTTGYEEACAQGVVAGINAGLSARGRPPLILSRSDSYTGV 463

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL +KGV EPYRMFTSR+E+R+++R DNAD RLT  G KLG + E R +RF      
Sbjct: 464 LIDDLITKGVEEPYRMFTSRSEFRVTVRADNADFRLTEKGKKLGVVSEERWQRFLLDKTI 523

Query: 471 YNFLRSLLKSLVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA---- 525
           Y  L + LKS VL++        ++     K++ A++   +   ++ +L    PD     
Sbjct: 524 YRELENTLKSYVLSNHKWDQLLDVAVGSTHKSQNAWDMFKFNGVTLDSLIKAIPDLSIDS 583

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            +    ++ ++ +E+ YA Y  RQ    K  + +E  L+P ++DY+ +P++S+E K  L+
Sbjct: 584 SEIPVHILLKINVEAKYAPYLKRQNQFIKAFQADENMLLPLNYDYTKIPSISSECKTILN 643

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK-KNTVKLNE 622
            ++P  + QA +I+GMTPA++  L   ++ + +V  N+
Sbjct: 644 TVQPATIGQARRIQGMTPASIFELYKLVRSQQSVIKND 681


>gi|332850744|ref|ZP_08432991.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013150]
 gi|332730581|gb|EGJ61897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acinetobacter baumannii 6013150]
          Length = 549

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/538 (43%), Positives = 327/538 (60%), Gaps = 6/538 (1%)

Query: 85  VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM 144
            +KG AVR  R QADR  Y+ A++  + +Q NLD+ Q        E + +  +V Q    
Sbjct: 9   SRKGAAVRATRAQADRVRYKAAIRETLENQANLDIFQQAADDLIVEGDTVKGVVTQMGIR 68

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               TVVLTTGTFL GVIH+G  K   GR GD PS +L     +     GRLKTGTP R+
Sbjct: 69  FDAKTVVLTTGTFLGGVIHVGLEKSSGGRAGDPPSIALAQRLRELKLPVGRLKTGTPPRI 128

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIY 263
           D +++ +     Q  D      SFM D  +   Q+ C IT TN +TH II   +  S +Y
Sbjct: 129 DARSVDFSVMTPQPGDFPSPVMSFMGDVSMHPEQVNCYITHTNEKTHDIIRGGLDRSPMY 188

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
           +G I+  GPRYCPSIEDKI RF +++ HQ+FLEPEGL+T  +YPNGIST+LP ++Q + +
Sbjct: 189 TGVIEGVGPRYCPSIEDKIHRFSDKDSHQVFLEPEGLDTHELYPNGISTSLPFDVQFELV 248

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           R+I G+E  +I+RPGYAIEYDY NP+ L  TLETK I+GL+ AGQINGTTGYEEA AQGL
Sbjct: 249 RSIRGMENAHILRPGYAIEYDYFNPQALKFTLETKAINGLYFAGQINGTTGYEEAGAQGL 308

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AG+N+AR++ + +     R  +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD
Sbjct: 309 LAGLNAARRAWEQEEWTPKRDQAYMGVLVDDLITLGTKEPYRMFTSRAEYRLMLREDNAD 368

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST---SISFKQDGK 500
            RLT IG +LG + + R   + + ++      S L+ +     N        ++     K
Sbjct: 369 QRLTTIGRELGLVDDVRWAAYCEKMEAVERETSRLQHVWAAPNNPMGKKFVEMTGADLSK 428

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             +A + L  P+ +   +  +     + S  V E+++I   Y  Y  RQ  +  ++K  E
Sbjct: 429 ECSAIDLLKRPNINFGQIAELTG--SEVSQQVGEQIEIAVKYEGYINRQHEDVAQLKRLE 486

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  IP DFDY  +  LS E+ +KL  ++P  L QAS+I G+TPAA+ L++I I+KN +
Sbjct: 487 ETKIPADFDYDVVSGLSREITQKLKTVRPETLAQASRIPGVTPAAVQLVMITIRKNNM 544


>gi|253564501|ref|ZP_04841958.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_2_5]
 gi|251948277|gb|EES88559.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacteroides sp. 3_2_5]
 gi|301161173|emb|CBW20711.1| putative glucose inhibited division protein A [Bacteroides fragilis
           638R]
          Length = 625

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/621 (41%), Positives = 368/621 (59%), Gaps = 11/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  
Sbjct: 121 DTVKEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKNQLPGGRMAEPASYK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C
Sbjct: 181 LTESIAKHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI
Sbjct: 301 TTQELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R        +    + +  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRN 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS-------S 530
             + +  ++    ++      +     + ++ P  +I+N+    P   R+          
Sbjct: 481 YSIKAALINDALENLGTTPLRQGCKLIDLINRPQITIENISEYVPAFKRELDKITDERKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++KL  + P 
Sbjct: 541 EILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQKLKKIDPE 600

Query: 591 NLLQASKIEGMTPAALNLLLI 611
            + QAS+I G++P+ +N+LL+
Sbjct: 601 TIAQASRIPGVSPSDINVLLV 621


>gi|255004518|ref|ZP_05279319.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Virginia]
          Length = 627

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/591 (46%), Positives = 372/591 (62%), Gaps = 7/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 28  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 88  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 147

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 148 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 208 DRSSIDWSATAEQKGDPVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 267

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG +T+ P ++Q + +R
Sbjct: 268 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNG-ATSCPIDVQLEMLR 326

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 327 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 386

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 387 AGANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNAD 446

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 447 MRLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKT 506

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 507 AFELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 566

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 567 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 617


>gi|261749197|ref|YP_003256882.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497289|gb|ACX83739.1| glucose-inhibited division protein A [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 624

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/622 (44%), Positives = 380/622 (61%), Gaps = 7/622 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +  YDVIV+GGGHAG EAA+ +AK+G+ T LIT    TIG MSCNPAIGG+ KG ++R
Sbjct: 3   LFSDIYDVIVVGGGHAGAEAASASAKMGSKTLLITTNLQTIGQMSCNPAIGGIAKGQIIR 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR+L+    +  +   + LD+ 
Sbjct: 63  EIDALGGNSGIITDYSMIQFRMLNKSKGPAMWSPRAQCDRKLFSNNWRYFLEKNQKLDLY 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     +K  +  ++    + I+  +V+LT GTFL G IHIGK  +  GR+ +    
Sbjct: 123 QDTVTSLIVKKEKVKGVITSFGTKIKGKSVILTNGTFLNGKIHIGKKIVSGGRIAEQEVK 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            +        F  GR+KTGT  R+DG+++ + K   Q  D     FSF       +Q +C
Sbjct: 183 GITEQLKSLGFRYGRMKTGTSPRVDGRSLNYHKMGSQEGDLNPKKFSFSNTIKLRKQRKC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN + H +I +N+K S I++G I+   PRYCPSIE+KI RF ++  H IF+EPEG 
Sbjct: 243 HITCTNKKVHDLIRKNLKFSPIFTGSIQGVSPRYCPSIEEKIYRFTDKEEHHIFVEPEGW 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  VY NG ST+LPE+IQ Q +R I G EK  ++RPGYAIEYDY  P +L  TLE++ I
Sbjct: 303 NTVEVYINGFSTSLPEKIQSQALRNISGFEKAKMLRPGYAIEYDYFPPIQLKLTLESRLI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           S LF AGQINGTTGYEEAAAQGL+AGIN+  K ++ +     R+ +YIGV+IDDL +KG 
Sbjct: 363 SNLFFAGQINGTTGYEEAAAQGLIAGINAHLKIHQKEPFILKRSQAYIGVLIDDLITKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT +G K+G I + + K   K   +     S  + 
Sbjct: 423 EEPYRMFTSRAEYRMLLRQDNADERLTYMGYKIGLISDGKMKAVDKKKSKVEKCLSFFQK 482

Query: 481 LVLTSKNLSSTSISFKQ--DGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLVI 533
             L  K ++   I  K       +     LS  +  I ++ SI       +   FS  ++
Sbjct: 483 ENLKPKIINPILIEKKSPIISHEKKIDIILSRSEIDIHDIISIPFLKNKIEKNNFSQEIL 542

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
           E++ I   Y  Y  R+   AK++   E   IP++FDY  +P+LS E +EKL+  +P +L 
Sbjct: 543 EQVSIRIKYRGYLDREKENAKKLLKLENLKIPENFDYEKIPSLSLEAREKLAYHRPNSLA 602

Query: 594 QASKIEGMTPAALNLLLIYIKK 615
           QAS+I G++P+ L++LL+Y+ +
Sbjct: 603 QASRISGVSPSDLSILLVYMGR 624


>gi|53711391|ref|YP_097383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis YCH46]
 gi|265764837|ref|ZP_06093112.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_16]
 gi|81170517|sp|Q650H5|MNMG_BACFR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|52214256|dbj|BAD46849.1| glucose-inhibited division protein A [Bacteroides fragilis YCH46]
 gi|263254221|gb|EEZ25655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides sp. 2_1_16]
          Length = 625

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/621 (41%), Positives = 368/621 (59%), Gaps = 11/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  
Sbjct: 121 DTVKEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKTQLPGGRMAEPASYK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  K   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C
Sbjct: 181 LTESIAKHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI
Sbjct: 301 TTQELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R        +    + +  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRN 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS-------S 530
             + +  ++    ++      +     + ++ P  +I+N+    P   R+          
Sbjct: 481 YSIKAALINDALENLGTTPLRQGCKLIDLINRPQITIENISEYVPAFKRELDKITDERKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++KL  + P 
Sbjct: 541 EILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQKLKKIDPE 600

Query: 591 NLLQASKIEGMTPAALNLLLI 611
            + QAS+I G++P+ +N+LL+
Sbjct: 601 TIAQASRIPGVSPSDINVLLV 621


>gi|295668953|ref|XP_002795025.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226285718|gb|EEH41284.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 695

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/632 (44%), Positives = 386/632 (61%), Gaps = 21/632 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+
Sbjct: 96  ALDGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      +          I  + ++   +I    VV+TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIILSREDLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-- 233
           ++ +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++  
Sbjct: 216 EAATFGLSRSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAV 275

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNETSHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHI 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           ++LEPEG   + V YPNGIS  +P + Q   +RTIPGLE   +++ GY +EYDY++P+ L
Sbjct: 334 VWLEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAQMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 394 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFTLSRSDGFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   + 
Sbjct: 454 VDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQI 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----- 526
             LR+LL++    S   S        D   R+A++ L   D SI ++             
Sbjct: 514 TELRTLLENTKFPSTLWSRKGFGVHGDNNLRSAFDLLRLNDISIDDIIPHIESGSGRTYT 573

Query: 527 --KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
              F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L
Sbjct: 574 PLSFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDEALLLPPDIDYGQVVGLSYEERAAL 633

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             ++P N+  A +IEGMTP A   LL++++KN
Sbjct: 634 ERVRPENIGMARRIEGMTPVAALRLLVHVRKN 665


>gi|197294686|ref|YP_001799227.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Phytoplasma australiense]
 gi|171854013|emb|CAM11978.1| Glucose inhibited division protein A [Candidatus Phytoplasma
           australiense]
          Length = 614

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/615 (41%), Positives = 363/615 (59%), Gaps = 5/615 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD IV+G GHAG EAA + AK    T LI+     I S+ CNP+IGG  KG +VREIDA
Sbjct: 2   EYDSIVVGAGHAGVEAALILAKK-HQTLLISGSLKKIASLHCNPSIGGPAKGVVVREIDA 60

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+MG+ AD A IQ ++LN  KGPAVR  R Q D+  Y   + + + +  NLD+++G V
Sbjct: 61  LGGVMGKAADLAQIQMKMLNFSKGPAVRALRAQIDKIQYPKIILKMLQTAPNLDLLEGLV 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N I  + + D   I   TV++TTGT+L   I IG+ K  +G  G   +  +  
Sbjct: 121 NHLLIKNNQIQGVCLLDGRKIYAKTVIITTGTYLSSQILIGETKTASGPNGTPTTYGISQ 180

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGIT 243
                 F+  RLKTGTP R+   TI + +T+ Q  D  L  FSF +D K    Q  C +T
Sbjct: 181 QLKDLGFEIIRLKTGTPPRIKKATIDYAQTKIQLGDTDLQTFSFDSDIKKLGSQEACFLT 240

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH++I +++  SA+Y G IK  GPRYCPSIEDK+VRF ++  HQIF+EPE ++ D
Sbjct: 241 HTNEKTHQVIQKHLNKSAMYGGYIKGTGPRYCPSIEDKVVRFFDKKSHQIFIEPESVSLD 300

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G+ST++P+ IQH+ ++TIPGL+   I + GYAIEYD  NP +L   LETKKI+ L
Sbjct: 301 EMYLQGLSTSMPQNIQHEILKTIPGLQNAEIAKYGYAIEYDAFNPSQLKHNLETKKINNL 360

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAA QGL+AGIN++ K          R ++YIGV+IDDL +KG  EP
Sbjct: 361 FFAGQMNGTSGYEEAACQGLMAGINASLKLQNKSPFVLKRNEAYIGVLIDDLITKGTKEP 420

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+ TSRAE+R+ LR DNAD RL       G I  +  + F K  +    +  + ++  +
Sbjct: 421 YRLLTSRAEFRLLLRHDNADLRLKEYSNHFGLIDAKNYEAFKKKKESLQLILKMSQNHEI 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            S+   +            T ++ L  P+F+ Q L        K      E+ +I+  Y 
Sbjct: 481 LSEE-KNLDYLKTTLTGKTTLFQLLKRPEFNYQTLQHFL--KIKADQKTYEQAEIQIKYE 537

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +   EA+++   E++ IP+  +YS +  LS E +EKL+++KP  L QAS+I G+  
Sbjct: 538 GYIAKAKKEAEKLLKLEQKKIPEKINYSEIKNLSKEAQEKLTLIKPETLGQASRILGVNQ 597

Query: 604 AALNLLLIYIKKNTV 618
             +++LLIY+ K   
Sbjct: 598 VDISILLIYLGKERA 612


>gi|225678539|gb|EEH16823.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 695

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/632 (44%), Positives = 388/632 (61%), Gaps = 21/632 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+
Sbjct: 96  ALDGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      +          I  + ++   +I    VV+TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIILSREDLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-- 233
           ++ +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAV 275

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEASHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHI 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           ++LEPEG   + V YPNGIS  +P + Q   +RTIPGLE  ++++ GY +EYDY++P+ L
Sbjct: 334 VWLEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 394 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFILSRSDGFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   + 
Sbjct: 454 VDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQI 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----- 526
             LR+LL++    S   S        D   R+A++ L   D SI ++      +      
Sbjct: 514 TELRTLLENTKFPSALWSRKGFGVHGDNNLRSAFDLLRLNDTSIDDIIPHIESSSGRTYT 573

Query: 527 --KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
              F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L
Sbjct: 574 PLSFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDESLLLPPDMDYGQVVGLSYEERAAL 633

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             ++P N+  A +IEGMTP A   LL+++++N
Sbjct: 634 ERVRPENIGMARRIEGMTPVAALRLLVHVRRN 665


>gi|310817162|ref|YP_003965126.1| glucose-inhibited division protein A [Ketogulonicigenium vulgare
           Y25]
 gi|308755897|gb|ADO43826.1| glucose-inhibited division protein A [Ketogulonicigenium vulgare
           Y25]
          Length = 623

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/590 (50%), Positives = 401/590 (67%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + GA TAL+T   + IG MSCNPAIGGLGKGHLVRE+DA+DG+MGRVAD AGIQFR+LN+
Sbjct: 26  RKGARTALVTLSQAGIGVMSCNPAIGGLGKGHLVREVDAMDGVMGRVADYAGIQFRMLNL 85

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           KKGPAV+GPR QADR  YR  MQREI++  NL V+QGEV     +  +++ + + D + I
Sbjct: 86  KKGPAVQGPRAQADRARYRTQMQREIMATPNLTVVQGEVVDLVVKDGVVTGVELADGAQI 145

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
               VVLTTGTFLRGVIHIG      GRMG+ PS  L           GRLKTGTP RLD
Sbjct: 146 ATRAVVLTTGTFLRGVIHIGDKSHAGGRMGEQPSVRLAERMRALALPLGRLKTGTPPRLD 205

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           G+TI W   E Q  D+  + FSF+      RQI CGIT TN  TH II EN+  SA+Y G
Sbjct: 206 GRTIDWSVLESQPGDDVPVMFSFLNKVPPARQISCGITHTNARTHDIIRENLSRSAMYGG 265

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDKIVRF ++  HQIFLEPEGL+   VYPNGIST+LP+++Q  ++ +
Sbjct: 266 HIEGIGPRYCPSIEDKIVRFADKESHQIFLEPEGLDDHTVYPNGISTSLPQDVQADYVHS 325

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I GLE   I +PGYAIEYDY++P+ L  +LE K + GL+LAGQINGTTGYEEAAAQGL A
Sbjct: 326 IKGLENAVITQPGYAIEYDYVDPRALSASLEVKALPGLYLAGQINGTTGYEEAAAQGLAA 385

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           G+N+A K+   + + FSR +SYIGVMIDDL ++GV EPYRMFTSRAE+R+SLR DNAD R
Sbjct: 386 GLNAAAKALSQEAMIFSRANSYIGVMIDDLITRGVTEPYRMFTSRAEFRLSLRADNADQR 445

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAY 505
           LT  G + G + + R + +A      N +R+ L+ +  T++ L++  ++   D ++R   
Sbjct: 446 LTEWGRENGAVKDARWQAYAAKRDGLNDVRARLEGVKFTARALAAAGVNINADKESRDGL 505

Query: 506 EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             L+  D S   + S+ P+       +  +++ ++ Y++Y  RQ  +   ++ +E   IP
Sbjct: 506 GVLALSDTSFDTIISLAPEMSDVPGDIQAQIKRDALYSSYMDRQNRDIAALQRDENLTIP 565

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            +  +++LP LS+EL  KL  ++P N+ Q +KIEGMTP+A+ L+ I +++
Sbjct: 566 AEMSFTALPGLSSELALKLGRIRPGNMAQVAKIEGMTPSAMLLISIAVRR 615


>gi|293363789|ref|ZP_06610530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma alligatoris A21JP2]
 gi|292552655|gb|EFF41424.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma alligatoris A21JP2]
          Length = 612

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/619 (40%), Positives = 351/619 (56%), Gaps = 14/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +++ I++GGGHAG EAA   A  G  +AL +     +G M CNP+IGG  KG + REIDA
Sbjct: 6   NFEAIIVGGGHAGIEAAFALAHKGHKSALFSFDLKNLGMMPCNPSIGGPAKGIITREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G  AD A IQ ++LN  KGPAVR  R Q D+E Y   + ++    ENL +++  V
Sbjct: 66  LGGMQGYFADLAMIQIKMLNESKGPAVRAIRAQIDKEKYSQIILKKAKETENLTLVEKSV 125

Query: 125 AGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               T+  N +  I  +D        VV+TTGT++   I  G     +G  G   +N L 
Sbjct: 126 VEILTDQNNQVIGIKTEDGEEYFAKVVVITTGTYMSSRIIRGSEITYSGPDGQKTTNLLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S  K  FD  RLKTGTP R+   +I + K EK+  D+  + FS  +      QI C +T
Sbjct: 186 ESLKKIGFDLQRLKTGTPPRVFADSIDFSKVEKEKLDDSALCFSSRSGVKLPNQISCYLT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH+II +NI  S +YSG I+  GPRYCPSIEDKI+RF ++  HQIF EPE  +  
Sbjct: 246 YTNEKTHKIIEKNISLSGMYSGLIEGVGPRYCPSIEDKIMRFRDKTRHQIFFEPETNDGK 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++Y NG S+++P E+Q + I+TIPGLE   + +  YAIEYD +NP +L PTLETKK+  L
Sbjct: 306 IIYVNGFSSSMPIEVQKEMIKTIPGLENAKVQKWAYAIEYDALNPLDLLPTLETKKVKNL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AGIN+A      + I   R ++YIGV+IDDL +KG  EP
Sbjct: 366 FSAGQINGTSGYEEAAAQGLIAGINAALYLENKEQIILKRHEAYIGVLIDDLVTKGTKEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR DN+D RL+  G  +G I +           +       L +  +
Sbjct: 426 YRMLTSRAEYRLLLRNDNSDLRLSKYGYDIGLIKKSDYDFIVDKYNKIEQKIEELNNTFI 485

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           +SK+  +            +  + +S P+    +                    +     
Sbjct: 486 SSKDPLAIKYGI---TNGVSLIKVISRPEVDASDFLGDFEFKNDL--------VVAVRLD 534

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  +Q ++A ++   E   IPKD D++ +P ++ E K+KL  + P  + QAS+I G+ P
Sbjct: 535 GYIKKQKMDAAKMLRLENLKIPKDVDFNLIPNIATEAKQKLIKINPLTIGQASRISGINP 594

Query: 604 AALNLLLIYIKKNTVKLNE 622
           A + ++L Y+  NT K +E
Sbjct: 595 ADIQMILFYL--NTRKKSE 611


>gi|60679709|ref|YP_209853.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides fragilis NCTC 9343]
 gi|81170516|sp|Q5LIY5|MNMG_BACFN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|60491143|emb|CAH05891.1| putative glucose inhibited division protein A [Bacteroides fragilis
           NCTC 9343]
          Length = 625

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/621 (41%), Positives = 368/621 (59%), Gaps = 11/621 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG GHAGCEAAA AA LG+ T LIT   + +  MSCNPA+GG+ KG +VRE
Sbjct: 1   MDFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKVAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  IDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   +  +    +       +VLT GTFL G++H+GK ++P GRM +  S  
Sbjct: 121 DTVKEIIVENGEVVGLKTFWDVTFHARCIVLTAGTFLNGLMHVGKTQLPGGRMAEPASYK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +   + GR+KTGTP R+DG+++ ++  + Q  +     FSFM   + + +Q++C
Sbjct: 181 LTESIAEHGIEYGRMKTGTPVRIDGRSVHYELMDTQDGECDFHKFSFMNTSVRHLKQLQC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H ++   +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEAHNVLRNGLADSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP EIQ + ++ IP  + + I RPGYAIEYDY +P +L  TLE+KKI
Sbjct: 301 TTQELYLNGFSSSLPMEIQIEALKKIPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEA  QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAGGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R        +    + +  ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTERAYKLGLVKEDRYALLKSKREAVENIVNFTRN 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS-------S 530
             + +  ++    ++      +     + ++ P  +I+N+    P   R+          
Sbjct: 481 YSIKAALINDALENLGTTPLRQGCKLIDLINRPQITIENISEYVPAFKRELDKITDERKE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y GR+ I A ++   E   I   FDY SL +LS E ++KL  + P 
Sbjct: 541 EILEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFDYDSLQSLSTEARQKLKKIDPE 600

Query: 591 NLLQASKIEGMTPAALNLLLI 611
            + QAS+I G++P+ +N+LL+
Sbjct: 601 TIAQASRIPGVSPSDINVLLV 621


>gi|313887477|ref|ZP_07821166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923119|gb|EFR33939.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 638

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/625 (40%), Positives = 361/625 (57%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +D+IVIG GHAGCEAA   A++GAST LIT   + +  +SCNPA+GG+ KG +VRE
Sbjct: 14  MKTHFDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNPAMGGIAKGQIVRE 73

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G  G+++DAA IQ+R+LN  KGPA+  PR Q DR  +    + ++   + L + Q
Sbjct: 74  IDALGGYTGQMSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWRGQLDRTDRLALWQ 133

Query: 122 GEVAGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V             +V Q       + V+LT GTFL G++H GK  IP GR+ +  S+
Sbjct: 134 DFVVDIKFGAEDSKHLVVTQLGMTFTAAKVILTAGTFLGGLMHFGKTMIPGGRISEPASH 193

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIE 239
            +    +       R+KTGTPA +DG+++ W   E+Q  DE    FSF+   +   RQ  
Sbjct: 194 GITECLVAAGHHADRMKTGTPACIDGRSVDWSLVEEQPGDEEAGRFSFLPMQRSQLRQRS 253

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C I  TN   H I+  ++  S +Y+G I+S GPRYCPSIE KIV F +R  HQ+FLEPEG
Sbjct: 254 CYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFADRTRHQLFLEPEG 313

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             T+  Y NG S++LP + Q + ++TIP L  V + RPGYAIEYD+ +P++L  TLE+K 
Sbjct: 314 EETNEYYLNGFSSSLPIDTQIRALQTIPALRDVQLYRPGYAIEYDFFDPRDLHHTLESKL 373

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+LAGQ+NGTTGYEEAA QGL+AGIN+A    K   +   R ++YIGV+IDDL +KG
Sbjct: 374 VPGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLVLRRDEAYIGVLIDDLVTKG 433

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAEYRI LR DNAD RLTP   +LG     R  R  +  +    L +L  
Sbjct: 434 VDEPYRMFTSRAEYRILLRQDNADLRLTPYAEQLGLATAERLSRLEQIKEGIAALDNLCA 493

Query: 480 SLVLTSKNLS--STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-------KFSS 530
           +  +  + ++    S+  K           L  P  S+  L +                 
Sbjct: 494 NYSVKPEEVNGYLVSLGEKPLDFGTKLTTLLLRPHVSLSGLIAQLDGFATQVAGLIGDDE 553

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++ R +    Y  Y  R+   A+++   E   +    DY  + AL  E +EKLS ++P 
Sbjct: 554 EILTRTETAIKYRGYIEREEQAAQKLHRLESLTLGDKLDYQQISALPIEAREKLSRIRPA 613

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QA++I G++P+ +N+LL+ + +
Sbjct: 614 TIAQAARIPGISPSDINILLVLLGR 638


>gi|255003397|ref|ZP_05278361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Anaplasma marginale str. Puerto Rico]
          Length = 630

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/591 (46%), Positives = 372/591 (62%), Gaps = 7/591 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T LITHK  +IG MSCNPAIGG+ KG +VRE+DALDGLMG+  D A I   +LN  KGP
Sbjct: 31  KTLLITHKIGSIGEMSCNPAIGGVAKGVVVREVDALDGLMGQAIDKASIHSTILNQSKGP 90

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDNSMI 145
           AV GPR QADR+ YR AMQ  +L  +NL+V++  V  F+T+       ++S+ +    ++
Sbjct: 91  AVWGPRAQADRDAYRTAMQDIVLGYKNLEVLEASVIDFSTDNEAGSPCVASVTLSCGKVL 150

Query: 146 RCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
               +VL TGTFL G+IH+G+ K IPAGRMGD PS  L  +     F  GRLKTGTP R+
Sbjct: 151 HTRRLVLATGTFLGGMIHVGRDKGIPAGRMGDKPSTRLAKALCAHGFMLGRLKTGTPPRI 210

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
           D  +I W  T +Q  D    PFSF++D I   Q+ C IT TN +TH I+  N+  +A  +
Sbjct: 211 DRSSIDWSATAEQKGDPVPTPFSFLSDAIVLPQVSCYITHTNTKTHEIVRNNLHLAASCA 270

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             +    PRYCPSIE+K+ RF E   HQ+FLEPEGL+++ VYPNG +T+ P ++Q + +R
Sbjct: 271 SLVDVAAPRYCPSIEEKVRRFPEHKSHQVFLEPEGLDSNSVYPNG-ATSCPIDVQLEMLR 329

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           +I GLE V ++R GY +EY++++P+EL  TLETKKI GL+ AGQINGTTGYEEAA QG+V
Sbjct: 330 SIRGLENVRMLRHGYTVEYNFVDPRELHHTLETKKIKGLYFAGQINGTTGYEEAAGQGIV 389

Query: 385 AGINSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           AG N+A   S         R+++YIGVMIDDL + G  EPYR+FTSRAEYR+ LR DNAD
Sbjct: 390 AGANAALSLSQNHAPFVLKRSEAYIGVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNAD 449

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT +G   G + ERR        QE + L   L    +T   LS   I   Q+G+ +T
Sbjct: 450 MRLTEMGYNAGLVSERRFGVLYNKKQEMDRLVEELHRTSITPHTLSKCGIFISQNGEKKT 509

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L +P  ++  L  + P    FS   +  + IE  YA Y  RQ  + +    EE   
Sbjct: 510 AFELLGHPSITMDILIQLWPSLNSFSRAALAAVGIEGKYAPYLQRQAADIQSFLEEENAS 569

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           IP D  YS +  LS E +EKL   +PF++  A +I G+TPAA+  ++I+++
Sbjct: 570 IPADIRYSEVHGLSKEAQEKLQRAQPFSIGAARRIPGITPAAIANIIIHLR 620


>gi|268529770|ref|XP_002630011.1| Hypothetical protein CBG13376 [Caenorhabditis briggsae]
 gi|187028709|emb|CAP32236.1| hypothetical protein CBG_13376 [Caenorhabditis briggsae AF16]
          Length = 636

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/613 (45%), Positives = 395/613 (64%), Gaps = 11/613 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCE+AA +A+ G+ T L+T    TIG MSCNP+ GG+GKGHL+RE+DALD
Sbjct: 18  DVIVIGGGHAGCESAAASARCGSRTILVTQNKKTIGEMSCNPSFGGIGKGHLIREVDALD 77

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL GR+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S E L+V++GEVA 
Sbjct: 78  GLCGRICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKKHMQNEIFSTEKLEVLEGEVAE 137

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + + +  + M + ++I    VV+TTGTFLR  I+ G    PAGR+G+  S+ L  SF
Sbjct: 138 LLVKNDRVVGVKMANETVISTKCVVITTGTFLRAQIYQGMSVWPAGRIGEKSSDKLSESF 197

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ---IECGIT 243
           +K  F+ GRL+TGTP RL   +I + K EK   D++ IPFSF+TD I  +    +   + 
Sbjct: 198 LKLGFELGRLRTGTPPRLMKDSIDFSKFEKVEPDKKPIPFSFLTDDIWIKYQDQLPTYLG 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN ET RI  EN+  +   + +  S  PRYCPS E K++RF     H++FLE EGL++ 
Sbjct: 258 HTNEETCRIGQENMHENWQVASETTS--PRYCPSFESKLLRFPNL-KHRLFLEHEGLDSP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YP G+S     E+Q Q  R IPGLE V I +PGY ++YD++NPK+L  +LET+++ G+
Sbjct: 315 HIYPQGMSMTFKPEVQLQIFRAIPGLENVEIFQPGYGVQYDFVNPKQLKKSLETQRVEGM 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG++AGIN++ ++ K   +  SRT++YIGV+IDDLTS G  EP
Sbjct: 375 FLAGQINGTTGYEEAAAQGVIAGINASARARKEPAMEISRTEAYIGVLIDDLTSLGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAE+R+ LRPDNAD RLT IG + G IG+ R  +F++  +  + L    + L +
Sbjct: 435 YRMLTSRAEFRLHLRPDNADIRLTEIGRRHGAIGDTRWNKFSRTRKSLDDLTQKTEDLKM 494

Query: 484 TSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           +          ++ + DGK  +A+E +   D   ++L  +  D       ++ERL+IE  
Sbjct: 495 SMVKWKRKIPKLTARNDGKVLSAFELVHRYDLGKEDLEMLFED---VDEEILERLKIEGR 551

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y     R   + +EI  E   +IP + D+S++  +S E  EKL   +P NL  A++I G+
Sbjct: 552 YRMEHERMKAKKQEIDRESATVIPDNIDFSTMRGMSLECIEKLERARPRNLAAATRISGI 611

Query: 602 TPAALNLLLIYIK 614
           TP A+ +L+ Y+K
Sbjct: 612 TPEAIVVLMRYLK 624


>gi|237741001|ref|ZP_04571482.1| glucose inhibited division protein A [Fusobacterium sp. 4_1_13]
 gi|229431045|gb|EEO41257.1| glucose inhibited division protein A [Fusobacterium sp. 4_1_13]
          Length = 627

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/626 (38%), Positives = 359/626 (57%), Gaps = 16/626 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+G GHAG EAA  +A+LG   ALIT    TI  MSCNP+IGG GK +LV E
Sbjct: 1   MDKDYDVIVVGAGHAGVEAAFASARLGNKVALITLYLDTISMMSCNPSIGGPGKSNLVTE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID L G MGR  D   +Q + LN  KGPA R  R QAD+  YR  M+ ++   EN+ +IQ
Sbjct: 61  IDVLGGEMGRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLEKTENISLIQ 120

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                   E             ++ I  +   +     +VL TGTFL+G I IG +   A
Sbjct: 121 DCAEEILVEDIKDSQNSSYVKKVTGIKTRLGIIYNAKAIVLATGTFLKGKIVIGDVTYSA 180

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR G++ +  L +S  +      R +T TP RLD KTI + + E+   +E    FS  T 
Sbjct: 181 GRQGETSAEKLSDSLRELGIKIERYQTATPPRLDKKTIDFSQLEELRGEEHPRYFSLFTK 240

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K  N  +   +T T+ ET  ++ E +K S I SG + ++GPR+CPSI+ K++ F ++  H
Sbjct: 241 KEKNNTVPTWLTYTSKETIEVVREMMKFSPIVSGMVNTHGPRHCPSIDRKVLNFPDKAKH 300

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLE E  N+D +Y NG++TA+P  +Q + ++TI GLE   I+R GYA+EYDY    +L
Sbjct: 301 QIFLEMESENSDEIYVNGLTTAMPAFVQEKILKTIKGLENAKIMRHGYAVEYDYAPASQL 360

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
           +P+LE K+ISGLF AGQINGT+GYEEAAAQG +AG+N+A+K      +   R+++YIGV+
Sbjct: 361 YPSLENKRISGLFFAGQINGTSGYEEAAAQGFIAGVNAAKKIKGEKPVIIDRSEAYIGVL 420

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL  K   EPYR+  SRAEYR++LR DNA  RL     ++G +   + K   K I + 
Sbjct: 421 IDDLIHKKTPEPYRVLPSRAEYRLTLRYDNAFMRLFDKIKEVGIVDRDKIKFLEKSISDV 480

Query: 472 NFLRSLLKSLVLT----SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
               + LK++ ++    +K L +  I  ++  K   A E L   D S  NL  +  +   
Sbjct: 481 YTEINNLKNISVSMNAANKFLENLGIE-ERFVKGVKASEILKIKDVSYDNL-KVFLNLDD 538

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +   V  +++    Y  +  R+  + ++ K  E   I ++ +Y  +  +SN  K  L+ +
Sbjct: 539 YEDFVKNQIETMIKYEIFIERENKQIEKFKKLEHMYILENINYDEIKGISNIAKAGLNEV 598

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYI 613
           +P ++ +A++I G+T   + L++ ++
Sbjct: 599 RPLSIGEATRISGVTSNDITLIIAHM 624


>gi|160331657|ref|XP_001712535.1| gidA [Hemiselmis andersenii]
 gi|159765984|gb|ABW98210.1| gidA [Hemiselmis andersenii]
          Length = 653

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 363/621 (58%), Gaps = 7/621 (1%)

Query: 1   MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N+ Y DV+VIGGGHAG E+A  +AK GA T LIT     IG   CNP+IGG  K  LV
Sbjct: 34  MSNKPYYDVVVIGGGHAGIESALASAKRGAFTLLITLNLDKIGWQPCNPSIGGPAKSTLV 93

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDAL G MG++AD   +  R+LN  KGPAV   R Q D++ Y    ++ + +  NL +
Sbjct: 94  HEIDALGGGMGKIADRTFLHKRILNKSKGPAVWALRVQTDKKEYSEENKKMLDNYPNLTI 153

Query: 120 IQGEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
            +G V+     K   +  I      +IRC T ++TTGTFL G I IG  KI AGR G+  
Sbjct: 154 QEGMVSDILISKSFKLKGIKTYFGGIIRCKTAIVTTGTFLGGTIWIGSKKISAGRAGEMA 213

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQ 237
           S  L  +    +F T RLKTGTP R+D + I  +K EKQ +DE    FSF   +  + + 
Sbjct: 214 SIGLTQTLRNLEFKTSRLKTGTPPRIDSRHINLEKIEKQKSDETENWFSFDRMEWNSRKT 273

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           ++C +T T   T  +I +N+  S  Y G +KS GPRYCPSIEDKIVRF ++  HQIFLEP
Sbjct: 274 MDCFLTHTTSRTFALIRKNLHLSPKYGGFMKSTGPRYCPSIEDKIVRFFDKKEHQIFLEP 333

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EG   + +Y  GIST LPE +Q + I+TIPGLE   ++RP Y+++YDYI   +L   L +
Sbjct: 334 EGRILNEIYVQGISTGLPENLQIEIIKTIPGLENSKMVRPAYSVDYDYIFASQLDKNLMS 393

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K + GLF AGQI GTTGYEEA AQG++AG+N++    K + IC SR  S+IG +IDDL +
Sbjct: 394 K-VEGLFFAGQICGTTGYEEAGAQGILAGLNASLFCEKKNMICLSREGSFIGNLIDDLCT 452

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           K + EPYR+ TSR+E+R+ LR DNAD RLTP+G K G + +R+ K+F   IQ        
Sbjct: 453 KQLKEPYRVLTSRSEFRLLLRSDNADFRLTPLGRKYGLVNDRKWKKFKNKIQRIENESRR 512

Query: 478 LKSLVLT--SKNLSSTSISF-KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L    +   SK L            K  +  + +  P+F    L ++       +   I+
Sbjct: 513 LNKTFIKVNSKILKILESEIGNIVKKESSLAKLIGRPNFDFFQLNNLDLQNTSLNYEEIQ 572

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           RL+IE  Y  Y  RQ ++ K +       I K+ ++  +  LS E +EKL+  +P +L +
Sbjct: 573 RLEIEIKYLNYIERQELQIKNVDRIMNTQIKKNINFMKITQLSKEGREKLTKRRPVDLRE 632

Query: 595 ASKIEGMTPAALNLLLIYIKK 615
           A KI G++ + +  L ++ ++
Sbjct: 633 ALKIGGISASDIQTLFLFTRQ 653


>gi|257452321|ref|ZP_05617620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. 3_1_5R]
 gi|317058864|ref|ZP_07923349.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 3_1_5R]
 gi|313684540|gb|EFS21375.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. 3_1_5R]
          Length = 630

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/600 (42%), Positives = 354/600 (59%), Gaps = 17/600 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TA+ T     IG MSCNP++GG  K HLVREIDAL G MGR  D   IQ RVLN KKGP
Sbjct: 29  KTAIFTISLDNIGVMSCNPSLGGPAKSHLVREIDALGGEMGRNIDKTYIQIRVLNTKKGP 88

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVR  R QAD+  Y   M+R I + ENL  IQG V+    E      I +++    R   
Sbjct: 89  AVRSLRAQADKIRYAKEMKRTIETCENLSAIQGMVSELLVEDGKAVGIKIREGVEYRAKR 148

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           ++L TGTFLRG+IHIG+     GRMG+  S  L  S +K   D  R KTGTP+R+D +TI
Sbjct: 149 IILATGTFLRGLIHIGESHFSGGRMGELSSEDLPLSLLKHGLDLQRFKTGTPSRIDARTI 208

Query: 210 IWDKTEKQFAD-ERLIPFSFMT---DKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +   E+Q  +  +++ FS  T   +    RQI C I  TN E H  I  N + S +++G
Sbjct: 209 DFSVLEEQPGETAKILKFSNRTSDKELKDRRQISCYIAHTNEEVHTEIKNNRERSPLFNG 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+ R+ ++  H +FLE EG +T+ +Y  G+S++LP ++Q   I  
Sbjct: 269 TIQGLGPRYCPSIEDKVYRYADKPQHHLFLEREGYDTNEIYLGGLSSSLPVDVQENMIHK 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G E   I+R GYAIEYDYI P E+  +LE++ I  LFLAGQINGT+GYEEA AQGL+A
Sbjct: 329 IHGFEHAQIMRYGYAIEYDYIPPSEIQYSLESRTIPNLFLAGQINGTSGYEEAGAQGLMA 388

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+ R  +  D I   R DSYIG +IDDL  KG  EPYRMFT+R+EYR+ LR DNAD R
Sbjct: 389 GINAVRSIDGKDPIVLDRADSYIGTLIDDLVLKGTNEPYRMFTARSEYRLVLREDNADLR 448

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS------KNLSSTSISFKQDG 499
           L+ IG ++G + E   ++     +    +   L+   +        + LS       +DG
Sbjct: 449 LSKIGYEVGLVSEEEYQKVETKRENVRNIIEALQQNFVGPGNPRVNERLSEKGEEILKDG 508

Query: 500 KTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
              + +E L  P+ + +++  +       D   +      ++++++ Y+ Y  R     +
Sbjct: 509 --ASLFEVLRRPEITYEDIEYMTEGTKTFDFTSYDEDTKYQVEVQTKYSGYIERSFKMIE 566

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + K  E++ IP+D DY SL  +  E KEKL  ++P N+ QAS+I G++PA + +LLIY+K
Sbjct: 567 KHKSMEEKRIPQDIDYDSLQNIPKEAKEKLKKIRPNNIGQASRISGVSPADIQVLLIYLK 626


>gi|148377441|ref|YP_001256317.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma agalactiae PG2]
 gi|205831536|sp|A5IXW3|MNMG_MYCAP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148291487|emb|CAL58872.1| Glucose inhibited division protein A [Mycoplasma agalactiae PG2]
          Length = 613

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/619 (38%), Positives = 349/619 (56%), Gaps = 12/619 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD IVIGGGHAG EAA   +  G +T L+T  +  +G M CNP+IGG  KG + RE
Sbjct: 1   MNKKYDAIVIGGGHAGLEAAFAISHKGRNTLLLTFNSKKLGMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN+ KGPAVR  R Q D+E Y       +L Q NL++++
Sbjct: 61  IDALGGMQGLWADLATIQLKMLNLSKGPAVRALRAQIDKEKYSQLAYEYVLKQPNLELLE 120

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G        E      +++++  +I     V+TTGT++   I  G+    +G   +  + 
Sbjct: 121 GVAEEVIVDENGYFKGVLVENIGLIEAKVCVITTGTYMNSRILRGQDITTSGPDNEKTTP 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S  K  F   RLKTGTP R+   +I +D+ E++   +  I FS  ++    +QI C
Sbjct: 181 KLSASLAKLGFTLQRLKTGTPPRIYSDSINFDEVEQEVLSDVNISFSSRSNLKKPKQIAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETHRII ENI  S +YSG I+  GPRYCPS+EDKIV+F ++  HQIF EPE  
Sbjct: 241 YLTYTTPETHRIIEENIHRSPMYSGVIEGIGPRYCPSVEDKIVKFPDKERHQIFFEPETA 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +  + + NG+ST++P ++Q   I++IPGL    + +  YAIEYD ++P +L  +LETK +
Sbjct: 301 DGAITHVNGLSTSMPIDVQELMIKSIPGLRNAKVQKWAYAIEYDALDPLQLKESLETKLV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAAAQGL+AGIN+A K    D I   R   YIGV+IDDL +KG 
Sbjct: 361 HNLFTAGQINGTSGYEEAAAQGLIAGINAALKLEDKDPIVILRNHGYIGVLIDDLVTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD+RL+      G I +   ++     +  +     L +
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADDRLSEYAYNSGMISKEEYQKVLDKYKLIDDEIQRLNT 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             L+ K+  +   +        T    +S PD    ++    P         +E +    
Sbjct: 481 TYLSGKSDVALKYNITNGS---TLLNVISRPDVDPSDIIPNFP--------YLEEITTMV 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q  +A +    E   IP+D +Y  +  ++ E ++K   ++P  + QAS+I G
Sbjct: 530 RLHGYIEKQKSDANKAVRLENLKIPEDLNYLDVKNIAIEARQKFEKIRPATIGQASRISG 589

Query: 601 MTPAALNLLLIYIKKNTVK 619
           + PA + +L+ +++    K
Sbjct: 590 INPADIQMLMFHLESRNKK 608


>gi|294155785|ref|YP_003560169.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma crocodyli MP145]
 gi|291599896|gb|ADE19392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma crocodyli MP145]
          Length = 612

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/615 (39%), Positives = 351/615 (57%), Gaps = 13/615 (2%)

Query: 1   MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           MIN+   YD IVIGGGHAG EA    A     TAL +   + + +M CNP+IGG  KG +
Sbjct: 1   MINKENEYDAIVIGGGHAGIEATFALANKDKKTALFSFNLNKLATMPCNPSIGGPAKGVI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            REIDAL G  G  AD A IQ ++LN  KGPAVR  R Q D+E Y   ++  +L+ E +D
Sbjct: 61  TREIDALGGQQGFFADNAMIQIKMLNESKGPAVRAIRAQIDKEKYSKLVKEAVLNHEYID 120

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
             +  V     + N I  I  +D    +   VV+TTGT++   I  G     +G  G+  
Sbjct: 121 AFEAIVTELVVDNNTIIGIKTEDGIFYKSKVVVITTGTYMSSRIIRGSDITYSGPDGEKT 180

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +N L +S     F+  RLKTGTP R+   +I + K EK+  D+  + FS  +     +QI
Sbjct: 181 TNKLSDSLRNIGFNLQRLKTGTPPRIYADSIDFSKVEKEKLDDSFLCFSSRSHIKLPKQI 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +TH +I +N+  S +YSG I+  GPRYCPSIEDKI+RF ++  HQIF EPE
Sbjct: 241 SCYLTYTNSKTHELIEQNVHLSGMYSGLIEGIGPRYCPSIEDKIMRFRDKERHQIFFEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
            L+  ++Y NG+ST+LP  IQ + I+TIPGLE   + +  YAIEYD ++P +L  +LETK
Sbjct: 301 TLDGSIIYINGLSTSLPISIQEKLIKTIPGLENAKVQKWAYAIEYDALDPLDLKASLETK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           KI+ LF AGQINGT+GYEEAAAQGL+AGIN+A K +  + +   R ++YIGV+IDDL +K
Sbjct: 361 KINNLFSAGQINGTSGYEEAAAQGLLAGINAALKIDCKEPLILKRHEAYIGVLIDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAEYR+ LR DN+D RL+    + G + E          ++ +     L
Sbjct: 421 GTKEPYRMLTSRAEYRLLLRNDNSDIRLSKYAYEQGLLTETEYNFIKNKYEKIDKKIEEL 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           K++ ++SK+  +            +  + ++ P+    +                  L +
Sbjct: 481 KNVFISSKDPLALKYGI---TNGVSMLKVIARPEVDANDFLG--------DFEFKNELVV 529

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
                 Y  +Q   A ++   E   IP + DY ++P ++ E K KL  + P  + QAS+I
Sbjct: 530 AIRLDGYIKKQQQSASKMIKLEALKIPTNIDYDNVPNIATEAKIKLKKILPLTIGQASRI 589

Query: 599 EGMTPAALNLLLIYI 613
            G+ PA + +L+ Y+
Sbjct: 590 SGINPADIQMLIFYL 604


>gi|326472355|gb|EGD96364.1| mitochondrial translation optimization protein [Trichophyton
           tonsurans CBS 112818]
          Length = 693

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/633 (45%), Positives = 391/633 (61%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEGK 154

Query: 124 VAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     K            I  + ++   +I    V++TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVISKENKTSLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDSV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF ++  
Sbjct: 275 QIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +IG
Sbjct: 393 SLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + + R ++F +  +
Sbjct: 453 IMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDERWRQFNETKE 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           + ++L++LL++    S   +      + D   R+A+E LS+   S+ ++      A    
Sbjct: 513 QMSYLQALLENTKHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIESAPGTI 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E ++
Sbjct: 573 HSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 633 VLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|269123889|ref|YP_003306466.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
 gi|268315215|gb|ACZ01589.1| glucose inhibited division protein A [Streptobacillus moniliformis
           DSM 12112]
          Length = 619

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/617 (39%), Positives = 357/617 (57%), Gaps = 8/617 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EA+  AA+LG   AL T     I  MSCNPAIGG GK H+V EI 
Sbjct: 2   QNYDIIVVGAGHAGVEASLAAARLGKKVALFTIYLDNIAMMSCNPAIGGPGKSHIVSEIG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M    D   +Q + LN  KG A +  R QAD+  YR+ M+  I  ++NLDVIQ  
Sbjct: 62  MLGGQMAVHIDKYNLQLKNLNHTKGLAAKITRAQADKYWYRIKMREIIEKEDNLDVIQNM 121

Query: 124 VAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V      +   +  ++           V+L TGTFL G   IG +K  AGR G+  SNSL
Sbjct: 122 VEDLILDDNKKVIGVIDALGLKYSAKAVILCTGTFLNGEYIIGDVKYSAGRQGEKASNSL 181

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            ++ +K+  +  R +T TP R+D K+I  D  EK + +     FS+M++K   + +E  +
Sbjct: 182 PDNLVKYGIEMDRYQTATPPRIDKKSINLDILEKLYGETNPRYFSYMSNKTDEKPLETWL 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ET ++  E +K+S I +G + + GPR+CPS++ KI+ F ++  HQIFLE E   +
Sbjct: 242 TFTTEETIKVGQELLKYSPIVTGIVSTKGPRHCPSLDRKIMNFPDKTDHQIFLEQESRES 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y NG +TA+P   Q + I+TI GLE   I+R GYA+EYD+I  ++L  +LE+K I  
Sbjct: 302 DEIYVNGFTTAMPPFAQEKLIKTIKGLENAKILRYGYAVEYDFIPARQLNFSLESKIIEN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AG INGT+GYEEAAAQG +AG+N+ARK +  + I  SR + YIGV+IDD+ +K   E
Sbjct: 362 LFQAGTINGTSGYEEAAAQGFIAGVNAARKIDGKEPIIISRDEGYIGVLIDDIINKETPE 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+  SRAEYR++LR DN   RL     ++G + + + K     IQ  +     LK + 
Sbjct: 422 PYRVLPSRAEYRLTLRQDNVFIRLLEKSKEIGLLDKSKLKELEDNIQIISDEIERLKEIK 481

Query: 483 LTSKNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +     ++  I  K D  T      TA+EFL+  + +  NL  +  + +    +  E+++
Sbjct: 482 IYPNKENNDIIK-KIDKNTSHNNVMTAFEFLARQEITYDNL-KLFIETKDLPEISKEQVE 539

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ Y  +  R+  + ++ K  E   IP+DF+Y  +  LSN     LS  KP N+ QA++
Sbjct: 540 IEAKYRIFIERERNQIEKFKKLENIAIPEDFNYEIVKGLSNIAISGLSYTKPKNIGQATR 599

Query: 598 IEGMTPAALNLLLIYIK 614
           I G+T   + +L+  +K
Sbjct: 600 ISGVTYNDIAILVSILK 616


>gi|311244465|ref|XP_003121457.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Sus scrofa]
          Length = 691

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/619 (44%), Positives = 386/619 (62%), Gaps = 25/619 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSI 137
           +KGPAV G R Q DR LY+  MQ+EIL+   L V +G V            T K  +  +
Sbjct: 117 RKGPAVWGLRAQIDRNLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPERTGKYRVCGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D + +   +VVLTTGTFLRGVI IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 177 VLVDGNTVYADSVVLTTGTFLRGVIVIGLETHPAGRLGDQPSVGLAQTLEKLGFVVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  ++I +    KQ  D   IPFSFM + +      Q+ C +T TN     I++
Sbjct: 237 TGTPPRIAKESINFSILNKQTPDNPSIPFSFMNETVWIKPEDQLPCHLTHTNPRVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  +          GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 297 ENLHLNCHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 354 PAELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +         SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 414 YEEAAAQGIMAGINASLRVRCKPPFVISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNADNRLT  G  + GC+ ++R +R +          S+LKS+  +S        
Sbjct: 474 LSLRPDNADNRLTFRGYKEAGCVSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKNLIP 533

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  +++L    P+  +K+S    + ERL+IE++Y A  
Sbjct: 534 EASISIGKSVPLR-ALDVLKYEEVDMKSLAKAVPEPLKKYSKCRELAERLKIEATYEAVL 592

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E KE++ +E   +P+D DY +L   +LS E++EKL   +P  +  AS+I G+TPA
Sbjct: 593 FHQQQEMKEVQRDEALRLPEDLDYLTLRDVSLSYEVREKLHFSRPQTIGAASRIPGVTPA 652

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A+  LL ++K    +   +
Sbjct: 653 AIINLLRFVKTTQQRQAAM 671


>gi|226294752|gb|EEH50172.1| mitochondrial translation optimization protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 695

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/632 (44%), Positives = 387/632 (61%), Gaps = 21/632 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QPYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL G VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  ++ +   L +++G+
Sbjct: 96  ALDGLAGDVADKAGIQFRILNRSKGEAVWGPRAQIDRILYRKHMLEKLSTTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      +          I  + ++   +I    VV+TTGTFL G IHIG    P+GRMG
Sbjct: 156 VGDIILSREGLAAGSQGKIIGVRLESGEVIPTGRVVITTGTFLGGEIHIGLDVFPSGRMG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-- 233
           ++ +  L  S  +  F  GRLKTGTP R++ K+I +   E    D   +PFS++  ++  
Sbjct: 216 EAATFGLSKSLREAGFQLGRLKTGTPPRIEKKSIDFSNLEVHPGDSPPVPFSYLNKRVAV 275

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C  T TN  +H+I+ +N+  S      +K  GPRYCPS+E KI+RF ++  H 
Sbjct: 276 NDEDQLPCWSTYTNEVSHQIVRDNLDKSVHIRETVK--GPRYCPSLESKIIRFKDKKRHI 333

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           ++LEPEG   + V YPNGIS  +P + Q   +RTIPGLE  ++++ GY +EYDY++P+ L
Sbjct: 334 VWLEPEGFAPNEVIYPNGISMTIPSDAQLALLRTIPGLENAHMLQAGYGVEYDYVDPRSL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 394 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPFILSRSDGFIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G ++G +G+RR   F++   + 
Sbjct: 454 VDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTARGREIGAVGDRRWNHFSQVEAQI 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----- 526
             LR+LL++    S   S        D   R+A++ L   D SI ++             
Sbjct: 514 TELRTLLENTKFPSALWSRKGFGVHGDNNLRSAFDLLRLNDTSIDDIIPHIESGSGRTYT 573

Query: 527 --KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
              F+S +  R+ IE  YA Y      +A+  + +E  L+P D DY  +  LS E +  L
Sbjct: 574 PLSFTSEIKHRVAIEGRYAPYIKIHADKARSFEKDESLLLPPDMDYGQVVGLSYEERAAL 633

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             ++P N+  A +IEGMTP A   LL+++++N
Sbjct: 634 ERVRPENIGMARRIEGMTPVAALRLLVHVRRN 665


>gi|320527142|ref|ZP_08028329.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Solobacterium moorei F0204]
 gi|320132470|gb|EFW25013.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Solobacterium moorei F0204]
          Length = 624

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/624 (39%), Positives = 363/624 (58%), Gaps = 11/624 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D+IVIGGGHAG EAA  AA+L  +T L+T K   IG M CNP++GG  KG +VREIDA
Sbjct: 3   DFDIIVIGGGHAGIEAALAAARLKKNTCLLTLKIENIGKMPCNPSVGGPAKGIVVREIDA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G M   AD   +QF++LN  KGP VR  R Q+D+  Y+  MQ   L QENL VI+G  
Sbjct: 63  LGGQMAITADKTALQFKMLNGAKGPGVRALRVQSDKLAYKKMMQDVCLKQENLTVIEGMA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +  N   N ++ + ++D +++    V++TTGT++ GV  I     P G   +  +  L  
Sbjct: 123 SKLNVTNNKVTGVTLKDGTVLNAKIVIVTTGTYMAGVNMISSEVTPGGPDLEPTTGDLSE 182

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIEC 240
           S  +    T RLKTGTP R+   +I + KT+ +   E  + FS +T +      ++Q+ C
Sbjct: 183 SLRELGLRTFRLKTGTPPRILRSSIDFSKTKLEPGTEGFLHFSELTTREDVLPYDKQVSC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T  ETH  I+EN+  S++YSG +K  GPRYCPSIEDK+VRF ++  H +FLEPE L
Sbjct: 243 HMTYTTPETHEYILENLNKSSMYSGVVKGVGPRYCPSIEDKLVRFQDKPRHLLFLEPESL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D +Y  G ST+LP +IQ + + ++PG E   I +  YAIEYD I+P ++ P+ E+K I
Sbjct: 303 ELDTIYLQGFSTSLPRDIQEKMVHSLPGFENAIIKKYAYAIEYDAIDPIQMKPSFESKII 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+  K +  + +  +R ++YIGV++DDLT+KG 
Sbjct: 363 ENLFTAGQVNGTSGYEEAAGQGLLAGINACMKLDGKEPLILARNEAYIGVLVDDLTTKGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYR+ TSRAE+R+ LR DNAD RL   G ++G + + R   +   ++    L   L  
Sbjct: 423 LEPYRLLTSRAEFRLLLRHDNADQRLIEYGRQIGLVSQERYDAYLAKMENIKKLEQHLSE 482

Query: 481 LVLTSKNLSS----TSISFKQDGKT-RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
                         TS+ ++ D        + +  P+ + + L +   +  +    +  +
Sbjct: 483 TTFVQDEEKVHAYLTSLGYESDAHIGINGIDLVRRPNVTTKELLATIGE--EADEEIANQ 540

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             IE  YA Y  +   EA ++K  +   +  +F+Y  +  LS E ++KL   KP  + QA
Sbjct: 541 CDIELKYAGYIEKAKREANKLKEMDSIKLGVNFNYDEVDNLSIEGRQKLMKYKPATMGQA 600

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
            +I G+ PA + +L I IK+   +
Sbjct: 601 FRISGVNPADIAVLAIAIKQGKGR 624


>gi|257124823|ref|YP_003162937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia buccalis C-1013-b]
 gi|257048762|gb|ACV37946.1| glucose inhibited division protein A [Leptotrichia buccalis
           C-1013-b]
          Length = 630

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/629 (38%), Positives = 350/629 (55%), Gaps = 19/629 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EAA  AA+ G  TAL T     I  MSCNP++GG GK HLV E+ 
Sbjct: 2   KNYDIIVVGAGHAGVEAALAAARHGLKTALFTIYLDNIAMMSCNPSVGGPGKSHLVSELG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  I  QENLD++QG 
Sbjct: 62  MLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYWYRIKMREIIEKQENLDLVQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +            VVL TGTFL G   +G +K  +GR G+  S  L 
Sbjct: 122 VVDLIVENKKVMGVEDNLGIKYGAKAVVLCTGTFLDGEYVMGDVKYSSGRQGEPASVDLP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  +++ F+  R +T TP R+D  +I + KTE+   +++   FS+ T K  N  +   +T
Sbjct: 182 DRLVEYGFELDRYQTATPPRIDKSSIDFSKTEELKGEDKPRYFSYETKKEYNSTLPTWLT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ET R+  E +K+S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + +D
Sbjct: 242 FTTPETIRVGQEMLKYSPIVTGIVSTKGPRHCPSLDRKIMNFPEKTNHQIFLEQESVESD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y NG +TA+P   Q   ++TI GLE   I+R GYA+EY+++   +L  TLETK + GL
Sbjct: 302 EIYINGFTTAMPPFAQEAMLKTISGLENAKIVRYGYAVEYNFVPAYQLKLTLETKVLDGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AG INGT+GYEEAA QG +AG+N+ARK      I   R++ YIGV+IDD+ +K   EP
Sbjct: 362 YTAGTINGTSGYEEAACQGFMAGVNAARKILGKKEIVIDRSEGYIGVLIDDIINKKTPEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YR+  SRAEYR++LR DN   RL     ++G +   +        QE       LKS+ +
Sbjct: 422 YRVLPSRAEYRLTLRQDNIFIRLLEKAKEIGLLNAEKLTELENTCQEIENEIERLKSITV 481

Query: 484 TS-------------KNLSSTSISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDA 525
                          K   S S   ++  K       +A+EFL+  + +  NL       
Sbjct: 482 YPTKENNEKLLEIVEKQNQSESAEIEKTSKNSMNSPVSAFEFLARKEINYNNLSEFVKTV 541

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
            K S L  E+++I + Y  +  R+  + ++ K  EK +IPKDFDY S+  LSN     L 
Sbjct: 542 -KLSDLAKEQVEINAKYNVFIEREKAQIEKFKKLEKMIIPKDFDYESVKGLSNIAISGLI 600

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +P  + QAS+I G+T   ++LL+  +K
Sbjct: 601 YGQPETIGQASRISGVTYNDISLLIAILK 629


>gi|257465888|ref|ZP_05630199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917044|ref|ZP_07913284.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690919|gb|EFS27754.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 630

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/600 (42%), Positives = 355/600 (59%), Gaps = 17/600 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TA+ T     IG MSCNP++GG  K HLVREIDAL G MGR  D   IQ RVLN KKGP
Sbjct: 29  KTAIFTISLDNIGVMSCNPSLGGPAKSHLVREIDALGGEMGRNIDKTYIQIRVLNTKKGP 88

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVR  R QAD+  Y   M+R I + ENL  IQG V+    E      I +++    R   
Sbjct: 89  AVRSLRAQADKIRYAKEMKRTIETCENLSAIQGMVSELLVEDGKAVGIKIREGVEYRAKR 148

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           ++L TGTFLRG+IHIG+     GRMG+  S  L  S +K   D  R KTGTP+R+D +TI
Sbjct: 149 IILATGTFLRGLIHIGESHFSGGRMGELSSEDLPLSLLKHGLDLQRFKTGTPSRIDARTI 208

Query: 210 IWDKTEKQFAD-ERLIPFSFMT---DKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +   E+Q  +  +++ FS  T   +    RQI C I  TN E H  I  N + S +++G
Sbjct: 209 DFSVLEEQPGETAKILKFSNRTSDKELKDRRQISCYIAHTNEEVHTEIKNNRERSPLFNG 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+ R+ ++  H +FLE EG +T+ +Y  G+S++LP ++Q   I  
Sbjct: 269 TIQGLGPRYCPSIEDKVYRYADKPQHHLFLEREGYDTNEIYLGGLSSSLPVDVQENMIHK 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G E+  I+R GYAIEYDYI P E+  +LE++ I  LFLAGQINGT+GYEEA AQGL+A
Sbjct: 329 IHGFEQARIMRYGYAIEYDYIPPSEIQYSLESRTIPNLFLAGQINGTSGYEEAGAQGLMA 388

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+ R  +  D I   R DSYIG +IDDL  KG  EPYRMFT+R+EYR+ LR DNAD R
Sbjct: 389 GINAVRSIDGKDPIILDRADSYIGTLIDDLVLKGTNEPYRMFTARSEYRLVLREDNADLR 448

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS------KNLSSTSISFKQDG 499
           L+ IG ++G + E   ++     +    +   L+   +        + LS       +DG
Sbjct: 449 LSKIGYEVGLVSEEEYQKVEAKRENVRKIIEALQQNFVGPGNPRVNERLSEKGEQILKDG 508

Query: 500 KTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
              + +E L  P+ + +++  +       D   +      ++++++ Y+ Y  R     +
Sbjct: 509 --ASLFEVLRRPEITYEDVEYMTEGTKTFDFTSYDEDTKYQVEVQTKYSGYIERSFKMIE 566

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + K  E++ IP+D DY SL  +  E KEKL  ++P N+ QAS+I G++PA + +LLIY+K
Sbjct: 567 KHKSMEEKRIPQDIDYDSLQNIPKEAKEKLKKIRPNNIGQASRISGVSPADIQVLLIYLK 626


>gi|171920648|ref|ZP_02931885.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867356|ref|ZP_03079360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|171903380|gb|EDT49669.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195660832|gb|EDX54085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 614

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/614 (40%), Positives = 365/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I    V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIHADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           NS  K  F+  RLKTGTPAR+   +I +     +    + I F+      K    Q+ C 
Sbjct: 182 NSLAKLGFELIRLKTGTPARIKKDSIDFTNMIVEPGTNQKIAFNHYHPTYKPYEEQVPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNETTHQIIRENLDKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLEDCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN ++K    + I   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVSQKHKNKEPIVLGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++ N + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQINEVLNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEVKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKKLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|185178729|ref|ZP_02964544.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024346|ref|ZP_02997018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518461|ref|ZP_03003948.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524182|ref|ZP_03004246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273495|ref|ZP_03206031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554149|ref|YP_002284456.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225551143|ref|ZP_03772089.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|226700965|sp|B5ZAL6|MNMG_UREU1 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|184209330|gb|EDU06373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018610|gb|EDU56650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998104|gb|EDU67201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659997|gb|EDX53377.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198250015|gb|EDY74795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541650|gb|ACI59879.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378958|gb|EEH01323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 614

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/614 (40%), Positives = 369/614 (60%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           +  +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  ++Q+ C 
Sbjct: 182 DVLVKLGFELIRLKTGTPARIKKDSIDFTNMVLEPGTNQKIAFSHYHPVYKPYDKQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLEDCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN ++K    + I   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVSQKHKNKEPIVLGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++ N + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQINEVLNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEVKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|13357595|ref|NP_077869.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762033|ref|YP_001752118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13626942|sp|Q9PRA6|MNMG_UREPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|189039365|sp|B1AI24|MNMG_UREP2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|11277859|pir||D82942 glucose inhibited division protein UU039 [imported] - Ureaplasma
           urealyticum
 gi|6898986|gb|AAF30444.1|AE002103_9 glucose inhibited division protein [Ureaplasma parvum serovar 3
           str. ATCC 700970]
 gi|168827610|gb|ACA32872.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 3 str. ATCC 27815]
          Length = 614

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/614 (40%), Positives = 367/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +V+ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K ++
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVN 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++   + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|281182426|ref|NP_001162543.1| protein MTO1 homolog, mitochondrial [Papio anubis]
 gi|163781002|gb|ABY40783.1| mitochondrial translation optimization 1 homolog, isoform 1
           (predicted) [Papio anubis]
          Length = 717

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/666 (42%), Positives = 401/666 (60%), Gaps = 51/666 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLEMHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+   +I +    KQ  D   +PFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKDSINFSILNKQTPDNPSVPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR----------------- 336
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+                 
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGVI 392

Query: 337 --------PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
                   PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN
Sbjct: 393 LPHHNLSLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGIN 452

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT 
Sbjct: 453 ASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADIRLTL 512

Query: 449 IGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---A 504
            G K  GC+ ++R +R            S+LKS+  +S    +                A
Sbjct: 513 RGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFSSSKWKNLIPEVSISTSRSLPVRA 572

Query: 505 YEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KN 616
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K   + 
Sbjct: 633 LQLPKDIDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQR 692

Query: 617 TVKLNE 622
              +NE
Sbjct: 693 QAAMNE 698


>gi|269791623|ref|YP_003316527.1| glucose inhibited division protein A [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099258|gb|ACZ18245.1| glucose inhibited division protein A [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 622

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/603 (39%), Positives = 343/603 (56%), Gaps = 5/603 (0%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEAA  +A++G  T L+         M+CNP+IGG  KGHL RE+DA+ G   + AD
Sbjct: 17  HAGCEAALASARMGVRTLLLNMNLENTALMACNPSIGGPAKGHLTREVDAMGGFQAKAAD 76

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
            + +  R LN  KGPAVR  R Q D   +  A + ++ SQ NL V+Q E      E   I
Sbjct: 77  RSALHVRWLNTSKGPAVRTLRIQCDMWEFHRAYRLQVESQPNLHVLQAEAVDLWVEDRRI 136

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
             +      ++ C  V+L+ GT+    ++IG  +  AG MG+  S  L  S M      G
Sbjct: 137 RGVRTSLGQVVECLAVILSPGTYSGARVYIGLDRFQAGPMGNLGSYRLAESLMSLGLKLG 196

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           RLKTGTP RL   +I WD    Q  +E     S  ++        CG TRTNLETHRII+
Sbjct: 197 RLKTGTPPRLHRDSIDWDSIPHQEGEEEPCAMSVFSEPRVVSGFFCGCTRTNLETHRIII 256

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           E +  S +Y+G I+  GPRYCPSIEDK+VRF  R+ H +FLEP G +++ VY    ST+L
Sbjct: 257 EALDRSPLYTGLIEGVGPRYCPSIEDKVVRFPHRDSHPVFLEPVGKDSNEVYVQNFSTSL 316

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P ++Q + +RT+PG E   I++PGYAIEY Y +P++L P LE K ++GLF+AGQ+NGT+G
Sbjct: 317 PYDVQVRMVRTLPGCEGARILKPGYAIEYWYSDPRQLEPWLEVKGLAGLFMAGQVNGTSG 376

Query: 375 YEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           YEEAA+QGLVAG+N A ++    +     R ++Y+GV+IDDL +KG  EPYRM TSR E+
Sbjct: 377 YEEAASQGLVAGVNGALRAMGVNEPFVLGRHEAYVGVLIDDLVTKGTDEPYRMLTSRCEH 436

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSST 491
           R+ LR DNAD RL+    +LG + +         +++   LR  L+  VL     N    
Sbjct: 437 RLRLRHDNADRRLSFRARELGLLDDLSWGVVMSRMEDQRKLREALEGAVLKPDFVNPRLR 496

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +      +   A E L  P+ + + L  +        S     +++E  Y  Y  R+  
Sbjct: 497 ELGSSPVEEPVRALELLRRPEVTWETLRDLT--RIGGPSESWRSVEVEEKYRGYVAREDR 554

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
             + +   ++  IP+ FD+ S+  L  E  EKL+ ++P  L QAS+I G+TPA + L+ +
Sbjct: 555 RVERMSRMDQVRIPEGFDFGSVRGLLRESLEKLNRVRPRTLGQASRISGVTPADVELIWM 614

Query: 612 YIK 614
           +++
Sbjct: 615 HLE 617


>gi|328858224|gb|EGG07337.1| hypothetical protein MELLADRAFT_62641 [Melampsora larici-populina
           98AG31]
          Length = 665

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/625 (43%), Positives = 384/625 (61%), Gaps = 15/625 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YDVIV+GGGHAG EAA+ AA+  AST L+T+   T+G MSCNP+ GG+GKG LVREID
Sbjct: 38  NEYDVIVLGGGHAGTEAASGAARCNASTLLVTNSWKTVGEMSCNPSFGGIGKGTLVREID 97

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+  D AGI F++LN  KGPAV GPR Q DR+LY+ ++Q ++     L + +G 
Sbjct: 98  ALGGICGKACDEAGIVFQMLNRSKGPAVYGPRAQMDRQLYKQSVQNQLQKFNQLAIKEGT 157

Query: 124 VAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V     E +            +S + +    +I+C ++V+ TGTFL G IHIG    P G
Sbjct: 158 VTDLILEHDNLLHRSSGHQARVSGLKLDTGEIIKCKSLVIATGTFLGGEIHIGMKSSPFG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+S S SL NS     F   RLKTGTP RL   TI +     Q  D+   PFSFM   
Sbjct: 218 RIGESSSTSLSNSLKNVGFKLERLKTGTPPRLLKNTINFSNLFIQNGDQPPTPFSFMNQT 277

Query: 233 ITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           + N   Q+ C  T TN +TH I+ +N+  +     ++   GPRYCPS+E K+V+F +R+ 
Sbjct: 278 VQNATNQLCCWKTHTNAQTHDIVRKNLDKTVHIREEV--RGPRYCPSLESKVVKFPDRDS 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H I+LEPEG  +D++YPNG+ST +P + Q Q +R+I GLE V I +PGY +EYD+++PKE
Sbjct: 336 HMIWLEPEGYESDLIYPNGLSTTIPPDAQLQMLRSIQGLEAVEIHQPGYGVEYDHVDPKE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK+I GLFLAGQINGTTGYEEA AQG++AGIN+   S     +  +R DS+IGV
Sbjct: 396 LTNTLETKRIKGLFLAGQINGTTGYEEAGAQGVLAGINAGLSSQNALPLILTRADSFIGV 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KGV EPYRMFTSR+E+R+SLR DNAD RLT    ++G I E R     +   +
Sbjct: 456 LVDDLITKGVQEPYRMFTSRSEFRVSLRADNADLRLTKKARQVGVIDEDRWATVERTKTQ 515

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
            +     L+++ L+ +  S   I  ++D   ++A++ L      I+ L    P  +    
Sbjct: 516 IDRSIEALQAVCLSQRAWSQVGIKVREDASLKSAFDVLRVQGVKIEQLCETVPQLKNVDP 575

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +  R+++E+ Y     R    A++++ +E   +P + DY +L  LS E + +L   +P 
Sbjct: 576 DIWRRIEVEALYRPIANRYEHNARQLEADELCRLPPNLDYHTLEYLSIEARHRLDSARPE 635

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            L  A ++EG+ P AL LL  ++++
Sbjct: 636 TLGAAKRLEGIDPNALILLSKHLRQ 660


>gi|225550750|ref|ZP_03771699.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225379904|gb|EEH02266.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 614

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/614 (40%), Positives = 368/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+VADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKVADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  +++ D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  ++Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFINMVLEPGTNQKIAFSHYHPVYKPYDKQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG K+G +      ++   +++   + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFKIGLLKPEVYDQYLNNLKQIKEILNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|189190196|ref|XP_001931437.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973043|gb|EDU40542.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 657

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/637 (44%), Positives = 399/637 (62%), Gaps = 14/637 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDVIVIGGGHAGCEA+A AA+ GA TALIT     +G  SCNP+ GG+GKG ++R
Sbjct: 1   MRHAPYDVIVIGGGHAGCEASAAAARSGARTALITPSVHNLGVCSCNPSFGGIGKGTMIR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EID+LDG++GR+ D AG+QFRVLN KKGPAV GPR Q DR LY+  M+ EIL  + L V+
Sbjct: 61  EIDSLDGVVGRIVDKAGVQFRVLNRKKGPAVWGPRAQIDRALYKEYMKNEILGYKGLSVV 120

Query: 121 QGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           +G VA    +++           I+ + ++   +I+   VV+TTGTFL G IHIG    P
Sbjct: 121 EGSVADIIVDRSQEEGSKGQYGRITGVRLESGEIIQTENVVITTGTFLGGEIHIGLEAYP 180

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           +GRMG++ +  L  S     F  GRLKTGTP RLD  TI +   E Q  D   +PFS++ 
Sbjct: 181 SGRMGEAATFGLSKSLKDAGFTLGRLKTGTPPRLDANTIDYKVLEAQEGDYPPMPFSYLN 240

Query: 231 DKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +++   +Q+    TRTN  TH II +N+  S      +K  GPRYCPS+E K++RF ++ 
Sbjct: 241 ERVQVEKQLLNHETRTNEATHDIIRQNLDKSIHIRETVK--GPRYCPSLESKVIRFADKT 298

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG N +VVYPNGIS  +P ++Q+  ++TI GLE V++++PGY +EYDY++P+
Sbjct: 299 SHIIWLEPEGFNNNVVYPNGISCTVPADVQNTMLKTIKGLENVSMLQPGYGVEYDYVDPR 358

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S   + +  +R D YIG
Sbjct: 359 HLRSTLETKNISGLFLAGQINGTTGYEEAAGQGIIAGINAGLRSLGKEPMTLTRADGYIG 418

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFTSR+EYR+S R DNAD RLT +G   G I + R K F++  +
Sbjct: 419 IMIDDLITKGVSEPYRMFTSRSEYRMSARADNADVRLTALGRAAGVISDARWKAFSEEAE 478

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           +   L   L+   +   + +      + D   R+AY+ L  P+ + Q+L  +  +   F 
Sbjct: 479 QMAALTKALQDKKMGWTDWNKHGFKVRNDSTKRSAYDLLRLPNTTPQSLLPLIAEISSFP 538

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             + +R+ I ++YA Y   Q +       +E   +P D DY S+  LS E K  L + +P
Sbjct: 539 QHIQDRVHINATYAPYVEYQAVSQARWLKDENLKLPDDLDYESIFGLSFEEKRALEVARP 598

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIVLV 626
            ++  A ++EG+TP     LL Y+ +   K  ++   
Sbjct: 599 ESVGMARRVEGVTPTGALRLLQYV-RGAGKEEKMAKA 634


>gi|284005465|ref|NP_001164763.1| protein MTO1 homolog, mitochondrial [Oryctolagus cuniculus]
 gi|217030840|gb|ACJ74004.1| mitochondrial translation optimization 1 homolog isoform a
           (predicted) [Oryctolagus cuniculus]
          Length = 678

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/622 (43%), Positives = 393/622 (63%), Gaps = 28/622 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V              K  +S +
Sbjct: 117 RKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILSEPEPEHPGKCRVSGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +V+LTTGTFLRG + IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 177 VLVDGSTVYADSVILTTGTFLRGTVVIGLEMHPAGRLGDQPSIGLAQTLEKLGFAVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  ++I +    KQ  D+   PFSF+ + +      Q+ C +T TN +   I++
Sbjct: 237 TGTPPRIAKESINFSILNKQTPDDPPKPFSFINETVWIKPEDQLPCYMTHTNPKVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEGL++D++YP G+S  L
Sbjct: 297 ENLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGLDSDLIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 354 PAELQEKMIACIRGLEKAKMIQPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 414 YEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNAD+RLT  G  + GC+ ++R +R            S+LKS+  +S        
Sbjct: 474 LSLRPDNADSRLTFRGYEEAGCVSQQRYERACWMKSSLEEGISVLKSIEFSSYKWKQLIP 533

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-RKFS--SLVIERLQIESSYAAYT 546
             SIS  +     +A + L + +  +++L  + PD  +K++    + ERL+IE++Y +  
Sbjct: 534 EASISITK-SHPVSALDVLKHEEVDMESLAKVVPDLFKKYTQCRELAERLKIEAAYESVV 592

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E KE++ +E   +PKD DY ++   +LS E++EKL   +P  +  AS+I G+TPA
Sbjct: 593 FHQLQEIKEVQRDETLQLPKDLDYLTIKDVSLSQEVREKLHFSRPQTIGAASRIPGVTPA 652

Query: 605 ALNLLLIYIK---KNTVKLNEI 623
           A+  LL ++K   +    +NE+
Sbjct: 653 AIVNLLRFVKTTQQRQATVNEL 674


>gi|145631884|ref|ZP_01787641.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R3021]
 gi|144982487|gb|EDJ90050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Haemophilus influenzae R3021]
          Length = 505

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/486 (53%), Positives = 325/486 (66%), Gaps = 1/486 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +     R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLTFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     + Q I C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPVFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITHTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++ VYPNGIST+LP ++Q   + ++ GLEK  II+PGYAIEYDY +P++L PTLETK I
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKGLEKARIIKPGYAIEYDYFDPRDLKPTLETKSI 362

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQINGTTGYEEAAAQGL+AGIN+     + +     R  SY GV++DDL + G 
Sbjct: 363 SGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQEKEAWYPRRDQSYTGVLVDDLCTLGT 422

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+FTSRAEYR+ LR DNAD RLTPI  +LG I E R  RF + ++     R  L+S
Sbjct: 423 KEPYRVFTSRAEYRLLLREDNADIRLTPIAHELGLIDEARWVRFNQKMENIELERQRLRS 482

Query: 481 LVLTSK 486
           + L  +
Sbjct: 483 IWLHPR 488


>gi|50289417|ref|XP_447140.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526449|emb|CAG60073.1| unnamed protein product [Candida glabrata]
          Length = 663

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/629 (45%), Positives = 398/629 (63%), Gaps = 13/629 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DV+VIGGGHAGCEAA  AA+ GA T L+T     IG+ SCNP+IGG+GKG L++E+D
Sbjct: 35  EEHDVVVIGGGHAGCEAATAAARSGARTVLVTPFLDKIGTCSCNPSIGGVGKGTLIKEVD 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GRV D AGI F++LN  KG AV GPR Q DR LY   MQ  + +  NL + + +
Sbjct: 95  ALDGVAGRVTDKAGIHFKMLNQSKGAAVWGPRAQIDRNLYLKEMQSILSNYPNLQLQEAK 154

Query: 124 VAGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           V     +K      ++  +V++D++++R   VV+TTGTFL   IHIG   IPAGR+G+ P
Sbjct: 155 VKDLLLDKEHGDKTVVHGVVLEDSTIMRTRKVVITTGTFLSAEIHIGMKCIPAGRIGEEP 214

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-Q 237
           +  L  +  +  F  GRLKTGTPARLDGKTI +   EKQ+ DE   P SF+ + +    Q
Sbjct: 215 TYGLSKTLKEIGFKLGRLKTGTPARLDGKTIDFSNLEKQYPDEVPHPMSFLNNNVAVETQ 274

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C  T T  E H  + +N+  S      IK  GPRYCPSIE KI+RF ++  H+I+LE 
Sbjct: 275 LLCYGTTTTPELHEYLRQNLDKSLHIRETIK--GPRYCPSIEAKILRFADKQSHKIWLES 332

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL+TDV+YPNGIS ++PE++Q + +R +PGLE V II P Y +EYDYI P +L   LET
Sbjct: 333 EGLDTDVIYPNGISNSMPEDVQLKMMRMVPGLENVRIIHPAYGVEYDYIEPTQLNHNLET 392

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ++GL+LAGQINGTTGYEEA AQG++AG N+   S   D I  SR+D+YIGV+IDDL +
Sbjct: 393 KLVNGLYLAGQINGTTGYEEACAQGVIAGANAGLSSKNRDQIILSRSDAYIGVLIDDLVT 452

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            GV+EPYRMFTSR+E+RI+ R +NAD RLTPIG K G + + R  RF      +   ++ 
Sbjct: 453 NGVVEPYRMFTSRSEFRITTRAENADFRLTPIGRKYGIVDDTRWSRFNNDKHIFEKFKTK 512

Query: 478 LKSLVLTSKNLS-STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA----RKFSSLV 532
           LK+  L++   +    I      K RTA+E   Y D +++ L    P+         + V
Sbjct: 513 LKNFDLSASKWNQKLGIRIADSAKNRTAWEVFRYNDITLRYLAVKIPELDIDINAIPNHV 572

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
             +L +E  Y  Y  +Q    +  + +E+ L+PK FDYS++P LS+E K  L+ ++P  +
Sbjct: 573 SLKLDVEGKYEPYIVKQNQFVRAFQADEQMLLPKKFDYSNIPTLSSECKMLLNSIQPNTI 632

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            QA +I+G+T AAL  L   ++    +L 
Sbjct: 633 GQARRIQGVTAAALFELYKLVRPRQAELK 661


>gi|183508643|ref|ZP_02958143.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182676109|gb|EDT88014.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 614

 Score =  663 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/614 (40%), Positives = 366/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQINLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NI+  ++++D  +I+   V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIVKGVILRDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F+  RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKSVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++   + S LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLRQIKEILSWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHGIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|146278699|ref|YP_001168858.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacter sphaeroides ATCC 17025]
 gi|205375710|sp|A4WVY9|MNMG_RHOS5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|145556940|gb|ABP71553.1| glucose inhibited division protein A [Rhodobacter sphaeroides ATCC
           17025]
          Length = 624

 Score =  663 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/619 (54%), Positives = 433/619 (69%), Gaps = 1/619 (0%)

Query: 1   MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M +    DVIVIGGGHAGCEAAA AA++G   AL+T + S +G MSCNPAIGGLGKGHLV
Sbjct: 1   MFHVKQFDVIVIGGGHAGCEAAAAAARMGVRAALVTLRPSDLGVMSCNPAIGGLGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           REIDALDGLMGR ADAAGIQFR+LN KKGPAV+GPR QADR LYR AMQR +L Q  LDV
Sbjct: 61  REIDALDGLMGRAADAAGIQFRLLNRKKGPAVQGPRAQADRRLYRAAMQRFLLEQPGLDV 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++GEV     ++   + +++ D + +    VVLT+GTFL G IHIG  + P GRMGD PS
Sbjct: 121 VEGEVVDLLLDQGTATGVLLADGTRLDAKAVVLTSGTFLNGTIHIGHDRRPGGRMGDLPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L    M  +   GRLKTGTP RLDG+TI W + E Q  D   + FSF+      RQI 
Sbjct: 181 IPLAQRLMDLNLSRGRLKTGTPPRLDGRTIDWTQLEMQPGDADPVMFSFLNHAPVARQIS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT TN  TH I+ +N+  SA+Y G I+  GPRYCPSIEDKIVRF ++ GHQ+FLEPEG
Sbjct: 241 CGITSTNERTHEIVRDNLHQSAMYGGHIEGVGPRYCPSIEDKIVRFADKTGHQVFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   VYPNGIST+LP E+Q  ++RTI GLE+V I++PGYAIEYDY +P+EL PTLE K 
Sbjct: 301 LDDHTVYPNGISTSLPAEVQESYVRTIAGLEEVKILQPGYAIEYDYFDPRELRPTLEVKA 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAAAQGL AG+N+A      + + FSR+DSYIGVMIDDLTS+G
Sbjct: 361 MCGLYFAGQINGTTGYEEAAAQGLAAGLNAALAVRGREPLHFSRSDSYIGVMIDDLTSRG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYRMFTSRAE+R+SLR DNAD RLT  G+ LGC+G  R+  F   +   +  R++L+
Sbjct: 421 VTEPYRMFTSRAEFRLSLRADNADQRLTQTGIDLGCVGPARRDAFLTKMDSLSRGRTMLQ 480

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
            ++LT  +L+   I   QDG  R+A++ +++ + +   +    P+       + ++L  +
Sbjct: 481 QVMLTPTDLARLEIRISQDGTRRSAFDVMAFGEEAASAVERAVPELALLPHDIRQQLARD 540

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA +  RQ +EA+ +K +E   IP DFDY SL  LS+EL  KL   +P  + QA+++E
Sbjct: 541 ALYAQFIARQELEAQSLKRDEAVRIPSDFDYGSLSGLSHELTAKLLHARPATIAQAARLE 600

Query: 600 GMTPAALNLLLIYIKKNTV 618
           GMTP+AL L+L  +++ + 
Sbjct: 601 GMTPSALMLILSRLRRASR 619


>gi|189464898|ref|ZP_03013683.1| hypothetical protein BACINT_01242 [Bacteroides intestinalis DSM
           17393]
 gi|189437172|gb|EDV06157.1| hypothetical protein BACINT_01242 [Bacteroides intestinalis DSM
           17393]
          Length = 624

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/620 (41%), Positives = 369/620 (59%), Gaps = 10/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG GHAGCEAAA AA LG+ T LIT   + IG MSCNPAIGG+ KG +VRE
Sbjct: 1   MEFKYDVIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIGQMSCNPAIGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG V D   IQFR+LN  KGPA+  PR Q DR  +  A +  + +  NL + Q
Sbjct: 61  VDALGGYMGLVTDQTAIQFRILNRSKGPAMWSPRAQCDRNKFIWAWREILENIPNLHIWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E   I+ +    +   R   ++LT GTFL G++HIG+ ++  GRM +  S  
Sbjct: 121 DTVREILVENGEITGLTTFLDVTFRAKCIILTAGTFLNGLMHIGRTQLAGGRMAEPASYE 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIEC 240
           L  S  +   + GR+KTGTP R+DG+++ ++  E Q  +     FSFM   + + +Q+ C
Sbjct: 181 LTESIARHGIEYGRMKTGTPVRIDGRSVHYEYMETQDGECDFHKFSFMDTSVRHLKQLPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E HR++ E +  S +++G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 WTCFTNEEVHRVLREGLPDSPLFNGQIQSIGPRYCPSIETKIVTFPDKEQHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            T  +Y NG S++LP  IQ + ++ +P  + + I RPGYAIEYDY +P +L  TLE+K+I
Sbjct: 301 TTQELYLNGFSSSLPMNIQIEALKKVPAFKDLVIYRPGYAIEYDYFDPTQLKHTLESKRI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGTTGYEEAA QG++AGIN+    +  +    +R ++YIGV+IDDL +KGV
Sbjct: 361 KNLFFAGQVNGTTGYEEAAGQGIIAGINAHINCHGGEPFTLARDEAYIGVLIDDLVTKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLT    KLG + E R +   +  +  + +    ++
Sbjct: 421 DEPYRMFTSRAEYRILLRMDDADMRLTEKAWKLGLVKEDRYELLKRKREAISNIVEFTRN 480

Query: 481 LVLTSK--NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-------KFSSL 531
             +     N     +      +     + ++ P  +++N+       R       +    
Sbjct: 481 YSMKPALINPVLEQLGTTPLRQGCKLIDLINRPQVTLENMAEHVDAFRRELNKVTERKEE 540

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +IE  +I   Y  Y GR+ I A ++   E   I   F+Y+S+ +LS E ++KL  + P  
Sbjct: 541 IIEAAEILIKYEGYIGRERIIADKLARLESIKIKGKFNYNSIQSLSTEARQKLVKIDPET 600

Query: 592 LLQASKIEGMTPAALNLLLI 611
           + QAS+I G++P+ +N+LL+
Sbjct: 601 IAQASRIPGVSPSDINVLLV 620


>gi|326484523|gb|EGE08533.1| mitochondrial translation optimization protein [Trichophyton
           equinum CBS 127.97]
          Length = 693

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/633 (45%), Positives = 389/633 (61%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEGK 154

Query: 124 VAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     K            I  + ++   +I    V++TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVISKENKTSLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDSV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF  +  
Sbjct: 275 QIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKNKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +IG
Sbjct: 393 SLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + + R ++F +  +
Sbjct: 453 IMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDERWRQFNETKE 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           + ++L++LL++    S   +      + D   R+A+E LS+   S  ++      A    
Sbjct: 513 QMSYLQALLENTKHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSPDDVIPHIESAPGTI 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E ++
Sbjct: 573 HSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEERQ 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 633 VLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|307298513|ref|ZP_07578316.1| glucose inhibited division protein A [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915678|gb|EFN46062.1| glucose inhibited division protein A [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 628

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/623 (40%), Positives = 358/623 (57%), Gaps = 7/623 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +D+IVIG GHAG EAA   A++G  T ++     T+G   CNPA+GG  KG +VREI
Sbjct: 7   DYEFDIIVIGAGHAGIEAAIAGARMGMKTLILNINLDTVGWTPCNPAMGGPAKGIVVREI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D L G + +  D A +  R+LN  KG AVR  R Q D+  Y   M+R +  QENL +  G
Sbjct: 67  DVLGGEIAKSTDQASLNIRILNTSKGAAVRALRAQVDKIRYSQTMKRSMEMQENLFIQSG 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V    TEK  +  ++          +V++ +GTFL G I IG  + PAGR+G+ PS  L
Sbjct: 127 IVKAIETEKGSVKGVITNFGLRYSARSVIVASGTFLGGKIFIGPHEFPAGRLGEFPSTEL 186

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK-ITNRQIECG 241
             S     F+  R KTGTPAR+ G++I + + E+Q   E  + FS  ++  +      C 
Sbjct: 187 TGSLRSIGFEVRRFKTGTPARIAGRSIDFAEMERQGTSETPLCFSHFSEPYVLEDDHPCW 246

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           +TRTN ETH II  ++  S +Y     I S GPRYCPSIEDK+++F  ++ HQ+F+EPE 
Sbjct: 247 LTRTNKETHDIIKRDLHFSPLYGDLKLIDSRGPRYCPSIEDKVIKFSSKDSHQLFVEPES 306

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
             ++  Y NG+ST+LP E Q + IRTIPGL +  I+RP YAIEYDYINP +L+ TLE+K 
Sbjct: 307 AYSNEYYLNGLSTSLPYETQLEMIRTIPGLGRAEIVRPAYAIEYDYINPTQLYSTLESKV 366

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  L+ AGQ+NGT+GYEEAA QGL+AGIN++ K      +  SR+++YIGVMIDDL +KG
Sbjct: 367 VENLYFAGQVNGTSGYEEAAGQGLIAGINASAKLLGEKQLVLSRSEAYIGVMIDDLVTKG 426

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAEYR+ LR DNA  RLT  G + G +    ++R     +E       L+
Sbjct: 427 VDEPYRLLTSRAEYRLLLRHDNAHIRLTEYGYRYGLVPAWFKERVDSLTREIKTQLIRLQ 486

Query: 480 SLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            + +      +  +  K   K          L       +++    P+       VI ++
Sbjct: 487 KINVRPSEGLNELLISKGSSKIDLPVKFSSLLKRAGVGYRDISMFDPE-PILDDDVIGQV 545

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  R   E K ++  E+ LIP   DY ++  LS E KEKL   KP ++ QA 
Sbjct: 546 EIEVKYSGYIDRLKAEVKRLEEIEEDLIPSTMDYDAVSNLSTEAKEKLKKTKPASVGQAM 605

Query: 597 KIEGMTPAALNLLLIYIKKNTVK 619
           +I G+TP+ +  L  ++K    K
Sbjct: 606 RIPGLTPSDIMNLSFHLKHEGEK 628


>gi|171920380|ref|ZP_02931708.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701825|ref|ZP_02971495.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902814|gb|EDT49103.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701112|gb|EDU19394.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 614

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/614 (40%), Positives = 365/614 (59%), Gaps = 7/614 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG GHAG EAA   + L   TALIT     IG M CNP+IGG  KG + REID
Sbjct: 2   KKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G+ ADA  +Q ++LN  KGP V   R Q D+  Y+   +++I  Q+NLD+I  E
Sbjct: 62  ALGGIQGKAADATTMQMKILNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+    E NII  +++ D  +I  + V++TTGT+L+ + H G + +  G  G   +  L 
Sbjct: 122 VSDLLVENNIIKGVILSDQKIIYANYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLS 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--KITNRQIECG 241
           ++ +K  F   RLKTGTPAR+   +I +     +    + I FS      K  + Q+ C 
Sbjct: 182 DALVKLGFKLIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCH 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN +TH+II EN+  SA+Y G I   GPRYCPSIEDKIV+F E+  HQIF+EPE   
Sbjct: 242 IIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYE 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G ST++P ++Q + IR++PGLE   I++  YAIEYD I+P +L+P+LE+K + 
Sbjct: 302 LDSMYLGGFSTSMPIDVQEKMIRSLPGLESCKILKYAYAIEYDAIDPTQLYPSLESKLVK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF AGQINGT+GYEEAAAQGL+A IN  +K    + +   R  +YIGVMIDD+ +KGV+
Sbjct: 362 NLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVV 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSRAE+R++LR DNAD+RL  IG ++G +      ++   +++   + + LK+ 
Sbjct: 422 EPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKSEVYDQYLNNLKQIKEILNWLKTT 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +   +     + F          ++L  P+  + +L   CP  +     +I ++QI+  
Sbjct: 482 TVGQID----DLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCP-IKIEDEQIINKVQIQVK 536

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           +  Y   Q    K++K      +    DY  +P +S E  +KL+ +KP +L QAS+I G+
Sbjct: 537 FEGYIKNQEENLKQLKRLNNIKLHTIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGV 596

Query: 602 TPAALNLLLIYIKK 615
               + ++  Y+++
Sbjct: 597 NLTDIAMIKYYLER 610


>gi|294085213|ref|YP_003551973.1| glucose-inhibited division protein A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664788|gb|ADE39889.1| glucose-inhibited division protein A [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 648

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/601 (48%), Positives = 395/601 (65%), Gaps = 14/601 (2%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            AL+T +   IG MSCNPAIGGLGKGHLVREIDALDGLMGR  D AGIQFR+LN  +GPA
Sbjct: 30  VALVTMRADRIGEMSCNPAIGGLGKGHLVREIDALDGLMGRAIDRAGIQFRMLNKSRGPA 89

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN---------IISSIVMQD 141
           V GPR QADR LYR A+Q  +   +++ +I+  V     +            ++ I+ +D
Sbjct: 90  VHGPRAQADRALYRAAIQEFLNEDDHITIIEAAVGDLLVDDMAAGLTGAPRQVTGIICED 149

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
              ++ ++VVLTTGTFL G+IH+G  +  AGR+G++PSN L           GRLKTGTP
Sbjct: 150 GRELKAASVVLTTGTFLGGLIHLGNERTEAGRIGEAPSNMLATRLADLALPLGRLKTGTP 209

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA 261
            RLDG+TI W   E Q AD   IPFS MTDKIT  QIECGITRT  +THRII E+I  SA
Sbjct: 210 PRLDGRTIDWSVLEMQPADNPPIPFSTMTDKITVPQIECGITRTTAKTHRIIAESIHLSA 269

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           +++G+I   GPRYCPSIEDK+ RF +++ HQ+FLEPEGL+   +YPNGIST+LP ++Q  
Sbjct: 270 VFNGNISGQGPRYCPSIEDKVNRFADKDSHQLFLEPEGLDDHTIYPNGISTSLPRDVQEA 329

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            ++TIPGLE+  I++ GYAIEY++++P+ L  TLE + + GL+LAGQINGTTGYEEAAAQ
Sbjct: 330 LVKTIPGLEQTVILQHGYAIEYNFVDPRALRQTLELRVLPGLYLAGQINGTTGYEEAAAQ 389

Query: 382 GLVAGINSARKSNKLD-----CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           GL+AG+N+A  +   D          R D+YIGVMIDDL SKG  EPYRMFTSRAEYR+ 
Sbjct: 390 GLMAGVNAALAAASGDNRQKTSFTLDRADAYIGVMIDDLISKGAPEPYRMFTSRAEYRLL 449

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK 496
           LR DNAD RLT  GM +GC+G  RQ  + +  ++    ++ L SL  + K+L    +   
Sbjct: 450 LRADNADQRLTEKGMAIGCVGSARQNVWHRKHKQLAKAKATLLSLTASGKDLEIAGLPKP 509

Query: 497 QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI 556
           +DG  RTA + LS    +I  L  + P+    +SL   +L+ +  YA Y  RQ  +   +
Sbjct: 510 RDGGKRTAADMLSLEGITIDRLTPLWPELANIASLYHAQLEADYRYAGYVARQKADIDAL 569

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           + +E   IP D D+S +  LS E ++ L   +P  + QA+++ G+TPA++  +L ++++ 
Sbjct: 570 RRDEATAIPDDLDFSVIGGLSAEAQDVLKRRQPETIGQANRLAGLTPASVVAVLRHLRRR 629

Query: 617 T 617
            
Sbjct: 630 E 630


>gi|19882217|ref|NP_598400.1| protein MTO1 homolog, mitochondrial isoform b [Homo sapiens]
 gi|20981712|sp|Q9Y2Z2|MTO1_HUMAN RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|19335739|gb|AAL85490.1| MTO1 protein isoform III [Homo sapiens]
 gi|19335741|gb|AAL85491.1| MTO1 protein isoform IV [Homo sapiens]
 gi|55961490|emb|CAI14881.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569148|gb|EAW48763.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_d [Homo sapiens]
          Length = 717

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/664 (42%), Positives = 399/664 (60%), Gaps = 48/664 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR----------------- 336
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+                 
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAI 392

Query: 337 --------PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
                   PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN
Sbjct: 393 SAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGIN 452

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT 
Sbjct: 453 ASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTL 512

Query: 449 IGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---A 504
            G K  GC+ ++R +R            S+LKS+   S                     A
Sbjct: 513 RGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRA 572

Query: 505 YEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K    +
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRR 692

Query: 620 LNEI 623
            + +
Sbjct: 693 QSAM 696


>gi|169612247|ref|XP_001799541.1| hypothetical protein SNOG_09242 [Phaeosphaeria nodorum SN15]
 gi|160702466|gb|EAT83434.2| hypothetical protein SNOG_09242 [Phaeosphaeria nodorum SN15]
          Length = 691

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/623 (46%), Positives = 396/623 (63%), Gaps = 13/623 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ YDVIVIGGGHAGCEA+A AA+ GA TALIT K   +G  SCNP+ GG+GKG ++REI
Sbjct: 36  SQPYDVIVIGGGHAGCEASAAAARSGARTALITPKHDNLGVCSCNPSFGGIGKGTMLREI 95

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG++GR+ D AG QFRVLN KKGPAV GPR Q DR LY+  M+ E+L+ E L V++G
Sbjct: 96  DALDGVVGRIVDKAGTQFRVLNRKKGPAVWGPRAQIDRSLYKKYMKEEMLNYEGLSVLEG 155

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            VA    ++            I+ + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 156 SVADIIVDQTQEEGVKGRYGRITGVRLESGEIIPTGNVVITTGTFLGGEIHIGLDAYPSG 215

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S     F  GRLKTGTP RLDGK+I +   + Q  D+  +PFS++ ++
Sbjct: 216 RMGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDGKSINFKTLDAQEGDQPPMPFSYLNER 275

Query: 233 IT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +   +Q+    TRTN  TH +I  N+  S      +K  GPRYCPS+E K++RF ++  H
Sbjct: 276 VQVEQQLLNHETRTNEATHDVIRNNLDKSIHIRETVK--GPRYCPSLESKVIRFTDKTSH 333

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            I+LEPEG + DV+YPNGIS  +P ++Q + ++T+ GLE VN+++PGY +EYDY++P+ L
Sbjct: 334 IIWLEPEGFDNDVIYPNGISCTVPADVQIEMLKTVRGLENVNMLQPGYGVEYDYVDPRHL 393

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLETK ISGLFLAGQINGTTGYEEAA QG++AGIN+  +S     +  +R D YIG+M
Sbjct: 394 RSTLETKNISGLFLAGQINGTTGYEEAAGQGVIAGINAGLRSLNKPAMILTRADGYIGIM 453

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +   R   F++   + 
Sbjct: 454 IDDLITKGVSEPYRMFTSRSEYRMSARADNADTRLTAKGHTAGVVRSPRWTAFSRDAADM 513

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL 531
             L SLL+   L   + +    + + D   R+AY+ L  P  +  +L SI P    FS  
Sbjct: 514 AELTSLLQEKTLGWSDWNKHGFAVRNDSTKRSAYDLLRLPSTTPSSLTSILPQIANFSPR 573

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           + +R+ IES+YA Y   Q +       +E   +P D  Y ++  LS E K  L + +P +
Sbjct: 574 IQDRVHIESTYAPYVAYQSVSQARWLKDEHLRLPDDLSYEAIFGLSYEEKRALEVARPES 633

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           + QA ++EG+TP     LL ++K
Sbjct: 634 VGQARRVEGVTPTGALRLLQFVK 656


>gi|145250253|ref|XP_001396640.1| translation optimization protein 1 [Aspergillus niger CBS 513.88]
 gi|134082157|emb|CAK42270.1| unnamed protein product [Aspergillus niger]
          Length = 698

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/637 (43%), Positives = 391/637 (61%), Gaps = 23/637 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++RE+
Sbjct: 38  TRAYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREV 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+LY+  MQ E+   E L +++G
Sbjct: 98  DAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRDLYKKYMQEELQGTEGLSIVEG 157

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K+           I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 158 KVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVVITTGTFLGGEIHIGLEAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S     F  GRLKTGTP RLD KTI +   E Q  D    PFS++  +
Sbjct: 218 RMGEAATFGLSKSLRDAGFTLGRLKTGTPPRLDRKTINFAPLEVQEGDHPPSPFSYLNGR 277

Query: 233 ITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN + H I+  N+  +      +   GPRYCPS+E KI+RF ++ 
Sbjct: 278 VQVDDEAQLTCWMTYTNDDVHDIVRANLDKTIHIRETV--RGPRYCPSLESKIIRFTDKK 335

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEG    DV+YPNGIS  +P + Q+  +R + GLE V +++PGY +EYDYI+P
Sbjct: 336 RHLIWLEPEGFAPNDVIYPNGISMTIPADAQYAMLRKVHGLENVTMLQPGYGVEYDYIDP 395

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +   + +   R+D++I
Sbjct: 396 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGREPLTLRRSDAFI 455

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDLT+KGV EPYRMFT+R+EYRI+ R DNAD RLT +  + G + ++R + F +  
Sbjct: 456 GIMIDDLTTKGVSEPYRMFTTRSEYRITTRSDNADLRLTRMAREAGIVSDKRWRHFTETE 515

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP----- 523
            + N L++LL++  ++S   +      + D   R+A + L   +  I +L          
Sbjct: 516 AQINELQTLLENTKMSSYAWARKGFKARIDPSQRSALDLLCLRESDIDSLIPHIESPTGT 575

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
              A  F   +  R+ IE  YA +  RQ   AK+   +E   IP D DY+++  +S E K
Sbjct: 576 VYSASSFPPEIRNRVSIEGRYAPFVIRQENAAKKSLRDENLSIPADLDYATVQGISIEEK 635

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           + L  ++P ++  A +IEG+TP+ +  +L+++ + + 
Sbjct: 636 QALERVRPVSIGMARRIEGVTPSGVLRVLMHVHRTSR 672


>gi|71894526|ref|YP_278634.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma synoviae 53]
 gi|123644047|sp|Q4A5P8|MNMG_MYCS5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|71851314|gb|AAZ43923.1| glucose inhibited division protein A [Mycoplasma synoviae 53]
          Length = 609

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/614 (42%), Positives = 368/614 (59%), Gaps = 13/614 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N ++D IVIG GHAG EAA   AK     ALIT   S I  M CNP+IGG  KG + RE
Sbjct: 1   MNNNFDAIVIGAGHAGVEAAFALAKSNNKVALITFDLSKITMMPCNPSIGGPAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  +D A IQ ++LN  KGPAVR  R Q D+E Y   ++ ++    N+ +I+
Sbjct: 61  IDALGGIQGYYSDLAMIQIKMLNDSKGPAVRAIRAQIDKEKYSKLIREDLQKNSNITLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     +K +  S+V+     I     VLTTGT++   I  G     +G  G   +N 
Sbjct: 121 AGVYEIKADKKVFKSVVLSTGEEIFAKVCVLTTGTYMNSQILRGSSVTVSGPDGQKTTNK 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  S  K  F+  R KTGTPAR+   +I + K EK+  D   + FS  ++K  N+Q+ C 
Sbjct: 181 ISESLKKLGFELQRFKTGTPARIYKSSIDFSKVEKEILDTNDLNFSNRSNKKLNQQVSCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T TN +TH II+ N+  S++YSG IK  GPRYCPSIEDK+VRF +RN HQ+F EPE L+
Sbjct: 241 LTYTNEKTHEIILNNLDKSSMYSGLIKGTGPRYCPSIEDKVVRFSDRNRHQVFFEPETLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             ++Y NG+ST++PE+IQ QF++TIPGLE + I + GYAIEYD +N  +L  +LETK I 
Sbjct: 301 ETIIYLNGLSTSMPEDIQMQFLKTIPGLENLKIQKYGYAIEYDALNSLDLKHSLETKVIK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQINGT+GYEEAAAQGL+AGIN+A K      +   R+D+YIGV+IDDL  KG  
Sbjct: 361 NFFAAGQINGTSGYEEAAAQGLIAGINAALKLKNKKPLVLKRSDAYIGVLIDDLVIKGTK 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DN+D RL+  G KLG I +    +  K  +  N   + L   
Sbjct: 421 EPYRMLTSRAEYRLLLRHDNSDYRLSKYGYKLGLISKDEYSQIQKKYKNINSKINYLSKK 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAY-EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
            L++ +    +I+ K + K  T+Y + L  P+ + +++          +      L I+ 
Sbjct: 481 YLSTNS----NIAKKYNIKEATSYLKLLLRPEINPKDILK--------NYKYQNELLIKI 528

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q  +A  +K  EK  IP + +Y  +  L++E K+KL I+KP  + QA +I G
Sbjct: 529 KLEGYIKKQKQDASRMKNLEKIKIPNNINYDKVLNLASEAKDKLKIIKPETIAQAYRISG 588

Query: 601 MTPAALNLLLIYIK 614
           + P+ + +L+ ++K
Sbjct: 589 INPSDIQMLIFHLK 602


>gi|327295821|ref|XP_003232605.1| mitochondrial translation optimization protein [Trichophyton rubrum
           CBS 118892]
 gi|326464916|gb|EGD90369.1| mitochondrial translation optimization protein [Trichophyton rubrum
           CBS 118892]
          Length = 693

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/634 (45%), Positives = 392/634 (61%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDVIV+GGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 34  TRPYDVIVVGGGHAGSEACAAAARSGARTALVTPSRSDIGVCSCNPSFGGIGKGTMIREI 93

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L +++G
Sbjct: 94  DALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELTNTPGLSIVEG 153

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    V++TTGTFL G IHIG    P+G
Sbjct: 154 KVADIVISKENMTSLNGSQGEIIGVRLESGEVIPTGKVIITTGTFLGGEIHIGLDVFPSG 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D 
Sbjct: 214 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFSYLNDS 273

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 274 VQIGDKGQLSCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIRFKDKP 331

Query: 290 GHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EYDY++P
Sbjct: 332 RHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEYDYVDP 391

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +I
Sbjct: 392 RSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSRADGFI 451

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G +  +R ++F +  
Sbjct: 452 GIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTARGRAAGVVSAKRWRQFNQTK 511

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-- 526
           ++ ++L++LL++    S   +      + D   R+A+E LS+   S+ ++      A   
Sbjct: 512 EQMSYLQALLENTKHPSTLWARKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIESAPGT 571

Query: 527 -----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 FSS +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E +
Sbjct: 572 IHSLSSFSSEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGLSTEER 631

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 632 QVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 665


>gi|301762402|ref|XP_002916620.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 692

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/622 (44%), Positives = 393/622 (63%), Gaps = 28/622 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ +RVLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYRVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V              K  +S +
Sbjct: 117 RKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLAVQEGAVEDLILTDPEPEHAGKCRVSGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 177 VLADGSTVHAESVVLTTGTFLRGVIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  +++ +    KQ  D   IPFSF+ + +      Q+ C +T TN     I++
Sbjct: 237 TGTPPRIAKESVNFSILNKQTPDNPSIPFSFINETVWIKPEDQLPCYLTHTNPRVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 297 ENLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  II+PGY ++YDY++P+++ P+LET  +  LFLAGQINGTTG
Sbjct: 354 PAELQEKMITCIKGLEKAKIIQPGYGVQYDYLDPRQITPSLETHLVQRLFLAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +  +      SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 414 YEEAAAQGVIAGINASLRVKRKPPFVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS--- 490
           +SLRPDNAD+RLT  G  ++GC+ +RR +R +          S+LKS+  +S        
Sbjct: 474 LSLRPDNADSRLTFRGYKEVGCVSQRRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIP 533

Query: 491 -TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKF--SSLVIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  ++ L    P+  +K+     + ERL+IE++Y +  
Sbjct: 534 AASISIGKSLPLR-ALDVLKYEEVDMKLLAKAVPEPLKKYIKCRELAERLKIEATYESVL 592

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E KE++ +E   +PKD DY +L   +LS E++EKL   +P  +  AS+I G+TPA
Sbjct: 593 LHQQQEIKEVQQDEALQLPKDLDYLTLRDVSLSYEVREKLHFSRPETIGAASRIPGVTPA 652

Query: 605 ALNLLLIYIK---KNTVKLNEI 623
           A+  LL ++K   +  + +NE+
Sbjct: 653 AIINLLRFVKTTQQRQMAMNEL 674


>gi|260576110|ref|ZP_05844103.1| glucose inhibited division protein A [Rhodobacter sp. SW2]
 gi|259021590|gb|EEW24893.1| glucose inhibited division protein A [Rhodobacter sp. SW2]
          Length = 621

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/592 (53%), Positives = 416/592 (70%), Gaps = 2/592 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K + IG MSCNPAIGGLGKGHLVREIDA+DGLMGRVAD AGIQ+R+LN +KGPAV+
Sbjct: 31  LVTLKAAGIGVMSCNPAIGGLGKGHLVREIDAMDGLMGRVADHAGIQYRLLNRRKGPAVQ 90

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
           GPR QADR+LYRLAMQ E+     L +I+GEV         +S +V+   S +   +VVL
Sbjct: 91  GPRAQADRKLYRLAMQHELRVLRGLTIIEGEVVDLKERAGAVSGVVLACGSELTAGSVVL 150

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           T GTFL G+IHIG  +   GR+GD+PS  L           GRLKTGTP RLDG TI W 
Sbjct: 151 TAGTFLNGLIHIGDQRQSGGRIGDAPSLRLAERLSGLGLKKGRLKTGTPPRLDGNTIDWA 210

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E Q  D+  + FSF+  K   RQ+ CGIT TN +TH I+ +N+  SA+Y G I+  GP
Sbjct: 211 VLESQAGDDEPVVFSFLHRKPFVRQVACGITHTNEQTHDIVRKNLDRSAMYGGHIEGVGP 270

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK+VRF ++  HQ+FLEPEGL+   VYPNGIS++LP E+Q  ++R+I GLE+V
Sbjct: 271 RYCPSIEDKVVRFADKASHQVFLEPEGLDDTTVYPNGISSSLPAEVQMDYVRSIVGLERV 330

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            I++PGYAIEYDY +P+ L PTL  K ++GL+LAGQINGTTGYEEAAAQGL AG+N+A  
Sbjct: 331 QILQPGYAIEYDYFDPRSLMPTLRLKAMAGLYLAGQINGTTGYEEAAAQGLAAGLNAALA 390

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D   FSR+ SYIGVMIDDL + GV EPYRMFTSRAE+R++LR DNAD RLTP+GM 
Sbjct: 391 AFGRDPHLFSRSQSYIGVMIDDLLNHGVTEPYRMFTSRAEFRLTLRADNADQRLTPVGMA 450

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LGC+G+ RQ+ FA  +QE     + L+SL+L  K + S  +   QDG  R+A E L++PD
Sbjct: 451 LGCVGQHRQRVFAAKMQELAKGTAALQSLLLPPKAIESLGVKISQDGNRRSALEVLAFPD 510

Query: 513 FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
            S++ + S+CP+         +++  ++ YA Y+ RQ + A+ ++ +E   IP DFDY +
Sbjct: 511 SSVEGIASVCPEFAAIEQENRQQIWRDALYAQYSQRQSVAAEALRRDESVTIPADFDYGA 570

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           L  LS+EL  KL  ++P +LLQAS++EGMTPAAL L+L  ++++  K N + 
Sbjct: 571 LSGLSSELTSKLKAVQPVSLLQASRMEGMTPAALTLILARLRRS--KRNRVA 620


>gi|170109500|ref|XP_001885957.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639228|gb|EDR03501.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 651

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/594 (46%), Positives = 375/594 (63%), Gaps = 12/594 (2%)

Query: 32  ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            L+T K  TIG +SCNP+IGG+GKG LVRE+DAL G+MG V D AGIQF++LN  KG AV
Sbjct: 50  VLLTQKLETIGELSCNPSIGGVGKGTLVREVDALGGIMGGVVDKAGIQFQILNRTKGAAV 109

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--------IISSIVMQDNS 143
            GPR Q DR+LY+  +Q  + +  NLD+  G V     +++         IS + ++   
Sbjct: 110 WGPRAQIDRKLYKKNIQNVLHNYPNLDIRAGSVFDIVIDQSDNTLGRWGKISGVKLETGE 169

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           +I CS VV+ TGTFL G IHIG  + PAGR+G++PS  L  S     F  GRL+TGTPAR
Sbjct: 170 IIPCSQVVICTGTFLSGEIHIGLNRFPAGRLGEAPSIGLSASLNAAGFKLGRLQTGTPAR 229

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSA 261
           LD  TI +   E+Q  D    PFSFM   + N   Q+ C  T T  ETH+II +NI  S 
Sbjct: 230 LDISTIDFGGLERQDGDVVPSPFSFMNRTVANADNQVYCYKTATTPETHQIIKDNIHLSV 289

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
                 K  GPRYCPS+E K++RFG ++ H ++LEPEG ++D++YPNGIS ++PEE+Q  
Sbjct: 290 HIQETRK--GPRYCPSLEAKVLRFGHKDHHTVWLEPEGYDSDLIYPNGISCSIPEELQET 347

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            IRTIPGLE   +++P Y +EYDYI+P+EL PTLET +I GLFLAGQINGTTGYEEAAAQ
Sbjct: 348 MIRTIPGLENAKMVKPAYGVEYDYIDPRELGPTLETNRIKGLFLAGQINGTTGYEEAAAQ 407

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G+VAGIN+     K   +  +R D + GVMIDDL  KG  EPYRMFTSR+EYR+++R DN
Sbjct: 408 GIVAGINAGLAVLKRPPLVLTRADGFTGVMIDDLIVKGAEEPYRMFTSRSEYRMTIRSDN 467

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT 501
           AD RLT  G + G I + R   F +           LKSLV + +  ++  +  ++DG  
Sbjct: 468 ADMRLTEKGREAGVISDERWSAFNETRTTMADATKRLKSLVFSPQGWAAHGVRVQRDGIL 527

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
           R+A++ L YP  + + L    P+ R     ++ R+ +E  Y A+  RQ  + K    +E 
Sbjct: 528 RSAFQMLRYPGVTTEFLKGAVPELRDIHPSILSRIDVEGQYDAHLTRQEADLKTFMEDES 587

Query: 562 RLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L+    +YS++P LS+E+ E+L  +KP  +  A ++EGMTP ++  LL + K+
Sbjct: 588 LLLDPRMEYSTVPGLSSEVVERLYRVKPTTIGAAKRMEGMTPTSVVYLLKHAKR 641


>gi|149247916|ref|XP_001528345.1| hypothetical protein LELG_00865 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448299|gb|EDK42687.1| hypothetical protein LELG_00865 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 691

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/638 (42%), Positives = 396/638 (62%), Gaps = 29/638 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++ VIVIGGGHAGCEAA  +A+ GA T LIT   S IG+ SCNP++GG+GKG L+RE+D
Sbjct: 41  ENHPVIVIGGGHAGCEAATGSARSGAKTTLITPDISKIGTASCNPSMGGVGKGTLLREVD 100

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+ +NL +++ +
Sbjct: 101 ALDGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLTEMQKEILNYQNLSIVESQ 160

Query: 124 VAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V     E +            +  +++ +  +++C  +V+TTGTFL G IHIG    PAG
Sbjct: 161 VKDIIIEPDSTKDQSGRDLGTVRGVILDNGQILKCDKIVVTTGTFLGGEIHIGLTAFPAG 220

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  +  L ++F    F  GRLKTGTP RL  KTI +    +Q +D    P SFM D 
Sbjct: 221 RMGEKATFGLSDTFRGAGFKLGRLKTGTPPRLSSKTIDYTNLLEQPSDVPPQPMSFMNDN 280

Query: 233 I--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   N+ ++C  T+T  E H ++  N+  S      +K  GPRYCPSIE K+++F ++  
Sbjct: 281 VALENQLVKCHQTQTTPEFHSLVANNLDKSIHIRETVK--GPRYCPSIESKVIKFPQKQS 338

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEG +TD+VYPNGIS  +PEEIQ Q ++ +PG E V +++PGY +EYDYI+P+E
Sbjct: 339 HIVWLEPEGFDTDLVYPNGISCTMPEEIQEQLVKMMPGCENVKMVQPGYGVEYDYIDPRE 398

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+   S K+  +   R+D Y+GV
Sbjct: 399 LTNTLETKLVKGLYLAGQINGTTGYEEAAAQGCIAGINAGLSSQKMKEMRLQRSDGYVGV 458

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +IDDL +KG+ EPYRMFTSR+E+R+SLR DNAD RLT +G KLG +GE R + FA  ++ 
Sbjct: 459 LIDDLITKGIEEPYRMFTSRSEFRVSLRADNADKRLTELGYKLGVVGETRYRHFANEMEI 518

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPDA-- 525
              ++  L+ L LT           + D +  +    ++ LSY   SI +L         
Sbjct: 519 MQNIKDHLQGLRLTGATWLPALNGHRTDVRPESRVDGWKLLSYSGVSILDLLPHMSKFTG 578

Query: 526 -------RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL-- 576
                  +  S+ ++ R+ +ES Y  +  ++       K +E  L+P +F+Y++   L  
Sbjct: 579 GEVPSYYKNLSNRLVTRIDVESDYEPFISKEQTHLNAYKADENLLLPTNFNYTNTGNLKI 638

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           S+E    L+ ++P  + QA +I+G+ P  +  LL  ++
Sbjct: 639 SHEACTILNTIQPRTIGQARRIQGINPTTIFELLKLVR 676


>gi|257463656|ref|ZP_05628047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium sp. D12]
 gi|317061206|ref|ZP_07925691.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. D12]
 gi|313686882|gb|EFS23717.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 2
           [Fusobacterium sp. D12]
          Length = 630

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/600 (42%), Positives = 354/600 (59%), Gaps = 17/600 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TA+ T     IG MSCNP++GG  K HLVREIDAL G MGR  D   IQ RVLN KKGP
Sbjct: 29  KTAIFTISLDNIGVMSCNPSLGGPAKSHLVREIDALGGEMGRNIDKTYIQIRVLNTKKGP 88

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
           AVR  R QAD+  Y   M+R I S ENL  IQG V+    E      I +++    R   
Sbjct: 89  AVRSLRAQADKIAYAKEMKRTIESCENLSAIQGMVSELLVENGKAVGIKIREGVEYRAKR 148

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           ++L TGTFLRG+IHIG+     GRMG+  S  L  S +K   D  R KTGTP+R+D ++I
Sbjct: 149 IILATGTFLRGLIHIGESHFSGGRMGELSSEELPLSLLKHGLDLQRFKTGTPSRIDARSI 208

Query: 210 IWDKTEKQFAD-ERLIPFSFMT---DKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
            +   E+Q  +  R++ FS  T   D    +QI C I  TN   H  I +N + S +++G
Sbjct: 209 DFSVLEEQPGEKSRILKFSNRTKEEDLKDRKQISCYIAHTNEAVHEEIKKNRERSPLFNG 268

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            I+  GPRYCPSIEDK+ R+ ++  H +FLE EG  T+ +Y  G+S++LP ++Q   I  
Sbjct: 269 TIQGLGPRYCPSIEDKVYRYADKQQHHLFLEREGYETNEIYLGGLSSSLPVDVQENMIHQ 328

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           I G E   I+R GYAIEYDYI P E+  +LE++ I  LFLAGQINGT+GYEEA AQGL+A
Sbjct: 329 IRGFEHAQIMRYGYAIEYDYIPPSEIQYSLESRSIPNLFLAGQINGTSGYEEAGAQGLIA 388

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+ R  +  + I   R DSYIG +IDDL  KG  EPYRMFT+R+EYR+ LR DNAD R
Sbjct: 389 GINAVRSIDGKEAIVLDRADSYIGTLIDDLVLKGTNEPYRMFTARSEYRLLLREDNADLR 448

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS------STSISFKQDG 499
           L+ IG ++G + E   ++  +  +    +   L+   +   N               +DG
Sbjct: 449 LSKIGYEVGLVSEEEYQKVEQKRENVKKIIEALQQNFVGPGNPRVNERLHEKGEQILKDG 508

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDAR-----KFSSLVIERLQIESSYAAYTGRQMIEAK 554
              + +E L  P+ + +++  +  + +      +      ++++++ Y+ Y  R +   +
Sbjct: 509 --ASLFEVLRRPEINYEDIEYMTEETKVFNFGAYDEDTKYQVEVQTKYSGYIERSLKMIE 566

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           + K  E++ IP+D DY SL  +  E KEKL  +KP N+ QAS+I G++PA + +LLIY+K
Sbjct: 567 KHKSMEQKRIPEDMDYDSLQNIPKEAKEKLKKIKPSNIGQASRISGVSPADIQVLLIYLK 626


>gi|242823849|ref|XP_002488142.1| mitochondrial translation optimization protein (Mto1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218713063|gb|EED12488.1| mitochondrial translation optimization protein (Mto1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1096

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/614 (42%), Positives = 370/614 (60%), Gaps = 23/614 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T   S IG  SCNP+ GG+GKG ++REIDALDG+ GR+ D AG+ FR+LN  KGPAV 
Sbjct: 66  LVTPSLSNIGVCSCNPSFGGIGKGTMMREIDALDGVAGRIIDKAGVMFRILNRSKGPAVW 125

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDN 142
           GPR Q DR+LY+  M+ E++S +NL +I+ +V      ++           I  I +   
Sbjct: 126 GPRAQIDRDLYQRYMREELVSTKNLSIIEAKVEDIVVSRDDNEQNSHSAGRIVGIRLDSG 185

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
            +I  + VV+TTGTFL G IHIG    P+GRMG++ ++ L  S  +  F  GRLKTGTP 
Sbjct: 186 QVIPTNRVVITTGTFLGGEIHIGMEAYPSGRMGEAATHGLSKSLRQAGFQLGRLKTGTPP 245

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKH 259
           RLD K+I +   E Q  D    PFSFM   +      Q+ C +T TN  TH++I +N+  
Sbjct: 246 RLDKKSIDFSSLEVQRGDSPPNPFSFMNKTVQVGDEGQLTCWMTHTNEATHQVIRDNLDK 305

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV-YPNGISTALPEEI 318
           S      +K  GPRYCPS+E KI+RF  +  HQI+LEPEG   + V YPNGIS  +P E 
Sbjct: 306 SIHIRETVK--GPRYCPSLEAKIIRFKNKTQHQIWLEPEGFAPNEVIYPNGISMTVPVEA 363

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GL+ V++++P Y +EYDYI+P+ L PTLETK I GL+LAGQINGTTGYEEA
Sbjct: 364 QEAMLRTIRGLKNVHMLQPAYGVEYDYIDPRNLKPTLETKLIGGLYLAGQINGTTGYEEA 423

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG++AG N+   +     +  +R D YIG+M+DDL ++GV EPYRMFTSR+E+RIS R
Sbjct: 424 AGQGILAGTNAGLAAQGKSPMVLTRADGYIGIMVDDLITRGVSEPYRMFTSRSEFRISSR 483

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT +G +   + + R   F     +   L  LL++   TS   S      + D
Sbjct: 484 SDNADLRLTAMGREASVVSDERWNHFNDTKSQIEELSRLLENTRYTSNQWSRMGFQTRVD 543

Query: 499 GKTRTAYEFLSYPDFSIQNLFSICPD-------ARKFSSLVIERLQIESSYAAYTGRQMI 551
              R+  + L     +I +L             A  F S + +R+ IE+ YA Y  RQ +
Sbjct: 544 TSYRSGLDMLCVEGINIDSLIPHITSPSGTTYTAASFDSEIKKRVTIEAQYAPYVKRQSL 603

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
            A++ + EE+ L+P + DYS++  LS E ++ L  ++P N+    +IEG+TP+    +++
Sbjct: 604 MAEKFRREERMLLPSNMDYSAVHGLSTEERQALERVRPENIGMLRRIEGITPSGAVRIMM 663

Query: 612 YIKKNTVKLNEIVL 625
           Y++K  + + + V+
Sbjct: 664 YLRKGRLVIEDDVV 677


>gi|183398093|gb|ACC62507.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Rhinolophus ferrumequinum]
          Length = 692

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 385/622 (61%), Gaps = 28/622 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V            T K   S +
Sbjct: 117 RKGPAVWGLRAQIDRKLYKQNMQKEILTTPLLTVQEGAVEDLILTEPEPEHTGKCRASGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +V+LT GTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 177 VLADGSKVYADSVILTAGTFLRGMIVIGLEMHPAGRLGDQPSVGLAQTLEKLGFVVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  ++I +    +Q  D   IPFSF+ + +      Q+ C +T TN     I++
Sbjct: 237 TGTPPRIAKESINFSILNQQTPDNPSIPFSFLNETVWIKPEDQLPCYLTHTNPRVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 297 ENLHLNSHIKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  +I PGY ++YDY +P+++ P+LET  +  LF AGQINGTTG
Sbjct: 354 PAELQEKMITCIRGLEKAKMIHPGYGVQYDYFDPRQIAPSLETHLVQRLFFAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +         SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 414 YEEAAAQGVIAGINASLRVRHKPPFVISRTEGYIGVLIDDLTTMGTNEPYRMFTSRAEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNAD+RLT  G  + GC+ ++R +R +          S+LKS+  +S        
Sbjct: 474 LSLRPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIP 533

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  ++ L    P+   K++    + ERL+IE++Y +  
Sbjct: 534 EASISMGKSLPLR-ALDVLKYEEVDMELLAKAVPEPLEKYTKCRELAERLKIEAAYESVL 592

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E K ++ +E   +PKD DY +L   +LS E++EKL   +P  +  AS+I G+TPA
Sbjct: 593 FHQQQEIKSVQRDEALQLPKDLDYLTLKDVSLSCEVREKLHFCRPQTIGAASRIPGVTPA 652

Query: 605 ALNLLLIYIK---KNTVKLNEI 623
           A+  LL ++K   +    LNE+
Sbjct: 653 AIINLLRFVKTTQQRQAALNEL 674


>gi|41058550|gb|AAR99255.1| glucose-inhibited division protein A [Candidatus Blochmannia vafer]
          Length = 595

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/579 (43%), Positives = 353/579 (60%), Gaps = 7/579 (1%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +G MSCNP+IGG+GKGHLV+EIDA+ G+M    D +GIQFR+LN  KG AV+  R QAD+
Sbjct: 1   LGQMSCNPSIGGIGKGHLVKEIDAMGGIMANAIDRSGIQFRILNSSKGAAVKSTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
            LY+  +++ +  Q  L ++Q  V       N +  +++ +  M I   +V+LTTGTFL 
Sbjct: 61  ILYKQIIRQSLEDQSYLYILQASVEDVIIRHNKVMGVIIPNIEMKIFARSVILTTGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G I+IG      GR GD  S+SL      +      RLKTGT  R+  K + ++   +Q 
Sbjct: 121 GKIYIGMNNFEGGRAGDLESSSLLSRRLQELSLKVNRLKTGTSPRIYAKGVNFECMVEQH 180

Query: 219 ADERLIPFSFM-TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D  +  FSF+ + K   +QI C IT TN +TH II  N+ HS +Y+G I    PRYCPS
Sbjct: 181 SDCPIPVFSFIGSSKQHPKQIPCYITHTNSKTHDIIRSNLHHSPVYAGLINGIPPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK++RF +++ HQIFLEPEGL T  +Y NG++T+LP  +Q Q I++I GLE   I+RP
Sbjct: 241 IEDKVIRFPDKDTHQIFLEPEGLTTSEIYLNGVATSLPFNVQIQIIQSIKGLENARILRP 300

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYD+ NP +L  TLE+K ISGLFL+GQINGTTGYEEAAAQGL++GIN+AR +    
Sbjct: 301 GYAIEYDFFNPIDLKLTLESKFISGLFLSGQINGTTGYEEAAAQGLLSGINAARYAQNKT 360

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  SY+GV++DDL + G  EPYRMFTSRAEYR+SLR DNAD RLT I  +LG I 
Sbjct: 361 EWYPKRDQSYLGVLVDDLCTHGTTEPYRMFTSRAEYRLSLREDNADLRLTDIARQLGLIT 420

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFS 514
           + R + F    +         ++  +       +   SI            + L  P+ +
Sbjct: 421 DNRWRIFCVKQENIEREFQRFRNTYIFPNTTDIIKLNSILKVPLMNKVNGEDLLKRPEIN 480

Query: 515 IQNLFSICPDARKFSS-LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
              L  +       S   V E+++I+  YA Y  RQ  E       E  L+P D +Y+++
Sbjct: 481 YATLSQLSTFKPVISDNQVYEQIEIQIKYAGYLNRQKEEIDRNLRNEDTLLPFDINYNNI 540

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
             LS E+ EKL+  +P+++ QAS+I G+TP A+++LL++
Sbjct: 541 VGLSTEVVEKLNYCRPYSVGQASRISGITPVAISILLVW 579


>gi|312878756|ref|ZP_07738556.1| glucose inhibited division protein A [Aminomonas paucivorans DSM
           12260]
 gi|310782047|gb|EFQ22445.1| glucose inhibited division protein A [Aminomonas paucivorans DSM
           12260]
          Length = 627

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/607 (39%), Positives = 342/607 (56%), Gaps = 4/607 (0%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
           CEAA  +A++GA T L+         M+CNP++GG  KGHL+RE+DAL G   RV D   
Sbjct: 20  CEAALASARMGARTLLLNLHLENAALMACNPSMGGPAKGHLIREVDALGGFQARVTDRTT 79

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           +Q R LN  KGPAVR  R Q D   Y LA +  + + +NL+V QGEV     E+  I  +
Sbjct: 80  LQLRWLNTSKGPAVRTLRAQCDLVQYHLAFRMLLETTQNLEVHQGEVTDLWVEQGRIRGV 139

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
                  I    VVL  GT+L GV HIG  +  +G +G+ P++ L +S  +  F   RLK
Sbjct: 140 RTALGDPIEARRVVLAAGTYLAGVAHIGLHRFASGPLGELPASRLSDSLRREGFRVERLK 199

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENI 257
           TGT  RL   T+ W     Q +D     FS  + K T +   C   RTN  TH +I  ++
Sbjct: 200 TGTTPRLHADTVDWASLPLQESDPEPGAFSHFSPKRTYQGYPCAQIRTNRRTHDLIRAHL 259

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             S +++G I+  GPRYCPSIEDK+VRF ER+ H +FLEP       +Y   +ST+LP +
Sbjct: 260 DRSPLFTGVIQGVGPRYCPSIEDKVVRFPERDSHPVFLEPLSATNREIYVQNLSTSLPYD 319

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           +Q   +RT+PG E+  +++PGYAIEYDY+ P +L P LETK + GLF AGQ NGT+GYEE
Sbjct: 320 VQVALVRTLPGCERAKVLKPGYAIEYDYLPPTQLEPWLETKGVKGLFCAGQTNGTSGYEE 379

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AA+QGL+AGIN+ R     D +   R ++Y+GV++DDL +KG  EPYRM TSR E+R+ L
Sbjct: 380 AASQGLLAGINAVRTLRGEDPVVLGRHEAYLGVLVDDLVTKGTQEPYRMLTSRCEHRLLL 439

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF-- 495
           R DNAD RL P+G +LG + +R      +  +  + L   L++L +   +   + ++   
Sbjct: 440 RHDNADRRLAPLGRRLGLLEDRDWALLTERWRRQDDLEERLQALRVAPTDRVRSLLASWD 499

Query: 496 -KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
                +  TA E L  P  +   L  +C           E + +E+ Y  Y  RQ  +  
Sbjct: 500 TPAPEEPLTAKELLRRPQITWDRLAELC-GLEGEDREAGEYVAVETKYQGYVERQERQVA 558

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++  ++  +P+ FD+ S+P L  E   KL  ++P  L QA +I G+TPA L LL   ++
Sbjct: 559 RMRRFDEVPLPEGFDFRSVPGLLTESLTKLERVRPRTLGQAGRISGVTPADLQLLWATLE 618

Query: 615 KNTVKLN 621
               + +
Sbjct: 619 VRRRRDS 625


>gi|121703666|ref|XP_001270097.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus clavatus NRRL 1]
 gi|119398241|gb|EAW08671.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus clavatus NRRL 1]
          Length = 692

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/643 (43%), Positives = 390/643 (60%), Gaps = 23/643 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 36  RAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+DG+ GR+ D AGI FRVLN  KGPAV GPR Q DR+LY+  MQ E+++ E L +++G+
Sbjct: 96  AMDGVAGRIIDRAGIMFRVLNRSKGPAVWGPRAQIDRDLYKTYMQEELVATEGLSIVEGK 155

Query: 124 VAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA     K            I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 156 VADIVVSKEGVENVPGAQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSGR 215

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   +
Sbjct: 216 MGEAATFGLSKSLHEAGFQLGRLKTGTPPRLDMKTIDFSSLEVQKGDSPPQPFSYLNSTV 275

Query: 234 ---TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C +T TN  +H II  N++ S      +   GPRYCPS+E KI+RF ++  
Sbjct: 276 EVGDEGQLTCWMTHTNEASHEIIRANLEKSIHIRETV--RGPRYCPSLESKIIRFHDKKQ 333

Query: 291 HQIFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           HQI+LEPEG   + V YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P+
Sbjct: 334 HQIWLEPEGFAPNEVIYPNGISMTVPADAQYAMLRTVRGLENVRMLQPGYGVEYDYIDPR 393

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +IG
Sbjct: 394 NLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFIG 453

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G +  +R +RF     
Sbjct: 454 IMIDDLVTKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARNAGIVTNKRWQRFTDTEA 513

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD----- 524
           +   L+ LL+   L+S   S      + D   R+A + L      I  L           
Sbjct: 514 QIQELQGLLERTRLSSSVWSRKGFKTRTDSSVRSALDLLCLDAVDIDTLIPHIESPSGTA 573

Query: 525 --ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                F   +  R+ IE  YA Y  RQ   A++   +E  L+P D DY+ +  +S E ++
Sbjct: 574 YTPSSFDPAIRARVAIEGRYAPYVKRQEAMARKFLQDESLLLPADLDYAEVQGISTEERQ 633

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIVL 625
            L  ++P ++  A +IEG+TPA    LL++++++T    + ++
Sbjct: 634 ALERVRPVSVGMARRIEGVTPAGALRLLMHVRRSTGMRKDSLV 676


>gi|319776804|ref|YP_004136455.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Mycoplasma fermentans M64]
 gi|318037879|gb|ADV34078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mycoplasma fermentans M64]
          Length = 617

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/620 (40%), Positives = 346/620 (55%), Gaps = 12/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 9   HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 69  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 128

Query: 124 VAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   K     I + +  ++     V+TTGT++   I  G +   +G   +  +  L
Sbjct: 129 AEEILVNSKKEFKGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C +
Sbjct: 189 SASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACYL 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  + 
Sbjct: 249 TYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETADG 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I  
Sbjct: 309 SITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIKN 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  E
Sbjct: 369 FYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTKE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RL   G K+G I + + ++  K  +  +     L +  
Sbjct: 429 PYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKHQYQKVIKKYELIDQEIQRLHTTY 488

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+SK+  +            +  + L+ P     ++    P         +E L      
Sbjct: 489 LSSKDPVAIKYGI---TTGISLLQTLARPAVDPYDIIPDFP--------YLEELTTMVRL 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I G+ 
Sbjct: 538 HGYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRISGIN 597

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA + +L+ Y++    K N 
Sbjct: 598 PADIQMLMFYLETTRKKNNA 617


>gi|288928687|ref|ZP_06422533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329671|gb|EFC68256.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 623

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/619 (40%), Positives = 362/619 (58%), Gaps = 9/619 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAA  AAKLGA T L+T   + I  MSCNPA+GG+ KG +VRE+DAL
Sbjct: 5   YDVLVIGGGHAGCEAACAAAKLGAKTCLVTMDMNKIAQMSCNPAVGGIAKGQIVREVDAL 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG + D+  IQFR+LN  KGPAV  PR Q DR  +    +  + S E LD+ Q +  
Sbjct: 65  GGEMGIITDSTSIQFRMLNKGKGPAVWSPRAQCDRAKFITKWRETLDSTEGLDIWQDQAD 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E  +   +     +  R  ++V+T GTFL G++H+GK++IP GR  +        S
Sbjct: 125 ELLVEDGMAVGVRTLWGAEFRAKSIVVTAGTFLNGLMHVGKVQIPGGRCAEPAVYRFSES 184

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +      R+KTGTP R+D +T+ +++ E+Q  +     FS+M    T  Q+ C    T
Sbjct: 185 IARHGITVDRMKTGTPVRIDARTVHFEEMERQDGEIDFHQFSYMPTPRTLTQLPCWTFYT 244

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             E H+ +   I  S +++G I+S GPRYCPSIE K+V F ++  H +FLEPEG NT  +
Sbjct: 245 TQEAHQALQAGIADSPLFNGQIQSTGPRYCPSIETKLVTFPDKEQHPLFLEPEGENTAEM 304

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG S+++P ++Q   +R IP L      RPGYAIEYDY +P  L  +LE+K + GLFL
Sbjct: 305 YLNGFSSSMPLDVQLNALRKIPALRDAKAYRPGYAIEYDYFDPTLLHASLESKVVKGLFL 364

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+NGTTGYEEAA QGLVAGIN+A   ++ +     R +SYIGV+IDDLT+KGV EPYR
Sbjct: 365 AGQVNGTTGYEEAAGQGLVAGINAAIACSRGEPFVMKRDESYIGVLIDDLTTKGVDEPYR 424

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYRI LR D+AD RLT    ++G     R   + +  +    + S  ++  + +
Sbjct: 425 MFTSRAEYRILLRQDDADARLTERAYQIGLATRHRYDHWMEKKESIERIISFCETTSVKA 484

Query: 486 KNLSSTSI--SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-------RKFSSLVIERL 536
            ++++            +    + ++ P  ++  L    P+              ++E  
Sbjct: 485 NDINAALERWGTTPLNGSAKLADLIARPQLNLLVLADAVPELKAAIAQIPNRQEEIVEAA 544

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +I+  Y  Y  R+ I A +++  E   I   F+Y  L  +S E ++KL+ + P  L QAS
Sbjct: 545 EIKMKYKGYIEREKIVADKMRRLENIRIKGHFNYEELHEISTEGRQKLARINPETLAQAS 604

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G++P+ +N+LL+ + +
Sbjct: 605 RIPGVSPSDINVLLVLMNR 623


>gi|238809619|dbj|BAH69409.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 620

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/620 (40%), Positives = 346/620 (55%), Gaps = 12/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 12  HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 71

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 72  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 131

Query: 124 VAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   K     I + +  ++     V+TTGT++   I  G +   +G   +  +  L
Sbjct: 132 AEEILVNSKKEFKGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPKL 191

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C +
Sbjct: 192 SASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACYL 251

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  + 
Sbjct: 252 TYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETADG 311

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I  
Sbjct: 312 SITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIKN 371

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  E
Sbjct: 372 FYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTKE 431

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RL   G K+G I + + ++  K  +  +     L +  
Sbjct: 432 PYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKHQYQKVIKKYELIDQEIQRLHTTY 491

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+SK+  +            +  + L+ P     ++    P         +E L      
Sbjct: 492 LSSKDPVAIKYGI---TTGISLLQTLARPAVDPYDIIPDFP--------YLEELTTMVRL 540

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I G+ 
Sbjct: 541 HGYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRISGIN 600

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA + +L+ Y++    K N 
Sbjct: 601 PADIQMLMFYLETTRKKNNA 620


>gi|57168067|ref|ZP_00367206.1| glucose inhibited division protein A [Campylobacter coli RM2228]
 gi|57020441|gb|EAL57110.1| glucose inhibited division protein A [Campylobacter coli RM2228]
          Length = 597

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/596 (42%), Positives = 347/596 (58%), Gaps = 3/596 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+ GLMG + D AGIQFR+LN  
Sbjct: 1   MGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNES 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AV+G R Q D + YR+  + ++L   NL++ Q +V     E   +  +     +   
Sbjct: 61  KGVAVQGSRAQIDMDKYRIIARNKLLKLPNLEISQEQVCELIYENGSVVGVKTNLQNTYE 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L  + +      GRLKTGT  R+D 
Sbjct: 121 AKKVILTTGTFLNGLIHVGENKLTAGRVGELASVNLGQNLLSTSLKMGRLKTGTCPRVDA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
           K+I +D  E Q+ D+    FSF T      Q+ C I RTN  TH II  N   + +++G 
Sbjct: 181 KSIDFDVLEIQYGDQNPKAFSFRTKNFNPIQLPCYIARTNTTTHEIIKNNFYRAPLFTGQ 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    Y NG ST+LP E+Q Q +R++
Sbjct: 241 IEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSV 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            G E+  I R GYAIEYDYI P EL+ TLETKKI  L+ AGQINGTTGYEEAAAQG +AG
Sbjct: 301 KGFEEAKITRFGYAIEYDYIEPTELYHTLETKKIKNLYCAGQINGTTGYEEAAAQGFMAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           +N+    +  +     R ++YIGV+IDDL  KG  EPYRMFTSRAE+R+ LR +NA  RL
Sbjct: 361 VNAVLALDNKEPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAIVRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTRT 503
              G +LG + +   +              LL     T    ++    SI  ++      
Sbjct: 421 GKYGKELGLLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITSIVN 480

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
             + ++   F I+ L  +           +  +  E+ Y  Y   Q  + +++K      
Sbjct: 481 LQKIVARSSFDIEKLKKLNTIFENMDEYSLREILNEAKYYHYIAMQKSQVEKMKNLIDMK 540

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           IP DFD++S+  LSNE+ EKL   KP  L  AS+I G+TPAAL++L IYIK    K
Sbjct: 541 IPSDFDFTSVSGLSNEVVEKLQKHKPLTLFAASEISGITPAALDILQIYIKMQKKK 596


>gi|303322268|ref|XP_003071127.1| glucose-inhibited division protein A containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110826|gb|EER28982.1| glucose-inhibited division protein A containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 694

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 383/633 (60%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA               K  I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLRSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQVTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           +   L++LL++    S   S        D   R+A+E L   +  I  +           
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                F + +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E + 
Sbjct: 573 YTPGSFDAKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERH 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A +IEG+TP     LL++++K
Sbjct: 633 ALERVRPESVGMARRIEGVTPTGALRLLMHMRK 665


>gi|320040702|gb|EFW22635.1| mitochondrial translation optimization protein [Coccidioides
           posadasii str. Silveira]
          Length = 694

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 383/633 (60%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA               K  I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLGSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQVTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           +   L++LL++    S   S        D   R+A+E L   +  I  +           
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                F + +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E + 
Sbjct: 573 YTPGSFDAKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERH 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A +IEG+TP     LL++++K
Sbjct: 633 ALERVRPESVGMARRIEGVTPTGALRLLMHMRK 665


>gi|329113882|ref|ZP_08242653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acetobacter pomorum DM001]
 gi|326696892|gb|EGE48562.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acetobacter pomorum DM001]
          Length = 632

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/623 (49%), Positives = 408/623 (65%), Gaps = 10/623 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+GGGHAGCEAAA AA+ GA T L+TH  +T+G+MSCNPAIGG+GKGHLVRE
Sbjct: 7   MNKAYDVIVVGGGHAGCEAAAAAARCGAKTLLLTHHKNTVGAMSCNPAIGGIGKGHLVRE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDG+M R AD AGI F++LN  KGPAV+GPR QADR LYR A+Q  +     LD+ +
Sbjct: 67  VDALDGVMARAADRAGIHFKLLNRSKGPAVQGPRAQADRLLYRQAVQDILADTAGLDIEE 126

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V     +    ++ +  +D        VVLTTGTFL GVIHIG    PAGR+G+ PS 
Sbjct: 127 AAVTDLIYDDQNRVAGVACEDGRQWAAGAVVLTTGTFLDGVIHIGHKSQPAGRIGEQPSV 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L +   K      RLKTGTPARL   TI W        D    PFS +T  ITN Q+ C
Sbjct: 187 ALASRLKKLGLRIARLKTGTPARLKRDTIDWASLAVDRGDISPEPFSRLTASITNPQMVC 246

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  +TH II E++  SA+Y G I   GPRYCPSIEDK+VRF E+ GHQIFLEPE L
Sbjct: 247 GITTTVPKTHDIIREHLHLSAVYGGAISGRGPRYCPSIEDKVVRFSEKTGHQIFLEPEAL 306

Query: 301 NTDV----VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                   VYPNGIST+LP ++Q   I +IPGLEK  I + GYA+EYDY++P+EL  +LE
Sbjct: 307 PDHEGGDLVYPNGISTSLPADVQDAMIHSIPGLEKAVIAQYGYAVEYDYVDPRELTVSLE 366

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            KK   LFLAGQINGTTGYEEA AQGL+AG+N+AR++     +   R  +Y+GVMIDDLT
Sbjct: 367 LKKCPNLFLAGQINGTTGYEEAGAQGLLAGVNAARRAGGQQAVSLDRGKAYLGVMIDDLT 426

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTPIG+  GCIG  R++ FA+ ++E   L  
Sbjct: 427 TQGVSEPYRMFTSRAEYRLTLRADNADVRLTPIGLDWGCIGAERREAFARDMREIEQLTQ 486

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFL--SYPDFSIQNLFSICPDARKFSSLVIE 534
             +S     + L+   I   QDG+ R   E +  + P+ +I+ L    P  +++S     
Sbjct: 487 KAESESWPPQALAQVGIKVAQDGRRRNLLEVIGQAVPENTIEALA---PWVQEYSERARS 543

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            ++ E+ Y+ Y  RQ  E K+++ E +   P+D D+  +  LS E++E+L   +P +   
Sbjct: 544 YVRTEARYSGYLVRQKREIKQLEAETEIRFPQDMDFRKIGGLSAEMQERLEQARPESFGA 603

Query: 595 ASKIEGMTPAALNLLLIYIKKNT 617
           A +I G+TP+AL  +L Y+KK  
Sbjct: 604 AQRIPGITPSALMAVLAYLKKGQ 626


>gi|330794085|ref|XP_003285111.1| hypothetical protein DICPUDRAFT_5571 [Dictyostelium purpureum]
 gi|325084937|gb|EGC38354.1| hypothetical protein DICPUDRAFT_5571 [Dictyostelium purpureum]
          Length = 608

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/611 (46%), Positives = 391/611 (63%), Gaps = 16/611 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAG EA   A+++GA T LIT   +TIG MSCNP+IGG+GKG+LV EIDAL G
Sbjct: 1   VVVIGGGHAGTEACTAASRVGADTLLITQTINTIGVMSCNPSIGGVGKGNLVTEIDALGG 60

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +MG+ AD +G  FR+LN  KG AV GPR Q DRELY+ ++   + + E L + +G V   
Sbjct: 61  IMGKAADESGCLFRILNSSKGSAVHGPRAQIDRELYQESIHNILSTYEKLSIREGMVEDL 120

Query: 128 NTE-----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
             +        +  + +QD ++++   VV+TTGTFL GVIH+G  +IPAGR+GD  + +L
Sbjct: 121 LLDESDPNNRKVIGVSLQDGTIVKTKKVVITTGTFLGGVIHLGNKRIPAGRIGDQAATAL 180

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE--C 240
             +  +  F+ GRLKTGTP RLDG TI ++  E Q  DE   PFSF   K+   Q +  C
Sbjct: 181 SVTLERIGFELGRLKTGTPPRLDGSTINYEGLEIQNGDEIPTPFSFSNRKVKYNQSQLAC 240

Query: 241 GITRTNLETHRIIMENIKHSAIY--SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            +TRTN E+H+II+EN+    +     + K  GPRYCPSIE K+ RF  +  HQI+LEPE
Sbjct: 241 HMTRTNEESHKIILENLDSRPVLDSGENGKGLGPRYCPSIETKLERFEGK-FHQIWLEPE 299

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NTDVVYPNGIS +LPE++Q +F+R+I GLE V ++RPGYAIEYDYI+P+EL  TLETK
Sbjct: 300 GFNTDVVYPNGISMSLPEDVQLKFLRSIQGLENVRMLRPGYAIEYDYIDPRELKHTLETK 359

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSYIGVMIDDLTS 417
           KI+GL+LAGQINGTTGYEEA AQG++AGIN+      +   +  SR++ Y+GV++DDL +
Sbjct: 360 KINGLYLAGQINGTTGYEEAGAQGILAGINAGLSIDEEKQQMVISRSEGYLGVLVDDLVT 419

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            GV EPYRMFTSR+E+RISLR  NAD RLT    K G   + + +   K  +  + +   
Sbjct: 420 VGVDEPYRMFTSRSEFRISLRAHNADMRLTEKAYKFGSASKEQYENLLKKKKIISDVLEF 479

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--RKFSSLVIER 535
           L S+      L +  I+ K   K   A       + + ++   + P           I  
Sbjct: 480 L-SVEYKPSELKTLGINVK--DKMSLADTIAKRKEVNFEHFRHLIPKDLMDNLPEEYIPL 536

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           ++ E  Y  Y+ +  +E ++++  E  LIP+ FD++ +  LS ELK+KLS ++P ++  A
Sbjct: 537 IESECRYMEYSSKHTVEMEKLRNREDSLIPESFDFNEIGQLSTELKQKLSKIRPTSIAAA 596

Query: 596 SKIEGMTPAAL 606
           S+I GMTP AL
Sbjct: 597 SRISGMTPTAL 607


>gi|67540814|ref|XP_664181.1| hypothetical protein AN6577.2 [Aspergillus nidulans FGSC A4]
 gi|40738916|gb|EAA58106.1| hypothetical protein AN6577.2 [Aspergillus nidulans FGSC A4]
 gi|259480152|tpe|CBF71023.1| TPA: mitochondrial translation optimization protein (Mto1),
           putative (AFU_orthologue; AFUA_6G04440) [Aspergillus
           nidulans FGSC A4]
          Length = 700

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/624 (44%), Positives = 392/624 (62%), Gaps = 24/624 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDV+VIGGGHAG EA A AA+ GA TALIT   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRPYDVVVIGGGHAGSEACAAAARSGARTALITPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRELY++ M+ E+L+ ENL +++G
Sbjct: 95  DAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRELYKIYMREELLATENLSIVEG 154

Query: 123 EVAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           +VA     K             I  + ++   +I  S VV+TTGTFL G IHIG    P+
Sbjct: 155 KVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRVVITTGTFLGGEIHIGLKAYPS 214

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+G++ +  L  S  +  F  GRLKTGTP RLD KTI +   + Q  D   +PFS++ +
Sbjct: 215 GRIGEAATFGLSKSLREAGFQLGRLKTGTPPRLDKKTIDFSALQVQKGDMPPMPFSYLNE 274

Query: 232 KITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           ++      Q+   +T TN  +H I+  N+  S      +K  GPRYCPS+E K++RF ++
Sbjct: 275 RVQVDEDAQLNSFLTYTNNASHDIVRANLDKSVHIRETVK--GPRYCPSLESKVIRFKDK 332

Query: 289 NGHQIFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
             H I+LEPEG   + V YPNGIS  +PE+ Q + ++TI GLE V +++PGY +EYDYI+
Sbjct: 333 TQHLIWLEPEGFAPNEVIYPNGISMTIPEDAQFELLKTIRGLENVRMLQPGYGVEYDYID 392

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L+PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +   + +  +R+D Y
Sbjct: 393 PRNLWPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGANAGLSAQGREPLTLTRSDGY 452

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG+MIDDL +KGV EPYRMFT+R+E+R+S R DNAD RLT +  K G +G++R   F+  
Sbjct: 453 IGIMIDDLITKGVSEPYRMFTARSEFRLSARSDNADLRLTRLAHKAGIVGKKRWSHFSDT 512

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--- 524
             +   L+SLL +  L     +   ++ + DG  R+A+E L++    + +L         
Sbjct: 513 EAQIKELQSLLSNTKLPLAAWARKGLTVRNDGTVRSAHELLAHRAVGLDDLIPHIESPSG 572

Query: 525 ----ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               A  F+  +  R+ +E+ YA Y  +Q   A  ++  E   IP D DY+++  +S E 
Sbjct: 573 TAYTASSFAPEIRNRVIVEARYAPYVLKQDKAAARVRRYEDFPIPLDLDYNAIHGISTEE 632

Query: 581 KEKLSILKPFNLLQASKIEGMTPA 604
           ++ L  ++P N+  A +IEG+TPA
Sbjct: 633 RQALERVRPANIGMARRIEGVTPA 656


>gi|308189647|ref|YP_003922578.1| glucose inhibited division protein A [Mycoplasma fermentans JER]
 gi|307624389|gb|ADN68694.1| glucose inhibited division protein A [Mycoplasma fermentans JER]
          Length = 617

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/620 (40%), Positives = 346/620 (55%), Gaps = 12/620 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD +VIGGGHAG EAA   A     T LI+     +G M CNP+IGG  KG + REID
Sbjct: 9   HKYDAVVIGGGHAGLEAAFALAHKNHKTVLISLNKERLGMMPCNPSIGGPAKGIITREID 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+ G  AD + IQ ++LN  KGPAVR  R Q D+E Y       +L + NLD+I+  
Sbjct: 69  ALGGMQGLWADLSMIQLKMLNQSKGPAVRALRAQIDKEKYMKIALEYVLKEPNLDLIEDI 128

Query: 124 VAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                   K     I + +  ++     V+TTGT++   I  G +   +G   +  +  L
Sbjct: 129 AEEILVNSKKEFKGIKLANGDIVEAEVCVVTTGTYMDSRILRGDVIKISGPDNEKTTPKL 188

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S  +  F   RLKTGTP R+   +I + + E++   +  + FS  ++    RQI C +
Sbjct: 189 SASLKEHGFIIQRLKTGTPPRIFSDSIDYSQVEQEVLSDTNLSFSSRSNVKLPRQIACYL 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  ETH+II EN+  SA+Y G IK  GPRYCPS+EDKIV+F  +  HQIF EPE  + 
Sbjct: 249 TYTTPETHKIIEENLTKSAMYGGIIKGIGPRYCPSVEDKIVKFPSKERHQIFFEPETADG 308

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            + Y NG+ST++P E+Q   IR+IPGL+K  I +  YAIEYD I+P +L PTLETK I  
Sbjct: 309 SITYVNGLSTSMPVEVQELMIRSIPGLQKCKIQKYAYAIEYDAIDPLQLKPTLETKIIKN 368

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            + AGQINGT+GYEEAAAQGL+AGIN+A    K D I   R  +YIGV+IDDL +KG  E
Sbjct: 369 FYTAGQINGTSGYEEAAAQGLIAGINAALNLEKKDGIVILRNHAYIGVLIDDLVTKGTKE 428

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD RL   G K+G I + + ++  K  +  +     L +  
Sbjct: 429 PYRMLTSRAEYRLLLRNDNADIRLAEYGYKIGLIDKHQYQKVIKKYELIDQEIQRLHTTY 488

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           L+SK+  +            +  + L+ P     ++    P         +E L      
Sbjct: 489 LSSKDPVAIKYGI---TTGISLLQTLARPAVDPYDIIHDFP--------YLEELTTMVRL 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +Q  +A +    E   IP+D DY+ +  ++ E K+KL  +KP  + QAS+I G+ 
Sbjct: 538 HGYIEKQKSDANKAVRLENYKIPEDLDYNKINNIATEAKQKLIKVKPTTIGQASRISGIN 597

Query: 603 PAALNLLLIYIKKNTVKLNE 622
           PA + +L+ Y++    K N 
Sbjct: 598 PADIQMLMFYLETTRKKNNA 617


>gi|242005272|ref|XP_002423494.1| glucose inhibited division protein A, putative [Pediculus humanus
           corporis]
 gi|212506598|gb|EEB10756.1| glucose inhibited division protein A, putative [Pediculus humanus
           corporis]
          Length = 644

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/632 (43%), Positives = 386/632 (61%), Gaps = 18/632 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            ++ YDVIV+GGGHAG EA   A+++G ++ LITHK  +IG MSCNP+ GG+GKGHL++E
Sbjct: 17  FSKKYDVIVVGGGHAGVEACCAASRMGVNSLLITHKKESIGEMSCNPSFGGIGKGHLMKE 76

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVI 120
           +DALDG+  R+ D  G+ ++VLN  KGPAV GPR Q DR+LY+  +Q E+ +   NLDV+
Sbjct: 77  VDALDGVCARICDLTGVHYKVLNKSKGPAVWGPRAQIDRKLYKKEIQNEVFNKTSNLDVM 136

Query: 121 QGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
              V       E N    +V +    I   TV+LTTGTFL   I+IG    PAGRMGD P
Sbjct: 137 FTSVDDLLIDKESNSCLGVVTKLGDKILSKTVILTTGTFLNAQINIGLEVKPAGRMGDEP 196

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ- 237
           +  L  +  +  F  GRLKTGTP RL  +TI +    +Q  D    PFSF+  K+  R  
Sbjct: 197 AIPLAKTLERLKFSLGRLKTGTPPRLRKETIDFSVCIRQEPDNPSQPFSFLNKKVWIRPE 256

Query: 238 --IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
             I C +T TN +  +II +N+  +     +I   GPRYCPSIE K +RF  R  HQI+L
Sbjct: 257 NQIPCFLTHTNEKIGKIIADNMHLNRHVREEIN--GPRYCPSIESKYLRF-NRAQHQIWL 313

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL++DV+YP G+S  LPE++Q + +  +PGLEK  I++PGY +EYDY++P+EL P+L
Sbjct: 314 EPEGLDSDVIYPGGLSCTLPEDLQQKIVNELPGLEKAVIVQPGYGVEYDYVDPRELNPSL 373

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET K+  LF AGQINGTTGYEEAAAQG++AGIN+A K         +R++ YIGV+IDDL
Sbjct: 374 ETIKVPNLFFAGQINGTTGYEEAAAQGVIAGINAAAKCQGKPEFIVNRSEGYIGVLIDDL 433

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T+ G  EPYRMFTSRAE+R+ LRPDNAD RLT  G  +GC+ + R +         N   
Sbjct: 434 TTLGTNEPYRMFTSRAEFRLYLRPDNADLRLTKKGYDIGCVSKDRYELTLSVENILNETI 493

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF----SIQNLFSICPDARKF--- 528
             LKS   +  +     +   +   T        +P      +   L S+   A K    
Sbjct: 494 KKLKSDFKSVYSWCDI-LKMNKSKNTEKVSAMQMFPSVRFNANFDELRSLSETAFKHLPE 552

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
            +++  R+ +E+ Y +   ++++E +E++ +E   IP   DY      +S E + KLS+ 
Sbjct: 553 DNILCHRILVEAIYESALEQELLEIEEVRKQESLKIPNSIDYFKESLNMSLEERSKLSLA 612

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           KP  +  AS+I G+TPA++  LL Y++KN ++
Sbjct: 613 KPQTIAAASRIPGVTPASIIYLLKYVQKNALQ 644


>gi|332244026|ref|XP_003271171.1| PREDICTED: LOW QUALITY PROTEIN: protein MTO1 homolog,
           mitochondrial-like [Nomascus leucogenys]
          Length = 717

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/666 (42%), Positives = 402/666 (60%), Gaps = 51/666 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S  V  D S +   +V+LTTGTF RG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGAVFMDGSTVYAESVILTTGTFXRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D+  IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHTPDDPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN +   I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPKVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR----------------- 336
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+                 
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAI 392

Query: 337 --------PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
                   PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN
Sbjct: 393 SSHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGIN 452

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT 
Sbjct: 453 ASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTL 512

Query: 449 IGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---A 504
            G K  GC+ ++R +R            S+LKS+  +S    +                A
Sbjct: 513 RGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFSSSKWKNLIPEASISTSRSLPVRA 572

Query: 505 YEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E KE++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKEVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KN 616
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K   + 
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRR 692

Query: 617 TVKLNE 622
              +NE
Sbjct: 693 QAAMNE 698


>gi|117927029|ref|YP_867646.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Magnetococcus sp. MC-1]
 gi|205831531|sp|A0LE47|MNMG_MAGSM RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|117610785|gb|ABK46240.1| glucose inhibited division protein A [Magnetococcus sp. MC-1]
          Length = 599

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/613 (45%), Positives = 386/613 (62%), Gaps = 17/613 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N+ +DV+V+G GHAGCEAA  AA LG  T L T    +IG MSCNPAIGG+GKGHLV+
Sbjct: 1   MFNQHFDVVVVGAGHAGCEAAHAAATLGCRTLLSTQVIDSIGQMSCNPAIGGIGKGHLVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G+MG VAD +GIQF+ LN +KGPAV G R Q D+  YR  M++ + +  NL++ 
Sbjct: 61  ELDALGGVMGIVADQSGIQFKKLNQRKGPAVHGSRAQIDKMAYRKNMKKILDACANLEIK 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q EV     + + +  +    N +  C  +V+ TGTFL G+IHIG+ K P+GR+GD  S+
Sbjct: 121 QAEVVELIIKNSCVVGVKTDWNEVYSCGAIVIATGTFLDGLIHIGERKFPSGRLGDKESH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +         R KTGTP RLDG+T+  +K  +Q  D    PFSFM DKI   ++ C
Sbjct: 181 PLAVNIKSLGLKISRFKTGTPPRLDGRTVNIEKLNRQDGDAIPSPFSFMHDKIERPEMPC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I +T+ ET +II +NI  SA+YSG I+  GPRYCPSIEDKI +F ER  HQ+FLEPEG 
Sbjct: 241 WIAQTSKETKQIIEKNIHRSAMYSGQIEGVGPRYCPSIEDKIKKFKEREVHQVFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y NG+ST++P ++Q Q IR+I GLE   I++PGYAIEYD + P EL  TL+TKK 
Sbjct: 301 NTNEMYVNGVSTSMPIDVQWQMIRSIVGLENAQIVKPGYAIEYDMVMPTELDHTLKTKKY 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GL+LAGQINGTTGYEEAAAQG++AG+N+AR + K     F R D Y GVM+DDL ++GV
Sbjct: 361 DGLYLAGQINGTTGYEEAAAQGMIAGLNAARFAKKESSYRFERYDGYFGVMVDDLVTRGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSR+E RI  R DNAD RLTP+G +LG +G +R +++    ++Y+ L  L + 
Sbjct: 421 DEPYRMFTSRSELRIVHREDNADMRLTPLGHELGLVGHKRWEKYLSKKKQYDLLEDLSQK 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             +  + +S                  L   D  ++ +          S  V+E  + + 
Sbjct: 481 FKINGQPVSE----------------ILKRTDCDLEKVCE-AMQLDALSKNVLEIYKNDL 523

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y+ Y  + + E   ++     ++PK+ D+S + +LS+E++ +L       +      +G
Sbjct: 524 IYSGYEKKIIAENSRVEKYRSHVLPKEIDWSKVASLSSEVRLRLEKSDCRTVADVIATKG 583

Query: 601 MTPAALNLLLIYI 613
           +TPA++  +LIY+
Sbjct: 584 VTPASVVNILIYL 596


>gi|258543707|ref|YP_003189140.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634785|dbj|BAI00761.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637841|dbj|BAI03810.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640895|dbj|BAI06857.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643950|dbj|BAI09905.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256647005|dbj|BAI12953.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256650058|dbj|BAI15999.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256653048|dbj|BAI18982.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256656102|dbj|BAI22029.1| glucose inhibited division protein A GidA [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 626

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/621 (49%), Positives = 406/621 (65%), Gaps = 6/621 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVIV+GGGHAGCEAAA AA+ GA T L+TH  +T+G+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MNKAYDVIVVGGGHAGCEAAAAAARCGAKTLLLTHHKNTVGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDG+M R AD AGI F++LN  KGPAV+GPR QADR LYR A+Q  + + E LD+ +
Sbjct: 61  IDALDGVMARAADRAGIHFKLLNRSKGPAVQGPRAQADRLLYRQAVQDILANTEGLDIEE 120

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G V      ++N ++ +  +         VVLTTGTFL GVIHIG    PAGR+G+ PS 
Sbjct: 121 GAVTDLICDDQNRVAGVACEGGRQWAAGAVVLTTGTFLDGVIHIGHKSQPAGRIGEQPSV 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L +          RLKTGTPARL   TI W        D    PFS +T  ITN Q+ C
Sbjct: 181 ALASRLKNLGLRIARLKTGTPARLKRDTIDWASLAVDRGDVSPEPFSRLTKSITNPQMVC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GIT T  +TH II E++  SA+Y G I   GPRYCPSIEDK+VRF E+ GHQIFLEPE L
Sbjct: 241 GITATVQKTHDIIREHLHLSAVYGGAISGRGPRYCPSIEDKVVRFSEKTGHQIFLEPEAL 300

Query: 301 NTDV----VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                   VYPNGIST+LP ++Q   I +IPGLEK  I + GYA+EYDY++P+EL  +LE
Sbjct: 301 PEHEGGDLVYPNGISTSLPADVQDAMIHSIPGLEKAVIAQYGYAVEYDYVDPRELTVSLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            KK   LFLAGQINGTTGYEEA AQGL+AG+N+AR++     +   R  +Y+GVMIDDLT
Sbjct: 361 LKKCPNLFLAGQINGTTGYEEAGAQGLLAGVNAARRAGGQKAVSLDRGKAYLGVMIDDLT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTPIG++ GCIG  R   F + +QE + L  
Sbjct: 421 TQGVSEPYRMFTSRAEYRLTLRADNADVRLTPIGLEWGCIGAERCAVFERDMQEIDQLTQ 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             +S     + L+   I   QDG+ R   E +         + ++ P  +++S      +
Sbjct: 481 KAESESWPPQALAQVGIKVAQDGRRRNLLEVMGQA-VHEDTIETLAPWVQEYSERARSYV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E+ Y+ Y  RQ  E K+++ E +   P++ D+  +  LS E++E+L   +P +   A 
Sbjct: 540 RTEARYSGYLVRQKREIKQLEAETEIRFPQNMDFRKIGGLSAEMQERLEQARPESFGAAQ 599

Query: 597 KIEGMTPAALNLLLIYIKKNT 617
           +I G+TP+AL  +L Y+KK  
Sbjct: 600 RIPGITPSALMAVLAYLKKGQ 620


>gi|70984234|ref|XP_747634.1| mitochondrial translation optimization protein (Mto1) [Aspergillus
           fumigatus Af293]
 gi|66845261|gb|EAL85596.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus fumigatus Af293]
          Length = 693

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/634 (44%), Positives = 385/634 (60%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKRYMQEELLATEGLSIVEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDMKTIDFAPLEVQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETV--RGPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG   + V YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVIYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDKRWRSFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            +   L++LL    L+S   S      + D   R+A + L      I  L          
Sbjct: 513 AQIKELQNLLAKTKLSSTMWSRKGFKTRTDSSVRSALDLLCLDGVDIDALIPHIESPSGM 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F  ++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDPIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL+++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRR 666


>gi|170050885|ref|XP_001861513.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Culex quinquefasciatus]
 gi|167872390|gb|EDS35773.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Culex quinquefasciatus]
          Length = 658

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/624 (44%), Positives = 403/624 (64%), Gaps = 13/624 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+V+GGGHAG EA A AA++GA T L+T K +TIG MSCNP+ GG+GKGHL+REIDA
Sbjct: 32  SYDVVVVGGGHAGTEACAAAARMGARTLLVTQKRATIGEMSCNPSFGGIGKGHLIREIDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+ GR  D +G+Q++VLN ++GPAV GPR Q DR LYR  +QRE+   E LD+++  V
Sbjct: 92  LDGVCGRACDRSGVQYKVLNKRRGPAVWGPRAQIDRGLYRAVIQRELGETEGLDIVEASV 151

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I  I +++  +IR  ++V+TTGTFLRG I+IG    PAGR+GD P+  L  
Sbjct: 152 EDIVLEGGRIEGISLKNGDVIRTKSLVITTGTFLRGQINIGLETRPAGRIGDEPAIGLAT 211

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECG 241
           S  +  F   RLKTGTP R+   +I +   E+   D   +PFSFM D++      Q++C 
Sbjct: 212 SLEQLGFKLARLKTGTPPRIKASSIDFSTLERHPGDNPPVPFSFMNDRVWLHAEDQLDCF 271

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T+ E + I+  N+  +   + ++   GPRYCPSIE K++RFG +  HQI+LEPEG +
Sbjct: 272 LTHTSPEVNEIVKRNLHCNRHVTEEL--TGPRYCPSIESKVLRFGGKT-HQIWLEPEGFD 328

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           ++++YPNG+S  LPEE Q + +R + GLEK  + RPGY +EYD+++P+EL PTLETK++ 
Sbjct: 329 SELIYPNGLSCTLPEEEQVKLVRCLRGLEKAEVARPGYGVEYDFVDPRELLPTLETKRVR 388

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GL  AGQINGTTGYEEAAAQG++AG N+A K  + D +  SRT+ Y+GV++DDLT+ G  
Sbjct: 389 GLLFAGQINGTTGYEEAAAQGVLAGANAAAKVLERDQLLISRTEGYLGVLVDDLTTLGTN 448

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRMFTSRAE+R+SLRPDNAD RLT  G +LG + E R ++      +      LL  +
Sbjct: 449 EPYRMFTSRAEFRLSLRPDNADLRLTEKGYQLGLVSEERYQQMVTIRSKIRRAVELLSDI 508

Query: 482 VLTSKNLSSTS-ISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF---SSLVIER 535
              S        ++  +    ++A+E L+    D   + L  + P    +     ++ ER
Sbjct: 509 KKGSNTWKEQLRLAQGKSSVYKSAFEMLAISVDDVKTEQLCELEPTVLGWISEDRVLCER 568

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSILKPFNLLQ 594
           L+IE+ Y+     Q+ E +E++  E+  IPK  DY S    LS E +EKL  ++P  +  
Sbjct: 569 LKIEALYSLSIQDQIKEVEEVQKHEQLHIPKSIDYLSKSLNLSFEEQEKLVHIQPQTIAA 628

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I+G+TP+ +  L+ ++K+  +
Sbjct: 629 ASRIQGITPSTIVRLVRFVKQYEM 652


>gi|159122420|gb|EDP47541.1| mitochondrial translation optimization protein (Mto1), putative
           [Aspergillus fumigatus A1163]
          Length = 693

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/634 (44%), Positives = 385/634 (60%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+L+ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKRYMQEELLATEGLSIVEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDMKTIDFAPLEVQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETV--RGPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG   + V YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVIYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +     +  +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPLTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + ++R + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDKRWRSFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            +   L++LL    L+S   S      + D   R+A + L      I  L          
Sbjct: 513 AQIKELQNLLAKTKLSSTMWSRKGFKTRTDSSVRSALDLLCLDGVDIDTLIPHIESPSGM 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F  ++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDPIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL+++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRR 666


>gi|115497106|ref|NP_001069537.1| protein MTO1 homolog, mitochondrial [Bos taurus]
 gi|94574214|gb|AAI16078.1| Mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Bos taurus]
 gi|296484283|gb|DAA26398.1| mitochondrial translation optimization 1 homolog [Bos taurus]
          Length = 692

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/618 (43%), Positives = 381/618 (61%), Gaps = 23/618 (3%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +GI ++VLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGIHYKVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V            T K  +S +
Sbjct: 117 RKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKYRVSGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +VVLTTGTFLRG+I IG    PAGR+GD P+  L  +  K  F  GRLK
Sbjct: 177 VLADGSKVYAESVVLTTGTFLRGMIVIGLEMHPAGRLGDQPAVGLAQTLEKLGFVVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  +++ +    KQ  D   IPFSF+   +      Q+ C +T TN     I++
Sbjct: 237 TGTPPRIAKESVNFSILNKQTPDNPSIPFSFINQTVWIKPEDQLPCYLTHTNPRVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  +          GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 297 ENLHLNCHVKETT--RGPRYCPSIESKVLRFPNR-VHQVWLEPEGMDSDLIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLE   +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 354 PAELQEKMITCIRGLENAKMIQPGYGVQYDYMDPRQISPSLETHLVQRLFFAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +         SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 414 YEEAAAQGVIAGINASLRVRHKPPFVISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-S 492
           +SLRPDNAD+RLT  G  + GC+ ++R +R +          S+LKS+   S    +   
Sbjct: 474 LSLRPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSLEEGISMLKSIEFLSTKWKNLIP 533

Query: 493 ISFKQDGKTRTAYEF--LSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTG 547
            S    GK+        L Y +  ++ L    P+  +K++    + ERL+IE++Y +   
Sbjct: 534 ESSISSGKSLPLRALDVLKYEEVDMELLARAVPEPLKKYTQCRELAERLKIEATYESVLF 593

Query: 548 RQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
            Q  E KE++ +E   +PKD DY +L   +LS E++EKL   +P  +  AS+I G+T AA
Sbjct: 594 HQQQEIKEVQRDEALQLPKDLDYLTLKDISLSYEVREKLHFSRPQTIGAASRIPGVTAAA 653

Query: 606 LNLLLIYIKKNTVKLNEI 623
           +  LL ++K    +   +
Sbjct: 654 IVNLLRFVKTTQQRQAAM 671


>gi|119196609|ref|XP_001248908.1| hypothetical protein CIMG_02679 [Coccidioides immitis RS]
          Length = 694

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/633 (44%), Positives = 381/633 (60%), Gaps = 23/633 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REID
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTVIREID 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G++ D AGIQFRVLN  KGPAV GPR Q DR+LY+  M  E+ +   L +++G+
Sbjct: 95  ALDGVAGKIVDKAGIQFRVLNRSKGPAVWGPRAQIDRDLYKKYMLEELSNYPGLSIVEGK 154

Query: 124 VAGFNTE----------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           VA               K  I  + ++   +I    VV+TTGTFL G IHIG    P+GR
Sbjct: 155 VADIVVSREDLGSTPGVKGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEVFPSGR 214

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           MG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++ D +
Sbjct: 215 MGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIEFSALEVQPGDSPPSPFSYLNDTV 274

Query: 234 T---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                 Q+ C  T TN   H I+  N+  S      +K  GPRYCPS+E KI+RF ++  
Sbjct: 275 DVGDEGQLTCWSTYTNENAHAIVKANLDKSVHIRETVK--GPRYCPSLESKILRFKDKPR 332

Query: 291 HQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
           H I+LEPEG    DV+YPNGIS  +P + Q++ +RTI GLE V +++PGY +EYDY++P+
Sbjct: 333 HMIWLEPEGFAPNDVIYPNGISMTIPADAQYEMLRTIQGLENVKMLQPGYGVEYDYVDPR 392

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG
Sbjct: 393 SLKSTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKPPMTLSRSDGFIG 452

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +M+DDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G + ++R   F+    
Sbjct: 453 IMVDDLITKGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVVTDKRWNHFSDTKY 512

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR--- 526
           +   L++LL++    S   S        D   R+A+E L   +  I  +           
Sbjct: 513 QLLELQTLLENTKYPSTVWSRKGFRVHTDSSLRSAFELLCVNNADIDAIIPHITSPSGIS 572

Query: 527 ----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
                F   +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E + 
Sbjct: 573 YTSGSFDPKIKARVTIEGTYSPYIKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERH 632

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            L  ++P ++  A +IEG+TP     LL++I+K
Sbjct: 633 ALERVRPESVGMARRIEGVTPTGALRLLMHIRK 665


>gi|119467688|ref|XP_001257650.1| mitochondrial translation optimization protein (Mto1), putative
           [Neosartorya fischeri NRRL 181]
 gi|119405802|gb|EAW15753.1| mitochondrial translation optimization protein (Mto1), putative
           [Neosartorya fischeri NRRL 181]
          Length = 692

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/634 (44%), Positives = 386/634 (60%), Gaps = 23/634 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R+YDV+VIGGGHAG EA+A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++REI
Sbjct: 35  TRAYDVVVIGGGHAGSEASAAAARSGARTALVTPSLSNIGVCSCNPSFGGIGKGTMIREI 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+LY+  MQ E+++ E L +++G
Sbjct: 95  DAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRDLYKKYMQEELVATEGLSIVEG 154

Query: 123 EVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +VA     K            I  + ++   +I    VV+TTGTFL G IHIG    P+G
Sbjct: 155 KVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVVITTGTFLGGEIHIGLEAYPSG 214

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS++   
Sbjct: 215 RMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDLKTIDFPPLEIQRGDSPPQPFSYLNTT 274

Query: 233 IT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           +      Q+ C +T TN  +H I+  N+  S      +   GPRYCPS+E KI+RF ++ 
Sbjct: 275 VDVGDEGQLTCWMTHTNEASHEIVRANLDKSIHIRETV--RGPRYCPSLESKIIRFTDKK 332

Query: 290 GHQIFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
            HQI+LEPEG   + V YPNGIS  +P + Q+  +RT+ GLE V +++PGY +EYDYI+P
Sbjct: 333 QHQIWLEPEGFAPNEVVYPNGISMTIPADAQYALLRTVRGLENVRMLQPGYGVEYDYIDP 392

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTLETK ISGL+LAGQINGTTGYEEAA QG++AG N+   +        +R+D +I
Sbjct: 393 RNLRPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGTNAGLSAQGRQPFTLTRSDGFI 452

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT +    G + +RR + F    
Sbjct: 453 GIMIDDLITKGVSEPYRMFTARSEYRISTRSDNADLRLTRMARDAGVVSDRRWRYFTDTE 512

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD---- 524
            +   L++LL +  L+S   S      + D   R+A + L      I  L          
Sbjct: 513 AQIKELQNLLANTKLSSTVWSRKGFKTRTDSSVRSALDLLCLDGVDIDALIPHIESPSGM 572

Query: 525 ---ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                 F S++  R+ IE  YA Y  RQ   A++   +E  ++P D DYS +  +S E +
Sbjct: 573 AYTPSSFDSIIRTRVSIEGRYAPYVKRQEAMARKFLQDESLILPPDLDYSKVQGISTEER 632

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           + L  ++P ++  A +IEG+TPA    LL+++++
Sbjct: 633 QALERVRPVSVGMARRIEGVTPAGALRLLMHVRR 666


>gi|114608197|ref|XP_527435.2| PREDICTED: protein MTO1 homolog, mitochondrial isoform 4 [Pan
           troglodytes]
          Length = 717

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/666 (42%), Positives = 400/666 (60%), Gaps = 51/666 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR----------------- 336
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+                 
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAI 392

Query: 337 --------PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGIN 388
                   PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN
Sbjct: 393 SAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGIN 452

Query: 389 SARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT 
Sbjct: 453 ASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTL 512

Query: 449 IGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---A 504
            G K  GC+ ++R +R            S+LKS+   S                     A
Sbjct: 513 RGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRA 572

Query: 505 YEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEK 561
            + L Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E 
Sbjct: 573 LDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEA 632

Query: 562 RLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KN 616
             +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K   + 
Sbjct: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQR 692

Query: 617 TVKLNE 622
              +NE
Sbjct: 693 QAAMNE 698


>gi|296114340|ref|ZP_06832994.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295979101|gb|EFG85825.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 624

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/619 (49%), Positives = 408/619 (65%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            N +YDVIVIGGGHAGCEAAA AA+ GA T L+TH+ +T+G MSCNPAIGG+GKGHLVRE
Sbjct: 5   YNATYDVIVIGGGHAGCEAAAAAARCGARTMLLTHQRATVGVMSCNPAIGGIGKGHLVRE 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLMG+ AD AGI F++LN  KGPAV GPR QADR LY+ A+   +   E L++++
Sbjct: 65  IDALDGLMGKAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYQRAILDLLAETEGLEIVE 124

Query: 122 GEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       +  + +  +V +D  +     VVLT GTFLRGVIH+G    PAGR+G++P+ 
Sbjct: 125 GAAGDLVVDDGHTVRGVVCEDGRIFHAGAVVLTAGTFLRGVIHVGHDSQPAGRVGEAPAR 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L           GRLKTGTPAR+   +I WD   +   D    PFS MTD ITN Q+ C
Sbjct: 185 RLGERLQALGLRMGRLKTGTPARIARDSIDWDALAEDRGDAIPEPFSRMTDTITNPQVSC 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE-- 298
            IT T   TH II E++  SAIY G I   GPRYCPSIEDK+VRF +R+ HQIFLEPE  
Sbjct: 245 RITATTPRTHDIIREHLHLSAIYGGAISGRGPRYCPSIEDKVVRFAQRDSHQIFLEPEAL 304

Query: 299 --GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                  +VYPNGIST+LP ++Q Q + +IPGLE+  I+RPGYA+EYDY++P+EL P LE
Sbjct: 305 PDNPGGGLVYPNGISTSLPADVQEQMLHSIPGLERCRIVRPGYAVEYDYVDPRELTPALE 364

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K + GLFLAGQ+NGTTGYEEA AQG+VAGIN+AR++     +   R  +YIGVMIDDLT
Sbjct: 365 LKSLPGLFLAGQVNGTTGYEEAGAQGIVAGINAARRAAGEGAVTLDRGTAYIGVMIDDLT 424

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR++LR DNAD RLTP+GM  GCIG  R++RFA+     +    
Sbjct: 425 TQGVSEPYRMFTSRAEYRLTLRADNADLRLTPLGMAWGCIGPARRQRFAEEQAAIDMAME 484

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             ++     + L    I+   DG+ R+  + ++     +  + ++ P     S  V + +
Sbjct: 485 RARTDTYPPETLRREGITVSADGRARSLLDVMATGAL-MDVVENVAPWVGSLSPRVRQHV 543

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
             E+ Y+ Y  RQ  E +++  + + ++P D DY ++  LS E++E+LS  +P     A 
Sbjct: 544 ATEARYSGYLSRQEREIRQLANDGRLVLPHDLDYHAIGGLSTEMQERLSQARPVTFGAAQ 603

Query: 597 KIEGMTPAALNLLLIYIKK 615
           +I G+TP+AL  +L ++++
Sbjct: 604 RIPGITPSALVAVLSHVRQ 622


>gi|190346857|gb|EDK39035.2| hypothetical protein PGUG_03133 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 703

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/643 (41%), Positives = 395/643 (61%), Gaps = 30/643 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAGCEAA  +A+ G  T LIT   S IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 57  VVVIGGGHAGCEAATGSARSGTPTTLITPDISKIGTASCNPSMGGVGKGTLLREVDALDG 116

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  ++ D AGI F++LN  KG AV GPR Q DR +Y   MQ+ IL+  NL V++ EV   
Sbjct: 117 VASKITDKAGIHFKILNASKGAAVHGPRAQIDRSIYLKEMQKTILNYPNLTVLEAEVKDI 176

Query: 128 NTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             E                I  +V+ D+ ++ CS VV+TTGTFL   IHIG    PAGRM
Sbjct: 177 IIEDVETNSSDFTGRKYGSIVGVVLGDSRVLSCSKVVVTTGTFLSAEIHIGLESFPAGRM 236

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI- 233
           G++ +  L  +F +  F  GRLKTGTP RL  +TI ++   +Q +D    P S+M+ K+ 
Sbjct: 237 GENATFGLSKTFKEAGFRLGRLKTGTPPRLSSRTIRYEGLSEQKSDYPPAPMSYMSSKVD 296

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++ + C IT T  E H++I +N+  S      +K  GPRYCPSIE KI++F ++  H 
Sbjct: 297 LQDQLVSCHITFTTAEMHKLIADNLDKSIHIKETVK--GPRYCPSIESKIIKFPQKTSHM 354

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL+TD+VYPNGIS  +P E+Q + ++ +PG E V +++PGY +EYD+++P+EL 
Sbjct: 355 VWLEPEGLDTDLVYPNGISCTMPHELQEKLVKLMPGCEDVKMVQPGYGVEYDFVDPRELR 414

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+         +   R+D Y+GV++
Sbjct: 415 QTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLSLAGKPPLIVQRSDGYLGVLV 474

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R K +   +  ++
Sbjct: 475 DDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLTEKGYLAGVVSEERYKHYKNEMNNFD 534

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFS--------I 521
            ++S L+S+ L+    +      + D         ++ LSY D  ++ L          +
Sbjct: 535 AIKSFLQSVSLSGARWAPALKGTESDVNRTAVVDGWKLLSYRDVDLELLMKSLPQIVGDL 594

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNE 579
            P     +  ++ R+ +ES+Y  +  ++    +  K +E  L+PK+F Y++   L  S E
Sbjct: 595 PPVFDSINPRLLNRIDVESTYEPWMKKEEAHLRAYKADENLLLPKNFVYNNEGNLKISYE 654

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           +   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L +
Sbjct: 655 VCHLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQSQLAQ 697


>gi|183227703|ref|NP_001116698.1| protein MTO1 homolog, mitochondrial isoform c [Homo sapiens]
          Length = 732

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/679 (41%), Positives = 399/679 (58%), Gaps = 63/679 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAA--------------------------------- 380
           +LET  +  LF AGQINGTTGYEEAAA                                 
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQLQAILLPQPSLVAGT 452

Query: 381 -------QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
                  QG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+
Sbjct: 453 AGMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEF 512

Query: 434 RISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS 492
           R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S       
Sbjct: 513 RLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLI 572

Query: 493 ISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
                         A + L Y +  + +L    P+  +K++    + ERL+IE++Y +  
Sbjct: 573 PEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVL 632

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPA
Sbjct: 633 FHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPA 692

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A+  LL ++K    + + +
Sbjct: 693 AIINLLRFVKTTQRRQSAM 711


>gi|108758960|ref|YP_635597.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Myxococcus xanthus DK 1622]
 gi|123247073|sp|Q1CVH6|MNMG_MYXXD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|108462840|gb|ABF88025.1| glucose inhibited division protein A [Myxococcus xanthus DK 1622]
          Length = 615

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/625 (41%), Positives = 358/625 (57%), Gaps = 30/625 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAG EAA   A++G +T  +T K      +SCNPA+GG  KGHLVRE
Sbjct: 1   MGLRYDVIVVGLGHAGSEAALACARMGLATLGLTLKRERSAVLSCNPAVGGTAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR AD  G  F+ LN  KGPAV+  R   DR+ Y + MQ  + SQ NL V +
Sbjct: 61  LDALGGEMGRAADQVGTHFKTLNASKGPAVQASRLLCDRDAYAVGMQAVLFSQPNLTVRE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEVA        +  +V+ D + +  S V+LTTGTFL+ ++H+G+ K   GR+GD  +  
Sbjct: 121 GEVAALVAGGGRVEGVVLGDGTQVSASAVLLTTGTFLQALMHVGEQKEVGGRLGDDAARG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--------I 233
           L  S     F  GR KTGTPARL   +I WD  E Q  D R+ PFS+ T           
Sbjct: 181 LSESLRALGFTLGRFKTGTPARLARASIDWDALEPQPGDTRVRPFSWRTKVEGEGGMPFP 240

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               + C +T T   TH ++ +N+  S +Y GDI   GPRYCPS+EDK+VRF  R  HQ+
Sbjct: 241 RQPSVTCALTETTPRTHAVLRDNLHRSPLYQGDIVGRGPRYCPSLEDKVVRFASRERHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG  + +VYP G+ST+LP ++Q  F+ TI GLE+V ++R GYA+EYDY  P +L  
Sbjct: 301 FLEPEGPTSPLVYPAGLSTSLPADVQLTFLHTIRGLEQVEVVRFGYAVEYDYAPPTQLKA 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK I+GL+ AGQ+NGT+GYEEAA QGL AGIN+A +      +   R +++  V++D
Sbjct: 361 TLETKAIAGLYFAGQLNGTSGYEEAAFQGLWAGINAALQLKGEPPLLPGRDEAHGAVLVD 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EP+RMFTSR+E+R+ LR  NAD RL   G ++G +     +R     +    
Sbjct: 421 DLVTKGVDEPFRMFTSRSEHRLKLREGNADLRLARHGHRVGLLPREALERVEARGRAVTE 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + LK   L ++                     L  P+ +   L     D    S  V 
Sbjct: 481 EVARLKRTGLAAR---------------------LRRPEVTYAQLGEGREDWPVLSPDVA 519

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKR-LIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           E +++E  Y  Y  +    A        R  IP+ + +  +  LS+E  EKL+  +P  +
Sbjct: 520 EEVEVEVKYEGYVAQAARAAAREAESTDRWRIPEGYCFHEVRGLSSEAVEKLTAHRPGTV 579

Query: 593 LQASKIEGMTPAALNLLLIYIKKNT 617
            QA +I G+TPAA++LLL+ +K+ T
Sbjct: 580 GQARRIPGLTPAAVSLLLVALKRGT 604


>gi|322700186|gb|EFY91942.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Metarhizium acridum CQMa 102]
          Length = 689

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/629 (44%), Positives = 390/629 (62%), Gaps = 17/629 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R +DVIVIGGGHAG EA A AA+ GA TAL+T K    G+ SCNP+ GG+GKG ++REI
Sbjct: 54  TRPFDVIVIGGGHAGAEACAAAARTGAKTALVTPKIDNFGTCSCNPSFGGIGKGTIIREI 113

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDGL GR+ D AG+QF +LN  KGPAV GPR Q DR+LY+  M+ E+ S  NL ++  
Sbjct: 114 DALDGLAGRIIDKAGVQFHMLNRSKGPAVWGPRAQIDRKLYKQYMREELQSYPNLSIVLA 173

Query: 123 EVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            V+     K            ++ + +    ++  S V++TTGTFL G IHIG    PAG
Sbjct: 174 SVSDIILSKLDPPQAEAASKCVAGVRLDSGQVLPSSKVIITTGTFLGGEIHIGLQSYPAG 233

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G++ +  L  S     F  GRLKTGTP RLD KTI +   E Q+ D    PFSF+ + 
Sbjct: 234 RLGEAATFGLSKSLRTAGFQLGRLKTGTPPRLDQKTIDFKGLEVQYGDAPPTPFSFLNNA 293

Query: 233 IT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           ++   Q+ C IT T   THRI+ EN++++      IK  GPRYCPS+E K++RF ++  H
Sbjct: 294 VSVADQLTCSITHTTDATHRIVRENLQNTVHIRETIK--GPRYCPSLESKVLRFPDKERH 351

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPEG  + +VYPNG+S  +P E Q Q +RTI GLE+V +++PGY +EYDYI+P+ L
Sbjct: 352 IVWLEPEGFESQIVYPNGLSMTIPPEAQKQALRTIKGLERVEMLQPGYGVEYDYIDPRGL 411

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLET+ + GL+LAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR+D YIG+M
Sbjct: 412 KSTLETRALHGLYLAGQINGTTGYEEAAGQGVIAGINAGRVAQGLSEVSISRSDGYIGIM 471

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDL +KGV EPYRMFTSR+E+R++ R DNAD RLT  G   G + + R + F+   Q+ 
Sbjct: 472 IDDLITKGVTEPYRMFTSRSEFRMAARADNADLRLTEKGRDWGVVSDSRWRAFSDERQQI 531

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARK 527
           + L  +L S+ LTS   S      K++   RT  + L   +      +Q L +  P+   
Sbjct: 532 DDLTKILNSVSLTSTQWSEQGFHLKKNSSRRTGIDILRLSNTGNKIDLQQLSTSIPEIES 591

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           + + V +R+ IE+ YA Y   Q  E     ++E   +P D +Y  +P L+   KE L   
Sbjct: 592 YPTRVRDRVAIEAVYAPYIRMQAAERGRFAYDESVRLPLDINYDVIPGLALSEKEVLKAA 651

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            P  L QA ++EG+TPA    LL +I++ 
Sbjct: 652 CPETLAQARRVEGVTPAGTVRLLAHIRQR 680


>gi|229368699|gb|ACQ62984.1| mitochondrial translation optimization 1 homolog isoform b
           (predicted) [Dasypus novemcinctus]
          Length = 675

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/616 (43%), Positives = 383/616 (62%), Gaps = 25/616 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +GI ++VLN 
Sbjct: 54  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGIHYKVLNR 113

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V              K  +S +
Sbjct: 114 RKGPAVWGLRAQIDRKLYKYNMQKEILSTPLLTVQEGAVEDLILTEPEPEHPGKCRVSGV 173

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S I   +V+LTTGTFLRG++ IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 174 VLMDGSTIYAGSVILTTGTFLRGMVIIGLEMHPAGRLGDQPSIGLAQTLEKLGFVVGRLK 233

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  ++I +    KQ  D   +PFSF+ + +      Q+ C +T TN    +I++
Sbjct: 234 TGTPPRIAKESINFSILCKQTPDNPSVPFSFINEAVWIKPEDQLPCYLTHTNPTVDKIVL 293

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 294 ENLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-VHQVWLEPEGIDSDLIYPQGLSVTL 350

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I +I GLEK  +I PGY ++YDY++P+++ P LET  +  LF AGQINGTTG
Sbjct: 351 PAELQEKMITSIRGLEKAKLIHPGYGVQYDYVDPRQISPFLETHLVQRLFFAGQINGTTG 410

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 411 YEEAAAQGVIAGINASLRVSRKPPFVISRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 470

Query: 435 ISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNAD RLT    K  GC+ ++R +R +          S+LKS+   S        
Sbjct: 471 LSLRPDNADCRLTHRAYKDAGCVSQQRYERASWMKSSLEEGISVLKSIEFMSSKWKKLIP 530

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYT 546
             SIS  +     +A + L Y +  ++ L    P+  +K++    + ERL+IE++Y    
Sbjct: 531 EASISMGKSLPL-SALDVLKYEEVDMELLAKAVPEPLKKYTECRELAERLKIEATYELAL 589

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E ++++ +E   +P++ DY +L   +LS+E +EKL   +P  +  AS+I G+TPA
Sbjct: 590 FHQQQEIEDVQRDEALRLPENLDYLTLKDVSLSHEAREKLHFSRPQTIGAASRIPGVTPA 649

Query: 605 ALNLLLIYIKKNTVKL 620
           A+  LL ++K    + 
Sbjct: 650 AIVNLLRFVKTTQQRQ 665


>gi|310793204|gb|EFQ28665.1| glucose inhibited division protein A [Glomerella graminicola
           M1.001]
          Length = 690

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/596 (43%), Positives = 364/596 (61%), Gaps = 12/596 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   +G+ SCNP+ GG+GKG ++REIDALDGL GRV D AG+QFRVLN  KGPAV 
Sbjct: 70  LVTPKIENLGTCSCNPSFGGVGKGIILREIDALDGLAGRVIDKAGVQFRVLNRAKGPAVW 129

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE---------KNIISSIVMQDNS 143
           GPR Q DR+LY+  M+ E+ +  NL ++ G V+   T           + I+ + ++   
Sbjct: 130 GPRAQIDRKLYQKHMREELETYPNLSIVLGSVSDIVTSANPDTTGSAPSKITGVRLESGE 189

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           ++  S V++TTGTFL   IHIG    PAGR+G+  S  L  S     F  GRLKTGTP R
Sbjct: 190 VLPTSAVIITTGTFLSAEIHIGMKAYPAGRIGEDASFGLSKSLKDAGFRLGRLKTGTPPR 249

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAI 262
           +   +I +   E+Q  D   +PFSF+ +++    Q+ C ++ TN +TH I+ +N++ +  
Sbjct: 250 IAKDSIDYTHLERQPGDNPPMPFSFLNERVAVEEQMSCHVSYTNEKTHAIVRDNLEKTIH 309

Query: 263 YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
               IK  GPRYCPS+E KIVRF +++ H ++LEPEG ++D+VYPNG+S  +P E Q Q 
Sbjct: 310 IRETIK--GPRYCPSLEAKIVRFSDKDRHIVWLEPEGFDSDLVYPNGLSMTVPPEAQEQI 367

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +R+IPGLE   + + GY +EYDYI+P+ L  TLETK I+GLFLAGQINGTTGYEEAA QG
Sbjct: 368 LRSIPGLENCVMTQVGYGVEYDYIDPRSLKATLETKNIAGLFLAGQINGTTGYEEAAGQG 427

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AGIN+ R +  L     SR D YIG+MIDDL +KGV EPYRMFT+R+EYR++ R DNA
Sbjct: 428 IIAGINAGRSALGLAPAAVSRADGYIGIMIDDLITKGVTEPYRMFTTRSEYRLTSRADNA 487

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G K G + + R   F+   Q+ + L +LL S   +S          K+D   R
Sbjct: 488 DLRLTEQGRKWGVVSDERWAAFSDEKQQISDLMALLSSTSKSSPEWLKQGFQVKEDATRR 547

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
            A + L   + ++  + +  P    F   +  R+ IE++YA +  RQ+ E K    +E  
Sbjct: 548 DATDMLRLRNITMDQVAAAVPGVEAFPERIRSRVHIEATYAPFIKRQLAERKVFARDESL 607

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            +P   DY  +P L+   K  L    P  L QA ++EG+TP+    LL Y+++   
Sbjct: 608 RLPAWIDYDKVPGLAMAEKAVLKATMPETLAQARRLEGITPSGCVRLLGYVQRQQR 663


>gi|87198162|ref|YP_495419.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium aromaticivorans DSM 12444]
 gi|123491123|sp|Q2GC38|MNMG_NOVAD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|87133843|gb|ABD24585.1| glucose inhibited division protein A [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 619

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/614 (46%), Positives = 402/614 (65%), Gaps = 2/614 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+GGGHAG EAAAVAA++GA TAL++    TIG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   QQFDIIVVGGGHAGVEAAAVAARMGARTALVSFDPQTIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL+ R ADA+ I +R+LN  KG AV+GPR QADR+ ++ A+Q+ I +Q +L V+ GE
Sbjct: 62  ALDGLIARAADASAIHYRMLNRSKGSAVQGPRVQADRKRFKAAIQKMIAAQPDLHVVGGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E+  ++ + + D + +    VVL TGTFL G +  G+ ++  GR+G+  ++ L 
Sbjct: 122 VAALRLEQGRVTGVDLADGTALAGRAVVLCTGTFLGGRLFRGEERMDGGRIGEDSAHRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                 +    RLKTGTP R+DG+TI W +  +Q +D+     S +T      Q+ C I 
Sbjct: 182 AQLRDAELPMARLKTGTPPRIDGRTIDWARLPEQPSDDDPWTMSPLTPARPLPQVFCAIA 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH II   +  S +++G I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+  
Sbjct: 242 RTNARTHEIIRGGLDRSPLFTGAIGAQGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLDDF 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q   IR++ GLE+  I  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 TVYPNGVSTSLPTDVQVAMIRSMEGLEQAVITVPGYAVEYDHIDPRALRRSLEVKAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+++A            R +SY+ VMIDDLT  GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLIAGMHAAAHVLGRAMPELDRANSYMAVMIDDLTLHGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA +RLTPIG+ +GCIG+ R+K F    Q  + L + L     
Sbjct: 422 YRMLTARAEYRLRLRANNAASRLTPIGLAIGCIGDERRKWFEDRSQARSRLETALAQPA- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   I  + DG  R+  E+L +P+ ++  L         F  L++E ++ +++YA
Sbjct: 481 TPTELNRAGIPVRADGARRSLMEWLRFPEVTLDGLRD-WIGNEPFDPLLVEEVEEDAAYA 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E ++++  +   +   F ++ +P LS E+ E+L   +P +L  A +I G+TP
Sbjct: 540 PYLARQDAELRDLRASDAVPLGDGFPFADVPGLSREMVERLERAQPDSLAAAGRIAGITP 599

Query: 604 AALNLLLIYIKKNT 617
           AAL  LL++ ++  
Sbjct: 600 AALASLLVHARRRA 613


>gi|145614278|ref|XP_364007.2| hypothetical protein MGG_08852 [Magnaporthe oryzae 70-15]
 gi|145021212|gb|EDK05341.1| hypothetical protein MGG_08852 [Magnaporthe oryzae 70-15]
          Length = 1186

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/637 (43%), Positives = 391/637 (61%), Gaps = 18/637 (2%)

Query: 1    MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +  RS+DV+VIGGGHAG EA   AA+ GA TAL+T K   +G+ SCNP+IGG+GKG ++R
Sbjct: 531  LATRSFDVVVIGGGHAGAEACVAAARAGARTALVTPKMDNLGTCSCNPSIGGIGKGTMIR 590

Query: 61   EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            EIDALDGL GRV D AG+QF+VLN KKGPAV GPR Q DRELY+  M+ E+LS  NLDV+
Sbjct: 591  EIDALDGLAGRVVDKAGVQFKVLNRKKGPAVWGPRAQIDRELYKKHMREELLSYPNLDVV 650

Query: 121  QGEVAGFNTE---------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               V               K  I  + +     IR + VV+TTGTFL G IHIG    P+
Sbjct: 651  LDSVDDIIVGENPDPSTGAKGKIQGVRLASGEEIRTNQVVITTGTFLGGEIHIGLEAFPS 710

Query: 172  GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            GRMG++ +  L  S     F  GRLKTGTP RLD K+I +   ++   DE  +PFSFM D
Sbjct: 711  GRMGEAATFGLSKSLRDAGFQLGRLKTGTPPRLDKKSIDFGILQEHGGDEPPMPFSFMND 770

Query: 232  KI-TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             +    Q+ C +T TN  +H ++  N+  +      +K  GPRYCPS+E K++RF +R+ 
Sbjct: 771  SVAVKDQLLCHMTYTNQASHDVVRANLDKTIHIRETVK--GPRYCPSLEAKVIRFPQRDS 828

Query: 291  HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
            H ++LEPEG +TDV+YPNG+S  +P   Q + +RTI GLE V +++PGY +EYDY++P+ 
Sbjct: 829  HVVWLEPEGFDTDVIYPNGLSMTIPAAAQEELLRTIVGLENVKMLQPGYGVEYDYVDPRS 888

Query: 351  LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
            L  +LETK ISGLFLAGQINGTTGYEEAA QG+VAGIN+ R +  L     +R D YIG+
Sbjct: 889  LKLSLETKAISGLFLAGQINGTTGYEEAAGQGIVAGINAGRAAMGLPAATLTRADGYIGI 948

Query: 411  MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            MIDDL +KGV EPYRMFTSR+E+R+S R DNAD+RLT  G   G + + R   F    ++
Sbjct: 949  MIDDLVTKGVSEPYRMFTSRSEFRMSTRADNADSRLTARGRAWGVVSDSRWASFESEREQ 1008

Query: 471  YNFLRSLLKSLVLTSKNLSSTSI-SFKQDGKTRTAYEFLSYPDFSIQN----LFSICPDA 525
               L  +L S+   +++       S +         + +      I +    L    P+ 
Sbjct: 1009 IAELTEVLASVAQGAESWQRDGFQSVRSSSSPINGLDIVRR-GVDIASDNGVLAKKFPNL 1067

Query: 526  RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
             K+   + ER+ +E++YA Y  + +        +E  ++P D DY ++  +S   ++ L 
Sbjct: 1068 HKYPRRIRERVAVEAAYAPYVEKDVRIRDRALRDEGLILPPDIDYDTVSGISIAERQALM 1127

Query: 586  ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
             ++P  + Q  ++EGMTPA    LL+Y+++N  + +E
Sbjct: 1128 AIRPETMGQVKRLEGMTPAGAFNLLLYLRRNHGQKSE 1164


>gi|257457426|ref|ZP_05622596.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema vincentii ATCC 35580]
 gi|257445155|gb|EEV20228.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema vincentii ATCC 35580]
          Length = 639

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/632 (40%), Positives = 366/632 (57%), Gaps = 24/632 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EA+  AA+LGA T LIT    TIG MSCNP+IGG+ KG++VREIDA
Sbjct: 10  DYDVIVVGGGHAGIEASLAAARLGAHTLLITQTVDTIGRMSCNPSIGGVSKGNIVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG++ADA  IQ+R+LN  +GPAV+ PR QAD+ LY    Q  +  ++NL + Q  V
Sbjct: 70  LGGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQTAQYTLEKEKNLHIYQDTV 129

Query: 125 AGFN---------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                         E   + +++      I    VVLTTGTF+ G I+IG+ +   GR+G
Sbjct: 130 VDVISSQTAESGVVENGSVQAVLTARGRTISARAVVLTTGTFMEGKIYIGEFEAEEGRLG 189

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  +  F  GRLKTGTP R+  K++     E Q AD  + PFSF T +I  
Sbjct: 190 EKAAIGLGTALARKGFTMGRLKTGTPCRVLRKSVDLSVLEIQEADAVMRPFSFDTAEIFR 249

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
               C +  TN  TH +I +N   S ++SG I + G RYCPSIEDK+ +F ER  HQ+++
Sbjct: 250 PSAVCYVCYTNEHTHEVIRQNFHRSPLFSGKIHATGARYCPSIEDKVRKFPERTRHQLYI 309

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL +D +Y NG S++LPE++Q Q +RT+ G     I RP YA++Y  I+P +L P L
Sbjct: 310 EPEGLMSDELYINGFSSSLPEDVQDQMLRTLTGFADAVITRPAYAVDYAVISPLQLGPDL 369

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL-------------DCICFS 402
           +T++I+GLF AGQINGT+GYEEA  QGL+AGIN+A  S                +     
Sbjct: 370 QTRRIAGLFTAGQINGTSGYEEAGGQGLIAGINAALYSRACSTQPQPGTRPAAYEPFTLR 429

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R ++YIGVMIDDL ++GV EPYRMFT+RAEYR+ LR D AD RLT    ++G   +    
Sbjct: 430 RDEAYIGVMIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTERAFRIGLQKQSSFT 489

Query: 463 RFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
           R  + + +   L    +   +T     +        GK+    + L  P  S++ +    
Sbjct: 490 RLQEKLAQRGELIEHWRERKITGSLAEAEPALQCHLGKSF--ADALHDPLISLELICRCD 547

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
           P++ ++S  +    ++E  Y  Y   Q     ++K  E   IP +F+Y ++  LS E   
Sbjct: 548 PESTRYSDAIKTAAELEIRYEHYIIAQDKRIDKMKKMETSRIPANFNYDAVSGLSTESLA 607

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +L  + P  + QAS+I G+ P+ + +L++ IK
Sbjct: 608 RLKKVMPATIGQASRIPGIRPSDIMVLMVAIK 639


>gi|169867302|ref|XP_001840232.1| mitochondrial translation optimization protein [Coprinopsis cinerea
           okayama7#130]
 gi|116498784|gb|EAU81679.1| mitochondrial translation optimization protein [Coprinopsis cinerea
           okayama7#130]
          Length = 669

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/612 (47%), Positives = 379/612 (61%), Gaps = 36/612 (5%)

Query: 32  ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            L+T K  TIG +SCNP+IGG+GKG LVREIDALDG+MGRVAD AGIQF+VLN  KG AV
Sbjct: 50  VLLTQKLETIGELSCNPSIGGVGKGTLVREIDALDGVMGRVADKAGIQFQVLNRSKGAAV 109

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-------IISSIVMQD--- 141
            GPRTQ DR LY+  MQ+ + +  NLD+  G V     E++        +  + +     
Sbjct: 110 WGPRTQIDRTLYKQNMQKILHNYPNLDIKAGSVFDLIIERSHTDAGWGRVQGVQLGMWLL 169

Query: 142 ----------------NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                             +I CS VV+ TGTFL G IH+G  +IPAGR+GD+PS  L  S
Sbjct: 170 NVTDKCQLTDNPALDSGEIISCSQVVICTGTFLSGEIHMGLKRIPAGRIGDAPSVGLSAS 229

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGIT 243
                F  GRL+TGTPARLDGKTI ++  E+Q  D   +PFS+M  K+ N  RQI C  T
Sbjct: 230 LASAGFKLGRLQTGTPARLDGKTINFEGLERQEGDAEPLPFSYMNSKLDNADRQITCFKT 289

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH+I+ +N+          K  GPRYCPS+E KI+RFG+++ H ++LEPEG ++D
Sbjct: 290 YTNPSTHQIVKDNLHQCVHIQETKK--GPRYCPSLEAKILRFGDKDHHTVWLEPEGYDSD 347

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           V+YPNGIS +LPEE+Q   +RTIPGLEKV I+RP Y +EYDYI+P+EL PTLETK+I GL
Sbjct: 348 VIYPNGISCSLPEELQEPMMRTIPGLEKVKIVRPAYGVEYDYIDPRELNPTLETKRIKGL 407

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAGIN+   + +   +  +R D + GVMIDDLT KG  EP
Sbjct: 408 FLAGQINGTTGYEEAAAQGIVAGINAGLSALQKPPMILTRADGFTGVMIDDLTVKGAEEP 467

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSR+EYR+++R DNAD RLT  G K G + + R  +F       N +  LLKS+  
Sbjct: 468 YRMFTSRSEYRMTIRSDNADLRLTTKGRKAGVVSDPRWVKFQDTQATINSVIDLLKSIKF 527

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           + +  S   I   +DG  R AY  L YP  +   + S  P+       V+ R+ IE  Y 
Sbjct: 528 SPQGWSERGIQVNRDGAWRDAYYMLRYPGVTAGFMKSFIPELADVDPQVLARVDIEGHYH 587

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  + K    +E  L+    +Y  +P LS+E+ EKL          A +IEGMTP
Sbjct: 588 PHLSRQEADVKMFMEDESLLLDPRMEYREVPGLSSEVVEKLYR------GAAKRIEGMTP 641

Query: 604 AALNLLLIYIKK 615
            ++  LL Y K+
Sbjct: 642 TSVVYLLKYAKR 653


>gi|146418878|ref|XP_001485404.1| hypothetical protein PGUG_03133 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 703

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/643 (41%), Positives = 395/643 (61%), Gaps = 30/643 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAGCEAA  +A+ G  T LIT   S IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 57  VVVIGGGHAGCEAATGSARSGTPTTLITPDISKIGTASCNPSMGGVGKGTLLREVDALDG 116

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  ++ D AGI F++LN  KG AV GPR Q DR +Y   MQ+ IL+  NL V++ EV   
Sbjct: 117 VALKITDKAGIHFKILNASKGAAVHGPRAQIDRSIYLKEMQKTILNYPNLTVLEAEVKDI 176

Query: 128 NTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             E                I  +V+ D+ ++ CS VV+TTGTFL   IHIG    PAGRM
Sbjct: 177 IIEDVETNSSDFTGRKYGSIVGVVLGDSRVLSCSKVVVTTGTFLSAEIHIGLESFPAGRM 236

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI- 233
           G++ +  L  +F +  F  GRLKTGTP RL  +TI ++   +Q +D    P S+M+ K+ 
Sbjct: 237 GENATFGLSKTFKEAGFRLGRLKTGTPPRLSSRTIRYEGLSEQKSDYPPAPMSYMSLKVD 296

Query: 234 -TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++ + C IT T  E H++I +N+  S      +K  GPRYCPSIE KI++F ++  H 
Sbjct: 297 LQDQLVSCHITFTTAEMHKLIADNLDKSIHIKETVK--GPRYCPSIESKIIKFPQKTSHM 354

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL+TD+VYPNGIS  +P E+Q + ++ +PG E V +++PGY +EYD+++P+EL 
Sbjct: 355 VWLEPEGLDTDLVYPNGISCTMPHELQEKLVKLMPGCEDVKMVQPGYGVEYDFVDPRELR 414

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+         +   R+D Y+GV++
Sbjct: 415 QTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLSLAGKPPLIVQRSDGYLGVLV 474

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R K +   +  ++
Sbjct: 475 DDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLTEKGYLAGVVSEERYKHYKNEMNNFD 534

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFS--------I 521
            ++S L+S+ L+    +      + D         ++ LSY D  ++ L          +
Sbjct: 535 AIKSFLQSVSLSGARWAPALKGTELDVNRTAVVDGWKLLSYRDVDLELLMKSLPQIVGDL 594

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNE 579
            P     +  ++ R+ +ES+Y  +  ++    +  K +E  L+PK+F Y++   L  S E
Sbjct: 595 PPVFDSINPRLLNRIDVESTYEPWMKKEEAHLRAYKADENLLLPKNFVYNNEGNLKISYE 654

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           +   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L +
Sbjct: 655 VCHLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQSQLAQ 697


>gi|205375717|sp|B1ZWP4|MNMG_OPITP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 634

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/634 (38%), Positives = 346/634 (54%), Gaps = 39/634 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +DVIV G GHAG EA+  AA++GA T L+T    T+G MSCNPAIGG  KG +VREI
Sbjct: 5   SEPFDVIVCGAGHAGIEASLAAARVGAFTLLLTGNLDTVGQMSCNPAIGGQAKGQIVREI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G M    D  GIQFR+LN  KGPAV+ PR Q D++ Y+  ++  +  Q +L + Q 
Sbjct: 65  DALGGEMAINTDVTGIQFRLLNHTKGPAVQSPRAQCDKKAYQFRLKHTLELQPHLQLFQA 124

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V G   +   +       +      TVV+TTGTFLRG++HIG  K   GR+GD  + +L
Sbjct: 125 TVTGLIFDGAKVIGCRTNLDIEFYGRTVVVTTGTFLRGLMHIGSNKNEGGRLGDFSARTL 184

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN------- 235
             S  +   +  R KTGTP RL G+++ + K E+Q  D     F+F   +          
Sbjct: 185 SGSLQEAGIELRRFKTGTPPRLLGRSLDFSKMEEQKGDANPTFFAFHDTREDGGVFHVEH 244

Query: 236 ------------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
                        Q+ C +T T   T  ++ EN+  SA+Y G+I+  GPRYCPSIEDK V
Sbjct: 245 GKPQGEAIPPGCEQVSCWMTYTTARTAELVRENLSRSAMYGGEIEGVGPRYCPSIEDKFV 304

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF ++  H +FLEPEG  TD  Y NG+ST+LP ++Q + + +IPGL +  ++RP YA+EY
Sbjct: 305 RFADKPRHLLFLEPEGRGTDEFYVNGLSTSLPFDVQLELVHSIPGLGEAVLLRPAYAVEY 364

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY  P +L  +LE++++ GLFLAGQINGT+GYEEAA QGL+AG+N+ARK      +   R
Sbjct: 365 DYAPPTQLKMSLESQRVEGLFLAGQINGTSGYEEAAGQGLIAGVNAARKGRGEQPLVLGR 424

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            ++YIGV+IDDL +KG  EPYRMFTSRAE+R+ L   +A+ RL         +   R   
Sbjct: 425 HEAYIGVLIDDLVTKGTEEPYRMFTSRAEHRLLLNHGSAELRLLHHASGCKLLNVNRLDN 484

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
            A+  +        L+S                      T  E +   +        +  
Sbjct: 485 IARKKEAIESWVRRLESER----------------TSEGTLAEIIRRQNAR----AELPS 524

Query: 524 DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
           +  + S  V + +     Y+ Y  R+     ++   E   IP   DY  +P L  E   K
Sbjct: 525 ELMRQSKPVRDEVLYRVLYSGYWEREQRHIDKLAQIEAVRIPAAIDYLRIPGLRRESALK 584

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           L+  +P  L QAS+I G+ PA +++L++ IK   
Sbjct: 585 LAAQRPDTLGQASRISGVNPADVSILMVLIKTGK 618


>gi|198426865|ref|XP_002123127.1| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform b (predicted) [Ciona intestinalis]
          Length = 652

 Score =  653 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/629 (44%), Positives = 396/629 (62%), Gaps = 21/629 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVI++GGGHAGCEAA+ +A++GA T L+THK STIG MSCNP+ GG+GKGHL+REID
Sbjct: 15  NSYDVIIVGGGHAGCEAASASARVGARTLLLTHKLSTIGEMSCNPSFGGIGKGHLIREID 74

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ GR+ D +GIQ+R+LN KKGPAV GPR Q DR LYR  MQ EI +  NLDV++G 
Sbjct: 75  ALDGICGRICDISGIQYRMLNRKKGPAVWGPRAQIDRNLYRENMQTEIHNTINLDVMEGS 134

Query: 124 VAGFNTE---------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V    T          K   + +++ D +M+    VVLT GTFLRG I+IG +   AGR+
Sbjct: 135 VEDLVTTDVVEATPETKCRCNGVILSDGTMLHAKGVVLTAGTFLRGQINIGMIVKGAGRI 194

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           GD+P+  L  +     F+ GRLKTGTP R+   ++ +        D    PFSF  +K+ 
Sbjct: 195 GDAPAVGLARTIENLGFEMGRLKTGTPPRIAKDSVNFSGMVAYGGDMPPHPFSFENEKVW 254

Query: 235 ---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              ++Q+ C  T T  E  + I++ +  +     ++   GPRYCPSIE K+++F E+  H
Sbjct: 255 IDPDQQLTCYTTHTKPELEKCILDTLHMNKHVIEEVN--GPRYCPSIESKVLKFKEK-SH 311

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
             +LEPEGL ++V+Y  G S  +PEE Q + +R I GLE   I RPGY +EYDY++P+++
Sbjct: 312 MCWLEPEGLTSNVIYLQGFSCTMPEENQTEAVRMIQGLENAEITRPGYGVEYDYMDPRQV 371

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TLET K+ GL+ AGQINGTTGYEEAAAQGL+AG+N+ARK+ KL     +R++ YIGV+
Sbjct: 372 STTLETYKVKGLYFAGQINGTTGYEEAAAQGLIAGVNAARKAKKLSPFIVTRSEGYIGVL 431

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQE 470
           +DDLT+ G  EPYRMFTSR E+R++LRPD AD RLT  G  + GC+ E+R     K +  
Sbjct: 432 LDDLTTMGTNEPYRMFTSRTEFRMTLRPDTADERLTEKGFIEGGCVSEKRMNNTKKRVNL 491

Query: 471 YNFLRSLLKSLVLT-SKNLSSTSISFKQDGKTRTAYEFLS--YPDFSIQNLFSICPDARK 527
                 +LKS+    +K L  T         +  A+ FL+       +  + S+ P+ R 
Sbjct: 492 LTEAVDVLKSVKKPKNKWLELTGGKPVNLSHSTNAFHFLADVRGPREVDVVLSMFPETRA 551

Query: 528 F--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              ++ +  RL   + Y+A    +    + +K EE+ +IP   DY ++P L  E++EKL+
Sbjct: 552 IMENTWLRNRLLSSAVYSALLPVEQKNIEMVKREERLIIPDHIDYVNMPGLKLEIREKLA 611

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
             +P N+  AS+I+G+TPA+L  LL ++K
Sbjct: 612 KARPGNIAAASRIQGVTPASLVQLLKHVK 640


>gi|157820343|ref|NP_001100311.1| protein MTO1 homolog, mitochondrial [Rattus norvegicus]
 gi|149019088|gb|EDL77729.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           (predicted) [Rattus norvegicus]
          Length = 679

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/620 (42%), Positives = 387/620 (62%), Gaps = 25/620 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  RV D +GI ++VLN 
Sbjct: 56  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGIHYKVLNR 115

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V              K+ +  +
Sbjct: 116 RKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQEGAVEDLVLAEPEPGYGGKSRVRGV 175

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +VVLTTGTFLRG + IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 176 VLADGSTMHAESVVLTTGTFLRGALIIGLEVHPAGRLGDQPSIGLAQTLEKLGFMVGRLK 235

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP RL  ++I +    +  AD   IPFSF++D +      Q+ C +T TN     +++
Sbjct: 236 TGTPPRLAKESINFSILHEHTADNPPIPFSFLSDDVWIKPEDQLPCYLTHTNPRVDELVL 295

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 296 ENLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 352

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 353 PAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTG 412

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 413 YEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 472

Query: 435 ISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS--- 490
           +SLRPDNAD RLT    +  GC+  +R KR            S+LKS+  +S        
Sbjct: 473 LSLRPDNADTRLTFRAHEDAGCVSPQRYKRALWMKSSLEEGISVLKSIKFSSSKWKKLIP 532

Query: 491 -TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
              IS  +     +A + L Y +  +++L S+ P+  +K++    +  RL+IE++Y +  
Sbjct: 533 QAPISINRSLP-VSALDVLKYEEVDMESLASVVPEPLKKYTACRELARRLKIEATYESVL 591

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E KE++ +E   +P+D DY ++   +LS E++EKL + +P  +  AS+I G+TPA
Sbjct: 592 LYQLQEIKEVQQDEALQLPQDLDYLTIKDVSLSQEVREKLHLSRPQTIGAASRIPGVTPA 651

Query: 605 ALNLLLIYIKKNTVKLNEIV 624
           A+  LL +++    +   ++
Sbjct: 652 AIINLLRFVRNTQQRQTAVM 671


>gi|330040419|ref|XP_003239903.1| glucose inhibited division protein A [Cryptomonas paramecium]
 gi|327206829|gb|AEA39005.1| glucose inhibited division protein A [Cryptomonas paramecium]
          Length = 647

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/618 (39%), Positives = 354/618 (57%), Gaps = 7/618 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVI+IGGGHAGCEAA      G ST L T     I    CNP+IGG  K  LV EI
Sbjct: 30  KQEYDVIIIGGGHAGCEAALSCCSQGVSTLLFTLNLDKIAWQPCNPSIGGPAKSILVHEI 89

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG++ D + I  ++LN  KGPAV   R Q D+  Y   M++ +    NL + + 
Sbjct: 90  DALGGWMGKITDRSYIHKKILNTSKGPAVWSLRAQTDKREYSEEMKKVLNETSNLTISEE 149

Query: 123 EVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V+    T++  I  +      +  C ++V+TTGTF++G I +G  K  AGR+G+  S +
Sbjct: 150 MVSDIILTKEEKIKGVKTFFGGLFECKSIVITTGTFMKGTIWVGSKKFAAGRIGEMASFA 209

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           L +S  K  FD  RLKTGTP R+D + I +   EKQ +D     FSF  ++  +   + C
Sbjct: 210 LSDSLKKLKFDINRLKTGTPPRIDSRYINFKVMEKQNSDIMENWFSFDKSEWNSRHTLSC 269

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I+ T LET  +I  N+  S  Y G ++S GPRYCPSIEDK+VRF ++  HQ+FLEPEG 
Sbjct: 270 YISHTTLETLSVIRSNLHLSPKYGGFMRSTGPRYCPSIEDKVVRFDQKKEHQVFLEPEGK 329

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT+ +Y  G+ST LPE +Q   I+TIPGLE   IIRP Y+++YDYI   +L  TL +  I
Sbjct: 330 NTNEIYIQGMSTGLPENLQKNIIKTIPGLEYSKIIRPAYSVDYDYIPATQLDKTLMS-DI 388

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLF AGQI GTTGYEEAAAQG VAG+N+A  S +   +   R  S+IG+++DDL +K +
Sbjct: 389 SGLFFAGQICGTTGYEEAAAQGWVAGLNAALYSLQNSLLSLRRESSFIGLLVDDLCTKKL 448

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TS++E+R+ LR DNAD RLTP+G K G + ER+ K F    +        + +
Sbjct: 449 KEPYRVLTSKSEHRLLLRGDNADFRLTPLGKKYGTVSERKWKSFEHKYENIQKEIIRVDN 508

Query: 481 LVLTSKNLSSTSISFKQDG----KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            ++        +   KQ      K       L  P  S + L +        ++   ++L
Sbjct: 509 ALIEKNLQQRLTFVEKQTTTSCAKNCCVLNLLDQPFSSYKTLENFRLHNFNLNASEKKQL 568

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE  Y+ Y  RQ  +   ++      I K+ ++  +  +S E +EKL+  +P  L +A 
Sbjct: 569 EIEIKYSVYIERQETQINALEEALDTKIQKNLNFMKIFQISKEAREKLAKKRPSTLREAC 628

Query: 597 KIEGMTPAALNLLLIYIK 614
           ++ G++   +  LL+Y+K
Sbjct: 629 QLGGVSLPDIQTLLVYVK 646


>gi|322711940|gb|EFZ03513.1| vacuolar protein sorting-associated protein 45 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1151

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/631 (45%), Positives = 396/631 (62%), Gaps = 19/631 (3%)

Query: 3    NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             R +DVIVIGGGHAG EA A AA+ GA TAL+T K   IG+ SCNP+ GG+GKG ++REI
Sbjct: 518  TRPFDVIVIGGGHAGAEACAAAARTGAKTALVTPKIDNIGTCSCNPSFGGIGKGTIIREI 577

Query: 63   DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            DALDGL G++ D AG+QF +LN  KGPA  GPR Q DR+LY+  M+ E+ S  NL ++  
Sbjct: 578  DALDGLAGKIIDKAGVQFHMLNRSKGPA--GPRAQIDRKLYKQYMREELESYPNLSIVLA 635

Query: 123  EVAGFNTEK----------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             V+     K            I+ + +    ++  + V++TTGTFL G IHIG    PAG
Sbjct: 636  SVSDIILSKLDPPQALGASKSIAGVRLDSGQVLPSNKVIITTGTFLGGEIHIGLQSYPAG 695

Query: 173  RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            R+G++ +  L  S     F  GRLKTGTP RLD KTI + + E Q+ D    PFSF+ + 
Sbjct: 696  RLGEAATFGLSKSLRTAGFQLGRLKTGTPPRLDQKTIDFKELEVQYGDTPPTPFSFLNNA 755

Query: 233  IT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            ++   Q+ C IT T   THRI+ EN++++      IK  GPRYCPS+E K++RF ++  H
Sbjct: 756  VSVADQLTCSITHTTDATHRIVRENLQNTVHIRETIK--GPRYCPSLESKVLRFPDKERH 813

Query: 292  QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
             ++LEPEG  + +VYPNG+S  +P E Q Q +RTI GLE+V +++PGY +EYDYI+P+ L
Sbjct: 814  IVWLEPEGFESQIVYPNGLSMTIPPEAQKQALRTIKGLERVEMLQPGYGVEYDYIDPRGL 873

Query: 352  FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              TLET+ I GL+LAGQINGTTGYEEAA QG++AGIN+ R +  L  +  SR+D YIG+M
Sbjct: 874  KSTLETRAIHGLYLAGQINGTTGYEEAAGQGVMAGINAGRVAQGLSEVSISRSDGYIGIM 933

Query: 412  IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
            IDDL +KGV EPYRMFTSR+E+R++ R DNAD RLT  G   G + + R K F+   Q+ 
Sbjct: 934  IDDLITKGVTEPYRMFTSRSEFRMAARADNADLRLTEKGRDWGVVSDSRWKAFSDERQQI 993

Query: 472  NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARK 527
            + L  +L S+ LTS   S      K++   RT  + L   +      +Q L +  P+ + 
Sbjct: 994  DDLTKILNSVSLTSTQWSEQGWHLKKNSPRRTGIDILRLSNTGTRVDLQQLSTSIPEIKS 1053

Query: 528  FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +S+ V +R+ IE+ YA Y   Q  E     ++E   +P D +Y ++P L+   KE L   
Sbjct: 1054 YSTRVRDRVAIEAVYAPYVRMQAAERGRFAYDESVRLPLDINYDAIPGLALSEKELLKAA 1113

Query: 588  KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             P  L QA ++EG+TPA    LL +I++ ++
Sbjct: 1114 CPETLAQARRVEGVTPAGTVRLLAHIRQRSL 1144


>gi|126310383|ref|XP_001373515.1| PREDICTED: similar to MTO1 protein [Monodelphis domestica]
          Length = 689

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/619 (43%), Positives = 385/619 (62%), Gaps = 25/619 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  +IG MSCNP+ GG+GKGHL+RE+DALDGL  RV D +GI ++VLN 
Sbjct: 54  RCGSRTLLLTHRVDSIGQMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGIHYKVLNR 113

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ EIL+   L V +  V              K  +S +
Sbjct: 114 RKGPAVWGLRAQIDRKLYKQKMQEEILTIPLLTVQESSVEDLLLMEPDLDHPGKCCVSGV 173

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V++D S +   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 174 VLEDGSRVYAESVILTTGTFLRGMILIGLESYPAGRLGDRPSIGLAQTLEKLGFVVGRLK 233

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+   +I +    KQ  D   +PFSF+ + +      Q+ C +T TN    +I+ 
Sbjct: 234 TGTPPRIARDSINFSILNKQMPDNPSVPFSFLNEAVWIKPEDQLPCYLTHTNSRVDQIVK 293

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           ENI  +       K  GPRYCPSIE K++RF  R  HQ++LEPEG++++++YP G+S  L
Sbjct: 294 ENIHLNTHIKETTK--GPRYCPSIESKVLRFPNR-IHQVWLEPEGMDSNLIYPQGLSMTL 350

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P  +Q Q I +I GLEK  I++PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 351 PPNVQEQLITSIRGLEKAKIVQPGYGVQYDYLDPRQITPSLETLLVQRLFFAGQINGTTG 410

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + N       SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 411 YEEAAAQGIIAGINASLRVNGKPPFIVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 470

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT----SKNLS 489
           +SLRPDNAD+RLT  G  + GC+ ++R  R +          S+LKSL  +     K + 
Sbjct: 471 LSLRPDNADSRLTLRGYKETGCVSQQRYNRASLMKSSLEEGISVLKSLQFSGYKWKKLIP 530

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYT 546
              +S  +    ++A + L Y +  +  L  + P+  +KF+    ++ RL+IE++Y    
Sbjct: 531 EAPVSIYKSDP-QSALDMLKYEEVDMTVLAKVLPEPLKKFAECQELMNRLKIEATYELSL 589

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E +E++ +E   +P+D DY ++   +LSNE++EKL   +P  +  AS+I GMTPA
Sbjct: 590 ILQQQEIEEVQRDEALQLPEDLDYLTIRDVSLSNEVREKLHSSRPQTIGAASRIPGMTPA 649

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           A+  LL ++K    K   +
Sbjct: 650 AILNLLRFVKTTQQKEESV 668


>gi|34541585|ref|NP_906064.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas gingivalis W83]
 gi|81170568|sp|Q7MTG9|MNMG_PORGI RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|34397902|gb|AAQ66963.1| glucose-inhibited division protein A [Porphyromonas gingivalis W83]
          Length = 625

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/625 (42%), Positives = 366/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AAKLG+   LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MQFNYDVIVVGAGHAGCEAAAAAAKLGSQVLLITPDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G MG V DA  IQFR+LN  KGPA+  PR Q+DR  +  A +  +  + NL + Q
Sbjct: 61  IDALGGRMGIVTDATAIQFRMLNRSKGPAMWSPRAQSDRMRFMEAWRDIVEHEPNLYMWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V   +  +  ++ +V       +  TVVLTTGTFL GV+H G+  I  GR+ +   + 
Sbjct: 121 DSVRCLSIRQGAVAGVVTALGVEFQARTVVLTTGTFLGGVMHFGERMIEGGRIAEPAFHG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           +        F T R+KTGTPAR+DG++I +  T +Q  +E    FS+M T +   RQ  C
Sbjct: 181 ITEQLRDLGFRTDRMKTGTPARIDGRSIDFSLTTEQSGEEDHHRFSYMDTPRRVLRQRSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H I+ + +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 YALYTNPECHEILSKGLDRSPLYNGQIQSIGPRYCPSIETKIVTFADKEMHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++  Y NG S++LP EIQ + ++ IP L  V+I RPGYAIEYD+ +P +L  TLETK +
Sbjct: 301 TSNEFYLNGFSSSLPLEIQLEALKAIPALRHVHIYRPGYAIEYDFFDPTQLRHTLETKPV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA QGL+AGIN+    +        R ++YIGV+IDDL SKGV
Sbjct: 361 KGLFFAGQINGTTGYEEAAGQGLIAGINAHLHCHGAGEFTLGRDEAYIGVLIDDLVSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLTP    +G    RR +   +     + L      
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTPKAEAIGLADSRRSELLREKQVFRDKLIDFTHK 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
             L    ++    S       +    Y+ L  P   +  + S+ P  ++           
Sbjct: 481 FSLKPDLINPHLESAGHLPLKQGIKLYDLLLRPQIGMNEVCSMVPSLQRIVEEIPASRRE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y  R+   A +I   E   +P+  DY  + +LS E ++KL+ ++P 
Sbjct: 541 EIVEAAEILIKYDGYIKRERALADKINRLESIRLPQHVDYMQMQSLSTEARQKLTSIRPE 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P  +++LL+   +
Sbjct: 601 TIAQASRIPGVSPHDVSILLVLCGR 625


>gi|73973765|ref|XP_532202.2| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform IV [Canis familiaris]
          Length = 672

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/616 (44%), Positives = 388/616 (62%), Gaps = 25/616 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN 
Sbjct: 57  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNR 116

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V            T K  +S +
Sbjct: 117 RKGPAVWGLRAQIDRKLYKRNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGV 176

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 177 VLADGSTVHAESVVLTTGTFLRGVIVIGLEMHPAGRLGDQPSVGLAQTLEKLGFVVGRLK 236

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  +++ +    KQ  D   IPFSF+++ +      Q+ C +T TN     I++
Sbjct: 237 TGTPPRIAKESVNFSILNKQTPDNPSIPFSFVSETVWIKPEDQLPCYLTHTNPRVDEIVL 296

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG++++++YP G+S  L
Sbjct: 297 ENLHLNSHIKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSELIYPQGLSVTL 353

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 354 PAELQEKMITCIKGLEKAKMIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTG 413

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +         SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 414 YEEAAAQGVIAGINASLRVKHKPPFVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFR 473

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNAD+RLT  G  ++GC+ ++R +R +          S+LKS+  +S        
Sbjct: 474 LSLRPDNADSRLTFRGYKEVGCVSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIP 533

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK---FSSLVIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  ++ L    P+  K    S  + ERL+IE++Y +  
Sbjct: 534 EASISIVKSLPLR-ALDVLKYEEVDMKLLAKAVPEPLKKYVESRELAERLKIEATYESVL 592

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  + KE++ +E   +PKD DY +L   +LS E++EKL  ++P  +  AS+I G+TPA
Sbjct: 593 FHQQQQIKEVQQDEALQLPKDLDYLTLRDVSLSYEVREKLHFIRPETIGAASRIPGVTPA 652

Query: 605 ALNLLLIYIKKNTVKL 620
           A+  LL ++K    K 
Sbjct: 653 AIINLLRFVKTTQQKQ 668


>gi|320167248|gb|EFW44147.1| glucose-inhibited division protein A [Capsaspora owczarzaki ATCC
           30864]
          Length = 689

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/598 (48%), Positives = 386/598 (64%), Gaps = 11/598 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T L+THK  TIG MSCNP+ GG+GKG LVREIDALDGL GRV D AG+QFRVLN  +GP
Sbjct: 71  NTLLVTHKLETIGEMSCNPSFGGIGKGTLVREIDALDGLCGRVCDEAGVQFRVLNQSRGP 130

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE----KNIISSIVMQDNSMI 145
           AV GPR Q DR+LY+  MQ  I +  NL V    V     +    +  I+ IV+ +   I
Sbjct: 131 AVWGPRAQMDRDLYKQYMQDTIFTYPNLSVKAAAVEDLLLDESPSQPQIAGIVLANGETI 190

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           +   VVLTTGTFLR  I+IG    PAGR+GD P+  L  +  +F F  GRLKTGTP RL+
Sbjct: 191 KSKAVVLTTGTFLRAQINIGLECFPAGRIGDEPAIGLGRTLERFGFALGRLKTGTPPRLE 250

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKI--TNRQIECGITRTNLETHRIIMENIKHSAIY 263
           GKTI +     Q  D   +PFSFM   +   N Q++C +T T+   H+II ENI  S   
Sbjct: 251 GKTINYSNLVPQLGDNPPLPFSFMNTTVRNANNQLKCFMTLTSTAGHKIIRENIHLSRHV 310

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             +    GPRYCPS+E KI+RF ++  HQ++LEPEG NT VVYPNGIST LP E+Q QF+
Sbjct: 311 MEET--RGPRYCPSVESKILRFTDKASHQVWLEPEGYNTTVVYPNGISTTLPRELQLQFL 368

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           RTIPGLE V ++RPGY +EYDYI+P++L  +LET+KI+ LFLAGQINGTTGYEEAA+QG+
Sbjct: 369 RTIPGLENVEMLRPGYGVEYDYIDPRQLRESLETQKINRLFLAGQINGTTGYEEAASQGI 428

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AGIN+A    +       R D Y+GV++DDL SKG  EPYRMFTSRAEYR+ LR DNAD
Sbjct: 429 LAGINAALAVAEKPAFTLDRADGYLGVLVDDLLSKGAPEPYRMFTSRAEYRLHLRSDNAD 488

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLT  G+++GC+G  R++ F    Q+   LRS L S+  + ++ ++  I    DG   +
Sbjct: 489 ARLTAKGIEVGCVGPDRKRAFETLTQQLQTLRSALNSITKSPEDWTAQGIPVAPDGTKPS 548

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
           A+E L   +F +  + ++ P   KFS+ V +R+ I++ Y     +Q  +    + EE  +
Sbjct: 549 AFEILDRANFDLDRVRAVVPSLPKFSAAVDQRITIDARYEGLLAKQASDIATYRREESTV 608

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           IP DFDY    +L  E+++ L + KP  + +AS + G TP AL LLL +IK+     +
Sbjct: 609 IPFDFDY---KSLGTEVQQTLMLHKPRTIKEASLLHGTTPTALILLLQHIKREARDRS 663


>gi|296284830|ref|ZP_06862828.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Citromicrobium bathyomarinum JL354]
          Length = 619

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/612 (45%), Positives = 383/612 (62%), Gaps = 1/612 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y +IVIGGGHAG EAA VAA++G    L+T   S IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   QHYPIIVIGGGHAGVEAACVAARMGVRVGLVTMDASKIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG++GR ADA  I +R+LN  KG AV GPR QADR+L+  A++ ++  +E LDVI GE
Sbjct: 62  AFDGVLGRAADAGAIHYRMLNRSKGSAVWGPRVQADRKLFGAAVRAQVAGEETLDVIAGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +   ++ + +   + I C   +L TGTFL GV+  G+     GR+ +  +  L 
Sbjct: 122 AAALVLDGERVAGVELAGGTRIGCEAAILCTGTFLGGVLFRGEETFVGGRVREGSAARLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +      RLKTGTP RLDG+TI W + ++Q +D  +   S ++    N QI C IT
Sbjct: 182 AQLREAALPMARLKTGTPPRLDGRTIDWSRLDEQPSDPEVWTMSPLSRGRANPQIFCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN   H II  N+  S +YSG I + GPRYCPSIEDKI RFG+R+GHQIFLEPEGL+T 
Sbjct: 242 RTNARAHEIIRANLSRSPLYSGAIGAQGPRYCPSIEDKIDRFGDRDGHQIFLEPEGLDTP 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++Q  F+R I GLE+V ++ PGYA+EYD+++P+ L   L+ + + GL
Sbjct: 302 LVYPNGISTSLPADVQEDFLRAIDGLEQVRVVEPGYAVEYDHVDPRSLDRWLQMRSLPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVAG+ +A      D     R +SYI VM+DDLT  GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLVAGLRAASSVLGRDAPALDRANSYIAVMVDDLTLHGVTEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA  RLTP+ +++GC+ E R   F         + S L     
Sbjct: 422 YRMLTARAEYRLRLRANNASTRLTPLAIEVGCVHEERGAWFEARAAARADVESALAEDH- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
               + +       D   +   ++  +P   +  L       R+    ++E +  +  YA
Sbjct: 481 GPAQMRALGFGATDDAGRQPLRDWTRFPGIDLSALQYAGLVPRETDPALLEEIGEDLHYA 540

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +E++  E+  +  DF +S +P LSNE+ E+LS  +P +L QA ++ G+TP
Sbjct: 541 PYIARQDAELRELRANEQVRLAPDFPFSQVPGLSNEMVERLSRARPDSLAQAGRVAGITP 600

Query: 604 AALNLLLIYIKK 615
           AA+  LL+Y +K
Sbjct: 601 AAMAALLVYARK 612


>gi|240047139|ref|YP_002960527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma conjunctivae HRC/581]
 gi|239984711|emb|CAT04683.1| tRNA uridine 5-carboxymethylaminomethyl modifi [Mycoplasma
           conjunctivae]
          Length = 613

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/621 (41%), Positives = 356/621 (57%), Gaps = 13/621 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ +D IV+GGGHAG EA    AK G   ALIT   + + SM CNP+IGG  KG + REI
Sbjct: 4   NKKFDAIVVGGGHAGVEAVFALAKKGLKVALITLSKNKLASMPCNPSIGGSAKGIITREI 63

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G+  + AD A IQ ++LN  KGPAVR  RTQ D+E Y  A+   +    N+ + + 
Sbjct: 64  DALGGVQAKFADQAMIQIKILNESKGPAVRAIRTQIDKEKYSKAVLSSMKKLNNVFIFED 123

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     +   +  +  Q N       V++TTGT+L   +  G   + +G  G   S+ L
Sbjct: 124 IVLELLVKNKKVYGVRSQKNGDFFAKAVIITTGTYLDSKVLRGSSSVSSGPDGQITSDQL 183

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +K  FD  RLKTGTP R+   +I + + EK+      I FSF + K   +QI C +
Sbjct: 184 SKNLIKLGFDLQRLKTGTPPRIYTDSIDFSEVEKEDVPLLNINFSFSSKKRIKKQISCYL 243

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ +TH IIM+N+  S++YSG IK  GPRYCPS+EDKIVRF  +  HQIF EPE    
Sbjct: 244 TYTSPKTHEIIMQNLDKSSMYSGLIKGIGPRYCPSVEDKIVRFSTKERHQIFFEPETKKQ 303

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D++Y NG+ST++PE++Q Q +++IPGL+   I + GYAIEYD INP EL P+LETKKI  
Sbjct: 304 DIMYINGLSTSMPEDVQIQMVKSIPGLKNARIAKFGYAIEYDAINPLELKPSLETKKIKS 363

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQINGT+GYEEAAAQGL+AGIN+ +K      I   R D YIGV+IDDL +KG  E
Sbjct: 364 LFMAGQINGTSGYEEAAAQGLIAGINAGQKIEGKRAIKILRNDGYIGVLIDDLVTKGTKE 423

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRM TSRAEYR+ LR DNAD R+     K G I +    +  +  +  +   S L    
Sbjct: 424 PYRMLTSRAEYRLILRNDNADIRMAKYAYKSGTITKEEYLKVIQKYRLIDKKISQLDKEF 483

Query: 483 LTSK-NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           ++ K  L           K     + +S PD   +++        +          +   
Sbjct: 484 VSPKDELGKKYNVLNGISK----LKLISRPDTDYKDIVKDFEFGYEL--------MVLCR 531

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
              Y  +Q   A+++   E   IP+  +YS +  LS+E  +KL  +KP  + QAS+I G+
Sbjct: 532 LKGYIQKQNNAAQKMIRLEHLRIPESLNYSEVANLSSEALDKLKKVKPKTIGQASRISGI 591

Query: 602 TPAALNLLLIYIKKNTVKLNE 622
            PA + +LL ++K   ++ N+
Sbjct: 592 NPADIQMLLFHLKVLKIEKNK 612


>gi|320537815|ref|ZP_08037736.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema phagedenis F0421]
 gi|320145354|gb|EFW37049.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema phagedenis F0421]
          Length = 629

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/625 (41%), Positives = 377/625 (60%), Gaps = 17/625 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EAA  AA++G  T LIT    +IG +SCNP+IGG+ KG++VREIDA
Sbjct: 7   DYDVIVVGGGHAGIEAALAAARMGEQTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG++ADA  IQ+R+LN  +GPAV+ PR QAD+ LY    +  +  Q+NL + Q  V
Sbjct: 67  LGGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQKAKHALELQKNLHIYQDTV 126

Query: 125 AGFN---------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                         E   + +I+      I    VVL+TGTF+ G I+IG+ +   GR+G
Sbjct: 127 VDVLSSGTSETGTVESGAVQAILTARGRTISAKAVVLSTGTFMEGKIYIGEYEAAEGRLG 186

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L ++  +  F  GRLKTGTP R+  K++   K E Q AD  + PFSF   ++  
Sbjct: 187 EKAAIGLGSALAQKGFTLGRLKTGTPCRVLRKSVDLSKMEIQEADAIMRPFSFAAAEVHR 246

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            Q  C I  TN  THRII EN   S ++SG I++ G RYCPS+EDK+ +F ERN HQI++
Sbjct: 247 PQATCYIAYTNEHTHRIIRENFHRSPLFSGKIQATGARYCPSVEDKVKKFPERNRHQIYI 306

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+T+ +Y NG+S++LPE++Q   IRTI G E V I RPGYA++Y Y++P +L   L
Sbjct: 307 EPEGLDTEELYINGLSSSLPEDVQDAMIRTIEGFESVVITRPGYAVDYAYVSPLQLGADL 366

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN------KLDCICFSRTDSYIG 409
           +T +I GLF AGQ NGT+GYEEA  QG++AGIN+A  S         +     R ++YIG
Sbjct: 367 QTHRIKGLFTAGQTNGTSGYEEAGGQGIIAGINAALYSRAQKTQKPYEPFVLGRDEAYIG 426

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL ++GV EPYRMFT+RAEYR+ LR D AD RLT     +G   +    R    I+
Sbjct: 427 VMIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQTDSAVHRVRDKIK 486

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           E + + +  ++L +TS    +        GKT    + L  P   +  + ++   A + +
Sbjct: 487 ERSGIIAHWQTLRITSTQAEANPELQSHIGKTF--AQTLQDPTVPLSLIVNLDVQAAEHN 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             ++   ++E  Y  Y   Q    ++++  E   IP +F Y+++  LS E + +L  ++P
Sbjct: 545 EEILHAAELEIRYEHYIIAQNKRIEKMRKMENTKIPPNFSYANISGLSTESRTRLEKVRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             + QA++I+G+ P+ + LL++ ++
Sbjct: 605 ETIGQAARIQGIRPSDIMLLMVQLR 629


>gi|188995801|ref|YP_001930053.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595481|dbj|BAG34456.1| glucose-inhibited division protein A [Porphyromonas gingivalis ATCC
           33277]
          Length = 625

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/625 (42%), Positives = 367/625 (58%), Gaps = 11/625 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G GHAGCEAAA AAKLG+   LIT   + I  MSCNPA+GG+ KG +VRE
Sbjct: 1   MQFNYDVIVVGAGHAGCEAAAAAAKLGSQVLLITPDMNKIAQMSCNPAVGGIAKGQIVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ID+L G MG V DA  IQFR+LN  KGPA+  PR Q+DR  +  A +  +  + NL + Q
Sbjct: 61  IDSLGGRMGIVTDATAIQFRMLNRSKGPAMWSPRAQSDRMRFMEAWRDIVEHEPNLYMWQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V   +  +  ++ +V       +  TVVLTTGTFL GV+H G+  I  GR+ +   + 
Sbjct: 121 DSVRCLSIRQGAVAGVVTALGVEFQARTVVLTTGTFLGGVMHFGERMIEGGRIAEPAFHG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM-TDKITNRQIEC 240
           +        F T R+KTGTPAR+DG++I +  T +Q  +E    FS+M T +   RQ  C
Sbjct: 181 ITEQLRDLGFRTDRMKTGTPARIDGRSIDFSLTTEQSGEEDHHRFSYMDTPRRVLRQRSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
               TN E H I+ + +  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPEG 
Sbjct: 241 YALYTNPECHEILSKGLDRSPLYNGQIQSIGPRYCPSIETKIVTFADKEMHQLFLEPEGE 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
            ++  Y NG S++LP EIQ + ++ IP L  V+I RPGYAIEYD+ +P +L  TLETK +
Sbjct: 301 TSNEFYLNGFSSSLPLEIQLEALKAIPALRHVHIYRPGYAIEYDFFDPTQLRHTLETKPV 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA QGL+AGIN+  + +        R ++YIGV+IDDL SKGV
Sbjct: 361 KGLFFAGQINGTTGYEEAAGQGLIAGINAHLQCHGAGEFTLGRDEAYIGVLIDDLVSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYRI LR D+AD RLTP    +G    RR +   +     + L      
Sbjct: 421 DEPYRMFTSRAEYRILLRQDDADMRLTPKAEAIGLADSRRCELLREKQVFRDKLIDFTHK 480

Query: 481 LVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--------SS 530
             L    ++    S       +    Y+ L  P   +  + ++ P  ++           
Sbjct: 481 FSLKPDLINPHLESAGHLPLKQGIKLYDLLLRPQIGMNEVCTMVPSLQRIVEEIPASRRE 540

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            ++E  +I   Y  Y  R+   A +I   E   +P+  DY  + +LS E ++KL+ ++P 
Sbjct: 541 EIVEAAEILIKYDGYIKRERALADKINRLESIRLPQHVDYMQMQSLSTEARQKLTSIRPE 600

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
            + QAS+I G++P  +++LL+   +
Sbjct: 601 TIAQASRIPGVSPHDVSILLVLCGR 625


>gi|163786965|ref|ZP_02181413.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriales bacterium ALC-1]
 gi|159878825|gb|EDP72881.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Flavobacteriales bacterium ALC-1]
          Length = 586

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/585 (42%), Positives = 348/585 (59%), Gaps = 8/585 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YDVIV+G GHAG EAAA +A +G+ T LIT     I  MSCNPA+GG+ KG +VR
Sbjct: 1   MFNDVYDVIVVGAGHAGSEAAAASANMGSKTLLITMNLQNIAQMSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D + IQF++LN  KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 61  EIDALGGYSGIVSDTSAIQFKMLNKSKGPAMWSPRVQSDRMRFAEDWRLLLEGTPNLDFY 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G   E + +  +       ++  TVVLT GTFL G+IHIG      GR G+  + 
Sbjct: 121 QEMVSGLIVENHKVVGVKTSLGIEVKAKTVVLTNGTFLNGLIHIGDKNFGGGRAGERAAT 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +   FD+GR+KTGTP R+DG+++ + K  +Q  DE    FS++   K    Q  
Sbjct: 181 GITEQLVNLGFDSGRMKTGTPPRVDGRSLDYSKMIEQPGDENPEKFSYLDITKPLQEQRS 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+ + H ++ E    S +++G IKS GPRYCPSIEDKI RF +++ HQ+F+EPEG
Sbjct: 241 CHMTYTSEQVHDLLREGFDRSPMFNGRIKSVGPRYCPSIEDKINRFADKDRHQLFVEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            NT  VY NG ST+LPE++Q + +R++ G E V   RPGYAIEYDY  P +L  TLETK 
Sbjct: 301 WNTCEVYVNGFSTSLPEDVQFKALRSVVGFENVKFFRPGYAIEYDYFPPTQLKHTLETKL 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GL+ AGQINGTTGYEEAA+QGL+AGIN++ K  + +     R ++YIGV+IDDL +KG
Sbjct: 361 VDGLYFAGQINGTTGYEEAASQGLMAGINASLKVQEREVFTLKRDEAYIGVLIDDLITKG 420

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYRMFTSRAEYR  LR DNAD RLTP G ++G   +RR  R  +   + +      K
Sbjct: 421 TEEPYRMFTSRAEYRTLLRQDNADFRLTPKGYEIGLATKRRLSRMEEKQSKSDAFVQFFK 480

Query: 480 SLVLTSKNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICP-----DARKFSSLV 532
              +  +  +    +       +    ++  + P+ + Q++                + V
Sbjct: 481 DTSVKPEEANPVLEAKNSSPVKQQDKMFKLFARPNITTQDVRKFNAVERYIQDNNLDTEV 540

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALS 577
           IE+ +I+  YA Y  ++   A ++   E   IP DFDY+ L ++S
Sbjct: 541 IEQTEIQVKYAGYIEKEKNNADKLNRLENLKIPVDFDYNKLKSMS 585


>gi|212546287|ref|XP_002153297.1| mitochondrial translation optimization protein (Mto1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210064817|gb|EEA18912.1| mitochondrial translation optimization protein (Mto1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 683

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/607 (42%), Positives = 365/607 (60%), Gaps = 23/607 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T     IG  SCNP+ GG+GKG ++REIDALDG+ GRV D AG+ FRVLN  KGPAV 
Sbjct: 65  LVTPSLDNIGVCSCNPSFGGIGKGTMMREIDALDGVAGRVIDKAGVMFRVLNRSKGPAVW 124

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDN 142
           GPR Q DR+LY+  MQ E+++ +NL +++ +V      ++           I  + +   
Sbjct: 125 GPRAQIDRDLYKRYMQEELVATKNLSIVEAKVEDIVVSRDESDQNPHSAGKIVGVRLDSG 184

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
            +I  S VV+TTGTFL G IHIG    P+GRMG++ +++L  S  +  F  GRLKTGTP 
Sbjct: 185 QVIPTSRVVITTGTFLGGEIHIGLEAYPSGRMGEAATHALSKSLRQAGFQLGRLKTGTPP 244

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFM---TDKITNRQIECGITRTNLETHRIIMENIKH 259
           RLD K+I +   E Q  D    PFSFM   T      Q+ C +T TN  TH II  N+ +
Sbjct: 245 RLDKKSIDFSSLEVQRGDSPPNPFSFMNKTTQVSDEGQLTCWMTHTNEATHDIIRANLDN 304

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV-YPNGISTALPEEI 318
           S      +   GPRYCPS+E KI+RF  +  HQI+LEPEG   + V YPNGIS  +P E 
Sbjct: 305 SIHIRETV--RGPRYCPSLEAKILRFKHKKEHQIWLEPEGFAPNEVIYPNGISMTVPVEA 362

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE V +++P Y +EYDYI+P+ L PTLETK I GL+LAGQINGTTGYEEA
Sbjct: 363 QEAMLRTIRGLENVRMLQPAYGVEYDYIDPRNLKPTLETKLIGGLYLAGQINGTTGYEEA 422

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG++AG+N+   +     +  +R D YIG+M+DDL ++GV EPYRMFTSR+E+RIS R
Sbjct: 423 AGQGILAGMNAGLAAQGKAPMVLTRADGYIGIMVDDLITRGVSEPYRMFTSRSEFRISSR 482

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNAD RLT +G +   + + R   F++   + + L  LL +   TS   S      + D
Sbjct: 483 SDNADLRLTAMGREASVVSDERWAHFSETKAQIDELSQLLANTRYTSNQWSRLGFQTRVD 542

Query: 499 GKTRTAYEFLSYPDFSIQNLFS-------ICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
              R+  + L      I +L         I   +  F   + +R+ IE+ YA Y  RQ +
Sbjct: 543 TSYRSGLDMLCVDGIDIDSLIPHITSPSGIAYTSASFDPEIKKRVTIEAQYAPYVKRQSL 602

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
            A++ + EE+ L+P + DYS++  LS E ++ L  ++P N+    +IEG+TP+    +++
Sbjct: 603 MAEKFRREERMLLPSNMDYSAVHGLSTEERQALERVRPENIGMLRRIEGITPSGAVRIMM 662

Query: 612 YIKKNTV 618
           +++K  +
Sbjct: 663 HLRKGRL 669


>gi|332824608|ref|XP_003311451.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 2 [Pan
           troglodytes]
          Length = 732

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/681 (41%), Positives = 400/681 (58%), Gaps = 66/681 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP  +  ++I ++   K   D   +PFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPPIAKESINFNILNKHIPDNPSVPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P
Sbjct: 333 WLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITP 392

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAA--------------------------------- 380
           +LET  +  LF AGQINGTTGYEEAAA                                 
Sbjct: 393 SLETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQVQAILLPQPSLVAGT 452

Query: 381 -------QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
                  QG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+
Sbjct: 453 AGMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEF 512

Query: 434 RISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS 492
           R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S       
Sbjct: 513 RLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLI 572

Query: 493 ISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
                         A + L Y +  + +L    P+  +K++    + ERL+IE++Y +  
Sbjct: 573 PEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVL 632

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I G+TPA
Sbjct: 633 FHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPA 692

Query: 605 ALNLLLIYIK---KNTVKLNE 622
           A+  LL ++K   +    +NE
Sbjct: 693 AIINLLRFVKTTQQRQAAMNE 713


>gi|150866215|ref|XP_001385733.2| Mitochondrial Translation Optimization [Scheffersomyces stipitis
           CBS 6054]
 gi|149387471|gb|ABN67704.2| Mitochondrial Translation Optimization [Scheffersomyces stipitis
           CBS 6054]
          Length = 689

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/646 (42%), Positives = 389/646 (60%), Gaps = 34/646 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           + V+VIGGGHAGCEAA  +A+ G  T LIT     IG+ SCNP++GG+GKG L+RE+DAL
Sbjct: 38  FPVVVIGGGHAGCEAATGSARSGTPTTLITPNVDKIGTASCNPSMGGVGKGTLLREVDAL 97

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+  R+ D AGI F++LN  KG AV GPR Q DR++Y   MQ+EIL+  NL V++  V 
Sbjct: 98  DGVAARITDKAGIHFKILNASKGAAVHGPRAQIDRKIYLEEMQKEILNYPNLSVLEASVE 157

Query: 126 GFNTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               E                +  +V+ D S++ CS VV+TTGTFL G IHIG    P+G
Sbjct: 158 DIIIEPTRDQSTDAEGREFGSVKGLVLGDGSIVGCSKVVVTTGTFLGGEIHIGLTAYPSG 217

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R+G+  +  L  +F    F  GRLKTGTPARL  KTI +     Q +D    P S+M DK
Sbjct: 218 RIGEDATFGLSETFRTAGFKLGRLKTGTPARLSSKTIDYSNLNVQPSDYPPQPISYMNDK 277

Query: 233 IT--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +    + + C  T T  E H++I EN+  S      +K  GPRYCPSIE KI++F ++  
Sbjct: 278 VQLQEQLVNCYQTSTTPEFHKLISENLDKSIHIKETVK--GPRYCPSIESKIIKFPQKQS 335

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEGL+TD+VYPNGIS  +P +IQ Q +R +PG   V +I+PGY +EYDY++P+E
Sbjct: 336 HMVWLEPEGLDTDLVYPNGISCTMPADIQEQLVRMMPGCNNVKMIQPGYGVEYDYVDPRE 395

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TLE+K + GL+LAGQINGTTGYEEAA+QG +AGIN+       + +  +R D Y+GV
Sbjct: 396 LKMTLESKLVDGLYLAGQINGTTGYEEAASQGCLAGINAGLAYKGAEPLELTRADGYLGV 455

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++DDL +KG+ EPYRMFTSR+E+RIS+R DNAD RLT  G   G + E R   + K + +
Sbjct: 456 LVDDLITKGIEEPYRMFTSRSEFRISIRSDNADRRLTEKGYNAGVVSEERYHHYMKEMVQ 515

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTA---YEFLSYPDFSIQNLFS------- 520
           ++ ++  L SL L+    +        D    T    ++ LSY   SI +L         
Sbjct: 516 FHSIKDHLTSLSLSGAIWAPALKGLSSDVNRNTLVDGWKLLSYKGMSIADLLPHMSKFTR 575

Query: 521 ---ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS---SLP 574
              + P     S+ ++ R+ +ES Y  +  ++         +E  L+P +++Y+    L 
Sbjct: 576 DGIVPPYYENLSARLMNRIDVESDYTPWMPKEKAHLTAYAADENLLLPVNYNYNYEGKLK 635

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            +S+E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L
Sbjct: 636 -ISHEVCVLLNTIQPKTIGQARRIQGVTPAAIFELFKLVKGNQAQL 680


>gi|149185269|ref|ZP_01863586.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
 gi|148831380|gb|EDL49814.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
          Length = 617

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/612 (47%), Positives = 406/612 (66%), Gaps = 2/612 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R++D+IV+GGGHAG EAA VAA++GA+TAL++   + IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   RNFDIIVVGGGHAGVEAACVAARMGAATALVSFDLTKIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++GR ADAA I +R+LN  KG AV GPR QADR L+  A+Q  + SQE+L++++GE
Sbjct: 62  ALDGVIGRAADAAAIHYRMLNRSKGSAVWGPRVQADRALFHRAVQGNVKSQESLELVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    E   ++ + + D S +    V+L TGTFL G +  G+ +   GR+G+  +  L 
Sbjct: 122 AASLVLEGGRVTGLALADGSALSAPAVILCTGTFLGGTLFRGEERFEGGRIGEDAARVLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   + D    RLKTGTP RLDGKTI W   E+Q +D      S ++ +  N Q+ C IT
Sbjct: 182 SQLREADLPMARLKTGTPPRLDGKTIDWAVLEEQPSDGEAWTMSSLSTQRMNPQVFCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN + H II  N+  S ++SG I + GPRYCPSIEDKI RFG+R GHQIFLEPEGL+TD
Sbjct: 242 RTNEKAHDIIRVNLDRSPLFSGAIGAAGPRYCPSIEDKIHRFGDREGHQIFLEPEGLSTD 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++QH  +R + GLE+V +  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 LVYPNGISTSLPTDVQHDMLRAMKGLERVEMAVPGYAVEYDHIDPRALRSSLEVKTIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVAG+++A      + +   R++SYI VM+DDLT +GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLVAGMSAAATVLGREPVGLDRSNSYIAVMVDDLTLQGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR  NAD RLT +G++   +G  R + F+   +    + + L+   L
Sbjct: 422 YRMLTSRAEYRLRLRAANADTRLTGLGIEACLVGAERAEWFSHREERRLVIDNQLEE-EL 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            +  L    I  K D  ++   E+L     SI+ L  I        +L +E ++ ++ Y 
Sbjct: 481 HANTLIEGGIRAKADRGSQRLREWLRGGQISIEELAGIVGGIDPQDALTVEMVE-DTIYE 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +++K  E+  +P DF Y+ +P LSNE+ E+L+  +P  L  A ++ G+TP
Sbjct: 540 PYLLRQEAELRDLKAGERLRLPADFPYARVPGLSNEMIERLNKAQPETLSAAGRVPGITP 599

Query: 604 AALNLLLIYIKK 615
           AAL  LL++ ++
Sbjct: 600 AALAALLVHARR 611


>gi|297567556|ref|YP_003686528.1| glucose inhibited division protein A [Meiothermus silvanus DSM
           9946]
 gi|296852005|gb|ADH65020.1| glucose inhibited division protein A [Meiothermus silvanus DSM
           9946]
          Length = 600

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/614 (40%), Positives = 354/614 (57%), Gaps = 18/614 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG EAA  AA++GA   L+T     IG M CNPA+GG GK  LV E+ A+
Sbjct: 4   YDVIVVGGGHAGIEAAWAAAQVGARVGLVTSNPERIGLMPCNPAVGGPGKSQLVAEVVAM 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG++ADA  I  RVLN  KGPAV+  R Q DR+ Y L  QR +L+   ++ I+ EVA
Sbjct: 64  GGLMGQLADATAIHTRVLNQSKGPAVQSLRVQVDRDAYALEAQRVLLAHPRIESIRAEVA 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  ++  D   IR S+VV+ +GTFL GV+  G+   PAGR G+ P+  L  S
Sbjct: 124 ALWVEGGELFGVLTVDGRQIRSSSVVIASGTFLSGVVWYGRQSRPAGRQGEPPARFLSES 183

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTP R+   ++ +   E    D     F+ +             TRT
Sbjct: 184 IRAIGHRMLRFKTGTPPRIRADSVDYGVLEVVPPDVPPQTFAGI-PGPHATARPTWQTRT 242

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
              THR+I EN+  S +Y GDI+  GPRYCPSIEDK++RF ++  H +F+EP+GL T  +
Sbjct: 243 TEATHRLIQENLHLSPLYGGDIEGIGPRYCPSIEDKVIRFADKETHLLFVEPDGLETSEL 302

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S++LP ++Q + +RT+PG EK  I R  YA+EYD ++  EL   L++K++ GLF 
Sbjct: 303 YLQGFSSSLPPQLQERMVRTLPGFEKAIIQRYAYAVEYDAVDATELTAGLQSKRLPGLFT 362

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAG+N+AR +   + I  SR   YIGV+I+DL  +G  EPYR
Sbjct: 363 AGQINGTSGYEEAAAQGLVAGLNAARFARGQEEIRLSRESGYIGVLINDLVHRGTDEPYR 422

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR E R+  R DNAD RL P+ ++ G       ++  +  Q        L+ L + +
Sbjct: 423 MMTSRVELRLLCRADNADERLVPLAVEAGLRTRSDLEKIQRKYQRIQAELERLERLRIEN 482

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIESSYAA 544
                            +A  +L  P+ +  +L + + P   + S+  I +++I + YA 
Sbjct: 483 T----------------SALLWLRRPEATYSDLIARLGPSPFELSADEIIQVEIRAKYAG 526

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  RQ   ++ +K  E   IP   DY  +P+LS E +EKLS  +P  + +AS++ G+  +
Sbjct: 527 YIQRQQKLSERLKELESYHIPMALDYDRIPSLSREAREKLSKTRPATVAEASRVPGVRDS 586

Query: 605 ALNLLLIYIKKNTV 618
            L  LL+Y+ K + 
Sbjct: 587 DLTALLVYLTKASA 600


>gi|194216193|ref|XP_001914686.1| PREDICTED: similar to mitochondrial translation optimization 1
           homolog isoform b (predicted) [Equus caballus]
          Length = 689

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/619 (42%), Positives = 383/619 (61%), Gaps = 26/619 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+   L+TH+   IG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN 
Sbjct: 56  RCGSR-LLLTHRADVIGQMSCNPSFGGIGKGHLMREVDALDGLCCRICDQSGVHYKVLNR 114

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V            T K  +  +
Sbjct: 115 RKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVHGV 174

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S +   +V+LTTGTFLRGV+ IG    PAGR+GD PS  L  +  +  F  GRLK
Sbjct: 175 VLVDGSTVFAESVILTTGTFLRGVMVIGLEMHPAGRLGDQPSIGLAQTLERLGFVVGRLK 234

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP R+  ++I +    KQ  D    PFSF+ + +      Q+ C +T TN     I++
Sbjct: 235 TGTPPRIAKESINFSILNKQTPDNPPTPFSFIHETVWIKPEDQLPCYLTHTNPRVDEIVL 294

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           +N+  ++         GPRYCPSIE K++RF  R  HQ++LEPEGL++ ++YP G+S  L
Sbjct: 295 QNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGLDSGLIYPQGLSVTL 351

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  +++PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 352 PAELQEKMITCIRGLEKAKMVQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTG 411

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ +  +      SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R
Sbjct: 412 YEEAAAQGVIAGINASLRVRRQPPFIISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFR 471

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS---- 489
           +SLRPDNAD+RLT  G  + GC+ ++R +R +          S+LKS+  +S        
Sbjct: 472 LSLRPDNADSRLTFRGYKEAGCVSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIP 531

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYT 546
             SIS  +    R A + L Y +  ++ L    P+  +K++    + +RL+IE++Y +  
Sbjct: 532 EASISVSKSLPLR-ALDVLKYEEVDMEVLAKAIPEPLKKYTECRELAKRLKIEATYESVL 590

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q  E KE++  E   +P+D DY +L   +LS E++EKL   +P  +  AS+I G+TPA
Sbjct: 591 FHQQQEIKEVQRNEALQLPEDLDYLTLRDVSLSYEVREKLQFSRPLTIGAASRIPGVTPA 650

Query: 605 ALNLLLIYIKKNTVKLNEI 623
           AL  LL ++K    K   +
Sbjct: 651 ALINLLRFVKTTQQKQAAV 669


>gi|270013418|gb|EFA09866.1| hypothetical protein TcasGA2_TC012014 [Tribolium castaneum]
          Length = 664

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/635 (46%), Positives = 412/635 (64%), Gaps = 24/635 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+GGGHAG EA+A AA++GA T L+THK  T+G MSCNP+ GG+GKGHL+REI
Sbjct: 27  DKNYDVIVVGGGHAGSEASAAAARMGAQTLLVTHKKETVGEMSCNPSFGGIGKGHLMREI 86

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQ 121
           DALDG+ GR+ D +GIQ++VLN +KGPAV G R Q DR+LY+  +Q E+  +  NLD++ 
Sbjct: 87  DALDGICGRMCDLSGIQYKVLNKRKGPAVWGYRAQIDRDLYKKHIQTELFENTPNLDILV 146

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E                I++ D + I   +V++TTGTFL G I+IG    PA
Sbjct: 147 ASVEDLIVENPTTNSNKQTVIDCHGIILSDGTKIHAKSVIITTGTFLNGQINIGTKIYPA 206

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+GD PS  L  +        GRLKTGTP RL+  TI +   + Q  D   +PFSFM D
Sbjct: 207 GRIGDQPSIGLAKTLAALSLKMGRLKTGTPPRLNSNTINYKVCDIQKGDNPPLPFSFMND 266

Query: 232 KIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           K+      Q+ C +T+T+L+   II  N+  +   + ++   GPRYCPSIE K++RFG R
Sbjct: 267 KVWIKPEDQLVCYLTKTSLDIEPIIRNNLHVNRHVTEEV--TGPRYCPSIESKVLRFGGR 324

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL +D+VYPNG+S  LPEE+Q + I +IPGLEK  I RPGY +EYD+++P
Sbjct: 325 -QHQVWLEPEGLTSDIVYPNGLSCTLPEELQFELIHSIPGLEKAEITRPGYGVEYDFVDP 383

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK-SNKLDCICFSRTDSY 407
           +EL  TLE K+I  LFLAGQINGTTGYEEAAAQG++AGIN+A   +     I  SRT+ Y
Sbjct: 384 RELQTTLELKRIHNLFLAGQINGTTGYEEAAAQGIIAGINAAALVALGKSPITVSRTEGY 443

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IGV+IDDLT+ G  EPYRMFTSRAE+R++LRPDNAD RLT  G ++GC+ + R  +    
Sbjct: 444 IGVLIDDLTTLGTNEPYRMFTSRAEFRLTLRPDNADQRLTAKGYQVGCVNKARYDKMVAM 503

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPD 524
            ++ N   SLLKS+   ++       ++  ++   ++A+  L   +   +I  L ++ P+
Sbjct: 504 QKKLNDGISLLKSITKPARTWRKLLKMAPSRNMMQKSAFNMLDCYNEGITISMLATVAPE 563

Query: 525 ARKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD-YSSLPALSNELK 581
                   L+  RL IE++Y A    Q +E +E++ EE  LIPKD D YS    L++E +
Sbjct: 564 LLPLTHDPLLENRLHIEATYEAAASEQAVEVEEVRKEEALLIPKDLDYYSDTLNLNSEER 623

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           EKL  ++P  +  AS+I G++P+++  LL ++KKN
Sbjct: 624 EKLCSIQPQTIAAASRIPGISPSSVFRLLRFVKKN 658


>gi|85709801|ref|ZP_01040866.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
 gi|85688511|gb|EAQ28515.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
          Length = 617

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/612 (46%), Positives = 403/612 (65%), Gaps = 1/612 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DV+VIGGGHAG EAA  AA++GA T L++     +G+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   HEFDVLVIGGGHAGVEAACAAARMGARTGLVSFDLEAVGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG++G  ADA  I +R+LN  KG AV GPR QADR +++ A+Q+    Q NL +++GE
Sbjct: 62  ALDGVIGIAADAGAIHYRMLNRSKGSAVWGPRVQADRVMFKAAVQQIARQQRNLTLVEGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A  + +   ++ + + D ++++   V+L TGTFL GV+  G+ +   GR+G++ +  L 
Sbjct: 122 AAALSIKGGAVAGLELADGTLLQAPRVILCTGTFLGGVLFRGEERFEGGRIGENAATRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                 D    RLKTGTP RLDG+TI W + E+Q +D+     S +T +  N Q+ C IT
Sbjct: 182 AQLRSADLPMARLKTGTPPRLDGRTIDWSQLEEQPSDDESWTMSPLTKERQNPQVFCAIT 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT    H II +N+  S ++SG I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL T 
Sbjct: 242 RTTQVAHDIIRDNLDRSPLFSGAIDAAGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLGTH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++Q   +R +PGL  V +  PGYA+EYD+I+P+ L P L+ + I GL
Sbjct: 302 LVYPNGISTSLPVDVQQAMLRAMPGLASVEMAVPGYAVEYDHIDPRALTPDLQLRAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGLVAG+ +A  +        +R +SYI VMIDDLT +GV EP
Sbjct: 362 YCAGQINGTTGYEEAAAQGLVAGLEAAASALGAMAPALNRANSYIAVMIDDLTLQGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAEYR+ LR +NA +RLT +G++ GCIG+ R K F++       +     SL +
Sbjct: 422 YRMLTSRAEYRLRLRANNASSRLTGLGLEAGCIGDDRAKWFSERQSSQTTVMEAF-SLSI 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
            ++ L+   ++ ++DG  +T  E+L +   +I  L    PDA      ++E +  +++YA
Sbjct: 481 RARELADAGLNVRRDGGEKTIEEWLRHDGVTIDTLRPWLPDATLEDRQILEEMAEDAAYA 540

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E ++++  E+  +  DF Y  +P LSNE+ E+LS   P  L  A ++ G+TP
Sbjct: 541 PYLARQEAELRDLRASEELPLASDFPYGEVPGLSNEMVERLSSAAPTTLAAAGRVPGVTP 600

Query: 604 AALNLLLIYIKK 615
           AAL+ LL++ ++
Sbjct: 601 AALSALLVHARR 612


>gi|294659139|ref|XP_461483.2| DEHA2F26290p [Debaryomyces hansenii CBS767]
 gi|202953649|emb|CAG89905.2| DEHA2F26290p [Debaryomyces hansenii]
          Length = 690

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/646 (42%), Positives = 394/646 (60%), Gaps = 32/646 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            + VIVIGGGHAGCEAA  +A+ G  T L+T     IG+ SCNP++GG+GKG L+REIDA
Sbjct: 40  EHPVIVIGGGHAGCEAATGSARSGTFTTLVTPSIDKIGTASCNPSMGGVGKGTLLREIDA 99

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+  R+ D AGI F++LN  KG AV GPR Q DR++Y   MQ+EIL+ ENL VI+ +V
Sbjct: 100 LDGVSARITDKAGIHFKILNASKGAAVHGPRAQIDRKIYLTEMQKEILNYENLKVIEAQV 159

Query: 125 AGFNTEKNI-------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                E                +  +V+ D  +++CS VV+TTGTFL G IHIG    PA
Sbjct: 160 EDIIIEPPRDQIIDTSGRNFGIVRGVVLSDGRILKCSKVVVTTGTFLGGEIHIGLSCHPA 219

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GRMG+  ++ L  +F    F  GRLKTGTP RL  KTI +     Q +D    P S++ D
Sbjct: 220 GRMGEEATSGLSKTFRDASFRLGRLKTGTPPRLSSKTIDYTNLAPQLSDYPPQPMSYLND 279

Query: 232 KI--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           ++    + ++C +T T  E H++I +N+  S      +K  GPRYCPSIE KI++F +++
Sbjct: 280 EVDLQEQLMKCHMTSTTPELHKLIADNLDKSIHIRETVK--GPRYCPSIESKIIKFPQKS 337

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H ++LEPEGL+TD+VYPNGIS  +P EIQ   +R +PG E V +++PGY +EYDY++P+
Sbjct: 338 THLVWLEPEGLDTDLVYPNGISCTMPAEIQETMVRMMPGCENVTMLQPGYGVEYDYVDPR 397

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           EL  TLETK + GL+LAGQINGTTGYEEAAAQG +AGIN+     K   +   R+D Y+G
Sbjct: 398 ELKMTLETKLVDGLYLAGQINGTTGYEEAAAQGCLAGINAGLAYAKKPSLDIHRSDGYLG 457

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V++DDL +KGV EPYRMFTSR+E+RIS+R DNAD RL   G   G + E R   F   ++
Sbjct: 458 VLVDDLITKGVEEPYRMFTSRSEFRISIRSDNADKRLLQKGYDAGVVSESRYDHFKNEMK 517

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSIC---- 522
            ++ ++  LKSL  +    +        D    T    ++ LSY D S+ ++        
Sbjct: 518 HFDSIKEHLKSLSFSGAKWAPVLKGCNSDMNKTTVVDGWKLLSYKDVSLSDIIPHLHKFS 577

Query: 523 --PDARKF----SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
              +  +     +  ++ R+ +ES+Y  +  ++    +  + +E  L+P +++Y++   L
Sbjct: 578 PNGELPELYSHVNRRLMGRINVESTYEPWMKKEEAHLRAYQADETLLLPLNYNYTNEGNL 637

Query: 577 --SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
             S E+   L+ ++P  + QA +I+G+TPAA+  L   +K N  +L
Sbjct: 638 KISYEVCHLLNTIQPTTIGQARRIQGVTPAAIFELFKLVKGNQAEL 683


>gi|281353509|gb|EFB29093.1| hypothetical protein PANDA_004709 [Ailuropoda melanoleuca]
          Length = 709

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/660 (44%), Positives = 412/660 (62%), Gaps = 45/660 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  NFDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ +RVLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYRVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLAVQEGAV 155

Query: 125 AGFNT--------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                         K  +S +V+ D S +   +VVLTTGTFLRGVI IG    PAGR+GD
Sbjct: 156 EDLILTDPEPEHAGKCRVSGVVLADGSTVHAESVVLTTGTFLRGVIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  +++ +    KQ  D   IPFSF+ + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNPSIPFSFINETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              Q+ C +T TN     I++EN+  ++         GPRYCPSIE K++RF  R  HQ+
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLENLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQV 332

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP---------------- 337
           +LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  II+P                
Sbjct: 333 WLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIKGLEKAKIIQPDKSSSVFTYFVSFILW 392

Query: 338 -GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
            GY ++YDY++P+++ P+LET  +  LFLAGQINGTTGYEEAAAQG++AGIN++ +  + 
Sbjct: 393 SGYGVQYDYLDPRQITPSLETHLVQRLFLAGQINGTTGYEEAAAQGVIAGINASLRVKRK 452

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGC 455
                SRT+ YIGV+IDDLT+ G  EPYRMFTSRAE+R+SLRPDNAD+RLT  G  ++GC
Sbjct: 453 PPFVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEVGC 512

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS----TSISFKQDGKTRTAYEFLSYP 511
           + +RR +R +          S+LKS+  +S          SIS  +    R A + L Y 
Sbjct: 513 VSQRRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIPAASISIGKSLPLR-ALDVLKYE 571

Query: 512 DFSIQNLFSICPD-ARKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
           +  ++ L    P+  +K+     + ERL+IE++Y +    Q  E KE++ +E   +PKD 
Sbjct: 572 EVDMKLLAKAVPEPLKKYIKCRELAERLKIEATYESVLLHQQQEIKEVQQDEALQLPKDL 631

Query: 569 DYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNEI 623
           DY +L   +LS E++EKL   +P  +  AS+I G+TPAA+  LL ++K   +  + +NE+
Sbjct: 632 DYLTLRDVSLSYEVREKLHFSRPETIGAASRIPGVTPAAIINLLRFVKTTQQRQMAMNEL 691


>gi|47458989|ref|YP_015851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mobile 163K]
 gi|81170559|sp|Q6KID6|MNMG_MYCMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|47458317|gb|AAT27640.1| glucose inhibited division protein a [Mycoplasma mobile 163K]
          Length = 611

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/613 (39%), Positives = 364/613 (59%), Gaps = 11/613 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YD IVIGGGHAG EAA + +K   + ALI+   + + SM CNP+IGG  KG + R
Sbjct: 1   MAAKIYDAIVIGGGHAGVEAAFILSKKNFNVALISLNQNRLASMPCNPSIGGPAKGIITR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G     AD A IQ ++LN  KGPAVR  R Q D+E Y   + + +   +N+D+I
Sbjct: 61  EIDALGGKQAYFADQAMIQIKMLNTSKGPAVRAIRAQIDKEKYSQIILKAVQETKNIDLI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V    T+ N IS ++ + N ++   T ++T GT+L   I  G+ K  +G  G+  SN
Sbjct: 121 EDMVFEIQTKDNKISGVITEKNGLLETKTAIITAGTYLDSYILRGEEKYSSGPDGEKTSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SL NS +K  F   RLKTGTP R+   +I + + E++   E  + FS    K  ++QI C
Sbjct: 181 SLSNSLIKLGFKLLRLKTGTPPRIYANSIDFSEVEEEILPESNLNFSIYHSKKLSKQIHC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T T+ +TH+II++NI  S++YSG IK  GPRYCPS+EDKIVRF ++  HQIF EPE +
Sbjct: 241 YLTYTSEKTHQIILDNINKSSMYSGLIKGIGPRYCPSVEDKIVRFKDKERHQIFFEPETI 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
             D++Y NG+ST++P ++Q Q I++I GL+   + +  YAIEYD I+P +L  +LE+K+I
Sbjct: 301 KADIMYINGLSTSMPIDVQDQMIKSINGLKNAKVAKYAYAIEYDAIDPLQLKKSLESKEI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQINGT+GYEEAA QGL+AGIN++ K    + +   R+DSYIGV+IDDLT+KG 
Sbjct: 361 ENLFFAGQINGTSGYEEAAGQGLLAGINASLKLENREALNLKRSDSYIGVLIDDLTTKGT 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSRAEYR+ LR DNAD RL         + ++                + L++
Sbjct: 421 KEPYRMLTSRAEYRLLLRNDNADIRLLKYAKYAKTLTDKEIATTEAKYDLITKKIAELEN 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
             ++  +  +   +      + +  + +S  +  I+ +    P   + S           
Sbjct: 481 QYISINDPLAKKYNLA---NSTSFLQLISRHEIDIKEIVGNFPFLEELS--------TNV 529

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
               Y  +Q+ +A ++   E   +P+D +Y ++  L+ E ++KL ++KP  + QAS+I G
Sbjct: 530 RLDGYIKKQLSQADKMLRLENLKLPEDLNYDNVVNLAFEARQKLKMIKPLTIGQASRISG 589

Query: 601 MTPAALNLLLIYI 613
           + PA + +L+ ++
Sbjct: 590 INPADIQMLMFHL 602


>gi|41058591|gb|AAR99282.1| glucose-inhibited division protein A [Candidatus Blochmannia
           floridanus]
          Length = 578

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/574 (42%), Positives = 346/574 (60%), Gaps = 8/574 (1%)

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           GHLV+E+DA+ G+M +  D +GIQFR+LN +KG AV+  R QAD+ LYR A++  +  Q+
Sbjct: 1   GHLVKEVDAMGGIMAKAIDQSGIQFRILNTRKGAAVKSTRAQADKILYRQAIRHALEIQD 60

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +L ++Q  V     ++N +  +V+      I   +VVLTTGTFL G IHIG      GR 
Sbjct: 61  SLFILQASVEDLIIKQNKVIGVVIPKIAIEIYAKSVVLTTGTFLNGKIHIGMNNFKGGRS 120

Query: 175 GDSPSNS-LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-K 232
           GD  S+S L        F   RLKTGT  R+  K + +D    Q +D  L  FSF    +
Sbjct: 121 GDLESSSSLSQKLRDLSFRINRLKTGTSPRIHAKGVNFDCMSVQNSDSPLPVFSFTGSLE 180

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +QI C  T TN +TH II  N+  S +YSG I    PRYCPSIEDK+VRF +R+ HQ
Sbjct: 181 QHPKQIPCYSTYTNKKTHDIIRLNLNQSPVYSGLINGISPRYCPSIEDKVVRFSDRDAHQ 240

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEGL T  +Y NG+ST+LP  IQ + I +I GLE  +IIRPGYAIEYD+ +P++L 
Sbjct: 241 VFLEPEGLTTSEIYVNGVSTSLPSNIQTEIIHSIFGLENAHIIRPGYAIEYDFFDPRDLK 300

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLE+K ISGLFL+GQINGTTGYEEAAAQG++AGIN+AR           R  +Y+GV++
Sbjct: 301 LTLESKFISGLFLSGQINGTTGYEEAAAQGILAGINAARYVQNKPGWYPRRDQAYLGVLV 360

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL + G  EPYRMFTSR+EYR+SLR DNAD RLT +  + G I + R + F    +   
Sbjct: 361 DDLCTYGTKEPYRMFTSRSEYRLSLREDNADLRLTTVAREFGLIDDNRWRIFCLKQENIE 420

Query: 473 FLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KF 528
             R  L++  +   +     ++           +  + L  P+ +   L  +      K 
Sbjct: 421 KERQRLRNTYIFPYSEDIVQLNRFLNSPIKNKVSGEDLLKRPEMNYVKLMQLNTFQSVKL 480

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
              V E+++I+  Y+ Y  RQ  E K+  + E  L+P D +Y  +  LS E+ +K +  +
Sbjct: 481 DYQVFEQVEIQIKYSGYLLRQQEEIKKYLYYENTLLPIDINYHDIAGLSKEVIDKFNDCR 540

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNT-VKLN 621
           P+++ QAS+I G+TPAA++ +LI++KK   +K N
Sbjct: 541 PYSIGQASRIPGVTPAAISNVLIWLKKQGLLKKN 574


>gi|332022778|gb|EGI63051.1| Protein MTO1-like protein, mitochondrial [Acromyrmex echinatior]
          Length = 804

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/603 (44%), Positives = 381/603 (63%), Gaps = 14/603 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIV+GGGHAG EA+A A ++GA T L+T K STIG MSCNP+ GG+GKGHL+R
Sbjct: 205 MNKTKFDVIVVGGGHAGTEASAAAVRMGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLMR 264

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDG+  R+ D +GI +RVLN  KGPAV G R Q DR+LY+  +Q E+ +   L + 
Sbjct: 265 EVDALDGVCCRICDISGIYYRVLNKSKGPAVWGLRAQIDRKLYKKHLQAELFNMPRLHIY 324

Query: 121 QGEVAGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +  V     E +      ++++D + +    VV+TTGTFL+G I+IG  K PAGR+ D P
Sbjct: 325 ESSVENLILENDSLSCQGVILRDGTKMFGDAVVITTGTFLKGQINIGLEKRPAGRLNDEP 384

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ- 237
           S  L N+  +  F  GRLKTGTP RL+ ++I + K      D+  IPFSFM+D +     
Sbjct: 385 SIGLANTLDRLGFRIGRLKTGTPPRLEKESIDFTKCTAYPPDDSPIPFSFMSDNVWLPPD 444

Query: 238 --IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
             I   +T TN +  +I+ +N+  +   + +I   GPRYCPSIE KI+RF     HQI+L
Sbjct: 445 KQILTHLTYTNEDVAKIVKDNMHCNLHVTEEI--TGPRYCPSIESKILRFKAL-KHQIWL 501

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL++ ++YP+G+S  LPEE Q + ++ IPGLE   +++PGY +EYDY++P+EL   L
Sbjct: 502 EPEGLDSPLIYPSGLSCTLPEEKQVELVKCIPGLENARLVKPGYGVEYDYVDPRELTTQL 561

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ETKK+ GLFLAGQINGTTGYEEAAAQG++AG+N+A K  K   +  SRT+ YIGV+IDDL
Sbjct: 562 ETKKVPGLFLAGQINGTTGYEEAAAQGIIAGVNAAAKVFKKPPLLISRTEGYIGVLIDDL 621

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T++G  EPYRMFTSR+E+R+SLRPDNAD RLT  G  +GC+   R ++  +  ++   + 
Sbjct: 622 TTEGTTEPYRMFTSRSEFRVSLRPDNADQRLTEKGYAIGCVSRERIEKTREVFRKMQEVV 681

Query: 476 SLLKSLVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDARKFSSL- 531
            +LKS V ++        +   +D   ++A++ LS  D   +   L    P         
Sbjct: 682 QILKSDVRSTSKWRQLLKMKISKDTGYKSAFDMLSVTDESVTFAKLAKQLPQLGHLDGDS 741

Query: 532 -VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKP 589
            +  R++IE+ Y     +Q  +  +I+  E+ ++P D DY+S    LSNE +EKL    P
Sbjct: 742 GLARRIEIETKYVFAVAKQQGQVNDIRRNEQMIVPDDIDYNSPDLNLSNEDREKLMKHLP 801

Query: 590 FNL 592
             +
Sbjct: 802 RTV 804


>gi|206895192|ref|YP_002247577.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737809|gb|ACI16887.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 614

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/613 (41%), Positives = 348/613 (56%), Gaps = 9/613 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+G GHAGCEAA +AAKLGA T LIT    T+  + CNPAIGG GK  LVREIDA
Sbjct: 2   SYDVIVVGAGHAGCEAAHIAAKLGAKTLLITSFIDTVALLPCNPAIGGPGKSQLVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMGRV + + IQ RVLN  KGPAV   R Q D+ LY   M   +   +NL+++Q  V
Sbjct: 62  LGGLMGRVTNRSYIQARVLNKSKGPAVWANRAQVDKYLYPSEMLNRLSQTKNLELMQAHV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
            G   ++N +  +  +D   I   TV+LTTGTFL G I+I     PAGR G+ P+  +  
Sbjct: 122 NGLLYDQNTVYGVKTEDGRHIEGKTVILTTGTFLEGRIYISSWSKPAGRWGEFPATGISE 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              K  F  GR  TGT  R+D KTI + K   Q  D   + FSF  +          + R
Sbjct: 182 DLKKLGFSMGRFNTGTTPRIDEKTIDYSKATIQEND-PGLSFSFWEEPNPPGYKPVYMVR 240

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  T  ++ ENI  +A  +  +   GPRYCPSIE+K V F E+  H IFLEP GL T  
Sbjct: 241 TNARTMALVRENINLTASRASTMVRVGPRYCPSIEEKAVWFPEKTEHLIFLEPVGLGTSE 300

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +YPNG++ +LP +IQ + +RTI GLE+V IIRPGY ++YD + P +L  TLE K +  LF
Sbjct: 301 IYPNGLAISLPVDIQQKVLRTIEGLEEVEIIRPGYTVDYDMVWPMQLNITLEAKHVKNLF 360

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           LAGQINGTTGYEEAAAQG++AGIN+A K+         R + +IG +ID+LT+K + EPY
Sbjct: 361 LAGQINGTTGYEEAAAQGIIAGINAALKALGEPPFTILRHEGFIGTLIDELTTKELAEPY 420

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR+E+R+  R DNA  RL       G + +    +  +   + + + + LK   ++
Sbjct: 421 RMLTSRSEFRMIHRQDNAIWRLAEKAHSRGILTQAEYSKVQERKTKMDEVFNKLKETSVS 480

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                     F    +   A   L  P+  + ++    P+    S      ++IE  Y  
Sbjct: 481 PTY-------FPFLKQPVKAETVLRRPEVHLGDMEQFIPEIAVLSDEEKLTVEIEVKYEG 533

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  ++M     IK  E   IP+DF Y  LP +S E  + L   KP  L QAS++ G+  +
Sbjct: 534 YLQKEMSLLNSIKKLENLNIPQDFQYDGLP-ISREALDVLKKTKPSTLGQASRLAGVHMS 592

Query: 605 ALNLLLIYIKKNT 617
            L ++L  ++K +
Sbjct: 593 DLAVILSALRKGS 605


>gi|171460946|ref|NP_080934.2| protein MTO1 homolog, mitochondrial precursor [Mus musculus]
 gi|148694452|gb|EDL26399.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_b [Mus musculus]
          Length = 669

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 386/618 (62%), Gaps = 27/618 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +GI ++VLN 
Sbjct: 56  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGIHYKVLNR 115

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V              K+ +  +
Sbjct: 116 RKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVEDLVLAEPEPGYPGKSRVRGV 175

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 176 VLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQPSIGLAQTLEKLGFMVGRLK 235

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP RL  ++I +    K   D+  IPFSF++D +      Q+ C +T TN     I++
Sbjct: 236 TGTPPRLAKESINFSILNKHTPDDPSIPFSFLSDSVWIKPEDQLPCYLTHTNPRVDAIVL 295

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++      K  GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 296 ENLHLNSHVQETTK--GPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 352

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 353 PAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTG 412

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 413 YEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 472

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-- 491
           +SLRPDNAD RLT     + GC+  +R +R            S+LKS+  +S        
Sbjct: 473 LSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEEGISVLKSIKFSSSKWKKLIP 532

Query: 492 --SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
              IS  +     +A + L Y +  +++L  + P+   K++    +  RL+IE+SY +  
Sbjct: 533 QIPISINRSLP-VSALDVLKYEEVDMESLVGVLPEPLEKYTACRELARRLKIEASYESVL 591

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E KE++ +E   +P + DY ++   +LS E++EKL + +P  +  AS+I G+TPA
Sbjct: 592 SYQLQEIKEVQQDEALQLPHELDYLTIRDVSLSQEVREKLHLSRPQTIGAASRIPGVTPA 651

Query: 605 ALNLLLIYIK--KNTVKL 620
           A+  LL +++  + + + 
Sbjct: 652 AIINLLRFVRSTRQSRQQ 669


>gi|302892829|ref|XP_003045296.1| hypothetical protein NECHADRAFT_100996 [Nectria haematococca mpVI
            77-13-4]
 gi|256726221|gb|EEU39583.1| hypothetical protein NECHADRAFT_100996 [Nectria haematococca mpVI
            77-13-4]
          Length = 1205

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/602 (43%), Positives = 373/602 (61%), Gaps = 15/602 (2%)

Query: 33   LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
            LIT K   +G+ SCNP+ GG+GKG ++REIDALDGL GR+ D AG+QF VLN +KG AV 
Sbjct: 601  LITPKVDNLGTCSCNPSFGGIGKGTIIREIDALDGLAGRIIDKAGVQFHVLNRRKGAAVW 660

Query: 93   GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--------IISSIVMQDNSM 144
            GPR Q DR+LY+  M+ E+ S  NL ++   V+                I+ + ++   +
Sbjct: 661  GPRAQIDRDLYKKYMREELSSYPNLSIVLDSVSDIVLSDQEPVDGASSRIAGVRLESGQV 720

Query: 145  IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
            +  S V++TTGTFL G IHIG    PAGR+G++ +  L  S     F  GRLKTGTP R+
Sbjct: 721  LPTSKVIITTGTFLGGEIHIGLECYPAGRIGEAATFGLSKSLRDAGFQLGRLKTGTPPRI 780

Query: 205  DGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAIY 263
               +I +D  EKQ+ D+   PFS++ D +    Q+ CG+T TN +TH+I+ +N++ +   
Sbjct: 781  ARDSIKFDILEKQYGDDPPSPFSYLNDTVAVEEQLTCGVTYTNEKTHQIVRDNLEKTIHI 840

Query: 264  SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
               IK  GPRYCPS+E K++RF +++ H ++LEPEG ++ +VYPNG+S  +P E Q Q +
Sbjct: 841  RETIK--GPRYCPSLESKVIRFADKDRHIVWLEPEGFDSPIVYPNGLSMTIPAEAQEQAL 898

Query: 324  RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            RTIPGLE   +++PGY +EYDYI+P+ L  TLETK ISGL+LAGQINGTTGYEEAA QG+
Sbjct: 899  RTIPGLEDSKMLQPGYGVEYDYIDPRGLRSTLETKAISGLYLAGQINGTTGYEEAAGQGV 958

Query: 384  VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
            +AGIN+ R +  L  +  SR D YIG+M+DDL +KGV EPYRMFTSR+E+R++ R DNAD
Sbjct: 959  LAGINAGRAAKGLPGVSLSRGDGYIGIMVDDLITKGVTEPYRMFTSRSEFRMAARADNAD 1018

Query: 444  NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
             RLT  G + G I ++R   ++   Q+ + L   L+S+ L+           K++   R 
Sbjct: 1019 FRLTSKGHEWGVISDKRWSVYSDERQQMDDLTKALRSVSLSPAQWIEKGFHLKRNTARRD 1078

Query: 504  AYEFLSYPD----FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
              + L          ++ L S+ PD   +S  V  R+ IE+ YA Y   Q  E  +   +
Sbjct: 1079 GLDMLRLSSSNTRIELEQLVSVVPDIMNYSPRVRSRVAIEAFYAPYIKMQEAERSQFTND 1138

Query: 560  EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
            E+  IP   DY  +P L+   KE L + +P  L QA ++EG+TP+    LL Y+++N  +
Sbjct: 1139 ERVRIPTSLDYDEIPGLAISEKEALKVARPETLAQARRVEGVTPSGSLRLLAYVRRNPYR 1198

Query: 620  LN 621
             +
Sbjct: 1199 ES 1200


>gi|78099012|sp|Q923Z3|MTO1_MOUSE RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|14485753|gb|AAK63070.1| MTO1 [Mus musculus]
          Length = 669

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 386/618 (62%), Gaps = 27/618 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +GI ++VLN 
Sbjct: 56  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGIHYKVLNR 115

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V              K+ +  +
Sbjct: 116 RKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVEDLVLAEPEPGYPGKSRVRGV 175

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 176 VLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQPSIGLAQTLEKLGFMVGRLK 235

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP RL  ++I +    K   D+  IPFSF++D +      Q+ C +T TN     I++
Sbjct: 236 TGTPPRLGKESINFSILNKHTPDDPSIPFSFLSDSVWIKPEDQLPCYLTHTNPRVDAIVL 295

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++      K  GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 296 ENLHLNSHVQETTK--GPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 352

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 353 PAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTG 412

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 413 YEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 472

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-- 491
           +SLRPDNAD RLT     + GC+  +R +R            S+LKS+  +S        
Sbjct: 473 LSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEEGISVLKSIKFSSSKWKKLIP 532

Query: 492 --SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
              IS  +     +A + L Y +  +++L  + P+   K++    +  RL+IE+SY +  
Sbjct: 533 QIPISINRSLP-VSALDVLKYEEVDMESLVGVLPEPLEKYTACRELARRLKIEASYESVL 591

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E KE++ +E   +P + DY ++   +LS E++EKL + +P  +  AS+I G+TPA
Sbjct: 592 SYQLQEIKEVQQDEALQLPHELDYLTIRDVSLSQEVREKLHLSRPQTIGAASRIPGVTPA 651

Query: 605 ALNLLLIYIK--KNTVKL 620
           A+  LL +++  + + + 
Sbjct: 652 AIINLLRFVRSTRQSRQQ 669


>gi|91090344|ref|XP_967278.1| PREDICTED: similar to glucose inhibited division protein a
           [Tribolium castaneum]
          Length = 659

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/634 (46%), Positives = 410/634 (64%), Gaps = 27/634 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +++YDVIV+GGGHAG EA+A AA++GA T L+THK  T+G MSCNP+ GG+GKGHL+REI
Sbjct: 27  DKNYDVIVVGGGHAGSEASAAAARMGAQTLLVTHKKETVGEMSCNPSFGGIGKGHLMREI 86

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQ 121
           DALDG+ GR+ D +GIQ++VLN +KGPAV G R Q DR+LY+  +Q E+  +  NLD++ 
Sbjct: 87  DALDGICGRMCDLSGIQYKVLNKRKGPAVWGYRAQIDRDLYKKHIQTELFENTPNLDILV 146

Query: 122 GEVAGFNTEKNI----------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E                I++ D + I   +V++TTGTFL G I+IG    PA
Sbjct: 147 ASVEDLIVENPTTNSNKQTVIDCHGIILSDGTKIHAKSVIITTGTFLNGQINIGTKIYPA 206

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+GD PS  L  +        GRLKTGTP RL+  TI +   + Q  D   +PFSFM D
Sbjct: 207 GRIGDQPSIGLAKTLAALSLKMGRLKTGTPPRLNSNTINYKVCDIQKGDNPPLPFSFMND 266

Query: 232 KIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           K+      Q+ C +T+T+L+   II  N+  +   + ++   GPRYCPSIE K++RFG R
Sbjct: 267 KVWIKPEDQLVCYLTKTSLDIEPIIRNNLHVNRHVTEEV--TGPRYCPSIESKVLRFGGR 324

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL +D+VYPNG+S  LPEE+Q + I +IPGLEK  I RPGY +EYD+++P
Sbjct: 325 -QHQVWLEPEGLTSDIVYPNGLSCTLPEELQFELIHSIPGLEKAEITRPGYGVEYDFVDP 383

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           +EL  TLE K+I  LFLAGQINGTTGYEEAAAQG++AGIN+         I  SRT+ YI
Sbjct: 384 RELQTTLELKRIHNLFLAGQINGTTGYEEAAAQGIIAGINAL----GKSPITVSRTEGYI 439

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV+IDDLT+ G  EPYRMFTSRAE+R++LRPDNAD RLT  G ++GC+ + R  +     
Sbjct: 440 GVLIDDLTTLGTNEPYRMFTSRAEFRLTLRPDNADQRLTAKGYQVGCVNKARYDKMVAMQ 499

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTS-ISFKQDGKTRTAYEFLSYPD--FSIQNLFSICPDA 525
           ++ N   SLLKS+   ++       ++  ++   ++A+  L   +   +I  L ++ P+ 
Sbjct: 500 KKLNDGISLLKSITKPARTWRKLLKMAPSRNMMQKSAFNMLDCYNEGITISMLATVAPEL 559

Query: 526 RKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD-YSSLPALSNELKE 582
                  L+  RL IE++Y A    Q +E +E++ EE  LIPKD D YS    L++E +E
Sbjct: 560 LPLTHDPLLENRLHIEATYEAAASEQAVEVEEVRKEEALLIPKDLDYYSDTLNLNSEERE 619

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           KL  ++P  +  AS+I G++P+++  LL ++KKN
Sbjct: 620 KLCSIQPQTIAAASRIPGISPSSVFRLLRFVKKN 653


>gi|324507225|gb|ADY43066.1| Unknown [Ascaris suum]
          Length = 658

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/623 (45%), Positives = 388/623 (62%), Gaps = 18/623 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGGHAGCEAA  AA+ G ST L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA+D
Sbjct: 21  DVIVVGGGHAGCEAATAAARTGVSTVLLTHRQDTIGEMSCNPSFGGIGKGHLIREVDAMD 80

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQGEVA 125
           G+ GR+ D   I ++ LNV +GPAV G R Q DR LY+  M++EI  +  NL VI+G V 
Sbjct: 81  GVCGRICDQTAITYQALNVGQGPAVLGLRAQIDRSLYKRHMRKEIVENTPNLRVIEGAVE 140

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E+       ++ + ++D  M+   +VV+TTGTFL G I  G  K PAGR+G+  S 
Sbjct: 141 DLAIERAEDGSLCVAGVRLEDGRMLLSKSVVITTGTFLGGQIFRGMKKYPAGRIGEKSST 200

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN---RQ 237
            L  +  +  F  GRL+TGTP RL  +TI ++K      D + IPFSF+TD++      Q
Sbjct: 201 GLSKTLNELGFKLGRLRTGTPPRLLKRTIDFNKFTTMLPDRKPIPFSFLTDRVWLDPSEQ 260

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +   ++ TN    +++ +N  ++     +  + GPRYCPS+E KI++F     H+IFLE 
Sbjct: 261 LPTYLSYTNDRVAQLVHDNFHNNEYIRSE--ANGPRYCPSLEAKILKFANM-HHRIFLEH 317

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL ++++YP G+S     E+Q Q +R IPGLE V I   GY +EYD++NP++L P+LET
Sbjct: 318 EGLESELIYPQGMSMTFQPEVQLQIMRAIPGLENVEITEAGYGVEYDFVNPQQLHPSLET 377

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L  AGQINGTTGYEEAAAQG+VAGIN++  S   +C+   RT+ YIGV+IDDLTS
Sbjct: 378 KVVKRLLFAGQINGTTGYEEAAAQGVVAGINASALSRGKECLLIDRTEGYIGVLIDDLTS 437

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAE+R+ LRPDNAD RLT    + G + E R  RF    ++++   +L
Sbjct: 438 LGTSEPYRMFTSRAEFRLHLRPDNADMRLTEKAYRAGAVSEHRYARFCTMRRKFDDAVAL 497

Query: 478 LKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKF--SSL 531
           LKS+ +       +   F   K  GK   AYE L   D S++ L +  P +  KF     
Sbjct: 498 LKSIEMPISRWIQSLPRFTTKKGGGKVLNAYEMLHRFDISMEQLATAFPNELNKFVGDEQ 557

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
           +  R++ E  YA    R     +E++ E   LIP++ DYS++  LS E KEK    +P N
Sbjct: 558 LESRIKNEGIYAQQHERLTARMEEVRRECATLIPENTDYSTMDGLSFECKEKFETWRPQN 617

Query: 592 LLQASKIEGMTPAALNLLLIYIK 614
           L  AS+I G+TP AL +LL Y+K
Sbjct: 618 LAAASRIPGITPEALCILLRYLK 640


>gi|12859113|dbj|BAB31540.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 385/618 (62%), Gaps = 27/618 (4%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +GI ++VLN 
Sbjct: 56  RCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGIHYKVLNR 115

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSI 137
           +KGPAV G R Q DR+LY+  MQ+EILS   L V +G V              K+ +  +
Sbjct: 116 RKGPAVWGLRAQIDRKLYKQNMQKEILSTPLLTVQKGAVEDLVLAEPEPGYPGKSRVRGV 175

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V+ D S I   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLK
Sbjct: 176 VLADGSTIYAESVILTTGTFLRGMIIIGLEMHPAGRLGDQPSIGLAQTLEKLGFMVGRLK 235

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIM 254
           TGTP RL  ++I +    K   D+  IPFSF++D +      Q+ C +T TN     I++
Sbjct: 236 TGTPPRLGKESINFSILNKHTPDDPSIPFSFLSDSVWIKPEDQLPCYLTHTNPRVDAIVL 295

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           EN+  ++      K  GPRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  L
Sbjct: 296 ENLHLNSHVQETTK--GPRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSVTL 352

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
           P E+Q + I  I GLEK  ++ PGY ++YDY++P+++ P+LET  +  LF AGQINGTTG
Sbjct: 353 PAELQEKMITCIRGLEKAKMVHPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTG 412

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R
Sbjct: 413 YEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFR 472

Query: 435 ISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-- 491
           +SLRPDNAD RLT     + GC+  +R +R            S+LKS+  +S        
Sbjct: 473 LSLRPDNADTRLTFRAHKEAGCVSSQRFERALWMKSSLEEGISVLKSIKFSSSKWKKLIP 532

Query: 492 --SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYT 546
              IS  +     +A + L Y +  +++L  + P+   K++    +  RL+IE+SY +  
Sbjct: 533 QIPISINRSLP-VSALDVLKYEEVDMESLVGVLPEPLEKYTACRELARRLKIEASYESVL 591

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPA 604
             Q+ E KE+  +E   +P + DY ++   +LS E++EKL + +P  +  AS+I G+TPA
Sbjct: 592 SYQLQEIKEVHQDEALQLPHELDYLTIRDVSLSQEVREKLHLSRPQTIGAASRIPGVTPA 651

Query: 605 ALNLLLIYIK--KNTVKL 620
           A+  LL +++  + + + 
Sbjct: 652 AIINLLRFVRSTRQSRQQ 669


>gi|307208732|gb|EFN86010.1| Protein MTO1-like protein, mitochondrial [Harpegnathos saltator]
          Length = 607

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/606 (44%), Positives = 382/606 (63%), Gaps = 15/606 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+T K STIG MSCNP+ GG+GKGHL+RE+DALDG+  R+ D +GI +++LN +
Sbjct: 1   MGAKTLLVTQKKSTIGEMSCNPSFGGIGKGHLMREVDALDGVCCRICDISGIHYKILNKR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI--ISSIVMQDNSM 144
           KGPAV G R Q DR+LY+  +Q E+ +   L + +  V       +      ++++D + 
Sbjct: 61  KGPAVWGLRAQIDRKLYKKHLQAELFNMPGLHICESSVEDLILANDSLSCRGVILKDGTK 120

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I   +VV+TTGTFL+G I+IG  K PAGRM D PS  L N+  +  F  GRLKTGTP RL
Sbjct: 121 IFGDSVVITTGTFLKGQINIGLEKRPAGRMDDEPSIGLANTLDRLGFRVGRLKTGTPPRL 180

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSA 261
           + ++I + K  K   DE  IPFSFM +K+    + Q+   +T TN    +II +N+  + 
Sbjct: 181 EKESIDFTKCIKHLPDECPIPFSFMNNKVWLLPDEQVPTYLTYTNKNVAKIIRDNMHCNL 240

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
             + +I   GPRYCPSIE K++RF     HQ++LE EGL++ ++YP+G+S  LPEE Q +
Sbjct: 241 HVTEEI--TGPRYCPSIESKVLRFAT-TTHQVWLELEGLDSPLIYPSGLSCTLPEEKQVE 297

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            ++ I GLE   + RPGY +EYDYI+P+EL   LETKKI GLFLAGQINGTTGYEEAAAQ
Sbjct: 298 LVKCILGLENARLARPGYGVEYDYIDPRELTSELETKKIPGLFLAGQINGTTGYEEAAAQ 357

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G++AG+N+A K  K   +  SRT+ YIGV+IDDLT++G  EPYRMFTSRAE+R+SLRPDN
Sbjct: 358 GIIAGVNAAAKVLKKPPLVISRTEGYIGVLIDDLTTQGTTEPYRMFTSRAEFRLSLRPDN 417

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGK 500
           AD+RLT  G K+GC+   R  R     ++      LL+S   ++        +   +  +
Sbjct: 418 ADHRLTEKGYKVGCVSRERMDRTWNTQRKIQEAIQLLQSERQSNHKWRHMLKLKHTKSIQ 477

Query: 501 TRTAYEFL--SYPDFSIQNLFSICPDA---RKFSSLVIERLQIESSYAAYTGRQMIEAKE 555
            ++A++ L  +  + +   L  I P+          ++ R++IE+ YA     Q  +  +
Sbjct: 478 NKSAFDILGNTNDEITFAQLAKILPELLGHLDGDPTLMIRVEIEAKYAFVVANQQNQVDD 537

Query: 556 IKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           I+  E+ +IP+D DY+S    LSNE KEKL+   P  +  A+KI G+TP A+  LL YI+
Sbjct: 538 IRRNEQMIIPEDIDYNSNELNLSNEDKEKLTKYLPRTIAAANKISGVTPIAILKLLYYIR 597

Query: 615 KNTVKL 620
             + + 
Sbjct: 598 HRSSEY 603


>gi|291297418|ref|YP_003508816.1| glucose inhibited division protein A [Meiothermus ruber DSM 1279]
 gi|290472377|gb|ADD29796.1| glucose inhibited division protein A [Meiothermus ruber DSM 1279]
          Length = 610

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/616 (40%), Positives = 351/616 (56%), Gaps = 18/616 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R+YDVIV+GGGHAG EAA  AA+LGA   L+T     IG M CNPA+GG GK  LV 
Sbjct: 7   MGMRAYDVIVVGGGHAGIEAAWAAARLGARVGLVTSNPERIGLMPCNPAVGGPGKSQLVA 66

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EI+AL GLMGR+ADA  I  RVLN  KGPAV+  R Q DR+LY L  QR +L    ++ +
Sbjct: 67  EIEALGGLMGRLADATAIHTRVLNRSKGPAVQSLRVQVDRDLYALEAQRVLLGHPQIESV 126

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           + EVA    E+  +  +   D   +    VV+ +GTFL+GV+  G+   PAGR G+ P+ 
Sbjct: 127 RAEVAALWVERGRLCGVQTVDGRKLPARAVVVASGTFLQGVVWYGRQSRPAGRQGEPPAR 186

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  S         R KTGTP R+   ++ + K E   AD     FS +           
Sbjct: 187 FLSESLRAVGHRLLRFKTGTPPRIQADSVDYQKLEVVPADNPPETFSGV-PGPHATARPT 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             TRT   THR+I EN+  S +Y GDI+  GPRYCPSIEDK+VRF ++  H +F+EP+GL
Sbjct: 246 WQTRTTAATHRLIQENLHLSPLYGGDIEGIGPRYCPSIEDKVVRFSDKETHLLFVEPDGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T  +Y  G S++LP E+Q Q ++++PG E+  I R  YA+EYD ++P EL P L+++ +
Sbjct: 306 HTTELYLQGFSSSLPPELQIQMVQSLPGFERAVIQRYAYAVEYDAVDPLELTPGLQSRML 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQ+NGT+GYEEAAAQGL+AG+N+AR +  L+     R   YIGVMIDDL  +GV
Sbjct: 366 PGLFTAGQLNGTSGYEEAAAQGLLAGLNAARYAMGLEEAHLPRASGYIGVMIDDLVHRGV 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM TSR E R+  R DNAD RL P+    G       K               L+ 
Sbjct: 426 DEPYRMMTSRVELRLLCRSDNADERLVPLAADWGLRLAEDLKAVQAKYARVQGELLRLQR 485

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIE 539
             +                +  +A ++L  P+ S + +  +        S     ++++ 
Sbjct: 486 SRI----------------EGVSALQYLRRPEASYEQVLQMIGSPEMPLSKAEAYQVEVR 529

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
           + YA Y  RQ    +++K  E   +P D DY+ +P+LS E  EKL  ++P ++ +AS++ 
Sbjct: 530 AKYAGYMERQARLREKLKELEAYRLPADLDYACVPSLSKEAVEKLGRIRPHSVAEASRVP 589

Query: 600 GMTPAALNLLLIYIKK 615
           G+  + +  LL++I K
Sbjct: 590 GIRDSDITALLVHIAK 605


>gi|116192205|ref|XP_001221915.1| hypothetical protein CHGG_05820 [Chaetomium globosum CBS 148.51]
 gi|88181733|gb|EAQ89201.1| hypothetical protein CHGG_05820 [Chaetomium globosum CBS 148.51]
          Length = 856

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/652 (42%), Positives = 387/652 (59%), Gaps = 41/652 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIVIGGGHAG EA A AA+ GA TALIT +   +G  SCNP+ GG+GKG ++REID
Sbjct: 160 EPFDVIVIGGGHAGSEACAAAARAGARTALITPEIDNLGVCSCNPSFGGIGKGTIIREID 219

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GR+ D AG+QF++LN  KG AV GPR Q DR LY+  M+ E+ +  NL ++ G 
Sbjct: 220 ALDGLAGRIIDKAGVQFKILNKTKGAAVWGPRAQIDRVLYQKHMREELETYPNLSIVLGR 279

Query: 124 VAGFNTEKN-----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V+      N            I+ + ++   ++  + V++TTGTFL G IHIG    P+G
Sbjct: 280 VSDIVIADNHGDADADGAKGKITGVRLESGEVLPTTQVIITTGTFLGGEIHIGMEVYPSG 339

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           RMG+  +  L  S     F  GRLKTGTP R+   +I W   ++Q  D+  +PFS++ D 
Sbjct: 340 RMGEQATFGLSKSLRDAGFQLGRLKTGTPPRIAKNSINWGILDEQPGDDPPMPFSYLNDT 399

Query: 233 IT--NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +   N Q+ C +T TN  TH ++  N+  +      +K  GPRYCPS+E K++RFGER  
Sbjct: 400 VAVGNDQLLCHLTYTNEATHEVVRANLDKTIHIRETVK--GPRYCPSLESKVIRFGERPR 457

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEG ++DV+YPNG+S  +P E Q Q +RTI GLE   +++PGY +EYDY++P+ 
Sbjct: 458 HIVWLEPEGFDSDVIYPNGLSMTVPAEAQEQLLRTIRGLENSVMLQPGYGVEYDYVDPRS 517

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  +LETK I GLFLAGQINGTTGYEEAA QG+VAGIN+ R +  L  +  SR+D+YIG+
Sbjct: 518 LKRSLETKAIRGLFLAGQINGTTGYEEAAGQGIVAGINAGRAAQGLPPVTLSRSDAYIGI 577

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL +KGV EPYRMFTSR+E+R+S R DNAD RLTP G + G + + R   F   +Q 
Sbjct: 578 MIDDLITKGVSEPYRMFTSRSEFRLSTRSDNADTRLTPYGRQWGVVSDARWAHFRNDVQL 637

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFK------------QDGKTRTAYEFLSYPDFSIQNL 518
               ++LL+++ LT        I               +  + R  +E +     + +++
Sbjct: 638 AADFKNLLRNMNLTPAEWHQAGIPISHALSSIPGVSSTKTDRKRDGHEVIRLRGITAEHI 697

Query: 519 FSI-CPDA-------------RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
                P               +K+   V  R+ ++  Y  Y   Q  EA  +  +E   +
Sbjct: 698 IHARLPGLTEEDTNTKNPHHQQKYPPRVRARVAVDVVYEPYVRAQAAEAARLHRDEALGL 757

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           P D DY ++  LS   ++ LS ++P  L QA +IEG+TPA L  LL  +++ 
Sbjct: 758 PGDLDYETVQGLSIVERDVLSRVRPETLAQARRIEGVTPAGLVKLLAAVRRG 809


>gi|131890132|ref|NP_001076478.1| protein MTO1 homolog, mitochondrial [Danio rerio]
 gi|124481809|gb|AAI33158.1| Zgc:158782 protein [Danio rerio]
          Length = 659

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/636 (43%), Positives = 379/636 (59%), Gaps = 22/636 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIV+GGGHAG EA A A+++GA T LIT K  TIG++SCNP++GG+GKGHLVREI
Sbjct: 24  TQHYDVIVVGGGHAGSEAVAAASRIGAKTLLITQKIQTIGALSCNPSLGGVGKGHLVREI 83

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+MGR  D AGI F +LN  KGPAV G R Q DR+ Y+  MQ E+LS   + +++G
Sbjct: 84  DALDGVMGRAGDWAGIHFSILNRSKGPAVWGLRAQLDRQRYKDFMQSELLSTPLVTILEG 143

Query: 123 EVAGFNT--------EKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            V              K+ +  I + +    I  S+VVLTTGTFL G + +G+   P GR
Sbjct: 144 SVQDLLLTEADPGKPGKHKVYGICLANGGGEIHSSSVVLTTGTFLSGALFMGQNTTPGGR 203

Query: 174 MGDSP-SNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           MGD P    L ++         GRL+TGTP R+   +I +  T     D    PFSF+  
Sbjct: 204 MGDPPSCAGLSHNLKNVLGLKIGRLRTGTPPRIVKDSIDFSLTSVCLPDSSPTPFSFINK 263

Query: 232 KIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                   Q+ C +T T     +++ E+   ++    DIK  GPRYCPSIE K++RF  R
Sbjct: 264 HTHCTPKEQLPCFLTYTTPGVEKVVKESSHLNSHIQQDIK--GPRYCPSIESKVLRFPGR 321

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ++LEPEGL + ++YP G+S  +P E+Q + IR IPGL+   I  PGY ++YD++ P
Sbjct: 322 -QHQVWLEPEGLTSSLMYPQGLSMTMPLEMQLRLIREIPGLQHAKIQTPGYGVQYDFVCP 380

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
            +LFP L+ K   GLFLAGQINGTTGYEEAAAQGL AG+N+ R S  +  +  SRT SYI
Sbjct: 381 TQLFPWLQLKNTQGLFLAGQINGTTGYEEAAAQGLWAGVNAGRTSLSMSPLSLSRTQSYI 440

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKY 467
           GV+IDDL   GV EPYRMFTSRAE+R SLRPDNAD RLT  G  ++GC+ E+R  +    
Sbjct: 441 GVLIDDLVCHGVTEPYRMFTSRAEFRTSLRPDNADLRLTIRGFEEIGCVSEQRYNKALLV 500

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICPD 524
                   S L+S+ L++             K         E L Y D + Q L S   +
Sbjct: 501 QASLKQALSTLQSIHLSAARWRDKLGGVTISKTKSSILNGAEVLQYKDVTFQMLASSFQE 560

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEK 583
                  + ERL++E+ Y  +  +Q  E ++++ EE   +P D DY +LP +LS E++E 
Sbjct: 561 LFGPHLEISERLKVEALYHPHCEKQRREMEKMQTEESLSLPNDIDYLALPISLSQEVREI 620

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           L  ++P  L  A+++ G+TPAA+  L  Y+ +N  +
Sbjct: 621 LDRVRPSTLGAAARLPGITPAAIVHLFNYVHRNKHR 656


>gi|209544085|ref|YP_002276314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531762|gb|ACI51699.1| glucose inhibited division protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 620

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/619 (49%), Positives = 396/619 (63%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIGGGHAGCEAAA AA+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MTTEYDVIVIGGGHAGCEAAAAAARCGARTLLLTHRRDTIGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLM R AD AGI F++LN  KGPAV GPR QADR LYR A+Q  +    NLD+ +
Sbjct: 61  IDALDGLMARAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRRAIQDLLAETANLDIAE 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       +     + +V +D    R   VVLT GTFLRGVIHIG    PAGR+G+ P++
Sbjct: 121 GAAGDLIVDDAGQAAGVVCEDGRQFRAGAVVLTAGTFLRGVIHIGHDSHPAGRVGEPPAH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L           GRLKTGTPARLD  +I WD   +   D    PFS +T  I N Q+ C
Sbjct: 181 ALGERLQALGLPMGRLKTGTPARLDRTSIDWDSLAEDRGDAVPEPFSRLTQAIDNPQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE-- 298
            IT T   TH +I E++  SA+Y G I   GPRYCPSIEDK+VRF ER+ HQIFLEPE  
Sbjct: 241 RITATTPRTHALIREHLHLSAVYGGAIAGRGPRYCPSIEDKVVRFAERDSHQIFLEPEAL 300

Query: 299 --GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                 D+VYPNGIST+LP +IQ Q I +IPGLE+  I+RPGYA+EYDY++P+ L PTLE
Sbjct: 301 PGNAGGDLVYPNGISTSLPADIQEQLIHSIPGLERCRIVRPGYAVEYDYVDPRALAPTLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
              +  LFLAGQINGTTGYEEA AQGL+AG+N+AR++   + I   R  +Y+GVMIDDLT
Sbjct: 361 LTALPRLFLAGQINGTTGYEEAGAQGLLAGLNAARRAGGGEGIAIDRGAAYLGVMIDDLT 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR+SLR DNAD RLT  G+  GC+G  R   F       +    
Sbjct: 421 TQGVSEPYRMFTSRAEYRLSLRADNADLRLTGQGIGWGCVGSARAHLFTAERDAIDTAMQ 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +       L    I+   DG+ RT  + L+    +   +  I P      S V   +
Sbjct: 481 RAGAESFLPDALQQAGITVSADGRRRTLLDVLATA-ATPDAIARIAPWFAALPSRVSRHV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E+ Y+ Y  RQ  E ++++ E +  +P D DY  +  LS+E++E+L+  +P +   A 
Sbjct: 540 ETEARYSGYLVRQAREIRQLEAETRITLPADLDYRRIGGLSSEMQERLAAARPASFSAAQ 599

Query: 597 KIEGMTPAALNLLLIYIKK 615
           ++ G+TP+AL  LL ++++
Sbjct: 600 RVPGITPSALMALLSHVRQ 618


>gi|182412705|ref|YP_001817771.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Opitutus terrae PB90-1]
 gi|177839919|gb|ACB74171.1| glucose inhibited division protein A [Opitutus terrae PB90-1]
          Length = 625

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/628 (38%), Positives = 342/628 (54%), Gaps = 39/628 (6%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV G GHAG EA+  AA++GA T L+T    T+G MSCNPAIGG  KG +VREIDAL G 
Sbjct: 2   IVCGAGHAGIEASLAAARVGAFTLLLTGNLDTVGQMSCNPAIGGQAKGQIVREIDALGGE 61

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           M    D  GIQFR+LN  KGPAV+ PR Q D++ Y+  ++  +  Q +L + Q  V G  
Sbjct: 62  MAINTDVTGIQFRLLNHTKGPAVQSPRAQCDKKAYQFRLKHTLELQPHLQLFQATVTGLI 121

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
            +   +       +      TVV+TTGTFLRG++HIG  K   GR+GD  + +L  S  +
Sbjct: 122 FDGAKVIGCRTNLDIEFYGRTVVVTTGTFLRGLMHIGSNKNEGGRLGDFSARTLSGSLQE 181

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN------------- 235
              +  R KTGTP RL G+++ + K E+Q  D     F+F   +                
Sbjct: 182 AGIELRRFKTGTPPRLLGRSLDFSKMEEQKGDANPTFFAFHDTREDGGVFHVEHGKPQGE 241

Query: 236 ------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
                  Q+ C +T T   T  ++ EN+  SA+Y G+I+  GPRYCPSIEDK VRF ++ 
Sbjct: 242 AIPPGCEQVSCWMTYTTARTAELVRENLSRSAMYGGEIEGVGPRYCPSIEDKFVRFADKP 301

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H +FLEPEG  TD  Y NG+ST+LP ++Q + + +IPGL +  ++RP YA+EYDY  P 
Sbjct: 302 RHLLFLEPEGRGTDEFYVNGLSTSLPFDVQLELVHSIPGLGEAVLLRPAYAVEYDYAPPT 361

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
           +L  +LE++++ GLFLAGQINGT+GYEEAA QGL+AG+N+ARK      +   R ++YIG
Sbjct: 362 QLKMSLESQRVEGLFLAGQINGTSGYEEAAGQGLIAGVNAARKGRGEQPLVLGRHEAYIG 421

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL +KG  EPYRMFTSRAE+R+ L   +A+ RL         +   R    A+  +
Sbjct: 422 VLIDDLVTKGTEEPYRMFTSRAEHRLLLNHGSAELRLLHHASGCKLLNVNRLDNIARKKE 481

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
                   L+S                      T  E +   +        +  +  + S
Sbjct: 482 AIESWVRRLESER----------------TSEGTLAEIIRRQNAR----AELPSELMRQS 521

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V + +     Y+ Y  R+     ++   E   IP   DY  +P L  E   KL+  +P
Sbjct: 522 KPVRDEVLYRVLYSGYWEREQRHIDKLAQIEAVRIPAAIDYLRIPGLRRESALKLAAQRP 581

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNT 617
             L QAS+I G+ PA +++L++ IK   
Sbjct: 582 DTLGQASRISGVNPADVSILMVLIKTGK 609


>gi|308509486|ref|XP_003116926.1| hypothetical protein CRE_02046 [Caenorhabditis remanei]
 gi|308241840|gb|EFO85792.1| hypothetical protein CRE_02046 [Caenorhabditis remanei]
          Length = 637

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/620 (44%), Positives = 388/620 (62%), Gaps = 11/620 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
                DVIVIGGGHAGCE+AA +A+ G+ T L+T   +TIG MSCNP+ GG+GKGHL+RE
Sbjct: 13  FQTEVDVIVIGGGHAGCESAAASARCGSKTILVTQNKNTIGEMSCNPSFGGIGKGHLIRE 72

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGL  R+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S E L+V++
Sbjct: 73  VDALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKKHMQNEINSTERLEVVE 132

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEVA    +   +  + M ++++I    VV+TTGTFLR  I+ G    PAGR+G+  S+ 
Sbjct: 133 GEVAELLVKNKKVVGVKMANDTIISTKCVVITTGTFLRAQIYQGMKVWPAGRIGEKSSDI 192

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQI 238
           L  SF++  F+ GRL+TGTP RL   +I + K E    D++ IPFSF+T+ I      Q+
Sbjct: 193 LSESFLQHGFELGRLRTGTPPRLMKDSIDFSKFEMVKPDQKPIPFSFLTENIWIKYEDQL 252

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
              +  TN ET RI  EN+  +  Y    ++  PRYCPS E K++RF  +  H++FLE E
Sbjct: 253 PTYLGHTNEETCRIGQENMHEN--YQVASETTSPRYCPSFESKVLRFP-KLQHRLFLEHE 309

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL++  +YP G+S     E+Q +  R IPGLE V I +PGY ++YD++NPK+L  TLET+
Sbjct: 310 GLDSPHIYPQGMSMTFKPEVQKEIFRAIPGLENVEIFQPGYGVQYDFVNPKQLKKTLETQ 369

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           K+ G+FLAGQINGTTGYEEAAAQG+VAGIN++ ++     +  SRT++YIGV+IDDLTS 
Sbjct: 370 KVEGMFLAGQINGTTGYEEAAAQGVVAGINASARAQNEPAMEVSRTEAYIGVLIDDLTSL 429

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRM TSRAE+R+ LRPDNAD RLT +G +   I + R   F+K     N L    
Sbjct: 430 GTNEPYRMLTSRAEFRLHLRPDNADIRLTELGRRHNAISDERWSTFSKTRDALNDLTEKT 489

Query: 479 KSLVLTSKNLS----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           + + ++           S + + +GK  +A+E +   D   ++L  +     K    ++E
Sbjct: 490 EQMKMSVVKWKRVIPKLSATTRNEGKVLSAFELVHRYDLGKEDL-EMGLQDVKVDEKILE 548

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           RL+IE  Y     R   + +EI  E    IP + D+S +  +S E  EKL   +P NL  
Sbjct: 549 RLKIEGRYRMEHERMKAKKQEIDRESATEIPDNIDFSKMRGMSLECIEKLERARPRNLAA 608

Query: 595 ASKIEGMTPAALNLLLIYIK 614
           A++I G+TP A+ +L+ Y+K
Sbjct: 609 ATRISGITPEAIVVLMRYLK 628


>gi|156064023|ref|XP_001597933.1| hypothetical protein SS1G_00019 [Sclerotinia sclerotiorum 1980]
 gi|154690881|gb|EDN90619.1| hypothetical protein SS1G_00019 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 685

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/628 (44%), Positives = 389/628 (61%), Gaps = 10/628 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R YDV+VIGGGHAG EA A AA+ GA TALIT K   IG  SCNP+ GG+GKG ++RE+
Sbjct: 35  TRPYDVVVIGGGHAGAEACAGAARSGARTALITPKLENIGVCSCNPSFGGIGKGTMLREV 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DALDG+ GR+ D AG+QF+VLN KKGPAV GPR + DR+LY+  M+ E+ +  NL ++ G
Sbjct: 95  DALDGVAGRIIDKAGVQFKVLNRKKGPAVWGPRARVDRDLYKKHMREELEAYPNLSIVTG 154

Query: 123 EVAGFNT-------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            VA           +   I+ + ++   +I    VV+TTGTFL G IHIG    PAGRMG
Sbjct: 155 SVADIIVSKEEGETQNGKITGVRLESGEIIPTKQVVITTGTFLGGEIHIGLECYPAGRMG 214

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S     F  GRLKTGTP RL   +I +     Q  D+   PFS++   ++ 
Sbjct: 215 EAATFGLSKSLKDAGFTLGRLKTGTPPRLAKGSIDFKNLAVQPGDQPPTPFSYLNKTVSV 274

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+ C  T TN  +H ++  N+  S      +K  GPRYCPS+E K++RF +++ H ++
Sbjct: 275 QEQLLCHATYTNEASHAVVRANLDKSIHIRETVK--GPRYCPSLESKVIRFSDKDRHIVW 332

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LEPEG N+D++YPNGIS  +P E Q Q ++TIPGLE V +  PGY +EYDY++P+ L  T
Sbjct: 333 LEPEGFNSDIIYPNGISMTIPAEAQEQLLKTIPGLENVTMTAPGYGVEYDYVDPRSLKAT 392

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S  L  +  SR+D YIG+MIDD
Sbjct: 393 LETKAIQGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSLPQLVLSRSDGYIGIMIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L +KGV EPYRMFTSR+EYR+S R DNAD RLT  G   G +GE+R   F   + +   L
Sbjct: 453 LITKGVSEPYRMFTSRSEYRMSARADNADLRLTEKGRSAGVVGEKRWSAFNDEVAQMEGL 512

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           +  L     ++    +       D   R+A++ L   D +I +L +  P+   ++  + +
Sbjct: 513 KLALGKSTFSAPVWINDGFKVSNDSTMRSAFDVLRIRDVTINDLSTRIPEILTYTQRIRD 572

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           R+ IE+ YA Y  +Q    +  + +E   +P D DY S+  +S   K  L + +P ++ Q
Sbjct: 573 RVGIEAVYAPYVAQQKAAQRVFQKDEMLKLPVDLDYDSIYGISMHEKSVLKMTRPESVGQ 632

Query: 595 ASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           A +IEGMTP+    LL ++++ +  + +
Sbjct: 633 ARRIEGMTPSGCLRLLAFVRERSRAVQK 660


>gi|162147023|ref|YP_001601484.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|205831515|sp|A9HE13|MNMG_GLUDA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|161785600|emb|CAP55171.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme gid (Glucose-inhibited division protein A)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 620

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/619 (49%), Positives = 395/619 (63%), Gaps = 6/619 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIGGGHAGCEAAA AA+ GA T L+TH+  TIG+MSCNPAIGG+GKGHLVRE
Sbjct: 1   MTTEYDVIVIGGGHAGCEAAAAAARCGARTLLLTHRRDTIGAMSCNPAIGGIGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDALDGLM R AD AGI F++LN  KGPAV GPR QADR LYR A+Q  +    NLD+ +
Sbjct: 61  IDALDGLMARAADRAGIHFKLLNRSKGPAVHGPRAQADRSLYRRAIQDLLAETANLDIAE 120

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G       +     + +V +D    R   VVLT GTFLRGVIHIG    PAGR+G+ P++
Sbjct: 121 GAAGDLIVDDAGQAAGVVCEDGRQFRAGAVVLTAGTFLRGVIHIGHDSHPAGRVGEPPAH 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +L           GRLKTGTPARLD  +I WD   +   D    PFS +T  I N Q+ C
Sbjct: 181 ALGERLQALGLPMGRLKTGTPARLDRTSIDWDSLAEDRGDAVPEPFSRLTQAIDNPQLSC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE-- 298
            IT T   TH +I E++  SA+Y G I   GPRYCPSIEDK+VRF ER+ HQIFLEPE  
Sbjct: 241 RITATTPRTHALIREHLHLSAVYGGAIAGRGPRYCPSIEDKVVRFAERDSHQIFLEPEAL 300

Query: 299 --GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
                 D+VYPNGIST+LP +IQ Q I +IPGLE+  I+RPGYA+EYDY++P+ L PTLE
Sbjct: 301 PGNAGGDLVYPNGISTSLPADIQEQLIHSIPGLERCRIVRPGYAVEYDYVDPRALAPTLE 360

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
              +  LFLAGQINGTTGYEEA AQGL+AG+N+AR++   + I   R  +Y+GVMIDDL 
Sbjct: 361 LTALPRLFLAGQINGTTGYEEAGAQGLLAGLNAARRAGGGEGIAIDRGAAYLGVMIDDLA 420

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           ++GV EPYRMFTSRAEYR+SLR DNAD RLT  G+  GC+G  R   F       +    
Sbjct: 421 TQGVSEPYRMFTSRAEYRLSLRADNADLRLTGQGIGWGCVGSARAHLFTAERDAIDTAMQ 480

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
              +       L    I+   DG+ RT  + L+    +   +  I P      S V   +
Sbjct: 481 RAGAESFLPDALQQAGITVSADGRRRTLLDVLATA-ATPDAIARIAPWFAALPSRVSRHV 539

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E+ Y+ Y  RQ  E ++++ E +  +P D DY  +  LS+E++E+L+  +P +   A 
Sbjct: 540 ETEARYSGYLVRQAREIRQLEAETRITLPADLDYRRIGGLSSEMQERLAAARPASFSAAQ 599

Query: 597 KIEGMTPAALNLLLIYIKK 615
           ++ G+TP+AL  LL ++++
Sbjct: 600 RVPGITPSALMALLSHVRQ 618


>gi|326386156|ref|ZP_08207780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209381|gb|EGD60174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 614

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/615 (45%), Positives = 396/615 (64%), Gaps = 2/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DVIV+GGGHAG EAAAVAA++GA  AL++   + IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 2   QQFDVIVVGGGHAGVEAAAVAARMGARIALVSFDPAMIGAMSCNPAIGGLGKGHLVREVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG+M R ADA  I +R+LN  KG AV+GPR QADR  +R A+Q  I +Q+ L VI GE
Sbjct: 62  AFDGIMARAADAGAIHYRMLNRSKGSAVQGPRIQADRRRFRAAVQAAIAAQDGLTVIGGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E    + + + + + +  S VVL TGTFL G ++ G+ ++  GR+G++ ++ L 
Sbjct: 122 VVALQMEGGRAAGVELANGTCLGASAVVLCTGTFLGGRLYRGEERMEGGRIGEAAAHRLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                      RLKTGTP RLDG+TI W +  +Q +D      S +       Q+ CGI 
Sbjct: 182 QQLRDAALPMARLKTGTPPRLDGRTIDWGRLPEQPSDPEPWTMSPLGKGRVLPQVFCGIA 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN  TH II   +  S +++G I++ GPRYCPSIEDKI RFG+R+GHQIFLEPEGL+  
Sbjct: 242 RTNQRTHEIIRGGLDRSPLFTGAIEAQGPRYCPSIEDKIHRFGDRDGHQIFLEPEGLDDH 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LP ++Q   +R++ GLE+V +  PGYA+EYD+I+P+ L  +LE K I GL
Sbjct: 302 TVYPNGVSTSLPTDVQIAMMRSVEGLEQVEVTVPGYAVEYDHIDPRALRSSLEVKAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGTTGYEEAAAQGLVAG+++A +    +     R +SY+ VMIDDLT  GV EP
Sbjct: 362 FFAGQLNGTTGYEEAAAQGLVAGLHAAGQVLGREIPLLDRANSYMAVMIDDLTLHGVSEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA +RLTP+ +  GC+G  R++ FA+   E   +   L     
Sbjct: 422 YRMLTARAEYRLRLRANNAGSRLTPLALAAGCVGPERREWFARREAERARIDEALTQTA- 480

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T   L+   ++ + DG  R+  E+L +P+ ++  L            L+ E ++ +++YA
Sbjct: 481 TPNELTQAGMAVRADGARRSLGEWLRFPEVTLAGLSP-WLGEGAIDPLLAEEMEEDAAYA 539

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E ++++  E   +  DF ++ +P LS E+ E+L+  +P  L  A ++ G+TP
Sbjct: 540 PYLARQEAELRDLRASELVALGDDFPFADVPGLSREMVERLAQARPETLAAAGRVPGITP 599

Query: 604 AALNLLLIYIKKNTV 618
           AAL  LL++ ++   
Sbjct: 600 AALASLLVHARRRAA 614


>gi|253582573|ref|ZP_04859794.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium varium ATCC 27725]
 gi|251835443|gb|EES63983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium varium ATCC 27725]
          Length = 616

 Score =  641 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/599 (37%), Positives = 342/599 (57%), Gaps = 4/599 (0%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EA+  AA+LG  TA+ T    TI  MSCNP+IGG GK +LV E+D L G MGR  D   +
Sbjct: 19  EASLAAARLGKKTAMFTLYLDTIAMMSCNPSIGGPGKSNLVAEMDILGGEMGRHTDKFNL 78

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
           Q + LN  KGPA R  R QAD+ LYR  M++ +   +NL++IQ  V     E   I  I+
Sbjct: 79  QLKHLNESKGPAARITRGQADKYLYRTEMRKILEHTDNLEIIQDCVDEIIVENGRIKGII 138

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            +         VVL TGTFL+G I IG +   AGR G++ +  L +S  +      R +T
Sbjct: 139 TRLGIKYYAECVVLATGTFLKGKIVIGDVAYSAGRQGENSAEKLSDSLREHGITIERYQT 198

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
            TP RLD ++I + K ++   +E    FS  TDK  N  +   +T T  +T  +  E ++
Sbjct: 199 ATPPRLDKRSIDFSKMKELKGEEHPRYFSIFTDKERNNVVPTWLTYTTEKTIEVAKEMLQ 258

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           +S I SG IK++GPR+CPS++ K++ F +++ HQIFLE E   ++ VY NG++TA+P   
Sbjct: 259 YSPIVSGIIKTHGPRHCPSLDRKVINFPDKSNHQIFLELESAESEEVYVNGLTTAMPPFA 318

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE   ++R GYA+EYDY    +L+P+LE+KKI GL+ AGQINGT+GYEEA
Sbjct: 319 QEAMMRTIAGLENARVMRYGYAVEYDYAPAAQLYPSLESKKIEGLYFAGQINGTSGYEEA 378

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG +AG+N+ARK++  + +   R++ YIGV+IDD+  K   EPYR+  SR+EYR++LR
Sbjct: 379 ACQGFIAGVNAARKADGKEPVIIDRSEGYIGVLIDDIIHKKTPEPYRVLPSRSEYRLTLR 438

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNA  RL     ++G +   +       I+  N   + LK + +     ++       D
Sbjct: 439 FDNAFMRLFTKAKEIGILSSEKLDYLENSIKIVNDEIARLKEISVPMVQANALLEKLGSD 498

Query: 499 GKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKE 555
            K        + L   + +  +L  I  +   +   +  +++    Y  +  R+  + ++
Sbjct: 499 QKLTKGVKIGDLLKIKEVTYDSLKDIT-EINDYPGFIKNQIETMIKYEIFIQRENEQIEK 557

Query: 556 IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            K  E+  IP DFD+S +  +SN  +  L  +KP ++ +AS+I G+T   + LL+ Y+K
Sbjct: 558 FKRLEEVKIPADFDFSEVKGISNIARCGLEEIKPLSIGEASRISGVTGNDIALLVGYLK 616


>gi|301116049|ref|XP_002905753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Phytophthora infestans T30-4]
 gi|262109053|gb|EEY67105.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Phytophthora infestans T30-4]
          Length = 696

 Score =  641 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/620 (44%), Positives = 381/620 (61%), Gaps = 28/620 (4%)

Query: 25  AKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN 84
           ++ GA TAL+T K +TIG MSCNP+IGG+GKG LVRE+DA+ GLMG+VADAAGIQFR+LN
Sbjct: 49  SRTGAKTALVTQKLATIGEMSCNPSIGGVGKGTLVREVDAMGGLMGQVADAAGIQFRMLN 108

Query: 85  VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN---------IIS 135
             KGPAVRGPR Q DR+LY+  +Q+ +    NL +++  V     EK           + 
Sbjct: 109 SAKGPAVRGPRAQMDRDLYQQGIQKALQELPNLWLVEDGVDDLMLEKINQSNDDVEERVK 168

Query: 136 SIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMG------DSPSNSLFNSFMK 188
            +V      I+ S VV+TTGTFLRG+I+ G  ++IPAGR        + P+  L  +  +
Sbjct: 169 GVVTSSGREIQASQVVITTGTFLRGMIYQGPDIRIPAGRHMRDTAGLEPPAVGLAQTLER 228

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT----NRQIECGITR 244
             F  GRLKTGTP RLDG+TI +   E Q +D    PFSF+ +       ++Q+ C  T 
Sbjct: 229 CKFPLGRLKTGTPPRLDGRTIDYSDLEVQPSDNPPKPFSFLNEHKQVPLADKQVVCHATY 288

Query: 245 TNLETHRIIMENIKHSAIY--SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           TN ++HRI+ +N+     Y    D +  GPRYCPSI+ K+VRF +R+ HQ++LEPEGLNT
Sbjct: 289 TNEDSHRIVRDNLHMLPQYDGGRDGEGVGPRYCPSIDVKVVRFADRSRHQLWLEPEGLNT 348

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            +VYPNGISTALPE +Q + +RTI GL+KV IIR GY++EYDY++P+ L PTLETKK+SG
Sbjct: 349 HLVYPNGISTALPENLQLELLRTIKGLKKVEIIRAGYSVEYDYVDPRSLHPTLETKKLSG 408

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQG+VAG+N+   +   + +   R D++ GV+IDDL S G  E
Sbjct: 409 LFLAGQINGTTGYEEAAAQGVVAGMNAGLSAMGREPLILDRADAFTGVLIDDLISLGTTE 468

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC-IGERRQKRFAKYIQEYNFLRSLLKSL 481
           PYRMFTSR+E+R+ LR DNAD RLT    + G  I   R ++  +  +   + R  L   
Sbjct: 469 PYRMFTSRSEFRLLLRADNADLRLTRKAFEHGAGIPSERMEKLERKEKAMEYARQALDEF 528

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC-----PDARKFSSLVIERL 536
           V      +   +    DG  R+A + L++   + Q++  +        A      + E +
Sbjct: 529 VRDPHEWNRYGVKVGLDGVKRSAAQILAFSTVTPQDIERLWRQVGYEHADALPDEIKEFM 588

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E  YA     Q  E +  + ++   IP+  DYS LP +SNE +EKL   +P  +  AS
Sbjct: 589 KTECLYATQLRAQHQEIRVFRNKQHVQIPEWVDYSELPMISNEEREKLQQAQPATIHAAS 648

Query: 597 KIEGMTPAALNLLLIYIKKN 616
           +I G+  A L LL  Y  + 
Sbjct: 649 RIAGIRSATLLLLYQYAMRQ 668


>gi|241762351|ref|ZP_04760431.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373145|gb|EER62784.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 621

 Score =  641 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/603 (46%), Positives = 392/603 (65%), Gaps = 2/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++   +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVR
Sbjct: 6   VMKEFFDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVR 65

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+Q  +  Q +L +I
Sbjct: 66  EIDAWDGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQTALKEQAHLTII 125

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G    F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS 
Sbjct: 126 EGMAESFQMDKGKVKAVLLADGRSLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSI 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L       D   GRLKTGTPARLDG+TI W + ++Q +DE     +         QI C
Sbjct: 186 GLAEQLKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGTGRVAPQIAC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TR+N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL
Sbjct: 246 SLTRSNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T ++YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K +
Sbjct: 306 DTPLIYPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKAL 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            G+F AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGV+IDDL  +GV
Sbjct: 366 KGVFCAGQINGTTGYEEAAAQGLVAGISAACAVAGKAPPVFDRRNSYIGVIIDDLVLQGV 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+ 
Sbjct: 426 TEPYRMLTARAEYRLGLRADNAVTRLSGQAKAFGALGTEMTDFVTKRLAEREKCQKLLEK 485

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              +S+++ +   +   +G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  + 
Sbjct: 486 -AASSRDMQAVGANV-TEGASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDG 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +   +   +P + DY+++  LSNE+ EK S  +P ++  AS++ G
Sbjct: 544 RYAPYLERQDAELARLAGHDNMPLPAELDYATIAGLSNEMVEKFSAARPPDMASASRVRG 603

Query: 601 MTP 603
           +TP
Sbjct: 604 VTP 606


>gi|260940192|ref|XP_002614396.1| hypothetical protein CLUG_05882 [Clavispora lusitaniae ATCC 42720]
 gi|238852290|gb|EEQ41754.1| hypothetical protein CLUG_05882 [Clavispora lusitaniae ATCC 42720]
          Length = 677

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/633 (42%), Positives = 401/633 (63%), Gaps = 20/633 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV+GGGHAGCEAA  +A+ GA+T L+T   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 31  VIVVGGGHAGCEAATASARAGAATTLVTPHVNKIGTASCNPSMGGVGKGTLLREVDALDG 90

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  RV D AGI F+ LN  KG AV+GPR Q DR++Y   MQR I+S  NL V++  V   
Sbjct: 91  VAPRVTDKAGIHFKTLNASKGAAVQGPRAQIDRDIYLREMQRTIMSYPNLQVLEASVEDV 150

Query: 128 NTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 K  +  +V+ D S++RC+ VVLTTGTFL G IHIG    P+GR+G++ +  L  
Sbjct: 151 VIAEGPKPEVRGVVLGDGSVLRCNQVVLTTGTFLGGEIHIGMTAYPSGRIGEAATTGLSR 210

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECGI 242
           +  +  F  GRLKTGTP RL  KTI +     Q +D    P S++ +++   +R +EC  
Sbjct: 211 TLKQAGFRLGRLKTGTPPRLSSKTIDYRGLAPQPSDMPPQPMSYLNERVELEDRLVECHQ 270

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T  + H+++ +N+  S      +K  GPRYCPSIE K++RF +++ H ++LEPEGL+ 
Sbjct: 271 TATTPQFHQLVRDNLHQSIHIRETVK--GPRYCPSIESKVIRFPQKDMHVVWLEPEGLDC 328

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D+VYPNGIS  +PE IQ Q +R +PG E V +++PGY +EYDY++P+EL  TLETK+++G
Sbjct: 329 DIVYPNGISCTMPENIQEQLVRMMPGCENVVMLQPGYGVEYDYVDPRELHRTLETKRVAG 388

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LFLAGQINGTTGYEEAAAQG +AGIN+   +     +   R+D+YIGV++DDL +KGV E
Sbjct: 389 LFLAGQINGTTGYEEAAAQGCLAGINAGLANVGRSPLVLRRSDAYIGVLVDDLITKGVEE 448

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYRMFTSR+E+R S+R DNAD RLT +G + G + E+R + FAK   ++  ++S LKS+ 
Sbjct: 449 PYRMFTSRSEFRFSIRADNADKRLTEMGYRAGVVSEQRYRHFAKQHDQFQAVKSHLKSIS 508

Query: 483 LTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA---------RKFSSL 531
           ++    +          +      ++ LSY D  + +L                ++ S  
Sbjct: 509 MSGARWAPALRGTHRVNNISVVDGWKLLSYKDMHLADLVPHLEKLTGAPLPDCYQEMSRW 568

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA--LSNELKEKLSILKP 589
           + +R+ +E++Y  +  ++    K  + +E  L+P D+ Y++     LS+E+   L+ ++P
Sbjct: 569 LTQRIDVEATYEPWLKKEEAHLKAFEADENLLLPMDYTYTNTGNVKLSHEVCHLLNTIQP 628

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
             + QA +I+G+TPAAL  L   ++ N  +  E
Sbjct: 629 RTIGQARRIQGVTPAALFELFKLVRNNQAEYQE 661


>gi|257470413|ref|ZP_05634504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064621|ref|ZP_07929106.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium ulcerans ATCC 49185]
 gi|313690297|gb|EFS27132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG 1
           [Fusobacterium ulcerans ATCC 49185]
          Length = 616

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/599 (37%), Positives = 342/599 (57%), Gaps = 4/599 (0%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EA+  AA+LG  TA+ T    TI  MSCNP+IGG GK +LV E+D L G MGR  D   +
Sbjct: 19  EASLAAARLGKKTAMFTLYLDTIAMMSCNPSIGGPGKSNLVAEMDILGGEMGRHTDKFNL 78

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
           Q + LN  KGPA R  R QAD+ LYR  M++ +   +NL++IQ  V     E   +  I+
Sbjct: 79  QLKHLNESKGPAARITRGQADKYLYRTEMRKLLEHTDNLEIIQDCVDEIIVEDGKVKGII 138

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            +         VVL TGTFL+G I IG +   AGR G++ +  L +S  +      R +T
Sbjct: 139 TRLGIKYYAQCVVLATGTFLKGKIVIGDVAYSAGRQGENSAEKLSDSLREHGITIERYQT 198

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
            TP RLD ++I + K ++   +E    FS  TDK  N  I   +T T  +T  +  E ++
Sbjct: 199 ATPPRLDKRSIDFSKMKELKGEEYPRYFSIFTDKERNNVIPTWLTYTTEKTIEVAKEMLQ 258

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
           +S I SG IK++GPR+CPS++ K++ F +++ HQIFLE E   ++ VY NG++TA+P   
Sbjct: 259 YSPIVSGIIKTHGPRHCPSLDRKVINFPDKSNHQIFLELESAESEEVYVNGLTTAMPPFA 318

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q   +RTI GLE   ++R GYA+EYDY    +L+P+LE+KK+ GL+ AGQINGT+GYEEA
Sbjct: 319 QEAMMRTIAGLENARVMRYGYAVEYDYAPAAQLYPSLESKKVEGLYFAGQINGTSGYEEA 378

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           A QG +AG+N+ARK++  + +   R++ YIGV+IDD+  K   EPYR+  SR+EYR++LR
Sbjct: 379 ACQGFIAGVNAARKADGKEPVIIDRSEGYIGVLIDDIIHKKTPEPYRVLPSRSEYRLTLR 438

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            DNA  RL     ++G +   +       I+  N   + LK + +     ++       D
Sbjct: 439 FDNAFMRLFTKAKEIGILSSEKLDYLENSIKIVNDEIARLKEISVPMVQANALLEKLGSD 498

Query: 499 GKTRTAY---EFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKE 555
            K        + L   + +  +L  I  +   +   +  +++    Y  +  R+  + ++
Sbjct: 499 QKLTKGVKIGDLLKIKEVTYDSLKDIT-EISDYPGFIKNQIETMIKYEIFIQRENEQIEK 557

Query: 556 IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            K  E+  IP DFD+S +  +SN  +  L  +KP ++ +AS+I G+T   + LL+ Y+K
Sbjct: 558 FKRLEEVRIPADFDFSEVKGISNIARCGLEEIKPLSIGEASRISGVTGNDIALLVGYLK 616


>gi|193216990|ref|YP_002000232.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma arthritidis 158L3-1]
 gi|254811515|sp|B3PNC6|MNMG_MYCA5 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|193002313|gb|ACF07528.1| glucose-inhibited division protein A [Mycoplasma arthritidis
           158L3-1]
          Length = 607

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/616 (39%), Positives = 356/616 (57%), Gaps = 10/616 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YD IVIGGGHAG EAA   AK   + ALIT   + +  + CNP+IGG  KG + RE
Sbjct: 1   MNKTYDAIVIGGGHAGIEAAYALAKRAFNVALITLNINRLAMLPCNPSIGGSAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN  KGPAV   R Q D+E Y   +  +I  Q N+ +I+
Sbjct: 61  IDALGGMQGYFADLAMIQIKMLNTSKGPAVWSLRAQIDKEKYCQIILDDIKKQSNITLIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV      +N    +V ++N  I    VV+TTG ++   I  G      G  G+  S+S
Sbjct: 121 DEVVDLIVNENQCHGVVTKENGNISAKVVVMTTGVYMNSRILRGTDIKYDGPDGEKTSSS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  + MK+ F+  RLKTGTP R+   +I + K EK+  D+  + FS  ++   + Q  C 
Sbjct: 181 LSKNLMKYGFEILRLKTGTPCRIYTDSIDFSKVEKEQLDKNELSFSSHSNVKLDEQTCCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T  +T  II+ N+  S++YSG I   GPRYCPS+EDKIVRF E+  H IF EPE   
Sbjct: 241 LTHTTAKTKEIILNNLDKSSLYSGIIIGIGPRYCPSVEDKIVRFQEKETHHIFFEPETAK 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D++Y NG+ST++PE +Q Q I +IPGLEK  + + GYAIEYD INP  L+ +LE+K +S
Sbjct: 301 GDIMYINGLSTSMPESVQDQMIASIPGLEKARVQKYGYAIEYDAINPLNLYKSLESKTLS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQ NGT+GYEEAAAQGL+AGIN+A K +K+  +   R+ +YIGV+IDD+ +KG  
Sbjct: 361 NFFSAGQPNGTSGYEEAAAQGLIAGINAANKLDKMPMMEIKRSSAYIGVLIDDIVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAEYR+ LR DN D RL+    +   I  +   +     +  N     LK  
Sbjct: 421 EPYRMLTSRAEYRLLLRNDNVDERLSQYAFENKMISAQSYNKVLDKYKLINNEIQKLKDE 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++S +  +   +        +  + L+ P    +++  +  D           + I+  
Sbjct: 481 YVSSNSELAKKYNV---TSGVSKLKLLANPAVDPKDI--LGNDFPYLDE-----ITIQVR 530

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
              Y  +Q   A+++   EK  +P D DY+ +  L+ E ++KL+ +KP  + QAS+I G+
Sbjct: 531 LFGYLKKQESAAEKMFRLEKLKLPIDLDYNLVENLATEARQKLNQIKPTTIGQASRISGI 590

Query: 602 TPAALNLLLIYIKKNT 617
            PA + +L+ Y+    
Sbjct: 591 NPADIQMLMYYLNNRK 606


>gi|269115303|ref|YP_003303066.1| glucose inhibited division protein A [Mycoplasma hominis]
 gi|268322928|emb|CAX37663.1| Glucose inhibited division protein A [Mycoplasma hominis ATCC
           23114]
          Length = 606

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/612 (39%), Positives = 353/612 (57%), Gaps = 10/612 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++D IVIGGGHAG EA    AK     AL+T   + +  + CNP+IGG  KG + RE
Sbjct: 1   MTNNFDAIVIGGGHAGIEATYALAKRNFKVALVTLNINRLAMLPCNPSIGGSAKGIITRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+ G  AD A IQ ++LN  KGPAV   R Q D+E Y   + ++I  Q+N+ +IQ
Sbjct: 61  IDALGGVQGFFADNAMIQIKMLNTSKGPAVWSLRAQIDKEKYSEIILKDIEKQKNITLIQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E +    E      I   ++  +    V++TTG ++   I  G+     G  G+  S++
Sbjct: 121 DEASDLIVEDGTCVGIETLEHGKLYSKVVIMTTGVYMNSRILRGENIKYDGPDGEKTSST 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  K+ F+  RLKTGTP R+   +I + K EK+  ++  + FS  ++K  + Q  C 
Sbjct: 181 LSKNLKKYGFEIIRLKTGTPCRIYTDSIDFSKVEKEVLEKNELCFSSRSNKKLDEQTCCY 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T T L+T  II++N+K S++YSG I   GPRYCPS+EDKIVRF E++ H IF EPE   
Sbjct: 241 LTHTTLKTKEIILKNLKRSSLYSGIIIGIGPRYCPSVEDKIVRFQEKDTHHIFFEPETAR 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D++Y NG+ST++PE++Q + I +IPGLE   + + GYAIEYD INP  L+ +LE+K + 
Sbjct: 301 GDIMYINGLSTSMPEDVQDEMIASIPGLEHARVQKYGYAIEYDAINPLNLYKSLESKILK 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQ NGT+GYEEAAAQGL+AGIN+A K + L+ +   R D YIGV+IDD+ +KG  
Sbjct: 361 NFFSAGQPNGTSGYEEAAAQGLIAGINAANKLDNLEPLIIKRNDGYIGVLIDDIVTKGTN 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM TSRAE+R+ LR DN D RL         I +    R  +  +        LK+ 
Sbjct: 421 EPYRMLTSRAEFRLLLRNDNVDERLYKYAYDNKMISKEEHDRIEEKYKIIAETVEKLKNE 480

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            ++SK  S     +       +  + LS P+    ++         F    I+ + I+  
Sbjct: 481 YVSSK--SDVGQKYNV-TNGMSYLKLLSNPEVDPVDILG-----SNFPY--IDEITIQVR 530

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
              Y  +Q   A ++   E+  +PKD DY S+  L+ E ++KL  ++P  + QA++I G+
Sbjct: 531 LYGYLKKQESAADKMLRLEQLKLPKDIDYWSVDNLATEARQKLDKIRPETIGQAARISGI 590

Query: 602 TPAALNLLLIYI 613
            PA + +L+ Y+
Sbjct: 591 NPADIQMLIFYL 602


>gi|302406004|ref|XP_003000838.1| mitochondrial translation optimization protein [Verticillium
           albo-atrum VaMs.102]
 gi|261360096|gb|EEY22524.1| mitochondrial translation optimization protein [Verticillium
           albo-atrum VaMs.102]
          Length = 693

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/595 (42%), Positives = 367/595 (61%), Gaps = 12/595 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K   +G+ SCNP+ GG+GKG ++RE+DALDGL GRV D AGI F+ LN +KGPAV 
Sbjct: 72  LVTPKIDNLGTCSCNPSFGGIGKGVIIRELDALDGLSGRVIDKAGIHFQTLNRRKGPAVW 131

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF---------NTEKNIISSIVMQDNS 143
           GPR Q DR+LY+  M+ E+    NL +I G V+               + I+ + +    
Sbjct: 132 GPRAQIDRDLYKKHMREELEGYPNLSIILGSVSDVVLCPQEDPTIGAHSRITGVKLDSGE 191

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           ++  + V++TTGTFL G IHIG    PAGR+G++ +  L  S     F  GRLKTGTP R
Sbjct: 192 ILPTTQVIITTGTFLSGEIHIGMESYPAGRIGEAATTGLSKSLRDAGFSMGRLKTGTPPR 251

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAI 262
           + GK+I + + + Q  ++   PFS+M D + T++QI+C +T TN  TH I+  N+ ++  
Sbjct: 252 ISGKSIDFSELQPQPGEQSPTPFSYMNDTVATDKQIDCYVTYTNATTHDIVRANLGNTIH 311

Query: 263 YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
               +   GPRYCPS+E KI RF ++  H ++LEPEG   DVVYPNG+S  +P E Q Q 
Sbjct: 312 IRETVL--GPRYCPSLESKITRFSDKERHIVWLEPEGFVNDVVYPNGLSMTVPPEAQEQI 369

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           IR+I G+E   +++ GY +EYDYI+P+ L  +LETK +SGL+LAGQINGTTGYEEAA QG
Sbjct: 370 IRSIKGMENAELLQVGYGVEYDYIDPRSLKSSLETKPVSGLYLAGQINGTTGYEEAAGQG 429

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AGIN+ R +  L  +  SR D YIGVMIDDL +KGV EPYRMFT+R+EYR++ R DNA
Sbjct: 430 VIAGINAGRAAKGLAAVSLSRGDGYIGVMIDDLVTKGVSEPYRMFTTRSEYRLTSRADNA 489

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR 502
           D RLT  G   G + + R + F+    + + L SLL+S V + +         K++ + R
Sbjct: 490 DYRLTAKGRDWGVVSDARWRAFSDEKMQVDELYSLLESAVKSPQEWMRHGFQVKENSQRR 549

Query: 503 TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
            A E L  P+ ++  + ++ P  ++F   +  R+ IE+ YA    RQ  E +    +E  
Sbjct: 550 DACEMLRLPNVTMDEIATVLPVVQRFPERIKSRVAIEALYAPMIARQTSERRNFTRDESL 609

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            +P + DY  +  L+   K+ L   +P  L QA ++EG+TP+    LL +I++ +
Sbjct: 610 RLPANLDYDKVAGLAMHEKQILKTTRPETLAQARRLEGITPSGCIRLLSFIQRQS 664


>gi|282850776|ref|ZP_06260151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 224-1]
 gi|282558184|gb|EFB63771.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus gasseri 224-1]
          Length = 566

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/553 (42%), Positives = 320/553 (57%), Gaps = 5/553 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVIV+G GHAG EAA  AA++G  T L+T     +  M CNP++GG  KG +VREI
Sbjct: 6   SNEYDVIVVGAGHAGVEAALAAARMGEKTLLLTINLDMVAFMPCNPSVGGPAKGTVVREI 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G MG+  DA  IQ R+LN  KGPAVR  R QAD+  Y   M+  I ++ NL + Q 
Sbjct: 66  DALGGEMGKNIDATYIQMRMLNTGKGPAVRALRAQADKWQYHEHMKDTIENEPNLTLRQA 125

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                  E      ++    +     +VVLTTGT  RG I IG+L   +G     PS  L
Sbjct: 126 VADELIVEDGACKGLITNTGAKYHAKSVVLTTGTAARGKIIIGELTYSSGPNNSLPSIKL 185

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--ITNRQIEC 240
             +  K  F   R KTGTP R+DG T+ + KT+++  D++   FS+ +        Q+ C
Sbjct: 186 PENLEKLGFKLRRFKTGTPPRVDGNTVDYSKTQEEPGDKKPRHFSYTSKDSDYLKDQMSC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN  TH II  N+  + ++SG IK  GPRYCPSIEDK+VRF +++ HQIFLEPEG 
Sbjct: 246 YMTYTNTVTHDIIRANLDRAPMFSGVIKGVGPRYCPSIEDKVVRFADKDRHQIFLEPEGR 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NT  +Y    ST++PEE+Q + + ++ GLEK  ++RPGYAIEYD I P +L  TLETK I
Sbjct: 306 NTKEIYVGAFSTSMPEEVQLKMLHSVAGLEKAELMRPGYAIEYDVIEPWQLKHTLETKNI 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             LF AGQ+NGT+GYEEAA QGL+AGIN+A  +         R ++YIGV+IDDL +KG 
Sbjct: 366 KHLFTAGQMNGTSGYEEAAGQGLIAGINAALSAQNKPGFTLQRDEAYIGVLIDDLVTKGT 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYR+ TSRAEYR+ LR DNAD RLT  G +LG I E R  +F    Q  +   + +K 
Sbjct: 426 NEPYRLLTSRAEYRLLLRHDNADLRLTEKGHELGLISEERYAKFEAKKQAISRAMAAIKK 485

Query: 481 LVLTS-KNLSSTSISFKQD--GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + +     +     S KQD      +  +FL  P  +   +  +          V E+++
Sbjct: 486 VTIHPTDEVQEYLASVKQDRLNAGVSGADFLKRPRVTFDAVEKLSGQTLATDRYVKEQVE 545

Query: 538 IESSYAAYTGRQM 550
           I   Y  Y  ++ 
Sbjct: 546 IALKYEGYIKKKR 558


>gi|260753423|ref|YP_003226316.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552786|gb|ACV75732.1| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 621

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/603 (46%), Positives = 393/603 (65%), Gaps = 2/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++   +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVR
Sbjct: 6   VMKEFFDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVR 65

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+QR +  Q +L +I
Sbjct: 66  EIDAWDGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQRALKEQAHLTII 125

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G    F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS 
Sbjct: 126 EGMAESFQMDKGKVKAVLLADGRSLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSI 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L       D   GRLKTGTPARLDG+TI W + ++Q +DE     +         QI C
Sbjct: 186 GLAEQLKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGTGRVAPQIAC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TR+N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL
Sbjct: 246 SLTRSNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T ++YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K +
Sbjct: 306 DTPLIYPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKAM 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            G+F AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGVMIDDL  +GV
Sbjct: 366 KGVFCAGQINGTTGYEEAAAQGLVAGISAACAVAGKTSPVFDRRNSYIGVMIDDLVLQGV 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+ 
Sbjct: 426 TEPYRMLTARAEYRLGLRADNAVTRLSGQAKAFGALGAEMTAFVTKRLAEREKCQKLLEK 485

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              +S+++ +   +   +G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  + 
Sbjct: 486 -AASSRDMQAVGANV-TEGASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDG 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +   +   +P + DY+++  LSNE+ E+ S  +P ++  AS++ G
Sbjct: 544 RYAPYLERQDAELARLAGHDNMPLPAELDYAAIAGLSNEMVERFSAARPPDMASASRVRG 603

Query: 601 MTP 603
           +TP
Sbjct: 604 VTP 606


>gi|161611314|ref|YP_163716.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495074|sp|Q5NL05|MNMG_ZYMMO RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|283775607|gb|AAV90605.2| glucose inhibited division protein A [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 621

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/603 (46%), Positives = 391/603 (64%), Gaps = 2/603 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++   +D++VIGGGHAGCEAAAVAA++GA TAL+T  +  IG+MSCNPAIGGLGKGHLVR
Sbjct: 6   VMKEFFDIVVIGGGHAGCEAAAVAARMGAKTALVTMDSEQIGAMSCNPAIGGLGKGHLVR 65

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA DGLM   AD A I +R+LN  KG AV+GPR QADR  Y+ A+Q  +  Q +L +I
Sbjct: 66  EIDAWDGLMPHAADYAAIHYRMLNRSKGSAVQGPRIQADRNRYKKAIQTALKEQAHLTII 125

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G    F  +K  + ++++ D   ++  +VVLTTGTFL   +  G+ K   GR+G+ PS 
Sbjct: 126 EGMAESFQMDKGKVKAVLLADGRPLKTESVVLTTGTFLDAWLFCGEKKWRGGRIGEQPSI 185

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L       D   GRLKTGTPARLDG+TI W + ++Q +DE     +         QI C
Sbjct: 186 GLAEQLKALDLPLGRLKTGTPARLDGRTIDWARLQRQPSDEDAWTMASYGAGRVAPQIAC 245

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +TR+N +TH II   +  S ++SG I+  GPRYCPSIEDKI++FG+R+GHQIFLEPEGL
Sbjct: 246 SLTRSNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMKFGDRDGHQIFLEPEGL 305

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +T ++YPNGIST+LPE++Q  FI +I GLE   I++ GYA+EY++I+P+ L   LE K +
Sbjct: 306 DTPLIYPNGISTSLPEDVQQAFINSIEGLENTKIVQFGYAVEYEFIDPRSLTHQLELKAL 365

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +F AGQINGTTGYEEAAAQGLVAGI++A          F R +SYIGVMIDDL  +GV
Sbjct: 366 KSVFCAGQINGTTGYEEAAAQGLVAGISAACAVAGKAPPVFDRRNSYIGVMIDDLVLQGV 425

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRM T+RAEYR+ LR DNA  RL+      G +G        K + E    + LL+ 
Sbjct: 426 TEPYRMLTARAEYRLGLRADNAVTRLSGQAKAFGALGAEMTDFVTKRLAEREKCQKLLEK 485

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
              +S+++ +   +   +G + + +E+L +P  + Q+L ++ P+  +FS  V+  +  + 
Sbjct: 486 -AASSRDMQAVGANV-TEGASHSLFEWLRFPAVTRQHLEALIPELTEFSDAVVSEIIDDG 543

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            YA Y  RQ  E   +   +   +P + DY+++  LSNE+ EK S  +P ++  AS++ G
Sbjct: 544 RYAPYLERQDAELARLAGHDNMPLPAELDYATIAGLSNEMVEKFSAARPPDMASASRVRG 603

Query: 601 MTP 603
           +TP
Sbjct: 604 VTP 606


>gi|332297240|ref|YP_004439162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema brennaborense DSM 12168]
 gi|332180343|gb|AEE16031.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema brennaborense DSM 12168]
          Length = 627

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/647 (40%), Positives = 364/647 (56%), Gaps = 89/647 (13%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
            EAA  A+++G  T L+T    +IG MSCNP+IGG+ KG++VREIDAL G MGR+ D + 
Sbjct: 20  IEAALAASRMGLKTLLVTQTIDSIGRMSCNPSIGGIAKGNIVREIDALGGEMGRLIDKSM 79

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT-------- 129
           IQFR+LN  +GPAV+ PR QAD+ LY    +  + S  NL V+Q  V             
Sbjct: 80  IQFRLLNRSRGPAVQAPRAQADKLLYAQLARHTLESAPNLSVLQDTVVDIEAAESVASLP 139

Query: 130 ----------------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                                  +  IS++V +    I     VLTTGTFL G I IG  
Sbjct: 140 PDSSGISEPGSLPGETRGGGASMRQKISALVTERGRRIPVRAAVLTTGTFLGGRIFIGAY 199

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P GR+G+  +  L  +  K  F TGRLKTGTP R+   +I +   E Q  D  +IPFS
Sbjct: 200 DAPCGRLGEQGAFGLTQALNKLGFTTGRLKTGTPPRVLKSSIDFSVLELQQGDLDVIPFS 259

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F T +I    + C +  TN ETHRII ENI  S +YSG I   GPRYCPSIEDK++RF E
Sbjct: 260 FDTKQIDRPMVPCHLVYTNTETHRIIRENISKSPLYSGKISGIGPRYCPSIEDKVMRFAE 319

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R  HQ+F+EPEGL TD +Y NG S++LPE++Q  F+RT+PG     + RPGYA+EYD+I+
Sbjct: 320 RERHQLFVEPEGLTTDEMYINGFSSSLPEDVQDSFLRTLPGFADAVVSRPGYAVEYDFID 379

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN------------- 394
           P +LFP+LETK ++GLF AGQINGT+GYEEAA QGLVAGIN+A  +              
Sbjct: 380 PTQLFPSLETKPVAGLFTAGQINGTSGYEEAAGQGLVAGINAALYAKAHALLCGPFPCHP 439

Query: 395 -------KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
                    + +  SR+++YIGV+IDDL + G  EPYRMFT+RAEYR+ LR D AD RL 
Sbjct: 440 DRRADIPSYEPLVLSRSEAYIGVLIDDLVTLGTKEPYRMFTARAEYRLKLRHDTADRRLC 499

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
             G   G   + R +   + I+  + + +LL      ++N ++                 
Sbjct: 500 GKGFAAGLNSQSRYEAVLEKIRMEDEILALL------ARNPAA----------------- 536

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
                           D   + + + E  Q++  Y  Y  +Q    +++K  +   IP +
Sbjct: 537 ----------------DNPGYPAALWEEAQVDFKYKHYIEKQDKRVEKLKRMDTARIPDN 580

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           FDY+++P+LS E ++KL  ++P  L QAS+I G+  + + LL++Y+K
Sbjct: 581 FDYAAIPSLSAESRQKLEKIRPLTLGQASRISGIRNSDIMLLMVYLK 627


>gi|255729512|ref|XP_002549681.1| hypothetical protein CTRG_03978 [Candida tropicalis MYA-3404]
 gi|240132750|gb|EER32307.1| hypothetical protein CTRG_03978 [Candida tropicalis MYA-3404]
          Length = 684

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/645 (41%), Positives = 387/645 (60%), Gaps = 30/645 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV+GGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 40  VIVVGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDALDG 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V   
Sbjct: 100 VSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVEDI 159

Query: 128 NTEKN-------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             E               I+  +++ D  +++   VV+TTGTFL G IHIG    P+GR+
Sbjct: 160 IIEPKLNNEGDYAGRTFGIVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKAYPSGRI 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  +     F  GRLKTGTP RL  KTI +    +Q +D    P S+M DK+ 
Sbjct: 220 GEEATFGLSKTLRDAGFRLGRLKTGTPPRLSAKTINFKGLIEQPSDFPPQPMSYMNDKVA 279

Query: 235 NRQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ H 
Sbjct: 280 LEDQLVKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDFHY 337

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL+TD++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+EL 
Sbjct: 338 VWLEPEGLDTDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRELK 397

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK + GLFLAGQINGTTGYEEAAAQG VAGIN+     K   +   R D  + +MI
Sbjct: 398 MTLETKLVDGLFLAGQINGTTGYEEAAAQGCVAGINAGLSYMKKPALDLRRPDGLMAIMI 457

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R S+R DNAD RLT  G +LG +GE R K + +   ++ 
Sbjct: 458 DDLITKGVEEPYRMFTSRSEFRFSIRSDNADFRLTERGYQLGVVGEDRYKHYKEESNQFE 517

Query: 473 FLRSLLKSLVLTSKNLSSTSISF---KQDGKTRTAYEFLSYPDFSIQNLFSICP------ 523
            +++ L  L L  +  +          +D    + ++ L+YP  SI  L           
Sbjct: 518 DIKNTLSELKLIGRYWAPALEGVTYDARDDVKVSGWKLLAYPGMSINCLLPHMSKFMNKV 577

Query: 524 --DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNE 579
                  S  +  ++ +ES Y  +  R+    ++ +  +K ++P++F+Y++   L  S+E
Sbjct: 578 PNSFDNISERLRNKIDVESDYEPFRTRERRNIEKFEDYDKFILPQNFNYTNTGNLKISHE 637

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           +   L++++P  L QA K+ G+TP A+  L    K  T    EI 
Sbjct: 638 VCSILNVIQPSTLGQAMKLRGVTPTAIMELRKIAKLGTSSNKEIA 682


>gi|255717599|ref|XP_002555080.1| KLTH0G00924p [Lachancea thermotolerans]
 gi|238936464|emb|CAR24643.1| KLTH0G00924p [Lachancea thermotolerans]
          Length = 682

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/613 (42%), Positives = 382/613 (62%), Gaps = 24/613 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+T     IG+ SCNP++GG+GKG L+RE+DALDG+  +V D AGIQF++LN  +G 
Sbjct: 64  PTVLVTPFLDKIGTCSCNPSMGGVGKGTLLREVDALDGVAPKVTDLAGIQFKMLNRSRGA 123

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-------------ISS 136
           AV GPR Q DRE+Y   MQ+ + S  NL + QG+V     ++ +             +  
Sbjct: 124 AVWGPRAQIDREIYLREMQKVLKSYANLTLYQGKVQDLVIDRQVAGEGKDSHQKHSTVVG 183

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRL 196
           ++++D ++++ S VV+TTGTFL   IHIG   IPAGR+G+  S  L  +  +  F  GRL
Sbjct: 184 VILEDGTLLKASKVVITTGTFLSAEIHIGAKSIPAGRIGEGASYGLSKTLDEAGFKLGRL 243

Query: 197 KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIME 255
           KTGTPARLDG+TI ++  EKQ+ D    P SFM + +    Q+ C  T T  E H  +  
Sbjct: 244 KTGTPARLDGRTINFESLEKQYGDTPPNPMSFMNEDVAIKDQVLCYGTHTTPEVHEYLRS 303

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           N+  +      IK  GPRYCPSIE KI+RF +++ H+I+LEPEGL++ VVYPNGIS ++P
Sbjct: 304 NLHQAPHIRETIK--GPRYCPSIEAKIIRFADKSSHRIWLEPEGLDSHVVYPNGISNSMP 361

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           E +Q +F+R IPGLE+V I++P Y +EYDYI+P+ L  +LE K + GL+LAGQINGTTGY
Sbjct: 362 ENVQLKFMRMIPGLEQVEILQPAYGVEYDYIDPRSLAKSLEAKPVKGLYLAGQINGTTGY 421

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEA AQG+ AGIN+         +   R+D+Y+GV+IDDL +KGV EPYRMFTSR+E+RI
Sbjct: 422 EEACAQGIFAGINAGLAHQGKPPLEILRSDAYLGVLIDDLITKGVEEPYRMFTSRSEFRI 481

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS-STSIS 494
           S+R DNAD RLTP+G   G + + R   +      Y+ + + L +  L++K  + S  + 
Sbjct: 482 SVRADNADFRLTPLGHAAGVVSDNRYASYINQKALYSEIVTKLLNFELSAKRWNGSLGVP 541

Query: 495 FKQDGKTRTAYEFLSYPDFSIQNLFSICPDA----RKFSSLVIERLQIESSYAAYTGRQM 550
                K R+A+E L +    +  L    P+      +    V+ ++ +E  YA +  +Q 
Sbjct: 542 VADGAKNRSAWEMLRFNGIDLNTLGDKFPELGIDPSQIPKHVLLKIDVEGKYAPFIKKQN 601

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
              K  + +E  L+P +FDYS LP+LS+E K  L++++P  + QA +I+G+TPA+L  L 
Sbjct: 602 QFIKAFQADEGMLLPPNFDYSILPSLSSECKTILNLVQPSTIGQARRIQGITPASLFELY 661

Query: 611 IYIKKNTVKLNEI 623
             ++    K N++
Sbjct: 662 KLVR---FKQNDL 671


>gi|71020637|ref|XP_760549.1| hypothetical protein UM04402.1 [Ustilago maydis 521]
 gi|46100437|gb|EAK85670.1| hypothetical protein UM04402.1 [Ustilago maydis 521]
          Length = 710

 Score =  636 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/653 (41%), Positives = 375/653 (57%), Gaps = 47/653 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+++G GHAGCEAAA +A+ GA T L+T    +IG +SCNP++GG+GKG LVRE+DA
Sbjct: 45  HFDVVIVGAGHAGCEAAAGSARTGARTLLVTTNKHSIGELSCNPSLGGVGKGTLVREVDA 104

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GL G + D AGIQFR+LN  KGPAV GPR Q DR LYR  MQ  +    NL + + +V
Sbjct: 105 LGGLCGIIGDRAGIQFRMLNKSKGPAVHGPRAQIDRSLYRQHMQEALRQYPNLTISEAKV 164

Query: 125 AGFNTE------------------KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            G   +                  K ++  IV  +   I CS V+L TGTFL   IH+G 
Sbjct: 165 HGLQLDWSNRASSHHGNQGEGEKAKAVVRGIVTTNGDSISCSQVILATGTFLSADIHLGL 224

Query: 167 LKIPAGRM-------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-------- 211
               AGRM        D  S+ L  S  +  F  GRLKTGTPAR+   ++          
Sbjct: 225 ESRSAGRMLPLPSINDDPASDGLSQSLARAGFKLGRLKTGTPARIAASSVRLGSPWQIGS 284

Query: 212 ---DKTEKQFADERLIPFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
               + E    D     FSF+ D       RQ+EC  T T   TH I+ +N+  S     
Sbjct: 285 KVDPRLEVIHGDAAPAAFSFLHDAPDIAPARQVECWGTHTTPLTHEIVRQNLDKSIHIKE 344

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG----LNTDVVYPNGISTALPEEIQHQ 321
            +   GPRYCPSIE K++RF E+  H ++LEPEG     +  V+YPNG+S  LP E Q +
Sbjct: 345 TV--RGPRYCPSIESKVIRFKEKQAHPVWLEPEGLPGTNDGSVLYPNGLSCTLPSEQQVE 402

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            +R+IPGLE   +IR GY +EYD+++P+EL  +LETK+I GL+LAGQINGTTGYEEAAAQ
Sbjct: 403 LLRSIPGLECAEMIRAGYGVEYDHVDPRELRHSLETKRIEGLWLAGQINGTTGYEEAAAQ 462

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           G VAG+N+  K N LD +   R+  YIG MIDDL  +GV EPYRMF+SR+EYR++LR DN
Sbjct: 463 GCVAGLNAGLKVNGLDPLSIGRSGGYIGTMIDDLVMQGVEEPYRMFSSRSEYRMTLRADN 522

Query: 442 ADNRLTPIGMKL--GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG 499
           AD RLTP+        +GE+R +RF     + +   +LLK+  ++             D 
Sbjct: 523 ADKRLTPLLRAAYSAAVGEQRWQRFCATQADMDQALALLKANRMSPHGWMKHGFHCSGDS 582

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
             R+  + L  P   I++L  + P      ++V++R++IE+ Y  +  RQ  E +    E
Sbjct: 583 HERSGLDMLKQPRLGIRDLIPVIPALANLGTMVMDRVEIEAKYMPHLERQAQEIEAFNKE 642

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            +   P+ F++ S+P L+++L+EKL +L+P +L     I G TP+    L  Y
Sbjct: 643 TQLRFPEGFNFGSVPGLNSQLREKLELLRPTSLAALKSIPGCTPSNYATLWRY 695


>gi|229020708|ref|ZP_04177435.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1273]
 gi|228740603|gb|EEL90874.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus AH1273]
          Length = 505

 Score =  636 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 223/501 (44%), Positives = 315/501 (62%), Gaps = 7/501 (1%)

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     E  +   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L
Sbjct: 1   MVERLIVEDGVCKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITL 60

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                +  FD  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +
Sbjct: 61  SEHLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWL 120

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T T+ ETHR+I EN+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT
Sbjct: 121 TYTSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNT 180

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
             VY  G+ST+LPE++Q   +RTIPGLE V ++R GYAIEYD I P +L+PTLETKKI  
Sbjct: 181 QEVYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKIKN 240

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A +S     +   R D+YIGV+IDDL +KG  E
Sbjct: 241 LYTAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGRADAYIGVLIDDLVTKGTNE 300

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DNAD RLT +G ++G I E R +RF     +    +  L S++
Sbjct: 301 PYRLLTSRAEYRLLLRHDNADLRLTEVGREIGLIKEDRYERFTNKKLQIEQEKERLGSII 360

Query: 483 LTS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           +       + + S   S  +DG    A + L  P+ + +++  + P     S  + E+++
Sbjct: 361 IKPRPEVQELIRSIGGSELKDGIR--ASDLLRRPEVTYEHIHLLVPSEVALSDEITEQVE 418

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           I++ Y  Y  + + +   +K  E + IP D DY ++ +L++E ++KL  ++P ++ QAS+
Sbjct: 419 IQTKYEGYIEKSLQQVDRMKKMENKKIPVDIDYDAISSLASEARQKLKDVRPLSMGQASR 478

Query: 598 IEGMTPAALNLLLIYIKKNTV 618
           I G+ PA +++LL+YI++  +
Sbjct: 479 ISGVNPADVSILLVYIEQGKI 499


>gi|17534255|ref|NP_496169.1| hypothetical protein F52H3.2 [Caenorhabditis elegans]
 gi|2494737|sp|Q20680|YT32_CAEEL RecName: Full=Uncharacterized protein F52H3.2
 gi|3877390|emb|CAA91322.1| C. elegans protein F52H3.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 638

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 276/615 (44%), Positives = 388/615 (63%), Gaps = 11/615 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCE+AA AA+ G++T L+T   +TIG MSCNP+ GG+GKGHL+RE+DALD
Sbjct: 18  DVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIGKGHLIREVDALD 77

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL  R+ D + I ++ LN  +GPAV G R Q DR+LY+  MQ EI S + L++++GEVA 
Sbjct: 78  GLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKTQMQNEINSTKRLEILEGEVAE 137

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   I  I M + ++IR   VV+TTGTFLR  I+ G    PAGR+G+  S+ L  SF
Sbjct: 138 LLVENGKIVGIRMMNETVIRTKCVVITTGTFLRAQIYQGMKTWPAGRIGEKSSDRLSESF 197

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGIT 243
           +K  F+ GRL+TGTP RL   +I + K E+   D   IPFSF+T  +      Q+   + 
Sbjct: 198 LKHGFELGRLRTGTPPRLMKDSINFSKFERVAPDRTPIPFSFLTKNVWISYEDQLPTYLG 257

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN E  RI  EN+  +  Y    ++  PRYCPS+E K++RF  +  H++FLE EGL++ 
Sbjct: 258 HTNDEVCRIGNENMHEN--YQVASETTSPRYCPSLESKLLRFP-KLHHRLFLEHEGLDSP 314

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YP G+S     E+Q Q +R IPGLE V I +PGY ++YD++NPK+L  TLET+K+ G+
Sbjct: 315 HIYPQGMSLTFKPEVQTQLLRAIPGLENVEIFQPGYGVQYDFVNPKQLKRTLETRKVEGM 374

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQINGTTGYEEAAAQG+VAGIN++ ++     +  SRT+ YIGV+IDDLTS G  EP
Sbjct: 375 FLAGQINGTTGYEEAAAQGVVAGINASARAQNEPGMEVSRTEGYIGVLIDDLTSLGTNEP 434

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSRAE+R+ LRPDNAD RLT +G +   I + R   F +   E N L    + + +
Sbjct: 435 YRMLTSRAEFRLYLRPDNADIRLTELGRRHNAISDNRWAIFTETKGELNNLTQRTEEMKM 494

Query: 484 TSKNLS----STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +           + + + DGK  +A++ +   D    +L  +C   +     ++ERL+IE
Sbjct: 495 SMVKWKRIIPKLAATSRNDGKVLSAFDLIHRYDLDKSDL-ELCLKDKNIGEDILERLKIE 553

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIE 599
             Y     R   + +EI  E    IP + D+S++  +S E  EKL   +P NL  A++I 
Sbjct: 554 GRYQMEHERMKAKKQEIDRESATAIPDNTDFSTMRGMSLECIEKLERARPRNLAAATRIS 613

Query: 600 GMTPAALNLLLIYIK 614
           G+TP A+ +L+ ++K
Sbjct: 614 GITPEAIVVLMRHLK 628


>gi|162606514|ref|XP_001713287.1| glucose inhibited division protein A [Guillardia theta]
 gi|12580753|emb|CAC27071.1| glucose inhibited division protein A [Guillardia theta]
          Length = 649

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/622 (40%), Positives = 367/622 (59%), Gaps = 9/622 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+GGGH+GCEAA  ++K G  T LIT     I    CNP+IGG  K +LV E+D
Sbjct: 30  NSYDVIVVGGGHSGCEAAVASSKSGCKTLLITLNLDKIAWQPCNPSIGGPAKSNLVHEVD 89

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G++G++ D   +  ++LN+ KGPAV   R Q D+  Y   M++ I S+ENL + +G 
Sbjct: 90  AIGGIIGKITDRTYLHKKLLNISKGPAVWALRAQTDKREYSEEMKKFIDSEENLSIQEGM 149

Query: 124 VAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V          I  I        RC +VVLTTGTFL G I +G  K+ AGR G+  S  L
Sbjct: 150 VTQIFLDNNKKIIGIGTHFGGFYRCRSVVLTTGTFLGGTIWVGPKKLSAGRSGEMASIGL 209

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIECG 241
             + +K +   GRLKTGTP R+D +TI + K E Q +D+  + FSF T +  +   + C 
Sbjct: 210 TENLIKSNIKFGRLKTGTPPRIDSRTIDYSKLEIQLSDQNELWFSFDTREWNSRETLPCY 269

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +T+T +ET  II +N+  S  Y G ++S GPRYCPSIEDKIVRF  ++ HQIFLEPEG N
Sbjct: 270 LTKTTIETKNIIKQNLHLSPKYGGFMRSTGPRYCPSIEDKIVRFSNKDEHQIFLEPEGRN 329

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            + +Y  G ST  PE +Q   IRTI GL    I+RP Y+++YD++   +L  TL +  I 
Sbjct: 330 INEIYLQGFSTGFPENLQENLIRTIEGLHSCRILRPAYSVDYDFLPATQLEKTLMS-SIE 388

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+ GTTGYEEA+AQG+V G+N++  + K   +  SR  S+IG MIDDL ++ + 
Sbjct: 389 GLFFAGQVCGTTGYEEASAQGIVTGLNASLYAQKKSLLTISRQGSFIGTMIDDLVTRSLN 448

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+ TSR+EYR+ LR DNAD RL P+G K G + +     F K +++      +L + 
Sbjct: 449 EPYRVLTSRSEYRMLLRGDNADIRLKPLGRKYGLVDDISWINFKKKVRDIKNKSLILNNT 508

Query: 482 VLTSKNLSSTSISFKQD---GKTRTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQ 537
           ++   +  S  I  + +    K  +    +S P+ S  +L +I   +++    L I  L+
Sbjct: 509 IIKINSNISGIIENELNVILKKDLSLASMISRPNVSFDSLINIGIINSKNIEKLRI--LE 566

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
            E  Y  Y  RQ  +   ++      I K+F++  +  +S E +EKLS ++P  L +A+ 
Sbjct: 567 TEIKYQNYITRQNNQILSLERSLDLKIDKNFNFMDVNQISKEGREKLSKIRPKTLREATC 626

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G++ + L++LLI ++K   K
Sbjct: 627 IGGISSSDLHILLIIVEKYKFK 648


>gi|166222942|sp|Q4A909|MNMG_MYCH7 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|144575231|gb|AAZ53380.2| glucose inhibited division protein A [Mycoplasma hyopneumoniae
           7448]
          Length = 619

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 11  EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 71  LGGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 131 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T 
Sbjct: 191 NLKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 251 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF
Sbjct: 311 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 371 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 431 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 490

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 491 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 539

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 540 YIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 599

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 600 DIQMLLFHIK--VLKMQKV 616


>gi|166222943|sp|Q4AAU6|MNMG_MYCHJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|144227418|gb|AAZ44097.2| glucose inhibited division protein A [Mycoplasma hyopneumoniae J]
          Length = 619

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 11  EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 71  LGGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 131 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T 
Sbjct: 191 NLKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKIKKQISCYLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 251 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF
Sbjct: 311 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 371 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 431 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 490

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 491 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 539

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 540 YIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 599

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 600 DIQMLLFHIK--VLKMQKV 616


>gi|119569151|gb|EAW48766.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_g [Homo sapiens]
          Length = 618

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/600 (42%), Positives = 370/600 (61%), Gaps = 23/600 (3%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V            T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +      Q+ C +T TN     I+++N+  ++         GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 298 KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 357

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 358 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 417

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFL 508
             GC+ ++R +R            S+LKS+   S                     A + L
Sbjct: 418 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVL 477

Query: 509 SYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +P
Sbjct: 478 KYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLP 537

Query: 566 KDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           KD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 538 KDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 597


>gi|312600976|gb|ADQ90231.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Mycoplasma hyopneumoniae 168]
          Length = 619

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 11  EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 71  LGGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 131 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + + EK+      I FSF +     +QI C +T 
Sbjct: 191 NLKRLGFELQRLKTGTPPRIFTSSIDFSRVEKEVLPVYNINFSFQSKHKLKKQISCYLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 251 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF
Sbjct: 311 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 371 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 431 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 490

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 491 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 539

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 540 YIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 599

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 600 DIQMLLFHIK--VLKMQKV 616


>gi|72080345|ref|YP_287403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae 7448]
          Length = 610

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 2   EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 62  LGGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 122 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T 
Sbjct: 182 NLKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 242 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF
Sbjct: 302 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 362 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 422 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 481

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 482 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 530

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 531 YIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 590

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 591 DIQMLLFHIK--VLKMQKV 607


>gi|225631114|ref|ZP_03787837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591191|gb|EEH12350.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 567

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 268/564 (47%), Positives = 353/564 (62%), Gaps = 21/564 (3%)

Query: 76  AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--- 132
           A I   +LN  +G AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N   
Sbjct: 1   ASIHSVILNSSRGAAVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNG 60

Query: 133 --IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
              I +++      I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++
Sbjct: 61  ELCIKAVITSSGEHILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYN 120

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETH 250
           F  GRL+TGTP RLD  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH
Sbjct: 121 FKLGRLRTGTPPRLDRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTH 180

Query: 251 RIIMENIKHSAI-YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           +II EN+  SA  Y  DI    PRYCPSIE K+ +F E++ HQIFLEPEGL+ D VYPNG
Sbjct: 181 KIIRENLHRSASSYLDDI--IAPRYCPSIEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNG 238

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
           IS +LP E+Q + I++I GLE   I+RPGYA+EYDYI+P+ELF TLETKK+ GL+ AGQI
Sbjct: 239 ISNSLPIEVQREMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQI 298

Query: 370 NGTTGYEEAAAQGLVAGINSAR-KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           NGTTGYEEAA QG++AGIN+A     K +     RTDSYIGVMIDDL +KGV+EPYR+FT
Sbjct: 299 NGTTGYEEAAGQGIIAGINAALSAFEKKESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFT 358

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           SRAEYR+++R DNAD RLT  G  +  +   R       ++    L   L SL +T + L
Sbjct: 359 SRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQL 418

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS------------LVIERL 536
            S  I    DG  +TA + LSYP+     L  I P+    +              + E +
Sbjct: 419 RSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSITRWDGTAMGSITKNEICEAV 478

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           +IE+ Y  Y  RQ  + K ++ E    IP DF+YS +  LS+E+ EKL  +KP  +  A 
Sbjct: 479 EIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAK 538

Query: 597 KIEGMTPAALNLLLIYIKKNTVKL 620
           +I+G+TPAA+  +L+Y++    K+
Sbjct: 539 QIQGITPAAIVGILVYLRNRKTKV 562


>gi|71893362|ref|YP_278808.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae J]
          Length = 610

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 2   EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ +D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 62  LGGVQGKFSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 122 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T 
Sbjct: 182 NLKRLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKIKKQISCYLTY 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 242 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 301

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETKK+ GLF
Sbjct: 302 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKKVKGLF 361

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 362 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 421

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 422 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 481

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 482 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 530

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP D +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 531 YIQKQNSEAQKMIRLEKLLIPGDLNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 590

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 591 DIQMLLFHIK--VLKMQKV 607


>gi|156840659|ref|XP_001643709.1| hypothetical protein Kpol_507p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114331|gb|EDO15851.1| hypothetical protein Kpol_507p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 664

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/599 (42%), Positives = 380/599 (63%), Gaps = 14/599 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+T   + IG+ SCNP++GG+GKG L+RE+DALDG+  R+ D AGIQF++LN  +G 
Sbjct: 62  KTTLVTPFLNKIGTCSCNPSMGGVGKGILLREVDALDGVAARITDKAGIQFKMLNRSRGA 121

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI--------ISSIVMQD 141
           AV GPR Q DR LY L MQ+E+ +  NL++ + +V     +           I  ++++D
Sbjct: 122 AVWGPRAQLDRSLYLLEMQKELFNYPNLNLKEAKVKDIIIDSRQKGDEKYGSIKGLILED 181

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
            S+++ S VV+TTGTFL G IHIG    PAGR+G+ P+  + ++     F  GRLKTGTP
Sbjct: 182 GSLLKTSKVVITTGTFLGGEIHIGLKSFPAGRIGEEPTFGISSTLNDAGFKLGRLKTGTP 241

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIECGITRTNLETHRIIMENIKHS 260
           ARL+  +I +   EKQ+ DE   P SFM ++++   QI C  TRT  E H  I  N+  +
Sbjct: 242 ARLEKSSIDFTNLEKQYGDEVPHPMSFMNNEVSIKDQILCYGTRTTTELHEYIRTNLHQA 301

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
                 +K  GPRYCPSIE KI+RF ++  H+I+LEPEG+++++VYPNGIS ++PE++Q 
Sbjct: 302 LHIRETVK--GPRYCPSIEAKILRFPDKESHKIWLEPEGIDSNIVYPNGISNSMPEDVQE 359

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
             +R +PGLE V I++P Y +EYDY++P++L  +LETK I GLFLAGQINGTTGYEEA A
Sbjct: 360 TMLRMVPGLENVKILQPAYGVEYDYVDPRQLKSSLETKLIDGLFLAGQINGTTGYEEACA 419

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPD 440
           QG VAGIN+   S     +   R++SYIGV+IDDL +KG+ EPYRMFTSR+E+RI++R D
Sbjct: 420 QGTVAGINAGLSSLGKPPLKLLRSNSYIGVLIDDLITKGIDEPYRMFTSRSEFRITVRAD 479

Query: 441 NADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGK 500
           NAD RLT +G K G I ++R  +F+K    +      LK+   +     S   S      
Sbjct: 480 NADLRLTELGYKSGVISDKRWSQFSKDRDLFEDTIYKLKNYQRSFTKWRSMDPSLPDTPN 539

Query: 501 TRTAYEFLSYPDFSIQNLFS---ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
           + + ++ L Y   +I+ L        +     + V+ +++++  Y  Y  +Q    K  +
Sbjct: 540 SISGWDLLRYQTVTIETLLKNMDAMINMDDIPNHVLLKIEVQGKYEPYMHKQRQYIKAFQ 599

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            +E  L+PK+FDYS +P+LS+E K  L++++P  + QA +I+G+T A+L  L   +++N
Sbjct: 600 ADEDMLLPKNFDYSLVPSLSSESKALLNLIQPETIGQARRIQGITAASLFELYRLVRRN 658


>gi|46111425|ref|XP_382770.1| hypothetical protein FG02594.1 [Gibberella zeae PH-1]
          Length = 668

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/600 (43%), Positives = 369/600 (61%), Gaps = 15/600 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           LIT K   +G+ SCNP+ GG+GKG ++REIDALDGL GR+ D +G+QF +LN +KG AV 
Sbjct: 61  LITPKLDNLGTCSCNPSFGGIGKGTIIREIDALDGLAGRIIDKSGVQFHILNRRKGAAVW 120

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSIVMQDNSM 144
           GPR Q DR+LY+  M+ E+ S  NL ++   V+              N IS + ++   +
Sbjct: 121 GPRAQIDRDLYKKHMKAELTSYPNLSIVLDSVSDIVLTPQDPTDGASNRISGVRLESGQI 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           +  + V++TTGTFL G IHIG    PAGR+G++ +  L  S     F  GRLKTGTP R+
Sbjct: 181 LPTNKVIITTGTFLGGEIHIGLDAYPAGRLGEAATFGLSKSLRDAGFQLGRLKTGTPPRI 240

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKI-TNRQIECGITRTNLETHRIIMENIKHSAIY 263
           DG +I ++  EKQ+ D+   PFS++ D +    Q+ C +T TN  TH ++ + +  +   
Sbjct: 241 DGASINYEVLEKQYGDDPPSPFSYLNDTVAVQEQLTCSVTYTNEMTHDVVRDILDKTIHI 300

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
              +   GPRYCPS+E KI+RF ++  H ++LEPEG ++ V+YPNG+S  +P E Q Q +
Sbjct: 301 RETV--RGPRYCPSLESKIIRFADKTRHIVWLEPEGFDSPVIYPNGLSMTIPAEAQEQVL 358

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
           RTIPGLE   +++PGY +EYDYI+P+ L  TLETK ISGL+LAGQINGTTGYEEAA QG+
Sbjct: 359 RTIPGLENSKMLQPGYGVEYDYIDPRGLKSTLETKAISGLYLAGQINGTTGYEEAAGQGV 418

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AGIN+ R S  L  +  +R+D YIG+M+DDL +KGV EPYRMFTSR+E+R++ R DNAD
Sbjct: 419 LAGINAGRSSQGLPGVSLTRSDGYIGIMVDDLITKGVTEPYRMFTSRSEFRMAARADNAD 478

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLTP G + G I ++R   +    Q+ + L   L+S+ L+           K++   R 
Sbjct: 479 FRLTPKGHEWGVISDKRWSSYRDERQQMDDLTKSLQSVSLSPNQWIEKGFHLKRNSTRRD 538

Query: 504 AYEFLSYPD----FSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
             + L          ++ L S+ P    +S+ V  R+ IE+ YA Y      E K    +
Sbjct: 539 GIDMLRLSSTTTRIELEQLASVMPSIMDYSANVRNRVAIEAFYAPYVKIAETERKRFTND 598

Query: 560 EKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           E+  IP D DY  +P L+   KE L   KP NL QA ++EG+TP+    LL Y+++  V+
Sbjct: 599 ERVRIPIDLDYGEIPGLALSEKEALRAAKPENLAQARRVEGVTPSGSLRLLAYVRRQPVR 658


>gi|4680645|gb|AAD27712.1|AF132937_1 CGI-02 protein [Homo sapiens]
          Length = 618

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/600 (42%), Positives = 371/600 (61%), Gaps = 23/600 (3%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V            T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +      Q+ C +T TN     I+++N++ ++         GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLQLNSHVKETT--RGP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 298 KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 357

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 358 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 417

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFL 508
             GC+ ++R +R            S+LKS+   S                     A + L
Sbjct: 418 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVL 477

Query: 509 SYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +P
Sbjct: 478 KYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLP 537

Query: 566 KDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           KD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 538 KDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 597


>gi|118359868|ref|XP_001013172.1| glucose-inhibited division protein A containing protein
           [Tetrahymena thermophila]
 gi|89294939|gb|EAR92927.1| glucose-inhibited division protein A containing protein
           [Tetrahymena thermophila SB210]
          Length = 671

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/639 (42%), Positives = 391/639 (61%), Gaps = 17/639 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGGHAGCEAA  AA+ GA T L+T K  T+G MSCNP++GG+GKG+L+REI
Sbjct: 31  NNKYDVVVIGGGHAGCEAAYAAARTGAKTLLLTQKKQTVGEMSCNPSMGGIGKGNLIREI 90

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQ 121
           DAL GLMGR+AD +GIQ++VLN  KG AV+GPR Q DR+ Y+  MQ  + +Q  NLDV +
Sbjct: 91  DALGGLMGRMADLSGIQYKVLNSSKGAAVQGPRAQIDRDSYKKNMQNFLFNQVPNLDVAE 150

Query: 122 GEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG---- 175
                   ++  + I  +  Q+N  I   +VV+TTGTFLR   HIG  + PAGR      
Sbjct: 151 ASAEDLLLDEKTHSIKGVKTQNNENIYSKSVVITTGTFLRAYCHIGHKRYPAGRHIRDSD 210

Query: 176 --DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK- 232
             + PS  L  +  ++ F   R  TGTPAR+D  +I ++  E Q +DE + PFSF+ +  
Sbjct: 211 QVEPPSIGLAKTLERYQFHIARYTTGTPARIDRNSINFEGLETQESDEIITPFSFVHEFY 270

Query: 233 ----ITNRQIECGITRTNLETHRIIMENIKHSAIYS-GDIKSYGPRYCPSIEDKIVRFGE 287
                 N  ++C IT+TN +TH II  N +    ++  D K  GPRYCP+IE K++RF +
Sbjct: 271 SPFIPPNPLVKCYITQTNSKTHDIINSNRQFLPKFTFNDGKGLGPRYCPAIEKKVIRFPD 330

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +  HQ++LEPEG N +++YPNG++TA PEEIQ   +R+I GLE   + RPGYA+EYD++N
Sbjct: 331 KKYHQVWLEPEGYNNNIIYPNGLNTAFPEEIQLDLLRSIKGLENCVMTRPGYAVEYDFVN 390

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+EL  +LET+KI GL+LAGQINGTTGYEEAA+QG++AGIN+ ++    + +   R++++
Sbjct: 391 PQELKKSLETRKIKGLYLAGQINGTTGYEEAASQGIIAGINAGQECQGKEPLILDRSEAF 450

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IGV+IDDL S G+ EPYRMFTSR+E+R+SLR +NAD RLTP G+KLG I + +++ F + 
Sbjct: 451 IGVLIDDLISLGISEPYRMFTSRSEFRLSLRAENADFRLTPYGIKLGIINKEQEEVFRQK 510

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR-TAYEFLSYPDFSIQNLFSICPDAR 526
                     L +  + S++     I+         +A + +   D +I  + S   +  
Sbjct: 511 YHMKVKGMHNLMNFKMLSRDWQKKGINIDPQQPGYKSAADIIEKYDKNIDEISSAFNNLF 570

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL-PALSNELKEKLS 585
           +    + + L+ E  Y  Y  +Q  E   ++     +   + D  S+    + E  E LS
Sbjct: 571 EIEPQIKKHLETECKYRTYLDKQTKEILNLQKNLNSIDISEIDLESIKHTATKEEIELLS 630

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
             KP  +  AS+I G+ P  L  +L   KK     + +V
Sbjct: 631 NHKPRTIYAASRIPGIRPTTLVQMLYLAKKGAENESPVV 669


>gi|261417286|ref|YP_003250969.1| glucose inhibited division protein A [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373742|gb|ACX76487.1| glucose inhibited division protein A [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327734|gb|ADL26935.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 633

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/629 (40%), Positives = 359/629 (57%), Gaps = 16/629 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI   +DV+V+GGGHAG EA   A K+G  TA++T   + IG MSCNPA+GG+ KG +VR
Sbjct: 1   MIIAEFDVVVVGGGHAGIEATHAAWKIGVKTAMLTMDLNAIGRMSCNPAVGGVAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           +IDAL GLMG + D AGIQFR+LN+ KGPAV GPR Q D + Y    +  + S   L +I
Sbjct: 61  DIDALGGLMGLLTDKAGIQFRMLNMSKGPAVWGPRAQCDMKYYSEVARETMESLPGLTLI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGE+A F    +    +++ +        +V+T+GTFL   +  G      GR+G+  ++
Sbjct: 121 QGELASFERMNDGRLELILLNGDRYITRAIVVTSGTFLASKMFTGLETSIGGRVGEPSAD 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-----------FM 229
            L     K      RLKTGTP+RLD  +I +++ + Q  DE   P S           F 
Sbjct: 181 KLSECLAKNGIRLRRLKTGTPSRLDPDSIDFNECDVQHGDEHPWPMSDRHFDGATPDKFW 240

Query: 230 TD---KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            D   K       C ITRTN++TH I+    K S ++SG I   GPRYCPSIEDKI RFG
Sbjct: 241 GDQINKFIRNDCVCWITRTNIKTHDILRSGFKDSPMFSGRIHGKGPRYCPSIEDKINRFG 300

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R+GHQ+FLEPE  +   VY NG S++LP +IQ   I TIPGL +  +++ GYA+EYD +
Sbjct: 301 DRDGHQLFLEPEQADIGRVYINGFSSSLPADIQLAAIHTIPGLTRAKVLQIGYAVEYDSV 360

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +  +L+PT E K + GL+ AGQ+ GT+GYEEAA QGL+AGIN+A K    +     R++S
Sbjct: 361 DATQLYPTFECKNVPGLYFAGQVCGTSGYEEAAGQGLMAGINAALKVKGEEPFILGRSES 420

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y+GVM+DDL +  + EPYRMFTSRAEYR+ LR DNA+ RL     K+G I +R  + + +
Sbjct: 421 YLGVMVDDLVNILLDEPYRMFTSRAEYRLFLRSDNAEMRLKEKARKIGMISDRDWEDWTR 480

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQ--DGKTRTAYEFLSYPDFSIQNLFSICPD 524
                  L++       T +  ++   +  Q    +       L  P    +  F +   
Sbjct: 481 RRDLMASLKTQFTETSATPEEANTILEAGGQALASERTRWINVLRRPGIDPETFFKVAAP 540

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
               +      +  E  YA +  RQ  E  + K  EK  +  DFDY S+ A+S E +++L
Sbjct: 541 DANITRRDQWYMYAEELYAGFFDRQEREIDDQKKMEKVKLSPDFDYMSITAISIESRQRL 600

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +  KP  L QAS++ G+ PA + +L  ++
Sbjct: 601 NAHKPLTLGQASRVPGVRPADITVLAHWL 629


>gi|229496352|ref|ZP_04390072.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316930|gb|EEN82843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Porphyromonas endodontalis ATCC 35406]
          Length = 626

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/626 (42%), Positives = 373/626 (59%), Gaps = 11/626 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G+   LIT   + I  +SCNPA+GG+ KG +VR
Sbjct: 1   MNREEYDVIVVGAGHAGCEAAAAAAAMGSRVLLITLDMNKIAQLSCNPAMGGIAKGQIVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G  G ++DA+ IQFR+LN  KGPA+  PR Q DR  +    +  + +  NL + 
Sbjct: 61  EVDALGGWSGWISDASSIQFRMLNRSKGPAMWSPRAQIDRMRFMERWRETLDTIPNLHIW 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  VA    +   +  +           +VVLT GTFL G++H G+  IP GR+ +  S 
Sbjct: 121 QDGVAELLVKNKRVIGVKTLLLKEFYSCSVVLTVGTFLGGMMHFGRTMIPGGRISEPASY 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE-RLIPFSFMTD-KITNRQI 238
            L          T R+KTGTPAR+DG+++ W  T +Q  DE     FS+ T+   T RQ+
Sbjct: 181 GLTEQLRDLGCRTDRMKTGTPARIDGRSVDWSLTTEQKGDEGDFHHFSYCTEGANTLRQL 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C I  T+ E H I+  ++  S +Y+G I+S GPRYCPSIE KIV F ++  HQ+FLEPE
Sbjct: 241 SCHILYTSPECHEILRASLADSPLYNGQIQSIGPRYCPSIETKIVTFADKEQHQLFLEPE 300

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G NT+  Y NG S++LP E+Q + +RT+P L  V I RPGYAIEYD+ +P +L+PTL  K
Sbjct: 301 GENTNEYYINGFSSSLPLEVQLEALRTLPALRNVRIYRPGYAIEYDFFDPTQLYPTLAHK 360

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            + GL++AGQINGTTGYEEAA QG++AGIN+  +++ L      R+++YIGV++DDL +K
Sbjct: 361 LLGGLYMAGQINGTTGYEEAAGQGILAGINAHNEAHGLGDFVLQRSEAYIGVLVDDLVTK 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE+R  LR DNAD+RLTP  MKLG   E R+ RF    Q    +++ +
Sbjct: 421 GVDEPYRMFTSRAEFRTLLRQDNADDRLTPYAMKLGLASELRRNRFTYKEQMIEEVKAFM 480

Query: 479 KSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-------S 529
               +    ++S       +         E L  P  ++ +L  + P    F        
Sbjct: 481 AQYSVRPDRVNSLLEQQGEQPLKHAIRLRELLLRPRLTLDHLLDVLPPFHTFVEKIASQR 540

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             ++ER++I+  YA Y  R+  +A      E   +   FDY SL  LS E ++KL  ++P
Sbjct: 541 EEILERVEIDIKYAGYIEREKQQADRAMRLESITLGNRFDYLSLEQLSTEARQKLDRIRP 600

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + QA++I G++P  +++LL+   +
Sbjct: 601 ETIGQAARIPGVSPHDISVLLVLCGR 626


>gi|241949319|ref|XP_002417382.1| mitochondrial tRNA modification protein, putative [Candida
           dubliniensis CD36]
 gi|223640720|emb|CAX45033.1| mitochondrial tRNA modification protein, putative [Candida
           dubliniensis CD36]
          Length = 694

 Score =  631 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 267/629 (42%), Positives = 385/629 (61%), Gaps = 29/629 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 40  VIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDALDG 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V   
Sbjct: 100 VSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVEDI 159

Query: 128 NTEKN------------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             E               +  +++ D  +++   VV+TTGTFL G IHIG    P+GRMG
Sbjct: 160 IIEPVLNGEDFSGRAFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSGRMG 219

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK+  
Sbjct: 220 EDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTIDFKGLIEQPSDFPPQPMSYMNDKVDL 279

Query: 236 RQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ H +
Sbjct: 280 EDQLMKCYQTKTNPEFHKIIADNLDKSIHIRESVK--GPRYCPSIESKVIKFPNKDYHYV 337

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           +LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+EL  
Sbjct: 338 WLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRELKS 397

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK ++GL+LAGQINGTTGYEEAAAQG VAGIN+     +   +   R D  + ++ID
Sbjct: 398 TLETKLVNGLYLAGQINGTTGYEEAAAQGCVAGINAGLSYLQKPLLELKRPDGLVAILID 457

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           DL +KGV EPYRMFTSR+E+R S+R DNADNRLT  G  LG + ERR + F K   ++  
Sbjct: 458 DLITKGVEEPYRMFTSRSEFRFSIRSDNADNRLTQKGYDLGVVSERRYQFFKKESDQFWE 517

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFS--------IC 522
           ++++L  L L+ K  +      K D +     + ++ LSYP  SI NL          + 
Sbjct: 518 IKNVLSELKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINNLLPHMSDFMGQVP 577

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNEL 580
           P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S+E+
Sbjct: 578 PCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKISHEV 637

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLL 609
              L+I++P  + QA  ++G+TP A+N L
Sbjct: 638 CTILNIVQPTTIGQAQSLQGITPTAINEL 666


>gi|54019972|ref|YP_115518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyopneumoniae 232]
 gi|81170558|sp|Q602E7|MNMG_MYCH2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|53987145|gb|AAV27346.1| glucose inhibited division protein A [Mycoplasma hyopneumoniae 232]
          Length = 619

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/619 (40%), Positives = 363/619 (58%), Gaps = 13/619 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IV+GGGHAG EA     K      LIT     + SM CNPAIGG  KG + REIDA
Sbjct: 11  EFDAIVVGGGHAGIEAVYALLKKKLKVVLITLDKKKLASMPCNPAIGGPAKGIITREIDA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+++D A IQ + LN  KGPAV   R Q D+E Y   + +++  QENL +I+  V
Sbjct: 71  LGGVQGKLSDLAMIQIKYLNESKGPAVLAIRAQIDKEKYSKLILKDLKKQENLLIIEDLV 130

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +    EKN +  +      +    TV++TTGT++   +  G L IP+G  G   SN L N
Sbjct: 131 SELLVEKNRVFGLKTAKKQVFFSKTVIITTGTYMDSKVLRGSLAIPSGPDGQQTSNLLSN 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +     F+  RLKTGTP R+   +I + K EK+      I FSF +     +QI C +T 
Sbjct: 191 NLKTLGFELQRLKTGTPPRIFTSSIDFSKVEKEVLPVYNINFSFQSKHKLKKQISCYLTY 250

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +TH II +N+  S++YSG I   GPRYCPSIEDKIVRF E+  HQIF EPE    D+
Sbjct: 251 TTAKTHDIINKNLGKSSMYSGLISGVGPRYCPSIEDKIVRFSEKPRHQIFFEPETKKQDI 310

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           +Y NG+ST++PE++Q + ++TIPGLE   I + GYAIEYD +NP EL  +LETK++ GLF
Sbjct: 311 MYINGLSTSMPEDVQLEMVKTIPGLENAKIAKFGYAIEYDALNPLELKKSLETKRVKGLF 370

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQINGT+GYEEAAAQGLVAGIN+ +       +   R D YIGV+IDDL +KG  EPY
Sbjct: 371 MAGQINGTSGYEEAAAQGLVAGINAGQFVLGKKPVEILRNDGYIGVLIDDLVTKGTKEPY 430

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSRAEYR+ LR DNAD R+    +K G I ++   +      + +     L    ++
Sbjct: 431 RMLTSRAEYRLILRNDNADIRMAKYALKSGLISKKEYLKIKAKYAKIDRKILELSKEFVS 490

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            K+  +   + +   K  +  + +S+P+ + +++        + +        + +    
Sbjct: 491 PKDELAKKYNLE---KRISKLKLISWPNVNFKDILPDFEFGYELT--------VMARLKG 539

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  +Q  EA+++   EK LIP + +Y  +  LS+E  +K   ++P  + +AS+I G+ PA
Sbjct: 540 YIQKQNSEAQKMIRLEKLLIPGELNYEKVANLSSEALDKFQKVRPKTIGEASRISGVNPA 599

Query: 605 ALNLLLIYIKKNTVKLNEI 623
            + +LL +IK   +K+ ++
Sbjct: 600 DIQMLLFHIK--VLKMQKV 616


>gi|330723615|gb|AEC45985.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis MCLD]
          Length = 619

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/622 (39%), Positives = 360/622 (57%), Gaps = 15/622 (2%)

Query: 2   INRS---YDVIVIGGGHAGCEAAAVAAKL-GASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +N+    ++ IV+GGGHAG EA    +K      AL+T     + SM CNP+IGG  KG 
Sbjct: 1   MNKKQLFFNAIVVGGGHAGIEAIYALSKAENLKVALVTLNKHKLASMPCNPSIGGPAKGI 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           + REIDAL G+ G  +D A IQ + LN  KGPAV+  R Q D+E Y   + ++I  ++N+
Sbjct: 61  ITREIDALGGVQGYFSDLAMIQVKYLNESKGPAVKAIRAQIDKEKYSKLILKDIKQRKNI 120

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +I+  V     +   IS I ++   +I+  ++++TTGT+L   I  G+ +  +G   + 
Sbjct: 121 TLIEDLVTKLEVKNKAISGIYLEKLGLIKTKSLIITTGTYLDSKILRGEEQYKSGPDNER 180

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            SN L ++  +  F+  RLKTGTP R+   +I + + E++      I FS  T +   +Q
Sbjct: 181 TSNLLSDNLKELGFELQRLKTGTPPRIYSDSIDFSQVEREVLPLVNISFSSKTKQNIKKQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T TN ETH+II EN+  S++YSG I   GPRYCPSIEDKIVRF  +  HQIF EP
Sbjct: 241 ISCFLTYTNEETHKIINENLNRSSMYSGAINGVGPRYCPSIEDKIVRFSTKERHQIFFEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           E    D++Y NG+ST++P ++Q + IRTIPGL+   + + GYAIEYD +NP EL  +LE+
Sbjct: 301 ETKRQDIMYINGMSTSMPVDVQDKLIRTIPGLKNARVAKWGYAIEYDALNPLELKRSLES 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+  LF AGQ+NGT+GYEEAAAQGLVAGIN+  K  K   I   R D YIGV+IDDL +
Sbjct: 361 KKVKNLFFAGQMNGTSGYEEAAAQGLVAGINAKEKLLKKRPIEILRNDGYIGVLIDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRM TSRAEYR+ LR DNAD R+     K G I  +  ++  +  ++ + +   
Sbjct: 421 KGTKEPYRMLTSRAEYRLILRNDNADIRMAKYAKKTGMISLKEYEKIIEKYRKIDKMIDK 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L    ++ K+       ++    T    + +S P    +++                 L 
Sbjct: 481 LSKEFVSPKD--KLGKKYEVSDGTSKL-KLISRPTVDYKDVLP--------DFEYAYELM 529

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           + +    Y  +Q  +A+++   EK  IP + DY  +  LS+E  +KL  ++P  + QAS+
Sbjct: 530 VIARLEGYIRKQNNDAQKMIRLEKLKIPANIDYKKVNNLSSESVDKLMKIRPNTIGQASR 589

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+ PA + +LL Y+K    K
Sbjct: 590 ISGVNPADIQMLLFYLKVEKEK 611


>gi|304372809|ref|YP_003856018.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis HUB-1]
 gi|304309000|gb|ADM21480.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma hyorhinis HUB-1]
          Length = 619

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/622 (39%), Positives = 360/622 (57%), Gaps = 15/622 (2%)

Query: 2   INRS---YDVIVIGGGHAGCEAAAVAAKL-GASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +N+    ++ IV+GGGHAG EA    +K      AL+T     + SM CNP+IGG  KG 
Sbjct: 1   MNKKQLFFNAIVVGGGHAGIEAIYALSKAENLKVALVTLNKHKLASMPCNPSIGGPAKGI 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           + REIDAL G+ G  +D A IQ + LN  KGPAV+  R Q D+E Y   + ++I  ++N+
Sbjct: 61  ITREIDALGGVQGYFSDLAMIQVKYLNESKGPAVKAIRAQIDKEKYSKLILKDIKQRKNI 120

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +I+  V     +   IS I ++   +I+  ++++TTGT+L   I  G+ +  +G   + 
Sbjct: 121 TLIEDLVTKLEVKNKAISGIYLEKLGLIKTKSLIITTGTYLDSKILRGEEQYKSGPDNER 180

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            SN L ++  +  F+  RLKTGTP R+   +I + + E++      I FS  T +   +Q
Sbjct: 181 TSNLLSDNLKELGFELQRLKTGTPPRIYSDSIDFSQVEREVLPLVNISFSSKTKQNIKKQ 240

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           I C +T TN ETH+II EN+  S++YSG I   GPRYCPSIEDKIVRF  +  HQIF EP
Sbjct: 241 ISCFLTYTNEETHKIINENLNRSSMYSGAINGVGPRYCPSIEDKIVRFSTKERHQIFFEP 300

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           E    D++Y NG+ST++P ++Q + IRTIPGL+   + + GYAIEYD +NP EL  +LE+
Sbjct: 301 ETKRQDIMYINGMSTSMPVDVQDKLIRTIPGLKNARVAKWGYAIEYDALNPLELKRSLES 360

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+  LF AGQ+NGT+GYEEAAAQGLVAGIN+  K  K   I   R D YIGV+IDDL +
Sbjct: 361 KKVKNLFFAGQMNGTSGYEEAAAQGLVAGINAKEKLLKRRPIEILRNDGYIGVLIDDLVT 420

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYRM TSRAEYR+ LR DNAD R+     K G I  +  ++  +  ++ + +   
Sbjct: 421 KGTKEPYRMLTSRAEYRLILRNDNADIRMAKYAKKTGMISLKEYEKIIEKYRKIDKMIDK 480

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           L    ++ K+       ++    T    + +S P    +++                 L 
Sbjct: 481 LSKEFVSPKD--KLGKKYEVSDGTSKL-KLISRPTVDYKDVLP--------DFEYAYELM 529

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           + +    Y  +Q  +A+++   EK  IP + DY  +  LS+E  +KL  ++P  + QAS+
Sbjct: 530 VIARLEGYIRKQNNDAQKMIRLEKLKIPANIDYKKVNNLSSESVDKLMKIRPNTIGQASR 589

Query: 598 IEGMTPAALNLLLIYIKKNTVK 619
           I G+ PA + +LL Y+K    K
Sbjct: 590 ISGVNPADIQMLLFYLKVEKEK 611


>gi|124516565|gb|EAY58073.1| Glucose-inhibited division protein A [Leptospirillum rubarum]
          Length = 605

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/617 (41%), Positives = 368/617 (59%), Gaps = 20/617 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV++IGGGH+G EAAA ++++G  T L+T     IG MSCNP++GG+GKGH+V EI+
Sbjct: 2   KIWDVVIIGGGHSGIEAAAASSRMGLETLLVTLHLDLIGQMSCNPSVGGIGKGHIVSEIE 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M ++ADA+G+QF++LN +KG AV+  R Q DR  YR   +  +    NL   QGE
Sbjct: 62  AMGGAMSKLADASGLQFKMLNTRKGYAVQALRVQCDRYRYRQQARFFLEKYPNLFFRQGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G+    ++++S+++ D + I   + VLTTGTFL G +H+G+  +  GR G+  ++ L 
Sbjct: 122 VVGWRLRGSLVTSVLLHDETEIFARSFVLTTGTFLSGKLHVGERLVEGGRGGEKNASHLS 181

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQI 238
           +          GRLKTGTP R+ GKTI + + + Q  D   + FS   D         Q 
Sbjct: 182 SRLQGDLGLSVGRLKTGTPPRISGKTIDFSRMDIQPGDNPPVFFSHHPDNGRLFFDGPQY 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +T  II EN+  S +YSG IK  GPRYCPSIEDKIV+F ER  H +F+EPE
Sbjct: 242 PCYLTSTNNQTADIIRENLSRSPLYSGKIKGIGPRYCPSIEDKIVKFPERESHHVFIEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G + D  YPNGIST+LP ++Q + + +IPGLE   I RPGYA+EYD++ P +L  +L+  
Sbjct: 302 GADVDEFYPNGISTSLPVDVQERIVHSIPGLENAQITRPGYAVEYDFVFPDQLDLSLKVS 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  +FLAGQINGTTGYEEAA QGLVAGIN+   +         RT SYIGVMIDDL S+
Sbjct: 362 HLENVFLAGQINGTTGYEEAAGQGLVAGINAGLLAKGNAPWIPDRTFSYIGVMIDDLVSQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE R+ +R  NAD+R+TP+G  LG + + + + F K  + ++ L+ +L
Sbjct: 422 GVDEPYRMFTSRAENRLFIRHHNADDRMTPLGKSLGVVPDSQWRIFEKKRESFSQLKKIL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++     KN   T          +       +PD SI  +++  P   +         + 
Sbjct: 482 QTHRAEGKNFLQTL--------KQPEVHLDDFPDPSISGIYATWPRFWQIGF------ES 527

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E  Y  Y      + +++K EE   IP+ F  S  P +S E+  +L    P    +A  I
Sbjct: 528 EIKYEGYIRISEKKTQDLK-EEDYPIPEGFWNSPPPGISREIFTRLVKASPRTFREAMHI 586

Query: 599 EGMTPAALNLLLIYIKK 615
            GMTP AL  L   +++
Sbjct: 587 RGMTPGALESLRTKLRQ 603


>gi|115375135|ref|ZP_01462403.1| glucose-inhibited division protein A subfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|115367881|gb|EAU66848.1| glucose-inhibited division protein A subfamily [Stigmatella
           aurantiaca DW4/3-1]
          Length = 621

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/627 (40%), Positives = 366/627 (58%), Gaps = 30/627 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA   ++LG ST  +T K      MSCNPA+GG  KGHLVRE
Sbjct: 15  MKHRYDVIVVGLGHAGCEAALACSRLGLSTLGLTLKRDRAAVMSCNPAVGGTAKGHLVRE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR AD +G  F+ LN  KGPAV+  R   DR+ Y   +Q  + SQ +L V +
Sbjct: 75  LDALGGEMGRAADLSGTHFKTLNASKGPAVQATRILCDRDAYARTVQAALFSQPHLTVHE 134

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   ++ +V+ D S ++   V+LTTGTFL+ ++H+G+ K   GR+GD  +  
Sbjct: 135 AEVSSLAVEDGHVAGVVLGDGSQVQARAVLLTTGTFLQALMHVGEKKEVGGRLGDEAARG 194

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--------I 233
           L  S     F  GR KTGTPARL   +I WD  E Q  D    PFS+ T +         
Sbjct: 195 LSLSLRSLGFTLGRFKTGTPARLRRDSIDWDAVEPQPTDAPPRPFSWRTRQDIASGVPFP 254

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               + CGIT T   THR++ +N+  S ++ GDI   GPRYCPS+EDK+VRF  R  HQ+
Sbjct: 255 LQPSVTCGITFTTEATHRLLRDNLHRSPLFQGDIVGRGPRYCPSLEDKVVRFAARERHQV 314

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG ++ +VYP G+ST++P ++Q  F+R+IPGL +V ++R GYA+EYDY  P +L  
Sbjct: 315 FLEPEGPDSPLVYPAGLSTSMPADVQLDFLRSIPGLAQVEVVRFGYAVEYDYAPPTQLSS 374

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK + GLF AGQ+NGT+GYEEAA QGL AG+N+A +      +   R +++  V++D
Sbjct: 375 TLETKAVRGLFFAGQLNGTSGYEEAAFQGLYAGLNAALQVKGEPPLLLGREEAHGAVLVD 434

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           +L +KGV EP+RMFTSR+E+R+ LR  NA+ RL   G ++G +     +R    +     
Sbjct: 435 ELVTKGVDEPFRMFTSRSEHRLKLREGNAEARLARHGHRVGLLPREALERVEARVHAVQR 494

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + LK   L ++                     L  P+ +  +L +   +  +    V 
Sbjct: 495 EVARLKRSGLGAR---------------------LKRPEVTYASLAAEAREWPEVPPEVA 533

Query: 534 ERLQIESSYAAYT-GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           E +++E  Y  Y    +   A+E    +  +IP  F ++ +  LS+E  EKLS  +P  +
Sbjct: 534 EEVEVEVKYEGYIAQAERAAAREADAWDGWVIPAGFRFAEVRGLSSEAVEKLSAHRPGTV 593

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVK 619
            Q  +I G+TPAAL+L+L+ +K+   +
Sbjct: 594 GQVRRIPGLTPAALSLVLVALKRERAR 620


>gi|310825572|ref|YP_003957930.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmg
           [Stigmatella aurantiaca DW4/3-1]
 gi|309398644|gb|ADO76103.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Stigmatella aurantiaca DW4/3-1]
          Length = 607

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/627 (40%), Positives = 366/627 (58%), Gaps = 30/627 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G GHAGCEAA   ++LG ST  +T K      MSCNPA+GG  KGHLVRE
Sbjct: 1   MKHRYDVIVVGLGHAGCEAALACSRLGLSTLGLTLKRDRAAVMSCNPAVGGTAKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MGR AD +G  F+ LN  KGPAV+  R   DR+ Y   +Q  + SQ +L V +
Sbjct: 61  LDALGGEMGRAADLSGTHFKTLNASKGPAVQATRILCDRDAYARTVQAALFSQPHLTVHE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV+    E   ++ +V+ D S ++   V+LTTGTFL+ ++H+G+ K   GR+GD  +  
Sbjct: 121 AEVSSLAVEDGHVAGVVLGDGSQVQARAVLLTTGTFLQALMHVGEKKEVGGRLGDEAARG 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK--------I 233
           L  S     F  GR KTGTPARL   +I WD  E Q  D    PFS+ T +         
Sbjct: 181 LSLSLRSLGFTLGRFKTGTPARLRRDSIDWDAVEPQPTDAPPRPFSWRTRQDIASGVPFP 240

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               + CGIT T   THR++ +N+  S ++ GDI   GPRYCPS+EDK+VRF  R  HQ+
Sbjct: 241 LQPSVTCGITFTTEATHRLLRDNLHRSPLFQGDIVGRGPRYCPSLEDKVVRFAARERHQV 300

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
           FLEPEG ++ +VYP G+ST++P ++Q  F+R+IPGL +V ++R GYA+EYDY  P +L  
Sbjct: 301 FLEPEGPDSPLVYPAGLSTSMPADVQLDFLRSIPGLAQVEVVRFGYAVEYDYAPPTQLSS 360

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLETK + GLF AGQ+NGT+GYEEAA QGL AG+N+A +      +   R +++  V++D
Sbjct: 361 TLETKAVRGLFFAGQLNGTSGYEEAAFQGLYAGLNAALQVKGEPPLLLGREEAHGAVLVD 420

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           +L +KGV EP+RMFTSR+E+R+ LR  NA+ RL   G ++G +     +R    +     
Sbjct: 421 ELVTKGVDEPFRMFTSRSEHRLKLREGNAEARLARHGHRVGLLPREALERVEARVHAVQR 480

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
             + LK   L ++                     L  P+ +  +L +   +  +    V 
Sbjct: 481 EVARLKRSGLGAR---------------------LKRPEVTYASLAAEAREWPEVPPEVA 519

Query: 534 ERLQIESSYAAYT-GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           E +++E  Y  Y    +   A+E    +  +IP  F ++ +  LS+E  EKLS  +P  +
Sbjct: 520 EEVEVEVKYEGYIAQAERAAAREADAWDGWVIPAGFRFAEVRGLSSEAVEKLSAHRPGTV 579

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVK 619
            Q  +I G+TPAAL+L+L+ +K+   +
Sbjct: 580 GQVRRIPGLTPAALSLVLVALKRERAR 606


>gi|238878791|gb|EEQ42429.1| hypothetical protein CAWG_00640 [Candida albicans WO-1]
          Length = 695

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/630 (41%), Positives = 384/630 (60%), Gaps = 30/630 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 40  VIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDALDG 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V   
Sbjct: 100 VSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVEDI 159

Query: 128 NT-------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                          E   +  +++ D  +++   VV+TTGTFL G IHIG    P+GRM
Sbjct: 160 IIKPVLSNREDFSGREFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK+ 
Sbjct: 220 GEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTINFKGLIEQPSDFPPQPMSYMNDKVY 279

Query: 235 NRQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ H 
Sbjct: 280 LEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDYHY 337

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+EL 
Sbjct: 338 VWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRELK 397

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK ++GL+LAGQINGTTGYEEAAAQG +AGIN+     +   +   R D  + ++I
Sbjct: 398 STLETKLVNGLYLAGQINGTTGYEEAAAQGCIAGINAGLSYLQKPLLELKRPDGLVAILI 457

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R S+R DNAD+RLT  G +LG + E R + F K   ++ 
Sbjct: 458 DDLITKGVEEPYRMFTSRSEFRFSIRSDNADDRLTQKGYELGVVSEERYQFFKKEADQFK 517

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFS--------I 521
            +++ L  L L+ K  +      K D +     + ++ LSYP  SI ++          +
Sbjct: 518 DIKNALSELKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINDILPHMSHFMTQV 577

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNE 579
            P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S+E
Sbjct: 578 PPCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKISHE 637

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           +   L+I++P  + QA  ++G+TP A+N L
Sbjct: 638 VCTILNIVQPTTIGQAQSLQGITPTAINEL 667


>gi|302308765|ref|NP_985802.2| AFR255Wp [Ashbya gossypii ATCC 10895]
 gi|299790784|gb|AAS53626.2| AFR255Wp [Ashbya gossypii ATCC 10895]
          Length = 695

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/628 (41%), Positives = 386/628 (61%), Gaps = 16/628 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGGHAGCEA++ AA+ G    L+T     IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 67  VVVIGGGHAGCEASSAAARAGGKATLVTPSLDKIGTCSCNPSMGGIGKGTLLREVDALDG 126

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L  RV D AG+QF+VLN  +G AV GPR Q DR++Y   MQR + +   L +++G V   
Sbjct: 127 LAPRVTDLAGLQFKVLNRSRGAAVWGPRAQIDRKIYMREMQRVMTNYPGLTLLEGSVDDL 186

Query: 128 NTEKNII--------SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
             E+  +          +++QD  ++R S VVLTTGTFL   IHIG    PAGR+G++P+
Sbjct: 187 VVEEKEVAGTIRRSIRGVILQDQRLLRASRVVLTTGTFLGAEIHIGLQSFPAGRLGEAPT 246

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             +  +    DF  GRLKTGTPARLD  +I +    ++F DE   P S++ +K+   + E
Sbjct: 247 YGISKTMRGLDFMMGRLKTGTPARLDKNSIDYTGMTREFGDEPPHPMSYLNNKVAAERQE 306

Query: 240 -CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C  T T  E H  ++ N+  S      +K  GPRYCPS+E K++RF  ++ H+I+LEPE
Sbjct: 307 VCFGTHTTKELHAYVVSNLHQSIHIKETVK--GPRYCPSLEAKVLRFPHKDSHRIWLEPE 364

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G +++V+YPNGIS ++PE++QH+ ++ IPGL  V ++ P Y +EYDYI+P+EL  TLETK
Sbjct: 365 GWDSEVIYPNGISNSMPEDVQHRMLQMIPGLANVKMLYPAYGVEYDYIDPRELKQTLETK 424

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           ++ GL+LAGQINGTTGYEEA AQG+VAG N+   S     +   R D+Y+GV+IDDL +K
Sbjct: 425 RVDGLYLAGQINGTTGYEEACAQGIVAGANAGLASVGKSPLIIGRPDAYVGVLIDDLITK 484

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFT+R+E+R+++R DNAD RLT +G + G +G+ R K F ++   YN +   L
Sbjct: 485 GVEEPYRMFTTRSEFRLTVRADNADMRLTDLGHRAGVVGDERWKTFTEHRALYNDIHEKL 544

Query: 479 KSLVLTSKNLSST-SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR----KFSSLVI 533
                ++       +   +   K  +A+E   Y + ++  L +  PD           V+
Sbjct: 545 NHYTCSNTQWHKLCNEVVRSPQKGVSAWEMYKYSNINLALLAASVPDLNIDIGSVPVHVM 604

Query: 534 ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLL 593
            +L  E  YA Y  +Q  +    + +E   +P + DYS++  ++ E +  L+ ++P  L 
Sbjct: 605 HKLDAEGRYAPYLKKQRQQVHAYQADENIRLPDNIDYSTVQGINTEGQLLLNRVRPQTLG 664

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLN 621
           QA +I+G+TP A+  L     K   + +
Sbjct: 665 QARRIQGITPVAMFELYKLAAKRAPRAD 692


>gi|85375438|ref|YP_459500.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Erythrobacter litoralis HTCC2594]
 gi|122543371|sp|Q2N6I8|MNMG_ERYLH RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|84788521|gb|ABC64703.1| glucose inhibited division protein A [Erythrobacter litoralis
           HTCC2594]
          Length = 621

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/615 (45%), Positives = 393/615 (63%), Gaps = 2/615 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D++V+GGGHAG EAA  AA++G  TAL++   + IG+MSCNPAIGGLGKGHLVRE+D
Sbjct: 6   HDFDILVVGGGHAGVEAACAAARMGVRTALVSFDPARIGAMSCNPAIGGLGKGHLVREVD 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A DG++ R ADAA I +R+LN  KG AV GPR QADR+L+  A+Q  + +QENL V+ GE
Sbjct: 66  AFDGVIARAADAAAIHYRMLNRSKGSAVWGPRVQADRKLFHAAVQAIVATQENLTVVPGE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E   ++ I + D + +    V+L TGTFL G ++ G+  +  GR+G+  ++ L 
Sbjct: 126 VAALRFEGARVTGIELADGTALSGQAVILCTGTFLGGKLYRGEEIMVGGRIGEDSASRLA 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                 +    RLKTGTP RLDG+TI W   E+Q +D      S +T   +N +I CGIT
Sbjct: 186 EQMYGLELPMARLKTGTPPRLDGRTIDWAALEEQPSDGEDWTLSALTPARSNPEIFCGIT 245

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RTN   H II  N+  S ++SG I + GPRYCPSIEDKI RFG+R+GHQ+FLEPEGL+T 
Sbjct: 246 RTNARAHDIIRANLNRSPLFSGAIDAQGPRYCPSIEDKIHRFGDRDGHQVFLEPEGLDTH 305

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           +VYPNGIST+LP ++Q   +R + GL  V ++ PGYA+EYD+I P+ L   L  K + GL
Sbjct: 306 LVYPNGISTSLPVDVQLGMLRAMDGLFHVELVEPGYAVEYDHIEPRALTSGLRLKDVEGL 365

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQINGTTGYEEAAAQGL+AG+N+A      +     R  SY+ VM+DDLT  GV EP
Sbjct: 366 YCAGQINGTTGYEEAAAQGLIAGLNAACVVLDREAPALDRATSYMAVMVDDLTLHGVSEP 425

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM T+RAEYR+ LR +NA  RLTP+ ++LGC+G  R + FA+  ++   L + L S   
Sbjct: 426 YRMLTARAEYRLRLRANNATARLTPLAIELGCVGGERAEWFARREEKRARLDAALDS-QA 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           ++K +    +  K D       E+L +P     +L  + P+     + +   L  +++YA
Sbjct: 485 SAKQMQDLGLPVKSDSGKMALREWLRFPTIDFPDLAPLVPEV-DTGTELAAELAEDAAYA 543

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +E+K  E   +  DF ++ +P LS+E+ E+L+  +P  L  A ++ G+TP
Sbjct: 544 PYLARQDAELRELKANEAITLAADFPFAEVPGLSSEMVERLTAARPETLAAAGRVPGVTP 603

Query: 604 AALNLLLIYIKKNTV 618
           AAL  +L++ +K   
Sbjct: 604 AALAAVLVHTRKRGR 618


>gi|294010015|ref|YP_003543475.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Sphingobium japonicum UT26S]
 gi|292673345|dbj|BAI94863.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Sphingobium japonicum UT26S]
          Length = 616

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/617 (47%), Positives = 402/617 (65%), Gaps = 1/617 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SYDVIV+GGGHAGCEAA  AA+ GA+  L+T + +T+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MRTSYDVIVVGGGHAGCEAAGAAARKGAAVTLLTFERATVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGL+ R ADAA I +R+LN  KG AV+GPR QADR+ YR  + R + +Q  L++++
Sbjct: 61  VDALDGLIARAADAAAIHYRMLNSSKGAAVQGPRVQADRKRYRAEIHRLLDAQSGLEIVE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE  G    +  ++ + + D   +   +VVL TGTFL G +  G+  +  GR+ +  + +
Sbjct: 121 GEAVGLLLAEGAVAGLSLADGRRLHAPSVVLATGTFLGGKLFRGEETLTGGRISERAATA 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D   GRLKTGTP R+DG+TI W   E Q +D      S ++      Q+ C 
Sbjct: 181 LGVQLRALDLPMGRLKTGTPPRIDGRTIDWAALEAQPSDAEGWTMSALSPGRPLPQLSCA 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  TH II E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTNDRTHAIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVIRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
             +VYPNGIST+LP ++Q   +R++ GLEK +I  PGYA+EYD+I+P+ L  TLE + I 
Sbjct: 301 DHLVYPNGISTSLPADVQLAMVRSMAGLEKADIRVPGYAVEYDHIDPRALDATLEVQAIP 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGL+AGIN+A ++     +   R  SYIGVMIDDL  +GV 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLLAGINAAARARGEGPLILDRASSYIGVMIDDLVLQGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR+ LR DNA  RL  IG + G +GE R   +A+   E   +   L S 
Sbjct: 421 EPYRMLTARAEYRLRLRADNAGTRLAEIGFEHGVLGEERAAYYARRHDERAAVEEEL-SR 479

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             ++  ++ +    +QDG  R+ +E+  +P+     L  + P   + S  + E L  ++ 
Sbjct: 480 TFSATEMARSGAPVRQDGARRSLFEWARFPEVGRSLLCELAPTLSRISHDLREELLEDAH 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E  E++  E+ +IP  FD++++  LS E+ E+L++ +P  L  A +I G+
Sbjct: 540 YAPYLERQEAEIAEMRRNERVVIPAGFDFAAIGGLSTEMVERLTLARPDTLAAAGRIRGI 599

Query: 602 TPAALNLLLIYIKKNTV 618
           TPAAL  LL++I++   
Sbjct: 600 TPAALAALLVHIRRRAA 616


>gi|68476591|ref|XP_717588.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|68476740|ref|XP_717515.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46439229|gb|EAK98549.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
 gi|46439305|gb|EAK98624.1| potential mitochondrial tRNA modification protein [Candida albicans
           SC5314]
          Length = 695

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/630 (41%), Positives = 384/630 (60%), Gaps = 30/630 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGGHAGCEAA  +A+    T LIT   + IG+ SCNP++GG+GKG L+RE+DALDG
Sbjct: 40  VIVIGGGHAGCEAATGSARSQTPTTLITPYINKIGTASCNPSMGGVGKGTLLREVDALDG 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +  R+ D AGI FR+LN  +G AV GPR Q DR++Y   MQ+EIL+  NL V++ +V   
Sbjct: 100 VSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKEILNYPNLKVLEAQVEDI 159

Query: 128 NT-------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                          E   +  +++ D  +++   VV+TTGTFL G IHIG    P+GRM
Sbjct: 160 IIKPVLSNGEDFSGREFGEVKGVILSDGRVLKSEKVVVTTGTFLGGEIHIGLKCFPSGRM 219

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
           G+  +  L  +  +  F  GRLKTGTP RL  +TI +    +Q +D    P S+M DK+ 
Sbjct: 220 GEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTINFKGLIEQPSDFPPQPMSYMNDKVY 279

Query: 235 NRQ--IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                ++C  T+TN E H+II +N+  S      +K  GPRYCPSIE K+++F  ++ H 
Sbjct: 280 LEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYCPSIESKVIKFPHKDYHY 337

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEGL++D++YPNGIS  +PEEIQ + +R +PG E V + +PGY +EYD+I+P+EL 
Sbjct: 338 VWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMTQPGYGVEYDFIDPRELK 397

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TLETK ++GL+LAGQINGTTGYEEAAAQG +AGIN+     +   +   R D  + ++I
Sbjct: 398 STLETKLVNGLYLAGQINGTTGYEEAAAQGCIAGINAGLSYLQKPLLELKRPDGLVAILI 457

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KGV EPYRMFTSR+E+R S+R DNAD+RLT  G +LG + E R + F K   ++ 
Sbjct: 458 DDLITKGVEEPYRMFTSRSEFRFSIRSDNADDRLTQKGYELGVVSEERYQFFKKEADQFK 517

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYPDFSIQNLFS--------I 521
            +++ L  L L+ K  +      K D +     + ++ LSYP  SI ++          +
Sbjct: 518 DIKNALSVLKLSGKQWAPGLQGLKTDTRENDKVSGWKLLSYPGVSINDILPHMSHFMTQV 577

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL--SNE 579
            P  +  S  +  ++ + S Y     R+       +  +   +P++F Y +  +L  S+E
Sbjct: 578 PPCLQNVSMRLQNKIDVVSDYDPIMYREKANLNTFESLDMYKLPQNFTYDNSGSLKISHE 637

Query: 580 LKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           +   L+I++P  + QA  ++G+TP A+N L
Sbjct: 638 VCTILNIVQPTTIGQAQSLQGITPTAINEL 667


>gi|254672744|emb|CBA06743.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha275]
          Length = 518

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 220/513 (42%), Positives = 312/513 (60%), Gaps = 6/513 (1%)

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            + +QENLD+ Q  V     + + IS ++       +   VVLT GTFL G IHIG    
Sbjct: 1   MLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENY 60

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
             GR GD  + SL     + +   GRLKTGTP R+DG+TI + +  +Q  D  +   S  
Sbjct: 61  EGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVMSVR 120

Query: 230 TD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
            + ++  RQ+ C IT TN +TH II      S +++G I+  GPRYCPSIEDKI RF ++
Sbjct: 121 GNAEMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADK 180

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           + HQIFLEPEGL T   YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P
Sbjct: 181 DSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDP 240

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  +LETK I+GLF AGQINGTTGYEEAAAQGL+AG N+ +   + D +   R  +Y+
Sbjct: 241 RNLKASLETKTIAGLFFAGQINGTTGYEEAAAQGLLAGANAVQYVREQDPLLLRREQAYL 300

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE + + F +  
Sbjct: 301 GVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKIGLVGEAQWRMFNEKR 360

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
           +        LK+   T + L+      +  ++  +    ++ L  P+     L ++    
Sbjct: 361 EAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSREANLHDLLRRPNLDYAALMTLEGAM 420

Query: 526 RK--FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEK 583
                S+ V+E+++I+  Y  Y  RQ  E    +  E   +P+D DYS +  LS E+++K
Sbjct: 421 PSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPEDIDYSKVKGLSAEVQQK 480

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           L+  KP  + QAS+I G+TPAA+ LL++++K+ 
Sbjct: 481 LNQHKPETVGQASRISGVTPAAVALLMVHLKRG 513


>gi|260808243|ref|XP_002598917.1| hypothetical protein BRAFLDRAFT_79848 [Branchiostoma floridae]
 gi|229284192|gb|EEN54929.1| hypothetical protein BRAFLDRAFT_79848 [Branchiostoma floridae]
          Length = 648

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/601 (45%), Positives = 366/601 (60%), Gaps = 44/601 (7%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T L+THK  TIG MSCNP+ GG+GKGHL++EIDALDG+  R+ D +GIQ++VLN +KGP
Sbjct: 59  NTLLVTHKLDTIGEMSCNPSFGGVGKGHLMKEIDALDGVCARICDKSGIQYKVLNTRKGP 118

Query: 90  AVRGPRTQADRELYRLAMQREILS-QENLDVIQGEVAGFN----------TEKNIISSIV 138
           AV GPR Q DR LY+  +Q E+ S   NL  +   V                K ++  + 
Sbjct: 119 AVWGPRAQIDRSLYKKHLQDELFSDTPNLTFLARPVEDLILTPNSQPDSDVCKQLVRGVR 178

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
           + D   I   TVVLTTGTFLRG I+IG    PAGR+GD+P+  L  S     F  GRLKT
Sbjct: 179 LDDGQCIHGDTVVLTTGTFLRGQINIGLETRPAGRVGDAPAIGLARSLEDAGFTVGRLKT 238

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIME 255
           GTP R+DG+TI +     Q  D+   PFSF+ D +      Q+ C +T TN    +II++
Sbjct: 239 GTPPRVDGRTIDYTHLSPQPGDDPPQPFSFLNDAVWIKPEDQVLCHLTHTNSTVDKIILD 298

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           N+        +    GPRYCPSIE K++RF +R  HQI+LEPEGL+T VVYPNGIS  LP
Sbjct: 299 NLHLDRHVLEET--TGPRYCPSIESKVLRFPKRP-HQIWLEPEGLDTPVVYPNGISCTLP 355

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
            E+Q   +R I GLE+  +IRPGY +EYDY++P++L  +LET +I  LF AGQINGTTGY
Sbjct: 356 AEVQVDMVRQIRGLERAEVIRPGYGVEYDYMDPRQLKASLETHRIKNLFFAGQINGTTGY 415

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAAAQG++AGIN+  K         SRT+ YIGV+IDDLT++G  EPYRMFTSRAE+R+
Sbjct: 416 EEAAAQGIIAGINAVLKVQNRPAFTVSRTEGYIGVLIDDLTTQGTNEPYRMFTSRAEFRL 475

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF 495
           SLRPDNAD RLT  G + GC+   R  RF       +    LL                 
Sbjct: 476 SLRPDNADERLTEKGHQAGCVSHYRYHRFMDIKHSLDSSLQLLN---------------- 519

Query: 496 KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF--SSLVIERLQIESSYAAYTGRQMIEA 553
                   A++ L YPD +I  L  + P+ R    +  +  RLQIE+ Y+    +Q  E 
Sbjct: 520 --------AFDLLKYPDMTIARLGDVVPELRHLVPNRQLCNRLQIEAMYSCMLKKQEQEI 571

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +E++ +E   +P + D++ L  +S E+ EKL++ +P  +  AS+I G+TPAA+  LL Y+
Sbjct: 572 QEVRRDEAMTLPDNLDFTRLR-VSTEVIEKLALTRPQTIGAASRIPGITPAAMVQLLRYV 630

Query: 614 K 614
           K
Sbjct: 631 K 631


>gi|206603437|gb|EDZ39917.1| Glucose-inhibited division protein A [Leptospirillum sp. Group II
           '5-way CG']
          Length = 605

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/619 (42%), Positives = 365/619 (58%), Gaps = 24/619 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +DV++IGGGHAG EAAA ++++G+ T L+T     IG MSCNP++GG+GKGH+V EI+
Sbjct: 2   KIWDVVIIGGGHAGIEAAAASSRMGSETLLVTLHLDLIGQMSCNPSVGGIGKGHIVAEIE 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G M ++ADA+G+QF++LN +KG AV+  R Q DR  YR   +  + +  NL   QGE
Sbjct: 62  AMGGAMSKLADASGLQFKMLNTRKGYAVQALRVQCDRYRYRQQARLLLENYPNLFFRQGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G+  + ++++S+++ D + I   + VLTTGTFL G +H+G+  +  GR G+  ++ L 
Sbjct: 122 VVGWKLKGSLVTSVLLHDETEIFARSFVLTTGTFLSGKLHVGERLVEGGRGGEKNASHLS 181

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQI 238
           +          GRLKTGTP RL GKTI +   + Q  D   + FS   D         Q 
Sbjct: 182 SRLQGDLGLSVGRLKTGTPPRLSGKTIDFSCMDIQPGDNPPVFFSHNPDNNRFFFDGPQY 241

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C +T TN +T  II EN+  S +YSG IK  GPRYCPSIEDKIV+F ER  H +F+EPE
Sbjct: 242 PCYLTSTNHQTADIIRENLSRSPLYSGKIKGIGPRYCPSIEDKIVKFPERQSHHVFIEPE 301

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           G   D  YPNGIST+LP ++Q Q + +IPGLE   I RPGYA+EYD++ P +L  +L+  
Sbjct: 302 GAGVDEFYPNGISTSLPVDVQEQIVHSIPGLENAQITRPGYAVEYDFVFPDQLDLSLKVA 361

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            +  +FLAGQINGTTGYEEAA QGLVAGIN+   +         R  SYIGVMIDDL S+
Sbjct: 362 HLDNVFLAGQINGTTGYEEAAGQGLVAGINAGLLAKGKMPWIPDRALSYIGVMIDDLVSQ 421

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAE R+ +R  NAD+R+TPIG  LG + E + + F K    ++ L+ +L
Sbjct: 422 GVDEPYRMFTSRAENRLLIRHHNADDRMTPIGQSLGVVPESQWRIFEKKRDSFSQLKKIL 481

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL-- 536
           +S                 DGK    ++ L  PD  + +           S     ++  
Sbjct: 482 QSHR--------------TDGKNF--FQALKQPDVHLDDFLEHSFSDIYASWPRFWQIGF 525

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQAS 596
           + E  Y  Y      + +++K  E   IP+ F  S  P +S E+  +L    P    +A 
Sbjct: 526 ESEIKYEGYIRISEKKTQDLKG-EDYPIPEGFWNSPPPGISREIFTRLVKASPRTFREAM 584

Query: 597 KIEGMTPAALNLLLIYIKK 615
            I GMTP AL  L   +++
Sbjct: 585 HIRGMTPGALESLRTKLRQ 603


>gi|254511824|ref|ZP_05123891.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium KLH11]
 gi|221535535|gb|EEE38523.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhodobacteraceae bacterium KLH11]
          Length = 532

 Score =  626 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/525 (52%), Positives = 364/525 (69%)

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           ++GPR QADR LYR AM +E   +ENL VI GEV  F  + N ++ + + D S I   TV
Sbjct: 1   MQGPRAQADRALYRAAMVKETRQRENLSVIAGEVVDFVMDGNRVTGVKLADGSEIPARTV 60

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT+GTFLRGVIHIG +  P GRMGD PS  L      F     RLKTGTP RLDG+TI 
Sbjct: 61  ILTSGTFLRGVIHIGDVSRPGGRMGDRPSVKLAERLDGFALPMARLKTGTPPRLDGRTIN 120

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           WD  E+Q  D     FSF+++ +T  QI CGIT TN ETH II  N+  SA+Y G I   
Sbjct: 121 WDILERQDGDAEPTLFSFLSNTVTAPQIACGITHTNAETHEIIERNLSRSAMYGGRIDGI 180

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDKIVRF ++  HQIFLEPEG++   VYPNGIST+LPEE+Q  ++R+I GLE
Sbjct: 181 GPRYCPSIEDKIVRFADKESHQIFLEPEGVHDHTVYPNGISTSLPEEVQIDYVRSIRGLE 240

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           + NII+PGYAIEYDY++P+ L  +L    ISGL+LAGQINGTTGYEEAAAQGLVAG+N+A
Sbjct: 241 QANIIQPGYAIEYDYVDPRVLKASLSLPDISGLYLAGQINGTTGYEEAAAQGLVAGLNAA 300

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
            +S +   I F+R+DSYIGVM+DDLT++GV EPYRMFTSRAE+R+SLR DNAD RLTPIG
Sbjct: 301 LESQERGPIHFTRSDSYIGVMVDDLTTRGVAEPYRMFTSRAEFRLSLRADNADQRLTPIG 360

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
            + GCI E RQ  FAK +++    +  L +   T K +++  I+  QDG  R     L++
Sbjct: 361 EEHGCISEERQVIFAKKLEKLEVAKVKLAARTYTPKEINAAGITVNQDGNKRDGMAVLAF 420

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           PD + +++ ++ P+     + +  +++ ++ YA Y  RQ  + + +K +E   IP+DFDY
Sbjct: 421 PDVTFEDVVALEPNLADTEAEIRRQIERDALYANYIARQQRDVEAMKRDEAHEIPRDFDY 480

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            +L  LS E+K+KLS  KP N+ QA ++EG+TPAAL L+L  +++
Sbjct: 481 FALDGLSAEMKQKLSEAKPENIAQAGRVEGVTPAALTLVLAKLRR 525


>gi|260654353|ref|ZP_05859843.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jonquetella anthropi E3_33 E1]
 gi|260630986|gb|EEX49180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Jonquetella anthropi E3_33 E1]
          Length = 597

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 228/590 (38%), Positives = 322/590 (54%), Gaps = 4/590 (0%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GAS  L+    S +  M CNP+IGG  KGHLVREI AL G   R ADA+ I  R LN  
Sbjct: 1   MGASVLLVAQDLSRVAFMPCNPSIGGPAKGHLVREISALGGEQARAADASAIMTRWLNTS 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           KG AVR  R Q D   Y       +     L+++Q EV G   +   +  +  +    I 
Sbjct: 61  KGAAVRALRCQCDLNDYGRYYFARLTETPGLELLQDEVTGLIYDDWAVLGVRTRFGLEIP 120

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              V+LTTGT LRG+IH+G +  P+G +G   S  L +   K    T RLKTGTP RL  
Sbjct: 121 AKRVILTTGTHLRGLIHVGLVNYPSGPVGQQASVRLADELAKMGLPTFRLKTGTPPRLHA 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
            +I W   E+Q  ++    F F      +++  C + RTN ETHRI+ +++  S I    
Sbjct: 181 DSIDWSVLERQEGEDTPECFDFWGTPAVHKEAFCAVLRTNKETHRIVTDHLDESPIVQRV 240

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I   GPRYCPSIE K++ F  ++ H +FLEP       +Y    ST+LP  +Q   + ++
Sbjct: 241 ITGVGPRYCPSIESKVIAFPNKDSHPLFLEPVDRLGKEIYVQNFSTSLPASVQWPMVHSL 300

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           PG  +  I++PGYAIEYD +NP  L P LE K++ GLF AGQINGT+GYEEAAAQGL+AG
Sbjct: 301 PGCGRAKILKPGYAIEYDALNPLGLTPWLERKEVPGLFCAGQINGTSGYEEAAAQGLLAG 360

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
           IN+       + +   R ++Y+GV++DDL +KG  EPYRM TSR EYR+ LR DNAD RL
Sbjct: 361 INAVLSLRGEEPLVLGRHEAYLGVLVDDLVTKGTDEPYRMLTSRCEYRLLLRHDNADRRL 420

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSIS--FKQDGKTRTA 504
              G+ LG + + +           +     L SL LT++ +     +   +  G+  TA
Sbjct: 421 AAKGVALGLVSQSKWDELRHRWDREDREFDRLGSLKLTAQQVDGVLTACQSRPTGQGMTA 480

Query: 505 YEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
              L  P+ + Q L ++   A + +    + + +   Y  Y  RQ + A+ +   E   I
Sbjct: 481 AALLRRPEVTYQALAAV--GAGELTGDEADAVAVRVKYEGYVKRQELAAQSMLRLEGLEI 538

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P+DFD+  L    +E  EKL  ++P  L QAS+I G+TPA L  L + ++
Sbjct: 539 PQDFDFKLLNGALSESVEKLERVRPRTLGQASRISGVTPADLQHLAMILR 588


>gi|213409413|ref|XP_002175477.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Schizosaccharomyces japonicus yFS275]
 gi|212003524|gb|EEB09184.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Schizosaccharomyces japonicus yFS275]
          Length = 674

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/629 (42%), Positives = 384/629 (61%), Gaps = 16/629 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGGHAG EAAA +A+ G  T LIT     IG MSCNPA GG+GKG L+REIDALDG
Sbjct: 30  VIVIGGGHAGVEAAAASARSGVKTWLITKSKRDIGKMSCNPAFGGIGKGTLLREIDALDG 89

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQGEVA 125
           ++GRV D + IQFR+LN  KGPAV  PR Q DR+ ++  MQ  + S +   L +I+G+V 
Sbjct: 90  VVGRVCDESAIQFRLLNRSKGPAVWSPRAQMDRKAFQRNMQSTLASYDLKLLQIIEGDVV 149

Query: 126 GFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             N      +K  IS++++ D +    ++VV+ TGTFL   +HIG   IP GR+G++PS 
Sbjct: 150 DINVNTTGADKPFISNVLLADGTKFDATSVVIATGTFLSAELHIGHKSIPGGRIGENPSC 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNR 236
           +L ++  K  F   RLKTGTP RL   +I   K   ++ D++  PFS++  +     +  
Sbjct: 210 ALSDTLRKLGFRIKRLKTGTPPRLASHSIDITKMIPEYGDDQPAPFSYLNSRDNFQPSLP 269

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q  C +T TN  TH I+ +N+  +   +  +    PRYCPSIE KIVRF  R  H ++LE
Sbjct: 270 QRPCYVTYTNATTHEIVRKNMHLAPHMAA-VHINSPRYCPSIETKIVRFPLRERHIVWLE 328

Query: 297 PEGLNTD-VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           PEG + D + YPNG+S +LPE++Q Q IR+I GL+   I++P Y + YDY++P +L  +L
Sbjct: 329 PEGFDEDALWYPNGLSNSLPEDVQLQLIRSISGLKDAVIVQPAYGVMYDYLDPLQLNASL 388

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           ET+ +SGLFLAGQINGTTGYEEAAAQG++AGIN+A+ +   + +   R  + +GV++DDL
Sbjct: 389 ETQLVSGLFLAGQINGTTGYEEAAAQGVLAGINAAKYTKNEELVVIPRKVAMLGVLVDDL 448

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG--ERRQKRFAKYIQEYNF 473
            +KGV EPYRMFTSR+EYR++ R DNAD RLTP+   +G +     R   F   +++   
Sbjct: 449 VTKGVTEPYRMFTSRSEYRLTTRADNADERLTPLAKNIGLLDNNPNRYTLFQSMLKQRQK 508

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
           +    K   LT+        +  QDGK RT +E L  P F    L  + P  ++ S   +
Sbjct: 509 VIEAAKEFSLTAHEWKQLGYTVNQDGKHRTLWELLRNPTFDRMRLLKLIPSTKELSQTQL 568

Query: 534 ERLQIESSYAAYTGRQMIEAKEIK-FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            R+ +E+ Y  Y  +Q  E + +   EE  +IP D DY+++  +S E    L  +KP +L
Sbjct: 569 NRILVEALYTTYIEQQESENRFLNFREEATIIPNDVDYTAIGGISTEEINLLQCIKPSSL 628

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            Q  +I G+ P  +  LL ++++N  K  
Sbjct: 629 AQLKQISGIKPGTIIRLLRHVRRNASKEQ 657


>gi|119331162|ref|NP_001073232.1| protein MTO1 homolog, mitochondrial [Gallus gallus]
 gi|53136448|emb|CAG32553.1| hypothetical protein RCJMB04_29e2 [Gallus gallus]
          Length = 646

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 254/606 (41%), Positives = 367/606 (60%), Gaps = 30/606 (4%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL GR+ D AG+ ++VLN  KGPAV G R Q DR  Y
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCGRICDVAGVHYKVLNRSKGPAVWGLRAQIDRRRY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSIVMQDNSMIRCSTVVLTTG 155
           R  +Q+EILS   L V +  V              K  ++ +V+ D S +   +V+LTTG
Sbjct: 61  RDGVQKEILSTPLLTVREASVEDLLLTEPETNHPGKCQVTGVVLGDGSTVSAGSVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRGVI +G    PAGR+GD P+  L  +  K  F  GRLKTGTP RL   TI +   E
Sbjct: 121 TFLRGVILMGLETHPAGRLGDQPAVWLAQTLEKLGFTVGRLKTGTPPRLAKDTINFSGLE 180

Query: 216 KQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           ++  D   +PFSF++  +      Q+ C +T TNL+  +I+++N+  +       +    
Sbjct: 181 ERVPDNPPVPFSFLSKAVWIKPEDQLLCYLTHTNLKAQQIVLDNLHLNDHVRETNEGPPV 240

Query: 273 R----------YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
           R          YCPS E K++RF  R  HQ++LEPEGL +DV+YP G+S  LP E+Q Q 
Sbjct: 241 RMWPHLRLLKAYCPSFESKVLRFPNRE-HQVWLEPEGLESDVIYPQGLSMTLPPELQEQV 299

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           IR+I GLEK  I++PGY ++YD+++P++L  +LE++ +  LF AGQINGTTGYEEAAAQG
Sbjct: 300 IRSIRGLEKARILQPGYGVQYDFLDPRQLTASLESRLVQRLFFAGQINGTTGYEEAAAQG 359

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AGIN+  +         SRT+ Y+GV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNA
Sbjct: 360 VIAGINACLRVQGKPPFIVSRTEGYVGVLIDDLTTLGTTEPYRMFTSRVEFRMSLRPDNA 419

Query: 443 DNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKT 501
           D RLT  G  + GC+ ++R ++  +         + LKSL  +    S            
Sbjct: 420 DARLTHRGFEEAGCVSQQRYEQAVQMRAALEDGIATLKSLQFSISKWSHLVPEVPISSNR 479

Query: 502 R---TAYEFLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYTGRQMIEAKE 555
           R   +A++ L YP+ +++ L    P+  RK +    + ERL+IE++Y      Q  E +E
Sbjct: 480 RSPLSAFDILRYPEANMEILARAIPEPLRKLAEWRELSERLKIEAAYEWCVVNQQQEIEE 539

Query: 556 IKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           ++ +E   +P+D DY ++  +LS E++EKL+  +P  +   S+I G+TPAA+  LL ++K
Sbjct: 540 VRRDEALRLPEDIDYFAIDASLSAEVREKLNSSRPQTIGAVSRIPGVTPAAIINLLRFVK 599

Query: 615 KNTVKL 620
              +K 
Sbjct: 600 AEKLKA 605


>gi|40557589|gb|AAR88089.1| glucose inhibited division protein A [Sweet potato little leaf
           phytoplasma]
          Length = 620

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 251/595 (42%), Positives = 346/595 (58%), Gaps = 9/595 (1%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y  IV+GGGHAG EAA   AK    T LIT     I S  CNP+IGG  KG +VREID
Sbjct: 31  KYYQSIVVGGGHAGVEAALALAKQSHKTLLITGNLQQIASYPCNPSIGGPAKGVVVREID 90

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+MG+ AD   IQ ++LN  KGPAVR  R Q D+  Y + +   +    NL +++  
Sbjct: 91  ALGGIMGKAADICQIQMKMLNTSKGPAVRSLRAQIDKIKYPMFILETLKKTLNLTLMEAL 150

Query: 124 VAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           V           +  + + +  +I    V+LTTGT+L   I IG   I +G      + +
Sbjct: 151 VEHLIIPENDLCVKGVKLTNGEVIYSDIVILTTGTYLTSKILIGSQVINSGPNKAPTTYN 210

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE-- 239
           +    +KF  +  RLKTGTP R+   TI + +T +Q  D+ L  FS     I N  ++  
Sbjct: 211 ISKQLIKFGMEVIRLKTGTPPRVHKDTIDYTQTVEQSGDKVLQTFS-SPPVIDNLGVQKL 269

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN  TH++I +N+  SA+YSG + S GP YCPSIEDKIVRF ++N HQ+F+EPE 
Sbjct: 270 CFLTHTNENTHQLIRQNLHKSAMYSGYVCSSGPPYCPSIEDKIVRFYDKNRHQLFIEPES 329

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L +D +Y  G+S ++P E+Q + ++TIP   K  II+  YAIEYD  NP +LF TLE+KK
Sbjct: 330 LLSDEMYLQGLSMSMPSEVQEKILKTIPAFSKAKIIKYAYAIEYDAFNPNQLFHTLESKK 389

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           I  LFLAGQINGT+GYEEAA QGL+AGIN+A K          R ++YIGV+IDDL +KG
Sbjct: 390 IKNLFLAGQINGTSGYEEAACQGLIAGINAALKLQNKSPFILKRNEAYIGVLIDDLINKG 449

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
             EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +          + N+L+  L 
Sbjct: 450 TYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNKQMQINYLKEKLH 509

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIE 539
           +  L + +L   +I    D +  + Y+ L   D     L +    A ++S  V+E++ I+
Sbjct: 510 NFYLDADSLYKFNI--NSDSRRISLYQLLKRSDLKEDILNNFF--ASQYSVDVLEQVGIQ 565

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
             Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL  +KPFN+ Q
Sbjct: 566 IKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKLXKIKPFNIAQ 620


>gi|196011978|ref|XP_002115852.1| hypothetical protein TRIADDRAFT_30217 [Trichoplax adhaerens]
 gi|190581628|gb|EDV21704.1| hypothetical protein TRIADDRAFT_30217 [Trichoplax adhaerens]
          Length = 651

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 286/636 (44%), Positives = 394/636 (61%), Gaps = 28/636 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGGHAG E+AA AA+ G+   LI+H  + IG MSCNP+ GG+GKGHL+REIDAL
Sbjct: 18  YDVIVVGGGHAGTESAAAAARNGSRVCLISHDLTKIGEMSCNPSFGGIGKGHLIREIDAL 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GR+ D +GI ++VLN +KGPAV G R Q DR LYR  MQ EI S  NL ++QG V 
Sbjct: 78  DGLCGRICDLSGIHYKVLNKRKGPAVWGLRAQMDRNLYRSNMQVEIKSTPNLSLLQGAVV 137

Query: 126 GFNT----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   +K +  + V+ + S+I+  +VVLTTGTFLRG I+IG  K  +  +    +N 
Sbjct: 138 DLILSSDGDKQLGRNYVLHNGSIIKARSVVLTTGTFLRGKIYIG--KTLSIFLNRDVTNF 195

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQI 238
           + + +   D    R+  GTP RLDG+TI + K   Q  DE+  PFSF+   +      Q+
Sbjct: 196 IDHEYEIMDPLGNRVIHGTPPRLDGRTIDYKKLVIQHGDEKPTPFSFLNRAVKIEPAEQL 255

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR-------YCPSIEDKIVRFGERNGH 291
            C +T TN  TH II  ++  +     ++   GPR       YCPSIE K++RF  RN H
Sbjct: 256 PCFLTLTNSNTHSIITRHLHLTPHIKEEVC--GPRQYLLFMQYCPSIESKVIRFRGRN-H 312

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEG ++ +VYPNGIS  LPE IQ   IR++ GLE V I++ GY +EYDYI+P++L
Sbjct: 313 QIFLEPEGFDSSIVYPNGISCTLPENIQKAMIRSVHGLEDVEIVQTGYGVEYDYIDPRQL 372

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            P+LET+K+SGLF AGQINGTTGYEEAAAQG++AGINS+     +  +   R D YIGV+
Sbjct: 373 KPSLETRKVSGLFFAGQINGTTGYEEAAAQGIIAGINSSLMVKGMSPLILDRADGYIGVL 432

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           IDDLT++G  EPYRMFTSRAE+R+ LRPDNAD RLT  G K+G + E+R ++  K   ++
Sbjct: 433 IDDLTTRGTTEPYRMFTSRAEFRLRLRPDNADLRLTEKGYKVGIVREQRFEKMVKIKTKF 492

Query: 472 NFLRSLLKSLVLTSKNLSST-SISFKQDGKT-----RTAYEFLSYPDFSIQNLFSICP-D 524
           +   + L+ L  +  +  +  ++S  +   T      +  E L     S+ ++    P +
Sbjct: 493 DKAINTLRELKFSESSWKARCNLSGMRHSVTKVNFFFSGLEMLINSRVSLSDISRGFPAE 552

Query: 525 ARKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
            R       +  R++IE SYA    RQ  +  E++  E   +P D DY+ L  L  E KE
Sbjct: 553 FRDIVEDDYLCNRIEIEGSYANAIERQNKDVSELRRLEYLALPDDLDYTRLGFLDEEEKE 612

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           KLS + P  L  AS+I+G++ ++L  LL ++KK   
Sbjct: 613 KLSTVAPRTLGSASRIDGISASSLVQLLKFVKKYKQ 648


>gi|38197078|gb|AAH05808.2| MTO1 protein [Homo sapiens]
          Length = 653

 Score =  621 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/626 (40%), Positives = 370/626 (59%), Gaps = 48/626 (7%)

Query: 43  SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
            MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+L
Sbjct: 10  QMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKL 69

Query: 103 YRLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSIVMQDNSMIRCSTVVLTT 154
           Y+  MQ+EIL+   L V +G V            T K  +S +V+ D S +   +V+LTT
Sbjct: 70  YKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTT 129

Query: 155 GTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
           GTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +   
Sbjct: 130 GTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSIL 189

Query: 215 EKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
            K   D   IPFSF  + +      Q+ C +T TN     I+++N+  ++         G
Sbjct: 190 NKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RG 247

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK
Sbjct: 248 PRYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEK 306

Query: 332 VNIIRP-------------------------GYAIEYDYINPKELFPTLETKKISGLFLA 366
             +I+P                         GY ++YDY++P+++ P+LET  +  LF A
Sbjct: 307 AKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFA 366

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRM
Sbjct: 367 GQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRM 426

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           FTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S
Sbjct: 427 FTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLS 486

Query: 486 KNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIE 539
                                A + L Y +  + +L    P+  +K++    + ERL+IE
Sbjct: 487 SKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIE 546

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASK 597
           ++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+
Sbjct: 547 ATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASR 606

Query: 598 IEGMTPAALNLLLIYIKKNTVKLNEI 623
           I G+TPAA+  LL ++K    + + +
Sbjct: 607 IPGVTPAAIINLLRFVKTTQRRQSAM 632


>gi|55961491|emb|CAI14882.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119569149|gb|EAW48764.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_e [Homo sapiens]
          Length = 643

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/625 (40%), Positives = 370/625 (59%), Gaps = 48/625 (7%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  MQ+EIL+   L V +G V            T K  +S +V+ D S +   +V+LTTG
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTG 120

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           TFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGTP R+  ++I +    
Sbjct: 121 TFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILN 180

Query: 216 KQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           K   D   IPFSF  + +      Q+ C +T TN     I+++N+  ++         GP
Sbjct: 181 KHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGP 238

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 239 RYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 297

Query: 333 NIIRP-------------------------GYAIEYDYINPKELFPTLETKKISGLFLAG 367
            +I+P                         GY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 298 KVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 357

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  EPYRMF
Sbjct: 358 QINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMF 417

Query: 428 TSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           TSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   S 
Sbjct: 418 TSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSS 477

Query: 487 NLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIES 540
                               A + L Y +  + +L    P+  +K++    + ERL+IE+
Sbjct: 478 KWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEA 537

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKI 598
           +Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS+I
Sbjct: 538 TYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRI 597

Query: 599 EGMTPAALNLLLIYIKKNTVKLNEI 623
            G+TPAA+  LL ++K    + + +
Sbjct: 598 PGVTPAAIINLLRFVKTTQRRQSAM 622


>gi|50552478|ref|XP_503649.1| YALI0E06941p [Yarrowia lipolytica]
 gi|49649518|emb|CAG79231.1| YALI0E06941p [Yarrowia lipolytica]
          Length = 688

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 266/637 (41%), Positives = 370/637 (58%), Gaps = 37/637 (5%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAGCEA+A AA+ GA T L+T K   IG+ SCNP+IGG+GKG LV E+DA+DGLMGRVAD
Sbjct: 47  HAGCEASAAAARSGARTLLVTPKFDNIGTCSCNPSIGGIGKGTLVTEVDAMDGLMGRVAD 106

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT----- 129
            AGI F++LN  +G AV G R Q DR++Y+  MQ+ I    NL+V++G V    T     
Sbjct: 107 KAGIHFKMLNRSRGFAVWGLRAQIDRKIYKKEMQQLIRDYPNLEVLEGTVEDLLTTPEAT 166

Query: 130 -----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I+ + ++    I    VV+TTGTFL G IHIG    P+GRMG+  +  + N
Sbjct: 167 PDAVKSYGSIAGLTLESGETINTEKVVITTGTFLGGEIHIGLEAYPSGRMGEKATFGISN 226

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI----------- 233
           +  +  F  GRLKTGTP R+D  TI +     +  DE   PFS++ D +           
Sbjct: 227 TLREVGFMLGRLKTGTPPRIDSTTIDYSTMLPELQDEDPFPFSYLNDDVPAAKTDGSVNE 286

Query: 234 ---------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                     N  + C   +T   TH +I +N+  S     D+K  GPRYCPSIE KI+R
Sbjct: 287 ETPAELRGPNNHSVVCYKAKTVKATHDLIRDNLDKSIHIREDVK--GPRYCPSIESKIIR 344

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F +++ H I++EPEGL+T  +YPNGIST LP E Q Q ++TIPG E V + +PGY +EYD
Sbjct: 345 FADKDSHVIWVEPEGLDTTTIYPNGISTTLPAETQLQVLKTIPGFENVTMTQPGYGVEYD 404

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Y++P+EL  TLETK + GL+LAGQINGTTGYEEAAAQG++AG N+  ++   +     R+
Sbjct: 405 YVDPRELKNTLETKLVHGLYLAGQINGTTGYEEAAAQGIIAGFNAGLQAQNKEPFTMRRS 464

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
           D YIGV+IDDL +KGV EPYRMFTSR+E+R S+R DNAD RLT    + G +  RR  R 
Sbjct: 465 DGYIGVLIDDLITKGVSEPYRMFTSRSEFRFSVRADNADERLTVKAFERGLVDSRRVSRL 524

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTS----ISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
            +  +    ++ + +S  LT    +            +GK  TA   L         LF+
Sbjct: 525 EQRNEAIADIKKIFESKRLTPTEWNEQLGYKVFPRLVEGK-MTAAHMLLVKGIDDDLLFA 583

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P+  K+   +I R+  E  Y  Y  ++  +   ++ +E   +P++ DY S+  L  E 
Sbjct: 584 TMPELSKYPPRLILRVTTEYRYKMYLDKERQQIASVERDESLKLPENLDYMSMAGLKIEY 643

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           +  L  ++P  L QA +IEG++ +    LL Y+ KN 
Sbjct: 644 RTVLDKVRPATLGQAKRIEGISNSVCFYLLKYVHKNK 680


>gi|242214297|ref|XP_002472972.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727944|gb|EED81849.1| predicted protein [Postia placenta Mad-698-R]
          Length = 612

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 251/590 (42%), Positives = 360/590 (61%), Gaps = 23/590 (3%)

Query: 32  ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            L+T K   IG +SCNP++GG+GKG L+RE+DALDGL GRVAD AGIQF++LN  KG AV
Sbjct: 34  VLLTQKLDNIGELSCNPSMGGVGKGTLMREVDALDGLCGRVADQAGIQFQILNRSKGAAV 93

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
            GPR Q DR LY+  MQ  + +  +LD+    V+    + + I+        +I+CS V+
Sbjct: 94  WGPRAQIDRSLYKQHMQAALHNYPSLDIRSASVSDLVFDHDGIN-AFSDSGEVIKCSQVI 152

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           + TGTFL G IHIG  + PAGR+ ++PS  L  S     F  GRL+TGTPARL   +I +
Sbjct: 153 ICTGTFLSGEIHIGMKRFPAGRINEAPSVGLSGSLRSAGFQLGRLQTGTPARLYKDSIDF 212

Query: 212 DKTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
              E+Q  D    PFSFM  +++N   QI C +T T  ETH+II +N+  S       K 
Sbjct: 213 RNLEQQRGDSTPHPFSFMNSRVSNANNQIMCYLTYTTPETHQIIRDNLHQSVHIQETKK- 271

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPS+E K++RF ++N H ++LEPEG +++++YPNG+S ++PEE+Q    RT+PGL
Sbjct: 272 -GPRYCPSLEAKVIRFPQKNQHVVWLEPEGYDSELIYPNGLSCSMPEEVQLMMYRTVPGL 330

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E V + RP Y +EYDY++P+EL  TLETK+I GLFLAGQINGTTGYEEAAAQG++AGIN+
Sbjct: 331 ENVKLARPAYGVEYDYVDPRELKSTLETKRIKGLFLAGQINGTTGYEEAAAQGVLAGINA 390

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
              +     +  SR D +IG   +           RMFTSR+EYR+++R DNAD RLT  
Sbjct: 391 GMSALHRAPLVLSRADGFIGEQRNHAN--------RMFTSRSEYRMTIRSDNADLRLTEK 442

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
               G I + R K+F    +E   +  LLKS VL+ +              + +AY+ L 
Sbjct: 443 ARNAGAITDERWKQFEATREELTRVTDLLKSHVLSPQ----------VSNISSSAYDMLR 492

Query: 510 YPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFD 569
           +   +I+ LF   P+ +   S ++ R++IE  Y  +  RQ  + +    +E   +    D
Sbjct: 493 HRSVTIEQLFLAIPELKLVDSRILTRVEIEGIYRTHLRRQEADLRVFLEDEGLTLDPHLD 552

Query: 570 YSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           Y  +  LS+E+KE+L  ++P ++  A ++EGMTP ++  LL + K+   +
Sbjct: 553 YEIVEGLSSEVKERLYRVRPTSIGVAKRMEGMTPTSIVSLLKFAKRTRGR 602


>gi|26553620|ref|NP_757554.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma penetrans HF-2]
 gi|38257609|sp|Q8EWN6|MNMG_MYCPE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|26453626|dbj|BAC43958.1| glucose inhibited division protein [Mycoplasma penetrans HF-2]
          Length = 616

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 234/618 (37%), Positives = 332/618 (53%), Gaps = 6/618 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD +VIG GHAG EAA + AK     AL       +G+M CNP+IGG  KG + REID
Sbjct: 2   KKYDCLVIGAGHAGLEAAFILAKKKYKVALFVLDKKLVGNMPCNPSIGGPAKGIVTREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G+    AD   +Q ++LN  KG      R Q D+  Y       I   E +D+I  E
Sbjct: 62  ALGGMQAIAADNTQLQMKLLNSSKGAGTWALRAQIDKLEYSKWFLNRIEENEYIDLIDKE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V         +  +   DN     + +++TTGTFL   IHIG   I  G    + S  L 
Sbjct: 122 VNSIKFVNQKVCGVYTVDNQFFESNYLIVTTGTFLDSSIHIGHKVIKKGPDDFNGSYLLA 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--NRQIECG 241
               + DF T RLKTGTP R+   +I + K + +    +   FS    K    N+Q  C 
Sbjct: 182 KQIKELDFQTIRLKTGTPPRILKNSIDYSKLQIEPGTNKKYSFSHFDRKFLDFNKQEVCY 241

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +  TN + H II  N+  SA+YSG I   GPRYCPSIEDK+VRF ++  HQ+F+EPE  +
Sbjct: 242 LAFTNNKIHEIINNNLDKSAMYSGFITGTGPRYCPSIEDKVVRFNDKERHQLFVEPESKH 301

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            D +Y  G+S++LPE++Q Q ++ I G E   I +  YAIEYD INP +L+PTLETKKI 
Sbjct: 302 LDTIYLGGLSSSLPEDVQEQIVKNIVGFENAVIKKYAYAIEYDAINPIQLYPTLETKKIK 361

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGT+GYEEAA QGL+AGIN   +    + +   R ++YIGV+I+DL +K + 
Sbjct: 362 GLFFAGQINGTSGYEEAACQGLMAGINVLCQLENREPLVLKRNEAYIGVLIEDLINKEIT 421

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +PYR+ TSRAEYR+ LR DNAD RL   G +LG I +     + K ++ +N     L++ 
Sbjct: 422 DPYRLLTSRAEYRLELRNDNADQRLLKYGYELGLISQSHWDEYNKNLENFNNTLKELETS 481

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L     +     +       T YE L  PD+S  ++     +         +++ I   
Sbjct: 482 TLK----NVKEFKYNSRKTNTTLYEILKRPDYSFIDMEPFLKNKNTLDEYWKDKVDIYIK 537

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y   Q     + K  +   +    DY  +P +S E ++KL+ +KP  L QAS++ G+
Sbjct: 538 YGGYIKSQQKIINDTKNIDNIKLSSISDYKDVPNISLEARDKLNKVKPLTLGQASRVSGI 597

Query: 602 TPAALNLLLIYIKKNTVK 619
               L  + +Y++    +
Sbjct: 598 NLVDLINIKLYLENKKKQ 615


>gi|7657947|emb|CAB89205.1| putative glucose inhibited division protein A [Thermus
           thermophilus]
          Length = 596

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 230/604 (38%), Positives = 336/604 (55%), Gaps = 21/604 (3%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAG         LG    L+T     IG M CNPA+GG GK  LV E+ AL GLMGR AD
Sbjct: 13  HAGSRRPG-RRPLGVPGGLVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVALGGLMGRAAD 71

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
           AA I  RVLN  KGPAV+  R Q DR+LY L  Q  +  +  ++V++GEVA    E   +
Sbjct: 72  AAAIHTRVLNRSKGPAVQSLRVQVDRDLYALKAQEILAERP-VEVLRGEVAALWVEGGRL 130

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
             +   D   +    VV+  GTFL GV+  G+   PAGR G+ P+  L  S         
Sbjct: 131 LGVRTVDGRTLPAKAVVVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLKAVGHTLR 190

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRII 253
           R KTGTP R+   ++ + + E       + P SF  +   +  ++    TRT   THR+I
Sbjct: 191 RFKTGTPPRIRADSVDFGRLEVVPP--EVPPGSFTGNPGPHAARLPTWQTRTTARTHRLI 248

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            EN+  S +Y+GDI+  GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  VY  G S++
Sbjct: 249 RENLHLSPLYAGDIQGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTEVYLQGFSSS 308

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           LP E+Q + +R++PG E+  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+
Sbjct: 309 LPPELQEEMVRSLPGFERAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLFSAGQVNGTS 368

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAAAQGL+AG+N+AR +  L  +   R   YIGV++DDL  +G  EPYRM TSR E 
Sbjct: 369 GYEEAAAQGLLAGLNAARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPYRMMTSRVEL 428

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI 493
           R+  R DNAD RLTP+ +  G   +   +R     +        L++L +          
Sbjct: 429 RLLCRADNADERLTPLAVAWGLRPKEDLERVEAKYRRVAAELRRLQALRV---------- 478

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEA 553
                 +  +  ++L  P+ + + L    P +   S     ++++ + YA Y  RQ    
Sbjct: 479 ------EGVSGLQWLRRPENTYRALAERFPPSEPLSPEEAYQVEVRAKYAGYIERQERLR 532

Query: 554 KEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           +++K  E   IP+  D+  +P LS E  EKLS  +P +L +A++I G+  + L  L +++
Sbjct: 533 EKMKDLEAFRIPEGMDFPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRDSDLTALAVHL 592

Query: 614 KKNT 617
           ++  
Sbjct: 593 RRGA 596


>gi|251772738|gb|EES53300.1| glucose inhibited division protein A [Leptospirillum
           ferrodiazotrophum]
          Length = 613

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 267/609 (43%), Positives = 351/609 (57%), Gaps = 26/609 (4%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
           HAG EAA  +A+ G+ T L+T     IG MSCNP++GG+GKGH+VREIDA+ G MG +AD
Sbjct: 19  HAGIEAAYASARQGSRTLLLTLHLDFIGQMSCNPSVGGIGKGHIVREIDAMGGAMGSLAD 78

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
            + +Q RVLN +KG AV+  R Q DR  YR   +R + S   L + QGEV       + +
Sbjct: 79  QSALQLRVLNTRKGAAVQAIRAQCDRHRYRTLARRLLDSHPLLFLRQGEVVSLERSGDRL 138

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF-MKFDFDT 193
           SS+ + D S I    +VLT+GTFL G +HIG      GR G+  S SL      +     
Sbjct: 139 SSLALSDGSRIFFDALVLTSGTFLNGQLHIGLSSTSGGRGGERSSLSLSQFLSEECGLSL 198

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-----RQIECGITRTNLE 248
           GRLKTGTP RL G+++ + + E Q  DE L  FS ++            + C +T T  E
Sbjct: 199 GRLKTGTPPRLHGRSLDFSRMEPQPGDEPLPFFSQLSPPPEGLFFGGSSLPCYLTHTTPE 258

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
           T  II +N+  S +YSG I+  GPRYCPSIEDKIV+F +   H IF+EPEGL+ D  YPN
Sbjct: 259 TRDIIQKNLDRSPLYSGKIRGIGPRYCPSIEDKIVKFPDHLTHHIFIEPEGLDVDEFYPN 318

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           GIST+LP ++Q Q + +IPGLE   I+RPGYA+EYD++ P +L  TL  K    LFLAGQ
Sbjct: 319 GISTSLPVDVQEQILSSIPGLENAIILRPGYAVEYDFVFPDQLHHTLAVKSTPNLFLAGQ 378

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           INGTTGYEEAA QGLVAGIN+AR S  L      R  SYIGVM+DDL +  + EPYRMFT
Sbjct: 379 INGTTGYEEAAGQGLVAGINAARHSQGLSTWTPDRQSSYIGVMVDDLVTHSIDEPYRMFT 438

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           SRAE R+ +R DNA  R+TP  + LG +  ++ + F   I+  N LR+LL S  L  K  
Sbjct: 439 SRAENRLYIRNDNAVERMTPQALALGLLSPQQIEAFNDRIEYQNSLRALLHSSRLEGK-- 496

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLF-SICPDARKFSSLVIERLQIESSYAAYTG 547
                         + +  L  PD +++ L      D      L ++ L+ E  Y  Y  
Sbjct: 497 --------------SLHHRLRSPDVTLRQLLREQAIDFSAIPPLWLDALEQEIKYEGYV- 541

Query: 548 RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALN 607
              I            IP  F    +P LSNE++ +L   +P  L QA  + GMTP A++
Sbjct: 542 --RISMDRWDRMADLPIPPSFFDRDIPGLSNEVRTRLRKSRPTTLHQALSLRGMTPGAID 599

Query: 608 LLLIYIKKN 616
           LL IY+ K 
Sbjct: 600 LLRIYLTKE 608


>gi|328951745|ref|YP_004369080.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinithermus hydrothermalis DSM 14884]
 gi|328452069|gb|AEB12970.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Marinithermus hydrothermalis DSM 14884]
          Length = 608

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/616 (38%), Positives = 347/616 (56%), Gaps = 20/616 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DV+V+GGGHAG EAA  AA+LGA   L+T     IG M CNPA+GG GK  LV EI 
Sbjct: 6   ETFDVLVVGGGHAGIEAAWAAAQLGARVGLVTTNPDRIGLMPCNPAVGGPGKSQLVFEIT 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+ADA  I  R LN  KGPAVR  R Q +R+ Y +  QR +L+  N+  ++GE
Sbjct: 66  ALGGLMGRLADATAIHTRTLNQSKGPAVRSLRVQVERDAYAVEAQRVLLAHPNVQAVRGE 125

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VA    E   +  + + D   +    VVL+ GTFL GV+  G+   PAGR G+ P+  L 
Sbjct: 126 VAHLWIEAGHLCGVQLVDGRRLAGRAVVLSAGTFLSGVVWYGRQSRPAGRQGEPPARFLS 185

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S         R KTGTP R+   ++ +   E    D+    F+  T       +    T
Sbjct: 186 QSLRAVGHRLMRFKTGTPPRIRADSVNYGALEVVPPDDPPGSFT-GTPGPHAAAMPTWTT 244

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           RT   THR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF +++ H +F+EP+G++T 
Sbjct: 245 RTTARTHRLIQENLHLSPLYAGDIEGIGPRYCPSIEDKVVRFADKDSHLLFVEPDGIHTS 304

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +Y  G S++LP E+Q + +R++PG E+  I R  YA+EYD ++P EL P L++KK+ GL
Sbjct: 305 ELYLQGFSSSLPPELQEEMVRSLPGFERAVIQRYAYAVEYDAVDPTELTPGLQSKKLPGL 364

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGL+AG+N+AR +     +   R   YIGV+IDDL  +GV EP
Sbjct: 365 FTAGQINGTSGYEEAAAQGLLAGVNAARFAAGEPEVHLPRESGYIGVLIDDLVHRGVDEP 424

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR E R+  R DNAD R+ P  ++ G   +   +R              L  + +
Sbjct: 425 YRMMTSRVELRLLCRADNADERMVPYAVRWGLRPKADLERVEAKYARVRAELERLARVRV 484

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDARKFSSLVIERLQIESS 541
                         DG +   Y  L  P+ S   L    + P+    +     ++++ + 
Sbjct: 485 --------------DGVSGLHY--LRRPEASYAALLERGLGPEVP-LTPEEAYQVEVRAK 527

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ+   + ++      +P   DY ++  LS E  EKL  ++P  + +A++I G+
Sbjct: 528 YAGYIERQIRLRERLRELSAYRLPAGLDYRTVHNLSREAMEKLERVRPATVAEAARIPGL 587

Query: 602 TPAALNLLLIYIKKNT 617
             + +  LL+++ +  
Sbjct: 588 RDSDITALLVHLARTR 603


>gi|226225436|ref|YP_002759542.1| glucose inhibited division protein A [Gemmatimonas aurantiaca T-27]
 gi|226088627|dbj|BAH37072.1| glucose inhibited division protein A [Gemmatimonas aurantiaca T-27]
          Length = 635

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/634 (39%), Positives = 367/634 (57%), Gaps = 23/634 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  AA+ GA  ALIT     +G +SCNPAIGG+ KG +VRE+DAL
Sbjct: 2   FDVIVIGGGHAGTEAAVAAARSGARVALITGALEQLGQLSCNPAIGGIAKGTVVREVDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M R  D A +QFR+LN  KGPAV  PR Q DR LYR A+++ + +Q NL  +QG VA
Sbjct: 62  GGIMARATDMATVQFRMLNRGKGPAVWAPRAQCDRGLYRRAVRQLLEAQPNLVTMQGMVA 121

Query: 126 GFNTEK---------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKIPAGRMG 175
               +            ++ +   +        VVLTTGTF RG +HI    +I  GR G
Sbjct: 122 RLLFDDAGSLASGATRRVAGVETMEGRRFGARAVVLTTGTFGRGTMHIGTDTRISGGRAG 181

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           ++PS  L          T R KTGTP R+DG+++ + + ++Q ++  L  +S+     T 
Sbjct: 182 EAPSVHLGQQLDAEGLTTERFKTGTPPRIDGRSVDYTRFDRQESEIDLFDYSWSHFWTTP 241

Query: 236 R-----------QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           R           Q+ C +         +I ++I  SA+Y G I S GPRYCPS+EDK+V+
Sbjct: 242 RRTADGAMRSPEQMPCWVGWLEEAGTELIAKHINESAMYGGAIASRGPRYCPSVEDKVVK 301

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           F ++  HQ+FLEPEG +T  +Y NG+ST+LP  +Q   +R++ GLE V + R GYAIEYD
Sbjct: 302 FPDKVRHQLFLEPEGHDTSELYVNGLSTSLPAPVQLAVLRSVHGLEDVRMTRAGYAIEYD 361

Query: 345 YINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           Y  P +L+P+L ++ I GLF AGQ+NGTTGYEEA  QG++AG+N+AR + + + I   R 
Sbjct: 362 YYPPTQLWPSLGSRAIDGLFFAGQVNGTTGYEEAGGQGVMAGLNAARFTQEREPIVLGRE 421

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            SYIGV+I+DLT++GV EPYR+FTSR+E+R+++R DNA +RL P+    G   +   +  
Sbjct: 422 SSYIGVLINDLTTRGVDEPYRLFTSRSEFRLTVRQDNALSRLAPVSEAAGLWQDAELEVL 481

Query: 465 AKYIQEYNFLRSLLKSLVLTS--KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSIC 522
              +        L ++  ++    +    +   +       A E     + ++Q LF   
Sbjct: 482 HARLGAVREALRLAEATSMSPAIADPILEAAGTRPLAHAVRAVELARRSEITLQVLFDAA 541

Query: 523 PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
               +     I   ++E  YA Y  R+ ++A  +  +   ++P   DY+++  LS E ++
Sbjct: 542 GVGAELPRDAIVGAELEIKYAGYFERERLQANRLVAQGAVVLPPTLDYAAMRTLSIEARQ 601

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           K   LKP  L QAS I G++PA L  L++ ++K+
Sbjct: 602 KFERLKPGTLAQASAIPGISPADLQNLMLELRKH 635


>gi|225164332|ref|ZP_03726599.1| glucose inhibited division protein A [Opitutaceae bacterium TAV2]
 gi|224801066|gb|EEG19395.1| glucose inhibited division protein A [Opitutaceae bacterium TAV2]
          Length = 676

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 342/651 (52%), Gaps = 64/651 (9%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA+T L+T    TI  MSCNPAIGG  KG +VREIDAL G M    D  GIQFR+LN  
Sbjct: 1   MGANTLLVTGNVDTIAQMSCNPAIGGQAKGQIVREIDALGGEMAINTDLTGIQFRLLNES 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK----NIISSIVMQDN 142
           KGPAV+ PR Q D++ Y+  ++  +  Q +L V Q  VAG   E       +  +    +
Sbjct: 61  KGPAVQSPRAQCDKKAYQYRLKHTLELQPDLQVFQATVAGLIYENTTAGRKVIGVRTNLD 120

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
                 TVV+TTGTFLRG++HIG  +   GR GD  + +L  SF++   +  RLKTGTP 
Sbjct: 121 IEFVGRTVVVTTGTFLRGLMHIGANQNEGGRAGDFSAKTLSASFLEAGIELQRLKTGTPP 180

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-------------------------- 236
           RL G+++ + K E Q  D R   F+F   +                              
Sbjct: 181 RLLGRSLDFSKMEPQHGDARPTLFAFHDTRDPQDLFHVEQRPHPSPPPPPPPTQTRLGWA 240

Query: 237 ----QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C +T T  +T RI  EN+  SA+YSG+I   G RYCPS EDKIVRF ++  H 
Sbjct: 241 PGSNQLPCWMTYTTADTARIARENLTRSAMYSGNITGTGARYCPSFEDKIVRFADKPRHL 300

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEPEG +TD  Y NG+ST++P ++Q Q +R++PGLE   ++RP YA+EYD+  P +LF
Sbjct: 301 LFLEPEGRSTDEYYVNGLSTSMPFDVQLQLVRSVPGLENAVLMRPAYAVEYDFAPPTQLF 360

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+LE+KK+  LF AGQINGT+GYEEAA QGLVAG+N+  K      +  +R ++Y GV+I
Sbjct: 361 PSLESKKVENLFFAGQINGTSGYEEAACQGLVAGVNAVNKVRGAAPLIIARHEAYTGVLI 420

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           DDL +KG  EPYRMFTSRAEYR+     +A+ RL       G +   R  R  +  +   
Sbjct: 421 DDLVTKGTTEPYRMFTSRAEYRLLFNHGSAELRLLHHARAHGLVSATRLARIEEKKRRIE 480

Query: 473 FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS------------YPDFSIQNLFS 520
           +  + L++  + +   ++       D   R                    P    +N   
Sbjct: 481 YWITTLETTRIPADIAATAGQGTWGDFIRRAGSAAGQGRGGEGGREASPRPPSDAENTIE 540

Query: 521 ------------------ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKR 562
                             +  D       + + +     Y  Y  R+  + +++   EK 
Sbjct: 541 TQEPSKRVDGGLGETSLPLPSDFTALPDELRQEVLYRVGYKGYLEREQRQIEKLSHVEKI 600

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
            IP DFDY ++  L  E  +KL    P+NL QAS+I G+ PA +++L++ +
Sbjct: 601 KIPPDFDYRAVRGLRLESAQKLIAAHPYNLGQASRISGVNPADISILMVAL 651


>gi|55981941|ref|YP_145238.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus thermophilus HB8]
 gi|81170587|sp|Q5SGV8|MNMG_THET8 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|55773354|dbj|BAD71795.1| glucose inhibited division protein A [Thermus thermophilus HB8]
          Length = 597

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 226/590 (38%), Positives = 332/590 (56%), Gaps = 20/590 (3%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KG
Sbjct: 27  VRVALVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVALGGLMGRAADAAAIHTRVLNRSKG 86

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS 148
           PAV+  R Q DR+LY L  Q  +  +  ++V++GEVA    E   +  +   D   +   
Sbjct: 87  PAVQSLRVQVDRDLYALKAQEILAERP-VEVLRGEVAALWVEGGRLLGVRTVDGRTLPAK 145

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
            VV+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   +
Sbjct: 146 AVVVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLKAVGHTLRRFKTGTPPRIRADS 205

Query: 209 IIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           + + + E       + P SF  +   +  ++    TRT   THR+I EN+  S +Y+GDI
Sbjct: 206 VDFGRLEVVPP--EVPPGSFTGNPGPHAARLPTWQTRTTARTHRLIRENLHLSPLYAGDI 263

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           +  GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  VY  G S++LP E+Q + +R++P
Sbjct: 264 QGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTEVYLQGFSSSLPPELQEEMVRSLP 323

Query: 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           G E+  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+
Sbjct: 324 GFERAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLFSAGQVNGTSGYEEAAAQGLLAGL 383

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+AR +  L  +   R   YIGV++DDL  +G  EPYRM TSR E R+  R DNAD RLT
Sbjct: 384 NAARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLT 443

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
           P+ +  G   +   +R     +        L++L +                +  +  ++
Sbjct: 444 PLAVAWGLRPKEDLERVEAKYRRVAAELRRLQALRV----------------EGVSGLQW 487

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ + + L    P +   S     ++++ + YA Y  RQ    +++K  E   IP+ 
Sbjct: 488 LRRPENTYRALAERFPPSEPLSPEEAYQVEVRAKYAGYIERQERLREKMKDLEAFRIPEG 547

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            D+  +P LS E  EKLS  +P +L +A++I G+  + L  L +++++  
Sbjct: 548 MDFPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRDSDLTALAVHLRRGA 597


>gi|171686660|ref|XP_001908271.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943291|emb|CAP68944.1| unnamed protein product [Podospora anserina S mat+]
          Length = 691

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 260/618 (42%), Positives = 370/618 (59%), Gaps = 39/618 (6%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T     +G  SCNP+ GG+GKG ++REIDALDGL GR+ D AG+QFRVLN +KGPAV 
Sbjct: 29  LVTPSLENLGVCSCNPSFGGIGKGTILREIDALDGLAGRIIDKAGLQFRVLNRRKGPAVW 88

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-------------NIISSIVM 139
           GPR Q DR LY+  M+ E+ + ++L+V+ G+V                    + I+ + +
Sbjct: 89  GPRAQIDRALYKKHMKEELTNYKDLEVVTGKVEDIIVSDAGLTEEERAEGARSKITGVRL 148

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
           +   ++   +VV+TTGTFL G IHIG    P+GRMG+  +  L  S  +  F  GRLKTG
Sbjct: 149 ESGEVLPARSVVITTGTFLGGEIHIGLEAYPSGRMGEEATFGLSKSLREAGFKLGRLKTG 208

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENI 257
           TP RL   +I WD  E+Q  D+  +PFS++ DK+     Q++C  T TN  TH I+  N+
Sbjct: 209 TPPRLAKGSINWDILEEQLGDDPPMPFSYLNDKVDVDGHQLKCHATYTNHSTHDIVRANL 268

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             +      +K  GPRYCPS+E KI+RFG ++ H ++LEPEG + +V+YPNG+S  +P +
Sbjct: 269 DRTIHIRETVK--GPRYCPSLESKIIRFGHKDSHIVWLEPEGFDNEVIYPNGLSMTIPAD 326

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
            Q   +RTI GLE V +++PGY +EYDY++P+ L  TLETK ISGLFLAGQINGTTGYEE
Sbjct: 327 AQEALLRTIRGLENVTMLQPGYGVEYDYVDPRSLKRTLETKHISGLFLAGQINGTTGYEE 386

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AA QG++AGIN+ R +  L  +  SR D+YIG+MIDDL +KGV EPYRMFTSR+E+R+  
Sbjct: 387 AAGQGVIAGINAGRTALNLPSVSLSRFDAYIGIMIDDLVTKGVSEPYRMFTSRSEFRLRT 446

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST----SI 493
           R DNAD RLTP+G   G I   R + + +       L SLL+S +L S   ++T      
Sbjct: 447 RSDNADVRLTPLGHSWGVISPSRWESYLETSSSSTALYSLLESTILPSPQWTTTHPLPQT 506

Query: 494 SFKQDGKTRTAYEFLS--YPDFSIQN----------------LFSICPDARKFSSLVIER 535
           +   +G   +  + L   Y   +  N                L    P   +F     ER
Sbjct: 507 NSDINGVKVSGIQMLRKIYEHATTTNLSSSSSPPPLSSSVSALEPTLPAVGEFPPKTQER 566

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
           + IE+ Y  +   Q+ EA     +E  L+P D DY+++  LS   + KL+  +P ++ QA
Sbjct: 567 VAIEAVYEPFVKFQLAEAARAVRDEHLLLPTDLDYTTVTGLSIAEQTKLNETRPESIGQA 626

Query: 596 SKIEGMTPAALNLLLIYI 613
            ++EG+TP  + +LL ++
Sbjct: 627 RRVEGVTPNGVVMLLRHV 644


>gi|325192232|emb|CCA26686.1| tRNA uridine 5carboxymethylaminomethyl modification enzyme gidA
           putative [Albugo laibachii Nc14]
          Length = 671

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 281/611 (45%), Positives = 368/611 (60%), Gaps = 22/611 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            TAL+T K  TIG MSCNP+IGG+GKG LVREIDALDGLMGR+AD AGIQ+ +LN  KGP
Sbjct: 55  KTALVTQKLHTIGEMSCNPSIGGVGKGTLVREIDALDGLMGRIADQAGIQYHMLNASKGP 114

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK--NIISSIVMQDNSMIRC 147
           AVRGPR Q DR+LY+  MQR + S   L + +  V      K  +    I+      I  
Sbjct: 115 AVRGPRAQMDRDLYQKTMQRFLRSIAGLTLEEEAVDDLIVSKSGHRALGIITSSGRCIHS 174

Query: 148 STVVLTTGTFLRGVIHI-GKLKIPAGRMG------DSPSNSLFNSFMKFDFDTGRLKTGT 200
             VV+TTGTFLRG+I++   ++IPAGR        + PS  L  +   F+F  GRLKTGT
Sbjct: 175 RAVVITTGTFLRGMIYLGRDIRIPAGRHRRDCREVEPPSVGLAKTLQDFEFPIGRLKTGT 234

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIECGITRTNLETHRIIMEN 256
           P RLDG TI  +  E Q++D     FS++ D       N+ + C +T TN  TH ++ +N
Sbjct: 235 PPRLDGNTIDTNGLEVQYSDPVPQLFSYLHDLEPPIPQNKLVTCHVTYTNEVTHELVRDN 294

Query: 257 IKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
           +     +S  + K  GPRYCPSI+ K++RF +RN HQI+LEPEGL T +VYPNGISTA P
Sbjct: 295 LDSLPEFSTGNGKGVGPRYCPSIDTKVLRFPDRNRHQIWLEPEGLQTSIVYPNGISTAFP 354

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           E++Q + +RTI GLEK  I+RPGY++EYDYI+P+ L  TLETKKI GL+LAGQINGTTGY
Sbjct: 355 EKLQLELVRTIKGLEKAEIVRPGYSVEYDYIDPRSLHATLETKKIQGLYLAGQINGTTGY 414

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAAAQG++AG+N+   SN L      R D++IGV+IDDLTS G  EPYRMFTSR+EYR+
Sbjct: 415 EEAAAQGVIAGLNAGLTSNDLPPFTLDRADAFIGVLIDDLTSLGTNEPYRMFTSRSEYRL 474

Query: 436 SLRPDNADNRLTPIGMKLG--CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI 493
            LR DNAD RLT    +     +   R ++     Q  +  R  L+S V      +   +
Sbjct: 475 LLRQDNADLRLTRRAYEHHPTLVSTERMRQLDLKTQLMDEGREALQSFVQDPHEWTRFGV 534

Query: 494 SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-----VIERLQIESSYAAYTGR 548
              +DG  R+AY+ LS+P  S   L  I       +       V E L  ES YAA    
Sbjct: 535 KVSRDGVARSAYQILSFPQVSSSTLKEIWKRVPLLNHESTRNKVRELLSTESLYAAQLRS 594

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q  E    + ++   +P   DYS    +S+E +EKL   KP  +  AS+I G+  + L +
Sbjct: 595 QRHEIVMYRDKQHIELPNWIDYSKFSMISSEEREKLQEAKPTTIYAASRISGVRSSTLLM 654

Query: 609 LLIY-IKKNTV 618
           L  Y I +   
Sbjct: 655 LYQYTIHQQKR 665


>gi|94496562|ref|ZP_01303138.1| glucose inhibited division protein A [Sphingomonas sp. SKA58]
 gi|94423922|gb|EAT08947.1| glucose inhibited division protein A [Sphingomonas sp. SKA58]
          Length = 616

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 291/614 (47%), Positives = 397/614 (64%), Gaps = 1/614 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIV+GGGHAGCEAAA AA+ GA+ AL+T   ST+G+MSCNPAIGGLGKGHLVRE
Sbjct: 1   MHKPYDVIVVGGGHAGCEAAAAAARKGAAVALLTFDRSTVGAMSCNPAIGGLGKGHLVRE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DALDGLM R ADA+ I +R+LN  KG AV+GPR QADR  YR A+ R I   + L +I+
Sbjct: 61  VDALDGLMARAADASAIHYRMLNSSKGAAVQGPRVQADRVRYRAAIHRLIDDLDGLTIIE 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE      +   ++ + + D  M+  S +VL TGTFL G +  G  +   GR+G+  + S
Sbjct: 121 GEAQELLLDAGQVTGVRLADGRMLNSSAIVLATGTFLGGKLFCGDTQDVGGRVGERAATS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L       D    RLKTGTP R+DG+TI W + E Q +D+     S +T      Q+ C 
Sbjct: 181 LGTQLRLLDLPIARLKTGTPPRIDGRTIDWARLETQPSDDDGWTMSPVTPNRILPQLACA 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ITRTN  THRII E +  S ++SG I+  GPRYCPSIEDK++RFG+R+GHQIFLEPEGL+
Sbjct: 241 ITRTNDRTHRIIREGLGRSPLFSGAIEGRGPRYCPSIEDKVLRFGDRDGHQIFLEPEGLD 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           + +VYPNGIST+LP +IQ   IR++ GLE   I+  GYA+EYD+++P+ L   LE + +S
Sbjct: 301 SPLVYPNGISTSLPADIQRDMIRSMVGLECAEIVVAGYAVEYDHVDPRALTSALELRAVS 360

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQINGTTGYEEAAAQGLVAG N+A  +     +   R  SYIGVMIDDL  +GV 
Sbjct: 361 GLFCAGQINGTTGYEEAAAQGLVAGANAAAHALGQSPMILDRASSYIGVMIDDLVLQGVT 420

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYRM T+RAEYR+ LR DNA+ RL  +G+  G IG  R +R        + + + L + 
Sbjct: 421 EPYRMLTARAEYRLRLRADNAETRLGSLGLAHGLIGPDRARRLQLRSDWRSRVETAL-AR 479

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            +T+  ++      +QDG  RT  E+  +P+   + L ++ P  +     V   L  ++ 
Sbjct: 480 SMTASEMAKAGAVVRQDGARRTLAEWARFPEVPRRLLMTLAPSLQDAPDDVRNELLEDAH 539

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  RQ  E   ++ +E+ +I  DFD+ S+  LS+E+ E+L   +P  L  A +I G+
Sbjct: 540 YAPYLLRQEAEVAALRRDERVIIAADFDFRSVGGLSSEMIERLEAARPDTLAAAGRIRGI 599

Query: 602 TPAALNLLLIYIKK 615
           TPAAL  +L++ ++
Sbjct: 600 TPAALAAILVHARR 613


>gi|320581620|gb|EFW95840.1| Mitochondrial protein, forms a heterodimer complex with Mss1p
           [Pichia angusta DL-1]
          Length = 797

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/616 (40%), Positives = 359/616 (58%), Gaps = 38/616 (6%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAAA +A+ G  T L+T   S I                   E+DALDG+  RV D +GI
Sbjct: 49  EAAAGSARTGVFTTLVTPDISKI-------------------EVDALDGIAPRVVDMSGI 89

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------- 129
           QF+VLN  +G AV G R Q DR+LY   MQ+ +    NL+++Q  V              
Sbjct: 90  QFKVLNRSRGAAVWGHRAQIDRKLYLTEMQKLLKDYPNLNILQARVEDLVVVPFTNESGD 149

Query: 130 ---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                  I  +V+ D  ++RC  VV+TTGTFL   IH+G    PAGR+G+ PS  L  +F
Sbjct: 150 KNSYDAKICGVVLSDGEILRCEKVVITTGTFLSAEIHLGLDTWPAGRIGEDPSYGLSKTF 209

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRT 245
            +  F  GRLKTGTP R+  KT+ + K  ++  D    P SF+ +      Q+ C  T T
Sbjct: 210 REAGFRLGRLKTGTPPRISAKTVDYSKVAEEPGDNPPEPMSFLNEIPKIEDQLLCYSTYT 269

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               H++I+ N+  S      +K  GPRYCPSIE K++RF ++  H+++LEPEGL+TDV+
Sbjct: 270 TPAMHKLILSNLDKSVHIRETVK--GPRYCPSIESKLIRFSDKTRHRVWLEPEGLDTDVM 327

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           YPNGIS  +P EIQ   ++ I GLE+V +++PGY +EYDYI+P+ L  TLETK ISGL+L
Sbjct: 328 YPNGISCTMPPEIQEAMLKNIIGLEEVKMLQPGYGVEYDYIDPRGLKRTLETKTISGLYL 387

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG+VAGIN+         +   R+D YIG++IDDL +KGV EPYR
Sbjct: 388 AGQINGTTGYEEAAAQGIVAGINAGLGFQNKKPLILDRSDGYIGILIDDLITKGVEEPYR 447

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSR+E+RIS+R DNAD RLTP G +LGC+  +R   F +  + Y      LK   L S
Sbjct: 448 MFTSRSEFRISVRADNADLRLTPKGHELGCVSAQRWDHFTEENKLYQESLDFLKDYKLPS 507

Query: 486 KNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSIC--PDARKFSSLVIERLQIESS 541
           +  +     +  + D   ++A++ L Y + S+ +L  +            + +++ I   
Sbjct: 508 QEWAKLVPRLKIRTDSSYKSAFDLLRYENMSLDDLIPVLHNKSLEALPRKIKQKIDIHGD 567

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y GR+  + +  K +E  ++P +FDY+S+ +LS+E +  L+  KP  + QA +I+G+
Sbjct: 568 YQGYLGRENAQIRAFKSDENLVLPTNFDYTSMSSLSSEARALLNESKPETIGQARRIQGI 627

Query: 602 TPAALNLLLIYIKKNT 617
           TPAA+  L    K+  
Sbjct: 628 TPAAIFDLYRLAKRQQ 643


>gi|294660579|ref|NP_853425.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Mycoplasma gallisepticum str. R(low)]
 gi|298286832|sp|Q7NAK6|MNMG_MYCGA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|284812242|gb|AAP56993.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930922|gb|ADC30861.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. R(high)]
          Length = 611

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 233/611 (38%), Positives = 346/611 (56%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  +        + C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKIVRF  +  HQIFLEPE L  D VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIVRFSNKPRHQIFLEPESLELDTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K I  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLIKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVNKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I + +   + + +++ N L   LK   +    
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKEQIDLYNQNLEKKNKLIEFLKDKKVG--- 481

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 482 -MYTLLKAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IPKD  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRIVNSLKNLESIKIPKDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|218297060|ref|ZP_03497737.1| glucose inhibited division protein A [Thermus aquaticus Y51MC23]
 gi|218242615|gb|EED09152.1| glucose inhibited division protein A [Thermus aquaticus Y51MC23]
          Length = 596

 Score =  611 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 228/589 (38%), Positives = 325/589 (55%), Gaps = 20/589 (3%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KG
Sbjct: 26  VRVALVTVNPERIGMMPCNPAVGGPGKSQLVAELVALGGLMGRAADAAAIHTRVLNRSKG 85

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS 148
           PAV+  R Q DR+LY L  Q  +  +  + V++GEVA    E   +  +   D   I   
Sbjct: 86  PAVQSLRVQVDRDLYALKAQEILAERP-IAVVRGEVASLWVEGGRLLGVRTVDGRGIPAR 144

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
            VV+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   +
Sbjct: 145 AVVVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLRAVGHTLRRFKTGTPPRIRADS 204

Query: 209 IIWDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           + + +         + P SF         ++    TRT   THR+I+EN+  S +Y+GDI
Sbjct: 205 VDFSELSLVPP--EVPPGSFTGKPGPYADRLPTWQTRTTGRTHRLILENLHLSPLYAGDI 262

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           +  GPRYCPSIEDK+VRF ++  H +F+EP+GL T  VY  G S++LP E+Q + +R++P
Sbjct: 263 EGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLATSEVYLQGFSSSLPPELQEEMVRSLP 322

Query: 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           G  +  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+
Sbjct: 323 GFSRAVIQRYAYAVEYDSLDPTELTRGLQSRLLPGLFSAGQVNGTSGYEEAAAQGLLAGL 382

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+AR +  L  +   R   YIGVM+DDL  +G  EPYRM TSR E R+  R DNAD RL 
Sbjct: 383 NAARYALGLPEVHLGRETGYIGVMVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLV 442

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
           P+ +  G       +R              L++L +              DG   +  ++
Sbjct: 443 PLAVAWGLRPREDLERVRAKYARVEAELRRLEALRV--------------DGV--SGLQW 486

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ + + L    P     S    E+++I + YA Y  RQ    ++++  E   +P+ 
Sbjct: 487 LRRPENTYEALLERFPSPTPLSPEEREQVEIRAKYAGYIERQEKLREKMRDLEALRLPEG 546

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
            DY  +P LS E  EKLS  +P  L +A+++ G+  + L  LL+++++ 
Sbjct: 547 LDYPRVPGLSREAVEKLSRFRPRTLAEAARVPGVRDSDLTALLVHLRRE 595


>gi|213579759|ref|ZP_03361585.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 473

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 209/467 (44%), Positives = 293/467 (62%), Gaps = 5/467 (1%)

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           FL G IHIG      GR GD PS  L     +      RLKTGTP R+D +TI +    +
Sbjct: 2   FLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQ 61

Query: 217 QFADERLIPFSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           Q  D  +  FSFM +   + Q + C IT TN +TH +I  N+  S +Y+G I+  GPRYC
Sbjct: 62  QHGDNPMPVFSFMGNAFQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYC 121

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+
Sbjct: 122 PSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIV 181

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S  
Sbjct: 182 RPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSAD 241

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
            +    +R+ +Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG 
Sbjct: 242 KEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGL 301

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPD 512
           + + R  RF + ++     R  LKS  +T    S+  ++        +  +  + L  P+
Sbjct: 302 VDDERWARFNEKLENIERERQRLKSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPE 361

Query: 513 FSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
            +   L S+   A         E+++I+  Y  Y  RQ  E ++    E  L+P   DY 
Sbjct: 362 MTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYR 421

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK  +
Sbjct: 422 QVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM 468


>gi|148982566|ref|ZP_01816806.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrionales bacterium SWAT-3]
 gi|145960411|gb|EDK25802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrionales bacterium SWAT-3]
          Length = 450

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 227/450 (50%), Positives = 293/450 (65%), Gaps = 1/450 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH   T+G MSCNPAIGG+GKGHLV+E+DA+ GLM +  D AGIQFR LN  KGPAVR
Sbjct: 1   LLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAMGGLMAQAIDHAGIQFRTLNASKGPAVR 60

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R QADR LY+  ++  + +  NL + Q  V     E++ +  +V Q     R   VVL
Sbjct: 61  ATRAQADRALYKAFVRNVLENTPNLTLFQQSVDDLIVEQDQVVGVVTQMGLKFRADAVVL 120

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
           T GTFL G IHIG      GR GD PS +L +      F   RLKTGTP R+D +++ + 
Sbjct: 121 TVGTFLGGKIHIGMESSSGGRAGDPPSIALADRLRDLPFRVDRLKTGTPPRIDARSVDFS 180

Query: 213 KTEKQFADERLIPFSFMTDKIT-NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
           + E Q  D     FSFM  +    RQI C IT TN  TH +I  N+  S +Y+G I+  G
Sbjct: 181 ELEVQHGDNPTPVFSFMGSRAQQPRQIPCYITHTNENTHDVIRANLDRSPMYAGVIEGIG 240

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK++RF ++N HQIF+EPEGL T  +YPNGIST+LP ++Q Q +R++ G E 
Sbjct: 241 PRYCPSIEDKVMRFADKNSHQIFIEPEGLTTHELYPNGISTSLPFDVQVQIVRSMKGFEN 300

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
            +I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQGL+AG+N++ 
Sbjct: 301 AHIVRPGYAIEYDFFDPRDLKLTYETKFIKGLFFAGQINGTTGYEEAAAQGLMAGLNASL 360

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +   +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DNAD RLT    
Sbjct: 361 FTQGKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADIRLTEKSR 420

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           +LG + + R  RF + +      R  LK  
Sbjct: 421 ELGLVDDARWARFNEKMDNMEKERQRLKET 450


>gi|7109686|gb|AAF36757.1| glucose inhibited division protein A [Mycoplasma gallisepticum]
 gi|28212475|gb|AAO37614.1| glucose inhibited division protein A [Mycoplasma gallisepticum]
          Length = 611

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 230/611 (37%), Positives = 346/611 (56%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  +        + C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKIVRF  +  HQIFLEPE L    VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIVRFPNKPRHQIFLEPESLELGTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K +  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLVKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVTKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I +++   + + +++ N L   LK   +    
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKKQIDLYNQNLEKKNKLIEFLKDKKVG--- 481

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 482 -MYTLLRAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IP+D  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRLVNSLKNLESIKIPQDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|284931678|gb|ADC31616.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (Glucose-inhibited division protein A) [Mycoplasma
           gallisepticum str. F]
          Length = 611

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 230/611 (37%), Positives = 345/611 (56%), Gaps = 6/611 (0%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA + +KL     L       + +  CNP++GG  KG + REIDAL G+
Sbjct: 5   IVVGAGHAGLEAAFILSKLNNKVYLCVLDRKYVANCPCNPSVGGPAKGIVTREIDALGGI 64

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               AD+  +Q ++LN  KGP V+  R Q D+  Y+     +I + EN+++++GEV    
Sbjct: 65  QALAADSTALQRKILNSSKGPGVQCLRFQIDKVYYKKWFLEQIDNNENIELVEGEVTEVI 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
              +  + +++     +    V++TTGT+L+ +   GK     G  G   SN+L   F  
Sbjct: 125 KNGDTATGVMIDGVKKLEAGAVIITTGTYLKSLTFSGKDVKNEGPEGFKNSNNLSEWFKV 184

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ-IECGITRTNL 247
             F+  RLKTGTP R+   +I +   + +  +   + FS  +        + C +  T  
Sbjct: 185 NGFELIRLKTGTPPRIKKDSIDYSNLQIEPGNGTELYFSHWSKNKYIDYELPCYLIHTTE 244

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E H+II +N+  SA+YSG+I   GPRYCPSIEDKI+RF  +  HQIFLEPE L  D VY 
Sbjct: 245 EIHKIINDNLHLSAMYSGNITGVGPRYCPSIEDKIIRFSNKPRHQIFLEPESLELDTVYL 304

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST+L   +Q + IR +PGL+K  +I+ GYAIEYD INP +L+P+LE+K +  LF AG
Sbjct: 305 GGFSTSLDISVQDKIIRLLPGLKKAEVIKYGYAIEYDAINPIQLYPSLESKLVKNLFFAG 364

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGT+GYEEAA QGL+AGIN+ +K    + +  SR ++YIGVMIDD+ +KGV +PYR+ 
Sbjct: 365 QINGTSGYEEAAGQGLIAGINANQKIKNKEPLILSRDEAYIGVMIDDIVTKGVTDPYRLL 424

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DN  +RL   G ++G I + +   + + ++  N L   LK   +    
Sbjct: 425 TSRAEYRLLLRNDNVLDRLIQKGYEIGTISKEQIDLYNQNLERKNKLIEFLKDKKVG--- 481

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
              T +    +    + YEFL  P+  +  L  +   D   +   +++ ++I   Y  Y 
Sbjct: 482 -MYTLLRAHTNNTNFSLYEFLKRPEIKLIELLKLIEFDYSNYDLELLKNIEITVKYEGYI 540

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            ++      +K  E   IP+D  Y  +  LS E  +KL+ +KP NL QA +I G+  A +
Sbjct: 541 KKESRIVNSLKNLESIKIPQDLIYDKVQNLSIEAIDKLNKIKPLNLAQAQRISGINLADI 600

Query: 607 NLLLIYIKKNT 617
             L  ++++N 
Sbjct: 601 ISLKTHLEQNA 611


>gi|332187044|ref|ZP_08388785.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas sp. S17]
 gi|332013054|gb|EGI55118.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas sp. S17]
          Length = 572

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/573 (44%), Positives = 360/573 (62%), Gaps = 5/573 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGH+VRE+DA DGL+GR AD   I +R+LN  KG AV+GPR QADR  Y
Sbjct: 1   MSCNPAIGGLGKGHIVREVDAFDGLIGRAADEGAIHYRMLNRSKGTAVQGPRVQADRRRY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
             A+Q  + +Q  L +++GE      + + ++ + + D + +    VVL TGTFL G + 
Sbjct: 61  AGAIQAILAAQPKLTIVEGEAEALVLDGDRVAGVQLADGTTLAARAVVLATGTFLGGRLF 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
            G+ +   GR+G+  +  +            R+KTGTP RLDG+TI W K ++Q +D   
Sbjct: 121 RGEERHLGGRIGERAATRMAEQLRALGLPMARMKTGTPPRLDGRTIDWAKLDEQPSDSDP 180

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
              S MT      QI C ITRT  ETH II      S +++G I++ GPRYCPSIEDKI 
Sbjct: 181 WTMSPMTAARPLPQIACAITRTTEETHAIIAAAFHRSPLFTGAIEANGPRYCPSIEDKIK 240

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF +R+ HQIFLEPEGL+  +VYPNG+ST+LP ++Q   I ++PGLE+  I  PGYA+EY
Sbjct: 241 RFADRDSHQIFLEPEGLDDPLVYPNGLSTSLPTDVQEAMIASMPGLERAVITLPGYAVEY 300

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           D+I+P+ L   L    ++G+F AGQINGTTGYEEAA QGL+AG+N+A  +     +   R
Sbjct: 301 DHIDPRALDARLALGALAGVFCAGQINGTTGYEEAAGQGLIAGLNAAAHACDWAPVILDR 360

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             SY+GVMIDDL  +GV EPYRM T+RAEYR+SLR DNA++RL  I    GC+   R   
Sbjct: 361 ASSYLGVMIDDLVLQGVTEPYRMLTARAEYRLSLRADNAESRLGGIAEAAGCLSPERLAH 420

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
             + +++   LR  L + V T+ +L+ +  +  QDG  RTAYE+L +   +   L  + P
Sbjct: 421 RQRRLEQRTVLRDRL-ATVRTASDLARSGAAIAQDGARRTAYEWLRFDGVT---LAHVVP 476

Query: 524 DARK-FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
           DA       V+     ++ YA Y  RQ  E   ++ +E+ L+P   DY+++P LS E+ +
Sbjct: 477 DAADGLDPAVVAETLEDARYAPYVERQAEEVARLRADEQILLPISLDYAAIPGLSQEMID 536

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +LS+ +P  L  AS+I G+TPAAL+ +L++ +K
Sbjct: 537 RLSLARPATLAAASRIRGITPAALSAVLLHARK 569


>gi|121591763|ref|ZP_01678970.1| glucose-inhibited division protein A [Vibrio cholerae 2740-80]
 gi|121546375|gb|EAX56630.1| glucose-inhibited division protein A [Vibrio cholerae 2740-80]
          Length = 498

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 215/495 (43%), Positives = 293/495 (59%), Gaps = 5/495 (1%)

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + Q  V
Sbjct: 1   MGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLFQQAV 60

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E + I  +V Q         VVLT GTFL G IHIG      GR GD PS +L +
Sbjct: 61  DDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSIALAH 120

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGIT 243
              +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI C IT
Sbjct: 121 RLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIPCYIT 180

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL T 
Sbjct: 181 HTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGLTTT 240

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GL
Sbjct: 241 ELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKYIHGL 300

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EP
Sbjct: 301 FFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEP 360

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT    +LG + + R  RF + I      R  L+   +
Sbjct: 361 YRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKIDNMAKERQRLQETWM 420

Query: 484 TSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIE 539
              ++    ++        +  +  + L  P+ + + L ++   A     +   E+++I+
Sbjct: 421 NPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQVEIQ 480

Query: 540 SSYAAYTGRQMIEAK 554
             Y  Y  RQ  E +
Sbjct: 481 VKYDGYIQRQQDEIE 495


>gi|302510603|ref|XP_003017253.1| hypothetical protein ARB_04131 [Arthroderma benhamiae CBS 112371]
 gi|291180824|gb|EFE36608.1| hypothetical protein ARB_04131 [Arthroderma benhamiae CBS 112371]
          Length = 605

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/579 (43%), Positives = 352/579 (60%), Gaps = 23/579 (3%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+ +   L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYKKYMLEELSNTPGL 60

Query: 118 DVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++G+VA     K            I  + ++   MI    V++TTGTFL G IHIG  
Sbjct: 61  SIVEGKVADIVISKENIPSLNGSQGEIVGVKLESGEMIPTQKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 VFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFS 180

Query: 228 FMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           ++ D +      Q+ C    TN  +H ++ EN+  S      +   GPRYCPS+E KI+R
Sbjct: 181 YLNDSVQIGDKGQLNCWAAHTNEASHAVVRENLNKSIHIRETVN--GPRYCPSLESKIIR 238

Query: 285 FGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           F ++  H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EY
Sbjct: 239 FKDKPRHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEY 298

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR
Sbjct: 299 DYVDPRSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQSKPPMTLSR 358

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            D +IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R ++
Sbjct: 359 ADGFIGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRQ 418

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F +  ++ ++L++LL++    S   S      + D   R+A+E LS+   S+ ++     
Sbjct: 419 FNETKEQMSYLQALLENTKYPSTVWSRKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIE 478

Query: 524 DAR-------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            A         FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  L
Sbjct: 479 SAPGTIHSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGL 538

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           S E ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 539 STEERQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 577


>gi|327490313|gb|EGF22100.1| glucose inhibited division protein A [Streptococcus sanguinis
           SK1058]
          Length = 495

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 221/466 (47%), Positives = 296/466 (63%), Gaps = 2/466 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              SYD+IVIG GHAG EA+  A+++G    L T     +  M CNP+IGG  KG +VRE
Sbjct: 29  FTESYDIIVIGAGHAGVEASLAASRMGCKVLLATINIEMLAFMPCNPSIGGSAKGIVVRE 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G M +  D + IQ ++LN  KGPAVR  R QAD+E+Y   M++ + +QENL + Q
Sbjct: 89  VDALGGEMAKNIDKSYIQMKMLNTGKGPAVRALRAQADKEVYSKEMRKTVENQENLTLRQ 148

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             +     E   +  +    +       V++TTGT LRG I IG LK  +G      +  
Sbjct: 149 TMINEILVEDGKVIGVKTATHQEYAAKAVIVTTGTALRGEIIIGDLKYSSGPNHSLAAIP 208

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIE 239
           L ++     F+ GR KTGTP R+   +I +D TE Q  DE+   FS+ +  +     Q+ 
Sbjct: 209 LADNLRDLGFEIGRFKTGTPPRVKASSINYDVTEIQPGDEKANHFSYTSRDEDYVKDQVP 268

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T TN E+H II  N+  + ++SG +K  GPRYCPSIEDKIVRF ++  HQ+FLEPEG
Sbjct: 269 CWLTYTNAESHEIIQNNLHRAPMFSGIVKGVGPRYCPSIEDKIVRFADKERHQLFLEPEG 328

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            +T+ VY  G+ST+LPE++Q   + +I GLE   ++R GYAIEYD I P +L  TLETKK
Sbjct: 329 RDTEEVYVQGLSTSLPEDVQKDLVHSIKGLENAEMMRTGYAIEYDMIMPHQLRATLETKK 388

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           ISGLF AGQ NGT+GYEEAA QG++AGIN+A K      +   R+D YIGVMIDDL +KG
Sbjct: 389 ISGLFTAGQTNGTSGYEEAAGQGIIAGINAALKIQGKPELILKRSDGYIGVMIDDLVTKG 448

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            +EPYR+ TSRAEYR+ LR DNAD RLT +G ++G + + R  RF 
Sbjct: 449 TVEPYRLLTSRAEYRLILRHDNADMRLTEMGREIGLVDDERWARFE 494


>gi|240276892|gb|EER40403.1| mitochondrial translation optimization protein [Ajellomyces
           capsulatus H143]
          Length = 659

 Score =  606 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/638 (41%), Positives = 366/638 (57%), Gaps = 65/638 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDV+VIGGGHAG EA A AA+LGA TAL+T   S IG  SCNP+IGG+GKG ++REID
Sbjct: 36  QAYDVVVIGGGHAGSEACAAAARLGARTALVTPSRSNIGVCSCNPSIGGIGKGTMIREID 95

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDG+ G+VAD AGIQFR+LN  KG AV GPR Q DR LYR  M  E+ +   L +++G+
Sbjct: 96  ALDGVAGKVADKAGIQFRILNRSKGEAVWGPRAQIDRVLYRQNMLDELSNTPGLSIVEGK 155

Query: 124 VAGFNTEKN--------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           V      K+         I  + ++   +I    V++TTGTFL G IHIG    P+GR+G
Sbjct: 156 VGDIIVSKDNLPAGSQGKIVGVRLESGEVIPTGRVIITTGTFLGGEIHIGLDVFPSGRLG 215

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT- 234
           ++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D   IPFS++ +++  
Sbjct: 216 EAATFGLSRSLREAGFQLGRLKTGTPPRLDKKTIDFSNLEVQPGDSPPIPFSYLNNRVDV 275

Query: 235 --NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
               Q+ C                                           RF ++  H 
Sbjct: 276 DDEDQLPC------------------------------------------CRFKDKQRHM 293

Query: 293 IFLEPEGLNTDVV-YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           I+LEPEG   D V YPNGIS  +P + Q   +RT+ GLE V +++ GY +EYDY++P+ L
Sbjct: 294 IWLEPEGFEPDEVIYPNGISMTIPADAQLAVLRTVAGLENVRMLQAGYGVEYDYVDPRSL 353

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PTLETK ISGL+LAGQINGTTGYEEAA QG++AGIN+   S        SR+D +IG+M
Sbjct: 354 RPTLETKLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASKSKPPFTLSRSDGFIGIM 413

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL +KGV EPYRMFTSR+EYRI+ R DNAD RLT  G ++G +G++R + F++   + 
Sbjct: 414 VDDLITKGVSEPYRMFTSRSEYRIATRSDNADLRLTARGREVGVVGDKRWEHFSQVQAQI 473

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-------- 523
             L++LL++    S   S        D   R+A++ L   D SI ++             
Sbjct: 474 TELQTLLENTKFPSALWSRKGFGVHYDNNVRSAFDLLRLRDISIDDIIPHIEPPSSSRSG 533

Query: 524 ---DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
               A  F+S +  R+ +E  YA Y        +  + +E  L+P D DYS +  LS E 
Sbjct: 534 KAYTASSFASEIKHRVAVEGRYAPYVKMHADRTRNFEKDEALLLPPDIDYSLITGLSAEE 593

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +  L  ++P ++  A +IEGMTP A   LL+Y+++ T 
Sbjct: 594 RAALENVRPESIGMARRIEGMTPVAALKLLVYVRRTTA 631


>gi|258569531|ref|XP_002543569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Uncinocarpus reesii 1704]
 gi|237903839|gb|EEP78240.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Uncinocarpus reesii 1704]
          Length = 680

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 262/625 (41%), Positives = 371/625 (59%), Gaps = 22/625 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+VIGGGHAG EA A AA+ GA TAL+T   S IG  SCNP+ GG+GKG ++RE+D
Sbjct: 35  RPFDVVVIGGGHAGSEACAAAARSGARTALVTPSRSNIGVCSCNPSFGGIGKGTMIREVD 94

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-TQADRELYRLA-MQREILSQENLDVIQ 121
           ALDG+ GR+ D AGIQFRVLN  KG  + G + ++  R+LY+   + R +   + L +++
Sbjct: 95  ALDGVAGRIVDKAGIQFRVLNRSKGSRLSGAQGSRLIRDLYKQYKLGRVVRPIQGLSIVE 154

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G+VA     +  + +   +     R    V       RG         P+GRMG++ +  
Sbjct: 155 GKVADIVLSREDLENTPGRKRQNCRRQVRV-------RGSHSNWACVFPSGRMGEAATFG 207

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQI 238
           L  S     F  GRLKTGTP RLD KTI +   E Q  D    PFSF+ D +      Q+
Sbjct: 208 LSKSLRDAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPPPFSFLNDTVAVGDEDQL 267

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C  T TN + H I+  N+  S      +K  GPRYCPS+E KI+RF ++  H I+LEPE
Sbjct: 268 ACWSTYTNEKAHAIVTANLDKSVHIRETVK--GPRYCPSLESKIIRFKDKLRHMIWLEPE 325

Query: 299 GLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           G    DV+YPNGIS  +P + Q++ ++TI GLE V +++PGY +EYDY++P+ L PTLET
Sbjct: 326 GFAPNDVIYPNGISMTIPADAQYEMLKTIQGLEHVKMLQPGYGVEYDYVDPRSLKPTLET 385

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K ISGL+LAGQINGTTGYEEAA QG++AGIN+   S     +  SR+D +IG+M+DDL +
Sbjct: 386 KLISGLYLAGQINGTTGYEEAAGQGILAGINAGLASQSKAPLTLSRSDGFIGIMVDDLIT 445

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KGV EPYRMFT+R+EYRIS R DNAD RLT +G   G I ++R K F++  ++   L++L
Sbjct: 446 KGVTEPYRMFTTRSEYRISTRADNADLRLTEMGRAAGVITDKRWKHFSETKEQLVELQTL 505

Query: 478 LKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA-------RKFSS 530
           L++    S   S        D   R+A++ L   + +I  +                F  
Sbjct: 506 LENTKYPSTIWSRKGFRVHTDSSLRSAFDLLCLNNANIDTIIQHLTSPTGLPYTTDSFDP 565

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
            +  R+ IE +Y+ Y  RQ   A+    +E  L+P D DYS +  LS E +  L  ++P 
Sbjct: 566 KIKARIAIEGTYSPYVKRQANSARIFARDEALLLPPDLDYSKIHGLSTEERHALERVRPE 625

Query: 591 NLLQASKIEGMTPAALNLLLIYIKK 615
           ++  A +IEG+TP+    LL+++++
Sbjct: 626 SVGMARRIEGVTPSGALKLLLHVRR 650


>gi|104295013|gb|ABF72028.1| glucose-inhibited division A family protein [Musa acuminata]
          Length = 638

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 241/559 (43%), Positives = 336/559 (60%), Gaps = 4/559 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  AA+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 76  IEEQYDVIVVGGGHAGCEAALAAARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 135

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  KGPAVR  R Q D+  Y L M++ + S  NL + +
Sbjct: 136 VDALGGEIGKIADRCYLQKRVLNRSKGPAVRALRAQTDKREYALEMKKVVESTTNLFIRE 195

Query: 122 GEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      + + +  +           +VVLTTGTF+ G I +G+  +PAGR G+S S+
Sbjct: 196 AMVTNILVGKNDTVEGVSTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASH 255

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  S  +  F+T RLKTGTPAR+D +++ +   E Q  DE +  FSF  D  +   Q+ 
Sbjct: 256 GLTESLQQLGFETDRLKTGTPARVDYRSVNFSGLEPQHGDEEVNWFSFDPDYHVEREQMC 315

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +TRT  +TH++I +N+  +  Y G +++ GPRYCPSIEDKIVRF +++ HQIFLEPEG
Sbjct: 316 CYLTRTTKDTHQLIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKDSHQIFLEPEG 375

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                +Y  G ST LPE +Q   +RT+PGLE   ++RP YA+EYDY+   +   +L TKK
Sbjct: 376 RTVPDLYVQGFSTGLPERLQLTLLRTLPGLENCLMLRPAYAVEYDYLPAHQCSRSLMTKK 435

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           + GLF +GQINGTTGYEEAAAQGL++GIN+AR S+    I   R  SYIG +IDDL +K 
Sbjct: 436 LEGLFFSGQINGTTGYEEAAAQGLISGINAARHSDGKSIIILERESSYIGTLIDDLVTKD 495

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           + EPYRM TSR+E+R+ LR DNAD+RLTP+G  +G I ERR   +          +  LK
Sbjct: 496 LREPYRMLTSRSEHRLLLRADNADSRLTPLGWDIGLIDERRWNLYQLKQARILEEKERLK 555

Query: 480 SLVLTSKN--LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           S+ ++  +     + +S +    + +    L  P    + L          S +  E ++
Sbjct: 556 SVRISGGDFVAEVSHLSGQPVKDSSSLESILKKPHVEYKVLDKHGYGNELLSRIEKECVE 615

Query: 538 IESSYAAYTGRQMIEAKEI 556
           I+  YA +  RQ  + +++
Sbjct: 616 IDIKYAGFIARQRSQLQQV 634


>gi|46199909|ref|YP_005576.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus thermophilus HB27]
 gi|81170586|sp|Q72H88|MNMG_THET2 RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|46197536|gb|AAS81949.1| glucose inhibited division protein A [Thermus thermophilus HB27]
          Length = 597

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 331/590 (56%), Gaps = 20/590 (3%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADAA I  RVLN  KG
Sbjct: 27  VRVALVTVNPDRIGMMPCNPAVGGPGKSQLVAEVVALGGLMGRAADAAAIHTRVLNRSKG 86

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS 148
           PAV+  R Q DR+LY L  Q  +  +  ++V++GEVA    E   +  +   D   +   
Sbjct: 87  PAVQSLRVQVDRDLYALKAQEILAERP-VEVLRGEVAALWVEGGRLLGVRTVDGRTLPAK 145

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
            VV+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   +
Sbjct: 146 AVVVAGGTFLSGVVWYGRKSRPAGRQGEPPARFLSQSLKAVGHTLRRFKTGTPPRIRADS 205

Query: 209 IIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           + + + E       + P SF  +   +  ++    TRT   THR+I+EN+  S +Y+GDI
Sbjct: 206 VDFGRLEVVPP--EVPPGSFTGNPGPHAARLPTWQTRTTERTHRLILENLHLSPLYAGDI 263

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           +  GPRYCPSIEDK+VRF ++  H +F+EP+GL+T  VY  G S++LP E+Q + +R++P
Sbjct: 264 QGIGPRYCPSIEDKVVRFADKESHLLFVEPDGLSTTEVYLQGFSSSLPPELQEEMVRSLP 323

Query: 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           G E+  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+
Sbjct: 324 GFERAVIQRYAYAVEYDSLDPTELTRGLQSRFLPGLFSAGQVNGTSGYEEAAAQGLLAGL 383

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+AR +  L  +   R   YIGV++DDL  +G  EPYRM TSR E R+  R DNAD RLT
Sbjct: 384 NAARFALGLPEVHLPRESGYIGVLVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLT 443

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
           P+ +  G       +R     +        L++L +                +  +  ++
Sbjct: 444 PLAVAWGLRPREDLERVEAKYRRVAAELRRLEALRV----------------EGVSGLQW 487

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ + + L    P     S     ++++ + YA Y  RQ    ++++  E   IP+ 
Sbjct: 488 LRRPENTYRALAERFPPPEPLSPEEAYQVEVRAKYAGYIERQERLREKMRDLEAFRIPEG 547

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            D+  +P LS E  EKLS  +P +L +A++I G+  + L  L +++++  
Sbjct: 548 MDFPKVPGLSREAAEKLSRHRPKSLAEAARIPGVRDSDLTALAVHLRRGA 597


>gi|302653989|ref|XP_003018808.1| hypothetical protein TRV_07168 [Trichophyton verrucosum HKI 0517]
 gi|291182486|gb|EFE38163.1| hypothetical protein TRV_07168 [Trichophyton verrucosum HKI 0517]
          Length = 605

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/579 (43%), Positives = 351/579 (60%), Gaps = 23/579 (3%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LY+  M  E+     L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRSLYKKYMLEELSKTPGL 60

Query: 118 DVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           ++++G+VA     K            I  + ++   MI    V++TTGTFL G IHIG  
Sbjct: 61  NIVEGKVADIVISKENMTSLNGSQGEIVGVRLESGEMIPTQKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 VFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEVQPGDSPPSPFS 180

Query: 228 FMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           ++ D +      Q+ C    TN  +H ++ +N+  S      +   GPRYCPS+E KI+R
Sbjct: 181 YLNDSVQIGDKGQLNCWAAHTNEASHAVVRDNLNKSIHIRETVN--GPRYCPSLESKIIR 238

Query: 285 FGERNGHQIFLEPEGLN-TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           F ++  H I+LEPEGL   DV+YPNGIS  +P + Q + +RT+ GLE V +++PGY +EY
Sbjct: 239 FKDKPRHMIWLEPEGLAPNDVIYPNGISMTIPADAQEKMLRTVRGLENVTMLQPGYGVEY 298

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DY++P+ L PTLETK I GL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR
Sbjct: 299 DYVDPRSLRPTLETKLIGGLYLAGQINGTTGYEEAAAQGIIAGINAGLASQLKPPMTLSR 358

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
            D +IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R ++
Sbjct: 359 ADGFIGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADLRLTAKGRAAGVVSDKRWRQ 418

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F +  ++ ++L++LL++    S   S      + D   R+A+E LS+   S+ ++     
Sbjct: 419 FNETKEQMSYLQALLENTKYPSTVWSRKGFPVRTDSSVRSAFELLSHNGVSLDDVIPHIE 478

Query: 524 DAR-------KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
            A         FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  L
Sbjct: 479 SAPGTIHSLSSFSPEIKSRMAIEGRYAPYTKRQEATALLFERDEGMLLPPDIDYSTMLGL 538

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           S E ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 539 STEERQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 577


>gi|296533443|ref|ZP_06896026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseomonas cervicalis ATCC 49957]
 gi|296266223|gb|EFH12265.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Roseomonas cervicalis ATCC 49957]
          Length = 623

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 304/623 (48%), Positives = 409/623 (65%), Gaps = 2/623 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   S+DV+VIGGGHAG EAAA AA+ GA T L+TH+  T+G MSCNPAIGG+GKGHLVR
Sbjct: 1   MRENSFDVVVIGGGHAGTEAAAAAARCGARTLLLTHRIETLGEMSCNPAIGGVGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DALDGL+GR AD AGI F++LN  KGPAVRGPR QADR LYR A+Q  + +Q  L + 
Sbjct: 61  EVDALDGLIGRAADLAGIHFKLLNRSKGPAVRGPRAQADRALYRRAIQSLLAAQPGLTLR 120

Query: 121 QGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                G   +    I +++ +  + I C   ++TTGTFLRG IHIG+ + PAGR+GD+PS
Sbjct: 121 AEAAGGLERDASGRIVAVLTESGTRIACGAAIITTGTFLRGEIHIGETRQPAGRVGDAPS 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +         RLKTGTP RLDG+TI W   E Q  DE   P S+MT++I N Q++
Sbjct: 181 IGLALALEALGLPMRRLKTGTPPRLDGRTIDWAGLEMQPGDEAPEPLSWMTERIANPQVQ 240

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           CGIT T  E H +I  N+  + I+SG I+  GPRYCPSIEDKI RF  R  HQIFLEPEG
Sbjct: 241 CGITATTPEGHALIRANLHRAPIHSGQIQGAGPRYCPSIEDKITRFAGRERHQIFLEPEG 300

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L+   +YPNGIST+LPE++Q  FI TIPGLE+  I+R GYAIEYD+++P+ L PTLE + 
Sbjct: 301 LDDPTIYPNGISTSLPEDVQRGFIATIPGLERAEILRLGYAIEYDHVDPRALRPTLELRA 360

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI-CFSRTDSYIGVMIDDLTSK 418
           + GLFLAGQINGTTGYEEAAAQGL+AG+N+A  +         +RT++Y+GVM+DDL  +
Sbjct: 361 VPGLFLAGQINGTTGYEEAAAQGLLAGLNAAALAGGEAEGRVLARTEAYLGVMVDDLVLQ 420

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRM T+R+E+R++LR DNA  RLT  G+  G +G  R  RF  +        +  
Sbjct: 421 GVTEPYRMLTARSEHRLALRADNAGLRLTEKGIAWGVVGPERAARFRAFAAGVADALARA 480

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++   T   L S  I   QDG+ R+  E L+ PD   + +    P      + V  +L+ 
Sbjct: 481 RAEGGTPAALQSAGIPINQDGRWRSLLEVLALPDVPGEAVAQAFPWLNDLPAGVRAQLEA 540

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           E+ YA Y  RQ  E + ++ +E++ IP+  D+ ++P LSNE+K++L   +P  L  A ++
Sbjct: 541 EALYAPYLERQAAELRLLERDERQAIPRGLDFGAIPGLSNEMKQRLETARPETLGGAGRV 600

Query: 599 EGMTPAALNLLLIYIKKNTVKLN 621
            G+TPAAL  L +++++   +  
Sbjct: 601 PGITPAALAALAVHLRRRQERST 623


>gi|15639038|ref|NP_218484.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025278|ref|YP_001933050.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum SS14]
 gi|6016130|sp|O83084|MNMG_TREPA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|238689312|sp|B2S1Z2|MNMG_TREPS RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3322299|gb|AAC65038.1| glucose inhibited division protein A (gidA) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189017853|gb|ACD70471.1| glucose inhibited division protein A [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059460|gb|ADD72195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 630

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 254/626 (40%), Positives = 371/626 (59%), Gaps = 17/626 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAG EAA  AA++G  T LIT    +IG +SCNP+IGG+ KG++VREIDA
Sbjct: 7   DYDVIVVGGGHAGAEAALAAARMGEHTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG+ ADA  IQ+R+LN  +GPAV+ PR QAD+ LY   ++  +   ++L + Q  V
Sbjct: 67  LGGEMGKFADACMIQYRLLNKSRGPAVQAPRIQADKFLYAQKVKYTLECTQHLHLYQDTV 126

Query: 125 AGFNTEKNIISS---------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                     +          +V      I    VVLTTGTF+ G ++IG+ + P GR+G
Sbjct: 127 VDVVCSNTTDAGYVAYGAAHAVVTARGRRISARAVVLTTGTFMEGRVYIGEYEAPEGRLG 186

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  +  L  +  K  F  GRLKTGTPAR+  K++     EKQ AD  + PFSF   +I  
Sbjct: 187 EHAAEGLGAALRKKGFQMGRLKTGTPARVLRKSVDLSVMEKQEADAIMRPFSFAHVEINR 246

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
              +C I  TN  TH++I EN   S  +SG IK+ G RYCPSIEDK+ +F +R  HQ+++
Sbjct: 247 PHADCYINYTNERTHQLIRENFHRSPFFSGRIKAVGTRYCPSIEDKVRKFPDRIRHQLYI 306

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEGL+T+ +Y NG+S+ LPE+IQ + IRTIPG+E+  I RP YA++Y  + P +L   L
Sbjct: 307 EPEGLDTEELYINGLSSCLPEDIQDEMIRTIPGMERAVITRPAYAVDYAVLFPVQLGIDL 366

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN------KLDCICFSRTDSYIG 409
           +TK++SGLF AGQINGT+GYEEA  QG++AGIN+A  +       +       R ++YIG
Sbjct: 367 QTKRVSGLFSAGQINGTSGYEEAGGQGIIAGINAALYARSTKTKEEYHPFVLKRDEAYIG 426

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL ++G+ EPYRMFT+RAEYR+ LR D AD RLT     +G   +   +   K ++
Sbjct: 427 VMIDDLVTQGIDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQKKSAVETLQKKMR 486

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
             + +  LL++  ++  + ++        GK+  A   L  P   +  + S+     +F 
Sbjct: 487 TKHEILHLLQTNKVSLTHANAYVQLKPHIGKSFAAT--LRDPVIPLGLIASLNEQIAQFP 544

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
             V + + +E  Y  Y   Q     +++  E   IP  FDY+ +  LS E + +L  ++P
Sbjct: 545 LEVFQSVGVEIRYEHYIAAQDQRIAQVEKMEGIKIPAHFDYARISGLSVESRTRLEHVRP 604

Query: 590 FNLLQASKIEGMTPAALNLLLIYIKK 615
             + Q  ++ G+ P+ + LLL ++K+
Sbjct: 605 DTIGQVGRMRGIRPSDVMLLLAHLKR 630


>gi|28190319|gb|AAO33052.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 241/532 (45%), Positives = 334/532 (62%), Gaps = 5/532 (0%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G M R  D +GIQFR+LN +KGPAVR  R QADR++Y   ++  + +Q+ L +++
Sbjct: 1   IDALGGFMARAIDKSGIQFRILNSRKGPAVRSTRAQADRKIYSKTIKNFLQNQDKLSIVE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     E   +  +++ +       +VVLT GTFL G I+IG   +  GR+GD  S  
Sbjct: 61  GEVKDLIVENYSVKGVIIHNEIKFFSRSVVLTVGTFLGGKIYIGLDSVSGGRIGDHASID 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +   +   +  RLKTGTP RLD +TI + + E Q++D  L  FSFM   + +  Q+ C
Sbjct: 121 LASRLRELPVNVSRLKTGTPPRLDYRTINFKELECQYSDNPLPIFSFMGTILEHPKQVPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN  TH II +N+  SAIYSG +K  GPRYCPSIEDK++RF +++ HQIFLEPEGL
Sbjct: 181 HITYTNEITHSIIRKNLHSSAIYSGILKGIGPRYCPSIEDKVIRFSKKSQHQIFLEPEGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +YPNGIST+LPE +Q + I++I GLEK  IIRPGYA+EYDY++P+ L  TLE+K I
Sbjct: 241 SGIEIYPNGISTSLPENVQIKIIQSIKGLEKAKIIRPGYAVEYDYLDPRHLKLTLESKFI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGL+AG+N++  ++  D     R ++Y+GV+IDDL +KG 
Sbjct: 301 SGLFLAGQINGTTGYEEAAAQGLLAGLNASLHASDNDGWFPKRNEAYLGVLIDDLCNKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+RAEYR+ LR DNAD RLT IG KLG I E+R KR+ + +         LK+
Sbjct: 361 KEPYRMFTARAEYRLILREDNADLRLTEIGRKLGLIDEKRWKRYNQKLMNIKNELKRLKN 420

Query: 481 LVLTS--KNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERL 536
           L ++    N++  +     +     +A + L  P+ +  NL SI             +++
Sbjct: 421 LTISPISNNINQLNKILNVKLNIKSSAKDLLKRPEITYDNLMSINGFGPGIQDVEATQQI 480

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +I   Y  Y  RQ  E      +E  ++ K  +Y  +  LS+E+  KL+  K
Sbjct: 481 EICEKYQGYISRQKKEIDRNLKKENIMLFKIKNYHEIRGLSHEVISKLNYYK 532


>gi|297625197|ref|YP_003706631.1| glucose inhibited division protein A [Truepera radiovictrix DSM
           17093]
 gi|297166377|gb|ADI16088.1| glucose inhibited division protein A [Truepera radiovictrix DSM
           17093]
          Length = 606

 Score =  601 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 235/613 (38%), Positives = 331/613 (53%), Gaps = 23/613 (3%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+GGGHAG EAA  AA+LGA  AL       IG M CNPAIGG GK  LV E+ AL G+M
Sbjct: 2   VVGGGHAGIEAAHAAARLGARVALTLPNPDKIGLMPCNPAIGGPGKSQLVFEVHALGGVM 61

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
           GR+ADA  I  R LN  KGPAV+  R Q +R+ Y  A +  + +   +++++GE+A    
Sbjct: 62  GRLADATAIHARTLNASKGPAVQSLRVQNERDDYAAAARALVEATPGIEIVRGEIAELLV 121

Query: 130 ----EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                   +  + + D  ++R  +VVL TGTFL GV+  GK + PAGR G++P+  L  S
Sbjct: 122 TATGNAPQLRGVRLTDGRVLRAPSVVLCTGTFLAGVVWYGKQQRPAGRQGEAPARHLSRS 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTP R+   ++ +   E   AD+    FS  +           +T T
Sbjct: 182 LRATGHALLRFKTGTPPRIRADSVDFGVLEVVPADDPPGSFS-GSPGPRATSSPTWLTHT 240

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETH +I  N+ HSA+Y G+I+  GPRYCPSIEDK+VRF ++  H +F+EP+G  T  V
Sbjct: 241 TPETHALIQANLAHSAMYGGEIEGRGPRYCPSIEDKVVRFADKERHLLFVEPDGAGTSEV 300

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S+++P  +Q + IRT+PG E+  I R  YA+EYD ++P +L  TL +K++ GLF 
Sbjct: 301 YLQGFSSSMPPALQDEMIRTLPGFERAVIQRYAYAVEYDALDPTQLDTTLMSKRLPGLFS 360

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAG+N+AR +     +   R + YIGV++DDL   G+ EPYR
Sbjct: 361 AGQINGTSGYEEAAAQGLVAGVNAARFAAGQRPVSVRRDEGYIGVLLDDLVRWGIDEPYR 420

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR EYR+  R DNAD RL P+G   G   +   +   +           L+   +  
Sbjct: 421 MLTSRNEYRLLHRQDNADERLLPLGHAWGLRDDAALRALRRSEAAVAAELERLRRTRI-- 478

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS-ICPDARKFSSLVIERLQIESSYAA 544
                       DG    A   L  P      L   + P     S     +++I + YAA
Sbjct: 479 ------------DGVP--ADRVLCRPGMHYAALLERLGPPTPPLSPEEARKVEILTKYAA 524

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  R   E +     E   +    D+  + +LS E  E L   +P  L  A ++ G+  +
Sbjct: 525 YIERSRRELQARAAYETLDL-TRTDFRRVGSLSAEGLEVLLRERPATLGAAGRLRGVRDS 583

Query: 605 ALNLLLIYIKKNT 617
            L  LL++ ++ +
Sbjct: 584 DLTALLVHCRRRS 596


>gi|226357392|ref|YP_002787132.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus deserti VCD115]
 gi|259495845|sp|C1D0A9|MNMG_DEIDV RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|226319382|gb|ACO47378.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme (glucose-inhibited division protein A)
           [Deinococcus deserti VCD115]
          Length = 601

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 237/613 (38%), Positives = 345/613 (56%), Gaps = 19/613 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGGHAG EAA  AAK     AL+    +T+G M CNPA+GG GK  LV E+ AL
Sbjct: 4   WNVIVIGGGHAGLEAAWAAAKF-ERVALLIGNPATVGRMPCNPAVGGPGKSQLVFEVQAL 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  I     +D+++GE A
Sbjct: 63  GGLMGRLADETAIHTRVLNASKGPAVQSLRVQNERDAYAERAQDVIFGHAGIDIVRGEAA 122

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              ++      +V  D   +   +VV+  GTF+RGV   G+   P GR G+ PS  L   
Sbjct: 123 DLESDGRGGWLVVTTDGRRLAARSVVVAAGTFMRGVTWYGRHSRPEGRQGEPPSRFLSAP 182

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                    R KTGTP R+    + + +  +  AD +   F+               T T
Sbjct: 183 LASAGHVLKRYKTGTPPRVRADAVNFSELLEIPADPQPRGFTGRPGPRATES-PTWQTHT 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             ETHR+I  N+  S +Y+GDI+  GPRYCPSIEDK+VRF   + H +F+EP+G+ T  V
Sbjct: 242 TPETHRLIQANLHESPMYAGDIEGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVQTSEV 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y  G S++LP  +Q Q +RT+PG E+  I R  YA+EYD ++  EL   LE++ + G+F 
Sbjct: 302 YLQGFSSSLPPHLQDQLVRTLPGFEQAVIQRYAYAVEYDVVDSTELTLNLESRYLPGVFT 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGT+GYEEAAAQGLVAG+ +AR+S  L+     R   Y+GV++DDL  KG  EPYR
Sbjct: 362 AGQINGTSGYEEAAAQGLVAGMAAARRSLGLEEQVIGRETGYLGVLLDDLVFKGSDEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           M TSR E+R+ +R DNAD RLTP+G++LG + +    R              L+   +  
Sbjct: 422 MMTSRVEHRLLVRQDNADERLTPLGLRLGLVTDAEASRVEAKYSRVQAGLEALQRQRI-- 479

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
                         + +T   +L  P+F++ ++ ++  +    ++   E L+I   YA Y
Sbjct: 480 --------------QGQTGDSWLRRPEFALADVEALGIELPVLAAEEREALEIRVKYAGY 525

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             R   + +  +   +RL  +  D++ + ALSNE +EKL+  +P  + QA++I G+  A 
Sbjct: 526 IDRARRQLQS-EAHARRLSLEGVDFAGIAALSNEAREKLARHQPQTVDQAARISGVRHAD 584

Query: 606 LNLLLIYIKKNTV 618
           + +LL+++K+  V
Sbjct: 585 IGVLLVHLKQQRV 597


>gi|223996205|ref|XP_002287776.1| hypothetical protein THAPSDRAFT_268238 [Thalassiosira pseudonana
           CCMP1335]
 gi|220976892|gb|EED95219.1| hypothetical protein THAPSDRAFT_268238 [Thalassiosira pseudonana
           CCMP1335]
          Length = 769

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 291/667 (43%), Positives = 385/667 (57%), Gaps = 51/667 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++SYDVI++GGGHAG EAA  +A+ GA T L+T   ST+G +SCNP+IGG+GKGHLVREI
Sbjct: 92  SKSYDVIIVGGGHAGTEAATASARTGARTLLLTQNKSTLGELSCNPSIGGIGKGHLVREI 151

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS--------Q 114
           DAL G+MG VAD +GI FR+LN +KGPAVRGPR Q DR+LY+  MQ  +L+         
Sbjct: 152 DALQGVMGEVADGSGIHFRMLNRRKGPAVRGPRGQMDRDLYKKNMQDLLLNGVELGINGI 211

Query: 115 ENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           ENLDV++        ++         + D   I  +TVVLTTGTFLRGV+ IG  +   G
Sbjct: 212 ENLDVMEASAEDLLLDEGDAIETLAPLADRVEIESTTVVLTTGTFLRGVLMIGHERYSGG 271

Query: 173 RM------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
           R        + PS  L  +  +F F  GRLKTGTPARLDG+TI WD    Q ++   IPF
Sbjct: 272 RHLRDSEEVEPPSVGLALTLERFGFPLGRLKTGTPARLDGRTIDWDGCNIQPSERPAIPF 331

Query: 227 SFMTDKITNRQ--------IECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPS 277
           S +                I+C  T TN  THR++M+       Y   D K  GPRYCPS
Sbjct: 332 SHIRQSRGEEPPLAASGNLIDCYQTATNEATHRLVMDYAHLLPQYDGMDGKGNGPRYCPS 391

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           I  K+ RF ERN H  FLEPEGLNT +VYPNG+S   PEEIQ Q  R++ GLEKV I+RP
Sbjct: 392 IFKKVERFAERNSHNSFLEPEGLNTHIVYPNGMSGPYPEEIQLQIFRSMKGLEKVEIVRP 451

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GY +EYD++NP  L  TLETK I+GL+LAGQI GTTGYEEA AQG++AG N+ R +    
Sbjct: 452 GYDVEYDFVNPTALTHTLETKSIAGLYLAGQICGTTGYEEAGAQGVIAGANAGRAAGAAY 511

Query: 398 -------CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
                       R ++YIGV+IDDL +KG LEPYRMFTSRAEYRISLR DNAD RLT  G
Sbjct: 512 RGEKPPLPFVLGRDEAYIGVLIDDLVTKGTLEPYRMFTSRAEYRISLRADNADIRLTRKG 571

Query: 451 MKLGCIGE-RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDG---------- 499
            + G + +  R                 L++  L   + ++   +    G          
Sbjct: 572 AEHGLVTDPERLAALDMRENLIADNVERLRNFKLFVTDWANRGGNDLMGGAAATRQGRES 631

Query: 500 KTRTAYEFLSYPDFSIQNLFSI--CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
             ++A E L  P  +++++  I    +     S V + ++    Y +Y  RQ  + +  +
Sbjct: 632 HKKSAEEVLGMPHVTLEDVEKIMADYEMNPTPSSVYDTVEASVKYKSYVVRQEKDIESWR 691

Query: 558 FEEKRLIPKDFDY--SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             +   IP +  Y  S +P  S E  EKL+  KP    +AS+I G+TP +    L+Y+  
Sbjct: 692 KAQGARIPPNIIYEHSIMPTFSKEEIEKLNRFKPTTFAEASQISGLTPQS----LVYLYH 747

Query: 616 NTVKLNE 622
           + +KLN+
Sbjct: 748 HVMKLNK 754


>gi|103488331|ref|YP_617892.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingopyxis alaskensis RB2256]
 gi|122984730|sp|Q1GP63|MNMG_SPHAL RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|98978408|gb|ABF54559.1| glucose inhibited division protein A [Sphingopyxis alaskensis
           RB2256]
          Length = 619

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/587 (44%), Positives = 377/587 (64%), Gaps = 2/587 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L++   + IG+MSCNPAIGGLGKGHL+RE+DALDG M R ADAA I +R+LN  KG AV+
Sbjct: 34  LVSFDPTLIGTMSCNPAIGGLGKGHLMREVDALDGWMARAADAAAIHYRMLNASKGAAVQ 93

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF-NTEKNIISSIVMQDNSMIRCSTVV 151
           GPR QADR+LYR A+Q  + ++E + V+ GE A    +    I+ + + D + +    VV
Sbjct: 94  GPRIQADRKLYRAAIQTLLAAEEGITVVAGEAAALRLSNGGRIAGLDLADGTALTARAVV 153

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           L TGTFL G +  G+ ++  GR+G++ S+ L            RLKTGTP RLDG+TI W
Sbjct: 154 LATGTFLGGRLFRGEERMEGGRIGEAGSHRLAGQLRAAHLPMARLKTGTPPRLDGRTIDW 213

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
            + ++Q +D      S   +  T  QI C ITRTN E+HRII EN+  S +++G I + G
Sbjct: 214 ARLQEQPSDGGRWTCSTWNNARTVPQIFCAITRTNAESHRIIAENLHRSPLFTGAIGAAG 273

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDKI RF +R+GHQ+FLEPEGL+T +VYPNGIST+LP ++Q   +RTI GLE 
Sbjct: 274 PRYCPSIEDKIHRFADRDGHQVFLEPEGLDTHLVYPNGISTSLPADVQLAMLRTIEGLEA 333

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
           V ++ PGYA+EYD+I+P+ L  TL+ + + G++ AGQINGTTGYEEAAAQGLVAG N+A 
Sbjct: 334 VEMVVPGYAVEYDHIDPRALDRTLQVRAMPGVWCAGQINGTTGYEEAAAQGLVAGANAAL 393

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
                + +   R++SYIGVM+DDL  +GV EPYRM T+RAEYR+ LR DNA  RLTP G+
Sbjct: 394 AVQGREPLILDRSESYIGVMVDDLVLQGVTEPYRMLTARAEYRLRLRADNAATRLTPKGI 453

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
            LG +       FA+ + E     +LL++ V T+ +  +  +    DG  R   + L +P
Sbjct: 454 ALGLVRPATAALFARRMAERARAGALLEAPVATA-DYGAIGLPLPGDGIARRRIDLLRFP 512

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
             +++ L  + P+       ++  +  ++ YA Y  R   E + +   E  L+    DY+
Sbjct: 513 GATVERLTILVPEIESIDRAILSEVVEDAHYAPYIARHEAELRALAANEAILLDPALDYA 572

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++  LS E+ E+LS  +P  L QA++I+G+TPAAL  ++++ ++   
Sbjct: 573 AIGGLSREMVERLSKARPETLGQAARIDGVTPAALTAIMVHSRRRAA 619


>gi|320451555|ref|YP_004203651.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus scotoductus SA-01]
 gi|320151724|gb|ADW23102.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermus scotoductus SA-01]
          Length = 597

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 221/587 (37%), Positives = 323/587 (55%), Gaps = 20/587 (3%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              AL+T     IG M CNPA+GG GK  LV E+ AL GLMGR ADA  I  RVLN  KG
Sbjct: 26  VRVALVTINPERIGMMPCNPAVGGPGKSQLVAELTALGGLMGRAADATAIHTRVLNRSKG 85

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS 148
           PAV+  R Q DR+LY L  Q  +  +  ++VI+GEV     E   +  +   D   I   
Sbjct: 86  PAVQSLRVQVDRDLYALKAQEILAERP-VEVIRGEVVSLFVEGGRLLGVRTVDGREIPAK 144

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
            VV+  GTFL GV+  G+   PAGR G+ P+  L  S         R KTGTP R+   +
Sbjct: 145 AVVVAGGTFLGGVVWYGRRSRPAGRQGEPPARFLSRSLEAVGHTLRRFKTGTPPRIRADS 204

Query: 209 IIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           + + +         + P SF      +  ++    TRT   THR+I+EN+  S +Y+GDI
Sbjct: 205 VDFSELLVVPP--EVPPGSFTGSPGPHAAKLPTWQTRTTSRTHRLILENLHLSPLYAGDI 262

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
              GPRYCPSIEDK+VRF +++ H +F+EP+GL T  VY  G S++LP E+Q   ++++P
Sbjct: 263 VGIGPRYCPSIEDKVVRFSDKDSHLLFVEPDGLATSEVYLQGFSSSLPPELQEDMVKSLP 322

Query: 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           G  +  I R  YA+EYD ++P EL   L+++ + GLF AGQ+NGT+GYEEAAAQGL+AG+
Sbjct: 323 GFGRAVIQRYAYAVEYDSLDPTELTRGLQSRFLPGLFAAGQVNGTSGYEEAAAQGLLAGL 382

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+AR +  L  +   R   YIGVM+DDL  +G  EPYRM TSR E R+  R DNAD RL 
Sbjct: 383 NAARYALGLSEVHLPRESGYIGVMVDDLVGRGTDEPYRMMTSRVELRLLCRADNADERLV 442

Query: 448 PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF 507
           P+ ++ G       +   +  +        L++L +              DG   +   +
Sbjct: 443 PLAVEWGLRPREDLEAMREKYRRVEAELRRLEALRV--------------DGV--SGLVW 486

Query: 508 LSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKD 567
           L  P+ +   L    P     S     ++++ + YA Y  RQ    ++++  E   IP+ 
Sbjct: 487 LRRPENTYGALAERFPPPVPLSPEEAYQVEVRAKYAGYIERQEQLREKLRDLEGFRIPEG 546

Query: 568 FDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            ++  +P LS E  EKLS ++P  + +A+++ G+  + L  LL++++
Sbjct: 547 LEFPRIPGLSREAVEKLSRVRPRTVAEAARVPGIRDSDLTALLVHLR 593


>gi|28190317|gb|AAO33051.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 232/532 (43%), Positives = 316/532 (59%), Gaps = 5/532 (0%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M    D +GIQFR+LN  KGPAVR  R QADR LY   ++R +  Q NL +++
Sbjct: 1   IDALGGIMAEAIDHSGIQFRILNSSKGPAVRSTRAQADRLLYHKNIKRLLQKQSNLLILE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV         +  ++ Q+ +     +VVL TGTFL   IHIG      GR+GD  S  
Sbjct: 61  EEVKDLIFNNYTVKGVLTQNENNFFSKSVVLATGTFLGARIHIGLNSYSFGRIGDKSSID 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N          RLKTGTP R+D  TI  +    Q +D  +  FSF+ D   +  QI C
Sbjct: 121 LSNRLRDLSLRVNRLKTGTPPRIDINTIDLNDLFVQNSDNPIPVFSFIGDVANHPKQIPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            +T TN +TH II  N+  S IY G +K  GPRYCPSIEDK+VRF ++  HQIFLEPEGL
Sbjct: 181 YLTHTNEKTHEIIRNNLDKSPIYQGVLKGLGPRYCPSIEDKVVRFPDKKSHQIFLEPEGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           ++  +YPNGIST+LP +IQ + + +I GLEK  II PGYA+EYD+ +PK+L  TLE+K I
Sbjct: 241 SSLKIYPNGISTSLPLDIQKKLLTSIKGLEKSKIITPGYAVEYDFFDPKDLNLTLESKLI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
            GLF AGQINGTTGYEEAA+QGL+AG+N+   + +       R  +Y+GV+IDDLT+KG 
Sbjct: 301 KGLFFAGQINGTTGYEEAASQGLLAGLNAGLNAMERQHWFPRRDQAYLGVLIDDLTTKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFTSRAEYR+ LR DNAD RLT IG KLG + + R   + + +       + L++
Sbjct: 361 EEPYRMFTSRAEYRLLLREDNADLRLTEIGRKLGLVNDLRWSHYNEKLSNIKSEINRLQT 420

Query: 481 LVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERL 536
           L ++  +  S  +S           +  E L  P+   ++L  +    +  F   VIE++
Sbjct: 421 LKISPISPDSNFLSKYYRINLNHEISMIELLKRPEIKYKDLQLLEKFNKGIFDFQVIEQI 480

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           + +  Y  Y  RQ+ E       E   +  D DY+++  LS+E+ +KL+  K
Sbjct: 481 ENQIKYEGYIKRQLEEINRQIKNEHTFLSADCDYNTIKGLSSEVVKKLNYHK 532


>gi|328947709|ref|YP_004365046.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema succinifaciens DSM 2489]
 gi|328448033|gb|AEB13749.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Treponema succinifaciens DSM 2489]
          Length = 690

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/685 (38%), Positives = 354/685 (51%), Gaps = 75/685 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DV V GGGHAG EA+   A++G  T LIT    +IG MSCNP+IGG+ KG++VREIDA
Sbjct: 6   SFDVAVCGGGHAGIEASLACARMGLKTILITQSIDSIGRMSCNPSIGGIAKGNIVREIDA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR+ D + IQFR+LN  +GPAV+ PR+QAD+ +Y    +  + + ENL  +   V
Sbjct: 66  LGGEMGRLIDRSMIQFRMLNKSRGPAVQAPRSQADKIVYSSLARHVVETTENLSTLMDTV 125

Query: 125 AGFNT----------------------------------------EKNIISSIVMQDNSM 144
               T                                         +  I  +V +   +
Sbjct: 126 VDVLTVASDVPLPKDSSGSLESGSIPGEKRSGSSYTFATQACRSGMRQKIIGVVTERGRI 185

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I C   VLTTGTFL G I IG+   P GR+G+S    L  S  +  F TGRLKTGTP R+
Sbjct: 186 IPCRAAVLTTGTFLGGRIFIGEYDAPCGRLGESGVFGLTESLSRLGFTTGRLKTGTPPRI 245

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYS 264
              T+ + + E Q  D+ ++PFSF  +KI    + C +  TN ETH+II ENI  S +YS
Sbjct: 246 LKHTVDFSRFELQEGDKEILPFSFDDEKIERPMVPCHLVYTNEETHKIIRENINRSPLYS 305

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I   GPRYCPSIEDK++RF ERN HQ+F+EPEGL TD +Y NG+S++LPEE+Q  F+R
Sbjct: 306 GKISGVGPRYCPSIEDKVMRFAERNRHQLFVEPEGLETDEIYLNGLSSSLPEEVQDAFLR 365

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           T+PG E   + RPGYA+EYDY+ P +LFP+LETK+++GLF AGQINGT+GYEEAA QGLV
Sbjct: 366 TMPGFENCVVSRPGYAVEYDYVEPTQLFPSLETKRVAGLFNAGQINGTSGYEEAAGQGLV 425

Query: 385 AGINSARKSNKLDCICFSRTDS-YIGVMIDDLTSKGVLEPYRMFTSRAEYR---ISLRPD 440
           AGIN+A  + +   +C     S          +  G   P  +F S        IS R  
Sbjct: 426 AGINAALYAREHKKLCGPICASDSSFGSSPASSEPGKFMPKPVFNSDELKNFSEISARET 485

Query: 441 NA-DNRLTPIGMKLGCIGER-----------RQKRF--------------AKYIQEYNFL 474
            A   +L     + G                R + +                Y       
Sbjct: 486 EALSKKLKETQKEFGFDSFEKIPSYEPLVLGRDEAYIGVLIDDLVTLGTKEPYRMFTARA 545

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFS-IQNLFSICPDAR---KFS 529
              LK    T+ + L           K +     L Y          S  PDA     F+
Sbjct: 546 EYRLKLRHDTADRRLRKKGFVVGLISKAQFEQMNLKYQKVDEALEFLSKHPDAENPGNFN 605

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP 589
           SL     Q +  Y  Y  +Q     ++   E   IP DFDYS + ALS+E + KL  ++P
Sbjct: 606 SLEWTLAQEDFKYRYYIEKQDSRVAKMHRMENARIPADFDYSKIVALSSESRAKLEKIRP 665

Query: 590 FNLLQASKIEGMTPAALNLLLIYIK 614
             L QAS+I G+  + + LL++Y++
Sbjct: 666 LTLGQASRISGIRNSDIMLLMVYLR 690


>gi|170590250|ref|XP_001899885.1| Hypothetical 71.7 kDa protein F52H3.2 in chromosome II, putative
           [Brugia malayi]
 gi|158592517|gb|EDP31115.1| Hypothetical 71.7 kDa protein F52H3.2 in chromosome II, putative
           [Brugia malayi]
          Length = 638

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/599 (43%), Positives = 360/599 (60%), Gaps = 18/599 (3%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+T++  TIG MSCNP+ GG+GKGHL+RE+DALDGL GR+ D + I +  LN   GP
Sbjct: 42  HTLLLTNRKDTIGEMSCNPSFGGVGKGHLIREVDALDGLCGRICDKSAINYHALNSSHGP 101

Query: 90  AVRGPRTQADRELYRLAMQREILS-QENLDVIQGEVAGFNTEK-----NIISSIVMQDNS 143
           AV G R Q DR+LY+  MQ EIL+  +NLDV++  V     +        +  +V  D  
Sbjct: 102 AVLGLRAQIDRKLYKEYMQHEILNCTKNLDVMEKAVDDLVIKYEEGKTPRVGGVV-ADGE 160

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
           ++    +V+TTGTFL G +  G     AGR+G+  S+ L  +F +  F  GR +TGTPAR
Sbjct: 161 ILNAKALVVTTGTFLGGKLFRGSESYAAGRLGEKASSKLSETFSRLGFKLGRFRTGTPAR 220

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHS 260
           L   TI + K   Q  D + IPFSF+T+ I+   ++Q+   +  TN    ++++++    
Sbjct: 221 LFKNTIDFSKFAAQRPDRKPIPFSFLTEHISLPYHQQLPSYLGFTNNLLAQMVLKHFNEC 280

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
                  ++ GPRYCPS+E K++RF   N H+IFLEPEGL++D++YP G+S     E+Q 
Sbjct: 281 NYIRS--EANGPRYCPSLESKVIRFPHLN-HRIFLEPEGLDSDLIYPQGMSMTFAPEVQL 337

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           +  R IPGLE V I + GY IEYDY++PK+L  TL+TK + GLFLAGQINGTTGYEEAAA
Sbjct: 338 EVYRCIPGLENVEISQAGYGIEYDYVDPKQLKLTLQTKAVEGLFLAGQINGTTGYEEAAA 397

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPD 440
           QG+VAGIN+A  S         RT+ YIGV+IDDLTS G  EPYRMFTSRAE R+ LRPD
Sbjct: 398 QGIVAGINAAASSQNKKPFVIDRTEGYIGVLIDDLTSLGTSEPYRMFTSRAELRLHLRPD 457

Query: 441 NADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST--SISFKQD 498
           NAD RLT  G + G + E R  RF K +  YN  + LLKS+             +   + 
Sbjct: 458 NADMRLTKKGYEHGAVSEHRYNRFLKMLSAYNKAQDLLKSIKYPMNFWKKLIPCLENARV 517

Query: 499 GKTRTAYEFLSYPDFSIQNLFSICP-DARKF--SSLVIERLQIESSYAAYTGRQMIEAKE 555
            K  +A++ L   +     +    P +  +   +  +  RL+IE+ Y  Y  + + + + 
Sbjct: 518 TKVYSAFDLLCRYEVDFMEIQKAVPFELERLLENKEIEYRLKIEAXYYFYLDKSLAKIER 577

Query: 556 IKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           I+ E   +IP +FDYS L  +S E +EKL+  +P NL  AS++ G T  AL  LL ++K
Sbjct: 578 IRKECDTIIPDNFDYSKLNNISEECREKLNFWRPQNLAAASRVPGATTEALMELLNFLK 636


>gi|167518690|ref|XP_001743685.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777647|gb|EDQ91263.1| predicted protein [Monosiga brevicollis MX1]
          Length = 651

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/588 (43%), Positives = 358/588 (60%), Gaps = 14/588 (2%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T K  TIG MSCNP+ GG+GKG L+RE+DAL G+   + D AGI FRVLN  KGPAV 
Sbjct: 71  LVTQKLETIGEMSCNPSFGGVGKGILLREVDALGGVAPTICDRAGIHFRVLNRSKGPAVW 130

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT-EKNIISSIVMQDNSMIRCSTVV 151
           GPR Q DR +YR  MQ+ + SQ NLD+I   V        + ++ + + +  +I    VV
Sbjct: 131 GPRAQIDRSIYRSEMQQHMASQPNLDLIAAAVEDITVNGDHQVTGVALGNGQIIGTRAVV 190

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           +TTGTFLRGVI+IG    PAGR G+ PS  L  +   F F  GRL+TGTP R+   T+ +
Sbjct: 191 VTTGTFLRGVINIGAYFTPAGRKGEGPSVGLAQTLETFGFKLGRLRTGTPPRIKKSTVCF 250

Query: 212 DKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           D   +Q +D    PFS++ +++      I+C +T TN   H+++ + +  +     D  +
Sbjct: 251 DGLLEQPSDYPATPFSYLNERVALEDSFIQCHLTHTNSAAHQLVHDTLHENNHVRQD--A 308

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIE K       N HQ++LEPEGL++DV+YPNGIS  +PEE Q +F+R+I GL
Sbjct: 309 LGPRYCPSIESKA------NRHQVWLEPEGLDSDVIYPNGISMTMPEEAQLRFVRSIAGL 362

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           E   I + GY + YD+++P++L  TLETK I  LFLAGQINGTTGYEEAA+QG++AGIN+
Sbjct: 363 ENAQITQLGYGVSYDFVDPRQLHRTLETKMIHSLFLAGQINGTTGYEEAASQGIIAGINA 422

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           A K          RT +YIGV+IDDL +KGVLEPYRMFTSRAEYR+SLR DNAD RLT +
Sbjct: 423 ALKVRGEPSFTVDRTQAYIGVLIDDLVTKGVLEPYRMFTSRAEYRLSLRSDNADTRLTAL 482

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS--ISFK-QDGKTRTAYE 506
           G   G + E R + F +  +E   L  LL+S+ LT    +S     S +    K  +   
Sbjct: 483 GHACGAVDEPRFQHFCQQQKELAELTQLLESVELTPHEWNSGGWYNSLRCGLLKPCSVAS 542

Query: 507 FLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPK 566
            +++   S      + P  R F+  ++ER++IE+ YA    RQ   A+  + +    IP 
Sbjct: 543 MMAFGFVSDSTAADLVPALRSFNPRLVERVKIEAMYAHMMNRQRASAESYRRQASLEIPP 602

Query: 567 DFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            F +  + +L  E  E+L    P  +  A++I+G+TP AL  L+  ++
Sbjct: 603 GFAFEKVHSLPLEALERLREHAPRTIGDAAQIQGITPDALARLVRALQ 650


>gi|2281305|gb|AAC45494.1| glucose inhibited division protein homolog GidA [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 535

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 229/524 (43%), Positives = 310/524 (59%), Gaps = 8/524 (1%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+T   + +  M CNP+IGG  KG +VREIDAL G MGR  D   IQ ++LN  KGP
Sbjct: 12  KTLLMTINLNMVAFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNTGKGP 71

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRC 147
           AVR  R QAD++ Y  +M+  +  QENL + QG V       EK  +  +     +    
Sbjct: 72  AVRALRAQADKDEYAASMKNTVSDQENLTLRQGMVEELILDDEKQKVIGVRTSTGTQYGA 131

Query: 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGK 207
             V++TTGT LRG I IG+LK  +G      S  L ++  +  F+ GR KTGTP R+   
Sbjct: 132 KAVIITTGTALRGEIIIGELKYSSGPNNSLSSIGLADNLREIGFEIGRFKTGTPPRVLAS 191

Query: 208 TIIWDKTEKQFADERLIPFSFMT--DKITNRQIECGITRTNLETHRIIMENIKHSAIYSG 265
           +I +DKTE Q  DE    FSFM+  +     QI C +T T   +H I+ +N+  + ++SG
Sbjct: 192 SIDYDKTEIQPGDEAPNHFSFMSSDEDYLKDQIPCWLTYTTENSHTILRDNLHRAPLFSG 251

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +K  GPRYCPSIEDKI RF ++  HQ+FLEPEG NT+ VY  G+ST++PE++Q   +++
Sbjct: 252 IVKGVGPRYCPSIEDKITRFADKPRHQLFLEPEGRNTEEVYIGGLSTSMPEDVQFDLVKS 311

Query: 326 IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVA 385
           IPGLE   ++RPGYAIEYD + P +L PTLETK ISGLF AGQ NGT+GYEEAA QGLVA
Sbjct: 312 IPGLENAKMMRPGYAIEYDVVMPHQLRPTLETKLISGLFTAGQTNGTSGYEEAAGQGLVA 371

Query: 386 GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
           GIN+A K          R+++YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD R
Sbjct: 372 GINAALKIQGKPEFILKRSEAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNADRR 431

Query: 446 LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS---KNLSSTSISFKQDGKTR 502
           LT IG ++G + + + + +   + +++     L S  L            + F       
Sbjct: 432 LTEIGRQVGLVSDAQWEHYQAKMAQFDREMKRLNSEKLKPLPDTQEKLGKLGFGPIKDAL 491

Query: 503 TAYEFLSYPDFSIQNLFSICPDARK-FSSLVIERLQIESSYAAY 545
           T  EFL  P+ +   +      A +     V E ++ E +Y  Y
Sbjct: 492 TGAEFLKRPEVNYDEVIDFIGQAPEVIDRTVSELIETEITYEGY 535


>gi|19112323|ref|NP_595531.1| mitochondrial tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme [Schizosaccharomyces pombe 972h-]
 gi|3915337|sp|O13670|MTO1_SCHPO RecName: Full=Protein MTO1 homolog, mitochondrial; Flags: Precursor
 gi|2257569|dbj|BAA21461.1| HYPOTHETICAL 75.4KD PROTEIN IN HAP2-ADE 5,6 INTERGENIC REGION
           [Schizosaccharomyces pombe]
 gi|3417432|emb|CAA20319.1| mitochondrial tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme [Schizosaccharomyces pombe]
          Length = 666

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/609 (41%), Positives = 364/609 (59%), Gaps = 17/609 (2%)

Query: 25  AKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN 84
           ++LGA T L+T     IG MSCNPA GG+GKG L+REIDAL G++  V D + IQF +LN
Sbjct: 36  SRLGAKTTLLTKSFDNIGQMSCNPAFGGIGKGTLMREIDALGGVVSGVCDESAIQFHMLN 95

Query: 85  VKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEVAGFNT-----EKNIISSIV 138
              GPAV  PR Q DR +++  MQ+ I +  +NL V +G     N       K +  SIV
Sbjct: 96  RSNGPAVWSPRAQMDRSVFKKNMQKTISTYRKNLQVREGAAVSINVLTEDDGKQVCDSIV 155

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
           ++D + I  S +V+TTGTFL G I++G  ++ AGR G+ PS  L        F  GRLKT
Sbjct: 156 LEDGTAIPASCIVITTGTFLGGQINVGLTQLAAGRYGERPSLPLSKCLSNLGFKMGRLKT 215

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE---CGITRTNLETHRIIM 254
           GTP RL    I   K  +Q  DE    FSF+  ++  +  +    C  T T   TH I+ 
Sbjct: 216 GTPPRLSSP-INISKMTEQTGDEIPETFSFLNLERDFSPALPQRSCYRTYTTELTHEIVR 274

Query: 255 ENIKHSA-IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD-VVYPNGIST 312
           +N+  +  + +GDI S  PRYCPS+E K+ RF  +  H I+LEPEGL+ +   YPNG+S 
Sbjct: 275 KNLAFAPHMLAGDILS--PRYCPSLEAKVTRFPHKARHLIWLEPEGLDPNSWWYPNGLSN 332

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT 372
           ++PEEIQH  IR+IPGLE  NI+RP Y + YDY+ P +L  TLETKKI GL+LAGQINGT
Sbjct: 333 SMPEEIQHNIIRSIPGLENCNIVRPAYGVMYDYVIPTQLKATLETKKIQGLYLAGQINGT 392

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAE 432
           TGYEEAAAQG++AG+N+   +   + +   R  + +GVM+DDL +KGV EPYR+FTSR+E
Sbjct: 393 TGYEEAAAQGILAGLNAGLSALGREPVDIPRNTALLGVMVDDLITKGVKEPYRVFTSRSE 452

Query: 433 YRISLRPDNADNRLTPIGMKLGCIGER-RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           YR++ R DNAD RLTP+   +G + ++   + F +     +F   + K  +L+ +  S  
Sbjct: 453 YRLTTRADNADLRLTPLAQSIGLLDDQTHWESFQRTKSLLDFSNKIAKEFILSPQQWSKL 512

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
            +    DGK R+A++ LS+ +  +  + S  P  +     V++RL IE  Y  Y  RQ  
Sbjct: 513 GMPIPNDGKYRSAWDLLSFTNLDLFCVISCIPKLKDIPKRVLQRLIIEGKYTYYIKRQGT 572

Query: 552 EAKEIK-FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           + K++   +E  +IP DFD+ +L ++S E    L  ++P  + Q  +I+G+ P  +  LL
Sbjct: 573 QNKQLNCRDESTVIPSDFDFDTLHSVSAEELMLLKTIRPATIGQLKRIQGIKPGTIIRLL 632

Query: 611 IYIKKNTVK 619
            +   N  K
Sbjct: 633 RHTYYNPAK 641


>gi|156088059|ref|XP_001611436.1| glucose inhibited division protein A family protein [Babesia bovis]
 gi|154798690|gb|EDO07868.1| glucose inhibited division protein A family protein [Babesia bovis]
          Length = 711

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/683 (37%), Positives = 366/683 (53%), Gaps = 75/683 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGGHAGCEAAA +A++GA T LIT +  TIG MSCNP++GG+GKG++V EIDALD
Sbjct: 33  DVVIIGGGHAGCEAAAASARVGAKTLLITARKETIGEMSCNPSVGGIGKGNIVCEIDALD 92

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MGR AD   + + +LN  +GPAVRGPR Q DR++Y  A++R I +  NL V +G V  
Sbjct: 93  GIMGRAADEGAVMYHLLNSSRGPAVRGPRAQTDRDVYARAVRRLINNYSNLHVEEGMVDD 152

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM------GDSPSN 180
              +   +  +++ +   I C +VV+TTGTFLRG  H  K  IP GR        + P+ 
Sbjct: 153 IVVDGGAVRGVILSNGRNINCKSVVVTTGTFLRGRCHRSKNLIPGGRFDRLNQNFELPAE 212

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITNR 236
            L ++F +    T R KTGTP RL   TI +D  E Q++DE  IPFS++     + + + 
Sbjct: 213 GLCSTFKRLGISTNRFKTGTPPRLKRDTINYDILEVQYSDEHPIPFSYLNVDTSNLLNHG 272

Query: 237 QIECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
            I+C  TRT+  TH I+ EN+     Y SG     GPRYCPS+  KI RF + N H ++L
Sbjct: 273 VIQCYKTRTHKATHSIVRENLHLLPDYESGYGIGLGPRYCPSLPAKITRFPDVNHHIVWL 332

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
           EPEG+++ +VYPNG+S A P+E+Q + +RTIPGLE V I  PGY +EYDYI+ + L  TL
Sbjct: 333 EPEGVDSHLVYPNGLSGAFPQEVQLKLLRTIPGLENVEIDTPGYDVEYDYIDARLLKHTL 392

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIGVMIDD 414
           E K I  L+ AGQI GTTGYEEAA  G+VAG N+A  S         +R+D YIGV+IDD
Sbjct: 393 EFKHIKQLYFAGQICGTTGYEEAAGMGIVAGCNAALSSLNTNKEFVLNRSDGYIGVLIDD 452

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNF 473
           L  KG  EPYRMFTSRAE R+ LR DNAD R+   G+    I    R     +   +   
Sbjct: 453 LVRKGTNEPYRMFTSRAEDRLFLRIDNADLRMLKKGLYCELIKNPERLNNIREKYVKVQA 512

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--------- 524
             + L++++L       +     +  +++  ++ L     +I  + +I  +         
Sbjct: 513 AINRLRTIILPMNRWDPSF----KSSESKNGWDMLGTSGMTIDRIEAIVNEYYPKGTIAT 568

Query: 525 -----------------------------------ARKFSSLVIERLQIESSYAAYTGRQ 549
                                                ++S  +   ++    YA +  RQ
Sbjct: 569 VCKHKMSTAENEGLAKAFETAEENLNTQANKISGKLTEYSMQIRNVIEARCKYAPFVERQ 628

Query: 550 MIEAKEIKFEEKRLIPKDFDYS--------------SLPALSNELKEKLSILKPFNLLQA 595
             + +         I  D +Y+                  LS E  E L+  +P  + +A
Sbjct: 629 AKQMERTLRGGSVPICPDMEYTRYACFSDFNVCHREQFAFLSKEEVEVLNKYRPGTISEA 688

Query: 596 SKIEGMTPAALNLLLIYIKKNTV 618
           + + G+TPA++ LL   I K   
Sbjct: 689 ADLPGVTPASITLLAAQIHKTQR 711


>gi|15805068|ref|NP_293753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus radiodurans R1]
 gi|21263701|sp|Q9RYC3|MNMG_DEIRA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|6457686|gb|AAF09619.1|AE001866_6 gidA protein [Deinococcus radiodurans R1]
          Length = 600

 Score =  589 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/616 (39%), Positives = 353/616 (57%), Gaps = 20/616 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + ++VIVIGGGHAG EAA  AAK  +  AL+    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 2   KGWNVIVIGGGHAGLEAAWAAAKF-SRVALLVGNPATVGRMPCNPAVGGPGKSQLVFEVQ 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  R+LN  KGPAV+  R Q +R+ Y    Q  I     +++++GE
Sbjct: 61  ALGGLMGRLADDTAIHTRMLNASKGPAVQSLRVQNERDAYAERAQDVIFGHSEIEIVRGE 120

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D   +   +VVL  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 121 AADLEQDGQGGWVVVTSDGRRLHARSVVLAAGTFMRGVTWYGRQSRPEGRQGEPPSRFLS 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +      R KTGTP R+   ++ +    +  AD +   F+  T      +     T
Sbjct: 181 APLERGGHVLKRYKTGTPPRVRADSVRFADLLEIPADPQPRGFT-GTPGPRAAESPTWQT 239

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  +TH +I EN+  S +Y+GDI+  GPRYCPSIEDK+V+F   + H +F+EP+G+ T 
Sbjct: 240 HTTPQTHALIQENLHESPMYAGDIEGLGPRYCPSIEDKVVKFAHHDRHLLFVEPDGVQTS 299

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G S++LP  +Q + +RT+PG E+  I R  YA+EYD ++  EL   LE+KK+ GL
Sbjct: 300 EVYLQGFSSSLPPRLQDELVRTLPGFEQAVIQRYAYAVEYDVVDSTELTLNLESKKLPGL 359

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+NGT+GYEEAAAQGLVAG  +AR+S  LD     R  SY+GV++DDL  KG  EP
Sbjct: 360 FTAGQLNGTSGYEEAAAQGLVAGTAAARRSLGLDEQVIGRETSYLGVLLDDLVFKGSDEP 419

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR E+R+ +R DNAD R+TPIG  LG + +       +  ++Y  ++S +KSL  
Sbjct: 420 YRMMTSRVEHRLLVRQDNADERMTPIGHALGLVDD---AELIRVQEKYARVQSGIKSLS- 475

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR-KFSSLVIERLQIESSY 542
                       KQ  + +TA  +L  P+ S+ ++ ++      +  +   E ++I   Y
Sbjct: 476 ------------KQRMQGQTADAWLRRPELSLADVETLGATLPAELGASEREAVEIRVKY 523

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  R   + +      +  +    +++ + ALSNE +EKL+ L+P  + QAS+I G+ 
Sbjct: 524 AGYIARAESQLRSEAKARELSL-SGVNFAGITALSNEAREKLTRLQPQTVEQASRISGVR 582

Query: 603 PAALNLLLIYIKKNTV 618
            A ++ LL+++K   V
Sbjct: 583 HADISALLVHLKGQRV 598


>gi|13508296|ref|NP_110246.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pneumoniae M129]
 gi|2494735|sp|P75221|MNMG_MYCPN RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|1673956|gb|AAB95933.1| NADH-binding oxidoreductase GidA [Mycoplasma pneumoniae M129]
 gi|301633329|gb|ADK86883.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma pneumoniae FH]
          Length = 612

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 219/611 (35%), Positives = 341/611 (55%), Gaps = 6/611 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+ + VIGGGHAG EAA +A+KLG    L+    + +GS  CNPAIGG  KG + REID 
Sbjct: 2   SFTLTVIGGGHAGLEAAFIASKLGLKVNLLVLDPNHVGSCPCNPAIGGPAKGIVTREIDV 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+ G+ ADA  +Q+++LN  KGPAV+  R Q D+  Y+   +++I    N+++I GE 
Sbjct: 62  LGGMQGKAADATALQYKLLNSSKGPAVQAIRAQIDKIAYQKWFRQQIDQTPNIELIAGEA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +  +V+ D S +    V++TTGT+L+   + G L    G      S  L  
Sbjct: 122 VDILESNGKVKGVVLADGSELASDAVIVTTGTYLKAKTYCGSLSKEEGPDRAKRSEYLST 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
           + +K  F T RLKTGTP R+  +++ + +   +      + FSF T       +Q+ C +
Sbjct: 182 NLIKRGFKTLRLKTGTPPRILRESLDFSQMAVEANTTPHLAFSFTTKNYLPLEQQVICHL 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN + H++I+ N+K SA+++G IK+ GP YCPSIEDK+ RF ++  HQIF+EPE L+ 
Sbjct: 242 IHTNPQIHQLILANLKQSAVFNGSIKANGPLYCPSIEDKVFRFQDKERHQIFVEPESLSL 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           + VY  G ST+ P E+Q   +R +PG +     + GYAIEYD  +  +L  TLETK I  
Sbjct: 302 ETVYLAGFSTSFPPEVQEHIVRLLPGFKNARFQKYGYAIEYDAFSSIQLKSTLETKLIQN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A K  +       R ++Y+GVMI+DL +K + +
Sbjct: 362 LYFAGQINGTSGYEEAAGQGLIAGINAALKLQRKPEFVLQRNEAYLGVMINDLVTKEISD 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAE+R+ LR DN   RL      LG +       + +  Q+   L   L++  
Sbjct: 422 PYRLLTSRAEHRLWLRNDNLQERLIEKSRALGLVEADVYANYLEQQQKKKQLIDYLQTTT 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +    +++  ++FK   +  T ++F    +  + +L  + P         + ++ I+  Y
Sbjct: 482 VG--QIAALKLNFKNTAQ--TLFDFTKRAEIKLVDLVQLLPKRFDLDVQSLNQIDIDIKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
           A Y  +     K +       IP   +Y  +P L++E   KLS ++P +L  AS++ G+ 
Sbjct: 538 AGYIKKSEKYFKSLNNLSSVKIPLKLNYHKVPNLASEAIVKLSKIRPTDLSVASQVAGIN 597

Query: 603 PAALNLLLIYI 613
              +  +  ++
Sbjct: 598 FNDILAIKHFL 608


>gi|28190321|gb|AAO33053.1| glucose-inhibited division protein [Buchnera aphidicola]
          Length = 532

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/533 (45%), Positives = 333/533 (62%), Gaps = 7/533 (1%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+M + +D +GIQFR+LN +KGPAVR  R Q DR++Y   ++  I SQ+ + +++
Sbjct: 1   IDALGGVMAKASDKSGIQFRILNSRKGPAVRSTRAQVDRKIYSQNIKDIIKSQKKIFLLE 60

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GEV     +      I+M D +     TV+LTTGTFL G I+IG      GR+ D+ S  
Sbjct: 61  GEVKDLIIKNYCSKGIIMCDGTQFLSQTVILTTGTFLGGKIYIGLXSFEGGRIDDNASIH 120

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L N   +   +  RLKTGTP RLD +TI ++  + Q +D  L  FSF  + + +  QI C
Sbjct: 121 LANRLRELPINVSRLKTGTPPRLDKRTINFELLQSQHSDSPLPVFSFTGNILDHPKQIPC 180

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH II +N+K SAIYSG +K  GPRYCPSIEDKI+RF ++  HQIFLEP GL
Sbjct: 181 YITHTNSKTHSIIKDNLKFSAIYSGILKGIGPRYCPSIEDKIIRFSDKLSHQIFLEPGGL 240

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           +   +YPNG+ST+LPE+IQ + IR+I GLEK  IIRPGYA+EYDY +P+ L  TLE+K I
Sbjct: 241 SGIEIYPNGVSTSLPEKIQKKMIRSIQGLEKAKIIRPGYAVEYDYFDPRHLKLTLESKFI 300

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAA+QGL+AGIN++  +   +     R ++YIGV+IDDL +KG 
Sbjct: 301 SGLFLAGQINGTTGYEEAASQGLLAGINASLCTLNKNEWFPKRNEAYIGVLIDDLCTKGT 360

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMFT+RAE+R+ LR DNAD RLT  G KLG I E R KRF + ++      + LKS
Sbjct: 361 KEPYRMFTARAEHRLILREDNADLRLTEQGRKLGLIDEGRWKRFNQKLENIESELTRLKS 420

Query: 481 LVLTSK----NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIER 535
           L +       N   T ++   + K+  A + L  P+ +   L S+             ++
Sbjct: 421 LTINPNSKDANTLXTFLNINLNIKS-NAKDLLKRPEITYNYLMSLKQFGPGIQDVEAAQQ 479

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           ++I+  Y  Y  RQ  E  +   +E  L+    +Y  +  LSNE+  KL+  K
Sbjct: 480 IEIQEKYKGYILRQQHEITQNLKKENILLSVINNYQEVKGLSNEVIMKLNYYK 532


>gi|317419350|emb|CBN81387.1| 'Protein MTO1 homolog, mitochondrial ' [Dicentrarchus labrax]
          Length = 692

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 277/638 (43%), Positives = 389/638 (60%), Gaps = 31/638 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGGHAG EAAA AA++GA T L+T K  TIG++SCNP++GG+GKG LV+E+D
Sbjct: 26  QQYDVIVVGGGHAGTEAAAAAARVGAETLLVTQKIHTIGALSCNPSLGGVGKGQLVKEVD 85

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ALDGL GR  D AGI F +LN +KGPAV GPR Q DRE YR  +Q E+LS   L V++G 
Sbjct: 86  ALDGLCGRAGDWAGIHFSILNRRKGPAVWGPRAQLDRERYRKFIQSELLSTPRLTVVEGS 145

Query: 124 VAGFNT--------EKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V               + ++ I +++ S  I  S+V+LTTGTFL G + +G+   P GR+
Sbjct: 146 VEDLLVTEPNPEEPGHHKVTGIRLENGSDPISASSVILTTGTFLTGSLFMGQTMSPGGRI 205

Query: 175 GDSPSNSLFNSFM--KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           GD+PS++  +  M  +     GRL+TGTP R+   ++   +      D    PFSF+   
Sbjct: 206 GDAPSSAGLSRTMRERLGLRIGRLRTGTPPRIVKDSVDLAQAHLHLPDSPPTPFSFLNTH 265

Query: 233 ---ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
                  Q+ C +T T     R++ E++  +     D K  GPRYCPSIE +++RF  R 
Sbjct: 266 TRCKPEEQLPCYLTYTTPGVERVVQESLHLNCHIQQDAK--GPRYCPSIESRVLRFPGR- 322

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG----------- 338
            HQ++LEPEG+ +D++YP G+S  +P +IQ + IR IP + +  I  PG           
Sbjct: 323 KHQVWLEPEGVTSDLLYPQGLSMTMPPDIQLRLIREIPAMHRAEIHTPGTRPESCLIACS 382

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           Y ++YD++ P +L P L+ K   GLFLAGQINGTTGYEEAAAQGL AG+N+AR +  +  
Sbjct: 383 YGVQYDFVCPTQLSPALQVKSTQGLFLAGQINGTTGYEEAAAQGLWAGVNAARWALSMPA 442

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIG 457
           +  SRT+SYIGV+IDDL S+GV EPYRMFTSRAE+R SLRPDNAD RLT  G  ++GC+ 
Sbjct: 443 VTLSRTESYIGVLIDDLVSRGVTEPYRMFTSRAEFRTSLRPDNADLRLTLKGFEEVGCVS 502

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN 517
             R +   +     +   + L+SLVL+S N     +      + +   + L Y D S + 
Sbjct: 503 SLRYQEAVRVRDSLHEALAALQSLVLSSPNWKKK-LPDIHICEAKNGMDVLQYSDVSFEM 561

Query: 518 LFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP-AL 576
           L S  P+         +RL+IE+ Y  +   Q  E   I+ EE   +P+D DY SLP +L
Sbjct: 562 LASAFPECLSPYMEFSQRLKIEAVYKRHCDLQRKEIARIQKEENMSLPQDMDYISLPVSL 621

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           SNE +E L  ++P  L  A++++G+TPAA+  LL Y++
Sbjct: 622 SNEAREILDRVRPSTLGAATRLQGITPAAIVHLLHYVR 659


>gi|149919588|ref|ZP_01908067.1| glucose inhibited division protein A [Plesiocystis pacifica SIR-1]
 gi|149819531|gb|EDM78959.1| glucose inhibited division protein A [Plesiocystis pacifica SIR-1]
          Length = 579

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/622 (39%), Positives = 334/622 (53%), Gaps = 53/622 (8%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+G GHAG EAA   A+LG +  ++T    TIG   CNP+IGG+ KGHLV EI AL G 
Sbjct: 2   IVVGAGHAGLEAAFAGARLGVAVTVVTGSVGTIGQTPCNPSIGGVAKGHLVHEIHALGGF 61

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           MG+ ADA  I  R LN+ KGPAV   R Q D+  Y    Q  IL    + V +G V    
Sbjct: 62  MGKAADACAIHGRKLNLSKGPAVHSTRLQVDKLRYGAFAQAAILDHPGVVVREGLVVAVE 121

Query: 129 T-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             +   ++ + + D   +    VV+TTGTFL GV+H G  K P GR+G++P+  L     
Sbjct: 122 VGDDGAVTGVRLADGERVAGQAVVVTTGTFLGGVLHTGSTKTPGGRVGEAPATELSTQLA 181

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE---CGITR 244
              F   RLKTGTP RLD  TI W   E Q +D+    F    +     ++    C IT 
Sbjct: 182 TLGFRLVRLKTGTPPRLDRTTIDWGALEAQGSDDPFPRFCAPDEPDAPPRLPEAHCYITH 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG-LNTD 303
           TN E H +I E +  S +YSG I+  GPRYCPSIEDK+VRF +R  HQIFLEPEG     
Sbjct: 242 TNAEVHALIRERLYESPMYSGQIEGVGPRYCPSIEDKVVRFADRERHQIFLEPEGLQPDA 301

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
           ++YPNGIST+LP E+Q + +R I GLE   I+RPGYA+EYD ++ + L   L +  I GL
Sbjct: 302 LIYPNGISTSLPAEVQVEMVRGIAGLEAARIVRPGYAVEYDAVDARALNHALASDAIPGL 361

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQINGT+GYEEA  QGL+AG N+A +    + +   R  +Y GV++DDL + G  EP
Sbjct: 362 AFAGQINGTSGYEEAGIQGLLAGANAALRLLGREPLELGRDQAYGGVLVDDLVTVGCDEP 421

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RL  I    G I   R +R  + ++              
Sbjct: 422 YRMFTSRAEYRLLLREDNADERLAGIAHAHGLIPTARWERILRRLERVAACV-------- 473

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
                         DG+                             + ++ + +   +YA
Sbjct: 474 --------------DGRAN----------------------EEGEEAWIVAKARARKTYA 497

Query: 544 AYTGRQMIEAKEIKFEE-KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
            Y  RQ  E   I+ E     +P D DY ++  L+ E  E+L+ ++P +  QA++I GMT
Sbjct: 498 GYLERQRREVARIRGETGNLPLPADLDYFAIEGLTRESAERLARVQPSSTAQAARIPGMT 557

Query: 603 PAALNLLLIY---IKKNTVKLN 621
           PAAL+ +  +   +K+   + N
Sbjct: 558 PAALSCVWAHARILKRQRARQN 579


>gi|315928776|gb|EFV08048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 531

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 231/526 (43%), Positives = 314/526 (59%), Gaps = 3/526 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+  + ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIITRNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     ++     V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQIQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
            N ++    S+   +        + ++   F I+ L ++    + +
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKNLTLYLKPW 527


>gi|255074319|ref|XP_002500834.1| predicted protein [Micromonas sp. RCC299]
 gi|226516097|gb|ACO62092.1| predicted protein [Micromonas sp. RCC299]
          Length = 731

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 259/624 (41%), Positives = 356/624 (57%), Gaps = 38/624 (6%)

Query: 33  LITHK-TSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
           L+T     ++G MSCNP+IGGL KG LVREIDAL G+MG  ADA+GIQFRVLN  KGPAV
Sbjct: 87  LVTPSPLGSVGEMSCNPSIGGLAKGALVREIDALGGIMGAAADASGIQFRVLNASKGPAV 146

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
           RGPR Q DR  Y+ ++Q  +    N++V+        T    ++ +   D   I    VV
Sbjct: 147 RGPRAQMDRTTYKRSVQAMLFGTPNVEVVDAAAYDLIT--CAVAGVETADGRKITAEAVV 204

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDS-----------PSNSLFNSFMKFDFDTGRLKTGT 200
           + TGTFLRGV+H+G  +IPAGRM  +            +++L +      F  GRLKTGT
Sbjct: 205 VATGTFLRGVLHVGGRRIPAGRMPTAITENPDATAARGAHALADRLYGLGFQMGRLKTGT 264

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDK---ITNRQIECGITRTNLETHRIIMENI 257
           P RLDG +I +   E+Q  DE   PF F+ DK      +Q+ C  TRTN ET R++ E+ 
Sbjct: 265 PPRLDGASIDYSGLEEQRGDEPPRPFGFLHDKAWVPPMKQVSCWATRTNAETERVMKESR 324

Query: 258 KHSAIYSGD-IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
                  G+  ++ GPRYCPS+E K+ RF  R  H ++LEPEGL+TDVVYPNG+S  L E
Sbjct: 325 GFLNFEGGENGEAIGPRYCPSLEMKVKRFPGR-SHIVWLEPEGLDTDVVYPNGLSNTLDE 383

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
             Q   +RT+ GLE V ++RPGY +EYDY++P+EL  TLETK++ GLF AGQINGTTGYE
Sbjct: 384 PDQIAMLRTVAGLENVKMLRPGYGVEYDYVDPRELRWTLETKRVGGLFFAGQINGTTGYE 443

Query: 377 EAAAQGLVAGINSARKSNKL------DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           EAAAQGLVAG N+A  +               R  SY+GV++DDLT +G  EPYRMF+SR
Sbjct: 444 EAAAQGLVAGANAAATALSRLGMDALPPSIVGRGASYLGVLVDDLTRRGTSEPYRMFSSR 503

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
            E+R+S+RPDNAD RLT  G   G +   R     +     +   + L+   + ++  ++
Sbjct: 504 VEHRLSVRPDNADQRLTAAGELAGLVDSARALIARRRGDATDRAIAALEDARMGAQAWAA 563

Query: 491 TSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK----------FSSLVIERLQ 537
             +      + G+T +A E L+ P      + S   +A K                +   
Sbjct: 564 HGVDNAPAGKSGRTVSAAELLAIPGVGYARVTSALAEAGKTTGESTASGGIDDSRADSAT 623

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           +E  YA Y  RQ  + + ++ EE   +P D DY ++  LS E +EKL   +P  L  A +
Sbjct: 624 VECYYAPYLARQRRDVETMRKEEAMELPMDLDYDAVGGLSAEDREKLKEFRPATLAAAQR 683

Query: 598 IEGMTPAALNLLLIYIKKNTVKLN 621
           I G+TP+A   L  ++    +K N
Sbjct: 684 ISGVTPSAAIALFRFVAAQKLKGN 707


>gi|315932332|gb|EFV11275.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 516

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 231/515 (44%), Positives = 310/515 (60%), Gaps = 3/515 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTILIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AV+G R Q D + YR+ ++ ++L   NL++ Q + +
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIVRNKLLKLPNLEISQEQAS 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L N 
Sbjct: 122 VLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHVGENKLQAGRVGELASVNLGNY 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                   GRLKTGT  R+D K+I +   E Q  D     FSF +      Q+ C I RT
Sbjct: 182 LQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNPKAFSFRSRNFNPTQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E   I R GYAIEYDYI P EL  TLE KKI  L+ 
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEPTELKHTLELKKIKNLYC 361

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEAAAQG +AGIN++   +  + +   R ++YIGV+IDDL  KG  EPYR
Sbjct: 362 AGQINGTTGYEEAAAQGFIAGINASLSIDMKEPLILRRDEAYIGVLIDDLVVKGTKEPYR 421

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAE+R+ LR +NA  RL   G  LG + E+                  L S   T 
Sbjct: 422 MFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIANNLQKGLEFLLSKEFTP 481

Query: 486 KNLSST---SISFKQDGKTRTAYEFLSYPDFSIQN 517
            N ++    S+   +        + ++   F I+N
Sbjct: 482 NNQNNAFLESLGEDKISSIVNLQKIVARASFDIEN 516


>gi|320587853|gb|EFX00328.1| mitochondrial translation optimization protein [Grosmannia clavigera
            kw1407]
          Length = 1223

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 252/618 (40%), Positives = 351/618 (56%), Gaps = 54/618 (8%)

Query: 33   LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
            LIT K   +G  SCNP+ GG+GKG ++REIDALDGL+GRV D AG+QFRVLN  KGPAV 
Sbjct: 601  LITPKLDNLGVCSCNPSFGGIGKGIILREIDALDGLVGRVVDQAGVQFRVLNRSKGPAVW 660

Query: 93   GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK--------------------- 131
            GPR Q DR LY+  M+  +    NL +++G V+     +                     
Sbjct: 661  GPRAQIDRGLYKQHMREMLEGYPNLSILEGSVSDIVVAEARGDEWRMGGVEENGYEKQQA 720

Query: 132  -NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
               I+ + ++   ++R   VV+TTGTFL G IHIG    PAGRMG++P+  L  S  +  
Sbjct: 721  SRRITGVRLETGEVVRTGRVVITTGTFLGGEIHIGMETRPAGRMGEAPTYGLSRSLREAG 780

Query: 191  FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE-----CGITRT 245
            F  GRLKTGTP RLD +TI +   E Q  DE  +PFS+M   +     E     C  T T
Sbjct: 781  FALGRLKTGTPPRLDRRTIDYGALEAQRGDEPAVPFSYMDSTVAVSSREGGQLLCHATYT 840

Query: 246  NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
            N  TH I+  N+  +      +K  GPRYCPS+E K+ RFG +  H ++LEPEG  +DVV
Sbjct: 841  NAATHAIVRANLDKTVHIRESVK--GPRYCPSLESKVQRFGHKERHIVWLEPEGFGSDVV 898

Query: 306  YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
            YPNG+S  +P   Q Q +RTI GLE+V +++PGY +EYDY++P+ L  TLETK I+GL+L
Sbjct: 899  YPNGLSMTVPATAQEQLLRTIGGLERVTMLQPGYGVEYDYVDPRGLRATLETKAIAGLYL 958

Query: 366  AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
            AGQINGTTGYEEAA QG+VAGIN+ R +  L+                     GV EPYR
Sbjct: 959  AGQINGTTGYEEAAGQGVVAGINAGRAAQGLEA--------------------GVSEPYR 998

Query: 426  MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
            MFT+R+E+R+S R DNAD RLTP+G + G +G+ R  RF +   +   LR +L++ V ++
Sbjct: 999  MFTTRSEFRLSARFDNADARLTPLGRRWGVVGDVRWARFERDRDQAAALRGVLQTTVRSA 1058

Query: 486  KNLSSTSISFKQDGKTRTAYEFLSYPDFS-IQNLFS----ICPDARKFSSLVIERLQIES 540
                    + + D + R   + L       I +L +           FS+ +  R+ IE+
Sbjct: 1059 PAWRRLGFAVRDDSRMRDGLDMLRVGGVDGIDDLVARGGVDALLVDAFSADIRRRVAIEA 1118

Query: 541  SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
             YA Y   Q +E   +  ++   +P D DY+++  LS   K  L+  +P +L QA ++EG
Sbjct: 1119 MYAPYETIQSVERARVARDDALRLPTDLDYAAVVGLSLAEKAVLAATRPESLAQARRVEG 1178

Query: 601  MTPAALNLLLIYIKKNTV 618
            MTP     LL ++ +   
Sbjct: 1179 MTPVGCVRLLAHVHRTRQ 1196


>gi|94986434|ref|YP_605798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Deinococcus geothermalis DSM 11300]
 gi|94556715|gb|ABF46629.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme, GidA [Deinococcus geothermalis DSM
           11300]
          Length = 614

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/612 (38%), Positives = 340/612 (55%), Gaps = 19/612 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R ++V+VIGGGHAG EAA  AAK  A  A++    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 14  RGWNVMVIGGGHAGLEAAWAAAKF-ARVAVLVSNPATVGRMPCNPAVGGPGKSQLVFEVQ 72

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L    +DV++GE
Sbjct: 73  ALGGLMGRLADDTAIHTRVLNASKGPAVQSLRVQNERDAYAERAQEILLGHSGIDVVRGE 132

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D       +VV+  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 133 AADLEPDGCGGWFVVTTDGRRFHARSVVVAAGTFMRGVTWYGRYSRPEGRQGEPPSRFLS 192

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +      R KTGTP R+   ++ +    +  AD +   F+               T
Sbjct: 193 APLARAGHRLKRYKTGTPPRVRADSVRFADLLEIPADPQPRGFTGRPGPRAAES-PTWQT 251

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I EN+  S +Y+GDI   GPRYCPSIEDK+VRF   + H +F+EP+G+ T 
Sbjct: 252 HTTPETHRLIQENLHESPMYAGDIAGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVQTS 311

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G S++LP  +Q + +R++PG E   I R  YA+EYD ++  EL   LE++ + G+
Sbjct: 312 EVYLQGFSSSLPPALQDRLVRSLPGFEAAVIQRYAYAVEYDVVDSTELTLNLESRLLPGI 371

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAG  +AR++ +L+ +  SR  SY+GV++DDL  KG  EP
Sbjct: 372 FTAGQINGTSGYEEAAAQGLVAGTAAARRALELEELQISRETSYLGVLLDDLVLKGSDEP 431

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR E+R+ +R DNAD RLT +G+KLG + E  Q+      +        L+   +
Sbjct: 432 YRMMTSRVEHRLIVRQDNADERLTELGVKLGLVDEDTQRAVQAKYRRVAEGIRALQMQRV 491

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
                           + +T   +L  P+F+++++ ++       S    E + I   YA
Sbjct: 492 ----------------QGQTGDAWLRRPEFALEDVEALGFKLPALSPEEREAVAIRVKYA 535

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  R   +        +  +     +  + +LSNE +EKL  ++P  + QA+ I G+  
Sbjct: 536 GYIERAERQLAAEDRARELSLR-GVAFGEIASLSNEAREKLERVRPLTVAQAAGIPGVRH 594

Query: 604 AALNLLLIYIKK 615
           A ++ LL+++++
Sbjct: 595 ADISALLVHLRR 606


>gi|205831542|sp|Q1IVV5|MNMG_DEIGD RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
          Length = 602

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/612 (38%), Positives = 340/612 (55%), Gaps = 19/612 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R ++V+VIGGGHAG EAA  AAK  A  A++    +T+G M CNPA+GG GK  LV E+ 
Sbjct: 2   RGWNVMVIGGGHAGLEAAWAAAKF-ARVAVLVSNPATVGRMPCNPAVGGPGKSQLVFEVQ 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L    +DV++GE
Sbjct: 61  ALGGLMGRLADDTAIHTRVLNASKGPAVQSLRVQNERDAYAERAQEILLGHSGIDVVRGE 120

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
            A    +      +V  D       +VV+  GTF+RGV   G+   P GR G+ PS  L 
Sbjct: 121 AADLEPDGCGGWFVVTTDGRRFHARSVVVAAGTFMRGVTWYGRYSRPEGRQGEPPSRFLS 180

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
               +      R KTGTP R+   ++ +    +  AD +   F+               T
Sbjct: 181 APLARAGHRLKRYKTGTPPRVRADSVRFADLLEIPADPQPRGFTGRPGPRAAES-PTWQT 239

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T  ETHR+I EN+  S +Y+GDI   GPRYCPSIEDK+VRF   + H +F+EP+G+ T 
Sbjct: 240 HTTPETHRLIQENLHESPMYAGDIAGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVQTS 299

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VY  G S++LP  +Q + +R++PG E   I R  YA+EYD ++  EL   LE++ + G+
Sbjct: 300 EVYLQGFSSSLPPALQDRLVRSLPGFEAAVIQRYAYAVEYDVVDSTELTLNLESRLLPGI 359

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGT+GYEEAAAQGLVAG  +AR++ +L+ +  SR  SY+GV++DDL  KG  EP
Sbjct: 360 FTAGQINGTSGYEEAAAQGLVAGTAAARRALELEELQISRETSYLGVLLDDLVLKGSDEP 419

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRM TSR E+R+ +R DNAD RLT +G+KLG + E  Q+      +        L+   +
Sbjct: 420 YRMMTSRVEHRLIVRQDNADERLTELGVKLGLVDEDTQRAVQAKYRRVAEGIRALQMQRV 479

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
                           + +T   +L  P+F+++++ ++       S    E + I   YA
Sbjct: 480 ----------------QGQTGDAWLRRPEFALEDVEALGFKLPALSPEEREAVAIRVKYA 523

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  R   +        +  +     +  + +LSNE +EKL  ++P  + QA+ I G+  
Sbjct: 524 GYIERAERQLAAEDRARELSLR-GVAFGEIASLSNEAREKLERVRPLTVAQAAGIPGVRH 582

Query: 604 AALNLLLIYIKK 615
           A ++ LL+++++
Sbjct: 583 ADISALLVHLRR 594


>gi|12045240|ref|NP_073051.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma genitalium G37]
 gi|1346131|sp|P47619|MNMG_MYCGE RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|3844967|gb|AAC71606.1| glucose-inhibited division protein A [Mycoplasma genitalium G37]
 gi|166078798|gb|ABY79416.1| glucose-inhibited division protein A [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 612

 Score =  574 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 223/612 (36%), Positives = 339/612 (55%), Gaps = 6/612 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+ + VIG GHAG EAA + +K      L+    + +GS  CNP+IGG  KG + REID 
Sbjct: 2   SFIITVIGAGHAGLEAAFIVSKFNIKVNLLVLDINHLGSCPCNPSIGGPAKGIVTREIDV 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G+    AD   +Q+++LN  KGPAV+  R Q D+  Y+   Q ++   +N+++IQ E 
Sbjct: 62  LGGMQAIAADNNALQYKLLNSSKGPAVQAIRAQIDKIGYKNWFQSQVKLNKNINLIQSEA 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I  ++++D S +    V++TTGT+LR   + G      G      S  L  
Sbjct: 122 INLIVRNEKIKGVILKDGSELLSDAVIITTGTYLRSKTYCGNTVKNQGPDQSKNSEKLST 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGI 242
           + +   F T RLKTGTP R+   ++ +++ E +  + + + FS          +QI C +
Sbjct: 182 NLINRGFKTIRLKTGTPPRILKTSLDYNQMELEINNNQNLAFSTTNKNFLPLEKQIPCYL 241

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
             TN + H +I++N+K SA+++G I + GP YCPSIEDK+ +F ++  HQIF+EPE L+ 
Sbjct: 242 VHTNQKIHDLILKNLKKSAMFNGSISAQGPLYCPSIEDKVFKFSQKPRHQIFVEPESLSL 301

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST+   EIQ + I+ +PG +   I + GYAIEYD     +L PTLETK I  
Sbjct: 302 DTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIEN 361

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L+ AGQINGT+GYEEAA QGL+AGIN+A K  K       R ++YIGVMI+DL +K + +
Sbjct: 362 LYFAGQINGTSGYEEAAGQGLMAGINAALKLLKKPPFILQRNEAYIGVMINDLVTKTISD 421

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
           PYR+ TSRAEYR+ LR DN   RL     +LG   ++  + F K  ++   L S LK+  
Sbjct: 422 PYRLLTSRAEYRLWLRNDNVQERLIKKSFELGLTDKKTYELFLKKEKKKQELISFLKNTQ 481

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY 542
           +        ++ F      ++ Y+F    + ++  L    P+  +  S  +++++IE  Y
Sbjct: 482 VG----KVKALKFTNKNTAQSLYDFNKRSEINLDKLIKDLPEKYQLDSETLKQIEIEIKY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  +     K +    K  IP  FDY  +  L++E   KLS  KP NL  AS+I G+ 
Sbjct: 538 EGYIKKNEKYFKGLDKLSKIKIPHTFDYHKVKNLASEAIFKLSNFKPSNLAIASQIAGVN 597

Query: 603 PAALNLLLIYIK 614
              +  +  ++K
Sbjct: 598 FNDIIAIKHFLK 609


>gi|254230609|ref|ZP_04923968.1| glucose inhibited division protein A, putative [Vibrio sp. Ex25]
 gi|151936869|gb|EDN55768.1| glucose inhibited division protein A, putative [Vibrio sp. Ex25]
          Length = 451

 Score =  574 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 194/444 (43%), Positives = 272/444 (61%), Gaps = 5/444 (1%)

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQI 238
            +L +   +  F   RLKTGTP R+D +T+ +   E Q  D     FSFM  +  + RQI
Sbjct: 1   IALADRLRELPFRVDRLKTGTPPRIDARTVDFSVLEAQHGDNPTPVFSFMGKREQHPRQI 60

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPE
Sbjct: 61  PCFITHTNEQTHDVIRSNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPE 120

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK
Sbjct: 121 GLTTHELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETK 180

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            I GLF AGQINGTTGYEEAAAQGL+AG+N++  S   +     R  +Y+GV+IDDL++ 
Sbjct: 181 FIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTM 240

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT    +LG I   R  RF + +      R  L
Sbjct: 241 GTKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLIDNVRWARFNEKLNNMETERQRL 300

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +  K+     ++        +  +  + L  P+ +   L  +   A         E
Sbjct: 301 KSTWMNPKSEGVDELNKLLKTPMAREASGEDLLRRPEITYSQLTQLEAFAPALEDQQAAE 360

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E   +P D DY  +  LSNE+  KLS  KP ++  
Sbjct: 361 QVEIQVKYDGYIKRQQEEIEKSLRHENTKLPADLDYRDVKGLSNEVVAKLSEAKPESIGI 420

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK+ +
Sbjct: 421 ASRISGITPAAISILLVHLKKHGL 444


>gi|260890748|ref|ZP_05902011.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia hofstadii F0254]
 gi|260859301|gb|EEX73801.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Leptotrichia hofstadii F0254]
          Length = 488

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 222/486 (45%), Positives = 311/486 (63%), Gaps = 16/486 (3%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R+YDVIV+G GHAG EAA  +A+LG +TA+ T     IG MSCNP++GG  K HL +E+D
Sbjct: 2   RNYDVIVVGAGHAGIEAALASARLGLNTAIFTITLDNIGVMSCNPSVGGPAKSHLAKEVD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y   M++ I +Q+NLD +Q  
Sbjct: 62  ALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIYAREMKKTIENQQNLDTVQDI 121

Query: 124 VAGFNTEK------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     E+             +I  I  +         VVL TGTFLRG+++IG  ++  
Sbjct: 122 VTELIVEEVEIFEDDSRRIEKVIKGIRTKTGMEFFAKAVVLATGTFLRGLLYIGDKRVKG 181

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER-LIPFSFMT 230
           GRMG+  ++ L +S     F   R KTGTP RLD +T+  +K E+Q       + FS  T
Sbjct: 182 GRMGELSADDLTDSLKSLGFKMDRFKTGTPPRLDIRTLNLEKLEEQPGITGIPLKFSMRT 241

Query: 231 ---DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +   Q+ C +TRTN  TH+II++N+  + +Y+G I S GPRYCPSIEDK+V+F +
Sbjct: 242 PNSEVLEKPQLSCYLTRTNETTHKIILDNLDKAPMYNGSISSTGPRYCPSIEDKVVKFND 301

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           ++ H +FLEPEG +T  VY +G+ST+ P  +Q + + TI GLE  +I+R GYA+EYD ++
Sbjct: 302 KDSHHLFLEPEGFDTAEVYISGLSTSYPASLQQKIVNTIDGLENAHIMRYGYAVEYDIVD 361

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P EL  TLET+K+ GL+LAGQ+NGT+GYEEAAAQG++AGIN+A K    +     R  SY
Sbjct: 362 PSELDYTLETRKVKGLYLAGQLNGTSGYEEAAAQGIIAGINAALKIRGEEPFILDRESSY 421

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG MIDDL +K + EPYRMFT+R+E+R+ LR DNAD RL+    K+G + ++      + 
Sbjct: 422 IGTMIDDLINKELFEPYRMFTARSEFRLILREDNADIRLSEKAYKIGLLDKKYYDIVQEK 481

Query: 468 IQEYNF 473
            +    
Sbjct: 482 KKMLRK 487


>gi|325284180|ref|YP_004256721.1| glucose inhibited division protein A [Deinococcus proteolyticus
           MRP]
 gi|324315989|gb|ADY27104.1| glucose inhibited division protein A [Deinococcus proteolyticus
           MRP]
          Length = 606

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/616 (39%), Positives = 341/616 (55%), Gaps = 19/616 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   ++VIVIGGGHAG EAA  AAK G   A++    +TIG M CNP++GG GK  LV E
Sbjct: 1   MKNRWNVIVIGGGHAGIEAAWAAAKFG-RAAMLVGNPATIGRMPCNPSVGGPGKSQLVFE 59

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           + AL GLM  +AD   I  RVLN  KGPAV+  R Q +R+LY    Q  +LS   LD+++
Sbjct: 60  LQALGGLMPTLADQTAIHTRVLNASKGPAVQSLRVQNERDLYATVAQDALLSVPELDILR 119

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           GE A   ++      +V  D       +VV+  GTF+RGV   G+     GR G+ PS  
Sbjct: 120 GEAADLESDGQGGWWVVTTDGRRFWGRSVVVAAGTFMRGVTWYGRQSRHEGRQGEPPSRY 179

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +  +      R KTGTP R+   ++ +       AD+    F+  T           
Sbjct: 180 LSAALEQGGHTLKRFKTGTPPRVRADSVRFGDLTVIPADQPARSFT-GTPGPHAEASPTW 238

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
            T T   THR++ ENI HSA+Y+GDI + G RYCPSIEDKI+RF   + H +F+EPEGL 
Sbjct: 239 QTHTTPLTHRLVAENIGHSAMYAGDIDALGARYCPSIEDKIMRFAHHDRHLLFVEPEGLE 298

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G S++LP E+Q   +RT+PG E+  I R  YA+EYD ++  EL   LE++++ 
Sbjct: 299 TSEVYLQGFSSSLPPELQDVLVRTLPGFEQAVIQRYAYAVEYDVVDSTELTMNLESRRLP 358

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           G++ AGQ+NGT+GYEEAA QGLVAG  +AR++  L    FSR D Y+GV++DDL  KG  
Sbjct: 359 GVYTAGQLNGTSGYEEAAMQGLVAGTAAARRAAGLSEETFSRADGYLGVLLDDLMLKGCD 418

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EP+RM TSR E+R+ +R DNAD RLTP+  +LG +G+ +        +        L   
Sbjct: 419 EPFRMMTSRVEHRLLVRQDNADERLTPLAQRLGLVGQVQLDAVQAKYRRVEAGMQALARQ 478

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L              DGK   A   L  P+ S+ +L +      + S    E ++I   
Sbjct: 479 RL--------------DGKP--AEVHLRRPEVSLVDLEAQGVQLPELSREEKEAVEIRVK 522

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           YA Y  R   +         RL     D++++P+LS E +EKL    P  + QAS+I+G+
Sbjct: 523 YAGYLDRARRQLDAEAK-AGRLSLSGVDFAAVPSLSLEGREKLLRHAPTTVEQASRIQGV 581

Query: 602 TPAALNLLLIYIKKNT 617
             A ++ LL+++K+  
Sbjct: 582 RHADISALLVHLKQRQ 597


>gi|219685822|ref|ZP_03540631.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
 gi|219672655|gb|EED29685.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
          Length = 493

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 223/495 (45%), Positives = 315/495 (63%), Gaps = 7/495 (1%)

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
           +N I  +V +  +  R S VVLTTGTFLRG I IG+ +   GR+ +  +  L  + +   
Sbjct: 2   RNEIKGVVTERGNKFRSSVVVLTTGTFLRGKIFIGEYRANMGRLAEFSAYGLDKTLLSLG 61

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETH 250
           F+ GRLKTGTPAR+  K++ + KTE QF D  +IPFSF    +   Q+ C +T TN  TH
Sbjct: 62  FEMGRLKTGTPARIHKKSVDFSKTEVQFGDSDIIPFSFSNGNLDKSQLSCYVTYTNKRTH 121

Query: 251 RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGI 310
            II EN+  S +YSG+I   GPRYCPSIEDKIV+F +++ HQIF+EPEG NT+ +Y NG+
Sbjct: 122 EIISENMHLSPLYSGEIVGNGPRYCPSIEDKIVKFKDKDRHQIFIEPEGFNTEEMYLNGL 181

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQIN 370
           S++LPE IQ +FI +I GLE   I RPGYA+EYDYINP EL+P LE+K++ GLF+AGQ N
Sbjct: 182 SSSLPENIQQKFINSIEGLEHAIITRPGYAVEYDYINPIELYPNLESKRVKGLFVAGQTN 241

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           G++GYEEAAAQGL+AGIN+A +      +  +RT SYIGV+IDDL +KG  EPYRMFTSR
Sbjct: 242 GSSGYEEAAAQGLMAGINAALRLQNKKPMILTRTSSYIGVLIDDLVTKGTKEPYRMFTSR 301

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
           AE+R++LR D +D RL  IG  LG + E R  ++    +    ++ LLK   L+ K+++ 
Sbjct: 302 AEHRLNLRHDTSDKRLIKIGYDLGLVDEERYSKYLFKKRRVEEIKELLKQRRLSLKDVAD 361

Query: 491 TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQM 550
             +   +   ++  Y  L  P  S+ NL  I P     S +++E+++++  Y  Y  RQ 
Sbjct: 362 EQL---KKHVSKDFYHILKDPSISLDNLIKIDPSLSD-SKVILEQVELDVKYEGYINRQK 417

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
              K++   E   +P DF+Y  +  LS E +EK S ++P  L QAS+I G+    + +L 
Sbjct: 418 DLIKKLNNLELVKLPFDFNYEIIEGLSREAREKFSKVQPATLAQASRIPGIRNTDITVLF 477

Query: 611 IYIKKNTVKLNEIVL 625
           IY    +   N++VL
Sbjct: 478 IYF---SNPKNKVVL 489


>gi|289668143|ref|ZP_06489218.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 477

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 288/473 (60%), Gaps = 5/473 (1%)

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT GTFL G IH+G+ +  AGRMGD P+ +L     +  F   RLKTGTP R+DG+T+ 
Sbjct: 1   MLTAGTFLAGKIHVGETQYAAGRMGDPPATTLAARLRERPFAIDRLKTGTPPRIDGRTLD 60

Query: 211 WDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +    +Q  D+ L   SFM     + RQ+ C IT+T  +TH II   +  S +YSG I+ 
Sbjct: 61  YSVMVEQPGDDPLPVMSFMGQVSDHPRQVSCWITQTTEQTHEIIRNALHRSPLYSGQIEG 120

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF E+  HQIF+EPEGL    +YPNGIST+LP ++Q   +R+I G 
Sbjct: 121 IGPRYCPSIEDKVVRFAEKTSHQIFVEPEGLEVAEIYPNGISTSLPFDVQLALVRSIHGF 180

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            +  I RPGYAIEYD+ +P+ L  +LETK + GLF AGQINGTTGYEEAAAQGL+AG+N+
Sbjct: 181 AQAYITRPGYAIEYDFFDPRGLKASLETKAVGGLFFAGQINGTTGYEEAAAQGLLAGLNA 240

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR    L      R ++Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +
Sbjct: 241 ARHVQGLPAWSPRRDEAYLGVLVDDLITHGTTEPYRMFTSRAEYRLQLREDNADARLTGV 300

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYE 506
           G ++G + + R  RF+   +      + L +L  T  N     ++        +     +
Sbjct: 301 GHEMGLVDDARWARFSAKQEAVQRETARLSTLWATPGNALGREVADALGVTVSRETNVLD 360

Query: 507 FLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            +  P+ +   L  +           V E+++I   YA Y  RQ  +    +  E   IP
Sbjct: 361 LIKRPELNYVTLMRVPTLGPGVDDAQVAEQVEISVKYAGYLDRQRDDIARQQRHETTPIP 420

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
             FDY+ +  LS E+++KL  ++P ++ QA +I GMTPAA++LLL+++++   
Sbjct: 421 DGFDYAVVRGLSIEVQQKLERVRPQHIGQAQRIPGMTPAAISLLLVHLERARR 473


>gi|300121848|emb|CBK22422.2| Glucose-inhibited division protein A [Blastocystis hominis]
          Length = 684

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/636 (41%), Positives = 360/636 (56%), Gaps = 46/636 (7%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G  TAL+T   STIG MSCNP++GG+GKGHL+REIDALDGL+GR+ D  GIQFRVLN 
Sbjct: 55  RMGVKTALVTTNFSTIGEMSCNPSMGGIGKGHLIREIDALDGLIGRMTDYGGIQFRVLNA 114

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA--------------GFNTEK 131
            +GPAV GPR Q DR+LY+  MQ+ I +  NL VI+                    +   
Sbjct: 115 SRGPAVHGPRAQVDRDLYKKHMQQAIRNYPNLTVIEDGAHVPLPFSASSHPQEFEMDASN 174

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG------DSPSNSLFNS 185
             I  +V +    I CS VVL TGTFL GV HIGK  +PAGR        D PS  L + 
Sbjct: 175 KTIHGVVTRKGQHIHCSAVVLCTGTFLHGVCHIGKWNVPAGRFHRDTLNVDPPSIHLADF 234

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT----DKITN--RQIE 239
                    R  TGTP RL   +I W +   Q +D   +P SF+     D I N  R + 
Sbjct: 235 LHSLHLPIERFTTGTPPRLHRDSIDWSRLATQASDAPAVPLSFLNIYAGDFIPNQSRLLR 294

Query: 240 CGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           C  T TN ETH I   +      +     K  GPRYCPSIE K++RF E+  H I+LEPE
Sbjct: 295 CATTYTNEETHAICNAHRGELPSFTGNRGKGQGPRYCPSIEKKVLRFPEKKRHLIWLEPE 354

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETK 358
           GL T VVYPNG++TA   E Q + +RT+ GLE V+++RPGYA+EYDY++P  L P    +
Sbjct: 355 GLETPVVYPNGLATAYDAETQLKLLRTMRGLEHVDMLRPGYAVEYDYVDPAVLTPAFRLR 414

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            ++ LFLAGQINGTTGYEEAAAQG++AGIN+AR+      +   R+ + IGV+ DDLT  
Sbjct: 415 LLANLFLAGQINGTTGYEEAAAQGIMAGINAARQVMGKPAVILERSRAMIGVLTDDLTRG 474

Query: 419 G-----VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           G       EP+RMFTSR+EYRI++R DNAD RLT  G + G +GE R  +F +  +E   
Sbjct: 475 GYRTDLTREPFRMFTSRSEYRITVRADNADLRLTEWGYQEGIVGEERYAKFMEKKEELLK 534

Query: 474 LRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD------ARK 527
               LK+  L+S+           + K  +A++ ++YP  SI+ +  I  +         
Sbjct: 535 CNEFLKAYRLSSEEW-----GLPGEHKYISAFDAMAYPKISIKTVEDIIRNKQGDTVLNH 589

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +  V + L I + Y  Y  +Q  +           IP++FD+S+LP +S E K+KL   
Sbjct: 590 TTRGVKQTLYITAKYGVYLEKQKKDIDLFNRSNGLKIPENFDFSALP-ISQEEKDKLMDT 648

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK--NTVKLN 621
           KP ++ +   I G+ P+    ++  I+K  N V+ N
Sbjct: 649 KPSSIEEVKHILGIKPSTFLFIIKAIRKSGNEVEQN 684


>gi|325916837|ref|ZP_08179088.1| glucose-inhibited division protein A [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536988|gb|EGD08733.1| glucose-inhibited division protein A [Xanthomonas vesicatoria ATCC
           35937]
          Length = 477

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 290/473 (61%), Gaps = 5/473 (1%)

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           +LT GTFL G IH+G+ +  AGRMGD P+ +L     +  F   RLKTGTP R+DG+++ 
Sbjct: 1   MLTAGTFLAGKIHVGETQYAAGRMGDPPATTLAARLRERPFAIDRLKTGTPPRIDGRSLD 60

Query: 211 WDKTEKQFADERLIPFSFMTDK-ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           +    +Q  D+ L   SFM       RQ+ C IT+T  +TH II   +  S +YSG I+ 
Sbjct: 61  YGVMVEQPGDDPLPVMSFMGQVGDHPRQVSCWITQTTEQTHDIIRNALHRSPLYSGQIEG 120

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
            GPRYCPSIEDK+VRF E+  HQIF+EPEGL    +YPNGIST+LP ++Q   +R+I G 
Sbjct: 121 IGPRYCPSIEDKVVRFAEKTSHQIFVEPEGLEVTEIYPNGISTSLPFDVQLALVRSIHGF 180

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
            + +I RPGYAIEYD+ +P+ L  +LETK + GLF AGQINGTTGYEEAAAQGL+AG+N+
Sbjct: 181 AQAHITRPGYAIEYDFFDPRGLKASLETKAVGGLFFAGQINGTTGYEEAAAQGLLAGLNA 240

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR    L      R ++Y+GV++DDL + G  EPYRMFTSRAEYR+ LR DNAD RLT +
Sbjct: 241 ARHVQGLPAWSPRRDEAYLGVLVDDLITHGTTEPYRMFTSRAEYRLQLREDNADARLTGV 300

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYE 506
           G  +G + + R  RF+   ++     + L +L  T  N      T        +     +
Sbjct: 301 GRAMGLVDDLRWARFSAKQEQVQRETTRLSALWATPGNALGREVTQTLGVSLSRETNVLD 360

Query: 507 FLSYPDFSIQNLFSICPDARKFSS-LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            +  P+ +   L  +           V E+++I   YA Y  RQ  +    + +E   IP
Sbjct: 361 LIKRPELNYAALMRVPTLGPGVDDTQVAEQVEISVKYAGYLDRQRDDIARQQRQETTPIP 420

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           + FDY+++  LS E+++KL  ++P ++ QA +I GMTPAA++LLL+++++   
Sbjct: 421 EGFDYANVRGLSIEVQQKLERVRPQHIGQAQRIPGMTPAAISLLLVHLERARR 473


>gi|320335882|ref|YP_004172593.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Deinococcus maricopensis DSM 21211]
 gi|319757171|gb|ADV68928.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Deinococcus maricopensis DSM 21211]
          Length = 612

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/614 (38%), Positives = 343/614 (55%), Gaps = 19/614 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +++V+VIGGGHAG EAA  AAK  A TAL+    +T+G M CNPA+GG GK  +V E+ A
Sbjct: 9   TWNVLVIGGGHAGIEAAWAAAKY-ARTALMISNPATLGRMPCNPAVGGPGKSQIVFELTA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + GLMGR+AD   I  RVLN  KGPAV+  R Q +R+ Y    Q  +L   N+D+++ E 
Sbjct: 68  MGGLMGRLADETAIHTRVLNASKGPAVQSLRVQNERDAYAERAQDVMLGHPNVDILRAEA 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A   ++      +V  D       +VV+  GTF+RGV   G+   P GR G+ P+  L  
Sbjct: 128 ADLESDGRGGWFVVSTDGRRFHARSVVIAAGTFMRGVTWYGRQSRPEGRQGEPPARFLSA 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +      R KTGTP R+    + ++  E   AD +   F+        +      T 
Sbjct: 188 PLARGGHALKRYKTGTPPRVRADAVDFEALEVIPADPQPRGFTGRPGPRAAQS-PTWQTH 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  ETHR+I EN+  S +Y+GDI+  GPRYCPSIEDK+VRF   + H +F+EP+G+ T  
Sbjct: 247 TTPETHRLINENLHESPMYAGDIEGLGPRYCPSIEDKVVRFAHHDRHLLFVEPDGVETSE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VY  G S++LP  +Q Q +RT+PG E+  I R  YA+EYD ++  EL   LE+++++G++
Sbjct: 307 VYLQGFSSSLPPALQDQLVRTLPGFERAVIQRYAYAVEYDVVDSTELTLNLESRRLAGVY 366

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQINGT+GYEEAAAQGLVAG  +AR++  L     SR   YIGVM+DDL+ KG  EPY
Sbjct: 367 TAGQINGTSGYEEAAAQGLVAGAAAARRALGLGEEIVSRETGYIGVMLDDLSFKGSDEPY 426

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RM TSR E+R+ +R DNAD R+TP+   LG +    + R            + L +  + 
Sbjct: 427 RMMTSRVEHRLLVRQDNADERMTPLAHALGLVDAEERARVQTKYGRIAEAEAQLAAQRV- 485

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                        +G   TAY  L  P+F + +L ++       S+   E L+I   YA 
Sbjct: 486 -------------NGTDGTAY--LRRPEFGLSDLDALGFTLPLLSAEEREALEIRVKYAG 530

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
           Y  R   +           +    DY+ +P+LS E +EKL+  +P  L QAS++ G+  +
Sbjct: 531 YIDRARRQLASEAKARDLAL-TGVDYARVPSLSQEAREKLTRAQPLTLDQASRVPGVRHS 589

Query: 605 ALNLLLIYIKKNTV 618
            +  LL+++++   
Sbjct: 590 DITSLLVHLRQQGA 603


>gi|312377446|gb|EFR24275.1| hypothetical protein AND_11231 [Anopheles darlingi]
          Length = 556

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/557 (43%), Positives = 357/557 (64%), Gaps = 16/557 (2%)

Query: 27  LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
           +GA T L+THK STIG MSCNP+ GG+GKGHL+RE+DALDG+ GR  D +G+Q++VLN +
Sbjct: 1   MGARTLLVTHKRSTIGEMSCNPSFGGIGKGHLLREVDALDGVCGRCCDRSGVQYKVLNRR 60

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN----TEKNIISSIVMQDN 142
           KGPAV GPR Q DR LY+  +Q+E+    NL +I+  V   +        +++ + + + 
Sbjct: 61  KGPAVWGPRAQIDRVLYKREVQQELARTPNLTIIEASVEDIDHVHDDHGAVLTGVKLANG 120

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
             +  +++V+TTGTFLRG I+IG    PAGR+GD P+  L  S  +  F  GRLKTGTP 
Sbjct: 121 QTVTTTSLVITTGTFLRGQINIGLDTRPAGRIGDEPAIGLAKSIEQLGFRLGRLKTGTPP 180

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKH 259
           R+   +I ++   +   D+  +PFSF+ D++    ++Q++C +T+T    + I+  N+  
Sbjct: 181 RIHRDSIRFEVLARNPGDDPPVPFSFLNDRVWLDADQQLDCFLTQTTPAVNEIVKRNLHC 240

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           +   + ++   GPRYCPSIE K++RFG +  HQI+LEPEG ++D++YPNG+S  LPEE Q
Sbjct: 241 NRHVTEEL--TGPRYCPSIESKVLRFGHK-LHQIWLEPEGFDSDLIYPNGLSCTLPEEEQ 297

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
            Q +R + GLEK  ++RPGY +EYD+++P+EL+PTLETK++ GLFLAGQINGTTGYEEAA
Sbjct: 298 VQLVRCLFGLEKAEVVRPGYGVEYDFVDPRELYPTLETKRVRGLFLAGQINGTTGYEEAA 357

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           AQGL+AG N+A K+     +  SRT++Y+GV++DDLT+ G  EPYRMFTSRAE+R+SLRP
Sbjct: 358 AQGLLAGANAAAKALSKPPLTISRTEAYLGVLVDDLTTLGTNEPYRMFTSRAEFRLSLRP 417

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST-SISFKQD 498
           DNAD RLT  G  +G + E R +R     +       +L+ +   S    +   +   + 
Sbjct: 418 DNADLRLTEKGYAIGLVSEERYRRTISIRERIAKAMEVLREIRKGSNQWKAAMDLPAAKA 477

Query: 499 GKTRTAYEFLSYP--DFSIQNLFSICPDARKF---SSLVIERLQIESSYAAYTGRQMIEA 553
              ++A+E L+    D + + L +  PD   +      +  RL+IE+ YA     Q  E 
Sbjct: 478 SIFKSAFEMLAISTDDITTERLCATEPDTFGWIRDDPELCRRLKIEALYALSIADQSREV 537

Query: 554 KEIKFEEKRLIPKDFDY 570
            E++  E   IP   DY
Sbjct: 538 DEVQRNEALRIPDTIDY 554


>gi|148555755|ref|YP_001263337.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Sphingomonas wittichii RW1]
 gi|205831558|sp|A5VA83|MNMG_SPHWW RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|148500945|gb|ABQ69199.1| glucose inhibited division protein A [Sphingomonas wittichii RW1]
          Length = 619

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 256/585 (43%), Positives = 354/585 (60%), Gaps = 2/585 (0%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L++ +   IG+MSCNPAIGGLGKGHLVRE+DA DGL+ R AD A I +R+LN  KG AV+
Sbjct: 32  LVSMRRDMIGAMSCNPAIGGLGKGHLVREVDACDGLIARAADRAAIHYRMLNSSKGAAVQ 91

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTV 150
           GPR QADR+LY+ A+   +    +L++++G       +      S +V+ D   ++   V
Sbjct: 92  GPRVQADRKLYKAAIHDLLAELPSLEIVEGSAERLLLDDVSRGTSGLVLADGRELKAGAV 151

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           VL TGTFL   +H G      GR+G++ +  L       D    RLKTGTP RLDG+TI 
Sbjct: 152 VLATGTFLNARLHFGMDCRTGGRVGEAAAVGLAEQLRALDLPIARLKTGTPPRLDGRTID 211

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           W + ++Q +D     FS +T      Q+ C ITRTN  TH +I   +  S ++SG I   
Sbjct: 212 WARLDRQPSDGEGWTFSALTPHRLVPQLACAITRTNQRTHDVIRAGLDRSPLFSGAITGV 271

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPSIEDK+ RFG+R+GHQIFLEPEGL+   VYPNG+ST+LPE++Q   +RT+PGLE
Sbjct: 272 GPRYCPSIEDKVHRFGDRDGHQIFLEPEGLDDPTVYPNGVSTSLPEDVQLAMLRTVPGLE 331

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           +V I++PGYA+EYDYI+P+ L   L  + + GLF AGQINGTTGYEEAAAQGL AG+N+A
Sbjct: 332 RVEILQPGYAVEYDYIDPRALTAGLALRALPGLFCAGQINGTTGYEEAAAQGLAAGMNAA 391

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
             +     I F R  SYIGVMIDDLT +GV EPYRM T+RAEYR+ LR DNA  RLT   
Sbjct: 392 AFAAGRPEIHFDRATSYIGVMIDDLTLQGVSEPYRMLTARAEYRLRLRADNAGTRLTSWA 451

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
              G I   R+    +       +   L   +  S  L +   +   D   R+  E+L +
Sbjct: 452 DAHGAISAARRMFHVEREARRIAMADCLDRRIAGSAELIAAGAAVAADHARRSLTEWLRF 511

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           P+     L  + P+       V   +  +  YA Y  RQ  E   ++ +E+  +    DY
Sbjct: 512 PEVGDAELTVLAPELVDVPEDVRAEVIQDGRYAPYLARQDQEIARLRADERIGLAVIVDY 571

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++  LSNE+ E+L+  +P +L  A ++ G+TPAAL  ++++ ++
Sbjct: 572 GAIAGLSNEMVERLNAARPADLAAAGRVRGVTPAALAAIMVHARR 616


>gi|321311053|ref|YP_004193382.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Mycoplasma haemofelis str. Langford 1]
 gi|319802897|emb|CBY93543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Mycoplasma haemofelis str. Langford 1]
          Length = 618

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/615 (37%), Positives = 338/615 (54%), Gaps = 13/615 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           IN+ +DV VIG GHAG EAA +A+K     AL      +I ++ CNP+IGG  KG + RE
Sbjct: 3   INKEFDVAVIGAGHAGLEAAFIASKFNLRVALFNLNKESIANLPCNPSIGGPAKGVVTRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL G+    AD   IQ + LN  KGP V   R Q D+E +     ++I    N++++ 
Sbjct: 63  IDALGGIQAIAADENKIQIKKLNQSKGPGVWAYRAQIDKETFHDWFIKKIEDDPNIELLL 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV     E + +  +   +  + RC T+++TTGT+L+  ++  K    +G   +  SN 
Sbjct: 123 EEVVELLKEGDEVKGLRTVNG-IYRCKTLIVTTGTYLKAELYREKKFADSGPDNNPASNF 181

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIE 239
           L ++F  +  +  RLKTGTP R+   +I + + E   +++  I FSF   K      Q+ 
Sbjct: 182 LSDTFRNWGIELLRLKTGTPPRVYLDSIDFSQLEVDDSNDGNISFSFREPKKLPLEEQMH 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +  T   T + ++ +++    Y+G I   GPRYCPSIEDK V+F  R  H IF+EP  
Sbjct: 242 CYLAETTPLTKKFVLHHLEECGTYNGSICGTGPRYCPSIEDKYVKFPNREKHFIFVEPIA 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
            N D  Y  G+ST+L +++Q + +RTI G + V I +  YAI YD INP +L  TLE KK
Sbjct: 302 RNYDYCYLAGLSTSLNKDLQEKLLRTIKGFQNVRIKKHAYAIVYDAINPIQLLKTLECKK 361

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQINGT+GYEEAAAQGL+AGIN++ K    +     R ++YIGVMIDDLT++G
Sbjct: 362 VKNLFFAGQINGTSGYEEAAAQGLIAGINASLKVLNREPFILRRDEAYIGVMIDDLTTRG 421

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           V EPYR+ TSRAE+R+ LR DNAD RL  +G +LG I E   + F K  ++ NF    LK
Sbjct: 422 VTEPYRLLTSRAEHRLLLRNDNADERLLGLGRELGTIEESFYRDFLKVQEDINFNIDFLK 481

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQI 538
                +  L+  ++         T + +L+  + S   L  I     R  S    E+L I
Sbjct: 482 KNYAATYRLAEGNL---------TLFSWLARGENSYSELSEILGSKLRSLSVEAQEKLMI 532

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKI 598
           +  Y  Y   Q      ++   K  + K  DYS +  LS E +E+L+  +P  +  A KI
Sbjct: 533 KVKYEGYIRAQETRINRLEKWRKLSLLKIKDYSDIQNLSREARERLNSERPITVDDALKI 592

Query: 599 EGMTPAALNLLLIYI 613
            G+    +  +  Y+
Sbjct: 593 SGININDIFWIKAYL 607


>gi|153870744|ref|ZP_02000079.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Beggiatoa sp. PS]
 gi|152072791|gb|EDN69922.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
           [Beggiatoa sp. PS]
          Length = 439

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 196/430 (45%), Positives = 277/430 (64%), Gaps = 3/430 (0%)

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNL 247
                 RLKTGTP RLD +++ +   + Q  D+ +  FSF  +   + RQI C ITRTN 
Sbjct: 1   MPLRVDRLKTGTPPRLDSQSLDYSVMQLQPGDDPVPIFSFQGNPSQHPRQISCYITRTNE 60

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +TH II   ++ S +Y+G I+  GPRYCPSIEDKIVRF ++N HQIF+EPEGL T  VYP
Sbjct: 61  KTHEIIRSGLERSPMYTGVIEGIGPRYCPSIEDKIVRFADKNSHQIFVEPEGLETFEVYP 120

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NGIST+LP +IQ   +R+I G EK +I R GYAIEYD+ +P++L P+LETK I GLF AG
Sbjct: 121 NGISTSLPFDIQLALVRSITGFEKAHITRAGYAIEYDFFDPRDLQPSLETKVIKGLFFAG 180

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL+AG+N+AR+          R ++Y+GV+IDDL ++G  EPYRMF
Sbjct: 181 QINGTTGYEEAAAQGLIAGLNAARQVQGKPPWTPRRDEAYVGVLIDDLITRGTNEPYRMF 240

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSRAEYR+ LR DNAD RLT IG +LG +G+ R + F    +     +  L+ + +   +
Sbjct: 241 TSRAEYRLLLREDNADLRLTEIGRELGLVGDTRWRSFETKKEAIETEKQRLRQIWIRPTD 300

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKFSSLVIERLQIESSYAAYT 546
            ++  +      +     + L  PD S ++L  + P      ++ V+++++I+  Y+ Y 
Sbjct: 301 PATAQLKT-TINREINCLDILRRPDVSYEDLLIMPPVATHTVAAEVMQQVEIQQKYSGYI 359

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
            RQ  E   ++  E   +P D DY+ +  LS E+ +KL   +P ++ QAS+I G+TPAA+
Sbjct: 360 ERQQTEIARLRRYETASLPTDMDYTQVKGLSAEVCQKLMAHRPTSVGQASRIPGVTPAAI 419

Query: 607 NLLLIYIKKN 616
           +LLL+Y KK 
Sbjct: 420 SLLLVYFKKR 429


>gi|145347494|ref|XP_001418199.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578428|gb|ABO96492.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 608

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/608 (43%), Positives = 346/608 (56%), Gaps = 44/608 (7%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGGLGKG L RE+DALDGLM R AD  GIQFR+LN  KGPAVRG R Q DRELY
Sbjct: 1   MSCNPSIGGLGKGTLAREVDALDGLMARAADGGGIQFRMLNSSKGPAVRGARAQMDRELY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTF 157
           +  +QR + +   LDV+   V   + +        ++  +V+ +   +R  +VV+TTGTF
Sbjct: 61  KGEIQRLVSAVGGLDVVDAAVVDLDIDHASDGSRGVMRGVVLDNGRTLRAKSVVITTGTF 120

Query: 158 LRGVIHIGKLKIPAGRMGD-----------SPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
           L GV+HIG  ++ AGR+ +             ++SL  +     F  GR+KTGTP RLDG
Sbjct: 121 LNGVLHIGSKRVVAGRLANDTTQQADLKAGEAAHSLARTLYGIGFKMGRMKTGTPPRLDG 180

Query: 207 KTIIWDKTEKQFADERLIPFSFMTD---------KITNRQIECGITRTNLETHRIIMENI 257
           KTI W     Q  D   +PF+F +          K   RQI C  T T  ET + I    
Sbjct: 181 KTIDWSACAPQPGDAVPVPFAFTSSSRPVHAEAWKPPARQIMCHSTYTTSETEKYIAAAP 240

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
           K             PRYCPSIE K+ RF  R  H+I+LEPEGLNTDVVYPNGI+  L  E
Sbjct: 241 KSKYELDDVESPTTPRYCPSIESKVRRFPGRT-HRIWLEPEGLNTDVVYPNGITNNLEPE 299

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           +Q + +RTIPGLE   I+ PGY +EYDY++P+EL  TLETK+I GLFLAGQINGTTGYEE
Sbjct: 300 LQKEMVRTIPGLENAVILSPGYGVEYDYVDPRELRITLETKRIQGLFLAGQINGTTGYEE 359

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AAAQG++AG N+A      +     R  SY+GV++DDLTS+G  EPYRMF+SR EYR+S+
Sbjct: 360 AAAQGVIAGANAAS--VDGEEFVVPRYSSYLGVLVDDLTSRGTSEPYRMFSSRVEYRLSI 417

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS--ISF 495
           R DNAD RLT +G + G +   R +  A+           L ++ L      + +  +  
Sbjct: 418 RSDNADLRLTELGERYGVVSAERARAAARRRTLVEQAGGALDAITLIPSRWQAYAPDLPI 477

Query: 496 KQDGKTRTAYEFL-------SYPDFSIQNLFSICPDARKF------SSLVIERLQIESSY 542
            + G+  +A   L                L  + P  R             E   IE+ Y
Sbjct: 478 AKHGRHLSASNMLAQGWDVDKILRVVADVLGPLDPHVRALRSVNEEDRSAFECAAIEAYY 537

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  +  +++ EE+  IP+ FDYS++  LS E +EKL  ++P    +AS+I G+T
Sbjct: 538 KPYIERQAQDIDDMRREEELAIPETFDYSAIDNLSLEDREKLEAVRPTTFARASRISGVT 597

Query: 603 PAALNLLL 610
           PAAL  LL
Sbjct: 598 PAALLSLL 605


>gi|307109991|gb|EFN58228.1| hypothetical protein CHLNCDRAFT_20360 [Chlorella variabilis]
          Length = 705

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/637 (41%), Positives = 354/637 (55%), Gaps = 56/637 (8%)

Query: 31  TALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           T L+T   S +IG MSCNP+IGG+ KG LVRE+DALDGLM R ADAAGIQFR+LN  KGP
Sbjct: 41  TLLVTPSPSASIGEMSCNPSIGGVAKGTLVREVDALDGLMARAADAAGIQFRMLNASKGP 100

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV--------MQD 141
           AVRGPR Q DR LY+ A+QR +     L +  G V     E                +  
Sbjct: 101 AVRGPRAQMDRVLYKWAVQRMLGGVPGLAIHDGAVVDLLVEPRPSGGGPGPVVAGVVLAS 160

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD------------------------- 176
              I C +VV+TTGTFLRGVIH+G    PAGR+                           
Sbjct: 161 GERILCRSVVVTTGTFLRGVIHVGSHSRPAGRIASLTSAREASRPEAAREAELTDEADVT 220

Query: 177 --SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT---D 231
               +  L   F    F  GRLKTGTP RLDG+TI W   E+Q  D    PFSF+     
Sbjct: 221 AAGAATRLARRFADLGFALGRLKTGTPPRLDGRTIDWSVCEEQPGDGAPTPFSFLHLQQP 280

Query: 232 KITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG----PRYCPSIEDKIVRF 285
             +    Q+ C  TRT   +  ++++ +       G   + G    PRYCPS+E K  RF
Sbjct: 281 GWSPPAGQVSCFGTRTTAASEALVLDCMASGERRDGMTVAQGGCVEPRYCPSLETKFRRF 340

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
             R  H ++LEPEGL TDVVYPNGIS ++  E Q + ++TIPGL    ++ P YA+EYDY
Sbjct: 341 PGRT-HHVWLEPEGLGTDVVYPNGISNSMEPEDQLRLLQTIPGLGAARMLAPAYAVEYDY 399

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           ++P+EL PTLET+++ GL+LAGQINGTTGYEEAAAQGL     +A      D +  SR D
Sbjct: 400 VDPRELAPTLETRRLRGLYLAGQINGTTGYEEAAAQGL-VAGANAAAPGGRDPLLLSRAD 458

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            Y+GV++DDL  +G  EPYRM ++RAE+R+ LRPDNAD RLT  G++LG +G  R   F 
Sbjct: 459 GYLGVLVDDLVGRGTSEPYRMLSARAEFRLRLRPDNADLRLTEAGLQLGLVGAERAASFQ 518

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL-----FS 520
           +  Q+      LL ++ L+S   +   +   QDG   +A + L+ P  ++  L       
Sbjct: 519 QRRQQVEDAEQLLDAIQLSSSAWARRGLHVSQDGDYISAAQMLTRPGITLSQLAAAAAAE 578

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
             P  ++   L         S   Y  +   E  E++ +E  LIP+  DYS+L  LS E 
Sbjct: 579 QVPGWQQLQELAAAA---AVSAVPYLEKMEAEVAELRRDEALLIPEWLDYSALQ-LSAED 634

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           +EKL+  +P +L  A +I G+TP+AL LLL +++K  
Sbjct: 635 REKLTAARPTSLAAAQRIPGVTPSALLLLLQHVRKRQ 671


>gi|307069506|ref|YP_003877983.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (gidA) [Candidatus Zinderia insecticola CARI]
 gi|306482766|gb|ADM89637.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           (gidA) [Candidatus Zinderia insecticola CARI]
          Length = 624

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 259/606 (42%), Positives = 382/606 (63%), Gaps = 10/606 (1%)

Query: 19  EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
           EAA + + + + T LI++    IG +SCNP+IGG+GK HLV+EID+L G+MG  +D + I
Sbjct: 20  EAANICSNMNSITLLISNNIELIGELSCNPSIGGIGKSHLVKEIDSLGGIMGICSDESSI 79

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
            F++LN  KG AV+  R Q DR++Y+ ++  ++ +++NL + QG +     EKNI+  I 
Sbjct: 80  NFQILNYSKGNAVKSTRVQLDRKIYKDSIINKLKNKKNLFLFQGIIDDIIIEKNIVLGIK 139

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            ++N +     +++TTGTF   +IHIG     +GR+G++ ++ LF    KF F    LKT
Sbjct: 140 TKNNFIFLSKCLIITTGTFFNPLIHIGNYSYISGRLGENLNSKLFEKLKKFGFQYSTLKT 199

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENI 257
           GTP RLDGK+I + K +KQF +  +  FS ++D KI  +QI C IT TN  T+ II +NI
Sbjct: 200 GTPPRLDGKSINFLKLKKQFLNSNIQYFSILSDNKIKKKQINCWITNTNFYTYYIIKKNI 259

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             S++++G+I S GPRYCPSIEDKI +FG++  H+IFLEPEGLN++  YPNGIS +LP E
Sbjct: 260 YQSSLFNGNINSIGPRYCPSIEDKINKFGKK-KHKIFLEPEGLNSNEFYPNGISNSLPIE 318

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           IQ + +RT+ GLE VNI RPGY+IEY+Y     L  +LE+K IS LF AGQINGTTGYEE
Sbjct: 319 IQIKILRTLNGLENVNITRPGYSIEYNYFIGNHLKHSLESKIISNLFFAGQINGTTGYEE 378

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           AA+QG++AGIN++ KSN        R  +YIGV+IDDL  K + EPYR+FT+ +EY+++L
Sbjct: 379 AASQGIIAGINASLKSNNKKKWYPKRYQAYIGVLIDDLIKKKINEPYRIFTTSSEYKLNL 438

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK- 496
           R DN   RLT IG KL C+  ++   F K  + +     LLK+ +LT  N+ ++ I+F  
Sbjct: 439 REDNVYLRLTEIGRKLKCVKNKQWFLFKKKKKIFKKKIRLLKTNLLTFNNIKNSKINFLF 498

Query: 497 ---QDGKTRTAYEFLSYPDFSIQNLFSICPDARK----FSSLVIERLQIESSYAAYTGRQ 549
              +     + +E ++    +  N F+I  +       F + + E+++    Y  Y  +Q
Sbjct: 499 NNIKKKNIYSFFEIINKFKLNYDNFFNIFTNNNFKYKIFENDIKEQIENFCKYYGYYNKQ 558

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
           +    +I   +   I K+ +Y+ + +LS E K K +ILKP NL +A  I G+    +  L
Sbjct: 559 LKNILKINKNKNYKINKNLNYNFIKSLSKEAKIKFNILKPNNLKEALSISGIDFNDILNL 618

Query: 610 LIYIKK 615
             YIKK
Sbjct: 619 FFYIKK 624


>gi|326916316|ref|XP_003204454.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Meleagris
           gallopavo]
          Length = 590

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/538 (40%), Positives = 322/538 (59%), Gaps = 22/538 (4%)

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSIVMQDNSMIRCSTVVLT 153
           L  L+  +EILS   L V +  V              K  ++ +V+ D S +   +V+LT
Sbjct: 12  LRNLSANKEILSTPLLTVREASVEDLLLTEPEANHPGKCQVTGVVLGDGSTVCAGSVILT 71

Query: 154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
           TGTFLRGVI +G    PAGR+GD P+  L  +  K  F  GRLKTGTP RL   +I +  
Sbjct: 72  TGTFLRGVILMGLETHPAGRLGDQPAVGLAQTLEKLGFTVGRLKTGTPPRLAKDSINFSG 131

Query: 214 TEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
            E++  D   +PFSF++  +      Q+ C +T TNL+  +I+++N+  +       K  
Sbjct: 132 LEERVPDNPPVPFSFLSKAVWIKPEDQLLCYMTHTNLKAQQIVLDNLHLNDHVRETAK-- 189

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GPRYCPS E K++RF  R  HQ++LEPEGL +DV+YP G+S  LP E+Q Q IR+IPGLE
Sbjct: 190 GPRYCPSFESKVLRFPNRE-HQVWLEPEGLESDVIYPQGLSMTLPPELQEQVIRSIPGLE 248

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           K  I++PGY ++YD+++P++L  +LE++ +  LF AGQINGTTGYEEAAAQG++AGIN+ 
Sbjct: 249 KAKILQPGYGVQYDFLDPRQLTASLESRLVQRLFFAGQINGTTGYEEAAAQGVIAGINAC 308

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG 450
            +         SRT+ Y+GV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD RLT  G
Sbjct: 309 LRVQGKPPFIVSRTEGYVGVLIDDLTTLGTTEPYRMFTSRVEFRMSLRPDNADARLTHRG 368

Query: 451 M-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYE 506
             + GC+ ++R ++  +         + LKSL  +    S            R   +A++
Sbjct: 369 FEEAGCVSQQRYEQAIQMRAAIEDGIATLKSLQFSVSRWSHLVPEVPISSNRRSPLSAFD 428

Query: 507 FLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
            L YP+ ++  L    P+  RK +    + ERL+IE++Y      Q  E +E++ +E   
Sbjct: 429 ILRYPEANMDILARAIPEPLRKLAEWRELSERLKIEAAYEWCVINQQQEIEEVRRDEALR 488

Query: 564 IPKDFDYSSLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           +P+D DY ++  +LS E++EKL+  +P  +   S+I G+TPAA+  LL ++K   +K 
Sbjct: 489 LPEDIDYFAIDASLSAEVREKLNSSRPQTIGAVSRIPGVTPAAIINLLRFVKAEKLKA 546


>gi|313681129|ref|YP_004058868.1| glucose inhibited division protein a [Oceanithermus profundus DSM
           14977]
 gi|313153844|gb|ADR37695.1| glucose inhibited division protein A [Oceanithermus profundus DSM
           14977]
          Length = 607

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/588 (38%), Positives = 323/588 (54%), Gaps = 18/588 (3%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T   + IG M CNPA+GG GK  LV EI+AL G MGR+ADAA I  RVLN  KGPAVR
Sbjct: 35  LVTGDPARIGLMPCNPAVGGPGKSQLVHEIEALGGWMGRLADAAAIHTRVLNRSKGPAVR 94

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R Q DR+ Y  A +  + ++ N+ V++GE  G   E   ++ +   D  ++     VL
Sbjct: 95  SLRVQTDRDAYAAAARAALAAEANVAVVRGEAVGLVREGGRLAGVRTADGRVLAAPAAVL 154

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
             GTFLRG I  G    PAGR G+ P+  L  +       T RLKTGTP R+  ++I + 
Sbjct: 155 AAGTFLRGRIWYGLQSRPAGRQGEPPARHLSAALEALGHRTLRLKTGTPPRILRRSIDFA 214

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
             E+   D+    FS          +    TRT+  THR+I++++  S +Y+G +++ GP
Sbjct: 215 ALEEVPPDDPPGSFSGR-PGPHAAALPTWTTRTHPGTHRLILDHLDASPLYAGAVQAVGP 273

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIEDK+VRF +++ H +F+EP+GL T  VY  G S++LP  +Q + +RT+PG E+ 
Sbjct: 274 RYCPSIEDKVVRFADKDSHLLFVEPDGLETSEVYLQGFSSSLPPAVQERMVRTLPGFERA 333

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            I R  YA+EYD  +P +L P L ++ + GLFLAGQ+NGT+GYEEAAAQGLVAG+N+AR 
Sbjct: 334 VIQRYAYAVEYDAFDPTDLSPGLMSRHLPGLFLAGQVNGTSGYEEAAAQGLVAGLNAARF 393

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           +   D +     ++YIGV+IDDL ++GV EPYRM TSR   R+ LR DNAD RL P    
Sbjct: 394 AAGEDAVVLGPDEAYIGVLIDDLVTRGVDEPYRMMTSRVALRLLLRGDNADERLVPKAAA 453

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
            G       +R              L    +                +   A  +L  P 
Sbjct: 454 WGLRPAADAERVTAKYARVRAELERLGRARI----------------EGAPASVWLRRPG 497

Query: 513 FSI-QNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
            ++ +      P     S    E+++I + YA Y  RQ  +           IP + DY 
Sbjct: 498 ATLAEAWHRAGPPPAPLSREEAEQVEIRAKYAGYIERQERQRSRTGELAAYPIPPELDYR 557

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
           ++  LS E  EKLS  +P NL +A++I G+  + +  LL+++ +   +
Sbjct: 558 TVHNLSREAIEKLSRRRPANLAEAARIPGLRDSEITALLVHLARRGRR 605


>gi|308804834|ref|XP_003079729.1| glucose inhibited division protein A (ISS) [Ostreococcus tauri]
 gi|116058186|emb|CAL53375.1| glucose inhibited division protein A (ISS) [Ostreococcus tauri]
          Length = 595

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/562 (39%), Positives = 303/562 (53%), Gaps = 42/562 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G GHAGCEAA  +A++GA T L+T     +    CNPA+GG  K  LV EIDAL
Sbjct: 57  YDVIVVGAGHAGCEAALASARVGAKTLLLTLSLDRVAWQPCNPAVGGPAKSQLVHEIDAL 116

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G MG ++D   +Q RVLN  +GPAV   R Q D+  Y   M+  +  +ENL + +G V 
Sbjct: 117 GGAMGIISDKTYVQKRVLNASRGPAVWALRAQTDKYEYSREMRATLEKEENLSIREGMVT 176

Query: 126 GFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 N  +  +V           VVLTTGTF+ G I +G+  + AGR G++PS  L  
Sbjct: 177 ELLLGNNDDVRGVVTHFGMEFEAKAVVLTTGTFMNGQIWVGRKTLAAGRAGEAPSEGLTE 236

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F+  RLKTGTPAR+D +TI +   E+Q  DE +  FSF               R
Sbjct: 237 YLQTLGFEVDRLKTGTPARVDTRTIDYTNLEEQPGDEDVRWFSFD--------------R 282

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGLN 301
                 R I+  + H A   GD ++       + +   DK+    +   HQIFLEPEG +
Sbjct: 283 GRARGARAIV--LPHDANNGGDAQTDRRESIGNADVRWDKLCACRQGESHQIFLEPEGRS 340

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           T  VY  G ST LPE++Q + +RT+PGLE V I+RP YA+EYD++   +  PTLETKKIS
Sbjct: 341 TPEVYVQGFSTGLPEKLQLELLRTLPGLENVKILRPAYAVEYDFLPAYQCKPTLETKKIS 400

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSAR-----KSNKLDCICFSRTDSYIGVMIDDLT 416
           GLF +GQINGTTGYEEAAAQGL+AG N+A+       N    + F R  SY+G +IDDL 
Sbjct: 401 GLFFSGQINGTTGYEEAAAQGLLAGANAAQIAKGGARNGAKELIFPRESSYLGTLIDDLC 460

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K + EPYRM TSR+EYR+ LR DNAD RLTP+G + G I + R  +F K     +   +
Sbjct: 461 TKDLREPYRMLTSRSEYRLVLRSDNADMRLTPLGREFGLISDARWAKFEKKRDAVDNEIA 520

Query: 477 LLKSLVLTSKN---LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
            L+S+ +  K+        +S     ++ T  E L  P      L     +         
Sbjct: 521 RLQSVRVNVKDDFTQRVLDLSGSGSRQSYTLEELLRRPQVPYSLLEEHGGN--------- 571

Query: 534 ERLQIESSYAAYTGRQMIEAKE 555
                   Y+ +  RQ ++ + 
Sbjct: 572 -----RVKYSGFIKRQEVQVER 588


>gi|308804970|ref|XP_003079797.1| GLUCOSE INHIBITED DIVISION PROTEIN A (ISS) [Ostreococcus tauri]
 gi|116058254|emb|CAL53443.1| GLUCOSE INHIBITED DIVISION PROTEIN A (ISS) [Ostreococcus tauri]
          Length = 920

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/624 (43%), Positives = 362/624 (58%), Gaps = 47/624 (7%)

Query: 33  LITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
           L+T   + TIG MSCNP++GGLGKG LVRE+DALDGLMGR+ADA+GIQFRVLN  KGPAV
Sbjct: 306 LVTPNPNGTIGEMSCNPSVGGLGKGTLVREVDALDGLMGRIADASGIQFRVLNSSKGPAV 365

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
           RG R Q DRELY+    R +     L+V   E          +  +++     +R  TVV
Sbjct: 366 RGARAQMDRELYKKEALRLVSGIGGLEVSSNE------GGGRVRGVMLDTGRALRSRTVV 419

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDS-----------PSNSLFNSFMKFDFDTGRLKTGT 200
           +TTGTFL GV+HIG  ++ AGR+ ++            ++SL  +     FD GR+KTGT
Sbjct: 420 ITTGTFLNGVLHIGSKRVVAGRLANASTENADVQAGKAAHSLAKTLYGVGFDMGRMKTGT 479

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTD---------KITNRQIECGITRTNLETHR 251
           P RLDG +I W   + Q  DE  IPF+F +          + T  QI C  T T  ET +
Sbjct: 480 PPRLDGNSIDWAACQPQPGDELPIPFTFTSSSRRVGAEPWRPTAPQIMCHSTYTTPETEK 539

Query: 252 IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS 311
            I    K       +     PRYCPSIE K+ RF  RN H+++LEPEGLNT VVYPNGI+
Sbjct: 540 FIAAAPKSKYELDMEGSPTTPRYCPSIESKVRRFPGRN-HRVWLEPEGLNTSVVYPNGIT 598

Query: 312 TALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING 371
             L  ++Q + +RTIPGLEKV+I++PGY +EYDY++P+EL   LETKK+ GLFLAGQING
Sbjct: 599 NNLEPDLQVKMVRTIPGLEKVDILKPGYGVEYDYVDPRELKINLETKKVRGLFLAGQING 658

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
           TTGYEEAAAQG++AG N+A      +     R  SY+GV++DDLTS+G  EPYRMF+SR 
Sbjct: 659 TTGYEEAAAQGIIAGANAAS--TDGEEFILPRYSSYLGVLVDDLTSRGTSEPYRMFSSRV 716

Query: 432 EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           EYR+S+R DNAD RLT +G + G +   R +  A+           L ++ L      S 
Sbjct: 717 EYRLSIRSDNADLRLTELGERFGLVSAERARAGARRSALVKQASEALDAISLLPSRWQSY 776

Query: 492 S--ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDA--------------RKFSSLVIER 535
           +  +   + G+  +A   LS   + I  +     DA                      E 
Sbjct: 777 APDLPIAKHGRPLSASNMLSQR-WDIDEILRAATDALGASDARVQVLHAVNGEDRSAFEC 835

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQA 595
             IE+ Y  Y  RQ  + ++I+ EE+ +IP  FDYS++  LS E +EKL  ++P    +A
Sbjct: 836 AAIEAYYRPYVERQAQDIEDIRREEELVIPDAFDYSTIDNLSLEDREKLEAVRPTTFARA 895

Query: 596 SKIEGMTPAALNLLLIYIKKNTVK 619
           S+I G+TPAAL  L   + +   +
Sbjct: 896 SRISGVTPAALLSLFRVVTRKKHR 919


>gi|153827710|ref|ZP_01980377.1| hypothetical protein A5A_2951 [Vibrio cholerae MZO-2]
 gi|149737813|gb|EDM52718.1| hypothetical protein A5A_2951 [Vibrio cholerae MZO-2]
          Length = 425

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 178/425 (41%), Positives = 259/425 (60%), Gaps = 6/425 (1%)

Query: 206 GKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMENIKHSAIYS 264
             ++ +   E Q  D     FSFM  +  + RQI C IT TN  TH +I  N+  S +Y+
Sbjct: 1   ANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYA 60

Query: 265 GDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
           G I+  GPRYCPSIEDK++RF +++ HQIF+EPEGL T  +YPNGIST+LP ++Q Q +R
Sbjct: 61  GIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVR 120

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLV 384
           ++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQGL+
Sbjct: 121 SMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKFIHGLFFAGQINGTTGYEEAAAQGLM 180

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
           AG+N++  S   +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DNAD 
Sbjct: 181 AGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADL 240

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKT 501
           RLT    +LG + + R  RF + I      R  L+   +   ++    ++        + 
Sbjct: 241 RLTEKARELGLVDDARWARFNQKIDNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSRE 300

Query: 502 RTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
            +  + L  P+ + + L ++   A     +   E+++I+  Y  Y  RQ  E ++    E
Sbjct: 301 ASGEDLLRRPEMTYELLTTLPAFAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHE 360

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV-K 619
              +P + DY  +  LSNE+  KL+  KP  +  AS+I G+TPAA+++LL+++KK+ + K
Sbjct: 361 HTKLPAELDYKQVKGLSNEVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKHGMLK 420

Query: 620 LNEIV 624
             E  
Sbjct: 421 KGEAA 425


>gi|323455702|gb|EGB11570.1| hypothetical protein AURANDRAFT_58702 [Aureococcus anophagefferens]
          Length = 663

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/629 (38%), Positives = 347/629 (55%), Gaps = 39/629 (6%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+T +  T+G MSCNP+IGG+GKGHLVRE+DAL G+MGR  DAAGI FR+LN +KGPAV 
Sbjct: 32  LVTQRVDTVGEMSCNPSIGGIGKGHLVREVDALGGVMGRAIDAAGIHFRMLNRRKGPAVW 91

Query: 93  GPRTQADRELYRLAMQREILS--QENLDVIQGEVAGFNTEKN----IISSI---VMQDNS 143
           GPR QADR+LYR  M+ EI S   ENLDV++        E       + ++   + ++  
Sbjct: 92  GPRAQADRDLYRAFMRGEIASGAYENLDVLEASAEDVLFEDRGGERRVRAVAVTIDEEPV 151

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF------MKFDFDTGRLK 197
            +  S  V+TTGTFLRG I +G+   PAGR                   +      GRLK
Sbjct: 152 EVATSACVITTGTFLRGTIWLGQESRPAGRFVRDDGTGGSGDLSGDTLELDLGLPLGRLK 211

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIECGITRTNLETHRIIMEN 256
           TGTP RLDG+TI W K   Q +++    FS+   + + R  + C  T TN  TH I+   
Sbjct: 212 TGTPPRLDGRTIDWSKCVAQPSEDPPFAFSYGNAEASPRGTVACARTATNERTHDIVRAE 271

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
               A  S  +   GPRYCPS+  K+ RFG+R+ H ++LEPEGLNTD+VYPNG+S A P 
Sbjct: 272 AHTLAPPS--VSGTGPRYCPSLYKKVERFGDRSSHVVWLEPEGLNTDLVYPNGLSGAFPL 329

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           ++Q + +R+I GLE   I++PGY +EYD+++P+ L   L  KK  GLFLAGQI GTTGYE
Sbjct: 330 DVQERIVRSIAGLENAVIVQPGYDVEYDFVDPRSLDHGLGVKKARGLFLAGQICGTTGYE 389

Query: 377 E-------AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
           E       A A   +A  +    ++        R + YIGV++DDL ++G +EPYRMFTS
Sbjct: 390 EAAALGLVAGANAALAAGDRDAAASARRRFVVGRDEGYIGVLVDDLVTRGTMEPYRMFTS 449

Query: 430 RAEYRISLRPDNADNRLTPIGMKL--GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           RAEYR++LR DNAD RLT +G     G +   R        +     ++   +L    + 
Sbjct: 450 RAEYRLALRADNADLRLTRLGAARVPGLVEPDRLAACEARARHVADAKARCDALRFAPEA 509

Query: 488 LSSTSISFKQDGKTR-------TAYEFLSYPDFSIQNLFSIC---PDARKFSSLVIERLQ 537
            +   +S  +  +         +A + L+ P  +++ + ++     +     +   + + 
Sbjct: 510 WAPAFLSADETNRDDHSKRSHKSASQLLAMPHATLEGVLALAAAQGEELLIEADARDTVA 569

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS--LPALSNELKEKLSILKPFNLLQA 595
               YAAY  R   +    K  +   IP D DYS+  LPALS E +EKL   +P    +A
Sbjct: 570 ALCKYAAYLDRMDRDVAAYKRNDATKIPPDLDYSAANLPALSAEEREKLGAARPHTFAEA 629

Query: 596 SKIEGMTPAALNLLLIYIKKNTVKLNEIV 624
           ++I G+TPA+L  L  ++   + + + + 
Sbjct: 630 ARISGVTPASLVYLYNHVANGSKRPSAVA 658


>gi|222873270|gb|EEF10401.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 216/408 (52%), Positives = 270/408 (66%), Gaps = 2/408 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+IGG+GKGHLV+E+DA+ G M    D AGIQFR+LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPSIGGIGKGHLVKEVDAMGGAMAAATDEAGIQFRILNSSKGPAVRATRAQADRVLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R A++  + +Q NL + Q  V     E + +     Q     R   VVLT GTFL G IH
Sbjct: 61  RKAIRTRLENQPNLMLFQQAVDDLMVEGDRVVGARTQVGIDFRARAVVLTAGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           +G      GR GD  + SL     +     GRLKTGTP R+DG+TI +   E+Q  D   
Sbjct: 121 VGLDNYTGGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMEEQPGDLDP 180

Query: 224 IP-FSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           +P FSF+     + Q + C IT TN  TH +I   +  S +Y+G I+  GPRYCPSIEDK
Sbjct: 181 VPVFSFLGRPEQHPQQLPCWITHTNSRTHDVIRGGLDRSPMYTGVIEGVGPRYCPSIEDK 240

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           I RF  +  HQIFLEPEGL T+  YPNGIST+LP ++Q + + +I GLE  +I+RPGYAI
Sbjct: 241 IHRFASKESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVHSIRGLENAHILRPGYAI 300

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           EYDY +P+ L  +LE+K I GLF AGQINGTTGYEEAAAQGL+AGIN+     + D    
Sbjct: 301 EYDYFDPRGLKSSLESKAIEGLFFAGQINGTTGYEEAAAQGLLAGINAGCYVRERDAWTP 360

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
            R  +Y+GV++DDL ++GV EPYRMFTSRAE+R+SLR DNAD RLT I
Sbjct: 361 RRDQAYLGVLVDDLITRGVTEPYRMFTSRAEFRLSLREDNADMRLTEI 408


>gi|213615933|ref|ZP_03371759.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 388

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 205/388 (52%), Positives = 263/388 (67%), Gaps = 1/388 (0%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP IGG+GKGHLV+E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LY
Sbjct: 1   MSCNPTIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R A++  + +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IH
Sbjct: 61  RQAVRIALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG      GR GD PS  L     +      RLKTGTP R+D +TI +    +Q  D  +
Sbjct: 121 IGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPM 180

Query: 224 IPFSFMTDKITNRQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
             FSFM +   + Q + C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK+
Sbjct: 181 PVFSFMGNAFQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKV 240

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           +RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIE
Sbjct: 241 MRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIE 300

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
           YD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +
Sbjct: 301 YDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPA 360

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           R+ +Y+GV++DDL + G  EPYRMFTSR
Sbjct: 361 RSQAYLGVLVDDLCTLGTKEPYRMFTSR 388


>gi|149408726|ref|XP_001506626.1| PREDICTED: similar to coronin, actin binding protein, 2B
           [Ornithorhynchus anatinus]
          Length = 1086

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/488 (44%), Positives = 308/488 (63%), Gaps = 17/488 (3%)

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
            D S +   +V+LTTGTFLRG++ IG  + PAGR+GD PS  L  +  +  F  GRLKTG
Sbjct: 504 SDGSKVPAESVILTTGTFLRGMVLIGLEEHPAGRLGDQPSVGLAQTLEELGFVLGRLKTG 563

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ---IECGITRTNLETHRIIMEN 256
           TP R+   ++ +   +K   D   +PFSF+++K+  R    + C +T TN E  +I+ EN
Sbjct: 564 TPPRIAKDSVNFSILKKTTPDNPPVPFSFLSEKVWIRPEDQLPCYLTFTNSEVEQIVREN 623

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           I  +          GPRYCPSIE K++RF  R  HQI+LEPEGL++D++YP G+S  LP 
Sbjct: 624 IHLNNHVKETT--RGPRYCPSIESKVLRFPNR-VHQIWLEPEGLDSDLIYPQGLSVTLPA 680

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           E+Q Q I  I GLEK  I++PGY ++YD+++P+++ P+LETK +  LF AGQINGTTGYE
Sbjct: 681 ELQEQLITRIKGLEKAKIVQPGYGVQYDFLDPRQITPSLETKLVQRLFFAGQINGTTGYE 740

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRIS 436
           EAAAQG+VAGIN++ K         SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+S
Sbjct: 741 EAAAQGVVAGINASLKVRGKPPFIISRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLS 800

Query: 437 LRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLS----ST 491
           LRPDNAD+RLT  G  + GC+  +R +R +          S+LKS+  +S   S      
Sbjct: 801 LRPDNADSRLTFRGYEEAGCVSRQRYERASMVKSSLEEGISVLKSVQFSSTKWSRLIPEL 860

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKF--SSLVIERLQIESSYAAYTGR 548
            IS  +     +A + L+Y +  ++ L  + PD  +KF  S  + ERL+IE+ Y      
Sbjct: 861 PISLSK-SVPCSALDILTYEEVDLEKLAKVIPDPLKKFVESRELTERLKIEAIYETMISL 919

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAAL 606
           Q  E +E++ +E   +P+D DY S+   +LS+E++EKL+  +P  +  AS+I G+TPAA+
Sbjct: 920 QQQEIEEVRRDEALQLPEDLDYMSIQTVSLSHEVREKLNSNRPRTIGAASRIPGVTPAAI 979

Query: 607 NLLLIYIK 614
             LL ++K
Sbjct: 980 VNLLRFVK 987


>gi|323333595|gb|EGA74988.1| Mto1p [Saccharomyces cerevisiae AWRI796]
          Length = 532

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/527 (41%), Positives = 323/527 (61%), Gaps = 19/527 (3%)

Query: 107 MQREI---LSQENLDVIQGEVAGFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
           MQRE+    +  NL ++Q +VA            +I  +V+ D + +    V++TTGTFL
Sbjct: 1   MQRELSDKKAHPNLYLLQNKVADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFL 60

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
              IHIG  +I AGR+G+ P+  + N+   +  F  GRLKTGTPARL  ++I +   E Q
Sbjct: 61  SAEIHIGDKRIAAGRIGEQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQ 120

Query: 218 FADERLIPFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
             DE  +P SF+ + +     +Q++C  T T  + H  +  N+  S I+  D    GPRY
Sbjct: 121 KGDELPVPMSFLNETVSVEPTKQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRY 179

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIE KI+RF +R+ H+I+LEPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I
Sbjct: 180 CPSIEAKILRFPDRSSHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEI 239

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-ARKS 393
           ++P Y +EYDY++P++L P+LETK + GLFLAGQINGTTGYEEAAAQG++AGIN+     
Sbjct: 240 LQPAYGVEYDYVDPRQLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSR 299

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            + + +   R+ +YIGV+IDDL + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +L
Sbjct: 300 QEREQLVLKRSQAYIGVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQL 359

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD 512
           G I   R  ++++    Y+     L++  L+S+  SS    +     + R+A+E   + D
Sbjct: 360 GIISPVRLSQYSRDKHLYDETIRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKD 419

Query: 513 FSIQNLFSICPDAR----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             +  L+   PD           V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+
Sbjct: 420 MDLHKLYECIPDLPINLLDIPMHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDY 479

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           DY  LP LS E K  L+ ++P  + QA +I+G+T AAL  L    +K
Sbjct: 480 DYRQLPTLSTECKLLLNRVQPLTIGQARRIQGITAAALFELYRVARK 526


>gi|323337734|gb|EGA78978.1| Mto1p [Saccharomyces cerevisiae Vin13]
 gi|323348736|gb|EGA82977.1| Mto1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355163|gb|EGA86991.1| Mto1p [Saccharomyces cerevisiae VL3]
          Length = 532

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 218/527 (41%), Positives = 323/527 (61%), Gaps = 19/527 (3%)

Query: 107 MQREI---LSQENLDVIQGEVAGFNT-----EKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
           MQRE+    +  NL ++Q +VA            +I  +V+ D + +    V++TTGTFL
Sbjct: 1   MQRELSDKKAHPNLSLLQNKVADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFL 60

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
              IHIG  +I AGR+G+ P+  + N+   +  F  GRLKTGTPARL  ++I +   E Q
Sbjct: 61  SAEIHIGDKRIAAGRIGEQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQ 120

Query: 218 FADERLIPFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
             D+  +P SF+ + +     +Q++C  T T  + H  +  N+  S I+  D    GPRY
Sbjct: 121 KGDKLPVPMSFLNETVSVEPTKQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRY 179

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIE KI+RF +R+ H+I+LEPEG N+DV+YPNGIS ++PE++Q Q +R IPG+  V I
Sbjct: 180 CPSIEAKILRFPDRSSHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEI 239

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS-ARKS 393
           ++P Y +EYDY++P++L P+LETK + GLFLAGQINGTTGYEEAAAQG++AGIN+     
Sbjct: 240 LQPAYGVEYDYVDPRQLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSR 299

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            + + +   R+ +YIGV+IDDL + GV+EPYRMFTSR+E+RIS+R DNAD RLTPIG +L
Sbjct: 300 QEREQLVLKRSQAYIGVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQL 359

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TSISFKQDGKTRTAYEFLSYPD 512
           G I   R  ++++    Y+     L++  L+S+  SS    +     + R+A+E   + D
Sbjct: 360 GIISPVRLSQYSRDKHLYDETIRALQNFKLSSQKWSSLLQANIAPQAENRSAWEIFRFKD 419

Query: 513 FSIQNLFSICPDAR----KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDF 568
             +  L+   PD           V+ ++ I+  Y  Y  +Q    K  + +E  L+P+D+
Sbjct: 420 MDLHKLYECIPDLPINLLDIPMHVVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDY 479

Query: 569 DYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           DY  LP LS E K  L+ ++P  + QA +I+G+T AAL  L    +K
Sbjct: 480 DYRQLPTLSTECKLLLNRVQPLTIGQARRIQGITAAALFELYRVARK 526


>gi|296314586|ref|ZP_06864527.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria polysaccharea ATCC 43768]
 gi|296838663|gb|EFH22601.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Neisseria polysaccharea ATCC 43768]
          Length = 402

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/395 (52%), Positives = 260/395 (65%), Gaps = 1/395 (0%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 8   KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G M    D +GIQFR LN  KG AVR  R QADR LY+ A++  + +QENLD+ Q  
Sbjct: 68  ALGGAMALATDKSGIQFRRLNASKGAAVRATRAQADRILYKAAIREMLENQENLDLFQQA 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +   IS ++       +   VVLT GTFL G IHIG      GR GD  + SL 
Sbjct: 128 VEDVILDGERISGVITAMGVEFKARAVVLTAGTFLSGKIHIGLENYEGGRAGDPAAKSLG 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIECGI 242
               +     GRLKTGTP R+DG+TI + +  +Q  D  +  FS   +  +  RQ+ C I
Sbjct: 188 GRLRELKLPQGRLKTGTPPRIDGRTIDFSQLTEQPGDTPVPVFSVRGNADMHPRQVSCWI 247

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN +TH II      S +++G I+  GPRYCPSIEDKI RF +++ HQIFLEPEGL T
Sbjct: 248 THTNTQTHDIIRSGFDRSPMFTGKIEGVGPRYCPSIEDKINRFADKDSHQIFLEPEGLTT 307

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
              YPNGIST+LP +IQ   +R++ GLE  +I+RPGYAIEYDY +P+ L  +LETK I G
Sbjct: 308 HEYYPNGISTSLPFDIQIALVRSMKGLENAHILRPGYAIEYDYFDPRNLKASLETKTIEG 367

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           LF AGQINGTTGYEEAAAQGL+AG N+       D
Sbjct: 368 LFFAGQINGTTGYEEAAAQGLLAGANACNMCVGED 402


>gi|119569150|gb|EAW48765.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_f [Homo sapiens]
          Length = 555

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/510 (40%), Positives = 304/510 (59%), Gaps = 16/510 (3%)

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + ++     D S +   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +
Sbjct: 29  DLPASASCVAG-TTVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQT 87

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGI 242
             K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +      Q+ C +
Sbjct: 88  LEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYL 147

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ++LEPEG+++
Sbjct: 148 THTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGMDS 204

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  
Sbjct: 205 DLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQR 264

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G  E
Sbjct: 265 LFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSE 324

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           PYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+
Sbjct: 325 PYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSI 384

Query: 482 VLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIER 535
              S                     A + L Y +  + +L    P+  +K++    + ER
Sbjct: 385 EFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAER 444

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLL 593
           L+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  + 
Sbjct: 445 LKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIG 504

Query: 594 QASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
            AS+I G+TPAA+  LL ++K    + + +
Sbjct: 505 AASRIPGVTPAAIINLLRFVKTTQRRQSAM 534


>gi|195151127|ref|XP_002016499.1| GL10454 [Drosophila persimilis]
 gi|194110346|gb|EDW32389.1| GL10454 [Drosophila persimilis]
          Length = 479

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/441 (50%), Positives = 306/441 (69%), Gaps = 13/441 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG EA+A AA++GA T L+THK  TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 30  YDVVVIGGGHAGTEASAAAARMGARTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDAL 89

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+ GR  D +G+ ++VLN ++GPAV GPR Q DR+LY+ A+Q+E+ S +NL++    V 
Sbjct: 90  DGVCGRCCDVSGVHYKVLNKRRGPAVWGPRAQIDRQLYKKAVQKELHSTQNLEIRAAAVD 149

Query: 126 GFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E         + +++ +  ++R  +VVLTTGTFLR  I+IG    PAGRMGD+P+ 
Sbjct: 150 NILIEDEQHQHRRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVRPAGRMGDAPAK 209

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQ 237
           +L  +  +  F  GRLKTGTP R+   ++ + + E+   D+   PFSF+   +      Q
Sbjct: 210 ALGEAIDRLGFRMGRLKTGTPPRIAKSSVDFSQLERHEGDDPPTPFSFLNSHVWLPAKEQ 269

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T    + I+  N+  +   + +I   GPRYCPSIE KI+RFG R  HQ++LEP
Sbjct: 270 LPCHLTYTTPLVNDIVRNNLHVNRHVTEEI--TGPRYCPSIESKILRFGAR-VHQVWLEP 326

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++ +VYP GIS  LP E Q + +  I GLE   +++PGY +EYD+I+P+ELFPTLET
Sbjct: 327 EGLDSPLVYPQGISCTLPHEQQVELVHAIKGLEHAEVVQPGYGVEYDFIDPRELFPTLET 386

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD--CICFSRTDSYIGVMIDDL 415
           K++ GLF AGQINGTTGYEEAAAQG+VAG N+A K+   D   +  SRT+ YIGV++DDL
Sbjct: 387 KRMPGLFFAGQINGTTGYEEAAAQGIVAGANAAGKTRHADGRQLTISRTEGYIGVLVDDL 446

Query: 416 TSKGVLEPYRMFTSRAEYRIS 436
           TS G + PYRMFTSRAE+R+S
Sbjct: 447 TSLGTMSPYRMFTSRAEFRLS 467


>gi|148261392|ref|YP_001235519.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Acidiphilium cryptum JF-5]
 gi|205831483|sp|A5G168|MNMG_ACICJ RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|146403073|gb|ABQ31600.1| glucose inhibited division protein A [Acidiphilium cryptum JF-5]
          Length = 576

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 259/572 (45%), Positives = 338/572 (59%), Gaps = 49/572 (8%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+   IG MSCNPAIGG+GKGHLVREIDALDG+MGR ADAA I F++LN  KGPAV 
Sbjct: 35  LLTHRRDRIGEMSCNPAIGGIGKGHLVREIDALDGVMGRAADAACIHFKMLNRSKGPAVW 94

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF-NTEKNIISSIVMQDNSMIRCSTVV 151
           GPR QADR LYR A+Q  + +Q+ L +++GE A    T    +++++      I C   V
Sbjct: 95  GPRAQADRGLYRAAVQALLAAQDGLTILEGEAADLELTADGALAAVITGAGGRIACRAAV 154

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LTTGTFLRGV+H G+     GR+GD+ SN+L           GRLKTGTPARLD ++I W
Sbjct: 155 LTTGTFLRGVLHFGERTEEGGRVGDAASNALSARLRGLGLALGRLKTGTPARLDRRSIDW 214

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
           +   +   +    PFS +T +I N QI C I+ T  ETH II  N+  SA+Y G I   G
Sbjct: 215 EALPEDRGEAEPAPFSLLTGRIANPQISCRISETTPETHAIINANLHRSAVYGGRIDGAG 274

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRF ER  HQ+FLEPEGL  + VYPNGIST+LPEE+Q  FIRT+PGL +
Sbjct: 275 PRYCPSIEDKVVRFAERPRHQVFLEPEGLEDETVYPNGISTSLPEEVQEAFIRTMPGLSR 334

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             ++RPGYA+EYDY++P+EL   L  KK+ GLFLAGQINGTTGYEEA AQGL+AG+N+A 
Sbjct: 335 AVLLRPGYAVEYDYVDPRELTHALALKKVPGLFLAGQINGTTGYEEAGAQGLLAGVNAAL 394

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +     +   R + YIGV++DDL ++GV EPYRMFTSR           A++RL+    
Sbjct: 395 VAAGRSMVTVRRHEGYIGVLVDDLVTRGVSEPYRMFTSR-----------AEHRLS---- 439

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
                                 LR+    L LT + L    +   +              
Sbjct: 440 ----------------------LRADNADLRLTPRGLDWGCVGPARQAAFAALAAA---- 473

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
                   +   D    S      +  +  Y  Y  RQ  E +    ++  LIP DFD+S
Sbjct: 474 -------VATVRDGGAGSEQAAAIVAADRLYEGYLTRQESEIRARAKDDAVLIPPDFDFS 526

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  LS E++ +L  ++P  L  A ++EGMTP
Sbjct: 527 VVGGLSAEIRARLERVRPETLGVAGRLEGMTP 558


>gi|301168597|emb|CBW28187.1| glucose inhibited division protein A [Bacteriovorax marinus SJ]
          Length = 615

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/613 (37%), Positives = 350/613 (57%), Gaps = 16/613 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+ +IGGGHAG EAA ++++      +++     + S  CNPA+GG+GKG +VREID
Sbjct: 2   QKFDIAIIGGGHAGVEAAWISSQFDLKVLILSMPNVGLASTPCNPAVGGVGKGQVVREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL GLMG++AD + IQ+R+LN  KG AV+  R Q D++LY    +  I +  N+ V++ +
Sbjct: 62  ALGGLMGQLADQSAIQYRILNESKGYAVQSTRVQVDKDLYTKNAEAMIAANPNITVVKEK 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V   + EKN     +  + S    +  ++TTGTFL G +H G++    GR+    S  + 
Sbjct: 122 V--ISVEKNGDQFSIKTEASYFNTTKCIVTTGTFLNGKLHTGEVSTSGGRVDCMASAGMG 179

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECG 241
             F        R KTGTPAR++  ++ + K  +Q +D R   F  + +       Q+ C 
Sbjct: 180 EIFSSVQTLGIRFKTGTPARINKDSLDYSKFVEQKSDGRTKNFHSLNNPYERFVDQVSCY 239

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           I  TN  T  II +N + S IY+G IK  GPRYCPSIEDK  R+ +RN H +F+EPEGL+
Sbjct: 240 IAHTNERTLGIIRDNKERSPIYNGQIKGVGPRYCPSIEDKAFRYPDRNSHHVFVEPEGLS 299

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
            + +YPNG+ST+LP+E+Q +F+RTI G E+  I   GYA+EYD ++  +L   LE   I 
Sbjct: 300 ANTIYPNGVSTSLPKEVQLEFLRTIEGFEECEIELYGYAVEYDVVDTSKLSDCLEYIDIP 359

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+NGT+GYEEAA QGL+AG N+A      D +   R +SYIGVM++DL S    
Sbjct: 360 GLFFAGQVNGTSGYEEAAGQGLIAGANAALSMKGKDNLVLDRAESYIGVMVEDLISNKRD 419

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
           EPYR+FT+R+E R+ +R DN+ NR+     ++G   +   K   ++I+E+  L  L KS 
Sbjct: 420 EPYRLFTARSENRLYVREDNSINRMAKYRFQMGL-DKEIDKYQQEFIEEFELLLGLCKST 478

Query: 482 VL--TSKNLSS-TSISFKQDGKTRTAYEFLSYPDFS-IQNLF-SICPDARKFSSLVIERL 536
            +  T +N     S+ +    K  T  E +     + ++ L   +      FSS V+   
Sbjct: 479 SIYVTPENKEYFASMGYGDLSKNITLSELVRRSQLNPVETLEQELSKRGALFSSEVVYTC 538

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL--PALSNELKEKLSILKPFNLLQ 594
            +   Y  Y  R +IE + I    ++ I    D+ S+    +SNE ++++  +KP    Q
Sbjct: 539 AVSIKYEGYINRSLIENERIYRLGRKKI----DWQSIVRGNISNECRQRIEEVKPTTFSQ 594

Query: 595 ASKIEGMTPAALN 607
             +I+G+ PA L 
Sbjct: 595 LQRIDGIRPATLA 607


>gi|303280251|ref|XP_003059418.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459254|gb|EEH56550.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 663

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 268/622 (43%), Positives = 357/622 (57%), Gaps = 45/622 (7%)

Query: 30  STALITHKTST-IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
           S ALIT   +  IG MSCNP+IGGL KG LVREIDALDGLMG  ADAAGIQFRVLN  KG
Sbjct: 25  SVALITPSPAKTIGEMSCNPSIGGLAKGTLVREIDALDGLMGVAADAAGIQFRVLNASKG 84

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS----- 143
           PAVRGPR Q DR  Y+  +Q  + +   + ++   VA   T       +++         
Sbjct: 85  PAVRGPRAQMDRTAYKNEIQSLLGNVGGVTIVDAAVADLITPAPRALGVILDRGGGGAST 144

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG----DSPSNS-------LFNSFMKFDFD 192
            IR + VV+ TGTFL+GV+H+G   IPAGR+     + P  S       L +      F 
Sbjct: 145 RIRSAAVVVATGTFLKGVLHVGSETIPAGRLPTAVTEGPDKSASAGANLLADRLYGMGFK 204

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--------DKITNRQIECGITR 244
            GR+KTGTP RLDG +I W   E+Q  DE   PF+F           + T RQ+ C  TR
Sbjct: 205 MGRMKTGTPPRLDGASIDWGGLEEQPGDEPPRPFAFHNGSLASVVPWRPTLRQVSCYATR 264

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T  +T   +    +             PRYCPS+E K  RF  R  H ++LEPEGL+TDV
Sbjct: 265 TTADTEAFVASKPRSKREAGAPGVGAAPRYCPSLESKFTRFPNRT-HLVWLEPEGLDTDV 323

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNG+S +L    Q + +RTIPGLE V ++RPGY +EYDY++P+EL  TLET+++SGLF
Sbjct: 324 VYPNGLSNSLEPSDQVEMLRTIPGLENVKMLRPGYGVEYDYVDPRELRATLETRRVSGLF 383

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKL----DCICFSRTDSYIGVMIDDLTSKGV 420
           LAGQINGTTGYEEAAAQGL+AG N+A  + +          SR  SY+GV++DDLT +G 
Sbjct: 384 LAGQINGTTGYEEAAAQGLLAGANAAGAAREDLGAIPNEITSRGGSYLGVLVDDLTRRGT 443

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            EPYRMF+SR E+R+S+RPDNAD RLT  G++ G +GE R +  A            L+S
Sbjct: 444 SEPYRMFSSRVEHRLSIRPDNADLRLTSAGVRCGLVGEARGRAAATRAALVTDALEALQS 503

Query: 481 LVLTSKNLSSTSISFKQD--------GKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
             ++     S  +  +            T   +  LS    ++Q + S  P A       
Sbjct: 504 AKMSPTLWRSMGLRAEASEVCNASDASVTDATFTALSDASATLQRVLSNDPSA------- 556

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
           +E    E  YA Y  +Q  + +++K EE   IP + DY+S+ +LS E  EKL+  KP N+
Sbjct: 557 LESAATECYYAPYLAKQRRDVEDLKSEEATTIPAELDYASIGSLSAEDVEKLNEAKPANI 616

Query: 593 LQASKIEGMTPAALNLLLIYIK 614
             A++I G+TPAAL  L+ + +
Sbjct: 617 AAAARISGVTPAALVSLIRHAR 638


>gi|326404881|ref|YP_004284963.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acidiphilium multivorum AIU301]
 gi|325051743|dbj|BAJ82081.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Acidiphilium multivorum AIU301]
          Length = 566

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 258/572 (45%), Positives = 339/572 (59%), Gaps = 49/572 (8%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           L+TH+   IG MSCNPAIGG+GKGHLVREIDALDG+MGR ADAA I F++LN  KGPAV 
Sbjct: 25  LLTHRRDRIGEMSCNPAIGGIGKGHLVREIDALDGIMGRAADAACIHFKMLNRSKGPAVW 84

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGF-NTEKNIISSIVMQDNSMIRCSTVV 151
           GPR QADR LYR A+Q  + +Q+ L +++GE A    +    +++++    + I C   V
Sbjct: 85  GPRAQADRGLYRAAVQALLAAQDGLTILEGEAADLELSADGALAAVITGAGARIACRAAV 144

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LTTGTFLRGV+H G+     GR+GD+ SN+L           GRLKTGTPARLD ++I W
Sbjct: 145 LTTGTFLRGVLHFGERTEEGGRVGDAASNALSARLRGLGLALGRLKTGTPARLDRRSIDW 204

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
           +   +   +    PFS +T +I N QI C I+ T  ETH II  N+  SA+Y G I   G
Sbjct: 205 EALPEDRGEAEPAPFSLLTGRIANPQISCRISETTPETHAIINANLHRSAVYGGRIDGAG 264

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           PRYCPSIEDK+VRF ER  HQ+FLEPEGL  + VYPNGIST+LPEE+Q  FIRT+PGL +
Sbjct: 265 PRYCPSIEDKVVRFAERPRHQVFLEPEGLEDETVYPNGISTSLPEEVQEAFIRTMPGLSR 324

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
             ++RPGYA+EYDY++P+EL   L  KK+ GLFLAGQINGTTGYEEA AQGL+AG+N+A 
Sbjct: 325 AVLLRPGYAVEYDYVDPRELTHALALKKVPGLFLAGQINGTTGYEEAGAQGLLAGVNAAL 384

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
            +     +   R + YIGV++DDL ++GV EPYRMFTSR           A++RL+    
Sbjct: 385 VAAGRSMVTVRRHEGYIGVLVDDLVTRGVSEPYRMFTSR-----------AEHRLS---- 429

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
                                 LR+    L LT + L    +   +              
Sbjct: 430 ----------------------LRADNADLRLTPRGLDWGCVGPARQAAFAALAAA---- 463

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
                   +   D    S      +  +  Y  Y  RQ  E +    ++  LIP DFD+S
Sbjct: 464 -------VATVRDGGAGSEQAAAIVAADRLYEGYLTRQESEIRARAKDDAVLIPPDFDFS 516

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  LS E++ +L  ++P  L  A ++EGMTP
Sbjct: 517 VVGGLSAEIRARLERVRPETLGVAGRLEGMTP 548


>gi|219116699|ref|XP_002179144.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409035|gb|EEC48967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 843

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 282/734 (38%), Positives = 374/734 (50%), Gaps = 120/734 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGGHAGC+AAA AA+ GA TAL+T K +TIG +SCNP+IGG+GKGHLVREIDA
Sbjct: 95  EYDVIVVGGGHAGCDAAAAAARTGARTALVTQKLATIGELSCNPSIGGIGKGHLVREIDA 154

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMG VAD  GI FR+LN +KGPAVRGPR Q DR+LY+  MQ  + +  NL +++  V
Sbjct: 155 LDGLMGNVADQGGIHFRLLNRRKGPAVRGPRAQMDRDLYQQCMQDILRNYPNLHLVEASV 214

Query: 125 AGFNTEKNIIS---------------SIVMQDNSMI-----------RCSTVVLTTGTFL 158
                +++  +                ++                  +   +   T +  
Sbjct: 215 QDLLLDQSTSAPLESMAPMQSGDLGQGLLGSTGRGSSPVDNGANVDQQARMIQAATSSSR 274

Query: 159 RGVI--------------------------------HIGKLKIPAGRM------GDSPSN 180
              I                                 +G  +   GR        + PS 
Sbjct: 275 NARIRGIVAETPDGKTIELASRAVVITTGTFLRGVLMMGHERYSGGRHLRDSEEVEPPSV 334

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ--- 237
            L  +  +F+F  GRLKTGTPAR+DG TI W     Q ++    PFS +      +    
Sbjct: 335 GLAQTLARFEFPLGRLKTGTPARIDGSTIDWSALAIQPSENPAQPFSHLRQFNEEQPPLV 394

Query: 238 -----IECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVRFGERNGH 291
                I+C  T TN ETH+++ME       Y   D K  GPRYCPSI  K+ RF +R GH
Sbjct: 395 EAGTLIDCYQTATNEETHKLVMEFEHMLPQYDGLDGKGNGPRYCPSIYKKVQRFPQRTGH 454

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
             FLEPEGLNTD+VYPNG+S   P EIQ + +RT+ GL  V IIRPGY +EYD++NP  L
Sbjct: 455 NCFLEPEGLNTDLVYPNGMSGPYPPEIQQKILRTMKGLGAVEIIRPGYDVEYDFVNPTAL 514

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD-------CICFSRT 404
             TLETK+I GL+LAGQI GTTGYEEAAAQG+VAG N+ R +                R 
Sbjct: 515 THTLETKRIGGLYLAGQICGTTGYEEAAAQGIVAGANAGRAAAAATRGDPPPLPFVIGRD 574

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKR 463
           + YIGV++DDL ++G  EPYRMFTSRAEYRISLR DNAD RLT  GM+ G +  E R   
Sbjct: 575 EGYIGVLVDDLVTRGTSEPYRMFTSRAEYRISLRADNADLRLTRKGMEYGLVKDEERMSA 634

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTS--------ISFKQDGKTRTAYEFLSYPDFSI 515
                   +     L S  L     SS             ++ G+ +TA E L  P+ ++
Sbjct: 635 LDAREFLIDDRVGKLSSFQLKVTEWSSRGGLDLMGGAQMKRKIGQKKTAEEVLGMPNVTL 694

Query: 516 QNLFSICPDARKFSSLVIE-----------------------------RLQIESSYAAYT 546
           +++  I     K   +V+E                              ++    Y +Y 
Sbjct: 695 KDVEDIMKAVSKEPDVVVETTDPLPSKEVRAMLEAMDNFVPSPASVYDTVEASVKYQSYV 754

Query: 547 GRQMIEAKEIKFEEKRLIPKDFDY--SSLPALSNELKEKLSILKPFNLLQASKIEGMTPA 604
            RQ  + +  +  +   IP D +Y    LP LS E  EKLS ++P     AS+I GMTP 
Sbjct: 755 RRQHKDMESWRRAQGLRIPPDVEYVHKYLPTLSIEELEKLSQIRPATFADASQISGMTPK 814

Query: 605 ALNLLLIYIKKNTV 618
           +L  L  ++++   
Sbjct: 815 SLIYLYHHVQRRNR 828


>gi|242222421|ref|XP_002476930.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723757|gb|EED77870.1| predicted protein [Postia placenta Mad-698-R]
          Length = 565

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/490 (43%), Positives = 293/490 (59%), Gaps = 51/490 (10%)

Query: 32  ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            L+T K   IG +SCNP++GG+GKG L+RE+DALDGL GRVAD AGIQF++LN  KG AV
Sbjct: 102 VLLTQKLDNIGELSCNPSMGGVGKGTLMREVDALDGLCGRVADQAGIQFQILNRSKGAAV 161

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-----------ISSIVMQ 140
            GPR Q DR LY+  MQ  + +  NLD+    V+    + ++           +  + + 
Sbjct: 162 WGPRAQIDRTLYKQHMQAALHNYPNLDIRSASVSDLVFDHDVGSTSAHAQWGTVGGVRLD 221

Query: 141 DNS--------MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFD 192
                      +I+CS VV+ TGTFL G IHIG  + PAGR+ ++PS  L  S     F 
Sbjct: 222 KGINAFSDSGEVIKCSQVVICTGTFLSGEIHIGMKRFPAGRINEAPSVGLSGSLRSAGFQ 281

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--RQIECGITRTNLETH 250
            GRL+TGTPARL   +I +   E+Q  D    PFSFM   ++N   QI C +T T   TH
Sbjct: 282 LGRLQTGTPARLYKDSIDFRNLEQQRGDSTPHPFSFMNSSVSNADNQILCYLTYTTPATH 341

Query: 251 RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGI 310
           ++I +N+  S       K  GPRYCPS+E K++RF +++ H ++LEPEG +++++YPNG+
Sbjct: 342 QMIRDNLHQSVHIQETKK--GPRYCPSLEAKVIRFPQKDQHLVWLEPEGYDSELIYPNGL 399

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQIN 370
           S ++PEE+Q    RT+PGLE V + RP Y +EYDY++P+EL PTLETK+I GLFLAGQIN
Sbjct: 400 SCSMPEEVQLMMYRTVPGLENVKLARPAYGVEYDYVDPRELKPTLETKRIKGLFLAGQIN 459

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
           GTTGYEEAAAQG++AGIN+   +                              YRMFTSR
Sbjct: 460 GTTGYEEAAAQGVLAGINAGMSAL----------------------------HYRMFTSR 491

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
           +EYR+++R DNAD RLT      G I + R ++F    +E   +  LLKS VL+ +   +
Sbjct: 492 SEYRMTIRSDNADLRLTEKARNAGAITDERWRQFEATREELTRVTDLLKSHVLSPQAWQN 551

Query: 491 TSISFKQDGK 500
                K DG 
Sbjct: 552 MGFDVKSDGH 561


>gi|213024279|ref|ZP_03338726.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 381

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/377 (48%), Positives = 243/377 (64%), Gaps = 1/377 (0%)

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD P
Sbjct: 1   IFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPP 60

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ- 237
           S  L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   + Q 
Sbjct: 61  SIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQHPQQ 120

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIFLEP
Sbjct: 121 VPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEP 180

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL ++ +YPNGIST+LP ++Q Q +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+
Sbjct: 181 EGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLES 240

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K I GLF AGQINGTTGYEEAAAQGL+AG+N+AR S   +    +R+ +Y+GV++DDL +
Sbjct: 241 KFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCT 300

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  
Sbjct: 301 LGTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQR 360

Query: 478 LKSLVLTSKNLSSTSIS 494
           LKS  +T    S+  ++
Sbjct: 361 LKSTWVTPSAESADEVN 377


>gi|297581979|ref|ZP_06943899.1| glucose inhibited division protein A [Vibrio cholerae RC385]
 gi|297533846|gb|EFH72687.1| glucose inhibited division protein A [Vibrio cholerae RC385]
          Length = 384

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 184/366 (50%), Positives = 238/366 (65%), Gaps = 1/366 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIE 239
           +L +   +  F   RLKTGTP R+D  ++ +   E Q  D     FSFM  +  + RQI 
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGDNPTPVFSFMGKREHHPRQIP 241

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C IT TN  TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +++ HQIF+EPEG
Sbjct: 242 CYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADKDSHQIFIEPEG 301

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           L T  +YPNGIST+LP ++Q Q +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK 
Sbjct: 302 LTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKF 361

Query: 360 ISGLFL 365
           I GLFL
Sbjct: 362 IHGLFL 367


>gi|315045095|ref|XP_003171923.1| hypothetical protein MGYG_06467 [Arthroderma gypseum CBS 118893]
 gi|311344266|gb|EFR03469.1| hypothetical protein MGYG_06467 [Arthroderma gypseum CBS 118893]
          Length = 557

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/575 (37%), Positives = 309/575 (53%), Gaps = 63/575 (10%)

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++REIDALDG+ GR  D AGIQFR+LN  KGPAV GPR Q DR LYR  M  E+ +   L
Sbjct: 1   MIREIDALDGVAGRTVDKAGIQFRILNRSKGPAVWGPRAQIDRALYRKYMLEELTNTPGL 60

Query: 118 DVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++G+VA     K            I  + ++   +I    V++TTGTFL G IHIG  
Sbjct: 61  SIVEGKVADIVVSKENVANLNGSQGEIVGVRLESGEVIPTGKVIITTGTFLGGEIHIGLD 120

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
             P+GRMG++ +  L  S  +  F  GRLKTGTP RLD KTI +   E Q  D    PFS
Sbjct: 121 AFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPPRLDRKTIDFSTLEIQPGDSPPSPFS 180

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           ++ D +       G      ET+ ++      +          GP +   I   +++   
Sbjct: 181 YLNDSVQIGDKVQGQ----AETYDLVRTGRPCTKRCDLS----GPNFGI-ITSVVMK--- 228

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
                  +EP GL                   + ++             PGY +EYDY++
Sbjct: 229 ----AYPVEPTGL-------------------YAWLGA-----------PGYGVEYDYVD 254

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L PTLETK ISGL+LAGQINGTTGYEEAAAQG++AGIN+   S     +  SR D +
Sbjct: 255 PRSLRPTLETKLISGLYLAGQINGTTGYEEAAAQGILAGINAGLASQSKPPMTLSRADGF 314

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG+MIDDL +KGV EPYRMFT+R+EYRIS R DNAD RLT  G   G + ++R ++F + 
Sbjct: 315 IGIMIDDLITKGVSEPYRMFTTRSEYRISTRSDNADMRLTAKGRAAGVVSDKRWRQFGEV 374

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP---- 523
            ++ ++L++LL++    S   +      + D   R+A+E LS+   S+ ++         
Sbjct: 375 REQMSYLQALLENTRHPSTVWARKGFPVRTDSSVRSAFELLSHNGVSLDDIIPHIDSTPG 434

Query: 524 ---DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
                  FS  +  R+ IE  YA YT RQ   A   + +E  L+P D DYS++  LS E 
Sbjct: 435 SPHSLSSFSPQIKSRMAIEGRYAPYTKRQEASALLFERDEGMLLPPDIDYSTMLGLSTEE 494

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           ++ L  ++P ++  A ++EG+TP     LL++++K
Sbjct: 495 RQVLEKVRPVSIGMARRVEGVTPVGALKLLMHVRK 529


>gi|229087971|ref|ZP_04220078.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
 gi|228695340|gb|EEL48218.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
          Length = 395

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/357 (50%), Positives = 231/357 (64%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG GHAGCEA   AA++G+ T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 7   SYDVIVIGAGHAGCEAGLAAARMGSKTLMLTINLDMVAFMPCNPSVGGPAKGIVVREIDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  +++ I    NL + QG V
Sbjct: 67  LGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNLTLCQGMV 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E ++   ++ Q  +     TVV+TTGTFLRG I +G LK  +G     PS +L  
Sbjct: 127 ERLIVEDDVCRGVITQSGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQPSITLSE 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +   +  R KTGTP R++  TI + KTE Q  D++   FSF T K    QI C +T 
Sbjct: 187 HLEELGLELVRFKTGTPPRVNSSTIDYSKTEIQPGDDKPRAFSFETTKFIMDQIPCWLTY 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+ ETHR+I  N+  SA+YSG IK  GPRYCPSIEDK+VRF ++  HQIFLEPEG NT  
Sbjct: 247 TSEETHRLIDRNLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQE 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKIS 361
           VY  G+ST+LPE++Q + ++TIPGLE V ++R GYAIEYD I P +L+PTLETKK+ 
Sbjct: 307 VYVQGLSTSLPEDVQREMLKTIPGLENVEMMRTGYAIEYDAIVPTQLWPTLETKKLK 363


>gi|71028266|ref|XP_763776.1| glucose inhibited division protein A [Theileria parva strain
           Muguga]
 gi|68350730|gb|EAN31493.1| glucose inhibited division protein A, putative [Theileria parva]
          Length = 615

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/584 (38%), Positives = 311/584 (53%), Gaps = 82/584 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---------------------- 42
            +DV+V+GGGH+G EAA  +A++GA+T LIT   S+IG                      
Sbjct: 32  KFDVLVVGGGHSGIEAATASARIGANTLLITPNLSSIGISIGFSSEILFNLVNSVIYTCV 91

Query: 43  -------------------------SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
                                     +SCNP+IGG+GKG+LV EIDALDG+MG  AD + 
Sbjct: 92  MRFRRFTKLNINSKYNKKCKIEFTGELSCNPSIGGIGKGNLVCEIDALDGVMGMCADLSA 151

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK------ 131
           I FR LN  KGPAV GPR Q DR+LY++ +++ + +  NL  +Q  V             
Sbjct: 152 ISFRCLNTSKGPAVVGPRVQIDRDLYKINLRKLLENYPNLFFLQDFVDELLLNSGDSNDT 211

Query: 132 -------------NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM---- 174
                          +  + M+D  +I+   V+LTTGTFL+G  HI K     GR+    
Sbjct: 212 VDTNTVDSDTGSTMNVEGVRMKDGGVIKSKCVILTTGTFLKGRCHISKQTYGGGRINRIT 271

Query: 175 --GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD- 231
              +S +++L N F K   +T R KTGTPARLD K+I ++  E Q +DE    FS++ + 
Sbjct: 272 GEFESAADNLSNIFNKLGINTLRFKTGTPARLDRKSINFENLEVQESDENPKFFSYLNED 331

Query: 232 -KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            K+TN+ I C  T+TN   H I+  N+ +   Y       GPRYCPSI  K+++      
Sbjct: 332 FKVTNQLINCYKTQTNERVHSIVRNNLHNLPDY---TSGLGPRYCPSISTKVMKHPGIKS 388

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
           H ++LEPEG+N+D++YPNG+S +     Q + +R I GLE V I+ P Y +EYD I+P  
Sbjct: 389 HIVWLEPEGVNSDIIYPNGLSGSFDINTQREMLRNIKGLENVKILTPAYDVEYDLIDPTN 448

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK-LDCICFSRTDSYIG 409
           L  TLE KKI+ LFLAGQI GTTGYEEA + G++AGINSA KS    +    +R + YIG
Sbjct: 449 LKYTLELKKINNLFLAGQICGTTGYEEAGSLGVIAGINSALKSLNINEPFVINRNEGYIG 508

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           V+IDDL  KG+ EPYRMFTSR+EYR+  R DN D R+   G+K G I  +++    K  +
Sbjct: 509 VLIDDLIRKGITEPYRMFTSRSEYRLQNRIDNGDVRMLIKGIKYGVIRNKKRLDLMKNNE 568

Query: 470 EYN----FLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLS 509
            +         +L      +   +            + A   + 
Sbjct: 569 NFKFMSMEEIEILSRERPETIQEAMELPGITPATAVQLANYIIK 612



 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            +  K  +     ++F +      S E  E LS  +P  + +A ++ G+TPA    L  Y
Sbjct: 555 IRNKKRLDLMKNNENFKFM-----SMEEIEILSRERPETIQEAMELPGITPATAVQLANY 609

Query: 613 I 613
           I
Sbjct: 610 I 610


>gi|258626070|ref|ZP_05720921.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581596|gb|EEW06494.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 368

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 161/368 (43%), Positives = 231/368 (62%), Gaps = 5/368 (1%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
           +Y+G I+  GPRYCPSIEDK++RF ++N HQIF+EPEGL T  +YPNGIST+LP ++Q Q
Sbjct: 1   MYAGIIEGIGPRYCPSIEDKVMRFADKNSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQ 60

Query: 322 FIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            +R++ G E  +I+RPGYAIEYD+ +P++L  T ETK I GLF AGQINGTTGYEEAAAQ
Sbjct: 61  IVRSMKGFENAHIVRPGYAIEYDFFDPRDLKQTYETKFIHGLFFAGQINGTTGYEEAAAQ 120

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           GL+AG+N++  S   +     R  +Y+GV+IDDL++ G  EPYRMFTSRAEYR+ LR DN
Sbjct: 121 GLMAGLNASLYSQDKEGWSPRRDQAYMGVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDN 180

Query: 442 ADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QD 498
           AD RLT    +LG + + R  RF + I      R  L+   +   ++    ++       
Sbjct: 181 ADLRLTEKARELGLVDDERWARFNQKIDNMAKERQRLQETWMNPNSVGVEQLNALLKTPM 240

Query: 499 GKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIK 557
            +  +  + L  P+ + + L ++         S   E+++I+  Y  Y  RQ  E ++  
Sbjct: 241 SREASGEDLLRRPEMTYELLTTLPVFTPALEDSEAAEQVEIQVKYDGYIQRQQDEIEKSL 300

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
             E   +P D DY  +  LSNE+  KLS  KP  +  AS+I G+TPAA+++LL+++KK+ 
Sbjct: 301 RHEHTKLPVDLDYKQVKGLSNEVVLKLSTTKPETIGIASRISGITPAAISILLVHLKKHG 360

Query: 618 V-KLNEIV 624
           + K  E  
Sbjct: 361 MLKKGEAA 368


>gi|296088516|emb|CBI37507.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  475 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 170/401 (42%), Positives = 251/401 (62%), Gaps = 3/401 (0%)

Query: 225 PFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
            FSF  D  I   Q+ C +TRT   TH++I EN+  +  Y G +++ GPRYCPSIEDKIV
Sbjct: 386 WFSFDPDFHIEREQMCCYLTRTTKSTHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIV 445

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF ++  HQIFLEPEG N   +Y  G ST LPE +Q   +RT+PGLE  +++RP YA+EY
Sbjct: 446 RFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEY 505

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           D++   +   +L TK+I GLF +GQINGTTGYEEAAAQGL++GIN+AR S+    I   R
Sbjct: 506 DFLPAYQCSRSLMTKQIEGLFFSGQINGTTGYEEAAAQGLISGINAARYSDGKSLIVLER 565

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             SYIG +IDDL +K + EPYRM TSR+E+R+ LR DNAD+RLTP+G ++G I +RR K 
Sbjct: 566 ESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKI 625

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +     + +  +  L+++ ++  +L+S  T +S +    + T    L  P    + L   
Sbjct: 626 YQDKQAQISQEKKRLRTVRISGGDLASDVTHLSGQPVKDSSTLESILKKPHVQYKVLDKH 685

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
                  S +  E ++I+  Y  +  RQ  + +++  ++ R +P+D DY ++  LS E +
Sbjct: 686 GFGNELLSKIEKECVEIDIKYEGFIMRQQSQLQQMARQQHRPLPEDLDYYAMTTLSLEAR 745

Query: 582 EKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           EKLS ++P  + QAS++ G++PA +  LLI ++ N  K  E
Sbjct: 746 EKLSKIRPQTIGQASRVGGVSPADITALLIILETNRRKAQE 786



 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 102/176 (57%), Gaps = 4/176 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E+
Sbjct: 71  NERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEV 130

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDV 119
           DAL G +G+VAD   +Q RVLN+ +GPAVR  R Q D+  Y L M+  +  Q    NL +
Sbjct: 131 DALGGEIGKVADRCYLQKRVLNISRGPAVRALRAQTDKRDYALQMKNIVERQAYCPNLSI 190

Query: 120 IQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            +  V      KN  +  +           +V+LTTGTF+ G I +G+  +PAGR 
Sbjct: 191 REAMVTDILLGKNDNVEGVRTFFGMDFYAPSVILTTGTFMSGKIWVGRTSMPAGRA 246


>gi|84996187|ref|XP_952815.1| glucose-inhibited division protein a-like protein [Theileria
           annulata strain Ankara]
 gi|65303813|emb|CAI76190.1| glucose-inhibited division protein a-like protein, putative
           [Theileria annulata]
          Length = 745

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/515 (43%), Positives = 308/515 (59%), Gaps = 34/515 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+GGGH+G EAA  AA++GA+T LIT   S+IG +SCNP+IGG+GKG+LV EIDA
Sbjct: 32  KFDVLVVGGGHSGIEAATAAARVGANTLLITPDLSSIGELSCNPSIGGIGKGNLVCEIDA 91

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDG+MG  AD + I FR LN  KGPAV GPR Q DR+LY++ +++ + +  NL  +Q  V
Sbjct: 92  LDGIMGMCADLSAISFRCLNTSKGPAVVGPRVQIDRDLYKINIRKLLENYNNLSFLQALV 151

Query: 125 AGFNT---------------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
                                     ++  +  I ++D  +I   TV+LTTGTFL+G  H
Sbjct: 152 DELILDYSNTSENNNSLEINNIVDVKDQVSVKGIKLKDGQIINSKTVILTTGTFLKGRCH 211

Query: 164 IGKLKIPAGRM------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
           I K     GR+       +  S++L N F K    T R KTGTPARLD K+I +++ E Q
Sbjct: 212 ISKETHKGGRINRISGKFEPSSDNLSNVFSKLGIKTLRFKTGTPARLDRKSINYEELEVQ 271

Query: 218 FADERLIPFSFMTD--KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
            +DE    FS++ +  K+ N  I C  T+TN   H I+  N+ +   Y       GPRYC
Sbjct: 272 KSDENPKFFSYLNEDFKVENELINCYKTQTNEVVHNIVRNNLHNLPDY---TSGLGPRYC 328

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
           PSI  K+ +      H ++LEPEG+N+D++YPNG+S +   E Q + ++ I GLE V ++
Sbjct: 329 PSISTKVTKHPSIKSHIVWLEPEGINSDIIYPNGLSGSFDIEAQLEILKNIKGLENVKVL 388

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
            P Y +EYD I+P  L  TLE KKI  +FLAGQI GTTGYEEA + G++AGINS+ KS  
Sbjct: 389 TPAYDVEYDLIDPTNLKYTLELKKIKNMFLAGQICGTTGYEEAGSLGIIAGINSSLKSLN 448

Query: 396 -LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             +    +R + YIGV+IDDL  KG+ EPYRMFTSR+EYR+  R DN D R+   G+K G
Sbjct: 449 VDEEFIINRNEGYIGVLIDDLIRKGISEPYRMFTSRSEYRLQNRIDNGDVRMLIKGIKYG 508

Query: 455 CIGER-RQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            I  R R +       +   + S+LKS+  T    
Sbjct: 509 VIKNRKRLELMKTKYIKSIIIISVLKSVSNTLNYW 543



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 13/160 (8%)

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF---LSYP-------DFSIQNLFS 520
                S L +L  ++  L S +       K          + Y        +   +NLF 
Sbjct: 585 IEKFSSNLFNLPFSNHELKSINYLLNYTNKEENEDIMNSIIKYYLRESNKLEIESENLFK 644

Query: 521 ICPDA-RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS--SLPALS 577
                       VI  ++ ++ Y+++  R   + +         I +D  Y+  +   +S
Sbjct: 645 FLKSLINNVKENVISFIEAQAKYSSFIKRYNQQYQRAMSGRTIHINQDIQYNHENFKFMS 704

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
            E  E LS  KP  + +A ++ G+TPA    L  YI K  
Sbjct: 705 MEEIEILSREKPQTIQEAMELPGVTPATAVQLANYIIKEK 744


>gi|326435253|gb|EGD80823.1| hypothetical protein PTSG_11724 [Salpingoeca sp. ATCC 50818]
          Length = 540

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/461 (40%), Positives = 284/461 (61%), Gaps = 8/461 (1%)

Query: 167 LKIPAGRMGDSPSNSLFNSFMK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
            +IPAGR G+ P+  L         F  GRL+TGTP RL   +I +    +Q ++   +P
Sbjct: 78  QRIPAGRKGEGPTTRLAQVLQDDCQFRMGRLRTGTPPRLHVDSIDFSGMVEQKSEYPPVP 137

Query: 226 FSFMTDKITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
           FSF+TD++      + C +T TN E H I+ E +  +     ++   GPRYCPSIE K++
Sbjct: 138 FSFLTDQVDQIDNLVSCHMTYTNAEAHAIVHETLHENCHIQEEV--TGPRYCPSIESKVL 195

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RF +R+ HQ++LEPEGLN++V+YPNGIS  +PEE Q +FIR +PGL+   I++PGY + Y
Sbjct: 196 RFTDRDQHQVWLEPEGLNSEVIYPNGISMTMPEEAQQRFIRLMPGLQNATIVQPGYGVAY 255

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           DYI+P+EL  TLETKK++GLFLAGQINGTTGYEEAA+QG++AG+N+A  +  L  +   R
Sbjct: 256 DYIDPRELQHTLETKKVAGLFLAGQINGTTGYEEAASQGIIAGVNAASAARALPPLVLDR 315

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             +YIGV+IDDL + GV EPYRMFTSRAEYR+++R DNAD RLT +G K GC+ E R ++
Sbjct: 316 AQAYIGVLIDDLVTNGVSEPYRMFTSRAEYRMTIRADNADVRLTELGYKAGCVSEDRYQQ 375

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLS---STSISFKQDGKTRTAYEFLSYPDFSIQNLFS 520
                 +       +++  L+        S       DGK R+A + +      ++ L +
Sbjct: 376 SKATTDQLVACLDAMRACSLSVHEWEKFVSLQKPMAHDGKQRSALDLVGKRFVDMEQLVT 435

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNEL 580
           + P+ +     + ER+ IE+ Y  +  +Q    ++ + EE+ ++P+D DY  +P+L  E 
Sbjct: 436 MVPELKHADHSMRERIFIEALYDQFKKKQESSIRQYRKEEQLVLPEDLDYDKVPSLPREA 495

Query: 581 KEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
            + L   +P  L  AS++ G++ A+   LL +++K  +  N
Sbjct: 496 VDALKAARPATLGAASRLRGVSAASCITLLTHVRKRKMAAN 536



 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGGHAGCEAAA +A++GA T L+T K  TIG+    PA G  G+G   R  
Sbjct: 37  NVHYDVVVIGGGHAGCEAAAASARVGARTVLVTQKKDTIGTQRI-PA-GRKGEGPTTRLA 94

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
             L             QFR+  ++ G     PR   D   + 
Sbjct: 95  QVL---------QDDCQFRMGRLRTGTP---PRLHVDSIDFS 124


>gi|290987034|ref|XP_002676228.1| predicted protein [Naegleria gruberi]
 gi|284089829|gb|EFC43484.1| predicted protein [Naegleria gruberi]
          Length = 471

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/473 (46%), Positives = 302/473 (63%), Gaps = 36/473 (7%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           I++GGGH+GCEA   A    A T +ITH   TIG +SCNP++GG+GKG LV+E+DAL GL
Sbjct: 1   IIVGGGHSGCEAVNAALFHNADTLMITHSKDTIGVLSCNPSVGGVGKGILVKEVDALGGL 60

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVA 125
           MG+V+D A I + VLN+ KGPAV GPR Q DR +YR  MQ+          L +I G V 
Sbjct: 61  MGKVSDYAMIHYNVLNLSKGPAVYGPRGQMDRYIYRNTMQKVFNEYTMKHKLKIIDGSVD 120

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI-GKLKIPAGRM----GDSPSN 180
              T+   I  +++++   I   +VV+TTGTFLRG IHI  +++ P GR+     +    
Sbjct: 121 NLITKNGKIQGVILKNGQKIYAKSVVITTGTFLRGEIHIGTQVRFPGGRISEIGTERTCG 180

Query: 181 SLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-------- 231
           SL ++F  +F F+ GR+KTGTP RL   +I WD   +Q + + + PFSF  D        
Sbjct: 181 SLADTFYNEFKFEMGRMKTGTPPRLHRNSINWDILTEQPSTKFIEPFSFEHDENTFYGTR 240

Query: 232 -KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
              +   + C  T TN +TH II  N    A         GPRYCPSIE K+ RF +R  
Sbjct: 241 VPHSQPHMMCYETETNEKTHEIIRSNTDELA--DEVRFGNGPRYCPSIEIKVTRFPQRTS 298

Query: 291 HQIFLEPEGLNT--------------DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           H+I+LEPEG  T              +V+YPNGIS++LP E Q +F++T+ GL++V +++
Sbjct: 299 HRIWLEPEGHITNKDEAKKLPYNHYANVIYPNGISSSLPPEKQLEFLKTMKGLDQVEMLQ 358

Query: 337 PGYAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           PGYA+ YD+++PK E+  TL+T K  GLFLAGQINGTTGYEEAAAQG++AG+N+A  +  
Sbjct: 359 PGYAVAYDFVSPKVEISHTLQTHKCQGLFLAGQINGTTGYEEAAAQGIIAGMNAAIYARG 418

Query: 396 -LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
             +     R+++YIGV+IDDL ++GV EPYR+FTSR+EYR+ LR DNAD RLT
Sbjct: 419 DNEPFILDRSEAYIGVLIDDLVTRGVDEPYRVFTSRSEYRLMLRADNADLRLT 471


>gi|313897026|ref|ZP_07830573.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974473|gb|EFR39941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 397

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 163/390 (41%), Positives = 244/390 (62%), Gaps = 5/390 (1%)

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           MT+++   Q+ C +T TN  TH +I  N+  + + +G I+  GPRYCPS+E KI RF ++
Sbjct: 1   MTEEMPKEQVRCWLTYTNAATHEVIRVNLHRAPMANGVIEGIGPRYCPSVETKIARFPDK 60

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             HQ+FLEPEGL+T+ +Y  G+ST+LP ++Q +F+RTI GLE   I+RPGYAIEYD  +P
Sbjct: 61  ERHQLFLEPEGLHTNELYVQGMSTSLPTDVQEEFLRTIAGLEHARIMRPGYAIEYDCFDP 120

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
             L P+L  K ++GL+  GQ NGT+GYEEAAAQGL+AGIN+AR+    + +   R+D YI
Sbjct: 121 LGLEPSLAVKGVAGLYSCGQANGTSGYEEAAAQGLIAGINAAREIAGEEPLILGRSDGYI 180

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           GV+IDDL +KG  EPYRM TSRAEYR+ LR DNAD RLTP+G ++G + + R  +F    
Sbjct: 181 GVLIDDLVTKGTEEPYRMMTSRAEYRLILRQDNADLRLTPVGHEIGLVSDARWAKFTAKR 240

Query: 469 QEYNFLRSLLKSLVLTSKNLSSTSIS---FKQDGKTRTAYEFLSYPDFSIQNLFSICPDA 525
                   LL++  LT    +   ++                L   + S   L  I  D 
Sbjct: 241 DAIEAALHLLETTKLTPDAATEGRLADAGLLPLRTPMNLAALLRR-EGSYDVLARIF-DL 298

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
              +  V E ++I   Y  Y  +Q  +   ++  E+R IP++ DY+++ +L  E +EKL+
Sbjct: 299 PILADDVKEEVEITVRYDGYIRKQREQIARMERLERRRIPEEIDYAAITSLRLEAQEKLA 358

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
            ++P ++ QAS+I G++PA +++LL+Y++K
Sbjct: 359 AVRPHSIGQASRISGVSPADVSVLLVYLEK 388


>gi|163785117|ref|ZP_02179822.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879615|gb|EDP73414.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 376

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/373 (49%), Positives = 241/373 (64%), Gaps = 10/373 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DV+VIGGGHAG EAA  +AKLG  TALIT     +G M CNPAIGG+ KG +VRE
Sbjct: 3   YDTDFDVVVIGGGHAGIEAALASAKLGVKTALITLDKEKVGLMPCNPAIGGIAKGIVVRE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDA  G MG+  D  G+Q+++LN +KGPAV+ PR QAD+E YR  M  +  + ENL VI+
Sbjct: 63  IDAFGGEMGKAIDTTGLQYKMLNTRKGPAVQSPRAQADKEEYRKYMVNKTQNTENLTVIE 122

Query: 122 GEVAGFNTEKN--IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           GE      +     +  + +  N  I+  +VV+TTGTFL GVIHIG  + PAGRM + P+
Sbjct: 123 GEATNIFLKPYSNEVEGVEIDGNIKIKAKSVVVTTGTFLDGVIHIGDKQFPAGRMDEKPA 182

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI------ 233
             L + + +  F   R KTGTPARLD  TI W   E+   DE    FSF T+ +      
Sbjct: 183 QKLPDFYKEHGFPLVRFKTGTPARLDKNTINWSILEEALGDEPPPKFSFWTEPVGSYWFK 242

Query: 234 --TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
                Q+ C IT T  ETH+II +N+  +A+Y G I   GPRYCPSIEDKIV+F  +  H
Sbjct: 243 EGQKEQVSCYITYTTEETHKIIRKNLHRTALYGGAITGVGPRYCPSIEDKIVKFENKARH 302

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            ++LEPE  +   +YPNG+ST+LPEE+Q Q  R+IPGLE V +++P YAIEYD + P EL
Sbjct: 303 TVWLEPETRDGISIYPNGLSTSLPEEVQWQMYRSIPGLENVVLLKPAYAIEYDVVPPTEL 362

Query: 352 FPTLETKKISGLF 364
           +PTLETKK+ GL+
Sbjct: 363 YPTLETKKVRGLY 375


>gi|23009716|ref|ZP_00050662.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Magnetospirillum magnetotacticum MS-1]
          Length = 389

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 246/380 (64%), Positives = 295/380 (77%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIV+GGGHAG EAAA AA++GA TAL+TH+ +TIG+MSCNPAIGGLGKGHLVRE+DA
Sbjct: 7   SYDVIVVGGGHAGVEAAAAAARVGARTALVTHRAATIGAMSCNPAIGGLGKGHLVREVDA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGLMGRVADAAGIQFR+LN +KGPAVRGPRTQADR LY  AMQR +     L VI+GE 
Sbjct: 67  LDGLMGRVADAAGIQFRLLNRRKGPAVRGPRTQADRALYAAAMQRAVAETPGLTVIEGEA 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 +  ++  ++ D   +  + VV+TTGTFLRG+IHIG+ +IPAGR+G+ P+  L  
Sbjct: 127 EDLVVAEGRVAGAILTDGRTLTAAAVVITTGTFLRGLIHIGERQIPAGRVGEGPAVGLAQ 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +  +  F  GRLKTGTPARLDG+TI W   E Q ADE  +PFS +T++IT  QI CGITR
Sbjct: 187 TLDRHGFRLGRLKTGTPARLDGRTIDWASLEMQHADEDPVPFSTLTERITTPQIACGITR 246

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T   TH +I  N+  S +YSG I S GPRYCPSIEDK+VRFG+R GHQIFLEPEGL+   
Sbjct: 247 TTQATHDLIRANLHRSPMYSGGISSRGPRYCPSIEDKVVRFGDREGHQIFLEPEGLDDPT 306

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           VYPNGISTALPEE+Q   I +IPGLE+  I+RPGYAIEYDY++P+EL  TL+ K++ GLF
Sbjct: 307 VYPNGISTALPEEVQAGIIASIPGLERTRILRPGYAIEYDYVDPRELDATLQAKRLPGLF 366

Query: 365 LAGQINGTTGYEEAAAQGLV 384
           LAGQINGTTGYEEAA QGL 
Sbjct: 367 LAGQINGTTGYEEAAGQGLS 386


>gi|255026480|ref|ZP_05298466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-003]
          Length = 344

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/337 (45%), Positives = 208/337 (61%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +EN+ + QG V
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLV 127

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  +   ++    ++    TVV+TTGTF RG I +G+L+  +G     PS  L  
Sbjct: 128 DRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSE 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F+  R KTGTP R+   TI + KTE+Q  D+    FSF T ++   Q+ C +T 
Sbjct: 188 HLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTY 247

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           TN  TH II  N+  S +++   K  G RYCPSIEDKIVRF ++  HQIFLEPEG NT+ 
Sbjct: 248 TNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEE 307

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           VY  G+ST+LPEE+Q + +RTIPGLE V ++R GYAI
Sbjct: 308 VYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAI 344


>gi|48243619|gb|AAT40770.1| putative glucose-inhibited division protein [Haemophilus
           influenzae]
          Length = 330

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/328 (51%), Positives = 214/328 (65%), Gaps = 1/328 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +YDVIVIGGGHAG EAA   A++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E
Sbjct: 3   YTETYDVIVIGGGHAGTEAALAPARMGFKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKE 62

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DA+ GLM   AD AGIQFR LN  KGPAVR  R QADR LYR A++  + +Q NLD+ Q
Sbjct: 63  VDAMGGLMAHAADKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQ 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E      E++ ++ +  +   + R  +VVLT GTFL G IHIG      GR GD  S +
Sbjct: 123 QEATDILIEQDRVTGVSTKMGLIFRAKSVVLTAGTFLAGKIHIGLENYEGGRAGDPASVN 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR-QIEC 240
           L +          RLKTGTP R+D +TI +D   KQ  DE L  FSFM     +  QI C
Sbjct: 183 LSHRLRDLGLRVDRLKTGTPPRIDARTINFDILAKQHGDEVLPMFSFMGSVDDHPQQIPC 242

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQI+LEPEGL
Sbjct: 243 YITYTNEQTHEVIRNNLDRSPMYTGVIEGIGPRYCPSIEDKVMRFSDRNSHQIYLEPEGL 302

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPG 328
            ++ VYPNGIST+LP ++Q   + ++ G
Sbjct: 303 TSNEVYPNGISTSLPFDVQMGIVNSMKG 330


>gi|305431781|ref|ZP_07400948.1| glucose inhibited division protein A [Campylobacter coli JV20]
 gi|304444865|gb|EFM37511.1| glucose inhibited division protein A [Campylobacter coli JV20]
          Length = 382

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/361 (47%), Positives = 234/361 (64%), Gaps = 1/361 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EA+A AA++G  T L+T     IG+ SCNPAIGGL KGHLV+E+DA+
Sbjct: 2   FDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNPAIGGLAKGHLVKELDAM 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLMG + D AGIQFR+LN  KG AVRG R Q D + YR+  + ++L  +NL++ Q +V 
Sbjct: 62  GGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDKYRIVARNKLLKLKNLEISQEQVC 121

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E   +  +     +      V+LTTGTFL G+IH+G+ K+ AGR+G+  S +L  +
Sbjct: 122 ELIYENGSVVGVKTNLQNTYEAKKVILTTGTFLNGLIHVGENKLTAGRVGELASVNLGQN 181

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +      GRLKTGT  R+D K+I +D  E Q+ D+    FSF T      Q+ C I RT
Sbjct: 182 LLSTSLKMGRLKTGTCPRVDAKSIDFDVLEIQYGDQNPKAFSFRTKNFNPIQLPCYIART 241

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           N  TH II  N   + +++G I+  GPRYCPSIEDKI RF ++  H +F+EP+ ++    
Sbjct: 242 NTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDKESHHLFIEPQTIDATEY 301

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG ST+LP E+Q Q +R++ G E+  I R GYAIEYDYI P EL+ TLETKK+  +F+
Sbjct: 302 YINGFSTSLPYEVQTQMLRSVKGFEEAKITRFGYAIEYDYIEPTELYHTLETKKLK-IFI 360

Query: 366 A 366
           A
Sbjct: 361 A 361


>gi|119569145|gb|EAW48760.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
          Length = 594

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/400 (40%), Positives = 247/400 (61%), Gaps = 12/400 (3%)

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +   Q+ C +T TN     I+++N+  ++         GPRYCPSIE K++RF  R  HQ
Sbjct: 177 VLEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESKVLRFPNR-LHQ 233

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ 
Sbjct: 234 VWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQIT 293

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+I
Sbjct: 294 PSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLI 353

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEY 471
           DDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R        
Sbjct: 354 DDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSL 413

Query: 472 NFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARK 527
               S+LKS+   S                     A + L Y +  + +L    P+  +K
Sbjct: 414 EEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKK 473

Query: 528 FS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEK 583
           ++    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EK
Sbjct: 474 YTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREK 533

Query: 584 LSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           L   +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 534 LHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 573



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 100/145 (68%), Gaps = 8/145 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQD 141
                       T K  +S +V++D
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLED 180


>gi|332824610|ref|XP_003311452.1| PREDICTED: protein MTO1 homolog, mitochondrial isoform 3 [Pan
           troglodytes]
          Length = 595

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/473 (36%), Positives = 263/473 (55%), Gaps = 17/473 (3%)

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +H   L    G         +     K +     L T      +G       TE +   E
Sbjct: 109 VHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEP--E 166

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                      +   Q+ C +T TN     I+++N+  ++         GPRYCPSIE K
Sbjct: 167 HTGKCRVSGVVLPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETT--RGPRYCPSIESK 224

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           ++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY +
Sbjct: 225 VLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGV 283

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           +YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      
Sbjct: 284 QYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVV 343

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERR 460
           SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R
Sbjct: 344 SRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQR 403

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQN 517
            +R            S+LKS+   S                     A + L Y +  + +
Sbjct: 404 YERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDS 463

Query: 518 LFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++ 
Sbjct: 464 LAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIR 523

Query: 575 --ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK---KNTVKLNE 622
             +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K   +    +NE
Sbjct: 524 DVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQQRQAAMNE 576



 Score =  163 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/143 (52%), Positives = 98/143 (68%), Gaps = 8/143 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVM 139
                       T K  +S +V+
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVL 178


>gi|18920702|gb|AAL82394.1|AF469110_1 MTO1 isoform 1 [Homo sapiens]
          Length = 595

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/471 (36%), Positives = 263/471 (55%), Gaps = 14/471 (2%)

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +H   L    G         +     K +     L T      +G       TE +   E
Sbjct: 109 VHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEP--E 166

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                      +   Q+ C +T TN     I+++N++ ++         GPRYCPSIE K
Sbjct: 167 HTGKCRVSGVVLPEDQLPCYLTHTNPRVDEIVLKNLQLNSHVKETT--RGPRYCPSIESK 224

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           ++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY +
Sbjct: 225 VLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGV 283

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
           +YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      
Sbjct: 284 QYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVV 343

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERR 460
           SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R
Sbjct: 344 SRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQR 403

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQN 517
            +R            S+LKS+   S                     A + L Y +  + +
Sbjct: 404 YERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDS 463

Query: 518 LFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
           L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++ 
Sbjct: 464 LAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIR 523

Query: 575 --ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
             +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 524 DVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 574



 Score =  163 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/143 (52%), Positives = 98/143 (68%), Gaps = 8/143 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVM 139
                       T K  +S +V+
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVL 178


>gi|190344036|gb|ACE75814.1| protein MTO1 homolog, mitochondrial precursor (predicted) [Sorex
           araneus]
          Length = 549

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 192/427 (44%), Positives = 264/427 (61%), Gaps = 24/427 (5%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DALDGL GRV D +GI ++VLN +KGP
Sbjct: 62  RTLLLTHRVETIGQMSCNPSFGGIGKGHLMREVDALDGLCGRVCDQSGIHYKVLNRRKGP 121

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE--------KNIISSIVMQD 141
           AV G R Q DR+LY+  MQ+E+L    L V +G V     E        K  +S +V+ D
Sbjct: 122 AVWGLRAQIDRKLYKQNMQKELLGTPLLTVQEGAVEDLILEEAEPGHPGKCRVSGVVLVD 181

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
            S +   +VVLTTGTFLRG++ IG    PAGR+GD PS  L  +  K  F  GRLKTGTP
Sbjct: 182 GSAVYADSVVLTTGTFLRGMVVIGLETHPAGRLGDQPSIGLAQTLEKLGFMVGRLKTGTP 241

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---NRQIECGITRTNLETHRIIMENIK 258
            R+  ++I +    KQ  D    PFSF+ + +      Q+ C +T TN +   I++EN+ 
Sbjct: 242 PRIAKESINFSILNKQEPDNPSTPFSFINETVWIKPEDQLPCYLTHTNPKVDEIVLENLH 301

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
            ++         GPRYCPSIE K++RF  R  HQ++LEPEGL++D++YP G+S  LP E+
Sbjct: 302 LNSHIKETT--RGPRYCPSIESKVLRFPNR-LHQVWLEPEGLDSDLIYPQGLSVTLPAEL 358

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEA 378
           Q + I  I GLEK  +++PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEA
Sbjct: 359 QEKIITCIRGLEKAKMVQPGYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTGYEEA 418

Query: 379 AAQG--LVAGINSARKSNKLDCICFSRTDSYIGVMID-----DLTSKGVLEPYRMFTSRA 431
           AAQ    +AG +   K  K   +C S   S + V+       +L +K V EP + +T   
Sbjct: 419 AAQSPPCIAGCDPKSKQTKQKQLCLS---SALDVLKYEEVDMELLAKAVPEPLKKYTGCR 475

Query: 432 EYRISLR 438
           E    L+
Sbjct: 476 ELAERLK 482



 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 503 TAYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
           +A + L Y +  ++ L    P+  +K++    + ERL+IE++Y +    Q  E KE++ +
Sbjct: 445 SALDVLKYEEVDMELLAKAVPEPLKKYTGCRELAERLKIEATYESVLLHQQQEIKEVQRD 504

Query: 560 EKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEG 600
           E   +P+D DY +L   +LS+E++EKL + +P     A+++ G
Sbjct: 505 EALQLPRDLDYLTLRDISLSDEVREKLHLSRPQTQSSANQVSG 547


>gi|312095432|ref|XP_003148355.1| glucose inhibited division protein A [Loa loa]
 gi|307756479|gb|EFO15713.1| glucose inhibited division protein A [Loa loa]
          Length = 468

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 189/469 (40%), Positives = 262/469 (55%), Gaps = 35/469 (7%)

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---T 234
            ++ L  +F +  F  GR +TGTPARL  KTI + K   Q  D + IPFSF+T+ +    
Sbjct: 1   ANSKLSETFKRLGFKLGRFRTGTPARLFKKTIDFSKFAPQLPDRKPIPFSFLTEHVWLPH 60

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           ++Q+   +  TN     +I+++         +  + GPRYCPS+E K++RF   N H+IF
Sbjct: 61  HQQLPSYLGFTNNRLAEVILKHFNECNYIRSE--ANGPRYCPSLESKVIRFPHLN-HRIF 117

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           LE EGL++D++YP G+S     E+Q +  R IPGLE V I   GY +EYDY+NPK+L  T
Sbjct: 118 LEHEGLDSDLIYPQGMSMTFAPEVQLEVYRCIPGLENVEISETGYGVEYDYVNPKQLQST 177

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L+TK + GLFLAGQINGTTGYEEAAAQG+VAGIN+A  +         RT+ YIGV+IDD
Sbjct: 178 LQTKAVEGLFLAGQINGTTGYEEAAAQGIVAGINAAASTRNKKPFVIDRTEGYIGVLIDD 237

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LTS G  EPYRMFTSRAE R+ LRPDNAD RLT  G + G + E R   F K +  YN  
Sbjct: 238 LTSLGTSEPYRMFTSRAELRLHLRPDNADIRLTEKGYQHGAVSEHRHNHFLKMVSAYNET 297

Query: 475 RSLLKSLVLTSKNLSST--SISFKQDGKTRTAYEFLSYPDFSIQNLFSICP-DARKF--S 529
           R LLKS+             +   +  K  +A++ L   +     +    P +  +   +
Sbjct: 298 RDLLKSVKYPMNFWRKFIPRLENARTTKVYSAFDLLCRYEIDFMEIRKAAPVELERLLEN 357

Query: 530 SLVIERLQIESSYAAYTG------------------------RQMIEAKEIKFEEKRLIP 565
             +  RL+IE+ Y  Y                          R  ++ ++I+ E   +IP
Sbjct: 358 DEIEHRLKIEAFYHFYLDKSLIFTSLVDIQLLKCEHAFLLKSRHFMKIEQIRKECATVIP 417

Query: 566 KDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +FDYS L ++S E KE L   +P NL  AS++ G T  AL  LL ++K
Sbjct: 418 DNFDYSKLNSISAECKENLEFWRPQNLAAASRVPGATTEALIELLNFLK 466


>gi|298704862|emb|CBJ28379.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 808

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/366 (55%), Positives = 245/366 (66%), Gaps = 12/366 (3%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L+T K  TIG +SCNP+IGG+GKGH+VRE+DALDG+MGRV D AGI FR+LN +KGPA
Sbjct: 30  TVLVTQKKETIGELSCNPSIGGIGKGHIVREVDALDGVMGRVIDRAGIHFRMLNRRKGPA 89

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           VRGPR QADR+LYR AMQ E+    NL V +G V     E   I  IV  D + I C  V
Sbjct: 90  VRGPRAQADRDLYRTAMQEEMHGTPNLSVFEGSVEDVLLEGEAIKGIVTADGTEIACKGV 149

Query: 151 VLTTGTFLRGVIHIGKLKIPAGR------MGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           V+TTGTFLRG  +IG+    AGR        + PS  L  +  +F F  GRLKTGTP RL
Sbjct: 150 VITTGTFLRGKCYIGQEWYWAGRHLRDSAHVEPPSVGLAETLERFKFPLGRLKTGTPPRL 209

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTD----KITNRQIECGITRTNLETHRIIMENIKHS 260
           DG TI W   E Q ++   +PFS+M       + ++ I C  T TN ETHRI++ N    
Sbjct: 210 DGNTINWGILEAQPSEVPPLPFSYMNALTGVSMADKLISCAKTYTNEETHRIVIANGHKL 269

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
              S D    GPRYCPSI  K+ RF +R  H  FLEPEGLNT+VVYPNG+S   P +IQ 
Sbjct: 270 PEPSVD--GVGPRYCPSIFKKVERFPDRLQHLSFLEPEGLNTNVVYPNGMSGPFPADIQL 327

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           Q +R++ GLE+V IIRPGY +EYDY++P+    TLETKKI GL+LAGQI GTTGYEEAAA
Sbjct: 328 QVMRSMKGLEEVEIIRPGYDVEYDYVDPRSCRHTLETKKIKGLYLAGQICGTTGYEEAAA 387

Query: 381 QGLVAG 386
           QG+VAG
Sbjct: 388 QGIVAG 393



 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 119/304 (39%), Gaps = 71/304 (23%)

Query: 385 AGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
            G N+  K+         R + YIGV++DDL +KG  EPYRMFTSRAEYR+ +R DNAD 
Sbjct: 461 TGANAGLKAVGRPEFTVGRDEGYIGVLVDDLVTKGADEPYRMFTSRAEYRLYMRADNADL 520

Query: 445 RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK-----QDG 499
           RLT  G + G +GE R +         +     LK   LT        +  +      DG
Sbjct: 521 RLTAKGYEAGIVGEERMEFMMAREAAVSESLYELKRFSLTVGGWQGYGLDLQFGNKGADG 580

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKFS------------------------------ 529
           + + A E +  PD  ++ + +   D                                   
Sbjct: 581 RRKNAAEMVQLPDVPLEMVEAAMRDTHAQDRVDELRSREKALDAAVKAMGVEATLKDIGW 640

Query: 530 SLVIE-----RLQIESSYA--------------AYTGRQMIEA---------KEIKFEEK 561
             V E      +  +   A                  R+ +EA         +++K  E 
Sbjct: 641 DQVAEGRDPLEVLEDVREASARELSKVSTFERTPDFARETVEASCKYMNYMDRQVKEMES 700

Query: 562 R------LIPKDFDY--SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
                   IP D  Y    LP++S E  EKL+ ++P     AS+++G+TP +L  L  ++
Sbjct: 701 WRRNQEFRIPADIQYTHDLLPSMSAEELEKLNTVRPETFAAASQMQGITPHSLVYLYNHV 760

Query: 614 KKNT 617
            + +
Sbjct: 761 TRKS 764


>gi|56808373|ref|ZP_00366128.1| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Streptococcus pyogenes M49 591]
          Length = 345

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/338 (43%), Positives = 210/338 (62%), Gaps = 4/338 (1%)

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
           VRF ++  HQ+FLEPEG +T+ VY  G+ST+LPE++Q   I +I GLEK  ++R GYAIE
Sbjct: 1   VRFADKERHQLFLEPEGRDTEEVYVQGLSTSLPEDVQKDLIHSIKGLEKAEMMRTGYAIE 60

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
           YD + P +L  TLETK ISGLF AGQ NGT+GYEEAA QGL+AGIN+A K      +   
Sbjct: 61  YDIVLPHQLRATLETKLISGLFTAGQTNGTSGYEEAAGQGLIAGINAALKVQGKPELILK 120

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R+D+YIGVMIDDL +KG LEPYR+ TSRAEYR+ LR DNAD RLT IG  +G + + R K
Sbjct: 121 RSDAYIGVMIDDLVTKGTLEPYRLLTSRAEYRLILRHDNADMRLTEIGRDIGLVDDERWK 180

Query: 463 RFAKYIQEYNFLRSLLKSLVLTSKNLSS---TSISFKQDGKTRTAYEFLSYPDFSIQNLF 519
            F     +++     L S+ L     ++     + FK      TA EF+  P+       
Sbjct: 181 AFEIKKNQFDNELKRLNSIKLKPVKATNDRVQELGFKPLTDAMTAKEFMRRPEIDYATAV 240

Query: 520 SIC-PDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
           S   P A    + +IE L+ E  Y  Y  + + +  ++K  E++ IP + D+ ++ +++ 
Sbjct: 241 SFVGPAAEDLDAKIIELLETEIKYEGYIRKALDQVAKMKRMEEKRIPANIDWDAIDSIAT 300

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           E ++K   + P  + QAS+I G+ PA +++L+IY++ N
Sbjct: 301 EARQKFKKINPETIGQASRISGVNPADISILMIYLEGN 338


>gi|68074703|ref|XP_679268.1| glucose inhibited division protein A [Plasmodium berghei strain
           ANKA]
 gi|56499976|emb|CAI00294.1| glucose inhibited division protein A homologue, putative
           [Plasmodium berghei]
          Length = 863

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 221/578 (38%), Positives = 298/578 (51%), Gaps = 89/578 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIVIGGGH GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EI
Sbjct: 8   EKKYDVIVIGGGHGGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++ 
Sbjct: 68  DALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILEN 127

Query: 123 EVAGFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                  E ++                +  I  + +       V+LTTGTFL G+ HIGK
Sbjct: 128 TAHSLLIENSMTRNDSTNMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGICHIGK 187

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFD-FDTGRLKTGTPA---------------------RL 204
            K   GR+         N        ++ ++K  T                        +
Sbjct: 188 DKYKGGRIKRILGKGKDNQLTDAGTINSSKIKKETNKNKMQKINDIHNCIGNNNDNKNEM 247

Query: 205 DGKTIIWDKTEK-------QFADERL-----------------IPFSFMTDKITNRQIEC 240
           +  +I ++  E+       Q  +                    I F  +  + T ++   
Sbjct: 248 EPNSIFYNLIEESTKNIATQLKENNFEIKRMKTGTPPRLCKNSINFDILEKEGTEKKHPF 307

Query: 241 GITRTNL------------------ETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDK 281
             +  N                   +TH ++++ +     +   D    GPRYCPSI  K
Sbjct: 308 YFSFLNSNKINNNKTLPCYKTYTNIKTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKK 367

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           + +F E+  H I+LEPEG N  ++YPNG+S+A P   Q + I +I GLE   I+ P Y +
Sbjct: 368 VTKFSEKKKHIIWLEPEGFNNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDV 427

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI-- 399
           EY Y+NPK L  TLETK I+GLFL+GQI GTTGYEEAA QG+VAGIN+A  S K   I  
Sbjct: 428 EYFYVNPKCLNYTLETKIINGLFLSGQICGTTGYEEAACQGIVAGINAALNSLKKKNINI 487

Query: 400 ------CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
                   +R DSYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDNAD RLTP   KL
Sbjct: 488 SSINNFVLTRNDSYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNADIRLTPKVAKL 547

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           G   + R           N + S+ K   L +      
Sbjct: 548 GIASKERLYILNHKYYSVNKIISVFKKSTLNNSENQKL 585



 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS- 572
           +   ++++  +    ++ V+E    E  Y++Y  +Q+ E  +IK      IPK   Y   
Sbjct: 748 NYDIIYNLNFNEILINNSVLETACAEVKYSSYLKKQINEINKIKNNFNLAIPKTIKYDRN 807

Query: 573 -LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
             P LSNE  EKL+  +P NL +A+KIEG+T + +  L  YI
Sbjct: 808 NFPYLSNEEIEKLTKFRPSNLNEANKIEGVTMSGIYYLYHYI 849


>gi|221061885|ref|XP_002262512.1| Glucose inhibited division protein A homologue [Plasmodium knowlesi
           strain H]
 gi|193811662|emb|CAQ42390.1| Glucose inhibited division protein A homologue,putative [Plasmodium
           knowlesi strain H]
          Length = 846

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 191/529 (36%), Positives = 262/529 (49%), Gaps = 82/529 (15%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDK 232
           + +S + S+ N   +  F+  R+KTGTP RL   +I +   E++ ++ E    FSF+   
Sbjct: 318 LVESSTQSISNQLREHRFEIKRMKTGTPPRLHISSIDFTSLEREDSERENPFYFSFLNSN 377

Query: 233 ITNRQ--IECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERN 289
             N+   + C  T TN  TH ++  ++     +   D    GPRYCPSI  K+ +F E+N
Sbjct: 378 KINKNKTLPCYKTYTNERTHELVRTHLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEKN 437

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG +  ++YPNG+S+A P   Q + + +I GLE   I+ P Y +EY Y+NPK
Sbjct: 438 KHVIWLEPEGFHNVLIYPNGLSSAFPINTQKEIVNSIRGLENAEIVFPAYDVEYYYVNPK 497

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC-----ICFSRT 404
            L  TLETK I GLFLAGQI GTTGYEEAA QG+VAGIN+A  S   D      +   R+
Sbjct: 498 CLNYTLETKNIKGLFLAGQICGTTGYEEAACQGIVAGINAAINSRSNDEERKEQLILKRS 557

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
           +SYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDN D RLTPI  KLG + + R    
Sbjct: 558 ESYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNCDIRLTPIAHKLGIVSDERMYIL 617

Query: 465 AKYIQEYNFLRSLLKSLVLTSK--------------------------------NLSSTS 492
            +     N L  L K L L+S                                   ++  
Sbjct: 618 RQKYASVNRLIFLFKKLQLSSSYEGEKKNSSDSCGTDAEHIFVKNSVEAFQTDAKKNAHL 677

Query: 493 ISFKQDGKTRTAYEFLS----YP-DFSIQNLFSICPDARKFSSLVIERLQI--------- 538
               + G   T Y        YP    ++ +  +       SSL+ E+  I         
Sbjct: 678 EFTSRKGNINTLYTIFRSGVEYPLHILLKKIQEVQGWNELQSSLLPEQNNIAIYMDKMKH 737

Query: 539 -----------------------ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL-- 573
                                  E  Y+ Y  +Q+ E  +I+     +IP D  Y  L  
Sbjct: 738 CGLSLDENYDLLLNCATLETACAEVKYSPYLTKQIREVDKIRDSFDLVIPPDVTYDRLNF 797

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK--KNTVKL 620
           P LSNE  EKL+  +P  L  A++IEG+T +A+  L  YIK  KN VK 
Sbjct: 798 PYLSNEEIEKLNKFRPRTLHDANRIEGVTMSAIYYLYYYIKGEKNKVKR 846



 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 10/183 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVIVIGGGH+GCEA+ ++AKL A T LIT    +IG MSCNP+IGG+GKG LV+E
Sbjct: 70  LDKKYDVIVIGGGHSGCEASHISAKLRAKTLLITQCKDSIGEMSCNPSIGGIGKGILVKE 129

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+  D +GI F++LN++KG AVRG R QADR+LY   M+  +   +NL +++
Sbjct: 130 IDALGGLMGKAIDKSGIHFKILNIRKGLAVRGHRAQADRDLYNYHMKEYMHDTKNLHILE 189

Query: 122 GEVAGFNTEKN----------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E             +  +  +       ++VVLTTGTFL GV HIGK K   
Sbjct: 190 STVQSLLIENCTSGDSPLSGRRVYGVKNKCACEFYANSVVLTTGTFLGGVCHIGKEKYHG 249

Query: 172 GRM 174
           GR+
Sbjct: 250 GRI 252


>gi|156095863|ref|XP_001613966.1| glucose inhibited division protein A homologue [Plasmodium vivax
           SaI-1]
 gi|148802840|gb|EDL44239.1| glucose inhibited division protein A homologue, putative
           [Plasmodium vivax]
          Length = 872

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/528 (35%), Positives = 268/528 (50%), Gaps = 80/528 (15%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTDK 232
           + +S + SL N   +  F+  R+KTGTP RL  ++I +   E++ ++ E    FSF+   
Sbjct: 344 LVESSTQSLSNQLRENQFEIKRMKTGTPPRLHIRSIDFTSLEREDSEAENPFYFSFLNSN 403

Query: 233 ITNRQ--IECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGERN 289
             NR   + C  T TN  TH ++  ++     +   D    GPRYCPSI  K+ +F E+N
Sbjct: 404 KVNRNKTLPCYKTYTNERTHELVRTHLNELPDFDCYDKLGNGPRYCPSIAKKVTKFAEKN 463

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            H I+LEPEG +  ++YPNG+S+A P  IQ + +R+I GLE   I+ P Y +EY Y+NPK
Sbjct: 464 KHIIWLEPEGFHDVLIYPNGLSSAFPISIQKRIVRSIRGLENAEIVFPAYDVEYYYVNPK 523

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS---ARKSNK--LDCICFSRT 404
            L  TLETK I GLFLAGQI GTTGYEEAA QG++AGIN+   AR +     +     R+
Sbjct: 524 CLNYTLETKNIGGLFLAGQICGTTGYEEAACQGIIAGINAAIGARSTPGETKEQFILKRS 583

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
           +SYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDN D RLTP+  KLG + + R    
Sbjct: 584 ESYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNCDMRLTPLASKLGIVSDERMYIL 643

Query: 465 AKYIQEYNFLRSLLKSLVLT-------------------SKNLSSTSISFKQDGKTRTAY 505
            +     N L  L K L L+                    + + ++  +FK +GK     
Sbjct: 644 RQKYSSVNRLICLFKKLQLSYPSQGENPPPSDSPGVDPEHQFVKNSVEAFKPEGKNNVHL 703

Query: 506 EFLSYP--------------DFSIQNLF--------------SICPDARKF--------- 528
           EF S                ++ +  L               S+ P+             
Sbjct: 704 EFTSRKGNINSLYTIFRSGVEYPLHTLLRKLQEVPGCTELYSSLSPEQNNIAIYTDNMQL 763

Query: 529 -------------SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL-- 573
                        +S  +E    E  Y+ Y  +Q+ E  +I+      IP D  Y  L  
Sbjct: 764 CGLPLHQCGDFLLNSATLETACAEVKYSPYLTKQIREVGKIRGSFDLPIPPDLTYDRLNF 823

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           P LSNE  EKL+  +P  L +A++IEG+T +A+  L  YIK    ++ 
Sbjct: 824 PYLSNEEIEKLNKFRPRTLHEANRIEGVTMSAIYYLYYYIKGEKKRVK 871



 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 9/182 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++++YDVIVIGGGH+GCEA+ ++AKL A T LIT    +IG MSCNP+IGG+GKG LV+E
Sbjct: 79  LDKNYDVIVIGGGHSGCEASHISAKLRAKTLLITQCRESIGEMSCNPSIGGIGKGILVKE 138

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+V D +GI F++LNV+KG AVRG R QADR+LY   M+  +   +NL +++
Sbjct: 139 IDALGGLMGKVIDKSGIHFKILNVRKGLAVRGHRAQADRDLYNYHMKEHMNGMKNLHILE 198

Query: 122 GEVAGFNTEKN---------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             V     E            +  +  +       ++VVLTTGTFL GV HIGK K   G
Sbjct: 199 STVQSLLIENCRGGSPPSGRRVYGVKNKCACEFYANSVVLTTGTFLGGVCHIGKEKYQGG 258

Query: 173 RM 174
           R+
Sbjct: 259 RI 260


>gi|157695028|gb|ABV66103.1| glucose inhibited division protein A [Rickettsiella melolonthae]
          Length = 319

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/319 (50%), Positives = 207/319 (64%), Gaps = 1/319 (0%)

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           +GK HLV+E+DAL G+M   AD AGIQ+R LN  KGPAVR  R Q DR LY+ A+++ + 
Sbjct: 1   IGKSHLVKEVDALGGIMAHAADLAGIQWRTLNASKGPAVRATRAQMDRSLYKQAIRKTLE 60

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +Q NL + Q  V     + N I  +V Q        +VVLT GTFL G IHIG  +   G
Sbjct: 61  NQANLFIFQQSVDDVILQSNRIVGVVTQMGLRFYAKSVVLTAGTFLAGKIHIGLQQAQGG 120

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
           R GD  +N L     +      RLKTGTP RLDG++I ++   +Q +D  L  FS++   
Sbjct: 121 RAGDPEANFLAEKLRQLPLRIKRLKTGTPPRLDGRSINFEVLLEQSSDNPLPVFSYLGKI 180

Query: 233 ITNR-QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
             +  QI C IT TN +TH II   +  S IYSG I   GPRYCPSIEDK+VRF ++  H
Sbjct: 181 EQHPTQISCFITYTNEKTHAIIRSGLDRSPIYSGVIDGIGPRYCPSIEDKVVRFADKLSH 240

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
           QIFLEPEGLNT  VYPNGIST+LP +IQ   I +I GLE+ +I RPGYAIEYD+ +P++L
Sbjct: 241 QIFLEPEGLNTHEVYPNGISTSLPFDIQCDLIHSIKGLEQAHITRPGYAIEYDFFDPRDL 300

Query: 352 FPTLETKKISGLFLAGQIN 370
           FP+LE++ +  LFLAGQIN
Sbjct: 301 FPSLESRLLENLFLAGQIN 319


>gi|221136608|ref|XP_002171123.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 361

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/351 (47%), Positives = 220/351 (62%), Gaps = 1/351 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIV+G GHAGCEAAA AA +G ST L+T     I  MSCNPA+GG+ KG +VR
Sbjct: 11  MFQEKYDVIVVGAGHAGCEAAAAAANMGCSTLLVTMNLQNIAQMSCNPAMGGIAKGQIVR 70

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G V+D   IQF++LN+ KGPA+  PR Q+DR  +    +  +    NLD  
Sbjct: 71  EIDALGGYSGIVSDLTAIQFKMLNLSKGPAMWSPRCQSDRMRFAEEWRMMLEGTPNLDFY 130

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V+G  +E+N I  I       I+  TVVLT GTFL G+IHIG  +   GR G+S S 
Sbjct: 131 QEMVSGILSEENEIVGIKTSLGLEIKAKTVVLTNGTFLNGLIHIGDKQFGGGRAGESASF 190

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT-DKITNRQIE 239
            +    +K  F++GR+KTGTP R+DG+++ + K  +Q  D     FS+    K    Q  
Sbjct: 191 GITEDLLKMGFESGRMKTGTPPRVDGRSLDYSKMIEQPGDVNPSKFSYSDITKPLTEQRS 250

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
           C +T T+   H ++ E    S +++G IKS GPRYCPSIEDKI RF ++  HQ+F+EPEG
Sbjct: 251 CHMTYTSETVHDLLREGFDRSPMFNGRIKSIGPRYCPSIEDKINRFADKERHQLFVEPEG 310

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKE 350
            +T  VY NG ST+LPEE+Q + +R++ G EKV   RPGYAIEYDY  P +
Sbjct: 311 WHTCEVYVNGFSTSLPEEVQFKALRSVEGFEKVKFFRPGYAIEYDYFPPTQ 361


>gi|116334904|ref|YP_802399.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Carsonella ruddii PV]
 gi|123320796|sp|Q05FY8|MNMG_CARRP RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme MnmG; AltName: Full=Glucose-inhibited division
           protein A
 gi|116235185|dbj|BAF35033.1| glucose inhibited division protein A [Candidatus Carsonella ruddii
           PV]
          Length = 500

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/460 (40%), Positives = 276/460 (60%), Gaps = 7/460 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +++I+IG GH+G EAA  A+K+     +IT     +G MSCNP+IGG+GK HLV+E++  
Sbjct: 4   FNIIIIGAGHSGIEAAISASKICNKIKIITSNLENLGIMSCNPSIGGIGKSHLVKELELF 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+M   +D + I  ++LN KKG +V   R Q DR LY+  + + +  ++N+ + Q E+ 
Sbjct: 64  GGIMPEASDYSRIHSKLLNYKKGESVHSLRYQIDRILYKNYILKILFLKKNILIEQNEIN 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                K  I  I  +         +++  GTF+   I+IGK       +  +   S+  S
Sbjct: 124 KIIRFKKKIL-IFNKLKFFNIAKIIIVCAGTFINSKIYIGKNIKA---LNKAEKKSISYS 179

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
           F K +    +LKTGTP RLD   + + K   Q++D  +   S+  +   N  ++C IT T
Sbjct: 180 FKKINLFISKLKTGTPPRLDLNYLNYKKLSVQYSDYTI---SYGKNFNFNNNVKCFITNT 236

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           + + +  I +NIK+S++++   KS GPRYCPSIEDKI +F     HQIFLEPE   +  +
Sbjct: 237 DNKINNFIKKNIKNSSLFNLKFKSIGPRYCPSIEDKIFKFPNNKNHQIFLEPESYFSKEI 296

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFL 365
           Y NG+S +L   IQ + I+ I G++K  IIR  Y I+YDY +P+ L  +L  K  + +FL
Sbjct: 297 YVNGLSNSLSYNIQKKLIKKILGIKKSYIIRYAYNIQYDYFDPRCLKISLNIKFANNIFL 356

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQINGTTGYEEA++QG VAGINSARK  KL      + +SYIGV++ DLT+ G+ EPYR
Sbjct: 357 AGQINGTTGYEEASSQGFVAGINSARKILKLPLWKPKKWNSYIGVLLYDLTNFGIQEPYR 416

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           +FTS+++ R+ LR DNA  RL  I   LGC+   + K + 
Sbjct: 417 IFTSKSDNRLFLRFDNAIFRLINISYYLGCLPIVKFKYYN 456


>gi|237751669|ref|ZP_04582149.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter bilis ATCC 43879]
 gi|229373035|gb|EEO23426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Helicobacter bilis ATCC 43879]
          Length = 767

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 162/398 (40%), Positives = 231/398 (58%), Gaps = 8/398 (2%)

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +++ C +T TN +TH+II EN   + +++G I+  GPRYCPSIEDKI RF ++  HQ
Sbjct: 368 FRPKELPCFVTYTNEKTHKIIEENFYRAPLFTGQIQGVGPRYCPSIEDKINRFRDKLRHQ 427

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +FLEP+  +    Y NG+ST+LP E+Q Q I +I GLE   I R GYAIEYDY  P  LF
Sbjct: 428 LFLEPQTYSAGEYYVNGLSTSLPYEVQEQVIHSIEGLENAIITRYGYAIEYDYSQPTNLF 487

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK------SNKLDCICFSRTDS 406
            TLE++ +  L+LAGQINGTTGYEEAAAQG++AGIN+A         +K   +  SR +S
Sbjct: 488 HTLESRIVKSLYLAGQINGTTGYEEAAAQGILAGINAALSILYTQGKSKRASLVLSREES 547

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           YIGVMIDDL +KG  EPYR+FTSRAEYR+ LR DNA  R+ P   +LG + E    +   
Sbjct: 548 YIGVMIDDLVTKGTNEPYRVFTSRAEYRLLLREDNACFRMLPYSRELGLLDEEILNQLEV 607

Query: 467 YIQEYNFLRSLL-KSLVLTSKNLSSTSISFKQDGKTRTAYEF-LSYPDFSIQNLFSICPD 524
            ++       +L +S     +NL   +   ++  + +  +   L         +  + P 
Sbjct: 608 DLENIEKHLPILSESYTPNKQNLERLTRIGEEGFQNKCHFGLILGRDSMKPTKMRKLDPR 667

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKL 584
               S+  +++LQI + Y  Y  +Q  + K  +      IP DF +  +  LS E+ EKL
Sbjct: 668 FSGLSARALKQLQIHAKYQNYIEKQSEQIKRSEKNLHIEIPLDFSFEGISGLSLEVIEKL 727

Query: 585 SILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++ KP  L +A  I G+TPA+L +L ++I     K  E
Sbjct: 728 TLAKPKTLKEAKLISGITPASLEVLELHIALYHKKQRE 765



 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/223 (44%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YD+IV+GGGHAG EA+ + AK+G  T LITH    I   SCNPA+GGLGKGHL +E
Sbjct: 1   MRNNYDIIVVGGGHAGVEASHICAKMGLQTLLITHLIDNIALASCNPAVGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D+L GLMG + D +G+Q+R+LN  KGPAVRG R Q D +LYR   +  +L+ +NL VIQ
Sbjct: 61  VDSLGGLMGAITDISGLQYRILNASKGPAVRGTRAQIDMDLYRKHARDILLNTKNLHVIQ 120

Query: 122 GEVAGFN----TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           G V         EK     + +          +++T GTFL+G+IHIG+ K   GR G+ 
Sbjct: 121 GNVIEILSQTKEEKTEAIGVKLSIQKEFFAKKIIITAGTFLKGLIHIGENKSENGRAGEI 180

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
            SN L  S  +      RLKTGT  R+ G +I     EK + D
Sbjct: 181 SSNELSESLKQLGIPLSRLKTGTCPRILGSSINHTTLEKHYGD 223


>gi|119569152|gb|EAW48767.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_h [Homo sapiens]
          Length = 384

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/360 (42%), Positives = 229/360 (63%), Gaps = 10/360 (2%)

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           RYCPSIE K++RF  R  HQ++LEPEG+++D++YP G+S  LP E+Q + I  I GLEK 
Sbjct: 5   RYCPSIESKVLRFPNR-LHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKA 63

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
            +I+PGY ++YDY++P+++ P+LET  +  LF AGQINGTTGYEEAAAQG++AGIN++ +
Sbjct: 64  KVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLR 123

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++      SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLRPDNAD+RLT  G K
Sbjct: 124 VSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYK 183

Query: 453 -LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT---AYEFL 508
             GC+ ++R +R            S+LKS+   S                     A + L
Sbjct: 184 DAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVL 243

Query: 509 SYPDFSIQNLFSICPD-ARKFS--SLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
            Y +  + +L    P+  +K++    + ERL+IE++Y +    Q+ E K ++ +E   +P
Sbjct: 244 KYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLP 303

Query: 566 KDFDYSSLP--ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
           KD DY ++   +LS+E++EKL   +P  +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 304 KDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 363


>gi|253582392|ref|ZP_04859615.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fusobacterium varium ATCC 27725]
 gi|251835931|gb|EES64469.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Fusobacterium varium ATCC 27725]
          Length = 363

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/339 (41%), Positives = 207/339 (61%), Gaps = 12/339 (3%)

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G++N H +FLE EG  T  +Y  G+S++LP ++Q   +R I GLE  +I+R  YAIEYDY
Sbjct: 23  GDKNQHHLFLEREGYETTEIYLGGLSSSLPTDVQDGMVRNISGLENAHIMRYAYAIEYDY 82

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P+E+  TLE+K I  LFLAGQINGT+GYEEA AQGL+AGIN+ RK    + I   R D
Sbjct: 83  VPPQEIKYTLESKTIENLFLAGQINGTSGYEEAGAQGLLAGINAVRKLQGKEPIILDRAD 142

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           SYIG ++DDL SKG  EPYRMFT+R+EYR++LR DNAD RL+ IG ++G + E    R  
Sbjct: 143 SYIGTLVDDLVSKGTNEPYRMFTARSEYRLALREDNADLRLSKIGYEVGLLPEEEYLRVV 202

Query: 466 KYIQEYNFLRSLLKSLVLTSKN------LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF 519
           +  ++   ++  LK   +   N      L     +  +DG T   +E L  PD    ++ 
Sbjct: 203 QKEKDVELIKEKLKENYVGPSNPRVNEVLRKCGEAELKDGTTY--FELLRRPDVKYSDIK 260

Query: 520 SICP----DARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
            I      +   +S     +++++  Y+ Y  R M   ++ K  E + +P+D DY SL  
Sbjct: 261 YIAELSDLELGDYSKDTEYQVEVQVKYSGYIERSMKMIEKHKSLENKRLPEDLDYDSLEN 320

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           +  E K+KL  ++P+N+ QAS+I G++PA + +LLIY+K
Sbjct: 321 IPKEAKDKLKAVRPYNIGQASRISGVSPADIQVLLIYLK 359


>gi|301630293|ref|XP_002944256.1| PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme mnmG-like [Xenopus (Silurana) tropicalis]
          Length = 472

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/357 (36%), Positives = 200/357 (56%), Gaps = 24/357 (6%)

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEE----------IQHQFIRTIPGLEKVNIIRP 337
            N HQ++L  + ++  V+  + ++ A+             + +  +R++ GLE  +I+RP
Sbjct: 113 ENQHQLWLFQQAVDDLVLEGDRVAGAVTXVGITFRSRTVVLTYALVRSMRGLENAHILRP 172

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GYAIEYDY +P+ L  + ET++I GLF AGQINGTTGYEEAAAQGL AG+N+A +     
Sbjct: 173 GYAIEYDYFDPRSLKSSFETRQIQGLFFAGQINGTTGYEEAAAQGLYAGLNAALQCRSEA 232

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                R  +Y+GV++DDL +KGV EPYRMFTSRAE+R+ LR DNAD RLT  G ++G + 
Sbjct: 233 PWLPGRDQAYLGVLVDDLVTKGVTEPYRMFTSRAEFRLQLREDNADMRLTEAGRRMGLVP 292

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFS 514
           + R   F +     +     LKS  +  + L++     +  K        ++ L  P   
Sbjct: 293 DARWNAFCRKRDAVSRETERLKSTWVNPRILAAQESERVLGKAIEHEYKLFDLLRRPGVG 352

Query: 515 IQNLFSICPD-----------ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRL 563
            + L ++                  S  VIE+++I + YA Y  RQ  E +     E+  
Sbjct: 353 YEALMAMAGGKYASGDVSRETLGDLSVPVIEQVEIAAKYAGYIDRQKDEVQRAAHFEQLR 412

Query: 564 IPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           +P D DY  + ALS E+++KL   +P  L QAS+I G+T AA++LLL+++KK   K+
Sbjct: 413 LPDDLDYMQVAALSIEVRQKLQKHRPETLGQASRISGVTAAAISLLLVHLKKGGFKV 469



 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/153 (50%), Positives = 100/153 (65%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + +DVIV+GGGHAG EAA  AA++G  T L+TH   T+G MSCNP+IGG+GKGHLV+
Sbjct: 2   LYPQEFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNIETLGQMSCNPSIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DAL G M    D +GIQFR+LN  KGPAVR  R QADR LY+ A++R + +Q  L + 
Sbjct: 62  EVDALGGAMALATDESGIQFRMLNSSKGPAVRATRAQADRVLYKAAIRRMLENQHQLWLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153
           Q  V     E + ++  V       R  TVVLT
Sbjct: 122 QQAVDDLVLEGDRVAGAVTXVGITFRSRTVVLT 154


>gi|260890891|ref|ZP_05902154.1| glucose-inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859444|gb|EEX73944.1| glucose-inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 377

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 19/373 (5%)

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           S I +G + + GPR+CPS++ KI+ F E+  HQIFLE E + +D +Y NG +TA+P   Q
Sbjct: 5   SPIVTGIVSTKGPRHCPSLDRKIMNFPEKTNHQIFLEQESVESDEIYINGFTTAMPPFAQ 64

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
              ++TI GLE   I+R GYA+EY+++   +L  TLETK I GL+ AG INGT+GYEEAA
Sbjct: 65  EAMLKTISGLENAKIVRYGYAVEYNFVPAHQLKLTLETKVIDGLYTAGTINGTSGYEEAA 124

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
            QG +AG+N+ARK      I   R++ YIGV+IDD+ +K   EPYR+  SRAEYR++LR 
Sbjct: 125 CQGFMAGVNAARKILGKKEIVIDRSEGYIGVLIDDIINKKTPEPYRVLPSRAEYRLTLRQ 184

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSI------ 493
           DN   RL     ++  +   +        QE       LK + +     ++  +      
Sbjct: 185 DNIFIRLLEKAKEIRLLNAEKLTELENTCQEIENEVERLKGITVYPTKENNEKLLEIVEK 244

Query: 494 -------SFKQDGKT-----RTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
                    +++ K       + +EFL+  + +  NL     +  K S L  E+++I + 
Sbjct: 245 QNKSESSEIEKNSKNSMNSPVSGFEFLARKEINYNNLSEFV-ETVKLSDLAKEQVEINAK 303

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  +  R+  + ++ K  EK +IPKDFDY S+  LSN     L   +P  + QAS+I G+
Sbjct: 304 YNVFIEREKAQIEKFKKLEKMIIPKDFDYESVKGLSNIAISGLMYGQPETIGQASRISGV 363

Query: 602 TPAALNLLLIYIK 614
           T   ++LL+  +K
Sbjct: 364 TYNDISLLIAILK 376


>gi|164663473|ref|XP_001732858.1| hypothetical protein MGL_0633 [Malassezia globosa CBS 7966]
 gi|159106761|gb|EDP45644.1| hypothetical protein MGL_0633 [Malassezia globosa CBS 7966]
          Length = 411

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/401 (39%), Positives = 238/401 (59%), Gaps = 14/401 (3%)

Query: 224 IPFSFMTDKITN----RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           + FSF+           Q+ C  TRT   TH I+ + ++         K  GPRYCPS+E
Sbjct: 1   MAFSFLHPHGPPIDAQTQLYCFGTRTTPATHVIVHQEVQGDDY--EMTKYTGPRYCPSLE 58

Query: 280 DKIVRFGERNGHQIFLEPEG------LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
            K++RF  +  H ++LEPEG       +  V+YPNG+S +L  + Q + +RTIPGLE   
Sbjct: 59  VKVLRFAHKESHPVWLEPEGLTTTPQRDGHVLYPNGLSCSLSPDAQTRMVRTIPGLEHAV 118

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           ++RPGYA+EYD+++P+EL PTLET++I GL +AGQINGTTGYEEA  QG++AG+N+  ++
Sbjct: 119 LLRPGYAVEYDHVDPRELLPTLETRRIRGLAMAGQINGTTGYEEAGVQGVLAGLNAGLRA 178

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            K   +  SR+D ++GVM+DDL  +GV+EPYRMFTSR+EYR+SLR DNAD RLTP+   +
Sbjct: 179 QKRRELTVSRSDGFVGVMLDDLRLQGVMEPYRMFTSRSEYRLSLRADNADLRLTPLVHAV 238

Query: 454 G--CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
               I + R     +   + +F    L    +TS+  +S       D +T +A + +  P
Sbjct: 239 SPESITDTRLAALERVRADLDFGMQCLARTKMTSRAWASHGFQAADDVRTLSALDMMHRP 298

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
              IQ+L    P+ R      +ERL  ++SY     RQ  + +  + +E   +P D  ++
Sbjct: 299 HARIQDLIPFVPELRGLHPHTLERLATQASYMPLLERQASDIEAFQRDEALALPVDMAFA 358

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            L  +S+E+KE+ S +KP  L +A +I G TPAA  +L  +
Sbjct: 359 ELQGVSDEMKERFSCVKPRTLGEAKRIAGCTPAAYAVLWRH 399


>gi|255017479|ref|ZP_05289605.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL F2-515]
          Length = 311

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 189/308 (61%), Gaps = 7/308 (2%)

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           EE+Q + +RTIPGLE V ++R GYAIEYD + P +L+P+LETK + GLF AGQINGT+GY
Sbjct: 1   EEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGY 60

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           EEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPYR+ TSRAEYR+
Sbjct: 61  EEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRL 120

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LSS 490
            LR DNAD RLT IG ++G I + R +RF          +  L+   +         L  
Sbjct: 121 LLRHDNADLRLTEIGHEIGLISDERYERFLAKQSALEAEKERLEKTRIKPTAEVQAMLKE 180

Query: 491 TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQM 550
                 +DG    A + L  P+ +   +  I       +  + E+++I+  Y  Y  +  
Sbjct: 181 IGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSN 238

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G+ PA +++LL
Sbjct: 239 LQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILL 298

Query: 611 IYIKKNTV 618
           +YI++  +
Sbjct: 299 VYIEQGKI 306


>gi|254496641|ref|ZP_05109504.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella drancourtii LLAP12]
 gi|254354069|gb|EET12741.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Legionella drancourtii LLAP12]
          Length = 300

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +RT+ G E  +I RPGYAIEYDY +P+ L   L+TK I  LF AGQINGTTGYEEAAAQG
Sbjct: 1   MRTLKGFENAHITRPGYAIEYDYFDPRGLTSFLQTKPIPNLFFAGQINGTTGYEEAAAQG 60

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
           ++AG+N+A +  + +  C  R ++YIGV+IDDL + G  EPYRMFTSRAEYR+ LR DNA
Sbjct: 61  IIAGMNAALQVQEKELWCPRRDEAYIGVLIDDLITCGTQEPYRMFTSRAEYRLLLREDNA 120

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL-TSKNLSSTSISFKQDGKT 501
           D RLT  G +LG +G+ R  +F+   +     ++LL +  +    N +   I        
Sbjct: 121 DLRLTAKGRELGLVGDERWYQFSAKREAIEATQALLHNTWVRVGHNDALKEILLNPMQHD 180

Query: 502 RTAYEFLSYPDFSIQNLFSI-CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
             A EF+  P+ + Q+L  +      +    V E+++I++ YA Y  RQ  + ++++ +E
Sbjct: 181 NRASEFIKRPEINYQHLLMLTDLGLPELPPAVSEQIEIQNKYAGYIDRQQQDIEKMRKQE 240

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
              +P+  DY+ +  LSNE+ +KL+ +KP +L QA +I G+TPAAL+LLL+++KK  +
Sbjct: 241 HTALPESLDYNEVTGLSNEVIQKLTKIKPTSLAQAGRISGVTPAALSLLLVHLKKQRL 298


>gi|34763617|ref|ZP_00144548.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886715|gb|EAA23857.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 333

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/329 (39%), Positives = 191/329 (58%), Gaps = 9/329 (2%)

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPT 354
           +E EG  T+ +Y  G+S++LP ++Q + ++ I G E   I+R  YAIEYDY+ P+E+  T
Sbjct: 1   MEREGYETNEIYLGGLSSSLPVDVQEEMLKNIKGFENAKIMRYAYAIEYDYVPPEEIKYT 60

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           LE++ +  LFLAGQINGT+GYEEA AQGL+AGIN+ +K    + +   R DSYIG +IDD
Sbjct: 61  LESRTVENLFLAGQINGTSGYEEAGAQGLMAGINAVKKLRNEEPVILDRADSYIGTLIDD 120

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           L SKG  EPYRMFT+R+EYR+ LR DNAD RLT +G +LG + E   +R  K  ++   +
Sbjct: 121 LVSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKII 180

Query: 475 RSLLKSLVLTSKNLSSTSISFK----QDGKTRTAYEFLSYPDFSIQNLFSICP-----DA 525
             +L    +   N     I  K          T  E L  P+ + +++  I       D 
Sbjct: 181 TEILVKTNVGPSNPRVNEILLKRGENPIKDGSTLLELLRRPEVTFEDIKYISEEIKGLDL 240

Query: 526 RKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           + +      +++I   Y  Y  R +   ++ K  E + IP D DY  L  +  E K+KL 
Sbjct: 241 QDYDHDTTYQVEITVKYEGYINRALKMIEKHKSMENKKIPVDIDYDDLKTIPKEAKDKLK 300

Query: 586 ILKPFNLLQASKIEGMTPAALNLLLIYIK 614
            +KP N+ QAS+I G++PA +  +LIY+K
Sbjct: 301 RIKPINIGQASRISGVSPADIQAILIYLK 329


>gi|13272341|gb|AAK17104.1|AF291051_1 cell division protein [Candidatus Carsonella ruddii]
          Length = 485

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/448 (40%), Positives = 265/448 (59%), Gaps = 7/448 (1%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
            EAA  A+K+     +IT     +G MSCNP+IGG+GK HLV+E++   G+M   +D + 
Sbjct: 1   IEAAISASKICNKIKIITSNLENLGIMSCNPSIGGIGKSHLVKELELFGGIMPEASDYSR 60

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           I  ++LN KKG +V   R Q DR LY+  + + +  ++N+ + Q E+      K  I  I
Sbjct: 61  IHSKLLNYKKGESVHSLRYQIDRILYKNYILKILFLKKNILIEQNEINKIIRFKKKIL-I 119

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
             +         +++  GTF+   I+IGK       +  +   S+  SF K +    +LK
Sbjct: 120 FNKLKFFNIAKIIIVCAGTFINSKIYIGKNIKA---LNKAEKKSISYSFKKINLFISKLK 176

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENI 257
           TGTP RLD   + + K   Q++D  +   S+  +   N  ++C IT T+ + +  I +NI
Sbjct: 177 TGTPPRLDLNYLNYKKLSVQYSDYTI---SYGKNFNFNNNVKCFITNTDNKINNFIKKNI 233

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
           K+S++++   KS GPRYCPSIEDKI +F     HQIFLEPE   +  +Y NG+S +L   
Sbjct: 234 KNSSLFNLKFKSIGPRYCPSIEDKIFKFPNNKNHQIFLEPESYFSKEIYVNGLSNSLSYN 293

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
           IQ + I+ I G++K  IIR  Y I+YDY +P+ L  +L  K  + +FLAGQINGTTGYEE
Sbjct: 294 IQKKLIKKILGIKKSYIIRYAYNIQYDYFDPRCLKISLNIKFANNIFLAGQINGTTGYEE 353

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           A++QG VAGINSARK  KL      + +SYIGV++ DLT+ G+ EPYR+FTS+++ R+ L
Sbjct: 354 ASSQGFVAGINSARKILKLPLWKPKKWNSYIGVLLYDLTNFGIQEPYRIFTSKSDNRLFL 413

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFA 465
           R DNA  RL  I   LGC+   + K + 
Sbjct: 414 RFDNAIFRLINISYYLGCLPIVKFKYYN 441


>gi|225431681|ref|XP_002264011.1| PREDICTED: similar to glucose-inhibited division A family protein
           [Vitis vinifera]
          Length = 490

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/317 (40%), Positives = 197/317 (62%), Gaps = 2/317 (0%)

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           NG ST LPE +Q   +RT+PGLE  +++RP YA+EYD++   +   +L TK+I GLF +G
Sbjct: 142 NGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAYQCSRSLMTKQIEGLFFSG 201

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QINGTTGYEEAAAQGL++GIN+AR S+    I   R  SYIG +IDDL +K + EPYRM 
Sbjct: 202 QINGTTGYEEAAAQGLISGINAARYSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRML 261

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSR+E+R+ LR DNAD+RLTP+G ++G I +RR K +     + +  +  L+++ ++  +
Sbjct: 262 TSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKIYQDKQAQISQEKKRLRTVRISGGD 321

Query: 488 LSS--TSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
           L+S  T +S +    + T    L  P    + L          S +  E ++I+  Y  +
Sbjct: 322 LASDVTHLSGQPVKDSSTLESILKKPHVQYKVLDKHGFGNELLSKIEKECVEIDIKYEGF 381

Query: 546 TGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAA 605
             RQ  + +++  ++ R +P+D DY ++  LS E +EKLS ++P  + QAS++ G++PA 
Sbjct: 382 IMRQQSQLQQMARQQHRPLPEDLDYYAMTTLSLEAREKLSKIRPQTIGQASRVGGVSPAD 441

Query: 606 LNLLLIYIKKNTVKLNE 622
           +  LLI ++ N  K  E
Sbjct: 442 ITALLIILETNRRKAQE 458


>gi|41058571|gb|AAR99269.1| glucose-inhibited division protein A [Candidatus Blochmannia
           ulcerosus]
          Length = 311

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 150/311 (48%), Positives = 198/311 (63%), Gaps = 3/311 (0%)

Query: 41  IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           IG MSCNP+IGG+GKGHLV+EIDA+ G+M    D +GIQFR+LN  KG AV+  R QAD+
Sbjct: 1   IGQMSCNPSIGGIGKGHLVKEIDAMGGVMASAIDQSGIQFRILNSGKGAAVKSTRAQADK 60

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLR 159
            LYR  ++R +  Q+ L ++QG V     + N I  +V+ Q    I   +V+LT GTFL 
Sbjct: 61  SLYRQFIRRTLEMQDFLSILQGSVEDLIIKNNKIIGVVIPQIGIKIYSKSVILTAGTFLN 120

Query: 160 GVIHIGKLKIPAGRMGDSPS-NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           G I+IG      GR GD  S   L N          RLKTGT  R+  ++I +     Q+
Sbjct: 121 GRIYIGMNNFTGGRAGDLESSVLLSNKLCTLSLHMSRLKTGTSPRIHSRSINFSDMSIQY 180

Query: 219 ADERLIPFSFMTD-KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           +D+ +  FSF+   K   +QI C IT TN +TH II  N+  S +YSG I    PRYCPS
Sbjct: 181 SDDPIPIFSFIGSAKQHPKQIPCYITHTNSKTHDIIRSNLHKSPMYSGLIAGVAPRYCPS 240

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           IEDK+ RF +R+ HQIFLEPEGL+T  +Y NGIST+LP ++Q + +++I GLE   I+RP
Sbjct: 241 IEDKVTRFSDRSAHQIFLEPEGLHTSEIYLNGISTSLPFDVQLEIVQSIRGLEHAQILRP 300

Query: 338 GYAIEYDYINP 348
           GYAIEYD+ NP
Sbjct: 301 GYAIEYDFFNP 311


>gi|218662616|ref|ZP_03518546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli IE4771]
          Length = 299

 Score =  366 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 193/295 (65%), Positives = 228/295 (77%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIVIGGGHAG EAA+ AA+LGA TAL+TH+  TIG MSCNPAIGGLGKGHLVR
Sbjct: 5   MTGNVYDVIVIGGGHAGTEAASAAARLGAKTALVTHRRDTIGVMSCNPAIGGLGKGHLVR 64

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR LYRLAM   I +   LD++
Sbjct: 65  EIDAMDGLMGRVADLAGIQFRMLNRKKGAAVRGPRTQADRMLYRLAMLAAIEATPGLDIV 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +G+    +   N ++ ++M+D   ++   VVLTTGTFLRG+IHIG  K PAGR+G+ PS 
Sbjct: 125 EGDAFDLDVVDNRVAGVIMKDGRRLKAPAVVLTTGTFLRGLIHIGSDKTPAGRVGEPPSL 184

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
            L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L+PFSFMTD IT RQIEC
Sbjct: 185 GLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEDLVPFSFMTDSITTRQIEC 244

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           G+TRT   THRII++NIK SA+YSG I+  GPRYCPSIEDK+V+FGER+GHQ+FL
Sbjct: 245 GVTRTTEATHRIIVDNIKRSAMYSGQIEGVGPRYCPSIEDKLVKFGERDGHQVFL 299


>gi|302845030|ref|XP_002954054.1| hypothetical protein VOLCADRAFT_121255 [Volvox carteri f.
           nagariensis]
 gi|300260553|gb|EFJ44771.1| hypothetical protein VOLCADRAFT_121255 [Volvox carteri f.
           nagariensis]
          Length = 686

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 189/311 (60%), Gaps = 4/311 (1%)

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G ST LPE +Q   ++T+PGLE+V ++RP YA+EYDY+   +  PTLETKK+ GLF +G
Sbjct: 337 EGFSTGLPERLQLALLQTLPGLERVKMLRPAYAVEYDYLPAHQCHPTLETKKVQGLFFSG 396

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+NGTTGYEEAA+QGLVAG+N+A ++     +   R  SY+G +IDDL +K + EPYRM 
Sbjct: 397 QLNGTTGYEEAASQGLVAGVNAAMRALGRPPVTLPRDSSYLGTLIDDLVTKDLREPYRML 456

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN 487
           TSR+EYR+ LR DNAD RLT +G ++G I +RR + F          ++ L +  + + +
Sbjct: 457 TSRSEYRLLLRSDNADRRLTQLGREIGLIDDRRWRLFRDKQARIEAEKARLAACRIRADS 516

Query: 488 L---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQIESSYA 543
               ++ ++S      + T  E L  P      L     D   + S    E ++I+  YA
Sbjct: 517 EAALAAAALSGHAVPSSLTLEELLRRPHVHYSILERHGLDGGSELSFAEREAVEIDIKYA 576

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            +  RQ  +      +  + +P D DYS++  LS E +EKL+ ++P ++ QAS+I G++P
Sbjct: 577 GFIARQEKQLAAFSSKSSKPLPPDLDYSAISTLSLEAREKLNKIRPRDIGQASRIGGVSP 636

Query: 604 AALNLLLIYIK 614
           A ++ LL++++
Sbjct: 637 ADVSALLVHLE 647



 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDVIV+G GHAGCEAA  AA+LG  T L+T     +G   CNPA+GG  K  LV E+
Sbjct: 117 EEDYDVIVVGAGHAGCEAALAAARLGCRTLLLTLNLDRVGWQPCNPAVGGPAKSQLVHEV 176

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL G +GR+AD   +Q RVLN  KGPAV   R Q D+  Y   M+R +  Q+ L++ + 
Sbjct: 177 DALGGEIGRMADRCYLQRRVLNRSKGPAVWALRAQTDKHEYSRTMRRVLEEQQGLEIREA 236

Query: 123 EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            V G +    + +  +        R   VVLTTGTF+ G I +G+  + AGR G++ S  
Sbjct: 237 MVVGLDVGPNDEVRGVKTYFGITFRSRAVVLTTGTFMNGTIWVGRQSMSAGRAGEAASVG 296

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
           L  +     F+T RLKTGTPAR+D +T+ +   E Q  +E 
Sbjct: 297 LTEALQSLGFETDRLKTGTPARIDARTVNFSVLEPQPGEEE 337


>gi|47219743|emb|CAG12665.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 438

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 160/388 (41%), Positives = 228/388 (58%), Gaps = 40/388 (10%)

Query: 31  TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           T L++ K  TIG++SCNP++GG+GKG LV+EIDALDGL GR  D AGI F +LN +KGPA
Sbjct: 46  TLLVSQKIQTIGALSCNPSLGGVGKGQLVKEIDALDGLCGRAGDWAGIHFSILNRRKGPA 105

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSIVMQDN 142
           V GPR Q DR+ YR  +Q E+LS   L +++G V              ++ ++ I + + 
Sbjct: 106 VWGPRAQLDRQHYREFIQSELLSTPRLTLLEGSVEELLVTEAKPDEPGQHRVTGIRLANG 165

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS-LFNSFMK-FDFDTGRLKTGT 200
           S +  S+VVLTTGTFL G + +G+  +P GR+GD+PS++ L ++  +     TGRL+TGT
Sbjct: 166 SQVSASSVVLTTGTFLSGSLFVGQNTMPGGRIGDAPSSAGLSHTLRERLGLRTGRLRTGT 225

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDK---ITNRQIECGITRTNLETHRIIMENI 257
           P R+  +++          D    PFSF+          Q+ C +T T     +++ E++
Sbjct: 226 PPRIVKESVDLSLAVLHPPDGTPTPFSFLNKHTRCKPEEQLPCHLTYTTPGVEKVVKESL 285

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
             +     D K  GPRYCPSIE +++RF  R  HQ++LEPEGL ++++YP G+S  +P E
Sbjct: 286 HLNCHIQQDTK--GPRYCPSIESRVLRFPGR-QHQVWLEPEGLTSELLYPQGLSMTMPPE 342

Query: 318 IQHQFIRTIPGLEKVNIIRP------------------------GYAIEYDYINPKELFP 353
           +Q   IR IP L +  I  P                        GY ++YD++ P +L P
Sbjct: 343 MQLSLIREIPALHRAEIHTPVRCGHSDLMHQSYLNLEVSRSALSGYGVQYDFVCPTQLSP 402

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQ 381
            L+ K   GLFLAGQINGTTGYEEAAAQ
Sbjct: 403 ALQVKSTQGLFLAGQINGTTGYEEAAAQ 430


>gi|119569146|gb|EAW48761.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_b [Homo sapiens]
          Length = 354

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 135/333 (40%), Positives = 207/333 (62%), Gaps = 9/333 (2%)

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
           +++D++YP G+S  LP E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  
Sbjct: 1   MDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHL 60

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           +  LF AGQINGTTGYEEAAAQG++AGIN++ + ++      SRT+ YIGV+IDDLT+ G
Sbjct: 61  VQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLG 120

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLL 478
             EPYRMFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+L
Sbjct: 121 TSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVL 180

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLV 532
           KS+   S                     A + L Y +  + +L    P+  +K++    +
Sbjct: 181 KSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCREL 240

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPF 590
            ERL+IE++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P 
Sbjct: 241 AERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQ 300

Query: 591 NLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623
            +  AS+I G+TPAA+  LL ++K    + + +
Sbjct: 301 TIGAASRIPGVTPAAIINLLRFVKTTQRRQSAM 333


>gi|207092762|ref|ZP_03240549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 304

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 137/304 (45%), Positives = 189/304 (62%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRDLGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           IT TNL TH+II +N   + ++SG I+  GPRYCPSIEDKI RF E+  HQ+FLEP+ ++
Sbjct: 241 ITYTNLITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH 300

Query: 302 TDVV 305
               
Sbjct: 301 KSEY 304


>gi|46205292|ref|ZP_00048731.2| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell
           division [Magnetospirillum magnetotacticum MS-1]
          Length = 281

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 161/281 (57%), Positives = 204/281 (72%)

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           +REIDALDGLMGRV D AGIQFR+LN  KGPAV+GPR QADR+LYRLAM+  +   E L 
Sbjct: 1   MREIDALDGLMGRVIDRAGIQFRILNRSKGPAVQGPRAQADRKLYRLAMRAALDETETLT 60

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +++G       E   ++ +V+ D S + C  VV+TTGTFLRG+IH+G+   PAGR+GD+P
Sbjct: 61  LLEGSAEDLVIEDGRVAGVVLADGSTLTCGAVVITTGTFLRGLIHLGEKTWPAGRVGDAP 120

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           S  L  +  +     GRLKTGTPARLDG+TI W+  ++Q  D+  +PFS++T  IT  Q+
Sbjct: 121 SLGLSLALERAGLPLGRLKTGTPARLDGRTIDWESLDRQDGDDPPVPFSYLTHSITTPQV 180

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
            CGIT T  ETH II  N++ + +YSG I+S GPRYCPSIEDK+VRF +R  HQIFLEPE
Sbjct: 181 ACGITATTPETHAIIRANLERAPMYSGQIQSTGPRYCPSIEDKVVRFADRERHQIFLEPE 240

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           GL+ D VYPNGIST+LPE++Q   I TIPGLE   +IRPGY
Sbjct: 241 GLDDDTVYPNGISTSLPEDVQRAMIATIPGLEHCRVIRPGY 281


>gi|291333885|gb|ADD93566.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 319

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 2/310 (0%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373
           +P++ Q +F+R+I G E   I + GYA+EYD+ +P+EL  TLET+KI  L+ AGQINGTT
Sbjct: 1   MPKDCQEKFVRSIEGFESAKITQYGYAVEYDFFDPRELHETLETRKIKNLYFAGQINGTT 60

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GYEEAAAQGLVAG N+A      D     R +SY+GV+IDDL + G  EPYRMFTSR+E+
Sbjct: 61  GYEEAAAQGLVAGANAALSFLGKDPWTPGREESYLGVLIDDLVTLGTKEPYRMFTSRSEH 120

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS-TS 492
           R+ LR DNAD R+T    K+G + E R K F++   +    +  L  L L  ++    +S
Sbjct: 121 RLILREDNADQRITEKAYKVGLVSESRYKIFSEKKNKIIKEKDKLAKLFLRPEDEKIYSS 180

Query: 493 ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIE 552
           +  K+     +  + L  PD   Q+L           + ++  ++    Y+ Y  RQM E
Sbjct: 181 LKIKEPKSATSFLDLLKRPDLDFQDLAKAF-SIETPDNDIVFDIETNQRYSGYIKRQMDE 239

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            +++K      IP +FDYS++  LS E+ +KLS ++P  L QA +I G+TPAA++ L++Y
Sbjct: 240 IEKMKKNRNAHIPSNFDYSNVKGLSAEITQKLSKVEPRTLAQAWRIPGITPAAISALMVY 299

Query: 613 IKKNTVKLNE 622
           +K+N  +  +
Sbjct: 300 LKRNETETAD 309


>gi|196018455|ref|XP_002118809.1| hypothetical protein TRIADDRAFT_62815 [Trichoplax adhaerens]
 gi|190578148|gb|EDV18704.1| hypothetical protein TRIADDRAFT_62815 [Trichoplax adhaerens]
          Length = 324

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 157/342 (45%), Positives = 215/342 (62%), Gaps = 22/342 (6%)

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           YCPSIEDKIVRF ++  HQIFLEPEG  +D+VYPNGIST+LP+ +Q +F+R+I GLE   
Sbjct: 1   YCPSIEDKIVRFKDKERHQIFLEPEGHESDLVYPNGISTSLPKNVQEKFVRSIYGLENAE 60

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           I+R GYAIEYD+I+P+EL  TLE+KKI+ LF AGQINGTTGYEEAA QG++AG N+A K 
Sbjct: 61  IVRWGYAIEYDFIDPRELKETLESKKINNLFFAGQINGTTGYEEAAGQGVIAGANAALKL 120

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
                +  SR+DSYIGVMI+DLT+ G  EPYRM TSRAEYRI LR DNA  RLT IG K 
Sbjct: 121 -NSKQLILSRSDSYIGVMINDLTNFGTEEPYRMMTSRAEYRIKLRNDNAAERLTEIGKKY 179

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
           G I  ++ K +     E      L+KS                     +  Y F +  D+
Sbjct: 180 GLINAQKLKNYEDICTERTKTEDLIKS--------------------KQLVYNFKNTDDY 219

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
            I  + S   +  K    ++ ++  E+ Y  Y  R + + + +K +++ +IP+  ++  +
Sbjct: 220 -IHQIKSCFSEIAKTDDRILIKIYAENLYRNYEKRLLKDIEILKKDKELIIPRTLNFGEI 278

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
             LSNE++ KL    P  +    +I+GMTP+AL  ++IY+KK
Sbjct: 279 KGLSNEIRTKLKNTSPQTIADIKRIQGMTPSALIAIIIYLKK 320


>gi|322380477|ref|ZP_08054675.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS5]
 gi|321147096|gb|EFX41798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter suis HS5]
          Length = 290

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 177/288 (61%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGGHAG EA+ VAAK+GA   L+T     IG  SCNPAIGGLGKGHLV+EIDAL 
Sbjct: 3   DIVVVGGGHAGIEASIVAAKMGAKVHLLTLLIENIGLASCNPAIGGLGKGHLVKEIDALG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G+MG ++D +G+QFR+LN  KGPAVRG R Q D +LYR   +  +L+  NL V Q  V G
Sbjct: 63  GVMGILSDLSGLQFRILNASKGPAVRGTRAQIDMDLYRQNARNLVLNTSNLSVSQEMVEG 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +        + S V+LTTGTFL+G++HIG      GR G+S S  L    
Sbjct: 123 LLIENGAVVGVKSTLGKEYKASKVILTTGTFLQGLVHIGTHTSQNGRFGESASIELAKHL 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                + GRLKTGT  RL G +I + + E  F D     FS  T      Q+ C IT TN
Sbjct: 183 KTLGLEIGRLKTGTCPRLAGNSIDFTELEAHFGDFPPPKFSHKTKDFNPIQLPCFITYTN 242

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +TH +I +N   + ++SG I+  GPRYCPSIEDKI RF ++  HQ+F
Sbjct: 243 SKTHALIEQNFHLAPMFSGQIEGVGPRYCPSIEDKIYRFKDKERHQLF 290


>gi|255550542|ref|XP_002516321.1| glucose inhibited division protein A, putative [Ricinus communis]
 gi|223544551|gb|EEF46068.1| glucose inhibited division protein A, putative [Ricinus communis]
          Length = 375

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 125/282 (44%), Positives = 171/282 (60%), Gaps = 2/282 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 79  IEERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHE 138

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+ AD   +Q RVLN+ +GPAVR  R Q D+  Y + +++ + S  NL + +
Sbjct: 139 VDALGGEIGKAADRCYLQKRVLNISRGPAVRALRAQTDKREYAMLLKKIVESTPNLFIRE 198

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V      KN  +  +          S+V+LTTGTF+ G I +G+  +PAGR G+S S 
Sbjct: 199 AMVTDILLGKNDNVEGVRTFFGMNFYASSVILTTGTFMSGKIWVGRTSMPAGRAGESSSE 258

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-KITNRQIE 239
            L  +  +  F+T RLKTGTPAR+D +T+ + + E Q  DE +  FSF  D  I   Q+ 
Sbjct: 259 GLTENLQRLGFETDRLKTGTPARVDIRTVDFSRLEPQHGDEEVSWFSFDPDVHIERAQMC 318

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
           C +TRT   TH++I EN+  +  Y G +++ GPRYCPSIEDK
Sbjct: 319 CYLTRTTKITHQLIKENLHETPTYGGWVEAKGPRYCPSIEDK 360


>gi|124806770|ref|XP_001350827.1| glucose inhibited division protein A homologue, putative
           [Plasmodium falciparum 3D7]
 gi|23496956|gb|AAN36507.1|AE014851_26 glucose inhibited division protein A homologue, putative
           [Plasmodium falciparum 3D7]
          Length = 972

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 247/514 (48%), Gaps = 64/514 (12%)

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVL---------------TTGTFLRGVIHIGKLKIP 170
               +K  I SI   D  +I+   +                       + + +   L IP
Sbjct: 285 DLKMKKGNIESIKTNDEPIIKQDKLKKINQNGESTINNMHNNYNEDNKKYINYEENLNIP 344

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSF- 228
             ++ +S + ++     + +F+  R+KTGTP RLD  +I +   E++  + +    FSF 
Sbjct: 345 FEKLIESSTKNIAQQLRENNFEIKRMKTGTPPRLDINSINFHVLEREDTEKDYPFYFSFL 404

Query: 229 -MTDKITNRQIECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVRFG 286
            M     N+ + C  T TNL+TH ++  N+     Y S D    GPRYCPSI  K+++F 
Sbjct: 405 NMNKINNNKTLPCYKTYTNLKTHELVRNNLAQLPDYDSFDKFGNGPRYCPSIAKKVMKFS 464

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E+  H I++EPEG N  ++YPNG+S+A P  IQ   I +I GLE   I+ P Y +EY Y+
Sbjct: 465 EKKKHIIWIEPEGFNNKLIYPNGLSSAYPIHIQKDIINSIKGLENAQIVFPAYDVEYYYV 524

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN------------ 394
           NPK L  TLETK + GLFLAGQI GTTGYEEAA QG+VAGIN+A  S             
Sbjct: 525 NPKCLNYTLETKNVKGLFLAGQICGTTGYEEAACQGIVAGINAALNSKKDNNKYNNNNNN 584

Query: 395 -----------KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
                      +++     R +SYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDN D
Sbjct: 585 ENNNNHNINNDEVNKFILKRNESYIGVLIHDLINKGITEPYRMFTSRAEYRLFLRPDNCD 644

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RLTP   +LG + + R     +     N    + K +++   N +ST  +  +      
Sbjct: 645 IRLTPKANQLGIVSKERIYMLRQKYSSVNKFIYVFKKILINEDNPNSTYENMNKSNTYIN 704

Query: 504 AYEFLSYP-----DFSIQNLFSICPDARKF---SSLVIERLQIESSYAAYTGRQMIEAKE 555
             + +        +  +Q++  + P+   +    +  I  ++          +Q   +  
Sbjct: 705 ETKEIKKNIKHNVNQELQHIDKLNPNNLIYSKNDNNHINTIETNIR-----EKQFEASNN 759

Query: 556 IKFEEKRLIPKDFDYSSLPA----LSNELKEKLS 585
              +   L+     Y+ +      L  E   KLS
Sbjct: 760 YNKQNDELLQT---YNHIDNEKNILKKE--NKLS 788



 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 157/332 (47%), Gaps = 42/332 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIVIGGGH+GCEA+ ++AK  A T L+T    TIG MSCNP+IGG+GKG LV+E
Sbjct: 85  VKKNYDVIVIGGGHSGCEASYISAKSNAMTLLVTQNKETIGEMSCNPSIGGIGKGILVKE 144

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           IDAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NLD+++
Sbjct: 145 IDALGGLMGKVIDKSGIHFKILNMKKGLAVRGHRAQADRDLYNYYMKEYLYNTPNLDILE 204

Query: 122 GEVAGFN--------------------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
             V                         +K  I  I  + +  I    V+LTTGTFL G+
Sbjct: 205 NSVQSLLIDTYEDKNNNNDNINDYNNNVKKKKIYGIKNKCSCEIYSHNVILTTGTFLGGI 264

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
            HIGK K   GR+    +N           +   +KT     +    +   K   Q  + 
Sbjct: 265 CHIGKDKYIGGRIKRLINNF---DLKMKKGNIESIKTNDEPIIKQDKL---KKINQNGES 318

Query: 222 RLIPFSFMTDKITNRQIECGITRT---NLETHRIIMENIK----HSAIYSGDIKSYGPRY 274
            +       ++   +     I      N+   ++I  + K         + +IK      
Sbjct: 319 TINNMHNNYNEDNKK----YINYEENLNIPFEKLIESSTKNIAQQLRENNFEIKRMKTGT 374

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            P ++   + F     H +  E    +    +
Sbjct: 375 PPRLDINSINF-----HVLEREDTEKDYPFYF 401



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 11/214 (5%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K   E  + +      +  L+ +N    L                           L +
Sbjct: 761 NKQNDELLQTYNHIDNEKNILKKENK-LSLNTKLFNSKNNSNINYTHHDNK--NIKSLYN 817

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS-IQNLFSICPDARKFSSLVI-- 533
           +LKS V    N     I    + +    Y           +++++  P       ++I  
Sbjct: 818 ILKSGVEYPLNDLLHGIKNLHNQEQFKNYLSKHIYSLDIYKDIYTRDPSFFNSDDVLINI 877

Query: 534 ---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS--LPALSNELKEKLSILK 588
              E    E  Y++Y  +Q  E ++I      +IP+D  Y     P LSNE  EKL+  K
Sbjct: 878 ATLETACAEIKYSSYLKKQFQEIRKINDNFDLVIPRDLKYDRNNFPYLSNEEIEKLNKFK 937

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           P  L +A+KIEG+T +A+N L  +IK    K N+
Sbjct: 938 PQTLFEANKIEGVTMSAVNYLYYHIKYERRKENK 971


>gi|70946378|ref|XP_742910.1| glucose inhibited division protein A [Plasmodium chabaudi chabaudi]
 gi|56522147|emb|CAH76906.1| glucose inhibited division protein A homologue, putative
           [Plasmodium chabaudi chabaudi]
          Length = 862

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 147/341 (43%), Positives = 196/341 (57%), Gaps = 15/341 (4%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---- 229
           + +  + +L     + +F+  R+KTGTP RL   +I +D  EK    E+  PF F     
Sbjct: 308 LIEESTKNLATQLKENNFEIKRMKTGTPPRLCKDSINFDILEK-EGTEKKHPFYFSFLNS 366

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGER 288
                N+ + C  T TN+ TH ++++ +     +   D    GPRYCPSI  K+ +F E+
Sbjct: 367 NKINNNKTLPCYKTYTNMNTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEK 426

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H I+LEPEG +  ++YPNG+S+A P   Q + I +I GLE   I+ P Y +EY Y+NP
Sbjct: 427 KKHIIWLEPEGFDNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDVEYFYVNP 486

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA---RKSNKLDCI---CFS 402
           K L  TLETK I+GLFL+GQI GTTGYEEAA QG+VAGIN+A    K   +  I     +
Sbjct: 487 KCLNYTLETKIINGLFLSGQICGTTGYEEAACQGIVAGINAALNSLKKKNMSPISNFVLT 546

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R DSYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDNAD RLTP   +LG   + R  
Sbjct: 547 RNDSYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNADIRLTPKAEQLGIASKERLY 606

Query: 463 RFAKYIQEYNFLRSLLKSLVLTSKN---LSSTSISFKQDGK 500
                    N + S+ K L L +     L    I  K   K
Sbjct: 607 ILNHKYYSVNKIISVFKKLTLNNSENQKLIEEGIKKKDQTK 647



 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 120/204 (58%), Gaps = 20/204 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIVIGGGH+GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EI
Sbjct: 56  EKKYDVIVIGGGHSGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEI 115

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++ 
Sbjct: 116 DALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNHYMKEYMFNMPNLYILEN 175

Query: 123 EVAGFNTEKNI--------------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            V     E +I                    +  I  + +       V+LTTGTFL G+ 
Sbjct: 176 TVHSLLIENSITQNDSTNMDENMEEKKKYKYVYGIKNKCSCEFYADNVILTTGTFLGGIC 235

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSF 186
           HIGK K   GR+         N  
Sbjct: 236 HIGKDKYKGGRIKRILGKGKDNQL 259



 Score = 95.4 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 466 KYIQEYNFLRSLLKSLVLTSKN-LSSTSISFKQDGKTRTA----YEFLSYPDFSIQNLFS 520
           K     N + ++LKS V  S N L +     ++D   ++A       L     +   L++
Sbjct: 699 KKKNGINTVYNILKSGVECSLNVLQNKLKEVEKDDILKSAPLNKQNNLDIYRDNYDILYN 758

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS--LPALSN 578
           +  +    ++ ++E    E  Y++Y  +Q+ E  +I       IPK   Y     P LSN
Sbjct: 759 LNFNDILINNSILETACAEVKYSSYLKKQITEINKINSNFNLAIPKTIKYDRNNFPYLSN 818

Query: 579 ELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           E  EKL+  +P NL +A+KIEG+T + +  L  YI K   K  
Sbjct: 819 EEIEKLNKFRPSNLDEANKIEGVTMSGIYYLYHYIMKEKKKTK 861


>gi|255550540|ref|XP_002516320.1| glucose inhibited division protein A, putative [Ricinus communis]
 gi|223544550|gb|EEF46067.1| glucose inhibited division protein A, putative [Ricinus communis]
          Length = 319

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/291 (38%), Positives = 176/291 (60%), Gaps = 2/291 (0%)

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393
           ++RP YA+EYD++   +   +L TKK+ GLF +GQINGTTGYEEAAAQG+++GIN+AR S
Sbjct: 1   MLRPAYAVEYDFLPAHQCSRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHS 60

Query: 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
           +    I   R  SYIG +IDDL +K + EPYR+ TSR+E+R+ LR DNAD+RLTP+G ++
Sbjct: 61  DGKPLIVLERESSYIGTLIDDLITKDLREPYRVLTSRSEHRLLLRSDNADSRLTPLGHEI 120

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS--TSISFKQDGKTRTAYEFLSYP 511
           G I +RR   +       +  +  LK++ ++   L++  T +S +    + T    L  P
Sbjct: 121 GLIDDRRWGLYQDKQARISEEKKRLKTVRISGGELAADVTCLSRQPVKGSSTLESLLKKP 180

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
               + L          S    E ++I+  Y  +  RQ I+ +++  ++ R +P+D DY 
Sbjct: 181 HIQYRVLDKHGFGNELLSREEKECVEIDIKYEGFIIRQQIQLQQMAHQQNRPLPEDLDYY 240

Query: 572 SLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           ++  LS E +EKLS ++P  + QAS+I G++PA +  LLI ++ N  K  E
Sbjct: 241 AMTTLSLEAREKLSKVRPQTIGQASRIAGVSPADITALLIILEANRRKAQE 291


>gi|82915018|ref|XP_728939.1| glucose inhibited division protein A [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23485627|gb|EAA20504.1| Glucose inhibited division protein A [Plasmodium yoelii yoelii]
          Length = 842

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 146/329 (44%), Positives = 193/329 (58%), Gaps = 12/329 (3%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---- 229
           + +  + +L     + +F+  R+KTGTP RL   +I +D  EK    E+  PF F     
Sbjct: 292 LIEESTKNLATQLKENNFEIKRMKTGTPPRLCKNSINFDILEK-EGTEKKHPFYFSFLNS 350

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGER 288
                N+ + C  T TN++TH ++++ +     +   D    GPRYCPSI  K+ +F E+
Sbjct: 351 NKINNNKTLPCYKTYTNIKTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEK 410

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H I+LEPEG N  ++YPNG+S+A P   Q + I +I GLE   I+ P Y +EY Y+NP
Sbjct: 411 KKHIIWLEPEGFNNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDVEYFYVNP 470

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI------CFS 402
           K L  TLETK I+GLFL+GQI GTTGYEEAA QG+VAGIN+A  S K   I        +
Sbjct: 471 KCLNYTLETKIINGLFLSGQICGTTGYEEAACQGIVAGINAALNSLKKKNISSINNFVLT 530

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           R DSYIGV+I DL +KG+ EPYRMFTSRAEYR+ LRPDNAD RLTP   KLG   + R  
Sbjct: 531 RNDSYIGVLIHDLINKGITEPYRMFTSRAEYRLYLRPDNADIRLTPKAEKLGIASKERLY 590

Query: 463 RFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
                    N + S+ K L L +      
Sbjct: 591 ILNHKYYSVNKIISIFKKLTLNNSENQRL 619



 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 120/206 (58%), Gaps = 20/206 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIVIGGGH+GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EI
Sbjct: 43  EKKYDVIVIGGGHSGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEI 102

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++ 
Sbjct: 103 DALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILEN 162

Query: 123 EVAGFNTEKNI--------------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            V     E ++                    +  I  + +       V+LTTGTFL G+ 
Sbjct: 163 TVHSLLIENSMTRNDSTNMDENMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGIC 222

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFMK 188
           HIGK K   GR+         N    
Sbjct: 223 HIGKDKYKGGRIKRILGKGKDNQLKD 248



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
           +   ++++  +    ++ ++E    E  Y++Y  +Q+ E  +IK      IPK   Y  
Sbjct: 784 NYDIIYNLNFNEILINNSILETACAEVKYSSYLKKQISEINKIKSNFNLAIPKTIKYDR 842


>gi|205371920|ref|ZP_03224740.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacillus coahuilensis m4-4]
          Length = 283

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 98/264 (37%), Positives = 157/264 (59%), Gaps = 3/264 (1%)

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK   L+ AGQINGT+GYEEAA QGL+AG+N+A  +   D +  SR+D+YIGV+IDDL +
Sbjct: 13  KKYKNLYTAGQINGTSGYEEAAGQGLIAGLNAALNALGKDQLILSRSDAYIGVLIDDLIT 72

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYR+ TSRAEYR+ LR DNAD RLT IG ++G I + R  RF +  +      + 
Sbjct: 73  KGTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGHRVGLISDERYDRFLEKKRLIEEEMAR 132

Query: 478 LKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           L S+ +     + T I      +      A + L  P+   +++  +     + +  + E
Sbjct: 133 LSSIRIKPTVATQTLIREVGGSELKDGILASDLLKRPEMEYRHIEQLTASTVELTDDIKE 192

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  + + +   +K  E + IP   DY ++  L++E ++KL  ++P ++ Q
Sbjct: 193 QVEIQLKYEGYIEKSLQQVDRLKKMENKKIPDLIDYDAINGLASEARQKLKEVRPLSIAQ 252

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+ PA +++LL+YI++  V
Sbjct: 253 ASRISGVNPADISILLVYIEQGKV 276


>gi|99034211|ref|ZP_01314284.1| hypothetical protein Wendoof_01000922 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 302

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 148/276 (53%), Positives = 183/276 (66%), Gaps = 8/276 (2%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
           +T LITHK STIG MSCNPAIGG+ KG +VRE+DALDG+MGR  D A I   +LN  +G 
Sbjct: 28  NTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDQASIHSVILNSSRGA 87

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSM 144
           AV GPR QADR+LY+ A+Q  IL+  NL V +  V  F  E N      I +++      
Sbjct: 88  AVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEH 147

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           I  S VVLTTGTFLRGVIHIG+   P+GRMGD P+  L N+  K++F  GRL+TGTP RL
Sbjct: 148 ILTSKVVLTTGTFLRGVIHIGEQVTPSGRMGDKPAVELANTLKKYNFKLGRLRTGTPPRL 207

Query: 205 DGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA-IY 263
           D  TI W   ++Q  D   +PFS++T+KI   Q+ C IT TN  TH+II EN+  SA  Y
Sbjct: 208 DRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSY 267

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
             DI    PRYCPSIE K+ +F E++ HQIFLEPEG
Sbjct: 268 LDDI--IAPRYCPSIEVKVNKFAEKSSHQIFLEPEG 301


>gi|207108211|ref|ZP_03242373.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 265

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 114/263 (43%), Positives = 160/263 (60%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++V+GGGHAG EA+ +AAK+GA   LIT    TIG  SCNPAIGGLGKGHL +E
Sbjct: 1   MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +D L G MG + D +G+Q+RVLN  KGPAVRG R Q D + YR+  +  +L+  NL V Q
Sbjct: 61  VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ 120

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   + + +  +    N+  +   V++TTGTFL+GV+HIG+ +   GR G++ SNS
Sbjct: 121 EMTESLIIKNDEVVGVTTNINNTYKAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS 180

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +     F   RLKTGT  R+ G +I ++  E+ F D     FS+ T      Q+ C 
Sbjct: 181 LALNLRDLGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF 240

Query: 242 ITRTNLETHRIIMENIKHSAIYS 264
           IT TNL TH+II +N   + ++S
Sbjct: 241 ITYTNLITHQIIRDNFHRAPLFS 263


>gi|52080215|ref|YP_079006.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus licheniformis ATCC
           14580]
 gi|52785592|ref|YP_091421.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus licheniformis ATCC
           14580]
 gi|319646006|ref|ZP_08000236.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Bacillus sp. BT1B_CT2]
 gi|81170594|sp|Q65JN6|TRMFO_BACLD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|52003426|gb|AAU23368.1| glucose-inhibited division protein [Bacillus licheniformis ATCC
           14580]
 gi|52348094|gb|AAU40728.1| Gid [Bacillus licheniformis ATCC 14580]
 gi|317391756|gb|EFV72553.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Bacillus sp. BT1B_CT2]
          Length = 434

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/492 (22%), Positives = 180/492 (36%), Gaps = 73/492 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +N++  V VIG G AG EAA   AK G +  L           H T     + C+ ++  
Sbjct: 1   MNQT--VNVIGAGLAGSEAAWQLAKRGINVRLYEMRPVKQTPAHHTDKFAELVCSNSLRA 58

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD  +   AD                  G     DR  +   + 
Sbjct: 59  NSLTNAVGVLKEEMRVLDSAIIAAADEC------------SVPAGGALAVDRHEFAANVT 106

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +  N+ V+  EV        II             +T  LT+      +  +    
Sbjct: 107 EKVKNHPNVTVLHEEVTEIPEGPTII-------------ATGPLTSEALSAKLRELTGED 153

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P     +  M   +   R   G  A L         TE++F  +R      
Sbjct: 154 YLYFYDAAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALV 206

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             + +  ++ E  I         ++       A        +GP     +ED   + G+R
Sbjct: 207 SAETVPLKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEDP--KTGKR 257

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q + +R IPGLE+  I+R G      +IN 
Sbjct: 258 PYAVVQLRQDDAAGTLYNIVGFQTHLKWGDQKEVLRLIPGLEQAEIVRYGVMHRNTFINS 317

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L  T + KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + FS  ++ 
Sbjct: 318 PSLLKATYQFKKRDDLFFAGQMTGVEGYVESAASGLVAGINAARLIQGKEPVTFSN-ETA 376

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAK 466
           IG M   +T                 + + +P NA+  L   +G+K+    ER ++  ++
Sbjct: 377 IGSMAHYITE--------------TNKKNFQPMNANFGLFKELGVKIKNKQERNEQYASR 422

Query: 467 YIQEYNFLRSLL 478
            ++    +   L
Sbjct: 423 ALETIRNISKTL 434


>gi|16078676|ref|NP_389495.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309488|ref|ZP_03591335.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313813|ref|ZP_03595618.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318737|ref|ZP_03600031.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323008|ref|ZP_03604302.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183519|sp|P39815|TRMFO_BACSU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|2462971|emb|CAA04423.1| Gid protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633985|emb|CAB13486.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291484164|dbj|BAI85239.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           natto BEST195]
          Length = 435

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/486 (22%), Positives = 176/486 (36%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTPAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  +   AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIAAADEC------------SVPAGGALAVDRHEFAASVTNRVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  EV        II             +T  LT+ +    +  +          
Sbjct: 114 PNVTVINEEVTEIPEGPTII-------------ATGPLTSESLSAQLKELTGEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFHEALTSAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +E  +   G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHPV--TGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  S LF AGQ+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M  
Sbjct: 325 TYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGEELVIFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +K+    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVKIKNKKERNEQYANRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|296330828|ref|ZP_06873303.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674346|ref|YP_003866018.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151833|gb|EFG92707.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412590|gb|ADM37709.1| tRNA:m(5)U-54 methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 435

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 177/486 (36%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVNLFEMRPVKQTPAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  +   AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIAAADEC------------SVPAGGALAVDRHEFAASVTNRVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  EV G      II             +T  LT+ +    +  +          
Sbjct: 114 PNVTVINEEVTGIPEGPTII-------------ATGPLTSESLSAQLKELTGEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFHEALTSAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +E  +   G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHPV--TGKRPHAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  S LF AGQ+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M  
Sbjct: 325 TYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGEELVTFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +K+    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVKIKNKKERNEQYANRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|321315379|ref|YP_004207666.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis BSn5]
 gi|320021653|gb|ADV96639.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus subtilis BSn5]
          Length = 435

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 110/486 (22%), Positives = 176/486 (36%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTPAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  +   AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIAAADEC------------SVPAGGALAVDRHEFAASVTNRVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  EV        II             +T  LT+ +    +  +          
Sbjct: 114 PNVTVINEEVTEIPEGPTII-------------ATGPLTSESLSAQLKELTGEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFHEALTSAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +E  +   G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHPV--TGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  S LF AGQ+ G  GY E+AA GLVAGIN+A+     + + F + ++ IG M  
Sbjct: 325 TYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGEELVIFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +K+    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVKIKNKKERNEQYANRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|194015077|ref|ZP_03053694.1| tRNA:M(5)U-54 methyltransferase [Bacillus pumilus ATCC 7061]
 gi|194014103|gb|EDW23668.1| tRNA:M(5)U-54 methyltransferase [Bacillus pumilus ATCC 7061]
          Length = 434

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/489 (23%), Positives = 179/489 (36%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIAKRGIKVNLYEMRPVKQTPAHHTDKFAELVCSNSLRANALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD  +   AD +                G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSAIIAAADES------------SVPAGGALAVDRHEFAANVTDRVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V Q EV        II             +T  LT+    + +  +   +      
Sbjct: 113 PNVTVFQEEVQSIPEGPTII-------------ATGPLTSEALSKELKSLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 160 AAAPILEKDSIDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALISAETVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+  I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNIVGFQTHLKWGDQKEVFRLIPGLEEAEIVRYGVMHRNTFINSPSLLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GLVAGIN+AR     + +     ++ IG M  
Sbjct: 324 TYQFKNREDLFFAGQMTGVEGYVESAASGLVAGINAARFVKGEELVTLPE-ETAIGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY-IQEYN 472
            +T              +  + S +P NA+  L      LG   + +Q+R+A+Y  +   
Sbjct: 383 YIT--------------STNKKSFQPMNANFGLLK---DLGVRIKNKQERYAEYAKRAIE 425

Query: 473 FLRSLLKSL 481
            ++++ KSL
Sbjct: 426 TIQTISKSL 434


>gi|157692292|ref|YP_001486754.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pumilus SAFR-032]
 gi|166989558|sp|A8FD77|TRMFO_BACP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157681050|gb|ABV62194.1| glucose-inhibited division protein A [Bacillus pumilus SAFR-032]
          Length = 434

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/489 (23%), Positives = 179/489 (36%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIAKRGIKVNLYEMRPVKHTPAHHTDKFAELVCSNSLRANALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD  +   AD +                G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSAIIAAADES------------SVPAGGALAVDRHEFAANVTDRVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V Q EV        II             +T  LT+    + +  +   +      
Sbjct: 113 PNVTVFQEEVQSIPEGPTII-------------ATGPLTSEALSKELKSLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 160 AAAPILEKDSIDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALISAETVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+  I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNIVGFQTHLKWGDQKEVFRLIPGLEEAEIVRYGVMHRNTFINSPSLLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GLVAGIN+AR     + +     ++ IG M  
Sbjct: 324 TYQFKNREDLFFAGQMTGVEGYVESAASGLVAGINAARFVKGEELVTLPE-ETAIGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY-IQEYN 472
            +T              +  + S +P NA+  L      LG   + +Q+R+A+Y  +   
Sbjct: 383 YIT--------------STNKKSFQPMNANFGLLK---DLGVRIKNKQERYAEYAKRAIE 425

Query: 473 FLRSLLKSL 481
            ++++ KSL
Sbjct: 426 TIQTISKSL 434


>gi|308173575|ref|YP_003920280.1| tRNA:m(5)U-54 methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307606439|emb|CBI42810.1| tRNA:m(5)U-54 methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328553492|gb|AEB23984.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus amyloliquefaciens
           TA208]
 gi|328911716|gb|AEB63312.1| m(5)U-54 methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 435

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 182/486 (37%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTAAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  + + AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIQSADKC------------SVPAGGALAVDRHEFAQSVTDLVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        +I             +T  LT+ +  + +  +   +      
Sbjct: 114 PNVTVLHEEVTEIPEGPTVI-------------ATGPLTSESLSQQLKELTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFHEALTTAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V+I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVDIVRYGVMHRNTFINSPSLLNP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+ + LF AGQ+ G  GY E+AA GLVAGIN+A+     D + F + ++ IG M  
Sbjct: 325 TYQFKQRNDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGQDLVTFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +K+    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVKIKNKKERNEEYAKRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|212639575|ref|YP_002316095.1| glucose-inhibited division protein [Anoxybacillus flavithermus WK1]
 gi|259547945|sp|B7GGC8|TRMFO_ANOFW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|212561055|gb|ACJ34110.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           (glucose-inhibited division protein) [Anoxybacillus
           flavithermus WK1]
          Length = 432

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/489 (23%), Positives = 183/489 (37%), Gaps = 72/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIG G AG EAA   AK G    L           H T     + C+ ++       
Sbjct: 2   EVTVIGAGLAGSEAAWQLAKRGIRVKLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD ++ + AD+                 G     DR  +   + + + +
Sbjct: 62  AVGVLKEEMRRLDSVIMKAADSC------------SVPAGGALAVDRHEFAAKVTQMVTN 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V++ EV    T   II++  +    +     +   TG               A  
Sbjct: 110 HPNVTVVREEVTSIPTGPTIIATGPLTSQPL--SEQLQALTGE------EYLYFYDAAAP 161

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +  S  +   ++K  +D G          +   I    TE++F  ER        + +
Sbjct: 162 IVEKESIDMEKVYIKSRYDKG----------EAAYINCPMTEEEF--ERFYDALISAETV 209

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             ++ E  I         ++       A        +GP     +ED   R G+R    +
Sbjct: 210 PLKEFEKEIYFEGCMPIEVM-------ARRGKKTLLFGPMKPVGLEDP--RTGKRPFAVV 260

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q + IR IPGLE+  I+R G      +IN PK L 
Sbjct: 261 QLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRFIPGLEQAEIVRYGVMHRNTFINSPKLLK 320

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT + K+   LF AGQ+ G  GY E+AA GLVAGIN+A      + + F + ++ IG M 
Sbjct: 321 PTYQYKEREDLFFAGQMTGVEGYVESAASGLVAGINAAHYVLGKELVVFPQ-ETAIGSMA 379

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +TS                    +P NA+  L         I ++++K      +   
Sbjct: 380 HYITSANPKH--------------FQPMNANFGLF--APLDEMIKDKKKKNERYAERALE 423

Query: 473 FLRSLLKSL 481
            +++ LK L
Sbjct: 424 TIQNFLKKL 432


>gi|172057896|ref|YP_001814356.1| tRNA (uracil-5-)-methyltransferase Gid [Exiguobacterium sibiricum
           255-15]
 gi|205830333|sp|B1YIB2|TRMFO_EXIS2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|171990417|gb|ACB61339.1| gid protein [Exiguobacterium sibiricum 255-15]
          Length = 434

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/490 (22%), Positives = 168/490 (34%), Gaps = 76/490 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 4   VTVIGAGLAGSEAAWQLAKRGVQVDLYEMRPVKQTPAHHTDQFAELVCSNSLRANQLTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A                G     DR  +   +   + + 
Sbjct: 64  VGVLKEEMRQLDSLIMKAADLA------------SVPAGGALAVDRHDFAGYVTETLKNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+        I+             +T  LT+      +             
Sbjct: 112 PNVTVHHEELEAIPEGPTIV-------------ATGPLTSAALSESLKQFTGEDYLYFFD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P            +   R   G  A L+       + E       LI      + + 
Sbjct: 159 AAAPILDGDTIDRDKVYLKSRYDKGEAAYLNCPM---TEEEFTHFHNELIKA----EVVP 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         +        A        +GP     +ED   + G+R    + 
Sbjct: 212 LKEFEKEIYFEGCMPFEV-------LASRGPKTLLFGPMKPVGLEDP--KTGKRPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + IR IPGLE   I+R G      ++N P  L P
Sbjct: 263 LRQDNSAGTLFNLVGFQTHLKWGEQKRIIRLIPGLENAEIVRYGVMHRNTFVNSPNLLQP 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +T+    LF AGQ+ G  GY E+AA GL AGIN+AR  N+ + + F + ++ +G M  
Sbjct: 323 TYQTRTRHDLFFAGQMTGVEGYVESAASGLTAGINAARLVNEAEPVAFPK-ETMMGAMAH 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-RQKRFAKYIQEYN 472
            +T+                  + +P NA+  L P     G +G+  R K+  KY     
Sbjct: 382 YITTTE--------------GKNFQPMNANFGLVP-----GLVGQTGRMKKPEKYALLAE 422

Query: 473 FLRSLLKSLV 482
                +K   
Sbjct: 423 RALEAIKDFT 432


>gi|311030139|ref|ZP_07708229.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus sp. m3-13]
          Length = 434

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/480 (22%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLANKGIQVHLYEMRPVKQTPAHHTDKFAELVCSNSLRANNLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R AD   +              G     DR  +   +   +   
Sbjct: 66  VGVLKEEMRMLDSVIIRSADDCAV------------PAGGALAVDRHEFAAKVTERVKEH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+        II             +T  LT+      +  +   +      
Sbjct: 114 PNVTVFNEEMEQIPEGPTII-------------ATGPLTSKALSDQLRSLTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE+QF   R        + + 
Sbjct: 161 AAAPIIEKDSINMDIVYLKSRYDKGEAAYL-----NCPMTEEQF--NRFYDALVEAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   +  +R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------ANRGKKTMLFGPLKPVGLEDP--KTDKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + IR IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFINSPNLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AG+N+AR     + + F + ++ IG M  
Sbjct: 325 TYQFKEREDLFFAGQMTGVEGYVESAASGLIAGMNAARLVLGEEPLVFPK-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +    + +P NA+  L P +  K+    ER +    + ++   
Sbjct: 384 YIT--------------STNAKNFQPMNANFGLFPDLPKKIKNKQERNEAHARRALETIQ 429


>gi|154686029|ref|YP_001421190.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus amyloliquefaciens
           FZB42]
 gi|171855000|sp|A7Z4N3|TRMFO_BACA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154351880|gb|ABS73959.1| Gid [Bacillus amyloliquefaciens FZB42]
          Length = 435

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 183/486 (37%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVRQTAAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  + + AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIQSADKC------------SVPAGGALAVDRHEFAQSVTDLVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        +I             +T  LT+ +  + +  +   +      
Sbjct: 114 PNVTVLTEEVTEIPEGPTVI-------------ATGPLTSESLSQQLKELTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M+  +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMEKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALTTAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V+I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVDIVRYGVMHRNTFINSPSLLNP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+ + LF AGQ+ G  GY E+AA GLVAGIN+A+     D + F + ++ IG M  
Sbjct: 325 TYQFKQRNDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLGQDLVTFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +K+    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVKIKNKKERNEEYAKRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|323701840|ref|ZP_08113510.1| gid protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533144|gb|EGB23013.1| gid protein [Desulfotomaculum nigrificans DSM 574]
          Length = 443

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/476 (22%), Positives = 172/476 (36%), Gaps = 50/476 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V+VIG G AG EAA   A+ G    L   +          P    L   + +R     +A
Sbjct: 6   VMVIGAGLAGSEAAWQIARRGIKVDLFEMRPRKFTPAHHTPYFSELVCSNSLRAAALENA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE + L + + +     +D+ + EV
Sbjct: 66  VGLLKEEMRLLGSLIINAADRHRVPA--GGALAVDREGFSLDVTQALEQHPLVDIHREEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +  +I             ++  LT+    + +  +   +        +P  +L +
Sbjct: 124 TDIPKDGLVII------------ASGPLTSEPLAQTIARLTGDQYLYFYDAAAPIVTLES 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G  A L+      DK E +   + L+      ++   ++ E  I  
Sbjct: 172 LDMSKIFRASRYGKGEEAYLNCPM---DKDEYETFYDALVNA----ERAPLKEFEKQIHF 224

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  +        A    D   YGP     + D   R G+R    + L  +     +
Sbjct: 225 EGCMPVEV-------LAARGRDTLLYGPLKPVGLTDP--RTGKRPYAVVQLRQDNAEGTL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    IPG+     +R G      YIN P  L PTL+ K    +
Sbjct: 276 YNLVGFQTNLKWGEQKRVFSLIPGMANAEFVRYGVMHRNTYINSPTLLKPTLQLKSQERI 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQI G  GY E+AA GLVAGIN+AR +     + F    ++ G ++  +TS      
Sbjct: 336 FLAGQITGVEGYVESAAAGLVAGINAARMAKGQAPVEFPPETAH-GALLHYITSAPS--- 391

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                       + +P N    L P +  K+    ER +    + ++        L
Sbjct: 392 -----------GNFQPMNVTFGLFPDLPTKIKGKRERGKAHAQRALESLKQFIFKL 436


>gi|224476374|ref|YP_002633980.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254789176|sp|B9DPG3|TRMFO_STACT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222420981|emb|CAL27795.1| glucose-inhibited division protein gid [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 436

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 118/504 (23%), Positives = 183/504 (36%), Gaps = 101/504 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 6   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVRQTPAHHTDKFAELVCSNSLRGNSLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADAA +              G     DR  +   +   + S 
Sbjct: 66  VGVLKEEMRRLDSLIIKAADAARV------------PAGGALAVDRHDFAGYITDTLKSH 113

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            N++VI  E+        II +  +  +        +V  TG               A  
Sbjct: 114 PNVNVINEEIESIPEGYTIIATGPLTTEGL---AKEIVEITGE------DQLYFYDAAAP 164

Query: 174 MGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADE 221
           + +  S  +   ++K  +D G                   A L+ +    ++ EK+   E
Sbjct: 165 IIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEEEFDRFYDAVLEAEAAPVNEFEKEKYFE 224

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +PF  M ++                                     +GP     +ED 
Sbjct: 225 GCMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP 253

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
             + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G   
Sbjct: 254 --KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMH 311

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +IN P  L  T + K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + 
Sbjct: 312 RNTFINSPDVLSETYQLKGNDHLYFAGQMTGVEGYVESAASGLVAGINVAHKLQDKAEVV 371

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F R ++ IG M   +             S A    + +P NA+  L P       + +R 
Sbjct: 372 FPR-ETMIGSMAYYI-------------SHANNNKNFQPMNANFGLVP------SLEKRI 411

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLT 484
           + +  +Y Q+ N   + L++   T
Sbjct: 412 KDKKERYEQQANRALTYLENFKQT 435


>gi|319649575|ref|ZP_08003731.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
 gi|317398737|gb|EFV79419.1| glucose-inhibited division protein A [Bacillus sp. 2_A_57_CT2]
          Length = 435

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 172/486 (35%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLASRGIKVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD++ +              G     DR  +   +  ++ + 
Sbjct: 66  VGVLKEEMRKLNSVIIHSADSSAV------------PAGGALAVDRHDFAARVTEQVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  EV        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVINEEVTDIPEGPTVI-------------ATGPLTSEALSGKLKELSGEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPILEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALTTAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------ANRGKKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + IR IPGLE   I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFINSPKVLRA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GLVAGIN+AR     D I F   ++ IG M  
Sbjct: 325 TYQFKNRDDLFFAGQMTGVEGYVESAASGLVAGINAARLVKGEDPIEFPH-ETAIGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                  S +P NA+  L P +  K+    ER +K   + +    
Sbjct: 384 YITTANP--------------KSFQPMNANFGLFPELPEKIRGKKERNEKHAERALGTIQ 429

Query: 473 FLRSLL 478
                L
Sbjct: 430 NFVKNL 435


>gi|312111687|ref|YP_003990003.1| gid protein [Geobacillus sp. Y4.1MC1]
 gi|311216788|gb|ADP75392.1| gid protein [Geobacillus sp. Y4.1MC1]
          Length = 440

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 180/495 (36%), Gaps = 75/495 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+N    V VIG G AG EAA   A  G    L           H T     + C+ ++ 
Sbjct: 1   MVNER-TVTVIGAGLAGSEAAWQLANRGIHVRLYEMRPVKQTPAHHTDQFAELVCSNSLR 59

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L+ ++ + AD                  G     DR  +   +
Sbjct: 60  ANSLTNAVGVLKEEMRRLNSVIMKAADEC------------SVPAGSALAVDRHEFAARV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              +    N+ VI+ EV        II             +T  LT+      +  +   
Sbjct: 108 TNLVQGHPNVTVIREEVTDIPDGPTII-------------ATGPLTSPALSERLKELTGE 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +        +P     +  M   +   R   G  A      I    TE++F   R     
Sbjct: 155 EYLYFYDAAAPIVEKDSINMDKVYVKSRYDKGEAAY-----INCPMTEEEF--NRFYEAL 207

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++       A        +GP     +ED   R G+
Sbjct: 208 VSAETVPLKEFEKEIYFEGCMPIEVM-------ARRGKQTLLFGPMKPVGLEDP--RTGK 258

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q + IR IPGLE   I+R G      +IN
Sbjct: 259 RPYAVVQLRQDNAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENAEIVRYGVMHRNTFIN 318

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L PT + K+   LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F R ++
Sbjct: 319 SPKLLRPTYQYKERDDLFFAGQMTGVEGYVESAASGLVAGINAARLVLGQDLLVFPR-ET 377

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFA 465
            IG M   +TS                    +P NA+  L  P+  K+    +++Q+   
Sbjct: 378 AIGSMAHYITSANPNH--------------FQPMNANFGLFAPLEEKIR---DKQQRNER 420

Query: 466 KYIQEYNFLRSLLKS 480
              +  + +++ +KS
Sbjct: 421 YAQRALDTIQNFVKS 435


>gi|295399801|ref|ZP_06809782.1| gid protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978204|gb|EFG53801.1| gid protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 440

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 180/495 (36%), Gaps = 75/495 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+N    V VIG G AG EAA   A  G    L           H T     + C+ ++ 
Sbjct: 1   MVNER-TVTVIGAGLAGSEAAWQLANRGIHVRLYEMRPVKQTPAHHTDQFAELVCSNSLR 59

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L+ ++ + AD                  G     DR  +   +
Sbjct: 60  ANSLTNAVGVLKEEMRRLNSVIMKAADEC------------SVPAGSALAVDRHEFAARV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              +    N+ VI+ EV        II             +T  LT+      +  +   
Sbjct: 108 TNLVQGHPNVTVIREEVTDIPDGPTII-------------ATGPLTSPALSERLKELTGE 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +        +P     +  M   +   R   G  A      I    TE++F   R     
Sbjct: 155 EYLYFYDAAAPIVEKDSINMDKVYVKSRYDKGEAAY-----INCPMTEEEF--NRFYEAL 207

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++       A        +GP     +ED   R G+
Sbjct: 208 VSAETVPLKEFEKEIYFEGCMPIEVM-------ARRGKQTLLFGPMKPVGLEDP--RTGK 258

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q + IR IPGLE   I+R G      +IN
Sbjct: 259 RPYAVVQLRQDNAVGTLYNIVGFQTHLKWGAQKEVIRLIPGLENAEIVRYGVMHRNTFIN 318

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L PT + K+   LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F R ++
Sbjct: 319 SPKLLRPTYQYKERDDLFFAGQMTGVEGYVESAASGLVAGINAARLVLGQDLLVFPR-ET 377

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFA 465
            IG M   +TS                    +P NA+  L  P+  K+    +++Q+   
Sbjct: 378 AIGSMAHYITSANPNH--------------FQPMNANFGLFAPLEEKIR---DKQQRNER 420

Query: 466 KYIQEYNFLRSLLKS 480
              +  + +++ +KS
Sbjct: 421 YAQRALDTIQNFVKS 435


>gi|89098653|ref|ZP_01171535.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
 gi|89086615|gb|EAR65734.1| glucose-inhibited division protein A [Bacillus sp. NRRL B-14911]
          Length = 435

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/480 (22%), Positives = 181/480 (37%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   INVIGAGLAGSEAAWQIAKRGIKVNLYEMRPVKQTPAHHTDKFAELVCSNSLRANNLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   ADA  +              G     DR  +   +  ++ + 
Sbjct: 66  VGVLKEEMRMLDSVIINSADACAV------------PAGGALAVDRHEFAGKVTEQVRNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        +I++  +   S      +   TG               A  +
Sbjct: 114 PNVTVMNEEVTEIPEGITVIATGPLT--SESLSKQLKELTGE------DHLYFYDAAAPI 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S ++  +++K  +D G          +   I    TE++F  E         + + 
Sbjct: 166 IEKDSINMEKAYLKSRYDKG----------EAAYINCPMTEEEF--ETFYNALISAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   R G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------ANRGKKTMLFGPMKPVGLEDP--RTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + +R IPGLE+  I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLRLIPGLEEAEIVRYGVMHRNTFINSPKVLEA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + +   GLF AGQ+ G  GY E+AA GL+AGIN+AR +   + + F   ++ IG M  
Sbjct: 325 TYQFRNRDGLFFAGQMTGVEGYVESAASGLIAGINAARLAEGKELLEFPH-ETAIGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                  + +P NA+  L P + +K+    ER ++   + ++   
Sbjct: 384 YITT--------------TNSKNFQPMNANFGLFPELPVKIKGKQERNEQHANRALETIQ 429


>gi|320528985|ref|ZP_08030077.1| tRNA:M(5)U-54 methyltransferase [Selenomonas artemidis F0399]
 gi|320138615|gb|EFW30505.1| tRNA:M(5)U-54 methyltransferase [Selenomonas artemidis F0399]
          Length = 443

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 106/487 (21%), Positives = 172/487 (35%), Gaps = 67/487 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GA   L           HKT     + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAARRGAEVTLFEMRPGRTSPAHKTDDFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ R ADA  +              G     DR  +   +  +I + 
Sbjct: 64  VGVLKEEMRRMDSLIIRAADATAV------------PAGGALAVDRRGFSRYITEQITAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ + + E+     +++ +  +++            LT+G     +  +          
Sbjct: 112 PNISIRREEIKTVPRDEDAV--VIIASG--------PLTSGALADEIHALLGDDALYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G P+ L+      +        E         +K  
Sbjct: 162 AAAPLVDAASIDMTQAYRASRYGKGDPSYLNCPMNDRE-------YEAFWQALTAAEKAD 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E  I         ++       A    D   +GP     +E      GER    + 
Sbjct: 215 VHDFEKEIFFEGCMPVEVM-------ASRGKDTLLFGPLKPMGLEHP--ETGERPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGL     +R G      +IN P+ L P
Sbjct: 266 LRQDNAEGTIYNIVGFQTRLKWAEQRRVFRMIPGLSHAEFLRYGVMHRNTFINAPRHLRP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + +  + LF AGQ+ G  GY E+AA GL AGIN+AR +     + F +T  + G +  
Sbjct: 326 TFQLRSENTLFFAGQMTGVEGYVESAASGLTAGINAARIAADRTPVVFPQTTCH-GALAH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T+                    +P N +  L P    L     + +K+     +    
Sbjct: 385 YITTCDPAH--------------FQPMNINFGLLPPLEDLPRRTRKPEKKLLTARRALAA 430

Query: 474 LRSLLKS 480
           L   L+ 
Sbjct: 431 LDDFLQE 437


>gi|313895653|ref|ZP_07829209.1| tRNA:m(5)U-54 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975779|gb|EFR41238.1| tRNA:m(5)U-54 methyltransferase [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 443

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 106/487 (21%), Positives = 173/487 (35%), Gaps = 67/487 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GA   L           HKT     + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAARRGAEVTLFEMRPGRTSPAHKTDDFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ R ADA  +              G     DR  +   +  +I + 
Sbjct: 64  VGVLKEEMRRMDSLIIRAADATAV------------PAGGALAVDRRRFSRYITEQITAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ + + E+     +++ +  +++            LT+G     +  +          
Sbjct: 112 PNISIRREEIKAVPRDEDAV--VIIASG--------PLTSGALADEIHALLGDDALYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G P+ L+      +        E         +K  
Sbjct: 162 AAAPLVDAASIDMTQAYRASRYGKGEPSYLNCPMNDRE-------YEAFWQALTAAEKAD 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E  I         ++       A    D   +GP     +E      GER+   + 
Sbjct: 215 VHDFEKEIFFEGCMPVEVM-------ASRGKDTLLFGPLKPMGLEHP--ETGERSYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGL     +R G      +IN P+ L P
Sbjct: 266 LRQDNAEGTIYNIVGFQTRLKWAEQRRVFRMIPGLSHAEFLRYGVMHRNTFINAPRHLRP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + +  + LF AGQ+ G  GY E+AA GL AGIN+AR +     + F +T  + G +  
Sbjct: 326 TFQLRSENTLFFAGQMTGVEGYVESAASGLTAGINAARIAADRTPVVFPQTTCH-GALAH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T+                    +P N +  L P    L     + +K+     +    
Sbjct: 385 YITTCDPAH--------------FQPMNINFGLLPPLEDLPRRTRKPEKKLLTARRALAA 430

Query: 474 LRSLLKS 480
           L   L+ 
Sbjct: 431 LDDFLQE 437


>gi|229013015|ref|ZP_04170180.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides DSM 2048]
 gi|229061435|ref|ZP_04198780.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH603]
 gi|228717858|gb|EEL69506.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH603]
 gi|228748269|gb|EEL98129.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides DSM 2048]
          Length = 434

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKKLTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L TP+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFTPLEKKIKKKQERNEAYATRALETIQ 429


>gi|239826605|ref|YP_002949229.1| gid protein [Geobacillus sp. WCH70]
 gi|239806898|gb|ACS23963.1| gid protein [Geobacillus sp. WCH70]
          Length = 440

 Score =  282 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 113/494 (22%), Positives = 179/494 (36%), Gaps = 73/494 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+N    V VIG G AG EAA   A  G    L           H T     + C+ ++ 
Sbjct: 1   MVNER-TVNVIGAGLAGSEAAWQLANRGIHVRLYEMRPVKQTPAHHTDKFAELVCSNSLR 59

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L+ ++ + AD                  G     DR  +   +
Sbjct: 60  ANSLTNAVGVLKEEMRRLNSVIMKAADEC------------SVPAGSALAVDRHEFAARV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              +    N+ VI+ EV    +   II             +T  LT+      +  +   
Sbjct: 108 TNLVQGHPNVTVIREEVTEIPSGPTII-------------ATGPLTSKALSERLKELTGE 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +        +P     +  M   +   R   G  A      I    TE++F  +R     
Sbjct: 155 EYLYFYDAAAPIIEKESINMDKAYVKSRYDKGEAAY-----INCPMTEEEF--DRFYEAL 207

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++       A        +GP     +ED   R G+
Sbjct: 208 ISAETVPLKEFEKEIYFEGCMPIEVM-------ARRGKKTLLFGPMKPVGLEDP--RTGK 258

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q + IR IPGLE   I+R G      +IN
Sbjct: 259 RPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVIRLIPGLENAEIVRYGVMHRNTFIN 318

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L PT + K+   LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F R ++
Sbjct: 319 SPKLLRPTYQYKERDDLFFAGQMTGVEGYVESAASGLVAGINAARLVLGQELVVFPR-ET 377

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            IG M   +TS                    +P NA+  L     +   I +++++    
Sbjct: 378 AIGSMAHYITSTNPNH--------------FQPMNANFGLFAPLEE--KIKDKQRRNERY 421

Query: 467 YIQEYNFLRSLLKS 480
             +  + +++ +K 
Sbjct: 422 AQRALDTIQNFIKK 435


>gi|163941570|ref|YP_001646454.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus weihenstephanensis
           KBAB4]
 gi|229134639|ref|ZP_04263449.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST196]
 gi|229168571|ref|ZP_04296294.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH621]
 gi|205830323|sp|A9VT70|TRMFO_BACWK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|163863767|gb|ABY44826.1| gid protein [Bacillus weihenstephanensis KBAB4]
 gi|228614977|gb|EEK72079.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH621]
 gi|228648900|gb|EEL04925.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST196]
          Length = 434

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKKLTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L TP+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFTPLEKKIKKKQERNEAYATRALETIQ 429


>gi|255025464|ref|ZP_05297450.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J2-003]
          Length = 255

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 141/249 (56%), Gaps = 7/249 (2%)

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           YEEAA QGL+AGIN+ARK  + + +   R  +YIGV+IDDL +KG  EPYR+ TSRAEYR
Sbjct: 1   YEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYR 60

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKN-----LS 489
           + LR DNAD RLT IG ++G I + R +RF          +  L+   +         L 
Sbjct: 61  LLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLK 120

Query: 490 STSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQ 549
                  +DG    A + L  P+ +   +  I       +  + E+++I+  Y  Y  + 
Sbjct: 121 EIGSGELKDGI--LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKS 178

Query: 550 MIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLL 609
            ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G+ PA +++L
Sbjct: 179 NLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISIL 238

Query: 610 LIYIKKNTV 618
           L+YI++  +
Sbjct: 239 LVYIEQGKI 247


>gi|242373542|ref|ZP_04819116.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           M23864:W1]
 gi|242348905|gb|EES40507.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           M23864:W1]
          Length = 436

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/505 (22%), Positives = 186/505 (36%), Gaps = 96/505 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+ ++  V V+G G AG EAA   A+ G    LI          H T     + C+ ++ 
Sbjct: 1   MMTQT--VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLR 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD L+ + AD A +              G     DR  +   +
Sbjct: 59  GNSLTNAVGVLKEEMRRLDSLIIQAADKARV------------PAGGALAVDRHDFAGYI 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +  N+ V+  EV        II++  +          +V  TG   +  ++    
Sbjct: 107 TDTLRNHPNVTVLNEEVNSIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD- 160

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTE 215
              A  + +  +  +   ++K  +D G                   A L+ +    ++ E
Sbjct: 161 --AAAPIVEKETIDMNKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFE 218

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           K+   E  +PF  M ++                                     +GP   
Sbjct: 219 KEKYFEGCMPFEVMAER-------------------------------GRKTLLFGPMKP 247

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
             +ED   + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+
Sbjct: 248 VGLEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIV 305

Query: 336 RPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      +IN P  L    E +    L+ AGQ+ G  GY E+AA GLVAGIN A K  
Sbjct: 306 RYGVMHRNTFINSPDVLNEKYELEGHENLYFAGQMTGVEGYVESAASGLVAGINLAHKLA 365

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKL 453
               + F R ++ IG M   +             S A+   + +P NA+  L P +  ++
Sbjct: 366 GKGEVIFPR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKRI 411

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLL 478
               ER + +  + ++  +  +  L
Sbjct: 412 KDKKERYEAQANRALEYLDNYKQTL 436


>gi|319401459|gb|EFV89669.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis FRI909]
          Length = 435

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAFYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 416 RYETQAKRALEYLDNYKQTL 435


>gi|296133057|ref|YP_003640304.1| gid protein [Thermincola sp. JR]
 gi|296031635|gb|ADG82403.1| gid protein [Thermincola potens JR]
          Length = 435

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 168/477 (35%), Gaps = 51/477 (10%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DAL 65
           ++IG G AG EAA  A   G    L   +   +           L   + +R     +A+
Sbjct: 6   VIIGAGLAGSEAAWQAVNRGVRVKLYEMRPRKMAPAHTTAYFAELVCSNSLRAAGMENAV 65

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +     +  +  +  + PA  G     DR+ +   +  E+ +   +++++ EV 
Sbjct: 66  GLLKEEMRIMNSLIMKCADANRVPA--GGALAVDRQKFAAQVTAELENHPLVEIVREEVT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I             +T  LT+      +  +            +P  +  + 
Sbjct: 124 SVPNDGPAII------------ATGPLTSEAMAASIKELTGEDYLYFYDAAAPIVTYESL 171

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                +   R   G     D   +    T++Q+  E         + +  +  E  I   
Sbjct: 172 NHDVIYRASRYGKG-----DADYLNCPMTKEQY--ESFWHELTSAETVPLKTFEKEIFFE 224

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                  +       A        +GP     +E+   + GER    + L  + +   + 
Sbjct: 225 GCMPIEAM-------AARGMKTLLFGPMKPVGLENP--KTGERPYAVVQLRQDDMEGTLY 275

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T L    Q +  R IPGLEK   +R G      +IN P  L PT + +K   LF
Sbjct: 276 NIVGFQTHLKWGEQQRVFRMIPGLEKAEFVRYGVMHRNTFINSPTVLEPTFQFRKRKDLF 335

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+AGIN+AR     + + F    ++ G +   +T+       
Sbjct: 336 FAGQITGVEGYVESAAAGLMAGINAARLVKGQEPVVFPPATAH-GALSHYITTANP---- 390

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
                      S +P N +  L P   +   I +++ K      +    L +   +L
Sbjct: 391 ----------ASFQPMNINFGLLPPLEER--IKDKKMKNRLISERAVITLENFKNNL 435


>gi|218231463|ref|YP_002368633.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus B4264]
 gi|228922586|ref|ZP_04085886.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954108|ref|ZP_04116137.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960048|ref|ZP_04121712.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229071330|ref|ZP_04204553.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus F65185]
 gi|229081087|ref|ZP_04213597.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock4-2]
 gi|229146403|ref|ZP_04274774.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST24]
 gi|229152031|ref|ZP_04280226.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1550]
 gi|229180108|ref|ZP_04307452.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 172560W]
 gi|229192001|ref|ZP_04318971.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 10876]
 gi|296504327|ref|YP_003666027.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           BMB171]
 gi|226707905|sp|B7HDV5|TRMFO_BACC4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|218159420|gb|ACK59412.1| gid protein [Bacillus cereus B4264]
 gi|228591552|gb|EEK49401.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 10876]
 gi|228603317|gb|EEK60794.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 172560W]
 gi|228631380|gb|EEK88014.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1550]
 gi|228637036|gb|EEK93495.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST24]
 gi|228702131|gb|EEL54607.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock4-2]
 gi|228711784|gb|EEL63736.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus F65185]
 gi|228799564|gb|EEM46517.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805674|gb|EEM52264.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837015|gb|EEM82356.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|296325379|gb|ADH08307.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           BMB171]
          Length = 434

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 168/479 (35%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITDIPEGPTII-------------ATGPLTSPDLSAKLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +   A+ ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYAARALETI 428


>gi|18920704|gb|AAL82395.1|AF469111_1 MTO1 isoform 2 [Homo sapiens]
          Length = 313

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/280 (45%), Positives = 172/280 (61%), Gaps = 13/280 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIVIGGGHAG EAA  AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 36  HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 95

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           LDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY+  MQ+EIL+   L V +G V
Sbjct: 96  LDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAV 155

Query: 125 AGFN--------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
                       T K  +S +V+ D S +   +V+LTTGTFLRG+I IG    PAGR+GD
Sbjct: 156 EDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGD 215

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-- 234
            PS  L  +  K  F  GRLKTGTP R+  ++I +    K   D   IPFSF  + +   
Sbjct: 216 QPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIK 275

Query: 235 -NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              Q+ C +T TN     I+++N++ ++         GPR
Sbjct: 276 PEDQLPCYLTHTNPRVDEIVLKNLQLNSHVKETT--RGPR 313


>gi|293366785|ref|ZP_06613461.1| glucose-inhibited division protein Gid [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319086|gb|EFE59456.1| glucose-inhibited division protein Gid [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 443

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 13  VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 73  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 121 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 172

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 173 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 232

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 233 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 260

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 261 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 319

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 320 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIF 379

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 380 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 423

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 424 RYETQAKRALEYLDNYKQTL 443


>gi|27467845|ref|NP_764482.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           ATCC 12228]
 gi|57866717|ref|YP_188399.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           RP62A]
 gi|33301130|sp|Q8CPH2|TRMFO_STAES RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170603|sp|Q5HPU1|TRMFO_STAEQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27315390|gb|AAO04524.1|AE016747_21 glucose-inhibited division protein gid [Staphylococcus epidermidis
           ATCC 12228]
 gi|57637375|gb|AAW54163.1| gid protein [Staphylococcus epidermidis RP62A]
 gi|329736365|gb|EGG72637.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU028]
 gi|329736552|gb|EGG72818.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU045]
          Length = 435

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 416 RYETQAKRALEYLDNYKQTL 435


>gi|288553073|ref|YP_003425008.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pseudofirmus OF4]
 gi|288544233|gb|ADC48116.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus pseudofirmus OF4]
          Length = 435

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 173/481 (35%), Gaps = 73/481 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++ + V VIG G AG EAA   AK G +  L           H T     + C+ ++ G
Sbjct: 1   MDQQH-VNVIGAGLAGSEAAWQLAKRGINVRLYEMRPVKQTPAHHTDKFAELVCSNSLRG 59

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++   AD +                G     DR  +   + 
Sbjct: 60  NSLTNAVGVLKEEMRKLDSVIISSADDS------------SVPAGGALAVDRHEFAQNVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             + +  N+ VI  E++       II +  +  +        +   TG            
Sbjct: 108 DRVKNHPNVTVINEEISEIPEGPTIIATGPLTSEGL---SKQLQALTG-----------E 153

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +        +P     +      +   R   G  A L         TE++F  +R     
Sbjct: 154 EYLYFYDAAAPIIETDSIDRDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEAL 206

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++       A        +GP     +E      G+
Sbjct: 207 ISAETVPLKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHP--ETGK 257

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +  +  +    G  T L    Q + ++ IPGLE   I+R G      +IN
Sbjct: 258 RPYAVVQLRQDNQSGTLYNIVGFQTHLKWGPQKEVLKLIPGLENAEIVRYGVMHRNTFIN 317

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L  T + K    LF AGQI G  GY E+AA GL+AGIN+AR  N  + + F   ++
Sbjct: 318 SPNLLKSTYQYKDREDLFFAGQITGVEGYVESAAAGLIAGINAARLVNNEELLTFPE-ET 376

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G M + +T+                  + +P NA+  L P   +     + R ++ A+
Sbjct: 377 VLGSMANYITTANP--------------KNFQPMNANFGLLPPLSERIKNKKERYEQLAE 422

Query: 467 Y 467
            
Sbjct: 423 R 423


>gi|30021920|ref|NP_833551.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus ATCC 14579]
 gi|229047518|ref|ZP_04193108.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH676]
 gi|229111303|ref|ZP_04240856.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-15]
 gi|229129108|ref|ZP_04258081.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-Cer4]
 gi|33301121|sp|Q819X4|TRMFO_BACCR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|29897476|gb|AAP10752.1| Glucose inhibited division protein A [Bacillus cereus ATCC 14579]
 gi|228654345|gb|EEL10210.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-Cer4]
 gi|228672079|gb|EEL27370.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-15]
 gi|228723765|gb|EEL75120.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH676]
          Length = 434

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 168/479 (35%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITDIPEGPTII-------------ATGPLTSPDLSAKLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +   A+ ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKVERNEAYAARALETI 428


>gi|329724333|gb|EGG60845.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU144]
          Length = 435

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKNSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 416 RYETQAKRALEYLDNYKQTL 435


>gi|282876317|ref|ZP_06285184.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus epidermidis SK135]
 gi|281295342|gb|EFA87869.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus epidermidis SK135]
          Length = 435

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 416 RYETQAKRSLEYLDNYKQTL 435


>gi|251810682|ref|ZP_04825155.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805842|gb|EES58499.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 443

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 13  VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 73  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 121 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 172

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 173 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 232

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 233 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 260

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 261 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 319

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 320 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIF 379

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 380 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 423

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 424 RYETQAKRSLEYLDNYKQTL 443


>gi|242242533|ref|ZP_04796978.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           W23144]
 gi|242233960|gb|EES36272.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus epidermidis
           W23144]
          Length = 443

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 13  VNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 73  VGVLKEEMRHLDSLIITSADKARV------------PAGGALAVDRHDFAGYITDTLRNH 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 121 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 172

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S ++   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 173 IEKDSINMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVATVNEFEKEKYFEG 232

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 233 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 260

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 261 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 319

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 320 NTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVIF 379

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 380 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 423

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  ++L
Sbjct: 424 RYETQAKRALEYLDNYKQTL 443


>gi|223985628|ref|ZP_03635678.1| hypothetical protein HOLDEFILI_02984 [Holdemania filiformis DSM
           12042]
 gi|223962395|gb|EEF66857.1| hypothetical protein HOLDEFILI_02984 [Holdemania filiformis DSM
           12042]
          Length = 436

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 112/483 (23%), Positives = 172/483 (35%), Gaps = 55/483 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V V+G G AGCEAA   A+ G +  L+  +   +           L   + +R     +A
Sbjct: 5   VTVVGAGLAGCEAAWQLAQRGIAVTLVEMRPEKMTPAHKTGKFAELVCSNSLRSDALTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +   V +  K PA  G     DRE +  A+  ++     ++V+  EV
Sbjct: 65  VGVLKAEMRRLDSVIMSVADQYKVPA--GSALAVDREAFSEAVTEKVSGHPLIEVVHREV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   II+S  +  +++ R         +F             A  + D  S     
Sbjct: 123 TEIPEGPCIIASGPLTSDALGRQIQAFFDQESFY--------FYDAAAPIIDKDSIDFTQ 174

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++ K  +D G          +   I     + QF        +F    I           
Sbjct: 175 AYYKSRYDKG----------EADYINCPMDKAQF-------EAFYDALIHAESAPVHEH- 216

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E +       +  A        +GP     +E      G R    + L  +     +
Sbjct: 217 -EKEIYFEGCMPFEEMARRGEKTLLFGPMKPVGLERPD---GSRPYAVVQLRQDNAAASM 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + +R IPGLE   I+R G      YIN P  L PT +T K   L
Sbjct: 273 YNVVGFQTHLKWPEQRRILRMIPGLENCEILRYGVMHRNSYINSPLCLRPTYQTVKREDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL AGI   R    L    F +T   IG M   +T       
Sbjct: 333 FFAGQMTGVEGYIESAASGLNAGIQCVRLVLGLTPEPFPQT-CMIGAMAHYITHADPKH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                         +P NA+  + P+  K+    ++ +++ A  IQ  N L    +SL  
Sbjct: 391 -------------FQPMNANFGILPLVQKV----KKSERKEAYGIQALNELAQFQQSLSW 433

Query: 484 TSK 486
            +K
Sbjct: 434 NTK 436


>gi|229031462|ref|ZP_04187462.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1271]
 gi|228729751|gb|EEL80731.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1271]
          Length = 434

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPSVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETIQ 429


>gi|229157408|ref|ZP_04285486.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 4342]
 gi|228626135|gb|EEK82884.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus ATCC 4342]
          Length = 434

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 168/479 (35%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +   A+ ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYAARALETI 428


>gi|228992560|ref|ZP_04152487.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus pseudomycoides DSM 12442]
 gi|228767194|gb|EEM15830.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus pseudomycoides DSM 12442]
          Length = 434

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRKMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEMTEIPEGPTVI-------------ATGPLTSPELSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKESIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEVFFEGCMPVEVM-------ASRGRQTLLFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P+ L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPRLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKHRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKQERNEAYATRALETIQ 429


>gi|332686607|ref|YP_004456381.1| tRNA m(5)U-54 MTase gid [Melissococcus plutonius ATCC 35311]
 gi|332370616|dbj|BAK21572.1| tRNA m(5)U-54 MTase gid [Melissococcus plutonius ATCC 35311]
          Length = 436

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 177/489 (36%), Gaps = 72/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G +  L           H+T     + C+ ++ G      
Sbjct: 5   VKVIGAGLAGSEAAWQIANNGVAVELYEMRPNKQTPAHQTDHFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+ + AD   +              G     DRE +   +  +I   
Sbjct: 65  VGVLKEEMRQLNSLIIKSADETAV------------PAGGALAVDRENFSRMVTEKIKKH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + EV     +  +I             +T  LTT      +      +      
Sbjct: 113 PLITIKKEEVTNIPNDNTVI-------------ATGPLTTECLSEEIKCFNDSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M+  +   R   G  A L+       + E Q   E LI      + + 
Sbjct: 160 AAAPIVDQSTINMEKVYLKSRYNKGEAAYLNCPM---TQEEFQAFYEALIAA----ETVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LKTFEKEKYFEGCMPIEVM-------AKRGIKTMLFGPMKPVGLEDP--KTGKRPFAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    IR G      +IN P+ L P
Sbjct: 264 LRQDNAAASLYNMVGFQTHLKWGEQKRVFQMIPGLENAEFIRYGVMHRNSFINSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +++K   LF AGQ+ G  GY E+AA GL+AGIN+AR +     + F R ++ +G M  
Sbjct: 324 TYQSQKRDNLFFAGQMTGVEGYVESAASGLLAGINAARLTKNNVPLIFPR-ETVLGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                 +   +P NA+  L P   +   I +++ +  A   +  + 
Sbjct: 383 YITHTE--------------KKHFQPMNANFGLLPELPER--IKDKKIRYEALATRALDI 426

Query: 474 LRSLLKSLV 482
            +  LK++ 
Sbjct: 427 EKDFLKTVT 435


>gi|228986975|ref|ZP_04147101.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772753|gb|EEM21193.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 434

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 168/479 (35%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +   A+ ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYAARALETI 428


>gi|311068134|ref|YP_003973057.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus atrophaeus 1942]
 gi|310868651|gb|ADP32126.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus atrophaeus 1942]
          Length = 435

 Score =  279 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 108/486 (22%), Positives = 176/486 (36%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTAAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  +   AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIAAADEC------------SVPAGGALAVDRHEFAASVTNRVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II             +T  LT+      +  +   +      
Sbjct: 114 PNVTVMNEEVTEIPAGPTII-------------ATGPLTSEALSSQLKELTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPILEKDSLDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALTTAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +E      G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHP--ETGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLEP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  S LF AGQ+ G  GY E+AA GLVAGIN+A+   + + + F + ++ IG M  
Sbjct: 325 TYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAAKLVLEQELVTFPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                + + +P NA+  L   + +++    ER ++   + I+   
Sbjct: 384 YITT--------------TNQKNFQPMNANFGLLKELPVRIKNKKERNEEYAKRAIETIQ 429

Query: 473 FLRSLL 478
            +   +
Sbjct: 430 TISKTI 435


>gi|228909657|ref|ZP_04073480.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 200]
 gi|228849946|gb|EEM94777.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 200]
          Length = 434

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 170/487 (34%), Gaps = 73/487 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI +   V VIG G AG EAA   AK G    L           H T     + C+ ++ 
Sbjct: 1   MITQV--VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLR 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G +  E+  +D ++ R AD                  G     DR  +   +
Sbjct: 59  ANTLTNAVGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +  N+ V+  E+        II             +T  LT+      +  +   
Sbjct: 107 TEYVKNHPNVTVVNEELTEIPEGPTII-------------ATGPLTSPDLAAQLKELTGE 153

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +  M   +   R   G  A L         TE++F  +R     
Sbjct: 154 DYFYFYDAAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEAL 206

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++       A        +GP     +ED   + G+
Sbjct: 207 IAAETVPLKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGK 257

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
                + L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN
Sbjct: 258 TPYAVVQLRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFIN 317

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L PT + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +
Sbjct: 318 SPNLLRPTYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPSVTA 377

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFA 465
             G M + +T              A    + +P NA+  L  P+  K+    ER +    
Sbjct: 378 M-GSMANYIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYAT 422

Query: 466 KYIQEYN 472
           + ++   
Sbjct: 423 RALETIQ 429


>gi|229197942|ref|ZP_04324657.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1293]
 gi|228585521|gb|EEK43624.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus m1293]
          Length = 434

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 168/479 (35%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +   A+ ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYAARALETI 428


>gi|258511364|ref|YP_003184798.1| gid protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478090|gb|ACV58409.1| gid protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 437

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 113/489 (23%), Positives = 169/489 (34%), Gaps = 71/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA  AA  GA   L           H T     + C  ++        
Sbjct: 4   VTVIGAGLAGSEAAWQAANRGAKVTLYEMRPVQMTPAHHTDRFAELVCTNSLRSNSITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R ADA  +              G     DR+ +   +   +   
Sbjct: 64  VGLLKEEMRRLDSVIMRAADAHAV------------PAGNALAVDRDGFSQRVTELVSQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V++ EV     +   +             +T  LT+      +  +          
Sbjct: 112 PNITVVREEVTEIPKDGVTVV------------ATGPLTSPALSEDIRRLVGHGDLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   F   R   G     D   I    TE++F  E         +   
Sbjct: 160 AAAPIVTKESIDMSKVFFQSRYDQG-----DAAYINCPMTEEEF--EAFYDALVHAECAE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E        E +      I+  A        +GP     + D   R G R    + 
Sbjct: 213 LKDFE-------EERYFEGCMPIEALAKRGKQTLLFGPMKPVGLRDP--RTGRRPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+   +R G      YIN P  L P
Sbjct: 264 LRQDNAAATLYNMVGFQTHLKWGEQKRVFRMIPGLEQAEFVRYGVMHRNTYINSPVALLP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +   D + F  T S  G +  
Sbjct: 324 TYQAKARPTLFFAGQMTGVEGYVESAASGLIAGINAARVAAGQDALVFPPTTSM-GSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                     +P NA   + P         + R +R+A   +    
Sbjct: 383 YITHASPQ--------------GFQPMNATFGIFPPLDPPVKDKKARYERYAA--RALED 426

Query: 474 LRSLLKSLV 482
           L++ ++ L 
Sbjct: 427 LQAFMRELE 435


>gi|34763616|ref|ZP_00144547.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886714|gb|EAA23856.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 238

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 111/233 (47%), Positives = 144/233 (61%), Gaps = 5/233 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D+IV+G GHAGCEAA  +A++G  TA+ T    TIG MSCNP++GG  K HL REID
Sbjct: 2   QEFDIIVVGAGHAGCEAALASARMGMKTAIFTISLDTIGVMSCNPSLGGPAKSHLAREID 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           AL G MGR  D   IQ RVLN +KGPAVR  R QAD+  Y   M++ +   ENL VIQG 
Sbjct: 62  ALGGEMGRNIDKTFIQIRVLNTRKGPAVRSLRAQADKMAYANEMKKTLEHTENLSVIQGM 121

Query: 124 VAGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           V+    E    K +I  I +++    R   V++ TGTFLRG+IHIG++   AGRMG+  S
Sbjct: 122 VSELIVEEENGKKVIKGIKIREGLEYRAKAVIVATGTFLRGLIHIGEINFSAGRMGELSS 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD-ERLIPFSFMTD 231
             L  S  K     GR KTGTP R+DG+TI +   E+Q  D  +++ FS  T 
Sbjct: 182 EDLPLSLEKIGLKLGRFKTGTPTRIDGRTIDYSVLEEQPGDKSQVLKFSNRTK 234


>gi|73662826|ref|YP_301607.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82592878|sp|Q49X36|TRMFO_STAS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|72495341|dbj|BAE18662.1| glucose-inhibited division protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 435

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 176/486 (36%), Gaps = 93/486 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGVKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRQLDSLIISAADKARV------------PAGGALAVDRHDFAGYVTETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II++  +  + +   + +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEINSIPEGYTIIATGPLTTDKL--ANEIVEATG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G               T   A ++ +    ++ EK+   E 
Sbjct: 165 IEKDSIDMNKVYLKSRYDKGEAAYLNCPMTEDEFNTFYDALMEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + GER    + L  +     +    G  T L    Q   IR IPGLE V I+R G    
Sbjct: 253 -KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKDVIRLIPGLENVEIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L  T E K    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLTETYELKGREELYFAGQMTGVEGYVESAASGLVAGINVAHKMLNKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L     K     + R 
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLTTLEKKVKDKKLRY 417

Query: 462 KRFAKY 467
           ++ A  
Sbjct: 418 EKLADR 423


>gi|15615029|ref|NP_243332.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus halodurans C-125]
 gi|26006776|sp|Q9KA24|TRMFO_BACHD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|10175086|dbj|BAB06185.1| glucose-inhibited division protein [Bacillus halodurans C-125]
          Length = 435

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/489 (21%), Positives = 178/489 (36%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   A+ G +  L           H T     + C+ ++ G      
Sbjct: 6   INVIGAGLAGSEAAWQIAERGIAVHLYEMRPVKQTPAHHTDKFAELVCSNSLRGNSLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++ R AD                  G     DR  +  A+   +   
Sbjct: 66  VGVLKEEMRRLNSVIIRSADRC------------SVPAGGALAVDRHEFAQAVTEAVREH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+        +I             +T  LT+      +  +   +      
Sbjct: 114 PNVTVFTEEIQKIPDGPTVI-------------ATGPLTSKALSEQLKQLTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIIETDSINMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALISAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEVFFEGCMPVEVM-------AKRGKKTLLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q + I+ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRRDNQSGTLYNIVGFQTHLKWGPQKEVIQLIPGLENAEIVRYGVMHRNTFINSPNLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + KK   LF AGQI G  GY E+AA GLVAG+N+AR     + + F  T + +G M +
Sbjct: 325 TYQYKKRKDLFFAGQITGVEGYVESAAAGLVAGLNAARLVQSKELVVFPDT-TMLGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-RQKRFAKYIQEYN 472
            +T+                  + +P NA+  L P  +      ++ R +  A   +   
Sbjct: 384 YITT--------------ANSKNFQPMNANFGLLP-PLDTRIKDKKTRYETLAG--RALE 426

Query: 473 FLRSLLKSL 481
            +++ +K +
Sbjct: 427 SIQNFVKKM 435


>gi|229098301|ref|ZP_04229248.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-29]
 gi|229117318|ref|ZP_04246696.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-3]
 gi|228666218|gb|EEL21682.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock1-3]
 gi|228685199|gb|EEL39130.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-29]
          Length = 434

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEELTEIPEGPTII-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETIQ 429


>gi|62719473|gb|AAX93337.1| glucose-inhibited division protein A GidA [Lactobacillus
           sanfranciscensis]
          Length = 226

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 139/226 (61%), Gaps = 4/226 (1%)

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
            N +  ++    ++    TVVL TGT  RG I+IG+L+  +G     PS  L  +  K  
Sbjct: 1   DNRVEGVITNTGAIYHAKTVVLATGTSARGQIYIGELRYSSGPNNSLPSIKLSENLEKNG 60

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK----ITNRQIECGITRTN 246
           F+  R KTGTP R++G TI     E+Q  DE+   FSFMT        + QI C +T TN
Sbjct: 61  FNLERFKTGTPPRVNGNTIDHSGIEEQPGDEKPHHFSFMTPYSDYLPVSEQISCWLTYTN 120

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH+II +N+  S +++G I   GPRYCPSIEDK+VRF +++ HQ+FLEPEG   D  Y
Sbjct: 121 PTTHQIIRDNLDRSPLFNGVIDGIGPRYCPSIEDKVVRFADKDRHQVFLEPEGRGNDEWY 180

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
            +G+S ++PEE+Q + + +I GLE   ++RPGYAIEYD I P+++ 
Sbjct: 181 VDGMSNSMPEELQQEMLHSIKGLENAKMMRPGYAIEYDIIPPQQMK 226


>gi|228998608|ref|ZP_04158195.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock3-17]
 gi|229006108|ref|ZP_04163796.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock1-4]
 gi|228755184|gb|EEM04541.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock1-4]
 gi|228761076|gb|EEM10035.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus mycoides Rock3-17]
          Length = 434

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRKMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEMTEIPEGPTVI-------------ATGPLTSPELSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKESIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEVFFEGCMPVEVM-------ASRGRQTLLFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P+ L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPRLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKHRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKQERNEAYATRALETIQ 429


>gi|218898985|ref|YP_002447396.1| gid protein [Bacillus cereus G9842]
 gi|228940920|ref|ZP_04103479.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228966777|ref|ZP_04127821.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228973849|ref|ZP_04134425.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980439|ref|ZP_04140749.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis Bt407]
 gi|226707904|sp|B7IUJ1|TRMFO_BACC2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|218544000|gb|ACK96394.1| gid protein [Bacillus cereus G9842]
 gi|228779259|gb|EEM27516.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis Bt407]
 gi|228785874|gb|EEM33877.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792876|gb|EEM40434.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818756|gb|EEM64822.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941601|gb|AEA17497.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 434

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEELTEIPEGPTII-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPSVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETIQ 429


>gi|42782924|ref|NP_980171.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus ATCC 10987]
 gi|217961252|ref|YP_002339820.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus AH187]
 gi|229140474|ref|ZP_04269029.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST26]
 gi|50400232|sp|Q732N8|TRMFO_BACC1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707906|sp|B7HLG5|TRMFO_BACC7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|42738851|gb|AAS42779.1| gid protein [Bacillus cereus ATCC 10987]
 gi|217064533|gb|ACJ78783.1| gid protein [Bacillus cereus AH187]
 gi|228643035|gb|EEK99311.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BDRD-ST26]
 gi|324327729|gb|ADY22989.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 434

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|282850255|ref|ZP_06259634.1| tRNA:M(5)U-54 methyltransferase [Veillonella parvula ATCC 17745]
 gi|282579748|gb|EFB85152.1| tRNA:M(5)U-54 methyltransferase [Veillonella parvula ATCC 17745]
          Length = 438

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 171/492 (34%), Gaps = 72/492 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNNKN--VIVIGAGLAGSEAAWQLANRGIHVDLYEMRPLKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSIIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +++ S  N+ V   EV    TE  +I             ++  LT+      +  +   
Sbjct: 107 TKKVKSHPNITVHHEEVTEIPTEGTVIF------------ASGPLTSEALGDNIKVLTGE 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P  +  +      F   R   G     D   +    TE+++  +      
Sbjct: 155 TGFYFYDAAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMTEEEY--KAFWNEL 207

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  +  E  I         I+       A    D   YGP     + DK  R  E
Sbjct: 208 TTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RTNE 258

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
            +   + L  E     +    G  T L    Q +    IPGLE    +R G      YIN
Sbjct: 259 ESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNTYIN 318

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+  AR   +   I F +T +
Sbjct: 319 SPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVARYLEEKPFIEFPKTTA 378

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFA 465
            IG +   +++                  + +P N +  +      K+    E+      
Sbjct: 379 -IGSLSHYISNYE--------------GSNFQPMNVNFGIMESWPQKVRKKKEKNALIAN 423

Query: 466 KYIQEYNFLRSL 477
           + ++E   L++ 
Sbjct: 424 RALEELEALKAK 435


>gi|255659256|ref|ZP_05404665.1| tRNA:M(5)U-54 methyltransferase [Mitsuokella multacida DSM 20544]
 gi|260848711|gb|EEX68718.1| tRNA:M(5)U-54 methyltransferase [Mitsuokella multacida DSM 20544]
          Length = 445

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 179/489 (36%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VI++G G AG EAA  AAK GA   L           HKT+    + C+ ++ G G    
Sbjct: 4   VIIVGAGLAGSEAAWQAAKQGAEVTLYEMRPAKSTPAHKTAGFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   ADA  +              G     DR  +   +  ++   
Sbjct: 64  VGVLKEEMRRLGSIIMEAADATRV------------PAGGALAVDRHGFSDYVTAKVTEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV     E++ ++ +          ++  LT G+    +             
Sbjct: 112 PNITVVHEEVPKIPMEEDAVTIV----------ASGPLTAGSLAEDIAARTGNDSLYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  SL +  M   +   R   G  A      I    T++++  E         +K  
Sbjct: 162 AAAPIVSLESVDMTKAYRASRYGKGEAAY-----INCPMTKEEY--EAFWNALVTAEKAP 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E            ++       A    D   YGP     +E  +   G R    + 
Sbjct: 215 TKDFEKEKFFEGCMPVEVM-------ASRGIDTLLYGPLKPVGLEHPV--TGVRPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGLE    +R G      ++N P+ + P
Sbjct: 266 LRQDNASATLYNIVGFQTHLKWPEQRRVFGMIPGLEHAEFLRYGVMHRNTFLNSPRHMRP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ +    L  AGQ+ G  GY E+A+ GLVAG+N+AR +     + F   +S  G +  
Sbjct: 326 TLQLRGEDRLLFAGQMTGVEGYIESASSGLVAGVNAARIARGEAPLVFPE-ESCHGALCH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRFAK 466
            +T           TS A++    +P N +  + P        G ++    +++Q    K
Sbjct: 385 YIT-----------TSEAKH---FQPMNVNFGILPPVETRDANGRRIRDKKQKKQLLAEK 430

Query: 467 YIQEYNFLR 475
            +      +
Sbjct: 431 ALAAIEAFK 439


>gi|118479054|ref|YP_896205.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis str.
           Al Hakam]
 gi|118418279|gb|ABK86698.1| glucose-inhibited division protein A [Bacillus thuringiensis str.
           Al Hakam]
          Length = 452

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 24  VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 83

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 84  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 131

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 132 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 178

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 179 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 231

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 232 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 282

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 283 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 342

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + I      +  G M +
Sbjct: 343 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPIVLPPVTAM-GSMAN 401

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 402 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 446


>gi|260892474|ref|YP_003238571.1| gid protein [Ammonifex degensii KC4]
 gi|260864615|gb|ACX51721.1| gid protein [Ammonifex degensii KC4]
          Length = 437

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/445 (22%), Positives = 165/445 (37%), Gaps = 49/445 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V+V+G G AG EAA   A+ G    L   +   +         G L   + +R     +A
Sbjct: 3   VVVVGAGLAGSEAAWQIARRGIRVILYEMRPHKMTPAHHTGYFGELVCSNSLRAESLENA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  +     + PA  G     DRE +   +   + S   +++ + EV
Sbjct: 63  VGLLKEEMRRLGSLVMQAAEANRVPA--GGSLAVDREGFAAYITEALSSHPLIEIRREEV 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    I             +T  LT+      +  +   +        +P  +L +
Sbjct: 121 TSIPDHFPTII------------ATGPLTSPALSAAIKELTGEEYLYFYDAVAPIVTLES 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F + R   G PA      I    T++++  +R        +++  ++ E  I  
Sbjct: 169 IDQEKVFWSSRYGKGEPAY-----INCPMTKEEY--DRFYEALVTAERVPLKEFEKEIHF 221

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++       A    +   YGP     + D   R G++    + L  +     +
Sbjct: 222 EGCMPIEVM-------AARGRETLLYGPLKPVGLIDP--RTGKQPYAVVQLRQDNREGTL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE+   +R G      ++N P  L PTL  KK  GL
Sbjct: 273 FNLVGFQTNLKWSEQKRVFRLIPGLERAEFVRYGVMHRNTFLNAPILLEPTLLCKKKPGL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+AA GLVAGIN+AR       + F    ++ G +++ +T+      
Sbjct: 333 FFAGQITGVEGYVESAAAGLVAGINAARLVRGEKPLVFPPETAH-GALLNYITTADPRH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP 448
                         +P N +  L P
Sbjct: 391 -------------FQPMNVNYGLFP 402


>gi|223044221|ref|ZP_03614258.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus capitis SK14]
 gi|222442371|gb|EEE48479.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus capitis SK14]
          Length = 435

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/498 (22%), Positives = 182/498 (36%), Gaps = 94/498 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAQRGVKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNITVLNEEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  +  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 VEKDTIDMNKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + GER    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E +    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELEGHDHLYFAGQMTGVEGYVESAASGLVAGINLAHKLAGKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERR 460
            R ++ IG M   +             S A+   + +P NA+  L P +  ++    ER 
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKRIKDKKERY 417

Query: 461 QKRFAKYIQEYNFLRSLL 478
           + +  + ++  +  +  L
Sbjct: 418 EAQANRALEYLDNYKQTL 435


>gi|65321159|ref|ZP_00394118.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Bacillus anthracis str. A2012]
          Length = 452

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 24  VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 83

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 84  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 131

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 132 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 178

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 179 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 231

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 232 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 282

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 283 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 342

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 343 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 401

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 402 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALEMI 446


>gi|229174498|ref|ZP_04302030.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus MM3]
 gi|228609058|gb|EEK66348.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus MM3]
          Length = 434

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKRKAERNEAYATRALETIQ 429


>gi|49478916|ref|YP_037893.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141656|ref|YP_085173.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus E33L]
 gi|170689656|ref|ZP_02880836.1| gid protein [Bacillus anthracis str. A0465]
 gi|196042357|ref|ZP_03109628.1| gid protein [Bacillus cereus NVH0597-99]
 gi|218904960|ref|YP_002452794.1| gid protein [Bacillus cereus AH820]
 gi|228916469|ref|ZP_04080035.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928880|ref|ZP_04091912.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947551|ref|ZP_04109841.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229092874|ref|ZP_04224008.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-42]
 gi|229123346|ref|ZP_04252550.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 95/8201]
 gi|229186072|ref|ZP_04313241.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BGSC 6E1]
 gi|254683461|ref|ZP_05147321.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739604|ref|ZP_05197298.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Kruger B]
 gi|301055322|ref|YP_003793533.1| glucose inhibited division protein A [Bacillus anthracis CI]
 gi|81170593|sp|Q6HEY3|TRMFO_BACHK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81686578|sp|Q636J4|TRMFO_BACCZ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707903|sp|B7JJB0|TRMFO_BACC0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49330472|gb|AAT61118.1| glucose inhibited division protein A [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51975125|gb|AAU16675.1| glucose inhibited division protein A [Bacillus cereus E33L]
 gi|170666380|gb|EDT17163.1| gid protein [Bacillus anthracis str. A0465]
 gi|196026813|gb|EDX65449.1| gid protein [Bacillus cereus NVH0597-99]
 gi|218539529|gb|ACK91927.1| gid protein [Bacillus cereus AH820]
 gi|228597248|gb|EEK54899.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus BGSC 6E1]
 gi|228660122|gb|EEL15758.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus 95/8201]
 gi|228690496|gb|EEL44279.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-42]
 gi|228812071|gb|EEM58402.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830687|gb|EEM76292.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843048|gb|EEM88130.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|300377491|gb|ADK06395.1| glucose inhibited division protein A [Bacillus cereus biovar
           anthracis str. CI]
          Length = 434

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|225865813|ref|YP_002751191.1| tRNA:m(5)U-54 methyltransferase [Bacillus cereus 03BB102]
 gi|228935146|ref|ZP_04097973.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|205830476|sp|A0RHK5|TRMFO_BACAH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789167|sp|C1EP56|TRMFO_BACC3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225789627|gb|ACO29844.1| tRNA:m(5)U-54 methyltransferase [Bacillus cereus 03BB102]
 gi|228824511|gb|EEM70316.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 434

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + I      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPIVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|282916511|ref|ZP_06324269.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770315|ref|ZP_06343207.1| methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus H19]
 gi|282318998|gb|EFB49350.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460462|gb|EFC07552.1| methylenetetrahydrofolate-tRNA-(uracil-5-)- methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus H19]
          Length = 435

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEIIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISRPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|56964042|ref|YP_175773.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus clausii KSM-K16]
 gi|81170595|sp|Q5WFP8|TRMFO_BACSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56910285|dbj|BAD64812.1| glucose inhibited division protein Gid [Bacillus clausii KSM-K16]
          Length = 436

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/495 (22%), Positives = 179/495 (36%), Gaps = 74/495 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +     + VIG G AG EAA   AK G    L           H T     + C+ ++ G
Sbjct: 1   MTHKQSINVIGAGLAGSEAAWQIAKRGGHVRLYEMRPVKQTPAHHTDKFAELVCSNSLRG 60

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + AD A +              G     DR  +   + 
Sbjct: 61  NSLANAVGVLKEEMRHLDSVIIKAADEAAV------------PAGGALAVDRHDFAGKVT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +    N+ V+Q EV        II             +T  LT+      +      +
Sbjct: 109 EYVKGHPNVTVVQEEVTEIPEGPAII-------------ATGPLTSEALAEQLKAFSGEE 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P            +   R   G  A L         TE++F  +R      
Sbjct: 156 YLYFYDAAAPIIDAETIDRDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYQALI 208

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             + +  R+ E  I         ++       A        +GP     +ED   + G+R
Sbjct: 209 EAETVPLREFEKDIFFEGCMPIEVM-------ASRGKKTMLFGPLKPVGLEDP--KTGKR 259

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +  +  +    G  T L    Q + IR IPGLE  +I+R G      ++N 
Sbjct: 260 PFAVVQLRQDNSSGTLYNMVGFQTHLKWGPQKEVIRMIPGLENADIVRYGVMHRNTFLNS 319

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L PT ++KK S LF AGQ+ G  GY E+AA GLVAGIN+ + +   +   F   ++ 
Sbjct: 320 PNLLKPTYQSKKRSDLFFAGQMTGVEGYVESAAAGLVAGINAFKWTQSQELAVFPE-ETM 378

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-GERRQKRFAK 466
           IG M   +T+                  + +P NA+  L P  + +     + R +  A 
Sbjct: 379 IGSMAAYITN--------------ANAKTFQPMNANFGLVP-PLNVRIKAKKERYEALA- 422

Query: 467 YIQEYNFLRSLLKSL 481
             +    +++ +K +
Sbjct: 423 -KRALESIQNFMKEV 436


>gi|228902335|ref|ZP_04066492.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 4222]
 gi|228857304|gb|EEN01807.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus thuringiensis IBL 4222]
          Length = 434

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEELTEIPEGPTII-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVQGEEPVVLPSVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|30263836|ref|NP_846213.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Ames]
 gi|47529260|ref|YP_020609.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186682|ref|YP_029934.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Sterne]
 gi|165873313|ref|ZP_02217918.1| gid protein [Bacillus anthracis str. A0488]
 gi|167642030|ref|ZP_02400260.1| gid protein [Bacillus anthracis str. A0193]
 gi|170709359|ref|ZP_02899773.1| gid protein [Bacillus anthracis str. A0389]
 gi|177655997|ref|ZP_02937124.1| gid protein [Bacillus anthracis str. A0174]
 gi|227813260|ref|YP_002813269.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229602681|ref|YP_002868070.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. A0248]
 gi|254735870|ref|ZP_05193576.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Western North America USA6153]
 gi|254751201|ref|ZP_05203240.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Vollum]
 gi|254759316|ref|ZP_05211341.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           Australia 94]
 gi|33301123|sp|Q81WK3|TRMFO_BACAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789165|sp|C3P5N4|TRMFO_BACAA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789166|sp|C3L795|TRMFO_BACAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|30258480|gb|AAP27699.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. Ames]
 gi|47504408|gb|AAT33084.1| gid protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180609|gb|AAT55985.1| gid protein [Bacillus anthracis str. Sterne]
 gi|164710951|gb|EDR16523.1| gid protein [Bacillus anthracis str. A0488]
 gi|167510010|gb|EDR85426.1| gid protein [Bacillus anthracis str. A0193]
 gi|170125733|gb|EDS94646.1| gid protein [Bacillus anthracis str. A0389]
 gi|172079896|gb|EDT65004.1| gid protein [Bacillus anthracis str. A0174]
 gi|227006782|gb|ACP16525.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. CDC 684]
 gi|229267089|gb|ACQ48726.1| tRNA:m(5)U-54 methyltransferase [Bacillus anthracis str. A0248]
          Length = 434

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALEMI 428


>gi|134299830|ref|YP_001113326.1| gid protein [Desulfotomaculum reducens MI-1]
 gi|189040805|sp|A4J5Z8|TRMFO_DESRM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|134052530|gb|ABO50501.1| gid protein [Desulfotomaculum reducens MI-1]
          Length = 441

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 172/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AG EAA   A+ G    L   +               L   + +R     +A
Sbjct: 6   VTVIGAGLAGSEAAWQLARRGIHVDLYEMRPQKYPPAHHTAYFSELVCSNSLRAAAIENA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  K PA  G     DRE +   +   +     +D+ + EV
Sbjct: 66  VGLLKEEMRQLDSLIISAADNHKVPA--GGALAVDREGFSRYITETLEDHPLIDIHREEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +  +I             ++  LT+ +    +  +   +        +P  +L +
Sbjct: 124 TKIPEKGIVIV------------ASGPLTSESLSHEIAKVTGEQYLYFYDAAAPIVTLES 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G  A L+           Q   E+        ++   ++ E  +  
Sbjct: 172 LDMTKVFRASRYGKGEEAYLNCPM-------DQDEYEKFYDALIHAERAPIKEFEKQVHF 224

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  +        A    D   YGP     + D   R G+R    + L  +     +
Sbjct: 225 EGCMPVEV-------LASRGKDTLLYGPLKPVGLTDP--RTGKRPHGVVQLRQDNAEGTL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE    +R G      YI +P  L PTL+ K+   +
Sbjct: 276 FNLVGFQTNLKWGEQKRVFSFIPGLEDAEFVRYGVMHRNTYITSPVLLQPTLQMKEHPRI 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+AA GL+AGIN+A  + + D + F +  ++ G ++  +T+      
Sbjct: 336 FFAGQITGVEGYVESAAAGLIAGINAAALAKQKDLLIFPKETAH-GALMHYITTAST--- 391

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P N    L P  + +   G+ R++  A+  +    L+  ++   +
Sbjct: 392 -----------KNFQPMNVTFGLFPE-LTVRLKGK-RERGRAQAERALEILKEWIEKEKI 438


>gi|148267741|ref|YP_001246684.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393799|ref|YP_001316474.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JH1]
 gi|189040809|sp|A6U169|TRMFO_STAA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|189040810|sp|A5ISD5|TRMFO_STAA9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147740810|gb|ABQ49108.1| gid protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149946251|gb|ABR52187.1| gid protein [Staphylococcus aureus subsp. aureus JH1]
          Length = 435

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 182/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L++  K+L
Sbjct: 417 YEAQAN--RALDYLKNFKKTL 435


>gi|222097277|ref|YP_002531334.1| tRNA (uracil-5-)-methyltransferase gid [Bacillus cereus Q1]
 gi|254789168|sp|B9IVC1|TRMFO_BACCQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221241335|gb|ACM14045.1| gid protein [Bacillus cereus Q1]
          Length = 434

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEITKIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|47570333|ref|ZP_00240978.1| gid protein [Bacillus cereus G9241]
 gi|47552998|gb|EAL11404.1| gid protein [Bacillus cereus G9241]
          Length = 434

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKRKAERNEAYATRALETIQ 429


>gi|229162768|ref|ZP_04290725.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus R309803]
 gi|228620650|gb|EEK77519.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus R309803]
          Length = 434

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKRKAERNEAYATRALETIQ 429


>gi|253733511|ref|ZP_04867676.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253728565|gb|EES97294.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 435

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/500 (22%), Positives = 185/500 (37%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITEVLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ +I  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITIINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P  ++   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETR-IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +  A+  +  ++L +  K+L
Sbjct: 416 RYEAQATRALDYLENFKKTL 435


>gi|298694543|gb|ADI97765.1| probable glucose inhibited division protein A [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 435

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRSVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|258423908|ref|ZP_05686793.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9635]
 gi|257845937|gb|EEV69966.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9635]
          Length = 435

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKAEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|261207607|ref|ZP_05922292.1| gid protein [Enterococcus faecium TC 6]
 gi|289565119|ref|ZP_06445572.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecium D344SRF]
 gi|260077990|gb|EEW65696.1| gid protein [Enterococcus faecium TC 6]
 gi|289163126|gb|EFD10973.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecium D344SRF]
          Length = 439

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLDSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 202

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 203 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 425 EAIKTELEKTAIPNE 439


>gi|15924241|ref|NP_371775.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926834|ref|NP_374367.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus N315]
 gi|21282863|ref|NP_645951.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486090|ref|YP_043311.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651820|ref|YP_186126.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus COL]
 gi|82750852|ref|YP_416593.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           RF122]
 gi|87161842|ref|YP_493841.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194959|ref|YP_499759.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221373|ref|YP_001332195.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156979572|ref|YP_001441831.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509417|ref|YP_001575076.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221142041|ref|ZP_03566534.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253315608|ref|ZP_04838821.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006038|ref|ZP_05144639.2| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795693|ref|ZP_05644672.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9781]
 gi|258415917|ref|ZP_05682187.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9763]
 gi|258421679|ref|ZP_05684603.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9719]
 gi|258434835|ref|ZP_05688909.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9299]
 gi|258444589|ref|ZP_05692918.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A8115]
 gi|258447578|ref|ZP_05695722.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6300]
 gi|258449420|ref|ZP_05697523.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6224]
 gi|258452550|ref|ZP_05700556.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5948]
 gi|258454799|ref|ZP_05702763.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5937]
 gi|262051313|ref|ZP_06023536.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|269202867|ref|YP_003282136.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892739|ref|ZP_06300974.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8117]
 gi|282920495|ref|ZP_06328216.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9765]
 gi|282927593|ref|ZP_06335209.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A10102]
 gi|284024244|ref|ZP_06378642.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 132]
 gi|294848246|ref|ZP_06788993.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9754]
 gi|295406187|ref|ZP_06815994.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8819]
 gi|296274809|ref|ZP_06857316.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208103|ref|ZP_06924534.1| FADH(2)-oxidizing protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244415|ref|ZP_06928298.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8796]
 gi|300912184|ref|ZP_07129627.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381185|ref|ZP_07363838.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54037184|sp|P64235|TRMFO_STAAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54037185|sp|P64236|TRMFO_STAAW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54041088|sp|P64234|TRMFO_STAAM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170600|sp|Q5HGI1|TRMFO_STAAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|81170602|sp|Q6G9W2|TRMFO_STAAS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|122539696|sp|Q2FZ31|TRMFO_STAA8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123486195|sp|Q2FHI7|TRMFO_STAA3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123549066|sp|Q2YXL7|TRMFO_STAAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989568|sp|A7X1M6|TRMFO_STAA1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|172048861|sp|A6QGF1|TRMFO_STAAE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|189040811|sp|A8Z3T1|TRMFO_STAAT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13701051|dbj|BAB42346.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247021|dbj|BAB57413.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204302|dbj|BAB94999.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244533|emb|CAG42962.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286006|gb|AAW38100.1| Gid protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656383|emb|CAI80802.1| probable glucose inhibited division protein A [Staphylococcus
           aureus RF122]
 gi|87127816|gb|ABD22330.1| glucose inhibited division protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202517|gb|ABD30327.1| gid protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374173|dbj|BAF67433.1| glucose inhibited division protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721707|dbj|BAF78124.1| glucose-inhibited division protein gid [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368226|gb|ABX29197.1| glucose-inhibited division protein Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257789665|gb|EEV28005.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9781]
 gi|257839253|gb|EEV63727.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9763]
 gi|257842365|gb|EEV66790.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9719]
 gi|257849196|gb|EEV73178.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A9299]
 gi|257850082|gb|EEV74035.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A8115]
 gi|257853769|gb|EEV76728.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6300]
 gi|257857408|gb|EEV80306.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A6224]
 gi|257859768|gb|EEV82610.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5948]
 gi|257863182|gb|EEV85946.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           A5937]
 gi|259160688|gb|EEW45709.1| glucose-inhibited division protein A [Staphylococcus aureus
           930918-3]
 gi|262075157|gb|ACY11130.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus ED98]
 gi|269940742|emb|CBI49124.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590596|gb|EFB95673.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A10102]
 gi|282594157|gb|EFB99144.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9765]
 gi|282764736|gb|EFC04861.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8117]
 gi|283470466|emb|CAQ49677.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ST398]
 gi|285816933|gb|ADC37420.1| tRNA:m(5)U-54 MTase gid [Staphylococcus aureus 04-02981]
 gi|294825046|gb|EFG41468.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A9754]
 gi|294968775|gb|EFG44797.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8819]
 gi|296887346|gb|EFH26248.1| FADH(2)-oxidizing protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178445|gb|EFH37691.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus A8796]
 gi|300886430|gb|EFK81632.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751074|gb|ADL65251.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340168|gb|EFM06109.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829645|emb|CBX34487.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131044|gb|EFT87028.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|315198491|gb|EFU28820.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140932|gb|EFW32779.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144352|gb|EFW36118.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323441029|gb|EGA98736.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus O11]
 gi|323443898|gb|EGB01509.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus O46]
 gi|329313921|gb|AEB88334.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727839|gb|EGG64290.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 435

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|218288286|ref|ZP_03492585.1| gid protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241645|gb|EED08818.1| gid protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 437

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/489 (23%), Positives = 170/489 (34%), Gaps = 71/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA  AA  GA   L           H T+    + C  ++        
Sbjct: 4   VTVIGAGLAGSEAAWQAANRGAKVTLYEMRPVQMTPAHHTARFAELVCTNSLRSNSITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R ADA  +              G     DR+ +   +   +   
Sbjct: 64  VGLLKEEMRRLDSVIMRAADAHAV------------PAGNALAVDRDGFSQRVTELVSQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V++ EV     E   +             +T  LT+      +  +          
Sbjct: 112 PNITVVREEVTEIPKEGVTVV------------ATGPLTSPALSEDIRRLVGHGDLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   F   R   G     D   I    TE++F  E         +   
Sbjct: 160 AAAPIVTKESIDMSKVFFQSRYDQG-----DAAYINCPMTEEEF--EAFYDALIHAECAE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E        E +      I+  A        +GP     + D   R G R    + 
Sbjct: 213 LKDFE-------EERYFEGCMPIEALAKRGKQTLLFGPMKPVGLRDP--RTGRRPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+   +R G      YIN P  L P
Sbjct: 264 LRQDNAAATLYNMVGFQTHLKWGEQKRVFRMIPGLEQAEFVRYGVMHRNTYINSPVALLP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +   D + F  T S  G +  
Sbjct: 324 TYQAKARPTLFFAGQMTGVEGYVESAASGLIAGINAARVAAGQDALVFPPTTSM-GSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                     +P NA   + P         + R +R+A   +    
Sbjct: 383 YITHASPH--------------GFQPMNATFGIFPPLDPPVKDKKARYERYAA--RALED 426

Query: 474 LRSLLKSLV 482
           L++ ++ L 
Sbjct: 427 LQAFMRELE 435


>gi|253731870|ref|ZP_04866035.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724280|gb|EES93009.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|302332857|gb|ADL23050.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|329733546|gb|EGG69874.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 435

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITEVLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|294617497|ref|ZP_06697128.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1679]
 gi|291596237|gb|EFF27499.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1679]
          Length = 441

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLDSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 322 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 381 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 426

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 427 EAIKTELEKTAIPNE 441


>gi|229104394|ref|ZP_04235063.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-28]
 gi|228679092|gb|EEL33300.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-28]
          Length = 434

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEELTEIPEGPTII-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +  S   +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLSPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETIQ 429


>gi|238019260|ref|ZP_04599686.1| hypothetical protein VEIDISOL_01124 [Veillonella dispar ATCC 17748]
 gi|237863959|gb|EEP65249.1| hypothetical protein VEIDISOL_01124 [Veillonella dispar ATCC 17748]
          Length = 438

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 172/494 (34%), Gaps = 76/494 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNNKN--VIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSIIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             ++    N+ V   EV     E  +I  S  +  +    +   +   TG +        
Sbjct: 107 TEKVKGHPNITVHHEEVTEIPAEGTVIFASGPLTSEALGDKIKELTGETGFYFYD----- 161

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  +  + S +    F    +D G          D   +    TE+++  +    
Sbjct: 162 ----AAAPIVTAESLNYDKVFAASRYDKG----------DADYLNCPMTEEEY--KAFWH 205

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                + +  +  E  I         I+       A    D   YGP     + DK  R 
Sbjct: 206 ELTTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RT 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E +   + L  E     +    G  T L    Q +    IPGLE    +R G      Y
Sbjct: 257 NEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNTY 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+   R  +    I F +T
Sbjct: 317 INSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLDDRSFIDFPKT 376

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKR 463
            + IG +   +++                  + +P N +  +  P   K+    E+    
Sbjct: 377 TA-IGSLSHYVSNYE--------------GSNFQPMNVNFGIMDPWPQKIRKKKEKNALI 421

Query: 464 FAKYIQEYNFLRSL 477
             + ++E + L++ 
Sbjct: 422 ANRALEELDALKAK 435


>gi|254721982|ref|ZP_05183771.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus anthracis str.
           A1055]
          Length = 434

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 167/479 (34%), Gaps = 71/479 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTII-------------ATGPLTSPDLSVQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            +T              A    + +P NA+  L  P+  K+    ER +    + ++  
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKKKAERNEAYATRALETI 428


>gi|257892285|ref|ZP_05671938.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,408]
 gi|257828664|gb|EEV55271.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,408]
          Length = 439

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKVFHEAL 202

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 203 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 425 EAIKTELEKTAIPNE 439


>gi|257425305|ref|ZP_05601730.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257433359|ref|ZP_05609717.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436201|ref|ZP_05612248.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282910823|ref|ZP_06318626.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914028|ref|ZP_06321815.1| Gid protein [Staphylococcus aureus subsp. aureus M899]
 gi|282918950|ref|ZP_06326685.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924073|ref|ZP_06331749.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501060|ref|ZP_06666911.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510022|ref|ZP_06668730.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526608|ref|ZP_06671293.1| Gid protein [Staphylococcus aureus subsp. aureus M1015]
 gi|257271762|gb|EEV03900.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257281452|gb|EEV11589.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284483|gb|EEV14603.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314045|gb|EFB44437.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316760|gb|EFB47134.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322096|gb|EFB52420.1| Gid protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325428|gb|EFB55737.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|290920680|gb|EFD97743.1| Gid protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096065|gb|EFE26326.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466966|gb|EFF09484.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|312438370|gb|ADQ77441.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 435

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEAAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|229019027|ref|ZP_04175868.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1273]
 gi|229025273|ref|ZP_04181693.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1272]
 gi|228736026|gb|EEL86601.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1272]
 gi|228742267|gb|EEL92426.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus AH1273]
          Length = 434

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVRLYEMRPVRQTPAHHTDRFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRLMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPDLAAQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKQRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPSVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFAPLEKKIKRKQERNEAYATRALETIQ 429


>gi|257884854|ref|ZP_05664507.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,501]
 gi|257820692|gb|EEV47840.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,501]
          Length = 439

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSKTITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 202

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 203 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 425 EAIKTELEKTAVPNE 439


>gi|229086385|ref|ZP_04218561.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-44]
 gi|228696901|gb|EEL49710.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Bacillus cereus Rock3-44]
          Length = 434

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAYQIAKRGVQVKLYEMRPVRQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRKMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVMNEEMTEIPEGPTVI-------------ATGPLTSPELSVQLKELTGEDYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKESIDMNKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFYDALIAAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEVFFEGCMPVEVM-------ASRGRQTLLFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN PK L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPKLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKHRDDLFFAGQMTGVEGYVESAASGLLAGINAARLVKGEEPVVLPPVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              A    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------ATNAKNFQPMNANFGLFVPLETKIKKKQERNEAYATRALETIQ 429


>gi|69246760|ref|ZP_00604108.1| Gid protein [Enterococcus faecium DO]
 gi|257878023|ref|ZP_05657676.1| glucose inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257881191|ref|ZP_05660844.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|257889778|ref|ZP_05669431.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|260559073|ref|ZP_05831259.1| gid protein [Enterococcus faecium C68]
 gi|68195114|gb|EAN09574.1| Gid protein [Enterococcus faecium DO]
 gi|257812251|gb|EEV41009.1| glucose inhibited division protein A [Enterococcus faecium
           1,230,933]
 gi|257816849|gb|EEV44177.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,502]
 gi|257826138|gb|EEV52764.1| glucose inhibited division protein A [Enterococcus faecium
           1,231,410]
 gi|260074830|gb|EEW63146.1| gid protein [Enterococcus faecium C68]
          Length = 439

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 202

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 203 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 425 EAIKTELEKTAIPNE 439


>gi|293563425|ref|ZP_06677874.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1162]
 gi|293568162|ref|ZP_06679498.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1071]
 gi|294622306|ref|ZP_06701349.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium U0317]
 gi|291589152|gb|EFF20964.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1071]
 gi|291598198|gb|EFF29296.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium U0317]
 gi|291604686|gb|EFF34171.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1162]
          Length = 441

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 322 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 381 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 426

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 427 EAIKTELEKTAIPNE 441


>gi|308180664|ref|YP_003924792.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046155|gb|ADN98698.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 441

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 174/483 (36%), Gaps = 52/483 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EAA   A +G +  L   + S +           L   + +R     +A
Sbjct: 7   VNVIGAGLAGSEAAWHIANMGVNVRLYEMRPSKMTPAHHTAQFAELVCTNSLRANQLANA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     I  +       PA  G     DR+ +   +   I +  N+++I  E+
Sbjct: 67  AGLLKAEMRQMDSIVMQAAEHHAVPA--GGALAVDRDTFSAEITAAITALPNVEIINEEI 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   ++             +T  LT  +  + +               +P  +  +
Sbjct: 125 TSLPDGITVV-------------ATGPLTAASLAKSIQAFNDEDDLHFFDAAAPILTKDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   G  A L+      +             F    D + + ++      
Sbjct: 172 IDMDKVYLKSRYDRGEAAYLNCPMTEAE-------------FDVFYDALIHAEMAEAHDF 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            N +        I+  A        +GP     +ED   + G++    + L  +    D+
Sbjct: 219 ENSDVFE-GCMPIEVMAQRGRQTMLFGPLKPVGLEDP--KTGKQPFAVVQLRQDDAAGDL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   L
Sbjct: 276 YNIVGFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDL 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T       
Sbjct: 336 FFAGQMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYITHTSAS-- 392

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P NA+  + P   +   I ++R++  A   +    L +     + 
Sbjct: 393 ------------NFQPMNANFGIMPKLKQR--IRDKRERNTAISERALADLTTFKDETLT 438

Query: 484 TSK 486
            + 
Sbjct: 439 VNN 441


>gi|258616487|ref|ZP_05714257.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecium DO]
 gi|314938035|ref|ZP_07845345.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a04]
 gi|314941979|ref|ZP_07848840.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133C]
 gi|314948768|ref|ZP_07852140.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0082]
 gi|314951786|ref|ZP_07854825.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133A]
 gi|314991807|ref|ZP_07857265.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133B]
 gi|314995848|ref|ZP_07860935.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a01]
 gi|313589952|gb|EFR68797.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a01]
 gi|313593618|gb|EFR72463.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133B]
 gi|313596065|gb|EFR74910.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133A]
 gi|313599231|gb|EFR78076.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133C]
 gi|313642610|gb|EFS07190.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0133a04]
 gi|313644834|gb|EFS09414.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium TX0082]
          Length = 458

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 21  VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 80

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 81  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 128

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 129 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 179

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 180 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 221

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 222 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 278

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 279 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 338

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 339 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 397

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 398 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 443

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 444 EAIKTELEKTAIPNE 458


>gi|293556767|ref|ZP_06675330.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1039]
 gi|291601099|gb|EFF31388.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E1039]
          Length = 441

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 182/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 322 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 381 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 426

Query: 472 NFLRSLLKSLVLTSK 486
             +++ L+   + ++
Sbjct: 427 EAIKTELEKTAVPNE 441


>gi|229918619|ref|YP_002887265.1| tRNA (uracil-5-)-methyltransferase Gid [Exiguobacterium sp. AT1b]
 gi|259547948|sp|C4L614|TRMFO_EXISA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|229470048|gb|ACQ71820.1| gid protein [Exiguobacterium sp. AT1b]
          Length = 436

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/495 (22%), Positives = 174/495 (35%), Gaps = 73/495 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+ +   V VIG G AG EAA   AK G    L           H T     + C+ ++ 
Sbjct: 1   MLQQR--VTVIGAGLAGSEAAWQLAKRGIQVDLYEMRPVRQTPAHHTDQFAELVCSNSLR 58

Query: 52  GLG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
             G     G L  E+  LD L+ + AD A                G     DR  +   +
Sbjct: 59  ANGLQNAVGVLKEEMRTLDSLILKAADTA------------SVPAGGALAVDRHEFAGFI 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             ++ + EN+ V   E+        I+             +T  LT+      +      
Sbjct: 107 TEKLKNHENVTVHNEELKEIPEGIVIV-------------ATGPLTSPDLSASLKAFTGE 153

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P            +   R   G  A L+       + E     E LI   
Sbjct: 154 DYLYFYDAAAPILDGDTIDRDKVYLKSRYDKGEAAYLNCPM---TEEEFDVFYEELIKA- 209

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              + +  ++ E  I         ++ E              +GP     +ED   + G+
Sbjct: 210 ---EVVPLKEFEKEIYFEGCMPFEVMAE-------RGKKTLLFGPMKPVGLEDP--KTGK 257

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q + IR IPGLE  +I+R G      +IN
Sbjct: 258 RPYAVVQLRQDNSAGTLYNLVGFQTHLKWGEQKRIIRLIPGLENADIVRYGVMHRNTFIN 317

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L PT + +    LF AGQ+ G  GY E+AA GL+AGIN+A+     + +   R ++
Sbjct: 318 SPSLLKPTYQARTRDTLFFAGQMTGVEGYVESAASGLLAGINAAKMIAGEELVVLPR-ET 376

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G M   +T+                    +P NA+  L P  ++      ++Q+R+ +
Sbjct: 377 MLGSMAHYITTAD--------------GKHFQPMNANFGLVP-SLEDAPKKMKKQERYER 421

Query: 467 YIQEYNFLRSLLKSL 481
           Y           K L
Sbjct: 422 YANRALETIQQYKDL 436


>gi|152976198|ref|YP_001375715.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189040802|sp|A7GRG2|TRMFO_BACCN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|152024950|gb|ABS22720.1| gid protein [Bacillus cytotoxicus NVH 391-98]
          Length = 434

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VKVIGAGLAGSEAAYQIAKRGIQVHLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  +D ++ R AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRRMDSVIIRAADEC------------SVPAGGALAVDRHEFAAKVTEYVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +   +      
Sbjct: 114 PNVTVMNEEITEIPEGPTVI-------------ATGPLTSPALAAQLKELTGEEYFYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     + LI      + + 
Sbjct: 161 AAAPIIEKDSIDMNKVYLKSRYDKGEAAYLNCPM---TEDEFNRFYDALIAA----ETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+     + 
Sbjct: 214 LKEFEKEIFFEGCMPVEVM-------AARGRQTLLFGPMKPVGLEDP--KTGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN PK L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPKLLRP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR     + +      +  G M +
Sbjct: 325 TYQYKHRDDLFFAGQMTGVEGYVESAASGLLAGINAARLLKGEEPVVLPSVTAM-GSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +    + +P NA+  L  P+  K+    ER +    + ++   
Sbjct: 384 YIT--------------STNAKNFQPMNANFGLFAPLEKKIKKKQERNEAYATRALETIQ 429


>gi|28378507|ref|NP_785399.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           WCFS1]
 gi|33516858|sp|Q88W23|TRMFO_LACPL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|28271343|emb|CAD64248.1| glucose inhibited division protein GidC [Lactobacillus plantarum
           WCFS1]
          Length = 441

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 99/483 (20%), Positives = 174/483 (36%), Gaps = 52/483 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EAA   A +G +  L   + + +           L   + +R     +A
Sbjct: 7   VNVIGAGLAGSEAAWHIANMGVNVRLYEMRPNKMTPAHHTAQFAELVCTNSLRANQLANA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     I  +       PA  G     DR+ +   +   I +  N+++I  E+
Sbjct: 67  AGLLKAEMRQMDSIVMQAAEHHAVPA--GGALAVDRDTFSAEITAAITALPNVEIINEEI 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   ++             +T  LT  +  + +               +P  +  +
Sbjct: 125 TSLPDGITVV-------------ATGPLTAASLAKSIQAFNDEDDLHFFDAAAPILTKDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   G  A L+      +             F    D + + ++      
Sbjct: 172 IDMDKVYLKSRYDRGEAAYLNCPMTEAE-------------FDVFYDALIHAEMAEAHDF 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            N +        I+  A        +GP     +ED   + G++    + L  +    D+
Sbjct: 219 ENSDVFE-GCMPIEVMAQRGRQTMLFGPLKPVGLEDP--KTGKQPFAVVQLRQDDAAGDL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   L
Sbjct: 276 YNIVGFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDL 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T       
Sbjct: 336 FFAGQMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYITHTSAS-- 392

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P NA+  + P   +   I ++R++  A   +    L +     + 
Sbjct: 393 ------------NFQPMNANFGIMPKLKQR--IRDKRERNTAISERALADLTTFKDETLT 438

Query: 484 TSK 486
            + 
Sbjct: 439 VNN 441


>gi|314933430|ref|ZP_07840795.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus caprae C87]
 gi|313653580|gb|EFS17337.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus caprae C87]
          Length = 435

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/498 (22%), Positives = 183/498 (36%), Gaps = 94/498 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G +  LI          H T     + C+ ++ G      
Sbjct: 5   VNVIGAGLAGSEAAYQLAQRGLNVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNVTVLNKEVNHIPEGYTIIATGPLTT--EHLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  +  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 VEKDTIDMNKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + GER    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGERPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E +    L+ AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELEGHEHLYFAGQMTGVEGYVESAASGLVAGINLAHKLAGKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERR 460
            R ++ IG M   +             S A+   + +P NA+  L P +  ++    ER 
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKRIKDKKERY 417

Query: 461 QKRFAKYIQEYNFLRSLL 478
           + +  + ++  +  +  L
Sbjct: 418 EAQANRALEYLDNYKQTL 435


>gi|300767453|ref|ZP_07077365.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495272|gb|EFK30428.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 450

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 174/483 (36%), Gaps = 52/483 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EAA   A +G +  L   + S +           L   + +R     +A
Sbjct: 16  VNVIGAGLAGSEAAWHIANMGVNVRLYEMRPSKMTPAHHTAQFAELVCTNSLRANQLANA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     I  +       PA  G     DR+ +   +   I +  N+++I  E+
Sbjct: 76  AGLLKAEMRQMDSIVMQAAEHHAVPA--GGALAVDRDTFSAEITAAITALPNVEIINEEI 133

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   ++             +T  LT  +  + +               +P  +  +
Sbjct: 134 TSLPDGITVV-------------ATGPLTAASLAKSIQAFNDEDDLHFFDAAAPILTKDS 180

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   G  A L+      +             F    D + + ++      
Sbjct: 181 IDMDKVYLKSRYDRGEAAYLNCPMTEAE-------------FDVFYDALIHAEMAEAHDF 227

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            N +        I+  A        +GP     +ED   + G++    + L  +    D+
Sbjct: 228 ENSDVFE-GCMPIEVMAQRGRQTMLFGPLKPVGLEDP--KTGKQPFAVVQLRQDDAAGDL 284

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   L
Sbjct: 285 YNIVGFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDL 344

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T       
Sbjct: 345 FFAGQMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYITHTSAS-- 401

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P NA+  + P   +   I ++R++  A   +    L +     + 
Sbjct: 402 ------------NFQPMNANFGIMPKLKQR--IRDKRERNTAISERALADLTTFKDETLT 447

Query: 484 TSK 486
            + 
Sbjct: 448 VNN 450


>gi|197119083|ref|YP_002139510.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter bemidjiensis Bem]
 gi|259547951|sp|B5EHR5|TRMFO_GEOBB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|197088443|gb|ACH39714.1| tRNA (5-methyl-U54)-methylenetransferase/reductase [Geobacter
           bemidjiensis Bem]
          Length = 435

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 105/480 (21%), Positives = 168/480 (35%), Gaps = 52/480 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---D 63
           ++ VIGGG AGCEAA  AAK G    L   K +        P +  L   + +R     +
Sbjct: 4   EITVIGGGLAGCEAAWQAAKRGVKVRLFEMKPNCYSEAHHLPGLSELVCSNSLRGDSLEN 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +        K PA  G     DR+L+   +   I S   ++V++ E
Sbjct: 64  AVGLLKEELRRLQSLFMEGAEATKVPA--GGALAVDRDLFSQYITSRIESHPLIEVVREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E  ++             ++  LT+G  L   I              +P  +  
Sbjct: 122 VTRIPEEGIVVL------------ASGPLTSG-LLAEEIGRLAGSYLYFYDAIAPIVAAD 168

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +      F   R   G         +     E+Q+  +  +      +K+  +  E  + 
Sbjct: 169 SIDYDKAFRASRYGKGDGD----DYLNCPMDEEQY--QAFVREIVAAEKVEPKSFEKVVH 222

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                            A    +   +GP     + D   R G      I L  E     
Sbjct: 223 FEGCMPIE-------EMASRGPETLRFGPMKPVGLVDP--RVGVEPHAVIQLRQENREAT 273

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  R IPGLE    +R G      +IN P+ L  T + K    
Sbjct: 274 MYNLVGFQTKLTWPEQKRIFRMIPGLENAQFLRLGSMHRNTFINAPELLMATCQLKSDQR 333

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +F AGQI G  GY E+A+ G VAG+N+AR +   + +     ++ IG +   +T+     
Sbjct: 334 IFFAGQITGVEGYVESASSGFVAGVNAARLAQG-EGLVVPPAETAIGALARHITNTEAGH 392

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                          +P N +  L P    L    ++++KR     +    L   L  L 
Sbjct: 393 --------------FQPMNVNYGLFP---SLPGRVKKKEKRGLLAQRGLETLEKWLPELS 435


>gi|254556721|ref|YP_003063138.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           JDM1]
 gi|254045648|gb|ACT62441.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus plantarum
           JDM1]
          Length = 441

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 174/483 (36%), Gaps = 52/483 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EAA   A +G +  L   + S +           L   + +R     +A
Sbjct: 7   VNVIGAGLAGSEAAWHIANMGVNVRLYEMRPSKMTPAHHTAQFAELVCTNSLRANQLANA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     I  +       PA  G     DR+ +   +   I +  N+++I  E+
Sbjct: 67  AGLLKAEMRQMDSIVMQAAEHHAVPA--GGALAVDRDTFSAEITAAITALPNVEIINEEI 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   ++             +T  LT  +  + +               +P  +  +
Sbjct: 125 TSLPDGITVV-------------ATGPLTAASLAKSIQAFNDEDDLHFFDAAAPILTKDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   G  A L+      +             F    D + + ++      
Sbjct: 172 IDMDKVYLKSRYDRGEAAYLNCPMTEAE-------------FDVFYDALIHAEMAEAHEF 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            N +        I+  A        +GP     +ED   + G++    + L  +    D+
Sbjct: 219 ENSDVFE-GCMPIEVMAQRGRQTMLFGPLKPVGLEDP--KTGKQPFAVVQLRQDDAAGDL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE V  +R G      ++ +PK L PT +T++   L
Sbjct: 276 YNIVGFQTHLKWGEQKRVFSLIPGLENVEFVRYGVMHRNTFMKSPKLLTPTYQTQQRPDL 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA G+VAG N+AR +  L+ + F  TD+ +G M   +T       
Sbjct: 336 FFAGQMTGVEGYIESAASGIVAGTNAARLALGLEPVVFP-TDTMMGAMAHYITHTSAS-- 392

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P NA+  + P   +   I ++R++  A   +    L +     + 
Sbjct: 393 ------------NFQPMNANFGIMPKLKQR--IRDKRERNTAISERALADLTTFKDETLT 438

Query: 484 TSK 486
            + 
Sbjct: 439 VNN 441


>gi|293570277|ref|ZP_06681346.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E980]
 gi|291609684|gb|EFF38945.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium E980]
          Length = 441

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 181/495 (36%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 322 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 381 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 426

Query: 472 NFLRSLLKSLVLTSK 486
             ++  L+   + ++
Sbjct: 427 ETIKKELEKTAVPNE 441


>gi|330685680|gb|EGG97321.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus epidermidis VCU121]
          Length = 435

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 111/500 (22%), Positives = 183/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIQAADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNVTVLNQEVHSIPEGYTIIATGPLTT--ENLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFDRFYNAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      ++ AGQ+ G  GY E+AA GLV+GIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELIGHENIYFAGQMTGVEGYVESAASGLVSGINLAHKLLDKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +   +  +   +L +  K+L
Sbjct: 416 RYETQANRALEYLENYKKTL 435


>gi|205373362|ref|ZP_03226166.1| tRNA (uracil-5-)-methyltransferase Gid [Bacillus coahuilensis m4-4]
          Length = 433

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 174/489 (35%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G S  L           H T     + C+ ++        
Sbjct: 4   VNVIGAGLAGSEAAWQLASRGVSVNLYEMRPKKQTPAHHTDKFAELVCSNSLRANTLTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR  +   +   +   
Sbjct: 64  VGVLKEEMRKLNSVIISSADDCAV------------PAGGALAVDRHEFAAKVTERVKHH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V + EV        II             +T  LT+      +  +   +      
Sbjct: 112 PNVTVYEEEVKDIPEGITII-------------ATGPLTSEALSEKLRTVTGEEYLYFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F   R        + + 
Sbjct: 159 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--NRFYEALIAAETVP 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 212 LKEFEKEIFFEGCMPIEVM-------ASRGKKTMLFGPLKPVGLEDP--KTGKRPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   IIR G      +IN PK L  
Sbjct: 263 LRQDDAAGTLYNLVGFQTHLKWGPQKEVLQLIPGLENAEIIRYGVMHRNTFINSPKILKS 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    L  AGQ+ G  GY E+AA GLVAGIN+A+ +   + + F    + IG M +
Sbjct: 323 TYQHKDRPTLLFAGQMTGVEGYVESAASGLVAGINAAKLALGEEPVVFPE-QTAIGSMAN 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                  + +P NA+  L P +  K+    ER ++   +      
Sbjct: 382 YITT--------------TNAKNFQPMNANFGLFPALDKKIKNKQERNEQHATR---ALE 424

Query: 473 FLRSLLKSL 481
            +++ +KSL
Sbjct: 425 TIQNFMKSL 433


>gi|239636271|ref|ZP_04677273.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus warneri L37603]
 gi|239597626|gb|EEQ80121.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus warneri L37603]
          Length = 435

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 178/491 (36%), Gaps = 77/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A+ G    LI          H T     + C+ ++ G      
Sbjct: 5   VNVVGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIKAADKARV------------PAGGALAVDRHDFAGYITDTLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  EV        II             +T  LTT    + ++ I          
Sbjct: 113 PNVTVLNQEVHNIPEGYTII-------------ATGPLTTENLAQEIVDITGKDQLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F            D+  
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF------------DRFY 202

Query: 235 NRQIECGITRTNLETHRIIMENIKH---SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           N  +E  +   N        E        A        +GP     +ED   + G+R   
Sbjct: 203 NAVLEAEVAPVNEFEKEKYFEGCMPFEVMAARGRKTLLFGPMKPVGLEDP--KTGKRPFA 260

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q + I+ IPGLE V+I+R G      +IN P  
Sbjct: 261 VVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDV 320

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L    E      ++ AGQ+ G  GY E+AA GLV+GIN A K      + F R ++ IG 
Sbjct: 321 LNEKYELIGHENIYFAGQMTGVEGYVESAASGLVSGINLAHKLLDKGEVIFPR-ETMIGS 379

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           M   +             S A+   + +P NA+  L P   K   I +++++   +  + 
Sbjct: 380 MAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKERYETQANRA 424

Query: 471 YNFLRSLLKSL 481
             +L +  K+L
Sbjct: 425 LEYLENYKKTL 435


>gi|319789192|ref|YP_004150825.1| gid protein [Thermovibrio ammonificans HB-1]
 gi|317113694|gb|ADU96184.1| gid protein [Thermovibrio ammonificans HB-1]
          Length = 438

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/496 (23%), Positives = 186/496 (37%), Gaps = 73/496 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + +   + VIGGG AG E A  AA  G+   L           H+T  +  + C+  +GG
Sbjct: 1   MEKEKVINVIGGGLAGVETAWRAANEGSKVRLFEMRPEKTTPAHRTDKLAELVCSNTLGG 60

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                 +G L  E++ L+ L+   A    +              G     DRE +   + 
Sbjct: 61  KEITTPRGLLKAEMELLNSLVVEAAKKTAV------------PAGGALAVDREKFADYIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            +I +  N++VI+ EV     E   +             +T  LT+ TF R +      +
Sbjct: 109 EKIETHPNIEVIRQEVTQLPEEGITVV------------ATGPLTSDTFSRFLREYLGEE 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP            F   R   G    L+       K E +     L+    
Sbjct: 157 ELHFYDAISPIVYADTIDYTKCFWGSRYGKGGDDYLNCPM---TKEEYEKFYNALMEA-- 211

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +K+  ++ E             + E          +   +GP     + D   R G++
Sbjct: 212 --EKVPLKEFEKACYFEGCMPIEEMAE-------RGKETLLFGPLKPVGLIDP--RTGKQ 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  E     ++   G  T L    Q +  R IPGLE     R G      +IN 
Sbjct: 261 PHAVVQLRKENREGTLLNLVGFQTKLKYPEQKRVFRLIPGLENAEFARYGSIHRNTFINS 320

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           PK L PTL+ KK   +  AGQI G  GY E+AA G+VAG+N++R +N  + +   R ++ 
Sbjct: 321 PKLLLPTLQLKKNPKVLFAGQITGVEGYPESAATGIVAGLNASRIANNKEPVVPPR-ETM 379

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE-RRQKRFAK 466
           IG ++  +T     +P R            +P NA+  L P   +    G+  R+K  A 
Sbjct: 380 IGGLLRYIT---EADPKR-----------FQPMNANFGLLPPP-ERRIKGKLERRKYLAN 424

Query: 467 YIQEYNFLRSLLKSLV 482
             +    +R  LK L 
Sbjct: 425 --RALEVMRRWLKELS 438


>gi|257898820|ref|ZP_05678473.1| glucose inhibited division protein A [Enterococcus faecium Com15]
 gi|257836732|gb|EEV61806.1| glucose inhibited division protein A [Enterococcus faecium Com15]
          Length = 439

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 177/495 (35%), Gaps = 73/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++F            +  
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF--RAFHEALINAEVA 208

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E            ++       A        +GP     +ED   + G+R    I
Sbjct: 209 ELKSFEKEKYFEGCMPIEVM-------AQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKSLVLTSK 486
             ++  L+   + ++
Sbjct: 425 ETIKKELEKTAVPNE 439


>gi|49483414|ref|YP_040638.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282903806|ref|ZP_06311694.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905569|ref|ZP_06313424.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908544|ref|ZP_06316374.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283957994|ref|ZP_06375445.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427738|ref|ZP_06820370.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591304|ref|ZP_06949942.1| (FADH(2)-oxidizing) [Staphylococcus aureus subsp. aureus MN8]
 gi|81170601|sp|Q6GHI4|TRMFO_STAAR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49241543|emb|CAG40229.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327606|gb|EFB57889.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330861|gb|EFB60375.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595424|gb|EFC00388.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790143|gb|EFC28960.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128096|gb|EFG57730.1| tRNA:m(5)U-54 methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576190|gb|EFH94906.1| (FADH(2)-oxidizing) [Staphylococcus aureus subsp. aureus MN8]
          Length = 435

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/501 (22%), Positives = 181/501 (36%), Gaps = 97/501 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   ++ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLSERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    +  EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEAAPVNSFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGKGEVVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG-ERR 460
            R ++ IG M   +             S A+   + +P NA+  L P  ++      + R
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIKDKKER 416

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
            +  A   +  ++L +  K+L
Sbjct: 417 YEAQAN--RALDYLENFKKTL 435


>gi|269798028|ref|YP_003311928.1| gid protein [Veillonella parvula DSM 2008]
 gi|269094657|gb|ACZ24648.1| gid protein [Veillonella parvula DSM 2008]
          Length = 438

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 173/494 (35%), Gaps = 76/494 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M +++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNHKN--VIVIGAGLAGSEAAWQLANRGIYVDLYEMRPVKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSIIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
            +++ S  N+ V   EV     E  +I  S  +       +   +   TG +        
Sbjct: 107 TKKVKSHPNITVHHEEVTEIPIEGTVIFASGPLTSVALGDKIKALTGETGFYFYD----- 161

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  +  + S +    F    +D G          D   +    TE+++  +    
Sbjct: 162 ----AAAPIVTAESLNYDKVFAASRYDKG----------DADYLNCPMTEEEY--KAFWH 205

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                + +  +  E  I         I+       A    D   YGP     + DK  R 
Sbjct: 206 ELTTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RT 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      Y
Sbjct: 257 NEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNTY 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +T
Sbjct: 317 INSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPKT 376

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKR 463
            + IG +   +++                  + +P N +  +      K+    E+    
Sbjct: 377 TA-IGSLSHYISNYE--------------GSNFQPMNVNFGIMESWPQKVRKKKEKNALI 421

Query: 464 FAKYIQEYNFLRSL 477
             + ++E + L++ 
Sbjct: 422 ANRALEELDALKAK 435


>gi|313892679|ref|ZP_07826262.1| tRNA:m(5)U-54 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442770|gb|EFR61179.1| tRNA:m(5)U-54 methyltransferase [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 438

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/494 (21%), Positives = 173/494 (35%), Gaps = 76/494 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNNKN--VIVIGAGLAGSEAAWQLANRGIHVDLYEMRPLKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  L+   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSLIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
            +++    N+ V   EV     E  +I  S  +  +    +   +   TG +        
Sbjct: 107 TKKVKGHPNITVHNEEVTEIPAEGTVIFASGPLTSEALGDKIKALTGETGFYFYD----- 161

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  +  + S +    F    +D G          D   +    TE+++  +    
Sbjct: 162 ----AAAPIVTAESLNYDKVFAASRYDKG----------DADYLNCPMTEEEY--KVFWQ 205

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                + +  +  E  I         I+       A    D   YGP     + DK  R 
Sbjct: 206 ELTTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RT 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E +   + L  E     +    G  T L    Q +    IPGLE    IR G      Y
Sbjct: 257 NEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENAEFIRYGVMHRNTY 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +T
Sbjct: 317 INSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVERYLEERSFIDFPKT 376

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKR 463
            + IG +   +++                  + +P N +  +  P   K+    E+    
Sbjct: 377 TA-IGSLSHYISNYE--------------GSNFQPMNVNFGIMDPWPQKVRKKKEKNALI 421

Query: 464 FAKYIQEYNFLRSL 477
             + ++E + L++ 
Sbjct: 422 ANRALEELDVLKAK 435


>gi|320527483|ref|ZP_08028664.1| tRNA:M(5)U-54 methyltransferase [Solobacterium moorei F0204]
 gi|320132196|gb|EFW24745.1| tRNA:M(5)U-54 methyltransferase [Solobacterium moorei F0204]
          Length = 431

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/475 (21%), Positives = 168/475 (35%), Gaps = 52/475 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---D 63
           DV VIG G AGCEAA   AK G    L   K         +     L   + +R     +
Sbjct: 2   DVSVIGAGLAGCEAAYQLAKRGFHVRLYEMKPVKHSPAHHSDDFAELVCSNSLRSDALTN 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  ++ +  K PA  G     DRE +   +   I +  N++VI  E
Sbjct: 62  AVGVLKEEMRQIGSLIMQIADNNKVPA--GSALAVDREKFAKVVTETIRNHPNIEVIAEE 119

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V        II++  +    M++        GT              A  +  + S    
Sbjct: 120 VTKIPEGPTIIATGPLSSEGMMKA------IGTLSDDRYCYFYD--AAAPIVTAESIDFS 171

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++ K  +D G          +   I    T ++F        +F  + I     E    
Sbjct: 172 KAYKKSRYDKG----------EADYINCPMTREEFD-------AFYMELIKAETAEVHAF 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
               E         +  A    D   +GP     +E +  +   R    + L  +     
Sbjct: 215 --EKEVFFEGCMPFEVMAKRGRDTLLFGPMKPVGLEQEGKK---RPYAVVQLRQDNAQAS 269

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISG 362
           +    G  T L    Q + I+ IPGLE   I+R G      YI +P  L  T + K    
Sbjct: 270 LYNIVGFQTHLKWGEQKRIIQMIPGLENAEIVRYGVMHRNTYICSPIYLRETYQFKDRDD 329

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+ G  GY E+AA G++AGIN AR     + +     ++ +G M   +T      
Sbjct: 330 LFFAGQMTGVEGYVESAASGMLAGINMARVLKGEEPVVLGV-NTMMGAMAHYITHADPNH 388

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                          +P NA+  +  +  ++    +R+     + ++    L+  
Sbjct: 389 --------------FQPMNANFGIMHLEGEVK-KKDRKAAYAPQALKIIQELKEK 428


>gi|294791908|ref|ZP_06757056.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 6_1_27]
 gi|294457138|gb|EFG25500.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 6_1_27]
          Length = 438

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/494 (21%), Positives = 175/494 (35%), Gaps = 76/494 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNNKN--VIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSIIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
            +++    N+ V   EV    TE  +I  S  +  +    +   +   TG +        
Sbjct: 107 TKKVKGHPNITVHLEEVTELPTEATVIFASGPLTSEALGDKIKALTGETGFYFYD----- 161

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  +  + S +    F    +D G          D   +    TE+++  +    
Sbjct: 162 ----AAAPIVTAESLNYDKVFAASRYDKG----------DADYLNCPMTEEEY--KAFWH 205

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                + +  +  E  I         I+       A    D   YGP     + DK  R 
Sbjct: 206 ELTTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RT 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      Y
Sbjct: 257 DEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNTY 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +T
Sbjct: 317 INSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPKT 376

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKR 463
            + IG +   +++                  + +P N +  +  P   K+    E+    
Sbjct: 377 TA-IGSLSHYISNYE--------------GSNFQPMNVNFGIMDPWPQKVRKKKEKNALI 421

Query: 464 FAKYIQEYNFLRSL 477
             + ++E + L++ 
Sbjct: 422 ANRALEELDALKAK 435


>gi|312792640|ref|YP_004025563.1| gid protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179780|gb|ADQ39950.1| gid protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 436

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 174/484 (35%), Gaps = 70/484 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA   AK G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANAIAKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A                 G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEAT------------SVEAGQALAVDRYKFSEYITQKIRQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV     +K ++              T  LTT + L  +  + + K     
Sbjct: 110 NELIEVIHEEVTEVPRDKVVVVC------------TGPLTTESLLSDISKLCESKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  E+        + I
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--EKFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   +GP     I D   R G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTMRFGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+    + +    +   IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQVLGKEPVSLPSSTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  +
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEIAKIKDKEKRKLLIAQKSLD 425

Query: 473 FLRS 476
             + 
Sbjct: 426 ICKQ 429


>gi|294500947|ref|YP_003564647.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium QM B1551]
 gi|294350884|gb|ADE71213.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium QM B1551]
          Length = 434

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   INVIGAGLAGSEAAWQIAKRGLKVRLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R AD   +              G     DR  +   +   + + 
Sbjct: 66  VGVLKEEMRLLDSVIIRSADECAV------------PAGGALAVDRHEFAARVTESVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEITEIPQGPTVI-------------ATGPLTSKDLSEKLRALTSEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       K E Q    R        + + 
Sbjct: 161 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---TKEEFQ----RFHEALINAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIYFEGCMPIEVM-------ASRGEKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + +  IPGLE   ++R G      +IN PK L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGAQKEVLSLIPGLENAEVVRYGVMHRNTFINSPKLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + ++   LF AGQ+ G  GY E+AA GL+AG+N+AR     + +   + ++ IG M  
Sbjct: 325 TYQYRERDDLFFAGQMTGVEGYVESAASGLMAGMNAARLVLGEELVVLPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T                   + +P NA+  L   + +++    ER +    + ++   
Sbjct: 384 YITHTSA--------------KNFQPMNANFGLFKELEVRIKNKQERNETLAKRALETIQ 429


>gi|126654063|ref|ZP_01725889.1| glucose-inhibited division protein A [Bacillus sp. B14905]
 gi|126589443|gb|EAZ83590.1| glucose-inhibited division protein A [Bacillus sp. B14905]
          Length = 437

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 173/490 (35%), Gaps = 72/490 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++   G    
Sbjct: 6   VNVIGAGLAGSEAAWQIAKRGVKVRLYEMRPVKQTPAHHTDKFAELVCSNSLRANGLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+   D ++ + AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRIFDSVILKAADQC------------SVPAGGALAVDRHEFAGYVTEAVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI GEV        +I++  +   S      +   TG      +        A  +
Sbjct: 114 PLVEVIHGEVTEIPEGITVIATGPLT--SKALAEKIQGLTG------LDYLYFYDAAAPI 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+          K+  D R        + + 
Sbjct: 166 IEKDSIDMDKVYLK-----SRYDKGEAAYLNCP------MTKEEFD-RFRQALIEAEVVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIYFEGCMPIEVM-------AARGEKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEK 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + ++   +F AGQ+ G  GY E+A  GL+AGIN+AR +   + I F   ++ +G M  
Sbjct: 325 TYQLREQKNIFFAGQMTGVEGYVESAGSGLIAGINAARLALGHEPIIFPF-ETALGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                   + +P N +  + P           R +  A   +  + 
Sbjct: 384 YITEAQS--------------KNFQPMNVNFGIFPELPPGRRSKPERAEMHA--TRAIST 427

Query: 474 LRSLLKSLVL 483
           + + + S  +
Sbjct: 428 IHNFVNSQTI 437


>gi|294793768|ref|ZP_06758905.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 3_1_44]
 gi|294455338|gb|EFG23710.1| tRNA:M(5)U-54 methyltransferase [Veillonella sp. 3_1_44]
          Length = 438

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/494 (21%), Positives = 175/494 (35%), Gaps = 76/494 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M +++  VIVIG G AG EAA   A  G    L           H+T     + C+ ++ 
Sbjct: 1   MNHKN--VIVIGAGLAGSEAAWQLANRGIHVDLYEMRPVKSSPAHQTDQFAELVCSNSLR 58

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   ADA  +              G     DR L+   +
Sbjct: 59  AGNIENAVGLLKEEMRRLGSIIMECADATAV------------PAGGALAVDRHLFSEMV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
            +++    N+ V   EV    TE  +I  S  +  +    +   +   TG +        
Sbjct: 107 TKKVKGHPNITVHLEEVTELPTEATVIFASGPLTSEALGDKIKALTGETGFYFYD----- 161

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  +  + S +    F    +D G          D   +    TE+++  +    
Sbjct: 162 ----AAAPIVTAESLNYDKVFAASRYDKG----------DADYLNCPMTEEEY--KAFWH 205

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                + +  +  E  I         I+       A    D   YGP     + DK  R 
Sbjct: 206 ELTTAEAVQPKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RT 256

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            E +   + L  E     +    G  T L    Q +    IPGLE  + IR G      Y
Sbjct: 257 DEESYAVVQLRKENKEGTMFNLVGFQTHLKWGEQKRVFGMIPGLENADFIRYGVMHRNTY 316

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           IN P+ L    + KK   LF AGQ+ G  GY E+AA GL+ G+   R   +   I F +T
Sbjct: 317 INSPELLNHAFQLKKEPRLFFAGQMTGVEGYLESAASGLMVGLQVDRYLEEQPFIEFPKT 376

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKR 463
            + IG +   +++                  + +P N +  +  P   K+    E+    
Sbjct: 377 TA-IGSLSHYISNYE--------------GSNFQPMNVNFGIMDPWPQKVRKKKEKNALI 421

Query: 464 FAKYIQEYNFLRSL 477
             + ++E + L++ 
Sbjct: 422 ANRALEELDALKAK 435


>gi|315172223|gb|EFU16240.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1346]
          Length = 435

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/486 (21%), Positives = 168/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--NAFHEALVNAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 264 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R  + +G M  
Sbjct: 324 TYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRETT-LGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++    ER +    + +    
Sbjct: 383 YITHAE--------------GKHFQPMNANFGLFPELPERIRDKKERYEAIANRALDVQA 428

Query: 473 FLRSLL 478
            L   L
Sbjct: 429 QLIQSL 434


>gi|322420081|ref|YP_004199304.1| gid protein [Geobacter sp. M18]
 gi|320126468|gb|ADW14028.1| gid protein [Geobacter sp. M18]
          Length = 436

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/475 (21%), Positives = 163/475 (34%), Gaps = 52/475 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           + VIGGG AGCEAA  AAK G    L   K          P +  L   + +R     +A
Sbjct: 5   ITVIGGGLAGCEAAWQAAKRGVKVRLYEMKPKRYSEAHHLPGLSELVCSNSLRGDSLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +        K PA  G     DREL+   + + I    N++V+  E+
Sbjct: 65  VGLLKEELRRLNSLFLEGAEATKVPA--GGALAVDRELFSEYITKRIEEHPNIEVLHEEI 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  ++             ++  LT+G      I              +P  S  +
Sbjct: 123 TRIPEEGIVVV------------ASGPLTSGALAE-EIGRLAGSYLYFYDAIAPIVSADS 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G         +     E+Q+     +      +K+  +  E  +  
Sbjct: 170 IDYSKAFRASRYGKGDGD----DYLNCPMDEEQYH--NFVKELLAAEKVEPKSFEKVVHF 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A    +   +GP     + D   R G      I L  E     +
Sbjct: 224 EGCMPVE-------EMASRGVETLRFGPMKPVGLVDP--RVGVEPYAVIQLRQENREATM 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE+   +R G      +IN P+ L  T + K    +
Sbjct: 275 YNLVGFQTKLTWPEQKRIFRMIPGLEEAQFLRLGSMHRNTFINAPQLLLATCQLKSDPRI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+A+ G VAG+N+AR +   + +     ++ IG +   +T+      
Sbjct: 335 LFAGQITGVEGYVESASSGFVAGVNAARLAKGAE-LIVPPAETAIGALARHITNTEA--- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                         +P N +  L P    L    ++++KR     +    L   L
Sbjct: 391 -----------ACFQPMNVNYGLFP---PLAGRIKKKEKRGLLAQRGLEALEKWL 431


>gi|313623982|gb|EFR94081.1| tRNA:M(5)U-54 methyltransferase [Listeria innocua FSL J1-023]
          Length = 434

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIESAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTIHTEEVTSIPEGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNTFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A      + I F   +S IG + +
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVQDKEPIVFPP-ESAIGSLAN 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELPAKIRAKQERNEKLAERALDAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 KVAEQL 434


>gi|125972982|ref|YP_001036892.1| gid protein [Clostridium thermocellum ATCC 27405]
 gi|256004779|ref|ZP_05429754.1| gid protein [Clostridium thermocellum DSM 2360]
 gi|171769985|sp|A3DCM0|TRMFO_CLOTH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|125713207|gb|ABN51699.1| gid protein [Clostridium thermocellum ATCC 27405]
 gi|255991229|gb|EEU01336.1| gid protein [Clostridium thermocellum DSM 2360]
 gi|316940782|gb|ADU74816.1| gid protein [Clostridium thermocellum DSM 1313]
          Length = 436

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 162/471 (34%), Gaps = 50/471 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           + VIG G AGCEAA   AK G    L   K               L   + +R     +A
Sbjct: 5   INVIGAGLAGCEAAWQIAKRGIKVKLFEMKPKKFSPAHHMETFAELVCSNSLRSNQLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +  + PA  G     DR  +   +   I   EN++VI  EV
Sbjct: 65  VGLLKEEMRLLNSIIMKCADAAQVPA--GGALAVDRTKFSQMVTELIKQNENIEVINEEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I             +T  LT+G   + +               +P  +  +
Sbjct: 123 RELPKEGITIV------------ATGPLTSGDLSKHLADFVGEGYLHFFDAAAPIVTFES 170

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   GT   ++      +K E +     L+       K  +R        
Sbjct: 171 IDMNKAFKAARYGRGTDDYINCPM---NKEEYEIFWNELVNAELAEVKDFDR-------- 219

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E        ++  A    D   +GP     + D     G+     + L  +     +
Sbjct: 220 ---EVVFEGCMPVETMAKRGKDTLRFGPLKPVGLVDP--NTGKEPYAVVQLRQDNSEGTM 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE    +R G      +IN P  L  T   KK   +
Sbjct: 275 YNMVGFQTRLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTFINSPVLLDATYCLKKSPNI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQI G  GY E+A+ G+VAGIN+A      D + F ++ + IG +   ++   +   
Sbjct: 335 YFAGQITGVEGYVESASSGMVAGINAAMDFLGKDRVVFPKSTA-IGALSHYVSDSSI--- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNF 473
                       + +P N +  +     +K+    +R  +   + ++    
Sbjct: 391 -----------KNFQPMNVNFGIMESFPLKIRDKRKRNYETAMRALKILKE 430


>gi|260886590|ref|ZP_05897853.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330839576|ref|YP_004414156.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Selenomonas sputigena ATCC 35185]
 gi|260863733|gb|EEX78233.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329747340|gb|AEC00697.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Selenomonas sputigena ATCC 35185]
          Length = 437

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/476 (22%), Positives = 171/476 (35%), Gaps = 68/476 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GA   L           HKT+    + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAAESGAQVTLYEMRPADSSPAHKTADFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA  +              G     DRE +   +  ++ + 
Sbjct: 64  VGVLKEEMRRLGSLVMAAADATRV------------PAGGALAVDREGFSRFITEKLTAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++  V     E++ ++ +          ++  LT G     +  +          
Sbjct: 112 PRVEVVRMRVETIPREEDAVTIV----------ASGPLTDGALAACLREMMGDASFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +L +  M   +   R   G PA      I    TE+++            +   
Sbjct: 162 AAAPIVTLESIDMTKAYRASRYGKGEPAY-----INCPMTEEEY--RAFWQALTTAETAE 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E  +         ++       A        +GP     +ED   + G R    + 
Sbjct: 215 LHSFEKPVFFEGCMPVEVM-------ASRGESTLLFGPLKPVGLEDP--KTGVRPHAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE    +R G      YI+ P+ L P
Sbjct: 266 LRQDNATGTLYNIVGFQTHLKWGEQRRVFCMIPGLENAEFMRYGVMHRNTYIDSPRLLAP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + KK + L  AGQ+ G  GY E+AA GLVAGIN+AR +       F R   + G +  
Sbjct: 326 TYQLKKEAELLFAGQMTGVEGYVESAASGLVAGINAARLAKGQRPFVFPRETCH-GALAA 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            +T                     +P N +  L P  ++     ++R+K       
Sbjct: 385 YITEADSRH--------------FQPMNVNFGLLP-PLEGRIRDKKRKKEMLAERA 425


>gi|327535214|gb|AEA94048.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis OG1RF]
          Length = 435

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 168/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--NAFHEALVNAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 264 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R  + +G M  
Sbjct: 324 TYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRETT-LGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++    ER +    + +    
Sbjct: 383 YITHAE--------------GKHFQPMNANFGLFPDLPERIRDKKERYEAIANRALDVQA 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 QVIQSL 434


>gi|222151084|ref|YP_002560238.1| glucose-inhibited division protein gid [Macrococcus caseolyticus
           JCSC5402]
 gi|222120207|dbj|BAH17542.1| glucose-inhibited division protein gid [Macrococcus caseolyticus
           JCSC5402]
          Length = 433

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/481 (22%), Positives = 165/481 (34%), Gaps = 94/481 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V +IG G AG EAA   AK G    L           H T     + C+ ++ G      
Sbjct: 4   VNIIGAGLAGSEAAYQLAKRGIKVKLYEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A                G     DR  +   +   +   
Sbjct: 64  VGVLKEEMRRLDSLIIKAADNA------------SVPAGGALAVDRHEFSGYVTDTLKQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++VI  E+        II++  +          +   TG               A  +
Sbjct: 112 ANIEVINEEITEIPDGPTIIATGPLTT--ESLSKQIQALTGQ------DHLYFYDAAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G               T   A L+ + +   + EK+   E 
Sbjct: 164 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNTFYDALLEAEVVPLKEFEKEIYFEG 223

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M                               A        +GP     +ED  
Sbjct: 224 CMPFEEM-------------------------------AKRGRKTLLFGPMKPVGLEDP- 251

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + ++ IPGLE V ++R G    
Sbjct: 252 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEILKLIPGLENVEVVRYGVMHR 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L  T + K    LFLAGQ+ G  GY E+AA GLVAGIN A K  +   +  
Sbjct: 311 NTFINSPTNLQQTYQFKGNDSLFLAGQMTGVEGYVESAASGLVAGINMA-KYVEDKPVIT 369

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
              ++ IG M   +T                   + +P NA+  L P   K     + R 
Sbjct: 370 FPENTVIGSMAYYITH--------------TNSKNFQPMNANFGLLPSLDKRIKDKKERY 415

Query: 462 K 462
           +
Sbjct: 416 E 416


>gi|317121808|ref|YP_004101811.1| gid protein [Thermaerobacter marianensis DSM 12885]
 gi|315591788|gb|ADU51084.1| gid protein [Thermaerobacter marianensis DSM 12885]
          Length = 508

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/455 (23%), Positives = 159/455 (34%), Gaps = 68/455 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V VIGGG AG EAA   A+ G    L           H T  +  + C+ ++ G      
Sbjct: 5   VTVIGGGLAGSEAAWQVARRGVPVRLYEMRPVKSTPAHHTGNLAELVCSNSLRGAQLDQA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA+ I              G     DRE +   +   I + 
Sbjct: 65  PGLLKEEMRRLGSLIMEAADASAI------------PAGSALAVDREEFSRRVTEAIENH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ EV     E  +I             +T  LT+      +      +  A   
Sbjct: 113 PLIEVVREEVTEPPAEGPVII------------ATGPLTSDALSAWIRAFTGEEYLAFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  +   F   R   G+        +    T +++  E         +K  
Sbjct: 161 AAAPIVTYESLDLSKLFRASRYGKGSGD----DYLNSPMTREEY--EAFWKALVEAEKHV 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E G+                  A    D   YGP     + D   R G      + 
Sbjct: 215 PHDFEQGLFFEGCLPIE-------EMARRGPDTLRYGPLKPVGLVDP--RTGREPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T+L    Q +  R IPGLE     R G      +I +PK L P
Sbjct: 266 LRRDNRYGTLYNLVGFQTSLKWGEQKRVFRMIPGLENAEFARYGVMHRNTFICSPKILHP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T++T+K   LF AGQI G  GY E+AA G+VAGIN+AR     + + F    ++ G +  
Sbjct: 326 TMQTRKRPDLFFAGQITGVEGYIESAATGIVAGINAARLVRGEEPVAFPPETAH-GALTR 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
            +T                     +P N    L P
Sbjct: 385 YITEAHPDH--------------FQPMNIAFGLLP 405


>gi|323489571|ref|ZP_08094798.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Planococcus donghaensis MPA1U2]
 gi|323396702|gb|EGA89521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Planococcus donghaensis MPA1U2]
          Length = 436

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 180/480 (37%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G +  L           H T     + C+ ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIAKRGVNVRLFEMRPVQQTAAHHTDKFAELVCSNSLRANSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD A                G     DR  +  A+  ++ + 
Sbjct: 65  VGVIKEEMRKLDSVIIESADGA------------SVPAGGALAVDRHEFAAAVTDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV        II++  +   ++     +   TG               A  +
Sbjct: 113 PLVEVINEEVTEIPEGITIIATGPLTSPAL--AEKIRKLTGE------EYLYFYDAAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K  +D G          +   +    TE++F  +R        + + 
Sbjct: 165 VEKDSIDMDKVYLKSRYDKG----------EAAYLNCPMTEEEF--KRFHTALVEAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A       ++GP     +ED   + GER    + 
Sbjct: 213 LKEFEKEIYFEGCMPVEVM-------AARGEKTLTFGPMKPVGLEDP--KTGERPYAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P+ L P
Sbjct: 264 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLKLIPGLENVEIVRYGVMHRNTFINSPRVLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    +F AGQ+ G  GY E+A  GL+AGIN+A+ +   D + F   ++ +G M  
Sbjct: 324 TYQLKADDNIFFAGQMTGVEGYVESAGSGLLAGINAAKLALGEDLLVFPA-ETALGSMAR 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                   + +P N +  L P +G ++    ER ++   + ++   
Sbjct: 383 YITEADS--------------KNFQPMNVNFGLFPDLGERIRSKQERAERHANRALESIQ 428


>gi|298370288|ref|ZP_06981604.1| glucose-inhibited division protein A [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281748|gb|EFI23237.1| glucose-inhibited division protein A [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 286

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 5/239 (2%)

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNA 442
              G N+ +     + +   R  +Y+GV++DDL +KGV EPYRMFTSRAEYR+ LR DNA
Sbjct: 43  WPTGANAVQYIRGQNPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNA 102

Query: 443 DNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDG 499
           D RLT  G K+G + E + + F +  +        LK+   T + L+      +  ++  
Sbjct: 103 DMRLTEDGHKIGLVSEEQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLS 162

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDAR--KFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
           +    ++ L  P+     L ++         S+ VIE+++I+  Y  Y  RQ  E    +
Sbjct: 163 REANLHDLLRRPNLDYAALMTLEGARPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSRR 222

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
             E   +P D DYS +  LS E+++KL+  KP  + QAS+I G+TPAA+ LL++++K+ 
Sbjct: 223 DIETLKLPDDIDYSKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRG 281


>gi|314936588|ref|ZP_07843935.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655207|gb|EFS18952.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis subsp.
           hominis C80]
          Length = 435

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 183/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIAAADKARV------------PAGGALAVDRHDFAGYITDTLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNVTVLNKEIHSIPEGHTIIATGPLTT--EHLAKEIVEITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M                               A        +GP     +ED  
Sbjct: 225 CMPFEVM-------------------------------AGRGRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELINNDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLGKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   +   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLDRR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +  A+  +  ++L +  K+L
Sbjct: 416 RYEAQAYRALDYLENFKKTL 435


>gi|29376203|ref|NP_815357.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis V583]
 gi|227518834|ref|ZP_03948883.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX0104]
 gi|229545741|ref|ZP_04434466.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX1322]
 gi|229549930|ref|ZP_04438655.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis ATCC
           29200]
 gi|255972713|ref|ZP_05423299.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T1]
 gi|255975765|ref|ZP_05426351.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T2]
 gi|256619144|ref|ZP_05475990.1| glucose inhibited division protein A [Enterococcus faecalis ATCC
           4200]
 gi|256762580|ref|ZP_05503160.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T3]
 gi|256853206|ref|ZP_05558576.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis T8]
 gi|256959060|ref|ZP_05563231.1| glucose inhibited division protein A [Enterococcus faecalis DS5]
 gi|256961847|ref|ZP_05566018.1| gid protein [Enterococcus faecalis Merz96]
 gi|256965044|ref|ZP_05569215.1| gid protein [Enterococcus faecalis HIP11704]
 gi|257079091|ref|ZP_05573452.1| gid protein [Enterococcus faecalis JH1]
 gi|257085102|ref|ZP_05579463.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis Fly1]
 gi|257086663|ref|ZP_05581024.1| gid protein [Enterococcus faecalis D6]
 gi|257089965|ref|ZP_05584326.1| tRNA (uracil-5-)-methyltransferase gid [Enterococcus faecalis
           CH188]
 gi|257416174|ref|ZP_05593168.1| glucose inhibited division protein A [Enterococcus faecalis
           AR01/DG]
 gi|257419376|ref|ZP_05596370.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|257422530|ref|ZP_05599520.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|293382912|ref|ZP_06628830.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis R712]
 gi|293389599|ref|ZP_06634056.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis S613]
 gi|294781638|ref|ZP_06746974.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis PC1.1]
 gi|300860563|ref|ZP_07106650.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|307270937|ref|ZP_07552220.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4248]
 gi|307273142|ref|ZP_07554388.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0855]
 gi|307274877|ref|ZP_07556040.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2134]
 gi|307277984|ref|ZP_07559068.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0860]
 gi|307289188|ref|ZP_07569144.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0109]
 gi|307291915|ref|ZP_07571784.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0411]
 gi|312899496|ref|ZP_07758826.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0470]
 gi|312903389|ref|ZP_07762569.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0635]
 gi|312907618|ref|ZP_07766609.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 512]
 gi|312910235|ref|ZP_07769082.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 516]
 gi|312951579|ref|ZP_07770475.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0102]
 gi|33301126|sp|Q834K1|TRMFO_ENTFA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|29343666|gb|AAO81427.1| glucose-inhibited division protein [Enterococcus faecalis V583]
 gi|227073747|gb|EEI11710.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX0104]
 gi|229304943|gb|EEN70939.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis ATCC
           29200]
 gi|229309191|gb|EEN75178.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           TX1322]
 gi|255963731|gb|EET96207.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T1]
 gi|255968637|gb|EET99259.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T2]
 gi|256598671|gb|EEU17847.1| glucose inhibited division protein A [Enterococcus faecalis ATCC
           4200]
 gi|256683831|gb|EEU23526.1| tRNA(uracil-5-)-methyl transferase Gid [Enterococcus faecalis T3]
 gi|256711665|gb|EEU26703.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis T8]
 gi|256949556|gb|EEU66188.1| glucose inhibited division protein A [Enterococcus faecalis DS5]
 gi|256952343|gb|EEU68975.1| gid protein [Enterococcus faecalis Merz96]
 gi|256955540|gb|EEU72172.1| gid protein [Enterococcus faecalis HIP11704]
 gi|256987121|gb|EEU74423.1| gid protein [Enterococcus faecalis JH1]
 gi|256993132|gb|EEU80434.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis Fly1]
 gi|256994693|gb|EEU81995.1| gid protein [Enterococcus faecalis D6]
 gi|256998777|gb|EEU85297.1| tRNA (uracil-5-)-methyltransferase gid [Enterococcus faecalis
           CH188]
 gi|257158002|gb|EEU87962.1| glucose inhibited division protein A [Enterococcus faecalis
           ARO1/DG]
 gi|257161204|gb|EEU91164.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|257164354|gb|EEU94314.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Enterococcus faecalis X98]
 gi|291079577|gb|EFE16941.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis R712]
 gi|291081216|gb|EFE18179.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis S613]
 gi|294451334|gb|EFG19800.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis PC1.1]
 gi|300849602|gb|EFK77352.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TUSoD Ef11]
 gi|306496913|gb|EFM66461.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0411]
 gi|306499897|gb|EFM69258.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0109]
 gi|306505381|gb|EFM74567.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0860]
 gi|306508325|gb|EFM77432.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2134]
 gi|306510127|gb|EFM79151.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0855]
 gi|306512435|gb|EFM81084.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4248]
 gi|310626646|gb|EFQ09929.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 512]
 gi|310630545|gb|EFQ13828.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0102]
 gi|310633265|gb|EFQ16548.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0635]
 gi|311289508|gb|EFQ68064.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis DAPTO 516]
 gi|311293366|gb|EFQ71922.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0470]
 gi|315027185|gb|EFT39117.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2137]
 gi|315029302|gb|EFT41234.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4000]
 gi|315034052|gb|EFT45984.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0017]
 gi|315147345|gb|EFT91361.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX4244]
 gi|315150455|gb|EFT94471.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0012]
 gi|315152399|gb|EFT96415.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0031]
 gi|315155671|gb|EFT99687.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0043]
 gi|315158158|gb|EFU02175.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0312]
 gi|315164097|gb|EFU08114.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1302]
 gi|315168953|gb|EFU12970.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1341]
 gi|315169813|gb|EFU13830.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX1342]
 gi|315575783|gb|EFU87974.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0309B]
 gi|315577625|gb|EFU89816.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0630]
 gi|315580435|gb|EFU92626.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0309A]
 gi|329571615|gb|EGG53296.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecalis TX1467]
          Length = 435

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 168/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--NAFHEALVNAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 264 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R  + +G M  
Sbjct: 324 TYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRETT-LGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++    ER +    + +    
Sbjct: 383 YITHAE--------------GKHFQPMNANFGLFPELPERIRDKKERYEAIANRALDVQA 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 QVIQSL 434


>gi|315145128|gb|EFT89144.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX2141]
 gi|315160538|gb|EFU04555.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0645]
 gi|323480810|gb|ADX80249.1| tRNA:m(5)U-54 methyltransferase [Enterococcus faecalis 62]
          Length = 435

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 168/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--NAFHEALVNAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 264 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R  + +G M  
Sbjct: 324 TYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRETT-LGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++    ER +    + +    
Sbjct: 383 YITHAE--------------GKHFQPMNANFGLFPELPERIRDKKERYEAIANRALDVQA 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 QVIQSL 434


>gi|299536759|ref|ZP_07050067.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus fusiformis ZC1]
 gi|298727771|gb|EFI68338.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus fusiformis ZC1]
          Length = 437

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 174/490 (35%), Gaps = 72/490 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++   G    
Sbjct: 6   VNVIGAGLAGSEAAWQIAKRGIKVKLYEMRPVKQTPAHHTDKFAELVCSNSLRANGLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++ + AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRMLDSVILKAADQC------------SVPAGGALAVDRHEFAGYVTDTVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV        +I++  +   S      +   TG      +        A  +
Sbjct: 114 PLVEVIHEEVTEIPEGITVIATGPLT--SKALAEKIQGLTG------LDYLYFYDAAAPI 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+          K+  D R        + + 
Sbjct: 166 IEKDSIDMNKVYLK-----SRYDKGEAAYLNCP------MTKEEFD-RFRQALIEAEVVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIYFEGCMPIEVM-------AARGEKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEK 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + ++   +F AGQ+ G  GY E+A  GL+AGIN+AR +   + + F   ++ +G M  
Sbjct: 325 TYQLREQKNIFFAGQMTGVEGYVESAGSGLIAGINAARLALGQEPVIFPF-ETALGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                   + +P N +  + P           R +  A   +  + 
Sbjct: 384 YITEAQS--------------KNFQPMNVNFGIFPDLPPGRRSKPERAEMHAA--RAIST 427

Query: 474 LRSLLKSLVL 483
           +R+ + S  +
Sbjct: 428 IRNFVNSQTI 437


>gi|70726664|ref|YP_253578.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus haemolyticus
           JCSC1435]
 gi|81170604|sp|Q4L5V3|TRMFO_STAHJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|68447388|dbj|BAE04972.1| glucose-inhibited division protein [Staphylococcus haemolyticus
           JCSC1435]
          Length = 435

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 115/500 (23%), Positives = 184/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V ++G G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNIVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIISAADKARV------------PAGGALAVDRHDFSGYITETLRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNVTVINEEINSIPEGYTIIATGPLTT--ENLAKEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPTNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 253 -KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E  K   +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELIKEDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLDKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +  A+  +   +L +  K+L
Sbjct: 416 RYEAQANRALEYLENYKKTL 435


>gi|281417193|ref|ZP_06248213.1| gid protein [Clostridium thermocellum JW20]
 gi|281408595|gb|EFB38853.1| gid protein [Clostridium thermocellum JW20]
          Length = 436

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 162/471 (34%), Gaps = 50/471 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           + VIG G AGCEAA   AK G    L   K               L   + +R     +A
Sbjct: 5   INVIGAGLAGCEAAWQIAKRGIKVKLFEMKPKKFSPAHHMETFAELVCSNSLRSNQLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +  + PA  G     DR  +   +   I   EN++VI  EV
Sbjct: 65  VGLLKEEMRLLDSIIMKCADAAQVPA--GGALAVDRTKFSQMVTELIKQNENIEVINEEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I             +T  LT+G   + +               +P  +  +
Sbjct: 123 RELPKEGITIV------------ATGPLTSGDLSKHLADFVGEGYLHFFDAAAPIVTFES 170

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   GT   ++      +K E +     L+       K  +R        
Sbjct: 171 IDMNKAFKAARYGRGTDDYINCPM---NKEEYEIFWNELVNAELAEVKDFDR-------- 219

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E        ++  A    D   +GP     + D     G+     + L  +     +
Sbjct: 220 ---EVVFEGCMPVETMAKRGKDTLRFGPLKPVGLVDP--NTGKEPYAVVQLRQDNSEGTM 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE    +R G      +IN P  L  T   KK   +
Sbjct: 275 YNMVGFQTRLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTFINSPVLLDATYCLKKSPNI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQI G  GY E+A+ G+VAGIN+A      D + F ++ + IG +   ++   +   
Sbjct: 335 YFAGQITGVEGYVESASSGMVAGINAAMDFLGKDRVVFPKSTA-IGALSHYVSDSSI--- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNF 473
                       + +P N +  +     +K+    +R  +   + ++    
Sbjct: 391 -----------KNFQPMNVNFGIMESFPLKIRDKRKRNYETAMRALKILKE 430


>gi|228475054|ref|ZP_04059782.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis SK119]
 gi|228271039|gb|EEK12427.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus hominis SK119]
          Length = 435

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 183/500 (36%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLDSLIIAAADKARV------------PAGGALAVDRHDFAGYITDTLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 PNVTVLNKEIHSIPEGHTIIATGPLTT--ENLAKEIVEITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L+ +    ++ EK+   E 
Sbjct: 165 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M                               A        +GP     +ED  
Sbjct: 225 CMPFEVM-------------------------------AGRGRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R G    
Sbjct: 253 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVDIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K      + F
Sbjct: 312 NTFINSPDVLNEKYELINNDRIQFAGQMTGVEGYVESAASGLVAGINLAHKLLGKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P   +   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNEKNFQPMNANFGLLPSLDRR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +  A+  +  ++L +  K+L
Sbjct: 416 RYEAQAYRALDYLENFKKTL 435


>gi|16800383|ref|NP_470651.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria innocua Clip11262]
 gi|26006768|sp|Q92C76|TRMFO_LISIN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|16413788|emb|CAC96546.1| gid [Listeria innocua Clip11262]
          Length = 434

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRLLDSIIIESAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTIHTEEVTSIPEGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNTFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A      + I F   +S IG + +
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVQDKEPIVFPP-ESAIGSLAN 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELPTKIRAKQERNEKLAERALDAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 KVAEQL 434


>gi|169827112|ref|YP_001697270.1| tRNA uridine 5-carboxymethylaminomethyl modification protein gid
           [Lysinibacillus sphaericus C3-41]
 gi|205830362|sp|B1HQJ3|TRMFO_LYSSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|168991600|gb|ACA39140.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lysinibacillus sphaericus C3-41]
          Length = 437

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 173/490 (35%), Gaps = 72/490 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++   G    
Sbjct: 6   VNVIGAGLAGSEAAWQIAKRGVKVRLYEMRPVKQTPAHHTDKFAELVCSNSLRANGLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++ + AD                  G     DR  +   +   + + 
Sbjct: 66  VGVIKEEMRILDSVILKAADQC------------SVPAGGALAVDRHEFAGYVTEAVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV        +I++  +   S      +   TG      +        A  +
Sbjct: 114 PLVEVIHEEVTEIPEGITVIATGPLT--SKALAEKIQGLTG------LDYLYFYDAAAPI 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+          K+  D R        + + 
Sbjct: 166 IEKDSIDMDKVYLK-----SRYDKGEAAYLNCP------MTKEEFD-RFRQALIEAEVVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIYFEGCMPIEVM-------ASRGEKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGPQKEVLQLIPGLENVEIVRYGVMHRNTFINSPKVLEK 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + ++   +F AGQ+ G  GY E+A  GL+AGIN+AR +   + I F   ++ +G M  
Sbjct: 325 TYQLREQKNIFFAGQMTGVEGYVESAGSGLIAGINAARLALGQEPIIFPF-ETALGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                   + +P N +  + P           R +  A   +  + 
Sbjct: 384 YITEAQS--------------KNFQPMNVNFGIFPELPPGRRSKPERAEMHA--TRAIST 427

Query: 474 LRSLLKSLVL 483
           + + + S  +
Sbjct: 428 IHNFVNSQTI 437


>gi|260890890|ref|ZP_05902153.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859443|gb|EEX73943.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 264

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 96/259 (37%), Positives = 139/259 (53%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IV+G GHAG EAA VAA+ G  TAL T     I  MSCNP++GG GK HLV E+ 
Sbjct: 2   KNYDIIVVGAGHAGVEAALVAARHGLKTALFTIYLDNIAMMSCNPSVGGPGKSHLVSELG 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L G M R  D   +Q + LN  KG A R  R QAD+  YR+ M+  I  QENLD++QG 
Sbjct: 62  MLGGEMARHIDNYNLQLKNLNHTKGLASRITRAQADKYWYRIKMREIIEKQENLDLVQGI 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E   +  +            VVL TGTFL G   +G +K  +GR G+  S  L 
Sbjct: 122 VVDLIVENKKVMGVEDNLGIKYGAKAVVLCTGTFLGGEYVMGDVKYSSGRQGEPASVDLP 181

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  +++ F+  R +T TP R+   +I + KTE+   +++   FS+ T K   R  + G+ 
Sbjct: 182 DRLVEYGFELDRYQTATPPRIAKSSIDFSKTEELKGEDKPRYFSYETKKNIIRLYQLGLH 241

Query: 244 RTNLETHRIIMENIKHSAI 262
             +L+ +    + +    +
Sbjct: 242 SQHLKQYEWDRKCLNIRPL 260


>gi|227551194|ref|ZP_03981243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|227179662|gb|EEI60634.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
          Length = 462

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 178/489 (36%), Gaps = 73/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 21  VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 80

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 81  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 128

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 129 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 179

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 180 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 221

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 222 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 278

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 279 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 338

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 339 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 397

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 398 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 443

Query: 472 NFLRSLLKS 480
             ++  L+ 
Sbjct: 444 ETIKKELEK 452


>gi|257887689|ref|ZP_05667342.1| glucose inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257896183|ref|ZP_05675836.1| glucose inhibited division protein A [Enterococcus faecium Com12]
 gi|257823743|gb|EEV50675.1| glucose inhibited division protein A [Enterococcus faecium
           1,141,733]
 gi|257832748|gb|EEV59169.1| glucose inhibited division protein A [Enterococcus faecium Com12]
          Length = 443

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 178/489 (36%), Gaps = 73/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 2   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 62  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 109

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 110 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 161 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 202

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 203 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 259

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 260 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 319

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 320 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 378

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 379 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 424

Query: 472 NFLRSLLKS 480
             ++  L+ 
Sbjct: 425 ETIKKELEK 433


>gi|302872578|ref|YP_003841214.1| gid protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575437|gb|ADL43228.1| gid protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 436

 Score =  272 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 174/489 (35%), Gaps = 70/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA    K G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANAITKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A A                 G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAQAT------------SVEAGQALAVDRYKFSEYITQKIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV     +K ++             ST  LTT + L  +  + + K     
Sbjct: 110 NELIEVIHEEVTEVPRDKVVVV------------STGPLTTESLLSDISKLCENKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  ER        + I
Sbjct: 158 DAAAPIVLRDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--ERFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   +GP     I D   R G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTMRFGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+AA G++AGIN+A +    + +    +   IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESAATGIIAGINAAMQVLGKEPVSLPPSTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  +
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEIAKIKDKEKRKLLIAQKSLD 425

Query: 473 FLRSLLKSL 481
             + +   +
Sbjct: 426 ICKEVANKI 434


>gi|293377183|ref|ZP_06623391.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium PC4.1]
 gi|292644203|gb|EFF62305.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecium PC4.1]
          Length = 445

 Score =  272 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 178/489 (36%), Gaps = 73/489 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLNSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            N ++    +    +        I+  A        +GP     +ED   + G+R    I
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLK 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F + ++ IG M 
Sbjct: 322 PTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFPQ-ETAIGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + ++  
Sbjct: 381 YYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYEAIAQRALKAN 426

Query: 472 NFLRSLLKS 480
             ++  L+ 
Sbjct: 427 ETIKKELEK 435


>gi|51892620|ref|YP_075311.1| tRNA (uracil-5-)-methyltransferase Gid [Symbiobacterium
           thermophilum IAM 14863]
 gi|81170607|sp|Q67PC6|TRMFO_SYMTH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|51856309|dbj|BAD40467.1| glucose-inhibited division protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 447

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 174/471 (36%), Gaps = 47/471 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AG EAA  AA+LG    L   +     ++        L   + +R     +A
Sbjct: 6   VTVIGAGLAGSEAAWQAARLGVKVTLYEMRPHVTTAVHRTGLFAELVCSNSLRGAGLENA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  R       PA  G      RE +   +   + S  N+ V++ EV
Sbjct: 66  VGLLKEEMRRLGSLILREALQHAVPA--GGALAVSREEFAAGVTAALTSHPNITVVREEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +  ++             ++  LT+      +      +  A     +P  ++  
Sbjct: 124 REIPPDGVVVI------------ASGPLTSAPLAEAIRRFTGEESLAFYDAAAPIVNIET 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G     D       + E +   E L+               C    
Sbjct: 172 VNMDKVFRMSRYGKGEGD--DYLNCPLTREEYEAFYEALVTAEKAMPHNPEDAQVCF--- 226

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                       ++  A    D   YGP     + D   R G R    + L  +     +
Sbjct: 227 ------FEGCLPVEEIARRGPDALRYGPMKPVGLIDP--RTGRRPWAVVQLRQDNAAGTL 278

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T+L    Q +  R IPGLE+    R G      ++ +P+ L+PT E+++ +GL
Sbjct: 279 YNMVGFQTSLKWSEQKRVFRMIPGLEEAEFERYGVIHRNTFMKSPRLLYPTGESRQRAGL 338

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GLVAGIN+AR++  L+ + F R ++ IG ++  +T       
Sbjct: 339 FFAGQMTGVEGYVESAAGGLVAGINAARRALGLEPVTFPR-ETAIGSLLHYITHADPEH- 396

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                         +P N    L P  ++   I ++R ++ A   +  + L
Sbjct: 397 -------------FQPMNIAFGLMP-PLEGPKIRDKRARKRAISERALDVL 433


>gi|317129217|ref|YP_004095499.1| gid protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474165|gb|ADU30768.1| gid protein [Bacillus cellulosilyticus DSM 2522]
          Length = 434

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 168/480 (35%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIAKRGIPVHLYEMRPKKQTPAHHTDKFAELVCSNSLRANTLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ + AD                  G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRILDSVIIQSADDC------------SVPAGGALAVDRHEFAALVTERVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           E + V + EV        II              T  LT+ +    +  +   +      
Sbjct: 113 ELVTVFEDEVTEIPEGPTIIC-------------TGPLTSESLSHRLKELTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +      +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDADSIDRNKVYLKSRYDKGEAAYL-----NCPMTEEEF--NTFYDALIEAETVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   +  +R    + 
Sbjct: 213 VKEFEKEMFFEGCMPVEVM-------AKRGRKTLLFGPMKPVGLEDP--KTNKRPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T +    Q + I+ IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDNSSGTLFNIVGFQTHMKWGPQKEVIQLIPGLENAEIVRFGVMHRNTFINSPNLLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + +    LF AGQ+ G  GY E+AA GLVAGIN++R   + + + F   ++ IG M  
Sbjct: 324 TYQYRDRDDLFFAGQMTGVEGYVESAAAGLVAGINASRLIQEKETVTFPN-ETVIGSMAQ 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                  + +P NA+  L  P   ++    ER +K   + ++   
Sbjct: 383 YITTANH--------------KNFQPMNANFGLLPPFEQRIKNKQERNEKHANRALETIQ 428


>gi|313619214|gb|EFR90978.1| tRNA:M(5)U-54 methyltransferase [Listeria innocua FSL S4-378]
          Length = 428

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 164/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIESAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTIHTEEVTSIPEGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNTFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A      + I F   +S IG + +
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVQDKEPIVFPP-ESAIGSLAN 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELPAKIRAKQERNEKLAERALDAIK 428


>gi|295706293|ref|YP_003599368.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium DSM 319]
 gi|294803952|gb|ADF41018.1| tRNA:m(5)U-54 methyltransferase [Bacillus megaterium DSM 319]
          Length = 434

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 167/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   INVIGAGLAGSEAAWQIAKRGLKVRLYEMRPVKQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R AD   +              G     DR  +   +   + + 
Sbjct: 66  VGVLKEEMRLLDSVIIRSADECAV------------PAGGALAVDRHEFAARVTESVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+        +I             +T  LT+      +  +          
Sbjct: 114 PNVTVVNEEITEIPQGPTVI-------------ATGPLTSKDLSEQLRALTSEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       K E      R        + + 
Sbjct: 161 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---TKEEFH----RFHEALINAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +ED   + G+R    + 
Sbjct: 214 LKEFEKEIYFEGCMPIEVM-------ASRGEKTMLFGPMKPVGLEDP--KTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + +  IPGLE   ++R G      +IN PK L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGAQKEVLSLIPGLENAEVVRYGVMHRNTFINSPKLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + ++   LF AGQ+ G  GY E+AA GL+AG+N+AR     + +   + ++ IG M  
Sbjct: 325 TYQYRERDDLFFAGQMTGVEGYVESAASGLMAGMNAARLVLGEELVVLPQ-ETAIGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +T                   + +P NA+  L   + +++    ER +    + ++   
Sbjct: 384 YITHTSA--------------KNFQPMNANFGLFKELEVRIKNKQERNETLAKRALETIQ 429


>gi|315612954|ref|ZP_07887865.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315064|gb|EFU63105.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 444

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                           N   P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADS-----------------------NHFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|293365193|ref|ZP_06611910.1| glucose-inhibited division protein Gid [Streptococcus oralis ATCC
           35037]
 gi|291316643|gb|EFE57079.1| glucose-inhibited division protein Gid [Streptococcus oralis ATCC
           35037]
          Length = 466

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 165/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 22  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 80

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DR+ +   +
Sbjct: 81  GDALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMV 128

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             ++ +   ++V++ E+    T+   +  +  +  D    +   +    G +        
Sbjct: 129 TEKVANHPLIEVVRDEITELPTDVITVVATGPLTSDALAEKIHALNGGDGFYFYD----- 183

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  +  +   ++K      R   G  A L+          KQ        
Sbjct: 184 ----AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------ 222

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 223 MDFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYT 280

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 281 GPRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGV 340

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR       
Sbjct: 341 MHRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESE 400

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
             F  T + IG +   +T                               P+ +  G I E
Sbjct: 401 AIFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKE 436

Query: 459 RRQKRFAKYIQEYNFLRSL 477
              +R       Y  +   
Sbjct: 437 LEGERIRDKKARYEKIAER 455


>gi|306825444|ref|ZP_07458784.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432382|gb|EFM35358.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVHAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDNYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|307709129|ref|ZP_07645588.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK564]
 gi|322376442|ref|ZP_08050935.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. M334]
 gi|307620075|gb|EFN99192.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK564]
 gi|321282249|gb|EFX59256.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. M334]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 162/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|331266590|ref|YP_004326220.1| tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326683262|emb|CBZ00880.1| tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 162/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|168494371|ref|ZP_02718514.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575654|gb|EDT96182.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 165/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNNGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   + F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEVIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|307708581|ref|ZP_07645045.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis NCTC 12261]
 gi|307615330|gb|EFN94539.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis NCTC 12261]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 162/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVTNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               I   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALINAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAVF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|307703731|ref|ZP_07640672.1| tRNA:m(5)U-54 methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307622566|gb|EFO01562.1| tRNA:m(5)U-54 methyltransferase [Streptococcus oralis ATCC 35037]
          Length = 444

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 164/498 (32%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++ +   ++V++ E+    T+   +  +  +  D    +   +    G +         
Sbjct: 108 EKVANHPLIEVVRDEITELPTDVITVVATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR        
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R       Y  +   
Sbjct: 416 EGERIRDKKARYEKIAER 433


>gi|121533771|ref|ZP_01665598.1| gid protein [Thermosinus carboxydivorans Nor1]
 gi|121307762|gb|EAX48677.1| gid protein [Thermosinus carboxydivorans Nor1]
          Length = 439

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 170/478 (35%), Gaps = 51/478 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VTVIGAGLAGSEAAWQIAEAGVDVDLFEMRPKVMTPAHHTGFFAELVCSNSLRAAAIENA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  R  +V + PA  G     DRE +   +   I +   + VI  EV
Sbjct: 64  VGLLKEEMRRLNSVIMRAADVNRVPA--GGALAVDREKFSRMVTELISAHPRIRVIAEEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 + ++             ++  LT+      +  +            +P  +  +
Sbjct: 122 KDIPNVQPLVI------------ASGPLTSPALSEAIARLTGHDYLYFYDAAAPLVTADS 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   G     D   +    T++++  ER        +    ++ E  I  
Sbjct: 170 LNMDKIYRASRYGKG-----DDDYLNCPMTKEEY--ERFWHELITAETAPIKEFEKEIFF 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++       A    D   +GP     +   +   GE     + L  +     +
Sbjct: 223 EGCMPVEVM-------AKRGIDTLRFGPMKPVGLRHPV--TGEIPYAVVQLRQDNGAATL 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE    +R G      +IN PK L PTL+ +    +
Sbjct: 274 YNIVGFQTHLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTFINSPKVLKPTLQMQNNPAI 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+AA G+VAGIN+AR +   + + F    ++ G +   +T+      
Sbjct: 334 LFAGQITGVEGYVESAACGIVAGINAARLARGQEPLVFPEDTAH-GALCRYITNADPRH- 391

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
                         +P N +  L P   +   + ++++K      +    LR+ ++ L
Sbjct: 392 -------------FQPMNVNFGLLPSLDQ--PVRDKKRKNTIIAQRALASLRNFIEKL 434


>gi|253700155|ref|YP_003021344.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter sp. M21]
 gi|259547954|sp|C6E557|TRMFO_GEOSM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|251775005|gb|ACT17586.1| gid protein [Geobacter sp. M21]
          Length = 435

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/479 (21%), Positives = 165/479 (34%), Gaps = 52/479 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           + VIGGG AGCEAA  AAK G    L   K +        P +  L   + +R     +A
Sbjct: 5   ITVIGGGLAGCEAAWQAAKRGVKVRLFEMKPNCYSEAHHLPGLSELVCSNSLRGDSLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +        K PA  G     DR+L+   +   I S   ++V++ EV
Sbjct: 65  VGLLKEELRRLESLFMEGAEATKVPA--GGALAVDRDLFSQYITSRIESHPLIEVVREEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E  ++             ++  LT G  L   I              +P  +  +
Sbjct: 123 TRIPEEGIVVL------------ASGPLTAG-LLAQEIGRLAGSYLYFYDAIAPIVAADS 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G         +     E+Q+  +  +      +K+  +  E  +  
Sbjct: 170 IDYGKAFRASRYGKGDGD----DYVNCPMDEEQY--QAFVREILAAEKVEPKSFEKVVHF 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A    +   +GP     + D   R G      I L  E L   +
Sbjct: 224 EGCMPIE-------EMASRGPETLRFGPMKPVGLVDP--RVGVEPHAVIQLRQENLEATM 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE    +R G      +IN P+ L  T + K    +
Sbjct: 275 YNLVGFQTKLTWPEQKRIFRMIPGLENAQFLRLGSMHRNTFINAPELLMATCQLKSDQRI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+A+ G   G+N+AR S   + +     ++ IG +   +T+      
Sbjct: 335 FFAGQITGVEGYVESASSGFAVGVNAARLSKG-EGLVVPPAETAIGALARHITNTEAAH- 392

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P N +  L P    L    ++++KR     +    L   L  L 
Sbjct: 393 -------------FQPMNVNYGLFP---PLPGRIKKKEKRGLLAQRGLEALEMWLPELS 435


>gi|322374518|ref|ZP_08049032.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C300]
 gi|321280018|gb|EFX57057.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C300]
          Length = 444

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 162/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               I   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALINAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|289167791|ref|YP_003446060.1| Gid NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus mitis B6]
 gi|288907358|emb|CBJ22195.1| Gid NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus mitis B6]
          Length = 456

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 164/497 (32%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 12  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 70

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++ + A+A  +              G     DR+ +   +
Sbjct: 71  GDALTNAVGLLKEEMRRLGSVILKSAEATRV------------PAGGALAVDRDGFSQMV 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             ++ +   ++V++ E+    T+   + ++V             +       G       
Sbjct: 119 TEKVTNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD-- 173

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              A  + D  +  +   ++K      R   G  A L+          KQ          
Sbjct: 174 --AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MD 214

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    +     E +      I+  A        YGP     +E      G 
Sbjct: 215 FHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGP 272

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  + IPGLE    +R G   
Sbjct: 273 RDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMH 332

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         
Sbjct: 333 RNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAI 392

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F  T + IG +   +T                               P+ +  G I E  
Sbjct: 393 FPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELE 428

Query: 461 QKRFAKYIQEYNFLRSL 477
            +R       Y  +   
Sbjct: 429 GERIRDKKARYEKIAER 445


>gi|307706444|ref|ZP_07643253.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK321]
 gi|307618154|gb|EFN97312.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK321]
          Length = 444

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ         +F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MNF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|148984684|ref|ZP_01817952.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP3-BS71]
 gi|148998622|ref|ZP_01826062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP11-BS70]
 gi|149006382|ref|ZP_01830094.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP18-BS74]
 gi|168485894|ref|ZP_02710402.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168575605|ref|ZP_02721541.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|221231710|ref|YP_002510862.1| protein Gid homolog [Streptococcus pneumoniae ATCC 700669]
 gi|225854448|ref|YP_002735960.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           JJA]
 gi|225856604|ref|YP_002738115.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           P1031]
 gi|298230562|ref|ZP_06964243.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254564|ref|ZP_06978150.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503049|ref|YP_003724989.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307067600|ref|YP_003876566.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pneumoniae AP200]
 gi|307127505|ref|YP_003879536.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|254789179|sp|B8ZP43|TRMFO_STRPJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789181|sp|C1CDT9|TRMFO_STRZJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|254789182|sp|C1CK27|TRMFO_STRZP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147755620|gb|EDK62667.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP11-BS70]
 gi|147762159|gb|EDK69121.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP18-BS74]
 gi|147923075|gb|EDK74190.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP3-BS71]
 gi|183571064|gb|EDT91592.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183578674|gb|EDT99202.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|220674170|emb|CAR68696.1| protein Gid homolog [Streptococcus pneumoniae ATCC 700669]
 gi|225723936|gb|ACO19789.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae JJA]
 gi|225724389|gb|ACO20241.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae P1031]
 gi|298238644|gb|ADI69775.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799923|emb|CBW32504.1| protein Gid homolog [Streptococcus pneumoniae OXC141]
 gi|306409137|gb|ADM84564.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pneumoniae AP200]
 gi|306484567|gb|ADM91436.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|332075557|gb|EGI86025.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA17545]
 gi|332202798|gb|EGJ16867.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA41317]
          Length = 444

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 165/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNNGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   + F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEVIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|320546745|ref|ZP_08041056.1| tRNA:M(5)U-54 methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320448624|gb|EFW89356.1| tRNA:M(5)U-54 methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 445

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 163/497 (32%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           M   SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ 
Sbjct: 1   MSQSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A++  +              G     DR+ +   +
Sbjct: 60  GDSLTNAVGLLKEEMRRLDSVIMKAAESTRV------------PAGGALAVDRDGFSQMV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             E+ +   ++VI+ E+     +   +             ++  LT+      +  +   
Sbjct: 108 TDEVTNHPLIEVIREEITEIPDDAITVI------------ASGPLTSDALAAKIHELNGG 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +  M   +   R   G  A L+                +    +
Sbjct: 156 DGFYFYDAAAPIVDKSSIDMDKVYLKSRYDKGEAAYLNCPM------------TKEEFMA 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    +     E +      I+  A        YGP     +E      G 
Sbjct: 204 FHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKGP 261

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  R IPGLE    +R G   
Sbjct: 262 RDGEFKTPYAVVQLRQDNAAGSLFNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMH 321

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T  T++   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + + 
Sbjct: 322 RNSYMDSPNLLTETFATRQNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFKGEEPVI 381

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F +T + IG +   +T                               P+ +  G + E  
Sbjct: 382 FPQTTA-IGALPHYITHAESK-----------------------HFQPMNVNFGIVKELE 417

Query: 461 QKRFAKYIQEYNFLRSL 477
             R     + Y  +   
Sbjct: 418 GPRIRDKKERYEKVAER 434


>gi|15902888|ref|NP_358438.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           R6]
 gi|116516642|ref|YP_816316.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           D39]
 gi|149019532|ref|ZP_01834851.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP23-BS72]
 gi|168491031|ref|ZP_02715174.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|169833706|ref|YP_001694391.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397933|ref|YP_002037581.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           G54]
 gi|33301132|sp|Q8DQ51|TRMFO_STRR6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|122278798|sp|Q04KY2|TRMFO_STRP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830363|sp|B1IBA6|TRMFO_STRPI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226707908|sp|B5E446|TRMFO_STRP4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|15458446|gb|AAK99648.1| Glucose inhibited division protein [Streptococcus pneumoniae R6]
 gi|116077218|gb|ABJ54938.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae D39]
 gi|147930907|gb|EDK81887.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996208|gb|ACA36820.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183574642|gb|EDT95170.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|194357600|gb|ACF56048.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae G54]
          Length = 444

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 164/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + +++             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   + F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEVIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|319892266|ref|YP_004149141.1| tRNA:m(5)U-54 MTase gid [Staphylococcus pseudintermedius HKU10-03]
 gi|317161962|gb|ADV05505.1| tRNA:m(5)U-54 MTase gid [Staphylococcus pseudintermedius HKU10-03]
          Length = 434

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 177/498 (35%), Gaps = 94/498 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V ++G G AG EAA   A+ G    L           H T+    + C+ ++ G      
Sbjct: 4   VNIVGAGLAGSEAAFQLAERGIHVNLYEMRPVKQTPAHHTNQFAELVCSNSLRGNALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +  ++ + 
Sbjct: 64  VGVLKEEMRRLDSLIIAAADHARV------------PAGGALAVDRHDFAGYITEKLRNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 112 PNVTVSNEEVTSIPEGPTIIATGPLTT--EPLAKEIVALTG---KDQLYFYD---AAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L  +    +  EK+   E 
Sbjct: 164 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTKEEFDRFYEAALAAEVAPMNDFEKEKYFEG 223

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M                               A        +GP     +ED  
Sbjct: 224 CMPFEVM-------------------------------AGRGEKTLLFGPMKPVGLEDP- 251

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 252 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTRLKWGAQKEVIRLIPGLENVDIVRYGVMHR 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P+ L    E K    LF AGQ+ G  GY E+AA G++AGIN A +      + F
Sbjct: 311 NTFINSPEVLSEIYEFKNRKNLFFAGQMTGVEGYVESAASGMIAGINLAHRMLGKADVVF 370

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERR 460
            R ++ +G M   +             S A    + +P NA+  L  P+  ++    ER 
Sbjct: 371 PR-ETMLGSMAYYI-------------SHATNNKNFQPMNANFGLVPPLEQRIKDKKERY 416

Query: 461 QKRFAKYIQEYNFLRSLL 478
           +    + ++  +  +  L
Sbjct: 417 ETLANRALEHLDHFKQTL 434


>gi|332295805|ref|YP_004437728.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Thermodesulfobium narugense DSM 14796]
 gi|332178908|gb|AEE14597.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Thermodesulfobium narugense DSM 14796]
          Length = 446

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/463 (24%), Positives = 167/463 (36%), Gaps = 56/463 (12%)

Query: 2   INRSYDVI-VIGGGHAGCEAAAVAAKLGA---------STALITHKTSTIGSMSCNPAIG 51
            N+  D I +IG G AG EAA    + G                HKT     + C+ ++G
Sbjct: 3   FNKERDRINIIGAGLAGSEAALFLLEKGYLINVYEMRPKVKTPVHKTDLFAELVCSNSLG 62

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  EI  L   + R+A+ +                G     DRE +   +
Sbjct: 63  NKNIFSASGLLKEEIKILGSNLIRLAEVS------------SVEAGQALAVDREEFSRHV 110

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             +ILS  N++VI+ EV         I             +T  LT+    +        
Sbjct: 111 TNKILSYPNVNVIREEVREIPENTFTIV------------ATGPLTSENLFKYFQKFLGS 158

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           K        SP     +  + F F   R   G  A L+       + E  F  E LI   
Sbjct: 159 KDLYFYDATSPIIKYDSIDLNFAFWANRYNKGDSAYLNCPM---SEKEYDFFYEELIKAD 215

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
            +     +            E +      I+  A    D   YGP     ++D   +  +
Sbjct: 216 SIRSHFPD-----------EERYFEGCLPIEELARRGRDTLLYGPLKPRGLKDP--KTNK 262

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
                + L PE  +  +    G  T LP + Q +  R IP L+    +R G   +  Y N
Sbjct: 263 EPYCVVQLRPENKDKTLFNMVGFQTRLPFKEQDKIFRLIPALKNAEFVRYGVMHKNIYFN 322

Query: 348 PKEL-FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           P  L   +LE+KK + LF AGQI GT GY EA A GL+A IN   K      +   +T +
Sbjct: 323 PSSLIKESLESKKFNNLFFAGQITGTEGYVEAIATGLLAAINLHLKIQGKPHLVLPKT-T 381

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
            +G +I+ + S  V +P  M  S       L+  +   R    
Sbjct: 382 VLGSLINHIISVSVEKPAPMNVSFGLLPPILKKMDKKRRYEEY 424


>gi|307704915|ref|ZP_07641806.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK597]
 gi|307621529|gb|EFO00575.1| tRNA:m(5)U-54 methyltransferase [Streptococcus mitis SK597]
          Length = 444

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 162/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   +             +T  LT+ T    +  +    
Sbjct: 108 EKVANHPLIEVVRDEITELPTDVITVV------------ATGPLTSDTLAEKIHALNDGD 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P   +    M   +   R   G  A L+          KQ          F
Sbjct: 156 GFYFYDAAAPIIDVNTIDMSKVYLKSRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKAPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA G+VAGIN+AR         F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGVVAGINAARLFKGESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|295696105|ref|YP_003589343.1| gid protein [Bacillus tusciae DSM 2912]
 gi|295411707|gb|ADG06199.1| gid protein [Bacillus tusciae DSM 2912]
          Length = 439

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 165/475 (34%), Gaps = 62/475 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AG EAA   A+ G    L           H+T     + C+ ++ G      
Sbjct: 4   VTVVGAGLAGSEAAWQIARQGVPVRLYEMRPTVSTPAHRTDRFAELVCSNSLRGAALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   AD   +              G     DRE +  A+   + + 
Sbjct: 64  VGLLKEEMRRLGSIILEEADRHAV------------PAGGALAVDRERFSAAVTERLEAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +++ + EV            +V         +T  LT+    + +             
Sbjct: 112 PFIEIRREEVTELPPG----IGVV---------ATGPLTSEKLHQAIARWTGEAYLYFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +   +  F   R   G  A ++          +   D R        +   
Sbjct: 159 AAAPVVTRESINWEKVFVASRYDKGEAAYVNCP------MTEDEFD-RFYEALVSAETAP 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E  +         ++       A        +GP     + D   R G+R    + 
Sbjct: 212 LRDFEKEVYFEGCMPVEVM-------ARRGRQTLLFGPMKPVGLVDP--RTGKRPFAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+    R G      Y+N P+ L P
Sbjct: 263 LRQDNAAATLYNIVGFQTHLRWGEQSRVFRLIPGLEEAEFARFGVMHRNTYLNSPRLLLP 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +T++   LF AGQI G  GY E+AA GL+AGIN+ R +   D + +   ++ +G +  
Sbjct: 323 TYQTRRRKTLFFAGQITGVEGYVESAASGLIAGINAGRLARGEDPLTWPP-ETAMGSLAR 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
            +T     +P       A + + L P N   R      +     ER     A ++
Sbjct: 382 YIT---EADPDNFQPMNATFGL-LPPLNPPVR--EKARRHLAASERALATLAAFM 430


>gi|168483013|ref|ZP_02707965.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043339|gb|EDT51385.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|332201408|gb|EGJ15478.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA47368]
          Length = 444

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++ +   ++V++ E+    T+   +  +  +  D    +   +    G +         
Sbjct: 108 EKVANHPLIEVVRDEITELPTDVITVIATGPLTSDTLAEKIHALNDGAGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   +
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R       Y  +   
Sbjct: 416 EGERIRDKKARYEKIAER 433


>gi|226313078|ref|YP_002772972.1| tRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|254789169|sp|C0ZFA9|TRMFO_BREBN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|226096026|dbj|BAH44468.1| tRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
          Length = 437

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/486 (20%), Positives = 167/486 (34%), Gaps = 74/486 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + V+G G AG EAA   A+ G    L           H T     + C+ ++        
Sbjct: 6   ITVVGAGLAGSEAAWQIAQAGVKVKLYEMRPKTQTPAHHTDKFAELVCSNSLRANTLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR  +   +   + + 
Sbjct: 66  VGVLKEEMRRLNSVIIDSADRCAV------------PAGGALAVDRHEFAAHVTDAVRNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V+  E+        +I             +T  LT+      +  +   +      
Sbjct: 114 PLVEVVSEEITEIPDGIVVI-------------ATGPLTSPALSTKLKELTGEEYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   F   R   G  A L         TE++F   R        + + 
Sbjct: 161 AAAPIIEKDSIDMNKVFVASRYDKGEAAYL-----NCPMTEEEF--NRFYDALISAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++ +             ++GP     + D   R G+++   + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVLAKRGHK-------TMTFGPMKPVGLVDP--RTGKKSYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN PK L P
Sbjct: 265 LRQDNSAATLYNIVGFQTHLKWPDQKRVFSLIPGLENCEIVRYGVMHRNTFINSPKLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I     ++ +G M  
Sbjct: 325 TYQYKDRETLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEELIELPP-ETIMGSMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP----IGMKLGCIGERRQKRFAKYIQ 469
            +T+                    +P NA+  L P             E+  +R    IQ
Sbjct: 384 YITTADPKH--------------FQPMNANFGLVPEWPERIRDKRLKNEKLAERALDTIQ 429

Query: 470 EYNFLR 475
            +   R
Sbjct: 430 NFTQER 435


>gi|148992924|ref|ZP_01822543.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP9-BS68]
 gi|168490241|ref|ZP_02714440.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae SP195]
 gi|147928376|gb|EDK79392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571403|gb|EDT91931.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae SP195]
 gi|332073275|gb|EGI83754.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA17570]
          Length = 444

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 164/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + +++             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGAGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   + F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEVIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|270292951|ref|ZP_06199162.1| Gid protein [Streptococcus sp. M143]
 gi|270278930|gb|EFA24776.1| Gid protein [Streptococcus sp. M143]
          Length = 456

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 165/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 12  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 70

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DR+ +   +
Sbjct: 71  GDALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMV 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             ++ +   ++V++ E+    T+   +  +  +  D    +   +    G +        
Sbjct: 119 TEKVANHPLIEVVRDEITELPTDVITVVATGPLTSDALAEKIHALNGGDGFYFYD----- 173

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  +  +   ++K      R   G  A L+          KQ        
Sbjct: 174 ----AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------ 212

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 213 MDFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYT 270

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 271 GPRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGV 330

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR       
Sbjct: 331 MHRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESE 390

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
             F  T + IG +   +T                               P+ +  G I E
Sbjct: 391 AIFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKE 426

Query: 459 RRQKRFAKYIQEYNFLRSL 477
              +R       Y  +   
Sbjct: 427 LEGERIRDKKARYEKIAER 445


>gi|257082470|ref|ZP_05576831.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           E1Sol]
 gi|256990500|gb|EEU77802.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus faecalis
           E1Sol]
          Length = 435

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 167/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L         TE++F            + + 
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--NAFHEALVNAEVVP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 213 LRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 264 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSFMNSPELLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R  + +G M  
Sbjct: 324 TYQSIKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRETT-LGSMAY 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++    ER +    + +    
Sbjct: 383 YITHAE--------------GKHFQPMNANFGLFPELPERIRDKKERYEAIANRALDVQA 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 QVIQSL 434


>gi|116629572|ref|YP_814744.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus gasseri ATCC
           33323]
 gi|282852049|ref|ZP_06261407.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 224-1]
 gi|311110784|ref|ZP_07712181.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri MV-22]
 gi|122273490|sp|Q043R6|TRMFO_LACGA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116095154|gb|ABJ60306.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus gasseri ATCC 33323]
 gi|282556809|gb|EFB62413.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 224-1]
 gi|311065938|gb|EFQ46278.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri MV-22]
          Length = 438

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 175/488 (35%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVELYEMRPKKTTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADETAV------------PAGGALAVDRDKFSSVVTQTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+               +D   I   T  LT+ T    +            
Sbjct: 112 LPNVHVHEEEITKIP-----------KDGITIIA-TGPLTSDTLAEQIKDFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   F+F  + +
Sbjct: 160 DAAAPIVAASSIDRDIVYKKSRYDKGEAAYLNCPM------------TKEEFFNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +             +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 SAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GL+AGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQAGLFFAGQMTGVEGYVESAGSGLIAGINAARETVGEETLVFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
             +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 HYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 ETFKEEKK 436


>gi|312865306|ref|ZP_07725534.1| tRNA:m(5)U-54 methyltransferase [Streptococcus downei F0415]
 gi|311099417|gb|EFQ57633.1| tRNA:m(5)U-54 methyltransferase [Streptococcus downei F0415]
          Length = 443

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++++Y + VIG G AG EAA   AK G    L           HKT+    + C+ +  G
Sbjct: 1   MSQTY-INVIGAGLAGSEAAYQIAKQGIPVRLYEMRGVKPTPQHKTANFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +   +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRKGEEHRV------------PAGGAMAVDREGYAQAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            E+ +   + V++ E+     +   I  +  +  D    +   +    G +         
Sbjct: 108 DELHNHPLIQVVREEITQIPDDAITIIATGPLTSDALAEKIHQLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +      ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIVDIATIDRSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                K      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----KALTEAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  R IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L PT ++KK + LF AGQ+ G  GY E+AA GLVAGIN+AR  N  + +
Sbjct: 320 HRNFYMDSPNLLTPTFQSKKQANLFFAGQMTGVEGYVESAASGLVAGINAARLFNGQEPL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLPHYITHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 ESPRIRDKKERYEKIVQR 433


>gi|238855697|ref|ZP_04645994.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 269-3]
 gi|260664452|ref|ZP_05865304.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932211|ref|ZP_06337658.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|238831682|gb|EEQ24022.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 269-3]
 gi|260561517|gb|EEX27489.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303661|gb|EFA95816.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
          Length = 439

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 175/479 (36%), Gaps = 54/479 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIGGG AG EA+   AK G    L   +   +        +  L   + +R     +A
Sbjct: 5   VTVIGGGLAGSEASYQLAKRGVEVHLYEMRPVKMTPAHETGNLAELVCTNSMRSDQLTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  R  +  K PA  G     DREL+   +  E+   +NL +   E+
Sbjct: 65  VGLLKEEMRRLDSLVLRAADATKVPA--GGALAVDRELFSKYITEELAKFDNLHIHHEEI 122

Query: 125 AGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               +E   I  +  +  D+       +   +GT     +H             +P  + 
Sbjct: 123 TKIPSEGITIIATGPLTSDDL---AKQIKDFSGT---DSLHFFDAA--------APIVAS 168

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  M   +   R   G  A L          ++QF         F  + +     E   
Sbjct: 169 DSIDMDIVYKKSRYDRGEAAYL-----NCPMDKEQFT-------KFWKELVKAETAELHG 216

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
              +          I+  A        +GP     +ED   + G+     + L  +   +
Sbjct: 217 FEKDE--VFEGCMPIEVMAARGEKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAS 272

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKIS 361
            +    G  T L    Q +    IPGLE    +R G      Y+ +P  L  T E KK +
Sbjct: 273 SMYNLVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLNATYEAKKQA 332

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+ G  GY E+A  GLVAGIN++R +   D + F   ++ +G M + +T+    
Sbjct: 333 GLFFAGQMTGVEGYVESAGSGLVAGINASRLAQGKDLVTFPV-ETALGSMANYITTTSSK 391

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                           +P NA   L  P+  K+    ER+Q    + +++       +K
Sbjct: 392 H--------------FQPMNASFSLIPPLEKKIRNKRERKQMISERGLEKLAEFAEEMK 436


>gi|238853069|ref|ZP_04643461.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 202-4]
 gi|238834317|gb|EEQ26562.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri 202-4]
          Length = 438

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 176/488 (36%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVELYEMRPKKTTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADKTAV------------PAGGALAVDRDKFSSVVTQTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+     ++  I             +T  LT+ T    +            
Sbjct: 112 LPNVHVHEEEITKIPKDEITII------------ATGPLTSDTLAEQIKDFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   F+F  + +
Sbjct: 160 DAAAPIVAASSIDRDIVYKKSRYDKGEAAYLNCPM------------TKEEFFNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +             +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 SAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GL+AGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQAGLFFAGQMTGVEGYVESAGSGLIAGINAAREALGEETLVFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
             +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 HYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 ETFKEEKK 436


>gi|149002492|ref|ZP_01827426.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP14-BS69]
 gi|237650521|ref|ZP_04524773.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           CCRI 1974]
 gi|237820811|ref|ZP_04596656.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|147759429|gb|EDK66421.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP14-BS69]
          Length = 444

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 164/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNNGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+ R   +   + F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAVRLFKEESEVIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|332076222|gb|EGI86688.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA41301]
          Length = 444

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 165/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+  +I+ +       +    +         G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD--VITVVAT---GPLTSDALAEKIHALNNG--DDFYFY 160

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 161 DAAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|182683887|ref|YP_001835634.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
 gi|182629221|gb|ACB90169.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           CGSP14]
          Length = 468

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 165/497 (33%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 24  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 82

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DR+ +   +
Sbjct: 83  GDALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMV 130

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             ++ +   ++V++ E+    T+   + +++             +       G       
Sbjct: 131 TEKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGAGFYFYD-- 185

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              A  + D  +  +   ++K      R   G  A L+          KQ          
Sbjct: 186 --AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MD 226

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    ++    E +      I+  A        YGP     +E      G 
Sbjct: 227 FHEALVNAEEAP--LSSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGP 284

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  + IPGLE    +R G   
Sbjct: 285 RDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMH 344

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     
Sbjct: 345 RNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAI 404

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F  T + IG +   +T                               P+ +  G I E  
Sbjct: 405 FPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELE 440

Query: 461 QKRFAKYIQEYNFLRSL 477
            +R       Y  +   
Sbjct: 441 GERIRDKKARYEKIAER 457


>gi|322392102|ref|ZP_08065564.1| tRNA:M(5)U-54 methyltransferase [Streptococcus peroris ATCC 700780]
 gi|321145002|gb|EFX40401.1| tRNA:M(5)U-54 methyltransferase [Streptococcus peroris ATCC 700780]
          Length = 456

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 165/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 12  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 70

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DR+ +   +
Sbjct: 71  GDALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMV 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             +I +   ++V++ E+    T+   +  +  +  D    +   +    G +        
Sbjct: 119 TEKIANHPLIEVVRDEITELPTDAITVVATGPLTSDALAEKIHALNDGDGFYFYD----- 173

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  +  +   ++K      R   G  A L+          KQ        
Sbjct: 174 ----AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------ 212

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 213 MDFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYT 270

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 271 GPRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGV 330

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR       
Sbjct: 331 MHRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESE 390

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
             F  T + IG +   +T                               P+ +  G I E
Sbjct: 391 AIFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKE 426

Query: 459 RRQKRFAKYIQEYNFLRSL 477
              +R       Y  +   
Sbjct: 427 LEGERIRDKKTRYEKIAER 445


>gi|299822638|ref|ZP_07054524.1| tRNA:M(5)U-54 methyltransferase [Listeria grayi DSM 20601]
 gi|299816167|gb|EFI83405.1| tRNA:M(5)U-54 methyltransferase [Listeria grayi DSM 20601]
          Length = 440

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 163/488 (33%), Gaps = 76/488 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G   AL           H T     + C  ++        
Sbjct: 11  VNVIGAGLAGSEAAWQLAQRGIQVALYEMRPVKQTPAHHTDKFAELVCTNSLRANSLTNA 70

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD A                G     DR  +   +  ++   
Sbjct: 71  VGLIKEEMRILDSIIINAADRA------------SVPAGGALAVDRHEFSGYITEQVKQH 118

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V Q EV        II             +T  LT+      +  +          
Sbjct: 119 PFVTVYQEEVTAIPEGPTII-------------ATGPLTSPELAESIKALTGSSYLYFYD 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F            +   
Sbjct: 166 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYL-----NCPMTEREFF--AFYRALVEAETAE 218

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  I         ++       A        +GP     +E+     G R    + 
Sbjct: 219 LKDFEKEIYFEGCMPIEVM-------AKRGMKTLLFGPMKPVGLENP--HTGRRPYAVLQ 269

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  + IPGLE   I+R G      +IN P+ L P
Sbjct: 270 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFQMIPGLENAEIVRYGVMHRNTFINSPEILLP 329

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL AGIN+A+  +  + I F R ++ IG M  
Sbjct: 330 TYQLKAREDLFFAGQMTGVEGYVESAASGLAAGINAAKYVSGEEPITFPR-ETAIGSMAH 388

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                   S +P N +  L P       + +  +++  +  +    
Sbjct: 389 YITHANQH--------------SFQPMNVNFGLFP------DLTDTIREKELRNEKIVER 428

Query: 474 LRSLLKSL 481
             + LK L
Sbjct: 429 ALNALKGL 436


>gi|222530146|ref|YP_002574028.1| tRNA (uracil-5-)-methyltransferase Gid [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254789164|sp|B9MM32|TRMFO_ANATD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222456993|gb|ACM61255.1| gid protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 436

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/489 (21%), Positives = 172/489 (35%), Gaps = 70/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA V +K G    L           HK      + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVISKFGIKVKLFEMKPKKFSPAHKIDNFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A                 G     DR  +   + + I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEAT------------SVEAGQALAVDRYKFSEYITQRIKH 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +I  EV     +K ++             ST  LTT + L  +  +   K     
Sbjct: 110 NGLISIIHEEVTEVPRDKVVVV------------STGPLTTESLLSDISKLCNSKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  ER        + I
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--ERFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   YGP     I D   R G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTMRYGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWSEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+    + I        IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQILGKEPISLPPNTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  N
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEISKIKDKEKRKLLIAQKSLN 425

Query: 473 FLRSLLKSL 481
             R L   +
Sbjct: 426 ICRELANKI 434


>gi|225858738|ref|YP_002740248.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           70585]
 gi|254789178|sp|C1C6S2|TRMFO_STRP7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225720385|gb|ACO16239.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae 70585]
          Length = 444

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 164/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNNGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|301794083|emb|CBW36489.1| protein Gid homolog [Streptococcus pneumoniae INV104]
 gi|332204945|gb|EGJ19010.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA47901]
          Length = 444

 Score =  269 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + +++             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRIFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|222054658|ref|YP_002537020.1| gid protein [Geobacter sp. FRC-32]
 gi|254789173|sp|B9M5T8|TRMFO_GEOSF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221563947|gb|ACM19919.1| gid protein [Geobacter sp. FRC-32]
          Length = 437

 Score =  269 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 168/476 (35%), Gaps = 56/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDAL 65
           + +IGGG AGCEAA  AA+ G +  L   K          P +  L   + +R   +D  
Sbjct: 6   IKIIGGGLAGCEAAWQAAERGVAVKLHEMKPERYSPAHHLPGLAELVCSNSLRGESLDNA 65

Query: 66  DGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            GL+      +G  F       + PA  G     DR+L+   +  +I +   ++V+ GEV
Sbjct: 66  VGLLKEELKRSGSLFIAAALATRVPA--GGALAVDRQLFSDYITEKITNHPLIEVVYGEV 123

Query: 125 AGFNTEKNIIS--SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           A    E  +I     +  D      +++   TG +L                  +P  + 
Sbjct: 124 AQIPEEGIVIVASGPLTSDRL---AASIATHTGNYL------------YFYDAIAPIVTA 168

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +      F   R   G         +     E  +  +  +      DK+  +  E  +
Sbjct: 169 DSIDFGKAFRASRYGKGDGD----DYLNCPMDETTY--KAFVAALLGGDKVAAKDFEKVV 222

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                     + E          +   +GP     + D   R G      + L  E  + 
Sbjct: 223 HFEGCMPIEEMAE-------RGPETLRFGPMKPVGLPDP--RTGVEPYAVVQLRQENRDG 273

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q +    IPGLE  + +R G      +IN P+ L PT + K   
Sbjct: 274 TLFNLVGFQTKLTYSEQKRIFSLIPGLEHADFVRLGSMHRNTFINAPQLLLPTFQLKNTP 333

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+A  G +AGIN AR +          T + +G ++  +TS    
Sbjct: 334 RILFAGQITGVEGYVESAGSGFMAGINVARLAKGGALTVPPPTTA-LGALVHHITSVDTK 392

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                           +P N +  L P   +LG   +++ KR     +    L   
Sbjct: 393 H--------------FQPMNVNYGLFP---ELGGKVKKKDKRARLAERALTDLTEW 431


>gi|289550958|ref|YP_003471862.1| tRNA:m(5)U-54 MTase gid [Staphylococcus lugdunensis HKU09-01]
 gi|315658460|ref|ZP_07911332.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289180490|gb|ADC87735.1| tRNA:m(5)U-54 MTase gid [Staphylococcus lugdunensis HKU09-01]
 gi|315496789|gb|EFU85112.1| tRNA:M(5)U-54 methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 435

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 186/500 (37%), Gaps = 95/500 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   A+ G +  LI          H T     + C+ ++ G      
Sbjct: 5   VNVIGAGLAGSEAAYQLAQRGINVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD A          K PA  G     DR  +   +   + S 
Sbjct: 65  VGVLKEEMRRLDSLIIKAADQA----------KVPA--GGALAVDRHDFAGYVTDALRSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V+  E+       +II++  +  +S+     +V  TG   +  ++       A  +
Sbjct: 113 PNVTVLNEEITQIPDGHSIIATGPLTTSSL--AQEIVNITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L  +    ++ EK+   E 
Sbjct: 165 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLAAEVAPVNEFEKEKYFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M ++                                     +GP     +ED  
Sbjct: 225 CMPFEVMAER-------------------------------GRKTLLFGPMKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + I+ IPGLE V I+R G    
Sbjct: 253 -KTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVEIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L    E      +  AGQ+ G  GY E+AA GLVAG+N A K      + F
Sbjct: 312 NTFINSPDVLNEKYELIGNEHIQFAGQMTGVEGYVESAASGLVAGVNLAHKLLAKGEVIF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            R ++ IG M   +             S A+   + +P NA+  L P+  K   I ++++
Sbjct: 372 PR-ETMIGSMAYYI-------------SHAKNDKNFQPMNANFGLLPVLEKR--IKDKKE 415

Query: 462 KRFAKYIQEYNFLRSLLKSL 481
           +      +   +L    K+L
Sbjct: 416 RYETLANRALEYLEKYKKTL 435


>gi|301801784|emb|CBW34495.1| protein Gid homolog [Streptococcus pneumoniae INV200]
          Length = 444

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVVATGPLTSDALAKKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR         F
Sbjct: 322 NSYMDSPNLLGQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESQAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|113953825|ref|YP_730348.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9311]
 gi|123327861|sp|Q0IB24|TRMFO_SYNS3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|113881176|gb|ABI46134.1| gid protein [Synechococcus sp. CC9311]
          Length = 459

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 167/501 (33%), Gaps = 74/501 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG 52
           ++    V+VIG G AG EAA   AK G    L           H +S    + C+ + G 
Sbjct: 1   MSEQSSVVVIGAGLAGTEAAWQVAKAGVPVTLWEMRPFKRSPAHHSSEFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  L+ + AD                  G     DR  Y  A+ 
Sbjct: 61  LSSDRAAGLLQEELRRLGSLVIQTADHH------------SVPAGGALAVDRGRYSAALT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     + + + E         I         S      +   TG   R   H     
Sbjct: 109 SALDDHPLVTIRREEQLTLPDPDQIAVLATGPLTSEALADDLRAFTG---REDCHFFD-- 163

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + +  S  +  +F    +D G          D   I     + QF        +F
Sbjct: 164 -AASPIVEGESIDMTKAFRASRYDKG----------DADYINCPMDQDQF-------LAF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK------- 281
               +   Q E      N  T       I+  A    D   YGP     + D        
Sbjct: 206 RAALLDAEQAELKDFDQNSATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVND 265

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             VR  +R    + L  E  +  +    G  T L    Q + +R IPGLE+ + +R G  
Sbjct: 266 RDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLIPGLEQADFVRFGVM 325

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++  P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR  +  D +
Sbjct: 326 HRNTFLEAPELLEPTLQFRRRPHLLAAGQITGTEGYAAAVAGGWLAGTNAARLVHGHDPM 385

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
               T + IG +   ++                     +P   +  L P   +  CI E+
Sbjct: 386 QLPHT-TMIGALTHFISEAPS--------------GKFQPMPPNFGLMPQLQE--CIREK 428

Query: 460 RQKRFAKYIQEYNFLRSLLKS 480
           R +  A   +    L+  +  
Sbjct: 429 RARYGAYRDRALADLQRTIDE 449


>gi|223932160|ref|ZP_03624164.1| gid protein [Streptococcus suis 89/1591]
 gi|302023781|ref|ZP_07248992.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 05HAS68]
 gi|330832814|ref|YP_004401639.1| gid protein [Streptococcus suis ST3]
 gi|223899141|gb|EEF65498.1| gid protein [Streptococcus suis 89/1591]
 gi|329307037|gb|AEB81453.1| gid protein [Streptococcus suis ST3]
          Length = 444

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 163/490 (33%), Gaps = 82/490 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT     + C+ +  G      
Sbjct: 6   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSFRGDSLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE +  A+  EI + 
Sbjct: 66  VGLLKEEMRRLDSIIMRAGEAHRV------------PAGGAMAMDRENFSQAVTDEIHNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI+GE+     +   +             +T  LT+      +  +          
Sbjct: 114 PLIEVIRGEITDIPDDAITVI------------ATGPLTSDALAEKIHALNGGDGFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L+         ++QF        +F    I+
Sbjct: 162 AAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPM-----NKEQFT-------AFYEALIS 209

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER------ 288
             +    +     E +      I+  A        YGP     +E      G R      
Sbjct: 210 AEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKT 267

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +  + IPGLE    +R G      Y++ 
Sbjct: 268 PYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDS 327

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L  T  TKK   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + + F +T + 
Sbjct: 328 PNLLEQTFATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFRGEEPVIFPQTTA- 386

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG +   +T                               P+ +  G I E    R    
Sbjct: 387 IGALPFYITHTESK-----------------------HFQPMNVNFGIIKELDGPRIRDK 423

Query: 468 IQEYNFLRSL 477
            + Y  +   
Sbjct: 424 KERYEAIAER 433


>gi|327441063|dbj|BAK17428.1| NAD-utilizing enzyme [Solibacillus silvestris StLB046]
          Length = 437

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 167/484 (34%), Gaps = 71/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++   G    
Sbjct: 6   VNVIGAGLAGSEAAWQIAKRGVKVRLYEMRPVKQTPAHHTDKFAELVCSNSLRANGLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD +                G     DR  +   +  ++ + 
Sbjct: 66  VGVIKEEMRKLDSVIIAAADNS------------SVPAGGALAVDRHEFAGIVTEKVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV        +I++  +   S      +   TG               A  +
Sbjct: 114 PLIEVINEEVTEIPEGITVIATGPLT--SEALAKQIQGLTGE------DYLYFYDAAAPI 165

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S ++   ++K      R   G  A L+          K+  D          +   
Sbjct: 166 IEKDSINMDKVYLK-----SRYDKGEAAYLNCP------MTKEEFDA-FREALITAECAP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E            ++       A       ++GP     +ED   +  +R    + 
Sbjct: 214 LKEFEKEKYFEGCMPIEVM-------AARGEKTMTFGPMKPVGLEDP--KTDKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE + I+R G      +IN PK L  
Sbjct: 265 LRQDDAAGTLYNLVGFQTHLKWPEQKRVFSMIPGLENLEIVRYGVMHRNTFINSPKVLTQ 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+A  GL+AGIN+AR +   + + F   ++ +G M  
Sbjct: 325 TYQLKARPNLFFAGQMTGVEGYVESAGSGLIAGINAARMALGQELLYFPH-ETALGAMAR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T                   + +P N +       G ++    ER ++   + ++   
Sbjct: 384 YITHTDA--------------KNFQPMNVNFGIFPEFGERIKSKPERAERHANRALEAIQ 429

Query: 473 FLRS 476
              +
Sbjct: 430 NFIN 433


>gi|306829300|ref|ZP_07462490.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428386|gb|EFM31476.1| tRNA:M(5)U-54 methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 444

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/498 (19%), Positives = 164/498 (32%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++ +   ++V++ E+    ++   +  +  +  D    +   +    G +         
Sbjct: 108 EKVANHPLIEVVRDEITELPSDVITVVATGPLTSDTLAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     ++      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEAMAKRGIKTMLYGPMKPVGLKYPDDYTG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR        
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R       Y  +   
Sbjct: 416 DGERIRDKKARYEKIAER 433


>gi|312876488|ref|ZP_07736471.1| gid protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796699|gb|EFR13045.1| gid protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 436

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 172/484 (35%), Gaps = 70/484 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA   AK G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANAIAKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A                 G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEAT------------SVEAGQALAVDRYKFSEYITQKIRQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              ++VI  EV     +K ++              T  LTT   L  +  + + K     
Sbjct: 110 NGLIEVIHEEVTEVPRDKVVVVC------------TGPLTTQKLLSDISKLCESKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+   ++                +     F  + +
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSNDYINCPM------------TKEEYEKFYWELV 205

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
               IE      +L     I   I+  A    D   +GP     I D   R G+     +
Sbjct: 206 NAEVIEVKDFEKDLLFEGCI--PIEEMARRGIDTMRFGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNIVGFQTRLKWGEQKRVFRLIPGLENAEFVRFGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+    + +    +   IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQVLGKEPVSLPSSTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  +
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEIAKIKDKEKRKLLIAQKSLD 425

Query: 473 FLRS 476
             + 
Sbjct: 426 ICKQ 429


>gi|149010413|ref|ZP_01831784.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|303259853|ref|ZP_07345828.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP-BS293]
 gi|303262267|ref|ZP_07348211.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264689|ref|ZP_07350607.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS397]
 gi|303267218|ref|ZP_07353083.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS457]
 gi|303269504|ref|ZP_07355269.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS458]
 gi|26006770|sp|Q97R84|TRMFO_STRPN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830456|sp|B2IP98|TRMFO_STRPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147764894|gb|EDK71823.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP19-BS75]
 gi|302636590|gb|EFL67081.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639058|gb|EFL69518.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           SP-BS293]
 gi|302640940|gb|EFL71322.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS458]
 gi|302643227|gb|EFL73509.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS457]
 gi|302645776|gb|EFL76005.1| glucose-inhibited division protein A [Streptococcus pneumoniae
           BS397]
          Length = 444

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 164/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +   ++V++ E+    T+   + +++             +       G        
Sbjct: 108 EKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGAGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    ++    E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LSSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|312621561|ref|YP_004023174.1| gid protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202028|gb|ADQ45355.1| gid protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 436

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/489 (22%), Positives = 171/489 (34%), Gaps = 70/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA V  K G    L           HK      + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVITKFGIKVKLFEMKPKKFSPAHKIDNFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A+A                 G     DR  +   + + I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAEAT------------SVEAGQALAVDRYKFSEYITQRIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + VI  EV     +K ++             ST  LTT + L  +  +   K     
Sbjct: 110 NGLISVIHEEVTEVPRDKVVVV------------STGPLTTESLLSDISKLCNSKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  ER        + I
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--ERFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   YGP     I D   R G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTMRYGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+    + I        IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQILGKEPISLPPNTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  N
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEISKIKDKEKRKLLIAQKSLN 425

Query: 473 FLRSLLKSL 481
             R L   +
Sbjct: 426 ICRELANKI 434


>gi|254852670|ref|ZP_05242018.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-503]
 gi|300765312|ref|ZP_07075296.1| gid protein [Listeria monocytogenes FSL N1-017]
 gi|258605988|gb|EEW18596.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-503]
 gi|300513995|gb|EFK41058.1| gid protein [Listeria monocytogenes FSL N1-017]
          Length = 434

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 167/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFP-TETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 RVAEEL 434


>gi|313889372|ref|ZP_07823020.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122204|gb|EFR45295.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 444

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 170/498 (34%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTENFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DR  Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRAGEAHRV------------PAGGAMAVDRLAYAEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            E+ +   ++VI+GE+     +   +  +  +  D    +   +    G +         
Sbjct: 108 AELENHPLIEVIRGEITDIPKDAVTVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  + ++   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIIDKSTINMDKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYTG 259

Query: 287 ERNGH------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R+GH       + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGHFKTPYAVVQLRQDNAAGSLYNMVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+ +K      +
Sbjct: 320 HRNSYMDSPNLLKQTFQSRANENLFFAGQMTGVEGYVESAASGLVAGINAVKKFKGQAEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNINFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIAAR 433


>gi|312126812|ref|YP_003991686.1| gid protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776831|gb|ADQ06317.1| gid protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 436

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 173/489 (35%), Gaps = 70/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +++VIG G AG EAA V  K G    L           HK  T   + C+ ++       
Sbjct: 2   EIVVIGAGLAGVEAANVITKFGIKVKLFEMKPKKFSPAHKIDTFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A A                 G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVMEAAQAT------------SVEAGQALAVDRYKFSEYITQKIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV     +K ++              T  LTT + L  +  +   K     
Sbjct: 110 NELIEVIHEEVTEVPRDKVVVVC------------TGPLTTESLLSDISKLCSSKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  ER        + I
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--ERFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   +GP     I D   R G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTIRFGPLKPVGIIDP--RTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+AA G++AGIN+AR+    + +        IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESAATGIIAGINAARQVLGKEPVSLPPNTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  + ++ +++     +  +
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDNEIAKVKDKEKRKLLIAQKSLD 425

Query: 473 FLRSLLKSL 481
             + +   +
Sbjct: 426 ICKEVANEI 434


>gi|329667431|gb|AEB93379.1| glucose inhibited division protein A [Lactobacillus johnsonii DPC
           6026]
          Length = 438

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 175/488 (35%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVDLYEMRPKKNTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADETAV------------PAGGALAVDRDKFSAVVTKTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+               +D   I   T  LT+ T    +            
Sbjct: 112 LPNVHVHEEEITEIP-----------KDGITIIA-TGPLTSDTLAEQIKEFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   ++F  + +
Sbjct: 160 DAAAPIVAASSINRDIVYKKSRYDKGEAAYLNCPM------------TKEEFYNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                         +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 AAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQTGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGEETLVFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
           + +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 NYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 EAFKEEKK 436


>gi|199599533|ref|ZP_03212921.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus rhamnosus HN001]
 gi|199589574|gb|EDY97692.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus rhamnosus HN001]
          Length = 439

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/477 (21%), Positives = 172/477 (36%), Gaps = 51/477 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + R++ +  ++ VI   +
Sbjct: 64  VGLLKEEMRRLHSIIMQSADATAVPA--GGALAVDREPFSELVTRQLTNHPHIHVIHDVL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     ++             +T  LT       ++ +      +     +P      
Sbjct: 122 TDFPAGITVV-------------ATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDAST 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+      +K E Q   + L+           +        
Sbjct: 169 IDNDIVYKKSRYDRGEAAYLNCPM---NKEEFQAFYKALVTAEVAEGHDFEK-------- 217

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   + G+     + L  +     +
Sbjct: 218 ---MTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     I F +T +  G M   +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAM-GAMAHYIT------- 384

Query: 424 YRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
               TS + +    +P NA+   + P+ +K+    ER Q+   + + +    ++ L+
Sbjct: 385 ---HTSPSHF----QPMNANFGIMPPLAVKVRNKKERNQQLAERALNDLATFQTELQ 434


>gi|227890786|ref|ZP_04008591.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           ATCC 11741]
 gi|227867195|gb|EEJ74616.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           ATCC 11741]
 gi|300214498|gb|ADJ78914.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           (Folate-dependent tRNA (uracil-5-)-methyltransferase)
           (Folate-dependent tRNA(M-5-U54)-methyltransferase)
           [Lactobacillus salivarius CECT 5713]
          Length = 436

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 169/485 (34%), Gaps = 71/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L           H T     + C  ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIANQGVKVRLYEMRPQKLTPAHHTENFAELVCTNSLRANRLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+   + ++   AD                  G     DRE +   +  ++ + 
Sbjct: 65  AGLLKEEMRTFNSIIMESADKH------------SVPAGGALAVDRETFSKEVTEKLHNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+++I  E+        +I++  +  +++     +   TG+   G+         A  +
Sbjct: 113 PNVEIINEEIDEIPEGLTVIATGPLTSDAL--AKDITKFTGS--DGLFFFD----AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+       K E       LI      +   
Sbjct: 165 LEKSSLDMDKVYLK-----SRYDKGEAAYLNAPM---TKDEFYNFYNELIKA----ETAE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E             I       A        YGP     +ED   R G+     + 
Sbjct: 213 LHDFEDDKFFEGCMPIEEI-------ASRGAQTMLYGPLKPVGLEDP--RTGKEPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +    D+    G  T L    Q +    IPGLE    +R G      ++ +P+ +  
Sbjct: 264 LRQDNAAGDLYNIVGFQTHLKWGEQKRVFSMIPGLENARFVRYGVMHRNTFLCSPEVMQA 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +TKK   LF AGQ+ G  GY E+AA GL AG+N+AR +   D + F   ++ +G M  
Sbjct: 324 TYQTKKRPDLFFAGQMTGVEGYVESAASGLYAGLNAARIAQGKDPVIFPE-ETMMGAMAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
            +T   V               + +P NA+  + P   + +    ER  K   + I    
Sbjct: 383 YITHASV--------------KNFQPINANFGIVPKLQERIRNKQERNLKISERAIDRIK 428

Query: 473 FLRSL 477
             ++L
Sbjct: 429 KFKNL 433


>gi|15900822|ref|NP_345426.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           TIGR4]
 gi|111658058|ref|ZP_01408760.1| hypothetical protein SpneT_02000791 [Streptococcus pneumoniae
           TIGR4]
 gi|14972418|gb|AAK75066.1| Gid protein [Streptococcus pneumoniae TIGR4]
          Length = 456

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 165/497 (33%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 12  VVSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 70

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DR+ +   +
Sbjct: 71  GDALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMV 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             ++ +   ++V++ E+    T+   + +++             +       G       
Sbjct: 119 TEKVANHPLIEVVRDEITELPTD---VITVIATGPLTSDALAEKIHALNDGAGFYFYD-- 173

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              A  + D  +  +   ++K      R   G  A L+          KQ          
Sbjct: 174 --AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MD 214

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    ++    E +      I+  A        YGP     +E      G 
Sbjct: 215 FHEALVNAEEAP--LSSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGP 272

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  + IPGLE    +R G   
Sbjct: 273 RDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMH 332

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     
Sbjct: 333 RNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAI 392

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F  T + IG +   +T                               P+ +  G I E  
Sbjct: 393 FPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELE 428

Query: 461 QKRFAKYIQEYNFLRSL 477
            +R       Y  +   
Sbjct: 429 GERIRDKKARYEKIAER 445


>gi|258508407|ref|YP_003171158.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus GG]
 gi|257148334|emb|CAR87307.1| Glucose inhibited division protein A [Lactobacillus rhamnosus GG]
 gi|259649722|dbj|BAI41884.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus GG]
          Length = 440

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/477 (21%), Positives = 172/477 (36%), Gaps = 51/477 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 5   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + R++ +  ++ VI   +
Sbjct: 65  VGLLKEEMRRLHSIIMQSADATAVPA--GGALAVDREPFSELVTRQLTNHPHIHVIHDVL 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     ++             +T  LT       ++ +      +     +P      
Sbjct: 123 TDFPAGITVV-------------ATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDAST 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+      +K E Q   + L+           +        
Sbjct: 170 IDNDIVYKKSRYDRGEAAYLNCPM---NKEEFQAFYKALVTAEVAEGHDFEK-------- 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   + G+     + L  +     +
Sbjct: 219 ---MTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAASL 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+   L
Sbjct: 274 YNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDL 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     I F +T +  G M   +T       
Sbjct: 334 FFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAM-GAMAHYIT------- 385

Query: 424 YRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
               TS + +    +P NA+   + P+ +K+    ER Q+   + + +    ++ L+
Sbjct: 386 ---HTSPSHF----QPMNANFGIMPPLAVKVRNKKERNQQLAERALNDLATFQTELQ 435


>gi|303228925|ref|ZP_07315735.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516339|gb|EFL58271.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 438

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 165/484 (34%), Gaps = 70/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AG EAA   A  G +  L           H+T     + C+ ++        
Sbjct: 6   VTVIGAGLAGSEAAWQLANRGVAVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIENA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA  +              G     DR L+   +  +I S 
Sbjct: 66  VGLLKEEMRRLGSLIMECADATAV------------PAGGALAVDRHLFSAMVTDKIKSH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   EV    TE  +I             ++  LT+ T    +  +          
Sbjct: 114 PNITVHHEEVTSIPTEGTVIF------------ASGPLTSETLGDAIRELTGNTGFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      F   R   G     D   +     E+++  +         + + 
Sbjct: 162 AAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMNEEEY--KHFWHELTHAEAVQ 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  I         I+       A    D   YGP     + DK  R  E +   + 
Sbjct: 215 PKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RTNEESYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q +    IPGLE    IR G      YIN P+ L  
Sbjct: 266 LRKENKEGTMFNLVGFQTHLKWGEQKRVFGLIPGLENAEFIRYGVMHRNTYINSPELLNH 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
             + +    LF AGQ+ G  GY E+AA GL+ G+   R  +    I F +T + IG +  
Sbjct: 326 AFQLQSDHRLFFAGQMTGVEGYLESAASGLMVGLQVKRYLDDNAFINFPKTTA-IGSLSY 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            ++S                  + +P N +  +      ++    E+      + ++E +
Sbjct: 385 YISSYE--------------GSNFQPMNVNFGIMESWPQRIRKKKEKNALIANRALEELD 430

Query: 473 FLRS 476
            L++
Sbjct: 431 TLKA 434


>gi|227889897|ref|ZP_04007702.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319572|ref|YP_003293228.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus johnsonii FI9785]
 gi|227849341|gb|EEJ59427.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397947|emb|CAX66961.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 438

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 175/488 (35%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVDLYEMRPKKNTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADETAV------------PAGGALAVDRDKFSAVVTKTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+               +D   I   T  LT+ T    +            
Sbjct: 112 LPNVHVHEEEITEIP-----------KDGITIIA-TGPLTSDTLAEQIKEFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   ++F  + +
Sbjct: 160 DAAAPIVAASSINRDIVYKKSRYDKGEAAYLNCPM------------TKEEFYNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                         +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 GAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQTGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGEETLVFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
           + +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 NYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 EAFKEEKK 436


>gi|146318555|ref|YP_001198267.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 05ZYH33]
 gi|146320753|ref|YP_001200464.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis 98HAH33]
 gi|253751678|ref|YP_003024819.1| protein Gid homolog [Streptococcus suis SC84]
 gi|253753580|ref|YP_003026721.1| protein Gid homolog [Streptococcus suis P1/7]
 gi|253755607|ref|YP_003028747.1| protein Gid homolog [Streptococcus suis BM407]
 gi|166989570|sp|A4W125|TRMFO_STRS2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989572|sp|A4VUS8|TRMFO_STRSY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145689361|gb|ABP89867.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus suis 05ZYH33]
 gi|145691559|gb|ABP92064.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus suis 98HAH33]
 gi|251815967|emb|CAZ51583.1| protein Gid homolog [Streptococcus suis SC84]
 gi|251818071|emb|CAZ55863.1| protein Gid homolog [Streptococcus suis BM407]
 gi|251819826|emb|CAR45789.1| protein Gid homolog [Streptococcus suis P1/7]
 gi|292558324|gb|ADE31325.1| Gid protein [Streptococcus suis GZ1]
 gi|319758105|gb|ADV70047.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus suis JS14]
          Length = 444

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 159/490 (32%), Gaps = 82/490 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT     + C+ +  G      
Sbjct: 6   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSFRGDSLTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE +  A+  EI + 
Sbjct: 66  VGLLKEEMRRLDSIIMRAGEAHRV------------PAGGAMAMDRENFSQAVTDEIHNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI+GE+     +   +             +T  LT+      +  +          
Sbjct: 114 PLIEVIRGEITEIPEDAITVI------------ATGPLTSDALAEKIHALNGGDGFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +   R   G  A L+         ++QF            ++  
Sbjct: 162 AAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPM-----NKEQF--NAFYEALISAEEAP 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER------ 288
               E            ++       A        YGP     +E      G R      
Sbjct: 215 LNSFEKEKYFEGCMPIEVM-------AKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKT 267

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +  + IPGLE    +R G      Y++ 
Sbjct: 268 PYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRIFQMIPGLENAEFVRYGVMHRNSYMDS 327

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L  T  TKK   LF AGQ+ G  GY E+AA GLVAGIN+ R+ +  + + F +T + 
Sbjct: 328 PNLLEQTFATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFHGEEPVIFPQTTA- 386

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG +   +T                               P+ +  G I E    R    
Sbjct: 387 IGALPFYITHTESK-----------------------HFQPMNVNFGIIKELDGPRIRDK 423

Query: 468 IQEYNFLRSL 477
            + Y  +   
Sbjct: 424 KERYEAIAER 433


>gi|225861168|ref|YP_002742677.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|254789183|sp|C1CRV5|TRMFO_STRZT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225726600|gb|ACO22451.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327389220|gb|EGE87565.1| tRNA:m(5)U-54 methyltransferase [Streptococcus pneumoniae GA04375]
          Length = 444

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 163/496 (32%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   ++V++ E+    T+   + ++V             +       G        
Sbjct: 108 EKVVNHPLIEVVRDEITELPTD---VITVVATGPLTSDALAEKIHALNDGDGFYFYD--- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D  +  +   ++K      R   G  A L+          KQ          F
Sbjct: 162 -AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IP LE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPSLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +     F
Sbjct: 322 NSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEAIF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PDTTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEG 417

Query: 462 KRFAKYIQEYNFLRSL 477
           +R       Y  +   
Sbjct: 418 ERIRDKKARYEKIAER 433


>gi|222153070|ref|YP_002562247.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus uberis 0140J]
 gi|254789180|sp|B9DS62|TRMFO_STRU0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|222113883|emb|CAR42047.1| protein Gid homolog [Streptococcus uberis 0140J]
          Length = 444

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/498 (21%), Positives = 169/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKTS    + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTSNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DR  Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRAGEAHRV------------PAGGAMAVDRVGYAEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            E+ +   ++VI+GE+     +   +  +  +  D    +   +    G +         
Sbjct: 108 AELENNPLIEVIRGEITEIPNDAITVIATGPLTSDALAEKIHALNGGEGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  + ++   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIIDKSTINMDKVYLK-----SRYDKGEAAYLNCPMTK----------EEFLAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDYKTPYAVVQLRQDNAAGSLYNMVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR     + I
Sbjct: 320 HRNSYMDSPNLLKQTFQSRANENLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAI 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLPHYVTHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             KR     + Y  +   
Sbjct: 416 EGKRIRDKKERYEAIAER 433


>gi|116872709|ref|YP_849490.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123458432|sp|A0AI79|TRMFO_LISW6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116741587|emb|CAK20711.1| glucose inhibited division protein A [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 434

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/496 (21%), Positives = 166/496 (33%), Gaps = 95/496 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA     K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEATWQLVKRGIKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIESAD------------KASVPAGGALAVDRHEFSGYITEKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II++  +   ++     +   TG               A  +
Sbjct: 113 PLVTVHTEEVTSIPDGPTIIATGPLTSPAL--AEEIKQLTGE------DYLYFYDAAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G              KT   A +  +T    + EK+   E 
Sbjct: 165 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFKTFYEALVTAETAALKEFEKEVFFEG 224

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +P   M                               A        +GP     +ED  
Sbjct: 225 CMPIEVM-------------------------------AKRGIKTMLFGPLKPVGLEDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q +    IPGLE   I+R G    
Sbjct: 253 -KTGKRPYAVLQLRQDDAAGTLYNMVGFQTHLKWGEQKRVFGLIPGLENAEIVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P  L PT + K    LF AGQ+ G  GY E+AA GL AGIN+A    + + I F
Sbjct: 312 NTFINSPTVLEPTYQLKTRDDLFFAGQMTGVEGYVESAASGLAAGINAANFVQEKETIVF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERR 460
              +S IG +   +T              +  + S +P N +  L P +  K+    ER 
Sbjct: 372 PA-ESAIGSLAHYIT--------------SASKKSFQPMNVNFGLFPELPSKIRAKQERN 416

Query: 461 QKRFAKYIQEYNFLRS 476
           +K   + +     +  
Sbjct: 417 EKLAERALDAIKKVAE 432


>gi|303254410|ref|ZP_07340516.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           BS455]
 gi|302598577|gb|EFL65617.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           BS455]
          Length = 444

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++ +   ++V++ E+    T+   I  +  +  D    +   +    G +         
Sbjct: 108 EKVANHPLIEVVRDEITELPTDVITIIATGPLTSDALAEKIHALNDGAGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    ++    E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LSSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +    
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R       Y  +   
Sbjct: 416 EGERIRDKKARYEKIAER 433


>gi|303231425|ref|ZP_07318156.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513862|gb|EFL55873.1| tRNA:M(5)U-54 methyltransferase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 438

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 164/484 (33%), Gaps = 70/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AG EAA   A  G +  L           H+T     + C+ ++        
Sbjct: 6   VTVIGAGLAGSEAAWQLANRGVAVDLYEMRPVKSSPAHQTDQFAELVCSNSLRAGNIENA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA  +              G     DR L+   +  +I S 
Sbjct: 66  VGLLKEEMRRLGSLIMECADATAV------------PAGGALAVDRHLFSAMVTDKIKSH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   EV    TE  +I             ++  LT+ T    +  +          
Sbjct: 114 PNITVHHEEVTSIPTEGTVIF------------ASGPLTSETLGDAIRELTGNTGFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      F   R   G     D   +     E+++  +         + + 
Sbjct: 162 AAAPIVTAESLNYDKVFAASRYDKG-----DADYLNCPMNEEEY--KHFWHELTHAEAVQ 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  I         I+       A    D   YGP     + DK  R    +   + 
Sbjct: 215 PKDFEKEIYFEGCMPVEIM-------ASRGEDTLRYGPLKPVGLVDK--RTNVESYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q +    IPGLE    IR G      YIN P+ L  
Sbjct: 266 LRKENKEGTMFNLVGFQTHLKWGEQKRVFGLIPGLENAEFIRYGVMHRNTYINSPELLNH 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
             + +    LF AGQ+ G  GY E+AA GL+ G+   R  +    I F +T + IG +  
Sbjct: 326 AFQLQSDHRLFFAGQMTGVEGYLESAASGLMVGLQVKRYLDDNAFINFPKTTA-IGSLSH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            ++S                  + +P N +  +      ++    E+      + ++E +
Sbjct: 385 YISSYE--------------GSNFQPMNVNFGIMESWPQRIRKKKEKNALIANRALEELD 430

Query: 473 FLRS 476
            L++
Sbjct: 431 ALKA 434


>gi|42519035|ref|NP_964965.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus johnsonii NCC
           533]
 gi|50400234|sp|Q74JJ8|TRMFO_LACJO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|41583322|gb|AAS08931.1| glucose inhibited division protein A [Lactobacillus johnsonii NCC
           533]
          Length = 438

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 175/488 (35%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVDLYEMRPKKNTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADETAV------------PAGGALAVDRDKFSAVVTKTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+               +D   I   T  LT+ T    +            
Sbjct: 112 LPNVHVHEEEITEIP-----------KDGITIIA-TGPLTSDTLAEQIKEFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   ++F  + +
Sbjct: 160 DAAAPIVAASSINRDIVYKKSRYDKGEAAYLNCPM------------TKEEFYNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                         +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 GAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQTGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGEETLFFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
           + +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 NYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 EAFKEEKK 436


>gi|323464637|gb|ADX76790.1| tRNA (uracil-5-)-methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 434

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 177/498 (35%), Gaps = 94/498 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V ++G G AG EAA   A+ G    L           H T+    + C+ ++ G      
Sbjct: 4   VNIVGAGLAGSEAAFQLAERGIHVNLYEMRPVKQTPAHHTNQFAELVCSNSLRGNALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD A +              G     DR  +   +  ++ + 
Sbjct: 64  VGVLKEEMRRLDSLIIAAADHARV------------PAGGALAVDRHDFAGYITEKLRNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   EV        II++  +          +V  TG   +  ++       A  +
Sbjct: 112 RNVTVSNEEVTSIPEGPTIIATGPLTT--EPLAKEIVALTG---KDQLYFYD---AAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQFADER 222
            +  S  +   ++K  +D G                   A L  +    +  EK+   E 
Sbjct: 164 IEKDSIDMDKVYLKSRYDKGEAAYLNCPMTKEEFDRFYEAALAAEVAPMNDFEKEKYFEG 223

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +PF  M                               A        +GP     +ED  
Sbjct: 224 CMPFEVM-------------------------------AGRGEKTLLFGPMKPVGLEDP- 251

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            + G+R    + L  +     +    G  T L    Q + IR IPGLE V+I+R G    
Sbjct: 252 -KTGKRPYAVVQLRQDDAAGTLYNIVGFQTRLKWGAQKEVIRLIPGLENVDIVRYGVMHR 310

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             +IN P+ L    E K    LF AGQ+ G  GY E+AA G++AGIN A +      + F
Sbjct: 311 NTFINSPEVLSEIYEFKNRKNLFFAGQMTGVEGYVESAASGMIAGINLAHRMLGKADVVF 370

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERR 460
            R ++ +G M   +             S A    + +P NA+  L  P+  ++    ER 
Sbjct: 371 PR-ETMLGSMAYYI-------------SHATNNKNFQPMNANFGLVPPLEQRIKDKKERY 416

Query: 461 QKRFAKYIQEYNFLRSLL 478
           +    + ++  +  +  L
Sbjct: 417 ETLANRALEHLDHFKQTL 434


>gi|229552208|ref|ZP_04440933.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus rhamnosus LMS2-1]
 gi|258539621|ref|YP_003174120.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus Lc
           705]
 gi|229314430|gb|EEN80403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151297|emb|CAR90269.1| Glucose inhibited division protein A [Lactobacillus rhamnosus Lc
           705]
          Length = 440

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 174/479 (36%), Gaps = 51/479 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 5   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + R++ +   + VI   +
Sbjct: 65  VGLLKEEMWRLHSIIMQSADATAVPA--GGALAVDREPFSELVTRQLTNHPRIHVIHDVL 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     ++             +T  LT       ++ +      +     +P      
Sbjct: 123 TDFPAGITVV-------------ATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDAST 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+      +K E Q   + L+           +        
Sbjct: 170 IDNDIVYKKSRYDRGEAAYLNCPM---NKEEFQAFYKALVTAEVAEGHDFEK-------- 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   + G+     + L  +     +
Sbjct: 219 ---MTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAASL 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE   I+R G      ++ +P  L PT  +K+ + L
Sbjct: 274 YNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRADL 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     I F +T +  G M   +T       
Sbjct: 334 FFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAM-GAMAHYIT------- 385

Query: 424 YRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
               TS + +    +P NA+   + P+ +K+    ER Q+   + + +    ++ L+S+
Sbjct: 386 ---HTSPSHF----QPMNANFGIMPPLAIKVRNKKERNQQLAERALNDLATFQTELQSV 437


>gi|241889922|ref|ZP_04777220.1| tRNA:M(5)U-54 methyltransferase [Gemella haemolysans ATCC 10379]
 gi|241863544|gb|EER67928.1| tRNA:M(5)U-54 methyltransferase [Gemella haemolysans ATCC 10379]
          Length = 434

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 50/473 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           VIVIG G AG EAA   AK G    L   +   +         G L   + +R     +A
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVKVDLYEMRPKKMTPAHKTQNFGELVCSNSLRANNVTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +  + PA  G     DR+ +   +   I +  N++VI  E+
Sbjct: 65  VGLLKEEMRMLDSIIIKCADATQVPA--GGALAVDRDKFSEMITETIKNHPNINVIGEEL 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +             +T  LT+    + + +  K          +P     +
Sbjct: 123 PTIPKGDIPVI-----------VATGPLTSDALSQDIRNYTKQDGLYFYDAAAPIIEKDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M+  +   R   G  A L+                +   F+F  + I        +  
Sbjct: 172 IDMEKVYLKSRYDKGEAAYLNCPM------------TKEEFFNFYNELINAEAAP--LKE 217

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E +       +  A        +GP     +ED   +  +R    + L  +     +
Sbjct: 218 FEKEIYFEGCMPFEEMAKRGEKTLLFGPMKPVGLEDP--KTDKRPYAVVQLRQDNSEGTL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  T   K+   +
Sbjct: 276 YNIVGFQTHLKWGEQKRIINMIPGLENANIVRYGVMHRNTYLNSPQLLEKTYRLKEEKNI 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ+ G  GY E+AA G+VA +N+   + +   + F  T++ IG M + +        
Sbjct: 336 YFAGQMTGVEGYVESAASGIVAALNA-LYNTEDKEVVFP-TETMIGAMANYIVDNTS--- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLR 475
                       + +P NA+  +  P+  ++    E+ ++   + ++     +
Sbjct: 391 -----------KNFQPMNANFGIIKPLPERIKDKKEKYERYAKRSLEMLENFK 432


>gi|328672618|gb|AEB26865.1| glucose-inhibited division protein, degenerate [Anaplasma
           phagocytophilum HZ]
          Length = 249

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/195 (58%), Positives = 144/195 (73%), Gaps = 1/195 (0%)

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           I    PRYCPS+E+KI RF +   HQIFLEPEGL T+ VYPNGIST+ P E+Q + +R+I
Sbjct: 48  IDVMAPRYCPSVEEKIRRFPDHKSHQIFLEPEGLETNSVYPNGISTSCPIEVQLEMLRSI 107

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
            GLE+  ++R GY +EY++I+P+EL+ TLETKKI GLF AGQINGTTGYEEAA QG+VAG
Sbjct: 108 NGLEQAVMLRHGYTVEYNFIDPRELYHTLETKKIKGLFCAGQINGTTGYEEAAGQGIVAG 167

Query: 387 INSARK-SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445
            N+A       + +   R+DSYIGVMIDDL + G  EPYR+FTSRAEYR++LR DNAD  
Sbjct: 168 ANAALSLVQNQEPLVLKRSDSYIGVMIDDLVTLGTSEPYRLFTSRAEYRLTLRSDNADMC 227

Query: 446 LTPIGMKLGCIGERR 460
           LT IG     + + R
Sbjct: 228 LTEIGRAYSLVSQER 242


>gi|313892545|ref|ZP_07826132.1| tRNA:m(5)U-54 methyltransferase [Dialister microaerophilus UPII
           345-E]
 gi|313118942|gb|EFR42147.1| tRNA:m(5)U-54 methyltransferase [Dialister microaerophilus UPII
           345-E]
          Length = 431

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 166/489 (33%), Gaps = 76/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           +IVIG G AG EAA   AK      LI          H T   G + C+ ++        
Sbjct: 5   IIVIGAGLAGSEAAWQIAKNKIPVTLIEMRPKKNTPVHDTEYFGELVCSNSLRAASLQNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD                  G     DR  Y  A+  +I S 
Sbjct: 65  AGLLKEEMRRLDSLIIKTADEH------------QVPAGGALAVDRIGYAKAVTEKIKSN 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +++   E+     ++ +I             +T  LT G     +      K      
Sbjct: 113 PFIEIRYEEITEIPDDETVII------------ATGPLTEGKMAESIEQFCDGKGFYFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+                     SF      
Sbjct: 161 AAAPIVTKESLDMDVIYKASRYDRGEAAYLNCPM------------NEEEYNSFYEALCQ 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A+   D   +GP     + +   + G+     + 
Sbjct: 209 AETAEVHGFEKNK--VFEGCMPIEVMALRGKDTMRFGPMKPVGLINP--KTGKEPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE    +R G      YIN P+ L  
Sbjct: 265 LRQDNKEDTLYNIVGFQTHLKWGEQKRVFGMIPGLENAEFVRYGVMHRNTYINTPELLNE 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T+ETKK  GLF AGQ+ G  GY E+AA G+VA  ++  +    +   F R ++ IG + +
Sbjct: 325 TMETKKREGLFFAGQMTGVEGYIESAASGIVAAYSATARYLGKEPKPFPR-ETAIGSLCN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            ++                   + +P N +  L P       I E+R  +  K  +    
Sbjct: 384 YISHFE--------------GKNFQPMNINFGLMP-------ILEKRYPKKIKNEKIVER 422

Query: 474 LRSLLKSLV 482
               ++ L+
Sbjct: 423 ALQAIEKLI 431


>gi|315302914|ref|ZP_07873648.1| tRNA:M(5)U-54 methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628717|gb|EFR97116.1| tRNA:M(5)U-54 methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 434

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 167/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGIKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  L+ ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILESIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      + H+   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALAEEIKHLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E +   E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFKAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +E+     G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLENP--ETGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL AGIN+AR     + I F + ++ IG +  
Sbjct: 324 TYQLKSRDDLFFAGQMTGVEGYVESAASGLAAGINAARFVENKELILFPK-ETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELASKIRVKQERNEKLAERALSAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 GVAEQL 434


>gi|220929472|ref|YP_002506381.1| tRNA (uracil-5-)-methyltransferase Gid [Clostridium cellulolyticum
           H10]
 gi|219999800|gb|ACL76401.1| gid protein [Clostridium cellulolyticum H10]
          Length = 436

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 171/485 (35%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIG----GLG 54
           V VIG G AGCEAA   AK G +  L   K               + C+ ++        
Sbjct: 5   VNVIGAGLAGCEAAYQIAKRGINVTLYEMKPQKSTPAHHSADFAELVCSNSLRSDQLENA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + AD            K PA  G     DRE +   + R+I   
Sbjct: 65  AGLLKEELRVMDSLIMKAADET----------KVPA--GGALAVDREGFSQYITRQIKEN 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+++I  E+     E   I             +T  LT+      + +I          
Sbjct: 113 SNIEIIHTEMDKVPDENTTII------------ATGPLTSEPMFNYIKNITGKDYLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   F   R   G+   ++       +  + F D  +   +       
Sbjct: 161 AAAPIVTYESINMDKAFKAARYGKGSEDYINCPMT--KEEYEIFYDALVNAEAAEIKDFE 218

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
              +                  I+  A+   D   +GP     + D   R   +    + 
Sbjct: 219 KNMV------------FEGCMPIESMALRGKDTMRFGPLKPVGLVDA--RTNIKPFAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  N  +    G  T L    Q +  R IPGLE    +R G      YIN P+ L  
Sbjct: 265 LRQDNKNATLYNIVGFQTHLKWPEQKRVFRLIPGLENAEFVRYGVMHRNTYINSPRLLDN 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T   K    L+ AGQI G  GY E+ + G +AGIN+A +    + I F + ++ +G + +
Sbjct: 325 TYRLKSNENLYFAGQITGVEGYIESTSSGFIAGINAAAQCMGKERIIF-QPNTALGALSN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYN 472
            ++ + +               + +P N +      I   +  I +++++         N
Sbjct: 384 YISDESIR--------------NFQPMNINFGIFNGIDSSITSIRDKKRRNMEIAKNSVN 429

Query: 473 FLRSL 477
            ++ +
Sbjct: 430 NIKKI 434


>gi|312135861|ref|YP_004003199.1| gid protein [Caldicellulosiruptor owensensis OL]
 gi|311775912|gb|ADQ05399.1| gid protein [Caldicellulosiruptor owensensis OL]
          Length = 436

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 172/489 (35%), Gaps = 70/489 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +VIVIG G AG EAA    K G    L           HK  T   + C+ ++       
Sbjct: 2   EVIVIGAGLAGVEAANAITKFGLKVKLFEMKPKKFSPAHKMETFAELVCSNSLKSKLLTN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   A A                 G     DR  +   + ++I  
Sbjct: 62  ASGLLKEEMKVFGSLVIEAARAT------------SVEAGQALAVDRYKFSEYITQKIKQ 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            E ++VI  EV     +K ++              T  LTT   L  +  + + K     
Sbjct: 110 NELIEVIHEEVTEVPKDKIVVIC------------TGPLTTEGLLSDISKLCESKNLYFF 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      F   R   G+        I    T++++  ER        + I
Sbjct: 158 DAAAPIVLKDSIDFSKAFFASRYNKGSN-----DYINCPMTKEEY--ERFYWELVNAEVI 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +                  A    D   +GP     I D   + G+     +
Sbjct: 211 EVKDFEKDLLFEGCMPIE-------EMARRGIDTMRFGPLKPVGIIDP--KTGKMPYAVV 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L 
Sbjct: 262 QLRKDTQDGKLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPEVLT 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK   +F AGQI G  GY E+A+ G++AGIN+AR+    + +        IG +I
Sbjct: 322 KYLFLKKYPNIFFAGQITGVEGYLESASTGIIAGINAARQVLGKEPVSLPPNTC-IGALI 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           + +T+                    +P NA+  +  I  ++  I ++ +++     +  +
Sbjct: 381 EYITTPKKD---------------FQPMNANYGIISIDDEIAKIKDKEKRKLLIAQKSLD 425

Query: 473 FLRSLLKSL 481
             + +   +
Sbjct: 426 ICKEVANKI 434


>gi|292670829|ref|ZP_06604255.1| glucose-inhibited division protein [Selenomonas noxia ATCC 43541]
 gi|292647450|gb|EFF65422.1| glucose-inhibited division protein [Selenomonas noxia ATCC 43541]
          Length = 438

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/488 (23%), Positives = 174/488 (35%), Gaps = 67/488 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           VIV+G G AG EAA  AA+ GAS  L           HKT     + C+ ++ G G    
Sbjct: 4   VIVVGAGLAGSEAAWQAARAGASVELFEMRPLRRSPAHKTDGFAELVCSNSLRGAGLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ + ADA  +              G     DR  +   + + I+  
Sbjct: 64  VGVLKEEMRRLGSLIMQAADATAV------------PAGGALAVDRAEFSDYITQHIVQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+    +  + +  +++            LT G     +  +          
Sbjct: 112 PNISVHHAEITEIPSVDDSV--VIIASG--------PLTDGALSLAIRSLLGDAALYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  S  +  M   +   R   G PA      I     E+Q+  +         +K  
Sbjct: 162 AAAPLVSSSSINMTAVYRASRYGKGEPAY-----INCPMNEEQY--DAFWDALVHAEKAE 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E  I         ++       A    D   YGP     +E  +   GER    + 
Sbjct: 215 VHDFEKEIFFEGCMPVEVM-------AARGKDTLLYGPLKPIGLEHPV--TGERPHAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q    + IPGLE+   +R G      YIN P+ L P
Sbjct: 266 LRQDNTEGTIYNIVGFQTRLKWPEQKHVFQMIPGLEQAEFLRYGVMHRNTYINAPRHLRP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +      +F AGQ+ G  GY E+AA GL+AG+N+AR +     + F R   + G +  
Sbjct: 326 TFQLNVNECIFFAGQMTGVEGYVESAASGLMAGLNAARLARGESPLAFPRMTCH-GALAH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +TS                    +P N +  L P    L     + QK+     +  N 
Sbjct: 385 YITSCDSAH--------------FQPMNINFGLLPPLTDLPRRTRKPQKKLLLAERALNV 430

Query: 474 LRSLLKSL 481
           L    +S+
Sbjct: 431 LEHFHESM 438


>gi|39997642|ref|NP_953593.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter sulfurreducens
           PCA]
 gi|50400233|sp|Q74A44|TRMFO_GEOSL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39984534|gb|AAR35920.1| gid protein [Geobacter sulfurreducens PCA]
 gi|298506582|gb|ADI85305.1| tRNA (5-methyl-U54)-methylenetransferase/reductase [Geobacter
           sulfurreducens KN400]
          Length = 434

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 162/471 (34%), Gaps = 53/471 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V +IGGG AGCEAA   A  G    L   K            +  L   + +R     +A
Sbjct: 5   VTIIGGGLAGCEAAWQIAGRGVRVVLREMKPQRYSPAHHLSGLAELVCSNSLRGESLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +  A  +     +  + PA  G     DREL+   +   I     +++++ EV
Sbjct: 65  VGLLKEELRRAGSLIMAAADATRVPA--GGALAVDRELFSSYVTERIEGHPLIELVREEV 122

Query: 125 AGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                E  ++  S  +  D    R   +   +  F   +               +P  + 
Sbjct: 123 TELPAEGVLVIASGPLTSDALAERLKQITGDSLYFYDAI---------------APIVAA 167

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +      F   R   G         +    +E+++  ER +      +K+  R  E  +
Sbjct: 168 DSLDSDKVFRASRYGKGDGD----DYLNCPLSEEEY--ERFVDAVLAAEKVPARDFEKVV 221

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                     + E          +   +GP     + D   R G      + L  E    
Sbjct: 222 HFEGCMPVEEMAE-------RGRETLRFGPLKPVGLTDP--RTGREPHAVVQLRAENREG 272

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q +  R IPGLE    +R G      +IN P  L PT   K   
Sbjct: 273 TLFNLVGFQTKLTWPEQRRVFRMIPGLESAEFVRLGSMHRNTFINAPTLLEPTFRLKGDP 332

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F AGQI G  GY E+A  G +AGINSAR     D        + +G ++  +T+    
Sbjct: 333 RTFFAGQITGVEGYVESAGSGFLAGINSARLVRGEDPAVPPPVTA-LGALVAHITT---- 387

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
            P R F          +P N +  L P         +RR +   + + E +
Sbjct: 388 APARHF----------QPMNVNYGLFPPLEGKVKKKDRRGRLAERALAELD 428


>gi|94988640|ref|YP_596741.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS9429]
 gi|94992463|ref|YP_600562.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS2096]
 gi|94542148|gb|ABF32197.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS9429]
 gi|94545971|gb|ABF36018.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS2096]
          Length = 502

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 63  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 122

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 123 VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 170

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +DVI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 171 PLIDVIRDEITEIPDDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 221

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 222 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 262

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 263 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 322

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 323 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 382

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 383 DSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALVFPQTT 442

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 443 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 478

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 479 DKKERYEAIASR 490


>gi|313609073|gb|EFR84787.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes FSL F2-208]
          Length = 449

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 20  VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 79

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 80  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 127

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 128 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 174

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 175 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETXX 227

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 228 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 278

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 279 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 338

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +  
Sbjct: 339 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPA-ETAIGSLAH 397

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 398 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 443

Query: 473 FLRSLL 478
            +   L
Sbjct: 444 RVAEQL 449


>gi|47097537|ref|ZP_00235074.1| gid protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254828639|ref|ZP_05233326.1| gid protein [Listeria monocytogenes FSL N3-165]
 gi|254898559|ref|ZP_05258483.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           J0161]
 gi|254936277|ref|ZP_05267974.1| gid protein [Listeria monocytogenes F6900]
 gi|47014085|gb|EAL05081.1| gid protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601038|gb|EEW14363.1| gid protein [Listeria monocytogenes FSL N3-165]
 gi|258608866|gb|EEW21474.1| gid protein [Listeria monocytogenes F6900]
          Length = 434

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA       G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRMLDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + ++   
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALKAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 KVAEEL 434


>gi|322388011|ref|ZP_08061618.1| tRNA:M(5)U-54 methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141284|gb|EFX36782.1| tRNA:M(5)U-54 methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 444

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G S  L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGISVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            +I +   ++V++ E+    T+   +  +  +  D    +  ++    G +         
Sbjct: 108 EKIANHPLIEVVRDEITELTTDAITVVATGPLTSDALAEKIHSLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIVDVNTIDINKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR        
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGESEA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R       Y  +   
Sbjct: 416 EGERIRDKKARYEKIAER 433


>gi|50914228|ref|YP_060200.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10394]
 gi|50903302|gb|AAT87017.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10394]
          Length = 494

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 55  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 114

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 115 VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 162

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 163 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 214 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 254

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 255 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 314

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  +TIPGLE    +R G      Y+
Sbjct: 315 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQTIPGLENAEFVRYGVMHRNSYM 374

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 375 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 434

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 435 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 470

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 471 DKKERYEAIASR 482


>gi|329769609|ref|ZP_08261013.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella sanguinis M325]
 gi|328838364|gb|EGF87973.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella sanguinis M325]
          Length = 434

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 176/483 (36%), Gaps = 70/483 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           VIVIG G AG EAA   AK G +  L           HKT     + C+ ++        
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVNVDLYEMRPKKMTPAHKTQNFAELVCSNSLRANNITNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADA                 G     DR+ +   +   I + 
Sbjct: 65  VGLLKEEMRRLDSLIIKCADAT------------QVPSGGALAVDRDKFSEMITETIKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++VI+ E+     E   +  +V          +  + T T   G+         A  +
Sbjct: 113 PNINVIEEEITQIPKEDIPV--VVATGPLTSDALSQDIRTYTKQEGLYFYD----AAAPI 166

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+                +   F+F    IT
Sbjct: 167 IEKDSIDMNKVYLK-----SRYDKGEAAYLNCPM------------TKDEFFNFYNALIT 209

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                  +     E +       +  A        +GP     +ED   +  +R    + 
Sbjct: 210 AEAAP--LKEFEKEIYFEGCMPFEEMAKRGEKTLLFGPMKPVGLEDP--KTDKRPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  
Sbjct: 266 LRQDNSEGTLYNIVGFQTHLKWGEQKRIINLIPGLENANIVRYGVMHRNTYLNSPQLLEK 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K+   ++ AGQ+ G  GY E+AA G+VA +N+   + +   I F  T++ IG M +
Sbjct: 326 TYKLKEEKNIYFAGQMTGVEGYVESAASGIVAALNA-LYNQEDKQIIFP-TETMIGAMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +                    + +P NA+  +  P+  ++    E+ ++   + ++   
Sbjct: 384 YIVDNTS--------------KNFQPMNANFGIIKPLPERIKDKKEKYERYANRSLEILE 429

Query: 473 FLR 475
             +
Sbjct: 430 NFK 432


>gi|332311721|gb|EGJ24816.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           TrmFO [Listeria monocytogenes str. Scott A]
          Length = 449

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 20  VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 79

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 80  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 127

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 128 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 174

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 175 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 227

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 228 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 278

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 279 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 338

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +  
Sbjct: 339 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPA-ETAIGSLAH 397

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 398 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 443

Query: 473 FLRSLL 478
            +   L
Sbjct: 444 RVAEEL 449


>gi|205830461|sp|Q1JBP0|TRMFO_STRPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|205830464|sp|Q1JLM2|TRMFO_STRPC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +DVI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 117 PLIDVIRDEITEIPDDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALVFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|188586008|ref|YP_001917553.1| gid protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205830312|sp|B2A334|TRMFO_NATTJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|179350695|gb|ACB84965.1| gid protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 433

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 105/482 (21%), Positives = 175/482 (36%), Gaps = 69/482 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLGKG 56
           VIGGG AG EAA  AA+ G +  L           HKT  +  + C+ ++         G
Sbjct: 5   VIGGGLAGSEAAYQAAQQGVTVDLYEMRPVKTTAAHKTGELAELVCSNSLRAKSLENAAG 64

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+   D L+ +VAD                  G     DRE +   +   I +  N
Sbjct: 65  LLKEELRKFDSLIMKVADQV------------QVPAGGALAVDREAFSQKVTEYIENHPN 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +++I  EV   N  +  +             +T  LT+ +    +  +            
Sbjct: 113 INLITEEVTEINESQPTVI------------ATGPLTSTSLTERIQKLTGTDFLYFYDAA 160

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P  +  +      +   R   GTP  L         T++++ D       F  + I   
Sbjct: 161 APIVTYESINKNIAYWASRYGKGTPDYL-----NCPMTKEEYED-------FYQELINAE 208

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           ++   +     E        ++  A    D   +GP     +E+     GE     + L 
Sbjct: 209 KVP--LKSFEKEVVFEGCMPVEQMANRGKDTLVFGPLKPVGLENP--NTGEMPYAVVQLR 264

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T L    Q +  R IPGLE+   +R G      +IN PK L    
Sbjct: 265 KDNREGTLYNLVGFQTRLKWPEQRRVFRKIPGLEEAEFVRYGVMHRNTFINSPKVLTANY 324

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + ++  GLF AGQ+ G  GY E+ A GLVAG+N+ARK    + + F R ++ +G +   +
Sbjct: 325 QLRERPGLFFAGQVTGVEGYVESTASGLVAGLNAARKLQGNETLTFPR-ETALGALASYI 383

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
                               + +P N +  L P   K      ++QK+  + ++      
Sbjct: 384 VEASPD--------------NFQPMNINFGLLPSLEKKVPKKIKKQKQSERALKILEEFI 429

Query: 476 SL 477
             
Sbjct: 430 ER 431


>gi|78222113|ref|YP_383860.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter metallireducens
           GS-15]
 gi|123572455|sp|Q39X89|TRMFO_GEOMG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78193368|gb|ABB31135.1| Gid protein [Geobacter metallireducens GS-15]
          Length = 434

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 167/474 (35%), Gaps = 53/474 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           + +IGGG AGCEA   AA+ G    L   K            +  L   + +R     +A
Sbjct: 5   ITIIGGGLAGCEAVWQAAERGVRVTLHEMKPHAFSPAHHLAGLAELVCSNSLRGESLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +  A  +     +  + PA  G     DREL+   +   I +   +D+++GEV
Sbjct: 65  VGLLKEELRRAGSLIMAAADATRVPA--GGALAVDRELFSAFVTERIENHPLVDLMRGEV 122

Query: 125 AGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           A   +E  +I  +  +  D    R   +      F   +               +P  + 
Sbjct: 123 ADIPSEDIVIVATGPLTSDGLAERIRAITGPNLYFYDAI---------------APIVTA 167

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  M   F   R   G         +     ++++  E  +      +K+  R  E  +
Sbjct: 168 ESLDMTKVFRASRYGKGDGD----DYLNCPLNQEEY--EGFVDAILAAEKVPARDFEKVV 221

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                     + E          +   +GP     + D   R GE     + L  E    
Sbjct: 222 HFEGCMPVEEMAE-------RGRETLRFGPLKPVGLADP--RTGEEPHAVVQLRAENREG 272

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q +  R IPGLE    +R G      +IN P  L PT + K  +
Sbjct: 273 TMFNLVGFQTKLTYPEQRRIFRMIPGLENAEFVRLGSMHRNTFINAPALLAPTFQLKGDA 332

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+A  G +AG+N+AR     + +      + +G ++  +T+  V 
Sbjct: 333 RILFAGQITGVEGYVESAGSGFLAGVNAARLVRGEEPVVPPLATA-LGALVTHITNADVK 391

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
                           +P N +  L P         ERR K   + + E +   
Sbjct: 392 H--------------FQPMNVNYGLFPPLEGKVKKKERRGKLAERALAELDRWI 431


>gi|46907503|ref|YP_013892.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|254824663|ref|ZP_05229664.1| gid protein [Listeria monocytogenes FSL J1-194]
 gi|254932407|ref|ZP_05265766.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           HPB2262]
 gi|255520258|ref|ZP_05387495.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J1-175]
 gi|50400231|sp|Q720E5|TRMFO_LISMF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46880771|gb|AAT04069.1| gid protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583964|gb|EFF95996.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           HPB2262]
 gi|293593902|gb|EFG01663.1| gid protein [Listeria monocytogenes FSL J1-194]
 gi|328475120|gb|EGF45904.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes 220]
          Length = 434

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPA-ETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 RVAEEL 434


>gi|306827332|ref|ZP_07460619.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304430479|gb|EFM33501.1| tRNA:M(5)U-54 methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 494

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 55  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 114

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 115 VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 162

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 163 PLIEVIRDEITEIPNDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 214 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 254

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 255 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 314

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 315 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 374

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 375 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 434

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 435 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 470

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 471 DKKERYEAIASR 482


>gi|293374712|ref|ZP_06621020.1| tRNA:M(5)U-54 methyltransferase [Turicibacter sanguinis PC909]
 gi|325840601|ref|ZP_08167082.1| tRNA:m(5)U-54 methyltransferase [Turicibacter sp. HGF1]
 gi|292646626|gb|EFF64628.1| tRNA:M(5)U-54 methyltransferase [Turicibacter sanguinis PC909]
 gi|325490250|gb|EGC92583.1| tRNA:m(5)U-54 methyltransferase [Turicibacter sp. HGF1]
          Length = 432

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 177/483 (36%), Gaps = 73/483 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++   G    
Sbjct: 4   VNVIGAGLAGSEAAYQLAKRGIQVKLYEMRPVKNTPAHHTQNFAELVCSNSLRADGLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   AD          + K PA  G     DRE +   +   + + 
Sbjct: 64  VGVLKEEMRILDSLIMTAAD----------MHKVPA--GGALAVDREGFSGYITEFLSNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++VI+ E+        I+++  +  +++      +   G+F             A  +
Sbjct: 112 PNVEVIREELTELPEGPTIVATGPLTSDALSETIREMTGQGSFY--------FYDAAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S +    ++K  +D G          +   +    +E++F            + + 
Sbjct: 164 IEKDSINFDKVYLKSRYDKG----------EAAYLNCPMSEEEF--NAWHEALITAEVVP 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+     + 
Sbjct: 212 AKEFEKEVFFEGCMPIEVM-------AKRGRQTVLFGPMKPVGLEDP--KTGQTPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE   I+R G      +IN P  L  
Sbjct: 263 LRQDNAAGTLYNLVGFQTHLKWGEQKRIVQMIPGLENAEIVRYGVMHRNSFINSPVLLNA 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA G+VAGIN A+       I F R ++ +G M  
Sbjct: 323 TYQFKAREDLFFAGQLTGVEGYVESAASGMVAGINMAKYILGEALIEFPR-ETAMGSMAY 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                     +P NA+  L    + L    ++++K+     +    
Sbjct: 382 YITHTSQD--------------GFQPMNANFGLF---LDLPGRVKKKEKKALYAARAIEK 424

Query: 474 LRS 476
           ++ 
Sbjct: 425 IKE 427


>gi|254829967|ref|ZP_05234622.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           10403S]
 gi|255025704|ref|ZP_05297690.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J2-003]
 gi|284801661|ref|YP_003413526.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5578]
 gi|284994803|ref|YP_003416571.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5923]
 gi|284057223|gb|ADB68164.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5578]
 gi|284060270|gb|ADB71209.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           08-5923]
          Length = 434

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 103/486 (21%), Positives = 165/486 (33%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA       G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRMLDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 KVAEEL 434


>gi|323339882|ref|ZP_08080151.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus ruminis ATCC 25644]
 gi|323092755|gb|EFZ35358.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus ruminis ATCC 25644]
          Length = 436

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 104/484 (21%), Positives = 171/484 (35%), Gaps = 73/484 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG EAA   AK G    L           H T     + C  ++       G
Sbjct: 5   VNVVGAGLAGSEAAWQLAKRGIKVRLYEMRPKKNTPAHHTGNFAELVCTNSLRANQLTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD                  G     DR+ +   + + +   
Sbjct: 65  AGLLKEEMRQLDSLIMKAADE------------NSVPAGGALAVDRDAFSGEITKTLHEN 112

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           EN+ VI+ E+        +I +  +  D+        +   G +             A  
Sbjct: 113 ENITVIEEELKELPQGLTVIATGPLTSDSLADSIKEFMGDEGLYFYD---------AAAP 163

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +  S  +   ++K  +D G          D   +     E++F +      +  T ++
Sbjct: 164 IVEKASLDMDKVYLKSRYDRG----------DAAYLNCPMMEEEFENFYNELINAETAEL 213

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                       N          I+  A        +GP     +ED   R G+     +
Sbjct: 214 H--------AFENERFFE-GCMPIEQMASRGKKTMLFGPLKPVGLEDP--RTGKEPYAVV 262

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +    D+    G  T L    Q +    IPGLE    +R G      Y+ +P+ L 
Sbjct: 263 QLRQDNAVGDLYNIVGFQTHLKWGEQKRVFSMIPGLENAQFVRYGVMHRNTYLRSPEFLK 322

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            T +TKK S L  AGQ+ G  GY E+AA GL AG+N+AR   + D + F   ++ +G M 
Sbjct: 323 DTYQTKKRSDLLFAGQMTGVEGYVESAASGLYAGLNAARLIEEKDPLVFPV-ETMMGAMA 381

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                   + +P NA+  + P +  K+    ER      + +   
Sbjct: 382 HYITHASA--------------KNFQPINANFGIVPRLSQKIRDKRERNLALSKRALDIL 427

Query: 472 NFLR 475
           +  +
Sbjct: 428 DKYK 431


>gi|325978278|ref|YP_004287994.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178206|emb|CBZ48250.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 445

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 104/499 (20%), Positives = 168/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           M   SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ 
Sbjct: 1   MSQSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGKKATPQHKTDKFAELVCSNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A++  +              G     DR+ +   +
Sbjct: 60  GDSLTNAVGLLKEEMRRLDSVIMKAAESTRV------------PAGGALAVDRDGFSQMV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             E+ +   ++VI+ E+    T+   +  S  +  D    +   +    G +        
Sbjct: 108 TDEVTNHPLIEVIREEITEIPTDAITVIASGPLTSDALAEKIHELNGGDGFYFYD----- 162

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  S  +   ++K      R   G  A L+                +   
Sbjct: 163 ----AAAPIVDKNSIDMDKVYLK-----SRYDKGEAAYLNCPM------------TKEEF 201

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            +F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 202 MAFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYK 259

Query: 286 GERN------GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G RN         + L  +     +    G  T L    Q +  R IPGLE    +R G 
Sbjct: 260 GPRNGEFKTPYAVVQLRQDNAAGSLFNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGV 319

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  T++   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + 
Sbjct: 320 MHRNSYMDSPNLLTETFATRQNPDLFFAGQMTGVEGYVESAASGLVAGINAVRRFKGEEA 379

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F +T + IG +   +T                               P+ +  G + E
Sbjct: 380 VIFPQTTA-IGSLPHYITHAESK-----------------------HFQPMNVNFGIVKE 415

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 416 LDGPRIRDKKERYEKVAER 434


>gi|47093925|ref|ZP_00231664.1| gid protein [Listeria monocytogenes str. 4b H7858]
 gi|217964581|ref|YP_002350259.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes HCC23]
 gi|226223879|ref|YP_002757986.1| glucose inhibited division protein A [Listeria monocytogenes
           Clip81459]
 gi|290894170|ref|ZP_06557141.1| gid protein [Listeria monocytogenes FSL J2-071]
 gi|47017711|gb|EAL08505.1| gid protein [Listeria monocytogenes str. 4b H7858]
 gi|217333851|gb|ACK39645.1| tRNA:M(5)U-54 methyltransferase [Listeria monocytogenes HCC23]
 gi|225876341|emb|CAS05050.1| Putative glucose inhibited division protein A [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|290556300|gb|EFD89843.1| gid protein [Listeria monocytogenes FSL J2-071]
 gi|307570855|emb|CAR84034.1| gid protein [Listeria monocytogenes L99]
 gi|328468565|gb|EGF39565.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           1816]
          Length = 434

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 166/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F   ++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPA-ETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 RVAEQL 434


>gi|16803316|ref|NP_464801.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           EGD-e]
 gi|224499053|ref|ZP_03667402.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           Finland 1988]
 gi|224501779|ref|ZP_03670086.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           R2-561]
 gi|26006765|sp|Q8Y7K1|TRMFO_LISMO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|16410692|emb|CAC99354.1| gid [Listeria monocytogenes EGD-e]
          Length = 434

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 103/486 (21%), Positives = 165/486 (33%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA       G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRMLDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +  
Sbjct: 324 TYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFIQEKELVVFP-TETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIK 428

Query: 473 FLRSLL 478
            +   L
Sbjct: 429 KVAEEL 434


>gi|251782411|ref|YP_002996713.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391040|dbj|BAH81499.1| glucose inhibited division protein A [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 464

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 25  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 84

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 85  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 132

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +  T+    G +             A 
Sbjct: 133 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHTLNGDDGFYFYD---------AAA 183

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 184 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 224

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 225 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 284

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 285 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 344

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 345 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALVFPQTT 404

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 405 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 440

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 441 DKKERYEAIASR 452


>gi|25011009|ref|NP_735404.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           NEM316]
 gi|77413619|ref|ZP_00789805.1| gid protein [Streptococcus agalactiae 515]
 gi|33301134|sp|Q8E5M6|TRMFO_STRA3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|23095409|emb|CAD46614.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160328|gb|EAO71453.1| gid protein [Streptococcus agalactiae 515]
          Length = 444

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 109/498 (21%), Positives = 169/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYSEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            EI     ++VI+ E+     +   +  +  +  D+   +   +    G +         
Sbjct: 108 EEIHKHPLIEVIRDEITDIPGDAITVIATGPLTSDSLAAKIHELNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIVDKNTIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  T+K   LF AGQ+ G  GY E+AA GLVAGIN+AR+ N    +
Sbjct: 320 HRNSYMDSPNLLDQTFATRKNPNLFFAGQMTGVEGYVESAASGLVAGINAARRFNGESEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F +T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPQTTA-IGALPHYITHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIATR 433


>gi|94990516|ref|YP_598616.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10270]
 gi|94544024|gb|ABF34072.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10270]
          Length = 464

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 25  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 84

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 85  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 132

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 133 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 183

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 184 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 224

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 225 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 284

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 285 KTPYAVVQLRQDNTAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 344

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++++   LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 345 DSPNLLTETFQSRRNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 404

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 405 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGLRIR 440

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 441 DKKERYEAIASR 452


>gi|319745032|gb|EFV97360.1| tRNA:M(5)U-54 methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 444

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 108/498 (21%), Positives = 169/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ +  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMKNGEAHRV------------PAGGAMAVDREGYSKAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            EI     ++VI+ E+     +   +  +  +  D+   +   +    G +         
Sbjct: 108 EEIHKHPLIEVIRDEITDIPGDAITVIATGPLTSDSLAAKIHELNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIVDKNTIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  T+K   LF AGQ+ G  GY E+AA GLVAGIN+AR+ N    +
Sbjct: 320 HRNSYMDSPNLLNQTFATRKNPNLFFAGQMTGVEGYVESAASGLVAGINAARRFNGESEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F +T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPQTTA-IGALPHYITHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIATR 433


>gi|83589875|ref|YP_429884.1| tRNA (uracil-5-)-methyltransferase Gid [Moorella thermoacetica ATCC
           39073]
 gi|123524656|sp|Q2RJP8|TRMFO_MOOTA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|83572789|gb|ABC19341.1| gid protein [Moorella thermoacetica ATCC 39073]
          Length = 437

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 153/426 (35%), Gaps = 37/426 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           VI+IGGG AG EAA  AA+ G    L   +   +        +  L   + +R     +A
Sbjct: 5   VIIIGGGLAGSEAAWQAARRGMKVELWEMRPGKLTPAHSTGYLAELVCSNSLRADSLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +  A  +   V    + PA  G     DRE +   +   + +   + VI+ EV
Sbjct: 65  AGLLKAEMRQAGSLIMEVAAACRVPA--GKALAVDREEFASRVTAILEAHPGITVIREEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +I             +T  LT+   +R +      +        +P  +  +
Sbjct: 123 QAIPDNGPVII------------ATGPLTSPAMVRALKEFTGAEYLYFYDAAAPIVTAES 170

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G    L+      +K E     E         ++    + E  +  
Sbjct: 171 LDYSRIFKGSRYGRGEDDYLNCP---LNKEEY----EAFYQALVTAERHPRHEFEPEVVF 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++       A    D   +GP     + D     G      + L  +     +
Sbjct: 224 EGCMPVEVM-------AARGPDTLRFGPMRPVGLIDPA--TGREPYAVVQLRQDNAAGTL 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T+L    Q +  R IPGL +   +R G      Y+N P+ L PTL+ K    L
Sbjct: 275 YNLVGFQTSLKWGEQERVFRLIPGLREAEFVRFGVMHRNTYVNSPRLLQPTLQVKGYPWL 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS--KGVL 421
           FLAGQ+ G  GY E+AA GLVAG+N+ R +   + +      ++ G ++  +T       
Sbjct: 335 FLAGQLTGVEGYIESAACGLVAGVNATRFARGEEPLIPPPATAH-GALLHYITDPTHTPF 393

Query: 422 EPYRMF 427
           +P  + 
Sbjct: 394 QPMHIN 399


>gi|288905293|ref|YP_003430515.1| glucose-inhibited division protein [Streptococcus gallolyticus
           UCN34]
 gi|306831372|ref|ZP_07464531.1| tRNA:M(5)U-54 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288732019|emb|CBI13584.1| glucose-inhibited division protein [Streptococcus gallolyticus
           UCN34]
 gi|304426432|gb|EFM29545.1| tRNA:M(5)U-54 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 445

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 103/499 (20%), Positives = 167/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           M   SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ 
Sbjct: 1   MSQSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGKKATPQHKTDKFAELVCSNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A++  +              G     DR+ +   +
Sbjct: 60  GDSLTNAVGLLKEEMRRLDSVIMKAAESTRV------------PAGGALAVDRDGFSQMV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             E+ +   ++VI+ E+    T+   +  S  +  D    +   +    G +        
Sbjct: 108 TDEVTNHPLIEVIREEITEIPTDAITVIASGPLTSDALAEKIHELNGGDGFYFYD----- 162

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  S  +   ++K      R   G  A L+                +   
Sbjct: 163 ----AAAPIVDKNSIDMDKVYLK-----SRYDKGEAAYLNCPM------------TKEEF 201

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            +F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 202 MAFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYK 259

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  R IPGLE    +R G 
Sbjct: 260 GPRDGEFKTPYAVVQLRQDNAAGSLFNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGV 319

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  T++   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + 
Sbjct: 320 MHRNSYMDSPNLLTETFATRQNPDLFFAGQMTGVEGYVESAASGLVAGINAVRRFKGEEA 379

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F +T + IG +   +T                               P+ +  G + E
Sbjct: 380 VIFPQTTA-IGSLPHYITHAESK-----------------------HFQPMNVNFGIVKE 415

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 416 LDGPRIRDKKERYEKVAER 434


>gi|256851130|ref|ZP_05556519.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260660554|ref|ZP_05861469.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282932231|ref|ZP_06337675.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|297205995|ref|ZP_06923390.1| (FADH(2)-oxidizing) protein [Lactobacillus jensenii JV-V16]
 gi|256616192|gb|EEU21380.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548276|gb|EEX24251.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281303626|gb|EFA95784.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus jensenii 208-1]
 gi|297149121|gb|EFH29419.1| (FADH(2)-oxidizing) protein [Lactobacillus jensenii JV-V16]
          Length = 439

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 174/479 (36%), Gaps = 54/479 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIGGG AG EA+   AK G    L   +   +        +  L   + +R     +A
Sbjct: 5   VTVIGGGLAGSEASYQLAKRGVEVHLYEMRPIKMTPAHETGNLAELVCTNSMRSDQLTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  R  +  K PA  G     DREL+   +  E+   +NL +   E+
Sbjct: 65  VGLLKEEMRRLDSLVLRAADATKVPA--GGALAVDRELFSKYITDELAKFDNLHLHHEEI 122

Query: 125 AGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                +   I  +  +  D+       +   +GT     +H             +P  + 
Sbjct: 123 TKIPNDGITIIATGPLTSDDL---AKQIQEFSGT---SSLHFFDAA--------APIVAS 168

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  M   +   R   G  A L+         +KQ          F  + +     E   
Sbjct: 169 DSINMDIVYKKSRYDRGEAAYLNCP------MDKQQFTR------FWEELVKADTAELHG 216

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
              +          I+  A        +GP     +ED   + G+     + L  +   +
Sbjct: 217 FEKDE--VFEGCMPIEVMAARGEKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAS 272

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKIS 361
            +    G  T L    Q +    IPGLE    +R G      Y+ +P  L  T E KK +
Sbjct: 273 SMYNLVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLNATYEAKKQA 332

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
           GLF AGQ+ G  GY E+A  GLVAGIN++R +  LD   F   ++ +G M + +T+    
Sbjct: 333 GLFFAGQMTGVEGYVESAGSGLVAGINASRLARGLDLATFPV-ETALGSMANYITTTSSK 391

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                           +P NA   L  P+  K+    ER+Q    + +++       +K
Sbjct: 392 H--------------FQPMNASFSLIPPLEKKIRNKRERKQMISERGLEKLAEFAEEMK 436


>gi|227879130|ref|ZP_03997014.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843163|ref|ZP_05548651.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|256850238|ref|ZP_05555667.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus crispatus
           MV-1A-US]
 gi|262046370|ref|ZP_06019332.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus MV-3A-US]
 gi|293380239|ref|ZP_06626320.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus 214-1]
 gi|312977298|ref|ZP_07789046.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus CTV-05]
 gi|227861287|gb|EEJ68922.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614583|gb|EEU19784.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|256712875|gb|EEU27867.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus crispatus
           MV-1A-US]
 gi|260573241|gb|EEX29799.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus crispatus MV-3A-US]
 gi|290923206|gb|EFE00128.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus 214-1]
 gi|310895729|gb|EFQ44795.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus crispatus CTV-05]
          Length = 438

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 175/489 (35%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EN+ V + EV     +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LENVTVHEEEVTEIPKDGITIIATGPLTSDAL---AGQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  MK  +   R   G  A L         T++Q+         F  +
Sbjct: 163 -----APIVAADSIDMKIVYKKSRYDRGEAAYL-----NCPMTKEQY-------EKFSQE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N +        I+  A        +GP     +ED     G+    
Sbjct: 206 LINAETAQLH-GFENSDVFE-GCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGKTPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P+ 
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPEV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E K+  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   D + F + D+ +G 
Sbjct: 322 LTASYEAKEQPGLFFAGQMTGVEGYVESAGSGLVAGINAAREAMGKDTVAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G K+    ER +K   + +
Sbjct: 381 MANYIT-----------TTSAKH---FQPMNASFALLPPLEGKKIRKKRERHEKVSERGL 426

Query: 469 QEYNFLRSL 477
              +  ++ 
Sbjct: 427 ASLDEFKTE 435


>gi|315648143|ref|ZP_07901244.1| gid protein [Paenibacillus vortex V453]
 gi|315276789|gb|EFU40132.1| gid protein [Paenibacillus vortex V453]
          Length = 442

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 169/490 (34%), Gaps = 79/490 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +  S  V VIG G AG EAA   A  G    L           H T     + C+ ++  
Sbjct: 1   MTDSQRVTVIGAGLAGSEAAWQIASRGVPVTLYEMRPVVKTPAHHTDKFAELVCSNSLRA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            G     G L  E+  L+ L+   AD            +     G     DR+ +   + 
Sbjct: 61  NGLTNAVGVLKEEMRMLNSLVIGSAD------------RNSVPAGGALAVDRDGFSGEIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             + +   ++V+  E+     E  ++             +T  LT+      +  +    
Sbjct: 109 ETLHNHPLIEVVNEEIQHIPEEGIVVI------------ATGPLTSPALSSQIRELMGED 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P     +  M   +   R   G  A L         TE++F  +       
Sbjct: 157 YFYFYDAAAPIVEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--DAFYDALI 209

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +    ++ E  I         ++M+              +GP     + +     GE 
Sbjct: 210 NAEVAQLKEFEKEIYFEGCMPIEVMMK-------RGKQTALFGPMKPVGLVNP--HTGEL 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q + +  IPGLE   I+R G      ++N 
Sbjct: 261 PHAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVLSMIPGLENAEIVRYGVMHRNTFVNS 320

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           PK L  T + K    L+LAGQ+ G  GY E+AA GL+AGIN+AR +   + + F + +S 
Sbjct: 321 PKLLEQTYQVKTRPNLYLAGQMTGVEGYVESAASGLIAGINAARAAQGQEGVVFPQ-ESA 379

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG M   +T                   + +P NA+  L P            +KR    
Sbjct: 380 IGSMAYYITHADPD--------------NFQPMNANFGLLP----------NLEKRIRNK 415

Query: 468 IQEYNFLRSL 477
            ++ + L + 
Sbjct: 416 KEKNDALANR 425


>gi|73919636|sp|Q5XC46|TRMFO_STRP6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  +TIPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQTIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|205830465|sp|Q1JGS2|TRMFO_STRPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNTAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++++   LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRRNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGLRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|300361599|ref|ZP_07057776.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300354218|gb|EFJ70089.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 438

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 175/488 (35%), Gaps = 70/488 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +V VIGGG AG EAA   AK G    L           H+T+    + C  ++       
Sbjct: 4   NVTVIGGGLAGSEAAWQLAKRGIEVDLYEMRPKKNTPAHETANFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD   +              G     DR+ +   + + +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADETAV------------PAGGALAVDRDKFSSVVTKTLKD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V + E+               +D   I   T  LT+ T    +            
Sbjct: 112 LPNVRVHEEEITKIP-----------KDGITIIA-TGPLTSDTLAEQIKEFCGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +      +   R   G  A L+                +   ++F  + +
Sbjct: 160 DAAAPIVAASSIDRDIVYKKSRYDKGEAAYLNCPM------------TKEEFYNFYKNLV 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +             +        I+  A        +GP     +ED   + G+     +
Sbjct: 208 SAETATLHGF--EDKNVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +   + +    G  T L    Q +    IPGLE    +R G      YI +P+ L 
Sbjct: 264 QLRQDNAASTMYNIVGFQTHLKYGEQKRVFSMIPGLENAKFVRYGKMHRNTYIASPEVLN 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              E +K +GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F ++ + +G M 
Sbjct: 324 ANYEARKQAGLFFAGQMTGVEGYVESAGSGLVAGINAAREAIGEETLVFPKSTA-LGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-GMKLGCIGERRQKRFAKYIQEY 471
             +T           T+ A++    +P NA   L P    K+    ER  +   + +++ 
Sbjct: 383 HYIT-----------TTSAKH---FQPMNASYALLPKLDYKVRNKQERHLEISKRALKDL 428

Query: 472 NFLRSLLK 479
              +   K
Sbjct: 429 EAFKEEKK 436


>gi|51245821|ref|YP_065705.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfotalea psychrophila
           LSv54]
 gi|81641897|sp|Q6ALS7|TRMFO_DESPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|50876858|emb|CAG36698.1| probable glucose-inhibited division protein [Desulfotalea
           psychrophila LSv54]
          Length = 444

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/479 (23%), Positives = 173/479 (36%), Gaps = 50/479 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N    VI+IGGG AG EAA  AA  G    L+  K         +P +G L   + +R 
Sbjct: 1   MNNMNKVIIIGGGLAGSEAAWQAANRGCQVELVDMKPEKYSPAHSSPLLGELVCSNSLRS 60

Query: 62  ID---ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            D   A+  +   +     +   V +    PA  G     DR+ +  A+   + S  N+ 
Sbjct: 61  NDPTSAVGLMKREMRFFNSLIMDVADSTAVPA--GKALAVDRDKFAEAITARLESHPNIS 118

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +   EV                D+  I   T  LT   F   +  +      A     +P
Sbjct: 119 ISHREVTAVPEP---------ADHPTIIA-TGPLTAEDFAESLAELTGRDRLAFYDAIAP 168

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                +  M   +   R   G    L+      ++ E     ER I      D +  +  
Sbjct: 169 ILDSESLNMDIVYCKSRYDDGPGDYLNCPM---NREEY----ERFISELASADYMPLKDF 221

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           E            +I            D   +GP     + D   R G+     + L  E
Sbjct: 222 EDAKYFEGCLPVEVICS-------RGVDTLRFGPMKPVGLPDP--RTGQDPYAVVQLRME 272

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                     G  T +    Q +  R IPG+E V  +R G      +I  P+ L  TL+ 
Sbjct: 273 NAEGSTYNMVGFQTKMTYPEQKRIFRMIPGMENVEFVRLGSIHRNTFICAPELLADTLQI 332

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK   L LAGQ++G  GY E+AA GL+AGIN+AR++   + +     +  +G M+  LT 
Sbjct: 333 KKRPDLLLAGQLSGVEGYIESAAMGLLAGINAARRAMG-EELVSPPAEMALGAMVGHLTK 391

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTP---IGMKLGCIGERRQKRFAKYIQEYNF 473
                             + +P N +  L P     +     GE+R +  A  ++ +N 
Sbjct: 392 SAA--------------KNFQPSNVNFGLFPAWEKKVPKRFRGEKRAEASALALEVWNE 436


>gi|317495292|ref|ZP_07953662.1| m(5)U-54 methyltransferase [Gemella moribillum M424]
 gi|316914714|gb|EFV36190.1| m(5)U-54 methyltransferase [Gemella moribillum M424]
          Length = 434

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 165/462 (35%), Gaps = 70/462 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           +IVIG G AG EAA   AK G    L           HKT     + C+ ++        
Sbjct: 5   IIVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHKTQNFAELVCSNSLRANNITNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADA                 G     DR+ +   + + I + 
Sbjct: 65  VGLLKEEMRMLDSLIMKCADAT------------QVPAGGALAVDRDKFSEMITKTIKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++VI+ E++     +N +             +T  LT+ +    +    K        
Sbjct: 113 PNINVIEEELSEIPKGENPVI-----------VATGPLTSDSLSENIKEYTKQDGLYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+                +   F+F  + IT
Sbjct: 162 AAAPIIEKDSIDMNKVYLKSRYDKGEAAYLNCPM------------TKDEFFAFYNELIT 209

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                  +     E +       +  A        +GP     +ED   +  +R    + 
Sbjct: 210 AEAAP--LKEFEKEIYFEGCMPFEEMAKRGEKTLLFGPMKPVGLEDP--KTDKRPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + I  IPGLE  +I+R G      Y+N P+ L  
Sbjct: 266 LRQDNSEGTLYNIVGFQTHLKWGEQKRIINMIPGLENASIVRYGVMHRNTYLNSPQLLEK 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T   K    ++ AGQ+ G  GY E+AA G+VA +N+   +   + +    T++ IG M +
Sbjct: 326 TYRLKDEENIYFAGQMTGVEGYVESAASGIVAALNALYNTEGKEVVFP--TETMIGAMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLG 454
            +                    + +P NA+  +  P+  K+ 
Sbjct: 384 YIVDNTS--------------KNFQPMNANFGIIKPLPEKIR 411


>gi|15675145|ref|NP_269319.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes M1
           GAS]
 gi|71910706|ref|YP_282256.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS5005]
 gi|26006773|sp|Q99ZL9|TRMFO_STRP1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13622306|gb|AAK34040.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           M1 GAS]
 gi|71853488|gb|AAZ51511.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS5005]
          Length = 448

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 168/492 (34%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+GE+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRGEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|322382310|ref|ZP_08056217.1| tRNA (uracil-5-)-methyltransferase Gid-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153663|gb|EFX46038.1| tRNA (uracil-5-)-methyltransferase Gid-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 442

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 157/455 (34%), Gaps = 70/455 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L   +               + C+ ++        
Sbjct: 7   VTVIGAGLAGSEAAWQIASSGVPVTLYEMRPVRKTPAHITDKFAELVCSNSLRANSLTNA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E+  +  L+   AD   +              G     DR+ +   +   + + 
Sbjct: 67  VGVLKQEMREMGSLIMSSADKHAV------------PAGGALAVDRDGFSGEITSTLHNH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V   E+        ++             ++  LT+      +  +   +      
Sbjct: 115 PLIEVRNEELQEIPDGITVV-------------ASGPLTSPGLSERLRSLMGEEYLYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +         +   
Sbjct: 162 AAAPIVEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--DAFHEALTEAEVAP 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  I         ++M+  K +A+Y       GP     + +     G+     + 
Sbjct: 215 IKDFEKEIYFEGCMPIEVMMKRGKQTALY-------GPMKPVGLINP--HTGKLPYAVVQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE    +R G      +IN PK L P
Sbjct: 266 LRQDNAAGTLYNLVGFQTHLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSPKLLEP 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +    C+ F R ++ +G M  
Sbjct: 326 TYQFKHRPSLFFAGQMTGVEGYVESAASGLIAGINAARLAKGESCLTFPR-ETALGGMAH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
            +T+                    +P NA+  L P
Sbjct: 385 YITTADSKH--------------FQPMNANFGLFP 405


>gi|319939101|ref|ZP_08013465.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus anginosus 1_2_62CV]
 gi|319812151|gb|EFW08417.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus anginosus 1_2_62CV]
          Length = 444

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/498 (21%), Positives = 176/498 (35%), Gaps = 76/498 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R A+A  +              G     DR+ +   + 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRAAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            E+ +   ++VI+ E+     +   +             +T  LT+ T    +  +    
Sbjct: 108 DEVTNHPLIEVIREEITKIPDDTITVI------------ATGPLTSDTLAEKIHALNGGA 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P   +    M+  +   R   G  A L+                +    +F
Sbjct: 156 GFYFYDAAAPIVDVNTIDMEKVYLKSRYDKGEAAYLNAPM------------TKNEFMAF 203

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +   +    +     E +      I+  A        YGP     +E      G R
Sbjct: 204 HDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  R IPGLE    +R G    
Sbjct: 262 DGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T ++KK   +F AGQ+ G  GY E+AA GLVAGIN+ R  N  + + F
Sbjct: 322 NSYMDSPNLLTQTFQSKKQENIFFAGQMTGVEGYVESAASGLVAGINATRLFNGEEALVF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGER 459
             T + IG +   +T                     +P N +  +     G ++    ER
Sbjct: 382 PETTA-IGSLPHYITHADSKH--------------FQPMNVNFGIIKELDGPRIRDKKER 426

Query: 460 RQKRFAKYIQEYNFLRSL 477
            +K   + +Q     ++L
Sbjct: 427 YEKIAERALQAIENYQNL 444


>gi|326204630|ref|ZP_08194486.1| gid protein [Clostridium papyrosolvens DSM 2782]
 gi|325985197|gb|EGD46037.1| gid protein [Clostridium papyrosolvens DSM 2782]
          Length = 436

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 170/474 (35%), Gaps = 50/474 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AGCEAA   AK G +  L   K         +     L   + +R     +A
Sbjct: 5   VNVIGAGLAGCEAAYQLAKRGINVTLYEMKPEKSSPAHHSNDFAELVCSNSLRSAQLENA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  R  +  + PA  G     DRE +   + +EI    N++++  E+
Sbjct: 65  VGLLKEELRTMDSLIMRAADETRVPA--GGALAVDREGFSQYITKEIKENSNIEIVNKEM 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   I             +T  LT+      +  I   +        +P  +  +
Sbjct: 123 DTVPDENITII------------ATGPLTSEPMFNYIKGITGEEYLHFFDAAAPIVTFDS 170

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G+   ++      ++ E +   + LI       K   + +      
Sbjct: 171 INMNKAFRAARYGKGSEDYINCPM---NREEYEVFYDALINAEAAEVKDFEKNM------ 221

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                       I+  A    D   +GP     + D+  R   ++   + L  +  N  +
Sbjct: 222 -----VFEGCMPIESMAYRGKDTMRFGPLKPVGLVDE--RTNVKSYAVVQLRQDNKNATL 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE    +R G      YIN PK L  T   K    +
Sbjct: 275 YNIVGFQTHLKWPEQKRVFSLIPGLENAEFVRYGVMHRNTYINSPKLLDNTYRLKNNENM 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQI G  GY E+ + G VAGIN+A +    + I F   ++ IG + + ++   +   
Sbjct: 335 YFAGQITGVEGYIESTSSGFVAGINAAAQCRGGERIVFPP-NTAIGALSNYISDGSIR-- 391

Query: 424 YRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                       + +P N +    + I   +  I +++++         NF++ 
Sbjct: 392 ------------NFQPMNVNFGIFSGIDEMIVSIRDKKKRNMEIAKNSVNFVKK 433


>gi|315640712|ref|ZP_07895814.1| tRNA:M(5)U-54 methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483467|gb|EFU73961.1| tRNA:M(5)U-54 methyltransferase [Enterococcus italicus DSM 15952]
          Length = 464

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/496 (21%), Positives = 174/496 (35%), Gaps = 72/496 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    L           H T+    + C+ ++ G      
Sbjct: 18  VNVIGAGLAGSEAAWQVAQAGVPVRLYEMRPVKSTEAHHTANFAELVCSNSLRGNSLANA 77

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   AD   +              G     DR+ +   + + +   
Sbjct: 78  VGVLKEEMRRLHSVVITSADQTAV------------PAGGALAVDRDSFSELITKRVKDH 125

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI  E+        II             +T  LT+    + +             
Sbjct: 126 PLVTVISEEITEIPAGLTII-------------ATGPLTSAPLAQAIREFNGSDGFYFYD 172

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       K E +   E LI      +   
Sbjct: 173 AAAPIIDKNSIDMNKVYLKSRYDKGEAAYLNCPM---TKEEFEAFREELIHA----EVAP 225

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E            ++       A        +GP     +ED   + G+R    I 
Sbjct: 226 LKEFEKEKYFEGCMPIEVM-------ANRGPKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 276

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE   I+R G      ++N P+ L  
Sbjct: 277 LRQDNAVASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEIVRYGVMHRNSFMNAPELLQQ 336

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +++    LF AGQ+ G  GY E+AA GLVAG+N+AR +   + I F + ++ IG M  
Sbjct: 337 TYQSRLRDDLFFAGQMTGVEGYVESAASGLVAGMNAARLAKGQEPIIFPQ-ETAIGSMAY 395

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                     +P NA+  L P   +   I +++ +  A   +    
Sbjct: 396 YITHAS--------------GKHFQPMNANFGLFPELPER--IRDKKGRYEALANRALTA 439

Query: 474 LRSLLKSLVLTSKNLS 489
           L  + K +  T+   +
Sbjct: 440 LEEVTKEITATNPTWA 455


>gi|157150106|ref|YP_001450480.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189040812|sp|A8AXH0|TRMFO_STRGC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157074900|gb|ABV09583.1| Glucose inhibited division protein A [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 444

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 167/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPNDDITVIATGPLTSDALAEKIHALNGGNGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKIYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|139473747|ref|YP_001128463.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes str.
           Manfredo]
 gi|166989569|sp|A2REF7|TRMFO_STRPG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|134271994|emb|CAM30232.1| protein Gid homolog [Streptococcus pyogenes str. Manfredo]
          Length = 448

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 117 PLIEVIRDEITEIPNDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|71903531|ref|YP_280334.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS6180]
 gi|71802626|gb|AAX71979.1| glucose inhibited division protein A [Streptococcus pyogenes
           MGAS6180]
          Length = 464

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 165/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 25  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 84

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 85  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 132

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 133 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 183

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F      
Sbjct: 184 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----D 224

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 225 ALTNAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 284

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 285 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 344

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAG N+AR   + + + F +T 
Sbjct: 345 DSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGTNAARLFKREEALVFPQTT 404

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 405 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 440

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 441 DKKERYEAIASR 452


>gi|324994465|gb|EGC26378.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK678]
          Length = 444

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTEDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHVLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y+N P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMNSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             +R     + Y  +   
Sbjct: 416 DGRRIRDKKERYEKIAER 433


>gi|205830455|sp|Q48TI1|TRMFO_STRPM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 165/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F      
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----D 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTNAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAG N+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGTNAARLFKREEALVFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|19746111|ref|NP_607247.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS8232]
 gi|26006762|sp|Q8P106|TRMFO_STRP8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|19748285|gb|AAL97746.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           MGAS8232]
          Length = 448

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 117 PLIEVIRDEITEIPNDAITVIATGPLTSDALSEKIHAVNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|295692918|ref|YP_003601528.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Lactobacillus crispatus ST1]
 gi|295031024|emb|CBL50503.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus crispatus ST1]
          Length = 438

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 108/489 (22%), Positives = 174/489 (35%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EN+ V + EV     +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LENVTVHEEEVTEIPKDGITIIATGPLTSDAL---AGQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L         T++Q+         F  +
Sbjct: 163 -----APIVAADSIDMNIVYKKSRYDRGEAAYL-----NCPMTKEQY-------EKFSQE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N +        I+  A        +GP     +ED     G+    
Sbjct: 206 LINAETAQLH-GFENSDVFE-GCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGKTPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P+ 
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPEV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E K+  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   D + F + D+ +G 
Sbjct: 322 LTASYEAKEQPGLFFAGQMTGVEGYVESAGSGLVAGINAAREAMGKDTVAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G K+    ER +K   + +
Sbjct: 381 MTNYIT-----------TTSAKH---FQPMNASFALLPPLEGKKIRKKRERHEKVSERGL 426

Query: 469 QEYNFLRSL 477
              +  ++ 
Sbjct: 427 ASLDEFKTE 435


>gi|206900653|ref|YP_002251234.1| gid protein [Dictyoglomus thermophilum H-6-12]
 gi|254789171|sp|B5YFC6|TRMFO_DICT6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|206739756|gb|ACI18814.1| gid protein [Dictyoglomus thermophilum H-6-12]
          Length = 439

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/485 (24%), Positives = 177/485 (36%), Gaps = 69/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IGGG AG EAA   AK      +           HKT  +  + C+ +         
Sbjct: 4   VKIIGGGLAGSEAAWQLAKRKIPVEIYEMRPVVTTPVHKTEYLAELVCSNSFKSTELTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVA+   +              G     DREL+   +Q  +L  
Sbjct: 64  SGLLKEEMKKLDSLLLRVAEETRV------------PAGVALAVDRELFAKRVQEILLES 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ EV     E  +I             +T  LT+  F   +I I          
Sbjct: 112 PYVTVIREEVKKIPEEGIVIV------------ATGPLTSSDFAEHLIEILDTDSLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +   +  F   R   G  A L+      ++ E+           F+ + + 
Sbjct: 160 AVSPIIYADSINYEKVFSASRYGKGEEAYLNCPMTK-EEYER-----------FVEELVN 207

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
              +E        E        I+  A    D   YGP     + D   + G+     + 
Sbjct: 208 AETVESH--YPGEEKFFEGCLPIEVLARRGIDTLRYGPMKPVGLIDP--KTGKEPYAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L PE +   +    G  T L  + Q +  R IPGLE     R G      Y   PK L P
Sbjct: 264 LRPENIQKTLYSMVGFQTRLKFQEQRRIFRMIPGLENAEFARYGVMHRNTYFYAPKFLKP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+  K   +F AGQ+ G  GY E+AA G+VAGIN+AR       I    T + IG +I 
Sbjct: 324 TLQFIKNERVFFAGQLIGVEGYMESAAMGIVAGINAARLYKGKPLIILPPT-TMIGALIS 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+K  +                +P NA+   L P+   +     R +    + +++ +
Sbjct: 383 YVTTKVPV-------------KQFQPMNANWGILLPLERPVKDKKLRNRLLAERALRDLD 429

Query: 473 FLRSL 477
            +   
Sbjct: 430 DVIRR 434


>gi|325570944|ref|ZP_08146563.1| tRNA:M(5)U-54 methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156270|gb|EGC68454.1| tRNA:M(5)U-54 methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 433

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 166/487 (34%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           ++ VIG G AG EAA  AA+ G +  L           H T+    + C  ++ G     
Sbjct: 3   EINVIGAGLAGSEAAWQAAQAGVAVKLYEMRPKKSTEAHHTNNFAELVCTNSLRGNNLTN 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD ++   AD   +              G     DR+ +   + + +  
Sbjct: 63  AVGVLKEEMRRLDSVIITSADKTAV------------PAGGALAVDRDDFSELVTKRVKE 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + VI+ E+        +I             +T  LT+    + +      +     
Sbjct: 111 HPLVTVIEEEITEIPDGITVI-------------ATGPLTSEPLSKAIQAFNGSEGFYFY 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P        M   +   R   G  A L+                    ++F    +
Sbjct: 158 DAAAPIVDKSTINMDKVYLKSRYDKGEAAYLNCPM------------NEEEFYAFREALV 205

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                   +     E        I+  A        +GP     +ED   + G+R    I
Sbjct: 206 NAEVAP--LKEFEKEKFFEGCMPIEVMAGRGPKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE+   +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEEAEFVRYGVMHRNSFMNSPELLQ 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+A+ +     I   +  + IG M 
Sbjct: 322 QTYQSKKREDLFFAGQMTGVEGYVESAASGLMAGINAAKLAKGEAPIIMPQETT-IGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + +   
Sbjct: 381 YYITHAE--------------GKHFQPMNANFGLLPELPERIRDKKSRYEALANRALAAL 426

Query: 472 NFLRSLL 478
              +  L
Sbjct: 427 EEAKEQL 433


>gi|77405695|ref|ZP_00782782.1| gid protein [Streptococcus agalactiae H36B]
 gi|77408608|ref|ZP_00785343.1| gid protein [Streptococcus agalactiae COH1]
 gi|77172801|gb|EAO75935.1| gid protein [Streptococcus agalactiae COH1]
 gi|77175691|gb|EAO78473.1| gid protein [Streptococcus agalactiae H36B]
          Length = 444

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 108/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYSEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            EI     ++VI+ E+     +   +  +  +  D+   +   +    G +         
Sbjct: 108 EEIHKHPLIEVIRDEITDIPGDAITVIATGPLTSDSLAAKIHELNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIVDKNTIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  T+K   LF AGQ+ G  GY E+AA GLVAGIN+ R+ N    +
Sbjct: 320 HRNSYMDSPNLLNQTFATRKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFNGESEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F +T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPQTTA-IGALPHYITHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIATR 433


>gi|315222964|ref|ZP_07864843.1| tRNA:M(5)U-54 methyltransferase [Streptococcus anginosus F0211]
 gi|315187914|gb|EFU21650.1| tRNA:M(5)U-54 methyltransferase [Streptococcus anginosus F0211]
          Length = 455

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/497 (21%), Positives = 172/497 (34%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ 
Sbjct: 11  LLSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLR 69

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ R A+A  +              G     DR+ +   +
Sbjct: 70  GDSLTNAVGLLKEEMRRLDSIIMRAAEATRV------------PAGGALAVDRDGFSQMV 117

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             E+ +   ++VI+ E+     +   +             +T  LT+ T    +  +   
Sbjct: 118 TDEVTNHPLIEVIREEITKIPDDTITVI------------ATGPLTSDTLAEKIHELNGG 165

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P   +    M+  +   R   G  A L+                +    +
Sbjct: 166 AGFYFYDAAAPIVDVNTIDMEKVYLKSRYDKGEAAYLNAPM------------TKSEFMA 213

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    +     E +      I+  A        YGP     +E      G 
Sbjct: 214 FHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKGP 271

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  R IPGLE    +R G   
Sbjct: 272 RDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMH 331

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T ++KK   +F AGQ+ G  GY E+AA GLVAGIN+AR  N  + + 
Sbjct: 332 RNSYMDSPNLLTQTFQSKKQENIFFAGQMTGVEGYVESAASGLVAGINAARLFNGEEALV 391

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F    + IG +   +T                     R D+      P+ +  G I E  
Sbjct: 392 FPEATA-IGSLPHYIT---------------------RADSK--HFQPMNVNFGIIKELD 427

Query: 461 QKRFAKYIQEYNFLRSL 477
             R     + Y  +   
Sbjct: 428 GPRIRDKKERYEKIAER 444


>gi|94994438|ref|YP_602536.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS10750]
 gi|94547946|gb|ABF37992.1| Glucose inhibited division protein A [Streptococcus pyogenes
           MGAS10750]
          Length = 464

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 25  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 84

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 85  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 132

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 133 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 183

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+                +    +F    
Sbjct: 184 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPM------------TKEEFMAFHDAL 226

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
            T  +    +     E +      I+  A        YGP     +E      G R    
Sbjct: 227 TTAEEAP--LNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 284

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 285 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 344

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 345 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 404

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 405 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 440

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 441 DKKERYAAIASR 452


>gi|327462204|gb|EGF08531.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1]
 gi|327474224|gb|EGF19631.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK408]
 gi|327489691|gb|EGF21482.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1058]
          Length = 444

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           +F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 NFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK+  LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKLPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|325687463|gb|EGD29484.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK72]
          Length = 444

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G S  L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGISVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E+
Sbjct: 380 VFPETTA-IGSLAHYVTHADSK-----------------------HFQPMNVNFGIIKEQ 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|301300761|ref|ZP_07206945.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851611|gb|EFK79311.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 436

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 169/485 (34%), Gaps = 71/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L           H T     + C  ++        
Sbjct: 5   VNVIGAGLAGSEAAWQIANQGVKVRLYEMRPQKLTPAHHTENFAELVCTNSLRANRLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+   + ++   AD                  G     DRE +   +  ++ + 
Sbjct: 65  AGLLKEEMRTFNSIIMESADKH------------SVPAGGALAVDRETFSKEVTEKLHNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+++I  E+        +I++  +  +++     +   TG+   G+         A  +
Sbjct: 113 PNVEIINEEIDEIPEGLTVIATGPLTSDAL--AKDITKFTGS--DGLFFFD----AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +   ++K      R   G  A L+       K E       LI      +   
Sbjct: 165 LEKSSLDMDKVYLK-----SRYDKGEAAYLNAPM---TKDEFYNFYNELIKA----ETAE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E             I       A        YGP     +ED   R G+     + 
Sbjct: 213 LHDFEDDKFFEGCMPIEEI-------ASRGAQTMLYGPLKPVGLEDP--RTGKEPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +    D+    G  T L    Q +    IPGLE    +R G      ++ +P+ +  
Sbjct: 264 LRQDNAAGDLYNIVGFQTHLKWGEQKRVFSMIPGLENARFVRYGVMHRNTFLCSPEVMQA 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +TKK   LF AGQ+ G  GY E+AA GL AG+N+AR +   D + F   ++ +G M  
Sbjct: 324 TYQTKKRLDLFFAGQMTGVEGYVESAASGLYAGLNAARIAQGKDPVIFPE-ETMMGAMAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYN 472
            +T   V               + +P NA+  + P   + +    ER  K   + I    
Sbjct: 383 YITHASV--------------KNFQPINANFGIVPKLQEKIRNKQERNLKISERAIDRIK 428

Query: 473 FLRSL 477
             ++L
Sbjct: 429 KFKNL 433


>gi|205830466|sp|Q1J6J1|TRMFO_STRPF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEIPDDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+                +    +F    
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPM------------TKEEFMAFHDAL 210

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
            T  +    +     E +      I+  A        YGP     +E      G R    
Sbjct: 211 TTAEEAP--LNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYAAIASR 436


>gi|290580545|ref|YP_003484937.1| putative glucose-inhibited division protein [Streptococcus mutans
           NN2025]
 gi|254997444|dbj|BAH88045.1| putative glucose-inhibited division protein [Streptococcus mutans
           NN2025]
          Length = 444

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/499 (21%), Positives = 169/499 (33%), Gaps = 89/499 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + V+G G AG EAA   AK G    L           HKTS    + C+ +  G
Sbjct: 1   MSQSY-INVVGAGLAGSEAAYQIAKRGIPVKLYEMRGVKRTPQHKTSNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++           R     + PA  G     DR  Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSII----------MRTGEAHRVPA--GGAMAVDRSGYAQAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            E+ +   + VI+ EV     +   +             +T  LT+ +  + +  +   +
Sbjct: 108 AELENNPLIQVIRNEVTEIPDDAITVI------------ATGPLTSDSLAKKIYKLNGGE 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI--IWDKTEKQFADERLIPF 226
                   +P     +  M   +   R   G  A L+       + +  +   +    PF
Sbjct: 156 GFYFYDAAAPIVDQSSIDMDKVYLKSRYDKGEAAYLNCPMTKEEFIRFYEALINAEEAPF 215

Query: 227 -SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            SF  +K                   ++       A        YGP     +E      
Sbjct: 216 NSFEREKY----------FEGCMPIEVM-------AKRGIKTLLYGPMKPVGLEYPHDYK 258

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +    IPGLE+ + +R G 
Sbjct: 259 GPRDGDYKAPYAVVQLRQDNAAGSLYNIVGFQTHLKWSEQKRVFSMIPGLEQAHFVRYGV 318

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                YI+ P  L PT  T K   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + 
Sbjct: 319 MHRNSYIDSPNLLAPTFATCKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFKDEEA 378

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F +T + IG +   +T                               P+ +  G I +
Sbjct: 379 VIFPQTTA-IGALPYYITHTKSK-----------------------HFQPMNINFGIIKD 414

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 415 LGGPRICDKKKRYEKIAER 433


>gi|296876493|ref|ZP_06900544.1| FADH(2)-oxidizing protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432486|gb|EFH18282.1| FADH(2)-oxidizing protein [Streptococcus parasanguinis ATCC 15912]
          Length = 444

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 164/498 (32%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAQQGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DRE +   + 
Sbjct: 60  DSLTNAVGLLKEEMRRLGSVILEAAEATRV------------PAGGALAVDREGFASRVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++     ++VI+ E+    T+   +  +  +  D    +   +    G +         
Sbjct: 108 EKVSQHPLIEVIRDEITELPTDAITVVATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTVDMDKVYLK-----SRYDKGEAAYLNCP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     +  
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 EGPRIRDKKERYEKIAER 433


>gi|327470032|gb|EGF15496.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK330]
          Length = 444

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+         +  +  +  D    +  T+    G +         
Sbjct: 108 ELVSNHPLIEVIREEITEIPEGDITVIATGPLTSDALAEKIHTLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGVKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGTLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|22537130|ref|NP_687981.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           2603V/R]
 gi|76788131|ref|YP_329685.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus agalactiae
           A909]
 gi|76797793|ref|ZP_00780059.1| gid protein [Streptococcus agalactiae 18RS21]
 gi|77412433|ref|ZP_00788739.1| gid protein [Streptococcus agalactiae CJB111]
 gi|33301133|sp|Q8DZX5|TRMFO_STRA5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123601865|sp|Q3K1B8|TRMFO_STRA1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|22533992|gb|AAM99853.1|AE014236_7 gid protein [Streptococcus agalactiae 2603V/R]
 gi|76563188|gb|ABA45772.1| gid protein [Streptococcus agalactiae A909]
 gi|76586869|gb|EAO63361.1| gid protein [Streptococcus agalactiae 18RS21]
 gi|77161524|gb|EAO72529.1| gid protein [Streptococcus agalactiae CJB111]
          Length = 444

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYSEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            EI     ++VI+ E+     +   +  +  +  D+   +   +    G +         
Sbjct: 108 EEIHKHPLIEVIRDEITDIPGDAITVIATGPLTSDSLAAKIHELNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIVDKNTIDINKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  T+K   LF AGQ+ G  GY E+AA GLVAGIN+ R+ N    +
Sbjct: 320 HRNSYMDSPNLLNQTFATRKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFNGESEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F +T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPQTTA-IGALPHYITHTDSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIATR 433


>gi|169830785|ref|YP_001716767.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Desulforudis
           audaxviator MP104C]
 gi|205830331|sp|B1I258|TRMFO_DESAP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|169637629|gb|ACA59135.1| gid protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 439

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 176/482 (36%), Gaps = 71/482 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           VIV+G G AG EA+    + G    L           HKT     + C+ ++        
Sbjct: 5   VIVVGAGLAGAEASWQLVRRGVPVVLYEMRPRKCTPAHKTGDFAELVCSNSLRAEALTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA  +              G     DR+L+  A+   + S 
Sbjct: 65  VGLLKEEMRRLGSLIMACADAHRV------------PAGGALAVDRQLFAAAVTERLTSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + E+    T +     +++            LT+      +  +   +      
Sbjct: 113 RLVTVCREEITTIPTAEL----VILATG--------PLTSDALADELRRLTGQEHLYFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +L +      F + R   G PA L+       + E +   E L+     T    
Sbjct: 161 AVAPIVTLESIDQDRVFRSSRYGRGDPAYLNCPM---SREEYERFWEALVAAERATRHTF 217

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R           ETH      ++  A    +   YGP     + D   R GER    + 
Sbjct: 218 ER-----------ETHFEGCLPVEVIAARGRETLLYGPLKPVGLVDP--RTGERPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE+   +R G      YIN P  L P
Sbjct: 265 LRQDNRAGTLYNLVGFQTNLKWGEQRRVFSMIPGLEQAEFVRYGVMHRNTYINAPVLLSP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  K   GLF+AGQ++G  GY E+AA GLVAG+N+AR    L+ + F    ++ G +I+
Sbjct: 325 NLMLKSRPGLFIAGQLSGVEGYVESAAAGLVAGLNAARLYKGLEPLVFPPETAH-GALIN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +      +P            + +P N +  L P   G ++    ER      + ++  
Sbjct: 384 YIV---TADP-----------ANFQPMNVNFGLFPPLPGKRVRRRPERNLAHAQRALERL 429

Query: 472 NF 473
             
Sbjct: 430 AA 431


>gi|310641537|ref|YP_003946295.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Paenibacillus polymyxa SC2]
 gi|309246487|gb|ADO56054.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Paenibacillus polymyxa SC2]
          Length = 446

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 169/503 (33%), Gaps = 71/503 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           ++    V VIG G AG EAA   A  G    L           H T     + C+ ++  
Sbjct: 1   MSELQKVTVIGAGLAGSEAAWQIASRGVPVKLYEMRPVVKTPAHHTDKFAELVCSNSLRA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            G     G L  E+  L+ L+   AD   +              G     DR+ +   + 
Sbjct: 61  NGLTNAVGVLKEEMRILNSLVLSAADRHAV------------PAGGALAVDRDGFSGHIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     ++V+  E+     +  ++  +       +    +     T +          
Sbjct: 109 DTLHQHPLIEVVNEELQELPQDGIVV--VAT---GPLTSPALSEQIKTLMGEEYFYFYD- 162

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + +  S  +   ++       R   G  A L+          +   D        
Sbjct: 163 -AAAPIVEKDSIDMSKVYL-----ASRYDKGEAAYLNCP------MNEAEFDA-FYEALI 209

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +    ++ E  I         ++M+              +GP     + +     GE 
Sbjct: 210 TAEVAQVKEFEKEIYFEGCMPIEVMMQ-------RGKQTALFGPMKPVGLVNP--HTGEL 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +    IPGLE+   +R G      +IN 
Sbjct: 261 PYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSMIPGLEEAEFVRYGVMHRNTFINS 320

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P++L PT + K  S LF AGQ+ G  GY E+AA GL+AGIN+AR +   +   F    + 
Sbjct: 321 PQQLHPTYQFKGRSNLFFAGQMTGVEGYVESAASGLLAGINAARAARGQEMFVFPAETT- 379

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +G M   +T+                    +P NA+  L P       I  +++K  A  
Sbjct: 380 LGSMARYITTADFKH--------------FQPMNANFGLLPKLETR--IRNKKEKNEALA 423

Query: 468 IQEYNFLRSLLKSLVLTSKNLSS 490
            +    LR  +    + S  + +
Sbjct: 424 NRALESLRGYINQTGVMSTEVQA 446


>gi|261407990|ref|YP_003244231.1| gid protein [Paenibacillus sp. Y412MC10]
 gi|261284453|gb|ACX66424.1| gid protein [Paenibacillus sp. Y412MC10]
          Length = 442

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 168/490 (34%), Gaps = 79/490 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +  S  V VIG G AG EAA   A  G    L           H T     + C+ ++  
Sbjct: 1   MTDSQRVTVIGAGLAGSEAAWQIASRGVPVTLYEMRPVVKTPAHHTDKFAELVCSNSLRA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            G     G L  E+  L+ L+   AD            +     G     DR+ +   + 
Sbjct: 61  NGLTNAVGVLKEEMRMLNSLVIGSAD------------RNSVPAGGALAVDRDGFSGEIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     ++V+  E+     E  ++             +T  LT+      +  +    
Sbjct: 109 ETLHQHPLIEVVNEEIQHIPEEGIVVI------------ATGPLTSPALSSQIRELMGED 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P     +  M   +   R   G  A L         TE++F  +       
Sbjct: 157 YFYFYDAAAPIVEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--DAFYDALI 209

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +    ++ E  I         ++M+              +GP     + +     G+ 
Sbjct: 210 NAEVAQLKEFEKEIYFEGCMPIEVMMK-------RGKQTALFGPMKPVGLVNP--HTGKL 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q + I  IPGLE   I+R G      ++N 
Sbjct: 261 PYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRIISMIPGLENAEIVRYGVMHRNTFVNS 320

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           PK L  T + K    L+LAGQ+ G  GY E+AA GL+AGIN+AR +   + I F + +S 
Sbjct: 321 PKLLEQTYQVKTRPNLYLAGQMTGVEGYVESAASGLIAGINAARAAQGREGIVFPQ-EST 379

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IG M   +T                   + +P NA+  L P     G      +KR    
Sbjct: 380 IGSMAYYITHADPD--------------NFQPMNANFGLLP-----GL-----EKRIRNK 415

Query: 468 IQEYNFLRSL 477
            ++   L + 
Sbjct: 416 KEKNEALANR 425


>gi|329766927|ref|ZP_08258455.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella haemolysans M341]
 gi|328837652|gb|EGF87277.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Gemella haemolysans M341]
          Length = 434

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 167/473 (35%), Gaps = 50/473 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           VIVIG G AG EAA   AK G    L   +   +         G L   + +R     +A
Sbjct: 5   VIVIGAGLAGSEAAWQLAKRGVKVDLYEMRPKKMTPAHKTQNFGELVCSNSLRANNITNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +  + PA  G     DR+ +   +   I +  N++VI  E+
Sbjct: 65  VGLLKEEMRMLDSIIIKCADATQVPA--GGALAVDRDKFSEMITETIKNHPNINVIGEEL 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                    +             +T  LT+    + + +  K          +P     +
Sbjct: 123 PQIPKGDVPVI-----------VATGPLTSDALSQDIRNYTKQDGLYFYDAAAPIIEKDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M+  +   R   G  A L+       K E       LI      +    ++ E  I  
Sbjct: 172 IDMEKVYLKSRYDKGEAAYLNCPM---TKEEFTNFYNELITA----EAAPLKEFEKEIYF 224

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A        +GP     +ED   +  +R    + L  +     +
Sbjct: 225 EGCMPFE-------EMAKRGEKTLLFGPMKPVGLEDP--KTDKRPYAVVQLRQDNSEGTL 275

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + I  IPGLE  NI+R G      Y+N P+ L  T   K+   +
Sbjct: 276 YNIVGFQTHLKWGEQKRIINMIPGLENANIVRYGVMHRNTYLNSPQLLEKTYRLKEEKNI 335

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQ+ G  GY E+AA G+VA +N+   +   + +    T++ IG M + +        
Sbjct: 336 YFAGQMTGVEGYVESAASGIVAALNALYNTEGREVVFP--TETMIGAMANYIVDSTS--- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLR 475
                       + +P NA+  +  P+  ++    E+ ++   + ++     +
Sbjct: 391 -----------KNFQPMNANFGIIKPLPERIKDKKEKYERYAKRSLEILENFK 432


>gi|260101614|ref|ZP_05751851.1| glucose-inhibited division protein [Lactobacillus helveticus DSM
           20075]
 gi|260084577|gb|EEW68697.1| glucose-inhibited division protein [Lactobacillus helveticus DSM
           20075]
          Length = 438

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 171/489 (34%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPQKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +N+ V + E+     +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LDNVTVHEEEITEIPEDGITIIATGPLTSDAL---AEQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L+                +    +F  +
Sbjct: 163 -----APIVAADSIDMNIVYKKSRYDRGEAAYLNCPM------------NKEQYENFTRE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N          I+  A        +GP     +ED     GE    
Sbjct: 206 LIKAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E KK  GLF AGQ+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G 
Sbjct: 322 LTASYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G K+    ER +K   + I
Sbjct: 381 MANYVT-----------TTSAKH---FQPMNASFALLPAWEGKKIRKKRERHEKISKRGI 426

Query: 469 QEYNFLRSL 477
           +  +  ++ 
Sbjct: 427 ESIDKFKAE 435


>gi|90961698|ref|YP_535614.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus salivarius
           UCC118]
 gi|122449073|sp|Q1WU04|TRMFO_LACS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|90820892|gb|ABD99531.1| Glucose inhibited division protein A [Lactobacillus salivarius
           UCC118]
          Length = 436

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 169/475 (35%), Gaps = 51/475 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EAA   A  G    L   +   +     N     L   + +R     +A
Sbjct: 5   VNVIGAGLAGSEAAWQIANQGVKVRLYEMRPQKLTPAHHNENFAELVCTNSLRANRLTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     I     +    PA  G     DRE +   +  ++ +  N+++I  E+
Sbjct: 65  AGLLKEEMRTFNSIIMESADKHSVPA--GGALAVDRETFSKEVTEKLHNHPNVEIINEEI 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +I++  +  +++     +   TG+   G+         A  + +  S  +  
Sbjct: 123 DEIPEGLTVIATGPLTSDAL--AKDITKFTGS--DGLFFFD----AAAPILEKSSLDMDK 174

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            ++K      R   G  A L+       K E       LI      +       E     
Sbjct: 175 VYLK-----SRYDKGEAAYLNAPM---TKDEFYNFYNELIKA----ETAELHDFEDDKFF 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   I       A        YGP     +ED   R G+     + L  +    D+
Sbjct: 223 EGCMPIEEI-------ASRGAQTMLYGPLKPVGLEDP--RTGKEPFAVVQLRQDNAAGDL 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE    +R G      ++ +P+ +  T +TKK   L
Sbjct: 274 YNIVGFQTHLKWGEQKRVFSMIPGLENARFVRYGVMHRNTFLCSPEVMQATYQTKKRLDL 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL AG+N+AR +   D + F   ++ +G M   +T   V   
Sbjct: 334 FFAGQMTGVEGYVESAASGLYAGLNAARIAQGKDPVIFPE-ETMMGAMAHYITHASV--- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSL 477
                       + +P NA+  + P   + +    ER  K   + I      ++L
Sbjct: 390 -----------KNFQPINANFGIVPKLQERIRNKQERNLKISERAIDRIKKFKNL 433


>gi|328467376|gb|EGF38454.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus helveticus
           MTCC 5463]
          Length = 438

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 171/489 (34%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPQKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +N+ V + E+     +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LDNVTVHEEEITEIPEDGITIIATGPLTSDAL---AEQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L+                +    +F  +
Sbjct: 163 -----APIVAADSIDMNIVYKKSRYDRGEAAYLNCPM------------NKEQYENFTRE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N          I+  A        +GP     +ED     GE    
Sbjct: 206 LIKAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E KK  GLF AGQ+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G 
Sbjct: 322 LTASYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G K+    ER +K   + I
Sbjct: 381 MANYVT-----------TASAKH---FQPMNASFALLPAWEGKKIRKKRERHEKISKRGI 426

Query: 469 QEYNFLRSL 477
           +  +  ++ 
Sbjct: 427 ESIDKFKAE 435


>gi|312866589|ref|ZP_07726804.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parasanguinis F0405]
 gi|311097888|gb|EFQ56117.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parasanguinis F0405]
          Length = 444

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 165/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAQQGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DRE +   + 
Sbjct: 60  DSLTNAVGLLKEEMRRLGSVILEAAEATRV------------PAGGALAVDREGFASRVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++     ++VI+ E+    T+   +  +  +  D    +  ++    G +         
Sbjct: 108 EKVSQHPLIEVIRDEITELPTDAITVVATGPLTSDALAEKIHSLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTVDMDKVYLK-----SRYDKGEAAYLNCP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVHAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     +  
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 EGPRIRDKKERYEKIAER 433


>gi|268608879|ref|ZP_06142606.1| tRNA (uracil-5-)-methyltransferase Gid [Ruminococcus flavefaciens
           FD-1]
          Length = 440

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 165/479 (34%), Gaps = 52/479 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---REIDA 64
           V VIG G AGCEAA   A+ G +  L   K               L   + +   R   A
Sbjct: 3   VSVIGAGLAGCEAAWRLAQEGINVKLYEMKPGKYSPAHKYSGFAELVCSNSLKAARLGSA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +         V   K+     G     DRE +  A+  +I S   ++VI  EV
Sbjct: 63  AGLLKYEM--EMLGSLTVPCAKENSVEAGGALAVDREKFSDAVTAKIKSHPLIEVIGEEV 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   II++  +   +M     +    G  L            +     +P  +  +
Sbjct: 121 TEIPDGTVIIATGPLTSGAM--AERIKELCGEGL------------SFYDAAAPIVTYES 166

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R   G    ++                +    +F    I+  +++     
Sbjct: 167 LDKEKVFYASRYGRGEADYVNCPM------------NKEEYLAFYEALISAEKVQLKDFE 214

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           T+  +       I+  A    D   +GP     I+D   R G R    + L  E     +
Sbjct: 215 THPFSVYEGCMPIEELARRGVDTMRFGPMKPVGIDDP--RTGRRPYAVVQLRRENSEGTL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    I GLE    +R G      +IN P+ L      ++   +
Sbjct: 273 FNLVGFQTNLKFGEQKRVFSMITGLENAEFMRYGVMHRNTFINSPELLNSDFSMRQHPEI 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           + AGQI G  GY E+AA G++AG  +ARK   L+ +    +++  G +   +        
Sbjct: 333 YFAGQITGVEGYMESAASGIIAGTAAARKLKGLEPVVLP-SETMTGALSAYI-------- 383

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGC-IGERRQKRFAKYIQEYNFLRSLLKSL 481
                S +      +P  A+  + P    +G  I +++ K  A   +    L+  L+ +
Sbjct: 384 -----SDSFNSGKFQPMGANMGILP---DIGMKIKDKKLKYEAYAERAVEALKKELERV 434


>gi|312862814|ref|ZP_07723054.1| tRNA:m(5)U-54 methyltransferase [Streptococcus vestibularis F0396]
 gi|311101674|gb|EFQ59877.1| tRNA:m(5)U-54 methyltransferase [Streptococcus vestibularis F0396]
          Length = 447

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 163/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQVAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIREEITEILDDAITVIASGPLTSDALAEKIHKLNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F +T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEEVIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|55822863|ref|YP_141304.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           CNRZ1066]
 gi|81170605|sp|Q5M014|TRMFO_STRT1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|55738848|gb|AAV62489.1| glucose-inhibited division protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 447

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 162/492 (32%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI S 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIESH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIREEITEIPDDAITVIASGPLTSDALAEKIHELNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+                +    +F    
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPM------------TKEEFMAFYEAL 210

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
            T  +    +     E +      I+  A        YGP     +E      G R    
Sbjct: 211 TTAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYMGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F  T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|329121222|ref|ZP_08249849.1| tRNA:M(5)U-54 methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327470156|gb|EGF15619.1| tRNA:M(5)U-54 methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 431

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 166/489 (33%), Gaps = 76/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           +IVIG G AG EAA   AK      LI          H T   G + C+ ++        
Sbjct: 5   IIVIGAGLAGSEAAWQIAKNKIPVTLIEMRPKKNTPVHDTEYFGELVCSNSLRAASLQNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD                  G     DR  Y  A+  +I S 
Sbjct: 65  AGLLKEEMRRLDSLIIKTADEH------------QVPAGGALAVDRIGYAKAVTEKIKSN 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +++   E+     ++ +I             +T  LT G     +      K      
Sbjct: 113 PFIEIRYEEINEIPDDETVII------------ATGPLTEGKMAESIEQFCDGKGFYFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+                     SF      
Sbjct: 161 AAAPIVTKESLDMDVIYKASRYDRGEAAYLNCPM------------NEEEYNSFYEALCQ 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A+   D   +GP     + +   + G+     + 
Sbjct: 209 AETAEVHGFEKNK--VFEGCMPIEVMALRGKDTMRFGPMKPVGLINP--KTGKEPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGL+    +R G      YIN P+ L  
Sbjct: 265 LRQDNKEDALYNIVGFQTHLKWGEQKRVFGMIPGLQNAEFVRYGVMHRNTYINTPELLNE 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T+ETKK  GLF AGQ+ G  GY E+AA G+VA  ++  +    +   F R ++ IG + +
Sbjct: 325 TMETKKREGLFFAGQMTGVEGYIESAASGIVAAYSATARYLGKEPKPFPR-ETAIGSLCN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            ++                   + +P N +  L P       I E+R  +  K  +    
Sbjct: 384 YISHFE--------------GKNFQPMNINFGLMP-------ILEKRYPKKIKNEKIVER 422

Query: 474 LRSLLKSLV 482
               ++ L+
Sbjct: 423 ALQAIEKLI 431


>gi|228476748|ref|ZP_04061414.1| tRNA:M(5)U-54 methyltransferase [Streptococcus salivarius SK126]
 gi|228251619|gb|EEK10720.1| tRNA:M(5)U-54 methyltransferase [Streptococcus salivarius SK126]
          Length = 447

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 162/492 (32%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIREEITEIPDDAITVIASGPLTSDALAEKIHKLNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F  T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEELIFPHTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|87124706|ref|ZP_01080554.1| probable glucose inhibited division protein [Synechococcus sp.
           RS9917]
 gi|86167585|gb|EAQ68844.1| probable glucose inhibited division protein [Synechococcus sp.
           RS9917]
          Length = 459

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 174/513 (33%), Gaps = 76/513 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +N+   V+VIG G AG EAA   A  G    L+          H +S    + C+ + G 
Sbjct: 1   MNQDAPVVVIGAGLAGTEAAWQIASAGVPVRLVEMRPVRRSPAHHSSEFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  L+ R ADA  +              G     DR  Y  A+ 
Sbjct: 61  LSSDRAAGLLQEELRRLGSLVIRTADAHAV------------PAGGALAVDRGRYSAALT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     + V + E        +I         S      +   TG   R   H     
Sbjct: 109 AALEQHPLVTVERREQTELPGAGDIAVLATGPLTSEPLAEQLRAFTG---RADCHFFD-- 163

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + +  S  L  +F    +D G          D   I     ++QF        +F
Sbjct: 164 -AASPIVEGESIDLSVAFRASRYDKG----------DADYINCPMNKEQF-------LAF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK------- 281
               +T  Q E         T       I+  A    D   YGP     + D        
Sbjct: 206 REALLTAEQAELKDFEKENATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVND 265

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             VR  +R    + L  E  +  +    G  T L    Q + +R IPGLE    +R G  
Sbjct: 266 RDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLIPGLENAEFVRFGVM 325

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++  P+ L  TL+ ++   L  AGQI GT GY  A A G +AG N+AR +   + +
Sbjct: 326 HRNTFLEAPQLLDATLQFRQRPTLLAAGQITGTEGYAAAVAGGWLAGTNAARLALGQEPL 385

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
               T S IG +   +                      +P   +  L P   +   I ++
Sbjct: 386 QLPAT-SMIGALTHFIAEAPSE--------------KFQPMPPNFGLLPELPER--IRDK 428

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS 492
           R++  A   +    L  LL +   +  +++ T 
Sbjct: 429 RRRYGAYRDRALADL--LLATEKRSPSHVACTG 459


>gi|322373044|ref|ZP_08047580.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C150]
 gi|321278086|gb|EFX55155.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sp. C150]
          Length = 447

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 162/492 (32%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIENN 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIREEITEIPDDAITVIASGPLTSDALAEKIHKLNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F  T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFMGEDEVIFPHTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|209559451|ref|YP_002285923.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           NZ131]
 gi|209540652|gb|ACI61228.1| Gid-like Protein [Streptococcus pyogenes NZ131]
          Length = 448

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 166/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVRATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEVPNDAITVIATGPLTSDALAKKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F      
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----D 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTNAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|329929263|ref|ZP_08283016.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. HGF5]
 gi|328936632|gb|EGG33075.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. HGF5]
          Length = 444

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 166/484 (34%), Gaps = 79/484 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA   A  G    L           H T     + C+ ++   G    
Sbjct: 9   VTVIGAGLAGSEAAWQIASRGVPVTLYEMRPVVKTPAHHTDKFAELVCSNSLRANGLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+   AD            +     G     DR+ +   +   +   
Sbjct: 69  VGVLKEEMRMLNSLVIGSAD------------RNSVPAGGALAVDRDGFSGEITETLHQH 116

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V+  E+     E  ++             +T  LT+      +  +          
Sbjct: 117 PLIEVVNEEIQHIPEEGIVVI------------ATGPLTSPALSSQIRELMGEDYFYFYD 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +         +   
Sbjct: 165 AAAPIVEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--DAFYDALINAEVAQ 217

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++M+              +GP     + +     G+     + 
Sbjct: 218 LKEFEKEIYFEGCMPIEVMMK-------RGKQTALFGPMKPVGLVNP--HTGKLPYAVVQ 268

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + I  IPGLE   I+R G      ++N PK L  
Sbjct: 269 LRQDNAAGTLYNLVGFQTHLKWGEQKRIISMIPGLENAEIVRYGVMHRNTFVNSPKLLEQ 328

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    L+LAGQ+ G  GY E+AA GL+AGIN+AR +   + I F + +S IG M  
Sbjct: 329 TYQVKTRPNLYLAGQMTGVEGYVESAASGLIAGINAARAAQGREGIVFPQ-ESTIGSMAY 387

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                   + +P NA+  L P     G      +KR     ++   
Sbjct: 388 YITHADPD--------------NFQPMNANFGLLP-----GL-----EKRIRNKKEKNEA 423

Query: 474 LRSL 477
           L + 
Sbjct: 424 LANR 427


>gi|323127293|gb|ADX24590.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 448

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 167/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITEIPNDAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRNNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALVFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|24379443|ref|NP_721398.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus mutans UA159]
 gi|26006973|sp|P05428|TRMFO_STRMU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|24377377|gb|AAN58704.1|AE014939_11 putative glucose-inhibited division protein [Streptococcus mutans
           UA159]
          Length = 444

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 108/499 (21%), Positives = 169/499 (33%), Gaps = 89/499 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + V+G G AG EAA   AK G    L           HKTS    + C+ +  G
Sbjct: 1   MSQSY-INVVGAGLAGSEAAYQIAKRGIPVKLYEMRGVKRTPQHKTSNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++           R     + PA  G     DR  Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSII----------MRTGEAHRVPA--GGAMAVDRSGYAQAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            E+ +   + VI+ EV     +   +             +T  LT+ +  + +  +   +
Sbjct: 108 AELENNPLIQVIRNEVTEIPDDAITVI------------ATGPLTSDSLAKKIYKLNGGE 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI--IWDKTEKQFADERLIPF 226
                   +P     +  M   +   R   G  A L+       + +  +   +    PF
Sbjct: 156 GFYFYDAAAPIVDQSSIDMDKVYLKSRYDKGEAAYLNCPMTKEEFIRFYEALINAEEAPF 215

Query: 227 -SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            SF  +K                   ++       A        YGP     +E      
Sbjct: 216 NSFEREKY----------FEGCMPIEVM-------AKRGIKTLLYGPMKPVGLEYPQDYK 258

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +    IPGLE+ + +R G 
Sbjct: 259 GPRDGDYKAPYAVVQLRQDNAAGSLYNIVGFQTHLKWSEQKRVFSMIPGLEQAHFVRYGV 318

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                YI+ P  L PT  T K   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + 
Sbjct: 319 MHRNSYIDSPNLLAPTFATCKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFKDEEA 378

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F +T + IG +   +T                               P+ +  G I +
Sbjct: 379 VIFPQTTA-IGALPYYITHTKSK-----------------------HFQPMNINFGIIKD 414

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 415 LGGPRIRDKKKRYEKIAER 433


>gi|21910357|ref|NP_664625.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           MGAS315]
 gi|28895934|ref|NP_802284.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pyogenes
           SSI-1]
 gi|21904554|gb|AAM79428.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           MGAS315]
 gi|28811184|dbj|BAC64117.1| putative glucose-inhibited division protein [Streptococcus pyogenes
           SSI-1]
          Length = 494

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 166/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 55  INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 114

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 115 VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 162

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 163 PLIEVIRDEITEIPNDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 213

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 214 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 254

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 255 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 314

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 315 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 374

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    L  AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 375 DSPNLLTETFQSRSNPNLLFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 434

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 435 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 470

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 471 DKKERYEAIASR 482


>gi|306833468|ref|ZP_07466595.1| tRNA:M(5)U-54 methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304424238|gb|EFM27377.1| tRNA:M(5)U-54 methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 445

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 166/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           M   SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ 
Sbjct: 1   MSQSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGKKATPQHKTDKFAELVCSNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A++  +              G     DR+ +   +
Sbjct: 60  GDSLTNAVGLLKEEMRRLDSVIMKAAESTRV------------PAGGALAVDRDGFSQMV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             E+ +   ++VI+ E+    T+   +  S  +  D    +   +    G +        
Sbjct: 108 TDEVTNHPLIEVIREEITEIPTDAITVIASGPLTSDALAEKIHELNGGDGFYFYD----- 162

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  S  +   ++K      R   G  A L+                +   
Sbjct: 163 ----AAAPIVDKNSIDMDKVYLK-----SRYDKGEAAYLNCPM------------TKEEF 201

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            +F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 202 MAFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYK 259

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
             R          + L  +     +    G  T L    Q +  R IPGLE    +R G 
Sbjct: 260 EPRDGEFKTPYAVVQLRQDNAAGSLFNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGV 319

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  T++   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + 
Sbjct: 320 MHRNSYMDSPNLLTETFATRQNPDLFFAGQMTGVEGYVESAASGLVAGINAVRRFKGEEV 379

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F +T + IG +   +T                               P+ +  G + E
Sbjct: 380 VIFPQTTA-IGSLPHYITHAESK-----------------------HFQPMNVNFGIVKE 415

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 416 LDGPRIRDKKERYEKVAER 434


>gi|327183489|gb|AEA31936.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1118]
          Length = 438

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 165/487 (33%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+ V + E+     +   +             +T  LT+      +            
Sbjct: 112 LDNVTVHEEEITEIPEDGITVI------------ATGPLTSDALAEKIQEFSGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G  A L         T++Q+         F  + I
Sbjct: 160 DAAAPIVAADSIDMDIVYKKSRYDRGEAAYL-----NCPMTKEQY-------EKFAHELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                +      N          I+  A        +GP     +ED     GE     +
Sbjct: 208 NAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  L 
Sbjct: 264 QLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLT 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            + E +   GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M 
Sbjct: 324 ASYEAQNRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGEETVAFPK-DTALGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
           + +T+                  + +P NA   L P   G K+    ER +K   + +  
Sbjct: 383 NYITTTSA--------------KNFQPMNASFALLPALEGKKIRKKRERHEKISERGLAS 428

Query: 471 YNFLRSL 477
            +  ++ 
Sbjct: 429 LDKFKAE 435


>gi|325694499|gb|EGD36408.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK150]
          Length = 444

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 DLVTNHPLIEVIREEITEIPEDAITVIATGPLTSDTLAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|324992898|gb|EGC24818.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK405]
 gi|327460351|gb|EGF06688.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1057]
          Length = 444

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDVLAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|332360882|gb|EGJ38688.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK49]
          Length = 444

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 168/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +  T+    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDTLAEKIHTLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           +F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 NFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|315038212|ref|YP_004031780.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1112]
 gi|325956666|ref|YP_004292078.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           30SC]
 gi|312276345|gb|ADQ58985.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus amylovorus
           GRL 1112]
 gi|325333231|gb|ADZ07139.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           30SC]
          Length = 438

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 165/487 (33%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRQLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRD 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+ V + E+     +   +             +T  LT+      +            
Sbjct: 112 LDNVTVHEEEITEIPEDGITVI------------ATGPLTSDALAEKIQKFSGTDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G  A L         T++Q+         F  + I
Sbjct: 160 DAAAPIVAADSIDMDIVYKKSRYDRGEAAYL-----NCPMTKEQY-------EKFAHELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                +      N          I+  A        +GP     +ED     GE     +
Sbjct: 208 NAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  L 
Sbjct: 264 QLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDVLT 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            + E +   GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M 
Sbjct: 324 ASYEAQNRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGEETVAFPK-DTALGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
           + +T+                  + +P NA   L P   G K+    ER +K   + +  
Sbjct: 383 NYITTTSA--------------KNFQPMNASFALLPALEGKKIRKKRERHEKISERGLAS 428

Query: 471 YNFLRSL 477
            +  ++ 
Sbjct: 429 LDKFKAE 435


>gi|55820943|ref|YP_139385.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           LMG 18311]
 gi|81170606|sp|Q5M4M7|TRMFO_STRT2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|55736928|gb|AAV60570.1| glucose-inhibited division protein [Streptococcus thermophilus LMG
           18311]
          Length = 447

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 162/492 (32%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI S 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIESH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRKEITEIPDDAITVIASGPLTSDALAEKIHELNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+                +    +F    
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPM------------TKEEFMAFYEAL 210

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
            T  +    +     E +      I+  A        YGP     +E      G R    
Sbjct: 211 TTAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYMGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F  T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|332360454|gb|EGJ38265.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK355]
          Length = 444

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 165/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKAAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGNGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVA IN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVASINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|332366889|gb|EGJ44630.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 106/499 (21%), Positives = 169/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ 
Sbjct: 12  VVSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLR 70

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A+A  +              G     DRE +   +
Sbjct: 71  GDALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLV 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
              + +   ++VI+ E+     +   +  +  +  D    +   +    G +        
Sbjct: 119 TDLVTNHPLIEVIREEITEIPEDAITVIATGPLTSDTLAEKIHALNGGDGFYFYD----- 173

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  +  +   ++K      R   G  A L+          KQ        
Sbjct: 174 ----AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------ 212

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    IT  +    +     E +      I+  A        YGP     +E      
Sbjct: 213 MDFHHALITAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQ 270

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 271 GPRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGDQKRVFQMIPGLENAEFVRYGV 330

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + 
Sbjct: 331 MHRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEA 390

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F  T + IG +   +T                               P+ +  G I E
Sbjct: 391 LIFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKE 426

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 427 LDGPRIRDKKERYEKIAER 445


>gi|332522955|ref|ZP_08399207.1| tRNA:m(5)U-54 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314219|gb|EGJ27204.1| tRNA:m(5)U-54 methyltransferase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 444

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 170/498 (34%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT     + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKQTPQHKTDNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DR  Y  A+ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRAGEAHRV------------PAGGAMAVDRIGYAEAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            E+++   ++VI+GE+     +   +  +  +  D    +   +    G +         
Sbjct: 108 AELVNHPLIEVIRGEITEIPNDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  + ++   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIIDKSTINMDKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPKDYTG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  + +   +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNVAGSLYNMVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+A+K      +
Sbjct: 320 HRNSYMDSPNLLKQTFQSRANDNLFFAGQMTGVEGYVESAASGLVAGINAAKKFKGEAEV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  + + 
Sbjct: 416 EGPRIRDKKERYEAIAAR 433


>gi|325696508|gb|EGD38398.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK160]
          Length = 444

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKTS    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQIVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDVLAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|125718004|ref|YP_001035137.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sanguinis
           SK36]
 gi|166989571|sp|A3CN32|TRMFO_STRSV RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|125497921|gb|ABN44587.1| Gid-like protein, putative [Streptococcus sanguinis SK36]
          Length = 444

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 167/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK+  LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKLPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|300812248|ref|ZP_07092686.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496762|gb|EFK31846.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 439

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 170/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L   +   +           + C  ++        
Sbjct: 5   VTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + ADA                 G     DREL+   +  ++ S 
Sbjct: 65  VGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSKYVTDKLTSL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+    +E   +             +T  LT+ +    +      +      
Sbjct: 113 PEVTIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGTESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+          K+  D       F    + 
Sbjct: 161 AAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCP------MTKEEYDR------FANALVH 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N E        I+  A        +GP     +E+   + G+     + 
Sbjct: 209 AETAEMH-GFENSEVFE-GCMPIEVMAARGAKTMLFGPLKPVGLENP--KDGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  
Sbjct: 265 LRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M  
Sbjct: 325 SYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +T+                    +P NA   L P   G K+    ER +K   + + + 
Sbjct: 384 YITTTDTKH--------------FQPMNASFALIPGLEGKKIRNKRERHEKISERGLADL 429

Query: 472 NFLRSL 477
              ++ 
Sbjct: 430 AAFKAE 435


>gi|323466641|gb|ADX70328.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus helveticus H10]
          Length = 438

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 172/489 (35%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPQKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLCG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +N+ V + E+ G   +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LDNVTVHEEEITGIPEDSITIIATGPLTSDAL---AEQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L+                +    +F  +
Sbjct: 163 -----APIVAADSIDMNIVYKKSRYDRGEAAYLNCPM------------NKEQYENFTRE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N          I+  A        +GP     +ED     GE    
Sbjct: 206 LIKAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E KK  GLF AGQ+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G 
Sbjct: 322 LTASYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G ++    ER +K   + I
Sbjct: 381 MANYVT-----------TTSAKH---FQPMNASFALLPAWEGKRIRKKRERHEKISKRGI 426

Query: 469 QEYNFLRSL 477
           +  +  ++ 
Sbjct: 427 ESIDKFKAE 435


>gi|308068646|ref|YP_003870251.1| protein gid-like protein [Paenibacillus polymyxa E681]
 gi|305857925|gb|ADM69713.1| Protein gid-like protein [Paenibacillus polymyxa E681]
          Length = 446

 Score =  262 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 99/503 (19%), Positives = 170/503 (33%), Gaps = 71/503 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           ++    V VIG G AG EAA   A  G    L           H T     + C+ ++  
Sbjct: 1   MSELQKVTVIGAGLAGSEAAWQIASRGVPVKLYEMRPVVKTPAHHTDKFAELVCSNSLRA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            G     G L  E+  L+ L+   AD   +              G     DR+ +   + 
Sbjct: 61  NGLTNAVGVLKEEMRILNSLILSAADRHAV------------PAGGALAVDRDGFSGHIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     ++V+  E+     +  ++             +T  LT+      +  +   +
Sbjct: 109 ETLHQHPLIEVVNEELQEIPQDGIVVI------------ATGPLTSPALSEQIKSLMGEE 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P     +  M   +   R   G  A L+          +   D        
Sbjct: 157 YFYFYDAAAPIVEKDSIDMSKVYLASRYDKGEAAYLNCP------MNEAEFDA-FYEALI 209

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +    ++ E  I         ++M+              +GP     + +     GE 
Sbjct: 210 TAEVAQVKEFEKEIYFEGCMPIEVMMQ-------RGKQTALFGPMKPVGLVNP--HTGEL 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +    IPGLE+   +R G      +IN 
Sbjct: 261 PHAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSMIPGLEEAEFVRYGVMHRNTFINS 320

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P++L PT + K  S LF AGQ+ G  GY E+AA GL+AG+N+AR +   +   F    + 
Sbjct: 321 PQQLHPTYQFKGRSNLFFAGQMTGVEGYVESAASGLLAGMNAARAARGQEMFVFPAETT- 379

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           +G M   +T+                    +P NA+  L P   K   I  +++K  A  
Sbjct: 380 LGSMARYITTADFKH--------------FQPMNANFGLLPKLEKR--IRNKKEKNEALA 423

Query: 468 IQEYNFLRSLLKSLVLTSKNLSS 490
            +    L   +    + S  + +
Sbjct: 424 NRALESLHGFINETGVMSAEVQA 446


>gi|116627729|ref|YP_820348.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus thermophilus
           LMD-9]
 gi|122267674|sp|Q03KX0|TRMFO_STRTD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116101006|gb|ABJ66152.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Streptococcus thermophilus LMD-9]
 gi|312278277|gb|ADQ62934.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Streptococcus thermophilus ND03]
          Length = 447

 Score =  262 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 107/492 (21%), Positives = 162/492 (32%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI S 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIESH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRKEITEIPDDAITVIASGPLTSDALAEKIHELNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+                +    +F    
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPM------------TKEEFMAFYEAL 210

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
            T  +    +     E +      I+  A        YGP     +E      G R    
Sbjct: 211 TTAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYMGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     D + F  T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|205830471|sp|Q38WZ1|TRMFO_LACSS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 436

 Score =  262 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 100/494 (20%), Positives = 170/494 (34%), Gaps = 74/494 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M  + + V VIG G AG EAA   AK G    L           H T     + C  ++ 
Sbjct: 1   MTTKPF-VNVIGAGLAGSEAAWQIAKRGVDVHLYEMRPVKMTPAHHTEQFAELVCTNSLR 59

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G +  E+  LD ++   AD   +              G     DR  +   +
Sbjct: 60  ANQVTNAAGLIKEEMRRLDSIIIAAADENAV------------PAGGALAVDRTPFSQTV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             ++ + E + V   E+  F     ++ +  +         S +  + G +         
Sbjct: 108 TDKLANHERVTVHHEELTAFPEGPTVVATGPLTSPGLAEEISALNGSEGLYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  S      ++K      R   G  A L+      +             F
Sbjct: 162 ---AAAPILDKNSIDFDKVYLK-----SRYDKGEAAYLNCPMTEAE-------------F 200

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                 + + ++       + +        I+  A        +GP     +E+   + G
Sbjct: 201 EAFYKALISAEVAEMHDFEDEKFFD-GCMPIEVMAKRGIKTMLFGPLKPVGLENP--KTG 257

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E+    + L  +     +    G  T L    Q +  R IPGLE    +R G      ++
Sbjct: 258 EQPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFM 317

Query: 347 -NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            +P  L PT ++K+ S LF AGQ+ G  GY E+AA GLVAGIN++R +   + + F  T 
Sbjct: 318 KSPDVLLPTYQSKQRSDLFFAGQMTGVEGYVESAASGLVAGINASRLALDTEPVTFPATT 377

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRF 464
           +  G M   +T                     +P NA+     P+  ++    ER Q   
Sbjct: 378 AM-GSMAHYITHTSAKH--------------FQPMNANFGIFEPLKQRIRDKKERNQALA 422

Query: 465 AKYIQEYNFLRSLL 478
            + +   +  +  L
Sbjct: 423 DRALASIDTFKETL 436


>gi|218438815|ref|YP_002377144.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 7424]
 gi|218171543|gb|ACK70276.1| gid protein [Cyanothece sp. PCC 7424]
          Length = 446

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 170/484 (35%), Gaps = 65/484 (13%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----GKG 56
           VIGGG AG EAA   A+ G    L           H ++ +  + C+ + G +      G
Sbjct: 7   VIGGGLAGTEAAWQIAQAGVPVILYEMRPLRTSPAHHSAELAELVCSNSFGAMETDRASG 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  ++ + AD                  G     DR ++   + + + +   
Sbjct: 67  LLHEELRRLGSIIIKTADKH------------SVPAGGALAVDRGVFSTELTQTLENHPL 114

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +++ + EV     ++     +V+            LT+    + + +   +   +     
Sbjct: 115 IELRRTEVTEIPQDEV----VVLTSG--------PLTSPDLAQDLQNFTGMDYFSFFDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +   +  F   R   G  A L+                +     F  +     
Sbjct: 163 SPIIVGDSINKEIAFLASRYDKGEAAYLNCPM------------NQDQYLHFWQELSQAE 210

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q +                 I+  A    D   YGP     + D      +R    I L 
Sbjct: 211 QADLKDFERETAKFFEGCLPIEELARRGEDTMRYGPLKPVGLCDPRYE-NQRPYAVIQLR 269

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            E     +    G  T L    Q +  R IPGLE+   +R G      +IN P+ L+P+L
Sbjct: 270 QEDKAGQLWNMVGFQTNLKWGEQKRVFRLIPGLEEAEFVRMGVMHRNTFINSPQLLYPSL 329

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K    LF AGQ+ GT GY  A A G +AG N+AR    LD +    T + +G + + +
Sbjct: 330 QFKSRPTLFAAGQLVGTEGYTAATAGGWLAGTNAARLVLGLDLVTIPVT-TMMGSLFEFI 388

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           +S     P         + I          L  +  ++    ER  K   + +++ +  R
Sbjct: 389 SSAS---PKHFQPMPPNFGI----------LPQLSSRVKNKRERYGKYRDRALEDLDAWR 435

Query: 476 SLLK 479
           S LK
Sbjct: 436 SELK 439


>gi|322516883|ref|ZP_08069782.1| tRNA:M(5)U-54 methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322124583|gb|EFX96060.1| tRNA:M(5)U-54 methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 447

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 163/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A  +              G     DRE Y  A+  EI + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEAHRV------------PAGGAMAVDREGYAEAVTAEIENN 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  S  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIREEITEIPDDAITVIASGPLTSDALAEKIHELNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIVDKATIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGDF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++K    LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F +T 
Sbjct: 329 DSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEEVIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPYYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  +   
Sbjct: 425 DKKERYEKIAER 436


>gi|148265708|ref|YP_001232414.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter uraniireducens
           Rf4]
 gi|205830335|sp|A5G7S3|TRMFO_GEOUR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146399208|gb|ABQ27841.1| gid protein [Geobacter uraniireducens Rf4]
          Length = 435

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 172/484 (35%), Gaps = 55/484 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI     + +IG G AGCEAA  AA  G +  L   K          P +  L   + +R
Sbjct: 1   MIKEK--LTIIGAGLAGCEAAWQAAGRGVAVTLHEMKPEKYSPAHHLPGLAELVCSNSLR 58

Query: 61  EI---DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
                +A+  L   +     +        + PA  G     DR L+   +  +I +   +
Sbjct: 59  GESLENAVGLLKEELRRLGSLFMEAALATRVPA--GGALAVDRGLFSAFITDKIENHPLI 116

Query: 118 DVIQGEVAGFNTEKNIIS--SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           +V+ GEVA    +  +I     +  D      +++   TG +L                 
Sbjct: 117 EVVHGEVAEIPADGTVIVASGPLTSDAL---AASIGKYTGDYL------------YFYDA 161

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P  +  +  +   F   R   G         +     E ++  +  I      +K+  
Sbjct: 162 IAPIVTSDSIDLSKAFRASRYGKGDGD----DYLNCPLDEAEY--KAFIAALLAAEKVAA 215

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           ++ E  +          + E          D   +GP     + D   R G      + L
Sbjct: 216 KEFEKVVHFEGCMPIEEMAE-------RGLDTLRFGPMKPVGLIDP--RTGIEPHAVVQL 266

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             E     +    G  T L    Q +  RTIPGL K   +R G      +IN P+ L  T
Sbjct: 267 RQENREGTLFNLVGFQTKLTYPEQQRIFRTIPGLGKAEFVRLGSMHRNTFINAPQLLLST 326

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            + K+   +  AGQI G  GY E+AA G +AG+N AR +   + +    + + +G +++ 
Sbjct: 327 FQLKREPRILFAGQITGVEGYVESAASGFLAGLNGARLAKG-EALIVPPSVTALGALVNH 385

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           +TS                    +P N +  L P         E+R K   + + E +  
Sbjct: 386 ITSAPAKH--------------FQPMNINYGLFPDLAGRVKKKEKRAKLAERALTELDGW 431

Query: 475 RSLL 478
            + L
Sbjct: 432 MNTL 435


>gi|325689701|gb|EGD31705.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK115]
          Length = 444

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/505 (21%), Positives = 169/505 (33%), Gaps = 88/505 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DVLTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDVITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIVDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL-LKSLVL 483
              R     + Y  +    LK L  
Sbjct: 416 EGPRIRDKKERYEKIAERALKDLQF 440


>gi|322385530|ref|ZP_08059174.1| tRNA:M(5)U-54 methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321270268|gb|EFX53184.1| tRNA:M(5)U-54 methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 444

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 167/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILRSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++V++ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVSNHPLIEVMREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR  N  + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFNGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|328946305|gb|EGG40449.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1087]
          Length = 444

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEIKEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVDTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLAHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|86607553|ref|YP_476315.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123504233|sp|Q2JQ64|TRMFO_SYNJB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86556095|gb|ABD01052.1| gid protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 459

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 168/488 (34%), Gaps = 73/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG----LG 54
           + V+GGG AG EAA   A+ G    L           H T  +G + C+ + G       
Sbjct: 22  IHVVGGGLAGTEAAWQIAQAGLPVILSEMRPVRQSPAHHTDQLGELVCSNSFGAAASDRA 81

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   AD   +              G     DR  +  A+   I + 
Sbjct: 82  AGLLKEELRQLGSLVIATADCHAV------------PAGGALAVDRARFSQALTEAIQNH 129

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + EV                +   + C T  LT+    + +     L+  +   
Sbjct: 130 PRITLRREEVTEIP------------EGIAVLC-TGPLTSDPLAKALQAFTGLEYLSFFD 176

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP  +  +      F   R   G  A L+       + E+           F    + 
Sbjct: 177 ASSPIVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEA-EYER-----------FWRALVE 224

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q                   I+  A    D   +GP     + D   R G R    + 
Sbjct: 225 AEQAPLKDFEREERKFFEGCLPIEEMARRGKDTLCFGPLKPVGLVDP--RTGSRPYAVVQ 282

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q +  R IPGLE+   +R G      ++N P+ L+P
Sbjct: 283 LRQEDKAGQLWNLVGFQTNLKWGEQQRVFRLIPGLEQAEFVRFGVMHRNTFLNSPQLLWP 342

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ ++   LF AGQ+ GT GY  A A G +AG N+AR +  L  I     ++ +G +  
Sbjct: 343 TLQFRRRPTLFAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLPP-ETMMGSLFQ 401

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            ++S                    +P  A+  L P        G + + +  +Y +  + 
Sbjct: 402 FISSADPRH--------------FQPMPANFGLLP-----DLEGRKLRNKQERYGRYRDR 442

Query: 474 LRSLLKSL 481
             + LK+ 
Sbjct: 443 ALAALKTT 450


>gi|26006761|sp|Q8K7G4|TRMFO_STRP3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 448

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 166/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAKSVTAELENH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     +   +  +  +  D    +   V    G +             A 
Sbjct: 117 PLIEVIRDEITEIPNDAITVIATGPLTSDALAEKIHAVNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++    L  AGQ+ G  GY E+AA GLVAGIN+AR   + + + F +T 
Sbjct: 329 DSPNLLTETFQSRSNPNLLFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|159903126|ref|YP_001550470.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9211]
 gi|205830319|sp|A9BEK6|TRMFO_PROM4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|159888302|gb|ABX08516.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9211]
          Length = 474

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/516 (20%), Positives = 186/516 (36%), Gaps = 67/516 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +N+S  + ++G G AG EAA   A+ G    L           H T+    + C+ + G 
Sbjct: 1   MNQSDSITIVGAGLAGSEAAWQVARAGIHVELYEMRPLKASPAHHTADFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L+  +   AD                  G     DR  +   + 
Sbjct: 61  LSADRAAGLLQEELRYLNSFVINSADKH------------SVPAGGALAVDRSRFSADIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            +I S   + V + E+    +E+ I              ++  LT+      + +   ++
Sbjct: 109 EKITSHPLITVKRVELQKLPSEEQITV-----------IASGPLTSKNLAEDLKNFTGIQ 157

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP  +  +  ++F F   R   G     D   I     +KQ+        SF
Sbjct: 158 ECHFFDAASPIIAGESIDLRFAFRGSRYDKG-----DADYINCPMNKKQY-------LSF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK------- 281
             + I   Q E      +          I+  A    D   YGP     + D        
Sbjct: 206 RDELIKAEQAELKDFEKSSSNFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDLNN 265

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             +R  +R    + L  E     +    G  T L    Q + +R IPGL+  + +R G  
Sbjct: 266 REIRREKRAYAVVQLRQEDREGKLWNLVGFQTNLKWGEQKRVLRMIPGLQNADFVRFGVM 325

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++  PK L  +L+ +K + L  AGQI GT GY  A A G +AG N+A  +     I
Sbjct: 326 HRNTFLESPKLLNASLQFRKRAKLLAAGQITGTEGYVAAVAGGWLAGTNAALLAMGHKPI 385

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F R ++ IG +   ++   +        S +  + S +P   +  + P       I E+
Sbjct: 386 IFPR-NTMIGALTHFISDWELR-------SDSNRKNSFQPMPPNFGVLPKLTTQ--IKEK 435

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF 495
           R +  A   +  + L++ +++    ++ L  + +  
Sbjct: 436 RARYAAYRDRALDELKASIRNHTCLAQELGISKLPI 471


>gi|313123912|ref|YP_004034171.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmfo
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280475|gb|ADQ61194.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325686015|gb|EGD28074.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 439

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 170/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L   +   +           + C  ++        
Sbjct: 5   VTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + ADA                 G     DREL+   +  ++ S 
Sbjct: 65  VGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSKYVTDKLTSL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+    +E   +             +T  LT+ +    +      +      
Sbjct: 113 PEVTIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGTESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+          K+  D       F    + 
Sbjct: 161 AAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCP------MTKEEYDR------FANALVH 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N E        I+  A        +GP     +E+   + G+     + 
Sbjct: 209 AETAEMH-GFENSEVFE-GCMPIEVMAARGAKTMLFGPLKPVGLENP--KDGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  
Sbjct: 265 LRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M  
Sbjct: 325 SYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +T+                    +P NA   L P   G K+    ER +K   + + + 
Sbjct: 384 YITTTDAKH--------------FQPMNASFALIPGLEGKKIRNKRERHEKISERGLADL 429

Query: 472 NFLRSL 477
              ++ 
Sbjct: 430 AAFKAE 435


>gi|520754|gb|AAA22764.1| putative [Bacillus subtilis]
          Length = 363

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/397 (24%), Positives = 142/397 (35%), Gaps = 55/397 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L           H T     + C+ ++        
Sbjct: 6   VNVIGAGLAGSEAAWQLAKRGIQVKLYEMRPVKQTPAHHTDKFAELVCSNSLRSNTLANA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD  +   AD                  G     DR  +  ++   + + 
Sbjct: 66  VGVLKEEMRALDSAIIAAADEC------------SVPAGGALAVDRHEFAASVTNRVKNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI  EV        II             +T  LT+ +    +  +          
Sbjct: 114 PNVTVINEEVTEIPEGPTII-------------ATGPLTSESLSAQLKELTGEDYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F  +R        + + 
Sbjct: 161 AAAPIVEKDSLDMDKVYLKSRYDKGEAAYL-----NCPMTEEEF--DRFHEALTSAETVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  I         ++       A        +GP     +E  +   G+R    + 
Sbjct: 214 LKEFEKEIFFEGCMPIEVM-------AKRGKKTMLFGPMKPVGLEHPV--TGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + ++ IPGLE V I+R G      +IN P  L P
Sbjct: 265 LRQDDAAGTLYNIVGFQTHLKWGDQKEVLKLIPGLENVEIVRYGVMHRNTFINSPSLLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
           T + K  S LF AGQ+ G  GY E+AA GLVAGIN+A
Sbjct: 325 TYQFKNRSDLFFAGQMTGVEGYVESAASGLVAGINAA 361


>gi|118578966|ref|YP_900216.1| tRNA (uracil-5-)-methyltransferase Gid [Pelobacter propionicus DSM
           2379]
 gi|205830314|sp|A1ALD8|TRMFO_PELPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|118501676|gb|ABK98158.1| gid protein [Pelobacter propionicus DSM 2379]
          Length = 454

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 169/484 (34%), Gaps = 55/484 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALD 66
           +IG G AGCEAA  AA+ G S  L   K          P +  L   + +R     +A+ 
Sbjct: 7   IIGAGLAGCEAAWQAARRGVSVTLHEMKPEKRSPAHHLPGLAELVCSNSLRGDSLENAVG 66

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +     +        + PA  G     DR+L+   +  +I +   ++++ GE+  
Sbjct: 67  LLKEELRRGGSLIMEAAEATRVPA--GGALAVDRQLFSDYVTAKITAHPLINLVHGEMDA 124

Query: 127 FNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              E  +I  S  +  D      +++   TG  L                  +P  +  +
Sbjct: 125 IPAEGTVIIASGPLTSDAL---AASLSGLTGDRL------------YFYDSIAPIVTADS 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R   G         +      +Q+  +  +      +K+  R+ E  +  
Sbjct: 170 LDREKVFAASRYGKGDGD----DYLNCPLDREQY--QAFVEQLNRGEKVAAREFEKLVHF 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A    D   +GP     + D   R G      I L  E     +
Sbjct: 224 EGCMPVE-------ELAGRGEDTLRFGPMKPVGLTDP--RTGIEPHAVIQLRAENREKTM 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  RTIPGLE+   +R G      +IN P  L PT + +    +
Sbjct: 275 YNLVGFQTKLTWPEQRRIFRTIPGLERAEFVRLGSMHRNTFINAPALLQPTQQLRSDPRI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+A  G +AGI +AR    +        ++ +G ++  +T+  V   
Sbjct: 335 FFAGQITGVEGYVESAGSGFLAGITAARLLTGMPDPAVPPAETALGALVSHITNADVRH- 393

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                         +P N +  L P  ++     + R  R     +    L   L+ +  
Sbjct: 394 -------------FQPMNVNYGLFP-DLEGRIKKKER--RGKLAERALASLSGWLERVSP 437

Query: 484 TSKN 487
            S+ 
Sbjct: 438 PSRE 441


>gi|319947070|ref|ZP_08021304.1| tRNA:M(5)U-54 methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319747118|gb|EFV99377.1| tRNA:M(5)U-54 methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 466

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/499 (20%), Positives = 166/499 (33%), Gaps = 87/499 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           ++++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ 
Sbjct: 22  VMSQSY-INVIGAGLAGSEAAFQIAQQGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLR 80

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  L  ++   A+A  +              G     DRE +   +
Sbjct: 81  GDSLTNAVGLLKEEMRRLGSVILEAAEATRV------------PAGGALAVDREGFASRV 128

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             ++     ++VI+ E+    T+   +  +  +  D    +   +    G +        
Sbjct: 129 TEKVSQHPLIEVIRDEITELPTDAITVVATGPLTSDALAEKIHVLNGGDGFYFYD----- 183

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A  + D  +  +   ++K      R   G  A L+          KQ        
Sbjct: 184 ----AAAPIIDVNTVDMNKVYLK-----SRYDKGEAAYLNCP------MTKQEF------ 222

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    +   +    +     E +      I+  A        YGP     +E      
Sbjct: 223 MDFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYK 280

Query: 286 GER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           G R          + L  +     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 281 GPRDGEFKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGV 340

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                Y++ P  L  T  +KK + LF AGQ+ G  GY E+AA GLVAGIN+AR     + 
Sbjct: 341 MHRNSYMDSPNLLEQTYRSKKQANLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEA 400

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
             F  T + IG +   +T                               P+ +  G I E
Sbjct: 401 SVFPETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKE 436

Query: 459 RRQKRFAKYIQEYNFLRSL 477
               R     + Y  +   
Sbjct: 437 LEGPRVRDKKERYEKIAER 455


>gi|323351567|ref|ZP_08087221.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis VMC66]
 gi|322122053|gb|EFX93779.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis VMC66]
          Length = 444

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/505 (21%), Positives = 170/505 (33%), Gaps = 88/505 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSLSY-INVIGAGLAGSEAAYQIAKSGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +  T+    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDTLAEKIHTLNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMSKVYLK-----SRYDKGDAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL-LKSLVL 483
              R     + Y  +    LK L  
Sbjct: 416 EGPRIRDKKERYEKIAERALKDLQF 440


>gi|332981424|ref|YP_004462865.1| gid protein [Mahella australiensis 50-1 BON]
 gi|332699102|gb|AEE96043.1| gid protein [Mahella australiensis 50-1 BON]
          Length = 440

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 164/491 (33%), Gaps = 87/491 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AG EAA   A+ G    L           H T     + C+ ++        
Sbjct: 4   VNVIGAGLAGSEAAWQIAQRGIDVNLFEMRPVHMTPAHTTDRFAELVCSNSLRSDRLENA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   I              G     DRE +   +   + S 
Sbjct: 64  VGLLKEEMRRLNSIIMIAADRCRI------------PAGGALAVDREGFSSFITDTLCSH 111

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVI-----HIGKL 167
            +++V++ EV     +   +  +  +  D   +    +   TG             +   
Sbjct: 112 PHINVMRREVDDIADDGITVIATGPLTSD---VLAQRISAITGRHYLYFYDAVAPIVMYD 168

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            I   +   S      N ++    D  + +      ++ +T      +KQ   E  +P  
Sbjct: 169 TIDTNKAFKSSRYGRGNDYINCPMDKEQYERFWSELVNAQTAPLKDFDKQILFEGCMPIE 228

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
            M                               A    D   +GP     IE +    G 
Sbjct: 229 EM-------------------------------ARRGKDTLRFGPLKPVGIEVE----GY 253

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +     +    G  T L    Q +  R IPGL     +R G      YI+
Sbjct: 254 RPYAVVQLRQDNAEGTLYNMVGFQTHLKWGEQQRVFRLIPGLGNAEFVRYGVMHRNTYIH 313

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L PT + +    +  AGQI G  GY E+A+ GLVAGIN+A  +     + F   D+
Sbjct: 314 SPHLLLPTYQLRDKPNILFAGQITGVEGYVESASSGLVAGINAALLAVGRKPLVFPA-DT 372

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFA 465
            IG +   ++     +               +P NA+   + P+  ++    +R Q    
Sbjct: 373 AIGSLAAYVSMYAGND--------------FQPMNANFGIMPPLSQRIKNKQQRNQAIAQ 418

Query: 466 KYIQEYNFLRS 476
           + +Q    L S
Sbjct: 419 RALQALEDLIS 429


>gi|319783207|ref|YP_004142683.1| gid protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169095|gb|ADV12633.1| gid protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 469

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/495 (19%), Positives = 168/495 (33%), Gaps = 65/495 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           + +IGGG AG EAA  AA+ G    L   +           ++  L   +  R  DA   
Sbjct: 6   IHIIGGGLAGSEAAWQAAQAGVPVILHEMRPVRGTDAHKTDSLAELVCSNSFRSDDADNN 65

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +  A  +     +  + PA  G     DR+ +  A+ +++ +   + + + E
Sbjct: 66  AVGLLHAEMRLAGSLIMSAGDANQVPA--GGALAVDRDGFADAVTKKLEAHPLITIRREE 123

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG-------VIHIGKLKIPAG--- 172
           V G        + +      +     ++   TG            +IH   + +      
Sbjct: 124 VPGLPPTDWDQTIVATGPLTAPGLAQSIAEATGADALAFFDAIAPIIHFDTIDMNTCWFQ 183

Query: 173 -RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R            ++    D  +      A +DG+   + + E     +  +P   M +
Sbjct: 184 SRYDKVGPGGTGKDYINCPMDKDQYLAFVQALVDGQKTEFKQWEGTPYFDGCLPIEIMAE 243

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +                                 +   YGP     + +       +   
Sbjct: 244 R-------------------------------GVETLRYGPMKPMGLTNAHNPTV-KAYA 271

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  RTIPGLE  +  R G      YIN P  
Sbjct: 272 VVQLRQDNALGTLYNMVGFQTKLKHAEQVRIFRTIPGLENADFARLGGLHRNTYINSPTL 331

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  +L+ K   GL  AGQI G  GY E+AA GL+AG  +A +   L       T ++ G 
Sbjct: 332 LDASLQLKSRPGLRFAGQITGCEGYVESAAIGLLAGRFAAAERLGLAPSLPPLTTAF-GA 390

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKR 463
           +++ +T   ++      +     + S +P N +  L P        G ++    +   KR
Sbjct: 391 LLNHITGGHIV------SDDEPGKRSFQPMNVNFGLFPPVEAPKAEGKRMRGKDKTVAKR 444

Query: 464 FAKYIQEYNFLRSLL 478
            A   +     R  L
Sbjct: 445 HAITSRAQADCREWL 459


>gi|304404237|ref|ZP_07385899.1| gid protein [Paenibacillus curdlanolyticus YK9]
 gi|304347215|gb|EFM13047.1| gid protein [Paenibacillus curdlanolyticus YK9]
          Length = 439

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/485 (20%), Positives = 164/485 (33%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA   A  G    L           H T     + C+ ++   G    
Sbjct: 7   VTVVGAGLAGSEAAWQIASQGVPVTLYEMRPVTRTPAHHTDKFAELVCSNSLRANGLANA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD L+   AD            +     G     DR+ +   + R +   
Sbjct: 67  VGVLKEEMRALDSLILGSAD------------RNAVPAGGALAVDRDGFSGEVTRLLREH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V   E+     +  ++             +T  LT  +  +G+  +   +      
Sbjct: 115 PLIEVRNEELTAIPEDGIVVI------------ATGPLTAPSLSQGIQALLGEEYFYFYD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L         TE++F            +K  
Sbjct: 163 AAAPIIEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--NIFHEALTTAEKAE 215

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  +         I+       A        +GP     + +     G+     I 
Sbjct: 216 LKDFEKEVYFEGCMPIEIM-------ASRGKQTVLFGPMKPVGLINP--HTGKLPHAVIQ 266

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE    +R G      +IN P+ L  
Sbjct: 267 LRQDNAAGTLYNMVGFQTHLKWGEQKRVFSLIPGLENAEFVRFGVMHRNTFINSPRLLRS 326

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K    LF AGQ+ G  GY E+AA GL+AG+N+ R +  L+ +      + +G M  
Sbjct: 327 TYQFKARETLFFAGQMTGVEGYVESAASGLIAGLNAGRLARGLEPVELPADTT-LGSMAQ 385

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                    +P NA+  L  P+  ++    E+ +    + +    
Sbjct: 386 YITTADFKH--------------FQPMNANFGLFPPLEKRMKSKKEKNEAIANRALASLE 431

Query: 473 FLRSL 477
             ++ 
Sbjct: 432 QFKNE 436


>gi|262282244|ref|ZP_06060012.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sp.
           2_1_36FAA]
 gi|262261535|gb|EEY80233.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus sp.
           2_1_36FAA]
          Length = 444

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 167/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKLTPQHKTTDFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVSNHPLVEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  ++K   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSRKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|313638167|gb|EFS03423.1| tRNA:M(5)U-54 methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 434

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 165/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA     K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEATWQLVKRGVEVDLYEMRPMKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD A                G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAADRA------------SVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTIHTEEVTAIPAGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M+  +   R   G  A L+       + E +   E L+      +   
Sbjct: 160 AAAPIIEKDSIDMEKVYLKSRYDKGEAAYLNCPM---SEEEFKAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKDFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVFSMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + I F + ++ IG +  
Sbjct: 324 TYQLKSRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELIIFPK-ETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELASKIRAKQERNEKLAERALNAIK 428


>gi|227893506|ref|ZP_04011311.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus ultunensis
           DSM 16047]
 gi|227864676|gb|EEJ72097.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus ultunensis
           DSM 16047]
          Length = 438

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 170/487 (34%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+ V + E+     E   I             +T  LT+      +            
Sbjct: 112 MDNVTVHEEEITEIPQEGITII------------ATGPLTSDALAEQIQKFSGSDSLHFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G  A L         +++Q+         F  + I
Sbjct: 160 DAAAPIVAADSIDMDIVYKKSRYDRGEAAYL-----NCPMSKEQY-------EKFAHELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                +      N +        I+  A        +GP     +ED     G+     +
Sbjct: 208 NAETAQLH-GFENSDVFE-GCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGKTPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  L 
Sbjct: 264 QLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDILT 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F + D+ +G M 
Sbjct: 324 ASYEAKKQPGLFFAGQMTGVEGYVESAGSGLVAGINAAREAMGEETVAFPK-DTALGSMA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
           + +T           T+ A++    +P NA   L P   G K+    ER +K   + +  
Sbjct: 383 NYVT-----------TTSAKH---FQPMNASFALLPALEGKKIRKKRERHEKVSERGLAS 428

Query: 471 YNFLRSL 477
            +  ++ 
Sbjct: 429 LDKFKAE 435


>gi|322389588|ref|ZP_08063137.1| tRNA:M(5)U-54 methyltransferase [Streptococcus parasanguinis ATCC
           903]
 gi|321143714|gb|EFX39143.1| tRNA:M(5)U-54 methyltransferase [Streptococcus parasanguinis ATCC
           903]
          Length = 444

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAQQGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DRE +   + 
Sbjct: 60  DSLTNAVGLLKEEMRRLGSVILEAAEATRV------------PAGGALAVDREGFASRVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            ++     ++VI+ E+    T+   +  +  +  D    +   +    G +         
Sbjct: 108 EKVSQHPLIEVIRDEITELPTDAITVVATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTVDMNKVYLK-----SRYDKGEAAYLNCP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  + +   +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNVAASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK + LF AGQ+ G  GY E+AA GLVAGIN+AR     +  
Sbjct: 320 HRNSYMDSPNLLEQTYRSKKQANLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAA 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T S IG +   +T                               P+ +  G I E 
Sbjct: 380 IFPETTS-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 EGPRIRDKKERYEKIAER 433


>gi|322411755|gb|EFY02663.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 448

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 164/492 (33%), Gaps = 86/492 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  ++  E+ + 
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAESVTAELKNH 116

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+         +  +  +  D    +   +    G +             A 
Sbjct: 117 PLIEVIRDEITAIPNNAITVIATGPLTSDALAEKIHALNGGDGFYFYD---------AAA 167

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D  +  +   ++K      R   G  A L+               E  + F     +
Sbjct: 168 PIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH----E 208

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E  +     E +      I+  A        YGP     +E      G R    
Sbjct: 209 ALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRDGEF 268

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +     +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 269 KTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 328

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T ++     LF AGQ+ G  GY E+AA GLVAGIN+AR     + + F +T 
Sbjct: 329 DSPNLLTETFQSCSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAMVFPQTT 388

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +T                               P+ +  G I E    R  
Sbjct: 389 A-IGSLPHYVTHAESK-----------------------HFQPMNVNFGIIKELEGPRIR 424

Query: 466 KYIQEYNFLRSL 477
              + Y  + S 
Sbjct: 425 DKKERYEAIASR 436


>gi|313901985|ref|ZP_07835401.1| gid protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467774|gb|EFR63272.1| gid protein [Thermaerobacter subterraneus DSM 13965]
          Length = 457

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 159/456 (34%), Gaps = 70/456 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V VIGGG AG EAA   A+ G    L           H T  +  + C+ ++ G      
Sbjct: 5   VTVIGGGLAGSEAAWQVARRGIPVRLYEMRPVKSTPAHHTGQLAELVCSNSLRGNQLDQA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA+ I              G     DRE +   +   I + 
Sbjct: 65  PGLLKEEMRRLGSLIMAAADASAI------------PAGSALAVDREEFARRVTEAITAH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ EV     E  +I             +T  LT+    + +      +  A   
Sbjct: 113 PLIEVVREEVTEPPAEGPVII------------ATGPLTSDALSKWIRSFTGEEYLAFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGT-PARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
             +P  +  +  +   F   R   G+    L+          +Q   E         +K 
Sbjct: 161 AAAPIVTYESLDLSKLFRASRYDKGSGDDYLNSP------MTRQEY-EAFWQALVEAEKH 213

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                E G+                  A    D   YGP     + D   R G+     +
Sbjct: 214 VPHDFEQGLFFEGCLPIE-------EMARRGPDTLRYGPLKPVGLVDP--RTGKEPYAVV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T+L    Q +  R IPGLE     R G      +I +PK L 
Sbjct: 265 QLRRDNRYGTLYNLVGFQTSLKWGEQKRVFRMIPGLENAEFARYGVMHRNTFICSPKVLK 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           PT++ +K   LF AGQI G  GY E+AA G+VAGIN+AR     + + F    ++ G + 
Sbjct: 325 PTMQARKRPDLFFAGQITGVEGYIESAATGIVAGINAARLVRGEEPVAFPAETAH-GALT 383

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             +T                     +P N    L P
Sbjct: 384 RYITEAHPDH--------------FQPMNIAFGLLP 405


>gi|86607297|ref|YP_476060.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. JA-3-3Ab]
 gi|123504911|sp|Q2JRF7|TRMFO_SYNJA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86555839|gb|ABD00797.1| gid protein [Synechococcus sp. JA-3-3Ab]
          Length = 451

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/476 (22%), Positives = 163/476 (34%), Gaps = 71/476 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG----LG 54
           + V+GGG AG EAA   A+LG    L           H T  +G + C+ + G       
Sbjct: 14  IHVVGGGLAGTEAAWQIAQLGVPVILSEMRPVRQSPAHHTDQLGELVCSNSFGALASDRA 73

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   AD   +              G     DR  +  A+   I + 
Sbjct: 74  AGLLKEELRQLGSLVIATADRHAV------------PAGGALAVDRARFSQALTEAIANH 121

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + EV G              +   + C T  LT+    + +     L+  +   
Sbjct: 122 PLITLRREEVTGIP------------EGIAVLC-TGPLTSEPLAKALQAFTGLEYLSFFD 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP  +  +      F   R   G  A L+       + E+           F    + 
Sbjct: 169 ASSPIVTGDSLNRAVVFQASRYDKGEAAYLNCPMTEA-EYER-----------FCQALVE 216

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+                  I+  A    D   +GP     + D   R G R    + 
Sbjct: 217 AEQVPLKDFEKEERKFFEGCLPIEEMARRGKDTLRFGPLKPVGLVDP--RTGSRPYAVVQ 274

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q +  R IPGLE    +R G      ++N P+ L P
Sbjct: 275 LRQEDRAGKLWNLVGFQTNLKWGEQQRVFRLIPGLEAAEFVRFGVMHRNTFLNSPQLLLP 334

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ ++   L  AGQ+ GT GY  A A G +AG N+AR +  L  I     ++ +G +  
Sbjct: 335 TLQFRRRPTLLAAGQLVGTEGYACAVAGGWLAGQNAARLALGLPLITLPP-ETMMGSLFQ 393

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKY 467
            ++S                    +P  A+  L P   G K+    + R  R+   
Sbjct: 394 FISSADPKH--------------FQPMPANFGLLPELEGQKVR-SKQERYARYRDR 434


>gi|217967907|ref|YP_002353413.1| gid protein [Dictyoglomus turgidum DSM 6724]
 gi|254789172|sp|B8E2F5|TRMFO_DICTD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|217337006|gb|ACK42799.1| gid protein [Dictyoglomus turgidum DSM 6724]
          Length = 439

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 116/485 (23%), Positives = 176/485 (36%), Gaps = 69/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IGGG AG EAA   AK      +           HKT  +  + C+ +         
Sbjct: 4   VKIIGGGLAGSEAAWQLAKRKIPVEIYEMRPIVTTPVHKTEYLAELVCSNSFKSTEITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVA+   +              G     DREL+   +Q  +L  
Sbjct: 64  SGLLKEEMRKLDSLLLRVAEETRV------------PAGVALAVDRELFSKRVQEILLES 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ EV     E  +I             +T  LT+  F   ++ +          
Sbjct: 112 PYVTVIREEVKKLPKEGIVIV------------ATGPLTSSDFAEHLMEVLDTDSLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +   +  F   R   G    L+      ++ E+           F+ + I 
Sbjct: 160 AVSPIIYADSINYEKVFSASRYGKGEETYLNCPMTK-EEYER-----------FVEELIN 207

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
              +E        E        I+  A    D   YGP     + D   + G+     + 
Sbjct: 208 AETVESH--YPGEEKFFEGCLPIEVLAKRGIDTLRYGPMKPIGLIDP--KTGKEPYAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L PE +   +    G  T L  + Q +  R IPGLE     R G      Y   PK L  
Sbjct: 264 LRPENIQKTLYSMVGFQTRLKFQEQRRIFRMIPGLENAEFARYGVMHRNTYFYAPKFLKA 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+  K   +F AGQ+ G  GY E+AA G+VAGIN+AR       I    T + IG +I 
Sbjct: 324 TLQFIKDERVFFAGQLIGVEGYMESAAMGIVAGINAARLYKGKPLIILPPT-TMIGALIS 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYN 472
            +T+K    P R +          +P NA+   L P+   +     R +    + +++  
Sbjct: 383 YVTTKV---PVRYY----------QPMNANWGILLPLDKPIKDKKLRNRLLAERALRDLE 429

Query: 473 FLRSL 477
            +   
Sbjct: 430 DVIRR 434


>gi|218295704|ref|ZP_03496500.1| gid protein [Thermus aquaticus Y51MC23]
 gi|218243863|gb|EED10390.1| gid protein [Thermus aquaticus Y51MC23]
          Length = 444

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 111/489 (22%), Positives = 181/489 (37%), Gaps = 76/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           V V+GGG AG EAA    ++G    L   +               + C+ ++GG G    
Sbjct: 4   VNVVGGGLAGSEAAWTLLRMGVPVRLFEMRPKRMTPAHATDRFAEIVCSNSLGGEGETQA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+  L  L+   A+AA +              G     DRE++   +   + + 
Sbjct: 64  KGLLQAEMRLLGSLVMEAAEAARV------------PAGGALAVDREVFSGFITERLQAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             L+V++ EV                +   +   T  LT+      +         A   
Sbjct: 112 PLLEVVREEVREIP------------EGLTVLA-TGPLTSEALAEALKRRFGDHFLAYYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF--ADERLIPFSFMTDK 232
             SP     +  +   F  GR             +    TE+++    E L+     T  
Sbjct: 159 AASPIVLYESIDLSKCFRAGRYDQ------SADYLNCPMTEEEYRRFYEALVAAERHTPH 212

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                        NL+     +  ++           YGP     ++D   R G+     
Sbjct: 213 E----------WENLQYFEACV-PVEELGRRGYQTLLYGPMKPVGLKDP--RTGKEPFAV 259

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L
Sbjct: 260 VQLRQEDKEGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLL 319

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL+ K+  GLF AG + G  GY E+AA G +AG+N+AR+   L+ +      S +G +
Sbjct: 320 RETLDFKEAEGLFAAGVLAGVEGYLESAATGFLAGLNAARRVLGLEPLVPPE-ASMLGGL 378

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +  L            T+  E   + +P NA+  L P  ++     E+RQ  + + ++ +
Sbjct: 379 VRFL-----------ATANPE---NFQPMNANWGLVP-PVEGRGKKEKRQAMYRRGLEAF 423

Query: 472 NFLRSLLKS 480
               S LK 
Sbjct: 424 AQWLSALKP 432


>gi|303240292|ref|ZP_07326811.1| gid protein [Acetivibrio cellulolyticus CD2]
 gi|302592202|gb|EFL61931.1| gid protein [Acetivibrio cellulolyticus CD2]
          Length = 442

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 174/487 (35%), Gaps = 77/487 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           + VIG G AGCEAA   AK G    L           H   T   + C+ ++        
Sbjct: 5   INVIGAGLAGCEAAWQIAKRGIKVRLYEMKPQSYSPAHHLETYAELVCSNSLRSDQLENA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   ADA  +              G     DR  +   +   +   
Sbjct: 65  VGLLKEEMRLLDSIIMTCADATRV------------PAGGALAVDRSKFSQMVTDLMREN 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+++I  EV    T    +             ++  LT+    + ++ +   +      
Sbjct: 113 ENIEIINEEVKDIPTNGVTVV------------ASGPLTSEDLSKSLMSLIGEEYLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  S  +  M   +   R   GT   ++      ++ E               DK  
Sbjct: 161 AAAPIVSFESINMDKAYKAARYNRGTEDYINCPM---NREE--------------YDKFW 203

Query: 235 NRQIECGITRTNLETHRIIMENIKH---SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           N  I   +         ++ E        A    D   +GP     + D   + G     
Sbjct: 204 NELINAELAEVKDFEKEVVFEGCMPVETMAKRGVDTLRFGPLKPVGLVDP--KTGNEAYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      +IN PK 
Sbjct: 262 VVQLRQDNTEGTLFNIVGFQTRLKWPEQKRVFGLIPGLENAEFVRYGVMHRNTFINSPKV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  +   +K   L+ AGQ+ G  GY E+A+ GLVAGIN+A      + + F R+ + IG 
Sbjct: 322 LEASYRMRKYQNLYFAGQMTGVEGYVESASSGLVAGINAAMNFLGKEDVLFPRSTA-IGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           + + ++ + V +               +P N +  L   G+ +  I ++R+K F    + 
Sbjct: 381 LSNYISDQNVKD--------------FQPMNVNFGLME-GLNVR-IRDKRKKNFEIATRA 424

Query: 471 YNFLRSL 477
            N ++ +
Sbjct: 425 LNIIKDI 431


>gi|251797452|ref|YP_003012183.1| gid protein [Paenibacillus sp. JDR-2]
 gi|247545078|gb|ACT02097.1| gid protein [Paenibacillus sp. JDR-2]
          Length = 443

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 161/481 (33%), Gaps = 50/481 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++    VIVIG G AG EAA      G    L   +  T            L   + +R 
Sbjct: 1   MSVQQPVIVIGAGLAGSEAAWQIVSQGVPVILYEMRPETKTPAHHTKNFAELVCSNSLRA 60

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
               +A+  L   +     +     +    PA  G     DR+ +   + R +     ++
Sbjct: 61  NGLANAVGVLKEEMRRLNSLILGSADRHAVPA--GGALAVDRDGFSGEVTRLLHEHPLVE 118

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           V   EV     +  ++             +T  LT  +    + ++   +        +P
Sbjct: 119 VRTEEVTDIPEDSIVVI------------ATGPLTAPSLSEKIRNLLGEEYFYFYDAAAP 166

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                +  M   +   R   G  A L         TE++F  E         +    +  
Sbjct: 167 IIEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--EIFHEALTTAETAALKDF 219

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           E  +         ++       A        +GP     + +     G+     I L  +
Sbjct: 220 EKEVYFEGCMPIEVM-------ASRGKQTVLFGPMKPVGLVNP--HTGKLPHAVIQLRQD 270

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                +    G  T L    Q +    IPGLE    +R G      +IN P+ + PT + 
Sbjct: 271 NAAGTLYNMVGFQTHLKWGEQKRVFSLIPGLENAEFVRFGVMHRNTFINSPRVMEPTYQL 330

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K  S LF AGQ+ G  GY E+AA GL+AG N+AR +  L+ +      + +G M   +T+
Sbjct: 331 KNRSTLFFAGQMTGVEGYVESAASGLIAGFNAARLARGLEPLVLPEDTT-LGSMAHYITT 389

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                               +P NA+  L  P+  ++    E+ +    + +      + 
Sbjct: 390 ADFKH--------------FQPMNANFGLFPPLENRIRNKKEKNEAIANRALDSLERFKK 435

Query: 477 L 477
            
Sbjct: 436 E 436


>gi|329115799|ref|ZP_08244516.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parauberis NCFD
           2020]
 gi|326906204|gb|EGE53118.1| tRNA:m(5)U-54 methyltransferase [Streptococcus parauberis NCFD
           2020]
          Length = 444

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 167/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + +IG G AG EAA   AK G    L           HKTS    + C+ +  G
Sbjct: 1   MSQSY-INIIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTSNFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +   +              G     DRE Y  ++ 
Sbjct: 60  DSLTNAVGLLKEEMRRLDSIIMRAGEKHRV------------PAGGAMAVDREGYAESVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
            E+ +   ++VI+GE+     +   +  +  +  D    +   +    G +         
Sbjct: 108 TELENNPLIEVIRGEITEIPNDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+               E  + F
Sbjct: 162 ---AAAPIIDKSTIDMNKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAF 203

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +      E  +     E +      I+  A        YGP     +E      G
Sbjct: 204 H----EALTTAEEAPLNSFEKEKYFEACMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYSG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEFKTPYAVVQLRQDNAAGSLYNMVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEETFQSRANQNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEKV 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPSTTA-IGSLPYYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
             KR     + Y      
Sbjct: 416 EGKRIRDKKERYEAFAKR 433


>gi|325125941|gb|ADY85271.1| Glucose-inhibited division protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 439

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 170/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L   +   +           + C  ++        
Sbjct: 5   VTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + ADA                 G     DREL+   +  ++ S 
Sbjct: 65  VGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSKYVTDKLTSL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+    +E   +             +T  LT+ +    +      +      
Sbjct: 113 PEVIIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGAESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+          K+  D       F    + 
Sbjct: 161 AAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCP------MTKEEYDR------FANALVH 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N E        I+  A        +GP     +E+   + G+     + 
Sbjct: 209 AETAEMH-GFENSEVFE-GCMPIEVMAARGAKTLLFGPLKPVGLENP--KDGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  
Sbjct: 265 LRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M  
Sbjct: 325 SYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +T+                    +P NA   L P   G K+    ER +K   + + + 
Sbjct: 384 YITTTDAKH--------------FQPMNASFALIPGLEGKKIRNKRERHEKISERGLADL 429

Query: 472 NFLRSL 477
              ++ 
Sbjct: 430 AAFKAE 435


>gi|291295960|ref|YP_003507358.1| gid protein [Meiothermus ruber DSM 1279]
 gi|290470919|gb|ADD28338.1| gid protein [Meiothermus ruber DSM 1279]
          Length = 443

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 105/484 (21%), Positives = 179/484 (36%), Gaps = 70/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G +G EAA  AA+LGA   L           H+T     + C+ ++GG G    
Sbjct: 4   VHVIGAGLSGAEAAFTAARLGAQVRLYEMRPRRMTPAHQTGHFAELVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ A   L+ + AD            + PA  G     +RE +   + R + + 
Sbjct: 64  KGLLQAELRAAGSLVMQAAD----------HNRVPA--GGALAVEREGFSQEITRRLEAH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++V++ E+     +   +             +T  LT+      +  +   +      
Sbjct: 112 PNIEVVREELTRIPPDGITVL------------ATGPLTSDALAEHLRALLGDEFLGFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M+  +  GR             +     E+Q+   R         K T
Sbjct: 160 AAAPVVLGESINMEVVYRAGRYGQ------SADYLNCPLNEEQY--RRFYEVLSQARKHT 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             + E             I       A    D   +GP     + D   R G+     + 
Sbjct: 212 PHEWEKLEFFEGCMPIEEI-------ARRGFDTPRFGPMKPVGLPDP--RTGQEPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q   +++IPGLE   I+R G      Y+  P+ + P
Sbjct: 263 LRAEDRRGQMWSLVGFQTGLKWGDQKLVVQSIPGLENAEIVRYGVMHRNTYLCAPRLIEP 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ +    L ++G + G  GY E+AA G +AG+N+AR +   + +      + +G ++ 
Sbjct: 323 TLQFRAHPNLLVSGVLCGVEGYLESAATGFLAGLNAARLAQGQEALVPPE-ATMLGGLVR 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L S                  + +P NA+  L P  +  G   E+R + F + + E+  
Sbjct: 382 YLASANPD--------------NFQPMNANWGLVPAEVGKGKKSEKRARMFHRGLAEFRA 427

Query: 474 LRSL 477
             + 
Sbjct: 428 WLAR 431


>gi|225870565|ref|YP_002746512.1| protein Gid homolog [Streptococcus equi subsp. equi 4047]
 gi|254789177|sp|C0M6C7|TRMFO_STRE4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225699969|emb|CAW93937.1| protein Gid homolog [Streptococcus equi subsp. equi 4047]
          Length = 444

 Score =  259 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 166/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTHFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEELRRLDSIIMRAGEAHRV------------PAGGAMAVDREGYAKAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            E+ +   +++I+ EV    ++   +             +T  LT+ +    +  +    
Sbjct: 108 AELENHPLIEIIREEVIDIPSDAITVI------------ATGPLTSDSLAEKIHALNGGA 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P        M   +   R   G  A L+               E  + F  
Sbjct: 156 GFYFYDAAAPIVDKSTINMDRVYLKSRYDKGEAAYLNCPMTK----------EEFMAFH- 204

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              +      E  +     E +      I+  A        YGP     +E      G R
Sbjct: 205 ---EALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ PK L    +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F
Sbjct: 322 NSYMDSPKLLTQGFQSRANHRLFFAGQMTGVEGYVESAASGLVAGINAARLFKEEEPLVF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PNTTA-IGSLPYYITHADSK-----------------------HFQPMNVNFGIIKELDG 417

Query: 462 KRFAKYIQEYNFLRSL 477
            R     + Y  +   
Sbjct: 418 PRIRDKKERYEAIAKR 433


>gi|13471167|ref|NP_102736.1| tRNA (uracil-5-)-methyltransferase Gid [Mesorhizobium loti
           MAFF303099]
 gi|26006771|sp|Q98LE1|TRMFO_RHILO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|14021911|dbj|BAB48522.1| glucose-inhibited division protein [Mesorhizobium loti MAFF303099]
          Length = 472

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 170/498 (34%), Gaps = 71/498 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + +IGGG AG EAA  AA+ G    L   +            +  L   +  R    E +
Sbjct: 6   IHIIGGGLAGSEAAWQAAQAGVPVVLHEMRPVRGTDAHKTDGLAELVCSNSFRSDDAENN 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +     +  + PA  G     DR+ +  A+ +++ +   + + + E
Sbjct: 66  AVGLLHAEMRLAGSLIMSAGDANQVPA--GGALAVDRDGFSDAVTKKLEAHPLISIQREE 123

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG-------VIHIGKLKIPAG--- 172
           V+G        + I      +     ++   TG            +IH   + +      
Sbjct: 124 VSGLPPADWDQAIIATGPLTAPSLARSIAEATGADALAFFDAIAPIIHFDTIDMDTCWFQ 183

Query: 173 -RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R            ++    D  +      A +DG+   + + E     +  +P   M +
Sbjct: 184 SRYDKVGPGGTGKDYINCPMDKDQYLAFVQALIDGQKTEFKQWEGTPYFDGCLPIEIMAE 243

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED---KIVRFGER 288
           +                                 +   YGP     + +    +V    +
Sbjct: 244 R-------------------------------GVETLRYGPMKPMGLTNAHNPMV----K 268

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +  RTIPGLE  +  R G      YIN 
Sbjct: 269 AYAVVQLRQDNALGTLYNMVGFQTKLKHAEQVRVFRTIPGLENADFARLGGLHRNTYINS 328

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L  +L+ K   GL  AGQI G  GY E+AA GL+AG  +A +           T ++
Sbjct: 329 PTLLDQSLQLKSRPGLRFAGQITGCEGYVESAAIGLLAGRFAAAERLGQAPSLPPLTTAF 388

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERR 460
            G +++ +T   ++      +     + S +P N +  L P        G +L    +  
Sbjct: 389 -GALLNHITGGHIV------SDDEPGKRSFQPMNVNFGLFPPVEAVKIEGKRLRGKDKTV 441

Query: 461 QKRFAKYIQEYNFLRSLL 478
            KR A   +     R  L
Sbjct: 442 AKRHAITSRALGDCRQWL 459


>gi|302389649|ref|YP_003825470.1| gid protein [Thermosediminibacter oceani DSM 16646]
 gi|302200277|gb|ADL07847.1| gid protein [Thermosediminibacter oceani DSM 16646]
          Length = 437

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 175/486 (36%), Gaps = 69/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIGGG AGCEAA   A +G    L           H T  +  + C+ ++        
Sbjct: 4   VKVIGGGLAGCEAAWYIANMGFKVELYEMRPVRSTPAHHTDKLAELVCSNSLRSNELTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ + A+                  G     DRE +  A+   I   
Sbjct: 64  AGLLKEEMRLLGSLIIKKAEE------------NSVPAGAALAVDREKFSSAVTSAIQEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V + EV        II             +T  LT+ +  + +  +   +      
Sbjct: 112 PLIEVCRKEVDHIPEPPAII-------------ATGPLTSDSLSKAISQLLGKEYLYFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      F   R   G     D   +    TE+++         F  + I 
Sbjct: 159 AAAPIITADSIDWNIAFWGSRYNKG-----DEDYVNLPMTEEEY-------MEFYNELIN 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                  +              I+  A        +GP     I D   R G++    + 
Sbjct: 207 AEVHP--LKEFEKPVFFEGCMPIEVMARRGPKTLLFGPLKPVGIIDP--RTGKQPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  E     +    G  T+L    Q +    IPGL+    +R G+     +I +PK + P
Sbjct: 263 LRKENREGTLFNIVGFQTSLKWPEQKRVFSKIPGLKDPEFVRYGFIHRNTFIMSPKFMQP 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            LE K  SGLF AGQI G  GY E+AA G+VAG+N  R+   LD I F   ++ +G +  
Sbjct: 323 WLELKTTSGLFFAGQITGVEGYIESAASGIVAGVNMVRRLKGLDPITFPL-ETVVGSLCH 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +TS    +P      +A + I          L P+  K+    ER  +   + I+    
Sbjct: 382 YITS---ADPKNFQPMKANFGI----------LPPLEEKVKSKKERNHRLAQRSIKILRE 428

Query: 474 LRSLLK 479
             ++ K
Sbjct: 429 FIAVNK 434


>gi|295426273|ref|ZP_06818933.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295064012|gb|EFG54960.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 438

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 108/488 (22%), Positives = 170/488 (34%), Gaps = 75/488 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIGGG AG EA    AK G    L           H T     + C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQIAKRGIPVDLYEMRPRKMTPAHHTGEFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD                  G     DR+L+   + +++ S 
Sbjct: 65  VGLLKEEMRQLDSLIMQAADKT------------QVPAGGALAVDRDLFSDYVTKKLRSF 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +N+ V   E+     E  ++  +  +  D      S +   +GT     +H         
Sbjct: 113 DNVTVHDEEITEIPKEGIVVIATGPLTSDAL---ASQIQKFSGT---DSLHFFDAA---- 162

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  +  +  M   +   R   G  A L+               ++     F  + 
Sbjct: 163 ----APIVAADSIDMNIVYKKSRYDRGEAAYLNCPM------------DKEQYEKFAQEL 206

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +     E      N +        I+  A        +GP     +ED   + G+     
Sbjct: 207 VHAETAEMH-GFENNDVFD-GCMPIEVMAARGAKTMLFGPLKPVGLEDP--KTGKTPYAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKEL 351
           + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P+ L
Sbjct: 263 VQLRQDNAAASMYNLVGFQTHLKYGEQKRVFSLIPGLENARFVRYGKMHRNTYMASPEVL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             + E K+  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   D   F   D+ +G M
Sbjct: 323 NASYEAKQQKGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGKDTAVFPV-DTALGSM 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQ 469
            + +T+                    +P NA   L P   G K+    ER  K   + + 
Sbjct: 382 ANYVTTTDAKH--------------FQPMNASFALLPSLEGKKIRNKKERHLKISERGLN 427

Query: 470 EYNFLRSL 477
                +  
Sbjct: 428 SLAAFKDK 435


>gi|301066448|ref|YP_003788471.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
 gi|300438855|gb|ADK18621.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei str. Zhang]
          Length = 439

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTSNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + +++ S  ++ V+  E+
Sbjct: 64  VGLLKEEMRQLHSIIIQSADATAVPA--GGALAVDREPFSELVTQKLTSNWHIHVVNEEL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           + F     ++             +T  LT     + ++ +      +     +P      
Sbjct: 122 SAFPDGITVV-------------ATGPLTAPGLAQAIVDLNGEAGLSFFDAAAPILDANT 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+                +    +F    ++    E     
Sbjct: 169 INEDIVYKKSRYDRGEAAYLNCPM------------TKDEFLAFYQALVSAEVAEGHDF- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   R G+     + L  +     +
Sbjct: 216 -EKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--RTGKEPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNMVGFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AGIN+AR +     + F  T +  G M   +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGINAARMALGETPLIFPETTAM-GSMAHYITHTSAHH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P NA+  + P + +K+    ER Q+   + +++    ++ +  + 
Sbjct: 391 -------------FQPMNANFGIMPALTVKIRNKKERNQQLADRALKDLATFQAGMNRVE 437


>gi|324991150|gb|EGC23084.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK353]
          Length = 444

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 166/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG EAA   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIVDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  A        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGEYKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF +GQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFSGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|317057710|ref|YP_004106177.1| gid protein [Ruminococcus albus 7]
 gi|315449979|gb|ADU23543.1| gid protein [Ruminococcus albus 7]
          Length = 440

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/434 (21%), Positives = 153/434 (35%), Gaps = 54/434 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIG----GLG 54
           V VIG G AGCEAA   A+ G    L   K               + C+ ++        
Sbjct: 5   VKVIGAGLAGCEAAWQLARAGIDVELFEMKPKKFTPAHKYKGFAELVCSNSLKADRVESA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  +    A+ A +              G     DRE +  A+   I + 
Sbjct: 65  AGMLKEEMRRLGSVTMECAEEARV------------SAGGALAVDREKFSDAVTERIRNN 112

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           E++ VI+ EV        II +  +  D       ++    G +L               
Sbjct: 113 EHITVIEEEVTEIPDGNVIIATGPLTSDGL---AESIGKLCGEYL------------YFH 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M+  F   R   G    ++      D+ E +     LI       K 
Sbjct: 158 DAAAPIVTFDSIDMEKAFFASRYGRGDADYINCPM---DREEYERFYNELINAESAPLKE 214

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            +++      +   + +      ++  A    D   +GP     + D   R  +R    +
Sbjct: 215 HDKE---HFAKDGFKVYE-GCMPVEVLAKRGEDTLRFGPLKPVGLRDP--RTDKRPWAVV 268

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E     +    G  T L    Q +    IPGLE    +R G      +IN PK L 
Sbjct: 269 QLRAENTAGSMYNLVGFQTNLKFGEQKRVFSLIPGLENAEFMRYGVMHRNTFINSPKLLN 328

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
                ++   L+ AGQ+ G  GY E+AA G+ AG+N AR+   L  +    T + +G + 
Sbjct: 329 EQFNMRERPSLYFAGQMTGVEGYIESAASGIFAGLNMARQIQGLSPVSLPET-TMLGALS 387

Query: 413 DDLTSKGV--LEPY 424
             ++S      +P 
Sbjct: 388 KYISSPDTENFQPM 401


>gi|225868565|ref|YP_002744513.1| protein Gid homolog [Streptococcus equi subsp. zooepidemicus]
 gi|259547965|sp|C0MFF9|TRMFO_STRS7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225701841|emb|CAW99295.1| protein Gid homolog [Streptococcus equi subsp. zooepidemicus]
          Length = 444

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 166/496 (33%), Gaps = 83/496 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   AK G    L           HKT+    + C+ +  G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTHFAELVCSNSFRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ R  +A  +              G     DRE Y  A+ 
Sbjct: 60  DSLTNAVGLLKEELRRLDSIIMRAGEAHRV------------PAGGAMAVDREGYAKAVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            E+ +   +++I+ EV    ++   +             +T  LT+ +    +  +    
Sbjct: 108 AELEAHPLVEIIREEVTDIPSDAITVI------------ATGPLTSDSLAEKIHALNGGA 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P        M   +   R   G  A L+               E  + F  
Sbjct: 156 GFYFYDAAAPIVDKSTINMDRVYLKSRYDKGEAAYLNCPMTK----------EEFMAFH- 204

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              +      E  +     E +      I+  A        YGP     +E      G R
Sbjct: 205 ---EALTTAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYKGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +     +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLEHAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ PK L    +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F
Sbjct: 322 NSYMDSPKLLTQGFQSRANHRLFFAGQMTGVEGYVESAASGLVAGINAARLFKEEEPLVF 381

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
             T + IG +   +T                               P+ +  G I E   
Sbjct: 382 PNTTA-IGSLPYYITHADSK-----------------------HFQPMNVNFGIIKELDG 417

Query: 462 KRFAKYIQEYNFLRSL 477
            R     + Y  +   
Sbjct: 418 PRIRDKKERYEAIAKR 433


>gi|116072996|ref|ZP_01470258.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
 gi|116068301|gb|EAU74053.1| glucose-inhibited division protein A [Synechococcus sp. RS9916]
          Length = 453

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 107/489 (21%), Positives = 163/489 (33%), Gaps = 74/489 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A  G    LI          H +S    + C+ + G       
Sbjct: 7   VVVIGAGLAGTEAAWQIANAGVKVRLIEMRPMKRSPAHHSSEFAELVCSNSFGALSSDRA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R AD   +              G     DR  Y  A+   +   
Sbjct: 67  AGLLQEELRRLGSLVIRTADTHAV------------PAGGALAVDRGRYSAALTAALEEH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + E         I         S      +   TG   R   H       A  +
Sbjct: 115 PLVTIERREQLSLPANDQITVLATGPLTSEALAEDLRGFTG---REDCHFFD---AASPI 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +  +F    +D G          D   I     ++Q+        +F    + 
Sbjct: 169 VEGESIDMDKAFRASRYDKG----------DADYINCPMNQEQY-------LAFREALLE 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E      +  T       I+  A    D   YGP     + D          VR  
Sbjct: 212 AEQAELKDFEKDSATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 271

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + +R IPGLE+   +R G      ++
Sbjct: 272 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRLIPGLEEAEFVRFGVMHRNTFL 331

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR +     +    T 
Sbjct: 332 EAPELLEPTLQFRRRERLLAAGQITGTEGYAAAVAGGWLAGTNAARLAKGQAPMTLPPT- 390

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
             IG +   ++                     +P   +  L P   +   I ++R++  A
Sbjct: 391 CMIGALTHFISEAPS--------------GKFQPMPPNFGLLPELPER--IRDKRRRYGA 434

Query: 466 KYIQEYNFL 474
              +  N L
Sbjct: 435 YRDRALNDL 443


>gi|332361199|gb|EGJ39003.1| tRNA:M(5)U-54 methyltransferase [Streptococcus sanguinis SK1056]
          Length = 444

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 165/498 (33%), Gaps = 87/498 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           ++ SY + VIG G AG E A   AK G    L           HKT+    + C+ ++ G
Sbjct: 1   MSSSY-INVIGAGLAGSEVAYQIAKRGIPVKLYEMRGVKSTPQHKTADFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  LD ++ + A+A  +              G     DRE +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLDSVILKSAEATRV------------PAGGALAVDREGFSQLVT 107

Query: 109 REILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             + +   ++VI+ E+     +   +  +  +  D    +   +    G +         
Sbjct: 108 ELVTNHPLIEVIREEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  +  +   ++K      R   G  A L+          KQ         
Sbjct: 162 ---AAAPIIDVNTIDMTKVYLK-----SRYDKGEAAYLNAP------MTKQEF------M 201

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
            F    +   +    +     E +      I+  +        YGP     +E      G
Sbjct: 202 DFHDALVNAEEAP--LNSFEKEKYFEGCMPIEVMSKRGIKTMLYGPMKPVGLEYPDDYQG 259

Query: 287 ER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
            R          + L  +     +    G  T L    Q +  + IPGLE    +R G  
Sbjct: 260 PRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVM 319

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR     + +
Sbjct: 320 HRNSYMDSPNLLEQTFRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEEAL 379

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
            F  T + IG +   +T                               P+ +  G I E 
Sbjct: 380 VFPETTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKEL 415

Query: 460 RQKRFAKYIQEYNFLRSL 477
              R     + Y  +   
Sbjct: 416 DGPRIRDKKERYEKIAER 433


>gi|318040166|ref|ZP_07972122.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CB0101]
          Length = 463

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/490 (22%), Positives = 160/490 (32%), Gaps = 74/490 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A  G    L+          H +S    + C+ + G       
Sbjct: 11  VLVIGAGLAGTEAAWQIASAGVPVRLVEMRPIRRSPAHHSSEFAELVCSNSFGALSSDRA 70

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R AD   +              G     DR  Y  A+   +   
Sbjct: 71  AGLLQEELRRLGSLVIRTADEHAV------------PAGGALAVDRGRYSAALTAALEQH 118

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + E         I         S      +   TG   R   H       A  +
Sbjct: 119 PLVTVERREHTELPRPGEIAVLATGPLTSEPLAEQLRAFTG---RADCHFFD---AASPI 172

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  L  +F    +D G          D   I     ++QF        +F    + 
Sbjct: 173 VEGESIDLSVAFRASRYDKG----------DADYINCPMNKEQF-------LAFREALLA 215

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E         T       I+  A    D   YGP     + D          VR  
Sbjct: 216 AEQAELKNFEKENATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 275

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            R    + L  E  +  +    G  T L    Q + +R IPGLE    +R G      ++
Sbjct: 276 NRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMIPGLENAEFVRFGVMHRNTFL 335

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR +   + +    T 
Sbjct: 336 EAPQLLDPTLQFRQRPTLLAAGQITGTEGYAAAVAGGWLAGTNAARLALGQEPLQLPST- 394

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           S IG +   +                      +P   +  L P   +   I ++R++  A
Sbjct: 395 SMIGALTHFIAEAPSE--------------KFQPMPPNFGLLPELPER--IRDKRRRYGA 438

Query: 466 KYIQEYNFLR 475
              +    L 
Sbjct: 439 YRDRALADLE 448


>gi|205830467|sp|Q11HD9|TRMFO_MESSB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 468

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 168/487 (34%), Gaps = 59/487 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-- 65
           + VIGGG AG EAA  AA+ G    L   +            +  L   +  R  DA   
Sbjct: 6   IHVIGGGLAGSEAAWQAAEAGVPVILHEMRPVRGTDAHKTDGLAELVCSNSFRSDDAQTN 65

Query: 66  --DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               L   +  A  +  R  +  + PA  G     DR+ +  A+ + I     + V++ E
Sbjct: 66  AVGLLHAEMRLAGSLIMRAGDANQVPA--GGALAVDRDGFSDAVTQAIHGHPLITVVREE 123

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG-------TFLRGVIHIGKLKIPAG--- 172
           VAG    +   + I      +      +   TG         +  ++H   + +      
Sbjct: 124 VAGLPPSEWDQTIIATGPLTAPSLAEAIRQETGAEALAFFDAIAPIVHFDTIDMDTCWFQ 183

Query: 173 -RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R   +        ++    +  + +    A LDG+   + + E     +  +P   M +
Sbjct: 184 SRYDKAGPGGTGKDYINCPMNKEQYQAFVQALLDGEKTAFKEWEGTPYFDGCLPIEVMAE 243

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +                                 +   +GP     + +   +  E+   
Sbjct: 244 R-------------------------------GPETLRHGPMKPMGLTNA-HKPDEKAYA 271

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  R IPGLE     R G      YIN P  
Sbjct: 272 VVQLRQDNALGTLYNMVGFQTKLKYAEQVRIFRMIPGLENAEFARLGGLHRNTYINSPAL 331

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL+ K   GL  AGQI G  GY E+AA GL+AG  +A        +    T ++ G 
Sbjct: 332 LDITLQLKSRPGLRFAGQITGCEGYVESAAMGLMAGRFAAAARLGRKMMPPPATTAF-GS 390

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +I  +T   +       +     + S +P N +  L P  ++L     +R +   K + +
Sbjct: 391 LISHITGGHI------LSEDEPGKRSFQPMNVNFGLFP-PVELPKPEGKRLRGKEKTLAK 443

Query: 471 YNFLRSL 477
              + + 
Sbjct: 444 KRAITAR 450


>gi|110634143|ref|YP_674351.1| tRNA (uracil-5-)-methyltransferase Gid [Mesorhizobium sp. BNC1]
 gi|110285127|gb|ABG63186.1| gid protein [Chelativorans sp. BNC1]
          Length = 493

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 168/487 (34%), Gaps = 59/487 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-- 65
           + VIGGG AG EAA  AA+ G    L   +            +  L   +  R  DA   
Sbjct: 31  IHVIGGGLAGSEAAWQAAEAGVPVILHEMRPVRGTDAHKTDGLAELVCSNSFRSDDAQTN 90

Query: 66  --DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               L   +  A  +  R  +  + PA  G     DR+ +  A+ + I     + V++ E
Sbjct: 91  AVGLLHAEMRLAGSLIMRAGDANQVPA--GGALAVDRDGFSDAVTQAIHGHPLITVVREE 148

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG-------TFLRGVIHIGKLKIPAG--- 172
           VAG    +   + I      +      +   TG         +  ++H   + +      
Sbjct: 149 VAGLPPSEWDQTIIATGPLTAPSLAEAIRQETGAEALAFFDAIAPIVHFDTIDMDTCWFQ 208

Query: 173 -RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R   +        ++    +  + +    A LDG+   + + E     +  +P   M +
Sbjct: 209 SRYDKAGPGGTGKDYINCPMNKEQYQAFVQALLDGEKTAFKEWEGTPYFDGCLPIEVMAE 268

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +                                 +   +GP     + +   +  E+   
Sbjct: 269 R-------------------------------GPETLRHGPMKPMGLTNA-HKPDEKAYA 296

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  R IPGLE     R G      YIN P  
Sbjct: 297 VVQLRQDNALGTLYNMVGFQTKLKYAEQVRIFRMIPGLENAEFARLGGLHRNTYINSPAL 356

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL+ K   GL  AGQI G  GY E+AA GL+AG  +A        +    T ++ G 
Sbjct: 357 LDITLQLKSRPGLRFAGQITGCEGYVESAAMGLMAGRFAAAARLGRKMMPPPATTAF-GS 415

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +I  +T   +       +     + S +P N +  L P  ++L     +R +   K + +
Sbjct: 416 LISHITGGHI------LSEDEPGKRSFQPMNVNFGLFP-PVELPKPEGKRLRGKEKTLAK 468

Query: 471 YNFLRSL 477
              + + 
Sbjct: 469 KRAITAR 475


>gi|332799165|ref|YP_004460664.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Tepidanaerobacter sp. Re1]
 gi|332696900|gb|AEE91357.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Tepidanaerobacter sp. Re1]
          Length = 446

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/512 (20%), Positives = 171/512 (33%), Gaps = 100/512 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----G 54
           V VIGGG AGCEAA   A+ G    L   +            +  + C+ ++        
Sbjct: 4   VNVIGGGLAGCEAAWHLAQNGIKVNLFEMRPIKTTPAHLTDKLAELVCSNSLRSNEITNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E+ A+  ++ +VAD   I              G     DREL+   +   I + 
Sbjct: 64  AGLLKQEMRAMGSIIMKVADMTSI------------PAGSALAVDRELFSSKVTELIKNH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNS-------------MIRCSTVVLTTGTFLRG 160
            N++    E+        II +  +  +                   +   + TG  L  
Sbjct: 112 PNIEFHIKEICEIPPTPAIIATGPLTSEGMSTALAELLKKEYLYFYDAAAPIITGESLD- 170

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
                       R            ++   F      T     ++ +T    + EK    
Sbjct: 171 ----WDKAFWGSRYNKGE-----ADYVNLPFTHDEYDTFYNELINAETYPLKEFEKPIFF 221

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
           E  +P   M                               A        +GP     I D
Sbjct: 222 EGCMPVEVM-------------------------------AKRGYKTLLFGPLKPVGIFD 250

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
                G++      L  E     +    G  T+L    Q +    IPG+ K   +R G+ 
Sbjct: 251 PA--TGKQPYAVAQLRKENAEGTLFNMVGFQTSLKWGEQKRVFGLIPGMGKAEFVRYGFI 308

Query: 341 IEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               +I +P  L PTLE K + GLF AGQI G  GY E+AA G+VAGIN  R   K+  I
Sbjct: 309 HRNTFIASPLYLKPTLEFKALRGLFFAGQITGVEGYIESAASGIVAGINMKRFIRKVGPI 368

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
                ++  G +++ +TS                  + +P  A+  + P       I   
Sbjct: 369 ALPL-ETMTGALLNFITSSSPE--------------NFQPMKANFGILPPLQND--IKSS 411

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           + K+     +  + +R  ++   + SK  + T
Sbjct: 412 KLKKILLSQRALDSIRQFIEYEKVFSKENNKT 443


>gi|284048586|ref|YP_003398925.1| gid protein [Acidaminococcus fermentans DSM 20731]
 gi|283952807|gb|ADB47610.1| gid protein [Acidaminococcus fermentans DSM 20731]
          Length = 438

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 168/491 (34%), Gaps = 75/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           + +IG G AGCEAA    + G                H T+    + C+ ++        
Sbjct: 3   IHIIGAGLAGCEAAWQLTRRGIPVIFHEMRPGKSDPAHHTALFSELVCSNSLRANNIENA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   ADA                 G     DRE +  A+   I   
Sbjct: 63  VGLLKEEMRRLDSLILAAADAH------------QVPAGGALAVDREGFAQAVTAAIREN 110

Query: 115 ENLDVIQGEVAG---FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             + +++ EV     F  E  +I+            ++  LT+G     +  + K     
Sbjct: 111 PLVTLVEEEVTDYSRFAPEDYVIT------------ASGPLTSGALSEAIQQLVKKDYFH 158

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  ++ +   +  +   R   G  A  +       +   +F  E     +    
Sbjct: 159 FFDAAAPIVTVDSLDQEKVYKASRYDKGEAAYYNCP--FTKEEYIRFWQELCRAETAPVK 216

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              +   E                 I+  A+   D   +GP     + D   R GE    
Sbjct: 217 DFEHNVFEA-------------CMPIEEMALRGEDTMRFGPLKPVGLPDP--RTGEDPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  R IPGLE    +R G   +  Y+N P  
Sbjct: 262 VVQLRQDNGAGTLYNIVGFQTHLKWPEQKRVFRMIPGLENAEFVRYGVMHKNSYLNSPLL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L P    ++    + AGQ+ G  GY E+AA GL AGI +AR       + F R ++ IG 
Sbjct: 322 LNPDYSLRERPHFYFAGQMTGVEGYVESAASGLAAGIYAARAMAGKPPVLFPR-ETAIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           +   +++  V                 +P N +  L     G ++    E+     A+ +
Sbjct: 381 LSHYISNPEVKH--------------FQPMNINFGLIAPWDGPRIRGKKEKNAAIAARSL 426

Query: 469 QEYNFLRSLLK 479
           +    +++ L 
Sbjct: 427 KFLEIVKNNLH 437


>gi|116514252|ref|YP_813158.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275016|sp|Q04A02|TRMFO_LACDB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116093567|gb|ABJ58720.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 439

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 170/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L   +   +           + C  ++        
Sbjct: 5   VTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + ADA                 G     DREL+   +  ++ S 
Sbjct: 65  VGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSRYVTDKLTSL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+    +E   +             +T  LT+ +    +      +      
Sbjct: 113 PEVIIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGAESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+          K+  D       F    + 
Sbjct: 161 AAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCP------MTKEEYDR------FANALVH 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N E        I+  A        +GP     +E+   + G+     + 
Sbjct: 209 AETAEIH-GFENSEVFE-GCMPIEVMAARGAKTLLFGPLKPVGLENP--KDGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  
Sbjct: 265 LRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M  
Sbjct: 325 SYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +T+                    +P NA   L P   G K+    ER +K   + + + 
Sbjct: 384 YITTTDAKH--------------FQPMNASFALIPGLEGKKIRNKRERHEKISERGLADL 429

Query: 472 NFLRSL 477
              ++ 
Sbjct: 430 AAFKAE 435


>gi|104774159|ref|YP_619139.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123251897|sp|Q1G9V1|TRMFO_LACDA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|103423240|emb|CAI98073.1| Glucose inhibited division protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 439

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 170/486 (34%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGL----G 54
           V VIG G AG EAA   AK G    L   +   +           + C  ++        
Sbjct: 5   VTVIGAGLAGSEAAWQLAKRGIKVDLYEMRPKKMTPAHESGNFAELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + ADA                 G     DREL+   +  ++ S 
Sbjct: 65  VGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSKYVTDKLTSL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+    +E   +             +T  LT+ +    +      +      
Sbjct: 113 PEVIIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGAESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M   +   R   G  A L+          K+  D       F    + 
Sbjct: 161 AAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCP------MTKEEYDR------FANALVH 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N E        I+  A        +GP     +E+   + G+     + 
Sbjct: 209 AETAEIH-GFENSEVFE-GCMPIEVMAARGAKTLLFGPLKPVGLENP--KDGKTPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     +    G  T L    Q +  + IPGLE    +R G      Y+ +P+ L  
Sbjct: 265 LRQDNAAASMYNIVGFQTHLKYGEQKRVFQMIPGLENARFVRYGKMHRNTYMASPEVLKA 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           + E KK  GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F  T + +G M  
Sbjct: 325 SYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGQETVEFPVTTA-LGSMAH 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQEY 471
            +T+                    +P NA   L P   G K+    ER +K   + + + 
Sbjct: 384 YITTTDAKH--------------FQPMNASFALIPGLEGKKIRNKRERHEKISERGLADL 429

Query: 472 NFLRSL 477
              ++ 
Sbjct: 430 AAFKAE 435


>gi|239631512|ref|ZP_04674543.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525977|gb|EEQ64978.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 439

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 170/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTSNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + +++ S  ++ V+  E+
Sbjct: 64  VGLLKEEMRQLHSIIIQSADATAVPA--GGALAVDREPFSELVTQKLTSNSHIHVVNEEL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           + F     ++             +T  LT     + ++ +      +     +P      
Sbjct: 122 SAFPDGITVV-------------ATGPLTAPGLAQAIVDLNGEAGLSFFDAAAPILDANT 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+              DE L  +  +         +     
Sbjct: 169 INEDIVYKKSRYDRGEAAYLNCPMTK---------DEFLTFYQALVSAEVAEGHDF---- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   R G+     + L  +     +
Sbjct: 216 -EKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--RTGKEPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNMVGFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     + F  T +  G M   +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGTNAARMALGETPLIFPETTAM-GSMAHYITHTSAHH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P NA+  + P + +K+    ER Q+   + +++    ++ +  + 
Sbjct: 391 -------------FQPMNANFGIMPALTVKIRNKKERNQQLADRALKDLATFQAGMNRVE 437


>gi|289434560|ref|YP_003464432.1| glucose inhibited division gid protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170804|emb|CBH27346.1| glucose inhibited division gid protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 434

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 165/480 (34%), Gaps = 71/480 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA     K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEATWQLVKRGIEVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD A                G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAADEA------------SVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV    T   II             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPTGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E +   E L+      +   
Sbjct: 160 AAAPIIEKESIDMNKVYLKSRYDKGEAAYLNCPM---SEEEFKAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKDFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KNGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE   I+R G      +IN P  L P
Sbjct: 264 LRQDDAAGSLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + I F + ++ IG +  
Sbjct: 324 TYQLKSRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELIIFPK-ETAIGSLAH 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T              +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 383 YIT--------------SASKKSFQPMNVNFGLFPELASKIRVKQERNEKLAERALNAIK 428


>gi|169350426|ref|ZP_02867364.1| hypothetical protein CLOSPI_01194 [Clostridium spiroforme DSM 1552]
 gi|169292746|gb|EDS74879.1| hypothetical protein CLOSPI_01194 [Clostridium spiroforme DSM 1552]
          Length = 434

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 172/475 (36%), Gaps = 55/475 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AG EA+   AK G    L   +   +     +     L   + +R     +A
Sbjct: 5   VNVIGAGLAGVEASYQLAKRGYKVRLYEMRPKKMTPAHHSENFAELVCSNSLRADGMTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +   + + PA  G     DRE +  ++   I +   ++VI  EV
Sbjct: 65  VGVLKCEMEMLDSIVIKYARIHQVPA--GGALAVDRENFSKSITEFIKTHPLIEVINEEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     II             ++  LT+ +    +               +P  +  +
Sbjct: 123 KKFPEGYTII-------------ASGPLTSDSLSNAIKDKLGEDYFYFYDAAAPIVTKDS 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  +   R   G     D + I    TE+QF D       F    I    ++     
Sbjct: 170 IDFEIAYYKSRYDKG-----DNEYINCPMTEEQFND-------FYDALINAEVVKPKEF- 216

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E         +  A        +GP     +       G+R    + L  + +   +
Sbjct: 217 --EEKFFEGCMPFEEMARRGKQTLLFGPMKPVGLNTPE---GKRPFAVVQLRQDNVQASL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q + I  IPGLE  + +R G      +I +PK L  T + K  + +
Sbjct: 272 YNIVGFQTHLTWPEQKRIIHMIPGLENASFVRYGVMHRNSFICSPKYLLNTYQLKLANNI 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQI G  GY E+A  G+VAGIN AR     + + F + ++ +G + + +T+    + 
Sbjct: 332 FMAGQITGVEGYVESAQSGIVAGINMARLLEGKELLVFPK-ETVMGALANYITNASKDD- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                         +P  A+  + P         + R++ +A  ++  N ++  +
Sbjct: 390 -------------FQPMKANFGILP-DFPTRIKKKERKEAYA--MRAINTMKEFI 428


>gi|146296273|ref|YP_001180044.1| gid protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205830328|sp|A4XIW8|TRMFO_CALS8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145409849|gb|ABP66853.1| gid protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 435

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 166/488 (34%), Gaps = 70/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGG----LG 54
           + VIG G AG EAA    K G    L   K                 C+ ++        
Sbjct: 3   ITVIGAGLAGVEAANAITKFGIKVRLYEMKPKKFSPAHKQEGFAELVCSNSLKSKLLTNA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+     ++   A                   G     DR L+   + ++I   
Sbjct: 63  SGLLKEEMKLFGSIVMEAAYNT------------QVEAGQALAVDRYLFSEYITKKIKQN 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI  EV     ++ ++             ST  LTT + L  +  +   K      
Sbjct: 111 PLIEVIHEEVTEVPRDEVVVV------------STGPLTTESLLEDISKLCNSKNLYFFD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +      F   R   GT        I    T++++  ER        + I 
Sbjct: 159 AAAPIVLKDSIDFSKAFFASRYNKGTD-----DYINCPMTKEEY--ERFYYELVNAEVIE 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E  +                  A    D   +GP     I D   + G+     + 
Sbjct: 212 VKDFERDLLFEGCMPIE-------EMAKRGIDTIRFGPLKPVGIIDP--KTGKMPYAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +  R IPGLE    +R G   +  YIN P+ L  
Sbjct: 263 LRKDTQDGRLYNMVGFQTRLKWGEQKRVFRLIPGLENAEFVRYGVMHKNSYINSPQVLTK 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  KK   +F AGQI G  GY E+AA G+VAGIN+AR       I    +   IG +I+
Sbjct: 323 FLSLKKYPNIFFAGQITGVEGYLESAATGIVAGINAARYVLGRAQITLPPSTC-IGALIE 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T+                    +P NA+  +  I  ++  I ++ +++     +  + 
Sbjct: 382 YITTPKKD---------------FQPMNANYGIISIDEEIARIKDKEKRKLLIAEKSLSV 426

Query: 474 LRSLLKSL 481
            R +   +
Sbjct: 427 CREIANQI 434


>gi|150020140|ref|YP_001305494.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosipho melanesiensis
           BI429]
 gi|205830345|sp|A6LJK8|TRMFO_THEM4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|149792661|gb|ABR30109.1| gid protein [Thermosipho melanesiensis BI429]
          Length = 429

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 179/490 (36%), Gaps = 81/490 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH---------- 57
           V +IG G AG E A      G    +   K     ++  NP  G L   +          
Sbjct: 3   VNIIGAGLAGVEVAWKLLNTGVKVRIFEQKPKKFSTVHKNPNFGELVCSNSLKSESLNNA 62

Query: 58  ---LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
              L  E++ LD L+ + A    +              G     DR+ +   +   ILS 
Sbjct: 63  EGILKAEMNILDSLVLKCAYRCRV------------PAGKALAVDRDKFSQCITEHILSF 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +N++VI+ E+   + +++ I  +                TG    G        +  G +
Sbjct: 111 DNVEVIREEIKSIDLKEDEIWVV---------------ATGPTTDGEFANWLSNLTGGFL 155

Query: 175 GD----SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
                 +P  S  +      F   R   GT        I    T++++  ER        
Sbjct: 156 NFFDAVAPIISGDSIDFNKCFFADRYGKGTS-----DYINCPMTKEEY--ERFYKELINA 208

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +KI     +  +     +    I ++ + S         +GP     + D   R G+   
Sbjct: 209 EKIEMEDFDRKLLFERCQPIEEIAKSGEKS-------LLFGPLRPVGLIDP--RTGKMPY 259

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             I L  E  N ++    G  T L    Q + IR IPGLE   I+R G      YI+ PK
Sbjct: 260 AIIQLRKEDENGNMYNLVGFQTRLKWPQQKRIIRLIPGLENAEILRYGVMHRNTYIDSPK 319

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L   L  KK   LF AGQI G  GY E+AA G+  GIN  R   K + +    T + +G
Sbjct: 320 VLDEFLRHKKFQNLFFAGQITGVEGYVESAATGIFVGINILRFLEKKELVALP-TKTMLG 378

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            +++ +T+                   L+P  A+  L    +K+G   E+R+K     ++
Sbjct: 379 ALLNYITT----------------SKQLKPMYANFGLVD--VKMG-KKEKREKLHKICLE 419

Query: 470 EYNFLRSLLK 479
           E      +LK
Sbjct: 420 EMKKFLYMLK 429


>gi|227535114|ref|ZP_03965163.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187255|gb|EEI67322.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 439

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 171/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTSNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + +++ S  ++ V+  E+
Sbjct: 64  VGLLKEEMRQLHSIIIQSADATAVPA--GGALAVDREPFSELVTQKLTSNSHIHVVNEEL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           + F     ++             +T  LT     + ++ +      +     +P      
Sbjct: 122 SAFPDGITVV-------------ATGPLTAPGLAQAIVDLNGEAGLSFFDAAAPILDANT 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+              DE L  +  +         +     
Sbjct: 169 INEDIVYKKSRYDRGEAAYLNCPMTK---------DEFLTFYQALVSAEVAEGHDF---- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   R G+     + L  +     +
Sbjct: 216 -EKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--RTGKEPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNMVGFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     + F  T +  G M D +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGTNAARMALGETPLIFPETTAM-GSMADYITHTSAHH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P NA+  + P + +K+    ER Q+   + +++    ++ +  + 
Sbjct: 391 -------------FQPMNANFGIMPALTVKVRNKKERNQQLADRALKDLATFQAGMNRVE 437


>gi|154500971|ref|ZP_02039009.1| hypothetical protein BACCAP_04657 [Bacteroides capillosus ATCC
           29799]
 gi|150269995|gb|EDM97514.1| hypothetical protein BACCAP_04657 [Bacteroides capillosus ATCC
           29799]
          Length = 434

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 169/483 (34%), Gaps = 71/483 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           VIVIG G AG EAA   A+ G    L   K   +      P  G L   + +R       
Sbjct: 4   VIVIGAGLAGSEAAWQLAQRGIPVELREMKPEKMTPAHHTPWFGELVCSNSLRSDQLENA 63

Query: 61  ------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
                 E+  +  L+   AD   +              G     DR  +  A+  +I S 
Sbjct: 64  VGLLKEELRRMGSLILSCADEHRV------------EAGGALAVDRHGFAQAITEKIRSH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGR 173
             + V++GEV     E  +I             ++  LT+ T    +     +       
Sbjct: 112 PLITVVEGEVEHLPAEGQVIV------------ASGPLTSDTLAEDIKGFFPESHYLNFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M+  F   R   GTP       I    T +++        +F T+  
Sbjct: 160 DAAAPLVTFESVDMESAFFASRYDKGTP-----DYINCPLTAEEY-------EAFWTELC 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             ++ E        +        ++  A    D   YGP     ++D   + G+     +
Sbjct: 208 AAQEAEVHGF--EDKNVFEGCMPVEVMARRGHDTLCYGPLKPRGLKDP--KTGKEPFAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +    IP L+    +R G      Y++ P+ L 
Sbjct: 264 QLRKDNADGTIYNLVGFQTHLKWPEQKRVFSMIPALKNAEFLRYGVMHRNTYLDSPRLLD 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
                KK   +  AGQI G  GY E+ A G +A +  +R+   L  + F + ++  G + 
Sbjct: 324 RYYRVKKDPRICFAGQITGVEGYVESTASGFLAALELSRRLRGLPPVDFPQ-ETATGALA 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEY 471
             ++++ V +               +P N +  +  P+G K+     +  +   + +++ 
Sbjct: 383 LYISNETVTD--------------FQPMNVNFGIIPPLGYKVKGKRNKNAELSKRALEKL 428

Query: 472 NFL 474
             L
Sbjct: 429 AEL 431


>gi|325912870|ref|ZP_08175248.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325477863|gb|EGC80997.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 437

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLKKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|116494888|ref|YP_806622.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
 gi|122263694|sp|Q039E2|TRMFO_LACC3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116105038|gb|ABJ70180.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactobacillus casei ATCC 334]
          Length = 439

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 170/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTSNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + +++ S  ++ V+  E+
Sbjct: 64  VGLLKEEMRQLHSIIIQSADATAVPA--GGALAVDREPFSELVTQKLTSNSHIHVVNEEL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           + F     ++             +T  LT     + ++ +      +     +P      
Sbjct: 122 SAFPDGITVV-------------ATGPLTAPGLAQAIVDLNGEAGLSFFDAAAPILDANT 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+                +    +F    ++    E     
Sbjct: 169 INEDIVYKKSRYDRGEAAYLNCPM------------TKDEFLAFYQALVSAEVAEGHDF- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   R G+     + L  +     +
Sbjct: 216 -EKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--RTGKEPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNMVGFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AGIN+ R +     + F  T +  G M   +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGINATRMALGETPVIFPETTAM-GSMAHYITHTSAHH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P NA+  + P + +K+    ER Q+   + +++    ++ +  + 
Sbjct: 391 -------------FQPMNANFGIMPALTVKIRNKKERNQQLADRALKDLATFQAGMNRVE 437


>gi|258626071|ref|ZP_05720922.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581597|gb|EEW06495.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 253

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/204 (50%), Positives = 126/204 (61%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRSVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      GR GD PS 
Sbjct: 122 QQAVDDVIVENDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENFAGGRAGDPPSI 181

Query: 181 SLFNSFMKFDFDTGRLKTGTPARL 204
           +L +   +  F   RLKTGTP  L
Sbjct: 182 ALAHRLRELPFRVDRLKTGTPHVL 205


>gi|158424513|ref|YP_001525805.1| tRNA (uracil-5-)-methyltransferase Gid [Azorhizobium caulinodans
           ORS 571]
 gi|205830307|sp|A8ID68|TRMFO_AZOC5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|158331402|dbj|BAF88887.1| gid protein [Azorhizobium caulinodans ORS 571]
          Length = 471

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 158/448 (35%), Gaps = 38/448 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG EAA   A+ G    L   +            +  L   +  R  DA   
Sbjct: 9   VHVVGGGLAGSEAAFQLAERGVPVVLHEMRPVRGTEAHHTDGLAELVCSNSFRSDDAQTN 68

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +  A  +  R  +  + PA  G     DR+ +  A+   +     +++ + E
Sbjct: 69  AVGVLHAEMRRAGSLILRCADANQVPA--GGALAVDRDGFSQAVTAALAEHPLVEIRREE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     E+    ++++            LT+    + V+ +      A     +P   L 
Sbjct: 127 VTAIPPEEWD--NVIIATG--------PLTSPALAQAVLELTGESALAFFDAIAPIVHLD 176

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  +   +   R     P       I     ++Q+  E  +     ++K+  R  E    
Sbjct: 177 SIDLSKAWFQSRYDKVGPGGTGADYINCPLDKEQY--EAFVDALLASEKVPLRDFE---- 230

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLN 301
               +T        I+  A    +   +GP     + +      + +    I L  +   
Sbjct: 231 ---AKTPYFDGCLPIEVMAERGRETLRFGPLKPVGLTNPHN--PDVKPHAVIQLRQDNKL 285

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T +    Q +  RTIPGLE     R G      Y+N P+ L  TL  K  
Sbjct: 286 GTLYNLVGFQTKMRHGEQVRVFRTIPGLENAEFARLGGLHRNTYLNSPRLLDGTLRLKAA 345

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L  AGQI G  GY E+AA GL+AG  +A +    + +      +  G ++  +T   +
Sbjct: 346 PRLRFAGQITGCEGYVESAAVGLMAGRFAAAERRG-EALVPPPATTAHGALLAHITGGHI 404

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTP 448
                   +      S +P N +  L P
Sbjct: 405 E-------TVDAGPRSFQPMNVNFGLFP 425


>gi|325912026|ref|ZP_08174428.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 143-D]
 gi|325476211|gb|EGC79375.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners UPII 143-D]
          Length = 437

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLAAKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCENLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|218283547|ref|ZP_03489537.1| hypothetical protein EUBIFOR_02127 [Eubacterium biforme DSM 3989]
 gi|218215815|gb|EEC89353.1| hypothetical protein EUBIFOR_02127 [Eubacterium biforme DSM 3989]
          Length = 432

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 162/487 (33%), Gaps = 78/487 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH---------KTSTIGSMSCNPAIG----GLG 54
           V VIG G AGCEA     K      L+            T     + C+ ++        
Sbjct: 4   VTVIGAGLAGCEATWQLIKRNIPVRLVEMRPKKESPAFHTDRFAELVCSNSLRSNAMNNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ + AD   +              G     DRE +   +   I + 
Sbjct: 64  VGILKEELRQMDSLIMKSADMHAV------------PAGSALAVDRETFSQYITDTIKNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V+  E+        II             +T  LT+ T  + +             
Sbjct: 112 PLVEVVNEEMTSLPEGPCII-------------ATGPLTSDTLAKAIHDFTAEDTFHFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +      +   R   G  + ++      D+ E            F    I 
Sbjct: 159 AAAPIIEKDSIDFSKAYYKSRYDKGEASYINCPM-NADEFEV-----------FYDALIH 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH--- 291
              +         ET+      I+  A        +GP     +E       +++ H   
Sbjct: 207 AECVNLHDF--EKETYFEGCMPIEEMARRGKKTMLFGPLKPVGLEK------DKDSHPVA 258

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  + +   +    G  T L    Q +    IPGLE + I R G      Y++ P  
Sbjct: 259 VVQLRQDNVAASMYNIVGFQTHLTWPEQRRVFALIPGLENLKITRYGVMHRNSYLSSPVV 318

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  T ++KK   LF AGQ+ G  GY E+ A GL+AGIN A      + ICF  T   +G 
Sbjct: 319 LKETYQSKKRDDLFFAGQLTGVEGYVESCASGLIAGINMALYMQGKEPICFGNT-CVMGS 377

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
             + +T                     +P NA+  +  +  K     ER++K  ++ +  
Sbjct: 378 QANYITHCDAKH--------------FQPMNANFGIMHLNEKCK-KHERKEKFASQALAR 422

Query: 471 YNFLRSL 477
              ++  
Sbjct: 423 IAQIKDE 429


>gi|259500642|ref|ZP_05743544.1| glucose-inhibited division protein [Lactobacillus iners DSM 13335]
 gi|302191331|ref|ZP_07267585.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners AB-1]
 gi|259168026|gb|EEW52521.1| glucose-inhibited division protein [Lactobacillus iners DSM 13335]
          Length = 437

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLAAKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|220931599|ref|YP_002508507.1| gid protein [Halothermothrix orenii H 168]
 gi|219992909|gb|ACL69512.1| gid protein [Halothermothrix orenii H 168]
          Length = 437

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 169/479 (35%), Gaps = 70/479 (14%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL----GK 55
           IVIG G AGCEA   A   G    L   +               + C+ ++G        
Sbjct: 5   IVIGAGLAGCEATWQAINRGVEVDLYEMRPEQKTPAHNTGFFAELVCSNSLGANHLHNAG 64

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E+  L+ L+ + AD            + PA R      DR  +   + +++    
Sbjct: 65  GILKEEMRHLNSLIIKTADK----------HRVPAGRALA--VDRNEFAREITKKLKEHP 112

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            +     EV     ++ +I             +T  LT+    + +  +   +       
Sbjct: 113 GVHYHNEEVTDIPEDRVVII------------ATGPLTSDKLTKEIKKLTGEEYLYFFDA 160

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P  +  +      F   R + G    L+       + E     E         ++   
Sbjct: 161 AAPIITADSIDYNKVFRASRYEDGKGDYLNCPM---SREEY----EEFWNALVSAERHQP 213

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
              E  +         ++ E              +GP     + D   +  E+    + L
Sbjct: 214 HNFEKDMYFEGCLPIEVLAE-------RGKKTLLFGPLKPVGLVDPNTQ--EKPYAVVQL 264

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L    Q + I  IPGLE   I+R G      Y+N PK L   
Sbjct: 265 RQDNAEGTLYNLVGFQTRLKWGEQKRIINMIPGLENAEIVRYGVMHRNTYLNSPKLLNSC 324

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
            + +    +F AGQI G  GY E+A+ GL+AG+N+AR     + + F RT ++ G +   
Sbjct: 325 YQLRHKENIFFAGQITGVEGYVESASSGLIAGLNAARLLQGKELLRFPRTTAH-GALSSY 383

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYN 472
           +++                   L+P N +  L  P+ +K+    ER++K+  + +++  
Sbjct: 384 ISNPAKD--------------KLQPMNINFGLFPPLDIKIRNKRERKEKKGTRALEDLK 428


>gi|172035700|ref|YP_001802201.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. ATCC 51142]
 gi|205830330|sp|B1WR77|TRMFO_CYAA5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|171697154|gb|ACB50135.1| gid protein [Cyanothece sp. ATCC 51142]
          Length = 460

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 103/503 (20%), Positives = 171/503 (33%), Gaps = 75/503 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M   +  V VIGGG AG EAA   A+ G    L           H +  +  + C+ + G
Sbjct: 1   MTESTAKVQVIGGGLAGTEAAWQVAQAGIPVILHEMRPIRTSPAHHSQELAELVCSNSFG 60

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L+ ++ + AD   +              G     DR ++   +
Sbjct: 61  AMSSNRAAGLLHEELRRLNSIIIQTADKHAV------------PAGGALAVDRGVFSHQL 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + + +   +++ + EV    ++      +++            LT+      +     +
Sbjct: 109 TQTLQNHPLIELRRSEVQEIPSDGI----VILATG--------PLTSPVLAEKLQQFTGM 156

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +     SP     +      F   R   G  A L+                      
Sbjct: 157 AYMSFFDAASPIIVGDSINRDIAFLASRYDKGEAAYLNCPL------------NPEQYLQ 204

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F  +  T  Q E                 I+  A    D   YGP     + D   R G+
Sbjct: 205 FRDELCTAEQAELKEFERETAKFFEGCLPIEELAQRGEDTMRYGPLKPVGLFDA--RLGD 262

Query: 288 ---------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
                    R    + L  E     +    G  T L    Q +  R IPGLE    +R G
Sbjct: 263 FRDPENKEKRPYAVVQLRQEDKQGKLWNMVGFQTNLKWGEQKRVFRLIPGLENAEFVRMG 322

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +IN P+ L PTL+ K    L  AGQ+ GT GY  A+A G +AG N+AR +  L+
Sbjct: 323 VMHRNTFINSPQLLDPTLQFKSRPTLLAAGQLIGTEGYTAASAGGWLAGTNAARIALGLE 382

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
            I    T + +G + + ++S     P         + I          L  + +++    
Sbjct: 383 PISLPST-TMMGALFEFISSAS---PKHFQPMPPNFGI----------LPDLPVRIRNKR 428

Query: 458 ERRQKRFAKYIQEYNFLRSLLKS 480
           ER  K   + + + N  ++ L +
Sbjct: 429 ERYGKYRDRALADLNDCQTQLNN 451


>gi|329921312|ref|ZP_08277750.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN 1401G]
 gi|328934604|gb|EGG31108.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN 1401G]
          Length = 437

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCENLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|191638399|ref|YP_001987565.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus casei BL23]
 gi|190712701|emb|CAQ66707.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Lactobacillus casei BL23]
 gi|327382428|gb|AEA53904.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus casei LC2W]
 gi|327385627|gb|AEA57101.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus casei BD-II]
          Length = 439

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 169/480 (35%), Gaps = 51/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTSNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +  +    PA  G     DRE +   + +++    ++ V+  E+
Sbjct: 64  VGLLKEEMRQLHSIIIQSADATAVPA--GGALAVDREPFSELVTQKLTGNSHIHVVNEEL 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           + F     ++             +T  LT     + ++ +      +     +P      
Sbjct: 122 SAFPDGITVV-------------ATGPLTAPGLAQAIVDLNGEAGLSFFDAAAPILDANT 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G  A L+              DE L  +  +         +     
Sbjct: 169 INEDIVYKKSRYDRGEAAYLNCPMTK---------DEFLTFYQALVSAEVAEGHDF---- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
               T       I+  A        +GP     +ED   R G+     + L  +     +
Sbjct: 216 -EKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--RTGKEPYAVVQLRQDNAAASL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE V I+R G      ++ +P  L PT  +K+   L
Sbjct: 273 YNMVGFQTHLKWGEQKRVFRLIPGLENVQIVRYGVMHRNTFMKSPVVLEPTYASKRRPDL 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG N+AR +     + F  T +  G M   +T       
Sbjct: 333 FFAGQMTGVEGYVESAASGLIAGTNAARMALGETPLIFPETTAM-GSMAHYITHTSAHH- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                         +P NA+  + P + +K+    ER Q+   + +++    ++ +  + 
Sbjct: 391 -------------FQPMNANFGIMPALTVKVRNKKERNQQLADRALKDLATFQAGMNRVE 437


>gi|312873931|ref|ZP_07733967.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2052A-d]
 gi|311090480|gb|EFQ48888.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2052A-d]
          Length = 437

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCENLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|188997018|ref|YP_001931269.1| gid protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254789184|sp|B2V9U2|TRMFO_SULSY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|188932085|gb|ACD66715.1| gid protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 438

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 164/486 (33%), Gaps = 55/486 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG EAA   A+ G    L   +          P    +   +         G
Sbjct: 3   VAVIGAGLAGSEAAYKIAQAGYKVDLYEMRPEKQTPAHKTPYFAEIVCSNSFGSESLTSG 62

Query: 68  LMGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                 +   +   +L+V K      G     DRE +   +   + +  N++VI+ EV  
Sbjct: 63  AGLLKKEMEVLGSIILDVAKEFKVPAGQAFAVDREKFSKKLTEILENHPNINVIRQEVKT 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                 I+             +T  LT+  F + +  I   +        +P        
Sbjct: 123 LPDADIIVI------------ATGPLTSEEFSKEIQKITGSEYLYFYDAIAPVVDASTVD 170

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R   GT    +          +Q  +       F  + +   Q+        
Sbjct: 171 FSKGFWADRYGKGTGDYFNC------VLSEQEYEI------FYQELLKGEQVPLKDF--E 216

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
              +      I+  A    +   YGP     + D   + G+R    + L  E +   ++ 
Sbjct: 217 RAVYFEGCLPIEEIARRGKETLLYGPMKPVGLIDP--KTGKRPYAVVQLRKENIEGTLLS 274

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFL 365
             G  T L    Q +    IP L+    ++ G      +I   K L PTL+ +K   +  
Sbjct: 275 LVGFQTKLKYPEQKRIFSLIPALKDAEFVKLGSIHRNTFIQSQKLLKPTLQLRKKPNILF 334

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY  +AA G++AGIN AR     + +   +T + IG +I+ +T+        
Sbjct: 335 AGQITGVEGYMASAATGIIAGINVARMLEGKEPVVPPKT-TMIGGLINYITT-------- 385

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
                           A N L P+G     + E  +K   K  ++       LK +   +
Sbjct: 386 ----------------AKNELQPMGPNYALLPELEEKIKGKEERKLKKAEIALKDIKEWT 429

Query: 486 KNLSST 491
           K + S 
Sbjct: 430 KEIESA 435


>gi|312871380|ref|ZP_07731475.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 3008A-a]
 gi|311093033|gb|EFQ51382.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 3008A-a]
          Length = 437

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKITQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+     E   I             +T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIPKEGINII------------ATGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|225848138|ref|YP_002728301.1| tRNA (uracil-5-)-methyltransferase Gid [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644457|gb|ACN99507.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 434

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 100/488 (20%), Positives = 174/488 (35%), Gaps = 71/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A+ G    L   +               + C+ + G      G
Sbjct: 3   VAVIGAGLAGSEAAYKIAQAGFKVDLYEMRPKKLTPAHTTGYFAEIVCSNSFGSESLTSG 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E++ L  L+  VA             K PA  G     DRE +   + + + + 
Sbjct: 63  AGLLKKEMEELGSLLLDVAKEY----------KVPA--GQAFAVDREKFSKKVTQVLENH 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+++++ EV        ++             +T  LT+  F + +  +   +      
Sbjct: 111 PNINIVREEVKQLPDADIVVI------------ATGPLTSEDFSKEIQKLTSSEYLYFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P            F   R   G      G       +++++         F  + I 
Sbjct: 159 AIAPVVDASTVDYSKGFWADRYGKG-----SGDYFNCVLSQEEY-------EVFYQELIK 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q+           +      I+  A    +   YGP     + D   + G+R    + 
Sbjct: 207 GEQVPLKDF--EKAVYFEGCLPIEEMARRGKETLLYGPMKPVGLIDP--KTGKRPFAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFP 353
           L  E +   ++   G  T L    Q +  R IP L+    ++ G      +I   K L P
Sbjct: 263 LRKENIEGTLLSLVGFQTKLKYPEQQRIFRLIPALKDAEFVKLGSIHRNTFIQSQKLLLP 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ KK   +  AGQI G  GY  +AA G++AGIN  R     + +   + ++ IG +I+
Sbjct: 323 TLQLKKNPNILFAGQITGVEGYMASAATGIIAGINVVRILQGKEPLTVPK-ETMIGGLIN 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T+                   L+P   +  L P I  K+    ER+ K+    +++  
Sbjct: 382 YITTAKN---------------ELQPMGPNFALLPDINTKIKNKEERKLKKAEIALEKIK 426

Query: 473 FLRSLLKS 480
             +  +  
Sbjct: 427 EFKEKINR 434


>gi|163793150|ref|ZP_02187126.1| glucose-inhibited division protein A [alpha proteobacterium BAL199]
 gi|159181796|gb|EDP66308.1| glucose-inhibited division protein A [alpha proteobacterium BAL199]
          Length = 463

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 105/475 (22%), Positives = 166/475 (34%), Gaps = 51/475 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 8   VHVIGGGLAGSEAAWTLANSGVPVILHEMRPVRGTDAHKTGGLAELVCSNSFRSDDHEAN 67

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+    DA           K PA  G     DR+ +   +Q  + +
Sbjct: 68  AVGVLHEELRRCGSLILEAGDA----------HKVPA--GSALAVDRDGFSAMVQSRLEA 115

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + +GE+ G         S+++            LT+      +         A  
Sbjct: 116 HPLVAIERGEIDGLPPADWD--SVIIATG--------PLTSPALAEAIQSRTGSDSLAFF 165

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +      +   R     P       I     + Q+  E  +     ++K+
Sbjct: 166 DAIAPIVHTDSVNFDVAWYQSRYDKPGPGGTGKDYINCPLDQDQY--ETFVQALLDSEKM 223

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              + E     T    +      I+  A    D   YGP     + D   R G R    +
Sbjct: 224 NFHEWEA----TTP--YFEGCMPIEVMASRGLDTLRYGPMKPIGLTDP--RTGRRAHAVV 275

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T +    Q +  RTIPGLE     R G      +IN P+ L 
Sbjct: 276 QLRQDNALATLFNIVGFQTKMRHGEQVRVFRTIPGLENAEFARLGGLHRNTFINSPRLLD 335

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            +L  K    L  AGQI G  GY E++A GL+AG  +A +          RT + +G ++
Sbjct: 336 GSLRLKVEPRLRFAGQITGVEGYVESSAIGLLAGRFAAAERLGRQPEQPPRTTA-LGGLL 394

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
             +T +   E ++       + +   PD A+  +T  G +    G  R+K  A+ 
Sbjct: 395 AHITGEANPETFQ--PMNVNFGLLPPPDEAET-ITVNGKRRKLKGLDRKKVQARR 446


>gi|312872381|ref|ZP_07732451.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092204|gb|EFQ50578.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2062A-h1]
          Length = 437

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 167/485 (34%), Gaps = 70/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+               +D   I   T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIP-----------KDGINIIA-TGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M +
Sbjct: 325 TYETKLCENLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMAN 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +TS                  + +P NA   L P +  K+    ER   +    + E N
Sbjct: 384 YITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELN 429

Query: 473 FLRSL 477
             ++ 
Sbjct: 430 EFKNK 434


>gi|281491736|ref|YP_003353716.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375450|gb|ADA64960.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis KF147]
          Length = 447

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 164/474 (34%), Gaps = 65/474 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG-- 52
           +   + VIG G AG EAA   AK G    L           HKT     + C+ ++ G  
Sbjct: 2   KKTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKQTPQHKTDKFAELVCSNSLRGAA 61

Query: 53  --LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L  E+  LD ++ + A+                  G     DRE +   + RE
Sbjct: 62  ITNAVGLLKEEMRRLDSVIIKAAEVT------------QVPAGGALAVDREGFSDFVTRE 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           + +   ++VI+ E+     ++  I  +  +  D    +        G +           
Sbjct: 110 VSNHPLIEVIREEITDLPEDEITIIATGPLTSDELAEKIHEFNGADGFYFYD-------- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D+ S +    + K  +D G          +   I    T+++F  +       
Sbjct: 162 -AAAPIIDANSINFDKVYKKSRYDKG----------EADYINCPMTKEEF--QAFQEALI 208

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             ++      E                     A        +GP     +E      G R
Sbjct: 209 SAEEAPLNSFEDLKVFEGCMPIE-------EMAKRGYKTMLFGPMKPVGLEYPEDYKGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +  +  +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGDFKTPYAVVQLRQDNASASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T +++K   LF AGQ+ G  GY E+AA GLVAGIN+ +  N  + + F
Sbjct: 322 NSYMDSPNLLKQTFQSRKQENLFFAGQMTGVEGYVESAASGLVAGINAVKLFNDEEVVIF 381

Query: 402 SRTDSYIGVMIDDLTSKG--VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            +T + IG +   +T       +P  +     E     R  +   R T +  + 
Sbjct: 382 PKTTA-IGSLPYYITHTDSKHFQPMNVTFGIVEELEGPRIRDKKERYTKVAERA 434


>gi|332653523|ref|ZP_08419268.1| tRNA:M(5)U-54 methyltransferase [Ruminococcaceae bacterium D16]
 gi|332518669|gb|EGJ48272.1| tRNA:M(5)U-54 methyltransferase [Ruminococcaceae bacterium D16]
          Length = 434

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 160/471 (33%), Gaps = 51/471 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           VIVIG G AG EAA   A  G    L   K + +     +   G L   + +R     +A
Sbjct: 4   VIVIGAGLAGSEAAWQLANRGIPVRLHEMKPNKMTPAHHSTDFGELVCSNSLRSDQLENA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  +  A  G     DR  +  A+  +I +  N+ V++ EV
Sbjct: 64  VGLLKEELRRCNSLIMACADEHRVEA--GGALAVDRHAFSAAITEKIKTHPNITVVEEEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK-IPAGRMGDSPSNSLF 183
                E ++I             ++  LT       +                +P  +  
Sbjct: 122 LDIPEEGHVIV------------ASGPLTAEPLAEAIGRRYPQNGYLHFFDAAAPLVTFE 169

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M+  +   R   GTP       I    TE+++  +          +      E    
Sbjct: 170 SVDMESAWFASRYDRGTP-----DYINCPMTEEEY--DAFWKELTTAQEAEVHGFEDAGV 222

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++       A    D   YGP     + D   + G+     + L  +     
Sbjct: 223 FEGCMPVEVM-------ARRGRDTLCYGPLKPVGLRDP--KTGKEPFAVVQLRKDNAQGS 273

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +    IP L+    +R G      +++ P+ L      +    
Sbjct: 274 IYNIVGFQTHLKWPEQKRVFSMIPALKNAEFVRYGVMHRNTFLDSPRLLDRYYRVRTEPR 333

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +  AGQI G  GY E+ A G +A +  AR+    + I F R ++ +G +   ++ + V+ 
Sbjct: 334 VRFAGQITGVEGYVESTASGCLAAMELARELEGKEPINFPR-ETAMGALALYISDESVVH 392

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
                          +P N +  L P +G ++     +  +   + ++  +
Sbjct: 393 --------------FQPMNINFGLIPALGYRVKGKRNKNAELSKRALEALD 429


>gi|15673213|ref|NP_267387.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           lactis Il1403]
 gi|26006775|sp|Q9CG79|TRMFO_LACLA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|12724202|gb|AAK05329.1|AE006355_4 glucose inhibited division protein GidC [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326406771|gb|ADZ63842.1| uracil-5-tRNA-methyltransferase Gid [Lactococcus lactis subsp.
           lactis CV56]
          Length = 447

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 164/474 (34%), Gaps = 65/474 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG-- 52
           +   + VIG G AG EAA   AK G    L           HKT     + C+ ++ G  
Sbjct: 2   KKTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKQTPQHKTDKFAELVCSNSLRGAA 61

Query: 53  --LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L  E+  LD ++ + A+                  G     DRE +   + RE
Sbjct: 62  ITNAVGLLKEEMRRLDSVIIKAAEVT------------QVPAGGALAVDREGFSDFVTRE 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           + +   ++VI+ E+     ++  I  +  +  D    +        G +           
Sbjct: 110 VSNHPLVEVIREEITDLPEDEITIIATGPLTSDKLAEKIHEFNGADGFYFYD-------- 161

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A  + D+ S +    + K  +D G          +   I    T+++F  +       
Sbjct: 162 -AAAPIIDANSINFDKVYKKSRYDKG----------EADYINCPMTKEEF--QAFQEALI 208

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             ++      E                     A        +GP     +E      G R
Sbjct: 209 SAEEAPLNSFEDLKVFEGCMPIE-------EMAKRGYKTMLFGPMKPVGLEYPEDYKGPR 261

Query: 289 ------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                     + L  +  +  +    G  T L    Q +  + IPGLE    +R G    
Sbjct: 262 DGDFKTPYAVVQLRQDNASASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHR 321

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             Y++ P  L  T +++K   LF AGQ+ G  GY E+AA GLVAGIN+ +  N  + + F
Sbjct: 322 NSYMDSPNLLKQTFQSRKQENLFFAGQMTGVEGYVESAASGLVAGINAVKLFNDEEVVIF 381

Query: 402 SRTDSYIGVMIDDLTSKG--VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
            +T + IG +   +T       +P  +     E     R  +   R T +  + 
Sbjct: 382 PKTTA-IGSLPYYITHTDSKHFQPMNVTFGIVEELEGPRIRDKKERYTKVAERA 434


>gi|240850278|ref|YP_002971671.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
 gi|240267401|gb|ACS50989.1| glucose inhibited division protein A [Bartonella grahamii as4aup]
          Length = 470

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/494 (19%), Positives = 170/494 (34%), Gaps = 61/494 (12%)

Query: 2   INRSYDV--IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           + +++D+   +IGGG AGCEA+   A+ G    L   +            +  L   +  
Sbjct: 1   MLKTFDIPIHIIGGGLAGCEASWQIAQSGIPVVLHEMRPEKKSDAHKTDNLAELVCSNSF 60

Query: 60  REID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  D    A+  L   +  A  +  +  +  K PA  G     DR+ +   +   I +  
Sbjct: 61  RCDDSLTNAVGLLHAEMRLAKSLIMKAADANKVPA--GSALAVDRDGFSKTVTTAIENHP 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-------TFLRGVIHIGKLK 168
            + + + EV         +        S      +   TG         +  +IH   + 
Sbjct: 119 LITIKREEVQEIPKAWKHVVIATGPLTSPALAQELQAITGIKALSFFDAIAPIIHTNSID 178

Query: 169 IPAG----RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
           I       R            ++    +  + KT   A  + +   +   EK    +  +
Sbjct: 179 INICWYQSRYDKIGPEGTGKDYLNCPLNKEQYKTFVEALKNAEKTEFRDFEKTPYFDGCL 238

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           P   M ++                                 +   +GP     + +    
Sbjct: 239 PIEIMAER-------------------------------GLETLRHGPMKPMGLTNAHNP 267

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
              +    + L  +     +    G  T L    Q +  R IPGLEK    R G      
Sbjct: 268 TV-KPYAVVQLRQDNKLGTLYNMVGFQTKLKYGEQIRIFRMIPGLEKAEFARLGGLHRNT 326

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           Y+N P  L  TL  K+   L  AGQI G  GY E+AA GL+AG  +A + + +      +
Sbjct: 327 YLNSPIILDQTLRLKQKKQLRFAGQITGCEGYVESAAIGLLAGHFAAAEYHHISPCLPPQ 386

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
           T ++ G +++ +T   +++       +AE + S +P N +  L P    +   G+ R   
Sbjct: 387 TTAF-GALLNHITGGHIID------EKAETQ-SFQPMNINFGLFPPIASIRHSGK-RLAS 437

Query: 464 FAKYIQEYNFLRSL 477
             K + +   + + 
Sbjct: 438 KEKKLVKKQAITAR 451


>gi|78213211|ref|YP_381990.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9605]
 gi|123577957|sp|Q3AIZ7|TRMFO_SYNSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78197670|gb|ABB35435.1| gid protein [Synechococcus sp. CC9605]
          Length = 456

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/499 (21%), Positives = 167/499 (33%), Gaps = 73/499 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++S  V V+G G AG EAA   A+ G +  L+          H +S    + C+ + G 
Sbjct: 1   MSQSPHVTVLGAGLAGTEAAWQVARAGVAVTLVEMRPIRRSPAHHSSDFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  L+   AD              PA  G     DR  Y  A+ 
Sbjct: 61  LSSDRAAGLLQEELRRLGSLVIGTAD----------THAVPA--GGALAVDRGRYSAALT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     + + + E      E  I    V+            LT+      +       
Sbjct: 109 EALDQHPLVTIERREQQNLPPENAIT---VLATG--------PLTSEPLAEDLRQFTGRA 157

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP     +  +   F   R   G     D   I     ++Q+        +F
Sbjct: 158 DCHFFDAASPIVHGDSIDLSVAFRASRYDKG-----DADYINCPMDKEQY-------LAF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK------- 281
               +   Q E      N  T       I+  A    D   YGP     + D        
Sbjct: 206 RQALLEAEQAELKDFDKNDATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVND 265

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             VR  +R    + L  E  +  +    G  T L    Q + ++ IPGL +   +R G  
Sbjct: 266 RDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLGQAEFVRFGVM 325

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++  P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR +  L+ I
Sbjct: 326 HRNTFLESPQLLQPTLQFRQRPNLLAAGQITGTEGYAAAVAGGWLAGTNAARLALGLEPI 385

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGE 458
               T    G +   ++                     +P   +  L P +  ++     
Sbjct: 386 DLPAT-CMSGALTHFVSEAPT--------------AKFQPMPPNFGLLPDLPERIRDKRA 430

Query: 459 RRQKRFAKYIQEYNFLRSL 477
           R      + +Q+   +R+L
Sbjct: 431 RYGAYRDRALQDLEPMRAL 449


>gi|58337279|ref|YP_193864.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           NCFM]
 gi|227903865|ref|ZP_04021670.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           ATCC 4796]
 gi|81170598|sp|Q5FKE1|TRMFO_LACAC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|58254596|gb|AAV42833.1| glucose-inhibited division protein [Lactobacillus acidophilus NCFM]
 gi|227868256|gb|EEJ75677.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus acidophilus
           ATCC 4796]
          Length = 438

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 170/489 (34%), Gaps = 75/489 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPKKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADMT------------QVPAGGALAVDRDSFSKYVTDTLKG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +N+ V + E+     +   I  +  +  D        +   +GT               
Sbjct: 112 MDNVTVHEEEIVKIPEDGITIIATGPLTSDAL---AKQIQAFSGT-----------DSLH 157

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L         +++Q+         F  +
Sbjct: 158 FFDAAAPIIAADSIDMDIVYKKSRYDRGEAAYL-----NCPMSKEQY-------EKFANE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N +        I+  A        +GP     +ED     GE    
Sbjct: 206 LIKAETAQLH-GFENSDVFE-GCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKFGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPNV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E K   GLF AGQ+ G  GY E+A  GLVAGIN+AR++   + + F + ++ +G 
Sbjct: 322 LTASYEAKNRPGLFFAGQMTGVEGYVESAGSGLVAGINAAREALGKETVAFPK-NTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           M + +T           T+ A++    +P NA   L P   G K+    ER +K   + +
Sbjct: 381 MANYVT-----------TTSAKH---FQPMNASFALLPALEGKKIRKKRERHEKISERGL 426

Query: 469 QEYNFLRSL 477
              +  ++ 
Sbjct: 427 ASLDAFKTE 435


>gi|296313292|ref|ZP_06863233.1| glucose-inhibited division protein A [Neisseria polysaccharea ATCC
           43768]
 gi|296840214|gb|EFH24152.1| glucose-inhibited division protein A [Neisseria polysaccharea ATCC
           43768]
          Length = 226

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
             R  +Y+GV++DDL +KGV EPYRMFTSRAEYR+ LR DNAD RLT  G K+G +GE +
Sbjct: 1   MRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMRLTEDGYKVGLVGEAQ 60

Query: 461 QKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTS---ISFKQDGKTRTAYEFLSYPDFSIQN 517
            + F +  +        LK+   T + L+      +  ++  +    ++ L  P+     
Sbjct: 61  WRMFNEKREAVEREIQRLKTTWYTPQKLAENEQIRVFGQKLSREANLHDLLRRPNLDYAA 120

Query: 518 LFSICPDAR--KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
           L ++         S+ V+E+++I+  Y  Y  RQ  E    +  E   +P   DY  +  
Sbjct: 121 LMTLEGAMPSENLSAEVVEQVEIQVKYQGYIDRQNEEIDSRRDIETLKLPDGIDYGKVKG 180

Query: 576 LSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           LS E+++KL+  KP  + QAS+I G+TPAA+ LL++++K+ 
Sbjct: 181 LSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLKRG 221


>gi|217076585|ref|YP_002334301.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosipho africanus
           TCF52B]
 gi|226707909|sp|B7IFU6|TRMFO_THEAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|217036438|gb|ACJ74960.1| O tRNA:M(5)U-54 methyltransferase [Thermosipho africanus TCF52B]
          Length = 429

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/460 (21%), Positives = 171/460 (37%), Gaps = 64/460 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V ++G G AG E A    + G    +           HK  T G + C+ ++        
Sbjct: 3   VNIVGAGLAGVEVAYKLLREGFKVRIFEQKPVKFSPVHKMETFGELVCSNSLKSESLKNA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L  E+  LD L+   A    +              G     DRE +   + + + S 
Sbjct: 63  EGILKEEMKLLDSLVLNCAYKTRV------------PAGKALAVDREKFSQCITKVLESF 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+++++ EV   + + N I  +                TG    G       K+  G +
Sbjct: 111 ENIEIVRKEVEKIDLDTNEIWVV---------------ATGPTTDGKFAQWLSKLTGGFL 155

Query: 175 GD----SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
                 +P  S  +      F   R   GT     G  I    T++++  ER        
Sbjct: 156 NFFDAVAPIISRDSIDFNKCFVGDRYGVGT-----GDYINCPMTKEEY--ERFYRELVNA 208

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           + I  +  +  +     +    I ++ + S         +GP     + +     GE   
Sbjct: 209 EMIEMKDFDRKLLFERCQPIEEIAKSGEKS-------LLFGPLRPVGLVNP--HTGEIPY 259

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             I L  E    ++    G  T L    Q + IR IPGLE   I+R G      YI+ P+
Sbjct: 260 AVIQLRKEDEEGNMYNIVGFQTRLKWSEQKRIIRLIPGLENAEILRYGVMHRNTYIDTPR 319

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L   L  KK   +F AGQI G  GY E+AA G+  G+N +R  +  + +      + +G
Sbjct: 320 VLDEFLRHKKYKNIFFAGQITGVEGYLESAACGIYVGLNISRILSGKEPVKLPP-KTMMG 378

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
            +I+ +T    L+P  M+ +     + ++ +    +L  I
Sbjct: 379 ALINYITKADELKP--MYANFGLINVKMKKNEKREKLHEI 416


>gi|327282748|ref|XP_003226104.1| PREDICTED: protein MTO1 homolog, mitochondrial-like [Anolis
           carolinensis]
          Length = 571

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 131/279 (46%), Positives = 176/279 (63%), Gaps = 13/279 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAG +AAA AA+ GA T L+THK S IG MSCNP+ GG+GKGHLVRE+DAL
Sbjct: 2   YDVVVIGGGHAGAKAAAAAARGGARTLLVTHKASGIGQMSCNPSFGGIGKGHLVREVDAL 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL GR+ D +G+ ++VLN  KGPAV G R Q DR+LY+  MQ+EI    +L V +  V 
Sbjct: 62  DGLCGRICDQSGVHYKVLNKGKGPAVWGLRAQIDRKLYKEKMQKEIFQITHLTVCEASVE 121

Query: 126 GFNT--------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                        K  +S ++++D   +   +VVLTTGTFLRG+I IG    PAGRMGD 
Sbjct: 122 DLVLTEPELDHPGKCCVSGVILEDGRKVHAGSVVLTTGTFLRGMILIGLESYPAGRMGDR 181

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT--- 234
           PS  L  +     F  GRLKTGTP RL+ ++I ++  E+Q AD   +PFSF+++ +    
Sbjct: 182 PSIGLAQTLENLGFSLGRLKTGTPPRLEKESIDFNGLEQQTADSSPVPFSFLSEAVWIKP 241

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
             Q+ C +T TN +  +II +N+  ++         GPR
Sbjct: 242 EDQLSCYMTYTNPKVEQIIHDNLHLNSHVRETT--RGPR 278



 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/253 (35%), Positives = 144/253 (56%), Gaps = 8/253 (3%)

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
             QG++AGIN+  +         SRT+ YIGV+IDDLT+ G  EPYRMFTSR E+R+SLR
Sbjct: 289 IRQGIIAGINAGLRVKGKPPFIVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRVEFRMSLR 348

Query: 439 PDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQ 497
           PDNAD+RLT  G  + GC+ + R ++ A+           LKS+  +S   +        
Sbjct: 349 PDNADSRLTFRGYNEAGCVSQHRYEQAAQMKAMIEEGMEALKSVQFSSTKWAQLVPEAAI 408

Query: 498 DGKTR---TAYEFLSYPDFSIQNLFSICPD-ARKFSS--LVIERLQIESSYAAYTGRQMI 551
             +     +A + L Y   +++ L    PD  +KF+    + +RL+IE+ Y  +   Q +
Sbjct: 409 STQRCSLSSALDLLQYQGVNMEVLAKAVPDSLKKFAEWQQLADRLKIEAVYGWHVSNQRL 468

Query: 552 EAKEIKFEEKRLIPKDFDYSSLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           E +E++ +E   +P+D DY ++  +LS E++EKL   +P  +   S+I G+TPAA+  LL
Sbjct: 469 EIEEVQRDEALKLPEDLDYFAINASLSQEVREKLDSHRPQTIGAVSRIPGITPAAVVNLL 528

Query: 611 IYIKKNTVKLNEI 623
            ++K N  ++ ++
Sbjct: 529 RFVKINCKRMKDV 541


>gi|189426314|ref|YP_001953491.1| tRNA (uracil-5-)-methyltransferase Gid [Geobacter lovleyi SZ]
 gi|189422573|gb|ACD96971.1| gid protein [Geobacter lovleyi SZ]
          Length = 443

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 165/491 (33%), Gaps = 73/491 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGG----LG 54
           V +IG G AGCEAA  AA+ G    L   K                 C+ ++ G      
Sbjct: 5   VTIIGAGLAGCEAAWQAAERGLQVRLYEMKPHRYSPAHQCEGLAELVCSNSLRGADLGNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+     L+ + ADA  +              G     DR+L+   +   I S 
Sbjct: 65  VGLLKEELRRCGSLIMQAADATRV------------PAGGALAVDRDLFSAWITERISSH 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            N+ +++ E+    +E  ++  S  +  D      S +V     F   +           
Sbjct: 113 PNITLVREELTCLPSEGLVVIASGPLTSDALAEELSRLVGERLYFYDAI----------A 162

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            +  + S  L        +   R   G P       +     ++Q+     I      +K
Sbjct: 163 PIVTAESLDLSRI-----YAASRYGKGDPD----DYLNCPMDQEQY--AAFIAAVKAAEK 211

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +  R+ E  +                  A    +   +GP     + D     G      
Sbjct: 212 VAPREFEKVVHFDGCMPIE-------EMAARGDETLRFGPMKPVGLPDPA--TGRDPWAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T +    Q + +R IPGLE+   +R G      +IN P  L
Sbjct: 263 VQLRSENNEKTLYNLVGFQTKMTWPEQRRVLRMIPGLEQAEFVRLGVMHRNTFINAPALL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            PT + K    +  AGQI G  GY E+A  G +AG+  A      + +   + ++ +G +
Sbjct: 323 LPTQQLKSDPRIIFAGQITGVEGYVESAGSGFLAGLTVAALVTHEEPVLPPQ-ETALGAL 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           I  +T+    EP              +P N +  L P         +R+     + +   
Sbjct: 382 IHHITN---AEP-----------KHFQPMNVNYGLFPSLTSRVKKKDRKLLLAERALAVL 427

Query: 472 NFLRSLLKSLV 482
              +  +++  
Sbjct: 428 EDWKGRIETRS 438


>gi|289810084|ref|ZP_06540713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 211

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 4/204 (1%)

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           G  EPYRMFTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  L
Sbjct: 3   GTKEPYRMFTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRL 62

Query: 479 KSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIE 534
           KS  +T    S+  ++        +  +  + L  P+ +   L S+   A         E
Sbjct: 63  KSTWVTPSAESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAE 122

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
           +++I+  Y  Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ Q
Sbjct: 123 QVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQ 182

Query: 595 ASKIEGMTPAALNLLLIYIKKNTV 618
           AS+I G+TPAA+++LL+++KK  +
Sbjct: 183 ASRISGVTPAAISILLVWLKKQGM 206


>gi|83593092|ref|YP_426844.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodospirillum rubrum ATCC
           11170]
 gi|123526577|sp|Q2RTI8|TRMFO_RHORT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|83576006|gb|ABC22557.1| Gid protein [Rhodospirillum rubrum ATCC 11170]
          Length = 482

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 159/480 (33%), Gaps = 58/480 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +   + ++GGG AGCEAA  AA+ G    LI  +            +  L   + +R 
Sbjct: 1   MTQHPPLTIVGGGLAGCEAAWQAARAGLRVILIEMRPLRTTEAHLGDGLAELVCSNSLRS 60

Query: 62  ID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            D    A+  L   +  A  +   +    + PA  G     DR+ +  A+ R +     +
Sbjct: 61  DDPLYNAVGLLHEEMRRAGSLILAMAEAHRVPA--GGALAVDRQGFSDAITRALAEHPLI 118

Query: 118 DVIQGEVAGFN-TEK---NIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPA 171
           ++ +GEV      E     I S  +         +     T       I   + K  I  
Sbjct: 119 EIRRGEVDRLPAVEDGPAIIASGPLTSAALAAAIAEATGETSLAFFDAIAPIVHKDSIDF 178

Query: 172 GRMGDSPSNSLFN--SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            R          +   ++       +      A L G+  ++ + E     +  +P   M
Sbjct: 179 DRAWFQSRYDKGDGRDYINCPLTRDQYDAFVDALLAGEKTMFKEWEGTPYFDGCLPIEVM 238

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-R 288
            ++                                 +  ++GP     + D   R    R
Sbjct: 239 AER-------------------------------GRETLAFGPMKPVGLTDP--RNPGLR 265

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +     +    G  T L    Q +  R IPGLE     R G      ++N 
Sbjct: 266 PHAVVQLRQDNALGTLYNMVGFQTKLKHGEQARIFRMIPGLENAEFARLGGIHRNTFLNS 325

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L PTL  K    L  AGQI G  GY E+AA GL+AG  ++ +             + 
Sbjct: 326 PRLLDPTLRLKARPHLRFAGQITGCEGYVESAAIGLLAGRFASAEILDAASFAPPPPTTA 385

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRIS----LRP--DNADNRLTPIGMKLGCIGERRQ 461
           +G ++  +T     E ++       + +      RP    A  R  P G +      RR 
Sbjct: 386 LGGLLGHITGGANAETFQ--PMNVNFGLLPPLEARPVRPGAKPR-VPKGRERKLESARRA 442


>gi|116251819|ref|YP_767657.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|205830322|sp|Q1MHL2|TRMFO_RHIL3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|115256467|emb|CAK07551.1| putative glucose inhibited division protein A [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 477

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/491 (18%), Positives = 152/491 (30%), Gaps = 78/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + V+GGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 10  IHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+     L+   AD                  G     DR+ +  A+ + +  
Sbjct: 70  AVGVIHAEMRMAGSLIMAAADRC------------QVPAGGALAVDRDGFSEAVTKAVHD 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI---------- 162
              + V++ EV G       ++ +      +    S +   TG                 
Sbjct: 118 HPLITVVREEVTGLPPRDWDLAIVATGPLTAPSLASAIQTETGEDSLAFFDAIAPIVYRE 177

Query: 163 -HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++    D  +      A + G T+ + + E     +
Sbjct: 178 SIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALILGDTVGFKEWEGTPYFD 237

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 238 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 266

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q    R IPGLE     R G   
Sbjct: 267 HNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLENAEFARLGGLH 325

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I 
Sbjct: 326 RNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKG-EAIS 384

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
                + +G ++  +T   ++      T     + S +P N +  L P       +    
Sbjct: 385 LPPATTALGSLLGHITGGHLV------TDEEPGKRSFQPMNINFGLFPELQPGSIVKPEG 438

Query: 461 QKRFAKYIQEY 471
            KRF    +  
Sbjct: 439 VKRFRGKDKTI 449


>gi|171779421|ref|ZP_02920385.1| hypothetical protein STRINF_01266 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282038|gb|EDT47469.1| hypothetical protein STRINF_01266 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 445

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 163/497 (32%), Gaps = 83/497 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIG 51
           M   SY + VIG G AG EAA   AK G    L           HKT     + C+ ++ 
Sbjct: 1   MSQSSY-INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHKTDKFAELVCSNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G L  E+  LD ++ + A++  I              G     DR+ +   +
Sbjct: 60  GDSLTNAVGLLKEEMRRLDSVIMKAAESTRI------------PAGGALAVDRDGFSQMV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             E+ +   +++I+ E+     +   +             ++  LT+      +  +   
Sbjct: 108 TDEVTNHPLIEIIREEITEVPNDAITVI------------ASGPLTSDALAAKIHELNGG 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +  M   +   R   G  A L+                +    +
Sbjct: 156 DGFYFYDAAAPIVDKSSIDMDKVYLKSRYDKGEAAYLNCPM------------TKEEFMA 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    +   +    +     E +      I+  A        YGP     +E      G 
Sbjct: 204 FHEALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGP 261

Query: 288 R------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           R          + L  +     +    G  T L    Q +  R IPGLE    +R G   
Sbjct: 262 RDGEFKTPYAVVQLRQDNAAGSLFNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMH 321

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P  L  T  T++   LF AGQ+ G  GY E+AA GLVAGIN+ R+    + + 
Sbjct: 322 RNSYMDSPNLLTETFATRQNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFKGEEPVI 381

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
           F +T + IG +   +T                               P+ +  G I E  
Sbjct: 382 FPQTTA-IGALPHYITHAESK-----------------------HFQPMNVNFGIIKELE 417

Query: 461 QKRFAKYIQEYNFLRSL 477
             R     + Y  +   
Sbjct: 418 GPRIRDKKERYEKVAER 434


>gi|209549101|ref|YP_002281018.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534857|gb|ACI54792.1| gid protein [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 153/491 (31%), Gaps = 78/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + V+GGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 10  IHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+     L+   AD                  G     DR+ +  A+ R I  
Sbjct: 70  AVGVIHAEMRMAGSLIMATADRH------------QVPAGGALAVDRDGFSEAVTRAIHD 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI---------- 162
              + V++ E+ G       ++ +      +    S +   TG                 
Sbjct: 118 HPLITVVREEITGLPPGDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVYRE 177

Query: 163 -HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++    D  +      A + G T+ + + E     +
Sbjct: 178 SIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALISGDTVGFKEWEGTPYFD 237

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 238 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 266

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q +  R IPGLE     R G   
Sbjct: 267 HNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLENAEFARLGGLH 325

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I 
Sbjct: 326 RNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKG-EAIS 384

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
                + +G ++  +T   ++      T     + S +P N +  L P       +    
Sbjct: 385 LPPATTALGSLLGHITGGHIV------TDEEPGKRSFQPMNINFGLFPELQPGSIVKPEG 438

Query: 461 QKRFAKYIQEY 471
            KRF    +  
Sbjct: 439 VKRFRGKDKTI 449


>gi|209964368|ref|YP_002297283.1| glucose inhibited division protein [Rhodospirillum centenum SW]
 gi|209957834|gb|ACI98470.1| glucose inhibited division protein [Rhodospirillum centenum SW]
          Length = 457

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 158/482 (32%), Gaps = 68/482 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +  +  + ++G G AG EAA   A+ G    L           H+T     + C+ +   
Sbjct: 1   MTDTAPIHIVGAGLAGSEAAWQIAQAGIPVVLHEMRPVRRTDAHQTDRCAELVCSNSFRS 60

Query: 53  -----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+     L+    DA           K PA  G     DR+ +  A+
Sbjct: 61  DDAEYNAVGLLHEEMRRCGSLILTTGDA----------HKVPA--GGALAVDRDGFADAV 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   + + +GE+ G          +              LT+    R ++ +   
Sbjct: 109 TAALEAHPLIRIERGELTGLPPADWDSVVVAT----------GPLTSPDLARAILDLTGE 158

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA-------D 220
              +     +P     +  +   +   R     P       I     ++Q+        D
Sbjct: 159 AQLSFFDAIAPIVYFESIDLTKAWFQSRYDKEGPGGTGKDYINCAMDKEQYLAFIQALLD 218

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
                F    +K T     C                I+  A    D   YGP     + D
Sbjct: 219 APKTEFK-DWEKDTPYFEGC--------------LPIEVMAERGVDTLRYGPMKPVGLTD 263

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
                  R    + L  +     +    G  T L    Q +  R IPGLE     R G  
Sbjct: 264 P--HTARRPYAVVQLRQDNALGTLYNLVGFQTKLKYAEQTRVFRMIPGLENAEFARLGGM 321

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++N P+ L P L  K +  L  AGQI G  GY E+AA GL+AG  +A +    D I
Sbjct: 322 HRNTFLNSPRLLDPVLRLKAMPRLRFAGQITGCEGYVESAAVGLLAGRFAAAERLGRDPI 381

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
               T + +G +++ +T     E ++           L P   D R  P G +L     +
Sbjct: 382 IPPATTA-LGALLNHITGGAEAETFQPMN----VNFGLFPP-LDAR-QPNGKELHGKDRK 434

Query: 460 RQ 461
           R 
Sbjct: 435 RA 436


>gi|309809274|ref|ZP_07703143.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170387|gb|EFO72411.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 437

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 166/487 (34%), Gaps = 74/487 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            N+ V   E+     +   I  +  +  D    +      +        +H         
Sbjct: 113 PNVHVHNEEIKDIPKDGINIIATGPLTSDLLATKIKEFCGSE------SLHFFDAA---- 162

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  +  +      +   R   G  A L          ++QF +       F  + 
Sbjct: 163 ----APIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNL 206

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           IT    E      N          I+  A        +GP     +ED   + G+     
Sbjct: 207 ITAETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L
Sbjct: 263 VQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M
Sbjct: 323 NSTYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSM 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQE 470
            + +TS                  + +P NA   L P +  K+    ER   +    + E
Sbjct: 382 ANYITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDE 427

Query: 471 YNFLRSL 477
            N  ++ 
Sbjct: 428 LNEFKNK 434


>gi|161507473|ref|YP_001577427.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus helveticus
           DPC 4571]
 gi|205830338|sp|A8YV48|TRMFO_LACH4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|160348462|gb|ABX27136.1| Glucose-inhibited division protein A [Lactobacillus helveticus DPC
           4571]
          Length = 407

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 157/461 (34%), Gaps = 73/461 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGGL---- 53
           +V VIG G AG EA    AK G    L   +               + C  ++       
Sbjct: 4   NVTVIGAGLAGSEATWQLAKRGIHVDLYEMRPQKETPAHETGEFAELVCTNSMRSNQLSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD L+ + AD                  G     DR+ +   +   +  
Sbjct: 64  AVGLLKEEMRHLDSLIMKAADKT------------QVPAGGALAVDRDSFSKYVTDTLRG 111

Query: 114 QENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +N+ V + E+     +   I  +  +  D        +   +GT     +H        
Sbjct: 112 LDNVTVHEEEITEIPEDGITIIATGPLTSDAL---AEQIQKFSGT---DSLHFFDAA--- 162

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                +P  +  +  M   +   R   G  A L+                +    +F  +
Sbjct: 163 -----APIVAADSIDMNIVYKKSRYDRGEAAYLNCPM------------NKEQYENFTRE 205

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
            I     +      N          I+  A        +GP     +ED     GE    
Sbjct: 206 LIKAETAQLHGFEKND--VFEGCMPIEVMAARGAKTMLFGPLKPVGLEDP--HTGETPYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKE 350
            + L  +     +    G  T L    Q +    IPGLE    +R G      Y+ +P  
Sbjct: 262 VVQLRQDNAAASMYNIVGFQTHLKYGEQKRVFSMIPGLENARFVRYGKMHRNTYMASPDV 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  + E KK  GLF AGQ+ G  GY E+A  GLVAG+N+AR++   + I F + D+ +G 
Sbjct: 322 LTASYEAKKRPGLFFAGQMTGVEGYVESAGSGLVAGVNAAREALGEEPIAFPK-DTALGS 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
           M + +T           T+ A++     P NA      +G 
Sbjct: 381 MANYVT-----------TTSAKH---FPPMNASLHFYLLGK 407


>gi|253573512|ref|ZP_04850855.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847040|gb|EES75045.1| tRNA:m(5)U-54 methyltransferase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 440

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 167/496 (33%), Gaps = 81/496 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N+   V VIG G AG EAA   A  G    L           H T     + C+ ++ 
Sbjct: 3   MTNK---VTVIGAGLAGSEAAWQIASRGIPVVLYEMRPVVKTPAHHTDKFAELVCSNSLR 59

Query: 52  GLG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
             G     G L  E+  L+ L+   AD            +     G     DR+ +   +
Sbjct: 60  ANGLTNAVGVLKEEMRMLNSLVLGAAD------------RNAVPAGGALAVDRDGFSGEI 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            R +     ++VI  E+     +  ++             +T  LT+      +  +   
Sbjct: 108 TRTLREHPLIEVINEEIKEIPQDGIVVI------------ATGPLTSPALSEQIKRLTGE 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +  M   +   R   G  A L         TE++F  +      
Sbjct: 156 DYFYFYDAAAPIVEKDSIDMSKVYLASRYDKGEAAYL-----NCPMTEEEF--DAFYDAL 208

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              +    +  E  I         ++M               +GP     + +     G+
Sbjct: 209 IHAEVAQLKDFEKEIYFEGCMPIEVMM-------RRGKQTALFGPMKPVGLVNP--HTGK 259

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
                + L  +     +    G  T L    Q +    IPGLE    +R G      +IN
Sbjct: 260 LPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFIN 319

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L PT + K    LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F    +
Sbjct: 320 SPKLLMPTYQLKARPSLFFAGQMTGVEGYVESAASGLIAGINAARAAAGQEGIVFPADTT 379

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G M   +T+                    +P NA+  L P         + R ++ A+
Sbjct: 380 -LGSMARYITTADFEH--------------FQPMNANFGLFPKL-------DTRYRKKAE 417

Query: 467 YIQEYNFLRSLLKSLV 482
             +     +  L SL 
Sbjct: 418 KNEAL--AQRALNSLR 431


>gi|309804175|ref|ZP_07698253.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|312875488|ref|ZP_07735491.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2053A-b]
 gi|315653523|ref|ZP_07906444.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus iners ATCC 55195]
 gi|308163758|gb|EFO66027.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           11V1-d]
 gi|311088999|gb|EFQ47440.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LEAF 2053A-b]
 gi|315489214|gb|EFU78855.1| tRNA:M(5)U-54 methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 437

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 166/487 (34%), Gaps = 74/487 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            N+ V   E+     +   I  +  +  D    +      +        +H         
Sbjct: 113 PNVHVHNEEIKDIPKDGINIIATGPLTSDLLATKIKEFCGSE------SLHFFDAA---- 162

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  +  +      +   R   G  A L          ++QF +       F  + 
Sbjct: 163 ----APIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNL 206

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           IT    E      N          I+  A        +GP     +ED   + G+     
Sbjct: 207 ITAETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +  +  +    G  T L    Q +    IPGL     +R G      YI+ P+ L
Sbjct: 263 VQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             T ETK    LF AGQ+ G  GY E+A  GLVAGIN++ ++     I F + ++ IG M
Sbjct: 323 NSTYETKLCKNLFFAGQMTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSM 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQE 470
            + +TS                  + +P NA   L P +  K+    ER   +    + E
Sbjct: 382 ANYITSTSA--------------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDE 427

Query: 471 YNFLRSL 477
            N  ++ 
Sbjct: 428 LNEFKNK 434


>gi|258645673|ref|ZP_05733142.1| tRNA:M(5)U-54 methyltransferase [Dialister invisus DSM 15470]
 gi|260403040|gb|EEW96587.1| tRNA:M(5)U-54 methyltransferase [Dialister invisus DSM 15470]
          Length = 432

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 163/498 (32%), Gaps = 96/498 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG----LG 54
           V VIG G AG EAA   A++G    L           H T     + C+ +         
Sbjct: 4   VTVIGAGLAGSEAAWQLAEMGVPVKLAEMRPAIGTPAHHTGYCAELVCSNSFRAAALTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   ADA  +              G     DR  Y  A+ ++I S 
Sbjct: 64  VGLLKEEMRRLGSVIMECADAHRV------------PAGGALAVDRNGYAAAVTKKIKSH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG-- 172
             ++ +  E+     E  +I                 + TG    G +     K   G  
Sbjct: 112 PLIEFVNEEIREIPEEGIVI-----------------IATGPLTDGALAKSIEKFCGGEG 154

Query: 173 ---RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
                  +P     +  M   +   R   G  A L+                       M
Sbjct: 155 LHFYDAAAPIVMKESLDMDIVYRMSRYNKGEAAYLNCP---------------------M 193

Query: 230 TDKITNRQIECGITRTNLETHRIIMENI-------KHSAIYSGDIKSYGPRYCPSIEDKI 282
            ++  N   E   T    E H     N+       +  A    D   +GP     + D  
Sbjct: 194 NEEEYNAFYEALRTAETAEVHGFEEGNVFEGCMPVEVMAQRGKDTMRFGPMKPVGLPDP- 252

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            R G+     + L  +     +    G  T L    Q +    IPGL     +R G    
Sbjct: 253 -RTGKEPYAVVQLRQDNEEDTMYNIVGFQTHLKWGEQKRVFGMIPGLAGAEFVRYGVMHR 311

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             YI+ P  L  T+ET+   GLF AGQ+ G  GY E+AA G+ A  ++  ++   +   F
Sbjct: 312 NTYIHSPDLLEATMETRARKGLFFAGQMTGVEGYVESAASGIAAAYSAFARAAGKEPRAF 371

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
            + ++ IG +   ++                   + +P N +  L P    L    ++R+
Sbjct: 372 PK-ETAIGALCHYISHF--------------IGKNFQPMNVNFGLLP---PLPEKVKKRE 413

Query: 462 KRFAKYIQEYNFLRSLLK 479
           K      +  + L   +K
Sbjct: 414 KNERLAARALSVLDEFIK 431


>gi|257869683|ref|ZP_05649336.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus gallinarum
           EG2]
 gi|257803847|gb|EEV32669.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus gallinarum
           EG2]
          Length = 435

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 170/484 (35%), Gaps = 71/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA  AA+ G +  L           H T+    + C  ++ G      
Sbjct: 4   INVIGAGLAGSEAAWQAAEAGVAVNLYEMRPKKTTEAHHTNNFAELVCTNSLRGNNLTNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   + + +   
Sbjct: 64  VGVLKEEMRRLNSVIISSADQTAV------------PAGGALAVDRDDFSELVTKRVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ E+        +I++  +   S      +    G+   G          A  +
Sbjct: 112 PLVTVIEEEITEIPEGITVIATGPLT--SEPLSKAIQAFNGS--EGFYFYD----AAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            D  +  +   ++K      R   G  A L+                    ++F    + 
Sbjct: 164 IDKSTIDMDKVYLK-----SRYDKGEAAYLNCPM------------NEEEFYAFREALVN 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                  +     E        I+  A        +GP     +ED   + G+R    I 
Sbjct: 207 AEVAP--LKEFEKEKFFEGCMPIEVMASRGPKTMLFGPMKPVGLEDP--KTGKRPYAVIQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+   +R G      ++N P+ L  
Sbjct: 263 LRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEQAEFVRYGVMHRNSFMNSPELLQQ 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +++K   LF AGQ+ G  GY E+AA GLVAGIN+A+ +   + I F +  + IG M  
Sbjct: 323 TYQSRKRDDLFFAGQMTGVEGYVESAASGLVAGINAAKLAKGEEPIIFPQETT-IGSMAY 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
            +T                     +P NA+  L P +  ++     R +    + +    
Sbjct: 382 YITHAE--------------GKHFQPMNANFGLLPELPERIKDKKSRYEALANRALTALE 427

Query: 473 FLRS 476
             + 
Sbjct: 428 AAKE 431


>gi|123966440|ref|YP_001011521.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9515]
 gi|205830320|sp|A2BXA3|TRMFO_PROM5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123200806|gb|ABM72414.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9515]
          Length = 467

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 115/512 (22%), Positives = 178/512 (34%), Gaps = 76/512 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+N+   VIVIG G AGCEAA   A  G    L+          H TS  G + C+ + G
Sbjct: 1   MLNKE--VIVIGAGLAGCEAAWQIANSGVEVKLVEMRPIHSTPAHHTSEFGELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+   + L+   AD                  G     DR  +  ++
Sbjct: 59  ALSTDRAAGLLQEELRTFNSLIINTADE------------FSVPAGGALAVDRSKFSKSL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + + +   +++ + E      +  I              +T  LT+      + +   L
Sbjct: 107 TQTLSNHPLVEIKRFEQLDLPDKNRITV-----------IATGPLTSNELANKLKNFTGL 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP            F   R   G PA L+                ++   +
Sbjct: 156 DSCHFFDAASPIIYGETINYDIAFRASRYDKGDPAYLNCPM------------NKIDYLN 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
           F    I   Q                   I+  A    D   YGP             + 
Sbjct: 204 FRNALIEAEQATLKDFEKESANFFEACLPIEEMARRGVDTMRYGPLKSIGLWNPKWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRENRLKKRPHAIVQLRKEDLKGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  PK L PTL+  K   LF AGQI GT GY  AA+ GL+AG+N++  +N    
Sbjct: 324 MHRNTFLESPKLLLPTLQFLKRENLFAAGQITGTEGYAAAASGGLLAGLNASLLANNKSP 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F   +S IG +++ +++K                  +      N+  P+    G + E
Sbjct: 384 VTFPD-ESMIGALMNFISNKNE----------------IMSQQKKNKFQPMPASFGLVPE 426

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
              K   K ++   + +  L+ L    K L S
Sbjct: 427 LNNKIKDKKLRYKAYQKRSLEVLKEFKKVLDS 458


>gi|319937630|ref|ZP_08012034.1| tRNA (Uracil-5-)-methyltransferase gid [Coprobacillus sp. 29_1]
 gi|319807272|gb|EFW03884.1| tRNA (Uracil-5-)-methyltransferase gid [Coprobacillus sp. 29_1]
          Length = 432

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 167/480 (34%), Gaps = 55/480 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EA     K G    L   +   +     +     L   + +R     +A
Sbjct: 4   VNVIGAGLAGVEAVHQLIKQGIPVRLYEMRPVKMTDAHESEYFAELVCSNSLRADGLGNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     I  +     + PA  G     DR  +  A+   I +   ++VI  EV
Sbjct: 64  VGVLKEEMRMNESIIMKFAEEHRVPA--GGSLAVDRIGFSKAVTEYISTHPLVEVIHEEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   II             ++  LT+    R +  +            +P  +  +
Sbjct: 122 HSIPLGPTII-------------ASGPLTSEPLSRSIQDLLNEDYFYFYDAAAPIVTKES 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  +   R   G     D + I    TE+Q        F    D + N ++      
Sbjct: 169 INFEIAYYKSRYDKG-----DAEYINCPMTEEQ--------FDLFYDALMNAEVVKPKDY 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E         +  A        +GP     +E      G+R+   + L  +     +
Sbjct: 216 --EEKFFEGCMPFEEMARRGKQTLLFGPMKPVGLEKDG---GKRSHAVVQLRQDNAVGTL 270

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q + I  IPGLE   I+R G      +I +P+ L PT +  +   L
Sbjct: 271 YNIVGFQTHLKWPEQDRIIHMIPGLENAKIVRYGVMHRNCFICSPRYLKPTYQFIEREDL 330

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+A  G+VAG+N  R  +  + + F R ++ +G +   +T       
Sbjct: 331 FFAGQMTGVEGYVESAQSGMVAGMNMVRYLHNQELLVFPR-ETVMGSLAYYITHGDET-- 387

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P  A+  + P  + +    + R+  +A   +    ++  LK   +
Sbjct: 388 ------------NFQPMKANFGILP-DLAIRVKKKERKDAYA--TRAIKKMKEFLKDESI 432


>gi|119511325|ref|ZP_01630439.1| Gid protein [Nodularia spumigena CCY9414]
 gi|119464031|gb|EAW44954.1| Gid protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 163/481 (33%), Gaps = 67/481 (13%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G                H T  +  + C+ + G +      G
Sbjct: 8   VIGGGLAGTEAAWQIAQAGVPVIFHEMRPKRFSPAHHTEHLAELVCSNSFGAMASDRATG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L+ ++   AD   +              G     DR  +   +   + +   
Sbjct: 68  LLHEELRQLNSIVISKADEHAV------------PAGGALAVDRGKFSQDLTETLSNHPL 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++  +GEV            +V+            LT+      +  +  ++  +     
Sbjct: 116 IEFRRGEVPAIPEGI-----VVLATG--------PLTSPDLAADLHRVTGIEYLSFFDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L+                +     F T+     
Sbjct: 163 SPIVVGESINHDVAFMASRYDKGEAAYLNCPM------------NKEQYLHFWTELRQAE 210

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q E                 I+  A    D   YGP     + D   R GER    + L 
Sbjct: 211 QTEIKDFERETAKFFEACLPIEEQAHRGEDTMRYGPLKPVGLSDN--RTGERPYAVVQLR 268

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TL 355
            E     +    G  T L    Q +  R IPGLE    +R G      ++N  +L   TL
Sbjct: 269 QEDKAGQLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRLGVMHRNTFLNAPQLMHSTL 328

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  AAA G +AG N+AR +   + +    T + +G +++ +
Sbjct: 329 QFKQRPTLLAAGQLIGTEGYTAAAADGWLAGTNAARIALGKEPLTAPPT-TMMGALLEFI 387

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           +S     P         + I          L  +G+K+    ER  +   + + +    +
Sbjct: 388 SSAS---PKHFQPMPPNFGI----------LPDLGVKIKSKPERYGRYRDRSLADLASWK 434

Query: 476 S 476
           +
Sbjct: 435 N 435


>gi|253795565|ref|YP_003038661.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739873|gb|ACT34208.1| putative glucose-inhibited division protein A [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 504

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/410 (30%), Positives = 201/410 (49%), Gaps = 8/410 (1%)

Query: 33  LITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           ++      +G ++CNPA GG  K HL+ E+  L G      DA+     VL+  +G A R
Sbjct: 31  VLAVSGGDVGKLACNPAFGGAAKSHLMCELACLGGKTPAAVDASAAHADVLSPNRGRAAR 90

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             R Q D +L++LA      +   +  ++ E    +  +  +  + + D S I+ S +V+
Sbjct: 91  ALRLQVDSQLFKLATAS---ATAGVSKLKPEALSVSWRQQRVH-VALADGSWIQASALVI 146

Query: 153 TTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW- 211
            TGTF RGV H+G+  +  G++G S ++ L ++  +    T R KTGTP  +  +++ W 
Sbjct: 147 ATGTFSRGVCHVGECTLALGKIGASRADCLTSALRQHGVKTRRFKTGTPPWVLKQSVRWR 206

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
                Q +  R    S    +     + C    T   T  +I    + ++  +G +   G
Sbjct: 207 SAISLQSSSFRYCFGS--RSRAAFPSLCCKTMHTRKPTSTVIASCTRWASPQAGKLLGRG 264

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           P  C SIE +I   G R    + +E EG+    VY NG  T+LP E Q   ++T+  L  
Sbjct: 265 PTRCTSIESRIASAGARPQR-LIMEAEGVAKQGVYLNGAFTSLPVEAQALALKTVGALTT 323

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
               + GYA+EYD +   +L   LE  + +G+F+AGQ+ G+TGYEEA  QG VAG+N+AR
Sbjct: 324 AQFTKVGYAVEYDVVCSNQLSRALELARSAGVFVAGQLAGSTGYEEACVQGWVAGVNAAR 383

Query: 392 KSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           +   +  I  S T S+ G++   +T   +  PY M       R  L+  N
Sbjct: 384 RCQNMPLIALSFTASFAGLLTFKMTQHALKAPYSMACESVPNRARLKQRN 433


>gi|163868075|ref|YP_001609279.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella tribocorum CIP
           105476]
 gi|205830324|sp|A9ISB8|TRMFO_BART1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161017726|emb|CAK01284.1| gid-family protein [Bartonella tribocorum CIP 105476]
          Length = 474

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 95/484 (19%), Positives = 173/484 (35%), Gaps = 41/484 (8%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           + +++D  + +IGGG AGCEA+   A+ G    L   +            +  L   +  
Sbjct: 1   MLKTFDTPIHIIGGGLAGCEASWQIAQSGIPVILHEMRPQKKSDAHKTDKLAELVCSNSF 60

Query: 60  R----EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R      +A+  L   +  A  +  +  +  K PA  G     DR+ +   +   + +  
Sbjct: 61  RCDDSSTNAVGLLHAEMRLAKSLIMKAADANKVPA--GSALAVDRDGFSKTVTSALENHS 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + + + EV   + +      +              LT+  F + +  I  +K  +    
Sbjct: 119 LITIKREEVQEIS-KDWKHVIVAT----------GPLTSPAFAQELKAITGIKALSFFDA 167

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P       +     ++Q+  E  +      +K   
Sbjct: 168 IAPIIHTDSIDMNICWYQSRYDKIGPEGTGKDYLNCPLNKEQY--ETFVEALKNAEKTEF 225

Query: 236 RQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           R           +T        I+  A    +   +GP     + +       +    + 
Sbjct: 226 RDF--------EKTPYFDGCLPIEIMAERGLETLRHGPMKPMGLTNAYNPTV-KPYAVVQ 276

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLEK    R G      Y+N P  L  
Sbjct: 277 LRQDNKLGTLYNMVGFQTKLKYGEQVRIFRMIPGLEKAEFARLGGLHRNTYLNSPIILDQ 336

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL  K+   L  AGQI G  GY E+AA GL+AG  +A + +        +T ++ G +++
Sbjct: 337 TLRLKQKKQLRFAGQITGCEGYVESAAIGLLAGRFAAAEYHHNCPCLPPQTTAF-GALLN 395

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T   +++        AE R S +P N +  L P    +   G+ R     K + +   
Sbjct: 396 HITGGHIID------EEAE-RPSFQPMNINFGLFPPISPIRYSGK-RLPSKEKKLAKKQA 447

Query: 474 LRSL 477
           + + 
Sbjct: 448 ITAR 451


>gi|254416490|ref|ZP_05030242.1| tRNA:m(5)U-54 methyltransferase [Microcoleus chthonoplastes PCC
           7420]
 gi|196176694|gb|EDX71706.1| tRNA:m(5)U-54 methyltransferase [Microcoleus chthonoplastes PCC
           7420]
          Length = 452

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 106/493 (21%), Positives = 165/493 (33%), Gaps = 75/493 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKG 56
           VIGGG AG EAA   A+ G S  L           H T  +  + C+ + G        G
Sbjct: 8   VIGGGLAGTEAAWQIAQAGVSVVLHEMRPVQMSPAHHTGELAELVCSNSFGALSSDRAAG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++   AD   +              G     DR ++   +   + S   
Sbjct: 68  LLHEELRRLDSIVIAKADNHAV------------PAGGALAVDRGVFSHDLTETLASHPL 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +++ +GEV     +      +V+            LT+      +     +   +     
Sbjct: 116 IELRRGEVPQIPPDGV----VVLTTG--------PLTSPALATDLQRFTGMDYFSFFDAA 163

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L+                R     F  +     
Sbjct: 164 SPIVVGESINQDIAFMASRYDKGEAAYLNCPM------------NREEYLRFWQELCQAE 211

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--------- 287
           + E                 I+  A    D   YGP     + D   R G+         
Sbjct: 212 KAEVKDFEQETAKFFEGCLPIEEMARRGEDTMRYGPLKPVGLFDS--RQGDFRAPENQSK 269

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  E     +    G  T L    Q +  R IPGLE    +R G      +IN
Sbjct: 270 RPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFIN 329

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P+ L+PTL+ K    L  AGQ+ GT GY  A+A G +AG N+AR    L+ I    T +
Sbjct: 330 SPELLYPTLQFKNRPTLLAAGQLMGTEGYTAASAGGWLAGTNAARLVLGLEPITLPPT-T 388

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G + + ++S     P         + I          L P+G+++    ER      +
Sbjct: 389 MMGALFEFISSAS---PKHFQPMPPNFGI----------LPPLGVRIKGKKERYGAYRDR 435

Query: 467 YIQEYNFLRSLLK 479
            + +    R   +
Sbjct: 436 ALADLQSWRQKCQ 448


>gi|126696561|ref|YP_001091447.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9301]
 gi|205830315|sp|A3PDM1|TRMFO_PROM0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|126543604|gb|ABO17846.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9301]
          Length = 470

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 113/513 (22%), Positives = 179/513 (34%), Gaps = 86/513 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+++   V+VIG G AG EAA   A  G    L+          H TS  G + C+ + G
Sbjct: 1   MLDKE--VLVIGAGLAGSEAAWQLANSGVPVKLVEMRPIKSTPAHHTSEFGELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L +E+     L+ + AD            K     G     DR  +  A+
Sbjct: 59  ALSPDRAAGLLQKELRFFKSLIVQTAD------------KFAVPAGGALAVDRSKFSYAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             ++ +   +++ + E     +E+NI    ++            LT       +     +
Sbjct: 107 TEQLSNHPLVEIKRFEQLDIPSEENIT---ILATG--------PLTADDLSYKIQDFTGI 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP     +   +  F   R   G PA L+               +      
Sbjct: 156 DDCHFFDAASPIIYGDSIDQEIVFKASRYDKGDPAYLNCPM------------DENKYIH 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
           F  + I   Q                   I+  A    D   YGP             + 
Sbjct: 204 FRNELIEGEQANLKDFEKESANFFEACLPIEEIARRGVDTMRYGPLKSIGLWNPKWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRENRLKKRPHAVVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +     
Sbjct: 324 MHRNTFLESPKLLLPTLQFMKRENLFAAGQITGTEGYAAAAAGGLLAGINASLLAKGKKP 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F   +S IG +++ +++K                  +  +   N+  P+    G + E
Sbjct: 384 VSFPD-ESMIGSLMNFISNKNQ----------------ILSNQKKNKFQPMPASFGLVPE 426

Query: 459 ---------RRQKRFAKY-IQEYNFLRSLLKSL 481
                     R K + +   +  N  ++ L S 
Sbjct: 427 LTKRIKDKRLRYKAYQERSTEALNDFKNKLDSC 459


>gi|33240036|ref|NP_874978.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|81664815|sp|Q7VD04|TRMFO_PROMA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33237562|gb|AAP99630.1| NAD(FAD)-utilizing enzyme possibly [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 468

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/503 (20%), Positives = 174/503 (34%), Gaps = 70/503 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + +S  ++VIG G AG EAA   A  G    LI          H ++    + C+ + G 
Sbjct: 1   MGQSTPLLVIGAGLAGSEAAWQIASAGIPVKLIEMRPCKRSPAHHSNDFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L   + + AD                  G     DR  +   + 
Sbjct: 61  LSSDRASGLLQEELRILKSFVIKTADEH------------SVPAGGALAVDRNKFSSYIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           ++I S   + V + E+     E  I    V+            LT+      + +   L+
Sbjct: 109 KKISSHPLITVQRDEIHSLPFENQIS---VLATG--------PLTSEHLAGDLKNFTGLE 157

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP     +      F   R   G     D   +     + Q+         F
Sbjct: 158 ECHFFDAASPIIEGESIDFSLAFRASRYDKG-----DADYVNCPLNKDQY-------LKF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE- 287
            ++ ++  Q E       +         I+  A    D   YGP     + D   R+G+ 
Sbjct: 206 RSELLSADQAEIKDFEKGVSNLFEGCLPIEELARRGEDTMRYGPLKPVGLWDN--RWGDL 263

Query: 288 ---------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
                    R    + L  E  N  +    G  T L    Q + IR IPGL+K   +R G
Sbjct: 264 HDKELRKTKRAYAVVQLRQEDKNGHLWNLVGFQTNLKWGEQKRIIRLIPGLQKAEFVRLG 323

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +I  PK L PTL+ +K   L  AGQI GT GY  A A G +AG N+A  +    
Sbjct: 324 VMHRNTFIESPKLLNPTLQFRKRLNLLAAGQITGTEGYAAAVAGGWLAGTNAALIAMNRK 383

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCI 456
            I    T + IG +++ ++             ++ ++   +P   +  L P +  ++   
Sbjct: 384 PITLPET-TMIGALLNFISEVSPK-------VKSNHKRDFQPMPPNFGLLPELNRRIRDK 435

Query: 457 GERRQKRFAKYIQEYNFLRSLLK 479
             R      + +++    +  L+
Sbjct: 436 RCRYGAYRDRALEDIKKTQEFLE 458


>gi|325116388|emb|CBZ51941.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           related [Neospora caninum Liverpool]
          Length = 819

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/225 (41%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD--- 231
            +  ++ L  S     F  GR KTGTPARL   ++ +   ++Q +D    PFSF+     
Sbjct: 367 QEKSASELSASLRSLGFALGRFKTGTPARLYRHSVDFGSLQEQPSDRSPSPFSFLNSPSR 426

Query: 232 --KITNRQIECGITRTNLETHRIIMENIKHSAIY--SGDIKSYGPRYCPSIEDKIVRFGE 287
             K+    + C +T TN ETH I+  ++     +      +  GPRYCPSI  K++RF +
Sbjct: 427 LLKVHPSTVSCHLTYTNRETHAIVRSHLDELPEHSGGEGRRGLGPRYCPSIATKVLRFPD 486

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R  H ++LEPEG ++ ++YPNG+S A     Q   +R+I GLE V +  P Y +EYD++ 
Sbjct: 487 RPRHAVWLEPEGRDSPLIYPNGLSGAFSPATQLALLRSIKGLENVEMSAPAYDVEYDFVW 546

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           P  L  +LETK ++GLFLAGQ+ GTTGYEEAAA GL+AG N+A +
Sbjct: 547 PSSLSISLETKAVAGLFLAGQVIGTTGYEEAAAMGLLAGWNAALR 591



 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV V+G GHAG EAA  +A++GA T L+T    T+G +SCNP+IGG+GKG LV E+DA 
Sbjct: 42  FDVCVVGAGHAGLEAALASARVGALTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDAF 101

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL---SQENLDVIQG 122
            G +GR AD A I +RVLN  +GPA  G R Q DR++Y+  +  E+    ++    +++G
Sbjct: 102 GGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRKIYKRVVGNEVRDRVARGEFALVEG 161

Query: 123 EVAGFNTEKNI 133
                  E   
Sbjct: 162 RATALLVEDER 172



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
             I  +R    IGV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G +
Sbjct: 691 PAISLNREKFLIGVCAHDLTQTGVEEPYRMFASRSECRLSTRPDNADFRCIDTALRGGIV 750

Query: 457 GE-RRQKRFAKYIQEYNFLRSLLKS 480
            +  R +   +  Q+   L   L+ 
Sbjct: 751 RDAERIESTRRRRQKAESLLHFLRP 775


>gi|282897627|ref|ZP_06305627.1| Gid protein [Raphidiopsis brookii D9]
 gi|281197550|gb|EFA72446.1| Gid protein [Raphidiopsis brookii D9]
          Length = 452

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 172/482 (35%), Gaps = 69/482 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +      G
Sbjct: 12  VIGGGLAGTEAAWQIAQAGVPVILHEMRPQRFSPAHHTENLAELVCSNSFGAMASDRAAG 71

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++   AD   +              G     DR  +   + + + +   
Sbjct: 72  LLHEELRQLDSIVISKADEHAV------------PAGGALAVDRGKFGEDLTQTLANHPL 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D+ +GEV                   ++  ++  LT+      +     L+        
Sbjct: 120 IDLRRGEVKEIP-------------GGIVVLASGPLTSPQLSADIQQFTGLEYLNFFDAA 166

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L         +++Q+            ++   +
Sbjct: 167 SPIIVGDSINRDIAFMASRYDKGEAAYL-----NCPMSKQQYL--EFREALCQAEQTELK 219

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             E    R   +     +  I+  A    D   YGP     + D   R GERN   + L 
Sbjct: 220 DFE----RETAKFFEACL-PIEEMAQRGEDTMRYGPLKPVGLTDG--RTGERNYAVVQLR 272

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-FPTL 355
            E     +    G  T L    Q +  R IPGLE    IR G      ++N  +L  PTL
Sbjct: 273 QEDKAGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFIRLGVMHRNTFLNAPQLILPTL 332

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  A+A G +AG N+AR +   + +    T + +G + + +
Sbjct: 333 QFKQRHTLLAAGQLIGTEGYTAASAGGWLAGTNAARIALGREPLTLPNT-TMMGSLFEFI 391

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFL 474
           +                     +P   +  + P +G+K+    E+  +   + + + +  
Sbjct: 392 SGAVPKH--------------FQPMPPNFGIVPDLGVKIKSKPEKYGRYRDRSLADLDEW 437

Query: 475 RS 476
           +S
Sbjct: 438 KS 439


>gi|257867808|ref|ZP_05647461.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC30]
 gi|257874135|ref|ZP_05653788.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC10]
 gi|257876700|ref|ZP_05656353.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC20]
 gi|257801891|gb|EEV30794.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC30]
 gi|257808299|gb|EEV37121.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC10]
 gi|257810866|gb|EEV39686.1| tRNA (uracil-5-)-methyltransferase Gid [Enterococcus casseliflavus
           EC20]
          Length = 433

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 166/487 (34%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           ++ VIG G AG EAA  AA+ G +  L           H T+    + C  ++ G     
Sbjct: 3   EINVIGAGLAGSEAAWQAAQAGVAVNLYEMRPKKSTEAHHTNNFAELVCTNSLRGNNLTN 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  LD ++   AD   +              G     DR+ +   + + +  
Sbjct: 63  AVGVLKEEMRRLDSVIITSADKTAV------------PAGGALAVDRDDFSELVTKRVKE 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + VI+ E+        +I             +T  LT+    + +      +     
Sbjct: 111 HPLVTVIEEEITEIPEGITVI-------------ATGPLTSEPLSKAIQAFNGSEGFYFY 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P        M   +   R   G  A L+                    ++F    +
Sbjct: 158 DAAAPIVDKSTINMDKVYLKSRYDKGEAAYLNCPM------------NEEEFYAFREALV 205

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                   +     E        I+  A        +GP     +ED   + G+R    I
Sbjct: 206 NAEVAP--LKEFEKEKFFEGCMPIEVMAGRGPKTMLFGPMKPVGLEDP--KTGKRPYAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE+   +R G      ++N P+ L 
Sbjct: 262 QLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEEAEFVRYGVMHRNSFMNSPELLQ 321

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            T ++KK   LF AGQ+ G  GY E+AA GL+AGIN+A+ +     I   +  + IG M 
Sbjct: 322 QTYQSKKREDLFFAGQMTGVEGYVESAASGLMAGINAAKLAKGEAPIIMPQETT-IGSMA 380

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P NA+  L P +  ++     R +    + +   
Sbjct: 381 YYITHAE--------------GKHFQPMNANFGLLPELPERIRDKKSRYEALANRALAAL 426

Query: 472 NFLRSLL 478
              +  L
Sbjct: 427 EKAKEQL 433


>gi|55981411|ref|YP_144708.1| tRNA (uracil-5-)-methyltransferase Gid [Thermus thermophilus HB8]
 gi|81821827|sp|Q5SID2|TRMFO_THET8 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|237823899|pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
 gi|237823900|pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Tetrahydrofolate
 gi|55772824|dbj|BAD71265.1| glucose inhibited division protein [Thermus thermophilus HB8]
          Length = 443

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 107/495 (21%), Positives = 172/495 (34%), Gaps = 71/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA    +LG    L   +               + C+ ++GG G    
Sbjct: 4   VNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+     L+   AD A +              G     DRE +   +   +   
Sbjct: 64  KGLLQAEMRRAGSLVMEAADLARV------------PAGGALAVDREEFSGYITERLTGH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             L+V++ EV             V+            LT+      +         A   
Sbjct: 112 PLLEVVREEVREIPPGIT-----VLATG--------PLTSEALAEALKRRFGDHFLAYYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F  GR             +    TE+++       F      + 
Sbjct: 159 AASPIVLYESIDLTKCFRAGRYGQ------SADYLNCPMTEEEY-----RRF---HQALL 204

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q         LE     +  ++  A        +GP     + D   R G+     + 
Sbjct: 205 EAQRHTPHDWEKLEFFEACV-PVEELARRGYQTLLFGPMKPVGLVDP--RTGKEPFAVVQ 261

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  
Sbjct: 262 LRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGE 321

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLE ++  GL+ AG + G  GY E+AA G +AG+N+ARK+  L  +     +S +G ++ 
Sbjct: 322 TLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAPPE-ESMLGGLVR 380

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L            T+  E     +P  A+  L P         E+RQ  + + ++ ++ 
Sbjct: 381 YL-----------ATANPEG---FQPMYANWGLVPPVEGRMGKKEKRQAMYRRGLEAFSA 426

Query: 474 LRSLLKSLVLTSKNL 488
             S L   +   +  
Sbjct: 427 WLSGLNPPLPRPEAA 441


>gi|33865433|ref|NP_896992.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. WH 8102]
 gi|81574825|sp|Q7U7T2|TRMFO_SYNPX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33632602|emb|CAE07414.1| probable glucose inhibited division protein [Synechococcus sp. WH
           8102]
          Length = 461

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 162/493 (32%), Gaps = 73/493 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AG EAA   A+ G    ++          H +S    + C+ + G       
Sbjct: 12  VTVLGAGLAGTEAAWQVARAGIPVTIVEMRPMRRSPAHHSSDFAELVCSNSFGALSSDRA 71

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   ADA  +              G     DR  Y  A+   +   
Sbjct: 72  AGLLQEEMRRLGSLVIETADAHAV------------PAGGALAVDRGRYSAALTEALDQH 119

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + E      +  I    V+            LT+      +             
Sbjct: 120 PLVTIERREQQALPGDDQIT---VLATG--------PLTSEPLAEDLRAFTGRSDCHFFD 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F   R   G     D   I     ++Q+        +F    +T
Sbjct: 169 AASPIVHGDSIDLNVAFRASRYDKG-----DADYINCPMDKEQY-------LAFREALLT 216

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E      N  T       I+  A    D   YGP     + D          VR  
Sbjct: 217 AEQAELKDFDKNDATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 276

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + ++ IPGL +   +R G      ++
Sbjct: 277 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLAEAEFVRFGVMHRNTFL 336

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ +  S L  AGQI GT GY  A A G +AG N+AR +  L  I    T 
Sbjct: 337 ESPQLLEPTLQFRSRSSLLAAGQITGTEGYAAAVAGGWLAGTNAARLARGLAPIDLPAT- 395

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRF 464
              G +   ++                     +P   +  L P +  ++     R     
Sbjct: 396 CMSGALTHFVSEAPT--------------AKFQPMPPNFGLLPELPERIRDKRARYGAYR 441

Query: 465 AKYIQEYNFLRSL 477
            + +++   +++L
Sbjct: 442 DRALRDLERIKAL 454


>gi|312114355|ref|YP_004011951.1| gid protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219484|gb|ADP70852.1| gid protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 469

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 153/456 (33%), Gaps = 59/456 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA+ GA   L   +               L   +  R    E +A+
Sbjct: 9   IVGAGLAGSEAAWQAAERGARVVLHEMRPERQTQAHKTGGFAELVCSNSFRSDDFETNAV 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A  +        K PA  G     DR+ +   +   + +  N+++  GEV 
Sbjct: 69  GLLHEEMRRAGSLIMDAAARHKLPA--GGALAVDRDAFSAEVTERLRAHPNVEIASGEVD 126

Query: 126 GFNTEKNIISSIVM-QDNSMIRCSTVVLTTG----TFLRGVI-------HIGKLKIPAGR 173
                    + I      S    ++++  TG    +F   +            +     R
Sbjct: 127 ALPPAGWGPTIIATGPLTSPALSASIIAATGEDALSFFDAIAPIVLFDSIDMDVAWMQSR 186

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
                       ++    D  + +    A L  +   + + EK    E  +P   M ++ 
Sbjct: 187 YDKPGPGGTGKDYINCPLDRDQYEALIDALLAAEKTSFKEWEKTPYFEGCLPIEVMAER- 245

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                                           D   +GP     + D   R G++    +
Sbjct: 246 ------------------------------GRDTLRFGPMKPVGLMDA--RTGKQPWAVV 273

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLE     R G      ++N PK L 
Sbjct: 274 QLRQDNALGTLWNMVGFQTKLKHGEQSRVFRMIPGLENAVFARLGGLHRNTFLNSPKVLD 333

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K    +  AGQ+ G  GY E+AA GL+AG  +A +    D +   +T + +G ++
Sbjct: 334 GALRLKAAPHVRFAGQVTGVEGYVESAAIGLLAGRFAAAELVGRDPLPPPQTTA-LGALL 392

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             +T   + +      +      S +P N +  L P
Sbjct: 393 THITGGHLSD------TIESGAKSFQPMNVNFGLFP 422


>gi|282901981|ref|ZP_06309879.1| Gid protein [Cylindrospermopsis raciborskii CS-505]
 gi|281193068|gb|EFA68067.1| Gid protein [Cylindrospermopsis raciborskii CS-505]
          Length = 452

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 172/482 (35%), Gaps = 69/482 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +      G
Sbjct: 12  VIGGGLAGTEAAWQIAQAGVPVILHEMRPQRFSPAHHTENLAELVCSNSFGAMASDRAAG 71

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  LD ++   AD   +              G     DR  +   + + + +   
Sbjct: 72  LLHEELRQLDSIVISKADEHAV------------PAGGALAVDRGKFGEDLTQTLANHPL 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D+ +GEV            +V+            LT+      +     L+        
Sbjct: 120 IDLRRGEVKEVPAGI-----VVLASG--------PLTSPQLSADIQQFTGLEYLNFFDAA 166

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L         +++Q+            ++   +
Sbjct: 167 SPIIVGDSINRDIAFMASRYDKGEAAYL-----NCPMSKQQYL--EFREALCQAEQTELK 219

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             E    R   +     +  I+  A    D   YGP     + D+  R GERN   + L 
Sbjct: 220 DFE----RETAKFFEACL-PIEEMAQRGEDTMRYGPLKPVGLTDE--RTGERNYAVVQLR 272

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-FPTL 355
            E     +    G  T L    Q +  R IPGLE    +R G      ++N  +L  PTL
Sbjct: 273 QEDKAGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVRLGVMHRNTFLNAPQLVLPTL 332

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  A+A G +AG N+AR +   + +    T + +G + + +
Sbjct: 333 QFKQRHTLLAAGQLIGTEGYTAASAGGWLAGTNAARIALGKEPLTLPNT-TMMGSLFEFI 391

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFL 474
           +                     +P   +  + P +G+K+    E+  +   + + + +  
Sbjct: 392 SGAAPKH--------------FQPMPPNFGIVPDLGVKIKSKPEKYGRYRDRSLADLDEW 437

Query: 475 RS 476
           +S
Sbjct: 438 KS 439


>gi|116512035|ref|YP_809251.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123125575|sp|Q02YZ3|TRMFO_LACLS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116107689|gb|ABJ72829.1| tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing
           enzyme [Lactococcus lactis subsp. cremoris SK11]
          Length = 448

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 160/467 (34%), Gaps = 61/467 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    +           HKT     + C+ ++ G      
Sbjct: 6   INVIGAGLAGSEAAYQIAKRGIPVKIYEMRGLKQTPQHKTEKFAELVCSNSLRGAAITNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ + A+                  G     DRE +   + RE+ + 
Sbjct: 66  VGLLKEEMRRLDSVIIKAAEYT------------QVPAGGALAVDREGFSDFVTREVSNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI+ E+     ++  I             +T  LT+ +    +             
Sbjct: 114 PLVEVIREEITDIPQDELTII------------ATGPLTSDSLANKIREFNGADGFYFYD 161

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +      +   R   G    ++       K E Q   E LI      ++  
Sbjct: 162 AAAPIIDANSINFDKVYKKSRYDKGEADYINCPM---TKEEFQAFQEALI----SAEEAP 214

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER------ 288
               E                     A        +GP     +E      G R      
Sbjct: 215 LNSFEDLKVFEGCMPIE-------EMAKRGYKTMLFGPMKPVGLEYPYEYKGPRDGEFRT 267

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +  +  +    G  T L    Q +  + IPGLE    +R G      Y++ 
Sbjct: 268 PYAVVQLRQDNASASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDS 327

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L  T +++K   LF AGQ+ G  GY E+AA GLVAGIN+A+  N  + + F +T + 
Sbjct: 328 PNLLKQTFQSRKQENLFFAGQMTGVEGYVESAASGLVAGINAAKLFNDEEVVIFPKTTA- 386

Query: 408 IGVMIDDLTSKG--VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           IG +   +T       +P  +     E     R  +   R T +  +
Sbjct: 387 IGSLPYYITHTDSKHFQPMNVTFGIVEELDGPRIRDKKERYTKVAER 433


>gi|72382474|ref|YP_291829.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. NATL2A]
 gi|123621049|sp|Q46K52|TRMFO_PROMT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|72002324|gb|AAZ58126.1| Gid protein [Prochlorococcus marinus str. NATL2A]
          Length = 467

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 111/511 (21%), Positives = 173/511 (33%), Gaps = 71/511 (13%)

Query: 4   RSY-DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG- 52
           + Y  V VIG G AG EAA   A  G    L           H TS    + C+ + G  
Sbjct: 2   KEYPSVTVIGAGLAGSEAAWQIASAGIKVTLFEMRPKKKSLAHHTSEFAELVCSNSFGAL 61

Query: 53  ---LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L  E+  L  ++   AD                  G     DR  + L++  
Sbjct: 62  SSDRAAGLLQEELRTLQSIVINNADKY------------SVPAGGALAVDRSQFSLSITN 109

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           E+ S   + +I+ E         I         S +    +   TG       H      
Sbjct: 110 EVSSHPLITIIRDECPCLPKAHQITILATGPLTSELLAKDIKEFTGEK---ECHFFD--- 163

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  +    S     +F    +D G          D   +     E  +         F 
Sbjct: 164 AASPIITGESIDFLTAFRASRYDKG----------DADYVNCPMNEDSY-------IKFH 206

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-- 287
           ++ I   Q E                 I+  A    +   YGP     I D   R+G+  
Sbjct: 207 SELIKAEQAELKDFEKESANFFEGCLPIEQLAKRGIETMRYGPLKPIGIWDP--RWGDVN 264

Query: 288 --------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
                   R    + L  E     +    G  T L    Q +  R IPGL K   IR G 
Sbjct: 265 DKSIRRLKRAHAVVQLRQEDKAGKLWNLVGFQTNLKWGEQKRIFRMIPGLSKAEFIRFGV 324

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                +I  PK + PTL+      LF AGQ+ GT GY  A A G +AG N+A  +  LD 
Sbjct: 325 MHRNTFIESPKLIEPTLQFTNRKTLFAAGQLTGTEGYAAAVAGGWLAGTNAALLAKGLDT 384

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIG 457
           I    + + IG + + +++          + R + + + +P  A+   L  + +++    
Sbjct: 385 ITLPSS-TMIGALTNFVSNSQ-------ASLRVKNKKNFQPMPANFGILPELDIRVHNKR 436

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           ER ++   + +++   LR  L     +  N+
Sbjct: 437 ERYKEYRDRALRQIKKLRETLLDKSSSPTNI 467


>gi|241204428|ref|YP_002975524.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858318|gb|ACS55985.1| gid protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 152/491 (30%), Gaps = 78/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + V+GGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 10  IHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+     L+   AD                  G     DR+ +  A+ + +  
Sbjct: 70  AVGVIHAEMRMAGSLIMAAADRC------------QVPAGGALAVDRDGFSEAVTKAVHD 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI---------- 162
              + V++ E+ G       ++ +      +    S +   TG                 
Sbjct: 118 HPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQTETGEDSLAFFDAIAPIVYRE 177

Query: 163 -HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++    D  +      A + G T+ + + E     +
Sbjct: 178 SIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALISGDTVGFKEWEGTPYFD 237

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 238 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 266

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q    R IPGLE     R G   
Sbjct: 267 HNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLENAEFARLGGLH 325

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I 
Sbjct: 326 RNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLLAGRFAAAERKG-EAIS 384

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
                + +G ++  +T   ++      T     + S +P N +  L P       +    
Sbjct: 385 LPPATTALGSLLGHITGGHLV------TDEEPGKRSFQPMNINFGLFPELQPGSIVKPEG 438

Query: 461 QKRFAKYIQEY 471
            KRF    +  
Sbjct: 439 VKRFRGKDKTI 449


>gi|300022799|ref|YP_003755410.1| gid protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524620|gb|ADJ23089.1| gid protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 477

 Score =  252 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 101/495 (20%), Positives = 171/495 (34%), Gaps = 42/495 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + V+G G AG EAA   A+ G    L   +               L   +  R    E +
Sbjct: 7   IHVVGAGLAGSEAAHQIARAGIPVVLHEMRPERGTDAHKTDGFAELVCSNSFRSDDWENN 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +     +  K PA  G     DR+ +   +   +     + +++GE
Sbjct: 67  AVGLLHEEMRRADSLILAAGDKHKLPA--GGALAVDRDAFSAEVTARLSENPLVTIVRGE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G   +    +S+++            LT+      +  +      A     +P     
Sbjct: 125 IDGLPPDDW--ASVIIATG--------PLTSPALSTAIAKLTGEDSLAFFDAIAPVIHRD 174

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +      +   R     P       +    T+ ++  E  I      +K + +  E    
Sbjct: 175 SIDTSIAWFQSRYDKAGPGGTGADYLNCPMTKPEY--EAFIDALLAGEKTSFKDWEASTP 232

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          ++  A    D   YGP     ++D   R G      + L  +     
Sbjct: 233 YFD------GCLPVEVMAERGRDTLRYGPMKPVGLDDP--RTGRWPYAVVQLRQDNALAT 284

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGL+     R G      Y+N PK L  +L  K  S 
Sbjct: 285 LWNMVGFQTKLKHAEQVRVFRTIPGLQNAEFARLGGLHRNTYLNSPKLLDRSLRLKANSR 344

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +A ++   +      T + +G ++D +T   ++ 
Sbjct: 345 LRFAGQITGVEGYVESAAMGLLAGRFAAAQALGRETDAPPATTA-LGALLDHITGGHLVS 403

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMK--------LGCIGER--RQKRFAKYIQEYN 472
                  R+  R S +P N +  L P   +            G    R+K+ A   +   
Sbjct: 404 ---DDDERSSAR-SFQPMNINYGLLPDLAQAPTHDQNGARLKGPERGREKKRAMSRRAIA 459

Query: 473 FLRSLLKSLVLTSKN 487
            L   L      S +
Sbjct: 460 DLTRWLDETAAQSAD 474


>gi|46199379|ref|YP_005046.1| tRNA (uracil-5-)-methyltransferase Gid [Thermus thermophilus HB27]
 gi|81405714|sp|Q72IQ5|TRMFO_THET2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46197004|gb|AAS81419.1| glucose inhibited division protein A [Thermus thermophilus HB27]
          Length = 443

 Score =  252 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 106/495 (21%), Positives = 172/495 (34%), Gaps = 71/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA    +LG    L   +               + C+ ++GG G    
Sbjct: 4   VNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+     L+   AD A +              G     DRE +   +   +   
Sbjct: 64  KGLLQAEMRRAGSLVMEAADLARV------------PAGGALAVDREEFSGYITERLRGH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             L+V++ EV             V+            LT+      +         A   
Sbjct: 112 PLLEVVREEVREIPPGIT-----VLATG--------PLTSEALAEALKRRFGDHFLAYYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F  GR             +    TE+++       F      + 
Sbjct: 159 AASPIVLYESIDLTKCFRAGRYGQ------SADYLNCPMTEEEY-----RRF---HQALL 204

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q         LE     +  ++  A        +GP     + D   R G+     + 
Sbjct: 205 EAQRHTPHDWEKLEFFEACV-PVEELARRGYQTLLFGPMKPVGLVDP--RTGKEPFAVVQ 261

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  
Sbjct: 262 LRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGE 321

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLE ++  GL+ AG + G  GY E+AA G +AG+N+AR++  L  +     +S +G ++ 
Sbjct: 322 TLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARRALGLPPVAPPE-ESMLGGLVR 380

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L            T+  E     +P  A+  L P         E+RQ  + + ++ ++ 
Sbjct: 381 YL-----------ATANPEG---FQPMYANWGLVPPVEGRMGKKEKRQAMYRRGLEAFSA 426

Query: 474 LRSLLKSLVLTSKNL 488
             S L   +   +  
Sbjct: 427 WLSGLNPPLPRPEAA 441


>gi|260459806|ref|ZP_05808060.1| gid protein [Mesorhizobium opportunistum WSM2075]
 gi|259034608|gb|EEW35865.1| gid protein [Mesorhizobium opportunistum WSM2075]
          Length = 469

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/495 (19%), Positives = 166/495 (33%), Gaps = 65/495 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + +IGGG AG EAA  AA+ G    L   +            +  L   +  R    E +
Sbjct: 6   IHIIGGGLAGSEAAWQAAQAGVPVILHEMRPVRGTDAHKTDGLAELVCSNSFRSDDAENN 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +     +  + PA  G     DR+ +  A+ +++ +   + + + E
Sbjct: 66  AVGLLHAEMRLAGSLIMGAGDANQVPA--GGALAVDRDGFSDAVTKKLEAHPLITIQREE 123

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG-------VIHI----GKLKIPA 171
           + G        + I      +     ++   TG            +IH       +    
Sbjct: 124 MPGLPPADWDQAIIATGPLTAPSLAQSIAEVTGADALAFFDAIAPIIHFDTIDMDICWFQ 183

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R            ++    D  +      A +DG+   + + E     +  +P   M +
Sbjct: 184 SRYDKVGPGGTGKDYINCPMDKDQYLAFVQALVDGQKTEFKQWEGTPYFDGCLPIEIMAE 243

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +                                 +   YGP     + +       +   
Sbjct: 244 R-------------------------------GVETLRYGPMKPMGLTNAHNPTV-KAYA 271

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  RTIPGLE  +  R G      YIN P  
Sbjct: 272 VVQLRQDNALGTLYNMVGFQTKLKHAEQVRVFRTIPGLENADFARLGGLHRNTYINSPTL 331

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  +L+ K   GL  AGQI G  GY E+AA GL+AG  +A +           T ++ G 
Sbjct: 332 LDASLQLKSRPGLRFAGQITGCEGYVESAAIGLLAGRFAAAERLGHATSLPPLTTAF-GA 390

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKR 463
           +++ +T   ++      +     + S +P N +  L P        G +L    +   KR
Sbjct: 391 LLNHITGGHIV------SEDEPGKRSFQPMNVNFGLFPPVEAAKIEGQRLRGKDKTVAKR 444

Query: 464 FAKYIQEYNFLRSLL 478
            A   +     R  L
Sbjct: 445 HAITSRALGDCRQWL 459


>gi|260435485|ref|ZP_05789455.1| tRNA:M(5)U-54 methyltransferase [Synechococcus sp. WH 8109]
 gi|260413359|gb|EEX06655.1| tRNA:M(5)U-54 methyltransferase [Synechococcus sp. WH 8109]
          Length = 456

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/499 (21%), Positives = 169/499 (33%), Gaps = 73/499 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +++S  V V+G G AG EAA   A+ G +  L+          H +S    + C+ + G 
Sbjct: 1   MSQSPHVTVLGAGLAGTEAAWQIARAGVAVTLVEMRPIRRSPAHHSSDFAELVCSNSFGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  L+   AD              PA  G     DR  Y  A+ 
Sbjct: 61  LSSDRAAGLLQEELRRLGSLVIGTAD----------THAVPA--GGALAVDRGRYSAALT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +     + + + E      E      ++         +T  LT+ +    +       
Sbjct: 109 EALDQHPLVTIERREQQALPPEH-----VITVL------ATGPLTSESLAEDLRQFTGRA 157

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   SP     +  +   F   R   G     D   I     ++Q+        +F
Sbjct: 158 DCHFFDAASPIVHGDSIDLSVAFLASRYDKG-----DADYINCPMDKEQY-------LAF 205

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK------- 281
               +   Q E      N  T       I+  A    D   YGP     + D        
Sbjct: 206 RQALLEAEQAELKDFDKNDATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVND 265

Query: 282 -IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             VR  +R    + L  E  +  +    G  T L    Q + ++ IPGL +   +R G  
Sbjct: 266 RDVRRAKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLGQAEFVRFGVM 325

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++  P+ L PTL+  +   L  AGQI GT GY  A A G +AG N+AR +  L+ I
Sbjct: 326 HRNTFLESPQLLQPTLQFLQRPNLLAAGQITGTEGYAAAVAGGWLAGTNAARLALGLEPI 385

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGE 458
               T S  G +   ++                     +P   +  L P +  ++     
Sbjct: 386 DLPAT-SMSGALTHFVSEAPT--------------AKFQPMPPNFGLLPELPERIRDKRA 430

Query: 459 RRQKRFAKYIQEYNFLRSL 477
           R      + +Q+   +R+L
Sbjct: 431 RYGAYRDRALQDLEPMRAL 449


>gi|22297993|ref|NP_681240.1| tRNA (uracil-5-)-methyltransferase Gid [Thermosynechococcus
           elongatus BP-1]
 gi|26006759|sp|P59109|TRMFO_THEEB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|22294171|dbj|BAC08002.1| glucose inhibited division protein [Thermosynechococcus elongatus
           BP-1]
          Length = 457

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/443 (22%), Positives = 150/443 (33%), Gaps = 56/443 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK--- 55
           + VIGGG AG EAA   A+ G    L           H T+ +  + C+ + G       
Sbjct: 4   ITVIGGGLAGTEAAWQIARAGLPVVLYEMRPQVASPAHHTAELAELVCSNSFGAKASDRA 63

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ AL  L+   AD                  G     DR  +   +   + + 
Sbjct: 64  TGLLHHELRALGSLIIATADRH------------QVPAGGALAVDRAHFSRELTETLENH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + E+            +V+            LT+      +     L   +   
Sbjct: 112 PLVTVRREELPHLPESGI----VVLATG--------PLTSEALSADLQCFTGLDYLSFFD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +   +  F   R   G  A L+     +   E Q    R         +  
Sbjct: 160 AASPIVVGESINREVAFLASRYDRGEAAYLNCP---FSAEEYQ----RFWQALCEAKQAP 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E    R N +     +  ++  A    D   +GP     + D   R GER      
Sbjct: 213 LKDFE----RENAQFFEACL-PVEELARRGVDTLRFGPLKPVGLRDP--RTGERPYAVAQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E  +  +    G  T L    Q +  R IPGLE+   +R G      ++N PK L  
Sbjct: 266 LRQEDRHGQLWNLVGFQTNLRWGEQQRVFRMIPGLEQAEFVRMGVMHRNTFLNAPKLLKA 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +L+ +    L  AGQI GT GY  AAA G +AG N+AR +  L  +    T +  G +  
Sbjct: 326 SLQFRDRPTLLAAGQITGTEGYTAAAAGGWLAGTNAARLARGLAPLVLPPT-TMAGALFH 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRIS 436
            ++     E          + I 
Sbjct: 385 YIS---TAESKTFQPMPPNFGIL 404


>gi|163759435|ref|ZP_02166520.1| glucose-inhibited division protein A [Hoeflea phototrophica DFL-43]
 gi|162283032|gb|EDQ33318.1| glucose-inhibited division protein A [Hoeflea phototrophica DFL-43]
          Length = 478

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/500 (19%), Positives = 167/500 (33%), Gaps = 71/500 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + VIGGG AG EAA   A+ G    L   +           ++  L   +  R  DA + 
Sbjct: 11  IHVIGGGLAGSEAAWQIARRGLPVVLHEMRPVRGTDAHKTDSLAELVCSNSFRSDDAENN 70

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +  A  +  +  +  + PA  G     DRE +  A+   I ++  + + + E
Sbjct: 71  AVGVIHAEMRMAGSLIMKCADANQVPA--GGALAVDREGFARAVTDAIEAEPLITIAREE 128

Query: 124 VAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTGTF--LRGVIHIGKLKIPAG--- 172
           V+G    +   + I             IR  T       F  +  +IH   + +      
Sbjct: 129 VSGLPPAEWDQTIIATGPLTAPDLAEAIRAETGKDALAFFDAIAPIIHTDSIDMSVCWFQ 188

Query: 173 -RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R            ++    D  +      A + G    + + E     +  +P   M +
Sbjct: 189 SRYDKVGPGGTGKDYINCPMDKDQYDAFIDALIAGDVTGFKEWEGTPYFDGCLPIEIMAE 248

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNG 290
           +                                 +   +GP     + +      + +  
Sbjct: 249 R-------------------------------GRETLRHGPMKPMGLTNA--HQPDIKPY 275

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             + L  +     +    G  T L    Q + IR IPGLE     R G      Y+N P 
Sbjct: 276 AVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIIRMIPGLENAEFARLGGLHRNTYLNSPL 335

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  +L+ +   GL  AGQI G  GY E+AA GL+AG  +A + N  + +      +  G
Sbjct: 336 LLDGSLQLRSRPGLRFAGQITGCEGYVESAAMGLLAGRFAAAERNG-ELLAPPPPTTAFG 394

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-----------GMKLGCIGE 458
            +++ +T   +       +     + S +P N +  L P            G +     +
Sbjct: 395 ALLNHITGGHI------LSDDEPGKRSFQPMNVNFGLFPPLDPGAIVRPEGGGRFRGKDK 448

Query: 459 RRQKRFAKYIQEYNFLRSLL 478
            R K+ A   +      + L
Sbjct: 449 ARAKKQALARRALTDFGTWL 468


>gi|288958303|ref|YP_003448644.1| glucose inhibited division protein Gid [Azospirillum sp. B510]
 gi|288910611|dbj|BAI72100.1| glucose inhibited division protein Gid [Azospirillum sp. B510]
          Length = 447

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 153/476 (32%), Gaps = 86/476 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M +    V VIGGG AG EAA   A  G    L           H T  +  + C+ +  
Sbjct: 1   MTDTLRPVHVIGGGLAGSEAAWQLASRGIPVVLHEMRPVRKTEAHSTEKLAELVCSNSFR 60

Query: 52  G-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
                    G L  E+     L+ R ADA           K PA  G     DR+ +  +
Sbjct: 61  SDDAEYNAVGLLHEEMRRCGSLILRCADA----------HKVPA--GGALAMDRDGFADS 108

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI--- 162
           +   + +   + + +GEVAG   E+     +      S      V   TG          
Sbjct: 109 VTEAVSTHPLITIERGEVAGLPPEEWDSVIVATGPLTSPALAEAVRSQTGEDSLAFFDAI 168

Query: 163 --------HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
                             R            ++   F+    +    A ++G+ I + + 
Sbjct: 169 APIVYLESIDLSKAWFQSRYDKPGPGGTGKDYINCAFEKDEYRAFIAALIEGEKIDFKEW 228

Query: 215 EK-QFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
           EK     E  +P   M ++                                 D   YGP 
Sbjct: 229 EKNTPYFEGCLPIEVMAER-------------------------------GVDTLRYGPM 257

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               + +   +   R    + L  +     +    G  T L    Q +  R IPGLE   
Sbjct: 258 KPVGLTNP-HKPERRPYAVVQLRQDNALGTLYNLVGFQTKLRHAEQARIFRMIPGLENAE 316

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
             R G      ++N P+ L   L  K +  L  AGQ+ G  GY E+AA GL+AG  +A +
Sbjct: 317 FARLGGMHRNTFLNSPRILDGALRLKSLPRLRFAGQVTGCEGYVESAAVGLLAGRFAAAE 376

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
               + I      + +G ++  +T     E Y             +P N +  L P
Sbjct: 377 RLGQE-ISTPPMTTALGAILGHITGGAEAETY-------------QPMNVNFGLFP 418


>gi|325293053|ref|YP_004278917.1| tRNA uracil-5-methyltransferase Gid [Agrobacterium sp. H13-3]
 gi|325060906|gb|ADY64597.1| tRNA uracil-5-methyltransferase Gid [Agrobacterium sp. H13-3]
          Length = 485

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 161/488 (32%), Gaps = 57/488 (11%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI 50
           M +++Y  I V+GGG AG EAA   A+ G    L           HK  T+  + C+ + 
Sbjct: 5   MQDKTYSPIHVVGGGLAGSEAAWQIAESGVPVILHEMRGVRGTEAHKGDTLAELVCSNSF 64

Query: 51  GG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                     G +  E+     L+   AD                  G     DR+ +  
Sbjct: 65  RSDDATANAVGVIHAEMRLAGSLIMACADRH------------QVPAGGALAVDRDGFSQ 112

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A+   + S   + +++ EV+G   ++           S I   T  LT+      V    
Sbjct: 113 AVTDRLESHPLVTILREEVSGLPPKEW---------GSSIIA-TGPLTSPDLAAAVQAET 162

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A     +P     +  M   +   R     P       I     E+Q+     I 
Sbjct: 163 GEDALAFFDAIAPIVHRDSINMDICWYQSRYDKVGPGGTGKDYINCPMNEEQY--NAFID 220

Query: 226 FSFMTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                D +  ++           T        I+  A        +GP     + +    
Sbjct: 221 ALIAGDTVGLKEW--------EGTPYFDGCLPIEIMAERGRQTLRHGPMKPMGLTNAHNP 272

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
              +    + L  +     +    G  T L    Q    R IPGL+     R G      
Sbjct: 273 TV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADVFRMIPGLQNAEFARLGGLHRNT 331

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YI+ P  L P+L+ K    L  AGQI G  GY E+A+ GL+AG  +A +           
Sbjct: 332 YIDSPVLLDPSLKLKSRPDLRFAGQITGCEGYVESASVGLLAGRFAAAERKGETPSLPPA 391

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
           T + +G +++ +T   +       ++    + S +P N +  L P       +     KR
Sbjct: 392 TTA-LGSLLNHITGGHLS------SNDEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKR 444

Query: 464 FAKYIQEY 471
           F    +  
Sbjct: 445 FRGKDKTI 452


>gi|33861672|ref|NP_893233.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|81572991|sp|Q7TU75|TRMFO_PROMP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33640040|emb|CAE19575.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 470

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/512 (23%), Positives = 184/512 (35%), Gaps = 76/512 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AGCEAA   A  G +  L+          H TS    + C+ + G
Sbjct: 1   MIDKQ--VIVIGAGLAGCEAAWQIANSGIAVKLVEMRPLNSTPAHHTSEFAELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+   + L+ + AD            K     G     DR  +  ++
Sbjct: 59  ALSADRAAGLLQEELRTFNSLIIQTAD------------KFSVPAGGALAVDRSKFSKSL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + + +   +++ + E      +KNI    V+            LT+      +     +
Sbjct: 107 TQTLSAHPFVEISRFEQLDLPNKKNIT---VLATG--------PLTSDELATKIKKFTGI 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP     +   +  F   R   G PA L+                +L  F+
Sbjct: 156 DSCHFFDAASPIIYGDSINHEIVFKASRYDKGDPAYLNCPI------------NKLDYFN 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
           F    I   Q                   I+  A    +   YGP             + 
Sbjct: 204 FRNALINGEQASLKDFDKESANFFEACLPIEEIARRGIETMRYGPLKSIGLWNPNWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRENRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +   + 
Sbjct: 324 MHRNTFLESPKLLLPTLQFLKRETLFAAGQITGTEGYAAAAAGGLLAGINASLLAKNKNL 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F   +S IG +++ ++                 R  +  +   N+  P+    G + E
Sbjct: 384 VTFPN-ESMIGSLMNFIS----------------NRNEIMSNQKKNKFQPMPASFGLVPE 426

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
              K   K ++   +    LK L +  K L +
Sbjct: 427 LTNKIKDKKLRYKAYQERSLKELQVFKKVLDA 458


>gi|313901011|ref|ZP_07834499.1| tRNA:m(5)U-54 methyltransferase [Clostridium sp. HGF2]
 gi|312953969|gb|EFR35649.1| tRNA:m(5)U-54 methyltransferase [Clostridium sp. HGF2]
          Length = 432

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 158/451 (35%), Gaps = 54/451 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+++   V V+G G AGCEAA    K      L+  +  T      +     L   + +R
Sbjct: 1   MMDK---VTVVGAGLAGCEAAWQLVKRKIPVRLVEMRPKTSSPAHHSENFAELVCSNSLR 57

Query: 61  EI---DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
                +A+  L   +     I        + PA  G     DR+ +   +  ++     +
Sbjct: 58  SDSLNNAVGILKEEMRHLDSIIMESAKATRVPA--GSALAVDRQAFSRRITEQLKQHPLI 115

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +V+Q EV        II+S  +  +++     +   T                A  + + 
Sbjct: 116 EVVQEEVTQIPDGPCIIASGPLTSDAL--SKAIQEYTHA------DYFHFYDAAAPIIEK 167

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            S     +++K      R   G  A ++          ++  D       F  + I    
Sbjct: 168 DSIDFSKAYIK-----SRYDKGEAAYINC------AMSREEFDA------FYEELIHAET 210

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            +  +     ET+       +  A        +GP     +E      G      + L  
Sbjct: 211 AQ--LHEFEDETYFEGCMPFEEMARRGRQTLLFGPMKPVGLERPD---GTTPYAVVQLRQ 265

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
           +     +    G  T L    Q + +  IPGLE V+I+R G      Y+  PK L PT +
Sbjct: 266 DNAVASLYNIVGFQTHLKWGEQKRLLSMIPGLENVSIVRYGVMHRNSYLCAPKVLRPTYQ 325

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
             +   LF AGQ+ G  GY E+AA GL+AG+N A    +   +    T   IG M   +T
Sbjct: 326 HVQRDDLFFAGQLCGVEGYVESAASGLLAGMNMANLMREKAVVELPNT-CVIGSMAHYIT 384

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
                E Y             +P NA+  + 
Sbjct: 385 --HASERY------------FQPMNANFGIM 401


>gi|125624095|ref|YP_001032578.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166989561|sp|A2RKQ0|TRMFO_LACLM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|124492903|emb|CAL97864.1| GidC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070868|gb|ADJ60268.1| tRNA (uracil-5-)-methyltransferase Gid [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 448

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 164/469 (34%), Gaps = 65/469 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT     + C+ ++ G      
Sbjct: 6   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGLKQTPQHKTDKFAELVCSNSLRGAAITNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++ + A+                  G     DRE +   + +E+ + 
Sbjct: 66  VGLLKEEMRRLDSVIIKAAEYT------------QVPAGGALAVDREGFSDFVTKEVSNH 113

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++VI+ E+     ++  I  +  +  DN   +        G +             A 
Sbjct: 114 PLVEVIREEITEIPQDELTIIATGPLTSDNLANKIREFNGADGFYFYD---------AAA 164

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + D+ S +    + K  +D G          +   I    T+++F  +         ++
Sbjct: 165 PIIDANSINFDKVYKKSRYDKG----------EADYINCPMTKEEF--QAFQEALISAEE 212

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER---- 288
                 E                     A        +GP     +E      G R    
Sbjct: 213 APLNSFEDLKVFEGCMPIE-------EMAKRGYKTMLFGPMKPVGLEYPDEYKGPRDGEF 265

Query: 289 --NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
                 + L  +  +  +    G  T L    Q +  + IPGLE    +R G      Y+
Sbjct: 266 RTPYAVVQLRQDNASASLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYM 325

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + P  L  T +++K   LF AGQ+ G  GY E+AA GLVAGIN+A+  N  + + F +  
Sbjct: 326 DSPNLLKQTFQSRKQENLFFAGQMTGVEGYVESAASGLVAGINAAKLFNDEEVVIFPK-I 384

Query: 406 SYIGVMIDDLTSKG--VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           + IG +   +T       +P  +     E     R  +   R T +  +
Sbjct: 385 TAIGSLPYYITHTDSKHFQPMNVTFGIVEELDGPRIRDKKERYTKVAER 433


>gi|49475384|ref|YP_033425.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella henselae str.
           Houston-1]
 gi|81170596|sp|Q6G3Y9|TRMFO_BARHE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|49238190|emb|CAF27400.1| Glucose inhibited division protein a [Bartonella henselae str.
           Houston-1]
          Length = 468

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/484 (19%), Positives = 169/484 (34%), Gaps = 40/484 (8%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M N+ S  + +IGGG AGCEA+   A+ G    L   +            +  L   +  
Sbjct: 1   MFNKLSTPIHIIGGGLAGCEASWQIAQSGIPVILHEMRPQKKSEAHKTGQLAELVCSNSF 60

Query: 60  REID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  D    A+  L   +  A  +  +  +  K PA  G     DR+ +   +   + +  
Sbjct: 61  RSDDSSTNAVGLLHTEMRLAKSLIMKAADANKVPA--GSALAVDRDGFSKTVTAALENHP 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + + + E+     E              I  +T  LT+    + +  I   +  +    
Sbjct: 119 LITIKREEIQEIP-ENW----------PHIIIATGPLTSPKLAKAIQTITGTEALSFFDA 167

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P       +     ++Q+  E  +      +K   
Sbjct: 168 IAPIIYTDSINMDICWYQSRYDKIGPEGTGKDYLNCPLNKEQY--EAFVQALKNAEKTEF 225

Query: 236 RQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           R           +T        I+  A    +   +GP     + +       +    + 
Sbjct: 226 RDF--------EKTPYFDGCLPIEVMAERGLETLRHGPMKPMGLTNAHNPTV-KAYAVVQ 276

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE     R G      Y+N P  L  
Sbjct: 277 LRQDNKLGTLYNMVGFQTKLKYGEQVRIFRMIPGLENAEFARLGGLHRNTYLNSPIILDQ 336

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL  K+  GL  AGQI G  GY E++A GL+AG  +A + +  +C C     + +G +++
Sbjct: 337 TLRLKQRPGLRFAGQITGCEGYVESSAIGLLAGRFAAAEYH-YNCPCLPPLTTALGALLN 395

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T   +++           R S +P N +  L P  +       +R     K + +   
Sbjct: 396 HITGGHIVD-------EKTGRKSFQPMNINFGLFP-PIASASYSGKRLPSKEKKLAKKQA 447

Query: 474 LRSL 477
           + + 
Sbjct: 448 ITAR 451


>gi|148242640|ref|YP_001227797.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. RCC307]
 gi|205830343|sp|A5GU85|TRMFO_SYNR3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147850950|emb|CAK28444.1| Protein gid homolog [Synechococcus sp. RCC307]
          Length = 456

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/511 (21%), Positives = 172/511 (33%), Gaps = 78/511 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +V+VIG G AG EAA   A+ G    L+          H +S  G + C+ + G      
Sbjct: 2   NVLVIGAGLAGSEAAWQVAQAGLPVTLVEMRPLRRSPAHHSSEFGELVCSNSFGALSSDR 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  L+   AD   +              G     DR  Y  A+   + +
Sbjct: 62  AAGLLQEELRRLGSLVISTADHHAV------------PAGGALAVDRGRYSAALTEALDA 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E         I         S      +   TG   R   H       A  
Sbjct: 110 HPLVTIERREQQRLPEPGQITVLATGPLTSEPLAEDLRAFTG---REDCHFFD---AASP 163

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + +  S +L     +  F   R   G     D   I     ++Q+        +F    +
Sbjct: 164 IVEGESINL-----EVAFRASRYDKG-----DADYINCPMNQEQY-------LAFREALL 206

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI--------EDKIVRF 285
           T  Q E      +  T       I+  A    D   YGP     +         D+ VR 
Sbjct: 207 TAEQAELKDFEKDSATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDQRWGDVTDRDVRR 266

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +R    + L  E  +  +    G  T L    Q + ++ IPGLE  + +R G      +
Sbjct: 267 AKRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQLIPGLENASFVRFGVMHRNTF 326

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +  P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR +     I    T
Sbjct: 327 LEAPQLLQPTLQFRQRPSLLAAGQITGTEGYAAAVAGGWLAGTNAARIARGDAPIDLPAT 386

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            +  G +   ++                     +P   +  L P       + ER + + 
Sbjct: 387 -TMAGALTHFISEAPS--------------GKFQPMPPNFGLLPE------LPERIRDKR 425

Query: 465 AKYIQEYNFLRSLLKSLVLTSKNLSSTSISF 495
            +Y    +   + L       K   +T+ + 
Sbjct: 426 RRYGAYRDRALADLAPFSSAPKVAEATAAAL 456


>gi|86357464|ref|YP_469356.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli CFN 42]
 gi|123512154|sp|Q2K957|TRMFO_RHIEC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86281566|gb|ABC90629.1| glucose inhibited division protein A [Rhizobium etli CFN 42]
          Length = 477

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/491 (18%), Positives = 153/491 (31%), Gaps = 78/491 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + V+GGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 10  IHVVGGGLAGSEAAWQIASAGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+     L+   AD                  G     DR+ +  A+ R I  
Sbjct: 70  AVGVIHAEMRMAGSLIMAAADRH------------QVPAGGALAVDRDGFSDAVTRAIHD 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI---------- 162
              + V++ E+ G       ++ +      +    + +   TG                 
Sbjct: 118 HPLITVMREEITGLPPSDWDLAIVATGPLTAPSLAAAIQAETGEDSLAFFDAIAPIVYRE 177

Query: 163 -HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++    D  +      A + G T+ + + E     +
Sbjct: 178 SIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVNALIAGDTVGFKEWEGTPYFD 237

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 238 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 266

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q +  R IPGLE     R G   
Sbjct: 267 HNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLENAEFARLGGLH 325

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I 
Sbjct: 326 RNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKG-EAIS 384

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
                + +G ++  +T   ++      T     + S +P N +  L P       +    
Sbjct: 385 LPPATTALGSLLGHITGGHIV------TDEEPGKRSFQPMNINFGLFPELEPGSIVKPEG 438

Query: 461 QKRFAKYIQEY 471
            KRF    +  
Sbjct: 439 VKRFRGKDKTI 449


>gi|90419396|ref|ZP_01227306.1| gid protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336333|gb|EAS50074.1| gid protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 473

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 150/469 (31%), Gaps = 61/469 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           + V+GGG AG EAA   A+ G    L   +            +  L   +  R  D    
Sbjct: 6   IHVVGGGLAGSEAAWQIAERGLPVVLHEMRPVRGTEAHKTDHLAELVCSNSFRSDDSQTN 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +  R  +  + PA  G     DRE +  A+   I +   + V +GE
Sbjct: 66  AVGVLHAEMRLANSLIMRCADAHQVPA--GSALAVDREGFSGAVSEAIAAHPLITVERGE 123

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI-----------HIGKLKIPA 171
           V G   E+   S +      +     ++   TGT                          
Sbjct: 124 VEGLPPEEWGPSIVATGPLTAPSLAESISAATGTDALAFFDAIAPIVHFDSIDMDKAWFQ 183

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
            R            ++    D    +    A ++G    + + E     +  +P   M +
Sbjct: 184 SRYDKVGPGGTGKDYINCPLDKDTYERFVAALVEGDRAEFKEWEGTPYFDGCLPIEIMAE 243

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNG 290
           +                                 +   +GP     + +      + +  
Sbjct: 244 R-------------------------------GPETLRHGPMKPMGLTNA--HQPDIKAY 270

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             + L  +     +    G  T L    Q   +R IPGLE     R G      Y+N P 
Sbjct: 271 AVVQLRQDNALGTLYNIVGFQTKLKYGAQAAVLRMIPGLENAEFARLGGLHRNTYLNSPT 330

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L PTL  K    +  AGQI G  GY E+AA GL+ G  +A +          +T +  G
Sbjct: 331 LLDPTLRLKVRPHIRFAGQITGCEGYVESAAVGLMTGRFAAAERLGEAATPPPQTTAM-G 389

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
            +   +T   +             + S +P N +  L P  ++ G I +
Sbjct: 390 ALAAHITGGHLAH------QEESGKRSFQPMNINFGLFP-PLEPGAIQK 431


>gi|317131317|ref|YP_004090631.1| gid protein [Ethanoligenens harbinense YUAN-3]
 gi|315469296|gb|ADU25900.1| gid protein [Ethanoligenens harbinense YUAN-3]
          Length = 440

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 166/474 (35%), Gaps = 48/474 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           + V+G G AGCEAA  AA  GA   L+  K +       +     L   + +R     +A
Sbjct: 8   ITVVGAGLAGCEAAWQAANCGAQVTLVEMKPARFSPAHHSLDFAELVCSNSLRAEGLTNA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DR  +   +  ++ +   + V + E+
Sbjct: 68  VGLLKEEMRRLDSLILACADATRVPA--GGALAVDRAGFSRMVTEKLEAHPCITVERREL 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +       ++++  + D +M     VV   G      +H       A  +  + S     
Sbjct: 126 SDIPAGPCVVATGPLTDGAM--AEAVVRACG--GEAPLHFYD---AAAPIVTAESLDFDK 178

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            +    +  G              I    T++++        +F    +T    E     
Sbjct: 179 VYFAARYGKGG----------ADYINCPMTKEEYD-------AFYDALLTAEPAEVHGFE 221

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            +          ++  A    D   +GP     + D   R G      + L  +     +
Sbjct: 222 KSDPHVFEGCMPVEVMAARGRDTLRFGPLKPVGLPDP--RTGREPYAVVQLRHDDAAGGL 279

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    IPGLE+   +R G      ++N P  L      K    +
Sbjct: 280 YNLVGFQTHLRFPEQKRVFSMIPGLERAEFVRYGVMHRNTFLNAPGLLDRFYRLKSDPRV 339

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL AG+N AR++  L  +      + IG +   ++     + 
Sbjct: 340 FFAGQMTGVEGYLESAASGLDAGLNCARQTMGL-PLADFTEKTAIGALAHYISGADGKQ- 397

Query: 424 YRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                         +P N +  +  P+  ++     R +   A+ ++  + +R+
Sbjct: 398 -------------FQPMNVNFGIIAPLEKRVKAKRARYEAVSARALETLDTIRA 438


>gi|323697759|ref|ZP_08109671.1| gid protein [Desulfovibrio sp. ND132]
 gi|323457691|gb|EGB13556.1| gid protein [Desulfovibrio desulfuricans ND132]
          Length = 440

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 166/466 (35%), Gaps = 45/466 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V+++GGG AGC+ A   A+ G S  L   K            +  L   +  R      A
Sbjct: 4   VVIVGGGLAGCDCAWQLAEAGVSVTLFEMKPEKRSEAHTEDGLAELVCSNSFRATGPAAA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +        + PA  G     DR L+   +  +I   E + V++ E+
Sbjct: 64  IGLLKEEMERLGSLVMEAAFATRVPA--GGALAVDRNLFSDYITEKIEGHEAITVVRREI 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A  + E        +     +  +   L +      ++              +P  S  +
Sbjct: 122 ASLDDE-------ALAGADAVVIAAGPLASPDLTESLMAAVGDARLYFYDAIAPIVSRDS 174

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R K      L+       + E     +  +      +K+  R+ E     
Sbjct: 175 VDFDKAFWGSRWKPEDDDYLNCPM---SEAEY----KAFVAALLEGEKVKPREFE----- 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E H      ++  A       ++GP       D   R GER    + L  E  +   
Sbjct: 223 --KEVHFEACLPVEAMAERGEMTLAFGPLKPVGFTDP--RTGERPFAIVQLRTENADKTA 278

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE    +R G      Y+N P+ L  TL+ K   G 
Sbjct: 279 FNLVGFQTKLKYPEQKRIFRMIPGLENAEFLRLGSIHRNTYVNAPEVLDETLQLKNRPGT 338

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQI G  GY E+AA GL  G++  R+    + +     ++ +G +++ L +K   + 
Sbjct: 339 YLAGQITGVEGYLESAACGLWLGLSLGRRLRG-EAVIDPPVETALGALMNHLRTKPDKQ- 396

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
                         +P N +  L P G++     + R++ + +  Q
Sbjct: 397 -------------FQPSNVNFGLMP-GLEGRIKKKFRKEAYGQRAQ 428


>gi|254525767|ref|ZP_05137819.1| tRNA:m(5)U-54 methyltransferase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537191|gb|EEE39644.1| tRNA:m(5)U-54 methyltransferase [Prochlorococcus marinus str. MIT
           9202]
          Length = 470

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/510 (21%), Positives = 174/510 (34%), Gaps = 83/510 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDKK--VIVIGAGLAGSEAAWQVANAGVPVELVEMRPVKSTPAHHTGEFGELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L +E+     L+ + AD            K     G     DR  + +A+
Sbjct: 59  ALNPDRAAGLLQKELRIFKSLIIQTAD------------KFAVPAGGALAVDRSKFSIAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   +++ + E      ++ I    ++            LT+      +      
Sbjct: 107 TEALSSHPLIEIKRFEQLDLPRKEKIT---ILATG--------PLTSDELSYKIQAFTGK 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP  S  +   +  F   R   G PA L+               ++     
Sbjct: 156 DACHFFDAASPIISGDSIDQEIVFKASRYDKGDPAYLNCPM------------DKNDYMH 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
           F    I   Q                   I+  A    D   +GP             + 
Sbjct: 204 FRNQLIEGEQANLKDFEKESANFFEACLPIEEIARRGVDTMRFGPLKSIGLWNPKWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRENRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  P  L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +     
Sbjct: 324 MHRNTFLESPNLLLPTLQFMKRENLFAAGQITGTEGYAAAAAGGLLAGINASLLAKGKKT 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-- 456
           + F + +S IG +I+ +++K                  +  +   N+  P+    G +  
Sbjct: 384 VSFPK-ESMIGSLINFISNKNQ----------------ILSNQKKNKFQPMPASFGLVPE 426

Query: 457 -----GERRQKRFAKYIQEYNFLRSLLKSL 481
                 ++R +  A   +    L      L
Sbjct: 427 LTKRIKDKRLRYKAYQERSTEALNDFKNKL 456


>gi|190891525|ref|YP_001978067.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
 gi|190696804|gb|ACE90889.1| glucose inhibited division protein A [Rhizobium etli CIAT 652]
          Length = 476

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/499 (18%), Positives = 156/499 (31%), Gaps = 79/499 (15%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI 50
           M   SY  I V+GGG AG EAA   A  G    L           HKT  +  + C+ + 
Sbjct: 1   MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSF 60

Query: 51  GG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                     G +  E+     L+   AD                  G     DR+ +  
Sbjct: 61  RSDDATSNAVGVIHAEMRMAGSLIMAAADRH------------QVPAGGALAVDRDGFSE 108

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI-- 162
           A+ + I     + V++ E+ G       ++ +      +    S +   TG         
Sbjct: 109 AVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDA 168

Query: 163 ---------HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
                        +     R            ++    D  +      A + G T+ + +
Sbjct: 169 IAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKE 228

Query: 214 TEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
            E     +  +P   M ++                                 +   +GP 
Sbjct: 229 WEGTPYFDGCLPIEVMAER-------------------------------GRETLRHGPM 257

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               + +       +    + L  +     +    G  T L    Q +  R IPGL+   
Sbjct: 258 KPMGLTNAHNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLQNAE 316

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
             R G      YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +
Sbjct: 317 FARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAE 376

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
               + I      + +G ++  +T   ++      T     + S +P N +  L P    
Sbjct: 377 RKG-EAILLPPATTALGSLLGHITGGHIV------TDEEPGKRSFQPMNINFGLFPELEP 429

Query: 453 LGCIGERRQKRFAKYIQEY 471
              +     KRF    +  
Sbjct: 430 GSIVKPEGVKRFRGKDKTI 448


>gi|189220272|ref|YP_001940912.1| tRNA:m(5)U-54 MTase Gid, NAD(FAD)-utilizing enzyme
           [Methylacidiphilum infernorum V4]
 gi|189187130|gb|ACD84315.1| tRNA:m(5)U-54 MTase Gid, NAD(FAD)-utilizing enzyme
           [Methylacidiphilum infernorum V4]
          Length = 445

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/488 (20%), Positives = 178/488 (36%), Gaps = 67/488 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           ++V+GGG AG EAA   A+      L           H T  +  + C+ ++G       
Sbjct: 9   IVVVGGGLAGSEAAWQIAQKNIPVFLYEMRPFEPTGAHSTGHLAEIVCSNSLGSNLLSNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L++E+   + L+ R+AD+  +              G     DRE + LA+ R +L  
Sbjct: 69  SGLLLQELRIFNSLLVRIADSCAL------------PAGKALAVDRERFSLAVTRHLLKH 116

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ E+     +   +             +T  LT+  F + +  + +        
Sbjct: 117 PLITVIRKELIELPKDSLCVV------------ATGPLTSPRFAQALQSLLQSPFLYFYD 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
              P     +   +  F   R    +     G  +    +E+Q+    L       +++ 
Sbjct: 165 ALCPLIEASSIDFQHLFVASRYSDPSSP---GDYLNCPLSEEQY--RELCHELAHGERVK 219

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R+ E  I         I+       A    D   +GP     + D   +  +R    + 
Sbjct: 220 LREFEKEIFFEGCLPIEIM-------AQRGPDTLRFGPLRPTGLIDP--KTKKRPYAVVQ 270

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  + +   +    G  T L  + Q +  R IP L+  + IR G      +IN P+ L P
Sbjct: 271 LRQDNVAATLYNMVGFQTNLTFKEQDRIFRIIPALKNAHFIRYGQLHRNTFINSPRVLLP 330

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ +    L  AGQ+ G  GY    A GLVAGIN+AR     + + F R  + IG ++ 
Sbjct: 331 TLQFRANPLLLFAGQLAGCEGYAGNIASGLVAGINAARIFQGREPVVFPR-QTMIGELLW 389

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T                     +P  A+  L    M+     +R  +      +    
Sbjct: 390 YITHADPEH--------------FQPMKANFGLLCAAMEEPLPRDRTARDLLLSQRSLKK 435

Query: 474 LRSLLKSL 481
           + +  +SL
Sbjct: 436 IEAFYQSL 443


>gi|258590887|emb|CBE67182.1| conserved hypothetical protein; putative glucose-inhibited division
           protein (gid) [NC10 bacterium 'Dutch sediment']
          Length = 443

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/493 (20%), Positives = 168/493 (34%), Gaps = 84/493 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG--- 54
           +++V+GGG AG EAA  AA+ GA   L           H+T  +  + C+ ++       
Sbjct: 3   EIVVVGGGLAGSEAAWQAAERGAHVRLYEMRPAYPTPAHRTDRLAELVCSNSLKSDSPDD 62

Query: 55  -KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L RE+ A   ++   A               PA  G     DR+ +   +   +  
Sbjct: 63  CHGLLKRELTAYGSVIMTAA----------RAHAVPA--GSALAVDRDAFAAEVTARLAH 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA-- 171
              + +++ EV     E+     +++    +         T   L G +    +  PA  
Sbjct: 111 HPRITIVRDEVKAIPEERP----VIIATGPL---------TSERLAGALRDRFVNYPASV 157

Query: 172 -----------GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
                           SP  +         F   R   G    L+               
Sbjct: 158 DSSVDTQDLLYFYDAISPIIAGDTIDRTVTFAASRYDKGGDDYLNCPM------------ 205

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED 280
            R     F     T       I       +      I+  A    D   +GP     + D
Sbjct: 206 TREEYRLFWQSIRTAELAP--IHSFEEARYFEGCLPIEVLAARGEDALRFGPMKPVGLID 263

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
              R G R    + L  E     +    G  T L    QH+ +RTIPGL     +R G  
Sbjct: 264 P--RTGRRPCAVVQLRLENREGTMYNIVGFQTRLKWGEQHRILRTIPGLGGAEFLRYGSI 321

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               +IN P  L  T++ K   G+ LAGQ+ G  GY E+A  GL+AGIN+ +  +    +
Sbjct: 322 HRNTFINAPTLLRETMQLKGDPGILLAGQLTGVEGYLESAGSGLLAGINAVKLVHGETPV 381

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGE 458
               T + +G +I  +                   ++ +P N +  L  P+   +    +
Sbjct: 382 VLPPTTA-LGSLIRHICHADA--------------LTFQPMNVNFGLLPPLDQLIRAKRD 426

Query: 459 RRQKRFAKYIQEY 471
           RRQ   A+ ++  
Sbjct: 427 RRQALAARALRNL 439


>gi|159184867|ref|NP_354655.2| tRNA (uracil-5-)-methyltransferase Gid [Agrobacterium tumefaciens
           str. C58]
 gi|26006764|sp|Q8UET6|TRMFO_AGRT5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|159140148|gb|AAK87440.2| glucose inhibited division protein [Agrobacterium tumefaciens str.
           C58]
          Length = 481

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 157/488 (32%), Gaps = 57/488 (11%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI 50
           M ++++  I V+GGG AG EAA   A+ G    L           HK  T+  + C+ + 
Sbjct: 1   MQDKTHSPIHVVGGGLAGSEAAWQIAESGVPVILHEMRGVRGTDAHKGDTLAELVCSNSF 60

Query: 51  GG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                     G +  E+     L+   AD                  G     DR+ +  
Sbjct: 61  RSDDATANAVGVIHAEMRLAGSLIIACADKH------------QVPAGGALAVDRDGFSQ 108

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A+   + +   + V++ EV G   ++   + I              LT+      V    
Sbjct: 109 AVTDMLENHPLVTVVREEVTGLPPKEWGSTVIAT----------GPLTSPDLAAAVQAET 158

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                A     +P     +  M   +   R     P       I     E+Q+     I 
Sbjct: 159 GEDALAFFDAIAPILHRDSINMDICWYQSRYDKVGPGGTGKDYINCPMDEEQY--NVFID 216

Query: 226 FSFMTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                D +  ++           T        I+  A        +GP     + +    
Sbjct: 217 ALIAGDTVGFKEW--------EGTPYFDGCLPIEIMAERGRQTLRHGPMKPMGLTNAHNP 268

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
              +    + L  +     +    G  T L   +Q    R IPGLE     R G      
Sbjct: 269 TV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYSVQADVFRMIPGLENAEFARLGGLHRNT 327

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           YI+ P  L  +L  K    L  AGQI G  GY E+A+ GL+AG  +A +           
Sbjct: 328 YIDSPILLDRSLRLKSRPDLRFAGQITGCEGYVESASVGLLAGRFAAAERKGEAPSLPPA 387

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
           T + +G +++ +T   +       +     + S +P N +  L P       +     KR
Sbjct: 388 TTA-LGSLLNHITGGHLS------SDDEPGKRSFQPMNINFGLFPELEPGSIVKPDGVKR 440

Query: 464 FAKYIQEY 471
           F    +  
Sbjct: 441 FRGKDKTI 448


>gi|297624866|ref|YP_003706300.1| gid protein [Truepera radiovictrix DSM 17093]
 gi|297166046|gb|ADI15757.1| gid protein [Truepera radiovictrix DSM 17093]
          Length = 442

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 173/490 (35%), Gaps = 72/490 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGLG----KG 56
           VIG G AG +AA  AAKLG   AL   + + +           + C+ + GG G    KG
Sbjct: 8   VIGAGMAGSDAAFAAAKLGVKVALYEMRPAKMTPAHRTGSFAELVCSNSFGGEGEANAKG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L RE+ A  GL+   A A  +              G     DRE +   +   +    N
Sbjct: 68  LLQREMLAAGGLVMTSAHATRV------------PAGGALAVDREAFSARVTEALCEHPN 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + V   E+        ++             ++  LT+      +               
Sbjct: 116 ITVHTEELTELPDGVVVV-------------ASGPLTSDALAESLRKSVGEDFLGFYDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P   + +  M   +  GR             +    T++Q+            D +T  
Sbjct: 163 APVIDIDSIDMGIAYRKGRYDQA------ADYLNLPFTKEQY--------DAWYDALTRA 208

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           +         LE        I+  A    D   +GP     +E      GER      L 
Sbjct: 209 RQHTPHDWEKLEFFE-GCMPIEELARRGPDTPRFGPLKPVGLEHP--ETGERPYAVAQLR 265

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            E     +    G  T L    Q + +R IPGL+   ++R G      Y+N P+ L P L
Sbjct: 266 QEDARGQMWSLVGFQTGLKWGDQKEVVRLIPGLQNAEVVRYGVMHRNTYLNAPRLLTPHL 325

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             +    LF+AG + GT GY E++A G +AG N+AR+   L  +    T S +G ++  L
Sbjct: 326 NLRAHPRLFVAGVLAGTEGYLESSATGWLAGTNAARQLLGLAPVLPPET-SMLGGLVRYL 384

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
            S                  + +P NA+  L P   K+   G+ +++R   + +      
Sbjct: 385 ASANPD--------------NFQPMNANWSLVPALPKVRGEGK-KERRARAFRRGLEAFE 429

Query: 476 SLLKSLVLTS 485
             L+ +    
Sbjct: 430 GWLQEVTTPP 439


>gi|158335804|ref|YP_001516978.1| tRNA (uracil-5-)-methyltransferase Gid [Acaryochloris marina
           MBIC11017]
 gi|205830303|sp|B0C6V8|TRMFO_ACAM1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|158306045|gb|ABW27662.1| glucose inhibited division protein A [Acaryochloris marina
           MBIC11017]
          Length = 465

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 103/501 (20%), Positives = 161/501 (32%), Gaps = 71/501 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------THKTSTIGSMSCNPA 49
           ++    + VIGGG AG EAA   A+ G    L              H T  +  + C+ +
Sbjct: 1   MDHQQPIQVIGGGLAGTEAAWQIAQAGWPVILHEMRSVEEERLTPAHHTDQLAELVCSNS 60

Query: 50  IGGLGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
            G        G L  E+  L  ++ R AD                  G     DR ++  
Sbjct: 61  FGAQASDRAAGLLHAELRQLGSIIIRKADEH------------QVPAGGALAVDRGVFSR 108

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
            +   +    N+++ +GEV     +      +V+            LT+      +    
Sbjct: 109 NLTETLAEHPNVELRRGEVPTLPIDGT----VVLTSG--------PLTSAALTESLHQFT 156

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
                +     SP     +      F   R   G  A L+                R   
Sbjct: 157 GQDYLSFFDAASPIIVGESINRDVAFLASRYDRGEAAYLNCPM------------NREQY 204

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
            +F        Q E                 I+  A    D   YGP     + D   R+
Sbjct: 205 LAFWQALCAAEQAELKDFEKETAKFFEGCLPIEEMARRGEDTMRYGPLKPVGLFDA--RY 262

Query: 286 GE---------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           G+         R      L  E     +    G  T L    Q +  + IPGLE    +R
Sbjct: 263 GDFKAPENQKYRPYAVAQLRQEDKAGKLWNLVGFQTNLRWGEQKRVFQMIPGLESAEFVR 322

Query: 337 PGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
            G      +IN P+ L PTL+ K+   L  AGQ+ GT GY  A A G +AG N+ R +  
Sbjct: 323 MGVMHRNTFINAPELLHPTLQFKQRPTLLAAGQLIGTEGYTAATAGGWLAGTNAVRLAQG 382

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGC 455
           L+ +    T +  G + + ++S     P         + I     +   R+     + G 
Sbjct: 383 LNPVVLP-TTTMSGSLFEFISSAT---PKHFQPMPPNFGII---PDLPQRVRNKRERYGV 435

Query: 456 IGERRQKRFAKYIQEYNFLRS 476
             +R       +I E +  R 
Sbjct: 436 YRDRALADLTAWIAEPSLFRQ 456


>gi|227821950|ref|YP_002825920.1| protein Gid-like protein [Sinorhizobium fredii NGR234]
 gi|227340949|gb|ACP25167.1| protein Gid-like protein [Sinorhizobium fredii NGR234]
          Length = 587

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 155/485 (31%), Gaps = 56/485 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + V+GGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 125 IHVVGGGLAGSEAAWQIAEAGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSN 184

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+ R AD                  G     DR+ +  A+  +I S
Sbjct: 185 AVGVLHAEMRLAGSLIMRAADH------------NQVPAGGALAVDRDGFSQAVGAQIES 232

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + V++ E+      +  ++ +              LT       +         A  
Sbjct: 233 HPLISVVREEIDDLPPREWDLAIVAT----------GPLTAPALAEAIRRETGADALAFF 282

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P        M   +   R     P       I    TE Q+     +     +DK 
Sbjct: 283 DAIAPIVYTETIDMDVCWHQSRYDKVGPGGTGKDYINCPMTEVQY--NAFVDALIASDKT 340

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 341 GFKEW--------EGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNA-HNPSVKPYAV 391

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    R IPGLE     R G      YIN P  L
Sbjct: 392 VQLRQDNALGTLYNMVGFQTKLKYGAQTDVFRMIPGLENAEFARLGGLHRNTYINSPILL 451

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             +L  K   GL  AGQI G  GY E+A+ GL+AG  +A +           T ++ G +
Sbjct: 452 DGSLTLKSRPGLRFAGQITGCEGYVESASIGLLAGRFAAAERKGEKPSLPPATTAF-GAL 510

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           ++ +T   ++      +     + S +P N +  L P             KRF    +  
Sbjct: 511 LNHITGGHIV------SDDEPGKRSFQPMNINFGLFPPLEAGALTKPEGAKRFRGKEKAV 564

Query: 472 NFLRS 476
              ++
Sbjct: 565 AKKQA 569


>gi|253583756|ref|ZP_04860954.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium varium ATCC
           27725]
 gi|251834328|gb|EES62891.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium varium ATCC
           27725]
          Length = 437

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 165/454 (36%), Gaps = 56/454 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +VI++G G AGCEAA   AK G    L           HK      + C+ ++GG     
Sbjct: 5   EVIIVGAGLAGCEAAYQLAKRGIKVKLYEMKAKKMTEAHKKDYFAELVCSNSLGGDNLAN 64

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ ++AD            + PA +      DR+ + + +   + +
Sbjct: 65  ASGLMKEELRKLDSLLIKIADK----------NRVPAGQALA--VDRDGFSVEVTEYLRN 112

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I  E      +K            +I  ++  LT+    + +  +   +     
Sbjct: 113 MENIEIIDEEFTEIPEDK------------IILIASGPLTSEVLSKKIAKLTHSEHLYFY 160

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +L +  M+  +   R   G    ++                +   ++F    I
Sbjct: 161 DAAAPIVTLESINMEKAYRQSRYGKGEGEYINCPM------------NKEEYYTFYNALI 208

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           T  ++    T    +     M  ++  A+       +GP     + +   +  + +   +
Sbjct: 209 TAERVPL-KTFEEEKLFEACM-PVERIAMTGERTLVFGPLKPKGLINP--KTDKMDYAVV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +  +  +    G  T L    Q +    IPGLE    +R G      +I+  K L 
Sbjct: 265 QLRQDDKDGKLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFIDSSKLLD 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TL+ K    ++ AGQI G+ GY  + + G +A IN A +             S IG +I
Sbjct: 325 ETLKLKASDNIYFAGQITGSEGYVSSISTGAMAAINIAHRLLGKSPFILDD-RSAIGAII 383

Query: 413 DDLT-SKGVLEPYRMFTSRAEYRISLRPDNADNR 445
             +T  K   +P             +R  +   R
Sbjct: 384 KYITEEKKNFQPMGPNFGIIRSLDGIRIKDKKER 417


>gi|90424269|ref|YP_532639.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisB18]
 gi|122476120|sp|Q213W6|TRMFO_RHOPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|90106283|gb|ABD88320.1| gid protein [Rhodopseudomonas palustris BisB18]
          Length = 476

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 40/449 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V V+GGG AG EAA   A+ G    L   + + +        +  L   +  R  DA   
Sbjct: 9   VHVVGGGLAGSEAAWQIAQAGVRVVLHEMRPARMTEAHRTEGLAELVCSNSFRSDDAANN 68

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ +GE
Sbjct: 69  AVGLLHAEMRKLGSLVMRAADANQVPA--GGALAVDRDGFSAAVTKALAEHPLIELQRGE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G          +V+            LT+      +  +      A     +P     
Sbjct: 127 LDGLPPSDWG--HVVIATG--------PLTSAPLASAIQALTGEDSLAFFDAIAPIVHRD 176

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    T +Q+  E  +      DK+  +  E    
Sbjct: 177 SIDMSVAWFQSRYDKVGPGGNGADYINCPMTREQY--EGFVAALISGDKVDFKDWE---- 230

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGL 300
            TN          I+  A    +   +GP     +    D  V    +    + L  +  
Sbjct: 231 -TNTPYFD-GCLPIEVMAERGAETLRFGPMKPVGLTNPKDPTV----KPYAIVQLRQDNK 284

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  R+IPGLE     R G      ++N PK L   L  + 
Sbjct: 285 LGTLYNLVGFQTKLKHGEQSRIFRSIPGLENAEFARLGGLHRNTFLNSPKLLDQQLRLRA 344

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              L  AGQ+ G  GY E+A+ GL+AG+ +A ++  +  +    + + +G ++  +T   
Sbjct: 345 EPRLRFAGQMTGCEGYVESASIGLIAGLYAAAEARDI-ALAPPPSTTALGALLGHITGGH 403

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +        +      S +P N +  L P
Sbjct: 404 IE-------TIDAGPRSFQPMNVNFGLFP 425


>gi|304391783|ref|ZP_07373725.1| tRNA:M(5)U-54 methyltransferase [Ahrensia sp. R2A130]
 gi|303296012|gb|EFL90370.1| tRNA:M(5)U-54 methyltransferase [Ahrensia sp. R2A130]
          Length = 471

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 159/500 (31%), Gaps = 86/500 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V +IGGG AG EAA   A+ G    L           H+T  +  + C+ +         
Sbjct: 6   VHIIGGGLAGSEAAWQLAEAGHHVILHEMRGIRGTEAHQTDRLAELVCSNSFRSDDARAN 65

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+     L+ R AD                  G     DREL+   +   I +
Sbjct: 66  AVGLLHQEMRMSGSLIMRCADET------------QVPAGSALAVDRELFAGKVNDAIDA 113

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRG-------VIHI- 164
             N+ +I+ EV G   +    + I      +    +++   TG            +IH  
Sbjct: 114 HPNITLIREEVTGLPPKDWGTTIIATGPLTAPDLAASIAAETGQDALAFFDAIAPIIHFD 173

Query: 165 ---GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                      R            ++    D  + +    A + G    + + E     +
Sbjct: 174 SVDMDKAWFQSRYDKVGPGGTGKDYLNCPMDRDQYEAFIDALIAGDKAEFKQWENVPYFD 233

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     +   
Sbjct: 234 GCLPIEIMAER-------------------------------GRETPRHGPMKPMGLT-N 261

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
           +     +    + L  +     +    G  T L    Q +  R IPGLE     R G   
Sbjct: 262 VHNPTAKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQTEIFRLIPGLENAEFARLGGLH 321

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y++ P+ L  TL  +    +  AGQI G  GY E+A  GL+ G    ++        
Sbjct: 322 RNTYLDSPRLLDDTLRLRSRPEVRFAGQITGCEGYVESATIGLMTGRFIVQERAGHKPQL 381

Query: 401 FSRTDSYIGVMIDDLTSKGV--LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
              T +  G +++ +T   +   EP        + + S +P N +  L P    +  +  
Sbjct: 382 PPETTAM-GALLNHITRGHIAYDEP--------QGKKSFQPMNVNFGLFP---PVQIVKP 429

Query: 459 RRQK-RFAKYIQEYNFLRSL 477
              + R+    +     R+L
Sbjct: 430 EDHEGRWRGKDKAIAKKRAL 449


>gi|85859216|ref|YP_461418.1| tRNA (uracil-5-)-methyltransferase Gid [Syntrophus aciditrophicus
           SB]
 gi|123516460|sp|Q2LT41|TRMFO_SYNAS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|85722307|gb|ABC77250.1| glucose inhibited division protein A [Syntrophus aciditrophicus SB]
          Length = 441

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 158/471 (33%), Gaps = 51/471 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++++  + +IGGG AGCEAA      G S  L   K         +  +  L   + +R 
Sbjct: 1   MSKNDSIAIIGGGLAGCEAAWQLLNKGHSVTLYEMKPVNFSPAHRSSHLAELVCSNSLRS 60

Query: 62  ---IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
               +A   L   +     +     +    PA R      DR  +   +++++     L 
Sbjct: 61  NIIENAAGTLKEEMRRMNSLIMSAADATSVPAGRALA--VDRRAFSKFIEKKLKEFPKLT 118

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +I  E+     +  +I             +T  LT+ +  + +  I            SP
Sbjct: 119 IIHQEITDIPADGLVII------------ATGPLTSDSLSQSIAGITGNSYLYFYDAISP 166

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                +   +  F   R          G  +     ++++  E           ++ R  
Sbjct: 167 VIEADSIDYEKVFRASRYDDDGQ----GDYLNCSMGKEEY--ELFWKTLTEGQTVSLRDF 220

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           E            +I                +GP     I D   + G++    I L  E
Sbjct: 221 EDYKYFEGCLPIEVIAG-------RGVSTLLFGPMKPVGIVDP--KTGKQPYAVIQLRQE 271

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                +    G  T L    Q +  R IPGL      R G      +IN P  L  TL+ 
Sbjct: 272 NREATLFNIVGFQTKLTWTEQRRIFRMIPGLGNAEFARYGSIHRNTFINSPALLEKTLQL 331

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K    +F AGQI G  GY E+ A GL+AG++ +              ++ +G +++ +T 
Sbjct: 332 KTAEHIFFAGQITGVEGYIESTAMGLMAGLSVSEFHKGKS-FLPPPPETAMGALLNHITD 390

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKY 467
               +               +P N +  L +P+  K+      R +R+A  
Sbjct: 391 TDSKQ--------------FQPMNINWGLVSPLPGKV--KKRERGERYAHR 425


>gi|254430149|ref|ZP_05043852.1| tRNA:m(5)U-54 methyltransferase [Cyanobium sp. PCC 7001]
 gi|197624602|gb|EDY37161.1| tRNA:m(5)U-54 methyltransferase [Cyanobium sp. PCC 7001]
          Length = 463

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 160/489 (32%), Gaps = 64/489 (13%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGK 55
           +VIG G AG EAA   A+ G    L+          H +     + C+ + G        
Sbjct: 4   LVIGAGLAGTEAAWQIAQSGLPVRLVEMRPVRRSPAHHSGEFAELVCSNSFGALSSDRAA 63

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L +E+ +L  L+   AD   +              G     DR  Y  A+   +    
Sbjct: 64  GLLQQELRSLGSLVIGTADHHAV------------PAGGALAVDRGRYSAALTEALERHP 111

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + V + E  G      I         S      +   TG   R   H       A  + 
Sbjct: 112 LVTVERREQTGLPAADQIAVLATGPLTSEPLAEQLRAFTG---RADCHFFD---AASPIV 165

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  S  L  +F    +D G          D   I      +Q+   R    +    ++ +
Sbjct: 166 EGDSIDLGVAFRASRYDKG----------DADYINCPMGREQYLAFRAALLAAEQAELKD 215

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFGE 287
                        +       I+  A    D   YGP     + D          VR   
Sbjct: 216 -------FEKESASFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDREVRRAR 268

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  E  +  +    G  T L    Q + +R IPGLE+   +R G      ++ 
Sbjct: 269 RAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMIPGLEQAEFVRFGVMHRNTFLE 328

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR +  L+ +    T +
Sbjct: 329 APQLLDPTLQFRRRPTLLAAGQITGTEGYAAAVAGGWLAGTNAARLARGLEPLTLPPT-T 387

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G +   +         R       + +         R+     + G   +R       
Sbjct: 388 MMGALAHFIAEAPSG---RFQPMPPNFGLL---PELPERIRDKRRRYGAYRDRALADLDA 441

Query: 467 YIQEYNFLR 475
           + + +   +
Sbjct: 442 WRRHHGEAQ 450


>gi|327189119|gb|EGE56304.1| glucose inhibited division protein A [Rhizobium etli CNPAF512]
          Length = 478

 Score =  249 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/499 (19%), Positives = 155/499 (31%), Gaps = 79/499 (15%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI 50
           M   SY  I V+GGG AG EAA   A  G    L           HKT  +  + C+ + 
Sbjct: 1   MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSF 60

Query: 51  GG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                     G +  E+     L+   AD                  G     DR+ +  
Sbjct: 61  RSDDATSNAVGVIHAEMRMAGSLIMAAADRH------------QVPAGGALAVDRDGFSE 108

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI-- 162
           A+ + I     + V++ E+ G       ++ +      +    S +   TG         
Sbjct: 109 AVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDA 168

Query: 163 ---------HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
                        +     R            ++    D  +      A + G T+ + +
Sbjct: 169 IAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKE 228

Query: 214 TEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
            E     +  +P   M ++                                 +   +GP 
Sbjct: 229 WEGTPYFDGCLPIEVMAER-------------------------------GRETLRHGPM 257

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
               + +       +    + L  +     +    G  T L    Q    R IPGLE   
Sbjct: 258 KPMGLTNAHNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLESAE 316

Query: 334 IIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
             R G      YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +
Sbjct: 317 FARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAE 376

Query: 393 SNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
               + I      + +G ++  +T   ++      T     + S +P N +  L P    
Sbjct: 377 RKG-EAILLPPATTALGSLLGHITGGHIV------TDEEPGKRSFQPMNINFGLFPELEP 429

Query: 453 LGCIGERRQKRFAKYIQEY 471
              +     KRF    +  
Sbjct: 430 GSIVKPEGVKRFRGKDKTI 448


>gi|121602120|ref|YP_988865.1| tRNA (uracil-5-)-methyltransferase Gid [Bartonella bacilliformis
           KC583]
 gi|166989559|sp|A1USB2|TRMFO_BARBK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|120614297|gb|ABM44898.1| gid protein [Bartonella bacilliformis KC583]
          Length = 464

 Score =  249 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 176/496 (35%), Gaps = 46/496 (9%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M+N+ +  + +IGGG AG EA+   A+LG    L   +   +        +  L   +  
Sbjct: 1   MLNKLNLPIHIIGGGLAGSEASWQIAQLGIPVILHEMRPQRLSEAHKTDKLAELVCSNSF 60

Query: 60  REID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  D    A+  L   +  A  +  +  +  K PA  G     DR+ +   +   + +  
Sbjct: 61  RSDDSLTNAVGLLHAEMRLAKSLIMKAADANKVPA--GSALAVDRDGFSQTVTESLENHP 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + + + E+     E     ++++            LT+      +  +   +  +    
Sbjct: 119 LITIKREEIHDIP-ENW--HNVIIATG--------PLTSPALAYAIQAVTGTEALSFFDA 167

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P       I     ++Q+  E  I      +KI  
Sbjct: 168 IAPIIYTDSINMNICWYQSRYDKIGPGGTGKDYINCPLDKEQY--EAFIQALKDGEKIEF 225

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
           R+ E            ++ E          +   +GP     + +      + +    + 
Sbjct: 226 REFENVPYFDGCLPIEVMAE-------RGVETLRHGPMKPMGLTN--THTPKVKAYAIVQ 276

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  + +   +    G  T L    Q +  RTIPGLEK    R G      Y++ P  L  
Sbjct: 277 LRQDNMLGTLYNMVGFQTKLKYSEQVRIFRTIPGLEKAEFARLGGLHRNTYLDSPTILDE 336

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL  KK   L  AGQI G  GY E++A GL+AG  +A + N        +T ++ G +++
Sbjct: 337 TLRLKKKPQLRFAGQITGCEGYVESSAIGLLAGRFAAAEYNNTYPSLPPKTTAF-GALLN 395

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG-------MKLGCIGERRQKRFAK 466
            +TS           ++   + S +P N +  L P           +    ++  KR A 
Sbjct: 396 HITS-------GYIVTQETEKHSFQPMNINFGLFPPIDSTNHQRKTMQYKEKKLAKRQAI 448

Query: 467 YIQEYNFLRSLLKSLV 482
             +  N     L  L 
Sbjct: 449 VERALNDCTQWLNGLK 464


>gi|197105412|ref|YP_002130789.1| glucose inhibited division protein [Phenylobacterium zucineum HLK1]
 gi|226707907|sp|B4RDH0|TRMFO_PHEZH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|196478832|gb|ACG78360.1| glucose inhibited division protein [Phenylobacterium zucineum HLK1]
          Length = 466

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 103/495 (20%), Positives = 167/495 (33%), Gaps = 67/495 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG-----GL 53
           + V+GGG AG EAA   A+ G    L           H T  +  + C+ +       G 
Sbjct: 6   IHVVGGGLAGSEAAWQIAEAGVPVVLHEMRPVRRTDAHHTDRLAELVCSNSFRADDWTGN 65

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++    DA                 G     DRE +  A+   + +
Sbjct: 66  AVGLLHAEMRRLGSIIMSAGDAH------------QVPAGGALAVDREGFSQAVTERLEA 113

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+AG   +     S+++            LT+      V+ +      +  
Sbjct: 114 HPLVTIAREEIAGLPPQDWD--SVILATG--------PLTSPALADAVLKLTGEDQLSFF 163

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I    TE Q+  E  I       K 
Sbjct: 164 DAIAPIVHFESIDMDVAWRQSRYDKAGPGGDAAAYINCPMTEAQY--EAFIDALLAAPKA 221

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             ++ E  +   +          I+  A    +   +GP     + +   R  E+    +
Sbjct: 222 EFKEWE-HVPYFD------GCLPIEVMAERGRETLRHGPMKPVGLTNA-HRPDEKPHAVV 273

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  R IPGLEK    R G      +IN P+ L 
Sbjct: 274 QLRQDNALGTLWNMVGFQTKLKHGAQTEVFRMIPGLEKAVFARLGGLHRNTFINSPRLLD 333

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K    L  AGQ+ G  GY E+AA GL+AG  +A +      +    T + +G +I
Sbjct: 334 GVLRLKAQPRLRFAGQVTGVEGYVESAAVGLLAGRFAAAERLGRPAVAPPPTTA-LGGLI 392

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKR 463
             +T   +               S +P N +  L P          G +LG   + R K+
Sbjct: 393 GHITGGHLE----------GGSGSFQPMNINYGLIPPIAPPKRDAEGRRLGAKEKTRIKK 442

Query: 464 FAKYIQEYNFLRSLL 478
                +    L + L
Sbjct: 443 RLVGERALADLEAWL 457


>gi|15965296|ref|NP_385649.1| tRNA (uracil-5-)-methyltransferase Gid [Sinorhizobium meliloti
           1021]
 gi|307307886|ref|ZP_07587611.1| gid protein [Sinorhizobium meliloti BL225C]
 gi|26006769|sp|Q92Q15|TRMFO_RHIME RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|15074476|emb|CAC46122.1| NAD(FAD)-utilizing enzyme [Sinorhizobium meliloti 1021]
 gi|306901502|gb|EFN32105.1| gid protein [Sinorhizobium meliloti BL225C]
          Length = 472

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/497 (19%), Positives = 158/497 (31%), Gaps = 78/497 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + VIGGG AG EAA   A+ G    L           HKT ++  + C+ +         
Sbjct: 11  IHVIGGGLAGSEAAWQIAEAGVPVILHEMRGVRGTDAHKTESLAELVCSNSFRSDDATSN 70

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+ R AD        LN        G     DRE +  A+   I  
Sbjct: 71  AVGVLHAEMRLAGSLIMRCAD--------LN----QVPAGGALAVDREGFAEAVSAAIAD 118

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTGTF------LRGV 161
              + V++ E+ G   +   ++ I             IR  T       F      +   
Sbjct: 119 HPLITVLREEIRGLPPKDWDLAIIATGPLTAPDLAEAIRAETGADALAFFDAIAPIVHAD 178

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++       +      A + G    + + E     +
Sbjct: 179 TIDMDICWHQSRYDKVGPGGTGKDYINCPLTQEQYDAFVDALIAGDKAGFKEWEGTPYFD 238

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 239 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 267

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q +  R IPGL+     R G   
Sbjct: 268 -HNPSVKPYAVVQLRQDNALGTLYNMVGFQTKLKYGAQGEVFRMIPGLQNAEFARLGGLH 326

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L  +L  K   GL  AGQI G  GY E+A+ GL+AG  +A +   +  + 
Sbjct: 327 RNTYINSPTLLDHSLTLKSRPGLRFAGQITGCEGYVESASIGLLAGRFAAAERKGVSPVL 386

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
              T ++ G ++D +T   ++      +     + S +P N +  L P            
Sbjct: 387 PPVTTAF-GALLDHITGGHIV------SDDEPGKRSFQPMNINFGLFPPLEPGALTRPEG 439

Query: 461 QKRFAKYIQEYNFLRSL 477
            KRF    +     +++
Sbjct: 440 AKRFRGKEKALAKKQAM 456


>gi|332186143|ref|ZP_08387889.1| tRNA:m(5)U-54 methyltransferase [Sphingomonas sp. S17]
 gi|332013958|gb|EGI56017.1| tRNA:m(5)U-54 methyltransferase [Sphingomonas sp. S17]
          Length = 464

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/493 (21%), Positives = 168/493 (34%), Gaps = 72/493 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG-- 52
           +YD+ VIGGG AG EAA   A+ G +  L            H    +  + C+ +     
Sbjct: 2   NYDIHVIGGGLAGSEAAWQLAEAGLTVRLSEMRGGADTTPAHHGGDLAELVCSNSFRSDD 61

Query: 53  ---LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L +E+ AL  ++    D              PA  G     DR+ +   +  
Sbjct: 62  ATSNAVGLLHQEMRALGSIIMAKGD----------THAVPA--GSALAVDRDGFSGGVTA 109

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            + +  N+ +++  +        II             +T  LT  +   G+      + 
Sbjct: 110 ALEAHPNITIVRERIDALPEGPAII-------------ATGPLTAPSLAGGIGEATGAEA 156

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A     +P     +  M   +   R   GT        I     ++Q+           
Sbjct: 157 LAFFDAIAPIVHRESIDMDVAWFQSRWNKGTS----KDYINCPMDKEQYY--AFHQALLD 210

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            +K   R+ E      +          ++  A    +   +GP     ++D   R G   
Sbjct: 211 GEKTEFREWEKDTPYFD------GCMPVEVMAERGVETLRFGPMKGVGLDDP--RTGRWP 262

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NP 348
              + L  +     +    G  T L    Q +  RTIPGLEK    R G      +I +P
Sbjct: 263 YAVVQLRQDNAAGTLWNIVGFQTKLKYAEQIRIFRTIPGLEKAEFARLGGLHRNTFIRSP 322

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L  TL  K    L  AGQI G  GY E+AA GL+AG  +A +      I     ++ +
Sbjct: 323 ELLDATLRLKSRPNLRFAGQITGCEGYIESAAIGLLAGRFAAAELTG-KTIAPPPVETAL 381

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G ++  +T     E Y             +P N +  L P  +        R+K +    
Sbjct: 382 GALLGHITGLAEAETY-------------QPMNVNFGLFP-PIPGRTKKADRKKMYTD-- 425

Query: 469 QEYNFLRSLLKSL 481
           +    L   L SL
Sbjct: 426 RAREALPGWLNSL 438


>gi|237757173|ref|ZP_04585596.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690664|gb|EEP59849.1| tRNA:M(5)U-54 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 438

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 161/486 (33%), Gaps = 55/486 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E A   A+ G    L   +          P    +   +         G
Sbjct: 3   VAVIGAGLAGSEVAYKIAQAGYKVDLYEMRPEKQTPAHKTPYFAEIVCSNSFGSESLTSG 62

Query: 68  LMGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                 +   +   +L+V K      G     DRE +   +   + +  N++VI+ EV  
Sbjct: 63  AGLLKKEMEILGSIILDVAKEFKVPAGQAFAVDREKFSKRLTEILENHPNINVIRQEVKT 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                 I+             +T  LT+  F + +  I   +        +P        
Sbjct: 123 LPDADIIVI------------ATGPLTSEEFSKEIQKITGSEYLYFYDAIAPVVDASTVD 170

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R   GT    +          KQ  +       F  + +   Q+        
Sbjct: 171 FSKGFWADRYGKGTGDYFNC------VLSKQEYEI------FYQELLKGEQVPLKDF--E 216

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
              +      I+  A    +   YGP     + D   + G+R    + L  E +   ++ 
Sbjct: 217 RAVYFEGCLPIEEIARRGKETLLYGPMKPVGLIDP--KTGKRPYAVVQLRKENIEGTLLS 274

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFL 365
             G  T L    Q +    IP L+    ++ G      +I   K L PTL+ ++   +  
Sbjct: 275 LVGFQTKLKYPEQKRIFSLIPALKDAEFVKLGSIHRNTFIQSQKLLKPTLQLREKPNILF 334

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY  +AA G++AGIN  R     + +   +T + IG +I+ +T+        
Sbjct: 335 AGQITGVEGYMASAATGIIAGINVVRMLEGKEPVIPPKT-TMIGGLINYITT-------- 385

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
                           A N L P+G     + E  +K   K  ++       LK +    
Sbjct: 386 ----------------AKNELQPMGPNYALLPELEEKIKGKEERKLKKAEIALKDIKEWI 429

Query: 486 KNLSST 491
           K + S 
Sbjct: 430 KEIESA 435


>gi|15606096|ref|NP_213473.1| tRNA (uracil-5-)-methyltransferase Gid [Aquifex aeolicus VF5]
 gi|26006757|sp|O66913|TRMFO_AQUAE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|2983279|gb|AAC06872.1| glucose inhibited division protein A [Aquifex aeolicus VF5]
          Length = 445

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 164/487 (33%), Gaps = 52/487 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGG AG EAA   A  G    L   +   +        +  L   + +  ++   G
Sbjct: 5   VIVIGGGLAGSEAAWRLANEGHRVILYEMRPKKMTPAHKTGNLAELVCSNTLGGLELTTG 64

Query: 68  LMGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +   V+   K      G     DR+++   +  +I S  N+ +I+ EV  
Sbjct: 65  AGLLKAEMQKLGSLVIEAAKVARVPAGGALGVDRKIFSEYITEKIESHPNITLIREEVKE 124

Query: 127 FNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              ++ ++  +  +  D    +   +V     +    I           + ++ S     
Sbjct: 125 IPEDEVVVIATGPLTSDALSEKIKELVGYDTLYFYDAIA---------PIVEAESVDFSK 175

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G     +      +  +               +K+  +  E  +  
Sbjct: 176 -----GFWGSRYGKGGDDYFNCVLTEEEYKKF-------YEELLKAEKVKPKDFEKAVHF 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   + E              +GP     + D   R G+     + L  E     +
Sbjct: 224 EGCLPIEEMAE-------RGYKTLLFGPMKPVGLVDP--RTGKEPFAVVQLRKENKEGTL 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGL 363
           +   G  T L  + Q +  R IP L     +R G      +I   K L   L  KK   +
Sbjct: 275 LSLVGFQTKLTYKEQKRVFRLIPCLRNAVFVRLGSMHRNTFIQSNKVLTHYLNLKKKENI 334

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY  ++A G++AGIN+ R +     +    T++ +G +++ + +K     
Sbjct: 335 FFAGQITGVEGYVASSATGILAGINAGRLARGEKPLKAP-TETMLGALVNYIVTKE---- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                        L+P N    L P   K     ++R++  A   +    +   +K   L
Sbjct: 390 -----------GELQPMNPVFGLLPPLEKKVRDKKKRKELMA--KRALETMEKWIKENNL 436

Query: 484 TSKNLSS 490
             + L  
Sbjct: 437 VPEGLVK 443


>gi|162319788|ref|YP_421845.2| tRNA (uracil-5-)-methyltransferase Gid [Magnetospirillum magneticum
           AMB-1]
 gi|205830457|sp|Q2W4D9|TRMFO_MAGSA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 447

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/493 (20%), Positives = 167/493 (33%), Gaps = 67/493 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V VIGGG AG EAA   A+      L   +            +  L   + +R  DA   
Sbjct: 5   VHVIGGGLAGSEAAWQLAQADIPVILHEMRPVRTTPAHQTDGLAELVCSNSLRSDDADYN 64

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +  A  +     +  K PA  G     DR+ +   +Q  +     + +++ E
Sbjct: 65  AVGLLHEEMRRAGSLILAQADAHKVPA--GGALAVDRDGFSQGVQAALAGHPRITILREE 122

Query: 124 VAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI-----HIGKLKIPAGRMGDS 177
           VAG   E      I      S      +   TG             + K  I  G+    
Sbjct: 123 VAGLPPEDWEQVVIATGPLTSPAMAEALRGMTGEDSLAFFDAIAPIVTKDSIDFGKAWFQ 182

Query: 178 PSN--SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-FADERLIPFSFMTDKIT 234
                   + ++    D  +  T   A + G+ + + + EK     E  +P   M ++  
Sbjct: 183 SRYDKGTGSDYINCPLDREQYNTFIDALITGEKVDFHEWEKDTPYFEGCLPIEVMAER-- 240

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                                          D  +YGP     + +     G +    + 
Sbjct: 241 -----------------------------GKDTLAYGPMKPVGLTNPN---GPKPFAVVQ 268

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE     R G      +IN P+ L  
Sbjct: 269 LRQDNALGTLYNLVGFQTKLRHGEQARIFRAIPGLENAEFARLGGLHRNTFINGPRVLDR 328

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL  K    L LAGQ+ G  GY E++A GL+AG+ +A ++   D +    T + +G +++
Sbjct: 329 TLRLKAQPRLRLAGQVTGCEGYVESSAIGLLAGLFAAAEALGRDMLRPPATTA-LGALLN 387

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER---RQKRFAKYIQE 470
            +T     E Y             +P N +  L P   +    G R   R ++     + 
Sbjct: 388 HVTGDAEAETY-------------QPMNINFGLFPPPPERDERGRRVKGRDRKKLYAQRA 434

Query: 471 YNFLRSLLKSLVL 483
              L   L ++  
Sbjct: 435 REALTPWLNTIRE 447


>gi|325290383|ref|YP_004266564.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965784|gb|ADY56563.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 444

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 162/485 (33%), Gaps = 79/485 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIG----GL 53
           ++ VIG G AG EAA   A       L   +               + C+ ++       
Sbjct: 3   EITVIGAGLAGSEAAWQLACRDVEVTLCEMRPGISTPAHVSGDFAELVCSNSLRAAGLEN 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L+ L+   AD   +              G  T  DR+ +   +   + +
Sbjct: 63  AAGLLKEEMRRLNSLIMLAADKHAV------------PAGGATAVDRKFFSTEITERLEN 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+     +  +I             ++  LT+ +    ++ +   K  +  
Sbjct: 111 HPKVKIKREEITAIPRKGVVIV------------ASGPLTSASLAEDIMDLTGEKALSFF 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P   L +  +   F   R   G    L+      ++ E     + LI      +  
Sbjct: 159 DAAAPIVELDSVDLTKAFWASRYDKGEADYLNCPM---NEQEYNHFYQELIKA----ETA 211

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E  +         ++               ++GP     + D   R G++    +
Sbjct: 212 EVKGFEKNMVFEGCMPIEVMAG-------RGPMTMAFGPLKPVGMVDP--RTGKQPFAVV 262

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E L   ++   G  T L    Q +  R IPGLE     R G      ++N PK L 
Sbjct: 263 QLRKENLEGSLLNLVGFQTHLKWGEQKRVFRMIPGLENAEFARYGVMHRNTFLNSPKVLQ 322

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
                +    +F AGQI G  GY E+AA GL+AGIN+ R    L+ + F   ++ +G + 
Sbjct: 323 ADFRLRNKPEIFFAGQITGVEGYVESAASGLLAGINAFRFLRGLETLVFPP-ETALGGLA 381

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             L     ++                         P+ +  G I + + +R     ++  
Sbjct: 382 GHLERSPTVD-----------------------FQPMNINFGLISQLK-ERTRNKREKNK 417

Query: 473 FLRSL 477
            +   
Sbjct: 418 RISER 422


>gi|283768284|ref|ZP_06341196.1| tRNA:M(5)U-54 methyltransferase [Bulleidia extructa W1219]
 gi|283104676|gb|EFC06048.1| tRNA:M(5)U-54 methyltransferase [Bulleidia extructa W1219]
          Length = 432

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 149/444 (33%), Gaps = 50/444 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           V VIG G AGCEA    AK G    L   K         +     L   +  R     +A
Sbjct: 3   VRVIGAGLAGCEATYQLAKRGFEVDLYEMKPIKFSPAHHSDYFAELVCSNSFRSDALTNA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  +V +  K PA  G     DR+ + L + R I    N+ +   E+
Sbjct: 63  IGVLKNELRMMDSLIMKVADETKIPA--GSALAVDRDRFSLEVTRRIQKMANVTIHHEEI 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +     I             ++  L++    + +    + K        +P  +L +
Sbjct: 121 QTLDVSLPTIV------------ASGPLSSEAISKSIQEYFQEKDFYFYDAAAPIVTLES 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G    ++                +    +F    IT    E     
Sbjct: 169 IDFNKAYRKSRYDKGGDDYINCPM------------NQEEFMAFYQAVITAETAETH--H 214

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E +       +  A        +GP     +E    +  E     + L  +     +
Sbjct: 215 FEKEIYFEGCMPFEVMAKRGMKTLLFGPMKPVGLEQ---KGKENPYAVVQLRQDNAAASL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + I+ IPGLEK  I+R G      YIN PK L  T    +   L
Sbjct: 272 YNIVGFQTHLKWPEQKKVIQLIPGLEKAEIVRYGVMHRNSYINSPKYLEDTYRVSREEKL 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+ A G VAGIN A+     + I F +  + IG M   ++       
Sbjct: 332 FFAGQMTGVEGYIESCASGFVAGINMAQILQGQEEIHFGQ-GTMIGAMAHYISHASTT-- 388

Query: 424 YRMFTSRAEYRISLRPDNADNRLT 447
                       + +P NA+  + 
Sbjct: 389 ------------NFQPMNANFGIM 400


>gi|298292207|ref|YP_003694146.1| gid protein [Starkeya novella DSM 506]
 gi|296928718|gb|ADH89527.1| gid protein [Starkeya novella DSM 506]
          Length = 476

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/457 (22%), Positives = 160/457 (35%), Gaps = 57/457 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG-----GL 53
           V VIGGG AG EAA   A+ G S  L           HKT  +  + C+ +         
Sbjct: 9   VHVIGGGLAGSEAAWQLARRGVSVVLHEMRPERGTDAHKTDDLAELVCSNSFRSDDAQNN 68

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  L+   AD   I              G     DR+ +  A+   I S
Sbjct: 69  AVGVLHAEMRRLGSLIMACADRHQI------------PAGGALAVDRDGFSAAVTEAIAS 116

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +  + V +GE+AG   E     S+++            LT+      +      +  A  
Sbjct: 117 RPEITVERGEIAGLPPEDWD--SVIVATG--------PLTSPALAEAIRARTDERALAFF 166

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +     +D +
Sbjct: 167 DAIAPIVHFDSIDMDVCWFQSRYDKAGPGGTGADYINCPMDKEQY--EAFVAALIASDTV 224

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             R+           T        I+  A    +   +GP     + +       +    
Sbjct: 225 PFREF--------ENTPYFDGCLPIEVMAARGPETLRHGPMKPMGLTNAHNPTV-KPYAV 275

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T      Q +  R IPGLEK    R G      Y+N PK L
Sbjct: 276 VQLRQDNALGTLFNMVGFQTKTRHGEQTRLFRMIPGLEKAEFARLGGLHRNTYLNSPKLL 335

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  +    L  AGQI G  GY E++A GL+AG+ +A +           T ++ G +
Sbjct: 336 DTTLRLRAEPRLRFAGQITGCEGYVESSAMGLMAGLFAAAEQRGETPALPPATTAH-GAL 394

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           ++ +T   +       T  A  R S +P N +  L P
Sbjct: 395 LNHITGGHIE------TVEAGPR-SFQPMNINFGLFP 424


>gi|307317060|ref|ZP_07596501.1| gid protein [Sinorhizobium meliloti AK83]
 gi|306897148|gb|EFN27893.1| gid protein [Sinorhizobium meliloti AK83]
          Length = 472

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/497 (19%), Positives = 156/497 (31%), Gaps = 78/497 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + VIGGG AG EAA   A+ G    L           HKT ++  + C+ +         
Sbjct: 11  IHVIGGGLAGSEAAWQIAEAGVPVILHEMRGVRGTDAHKTESLAELVCSNSFRSDDATSN 70

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+ R AD        LN        G     DRE +  A+   I  
Sbjct: 71  AVGVLHAEMRLAGSLIMRCAD--------LN----QVPAGGALAVDREGFAEAVSAAIAD 118

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTGTF------LRGV 161
              + V++ E+ G       ++ I             IR  T       F      +   
Sbjct: 119 HPLITVLREEIRGLPPRDWDLAIIATGPLTAPDLAEAIRAETGADALAFFDAIAPIVHAD 178

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++       +      A + G    + + E     +
Sbjct: 179 TIDMDICWHQSRYDKVGPGGTGKDYINCPLTQEQYDAFVDALIAGDKAGFKEWEGTPYFD 238

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 239 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 267

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q +  R IPGL+     R G   
Sbjct: 268 -HNPSVKPYAVVQLRQDNALGTLYNMVGFQTKLKYGAQGEVFRMIPGLQNAEFARLGGLH 326

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L  +L  K   GL  AGQI G  GY E+A+ GL+AG  +A +      + 
Sbjct: 327 RNTYINSPTLLDHSLTLKSRPGLRFAGQITGCEGYVESASIGLLAGRFAAAERKGASPVL 386

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
              T ++ G ++D +T   ++      +     + S +P N +  L P            
Sbjct: 387 PPVTTAF-GALLDHITGGHIV------SDDEPGKRSFQPMNINFGLFPPLEPGALTRPEG 439

Query: 461 QKRFAKYIQEYNFLRSL 477
            KRF    +     +++
Sbjct: 440 AKRFRGKEKALAKKQAM 456


>gi|124026173|ref|YP_001015289.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. NATL1A]
 gi|205830316|sp|A2C3G4|TRMFO_PROM1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123961241|gb|ABM76024.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. NATL1A]
          Length = 467

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 165/491 (33%), Gaps = 51/491 (10%)

Query: 4   RSY-DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL---V 59
           + Y  V VIG G AG EAA   A  G    L   +         +     L   +    +
Sbjct: 2   KEYPSVTVIGAGLAGSEAAWQIASAGIKVTLFEMRPKKKSPAHHSSEFAELVCSNSFGAL 61

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               A   L   +     I     +    PA  G     DR  + L++  E+ S   + +
Sbjct: 62  SSDRAAGLLQEELRTLKSIVINKADKHSVPA--GGALAVDRSQFSLSITNELSSHPLITI 119

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+ E       + I         S +    +   TG       H       A  +    S
Sbjct: 120 IRDECPSLPKTQQITILATGPLTSELLAEDIKEFTGEK---ECHFFD---AASPIITGES 173

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
                +F    +D G          D   +     E  +         F ++ I   Q +
Sbjct: 174 IDFSTAFRASRYDKG----------DADYVNCPMNEDSY-------IKFHSELIKAEQAK 216

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE----------RN 289
                            I+  A    D   YGP     + D   R+G+          R 
Sbjct: 217 LKDFEKESAHFFEGCLPIEQLAKRGIDTMRYGPLKPIGLWDP--RWGDVNDKNIRRLKRA 274

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  E     +    G  T L    Q +  R IPGL K   IR G      Y+  P
Sbjct: 275 HAVVQLRQEDKAGQLWNLVGFQTNLKWGEQKRIFRMIPGLSKAEFIRFGVMHRNTYLESP 334

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           K + PTL+      LF AGQ+ GT GY  A A G +AG N+A  +  LD I    + + I
Sbjct: 335 KLIEPTLQFINRKTLFAAGQLTGTEGYAAAIAGGWLAGTNAALLAKGLDTITLPSS-TMI 393

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKY 467
           G + + +++          + R + + + +P  A+  L P +  ++    ER ++   + 
Sbjct: 394 GALTNFVSNSQ-------ASLRVKNKKNFQPMPANFGLLPELDNRVHNKRERYKEYRDRA 446

Query: 468 IQEYNFLRSLL 478
           + +   LR  L
Sbjct: 447 LGQIKKLRETL 457


>gi|160915176|ref|ZP_02077389.1| hypothetical protein EUBDOL_01184 [Eubacterium dolichum DSM 3991]
 gi|158432975|gb|EDP11264.1| hypothetical protein EUBDOL_01184 [Eubacterium dolichum DSM 3991]
          Length = 431

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 163/501 (32%), Gaps = 86/501 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIG 51
           M N+   V ++G G AG EA     K G    L         + H +   G + C+ ++ 
Sbjct: 1   MKNK---VTIVGAGLAGSEACWQLVKRGIPVRLVEMRPQKSSLAHHSELFGELVCSNSLR 57

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+   D L+ + ADA  +              G     DR  +   +
Sbjct: 58  SDSLLNAVGILKEEMRKFDSLIMKCADATRV------------PAGSALAVDRHSFSKMI 105

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   ++V+  E+        II             ++  LT+    + +      
Sbjct: 106 TDTLKSHPLVEVVHEEMKYIPDGPVII-------------ASGPLTSDALSQAIKDYTHA 152

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +      +   R   G  A ++          K+  D       
Sbjct: 153 DYFHFYDAAAPIVEKDSIDFDKAYIKSRYDKGEAAYINCP------MSKEEFDA------ 200

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    I     E        ET+       +  A        +GP     +E      G 
Sbjct: 201 FYEALIHAETAELHDF---EETYFEGCMPFEEMARRGEKTLLFGPMKPVGLEKND---GT 254

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
                + L  +     +    G  T L    Q + +  IPGLE V+I+R G      Y+ 
Sbjct: 255 LPYAVVQLRQDDAVASLYNIVGFQTHLKWGEQKRILSMIPGLENVSIVRYGVMHRNSYLC 314

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L PT +      LF AGQ+ G  GY E+AA GL+AG+N A       C+    T  
Sbjct: 315 APKVLRPTYQHCTRDDLFFAGQLCGVEGYVESAASGLLAGLNMANLIRGKACVELPST-C 373

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G M++ +T                     +P NA+  +  +            ++  K
Sbjct: 374 VMGSMVNYITHANPN--------------YFQPMNANFGIMQL-----------MEKVKK 408

Query: 467 YIQEYNFLRSLLKSLVLTSKN 487
             ++  F R  LK +  + + 
Sbjct: 409 KDRKEAFARQALKVIEESLEE 429


>gi|225019247|ref|ZP_03708439.1| hypothetical protein CLOSTMETH_03200 [Clostridium methylpentosum
           DSM 5476]
 gi|224947878|gb|EEG29087.1| hypothetical protein CLOSTMETH_03200 [Clostridium methylpentosum
           DSM 5476]
          Length = 444

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 163/487 (33%), Gaps = 72/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIG----GL 53
           +V V+G G AGCEAA   A+ G    L   K                 C+ ++     G 
Sbjct: 4   NVTVVGAGLAGCEAAWQLAQAGIPVRLCEMKPQKYSPAHSYRGFAELVCSNSLKASRIGS 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  L  R A    +              G     DRE +   +  +I S
Sbjct: 64  AAGMLKEEMRLLGSLTMRCACDCAV------------GAGGALAVDREKFSDLVTEQITS 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N++V+ GEV        II             +T  LT+  F   +  +   K  +  
Sbjct: 112 CPNIEVVSGEVDEIPEGYVII-------------ATGPLTSDAFAEKIFQLVGGKRLSFY 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   F   R   G     D   I     E+++        +F    I
Sbjct: 159 DAAAPIVTAESVDMTKAFYAARYGRG-----DADYINCPMNEEEY-------KAFYAALI 206

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                          T       ++  A    D   +GP     +       G+R    +
Sbjct: 207 AGETAPLHEFDKREFTVYEGCMPVEVMAKRGEDTIRFGPLKPIGLRHP--ETGQRYYAVL 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E     +    G  T L    Q +    IPGLE    +R G      +++ P+ L 
Sbjct: 265 QLRKENAAGSLYNLVGFQTNLKFGEQKRIFSMIPGLEHAEFVRYGVMHRNTFLDSPRLLD 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
                +K   +  AGQI G  GY E+AA G+ AG+  AR+ +    +    TDS +G + 
Sbjct: 325 SHFRLRKEPRIRFAGQITGVEGYIESAASGIYAGLTLARELSGQSELTLP-TDSMLGALS 383

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEY 471
             ++ + V               + +P   +   L P+G ++    + R +  A   +  
Sbjct: 384 HYISDETVE--------------NFQPMGCNMGILPPLGERIRN-KQLRYETVAN--RGL 426

Query: 472 NFLRSLL 478
              +  L
Sbjct: 427 ASFKQRL 433


>gi|7145094|gb|AAA24250.2| 21K protein [Escherichia coli]
 gi|223849|prf||1002215C protein 21kD
          Length = 196

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 118/190 (62%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7   FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GLM +  D AGIQFR+LN  KGPAVR  R QADR LYR A++  + +Q NL + Q  V 
Sbjct: 67  GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS  L   
Sbjct: 127 DLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRR 186

Query: 186 FMKFDFDTGR 195
             +     GR
Sbjct: 187 LRELPLRVGR 196


>gi|224541325|ref|ZP_03681864.1| hypothetical protein CATMIT_00485 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525762|gb|EEF94867.1| hypothetical protein CATMIT_00485 [Catenibacterium mitsuokai DSM
           15897]
          Length = 430

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/434 (21%), Positives = 152/434 (35%), Gaps = 41/434 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---D 63
           +V V+GGG AG EA     K G    L   +      +        L   + +R     +
Sbjct: 4   EVNVVGGGLAGVEATYQLIKEGIPVHLYEMRPVKKTDVHKTSDFAELVCSNSLRADGLKN 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  ++      PA  G     DRE +  A+   I +   + V + E
Sbjct: 64  AVGVLKQEMTMNDSMIIKMARDHAVPA--GGSLAVDREGFSRAVTEFIENHPLVTVHREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V        II+S  +  +++     ++      L G          A  +    S    
Sbjct: 122 VTRIPDGPTIIASGPLTSDAL--AKEIM-----DLMGNQDYFYFYDAAAPIVTKESIDFN 174

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            +F K  +D G          DG+ I    T+++F        +F    I    ++    
Sbjct: 175 KAFYKSRYDKG----------DGEYINCPMTKEEFD-------AFYDALINAEVVKPHDF 217

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
               E         +  A        +GP     +E    RF       + L  +     
Sbjct: 218 ---EEKFFEGCMPFEEIARRGKQTLLFGPMKPVGLEKDGQRF----EAVVQLRQDNAVGS 270

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q + I  IPGLE  +I+R G      Y N P  L PT + K    
Sbjct: 271 LYNIVGFQTHLKWGEQDRIIHMIPGLENASIVRYGIMHRNCYFNSPTYLNPTYQFKNRED 330

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQ+ G  GY E+A  G+VAG N  R     + + + R ++ +G +   +T      
Sbjct: 331 LFFAGQMTGVEGYVESAQSGIVAGKNMVRYLKGEELLTYPR-ETVMGSLAYYITHAS--- 386

Query: 423 PYRMFTSRAEYRIS 436
           P      +A + I 
Sbjct: 387 PSDFQPMKANFGIL 400


>gi|114707239|ref|ZP_01440137.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
 gi|114537435|gb|EAU40561.1| glucose-inhibited division protein A [Fulvimarina pelagi HTCC2506]
          Length = 473

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 153/457 (33%), Gaps = 44/457 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++   + ++GGG AG EAA   A  G    L   +            +  L   +  R
Sbjct: 1   MTDKP--IHIVGGGLAGSEAAWQIASRGVPVVLHEMRPVRGTDAHKTDGLAELVCSNSFR 58

Query: 61  ----EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               E +A+  +   +  A  +  R  +  + PA  G     DRE +  A+ R +     
Sbjct: 59  SDDAETNAVGVIHAEMRLAGSLIMRSADANQVPA--GGALAVDREGFSAAVTRALEEHPL 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + + +GE+ G   E    + +              LT      G+         A     
Sbjct: 117 ITIERGEIEGLPPEDWGDTIVAT----------GPLTAPALAEGIREATGQNALAFFDAI 166

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P     +  MK  +   R     P       I     ++ +  +R +      D+   +
Sbjct: 167 APIVHFDSVDMKTAWFQSRYDKVGPGGTGKDYINCPLDKETY--DRFVAALVEGDRTQFK 224

Query: 237 QIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQ 292
                       T        I+  A    +   +GP     +    D  V    +    
Sbjct: 225 DW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHDPEV----KPYAV 272

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    R IPGL+     R G      Y++ P+ L
Sbjct: 273 VQLRQDNALGTLYNMVGFQTKLRYGEQAAIFRMIPGLQNAEFARLGGLHRNTYLDSPRLL 332

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  K ++ L  AGQI G  GY E+AA GL+AG  +A +    +      T +  G +
Sbjct: 333 DATLRLKSLNRLRFAGQITGCEGYVESAAVGLMAGRFAAAERLGEEVSAPPATTAM-GAL 391

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +  +T   +             + S +P N +  L P
Sbjct: 392 LGHITGGHLAH------EEDGGKRSFQPMNVNFGLFP 422


>gi|328543826|ref|YP_004303935.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [polymorphum gilvum SL003B-26A1]
 gi|326413570|gb|ADZ70633.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Polymorphum gilvum SL003B-26A1]
          Length = 466

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/493 (19%), Positives = 161/493 (32%), Gaps = 43/493 (8%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA----LD 66
           IGGG AG EAA   A+ G    L   +            +  L   +  R  DA    + 
Sbjct: 2   IGGGLAGSEAAWQIARRGIPVVLHEMRPVRATDAHRTDGLAELVCSNSFRSDDADHNAVG 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +  A  +     +  + PA  G     DR+ +  A+ R +     +++ + E+AG
Sbjct: 62  LLHAELRRAGSLIMASGDANQVPA--GSALAVDRDGFSAAVTRALEGHPLIEIRREEIAG 119

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                     +              LT+    + ++        A     +P     +  
Sbjct: 120 LPPADWDSVVVAT----------GPLTSPALSQAILARTGEDSLAFFDAIAPIVHFDSID 169

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R     P       I     + Q+  E  I      DK   R  E       
Sbjct: 170 MDVAWFQSRYDKVGPGGTGKDYINCPLDKAQY--EAFIDALLAGDKTEFRDWE------- 220

Query: 247 LETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             T        I+  A    +   +GP     + +       +    + L  +     + 
Sbjct: 221 ANTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNA-HSPSVKPYAVVQLRQDNALGTLY 279

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T L    Q +  R IPGLE     R G      ++N PK L  TL  K  S L 
Sbjct: 280 NIVGFQTKLRYGAQAEIFRMIPGLEHAEFARLGGLHRNTFLNSPKLLDATLRLKAESRLR 339

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA G +AG+ + ++      +      + +G ++  +T   +    
Sbjct: 340 FAGQITGCEGYVESAAIGCLAGLFAVQERLGR-PLTPPPATTAMGALLAHITGGHIA--- 395

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFAKYIQEYNFLR 475
           R          S +P N +  L P          G +L    + R ++ A   +      
Sbjct: 396 RDHDGGGP--RSFQPMNVNFGLFPPVEAPERSTDGKRLRGADKARARKLALTARARADFD 453

Query: 476 SLLKSLVLTSKNL 488
           + + +L L   + 
Sbjct: 454 AWMTALALEPASA 466


>gi|293400523|ref|ZP_06644668.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305549|gb|EFE46793.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 430

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 169/484 (34%), Gaps = 73/484 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IG G AGCEA     K G    L+          H +     + C+ ++        
Sbjct: 4   VTIIGAGLAGCEACWQLIKRGIPVKLVEMRPLKSSDAHHSDQFAELVCSNSLRSDSLQNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + ADA  +              G     DR  +   + + +   
Sbjct: 64  VGILKEEMRHLDSLIMKAADAHRV------------PAGSALAVDRTSFSETITKILSEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ E+        II+S  +  +++ +    +     F             A  +
Sbjct: 112 PLVEVVREEITKIPEGPVIIASGPLTSDALSKAIQEMTHEDYF--------HFYDAAAPI 163

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S     +++K      R   G  A ++          K+  D       F    + 
Sbjct: 164 IEKESIDFTKAYVK-----SRYDKGEAAYINCP------MNKEEFDA------FYDALLH 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E        +T        +  A        +GP     +E      G      + 
Sbjct: 207 AETAELHDF---DKTFFEGCMPFEEMARRGEKTLLFGPMKPVGLEKPD---GSLPYAVVQ 260

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q + +  IPGLE V+I+R G      Y+  PK L P
Sbjct: 261 LRQDNAIASLYNVVGFQTHLKWGEQKRILSMIPGLEHVSIVRYGVMHRNSYLCAPKVLRP 320

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           T +      LF AGQ+ G  GY E+AA GL+AG+N A        +    T   IG M++
Sbjct: 321 TYQHITRDDLFFAGQLTGVEGYVESAASGLLAGLNMANLIRGKAVVTLPST-CVIGSMVN 379

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T            + A+Y    +P NA+  +  +  K+    +R++    + +   + 
Sbjct: 380 YITH-----------ASAKY---FQPMNANFGIMQLEAKVK-KKDRKEAFGKQALAVIDS 424

Query: 474 LRSL 477
            R L
Sbjct: 425 YREL 428


>gi|157413587|ref|YP_001484453.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9215]
 gi|205830317|sp|A8G5I6|TRMFO_PROM2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157388162|gb|ABV50867.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Prochlorococcus marinus str. MIT 9215]
          Length = 470

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 110/510 (21%), Positives = 175/510 (34%), Gaps = 83/510 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDKK--VIVIGAGLAGSEAAWQVANAGVPVKLVEMRPFKSTPAHHTGEFGELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L +E+     L+ + AD            K     G     DR  + +A+
Sbjct: 59  ALNPDRAAGLLQKELRIFKSLIIQTAD------------KFAVPAGGALAVDRSKFSMAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   +++ + E      ++ I    ++            LT+      +     +
Sbjct: 107 TEALSSHPLIEIERFEQLDLPRKEKIT---ILATG--------PLTSDELSYKIQAFTGI 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP     +   +  F   R   G PA L+               ++     
Sbjct: 156 DACHFFDAASPIIYGDSIDQEIVFKASRYDKGDPAYLNCPM------------DKNNYIH 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
           F    I   Q                   I+  A    D   +GP             + 
Sbjct: 204 FRNQLIEGEQANLKDFEKESANFFEACLPIEEIARRGVDTMRFGPLKSIGLWNPKWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRENRLKKRPYAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRMIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  P  L PTL+  K + LF AGQI GT GY  AAA GL+AGIN++  +     
Sbjct: 324 MHRNTFLESPNLLLPTLQFMKRNNLFAAGQITGTEGYAAAAAGGLLAGINASLLAKGKKT 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI-- 456
           + F + +S IG +I+ +++K                  +  +   N+  P+    G +  
Sbjct: 384 VSFPK-ESMIGSLINFISNKNQ----------------ILSNQKKNKFQPMPASFGLVPE 426

Query: 457 -----GERRQKRFAKYIQEYNFLRSLLKSL 481
                 ++R +  A   +    L      L
Sbjct: 427 LTKRIKDKRLRYKAYQERSTEALNDFKNKL 456


>gi|254469783|ref|ZP_05083188.1| tRNA:m(5)U-54 methyltransferase [Pseudovibrio sp. JE062]
 gi|211961618|gb|EEA96813.1| tRNA:m(5)U-54 methyltransferase [Pseudovibrio sp. JE062]
          Length = 458

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 167/483 (34%), Gaps = 46/483 (9%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDALD 66
           +GGG AG EAA   A+ G    L   + +          +  L   +  R    E +A+ 
Sbjct: 2   VGGGLAGSEAAWQIAEKGLKVVLHEMRPTRETDAHKTDGLAELVCSNSFRSDDAENNAVG 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +  A  +  +  +  K PA  G     DR+ +  A+Q  + + EN+++I+ EV  
Sbjct: 62  LLHAELRAAGSLIMKSADANKVPA--GGALAVDRDGFSEAVQAALEAHENVEIIREEVTE 119

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
             +    I  +++            LT+      ++        A     +P     +  
Sbjct: 120 IPSAD--IGQVILATG--------PLTSPALSEQILKATGEDSLAFFDAIAPIIHTESIN 169

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R     P       I     ++Q+  E  I      +K + ++ E       
Sbjct: 170 MDKAWYQSRYDKVGPGGTGKDYINCPMDKEQY--EAFIDALIGGEKTSFKEWE------- 220

Query: 247 LETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTDV 304
             T        I+  A    +   +GP     + +      + +    + L  +     +
Sbjct: 221 ENTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNA--HQPDIKAYAVVQLRQDNALGTL 278

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE     R G      ++N P+ L   +  K +  +
Sbjct: 279 YNMVGFQTKLKYGAQSEIFRMIPGLEDAQFARLGGLHRNTFLNSPRLLDEQMRLKALPHI 338

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+ A G + G+ +A ++   D I      +  G +I+ +T   +   
Sbjct: 339 RFAGQITGCEGYVESTAVGCMTGLFAAHQALGTD-IAPPPATTACGAIINHITGGHID-- 395

Query: 424 YRMFTSRAEYRISLRPDNADNRL---------TPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                       S +P N +  L          P G +L    + R K+     +  +  
Sbjct: 396 ----REDGSGPRSFQPMNINFGLLPPLDEMPKHPEGKRLRGKEKTRLKKQVMAKRGLDDF 451

Query: 475 RSL 477
           ++ 
Sbjct: 452 KAW 454


>gi|95929068|ref|ZP_01311813.1| gid protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134969|gb|EAT16623.1| gid protein [Desulfuromonas acetoxidans DSM 684]
          Length = 450

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 164/477 (34%), Gaps = 51/477 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALD 66
           +IGGG AGCEAA  AA+LG    L+  K         +  +  L   + +R     +A+ 
Sbjct: 15  IIGGGLAGCEAAWQAAELGIDVCLLEMKPIQFSPAHHSEGLAELVCSNSLRGTGMNNAVG 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +  A  +  +  +    PA  G     DRE +   +  +I +  ++ +++ EV  
Sbjct: 75  CLKEELRRANCLFMQAADATAVPA--GGALAVDREAFSDWVGNKIAAHSHITLMREEVTT 132

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +  +I             ++  LT+ T    +  I   +        +P  +  +  
Sbjct: 133 LPEQGPVII------------ASGPLTSPTLATQIAQITGEESLYFYDAIAPIITADSID 180

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               +   R   G     D   +     ++Q+  +  +      DK+     E  I    
Sbjct: 181 FSVAWRASRYDKG-----DADYVNCPMNKEQY--QAFVAELIAADKVPAHNFEKMIHFEG 233

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                 + E             ++GP     + D   R G+     I L  +  +     
Sbjct: 234 CMPIEEMAE-------RGEQTLAFGPMKPVGLPDP--RTGKEPYAVIQLRQDNRHATSYN 284

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  RTIPGLEK    R G      +IN P+ L   L+      L+ 
Sbjct: 285 IVGFQTKLTYPEQRRIFRTIPGLEKAEFERLGSVHRNTFINAPRCLNGRLQLTSDPRLYF 344

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G +AG+ +A        +      +  G ++  L          
Sbjct: 345 AGQITGVEGYVESAACGYLAGLIAASDLLG-KTLPLPAAVTACGALLGHLRDSDPDH--- 400

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                       +P N +  L P     G   +R  +R A   +        L+ L 
Sbjct: 401 -----------FQPQNVNYGLFPPLE--GRKMKRALRRLAMADRALEAWEQWLQQLK 444


>gi|27379838|ref|NP_771367.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium japonicum
           USDA 110]
 gi|33301129|sp|Q89L21|TRMFO_BRAJA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27352991|dbj|BAC49992.1| glucose inhibited division protein [Bradyrhizobium japonicum USDA
           110]
          Length = 475

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 158/448 (35%), Gaps = 38/448 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V VIG G AG EAA   AK G    L   +   +        +  L   +  R  DA   
Sbjct: 9   VHVIGAGLAGSEAAWQVAKAGVPVMLHEMRPDRMTEAHRTDGLAELVCSNSFRSDDAANN 68

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ +GE
Sbjct: 69  AVGLLHAEMRRLGSLIMRAADANQVPA--GGALAVDRDGFSAAVTKALNDHPLIEIARGE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG                ++I   T  LT+      +  +      A     +P     
Sbjct: 127 IAGLPPADW---------GNVIVA-TGPLTSAPLADAIRELTDENALAFFDAIAPIVHRE 176

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    T++Q+  E  +      +K   ++ E    
Sbjct: 177 SIDMSVAWFQSRYDKVGPGGNGADYINCPMTKEQY--EGFVAALIAGEKTEFKEWE---- 230

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 231 -TNTPYFD-GCLPIEVMAERGPETLRHGPMKPVGLTNPHDPT-TKAYAIVQLRQDNKLGT 287

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLEK    R G      ++N PK L   L  +    
Sbjct: 288 LYNIVGFQTKLKYGEQQRIFRTIPGLEKAEFARLGGLHRNTFLNSPKLLDGQLRLRAQPR 347

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT--SKGV 420
           L  AGQ+ G  GY E+A+ GL+AG+ +A  +   + +      + +G ++  +T      
Sbjct: 348 LRFAGQMTGCEGYVESASVGLIAGLYAAADARG-ETLASPPATTALGSLLGHITGGHIET 406

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +EP            S +P N +  L P
Sbjct: 407 IEP---------GTRSFQPMNINFGLFP 425


>gi|237734603|ref|ZP_04565084.1| tRNA (uracil-5-)-methyltransferase gid [Mollicutes bacterium D7]
 gi|229382423|gb|EEO32514.1| tRNA (uracil-5-)-methyltransferase gid [Coprobacillus sp. D7]
          Length = 434

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 152/462 (32%), Gaps = 53/462 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EA     K G    L   +   +     +     L   + +R     +A
Sbjct: 5   VNVIGAGLAGVEACHQLVKRGYKVRLYEMRPKKMTPAHHSGNFAELVCSNSLRADGTGNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  +     + PA  G     DR  +  A+   I S   ++VI  E 
Sbjct: 65  VGVLKAEMEMMDSLIIKYARKHQVPA--GGALAVDRNNFSQAITEYIQSHPLIEVIHEEA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     II             ++  LT+      +               +P  +  +
Sbjct: 123 KEFPAGYTII-------------ASGPLTSDALATAIKEKLGEDYFYFFDAAAPIIAKES 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G     D + I     E QF            + +  +        
Sbjct: 170 IDFAIAYYKSRYDKG-----DNEYINCPMNEAQF--NAFYDALVNAEVVKPKDF------ 216

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E         +  A        +GP     +       G R    + L  + +   +
Sbjct: 217 --EEKFFEGCMPFEEMARRGKQTLLFGPMKPVGLTAPD---GTRPYAVVQLRQDNVQASL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q + I+ IPGLE  + +R G      +I +PK L  T + K  S +
Sbjct: 272 YNIVGFQTHLTWPEQKRIIQMIPGLENASFVRYGVMHRNSFICSPKHLLKTYQLKNYSNI 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQI G  GY E+A  G+ AGIN  R     + + F   ++ +G + + +T+    + 
Sbjct: 332 FMAGQITGVEGYVESAQSGMAAGINMVRLLEDKEPLIFPE-NTVMGALANYITNASKED- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
                         +P  A+  + P    +    + R+  +A
Sbjct: 390 -------------FQPMKANFGILP-DFPIRIKKKERKAAYA 417


>gi|149184578|ref|ZP_01862896.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
 gi|148831898|gb|EDL50331.1| glucose-inhibited division protein A [Erythrobacter sp. SD-21]
          Length = 459

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 102/501 (20%), Positives = 176/501 (35%), Gaps = 69/501 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG 52
           + ++D+ +IGGG AG EAA   A+ G    L            H+T  +  + C+ +   
Sbjct: 4   DMTHDIHIIGGGLAGSEAAWQLARRGFKVRLSEMRGSGEMTPAHQTDGLAELVCSNSFRS 63

Query: 53  -----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  LD L+ R  +          V + PA  G     DR+++   +
Sbjct: 64  DDSDKNAVGLLHHEMRRLDSLVMRAGE----------VARVPA--GSAMAVDRDVFSAEV 111

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           QR +    N+ V++ +V         I             +T  LT  +    ++     
Sbjct: 112 QRTLDEHPNVTVVREQVDALPASGPTIV------------ATGPLTAQSLAESIVKSTGQ 159

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR-LDGKTIIWDKTEKQFADERLIPF 226
              A     +P     +  M   +   R    T A   DG  I    T+KQ+        
Sbjct: 160 DRLAFFDAIAPIIHRDSIDMSKCWIQSRWNKRTEASNEDGDYINCPMTKKQYL--AFHQG 217

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF- 285
               +K   R+ E      +          I+  A    +   YGP     +++      
Sbjct: 218 LMDGEKTEFREWEADTPYFD------GCMPIEVMAARGVETLRYGPMKGVGLDNPYDTSE 271

Query: 286 ----GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
               G      + L  +     +    G  T L    Q +  RTIPGLE     R G   
Sbjct: 272 EHPQGRWPYAVVQLRQDNKLGTLWNMVGFQTKLKYGAQIELFRTIPGLENAEFARLGGLH 331

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +IN P  L   L  +    +  AGQI G  GY E++A GL+AG+ +A +    D   
Sbjct: 332 RNTFINSPLVLDRQLRLRGGEHIRFAGQITGCEGYVESSAVGLMAGMMAASELAGHD-WS 390

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
                +  G ++  +T     +             + +P N +  L P   ++    +R+
Sbjct: 391 PPPRTTAFGALLSHITGDAEAD-------------TFQPMNVNFGLFPPLHEVK-KKQRK 436

Query: 461 QKRFAKYIQEYNFLRSLLKSL 481
           +   ++   E+    + L+++
Sbjct: 437 EAYTSRAKIEFGEWLATLEAI 457


>gi|225849723|ref|YP_002729957.1| tRNA (uracil-5-)-methyltransferase Gid [Persephonella marina EX-H1]
 gi|254789175|sp|C0QTE2|TRMFO_PERMH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|225645289|gb|ACO03475.1| tRNA:M(5)U-54 methyltransferase [Persephonella marina EX-H1]
          Length = 436

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 98/455 (21%), Positives = 151/455 (33%), Gaps = 69/455 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V VIG G AG EAA   A  G    L           H+T     + C+ ++GG     G
Sbjct: 4   VAVIGAGLAGSEAAFKIATSGFKVDLYEMRPVKTTPAHRTEGFAELVCSNSLGGKDITTG 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+  VA+                  G     DR  +   +   + + 
Sbjct: 64  SGLLKEEMRLLGSLIVSVAEE------------FSVPAGGALAVDRVKFSRRITEILENH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ VI+ EV       N I        S      +   TG+           +      
Sbjct: 112 PNIKVIRKEVTQLPEGYNFIIIATGPLTSEAFSKVIQRLTGS-----------EYLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P+           F   R   G     +   +  ++ E            F  + I 
Sbjct: 161 AIAPTVDADTVDFSKGFWGDRYGKGKGDYFNC-VLNEEEYEI-----------FYNELIN 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +Q+                  I+  A        +GP     + D   + G++    I 
Sbjct: 209 GKQVPLKDF--EKAVFFEGCLPIEEMARRGKQTLLFGPMKPVGLIDP--KTGKQPFAVIQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFP 353
           L  E     ++   G  T L    Q +  R IP L+    +R G      +I   + L P
Sbjct: 265 LRKENREGTLLSLVGFQTKLKYPEQKRIFRLIPALKDATFVRLGSIHRNTFIQSHRVLKP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ KK   +  AGQI G  GY  +AA G++AGIN  R     +      T + +G ++ 
Sbjct: 325 TLQLKKDPRILFAGQITGVEGYAASAATGILAGINVVRMLKGKEPTVPPET-TMLGGLVR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
            +T     EP          +  L+P N +  L P
Sbjct: 384 YIT-----EP----------KEELQPMNPNFSLLP 403


>gi|46580755|ref|YP_011563.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404580|sp|Q729K0|TRMFO_DESVH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|46450175|gb|AAS96823.1| gid protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 474

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 97/484 (20%), Positives = 164/484 (33%), Gaps = 55/484 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           +IG G AGCE A   A+ G    L   K +       NP +G L   + +R  D   G  
Sbjct: 13  IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDLGELVCSNSLRSDDIASGVG 72

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +   I     +  + PA  G     DR+L+   +   I ++  + + + EVA 
Sbjct: 73  LLKQEMRELGSIVMEAADATRVPA--GKALAVDRDLFARHITAVIEAEPGITLERREVAS 130

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG----RMGDSPSNSL 182
            +            D ++     VV+  G      +      +  G        +P  + 
Sbjct: 131 LD------------DPALASADVVVIAAGPLASAGLSDSLAAVVGGQLYFYDAIAPIIAA 178

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  +   F   R         +G  +       ++  +         +K+ +R  E  +
Sbjct: 179 ESIDLSIVFSGSRYGE---PGEEGDYLNCPMNRDEY--DAFYEALLAAEKVPSRDFEKEL 233

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                     + E              +GP       D   R G R    I L  E  N 
Sbjct: 234 HFEGCMPIEALAE-------RGPRTLVFGPFKPVGFTDP--RTGTRPYAIIQLRAENRNK 284

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
                 G  T L    Q +  R IPGL     +R G      Y+N P+ L   L  +   
Sbjct: 285 TAFNIVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRNTYVNAPRVLADDLSLRADK 344

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +FLAGQI G  GY E+AA G+  G+  A +    + +      + +G ++  L +    
Sbjct: 345 RVFLAGQITGVEGYVESAACGMWLGMVLAARIQGRE-LPTPPPQTALGALLMHLRTPV-- 401

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
                         + +P NA+  L P   +LG   ++R+++     +        L   
Sbjct: 402 -------------KNFQPSNANFGLMP---ELGLKVKKRERKPLYSARAREHFVRWLAEA 445

Query: 482 VLTS 485
            +T 
Sbjct: 446 GVTP 449


>gi|311234467|gb|ADP87321.1| gid protein [Desulfovibrio vulgaris RCH1]
          Length = 470

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 97/484 (20%), Positives = 164/484 (33%), Gaps = 55/484 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           +IG G AGCE A   A+ G    L   K +       NP +G L   + +R  D   G  
Sbjct: 9   IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDLGELVCSNSLRSDDIASGVG 68

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +   I     +  + PA  G     DR+L+   +   I ++  + + + EVA 
Sbjct: 69  LLKQEMRELGSIVMEAADATRVPA--GKALAVDRDLFARHITAVIEAEPGITLERREVAS 126

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG----RMGDSPSNSL 182
            +            D ++     VV+  G      +      +  G        +P  + 
Sbjct: 127 LD------------DPALASADVVVIAAGPLASAGLSDSLAAVVGGQLYFYDAIAPIIAA 174

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  +   F   R         +G  +       ++  +         +K+ +R  E  +
Sbjct: 175 ESIDLSIVFSGSRYGE---PGEEGDYLNCPMNRDEY--DAFYEALLAAEKVPSRDFEKEL 229

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                     + E              +GP       D   R G R    I L  E  N 
Sbjct: 230 HFEGCMPIEALAE-------RGPRTLVFGPFKPVGFTDP--RTGTRPYAIIQLRAENRNK 280

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
                 G  T L    Q +  R IPGL     +R G      Y+N P+ L   L  +   
Sbjct: 281 TAFNIVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRNTYVNAPRVLADDLSLRADK 340

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +FLAGQI G  GY E+AA G+  G+  A +    + +      + +G ++  L +    
Sbjct: 341 RVFLAGQITGVEGYVESAACGMWLGMVLAARIQGRE-LPTPPPQTALGALLMHLRTPV-- 397

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
                         + +P NA+  L P   +LG   ++R+++     +        L   
Sbjct: 398 -------------KNFQPSNANFGLMP---ELGLKVKKRERKPLYSARAREHFVRWLAEA 441

Query: 482 VLTS 485
            +T 
Sbjct: 442 GVTP 445


>gi|325294324|ref|YP_004280838.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064772|gb|ADY72779.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 436

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 174/486 (35%), Gaps = 71/486 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   A  G    L           HKTS    + C+  +GG      
Sbjct: 5   INVIGAGLAGVEAAYKVANKGHKVRLFEMRPKKTTPAHKTSLFAELVCSNTLGGKEVTTP 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L  E++ L+ L+   A            +K     G     DRE +   +  +I + 
Sbjct: 65  RGLLKAEMELLNSLIVEAA------------RKTEVPAGGALAVDREKFAEYITEKIENH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N++V++ EV     E   I             ++  LT+  F   + +    K      
Sbjct: 113 PNIEVVREEVTEIPKEGITIV------------ASGPLTSDKFSEYLRNYLGEKELHFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP            F   R   G    L         TE+++  ER        +K+ 
Sbjct: 161 AISPIVYADTIDYSKCFWGSRYGKGGDDYL-----NCPMTEEEY--ERFYTALMEAEKVP 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E             + E              +GP     + D   + G+R    + 
Sbjct: 214 LKDFEKACYFEGCMPIEEMAE-------RGKQTLLFGPLKPVGLIDP--KTGKRPFAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  E     ++   G  T L    Q +  R IPGLE     R G      +I +PK L  
Sbjct: 265 LRKENKEGTLLNLVGFQTKLKYPEQKRVFRLIPGLENAEFARFGSIHRNTFIKSPKLLLK 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ KK   +F AGQI G  GY E+AA G++AGIN+ + +   + + +    + IG ++ 
Sbjct: 325 TLQLKKNPKVFFAGQITGVEGYPESAATGIIAGINAVKLAEGKE-LVYPPETTMIGALLK 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T     +P       A + I L P+               I  +R++R     +    
Sbjct: 384 YIT---TADPKTFQPMNANFGILLPPEKK-------------IRGKRERRKYLAERALED 427

Query: 474 LRSLLK 479
           ++  L+
Sbjct: 428 MKKWLE 433


>gi|222085798|ref|YP_002544328.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
 gi|221723246|gb|ACM26402.1| glucose inhibited division protein A [Agrobacterium radiobacter
           K84]
          Length = 483

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 152/494 (30%), Gaps = 84/494 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + VIGGG AG EAA   A  G    L           HKT  +  + C+ +         
Sbjct: 10  IHVIGGGLAGSEAAWQIASAGVPVILHEMRGVRGTEAHKTDDLAELVCSNSFRSDDATSN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+     L+   AD                  G     DR+ +  A+ + I S
Sbjct: 70  AVGVIHAEMRLAGSLIMACADKH------------QVPAGGALAVDRDGFSAAVTQAIDS 117

Query: 114 QENLDVIQGEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVI------- 162
              + V++ E+ G   ++     I +  +         S +   TG              
Sbjct: 118 HPLITVVREEIEGLPPQEWDQAIIATGPLTAPGL---ASAIQAETGADALAFFDAIAPIV 174

Query: 163 ----HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
                   +     R            ++    D  +      A + G  + + + E   
Sbjct: 175 YRDSINMDICWYQSRYDKVGPGGTGKDYINCPMDQAQYNAFLDALIAGDAVGFKEWEGTP 234

Query: 219 ADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278
             +  +P   M ++                                 +   +GP     +
Sbjct: 235 YFDGCLPIEVMAER-------------------------------GRETLRHGPMKPMGL 263

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
            +       +    + L  +     +    G  T L    Q +  R IPGLE     R G
Sbjct: 264 TNAHNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRLIPGLENAEFARLG 322

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 YIN P  L  +L  K   GL  AGQI G  GY E+A+ GL+AG  +A +     
Sbjct: 323 GLHRNTYINSPTLLDRSLTLKSRPGLRFAGQITGCEGYVESASIGLLAGRFAAAERKGES 382

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
                 T + +G ++  +T   ++      +     + S +P N +  L P       + 
Sbjct: 383 PSVPPATTA-LGSLLSHITGGHIV------SDEEPGKRSFQPMNINFGLFPELEPGSIVK 435

Query: 458 ERRQKRFAKYIQEY 471
               KRF    +  
Sbjct: 436 PEGVKRFRGKDKTI 449


>gi|302035679|ref|YP_003796001.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Candidatus Nitrospira defluvii]
 gi|300603743|emb|CBK40075.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Candidatus Nitrospira defluvii]
          Length = 438

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 175/485 (36%), Gaps = 70/485 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           D+++IGGG AG EAA  AA  GA   L           HKT  +  + C+ ++G      
Sbjct: 4   DIVIIGGGLAGTEAAWQAANRGAKVTLYEMRPKEMTKAHKTGDLAELVCSNSLGSADPLN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L+ L+ R A+ A +              G     DRE +   + + +  
Sbjct: 64  APGILKTEMRRLNSLVIRAAEEARV------------PAGSALAVDREQFARVITQALEG 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ +++ EV     +   I             +T  LT+    + +  +   +     
Sbjct: 112 HPNIRIMREEVTEIPQDAVCII------------ATGPLTSEKLSKAISELTHERHLYFF 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              SP     +  M   +   R   G    L+           + A   L       +K+
Sbjct: 160 DAISPIIDAESINMDIVYRASRYGKGGADYLNCPL-------DEAAYNALYAAMMTAEKV 212

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             ++ E      +     ++ E              +GP     +E    + G R    +
Sbjct: 213 QPKEFEKIAYFESCIPIEVMAE-------RGRQTMQFGPLKPVGLEHP--KTGVRPYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E  +       G  T L    Q +  R IPGLE    +R G      +IN P+ L 
Sbjct: 264 QLRTENAHGTCYNMVGFQTKLTYPEQRRVFRLIPGLENAEFLRLGSLHRNTFINSPQLLR 323

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TL+ K    +F AGQ+ G  GY E+AA G +AGIN+AR       +     +S  G +I
Sbjct: 324 DTLQLKSRGTVFFAGQLVGVEGYTESAAMGGIAGINAAR-GLAAQPLVTPPPNSAHGCLI 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
             +T                     +P N +  L  P+ +K     ++R+    + ++++
Sbjct: 383 AHITKSDPAH--------------FQPMNTNFGLFPPVTVKTRDKDQKRRLIQQRAVEDF 428

Query: 472 NFLRS 476
           +   +
Sbjct: 429 DAWIA 433


>gi|170747991|ref|YP_001754251.1| gid protein [Methylobacterium radiotolerans JCM 2831]
 gi|205830309|sp|B1M5H7|TRMFO_METRJ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|170654513|gb|ACB23568.1| gid protein [Methylobacterium radiotolerans JCM 2831]
          Length = 475

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 166/486 (34%), Gaps = 49/486 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + ++GGG AG EAA   A+ G    +   +            +  L   +  R    E +
Sbjct: 5   IHIVGGGLAGSEAAWQVAEAGHRAVIHEMRPVRGTEAHRTDGLAELVCSNSFRSDDPEGN 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  R  +  + PA  G     DRE +  A+ R +    N+ +++GE
Sbjct: 65  AVGLLHQEMRSLGSLIMRAADTNQVPA--GGALAVDREGFSAAVTRALEQHPNVTLVRGE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G   E      +              LT      G+  +   +  A     +P     
Sbjct: 123 VEGLPPEAWGPCIVAT----------GPLTAPALAEGIRGLTGAESLAFFDAIAPIVHRD 172

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +    + +Q+  +  +      +KI  +Q      
Sbjct: 173 SIDMDVAWFQSRYDKPGPGGTGADYLNCPMSREQY--DTFVAALVAGEKIGFKQW----- 225

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEG 299
                T        ++  A    +   +GP     +    D +V    +    + L  + 
Sbjct: 226 ---EGTPYFDGCLPVEVMAERGPETLRHGPMKPVGLTNPRDPLV----KPCAIVQLRQDN 278

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETK 358
               +    G  T L    Q +  R IPGLE+    R G      Y++ P+ L  TL  +
Sbjct: 279 ALGTLYNMVGFQTKLTYSEQVRIFRMIPGLERAEFARLGGLHRNTYLDSPRLLDATLRLR 338

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
               L  AGQI G  GY E+AA GL+AG  +  ++         ++ + +G +I  +T  
Sbjct: 339 ARPSLRFAGQITGCEGYVESAAVGLMAGRFAVAEAAGRPLAPLPQSTA-LGALIAHITGG 397

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            +     M    A    S +P N +  L P           R  R     +     ++ L
Sbjct: 398 HL-----MADGEANAPRSFQPMNVNFGLFP--------PLERAPRNETGRRLRGPEKAAL 444

Query: 479 KSLVLT 484
           K   LT
Sbjct: 445 KKRALT 450


>gi|116072431|ref|ZP_01469698.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
 gi|116064953|gb|EAU70712.1| glucose-inhibited division protein A [Synechococcus sp. BL107]
          Length = 460

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 155/494 (31%), Gaps = 73/494 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AG EAA   A  G    L+          H +S    + C+ + G       
Sbjct: 11  VTVLGAGLAGTEAAWQVACAGIPVTLVEMRPVRRSPAHHSSDFAELVCSNSFGALSSDRA 70

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R AD   +              G     DR  Y  A+   +   
Sbjct: 71  AGLLQEELRRLGSLVIRTADEHAV------------PAGGALAVDRGRYSAALTEILDQH 118

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + E         +    V+            LT+ +    +             
Sbjct: 119 PLVTIERREQMDLPDVDAVT---VLATG--------PLTSESLANDLRGFTGRDDCHFFD 167

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F   R   G    ++                +    +F    + 
Sbjct: 168 AASPIVHGDSIDLNLAFRASRYDKGDADYINCPM------------NKAEFLAFREALLE 215

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E                 I+  A    D   YGP     + D          VR  
Sbjct: 216 AEQAELKDFDQESAKFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 275

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + ++ IPGL +   +R G      ++
Sbjct: 276 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLAQAEFVRFGVMHRNTFL 335

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ +    L  AGQI GT GY  A A G +AG N+AR    LD I    T 
Sbjct: 336 ESPQLLDPTLQFRTRRHLLAAGQITGTEGYAAAVAGGWLAGTNAARLVRGLDPIALPNT- 394

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRF 464
           +  G +   ++                     +P   +  L P +  ++     R     
Sbjct: 395 TMAGALTHFVSEAPT--------------KKFQPMPPNFGLLPDLPERIRDKRARYGAYR 440

Query: 465 AKYIQEYNFLRSLL 478
            + + +   +R+L+
Sbjct: 441 DRSLADLEPIRALI 454


>gi|317153468|ref|YP_004121516.1| gid protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943719|gb|ADU62770.1| gid protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 442

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 102/477 (21%), Positives = 171/477 (35%), Gaps = 65/477 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V++IGGG AGC+ A   A+ G S  L   K            +  L   +  R       
Sbjct: 4   VVIIGGGLAGCDCAWQLARAGVSVELYEMKPDKRSEAHTEDGLAELVCSNSFRATGPAAA 63

Query: 61  ------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
                 E+++L  L+   A A  +              G     DR L+   + R I   
Sbjct: 64  IGLLKDEMESLGSLIMEAAHATRV------------PAGGALAVDRALFSDFITRRIGEH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ E+A  +  +       +     +  +   L + +    +I +   +      
Sbjct: 112 PQITVIRREIADLDAPE-------LAGADAVVVAAGPLASQSLTASLIGLVGDERLYFYD 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      F   R K      L+       + E     +  +      DK+ 
Sbjct: 165 AIAPIVTRESIDFDKAFWGSRWKPEDDDYLNCPM---SEDEY----KGFVAALLAGDKVQ 217

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R  E        E H      ++  A       ++GP     + D   + GER    + 
Sbjct: 218 PRDFE-------QEVHFEGCLPVEAMAERGEMTLAFGPLKPVGLVDP--KTGERPYAVVQ 268

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E  +       G  T L    Q +  R IPGLE V  +R G      Y+N P  L  
Sbjct: 269 LRTENQDKTAFNLVGFQTKLKYPEQKRIFRMIPGLENVEFLRLGSIHRNTYVNAPDVLDA 328

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L+ K  SG FLAGQI+G  GY E+AA GL  G++ AR+ + +  +     ++ +G ++ 
Sbjct: 329 DLQLKARSGFFLAGQISGVEGYLESAACGLWVGLSLARRLSGVS-VVKPPVETALGALLG 387

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            L+++                   +P N +  L P G+      + R++ +    QE
Sbjct: 388 HLSTRPD--------------KRFQPSNVNFGLMP-GLTGKMKKKFRKEAYGVRAQE 429


>gi|167756894|ref|ZP_02429021.1| hypothetical protein CLORAM_02443 [Clostridium ramosum DSM 1402]
 gi|167703069|gb|EDS17648.1| hypothetical protein CLORAM_02443 [Clostridium ramosum DSM 1402]
          Length = 434

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 152/462 (32%), Gaps = 53/462 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V VIG G AG EA     K G    L   +   +     +     L   + +R     +A
Sbjct: 5   VNVIGAGLAGVEACHQLVKRGYKVRLYEMRPKKMTPAHHSGNFAELVCSNSLRADGTGNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +  +     + PA  G     DR  +  A+   I S   ++VI  E 
Sbjct: 65  VGVLKAEMEMMDSLIIKYARKHQVPA--GGSLAVDRNNFSQAITEYIQSHPLIEVIHEEA 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             F     II             ++  LT+      +               +P  +  +
Sbjct: 123 KEFPAGYTII-------------ASGPLTSDALATAIKEKLGEDYFYFFDAAAPIIAKES 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +   R   G     D + I     E QF            + +  +        
Sbjct: 170 IDFAIAYYKSRYDKG-----DNEYINCPMNEAQF--NAFYDALVNAEVVKPKDF------ 216

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E         +  A        +GP     +       G R    + L  + +   +
Sbjct: 217 --EEKFFEGCMPFEEMARRGKQTLLFGPMKPVGLTAPD---GTRPYAVVQLRQDNVQASL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGL 363
               G  T L    Q + I+ IPGLE  + +R G      +I +PK L  T + K  S +
Sbjct: 272 YNIVGFQTHLTWPEQKRIIQMIPGLENASFVRYGVMHRNSFICSPKHLLKTYQLKNYSNI 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F+AGQI G  GY E+A  G+ AGIN  R     + + F   ++ +G + + +T+    + 
Sbjct: 332 FMAGQITGVEGYVESAQSGMAAGINMVRLLEDKEPLIFPE-NTVMGALANYITNASKED- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
                         +P  A+  + P    +    + R+  +A
Sbjct: 390 -------------FQPMKANFGILP-DFPIRIKKKERKAAYA 417


>gi|222100824|ref|YP_002535392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Thermotoga neapolitana DSM 4359]
 gi|254789185|sp|B9KAP3|TRMFO_THENN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221573214|gb|ACM24026.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Thermotoga neapolitana DSM 4359]
          Length = 435

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 155/475 (32%), Gaps = 50/475 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG E      K G    L   +   +  +        L   +  +     +A
Sbjct: 3   VNVIGAGLAGSEVVYNLGKRGVKVRLYEMRPKKMTEVHKTGYFAELVCSNSFKSEEVTNA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +   V    + P   G     DR  +   +   I   EN+++++ EV
Sbjct: 63  EGLLKAEMKMMGSVVLEVAERTRVP--SGKALAVDRNAFARKVTEIIEDMENVEIVREEV 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             FN ++             I   T   T+   L  +  +            SP  S  +
Sbjct: 121 TSFNPDE----------GIWIVA-TGPATSEGLLSFLKELLGEDFLFFFDAVSPIVSFES 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G         I    T++++  E L       + I     +  +  
Sbjct: 170 IDMSRAFWGDRFGKGN------DYINCPLTQEEY--EELWKALVEAEVIEMEDFDRSLLF 221

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              +    I       A    D   YGP     + D   R G+     + L  E      
Sbjct: 222 ERCQPVEEI-------ARSGKDALRYGPLRPTGLVDP--RTGKEPYAVVQLRREDKEGKF 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + I+ IP L    I+R G      YIN P+ L P    KK   +
Sbjct: 273 YSLVGFQTRLKWGEQKKVIQKIPCLRNAEIVRYGVMHRNIYINSPRVLDPFFRLKKHPSV 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+AA G+    N  R    L  +     ++ +G +   +  K   + 
Sbjct: 333 FFAGQITGVEGYMESAASGIYVAYNVYRILRGLSPLRLPE-ETMMGALFSYIIEKVEGD- 390

Query: 424 YRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                        L+P  A+  L  P+ +++    ERR++   + ++        
Sbjct: 391 -------------LKPMYANFGLLPPLSVRVRNKFERRKRLAERAMKAMREFLEK 432


>gi|88808751|ref|ZP_01124261.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
 gi|88787739|gb|EAR18896.1| glucose-inhibited division protein A [Synechococcus sp. WH 7805]
          Length = 458

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 166/504 (32%), Gaps = 76/504 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A+ G    L+          H +S    + C+ + G       
Sbjct: 6   VVVIGAGLAGTEAAWQVAEAGIDVQLVEMRPIRRSPAHHSSECAELVCSNSFGALSSDRA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++ ++AD   +              G     DR  Y  ++ + +   
Sbjct: 66  AGLLQEELRRLGSVVIQMADRHAV------------PAGGALAVDRGRYSASLTQLLDQH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +   + E         +         S      +   TG   R   H       A  +
Sbjct: 114 PRVSFERKEQIALPASDQVTVLATGPLTSDALAEDLRRFTG---RADCHFFD---AASPI 167

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  +  +F    +D G          D   I      +Q+        +F    + 
Sbjct: 168 VEGDSVDMTKAFRASRYDKG----------DADYINCPMNREQY-------LAFRDALLE 210

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E         T       I+  A    D   YGP     + D          VR  
Sbjct: 211 AEQAELKDFDQANATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 270

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + ++ IPGLE+   +R G      ++
Sbjct: 271 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLEQAEFVRFGVMHRNTFL 330

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P  L  TL+ +    L  AGQI GT GY  A A G +AG N+AR       I   RT 
Sbjct: 331 EAPALLDATLQFRSRPTLLAAGQITGTEGYAAAVAGGWLAGTNAARLVQGEHPIDLPRT- 389

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + +G +   ++                     +P   +  L P   +   I ++R +  A
Sbjct: 390 TMVGALTHFISEAPS--------------GKFQPMPPNFGLLPELPER--IRDKRARYGA 433

Query: 466 KYIQEYNFLRSLLKSLVLTSKNLS 489
              +    L  LL +   T  +++
Sbjct: 434 YRDRALADL--LLATEKRTPLDVA 455


>gi|319408368|emb|CBI82021.1| gid-family protein [Bartonella schoenbuchensis R1]
          Length = 466

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 171/484 (35%), Gaps = 41/484 (8%)

Query: 2   INRSYDV--IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           ++  +++   +IGGG AG EA+   A+ G    L   +            +  L   +  
Sbjct: 1   MSNKFNIPIHIIGGGLAGSEASWQIAQSGIPVILHEMRPKRKSDAHKTDKLAELVCSNSF 60

Query: 60  REID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  D    A+  L   +  A  +  +  +  K PA  G     DR+ +   +   + +  
Sbjct: 61  RSDDSSTNAVGLLHAEMRLAKSLIMKAADANKVPA--GSALAVDRDGFSQTVTEALENHP 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + + + E+     E              I  +T  LT+    + +  I   +  +    
Sbjct: 119 LITIEREEIHNLP-ENW----------HNIIIATGPLTSPALAQTIQEITGTEALSFFDA 167

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P + +   +      +Q+  E  +      +KI  
Sbjct: 168 IAPIIYTDSINMDICWYQSRYDKIGPEKTEKDYLNCPLNREQY--ETFVQALKSAEKIEF 225

Query: 236 RQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           RQ          +T        I+  A    +   YGP     + +       +    + 
Sbjct: 226 RQF--------EKTPYFDGCLPIEVMAERGFETLRYGPMKPIGLTNAHNPTV-KPYAVVQ 276

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  RTIPGLEK    R G      Y+N P  L  
Sbjct: 277 LRQDNTLGTLYNMVGFQTKLKYGEQIRIFRTIPGLEKAEFARLGGLHRNTYLNSPIILDK 336

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +L  K+   L  AGQI G  GY E++A GL+AG  +  + N        +T ++ G +++
Sbjct: 337 SLRLKQKPQLRFAGQITGCEGYVESSAIGLLAGRFAVAEYNHTCPSLPPKTTAF-GALLN 395

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +T   +        ++   + S +P N +  L P  +      E+R     K + +   
Sbjct: 396 HITGGHI-------ATQETGKQSFQPMNINFGLFP-PVDCVHHSEKRLSSKEKKLAKKQA 447

Query: 474 LRSL 477
           + + 
Sbjct: 448 IITR 451


>gi|319404103|emb|CBI77693.1| gid-family protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 459

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 96/502 (19%), Positives = 173/502 (34%), Gaps = 67/502 (13%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M+N+S   I +IGGG AG EA+   A+LG    L   +            +  L   +  
Sbjct: 1   MLNKSKTPIHIIGGGLAGSEASWQIAQLGIPVVLHEMRPKRKSDAHKTDKLAELVCSNSF 60

Query: 60  REIDA----LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  DA    +  L   +  A  +  +  +  K PA  G     DR+ +   +   +    
Sbjct: 61  RSDDASKNAVGLLHAEMRLAKSLIMKAADSNKVPA--GGALAVDRDEFSKTVTETLEKHP 118

Query: 116 NLDVIQGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTG--TFLRGVI-------HI 164
            + + + E+     N    II++  +      +    +  T   +F   +          
Sbjct: 119 LITIQRKEIHEIPENWHNVIIATGPLTTPEFSQAIQAITGTEALSFFDAIAPIIYTESIN 178

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
             +     R            ++    D  + K    A + G+ + + + E     +  +
Sbjct: 179 MDICWYQSRYDKIGPEGTGKDYLNCPLDREQYKIFVEALISGEKVEFREFENISYFDGCL 238

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DK 281
           P   M ++                                 +   +GP     +      
Sbjct: 239 PIEVMAER-------------------------------GLETLRHGPMKPMGLTNTHHP 267

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
            +    +    + L  +     +    G  T L    Q +  R IPGLEK    R G   
Sbjct: 268 TI----KPYAIVQLRQDNKLGTLYNMVGFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLH 323

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              Y+N P  L  +L  K+   L  AGQI G  GY E+AA GL+AG  +A + N      
Sbjct: 324 RNTYLNSPILLDESLRLKQKPQLRFAGQITGCEGYIESAAIGLLAGRFAAAEYNHACPSL 383

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER- 459
             +T ++ G +++ +T   +        +  + + S +P N +  L P  +    + +R 
Sbjct: 384 PPKTTAF-GALLNHITGGHI-------ATIEKGKKSFQPMNINFGLFPPIISTNDLEKRL 435

Query: 460 -RQKRFAKYIQEYNFLRSLLKS 480
            ++K+ A   Q  N     LK+
Sbjct: 436 HKEKKQAIIEQALNDCIQWLKN 457


>gi|114778426|ref|ZP_01453271.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
 gi|114551270|gb|EAU53828.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans
           PV-1]
          Length = 448

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 156/459 (33%), Gaps = 64/459 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           + +IG G AG EAA   A+ G    L           HKT     + C+           
Sbjct: 9   ITIIGAGLAGSEAAWQLARRGIRVRLHEMRPTTMTPAHKTGNCAELVCSNTFRADHLENA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +D L+ R  D A I              G     DRE +   +   + ++
Sbjct: 69  VGLLHEEMRRMDSLIMRCGDEARI------------PAGTALAVDREQFSALVTAALTAE 116

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++++ GEV     E  ++             ++  LT+ T    + ++          
Sbjct: 117 PLIEIVPGEVTDIPPEGLVLI------------ASGPLTSDTLYDRIQNLTGEDRLCFFD 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  MK  +   R          G  +     E Q+  +  +      +K+ 
Sbjct: 165 AIAPVVDAESVNMKIAYWKNRYDKNVAEGEAGDYLNCPMNEAQY--KAFVAELVSAEKVA 222

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  E             + E          D   +GP     ++  +   GE+    + 
Sbjct: 223 FKGFEDIPFFEGCMPIEEMAE-------RGEDTPRFGPMKPVGLDHPV--SGEKAYAVVQ 273

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +     ++   G  T +    Q +    IPGLE+    R G      +I +P  L  
Sbjct: 274 LRRDNRMGSLLNMVGFQTKMTYGEQKRVFTMIPGLEQAEFFRLGSLHRNTFIKSPALLDN 333

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL  KK   +  AGQI G  GY E+A+ GL+AG   A  ++  +        ++ G ++ 
Sbjct: 334 TLRLKKEPRILFAGQITGVEGYVESASMGLMAGRFLAAMAHGEEPEAPPADTAH-GALLA 392

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
            ++   V +               +P N +  L P G K
Sbjct: 393 HISQTRVED--------------FQPMNINFGLLPPGKK 417


>gi|114566377|ref|YP_753531.1| gid protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122318545|sp|Q0AYP4|TRMFO_SYNWW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114337312|gb|ABI68160.1| gid protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 436

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/488 (24%), Positives = 186/488 (38%), Gaps = 71/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIG----GLG 54
           V VIGGG AGCEAA   A+ G    L   +            +G + C+ ++        
Sbjct: 4   VNVIGGGLAGCEAAYYLAQKGIRVRLWEMRPQKATAVHRTADLGELVCSNSLKSDQPNTA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L RE+  L  L+   A+ A +              G     DREL+   + + IL+ 
Sbjct: 64  QGLLKREMRILGSLLLSCAEKARV------------PAGSALAVDRELFAGLVSQAILAC 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            ++++ + EV    T +  I             ++  LT+      +  I   +      
Sbjct: 112 PSIELCREEVNRVPTGELSIV------------ASGPLTSEALAADLRRITGEENLFFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +PS S  +  M   F   R   G+   L+      D+ E +   E LI      D   
Sbjct: 160 AVAPSISADSLDMNKIFRASRYGKGSADYLNCP---LDREEYESFYENLINA----DIKA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
              I+  +         +I       A    D   YGP     +E  I    +R    + 
Sbjct: 213 GHSIDKSLFFNACMPAEVI-------ARRGKDALRYGPMRPVGLE--IPGSSKRAYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T +    Q +  R IPGLE+   +R G      YIN PK L+P
Sbjct: 264 LRQEDKAGTIYGMVGFQTRMRWGEQERIFRLIPGLEQAEFVRYGVMHRNTYINSPKLLWP 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +L+ KK   +F AGQI G  GY E+AA G++AGIN+AR       +      + IG ++D
Sbjct: 324 SLQCKKRPEIFFAGQITGVEGYMESAATGIIAGINAARWLQG-KALLTPHKATIIGALLD 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            ++S    +               +P NA+  L P       I ++ ++  A   +  N 
Sbjct: 383 FISSSSSQD--------------FQPMNANFGLLPP--MEPPIKDKAKRYLAYVERALNK 426

Query: 474 LRSLLKSL 481
           +    +SL
Sbjct: 427 MGEFSESL 434


>gi|239831772|ref|ZP_04680101.1| gid protein [Ochrobactrum intermedium LMG 3301]
 gi|239824039|gb|EEQ95607.1| gid protein [Ochrobactrum intermedium LMG 3301]
          Length = 495

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/497 (19%), Positives = 157/497 (31%), Gaps = 69/497 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V V+GGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 38  VHVVGGGLAGSEAAWQLAQAGVPVILHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 97

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 98  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 145

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +++ EV G    +   + +              LT  +    +         A  
Sbjct: 146 HPLITIVREEVTGLPPAEWGTTIVAT----------GPLTAPSLAEAIQAQTGADALAFF 195

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 196 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALVEGDKT 253

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 254 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 304

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 305 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 364

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  K    L  AGQ+ G  GY E++A GL+AG  +A +      +      +  G +
Sbjct: 365 DATLRLKSRETLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLGQ-TLTPPPGTTAFGAL 423

Query: 412 IDDLTSKGV---LEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQ 461
           +  +T   +    EP          + S +P N +  L P        G +L    +   
Sbjct: 424 LGHITGGHIVADDEP---------GKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIA 474

Query: 462 KRFAKYIQEYNFLRSLL 478
           K+ A   +     R  L
Sbjct: 475 KKRALSARALADCRQWL 491


>gi|87302334|ref|ZP_01085159.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
 gi|87283259|gb|EAQ75215.1| glucose-inhibited division protein A [Synechococcus sp. WH 5701]
          Length = 453

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/430 (22%), Positives = 148/430 (34%), Gaps = 58/430 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A+ G    L+          H ++    + C+ + G       
Sbjct: 2   VLVIGAGLAGTEAAWQIAQAGLPVRLVEMRPVRRSPAHHSAEFAELVCSNSFGALSSDRA 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   AD                  G     DR  +   + R + + 
Sbjct: 62  AGLLQEELRQLGSLVISTADGH------------SVPAGGALAVDRGRFSADLTRILETH 109

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + E      E   I+  V+            LT+ +    +             
Sbjct: 110 PLIQVERVEQLRLP-EPEEIT--VLATG--------PLTSDSLAEDLRRFTGRDDCHFFD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP  +  +  +   F   R   G     D   I      +Q+  ER        ++  
Sbjct: 159 AASPIVAGESIDLGVAFRASRYDKG-----DADYINCPMNREQY--ERFRQALLAAEQAE 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
            +  E         ++      I+  A    D   YGP     + D          VR  
Sbjct: 212 LKDFE-----QESASYFEGCLPIEELARRGDDTMRYGPLKPIGLWDPRWGDLHDRDVRRA 266

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + +R IPGLE    +R G      ++
Sbjct: 267 KRAYAVVQLRQEDRDGRLWNLVGFQTNLKWGEQKRVLRLIPGLENAEFVRFGVMHRNTFL 326

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ ++   L  AGQI GT GY  A A G +AG N+AR ++    I    T 
Sbjct: 327 EAPQLLDPTLQFRQRPTLLAAGQITGTEGYAAAVAGGWLAGTNAARLAHGRSPIALPPT- 385

Query: 406 SYIGVMIDDL 415
           + IG +   +
Sbjct: 386 TMIGALTHFI 395


>gi|115524909|ref|YP_781820.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisA53]
 gi|122295920|sp|Q07MJ4|TRMFO_RHOP5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|115518856|gb|ABJ06840.1| gid protein [Rhodopseudomonas palustris BisA53]
          Length = 476

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 156/446 (34%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           + VIGGG AG EAA   A+ G    L   +   +     + ++  L   +  R  DA   
Sbjct: 10  IHVIGGGLAGSEAAWQIAQAGIRVVLHEMRPIRMTEAHRSDSLAELVCSNSFRSDDAANN 69

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+ R +     +++ +GE
Sbjct: 70  AVGLLHAEMRRLNSLVMRAADANQVPA--GGALAVDRDGFAAAVTRALAEHPLIEIRRGE 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G        S++V+            LT+      +  +      +     +P     
Sbjct: 128 VDGLPPADW--SNVVISTG--------PLTSAPLAAAIQALTGEDSLSFFDAIAPIVHRD 177

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +    T +Q+  +  +      DK+  +  E    
Sbjct: 178 SIDMTKAWFQSRYDKVGPGGTGADYLNCPMTREQY--DGFVAALVAGDKVDFKDWEKDTP 235

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   YGP     + +       +    + L  +     
Sbjct: 236 YFD------GCLPIEVMAERGPETLRYGPMKPVGLTNPHNPTV-KPYGIVQLRQDNKLGT 288

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE  +  R G      ++N PK L   L  +    
Sbjct: 289 LYNMVGFQTKLKHGEQARIFRTIPGLENADFARLGGLHRNTFLNSPKLLDSQLRLRAEPR 348

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+A  GL+AG+ +A  +     +      + +G ++  +T   +  
Sbjct: 349 LRFAGQMTGCEGYVESAGIGLIAGLCAAADAVGR-ALTPPPPTTALGALLGHITGGHIE- 406

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 407 ------TIDAGPRSFQPMNINFGLFP 426


>gi|319405546|emb|CBI79165.1| gid-family protein [Bartonella sp. AR 15-3]
          Length = 460

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 172/501 (34%), Gaps = 64/501 (12%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M+N+    + +IGGG AG EA+   A+LG    L   +            +  L   +  
Sbjct: 1   MLNKLKTPIHIIGGGLAGSEASWQIAQLGIPVVLHEMRPKRKSDAHKTDKLAELVCSNSF 60

Query: 60  REIDA----LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  DA    +  L   +  A  +  +  +  K PA  G     DR  +   +   +    
Sbjct: 61  RSDDASKNAVGLLHAEMRLAKSLIMKAADSNKVPA--GGALAVDRNEFSKTITETLEKHP 118

Query: 116 NLDVIQGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTF-----LRGVIHIGKLK 168
            + + + E+     +    II++  +      +    +  T        L  +I+   + 
Sbjct: 119 FITIQRREIHEIPEDWNNVIIATGPLTSPKFSQAIQAITGTEALSFFDALAPIIYTESIN 178

Query: 169 IPAG----RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
           +       R            ++    +  + K    A + G+ + + + E     +  +
Sbjct: 179 MNICWYQSRYDKIGPEGTGKDYLNCPLNQEQYKIFVQALISGEKVEFREFENISYFDGCL 238

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           P   M ++                                 +   YGP     + +    
Sbjct: 239 PVEVMAER-------------------------------GLETLRYGPMKPMGLTN--TH 265

Query: 285 FGE-RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
             + +    I L  +     +    G  T L    Q +  R IPGLEK    R G     
Sbjct: 266 HPKIKPYAVIQLRQDNKLGTLYNMVGFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLHRN 325

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y+N P  L  +L  K+   L  AGQI G  GY E+AA GL+AG  +A + N        
Sbjct: 326 TYLNSPILLDESLRLKQKPQLRFAGQITGCEGYIESAAIGLLAGRFAAAEYNHACPSLPP 385

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE---R 459
           +T ++ G +++ +T   +        +    + S +P N +  L P  +    + +    
Sbjct: 386 KTTAF-GALLNHITGGHI-------VTNETGKRSFQPMNINFGLFPPIISTNPLEKSLPH 437

Query: 460 RQKRFAKYIQEYNFLRSLLKS 480
           ++K+ A   +  N     LK+
Sbjct: 438 KEKKQAIIERALNDCIQWLKN 458


>gi|332703455|ref|ZP_08423543.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553604|gb|EGJ50648.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 443

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 171/467 (36%), Gaps = 46/467 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           + +IGGG AGCE A   A+ G    L   K            +  L   + +R   E  A
Sbjct: 4   IAIIGGGLAGCECAWRLAQAGIPVRLFEMKPIRRSPAHQEDGLAELVCSNSLRSEDEASA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +  A  +   V    + PA  G     DR L+   M R+I S   ++V++ EV
Sbjct: 64  IGELKVEMRMAGSLVMEVAEATRVPA--GKALAVDRRLFSDYMTRKIESNPLIEVVRAEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              ++        ++ D   +  +   L + +    +      K        +P  +  +
Sbjct: 122 ESLDSP-------LLADADRVVVAAGPLVSDSLASSLAQALGDKGLYFYDAIAPIVTAES 174

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M+  F   R +       D   +    TE+++        +F+ + +    + C    
Sbjct: 175 VDMEHAFWGSRYRPE-----DDDYLNCPLTEEEY-------KAFVRELLAAETVPCREFE 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            ++  H      I+  A       ++GP     ++D   R G R    + L  E      
Sbjct: 223 EHM--HFEGCLPIEEMAARGEMTLAFGPMKPVGLDDP--RTGRRPYAVLQLRAENRERTT 278

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    IPGL     +R G      ++N P  L   LE K   G+
Sbjct: 279 FNLVGFQTKLKYPEQKRVFALIPGLRNAEYVRLGSIHRNTFVNAPVVLTDELELKARPGV 338

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            LAGQI G  GY E+AA GL  G+  A K+     + F   ++ +G ++  L +      
Sbjct: 339 HLAGQITGVEGYLESAACGLWVGMLLAAKARGQS-LGFPPRETALGALLSHLRTPS---- 393

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
                       + +P N    L P  +      ++R++ +A+  +E
Sbjct: 394 -----------KNFQPSNVQFGLAP-ALDKRAGRKKRKELYAERARE 428


>gi|85708693|ref|ZP_01039759.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
 gi|85690227|gb|EAQ30230.1| glucose-inhibited division protein A [Erythrobacter sp. NAP1]
          Length = 461

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 175/486 (36%), Gaps = 52/486 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVREID 63
           +YDV +IGGG AG EAA   A+ G    L   + +  +        +  L   +  R  D
Sbjct: 7   NYDVHIIGGGLAGSEAAWQLARRGVKVRLSEMRGSGEMTPAHQTDGLAELVCSNSFRSDD 66

Query: 64  ----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               A+  L   + +   I  R     + PA  G     DR+++   +++ +    N+++
Sbjct: 67  DTKNAVGLLHHEMRELDSIVMRAGEFARVPA--GSAMAVDRDVFSAEVEKTLSEHPNVEI 124

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++  V         I             +T  LT  +  + ++     +  A     +P 
Sbjct: 125 VRERVDTLPDAGLTIV------------ATGPLTAQSLAQSIVGATGEERLAFFDAIAPI 172

Query: 180 NSLFNSFMKFDFDTGRLKTGTPAR-LDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
               +  M   +   R    T A   DG  I    T++Q+            +K   ++ 
Sbjct: 173 VHRDSIDMSKCWIQSRWNKRTEASNEDGDYINCPMTKEQYL--AFHKGLVEGEKTEFKEW 230

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF-----GERNGHQI 293
           E      +          I+  A    +   YGP     +++          G      +
Sbjct: 231 EKDTPYFD------GCMPIEVMAARGVETLRYGPMKGVGLDNPYDTTEEHPQGRWPYAVV 284

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  RTIPGLE     R G      ++N P+ L 
Sbjct: 285 QLRQDNKLGTLWNMVGFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRNTFLNSPRVLD 344

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  +    +  AGQ+ G  GY E+AA GLV+G+ +A + +  D      + + +G ++
Sbjct: 345 RQLRLRAAPHIRFAGQVTGCEGYVESAAIGLVSGMMTAAELSGRDWRPLPPSTA-LGALL 403

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +T     +             + +P N +  L P   ++    +++Q++ A   +   
Sbjct: 404 SHITGDADAD-------------TFQPMNVNFGLFPPLHEV----KKKQRKEAYTSRAKV 446

Query: 473 FLRSLL 478
            LR  L
Sbjct: 447 DLREWL 452


>gi|312898772|ref|ZP_07758161.1| tRNA:M(5)U-54 methyltransferase [Megasphaera micronuciformis F0359]
 gi|310620203|gb|EFQ03774.1| tRNA:M(5)U-54 methyltransferase [Megasphaera micronuciformis F0359]
          Length = 437

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 173/492 (35%), Gaps = 89/492 (18%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIG----GLGK 55
           +VIG G +G EAA  AA+ G  T L           H T     + C+ +          
Sbjct: 6   LVIGAGLSGAEAAWQAAQRGIPTELAEMRPHKKSPAHHTDFFAELVCSNSFRAANVENAV 65

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E+  L  L+   ADA  +              G     DR  +   +  +I +  
Sbjct: 66  GLLKEEMRRLGSLIMEAADATRV------------PAGGALAVDRVPFSEYVTEKIKNHP 113

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + +   EV     E+  I             ++  LT+      +  +   +       
Sbjct: 114 LITITHEEVTEIPEERPCII------------ASGPLTSDGLSSAITRLTGEEYFHFHDA 161

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P  ++ +  M   +   R   G    L+     + +      DE    +  +T     
Sbjct: 162 AAPIVTVESLNMNKVYRAARYGKGGADYLNCP---FTE------DEYKAFWQALTTA--- 209

Query: 236 RQIECGITRTNLE--THRIIMENIKHSAIYSGDIKSYGPRYCPSIE----DKIVRFGERN 289
              EC       +  T       ++       D   YGP     +E    D +       
Sbjct: 210 ---ECAELHEFEKDDTVFEGCMPVEVMGARGIDTLRYGPMKPVGLELPGTDTV------P 260

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  +  +  +    G  T L    Q +    IPGLE+   +R G      YIN P
Sbjct: 261 YAVVQLRQDNGSATLYNIVGFQTHLKFPEQKRVFSMIPGLEEAEFVRYGVMHRNSYINSP 320

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L PTL+ +K   LF AGQ+ G  GY E+A+ GL+AGIN+A+   +  C+ F + ++ +
Sbjct: 321 ELLLPTLQYRKRDSLFFAGQLTGVEGYLESASMGLLAGINAAKLCKEEACVTFPK-ETAL 379

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKL--------GCIGER 459
           G +   +++                  + +P N +   ++P+G+K           + +R
Sbjct: 380 GALSHYISTGPND--------------NFQPMNVNFGIISPLGIKKRIKKREKNALLAQR 425

Query: 460 RQKRFAKYIQEY 471
             +      ++ 
Sbjct: 426 ALEAIEVMKEKI 437


>gi|15643497|ref|NP_228543.1| tRNA (uracil-5-)-methyltransferase Gid [Thermotoga maritima MSB8]
 gi|26006779|sp|Q9WZJ3|TRMFO_THEMA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|4981259|gb|AAD35815.1|AE001744_5 glucose-inhibited division protein [Thermotoga maritima MSB8]
          Length = 435

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 159/475 (33%), Gaps = 47/475 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E A    K G    L   +   +  +        L   + ++  D  + 
Sbjct: 3   VNVIGAGLAGSEVAYNLGKRGIRVRLFEMRPKKMTEVHKTGYFAELVCSNSLKSEDITNA 62

Query: 68  LMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +    L    K     G     DR ++   +   I   E++++I+ EV  
Sbjct: 63  EGLLKAEMRLMGSITLEAAEKARVPSGKALAVDRNIFAKEVTEVIERLESVEIIREEVTE 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           F+ E+  I  +               T+   L  +  +    +       SP  +  +  
Sbjct: 123 FDPEEG-IWVVAT----------GPATSDGLLPFLKKLLGDDLLFFFDAVSPIVTFESID 171

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M+  F   R   G         I    T++++  E         + I     +  +    
Sbjct: 172 MECAFWGDRFGKG------KDYINCPLTKEEY--EEFWKALVEAEVIEMEDFDRKLLFER 223

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +    I       A    D   YGP     + D   R G+     + L  E        
Sbjct: 224 CQPIEEI-------ARSGKDALRYGPLRPTGLVDP--RTGKEPYAVVQLRREDKEGRFYS 274

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q + +R IP L    I+R G      YIN PK L      KK   +F 
Sbjct: 275 LVGFQTRLKWSEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKHPNIFF 334

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G+    N  R    L  +     ++ +G +   +  K   +   
Sbjct: 335 AGQITGVEGYMESAASGIYVAYNVHRILKGLSPLKLPE-ETMMGALFSYIIEKVEGD--- 390

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
                      L+P  A+  L P  +K+  + ++ +KR     +    ++  L+ 
Sbjct: 391 -----------LKPMYANFGLLP-PLKVR-VKDKFEKRKKLAERAIETMKKFLEE 432


>gi|154248234|ref|YP_001419192.1| gid protein [Xanthobacter autotrophicus Py2]
 gi|205830348|sp|A7INE1|TRMFO_XANP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154162319|gb|ABS69535.1| gid protein [Xanthobacter autotrophicus Py2]
          Length = 471

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 154/454 (33%), Gaps = 36/454 (7%)

Query: 2   INRSYD-VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +S D V V+GGG AG EAA   A  G    L   +            +  L   +  R
Sbjct: 1   MPQSADPVHVVGGGLAGSEAAWQIATRGVPVVLHEMRPQRTTDAHLTDGLAELVCSNSFR 60

Query: 61  ----EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               E +A+  L   +  A  +     +  + PA  G     DR+ +  A+ + +     
Sbjct: 61  SDDPEGNAVGVLHAEMRQAGSLILTAADQNQVPA--GGALAVDRDGFSRAVTKALEDHPL 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +++ + E+      +     +++            LT+      V+ +      A     
Sbjct: 119 IEIRREELTTLPPAEWD--KVILATG--------PLTSPALAEAVLSLTGETALAFFDAI 168

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P     +  M   +   R     P       I     E Q+     +      +K   R
Sbjct: 169 APIVHFDSIDMGKAWFQSRYDKPGPGGTGADYINCPLDEAQYH--AFVDALIAGEKAPMR 226

Query: 237 QIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
             E        +T        I+  A    +   +GP     + +       +    + L
Sbjct: 227 DFE-------AKTPYFDGCLPIEVMAERGRETLRFGPMKPVGLTNPHNPTV-KAYAIVQL 278

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L    Q +  RTIPGLE     R G      Y+N P+ L  T
Sbjct: 279 RQDNKLGTLYNMVGFQTKLRHGEQARVFRTIPGLENAEFARLGGLHRNTYLNSPRLLDGT 338

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  K    L  AGQI G  GY E+AA GL+AG  +A +      +    T ++ G ++  
Sbjct: 339 LRLKADPRLRFAGQITGCEGYVESAAVGLMAGRFAAAERRGEALVPPPLTTAH-GALLAH 397

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +T   V          A    S +P N +  L P
Sbjct: 398 ITGGHVE------AEEAGAPRSFQPMNINFGLFP 425


>gi|167771634|ref|ZP_02443687.1| hypothetical protein ANACOL_03006 [Anaerotruncus colihominis DSM
           17241]
 gi|167666274|gb|EDS10404.1| hypothetical protein ANACOL_03006 [Anaerotruncus colihominis DSM
           17241]
          Length = 440

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 161/486 (33%), Gaps = 56/486 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AGCEAA   A  G    L   K         +     L   + ++    L  
Sbjct: 3   VHVIGAGLAGCEAAWALANQGIRVCLYEMKPQRFSPAHHSEQFAELVCSNSLK-ARRLGS 61

Query: 68  LMGRVADAAGI--QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             G + +   +     V   +      G     DR+ +   + + I +   ++V+ GEV 
Sbjct: 62  AAGMLKEEMRMLGSLTVACAEATSVAAGGALAVDRDAFSALVTKHIRAHALIEVVSGEVT 121

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               ++  +  +  +  D    R S +   T +F                   +P  +  
Sbjct: 122 DIPLDRLTVIATGPLTSDALAARISELCGGTLSFYDAA---------------APIVTYE 166

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  +   F   R   G    ++     ++K E +         +F     T         
Sbjct: 167 SLDLDRVFFAARYDRGDGDYINCP---FNKEEYE---------AFYEALRTAEPAPLHDF 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
               +        I+  A    D   YGP     + +   R G R    + L  E     
Sbjct: 215 DQAEKRVYEGCMPIEIMARRGPDTIRYGPLKPVGLRNP--RTGHRPWAVVQLRRENSAGT 272

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISG 362
           +    G  T L    Q +    IPGL     +R G      +I +P  L  T+  ++   
Sbjct: 273 LYNLVGFQTNLRFGEQKRVFSMIPGLAHAEFMRYGVMHRNTFIGSPWLLDETMRMREHDR 332

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQI G  GY E+A  G++ G   AR+    + +     D   G ++  ++     +
Sbjct: 333 IYFAGQITGVEGYMESAMSGILTGRQIARRLQGKEPLKLPL-DCMCGALLRYVSGPACAD 391

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                          +P  A+  L P       + ER + +  +Y+       + L+  +
Sbjct: 392 --------------FQPMGANMGLLP------PLDERMKDKQQRYLLIAQRGLAHLRQTL 431

Query: 483 LTSKNL 488
           + S+ +
Sbjct: 432 VDSQEV 437


>gi|148269340|ref|YP_001243800.1| tRNA (uracil-5-)-methyltransferase Gid [Thermotoga petrophila
           RKU-1]
 gi|281411963|ref|YP_003346042.1| gid protein [Thermotoga naphthophila RKU-10]
 gi|205830346|sp|A5IJ51|TRMFO_THEP1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147734884|gb|ABQ46224.1| gid protein [Thermotoga petrophila RKU-1]
 gi|281373066|gb|ADA66628.1| gid protein [Thermotoga naphthophila RKU-10]
          Length = 435

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 158/475 (33%), Gaps = 47/475 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E A    K G    L   +   +  +        L   + ++  D  + 
Sbjct: 3   VNVIGAGLAGSEVAYNLGKRGIRVRLFEMRPKKMTEVHKTGYFAELVCSNSLKSEDITNA 62

Query: 68  LMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +    L    K     G     DR ++   +   I S E+++VI+ EV  
Sbjct: 63  EGLLKAEMKLMGSITLEAAEKARVPSGKALAVDRNIFAKEVTEAIESLESVEVIREEVTE 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           F+ E+            +   +T   T+      + ++            SP  +  +  
Sbjct: 123 FDPEE-----------GLWVVATGPATSDGLFSFLRNLLGDDFLFFFDAVSPIVTFESID 171

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M+  F   R   G         I    T+ ++  E L       + I     +  +    
Sbjct: 172 MEHAFWGDRFGKG------KDYINCPLTDGEY--EELWKALVEAEVIEMEDFDRKLLFER 223

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +    I       A    D   YGP     + D   R G+     + L  E        
Sbjct: 224 CQPIEEI-------ARSGKDALRYGPLRPTGLVDP--RTGKEPYAVVQLRREDKEGRFYS 274

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q + +R IP L    I+R G      YIN PK L      KK   +F 
Sbjct: 275 LVGFQTRLKWNEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKQPNIFF 334

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G+    N  R    L  +     ++ +G +   +  K   +   
Sbjct: 335 AGQITGVEGYMESAASGIYVAYNVYRILKGLSPLKLPE-ETMMGALFSYIIEKVEGD--- 390

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
                      L+P  A+  L P  +K   + ++  KR     +    +R  L+ 
Sbjct: 391 -----------LKPMYANFGLLP-PLKTR-VKDKFGKRKKLAERAIEAMRKFLEE 432


>gi|78779510|ref|YP_397622.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9312]
 gi|123554076|sp|Q31AA9|TRMFO_PROM9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78713009|gb|ABB50186.1| gid protein [Prochlorococcus marinus str. MIT 9312]
          Length = 470

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/499 (23%), Positives = 176/499 (35%), Gaps = 77/499 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI++   VIVIG G AG EAA   A  G    L+          H T   G + C+ + G
Sbjct: 1   MIDKE--VIVIGAGLAGSEAAWQIANAGVPVKLVEMRPYKSTPAHHTGEFGELVCSNSFG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L +E+   + L+ + AD            K     G     DR  +  A+
Sbjct: 59  AISADRAAGLLQKELRIFNSLIVQTAD------------KFAVPAGGALAVDRSKFSNAL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   +++ + E     +++NI    ++            LT+      +     +
Sbjct: 107 TETLSNHPLINIKRIEQLDLPSKENIT---ILATG--------PLTSDDLAYKIQDFTGI 155

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    SP     +   +  F   R   G PA L+      DK E      +LI   
Sbjct: 156 DDCHFFDAASPIIYGDSIDHEIVFKASRYDKGDPAYLNCPM---DKYEYTNFRNQLI--- 209

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIE 279
              ++   +  E                 I+  A    D   YGP             + 
Sbjct: 210 -EGEQANLKDFE-----KESANFFEACLPIEEIARRGIDTMRYGPLKSIGLWNPKWGDLF 263

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D+  R  +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G 
Sbjct: 264 DRDNRLKKRPHAIVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRIIPGLEKAEFVRFGV 323

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++  PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +     
Sbjct: 324 MHRNTFLESPKLLLPTLQFMKRESLFAAGQITGTEGYAAAAAGGLLAGINASLIAKGEIA 383

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           + F   +S IG +++ ++                 R  +      N+  PI    G + E
Sbjct: 384 VTFPD-ESMIGSLMNFIS----------------NRNKIMSSQKKNKFQPIPASFGLVPE 426

Query: 459 RRQKRFAKYIQEYNFLRSL 477
              KR       Y   +  
Sbjct: 427 LT-KRIKDKRSRYIAYQQR 444


>gi|124022709|ref|YP_001017016.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9303]
 gi|205830318|sp|A2C8E1|TRMFO_PROM3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123962995|gb|ABM77751.1| NAD binding site:Glucose inhibited division protein A family
           protein [Prochlorococcus marinus str. MIT 9303]
          Length = 467

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/492 (20%), Positives = 164/492 (33%), Gaps = 68/492 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A+ G    LI  +               + C+ + G       
Sbjct: 7   VLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKQSPAHYSSEFAELVCSNSFGALSSDRA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++ R AD+  +              G     +R  +  ++ +E+ + 
Sbjct: 67  AGLLKEELRRLGSIVIRTADSHAV------------PAGGALAVNRASFSASLTKELSAH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + E      E  I         S +    +   TG   R   H       A  +
Sbjct: 115 PLITIERHEQEHLPGEGQITVLATGPLTSELLAENLRTFTG---RSECHFFD---AASPI 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  L        F   R   G     D   +     + Q+        +F    + 
Sbjct: 169 IEGESIDLT-----LAFRASRYDKG-----DADYMNCPMDKGQY-------LAFREALLN 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E                 I+  A    D   YGP     + D          VR  
Sbjct: 212 AEQAELKEFDKESAKFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDLNDRDVRRS 271

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E     +    G  T L    Q + ++ IPGL +   +R G      ++
Sbjct: 272 KRAYAVVQLRKEDHEGRLWNLVGFQTNLKWSEQKRVLKMIPGLHQAEFVRFGVMHRNTFL 331

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+  K S L  AGQI GT GY  A A G +AG N+AR +  L+ I    T 
Sbjct: 332 EAPQLLEPTLQFSKRSNLLAAGQITGTEGYTAAVAGGWLAGSNAARLAMGLNTITLPST- 390

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRF 464
           + IG +   ++               + +   +P  A+  L P +  ++    ER     
Sbjct: 391 TMIGALTHFVSDSDCF---------RDRKGEFQPMPANFGLLPELAERIHAKRERYGAYR 441

Query: 465 AKYIQEYNFLRS 476
            + +      + 
Sbjct: 442 DRALTMLEEAQQ 453


>gi|77918020|ref|YP_355835.1| tRNA (uracil-5-)-methyltransferase Gid [Pelobacter carbinolicus DSM
           2380]
 gi|123574961|sp|Q3A7H9|TRMFO_PELCD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77544103|gb|ABA87665.1| cell division control protein GidA [Pelobacter carbinolicus DSM
           2380]
          Length = 459

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 158/476 (33%), Gaps = 56/476 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALD 66
           +IG G AGCEAA  AA LG    L   K ++      +  +  L   + +R     +A+ 
Sbjct: 13  IIGAGLAGCEAAWQAAALGVQVTLHEMKPTSFSPAHQSADLAELVCSNSLRGAGMNNAVG 72

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +   A +  +  +    PA  G     DR+ +   +   I     + + + E   
Sbjct: 73  CLKEELRRCATLFMQAADATAVPA--GGALAVDRDAFSRYITEHIEQHPLITLQRNEQCS 130

Query: 127 FNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              E  +I  S  +  D      + +  +   +    I           + ++ S     
Sbjct: 131 VPPEGTVIIASGPLTSDALAPHLAQLTGSRHLYFYDAIA---------PIIEADSIDFSI 181

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++        R   G    ++       + E        +      DK+  +  E  I  
Sbjct: 182 AWK-----ASRYGRGGDDYINCPM---SRDEYMT----FVEALKTADKVAGKDFEKVIHF 229

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A       ++GP     + D   R G+     + L  + L+  +
Sbjct: 230 EGCMPIE-------EMARRGDMTLAFGPMKPVGLPDP--RTGKDPFAVVQLRQDNLHATL 280

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  RTIPGL+     R G      +IN P+ L   L       +
Sbjct: 281 FNMVGFQTKLTYPEQRRIFRTIPGLQDARFARLGSMHRNTFINAPRCLDQHLRLTSDPRM 340

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+AA G +AG+ +A +           T   +G ++  L+     + 
Sbjct: 341 FFAGQITGVEGYVESAACGFLAGLFAAGQLTDHAVPLPPATTG-LGALLGHLSHSSPDD- 398

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                         +P N +  L P   G K     ERR     + +++    R  
Sbjct: 399 -------------FQPMNVNYGLFPPLEGRK-RKRSERRLAMAERALRDLEPWRQR 440


>gi|85716179|ref|ZP_01047154.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
 gi|85697012|gb|EAQ34895.1| glucose-inhibited division protein A [Nitrobacter sp. Nb-311A]
          Length = 477

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 150/446 (33%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V +IG G AG EAA   A  G    L   +   +        +  L   +  R  DA   
Sbjct: 11  VHIIGAGLAGSEAAWQVAGRGVRVILHEMRPHRMTEAHRTSGLAELVCSNSFRSDDASNN 70

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+   +     +++ + E
Sbjct: 71  AVGLLHAEMRRLESLIMRCADTHQVPA--GGALAVDRDGFSAAVTEALEDHPLIEIDRAE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G        S++++            LT+      +  +      A     +P     
Sbjct: 129 IDGLPPADW--SNVIVATG--------PLTSAPLAAAIRALTDESALAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    TE Q+     +      +K+  +  E    
Sbjct: 179 SIDMSKAWFQSRYDKAGPGGSGADYINCPLTETQYH--AFVDALLEGEKVDFKDWETDTP 236

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             N          I+  A    +   YGP     + +       +    + L  +     
Sbjct: 237 YFN------GCLPIEVMAERGRETLRYGPMKPVGLTNPHDPT-TKPYAVVQLRQDNKLGT 289

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    
Sbjct: 290 LYNIVGFQTKLKHSAQTRIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDNRLRLRAEPR 349

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+AA GL+AG+ +A  +         +T + +G ++  +T   +  
Sbjct: 350 LRFAGQMTGCEGYVESAAIGLIAGLYAAADARTHTLEVPPQTTA-LGALLGHITGGHIE- 407

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 408 ------TIDAGPRSFQPMNINFGLFP 427


>gi|289547856|ref|YP_003472844.1| gid protein [Thermocrinis albus DSM 14484]
 gi|289181473|gb|ADC88717.1| gid protein [Thermocrinis albus DSM 14484]
          Length = 440

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 170/487 (34%), Gaps = 71/487 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V+VIGGG AG EAA   A+ G    L           H T  +  + C+   G      G
Sbjct: 4   VVVIGGGLAGSEAAYRLAEEGFQVILYEMRPQRSTPAHSTDRLAELVCSNTFGSTELTTG 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R A++                 G     DREL+  A+   I + 
Sbjct: 64  AGLLKAEMRLLGSLVLRCAESY------------SVPAGTALAVDRELFSSAVTEIIQNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI+ EV     ++ ++             +T  LT+      +  +          
Sbjct: 112 PRIRVIREEVKKVPRDEVVVV------------ATGPLTSQDLAEDIKELVGFDYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +      F   R   G     +        TE+++         F  + + 
Sbjct: 160 AIAPIVEADSVDFTKGFWGSRYGKGG----EEDYFNCVLTEEEY-------RVFYQELLK 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +++           +      I+  A        +GP     + D   R G+     + 
Sbjct: 209 AQKVPLKDF--EKAVYFEGCMPIEALAERGYKTLLFGPMKPVGLVDP--RTGKEPFAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFP 353
           L  E     ++   G  T +  + Q + +R IP L     +R G      +I   + L P
Sbjct: 265 LRKENKEGTLLSLVGFQTRMTYQEQKRVLRLIPCLRNAVFVRLGSMHRNTFIQSNRVLTP 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  +K   +F AGQI G  GY  +AA G++AGIN+ R     D +     D+ +G ++ 
Sbjct: 325 FLNMRKYPNIFFAGQITGVEGYVASAATGILAGINAGRFLKGED-LVVPPEDTMLGALVR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +TSK                  L+P +    L P   +   + +++ KR     +    
Sbjct: 384 YITSKE---------------GQLQPMSPVMGLLPPLQE--KVKDKKLKRELMARRALTS 426

Query: 474 LRSLLKS 480
           ++  ++ 
Sbjct: 427 MQRWIEE 433


>gi|78356467|ref|YP_387916.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|123552688|sp|Q312C5|TRMFO_DESDG RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78218872|gb|ABB38221.1| gid protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 458

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 167/473 (35%), Gaps = 45/473 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           ++GGG AGCE A   A+ G +  L   K  +      +P +G L   + +R  +   G  
Sbjct: 21  IVGGGLAGCECARKLARAGIAVTLFEMKPHSFSPAHSSPELGELVCSNSLRSDEPEAGVG 80

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +     +   V    + PA  G     DR L+  +M   + ++  + +I+ E+  
Sbjct: 81  VLKQEMRALGSLVMEVAEATRVPA--GKALAVDRGLFAASMTAAMEAEPGITLIRREITS 138

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            +          +Q    +  +   + + +  R +               +P  S  +  
Sbjct: 139 LDDP-------ALQGFDAVVIAAGPVASESLSRSLADAVGATHLYFYDAIAPIISADSVN 191

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M+  F   R +      L+      ++ E     E L+      +K   +  E  +    
Sbjct: 192 MEKAFWGSRYRPEDTDYLNCPM---NREEYFAFREALV----EGEKAATKDFEKELHFEG 244

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                 + E             ++GP     ++D   R G R    + L  E LN  +  
Sbjct: 245 CMPIEALAE-------RGEMTLAFGPFKPVGLDDP--RTGRRPFAVVQLRTENLNKTMFN 295

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  R IPGLE    +R G      Y+N P+ L      K    +FL
Sbjct: 296 LVGCQTKLKYGEQDRIFRMIPGLEDAEFVRYGSVHRNTYVNAPQVLNGDQSLKNRPDVFL 355

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G+  G+  A + +  + I     +  +G +   L +        
Sbjct: 356 AGQITGVEGYVESAANGMWLGMMLAARKHG-ENIPQPPVECALGALAAHLRTPV------ 408

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                       +P N +  LTP   +     +R+     +  + +    +LL
Sbjct: 409 ---------KKFQPSNINFGLTPELNQRARKKDRKALYAERARENFTQWYALL 452


>gi|258404544|ref|YP_003197286.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfohalobium retbaense
           DSM 5692]
 gi|257796771|gb|ACV67708.1| gid protein [Desulfohalobium retbaense DSM 5692]
          Length = 449

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 155/478 (32%), Gaps = 48/478 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG AG EAA   A       L   K            +  L   + +R  D    
Sbjct: 10  VAVIGGGLAGSEAAWALAHRDIEVTLFEMKPERFSPAHTESGLAELVCSNSLRSDDTTTA 69

Query: 68  LMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           +     +  +     +   +K     G     DR  +  A+   + +   + + + E+  
Sbjct: 70  VGQLKREMESAGSLIMDAARKTRVPAGKALAVDRHAFSAAVTSALEAHPRIGLRRQEIRS 129

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                       +     +  +   L + T    ++     +        +P  +  +  
Sbjct: 130 LTDP-------ALSGFDAVVVAAGPLASETLAADLVQRIGGEDLYFYDAIAPIVNTDSVD 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   F   R         +   +     E  +   R        DK+  R+ E  +    
Sbjct: 183 MDVAFWASRYNPE-----EKDYLNCPMDEATYY--RFRQALLDGDKVPAREFEKSVHFEG 235

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                 + E             +YGP     +ED   R G++    + L PE     +  
Sbjct: 236 CLPVETLAE-------RGELALAYGPLKPVGLEDP--RTGKQAFAVVQLRPENAAKTMCN 286

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  R IPGLE+   +R G      ++N P+ L P LE + + G++L
Sbjct: 287 LVGFQTKLTYPEQKRVFRMIPGLEQAEFVRMGSIHRNTFVNAPRVLLPHLELRDMPGVYL 346

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G   G     + +  + +     ++ +G ++  L++        
Sbjct: 347 AGQITGVEGYVESAASGFWLGKFLGGRLHG-EAVDLPPVETAMGALLGHLSTP------- 398

Query: 426 MFTSRAEYRISLRPDNADNRLTP-------IGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                       +P N +  L P          +     ER  + +  +++       
Sbjct: 399 --------NKHFQPMNVNFGLMPPLGVRAKKARRKELYAERADRAWQHWLEGQTTEEQ 448


>gi|91977243|ref|YP_569902.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           BisB5]
 gi|123762693|sp|Q136I8|TRMFO_RHOPS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|91683699|gb|ABE40001.1| gid protein [Rhodopseudomonas palustris BisB5]
          Length = 477

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 153/446 (34%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           V +IG G AG EAA   A+ G    L   +   +        +  L   +  R  D    
Sbjct: 11  VHIIGAGLAGSEAAWQVARAGIRVVLHEMRPDRMTQAHKTDGLAELVCSNSFRSDDAANN 70

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ + E
Sbjct: 71  AVGLLHAEMRKLGSLVMRAADANQVPA--GGALAVDRDGFSAAVTKALAEHPLIEIRREE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G   E            ++I   T  LT+      +  +      A     +P     
Sbjct: 129 IGGLPPEDW---------GNVIIA-TGPLTSAPLAEAIRALTDESALAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +    T +Q+  +  +      +K+  +  E    
Sbjct: 179 SIDMSVAWFQSRYDKAGPGGSGADYLNCPMTREQY--DGFVDALIEGEKVDFKDWE---- 232

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           R            I+  A    +   +GP     + +       ++   + L  +     
Sbjct: 233 RDTPYFD--GCLPIEVMAERGRETLRHGPMKPVGLTNPHNPLV-KSYAIVQLRQDNKLGT 289

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      ++N PK L P L  +    
Sbjct: 290 LFNMVGFQTKLNYGAQQRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDPQLRLRAAPR 349

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+A  GLVAG+ +A  +     +      + +G ++  +T   +  
Sbjct: 350 LRFAGQMTGCEGYVESAGIGLVAGLCAAADAIGQ-TLAAPPPTTALGALLGHITGGHIE- 407

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 408 ------TIDAGPRSFQPMNINFGLFP 427


>gi|319407117|emb|CBI80754.1| gid-family protein [Bartonella sp. 1-1C]
          Length = 459

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 176/491 (35%), Gaps = 45/491 (9%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M+N+    + +IGGG AG EA+   A+LG    L   +            +  L   +  
Sbjct: 1   MLNKLKTPIHIIGGGLAGSEASWQIAQLGIPVVLHEMRPKRKSDAHKTDKLAELVCSNSF 60

Query: 60  REIDA----LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R  DA    +  L   +  A  +  +  +  K PA  G     DR+ +   +   +    
Sbjct: 61  RSDDASKNAVGLLHAEMRLAKSLIMKAADSNKVPA--GGALAVDRDEFSKTVTETLEKHP 118

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            + + + E+     E     ++++            LTT  F + +  I   +  +    
Sbjct: 119 LITIQRKEIHEIP-ENW--HNVIIATG--------PLTTPEFSQAIQAITGTEALSFFDA 167

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P       +     ++Q+  +  +      +K+  
Sbjct: 168 IAPIIYTESINMDICWYQSRYDKIGPEGTGKDYLNCPLNQEQY--KIFVEALISGEKVEF 225

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQ 292
           R+ E            ++ E          +   +GP     +       +    +    
Sbjct: 226 REFENISYFDGCLPIEVMAE-------RGLETLRHGPMKPMGLTNTHHPTI----KPYAI 274

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q +  R IPGLEK    R G      Y+N P  L
Sbjct: 275 VQLRQDNKLGTLYNMVGFQTKLKYSEQTRIFRMIPGLEKAAFARLGGLHRNTYLNSPILL 334

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             +L  K+   L  AGQI G  GY E+AA GL+AG  +A + N        +T ++ G +
Sbjct: 335 DESLRLKQKPQLRFAGQITGCEGYIESAAIGLLAGRFAAAEYNHACPSLPPKTTAF-GAL 393

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER--RQKRFAKYIQ 469
           ++ +T   +        +  + + S +P N +  L P  +    + +R  ++K+ A   Q
Sbjct: 394 LNHITGGHI-------ATIEKGKKSFQPMNINFGLFPPIISTNDLEKRSHKEKKQAIIEQ 446

Query: 470 EYNFLRSLLKS 480
             N     LK+
Sbjct: 447 ALNDCIQWLKN 457


>gi|120601959|ref|YP_966359.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris DP4]
 gi|205830332|sp|A1VBW6|TRMFO_DESVV RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|120562188|gb|ABM27932.1| gid protein [Desulfovibrio vulgaris DP4]
          Length = 482

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/480 (19%), Positives = 166/480 (34%), Gaps = 47/480 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           +IG G AGCE A   A+ G    L   K +       NP +G L   + +R  D   G  
Sbjct: 9   IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDLGELVCSNSLRSDDIASGVG 68

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +   I     +  + PA  G     DR+L+   +   I ++  + + + EVA 
Sbjct: 69  LLKQEMRELGSIVMEAADATRVPA--GKALAVDRDLFARHITAVIEAEPGITLERREVAS 126

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            +      + +V+     +  + +  +    + G ++             +P  +  +  
Sbjct: 127 LDDPALASADVVVVAAGPLASAGLSDSLAAMVGGQLYFYDAI--------APIIAAESID 178

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           +   F   R         +G  +       ++  +         +K+ +R  E  +    
Sbjct: 179 LSIAFSGSRYGE---PGEEGDYLNCPMNRDEY--DAFYEALLAAEKVPSRDFEKELHFEG 233

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                 + E              +GP       D   R G R    I L  E  N     
Sbjct: 234 CMPIEALAE-------RGPRTLVFGPFKPVGFTDP--RTGTRPYAIIQLRAENRNKTAFN 284

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  R IPGL     +R G      Y+N P+ L   L  +    +FL
Sbjct: 285 IVGCQTKLKYAEQERVFRMIPGLAGAEFVRHGSVHRNTYVNAPRVLADDLSLRADKRVFL 344

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA G+  G+  A +    + +      + +G ++  L +        
Sbjct: 345 AGQITGVEGYVESAACGMWLGMVLAARIQGRE-LPTPPPQTALGALLMHLRTPV------ 397

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
                     + +P NA+  L P   +LG   ++R+++     +        L    +T 
Sbjct: 398 ---------KNFQPSNANFGLMP---ELGLKVKKRERKPLYSARAREHFVRWLAEAGVTP 445


>gi|289449591|ref|YP_003475176.1| tRNA:M(5)U-54 methyltransferase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184138|gb|ADC90563.1| tRNA:M(5)U-54 methyltransferase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 460

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 155/480 (32%), Gaps = 49/480 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           + V+G G AG EAA   A  G    L   K               L   + +R     +A
Sbjct: 2   INVVGAGLAGSEAALQIAACGVPVNLYEMKPKYKSPAHKMDLFAELVCSNSLRSNMINNA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +              + PA  G     DR L+   +  +I+S   + V    +
Sbjct: 62  VGLLKYELLSLGSYLLEATLHNEVPA--GGALAVDRNLFAEEVTAKIMSNPLITVHHELI 119

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                            N +   +T  LT G     +      +        +P  S  +
Sbjct: 120 DDIPA------------NGIWLIATGPLTQGKLFASMADFFGEEHLHFFDAAAPIISKDS 167

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G    L+               +      F     T  + E     
Sbjct: 168 IDTSIAFPQSRYNKGGDDYLNCPM------------DENEYKQFYAALKTAERAEVHDF- 214

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            + E        I+  A    D   +GP     ++D   R G      + L  + +  ++
Sbjct: 215 -DREIVFEGCMPIETMASRGEDTMRFGPLKPVGLKDP--RTGREPYACVQLRQDDIRGEM 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L +  Q +    IPGL K    R G      +IN PK L PT  T+K   L
Sbjct: 272 YNIVGFQTRLKQGEQRRVFGLIPGLSKAIFYRYGVMHRNTFINSPKHLNPTYATRKRHDL 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+ A G+VA IN+ R    L  + F +  + IG M + ++   V   
Sbjct: 332 FFAGQMTGVEGYVESIASGMVAAINAVRYFYNLPELVFPK-QTVIGAMANYISDPEVKH- 389

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                         +P NA+  L P         +R      + +Q    L + L  L +
Sbjct: 390 -------------FQPMNANFGLLPKLEYNTGKKDRPYHLARRSLQLITTLSTELNQLRV 436


>gi|258514509|ref|YP_003190731.1| gid protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778214|gb|ACV62108.1| gid protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 439

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 166/463 (35%), Gaps = 55/463 (11%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGRVADAAGIQFRV 82
           K G +  L   +           A   L   + +R     +A+  L   +     +  + 
Sbjct: 24  KRGVTVDLYEMRPEKNTPAHHTGAFAELVCSNSLRAASIENAVGLLKEEMRRMNSLIMKC 83

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII--SSIVMQ 140
            +    PA  G     DR  +  A+   + +   + VI+ EV     +  I+  +  +  
Sbjct: 84  ADSHSVPA--GGALAVDRHNFARAVTEVLENHPMVTVIREEVKEIPGDGIIVLATGPLTS 141

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D+      ++   TG            +        +P  SL +      F + R   G 
Sbjct: 142 DHM---AESIKALTGQ-----------EYLYFYDAVAPIVSLDSVDQSRVFRSSRYDKG- 186

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
               +   I    TE+++  E         ++   ++ E  I         +        
Sbjct: 187 ----EADYINCPMTEQEY--EAFWLELASAERAPRKEFEKEINFEGCMPVEV-------L 233

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A    +   +G      + D   R G+R    + L  +     +    G  T L  + Q 
Sbjct: 234 AKRGRETLLFGTMKPVGLTDP--RTGKRPYAVVQLRQDNAEGTLYNLVGFQTHLKWDEQR 291

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +    IPGLE+ + +R G      YIN P  L PTLE K    LF AGQ+ G  GY E+A
Sbjct: 292 RVFSMIPGLEQADFVRMGVMHRNTYINSPALLLPTLECKIRPQLFFAGQMTGVEGYVESA 351

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           A GL+AGIN++R + +   + F    ++ G + + +T              A  + + +P
Sbjct: 352 AAGLLAGINASRLACEKAPLVFPAETAH-GSLFNYIT--------------AAGKGNFQP 396

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
            N    L P   +   + +++ +      +  + L +  +S+V
Sbjct: 397 MNVTFGLIPPLQER--VRDKKTRNRMLAERALSALDAWQESIV 437


>gi|85374098|ref|YP_458160.1| tRNA (uracil-5-)-methyltransferase Gid [Erythrobacter litoralis
           HTCC2594]
 gi|122544460|sp|Q2NAC8|TRMFO_ERYLH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|84787181|gb|ABC63363.1| putative glucose-inhibited division protein (gid) [Erythrobacter
           litoralis HTCC2594]
          Length = 455

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 171/487 (35%), Gaps = 70/487 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG-- 52
           S+DV +IGGG AG EAA   A+ G    L            H+T  +  + C+ +     
Sbjct: 2   SHDVHIIGGGLAGSEAAWQLARRGVKVRLSEMRGSGEMTHAHQTDGLAELVCSNSFRSDD 61

Query: 53  ---LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L  E+ ALD L+ R  + A                G     DR+++   +Q+
Sbjct: 62  DTKNAVGLLHYEMRALDSLVMRAGEVA------------QVPAGSAMAVDRDVFSAEVQK 109

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            + +  N++V++  V         I             ST  LT  +    ++     + 
Sbjct: 110 TLEAHPNIEVVRERVDALPEAGLTIV------------STGPLTAQSLAESIVKATGQER 157

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR-LDGKTIIWDKTEKQFADERLIPFSF 228
            A     +P     +  M   +   R    T A   DG  I    T++Q+          
Sbjct: 158 LAFFDAIAPIVHRDSIDMSKCWIQSRWNKRTEASNEDGDYINCPMTKEQYL--AFHQGLI 215

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF--- 285
             +K   R+ E      +          I+  A    +   YGP     +++        
Sbjct: 216 DGEKTEFREWEKDTPYFD------GCMPIEIMAARGVETLRYGPMKGVGLDNPYDTSEEH 269

Query: 286 --GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
             G      + L  +     +    G  T L    Q +  RTIPGLE     R G     
Sbjct: 270 PQGRWPYAVVQLRQDNKLGTLWNMVGFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRN 329

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            ++N P  L   L  K    +  AGQ+ G  GY E+AA GL+AG+ +A++    D     
Sbjct: 330 TFLNSPMVLDRQLRLKGAEHIRFAGQVTGCEGYVESAAVGLMAGMMTAKELAG-DVWQGP 388

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
              + +G ++  +T     E Y             +P N +  L P   ++    ++R++
Sbjct: 389 PRTTALGALLSHITGDAEAETY-------------QPMNINFGLFPPLHEV--KKKQRKE 433

Query: 463 RFAKYIQ 469
            +    +
Sbjct: 434 AYTTRAK 440


>gi|254423011|ref|ZP_05036729.1| tRNA:m(5)U-54 methyltransferase [Synechococcus sp. PCC 7335]
 gi|196190500|gb|EDX85464.1| tRNA:m(5)U-54 methyltransferase [Synechococcus sp. PCC 7335]
          Length = 462

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 166/518 (32%), Gaps = 83/518 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           ++    + VIGGG AG E A   A+ G    L           H +  +  + C+ + G 
Sbjct: 1   MSDQQPIHVIGGGLAGTETAWQIARAGVPVVLHEMRPVKKSPAHHSEHLAELVCSNSFGA 60

Query: 53  LG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           +G     G L  E+  L  ++   AD   +              G     DR ++   + 
Sbjct: 61  MGTDRASGMLHEELRRLGSIVIGKADEHAV------------PAGGALAVDRGVFGQDLT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             + S   +++ + EV     E   +    +            LT+ +    +       
Sbjct: 109 AVLASHPLIELRREEVLRIPEEGVTV----LTTG--------PLTSESLSEDLERFAGQA 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             +     SP     +      F   R   G  A L+               ++   F+F
Sbjct: 157 YMSFFDAASPIVVGESINRDVAFMASRYDRGEAAYLNCPM------------DKAQYFAF 204

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE--------D 280
                T  Q E                 I+  A    D   YGP     +         D
Sbjct: 205 YHQLCTAEQAELKDFERETAKFFEACLPIEEIARRGEDTMRYGPLKPVGLFNTQKYGAFD 264

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
                  +    + L  E     +    G  T L    Q +  R +PGLE    +R G  
Sbjct: 265 APENKVHKPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFRMVPGLENAEFVRMGVM 324

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               +IN P+ L  +L+ K    L  AGQ+ GT GY  A A G +AG N+AR +     +
Sbjct: 325 HRNTFINSPELLNSSLQFKSRPNLLAAGQLVGTEGYTAAIAGGWLAGTNAARIALGKPPL 384

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
               T + +G ++D ++S    EP                        P+   +G I   
Sbjct: 385 TLPIT-TMLGALVDFISS---AEP--------------------KHFQPMPPNMGIIPAL 420

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQ 497
             KR     + Y   R    + + T  + ++ S+   +
Sbjct: 421 P-KRVRNKRERYGQYRDRAFADLQTWADENNLSLVLPK 457


>gi|291544311|emb|CBL17420.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus sp. 18P13]
          Length = 442

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 145/470 (30%), Gaps = 50/470 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---REIDALD 66
           VIG G AGCEAA   A+ G S AL   K               L   + +   R   A  
Sbjct: 4   VIGAGLAGCEAAWQIAQAGLSVALYDMKPKKHTPAHHADTFAELVCSNSLKASRLDSAPG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             M +          V   K      G     +R  +   +  +I S  N+ + + EV  
Sbjct: 64  --MLKAEMERLGSLLVPCAKATAVEAGGALAVERHAFSRMVTEKIRSHPNIMICEEEVER 121

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
               K     +++            LT  T  R +  I   ++ +     +P  +  +  
Sbjct: 122 IPEGK-----VILATG--------PLTADTLAREIALICGEQL-SFYDAAAPIVTRESLD 167

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R   G    ++               E+    +F    I             
Sbjct: 168 ESRIFYASRYGRGDADYINCPM------------EKPEYEAFYEALIGAESAPLKEFDKA 215

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                     I+  A    D   +GP     + D     G R    + L  E     +  
Sbjct: 216 AFRVYEGCMPIEVLAKRGADTMRFGPLKPVGLTDP--HTGRRPYAVVQLRKENREGTLYN 273

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +    IPGL     +R G      ++N P+ L  T   +    L+ 
Sbjct: 274 LVGFQTNLKFGEQKRVFSMIPGLAHAEFMRYGVMHRNSFLNSPRLLTDTYCMRTNPDLYF 333

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+A  GLVAG+N  R       +   R ++ +G +   ++         
Sbjct: 334 AGQITGVEGYMESAGSGLVAGLNMVRAVQGKPPLHLPR-ETMLGALAAHVSD-------- 384

Query: 426 MFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                  Y    +P  A+   L  +  ++     +      + +Q    L
Sbjct: 385 ------SYNEKYQPMGANMGILPELPERIRDKKAKYMALAQRGMQALEAL 428


>gi|170287998|ref|YP_001738236.1| gid protein [Thermotoga sp. RQ2]
 gi|205830347|sp|B1L7X2|TRMFO_THESQ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|170175501|gb|ACB08553.1| gid protein [Thermotoga sp. RQ2]
          Length = 435

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 157/480 (32%), Gaps = 57/480 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E      K G    L   +   +  +        L   + ++  D  + 
Sbjct: 3   VNVIGAGLAGSEVTYNLGKRGIRVRLFEMRPKKMTEVHKTGYFAELVCSNSLKSEDITNA 62

Query: 68  LMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +    L    K     G     DR ++   +   + S E++++I+ EV  
Sbjct: 63  EGLLKAEMRLMGSITLEAAEKARVPSGKALAVDRNIFAKEVTEAVESLESVEIIREEVTE 122

Query: 127 FNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRMGDSPSNS 181
           F+ E+ I    +     D  +     ++     F    +   +    I   R        
Sbjct: 123 FDPEEGIWVVATGPATSDGLLPFLKKLLGDDFLFFFDAVSPIVTFESIDMERAFWGDRFG 182

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
               ++         +    A ++ + I  +  +++   ER  P                
Sbjct: 183 KGKDYINCPLTKEEYEEFWKALVEAEVIEMEDFDRKLLFERCQP---------------- 226

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
                          I+  A    D   YGP     + D   R G+     I L  E   
Sbjct: 227 ---------------IEEIARSGKDALRYGPLRPTGLVDP--RTGKEPYAVIQLRREDKE 269

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
                  G  T L    Q + +R IP L    I+R G      YIN PK L      KK 
Sbjct: 270 GRFYSLVGFQTRLKWSEQKRVLRKIPCLRNAEIVRYGVMHRNVYINSPKLLDIFFRLKKH 329

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +F AGQI G  GY E+AA G+    N  R    L  +     ++ +G +   +  K  
Sbjct: 330 PNIFFAGQITGVEGYMESAASGIYVAYNVHRILKGLSPLKLPE-ETMMGALFSYIIEKVE 388

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
            +              L+P  A+  L P  +K+  + ++ +KR     +    ++  L+ 
Sbjct: 389 GD--------------LKPMYANFGLLP-PLKVR-VKDKFEKRKKLAERAIETMKKFLEE 432


>gi|78184998|ref|YP_377433.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CC9902]
 gi|123581324|sp|Q3AX63|TRMFO_SYNS9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|78169292|gb|ABB26389.1| Gid protein [Synechococcus sp. CC9902]
          Length = 460

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 155/494 (31%), Gaps = 73/494 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AG EAA   A  G    L+          H +S    + C+ + G       
Sbjct: 11  VTVLGAGLAGTEAAWQVACAGIPVTLVEMRPVRRSPAHHSSDFAELVCSNSFGALSSDRA 70

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ R AD   +              G     DR  Y  A+   +   
Sbjct: 71  AGLLQEELRRLGSLVIRTADDHAV------------PAGGALAVDRGRYSAALTEILDQH 118

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + + + E         +    V+            LT+ +    +             
Sbjct: 119 PLVTIERREQMDLPEVDAVT---VLATG--------PLTSESLANDLRGFTGRDDCHFFD 167

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F   R   G    ++                +    +F    + 
Sbjct: 168 AASPIVHGDSIDLNLAFRASRYDKGDADYINCPM------------NKAEFLAFREALLE 215

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E                 I+  A    D   YGP     + D          VR  
Sbjct: 216 AEQAELKDFDQESAKFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 275

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + ++ IPGL +   +R G      ++
Sbjct: 276 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQRRVLQMIPGLAQAEFVRFGVMHRNTFL 335

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             P+ L PTL+ +    L  AGQI GT GY  A A G +AG N+AR    LD I    T 
Sbjct: 336 ESPQLLDPTLQFRTRRHLLAAGQITGTEGYAAAVAGGWLAGTNAARLVRGLDPIALPNT- 394

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRF 464
           +  G +   ++                     +P   +  L P +  ++     R     
Sbjct: 395 TMAGALTHFVSEAPT--------------KKFQPMPPNFGLLPDLPERIRDKRARYGAYR 440

Query: 465 AKYIQEYNFLRSLL 478
            + + +   +R+L+
Sbjct: 441 DRSLADLEPIRALI 454


>gi|147677582|ref|YP_001211797.1| tRNA (uracil-5-)-methyltransferase Gid [Pelotomaculum
           thermopropionicum SI]
 gi|189040808|sp|A5D2W5|TRMFO_PELTS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146273679|dbj|BAF59428.1| NAD(FAD)-utilizing enzyme possibly [Pelotomaculum thermopropionicum
           SI]
          Length = 437

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 93/459 (20%), Positives = 157/459 (34%), Gaps = 52/459 (11%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGRVADAAGIQFRV 82
           + G    L   +   +     +     L   + +R     +A+  L   +     +    
Sbjct: 24  RRGIKVKLYEMRPEKLTPAHRSGYFAELVCSNSLRAAALENAVGLLKEEMRHLDSLVMAC 83

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
            +V   PA  G     DR+L+   +   I     +++ + EV      + +I        
Sbjct: 84  ADVTSVPA--GGALAVDRDLFARCVTERIAGNPLIEICREEVTAIPEGEAVII------- 134

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
                +T  LT+      +               +P  +  +  M   F + R   G  A
Sbjct: 135 -----ATGPLTSDALASDISRFTGENCLFFYDAVAPIVAAESINMGKVFRSSRYGKGEAA 189

Query: 203 RLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAI 262
            L+       + E     E         +K   ++ E  +         +        A 
Sbjct: 190 YLNCP---LSREEY----EVFWEALVKAEKAPRKEFEKELHFEGCMPVEV-------LAA 235

Query: 263 YSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
              +   YGP     + D   R G R    + L  E     +    G  T L  + Q + 
Sbjct: 236 RGKETLLYGPMKPVGLIDP--RTGRRPYAVVQLRQENAAATLFNMVGFQTGLKWDEQKRV 293

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQ 381
            R IPGLE+   +R G      +IN P  L PT +T+K   LF AGQI G  GY E+AA 
Sbjct: 294 FRLIPGLEEAEFVRFGVMHRNTFINSPVLLHPTFQTRKNPALFFAGQITGVEGYVESAAS 353

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
           GL+AGIN+AR     + + F R  ++ G +   +T+                    +P N
Sbjct: 354 GLMAGINAARLLAGKEPLVFPRNTAH-GSLAHYITAADPAH--------------FQPMN 398

Query: 442 ADNRLTPIGMKLGCIG-ERRQKRFAKY-IQEYNFLRSLL 478
            +  L P   +      + R +  AK  ++  +  +  L
Sbjct: 399 INFGLFP-PFEARIRDKKERYRTVAKKALESIDRFKETL 436


>gi|254505219|ref|ZP_05117370.1| tRNA:m(5)U-54 methyltransferase [Labrenzia alexandrii DFL-11]
 gi|222441290|gb|EEE47969.1| tRNA:m(5)U-54 methyltransferase [Labrenzia alexandrii DFL-11]
          Length = 472

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 146/447 (32%), Gaps = 32/447 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + VIGGG AG EAA   AK G    L   +            +  L   +  R  D+   
Sbjct: 4   IHVIGGGLAGSEAAWQIAKAGFDVVLHEMRPVRKTEAHQTDGLAELVCSNSFRSDDSEQN 63

Query: 68  LMGRVADAAG--IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            +G +           +          G     DR  +  A+ + +     + + + EVA
Sbjct: 64  AVGLIHHELRQLGSLIMACADANQVPAGSALAVDRHGFSDAVTKALEEHPRITISRDEVA 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E      +++            LT+      V+        A     +P     + 
Sbjct: 124 GLPPEDWE--KVIIATG--------PLTSPALSEAVLAKSGEDALAFFDAIAPIVHFDSI 173

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +   +   R     P       +     ++Q+  E  I      D    ++ E      
Sbjct: 174 DLDKAWFQSRYDKVGPGGTGKDYLNCPLDKQQY--EAFIDALIEGDTADFKEWE------ 225

Query: 246 NLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTD 303
              T        I+  A    +   +GP     + +      + +    + L  +     
Sbjct: 226 -ENTPYFDGCLPIEVMAARGRETLRHGPMKPMGLTNAHN--PDVKAYAVVQLRQDNALGT 282

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q    + IPGLE     R G      ++N PK L  TL  K    
Sbjct: 283 LYNMVGFQTKLKYGAQGDIFKMIPGLENAQFARLGGLHRNTFLNSPKVLDDTLRLKADPR 342

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+A+ G +AG+ +  ++   D I   +T +  G ++  +T   +  
Sbjct: 343 LRFAGQITGCEGYVESASVGCMAGLFAVMEAKGQDIITPPQTTAM-GALLGHITGGHIS- 400

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPI 449
                   A    S +P N +  L P+
Sbjct: 401 ----RDDGAGKPRSFQPMNVNFGLFPL 423


>gi|296284147|ref|ZP_06862145.1| tRNA (uracil-5-)-methyltransferase Gid [Citromicrobium
           bathyomarinum JL354]
          Length = 455

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 170/495 (34%), Gaps = 56/495 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV +IGGG AG EAA   A+ G    L   + +  +        +  L   +  R  D
Sbjct: 2   THDVHIIGGGLAGSEAAWQLAQAGLKVRLSEMRGSGEMTPAHQTDGLAELVCSNSFRSDD 61

Query: 64  ALDGLMGRVADAAGIQFRVLNV------KKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +    +G + D      R L+       +K     G     DR+++   ++R +    N+
Sbjct: 62  SDKNAVGLLHDE----MRRLDSIVMSAGEKARVPAGSAMAVDRDVFSAEVERRLAEHPNV 117

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            V++  V         I             +T  LT     + ++        A     +
Sbjct: 118 TVVRERVDTLPDAGLAIV------------ATGPLTAQNLAQSIVQATGEDRLAFFDAIA 165

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPAR-LDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           P     +  M   +   R    T A   DG  I    T +Q+  E  +      DK   +
Sbjct: 166 PIVHRDSIDMSKCWIQSRWNKRTEASNEDGDYINCPMTREQY--ETFVQALIDGDKTEFK 223

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF-----GERNGH 291
           + E      +          I+  A    +   YGP     +++          G     
Sbjct: 224 EWEADTPYFD------GCMPIEVMASRGVETLRYGPMKGVGLDNPYDTTEEHPQGRWPYA 277

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q +  RTIPGLE     R G      +IN P  
Sbjct: 278 VVQLRQDNKLGTLWNMVGFQTKLKYGAQVELFRTIPGLENAEFARLGGLHRNTFINSPLV 337

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L   L  K  + +  AGQI G  GY E++A GL+AG+  A +    D        + +G 
Sbjct: 338 LDRQLRLKNAAHIRFAGQITGCEGYVESSAIGLLAGLMVAAEHRGED-WSPPPRTTALGA 396

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           ++  +T     E             + +P N +  L P   ++    +++Q++ A   + 
Sbjct: 397 LLSHVTGDAEAE-------------TFQPMNVNFGLFPPLHEV----KKKQRKEAYTRRA 439

Query: 471 YNFLRSLLKSLVLTS 485
              L   L +     
Sbjct: 440 KADLGEWLAARARVP 454


>gi|316934010|ref|YP_004108992.1| gid protein [Rhodopseudomonas palustris DX-1]
 gi|315601724|gb|ADU44259.1| gid protein [Rhodopseudomonas palustris DX-1]
          Length = 478

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 153/443 (34%), Gaps = 34/443 (7%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA----LD 66
           IG G AG EAA   A+LG    L   + +          +  L   +  R  DA    + 
Sbjct: 15  IGAGLAGSEAAWQIARLGVPVVLHEMRPTRTTEAHKTDGLAELVCSNSFRSDDAANNAVG 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ + E+ G
Sbjct: 75  LLHAEMRKLGSLIMRAADANQVPA--GGALAVDRDGFSAAVSKALAEHPLVEIRREEIDG 132

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +    +++++            LT+      +  +      A     +P     +  
Sbjct: 133 LPPQDW--ANVIVATG--------PLTSAPLAEAIRGLTDESALAFFDAIAPIVHRDSID 182

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R     P       +    T +Q+  +  +      DK+  +  E      +
Sbjct: 183 MSVAWFQSRYDKVGPGGTGADYLNCPMTREQY--DAFVDALIAGDKVDFKDWEKDTPYFD 240

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                     I+  A    +   +GP     +   +     +    + L  +     +  
Sbjct: 241 ------GCLPIEVMAERGRETLRHGPMKPVGLT-NLHNPTVKPYAIVQLRQDNKLGTLYN 293

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  RTIPGLE     R G      ++N PK L  +L  +    L  
Sbjct: 294 MVGFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDESLRLRASPRLRF 353

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+ G  GY E+A+ GL AG+++A  +     +      + +G ++  +T   +     
Sbjct: 354 AGQMTGCEGYVESASVGLFAGLSAAADALGRS-LAPPPPTTALGSLLGHITGGHIE---- 408

Query: 426 MFTSRAEYRISLRPDNADNRLTP 448
              +      S +P N +  L P
Sbjct: 409 ---TIDAGPRSFQPMNINFGLFP 428


>gi|307946889|ref|ZP_07662224.1| tRNA:M(5)U-54 methyltransferase [Roseibium sp. TrichSKD4]
 gi|307770553|gb|EFO29779.1| tRNA:M(5)U-54 methyltransferase [Roseibium sp. TrichSKD4]
          Length = 470

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 160/481 (33%), Gaps = 46/481 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + V+GGG AG EAA   AK G    L   +            +  L   +  R    E +
Sbjct: 4   IHVVGGGLAGSEAAWQIAKRGIPVVLHEMRPVRKTDAHKTEGLAELVCSNSFRSDDSEQN 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  +   +     +     +  + PA  G     DR+ +  A+ + +     + + + E
Sbjct: 64  AVGLIHNELRKTGSLIMASADANQVPA--GSALAVDRDGFSDAVSKALQDHPLITIEREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG   E     S+++            LT+      V+        A     +P     
Sbjct: 122 IAGLPPEDWD--SVIIATG--------PLTSPALSEAVLAKSGEDALAFFDAIAPIVHFE 171

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  ++  +   R     P       +     + Q+  E  I      D    ++ E    
Sbjct: 172 SVNLEKAWFQSRYDKVGPGGTGKDYLNCPMDKDQY--EAFIDALISGDTTDFKEWE---- 225

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLN 301
                T        I+  A    +   +GP     + +      + +    + L  +   
Sbjct: 226 ---ENTPYFDGCLPIEVMAARGRETLRHGPMKPMGLTNAHN--PDVKPYAVVQLRQDNAL 280

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T L    Q    R IPGLE     R G      ++N PK L  TL+ K  
Sbjct: 281 GTLYNMVGFQTKLRYGAQADIFRMIPGLEDAQFARLGGLHRNTFLNSPKVLDETLKLKAE 340

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L  AGQI G  GY E+A+ G + GI +A +      I      + +G ++  +T   +
Sbjct: 341 PRLRFAGQITGCEGYVESASVGCMTGIFAAMERLGQ-PITTPPQTTAMGALLSHITGGHL 399

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFAKYIQEY 471
           +         +    S +P N +  L P          G ++    + R K+ A   +  
Sbjct: 400 VH------EESGKPRSFQPMNVNFGLFPPVEAPKTDENGKRIKGKDKSRAKKLAMTTRAK 453

Query: 472 N 472
            
Sbjct: 454 A 454


>gi|99034142|ref|ZP_01314238.1| hypothetical protein Wendoof_01000970 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 256

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/250 (36%), Positives = 131/250 (52%), Gaps = 16/250 (6%)

Query: 387 INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL 446
             +   S K +     RTDSYIGVMIDDL  KGV+E YR+FTSRAEYR+++R DNAD RL
Sbjct: 2   NAALSASEKKESFVLHRTDSYIGVMIDDLVIKGVIELYRLFTSRAEYRLAIRSDNADRRL 61

Query: 447 TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYE 506
           T  G  +  +   R       ++    L   L SL +T + L S  I    DG  +TA +
Sbjct: 62  TQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALD 121

Query: 507 FLSYPDFSIQNLFSICPDARKFSS----------------LVIERLQIESSYAAYTGRQM 550
            LSYP+     L  I P+    +                  + E ++IE+ Y  Y  RQ 
Sbjct: 122 LLSYPNIDWNKLQEIWPELSSVTRWNGKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQE 181

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
            + K ++ E    IP +F+YS +  LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L
Sbjct: 182 ADMKFLREEINTQIPINFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSIL 241

Query: 611 IYIKKNTVKL 620
           +Y++    K+
Sbjct: 242 VYLRNRKTKV 251


>gi|319898781|ref|YP_004158874.1| gid-family protein [Bartonella clarridgeiae 73]
 gi|319402745|emb|CBI76292.1| gid-family protein [Bartonella clarridgeiae 73]
          Length = 456

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 171/481 (35%), Gaps = 39/481 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           + +IGGG AG EA+   A+LG    L   +            +  L   +  R  DA   
Sbjct: 5   IHIIGGGLAGSEASWQIAQLGIPVILHEMRPKRKSDAHKTDKLAELVCSNSFRSDDASKN 64

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +  A  +  +  ++ K PA  G     DR+ +   +   +     + + + E
Sbjct: 65  AVGLLHAEMRLAKSLIMKAADINKVPA--GGALAVDRDEFSKTVTETLEKHPLITIKRRE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     E     ++++            LT+  F + +  I   +  +     +P     
Sbjct: 123 IHEIP-EDW--HNVIIATG--------PLTSPEFSQAIQAITGAEALSFFDAIAPIIYTD 171

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +     ++Q+  +  +       KI  R+ E    
Sbjct: 172 SINMDICWYQSRYDKIGPEGTGKDYLNCPLNQEQY--KIFVQALISGKKIEFREFENISY 229

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ E          +   +GP     + +       +    I L  +     
Sbjct: 230 FDGCLPVEVMAE-------RGVETLRHGPMKPMGLTNAHHPTI-KPYAVIQLRQDNKLGT 281

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  R IPGLEK    R G      Y+N P  L  +L  K+   
Sbjct: 282 LYNMVGFQTKLKYSEQTRIFRMIPGLEKAEFARLGGLHRNTYLNSPILLDESLRLKQKPQ 341

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +A + N        +T ++ G +++ +T   +  
Sbjct: 342 LRFAGQITGCEGYIESAAIGLLAGRFAAAEYNHACPSLPPKTTAF-GALLNHITGGHI-- 398

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE---RRQKRFAKYIQEYNFLRSLLK 479
                 ++   + S +P N +  L P  +    + +    ++K+ A   +  N     LK
Sbjct: 399 -----ATQETGKKSFQPMNINFGLFPPIISTNHLEKCLPNKEKKQAIITRALNDCIQWLK 453

Query: 480 S 480
           +
Sbjct: 454 N 454


>gi|148239718|ref|YP_001225105.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. WH 7803]
 gi|205830342|sp|A5GLJ3|TRMFO_SYNPW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|147848257|emb|CAK23808.1| Protein gid homolog [Synechococcus sp. WH 7803]
          Length = 451

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 152/482 (31%), Gaps = 64/482 (13%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKGH 57
           IG G AG EAA   A+ G    L+          H +S    + C+ + G        G 
Sbjct: 2   IGAGLAGTEAAWQVAEAGLDVQLVEMRPIRRSPAHHSSECAELVCSNSFGALSSDRAAGL 61

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           L  E+  L  ++ ++AD   +              G     DR  Y  ++ + +     +
Sbjct: 62  LQEELRRLGSVVIQMADRHAV------------PAGGALAVDRGRYSASLTQLLEQHPRV 109

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
             ++ E         +         S      +   TG   R   H       A  + + 
Sbjct: 110 SFVREEQIALPATDQVTVLATGPLTSDALAEDLRRFTG---RADCHFFD---AASPIVEG 163

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            S  +  +F    +D G          D   I      +Q+         F    +   Q
Sbjct: 164 DSVDMTQAFRASRYDKG----------DADYINCPMNREQY-------LGFRDALLAAEQ 206

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFGERN 289
            E         T       I+  A    D   YGP     + D          VR  +R 
Sbjct: 207 AELKDFDQGNATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRAKRA 266

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  E  +  +    G  T L    Q + ++ IPGLE    +R G      ++  P
Sbjct: 267 YAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLQMIPGLEGAEFVRFGVMHRNTFLEAP 326

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
             L  TL+ +    L  AGQI GT GY  A A G +AG N+AR       I   RT + +
Sbjct: 327 ALLDATLQFRSRPNLLAAGQITGTEGYAAAVAGGWLAGTNAARLVRGERPIDLPRT-TMV 385

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G +   ++        +       + +         R+     + G   +R         
Sbjct: 386 GALTHFISEAPSG---KFQPMPPNFGLL---PELPERIRDKRARYGAYRDRALADLLLAR 439

Query: 469 QE 470
           +E
Sbjct: 440 EE 441


>gi|237834887|ref|XP_002366741.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           ME49]
 gi|211964405|gb|EEA99600.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           ME49]
          Length = 1405

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 93/224 (41%), Positives = 136/224 (60%), Gaps = 8/224 (3%)

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  ++ L  S        GR KTGTPARL   +I + + ++Q + E   PFSF+      
Sbjct: 649 EQSASELAASLRDLGLPMGRFKTGTPARLYRHSIDFSRLQEQPS-ECPSPFSFLHSPSRL 707

Query: 236 RQ-----IECGITRTNLETHRIIMENIKHSAIY--SGDIKSYGPRYCPSIEDKIVRFGER 288
           R+     + C +T TN ETH I+  +++    +      +  GPRYCPSI  K++RF +R
Sbjct: 708 RELRPVTVSCFLTYTNRETHEIVRRHLEELPRHSGGEGRRGLGPRYCPSIATKVLRFPDR 767

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H ++LEPEGL++ ++YPNG+S A     Q   +R+I GLE V +  P Y +EYD++ P
Sbjct: 768 PRHAVWLEPEGLDSALIYPNGLSGAFSPPTQLSLLRSIRGLENVEMAAPAYDVEYDFVVP 827

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
             L  +LETK ++GLF+AGQ+ GTTGYEEAAA GL+AG N+A +
Sbjct: 828 ASLSISLETKTVAGLFVAGQVLGTTGYEEAAAMGLLAGWNAALR 871



 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 7/132 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV V+G GHAG EAA  +A++GAST L+T    T+G +SCNP+IGG+GKG LV E+DA
Sbjct: 329 QFDVCVVGAGHAGLEAALASARVGASTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDA 388

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-----V 119
           L G +GR AD A I +RVLN  +GPA  G R Q DRELY+  + RE+  QE +D     +
Sbjct: 389 LGGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRELYKGVVTREV--QERVDRGDFAL 446

Query: 120 IQGEVAGFNTEK 131
           ++G       E+
Sbjct: 447 LEGRATRLLVEE 458



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 397  DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
              I  SR    +GV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G +
Sbjct: 1002 PAISLSREKFLLGVCAHDLTQIGVQEPYRMFASRSECRLSTRPDNADLRCIDTALRGGIV 1061

Query: 457  GE-RRQKRFAKYIQEYN 472
             +  R ++  +   +  
Sbjct: 1062 RDVERMEKTRRRRAKVE 1078


>gi|221503461|gb|EEE29152.1| glucose inhibited division protein A, putative [Toxoplasma gondii
           VEG]
          Length = 1408

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 93/224 (41%), Positives = 136/224 (60%), Gaps = 8/224 (3%)

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           +  ++ L  S        GR KTGTPARL   +I + + ++Q + E   PFSF+      
Sbjct: 649 EQSASELAASLRDLGLPMGRFKTGTPARLYRHSIDFSRLQEQPS-ECPSPFSFLHSPSRL 707

Query: 236 RQ-----IECGITRTNLETHRIIMENIKHSAIY--SGDIKSYGPRYCPSIEDKIVRFGER 288
           R+     + C +T TN ETH I+  +++    +      +  GPRYCPSI  K++RF +R
Sbjct: 708 RELRPVTVSCFLTYTNRETHEIVRRHLEELPRHSGGEGRRGLGPRYCPSIATKVLRFPDR 767

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H ++LEPEGL++ ++YPNG+S A     Q   +R+I GLE V +  P Y +EYD++ P
Sbjct: 768 PRHAVWLEPEGLDSALIYPNGLSGAFSPPTQLSLLRSIRGLENVEMAAPAYDVEYDFVVP 827

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
             L  +LETK ++GLF+AGQ+ GTTGYEEAAA GL+AG N+A +
Sbjct: 828 ASLSISLETKTVAGLFVAGQVLGTTGYEEAAAMGLLAGWNAALR 871



 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/132 (49%), Positives = 87/132 (65%), Gaps = 7/132 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV V+G GHAG EAA  +A++GAST L+T    T+G +SCNP+IGG+GKG LV E+DA
Sbjct: 329 QFDVCVVGAGHAGLEAALASARVGASTLLVTQSVRTLGELSCNPSIGGIGKGTLVSEVDA 388

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-----V 119
           L G +GR AD A I +RVLN  +GPA  G R Q DRELY+  + RE+  QE +D     +
Sbjct: 389 LGGGIGRWADQAAIHWRVLNASRGPATWGVRAQIDRELYKGVVTREV--QERVDRGDFAL 446

Query: 120 IQGEVAGFNTEK 131
           ++G       E+
Sbjct: 447 LEGRATRLLVEE 458



 Score = 68.4 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 397  DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
              I  SR    +GV   DLT  GV EPYRMF SR+E R+S RPDNAD R     ++ G +
Sbjct: 1002 PAISLSREKFLLGVCAHDLTQIGVQEPYRMFASRSECRLSTRPDNADLRCIDTALRGGIV 1061

Query: 457  GE-RRQKRFAKYIQEYN 472
             +  R ++  +   +  
Sbjct: 1062 RDVERMEKTRRRRAKVE 1078


>gi|298492891|ref|YP_003723068.1| gid protein ['Nostoc azollae' 0708]
 gi|298234809|gb|ADI65945.1| gid protein ['Nostoc azollae' 0708]
          Length = 438

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 157/473 (33%), Gaps = 71/473 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +      G
Sbjct: 8   VIGGGLAGTEAAWQIAQAGIPVILHEMRPKRFSPAHHTENLAELVCSNSFGSMASDRAAG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  ++   AD   +              G     DR  +   + + + +   
Sbjct: 68  LLHEELRQLGSIVIAKADEHAV------------PAGGALAVDRAQFGEDLTQTLANHPL 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +D  +GEV            + +            LT+      +     ++        
Sbjct: 116 IDFRRGEVTAIPEGI-----VALASG--------PLTSPDLSADLQRFTGMEYLNFFDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L+                +     F  +     
Sbjct: 163 SPIIVGDSINKDVAFMASRYDKGEGAYLNCPM------------NKEQYLHFWEELRKAE 210

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           Q E                 I+  A    D   YGP     + D   R GE     I L 
Sbjct: 211 QTELKDFEKETAKFFEACLPIEEMARRGEDTMRYGPLKPVGLSDS--RTGESPYAVIQLR 268

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-FPTL 355
            E     +    G  T L    Q +  + IPGLEK   +R G      ++N  +L   +L
Sbjct: 269 QEDKAHQLWNMVGFQTNLRWGEQKRVFQMIPGLEKAEFVRLGVMHRNTFLNAPQLMSASL 328

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  A+A G +AG N+AR +   + +    T + +G + + +
Sbjct: 329 QFKERPTLLAAGQLIGTEGYTAASAGGWLAGTNAARLALGKEPLILPVT-TMMGALFEFI 387

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGER--RQKRFA 465
                         R+      +P   +  + P +G+K+    E+  R +  A
Sbjct: 388 --------------RSASPKHFQPMAPNFGILPDLGVKIKSKPEKYGRYRDRA 426


>gi|220922176|ref|YP_002497477.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium nodulans
           ORS 2060]
 gi|219946782|gb|ACL57174.1| gid protein [Methylobacterium nodulans ORS 2060]
          Length = 473

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 157/472 (33%), Gaps = 33/472 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + +IGGG AG EAA   A+ G    L   +            +  L   +  R    E++
Sbjct: 7   IHIIGGGLAGSEAAWQIAEAGIPVVLHEMRPVRGTEAHRTDGLAELVCSNSFRSDDAELN 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  R  +  + PA  G     DRE +  A+   + +   + + + E
Sbjct: 67  AVGLLHQEMRRLGSLIMRSGDAHQVPA--GGALAVDREGFSRAVTAALETHPQVTIAREE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G         S+++            LT      G+  +      A     +P     
Sbjct: 125 IDGLPPASWD--SVIVATG--------PLTAPGLAEGIRGLTGADSLAFFDAIAPIVHRD 174

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I     ++Q+A      F            +    
Sbjct: 175 SIDMGVAWFQSRYDKAGPGGTGADYINCPLDQEQYA-----AFVAALTAGETTSFKEWEA 229

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T    +      I+  A    +   +GP     + +       +    + L  +     
Sbjct: 230 ST---PYFDGCLPIEVMAERGPETLRHGPMKPFGLTNPHNPTV-KAYAIVQLRQDNALGT 285

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLEK    R G      Y++ P+ L  TL  K    
Sbjct: 286 LYNMVGFQTKLRHAEQVRIFRTIPGLEKAEFARLGGLHRNTYLDSPRLLDATLRLKADPR 345

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +A +           T + +G +I  +T   V  
Sbjct: 346 LRFAGQITGCEGYVESAAVGLMAGRYAAAERLGRTLAPLPPTTA-LGALIAHITGGHVC- 403

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                   A    S +P N +  L P   +     + R+ R  +  Q     
Sbjct: 404 -----AEEAGAPRSFQPMNVNFGLFPPLERAPKAPDGRRLRGTEKAQAKKRA 450


>gi|222148957|ref|YP_002549914.1| tRNA (uracil-5-)-methyltransferase Gid [Agrobacterium vitis S4]
 gi|221735943|gb|ACM36906.1| glucose inhibited division protein A [Agrobacterium vitis S4]
          Length = 485

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 160/485 (32%), Gaps = 56/485 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG- 52
           N  + + +IGGG AG EAA   A+ G    L           HKT ++  + C+ +    
Sbjct: 5   NTYFPIHIIGGGLAGSEAAWQIAEAGVPVILHEMRGLRGTDAHKTDSLAELVCSNSFRSD 64

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G +  E+     L+   AD                  G     DR+ +  A+ 
Sbjct: 65  DATANAVGVIHAEMRLAGSLIIACADRH------------QVPAGGALAVDRDGFAEAVT 112

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           + + +   + V++ E+ G       +S I          ++  LT+      +       
Sbjct: 113 QALHAHPLVTVVREEITGLPPRDWDLSII----------ASGPLTSPALAEAIRSETGED 162

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             A     +P     +  M   +   R     P       I     E Q+     +    
Sbjct: 163 ALAFFDAIAPIVHRDSINMDICWYQSRYDKVGPGGTGKDYINCPLDEAQY--NAFVDALI 220

Query: 229 MTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
             D +  ++           T        I+  A    +   +GP     + +       
Sbjct: 221 AGDAVGFKEW--------EGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNSHNPTV- 271

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           +    + L  +     +    G  T L    Q +  R IPGLE     R G      YI+
Sbjct: 272 KAYAVVQLRQDNALGTLYNMVGFQTKLRYGAQAEIFRMIPGLENAEFARLGGLHRNTYIH 331

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P  L  +L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    +        +
Sbjct: 332 SPVLLDQSLSLKSRPGLRFAGQITGCEGYVESASIGLLAGRFAAAERKG-EAFSPPPVTT 390

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G +++ +T   ++      ++    + S +P N +  L P       +     KRF  
Sbjct: 391 ALGALLNHITGGHIV------SNDEPGKKSFQPMNINFGLFPDLEPGSIVKPEGVKRFRG 444

Query: 467 YIQEY 471
             +  
Sbjct: 445 KDKTV 449


>gi|154249431|ref|YP_001410256.1| tRNA (uracil-5-)-methyltransferase Gid [Fervidobacterium nodosum
           Rt17-B1]
 gi|205830334|sp|A7HL16|TRMFO_FERNB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154153367|gb|ABS60599.1| gid protein [Fervidobacterium nodosum Rt17-B1]
          Length = 430

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 154/432 (35%), Gaps = 58/432 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIGG----LG 54
           V +IG G AG EAA    K G +  +   K         +     + C+ ++        
Sbjct: 5   VHIIGAGLAGSEAAWQLVKNGFNVVIHEMKRVKKSPVHVSENFAELVCSNSLKSTDLKNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +G L  E++    L+   A                   G     DRE +   +  ++L  
Sbjct: 65  EGLLKAEMEIWGSLILECAYN------------NSVPAGKALAVDREKFSQCVTEKLLQT 112

Query: 115 ENLDVIQGEVAG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + V+  EV   +  +  II++    D  +     +   TG F                
Sbjct: 113 GLVKVVWEEVEKPYTDDIWIIATGPTTDGKL--AEWIREQTGGFFN------------FF 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  S  +  M   F   R   GT   ++       +  ++F +E +       +  
Sbjct: 159 DAVAPIVSAESINMDVCFVADRYGVGTGDYINCPMT--KEEYERFWNELVNAQVIEIEDF 216

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             + +         E  + I E     A    D   YGP     I D   + G+     I
Sbjct: 217 DRKLL--------FERCQPIEE----IARSGKDAMRYGPLRPVGIVDP--KTGKEPYAVI 262

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E +   +    G  T L    Q + I+ IPGLE   I+R G      YI+ PK L 
Sbjct: 263 QLRKENVEGTMYNIVGFQTRLKWGEQRRIIQLIPGLENAEILRYGVMHRNSYIDSPKVLD 322

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK+  +F AGQI G  GY E+A  GL  G+N +R     D I F    +  G ++
Sbjct: 323 EYLRLKKMPNVFFAGQITGVEGYVESAMTGLYVGLNISRLILGKDMIKFPE-KTMCGALV 381

Query: 413 DDLTSKGVLEPY 424
             +T+   L+P 
Sbjct: 382 RYITTAPELKPM 393


>gi|16331423|ref|NP_442151.1| tRNA (uracil-5-)-methyltransferase Gid [Synechocystis sp. PCC 6803]
 gi|26006760|sp|Q55692|TRMFO_SYNY3 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|1001593|dbj|BAA10221.1| glucose inhibited division protein A [Synechocystis sp. PCC 6803]
          Length = 456

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/487 (19%), Positives = 161/487 (33%), Gaps = 55/487 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL---VREIDA 64
           + VIGGG AG EAA   A+ G    L   +   +     +  +  L   +         A
Sbjct: 7   IHVIGGGLAGTEAAWQIAQAGVPVILTEMRPERLSPAHHSEDLAELVCSNSFGAKAGDRA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +   + +     +    PA  G     DR ++  ++  ++ S   +++ +GEV
Sbjct: 67  AGLLQTELRQLSSLIITTADRHAVPA--GGALAVDRGIFSRSLTEQVASHPLVELRRGEV 124

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +    +            LT+      +     ++  +     SP     +
Sbjct: 125 TEIPREGITV----LTTG--------PLTSPALTEDLQQFTGMEYLSFFDAASPIVVGDS 172

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R   G  A L+                R   F+F        Q       
Sbjct: 173 INKEVAFFASRYDKGEAAYLNCP------------FNREQYFNFWQALCEAEQAPLKDFD 220

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE---------RNGHQIFL 295
                       I+  A    D   YGP     + D   R G+         +    + L
Sbjct: 221 RETAKFFEGCLPIEELAQRGEDTMRYGPLKPVGLFDA--RLGDFRDPANKEKKPYAVVQL 278

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             E     +    G  T L    Q +  R IPGLE    +R G      +IN P+ L  +
Sbjct: 279 RQEDKAGQLWNMVGFQTNLRWGEQGRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTAS 338

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L       LF AGQ+ GT GY  A A G +AG N+AR +  L  +    T + +G + + 
Sbjct: 339 LHFGDRQTLFAAGQLVGTEGYAAATAGGWLAGTNAARLALGLPLLTLPAT-TMMGALFNF 397

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           ++S     P         + I          L  +  ++    ER  +   + + +    
Sbjct: 398 ISSAS---PKHFQPMPPNFGI----------LPELPQRIRNKQERYGQYRDRALADLTTW 444

Query: 475 RSLLKSL 481
           ++ +KSL
Sbjct: 445 QTSIKSL 451


>gi|153009661|ref|YP_001370876.1| tRNA (uracil-5-)-methyltransferase Gid [Ochrobactrum anthropi ATCC
           49188]
 gi|166989562|sp|A6X1E3|TRMFO_OCHA4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|151561549|gb|ABS15047.1| gid protein [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 158/496 (31%), Gaps = 69/496 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V V+GGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVVGGGLAGSEAAWQLAQAGVPVILHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+  ++ +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTAKLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +++ EV G   E+   + +              LT  +    +         A  
Sbjct: 118 HPLITIVREEVTGLPPEEWGTTIVAT----------GPLTAPSLAEAIQAQTGADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALVEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KAYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  K    L  AGQ+ G  GY E++A GL+AG  +A +      +      +  G +
Sbjct: 337 DGTLRLKSRETLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLGQ-TLTPPPGTTAFGAL 395

Query: 412 IDDLTSKGV---LEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQ 461
           +  +T   +    EP          + S +P N +  L P        G +L    +   
Sbjct: 396 LGHITGGHIVADDEP---------GKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTVA 446

Query: 462 KRFAKYIQEYNFLRSL 477
           K+ A   +     R  
Sbjct: 447 KKRALSARALADCRQW 462


>gi|213608024|ref|ZP_03368850.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 201

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 4/196 (2%)

Query: 427 FTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           FTSRAEYR+ LR DNAD RLT +G +LG + + R  RF + ++     R  LKS  +T  
Sbjct: 1   FTSRAEYRLMLREDNADLRLTEMGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPS 60

Query: 487 NLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSY 542
             S+  ++        +  +  + L  P+ +   L S+   A         E+++I+  Y
Sbjct: 61  AESADEVNAHLTTPLSREASGEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKY 120

Query: 543 AAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMT 602
             Y  RQ  E ++    E  L+P   DY  +  LSNE+  KL+  KP ++ QAS+I G+T
Sbjct: 121 EGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVT 180

Query: 603 PAALNLLLIYIKKNTV 618
           PAA+++LL+++KK  +
Sbjct: 181 PAAISILLVWLKKQGM 196


>gi|229007797|ref|ZP_04165383.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock1-4]
 gi|228753474|gb|EEM02926.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus mycoides Rock1-4]
          Length = 212

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 119/206 (57%), Gaps = 7/206 (3%)

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           KG  EPYR+ TSRAEYR+ LR DNAD RLT IG ++G I E R  RF    ++    +  
Sbjct: 3   KGTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGQEIGLIPEERYGRFTVKKEQIEQEKLR 62

Query: 478 LKSLVLTS-----KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLV 532
           L+S+++       + + S   S  +DG    A + L  P+ + +++  + P   +    +
Sbjct: 63  LESIIIKPRPEVQELIRSVGGSELKDGIR--ASDLLRRPEMTYEHIRILAPSEVEIHDEI 120

Query: 533 IERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
            E+++I+  Y  Y  + + + + +K  E + IP D DY ++  +++E ++KL  ++P ++
Sbjct: 121 AEQVEIQIKYEGYIEKSLQQVERMKKMESKKIPVDIDYDAISGIASEARQKLKDVRPLSM 180

Query: 593 LQASKIEGMTPAALNLLLIYIKKNTV 618
            QAS+I G+ PA +++LL+YI++  +
Sbjct: 181 GQASRISGVNPADISILLVYIEQGKI 206


>gi|294083972|ref|YP_003550729.1| gid protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663544|gb|ADE38645.1| gid protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 453

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 163/475 (34%), Gaps = 49/475 (10%)

Query: 2   INRSYDVI-VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  +  VI VIGGG AG EAA   A+      L   +   +        +  L   +  R
Sbjct: 1   MQDNDGVIHVIGGGLAGSEAAFQIARQNIPVVLHEMRPKRMTDAHHTHGLAELVCSNSFR 60

Query: 61  EIDALDGLMGRVADA----AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             DA    +G + +       +  R  +  K PA  G     DR+ +  A++  + +   
Sbjct: 61  SDDATANAVGVLHEEMRILNSVILREADKHKVPA--GGALAVDRDGFSQAVEAALTADPL 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + + + EV         +             +T  LT+      +   G  +  A     
Sbjct: 119 ITIEREEVNDIPDSWKQVI-----------IATGPLTSPALAEMIRKWGGEEDLAFFDAI 167

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P     +  M   +   R    T        I    T+ Q+ D       F+   I   
Sbjct: 168 APIAHFDSVNMDVAWFQSRYDKSTDGGDGKDYINCPMTKSQYED-------FIDALIDGE 220

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           ++           +      I+  A    +   +GP     + +     G R    I L 
Sbjct: 221 KMS-FKEWEENTPYFEGCMPIEVMASRGRETLRFGPMKPVGLTNAHD--GSRPYAVIQLR 277

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T L    Q +  +TIPGLE     R G      +IN P+ L P L
Sbjct: 278 QDNALGTLYNMVGFQTKLKHAEQVRIFQTIPGLEDAQFARLGGLHRNTFINSPRLLDPQL 337

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K +  +  AGQI G  GY E+AA GL+AG  +A +    D       D+  G ++  +
Sbjct: 338 RMKSMPRIRFAGQITGVEGYVESAAIGLMAGQMAALELKGQD-WTAPPLDTAHGALLSHI 396

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRL-----TPIGMKLGCIGERRQKRFA 465
           T   + +             S +P N +  L     TP G K    G  R+  +A
Sbjct: 397 TGGAMAD-------------SFQPMNVNFGLFPEIETPAGTK-RLKGRDRKAAYA 437


>gi|254563205|ref|YP_003070300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens DM4]
 gi|254270483|emb|CAX26486.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens DM4]
          Length = 490

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 163/483 (33%), Gaps = 39/483 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G    L   +            +  L   +  R  DA   
Sbjct: 21  IHIVGGGLAGSEAAWQVAQGGRRVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 80

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 81  AVGLLHQEMRSLDSLIMRTADAHQVPA--GGALAVDREGFSRAVTAALEDHPNITIVREE 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +   +  A     +P     
Sbjct: 139 VAGLPPEDW---------GSTILA-TGPLTSPALAEAVGTLTGRESLAFFDAIAPIVHRD 188

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K   ++ E    
Sbjct: 189 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTAFKEWEASTP 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 247 YFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 299

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    
Sbjct: 300 LFNMVGFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQ 359

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  
Sbjct: 360 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVEA 418

Query: 423 PYRMFTSRAEYR--ISLRPDNADNRL-TPIGMKLGCIGERR----QKRFAKYIQEYNFLR 475
           P       AE     S +P N +  L  P+         +R    +K   K     +  R
Sbjct: 419 P-----EEAERNAPRSFQPMNVNFGLFPPLAQMPRNETGKRLRGPEKAALKKRALTDRAR 473

Query: 476 SLL 478
             L
Sbjct: 474 EDL 476


>gi|56750247|ref|YP_170948.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus elongatus PCC
           6301]
 gi|81300124|ref|YP_400332.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus elongatus PCC
           7942]
 gi|81170608|sp|Q5N5J0|TRMFO_SYNP6 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123556891|sp|Q31NM4|TRMFO_SYNE7 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56685206|dbj|BAD78428.1| glucose inhibited division protein [Synechococcus elongatus PCC
           6301]
 gi|81169005|gb|ABB57345.1| gid protein [Synechococcus elongatus PCC 7942]
          Length = 466

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/462 (20%), Positives = 151/462 (32%), Gaps = 49/462 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-- 58
           M   S  VIVIG G AG EAA   A+ G    L   +         + +   L   +   
Sbjct: 1   MAAISQPVIVIGAGLAGTEAAWQIAEAGVPVILYEMRPQRQSPAHHSESFAELVCSNSFG 60

Query: 59  -VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            +    A   L   +     + F   +  + PA  G     DR L+   + R +     +
Sbjct: 61  AMASDRAAGLLHEELRRLGSLVFSKASEHQVPA--GGALAVDRALFSEDLTRTVADHPLV 118

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           ++ + E+    TE      +V+            LT+      +         +     S
Sbjct: 119 EIRREELRSLPTEGI----VVLCTG--------PLTSPDLAEDLQRFTGQDYCSFFDAAS 166

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P  +  +      F   R   G  A L+                R    +F    +T  Q
Sbjct: 167 PIVTGESIDQAIAFRASRYDKGEAAYLNCPL------------NRDQYLAFREALVTAEQ 214

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE---------R 288
            E                 I+  A    D   YGP     + D   R G+         R
Sbjct: 215 AELKDFEQESAKFFEGCLPIEELARRGEDTMRYGPLKPVGLFDA--RLGDWRDPENRSRR 272

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  E    ++    G  T L    Q +  + IPGL +   +R G      ++N 
Sbjct: 273 PYAIVQLRQEDRAGNLWNLVGFQTNLRWGEQKRIFQMIPGLSQAEFVRFGVMHRNTFVNA 332

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P+ L  +L+ ++   L  AGQ+ GT GY  A A G +AG N+AR +     +    T   
Sbjct: 333 PQLLDASLQFRQRPTLLAAGQLIGTEGYSAAVAGGWLAGTNAARLALGRSPLVLPDTL-V 391

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEY----RISLRPDNADNR 445
            G +   ++S    EP         +     +   P N  +R
Sbjct: 392 SGSLFRFISS---AEPKYFQPMPPNFGILPNLEQPPRNKKDR 430


>gi|237823901|pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
           With Glutathione
          Length = 443

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 171/495 (34%), Gaps = 71/495 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V V+G G AG EAA    +LG    L           H T     + C+ ++GG G    
Sbjct: 4   VNVVGAGLAGSEAAWTLLRLGVPVRLFEXRPKRXTPAHGTDRFAEIVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E      L+   AD A +              G     DRE +   +   +   
Sbjct: 64  KGLLQAEXRRAGSLVXEAADLARV------------PAGGALAVDREEFSGYITERLTGH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             L+V++ EV             V+            LT+      +         A   
Sbjct: 112 PLLEVVREEVREIPPGIT-----VLATG--------PLTSEALAEALKRRFGDHFLAYYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  +   F  GR             +    TE+++       F      + 
Sbjct: 159 AASPIVLYESIDLTKCFRAGRYGQ------SADYLNCPXTEEEY-----RRF---HQALL 204

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q         LE     +  ++  A        +GP     + D   R G+     + 
Sbjct: 205 EAQRHTPHDWEKLEFFEACV-PVEELARRGYQTLLFGPXKPVGLVDP--RTGKEPFAVVQ 261

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E          G  T L    Q + I+ IPGLE   I+R G      Y+N P+ L  
Sbjct: 262 LRQEDKAGRXWSLVGFQTGLKWPEQKRLIQXIPGLENAEIVRYGVXHRNTYLNAPRLLGE 321

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLE ++  GL+ AG + G  GY E+AA G +AG+N+ARK+  L  +     +S +G ++ 
Sbjct: 322 TLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAPPE-ESXLGGLVR 380

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L            T+  E     +P  A+  L P         E+RQ  + + ++ ++ 
Sbjct: 381 YL-----------ATANPEG---FQPXYANWGLVPPVEGRXGKKEKRQAXYRRGLEAFSA 426

Query: 474 LRSLLKSLVLTSKNL 488
             S L   +   +  
Sbjct: 427 WLSGLNPPLPRPEAA 441


>gi|328950840|ref|YP_004368175.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451164|gb|AEB12065.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Marinithermus hydrothermalis DSM 14884]
          Length = 442

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/478 (21%), Positives = 175/478 (36%), Gaps = 70/478 (14%)

Query: 8   VIVIGGGHAGCEAAAVAA---------KLGASTALITHKTSTIGSMSCNPAIGG----LG 54
           V VIG G AG EAA  AA         ++        H T     + C+ ++GG      
Sbjct: 5   VHVIGAGMAGSEAALAAARLGARVRLYEMRPKRMTPAHHTDRFAELVCSNSLGGESPTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ A   ++   A+ A +              G     DRE++   +   + + 
Sbjct: 65  KGLLQAEMRAAGSVIMHAAERARV------------PAGGALAVDREVFSQIVTERLEAH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ EV     +      +V+            LT+      +  +      A   
Sbjct: 113 PRIEVVRDEVVTLPEDGP----VVLATG--------PLTSDALAAHLQDLLGDAFLAFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P         +  +  GR             +    TE ++       F    + +T
Sbjct: 161 AAAPVVLGETINTEICYRAGRYGQA------ADYLNCPMTEAEY-----RRF---YEALT 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +         LE        I+  A        +GP     + D   R G+     + 
Sbjct: 207 RARKHTPHDWERLEFFE-GCMPIEELARRGYQTPLFGPLKPVGLPDP--RTGQEPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q + +R IPGLE   I+R G      Y+N P+ L  
Sbjct: 264 LRREDREGRMWSLVGFQTGLKWGDQKEIVRLIPGLESAEIVRYGVMHRNTYLNAPRLLHS 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLE +K+  +F+AG + GT GY E+AA G +AG+N+AR    L  +     +S +G ++ 
Sbjct: 324 TLELRKLPRVFVAGVLAGTEGYLESAATGWLAGVNAARALQGLPPLTPPE-ESMLGGLVR 382

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
            L            T+ +E   + +P NA+  L P         E+RQ  + + ++ +
Sbjct: 383 FL-----------ATANSE---NFQPMNANWGLVPSVTARVPKKEKRQIMYRRGLEAF 426


>gi|108805133|ref|YP_645070.1| tRNA (uracil-5-)-methyltransferase Gid [Rubrobacter xylanophilus
           DSM 9941]
 gi|123068948|sp|Q1ATM0|TRMFO_RUBXD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|108766376|gb|ABG05258.1| gid protein [Rubrobacter xylanophilus DSM 9941]
          Length = 447

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/467 (20%), Positives = 160/467 (34%), Gaps = 83/467 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIG----GL 53
           DV V+GGG AG EAA  AA+ G    L           H T     + C+ ++G      
Sbjct: 3   DVTVVGGGLAGSEAAWQAARAGCRVELWEMRPVKETPAHHTDLFAELVCSNSLGNRSPET 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  ++ R ADA  +              G      RE +  A+   + S
Sbjct: 63  ASGLLKEELRRLGSVILRCADANAV------------PAGGALGVAREDFARAVTETVGS 110

Query: 114 QENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             N++V++ E         +I +  +  D    +   +   T  F               
Sbjct: 111 HPNIEVVRREARDIPEGPAVIATGPLTSDALHRKIEELSGETLYFFDAA----------- 159

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               SP     +      +   R   G    L+               +    ++F+ + 
Sbjct: 160 ----SPILHRDSIDDSVVYRASRYGRGEADYLNCPM------------DEETYYAFVEEL 203

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +       I +   + +      ++  A    D   +GP     + D   R G      
Sbjct: 204 ASAELSP--IKKFEEDMYFEGCLPVETIARRGPDTLRFGPMKPVGLPDP--RTGREPFAV 259

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           + L  +     +    G  T L    Q +  R IPGL++    R G      Y+    + 
Sbjct: 260 VQLRQDDAEGRLYNIVGFQTRLRWGEQKRVFRMIPGLQRAEFARFGVMHRNTYLPSNRM- 318

Query: 353 PTLE-TKKISG------LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             LE T KI        LF AGQ+ G  GY E+ A G +AG N+AR +  L+ I +    
Sbjct: 319 --LEATMKIRNALSERPLFFAGQLTGVEGYVESTAMGYIAGTNAARVARGLEPIRWPE-G 375

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452
           + +G +   +T+K                 +L+P N++  L P   K
Sbjct: 376 TMMGALARYITTKE---------------GTLQPINSNWGLVPAPPK 407


>gi|307154985|ref|YP_003890369.1| gid protein [Cyanothece sp. PCC 7822]
 gi|306985213|gb|ADN17094.1| gid protein [Cyanothece sp. PCC 7822]
          Length = 446

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 155/457 (33%), Gaps = 61/457 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK--- 55
           V VIGGG AG EAA   A+ G    L           H ++ +  + C+ + G +     
Sbjct: 5   VQVIGGGLAGTEAAWQIAQAGVPVILWEMRPVRTSPAHHSAELAELVCSNSFGAMASDRA 64

Query: 56  -GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   AD                  G     DR ++   +   + S 
Sbjct: 65  AGLLHEELRRLGSVIIGTADQH------------SVPAGGALAVDRGVFSRQLSETLASH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +++ + EV     E      +V+            LT+      +     ++  +   
Sbjct: 113 PLIELRRAEVTEIPREGV----VVLTTG--------PLTSPALTEDLQRFTGMEYFSFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +   +  F   R   G  A L+                R     F  +   
Sbjct: 161 AASPIIVGESINTEIAFKASRYDKGEAAYLNCPM------------NREQYLQFWQELSA 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQI 293
             Q E                 I+  A    +   +GP     + D   R+G+ R    I
Sbjct: 209 AEQAELKDFERETAKFFEGCLPIEELARRGEETMRFGPLKPVGLYDP--RYGDQRPYAVI 266

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF- 352
            L  E     +    G  T L    Q +  R IPGLE    +R G      +IN  +L  
Sbjct: 267 QLRQEDKAGQLWNMVGFQTNLKWGEQKRVFRLIPGLEAAEFVRMGVMHRNTFINSPQLLG 326

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P+L+ K    L  AGQ+ GT GY  AAA G +AG N+AR    L+ +    T + +G + 
Sbjct: 327 PSLQFKNRPTLLAAGQLVGTEGYTAAAAGGWLAGTNAARLVLGLEPVTMPVT-TMMGALF 385

Query: 413 DDLTSKGVLEPYRMFTSRAEYRIS----LRPDNADNR 445
           D ++S     P         + I      R  N  +R
Sbjct: 386 DFISSAS---PKHFQPMPPNFGILPEFTTRIKNKRDR 419


>gi|163843166|ref|YP_001627570.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis ATCC 23445]
 gi|189040804|sp|B0CLM0|TRMFO_BRUSI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|163673889|gb|ABY38000.1| gid protein [Brucella suis ATCC 23445]
          Length = 466

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQENALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|161618854|ref|YP_001592741.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella canis ATCC 23365]
 gi|254704202|ref|ZP_05166030.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis bv. 3 str.
           686]
 gi|260566549|ref|ZP_05837019.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 4 str. 40]
 gi|261754871|ref|ZP_05998580.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 3 str. 686]
 gi|189040803|sp|A9MAR7|TRMFO_BRUC2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161335665|gb|ABX61970.1| gid protein [Brucella canis ATCC 23365]
 gi|260156067|gb|EEW91147.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 4 str. 40]
 gi|261744624|gb|EEY32550.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 3 str. 686]
          Length = 466

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     E+Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDEEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|123968755|ref|YP_001009613.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. AS9601]
 gi|205830321|sp|A2BRU5|TRMFO_PROMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123198865|gb|ABM70506.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. AS9601]
          Length = 470

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/498 (22%), Positives = 176/498 (35%), Gaps = 68/498 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           VI+IG G AG EAA   A  G    L+          H TS  G + C+ + G       
Sbjct: 6   VIIIGAGLAGSEAAWQVASSGVPVKLVEMRPIKSTPAHHTSEFGELVCSNSFGALSPDRA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E+   + L+ + AD            K     G     DR  + +A+   + + 
Sbjct: 66  AGLLQKELRIFNSLIVQTAD------------KFAVPAGGALAVDRSKFSIALTEALSNH 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +++ + E     +++NI    ++            LT       +     +       
Sbjct: 114 PLIEIKRFEQLDLPSKENIT---ILATG--------PLTADELSYKIQAFTGIDACHFFD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP         +  F   R   G PA  +                  I F    + I 
Sbjct: 163 AASPIIYGDTIDQEIVFKASRYDKGDPAYFNCPM----------GKNDYINF--RNELIK 210

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY--------CPSIEDKIVRFG 286
             Q+                  I+  A    D   YGP             + D+  R  
Sbjct: 211 GEQVNLKDFEKESANFFEACLPIEEIARRGVDTMRYGPLKSIGLWNPKWGDLFDRENRLK 270

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E L   ++   G  T L    Q +  R IPGLEK   +R G      ++
Sbjct: 271 KRPHAVVQLRKEDLEGKLLNMVGFQTNLKWSEQKRIFRLIPGLEKAEFVRFGVMHRNTFL 330

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
             PK L PTL+  K   LF AGQI GT GY  AAA GL+AGIN++  +     + F    
Sbjct: 331 ESPKLLLPTLQFLKRENLFAAGQITGTEGYAAAAAGGLLAGINASLLAKGKKTVSFPD-Q 389

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER-RQKRF 464
           S IG +++ +++K             + +   +P  A   L P  +K     +R R K +
Sbjct: 390 SMIGSLMNFISNKN-------QILSNQQKNKFQPMPASFGLVPELIK-RIKDKRLRYKAY 441

Query: 465 AKY-IQEYNFLRSLLKSL 481
            +   +  N  ++ L S 
Sbjct: 442 QERSTEALNDFKNQLDSC 459


>gi|254293779|ref|YP_003059802.1| tRNA (uracil-5-)-methyltransferase Gid [Hirschia baltica ATCC
           49814]
 gi|254042310|gb|ACT59105.1| gid protein [Hirschia baltica ATCC 49814]
          Length = 473

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/487 (19%), Positives = 173/487 (35%), Gaps = 50/487 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + VIGGG AGCEAA  AA LG    L   + +          +  L   +  R    E +
Sbjct: 17  IHVIGGGMAGCEAAWQAANLGVPVILHEMRPTKKTEAHQTDGLAELVCSNSFRSDDFENN 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A G+     +  + PA  G     DR+ +  A+  +I +   + + + E
Sbjct: 77  AVGLLHEEMRRANGLIISTAHDHQIPA--GSALAVDRDGFSQAVTAKIQAHPLITIEREE 134

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G    +    S+++            LT+ +    +  +      +     +P     
Sbjct: 135 VPGIPPAEWD--SVIIATG--------PLTSPSMGEAIKELTGEDELSFFDAIAPIVYYD 184

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P+      +     E+Q+     + F    +     + +    
Sbjct: 185 SIDMSKAWRQSRYDKPGPSGETDAYVNCPMNEEQY-----LAFLEALNNAPKTEFKEWEK 239

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI-FLEPEGLNT 302
            T    +      ++  A    +   YGP     + +      +   H I  L  +    
Sbjct: 240 DT---PYFEGCLPVEVMASRGPETLRYGPLKPVGLTNA--HQPDVKAHAIVQLRQDNKLG 294

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q   +R IPGLE     R G      +IN PK L   L+ K   
Sbjct: 295 TLWNIVGFQTKMTYGAQKDVLRMIPGLENAEFARLGGIHRNTFINSPKVLNNKLQLKNQL 354

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQ++G  GY E+AA GL+AG  +A +    + I      + +G +I  +T   ++
Sbjct: 355 RIRFAGQVSGVEGYVESAAMGLLAGRFAAFERLGRE-ISPPPETTALGSLISHVTGGHLI 413

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTP----------IGMKLGCIGERRQKRFAKYIQEY 471
                       + + +P N +  L P           G +     + R K+ A+  +  
Sbjct: 414 -----------GKATFQPMNVNFGLFPDIDFAKADPETGKRYRGKDKSRAKKRAQSARAL 462

Query: 472 NFLRSLL 478
             ++  L
Sbjct: 463 KDIQEWL 469


>gi|103486647|ref|YP_616208.1| tRNA (uracil-5-)-methyltransferase Gid [Sphingopyxis alaskensis
           RB2256]
 gi|123379926|sp|Q1GTZ7|TRMFO_SPHAL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|98976724|gb|ABF52875.1| gid protein [Sphingopyxis alaskensis RB2256]
          Length = 449

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 155/460 (33%), Gaps = 64/460 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG-- 52
            +D+ +IGGG AG EAA   A+ G    L            H+   +  M C+ +     
Sbjct: 3   DHDIHIIGGGLAGSEAAWQLAEAGYHVRLSEMRGGGDMTPAHQGDGLAEMVCSNSFRSDD 62

Query: 53  ---LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L RE+ AL  ++ R ADA           K PA  G     DR+L+   + R
Sbjct: 63  GDSNAVGLLHREMRALGSIIMREADAT----------KVPA--GSALAVDRDLFSGGVTR 110

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +    N+ +++  +    TE   I             +T  LT  +    +        
Sbjct: 111 ALSEHPNITIVRERIDKLPTEGLTIV------------ATGPLTAASLAESIGAATGKDA 158

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A     +P     +  M   +   R     P       I     + Q+     +     
Sbjct: 159 LAFFDAIAPIVYRDSIDMDIAWMASRWDRVGPIGDGRDYINCPLDKDQYY--AFVQGLLD 216

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            +K   +  E                 I+  A    +   +GP     +++   R G   
Sbjct: 217 GEKTEFKDWEKDTPY------FEGCMPIEVMAERGVETLRFGPMKGVGLDNP--RTGRWP 268

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NP 348
              + L  +     +    G  T L    Q +  RTIPGLEK    R G      +I +P
Sbjct: 269 YAVVQLRQDNALGTLWNMVGFQTKLKHAEQVRLFRTIPGLEKAEFARLGGLHRNSFIRSP 328

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L   L  K    +  AGQI G  GY E+AA GLVA   +A +      +     ++ +
Sbjct: 329 ELLDRQLRLKSAPHIRFAGQITGCEGYVESAAIGLVAARFAAAELGGR-ALPPPPPETAL 387

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           G ++  +T       Y             +P N +  L P
Sbjct: 388 GALLCHITGGADASSY-------------QPMNVNFGLFP 414


>gi|167630280|ref|YP_001680779.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Heliobacterium modesticaldum Ice1]
 gi|205830337|sp|B0TH93|TRMFO_HELMI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|167593020|gb|ABZ84768.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Heliobacterium modesticaldum Ice1]
          Length = 439

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 161/471 (34%), Gaps = 71/471 (15%)

Query: 22  AVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LGKGHLVREIDALDGL 68
               + G    L           HKT     + C+ ++ G       G L  E+  L  L
Sbjct: 17  WQIVRQGVPVQLFEMRPTEMTPAHKTGNFAELVCSNSLRGAALENAVGLLKEEMRRLGSL 76

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           +   ADA  +              G     DRE +   +  ++++   + + + E+    
Sbjct: 77  IMEAADAHAV------------PAGGALAVDREGFSACITEKLVNHPRITLCREEIREIP 124

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
             + +I             ++  LT+    R +  +            +P     +  + 
Sbjct: 125 AARPLII------------ASGPLTSPALSRAIQGLTGEDYFYFYDAAAPIVYAESVDLS 172

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLE 248
             F   R   G     D   +     E ++  +R        +    ++ E  I      
Sbjct: 173 VAFWASRYDKG-----DADYLNCPMDESEY--DRFYEALVTAEAHPLKEFEKEIYFEGCM 225

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
              ++       A        +GP     + D   R G R    + L  E     +    
Sbjct: 226 PVEVM-------AKRGKQTLLFGPLKPVGLIDP--RTGRRPFAVVQLRKENRQGSMYNLV 276

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE+   +R G      +IN P  L PT + +K   +F AG
Sbjct: 277 GFQTHLKWPEQKRVFRMIPGLEQAEFVRYGVMHRNTFINSPTLLLPTYQLRKDPSVFFAG 336

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+AA GLVAG+N+AR       + F   ++ IG +   +T           
Sbjct: 337 QITGVEGYVESAAAGLVAGLNAARLVQGRSPLRFPP-ETAIGALPAYIT----------- 384

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           T+ A++    +P N    L P  ++   +  +R ++ A   +    L   +
Sbjct: 385 TAEAKH---FQPMNVTYGLFPPLVE--KVKGKRPRQQAHARRALESLERFM 430


>gi|325677874|ref|ZP_08157516.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus albus 8]
 gi|324110428|gb|EGC04602.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus albus 8]
          Length = 442

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 147/432 (34%), Gaps = 54/432 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIG----GLGKG 56
           VIG G AGCEAA   A  G    L   K               + C+ ++         G
Sbjct: 6   VIGAGLAGCEAAVQLANAGIEVELYEMKPKKFTPAHKYKGFAELVCSNSLKADRIESAAG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  +    A+ A +              G     DRE +  A+   I   + 
Sbjct: 66  MLKEEMRRLGSVTMECAELARV------------SAGGALAVDREKFSDAVTERIRQNKL 113

Query: 117 LDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           + VI+ EV        +I +  +  D       ++    G +L                 
Sbjct: 114 ITVIEDEVTEVPDGYAVIATGPLTSD---SLAESIGGICGEYL------------YFHDA 158

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P  +  +  M+  F   R   G     D   I     ++++  E         +    
Sbjct: 159 AAPIVTFESLDMEKAFFASRYGRG-----DADYINCPMNKEEY--EAFYNALVSAESAPL 211

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           ++ +      +          ++  A    D   +GP     + D   R G+R    + L
Sbjct: 212 KEHDKEHFAKDGFKVYEGCMPVEVLAKRGEDTLRFGPLKPVGLTDP--RTGKRPWAVVQL 269

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             E     +    G  T L    Q +    IPGLE    +R G      +IN PK L   
Sbjct: 270 RAENTAGSMYNLVGFQTNLKFGEQKRVFSMIPGLENAEFMRYGVMHRNTFINSPKLLNEQ 329

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
              ++   L+ AGQ+ G  GY E+AA G+ AG++ AR+   L  +    T + +G +   
Sbjct: 330 FNMRQRPELYFAGQMTGVEGYIESAASGIFAGLSLARQMRGLAPVSLPAT-TMLGALSKY 388

Query: 415 LTSKGV--LEPY 424
           ++S      +P 
Sbjct: 389 ISSPDTENFQPM 400


>gi|218532141|ref|YP_002422957.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium
           chloromethanicum CM4]
 gi|218524444|gb|ACK85029.1| gid protein [Methylobacterium chloromethanicum CM4]
          Length = 474

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 164/483 (33%), Gaps = 39/483 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G +  L   +            +  L   +  R  DA   
Sbjct: 5   IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 64

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 65  AVGLLHQEMRSLDSLIMRTADAHQVPA--GGALAVDREGFSRAVTAALEDHPNITIVREE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +   +  A     +P     
Sbjct: 123 VAGLPPEDW---------GSTILA-TGPLTSPALAEAVGALTGRESLAFFDAIAPIVHRD 172

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K   ++ E    
Sbjct: 173 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTAFKEWEASTP 230

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 231 YFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 283

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    
Sbjct: 284 LFNMVGFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQ 343

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  
Sbjct: 344 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVEA 402

Query: 423 PYRMFTSRAEYR--ISLRPDNADNRL-TPIGMKLGCIGERR----QKRFAKYIQEYNFLR 475
           P       AE     S +P N +  L  P+         +R    +K   K     +  R
Sbjct: 403 P-----EEAERNAPRSFQPMNVNFGLFPPLAQMPRNETGKRLRGPEKAALKKRALTDRAR 457

Query: 476 SLL 478
             L
Sbjct: 458 EDL 460


>gi|160934424|ref|ZP_02081811.1| hypothetical protein CLOLEP_03297 [Clostridium leptum DSM 753]
 gi|156867097|gb|EDO60469.1| hypothetical protein CLOLEP_03297 [Clostridium leptum DSM 753]
          Length = 439

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 166/482 (34%), Gaps = 56/482 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---REIDA 64
           + VIGGG AGCEAA  AA  GA   L   K         +  +  L   + +   R   A
Sbjct: 3   INVIGGGLAGCEAAWQAANAGAQVTLYEMKPEKYSPAHHSQNMAELVCSNSLKASRVESA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +     +  + PA  G     DR+ +   + R+I   EN+ V+  EV
Sbjct: 63  AGLLKEEMRRFHSLLMECADQTQVPA--GGALAVDRDEFSSLVTRKIKGHENIQVVSREV 120

Query: 125 AGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                        + +  +  D    + + +   + +F             A  +    S
Sbjct: 121 TELPLPNAEEPTVVATGPLTSDALAEKIAGLCGGSLSFFD----------AAAPIVTYGS 170

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  +F +  +D G          D   +     ++Q+        +F  + I   +  
Sbjct: 171 VDLSQAFTQSRYDKGE---------DDAYLNCPMNKEQY-------EAFYQELIRAERAP 214

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
                 N          ++  A    D   +GP     + D   R G R    + L  E 
Sbjct: 215 VHEFDVNNPKVYEGCMPVEVMAQRGTDTLRFGPLKPVGLRDP--RTGHRPWAVVQLRQEN 272

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETK 358
               +    G  T L    Q +    IP L+    +R G      +I+ P+ L      K
Sbjct: 273 REKTLYNLVGFQTNLRFPEQRRVFSMIPALKNAEFVRYGVMHRNTFIDSPRLLRRDFSMK 332

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
               LF AGQ+ G  GY  A   GL+AG N+ R+    + +   R ++ +G +   ++ +
Sbjct: 333 TRPDLFFAGQLTGLEGYLAAMFSGLLAGKNAVRRCQGRETLVLPR-ETMMGALSHYISDE 391

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            V +               +P  A+  + P   +   I ++R++  A   +    +  ++
Sbjct: 392 SVKD--------------FQPMGANFGILPPLQE--PIRDKRRRYGALAERSLERIEKII 435

Query: 479 KS 480
            S
Sbjct: 436 NS 437


>gi|289808379|ref|ZP_06539008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 190

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 117/189 (61%), Gaps = 1/189 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            Q  V     E + +   V Q     R   VVLT GTFL G IHIG      GR GD PS
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS 180

Query: 180 NSLFNSFMK 188
             L     +
Sbjct: 181 IPLSRRLRR 189


>gi|257440566|ref|ZP_05616321.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           A2-165]
 gi|257196889|gb|EEU95173.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           A2-165]
          Length = 458

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 167/492 (33%), Gaps = 49/492 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EI 62
           +Y V V+G G AGCEAA   A  G    L   K +       +     L   + ++   +
Sbjct: 3   NYKVTVLGAGLAGCEAALWLAGKGVQVTLCEQKPTHFSPAHKSAGFAELICSNSLKAERL 62

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D+  GL+       G Q      +      G     DR+ +  A+ R +    N+ V++ 
Sbjct: 63  DSASGLLKEEMRRMGSQLLEAAEEA-RVAAGGALAVDRDAFSAAVTRRVEECPNITVVRE 121

Query: 123 EVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           +V   +    I +++  + D ++     +   TG      +H             +P  +
Sbjct: 122 QVEHIDESAPILVATGPLTDGAL--ADEIGRLTG---DERLHFYDAV--------APIVT 168

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA--------DERLIPFSFMTDKI 233
             +      F   R   G    L+     ++K E +             L  F    ++ 
Sbjct: 169 AESLDYNKVFAASRYDRGEADYLNCP---FNKAEYEAFHAALASAERAPLHAFDAGAEQG 225

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
                +    + +  T       I+  A    D   +GP     + D     G R    +
Sbjct: 226 AQPDPDAHGKKADTVTVYEGCMPIEIMAARGADTMRFGPLRPVGLVDP--NTGHRPWANV 283

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E     +    G  T L    Q +    IPGLE    +R G      +++ P+ L 
Sbjct: 284 QLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAPRVLD 343

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K+   +F AGQI G  GY E+AA GL+A  +   +      +     D+  G +I
Sbjct: 344 AGLFLKEHPNVFFAGQITGFEGYMESAACGLLAARSIYARLEGRQ-LPPPPVDTMCGALI 402

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKYIQEY 471
             LT++                   +P  A+   L P+  +     ++R +  A   +  
Sbjct: 403 QYLTTE---------------NKHFQPMGANMGILPPLPAESRP-RDKRLRYMAVAERAV 446

Query: 472 NFLRSLLKSLVL 483
              +  L    L
Sbjct: 447 ASFQQWLNETAL 458


>gi|237815326|ref|ZP_04594324.1| gid protein [Brucella abortus str. 2308 A]
 gi|297248244|ref|ZP_06931962.1| tRNA:m(5)U-54 methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|237790163|gb|EEP64373.1| gid protein [Brucella abortus str. 2308 A]
 gi|297175413|gb|EFH34760.1| tRNA:m(5)U-54 methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 478

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 160/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 22  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 81

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 82  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 129

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 130 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 179

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 180 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 237

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 238 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 288

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 289 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 348

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 349 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 407

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T+    + S +P N +  L P        G +L    +   K+ 
Sbjct: 408 LGHITGGHIV------TNDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 461

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 462 ALSARALADCRNWL 475


>gi|144897799|emb|CAM74663.1| Gid protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 451

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/492 (19%), Positives = 171/492 (34%), Gaps = 71/492 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N    + VIGGG AGCEAA   AK G    L   +            +  L   + +R 
Sbjct: 5   MNTDKTIHVIGGGLAGCEAAWQIAKRGLCVTLHEMRPHRQTPAHQTDGLAELVCSNSLRS 64

Query: 62  IDA----LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            DA    +  L   +  A  +     +  K PA  G     DR+ +  ++++ + +  N+
Sbjct: 65  DDADYNAVGLLHEELRKAGSLIMDCADRNKVPA--GGALAVDRDGFSASVEQALAAHPNV 122

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDN---SMIRCSTVVLTTGTF-------LRGVIHIGKL 167
            +++ E+AG    +    ++V+      S      +   TG         +  +IH   +
Sbjct: 123 TILRQEMAGLPPAEWD--NVVIATGPLTSEPLAQAIRSVTGQDSLSFFDAIAPIIHKDSI 180

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-FADERLIPF 226
                           + ++              A L G+ + +   EK     E  +P 
Sbjct: 181 DFSKAWFQSRYDKGEGSDYINCPLTKDEYYAFIDALLAGEKVPFHDWEKDVPYFEGCLPI 240

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
             M ++                                 +  +YGP     + +    +G
Sbjct: 241 EVMAER-------------------------------GRETLAYGPGKPVGLTNP---YG 266

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            +    I L  +     +    G  T L    Q +  RTIPGLE     R G      ++
Sbjct: 267 PKPYAVIQLRQDNKLGTLYNMVGFQTKLRHGEQTRIFRTIPGLEAAEFARLGGLHRNTFV 326

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P+ L   L  K    L LAGQI G  GY E+ + G +AG+ ++ ++   D +    T 
Sbjct: 327 NGPRVLDQQLRLKAQPRLRLAGQITGCEGYVESTSIGFLAGLAASAQALGHDFVAPPPT- 385

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           S +G ++  +T     + Y             +P N +  L P   +     ER +K   
Sbjct: 386 SALGAILTHVTGGAHADTY-------------QPMNINFGLFPPAPER---DERGKKIKG 429

Query: 466 KYIQEYNFLRSL 477
           +  ++    R+ 
Sbjct: 430 RDRKKLYAERAR 441


>gi|62289839|ref|YP_221632.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 1 str.
           9-941]
 gi|82699764|ref|YP_414338.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis biovar
           Abortus 2308]
 gi|189024080|ref|YP_001934848.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus S19]
 gi|254689144|ref|ZP_05152398.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 6 str.
           870]
 gi|254697278|ref|ZP_05159106.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730177|ref|ZP_05188755.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 4 str.
           292]
 gi|256257394|ref|ZP_05462930.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 9 str.
           C68]
 gi|260545414|ref|ZP_05821155.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus NCTC 8038]
 gi|260754644|ref|ZP_05866992.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 6 str. 870]
 gi|260757867|ref|ZP_05870215.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 4 str. 292]
 gi|260761690|ref|ZP_05874033.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883670|ref|ZP_05895284.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus bv. 9 str. C68]
 gi|81170597|sp|Q57DL3|TRMFO_BRUAB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|123546680|sp|Q2YNL7|TRMFO_BRUA2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|62195971|gb|AAX74271.1| gid protein, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82615865|emb|CAJ10869.1| Pyridine nucleotide-disulphide oxidoreductase, class
           I:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:Glucose-in [Brucella melitensis biovar
           Abortus 2308]
 gi|189019652|gb|ACD72374.1| glucose-inhibited division protein A [Brucella abortus S19]
 gi|260096821|gb|EEW80696.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus NCTC 8038]
 gi|260668185|gb|EEX55125.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 4 str. 292]
 gi|260672122|gb|EEX58943.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674752|gb|EEX61573.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 6 str. 870]
 gi|260873198|gb|EEX80267.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella abortus bv. 9 str. C68]
          Length = 466

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 160/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T+    + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TNDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|317486124|ref|ZP_07944969.1| m(5)U-54 methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316922609|gb|EFV43850.1| m(5)U-54 methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 445

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 164/467 (35%), Gaps = 45/467 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++G G AGCE A   A+ G +  L   K          P +  L   + +R  +   G
Sbjct: 6   IALVGAGLAGCECALQLARRGFAVTLFEQKPEAYSPAHSMPQLAELVCSNSLRSDELASG 65

Query: 68  L---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +      + +       V +  + PA  G     DREL+   +   + ++ N+ +++  +
Sbjct: 66  VGLIKQELRELGSALMAVADATRVPA--GKALAVDRELFAGKVTELVEAEPNITLVRKAI 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A  +          ++    +  S   L + +    +      +        +P  +  +
Sbjct: 124 ADLDDP-------ALEGFERVVISAGPLASESLSASIARAVGAEHLYFYDAIAPIVAADS 176

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R   G P   +G  +     E ++            +K+ +R+ E     
Sbjct: 177 IDMSIAFWGSRY--GEPG--EGDYLNCPMNEDEY--RAFYQGLLDGEKVASREFE----- 225

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E H      ++  A       ++GP       D   R G R    + L PE  N  +
Sbjct: 226 --QEKHFEGCMPVEALAARGEKTLAFGPLKPVGFTDP--RTGRRPFALLQLRPENGNKTM 281

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q    R +PGLE    +R G      Y+N P  L   L  K    +
Sbjct: 282 FNLVGCQTKLTYPAQAVCFRKVPGLEHAEFVRFGSMHRNTYVNAPVSLNEELALKSRPNV 341

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            LAGQI G  GY E+ A GL  G   A K           T + +G +++ L++     P
Sbjct: 342 HLAGQITGVEGYVESIACGLWVGQMLAAKLAGRSLPKPPATTA-LGALLNHLST-----P 395

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            + F          +P N    L P   ++    + R++ +A   + 
Sbjct: 396 AKHF----------QPSNVHFGLMPEP-EVRVKKKERKQWYADRARA 431


>gi|320353067|ref|YP_004194406.1| gid protein [Desulfobulbus propionicus DSM 2032]
 gi|320121569|gb|ADW17115.1| gid protein [Desulfobulbus propionicus DSM 2032]
          Length = 443

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 166/475 (34%), Gaps = 49/475 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           + VIGGG AGCEAA  AA  G +  L   K          P +G L   + +R      A
Sbjct: 7   ITVIGGGLAGCEAAWQAAAQGVAVELYEMKPHRFSPAHELPQLGELVCSNSLRSNAVDSA 66

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +  R  +    PA  G     DR  +  A+   I +   + V + EV
Sbjct: 67  AGLLKEEMRRLDSLVMRAADSTAVPA--GTALAVDRRQFAAALTAAIEAHPLITVHRREV 124

Query: 125 AGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +V+    ++   ++     T + G          A     +P     
Sbjct: 125 ECIPEP---CDGPVVLAAGPLL-AGSLAEQLQTLVGGGQL-------AFYDAIAPIVDAD 173

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +  +   R     P    G  +      +Q+  E+ I        +     E    
Sbjct: 174 SLDREIVYRKSRWDDEGP----GDYLNCPMNREQY--EQFIGLLASAQTVALHAFEDPKY 227

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++            D   +GP     +   +   GE+    + L  E     
Sbjct: 228 FEGCLPIEVMCA-------RGADTLRFGPMKPVGLAHPV--TGEKPHAVVQLRAENREGT 278

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
                G  T L    Q +  RTIPGLE+   +R G      ++  P+ L PTLET++++G
Sbjct: 279 AYNLVGFQTKLTYPEQQRVFRTIPGLERAVFLRLGSIHRNTFVCAPRVLAPTLETRRVAG 338

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF+AGQ++G  GY E+A+ GL+AGIN+ R +     +      ++ G +I  L       
Sbjct: 339 LFVAGQLSGVEGYIESASMGLLAGINAGRLALGKKPLVPPPATAH-GALIQHLI------ 391

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR-QKRFAKYIQEYNFLRS 476
                   A   +  +P N +  L P         + R + R    + E    R 
Sbjct: 392 --------ASDPLHFQPSNVNFGLFPPLAGRKIAKKERGRLRAELALAEIAQWRR 438


>gi|309775659|ref|ZP_07670658.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916565|gb|EFP62306.1| tRNA:M(5)U-54 methyltransferase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 431

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 153/444 (34%), Gaps = 51/444 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V ++G G AGCEAA    K      LI  +         +     L   + +R     +A
Sbjct: 4   VSIVGAGLAGCEAAWQLVKRNIPVQLIEMRPQKASPAHHSEDFAELVCSNSLRSDSLQNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DR+ +   +   +     ++V++ EV
Sbjct: 64  VGILKEEMRHLDSLIMACADATRVPA--GSALAVDRQAFSRLVSDTLQQHPLVEVVREEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   II+S  +  +++     +   T                A  + +  S     
Sbjct: 122 THIPQGPVIIASGPLTSDAL--SKAIQEYTHA------DYFHFYDAAAPIIERDSIDFTK 173

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           +++K      R   G  A ++          K+  D       F  + I     +     
Sbjct: 174 AYIK-----SRYDKGEAAYINCP------MSKEEFDA------FYEELIHAETAQLHDF- 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              ET+       +  A        +GP     +E      G      + L  +     +
Sbjct: 216 -EDETYFEGCMPFEEMARRGRQTLLFGPMKPVGLERPD---GTLPYAVVQLRQDNAVASL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q + +  IPGLEKV+I+R G      Y+  PK L  T +  +   L
Sbjct: 272 YNIVGFQTHLKWGEQKRLLSMIPGLEKVSIVRYGVMHRNSYLCAPKVLRATYQHIERDDL 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQ+ G  GY E+AA GL+AG+N A    +  CI    T   IG M   +T     E 
Sbjct: 332 FFAGQLCGVEGYVESAASGLLAGLNMANLMREKRCIELPDT-CVIGSMAHYIT--HASER 388

Query: 424 YRMFTSRAEYRISLRPDNADNRLT 447
           Y             +P NA+  + 
Sbjct: 389 Y------------FQPMNANFGIM 400


>gi|23501780|ref|NP_697907.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis 1330]
 gi|148560039|ref|YP_001258873.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ovis ATCC 25840]
 gi|225852407|ref|YP_002732640.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis ATCC
           23457]
 gi|254693628|ref|ZP_05155456.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella abortus bv. 3 str.
           Tulya]
 gi|254701658|ref|ZP_05163486.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella suis bv. 5 str.
           513]
 gi|254706896|ref|ZP_05168724.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           M163/99/10]
 gi|254709996|ref|ZP_05171807.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           B2/94]
 gi|254713997|ref|ZP_05175808.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M644/93/1]
 gi|254716944|ref|ZP_05178755.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M13/05/1]
 gi|256031490|ref|ZP_05445104.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella pinnipedialis
           M292/94/1]
 gi|256044568|ref|ZP_05447472.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256061001|ref|ZP_05451158.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella neotomae 5K33]
 gi|256264096|ref|ZP_05466628.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 2 str. 63/9]
 gi|260168624|ref|ZP_05755435.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella sp. F5/99]
 gi|260563920|ref|ZP_05834406.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. 16M]
 gi|261213894|ref|ZP_05928175.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 3 str. Tulya]
 gi|261218749|ref|ZP_05933030.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M13/05/1]
 gi|261314359|ref|ZP_05953556.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M163/99/10]
 gi|261317545|ref|ZP_05956742.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis B2/94]
 gi|261321752|ref|ZP_05960949.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M644/93/1]
 gi|261325001|ref|ZP_05964198.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella neotomae 5K33]
 gi|261752212|ref|ZP_05995921.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 5 str. 513]
 gi|261758098|ref|ZP_06001807.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. F5/99]
 gi|265988579|ref|ZP_06101136.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M292/94/1]
 gi|265990993|ref|ZP_06103550.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|294852250|ref|ZP_06792923.1| tRNA:m(5)U-54 methyltransferase [Brucella sp. NVSL 07-0026]
 gi|54037183|sp|P64233|TRMFO_BRUSU RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|54041086|sp|P64232|TRMFO_BRUME RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166989560|sp|A5VQ76|TRMFO_BRUO2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|23347710|gb|AAN29822.1| gid protein, putative [Brucella suis 1330]
 gi|148371296|gb|ABQ61275.1| tRNA:M(5)U-54 methyltransferase [Brucella ovis ATCC 25840]
 gi|225640772|gb|ACO00686.1| gid protein [Brucella melitensis ATCC 23457]
 gi|260153936|gb|EEW89028.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. 16M]
 gi|260915501|gb|EEX82362.1| folate-dependent tRNA(M-5-U54)-methyltransferase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260923838|gb|EEX90406.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M13/05/1]
 gi|261294442|gb|EEX97938.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M644/93/1]
 gi|261296768|gb|EEY00265.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis B2/94]
 gi|261300981|gb|EEY04478.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella neotomae 5K33]
 gi|261303385|gb|EEY06882.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M163/99/10]
 gi|261738082|gb|EEY26078.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. F5/99]
 gi|261741965|gb|EEY29891.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella suis bv. 5 str. 513]
 gi|263001777|gb|EEZ14352.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094298|gb|EEZ18159.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 2 str. 63/9]
 gi|264660776|gb|EEZ31037.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella pinnipedialis M292/94/1]
 gi|294820839|gb|EFG37838.1| tRNA:m(5)U-54 methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 466

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|17987356|ref|NP_539990.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 1
           str. 16M]
 gi|225627384|ref|ZP_03785421.1| gid protein [Brucella ceti str. Cudo]
 gi|17983041|gb|AAL52254.1| glucose inhibited division protein a [Brucella melitensis bv. 1
           str. 16M]
 gi|225617389|gb|EEH14434.1| gid protein [Brucella ceti str. Cudo]
 gi|326408915|gb|ADZ65980.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis M28]
          Length = 478

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 22  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 81

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 82  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 129

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 130 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 179

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 180 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 237

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 238 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 288

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 289 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 348

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 349 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 407

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 408 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 461

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 462 ALSARALADCRNWL 475


>gi|256113441|ref|ZP_05454282.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella melitensis bv. 3
           str. Ether]
 gi|265994830|ref|ZP_06107387.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 3 str. Ether]
 gi|262765943|gb|EEZ11732.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella melitensis bv. 3 str. Ether]
          Length = 466

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDTDALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|256369322|ref|YP_003106830.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
 gi|255999482|gb|ACU47881.1| glucose-inhibited division protein A [Brucella microti CCM 4915]
          Length = 466

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 160/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+  ++ +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTAKLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|212704423|ref|ZP_03312551.1| hypothetical protein DESPIG_02479 [Desulfovibrio piger ATCC 29098]
 gi|212672144|gb|EEB32627.1| hypothetical protein DESPIG_02479 [Desulfovibrio piger ATCC 29098]
          Length = 453

 Score =  239 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 158/474 (33%), Gaps = 45/474 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG-- 67
           VIGGG AGCE A   A+ G    L   K         N  +  L   + +R  +   G  
Sbjct: 16  VIGGGLAGCECALRLARAGLQVTLFEQKPEFRSPAHVNDGLAELVCSNSLRSDELTSGIG 75

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   + +       + +  + PA  G     DRE +  AM + I S   + ++  ++  
Sbjct: 76  LLKAEMRELGSDFMELADAHRVPA--GKALAVDREAFSAAMTQRIRSTPGITLVHRQITS 133

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            +          +     +  +   + +      +  +            +P     +  
Sbjct: 134 LDDP-------ALDGFETVVLAAGPMASENLSASLAEVVGGDHCYFYDAIAPIVWTHSLN 186

Query: 187 MKFDFDTGRL--KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           M   F   R   + G      G  +     ++++  E          K+  R+ E     
Sbjct: 187 MDIVFRASRYGQEKGETG---GDYLNCPMNKEEY--EAFYNALLEAQKVGAREFEKEKHF 241

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   + E             ++GP       D   R G R    + L  E LN + 
Sbjct: 242 EGCMPVEALAE-------RGPRTLTFGPLKPVGFVDP--RTGRRPWAILQLRAETLNGET 292

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R +PGLEK    R G      Y+N P  L   L  K    +
Sbjct: 293 CNLVGCQTKLTYGEQARVFRMVPGLEKAEFARFGSMHRNTYVNAPVALNEDLSLKARPRV 352

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           FLAGQI G  GY E+AA G+  G+  A ++   + +     +  +G +++ L +      
Sbjct: 353 FLAGQITGVEGYLESAACGMWLGMLLAARAQGRE-LALPPLECALGALLNHLRTPVKH-- 409

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                         +P NA   L P   +     +R+    A+  + +   R+ 
Sbjct: 410 -------------FQPSNAHFGLMPELDEKAKKKDRKALYSARARERFAAWRAE 450


>gi|240140694|ref|YP_002965174.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens AM1]
 gi|240010671|gb|ACS41897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Methylobacterium extorquens AM1]
          Length = 490

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 164/483 (33%), Gaps = 39/483 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G +  L   +            +  L   +  R  DA   
Sbjct: 21  IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 80

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 81  AVGLLHQEMRSLDSLIMRTADAHQVPA--GGALAVDREGFSRAVTAALEEHPNITIVREE 138

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +   +  A     +P     
Sbjct: 139 VAGLPPEDW---------GSTILA-TGPLTSPALAEAVGTLTGRESLAFFDAIAPIVHRD 188

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K   ++ E    
Sbjct: 189 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTAFKEWEASTP 246

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 247 YFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 299

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    
Sbjct: 300 LFNMVGFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQ 359

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  
Sbjct: 360 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVEA 418

Query: 423 PYRMFTSRAEYR--ISLRPDNADNRL-TPIGMKLGCIGERR----QKRFAKYIQEYNFLR 475
           P       AE     S +P N +  L  P+         +R    +K   K     +  R
Sbjct: 419 P-----EEAERNAPRSFQPMNVNFGLFPPLAQMPRNETGKRLRGPEKAALKKRALTDRAR 473

Query: 476 SLL 478
             L
Sbjct: 474 EDL 476


>gi|313115000|ref|ZP_07800493.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622691|gb|EFQ06153.1| tRNA:M(5)U-54 methyltransferase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 457

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 171/492 (34%), Gaps = 49/492 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EI 62
           +Y V V+G G AGCEAA   A  G    L   K         +     L   + ++   +
Sbjct: 2   NYKVTVLGAGLAGCEAALWLAGKGVQVDLYEQKPVHFSPAHKSAGFAELICSNSLKAERL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           D+  GL+       G Q   LN  +      G     DR+ +   + R + S EN+ V +
Sbjct: 62  DSASGLLKEEMRRMGSQL--LNAAEMARVAAGGALAVDRDAFSAEVTRMVESCENITVHR 119

Query: 122 GEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            +V   + T   ++++  + D ++     +   TG      +H             +P  
Sbjct: 120 EQVEHIDETAPILVATGPLTDGAL--ADEIGALTG---DERLHFYDAV--------APIV 166

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA--------DERLIPFSFMTDK 232
           +  +      F   R   G    L+     ++K E +             L  F    ++
Sbjct: 167 TAESLDYNKVFAASRYDRGEADYLNCP---FNKEEYENFHAALASAERAPLHDFDTGAEQ 223

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                 +    + +  T       I+  A    D   +GP     + +     G R    
Sbjct: 224 SAQPDPDAHGKKADTVTVYEGCMPIEIMAARGADTMRFGPLRPVGLVNP--NTGHRPWAN 281

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T L    Q +    IPGLE    +R G      +++ P+ L
Sbjct: 282 VQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAPRVL 341

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K+   +F AGQI G  GY E+AA GL+A  +   +    + +     D+  G +
Sbjct: 342 SAQLCLKEHPNVFFAGQITGFEGYMESAACGLLAARSLYARLEGKE-LPAPPVDTMCGAL 400

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +  LT++                 + +P  A+  + P   +     ++R +  A+  +  
Sbjct: 401 VQYLTTE---------------NKNFQPMGANMGILPPLPEESRPRDKRLRYMAQAQRAV 445

Query: 472 NFLRSLLKSLVL 483
              +  L    L
Sbjct: 446 ASFQHWLDETSL 457


>gi|295103250|emb|CBL00794.1| tRNA:m(5)U-54 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 458

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 165/496 (33%), Gaps = 55/496 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL- 53
             Y V ++G G AGCEAA   A  G    L           HK+     + C+ ++    
Sbjct: 2   NEYKVTILGAGLAGCEAALWLAGKGVQVELYEQKPVHFSPAHKSEGFAELICSNSLKAER 61

Query: 54  ---GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L  E+  +   +   A+   +              G     DR+ +  A+ R 
Sbjct: 62  LDSASGLLKEEMRRMGSRLLTAAEETRV------------AAGGALAVDRDAFSAAVTRM 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           +   EN+ V + +V   +    I +++  + D ++     +   TG      +H      
Sbjct: 110 VEQCENITVHREQVETIDESAPILVATGPLTDGAL--ADEIGRLTG---DERLHFYDAVA 164

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
               +  + S      F    +D G            +   +           L  F   
Sbjct: 165 ---PIVTAESLDYGKVFAASRYDRGEADYLNCPFNKAEYEAFHAALASAERAPLHDFDTG 221

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            ++ T    +    + +  T       I+  A    D   +GP     + D     G R 
Sbjct: 222 AEQSTKPDPDAHGKKADTVTVYEGCMPIEIMAARGADTMRFGPLRPVGLVDP--NTGHRP 279

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  E     +    G  T L    Q +    IPGLE    +R G      +++ P
Sbjct: 280 WANVQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAP 339

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L   L  K    +F AGQI G  GY E+AA GL+A  N   +      +     D+  
Sbjct: 340 RVLSAQLCLKTHPNVFFAGQITGFEGYMESAACGLLAARNLYARLEGRQ-LPPPPADTMC 398

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKY 467
           G ++  LT++                 + +P  A+   L P+  +     ++R +  A+ 
Sbjct: 399 GALVQYLTTE---------------NKNFQPMGANMGILPPLPAETRP-RDKRLRYMAQA 442

Query: 468 IQEYNFLRSLLKSLVL 483
            +     +  L+   L
Sbjct: 443 ERAVASFQHWLEETAL 458


>gi|167751470|ref|ZP_02423597.1| hypothetical protein EUBSIR_02466 [Eubacterium siraeum DSM 15702]
 gi|167655278|gb|EDR99407.1| hypothetical protein EUBSIR_02466 [Eubacterium siraeum DSM 15702]
          Length = 452

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 148/476 (31%), Gaps = 56/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V VIG G AG EAA   A  G    L   K               L   + ++  D   A
Sbjct: 20  VTVIGAGLAGVEAAWALANRGFHVRLCEMKPEKYSPAHKYKGFAELVCSNSLKSADTASA 79

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +  R     K  A  G     +R  +  A+   I +   ++++ GE+
Sbjct: 80  CGMLKEEMRYMNSVTMRAAEKTKVGA--GGALAVNRTEFSDAVTEMITNHPYIEIVNGEI 137

Query: 125 AGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
             F     +I +  +  D   I    +    G+ L            +     +P  +  
Sbjct: 138 TEFPKSDTVIATGPLTSD---IFAEKIQERCGSPL------------SFYDAAAPIVTAE 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   F   R   G    ++       K E +     L+      + +  +  E    
Sbjct: 183 SIDMSLAFFATRYDKGEADYINCPM---TKEEYEAFYNELVNA----ESVQLKSFENLKV 235

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ +    S  Y              + D   R   R    + L  E     
Sbjct: 236 YEGCMPVEVLAKRGIESVRYGC-------MKPVGLIDP--RTDRRPYAVVQLRKENNEGT 286

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +    I GL+    +R G      ++N P  L           
Sbjct: 287 LYNLVGFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDN 346

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ+ G  GY E+AA G++AGIN AR  +    +    T      +   ++++    
Sbjct: 347 IYFAGQMTGVEGYVESAASGIIAGINLARALDGEKPLELPET-CMTAALARHISTENKD- 404

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                          +P  A+  + P   +   I +++ +      +    L+  L
Sbjct: 405 --------------FQPMGANMGILPPLPER--IKDKKLRYRTIADRGLEDLKKAL 444


>gi|320450937|ref|YP_004203033.1| tRNA:M(5)U-54 methyltransferase [Thermus scotoductus SA-01]
 gi|320151106|gb|ADW22484.1| tRNA:M(5)U-54 methyltransferase [Thermus scotoductus SA-01]
          Length = 437

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 165/485 (34%), Gaps = 71/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           V V+GGG AG EAA   A+LG    L   +            +  + C+ ++GG G    
Sbjct: 4   VTVVGGGLAGSEAAWTLARLGVPVRLYEMRPKRMTPAHATEKLAEIVCSNSLGGEGPANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+     L+   A             +     G     DRE +   +   +   
Sbjct: 64  KGLLQAEMRRAGSLVMEAA------------TRARVPAGGALAVDREEFSQYITERLSRH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
                          E        + +   I   T  LT+      +         +   
Sbjct: 112 P------------LVEVVREEVAEVPEGLAILA-TGPLTSDALSEAIRRRFGDHFLSYFD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +  ++  F  GR         +   +    TE+++   R        ++ T
Sbjct: 159 AASPIVLYESIDLETCFRAGRYGQ------EADYLNCPLTEEEY--RRFYQALLEAEEHT 210

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             + E                 ++  A        +GP     ++D   R G+     + 
Sbjct: 211 PHEWE-------KREFFEACVPVEELARRGYQTLLFGPMKPVGLKDP--RTGKEPFAVVQ 261

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q + I+ IPGLE   I+R G      Y+N P  L  
Sbjct: 262 LRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPLLLQE 321

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TLE ++  GLF AG + G  GY E+AA G +AG+N+AR+   L  +     +S +G ++ 
Sbjct: 322 TLEFREQEGLFAAGVLAGVEGYLESAATGFLAGLNAARRYQGLKPVAPPE-ESMLGGLVR 380

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L +                    +P  A+  L P         E+R+  + + ++ +  
Sbjct: 381 FLATANP--------------KGFQPMYANWGLVPPVEGRMAKKEKREAMYHRGLRAFEE 426

Query: 474 LRSLL 478
             + L
Sbjct: 427 WVASL 431


>gi|288818938|ref|YP_003433286.1| glucose-inhibited division protein [Hydrogenobacter thermophilus
           TK-6]
 gi|288788338|dbj|BAI70085.1| glucose-inhibited division protein [Hydrogenobacter thermophilus
           TK-6]
 gi|308752524|gb|ADO46007.1| gid protein [Hydrogenobacter thermophilus TK-6]
          Length = 442

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 158/431 (36%), Gaps = 56/431 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----GK 55
           IVIG G AG EAA   A  G    L           HKT     + C+  +G      G 
Sbjct: 5   IVIGAGLAGSEAAYRLACEGIKVLLYEMRPKVQTPAHKTDKFAELVCSNTLGSTELTSGS 64

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E++ L  L+   +  A +              G     DREL+   + +++ +  
Sbjct: 65  GLLKAEMEILGSLVLEASRYAYV------------PAGSALGVDRELFSEYITQKLTNHP 112

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           N+++I+ EV     ++ ++             +T  LT+      +  +   +       
Sbjct: 113 NIEIIREEVKKIPRDQVVVV------------ATGPLTSDDLALDIKELVNQEYLYFYDA 160

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            SP     +      F   R   G              TE+++         F  + +  
Sbjct: 161 ISPIVEADSVDFSKGFWGSRYGKGGE-----DYFNCTLTEEEY-------RVFYQELLKA 208

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
           +++           +      I+  A        +GP     + DK    GER    + L
Sbjct: 209 QKVATKDF--EKAVYFEGCMPIEELAERGYKTLLFGPMKPVGLWDKTK--GERPFAVVQL 264

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KELFPT 354
             E     ++   G  T +    Q + +R IP L     +R G      +I   K L P 
Sbjct: 265 RKENREGTLLSLVGFQTRMTYSEQKRVLRLIPCLRNAVFVRLGSMHRNTFIQSNKVLTPF 324

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  +K+  +F AGQI G  GY  +AA G++AGIN+ R    L  + +   ++ +G +I  
Sbjct: 325 LNMRKMENIFFAGQITGVEGYIASAATGILAGINAGRLLKGLKPV-YPPEETMLGSLIKY 383

Query: 415 LTSKG-VLEPY 424
           +T+K   L+P 
Sbjct: 384 ITTKEGQLQPM 394


>gi|326538632|gb|ADZ86847.1| gid protein [Brucella melitensis M5-90]
          Length = 517

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 151/474 (31%), Gaps = 61/474 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-----TPIGMKLGCIGERR 460
           +  +T   ++      T     + S +P N +  L      P        G+ R
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKER 443


>gi|323140525|ref|ZP_08075452.1| tRNA:m(5)U-54 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
 gi|322414977|gb|EFY05769.1| tRNA:m(5)U-54 methyltransferase [Phascolarctobacterium sp. YIT
           12067]
          Length = 442

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 164/488 (33%), Gaps = 69/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AGCEA     + G    L           HKT+    + C+ ++        
Sbjct: 6   VHVIGAGLAGCEAVTQLTRHGIPVILYEMRPVKSDEAHKTAYFAELVCSNSLRAANIENA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+ + AD                  G     DR+ +  A+   + + 
Sbjct: 66  VGLLKEEMRRLGSLIMQKADEH------------QVPAGGALAVDRDGFAAAVTEAVKAN 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + VI  EV    + +  +             ++  LT+      +  + +        
Sbjct: 114 PLVTVIHEEVTDLESLEGTVI-----------VASGPLTSDALFADIKKLLQADYLHFFD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G    L+       +    F +      S       
Sbjct: 163 AAAPIVTADSLDYDKVYRASRYDKGGADYLNCP-FYTKEEYVAFWEALCNAESAPVKDFE 221

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
           +   E                 I+  A    D   +GP     + D   R G+     + 
Sbjct: 222 HDVFEA-------------CMPIEEMAARGEDTMRFGPLKPVGLIDP--RNGKEAYAVVQ 266

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +    IPGLE    +R G   +  Y+N P+ L  
Sbjct: 267 LRQDNAAASLYNLVGFQTHLKWPEQRRVFGMIPGLENAEFVRFGVMHKNTYLNSPQLLDK 326

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
               +     + AGQ+ G  GY E+AA GL+AG+ +AR   +L  +      ++ G + +
Sbjct: 327 HFNLRNNKRFYFAGQMTGVEGYVESAASGLMAGLAAARAVLELPEVELPEVTAH-GALAN 385

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYN 472
            +++  +               + +P N +  L  P+ +++    E+  +  A+ ++  +
Sbjct: 386 YISNPAIE--------------NFQPMNINFGLIPPLTVRIRKKREKNAQIAARALEALD 431

Query: 473 FLRSLLKS 480
                LK+
Sbjct: 432 GFLPALKT 439


>gi|295688524|ref|YP_003592217.1| gid protein [Caulobacter segnis ATCC 21756]
 gi|295430427|gb|ADG09599.1| gid protein [Caulobacter segnis ATCC 21756]
          Length = 475

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 158/489 (32%), Gaps = 56/489 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGSMSCNPAIGGLGKGHLVREI 62
           V V+GGG AG EAA   A+ G    L   +        +        +  +   +  R  
Sbjct: 15  VHVVGGGLAGSEAAWQIAQSGVPVILHEMRKDDATGKVVTDAHQTDGLAEMVCSNSFRSD 74

Query: 63  D----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           D    A+  L   +     +     +  + PA  G     DR+ +   + R +     + 
Sbjct: 75  DWQFNAVGLLHAEMRKLDSLIMACADQHQVPA--GGALAVDRDGFSAEVTRRLSQHPLVT 132

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           +++ E+AG    +     +              LT+    + ++ +      +     +P
Sbjct: 133 IVREEIAGLPPAEWDNVVVAT----------GPLTSPALAQAILDLTGEGQLSFFDAIAP 182

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                +  M   +   R     P       I    T+ Q+  E  I       K   ++ 
Sbjct: 183 IIHFDSINMDVAWRQSRYDKEGPGGDAAAYINCPMTKDQY--EAFIDALLAGPKSEFKEW 240

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFL 295
           E            ++ E          +   +GP     +    D +V    +    + L
Sbjct: 241 ENVPYFDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNPRDPLV----KAYAIVQL 289

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L   +Q +  R IPGLE     R G      +IN PK L  +
Sbjct: 290 RQDNALGTLWNMVGFQTKLKHGVQAETFRMIPGLENAQFARLGGLHRNTFINSPKLLDKS 349

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  K    L  AGQ+ G  GY E+AA GL+ G  +A        I      + +G +++ 
Sbjct: 350 LRMKAQPRLRFAGQVTGVEGYVESAAMGLLTGRFAAADRKG-APIDAPPPTTALGALVEH 408

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFA 465
           +T   +               S +P N +  L P          G K+      R K+  
Sbjct: 409 ITGGHLD--------AGVGPGSFQPMNINYGLLPPLETPKVDEDGKKIPLKERGRAKKRL 460

Query: 466 KYIQEYNFL 474
             ++    L
Sbjct: 461 MSLRALKDL 469


>gi|306843793|ref|ZP_07476391.1| gid protein [Brucella sp. BO1]
 gi|306275871|gb|EFM57587.1| gid protein [Brucella sp. BO1]
          Length = 466

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 97/494 (19%), Positives = 158/494 (31%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G    +   + I              LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLPPAEWGTAIIAT----------GPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLGQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|257463633|ref|ZP_05628024.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
 gi|317061185|ref|ZP_07925670.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
 gi|313686861|gb|EFS23696.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D12]
          Length = 435

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 175/487 (35%), Gaps = 71/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL---- 53
           +VIV+G G AG EAA   AK G S  L           H       + C+ ++GG     
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGISVQLYEMKGQKKTEAHHYDYFAELVCSNSLGGNHLGN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD            K PA +      DR  +   +   + +
Sbjct: 64  ASGLMKEELRFLDSLLIRVADET----------KVPAGQALA--VDRHEFSEKVTEILRT 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+ +++ E      ++ ++             ++  LT+    + ++ I         
Sbjct: 112 MENITIVEEEFTKIPKDQYVLI------------ASGPLTSELLFKELLDITGEDSLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  SL +  M   +   R   G     +G+ I    T++++        +F T+ I
Sbjct: 160 DAAAPIVSLESIDMTSAYFQSRYGKG-----EGEYINCPMTKEEY-------EAFYTELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              +          E        ++  A+       +GP     + +   R    +   +
Sbjct: 208 QAERAPLKKF--EEEKLFDACMPVEKIAMSGEKSLLFGPLKPKGLTNP--RTNRMDYAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            L  +     +    G  T L    Q +    IP L++ + +R G      ++N  +L  
Sbjct: 264 QLRQDDKEGKLYNMVGFQTNLKWGEQKRVFSMIPALKQADFLRYGVMHRNTFLNSTKLLK 323

Query: 354 T-LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           + L  K    L+ AGQI G  GY  A + G +A IN A K    +        + IG +I
Sbjct: 324 SDLALKSQENLYFAGQITGGEGYVAAISTGCIAAINIANKLQGKEAFILEDVTA-IGALI 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +T               E +   +P   +  +    ++     ++R++ F        
Sbjct: 383 RYIT---------------EEKKKFQPMGPNFGII-RSLEGKKFRDKRERYFEMSRLSIE 426

Query: 473 FLRSLLK 479
           +L++ +K
Sbjct: 427 YLKNKIK 433


>gi|291557092|emb|CBL34209.1| tRNA:m(5)U-54 methyltransferase [Eubacterium siraeum V10Sc8a]
          Length = 453

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 148/476 (31%), Gaps = 56/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V VIG G AG EAA   A  G    L   K               L   + ++  D   A
Sbjct: 20  VTVIGAGLAGVEAAWALANRGFHVRLCEMKPEKYSPAHKYKGFAELVCSNSLKSADTASA 79

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +  R     K  A  G     +R  +  A+   I +   ++++ GE+
Sbjct: 80  CGMLKEEMRYMNSVTMRAAEKTKVGA--GGALAVNRTEFSDAVTETITNHPYIEIVNGEI 137

Query: 125 AGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
             F     +I +  +  D   I    +    G  L            +     +P  +  
Sbjct: 138 TEFPKSNTVIATGPLTSD---IFAEKIQERCGNPL------------SFYDAAAPIVTAE 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   F   R   G     +   I    T++++  E         + +  +  E    
Sbjct: 183 SIDMSLAFFATRYDKG-----EADYINCPMTKEEY--EAFYNELVNAESVQLKSFENLKV 235

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ +    S  Y              + D   R   R    + L  E     
Sbjct: 236 YEGCMPVEVLAKRGIESVRYGC-------MKPVGLIDP--RTDRRPYAVVQLRKENNEGT 286

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +    I GL+    +R G      ++N P  L           
Sbjct: 287 LYNLVGFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDN 346

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ+ G  GY E+AA G++AGIN AR  +    +    T      +   ++++    
Sbjct: 347 IYFAGQMTGVEGYVESAASGIIAGINLARALDGEKPLELPET-CMTAALARHISTENKD- 404

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                          +P  A+  + P   +   I +++ +      +    +R  L
Sbjct: 405 --------------FQPMGANMGILPPLPER--IKDKKLRYRTIADRGLEDMRKAL 444


>gi|297617130|ref|YP_003702289.1| gid protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144967|gb|ADI01724.1| gid protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 439

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 169/480 (35%), Gaps = 52/480 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R+ +V+V+GGG AGCEAA   A+ G    L   +   +        +  L   + ++ 
Sbjct: 1   MTRTEEVMVVGGGLAGCEAAYRIAESGIRVRLCEMRPVRMTPAHQTGYLAELVCSNSLKS 60

Query: 62  ID---ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            D   A   L   +     +        + PA  G     +REL+   +   I S   + 
Sbjct: 61  EDPATAQGLLKAEMRLLGSLLLDCAEDCRVPA--GSALAVERELFAAKVTGIIRSHPLIR 118

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           V + E+     E   I             +T  LT+      +  +            +P
Sbjct: 119 VEEREITCIPEEGITII------------ATGPLTSDRLAAWIRDVTGEDNLYFYDAVAP 166

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
             +  +      F   R   G    L         TE+++   R        D      +
Sbjct: 167 VVTADSLDFSKIFRGSRYGKGGDDYL-----NCPLTEEEY--RRFYRALVEADVHEGHPV 219

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           + G+         +I       A        +GP     +E      G+R    + L  E
Sbjct: 220 DKGLFFEGCMPIEVI-------ARRGEAALCFGPMRPVGLESGD---GKRVHAVVQLRQE 269

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                +    G  T L  + Q +  R IPGLEK   +R G      YIN P+ L PTL  
Sbjct: 270 NREGTLYSLVGFQTRLRFKEQERVFRLIPGLEKAEFVRYGVMHRNTYINSPRLLEPTLAF 329

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
               G+F AGQI G  GY E+AA G++AG+N+ R +     +   RT + IG +   +TS
Sbjct: 330 TPKDGVFFAGQITGCEGYMESAATGILAGLNAVRLAAGKPLLVLPRT-TMIGALCHHITS 388

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                               +P NA+  L P   +   +  RR++  A   +    L+  
Sbjct: 389 ASGD--------------RFQPMNANFGLLPPLEE--KVKGRRERYLAYSKRSLRSLQEF 432


>gi|150396397|ref|YP_001326864.1| tRNA (uracil-5-)-methyltransferase Gid [Sinorhizobium medicae
           WSM419]
 gi|166989566|sp|A6U8P9|TRMFO_SINMW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|150027912|gb|ABR60029.1| gid protein [Sinorhizobium medicae WSM419]
          Length = 480

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/497 (19%), Positives = 159/497 (31%), Gaps = 78/497 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT ++  + C+ +         
Sbjct: 11  VHVIGGGLAGSEAAWQIAEAGVPVILHEMRGVRGTDAHKTDSLAELVCSNSFRSDDATSN 70

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     ++ R AD        LN        G     DRE +  A+   I +
Sbjct: 71  AVGVLHAEMRLAGSIIMRCAD--------LN----QVPAGGALAVDREGFAEAVSAAIAA 118

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTGTF------LRGV 161
              + V++ E+ G   ++  ++ I             IR  T       F      +   
Sbjct: 119 HPLITVLREEIRGLPPKEWDLAIIATGPLTAPDLADAIRAETGADALAFFDAIAPIVHAD 178

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                +     R            ++              A + G    + + E     +
Sbjct: 179 TIDMDICWHQSRYDKVGPGGTGKDYINCPLTQEEYNAFIDALIAGDKTGFKEWEGTPYFD 238

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             +P   M ++                                 +   +GP     + + 
Sbjct: 239 GCLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNA 267

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
                 +    + L  +     +    G  T L    Q +  R IPGLEK    R G   
Sbjct: 268 -HNPSVKPYAVVQLRQDNALGTLYNMVGFQTKLKYGAQGEVFRMIPGLEKAEFARLGGLH 326

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              YIN P  L  +L  K  +GL  AGQI G  GY E+A+ GL+AG  +A +        
Sbjct: 327 RNTYINSPTLLDQSLTLKSRAGLRFAGQITGCEGYVESASIGLLAGRFAAAERKGASPAI 386

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
              T ++ G +++ +T   ++      +     + S +P N +  L P            
Sbjct: 387 PPVTTAF-GALLNHITGGHIV------SDDEPGKRSFQPMNVNFGLFPPLDPGALTRPEG 439

Query: 461 QKRFAKYIQEYNFLRSL 477
            KRF    +     +++
Sbjct: 440 AKRFRGKEKASAKKQAM 456


>gi|86749845|ref|YP_486341.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           HaA2]
 gi|123292561|sp|Q2IWI0|TRMFO_RHOP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|86572873|gb|ABD07430.1| gid protein [Rhodopseudomonas palustris HaA2]
          Length = 482

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 151/446 (33%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V VIGGG AG EA    A+ G    L   +            +  L   +  R  DA   
Sbjct: 16  VHVIGGGLAGSEATWQLARAGVRVVLHEMRPHRSTEAHKTDGLAELVCSNSFRSDDAANN 75

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ + E
Sbjct: 76  AVGLLHAEMRRLGSLVMRAADANQVPA--GGALAVDRDGFSAAVTKALAEHPLIEIRREE 133

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG   E            ++I   T  LT+      V  +      A     +P     
Sbjct: 134 IAGLPPEDW---------GNVIVA-TGPLTSAALAEAVRALTDESALAFFDAIAPIVHRD 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  +  +      DK+  +  E    
Sbjct: 184 SIDMSIAWFQSRYDKAGPGGSGADYLNCPMNREQY--DAFVDALIAGDKVDFKDWEKDTP 241

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 242 YFD------GCLPIEVMAERGRETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNKLGT 294

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    
Sbjct: 295 LFNMVGFQTKLNYAAQQRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDAGLRLRAAPR 354

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+A  GLVAG+++A  +          T + +G ++  +T   +  
Sbjct: 355 LRFAGQMTGCEGYVESAGIGLVAGLSAAADALGRSMTTPPPTTA-LGALLGHITGGHIE- 412

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 413 ------TIDAGPRSFQPMNINFGLFP 432


>gi|118589134|ref|ZP_01546541.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
 gi|118438463|gb|EAV45097.1| glucose-inhibited division protein A [Stappia aggregata IAM 12614]
          Length = 472

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/497 (18%), Positives = 162/497 (32%), Gaps = 43/497 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + +IGGG AG EAA   A+ G+   L   +            +  L   +  R    E +
Sbjct: 4   IHIIGGGLAGSEAAWQIAQAGSPVVLHEMRPVRKTDAHQTDGLAELVCSNSFRSDDSEQN 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  +   +     +     +  + PA  G     DR+ +  A+   + +  N+ + + E
Sbjct: 64  AVGLIHHELRQLGSLIMSCADAHQVPA--GSALAVDRDGFSNAVTSALETHPNVTISREE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E      +++            LT+      ++        A     +P     
Sbjct: 122 VAGLPPEDWD--KVIIATG--------PLTSPALSEAILEKSGEDALAFFDAIAPIVHFD 171

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  +   +   R     P       +       Q+  E  I      +    ++ E    
Sbjct: 172 SVDLSKAWFQSRYDKVGPGGNGKDYLNCPLDRDQY--EAFIDALLAGETADFKEWE---- 225

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                T        I+  A    +   +GP     + +       +    + L  +    
Sbjct: 226 ---ENTPYFDGCLPIEVMAARGRETLRHGPMKPMGLTNA-HNPHVKAYAVVQLRQDNALG 281

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q    R IPGLE     R G      ++N PK L  TL  K   
Sbjct: 282 TLYNMVGFQTKLKYGAQADIFRMIPGLENAQFARLGGLHRNTFLNSPKVLDGTLRLKADP 341

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L  AGQI G  GY E+A+ G +AG+ +  ++   D +    T +  G ++  +T   + 
Sbjct: 342 RLRFAGQITGCEGYVESASVGCLAGLFAVLEARGQDIVPPPATTAM-GALLGHITGGHI- 399

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFAKYIQEYN 472
                    A    S +P N +  L P          G +L    + R K+ A   +   
Sbjct: 400 ----TRDEGAGKPGSFQPMNVNFGLFPEVDAPSKDESGKRLKGKDKSRAKKLAMTNRAKA 455

Query: 473 FLRSLLKSLVLTSKNLS 489
              +   +L    +   
Sbjct: 456 DFTNWQTTLGFVKQAAE 472


>gi|323341689|ref|ZP_08081922.1| tRNA:M(5)U-54 methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464114|gb|EFY09307.1| tRNA:M(5)U-54 methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 445

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 150/449 (33%), Gaps = 59/449 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIG 51
           +I +   V VIG G AG EAA   AK G    L+  +               + C+ +  
Sbjct: 15  VIMKQPQVRVIGAGLAGSEAAYQLAKRGFVVELVEMRPVKMTPAHVTEHFAELVCSNSFR 74

Query: 52  ----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+   D ++ + AD   +              G     DR  +   +
Sbjct: 75  SDDLNNAVGLLKEEMRRFDSIIMKSADEHRL------------PAGSALAVDRVGFSEKV 122

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             +I   +N+ V   E+   +    I+             +T  LT+  F + +++    
Sbjct: 123 SEKISKMDNIIVSNREMTELDDLPTIV-------------ATGPLTSDNFSKYLMNYLGQ 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P  S+        +   R   G         I       QF  E      
Sbjct: 170 SEMYFYDAIAPIVSVDGINFDIAYRKSRYDKGDG----QDYINCPMDRDQF--EAFHRAI 223

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              ++   R  E            ++       A        +GP     +E      G 
Sbjct: 224 LEAEEAPMRDFEDVKVFEGCMPVEVM-------ARRGIKTMLFGPLKPVGLEKPD---GT 273

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI- 346
           R    + L  +     +    G  T L    Q + I+ IPGLE   I+R G      +I 
Sbjct: 274 RPYAVVQLRQDNAAGSLYNLVGFQTRLKWGDQKRIIQMIPGLENAVIVRYGVMHRNTFIK 333

Query: 347 NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
           +P  L    ++K    LF AGQ++G  GY E+AA GLVA +N A +  K + +     ++
Sbjct: 334 SPLLLNHHYQSKTQPSLFFAGQVSGVEGYVESAASGLVAALNMA-QFLKQEPLIDLPQET 392

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
            +G M   ++      P +     A + I
Sbjct: 393 VMGSMAYYISHAN---PSQFQPMNANFGI 418


>gi|294102503|ref|YP_003554361.1| gid protein [Aminobacterium colombiense DSM 12261]
 gi|293617483|gb|ADE57637.1| gid protein [Aminobacterium colombiense DSM 12261]
          Length = 438

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 181/485 (37%), Gaps = 66/485 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           + RS +++++GGG AG EAA   A+ G S  L+          H+T  +G + C+ ++G 
Sbjct: 1   MRRSDEILIVGGGLAGSEAAWQLAQRGYSVCLVEMRPVATTPAHQTDMMGELVCSNSLGA 60

Query: 53  L----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L+ L+   AD +                G     DR ++   + 
Sbjct: 61  DNLTSPAGILKGELRYLNSLIMEAADHS------------SVPAGKALAVDRNVFAGYIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           +++     + + + E+     E  II             +T  LT+  F   +  +   +
Sbjct: 109 KKLSGHPQIRIERREITELPEEPAII-------------ATGPLTSPIFAERLRQVTGQE 155

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             +     +P        M   +  GR             I     E+++         F
Sbjct: 156 YFSFFDAIAPVVFYDTIDMNKAYQGGRYGQ------QADYINCPMNEEEY-------IKF 202

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               +T  Q        ++         ++  A    D   +GP     + +     G  
Sbjct: 203 CQALLTAEQAPRHEFEKDVRYFE-GCLPVEVIASRGIDTLRFGPLRPVGLPNP--STGAE 259

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +  +  +    G  T+L    Q++  R IPGLE     R G      Y+N 
Sbjct: 260 PYAVVQLRQDNADGTLFNLVGFQTSLKWGEQNRVFRMIPGLENAEFARYGVMHRNIYVNA 319

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           PK L  +L  +    LFLAGQI G  GY E+ A GLVAG++ A  +  L    + + ++ 
Sbjct: 320 PKVLDGSLRLRGSKALFLAGQITGVEGYLESTAMGLVAGLHVAFCAAGLQIPLWPK-ETA 378

Query: 408 IGVMIDDL--TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           IG ++  L  T   V  P  +        + + P + D ++ P  ++   +GER  +   
Sbjct: 379 IGSLLRYLAETDPKVFHPMNV-------NLGIFP-SLDVKIRPKSLRCQKVGERALRALE 430

Query: 466 KYIQE 470
           ++ + 
Sbjct: 431 EFDKN 435


>gi|320161094|ref|YP_004174318.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Anaerolinea thermophila UNI-1]
 gi|319994947|dbj|BAJ63718.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Anaerolinea thermophila UNI-1]
          Length = 456

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 166/471 (35%), Gaps = 44/471 (9%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGR 71
            AG EAA  AAK G    L   +            +G L   + +       A   L   
Sbjct: 11  LAGSEAAWQAAKAGLKVDLYEMRPQKSTGAHSTSFLGELVCSNSLGSALVDRASGLLKEE 70

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
           +     +   V      PA  G     DRE++   +  +I S  N+ VI+ E     +  
Sbjct: 71  LRLLGSLLLSVAEECALPA--GGALAVDREMFAQTITEKIESHPNIRVIREEYPTIPSRP 128

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
            II             ++  LT+ T  + +  +   +        +P        M+  F
Sbjct: 129 AII-------------ASGPLTSPTLSKAIQELTGTEHLFFFDAIAPIVRAETINMEKAF 175

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI---TRTNLE 248
              R + G     +G  I    T +++  E+ I     +++I  R+ E  I    R    
Sbjct: 176 RASRYQRGV--IEEGDYINCPFTREEY--EQFIEALLNSERIPLREFEEEIKHGVRAGAH 231

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
            +      I+  A    +  ++GP     + D     G+R    + L  + L   +    
Sbjct: 232 EYFEGCLPIEVLAARGKEALAFGPMRPIGLRDP--HTGKRPYAVVQLRQDNLAGTLYNLV 289

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +I +P  L PTL+ +K S LF AG
Sbjct: 290 GFQTNLTFPEQRRVFRMIPGLENAEFVRYGQMHRNTFIASPALLLPTLQFRKRSDLFFAG 349

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY    A GL+AGIN+AR       +    T + +G +   +T   + +     
Sbjct: 350 QITGVEGYMGNIATGLLAGINAARLLKGETPVSLPET-TMLGALCHYVTHASLKD----- 403

Query: 428 TSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                     +P  A+  + P +        +R  +   + +         
Sbjct: 404 ---------FQPMKANFGILPALPDPAPGKSQRALQYVERALNNLRKWAEK 445


>gi|291542639|emb|CBL15749.1| tRNA:m(5)U-54 methyltransferase [Ruminococcus bromii L2-63]
          Length = 435

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 164/488 (33%), Gaps = 76/488 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           + VIG G AGCEAA   A  G    L           H T     + C+ ++        
Sbjct: 3   INVIGAGLAGCEAAMQIASCGIKVHLYEMKPNKKTPAHHTEKYAELVCSNSLKAMRVESA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD  + + ADA           K PA  G     DR+++       I S 
Sbjct: 63  AGLLKEEMRRLDSFLMKCADAC----------KVPA--GGALAVDRDIFSSLATEGIKSC 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           E ++V + EV     ++  +             ++  LT+       I        +   
Sbjct: 111 ELIEVYEEEVCEIPKDEITVV------------ASGPLTSEPLAE-YIRGMFGSSLSFFD 157

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +  M++ F   R   G         I     ++++        +F    I 
Sbjct: 158 AAAPIVTAESIDMEYAFCASRYDKGDGD----DYINCPMNKEEY-------ETFYNALIL 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +        +          ++  A        +GP     + +   + G R    + 
Sbjct: 207 AERAPLHDCDVSNPKVYEGCMPVEVMAQRGEGTLRFGPMKPVGLVNP--KTGHRPWAVLQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E    ++    G  T L    Q +    IP L   + +R G      +++ P+ L  
Sbjct: 265 LRKENKAGNMYNLVGFQTNLKFPEQKRVFSLIPALHNADFVRYGVMHRNTFLDSPRILNS 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
               K    LF AGQI G  GY E+AA G++AGIN+ R +     I     D+ IG +  
Sbjct: 325 DFSVKDNHSLFFAGQITGVEGYMESAASGIMAGINACRVAEGKSTITLPN-DTMIGALSA 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            ++                       D++  +  P+G   G + E   +   K  +   +
Sbjct: 384 YIS-----------------------DSSVKKFQPMGANFGVLPELENRPRDKKERGAAY 420

Query: 474 LRSLLKSL 481
               LKSL
Sbjct: 421 SARALKSL 428


>gi|291530277|emb|CBK95862.1| tRNA:m(5)U-54 methyltransferase [Eubacterium siraeum 70/3]
          Length = 453

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 147/476 (30%), Gaps = 56/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V VIG G AG EAA   A  G    L   K               L   + ++  D   A
Sbjct: 20  VTVIGAGLAGVEAAWALANRGFHVRLCEMKPEKYSPAHKYKGFAELVCSNSLKSADTASA 79

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +  +     K  A  G     +R  +   +   I +   ++++ GE+
Sbjct: 80  CGMLKEEMRYMNSVTMKAAEKTKVGA--GGALAVNRTEFSDTVTEMITNHPYIEIVNGEI 137

Query: 125 AGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
             F     +I +  +  D   I    +    G+ L            +     +P  +  
Sbjct: 138 TEFPKSDTVIATGPLTSD---IFAEKIQERCGSPL------------SFYDAAAPIVTAE 182

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   F   R   G    ++       K E +     L+      + +  +  E    
Sbjct: 183 SIDMSLAFFATRYDKGEADYINCPM---TKEEYEAFYNELVNA----ESVQLKSFENLKV 235

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ +    S  Y              + D   R   R    + L  E     
Sbjct: 236 YEGCMPVEVLAKRGIESVRYGC-------MKPVGLIDP--RTDRRPYAVVQLRKENNEGT 286

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +    I GL+    +R G      ++N P  L           
Sbjct: 287 LYNLVGFQTNLKFGEQKRVFSMITGLQNAEFVRYGVMHRNTFLNSPGLLDKNFRLIDSDN 346

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           ++ AGQ+ G  GY E+AA G++AGIN AR  +    +    T      +   ++++    
Sbjct: 347 IYFAGQMTGVEGYVESAASGIIAGINLARALDGEKPLELPET-CMTAALARHISTENKD- 404

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                          +P  A+  + P   +   I +++ +      +    L+  L
Sbjct: 405 --------------FQPMGANMGILPPLPER--IKDKKLRYRTVADRGLEDLKKAL 444


>gi|205830468|sp|A9VXT4|TRMFO_METEP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 474

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 155/448 (34%), Gaps = 34/448 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G +  L   +            +  L   +  R  DA   
Sbjct: 5   IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 64

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 65  AVGLLHQEMRSLDSLIMRTADAHQVPA--GGALAVDREGFSRAVTAALEDHPNITILREE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +   +  A     +P     
Sbjct: 123 VAGLPPEDW---------GSTILA-TGPLTSPALAEAVGTLTGRESLAFFDAIAPIVHRD 172

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K   ++ E    
Sbjct: 173 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTAFKEWEASTP 230

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 231 YFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 283

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    
Sbjct: 284 LFNMVGFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQ 343

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  
Sbjct: 344 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVE- 401

Query: 423 PYRMFTSRAEYR--ISLRPDNADNRLTP 448
                T  AE     S +P N +  L P
Sbjct: 402 ----ATEEAERNAPRSFQPMNVNFGLFP 425


>gi|303249333|ref|ZP_07335563.1| gid protein [Desulfovibrio fructosovorans JJ]
 gi|302489265|gb|EFL49225.1| gid protein [Desulfovibrio fructosovorans JJ]
          Length = 439

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 162/471 (34%), Gaps = 47/471 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + +IGGG AGCE A   A+ G ++ +   K +       +P +  L   + +R  + +  
Sbjct: 3   IAIIGGGLAGCECALALARAGVASTIFECKPAHFSPAHVSPGLAELVCSNSLRSDEPVTA 62

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           +     + A +   V+   +  A   G     DRE +  AM   I ++  + + + E+  
Sbjct: 63  VGLLKVEMATLGSAVIEAARETAVPAGKALAVDREKFSAAMTARIENEPLVTLTRREIMS 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                  ++         +  +   L T      +      +        +P  +  +  
Sbjct: 123 L--SDPALTGFET-----VVVAAGPLATDRLATSLCETIGQESLYFYDAIAPIVTTESVD 175

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M+  F   R + G     +G        E Q+  +  +       K+ +R+ E  +    
Sbjct: 176 MEQAFWQSRWQEG-----EGDYCNCPLDEAQY--KAFVAELVAARKVPSREFEKELHFEG 228

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                 + E  +          ++GP     + D   + G R    + L PE +    + 
Sbjct: 229 CLPIEAMAERGER-------TLAFGPMKPIGLTDP--KTGRRPYAVVQLRPENVAKSTLN 279

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  R IP L      R G      ++N P+ L   LE     G +L
Sbjct: 280 LVGFQTKLVYGEQERIFRMIPALHAAEFTRLGSIHRNTFVNAPRVLNDRLELLARPGTYL 339

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+AA GL  G+    +  +   I      + +G ++  L +        
Sbjct: 340 AGQITGVEGYVESAACGLWLGVQLGARLGRGVEIAPPPVVTALGALLGHLRTPA------ 393

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                       +P N +  LTP         E R K+  + +      + 
Sbjct: 394 ---------KKFQPSNVNFGLTPPL-------EERMKKANRKLAYPQRAQQ 428


>gi|167647664|ref|YP_001685327.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter sp. K31]
 gi|205830329|sp|B0T866|TRMFO_CAUSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|167350094|gb|ABZ72829.1| gid protein [Caulobacter sp. K31]
          Length = 480

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/510 (19%), Positives = 164/510 (32%), Gaps = 82/510 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------------------THKTSTIGSMSC 46
           + VIGGG AG EAA   A+ G    L                       H+T  +  M C
Sbjct: 11  IHVIGGGLAGSEAAWQIAQAGVPVVLHEMRRDLPSSSGAVGPTKVRTDAHQTDGLAEMVC 70

Query: 47  NPAIGG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           + +           G L  E+  LD L+   AD                  G     DR+
Sbjct: 71  SNSFRSDDWQFNAVGLLHAEMRKLDSLILSAADQH------------QVPAGGALAVDRD 118

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            +   + R I +   + + + EVAG   E      +              LT+      +
Sbjct: 119 GFSAEVTRRIEAHPLITIEREEVAGLPPEDWDSVVVAT----------GPLTSPALADAI 168

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           + +      +     +P   + +  M   +   R     P       I     + Q+  E
Sbjct: 169 LELSGEGQLSFFDAIAPIIHVESIDMDIAWRQSRYDKEGPGGDAAAYINCPMNKAQY--E 226

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE-- 279
             I       K   +  E  +   +          I+  A    +   +GP     +   
Sbjct: 227 AFIDALLEGPKAEFKDWE-HVPYFD------GCLPIEVMAERGRETLRHGPMKPVGLTNP 279

Query: 280 -DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
            D  V    +    + L  +     +    G  T L    Q +  R IPGL+     R G
Sbjct: 280 RDPTV----KAYAIVQLRQDNALGTLWNMVGFQTKLKHGAQAEVFRMIPGLQNAQFARLG 335

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +IN P+ L  +L  K    L  AGQ+ G  GY E+AA GL+AG  +A +     
Sbjct: 336 GLHRNTFINSPRLLDRSLRMKVAPRLRFAGQMTGVEGYVESAATGLLAGRFAAAERLGKT 395

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------- 449
                 T + +G ++D +T   +          A  + S +P N +  L P         
Sbjct: 396 LDAPPPTTA-LGALVDHVTGGHIE-------GEALGKTSFQPMNINYGLLPPTETPKVGD 447

Query: 450 -GMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            G+K+      R K+    ++    L   +
Sbjct: 448 DGVKIPMKERGRAKKRLMSLRALADLDQWM 477


>gi|282856244|ref|ZP_06265527.1| tRNA:M(5)U-54 methyltransferase [Pyramidobacter piscolens W5455]
 gi|282586003|gb|EFB91288.1| tRNA:M(5)U-54 methyltransferase [Pyramidobacter piscolens W5455]
          Length = 445

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/495 (20%), Positives = 168/495 (33%), Gaps = 76/495 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V++ GGG AG EAA    + G    +           H+T  +G + C+ ++G       
Sbjct: 4   VVIAGGGLAGSEAAWQLVRRGIPVHMFEMRPVVSSPAHRTDKLGELVCSNSLGSDSGDSA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ ALD L+ + ADA                 G     DRE +   +   ++  
Sbjct: 64  AGLLKEELRALDSLIMKSADAH------------SVPAGKALAVDRERFSQFITDTLMKD 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               + + EVA       II             ++  LT+      +  +          
Sbjct: 112 PLFTLTRREVAEIPDGPCII-------------ASGPLTSPALAAKLQTLFGQDYLYFYD 158

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P   L +  M   +   R   G      G  I     E+Q+        +F    I 
Sbjct: 159 AVAPVIELESVDMSVAYRKDRYADGEG----GDYINCPMDERQY-------QTFYEALIA 207

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +            +      ++  A    D   +GP     + D   R G+R    + 
Sbjct: 208 AERAPLH-DFEGKAEYFEGCMPVEAIASRGRDTLRFGPLRPVGLNDP--RTGKRPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           +  +     +    G  T L    Q +  R IPGLE+   +R G      Y++ P+ L  
Sbjct: 265 IRQDNAEGTLYNLVGFQTNLRWGEQQRVFRLIPGLERAEFVRMGVMHRNIYVDAPRCLDG 324

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  + +  LFLAGQ+ G  GY E+ A G VA +      N L    +   +S IG ++ 
Sbjct: 325 CLRPRGMESLFLAGQMTGVEGYVESTAMGAVAALGVFSFLNGLPQPQWPV-ESAIGALLF 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L              +        P NA+  + P    L    + R++R  K +     
Sbjct: 384 RL--------------KDATNPRFAPTNANMGIFP---PLDEKIKSRKERHEKILS---- 422

Query: 474 LRSLLKSLVLTSKNL 488
            R  LK L   + + 
Sbjct: 423 -RGRLKFLQFKANSA 436


>gi|257452339|ref|ZP_05617638.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
 gi|317058882|ref|ZP_07923367.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
 gi|313684558|gb|EFS21393.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/492 (20%), Positives = 173/492 (35%), Gaps = 83/492 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++GG     
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIPVRLYEMKQQKKTEAHHYDYFAELVCSNSLGGDHLGN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD            K PA +      DR  +   + + + +
Sbjct: 64  ASGLMKEELRLLDSLLVRVADET----------KVPAGQALA--VDRHGFSEKITQILRN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+ +++ E      ++ ++             ++  LT+      ++ +   +     
Sbjct: 112 MENITIVEEEFKEIPKDQYVLI------------ASGPLTSDALFTELLTLTGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  SL +  M   +   R   G     +G+ I    T +++        +F T+ I
Sbjct: 160 DAAAPIVSLESIDMTSAYFQSRYGKG-----EGEYINCPMTREEY-------EAFYTELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              +          E        I+  A+       +GP     + +   +  + +   +
Sbjct: 208 RAERAPLKKF--EEEKLFDACMPIEKIAMSGEKSLLFGPLKPKGLINP--KTDKMDHAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            L  +  +  +    G  T L    Q +    IP L +   IR G      +IN  +L  
Sbjct: 264 QLRQDDKDGKLYNMVGFQTNLKWGEQKRVFSMIPALRQAEFIRYGVMHRNTFINSTKLLE 323

Query: 354 -TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K  + L+ AGQI G  GY  A A G +A IN A K    +        + IG +I
Sbjct: 324 KDLSLKTQNNLYFAGQITGGEGYVAAMATGCMAAINIANKLQGKEPFILEDVTA-IGALI 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI----GERRQKRFAKYI 468
             +T +                          +  P+G   G I    G+R + +  +Y+
Sbjct: 383 RYITEE------------------------KKKFQPMGPNFGIIRSLEGKRIRDKKERYL 418

Query: 469 QEYNFLRSLLKS 480
           +        LK+
Sbjct: 419 EMSRIAIEYLKN 430


>gi|146340957|ref|YP_001206005.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium sp. ORS278]
 gi|205830327|sp|A4YV54|TRMFO_BRASO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146193763|emb|CAL77780.1| conserved hypothetical protein; putative glucose-inhibited division
           protein (gid) [Bradyrhizobium sp. ORS278]
          Length = 465

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 152/446 (34%), Gaps = 40/446 (8%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA----LD 66
           IG G AG EAA   A+ G    L   +   +           L   +  R  DA    + 
Sbjct: 2   IGAGLAGSEAAWQLAEAGIDVVLHEMRPDRMTEAHRTATPAELVCSNSFRSDDAANNAVG 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +     +  R  +  + PA  G     DR+ +  A+   +     +++ +GE+ G
Sbjct: 62  LLHAEMRRLGSLIMRAADANQVPA--GGALAVDRDSFAAAVATALQGHPRIELRRGEITG 119

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
               +   +++++            LT+      +  +      A     +P        
Sbjct: 120 LPPAEW--ANVIIATG--------PLTSQPLADAIRALTDESALAFFDAIAPIVHKDTID 169

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R     P       I    T +Q+  +  +      +K   +  E     TN
Sbjct: 170 MSKAWFQSRYDKVGPGGTGADYINCPMTREQY--DAFVAALLAGEKTDFKDWE-----TN 222

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGLNTD 303
                     I+  A    +   +GP     +    D  V    +    + L  +     
Sbjct: 223 TPYFD-GCLPIEVMAERGHETLRHGPMKPVGLTNPHDPTV----KPYAIVQLRQDNKLGT 277

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q Q  RTIPGLE     R G      ++N PK L   L  +    
Sbjct: 278 LYNMVGFQTKLKYGPQQQIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDQQLRLRAQPR 337

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+A+ GL+AG+ +A ++          T + +G ++  +T   +  
Sbjct: 338 LRFAGQMTGCEGYVESASIGLIAGLYAAAEARGASLAAPPPTTA-LGALLGHITGGHIE- 395

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                T     R S +P N +  L P
Sbjct: 396 -----TIDGATR-SFQPMNINFGLFP 415


>gi|186684313|ref|YP_001867509.1| tRNA (uracil-5-)-methyltransferase Gid [Nostoc punctiforme PCC
           73102]
 gi|186466765|gb|ACC82566.1| gid protein [Nostoc punctiforme PCC 73102]
          Length = 452

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/496 (21%), Positives = 177/496 (35%), Gaps = 83/496 (16%)

Query: 1   MINRSYDV------------IVIGGGHAGCEAAAVAAKLGASTALI---------THKTS 39
           M+  +YDV             VIGGG AG EAA   A+ G    L           H T 
Sbjct: 1   MLIDTYDVGIKKLTMEQQPIQVIGGGLAGTEAAWQIAQAGVPVILHEMRPKRFSPAHHTE 60

Query: 40  TIGSMSCNPAIGGLGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR 95
            +  + C+ + G +      G L  E+  L  ++   AD   +              G  
Sbjct: 61  HLAELVCSNSFGAMASDRAAGLLHEELRQLGSIVISKADEHAV------------PAGGA 108

Query: 96  TQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              DR  +   + + + +   ++  +GEV+           +V+            LT+ 
Sbjct: 109 LAVDRGQFGQDLTQTLANHPLIEFRRGEVSAIPEGI-----VVLATG--------PLTSP 155

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
                +     ++  +     SP     +      F   R   G  A L+      +K +
Sbjct: 156 DLAEDLQRFTGMEYLSFFDAASPIIVGESINRDVAFMASRYDKGEAAYLNCPM---NKEQ 212

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
                E L       ++   +  E    R   +     +  I+  A    D   YGP   
Sbjct: 213 YLHFREELCKA----EQTELKGFE----RETAKFFEACL-PIEELAQRGEDTMRYGPLKP 263

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
             + D   R GER    + L  E     +    G  T L    Q +  + IP LEK   +
Sbjct: 264 VGLSD--TRTGERPYAVVQLRQEDKVGQLWNMVGFQTNLRWGEQKRIFQLIPSLEKAEFV 321

Query: 336 RPGYAIEYDYINPKEL-FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394
           R G      +IN  +L  PTL+ K+   L  AGQ+ GT GY  AAA G +AGIN+AR + 
Sbjct: 322 RLGVMHRNTFINAPQLMHPTLQFKECPTLLAAGQLIGTEGYTAAAAGGCLAGINAARLAL 381

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG 454
             + +    T + +G +++ ++S                    +P   +  + P   +LG
Sbjct: 382 GKEALVLPPT-TMMGALLEFISSASPKH--------------FQPMPPNFGIFP---ELG 423

Query: 455 CIGERRQKRFAKYIQE 470
              + +Q+R+ +Y   
Sbjct: 424 AKIKSKQERYGRYRDR 439


>gi|163853284|ref|YP_001641327.1| gid protein [Methylobacterium extorquens PA1]
 gi|163664889|gb|ABY32256.1| gid protein [Methylobacterium extorquens PA1]
          Length = 514

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 155/448 (34%), Gaps = 34/448 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G +  L   +            +  L   +  R  DA   
Sbjct: 45  IHIVGGGLAGSEAAWQVAQGGRTVVLHEMRPVRATDAHHTDGLAELVCSNSFRSDDANGN 104

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 105 AVGLLHQEMRSLDSLIMRTADAHQVPA--GGALAVDREGFSRAVTAALEDHPNITILREE 162

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +   +  A     +P     
Sbjct: 163 VAGLPPEDW---------GSTILA-TGPLTSPALAEAVGTLTGRESLAFFDAIAPIVHRD 212

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K   ++ E    
Sbjct: 213 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTAFKEWEASTP 270

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 271 YFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 323

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  K    
Sbjct: 324 LFNMVGFQTKLRHAEQVRVFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLKARPQ 383

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   V  
Sbjct: 384 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGQTLAPLPPTTA-LGALIGHITGGHVE- 441

Query: 423 PYRMFTSRAEYR--ISLRPDNADNRLTP 448
                T  AE     S +P N +  L P
Sbjct: 442 ----ATEEAERNAPRSFQPMNVNFGLFP 465


>gi|160945999|ref|ZP_02093225.1| hypothetical protein FAEPRAM212_03532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443730|gb|EDP20735.1| hypothetical protein FAEPRAM212_03532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 458

 Score =  237 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 165/496 (33%), Gaps = 55/496 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL- 53
             Y V ++G G AGCEAA   A  G    L           HK+     + C+ ++    
Sbjct: 2   NEYKVTILGAGLAGCEAALWLAGKGVQIELYEQKPVHFSPAHKSEGFAELICSNSLKAER 61

Query: 54  ---GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L  E+  +   +   A+   +              G     DR+ +  A+ R 
Sbjct: 62  LDSASGLLKEEMRRMGSRLLTAAEETRV------------AAGGALAVDRDAFSAAVTRM 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           +   EN+ V + +V   +    I +++  + D ++     +   TG      +H      
Sbjct: 110 VEQCENITVHREQVETIDESAPILVATGPLTDGAL--ADEIGRLTG---DERLHFYDAVA 164

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
               +  + S      F    +D G            +   +           L  F   
Sbjct: 165 ---PIVTAESLDYGKVFAASRYDRGEADYLNCPFNKAEYEAFHAALASAERAPLHDFDTG 221

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            ++ T    +    + +  T       I+  A    D   +GP     + D     G R 
Sbjct: 222 AEQSTKPDPDAHGKKADTVTVYEGCMPIEIMAARGADTMRFGPLRPVGLVDP--NTGHRP 279

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  E     +    G  T L    Q +    IPGLE    +R G      +++ P
Sbjct: 280 WANVQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFVRYGVMHRNTFLDAP 339

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
           + L   L  K    +F AGQI G  GY E+AA GL+A  N   +      +     D+  
Sbjct: 340 RVLSAQLCLKTHPNVFFAGQITGFEGYMESAACGLLAARNLYARLEGRQ-LPPPPADTMC 398

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGERRQKRFAKY 467
           G ++  LT++                 + +P  A+   L P+  +     ++R +  A+ 
Sbjct: 399 GALVQYLTTE---------------NKNFQPMGANMGILPPLPAETRP-RDKRLRYMAQA 442

Query: 468 IQEYNFLRSLLKSLVL 483
            +     +  L+   L
Sbjct: 443 ERAVASFQHWLEETAL 458


>gi|218460005|ref|ZP_03500096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli Kim 5]
          Length = 211

 Score =  237 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/200 (63%), Positives = 151/200 (75%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNPAIGGLGKGHLVREIDA+DGLMGRVAD AGIQFR+LN KKG AVRGPRTQADR+LY
Sbjct: 1   MSCNPAIGGLGKGHLVREIDAMDGLMGRVADLAGIQFRMLNRKKGAAVRGPRTQADRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           RLAM   I +   LD+++G+    +   N ++ ++M+D   ++   VVLTTGTFLRG+IH
Sbjct: 61  RLAMLAAIEATPGLDIVEGDAFDLDVVDNRVAGVIMKDGRRLKAPAVVLTTGTFLRGLIH 120

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           IG  K PAGR+G+ PS  L  +  +     GRLKTGTPARLDGKTI W    +Q ADE L
Sbjct: 121 IGSDKTPAGRVGEPPSLGLSATLARLGLRLGRLKTGTPARLDGKTIDWQSVGRQGADEDL 180

Query: 224 IPFSFMTDKITNRQIECGIT 243
           +PFSFMTD IT RQIECG+T
Sbjct: 181 VPFSFMTDSITTRQIECGVT 200


>gi|325283101|ref|YP_004255642.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Deinococcus proteolyticus MRP]
 gi|324314910|gb|ADY26025.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Deinococcus proteolyticus MRP]
          Length = 459

 Score =  237 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 158/456 (34%), Gaps = 71/456 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIGGLG--- 54
           ++ VIG G AG EAA  AA  G S  L   +   +           + C+ ++GG G   
Sbjct: 3   EITVIGAGLAGSEAALSAASQGVSVRLYEMRPHRMTPAHRSGDFAELVCSTSLGGEGEMQ 62

Query: 55  -KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            KG L  E+ ++ G +   AD            + PA  G     DR+ +   +   + S
Sbjct: 63  SKGMLQAELRSVGGAIVGAADE----------SRVPA--GNALAVDRDAFSARVTERVRS 110

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + V++ EV        +I             ++  LT+      V  +   +  +  
Sbjct: 111 HPLITVVEEEVQQVPEGICVI-------------ASGPLTSDALAEDVARLTGSERLSFY 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +  GR             I    T++++   R I         
Sbjct: 158 DAAAPVIDAASIDMSVAWRAGRYDQ------SADYINCPFTKEEYL--RFIGALETARTH 209

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           T    E             I       A    D   +GP     ++D   R G       
Sbjct: 210 TPHDWEKLEFFEGCMPIEEI-------ARRGPDTPRFGPMSPKGLDDP--RTGRWPYAVA 260

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E     +    G  T L    Q   ++ IPGLE   I+R G      Y+N P  L 
Sbjct: 261 QLRQEDAEGRMWSLVGFQTGLKWGDQKDVVQLIPGLENAEIVRYGVMHRNTYLNAPAVLQ 320

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TL+ +     F+AG + GT GY E+AA G +AG+N+AR +  L       T S +G ++
Sbjct: 321 ETLQLRADPQKFVAGVLAGTEGYLESAATGWLAGLNAARLAQGLAPSAPPHT-SMLGGLV 379

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             L               +      +P N +  L P
Sbjct: 380 HYLA--------------SANPGGFQPMNVNWALVP 401


>gi|256159616|ref|ZP_05457378.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti M490/95/1]
 gi|256254896|ref|ZP_05460432.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella ceti B1/94]
 gi|261222079|ref|ZP_05936360.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti B1/94]
 gi|265998044|ref|ZP_06110601.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M490/95/1]
 gi|260920663|gb|EEX87316.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti B1/94]
 gi|262552512|gb|EEZ08502.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella ceti M490/95/1]
          Length = 466

 Score =  237 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 159/494 (32%), Gaps = 63/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G             +  + I   T  LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLP---------PTEWGTTIIA-TGPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYTV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLSQAAVPPPPTTAF-GAL 395

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQKRF 464
           +  +T   ++      T     + S +P N +  L P        G +L    +   K+ 
Sbjct: 396 LGHITGGHIV------TDDEPGKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIAKKR 449

Query: 465 AKYIQEYNFLRSLL 478
           A   +     R+ L
Sbjct: 450 ALSARALADCRNWL 463


>gi|108763266|ref|YP_631216.1| tRNA (uracil-5-)-methyltransferase Gid [Myxococcus xanthus DK 1622]
 gi|115311598|sp|Q9S449|TRMFO_MYXXD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|27804885|gb|AAO22919.1| GidA-like protein [Myxococcus xanthus]
 gi|108467146|gb|ABF92331.1| gid protein [Myxococcus xanthus DK 1622]
          Length = 457

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 153/440 (34%), Gaps = 36/440 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++   V VIGGG AG E A   ++ G    L   K         +  +  L   + +R
Sbjct: 1   MADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLR 60

Query: 61  EID---ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +   A+  L   +     +     +  + PA  G     +RE +  A+   +L Q  +
Sbjct: 61  SDNPESAIGLLHAELRALGSLVLSAADANRVPA--GDALAVERERFSAAITESLLRQPGV 118

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++ GEV     +  ++             +T  LT+    R +      ++       +
Sbjct: 119 ELVAGEVEQLPEDGPVVI------------ATGPLTSDALTRELERHVGTRL-YFYDSIA 165

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P  S  +  M   F   R   G         +    T+ ++   R I       K+    
Sbjct: 166 PILSADSIDMNVAFRQSRYGKGGGD----DYLNLPMTKDEYY--RFIAEVKAGQKVVPHA 219

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            E            ++ E          D  +YGP     + D   R G+     + L  
Sbjct: 220 FEEPKYFEGCLPIEVMAE-------RGDDTLAYGPMKPVGLRDP--RTGQEPYAVVQLRM 270

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
           E +        G  T L    Q +   + IPGL++   +R G      +I+ P+ L   L
Sbjct: 271 EDVGGTSWNMVGFQTRLTWGEQKRIFSSFIPGLQQAEFLRMGQIHRNTFIDSPRLLAKDL 330

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K    L+ AGQI+G  GY E+AA G +  +    +    + +    T +  G ++  +
Sbjct: 331 SLKTEPRLYFAGQISGVEGYVESAACGYLVALALHARLTGTEFVPPPATTAM-GALLRHV 389

Query: 416 TSKGVLEPYRMFTSRAEYRI 435
           T +     Y    S   + I
Sbjct: 390 TGEAHPPDYPHQPSNISFGI 409


>gi|242279775|ref|YP_002991904.1| gid protein [Desulfovibrio salexigens DSM 2638]
 gi|242122669|gb|ACS80365.1| gid protein [Desulfovibrio salexigens DSM 2638]
          Length = 440

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 164/487 (33%), Gaps = 68/487 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH---------- 57
           + VIGGG AGCE A   AK      L   K          P +  L   +          
Sbjct: 4   IAVIGGGLAGCECAMQLAKAEIQVVLYEMKPDKYSEAHHLPGLAELVCSNSLRSGELNTA 63

Query: 58  ---LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
              L +E++ALD ++ + A  A +              G     DRE++   +  EI   
Sbjct: 64  IGVLKKEMEALDSVLMKAAMKARV------------PAGSALAVDREVFSKLVTEEIEQN 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           E + V++ E+  F+  +       + D S I      L +      ++     +      
Sbjct: 112 EFITVVRKEITSFDDPE-------LVDFSKIVVCAGPLASEGLTESLMSKIGEQRLYFYD 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  S  +  M   F   R K       D   +    TE+Q+     I      +++ 
Sbjct: 165 AIAPIVSRDSVNMDVAFFGSRYKPE-----DDDYLNCPMTEEQY--NSFIKELKEGERVV 217

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            R+ E  I                  A       ++GP     + D   R  E+    + 
Sbjct: 218 PREFEKEIHFEGCLPIE-------EMADRGDMTLAFGPLKPVGLIDP--RTEEQAYAVVQ 268

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E  +       G  T L    Q +  R IPGLE V  +R G      Y+N P+ L  
Sbjct: 269 LRAENKDKTAFNLVGFQTKLKYPEQKRIFRMIPGLEDVEFLRMGSIHRNTYVNAPEVLDE 328

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  K  S + LAGQI G  GY E+AA GL  G   A ++   +        S  G ++ 
Sbjct: 329 KLALKADSRIHLAGQITGVEGYLESAACGLWVGRMLAEQAKGNELPAPPPETSM-GALLG 387

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L                E + + +P N    L P    L     +R ++     +  + 
Sbjct: 388 HLR---------------EAKKNFQPSNVQFGLMP---ALKKRAPKRVRKELYGKRAMDL 429

Query: 474 LRSLLKS 480
             +  + 
Sbjct: 430 FEAWFEE 436


>gi|148553800|ref|YP_001261382.1| tRNA (uracil-5-)-methyltransferase Gid [Sphingomonas wittichii RW1]
 gi|166989567|sp|A5V4M8|TRMFO_SPHWW RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|148498990|gb|ABQ67244.1| gid protein [Sphingomonas wittichii RW1]
          Length = 445

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 169/504 (33%), Gaps = 92/504 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIG 51
           M+++   + VIGGG AG EAA   A+ G    L           H+T ++  + C+ +  
Sbjct: 1   MVHQ---IHVIGGGLAGSEAAWQLAQAGIRVRLSEMRGIEATPAHQTDSLAELVCSNSFR 57

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+ AL  L+   ADA  +              G     DRE Y  A+
Sbjct: 58  SDDPTNAVGLLHAEMRALGSLIMAKADAHRV------------PAGSALAVDREGYAEAV 105

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG------- 160
              +     +++++  V     +  +I        +     ++   TG            
Sbjct: 106 THAVAGHPLIELVRERVDALPADGPVIV-ATGPLTAAALADSIGAATGADALAFFDAIAP 164

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-FA 219
           ++H   + +    M           ++    D  +      A LDG+   + + EK    
Sbjct: 165 IVHHHSIDMDVAWMASRWDKGETKDYINCPMDKDQYLAFHQALLDGEKTAFKEWEKDTPY 224

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
            +  +P   M ++                                 D   YGP     ++
Sbjct: 225 FDGCMPIEVMAER-------------------------------GVDTMRYGPMKPVGLD 253

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           +   R G      + L  +     +    G  T L    Q +  RTIPGL K    R G 
Sbjct: 254 NP--RTGRWPYAVVQLRQDNALGTLWNMVGFQTKLKHAEQVRLFRTIPGLGKAEFARLGG 311

Query: 340 AIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                +I +PK L   L  K    +  AGQI G  GY E+AA GL+AG  +A +      
Sbjct: 312 LHRNTFIQSPKLLDGALRLKSRPNIRFAGQITGCEGYVESAAIGLLAGRFAAAELLGR-P 370

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCI 456
           I      + +G ++  +T     + Y             +P N +  L P   G K G  
Sbjct: 371 IETPPAATALGALLGHITGGAEADGY-------------QPMNVNFGLFPPLEGAKGG-- 415

Query: 457 GERRQKRFAKYIQEYNFLRSLLKS 480
              R+++  +           LK+
Sbjct: 416 ---RKRKGDRKAMMAERAGEALKA 436


>gi|170740726|ref|YP_001769381.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium sp. 4-46]
 gi|205830310|sp|B0UI96|TRMFO_METS4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|168195000|gb|ACA16947.1| gid protein [Methylobacterium sp. 4-46]
          Length = 473

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 152/472 (32%), Gaps = 33/472 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE----ID 63
           + V+GGG AG EAA   A+ G    L   +            +  L   +  R     ++
Sbjct: 7   IHVVGGGLAGSEAAWQIAEAGLPVVLHEMRPLRATEAHRTDGLAELVCSNSFRSDDAALN 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  R  +  + PA  G     DRE +  A+ R + +   + + + E
Sbjct: 67  AVGLLHQEMRRLGSLIMRAGDANQVPA--GGALAVDREGFSRAVTRALEAHPLVTIAREE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G         S+++            LT       +  +   +  A     +P     
Sbjct: 125 IDGLPPASWD--SVIVATG--------PLTAPGLAEAIRGLTGAESLAFFDAIAPIVHRE 174

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I       Q+       F            +    
Sbjct: 175 SIDMGVAWFQSRYDKAGPGGTGADYINCPMDRAQY-----EAFVAALRAGETTSFKEWEA 229

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T    +      ++  A    +   +GP     + +       +    + L  +     
Sbjct: 230 ST---PYFDGCLPVEVMAERGPETLRHGPMKPFGLTNPHNPTV-KAYAIVQLRQDNALGT 285

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE+    R G      Y++ P+ L  TL  K    
Sbjct: 286 LYNMVGFQTKLRHAEQVRIFRTIPGLERAEFARLGGLHRNTYLDSPRLLDATLRLKAAPR 345

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +A +           T + +G +I  +T   V  
Sbjct: 346 LRFAGQITGCEGYVESAAVGLMAGRYAAAERRGRALAPLPPTTA-LGALIAHITGGHVS- 403

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                        S +P N +  L P         + R+ R  +  Q     
Sbjct: 404 -----AEEVGAPRSFQPMNVNFGLFPPLDHAPKAPDGRRLRGPEKAQAKKRA 450


>gi|257465869|ref|ZP_05630180.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917026|ref|ZP_07913266.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690901|gb|EFS27736.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 435

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 172/492 (34%), Gaps = 83/492 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           +VIV+G G AG EA    AK G    L           H       + C+ ++GG     
Sbjct: 4   EVIVVGAGLAGSEATYQLAKRGIPVRLYEMKQQKKTEAHHYDYFAELVCSNSLGGDHLGN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  LD L+ RVAD            K PA +      DR  +   + R + +
Sbjct: 64  ASGLMKEELRLLDSLLVRVADET----------KVPAGQALA--VDRHGFSEKITRILRN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+ +++ E      ++ ++             ++  LT+      ++ +   +     
Sbjct: 112 MENITIVEEEFKEIPKDQYVLI------------ASGPLTSDALFTELLTLTGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  SL +  M   +   R   G     +G+ I    T +++        +F T+ I
Sbjct: 160 DAAAPIVSLESIDMNSAYFQSRYGKG-----EGEYINCPMTREEY-------EAFYTELI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              +          E        ++  A+       +GP     + +   +    +   +
Sbjct: 208 HAERAPLKKF--EEEKLFDACMPVEKIAMSGEKSLLFGPLKPKGLINP--KTDRMDHAVV 263

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            L  +  +  +    G  T L    Q +    IP L++   IR G      +IN  +L  
Sbjct: 264 QLRQDDKDGKLYNMVGFQTNLKWGEQKRVFSMIPALKQAEFIRYGVMHRNTFINSTKLLE 323

Query: 354 -TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K  + L+ AGQI G  GY  A A G +A IN A K    +        + IG +I
Sbjct: 324 KDLSLKTQNNLYFAGQITGGEGYVAAMATGCMAAINIANKLQGKEPFILEDVTA-IGALI 382

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI----GERRQKRFAKYI 468
             +T +                          +  P+G   G I    G+R + +  +Y+
Sbjct: 383 RYITEE------------------------KKKFQPMGPNFGIIRSLEGKRIRDKKERYL 418

Query: 469 QEYNFLRSLLKS 480
           +        LK+
Sbjct: 419 EMSRIAIEYLKN 430


>gi|114797503|ref|YP_761447.1| tRNA (uracil-5-)-methyltransferase Gid [Hyphomonas neptunium ATCC
           15444]
 gi|123027764|sp|Q0BYJ6|TRMFO_HYPNA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114737677|gb|ABI75802.1| gid protein [Hyphomonas neptunium ATCC 15444]
          Length = 467

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 162/487 (33%), Gaps = 50/487 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           + VIGGG AG EAA   A  G    L           H+T  +  + C+ +         
Sbjct: 6   IHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSDDHTTN 65

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+   +GL+   A            K      G     DRE +  A+  ++ +
Sbjct: 66  AVGVIHEEMRRANGLIITTA------------KDHQVPAGSALAVDREGFSEAITAKLEA 113

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + +++ E+AG   E     S+++            LT+      V         A  
Sbjct: 114 HPLVTIVREEIAGLPPEDWD--SVIVATG--------PLTSIALAEAVRAHTGETDLAFF 163

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P+      I    TE+Q+     +       K 
Sbjct: 164 DAIAPIVYFESIDMDKAWRQSRYDKAGPSGDTAAYINCPMTEEQY--NAFLDALLAAPKT 221

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             R  E                 I+  A    +   +GP     + +       +    +
Sbjct: 222 EFRDWEKDTPY------FEGCLPIEVMAERGRETLRFGPMKPVGLTNPHNPTV-KAHAIV 274

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q    R IPGLEK    R G      ++N PK L 
Sbjct: 275 QLRQDNALGTLWNMVGFQTKLKYAAQTDIFRMIPGLEKAEFARLGGIHRNTFLNSPKLLD 334

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  K +  L  AGQ+ G  GY E+AA GL+AG  +A +           T +  G +I
Sbjct: 335 RQLRMKSMPRLRFAGQVTGVEGYVESAAMGLLAGRFAAAERLGQRLEPPPPTTAM-GALI 393

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEY 471
             +T   + E          +   L PD  D   T   G +L    + R K+ A+ I+  
Sbjct: 394 SHITGGHLAEKQTFQPMNVNF--GLFPDITDYSKTDENGKRLRGKDKGRAKKIAQAIRAL 451

Query: 472 NFLRSLL 478
               + L
Sbjct: 452 QDFDAWL 458


>gi|261368260|ref|ZP_05981143.1| tRNA:M(5)U-54 methyltransferase [Subdoligranulum variabile DSM
           15176]
 gi|282569775|gb|EFB75310.1| tRNA:M(5)U-54 methyltransferase [Subdoligranulum variabile DSM
           15176]
          Length = 437

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 154/476 (32%), Gaps = 51/476 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---REIDALD 66
           +IG G AGCEAA   A  G    L   K         +     L   + +   R   A  
Sbjct: 5   IIGAGLAGCEAALWLADAGVQVDLYEQKPGKFSPAHKSEGFAELICSNSLKAERPDSASG 64

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +              +  A  G     DR+++  A+  ++    N+ + + EV  
Sbjct: 65  LLKLEMRAMGSHLLPAAETARVAA--GGALAVDRDVFSAAVTNQVERHPNITIHREEVTA 122

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            +    ++             ++  LT G     +  +      +     +P  +  +  
Sbjct: 123 LDESVPVLV------------ASGPLTEGALAEAIAALTGNHRLSFYDAVAPIVTAESLD 170

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT-RT 245
               F   R   G    L+     ++K E     E         ++      +  +T   
Sbjct: 171 YDKVFAASRYGRGEADYLNCP---FNKEEY----EAFHAALIAAERAPLHDFDGDLTVYE 223

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++       A    D   +GP     + D   R G R    + L  E     + 
Sbjct: 224 GCMPIEVM-------AARGADTIRFGPLRPVGLRDP--RTGHRPWANVQLRAENTARTLY 274

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T L    Q +    IPGLE    +R G      ++  P+ L      K+   +F
Sbjct: 275 NLVGFQTNLKWGEQKRVFSMIPGLEHAEFVRYGVMHRNTFLESPRVLTARQYLKEHPNVF 334

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+A      +    + +     ++  G ++  +T+       
Sbjct: 335 FAGQITGFEGYMESAASGLLAARQILARLQGRE-LPPPPPETMCGALLQYITTPNKD--- 390

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
                        +P  A+  + P   ++  I ++R++  A        +++ ++ 
Sbjct: 391 ------------FQPMGANMGILPRTPEIDAIRDKRERYAALSETAQRAMQAWVEE 434


>gi|289523582|ref|ZP_06440436.1| tRNA:M(5)U-54 methyltransferase [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503274|gb|EFD24438.1| tRNA:M(5)U-54 methyltransferase [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 445

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 108/490 (22%), Positives = 171/490 (34%), Gaps = 73/490 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V ++GGG AG EAA   AK G    L           H+TS    + C+ ++G       
Sbjct: 13  VTIVGGGLAGSEAAYQLAKRGIKVRLYEMRPKKYPPAHRTSKFAELVCSNSLGSDVLSSP 72

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ + AD          + K PA        DRE +   +   I S 
Sbjct: 73  AGILKAELRELDSLIIKCAD----------LHKVPAGWALA--VDREAFSEEVTSRIGSM 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            ++++I+ EV        I+             ++  LT+ +    +  +          
Sbjct: 121 PSVEIIRDEVEKIGGGPAIV-------------ASGPLTSPSLASDLKALVGEDFLYFYD 167

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +   +  F   R   G    ++      ++ E Q   E LI          
Sbjct: 168 AVAPVVLRESINTEIAFYGSRYGYGED-YINCP---LNEEEYQRFYEALIEGEVAMRHEF 223

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +                   ++  A    D   YGP     ++D   R G      + 
Sbjct: 224 EEEH-----------FFEGCLPVEVIAKRGRDALRYGPMRPVGLKDP--RSGREPYAVVQ 270

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IPGLE+    R G      Y+N P  L  
Sbjct: 271 LRQDDKEGRLYNMVGFQTNLRWSEQGRIFRLIPGLEEAEFARYGVMHRNIYVNAPVVLDE 330

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  K    LFLAGQ+ G  GY E+ A GLVA +N          + + R ++ IG ++ 
Sbjct: 331 YLRLKGFDDLFLAGQLAGVEGYVESTAMGLVAALNMFCLLKGNALLSWPR-ETAIGSLLW 389

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L +                  S +P N +  L P   K   I ++R++  A   +    
Sbjct: 390 YLNNANP--------------KSFQPMNINLGLLPPLPK--KIKDKRRRCEAIASKALES 433

Query: 474 LRSLLKSLVL 483
           LR+ ++S   
Sbjct: 434 LRAFMESRSE 443


>gi|227498488|ref|ZP_03928634.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903946|gb|EEH89864.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 438

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 98/491 (19%), Positives = 160/491 (32%), Gaps = 73/491 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GLG 54
           V VIG G AG EA            L           H T+    + C+ ++        
Sbjct: 3   VHVIGAGLAGSEATWQLVSRKIPVKLHEMRPKKSDPAHHTAYYSELVCSNSLRADNIENA 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+   ADA  +              G     DR  +   +   I + 
Sbjct: 63  VGLLKEEMRRLDSLIMAQADAHRV------------PAGGALAVDRMGFAQGVTEAIRNH 110

Query: 115 ENLDVIQGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             + VI+ E        E  +I             +T  LT+      + ++        
Sbjct: 111 PLVTVIEEETIDLSFPEEDYVIV------------ATGPLTSEPLSGAIQNLVSQDYFHF 158

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  +L +   +  +   R   G  A  +      +K E      R        + 
Sbjct: 159 FDAAAPIVTLESINEEIAYKASRYGKGEAAYYNCP---LNKEEY----LRFWEALRTAEV 211

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +  E G+                  A+   D   +GP     + D   R GE     
Sbjct: 212 ADVKDFEHGMVFEGCMPIE-------EMAVRGEDTMRFGPLKPVGLPDP--RTGEDPYAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q +  R IPGLE+   IR G   +  Y+N P  L
Sbjct: 263 VQLRQDNGAGSLFNMVGFQTHLRWPEQKRVFRMIPGLEEAEFIRYGVMHKNSYLNSPLLL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
                 +    L+ AGQ+ G  GY E+AA GL AGI  +R  +    + F R ++ IG +
Sbjct: 323 DADYSLRSHPHLYFAGQMTGVEGYVESAASGLAAGIYLSRTLSGKAKLLFPR-ETAIGAL 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQ 469
              +++  V                 +P N +  L     G ++    E+      + + 
Sbjct: 382 SHYISNPEVKH--------------FQPMNINFGLIAPWDGPRIRGKKEKNHAIAMRALD 427

Query: 470 EYNFLRSLLKS 480
                ++LL +
Sbjct: 428 ILENYKNLLHN 438


>gi|254303088|ref|ZP_04970446.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323280|gb|EDK88530.1| glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 434

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 171/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLIKEELRILGSLLIEVADK----------NRVPAGQALA--VDRDGFSEEVTKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 TENIEIIEEEFIEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       +SF  + I
Sbjct: 160 DAAAPIVTFESIDMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YSFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   +  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--KTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   IN A +             S IG 
Sbjct: 322 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYVAINVANRLENKKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 420 SERAIEYLKK 429


>gi|148255759|ref|YP_001240344.1| tRNA (uracil-5-)-methyltransferase Gid [Bradyrhizobium sp. BTAi1]
 gi|205830326|sp|A5EJU4|TRMFO_BRASB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|146407932|gb|ABQ36438.1| hypothetical protein BBta_4399 [Bradyrhizobium sp. BTAi1]
          Length = 465

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 149/443 (33%), Gaps = 34/443 (7%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA----LD 66
           IG G AG EAA   A+ G    L   +   +           L   +  R  DA    + 
Sbjct: 2   IGAGLAGSEAAWQLAEAGVDVVLHEMRPDRMTEAHRTATPAELVCSNSFRSDDAANNAVG 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +     +  R  +  + PA  G     DRE +  A+   +     +++ +GE+ G
Sbjct: 62  LLHAEMRRLGSLIMRAADANQVPA--GGALAVDREGFSAAVATALNGHPRIELRRGEITG 119

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                    ++++            LT+      +  +      A     +P        
Sbjct: 120 LPPSDWD--NVIIATG--------PLTSQPLAEAIRDLTDETALAFFDAIAPIVHRDTID 169

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R     P       I    T+ Q+  +  +      +K   +  E     TN
Sbjct: 170 MSKAWFQSRYDKVGPGGTGADYINCPMTKDQY--DTFVAALLAGEKTDFKDWE-----TN 222

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                     I+  A    +   +GP     + +       +    + L  +     +  
Sbjct: 223 TPYFD-GCLPIEVMAERGHETLRHGPMKPVGLTNPHNPTV-KPHAIVQLRQDNKLGTLYN 280

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q Q  RTIPGLE     R G      ++N PK L   L  +    L  
Sbjct: 281 MVGFQTKLKYGPQQQIFRTIPGLENAEFARLGGLHRNTFLNSPKLLDAQLRLRAQPRLRF 340

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+ G  GY E+A+ GL+AG+ +A ++     +      + +G ++  +T   +     
Sbjct: 341 AGQMTGCEGYVESASIGLIAGLYAAAEARGTG-LSPPPATTALGALLGHITGGHIE---- 395

Query: 426 MFTSRAEYRISLRPDNADNRLTP 448
             T     R S +P N +  L P
Sbjct: 396 --TIDGATR-SFQPMNINFGLFP 415


>gi|254718998|ref|ZP_05180809.1| tRNA (uracil-5-)-methyltransferase Gid [Brucella sp. 83/13]
 gi|265983989|ref|ZP_06096724.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. 83/13]
 gi|306840115|ref|ZP_07472901.1| gid protein [Brucella sp. NF 2653]
 gi|264662581|gb|EEZ32842.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase trmFO
           [Brucella sp. 83/13]
 gi|306404843|gb|EFM61136.1| gid protein [Brucella sp. NF 2653]
          Length = 466

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 98/497 (19%), Positives = 158/497 (31%), Gaps = 69/497 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V VIGGG AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 10  VHVIGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETN 69

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+     L+   ADA                 G     DRE +  A+   + +
Sbjct: 70  AVGVLHAEMRLAGSLIMACADAH------------QVPAGGALAVDREGFSQAVTARLEA 117

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              + + + E+ G    +   + I              LT  +    +         A  
Sbjct: 118 HPLITIEREEITGLPPAEWGTAIIAT----------GPLTAPSLAEAIAAETDADALAFF 167

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       I     ++Q+  E  +      DK 
Sbjct: 168 DAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYINCPMDKEQY--EAFVAALIEGDKT 225

Query: 234 TNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             ++           T        I+  A    +   +GP     + +       +    
Sbjct: 226 DFKEW--------EGTPYFDGCLPIEVMAERGPETLRHGPMKPMGLTNAHNPTV-KPYAV 276

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L    Q    + IPGLE     R G      Y+N P  L
Sbjct: 277 VQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPGLENAEFARLGGLHRNTYLNSPVLL 336

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K    L  AGQ+ G  GY E++A GL+AG  +A +      +    T ++ G +
Sbjct: 337 DNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGRFTAAEKLGQAVVPPPSTTAF-GAL 395

Query: 412 IDDLTSKGV---LEPYRMFTSRAEYRISLRPDNADNRLTPI-------GMKLGCIGERRQ 461
           +  +T   +    EP          + S +P N +  L P        G +L    +   
Sbjct: 396 LGHITGGHIVADDEP---------GKRSFQPMNVNFGLFPPVDVPKPEGKRLRGKEKTIA 446

Query: 462 KRFAKYIQEYNFLRSLL 478
           K+ A   +     R+ L
Sbjct: 447 KKRALSARALADCRNWL 463


>gi|16126835|ref|NP_421399.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter crescentus
           CB15]
 gi|221235617|ref|YP_002518054.1| tRNA (uracil-5-)-methyltransferase Gid [Caulobacter crescentus
           NA1000]
 gi|26006774|sp|Q9A566|TRMFO_CAUCR RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|13424169|gb|AAK24567.1| GidA family protein [Caulobacter crescentus CB15]
 gi|220964790|gb|ACL96146.1| glucose inhibited division protein A [Caulobacter crescentus
           NA1000]
          Length = 474

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/496 (18%), Positives = 163/496 (32%), Gaps = 57/496 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGSMSCNPAIGGLGKGHLVREI 62
           V VIGGG AG EAA   A+ G    L   +        I        +  +   +  R  
Sbjct: 10  VHVIGGGLAGSEAAWQIAQSGVPVILHEMRKDDATGKVITDAHQTDGLAEMVCSNSFRSD 69

Query: 63  D----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           D    A+  L   +     +     +  + PA  G     DR+ +   + + +     + 
Sbjct: 70  DWQFNAVGLLHAEMRKLGSLIMSCADQHQVPA--GGALAVDRDGFSTEVTKRLSQHPLVT 127

Query: 119 VIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           +++ E+AG     +  +    +++            LT+    + V+ +      +    
Sbjct: 128 IVREEIAGLPPAPDGKNGWDNVIVATG--------PLTSPALAQAVLDLTGEGQLSFFDA 179

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            +P     +  M   +   R     P       I     ++Q+  E  I       K   
Sbjct: 180 IAPIIHFESINMDIAWRQSRYDKEGPGGDAAAYINCPMNKEQY--EAFIDALLAGPKSEF 237

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQ 292
           ++ E            ++ E          +   +GP     +    D +V    +    
Sbjct: 238 KEWENVPYFDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNPRDPLV----KAYAI 286

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  +     +    G  T L   +Q +  R IPGLE     R G      +IN PK L
Sbjct: 287 VQLRQDNALGTLWNMVGFQTKLKHGVQAETFRMIPGLEDAQFARLGGLHRNTFINSPKLL 346

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             +L  K    L  AGQ+ G  GY E+AA GL+ G  +A        I      + +G +
Sbjct: 347 DKSLRMKAQPRLRFAGQVTGVEGYVESAAMGLLTGRFAAADRKG-APIDAPPPTTALGAL 405

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQK 462
           ++ +T   +               S +P N +  L P          G K+      R K
Sbjct: 406 VEHITGGHL--------EAGNGPGSFQPMNINYGLLPPLEAPKVDEDGKKIPLKERGRAK 457

Query: 463 RFAKYIQEYNFLRSLL 478
           +    ++    L + +
Sbjct: 458 KRLMSLRALKDLDAWM 473


>gi|75908696|ref|YP_322992.1| tRNA (uracil-5-)-methyltransferase Gid [Anabaena variabilis ATCC
           29413]
 gi|123609418|sp|Q3MA89|TRMFO_ANAVT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|75702421|gb|ABA22097.1| Gid protein [Anabaena variabilis ATCC 29413]
          Length = 438

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 101/477 (21%), Positives = 166/477 (34%), Gaps = 60/477 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +      G
Sbjct: 8   VIGGGLAGTEAAWQIAQAGVPVILHEMRPKRFSPAHHTEHLAELVCSNSFGAMASDRAAG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  ++   AD   +              G     DR  +   + + + S   
Sbjct: 68  LLHEELRQLGSVVIAKADEHAV------------PAGGALAVDRGQFGQDLTQTLASHPL 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++  + EV            +V+            LT+      +     ++  +     
Sbjct: 116 VEFRRSEVPAIPEGI-----VVLATG--------PLTSPDLAADLHRFTGMEYMSFFDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L+      +K +     E L       ++   +
Sbjct: 163 SPIIVGDSINRDIAFMASRYDKGEAAYLNCPM---NKEQYLRFREELCKA----EQTELK 215

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             E    R   +     +  I+  A    D   YGP     + D   R GER    + L 
Sbjct: 216 DFE----RETAKFFEACL-PIEELAQRGEDTMRYGPVKPVGLSDS--RTGERPYAVVQLR 268

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-FPTL 355
            E     +    G  T L    Q +  + IPGLEK   +R G      +IN  +L  PTL
Sbjct: 269 QEDKAGQLWNMVGFQTNLRWGEQKRVFQMIPGLEKAEFVRLGVMHRNTFINAPQLMLPTL 328

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  AAA G +AG N+AR +   + +    T + +G +++ +
Sbjct: 329 QFKQRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLALGKEPLALPPT-TMLGALLEFI 387

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
           +S     P         + I     +   ++     + G   +R     + +    N
Sbjct: 388 SSAS---PKHFQPMPPNFGIL---PDLGMKIKSKPERYGRYRDRSLADLSSWKHNLN 438


>gi|126657809|ref|ZP_01728963.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
 gi|126621026|gb|EAZ91741.1| glucose-inhibited division protein A [Cyanothece sp. CCY0110]
          Length = 460

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 109/503 (21%), Positives = 178/503 (35%), Gaps = 75/503 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M   +  V VIGGG AG EAA   A+ G    L           H +  +  + C+ + G
Sbjct: 1   MTESTAKVQVIGGGLAGTEAAWQVAQAGIPVILHEMRPIRTSPAHHSQELAELVCSNSFG 60

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +      G L  E+  L+ ++ + AD   +              G     DR ++   +
Sbjct: 61  AMSSDRAAGLLHEELRRLNSIIIQTADKHAV------------PAGGALAVDRGVFSHQL 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + + +   +++ + EV                D  +I   T  LT+      +  +  +
Sbjct: 109 TQTLQNHPLIELRRSEVQEIP-----------SDGIIILA-TGPLTSPVLAEKLQQLTGM 156

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +     SP     +      F   R   G  A L+       +   QF DE      
Sbjct: 157 AYMSFFDAASPIIVGDSINRDIAFLASRYDKGEAAYLNCPL--NPEQYLQFRDELCRA-- 212

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              ++   ++ E    R   +        I+  A    D   YGP     + D   R G+
Sbjct: 213 ---EQAELKEFE----RETAKFFE-GCLPIEELAQRGEDTMRYGPLKPVGLFDA--RLGD 262

Query: 288 ---------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
                    R    + L  E     +    G  T L    Q +  R IPGLE    +R G
Sbjct: 263 FRDPENKEKRPYAVVQLRQEDKQGKLWNMVGFQTNLRWGEQKRVFRFIPGLENAEFVRMG 322

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +IN P+ L PTL+ K    L  AGQ+ GT GY  AAA G +AG N+AR +  L+
Sbjct: 323 VMHRNTFINSPQLLDPTLQFKSRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARIALGLE 382

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
            I    T   +G + + ++S     P         + I          L  + +++    
Sbjct: 383 PITLPST-MMMGALFEFISSAS---PKHFQPMPPNFGI----------LPDLPVRIRNKR 428

Query: 458 ERRQKRFAKYIQEYNFLRSLLKS 480
           ER  K   + + + N  ++ L +
Sbjct: 429 ERYGKYRDRALADLNECQTQLNN 451


>gi|46202952|ref|ZP_00052330.2| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 507

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 107/494 (21%), Positives = 170/494 (34%), Gaps = 62/494 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG-----GL 53
           + ++GGG AG EAA   A+ G    L           H++  +  + C+ +       G 
Sbjct: 37  IHIVGGGLAGSEAAWQIAQGGRKVVLHEMRPVRGTDAHQSDGLAELVCSNSFRSDDANGN 96

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L +E+  L  L+ R ADA                 G     DRE +  A+   +  
Sbjct: 97  AVGLLHQEMRTLGSLIMRAADAH------------QVPAGGALAVDREGFSRAVTTALEE 144

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ +++ EVAG   E+           S I   T  LT+      V  +   +  A  
Sbjct: 145 HPNITILREEVAGLPPEEW---------GSTILA-TGPLTSPALAEAVGALTGKESLAFF 194

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       +      +Q+  E  +      +K 
Sbjct: 195 DAIAPIVHRESIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKT 252

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           + ++ E      +          I+  A    +   +GP     + +       +    +
Sbjct: 253 SFKEWEASTPYFD------GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIV 305

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  RTIPGLEK    R G      Y++ P+ L 
Sbjct: 306 QLRQDNALGTLFNMVGFQTKLRHAEQVRVFRTIPGLEKAEFARLGGLHRNTYLDSPRLLD 365

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            TL  K    L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I
Sbjct: 366 ATLRLKARPSLRFAGQITGCEGYVESAAVGLMAGRYALAEAEGRSLGPLPPTTA-LGALI 424

Query: 413 DDLTSKGVLEPYRMFTSRAEYR--ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
             +T   V          AE     S +P N +  L P           R  R     + 
Sbjct: 425 GHITGGHVE-----VAEEAERNAPRSFQPMNVNFGLFP--------PLERMPRNETGKRL 471

Query: 471 YNFLRSLLKSLVLT 484
               ++ LK   LT
Sbjct: 472 RGPEKAALKKRALT 485


>gi|94971655|ref|YP_593703.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Koribacter
           versatilis Ellin345]
 gi|205830305|sp|Q1IHM1|TRMFO_ACIBL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94553705|gb|ABF43629.1| gid protein [Candidatus Koribacter versatilis Ellin345]
          Length = 444

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 166/483 (34%), Gaps = 75/483 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKG---- 56
           +IG G AGCEAA   A+ G    L           H+TS    + C+ ++   G+     
Sbjct: 7   IIGAGLAGCEAAWQCARRGLDVELYEMRPVKSTPAHQTSDFAELVCSNSLKSAGENSAPW 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+     L+  +A    +          PA        DR  +   + R I ++  
Sbjct: 67  LLKEEMRRGGSLLLEIAQKTSV----------PAGHALA--VDRGAFAAEVTRVIEAEPR 114

Query: 117 LDVIQGEVAGFNTEK---NIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPA 171
           + V++GEV   +       I +  +  D      + +   T  +    I   +    I  
Sbjct: 115 IRVVRGEVTKIDENDALTVIATGPLTSDALSQEIARLSGNTHLYFYDSISPIVEADSIDM 174

Query: 172 GRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            R+  +         ++    +         A ++  ++   + E     E  +P     
Sbjct: 175 SRVYMAARYDKGTADYINCPMNKEEYDRFLDALIEAHSVDAKEWENLNYFEGCLP----- 229

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                                     I+  A    D   +GP     + D   + G    
Sbjct: 230 --------------------------IEEIARRGRDTLRFGPMKPVGLTDP--KTGRYPY 261

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             + L  E L  D     G    L    Q + +R IPGLE    +R G      YIN P 
Sbjct: 262 AVVQLRQENLRADSYNLVGFQNHLKYGDQARVMRLIPGLENAKFLRYGQIHRNTYINSPT 321

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L  TL  K+   +F AGQI+G  GY E+ A G +AG++ +  +   + +   R  ++ G
Sbjct: 322 LLTETLRMKEHPNVFFAGQISGVEGYVESIATGQMAGMHVSTVAMGHEPVAPPRATAF-G 380

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            +++ +      E      +   + +  + D A  R      K+    ER +      ++
Sbjct: 381 SLVNYICH---AEAKHFQPANITFDLLPQLDEAARR------KVRDKKERHRMVCEAALK 431

Query: 470 EYN 472
           E++
Sbjct: 432 EFD 434


>gi|116619487|ref|YP_821643.1| tRNA (uracil-5-)-methyltransferase Gid [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122255955|sp|Q02C58|TRMFO_SOLUE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|116222649|gb|ABJ81358.1| gid protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 445

 Score =  235 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 170/480 (35%), Gaps = 56/480 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH- 57
           + +IGGG AG EAA   A+ G +  L           H+T  +  + C+ ++    +   
Sbjct: 5   IHIIGGGLAGTEAAWQLARRGLACTLHEMRPVRPTPAHQTDRLAELVCSNSLKSESESTA 64

Query: 58  ---LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
              L  E+  LD L+ + A  A +              G     DR+++   +   I ++
Sbjct: 65  PWLLKEELRRLDSLLLQCAQKARV------------PGGHALTVDRDIFAREVTAAITAE 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +++ EV+  + +   I             ++  LT+G     +  +          
Sbjct: 113 PLITLLRDEVSSLSADAIWIV------------ASGPLTSGPLAEEIARLTGSGRLYFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +      +   R    T    D      D+ + +   + L+    ++  I 
Sbjct: 161 SISPIVDAESVDTSIAWWASRYGKSTDGTDDYLNCPLDRGQYEHFVDELLKADSVSAHIP 220

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                C                I+  A    D   +GP     ++D   R G R    + 
Sbjct: 221 EDN-TCY---------FEACLPIEEIARRGRDTLRFGPMKPMGLDDP--RTGRRPWAVVQ 268

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E L  +     G    +    Q + +R IPGL+    +R G      YIN P  L  
Sbjct: 269 LRQENLRAESFNLVGFQNHMKFPEQKRVLRLIPGLQNAEFLRYGQIHRNTYINAPALLTA 328

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  +    +F AGQI+G  GY E+ A GL+AGI++A  +         R  + +G +  
Sbjct: 329 ALNLRARPEIFFAGQISGVEGYVESIATGLMAGIHAAALATGDTPRPLPR-QTALGSLCH 387

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNAD-NRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
            ++     +P     +   + +  + + A+  RL      +   + +R  +   +Y    
Sbjct: 388 YVSG---ADPKDYQPANITFDLLPQLEEAERQRLRRDKKARHALVCQRALEALEEYRHAI 444


>gi|294011442|ref|YP_003544902.1| glucose inhibited division protein Gid [Sphingobium japonicum
           UT26S]
 gi|292674772|dbj|BAI96290.1| glucose inhibited division protein Gid [Sphingobium japonicum
           UT26S]
          Length = 445

 Score =  235 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 165/492 (33%), Gaps = 91/492 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG----- 52
           V +IGGG AG EAA   A+ G    L            H+T  +  + C+ +        
Sbjct: 4   VHIIGGGLAGTEAAWQLAQAGVKVRLSEMRGSGDMTPAHQTDGLAELVCSNSFRSDDADK 63

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
              G L +E+  L  L+   A+ A          K PA  G     DR ++   + R + 
Sbjct: 64  NAVGLLHQEMRRLGSLIMAQAEPA----------KVPA--GSALAVDRHIFSDGVTRALA 111

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVI------ 162
           S  N+++++  +    TE   I        +    +++    G     F   +       
Sbjct: 112 SHPNVEIVRERIDALPTEGMTIV-ATGPLTAPALAASIGQAAGIDHLAFFDAIAPVVHHD 170

Query: 163 -HIGKLKIPAGR-MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-FA 219
                    A R     P       ++    +  + +      LDG+   + + EK    
Sbjct: 171 SIDMDKCWMANRWDKIGPGGGEGKDYINCPMNRDQYQAFVQGLLDGEKTDFKEWEKDTPY 230

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
            E  +P   M                               A    +   +GP     ++
Sbjct: 231 FEGCMPIEVM-------------------------------ASRGPETLRHGPMKPMGLD 259

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           D   R G      + L  +  +  +    G  T L    Q +  RTIPGLEK    R G 
Sbjct: 260 DP--RTGRWPYAVVQLRQDNASGTLWNMVGFQTKLKHGAQVELFRTIPGLEKAEFARLGG 317

Query: 340 AIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                +I +PK L  TL  K    +  AGQ+ G  GY E+AA GL+AG  +A +      
Sbjct: 318 LHRNTFIQSPKLLDGTLRLKSAPHIRFAGQVTGCEGYVESAAIGLLAGRFAAAEILGR-P 376

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           +     ++ +G ++  +T       Y             +P N +  L P    +    +
Sbjct: 377 LAPLPPETALGALLGHVTGNVETADY-------------QPMNVNFGLFPPLQDV--KKK 421

Query: 459 RRQKRFAKYIQE 470
           +R++      + 
Sbjct: 422 QRKEAMTARARA 433


>gi|50365349|ref|YP_053774.1| tRNA (uracil-5-)-methyltransferase Gid [Mesoplasma florum L1]
 gi|81827281|sp|Q6F0T3|TMFO2_MESFL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|50363905|gb|AAT75890.1| glucose inhibited division protein C [Mesoplasma florum L1]
          Length = 446

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 171/512 (33%), Gaps = 85/512 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIG 51
           M N++  V +IG G AG EAA   AK      L   K               + C+ ++ 
Sbjct: 1   MKNKT--VNIIGAGLAGTEAAYQLAKRNIKVKLFEVKRITKNPVQVLDGFAELVCSNSLR 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  LD L+ R A+ A                G     DR L+   +
Sbjct: 59  SNELTNAVGTLKEEMRLLDSLIIRAAEYA------------QVPAGGSLAVDRVLFSEYI 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            +EI S EN++VI  EV   N  +  +             ++  LTT      +  +   
Sbjct: 107 TKEISSNENIEVIDLEVENINPNELTLI------------ASGPLTTNKLQEQITKLIGN 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P     +  M+  +   R   G         I    +++++ +       
Sbjct: 155 DDFYFYDAVAPIIEKESINMEIAYQKNRYDKGET----SDYINCPMSKEEYLN------- 203

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F  + I        +       +      ++  A    D   +GP     +       G 
Sbjct: 204 FYKELINAEISIGHLPGEAELKYFEGCMPVEAMAKRGVDTLLFGPMKPRGLNKPD---GT 260

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           RN   + L  +  N  +    G  T L    Q +    IPGLE    +R G   + ++IN
Sbjct: 261 RNHAVVQLRQDDANDRLYNIVGFQTNLKWPEQKRIFSMIPGLENAKFVRYGVMHKNNFIN 320

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            PK L   L+ K    +F AGQI G  GY E+   GL+  IN A   N  + +    + S
Sbjct: 321 SPKVLNKYLQLKTNENIFFAGQITGVEGYVESCVSGLITAINIANFINGKE-MQVPSSKS 379

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
             G +++ +    +                           P+    G + E   KR  +
Sbjct: 380 VSGALLNYINKASIT-----------------------NFQPMKANWGIVDEIEFKRPNR 416

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQD 498
            + +    +       + ++ +S  +I   +D
Sbjct: 417 KVTKQEIKK-------MKNEKISELAIDSIKD 441


>gi|17232063|ref|NP_488611.1| tRNA (uracil-5-)-methyltransferase Gid [Nostoc sp. PCC 7120]
 gi|26006767|sp|Q8YNJ4|TRMFO_NOSS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|17133707|dbj|BAB76270.1| glucose-inhibited division protein [Nostoc sp. PCC 7120]
          Length = 438

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/464 (22%), Positives = 165/464 (35%), Gaps = 67/464 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK----G 56
           VIGGG AG EAA   A+ G    L           H T  +  + C+ + G +      G
Sbjct: 8   VIGGGLAGTEAAWQIAQAGVPVILHEMRPKRFSPAHHTEHLAELVCSNSFGAMASDRAAG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  ++   AD   +              G     DR  +   + + + S   
Sbjct: 68  LLHEELRQLGSVVIAKADEHAV------------PAGGALAVDRGQFGQDLTQTLASHPL 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           ++  +GEV            +V+            LT+      +     ++  +     
Sbjct: 116 VEFRRGEVPYIPEGI-----VVLATG--------PLTSPDLAADLHRFTGMEYMSFFDAA 162

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L+      +K +     E L       ++   +
Sbjct: 163 SPIIVGDSINRDIAFMASRYDKGEAAYLNCPM---NKEQYLRFREELCKA----EQTELK 215

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
             E    R   +     +  I+  A    D   YGP     + D   R GER    + L 
Sbjct: 216 DFE----RETAKFFEACL-PIEELAQRGEDTMRYGPVKPVGLSDS--RTGERPYAVVQLR 268

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL-FPTL 355
            E     +    G  T L    Q +  + IPGLEK   +R G      +IN  +L  PTL
Sbjct: 269 QEDKAGQLWNMVGFQTNLRWGEQKRVFQMIPGLEKAEFVRLGVMHRNTFINAPQLMLPTL 328

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           + K+   L  AGQ+ GT GY  AAA G +AG N+AR +   + +    T + +G +++ +
Sbjct: 329 QFKQRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLALGKEPLALPPT-TMLGALLEFI 387

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
           +S     P         + I          L  +GMK+    ER
Sbjct: 388 SSAS---PKHFQPMPPNFGI----------LPDLGMKIKSKPER 418


>gi|188583546|ref|YP_001926991.1| tRNA (uracil-5-)-methyltransferase Gid [Methylobacterium populi
           BJ001]
 gi|205830308|sp|B1ZES7|TRMFO_METPB RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|179347044|gb|ACB82456.1| gid protein [Methylobacterium populi BJ001]
          Length = 474

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/482 (20%), Positives = 162/482 (33%), Gaps = 38/482 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + ++GGG AG EAA   A+ G    L   +            +  L   +  R  DA   
Sbjct: 5   IHIVGGGLAGSEAAWQIAQGGRRAVLHEMRPRRGTEAHQGEGLAELVCSNSFRSDDANGN 64

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  R  +  + PA  G     DRE +  A+   +    N+ +++ E
Sbjct: 65  AVGLLHQEMRSLNSLIMRAADANQVPA--GGALAVDREGFSQAVTAALEEHPNVTILREE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           VAG   E            S I   T  LT+      V  +      A     +P     
Sbjct: 123 VAGLPPETW---------GSTILA-TGPLTSPALAEAVGALTGRDALAFFDAIAPIVHRD 172

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +      +Q+  E  +      +K T ++ E    
Sbjct: 173 SIDMGKAWFQSRYDKAGPGGTGADYLNCPMDREQY--EAFVAALIAGEKTTFKEWEA--- 227

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            T           I+  A    +   +GP     + +       +    + L  +     
Sbjct: 228 -TTPYFD--GCLPIEVMAERGPETLRHGPMKPVGLTNPHNPTV-KAYAIVQLRQDNALGT 283

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      Y++ P+ L  TL  +    
Sbjct: 284 LFNMVGFQTKLRHAEQVRIFRTIPGLENAEFARLGGLHRNTYLDSPRLLDATLRLRARPQ 343

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQI G  GY E+AA GL+AG  +  ++          T + +G +I  +T   +  
Sbjct: 344 LRFAGQITGCEGYVESAAVGLMAGRYALAEAEGTTLAPLPPTTA-LGALIGHITGGHLEA 402

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                 + A    S +P N +  L P           R  R     +     ++ LK   
Sbjct: 403 S---EDAGANAPRSFQPMNVNFGLFP--------PLERMPRNETGKRLRGPEKAALKKRA 451

Query: 483 LT 484
           LT
Sbjct: 452 LT 453


>gi|56551587|ref|YP_162426.1| tRNA (uracil-5-)-methyltransferase Gid [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|81170609|sp|Q5NPP5|TRMFO_ZYMMO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56543161|gb|AAV89315.1| gid protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 446

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 163/484 (33%), Gaps = 61/484 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V +IGGG AG EAA   A       L           H T  +  + C+ +         
Sbjct: 4   VNIIGGGLAGSEAAWQLASRQIPVRLFEMRGREKTPAHSTDKLAELVCSNSFRSDDPNSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  +  L+  +AD   +              G     DRE +  A+   + +
Sbjct: 64  AVGVLHAEMRKMGSLIMMIADQHRV------------PAGSALAVDREGFAEAVTNRLQN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              +++ +  +     E  II             ++  LT+ +    +  +      +  
Sbjct: 112 HPLIEIHRERIDHIPDETTII-------------ASGPLTSDSLANAITELTGRDALSFF 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R   G         I     ++++            +K 
Sbjct: 159 DAIAPIVYRDSIDMDIAWFQSRWDKGDGH----DYINCPLNKEEYL--AFHAALLAGEKG 212

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              + E                 I+  A    D   +GP     ++D   R G      +
Sbjct: 213 DFHEWEKDTPY------FEGCMPIEVMADRGIDTLRFGPMKPVGLDDP--RTGRWPYGAV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +  R IPGLEK    R G      +I +P  L 
Sbjct: 265 QLRQDNALGTLWNMVGFQTKLKYAEQIRIFRMIPGLEKAEFARLGGMHRNSFIRSPVLLD 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK + +  AGQI G  GY E+A+ GL+AGI +A        +     +S +G ++
Sbjct: 325 EYLRLKKQTNIRFAGQITGCEGYIESASIGLLAGIFTAADKLDKK-VSSPPVESALGALL 383

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +T     + Y+           L P  ++    P   +   + ER +K   ++I E  
Sbjct: 384 GHITKNADPDHYQPMN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEA 437

Query: 473 FLRS 476
           FL+S
Sbjct: 438 FLKS 441


>gi|75675956|ref|YP_318377.1| tRNA (uracil-5-)-methyltransferase Gid [Nitrobacter winogradskyi
           Nb-255]
 gi|123613322|sp|Q3SRR6|TRMFO_NITWN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|74420826|gb|ABA05025.1| Gid protein [Nitrobacter winogradskyi Nb-255]
          Length = 477

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 149/446 (33%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V ++G G AG EAA   A  G    L   +   + +      +  L   +  R  DA   
Sbjct: 11  VHIVGAGLAGSEAAWQVAAQGVRVVLHEMRPHRMTAAHRTGGLAELVCSNSFRSDDASNN 70

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+   + +   +++ + E
Sbjct: 71  AVGLLHAEMRRLGSLVMRCADANQVPA--GGALAVDRDGFSAAVTEALDNHPLIEIDRAE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G                ++I   T  LT+      +  +      A     +P     
Sbjct: 129 IDGLPPADW---------GNVIVA-TGPLTSTPLAAAIRALTDESALAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    +E Q+     +      +K+  +       
Sbjct: 179 SIDMSKAWFQSRYDKAGPGGSGADYINCPLSEAQYH--AFVDALLEGEKVDFKD------ 230

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                 +      I+  A    +   YGP     + +       +    + L  +     
Sbjct: 231 WETAPPYFDGCLPIEVMAERGRETLRYGPMKPVGLTNP-HDPATKPYAVVQLRQDNKLGT 289

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      ++N PK L   L  +    
Sbjct: 290 LYNIVGFQTKLKHGAQTRIFRTIPGLEGAEFARLGGLHRNTFLNSPKLLDVRLRLRAEPR 349

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+AA GL+ G+ +A  +         +T + +G ++  +T   +  
Sbjct: 350 LRFAGQMTGCEGYVESAAIGLLGGLYAAADARSCTLEAPPQTTA-LGALLGHITGGHIE- 407

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 408 ------TIDTGPRSFQPMNINFGLFP 427


>gi|313680130|ref|YP_004057869.1| gid protein [Oceanithermus profundus DSM 14977]
 gi|313152845|gb|ADR36696.1| gid protein [Oceanithermus profundus DSM 14977]
          Length = 439

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 173/484 (35%), Gaps = 69/484 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IG G AG EAA   A+ G    L           H T     + C+ ++GG      
Sbjct: 5   VHIIGAGLAGSEAAMALAERGVPVRLYEMRPRKTTPAHSTDRFAELVCSNSLGGEARTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ A   L+   A+AA +              G     DRE++   +   I + 
Sbjct: 65  KGLLQAELRAAGSLVMAAAEAARL------------PAGGALAVDREVFSGFITERIEAH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ EVA    E+ +I             +T  LT+      +         +   
Sbjct: 113 PRIEVVRAEVAELPRERPLIL------------ATGPLTSDALAEDLRARLGEPFLSFYD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M+  +  GR         D   I    TE+++       F      I 
Sbjct: 161 AAAPVVLGESIDMEVCYRAGRYGQ------DADYINCPMTEEEY-----RRF---YRAIA 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             +         LE        I+  A        +GP     + D   R GER    + 
Sbjct: 207 EARRHTPHDWEQLEFFE-GCMPIEELARRGYQTPLFGPLKPVGLLDP--RTGERPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q Q +R IPGLE+  I+R G      Y+N P+ L  
Sbjct: 264 LRQEDREGRMWSLVGFQTGLKWGDQKQVVRLIPGLEQAEIVRYGVMHRNTYLNAPRVLSE 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            LE KK+ G+F+AG + G  GY E+AA G +A + +   +           +S +G ++ 
Sbjct: 324 RLELKKLPGVFVAGVLAGVEGYLESAATGWLAALQAGALARGRAAPGPPPPESMLGGLVR 383

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            L      +               +P NA+  L P         E+R + F + +Q +  
Sbjct: 384 FLAGANPND--------------FQPMNANWGLVPGLPGRMPKREKRARMFERGLQAFTV 429

Query: 474 LRSL 477
             + 
Sbjct: 430 WLAR 433


>gi|317063576|ref|ZP_07928061.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
 gi|313689252|gb|EFS26087.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
          Length = 437

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 168/487 (34%), Gaps = 65/487 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIG 51
           M N+   VI++G G AGCEAA   AK G    L   K+  +           + C+ ++G
Sbjct: 1   MNNKE--VIIVGAGLAGCEAAYQLAKRGIKVKLYEMKSKKMTEAHKNKYFAELVCSNSLG 58

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G +  E+  LD L+ ++AD            + PA +      DR+ + + +
Sbjct: 59  GDNLANASGLMKEELRKLDSLLIKIADK----------NRVPAGQALA--VDRDGFSIEI 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + + EN             E        + ++ ++  ++  LT+    + +  +   
Sbjct: 107 TEYLRNMEN------------VEIIEEEFTEIPEDQIVLIASGPLTSEILSKKIAELTHS 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P  +L +  M+  +   R   G    ++                +   ++
Sbjct: 155 DHLYFYDAAAPIVTLESIDMEKAYRQSRYGKGEGEYINCPM------------NKEEYYA 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    IT  +     T    +     M  ++  A+       +GP     + +   +  +
Sbjct: 203 FYNALITAERAPL-KTFEEEKLFEACM-PVERIAMTGERTLVFGPLKPKGLINP--KTDK 258

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
            +   + L  +     +    G  T L    Q +    IPGLE  + IR G      +I+
Sbjct: 259 MDYAVVQLRQDDKEGKLYNIVGFQTNLKWGEQKRVFSMIPGLENADFIRYGVMHRNTFID 318

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
             + L  TL+ K    ++ AGQI G+ GY  + + G +A IN A K             S
Sbjct: 319 SSRLLDETLKLKTKDNIYFAGQITGSEGYVSSISTGAMAAINIAHKLLGKAPFILDD-RS 377

Query: 407 YIGVMIDDLT-SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            IG MI  +T  K   +P             +R  +   R          I +       
Sbjct: 378 AIGAMIKYVTEEKKNFQPMGPNFGIIRSLDGIRIRDKKER-------YNAISKIALDHLE 430

Query: 466 KYIQEYN 472
             I+E  
Sbjct: 431 SKIKELA 437


>gi|166364902|ref|YP_001657175.1| tRNA (uracil-5-)-methyltransferase Gid [Microcystis aeruginosa
           NIES-843]
 gi|189040807|sp|B0JFX8|TRMFO_MICAN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|166087275|dbj|BAG01983.1| glucose inhibited division protein [Microcystis aeruginosa
           NIES-843]
          Length = 445

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 170/495 (34%), Gaps = 69/495 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIG 51
           MI+R   + VIGGG AG EAA   A+ G    L   +            +  + C+ + G
Sbjct: 1   MIDRP--IHVIGGGLAGTEAAWQIAQAGIPVILHEMRPIRSSPAHHSQFLAELVCSNSFG 58

Query: 52  GLGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +      G L  E+  L+ L+   AD                  G     DR ++   +
Sbjct: 59  AMAVDRATGLLHEELRRLNSLVIAQADQH------------SVPAGGALAVDRGVFSRNL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   + + + E+     +      +V+            LT+      + +   L
Sbjct: 107 TEILANHPLVTLKRQEITEIPRDGI----VVLTTG--------PLTSAALAADLQNFAGL 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +     SP     +      F   R   G  A L+               +R     
Sbjct: 155 DYLSFFDAASPIILGESIDRSIAFLASRYDKGEAAYLNCPM------------DREQYLH 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F  +     Q E                 I+  A    D   +GP     + D   R+ +
Sbjct: 203 FWQELKQAEQAELKDFERENAKFFEACLPIEELASRGEDTMRFGPLKPVGLADP--RYPD 260

Query: 288 -RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            R    I L  E     +    G  T L    Q +  R IPGLEK   +R G   +  +I
Sbjct: 261 QRPYAVIQLRMEDKAGQLWNMVGFQTNLKWGEQTRVFRLIPGLEKAEFVRMGVMHKNTFI 320

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P+ L  +L+ K    L  AGQ+ GT GY  AAA G +AG N+AR +  L+ +    T 
Sbjct: 321 NSPQLLSSSLQFKSRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLALGLETVTLP-TT 379

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + +G + + ++S    EP         + I          L     K+    ER  +   
Sbjct: 380 TMMGSLFEFISS---AEPKHFQPMPPNFGI----------LPNFTRKIRNKRERYGQYAD 426

Query: 466 KYIQEYNFLRSLLKS 480
           + +Q+     + LK+
Sbjct: 427 RSLQDLEAWMNQLKT 441


>gi|67925116|ref|ZP_00518491.1| Gid protein [Crocosphaera watsonii WH 8501]
 gi|67853035|gb|EAM48419.1| Gid protein [Crocosphaera watsonii WH 8501]
          Length = 456

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/506 (21%), Positives = 177/506 (34%), Gaps = 76/506 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI  +  V VIGGG AG EAA   A+ G    L           H +  +  + C+ + G
Sbjct: 1   MIESTAKVQVIGGGLAGTEAAWQVAQAGIPVVLHEMRPIRTSPAHHSQELAELVCSNSFG 60

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +      G L  E+  L+ ++ + AD                  G     DR ++   +
Sbjct: 61  AMSSDRAAGLLHEELRRLNSIIIQTADKH------------SVPAGGALAVDRGVFSQQL 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   +++ + EV    ++      +++            LT+      +  +  +
Sbjct: 109 TETLATHPLIELRRSEVQEIPSDGI----VILATG--------PLTSPILAENLQQLTGM 156

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +     SP     +      F   R   G  A L+     + K +     E L    
Sbjct: 157 AYMSFFDAASPIIVGDSINRDIAFLASRYDKGEAAYLNCP---FTKAQYLQFREELCAAQ 213

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
               +   +  E    R   +        I+       D   YGP     + D   R G+
Sbjct: 214 ----QAELKDFE----RETAKFFE-GCLPIEELGQRGEDTMRYGPLKPVGLFDA--RLGD 262

Query: 288 ---------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
                    R    + L  E     +    G  T L    Q +  R IPGLE    +R G
Sbjct: 263 FRDPENKEKRPYAVVQLRQEDKQGKLWNMVGFQTNLKWGEQKRVFRLIPGLENAEFVRMG 322

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +IN P+ L PTL+ K    +  AGQ+ GT GY  AAA G +AG N+AR +  LD
Sbjct: 323 VMHRNTFINSPQLLNPTLQFKSRPNVLAAGQLIGTEGYTAAAAGGWLAGTNAARIALGLD 382

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
            I    T   +G + + ++S     P         + I          L  + +++    
Sbjct: 383 PISLPST-MMMGALFEFISSAS---PKHFQPMPPNFGI----------LPDLPVRIRNKR 428

Query: 458 ERRQKRFAKYIQEYNFLRSLLKSLVL 483
           ER  K   + ++  + + S LKS  L
Sbjct: 429 ERYGKYRDRALEALDSIVS-LKSDRL 453


>gi|5669530|gb|AAD46374.1|AF162663_1 glucose-inhibited division protein [Myxococcus xanthus DK 1622]
          Length = 457

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 153/440 (34%), Gaps = 36/440 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++   V VIGGG AG E A   ++ G    L   K         +  +  L   + +R
Sbjct: 1   MADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLR 60

Query: 61  EID---ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +   A+  L   +     +     +  + PA  G     +RE +  A+   +L Q  +
Sbjct: 61  SDNPESAIGLLHAELRALGSLVLSAADANRVPA--GDALAVERERFSAAITESLLRQPGV 118

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           +++ GEV     +  ++             +T  LT+    R +      ++       +
Sbjct: 119 ELVAGEVDELPEDGPVVI------------ATGPLTSDALTRELERHVGTRL-YFYDSIA 165

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P  S  +  M   F   R   G         +    T+ ++   R I       K+    
Sbjct: 166 PILSADSIDMNVAFRQSRYGKGGGD----DYLNLPMTKDEYY--RFIAEVKAGQKVVPHA 219

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            E   +        ++ E          +  +YGP     + D   R G      + L  
Sbjct: 220 FEEPKSFEGCLPIEVMAE-------RGDNTLAYGPMKPVGLRDP--RTGHEPYAVVQLLM 270

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
           E +        G  T L    Q +   + IPGL++   +R G      +I+ P+ L   L
Sbjct: 271 EDVGGTSWNMVGFQTRLTWGEQKRIFSSFIPGLQQAEFLRMGQMHRNTFIDSPRLLAKDL 330

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K    L+ AGQI+G  GY E+AA G +  +    +    + +    T +  G ++  +
Sbjct: 331 SLKTEPRLYFAGQISGVEGYVESAACGYLVALALHARLTGTEFVPPPATTAM-GALLRHV 389

Query: 416 TSKGVLEPYRMFTSRAEYRI 435
           T +     Y    S   + I
Sbjct: 390 TGEAHPPDYPHQPSNISFGI 409


>gi|257469329|ref|ZP_05633423.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium ulcerans ATCC
           49185]
          Length = 448

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 168/487 (34%), Gaps = 65/487 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIG 51
           M N+   VI++G G AGCEAA   AK G    L   K+  +           + C+ ++G
Sbjct: 12  MNNKE--VIIVGAGLAGCEAAYQLAKRGIKVKLYEMKSKKMTEAHKNKYFAELVCSNSLG 69

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G       G +  E+  LD L+ ++AD            + PA +      DR+ + + +
Sbjct: 70  GDNLANASGLMKEELRKLDSLLIKIADK----------NRVPAGQALA--VDRDGFSIEI 117

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + + EN             E        + ++ ++  ++  LT+    + +  +   
Sbjct: 118 TEYLRNMEN------------VEIIEEEFTEIPEDQIVLIASGPLTSEILSKKIAELTHS 165

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                    +P  +L +  M+  +   R   G    ++                +   ++
Sbjct: 166 DHLYFYDAAAPIVTLESIDMEKAYRQSRYGKGEGEYINCPM------------NKEEYYA 213

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F    IT  +     T    +     M  ++  A+       +GP     + +   +  +
Sbjct: 214 FYNALITAERAPL-KTFEEEKLFEACM-PVERIAMTGERTLVFGPLKPKGLINP--KTDK 269

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
            +   + L  +     +    G  T L    Q +    IPGLE  + IR G      +I+
Sbjct: 270 MDYAVVQLRQDDKEGKLYNIVGFQTNLKWGEQKRVFSMIPGLENADFIRYGVMHRNTFID 329

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
             + L  TL+ K    ++ AGQI G+ GY  + + G +A IN A K             S
Sbjct: 330 SSRLLDETLKLKTKDNIYFAGQITGSEGYVSSISTGAMAAINIAHKLLGKAPFILDD-RS 388

Query: 407 YIGVMIDDLT-SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
            IG MI  +T  K   +P             +R  +   R          I +       
Sbjct: 389 AIGAMIKYVTEEKKNFQPMGPNFGIIRSLDGIRIRDKKER-------YNAISKIALDHLE 441

Query: 466 KYIQEYN 472
             I+E  
Sbjct: 442 SKIKELA 448


>gi|241761283|ref|ZP_04759371.1| gid protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374190|gb|EER63687.1| gid protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 446

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 163/484 (33%), Gaps = 61/484 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V +IGGG AG EAA   A       L           H T  +  + C+ +         
Sbjct: 4   VNIIGGGLAGSEAAWQLASRQIPVRLFEMRGREKTPAHSTDKLAELVCSNSFRSDDPNSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  +  L+  +AD   +              G     DRE +  A+   + +
Sbjct: 64  AVGVLHAEMRKMGSLIMMIADQHRV------------PAGSALAVDREGFAEAVTNRLQN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              +++ +  +     E  II             ++  LT+ +    +  +      +  
Sbjct: 112 HPLIEIHRERIDHIPDETTII-------------ASGPLTSDSLANAITELTGRDALSFF 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R   G         I     ++++            +K 
Sbjct: 159 DAIAPIVYRDSIDMDIAWFQSRWDKGDGH----DYINCPLNKEEYL--AFHAALLAGEKG 212

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              + E                 I+  A    D   +GP     ++D   R G      +
Sbjct: 213 DFHEWEKDTPY------FEGCMPIEVMADRGIDTLRFGPMKPVGLDDP--RTGRWPYGAV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +  R IPGLEK    R G      +I +P  L 
Sbjct: 265 QLRQDNALGTLWNMVGFQTKLKYAEQIRVFRMIPGLEKAEFARLGGMHRNSFIRSPVLLD 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK + +  AGQI G  GY E+A+ GL+AGI +A        +     +S +G ++
Sbjct: 325 EYLRLKKQTNIRFAGQITGCEGYIESASIGLLAGIFTAADKLDRK-VSSPPVESALGALL 383

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +T     + Y+           L P  ++    P   +   + ER +K   ++I E  
Sbjct: 384 GHITKNADPDHYQPMN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEA 437

Query: 473 FLRS 476
           FL+S
Sbjct: 438 FLKS 441


>gi|332558056|ref|ZP_08412378.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           WS8N]
 gi|332275768|gb|EGJ21083.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           WS8N]
          Length = 444

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/468 (18%), Positives = 157/468 (33%), Gaps = 45/468 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA++G    L   +               +   +  R    E +A+
Sbjct: 7   IVGAGMAGSEAAWQAAEMGVPVVLHEMRPKVGTFAHRTGQFAEMVCSNSFRSDDDERNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DR+ +  ++   + +   + V++ EVA
Sbjct: 67  GLLHWEMRAARGLIMEMAAAHRLPA--GGALAVDRDPFAESVTARLRAHPLISVVEEEVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +  N I             +T  LT+      +  +   +  A     +P       
Sbjct: 125 ELPSSGNWIV------------ATGPLTSSALAESLRALTGAEALAFFDAIAPIVYAETI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M+  +   R   G         I      +Q+        +F+   +   + E     T
Sbjct: 173 DMEVAWRQSRYDKGETEDERTAYINCPMNREQY-------EAFIDALLAAEKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   R  ++    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNA-HRPADKAYAVVQLRRDNKLGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    D +     ++ +G ++  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRMAAAEILGRD-LPPPPPETAMGALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
                      S +P N +  L P           + R K +    + 
Sbjct: 399 ----------KSFQPMNVNFGLFPPIDARGGRRGRKDRYKAYTDRAKA 436


>gi|92117349|ref|YP_577078.1| tRNA (uracil-5-)-methyltransferase Gid [Nitrobacter hamburgensis
           X14]
 gi|122417936|sp|Q1QMC9|TRMFO_NITHX RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|91800243|gb|ABE62618.1| gid protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 148/449 (32%), Gaps = 40/449 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V +IG G AG EAA   A  G    L   +   + +      +  L   +  R  DA   
Sbjct: 11  VHIIGAGLAGSEAAWQVANHGVRVVLHEMRPHRMTAAHQTGGLAELVCSNSFRSDDAANN 70

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  R  +  + PA  G     DR+ +  A+ + +     +++ + E
Sbjct: 71  AVGLLHAEMRRLGSLIMRCADANQVPA--GGALAVDRDGFSSAVTKALDDHPLIEINRTE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V G          +              LT+      +  +      A     +P     
Sbjct: 129 VDGLPPADWRNVIVAT----------GPLTSAPLAAAIRALTDESALAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    TE Q+     +      +K+  +  E    
Sbjct: 179 SIDMSKAWFQSRYDKVGPGGTGADYINCPMTEAQYH--AFVDALIEGEKVDFKDWEIDTP 236

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGL 300
             +          I+  A    +   +GP     +    D  V    +    + L  +  
Sbjct: 237 YFD------GCLPIEIMAERGRETLRHGPMKPVGLTNPHDPTV----KPYAIVQLRQDNR 286

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  RTIPGLE     R G      ++N PK L   L  + 
Sbjct: 287 LGTLYNIVGFQTKLKHGAQTRVFRTIPGLETAEFARLGGLHRNTFLNSPKLLDTQLRLRA 346

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              L  AGQ+ G  GY E+AA GL+AG+ +A  +          T + +G ++  +T   
Sbjct: 347 EPRLRFAGQMTGCEGYVESAAIGLIAGLYAASDARARSLAAPPPTTA-LGALLGHITGGH 405

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +        S      S +P N +  L P
Sbjct: 406 IE-------SIDAGPRSFQPMNINFGLFP 427


>gi|239616442|ref|YP_002939764.1| gid protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505273|gb|ACR78760.1| gid protein [Kosmotoga olearia TBF 19.5.1]
          Length = 437

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 158/477 (33%), Gaps = 51/477 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           + ++GGG AG EAA   A+ G    L   +      +        L   + ++ +   +A
Sbjct: 5   INIVGGGLAGSEAALSLAEKGIEVTLYEMRPKVKTDVHQTGYFAELVCSNSLKSVELTNA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L         I   +    + PA  G     DR+ +   +   I S   + V++ EV
Sbjct: 65  SGLLKEEARMLGSILLEIAERHRVPA--GKAFAVDRKTFSKEVTERIESSPYIHVVREEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +            + ++   +T  L++  F + +  +    +       SP  +  +
Sbjct: 123 KEIDLND---------EGTLWIIATGPLSSPAFEKWLSGLFGEDLF-FFDALSPIVAADS 172

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
              +  F   R   G+   L+   +  +  E+           F  + +  +     I  
Sbjct: 173 IDYRRCFVGDRYGKGSGDYLNCP-LDKETYER-----------FWNELVNAQVAP--IEN 218

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            + +      + ++  A    D   YGP     + D   + G      + L  E     +
Sbjct: 219 FSDKLLFDRCQPVEEIARTGIDALRYGPMKPVGLIDP--KTGSEPYAVVQLRKENKEGTL 276

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IP LE    +R G      Y+N PK L   L +K    L
Sbjct: 277 YNLVGFQTRLKWGEQKRVFRIIPALEHAEFVRYGVMHRNTYLNSPKILNRDLRSKGYPNL 336

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F  GQI G  GY EA   G    +N                 + +G +I+ +T       
Sbjct: 337 FFCGQITGLEGYVEAITSGRFVALNVMELVKTGSTFYLPE-KTMLGALINHIT------- 388

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
                     R+ L P  A+  L P     G    +R++   K  +    L+  LK 
Sbjct: 389 -------VSGRVPLSPVYANYGLLPPVKAKG----KRERNLKKAERAIEELKKFLKE 434


>gi|237744890|ref|ZP_04575371.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 7_1]
 gi|229432119|gb|EEO42331.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 7_1]
          Length = 434

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 173/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYCELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   + R + +
Sbjct: 64  ASGLMKEELRILGSLLIDVADK----------NRVPAGQALA--VDRDGFSEEVTRILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 MENIEIIEEEFIEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     +K++       ++F  + I
Sbjct: 160 DAAAPIVTFESIDMNRAYFQSRYGKG-----DGEYINCPMDKKEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--RTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   +N A +    +        S IG 
Sbjct: 322 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYVAMNVANRLENKEEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRNLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 420 SERAIEYLKN 429


>gi|220903788|ref|YP_002479100.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868087|gb|ACL48422.1| gid protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 455

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/489 (19%), Positives = 164/489 (33%), Gaps = 59/489 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----G 54
           + V+GGG AGCE A   A+ G +  L   K            +  + C+ ++       G
Sbjct: 6   IAVVGGGLAGCECALRLARSGHTVELFEQKPLFRSPAHVSDHLAELVCSNSLRSDEPTSG 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ AL       ADA  +              G     DRE +  +M   + ++
Sbjct: 66  VGLLKAEMRALGSQFMEAADACRV------------PAGKALAVDREAFARSMSERVEAE 113

Query: 115 ENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            N+ +++ +V   +             +   +  +   + +      +      K     
Sbjct: 114 ANIRLVRQQVQSLDDAALEPFKG----EGRAVIVAAGPMASDGLSASLAGALGEKHCYFY 169

Query: 174 MGDSPSNSLFNSFMKFDFDTGRL-KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
              +P     +  M   F   R  +    A  +G  +    + +++  E          K
Sbjct: 170 DAIAPIIWTHSLNMDIVFRASRYGQENGEAEGEGDYLNCPMSREEY--EVFYQALLDAQK 227

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +   + E             + E             ++GP       D   R G R    
Sbjct: 228 VAAHEFEQEKHFEGCMPVETLAERGHR-------TLTFGPLKPVGFVDP--RTGRRPWAI 278

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E  N+D     G  T L +  Q +  R +PGLEK    R G      Y+N P  L
Sbjct: 279 LQLRAENANSDTCNLVGCQTKLTQGEQARVFRLVPGLEKAEFARFGSMHRNTYVNAPHVL 338

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K   G++LAGQI G  GY E+AA GL   +    ++  +D +     +S  G +
Sbjct: 339 DADLSLKARPGIYLAGQITGVEGYVESAASGLWLALLLDARARGID-LERPPAESAFGAL 397

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +  L +                    +P NA   L P   +     +R+    A+  + +
Sbjct: 398 LGHLQTPA---------------KRFQPSNAHFGLMPDLGERARKKDRKALYSARAQEAF 442

Query: 472 NFLRSLLKS 480
                 LK+
Sbjct: 443 APWLHELKT 451


>gi|159030189|emb|CAO91081.1| gid [Microcystis aeruginosa PCC 7806]
          Length = 445

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 104/495 (21%), Positives = 169/495 (34%), Gaps = 69/495 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIG 51
           MI+    + VIGGG AG EAA   A+ G    L   +            +  + C+ + G
Sbjct: 1   MIDHP--IHVIGGGLAGTEAAWQIAQAGIPVILHEMRPIRSSPAHHSQFLAELVCSNSFG 58

Query: 52  GLGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +      G L  E+  L+ L+   AD                  G     DR ++   +
Sbjct: 59  AMAVDRATGLLHEELRRLNSLVIAQADQH------------SVPAGGALAVDRGVFSRNL 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +   + + + E+     +      +V+            LT+      + +   L
Sbjct: 107 TEILANHPLVTLKRQEITEIPRDGI----VVLTTG--------PLTSAALAADLQNFAGL 154

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
              +     SP     +      F   R   G  A L+               +R     
Sbjct: 155 DYLSFFDAASPIILGESIDRSIAFLASRYDKGEAAYLNCPM------------DREQYLH 202

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           F  +     Q E                 I+  A    D   +GP     + D   R+ +
Sbjct: 203 FWQELKQAEQAELKDFERENAKFFEACLPIEELASRGEDTMRFGPLKPVGLADP--RYPD 260

Query: 288 -RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            R    I L  E     +    G  T L    Q +  R IPGLEK   +R G   +  +I
Sbjct: 261 QRPYAVIQLRMEDKAGQLWNMVGFQTNLKWGEQTRVFRLIPGLEKAEFVRMGVMHKNTFI 320

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N P+ L  +L+ K    L  AGQ+ GT GY  AAA G +AG N+AR +  L+ +    T 
Sbjct: 321 NSPQLLSSSLQFKSRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLALGLETVTLP-TT 379

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + +G + + ++S    EP         + I          L     K+    ER  +   
Sbjct: 380 TMMGSLFEFISS---AEPKHFQPMPPNFGI----------LPNFTRKIRNKRERYGQYAD 426

Query: 466 KYIQEYNFLRSLLKS 480
           + +Q+     + LK+
Sbjct: 427 RSLQDLEAWLNQLKT 441


>gi|86138400|ref|ZP_01056974.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
 gi|85824925|gb|EAQ45126.1| glucose-inhibited division protein A [Roseobacter sp. MED193]
          Length = 447

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 162/465 (34%), Gaps = 49/465 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G +  +   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAANMGVNVVIHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +   +  ++ +  N+ V   E+ 
Sbjct: 67  GLLHWEMRAANGVIMATAEEHRLPA--GGALAVDRDPFAETVTAKLKAHPNITVSYEEIT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                         +D   I   T  LT+GT  + +      +  A     +P     + 
Sbjct: 125 ALP-----------EDGHWIFA-TGPLTSGTLGQAIQAETGAEALAFFDAIAPIIYTDSI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +    TE Q+  E  I      DK    + E      
Sbjct: 173 DMSQAWMQSRYDKGETEEERTAYLNCPMTEAQY--EAFIDALLAADKTEFHEGETAGYFD 230

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTDV 304
                 ++ E          +   +GP     + +      + +    + L  +     +
Sbjct: 231 GCLPIEVMAE-------RGRETLRFGPMKPVGLTNP--HQPDVKPYAVVQLRRDNALGTL 281

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q + +R IPGLE+ +  R G      ++N P  L   +  K    L
Sbjct: 282 FNIVGFQTKMKYGAQTEVLRMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLKSKPHL 341

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+AA GL+AG  +A +   L+     + DS +G +I  +T       
Sbjct: 342 RFAGQITGVEGYVESAAMGLLAGRMAAAEILGLELPQVPQ-DSAMGALIHHITGGAEA-- 398

Query: 424 YRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKY 467
                       + +P N +  L  P+    G  G RR ++    
Sbjct: 399 -----------KTFQPMNVNFGLFQPV---EGLKGGRRGRKDRYK 429


>gi|310778329|ref|YP_003966662.1| gid protein [Ilyobacter polytropus DSM 2926]
 gi|309747652|gb|ADO82314.1| gid protein [Ilyobacter polytropus DSM 2926]
          Length = 436

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 176/487 (36%), Gaps = 72/487 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH 57
           +V++IG G AG EAA   AK G    L           HK+   G + C+ ++G     +
Sbjct: 4   EVVIIGAGLAGSEAAYQLAKRGIKVKLYEMRPLKNTEAHKSEKFGELVCSNSLGSNATSN 63

Query: 58  ----LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
               +  E+  L  L+  VAD            K     G     DRE +   +   + +
Sbjct: 64  ASGLMKEELRQLGSLLVEVAD------------KNRVPAGQALAVDREGFSKEITETLEN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E+     E      IV+        ++  L++ +    +  I K +     
Sbjct: 112 MENIEIIREELTEIPEE-----GIVL-------IASGPLSSDSISEEIKKITKDEHLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +   +  +   R   G     DG+ I      +++ +       F    I
Sbjct: 160 DAAAPIIAFDSIDKEKVYFQSRYDKG-----DGEYINCPMNIEEYTN-------FYNALI 207

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQ 292
           T  +     T    +     M  ++  A        +GP     + +   R  + ++   
Sbjct: 208 TAERAPL-KTFEEEKLFEACM-PVEKMAERGEKTLLFGPLKPKGLTNP--RHPDIKDYAV 263

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-EL 351
           I L  +     +    G  T L    Q +    IPGLE  + +R G      +IN    L
Sbjct: 264 IQLRQDDKEGRLYNMVGFQTNLKWGEQKRVFSMIPGLENADFVRYGVMHRNTFINSTKLL 323

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  K    ++ AGQI G+ GY  A A G++A IN A +             S IG +
Sbjct: 324 KDTLNLKSNENIYFAGQITGSEGYVAAMATGMMAAINIANRLEGKKEFVLDD-RSAIGAI 382

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           I  +T               E + + +P   +  +    ++   I ++R++      +  
Sbjct: 383 IKYIT---------------EEKKNFQPIGPNIGII-RPLEGKKIRDKRERYTKVAERAL 426

Query: 472 NFLRSLL 478
           ++L+  L
Sbjct: 427 DYLKEKL 433


>gi|255263279|ref|ZP_05342621.1| tRNA:M(5)U-54 methyltransferase [Thalassiobium sp. R2A62]
 gi|255105614|gb|EET48288.1| tRNA:M(5)U-54 methyltransferase [Thalassiobium sp. R2A62]
          Length = 446

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 157/472 (33%), Gaps = 52/472 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G +  +   +            +G +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANAGLNVVIHEMRPKVETFAHQTGDLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  K PA  G     DRE +  ++   + S  N+ V   E+ 
Sbjct: 67  GLLHWEMRAAGGLIMATADKHKLPA--GGALAVDREPFAQSVTAALKSHPNISVSYEEIT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              T+ + I             +T  LT+G     + +       A     +P     + 
Sbjct: 125 ELPTDGHWII------------ATGPLTSGNLADAIANETGKDALAFFDAIAPIIYFDSI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +    T  Q+  E  I     +DK   ++ E      
Sbjct: 173 DMSQAWMQSRYDKGETEEERTAYLNCPMTRDQY--EAFIDALLASDKTEFKEGETAGYFD 230

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGLNT 302
                 ++ E          +   +GP     +    D       +    + L  +    
Sbjct: 231 GCLPIEVMAE-------RGRETLRFGPMKPVGLTNANDPE----NKPYAVVQLRRDNALG 279

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q   +R IPGL+     R G      ++N P  L   +  K   
Sbjct: 280 TLYNIVGFQTKMKYGAQTDVLRMIPGLQDAQFARLGGIHRNTFLNSPTLLDGQMRLKSKP 339

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L  AGQI G  GY E+AA GL+A   +  +    +      T +  G ++  +T     
Sbjct: 340 HLRFAGQITGVEGYVESAAMGLLAARLAVAEITGQELDPVPHTTAM-GALVTHITGGADA 398

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIG-ERRQKRFAKYIQE 470
                         + +P N +  L P   G+K G  G + R K +    + 
Sbjct: 399 -------------KTFQPMNVNFGLFPPVEGLKGGRKGRKDRYKAYTDRAKA 437


>gi|218245673|ref|YP_002371044.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 8801]
 gi|257058720|ref|YP_003136608.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 8802]
 gi|218166151|gb|ACK64888.1| gid protein [Cyanothece sp. PCC 8801]
 gi|256588886|gb|ACU99772.1| gid protein [Cyanothece sp. PCC 8802]
          Length = 459

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 165/486 (33%), Gaps = 75/486 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----GKG 56
           VIGGG AG EAA   A+ G    L           H +  +  + C+ + G +      G
Sbjct: 11  VIGGGLAGTEAAWQIAQAGVPVILYEMRPLRTSPAHHSEELAELVCSNSFGAMSSDRAAG 70

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  L  ++ + AD                  G     DR ++  A+ + + +   
Sbjct: 71  LLHEELRRLGSIIIQTADQH------------SVPAGGALAVDRGVFSHALTQTLDNHPL 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + + +  +    +E      +V+            LTT      +     +   +     
Sbjct: 119 ITLKRAAIGQIPSEGI----VVLTTG--------PLTTPDLAEDLQRFTGMDYLSFFDAA 166

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +      F   R   G  A L         T++Q+         F  +     
Sbjct: 167 SPIIVGDSINRDIAFLASRYDKGEAAYL-----NCPLTKEQY-------LHFREELCQAE 214

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--------- 287
           Q E                 I+  A    D   YGP     + D   R G+         
Sbjct: 215 QAELKDFERETAQFFEGCLPIEELAKRGEDTMRYGPLKPVGLFDS--RLGDFRDPENKGK 272

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  E  N  +    G  T L    Q +  R IPGLE    +R G      +IN
Sbjct: 273 RPYGVVQLRQEDKNGQLWNMVGFQTNLKWGEQKRIFRLIPGLETAEFVRMGVMHRNTFIN 332

Query: 348 -PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            P+ L  TL+ K    L  AGQ+ GT GY  AAA G +AG N+AR + +LD +    T +
Sbjct: 333 SPQLLEATLQFKSRPTLLAAGQLIGTEGYSAAAAGGWLAGTNAARLALRLDPLKMPET-T 391

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
            +G + + ++S     P         + I          +  +  K+G   ER  K   +
Sbjct: 392 MMGALFEFISSAS---PKHFQPMPPNFGI----------IPELSHKIGNKRERYGKYRDR 438

Query: 467 YIQEYN 472
            + +  
Sbjct: 439 ALADLE 444


>gi|126462054|ref|YP_001043168.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166989564|sp|A3PJ80|TRMFO_RHOS1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|126103718|gb|ABN76396.1| gid protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 444

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 157/468 (33%), Gaps = 45/468 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA++G    L   +               +   +  R    E +A+
Sbjct: 7   IVGAGMAGSEAAWQAAEMGVPVVLHEMRPKVGTFAHRTGQFAEMVCSNSFRSDDDERNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DR+ +  ++   + +   + V++ EVA
Sbjct: 67  GLLHWEMRAARGLIMEMAAAHRLPA--GGALAVDRDPFAESVTARLRAHPLISVVEEEVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +  N I             +T  LT+      +  +   +  A     +P       
Sbjct: 125 ELPSSGNWIV------------ATGPLTSSALAESLRALTGAEALAFFDAIAPIVYAETI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M+  +   R   G         I      +Q+        +F+   +   + E     T
Sbjct: 173 DMEVAWRQSRYDKGETEDERTAYINCPMNREQY-------EAFIDALLAAEKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   R  E+    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNS-HRPAEKAYAVVQLRRDNKLGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    D +     ++ +G ++  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRMAAAEILGRD-LPPPPPETAMGALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
                      S +P N +  L P           + R K +    + 
Sbjct: 399 ----------KSFQPMNVNFGLFPPIDARGGRRGRKDRYKAYTDRAKA 436


>gi|283853638|ref|ZP_06370872.1| gid protein [Desulfovibrio sp. FW1012B]
 gi|283570971|gb|EFC18997.1| gid protein [Desulfovibrio sp. FW1012B]
          Length = 439

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 95/471 (20%), Positives = 160/471 (33%), Gaps = 51/471 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           + +IGGG AGCE A   A+ G ++ +   K +       +P +  L   + +R    + A
Sbjct: 3   IAIIGGGLAGCECALALARAGVASTVFEAKPARFSPAHVSPQLAELVCSNSLRSDEPVTA 62

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +A        V      PA  G     DREL+  AM   I ++  + + + E+
Sbjct: 63  VGLLKVEMAALGSAVIAVARETAVPA--GKALAVDRELFAAAMTARIEAEPLVTLTRQEI 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +         V+     +   ++  + G  + G                +P  +  +
Sbjct: 121 PTLDDPALTGFEAVVVAAGPLASESLAESLGAAIGGE-------SLYFYDAIAPIVATDS 173

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   F   R + G     +G          Q   +  +       K+ +R+ E  +  
Sbjct: 174 VDMDKAFWASRWQEG-----EGDYCNCPLD--QDEYKAFLAALLEARKVPSREFEKELHF 226

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   + E  +          ++GP     + D   R G R    + L PE      
Sbjct: 227 EGCLPIETMAERGER-------TLTFGPMKPVGLTDP--RTGRRPYAVVQLRPENAAKST 277

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
           +   G  T L    Q +  R IP L      R G      ++N PK L   LE     G+
Sbjct: 278 LNLVGFQTKLAYGEQERVFRLIPALHAAEFTRLGSIHRNTFVNAPKVLNDRLELVARPGV 337

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQI G  GY E+AA GL  G     +  +   I     ++ +G ++  L +      
Sbjct: 338 YLAGQITGVEGYVESAACGLWLGTQLGARIARGLNIAPPPVEAALGALLGHLRTPA---- 393

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
                         +P N +  LTP         E R K+  + +      
Sbjct: 394 -----------KKFQPSNVNFGLTPPL-------EERMKKANRKMAYPERA 426


>gi|317970344|ref|ZP_07971734.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. CB0205]
          Length = 367

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 129/394 (32%), Gaps = 57/394 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A+ G    L+          H +S    + C+ + G       
Sbjct: 9   VLVIGAGLAGTEAAWQIARAGIPVRLVEMRPVRRSPAHHSSEFAELVCSNSFGALSSDRA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   AD                  G     DR  Y  A+   +   
Sbjct: 69  AGLLQEELRRLGSLVIGTADQH------------SVPAGGALAVDRGRYSAALTESLEQH 116

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V++ E       + I         S      +   TG   RG  H       A  +
Sbjct: 117 PLVTVVRDEQLALPGPEQITVLATGPLTSEPLAEDLRAFTG---RGDCHFFD---AASPI 170

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  L  +F    +D G          D   I     ++QF        +F    + 
Sbjct: 171 VEGESIDLSIAFRASRYDKG----------DADYINCPMDKEQF-------LAFREALLA 213

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E         T       I+  A    D   YGP     + D          VR  
Sbjct: 214 AEQAELKDFEKENATFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDVNDRDVRRA 273

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E  +  +    G  T L    Q + +R IPGLE    +R G      ++
Sbjct: 274 KRAYAVVQLRQEDKDGRLWNLVGFQTNLKWGEQKRVLRMIPGLENAEFVRFGVMHRNTFL 333

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
             P+ L PTL+ +    L  AGQI GT GY  A 
Sbjct: 334 EAPQLLDPTLQFRSRPTLLAAGQITGTEGYAAAV 367


>gi|304436894|ref|ZP_07396858.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370093|gb|EFM23754.1| tRNA:M(5)U-54 methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 440

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 145/450 (32%), Gaps = 58/450 (12%)

Query: 35  THKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            HKT     + C+ ++   G     G L  E+  ++ ++ + AD   +            
Sbjct: 40  AHKTDAFAELVCSNSLRAAGLMNAVGVLKEEMRRMNSIIMQAADHTAV------------ 87

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
             G     DRE +   +   I+    + V   E+    +  + +  +          ++ 
Sbjct: 88  PAGGALAVDREAFSAYVTERIVQHPLIHVHHEEITELPSTDDSVLIV----------ASG 137

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
            LT G     +  +            +P  S  +  M   +   R   G PA ++     
Sbjct: 138 PLTDGQLAEAIRRLLGDDGLYFYDAAAPLVSFSSIDMNVAYRASRYGKGEPAYINCP--- 194

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
                +   D          +       E  I         ++       A    D   Y
Sbjct: 195 ---MNEAEYDA-FWQALTTAEAAETHNFEKAIFFEGCMPVEVM-------AARGRDTLLY 243

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GP     +E  +   GER    + L  +     +    G  T L    Q +  + IPGL 
Sbjct: 244 GPLKPVGLEHPV--TGERPYAVVQLRQDNAAGSIYNIVGFQTHLKWPEQRRVFQMIPGLA 301

Query: 331 KVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
               +R G      +I+ P+ L PT +      L  AGQ+ G  GY E+AA GLVAG N+
Sbjct: 302 AAEFLRYGVMHRNSFISAPRHLRPTFQYTGDDRLLFAGQMTGVEGYVESAASGLVAGKNA 361

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR       + F  +  + G +   +T+                    +P N +  L P 
Sbjct: 362 ARLVQGESPVVFPVSTCH-GALAHYITTCDPEH--------------FQPMNINFGLLPP 406

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
              L     + +K+     +    L   L+
Sbjct: 407 LADLPRRTRKPEKKRMLAERALEDLEHFLE 436


>gi|313896922|ref|ZP_07830469.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974369|gb|EFR39837.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 237

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 96/227 (42%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IV+G GHAG EAA  AA+LG  T  +T     I  M CNP++GG GK HLVREIDA
Sbjct: 10  DYDIIVVGAGHAGVEAALAAARLGRRTLCVTLSLDNIAMMPCNPSVGGPGKSHLVREIDA 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G MG  AD A IQ R+LN  KGPAV   R QAD+ LY+  M+  + +  NLDV Q  V
Sbjct: 70  LGGEMGIAADRASIQRRLLNTGKGPAVHALRMQADKFLYQRIMKETLENTPNLDVRQLLV 129

Query: 125 AGFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               +E       ++ I  +    +    V+L TGT+LRG I +G+     G  G  P+ 
Sbjct: 130 TELLSEETEDGRRVTGICCETGEQLAARAVILATGTYLRGRIILGETIYDGGPNGQRPAM 189

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            L +S         R KTGTPAR+D +T+ + +T+ Q       PF 
Sbjct: 190 QLSDSLRALGLRLMRFKTGTPARVDARTVDFARTQVQEGRRARRPFP 236


>gi|304321786|ref|YP_003855429.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
 gi|303300688|gb|ADM10287.1| glucose-inhibited division protein A [Parvularcula bermudensis
           HTCC2503]
          Length = 461

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/493 (19%), Positives = 158/493 (32%), Gaps = 68/493 (13%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           +IG G AG EAA  AA+ G S  LI  + + +           L   +  R  DA    +
Sbjct: 6   IIGAGLAGSEAAWQAAEAGLSVTLIEMRPTRMTEAHRTEGCAELVCSNSFRSDDAETNAV 65

Query: 70  GRVADA-AGIQFRVLNVKKG-PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           G + +        +LN         G     DR+ +  A+   + +   + + + EV   
Sbjct: 66  GLLHEEMRRCGSLILNAADTHQVPAGGALAVDRDGFSDAVTAALTAHPRITLERREVTAL 125

Query: 128 NTEKN--IISSIVMQDNSMIRCSTVVLTTGTF-----LRGVIHIGKLKIPAG----RMGD 176
                  II++  +    +    T V+          +  +IH   +         R   
Sbjct: 126 PAPGTLAIIATGPLTSGPLAEAMTEVVGEDDLAFFDAIAPIIHKDSIDFSKAWFQSRYDK 185

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK-QFADERLIPFSFMTDKITN 235
                    ++              A L+G+T  + + E      E  +P   M      
Sbjct: 186 PGPGGSGKDYLNLAMTEAEYDRFLSALLEGETTEFKEWETSTPYFEGCLPIEVM------ 239

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
                                    A    +   +GP     + +      E+    + L
Sbjct: 240 -------------------------AARGRETLRFGPMKPVGLTNP--HKDEKPFAVVQL 272

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L    Q    R IPGLE     R G      +IN PK L   
Sbjct: 273 RQDNALGTLFNMVGFQTKLKYGAQGDVFRLIPGLENARFARLGGIHRNTFINSPKVLTDD 332

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L  K   GL  AGQ+ G  GY E+AA GL+AG  +A ++         RT + +G +   
Sbjct: 333 LSAKAQPGLRFAGQMTGVEGYLESAAIGLLAGRFAAAEARGEAPALPPRTTA-LGALHHH 391

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFA 465
           +T   V             + S +P N +  L P          G +L    + R K+  
Sbjct: 392 ITQGHVP----------GEKGSFQPMNVNFGLFPPMEAPRQDEEGRRLRGKEKGRAKKRL 441

Query: 466 KYIQEYNFLRSLL 478
              +    L S +
Sbjct: 442 MSARALADLESWI 454


>gi|260752816|ref|YP_003225709.1| tRNA (uracil-5-)-methyltransferase Gid [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552179|gb|ACV75125.1| gid protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 446

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/484 (19%), Positives = 163/484 (33%), Gaps = 61/484 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG-----L 53
           V +IGGG AG EAA   A       L           H T  +  + C+ +         
Sbjct: 4   VNIIGGGLAGSEAAWQLASRQIPVRLFEMRGREKTPAHSTDKLAELVCSNSFRSDDPNSN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  +  L+  +AD   +              G     DRE +  A+   + +
Sbjct: 64  AVGVLHAEMRKMGSLIMMIADQHRV------------PAGSALAVDREGFAEAVTNRLQN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              +++ +  +     E  II             ++  LT+ +    +  +      +  
Sbjct: 112 HPLIEIHRERIDYIPDETTII-------------ASGPLTSDSLANAITELTGRDALSFF 158

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R   G         I     ++++            +K 
Sbjct: 159 DAIAPIVYRDSIDMDIAWFQSRWDKGDGH----DYINCPLNKEEYL--AFHAALLAGEKG 212

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
              + E                 I+  A    D   +GP     ++D   R G      +
Sbjct: 213 DFHEWEKDTPY------FEGCMPIEVMADRGIDTLRFGPMKPVGLDDP--RTGRWPYGAV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELF 352
            L  +     +    G  T L    Q +  R IPGLEK    R G      +I +P  L 
Sbjct: 265 QLRQDNALGTLWNMVGFQTKLKYAEQIRIFRMIPGLEKAEFARLGGMHRNSFIRSPVLLD 324

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  KK + +  AGQI G  GY E+A+ GL+AGI +A        +     +S +G ++
Sbjct: 325 EYLRLKKQTNIRFAGQITGCEGYIESASIGLLAGIFTAADKLDRK-VSSPPVESALGALL 383

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             +T     + Y+           L P  ++    P   +   + ER +K   ++I E  
Sbjct: 384 GHITKNADPDHYQPMN----INFGLFPPISEKH--PKKQRKAMMAERARKALDQWISEEA 437

Query: 473 FLRS 476
           FL++
Sbjct: 438 FLKN 441


>gi|42524778|ref|NP_970158.1| tRNA (uracil-5-)-methyltransferase Gid [Bdellovibrio bacteriovorus
           HD100]
 gi|81616190|sp|Q6MHW5|TRMFO_BDEBA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39576988|emb|CAE78217.1| glucose-inhibited division protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 440

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 163/493 (33%), Gaps = 73/493 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           I ++  + V+G G AG E A   A +G S  L           HKT     + C+ + G 
Sbjct: 4   ITQNQKITVVGAGLAGSECALQLADMGYSVVLYEMRDKTMTPAHKTHKFAELVCSNSFGS 63

Query: 53  LGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           LG+    G L  E   L+  + + A  A                G     DRE++   M 
Sbjct: 64  LGEHSAPGQLKWEAKKLNSHILQAAFEA------------QVPAGQALGMDREVFSAIMT 111

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++ +  N+++    V   N                   +T  LT       +      +
Sbjct: 112 EKVKNHPNIEIRNDVVKSLNDIPRPAV-----------IATGPLTHDDLAESMRQHFGDE 160

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P     +   +  +   R   GT    +      +K E     E +     
Sbjct: 161 FLYFFDAIAPIIDADSINTEIAWKADRYDKGTGDYYNCPM---NKEEYNRFIEEIQKA-- 215

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
              KI  +  E            ++++              +GP     ++D   R G  
Sbjct: 216 --RKIEPKDFETTDFFEGCMPIEVMVD-------RGPQTLRFGPMKPIGLDDP--RTGRY 264

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L  +          G  T +    Q +  R IPGLE    ++ G      +IN 
Sbjct: 265 PWAVVQLRQDNKEGTAYNMVGFQTRMAYGEQVRVFRMIPGLENAEFLKLGSIHRNLFINS 324

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           PK L   L +K    LF AGQI G  GY E+   GL+      +K            +S 
Sbjct: 325 PKRLNKDLSSKNDPWLFFAGQITGVEGYFESTCTGLMVSRFLNQKLKDQ-PFNPPPRESA 383

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
            G +++ +T            +RAE+    +P N +  L P       + E+ + +  + 
Sbjct: 384 FGSLLEAITD----------PTRAEH---FQPTNINFALLP------PLAEKERDKTLRK 424

Query: 468 IQEYNFLRSLLKS 480
            ++    R++++ 
Sbjct: 425 EKQIAIARNVMEQ 437


>gi|254465537|ref|ZP_05078948.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206686445|gb|EDZ46927.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 479

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 153/474 (32%), Gaps = 67/474 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    +   +            +G +   +  R    E +A+
Sbjct: 39  IVGGGMAGSEAAWQAANMGVQVVIHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 98

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  + PA  G     DRE +   +   + +  N+ V   E+ 
Sbjct: 99  GLLHWEMRQANGLIMTTADQHRLPA--GGALAVDREPFAETVTARLKAHPNITVSYEEIT 156

Query: 126 GFNTEKNII--SSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
           G   + + I  +  +   Q    I+  T       F      +    I   R        
Sbjct: 157 GLPADGHWIFATGPLTSPQLGKAIQAETGAEALAFFDAIAPIVYAESIDMSRAWMQSRYD 216

Query: 182 LFNS------FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              +      ++    D  + +    A L      + + E     +  +P   M ++   
Sbjct: 217 KGETEEERTAYLNCPMDKEQYEAFIDALLSADKTEFHEGETAGYFDGCLPIEVMAER--- 273

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-QIF 294
                                         +   +GP     + +      +   H  + 
Sbjct: 274 ----------------------------GRETLRHGPMKPVGLTNP--HQPDVKAHAVVQ 303

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T +    Q +  R IPGLE  +  R G      +IN P  L  
Sbjct: 304 LRRDNALGTLFNIVGFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFINSPTLLDA 363

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            +  K    +  AGQI G  GY E+AA GL+AG  +A +    +     + DS +G +I 
Sbjct: 364 QMRLKSKPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGRELPEVPQ-DSAMGALIH 422

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
            +T                   + +P N +  L       G  G RR ++    
Sbjct: 423 HITGGAEA-------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 461


>gi|117926758|ref|YP_867375.1| gid protein [Magnetococcus sp. MC-1]
 gi|205830339|sp|A0LDC6|TRMFO_MAGSM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|117610514|gb|ABK45969.1| gid protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 90/486 (18%), Positives = 162/486 (33%), Gaps = 65/486 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           + +IG G AG EAA   A+      L   +  T+         G L   + +R  D    
Sbjct: 4   ITIIGAGLAGSEAAWQLAQRNIPVRLYEMRPHTMTPAHQTDHCGELVCSNSLRSDDHSNS 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     +  R  +  + PA  G     DR  +  A+   +     +++I+ E
Sbjct: 64  AVGLLHQELRGLDSLIMRCADQHRVPA--GGALAVDRHAFSAAITEALEQHPLIELIRQE 121

Query: 124 VAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGVI-HIGKLKIPAGRMGDSP 178
           +     E++    I S  +            V     F   +   +    I   +     
Sbjct: 122 IVTPPMEEDGYTIIASGPLTAGGLAHWIEAQVGKRMAFFDAIAPIVSHDSIDFSKAWKQS 181

Query: 179 SNSLF--NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK-QFADERLIPFSFMTDKITN 235
                  N ++    D  +  T   A L+G+ + + + E      +  +P   M ++   
Sbjct: 182 RYDKGDGNDYINCAMDEAQYHTFVQALLEGEKVAYKEFEANTPYFDGCLPIEVMAER--- 238

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
                                         +   YGP     + +      E++   + L
Sbjct: 239 ----------------------------GVETLRYGPMKPVGLTNP--HKAEKSYAIVQL 268

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPT 354
             +     +    G  T L    Q +   TIPGLE+   +R G      +IN P  L  T
Sbjct: 269 RQDNKLGTLWNMVGFQTKLSWPAQKRIFATIPGLEQAEFVRLGALHRNTFINSPTLLSET 328

Query: 355 LETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           L+ K    L  AGQI G  GY E+ A GL+AG   A K    + +      + +G ++  
Sbjct: 329 LQLKTQPRLLFAGQITGVEGYVESTACGLMAGRIVAHKMRG-EAVSIPPQTTALGALMRH 387

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           +T +                   +P N +  L P         ++R++ +A   +    +
Sbjct: 388 ITGEADATH-------------FQPMNVNFGLFP-NFTERVPKKQRKEAYA--QRALTHM 431

Query: 475 RSLLKS 480
           +  L+ 
Sbjct: 432 QQWLQE 437


>gi|238926946|ref|ZP_04658706.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Selenomonas flueggei ATCC 43531]
 gi|238885180|gb|EEQ48818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Selenomonas flueggei ATCC 43531]
          Length = 440

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 147/450 (32%), Gaps = 58/450 (12%)

Query: 35  THKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            HKT     + C+ ++   G     G L  E+  ++ ++ + AD   +            
Sbjct: 40  AHKTDAFAELVCSNSLRAAGLMNAVGVLKEEMRRMNSIIMQAADHTAV------------ 87

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
             G     DRE +   +   I     + V   E+    +  + +  +          ++ 
Sbjct: 88  PAGGALAVDREAFSSYVTERITQHPLIHVHHEEITELPSTDDSVLIV----------ASG 137

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
            LT G  +  +  +            +P  S  +  M   +   R   G PA ++     
Sbjct: 138 PLTDGRLVDAIRRLLGDDGLYFYDAAAPLISFSSIDMNVAYRASRYGKGEPAYINCP--- 194

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
                +   D          +       E  I         ++       A    D   Y
Sbjct: 195 ---LNEAEYDA-FWQALTTAEAAETHDFEKAIFFEGCMPVEVM-------ASRGRDTLLY 243

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GP     +E  I   GER    + L  +     +    G  T L    Q +  R IPGL 
Sbjct: 244 GPLKPVGLEHPI--TGERPYAVVQLRQDNAAGSIYNIVGFQTHLKWPEQRRVFRMIPGLA 301

Query: 331 KVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
               +R G      +I+ P+ L PT +      L  AGQ+ G  GY E+AA GLVAG N+
Sbjct: 302 AAEFLRYGVMHRNSFISAPRHLRPTFQYAGNDRLLFAGQMTGVEGYVESAASGLVAGKNA 361

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           AR +     + F  +  + G +   +T+                    +P N +  L P 
Sbjct: 362 ARLARGESPVLFPTSTCH-GALAHYITTCEPEH--------------FQPMNINFGLLPP 406

Query: 450 GMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
              L     + +K+     +    L+  L+
Sbjct: 407 LADLPRRTRKPEKKKMLAERALENLKHFLE 436


>gi|115379513|ref|ZP_01466607.1| gid protein [Stigmatella aurantiaca DW4/3-1]
 gi|310822344|ref|YP_003954702.1| methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase, trmfo
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363491|gb|EAU62632.1| gid protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395416|gb|ADO72875.1| Methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase, TrmFO
           [Stigmatella aurantiaca DW4/3-1]
          Length = 450

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 156/468 (33%), Gaps = 49/468 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V VIGGG AG E A   A+ G +  L   K         +  +  L   +  R  +   A
Sbjct: 8   VTVIGGGLAGSECAWQLARRGVAVTLREMKPQKRSPAHKSDQLAELVCSNSFRSDNPESA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE +  A+ + +     ++V+ GEV
Sbjct: 68  IGLLHAELRAVDSLILGRADTHRVPA--GDALAVDREQFSGAVTQAVREHPLVEVVGGEV 125

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   ++             +T  LT+    R +      K+       +P  S  +
Sbjct: 126 ETLPDGVVVV-------------ATGPLTSDALTRELERYVGQKL-YFYDSIAPIVSGDS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             ++  F   R   G     D   +  ++ E      R I       K+T    E     
Sbjct: 172 IDLEIAFRQSRYGKGDGD--DYLNLPMNREEY----YRFIAEVKAGQKLTPHSFEEPKYF 225

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++ E          +  ++GP     + D   R G+     + L  E      
Sbjct: 226 EGCLPIEVMAE-------RGDETLAFGPMKPVGLMDP--RTGQAPYAVVQLRMEDRAGTA 276

Query: 305 VYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
               G  T L    Q +   T IPGL+    +R G      +I+ P+ L   L  K    
Sbjct: 277 WNMVGFQTRLTWGEQKRIFTTCIPGLKDAEFLRMGQIHRNTFIDSPRLLDKDLSLKAERR 336

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           LF AGQI G  GY E++A G +  +    +    + +    T + +G +   +T +    
Sbjct: 337 LFFAGQITGVEGYVESSACGYLTALAVQARLMGHEFVPPPATTA-LGSLYRHVTGEAHPP 395

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            Y    S           N    L P  +        ++ R+A   QE
Sbjct: 396 DYPHQPS-----------NIIFGLFP-PLPGRVKKADKRARYAARAQE 431


>gi|126729677|ref|ZP_01745490.1| glucose-inhibited division protein A [Sagittula stellata E-37]
 gi|126709796|gb|EBA08849.1| glucose-inhibited division protein A [Sagittula stellata E-37]
          Length = 452

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 154/432 (35%), Gaps = 30/432 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           + ++  + ++GGG AG EAA  AA +G S  L   +            +G +   +  R 
Sbjct: 1   MAKTDTLHIVGGGMAGSEAAWQAANMGVSVVLHEMRPQVKTFAHRTGNMGEMVCSNSFRS 60

Query: 61  ---EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
              E +A+  L   +  A G+     +  + PA  G     DR+ +  A+ + +    N+
Sbjct: 61  DDDEQNAVGLLHWEMRTAEGLIISTAHRHRLPA--GGALAVDRDPFSEAVTKALTDHPNI 118

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +   EV+   +E + I             +T  LT+      +         A     +
Sbjct: 119 AISHEEVSELPSEGHWIF------------ATGPLTSEKLGAAIQTETGADRLAFFDAIA 166

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P     +  M   +   R   G         I    T+ Q+        +F+   +   +
Sbjct: 167 PIVYAESIDMDVAWRQSRYDKGETEEEQKAYINCPMTKPQY-------EAFIDALLAADK 219

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            E     T   T+      I+  A    +   +GP     + +   +  E+    + L  
Sbjct: 220 TEFHEGET--ATYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP-HKPEEKAYAVVQLRR 276

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
           +     +    G  T +    Q    + IPGLE+ +  R G      ++N P  L   + 
Sbjct: 277 DNALGTLYNIVGFQTKMKYGAQASVFKMIPGLEEASFARLGGIHRNTFLNSPTLLDAQMR 336

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            +    +  AGQ+ G  GY E+AA GL+AG  +A +          +  ++ G ++  +T
Sbjct: 337 LRSKPNIRFAGQVTGVEGYVESAAMGLLAGRMAAAEILGRSLPVVPQDTAH-GALVHHIT 395

Query: 417 SKGVLEPYRMFT 428
                + ++   
Sbjct: 396 GGAEAKTFQPMN 407


>gi|315498265|ref|YP_004087069.1| gid protein [Asticcacaulis excentricus CB 48]
 gi|315416277|gb|ADU12918.1| gid protein [Asticcacaulis excentricus CB 48]
          Length = 470

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 97/495 (19%), Positives = 169/495 (34%), Gaps = 52/495 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           V +IGGG AG EAA   A+ G    +   +            +  L   +  R    E +
Sbjct: 9   VHIIGGGLAGSEAAWQLAQAGIPVIIHEMRGIKPTDAHQTDGLAELVCSNSFRSDDWEYN 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +    G    +    K     G     DRE +  A+   + +   + +++ E
Sbjct: 69  AVGLLHAEM--RRGNSLIMACADKHQVPAGGALAVDREGFSQAVTAALAAHPLVTLLREE 126

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V     +            S + C+T  LT+ +    ++ +      +     +P     
Sbjct: 127 VTSLKDKDW----------SNVICATGPLTSESLSEVILELTGEGHLSFFDAIAPIVHAE 176

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF-ADERLIPFSFMTDKITNRQIECGI 242
           +  M   +   R     P       I    T+ Q+ A    +     TD      +    
Sbjct: 177 SIDMSIAWRQSRYDKEGPGGDAAAYINCPMTKDQYEAFVDALLIGPKTDFKEWEHVPYFD 236

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                         I+  A    +   YGP     + D       +    + L  +    
Sbjct: 237 ----------GCLPIEVMAERGRETLRYGPMKPVGLTDPNNPTV-KPYAIVQLRQDNALG 285

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKIS 361
            +    G  T L    Q +  R IPGL+     R G      +I +PK L   L  K++ 
Sbjct: 286 TLYNLVGFQTKLKHGAQAEVFRMIPGLQNAQFARLGGLHRNTFIQSPKVLGADLRLKRLI 345

Query: 362 G---LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           G   L  AGQI G  GY E+AA GL+AG+ +A ++     +      + +G +I  +T  
Sbjct: 346 GERSLRFAGQITGVEGYVESAAMGLLAGLFAAAEAKG-KTLPPPPPTTALGALIGHITGG 404

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRFAKYIQ 469
            +          A+ + S +P N +  L P          G K+      R K+    ++
Sbjct: 405 HL----------ADEKASFQPMNINYGLLPPMEAPKFDEDGKKIPVKDRTRAKKRQMSVR 454

Query: 470 EYNFLRSLLKSLVLT 484
             + + + LK+  + 
Sbjct: 455 ALHDIETWLKTEAVP 469


>gi|256831005|ref|YP_003159733.1| gid protein [Desulfomicrobium baculatum DSM 4028]
 gi|256580181|gb|ACU91317.1| gid protein [Desulfomicrobium baculatum DSM 4028]
          Length = 433

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 166/479 (34%), Gaps = 59/479 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++++Y   ++G G AGCEAA   A+ G    L   K         +  +  L   +  R 
Sbjct: 1   MSKTY--AIVGAGLAGCEAAWQLAQAGCDVVLYEMKPQRFSPAHQSKDLAELVCSNSFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKG-PAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            +   G+     +   +   V++V KG     G     DREL+   M R I     + + 
Sbjct: 59  AELETGIGLLKLEMTELGSLVMDVAKGVEVPAGKALAVDRELFAREMTRRIEEHPRITLQ 118

Query: 121 QGEVAGF--NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           + E+A           + I+             L +      +  I      A     +P
Sbjct: 119 RREIANLAELDGAGHAALIIT---------AGPLASDALSSDLSRIVGQDSLAFYDAIAP 169

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                +  M   F   R      A  D   +     E ++     +      +K+  R+ 
Sbjct: 170 IVLTESVDMSVAFWASRY-----APEDKDYLNCPMNEDEYL--AFVRALVAGEKVAPREF 222

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
           E  +         ++ E             ++GP     + D   R G++    + L  E
Sbjct: 223 EKEMHFEGCLPIEVMAE-------RGEMTLAFGPLKPVGLIDP--RTGKQPYAVVQLRAE 273

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLET 357
                 +   G  T L    Q +   TIPGL     +R G      Y+  P+ L PTLE 
Sbjct: 274 NREKTAMNMVGFQTKLKYGEQKRIFLTIPGLAHAEFLRMGSIHRNTYVLAPEVLTPTLEL 333

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           +   G +LAGQI+G  GY E+AA GL  G+  + +            ++ +G ++  L +
Sbjct: 334 RGRPGTYLAGQISGVEGYLESAATGLWLGLFLSGQRE------LPPVETALGALLAHLRT 387

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLT-------PIGMKLGCIGERRQKRFAKYIQ 469
                P + F          +P N    L        P   +     ER ++ + ++I+
Sbjct: 388 -----PAKHF----------QPSNVHFGLMPALNMKAPKKKRKALYAERAREVWKRWIE 431


>gi|126726442|ref|ZP_01742283.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
 gi|126704305|gb|EBA03397.1| glucose-inhibited division protein A [Rhodobacterales bacterium
           HTCC2150]
          Length = 461

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 147/444 (33%), Gaps = 43/444 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA LG    L   +            +  +   +  R    E +A+
Sbjct: 22  IIGGGMAGSEAAWQAANLGVPVVLHEMRPDVGTFAHQTGNLAEMVCSNSFRSDDSESNAV 81

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +    PA  G     DR+ +   +   I     + V  GE+ 
Sbjct: 82  GLLHWEMRAANGLIMTTADKHSLPA--GGALAVDRDEFAAEVTARIAEHPLITVEYGEIT 139

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I             +T  LT+G     +         A     +P     + 
Sbjct: 140 SLPDDGHWII------------ATGPLTSGNLATAIQGETGTDALAFFDAIAPIVYFDSI 187

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            +   +   R   G         +    T++Q+  E  I      DK   ++ E      
Sbjct: 188 DLDKAWFQSRYDKGDTEEQRKAYLNCPMTKEQY--EAFIDALLAADKAEFKEGETAGYFD 245

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++ E          +   +GP     + ++  +  E++   + L  +     + 
Sbjct: 246 GCLPIEVMAE-------RGRETLRFGPMKPVGLTNE-HKPDEKSYAVVQLRRDNALGTLY 297

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q   +R IPGLE     R G      ++N P  L   +  K    L 
Sbjct: 298 NIVGFQTKMKYGAQTDVLRQIPGLEGAKFARLGGIHRNTFLNSPTLLDDQMRMKSKPNLR 357

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+AG  +A +           T +  G +I  ++        
Sbjct: 358 FAGQITGVEGYVESAAMGLLAGRMAAAEILGGKLDTPPNTTAM-GALITHISGGADA--- 413

Query: 425 RMFTSRAEYRISLRPDNADNRLTP 448
                      + +P N +  L P
Sbjct: 414 ----------KTFQPMNVNFGLFP 427


>gi|237742002|ref|ZP_04572483.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 4_1_13]
 gi|229429650|gb|EEO39862.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 4_1_13]
          Length = 478

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 170/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L   K               + C+ ++G      
Sbjct: 48  EVIVVGAGLAGSEAAYQLAKKGIKVKLYEMKVKKKTPAHSKDYYCELVCSNSLGSDSLEN 107

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   +   + +
Sbjct: 108 ASGLMKEELRILGSLLVDVAD----------RNRVPAGQALA--VDRDGFSEEVTNILKN 155

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 156 TKNIEIIEEEFTEIPDDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 203

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 204 DAAAPIVTFESIDMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 251

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  AI      ++GP     + +   R  + +  
Sbjct: 252 KAERAEL----KNFEKEKLFDACMPIEKIAISGEKTMTFGPLKPKGLTNP--RTEKMDYA 305

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 306 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 365

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   IN A +             S IG 
Sbjct: 366 LDKTLRLKNKDNIYFAGQITGGEGYVTAIATGMYVAINVANRLENKKEFIL-EDISEIGA 424

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 425 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRKL 463

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 464 SERAIEYLKK 473


>gi|94498570|ref|ZP_01305125.1| putative glucose-inhibited division protein (gid) [Sphingomonas sp.
           SKA58]
 gi|94422013|gb|EAT07059.1| putative glucose-inhibited division protein (gid) [Sphingomonas sp.
           SKA58]
          Length = 447

 Score =  232 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 98/491 (19%), Positives = 167/491 (34%), Gaps = 91/491 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG----- 52
           V +IGGG AG EAA   A+ G    L            H+T  +  + C+ +        
Sbjct: 6   VHIIGGGLAGSEAAWQLAQAGVRVRLSEMRGAGDMTPAHQTDGLAELVCSNSFRSDDADK 65

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
              G L +E+  L  L+   A+ A          K PA  G     DR ++  A+ R + 
Sbjct: 66  NAVGLLHQEMRRLGSLIMASAEPA----------KVPA--GSALAVDRHVFSQAVTRALA 113

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-------TFLRGVIHI- 164
               +++++  +     E   I        + +  +++    G         +  VIH  
Sbjct: 114 EHPYIEIVRERIDALPDEGMTIV-ATGPLTAPVLATSIGQAAGMEHLAFFDAIAPVIHRD 172

Query: 165 ---GKLKIPAGR-MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK-QFA 219
                    A R     P       ++    D  + +      LDG+   + + E     
Sbjct: 173 SIDMDQCWMANRWDKIGPGGGEGKDYINCPMDKDQYQAFVQGLLDGEKTEFKEWEANTPY 232

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
            E  +P   M                               A    +   +GP     ++
Sbjct: 233 FEGCMPIEVM-------------------------------ASRGPETLRHGPMKPMGLD 261

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
           +   R G      + L  +  +  +    G  T L    Q +  RTIPGLEK    R G 
Sbjct: 262 NP--RTGRWPYAVVQLRQDNASGTLWNMVGFQTKLKHGAQVELFRTIPGLEKAEFARLGG 319

Query: 340 AIEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                +I +PK L  TL  K    +  AGQ+ G  GY E+AA GL+AG  +A +    + 
Sbjct: 320 LHRNTFIQSPKLLDATLRLKSAPHIRFAGQMTGCEGYVESAAIGLLAGRFAAAELLGRE- 378

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           +     D+ +G ++  +T       Y             +P N +  L P    +    +
Sbjct: 379 MTPPPADTALGALLGHVTGNVATADY-------------QPMNVNFGLFPPLDDV--KKK 423

Query: 459 RRQKRFAKYIQ 469
           +R++ +    +
Sbjct: 424 QRKEAYTARAR 434


>gi|163747154|ref|ZP_02154510.1| tRNA (uracil-5-)-methyltransferase Gid [Oceanibulbus indolifex
           HEL-45]
 gi|161379715|gb|EDQ04128.1| tRNA (uracil-5-)-methyltransferase Gid [Oceanibulbus indolifex
           HEL-45]
          Length = 460

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 161/464 (34%), Gaps = 47/464 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G +  +   +            +G +   +  R    E +A+
Sbjct: 21  IIGGGMAGSEAAWQAANAGVNVVIHEMRPKVETFAHQTGLLGEMVCSNSFRSDDDEQNAV 80

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  + PA  G     DR+ +   +   +L+  N+ V  GE+ 
Sbjct: 81  GLLHWEMRAANGLIMACADKNRLPA--GGALAVDRDPFAQTVTDTLLAHPNITVEYGEIT 138

Query: 126 GFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 K II++  +   ++     +   TG                  +    S  +  
Sbjct: 139 ELPKDGKWIIATGPLTSGAL--AEAIAAETGAEALAFFD------AIAPIVYFDSIDMSQ 190

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G  +    A L+         +KQ  D+  I      DK   R+ E     
Sbjct: 191 AWMQSRYDKGETEEERTAYLNCP------MDKQQYDD-FIDALLAADKTEFREGETAGYF 243

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++ E          +   +GP     + +   +   +    + L  +     +
Sbjct: 244 DGCLPIEVMAE-------RGRETLRHGPMKPVGLTNP-HQPEIKAHAVVQLRRDNKLGTL 295

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q    + IPGLE     R G      +IN P  +   +  +    +
Sbjct: 296 YNIVGFQTKMKYGAQTDVFKRIPGLENARFARLGGIHRNSFINSPTLIDDQMRLRSRPNI 355

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+AA G++AG  +A +      +      + +G ++  +T       
Sbjct: 356 RFAGQITGVEGYVESAAMGMLAGRMAAAEIKGGS-LSTPPDSTAMGALVTHITGGADA-- 412

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                       + +P N +  L P  ++ G    RR ++    
Sbjct: 413 -----------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 443


>gi|58699192|ref|ZP_00374004.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534288|gb|EAL58475.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 231

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 16/226 (7%)

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           MIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +   R       ++ 
Sbjct: 1   MIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLES 60

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
              L   L SL +T + L S  I    DG  +TA + LSYP+     L  I P+    + 
Sbjct: 61  IKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSVTR 120

Query: 531 ----------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
                            + E ++IE+ Y  Y  RQ  + K ++ E    IP DF+YS + 
Sbjct: 121 WNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQVK 180

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
            LS+E+ EKL  +KP  +  A +I+G+TPAA+  +L+Y++    K+
Sbjct: 181 GLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKV 226


>gi|77463182|ref|YP_352686.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           2.4.1]
 gi|123592145|sp|Q3J349|TRMFO_RHOS4 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77387600|gb|ABA78785.1| Glucose-inhibited division protein A [Rhodobacter sphaeroides
           2.4.1]
          Length = 444

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 157/468 (33%), Gaps = 45/468 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA++G    L   +               +   +  R    E +A+
Sbjct: 7   IVGAGMAGSEAAWQAAEMGVPVVLHEMRPKVGTFAHRTGQFAEMVCSNSFRSDDDERNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DR+ +  ++   + +   + V++ EVA
Sbjct: 67  GLLHWEMRAARGLIMEMAAAHRLPA--GGALAVDRDPFAESVTGRLRAHPLISVVEEEVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +  N I             +T  LT+      +  +   +  A     +P       
Sbjct: 125 DLPSSGNWIV------------ATGPLTSSALAESLRALTGAEALAFFDAIAPIVYAETI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M+  +   R   G         I      +Q+        +F+   +   + E     T
Sbjct: 173 DMEVAWRQSRYDKGETEDERTAYINCPMNREQY-------EAFIDALLAAEKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   R  E+    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNS-HRPEEKAHAVVQLRRDNKLGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    D +     ++ +G ++  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRMAAAEILGRD-LPPPPPETAMGALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
                      S +P N +  L P           + R K +    + 
Sbjct: 399 ----------KSFQPMNVNFGLFPPIDARGGRRGRKDRYKAYTDRAKA 436


>gi|167951233|ref|ZP_02538307.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 240

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/196 (50%), Positives = 123/196 (62%)

Query: 17  GCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA 76
           G EAA  AA++GA T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL G+M    D  
Sbjct: 6   GTEAALAAARMGARTLLLTHNIETLGQMSCNPAIGGIGKGHLVKEVDALGGVMAHATDLG 65

Query: 77  GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS 136
           GIQFR+LN +KGPAVR  R QADR  Y+ A++  + +Q NL + Q  V     E+N +  
Sbjct: 66  GIQFRILNSRKGPAVRATRAQADRLRYKAAIRHTLENQPNLQLFQQAVDDLLVEQNRVVG 125

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRL 196
           +  Q     R   VVLT GTFL G IHIG      GR GD P+N+L     +  F   RL
Sbjct: 126 VTTQMGLKFRSRAVVLTVGTFLSGRIHIGLSNHQGGRAGDPPANALAQRLREQPFTVERL 185

Query: 197 KTGTPARLDGKTIIWD 212
           KTGTP R+DG+TI + 
Sbjct: 186 KTGTPPRIDGRTIDYS 201


>gi|320334843|ref|YP_004171554.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
           [Deinococcus maricopensis DSM 21211]
 gi|319756132|gb|ADV67889.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-meth yltransferasetrmFO
           [Deinococcus maricopensis DSM 21211]
          Length = 462

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/456 (21%), Positives = 154/456 (33%), Gaps = 73/456 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA  AA  G    L   +               + C+ ++GG G    
Sbjct: 4   VTVIGAGLAGSEAALAAANAGVPVTLFEMRPVKMTPAHRSGKFAELVCSNSLGGEGETNA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ A+   +   ADA+ +              G     +RE +   + R + + 
Sbjct: 64  KGLLQAEMRAVGSTVIAAADASRL------------PAGGALAVEREGFSDHVTRAVRNH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + V   EV            + V+            LT+      +      +  A  
Sbjct: 112 PLITVRDEEVTALP------EGVTVLATG--------PLTSEALAEDIARATGTERLAFY 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   F  GR             I     ++Q+A              
Sbjct: 158 DAAAPVIAFDSINMDVAFRAGRYDQP------ADYINCPMDKEQYA--AFYAALEQARSH 209

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           T    E             I       A    D   +GP     + D   R G      +
Sbjct: 210 TPHDWEKLEFFEGCMPIEEI-------ARRGPDTPRFGPMKPRGLTDP--RTGRWPYAVV 260

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E     +    G  T L    Q   ++ IPGLE   I+R G      Y+N P+ L 
Sbjct: 261 QLRQEDAEGRMWSLVGFQTGLKWGDQKAVVQLIPGLENAEIVRYGVMHRNTYLNAPEVLT 320

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            T++ +      +AG + GT GY E+AA G +AG+N+AR +  L+ +C  + +S +G + 
Sbjct: 321 ETMQLRADPEKLVAGVLAGTEGYLESAATGWLAGLNAARLAQGLEPVCPPQ-ESMLGGLT 379

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             L +                  + +P N +  L P
Sbjct: 380 RYLATANP--------------KNYQPMNTNWALVP 401


>gi|307297543|ref|ZP_07577349.1| gid protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916803|gb|EFN47185.1| gid protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 431

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 172/479 (35%), Gaps = 54/479 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--IDAL 65
           + +IGGG AG EAA   A  G    L   + +    +  +     L   +  +   +D  
Sbjct: 3   INIIGGGLAGSEAALSLADFGQEVNLFEMRPNVKTDVHQSGDFAELVCSNSFKSESLDNA 62

Query: 66  DGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            GL+       G +   +    + PA  G     DR+ +   +  ++ +   ++V + EV
Sbjct: 63  SGLLKEEGLRLGSRLLEIAYHNRVPA--GKALAVDRKAFSEEVSMKLETHPLINVRREEV 120

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              + +   ++ +       +         G    G +              +P  +  +
Sbjct: 121 CSLDFDGA-VNVVCT---GPLTSGCFEAFLGELFGGALFFFDAV--------APIVAADS 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             ++  F   R         +G  +    + +++         F  + +    +E     
Sbjct: 169 VDLERAFIADRYSD------NGDYVNCSLSREEY-------ELFWNELVHAEVLEVENF- 214

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            +        +  +  A    D   +GP     + D I   G+     + L  E L+  +
Sbjct: 215 -SDRFLFERCQPFEEIARSGIDALRFGPMKPVGLIDPI--TGKEPYAVVQLRKENLSGSL 271

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
           +   G  T L    Q + +  IP L  V+IIR G      +++ P+ L P L+++   GL
Sbjct: 272 LGIVGFQTRLKWREQKRILSLIPALRNVDIIRYGVMHRNTFLDSPRLLNPDLQSRNHKGL 331

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI+G  GY EA   G +A IN+ R       +      + IG +I+ +T       
Sbjct: 332 FFAGQISGLEGYVEAIVSGRLAAINADRYVRGKQTVIPPV-GTMIGGLINHIT------- 383

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                     R  L+P  A+  L P       +  RR+K   K +     ++  L+ ++
Sbjct: 384 -------VSGRSPLKPVYANFGLLPEIR----MKNRREKNRKKVVVAQEKIQRFLEVII 431


>gi|256845342|ref|ZP_05550800.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256718901|gb|EEU32456.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 434

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/490 (19%), Positives = 171/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKKGIKVKLYEMKAKKKTPAHSKDYYCELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   +   + +
Sbjct: 64  ASGLMKEELRILGSLLIDVAD----------RNRVPAGQALA--VDRDGFSEEVTNILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 TKNIEIIEEEFTEIPDDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     +G+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESVDMNKAYFQSRYGKG-----NGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  AI      ++GP     + +   R  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAISGEKTMTFGPLKPKGLTNP--RTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   IN A +             S IG 
Sbjct: 322 LDKTLRLKNKDNIYFAGQITGGEGYVTAIATGMYVAINVANRLENKKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 420 SERAIEYLKN 429


>gi|110679839|ref|YP_682846.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter denitrificans
           OCh 114]
 gi|122972724|sp|Q166D3|TRMFO_ROSDO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|109455955|gb|ABG32160.1| glucose-inhibited division protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 450

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 164/494 (33%), Gaps = 70/494 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA++G    L   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+  R+ +  + PA  G     DR+L+  ++   + +   + +  GE++
Sbjct: 67  GLLHWEMRAAGGLIMRMADKHRLPA--GGALAVDRDLFAQSVTDTLTAHPRITIEYGEIS 124

Query: 126 GFNTEKNII--SSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   I  +  +   + +  I   T       F      +    I   R        
Sbjct: 125 ELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFFDAIAPIVYFDSIDMSRAWMQSRYD 184

Query: 182 LFNS------FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              +      ++    D  + +    A L      + + E     +  +P   M ++   
Sbjct: 185 KGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAER--- 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                                         +   +GP     + +      + +    + 
Sbjct: 242 ----------------------------GRETLRFGPMKPVGLTNP--HQPDVKPYAVVQ 271

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T +    Q    +TIPGLE  +  R G      ++N P  L  
Sbjct: 272 LRRDNKLGTLYNIVGFQTKMKYGAQAAVFKTIPGLENASFARLGGIHRNTFLNAPTLLDE 331

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            +  +    +  AGQI G  GY E+AA GL+AG  +A +   +  +      +  G +I 
Sbjct: 332 QMRLRSRPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGIS-LSAPADTTATGALIT 390

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI---QE 470
            ++                   + +P N +  L P  ++ G  G RR ++        + 
Sbjct: 391 HISGGAEA-------------KTFQPMNVNFGLFP-PVE-GLKGGRRGRKDRYKAYTDRA 435

Query: 471 YNFLRSLLKSLVLT 484
               ++ L+++   
Sbjct: 436 KRDWQNWLEAVKEP 449


>gi|149203848|ref|ZP_01880817.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
 gi|149142965|gb|EDM31007.1| glucose-inhibited division protein A [Roseovarius sp. TM1035]
          Length = 458

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 139/435 (31%), Gaps = 46/435 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA +G    +   + S          +  +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANMGVHVVIHEMRPSVKTFAHRTGDLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  + PA  G     DR+ +  ++   +L   N+ V   E+ 
Sbjct: 67  GLLHWEMRAANGLIMAMAHENRLPA--GGALAVDRDRFAQSVTARLLDHPNITVQHDEIT 124

Query: 126 GFNTEKNII--SSIVMQ--DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                 + I  +  +        I   T       F      +    I   R        
Sbjct: 125 QLPDSGHWIIATGPLTSEGLGQAIAAETGTEALAFFDAIAPIVYHDSIDMSRAWMQSRYD 184

Query: 182 LFNS------FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              +      ++    D  + +    A L      + + E + +      F         
Sbjct: 185 KGETEAERTAYLNCPMDRDQYEAFIDALLAADKTEFHEGEAESSPNPTPYFD-------- 236

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                                I+  A    +   +GP     + +      + +    + 
Sbjct: 237 -----------------GCLPIEVMAERGRETLRHGPMKPVGLTNP--HAPDVKPHAVVQ 277

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T +    Q    + IPGLE     R G      ++N P  L  
Sbjct: 278 LRRDNALGTLYNIVGFQTKMKYGAQATVFKMIPGLENAQFARLGGIHRNTFLNSPTLLDA 337

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            +  +    +  +GQI G  GY E+AA GL+AG  +A +          + DS +G +I 
Sbjct: 338 QMRLRSRPHIRFSGQITGVEGYVESAAMGLLAGRLAAAEILGQSLPPVPQ-DSAMGALIH 396

Query: 414 DLTSKGVLEPYRMFT 428
            +T     + ++   
Sbjct: 397 HITGGAEAKTFQPMN 411


>gi|221639039|ref|YP_002525301.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           KD131]
 gi|259547958|sp|B9KRK8|TRMFO_RHOSK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|221159820|gb|ACM00800.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Rhodobacter sphaeroides KD131]
          Length = 444

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 157/468 (33%), Gaps = 45/468 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA++G    L   +               +   +  R    E +A+
Sbjct: 7   IVGAGMAGSEAAWQAAEMGVPVVLHEMRPKVGTFAHRTGQFAEMVCSNSFRSDDDERNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DR+ +  ++   + +   + V++ EVA
Sbjct: 67  GLLHWEMRAARGLIMEMAAAHRLPA--GGALAVDRDPFAESVTARLRAHPLISVVEEEVA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              +  N I             +T  LT+      +  +   +  A     +P       
Sbjct: 125 ELPSSGNWIV------------ATGPLTSSALAESLRALTGAEALAFFDAIAPIVYAETI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M+  +   R   G         I      +Q+        +F+   +   + E     T
Sbjct: 173 DMEVAWRQSRYDKGETEDERTAYINCPMNREQY-------EAFIDALLAAEKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   R  E+    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNA-HRPEEKAYAVVQLRRDNKLGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQTAVFKMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    D +     ++ +G ++  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRMAAAEILGRD-LPPPPPETAMGALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
                      S +P N +  L P           + R K +    + 
Sbjct: 399 ----------KSFQPMNVNFGLFPPIDARGGRRGRKDRYKAYTDRAKA 436


>gi|86159119|ref|YP_465904.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123736735|sp|Q2ILE0|TRMFO_ANADE RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|85775630|gb|ABC82467.1| gid protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 450

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 150/480 (31%), Gaps = 65/480 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIGGG AG EAA   A+ G +  L+  K          P +  L   + +R     +A
Sbjct: 6   VTVIGGGLAGSEAAWQLARAGVAVELVEMKPERRSPAHVLPGLAELVCSNSLRSDNPQNA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE +  A+   +     + ++  EV
Sbjct: 66  VGLLHEELRRLGSLVLGCADATRVPA--GDALAVDRERFSEAVTARLSGHPGVRIVHREV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP----------AGRM 174
                   +              + +   TG    G +H      P              
Sbjct: 124 EDLPPPPALAVIATGPLTGDALAARLAEATG----GRLHFYDAIAPIVAAESIDRSIAYA 179

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
                    + ++    D  +      A L G+ +     E+    E  +P   M ++  
Sbjct: 180 RSRYGKGSGDDYLNLPLDEAQYHAFVDALLQGEKVPAHGFEEPRYFEGCLPIEVMAER-- 237

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                                          ++ ++GP     +ED   R G      + 
Sbjct: 238 -----------------------------GTEVLAHGPLKPVGLEDP--RTGRWPHAVVQ 266

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELF 352
           L  E +        G  T L    Q +  R  +PGL     +R G      +++ P+ L 
Sbjct: 267 LRREDVEGTAWNLVGFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLA 326

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P L  +    LFLAGQI G  GY E+AA GL+A   +                + +G + 
Sbjct: 327 PDLSVRAAPHLFLAGQITGVEGYVESAACGLMAA-RAVLDRLAERAFRPPPAATALGALH 385

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             LT +     Y    S   + +            P+  +      R++    +  +E  
Sbjct: 386 RHLTGEAHPPGYDYQPSNVVFAL----------FPPLTGRHRGKAGRKEAHVERARKELA 435


>gi|159044024|ref|YP_001532818.1| tRNA (uracil-5-)-methyltransferase Gid [Dinoroseobacter shibae DFL
           12]
 gi|189040806|sp|A8LK18|TRMFO_DINSH RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157911784|gb|ABV93217.1| gid protein [Dinoroseobacter shibae DFL 12]
          Length = 451

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/456 (20%), Positives = 156/456 (34%), Gaps = 67/456 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG-----LGK 55
           ++GGG AG EAA  AA++G S  +           HKT  +  M C+ +           
Sbjct: 7   IVGGGMAGSEAAWQAAQMGVSVVIHEMRPKVGTFAHKTGHLAEMVCSNSFRSDDDEQNAV 66

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E+ A  GL+  +ADA  +              G     DRE +  ++   +    
Sbjct: 67  GLLHWEMRAAGGLIMEMADAHAL------------PAGGALAVDREPFAESVTARLHEHP 114

Query: 116 NLDVIQGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           N+ V   E+     E K II++  +   ++     +   TG                  +
Sbjct: 115 NIRVEGTEITSLPAEGKWIIATGPLTSGAL--AEAIAAETGQESLAFFD------AIAPI 166

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
               S  +  ++M+  +D G  +    A L            Q+  E  I      +K  
Sbjct: 167 LYFDSIDMTKAWMQSRYDKGETEEERTAYL-----NCPMDRDQY--EAFIDALLAAEKTE 219

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-QI 293
            +  E            ++ E          +   +GP     + +      +   H  +
Sbjct: 220 FKPGETAGYFDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNP--HQPDVKAHAVV 270

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T +    Q + +R IPGLE+    R G      +IN P  L 
Sbjct: 271 QLRRDNALGTLYNIVGFQTKMKYGAQKEVLRMIPGLEEARFARLGGIHRNTFINAPTLLD 330

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             +       L  AGQI G  GY E+AA GL+AG  +A +      +     ++ +G +I
Sbjct: 331 DQMRLHSRPNLRFAGQITGVEGYVESAAMGLLAGRMAAAEILGT-PLASPPQETAMGALI 389

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             +T                   + +P N +  L P
Sbjct: 390 HHITGGAEA-------------KTFQPMNVNFGLFP 412


>gi|209885371|ref|YP_002289228.1| tRNA:M(5)U-54 methyltransferase [Oligotropha carboxidovorans OM5]
 gi|209873567|gb|ACI93363.1| tRNA:M(5)U-54 methyltransferase [Oligotropha carboxidovorans OM5]
          Length = 477

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/447 (20%), Positives = 148/447 (33%), Gaps = 36/447 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           + VIGGG AG EAA   A+LG    L   +            +  L   +  R  DA   
Sbjct: 11  IHVIGGGLAGSEAAWQIARLGHPVVLHEMRPVRTTEAHRTDGLAELVCSNSFRSDDAANN 70

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +     +  + PA  G     DRE +  A+   +     +++ + E
Sbjct: 71  AVGLLHAELRRLNSLIMASADAHQVPA--GGALAVDREGFSAAVSAALAQHPLIEIHREE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG          +              LT+      +         A     +P     
Sbjct: 129 IAGLPPADWSNVVVAT----------GPLTSPALADAIRTRSGEDSLAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    + +Q+  E  I      +K   +  E    
Sbjct: 179 SIDMSKAWFQSRYDKVGPGGNGADYINCPLSREQY--EAFIAALIAGEKTDFKDWE---- 232

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                T        I+  A    +   +GP     + +       +    + L  +    
Sbjct: 233 ---SNTPYFDGCLPIEVMAERGPETLRHGPMKPVGLTNAHNPTV-KPYAIVQLRQDNKLG 288

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q Q +R IPGLE     R G      ++N PK L   L  +   
Sbjct: 289 TLYNIVGFQTKLKYGAQTQVLRMIPGLEHAEFARLGGLHRNTFLNSPKLLDAQLRLRAEP 348

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L  AGQ+ G  GY E+A  GL+AG+ +A        I      + +G +++ +T   + 
Sbjct: 349 RLRFAGQMTGCEGYVESAGIGLLAGLFAA-YDALARTIAPPPPTTALGALLNHITGGHIE 407

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTP 448
                 T+ A  R S +P N +  L P
Sbjct: 408 ------TTDAGPR-SFQPMNINFGLFP 427


>gi|295100360|emb|CBK97905.1| tRNA:m(5)U-54 methyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 458

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/489 (19%), Positives = 167/489 (34%), Gaps = 49/489 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EI 62
           +Y V V+G G AGCEAA   A  G    L   K +       +     L   + ++   +
Sbjct: 3   NYKVTVLGAGLAGCEAALWLAGKGVQVELYEQKPTHFSPAHKSEGFAELICSNSLKAERL 62

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADRELYRLAMQREILSQENLDVIQ 121
           D+  GL+       G Q   LN  +   V        DR+ +   + R + ++ N+ V +
Sbjct: 63  DSASGLLKEEMRRMGSQL--LNAAEAARVAAGGALAVDRDTFSAEVTRMVEAEPNITVHR 120

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
             V   +    I +++  + D ++     +   TG      +H             +P  
Sbjct: 121 ERVEHIDESTPILVATGPLTDGAL--ADEIGRLTG---DERLHFYDAV--------APIV 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE--------RLIPFSFMTDK 232
           +  +   +  F   R   G    L+     ++K E +             L  F    ++
Sbjct: 168 TAESLDYEKVFAASRYDRGEADYLNCP---FNKAEYEAFRAALASAERAPLHEFDAGAEQ 224

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
                 +    + +  T       I+  A    D   +GP     + D   R G R    
Sbjct: 225 GAQPDPDAHGKKADTVTVYEGCMPIEIMAARGADTMRFGPLRPVGLIDP--RTGHRPWAN 282

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T L    Q +    IPGL     +R G      +++ P+ L
Sbjct: 283 VQLRAENKERTLYNIVGFQTNLKWGEQKRVFSMIPGLGNAEFVRYGVMHRNTFLDAPRVL 342

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
              L  K+   +F AGQI G  GY E+ A GL+A  N   +    + +     D+  G +
Sbjct: 343 SAGLCLKEHPNVFFAGQITGFEGYMESTACGLLAARNIYARLEGKE-LPAPPIDTMCGAL 401

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           I  LT++                   +P  A+  + P   +     ++R +  A   +  
Sbjct: 402 IQYLTTE---------------NKHFQPMGANMGILPPLPEDQRPRDKRLRYMAVAERAV 446

Query: 472 NFLRSLLKS 480
              +  L  
Sbjct: 447 ASFQQWLDE 455


>gi|126737646|ref|ZP_01753376.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
 gi|126721039|gb|EBA17743.1| glucose-inhibited division protein A [Roseobacter sp. SK209-2-6]
          Length = 447

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 168/485 (34%), Gaps = 56/485 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    +   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAANMGVEVVIHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  + PA  G     DRE +   +  ++ +  N+ V   E+ 
Sbjct: 67  GLLHWEMRAAGGLIMTTADEHRLPA--GGALAVDREPFAETVTAKLKAHPNVTVSYEEIT 124

Query: 126 GFNTEKNII--SSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              ++ + I  +  +   +    I+  T       F                +  + S  
Sbjct: 125 ELPSDGHWIFATGPLTSPELGKAIQAETGAEALAFF-----------DAIAPIVYAESID 173

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  ++M+  +D G  +    A L+               ++    +F+   +   + E  
Sbjct: 174 MSQAWMQSRYDKGETEEERTAYLNCPM------------DKPQYEAFIDALLAADKTEFH 221

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
              T    +      I+  A    +   +GP     + +   +  E+    + L  +   
Sbjct: 222 EGET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP-HKPEEKAWAVVQLRRDNAL 278

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T +    Q Q  + IPGL+  +  R G      ++N P  L   +  K  
Sbjct: 279 GTLFNIVGFQTKMKYGAQAQVFKMIPGLKNASFARLGGIHRNTFLNSPTLLDSQMRLKSK 338

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +  AGQI G  GY E+AA GL+AG  +A +    +     + DS +G +I  +T    
Sbjct: 339 PHIRFAGQITGVEGYVESAAMGLLAGRLAAAEILDQELPEVPQ-DSAMGALIHHITGGAE 397

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI---QEYNFLRSL 477
                          + +P N +  L       G  G RR ++        +     +  
Sbjct: 398 A-------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYKAYTDRAKEHWQEW 442

Query: 478 LKSLV 482
           LK+  
Sbjct: 443 LKNFS 447


>gi|260494671|ref|ZP_05814801.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197833|gb|EEW95350.1| tRNA:m(5)U-54 methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 434

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 170/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH 57
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G     +
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYCELVCSNSLGSDSLEN 63

Query: 58  ----LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
               +  E+  L  L+  VAD            K     G     DR+ +   + R + +
Sbjct: 64  ASRLMKEELRILGSLLIDVAD------------KNRVPAGQALAVDRDGFSEEVTRILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 MENIEIIEEEFIEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESIDMNRAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--RTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   IN A +             S IG 
Sbjct: 322 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYVAINVANRLENKKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRNLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 420 SERAIEYLKN 429


>gi|220909352|ref|YP_002484663.1| tRNA (uracil-5-)-methyltransferase Gid [Cyanothece sp. PCC 7425]
 gi|219865963|gb|ACL46302.1| gid protein [Cyanothece sp. PCC 7425]
          Length = 463

 Score =  230 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 170/508 (33%), Gaps = 78/508 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG 52
           ++    V VIGGG AG EAA   A  G                H T  +  + C+ + G 
Sbjct: 1   MSSHQPVWVIGGGLAGTEAAWQIASAGVPVIFSEMRPCRFSPAHHTEHLAELVCSNSFGA 60

Query: 53  LGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           +      G L  E+     ++ + ADA  +              G     DR ++   + 
Sbjct: 61  MASDRAAGLLHAELRQSGSIIIQTADAHAV------------PAGGALAVDRGVFSQELT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++     ++  + EV     +      +V+            LT+      +       
Sbjct: 109 EKLARHPLIEFRREEVQQIPPDGV----VVLTTG--------PLTSPALAADLQRFTGQA 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
             +     SP     +   +  F   R   G  A L         T++Q+          
Sbjct: 157 YLSFFDAASPIVVGDSINREIAFLASRYDRGEAAYL-----NCPMTKEQYL--HFWQALC 209

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE- 287
             ++   +  E    R   +     +  I+  A    D   YGP     + D   R G+ 
Sbjct: 210 SAEQTELKDFE----RETAKFFEACL-PIEEMARRGEDTLRYGPLKPVGLFDA--RLGDF 262

Query: 288 --------RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
                   R    + L  E     +    G  T L    Q +  + IPGLE    +R G 
Sbjct: 263 RDRANQHLRPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFQMIPGLEAAEFVRLGV 322

Query: 340 AIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
                ++N P+ LFPTL+ K+   L  AGQ+ GT GY  AAA G +AG N+AR    L  
Sbjct: 323 MHRNTFLNAPELLFPTLQFKQRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLVLGLAP 382

Query: 399 ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE 458
           +    T + +G +   ++              +  R   +P   +  + P   +     +
Sbjct: 383 LVLPET-TMMGALFSFIS--------------SADRKHFQPMPPNFGIFPPLTERIRSKQ 427

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            R   +    +  + L    ++  L S+
Sbjct: 428 ERYAAYRD--RALSTLAEWQRNHKLHSQ 453


>gi|237736956|ref|ZP_04567437.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420818|gb|EEO35865.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium mortiferum
           ATCC 9817]
          Length = 437

 Score =  230 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 168/486 (34%), Gaps = 64/486 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
           +  + +V+V+G G AG EAA   AK G    L           HK+     + C+ ++G 
Sbjct: 1   MTYNKEVVVVGAGLAGSEAAYQLAKRGIKVKLYEMKKIKKTEAHKSDDFAELVCSNSLGA 60

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G +  E+  L  L+ + AD            + PA +      DR+ +   + 
Sbjct: 61  DNLANASGLMKEELRRLGSLVIKSADN----------NRVPAGQALA--VDRDGFSQEIT 108

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             +   E            N E      I + ++ ++  ++  LT+    + +  +    
Sbjct: 109 STLRKME------------NIEIIEEELIEIPEDKIVLIASGPLTSEALSKKIGELTHSD 156

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                   +P  +L +  M   +   R   G     +G+ I     ++Q+       ++F
Sbjct: 157 YLYFYDAAAPIVTLESINMDIAYRQSRYGKG-----EGEYINCPMDKEQY-------YAF 204

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
               IT  +          E        ++  A+       +GP     + +   +  + 
Sbjct: 205 YNALITAERAPLKAF--EEEKIFDACMPVERIAMTGEKTLVFGPLKPKGLINP--KTDKM 260

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
           +   + L  +     +    G  T L    Q +    IPGLE    IR G      +IN 
Sbjct: 261 DYAVVQLRQDDKEGKLYNIVGFQTNLKWGEQKRVFSMIPGLENAEFIRYGVMHRNTFINS 320

Query: 349 KE-LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
            + L  TL+ K    ++ AGQI G+ GY  + A G++A IN A +  +          S 
Sbjct: 321 TQLLDETLKLKTKDNIYFAGQITGSEGYVSSVATGMMAAINIAHRLEEKSSFILDD-RSA 379

Query: 408 IGVMIDDLT-SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           IG M+  +T  K   +P  M  +    R        D R+     +   I     +    
Sbjct: 380 IGAMVKYITEEKKNFQP--MGPNFGIIRSL------DERIRDKKERYNKISNIALEYLDT 431

Query: 467 YIQEYN 472
            + E  
Sbjct: 432 KLDEIK 437


>gi|195952813|ref|YP_002121103.1| tRNA (uracil-5-)-methyltransferase Gid [Hydrogenobaculum sp.
           Y04AAS1]
 gi|254789174|sp|B4U7L4|TRMFO_HYDS0 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|195932425|gb|ACG57125.1| gid protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 457

 Score =  230 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/481 (20%), Positives = 162/481 (33%), Gaps = 98/481 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------------------------------- 34
           V VIG G AG EAA   A  G    +                                  
Sbjct: 3   VNVIGAGLAGSEAAYFLANKGIKVRMFEMRPITSHFTSRQDEKTGTHDVRNATQTRPITT 62

Query: 35  --THKTSTIGSMSCNPAIGG----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              HKT   G + C+  +G      G G L +E++ L+ L+ + A  + ++         
Sbjct: 63  TEAHKTDKFGELVCSNTLGSFEITTGAGLLKKEMELLNSLVIKAAKHSYVK--------- 113

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS 148
               G     DR  +   + + ILS  N++V++ EV   N  +  I             +
Sbjct: 114 ---AGSALAVDRNEFSDFITKTILSHPNIEVVREEVESLNENELNIV------------A 158

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
           T  LT+  F + + ++            +P     +      F   R   G         
Sbjct: 159 TGPLTSEKFSKYLKNLITDDYLYFYDAIAPIVEASSVDFSKGFWGSRYDKGD------DY 212

Query: 209 IIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
                T++++  +         +K+  +  E  +          I       A    +  
Sbjct: 213 FNCTMTKEEY--DIFYNELLKAEKVPTKDFERVVHFEGCLPIEEI-------ASRGYETL 263

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
            +GP     ++  I    +     + L  E    + +   G  T L  + Q +  R IP 
Sbjct: 264 VFGPMSPKGLKHHI---SKDVYAIVQLRKETKEGEALSLVGFQTKLTYKEQVRVFRLIPC 320

Query: 329 LEKVNIIRPGYAIEYDYINP-KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           L      R G      ++   K L PTLE +K   +  AGQI G  GY  +AA G++AGI
Sbjct: 321 LRNAVFSRLGSMHRNTFLQSNKLLKPTLELRKNPNILFAGQITGVEGYSASAATGIIAGI 380

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
           N+  K    +     +T + +G ++D ++SK                  L+P N    L 
Sbjct: 381 NAWLKLEGKEPTTPPKT-TMLGALLDYISSKE---------------GELQPMNPVFGLL 424

Query: 448 P 448
           P
Sbjct: 425 P 425


>gi|192291542|ref|YP_001992147.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           TIE-1]
 gi|192285291|gb|ACF01672.1| gid protein [Rhodopseudomonas palustris TIE-1]
          Length = 478

 Score =  230 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 152/446 (34%), Gaps = 34/446 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V VIG G AG EAA   A+ G    L   +            +  L   +  R  DA   
Sbjct: 12  VHVIGAGLAGSEAAWQIARAGVRVVLHEMRPIRTTEAHKTDGLAELVCSNSFRSDDAANN 71

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +  +  +  + PA  G     DR+ +  A+ + +     +++ + E
Sbjct: 72  AVGLLHAEMRRLGSLIMQAADANQVPA--GGALAVDRDGFSAAVTKALAEHPLIEICREE 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G   ++   +++V+            LT+      +  +      A     +P     
Sbjct: 130 IDGLPPQEW--TNVVIATG--------PLTSAPLADAIRGLTDESALAFFDAIAPIVHRD 179

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       +    T +Q+  +  +      +K+  +  E    
Sbjct: 180 SIDMSVAWFQSRYDKVGPGGTGADYLNCPMTREQY--DAFVDALIEGEKVDFKDWEKDTP 237

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
             +          I+  A    +   +GP     + +       +    + L  +     
Sbjct: 238 YFD------GCLPIEVMAERGRETLRHGPMKPVGLTNPHNPTV-KPYAIVQLRQDNKLGT 290

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T L    Q +  RTIPGLE     R G      ++N PK L  +L  +    
Sbjct: 291 LYNMVGFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLDESLRLRASPR 350

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+A+ GL AG+ +A        +      + +G ++  +T   +  
Sbjct: 351 LRFAGQMTGCEGYVESASIGLFAGLAAAADLVGQS-LAPPPPTTALGALLGHITGGHIE- 408

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                 +      S +P N +  L P
Sbjct: 409 ------TIDAGPRSFQPMNINFGLFP 428


>gi|89054989|ref|YP_510440.1| tRNA (uracil-5-)-methyltransferase Gid [Jannaschia sp. CCS1]
 gi|122999436|sp|Q28PE7|TRMFO_JANSC RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|88864538|gb|ABD55415.1| gid protein [Jannaschia sp. CCS1]
          Length = 458

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 165/491 (33%), Gaps = 49/491 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           + ++  + +IGGG AG EAA  AA LG +  LI  +            +  +   +  R 
Sbjct: 1   MTQNTQLTIIGGGMAGSEAAWQAANLGVNVRLIEMRPKVETFAHRTGNLAEMVCSNSFRS 60

Query: 61  ---EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
              E +A+  L   +  A  +     +  K PA  G     DR+ +  A+  ++ +  N+
Sbjct: 61  DDSEQNAVGLLHWEMRAANSVIMHTADSHKLPA--GGALAVDRDPFAEAVTAKLHAHPNI 118

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           ++  GEV         I             +T  LT       +         A     +
Sbjct: 119 EITYGEVTDLPAAGPTII------------ATGPLTGSALADAIAREAGQDALAFFDAIA 166

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P     +  M   +   R   G         I    T  Q+  E  I      DK   + 
Sbjct: 167 PIVYADSIDMDIAWRQSRYDKGDTLEEQQAYINCPLTRDQY--EAFIDALLSADKTQFKD 224

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLE 296
            E            ++ E          +   +GP     + +      + +    + L 
Sbjct: 225 GETAGYFDGCLPIEVMAE-------RGRETLRFGPMKPVGLTNPHD--PQTKAYAVVQLR 275

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T +    Q Q    IPGL++ +  R G      +IN P  L   +
Sbjct: 276 RDNALGTLYNIVGFQTKMTYGAQKQVFAMIPGLQEASFARLGGIHRNTFINSPTLLDDQM 335

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             +    +  AGQI G  GY E+A+ GL+AG  +A +           T +  G ++  +
Sbjct: 336 RLRSKPHIRFAGQITGVEGYVESASMGLLAGRMAAAEILGETLPDLPDTTAM-GALVTHI 394

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T                   + +P N +  L P  ++ G  G RR  R  +Y    +  +
Sbjct: 395 TGGADA-------------KTFQPMNVNFGLFP-PVE-GLKGGRR-GRKDRYKAYTDRAK 438

Query: 476 SLLKSLVLTSK 486
           +   +  LT +
Sbjct: 439 AAWTN-WLTPQ 448


>gi|149915273|ref|ZP_01903801.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter sp. AzwK-3b]
 gi|149810994|gb|EDM70833.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter sp. AzwK-3b]
          Length = 452

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 148/427 (34%), Gaps = 36/427 (8%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  A  LG    +   +            +  +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAVHLGVPVVIHEMRPRVETFAHRTGDLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+  +  +  + PA  G     DR+L+   + + + +   + +   E+ 
Sbjct: 67  GLLHWEMRAADGLIMQTADRHRLPA--GGALAVDRDLFARDVTQTLRNHPLITIQHDEIT 124

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + + I  +  +           +   TG                  +  + S  + 
Sbjct: 125 ELPADGHWIIATGPLTSQGL---GQAIAHETGADALAFFD------AIAPIVYADSIDMS 175

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L+               +R    +F+   +   + E    
Sbjct: 176 KAWMQSRYDKGETEEERTAYLNCPM------------DRATYDAFIDALLAADKTEFHEG 223

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNT 302
            T    +      I+  A    +   +GP     + +      + +    + L  +    
Sbjct: 224 ET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDVKPHAVVQLRRDNALG 279

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q +  R IPGLE  +  R G      ++N P  L   +  +   
Sbjct: 280 TLFNIVGFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSRP 339

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+AA GL+AG  +A +      +     DS +G +I  +T     
Sbjct: 340 HIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGR-PLPSPPQDSAMGALIHHITGGAEA 398

Query: 422 EPYRMFT 428
           + ++   
Sbjct: 399 KTFQPMN 405


>gi|162448004|ref|YP_001621136.1| glucose inhibited division protein [Acholeplasma laidlawii PG-8A]
 gi|205830304|sp|A9NHD0|TRMFO_ACHLI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161986111|gb|ABX81760.1| glucose inhibited division protein [Acholeplasma laidlawii PG-8A]
          Length = 427

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 158/476 (33%), Gaps = 57/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           + +IG G AG EAA   A  G    L   +               L   +  R    ++A
Sbjct: 2   IKIIGAGLAGSEAAYYLANKGYKVKLYEMRPKKNTPAHVTKNFAELVCSNSFRSNDPLNA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     N+ K PA        DR L+   +  +I S EN++VI  EV
Sbjct: 62  VGLLKVEMTHFNSLILEAANIHKVPAGSSLA--VDRNLFSEYVTEKIKSHENIEVIHEEV 119

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
              +  +  I             +   L +    + +     L+        +P     +
Sbjct: 120 TSLDPNEYTII------------AAGPLASDLLSKQIQDHLHLESLNFFDAVAPIIDAKS 167

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R      A ++          KQ          F    +T   +      
Sbjct: 168 INMDIAYLKSRYDKDEAAYINCP------MNKQE------YLEFYKALMTAESVAPKDFE 215

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            N+    + +E++        D   +GP     +       GE+    + L  + +N  +
Sbjct: 216 NNVFEGCMPVEDMGK---RGIDTLRFGPLKPVGLTKPN---GEKPYAVVQLRQDDVNKTM 269

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q + I+ IPGLE   I+R G   +  Y+  PK L    + + I   
Sbjct: 270 YNMVGFQTHMKWGDQKRVIQMIPGLENAEILRYGVIHKNTYLESPKHLNNAFQVRDIPKW 329

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI+G  GY E+AA GL   IN      K +       D+ +G M   +        
Sbjct: 330 FFAGQISGVEGYIESAASGLNVAINLHNLLTKGEIRPLPV-DTMMGAMARYI-------- 380

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                  + Y     P NA+  L         + ++       Y +  + L+  ++
Sbjct: 381 -------SNYHQYFVPMNANFGLFDQIEAHKTVRKQMY-----YDRSMHALKEYIE 424


>gi|39935894|ref|NP_948170.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodopseudomonas palustris
           CGA009]
 gi|50400230|sp|Q6N5Z1|TRMFO_RHOPA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|39649748|emb|CAE28269.1| putative glucose-inhibited division protein (gid) [Rhodopseudomonas
           palustris CGA009]
          Length = 478

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 155/456 (33%), Gaps = 54/456 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI-----GGL 53
           V VIG G AG EAA   A+ G    L           HKT  +  + C+ +         
Sbjct: 12  VHVIGAGLAGSEAAWQIARAGVRVVLHEMRPVRTTEAHKTDGLAELVCSNSFRSDDAANN 71

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L  E+  L  L+ + ADA                 G     DR+ +  A+ + +  
Sbjct: 72  AVGLLHAEMRRLGSLIMQAADA------------NQVPAGGALAVDRDGFSAAVTKALAE 119

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              +++ + E+ G   ++   +++V+            LT+      +  +      A  
Sbjct: 120 HPLIEICREEIDGLPPQEW--TNVVIATG--------PLTSAPLADAIRGLTDESALAFF 169

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P     +  M   +   R     P       +    T +Q+  +  +      +K+
Sbjct: 170 DAIAPIVHRDSIDMSVAWFQSRYDKVGPGGTGADYLNCPMTREQY--DAFVDALIEGEKV 227

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E      +          I+  A    +   +GP     + +       +    +
Sbjct: 228 DFKDWEKDTPYFD------GCLPIEVMAERGRETLRHGPMKPVGLTNPHNPTV-KPYAIV 280

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  +     +    G  T L    Q +  RTIPGLE     R G      ++N PK L 
Sbjct: 281 QLRQDNKLGTLYNMVGFQTKLKHGAQLRVFRTIPGLENAEFARLGGLHRNTFLNSPKLLD 340

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            +L  +    L  AGQ+ G  GY E+A+ GL AG+ +A        +      + +G ++
Sbjct: 341 ESLRLRASPRLRFAGQMTGCEGYVESASIGLFAGLAAAADLVGQS-LAPPPPTTALGALL 399

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             +T   +        +      S +P N +  L P
Sbjct: 400 GHITGGHIE-------TIDAGPRSFQPMNINFGLFP 428


>gi|260433647|ref|ZP_05787618.1| tRNA:M(5)U-54 methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417475|gb|EEX10734.1| tRNA:M(5)U-54 methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 455

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 158/468 (33%), Gaps = 55/468 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA++G    +   +  T         +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAEMGVDVVIHEMRPQTGTFAHQTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  + PA  G     DRE +   +   + +   + V   EV 
Sbjct: 67  GLLHWEMRAANGLIMASADAHRLPA--GGALAVDREPFAETVTARLKAHPRVSVSHEEVT 124

Query: 126 GFNTEKNII--SSIVMQ--DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               + + I  +  +        I+  T       F                +  + +  
Sbjct: 125 ELPDQGHWIFATGPLTSPALGQAIQRETGAEALAFF-----------DAIAPIVYADTID 173

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           +  ++M+  +D G  +    A L+      D+ E            F+   +   + E  
Sbjct: 174 MSKAWMQSRYDKGETEEERTAYLNCPM-DRDQYEA-----------FIDALLAADKTEFH 221

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGL 300
              T    +      I+  A    +   +GP     + +      + +    + L  +  
Sbjct: 222 EGET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDVKPYAVVQLRRDNA 277

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T +    Q +  R IPGLE  +  R G      +IN P  L   +  K 
Sbjct: 278 LGTLFNIVGFQTKMKYGAQTEVFRMIPGLENASFARLGGIHRNTFINSPTLLDAQMRLKS 337

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              +  AGQI G  GY E+AA GL+AG  +A +          + DS +G +I  +T   
Sbjct: 338 RPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGHSLPPVPQ-DSAMGALIHHITGGA 396

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                           + +P N +  L       G  G RR ++    
Sbjct: 397 EA-------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 429


>gi|254510197|ref|ZP_05122264.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221533908|gb|EEE36896.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 456

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 67/474 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA++G    +   +  T         +  +   +  R    E +A+
Sbjct: 17  IVGGGMAGSEAAWQAAEMGVDVVIHEMRPQTGTFAHQTGNLAEMVCSNSFRSDDDEQNAV 76

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +  + PA  G     DRE +  ++   + +   + V   EV 
Sbjct: 77  GQLHWEMRAANGVIMTTADAHRLPA--GGALAVDREPFAESVTARLKAHPRISVTAEEVT 134

Query: 126 GFNTEKNII--SSIVMQ--DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               E + I  +  +        IR  T       F      +    I  G+        
Sbjct: 135 ELPAEGHWIFATGPLTSPVLGQAIRTRTGTEALAFFDAIAPIVYAESIDMGKAWMQSRYD 194

Query: 182 LFNS------FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              +      ++    D  + +    A L      + + E     +  +P   M ++   
Sbjct: 195 KGETEEERTAYLNCPMDRDQYEAFIDALLAADKTEFHEGETAGYFDGCLPIEVMAER--- 251

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                                         +   +GP     + +      + +    + 
Sbjct: 252 ----------------------------GRETLRHGPMKPVGLTNP--HQPDVKPHAVVQ 281

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T +    Q    R IPGLE  +  R G      +IN P  L  
Sbjct: 282 LRRDNALGTLFNIVGFQTKMKYGAQTDVFRMIPGLENASFARLGGIHRNTFINSPTLLDS 341

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            +  K    +  AGQI G  GY E+AA GL+AG  +A +          + DS +G +I 
Sbjct: 342 QMRLKSQPNIRFAGQITGVEGYVESAAMGLLAGRLAAAQLLGRTLPDVPQ-DSAMGALIH 400

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
            +T                   + +P N +  L    ++ G  G RR ++    
Sbjct: 401 HITGGAEA-------------KTFQPMNVNFGLF-RPVE-GLKGGRRGRKDRYK 439


>gi|254420020|ref|ZP_05033744.1| tRNA:m(5)U-54 methyltransferase [Brevundimonas sp. BAL3]
 gi|196186197|gb|EDX81173.1| tRNA:m(5)U-54 methyltransferase [Brevundimonas sp. BAL3]
          Length = 464

 Score =  229 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 169/493 (34%), Gaps = 65/493 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGKG 56
           + VIGGG AG EAA   A+ G S  L             H+T  +  + C+ +       
Sbjct: 10  IHVIGGGLAGSEAAWQIAQAGVSVILHEMRGVPGVKTDAHQTDGLAELVCSNSFRSDD-- 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               E +A+  L   +     I     +V + PA  G     DR+ +  A+  ++ +   
Sbjct: 68  ---WEYNAVGLLHAEMRALDSIIMACGDVNQVPA--GGALAVDRDAFSAAVTAKLAAHPL 122

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + +++ E+AG   ++     +              LT+      ++     +  +     
Sbjct: 123 ITIVREEIAGLPPQEWDNVIVAT----------GPLTSPALAEAILKATGEESLSFFDAI 172

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF-ADERLIPFSFMTDKITN 235
           +P     +      +   R     P       +     + Q+ A    +  S   +    
Sbjct: 173 APIVHADSIDFDIAWRQSRYDKEGPGGDAAAYVNCPMDKPQYEAFIDALLNSPKAEFKDW 232

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
             +                  I+  A    +   +GP     + +   R  + ++   + 
Sbjct: 233 EHVPYFD----------GCLPIEVMAERGRETLRHGPMKPVGLTNP--RDPQVKSYAIVQ 280

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L   +Q +  R IPGL+     R G      Y+N P+ L  
Sbjct: 281 LRQDNALGTLFNMVGFQTKLKHGVQAEVFRMIPGLQNAQFARLGGLHRNTYLNSPQLLDK 340

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  K +  L  AGQ+ G  GY E+AA GL+ G  +A ++   D +     ++ +G +++
Sbjct: 341 QLRLKAMPRLRFAGQVTGVEGYVESAAMGLLTGRLAAAQALGRD-VSAPPPETAMGALVE 399

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCIGERRQKRF 464
            +T   +                 +P N +  L P          G ++      R K+ 
Sbjct: 400 HITGGHLE------------GSKFQPMNINYGLLPPLEAPKVDEDGKRIHPKERGRAKKR 447

Query: 465 AKYIQEYNFLRSL 477
            + I+    L++ 
Sbjct: 448 LQSIRAMESLKAW 460


>gi|37523172|ref|NP_926549.1| tRNA (uracil-5-)-methyltransferase Gid [Gloeobacter violaceus PCC
           7421]
 gi|35214175|dbj|BAC91544.1| glucose-inhibited division protein [Gloeobacter violaceus PCC 7421]
          Length = 490

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 148/465 (31%), Gaps = 66/465 (14%)

Query: 22  AVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK----GHLVREIDALDGL 68
              A+ G    L           H T  +G + C+ + G +      G L  E+  L  L
Sbjct: 60  WQCARAGVPVVLSEMRPVRPSPAHHTDHLGELVCSNSFGAMATDRAPGLLKEELRRLGSL 119

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           +  VADA  +              G     DR +Y   +   + +   +++ + EV    
Sbjct: 120 VIAVADAHAV------------PAGGALAVDRAVYTRELTERVANHPLIELRREEVTEIP 167

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
               ++             +T  LT+     G+  +  L   +     SP  +  +   +
Sbjct: 168 AAGLVVF------------ATGPLTSEPLAHGLQALTGLGYLSFFDAASPIVAGESLDTE 215

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLE 248
             F   R   G  A  +                     +F     +  Q E         
Sbjct: 216 KVFLASRYDRGEAAYYNCPM------------SEPEYRAFWEALASAEQAELKEFEHEER 263

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
                   ++  A    +   YGP     + D   R G      + L  E     +    
Sbjct: 264 KFFEACLPVEELARRGYETLRYGPLKPVGLTDP--RTGRWPFACVQLRQEDRAGRLWNLV 321

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE+   +R G      ++ +P  L PTL+      L   G
Sbjct: 322 GFQTNLKWGEQKRVFQMIPGLEQAEFVRLGVMHRNTFLCSPHLLAPTLQFHAHPRLLACG 381

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ GT GY  A A G +AG N+AR +   D +     ++  G ++D ++     +P    
Sbjct: 382 QLTGTEGYTAAVAGGWLAGTNAARLAQSRDPLVLPV-ETMAGALVDYVSHG---DPKTFQ 437

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
                + +          L  I  ++    +R      + +   +
Sbjct: 438 PMPPNFAL----------LPEITPRIRHKQQRYWAYRDRALAAID 472


>gi|89895299|ref|YP_518786.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfitobacterium
           hafniense Y51]
 gi|122482353|sp|Q24UF0|TRMFO_DESHY RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|89334747|dbj|BAE84342.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 437

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/470 (20%), Positives = 164/470 (34%), Gaps = 70/470 (14%)

Query: 22  AVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGL 68
              A+ G    L           H T     + C+ ++ G G     G L  E+  LD L
Sbjct: 18  WQIARQGIEVELYEMRPVQMTPAHHTGHFAELVCSNSLKGAGLDNAAGLLKEEMRRLDSL 77

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           + RVAD   +              G     DRE +   + + +     + V + EV    
Sbjct: 78  LMRVADQYAV------------PAGGALAVDREQFSQEITKLLQEHPLIQVHREEVKSLP 125

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
                +             +T  LT     R +  +      A     +P  +L +  ++
Sbjct: 126 QAGIAVI------------ATGPLTAEGLAREIQKMTGEDALAFYDAAAPIVTLESINLE 173

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLE 248
             F   R   G P  L         TE+++  +R        +    +  E G       
Sbjct: 174 KAFWASRYDKGDPDYL-----NCPMTEEEY--KRFYHELLKAETAEVKGFEKGKVFEGCM 226

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
              ++       A       ++GP     + D   R G+R+   + L  E     +    
Sbjct: 227 PVEVM-------AARGEQTLTFGPLKPVGLIDA--RTGQRSYAVVQLRKENRAGTLFNLV 277

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N PK L      +K   LF AG
Sbjct: 278 GFQTHLKWGEQQRVFRLIPGLENAEFVRFGVMHRNTFLNAPKVLKADYSLQKTPQLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+ A GLVAG+N+ R+   L  + F + ++ +G +   L     ++     
Sbjct: 338 QITGVEGYVESTASGLVAGLNAVRRLKNLPTLIFPQ-ETALGALARHLEGSPSVD----- 391

Query: 428 TSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                     +P + +  L  P+ +++    E+  K  A+ + +    ++
Sbjct: 392 ---------FQPMSINYGLLPPLEVRIKAKKEKNAKISARALAKLEEFKA 432


>gi|218659968|ref|ZP_03515898.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli IE4771]
          Length = 207

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/200 (48%), Positives = 131/200 (65%), Gaps = 1/200 (0%)

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           GV EPYRMFTSRAEYR++LR DNAD RLTP+GM+LGC+   R++RF  Y  E    R+ L
Sbjct: 1   GVTEPYRMFTSRAEYRLTLRADNADARLTPLGMRLGCVSSARERRFTVYQAEVEAGRAQL 60

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD-ARKFSSLVIERLQ 537
            SL +T        ++   DG+ RTAY+ LSYPD+    L  + PD        V E L+
Sbjct: 61  MSLKVTPNEARRAGLNINLDGQRRTAYDLLSYPDYDFAALRRVWPDALGAIRPTVAEALE 120

Query: 538 IESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASK 597
           IE+ Y+ Y  RQ     + + +E+R IP DFDYS+L  LSNELK KLS  +PF++ QA+ 
Sbjct: 121 IEAGYSVYLDRQAAAIADQQRDEERRIPDDFDYSALSGLSNELKTKLSAARPFSVAQAAI 180

Query: 598 IEGMTPAALNLLLIYIKKNT 617
           +EGMTPAA+ LLL+++++ +
Sbjct: 181 VEGMTPAAIALLLVHLRRRS 200


>gi|260576783|ref|ZP_05844768.1| gid protein [Rhodobacter sp. SW2]
 gi|259021035|gb|EEW24346.1| gid protein [Rhodobacter sp. SW2]
          Length = 446

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 158/479 (32%), Gaps = 49/479 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   +  V +IGGG AG EAA   A+ G    +   +               +   +  R
Sbjct: 1   MAGMTQAVHIIGGGLAGSEAAWQVAQAGVPVVIHEMRPKVATFAHRGGNFAEMVCSNSFR 60

Query: 61  ----EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               E +A+  L   +  A G+   +    + PA  G     DRE +  A+   +L+   
Sbjct: 61  SDDDERNAVGLLHWEMRAAGGLIMEMAAAHRLPA--GGALAVDREAFSAAVTARLLAHPL 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           +     EV    +  + I             +T  LT+G     +      +  A     
Sbjct: 119 ISTCCEEVTELPSSGSWII------------ATGPLTSGALAESIRAATGAEALAFFDAI 166

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           +P        M   +   R   G  A      +       Q+        +F+   +   
Sbjct: 167 APIVYADTVDMSVAWMQSRYDKGETAEEQTAYMNCPMDRAQY-------EAFIDALLAAE 219

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           + E     T   ++      I+  A    +   +GP     + +     G +    + L 
Sbjct: 220 KTEFHEGET--ASYFDGCLPIEVMAERGRETLRFGPMKPVGLTNA-HAPGVKPYAVVQLR 276

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T +    Q    + IPGL+     R G      ++N P  L   +
Sbjct: 277 RDNKLGTLYNIVGFQTKMKYGAQTTVFKMIPGLQDARFARLGGIHRNTFLNSPTLLDNRM 336

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K    L  AGQI G  GY E+AA GL+AG  +A +    D +     ++ +G +I  +
Sbjct: 337 RLKSRPNLRFAGQITGVEGYVESAAMGLLAGRMAAAELLGRD-LPPPPPETAMGALIHHI 395

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP----IGMKLGCIGERRQKRFAKYIQE 470
           T                   + +P N +  L P     G + G   + R K +    +E
Sbjct: 396 TGGAEA-------------KTFQPMNVNFGLFPPNDAKGGRRG--RKDRYKAYTDRAKE 439


>gi|256026612|ref|ZP_05440446.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
          Length = 448

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 172/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 18  EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYCELVCSNSLGSDSLEN 77

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  +AD            K     G     DR+++   + R + +
Sbjct: 78  ASGLMKEELRILGSLLINIAD------------KNRVPAGQALAVDRDVFSEEVTRILKN 125

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I +            +  LT+      +  I   +     
Sbjct: 126 TENIEIIEEEFTEIPNDKIVIIT------------SGPLTSDKLFEKISEITGEESLYFY 173

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 174 DAAAPIVTFESINMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 221

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 222 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLTNP--RTEKMDYA 275

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 276 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 335

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+ A IN A +             S IG 
Sbjct: 336 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYAAINVANRLENKKEFIL-EDISEIGA 394

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 395 IVNYIT---------------EEKKKFQPMGANFGI------IRNLDENIRDKKEKYRKL 433

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 434 SERAIEYLKN 443


>gi|146277212|ref|YP_001167371.1| tRNA (uracil-5-)-methyltransferase Gid [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166989565|sp|A4WRQ2|TRMFO_RHOS5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|145555453|gb|ABP70066.1| gid protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 444

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 158/468 (33%), Gaps = 45/468 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++G G AG EAA  AA++G    L   +               +   +  R    E +A+
Sbjct: 7   IVGAGMAGSEAAWQAAEMGVPVVLHEMRPRVGTFAHRTGQFAEMVCSNSFRSDDDERNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  + PA  G     DR+ +  ++   +     + V+  E+A
Sbjct: 67  GLLHWEMRAARGLIMEMASAHRLPA--GGALAVDRDPFAESVTARLREHPLISVVDEELA 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
              ++ + I             +T  LT+ +    +  +   +  A     +P     + 
Sbjct: 125 ELPSDGDWII------------ATGPLTSSSLAESIRAVTGAQSLAFFDAIAPIVYAESI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         I    T  Q+        +F+   +   + E     T
Sbjct: 173 DMSVAWRQSRYDKGETEDERTAYINCPMTRDQY-------EAFIDALLAAEKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   +  ++    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNA-HKPQDKAHAVVQLRRDNKLGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    R IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQTSVFRMIPGLENASFARLGGIHRNTFLNSPTLLDDRMRLKLRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    D +     ++ +G +I  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRMAAAEILGRD-LPPPPPETAMGALITHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQE 470
                      + +P N +  L P           + R K +    + 
Sbjct: 399 ----------KTFQPMNVNFGLFPPIDARGGRRGRKDRYKAYTHRAKA 436


>gi|84516180|ref|ZP_01003540.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
 gi|84509876|gb|EAQ06333.1| glucose-inhibited division protein A [Loktanella vestfoldensis
           SKA53]
          Length = 453

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 162/488 (33%), Gaps = 49/488 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    +   +            +G +   +  R    E +A+
Sbjct: 9   IIGGGMAGSEAAWQAANAGIKVVIHEMRPKVGTFAHRTGNLGEMVCSNSFRSDDHEQNAV 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DR+ +  ++   + +  N+ V   E+ 
Sbjct: 69  GLLHWEMRAAGGLIMDMAEKHRLPA--GGALAVDRDPFAESVTAALTAHPNISVSYDEIT 126

Query: 126 GFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   II++  +   ++         T                   +    + ++  
Sbjct: 127 TLPKDGHWIIATGPLTSGALAAAIAAETGTEALA--------FFDAIAPIVYHETVNMDV 178

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G       A L         T+ Q+  E  I      DK   ++ E     
Sbjct: 179 AWMQSRYDKGETVEEQTAYL-----NCPMTKAQY--EDFIDALLAADKTEFKEGETAGYF 231

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++ E          +   +GP     + +     G +    + L  +     +
Sbjct: 232 DGCLPIEVMAE-------RGRETLRFGPMKPVGLTNA-HDPGNKPYAVVQLRRDNALGTL 283

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q      IPGLE     R G      +IN P  L   +  +    +
Sbjct: 284 YNIVGFQTKMKYGAQKTVFAMIPGLETAEFARLGGIHRNTFINSPSLLDDQMRLRSRPNI 343

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+AA GL+AG  +A +           T +  G ++  +T       
Sbjct: 344 RFAGQITGVEGYVESAAMGLLAGRMAAAELQGRSLSPVPVTTAM-GALVSHITGGAEA-- 400

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                       + +P N +  L P    L  +   R+ R  +Y    +  ++  +   L
Sbjct: 401 -----------KTFQPMNVNFGLFP---PLDGVKGGRRGRKDRYKAYTDRAKADWQD-WL 445

Query: 484 TSKNLSST 491
             + L++ 
Sbjct: 446 VPQALAAE 453


>gi|289764613|ref|ZP_06523991.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
 gi|289716168|gb|EFD80180.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. D11]
          Length = 434

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 174/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYCELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  +AD            + PA +      DR+++   + R + +
Sbjct: 64  ASGLMKEELRILGSLLINIADK----------NRVPAGQALA--VDRDVFSEEVTRILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I +            +  LT+      +  I   +     
Sbjct: 112 TENIEIIEEEFTEIPNDKIVIIT------------SGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESINMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLTNP--RTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+ A IN A +             S IG 
Sbjct: 322 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYAAINVANRLENKKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRNLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 420 SERAIEYLKN 429


>gi|83952147|ref|ZP_00960879.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
 gi|83837153|gb|EAP76450.1| glucose-inhibited division protein A [Roseovarius nubinhibens ISM]
          Length = 453

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 149/474 (31%), Gaps = 67/474 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    +   +  T         +  +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAASHGIPVTIHEMRPETGTFAHQTGDLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  + PA  G     DR+ +  A+   + +   + V  GE++
Sbjct: 67  GLLHWEMRAAGGLIMAMADRHRLPA--GGALAVDRDAFARAVTETLRAHPLVTVAPGEIS 124

Query: 126 GFNTEKNII--SSIVMQ--DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
               +   I  +  +        I   T       F      +    I   R        
Sbjct: 125 ALPEDGTWIIATGPLTSQGLGQAIAAETGAEALAFFDAIAPIVYHDSIDMSRAWMQSRYD 184

Query: 182 LFNS------FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
              +      ++    D  + +    A L      + + E     +  +P   M ++   
Sbjct: 185 KGETEEERTAYLNCPMDRDQYEAFIDALLAADKTEFHEGETAGYFDGCLPIEVMAER--- 241

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                                         +   +GP     + +      + +    + 
Sbjct: 242 ----------------------------GRETLRHGPMKPVGLTNP--HQPDVKPHAVVQ 271

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T +    Q    + IPGLE     R G      ++N P  L  
Sbjct: 272 LRRDNALGTLYNIVGFQTKMKYGAQADVFKMIPGLENARFARLGGIHRNTFLNSPTLLDD 331

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            +  K    +  AGQI G  GY E+AA GL+AG  +A + +        + DS +G +I 
Sbjct: 332 QMRLKSRPHIRFAGQITGVEGYVESAAMGLLAGRLAAAELSGKTPPPVPQ-DSAMGALIH 390

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
            +T                   + +P N +  L       G  G RR ++    
Sbjct: 391 HITGGAEA-------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 429


>gi|154253481|ref|YP_001414305.1| gid protein [Parvibaculum lavamentivorans DS-1]
 gi|205830313|sp|A7HXL5|TRMFO_PARL1 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|154157431|gb|ABS64648.1| gid protein [Parvibaculum lavamentivorans DS-1]
          Length = 480

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 162/494 (32%), Gaps = 46/494 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           V VIG G AG EAA   A+ G    L   +               L   +  R    E++
Sbjct: 18  VHVIGAGMAGSEAAWQLAQAGVPVVLHEMRPLVKTDAHHTDGFAELVCSNSFRSDDHELN 77

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +      V + PA  G     DR+ +   +  ++ +   + V +GE
Sbjct: 78  AVGLLHEEMRRAGSLLMEAAAVARVPA--GGALAVDRDNFSNYVTEKLTAHPLVTVERGE 135

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           + G        + I       +    +    G             I    +    S  + 
Sbjct: 136 IDGLPPADWDNAIIAT---GPLTSDALGKAIGELTGADELAFFDAIA--PIVYRDSIDMS 190

Query: 184 NSFMKFDFDTGRLKTGTPARLD-GKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             + +  +D     +   A       I    T +Q+  E  I      DK   ++ E   
Sbjct: 191 VCWFQSRYDKESAGSTAGAGGAGKDYINCPMTREQY--EAFIDALLTGDKTEFKEWEKDT 248

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLN 301
              +          I+  A    +   +GP     + +      + +    + L  +   
Sbjct: 249 PYFD------GCLPIEVMAERGPETLRFGPMKPVGLTNP--HAPDVKAYAIVQLRQDNAL 300

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T L    Q +  RTIPGLEK    R G      +IN PK L P +   K 
Sbjct: 301 GTLYNMVGFQTKLKHGEQTRVFRTIPGLEKAEFARLGGLHRNTFINSPKLLDPVMRLAKE 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             L  AGQI G  GY E+ A GL+AG  +A +          RT + +G ++  +T    
Sbjct: 361 PRLRFAGQITGVEGYVESGAMGLLAGRFAAAERLGRLPQTPPRTTA-LGALLAHITGDAD 419

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPI--------GMKLGCIGERRQKRFAKYIQEYN 472
                          + +P N +  L P         G +     +   ++ A   +   
Sbjct: 420 A-------------TTFQPMNVNFGLFPPPEVPLDENGKRPRGKAKAPARKRAYTSRALA 466

Query: 473 FLRSLLKSLVLTSK 486
            L + L+     ++
Sbjct: 467 DLEAWLRPRAEAAE 480


>gi|182679203|ref|YP_001833349.1| tRNA (uracil-5-)-methyltransferase Gid [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|205830325|sp|B2IGU6|TRMFO_BEII9 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|182635086|gb|ACB95860.1| gid protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 471

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 166/510 (32%), Gaps = 69/510 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + VIGGG +G EAA   AK G    L   +         +  +  L   +  R  DA   
Sbjct: 5   IHVIGGGLSGAEAAWQIAKAGIPVILHEMRPDRSTPAHHSADLAELVCSNSFRADDAESS 64

Query: 68  LMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +G     +     +  +  +  + PA  G     DR+ +   +   I +   + +++GE
Sbjct: 65  AIGILHREMRRLDSLILQAADCNRLPA--GGALAVDRQGFAAFVTAAIKASPLITLVRGE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF------------LRGVIHIGKLKIPA 171
           V     + + I        S    + +   TG               R  I + K    +
Sbjct: 123 VTEIPADWDQIIIATGPLTSETLAAHIKALTGEDDLAFFDAIAPVVYRDSIDMTKAWFQS 182

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                 P  +  + ++    D  + +      + G+ I + + E        +P   M +
Sbjct: 183 RYDKVGPGGNGAD-YINCPLDKEQYQAFVEGLIQGEKISFKEWEGTPYFNGCLPIEIMAE 241

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           +                                 +   +GP     + +       +   
Sbjct: 242 R-------------------------------GPETLRHGPMKPVGLTNAHAPTV-KPYA 269

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            + L  +     +    G  T L    Q    RTIPGLE+    R G      ++N PK 
Sbjct: 270 IVQLRQDNALGTLYNMVGFQTKLKHAEQIALFRTIPGLEQARFARLGGLHRNIFLNTPKV 329

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L   L  K    L  AGQI G  GY E+A  GL+ G  +A +    +      T + +G 
Sbjct: 330 LDMRLRLKADPRLRFAGQITGCEGYVESAGIGLLVGRMAACERLG-ESFVPPPTTTALGA 388

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL---------TPIGMKLGCIGERRQ 461
           +++ +T+  +        +      S +P N +  L         +P G +L    + + 
Sbjct: 389 LLNHITAGHIE-------TIDAGPRSFQPMNVNFGLFPPLTEKIVSPEGKRLRGPEKDQL 441

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSST 491
           K+     +    L +   +       L++ 
Sbjct: 442 KKRLLSQRAERDLEAWCTAPTCGPTPLAAE 471


>gi|205830474|sp|Q7NFC3|TRMFO_GLOVI RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 449

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 148/465 (31%), Gaps = 66/465 (14%)

Query: 22  AVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGLGK----GHLVREIDALDGL 68
              A+ G    L           H T  +G + C+ + G +      G L  E+  L  L
Sbjct: 19  WQCARAGVPVVLSEMRPVRPSPAHHTDHLGELVCSNSFGAMATDRAPGLLKEELRRLGSL 78

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           +  VADA  +              G     DR +Y   +   + +   +++ + EV    
Sbjct: 79  VIAVADAHAV------------PAGGALAVDRAVYTRELTERVANHPLIELRREEVTEIP 126

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
               ++             +T  LT+     G+  +  L   +     SP  +  +   +
Sbjct: 127 AAGLVVF------------ATGPLTSEPLAHGLQALTGLGYLSFFDAASPIVAGESLDTE 174

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLE 248
             F   R   G  A  +                     +F     +  Q E         
Sbjct: 175 KVFLASRYDRGEAAYYNCPM------------SEPEYRAFWEALASAEQAELKEFEHEER 222

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
                   ++  A    +   YGP     + D   R G      + L  E     +    
Sbjct: 223 KFFEACLPVEELARRGYETLRYGPLKPVGLTDP--RTGRWPFACVQLRQEDRAGRLWNLV 280

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFPTLETKKISGLFLAG 367
           G  T L    Q +  + IPGLE+   +R G      ++ +P  L PTL+      L   G
Sbjct: 281 GFQTNLKWGEQKRVFQMIPGLEQAEFVRLGVMHRNTFLCSPHLLAPTLQFHAHPRLLACG 340

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           Q+ GT GY  A A G +AG N+AR +   D +     ++  G ++D ++     +P    
Sbjct: 341 QLTGTEGYTAAVAGGWLAGTNAARLAQSRDPLVLPV-ETMAGALVDYVSHG---DPKTFQ 396

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
                + +          L  I  ++    +R      + +   +
Sbjct: 397 PMPPNFAL----------LPEITPRIRHKQQRYWAYRDRALAAID 431


>gi|163731891|ref|ZP_02139338.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter litoralis Och
           149]
 gi|161395345|gb|EDQ19667.1| tRNA (uracil-5-)-methyltransferase Gid [Roseobacter litoralis Och
           149]
          Length = 450

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 163/464 (35%), Gaps = 47/464 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA++G    L   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  + PA  G     DR+ +  ++   + +   + +  GE++
Sbjct: 67  GLLHWEMRAAGGLIMNMADKHRLPA--GGALAVDRDHFAQSVTDTLNAHPRITIDYGEIS 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 + I +     +S +  +    T G  L               +    +  +  +
Sbjct: 125 ELPATGHWIFATGPLTSSKLSAAIAAETGGAALAFF-------DAIAPIVYFDTIDMSRA 177

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
           +M+  +D G  +    A L          ++Q+  E  I      DK   ++ E      
Sbjct: 178 WMQSRYDKGETEAERTAYL-----NCPMDKEQY--EAFIDALLAADKTEFKEGETADYFD 230

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTDV 304
                 ++ E          +   +GP     + +      + +    + L  +     +
Sbjct: 231 GCLPIEVMAE-------RGRETLRFGPMKPVGLTNP--HQPDVKPYAVVQLRRDNKLGTL 281

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q    ++IPGL+  +  R G      ++N P  L   +  +    +
Sbjct: 282 YNIVGFQTKMKYGAQASVFKSIPGLKNASFARLGGIHRNTFLNAPTLLDAQMRLRSRPNI 341

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+A+ GL+AG  +A +   +  +      +  G +I  ++       
Sbjct: 342 RFAGQITGVEGYVESASMGLLAGRLAAAEILGI-ALSTPADTTATGALITHISGGAEA-- 398

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                       + +P N +  L P  ++ G    RR ++    
Sbjct: 399 -----------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 429


>gi|159030092|emb|CAO90983.1| gidA [Microcystis aeruginosa PCC 7806]
          Length = 213

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
               +DVIV+G GH+GCEAA   A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDEFDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G++AD   +Q RVLN  +GPAV   R Q D+  Y   M+  + +Q NL + +
Sbjct: 69  VDALGGEIGKIADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANLVIRE 128

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           G            +  +     +      V+LTTGTFL G I IG   + AGR G+  S 
Sbjct: 129 GMATDLILGANEQVLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFASV 188

Query: 181 SLFNS 185
            L  +
Sbjct: 189 GLTEN 193


>gi|298530283|ref|ZP_07017685.1| gid protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509657|gb|EFI33561.1| gid protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 442

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 173/485 (35%), Gaps = 49/485 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+S  + +IGGG AGCEAA   A+ G    +   K         + ++G L   +  R 
Sbjct: 1   MNQS--IAIIGGGLAGCEAALQLARQGVWVTIFEMKPQKYSPAHESQSLGELVCSNSFRS 58

Query: 62  IDALDG---LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           ++ + G   L   +     +      + + PA  G     DR+ +   +   +   E + 
Sbjct: 59  MEPVTGVGLLQQEMHRLGSLVMEAALMHRVPA--GKALAVDRDRFAQHLTSRVEEHEFIR 116

Query: 119 VIQGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           V + E+   +  E     ++++    +I        +    + +  +   +        +
Sbjct: 117 VHRREIQDLDDPELQGFDAVILSAGPLI--------SDPLAQSLFRVIGAQDLYFYDAIA 168

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P  S  +      F   R +      L+                    + F  + +   +
Sbjct: 169 PIVSAESIDYDKAFWGSRYRPEDDDYLNCPM------------SEEEYYRFYHELVGAEK 216

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           +         E H      I+  A       ++GP     + +   R GE+    + L  
Sbjct: 217 VPARDF--EEEKHFQGCMPIEAMAEKGELTMAFGPLKPVGLVNP--RTGEQPFAVVQLRA 272

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
           E L        G  T L    Q +    IPGLE    +R G      ++N P+ L   LE
Sbjct: 273 ENLEKTAFNLVGFQTRLKLGEQKRVFSMIPGLENAEFLRLGSMHRNTFVNAPQVLTRNLE 332

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            K   G++LAGQI+G  GY E+AA GL  G+    ++  +D     R D+ +G +++ L 
Sbjct: 333 LKARPGVYLAGQISGVEGYLESAACGLWLGLRLGLEARGIDPPAPPR-DTALGALMNHLQ 391

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                       S A Y    +P N    L P          R++    +  + ++   S
Sbjct: 392 ------------SDARY---FQPSNIHFGLFPPLKARAKKARRKELHAQRAQESFDKWLS 436

Query: 477 LLKSL 481
            L ++
Sbjct: 437 RLGAI 441


>gi|219669733|ref|YP_002460168.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfitobacterium
           hafniense DCB-2]
 gi|219539993|gb|ACL21732.1| gid protein [Desulfitobacterium hafniense DCB-2]
          Length = 437

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 162/470 (34%), Gaps = 70/470 (14%)

Query: 22  AVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGL 68
              A+ G    L           H T     + C+ ++ G G     G L  E+  LD L
Sbjct: 18  WQIARQGIEVELYEMRPVQMTPAHHTGHFAELVCSNSLKGAGLDNAAGLLKEEMRRLDSL 77

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           + RVAD   +              G     DRE +   + + +     + V + EV    
Sbjct: 78  LMRVADQYAV------------PAGGALAVDREQFSQEITKLLQEHPLIQVHREEVKSLP 125

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
                +             +T  LT       +  +      A     +P  +L +  ++
Sbjct: 126 QAGIAVI------------ATGPLTAEDLAGEIQQVTGEDALAFYDAAAPIVTLESIDLE 173

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLE 248
             F   R   G P  L         TE+++  +R        +    +  E G       
Sbjct: 174 KAFWASRYDKGDPDYL-----NCPMTEEEY--KRFYHELLKAETAEVKGFEKGKVFEGCM 226

Query: 249 THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPN 308
              ++       A       ++GP     + D   R G+R+   + L  E     +    
Sbjct: 227 PVEVM-------AARGEQTLTFGPLKPVGLIDA--RTGQRSYAVVQLRKENRAGTLFNLV 277

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      ++N PK L      +K   LF AG
Sbjct: 278 GFQTHLKWGEQQRVFRLIPGLENAEFVRFGVMHRNTFLNAPKVLKADYSLQKTPQLFFAG 337

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
           QI G  GY E+ A GLVAG+N+ R+   L  + F + ++ +G +   L     ++     
Sbjct: 338 QITGVEGYVESTASGLVAGLNAVRRLKNLPTLIFPQ-ETALGALARHLEGSPSVD----- 391

Query: 428 TSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                     +P + +  L  P+ +++    E+  K  A+ +      ++
Sbjct: 392 ---------FQPMSINYGLLPPLEVRIKAKKEKNAKISARALARLEEFKA 432


>gi|307292642|ref|ZP_07572488.1| gid protein [Sphingobium chlorophenolicum L-1]
 gi|306880708|gb|EFN11924.1| gid protein [Sphingobium chlorophenolicum L-1]
          Length = 445

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 171/490 (34%), Gaps = 67/490 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG----- 52
           V +IGGG AG EAA   A+ G    L            H+T  +  + C+ +        
Sbjct: 4   VHIIGGGLAGTEAAWQLAQAGVKVRLSEMRGSGDMTPAHQTEGLAELVCSNSFRSDDADK 63

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
              G L +E+  L  L+   A+ A          K PA  G     DR ++   +   + 
Sbjct: 64  NAVGLLHQEMRRLGSLIMAQAEPA----------KVPA--GSALAVDRHIFSDGVTNALA 111

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           S  N+++++  +     E   I  +       +    +  + G    G+ H+      A 
Sbjct: 112 SHPNVEIVRERIDMLPMEGMTI--VAT---GPLTAPALAASIGQ-AAGIDHLAFFDAIA- 164

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            +    S  +   +M   +D      G         I     ++Q+  +  +      +K
Sbjct: 165 PVVHHDSIDMDKCWMANRWDKIGPGGGEG----KDYINCPMNKEQY--QAFVQGLLGGEK 218

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              ++ E                 I+  A    +   +GP     ++D   R G      
Sbjct: 219 TDFKEWEKDTPY------FEGCMPIEVMASRGPETLRHGPMKPMGLDDP--RTGRWPYAV 270

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKEL 351
           + L  +  +  +    G  T L    Q +  RTIPGLEK    R G      +I +PK L
Sbjct: 271 VQLRQDNASGTLWNMVGFQTKLKHGAQTELFRTIPGLEKAEFARLGGLHRNTFIQSPKLL 330

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL  K    +  AGQ+ G  GY E+ A GL+AG  +A +      +     ++ +G +
Sbjct: 331 DATLRLKSAPHIRFAGQVTGCEGYVESGAIGLLAGRFAAAEILG-KPLAPLPPETALGAL 389

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +  +        Y             +P N +  L P    +    +++Q++ A   +  
Sbjct: 390 LGHVIGNVETADY-------------QPMNVNFGLFPPLEDV----KKKQRKEAMTARAR 432

Query: 472 NFLRSLLKSL 481
             L   L  L
Sbjct: 433 AALGQWLGEL 442


>gi|254477480|ref|ZP_05090866.1| tRNA:m(5)U-54 methyltransferase [Ruegeria sp. R11]
 gi|214031723|gb|EEB72558.1| tRNA:m(5)U-54 methyltransferase [Ruegeria sp. R11]
          Length = 451

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 161/467 (34%), Gaps = 53/467 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    L   +            +G +   +  R    E +A+
Sbjct: 11  IVGGGMAGSEAAWQAAHMGVDVVLHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +   +   + +  N+ V   EV 
Sbjct: 71  GLLHWEMRAANGLIMSTAEQHRLPA--GGALAVDRDPFAETVTARLKALPNVTVSYEEVT 128

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + + I  +  +    S      +   TGT                 +  + S  + 
Sbjct: 129 ELPEDGHWIFATGPLT---SPSLGKAIQRETGTEALAFFD------AIAPIVYAESIDMS 179

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L+      D+ E            F+   +   + E    
Sbjct: 180 KAWMQSRYDKGETEEERTAYLNCPM-DKDQYEA-----------FIDALLAADKTEFHEG 227

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-QIFLEPEGLNT 302
            T    +      I+  A    +   +GP     + +      +   H  + L  +    
Sbjct: 228 ET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDVKAHAVVQLRRDNALG 283

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K   
Sbjct: 284 TLFNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDSEMRLKSKP 343

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+AA GL+AG  +A +          + DS +G +I  +T     
Sbjct: 344 HIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGKTLPVVPQ-DSAMGALIHHITGGAEA 402

Query: 422 EPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKY 467
                         + +P N +  L  P+    G  G RR ++    
Sbjct: 403 -------------KTFQPMNVNFGLFQPV---DGLKGGRRGRKDRYK 433


>gi|329889957|ref|ZP_08268300.1| tRNA:m5U-54 methyltransferase [Brevundimonas diminuta ATCC 11568]
 gi|328845258|gb|EGF94822.1| tRNA:m5U-54 methyltransferase [Brevundimonas diminuta ATCC 11568]
          Length = 468

 Score =  227 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 161/501 (32%), Gaps = 79/501 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPAIGGLGKGHLVR--- 60
           + VIGGG AG EA    A+ G    L   +                +  L   +  R   
Sbjct: 11  IHVIGGGLAGSEATWQIAQAGVPVILHEMRRDEPEQVRTDAHHTTGLAELVCSNSFRSDD 70

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E +A+  L   +     +     +  + PA  G     DR  +  A+  ++ +   + +
Sbjct: 71  WEFNAVGLLHAEMRALDSLIMASGDANQVPA--GGALAVDRIGFSDAVTAKLEAHPLVTI 128

Query: 120 IQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGT------------FLRGVIHIGK 166
           ++ E+AG   E      +      S      ++  TG                  I    
Sbjct: 129 VREEIAGIPPEDWDNVIVATGPLTSPALADAILKATGEESLSFFDAIAPILHADSIDFDI 188

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               +    + P      +++    D  + +    A LDG    + + E     +  +P 
Sbjct: 189 AWRQSRYDKEGPGGDKA-AYVNCPMDKAQYEAFIDALLDGPKADFKEWENVPYFDGCLPI 247

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
             M ++                                 +   +GP     + ++     
Sbjct: 248 EVMAER-------------------------------GRETLRHGPMKPVGLTNQHNPTV 276

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            +    + L  +     +    G  T L    Q    R IPGLE     R G      ++
Sbjct: 277 -KPYAIVQLRQDNALGTLFNMVGFQTKLKYGAQTDVFRMIPGLENAQFARLGGLHRNTFL 335

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N PK L   +  K +  L  AGQ+ G  GY E+AA GL+ G  +A ++   D +     +
Sbjct: 336 NSPKLLDKQMRLKALPRLRFAGQVTGVEGYVESAAMGLLTGRLAAAQALGRD-LTPPPPE 394

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI---------GMKLGCI 456
           + +G +++ +T   +                 +P N +  L P          G ++   
Sbjct: 395 TAMGALVEHITGGHLE------------GSKFQPMNINYGLLPPLEAPKVDEDGKRIHPK 442

Query: 457 GERRQKRFAKYIQEYNFLRSL 477
              R K+  + I+  + L++ 
Sbjct: 443 ERGRAKKRLQSIRALDALKAW 463


>gi|302383721|ref|YP_003819544.1| gid protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302194349|gb|ADL01921.1| gid protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 465

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 164/489 (33%), Gaps = 57/489 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSCNPAIGGLGKGHLVR----E 61
           + VIGGG AG EAA   A+ G    +   +              +  L   +  R    E
Sbjct: 11  IHVIGGGLAGSEAAWQIAQAGVPVVIHEMRGVPGVKTDAHHTDGLAELVCSNSFRSDDWE 70

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A+  L   +     I     +V + PA  G     DRE +   +   + +   + V++
Sbjct: 71  HNAVGLLHAEMRALGSIIMASGDVNQVPA--GGALAVDREAFSRTVTDRLHAHPLVTVVR 128

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            E+AG   E+    S+++            LT+      ++ +   +  +     +P   
Sbjct: 129 EEIAGLPPEEWD--SVIVASG--------PLTSPALAEAILSLSGEEALSFFDAIAPIVH 178

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +      +   R     P       +     + Q+  E  I       K   ++ E  
Sbjct: 179 ADSIDFDIAWRQSRYDKEGPGGDAAAYVNCPMDKAQY--EAFIDALLDGPKAEFKEWENV 236

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPE 298
                     ++ E          +   +GP     +    D +V    ++   + L  +
Sbjct: 237 PYFDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNPRDPLV----KSYAIVQLRQD 285

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                +    G  T L    Q +  R IPGL+     R G      Y+N P+ L   L  
Sbjct: 286 NALGTLFNMVGFQTKLKHGAQAEVFRMIPGLQNAQFARLGGLHRNTYLNSPQLLDRQLRM 345

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           K +  L  AGQ+ G  GY E+AA GL+AG  +A +      +      + IG +++ +T 
Sbjct: 346 KAMPRLRFAGQVTGVEGYVESAATGLLAGRLAAAERLG-KPLDAPAAHTAIGALVEHITG 404

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTP---------IGMKLGCIGERRQKRFAKYI 468
             +                 +P N +  L P          G+K+      R K+    +
Sbjct: 405 GHLT------------GSKFQPMNINYGLLPPLDAPKIDEAGVKIPLKERGRAKKRLMSL 452

Query: 469 QEYNFLRSL 477
           +    L + 
Sbjct: 453 RALRELEAW 461


>gi|119386785|ref|YP_917840.1| tRNA (uracil-5-)-methyltransferase Gid [Paracoccus denitrificans
           PD1222]
 gi|166989563|sp|A1B9F0|TRMFO_PARDP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|119377380|gb|ABL72144.1| gid protein [Paracoccus denitrificans PD1222]
          Length = 446

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 150/446 (33%), Gaps = 43/446 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE----ID 63
           + +IG G AG EAA   A+ G    L   +               +   +  R     ++
Sbjct: 4   IHIIGAGLAGSEAAWQIARAGVPVVLHEMRPQVATFAHRTGDCAEMVCSNSFRSDDDRMN 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A G+   + +  + PA  G     DR+ +  A+ + + ++  +    GE
Sbjct: 64  AVGQLHWEMRAAGGLIMAMADRHRLPA--GGALAVDRDAFSQAVTQALQAEPLVSFQPGE 121

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           ++   +E + I             +T  LT+    R +  +      A     +P     
Sbjct: 122 ISDLPSEGHWIV------------ATGPLTSEALGRSIRSLTGEGSLAFFDAIAPIVHAE 169

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R   G         I    T + +  E  I      DK    + E    
Sbjct: 170 SIDMSICWRQSRYDKGETEEERTAYINCPMTREDY--EGFIDALLAADKTEFHEGETAGY 227

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ E          +   +GP     + +      E+    + L  +     
Sbjct: 228 FDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNA-HNPAEKPYAVVQLRRDNALGT 279

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T +    Q    R IPGL+  +  R G      ++N P+ +   L  +    
Sbjct: 280 LYNIVGFQTKMKYGAQVDVFRRIPGLQDASFARLGGIHRNTFLNSPRLIDDRLRLRARPH 339

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           L  AGQ+ G  GY E+AA GL+AG  +A ++   D      T S  G ++  +T      
Sbjct: 340 LRFAGQVTGVEGYVESAAMGLLAGRMAAAEALGRDLPPPPATTSM-GALVSHITGGADA- 397

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTP 448
                        + +P N +  L P
Sbjct: 398 ------------KTFQPMNVNFGLYP 411


>gi|288573041|ref|ZP_06391398.1| gid protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568782|gb|EFC90339.1| gid protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 104/500 (20%), Positives = 173/500 (34%), Gaps = 74/500 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M+++   + V+G G AG EAA   A+ G +  L+          HKT     + C+ ++G
Sbjct: 1   MMSKR--ITVVGAGLAGSEAAWQIAERGVNVTLVEMRPKVSSPAHKTDLFAELVCSNSLG 58

Query: 52  GLGK----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G  +    G L  E+ AL  L+ +VAD                  G     DRE +  ++
Sbjct: 59  GDTETTPAGILKSELRALGSLIMKVADE------------NSVPAGKALAVDREGFAASV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              +LS                +        + +   I   T  LT+    R +  +   
Sbjct: 107 TDRLLSHP------------LIQVERREVEEVPEGPAILA-TGPLTSEPLARSIGELAGE 153

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +        +P        M   +   R          G  I     E+Q+         
Sbjct: 154 ESLFFYDAVAPLVLSDTIDMTIAYRKDRYSEEEG----GDYINCPMNEEQY--RVFHKAL 207

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              ++      E  I              ++  A    D   +GP     +E  +   GE
Sbjct: 208 LEAERAPRHDFESKIKY------FEGCMPVEALAERGPDTLCFGPLRPVGLEHPV--TGE 259

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN 347
           R    + L  +  +  V    G  T L    Q +  R IPGLE V  +R G      Y+N
Sbjct: 260 RFFAVVQLRQDNRDGSVYNIVGFQTNLKWGEQDRVFRLIPGLENVEFVRKGVMHRNIYVN 319

Query: 348 -PKELFPTLETK-KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            PK L   L  +     ++LAGQI+G  GY E+ A G+VA +N      +L    +   +
Sbjct: 320 APKVLDGHLRFRGGAEDIYLAGQISGVEGYVESVAMGMVAALNLLSSDMELPLPEWPV-E 378

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRF 464
           + IG +++ L+   V                 +P N +  + P +G ++    ER ++  
Sbjct: 379 TAIGALLNRLSDDTV--------------KRFQPTNVNLGIFPSLGERIKLKPERCRRVA 424

Query: 465 AKYIQEYNFLRS--LLKSLV 482
            +     +   S    K L 
Sbjct: 425 LRARDRMDDFLSDTRWKKLW 444


>gi|163736318|ref|ZP_02143737.1| gid protein [Phaeobacter gallaeciensis BS107]
 gi|161390188|gb|EDQ14538.1| gid protein [Phaeobacter gallaeciensis BS107]
          Length = 447

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 159/466 (34%), Gaps = 51/466 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    L   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAHMGVEVVLHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DRE +   +   + +  N+ V   E+ 
Sbjct: 67  GLLHWEMRAANGLIMSTAEQHRLPA--GGALAVDREPFAETVTARLKALPNVSVSYEEIT 124

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + + I  +  +         +++                  I    +  + S  + 
Sbjct: 125 KLPADGHWIFATGPLT-------SASLGQAIQQETGAEALAFFDAIA--PIIYADSIDMS 175

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L+      D+ E            F+   +   + E    
Sbjct: 176 KAWMQSRYDKGETEEERTAYLNCPM-DKDQYEA-----------FIDALLAADKTEFHEG 223

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-QIFLEPEGLNT 302
            T    +      I+  A    +   +GP     + +      +   H  + L  +    
Sbjct: 224 ET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDIKAHAVVQLRRDNALG 279

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K   
Sbjct: 280 TLFNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDNQMRLKSRP 339

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T     
Sbjct: 340 NIRFAGQITGVEGYVESAAMGLLAGRMAAAEILGRDLPEVPQ-DSAMGALIHHITGGAEA 398

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                         + +P N +  L       G  G RR ++    
Sbjct: 399 -------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 429


>gi|85702776|ref|ZP_01033880.1| glucose-inhibited division protein A [Roseovarius sp. 217]
 gi|85671704|gb|EAQ26561.1| glucose-inhibited division protein A [Roseovarius sp. 217]
          Length = 452

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 36/427 (8%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA +G +  +   +            +  +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANMGVNVVIHEMRPKVKTFAHRTGDLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  + PA  G     DR+ +  ++   +L    + V   E+ 
Sbjct: 67  GLLHWEMRAAGGLIMAMAHENRLPA--GGALAVDRDRFAQSVTARLLDHPRITVQHDEIT 124

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 + I  +  +  +        +   TGT                 +    S  + 
Sbjct: 125 QLPESGHWIIATGPLTSEGL---GRAIAAETGTEALAFFD------AIAPIVYHESIDMS 175

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L+               +R    +F+   +   + E    
Sbjct: 176 RAWMQSRYDKGETEAERTAYLNCPM------------DRDQYEAFIDALLAADKTEFHDG 223

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNT 302
            T    +      I+  A    +   +GP     + +      + +    + L  +    
Sbjct: 224 ET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HAPDVKPHAVVQLRRDNALG 279

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q    + IPGLE     R G      ++N P  L   +  +   
Sbjct: 280 TLYNIVGFQTKMKYGAQTAVFKMIPGLENAQFARLGGIHRNTFLNSPTLLDAQMRLRSRP 339

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+AA GL+AG  +A +          + DS +G +I  ++     
Sbjct: 340 HIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGQTLPPVPQ-DSAMGALIHHISGGAEA 398

Query: 422 EPYRMFT 428
           + ++   
Sbjct: 399 KTFQPMN 405


>gi|94987290|ref|YP_595223.1| tRNA (uracil-5-)-methyltransferase Gid [Lawsonia intracellularis
           PHE/MN1-00]
 gi|205830361|sp|Q1MQ25|TRMFO_LAWIP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94731539|emb|CAJ54902.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 445

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 97/453 (21%), Positives = 150/453 (33%), Gaps = 56/453 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +++ +IGGG +GCE A   AK G S  L   K          P +  L   + +R  +  
Sbjct: 4   HNIAIIGGGLSGCECALTLAKFGFSVTLFEQKPQLFSPAHNTPLLAELVCSNSLRSNELT 63

Query: 66  DG---LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            G   L   + +       + +  + PA  G     DREL+   + + I S   + +I+ 
Sbjct: 64  TGIGLLKQELRELNSPLMAIADTCRVPA--GKALAVDRELFSKQVTQLIESHPKIHLIRE 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV+  +                     +++ TG      I      +             
Sbjct: 122 EVSSLS----------TSFLEKY--DRIIVATGPLASPNISNSLSTLIG----------- 158

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIW-DKTEKQ-FADERLIPFSFMTDKITNRQIEC 240
                   F        T   +D     W  + E+Q   D    P S+   +I    +  
Sbjct: 159 ---DKYLYFYDAIAPIVTADSIDMSIAFWGSRYEEQGEGDYLNCPMSYEEYQIFYSSLLK 215

Query: 241 GITRTNLETHRII----MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
           G   TN +  + I       I+  A        +GP     + +     G R    + L 
Sbjct: 216 GEKVTNSKVEKEIHFEGCMPIEALAERGEKTLLFGPFKPVGLINP--HTGLRPYAVLQLR 273

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
           PE LN  ++   G  T L    Q    R +PGL  V  +R G      YIN PK L   L
Sbjct: 274 PENLNKSMLNLVGCQTKLTYPAQDTIFRLVPGLSNVEFVRFGSMHRNTYINSPKILTDQL 333

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             +    + LAGQI G  GY E+ A GL   I     S     I        +G +++ +
Sbjct: 334 ALRNFPCIHLAGQITGVEGYVESIACGLWVSILLLALSKDKK-ILRPPKTCALGGLLEHI 392

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +                     +P N    L P
Sbjct: 393 SCPS---------------KQFQPSNIHFGLVP 410


>gi|220917982|ref|YP_002493286.1| gid protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254789163|sp|B8JES4|TRMFO_ANAD2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|219955836|gb|ACL66220.1| gid protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 453

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 155/480 (32%), Gaps = 65/480 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIGGG AG EAA   A+ G +  L+  K          P +  L   + +R    ++A
Sbjct: 6   VTVIGGGLAGTEAAWQLARAGVAVELVEMKPERRSPAHVLPGLAELVCSNSLRSDNPLNA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE +  A+   +     + ++  E+
Sbjct: 66  VGLLHEELRRLGSLVLGCADETRVPA--GDALAVDRERFSEAVTARLTGHAGVRIVHREL 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP----------AGRM 174
                   +         +    + +  TTG    G +H      P              
Sbjct: 124 EELPPPPALAVIATGPLTADALAARLAETTG----GRLHFYDAIAPIVAAESIDRSIAYA 179

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
                    + ++    D  +      A L G+ +     E+    E  +P   M ++  
Sbjct: 180 RSRYGKGSGDDYLNLPLDEAQYHAFVEALLQGEKVAAHGFEEPRYFEGCLPIEVMAER-- 237

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                                          ++ ++GP     +ED   R G R    + 
Sbjct: 238 -----------------------------GLEVLAHGPLKPVGLEDP--RTGRRPHAVVQ 266

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELF 352
           L  E ++       G  T L    Q +  R  +PGL     +R G      +++ P+ L 
Sbjct: 267 LRREDVDGTAWNLVGFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLA 326

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P L  +    LFLAGQI G  GY E+AA GL+A      +             + +G + 
Sbjct: 327 PDLSVRAAPHLFLAGQITGVEGYVESAACGLMAARAVLDRLAGR-AFRPPPPATALGALH 385

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             LT +     Y    S   + +            P+  +      R++    +  +E  
Sbjct: 386 RHLTGEAHPPGYDYQPSNVVFAL----------FPPLTGRHRGKAGRKEAHVERARKELA 435


>gi|297566733|ref|YP_003685705.1| gid protein [Meiothermus silvanus DSM 9946]
 gi|296851182|gb|ADH64197.1| gid protein [Meiothermus silvanus DSM 9946]
          Length = 436

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 172/470 (36%), Gaps = 71/470 (15%)

Query: 16  AGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG----KGHLVREI 62
           AG EAA  AA+ G    L           H+T     + C+ ++GG G    KG L  E+
Sbjct: 2   AGSEAALAAAQSGVKVRLYEMRPHKMTPAHRTEGFAELVCSNSLGGEGPSNAKGLLQAEM 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            A   ++ R AD   I              G     +RE +   + + + S   ++V++ 
Sbjct: 62  RAAGSVVMRAADLHRI------------PAGGALAVEREGFSAFITQAVSSHPYIEVVRE 109

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           E+        +I             +T  LT+      +  +   +        +P    
Sbjct: 110 EITEIPQGIVVI-------------ATGPLTSDALAARLQSLIGEEFLGFYDAAAPVVLG 156

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  +   +  GR             +    TE+++A           + +T  +     
Sbjct: 157 ESINLDIVYRAGRYGQ------SADYLNCPLTEEEYARF--------YEVLTQARKHTPH 202

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
              +LE        I+  A        +GP     + D   R G+     + L  E    
Sbjct: 203 DWEHLEFFE-GCMPIEEMARRGYQTPLFGPMKPVGLPDP--RTGQEPFAVVQLRAEDREG 259

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T L    Q   +++IPGLE   I+R G      Y+N P+ L PT++ ++  
Sbjct: 260 RMWSLVGFQTGLKWGDQKLLVQSIPGLEHAEIVRYGVMHRNTYLNAPRLLLPTMQFREYP 319

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            LF+ G + G  GY ++AA G +AG+N+AR +  ++      T S +G ++  L +    
Sbjct: 320 HLFVCGVLAGVEGYLDSAATGWLAGVNAARLALGMEPTLPPET-SMLGGLVRYLATANPQ 378

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
                           +P NA+  L P     G   E+R + + + +Q +
Sbjct: 379 --------------GFQPMNANWGLVPPIKGKGSKTEKRVQMYHRGLQAF 414


>gi|78044952|ref|YP_360613.1| tRNA (uracil-5-)-methyltransferase Gid [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575919|sp|Q3AB71|TRMFO_CARHZ RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|77997067|gb|ABB15966.1| glucose inhibited division protein A [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 433

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/465 (21%), Positives = 151/465 (32%), Gaps = 60/465 (12%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---ALDGLMGRVADAAGI 78
              AK G    L   +          P    L   + +  I+   A   L   +     +
Sbjct: 18  WQLAKRGIKVRLFEMRPKKFTPAHQTPLFAELVCSNSLGGINLDNAAGLLKEELRFLDSL 77

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
             +V +  + PA  G     DR L+   +   +     ++VI+ EV   N E+  +    
Sbjct: 78  VIKVADRNRIPA--GNALAVDRNLFAEEVTLRLSHHPLIEVIREEVVDINPERVTVI--- 132

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
                    ++  LT+      +    +          +P  +  +  M+  F  GR + 
Sbjct: 133 ---------ASGPLTSKALAENLKKYLESDYLYFFDAVAPIVAGESLDMEKLFFAGRYQQ 183

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
                 D   +     E+++   R        ++   +  E  I         +I     
Sbjct: 184 ------DKDYLNAPMNEEEYL--RFYEALITAERHPLKPFEKDIYYEGCLPIEVI----- 230

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A    D   +GP     I D   R G+     + L  E L  D     G  T L  + 
Sbjct: 231 --ASRGKDTLRFGPLKPKGIIDP--RTGKEPYAVVQLRRENLAGDYYNLVGFQTNLTWKE 286

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q++  R IPGLE    IR G   +  +IN P  L P L  KK   LF AGQI G  GY  
Sbjct: 287 QNRVFRLIPGLENAEFIRFGVMHKNTFINSPALLTPYLNLKKYPRLFFAGQITGGEGYVA 346

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           A A G  AGI +A             T + +G +I  L            T+  E     
Sbjct: 347 AIATGAWAGI-AASGMFGKMPEPLPET-TMLGGLIRYL-----------NTAPVEN---- 389

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLV 482
                     P+G+  G +    +K   K  +        LK L 
Sbjct: 390 --------FQPMGVNFGLVKPLDRKIKNKKERYKLLAERSLKDLK 426


>gi|163783045|ref|ZP_02178040.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881725|gb|EDP75234.1| glucose-inhibited division protein A [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 437

 Score =  225 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 163/457 (35%), Gaps = 74/457 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           +IVIGGG AG E+A   A  G    L           HKT  +  + C+  +GG     G
Sbjct: 5   IIVIGGGLAGVESAWRLANEGHKVILYEMRPQKQTPAHKTDKLAELVCSNTLGGTELTTG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ L+   A  A +              G     DRE++   + R I   
Sbjct: 65  AGLLKAEMSLLNSLVIEAAKEARV------------PAGGALGVDREIFASYITRRIEGH 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            N++V + EV     ++ +I  +  +  +        +V     +    I          
Sbjct: 113 HNVEVRREEVERIPEDEIVIVATGPLTSERLTEHIRELVGYDTLYFYDAIS--------- 163

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
            + ++ S           F   R   G     +   ++ ++  ++F +E L       +K
Sbjct: 164 PIVEAESVDFSK-----GFWGSRYGRGGDDYFNC--VLTEEDYRRFYEELLKA-----EK 211

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           +  +  E  +          I       A        +GP     + D     GER    
Sbjct: 212 VQPKDFEKAVHFEGCLPIEEI-------AQRGYQTLLFGPMKPVGLVDP--ETGERPFAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP-KEL 351
           + L  E     ++   G  T L    Q +  R IP L     +R G      +I   + L
Sbjct: 263 VQLRKENAEGTLLSLVGFQTKLTYPEQKRVFRLIPALRNAVFVRLGSMHRNTFIQSNRVL 322

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            P L  +K+  +F AGQI G  GY  ++A G++AGIN+ R +   + +     ++ +G +
Sbjct: 323 TPFLNMRKMENIFFAGQITGVEGYVASSATGILAGINAGRLAEGKE-LVVPPAETMLGSL 381

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
           +  +T K                  L+P N    L P
Sbjct: 382 VRYVTGKE---------------GELQPMNPVFGLLP 403


>gi|83953550|ref|ZP_00962271.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
 gi|83841495|gb|EAP80664.1| glucose-inhibited division protein A [Sulfitobacter sp. NAS-14.1]
          Length = 450

 Score =  225 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 160/465 (34%), Gaps = 49/465 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    L   +            +G +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANAGIQVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDNEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +  ++   +++  N+ V  GE+ 
Sbjct: 67  GLLHWEMRAANGLIMATAEKHRLPA--GGALAVDRDPFAQSVTDALMAHPNISVEYGEIT 124

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               E   II++  +    +    ++   TG                  +    S  +  
Sbjct: 125 DLPREGHWIIATGPLTSGDL--AQSIAAETGAEALAFFD------AIAPIIYHDSIDMSK 176

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G  +    A L         T+ Q+  E  I      DK   ++ E     
Sbjct: 177 AWMQSRYDKGETEEERTAYL-----NCPMTKDQY--EAFIDALLAADKTEFKEGETAGYF 229

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTD 303
                  ++ E          +   +GP     + +      + +    + L  +     
Sbjct: 230 DGCLPIEVMAE-------RGRETLRFGPMKPVGLTNPHD--PDNKPYAVVQLRRDNKLGT 280

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +    
Sbjct: 281 LYNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQPN 340

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +  AGQI G  GY E+AA GL+AG  +  +    +        +  G +I  +T      
Sbjct: 341 VRFAGQITGVEGYVESAAMGLLAGRLAVAEIKG-EAAAPPPPTTATGALITHITGGADA- 398

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                        + +P N +  L P  ++ G    RR ++    
Sbjct: 399 ------------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 429


>gi|310816013|ref|YP_003963977.1| gid protein [Ketogulonicigenium vulgare Y25]
 gi|308754748|gb|ADO42677.1| gid protein [Ketogulonicigenium vulgare Y25]
          Length = 445

 Score =  225 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 147/471 (31%), Gaps = 51/471 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA  G    +   + S          +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAANAGIRVVIHEMRPSVGTFAHRTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +   +   + +   ++V   EV 
Sbjct: 67  GLLHWEMRRANGLIMETAGRHRLPA--GGALAVDRDPFSQDITDRLRAHPLIEVSGEEVT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I             +T  LT+G     +         A     +P     + 
Sbjct: 125 ELPDQGQWII------------ATGPLTSGKLAEAIRAETGADSLAFFDAIAPIVYAESI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         I    T +Q+  E  I      DK         I   
Sbjct: 173 DMSVAWKQSRYDKGETEAERTAYINCPMTREQY--EAFIDALLEADKT--------IFHE 222

Query: 246 NLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                       I+  A    +   +GP     + +      E+    + L  +     +
Sbjct: 223 GETAGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNAHNPT-EKAYAVVQLRQDNALGTL 281

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q    + IPGL   +  R G      +IN P  L   +  K    +
Sbjct: 282 YNIVGFQTKMKYGAQTNVFKMIPGLHDASFARLGGIHRNTFINSPTLLDGQMRLKSRPNI 341

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E++A GL+A   +  +    +     +T +  G ++  +T       
Sbjct: 342 RFAGQITGVEGYVESSAMGLLAARLAVAEMQGRELAPVPQTTAM-GALVTHITGGADA-- 398

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP----IGMKLGCIGERRQKRFAKYIQE 470
                       S +P N +  L P     G + G     R K +    + 
Sbjct: 399 -----------KSFQPMNVNFGLFPPIDAKGGRRG--RATRYKAYTDRAKA 436


>gi|163741153|ref|ZP_02148545.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
 gi|161385506|gb|EDQ09883.1| glucose-inhibited division protein A [Phaeobacter gallaeciensis
           2.10]
          Length = 447

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 161/466 (34%), Gaps = 51/466 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    L   +            +G +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAHMGVEVVLHEMRPKVETFAHQTGNLGEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DRE +   +   + +  N+ V   E+ 
Sbjct: 67  GLLHWEMRAANGLIMSTAEQHRLPA--GGALAVDREPFAETVTARLKALPNVTVSYEEIT 124

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               + + I  +  +         +++                  I    +  + S  + 
Sbjct: 125 ELPADGHWIFATGPLT-------SASLGQAIQQETGAEALAFFDAIA--PIIYADSIDMS 175

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L+      D+ E            F+   +   + E    
Sbjct: 176 KAWMQSRYDKGETEEERTAYLNCPM-DKDQYEA-----------FIDALLAADKTEFHEG 223

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-QIFLEPEGLNT 302
            T    +      I+  A    +   +GP     + +      +   H  + L  +    
Sbjct: 224 ET--AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDIKAHAVVQLRRDNALG 279

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  K  S
Sbjct: 280 TLFNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDNQMRLKSRS 339

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            +  AGQI G  GY E+AA GL+AG  +A +   L+     + DS +G +I  +T     
Sbjct: 340 NIRFAGQITGVEGYVESAAMGLLAGRMAAAEILGLELPEVPQ-DSAMGALIHHITGGAEA 398

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                         + +P N +  L       G  G RR ++    
Sbjct: 399 -------------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 429


>gi|153827656|ref|ZP_01980323.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MZO-2]
 gi|149737869|gb|EDM52774.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Vibrio cholerae MZO-2]
          Length = 174

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 107/171 (62%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2   LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+DA+ GLM +  D AGIQFR LN  KGPAVR  R QADR LY+  ++  + +  NL + 
Sbjct: 62  EVDAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNVLENTPNLTLF 121

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           Q  V     E + I  +V Q         VVLT GTFL G IHIG      
Sbjct: 122 QQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYAG 172


>gi|114767416|ref|ZP_01446218.1| glucose-inhibited division protein A [Pelagibaca bermudensis
           HTCC2601]
 gi|114540501|gb|EAU43580.1| glucose-inhibited division protein A [Roseovarius sp. HTCC2601]
          Length = 446

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 149/463 (32%), Gaps = 45/463 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA+ G    +   +            +  +   +  R    E +A+
Sbjct: 3   IVGGGMAGSEAAWQAAEAGIPVVIHEMRPKVETFAHRTGDLAEMVCSNSFRSDDHEQNAV 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+  R     + PA  G     DR+ +   + + +    N+ V   E+ 
Sbjct: 63  GLLHWEMLQAGGLVMRQAYTHRLPA--GGALAVDRDAFSAGVTQVLRDHPNVSVSDEEIT 120

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                         +D   I   T  LT+      +         A     +P     + 
Sbjct: 121 ELP-----------EDGQWIFA-TGPLTSSALGAAIARETGADALAFFDAIAPIVYFDSI 168

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         I    T+ Q+  E  I      DK    + E      
Sbjct: 169 DMDVAWLQSRYDKGETEEERKAYINCPMTKPQY--EAFIDALLAADKTAFHEGETAGYFD 226

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++ E          +   +GP     + +   +  E+    + L  +     + 
Sbjct: 227 GCLPIEVMAE-------RGRETLRHGPMKPIGLTNS-HKPEEKAYAVVQLRRDNALGTLY 278

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q +  R IPGLE+    R G      ++N P  L   +  +    + 
Sbjct: 279 NIVGFQTKMKYGAQTEVFRMIPGLEEAKFARLGGIHRNTFLNSPTLLDAQMRLRSKPNIR 338

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E++A GL AG  +A +          +  ++ G +I  +T        
Sbjct: 339 FAGQITGVEGYVESSAMGLAAGRMAAAEILGRPLPEIPQDTAH-GALIHHITGGAEA--- 394

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                      + +P N +  L       G  G RR ++    
Sbjct: 395 ----------KTFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 425


>gi|87199932|ref|YP_497189.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123489351|sp|Q2G718|TRMFO_NOVAD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|87135613|gb|ABD26355.1| gid protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 456

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/487 (18%), Positives = 158/487 (32%), Gaps = 63/487 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGGLG 54
           ++ V +IGGG AG EAA   A+ G    L            H    +  + C+ +     
Sbjct: 2   THQVHIIGGGMAGTEAAWQLARRGIRVRLSEMRGGGDTTPAHNGDGLAELVCSNSFRSDD 61

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
                 E +A+  L   +     +        + PA  G     DR+++   ++  + +Q
Sbjct: 62  D-----EKNAVGLLHYEMRQCDSLLMAAAAKARVPA--GSALAVDRDVFSAEVEAALRAQ 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             L++++  V    ++   I             +T  LT  +    +         A   
Sbjct: 115 PTLEIVRERVDVLPSDGLTIV------------ATGPLTAPSLANSIGSATGADSLAFFD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG-----KTIIWDKTEKQFADERLIPFSFM 229
             +P     +  M   +   R   G  A L         I    T  Q+        +F 
Sbjct: 163 AIAPIVYRDSIDMGVAWMASRWDKGAEASLAMGGDGRDYINCPMTRDQY-------LAFR 215

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            + +   + E      N          I+  A    +   +GP     +++      E  
Sbjct: 216 EELLAGEKTEFKEWEANTPYFD-GCMPIEVMAARGEETLRFGPMKPVGLDNPHWATAEHP 274

Query: 290 -----GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
                   + L  +     +    G  T L    Q +  RTIPGLE     R G      
Sbjct: 275 NGRWPYAVVQLRQDNKLGTLWNMVGFQTKLKHAEQVRVFRTIPGLENAEFARLGGLHRNT 334

Query: 345 YIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           ++N P  L   L  K    +  AGQI G  GY E+ + G++AG+  A +   LD      
Sbjct: 335 FLNSPTLLDRQLRLKSAPNVRFAGQITGCEGYVESGSVGMLAGLMVAAQIAGLD-WSPPP 393

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKR 463
             + +G ++  +T     E             S +P N +  L    +      + R++ 
Sbjct: 394 RTTALGALLAHITGDAEAE-------------SFQPMNVNFGLFS-PVDASVKKKVRKEA 439

Query: 464 FAKYIQE 470
           +    + 
Sbjct: 440 YTARAKA 446


>gi|42561029|ref|NP_975480.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400612|sp|Q6MTB4|TMFO2_MYCMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|42492526|emb|CAE77122.1| glucose inhibited division protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321421|gb|ADK70064.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 438

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 157/436 (36%), Gaps = 43/436 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCFNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +  G  + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADGCKIDGDDALAVDREDFSKKLTEVIKNHPNITII 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V+  + E ++              +T  LTT      +  +   +        +   
Sbjct: 119 EQNVSHIDDENDLT-----------LIATGPLTTNELKEDIQRLIGKQKLFFIDASASII 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +  +      + +GR K G       K I     E++F            +++  ++ E 
Sbjct: 168 TKDSIDFNKVYYSGRHKLG-------KYICCPLNEQEF--NEFADNLINAEQVQLKEFEK 218

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ----IFLE 296
            I     +            A  S  +   GP    ++ D+       N HQ    + L 
Sbjct: 219 SIFFKGCQPIE-------QLAKTSKKLLLKGPMSPNNLLDQ-------NNHQPYSVVQLR 264

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T L    Q +  +TIPGLEK  I+R G   +  YIN PK L   L
Sbjct: 265 QDDAKDSLYNMVGFQTNLKWPEQKRVFQTIPGLEKAKIVRYGVMHKNYYINSPKILNFKL 324

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
           +  +   +F AGQI G  GY E+A+ G+ A IN     N         T + +G + + +
Sbjct: 325 QVMRKKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKIKPLPNT-TILGALTNYI 383

Query: 416 TSKGVLEPYRMFTSRA 431
           T+  +     M  + A
Sbjct: 384 TNSKIYSLKPMKCNLA 399


>gi|313665363|ref|YP_004047234.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma leachii PG50]
 gi|312949750|gb|ADR24346.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma leachii PG50]
          Length = 438

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 170/486 (34%), Gaps = 51/486 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +     + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADCCKIDGDDALAVDREDFSKRLTDVIKNHPNITII 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V+  N E ++              +T  LTT      +  +   +        +P  
Sbjct: 119 EQNVSHINDENDLT-----------LIATGPLTTNELKEDIQRLIGKQKLFFMDASAPII 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +  +      + +GR K G       K I     E++F     +      +++  ++ E 
Sbjct: 168 TKDSIDFNKVYYSGRHKLG-------KYICCPLNEQEF--NEFVDNLINAEQVQLKEFEK 218

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I     +            A  S  +   GP    ++ D   +  ++    + L  + +
Sbjct: 219 SIFFKGCQPIE-------QLAKTSKKLLLKGPMSPNNLLD---QNNQQPYAVVQLRQDDV 268

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  +TIPGLEK  I+R G   +  YIN PK L   L+  +
Sbjct: 269 KDSLYNMVGFQTNLKWPEQKRVFQTIPGLEKAKIVRYGVMHKNYYINSPKILNFKLQVMR 328

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              +F AGQI G  GY E+A+ G+ A IN     N         T + +G + + +T+  
Sbjct: 329 KKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKIKPLPNT-TILGALTNYITNSK 387

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           +               SL+P   +  +     +     + +   F             L 
Sbjct: 388 IY--------------SLKPMKCNLGILE--QENKYQSDDKFYSFNNSKNSLEEYIKQLN 431

Query: 480 SLVLTS 485
            ++ TS
Sbjct: 432 QILGTS 437


>gi|296328242|ref|ZP_06870772.1| (FADH(2)-oxidizing) [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154642|gb|EFG95429.1| (FADH(2)-oxidizing) [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 434

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 171/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYFSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  +AD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLMKEELRILGSLLINIADK----------NRVPAGQALA--VDRDGFSEEVTKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 TENIEIIEEEFTEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESIDMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--RTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-E 350
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN    
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L  TL  K    ++ AGQI G  GY  A A G+   +N A +             S IG 
Sbjct: 322 LDKTLRLKNRDNIYFAGQITGGEGYVTAIATGMYVAMNVANRLENKKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 420 SERAIKYLKK 429


>gi|332710062|ref|ZP_08430017.1| tRNA:m(5)U-54 methyltransferase [Lyngbya majuscula 3L]
 gi|332351205|gb|EGJ30790.1| tRNA:m(5)U-54 methyltransferase [Lyngbya majuscula 3L]
          Length = 474

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 167/500 (33%), Gaps = 71/500 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M N    V VIGGG AG EAA   A+ G    L           H T  +  + C+ + G
Sbjct: 1   MTNDKQQVNVIGGGLAGTEAAWQIAQAGVPVVLHEMRPVRLSPAHHTVELAELVCSNSFG 60

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  E+  L  ++   AD   +              G     DR ++   +
Sbjct: 61  AKSSDRAAGLLHEELRRLGSIIIGKADQHAV------------PAGGALAVDRAVFSREL 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + S   +++ + EV    T   +              +T  LT+      +     L
Sbjct: 109 TETLASHPLIELQREEVPQITTTGVV------------VLTTGPLTSPALAEDLQQFTGL 156

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +  +     SP     +      F   R   G  A L+                R     
Sbjct: 157 EYFSFFDAASPIVVGESINRDIAFMASRYDKGEAAYLNCPM------------NREQYRH 204

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED---KIVR 284
           F  +    ++ E                 I+  A    D   YGP     + D      R
Sbjct: 205 FWEELCAAQKAELKDFEQETAKFFEGCLPIEEMARRGEDTMRYGPLKPVGLFDARKGDFR 264

Query: 285 FGE----RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
             E    R    + L  E     +    G  T L    Q +  R IPGLE+   +R G  
Sbjct: 265 APENQHQRPYAVVQLRQEDKAGQLWNMVGFQTNLRWGEQKRVFRLIPGLEEAEFVRMGVM 324

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++N P+ L PTL+ KK S L  AGQ+ GT  Y  AAA G +AG N+AR    L+ +
Sbjct: 325 HRNTFLNAPELLQPTLQFKKRSTLLAAGQLVGTESYTAAAAGGWLAGTNAARLVLGLELV 384

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
               T + +G + D ++S     P         + I          L  + +++    ER
Sbjct: 385 TMPPT-TMMGALFDFISSAS---PKHFQPMPPNFGI----------LPELPVRIKNKRER 430

Query: 460 RQKRFAKYIQEYNFLRSLLK 479
                 + + + +   S L+
Sbjct: 431 YGAYRDRALADLDGWLSRLR 450


>gi|254436524|ref|ZP_05050018.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 307]
 gi|198251970|gb|EDY76284.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 307]
          Length = 451

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 153/464 (32%), Gaps = 47/464 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA LG    +   +            +  +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANLGQKVVIYEMRPKVETFAHRTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A GI     +  K PA  G     DR+ +  ++   + +  N+ V   E+ 
Sbjct: 67  GLLHWEMRAAGGIIMTTADAHKLPA--GGALAVDRDPFAESVTATLTAHPNISVSYEEID 124

Query: 126 GFNTEK-NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +   II++  +    +     +   TG                  +    S  +  
Sbjct: 125 TLPDDGQWIIATGPLTSGKL--ADAIAAETGAEALAFFD------AIAPILYHDSIDMTK 176

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G       A L+      D        E  I      DK   ++ E     
Sbjct: 177 AWMQSRYDKGETVEEQTAYLNCPMTKDD-------YEAFIDALLAADKAEFKEGETAGYF 229

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                  ++ E          +   +GP     + ++      +    + L  +     +
Sbjct: 230 DGCLPIEVMAE-------RGRETLRFGPMKPVGLTNE-HDPQNKPYAVVQLRRDNALGTL 281

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T +    Q    + IPGLE  N  R G      ++N P  L   +  K    +
Sbjct: 282 YNIVGFQTKMKYGAQTDVFKRIPGLENANFARLGGIHRNTFLNSPTLLDGQMRLKTKPNI 341

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI G  GY E+AA GL+AG  +  +           T +  G ++  +T       
Sbjct: 342 RFAGQITGVEGYVESAAMGLLAGRLAVAEMRGETLGPVPNTTA-TGALVTHITGGADA-- 398

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                       + +P N +  L P  ++ G    RR ++    
Sbjct: 399 -----------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 429


>gi|226355403|ref|YP_002785143.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus deserti VCD115]
 gi|226317393|gb|ACO45389.1| putative tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme (glucose inhibited division protein) [Deinococcus
           deserti VCD115]
          Length = 462

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 163/475 (34%), Gaps = 75/475 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLG---- 54
           + VIG G AG EAA  AA+LG    L   +          +    + C+ ++GG G    
Sbjct: 8   ITVIGAGLAGSEAALAAARLGVRVRLHEMRPTRMTPAHRSANFAELVCSNSLGGEGEKQS 67

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L  E+ ++ G +   ADA+ +              G     +R+ +   + R I   
Sbjct: 68  KGLLQAELRSVGGAVVTAADASRL------------PAGNALAVERDEFSARVTRTIREH 115

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++VI+GEVA       +I             ++  LT+      V  +      +   
Sbjct: 116 PLIEVIEGEVAAVPAGIAVI-------------ASGPLTSDALAADVARLTGSDRLSFYD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P        M   +  GR        L+     + K E     E L      T    
Sbjct: 163 AAAPVIDASTINMDVAWRAGRYDQSAD-YLNCP---FTKEEYLAFFEALEQARSHTPHDW 218

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +                I       A    D   +GP     +++   R G        
Sbjct: 219 EKLE----FFEGCMPIEEI-------ARRGVDTPRFGPMSPKGLDNP--RTGRWPYAVAQ 265

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     +    G  T L    Q   +  IPGLE   I+R G      Y+N P+ L  
Sbjct: 266 LRQEDREGRLWSLVGFQTGLKWGDQKAVVSLIPGLENAEIVRYGVMHRNTYLNAPEVLNA 325

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           TL+ +      +AG + GT GY E+A  G +AG N+AR +  L  +     +S +G +  
Sbjct: 326 TLQLRADPTKLVAGVLAGTEGYLESAGTGWLAGTNAARLALGLAPLIPPA-ESMLGGLTR 384

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKY 467
            L               +      +P N +  L P + +  G   +R+  +  K 
Sbjct: 385 YLA--------------SANPKGFQPMNVNWALVPELPVPEG---KRKWGKHEKR 422


>gi|259416559|ref|ZP_05740479.1| tRNA:M(5)U-54 methyltransferase [Silicibacter sp. TrichCH4B]
 gi|259347998|gb|EEW59775.1| tRNA:M(5)U-54 methyltransferase [Silicibacter sp. TrichCH4B]
          Length = 446

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 161/480 (33%), Gaps = 48/480 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G +  +   +            +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAHMGVNVVIHEMRPKVETFAHQTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +   +  ++ +  N+ +   EV 
Sbjct: 67  GLLHWEMRAANGLIMTTAGEHRLPA--GGALAVDRDPFAETVTAKLKALPNVRISYEEVT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                          D   I   T  LT+      +      +  A     +P     + 
Sbjct: 125 DLP-----------ADGQWIFA-TGPLTSPALGEAIQRETGAERLAFFDAIAPIVYADSI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +    T+ Q+        +F+   +   + E     T
Sbjct: 173 DMSQAWMQSRYDKGETEEERTAYLNCPMTKDQY-------EAFIDAILAADKTEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   +  E+    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP-HKPDEKAWAVVQLRRDNALGTLF 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    R IPGLE  +  R G      ++N P  L   +  K    + 
Sbjct: 283 NIVGFQTKMKYGAQADVFRMIPGLENASFARLGGIHRNTFLNSPTLLDHEMRLKSKPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A +    +     + DS +G +I  +T     + +
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAGRFAAAEILDKELPHVPQ-DSAMGALIHHITGGAEAKTF 401

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI---QEYNFLRSLLKSL 481
           +       + +  RP N            G  G RR ++        +     +  L++ 
Sbjct: 402 Q--PMNVNFGL-FRPVN------------GLKGGRRGRKDRYKAYTDRAKAAWQDWLQNF 446


>gi|99081232|ref|YP_613386.1| tRNA (uracil-5-)-methyltransferase Gid [Ruegeria sp. TM1040]
 gi|99037512|gb|ABF64124.1| gid protein [Ruegeria sp. TM1040]
          Length = 450

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 157/465 (33%), Gaps = 49/465 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    +   +            +  +   +  R    E +A+
Sbjct: 11  IVGGGMAGSEAAWQAAHMGVDVVIHEMRPKVETFAHQTGNLAEMVCSNSFRSDDDEQNAV 70

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A  +        + PA  G     DR+ +  ++  ++ +  N+ V   EV 
Sbjct: 71  GLLHWEMRAANSLIMTTAGEHRLPA--GGALAVDRDPFAESVTAKLKALPNVRVSYEEVT 128

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              TE + I  +  +           +                  I    +  + S  + 
Sbjct: 129 DLPTEGHWIFATGPLT-------SPALGEAIQRETGAERLAFFDAIA--PIVYAESIDMS 179

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L         T+ Q+  E  I      DK    + E    
Sbjct: 180 QAWMQSRYDKGETEEERTAYL-----NCPMTKDQY--EAFIDALLAADKTEFHEGETAGY 232

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ E          +   +GP     + +   +  E+    + L  +     
Sbjct: 233 FDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNP-HKPDEKAWAVVQLRRDNALGT 284

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T +    Q    R IPGLE     R G      ++N P  L   +  K    
Sbjct: 285 LFNIVGFQTKMKYGAQTDVFRMIPGLENAKFARLGGIHRNTFLNSPTLLDHEMRLKSKPN 344

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +  AGQ+ G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T      
Sbjct: 345 IRFAGQVTGVEGYVESAAMGLLAGRMAAAEILGKDLPQVPQ-DSAMGALIHHITGGAEA- 402

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                        + +P N +  L    ++ G  G RR ++    
Sbjct: 403 ------------KTFQPMNVNFGLF-RPVE-GLKGGRRGRKDRYK 433


>gi|197123193|ref|YP_002135144.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter sp. K]
 gi|226707902|sp|B4UII2|TRMFO_ANASK RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|196173042|gb|ACG74015.1| gid protein [Anaeromyxobacter sp. K]
          Length = 453

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 155/480 (32%), Gaps = 65/480 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIGGG AG EAA   A+ G +  L+  K          P +  L   + +R    ++A
Sbjct: 6   VTVIGGGLAGTEAAWQLARAGVAVELVEMKPERRSPAHVLPGLAELVCSNSLRSDNPLNA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE +  A+   +     + ++  E+
Sbjct: 66  VGLLHEELRRLGSLVLGCADETRVPA--GDALAVDRERFSEAVTARLTDHAAVRIVHREL 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP----------AGRM 174
                   +         +    + +  TTG    G +H      P              
Sbjct: 124 EELPPPPALAVIATGPLTADALAARLAETTG----GRLHFYDAIAPIVAAESIDRSIAYA 179

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
                    + ++    D  +      A L G+ +     E+    E  +P   M ++  
Sbjct: 180 RSRYGKGSGDDYLNLPLDEAQYHAFVEALLQGEKVAAHGFEEPRYFEGCLPIEVMAER-- 237

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
                                          ++ ++GP     +ED   R G R    + 
Sbjct: 238 -----------------------------GLEVLAHGPLKPVGLEDP--RTGRRPHAVVQ 266

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELF 352
           L  E ++       G  T L    Q +  R  +PGL     +R G      +++ P+ L 
Sbjct: 267 LRREDVDGTAWNLVGFQTRLTWPEQRRIFRAFLPGLANAEFVRLGQIHRNTFVDAPRVLA 326

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
           P L  +    LFLAGQI G  GY E+AA GL+A      +             + +G + 
Sbjct: 327 PDLSVRAAPHLFLAGQITGVEGYVESAACGLLAARAVLDRLAGR-AFRPPPPATALGALH 385

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
             LT +     Y    S   + +            P+  +      R++    +  +E  
Sbjct: 386 RHLTGEAHPPGYDYQPSNVVFAL----------FPPLTGRHRGKAGRKEAHVERARKELA 435


>gi|313673071|ref|YP_004051182.1| gid protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939827|gb|ADR19019.1| gid protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 440

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/494 (18%), Positives = 169/494 (34%), Gaps = 74/494 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGG-- 52
           ++  + +IGGG AG EAA   A+   +  L   +            +  + C+ ++    
Sbjct: 7   KNNTITIIGGGLAGSEAAFQLAEKKFNVVLYEMRPHKLTEAHQTGLMAELLCSNSLKSID 66

Query: 53  --LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L +E++ +  L+ ++A    I              G     DR+L+   +   
Sbjct: 67  ITNSNGLLKKELELMGSLLIKIAYETRI------------PAGNALSVDRKLFAEKVTNI 114

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + +  N+ +I+ E+      + +I             +T  LT+  F R +I++ K  + 
Sbjct: 115 LENHPNITIIREEITEIPNSRPLII------------ATGPLTSENFARNLINLTKDHLF 162

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
                 SP         +  F   R   G     D   +    T +++  E+        
Sbjct: 163 -FYDAISPIVDADTINYEKVFFKSRYDKG-----DADYLNCPMTREEY--EKFYFELINA 214

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +K+  R  E      N          I+  A        +GP     +E+ I   GE+  
Sbjct: 215 EKVEFRSFEKAKYYEN-------CIPIEELASRGFKTLIFGPMRPVGLENPI--TGEKYY 265

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             + L  E          G  T +  + Q +  R IPGLE V  +R G      YIN P 
Sbjct: 266 AVVQLRKENKEGTAYNIVGFQTKMKIQEQKRVFRLIPGLENVEFLRYGSIHRNTYINAPN 325

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L    + +    ++ AGQI+G  GY E+ A GL    +   +      +      +   
Sbjct: 326 ILEDNYKIRG-EDIYFAGQISGVEGYVESIASGLTVAFDIYHRYLHKSPLKLPEDTALFS 384

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +  + ++     EP     S   + +                 +  I ++  K+  +  +
Sbjct: 385 LQ-NYVSH---SEPKNFSPSNFHFGMLS--------------SIEGIKDKNLKKQRQAER 426

Query: 470 EYNFLRSLLKSLVL 483
               +   L+ L +
Sbjct: 427 ALIKIEDFLRDLKI 440


>gi|205830475|sp|Q1GGU2|TRMFO_SILST RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 446

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 157/465 (33%), Gaps = 49/465 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA +G    +   +            +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAHMGVDVVIHEMRPKVETFAHQTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A  +        + PA  G     DR+ +  ++  ++ +  N+ V   EV 
Sbjct: 67  GLLHWEMRAANSLIMTTAGEHRLPA--GGALAVDRDPFAESVTAKLKALPNVRVSYEEVT 124

Query: 126 GFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              TE + I  +  +           +                  I    +  + S  + 
Sbjct: 125 DLPTEGHWIFATGPLT-------SPALGEAIQRETGAERLAFFDAIA--PIVYAESIDMS 175

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            ++M+  +D G  +    A L         T+ Q+  E  I      DK    + E    
Sbjct: 176 QAWMQSRYDKGETEEERTAYL-----NCPMTKDQY--EAFIDALLAADKTEFHEGETAGY 228

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
                   ++ E          +   +GP     + +   +  E+    + L  +     
Sbjct: 229 FDGCLPIEVMAE-------RGRETLRHGPMKPVGLTNP-HKPDEKAWAVVQLRRDNALGT 280

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T +    Q    R IPGLE     R G      ++N P  L   +  K    
Sbjct: 281 LFNIVGFQTKMKYGAQTDVFRMIPGLENAKFARLGGIHRNTFLNSPTLLDHEMRLKSKPN 340

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +  AGQ+ G  GY E+AA GL+AG  +A +    D     + DS +G +I  +T      
Sbjct: 341 IRFAGQVTGVEGYVESAAMGLLAGRMAAAEILGKDLPQVPQ-DSAMGALIHHITGGAEA- 398

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                        + +P N +  L    ++ G  G RR ++    
Sbjct: 399 ------------KTFQPMNVNFGLF-RPVE-GLKGGRRGRKDRYK 429


>gi|56696568|ref|YP_166925.1| tRNA (uracil-5-)-methyltransferase Gid [Ruegeria pomeroyi DSS-3]
 gi|81170599|sp|Q5LST0|TRMFO_SILPO RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|56678305|gb|AAV94971.1| gid protein [Ruegeria pomeroyi DSS-3]
          Length = 449

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 163/483 (33%), Gaps = 62/483 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGG-----LGK 55
           ++GGG AG EAA  AA+ G    +           H+T  +  M C+ +           
Sbjct: 7   IVGGGMAGSEAAWQAAQQGIDVVIHEMRPTVGTFAHQTGNLAEMVCSNSFRSDDDEQNAV 66

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E+ A  GL+   ADA  +              G     DR+ +   +   + +  
Sbjct: 67  GLLHWEMRAAGGLIMSAADAHRL------------PAGGALAVDRDPFAETVTARLHAHP 114

Query: 116 NLDVIQGEVAGFNTEKNII--SSIVMQ--DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            + V   EV     + + I  +  +      + I+  T       F              
Sbjct: 115 RVSVTAEEVTELPRDGHWIFATGPLTSPALGAAIQAETGAEALAFF-----------DAI 163

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
             +  + +  +  ++M+  +D G  +    A L+               +R    +F+  
Sbjct: 164 APIVYADTIDMSRAWMQSRYDKGETEEERTAYLNCPM------------DRDQYEAFIDA 211

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNG 290
            +   + E     T   T+      I+  A    +   +GP     + +      + +  
Sbjct: 212 LLAADKTEFHEGET--ATYFDGCLPIEVMAERGRETLRHGPMKPVGLTNP--HQPDVKAY 267

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PK 349
             + L  +     +    G  T +    Q    +TIPGLE  +  R G      ++N P 
Sbjct: 268 AVVQLRRDNALGTLYNIVGFQTKMKYGAQTAVFKTIPGLENASFARLGGIHRNTFLNSPT 327

Query: 350 ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
            L   +  K    +  AGQI G  GY E+AA GL+AG  +A +          + DS +G
Sbjct: 328 LLDAQMRMKSRPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEIQGRALPEVPQ-DSAMG 386

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            +I  +T     + ++       + +    D           +     +R ++ +  ++ 
Sbjct: 387 ALIHHITGGAEAKTFQ--PMNVNFGLFRPVDGLKGGRRGRKDRYKAYTDRAKEAWTSWLA 444

Query: 470 EYN 472
           E  
Sbjct: 445 EAE 447


>gi|225181362|ref|ZP_03734806.1| gid protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167943|gb|EEG76750.1| gid protein [Dethiobacter alkaliphilus AHT 1]
          Length = 438

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 98/458 (21%), Positives = 160/458 (34%), Gaps = 46/458 (10%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGRVADAAGI 78
              AK G S  L   +   +      P +  L   + +R     +A+  L   +     +
Sbjct: 18  WQVAKTGLSVRLYEMRPHKMTPAHHGPHLAELVCSNSLRAASLENAVGLLKEEMRKFDSL 77

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
                +    PA  G     DRE +   +   I +  N+  ++ EV              
Sbjct: 78  IIAQADKHAVPA--GGALAVDREGFARGVTEAIDNLPNVVRVEEEVREIPA--------- 126

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
                +I   T  LT       +  +            +P  +  +  MK  F   R   
Sbjct: 127 TTAGPVILA-TGPLTAEDLADEIGRLTGEDSLYFYDAAAPIVTAESIDMKKVFCASRYGK 185

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
           GT   L+      ++ E Q          F T   T    E G   T+ + +      ++
Sbjct: 186 GTADYLNCPM---NEEEYQ---------QFYTALTTAEVYE-GHCDTDEKKYFEGCMPVE 232

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A    +   +GP     + D     G++    + L  +     +    G  T L    
Sbjct: 233 VMASRGYETLKFGPLKPVGLTDP--NTGQQAFAVVQLRQDNAAATLYNMVGFQTRLRWPE 290

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q +  R IPGLE     R G      YIN PK L PTL+ K+   LF AGQ+ G  GY E
Sbjct: 291 QKRVFRMIPGLENAEFARYGVMHRNTYINSPKTLQPTLQFKENDKLFFAGQVTGVEGYVE 350

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           +AA GLVAGIN+AR ++  D + +    ++ G +   +T     +P            + 
Sbjct: 351 SAAMGLVAGINAARVADGQDPLVWPNETAH-GALTRYIT---TADP-----------GNF 395

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           +P N +  + P         ER++    + + +    R
Sbjct: 396 QPMNVNFGIFPPLATRVPKKERKKAMAERALAKVEQWR 433


>gi|170078989|ref|YP_001735627.1| tRNA (uracil-5-)-methyltransferase Gid [Synechococcus sp. PCC 7002]
 gi|205830341|sp|B1XK17|TRMFO_SYNP2 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|169886658|gb|ACB00372.1| glucose inhibited division protein A [Synechococcus sp. PCC 7002]
          Length = 456

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 101/486 (20%), Positives = 160/486 (32%), Gaps = 68/486 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V VIGGG AG EAA   A+ G    L           H T+ +  + C+ + G       
Sbjct: 8   VTVIGGGLAGTEAAWQIAQAGVPVTLYEMRPVQKSPAHHTADLAELVCSNSFGAASSDRA 67

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++   AD   +              G     DR ++   + +++   
Sbjct: 68  AGLLHEELRRLQSVIISTADQHRV------------PAGGALAVDRGVFSQDLTQKLAEH 115

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +   +  +    +E   +             +T  LTT      +     L+  +   
Sbjct: 116 PLVTFRREPLDQIPSEGITVL------------ATGPLTTAALATELQQFTGLEYMSFFD 163

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP     +      F   R   G  A L+               +     +F      
Sbjct: 164 AASPIIVGESINQDIAFLASRYDKGEAAYLNCPM------------DPAQYQAFRAALCE 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE------- 287
             Q E                 I+  A    D   +GP     + D   R G+       
Sbjct: 212 AEQAELKDFELETAKFFEGCLPIEELARRGEDTMRFGPLKPVGLFDA--RLGDFRAPENK 269

Query: 288 --RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
             R    + L  E     +    G  T L    Q +  R IPGLE    +R G      +
Sbjct: 270 GKRPYAVVQLRQEDKQGQLWNMVGFQTNLRWGEQKRVFRMIPGLENAEFVRMGVMHRNTF 329

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +N P+ L  TL+ KK   L  AGQ+ GT GY  AAA G +AG N+AR +  L  +    T
Sbjct: 330 LNSPELLEATLQFKKRPTLLAAGQLIGTEGYTAAAAGGWLAGTNAARLAQGLTPLTLPET 389

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRF 464
            + +G + + +       P         + I   P  A+ R+     + G   +R     
Sbjct: 390 -TMMGALFEFI---HSASPKHFQPMPPNFGII--PPLAE-RVRSKKERYGVYRDRSLTDL 442

Query: 465 AKYIQE 470
            ++ +E
Sbjct: 443 EQWREE 448


>gi|83942331|ref|ZP_00954792.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
 gi|83846424|gb|EAP84300.1| glucose-inhibited division protein A [Sulfitobacter sp. EE-36]
          Length = 450

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 161/465 (34%), Gaps = 49/465 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    L   +            +G +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANAGIQVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDNEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +  ++   +++  N+ V  GE+ 
Sbjct: 67  GLLHWEMRAANGLIMATAEKHRLPA--GGALAVDRDPFAQSVTDALMAHPNISVEYGEIT 124

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               E   II++  +    +    ++   TG                  +    S  +  
Sbjct: 125 DLPREGHWIIATGPLTSGDL--AQSIAAETGAEALAFFD------AIAPIIYHDSIDMSK 176

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G  +    A L         T+ Q+  E  I      DK   ++ E     
Sbjct: 177 AWMQSRYDKGETEEERTAYL-----NCPMTKDQY--EAFIDALLAADKTEFKEGETAGYF 229

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTD 303
                  ++ E          +   +GP     + +      + +    + L  +     
Sbjct: 230 DGCLPIEVMAE-------RGRETLRFGPMKPVGLTNPHD--PDNKPYAVVQLRRDNKLGT 280

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISG 362
           +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +  S 
Sbjct: 281 LYNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQSN 340

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           +  AGQI G  GY E+AA GL+AG  +  +    +        +  G +I  +T      
Sbjct: 341 VRFAGQITGVEGYVESAAMGLLAGRLAVAEIKG-EAAAPPPPTTATGALITHITGGADA- 398

Query: 423 PYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                        + +P N +  L P  ++ G    RR ++    
Sbjct: 399 ------------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 429


>gi|83319822|ref|YP_424450.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|123535705|sp|Q2SS13|TMFO1_MYCCT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|83283708|gb|ABC01640.1| glucose inhibited division protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 438

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 176/494 (35%), Gaps = 58/494 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNDIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +     + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADSCKIDGDDALAVDREDFSKKLTDVIKNHPNITII 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V+  + E ++              +T  LTT      +  +   +        +P  
Sbjct: 119 EQNVSYIDDENDLT-----------LIATGPLTTNELKEDIQRLIGKQKLFFMDASAPII 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +  +      + +GR K G       K I     E++F   + +      +++  ++ E 
Sbjct: 168 TKDSIDFNKVYYSGRHKQG-------KYICCPLNEQEF--NKFVDDLVNAEQVQLKEFEK 218

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I     +            A  S  +   GP    ++ D   +  ++    + L  +  
Sbjct: 219 SIFFKGCQPIE-------QLAKTSKKLLLKGPMSPNNLLD---QNNQQPYAVVQLRQDDA 268

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  +TIPGLEK  I+R G   +  YIN PK L   L+  +
Sbjct: 269 KDSLYNMVGFQTNLKWPEQKRVFQTIPGLEKAKIVRYGVMHKNYYINSPKILNFKLQVIR 328

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              +F AGQI G  GY E+A+ G+ A IN     N         T + +G + + +T   
Sbjct: 329 KKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKIKPLPNT-TILGALTNYIT--- 384

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                               ++    L P+   LG + +  + +       YN  ++ L+
Sbjct: 385 --------------------NSKIYSLKPMKCNLGILEQENKYQSNDKFYSYNNSKNSLE 424

Query: 480 SLVLTSKNLSSTSI 493
           + +     +  T+I
Sbjct: 425 NYIEQLNKILRTNI 438


>gi|126736453|ref|ZP_01752194.1| gid protein [Roseobacter sp. CCS2]
 gi|126713991|gb|EBA10861.1| gid protein [Roseobacter sp. CCS2]
          Length = 451

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 156/471 (33%), Gaps = 46/471 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    +   +            +G +   +  R    E +A+
Sbjct: 7   IIGGGMAGSEAAWQAANAGLQVVIHEMRPKVETFAHRTGNLGEMVCSNSFRSDDHEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+  +     + PA  G     DR+ +  ++   +++  N+ V   E+ 
Sbjct: 67  GLLHWEMMQANGLIMQTAYKHRLPA--GGALAVDRDPFAESVTAALIAHPNISVSYEEIT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + N I             +T  LT+G+    +      +  A     +P     + 
Sbjct: 125 TLPEDGNWII------------ATGPLTSGSLAEAIQKETGAEALAFFDAIAPIVYHDSI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +     + Q+  E  I      DK   ++ E      
Sbjct: 173 NMDVAWMQSRYDKGDTEAERTAYLNCPMGKDQY--EAFIDALLDADKTAFKEGETAGYFD 230

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++ E          +   +GP     + +       +    + L  +     + 
Sbjct: 231 GCLPIEVMAE-------RGRETLRFGPMKPVGLTNA-HDPENKAYAVVQLRRDNALGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    +TIPGLE+    R G      +IN P  L   +  +    + 
Sbjct: 283 NIVGFQTKMKYAAQKAVFKTIPGLEEAEFARLGGIHRNTFINAPTLLDDEMRLRSRPNIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+AG  +  +           T +  G ++  +T        
Sbjct: 343 FAGQITGVEGYVESAAMGLLAGRMAVAEMTGQTLAPVPNTTAM-GALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
                      + +P N +  L P    L  +   R+ R  +Y    +  +
Sbjct: 399 ----------KTFQPMNVNFGLFP---PLEGVKSGRRNRKDRYKGYTDRAK 436


>gi|239904852|ref|YP_002951590.1| Gid protein [Desulfovibrio magneticus RS-1]
 gi|239794715|dbj|BAH73704.1| Gid protein [Desulfovibrio magneticus RS-1]
          Length = 437

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 153/482 (31%), Gaps = 65/482 (13%)

Query: 15  HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDALDGLMGR 71
            AGCE A   A+ G ++ +   K +        P +  L   + +R    + A+  L   
Sbjct: 10  LAGCECALALARAGVASTIFECKPALYSPAHVLPGLAELVCSNSLRSDEPVTAVGLLKVE 69

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
           +A+              PA  G     DR+ +   M   I ++  + +++ E+ G     
Sbjct: 70  MAELGSAVIAAARETAVPA--GKALAVDRDRFSENMTARIEAEPLVTLVRREIMGL---- 123

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                    D ++     VV+  G      +    L+   G                  F
Sbjct: 124 --------SDPALAGFEAVVVAAGPLASDRMAASLLETIGG--------------EGLYF 161

Query: 192 DTGRLKTGTPARLDGKTIIW-DKTEKQFADERLIPFS------FMTDKITNRQIECGITR 244
                   T   +D     W  + +    D    P        F    +T R++      
Sbjct: 162 YDAIAPIVTTESVDMDKAFWASRWQDGEGDYLNCPMDKDEYLAFWNALLTARKVPSREF- 220

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              E H      I+  A       ++GP     + D   R G      + L PE +    
Sbjct: 221 -EKEIHFEGCLPIEAMAERGERTLTFGPMKPVGLTDP--RTGRWPYAVVQLRPENVARST 277

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
           +   G  T L    Q +  R IP L      R G      ++N PK L   LE     G+
Sbjct: 278 MNLVGFQTKLVYGEQERVFRMIPALHAAEFTRLGSIHRNTFVNAPKVLNERLELVARPGV 337

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           +LAGQI G  GY E+AA GL  G     +  + + +      + +G +++ L +      
Sbjct: 338 YLAGQITGVEGYVESAACGLWLGTQLGARLARGEELPPPPVVTALGALLNHLRTPA---- 393

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                         +P N +  LTP         E + K+  + +      R       +
Sbjct: 394 -----------KKFQPSNVNFGLTPPL-------EEKMKKANRKMAYPERARKAWGEWFV 435

Query: 484 TS 485
             
Sbjct: 436 RP 437


>gi|329850438|ref|ZP_08265283.1| tRNA:m5U-54 methyltransferase [Asticcacaulis biprosthecum C19]
 gi|328840753|gb|EGF90324.1| tRNA:m5U-54 methyltransferase [Asticcacaulis biprosthecum C19]
          Length = 463

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 95/506 (18%), Positives = 160/506 (31%), Gaps = 72/506 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M   S  + ++GGG AG EAA    + G    L           H TS    + C+ +  
Sbjct: 1   MTVSSEPIHIVGGGLAGSEAAWQIVQRGVPVVLHEMRGIKPTNAHHTSDFAELVCSNSFR 60

Query: 52  G-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
                    G L  E+     L+   AD                  G     DR+ +  A
Sbjct: 61  SDDWQFNAVGLLHEEMRRGGSLILACADKH------------QVPAGGALAVDRDGFSAA 108

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           +   + +   + V++ EV     +      +              LT+ +  + V+ +  
Sbjct: 109 VTEILSNHPLITVVREEVTTLADKPWDNVIVAT----------GPLTSESLSQFVLDVSG 158

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               +     +P     +  M   +   R     P       I     + Q+  E  I  
Sbjct: 159 EGQLSFFDAIAPIIHYDSIDMSKAWKQSRYDKEGPGGDAAAYINCPMDKDQY--EAFIDA 216

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                K   +  E  +   +          I+  A    +   YGP     + +      
Sbjct: 217 LLAGPKAEFKDWE-HVPYFD------GCLPIEVMAERGRETLRYGPMKPVGLTNPHNPTV 269

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            +    I L  +     +    G  T L    Q    R IPGLE     R G      +I
Sbjct: 270 -KAHAIIQLRQDNALGTLYNMVGFQTKLKHGAQADVFRMIPGLENAQFARLGGLHRNTFI 328

Query: 347 -NPKELFPTLETKKI---SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            +PK L   L  K +     +  AGQ+ G  GY E+AA GL+AG  +A ++     +   
Sbjct: 329 QSPKLLDRQLRLKALFPDKSVRFAGQLTGVEGYVESAAIGLLAGRFAAAQALGTS-LPAP 387

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP---------IGMKL 453
              + +G +I+ +T   +               S +P N +  L P          G K+
Sbjct: 388 PESTALGALINHITIGHLE------------GGSFQPMNINYGLLPPLDPPKVDEHGKKI 435

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLK 479
                 R K+    ++  N ++  L 
Sbjct: 436 PLKERGRAKKRLMSLRALNDVQEWLN 461


>gi|320108819|ref|YP_004184409.1| gid protein [Terriglobus saanensis SP1PR4]
 gi|319927340|gb|ADV84415.1| gid protein [Terriglobus saanensis SP1PR4]
          Length = 448

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 164/477 (34%), Gaps = 40/477 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           + VIGGG AG EAA  AA  G    L   +               L   + ++   E  A
Sbjct: 4   IKVIGGGLAGPEAALQAANAGCQVTLYEMRPIKSTEAHQTSDFAELVCSNSLKSESENTA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +  A G   R       PA        DR  +   +   +++  N+ + + EV
Sbjct: 64  PWLLKQEMRLAGGALIREAGATAVPAGHALA--VDRIAFSERVAVLLVTHPNITIQREEV 121

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                +     +I+         ++  LT+      +  +      A     +P      
Sbjct: 122 TTLEEDSEDTLTIL---------ASGPLTSAPLTAELQRLTGADHLAFYDSIAPIVDATT 172

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +   R   GT   ++     + K E     + LI    + +K   +        
Sbjct: 173 INMDRVYMAARWDKGTADYINCP---FTKEEYDVFLDALIDSQTVEEKQWEKLD------ 223

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                +      I+ +A    D   +GP     + D   + G      + L  E L  D 
Sbjct: 224 -----YFEGCLPIEVTARRGRDTLRFGPMKPAGLTDP--KTGRWPYACVQLRQENLRADS 276

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G    +    Q + +R IPGLE    +R G      YI+ P  L  TL+ K+   +
Sbjct: 277 YNLVGFQNHIKFGDQQRILRLIPGLENATFLRYGQIHRNTYIHAPSLLTETLQLKQHPNI 336

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            +AGQ++G  GY E+ A G++AG  +A  ++        R +S  G ++  +T       
Sbjct: 337 LIAGQLSGVEGYTESIASGMLAGRYAAALAHGQTPTPAPR-ESAHGSLMHYITHAED--- 392

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMK--LGCIGERRQKRFAKYIQEYNFLRSLL 478
             M   + +     +P N    L P   +     I +++++   +  +      + L
Sbjct: 393 --MGGGKGKANK-FQPANITFDLIPPLEEELRKKIRDKKERHRLQCDRALEAWNAWL 446


>gi|84500842|ref|ZP_00999077.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
 gi|84390909|gb|EAQ03327.1| glucose-inhibited division protein A [Oceanicola batsensis
           HTCC2597]
          Length = 455

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 147/444 (33%), Gaps = 43/444 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA  G    +   +            +  +   +  R    E +A+
Sbjct: 9   IVGGGMAGSEAAWQAANAGVPVVIHEMRPQVGTFAHKTGDLAEMVCSNSFRSDDDEQNAV 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +    PA  G     DR+ +   +   + +   + V  GE+A
Sbjct: 69  GLLHWEMRQAGGLIMEMADRNALPA--GGALAVDRDRFSAGVTERLRAHPLVRVEAGEIA 126

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                         +D + I   T  LT+    + +      +  A     +P     + 
Sbjct: 127 ALP-----------EDGTWIIA-TGPLTSQGLGQAIARETGAEALAFFDAIAPIVYADSL 174

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +     + Q+  E  I      DK    + E      
Sbjct: 175 DMDVIWAQSRYDKGETEEERRAYLNCPMDKAQY--EAFIDALLAADKTEFHEGETAGYFD 232

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++ E          +   +GP     + +   +  E+    + L  +     + 
Sbjct: 233 GCLPIEVMAE-------RGRETLRHGPMKPVGLTNA-HKPDEKAYAVVQLRRDNALGTLF 284

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q +  R IPGLE     R G      ++N P  L   +  +    + 
Sbjct: 285 NIVGFQTKMKYGAQTEVFRRIPGLENARFARLGGIHRNTFLNSPTLLDDRMRLRSRPNIR 344

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+AA GL+AG  +  +    D +     ++ +G ++  +T        
Sbjct: 345 FAGQITGVEGYVESAAMGLLAGRMAVAELLGRD-LPPPPPETAMGALVHHITGGAEA--- 400

Query: 425 RMFTSRAEYRISLRPDNADNRLTP 448
                      + +P N +  L P
Sbjct: 401 ----------KTFQPMNVNFGLFP 414


>gi|225873465|ref|YP_002754924.1| gid protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792361|gb|ACO32451.1| gid protein [Acidobacterium capsulatum ATCC 51196]
          Length = 442

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 98/479 (20%), Positives = 172/479 (35%), Gaps = 58/479 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH--- 57
           VIGGG AG EAA +AA++GA   L           H+T+  G + C+ ++    +     
Sbjct: 7   VIGGGLAGPEAALMAARMGADVDLYEMRPVRQTPAHQTADFGELVCSNSLKSESENTAPW 66

Query: 58  -LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E+      + + ADAA +          PA        DRE +   +   I ++  
Sbjct: 67  LLKQEMRRAGSPLLQCADAAAV----------PAGHALA--VDREEFSRRITAAIAAEPR 114

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + V + EV   + E  +              ++  LT+      +  +   +  A     
Sbjct: 115 ITVHREEVTELDPEGPVTV-----------LASGPLTSSALSEEIARLTGQEHLAFYDSI 163

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +  M   +   R   GT   ++      ++ E     + L+    + +K   +
Sbjct: 164 SPIVDAESIDMDRVYFAARWDKGTADYINCPM---NREEYDRFYDALVSAETVKEKDWEK 220

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
                        +      I+  A    D   +GP     + D   R G+     + L 
Sbjct: 221 LD-----------YFEGCLPIEELARRGRDTLRFGPMKPVGLRDP--RTGQTPWAVVQLR 267

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            E L  D     G    L    Q + +R IPGLE    +R G      YI  P  L   L
Sbjct: 268 CENLRADSYNLVGFQNHLKYGEQARILRMIPGLENAKFLRYGQIHRNTYIQAPAVLAGRL 327

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K    +F+AGQ++G  GY E+   GL+AGI +A  +   +     R  + +G +++ +
Sbjct: 328 HFKAHPRVFVAGQLSGVEGYTESMGMGLLAGIYAAAAAMGREVAEIPR-GTALGSLVNYI 386

Query: 416 TSKGVLEPYRMFTSRAEYRISLR-PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
           T     E  R   +   + +     +    ++     +   + ER   +F  +      
Sbjct: 387 TH---AELKRFQPANITFDLLEPLEEETRRKVRDKKERHRMVCERALAKFDAWWSGLAR 442


>gi|294677498|ref|YP_003578113.1| glucose-inhibited division protein A [Rhodobacter capsulatus SB
           1003]
 gi|294476318|gb|ADE85706.1| glucose-inhibited division protein A [Rhodobacter capsulatus SB
           1003]
          Length = 445

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IG G AG EAA  AA+ G    L   +         +     +   +  R    E +A+
Sbjct: 6   IIGAGLAGSEAAWQAAQAGVPVVLHEMRPRVGTFAHRSGDFAEMVCSNSFRSDDDERNAV 65

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +    PA  G     DRE +  A+   + +   + V + E+ 
Sbjct: 66  GLLHWEMRAAGGLIMATADRHALPA--GGALAVDREAFSGAVTAALRAHPLISVAEEEIT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I             +T  LT+G     +  +   +  A     +P      +
Sbjct: 124 ELPAEGHWII------------ATGPLTSGALAESIRAVTGAESLAFFDAIAPIVHAETT 171

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R   G         I    T  Q+        +F+   +   + E     T
Sbjct: 172 DIR-CLRQSRYDKGETEEERTAYINCPMTRDQY-------EAFIDALLAAEKTEFHAGET 223

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +       +    + L  +     + 
Sbjct: 224 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNA-HDPATKAYAVVQLRRDNALGTLY 280

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE+ +  R G      ++N P  L   +  +    L 
Sbjct: 281 NIVGFQTKMKYGAQTAVFKMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLRARPNLR 340

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A        +     ++ +G +++ +T   V    
Sbjct: 341 FAGQVTGVEGYVESAAMGLLAGRMAAAGILGRS-LPPPGPETAMGALVNHITGGAVA--- 396

Query: 425 RMFTSRAEYRISLRPDNADNRLTP 448
                      + +P N +  L P
Sbjct: 397 ----------KTFQPMNVNFGLFP 410


>gi|114768818|ref|ZP_01446444.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
 gi|114549735|gb|EAU52616.1| glucose-inhibited division protein A [alpha proteobacterium
           HTCC2255]
          Length = 449

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 162/487 (33%), Gaps = 55/487 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + ++GGG AG EAA      G    +   + S          +  L   +  R    E +
Sbjct: 5   IHIVGGGMAGSEAAWQIVSAGIPVIIHEMRPSVETFAHQTHDLAELVCSNSFRSDDDESN 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  I   + +    PA  G     DRE +  ++ ++I +   + + + E
Sbjct: 65  AVGLLHWEMRSANSIIMEMGDKHALPA--GSALAVDREAFSASVTKKITNHPLVTIDRSE 122

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG-----RMGDSP 178
           +     E              I   T  LT+ +    ++     K  A       +  + 
Sbjct: 123 IHNLPPENW---------GHTIIA-TGPLTSKSLANDILENTDQKSLAFFDAIAPIVFAD 172

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTII--WDKTEKQFADERLIPFSFMTDKITNR 236
           S  +  ++M+  +D G       A L+       +D       D     F    +K T  
Sbjct: 173 SIDMSKAWMQSRYDKGETDEERTAYLNCPMDKETYDNFIDALLDSEKTEFK-DWEKDTPY 231

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
              C                I+  A    +   +GP     + +   +   +    + L 
Sbjct: 232 FDGC--------------LPIEVMAERGKETLRWGPMKPVGLTNP-HQPTIKAHAVVQLR 276

Query: 297 PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTL 355
            +     +    G  T +    Q + +  IPGLE     R G      +IN P  L   +
Sbjct: 277 RDNALGTLFNIVGFQTKMKYSEQTRVLSMIPGLENAKFARLGGIHRNTFINSPLLLDDQM 336

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K    +  AGQI G  GY E+AA GL+AG  +  +S   + I      + +G +I  +
Sbjct: 337 RLKTRPNIRFAGQITGVEGYVESAAMGLLAGRLAVAESTGKN-IKSPPNTTAMGALISHI 395

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI-QEYNFL 474
           T                   + +P N +  L P    +      R+ R+  Y  +  N  
Sbjct: 396 TGGADA-------------KTFQPMNVNFGLFPPVENVKGGRRNRKDRYKAYTDRAKNDW 442

Query: 475 RSLLKSL 481
            S L + 
Sbjct: 443 TSWLNNT 449


>gi|213583207|ref|ZP_03365033.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 165

 Score =  220 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/165 (53%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            Q  V     E + +   V Q     R   VVLT GTFL G IHI
Sbjct: 121 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHI 165


>gi|89070138|ref|ZP_01157467.1| gid protein [Oceanicola granulosus HTCC2516]
 gi|89044255|gb|EAR50401.1| gid protein [Oceanicola granulosus HTCC2516]
          Length = 454

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 151/463 (32%), Gaps = 45/463 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA  G    +   +            +  +   +  R    E +A+
Sbjct: 10  IVGGGMAGSEAAWQAASAGVRVIIHEMRPHVGTFAHKTGDLAEMVCSNSFRSDDDEQNAV 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   + +  K PA  G     DRE +   +   + +   +++   E+ 
Sbjct: 70  GLLHWEMRAAGGLLMEMADRHKLPA--GGALAVDREAFAAGVTERLRAHPLVEISGEEIT 127

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I             +T  LT+G     +      +  A     +P       
Sbjct: 128 ELPREGHWIV------------ATGPLTSGALAEAIRAETGTESLAFFDAIAPIVYADTI 175

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   ++  R   G         I    T  ++  E  I      DK    + E      
Sbjct: 176 DMSVAWEQSRYDKGETEAEQKAYINCPMTRDEY--EAFIDALLAADKAEFHEGETAGYFD 233

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 ++ E          +   +GP     + +   +  E+    + L  +     + 
Sbjct: 234 GCLPIEVMAE-------RGRETLRHGPMKPRGLTNA-HKPDEKAHAVVQLRRDNALGTLY 285

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q +  R IPGLE+ +  R G      ++N P  L   +  K    + 
Sbjct: 286 NIVGFQTKMKYGAQTEVFRMIPGLEQASFARLGGIHRNTFLNSPTLLDGEMRLKSRPNIR 345

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+A   +  +           T +  G ++  +T        
Sbjct: 346 FAGQVTGVEGYVESAAMGLLAARLAVAEMRGEALPAVPSTTAM-GALVTHITGGADA--- 401

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                      + +P N +  L P     G  G RR ++    
Sbjct: 402 ----------KTFQPMNVNFGLFPP--VDGLKGGRRGRKDRYK 432


>gi|257427966|ref|ZP_05604364.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257274807|gb|EEV06294.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 65-1322]
          Length = 351

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 146/409 (35%), Gaps = 72/409 (17%)

Query: 87  KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
           K     G     DR  +   +   + + EN+ VI  E+        II++  +       
Sbjct: 1   KARVPAGGALAVDRHDFSGYITETLKNHENITVINEEINAIPDGYTIIATGPLTT--ETL 58

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR----------- 195
              +V  TG   +  ++       A  + +  S  +   ++K  +D G            
Sbjct: 59  AQEIVDITG---KDQLYFYD---AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTED 112

Query: 196 -LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
                  A L+ +    +  EK+   E  +PF  M ++                      
Sbjct: 113 EFNRFYDAVLEAEAAPVNSFEKEKYFEGCMPFEVMAER---------------------- 150

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
                          +GP     +ED   + G+R    + L  +     +    G  T L
Sbjct: 151 ---------GRKTLLFGPMKPVGLEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHL 199

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTT 373
               Q + I+ IPGLE V+I+R G      +IN P  L    E      +  AGQ+ G  
Sbjct: 200 KWGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVE 259

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GY E+AA GLVAGIN A K      + F R ++ IG M   +             S A+ 
Sbjct: 260 GYVESAASGLVAGINLAHKILGKGEVVFPR-ETMIGSMAYYI-------------SHAKN 305

Query: 434 RISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSLLKSL 481
             + +P NA+  L P  ++      + R +  A   +  ++L +  K+L
Sbjct: 306 NKNFQPMNANFGLLP-SLETRIKDKKERYEAQAN--RALDYLENFKKTL 351


>gi|256384026|gb|ACU78596.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384858|gb|ACU79427.1| tRNA:M(5)U-54 methyltransferase [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455781|gb|ADH22016.1| tRNA:M(5)U-54 methyltransferase [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 438

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 167/486 (34%), Gaps = 51/486 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +     + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADSCKIDGDDALAVDREDFSKKLTEVIKNHPNITII 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V+  + E ++              +T  LTT      +  +   +        +P  
Sbjct: 119 EQNVSHIDDENDLT-----------LIATGPLTTNELKEDIQRLIGKQKLFFMDASAPII 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +  +      + +GR K G       K I     E++F            +++  ++ E 
Sbjct: 168 TKDSIDFNKAYYSGRHKLG-------KYICCPLNEQEF--NEFADNLINAEQVQLKEFEK 218

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I     +            A  S  +   GP    ++ D   +   +    + L  +  
Sbjct: 219 SIFFKGCQPIE-------QLAKTSKKLLLKGPMSSNNLLD---QNNHQPYAVVQLRQDDA 268

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  +TIPGL+K  I+R G   +  YIN PK L   L+  +
Sbjct: 269 KDSLYNMVGFQTNLKWPEQKRVFQTIPGLQKAKIVRYGVMHKNYYINSPKILNFKLQVMR 328

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              +F AGQI G  GY E+A+ G+ A IN     N         T + +G + + +T+  
Sbjct: 329 KKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKLKPLPNT-TILGALTNYITNSK 387

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
           +               SL+P   +  +     +     + +   F             L 
Sbjct: 388 IY--------------SLKPMKCNLGILE--QENKYQSDDKFYSFNNSKNSLEEYIKQLN 431

Query: 480 SLVLTS 485
            ++ TS
Sbjct: 432 QILDTS 437


>gi|26006758|sp|O68141|TRMFO_RHOCA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|3128379|gb|AAC16231.1| gid protein [Rhodobacter capsulatus SB 1003]
          Length = 445

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IG G AG EAA  AA+ G    L   +         +     +   +  R    E +A+
Sbjct: 6   IIGAGLAGSEAAWQAAQAGVPVVLHEMRPRVGTFAHRSGDFAEMVCSNSFRSDDDERNAV 65

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+     +    PA  G     DRE +  A+   + +   + V + E+ 
Sbjct: 66  GLLHWEMRAAGGLIMATADRHALPA--GGALAVDREAFSGAVTAALRAHPLISVAEEEIT 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E + I             +T  LT+G     +  +   +  A     +P      +
Sbjct: 124 ELPAEGHWII------------ATGPLTSGALAESIRAVTGAESLAFFDAIAPIVHAETT 171

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            ++      R   G         I    T  Q+        +F+      R+       T
Sbjct: 172 DIR-CLRQSRYDKGETEEERTAYINCPMTRDQY-------EAFIGRAARGREDRVHAGET 223

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +       +    + L  +     + 
Sbjct: 224 --AGYFDGCLPIEVMAERGRETLRHGPMKPVGLTNA-HDPATKAYAVVQLRRDNALGTLY 280

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q    + IPGLE+ +  R G      ++N P  L   +  +    L 
Sbjct: 281 NIVGFQTKMKYGAQTAVFKMIPGLEQASFARLGGIHRNTFLNSPTLLDDQMRLRARPNLR 340

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+AG  +A        +     ++ +G +++ +T   V    
Sbjct: 341 FAGQVTGVEGYVESAAMGLLAGRMAAAGILGRS-LPPPGPETAMGALVNHITGGAVA--- 396

Query: 425 RMFTSRAEYRISLRPDNADNRLTP 448
                      + +P N +  L P
Sbjct: 397 ----------KTFQPMNVNFGLFP 410


>gi|226227914|ref|YP_002762020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid
           [Gemmatimonas aurantiaca T-27]
 gi|226091105|dbj|BAH39550.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme Gid
           [Gemmatimonas aurantiaca T-27]
          Length = 461

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 161/488 (32%), Gaps = 70/488 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V ++GGG AG EAA   A+ G    L           H+T  +G + C+           
Sbjct: 16  VHIVGGGLAGSEAAWQLAERGHEVILHEMRPVRGTAAHRTERLGELVCSNTFKSTETSNA 75

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+ AL  L+   AD A +              G     DR+++   +   + + 
Sbjct: 76  HGLLKAEMRALGSLILSCADEARV------------PGGSALTVDRDIFSQGVHDRVHAH 123

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + EV        I +  +  D    R                    ++  A   
Sbjct: 124 PRITVSREEVTELPAVGIIATGPLTSDALAERIRA--------------RLGVESLAFYD 169

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGT--PARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
             +P  ++ +      F   R    T   A  +G  +    T+ ++  +  I      D+
Sbjct: 170 AIAPVVAVESIDQSIAFRASRWGKETMEGAGEEGAFLNCAFTKDEY--DAFIAALTTADQ 227

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            T  + +                     A    +   +GP     ++D   R  +R    
Sbjct: 228 FTAHEFDAVPYFEGCMPVE-------EMARRGAESLRFGPMKPIGLQDP--RSDKRPWAV 278

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E     +    G  T L    Q +  R IPGL +   +R G      Y+N P  L
Sbjct: 279 VQLRMEDRGGRMWNLVGFQTRLRIPEQARVFRMIPGLAEAEFLRYGSIHRNSYVNAPAAL 338

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
            P L  +       AGQI G  GY E++A G++AGIN +R     + +      S +G +
Sbjct: 339 SPHLALRDAPTTLFAGQITGVEGYTESSATGMLAGINLSRMLRGQEPVIPPAV-SMLGAL 397

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP--IGMKLGCIGERRQKRFAKYIQ 469
              L                      +P NA+  L     G+    + ++ +KR     +
Sbjct: 398 YRYLREADPKH--------------FQPMNANFGLLDELEGVPPKVLKDKVRKRELFAER 443

Query: 470 EYNFLRSL 477
               L + 
Sbjct: 444 ALQALHTW 451


>gi|157363547|ref|YP_001470314.1| gid protein [Thermotoga lettingae TMO]
 gi|205830344|sp|A8F516|TRMFO_THELT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|157314151|gb|ABV33250.1| gid protein [Thermotoga lettingae TMO]
          Length = 441

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 162/476 (34%), Gaps = 58/476 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--IDAL 65
           V V+G G +G E A   A  G    L   + S +  +        L   + ++   I   
Sbjct: 3   VHVVGAGLSGSEIAYQLAIRGLKVILHEMRPSKMTPVHKTSYFAELVCSNSLKSDSIKNA 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            GL+ R  +  G    +L V +  A   G     DRE +   +   I  +  +D++  E+
Sbjct: 63  SGLLKRELELFG--SLILRVARNCAVPAGKALAVDREEFSKQVTHVIR-ESGIDIVIEEL 119

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                 K  I  I               T+ +F   +       +       SP  +  +
Sbjct: 120 RYIPDSKEDIWIIAT----------GPATSDSFASWLREKVGHNM-YFFDAVSPIITADS 168

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G    L+      ++ E     E LI      + +  +  E  +  
Sbjct: 169 IDYSVVFRADRYGIGNQDYLNCPM---NEYEYDRFYEALINA----EVLPVKDFEKDLLF 221

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              +    I ++ K S         +GP     I D   R G++    + L  E L+  +
Sbjct: 222 ERCKPIEDIAKSGKRS-------LLFGPMKPTGIIDP--RTGKQPFAVVQLRKENLDETL 272

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK-ELFPTLETKKISGL 363
               G  T L    Q + IR IPGLEK  I+R G   +  YIN +  L P +  K    +
Sbjct: 273 YNIVGFQTRLKWGEQRKIIRLIPGLEKAEIVRYGVMHKNIYINSRKVLDPFMRLKNDRKI 332

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQI G  GY E+ A GL   +N  R S   + +   ++ +  G +++ +        
Sbjct: 333 FFAGQITGVEGYLESVASGLYVALNVYRISKNQEPLELPKS-TMTGCLLNYILKGT---- 387

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                              D  L P+    G +G   + R          L + L 
Sbjct: 388 -------------------DTTLQPMYANYGLMGPANKNREEVAKTALRDLENFLN 424


>gi|84686896|ref|ZP_01014780.1| gid protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84665093|gb|EAQ11573.1| gid protein [Rhodobacterales bacterium HTCC2654]
          Length = 450

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA  G    +   +            +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAANAGLDVVIHEMRPKVETFAHHTGKLAEMVCSNSFRSDDSEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A  +     +  + PA  G     DRE +   +   + +  N+ V+  E+ 
Sbjct: 67  GLLHWEMRQADSLIMAAADKHRLPA--GGALAVDREPFSQHVTDTLRALPNVTVVDEEIT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E +               +T  LT+      +         A     +P     + 
Sbjct: 125 DLPGEGH------------WLFTTGPLTSPALGEAIARETGADRLAFFDAIAPIVYAESI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         +    T+ Q+  E  I      DK    + E      
Sbjct: 173 DMDVVWAQSRYDKGETEEERKAYLNCPMTKDQY--EAFIDALLAADKTEFHEGETAGYFD 230

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
                 I+ E          +   +GP     + +   +  E+    + L  +     + 
Sbjct: 231 GCLPIEIMAE-------RGRETLRHGPMKPVGLTNA-HKPDEKAYAVVQLRRDNALGTLF 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q +  + IPGLE  +  R G      ++N P  L   +  +    + 
Sbjct: 283 NMVGFQTKMKYGAQTEVFKMIPGLENASFARLGGIHRNTFMNSPTLLDEQMRLRTRPNVR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQ+ G  GY E+AA GL+A   +  +           T +  G ++  +T        
Sbjct: 343 FAGQVTGVEGYVESAAMGLLAARFAIAELAGASLPPVPNTTAM-GALVTHITGGAEA--- 398

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                      + +P N +  L P     G    R  +  A   +  +  R+ L
Sbjct: 399 ----------KTFQPMNVNFGLFPPVDLKGGRKNRPARYKAYTDRAKDDWRNWL 442


>gi|260426874|ref|ZP_05780853.1| tRNA:M(5)U-54 methyltransferase [Citreicella sp. SE45]
 gi|260421366|gb|EEX14617.1| tRNA:M(5)U-54 methyltransferase [Citreicella sp. SE45]
          Length = 450

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 155/463 (33%), Gaps = 45/463 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           ++GGG AG EAA  AA+ G    +   +            +  +   +  R    E +A+
Sbjct: 7   IVGGGMAGSEAAWQAAEAGVPVVIHEMRPKVETFAHRTGNLAEMVCSNSFRSDDHEQNAV 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+  R     + PA  G     DR+ +  ++   + +  N+ +   E+ 
Sbjct: 67  GLLHWEMRHAGGLVMREAAAHRLPA--GGALAVDRDPFSQSVTDALRAHPNVSISGEEIT 124

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               + + I             +T  LT+    R +      +  A     +P     + 
Sbjct: 125 ALPEDGHWII------------ATGPLTSDALGRAIAAETGAEALAFFDAIAPIVYAESI 172

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
            M   +   R   G         I    T       +    +F+   +   + E     T
Sbjct: 173 DMDVAWLQSRYDKGETEEERKAYINCPMT-------KPEYEAFIDALLAADKAEFHEGET 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
               +      I+  A    +   +GP     + +   +  E+    + L  +     + 
Sbjct: 226 --AGYFDGCLPIEVMAERGRETLRHGPMKPIGLTNS-HKPEEKAYAVVQLRRDNALGTLY 282

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q +  R IPGL+  +  R G      ++N P  L   +  +    + 
Sbjct: 283 NIVGFQTKMKYGAQTEVFRMIPGLQNASFARLGGIHRNTFLNSPTLLDNQMRLRSKPHIR 342

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+ A GL AG  +A +          +  ++ G +I  +T        
Sbjct: 343 FAGQITGVEGYVESCAMGLAAGRMAAAEILGRTLPPIPQDTAH-GALIHHITGG------ 395

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                 AE R + +P N +  L       G  G RR ++    
Sbjct: 396 ------AEAR-TFQPMNVNFGLFRP--VDGLKGGRRGRKDRYK 429


>gi|19704405|ref|NP_603967.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|26006763|sp|Q8REM9|TRMFO_FUSNN RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|19714663|gb|AAL95266.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 434

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 174/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYFSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLMKEELRILGSLLIEVADK----------NRVPAGQALA--VDRDGFSEEVTKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+++I+ E   F  +K +I             ++  LT+    + +  I   +     
Sbjct: 112 TKNIEIIEEEFTEFPNDKIVII------------ASGPLTSDKLFQKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESIDMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   +  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--KTEKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            + L  +     +    G  T L    Q +    IPGLE    IR G      +IN  +L
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKL 321

Query: 352 FPTLETKKIS-GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
                  K    ++ AGQI G  GY  A A G+   +N A +    +        S IG 
Sbjct: 322 LDKTLKLKNKDNIYFAGQITGGEGYVTAIATGMYVAMNVANRLENKEEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRKL 419

Query: 471 YNFLRSLLKS 480
                  LK+
Sbjct: 420 SERAIEYLKN 429


>gi|326387733|ref|ZP_08209339.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207779|gb|EGD58590.1| tRNA (uracil-5-)-methyltransferase Gid [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 439

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/482 (20%), Positives = 164/482 (34%), Gaps = 70/482 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL----------ITHKTSTIGSMSCNPAIGG-- 52
           SY V +IGGG AG EAA   A+ G    L            H+ + +  + C+ +     
Sbjct: 2   SYQVHIIGGGMAGSEAAWQLARRGVRVRLSEMRGGGDSTPAHQGNGLAELVCSNSFRSDD 61

Query: 53  ---LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                 G L  E+   D L+   A+ A +              G     DR+++  A++ 
Sbjct: 62  DEKNAVGLLHHEMRRCDSLIMAAAERARV------------PAGSALAVDRDVFSSAVEE 109

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            + S   L+V++  V    +E  +I             +T  LT  +    +        
Sbjct: 110 ALASLPTLEVVRERVDSIPSEGQVIV------------ATGPLTAPSLAASIGSATGADS 157

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A     +P     +  M   +   R   G    ++              DE +     +
Sbjct: 158 LAFFDAIAPIVHHDSIDMDKCWKASRWDKGEADYINCPMNR---------DEYVAFRQGL 208

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
            D       E     T    +      I+  A    D   +GP     +++   R G   
Sbjct: 209 LDGDKTEFRE-WEANT---PYFEGCMPIEVMASRGEDTLRFGPMKPVGLDNP--RTGRWP 262

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-P 348
              + L  +     +    G  T L    Q +  RTIPGLE+    R G      +IN P
Sbjct: 263 YAVVQLRQDNKLGTLWNMVGFQTKLKHAEQVRLFRTIPGLEQAEFARLGGLHRNTFINSP 322

Query: 349 KELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
             L   L  ++   +  AGQI G  GY E+AA G++AG+ +A +    D        + +
Sbjct: 323 VVLDRQLRLRRDDRIRFAGQITGCEGYVESAAIGMLAGLMTAAQFAGKD-WTPPPRTTAL 381

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYI 468
           G ++  +T     E Y             +P N +  L P  +      + R++ +    
Sbjct: 382 GALLAHVTGDAEAETY-------------QPMNVNFGLFP-PVDSSVKKKVRKEAYTARG 427

Query: 469 QE 470
           + 
Sbjct: 428 KA 429


>gi|291280178|ref|YP_003497013.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
 gi|290754880|dbj|BAI81257.1| glucose inhibited division protein A [Deferribacter desulfuricans
           SSM1]
          Length = 433

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 140/417 (33%), Gaps = 35/417 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V +IGGG AG E A   A+ G    L   +   +        +G L   + ++      A
Sbjct: 5   VTIIGGGLAGSELAFQLAESGIKVVLYEMRPKKMTEAHETGFLGELLCSNSLKAESLDTA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +     +  +V    + PA  G     DRE +   +   + + EN+ VI+ EV
Sbjct: 65  SGLLKAEMEMLNSLIIKVAKKNRVPA--GNALAVDREKFAKEITEILENHENIKVIREEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                ++ ++ +     +  +    +         G ++          + D+ S     
Sbjct: 123 KSIPKDRPLVVA-----SGPLTSHNLSKELKNLFGGELYFYDAIS---PIVDAESIDYSK 174

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F K  ++ G          +   +    TE++F  +R        +K+  R  E G   
Sbjct: 175 CFFKSRYNKG----------ESDYLNCPLTEEEF--DRFYDALMKAEKVEFRDFEKGAVF 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                           A        +GP     +E    + G++    + L  E +    
Sbjct: 223 EGCMPIE-------ELAARGKQTLLFGPMRPVGLEHP--KTGKKYYAVVQLRKEDVEGRA 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
               G  T +    Q +  R IPGLE    +R G      Y+   +   +    K   LF
Sbjct: 274 YNIVGFQTKMKIGAQKEVFRLIPGLENAEFLRYGSIHRNTYVRACDYLDSFFRYKDDLLF 333

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            AGQI G  GY E+AA  L+         N      F  T + +G +   +++    
Sbjct: 334 FAGQITGVEGYIESAATSLIIAKFLVNYFNGKKIKPFPETTA-LGALSRYVSTHKKD 389


>gi|299134925|ref|ZP_07028116.1| gid protein [Afipia sp. 1NLS2]
 gi|298589902|gb|EFI50106.1| gid protein [Afipia sp. 1NLS2]
          Length = 477

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 148/450 (32%), Gaps = 42/450 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           + VIGGG AG EAA   A  G    L   +           +   L   +  R  DA   
Sbjct: 11  IHVIGGGLAGSEAAWQIAARGCRVVLHEMRPIRTTEAHRTESFAELVCSNSFRSDDAANN 70

Query: 65  -LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L   +     +     +  + PA  G     DRE +  A+   +     +++ + E
Sbjct: 71  AVGLLHAELRKLNSLIMASADAHQVPA--GGALAVDREGFSAAVSAALSGHPLIEIRREE 128

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG    +     +              LT+      V  +      A     +P     
Sbjct: 129 IAGLPPAEWSNVVVAT----------GPLTSPALADAVRALSGEDSLAFFDAIAPIVHRD 178

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R     P       I    + +Q+  E  +      +K   ++ E    
Sbjct: 179 SIDMSKAWFQSRYDKVGPGGNGADYINCPLSREQY--EAFVAALIAGEKTDFKEWE---- 232

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEG 299
                T        I+  A    +   +GP     +    +  V    +    + L  + 
Sbjct: 233 ---SNTPYFDGCLPIEVMAERGPETLRHGPMKPVGLTNAHEPTV----KPYAIVQLRQDN 285

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETK 358
               +    G  T L    Q   +R IPGLE+    R G      ++N PK L   L  +
Sbjct: 286 KLGTLYNIVGFQTKLKYGAQTNVLRMIPGLEQAEFARLGGLHRNTFLNSPKLLDARLRLR 345

Query: 359 KISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
               L  AGQ+ G  GY E+A  GL+AG+ +A ++          T   +G +++ +T  
Sbjct: 346 AQPRLRFAGQMTGCEGYVESAGIGLLAGLFAAHEALTRPIAPPPPTT-ALGALLNHITGG 404

Query: 419 GVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
            +        +      S +P N +  L P
Sbjct: 405 HIE-------AIDAGPRSFQPMNINFGLFP 427


>gi|305431782|ref|ZP_07400949.1| glucose inhibited division protein A [Campylobacter coli JV20]
 gi|304444866|gb|EFM37512.1| glucose inhibited division protein A [Campylobacter coli JV20]
          Length = 240

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 3/239 (1%)

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           +AG+N+    +  +     R ++YIGV+IDDL  KG  EPYRMFTSRAE+R+ LR +NA 
Sbjct: 1   MAGVNAVLALDNKEPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAI 60

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSST---SISFKQDGK 500
            RL   G +LG + +   +              LL     T    ++    SI  ++   
Sbjct: 61  VRLGKYGKELGLLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITS 120

Query: 501 TRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEE 560
                + ++   F I+ L  +           +  +  E+ Y  Y   Q  + +++K   
Sbjct: 121 IVNLQKIVARSSFDIEKLKKLNTIFENMDEYSLREILNEAKYYHYIAMQKSQVEKMKNLI 180

Query: 561 KRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619
              IP DFD++S+  LSNE+ EKL   KP  L  AS+I G+TPAAL++L IYIK    K
Sbjct: 181 DMKIPSDFDFTSVSGLSNEVVEKLQKHKPLTLFAASEISGITPAALDILQIYIKMQKKK 239


>gi|327398970|ref|YP_004339839.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Hippea maritima DSM 10411]
 gi|327181599|gb|AEA33780.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Hippea maritima DSM 10411]
          Length = 436

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 139/426 (32%), Gaps = 58/426 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----G 54
           + ++G G AG EAA   A  G    L   K            +  + C+ + G       
Sbjct: 7   INIVGAGLAGVEAAFAIANRGFDVNLFEMKPYTFSEVHRSEKLAEIVCSNSFGNKKLSTA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E++ L   + + A    +              G     DR  +   +   I   
Sbjct: 67  SGVLKKEMEILGSTLLKAAYEVKV------------EAGGALAVDRVKFSDLVTSWIEEH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +I+ +V   N     +         +   S +      ++RG +      I    +
Sbjct: 115 PRIHLIREKVEKLNDSDIWVV----ACGPLCDKSLLEFLQEKYIRGDMLYFFDAIA--PI 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             + +           F   R         D        TE+ +         F  + I 
Sbjct: 169 VYADTVDYSK-----GFWGSRYSD------DKDYFNCVLTEEDY-------KLFYKELIN 210

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +++E    R   + +      I+  A        +GP     ++ +    G++    + 
Sbjct: 211 AQKVE---FREFEKNYFEACLPIEEIAERGEQTLLFGPLKPVGLKYE----GKQPFAVVQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  E     ++   G  T L    Q +  R IP L      + G      +I+ P  L  
Sbjct: 264 LRKENKEGTLLSMVGFQTKLTYPEQKRVFRLIPALRNAEFAKLGSLHRNTFIDSPHLLNE 323

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L+ K    +F AGQI G  GY  +A  G+  G+N A K  K   +   + ++  G +I 
Sbjct: 324 FLQLKSGENIFFAGQITGVEGYMASAVSGIYVGMNIALKIKKGKMLTPPK-NTMFGGLIY 382

Query: 414 DLTSKG 419
            +T K 
Sbjct: 383 YITIKE 388


>gi|254462428|ref|ZP_05075844.1| tRNA:m(5)U-54 methyltransferase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679017|gb|EDZ43504.1| tRNA:m(5)U-54 methyltransferase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 149/428 (34%), Gaps = 38/428 (8%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA LG +  +   +         +  +  +   +  R    E +A+
Sbjct: 10  IIGGGLAGSEAAWQAANLGVNVVIHEMRPKVETFAHKSGDLAEMVCSNSFRSDDHEQNAV 69

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+   +    + PA  G     DRE +   +  +I +   + V   E+ 
Sbjct: 70  GLLHWEMRQAGGLIMEMAGEHRLPA--GGALAVDREAFAAGVTEKINNHNLITVDYEEIT 127

Query: 126 GFNTEKNII--SSIVMQDN-SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
              +  + I  +  +   +      +        F   +            +  + S  +
Sbjct: 128 ELPSSGHWIIATGPLTSSHLGESIAAETGQDALAFFDAI----------APIIYADSIDM 177

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             ++M+  +D G  +    A L+               ++     F+   +T  + E   
Sbjct: 178 SKAWMQSRYDKGETEEERTAYLNCPM------------DKEQYEGFINALLTADKAEFHE 225

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLN 301
             T    +      I+  A    +   +GP     + +      + +    + L  +   
Sbjct: 226 GET--AKYFDGCLPIEVMAERGRETLRFGPMKPVGLTNP--HQPDVKAYAVVQLRRDNAL 281

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T +    Q    ++IPGLE  +  R G      ++N P  L   +  K  
Sbjct: 282 GTLYNIVGFQTKMRYGAQADVFKSIPGLENASFARLGGIHRNTFLNSPTLLDSQMRLKSK 341

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +  AGQI G  GY E+A+ GL+AG  +A +          + D+  G ++  +T    
Sbjct: 342 PHIRFAGQITGVEGYVESASMGLLAGRLAAAEIKGTPLSELPQ-DTATGALVHHITGGAE 400

Query: 421 LEPYRMFT 428
            + ++   
Sbjct: 401 AKTFQPMN 408


>gi|269792954|ref|YP_003317858.1| gid protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100589|gb|ACZ19576.1| gid protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 444

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/481 (19%), Positives = 157/481 (32%), Gaps = 53/481 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---REI 62
           +DV VIGGG AG EAA   A++G S  L   +            +G L   + +   +E 
Sbjct: 3   FDVEVIGGGLAGVEAAFRLARMGFSVGLYEMRPERRSPAHRTHLLGELVCSNSLGADQET 62

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                L   +           +  + PA R      DRE +   +   + S  N+ V++ 
Sbjct: 63  SPAGILKAELRRLGSPVMASADRNRVPAGRALA--VDREGFARDLTDMVSSLPNVTVVRR 120

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           EV    T   I+++  + +  M             LR V      +        SP  ++
Sbjct: 121 EVTSIPTGPCILATGPLTEGEMAEA----------LRAVAGGEDGRFLYFYDAASPIVTI 170

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
            +  M   +   R   G         +    T +++        +F    ++ RQ     
Sbjct: 171 DSVDMSRAYRGSRYGQGE------DYVNCPLTREEY-------LAFWEALVSARQAPRHQ 217

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                         ++  A    D   +GP     +     R        + L  +    
Sbjct: 218 -FEEPRFFE-GCLPVEEIARRGVDTLRFGPMRPVGLPGPDGR---EPYAVVQLRQDDREG 272

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET--KK 359
            +    G  T L    Q +  R IP L     +R G      Y+  PK L   L      
Sbjct: 273 RLYNLVGFQTNLLWGEQERVFRMIPALRDAEFVRKGVMHRNLYVCAPKVLDGYLRPLGAH 332

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              LFLAGQI G  GY E+AA GL A +        L+       ++ +G ++  L    
Sbjct: 333 RRDLFLAGQITGVEGYLESAAMGLCAAMFMGCVLKGLELPHLPP-ETALGSLLRHLRE-- 389

Query: 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK 479
                    +R E     +P N +  + P   +       R  R+  + +    L + L+
Sbjct: 390 ---------ARPEG---FQPMNVNLGIFPPLEERIRDRRERCARY--FRRALEALEAFLR 435

Query: 480 S 480
            
Sbjct: 436 E 436


>gi|58257970|gb|AAW69380.1| glucose-inhibited division protein [Hydrogenobacter
           hydrogenophilus]
          Length = 156

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/155 (54%), Positives = 106/155 (68%), Gaps = 7/155 (4%)

Query: 197 KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-------NRQIECGITRTNLET 249
           KTGTPARLD +TI +   E    DE    FSF TD +          Q+ C IT T  +T
Sbjct: 1   KTGTPARLDKRTIDFSALEVAPGDEPPPKFSFWTDPVGTYWFSKGKPQVNCWITYTTPKT 60

Query: 250 HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG 309
           H II +N+  +A+Y G IK  GPRYCPSIEDK+V+F ++  HQIFLEPEG +T  +YPNG
Sbjct: 61  HEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKVVKFPDKERHQIFLEPEGWDTIEIYPNG 120

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           +ST+LPEEIQ +  R+IPGLEKV +IRP +AIEY+
Sbjct: 121 LSTSLPEEIQWELYRSIPGLEKVELIRPAHAIEYE 155


>gi|317050677|ref|YP_004111793.1| gid protein [Desulfurispirillum indicum S5]
 gi|316945761|gb|ADU65237.1| gid protein [Desulfurispirillum indicum S5]
          Length = 438

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 158/476 (33%), Gaps = 54/476 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           ++GGG AG EAA + A  G +  L   +   +     +     +   + +R      G  
Sbjct: 5   IVGGGLAGSEAALLLADHGVNVTLFEMRPHIMTPAHTSGDFCEMLCSNSLRGDSEESGPG 64

Query: 70  GRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA--G 126
               +        L   +      G     DR      + R I +   + V++ E +   
Sbjct: 65  ILKRELLQANSPFLLAARQFRVPAGGAFAVDRAALAAHITRLIENHPQIRVVREEYSHLD 124

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           F+ E+ +I +        +    +  + G            +        +P        
Sbjct: 125 FSPERPLIVAA-----GPLASQALCNSMGKLFG--------QSLYFYDAIAPIVDGDTVN 171

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           ++  F   R   G     D   +    +E+Q+  +R         ++  R  E  I    
Sbjct: 172 LEIAFRAARYDKG-----DADYLNCPMSEEQY--QRFYHELISAQRVKPRDFEKEIHFEG 224

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
                         A    +   +GP     +   +   GER    + L  E LN +   
Sbjct: 225 CMPIE-------EMADRGQETLCFGPMKPVGLPHPV--TGERFHAVVQLRRESLNDNAWN 275

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L +  Q +  R IPGLE  N +R G      YIN P+ L      K   GL+L
Sbjct: 276 LVGFQTKLIQSEQKRVFRLIPGLEAANFLRLGSMHRNTYINGPRFLEADYRVKDHPGLWL 335

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+ A G VA ++   +    +      T +  G +   +T+        
Sbjct: 336 AGQITGVEGYIESVASGHVAALSVLHQLRAQEFSAPPATTAM-GALGCHVTTPS------ 388

Query: 426 MFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
                     + +P N +  L  PI  +      +++++     +     RS L+ 
Sbjct: 389 ---------ANFQPSNINFGLFAPIAERHR----KKERKALYSRRAEEEFRSWLQR 431


>gi|262197812|ref|YP_003269021.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-meth
           yltransferase(FADH(2)-oxidizing) [Haliangium ochraceum
           DSM 14365]
 gi|262081159|gb|ACY17128.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-meth
           yltransferase(FADH(2)-oxidizing) [Haliangium ochraceum
           DSM 14365]
          Length = 487

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/467 (20%), Positives = 159/467 (34%), Gaps = 52/467 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AGCEAA   A+ G   +L+  K   +      P +  L   + +R  +   
Sbjct: 13  DVTVIGGGLAGCEAAWQLAERGFFVSLVEMKPHLMSPAHQTPLLCELVCSNSLRSNEPST 72

Query: 67  GLMGRVADAAGIQFRVL---NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           G      +       VL   +  + PA  G     +R  +  A+   +     + + +  
Sbjct: 73  GPGLLKRELRLAGSMVLACADEHRVPA--GSALAVERFGFGRAVTTRLALHPRIRLERRA 130

Query: 124 VAGFNTEKNIISSIVMQDNSM---------------------IRCSTVVLTTGTFLRGVI 162
           +        I+++  +    +                     I  +  +    +F     
Sbjct: 131 LDALPEGPTILATGPLTGGKLAETIRSLTGGDRLYFYDAIAPIVSAESISPEHSFRASRW 190

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
                K+ AG  GD   ++  +S    +       TG  A  +G  I      +Q+  E 
Sbjct: 191 DKHGPKLTAGAPGDRA-DAKDDSVQSSEDGASGCSTGAEAGAEGDYINCPLDREQY--EA 247

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +       K++ R  E          +      I+  A    ++  +GP     + D  
Sbjct: 248 FVREVLAARKVSPRSFE-------EPRYFEGCLPIEVLASRGPEVLRHGPMRPVGLTDP- 299

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
            R G      + L PE          G  T L    Q +  R IPGL +   +R G    
Sbjct: 300 -RTGRWPYAVVQLRPENRYLSAYNLVGFQTRLAYPEQQRIFRMIPGLGEAEFLRFGSIHR 358

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             YI+ P +L P LE +    + +AG + G  GY E+ A GL+A    A +     C   
Sbjct: 359 NTYIDAPTQLGPELELRARPDVRVAGLLTGVEGYIESCAMGLLAAWFMAARLRGQACPPP 418

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
             T  + G+             Y+  T+  +   S  P N +  L P
Sbjct: 419 PPTTGFGGL-------------YQHITASRDAGHSYAPTNVNFGLMP 452


>gi|229087970|ref|ZP_04220077.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
 gi|228695339|gb|EEL48217.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
           [Bacillus cereus Rock3-44]
          Length = 191

 Score =  217 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 437 LRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS-----KNLSST 491
           +R DNAD RLT IG ++G I + R +RF    +     ++ L+ L++       + + S 
Sbjct: 1   MRHDNADLRLTEIGHEIGLIPDERYERFTMKKETVEQEKARLEGLIIKPRPEVQELIRSI 60

Query: 492 SISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
             S  +DG    A + L   + + +++  + P   + +  + E+++I+  Y  Y  + + 
Sbjct: 61  GGSELKDGIR--ASDLLRRTEVTYEHIRLLVPSEVEINDEIAEQVEIQVKYEGYIEKSLQ 118

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
           +   +K  E + IP D DY ++  +++E ++KL  ++P ++ QAS+I G+ PA +++LL+
Sbjct: 119 QVDRMKKMENKKIPVDIDYDAISGIASEARQKLKDVRPLSMGQASRISGVNPADISILLV 178

Query: 612 YIKKNTV 618
           YI++  +
Sbjct: 179 YIEQGKI 185


>gi|293596526|ref|ZP_06684243.1| gid protein [Listeria monocytogenes J2818]
 gi|293589912|gb|EFF98246.1| gid protein [Listeria monocytogenes J2818]
          Length = 363

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/419 (20%), Positives = 145/419 (34%), Gaps = 58/419 (13%)

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  LD ++   AD            K     G     DR  +   +  ++ +   + V  
Sbjct: 1   MRMLDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNHPLVTVHT 48

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV        II             +T  LT+      +  +   +        +P   
Sbjct: 49  EEVTTIPEGPTII-------------ATGPLTSPALADEIKQLTGEEYLYFYDAAAPIIE 95

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +  M   +   R   G  A L+       + E     E L+      +    ++ E  
Sbjct: 96  KDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAALKEFEKE 148

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           +         ++       A        +GP     +ED   + G+R    + L  +   
Sbjct: 149 VFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQLRQDDAA 199

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  
Sbjct: 200 GTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTR 259

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + LF AGQ+ G  GY E+AA GL AGIN+A    + + + F  T++ IG +   +T    
Sbjct: 260 NDLFFAGQMTGVEGYVESAASGLAAGINAANFVQEKELVVFP-TETAIGSLAHYIT---- 314

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                     +  + S +P N +  L P +  K+    ER +K   + ++    +   L
Sbjct: 315 ----------SASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALKAIKKVAEEL 363


>gi|331703493|ref|YP_004400180.1| methylene tetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802048|emb|CBW54202.1| Methylene tetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 438

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 168/468 (35%), Gaps = 44/468 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNNIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +     + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADSCKIDGDDALAVDREDFSKKLTDVIKNHPNITII 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           +  V+  + E ++              +T  LTT      +  +   +        +P  
Sbjct: 119 EKNVSHIDDENDLT-----------LIATGPLTTNELKEDIQRLIGKQKLFFMDASAPII 167

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           +  +      + +GR K G       K I     E++F   +        +++  ++ E 
Sbjct: 168 TKDSIDFNKVYYSGRHKQG-------KYICCPLNEQEF--NKFADNLINAEQVQLKEFEK 218

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
            I     +            A  S  +   GP    ++ D   +   +    + L  +  
Sbjct: 219 SIFFKGCQPIE-------QLAKTSKKLLLKGPMSSNNLLD---QNNHQPYAVVQLRQDDA 268

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK 359
              +    G  T L    Q +  +TIPGL+K  I+R G   +  YIN PK L   L+  +
Sbjct: 269 KDSLYNMVGFQTNLKWPEQKRVFQTIPGLQKAKIVRYGVMHKNYYINSPKILNFKLQVMR 328

Query: 360 ISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              +F AGQI G  GY E+A+ G+ A IN     N         T + +G + + +T+  
Sbjct: 329 KKNVFFAGQITGVEGYIESASSGIWAAINILAFINNKKIKPLPNT-TILGALTNYITNSK 387

Query: 420 V--LEPYRMFTSRAEYRISLRPD-------NADNRLTPIGMKLGCIGE 458
           +  L+P +      E     + D       N+ N L     +L  I +
Sbjct: 388 IYSLKPMKCNLGILEQENKYQSDDKFYSFNNSKNSLEEYIKQLNLILD 435


>gi|299139068|ref|ZP_07032244.1| gid protein [Acidobacterium sp. MP5ACTX8]
 gi|298598748|gb|EFI54910.1| gid protein [Acidobacterium sp. MP5ACTX8]
          Length = 453

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 171/488 (35%), Gaps = 57/488 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH- 57
           + +IGGG AG EAA  AA  G    L           H+TS    + C+ ++    +   
Sbjct: 4   IHIIGGGLAGPEAALQAANAGCDVTLSEMRPVRSTEAHQTSDFAELVCSNSLKSESENTA 63

Query: 58  ---LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
              L +E+      + + ADA+ +          PA        DR  +   +   I   
Sbjct: 64  PWLLKQEMRRAGSFLLQAADASAV----------PAGHALA--VDRTEFSRRVAELIEQH 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V + E+   +       +I+         ++  LT+      +  +   +  A   
Sbjct: 112 PRITVRREEITHLDENNADTITIL---------ASGPLTSSPLAAELQRLTGAEHLAFYD 162

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             SP        M   +   R   GT   ++     + K E +   + L     +  K  
Sbjct: 163 SISPIVDASTIDMDKVYFAARWDKGTADYINCP---FTKEEYEAFMDALATAEKIEQKAW 219

Query: 235 NRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +    G      E  +       I+ +A    D   +GP     + +   + G      
Sbjct: 220 EQLPTDGSVTAAPEKLQYFEGCLPIEETARRGRDTLRFGPMKPAGLTNP--KTGRWPYAA 277

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E L  D     G   +L    Q + +R IPGLE    +R G      Y++ P  L
Sbjct: 278 VQLRQENLRADSYNLVGFQNSLKYGEQARVLRMIPGLEHATFLRYGQIHRNTYLHAPSLL 337

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             TL+ K   G+ +AGQ++G  GY E+ A GL+AG  +A  +         R  +  G +
Sbjct: 338 TETLQLKAHPGILIAGQLSGIEGYTESIASGLLAGRYAAALARGEQPEPAPRLTA-NGSL 396

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG-CIGERRQKRFAKYIQE 470
              +T     E  +   +   + +          L P+  +L   I +++++   +  + 
Sbjct: 397 SYYITH---AEHKKFQPANITFDL----------LPPLEEELRKKIRDKKERHRIQCERA 443

Query: 471 YNFLRSLL 478
                + L
Sbjct: 444 LEAWDTWL 451


>gi|291333886|gb|ADD93567.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C293]
          Length = 225

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 99/203 (48%), Positives = 129/203 (63%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           ++G  T LITHK  TIG MSCNPAIGG+GK HLV+EIDA DG+M R AD A I  +VLN 
Sbjct: 23  RIGVKTILITHKFETIGQMSCNPAIGGVGKSHLVKEIDAADGIMARCADRAAIHLKVLNS 82

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
            KGPAVR  R QADRELY+ ++Q+E+ S ENL++++GEV     + N I S+ + ++ ++
Sbjct: 83  SKGPAVRATRAQADRELYKKSVQKELKSLENLEIVEGEVTDLGIQNNQIGSVTVGESKIL 142

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           +   V+LTTGTFL G +  G      GR GD+ S  L       DF  GRLKTGTP R+ 
Sbjct: 143 KAQKVILTTGTFLNGKLFTGMDNNEGGRAGDNSSKKLAEKLRNIDFSVGRLKTGTPPRIH 202

Query: 206 GKTIIWDKTEKQFADERLIPFSF 228
             +I W+  E+Q  D      SF
Sbjct: 203 KDSINWEILEEQKGDFPRPTISF 225


>gi|254486641|ref|ZP_05099846.1| tRNA:m(5)U-54 methyltransferase [Roseobacter sp. GAI101]
 gi|214043510|gb|EEB84148.1| tRNA:m(5)U-54 methyltransferase [Roseobacter sp. GAI101]
          Length = 460

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 158/467 (33%), Gaps = 53/467 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDAL 65
           +IGGG AG EAA  AA  G    L   +            +G +   +  R    E +A+
Sbjct: 17  IIGGGMAGSEAAWQAANAGIQVVLHEMRPKVGTFAHQTGFLGEMVCSNSFRSDDSEQNAV 76

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L   +  A G+        + PA  G     DR+ +  ++   +++  N+ V  GE+ 
Sbjct: 77  GLLHWEMRAANGLIMATAEKHRLPA--GGALAVDRDPFAESVTAALMAHPNVTVEYGEIT 134

Query: 126 GFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               E   II++  +   ++     +   TG                  +    S  +  
Sbjct: 135 ELPREGHWIIATGPLTSGTL--AQAIAAETGAEALAFFD------AIAPIIYHESIDMTK 186

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           ++M+  +D G  +    A L+      DK       E  I      DK   ++ E     
Sbjct: 187 AWMQSRYDKGDTEEERTAYLNCPM---DKATY----EAFIDALLSADKTEFKEGETAGYF 239

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE---DKIVRFGERNGHQIFLEPEGLN 301
                  ++ E          +   +GP     +    D       +    + L  +   
Sbjct: 240 DGCLPIEVMAE-------RGRETLRFGPMKPVGLTNANDPE----NKPYAVVQLRRDNKL 288

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKI 360
             +    G  T +    Q + +R IPGLE  +  R G      ++N P  L   +  +  
Sbjct: 289 GTLYNIVGFQTKMKYGAQTEVLRMIPGLENASFARLGGIHRNTFLNSPTLLDDQMRLRSQ 348

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
             +  AGQI G  GY E+AA GL+AG  +  +    +        +  G +I  +T    
Sbjct: 349 PNIRFAGQITGVEGYVESAAMGLLAGRLAVAEIRG-EAATPPPPTTATGALITHITGGAE 407

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                          + +P N +  L P  ++ G    RR ++    
Sbjct: 408 A-------------KTFQPMNVNFGLFP-PVE-GLKSGRRGRKDRYK 439


>gi|153005551|ref|YP_001379876.1| tRNA (uracil-5-)-methyltransferase Gid [Anaeromyxobacter sp.
           Fw109-5]
 gi|205830306|sp|A7HDU6|TRMFO_ANADF RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|152029124|gb|ABS26892.1| gid protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 151/476 (31%), Gaps = 57/476 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V V+GGG AG EAA   A+ G    L+  K            +  L   + +R  +   A
Sbjct: 6   VTVVGGGLAGSEAAWRLAQGGVEVELVEMKPGRRSPAHVLDGLAELVCSNSLRSDNPHNA 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           +  L   +     +     +  + PA  G     DRE +   +   +     + V Q E+
Sbjct: 66  VGLLHEELRRLGSLVLSAADATRVPA--GDALAVDRERFSALVTGRLRGHPLVRVRQEEL 123

Query: 125 AGFNTEKN---IISSIVMQDNSMIRCSTVVLTTGTFLRGV---IHIGKLKIPAGRMGDSP 178
                      + +  +  D      + +      F   +   +    + +         
Sbjct: 124 LRLPEGPGLTLVATGPLTGDALAADVAALAGGRLHFYDAIAPIVAADSIDMSIAYARSRY 183

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                + ++   FD G+ +    A L G+ +     E+    E  +P   M ++      
Sbjct: 184 GKGSGDDYLNLPFDEGQYRAFVGALLAGEKVAAHDFEEPRYFEGCLPIEVMAER------ 237

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
                                      D+ +YGP     +ED   R G R    + L  E
Sbjct: 238 -------------------------GADVLAYGPMKPVGLEDP--RTGRRPFAVVQLRRE 270

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
            +        G  T L    Q + +R  +PGL     +R G      ++  P+ L P L 
Sbjct: 271 DVAGTAYNLVGFQTRLTWTEQRRILREYVPGLAGAEFVRLGQIHRNTFLEAPRVLAPDLS 330

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            ++   LF AGQI G  GY E+AA G +A      +             + +G +   LT
Sbjct: 331 ARERPHLFFAGQITGVEGYVESAACGHLAARAMLDRLAGR-PFLPPPAATALGALHRHLT 389

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYN 472
            +     Y    +   + +            P+  +      R+     +  +E  
Sbjct: 390 GEAHPPGYDYQPTNVVFAL----------FPPLTGRHRGKAARKDAHAERARKEIA 435


>gi|94984591|ref|YP_603955.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus geothermalis
           DSM 11300]
 gi|122986705|sp|Q1J148|TRMFO_DEIGD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|94554872|gb|ABF44786.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Deinococcus geothermalis DSM 11300]
          Length = 458

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 151/452 (33%), Gaps = 51/452 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M      + VIG G AG EAA  AA+LG    L   +   +           L     + 
Sbjct: 1   MSTEDAAITVIGAGLAGSEAALAAARLGVRVRLHEMRPHKMTPAHRTGNFAELVCSTSLG 60

Query: 61  ---EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
              E+ A   L   +    G      +  + PA  G     DR+ +   + + + +    
Sbjct: 61  GEGEMQAKGLLQAELRSVGGAIVGAADSSRVPA--GNALAVDRDEFSARVTQAVRAHP-- 116

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +I+            I  ++         +T  LT+      +      +  +     +
Sbjct: 117 -LIEVVEGEVEAVPEGI-GVI---------ATGPLTSDALAADLARRTGSERLSFYDAAA 165

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P  +  +  M   +  GR             I    T++    E L  F  +     +  
Sbjct: 166 PVIAFESINMDVAWRAGRYDQ------SADYINCPFTKE----EYLRFFEALEQARRHTP 215

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            +       LE        I+  A    D   +GP     ++D   R G        L  
Sbjct: 216 HD----WEQLEFFE-GCMPIEELARRGVDTPRFGPMSPKGLDDP--RTGRWPYAVAQLRQ 268

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
           E     +    G  T L    Q   +  IPGLE   I+R G      Y+N P+ L  TL+
Sbjct: 269 EDRAGRMWSLVGFQTGLKWGDQKVVVNLIPGLENAEIVRYGVMHRNTYLNAPEVLDATLQ 328

Query: 357 TKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLT 416
            +     F+AG + GT GY E+AA G +AG N+AR +  L  +     +S +G ++  L 
Sbjct: 329 LRADPQKFVAGVLAGTEGYLESAATGWLAGTNAARLARGLTPLTPPP-ESMLGGLVRYLA 387

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
                         +      +P N +  L P
Sbjct: 388 --------------SANPKGFQPMNVNWALVP 405


>gi|256827138|ref|YP_003151097.1| tRNA:m(5)U-54 methyltransferase [Cryptobacterium curtum DSM 15641]
 gi|256583281|gb|ACU94415.1| tRNA:m(5)U-54 methyltransferase [Cryptobacterium curtum DSM 15641]
          Length = 530

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 167/480 (34%), Gaps = 61/480 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL- 53
           + Y V +IG G AG EAA   A  G    LI          H+T     + C+ ++    
Sbjct: 20  QKYHVNIIGAGLAGSEAALQLAARGIKVTLIESRPLFTDGVHETGLCAELVCSNSLKSES 79

Query: 54  ---GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L RE+D L   + + A    +              G     DR  +  A+  +
Sbjct: 80  LSSAAGMLKRELDVLGSFLYQTARETRV------------PAGGALAVDRYAFAHAVTDQ 127

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSI-------VMQDNSMIRCSTVVLTTGTFLRGVIH 163
           + +  +++++ GE    + + +I   +              +  +T  LT+ +F   +  
Sbjct: 128 VTAAPSINLVCGEALSVHADGSISLRVDKNGREEKTPKADAVIVATGPLTSDSFADFITG 187

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERL 223
           +      +     +P     +      F   R + G    L+     + K E +      
Sbjct: 188 VTGQDNLSFFDAAAPIVMADSLDTNILFRQSRYEEGQGDYLNAP---FTKEEYE------ 238

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDK 281
               F+T  ++ +++     R + ET  +    + I+  A    D   +GP     + D 
Sbjct: 239 ---QFITALLSAKRV----VRRDFETKELFQACQPIEEIARAGVDAPRFGPLKPVGLVD- 290

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
            +R  +R    + L  E          G  T L    Q +  + IPGLE+    R G   
Sbjct: 291 -LRTHKRPWAALQLRAENREGTCYNLVGFQTNLTFPEQRRVFQMIPGLEQAEFARYGVMH 349

Query: 342 EYDYINPKELFPT-LETK--KISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
              +++  +L  + L  K  +  G  LF AGQI GT GY EA   GL A      +   L
Sbjct: 350 RNTFMDAPQLLASDLSFKTERWQGVPLFAAGQITGTEGYCEAIRSGLHAAFGVVSRLRNL 409

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL--RPDNADNRLTPIGMKLG 454
                SR  ++  + +    S    E Y+           L  R  N   R      + G
Sbjct: 410 TPPPLSRQMAFGSLWLW--ASDPTTEDYQPMHVNFGIIEPLAERVKNKRARYDAYAQRGG 467


>gi|82946422|dbj|BAE51286.1| NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 157/467 (33%), Gaps = 78/467 (16%)

Query: 35  THKTSTIGSMSCNPAIGG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            H+T  +  + C+ ++          G L  E+     L+   ADA           K P
Sbjct: 6   AHQTDGLAELVCSNSLRSDDADYNAVGLLHEEMRRAGSLILAQADA----------HKVP 55

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCS 148
           A  G     DR+ +   +Q  +     + +++ EVAG   E      I      S     
Sbjct: 56  A--GGALAVDRDGFSQGVQAALAGHPRITILREEVAGLPPEDWEQVVIATGPLTSPAMAE 113

Query: 149 TVVLTTGTFLRGVI-----HIGKLKIPAGRMGDSPSN--SLFNSFMKFDFDTGRLKTGTP 201
            +   TG             + K  I  G+            + ++    D  +  T   
Sbjct: 114 ALRGMTGEDSLAFFDAIAPIVTKDSIDFGKAWFQSRYDKGTGSDYINCPLDREQYNTFID 173

Query: 202 ARLDGKTIIWDKTEKQ-FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
           A + G+ + + + EK     E  +P   M ++                            
Sbjct: 174 ALITGEKVDFHEWEKDTPYFEGCLPIEVMAER---------------------------- 205

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
                D  +YGP     + +     G +    + L  +     +    G  T L    Q 
Sbjct: 206 ---GKDTLAYGPMKPVGLTNPN---GPKPFAVVQLRQDNALGTLYNLVGFQTKLRHGEQA 259

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +  R IPGLE     R G      +IN P+ L  TL  K    L LAGQ+ G  GY E++
Sbjct: 260 RIFRAIPGLENAEFARLGGLHRNTFINGPRVLDRTLRLKAQPRLRLAGQVTGCEGYVESS 319

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           A GL+AG+ +A ++   D +    T + +G +++ +T     E Y             +P
Sbjct: 320 AIGLLAGLFAAAEALGRDMLRPPATTA-LGALLNHVTGDAEAETY-------------QP 365

Query: 440 DNADNRLTPIGMKLGCIGER---RQKRFAKYIQEYNFLRSLLKSLVL 483
            N +  L P   +    G R   R ++     +    L   L ++  
Sbjct: 366 MNINFGLFPPPPERDERGRRVKGRDRKKLYAQRAREALTPWLNTIRE 412


>gi|218888228|ref|YP_002437549.1| tRNA (uracil-5-)-methyltransferase Gid [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759182|gb|ACL10081.1| gid protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 445

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 149/448 (33%), Gaps = 45/448 (10%)

Query: 18  CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG---LMGRVAD 74
           CE A   A+ G +  L   K         +P +  L   + +R  D   G   L   + +
Sbjct: 17  CECARRLARAGVAVTLYEMKPQAFSPAHASPDLAELVCSNSLRSDDIASGVGLLKQEMRE 76

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
              +  +V    + PA  G     DREL+   M   + ++ N+ V++ E+   +  +   
Sbjct: 77  LDSLVMQVAEATRVPA--GKALAVDRELFARRMTEAMEAEPNITVVRREITSIHAPE--- 131

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
               +    +   S   L +      +  +   +        +P  +  +      F   
Sbjct: 132 ----LAAADVAVVSAGPLASEPLAASLAEVVGSRHLYFYDAIAPIIAAESIDTSIAFQGS 187

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
           R   G    L+      ++ E     E         +K    + E  +          + 
Sbjct: 188 RYDEGEGDYLNCPM---NREEY----EAFHAALLAAEKAPTHEFEKEVHFEGCMPIEALA 240

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
           E  +           +GP       D   R G+R    + L  E LN       G  T L
Sbjct: 241 ERGER-------TLVFGPFKPVGFTDP--RTGQRPYAIVQLRAENLNRTAYNLVGCQTKL 291

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTT 373
               Q +  R IPGL     +R G      Y+N P  L   L  +    + LAGQI G  
Sbjct: 292 KYGEQERVFRMIPGLANAEFVRHGSMHRNTYVNAPLVLADDLALRPHRHVHLAGQITGVE 351

Query: 374 GYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEY 433
           GY E+AA GL  G+  A ++   D +     D+ +G ++  L +                
Sbjct: 352 GYVESAACGLWLGMLLAARALGRD-LPAPPVDTALGALLHHLRTPA-------------- 396

Query: 434 RISLRPDNADNRLTPIGMKLGCIGERRQ 461
             + +P N +  L P   +     +R+ 
Sbjct: 397 -KNFQPSNVNFGLMPELTQRAKKRDRKA 423


>gi|303232720|ref|ZP_07319405.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae PB189-T1-4]
 gi|302481206|gb|EFL44281.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae PB189-T1-4]
          Length = 446

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 137/465 (29%), Gaps = 48/465 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E A   A  G +  L   +               L   + ++ +     
Sbjct: 5   VTVIGAGLAGSECALQLAARGVNVNLYEMRPYHTSPAHHTSLCAELVCSNSLKSMREDSA 64

Query: 68  LMGRVADAAGIQFRVL-NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                 + A +   VL          G     DRE +  A+   I     + V +  V  
Sbjct: 65  SGLLKHELAQLGSYVLQCAYDNRVSAGSALAVDREAFSAAVTALIEKNPYIHVHRQCVTR 124

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
               + +I                 L        +     ++  +     +P     +  
Sbjct: 125 IPEGRVVIC-------------AGPLCADELFDDIGARIGMQSRSFYDAAAPIVDALSIN 171

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-FMTDKITNRQIECGITRT 245
               F+  R +       D     ++K         LI     +T       + C     
Sbjct: 172 RDVAFEQSRYQDEHD-SADYLNCPFEKDSYIHFYNELIAAERTITKDFEQSDLFCA---- 226

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDV 304
                    + I+  A    D   YG      I     R    R    + L  E  N   
Sbjct: 227 --------CQPIEEVAKTGIDALRYGALKPVGIRYPQGRSTYARPYANVQLRAENANKTA 278

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +  R IPGLE     R G      +I+ P  L  T      S L
Sbjct: 279 YNLVGFQTNLTWPEQKRVFRLIPGLEHAEFFRYGVMHRNSFIDSPHVLNATFAL-PDSTL 337

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
             AGQI GT GY EA A GL A +N   +     C     T ++ G ++   TS      
Sbjct: 338 RFAGQITGTEGYVEAIASGLYAALNCYAELIDKPCALLPATSAF-GSLVQYATSADT--- 393

Query: 424 YRMFTSRAEYRISLRPDNADNRLT-PIGMKLGCIGERRQKRFAKY 467
                      ++ +P + +  L  P+   +    + R   +AK 
Sbjct: 394 -----------VNFQPMHVNFGLMPPLPAPIRN-KKERYAAYAKR 426


>gi|162453390|ref|YP_001615757.1| gid protein [Sorangium cellulosum 'So ce 56']
 gi|205830340|sp|A9FRC1|TRMFO_SORC5 RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|161163972|emb|CAN95277.1| gid protein [Sorangium cellulosum 'So ce 56']
          Length = 477

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 148/464 (31%), Gaps = 49/464 (10%)

Query: 15  HAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGG----LGKGHLVRE 61
            AGCEAA   A+ G    L+  K            +  + C+ ++ G       G L  E
Sbjct: 17  LAGCEAAYQLAQRGLRVRLVEMKPHRRTPAQTSDRLAELVCSNSLRGAALSNAVGLLKEE 76

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +  +  L  R AD                  G     DRE +  AM R I +   + V  
Sbjct: 77  LRRVGSLALRCADET------------SVPAGGALAVDRERFAEAMTRAIEAHPRITVEH 124

Query: 122 GEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRMGDS 177
            EV     E+ +I  +  +  D      +  V          I   +    I   R+   
Sbjct: 125 REVTEIPAERPVILATGPLTSDALAASLAAAVGAEHLAYYDAIAPIVSADSIDWSRVWKQ 184

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD--KTEKQFADERLIPFSFMTDKITN 235
                  +         + +                 + + +  DE  +   F  +    
Sbjct: 185 SRYGKGGAVR--GDRAAQREQTAQPERAAPPEDAAERRDDAEAGDEAYVNCPFD-EAQYK 241

Query: 236 RQIECGITRTNLET-------HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             ++  +    +E        +       +  A       ++GP     + D   R G R
Sbjct: 242 AFVQALVASEKVEARAFEEVRYFEGCLPCEVMAARGEQTLAFGPMKPVGLTDP--RTGRR 299

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN- 347
               + L PE          G  T +    Q +  R +PGLE+   +R G      +++ 
Sbjct: 300 PYAVLQLRPEDEAATAYNLVGFQTRMKYAEQLRVFRMVPGLEEAEFLRMGSVHRNTFVDA 359

Query: 348 PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSY 407
           P  L P +E + + G+ LAGQI G  GY E+AA G +  I  A++    + +      + 
Sbjct: 360 PALLGPAMELRALPGVHLAGQIAGVEGYVESAAAGFLCAILLAQQLRN-EPLRPPPPTTA 418

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM 451
           +G ++  L  K          S   +      D A  +L     
Sbjct: 419 LGGILTHLGRKQPT----YQPSNITWAHIAPLDPAHGKLRKRAR 458


>gi|290968892|ref|ZP_06560429.1| tRNA:M(5)U-54 methyltransferase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781188|gb|EFD93779.1| tRNA:M(5)U-54 methyltransferase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 437

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 149/467 (31%), Gaps = 55/467 (11%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---ALDGLMGRVADAAGI 78
               + G    L   +               L   + +R  +   A+  L   +     +
Sbjct: 19  WQLCRRGVPVELAEMRPYKQSPAHHTDLFAELVCSNSLRAANIENAVGLLKEEMRQLHSL 78

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
                +  + PA  G     DR  +   +  ++ ++  + +   E      E   I    
Sbjct: 79  IMEAADATRVPA--GGALAVDRISFSKYITEKLQAEPLVTIRTEERTQVPPEGLCII--- 133

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
                    +T  LT G     +  +            +P  ++ +  M   +   R   
Sbjct: 134 ---------ATGPLTGGDLAAYIQALTGQDYFHFHDAAAPIVTVESLDMTKVYRAARYGK 184

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
           G    L+                      +          EC     + E +  + E   
Sbjct: 185 GGADYLNC---------------PFTQAEYERFWQALTTAECAALH-DFEKNDGVFEGCM 228

Query: 259 H---SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
                A    D   +GP     +       GE     + L  +  +  +    G  T L 
Sbjct: 229 PIEIMAQRGVDTMRFGPMKPVGLARPD--TGEVPYAVVQLRQDNGSATLYNIVGFQTHLK 286

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG 374
              Q +    IPGLE+   +R G      YIN P+ L PTL+ KK   LF AGQ+ G  G
Sbjct: 287 FSEQKRVFSMIPGLEEAEFVRYGVMHRNSYINSPELLLPTLQYKKEPRLFFAGQLTGVEG 346

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           Y E+AA GL+AGIN+A  +    CI FSR  + IG +   +++                 
Sbjct: 347 YLESAATGLLAGINAAHCAAGNACITFSR-QTAIGGLSQYISTGPNPH------------ 393

Query: 435 ISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
              +P N +  +    + +    ++++K      +    +  + + +
Sbjct: 394 --FQPMNINFGIM-ASLDVRKRMKKKEKNALLATRALAEVERMKEKI 437


>gi|257784506|ref|YP_003179723.1| gid protein [Atopobium parvulum DSM 20469]
 gi|257473013|gb|ACV51132.1| gid protein [Atopobium parvulum DSM 20469]
          Length = 444

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 169/492 (34%), Gaps = 77/492 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V V+G G AG E A   A  G S  LI          H T     + C+ ++        
Sbjct: 5   VTVVGAGLAGSECALQLASRGISVELIEQRPVVSSPAHHTDMFAELVCSNSLKSTKEDSA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +   +  +A+                  G     +RE +  A+  +I + 
Sbjct: 65  AGILKSELKKMGSFLLSLAEE------------NSVPAGGALAVNREEFSRAVTEQIRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   EV   + E  II++  +  + +    +  + T        +       A  +
Sbjct: 113 PNISVTHAEVTELSEEPTIIAAGPLCSDRLYEAISERVGT--------NRMSFFDAAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
               S      F +  +D   +         G        ++++        +F+ + ++
Sbjct: 165 VSEESIDRSIVFSQSRYDDLGI---------GDYFNCPMNKEEYD-------TFVDELLS 208

Query: 235 NRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +++   I   + E   +    + I+  A    D   +G      + D   R G+R    
Sbjct: 209 AKRV---IGH-DFEQSDLFQACQPIEEVARTGHDSIRFGALKPVGLIDP--RTGKRPWAA 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E          G  T L    Q +    IPGLE    +R G      +++ P  L
Sbjct: 263 VQLRAENTAKTAFNLVGFQTNLTWGEQKRVFTLIPGLENAEFVRYGVMHRNSFVDSPHAL 322

Query: 352 FPTLETKKISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIG 409
             +     I G  + LAGQI GT GY EA A GL+A +N   + +         T S +G
Sbjct: 323 DGSF---GIPGTSIILAGQITGTEGYVEAIASGLLAALNMYARLSGKKTFKLPLTTS-LG 378

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            ++   T+    +          + I            P+   +    ERRQK   +  +
Sbjct: 379 SLVGYATNPKTKD---YQPMHVNFGI----------FEPLDEHIKRKDERRQKMMERAHK 425

Query: 470 EYNFLRSLLKSL 481
           +++   +  + L
Sbjct: 426 DFDDYIASRQEL 437


>gi|210633133|ref|ZP_03297700.1| hypothetical protein COLSTE_01613 [Collinsella stercoris DSM 13279]
 gi|210159287|gb|EEA90258.1| hypothetical protein COLSTE_01613 [Collinsella stercoris DSM 13279]
          Length = 444

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 153/438 (34%), Gaps = 63/438 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---------ITHKTSTIGSMSCNPAIGGL----G 54
           V V+GGG AGCE A   A  G S  L           H+TS +  + C+ ++        
Sbjct: 6   VTVVGGGLAGCECACQLADRGVSVLLREMRPAVSSPAHRTSRLAELVCSNSLKSTRVDSA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  +  ++   A+ A +              G     DRE++   ++ E+ S+
Sbjct: 66  AGLLKEELRRMGSVLLACAERAAV------------PAGGALAVDREVFSREVEDEVASR 113

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++  +GEV        +I             +   L +    R V+ +      +   
Sbjct: 114 PLIEQQRGEVTSIPDGPCVI-------------AAGPLCSAALSRQVLDLVGGDALSFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRL-KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
             +P            F   R  + G    L+     + K E     +  I      +++
Sbjct: 161 AAAPIVDATTIDRDVVFAQSRYDERGGGDYLNAP---FTKDEY----DVFIDALVSAERV 213

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
             +  E               +  +  A    D   +G      + D   R G+R    +
Sbjct: 214 VLKDFE-------RRELFQACQPAEEVARTGHDAIRFGAMKPVGLIDP--RTGKRPWAAV 264

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E          G  T L    Q +  R IPGLE+    R G      +++ P+ L 
Sbjct: 265 QLRAENAECTAYNLVGFQTNLTFSEQKRVFRMIPGLERAEFFRYGVMHRNTFVDAPRVLD 324

Query: 353 PTLETKKISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
            T     + G  + LAGQI GT GY EA A GL+A +N+    +    +    T + +G 
Sbjct: 325 KTF---AVPGTRIRLAGQITGTEGYTEAIASGLLAALNTYADLSGAPRVELPVTGA-LGS 380

Query: 411 MIDDLTSKGVLEPYRMFT 428
           ++   T +   E Y+   
Sbjct: 381 LVAYATDRAT-EDYQPMH 397


>gi|254450907|ref|ZP_05064344.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 238]
 gi|198265313|gb|EDY89583.1| tRNA:m(5)U-54 methyltransferase [Octadecabacter antarcticus 238]
          Length = 440

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 148/458 (32%), Gaps = 47/458 (10%)

Query: 16  AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EIDALDGLMGR 71
           AG EAA  AA LG +  +   +            +  +   +  R    E +A+  L   
Sbjct: 2   AGSEAAWQAANLGVNVVIHEMRPKVETFAHQTGNLAEMVCSNSFRSDDDEQNAVGLLHWE 61

Query: 72  VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK 131
           +  A GI     +  K PA  G     DR+L+  A+   +    N+ V   E+     + 
Sbjct: 62  MRTAGGIIMTTADKHKLPA--GGALAVDRDLFAEAVTATLTVHPNISVSYEEIDSLPDDG 119

Query: 132 -NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
             II++  +    +   + +   TG                  +    S  +  ++M+  
Sbjct: 120 QWIIATGPLTSGKL--ATAIAAETGAEALAFFD------AIAPILYHDSIDMTKAWMQSR 171

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETH 250
           +D G       A L+      D        E  I      +K   ++ E           
Sbjct: 172 YDKGETIEEQTAYLNCPMTKDD-------YEAFIDALLAAEKTEFKEGETAGYFDGCLPI 224

Query: 251 RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGI 310
            ++ E          +   +GP     + ++      +    + L  +     +    G 
Sbjct: 225 EVMAE-------RGRETLRFGPMKPVGLTNE-HDPQNKPYAVVQLRRDNALGTLYNIVGF 276

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQI 369
            T +    Q    + IPGLE  N  R G      ++N P  L   +  K    +  AGQI
Sbjct: 277 QTKMKYGAQTDVFKRIPGLENANFARLGGIHRNTFLNSPTLLDGQMRLKSKPNIRFAGQI 336

Query: 370 NGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTS 429
            G  GY E+AA GL+AG  +  +           T +  G ++  +T             
Sbjct: 337 TGVEGYVESAAMGLLAGRLAVAEMRGETLGPVPNTTA-TGALVTHITGGADA-------- 387

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
                 + +P N +  L P     G    RR ++    
Sbjct: 388 -----KTFQPMNVNFGLFPP--VDGLKSGRRGRKDRYK 418


>gi|294782270|ref|ZP_06747596.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294480911|gb|EFG28686.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 434

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 172/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKQKTPAHSKDYYSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  ++  VAD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLMKEELRILGSMLIEVAD----------RNRVPAGQALA--VDRDGFSEEITKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 TENIEIIEEEFTEIPEDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESINMDIAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   +  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--KTDKMDHA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            + L  +     +    G  T L    Q +    IPGLE    +R G      +IN  +L
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKL 321

Query: 352 FPTLETKKIS-GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
                  K    ++ AGQI G  GY  A A G+ A IN A + N           S IG 
Sbjct: 322 LDKTLKLKNKDNVYFAGQITGGEGYVTAIATGMYAAINVANRLNGEKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRRL 419

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 420 SQRAIEYLKK 429


>gi|297568410|ref|YP_003689754.1| gid protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924325|gb|ADH85135.1| gid protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 445

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 151/463 (32%), Gaps = 54/463 (11%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---ALDGLMGRVADAAGI 78
              A+ G +  L   K         +P +G L   + +R  D   A+  L   +     +
Sbjct: 24  WQVARRGCAVTLYEMKPGNCSPAHQSPDLGELVCSNSLRAEDPHSAVGLLKEEMRRLGSL 83

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
                +  + PA R      DR L+   + + +  +  + +I+ EV              
Sbjct: 84  VMAAADATRVPAGRALA--VDRSLFARHITQALEQEPLVTIIRREVTEIPPAG------- 134

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               + I  +   L        +  +   K  A     +P     +      F   R + 
Sbjct: 135 ---GAPIIIAAGPLAAAGLAAALARLIGDKQLAFYDAIAPIVYADSLNRDIIFSASRYEE 191

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
           G    L+      D+ + Q    R I       ++     E            I+     
Sbjct: 192 GPGDYLNCPM---DREQYQ----RFIKALLTAPQVPLHDFEEPRYFEGCLPIEIM----- 239

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A    D   +GP     + D   R G      + L  E     +    G  T L    
Sbjct: 240 --AARGEDTPRFGPMKPVGLIDP--RTGREPYAVVQLRKENREGMLYNLVGFQTKLSHAG 295

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q +  R IPGLE+    R G      ++  P+ L  +L+ +  + + LAGQI+G  GY E
Sbjct: 296 QKEVFRQIPGLEQAQFARLGSIHRNTFVCAPRVLQASLQLQARADILLAGQISGVEGYVE 355

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           +AA GL+AGIN+A        +     ++ +G +I+ L                      
Sbjct: 356 SAAGGLLAGINAAALLLG-KPLSSPPPETALGALINHLIRTEAD--------------VF 400

Query: 438 RPDNADNRLTP-------IGMKLGCIGERRQKRFAKYIQEYNF 473
           +P N +  L P         +     GE R +   + + ++  
Sbjct: 401 QPSNINFGLFPPLMAANGKKIPKRLRGETRARIARQALADWQK 443


>gi|328954305|ref|YP_004371639.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454629|gb|AEB10458.1| Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           [Desulfobacca acetoxidans DSM 11109]
          Length = 435

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 146/461 (31%), Gaps = 50/461 (10%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDALDGLMGRVADAAGI 78
             A + G    L   K         +P +G L   + +R      A+  L   +     +
Sbjct: 21  WQAQRQGVRVCLFEMKPERFSPAHQSPLLGELVCSNSLRSEAPDSAIGLLKNELRRLGSL 80

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
                   + PA  G     DR+ +   +   +  Q ++++++ EV   N  +  +    
Sbjct: 81  IMGAAAASRVPA--GKALAVDRQAFARFITEALAEQPDVEIVRQEVTALNFSEPAVI--- 135

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
                    +T  LTT +    +  +   +        SP     +      F   R   
Sbjct: 136 ---------ATGPLTTDSMAESLRELTGREQLHFYDAISPIVFADSINHDIVFRASRYGA 186

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
           G         +    TE  +        +F     T   +    T             I+
Sbjct: 187 GD------DYLNCPLTEADY-------QTFYQALTTAELMPLR-TFEEARFFE-GCLPIE 231

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A        +GP     + D     G +    + L  E    ++    G  T L    
Sbjct: 232 VMAARGYQTLLFGPMKPVGLMDP--HTGRQPFAVVQLRQENREGELYNLVGFQTRLKYGE 289

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q + +R +PGLE+    R G      +I+ P  L   L       LFL GQI G  GY E
Sbjct: 290 QRRVLRLLPGLEQAEFARLGSVHRNTFIHSPGLLTRFLNFAARPQLFLGGQITGVEGYLE 349

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           + A G +AG+N+AR +     +     ++ +G ++  +T+  V +               
Sbjct: 350 STAMGWLAGVNAARLAR-QQPLLSPPPETAMGALVRHITNTEVRD--------------F 394

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           +P N +  L P          R      + ++      + L
Sbjct: 395 QPMNVNFGLFPALPGRVPKKGRGAAYAQRALEALEAWLARL 435


>gi|15805245|ref|NP_293933.1| tRNA (uracil-5-)-methyltransferase Gid [Deinococcus radiodurans R1]
 gi|6457879|gb|AAF09795.1|AE001883_1 gid protein [Deinococcus radiodurans R1]
          Length = 482

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           + V+G G AG EAA  AAKLG    L   +   +           L     +    E+ +
Sbjct: 23  ITVVGAGLAGSEAALAAAKLGVRVRLFEMRPQKMTPAHRTANFAELVCSTSLGGEGEMQS 82

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +           +  + PA  G     DR+ +   +  ++ +   ++V++GEV
Sbjct: 83  KGLLQAEMRSVGAAIVTSADASRVPA--GNALAVDRDAFSAHVTEQVKNHPLIEVVEGEV 140

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +I             ++  LT       +  +   +  +     +P   + +
Sbjct: 141 ETVPDGICVI-------------ASGPLTADALASDLRRLTGSERLSFYDAAAPVIDVDS 187

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +  GR        ++     + K E     E L      T     +        
Sbjct: 188 IDMDIAWRAGRYDQSAD-YINCP---FTKEEYLAFFEALETARSHTPHDWEKLE----FF 239

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   I       A    D   +GP     ++D   + G        L  E     +
Sbjct: 240 EGCMPIEEI-------ARRGVDTPRFGPMSPKGLDDP--KTGRWPYAVAQLRQEDAEGRM 290

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q   ++ IPGL   +I+R G      Y+N P+ L  TL+ +     
Sbjct: 291 WSLVGFQTGLKWGDQKAVVQLIPGLHNADIVRYGVMHRNTYLNAPEVLDSTLQLRADPQK 350

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            +AG + GT GY E++A G +AG N+AR +  L+ +     +S +G ++  L        
Sbjct: 351 LVAGVLAGTEGYLESSATGWLAGTNAARLALGLEPLTPPA-ESMLGGLVRYLA------- 402

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP 448
                  +      +P N +  L P
Sbjct: 403 -------SANPKGFQPMNVNWALVP 420


>gi|26006777|sp|Q9RXU7|TRMFO_DEIRA RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
          Length = 465

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 150/445 (33%), Gaps = 51/445 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           + V+G G AG EAA  AAKLG    L   +   +           L     +    E+ +
Sbjct: 6   ITVVGAGLAGSEAALAAAKLGVRVRLFEMRPQKMTPAHRTANFAELVCSTSLGGEGEMQS 65

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +           +  + PA  G     DR+ +   +  ++ +   ++V++GEV
Sbjct: 66  KGLLQAEMRSVGAAIVTSADASRVPA--GNALAVDRDAFSAHVTEQVKNHPLIEVVEGEV 123

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +I             ++  LT       +  +   +  +     +P   + +
Sbjct: 124 ETVPDGICVI-------------ASGPLTADALASDLRRLTGSERLSFYDAAAPVIDVDS 170

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
             M   +  GR        ++     + K E     E L      T     +        
Sbjct: 171 IDMDIAWRAGRYDQSAD-YINCP---FTKEEYLAFFEALETARSHTPHDWEKLE----FF 222

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
                   I       A    D   +GP     ++D   + G        L  E     +
Sbjct: 223 EGCMPIEEI-------ARRGVDTPRFGPMSPKGLDDP--KTGRWPYAVAQLRQEDAEGRM 273

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q   ++ IPGL   +I+R G      Y+N P+ L  TL+ +     
Sbjct: 274 WSLVGFQTGLKWGDQKAVVQLIPGLHNADIVRYGVMHRNTYLNAPEVLDSTLQLRADPQK 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            +AG + GT GY E++A G +AG N+AR +  L+ +     +S +G ++  L        
Sbjct: 334 LVAGVLAGTEGYLESSATGWLAGTNAARLALGLEPLTPPA-ESMLGGLVRYLA------- 385

Query: 424 YRMFTSRAEYRISLRPDNADNRLTP 448
                  +      +P N +  L P
Sbjct: 386 -------SANPKGFQPMNVNWALVP 403


>gi|139439758|ref|ZP_01773149.1| Hypothetical protein COLAER_02180 [Collinsella aerofaciens ATCC
           25986]
 gi|133774908|gb|EBA38728.1| Hypothetical protein COLAER_02180 [Collinsella aerofaciens ATCC
           25986]
          Length = 445

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/501 (19%), Positives = 158/501 (31%), Gaps = 96/501 (19%)

Query: 5   SYD-VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL- 53
            +D V VIGGG AG E A   A  G +  L           H T  +  + C+ +     
Sbjct: 2   QFDQVTVIGGGLAGSECAIQLADRGFAVKLCEMRPQVSSPAHHTDHLAELVCSNSFKSTR 61

Query: 54  ---GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                G L  E++ +  ++   A  A +              G     DR  +   ++ E
Sbjct: 62  PDSAAGLLKAELERMGSVLLDCAHRAAV------------PAGGALAVDRVKFSELVEAE 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + ++ N++V+ GEV        +I                                    
Sbjct: 110 VAARPNIEVVHGEVTQIPEGHVVI-----------------------------------A 134

Query: 171 AGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
           AG +       L    MK    D           +D  T+  D    Q   E      ++
Sbjct: 135 AGPLCSPA---LSEEVMKLVGGDALAFFDAAAPIVDASTLDMDVLFSQSRYEEQGSGDYL 191

Query: 230 TDKITNRQIECGITRTNLETHRIIME-----------NIKHSAIYSGDIKSYGPRYCPSI 278
              +   + E  I         ++ +             +  A    D   +G      +
Sbjct: 192 NAPLNKEEYEAFIEALTTADRVVLKDFEGGDLFQACQPAEEVARTGKDAIRFGAMKPVGL 251

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
            D   R G R    I L  E          G  T L    Q +    +PGLE     R G
Sbjct: 252 TDP--RTGRRPWAAIQLRAENKEKTAYNLVGFQTNLTFGEQKRVFHMVPGLENAEFFRYG 309

Query: 339 YAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
                 +++ P  L  T      +G+ LAGQI GT GY EA A GL+A +N+  ++    
Sbjct: 310 VMHRNTFVDAPHVLDSTFAV-PGTGVRLAGQITGTEGYMEAVATGLLAALNTYAEAIGAA 368

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457
            +   R  + +G ++   T                  +  +P + +  L P  ++ G   
Sbjct: 369 GVELPRVGA-LGALVGYATDPAT--------------VGYQPMHVNFGLVP-PLEDGKRR 412

Query: 458 ERRQKRFAKYIQEYNFLRSLL 478
            +R +  A   +    L + L
Sbjct: 413 SKRDRYQAYADRALEALDAYL 433


>gi|114570442|ref|YP_757122.1| tRNA (uracil-5-)-methyltransferase Gid [Maricaulis maris MCS10]
 gi|122315720|sp|Q0ANF3|TRMFO_MARMM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|114340904|gb|ABI66184.1| gid protein [Maricaulis maris MCS10]
          Length = 466

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 149/447 (33%), Gaps = 39/447 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           + VIGGG AG EA       G    L   +            +  L   +  R  D    
Sbjct: 12  IHVIGGGMAGSEATWQLVSQGVPVILHEMRGVKGTDAHHTDGLAELVCSNSFRSDDHRTN 71

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +     I  R  +  + PA  G     DR+++  A+ +E+     + + + E
Sbjct: 72  AVGLLHEEMRRLDSIILRQGDAARLPA--GGALAVDRDVFSQAVTKELSEHPLVTISREE 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +     E     S+++            LT+ +    ++        A     +P     
Sbjct: 130 IPALPPEDWD--SVIIATG--------PLTSESLSEAILKETGEGELAFFDAIAPVVYRD 179

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +  +   R   G         +       Q+  E  I      +K   ++ E    
Sbjct: 180 SVNTEKAWFQSRYDKGDTDAERKAYLNCPMDRDQY--EAFIDALIAAEKTEFKEWE---- 233

Query: 244 RTNLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
                T        I+  A    +   +GP     + +       +    + L  +    
Sbjct: 234 ---ANTPYFDGCLPIEVMAERGRETLRHGPMKPVGLTNPHNPTV-KPWAIVQLRQDNALG 289

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q + +R IPGLE+    R G      ++N PK L   L  K   
Sbjct: 290 TLFNLVGFQTKMKYGAQGEVLRMIPGLEEARFARLGGIHRNTFLNSPKLLDAQLRLKSQP 349

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L  AGQ+ G  GY E+AA GL+AG  +A +      +      + +G +I  +T   ++
Sbjct: 350 RLRFAGQLIGVEGYVESAAMGLLAGRYAAAERLGAS-LTPPPATTALGALIGHVTGGHLI 408

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTP 448
                       + S +P N +  L P
Sbjct: 409 ----------SGKGSFQPMNVNFGLFP 425


>gi|312879575|ref|ZP_07739375.1| gid protein [Aminomonas paucivorans DSM 12260]
 gi|310782866|gb|EFQ23264.1| gid protein [Aminomonas paucivorans DSM 12260]
          Length = 440

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 156/480 (32%), Gaps = 72/480 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + ++GGG AG EAA   A  G +  L           H T  +G + C+ ++G       
Sbjct: 5   ITLVGGGLAGSEAAWQLASRGVAVRLFEMRPRATTPAHTTDLLGELVCSNSLGADQTTSP 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E++ L  L+   A             + PA R      DRE +   + R +   
Sbjct: 65  AGILKGELETLGSLILACA----------RRHRVPAGRALA--VDRERFAREVTRTLEEH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             ++V++ EV                +   I   +  LT+ +    + ++      A   
Sbjct: 113 PLVEVVREEVTALP------------EGPAILA-SGPLTSPSLAEALRNLVGEDFLAFHD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +L +   +  +   R   G         +           +     +F    + 
Sbjct: 160 AVAPIVTLESVDPERSYRGSRYGQGE------DYVNCPL-------DEPTYRAFRQALVE 206

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
             Q                   I+  A    D   +GP     + D     G      + 
Sbjct: 207 AVQAPRHDFEVKQRFFE-GCLPIEEIARRGEDTLRFGPMRPVGLPDP---SGREPFAVVQ 262

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFP 353
           L  +     +    G  T L    Q +  R IP LE+   +R G      ++  P+ L  
Sbjct: 263 LRQDNEEGTLYNLVGFQTNLLWGEQDRIFRLIPALERAEFVRKGVMHRNLFVCAPRVLDG 322

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            L  +    LFLAGQ+ G  GY E+ A G  A +    +    +   F R  + +G ++ 
Sbjct: 323 FLRPRGREDLFLAGQVTGVEGYLESTAMGAAAALFLLARLRGEELPVFPR-KTALGSLLH 381

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIG-MKLGCIGERRQKRFAKYIQEYN 472
            L             +R E   + +P N +  + P    K+    ER +    +  +   
Sbjct: 382 YLKD-----------ARPE---TFQPMNVNLGIFPKLERKIKSRTERCEAYGVRSAEALE 427


>gi|317488104|ref|ZP_07946681.1| hypothetical protein HMPREF1023_00379 [Eggerthella sp. 1_3_56FAA]
 gi|316912812|gb|EFV34344.1| hypothetical protein HMPREF1023_00379 [Eggerthella sp. 1_3_56FAA]
          Length = 477

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/495 (18%), Positives = 163/495 (32%), Gaps = 51/495 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V ++G G AG EAA   A  G    L+  +  T   +        L   + ++      A
Sbjct: 17  VTIVGAGLAGSEAALQLADRGVRVRLVEMRPKTPTLVHVTGCCAELVCSNSLKSEKPDSA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +A+     +    +   PA  G     DR  +  A+   + +   +D++  EV
Sbjct: 77  AGMLKRELAELGSQLYAQAKLHAVPA--GGALAVDRTAFAEAVTALVEAHPLIDLVHEEV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                      ++V+    +   S  +  + + L G  H+      A  +  + S     
Sbjct: 135 VDLVQAAEGADALVVAAGPL--ASDALAASLSRLAGEEHLAFYDAAA-PIVMADSLDYAK 191

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F +  ++      G     D     + + E           +F+ + +   ++     R
Sbjct: 192 LFRQSRYEDAAADAG-----DYLNAPFSREEYD---------AFVDELVAAERV----IR 233

Query: 245 TNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            + ET  +    + I+  A    D   +G      + D   R G R    + L  E  + 
Sbjct: 234 RDFETRDLFQACQPIEEIARKGHDAPRFGTLKPVGLTDP--RTGHRPWAALQLRAEDAHG 291

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK-- 359
                 G  T L    Q +  R IPGLE     R G      +++ P+ L  +L  +   
Sbjct: 292 SSYNLVGFQTNLTFPEQRRVFRLIPGLENAEFARYGVMHRNTFVDAPRLLDESLRLRSPE 351

Query: 360 ISGL----FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
              L     LAGQI GT GY EA   GL      A +          R ++  G ++   
Sbjct: 352 AERLGVPVHLAGQIAGTEGYCEAIRSGLHVAFAVAAELRGAQAPALPR-ETAFGALLAYA 410

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T   V +          + I          L P   ++    +R      +  +     +
Sbjct: 411 TDPAVKD---YQPMHVNFGI----------LPPFEQRIRNKRDRYAAYAERGAEALAAYK 457

Query: 476 SLLKSLVLTSKNLSS 490
           + L +  L+S   + 
Sbjct: 458 AELAARGLSSDAAAR 472


>gi|218189780|gb|EEC72207.1| hypothetical protein OsI_05295 [Oryza sativa Indica Group]
          Length = 305

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    CNPA+GG  K  LV E
Sbjct: 64  LEERYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHE 123

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G MG++AD   +Q RVLN  KGPAVR  R Q D+  Y + M++ + S +NL + +
Sbjct: 124 VDALGGEMGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIRE 183

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
                      + +  +           +VVLTTGTF+  
Sbjct: 184 AMATEVMIGQNDNVEGVRTFFGMDFYAPSVVLTTGTFMSD 223


>gi|257791163|ref|YP_003181769.1| gid protein [Eggerthella lenta DSM 2243]
 gi|257475060|gb|ACV55380.1| gid protein [Eggerthella lenta DSM 2243]
          Length = 477

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 160/491 (32%), Gaps = 51/491 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V ++G G AG EAA   A  G    L+  +  T   +        L   + ++      A
Sbjct: 17  VTIVGAGLAGSEAALQLADRGVRVRLVEMRPKTPTLVHVTGCCAELVCSNSLKSEKPDSA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +A+     +    +   PA  G     DR  +  A+   + +   +D++  EV
Sbjct: 77  AGMLKRELAELGSQLYAQAKLHAVPA--GGALAVDRTAFAEAVTALVEAHPLIDLVHEEV 134

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                      ++V+    +   S  +  + + L G  H+      A  +  + S     
Sbjct: 135 VDLVQAAEGADALVVAAGPL--ASDALAASLSRLAGEEHLAFYDAAA-PIVMADSLDYAK 191

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F +  ++      G     D     + + E           +F+ + +   ++     R
Sbjct: 192 LFRQSRYEDAAADAG-----DYLNAPFSREEYD---------AFVDELVGAERV----IR 233

Query: 245 TNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            + ET  +    + I+  A    D   +G      + D   R G R    + L  E  + 
Sbjct: 234 RDFETRDLFQACQPIEEIARKGHDAPRFGTLKPVGLTDP--RTGHRPWAALQLRAEDAHG 291

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK-- 359
                 G  T L    Q +  R IPGLE     R G      +++ P+ L  +L  +   
Sbjct: 292 SSYNLVGFQTNLTFPEQRRVFRLIPGLENAEFARYGVMHRNTFVDAPRLLDESLRLRSPE 351

Query: 360 ISGL----FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
              L     LAGQI GT GY EA   GL      A +          R ++  G ++   
Sbjct: 352 AERLGVPVHLAGQIAGTEGYCEAIRSGLHVAFAVAAELRGAQAPALPR-ETAFGALLAYA 410

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T   V +          + I          L P   ++    +R      +  +     +
Sbjct: 411 TDPAVKD---YQPMHVNFGI----------LPPFEQRIRNKRDRYAAYAERGAEALAAYK 457

Query: 476 SLLKSLVLTSK 486
           + L +  L   
Sbjct: 458 AELAARGLAPD 468


>gi|325832931|ref|ZP_08165604.1| tRNA:m(5)U-54 methyltransferase [Eggerthella sp. HGA1]
 gi|325485796|gb|EGC88260.1| tRNA:m(5)U-54 methyltransferase [Eggerthella sp. HGA1]
          Length = 508

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 160/491 (32%), Gaps = 51/491 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V ++G G AG EAA   A  G    L+  +  T   +        L   + ++      A
Sbjct: 48  VTIVGAGLAGSEAALQLADRGVRVRLVEMRPKTPTLVHVTGCCAELVCSNSLKSEKPDSA 107

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   +A+     +    +   PA  G     DR  +  A+   + +   +D++  EV
Sbjct: 108 AGMLKRELAELGSQLYAQAKLHAVPA--GGALAVDRTAFAEAVTALVEAHPLIDLVHEEV 165

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                      ++V+    +   S  +  + + L G  H+      A  +  + S     
Sbjct: 166 VDLVQAAEGADALVVAAGPL--ASDALAASLSRLAGEEHLAFYDAAA-PIVMADSLDYAK 222

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
            F +  ++      G     D     + + E           +F+ + +   ++     R
Sbjct: 223 LFRQSRYEDAAADAG-----DYLNAPFSREEYD---------AFVDELVGAERV----IR 264

Query: 245 TNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            + ET  +    + I+  A    D   +G      + D   R G R    + L  E  + 
Sbjct: 265 RDFETRDLFQACQPIEEIARKGHDAPRFGTLKPVGLTDP--RTGHRPWAALQLRAEDAHG 322

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKK-- 359
                 G  T L    Q +  R IPGLE     R G      +++ P+ L  +L  +   
Sbjct: 323 SSYNLVGFQTNLTFPEQRRVFRLIPGLENAEFARYGVMHRNTFVDAPRLLDESLRLRSPE 382

Query: 360 ISGL----FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
              L     LAGQI GT GY EA   GL      A +          R ++  G ++   
Sbjct: 383 AERLGVPVHLAGQIAGTEGYCEAIRSGLHVAFAVAAELRGAQAPALPR-ETAFGALLAYA 441

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
           T   V +          + I          L P   ++    +R      +  +     +
Sbjct: 442 TDPAVKD---YQPMHVNFGI----------LPPFEQRIRNKRDRYAAYAERGAEALAAYK 488

Query: 476 SLLKSLVLTSK 486
           + L +  L   
Sbjct: 489 AELAARGLAPD 499


>gi|302341709|ref|YP_003806238.1| gid protein [Desulfarculus baarsii DSM 2075]
 gi|301638322|gb|ADK83644.1| gid protein [Desulfarculus baarsii DSM 2075]
          Length = 463

 Score =  210 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 157/486 (32%), Gaps = 54/486 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---ALD 66
           VIGGG AGCEAA  AA+ G    LI  K + +     +P +  L   + +R      A+ 
Sbjct: 23  VIGGGLAGCEAALQAAEAGVQVRLIEMKPARMSPAHHDPRLAELVCSNSLRNDQPSSAVG 82

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +                PA  G     DR  +   + +++ +   + +I  E   
Sbjct: 83  LLKLELEIMGSRLMAAARQSAVPA--GKALAVDRGRFAELVDQQVRNHPRIKLIGQEAVA 140

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +   I             ++  LT G   + +               +P  +  +  
Sbjct: 141 PPEDAPCIL------------ASGPLTDGALAQWLAQRAGAAHLHFYDAIAPIVTRESVD 188

Query: 187 MKFDFDTGR-LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
           M   F   R  + G    L+         ++Q         +   +   +          
Sbjct: 189 MDHAFWGDRWAEPGQGDYLNCP------LDRQQWAAFYAALTAAENVALHD-------FE 235

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +          I+  A        +GP     +         R    + L  E     ++
Sbjct: 236 SPRFFE-GCLPIEVMAARGEQTLLFGPMKPVGLHRPGQ--PGRFHAVVQLRKEDAEGRLL 292

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T L  + Q +  R IP L      R G      +++ P+ L   +  +    +F
Sbjct: 293 NMVGFQTKLTHQSQLRVFRLIPALAHAEFARLGSIHRNSFVDAPRVLDAFMRLRTAPNVF 352

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           +AGQ+ G  GY E+ A GL+ G+N+AR       +    T + +G ++  L +    +  
Sbjct: 353 VAGQLAGVEGYVESMAAGLLCGLNAARLLKGQQPLRPPATTA-LGGLLAHLANDQTKD-- 409

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA-KYIQEYNFLRSLLKSLVL 483
                        +P N +  L P    LG     ++ R A    +    L + L    L
Sbjct: 410 ------------FQPSNVNFGLLP---PLGGKKIPKKDRGALLARRAMQDLLAWLGDQGL 454

Query: 484 TSKNLS 489
           T    +
Sbjct: 455 TPAKAA 460


>gi|237740651|ref|ZP_04571132.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 2_1_31]
 gi|229422668|gb|EEO37715.1| tRNA (uracil-5-)-methyltransferase Gid [Fusobacterium sp. 2_1_31]
          Length = 434

 Score =  210 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 172/490 (35%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKQKTPAHSKDYYSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  ++  VAD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLMKEELRILGSMLIEVAD----------RNRVPAGQALA--VDRDGFSEEITKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 MENIEIIEEEFTEIPEDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESINMDIAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   +  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--KTDKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            + L  +     +    G  T L    Q +    IPGLE    +R G      +IN  +L
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKL 321

Query: 352 FPTLETKKIS-GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
                  K    ++ AGQI G  GY  A A G+ A IN A + N           S IG 
Sbjct: 322 LDKTLKLKNKDNVYFAGQITGGEGYVTAIATGMYAAINVANRLNGEKEFVL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRRL 419

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 420 SQRAIEYLKK 429


>gi|302335677|ref|YP_003800884.1| gid protein [Olsenella uli DSM 7084]
 gi|301319517|gb|ADK68004.1| gid protein [Olsenella uli DSM 7084]
          Length = 441

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 139/429 (32%), Gaps = 44/429 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--DA 64
           +V VIGGG AG E A   A  G    L   +               L   + ++    D+
Sbjct: 4   EVTVIGGGLAGSECALQLASRGVRVTLFEQRPFHSSPAHHGAGFAELVCSNSLKSTRHDS 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             GL+       G  F +    +     G     DR  +   + + I  + N+ V++ EV
Sbjct: 64  AAGLLKEEITKMGS-FLIALAHRASVPAGGALAVDRGAFTDLVTQAIEGEGNISVVREEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                              M+  +   L +      +      +  +     +P      
Sbjct: 123 TTIP-------------GGMVVVAAGPLCSDALFGDLSRRLGAESLSFYDAAAPIVDAQT 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 F   R   G    L+      D+ E     + L+                 I  
Sbjct: 170 VDRSIAFVQSRYAEGGGDYLNCPM---DRDEYDAFYDALVAAK-------------RIVS 213

Query: 245 TNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            + E   +    + ++  A    D   +G      + D   R G R    + L  E +  
Sbjct: 214 KDFEQKDLFNACQPVEEVARTGRDSLRFGALKPVGLTDP--RTGRRPWAAVQLRAENVGR 271

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
                 G  T L    Q +  R IPGLE+ +  R G      +++ P+ L  T     I 
Sbjct: 272 TAYNLVGFQTNLSWGEQKRVFRMIPGLEEADFFRYGVMHRNSFVDAPRVLTDTF---AIP 328

Query: 362 G--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
              + LAGQI GT GY EA A GL+A +N+       + +    T + +G ++   T   
Sbjct: 329 HTQVRLAGQITGTEGYVEAIASGLLAALNTICDIRSAEHVDLPATTA-LGSLVRYATDPA 387

Query: 420 VLEPYRMFT 428
              PY+   
Sbjct: 388 TC-PYQPMH 395


>gi|229815417|ref|ZP_04445749.1| hypothetical protein COLINT_02465 [Collinsella intestinalis DSM
           13280]
 gi|229808950|gb|EEP44720.1| hypothetical protein COLINT_02465 [Collinsella intestinalis DSM
           13280]
          Length = 448

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 148/434 (34%), Gaps = 42/434 (9%)

Query: 2   INRSYD-VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +N S++ V VIGGG +G E A   A  G    L   +           ++  L   +  +
Sbjct: 1   MNMSFERVTVIGGGLSGSECACQLADRGVPVRLYEMRPDHSSPAHHTGSLAELVCSNSFK 60

Query: 61  E--IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              +D+  GL+       G    +   ++     G     DRE +   ++ E+  +  ++
Sbjct: 61  STRVDSAAGLLKEELRRMGSVL-IDCAERAAVPAGGALAVDRERFSALVEEEVARRSLIE 119

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           VI+ EV        +I             +   L +      V+ +      +     +P
Sbjct: 120 VIREEVVDIPEGPCVI-------------AAGPLCSPALSDKVLELVGGDALSFFDAAAP 166

Query: 179 SNSLFNSFMKFDFDTGRLKT-GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
                       F   R    G    L+     + K E     +  I      +++  + 
Sbjct: 167 IVDATTIDRSIVFTQSRYDEQGGGDYLNAP---FTKDEY----DAFIDALVGAERVVLKD 219

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
            E               +  +  A    D   +G      + D   R G R    + L  
Sbjct: 220 FE-------RRDLFQACQPAEEVARTGHDAIRFGAMKPVGLTDP--RTGRRPWAAVQLRS 270

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLE 356
           E          G  T L    Q +  R IPGLE     R G      +++ P+ L  +  
Sbjct: 271 ENAEGTAYNLVGFQTNLTFGEQKRVFRMIPGLENAEFFRYGVMHRNTFVDAPRVLDGSF- 329

Query: 357 TKKISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
              + G  + LAGQI GT GY EA A GL A +N+    +  D +    T ++ G ++  
Sbjct: 330 --AVPGTRVRLAGQITGTEGYTEAVASGLFAALNTFADLSSTDRVSLPLTGAF-GSLVAY 386

Query: 415 LTSKGVLEPYRMFT 428
            TSK  ++ Y+   
Sbjct: 387 ATSKDTVD-YQPMH 399


>gi|255018080|ref|ZP_05290206.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           F2-515]
          Length = 320

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 125/358 (34%), Gaps = 45/358 (12%)

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
            G     DR  +   +  ++ +   + V   EV        II             +T  
Sbjct: 1   AGGALAVDRHEFSGYITDKVKNHPLVTVHTEEVTTIPEGPTII-------------ATGP 47

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
           LT+      +  +   +        +P     +  M   +   R   G  A L+      
Sbjct: 48  LTSPALADEIKQLTGEEYLYFYDAAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM--- 104

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
            + E     E L+      +    ++ E  +         ++       A        +G
Sbjct: 105 SEEEFNAFYEALVTA----ETAALKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFG 153

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
           P     +ED   + G+R    + L  +     +    G  T L    Q +    IPGLE 
Sbjct: 154 PLKPVGLEDP--KTGKRPYAVLQLRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLEN 211

Query: 332 VNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSA 390
             I+R G      +IN P  L PT + K  + LF AGQ+ G  GY E+AA GL AGIN+A
Sbjct: 212 AEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAA 271

Query: 391 RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448
               + + + F  T++ IG +   +T              +  + S +P N +  L P
Sbjct: 272 NFVQEKELVVFP-TETAIGSLAHYIT--------------SASKKSFQPMNVNFGLFP 314


>gi|315037060|gb|EFT48992.1| tRNA:M(5)U-54 methyltransferase [Enterococcus faecalis TX0027]
          Length = 338

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 132/379 (34%), Gaps = 46/379 (12%)

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           L+     +++ S   + +   E+        II             +T  LT+ +  + +
Sbjct: 3   LFLKQSLKKLKSHPLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKI 49

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                 +        +P        M   +   R   G  A L         TE++F   
Sbjct: 50  QEFNGSEGFYFYDAAAPIIDKSTIDMDKVYLKSRYNKGEAAYL-----NCPMTEEEF--N 102

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                    + +  R  E            ++       A        +GP     +ED 
Sbjct: 103 AFHEALVNAEVVPLRTFEKEKFFEGCMPIEVM-------AQRGIKTMLFGPMKPVGLEDP 155

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
             + G+R    I L  +     +    G  T L    Q +  R IPGLE    +R G   
Sbjct: 156 --KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMH 213

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              ++N P+ L PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I 
Sbjct: 214 RNSFMNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIE 273

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGER 459
           F R  + +G M   +T                     +P NA+  L P +  ++    ER
Sbjct: 274 FPRETT-LGSMAYYITHAE--------------GKHFQPMNANFGLFPELPERIRDKKER 318

Query: 460 RQKRFAKYIQEYNFLRSLL 478
            +    + +     +   L
Sbjct: 319 YEAIANRALDVQAQVIQSL 337


>gi|94266015|ref|ZP_01289737.1| Gid protein [delta proteobacterium MLMS-1]
 gi|93453444|gb|EAT03863.1| Gid protein [delta proteobacterium MLMS-1]
          Length = 438

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 154/464 (33%), Gaps = 51/464 (10%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDALDGLMGRVADAAGI 78
              A+ G +  L   K  T      +  +  L   + +R      A+  L   +     +
Sbjct: 18  WQLARRGRAVTLYEMKPQTFSPAHHSAMLAELVCSNSLRAEGSHAAVGLLKEEMRQLGSL 77

Query: 79  QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
                +  + PA R      DRE +   +   + ++  + +I+ E+              
Sbjct: 78  IMAAADANRVPAGRALA--VDREKFAAWITARLEAEPLITIIRREITEIPPPGP------ 129

Query: 139 MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               + +  +   L        +  +      A     +P     +      F   R + 
Sbjct: 130 ----APLIIAAGPLAGSALSAALAGLIGADHLAFYDAIAPIVYADSLDPDIIFQASRYEE 185

Query: 199 GTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
           G    L+      D+ + Q         + +T      ++           +      I+
Sbjct: 186 GPGDYLNCP---LDRQQYQ---------TLLTALREAEKVPLHDF--EEPKYFEGCLPIE 231

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A    D   +GP     + D   R G      + L  E     +    G  T +    
Sbjct: 232 VMAARGDDTLRFGPMKPVGLVDP--RTGTTPYAVVQLRRENREGVLYNLVGFQTKMTHPA 289

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEE 377
           Q + +R IPGLEK    R G      ++N P+ L P+L+      + LAGQ++G  GY E
Sbjct: 290 QQRVLRLIPGLEKAEFARLGSIHRNTFVNAPRVLRPSLQLIARDDILLAGQLSGVEGYVE 349

Query: 378 AAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISL 437
           +AA GL+AG+N+AR +           +   G +I  LT           TS  E   + 
Sbjct: 350 SAAGGLLAGLNAARLAGGEQPTIPPA-ECAHGALIRHLT-----------TSAPE---TF 394

Query: 438 RPDNADNRLTP----IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
           +P N +  L P      +     GE R +   + +  +   R+ 
Sbjct: 395 QPSNINFGLFPPLEGKKIPKRLRGEHRAQIARQALAHWQQERNR 438


>gi|262067705|ref|ZP_06027317.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium periodonticum ATCC
           33693]
 gi|291378430|gb|EFE85948.1| tRNA:M(5)U-54 methyltransferase [Fusobacterium periodonticum ATCC
           33693]
          Length = 434

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 171/490 (34%), Gaps = 80/490 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 4   EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKSKQKTPAHSKDYYSELVCSNSLGSDSLEN 63

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  ++  VAD            + PA +      DR+ +   + + + +
Sbjct: 64  ASGLMKEELRILGSMLIEVAD----------RNRVPAGQALA--VDRDGFSEDITKILKN 111

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EN+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 112 MENIEIIEEEFTEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 159

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 160 DAAAPIVTFESINMNIAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 207

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   +  + +  
Sbjct: 208 KAERAEL----KNFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--KTDKMDYA 261

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            + L  +     +    G  T L    Q +    IPGLE    +R G      +IN  +L
Sbjct: 262 VVQLRQDDKEGKLYNIVGFQTNLKFGEQKRVFSMIPGLENAEFVRYGVMHRNTFINSTKL 321

Query: 352 FPTLETKKIS-GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
                  K    ++ AGQI G  GY  A A G+   IN A + N           S IG 
Sbjct: 322 LDKTLKLKNKDNVYFAGQITGGEGYVTAIATGMYTAINVANRLNGEKEFIL-EDISEIGA 380

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           +++ +T               E +   +P  A+  +      +  + E  + +  KY + 
Sbjct: 381 IVNYIT---------------EEKKKFQPMGANFGI------IRSLDENIRDKKEKYRRL 419

Query: 471 YNFLRSLLKS 480
                  LK 
Sbjct: 420 SERAIEYLKK 429


>gi|50365058|ref|YP_053483.1| tRNA (uracil-5-)-methyltransferase Gid [Mesoplasma florum L1]
 gi|81827314|sp|Q6F1M4|TMFO1_MESFL RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|50363614|gb|AAT75599.1| glucose inhibited division protein C [Mesoplasma florum L1]
          Length = 442

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 159/425 (37%), Gaps = 31/425 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V +IG G AGCEAA + A  G    L   K+     +     +G L   + +R     +
Sbjct: 4   EVNIIGAGLAGCEAAYLLANNGVKVNLFEVKSLMKNDIQKTNDLGELVCSNTLRSKSKKN 63

Query: 67  GLMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                  +   +   V+    +           DR  +   +  +I + +N+++I+ EV+
Sbjct: 64  AAGILKNEMKLLNSLVIKAALENEIPGDDALSVDRFGFSKYITDKIKNHKNINLIEQEVS 123

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             +  K  I             ++  LTT    + +  +   +        +P  +  + 
Sbjct: 124 EVDYTKVTII------------ASGPLTTDKLGKNIELMTGNEKLFFLDASAPIITKDSI 171

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                +   R   G     DG+ I     E+QF     +      + I  +  E  I   
Sbjct: 172 DFNKVYWASRHNDGK----DGQYICIPLNEEQF--NAFVEELKNAETIKLKSFEKEIYFK 225

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
             +    I       A  S  +   GP    ++ D+    G      + L  +     + 
Sbjct: 226 GCQPIEQI-------AKTSKKVLLNGPLSPNNLIDEN---GNTPFAVVQLRQDDAIDSLY 275

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLF 364
              G  T +    Q + ++T+PGLE +NI+R G   +  YIN PK L  +L+ K+   +F
Sbjct: 276 NFVGFQTNIKWPEQKRILQTLPGLENLNIVRFGVMHKNYYINSPKLLNRSLQVKRNKNIF 335

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
            AGQI G  GY E+A+ G++  IN     N +  I      S +G +   +T+    +  
Sbjct: 336 FAGQITGVEGYIESASSGILTAINVLAYLNNIK-IEQPSRKSMLGALNFYITNPKHDKLK 394

Query: 425 RMFTS 429
            M  +
Sbjct: 395 PMKCN 399


>gi|291286770|ref|YP_003503586.1| gid protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883930|gb|ADD67630.1| gid protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 431

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 156/484 (32%), Gaps = 76/484 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           V + GGG AGCEAA   A+ G    L           H+T  +G + C+ ++        
Sbjct: 5   VYIAGGGLAGCEAAYYLAERGHEVKLYEMRPLVQTPAHETEFLGELVCSNSLKSTLPDTS 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+  VA                   G     DR  +   +   I + 
Sbjct: 65  SGLLKEEMKILGSLVLAVAYQC------------QVPAGNALAVDRLDFAKGIDEIIRNH 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            +++VI  E+     ++  I  +  +  D    +          F   +           
Sbjct: 113 PHIEVISEELTDIPADRPCIIATGPLTSDKLAEKIKERFGGGLYFFDAI----------- 161

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  S  +  M+  F   R + G     D   +     ++Q+  E        ++K
Sbjct: 162 ----APVISFDSVDMEKAFFKSRWEKG-----DNDYLNLGMNKEQY--ELFYNEMMASEK 210

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
              +  E                             ++GP     +   +    E+    
Sbjct: 211 TEFKDFEKLNVYEGCMPIE-------EMGARGPQTLTFGPFRPVGLRHPV--TEEKYYAV 261

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKEL 351
           + L  E          G  T +    Q +  R IPGLE    +R G      YI+ P  L
Sbjct: 262 VQLRKENKEGTAYNLVGCQTKMKIPEQKRVFRLIPGLENAEFLRFGSIHRNTYIHSPGNL 321

Query: 352 FPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             T +T     L+ AGQI G  GY E+AA G++A  +                ++ +G +
Sbjct: 322 KRTFQTTADKDLYFAGQITGVEGYLESAASGILAAHSII-----YPEFEGFHEETALGAL 376

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQE 470
              ++ +            AE +    P N    + P  G K+     ++Q    + ++ 
Sbjct: 377 ARHVSGEV-----------AENKKEYVPSNFHFGMLPGHGEKIRDKKLKKQMYADRALEH 425

Query: 471 YNFL 474
           Y  L
Sbjct: 426 YKHL 429


>gi|83858667|ref|ZP_00952189.1| gid protein, hypothetical [Oceanicaulis alexandrii HTCC2633]
 gi|83853490|gb|EAP91342.1| gid protein, hypothetical [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/486 (19%), Positives = 168/486 (34%), Gaps = 48/486 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EID 63
           + +IGGG AG EAA  AA  GA   L   +            +  L   +  R    E +
Sbjct: 7   IHIIGGGMAGSEAAWQAANAGARVILHEMRPVRPTFAHQTGGLAELVCSNSFRSDDAETN 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +   + +  + PA  G     DRE +   +   I +  N+++++ E
Sbjct: 67  AVGLLHEEMRRAGSLIMAMGDKHQVPA--GGALAVDREAFSADVTAAIENHPNIEIVREE 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           +AG   E     S+++            LT+      V  +      A     +P     
Sbjct: 125 IAGLPPEDWD--SVIVATG--------PLTSPALAEAVHELSGEGELAFFDAIAPILYAE 174

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +  M   +   R   G         I     + Q+  E  +      DK   +  E    
Sbjct: 175 SINMDIAWKQSRYDKGDTEEDRAAYINCPMDKDQY--EAFVDALLAADKTEFKDWEKDTP 232

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNT 302
             +          I+  A    +   +GP     + +      + +    + L  +    
Sbjct: 233 YFDA------CLPIEVMAERGRETLRHGPMKPRGLTNAHD--PDTKPYAVVQLRQDNALG 284

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKIS 361
            +    G  T +    Q    + IPGLE  +  R G      +++ PK L   +  K   
Sbjct: 285 TLFNMVGFQTKMKYGAQTDVFKMIPGLENASFARLGGIHRNTFLHSPKLLDGVMRLKARP 344

Query: 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
            L  AGQI G  GY E+A+ GL+AG  +A +    + I      + +G ++  +T+  V 
Sbjct: 345 SLRFAGQITGVEGYVESASMGLLAGRFAAAEKLGRE-ISPPPPTTALGALLTHITTGHVP 403

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTP---------IGMKLGCIGERRQKRFAKYIQEYN 472
                       + + +P N +  L P          G +L    +   K+ A   +  +
Sbjct: 404 ----------GKKGAFQPMNVNFGLFPDIEAPTRDAEGKRLRGKDKSVAKKRAMSARALS 453

Query: 473 FLRSLL 478
            + + L
Sbjct: 454 DIDAWL 459


>gi|289805950|ref|ZP_06536579.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 157

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
           D PS  L     +      RLKTGTP R+D +TI +    +Q  D  +  FSFM +   +
Sbjct: 2   DPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNAFQH 61

Query: 236 RQ-IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            Q + C IT TN +TH +I  N+  S +Y+G I+  GPRYCPSIEDK++RF +RN HQIF
Sbjct: 62  PQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIF 121

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           LEPEGL ++ +YPNGIST+LP ++Q Q +R++ G
Sbjct: 122 LEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQG 155


>gi|298571315|gb|ADI87659.1| tRNA (uracil-5-)-methyltransferase Gid [uncultured Nitrospirae
           bacterium MY2-1F]
 gi|298571416|gb|ADI87757.1| tRNA (uracil-5-)-methyltransferase Gid [uncultured Nitrospirae
           bacterium MY3-11A]
          Length = 410

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 164/444 (36%), Gaps = 54/444 (12%)

Query: 35  THKTSTIGSMSCNPAIG----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            HKT  +G + C+ ++         G + +E++A   L+   A A               
Sbjct: 9   AHKTGLLGELVCSNSLRSDSTESAHGLIKQELEAAGSLIMAAARAT------------SV 56

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
             G     DR L+   +  +I +  N+ ++ GEVA  ++     S++++           
Sbjct: 57  PAGGCLAVDRNLFAEFITAKIRAHPNIKIVYGEVASLSSFDAK-SAVILATG-------- 107

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
            LT+ T    +  I   +        SP     +   +  F   R   GT        + 
Sbjct: 108 PLTSLTLAEELQKILGGQSLYFYDAISPIIDAESIDYEKAFFASRYGKGTGD----DYLN 163

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
              + +++  +         DK++ R  E            ++            D   +
Sbjct: 164 CPMSAEEY--DLFYNSLVNADKVSVRNFEDEKVFEGCMPIEVMAG-------RGKDTLRF 214

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           GP     + D   R   +    I L  E +        G  T L    Q    R +PGLE
Sbjct: 215 GPLKPVGLIDP--RTTLKPYAVIQLRAENIEKTSYNLVGCQTRLKYTEQSHVFRLVPGLE 272

Query: 331 KVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINS 389
           K   +R G      YI+ P+ L   L  K +  +F+AGQI G  GY E+ A GL+AGI +
Sbjct: 273 KAEFLRYGSIHRNTYIDSPRHLNKNLTLKSMPNIFIAGQITGVEGYLESTAMGLLAGIYT 332

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           ARK   LD +  SR  +  G +I+ +T  G  +P     S   + +          L P+
Sbjct: 333 ARKLRGLDEVLPSRYTA-CGSLIEHIT--GAAQPSTFQPSNINFGL----------LPPL 379

Query: 450 GMKLGCIGERRQKRFAKYIQEYNF 473
            + +    ++RQ   A+ + ++  
Sbjct: 380 SVPIRDKAKKRQAVVARALADWEA 403


>gi|167951232|ref|ZP_02538306.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 158

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 99/124 (79%)

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
           +  S +++G I+  GPRYCPSIEDK+VRF +++ HQIF+EPEGL+T  VYPNGIST+LP 
Sbjct: 1   MSRSPLFTGVIEGTGPRYCPSIEDKVVRFADKDSHQIFIEPEGLDTHEVYPNGISTSLPF 60

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE 376
           ++Q Q +R++ G  K +I RPGYAIEYD+ +P+EL  +LET  I+GLF AGQINGTTGYE
Sbjct: 61  DVQLQLVRSMKGFAKAHITRPGYAIEYDFFDPRELKSSLETNHIAGLFFAGQINGTTGYE 120

Query: 377 EAAA 380
           EAA 
Sbjct: 121 EAAG 124


>gi|221194483|ref|ZP_03567540.1| tRNA:M(5)U-54 methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185387|gb|EEE17777.1| tRNA:M(5)U-54 methyltransferase [Atopobium rimae ATCC 49626]
          Length = 449

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 161/490 (32%), Gaps = 49/490 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG E A   A  G    LI  + +             L   + ++       
Sbjct: 5   VTVIGAGLAGSECALQLAARGIEVLLIEQRPTKQSPAHHTSNFAELVCSNSLKSTKEESA 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                 + AG++  +L   +  A   G     DRE +   +   I S   + V + E   
Sbjct: 65  AGILKRELAGMKSFLLQFAQDTAVPAGGALAVDREKFSSMVTAAISSNPLIRVERREAVE 124

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E  +I++  +  +S+    +  L T                +     +P  +  +  
Sbjct: 125 IPAEPCVIAAGPLCSDSLYDAISQRLGTH-------------RMSFYDAAAPIIAADSID 171

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R   G      G  +     + ++              I      C +    
Sbjct: 172 RSIVFAQSRYSEGEK----GDYLNCPLNKDEYG-----------MFIQELLAACRVVSHE 216

Query: 247 LETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            E   +    + I+  A    D   +G      + D   R G R    + L  E  +   
Sbjct: 217 FEQRDLFQACQPIEEVARTGVDSLRFGALKPVGLTDP--RDGRRPWAAVQLRAENADATA 274

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGL 363
               G  T L    Q +    IPGL +   +R G      +++ P  L P+      + +
Sbjct: 275 YNLVGFQTNLVWGEQRRVFSMIPGLGEAEFLRYGVMHRNSFVDAPHALTPSF-AIPHTHI 333

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
            LAGQ+ GT GY EA A GL+A +N+         IC  +T + +G ++   T     E 
Sbjct: 334 RLAGQLTGTEGYVEAIASGLLAALNTYADLIAAPEICLPKTGA-LGSLVSYATDPNTKE- 391

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                    + +            P+  ++    ERR++   +  ++++   S    + +
Sbjct: 392 --YQPMHVNFGL----------FPPLDEEIKKKDERRRRMTQRAQRDFDEYLSTRHDIFV 439

Query: 484 TSKNLSSTSI 493
              +   T++
Sbjct: 440 LEGDALVTNL 449


>gi|306840388|ref|ZP_07473153.1| gid protein [Brucella sp. BO2]
 gi|306289626|gb|EFM60830.1| gid protein [Brucella sp. BO2]
          Length = 433

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 142/458 (31%), Gaps = 54/458 (11%)

Query: 35  THKTSTIGSMSCNPAIGG-----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            HKT  +  + C+ +           G L  E+     L+   ADA              
Sbjct: 13  AHKTEQLAELVCSNSFRSDDAETNAVGVLHAEMRLAGSLIMACADAH------------Q 60

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCST 149
              G     DRE +  A+   + +   + + + E+ G    +   + I            
Sbjct: 61  VPAGGALAVDREGFSQAVTARLEAHPLITIEREEITGLPPAEWGTAIIAT---------- 110

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
             LT       +         A     +P     +  M   +   R     P       I
Sbjct: 111 GPLTAPPLAEAIAAETDADALAFFDAIAPIIHFDSINMDVCWFQSRYDKVGPGGTGKDYI 170

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRI-IMENIKHSAIYSGDIK 268
                ++Q+  E  +      DK   ++           T        I+  A    +  
Sbjct: 171 NCPMDKEQY--EAFVAALIEGDKTDFKEW--------EGTPYFDGCLPIEVMAERGPETL 220

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
            +GP     + +       +    + L  +     +    G  T L    Q    + IPG
Sbjct: 221 RHGPMKPMGLTNAHNPTV-KPYAVVQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIPG 279

Query: 329 LEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGI 387
           LE     R G      Y+N P  L   L  K    L  AGQ+ G  GY E++A GL+AG 
Sbjct: 280 LENAEFARLGGLHRNTYLNSPVLLDNVLRLKSRQTLRFAGQVTGCEGYVESSAIGLLAGR 339

Query: 388 NSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT 447
            +A +      +    T ++ G ++  +T   ++      T     + S +P N +  L 
Sbjct: 340 FTAAEKLGQAAVPPPPTTAF-GALLGHITGGHIV------TDDEPGKRSFQPMNVNFGLF 392

Query: 448 PI-------GMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           P        G +L    +   K+ A   +     R+ L
Sbjct: 393 PPVDVPKPEGKRLRGKEKTVAKKRALSARALADCRNWL 430


>gi|94502335|ref|ZP_01308807.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
 gi|94451112|gb|EAT14065.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
          Length = 156

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 92/156 (58%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDVIV+GGGH+G EAA  A+ LG++T LIT     IG MSCNPA+GG+ KG +++
Sbjct: 1   MFVKQYDVIVVGGGHSGSEAALAASNLGSNTLLITTNLYNIGQMSCNPAMGGIAKGQMIK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDAL G  G + D + IQFR+LN  KGPA+  PR Q DR  +    +  +  ++NL   
Sbjct: 61  EIDALGGYSGIITDKSMIQFRMLNKSKGPAMWSPRAQCDRLKFSKEWRLTLEKKKNLSFF 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           Q  V     +   +  +       I+  +V+LT GT
Sbjct: 121 QSTVVDLIIKNYKVIGVKTILGIYIKSKSVILTNGT 156


>gi|308234476|ref|ZP_07665213.1| gid protein [Atopobium vaginae DSM 15829]
 gi|328944069|ref|ZP_08241534.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492038|gb|EGF23812.1| tRNA:M(5)U-54 methyltransferase [Atopobium vaginae DSM 15829]
          Length = 474

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/487 (18%), Positives = 149/487 (30%), Gaps = 72/487 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---A 64
           V +IG G AG E A   A       L   K S +     +P    L   + ++ +    A
Sbjct: 5   VTIIGAGLAGSECALQLAARHIYVDLYDMKPSKMSPAHHSPNFAELVCSNSLKSLKLESA 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L   ++       +     + PA  G     DR+++   +   +     + +   EV
Sbjct: 65  AGLLKHELSMLGSYLVKFAFQAQVPA--GGALAVDRDVFSRLVTCALEQNPFITIHHQEV 122

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                   +I             +   L +      +I        +     +P   + +
Sbjct: 123 VDIPQGNVVI-------------AAGPLCSDALFNQLISYLGSSSLSFFDAAAPIVDVES 169

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS------FMTDKITNRQI 238
                 F   R            +   D       D    PF+      F  + I  ++ 
Sbjct: 170 INFDLVFKQSRY---------AHSCACDTQSAAQGDYLNCPFTKDGYLAFYHELINAKRA 220

Query: 239 ECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDK-------IVRFGE-- 287
                  + E   +    + ++  A    D   +G      I          I   G   
Sbjct: 221 ----ISKDFEQKDLFSACQPVEEVARTGVDSLRFGALKPVGISYPKNHPHLHINTSGAAF 276

Query: 288 -RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
            R      L  E          G  T L    Q +  R IPGLE+    R G      ++
Sbjct: 277 TRPYAVCQLRSENSQRTAYNLVGFQTNLLWGEQKRVFRMIPGLEEAEFFRYGVMHRNSFV 336

Query: 347 N-PKELFPTLETKKISG--LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSR 403
           + PK L  T    KI    + L GQI GT GY EA A GL A +N+  +      I    
Sbjct: 337 DAPKCLDTTF---KIPHTKIRLTGQITGTEGYTEAIASGLFAALNTYCELMDHPSIQLPV 393

Query: 404 TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE-RRQK 462
           T ++ G ++   T+                  + +P + +  L P+ ++     +  R K
Sbjct: 394 TGAF-GSLVAYATNPQTS--------------TYQPMHVNFGLMPV-LEHRIKSKVDRYK 437

Query: 463 RFAKYIQ 469
            +A   +
Sbjct: 438 AYALRAE 444


>gi|257063754|ref|YP_003143426.1| tRNA:m(5)U-54 methyltransferase [Slackia heliotrinireducens DSM
           20476]
 gi|256791407|gb|ACV22077.1| tRNA:m(5)U-54 methyltransferase [Slackia heliotrinireducens DSM
           20476]
          Length = 452

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 157/486 (32%), Gaps = 50/486 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++ D+I  G G AG EAA   A+ G    L   +      +        L   + ++ 
Sbjct: 1   MNKTVDII--GAGLAGSEAALQLAQRGVHVRLFEMRPQVKTPVHKTDGCAELVCSNSLKS 58

Query: 62  IDALDGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           +          ++  A     +          G     DR+ +       + +   ++ +
Sbjct: 59  MKPQSAAGMLKSELKALGSNLIGFAYDSKVDAGGALAVDRDEFSRLTTEAVRNHPLIEYV 118

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GEVA  +       ++V+            LT+      V      +  A     +P  
Sbjct: 119 VGEVAEPDFTDG-ADAVVLASG--------PLTSDALAAWVSEKTGSENMAFYDAAAPIV 169

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
              +  M   F   R +   P    G  +    T +Q+        +F+ + +   ++  
Sbjct: 170 MADSLNMDVLFRQSRYEDEAP----GDYLNAPFTREQYD-------AFIDELVAADRV-- 216

Query: 241 GITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE 298
              R + ET  +    + I+  A    D   +G      + D     G R    + L  E
Sbjct: 217 --IRRDFETKDLFQACQPIEEIARKGHDAPRFGTCKPVGLTDPA--TGRRPWAAVQLRAE 272

Query: 299 GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET 357
                     G  T L    Q +    IPGLE    +R G      +I  P  +  +L  
Sbjct: 273 NAQNTAYNLVGFQTNLTFPEQKRVFSMIPGLENAEFVRYGVMHRNTFIQAPGLVERSLRL 332

Query: 358 KKISG---LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           K +     +F+AGQ++GT GY EA   GL+  +N     N ++      T ++ G ++  
Sbjct: 333 K-VETPAPVFVAGQLSGTEGYCEAIMSGLMCALNVYALLNGIEMPAMPETTAF-GSLLAY 390

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
            T     +          + I          L P+         R ++   +  Q     
Sbjct: 391 ATDPQTED---YQPMHVNFGI----------LPPLEHHERNKKLRYEQYAQRGGQAMEAY 437

Query: 475 RSLLKS 480
              L+ 
Sbjct: 438 VEKLRE 443


>gi|260655113|ref|ZP_05860601.1| tRNA:M(5)U-54 methyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260630224|gb|EEX48418.1| tRNA:M(5)U-54 methyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 444

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 68/485 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLGK--- 55
           V V+GGG AG EAA   A+ G +  L+  +            +G + C+ ++G  G+   
Sbjct: 5   VTVLGGGLAGSEAAWQLARRGWNVTLVEMRPVRSTEIHVSDRLGELVCSNSLGADGRNPA 64

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L  E+     L+   AD   +              G     DR  +   +   + S  
Sbjct: 65  GLLKDELRTFGSLIMEAADQTAV------------PAGKALAVDRTAFSAFITERLSSLP 112

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           ++ + + E             +++     +   ++       L G+       +    + 
Sbjct: 113 SVVIERREAVTLPEGP-----VILATGP-LTSPSLSDALSEALGGLDLYFYDAVA--PVV 164

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            + S  +   + +     G  ++GT   L+         E++  D + +      ++   
Sbjct: 165 AAESLDMAVIYRR--DRWG--ESGTGDYLNCP------MEREEYD-QFVAALTSAERALL 213

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFL 295
              E            +        A        +GP     +E      G R    + L
Sbjct: 214 HDFEKPRYFEGCMPVEV-------LASRGPQTLRFGPMRPVGLERPD---GSRPYAVVQL 263

Query: 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTL 355
             E  +       G  T L  + Q +    IPGL     +R G      Y++       L
Sbjct: 264 RAETADQRSYNLVGFQTNLKWKEQARVFSMIPGLGHAEFLRYGVMHRNSYVDAPRCLNKL 323

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
                  +++AGQ++G  GY E+ A GL A +     +   + + +   ++  G ++  L
Sbjct: 324 RLNGRPDVWIAGQLSGVEGYVESCAMGLAAALELDALTGGRESVPWPE-ETATGALLARL 382

Query: 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR 475
             +                   +P N +  + P          R  K  A Y +    L 
Sbjct: 383 ADQT--------------GKRFQPVNVNRGIFPPLDDAPKRASREDKAQAVYRRGITALA 428

Query: 476 SLLKS 480
            +L+S
Sbjct: 429 EMLQS 433


>gi|47219742|emb|CAG12664.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 250

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLG 454
           +  +  SRT+SYIGV+IDDL  +GV EPYRMFTSRAE+R +LRPDNAD RL+  G  ++G
Sbjct: 1   MPAVTLSRTESYIGVLIDDLVCRGVTEPYRMFTSRAEFRTALRPDNADLRLSLKGFEEVG 60

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTR---TAYEFLSYP 511
           C+   R +   +         + L+ L +++     T              +    L Y 
Sbjct: 61  CVSSERYQEALRVKNSLGEALAALQDLTMSTHKWRKTLPEVHISDAKAAVLSGLAVLQYN 120

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
             S Q L S  PD  +  S   +RL+IE+ Y  +   Q  E + I+ EE   +P+D DY 
Sbjct: 121 QVSYQMLASCFPDVLRPFSEFSQRLKIEAVYKPHCDHQKKEIERIQKEENMSLPQDIDYF 180

Query: 572 SLP-ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           SLP +LS E++E L  ++P  L  A++++G+TPAA+  LL Y+     +   
Sbjct: 181 SLPVSLSQEVREILDRVRPSTLGAATRLQGITPAAIVHLLNYVTHRNGQSTA 232


>gi|301166609|emb|CBW26185.1| protein Gid homolog [Bacteriovorax marinus SJ]
          Length = 455

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 142/443 (32%), Gaps = 56/443 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M      V+VIG G AGC+AA   A  G    L+           K  T   + C  ++ 
Sbjct: 1   MKFEGQKVLVIGAGLAGCDAAMFLASRGVKVVLVECKTLFLNPAQKMKTYAELVCTNSLK 60

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
            +    G G L  E++A+   +        +              G     +RE +  A+
Sbjct: 61  SMSPDTGHGLLKYEMNAMGSYILSKGMEYAV------------PAGDALAVNREEFSAAI 108

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + +   EN+++   E A             ++      C+  ++ TG      +     
Sbjct: 109 TKGLHEHENIEIFAEEAAN-----------PLELQKRFECAYTIVATGPLTTEKLEKWLT 157

Query: 168 KI-----PAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           +             +P        + K  F     +           +     ++Q+  E
Sbjct: 158 QDLTEEDFYFYDAIAPVVDADTLDYSKLYFKDRHKELSEEEGESADYLNAPMNKEQY--E 215

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
             I       K+  +  E      +     I+ E          D   +       +E  
Sbjct: 216 DFIAELVNAQKVPAQNFEDYKFFESCLPVDIMAE-------RGVDTARFSCMKPIGLEKS 268

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
               G      + L  E L        G  T L  + Q +  R IPG E+ + I  G   
Sbjct: 269 D---GTLPYACVQLRKENLLGSAFNLVGFQTRLTYKEQVRVFRKIPGFEEASFIHLGSVH 325

Query: 342 EYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              ++N K+L    L +KK   +  AGQI G  GY E+A+ GL A     RK      + 
Sbjct: 326 RNSFLNSKKLLNFDLSSKKYETIHFAGQITGVEGYTESASMGLYAAWQVLRKLEGKAPVQ 385

Query: 401 FSRTDSYIGVMIDDLTSKGVLEP 423
           +      +G +++ + +     P
Sbjct: 386 WPVDTG-VGALVNYIMTVPKPSP 407


>gi|322434482|ref|YP_004216694.1| gid protein [Acidobacterium sp. MP5ACTX9]
 gi|321162209|gb|ADW67914.1| gid protein [Acidobacterium sp. MP5ACTX9]
          Length = 446

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 157/480 (32%), Gaps = 45/480 (9%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDALD 66
           +IGGG AG EAA  AA  G    L   + +             L   + ++   E  A  
Sbjct: 6   IIGGGLAGPEAALQAAAAGCHVELYEMRPTRSTEAHQTSDFAELVCSNSLKSESENSAPW 65

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L   +  A  +     +    PA        DR  +   +   + S   + + + EV  
Sbjct: 66  LLKQEMRRAGCVLLAEADASAVPAGHALA--VDRVAFSARVAARLESNPLITIHREEVTT 123

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            N             +  I   +  LT+      +  I   +  A     SP        
Sbjct: 124 LNA---------TDADLTILA-SGPLTSAPLAAALQQITGSEQLAFYDSISPIVDATTID 173

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
           M   +   R   GT   ++     + K E +   + L     +  K   +          
Sbjct: 174 MDKVYFAARWDKGTADYINCP---FTKEEYETFMDALTSAENVQAKEWEKLD-------- 222

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
              +      I+ +A    D   +GP     + +   + G      + L  E L  D   
Sbjct: 223 ---YFEGCLPIEETARRGRDTLRFGPMKPAGLTNP--KTGRWPYACVQLRQENLRADSYN 277

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G    L    Q + +R IPGLE    +R G      YI+ P  L  TL+ +    + +
Sbjct: 278 LVGFQNHLKFGEQARVLRLIPGLEHATFLRYGQIHRNTYIHAPSLLTETLQLRARPDILI 337

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ++G  GY E+ A G++AG  +A        +   R  ++ G +I  +T         
Sbjct: 338 AGQLSGVEGYTESIASGMLAGQFAAALLAGRTPVPCPRLTAH-GSLIHYITHAE------ 390

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMK--LGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
               R +     +P N    L P   +     I +++++   +  +     +       L
Sbjct: 391 ---DRGKGNR-FQPANITFDLLPPLEEDLRKKIRDKKERHRIQCERALTAWQQWRTQTTL 446


>gi|58257976|gb|AAW69383.1| glucose-inhibited division protein [Hydrogenothermus marinus]
          Length = 160

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 8/158 (5%)

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI--------TNRQIECGITRTN 246
           ++KTGTPARLD  TI W   E+   DE    FSF T+ +           Q+ C IT TN
Sbjct: 2   QIKTGTPARLDKNTINWSVLEEAPGDEIPPKFSFWTEPVGSYFFKKGQKDQVPCYITYTN 61

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
            +TH II  N+  +A+Y G I   GPRYCPSIEDKIV+F  +  H ++LEPE  +   +Y
Sbjct: 62  EKTHEIIKNNLHRTALYGGAITGVGPRYCPSIEDKIVKFEGKPRHTVWLEPETRDGISIY 121

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
           PNG+ST+LPEEIQ +  R+I GLE V +++P +AIEY+
Sbjct: 122 PNGLSTSLPEEIQWEMYRSIKGLENVVLLKPAHAIEYE 159


>gi|217979041|ref|YP_002363188.1| tRNA (uracil-5-)-methyltransferase Gid [Methylocella silvestris
           BL2]
 gi|217504417|gb|ACK51826.1| gid protein [Methylocella silvestris BL2]
          Length = 471

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 144/434 (33%), Gaps = 39/434 (8%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG----RVADAAG 77
              A+ GA   L   +               L   +  R  D     +G     +     
Sbjct: 22  WQIARAGAPVVLHEMRPVRQTPAHRTGDFAELVCSNSFRADDPQTSAIGMLHREMRGLDS 81

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           +     ++ K PA  G     DR+ +  A+   I +   ++V+  E+AG         ++
Sbjct: 82  LIMSAADLHKLPA--GGALAVDRDGFSRAITERIRACPLIEVVCEEIAGLPPADWD--NV 137

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           ++            LT+      +  +   +  A     +P     +  M   +   R  
Sbjct: 138 IIATG--------PLTSQALGAAIGALTGERDLAFYDAIAPVVHRESVDMSKAWMQSRYD 189

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRI-IMEN 256
              P       I     ++Q+       ++F+       +IE    +T  ET        
Sbjct: 190 KAGPGGSGADYINCPLNKEQY-------YAFVDALNEAEKIE---FKTFEETPYFDGCLP 239

Query: 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIFLEPEGLNTDVVYPNGISTALP 315
           I+  A    +   +GP     + +      + +    + L  +     +    G  T L 
Sbjct: 240 IEIMAERGAETLRHGPMKPFGLTNPHE--PDVKAYAVVQLRQDNALGTLYNMVGFQTKLK 297

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG 374
              Q    R IPGLE+    R G      ++N PK L      +    L  AGQI G  G
Sbjct: 298 HGAQIAVFRAIPGLERAEFARLGGLHRNTFLNSPKVLDSAFRLRAQPRLRFAGQITGCEG 357

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           Y E+AA GLV G  +A   +  +        + +G +I+ +T+  + E      S     
Sbjct: 358 YVESAAIGLVVGRMAAADRSG-EAFLPPPATTALGALINHITAGHI-ETIDAGPS----- 410

Query: 435 ISLRPDNADNRLTP 448
            S +P N +  L P
Sbjct: 411 -SFQPMNVNFGLFP 423


>gi|261417251|ref|YP_003250934.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373707|gb|ACX76452.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327075|gb|ADL26276.1| gid protein [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 443

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 139/459 (30%), Gaps = 44/459 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG AGCEAA   A  G    L   + +       +  +  L   +  + +     
Sbjct: 5   VRVIGGGLAGCEAALQLASRGFQVDLYEMRPNRQTPAHRDGHLAQLVCSNSFKALGITSA 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                A+   +   +L+  +  A   G     +R+++   ++++I    N+ + + EV  
Sbjct: 65  HGLLKAELTLLGSYLLDCAREAAVPAGDSLTVNRDIFSELVEKKIAEFPNITLHREEVTS 124

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              +                 +   L +      +               +P     +  
Sbjct: 125 LEGD------------CPTLVAAGPLASDALADDIFKRLGSNRLHFFDAIAPVVETDSID 172

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R + G  A      I     ++ +             +  N+  E   T   
Sbjct: 173 FDHAFYMNRWEKGETA----DFINCPLDKETY------------TEFVNKLCEAEATEPR 216

Query: 247 LETHRIIMENI---KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
               R + E     +  A    +   +GP     +   +   G      I L  E     
Sbjct: 217 PFEKRELFEGCLPVEEMARRGYETLRHGPMRPIGL--GLGNNGHLWYAVIQLRAENKQKT 274

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET----- 357
           +    G  T L    Q +    +P L      R G      +I  PK L  TL       
Sbjct: 275 LFNMVGFQTRLKWGTQKEIFTMVPALRNAKFARLGCMHRNTFIESPKFLDKTLRLRPELD 334

Query: 358 --KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415
             K I   + AGQI G+ GY EA A G  A  N A+             +S IG +++ L
Sbjct: 335 CAKDIPPTWFAGQITGSEGYTEAVATGWYAAWNMAQTILHGHADPLPD-ESCIGSLMNRL 393

Query: 416 TSKGVL-EPYRMFTSRAEYRISLRPDNADNRLTPIGMKL 453
             +    +P         +   L+  N    L     + 
Sbjct: 394 VEENEDFQPMNFNFGLLPHHEGLKKKNKKEILAERAERA 432


>gi|257430599|ref|ZP_05606981.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278727|gb|EEV09346.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 289

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 119/326 (36%), Gaps = 64/326 (19%)

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGR------------LKTGTPARLDGKTIIWDKTEKQ 217
            A  + +  S  +   ++K  +D G                   A L+ +    +  EK+
Sbjct: 14  AAAPIIEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEAAPVNSFEKE 73

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
              E  +PF  M ++                                     +GP     
Sbjct: 74  KYFEGCMPFEVMAER-------------------------------GRKTLLFGPMKPVG 102

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
           +ED   + G+R    + L  +     +    G  T L    Q + I+ IPGLE V+I+R 
Sbjct: 103 LEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIKLIPGLENVDIVRY 160

Query: 338 GYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKL 396
           G      +IN P  L    E      +  AGQ+ G  GY E+AA GLVAGIN A K    
Sbjct: 161 GVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEGYVESAASGLVAGINLAHKILGK 220

Query: 397 DCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCI 456
             + F R ++ IG M   +             S A+   + +P NA+  L P  ++    
Sbjct: 221 GEVVFPR-ETMIGSMAYYI-------------SHAKNNKNFQPMNANFGLLP-SLETRIK 265

Query: 457 G-ERRQKRFAKYIQEYNFLRSLLKSL 481
             + R +  A   +  ++L +  K+L
Sbjct: 266 DKKERYEAQAN--RALDYLENFKKTL 289


>gi|309807517|ref|ZP_07701474.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           01V1-a]
 gi|308169244|gb|EFO71305.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           01V1-a]
          Length = 341

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 117/374 (31%), Gaps = 54/374 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+ V   E+               +D   I   T  LT+ +    +      +      
Sbjct: 113 PNVHVHNEEIKDIP-----------KDGINIIA-TGPLTSDSLATKIKEFCGSESLHFFD 160

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P  +  +      +   R   G  A L          ++QF +       F  + IT
Sbjct: 161 AAAPIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNLIT 208

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
               E      N          I+  A        +GP     +ED   + G+     + 
Sbjct: 209 AETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQ 264

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKELFP 353
           L  +  +  +    G  T L    Q +    IPGL     +R G      YI +P+ L  
Sbjct: 265 LRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNS 324

Query: 354 TLETKKISGLFLAG 367
           T ETK    LF  G
Sbjct: 325 TYETKLCENLFFCG 338


>gi|328955477|ref|YP_004372810.1| gid protein [Coriobacterium glomerans PW2]
 gi|328455801|gb|AEB06995.1| gid protein [Coriobacterium glomerans PW2]
          Length = 443

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 148/451 (32%), Gaps = 66/451 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           MI+    V VIG G AGCE A   A  G +  L           H T  +  + C+ +  
Sbjct: 1   MIHEK--VSVIGAGLAGCECALTLADRGVAVQLYEMRPRRSSPAHHTDRLAELVCSNSFK 58

Query: 52  GL----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G L  EI  L   + + A+ A I              G     DR+ +   +
Sbjct: 59  ATRRDSAAGLLKEEIRRLGSHLLKCAEQASI------------PAGGALAVDRQRFSELV 106

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           + EI S   ++V++ EV        +I             +   L +      V  +   
Sbjct: 107 EAEIASHRAIEVVRREVCSIPAGPVVI-------------AAGPLCSPALAEAVRDLVGA 153

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +  +     +P        M   F+  R +      L+               +R    +
Sbjct: 154 ESLSFFDAAAPIVDASTLDMDVLFEQSRYERAGGDYLNAPL------------DRRSYEA 201

Query: 228 FMTDKITNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           F+T+ I   ++       + E   +    +  +  A    D   +G      + D   R 
Sbjct: 202 FITELIGADRVNL----RDFERKELFQACQPAEEVARSGRDAIRFGAMKPVGLIDP--RT 255

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G R    + L  E          G  T L    Q +  R +PGL      R G      +
Sbjct: 256 GARPWAVLQLRAENAARSAYNLVGFQTNLTFPEQKRVFRMVPGLGHAEFFRMGVMHRNTF 315

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           ++ P  L  +    +   + LAGQI GT GY EA A GL+AG+N+         +    +
Sbjct: 316 VDAPHVLDSSFAVPETQ-VRLAGQITGTEGYTEAIASGLLAGLNTFCDLAGAQRVHLPVS 374

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
            + +  ++   T    +   R       + +
Sbjct: 375 GA-LASLVGYATDPATV---RYQPMHVNFGL 401


>gi|94502427|ref|ZP_01308869.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
 gi|94451015|gb|EAT13998.1| glucose-inhibited division protein A [Candidatus Sulcia muelleri
           str. Hc (Homalodisca coagulata)]
          Length = 212

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 15/219 (6%)

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
              R ++YIGV+IDDL  KG  EPYRMFTSRAEYRI LR DNAD RLT +G+ LG +   
Sbjct: 1   ILKRNEAYIGVLIDDLIYKGTEEPYRMFTSRAEYRILLRQDNADERLTHMGINLGLVSYD 60

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLF 519
           R       I++        K   L  K   + ++  K++ K       LS P+ SI ++ 
Sbjct: 61  R-------IKKLKNKNKNKKQCFLFFKINKANNLILKENIKICD---LLSRPEISIYDII 110

Query: 520 SI-----CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP 574
            +               ++E++ +   Y  Y  ++    K++   E   IP DFDY+ + 
Sbjct: 111 KLSLIKNFIKKNNIDKKILEQISLYIKYKGYLLKEEENVKKMYRLETIRIPNDFDYNQVK 170

Query: 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYI 613
           ++S E +EKL   KP ++ +AS+I G++P+ + +L++++
Sbjct: 171 SISIEAREKLLNYKPNSIGEASRISGVSPSDIRILILFL 209


>gi|167465453|ref|ZP_02330542.1| Gid [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 314

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 113/309 (36%), Gaps = 33/309 (10%)

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D   +   +  LT+      +  +   +        +P     +  M   +   R   G 
Sbjct: 1   DGITVVA-SGPLTSPGLSERLRSLMGEEYLYFYDAAAPIVEKDSIDMSKVYLASRYDKGE 59

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
            A L         TE++F  +         +    +  E  I         ++M+  K +
Sbjct: 60  AAYL-----NCPMTEEEF--DAFHEALTEAEVAPIKDFEKEIYFEGCMPIEVMMKRGKQT 112

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A+Y       GP     + +     G+     + L  +     +    G  T L    Q 
Sbjct: 113 ALY-------GPMKPVGLINP--HTGKLPYAVVQLRQDNAAGTLYNLVGFQTHLKWGEQK 163

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +    IPGLE    +R G      +IN PK L PT + K    LF AGQ+ G  GY E+A
Sbjct: 164 RVFSMIPGLENAEFVRYGVMHRNTFINSPKLLEPTYQFKHRPSLFFAGQMTGVEGYVESA 223

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           A GL+AGIN+AR +    C+ F R ++ +G M   +T+                    +P
Sbjct: 224 ASGLIAGINAARLAKGESCLTFPR-ETALGGMAHYITTADSKH--------------FQP 268

Query: 440 DNADNRLTP 448
            NA+  L P
Sbjct: 269 MNANFGLFP 277


>gi|218459055|ref|ZP_03499146.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli Kim 5]
          Length = 319

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 110/350 (31%), Gaps = 49/350 (14%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCS 148
              G     DR+ +  A+ + I     + V++ EV G       ++ +      +    S
Sbjct: 3   VPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEVTGLPPRDWDLAIVATGPLTAPSLAS 62

Query: 149 TVVLTTGTFLRGVI-----------HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
            +   TG                      +     R            ++    D  +  
Sbjct: 63  AIQAQTGEDSLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYN 122

Query: 198 TGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENI 257
               A + G T+ + + E     +  +P   M ++                         
Sbjct: 123 AFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAER------------------------- 157

Query: 258 KHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
                   +   +GP     + +       +    + L  +     +    G  T L   
Sbjct: 158 ------GRETLRHGPMKPMGLTNAHNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYG 210

Query: 318 IQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE 376
            Q +  R IPGLE     R G      YIN P  L P+L  K   GL  AGQI G  GY 
Sbjct: 211 AQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYV 270

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV---LEP 423
           E+A+ GL+AG  +A +    + I      + +G ++  +T   +    EP
Sbjct: 271 ESASVGLMAGRFAAAERKG-EAILLPPATTALGSLLGHITGGHIVSDEEP 319


>gi|75763958|ref|ZP_00743585.1| Glucose inhibited division protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488551|gb|EAO52140.1| Glucose inhibited division protein A [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 252

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 32/255 (12%)

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRI 252
             R   G  A L         TE++F  +R        + +  ++ E  I         +
Sbjct: 7   KSRYDKGEAAYL-----NCPMTEEEF--DRFYEALIAAETVPLKEFEKEIFFEGCMPVEV 59

Query: 253 IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIST 312
           +       A        +GP     +ED   + G+     + L  +     +    G  T
Sbjct: 60  M-------ASRGRQTLVFGPMKPVGLEDP--KTGKTPYAVVQLRQDDAAGTLYNIVGFQT 110

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQING 371
            L    Q + ++ IPGLE   I+R G      +IN P  L PT + K+   LF AGQ+ G
Sbjct: 111 HLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAGQMTG 170

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
             GY E+AA GL+AGIN+AR     + +      +  G M + +T              A
Sbjct: 171 VEGYVESAASGLLAGINAARLVQGEEPVVLPSVTAM-GSMANYIT--------------A 215

Query: 432 EYRISLRPDNADNRL 446
               + +P NA+  L
Sbjct: 216 TNAKNFQPMNANFGL 230


>gi|227553451|ref|ZP_03983500.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
 gi|227177427|gb|EEI58399.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
          Length = 242

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 20/255 (7%)

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           F+   + + N ++    T    +        I+  A        +GP     +ED   + 
Sbjct: 5   FNAFHEALVNAEVVPLRTFEKEKFFE-GCMPIEVMAQRGIKTMLFGPMKPVGLEDP--KT 61

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G+R    I L  +     +    G  T L    Q +  R IPGLE    +R G      +
Sbjct: 62  GKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNSF 121

Query: 346 IN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
           +N P+ L PT ++KK   LF AGQ+ G  GY E+AA GL+AGIN+AR +   + I F R 
Sbjct: 122 MNSPELLKPTYQSKKRDDLFFAGQMTGVEGYVESAASGLLAGINAARLAKGEEPIEFPRE 181

Query: 405 DSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKR 463
            + +G M   +T                     +P NA+  L P +  ++    ER +  
Sbjct: 182 TT-LGSMAYYITHAE--------------GKHFQPMNANFGLFPELPERIRDKKERYEAI 226

Query: 464 FAKYIQEYNFLRSLL 478
             + +     +   L
Sbjct: 227 ANRALDVQAQVIQSL 241


>gi|255029341|ref|ZP_05301292.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           LO28]
          Length = 259

 Score =  190 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 109/288 (37%), Gaps = 33/288 (11%)

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRI 252
             R   G  A L+       + E     E L+      +    ++ E  +         +
Sbjct: 3   KSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAALKEFEKEVFFEGCMPIEV 55

Query: 253 IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIST 312
           +       A        +GP     +ED   + G+R    + L  +     +    G  T
Sbjct: 56  M-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQLRQDDAAGTLYNMVGFQT 106

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQING 371
            L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF AGQ+ G
Sbjct: 107 HLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTG 166

Query: 372 TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRA 431
             GY E+AA GL AGIN+A    + + + F  T++ IG +   +T              +
Sbjct: 167 VEGYVESAASGLAAGINAANFIQEKELVVFP-TETAIGSLAHYIT--------------S 211

Query: 432 EYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
             + S +P N +  L P +  K+    ER +K   + +     +   L
Sbjct: 212 ASKKSFQPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKKVAEEL 259


>gi|76782136|gb|ABA54842.1| GidA [Nostoc commune DRH1]
          Length = 154

 Score =  190 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              ++DVIV+G GH+GCEAA  +A+LG  T L+T     I    CNPA+GG  K  L  E
Sbjct: 9   FQDAFDVIVVGAGHSGCEAALASARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G +G+VAD   +Q R+LN  +GPAV   R Q D+  Y   M+  + +QENL + +
Sbjct: 69  VDALGGEIGKVADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQENLTIRE 128

Query: 122 GEVAGFNTEKN-IISSIVMQDNSMI 145
                        +S +        
Sbjct: 129 SIATDLVLGAYGEVSGVETYFGVGF 153


>gi|148988382|ref|ZP_01819829.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926063|gb|EDK77137.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
          Length = 306

 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 101/315 (32%), Gaps = 50/315 (15%)

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  + D  +  +   ++K      R   G  A L+          KQ          F 
Sbjct: 24  AAAPIIDVNTIDMSKVYLK-----SRYDKGEAAYLNAP------MTKQEF------MDFH 66

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER- 288
              +   +    +     E +      I+  A        YGP     +E      G R 
Sbjct: 67  EALVNAEEAP--LNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRD 124

Query: 289 -----NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
                    + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 125 GEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 184

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GLVAGIN+AR   +   + F 
Sbjct: 185 SYMDSPNLLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKEESEVIFP 244

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
            T + IG +   +T                               P+ +  G I E   +
Sbjct: 245 ETTA-IGSLAHYITHADSK-----------------------HFQPMNVNFGIIKELEGE 280

Query: 463 RFAKYIQEYNFLRSL 477
           R       Y  +   
Sbjct: 281 RIRDKKARYEKIAER 295


>gi|56807499|ref|ZP_00365436.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pyogenes M49 591]
          Length = 317

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 103/315 (32%), Gaps = 50/315 (15%)

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
            A  + D  +  +   ++K      R   G  A L+               E  + F   
Sbjct: 34  AAAPIIDKSTIDMSKVYLK-----SRYDKGEAAYLNCPMTK----------EEFMAFH-- 76

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER- 288
                    E  +     E +      I+  A        YGP     +E      G R 
Sbjct: 77  --DALTNAEEAPLNAFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPDDYTGPRD 134

Query: 289 -----NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
                    + L  +     +    G  T L    Q +  + IPGLE    +R G     
Sbjct: 135 GEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRN 194

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            Y++ P  L  T +++    LF AGQ+ G  GY E+AA GLVAGIN+AR   + + + F 
Sbjct: 195 SYMDSPNLLTETFQSRSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKREEALIFP 254

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQK 462
           +T + IG +   +T                               P+ +  G I E    
Sbjct: 255 QTTA-IGSLPHYVTHADSK-----------------------HFQPMNVNFGIIKELEGP 290

Query: 463 RFAKYIQEYNFLRSL 477
           R     + Y  + S 
Sbjct: 291 RIRDKKERYEAIASR 305


>gi|206895790|ref|YP_002247058.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Coprothermobacter proteolyticus DSM 5265]
 gi|254789170|sp|B5Y8G1|TRMFO_COPPD RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|206738407|gb|ACI17485.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 432

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 166/485 (34%), Gaps = 71/485 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----L 53
           DV VIGGG AG EAA   A LG    L           HKTS +  + C+ ++G      
Sbjct: 2   DVWVIGGGLAGSEAALTLADLGFPVTLFEMRPAVMTPAHKTSKLAELVCSNSLGSLSTDN 61

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            KG L+ E+  L   +  +A  A I                    DREL+   ++  + S
Sbjct: 62  AKGELLFELKVLGSSLVNLAFEAQIGGD------------KALVVDRELFSTLVEDAVRS 109

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             N+ V++ E+     +   I             +   L  G  L  +            
Sbjct: 110 HRNITVVRAEITEIPKDVPCII------------APGPLIKGDLLHFLEEREGRCEAQYY 157

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              SPS       M + F   R   G+    D   +   K E  +  E+L+      +  
Sbjct: 158 DATSPSILSETIDMDYAFWGNRFGEGS----DYLNVPLSKEEYYWFVEQLLNA---REAH 210

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
            +   +             I       A    +  ++GP     +     +F +     I
Sbjct: 211 RHDFDKPDAFFERCLPVEEI-------ARRGKESLAFGPMRPTGLAIP-EKFRD-VHAVI 261

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            L  E  +  ++   G  T +    Q    + +P  +    +R G   +  ++ P  +  
Sbjct: 262 QLRKENASGTILNMVGFQTGISHTEQISIFKQLPAFKNAVFVRLGQIHQNRFL-PGVVNK 320

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
             +++     F AGQ  GT GY EA A GL AGIN AR       I     +S +G ++ 
Sbjct: 321 FFQSRTNRLWFYAGQFTGTEGYLEAIAGGLWAGINVARLLGGEKLIPLPE-ESMLGGLVT 379

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473
            +  + + E               +P   +  L P  ++ G   ER+QKR  +      +
Sbjct: 380 YI-EQSLPE-------------VKQPMGVNWGLVP-PVE-GKKSERKQKRVDRARIAIEY 423

Query: 474 LRSLL 478
               L
Sbjct: 424 AAREL 428


>gi|119569153|gb|EAW48768.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_i [Homo sapiens]
          Length = 228

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 9/207 (4%)

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           MFTSR E+R+SLRPDNAD+RLT  G K  GC+ ++R +R            S+LKS+   
Sbjct: 1   MFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFL 60

Query: 485 SKNLSSTSISFKQDGKTRT---AYEFLSYPDFSIQNLFSICPD-ARKFS--SLVIERLQI 538
           S                     A + L Y +  + +L    P+  +K++    + ERL+I
Sbjct: 61  SSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKI 120

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLP--ALSNELKEKLSILKPFNLLQAS 596
           E++Y +    Q+ E K ++ +E   +PKD DY ++   +LS+E++EKL   +P  +  AS
Sbjct: 121 EATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAAS 180

Query: 597 KIEGMTPAALNLLLIYIKKNTVKLNEI 623
           +I G+TPAA+  LL ++K    + + +
Sbjct: 181 RIPGVTPAAIINLLRFVKTTQRRQSAM 207


>gi|313633456|gb|EFS00281.1| tRNA:M(5)U-54 methyltransferase [Listeria seeligeri FSL N1-067]
          Length = 219

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 19/227 (8%)

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           E        I+  A        +GP     +ED   + G+R    + L  +     +   
Sbjct: 4   EVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQLRQDDAAGTLYNM 61

Query: 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLA 366
            G  T L    Q +    IPGLE   I+R G      +IN P  L PT + K  + LF A
Sbjct: 62  VGFQTHLKWGEQKRVFSMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKSRNDLFFA 121

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           GQ+ G  GY E+AA GL AGIN+A      + I F + ++ IG + + +T          
Sbjct: 122 GQMTGVEGYVESAASGLAAGINAANFVEDKELIIFPK-ETAIGSLANYIT---------- 170

Query: 427 FTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYN 472
               +  + S +P N +  L P +  K+    ER +K   + +    
Sbjct: 171 ----SASKKSFQPMNVNFGLFPELASKIRAKQERNEKLAERALNAIK 213


>gi|58699038|ref|ZP_00373881.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534448|gb|EAL58604.1| glucose-inhibited division protein A [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 234

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 103/204 (50%), Gaps = 16/204 (7%)

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           VMIDDL +KGV+EPYR+FTSRAEYR+++R DNAD RLT  G  +  +   R       ++
Sbjct: 23  VMIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLE 82

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
               L   L SL +T + L S  I    DG  +TA + LSYP+     L  I P+    +
Sbjct: 83  SIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSVT 142

Query: 530 S----------------LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSL 573
                             + E ++IE+ Y  Y  RQ  + K ++ E    IP DF+YS +
Sbjct: 143 RWNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQV 202

Query: 574 PALSNELKEKLSILKPFNLLQASK 597
             LS+E+ EKL  +    L   SK
Sbjct: 203 KGLSSEVIEKLQTINQRRLALQSK 226


>gi|289668144|ref|ZP_06489219.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 159

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/152 (52%), Positives = 97/152 (63%), Gaps = 5/152 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGGHAG EAA  +A+ GA T L+TH   ++G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   YDVIVIGGGHAGTEAALASARAGARTLLLTHNIESVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M R AD AGIQ+R LN  KGPAVR  R QADR LYR A++  + +Q NL V Q  V 
Sbjct: 68  GGAMARAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRCIVEAQPNLTVFQAAVD 127

Query: 126 GFNTEKNI-----ISSIVMQDNSMIRCSTVVL 152
                        +  ++ Q        +VVL
Sbjct: 128 DLIIHNGTSEADSVRGVITQTGLRFEAPSVVL 159


>gi|254994488|ref|ZP_05276678.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J2-064]
          Length = 252

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 102/259 (39%), Gaps = 26/259 (10%)

Query: 229 MTDKITNRQIECGITRTNLETHRIIME-------NIKHSAIYSGDIKSYGPRYCPSIEDK 281
           M+++  N   E  +T           E        I+  A        +GP     +ED 
Sbjct: 11  MSEEEFNAFYEALVTAETAALKEFEKEVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDP 70

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
             + G+R    + L  +     +    G  T L    Q +    IPGLE   I+R G   
Sbjct: 71  --KTGKRPYAVLQLRQDDAAGTLYNMVGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMH 128

Query: 342 EYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400
              +IN P  L PT + K  + LF AGQ+ G  GY E+AA GL AGIN+A    + + + 
Sbjct: 129 RNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVESAASGLAAGINAANFVEEKELVV 188

Query: 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGER 459
           F   ++ IG +   +T              +  + S +P N +  L P +  K+    ER
Sbjct: 189 FPA-ETAIGSLAHYIT--------------SASKKSFQPMNVNFGLFPELETKIRAKQER 233

Query: 460 RQKRFAKYIQEYNFLRSLL 478
            +K   + +     +   L
Sbjct: 234 NEKLAERALNAIKRVAEQL 252


>gi|269215606|ref|ZP_06159460.1| tRNA:M(5)U-54 methyltransferase [Slackia exigua ATCC 700122]
 gi|269131093|gb|EEZ62168.1| tRNA:M(5)U-54 methyltransferase [Slackia exigua ATCC 700122]
          Length = 446

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 142/445 (31%), Gaps = 34/445 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G AG EAA   A  G    L   + +    +        L   +  + +     
Sbjct: 4   VDIIGAGLAGTEAALQLADRGVRVRLFEMRPAVGTPVHTGAGCAELVCSNSFKSMKPESA 63

Query: 68  LMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                 + + +  R+           G     DRE +     + + +  N++ I GEV  
Sbjct: 64  AGMLKHELSLLGSRLYACALASKVDAGGALAVDREAFSRRATQHVDAHPNIERIVGEVRE 123

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
            + E+   + I+         ++  LT+    + +  I      A     +P  +  +  
Sbjct: 124 PDYERAPDAVII---------ASGPLTSDALAQWISGIAGADNLAFFDAAAPIVAADSLD 174

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
               F   R +   P   D     + +   +   + L+    +  K              
Sbjct: 175 ESILFRQSRYEKDAPG--DYLNAPFSRDSYEAFIDALVSAQRVIMK-------------E 219

Query: 247 LETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
            ET  +    + I+  A    D   +GP     + D     G+R    + L  E      
Sbjct: 220 FETKDLFQACQPIEEIARKGIDAPRFGPLKPVGLADPA--TGKRPWAAVQLRAENAEKSA 277

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLET-KKISG 362
               G  T L    Q +  R IPGLE     R G      +++ P  L   L   + +  
Sbjct: 278 YNLVGFQTNLTFSEQRRVFRMIPGLEHAEFSRFGVMHRNTFVSAPGLLDRNLRLMRSLPS 337

Query: 363 -LFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421
             F+AGQ+ GT GY EA   G+   ++                 S+ G ++   T    +
Sbjct: 338 PTFIAGQLAGTEGYCEAIMSGVHVALSVFALIEGRAMPSIPSASSF-GALLRYATDPATI 396

Query: 422 EPYRMFTSRAEYRISLRPDNADNRL 446
           + Y+           L     + RL
Sbjct: 397 D-YQPMHVNFGIMPPLPERVGNKRL 420


>gi|309805690|ref|ZP_07699730.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           09V1-c]
 gi|308164943|gb|EFO67186.1| tRNA:m(5)U-54 methyltransferase [Lactobacillus iners LactinV
           09V1-c]
          Length = 347

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 114/376 (30%), Gaps = 58/376 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---------CNPAIGGL----G 54
           V VIGGG AG EA    AK G    L   +   +             C  ++        
Sbjct: 5   VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRSNQLSNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD L+ RVAD   +              G     DR+ +   + + I   
Sbjct: 65  VGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQIINEL 112

Query: 115 ENLDVIQGEVAGFNTEKNII--SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            N+ V   E+     +   I  +  +  D    +      +        +H         
Sbjct: 113 PNVHVHNEEIKDIPKDGINIIATGPLTSDLLATKIKEFCGSE------SLHFFDAA---- 162

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               +P  +  +      +   R   G  A L          ++QF +       F  + 
Sbjct: 163 ----APIITAESIDYNIVYKKSRYDKGEAAYL-----NCPMDKEQFVN-------FYNNL 206

Query: 233 ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
           IT    E      N          I+  A        +GP     +ED   + G+     
Sbjct: 207 ITAETAELHEFEKN--NVFEGCMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAV 262

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI-NPKEL 351
           + L  +  +  +    G  T L    Q +    IPGL     +R G      YI +P+ L
Sbjct: 263 VQLRQDNASASMYNIVGFQTHLKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVL 322

Query: 352 FPTLETKKISGLFLAG 367
             T ETK        G
Sbjct: 323 NSTYETKLCKNFIFCG 338


>gi|213022560|ref|ZP_03337007.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 136

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/136 (53%), Positives = 93/136 (68%), Gaps = 1/136 (0%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV
Sbjct: 1   MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +E+DAL GLM +  D AGIQF++LN  KGPAVR  R QADR LYR A++  + +Q NL +
Sbjct: 61  KEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRVLYRQAVRIALENQPNLMI 120

Query: 120 IQGEVAGFNTEKNIIS 135
            Q  V     E + + 
Sbjct: 121 FQQAVEDLIVENDRVV 136


>gi|68061731|ref|XP_672866.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56490284|emb|CAI01577.1| hypothetical protein PB300279.00.0 [Plasmodium berghei]
          Length = 378

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 118/204 (57%), Gaps = 16/204 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YDVIVIGGGH GCEA+ ++AKLGA T LIT    +IG MSCNP+IGG+GKG LV+EI
Sbjct: 43  EKKYDVIVIGGGHGGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEI 102

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           DAL GLMG+V D +GI F++LN+KKG AVRG R QADR+LY   M+  + +  NL +++ 
Sbjct: 103 DALGGLMGKVIDKSGIHFKILNLKKGLAVRGHRAQADRDLYNYYMKEYMFNMPNLYILEN 162

Query: 123 EVAGFNTEKNI----------------ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                  E ++                +  I  + +       V+LTTGTFL G+ HIGK
Sbjct: 163 TAHSLLIENSMTRNDSTNMEEKKKCKYVYGIKNKCSCEFYADNVILTTGTFLGGICHIGK 222

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFD 190
            K   GR+         N      
Sbjct: 223 DKYKGGRIKRILGKGKDNQLTDAG 246



 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP--FSFMTD 231
           + +  + ++     + +F+  R+KTGT  RL   +I +D  EK    E+  P  FSF+ D
Sbjct: 291 LIEESTKNIATQLKENNFEIKRMKTGTRPRLCKNSINFDILEK-EGTEKKHPFYFSFLND 349

Query: 232 KITN-RQIECGITRTNLETHRIIMENIKH 259
           KI N + +    T T L+TH ++++    
Sbjct: 350 KIHNSKTLPSYKTYTKLKTHELVIKYFHE 378


>gi|251772343|gb|EES52911.1| glucose-inhibited division protein A [Leptospirillum
           ferrodiazotrophum]
          Length = 462

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 155/482 (32%), Gaps = 61/482 (12%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI---------GSMSCNPAIG----GLGKG 56
           V+GGG AG EAA   A  G    L   +  T+           + C+ ++     G   G
Sbjct: 8   VVGGGLAGTEAALSLAAAGVGVDLFEMRPGTMTGAHRTAALSELVCSNSLKSLDPGTAHG 67

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L  E+  +   +   A    I              G     DRE +   + R + S+  
Sbjct: 68  LLKEELLKMGSFVLEAALECRI------------PGGGALVVDRERFSERLTRAVESEPT 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           + + +  V    +++ ++             +T  LT  T  R +         +     
Sbjct: 116 ITIHRERVDRLPSDRPLVL------------ATGPLTHPTLTRALEEAIGSDRLSFYDAI 163

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           SP     +  + F       + G P R  G  +      +              D +   
Sbjct: 164 SPVVEAAS--LDFAPLFRGDRWGEPGR--GDYVNVPLDAE-------TYRQLCNDLVAGE 212

Query: 237 QIECGITRTN-LETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           ++       +  E  R     + ++  A    +  ++GP     + D   R G+     +
Sbjct: 213 RVPPHEGVEDRPEVLRAFEACQPVESLADTGPETLAFGPLRPVGLVDP--RTGKIPHAVV 270

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELF 352
            L  E          G  T L    Q +  R +PG      +R G      +++ P+ L 
Sbjct: 271 QLRAENREETAYNLVGFQTKLKYSEQDRIFRKLPGFSGAVFLRYGSLHRNTFLDAPRVLS 330

Query: 353 PTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             L  + + G++  GQ+ G  GY E+ A G +     A   +    I     +S +G ++
Sbjct: 331 WDLSLRALPGVYPTGQMMGVEGYTESVALGRLT----ALLLSPGGSIPLPPAESALGALV 386

Query: 413 DDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL-TPIGMKLGCIGERRQKRFAKYIQEY 471
             L      E         E      P N    L  P+G   G   ERR+    +  + +
Sbjct: 387 RALVPGAYRE--EGVPPGPEETGRFSPVNLHFGLFPPVGRVRGGKSERRKAVVVRARESF 444

Query: 472 NF 473
           + 
Sbjct: 445 DR 446


>gi|329727205|gb|EGG63661.1| putative tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 210

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 95/228 (41%), Gaps = 21/228 (9%)

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
             +  A        +GP     +ED   + G+R    + L  +     +    G  T L 
Sbjct: 2   PFEVMAERGRKTLLFGPMKPVGLEDP--KTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLK 59

Query: 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG 374
              Q + I+ IPGLE V+I+R G      +IN P  L    E      +  AGQ+ G  G
Sbjct: 60  WGAQKEVIKLIPGLENVDIVRYGVMHRNTFINSPDVLNEKYELISQPNIQFAGQMTGVEG 119

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           Y E+AA GLVAGIN A K      + F R ++ IG M   +             S A+  
Sbjct: 120 YVESAASGLVAGINLAHKILGKGEVVFPR-ETMIGSMAYYI-------------SHAKNN 165

Query: 435 ISLRPDNADNRLTPIGMKLGCIG-ERRQKRFAKYIQEYNFLRSLLKSL 481
            + +P NA+  L P  ++      + R +  A   +  ++L +  K+L
Sbjct: 166 KNFQPMNANFGLLP-SLETRIKDKKERYEAQAN--RALDYLENFKKTL 210


>gi|58257980|gb|AAW69385.1| glucose-inhibited division protein [Thermocrinis ruber DSM 12173]
          Length = 131

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%), Gaps = 7/130 (5%)

Query: 222 RLIPFSFMTDKIT-------NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
               FSF T+ +          Q+ C IT T  +TH II +N+  +A+Y G IK  GPRY
Sbjct: 1   PPPKFSFWTEPVGSYWFPPGKEQVLCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRY 60

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
           CPSIEDK+V+F +++ HQ+FLEPEGL+T  VYPNG+ST+LPEE+Q +  R IPGLEKV +
Sbjct: 61  CPSIEDKVVKFADKDRHQVFLEPEGLDTIEVYPNGLSTSLPEEVQWELYRPIPGLEKVEL 120

Query: 335 IRPGYAIEYD 344
           IRP +AIEY+
Sbjct: 121 IRPAHAIEYE 130


>gi|218662138|ref|ZP_03518068.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli IE4771]
          Length = 302

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 99/310 (31%), Gaps = 40/310 (12%)

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
               +     R            ++    D  +      A + G T+ + + E     + 
Sbjct: 2   IDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDG 61

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +P   M ++                                 +   +GP     + +  
Sbjct: 62  CLPIEVMAER-------------------------------GRETLRHGPMKPMGLTNAH 90

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
                +    + L  +     +    G  T L    Q +  R IPGLE     R G    
Sbjct: 91  NPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHR 149

Query: 343 YDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICF 401
             YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I  
Sbjct: 150 NTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKG-EAILL 208

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQ 461
               + +G ++  +T   ++      +     + S +P N +  L P       +     
Sbjct: 209 PPATTALGSLLGHITGGHIV------SDEEPGKRSFQPMNINFGLFPELQPGSIVKPEGV 262

Query: 462 KRFAKYIQEY 471
           KRF    +  
Sbjct: 263 KRFRGKDKTI 272


>gi|325917200|ref|ZP_08179427.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325536590|gb|EGD08359.1| NAD/FAD-utilizing enzyme apparently involved in cell division
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 228

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 95/146 (65%), Gaps = 5/146 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIVIGGGHAG EAA  +A+ GA T L+TH   T+G+MSCNPAIGG+GKGHLV+EIDAL
Sbjct: 8   FDVIVIGGGHAGTEAALASARAGARTLLLTHNIETVGAMSCNPAIGGIGKGHLVKEIDAL 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD AGIQ+R LN  KGPAVR  R QADR LYR A++R + +Q NL V Q  V 
Sbjct: 68  GGAMAHAADLAGIQWRTLNASKGPAVRATRCQADRNLYRNAIRRIVEAQPNLTVFQAAVD 127

Query: 126 GFNT-----EKNIISSIVMQDNSMIR 146
                    E + +  ++ Q      
Sbjct: 128 DLIIHNGASEADSVRGVITQTGLRFE 153


>gi|258642583|gb|ACV85904.1| mitochondrial translation optimization protein [Emericella
           nidulans]
          Length = 172

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 11/172 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRE
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRE 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTV 150
           LY++ M+ E+L+ ENL +++G+VA     K             I  + ++   +I  S V
Sbjct: 61  LYKIYMREELLATENLSIVEGKVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           V+TTGTFL G IHIG    P+GR+G++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 VITTGTFLGGEIHIGLKAYPSGRIGEAATFGLSKSLREAGFQLGRLKTGTPP 172


>gi|258642581|gb|ACV85903.1| mitochondrial translation optimization protein [Emericella
           nidulans]
          Length = 172

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 108/172 (62%), Gaps = 11/172 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AG+ F VLN  KGPAV GPR Q DRE
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRE 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTV 150
           LY+  M+ E+L+ ENL +++G+VA     K             I  + ++   +I  S V
Sbjct: 61  LYKNYMREELLATENLSIVEGKVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           V+TTGTFL G IHIG    P+GR+G++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 VITTGTFLGGEIHIGLKAYPSGRIGEAATFGLSKSLREAGFQLGRLKTGTPP 172


>gi|313759758|gb|ADR79191.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759760|gb|ADR79192.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759764|gb|ADR79194.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759768|gb|ADR79196.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
          Length = 158

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGD-PGVGFVHRSEPFVPPLPQVSCYITHTTEKTKEIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|258642559|gb|ACV85892.1| mitochondrial translation optimization protein [Aspergillus
           cristatus]
 gi|258642603|gb|ACV85914.1| mitochondrial translation optimization protein [Aspergillus
           tamarii]
          Length = 171

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKRYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|258642561|gb|ACV85893.1| mitochondrial translation optimization protein [Aspergillus flavus]
 gi|258642565|gb|ACV85895.1| mitochondrial translation optimization protein [Aspergillus flavus]
 gi|258642593|gb|ACV85909.1| mitochondrial translation optimization protein [Aspergillus oryzae]
 gi|258642595|gb|ACV85910.1| mitochondrial translation optimization protein [Aspergillus
           parasiticus]
 gi|258642597|gb|ACV85911.1| mitochondrial translation optimization protein [Aspergillus
           parasiticus]
 gi|258642601|gb|ACV85913.1| mitochondrial translation optimization protein [Aspergillus
           subolivaceus]
 gi|258642619|gb|ACV85922.1| mitochondrial translation optimization protein [Aspergillus wentii]
          Length = 171

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKKYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|258642549|gb|ACV85887.1| mitochondrial translation optimization protein [Aspergillus
           brunneo-uniseriatus]
 gi|258642569|gb|ACV85897.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
 gi|258642571|gb|ACV85898.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
 gi|258642573|gb|ACV85899.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
          Length = 171

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLATEGLSIVEGKVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|313759756|gb|ADR79190.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila abortus]
 gi|313759762|gb|ADR79193.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
 gi|313759770|gb|ADR79197.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila abortus LLG]
          Length = 158

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGD-PGVGFVHRSEPFVPPLPQVSCYITHTTEKTKDIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|218463270|ref|ZP_03503361.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli Kim 5]
          Length = 174

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 1/167 (0%)

Query: 452 KLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP 511
           +LGC+   R++RF  Y  E +  R+ L SL +T        ++   DG+ RTAY+ LSYP
Sbjct: 1   RLGCVSRARERRFTVYQAEVDAGRAQLMSLKVTPNKARRAGLNINLDGQRRTAYDLLSYP 60

Query: 512 DFSIQNLFSICPD-ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           D+    L  + PD        V E L+IE+ Y+ Y  RQ     + + +E+R IP DFDY
Sbjct: 61  DYDFAALRRVWPDALGAIRPTVAEALEIEAGYSVYLDRQAAAIADQQRDEERRIPDDFDY 120

Query: 571 SSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNT 617
           S+L  LSNELK KLS  +PFN+ QA+ +EGMTPAA+ LLL+++++ +
Sbjct: 121 SALSGLSNELKTKLSAARPFNVAQAAIVEGMTPAAIALLLVHLRRRS 167


>gi|81428598|ref|YP_395598.1| hypothetical protein LSA0987 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610240|emb|CAI55289.1| Hypotehtical protein, GidA family (C-terminal fragment)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 186

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 17/200 (8%)

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           KI R GE+    + L  +     +    G  T L    Q +  R IPGLE    +R G  
Sbjct: 2   KIPRLGEQPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVM 61

Query: 341 IEYDYI-NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               ++ +P  L PT ++K+ S LF AGQ+ G  GY E+AA GLVAGIN++R +   + +
Sbjct: 62  HRNTFMKSPDVLLPTYQSKQRSDLFFAGQMTGVEGYVESAASGLVAGINASRLALDTEPV 121

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR-LTPIGMKLGCIGE 458
            F  T +  G M   +T                     +P NA+     P+  ++    E
Sbjct: 122 TFPATTAM-GSMAHYITHTSAKH--------------FQPMNANFGIFEPLKQRIRDKKE 166

Query: 459 RRQKRFAKYIQEYNFLRSLL 478
           R Q    + +   +  +  L
Sbjct: 167 RNQALADRALASIDTFKETL 186


>gi|313759766|gb|ADR79195.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Chlamydophila psittaci]
          Length = 158

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
           V+L++GTF+RG+IHIG L  P GR+GD  +  L  +  +  F   RLKTGTP RL   +I
Sbjct: 1   VILSSGTFMRGLIHIGDLNFPGGRLGDPAATGLSLALKERGFPISRLKTGTPPRLLASSI 60

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +  TE+Q  D   + F   ++       Q+ C IT T  +T  II  NI  SA+Y G I
Sbjct: 61  DFSVTEEQPGD-PGVGFVHKSEPFVPPLPQVSCYITHTTEKTKEIIAANIHRSALYGGRI 119

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           +  GPRYCPSIEDKIV+F ++  H IF+EPEG++T  VY
Sbjct: 120 EGIGPRYCPSIEDKIVKFADKERHHIFIEPEGIHTQEVY 158


>gi|258642575|gb|ACV85900.1| mitochondrial translation optimization protein [Aspergillus
           fumigatus]
          Length = 171

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDRAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLATEGLSIVEGKVADIVVSKEGVENIPGSQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|312082549|ref|XP_003143490.1| glucose inhibited division protein A [Loa loa]
 gi|307761348|gb|EFO20582.1| glucose inhibited division protein A [Loa loa]
          Length = 160

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 93/140 (66%), Gaps = 6/140 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGGHAGCEAA  A +  A T L+T++  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 17  TYDVIVIGGGHAGCEAATAATRCSAHTLLLTNRKDTIGEMSCNPSFGGVGKGHLIREVDA 76

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVIQGE 123
           LDGL GR+ D A I +  LN  +GPAV G R Q DR+LY+  MQ EIL+  E LDV++  
Sbjct: 77  LDGLCGRICDKAAINYHALNSSQGPAVLGLRAQIDRKLYKQHMQHEILNCTEGLDVMERT 136

Query: 124 VAGFNT-----EKNIISSIV 138
           V          E   +  +V
Sbjct: 137 VDDLIIKYKEGETPRVVGVV 156


>gi|258642555|gb|ACV85890.1| mitochondrial translation optimization protein [Aspergillus
           carbonarius]
          Length = 171

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L  E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLGTEGLSILEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IH G    P+GR+G++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHTGLNAYPSGRLGEAATFGLSKSLRDAGFQLGRLKTGTPP 171


>gi|258642553|gb|ACV85889.1| mitochondrial translation optimization protein [Aspergillus
           carbonarius]
          Length = 171

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L  E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKRYMQEELLGTEGLSILEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GR+G++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLNAYPSGRLGEAATFGLSKSLRDAGFQLGRLKTGTPP 171


>gi|258642551|gb|ACV85888.1| mitochondrial translation optimization protein [Aspergillus
           candidus]
 gi|258642587|gb|ACV85906.1| mitochondrial translation optimization protein [Aspergillus niger]
 gi|258642599|gb|ACV85912.1| mitochondrial translation optimization protein [Aspergillus
           phoenicis]
 gi|258642613|gb|ACV85919.1| mitochondrial translation optimization protein [Aspergillus usamii]
          Length = 171

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|258642611|gb|ACV85918.1| mitochondrial translation optimization protein [Aspergillus
           tubingensis]
          Length = 171

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELRGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|5731953|emb|CAB52589.1| glucose inhibited division protein A, putative [Sweet potato little
           leaf phytoplasma]
          Length = 183

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 4/187 (2%)

Query: 408 IGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
           IGV+IDDL +KG  EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +        
Sbjct: 1   IGVLIDDLINKGTYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNK 60

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK 527
             + N+L+  L +  L + +L   +I    D +  + Y+ L   D     L +    A +
Sbjct: 61  QMQINYLKEKLHNFYLDADSLYKFNI--NSDSRRISLYQLLKRSDLKEDILNNFF--ASQ 116

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +S  V+E++ I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL+ +
Sbjct: 117 YSVDVLEQVGIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKLTKI 176

Query: 588 KPFNLLQ 594
           KPFN+ Q
Sbjct: 177 KPFNIAQ 183


>gi|294614818|ref|ZP_06694713.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Enterococcus faecium E1636]
 gi|291592280|gb|EFF23894.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Enterococcus faecium E1636]
          Length = 196

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           + G+R    I L  +     +    G  T L    Q +  R IPGLE    +R G     
Sbjct: 7   KTGKRPYAVIQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRN 66

Query: 344 DYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
            ++N P+ L PT ++ K   LF AGQ+ G  GY E+AA GL+AGIN+AR + +++ + F 
Sbjct: 67  SFMNSPELLKPTYQSTKREDLFFAGQMTGVEGYVESAASGLLAGINAARLAKEMEPVEFP 126

Query: 403 RTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQ 461
           + ++ IG M   +T                     +P NA+  L P +  ++     R +
Sbjct: 127 Q-ETAIGSMAYYITHAE--------------GKHFQPMNANYGLFPELPERIRDKKARYE 171

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSK 486
               + ++    +++ L+   + ++
Sbjct: 172 AIAQRALKANEAIKTELEKTAIPNE 196


>gi|258642563|gb|ACV85894.1| mitochondrial translation optimization protein [Aspergillus flavus]
          Length = 171

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+ N  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRIPNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+L+ E L V++G+VA     K            I  + ++   +I  S VV
Sbjct: 61  LYKKYMQEELLATEGLSVLEGKVADIVVSKEGVEDVPGAQGKIVGVRLESGEVIPTSRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGMTVYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|258642589|gb|ACV85907.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGAMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|70922386|ref|XP_734367.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507043|emb|CAH86072.1| hypothetical protein PC301834.00.0 [Plasmodium chabaudi chabaudi]
          Length = 212

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---- 229
           + +  + +L     + +F+  R+KTGTP RL   +I +D  EK    E+  PF F     
Sbjct: 27  LIEESTKNLATQLKENNFEIKRMKTGTPPRLCKDSINFDILEK-EGTEKKHPFYFSFLNS 85

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSG-DIKSYGPRYCPSIEDKIVRFGER 288
                N+ + C  T TN+ TH ++++ +     +   D    GPRYCPSI  K+ +F E+
Sbjct: 86  NKINNNKTLPCYKTYTNMNTHELVIKYLNELPDFDCYDKLGNGPRYCPSIAKKVTKFSEK 145

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINP 348
             H I+LEPEG +  ++YPNG+S+A P   Q + I +I GLE   I+ P Y +EY Y+NP
Sbjct: 146 KKHIIWLEPEGFDNILIYPNGLSSAYPLNRQQEIINSIKGLENAKILFPAYDVEYFYVNP 205

Query: 349 KELFPTLE 356
             L  TLE
Sbjct: 206 -CLNYTLE 212


>gi|258642585|gb|ACV85905.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNQSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     KN           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSILEGKVADIVVSKNEVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|258642617|gb|ACV85921.1| mitochondrial translation optimization protein [Aspergillus
           versicolor]
          Length = 171

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNQSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSILEGKVADIVVSKDEVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|258642605|gb|ACV85915.1| mitochondrial translation optimization protein [Aspergillus
           terreus]
          Length = 171

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 105/171 (61%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTEGLSIVEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|258642557|gb|ACV85891.1| mitochondrial translation optimization protein [Aspergillus
           clavatus]
          Length = 171

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++REIDA+DG+ GR+ D AGI FRVLN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREIDAMDGVAGRIIDRAGIMFRVLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+++ E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKTYMQEELVATEGLSIVEGKVADIVVSKEGVENVPGAQGKIVGVRLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLHEAGFQLGRLKTGTPP 171


>gi|258642547|gb|ACV85886.1| mitochondrial translation optimization protein [Aspergillus
           awamori]
          Length = 171

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ ++   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEDLQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|258642579|gb|ACV85902.1| mitochondrial translation optimization protein [Aspergillus
           japonicus]
          Length = 171

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K+           I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKDGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L        F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKPLRDAGFTLGRLKTGTPP 171


>gi|258642591|gb|ACV85908.1| mitochondrial translation optimization protein [Aspergillus niger]
          Length = 171

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 102/171 (59%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+   Q E+   E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYTQEELQGTEGLSIVEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|33863320|ref|NP_894880.1| tRNA (uracil-5-)-methyltransferase Gid [Prochlorococcus marinus
           str. MIT 9313]
 gi|81573157|sp|Q7TUW5|TRMFO_PROMM RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|33640769|emb|CAE21224.1| NAD binding site:Glucose inhibited division protein A family
           [Prochlorococcus marinus str. MIT 9313]
          Length = 364

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 112/363 (30%), Gaps = 56/363 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST---------IGSMSCNPAIGG----LG 54
           V+VIG G AG EAA   A+ G    LI  +               + C+ + G       
Sbjct: 7   VLVIGAGLAGSEAAWQIAQAGVPVRLIEMRPIKHSPAHYSSECAELVCSNSFGALSSDRA 66

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  ++ R AD+  +              G     +R  +  ++ +E+ + 
Sbjct: 67  AGLLKEELRRLGSIVIRTADSHAV------------PAGGALAVNRASFSASLTKELSAH 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            ++ + + E      E  I         S +    +   TG   R   H       A  +
Sbjct: 115 PHITIERQEQEHLPDEGQITVLATGPLTSELLAENLRTFTG---RSECHFFD---AASPI 168

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
            +  S  L        F   R   G     D   +     + Q+        +F    + 
Sbjct: 169 IEGESIDLT-----LAFRASRYDKG-----DADYMNCPMDKGQY-------LAFREALLN 211

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK--------IVRFG 286
             Q E                 I+  A    D   YGP     + D          VR  
Sbjct: 212 AEQAELKEFDKESAKFFEGCLPIEELARRGEDTMRYGPLKPIGLWDPRWGDLNDRDVRRS 271

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           +R    + L  E L   +    G  T L    Q + ++ IPGL +   +R G      + 
Sbjct: 272 KRAYAVVQLRKEDLEGRLWNLVGFQTNLKWSEQKRVLKMIPGLHQAEFVRFGVMHRNTFS 331

Query: 347 NPK 349
            P+
Sbjct: 332 KPR 334


>gi|258642567|gb|ACV85896.1| mitochondrial translation optimization protein [Aspergillus
           foetidus]
          Length = 171

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 101/171 (59%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRTLNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   E L +++G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELQGTEGLSIVEGKVADIVVSKEGVEHTPGAQGKIVGVRLESGEVIPTGKVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           + TGTFL G IHIG    P GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 IATGTFLGGEIHIGLEAYPLGRMGEAATFGLSKSLRDAGFTLGRLKTGTPP 171


>gi|3130071|dbj|BAA26100.1| unnamed protein product [Streptococcus mutans]
 gi|3130078|dbj|BAA26104.1| unnamed protein product [Streptococcus mutans]
 gi|3130092|dbj|BAA26112.1| unnamed protein product [Streptococcus mutans]
 gi|3130102|dbj|BAA26118.1| unnamed protein product [Streptococcus mutans]
          Length = 217

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER------NGHQIFLEPEGLNTDVVYPNG 309
            I+  A        YGP     +E      G R          + L  +     +    G
Sbjct: 2   PIEVMAKRGIKTLLYGPMKPVGLEYPQDYKGPRDGDYKAPYAVVQLRQDNAAGSLYNIVG 61

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQ 368
             T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AGQ
Sbjct: 62  FQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAGQ 121

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           + G  GY E+AA GLVAGIN+ R+    + + F +T + IG +   +T            
Sbjct: 122 MTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGALPYYITHTKSK------- 173

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                              P+ +  G I +    R     + Y  +   
Sbjct: 174 ----------------HFQPMNINFGIIKDLGGPRIRDKKKRYEKIAER 206


>gi|309805935|ref|ZP_07699965.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners LactinV
           03V1-b]
 gi|308167674|gb|EFO69823.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus iners LactinV
           03V1-b]
          Length = 223

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 19/226 (8%)

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
              I+  A        +GP     +ED   + G+     + L  +  +  +    G  T 
Sbjct: 12  CMPIEVMAKRGEKTMLFGPLKPVGLEDP--KTGKLPYAVVQLRQDNASASMYNIVGFQTH 69

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGT 372
           L    Q +    IPGL     +R G      YI+ P+ L  T ETK    LF AGQ+ G 
Sbjct: 70  LKFGEQKRVFSLIPGLANAVFVRYGKMHRNTYISSPEVLNSTYETKLCENLFFAGQMTGV 129

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAE 432
            GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS               
Sbjct: 130 EGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITSTSA------------ 176

Query: 433 YRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
              + +P NA   L P +  K+    ER   +    + E N  ++ 
Sbjct: 177 --KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELNEFKNK 220


>gi|3130085|dbj|BAA26108.1| unnamed protein product [Streptococcus mutans]
          Length = 217

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER------NGHQIFLEPEGLNTDVVYPNG 309
            I+  A        YGP     +E      G R          + L  +     +    G
Sbjct: 2   PIEVMAKRGIKTLLYGPMKPVGLEYPHDYKGPRDGDYKAPYAVVQLRQDNAAGSLYNIVG 61

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQ 368
             T L    Q +    IPGLE+ + +R G      YI+ P  L PT  T K   LF AGQ
Sbjct: 62  FQTHLKWSEQKRVFSMIPGLEQAHFVRYGVMHRNSYIDSPNLLAPTFATCKNPNLFFAGQ 121

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           + G  GY E+AA GLVAGIN+ R+    + + F +T + IG +   +T            
Sbjct: 122 MTGVEGYVESAASGLVAGINAVRRFKDEEAVIFPQTTA-IGALPYYITHTKSK------- 173

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                              P+ +  G I +    R     + Y  +   
Sbjct: 174 ----------------HFQPMNINFGIIKDLGGPRIRDKKKRYEKIAER 206


>gi|258642609|gb|ACV85917.1| mitochondrial translation optimization protein [Aspergillus
           terricola]
          Length = 171

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 104/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   + L + +G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTQGLSIAEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATLGLSKSLREAGFQLGRLKTGTPP 171


>gi|313678280|ref|YP_004056020.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma bovis PG45]
 gi|312950158|gb|ADR24753.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma bovis PG45]
          Length = 427

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 155/490 (31%), Gaps = 89/490 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-------------LGKG 56
           VIG G +G E      K      L   K+    ++  N                    KG
Sbjct: 6   VIGAGISGSEVCYQLLKRNYLVELFEVKSIKKNAIQTNDLFANLAYSDSFHSNEITSAKG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E+  LD  + +VAD A +    L               DR  ++  +   + S +N
Sbjct: 66  VLKQEMRLLDSFIIKVADYASVATEPL-------------LVDRNKFQEYITNYLKSHKN 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L +I+ E    +     I                                  I  G +  
Sbjct: 113 LKIIEKEYIEIDDSIPTI----------------------------------IATGPLSS 138

Query: 177 SPSNSLFNSFMKFDFDTG-RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
                L     K   ++           +   TI WD  +K   D++L  + F+      
Sbjct: 139 PA---LEKEIKKLVGESNFNYFDQVQPIIFKSTINWDYVQKSNNDDKL-FYCFLNKAEFE 194

Query: 236 RQIECGITRT---NLETHRI-IMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
                 I      +   + I ++ N   S+I +   K           D+++   +    
Sbjct: 195 HLYSLIINAEIFISPLPNEIALVHNHGFSSIETIAYKGKKELKNLLSTDELIESNDF-YA 253

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKE 350
            I L+ +  N +++      T +    Q++ I++IP L   +I+R G   + DYIN    
Sbjct: 254 VISLKQDEYNENLLRIVNFQTNIKIPWQNEIIKSIPALRNSSILRYGVMHKNDYINSANV 313

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
           L      K    +F  GQ+ GT GY EA+A  ++  IN  R    L         + IG 
Sbjct: 314 LDDNFSLKSKPNIFFVGQLTGTDGYLEASASAIICAINVDRYLMNL-PKAIPNNKTVIGS 372

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
           + + +                  +   +P  A+  L      +  +    + +     + 
Sbjct: 373 LCNYVLK--------------ANKADFQPMEANWGLVE---DIHLVPYNNEGKKKLSDRA 415

Query: 471 YNFLRSLLKS 480
              ++  +K 
Sbjct: 416 LFEIKEFIKQ 425


>gi|258642545|gb|ACV85885.1| mitochondrial translation optimization protein [Aspergillus
           aculeatus]
          Length = 172

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/172 (44%), Positives = 102/172 (59%), Gaps = 11/172 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR  D AG+ FR LN  KGP V GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRTIDRAGVMFRTLNRSKGPTVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTV 150
           LY+  M  E+ S E L +++G+V      K             I  + ++   +I  S V
Sbjct: 61  LYKKYMLEELSSTEGLSIVEGKVGDIVVSKEGVEDVPGMAQGKIVGVRLESGEVIATSRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           V+TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 VITTGTFLGGEIHIGLEAYPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 172


>gi|218682746|ref|ZP_03530347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Rhizobium etli CIAT 894]
          Length = 162

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 1/153 (0%)

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
           F  Y  E +  R+LL SL +T        ++   DG+ RTAY+ LSYP++    L  + P
Sbjct: 1   FTAYQAEIDAGRALLTSLAVTPNEARRAGLNINLDGQRRTAYDLLSYPNYDFAALREVWP 60

Query: 524 D-ARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
           +     +  V E L+IE+ Y+ Y  RQ     + + +E+R IP DF+Y +L  LSNELK 
Sbjct: 61  ETFAAIAPKVAEALEIEAGYSVYLERQASAIADQQRDEERQIPADFNYDALSGLSNELKT 120

Query: 583 KLSILKPFNLLQASKIEGMTPAALNLLLIYIKK 615
           KL+ ++PFN+ QA+ +EGMTPAA+ LLL+++++
Sbjct: 121 KLNAVRPFNIAQAAIVEGMTPAAIALLLVHLRR 153


>gi|258642607|gb|ACV85916.1| mitochondrial translation optimization protein [Aspergillus
           terreus]
          Length = 171

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 103/171 (60%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GK  ++RE+DA+DG+ GR+ D AGI FR+LN  KGPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKWTMIREVDAMDGVAGRIIDKAGIMFRILNRSKGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN----------IISSIVMQDNSMIRCSTVV 151
           LY+  MQ E+   + L + +G+VA     K            I  + ++   +I    VV
Sbjct: 61  LYKKYMQEELTGTQGLSIAEGKVADIVVSKEGIEDIPGAQGKIVGVRLESGEIIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG    P+GRMG++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLKVFPSGRMGEAATFGLSKSLREAGFQLGRLKTGTPP 171


>gi|148377414|ref|YP_001256290.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma agalactiae PG2]
 gi|205830311|sp|A5IXT6|TRMFO_MYCAP RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO; AltName: Full=Folate-dependent
           tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Folate-dependent tRNA(M-5-U54)-methyltransferase
 gi|148291460|emb|CAL58845.1| Glucose inhibited division protein [Mycoplasma agalactiae PG2]
          Length = 427

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/495 (17%), Positives = 156/495 (31%), Gaps = 95/495 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-------------LG 54
           V VIG G +G EA     K      L   K+     +  N                    
Sbjct: 4   VRVIGAGISGSEACYQLLKRNYLVELFEVKSIKKNPIQTNDMFANLAYSDSFHSNEITSA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           KG L +E+  LD L+   AD A +    L               DR  ++  +   + S 
Sbjct: 64  KGLLKQEMRLLDSLIINAADYAKVANEPL-------------LVDRYKFQEYITNYLRSH 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +NL +I+ E    +     I                                  I  G +
Sbjct: 111 QNLKIIEKEYITIDDSVPTI----------------------------------IATGPL 136

Query: 175 GDSPSNSLFNSFMKFDFDTG--RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               S +L N       ++         P  L   +I  +  +K   D++L  F    +K
Sbjct: 137 ---SSVNLENEIKNLVGESNFNLFDKVEPIVL-KSSINLNYVQKSALDDKL--FYCTLNK 190

Query: 233 ITNRQIECGITRTN------LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
                +   I              +++ +N   S I +    S        ++   +R  
Sbjct: 191 NEFEYLYNLIISAEIFVSPLPNEIKLLHDNGFRS-IETVAKSSKNELK-NLLQANEIRQT 248

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E     + L  +  N + +      T++    Q++ I+ +P L    I+R G   + DYI
Sbjct: 249 ENTYATVLLREDDYNENFLRIVNFQTSIKIPWQNEIIKAVPALANALILRYGVMHKNDYI 308

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N    L    + K    +F AGQ+ GT GY EA+A  ++  IN  R    L         
Sbjct: 309 NSANVLDDNFQLKSNPNIFFAGQLTGTDGYVEASASAIICAINVDRYLRNL-PKAIPNNK 367

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG + + +      +               +P  A+  L      +  +    + +  
Sbjct: 368 TVIGSLCNYVLIANKED--------------FQPMEANWGLVE---SMNLVSYNNEGKKK 410

Query: 466 KYIQEYNFLRSLLKS 480
              +  + ++  +K 
Sbjct: 411 LSDRAISEIKEFIKQ 425


>gi|291320082|ref|YP_003515340.1| glucose inhibited division protein [Mycoplasma agalactiae]
 gi|290752411|emb|CBH40382.1| Glucose inhibited division protein [Mycoplasma agalactiae]
          Length = 427

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 160/497 (32%), Gaps = 95/497 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-------------LG 54
           V VIG G +G EA     K      L   K+     +  N                    
Sbjct: 4   VRVIGAGISGSEACYQLLKRNYLVELFEVKSIKKNPIQTNDMFANLAYSDSFHSNEITSA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           K  L +E+  LD L+ + AD A +    L               DR  ++  +   + S 
Sbjct: 64  KCLLKQEMRLLDSLIIKAADYAKVANEPL-------------LVDRYKFQEYITNYLRSY 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           +NL +I+ E    +     I                                  I  G +
Sbjct: 111 QNLKIIEKEYITIDDSIPTI----------------------------------IATGPL 136

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
               S +L N       +             +   +I W+  +K   D++L   +   ++
Sbjct: 137 ---SSVNLENEIKNLVGE-SNFNLFDQVEPIVLKSSINWNYVQKSALDDKLFYCTLNKNE 192

Query: 233 ITN--RQIECGITRTNLETHRI--IMENIKHSAIYSGDIKSYGPRYCPSI--EDKIVRFG 286
             +    I       +   + I  + +N   S      +   G     ++   ++I++  
Sbjct: 193 FEHLYNLIVSAEIFISPLPNEIKLLHDNGFKSI---ESVAKSGKNKLKNLLQTNEIIQT- 248

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYI 346
           E     + L  +  N + +      T++    Q++ I+ +  L    I+R G   + DY+
Sbjct: 249 ENTYATVLLREDDYNENFLRIVNFQTSIKIPWQNEIIKAVSALANALILRYGVMHKNDYL 308

Query: 347 N-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           N    L+   + K    +F AGQ+ GT GY EA+A  ++  IN  R  N L         
Sbjct: 309 NSANVLYDNFQLKSNPNIFFAGQLTGTDGYVEASASAIICAINVDRYLNNL-PKIIPSNK 367

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFA 465
           + IG +   +                  +  ++P  A+  L      +  +    + +  
Sbjct: 368 TVIGSLCSYVLK--------------ANKNGIQPMEANWGLVE---GINLVSYNDESKMM 410

Query: 466 KYIQEYNFLRSLLKSLV 482
              +    ++ L+K + 
Sbjct: 411 LSERSLAEIKELMKQIS 427


>gi|258642577|gb|ACV85901.1| mitochondrial translation optimization protein [Aspergillus
           glaucus]
          Length = 171

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 10/171 (5%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI FR+LN ++GPAV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGIMIREVDAMDGVAGRIIDKAGIMFRMLNRRQGPAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTE----------KNIISSIVMQDNSMIRCSTVV 151
           LY+  MQ+E++  E L +++G+VA               +  I  + ++   +I    VV
Sbjct: 61  LYKNYMQQELIGTEGLSIVEGKVADIVVSTEGVEDIPGAQGKIVGVKLESGEVIPTGRVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +TTGTFL G IHIG     +GRMG++ +  L  S     F  GRLKTGTP 
Sbjct: 121 ITTGTFLGGEIHIGLDVFSSGRMGEAATFGLSKSLHDAGFQLGRLKTGTPP 171


>gi|20799554|gb|AAM28544.1|AF494515_1 glucose inhibited division protein A [Tomato big bud phytoplasma]
          Length = 174

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +KG  EPYR+ TSRAE+R+ LR DNAD RL P G K G I  +          + N+L+ 
Sbjct: 1   NKGTYEPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKNKQMQINYLKE 60

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L +  L + +L   +I    D +  + Y+ L   D     L +    A ++S  V+E++
Sbjct: 61  KLHNFYLDADSLYKFNI--NSDSRRISLYQLLKRSDLKEDILNNFF--ASQYSVDVLEQV 116

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQ 594
            I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEKL  +KPFN+ Q
Sbjct: 117 GIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKLXKIKPFNIAQ 174


>gi|258642615|gb|ACV85920.1| mitochondrial translation optimization protein [Aspergillus
           versicolor]
          Length = 172

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/172 (44%), Positives = 107/172 (62%), Gaps = 11/172 (6%)

Query: 42  GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G  SCNP+ GG+GKG ++RE+DA+DG+ GR+ D AGI F+VLN  KG AV GPR Q DR+
Sbjct: 1   GVCSCNPSFGGIGKGTMIREVDAMDGVAGRIVDKAGIMFKVLNRSKGQAVWGPRAQIDRD 60

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKN-----------IISSIVMQDNSMIRCSTV 150
           LY+  M+ E+LS E L +++G+VA     K+            I  + ++   +I  + V
Sbjct: 61  LYKNYMREELLSTEGLSILEGKVADIVVSKDDIAAGPAAPAGKIVEVRLESGEVIPTNRV 120

Query: 151 VLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           V+TTGTFL G I IG    P+GR+G++ +  L  S  +  F  GRLKTGTP 
Sbjct: 121 VITTGTFLGGEIQIGLKVFPSGRIGEAATFGLSKSLREAGFQLGRLKTGTPP 172


>gi|218510625|ref|ZP_03508503.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli Brasil 5]
          Length = 263

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 40/272 (14%)

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
            A + G T+ + + E     +  +P   M ++                            
Sbjct: 1   DALIAGDTVGFKEWEGTPYFDGCLPIEVMAER---------------------------- 32

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
                +   +GP     + +       +    + L  +     +    G  T L    Q 
Sbjct: 33  ---GRETLRHGPMKPMGLTNAHNPTV-KAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQA 88

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
              R IPGLE     R G      YIN P  L P+L  K   GL  AGQI G  GY E+A
Sbjct: 89  DIFRMIPGLESAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESA 148

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           + GL+AG  +A +    + I      + +G ++  +T   ++      T     + S +P
Sbjct: 149 SVGLMAGRFAAAERKG-EAILLPPATTALGSLLGHITGGHIV------TDEEPGKRSFQP 201

Query: 440 DNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
            N +  L P       +     KRF    +  
Sbjct: 202 MNINFGLFPELEPGSIVKPEGVKRFRGKDKTI 233


>gi|255023682|ref|ZP_05295668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Listeria monocytogenes FSL J1-208]
          Length = 117

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 70/110 (63%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G GHAG EA   + ++GA T ++T     +  M CNP++GG  KG +VREIDA
Sbjct: 8   TFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDA 67

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           L G MGR  D   IQ R+LN  KGPAVR  R QAD+  Y+  M+  I  +
Sbjct: 68  LGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKE 117


>gi|94264650|ref|ZP_01288432.1| Glucose-inhibited division protein A [delta proteobacterium MLMS-1]
 gi|93454881|gb|EAT05125.1| Glucose-inhibited division protein A [delta proteobacterium MLMS-1]
          Length = 226

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 22/236 (9%)

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
              +      I+  A    D   +GP     + D   R G      + L  E     +  
Sbjct: 8   EPKYFEGCLPIEVMAARGDDTLRFGPMKPVGLVDP--RTGTTPYAVVQLRRENREGVLYN 65

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T +    Q + +R IPGLEK    R G      ++N P+ L P+L+      + L
Sbjct: 66  LVGFQTKMTHPAQQRVLRLIPGLEKAEFARLGSIHRNTFVNAPRVLRPSLQLIARDDILL 125

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ++G  GY E+AA GL+AG+N+AR +           +   G +I  LT         
Sbjct: 126 AGQLSGVEGYVESAAGGLLAGLNAARLAGGEQPTIPPA-ECAHGALIRHLT--------- 175

Query: 426 MFTSRAEYRISLRPDNADNRLTP----IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
             TS  E   + +P N +  L P      +     GE R +   + +  +   R+ 
Sbjct: 176 --TSAPE---TFQPSNINFGLFPPLEGKKIPKRLRGEHRAQIARQALAHWQQERNR 226


>gi|145631885|ref|ZP_01787642.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
 gi|144982488|gb|EDJ90051.1| glucose-inhibited division protein A [Haemophilus influenzae R3021]
          Length = 132

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 500 KTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKF 558
           +  +  + L  P+ +   L S+ P          +E+++I   Y  Y   Q  E ++ K 
Sbjct: 8   REASGEDLLRRPEMTYDILTSLTPYKPAMEDREAVEQVEIAIKYQGYIEHQQEEIEKQKR 67

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
            E   IP +FDYS +  LSNE++ KL   +P ++ QAS+I G+TPAA++++L+ +KK  +
Sbjct: 68  HENTAIPANFDYSKVSGLSNEVRAKLEQHRPVSIGQASRISGITPAAISIILVNLKKQGM 127


>gi|330719609|gb|EGG98182.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [gamma proteobacterium IMCC2047]
          Length = 144

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 484 TSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYA 543
           T +          +     +    L  P+   Q++ ++  +  +    V E++  ++ Y 
Sbjct: 5   TPEAEQIADKLGSKLAHEYSLMALLKRPELDYQDVKNLKGEGSE-DEEVAEQVVTQAKYE 63

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQM E + ++  E   +P+DF Y  +P LSNE+K+KL+ L+P  L  AS+I G+TP
Sbjct: 64  GYINRQMDEIERLRRHEMTRLPEDFVYDDIPGLSNEVKQKLNDLRPETLAAASRIPGVTP 123

Query: 604 AALNLLLIYIKKN 616
           AA++LLLI +KK 
Sbjct: 124 AAVSLLLIQLKKR 136


>gi|219685811|ref|ZP_03540620.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
 gi|219672644|gb|EED29674.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Borrelia garinii Far04]
          Length = 128

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/117 (52%), Positives = 79/117 (67%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGGHAG EAA   ++L   T +IT    TIG +SCNPAIGGL KG++VREIDA
Sbjct: 2   DFDAIVIGGGHAGIEAALALSRLNFKTLMITQNLDTIGKLSCNPAIGGLAKGNMVREIDA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           L G MGR+ D + IQFRVLN  +GPAV+ PR QAD+ +Y+   +  +  Q  L   +
Sbjct: 62  LGGEMGRIIDFSMIQFRVLNKSRGPAVQAPRAQADKLMYQTKAKETLERQTILIFFK 118


>gi|213026621|ref|ZP_03341068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 120

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 506 EFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           + L  P+ +   L S+   A         E+++I+  Y  Y  RQ  E ++    E  L+
Sbjct: 2   DLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLL 61

Query: 565 PKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
           P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++K
Sbjct: 62  PATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLK 111


>gi|225571869|ref|ZP_03780739.1| hypothetical protein CLOHYLEM_07843 [Clostridium hylemonae DSM
           15053]
 gi|225159474|gb|EEG72093.1| hypothetical protein CLOHYLEM_07843 [Clostridium hylemonae DSM
           15053]
          Length = 127

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 497 QDGKTRTAYEFLSYPDFSIQNLFSICP----DARKFSSLVIERLQIESSYAAYTGRQMIE 552
                 T  E +  P+ S + L  I              +IE++ I   Y  Y  RQ  +
Sbjct: 5   PLNSGTTLAELIRRPELSYEALRPIDKKRPVFPEGLEEEIIEQVNISIKYDGYIKRQEKQ 64

Query: 553 AKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIY 612
            ++ K  EKR IP++ DY  + +L  E  +KL   +P ++ QAS+I G++PA +++LL+Y
Sbjct: 65  VEQFKKLEKRKIPENIDYDDIKSLRIEAVQKLKEYRPVSIGQASRISGVSPADISVLLVY 124

Query: 613 I 613
           +
Sbjct: 125 L 125


>gi|42560917|ref|NP_975368.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81618854|sp|Q6MTM6|TMFO1_MYCMS RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 1; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           1; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 1
 gi|42492414|emb|CAE77010.1| glucose-inhibited division protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320811|gb|ADK69454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
          Length = 424

 Score =  153 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 158/493 (32%), Gaps = 98/493 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------------KG 56
           +IG G +GCEAA    K G    L   KT     +        L               G
Sbjct: 6   IIGAGLSGCEAAYYLLKKGYFVELYEIKTIKKNPIQHYDYFCELAYSDSFRSTDLNTSVG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E++ LD L+ + A  A I             +      +R  +   +   + +  N
Sbjct: 66  TLKKELELLDSLIIKAAKYASIN------------QNNELVVNRIEFSKYITNYLKTFNN 113

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG---R 173
           L +I+ E    +     I +I      +   S +        +  + +     P      
Sbjct: 114 LKIIEQEYLNIDLNIPTIIAI----GPISTPSFLTNLKKIINKKNLKLFDTVEPTILKQS 169

Query: 174 MGDSPSNSLFNSFMKFDFDTG--RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           +  +   SL N+      D    + +    A +  KT       +    E+   FS  + 
Sbjct: 170 INKNICYSLDNNLDYLYCDLNKEQFEKFYNALISAKTFNSPLKNEIKLLEKNNYFSIES- 228

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
               +  +  I        + I  N   +                               
Sbjct: 229 --LAKNKQEFINH-----FKPINNNAYIT------------------------------- 250

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
            I L+ + +  ++       T+L    Q +    IPGLE + I+R G   + +YIN K+L
Sbjct: 251 -ITLKKDSVIDNLYTIVNFQTSLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKL 309

Query: 352 FP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
               ++ K    +F AGQI G  GY E+   GL++ IN  R  N    +     +S IG 
Sbjct: 310 LNLGVQLKTNKNIFFAGQIIGVDGYVESVCSGLISAINLDRYLNNKK-MILPNKNSTIGS 368

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           + + L                    +  P   +  L  +  G +L    ++   +     
Sbjct: 369 LYNYLLKTDS---------------NFNPMRINWALVDLIDGFELSDNSKKFYSK----- 408

Query: 469 QEYNFLRSLLKSL 481
           +    ++  LK +
Sbjct: 409 RAIELIKQYLKKI 421


>gi|133723117|gb|ABO37805.1| GidA [Lactococcus garvieae]
          Length = 160

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFL 365
             G  T L    Q +  + IPGLE    +R G      Y++ P  L  T +++K   LF 
Sbjct: 1   IVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSRKQENLFF 60

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQ+ G  GY E+AA GLVAGIN+AR  N  + I F +T + IG +   +T         
Sbjct: 61  AGQMTGVEGYVESAASGLVAGINAARLFNGEEEIIFPQTTA-IGALPYYITHTDSKH--- 116

Query: 426 MFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
                       +P N    +     G ++    ER  K   + +++ + +   +
Sbjct: 117 -----------FQPMNVTFGIVKELDGPRIRDKKERYTKVAERALEDLSQIIEKM 160


>gi|256383910|gb|ACU78480.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384741|gb|ACU79310.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455963|gb|ADH22198.1| methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
           2 [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 424

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 157/490 (32%), Gaps = 92/490 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------------KG 56
           +IG G +GCEAA    K G    L   KT     +        L               G
Sbjct: 6   IIGAGLSGCEAAYYLLKKGYFVELYEIKTIKKNPIQHYDYFCELAYSDSFRSTDLNTSVG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E++ LD L+ + A  A I             +      +R  +   +   + +  N
Sbjct: 66  TLKKELELLDSLIIKAAKYASIN------------QNNELVVNRIEFSKYITNYLKTFNN 113

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L +I+ E    +     I +I              ++T +FL  + ++   +        
Sbjct: 114 LKIIEQEYLNIDLNIPTIIAI------------GPISTPSFLNKLENLINKENLKLFDSV 161

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            P+    +  M   +            LD      +K + +     LI        + N 
Sbjct: 162 EPTILKQSINMDICYSL-------DNNLDYLYCDLNKEQFEKFYNALISAKIFISPLKNE 214

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE 296
                    N  +   + +N +    Y   I                     N   I + 
Sbjct: 215 IKLLEKN--NYFSIESLAKNKQEFINYFKPIN--------------------NNAYITIR 252

Query: 297 --PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP- 353
              + +  ++       T+L    Q +    IPGLE + I+R G   + +YIN K+L   
Sbjct: 253 LKKDSVINNLYTIVNFQTSLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNL 312

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            ++ K    +F AGQI G  GY E+   GLV+ IN  R  N    +     +S IG +  
Sbjct: 313 GVQLKTNKNIFFAGQIIGVDGYVESVCSGLVSAINLDRYLNNKK-MILPNKNSTIGSLYH 371

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQEY 471
            L                    +  P   +  L  +  G +L    ++   +     +  
Sbjct: 372 YLLKTDT---------------NFSPMRINWALVDMIDGFELSDTSKKFYSK-----RAI 411

Query: 472 NFLRSLLKSL 481
             ++  LK +
Sbjct: 412 QLIKQYLKKI 421


>gi|20799574|gb|AAM28552.1|AF494528_1 glucose inhibited division protein A 3 [Tomato big bud phytoplasma]
          Length = 183

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 4/187 (2%)

Query: 407 YIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAK 466
           Y GV+IDDL +KG   PYR+ TSRAE+R+ LR DNAD RL P G K G I  +       
Sbjct: 1   YXGVLIDDLINKGTYXPYRLLTSRAEFRLLLRHDNADLRLMPYGFKFGLIDHKTFDWLKN 60

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDAR 526
              + N+L+  L +  L + +L   +I    D +  + Y+ L   D     L +    A 
Sbjct: 61  KQMQINYLKEKLHNFYLDADSLYKFNI--NSDSRRISLYQLLKRSDLKEDILNNFF--AS 116

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
           ++S  V+E++ I+  Y  Y  +   E K+    E+++IP + DY  +  LS E KEK   
Sbjct: 117 QYSVDVLEQVGIQIKYEDYILKSEKEVKKNSHLEEKVIPNNIDYKIIKNLSQEAKEKXXK 176

Query: 587 LKPFNLL 593
           +KPFN+ 
Sbjct: 177 IKPFNIA 183


>gi|332976747|gb|EGK13578.1| tRNA:M(5)U-54 methyltransferase [Desmospora sp. 8437]
          Length = 241

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 22/238 (9%)

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D   +   T  LTT    R +  +   +        +P     +  M   F   R   G 
Sbjct: 23  DGITVIA-TGPLTTDALSREIRKLTGEEHLYFYDAAAPIVEKDSIDMDKAFIASRYGKGE 81

Query: 201 PARLDGKT--IIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIK 258
            A ++       +++  +   +  + P          ++ E  I         ++     
Sbjct: 82  AAYINCPMTEAEFNRFYEALVEAEVSP---------LKEFEKEIYFEGCMPIEVM----- 127

Query: 259 HSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEI 318
             A   G    YGP     + D   R G++    + L  +     +    G  T L    
Sbjct: 128 --ARRGGKTILYGPMKPVGLIDP--RTGKQPYAVVQLRQDNGAGTLYNLVGFQTHLKWGE 183

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGY 375
           Q + +R IPGLE+  I+R G      +IN P+ L PT + ++   LF AGQ+ G  GY
Sbjct: 184 QKRILRMIPGLEQAEIVRYGVMHRNTFINSPRALLPTYQFRERKDLFFAGQMTGVEGY 241


>gi|331703367|ref|YP_004400054.1| methylenetetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801922|emb|CBW54075.1| Methylenetetrahydrofolate tRNA (uracil 5 ) methyltransferase
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 424

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 149/478 (31%), Gaps = 68/478 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           +IG G +GCEAA    K G    L   KT     +        L      R  D    + 
Sbjct: 6   IIGAGLSGCEAAYYLLKKGYFVELYEIKTIKKNPIQHYDYFCELAYSDSFRSTDLNTSVG 65

Query: 70  GRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               +   +   ++   K     +      +R  +   +   + +  NL +I+ E    +
Sbjct: 66  TLKKELELLDSLIIKAAKYASISQNNELVVNRIEFSKYITNYLKTFNNLKIIEQEYLNID 125

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
                I +I              L     L+ +    +  I    +  +   SL N+   
Sbjct: 126 LNIPTIIAIGPISTPSFLNKLENLINKENLK-LFDSVEPTILKQSINTNICYSLDNNLDY 184

Query: 189 FDFDTG--RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
              D    + +    A +  K        +    E+   FS  +     +  +  I    
Sbjct: 185 LYCDLNKEQFEKFYNALISAKIFNSPLKNEIKLLEKNNYFSIES---LAKNKQEFINH-- 239

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
               + I  N   +                                I L+ + +  ++  
Sbjct: 240 ---FKPINNNAYIT--------------------------------ITLKKDSVINNLYT 264

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFL 365
                T L    Q +    IPGLE + I+R G   + +YIN K+L    ++ K    +F 
Sbjct: 265 IVNFQTNLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKLLNLGVQLKTHKNIFF 324

Query: 366 AGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYR 425
           AGQI G  GY E+   GL++ IN  R  N    +     +S IG + + L          
Sbjct: 325 AGQIIGVDGYVESVCSGLISAINLDRYLNNKK-LILPNKNSTIGSLYNYLLKTDS----- 378

Query: 426 MFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQEYNFLRSLLKSL 481
                     +  P   +  L  +  G +L    ++   +     +    ++  LK +
Sbjct: 379 ----------NFSPMRINWALVDMIDGFELSDNSKKFYSK-----RAIQLIKQYLKKI 421


>gi|313665486|ref|YP_004047357.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
 gi|312949558|gb|ADR24154.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Mycoplasma leachii PG50]
          Length = 423

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 84/493 (17%), Positives = 151/493 (30%), Gaps = 98/493 (19%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------------KG 56
           +IG G +GCEAA    K G    +   KT     +        L               G
Sbjct: 6   IIGAGLSGCEAAYYLLKKGYFVEMYEIKTIKKNPIQHYDFFSELAYSDSFRSTDLKTSVG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E++ LD L+ +      +             +      +R  +   +   + +  N
Sbjct: 66  TLKKELELLDSLIIKATKHTSLN------------KSNELIVNRIEFGNYITNYLKTFNN 113

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG---R 173
           L +I+ E    N     I +I      +   + +        +  + +     P      
Sbjct: 114 LKIIEQEYLNINFNIPTIIAI----GPISTPNFLTNLKKLINKKNLKLFDTVEPTILKQS 169

Query: 174 MGDSPSNSLFNSFMKFDFDTG--RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           +      SL N+      D    + +    A +  K  I     +    E+   FS  + 
Sbjct: 170 INMDTCYSLDNNLNYLYCDLNKEQFEKFYNALISAKIFISPLKNEIKLLEKNNYFSVESL 229

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
               ++        N  T+  I                                      
Sbjct: 230 AKNKQEFINHFKPKNNSTYITI-------------------------------------- 251

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKEL 351
              L+ + +  ++       T L    Q +    IPGLE + I+R G   + +YIN K+L
Sbjct: 252 --TLKKDSVIDNLYTIVNFQTNLMWNEQLKVFSLIPGLENLKIMRYGVMHKNNYINTKKL 309

Query: 352 FP-TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
               ++ K    +F AGQI G  GY E+   GL+  IN  R  N    +     +S IG 
Sbjct: 310 LNLGVQLKTHKNIFFAGQIIGVDGYVESVCSGLITAINLDRYLNNKK-MILPNKNSTIGS 368

Query: 411 MIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYI 468
           + + L                       P   +  L  +  G +L    +++  +     
Sbjct: 369 LYNYLLKTDSD---------------FSPMRINWALVDMINGFELSDNSKKKYSK----- 408

Query: 469 QEYNFLRSLLKSL 481
           +    ++  LK +
Sbjct: 409 RAIKLIKQYLKKI 421


>gi|169836600|ref|ZP_02869788.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 148

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 12/142 (8%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP++GG  K HL +E+DAL G +GR  D + +Q R+LN KKGPAVR  R QADR++Y
Sbjct: 1   MSCNPSVGGPAKSHLAKEVDALGGEIGRNMDKSFVQMRILNTKKGPAVRSLRAQADRKIY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTE------------KNIISSIVMQDNSMIRCSTVV 151
              M++ I  QENLD++Q  V     +            + ++  I  +         VV
Sbjct: 61  AREMKKTIEHQENLDIVQDIVTELIVDEVEIDEKGSKRIEKVVRGIKTKTGMEFFAKAVV 120

Query: 152 LTTGTFLRGVIHIGKLKIPAGR 173
           L TGTFLRG+++IG  ++  GR
Sbjct: 121 LATGTFLRGLLYIGDKRVKGGR 142


>gi|83319831|ref|YP_424581.1| tRNA (uracil-5-)-methyltransferase Gid [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
 gi|123535603|sp|Q2SRN2|TMFO2_MYCCT RecName: Full=Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase TrmFO 2; AltName:
           Full=Folate-dependent tRNA (uracil-5-)-methyltransferase
           2; AltName: Full=Folate-dependent
           tRNA(M-5-U54)-methyltransferase 2
 gi|83283717|gb|ABC01649.1| glucose-inhibited division protein, putative [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 423

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 156/490 (31%), Gaps = 92/490 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-------------KG 56
           +IG G +GCEAA    K G    L   KT     +        L               G
Sbjct: 6   IIGAGLSGCEAAYYLLKKGYFVELYEIKTIKKNPIQHYDYFCELAYSDSFRSTDLNTSVG 65

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            L +E++ LD L+ + A  A I             +      +R  +   +   + +  N
Sbjct: 66  TLKKELELLDSLIIKAARYASIN------------QNNELVVNRIEFSKYITNYLKTFNN 113

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           L +I+ E    +     I +I          +   L     L+ +    +  I    +  
Sbjct: 114 LKIIEQEYLNIDLNIPTIIAIGPISTPNFLTNLKKLINKENLK-LFDTVEPTILKQSINM 172

Query: 177 SPSNSLFNSFMKFDFDTG--RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
               SL N+      D    + +    A +  KT       +    E+   FS  +    
Sbjct: 173 DICYSLDNNLNYLYCDLNKEQFEKFYNALISAKTFNSPLKNEIELLEKNNYFSIES---L 229

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            +  +  I        + I  N   +                                I 
Sbjct: 230 AKNKQEFINH-----FKPINNNAYIT--------------------------------IT 252

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP- 353
           L+ + +  ++       T L    Q +    IPGLE + I++ G   + +YIN K+L   
Sbjct: 253 LKKDSVINNLYTIVNFQTNLMWNEQLKVFSLIPGLENLKIMKYGVMHKNNYINTKKLLNL 312

Query: 354 TLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
            ++ K    +F AGQI G  GY E+   GL++ IN  R  N    I     +S IG + +
Sbjct: 313 GVQLKTNKNIFFAGQIIGVDGYVESVCSGLISAINLDRYLNNKKMII-PNKNSTIGSLYN 371

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI--GMKLGCIGERRQKRFAKYIQEY 471
            L                    +  P   +  L  +  G +L    ++   +     +  
Sbjct: 372 YLLKTDS---------------NFSPMRINWALVDMIGGFELSDNSKKIYSK-----RAI 411

Query: 472 NFLRSLLKSL 481
             ++  LK +
Sbjct: 412 KLIKQYLKKI 421


>gi|269863877|ref|XP_002651378.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit
           GidA, predicted [Enterocytozoon bieneusi H348]
 gi|220064641|gb|EED42679.1| tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit
           GidA, predicted [Enterocytozoon bieneusi H348]
          Length = 133

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/132 (56%), Positives = 90/132 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+DVIV+GGGHAG EAAA AA+LG  T L+T    TIG MSCNPAIGG+GKGHLV+E
Sbjct: 1   MQNSFDVIVVGGGHAGTEAAAAAARLGVRTLLLTQNLDTIGQMSCNPAIGGIGKGHLVKE 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +DAL G+M    D AGIQFR LN  KGPAVR  R QADR LY+ A++R +     L + Q
Sbjct: 61  VDALGGIMALAIDQAGIQFRTLNASKGPAVRATRAQADRSLYKRAVRRLLEDIPALQLFQ 120

Query: 122 GEVAGFNTEKNI 133
           G V     E + 
Sbjct: 121 GMVGDLLMEGDR 132


>gi|289808878|ref|ZP_06539507.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 96

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 77/96 (80%)

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQG 382
           +R++ G+E   I+RPGYAIEYD+ +P++L PTLE+K I GLF AGQINGTTGYEEAAAQG
Sbjct: 1   VRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQG 60

Query: 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           L+AG+N+AR S   +    +R+ +Y+GV++DDL ++
Sbjct: 61  LLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTR 96


>gi|124516261|gb|EAY57769.1| putative glucose-inhibited division protein A [Leptospirillum
           rubarum]
          Length = 427

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 128/439 (29%), Gaps = 74/439 (16%)

Query: 35  THKTSTIGSMSCNPAI----GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            HKT  +G + C+ ++         G L  E+      +   A    I            
Sbjct: 9   AHKTPLLGELVCSNSLKSLSAQTPHGLLKEELLKSGSPVIESAMECRI------------ 56

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
             G     DR+ +   +   +LS   + V +  V     ++ +I    +    +   S V
Sbjct: 57  PGGGALVVDRDAFARRLTDRVLSHPRIRVERRLVDRLPADRPLI----LATGPLTHPSLV 112

Query: 151 VLTTGTFLRGVIHIGKLKIPA--------GRMGDSPSNSL--FNSFMKFDFDTGRLKTGT 200
              T     G +       P         GR+     +             D    +   
Sbjct: 113 EDLTTHLPGGRLSFYDAIAPIVEADSLDFGRLFRGDRHGTPGSGDHWNAPMDRETYERFC 172

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
            A L+G+ +                    + ++      C              + I+  
Sbjct: 173 EALLEGEQV------------PPHEGVEDSPEVLRAFQAC--------------QPIESL 206

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A       ++GP     + D     G      + L PE  +       G  T L    Q 
Sbjct: 207 AETGRQTLAFGPLRPVGLVDP--STGREPYAVVQLRPEDADESAFNLVGFQTRLRYPEQE 264

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +  R IPGLE+   +R G      +++ P  L   L    + G++  GQI G  GY E+ 
Sbjct: 265 RIFRMIPGLEQARFLRHGSLHRNTFLDAPALLKDDLTLSGLPGVYATGQILGVEGYTESV 324

Query: 380 AQGLVAGINSARKSNKLDCI------CFSRTDSYIGVMIDDLTSKGVLEPYR---MFTSR 430
             G +  +                       ++ +G ++  L+      P R        
Sbjct: 325 TMGFLTALVLDGAWASDTPWTFDAKMILPPAETAMGALLSGLS------PRRSGAFAPVN 378

Query: 431 AEYRISLRPDNADNRLTPI 449
             + +  RP  A +R  P 
Sbjct: 379 LHFGLFPRPSGATSRRIPR 397


>gi|222874800|gb|EEF11931.1| predicted protein [Populus trichocarpa]
          Length = 95

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 72/95 (75%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+GGGHAG EAA  AA++G  T L++H   T+G MSCNP+IGG+GKGHLV+E+DAL
Sbjct: 1   FDVIVVGGGHAGTEAALAAARMGCRTLLLSHNIETLGQMSCNPSIGGIGKGHLVKEVDAL 60

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
            G M    D  GIQFR+LN  KGPAVR  R QADR
Sbjct: 61  GGAMALATDIGGIQFRILNSSKGPAVRATRAQADR 95


>gi|313635547|gb|EFS01764.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria seeligeri FSL N1-067]
          Length = 101

 Score =  143 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 58/92 (63%)

Query: 527 KFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
             +  V E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  
Sbjct: 5   SVTDDVAEQVEIQVKYEGYIQKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKK 64

Query: 587 LKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++P ++ QAS+I G+ PA +++LL+YI++  +
Sbjct: 65  IEPLSIAQASRISGVNPADISILLVYIEQGKI 96


>gi|315305257|ref|ZP_07875213.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria ivanovii FSL F6-596]
 gi|313626379|gb|EFR95556.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria ivanovii FSL F6-596]
          Length = 100

 Score =  143 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 58/91 (63%)

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +  V E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  +
Sbjct: 6   VTDDVAEQVEIQVKYEGYIEKSKLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKI 65

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P ++ QAS+I G+ PA +++LL+YI++  +
Sbjct: 66  EPLSIAQASRISGVNPADISILLVYIEQGKI 96


>gi|206603102|gb|EDZ39582.1| putative glucose-inhibited division protein A [Leptospirillum sp.
           Group II '5-way CG']
          Length = 427

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 128/439 (29%), Gaps = 74/439 (16%)

Query: 35  THKTSTIGSMSCNPAI----GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
            HKT  +G + C+ ++         G L  E+      +   A    I            
Sbjct: 9   AHKTPLLGELVCSNSLKSLSAQTPHGLLKEELLKSGSPVIESAMECRI------------ 56

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
             G     DR+ +   +   +LS   + V +  V     ++ +I    +    +   S V
Sbjct: 57  PGGGALVVDRDAFARRLTDRVLSHSRIRVERRLVDRLPADRPLI----LATGPLTHPSLV 112

Query: 151 VLTTGTFLRGVIHIGKLKIPA--------GRMGDSPSNSL--FNSFMKFDFDTGRLKTGT 200
              T     G +       P         GR+     +             D    +   
Sbjct: 113 EDLTTHLPGGRLSFYDAIAPIVEADSLDFGRLFRGDRHGTPGSGDHWNAPMDRETYERFC 172

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
            A L+G+ +                    + ++      C              + I+  
Sbjct: 173 EALLEGEQV------------PPHEGVEDSPEVLRAFQAC--------------QPIESL 206

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A       ++GP     + D     G      + L PE  +       G  T L    Q 
Sbjct: 207 AETGRQTLAFGPLRPVGLVDP--STGREPYAVVQLRPEDADESAFNLVGFQTRLRYPEQE 264

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           +  R IPGLE+   +R G      +++ P  L   L    + G++  GQI G  GY E+ 
Sbjct: 265 RIFRMIPGLEQARFLRHGSLHRNTFLDAPALLKDDLTLSGLPGVYATGQILGVEGYTESV 324

Query: 380 AQGLVAGINSARKSNKLDCI------CFSRTDSYIGVMIDDLTSKGVLEPYR---MFTSR 430
             G +  +                       ++ +G ++  L+      P R        
Sbjct: 325 TMGFLTALVLDGAWASDTPWTFDAKMILPPAETAMGALLSGLS------PRRSGAFAPVN 378

Query: 431 AEYRISLRPDNADNRLTPI 449
             + +  RP  A +R  P 
Sbjct: 379 LHFGLFPRPSGATSRRIPR 397


>gi|110004175|emb|CAK98513.1| probable gid protein c-terminal truncated [Spiroplasma citri]
          Length = 340

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 138/379 (36%), Gaps = 63/379 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG 54
           +  ++ VIG G AGCE A   AKLG    L            K  T   + C+ +   + 
Sbjct: 2   KQKEINVIGAGLAGCEIAYQLAKLGLKVKLYEAKTLFKNPVQKLDTFAELVCSNSFRSVS 61

Query: 55  K----GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
           K    G L  E+  LD L+ + A    I                    DREL+   +   
Sbjct: 62  KENAIGILKEELKLLDSLILKTAYDVQI------------TADDALSVDRELFSQKVTAT 109

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           +++  N+++I  E    + ++  I ++      ++  +         L+ +I    L   
Sbjct: 110 LINHPNINIIYDEFIKIDPKQITIIAV----GPLVTANFAFE-----LKKLIGKKALCYY 160

Query: 171 AG--RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            G   +          ++            G         II   TE +F          
Sbjct: 161 DGSAPIITKAGIVFSKAYY-----------GARHSEQKDYIICPLTEDEF-------NQL 202

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
           +T+ +  +++       + E +    + I+  A  S  I   GP     +   I + G++
Sbjct: 203 VTELVKAKRVP----IADFEKYFKGYQPIEIMAQTSRKILLNGPMSSNHL---IGKNGKQ 255

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYIN 347
               + L  + +   +    G  T L    Q + I+  IPGL KV+I+R G   + +YIN
Sbjct: 256 PFEVVQLRQDNVIDSLYNLVGWQTNLTWPEQKRIIKQFIPGLAKVDIVRYGVLHKNNYIN 315

Query: 348 -PKELFPTLETKKISGLFL 365
            PK L   L+ K+ +  FL
Sbjct: 316 SPKVLNQFLQYKQNNNFFL 334


>gi|313621867|gb|EFR92548.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria innocua FSL J1-023]
          Length = 101

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 58/91 (63%)

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +  + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  +
Sbjct: 6   VTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKI 65

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P ++ QAS+I G+ PA +++LL+YI++  +
Sbjct: 66  EPLSIAQASRISGVNPADISILLVYIEQGKI 96


>gi|315284186|ref|ZP_07872090.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria marthii FSL S4-120]
 gi|313612170|gb|EFR86408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria marthii FSL S4-120]
          Length = 96

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 58/90 (64%)

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           +  + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++
Sbjct: 2   TDEIAEQVEIQVKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIE 61

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           P ++ QAS+I G+ PA +++LL+YI++  +
Sbjct: 62  PLSIAQASRISGVNPADISILLVYIEQGKI 91


>gi|313616450|gb|EFR89360.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria innocua FSL S4-378]
          Length = 103

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 58/91 (63%)

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
            +  + E+++I+  Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  +
Sbjct: 8   VTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKI 67

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           +P ++ QAS+I G+ PA +++LL+YI++  +
Sbjct: 68  EPLSIAQASRISGVNPADISILLVYIEQGKI 98


>gi|149572464|ref|XP_001516759.1| PREDICTED: similar to MTO1 [Ornithorhynchus anatinus]
          Length = 200

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 8/119 (6%)

Query: 29  ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
             T L+ H    +G MSCNP+ GG+GKGHL+RE+DALDGL GR+ D +G+ ++VLN +KG
Sbjct: 64  CRTLLLNHHVHPLGQMSCNPSFGGIGKGHLMREVDALDGLCGRICDLSGVHYKVLNRRKG 123

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--------EKNIISSIVM 139
           PAV G R Q DR+LY+  MQREIL+   L V +  V              K  +S +V+
Sbjct: 124 PAVWGLRAQIDRKLYKQNMQREILNTPLLTVQEASVEDLILTKPDSGYPGKCRVSGVVL 182


>gi|303328649|ref|ZP_07359051.1| gid protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861241|gb|EFL84213.1| gid protein [Desulfovibrio sp. 3_1_syn3]
          Length = 236

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 13/235 (5%)

Query: 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK-TGTPARLDG 206
           +   L +G     +      +        +P     +  M   F   R           G
Sbjct: 13  AAGPLASGELSASLARTLGAEHCYFYDAIAPIVWTHSLDMNVVFRASRYDCENGEPAGQG 72

Query: 207 KTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
             +    + +++  E          K+  R  E        ETH      ++  A     
Sbjct: 73  DYLNCPMSREEY--EIFYQALLEARKVEARAFE-------RETHFEGCMPVEALAERGPR 123

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
             ++GP       D   R G R    + L  E  N++     G  T L +  Q +  R +
Sbjct: 124 TLTFGPLKPVGFVDP--RTGRRPWAVLQLRAENANSETCNLVGCQTKLTQPEQARVFRLV 181

Query: 327 PGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAA 380
           PGLE+    R G      Y+N P+ L   L  K    +FLAGQI G  GY E+AA
Sbjct: 182 PGLERAEFARYGSMHRNTYVNAPEALNADLSLKTCPHVFLAGQITGVEGYVESAA 236


>gi|315282100|ref|ZP_07870586.1| methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Listeria marthii FSL S4-120]
 gi|313614252|gb|EFR87910.1| methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
           trmFO [Listeria marthii FSL S4-120]
          Length = 146

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEA 378
            +    IPGLE   I+R G      +IN P  L PT + K  + LF AGQ+ G  GY E+
Sbjct: 1   KRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAGQMTGVEGYVES 60

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           AA GL AGIN+A    + + + F   ++ IG +   +T              +  + S +
Sbjct: 61  AASGLAAGINAANFVEEKELVVFPA-ETAIGSLAHYIT--------------SASKKSFQ 105

Query: 439 PDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
           P N +  L P +  K+    ER +K   + +     +   L
Sbjct: 106 PMNVNFGLFPELETKIRAKQERNEKLAERALDAIKKVAEQL 146


>gi|254672743|emb|CBA06740.1| glucose inhibited division protein A [Neisseria meningitidis
           alpha275]
          Length = 118

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/92 (64%), Positives = 70/92 (76%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIV+GGGHAG EAA  AA++GA T L+TH   T+G MSCNP+IGG+GKGHLVRE+D
Sbjct: 19  KTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVRELD 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR 95
           AL G M    D +GIQFR LN  KG AVRG  
Sbjct: 79  ALGGAMALATDKSGIQFRRLNASKGAAVRGHA 110


>gi|195151125|ref|XP_002016498.1| GL10455 [Drosophila persimilis]
 gi|194110345|gb|EDW32388.1| GL10455 [Drosophila persimilis]
          Length = 154

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 83/148 (56%), Gaps = 7/148 (4%)

Query: 475 RSLLKSLVLTSKNL-SSTSISFKQDGKTRTAYEFLSYP--DFSIQNLFSICPDARKF--- 528
              L+ L   S     S  +   +    +TA++ L+ P  + ++  L ++ P    +   
Sbjct: 1   MEALRGLRKHSNYWRQSLDLPTSKASVEKTAFDMLAIPADNITVDKLINLFPTELSWLRD 60

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY-SSLPALSNELKEKLSIL 587
            + + ERL+IE+ Y+ +   Q  + ++++ EE+  IP D DY S + +LSNE ++KLS++
Sbjct: 61  DNNLAERLKIEALYSFFVEEQQRDVEDVRREERLAIPADIDYFSKVLSLSNEERQKLSLI 120

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKK 615
           +P  +  AS+I+G+TP+ +  ++ Y+KK
Sbjct: 121 QPQTIAAASRIQGVTPSTIVRIMKYVKK 148


>gi|407664|gb|AAD12347.1| uncertain [Mycoplasma genitalium]
          Length = 94

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           D +Y  G+ST+   EIQ + I+ +PG +   I + GYAIEYD     +L PTLETK I  
Sbjct: 2   DTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIEN 61

Query: 363 LFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           L+ AGQINGT+GYEEAA QGL+AGIN+A K
Sbjct: 62  LYFAGQINGTSGYEEAAGQGLMAGINAALK 91


>gi|315282098|ref|ZP_07870585.1| tRNA:M(5)U-54 methyltransferase [Listeria marthii FSL S4-120]
 gi|313614258|gb|EFR87915.1| tRNA:M(5)U-54 methyltransferase [Listeria marthii FSL S4-120]
          Length = 292

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 94/329 (28%), Gaps = 54/329 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA     K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEATWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  L+ ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILESIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + V   EV        +I             +T  LT+      +  +   +      
Sbjct: 113 PLVTVHTEEVTTIPEGPTVI-------------ATGPLTSPALAEEIKQLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +P     +  M   +   R   G  A L+       + E     E L+      +   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM---SEEEFNAFYEALVTA----ETAA 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF 294
            ++ E  +         ++       A        +GP     +ED   + G+R    + 
Sbjct: 213 LKEFEKEVFFEGCMPIEVM-------AKRGIKTMLFGPLKPVGLEDP--KTGKRPYAVLQ 263

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFI 323
           L  +     +    G  T L    Q +  
Sbjct: 264 LRQDDAAGTLYNMVGFQTHLKWGEQKRVF 292


>gi|260890747|ref|ZP_05902010.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
 gi|260859300|gb|EEX73800.1| glucose inhibited division protein A [Leptotrichia hofstadii F0254]
          Length = 136

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 496 KQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-----FSSLVIERLQIESSYAAYTGRQM 550
           +      T  E L  P  + Q++  I           F      ++++++ Y  Y  + +
Sbjct: 9   ESLKSGTTLKEILRRPKVTYQDIKYIAEIIENVPNLNFDDETEYQIEVQTKYEGYIAKAI 68

Query: 551 IEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
              ++ +  + + IPK+FDY ++  ++ E K++L   +P+N+ QAS++ G+TPA +++LL
Sbjct: 69  QIMEKQQKLDDKKIPKNFDYDNMKGITREAKQRLKENRPYNVGQASRMSGVTPADISVLL 128

Query: 611 IYI 613
           +Y+
Sbjct: 129 MYL 131


>gi|238612927|ref|XP_002398335.1| hypothetical protein MPER_01087 [Moniliophthora perniciosa FA553]
 gi|215474664|gb|EEB99265.1| hypothetical protein MPER_01087 [Moniliophthora perniciosa FA553]
          Length = 132

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 71/87 (81%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV VIGGGHAGCEAAA +A+ GA T L+T K  TIG +SCNP+IGG+GKG LVREIDAL
Sbjct: 33  YDVCVIGGGHAGCEAAAASARTGARTLLLTQKLDTIGELSCNPSIGGVGKGTLVREIDAL 92

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVR 92
           DGLMGRV+D AGIQF VLN  KG AV 
Sbjct: 93  DGLMGRVSDKAGIQFYVLNRPKGAAVW 119


>gi|309800198|ref|ZP_07694381.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus infantis SK1302]
 gi|308116169|gb|EFO53662.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid
           [Streptococcus infantis SK1302]
          Length = 141

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 325 TIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            IPGLE    +R G      Y++ P  L  T  +KK   LF AGQ+ G  GY E+AA GL
Sbjct: 1   MIPGLENAEFVRYGVMHRNSYMDSPNFLEQTYRSKKQPNLFFAGQMTGVEGYVESAASGL 60

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
           VAGIN+AR         F  T + IG +   +T                           
Sbjct: 61  VAGINAARLFKGESEAIFPETTA-IGSLAHYITHADSK---------------------- 97

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
               P+ +  G I E    R       Y  +   
Sbjct: 98  -HFQPMNVNFGIIKELEGDRIRDKKARYEKIAER 130


>gi|23013337|ref|ZP_00053245.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
 gi|46202424|ref|ZP_00208511.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 130

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
                + +     G +    + L  +     +    G  T L    Q +  R IPGLE  
Sbjct: 1   MKPVGLTNPN---GPKPFAVVQLRQDNALGTLYNLVGFQTKLRHGEQSRIFRAIPGLENA 57

Query: 333 NIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSAR 391
              R G      ++N P+ L  +L  K    L LAGQI G  GY E++A GL+AG+ +A 
Sbjct: 58  EFARLGGLHRNTFVNGPRVLDRSLRLKAQPRLRLAGQITGCEGYVESSAIGLLAGLFAAA 117

Query: 392 KSNKLDCI 399
           ++    C 
Sbjct: 118 EALGRRCC 125


>gi|269964324|ref|ZP_06178570.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269830940|gb|EEZ85153.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 138

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 426 MFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
           MFTSRAEYR+ LR DNAD RLT    +LG I + R  RF + I+     R  LKS  +  
Sbjct: 1   MFTSRAEYRLLLREDNADLRLTEKARELGLIDDVRWARFNEKIENMETERQRLKSTWMNP 60

Query: 486 KNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIESS 541
            +     ++        +  +  + L  P+ S   L  +   A         E+++I+  
Sbjct: 61  NSAGIDELNKLLKTPMAREASGEDLLRRPEISYSQLTQLDAFAPALEDQQASEQVEIQVK 120

Query: 542 YAAYTGRQMIEAKEI 556
           Y  Y  RQ  E ++I
Sbjct: 121 YDGYIKRQQEEIRKI 135


>gi|167951230|ref|ZP_02538304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 77

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 45/75 (60%)

Query: 544 AYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTP 603
            Y  RQ  E +  +  E   +P DFDY  +  LS E++EK    +P  L QA +I G+TP
Sbjct: 3   GYIERQRDEIERQRNNEAVQLPHDFDYDKVCGLSAEVREKFQRHRPETLGQAGRIPGITP 62

Query: 604 AALNLLLIYIKKNTV 618
           AAL+LLLI++K+ + 
Sbjct: 63  AALSLLLIHLKRRSA 77


>gi|313605983|gb|EFR83129.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
           [Listeria monocytogenes FSL F2-208]
          Length = 83

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 50/78 (64%)

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
            Y  Y  +  ++ +++K  E + IP++ DY ++  L+ E  EKL  ++P ++ QAS+I G
Sbjct: 1   MYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISG 60

Query: 601 MTPAALNLLLIYIKKNTV 618
           + PA +++LL+YI++  +
Sbjct: 61  VNPADISILLVYIEQGKI 78


>gi|167951231|ref|ZP_02538305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 144

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           +DDL ++G  EPYRMFTSRAEYR+ LR DNAD RLT  G KLG + + R   F++  +  
Sbjct: 1   MDDLITRGTSEPYRMFTSRAEYRLLLREDNADLRLTEQGRKLGLVDDHRWATFSRKRELL 60

Query: 472 NFLRSLLKSLVLTSKNL---SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF 528
              +  L+ L L    L          ++  +     + L+ P+    +L  +       
Sbjct: 61  EREQQRLRELWLHPNRLDPQQEERALGQRLSREVRLLDLLARPEVRYADLMDLPGLGPAV 120

Query: 529 -SSLVIERLQIESSYAA 544
               V E+L+I++ YA 
Sbjct: 121 ADPQVCEQLEIQAKYAG 137


>gi|301090002|ref|XP_002895249.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG,
           putative [Phytophthora infestans T30-4]
 gi|262101005|gb|EEY59057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG,
           putative [Phytophthora infestans T30-4]
          Length = 151

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 16/141 (11%)

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           MG+VADAAGIQFR+LN  KGPAVRGPR Q DR+LY+  +Q+ +    NL +++  V    
Sbjct: 1   MGQVADAAGIQFRMLNSAKGPAVRGPRAQMDRDLYQQGIQKALQELPNLWLVEDGVDDLM 60

Query: 129 TEKN---------IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMG--- 175
            EK           +  +V      I+ S VV+TTGTFLRG+I+ G  ++IPAGR     
Sbjct: 61  LEKINQSNDDVEERVKGVVTSSGREIQASQVVITTGTFLRGMIYQGPDIRIPAGRHMRDT 120

Query: 176 ---DSPSNSLFNSFMKFDFDT 193
              + P+  L  +  +  F  
Sbjct: 121 AGLEPPAVGLAQTLERCKFPL 141


>gi|213420626|ref|ZP_03353692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 102

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 48/102 (47%)

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +Q NL + Q  V     E + +   V Q     R   VVLT GTFL G IHIG      G
Sbjct: 1   NQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGG 60

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
           R GD PS  L     +      RLKTGTP R+D +TI +   
Sbjct: 61  RAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVL 102


>gi|77415236|ref|ZP_00791226.1| glucose-inhibited division protein A [Streptococcus agalactiae 515]
 gi|77158714|gb|EAO70035.1| glucose-inhibited division protein A [Streptococcus agalactiae 515]
          Length = 120

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            +     E   +  +    N      +VV+TTGT LRG I +G LK  +G      S +L
Sbjct: 1   MIDEILVEDGKVVGVRTATNQKFSAKSVVITTGTALRGEIILGDLKYSSGPNNSLASVTL 60

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT--DKITNRQIEC 240
            ++      + GR KTGTP R+   +I ++KTE Q  DE+   FSFM+  +     Q+ C
Sbjct: 61  ADNLRDLGLEIGRFKTGTPPRVKASSINYEKTEIQPGDEQPNHFSFMSRDEDYITDQVPC 120


>gi|40218204|gb|AAR83008.1| GidA [Escherichia coli]
          Length = 86

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/80 (66%), Positives = 64/80 (80%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GKGHLV+E+DAL
Sbjct: 7  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGGIGKGHLVKEVDAL 66

Query: 66 DGLMGRVADAAGIQFRVLNV 85
           GLM +  D AGIQFR+LN 
Sbjct: 67 GGLMAKAIDQAGIQFRILNA 86


>gi|315932331|gb|EFV11274.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 93

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 54/92 (58%)

Query: 529 SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
            +  +  +  E+ Y  Y   Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  K
Sbjct: 2   DNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHK 61

Query: 589 PFNLLQASKIEGMTPAALNLLLIYIKKNTVKL 620
           P  +  AS+I G+TPAAL++L IYIK    K 
Sbjct: 62  PPTIFAASQISGITPAALDILQIYIKMQKKKA 93


>gi|123242162|emb|CAM20958.1| mitochondrial translation optimization 1 homolog (S. cerevisiae)
           [Homo sapiens]
          Length = 98

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
           MSCNP+ GG+GKGHL+RE+DALDGL  R+ D +G+ ++VLN +KGPAV G R Q DR+LY
Sbjct: 1   MSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLY 60

Query: 104 RLAMQREILSQENLDVIQGEVAGFN 128
           +  MQ+EIL+   L V +G V    
Sbjct: 61  KQNMQKEILNTPLLTVQEGAVEDLI 85


>gi|148694451|gb|EDL26398.1| mitochondrial translation optimization 1 homolog (S. cerevisiae),
           isoform CRA_a [Mus musculus]
          Length = 150

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 65/104 (62%), Positives = 82/104 (78%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGGHAG EAAA AA+ G+ T L+TH+  TIG MSCNP+ GG+GKGHL+RE+DA
Sbjct: 35  HFDVVVIGGGHAGTEAAAAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDA 94

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           LDGL  R+ D +GI ++VLN +KGPAV G R Q DR+LY+  MQ
Sbjct: 95  LDGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQ 138


>gi|328949745|ref|YP_004367080.1| glucose-inhibited division protein A [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450069|gb|AEB10970.1| glucose-inhibited division protein A [Marinithermus hydrothermalis
           DSM 14884]
          Length = 227

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 38/205 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+++G G +G EAA   A+ GA   L+T    T+  +   P  G   +G L+ EI  
Sbjct: 2   EYDVLIVGAGFSGAEAAYALARRGARVGLMTQSLDTV-YLPFTPVPGPAPEGTLLAEI-- 58

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                                + G A                 +  + ++ NL + Q   
Sbjct: 59  --------------------WEAGIAPWEL---------HRKAKYALEAERNLHLFQSSA 89

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E   +  +   +         VL  G+FL   +++G +   AGR+ ++    L+ 
Sbjct: 90  TRLLVEAGRVVGVATWEGPRRLAEKTVLAVGSFLDPKLYVGMVVEAAGRLAEAAYPDLYE 149

Query: 185 SFMKFDF------DTGRLKTGTPAR 203
             ++  F      +    + G PA 
Sbjct: 150 DLVRHGFTFVTREEAVAAQEGQPAY 174


>gi|291297204|ref|YP_003508602.1| glucose-inhibited division protein A [Meiothermus ruber DSM 1279]
 gi|290472163|gb|ADD29582.1| glucose-inhibited division protein A [Meiothermus ruber DSM 1279]
          Length = 230

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDV+++G G AG EAA   A  G    L+T    ++  +   P      +G L+ 
Sbjct: 2   MWPVDYDVLIVGAGFAGSEAAYALANRGLRVGLVTTSLDSV-YLPFTPIQAPFPQGSLLA 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+         +                           R  YR      + +   + ++
Sbjct: 61  EVGEAGLKGWELH-------------------------SRAKYR------LENHPRIHLL 89

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           Q  V     E   +  +   +        VVL  G+FL   +HIG++   AGR+ +    
Sbjct: 90  QLSVTRLMLEGPAVVGLESWEGPRKTAPKVVLAVGSFLNPRLHIGQVVEEAGRLSEVAYP 149

Query: 181 SLFNSFMKFDFDTGRLKTGTPA 202
            L+    +  F     +   PA
Sbjct: 150 DLYQHLQQLGFAFSTYRAEVPA 171


>gi|315928770|gb|EFV08044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 74

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 47/72 (65%)

Query: 549 QMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608
           Q  + +++K   +  IP++FD+ S+  LSNE+ EKL+  KP  +  AS+I G+TPAAL++
Sbjct: 3   QKAQVEKMKNLSELKIPENFDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDI 62

Query: 609 LLIYIKKNTVKL 620
           L IYIK    K 
Sbjct: 63  LQIYIKMQKKKA 74


>gi|34763135|ref|ZP_00144104.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887198|gb|EAA24300.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 140

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 29/160 (18%)

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            IPGLE    IR G      +IN    L  TL  K    ++ AGQI G  GY  A A G+
Sbjct: 1   MIPGLENAEFIRYGVMHRNTFINSTKLLDKTLRLKNKDNIYFAGQITGGEGYVTAIATGM 60

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNAD 443
            A +N A +             S IG +++ +T +                         
Sbjct: 61  YAAMNIANRLENKKEFIL-EDISEIGAIVNYITEE------------------------K 95

Query: 444 NRLTPIGMKLGCI---GERRQKRFAKYIQEYNFLRSLLKS 480
            +  P+G   G I    E  + +  KY +        LK 
Sbjct: 96  KKFQPMGANFGIIKSLDENIRDKKEKYRKLSERAIEYLKK 135


>gi|302787479|ref|XP_002975509.1| hypothetical protein SELMODRAFT_415635 [Selaginella moellendorffii]
 gi|300156510|gb|EFJ23138.1| hypothetical protein SELMODRAFT_415635 [Selaginella moellendorffii]
          Length = 684

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 20/156 (12%)

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+            +Q RVLN  KGPAV   R Q D+  +   M++ + + ENL + +  
Sbjct: 478 AVGSHSQPNRPVCYLQRRVLNRSKGPAVWALRAQTDKREHAREMKKVVETTENLFIRESM 537

Query: 124 VAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           V        + +  +            VVLTT T + G I +G+  +  G          
Sbjct: 538 VTEVLVGRNDDVERVGTFFGVSFFAPAVVLTTRTLMNGKIWVGRKSMSTG---------- 587

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
                      G LKTGTPAR+D  T+   + E Q 
Sbjct: 588 ---------GAGELKTGTPARVDVWTVDTSRLESQP 614


>gi|294614819|ref|ZP_06694714.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
 gi|291592281|gb|EFF23895.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecium E1636]
          Length = 251

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 54/286 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V V+G G AG EAA   A+ G    L           H TS    + C+ ++ G      
Sbjct: 4   VNVVGAGLAGSEAAWQIAQAGVPVRLYEMRPVKSTEAHHTSNFAELVCSNSLRGNSLANA 63

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  LD ++   AD   +              G     DR+ +   + R++   
Sbjct: 64  VGLLKEEMRRLDSVVITSADETAV------------PAGGALAVDRDSFSETITRKVKEH 111

Query: 115 ENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             + VI  E+        ++ +  +              + G +             A  
Sbjct: 112 PLVTVINEEITEIPEGITVVATGPLTSHPLAESIKAFNGSDGFYFYD---------AAAP 162

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
           + D  +  +   ++K  +D G          +   +    TE++        F    + +
Sbjct: 163 IVDKATIDMDKVYLKSRYDKG----------EAAYLNCPMTEEE--------FKAFHEAL 204

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
            N ++    +    +        I+  A        +GP     +E
Sbjct: 205 INAEVAELKSFEKEKYFE-GCMPIEVMAQRGFKTMLFGPMKPVGLE 249


>gi|329727453|gb|EGG63909.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 229

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 45/234 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5   VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD A +              G     DR  +   +   + + 
Sbjct: 65  VGVLKEEMRRLNSIIIEAADKARV------------PAGGALAVDRHDFSGYITETLKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           EN+ VI  E+        II++  +          +V  TG   +  ++       A  +
Sbjct: 113 ENITVINEEINAIPDGYTIIATGPLTT--ETLAQEIVDITG---KDQLYFYD---AAAPI 164

Query: 175 GDSPSNSLFNSFMKFDFDTG------------RLKTGTPARLDGKTIIWDKTEK 216
            +  S  +   ++K  +D G                   A L+ +    +  EK
Sbjct: 165 IEKESIDMDKVYLKSRYDKGEAAYLNCPMTEDEFNRFYDAVLEAEVAPVNSFEK 218


>gi|213422763|ref|ZP_03355809.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E01-6750]
          Length = 75

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNP IGG+GKGHLV+E+DAL
Sbjct: 6  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPTIGGIGKGHLVKEVDAL 65

Query: 66 DGLMGRVADA 75
           GLM +  D 
Sbjct: 66 GGLMAKAIDQ 75


>gi|213417802|ref|ZP_03350912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 61

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 40/56 (71%)

Query: 563 LIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           ++P   DY  +  LSNE+  KL+  KP ++ QAS+I G+TPAA+++LL+++KK  +
Sbjct: 1   MLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM 56


>gi|313679201|ref|YP_004056940.1| glucose-inhibited division protein a [Oceanithermus profundus DSM
           14977]
 gi|313151916|gb|ADR35767.1| glucose-inhibited division protein A [Oceanithermus profundus DSM
           14977]
          Length = 231

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 36/217 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G G +G EAA   A+ G +  L+T    ++      P  G    G L+ E    
Sbjct: 4   YDVLVVGAGPSGSEAAWALARRGFAVGLVTDSLDSV-YRPEVPPEGAAPAGSLLAE---- 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                                            D        +  +   ENL ++Q  V 
Sbjct: 59  -----------------------------AASGDLWTLHRRAKYALEGLENLHLLQSSVV 89

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E+   + +   +   +R   VVL  G+FL   +  G L+  AGR+G++    L+  
Sbjct: 90  ALLLEEGRAAGVRTWEGFDLRAGAVVLAVGSFLGARLSAGALEEAAGRLGEAAYPDLYEH 149

Query: 186 FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFAD 220
                F       +           + + +      D
Sbjct: 150 LQGLGFAFVPDGYEVAAADGAPAYAVRFQRFAPGEWD 186


>gi|218512400|ref|ZP_03509240.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli 8C-3]
          Length = 155

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 341 IEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI 399
               YIN P  L P+L  K   GL  AGQI G  GY E+A+ GL+AG  +A +    + I
Sbjct: 3   HRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKG-EAI 61

Query: 400 CFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGER 459
                 + +G ++  +T   ++      T     + S +P N +  L P       +   
Sbjct: 62  LLPPATTALGSLLGHITGGHIV------TDEEPGKRSFQPMNINFGLFPELEPGSIVKPE 115

Query: 460 RQKRFAKYIQEY 471
             KRF    +  
Sbjct: 116 GVKRFRGKDKTI 127


>gi|110004406|emb|CAK98744.1| hypothetical glucose inhibited protein gid n-terminal truncated
           [Spiroplasma citri]
          Length = 149

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 325 TIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGL 383
            IPGL  V I+R G   + ++IN P  L   L+ KK   +F AGQI    GY E+AA G+
Sbjct: 1   MIPGLANVQIVRYGVIHKNNFINSPILLNQFLQVKKHHNIFFAGQIMDVEGYVESAATGI 60

Query: 384 VAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS--KGVLEPYR 425
           ++ +N  R  NK   + F   ++ +G +++ + +  K   +P +
Sbjct: 61  ISALNITRFLNKKSMLTFPP-ETMMGALVNYIVNASKTNFQPMK 103


>gi|282850775|ref|ZP_06260150.1| hypothetical protein HMPREF9209_1597 [Lactobacillus gasseri 224-1]
 gi|282558183|gb|EFB63770.1| hypothetical protein HMPREF9209_1597 [Lactobacillus gasseri 224-1]
          Length = 72

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 40/67 (59%)

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
               +   E + IP D DY+++P+L+ E ++K   ++P ++ QA +I G+ PA L +L  
Sbjct: 1   MVDRLHRLESKKIPVDIDYNAIPSLATEARQKFEKIRPESIAQAERISGVNPADLAILTA 60

Query: 612 YIKKNTV 618
           YI++  +
Sbjct: 61  YIQQGRI 67


>gi|34763134|ref|ZP_00144103.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887197|gb|EAA24299.1| Glucose inhibited division protein A [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 310

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 106/307 (34%), Gaps = 57/307 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG----GL 53
           +VIV+G G AG EAA   AK G    L           H       + C+ ++G      
Sbjct: 38  EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHSKDYYSELVCSNSLGSDSLEN 97

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G +  E+  L  L+  VAD            + PA +      DR+ +   +   + +
Sbjct: 98  ASGLMKEELRILGSLLIDVAD----------RNRVPAGQALA--VDRDGFSKEVTNILKN 145

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +N+++I+ E      +K +I             ++  LT+      +  I   +     
Sbjct: 146 TKNIEIIEEEFTEIPNDKIVII------------ASGPLTSDKLFEKISEITGEESLYFY 193

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +P  +  +  M   +   R   G     DG+ I     ++++       ++F  + I
Sbjct: 194 DAAAPIVTFESIDMNKAYFQSRYGKG-----DGEYINCPMNKEEY-------YNFYNELI 241

Query: 234 TNRQIECGITRTNLETHRII--MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
              + E      N E  ++      I+  A+      ++GP     + +   R  + +  
Sbjct: 242 KAERAEL----ENFEKEKLFDACMPIEKIAMSGEKTMTFGPLKPKGLINP--RTEKMDYA 295

Query: 292 QIFLEPE 298
            + L   
Sbjct: 296 VVQLRQM 302


>gi|320449295|ref|YP_004201391.1| glucose-inhibited division protein A [Thermus scotoductus SA-01]
 gi|320149464|gb|ADW20842.1| glucose-inhibited division protein A [Thermus scotoductus SA-01]
          Length = 232

 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 31/198 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + Y V+++G G AG EAA   A+ G    L+T    ++                      
Sbjct: 2   QDYQVLIVGAGFAGSEAAYRLAQRGVRVGLLTQSLDSVMMPF-----------LPPMPPF 50

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               L+ +V   A            P +           +    +  + +Q NL + Q  
Sbjct: 51  PEGSLLAQVYHPAD-----------PRLWA---------FHARAKYLLENQPNLHLFQAT 90

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E   +  +   +    R   VVL  G+FL   + +G+++  AGR+ ++    LF
Sbjct: 91  ATELLLEGKRVVGVGTWEGPPARAFHVVLAVGSFLGARLRMGEVEEEAGRLSEASYPDLF 150

Query: 184 NSFMKFDFDTGRLKTGTP 201
                  F   + +   P
Sbjct: 151 LHLQALGFRFLKREREVP 168


>gi|297623441|ref|YP_003704875.1| glucose-inhibited division protein A [Truepera radiovictrix DSM
           17093]
 gi|297164621|gb|ADI14332.1| glucose-inhibited division protein A [Truepera radiovictrix DSM
           17093]
          Length = 259

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            R +D++V+G G AG E A   A+ G    L+T    T+ ++  + A      G ++ E+
Sbjct: 7   TRPHDLLVVGAGLAGSELALTCARAGLDVLLVTTSLDTVCNLFGDGASLRPPPGTVLAEL 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            A  GL+   A  A +Q        G    G        L+R A    + +   L ++Q 
Sbjct: 67  VA--GLL--EAQEAQLQ------PDGSVYVGA-----WALHRRAKW-ALETHPKLHLLQS 110

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V+    E   +  +   +        V L  G+FL   + +G+L   AGR+ +   + L
Sbjct: 111 SVSALKLEAGRVVGVATWEGVDRLARCVALCAGSFLGARLRVGELTEAAGRLSEMAYDEL 170

Query: 183 FNSFMKFDFDTGRLKTGTPA 202
           F+          R +   PA
Sbjct: 171 FSDLRARGVAFERTERAAPA 190


>gi|23013336|ref|ZP_00053244.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Magnetospirillum magnetotacticum MS-1]
          Length = 249

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 77/238 (32%), Gaps = 15/238 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           V VIGGG AG EAA   A+    T L   +            +  L   + +R  D    
Sbjct: 5   VHVIGGGLAGSEAAWQLAQADIPTVLHEMRPVRTTPAHQTDGLAELVCSNSLRSDDADYN 64

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+  L   +  A  +     +  K PA  G     DR+ +   +Q  + S   + +++ E
Sbjct: 65  AVGLLHEEMRRAGSLILAQADAHKVPA--GGALAVDRDGFSQGVQAALSSHPRITIVREE 122

Query: 124 VAGFNTEKNIISSIVM--------QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           VAG   E      I           +          L     +  ++    +        
Sbjct: 123 VAGLPPEDWEQVVIATGPLTSPAMAEGLRELTGEASLAFFDAIAPIVTKDSIDFTKAWFQ 182

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-FADERLIPFSFMTDK 232
                   + ++    D  +      A + G+ + + + EK     E  +P   M ++
Sbjct: 183 SRYDKGTGSDYINCPLDKDQYYAFIEALITGEKVAFHEWEKDTPYFEGCLPIEVMAER 240


>gi|302823768|ref|XP_002993533.1| hypothetical protein SELMODRAFT_431601 [Selaginella moellendorffii]
 gi|300138664|gb|EFJ05425.1| hypothetical protein SELMODRAFT_431601 [Selaginella moellendorffii]
          Length = 626

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM 139
           RVLN  KGPAV   R Q D+  +   M++ + + ENL + +  V        + +  +  
Sbjct: 464 RVLNRSKGPAVWALRAQTDKREHAREMKKVVETTENLFIRESMVTEVLVGRNDDVEGVGT 523

Query: 140 QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                     VVLTT T + G I +G+  + AG  G+S S  L  +F
Sbjct: 524 FFGVSFFAPAVVLTTRTLMNGKIWVGRKSMSAGGAGESASQGLTENF 570



 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 22/29 (75%)

Query: 365 LAGQINGTTGYEEAAAQGLVAGINSARKS 393
             GQI GTTGYEEAAAQG VAG+NS R  
Sbjct: 570 FCGQIIGTTGYEEAAAQGFVAGVNSTRYF 598


>gi|67984129|gb|AAY84707.1| GidA [Vibrio mimicus]
          Length = 67

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+GKGHLV+
Sbjct: 2  LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGIGKGHLVK 61

Query: 61 EIDALD 66
          E+DA+ 
Sbjct: 62 EVDAMG 67


>gi|81428599|ref|YP_395599.1| hypothetical protein LSA0988 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610241|emb|CAI55290.1| Hypotehtical protein, GidA family (N-terminal fragment)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 257

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 87/298 (29%), Gaps = 55/298 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
           M  + + V VIG G AG EAA   AK G    L           H T     + C  ++ 
Sbjct: 1   MTTKPF-VNVIGAGLAGSEAAWQIAKRGVDVHLYEMRPVKMTPAHHTEQFAELVCTNSLR 59

Query: 52  G----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                   G +  E+  LD ++   AD   +              G     DR  +   +
Sbjct: 60  ANQVTNAAGLIKEEMRRLDSIIIAAADENAV------------PAGGALAVDRTPFSQTV 107

Query: 108 QREILSQENLDVIQGEVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
             ++ + E + V   E+  F     ++ +  +         S +  + G +         
Sbjct: 108 TDKLANHERVTVHHEELTAFPEGPTVVATGPLTSPGLAEEISALNGSEGLYFYD------ 161

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
               A  + D  S      ++K      R   G  A L+      +             F
Sbjct: 162 ---AAAPILDKNSIDFDKVYLK-----SRYDKGEAAYLNCPMTEAE-------------F 200

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
                 + + ++       + +        I+  A        +GP     +E+   R
Sbjct: 201 EAFYKALISAEVAEMHDFEDEKFFD-GCMPIEVMAKRGIKTMLFGPLKPVGLENPKTR 257


>gi|315271317|gb|ACO47267.2| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 252

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 68/215 (31%), Gaps = 28/215 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G G  G E A   A+ G    L++     +G++   P I G             
Sbjct: 17  YDVAVVGAGLGGTELAWRLARAGQDVLLVSQALDHLGTLY-QPTIQGA--------DFPQ 67

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             +  R AD                        D   +   ++ EI +   + ++Q  V 
Sbjct: 68  GSVFARTADQ------------------MAPDTDGWTFHRLLKAEIEATSGIHLLQSTVT 109

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E   +  I   +   +   TVVL  G FL+G + IG     AGR+ +   + L   
Sbjct: 110 ALDEEDTQVV-ISTWEGPKLHARTVVLAVGAFLKGRLLIGDTMEDAGRLSEVAYDFLAED 168

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
            +         +    A                 +
Sbjct: 169 LIASGVWLIGAEQTAAAVDGAPAYDVRFLTPAPGE 203


>gi|169839563|ref|ZP_02872751.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 67

 Score = 97.3 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARK 392
           +R GYA+EY+++   +L  TLETK + GL+ AG INGT+GYEEAA QG +AG+N+ARK
Sbjct: 1   VRYGYAVEYNFVPAHQLKLTLETKVLDGLYTAGTINGTSGYEEAACQGFIAGVNAARK 58


>gi|227554718|ref|ZP_03984765.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
 gi|227176149|gb|EEI57121.1| possible tRNA (uracil-5-)-methyltransferase Gid [Enterococcus
           faecalis HH22]
          Length = 192

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 38/213 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I S 
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKSH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   E+        II             +T  LT+ +  + +      +      
Sbjct: 113 PLITIKNEEITDIPEGIVII-------------ATGPLTSESLSQKIQEFNGSEGFYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGK 207
             +P        M   +   R   G  A L+  
Sbjct: 160 AAAPIIDKSTIDMDKVYLKSRYNKGEAAYLNCP 192


>gi|114611764|ref|XP_001175241.1| PREDICTED: similar to Mitochondrial translation optimization 1
           homolog, partial [Pan troglodytes]
          Length = 96

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 56/96 (58%)

Query: 141 DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           D S +   +V+LTTGTFLRG+I IG    PAGR+GD PS  L  +  K  F  GRLKTGT
Sbjct: 1   DGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGT 60

Query: 201 PARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
           P R+  ++I +    K   D   +PFSF  + +  +
Sbjct: 61  PPRIAKESINFSILNKHIPDNPSVPFSFTNETVWIK 96


>gi|218296060|ref|ZP_03496829.1| glucose-inhibited division protein A [Thermus aquaticus Y51MC23]
 gi|218243437|gb|EED09966.1| glucose-inhibited division protein A [Thermus aquaticus Y51MC23]
          Length = 232

 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 36/219 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y V+++G G +G EAA   A  G    L+T    ++  M   P      KG L+    A 
Sbjct: 4   YQVLIVGAGFSGAEAAFRLASQGVRVGLLTQSLDSV-MMPFLPPRPPFPKGSLLE--RAY 60

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D                    K P V           +    +  +  + NL + Q    
Sbjct: 61  D-------------------PKDPRVWA---------FHARAKYLLEGERNLHLFQATAT 92

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E   +  +   +        VVL  G+FL   + IG+++  AGR+ ++    L   
Sbjct: 93  GLLLEGERVVGVRTWEGPPALADRVVLAVGSFLGARLLIGEVEEEAGRLSEASYPDLLED 152

Query: 186 FMKFDFD-----TGRLKTGTPARLDGKTIIWDKTEKQFA 219
            +   F          +T +      + + +   E +  
Sbjct: 153 LLSLGFRFVEREGSVPETPSTPGYRVRYLAFHPEEWEEG 191


>gi|332855186|ref|ZP_08435737.1| hypothetical protein HMPREF0021_03326 [Acinetobacter baumannii
          6013150]
 gi|332727563|gb|EGJ58985.1| hypothetical protein HMPREF0021_03326 [Acinetobacter baumannii
          6013150]
          Length = 74

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG+GK HLVREID
Sbjct: 5  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNPAIGGIGKSHLVREID 64


>gi|313633477|gb|EFS00301.1| tRNA:M(5)U-54 methyltransferase [Listeria seeligeri FSL N1-067]
          Length = 207

 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 38/214 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA     K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEATWQLVKRGVEVDLYEMRPMKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD A                G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAADRA------------SVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             + +   EV        II             +T  LT+      +  +   +      
Sbjct: 113 PLVTIHTEEVTAIPAGPTII-------------ATGPLTSPALAEEIKRLTGEEYLYFYD 159

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
             +P     +  M   +   R   G  A L+   
Sbjct: 160 AAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPM 193


>gi|226357281|ref|YP_002787021.1| hypothetical protein Deide_22380 [Deinococcus deserti VCD115]
          Length = 234

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 28/211 (13%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+G G  G E A   A+ G    L++     +G++   P I G               + 
Sbjct: 3   VVGAGLGGTELAWRLARAGQDVLLVSQALDHLGTLY-QPTIQGA--------DFPQGSVF 53

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
            R AD                        D   +   ++ EI +   + ++Q  V   + 
Sbjct: 54  ARTADQ------------------MAPDTDGWTFHRLLKAEIEATSGIHLLQSTVTALDE 95

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           E   +  I   +   +   TVVL  G FL+G + IG     AGR+ +   + L    +  
Sbjct: 96  EDTQVV-ISTWEGPKLHARTVVLAVGAFLKGRLLIGDTMEDAGRLSEVAYDFLAEDLIAS 154

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
                  +    A                 +
Sbjct: 155 GVWLIGAEQTAAAVDGAPAYDVRFLTPAPGE 185


>gi|325284170|ref|YP_004256711.1| glucose-inhibited division protein A [Deinococcus proteolyticus
           MRP]
 gi|324315979|gb|ADY27094.1| glucose-inhibited division protein A [Deinococcus proteolyticus
           MRP]
          Length = 279

 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 31/206 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV ++G G AG E A   A+ G    L+T     +G++   P + G             
Sbjct: 40  YDVAIVGAGLAGSELALRLAEAGHDVLLVTQALDHVGNLY-APTLAGAAF--------PA 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  +G +A                        AD   +   ++  + S + L ++Q  V+
Sbjct: 91  DSHLGALAAE------------------LPQGADSWTFHRRLKARLESTDGLHLLQSTVS 132

Query: 126 GFNTEKNIISSIVMQDNS----MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             + E        ++  +     +     VL  G FL+G + +G     AGR+ +   + 
Sbjct: 133 SLDEEPAEDGGERLRLGTWEGPTLLARRAVLAVGAFLKGRLLVGDTMEDAGRLSEVAYDF 192

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGK 207
           L +   +             A     
Sbjct: 193 LADDLARSGVYLTGAAQEAAAVEGAP 218


>gi|218673087|ref|ZP_03522756.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli GR56]
          Length = 183

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 61/205 (29%), Gaps = 37/205 (18%)

Query: 1   MINRSYDVI-VIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAI 50
           M   SY  I V+GGG AG EAA   A  G    L           HKT  +  + C+ + 
Sbjct: 1   MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSF 60

Query: 51  G-----GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                     G +  E+     L+   AD                  G     DR+ +  
Sbjct: 61  RSDDATSNAVGVIHAEMRMAGSLIMAAADRH------------QVPAGGALAVDRDGFSE 108

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A+ + I     + V++ E+ G       ++ +              LT  +    +    
Sbjct: 109 AVTKAIHDHPLITVVREEITGLPPRDWDLAIVAT----------GPLTAPSLASAIQAQT 158

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFD 190
                A     +P     +  M   
Sbjct: 159 GEDSLAFFDAIAPIVYRDSIDMDIC 183


>gi|94986190|ref|YP_605554.1| glucose-inhibited division protein A [Deinococcus geothermalis DSM
           11300]
 gi|94556471|gb|ABF46385.1| Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme, GidA [Deinococcus geothermalis DSM
           11300]
          Length = 247

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 28/188 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G G AG E A   A+ G    L+T     +G++   P   G+G           
Sbjct: 17  YDVAVVGAGLAGTELAWRLARAGRDVLLVTQALDHLGNLY-QPTTQGVGFPPA------- 68

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L  +VA                A   P T  D   +   ++  + +   + ++Q  V 
Sbjct: 69  -SLFAQVA----------------AQLAPDT--DGWTFHRHLKAAVEATAGIHLLQSTVT 109

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             N + + ++ +   +   +R    VL  G FL+G + IG     AGR+ +   + L + 
Sbjct: 110 ELNEDSDEVT-LSTWEGPRLRARVAVLAVGAFLKGRLLIGDTLEEAGRLSEVAYDFLADD 168

Query: 186 FMKFDFDT 193
             +     
Sbjct: 169 LARAGVWL 176


>gi|167464947|ref|ZP_02330036.1| tRNA (uracil-5-)-methyltransferase Gid [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 140

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 25/142 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGG----LG 54
           V VIG G AG EAA   A  G    L   +               + C+ ++        
Sbjct: 9   VTVIGAGLAGSEAAWQIASSGVPVTLYEMRPVRKTPAHITDKFAELVCSNSLRANSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L +E+  +  L+   AD   +              G     DR+ +   +   + + 
Sbjct: 69  VGVLKQEMREMGSLIMSSADKHAV------------PAGGALAVDRDGFSGEITSTLHNH 116

Query: 115 ENLDVIQGEVAGFNTEKNIISS 136
             ++V   E+        +++S
Sbjct: 117 PLIEVRNEELQEIPDGITVVAS 138


>gi|254994343|ref|ZP_05276533.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes FSL
           J2-064]
          Length = 167

 Score = 86.9 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 25/141 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EAA    K G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G +  E+  LD ++   AD            K     G     DR  +   +  ++ + 
Sbjct: 65  VGVIKEEMRILDSIIIEAAD------------KASVPAGGALAVDRHEFSGYITDKVKNH 112

Query: 115 ENLDVIQGEVAGFNTEKNIIS 135
             + V   EV        II+
Sbjct: 113 PLVTVHTEEVTTIPEGPTIIA 133


>gi|148988381|ref|ZP_01819828.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926062|gb|EDK77136.1| tRNA (uracil-5-)-methyltransferase Gid [Streptococcus pneumoniae
           SP6-BS73]
          Length = 139

 Score = 86.9 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 26/139 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG 52
           +++SY + VIG G AG EAA   A+ G    L           HKT     + C+ ++ G
Sbjct: 1   MSQSY-INVIGAGLAGSEAAYQIAERGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSLRG 59

Query: 53  ----LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                  G L  E+  L  ++   A+A  +              G     DR+ +   + 
Sbjct: 60  DALTNAVGLLKEEMRRLGSVILESAEATRV------------PAGGALAVDRDGFSQMVT 107

Query: 109 REILSQENLDVIQGEVAGF 127
            ++++   ++V++ E+   
Sbjct: 108 EKVVNHPLIEVVRDEITRI 126


>gi|182416812|ref|ZP_02948202.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237669001|ref|ZP_04528985.1| glucose-inhibited division protein A [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182379274|gb|EDT76773.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium butyricum 5521]
 gi|237657349|gb|EEP54905.1| glucose-inhibited division protein A [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 425

 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 147/429 (34%), Gaps = 75/429 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VI++GGG +GC AA  A K GA   +I      +G  +    +   G+     E+ AL G
Sbjct: 3   VIIVGGGWSGCAAAISAKKAGADVTVIEKTDLLLGLGNVGGIMRNNGRYTASEELIALGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAV----RGPRTQADRELYRLAMQREILSQENLDVIQG 122
             + ++ D   +   V       A          +  + L  + +   + S+        
Sbjct: 63  GELIKMTDKISVHRNVDFPGHKHATLYNVNMIEGEVSKYLKDIGINLMMESR-------- 114

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V   N +   I  + + D S I     + TTGT               G MG+      
Sbjct: 115 -VNDVNFKDGKIKGVYLSDGSYIDGDVFIETTGT--------------TGPMGNCLRYGN 159

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             S           +     R        +  + +  D+ L   S  + K+    +   I
Sbjct: 160 GCSMCVLRCPAFGPRISISQR-----CGINDIQGERGDDILGAMS-GSCKLVKESLSDEI 213

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-----RNGHQIFLEP 297
            RT LET  +++       + + D+           +  +  F E       GH   +  
Sbjct: 214 -RTELETKGVVV-----LKVPAEDVNYGKLETKVCQQYALKEFAENIVLLDTGHAKLM-- 265

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKEL 351
                   YP      LP+      +R I GLE    + P YA      I Y  + P+  
Sbjct: 266 -----TTYYP------LPK------LRKIKGLENAKYVDP-YAGSKGNSIRYLSVAPR-- 305

Query: 352 FPTLETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV 410
              ++ + +  LF AG+ +G   G+ EA   G +AG N+ R    +  +    + + IG 
Sbjct: 306 TNDMKVEGVDNLFCAGEKSGLFVGHTEAICTGTLAGHNAVRLGMGMPLLILPSSIA-IGD 364

Query: 411 MIDDLTSKG 419
           +I     K 
Sbjct: 365 IIAYANEKA 373


>gi|15806684|ref|NP_295404.1| GidA-like protein [Deinococcus radiodurans R1]
 gi|6459450|gb|AAF11239.1|AE002010_2 GidA-related protein [Deinococcus radiodurans R1]
          Length = 259

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 28/188 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G G +G E A   A+ G    L++    ++G++   P + G             
Sbjct: 28  YDVAVVGAGVSGTELAWRLARAGQDVLLVSQALDSLGNLY-QPTVAGADFPP-------- 78

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             +  +VA                   G     D   +   ++ EI +   + ++Q  V 
Sbjct: 79  GSVFAQVA------------------AGMAPDVDGWTFHRLLKAEIEATSGIHLLQSCVT 120

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             + E+  +  +   +   +   TVVL  G+FL+G + IG     AGR+ +   + L + 
Sbjct: 121 ALDEEETQVV-LSTWEGPQLHARTVVLAVGSFLKGRLLIGDTMEDAGRLSEVAYDFLADD 179

Query: 186 FMKFDFDT 193
            +      
Sbjct: 180 LLLSGVWL 187


>gi|168210837|ref|ZP_02636462.1| putative FAD dependent oxidoreductase [Clostridium perfringens B
           str. ATCC 3626]
 gi|169343540|ref|ZP_02864539.1| putative FAD dependent oxidoreductase [Clostridium perfringens C
           str. JGS1495]
 gi|4240005|dbj|BAA74789.1| hypothetical 46.7-kDa protein~orf47 [Clostridium perfringens]
 gi|169298100|gb|EDS80190.1| putative FAD dependent oxidoreductase [Clostridium perfringens C
           str. JGS1495]
 gi|170711148|gb|EDT23330.1| putative FAD dependent oxidoreductase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 425

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 138/410 (33%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D    +    + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYKGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS  + K+    +   I 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS-GSCKLAKETLSEEIR 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           +   E   ++++  K    Y         +Y      + +V      GH   +       
Sbjct: 215 KELEEKGCVVLKIPKEDVNYDKLNTKVCQQYALKEFAENVVLL--DTGHAKLM------- 265

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
              YP             + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 266 TTYYP------------LEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K ++ LF AG+ +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 311 VKGVTNLFCAGEKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 360


>gi|46199836|ref|YP_005503.1| NAD(FAD)-utilizing enzyme [Thermus thermophilus HB27]
 gi|46197463|gb|AAS81876.1| NAD(FAD)-utilizing enzyme [Thermus thermophilus HB27]
          Length = 232

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 36/219 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y V+++G G +G EAA   A+ G    L+T     +      P         L R  D  
Sbjct: 4   YQVLIVGAGFSGAEAAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPK 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  +                                 +    +  +     L + Q    
Sbjct: 64  DERVW-------------------------------AFHARAKYLLEGLRPLHLFQATAT 92

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E N +  +   +    R   VVL  G+FL   + +G +   AGR+ ++    L+  
Sbjct: 93  GLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLYED 152

Query: 186 FMKFDFD-----TGRLKTGTPARLDGKTIIWDKTEKQFA 219
                F          +T +      + + +   E +  
Sbjct: 153 LEALGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEG 191


>gi|530429|emb|CAA83753.1| similar to NADH oxidase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 134

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   V +IG G AGCEAA   A       L   KT     +        L   +  R 
Sbjct: 1   MNKK--VKIIGAGLAGCEAAYFLANNDIQVELYEVKTLIKNEVQKTNNFAELVCSNTFRS 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVI 120
              L+      A+   +   V+ +     + G      DRE +   +   I +  N+ +I
Sbjct: 59  QSLLNAAGILKAEMRRLNSLVIKIADSCKIDGDDALAVDREDFSKKLTDVIKNHPNITII 118

Query: 121 QGEVAGFNTEK 131
           +  V+  + E 
Sbjct: 119 EQNVSYIDDEN 129


>gi|110799761|ref|YP_696483.1| putative FAD dependent oxidoreductase [Clostridium perfringens ATCC
           13124]
 gi|110674408|gb|ABG83395.1| putative FAD dependent oxidoreductase [Clostridium perfringens ATCC
           13124]
          Length = 425

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 139/410 (33%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+    +E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASQELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D    +    + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYKGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS  + K+    +   I 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS-GSCKLAKETLSEEIR 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           +   E   ++++  K    Y         +Y      + +V      GH   +       
Sbjct: 215 KELEEKGCVVLKIPKEDVNYDKLNTKVCQQYALKEFAENVVLL--DTGHAKLM------- 265

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
              YP             + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 266 TTYYP------------LEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K ++ LF AG+ +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 311 VKGVTNLFCAGEKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 360


>gi|182625713|ref|ZP_02953482.1| putative FAD dependent oxidoreductase [Clostridium perfringens D
           str. JGS1721]
 gi|177909115|gb|EDT71590.1| putative FAD dependent oxidoreductase [Clostridium perfringens D
           str. JGS1721]
          Length = 425

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 137/410 (33%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D         + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYTGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS  + K+    +   I 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS-GSCKLAKETLSEEIR 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           +   E   ++++  K    Y         +Y      + +V      GH   +       
Sbjct: 215 KELEEKGCVVLKIPKEDVNYDKLNTKVCQQYALKEFAENVVLL--DTGHAKLM------- 265

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
              YP             + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 266 TTYYP------------LEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K ++ LF AG+ +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 311 VKGVTNLFCAGEKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 360


>gi|169836120|ref|ZP_02869308.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [candidate division TM7 single-cell isolate TM7a]
          Length = 68

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 37/67 (55%)

Query: 18 CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77
           EAA  AA+ G   AL T     I  MSCNP++GG GK HLV E+  L G M R  D   
Sbjct: 1  MEAALAAARYGLKIALFTIYLDNIAMMSCNPSVGGPGKSHLVSELGMLGGEMARHIDNYN 60

Query: 78 IQFRVLN 84
          +Q + LN
Sbjct: 61 LQLKNLN 67


>gi|18310781|ref|NP_562715.1| putative FAD dependent oxidoreductase [Clostridium perfringens str.
           13]
 gi|168214374|ref|ZP_02639999.1| putative FAD dependent oxidoreductase [Clostridium perfringens CPE
           str. F4969]
 gi|18145462|dbj|BAB81505.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|170714113|gb|EDT26295.1| putative FAD dependent oxidoreductase [Clostridium perfringens CPE
           str. F4969]
          Length = 425

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 137/410 (33%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D         + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYNGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS  + K+    +   I 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS-GSCKLAKETLSEEIR 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           +   E   ++++  K    Y         +Y      + +V      GH   +       
Sbjct: 215 KELEEKGCVVLKIPKEDVNYDKLNTKVCQQYALKEFAENVVLL--DTGHAKLM------- 265

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
              YP             + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 266 TTYYP------------LEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K ++ LF AG+ +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 311 VKGVTNLFCAGEKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 360


>gi|110802644|ref|YP_699083.1| putative FAD dependent oxidoreductase [Clostridium perfringens
           SM101]
 gi|110683145|gb|ABG86515.1| putative FAD-dependent oxidoreductase [Clostridium perfringens
           SM101]
          Length = 425

 Score = 85.0 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 137/410 (33%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D         + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYTGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS  + K+    +   I 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS-GSCKLAKETLSEEIR 214

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNT 302
           +   E   ++++  K    Y         +Y      + +V      GH   +       
Sbjct: 215 KELEEKGCVVLKIPKEDVNYDKLNTKVCQQYALKEFAENVVLL--DTGHAKLM------- 265

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
              YP             + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 266 TTYYP------------LEKLRRIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K +S LF AG+ +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 311 VKGVSNLFCAGEKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 360


>gi|260654468|ref|ZP_05859958.1| pyridine nucleotide-disulphide oxidoreductase [Jonquetella anthropi
           E3_33 E1]
 gi|260630745|gb|EEX48939.1| pyridine nucleotide-disulphide oxidoreductase [Jonquetella anthropi
           E3_33 E1]
          Length = 537

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 173/524 (33%), Gaps = 84/524 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-- 61
            S+DVIVIGGG AG  AA  AA++GAS  L          +     + G G+ +   +  
Sbjct: 2   NSFDVIVIGGGPAGMMAALRAAQMGASVLL----LEKNDELGRKLGLTGRGRCNFAHDEP 57

Query: 62  ---IDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR--ELYRL---------- 105
              + A   G      + A  +F +       A  G R   +R   LY            
Sbjct: 58  DAAVLAQGYGKGAAFMEQALREFGLNETVAFFASCGVRAVRERGKRLYPQMGQDSSAVTA 117

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           A++RE+ ++  L +   EV G +     I  ++ +   +   + V+ T G         G
Sbjct: 118 ALRRELHARRVLVLSSTEVKGLDASGGKIRRVITRQGEIDGRAFVLATGGQSFPATGSTG 177

Query: 166 KLKIPAGRM---GDSPSNSLF--NSFMKFDFDTGRLKTGT---PARLDGKTIIWDKTEKQ 217
                A R+    + P  ++       KF  +   LK         L+G+ +      ++
Sbjct: 178 DGYRWAKRVGCTIEEPRPAICPVKCREKFCAELNGLKLKNVRLTLFLNGEPVD-----ER 232

Query: 218 FADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
           F +    PF        +                ++ +      I          R+   
Sbjct: 233 FGEMDFAPFGVTGATAMDMA---------ARIGELLPQGKLRLRIDLKPALDRD-RFIAR 282

Query: 278 IEDKIVRFGERNGHQIFLE--PEGLNTDVVYPNGIS-----TALPEEIQHQFIRTIP--- 327
           ++ +    G+        +  P+ +   V+   G+       +L  E +   +  +    
Sbjct: 283 LDREFPAEGDLPLRFALRKMLPKEIIPVVIRLAGLQEGDPAGSLTPENKAALVDAMKEFS 342

Query: 328 -------GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI---NGTTGYEE 377
                  G     + R G +++   +NPK    T+   K+  LF AG++   +G TG   
Sbjct: 343 VTPTELAGFRWAIVTRGGVSLDD--VNPK----TMACTKVPNLFFAGELLDVDGPTGGYN 396

Query: 378 AAAQ---GLVAGINSA-RKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE-PYRMFTSRAE 432
             A    G +AG ++A             + +S               + P R F  RAE
Sbjct: 397 LQACWTTGWLAGQSAAELLGYHRPAPAAQKAESAARQWRGHAVLHPKDKAPTRHFPPRAE 456

Query: 433 YRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
                          P G    C  E+   +  K  + ++  RS
Sbjct: 457 GPKKAA--------GPEGRSARCSSEKPAPQEEKRPKRFDRPRS 492


>gi|168215428|ref|ZP_02641053.1| putative FAD dependent oxidoreductase [Clostridium perfringens NCTC
           8239]
 gi|182382357|gb|EDT79836.1| putative FAD dependent oxidoreductase [Clostridium perfringens NCTC
           8239]
          Length = 425

 Score = 84.6 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 140/410 (34%), Gaps = 64/410 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+ G
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                 E N I  +   D    +    + TTG+               G MG+       
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYKGDVFIETTGS--------------TGPMGNCLRYGNG 160

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
            S       +   +    +R   + I      ++  DE L  FS            C + 
Sbjct: 161 CSMCILRCPSFGPRISISSRCGVEDIQ----GERVGDE-LGAFS----------GSCKLA 205

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
           +  L     I + +         I    P+   + +    +  ++   + F E      +
Sbjct: 206 KETL--SEEIRKELDEKGCVVLKI----PKEDVNYDKLNTKVCQQYALKEFAE------N 253

Query: 304 VVYPN-GISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLE 356
           VV  + G +  +      + +R I GLE    + P YA      I Y  + P+     ++
Sbjct: 254 VVLLDTGHAKLMTTYYPLEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMK 310

Query: 357 TKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            K ++ LF AG+ +G   G+ EA   G +AG NS R +  +  +   R  
Sbjct: 311 VKGVTNLFCAGEKSGLFVGHTEAIVTGTLAGHNSVRHALGIPYLILPRAT 360


>gi|147774864|emb|CAN62514.1| hypothetical protein VITISV_035600 [Vitis vinifera]
          Length = 76

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          N  YDVIV+GGGHAGCEAA  +A+LGA T L+T     I    C   +  
Sbjct: 28 NERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAW-QCTGGLSN 76


>gi|150016754|ref|YP_001309008.1| glucose-inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903219|gb|ABR34052.1| glucose-inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
          Length = 425

 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 145/425 (34%), Gaps = 67/425 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VI++GGG +GC AA  + K GA   +I      +G  +    +   G+     E+ AL G
Sbjct: 3   VIIVGGGWSGCAAAISSKKAGADVTIIEKTDLLLGLGNVGGIMRNNGRYTAAEELIALGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ--ENLDV---IQ 121
             + ++ D       +       A           LY + +   ++S+  ++LD+   ++
Sbjct: 63  GDLIKITDEISTHKNIDFPGHKHAT----------LYNVNLIEGVVSKYLKSLDINLMME 112

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V   N +   I    + D + I     + TTGT               G MG+     
Sbjct: 113 SRVNDINFDGQKIKGAYLSDGTYIEGDVFIETTGT--------------TGPMGNCLRYG 158

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
              S           +     R           + +  D+ L  FS            C 
Sbjct: 159 NGCSMCVLRCPAFGPRISISER-----CGVSDIQGERGDDILGAFS----------GSCK 203

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           + + +L     I   +    +    +      Y         ++  +   +  +  +  +
Sbjct: 204 LAKESL--SDEIRNELDSKGVVVLKVPKEDINYDKLSTKVCQQYALKEFAENIILLDTGH 261

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTL 355
             +     ++T  P       +R I GLE    + P YA      I Y  + P+     L
Sbjct: 262 AKL-----MTTYYPLYK----LRKIKGLENAKYVDP-YAGSKGNSIRYLSVAPR--TNDL 309

Query: 356 ETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           +   +  LF AG+ +G   G+ EA   G +AG N+ R +  +  +    + + IG MI  
Sbjct: 310 KVIGVDNLFCAGEKSGLFVGHTEAMCTGALAGHNAVRLAMGMPLLILPSSIA-IGDMITY 368

Query: 415 LTSKG 419
              K 
Sbjct: 369 ANEKA 373


>gi|325571278|ref|ZP_08146778.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155754|gb|EGC67950.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 420

 Score = 83.5 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 155/438 (35%), Gaps = 75/438 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIV+G G +G  AA  AAK GA   LI         +     + G G+ ++   
Sbjct: 1   MEKTYDVIVVGAGTSGMMAAITAAKQGARVLLIEKNK----KIGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----------- 104
              +D L+      G+   +   QF   +V    A  G   + +                
Sbjct: 57  -RPVDDLVAHIPGNGKFLYSTFSQFNNYDVMAFFADLGVVLKEEDHGRMFPVTNKSKTIV 115

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGT 156
            A+ + I       +    V     + + I  +  +        +V+LT        TG 
Sbjct: 116 EALLQAINDHHVTLLTNTVVTKLIHDGSQIRGVRTET-DEFSAPSVILTTGGRTYPSTGA 174

Query: 157 FLRGVIHIGKLKIPAGRMG--DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII---- 210
              G     K+      +   +SP  S  +   +       L+  T + LD K       
Sbjct: 175 TGDGYKMAKKVGHTITPLYPTESPLVSEESFIQERTLQGISLQGITLSVLDQKGKPIVAH 234

Query: 211 -WDKTEKQFADERL---IPFSFMTDKITNRQ-----IECGITRTNLETHRIIMENIKHSA 261
             D     F           SF+  ++  +Q     ++C  T++     + ++++     
Sbjct: 235 TMDLLFTHFGLSGPAALRCSSFVNQELKKQQPVTVVLDCLPTKSQEALTQELIQSAASKK 294

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE---PEGLNTDVVYPNGISTALPEEI 318
                +  + P    +         + + H++  E   PE L        G S       
Sbjct: 295 QLPNALAGFLPERLMTFF-----LQQLDLHELVAEKASPEQLTALAFLIKGFSIT----- 344

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG- 374
               +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG 
Sbjct: 345 ---IVRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGG 394

Query: 375 --YEEAAAQGLVAGINSA 390
                A   G V+G N+A
Sbjct: 395 FNITAAFCTGHVSGKNAA 412


>gi|307265444|ref|ZP_07547000.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919558|gb|EFN49776.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 52

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 34/46 (73%)

Query: 577 SNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNE 622
           SNE KEKL+ ++P ++ QAS+I G++PA +++LLIY+++      +
Sbjct: 2   SNEAKEKLTKIRPTSIGQASRISGVSPADISVLLIYMQQLRRNKED 47


>gi|254518753|ref|ZP_05130809.1| glucose-inhibited division protein A [Clostridium sp. 7_2_43FAA]
 gi|226912502|gb|EEH97703.1| glucose-inhibited division protein A [Clostridium sp. 7_2_43FAA]
          Length = 426

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 138/421 (32%), Gaps = 61/421 (14%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD-G 67
           I++GGG +GC AA  A K GA   L       +G  +    +   G+     E+  L  G
Sbjct: 5   IIVGGGWSGCAAAITAKKAGAEVHLYEKTDLLLGLGNVGGIMRNNGRWTASEELIELGAG 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGEVAG 126
            +  + D       +             T  D  L    + + +     N+ + +  V  
Sbjct: 65  DLIDIVDDTARHKDI-----EFPGHKHATLYDVNLIEGKVSKYLEEMGINIHI-ESRVTD 118

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E + I  I + D +       + TTGT               G MG+        S 
Sbjct: 119 VKLEGSKIKGIYLSDGTYEEGDVFIETTGT--------------TGPMGNCLRYGNGCSM 164

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                     +     R     I  ++ E          FS  + K+    +   I +  
Sbjct: 165 CVLRCPAFGPRISISERCGVADIQGERDEDTLG-----AFS-GSCKLAKESLSKEIIKQL 218

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
            ET  +I+E  K    Y         +Y      + I+      GH   +          
Sbjct: 219 DETGCVILEVPKEDVNYDKLNAKVCQQYALKEFAENIILL--DTGHAKLM-------TTY 269

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKK 359
           YP             + +R I GLE    + P YA      I Y  + P+     L+ K 
Sbjct: 270 YP------------LKKLRKIEGLENAKYVDP-YAGSKGNSIRYLSVAPR--TNDLKVKG 314

Query: 360 ISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +  LF AG+ +G   G+ EA   G +AG N+ R +  +  +    + + IG +I     K
Sbjct: 315 VDNLFCAGEKSGLFVGHTEAICTGSLAGHNAVRLAMGIPLLILPGSIA-IGDIISYANEK 373

Query: 419 G 419
            
Sbjct: 374 A 374


>gi|291286091|ref|YP_003502907.1| HI0933 family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883251|gb|ADD66951.1| HI0933 family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 416

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGG AG  AA  A + GAS  L       +GS+     I G G+ +L   I 
Sbjct: 2   KIYDVIVIGGGPAGMMAAGTAGENGASVLL----LEKMGSLGRKLLISGSGRCNLTNTIT 57

Query: 64  ALD------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----------RLAM 107
                    G  GR    A   F   +       RG  T  +++             L++
Sbjct: 58  VTKDFVEHFGKKGRFLYPALNGFSTTDTISFFNGRGLVTTVEKDFKIFPESETAAEVLSV 117

Query: 108 QREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               + +  +D+ QG  +   +T  NII+S+ +  N +I C ++++TTG
Sbjct: 118 LTRYMKENRVDIRQGVIIKNIHTADNIITSVELAGNEVITCKSLIITTG 166


>gi|55981866|ref|YP_145163.1| GidA-like protein [Thermus thermophilus HB8]
 gi|88192680|pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
           Thermophilus Hb8
 gi|55773279|dbj|BAD71720.1| GidA-related protein [Thermus thermophilus HB8]
          Length = 232

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 31/187 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y V+++G G +G E A   A+ G    L+T     +      P         L R  D  
Sbjct: 4   YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPK 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  +                                 +    +  +     L + Q    
Sbjct: 64  DERVW-------------------------------AFHARAKYLLEGLRPLHLFQATAT 92

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   E N +  +   +    R   VVL  G+FL   + +G +   AGR+ ++    L   
Sbjct: 93  GLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLED 152

Query: 186 FMKFDFD 192
             +  F 
Sbjct: 153 LSRLGFR 159


>gi|207108622|ref|ZP_03242784.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 61

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPA--ALNLLLIYIKKN 616
             K  IPK F +  +P LS E  EKL   +P +L +AS+I G+TPA   +  L I+++KN
Sbjct: 1   MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKN 60

Query: 617 T 617
           +
Sbjct: 61  S 61


>gi|296133133|ref|YP_003640380.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola sp. JR]
 gi|296031711|gb|ADG82479.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola potens JR]
          Length = 424

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 146/404 (36%), Gaps = 58/404 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-D 66
           V+VIGGG AGC AA  A K GA  ALI      +G+      +   G+     E   L  
Sbjct: 3   VVVIGGGWAGCSAAYFAKKAGAEVALIERTDLLLGTGLVGGIMRNNGRLAAAEEARVLAG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVA 125
               R+ D+      V       A     T+ +R     A++  +  Q  + + ++  ++
Sbjct: 63  DDFSRIIDSVTRHRNVNFPGHRHADLYDVTRIER-----AVKNALE-QSGVQIYLKTLIS 116

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               +   I S+  Q  +       + TTGT              AG M +        +
Sbjct: 117 SVLVQGTRIFSVSDQGGNEFPGDAFIDTTGT--------------AGPMKNCIKYGTGCA 162

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
                  T   +    A+   K       E Q  D  L  F  ++         C + + 
Sbjct: 163 MCILRCPTFGPRISVTAKAGIK-------EIQAGD-GLSQFEAISG-------SCKLAKE 207

Query: 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
           +L+   +   N K   I         P      +  I+R   +   Q +   E   T+++
Sbjct: 208 SLDKTIVQELNKKGVVII--------PLPEQYHKHDILR---KKACQQYA-LEEYATNLI 255

Query: 306 YPN-GISTALPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKK 359
             + G +  +      + +R+I G  +     P     G ++ +  + P +  P+L+ + 
Sbjct: 256 LLDTGHAKLMTPFFPLESLRSIDGFHEAKYADPYSGGQGNSVRFMAMAPCQ--PSLQVEG 313

Query: 360 ISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICFS 402
           +  LF AG+  G   G+ EA   G++AG N+ RK+  +  I   
Sbjct: 314 LENLFCAGEKIGPVVGHTEAIITGMLAGHNAVRKAKNMPLIVLP 357


>gi|257877672|ref|ZP_05657325.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811838|gb|EEV40658.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 420

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 155/438 (35%), Gaps = 75/438 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIV+G G +G  AA  AAK GA   LI         +     + G G+ ++   
Sbjct: 1   MEKTYDVIVVGAGTSGMMAAITAAKQGARVLLIEKNK----KIGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----------- 104
              +D L+      G+   +   QF   +V    A  G   + +                
Sbjct: 57  -RPVDDLVAHIPGNGKFLYSTFSQFNNYDVMAFFADLGVVLKEEDHGRMFPVTNKSKTIV 115

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGT 156
            A+ + I       +    V     + + I  +  +        +V+LT        TG 
Sbjct: 116 EALLQAINDHHVTLLTNTVVTKLIHDGSQIRGVRTET-DEFSAPSVILTTGGRTYPSTGA 174

Query: 157 FLRGVIHIGKLKIPAGRMG--DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII---- 210
              G     K+      +   +SP  S  +   +       L+  T + LD K       
Sbjct: 175 TGDGYKMAKKVGHTITPLYPTESPLVSEDSFIQERTLQGISLQDITLSVLDQKGKPIVAH 234

Query: 211 -WDKTEKQFADERL---IPFSFMTDKITNRQ-----IECGITRTNLETHRIIMENIKHSA 261
             D     F           SF+  ++  +Q     ++C   +++    + ++++     
Sbjct: 235 TMDLLFTHFGLSGPAALRCSSFVNQELKKQQPVTVVLDCLPAKSHEALTQELIQSAASKK 294

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE---PEGLNTDVVYPNGISTALPEEI 318
                +  + P    +         + + H++  E   PE L        G S       
Sbjct: 295 QLPNALAGFLPERLMTFF-----LQQLDLHELVAEKASPEQLAALASLIKGFSVT----- 344

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG- 374
               +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG 
Sbjct: 345 ---IVRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGG 394

Query: 375 --YEEAAAQGLVAGINSA 390
                A   G V+G N+A
Sbjct: 395 FNITAAFCTGHVSGKNAA 412


>gi|213422911|ref|ZP_03355937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 47

 Score = 81.5 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           YCPSIEDK++RF +RN HQIFLEPEGL ++ +YPNGIST+LP ++Q 
Sbjct: 1   YCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQM 47


>gi|147776804|emb|CAN63559.1| hypothetical protein VITISV_033294 [Vitis vinifera]
          Length = 445

 Score = 81.1 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 31/128 (24%)

Query: 495 FKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAK 554
            ++   + T    L  P    + L          S +  E + I+  Y  +  RQ  +  
Sbjct: 317 IREIVDSSTLESILKKPHVQYKVLDKHGFGNELLSKIEKECVNIDIKYEGFIMRQQSQ-- 374

Query: 555 EIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIK 614
                                        L  ++P  + QAS++ G++PA +  LL  ++
Sbjct: 375 -----------------------------LQQIRPQTIGQASRVGGVSPADITALLFILE 405

Query: 615 KNTVKLNE 622
               K  E
Sbjct: 406 TKRRKAQE 413


>gi|257867585|ref|ZP_05647238.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873914|ref|ZP_05653567.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801641|gb|EEV30571.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808078|gb|EEV36900.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 420

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 154/438 (35%), Gaps = 75/438 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIV+G G +G  AA  AAK GA   LI         +     + G G+ ++   
Sbjct: 1   MEKTYDVIVVGAGTSGMMAAITAAKQGARVLLIEKNK----KIGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----------- 104
              +D L+      G+   +   QF   +V    A  G   + +                
Sbjct: 57  -RPVDDLVAHIPGNGKFLYSTFSQFNNYDVMAFFADLGVVLKEEDHGRMFPVTNKSKTIV 115

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGT 156
            A+ + I       +    V     + + I  +  +        +V+LT        TG 
Sbjct: 116 EALLQAINDHHVTLLTNTVVTKLIHDGSQIRGVRTET-DEFSAPSVILTTGGRTYPSTGA 174

Query: 157 FLRGVIHIGKLKIPAGRMG--DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII---- 210
              G     K+      +   +SP  S  +   +       L   T + LD K       
Sbjct: 175 TGDGYKMAKKVGHTITPLYPTESPLVSEDSFIQERTLQGISLHDITLSVLDQKGKPIVAH 234

Query: 211 -WDKTEKQFADERL---IPFSFMTDKITNRQ-----IECGITRTNLETHRIIMENIKHSA 261
             D     F           SF+  ++  +Q     ++C   +++    + ++++     
Sbjct: 235 TMDLLFTHFGLSGPAALRCSSFVNQELKKQQPVTVVLDCLPAKSHEALTQELIQSAASKK 294

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE---PEGLNTDVVYPNGISTALPEEI 318
                +  + P    +         + + H++  E   PE L        G S       
Sbjct: 295 QLPNALAGFLPERLMTFF-----LQQLDLHELVAEKASPEQLAALASLIKGFSVT----- 344

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG- 374
               +RT P LEK  +   G  +    INPK    T+E+KKI+GL+ AG+   ING TG 
Sbjct: 345 ---IVRTFP-LEKSFVT--GGGVHLKEINPK----TMESKKINGLYFAGELLDINGYTGG 394

Query: 375 --YEEAAAQGLVAGINSA 390
                A   G V+G N+A
Sbjct: 395 FNITAAFCTGHVSGKNAA 412


>gi|238603528|ref|XP_002395973.1| hypothetical protein MPER_03877 [Moniliophthora perniciosa FA553]
 gi|215467627|gb|EEB96903.1| hypothetical protein MPER_03877 [Moniliophthora perniciosa FA553]
          Length = 95

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 43/74 (58%)

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
           I     K PAGR+ ++PS  L  S     F  GRL+TGTPARLDGKTI +    KQ  D+
Sbjct: 6   IDSSMKKFPAGRINEAPSIGLSASLQAAGFKLGRLQTGTPARLDGKTINFTNLTKQVGDK 65

Query: 222 RLIPFSFMTDKITN 235
             IPFSF+  + + 
Sbjct: 66  EPIPFSFLNRQPSE 79


>gi|224093480|ref|XP_002309926.1| predicted protein [Populus trichocarpa]
 gi|222852829|gb|EEE90376.1| predicted protein [Populus trichocarpa]
          Length = 158

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 24/114 (21%)

Query: 498 DGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557
            G T   +     P    +    +     + S    E ++I+                  
Sbjct: 50  SGGTLQHWSLQKKPRVQYEVFDKLGFGNGQLSRKE-ECVEIDV----------------- 91

Query: 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLI 611
               R +P D DY ++  LS E  EKLS   P  + QAS+  G++PA + +LLI
Sbjct: 92  ----RPLPGDLDYYAMTTLSLEALEKLSK--PQTIGQASRECGVSPADITVLLI 139


>gi|297564747|ref|YP_003683719.1| glucose-inhibited division protein A [Meiothermus silvanus DSM
           9946]
 gi|296849196|gb|ADH62211.1| glucose-inhibited division protein A [Meiothermus silvanus DSM
           9946]
          Length = 246

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 32/177 (18%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G    L T    T+  +   P +    +G L+ E+         +   A         
Sbjct: 40  RRGVRVGLCTQSLDTV-FLPFTPVMPPFPEGTLLAEVGFAGAKGWEIHARA--------- 89

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
                                 + ++ ++ NL + Q        E   +  +   +    
Sbjct: 90  ----------------------KYKLEAEPNLHLFQSSATRLLLEGGRVGGVETWEGPQR 127

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           R   VVL  G+F+   + IGK+   AGR+ ++    L+   +   F     K   P 
Sbjct: 128 RAGRVVLAVGSFIDPKLAIGKVVEAAGRLSEAAYPDLYQDLLAHGFRFVERKAEVPP 184


>gi|66576098|gb|AAY51656.1| mitochondrial MTO1 [Colobus guereza]
          Length = 51

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           ++Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   DLQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|225182047|ref|ZP_03735478.1| glucose-inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
 gi|225167260|gb|EEG76080.1| glucose-inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
          Length = 435

 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 79/437 (18%), Positives = 149/437 (34%), Gaps = 85/437 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           V+++GGG +GC AA  A K G    L+      +G+      +   G+     E  A+  
Sbjct: 4   VVIVGGGWSGCAAAVAARKSGCQVVLLERTDMLLGTGLVGGIMRNNGRFTATEEAIAMGF 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-----IQ 121
           G + ++ D      R  N++               LY +     I+ +  LD+      +
Sbjct: 64  GDIFKLVD---DNCRHTNIEFPGHKHS-------SLYDVGTIEPIIKKYLLDLGVEIHFE 113

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT---------FLRGVIHIGKLK-IPA 171
             +   + ++N I  +++ D++  R    + TTGT         F  G            
Sbjct: 114 SRIVDVDMKENSIKKVIIDDDTFFRGDVFIDTTGTAGGMANCKKFGNGCAMCVLRCPTYG 173

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
           GR+  +    +           G    GT   + G                         
Sbjct: 174 GRISITAKTGVTEI-------IGVKDDGTVGAMSGSC----------------------- 203

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH 291
           K+    +   I     +   +++           D K  G + C        ++  +   
Sbjct: 204 KLFKESLAPHIVEELDKNGVVVV----PIPKEQIDTKKLGKKACQ-------QYALKEYA 252

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYI 346
           +  +  +  +  ++ P             + +R++PG+E      P     G ++ Y  +
Sbjct: 253 ENVILLDTGHAKLMAP---------FYPIENLRSLPGMENARFEDPYSGGKGNSMRYLGM 303

Query: 347 NPKELFPTLETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
            P+     L+ + +  LF AG+  G   G+ EA   G +AG N+AR    LD +    T 
Sbjct: 304 APR--NDALQVEGVDNLFCAGEKAGLLVGHTEAIVTGSLAGFNAARVCLGLDPVILPDT- 360

Query: 406 SYIGVMIDDLTSKGVLE 422
           + IG  I  + S+   E
Sbjct: 361 TVIGDAISFVRSEMETE 377


>gi|320335441|ref|YP_004172152.1| glucose-inhibited division protein A [Deinococcus maricopensis DSM
           21211]
 gi|319756730|gb|ADV68487.1| glucose-inhibited division protein A [Deinococcus maricopensis DSM
           21211]
          Length = 252

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 23/190 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+G G AG E     A+ GA   L++     +G++        L     V    A 
Sbjct: 17  YDVAVVGAGLAGTELTWRLARAGADVLLVSQALDHLGNLYQPTVDAALFPPESVFAQVA- 75

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                          R L      A        D   +   ++ E+ +   + ++Q  V 
Sbjct: 76  ---------------RRL------APDADGAPLDGWHFHRVLKAELEATSGIHLLQSCVR 114

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G        + +   +   +   T+VL  G+FLR  + +G  +  AGR+ +   + L + 
Sbjct: 115 GVTCTDAGFT-LATWEGPSLHARTLVLAAGSFLRARLRLGAFEEEAGRLSEVAYDFLADD 173

Query: 186 FMKFDFDTGR 195
                     
Sbjct: 174 LTAQGVPLAE 183


>gi|207111593|ref|ZP_03245755.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 43

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAG 386
           D+I P EL  TLETKKI GL+LAGQINGTTGYEEAAAQGL+AG
Sbjct: 1   DFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAG 43


>gi|66576108|gb|AAY51661.1| mitochondrial MTO1 [Lemur catta]
          Length = 51

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKMIHPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|66576088|gb|AAY51651.1| mitochondrial MTO1 [Macaca nemestrina]
 gi|66576090|gb|AAY51652.1| mitochondrial MTO1 [Macaca sylvanus]
 gi|66576094|gb|AAY51654.1| mitochondrial MTO1 [Macaca mulatta]
 gi|66576102|gb|AAY51658.1| mitochondrial MTO1 [Callithrix jacchus]
 gi|66576104|gb|AAY51659.1| mitochondrial MTO1 [Saguinus fuscicollis]
          Length = 51

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAG 51


>gi|66576092|gb|AAY51653.1| mitochondrial MTO1 [Macaca fascicularis]
          Length = 51

 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF AG
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHMVQRLFFAG 51


>gi|169837932|ref|ZP_02871120.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 99

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
              VVL TGTFLRG+++IG  ++  GRMG+  ++ L +S        GR KTGTP RLD 
Sbjct: 1   SKAVVLATGTFLRGLLYIGDKRVKGGRMGELSADDLTSSLKSLGLKMGRFKTGTPPRLDI 60

Query: 207 KTIIWDKTEKQFADER-LIPFSFMTDKITNRQIECGI 242
           +T+  +K E+Q       + FS  T      +    +
Sbjct: 61  RTLNLEKLEEQPGITGVPLKFSMRTPNSEILENPNYL 97


>gi|151399991|gb|ABS11108.1| GidA [Vibrio cholerae]
 gi|151399994|gb|ABS11110.1| GidA [Vibrio cholerae]
 gi|151399996|gb|ABS11111.1| GidA [Vibrio cholerae]
 gi|151399999|gb|ABS11113.1| GidA [Vibrio cholerae]
 gi|151400002|gb|ABS11115.1| GidA [Vibrio cholerae]
 gi|151400005|gb|ABS11117.1| GidA [Vibrio cholerae]
 gi|151400008|gb|ABS11119.1| GidA [Vibrio mimicus]
          Length = 54

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 40/53 (75%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + ++DVIV+GGGHAG EAA  AA+ G  T L+TH   T+G MSCNPAIGG+
Sbjct: 2  LYHETFDVIVVGGGHAGTEAALAAARTGQRTLLLTHNIDTLGQMSCNPAIGGI 54


>gi|303325503|ref|ZP_07355946.1| gid protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863419|gb|EFL86350.1| gid protein [Desulfovibrio sp. 3_1_syn3]
          Length = 111

 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + V+GGG AGCE A   A+ G    L   K         N  +  L   + +R  +A  G
Sbjct: 6   IAVVGGGLAGCECALRLARAGLDVTLFEQKPGFRSPAHVNDCLAELVCSNSLRSDEATSG 65

Query: 68  ---LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
              L   +         V +  + PA  G     DRE +  AM   +
Sbjct: 66  VGLLKAEMRALDSDFMAVADACRVPA--GKALAVDREAFAQAMTARV 110


>gi|169841667|ref|ZP_02874780.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 61

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
             E+++I + Y  +  R+  + ++ K  EK +IP+DFDY S+  LSN     L   KP  
Sbjct: 2   AKEQVEINAKYNVFIEREKAQIEKFKKLEKMVIPEDFDYESVKGLSNIAISGLVYGKPET 61


>gi|328462233|gb|EGF34349.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 81

 Score = 77.7 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            I+  A        +GP     +ED   + G+     + L  +     +    G  T L 
Sbjct: 2   PIEVMAKRGIKTMLFGPLKPVGLEDP--KTGKTPYAVVQLRQDNAAASLYNIVGFQTHLK 59

Query: 316 EEIQHQFIRTIPGLEKVNIIRP 337
              Q +  R IPGLE   I+R 
Sbjct: 60  WGEQKRVFRMIPGLEHAQIVRY 81


>gi|66576110|gb|AAY51662.1| mitochondrial MTO1 [Eulemur coronatus]
          Length = 51

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I PGY ++YDY++P+++ P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIHPGYGVQYDYLDPRQIAPSLETHLVQRLFLAG 51


>gi|322806659|emb|CBZ04228.1| fragment flavodoxin oxidoreductase [Clostridium botulinum H04402
           065]
          Length = 425

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 144/420 (34%), Gaps = 59/420 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           V+VIGGG AGC AA  A K GA  ++       +G  +    +   G+     E+ AL  
Sbjct: 3   VVVIGGGWAGCSAAISAKKAGADVSIFEKTDLLLGLGNVGGIMRNNGRFTAAEELIALGA 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G +  + D       +       A      + +  +        I     + +I   V  
Sbjct: 63  GDLINITDENSRHKNIDFPGHKHAWLYDVNKIEPAVKNHMKNMGID----IHLISRIV-D 117

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E + I  I + D + +     + TTG+               G MG+        S 
Sbjct: 118 VKKEGDKIKGIYISDGTYVDGDVFIETTGS--------------TGPMGNCLRYGNGCSM 163

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                     +    +R        D  + +  D+ L  FS  + K+    +   + +  
Sbjct: 164 CVLRCPAFGPRVSLTSR-----AGVDDFQGEREDDLLGAFS-GSCKLAKETMSDELVKEL 217

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRY-CPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
            ET  ++++  K              +Y      + IV      GH   +          
Sbjct: 218 DETGVLVLKVPKEDINLDKLKMKVCQQYALKEFAENIVIL--DTGHAKLM-------TSY 268

Query: 306 YPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKK 359
           YP             + +R + GLEKV  I P YA      I Y  + P+     ++ K 
Sbjct: 269 YP------------LEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKG 313

Query: 360 ISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           +  LF+ G+ +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 314 LENLFVGGEKSGLFVGHTEAITTGSLAGHNAVRYCLGMPMLILPRSMA-LGDLIAYANHK 372


>gi|66576112|gb|AAY51663.1| mitochondrial MTO1 [Nycticebus coucang]
          Length = 51

 Score = 74.6 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+ + P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRHITPSLETHLVQRLFLAG 51


>gi|297520906|ref|ZP_06939292.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Escherichia coli OP50]
          Length = 53

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G MSCNPAIGG
Sbjct: 7  FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGLMSCNPAIGG 53


>gi|66576114|gb|AAY51664.1| mitochondrial MTO1 [Galago moholi]
          Length = 51

 Score = 74.2 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
           E+Q + I  I GLEK  +I+PGY ++YDY++P+ + P+LET  +  LFLAG
Sbjct: 1   ELQEKMITCIRGLEKAKMIQPGYGVQYDYLDPRHISPSLETHLVQRLFLAG 51


>gi|66576106|gb|AAY51660.1| mitochondrial MTO1 [Lagothrix lagotricha]
          Length = 51

 Score = 74.2 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
           E+Q + I  I GLEK  +I+PGY ++YDY++P+++ P+LET  +  LF  
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFC 50


>gi|315037061|gb|EFT48993.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Enterococcus faecalis TX0027]
          Length = 119

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
           V +IG G AG EAA   A  G    L           H+T     + C+ ++ G      
Sbjct: 5   VTIIGAGLAGSEAAWQVANAGVPVDLYEMRPVKKTPAHQTENFAELVCSNSLRGNSLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            G L  E+  L+ ++   AD   +              G     DR+ +   +  +I  
Sbjct: 65  VGVLKEEMRRLNSIIIGSADQTAV------------PAGGALAVDRDSFSETITEKIKK 111


>gi|332866929|ref|ZP_08437270.1| hypothetical protein HMPREF0020_00881 [Acinetobacter baumannii
          6013113]
 gi|332734352|gb|EGJ65478.1| hypothetical protein HMPREF0020_00881 [Acinetobacter baumannii
          6013113]
          Length = 49

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          + YDVIVIGGGHAG EAA  AA++G  T L+TH   T+G MSCNP
Sbjct: 5  KVYDVIVIGGGHAGTEAALAAARMGRQTLLLTHNIETLGQMSCNP 49


>gi|255030832|ref|ZP_05302783.1| tRNA (uracil-5-)-methyltransferase Gid [Listeria monocytogenes
           LO28]
          Length = 103

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 25/110 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLG---- 54
           V VIG G AG EA       G    L           H T     + C  ++   G    
Sbjct: 5   VNVIGAGLAGSEAVWQLVNRGVKVDLYEMRPVKQTPAHHTDKFAELVCTNSLRANGLTNA 64

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
            G +  E+  LD ++   AD            K     G     DR  + 
Sbjct: 65  VGVIKEEMRMLDSIIIEAAD------------KASVPAGGALAVDRHEFS 102


>gi|332976748|gb|EGK13579.1| glucose-inhibited division protein [Desmospora sp. 8437]
          Length = 104

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
          V VIG G AG EAA   A+ G S  L+          H T     + C+ ++        
Sbjct: 5  VTVIGAGLAGSEAAWQLARRGVSVRLVEMRPVKQTPAHHTGQFAELVCSNSLRSNELTNA 64

Query: 55 KGHLVREIDALDGLMGRVADAAGI 78
           G L  E+  LD L+   ADA  +
Sbjct: 65 VGILKEEMRQLDSLIIGCADAHAV 88


>gi|169842216|ref|ZP_02875321.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 47

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
           +Y+G I S GPRYCPSIEDK+V+F +++ H +FLEPEG  T  VY 
Sbjct: 1   MYNGSISSTGPRYCPSIEDKVVKFNDKDSHHLFLEPEGFETAEVYI 46


>gi|168334799|ref|ZP_02692925.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 584

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 24/166 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN+ +DV V+GGG +G  AA  AA+ G S AL          +   P +GG     +  
Sbjct: 1   MINKKFDVAVVGGGLSGICAAIAAARGGVSVAL----------IQDRPVLGGNASSEIRM 50

Query: 61  EIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQADRE-LYRLAMQREILSQENLD 118
            I       GR  D   G    +L   K       R Q +   ++ + +  ++  + N+ 
Sbjct: 51  HICGASRGGGRKNDRETGXIEEILLEHK------KRNQFNSYAIFDMILWEKVTQEPNIT 104

Query: 119 VI-QGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFL 158
           +     V     +   ISS++      + +  I     V  TG  +
Sbjct: 105 LFLNTHVKAITIDNWSISSVIAFQLTTEKSINIAAKIFVDATGDAM 150


>gi|328462235|gb|EGF34350.1| tRNA (uracil-5-)-methyltransferase Gid [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 103

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE---IDA 64
           V VIG G AG EAA   A+ G    L   +   +           L   + +R     +A
Sbjct: 4   VNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
           +  L   +     I  +  +    PA  G     DRE +   
Sbjct: 64  VGLLKEEMRRLHSIIMQSADATAVPA--GGALAVDREPFPSW 103


>gi|149174678|ref|ZP_01853303.1| hypothetical protein PM8797T_26120 [Planctomyces maris DSM 8797]
 gi|148846372|gb|EDL60710.1| hypothetical protein PM8797T_26120 [Planctomyces maris DSM 8797]
          Length = 765

 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 122/385 (31%), Gaps = 60/385 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YD++V+GGG++G  AA  AA++G S AL          +   P +GG G      E+
Sbjct: 193 TKKYDLVVVGGGYSGMGAAISAARMGCSVAL----------IQDRPVLGGNGSS----EV 238

Query: 63  DAL-DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR-EILSQENLDVI 120
                GL+ R       +          A  G       E Y   ++   + +++N+D+ 
Sbjct: 239 RVWAQGLVRRGKYPHIGEIIAEFADSAAASPGT-----YEEYGDKLKEDVVRAEKNIDLF 293

Query: 121 QGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG---RMGD 176
                   N E   I S+    N+  R S      G+        G++   AG      +
Sbjct: 294 LNTRAYEVNKEGESIQSV-TAFNT--RTSKRTEFLGSLFADCTGHGEIGYLAGADYYTHE 350

Query: 177 SPSNSLFN--SFMKFDFDTGRLKTGTPARLDGKTIIWDK-------TEKQFADERLIPFS 227
                + N  ++ + D +           L+ +   + K        E  F  + +    
Sbjct: 351 KGHMGMSNMWTWKEADTEKSFPDVSWALNLNMEDFPYPKRFHGEWFWESGFDKDPIKDLE 410

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
            M D              N             +A  +      GPR    +   ++   +
Sbjct: 411 SMRDWNFRAVYGAWNAIKNKGGKD-----KHANAELTWMAFIGGPRESRMLRGDVI-LRK 464

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI-----IRPGYAIE 342
           ++       P+G        +      P++   Q     P + +         R GY + 
Sbjct: 465 KDIVNKIAFPDGCVPSTWSID---LHYPKKQYMQKYPEDPFISQAVFDSRVDRRFGYPVP 521

Query: 343 YDYINPKELFPTLETKKISGLFLAG 367
           Y             ++ I  LF+AG
Sbjct: 522 YRCFY---------SRNIPNLFMAG 537


>gi|295110983|emb|CBL27733.1| conserved hypothetical protein TIGR00275 [Synergistetes bacterium
           SGP1]
          Length = 414

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 130/426 (30%), Gaps = 90/426 (21%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-EI 62
             +D IVIGGG AG  AA  AA+LG    L    T    S+     + G G+ +    E 
Sbjct: 2   ERFDAIVIGGGPAGLMAALRAAELGERVLL----TEKNASLGTKLLLAGRGRCNFTNAEP 57

Query: 63  DALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------------- 103
           D        G  GR   +A  +F            G  T  +R                 
Sbjct: 58  DPAAFIARYGEKGRFLWSAFSRFGPAETLAFFQKHGVETVTERGGRVFPAEGGGQRVLNA 117

Query: 104 -----RLAMQREILSQE--NLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTT 154
                R    R + S    +L V  G V       E+   +  ++              T
Sbjct: 118 LLMLCRKFGVRILRSSPVRSLKVRDGRVERLITEVEELEANRFIVATGGKSYPR-----T 172

Query: 155 GTFLRGVIHIGKLKIPAGRMGDSPSNSLF-----NSFMKFDFDTGRLKTGTPARLDGKTI 209
           G+   G     +    AG    +P  +L       +++K             A +DGK +
Sbjct: 173 GSTGDG----YRFAEQAGHAIVTPMPALVPLKTHETWVKLAHGCNLRNVRVTALVDGKRV 228

Query: 210 IWDKTEKQFADERLIPFSFMTDKITN--RQIECGITR-------------TNLETHRIIM 254
                 ++F +     F      I +    +   + +             T  +    + 
Sbjct: 229 D-----ERFGEMEFTNFGVSGPVIMDMSSSVPDWMAQGPLSLSIDLKPALTREKLTERVR 283

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
            +++  +         G    P I   I+   +             +    Y +      
Sbjct: 284 RDLEKFSARRFAGALKGLVPGPLIPM-ILELSDVP----------EDKPAAYVSSEEAEA 332

Query: 315 PEEIQHQFIRTIPGL---EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ--- 368
             ++      T+ GL       + R G +++   ++P     T+ +K+   L+ AG+   
Sbjct: 333 TADLLKDIRLTVNGLWSFNNAVVTRGGVSLKE--VDP----ATMRSKRCENLYFAGEVLD 386

Query: 369 INGTTG 374
           +NG +G
Sbjct: 387 LNGPSG 392


>gi|187934381|ref|YP_001886548.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum B str. Eklund 17B]
 gi|187722534|gb|ACD23755.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum B str. Eklund 17B]
          Length = 425

 Score = 67.7 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 139/421 (33%), Gaps = 57/421 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V++IGGG +GC AA  + K GA   +I      +G  +    +   G+     E+ AL G
Sbjct: 3   VVIIGGGWSGCAAAISSKKAGADVVVIEKTDLLLGLGNVGGIMRNNGRYTASEELIALGG 62

Query: 68  -LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             + ++ D       +       A        + E+ +      I       +I+  V  
Sbjct: 63  GDLIKITDRVSTHRNIDFPGHKHATLYNVNLIEGEVRKYLTSLGIE-----ILIESRVTD 117

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              + N +  + + D             GT++ G + I +     G MG+        S 
Sbjct: 118 VKFDGNKLHGVYLSD-------------GTYIEGDVFI-ETTGTTGPMGNCLRYGNGCSM 163

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
                     +     R           + Q   +  +  +F           C + + +
Sbjct: 164 CILRCPAFGPRISISER-------CGVADIQGERDDDVLGAFSG--------SCKLAKES 208

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
           L     I   +    +    I      Y         ++  +   +  +  +  +  +  
Sbjct: 209 L--SEDIKNKLDKDGVVVLQIPKEDVNYGKLSTKVCQQYALKEFAENVVLLDTGHAKL-- 264

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKI 360
              ++T  P E     +R I GLE    + P YA      I Y  + P+     L+   +
Sbjct: 265 ---MTTYYPLEK----LRKIKGLEYAKYVDP-YAGSKGNSIRYLSVAPR--TNDLKVVGV 314

Query: 361 SGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
             LF AG+ +G   G+ EA   G +AG N+ R    +  +    + + +G +I     K 
Sbjct: 315 DNLFCAGEKSGLFVGHTEAICTGTLAGHNAVRLVMGMSLLILPSSIA-VGDIISFANEKA 373

Query: 420 V 420
            
Sbjct: 374 N 374


>gi|56964569|ref|YP_176300.1| hypothetical protein ABC2805 [Bacillus clausii KSM-K16]
          Length = 194

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVI++GGG +G  A+  AA+ GA   L          +    AI G G+ ++   ++ 
Sbjct: 3   NYDVIIVGGGPSGLMASVAAAQQGAHVLL----LDKGNKLGRKLAISGGGRCNVTNRMER 58

Query: 65  LDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR------ELYRLAMQREIL 112
              +      GR   +    F   ++       G R +  DR            +   +L
Sbjct: 59  KQLIENIPGNGRFMHSPFAVFDNESIIAFFEGLGIRLKEEDRGRMFPVNDKAQTVVDTLL 118

Query: 113 SQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +Q   LDV       VA    E   +  + ++D   +    +++ TG
Sbjct: 119 AQIRKLDVTIRTNARVADIIVEDGQVVGVALEDGQRLGTKALIIATG 165


>gi|134300053|ref|YP_001113549.1| hypothetical protein Dred_2209 [Desulfotomaculum reducens MI-1]
 gi|134052753|gb|ABO50724.1| HI0933 family protein [Desulfotomaculum reducens MI-1]
          Length = 430

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++R YD++V+GGG AG  AAA +A LGA   L          +     I G G+ +L   
Sbjct: 3   LHRDYDILVVGGGPAGMMAAARSATLGARVLL----LEKNNCLGKKMLITGGGRCNLTNS 58

Query: 62  IDALDGLM-------GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYR 104
            +     M       G+   +A  QF   +++      G +T+           DR    
Sbjct: 59  ANI--NEMIENIPGNGKFVYSALHQFSGEDLRNFLGSLGIKTKVEERGRVFPVSDRAADV 116

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +    + L Q  + +  G  V     E      + M D   +R   VV+ TG
Sbjct: 117 VLALEKYLRQSGVSIRYGSKVDSLLLENQSCRGVFM-DGESLRAKAVVVATG 167


>gi|153813600|ref|ZP_01966268.1| hypothetical protein RUMOBE_04023 [Ruminococcus obeum ATCC 29174]
 gi|149830298|gb|EDM85391.1| hypothetical protein RUMOBE_04023 [Ruminococcus obeum ATCC 29174]
          Length = 500

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 15/165 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+GGG AG  AA  + KLGA T LI      +G  +    +G +   H   E
Sbjct: 1   MKQIYDVIVVGGGPAGIMAAMASGKLGADTLLIEKN-GFLGGAATASVLGPISPFHYKDE 59

Query: 62  IDALD---GLMGRVADAAGI--QFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQE 115
                     M R+   AG     + L+    P   G      DRE Y+      +    
Sbjct: 60  QVINGIPQDFMDRMVKEAGSTGHMKTLD----PYGSGDSLGFYDREKYKYVAVEMLKEFG 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVM----QDNSMIRCSTVVLTTGT 156
              +    +   + +   ++ +       D        +V  TG 
Sbjct: 116 VDILYHSMIDSVDCDNFKLTGLTTVSKGGDRLHFSAHVIVDATGD 160


>gi|328957964|ref|YP_004375350.1| putative NAD(FAD) dehydrogenase [Carnobacterium sp. 17-4]
 gi|328674288|gb|AEB30334.1| putative NAD(FAD) dehydrogenase [Carnobacterium sp. 17-4]
          Length = 429

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 148/430 (34%), Gaps = 59/430 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----V 59
           +YDV+V+GGG +G  AA  AA+ GA  A+         S+     + G G+ ++      
Sbjct: 9   TYDVLVVGGGTSGMMAAISAAEHGAKVAV----IEKNSSLGRKLLVTGGGRCNVTNNRDK 64

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQR 109
            EI A     GR   +A  Q+   ++       G   +           D+    L    
Sbjct: 65  EEIIAHIPGNGRFLYSAFYQYDNYDIMDFFRSNGVTLKEEDHGRMFPITDKSRTILEALI 124

Query: 110 EILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHI 164
            I+ +  +D+  +  V     ++  ++ + +QD   I  S V+++TG             
Sbjct: 125 GIMDRLEVDIYTEAPVETLLFDEGKVTGVQLQDGRNIEASCVIVSTGGKAMPRTGSTGDG 184

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE---KQFADE 221
            K    AG        +         F       G   R    +++  K +       D 
Sbjct: 185 YKWAKKAGHTITPLYPTESPILSDEPFIKDTTLQGLSLRDVALSVLNKKNKTVVTHQMDM 244

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIM--------ENIKHSAIYSGDIKSYGPR 273
               F      +    +    T    +T  + M           + +      IK+ G +
Sbjct: 245 IFTHFGISGPAVLRCSMFVHQTMKRDKTEEVTMSLDALPNVSKGELTQQIQKLIKNDGDK 304

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
              +    +V   ER     F    GL+ +          L +    +  + I  ++   
Sbjct: 305 SAKNALKGLV--PERYLLFAFARA-GLDENA--------PLKQAAPDKITQFIEFIKDFR 353

Query: 334 IIRPG-YAIEYDY-----INPKELFP-TLETKKISGLFLAGQI---NGTTG---YEEAAA 380
               G   IE  +     I+ KE+ P T+E+K   GLF  G+I   NG TG      A  
Sbjct: 354 FTANGTQPIEKAFVTGGGIHTKEVNPKTMESKFTQGLFFTGEILDYNGYTGGYNITGAFI 413

Query: 381 QGLVAGINSA 390
            G +AG+++A
Sbjct: 414 TGRIAGMHAA 423


>gi|325263904|ref|ZP_08130637.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. D5]
 gi|324030942|gb|EGB92224.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. D5]
          Length = 405

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 133/420 (31%), Gaps = 57/420 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA  AA+ GA   ++ HK   IG    +   G     +L +E      
Sbjct: 4   VAVIGGGASGLMAAITAARNGARVCILEHK-DRIGKKILSTGNGRCNFTNLHQEPICYHS 62

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN-----LDVIQG 122
                            ++K  A +      +  +Y       +  Q +     LDV++ 
Sbjct: 63  ENVLFPWKT--------IEKFSAQQTIAFFLELGIYSKNRNGYLYPQSDQASAVLDVLRM 114

Query: 123 EVAGFNTEKNIIS----------SIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           E      E +  +            +++ N+   R   V+L  G+               
Sbjct: 115 EARRLGVEVHTETECREIVPNKNGFLLRTNTKDYRAQKVILAAGSKAAPSSGSDGSGYTL 174

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ-----------FAD 220
            +        +  S ++        K+ +  R+ G   I+   E Q           +  
Sbjct: 175 AKQLGHRLVPVLPSLVQLKCRENFYKSVSGVRVGGSVSIYVDGECQAKDTGEIQLTGYGI 234

Query: 221 ERLIPFSFMTDK----ITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
             +  F             + +   +      T    +  ++ + I +  +K+    +  
Sbjct: 235 SGIPVFQVSRCAAIGLYEKKTVTAELNFMPDFTEEQFLAFLQ-NRIAARPMKTAEEFFVG 293

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
               K+     +  H     P G  T       ++  +        +      ++  + R
Sbjct: 294 LFHKKLSELWLKLAHLDRTRPVGEWTKE-EIQNLTNLIQHFFTE--VTETNSFDQAQVCR 350

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINSA 390
            G       +N +E+  TLE++ + GL+ AG+I    G         A + G VAG  +A
Sbjct: 351 GG-------VNTEEVTDTLESRFVPGLYFAGEILDVDGLCGGYNLQWAWSSGYVAGKEAA 403


>gi|56808264|ref|ZP_00366033.1| COG1206: NAD(FAD)-utilizing enzyme possibly involved in translation
           [Streptococcus pyogenes M49 591]
          Length = 107

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 25/111 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSCNPAIGG----LG 54
           + VIG G AG EAA   AK G    L           HKT+    + C+ +  G      
Sbjct: 9   INVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVRATPQHKTTNFAELVCSNSFRGDSLTNA 68

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
            G L  E+  LD ++ R  +A           + PA  G     DRE Y  
Sbjct: 69  VGLLKEEMRRLDSIIMRNGEA----------NRVPA--GGAMAVDREGYAE 107


>gi|168186277|ref|ZP_02620912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
 gi|169295753|gb|EDS77886.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum C str. Eklund]
          Length = 425

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 141/422 (33%), Gaps = 71/422 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +++IGGG +GC AA  A K GA  AL       +G  +    +   G+     E+ AL  
Sbjct: 3   IVIIGGGWSGCAAAITAKKAGADVALYEKTDMLLGLGNVGGIMRNNGRYTASEELIALGA 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G +  + D       +       A        + E+    M   I     + +I   V  
Sbjct: 63  GDLINITDKNTRHKNIDFPGHEHAWLYDVNLIEAEVRNYLMDMGID----IHLI-SRVVN 117

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVV---LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              E N I  + + + + I     +    TTG     + +     +   R          
Sbjct: 118 VEKEGNKIKGVYLSNGTYIEGDAFIETTGTTGPMGNCLRYGNGCSMCILRCP-------- 169

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
                F       K      L G+           ADE    FS            C + 
Sbjct: 170 ----AFGPRISISKRAGIEDLKGE----------RADEVYGAFS----------GSCKLC 205

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE----PEG 299
           + +     I  + +K        I    P+   + +   V+  ++   + F E     + 
Sbjct: 206 KES-----IDSKIVKELEEKGVVILKV-PKEDVNFDKLKVKVCQQYALKEFAENVILLDT 259

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFP 353
            +  +         +      Q +R I GLE V  + P YA      + Y  I P+    
Sbjct: 260 GHVKL---------MTCFYPLQKLRKIKGLEHVKYVDP-YAGGKGNSVRYLAITPR--DN 307

Query: 354 TLETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
            ++   +  LF  G+ +G   G+ EA + G +AG N+ R +   + I     ++ IG +I
Sbjct: 308 AMKVIGLDNLFCGGEKSGLFVGHTEAISTGSLAGANAVRHAAGKNMIVLPN-ETVIGDII 366

Query: 413 DD 414
           D 
Sbjct: 367 DF 368


>gi|168333290|ref|ZP_02691574.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 594

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 30/199 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YD IV+GGG +G  AA  AA+ G  TAL          +   P +GG     +   I+
Sbjct: 2   REYDFIVVGGGMSGVCAAISAARNGVKTAL----------VHNRPVLGGNASSEVKVSIN 51

Query: 64  ALDGLMG-RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQ 121
               +   + A  +GI   +L   K   V       D           I ++ N+D+ + 
Sbjct: 52  GAGRIGNFQHAMESGIILEILLKNKKFNVGHSFNILD-----HINWEFIKNEPNIDLYLN 106

Query: 122 GEVAGFNTEKNIISS-----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
             + G   E N I S     +  Q   ++       TTG           L   AG    
Sbjct: 107 TSMTGCVVEDNKIKSITAFQVTTQKEFVLAAKLFCDTTGD--------ANLAYAAGADYT 158

Query: 177 SPSNSLFNSFMKFDFDTGR 195
               +          +   
Sbjct: 159 IGHEARSTYNESLAPEVAT 177


>gi|207111728|ref|ZP_03245890.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 39

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
             Y NG+ST+LP ++Q + I +I GLE   I R GYAIE
Sbjct: 1   EYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIE 39


>gi|194337287|ref|YP_002019081.1| geranylgeranyl reductase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309764|gb|ACF44464.1| geranylgeranyl reductase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 398

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVR 60
           +SYDV++ G G AGC +A   A+ G    L+   T     +    C   I       L+ 
Sbjct: 2   KSYDVVISGAGPAGCSSALFLAQKGCRVLLLDKATFPREKV----CGDGI-TAASSTLLE 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQRE 110
           E+  +D L  R+      +   +    G  ++G   Q            R+ +   +   
Sbjct: 57  EMGVMDRLRLRLGPLMVCKGVTIFSPAGTVLQGRILQTGSLTGATYVIPRKEFDDCLIAC 116

Query: 111 ILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--LRGVIHI--- 164
           +    ++ +++   V     E +    +            V+   G +  +   +H+   
Sbjct: 117 VKEHSSITLLENTTVTDIIMEGDRARGVRSSGGDWF-GRVVIAADGAYSPIASRLHLANK 175

Query: 165 -GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
             K +  A R   S    L +S ++  +D   + 
Sbjct: 176 EKKHQGFAIRAYYSKVEGLTDS-IELHYDKSMVP 208


>gi|255524795|ref|ZP_05391746.1| glucose-inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296185023|ref|ZP_06853434.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
 gi|255511568|gb|EET87857.1| glucose-inhibited division protein A [Clostridium carboxidivorans
           P7]
 gi|296050805|gb|EFG90228.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
          Length = 426

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 23/164 (14%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLE    + P YA      I Y  + P+     ++ K IS LF  G
Sbjct: 266 MTSYYPLEKLRKIKGLENSKYVDP-YAGGKGNSIRYLSVAPR--TDDMKVKGISNLFCGG 322

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           + +G   G+ EA   G +AG N+ R    +  +   +T + IG +I           Y+M
Sbjct: 323 EKSGLFVGHTEAICTGTLAGHNAVRCVLDMPPLILPKTTA-IGDIIAFAN-------YKM 374

Query: 427 FTSRA-EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
            T      R +        R+     K G     R++  A+  +
Sbjct: 375 MTKEGRRNRYTFAGAEYFKRMQ----KSGLYSTDRKEVEARIQK 414


>gi|170290972|ref|YP_001737788.1| geranylgeranyl reductase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170175052|gb|ACB08105.1| geranylgeranyl reductase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 380

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DVIV+GGG AG  AA  +A+LG    L+   +       C     G G      E  
Sbjct: 2   EEWDVIVVGGGPAGLSAAKFSAELGLKVILLEAYSDIRAWKPC-----GEGTSKTTFE-- 54

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA---MQREILSQENL--- 117
                   +    G+    L++ K  A  G   +     Y +       E+  +  L   
Sbjct: 55  -----TAGIEPKPGVVSNELSM-KVYAPSGKYVEIPLHGYAINKDLFLLELAKKAYLAGA 108

Query: 118 DVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           ++  GE V     E   +  +       +R   VV   G 
Sbjct: 109 EIRVGERVESVLKENGRVCGVKTAKGETLRGKVVVGADGY 148


>gi|118442870|ref|YP_878115.1| hypothetical protein NT01CX_2042 [Clostridium novyi NT]
 gi|118133326|gb|ABK60370.1| conserved protein [Clostridium novyi NT]
          Length = 425

 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 141/423 (33%), Gaps = 73/423 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +++IGGG +GC AA  A K GA  AL       +G  +    +   G+     E+ AL  
Sbjct: 3   IVIIGGGWSGCAAAITAKKAGADVALYEKTDMLLGLGNVGGIMRNNGRYTASEELIALGA 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VA 125
           G +  + D       +                D  L    +++ ++    +D+     V 
Sbjct: 63  GDLINITDKNTRHKNIDFP-----GHEHAWLYDVNLIEAEVRKYLIDI-GIDIHLISRVV 116

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVV---LTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
               E N I  + + D + +     +    TTG     + +     +   R         
Sbjct: 117 NVEKEGNKIKGVYLSDGTYVEGDAFIETTGTTGPMGNCLRYGNGCSMCILRCP------- 169

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
                 F       K      L G+           ADE    FS            C +
Sbjct: 170 -----AFGPRISISKRAGIEDLKGE----------RADEVYGAFS----------GSCKL 204

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302
            + +     I  + +K        I    P+   + +   V+  ++   + F E      
Sbjct: 205 CKES-----IDPKIVKELEEKGVVILKV-PKEDVNFDKLKVKVCQQYALKEFAE------ 252

Query: 303 DVVYPNGISTA----LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELF 352
                  + T     +      Q +R I GLE V  + P YA      + Y  I P+   
Sbjct: 253 ---NVVLLDTGHVKLMTCFYPLQKLRKIKGLEHVKYVDP-YAGGKGNSVRYLAITPR--D 306

Query: 353 PTLETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM 411
             ++   +  LF  G+ +G   G+ EA + G +AG N+ R +   + I     ++ IG +
Sbjct: 307 NAMKVIGLDNLFCGGEKSGLFVGHTEAISTGSLAGANAVRHAAGKNMIVLPN-ETVIGDI 365

Query: 412 IDD 414
           ID 
Sbjct: 366 IDF 368


>gi|169839320|ref|ZP_02872508.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [candidate division TM7 single-cell isolate TM7a]
          Length = 57

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 381 QGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRI 435
           QG++AGIN+A K    +     R  SYIG MIDDL +K + EPYRMFT+R+E+R+
Sbjct: 1   QGIIAGINAALKIKGEEPFILDRESSYIGTMIDDLINKELFEPYRMFTARSEFRL 55


>gi|83591131|ref|YP_431140.1| FAD dependent oxidoreductase [Moorella thermoacetica ATCC 39073]
 gi|83574045|gb|ABC20597.1| FAD dependent oxidoreductase [Moorella thermoacetica ATCC 39073]
          Length = 466

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 145/480 (30%), Gaps = 110/480 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAK--LGASTALI----------THKTSTIGS-MSCNP 48
           +   YDV+++G G AG   A    +   G    ++               T  S + CNP
Sbjct: 1   MAEGYDVVIVGAGPAGIFTALELVRQRSGLKVLILEKGHGLQRRVCPSQETRSSCLHCNP 60

Query: 49  -----AIGG-----LGKGHLVREIDALDGL---------MGRVADAAGIQFRVLNVKKG- 88
                  GG      GK  L  E+               +    D   + F   +   G 
Sbjct: 61  CSVVSGWGGAGAFSDGKLTLSPEVGGWLNEYIPQQDVTSLIDYVDKIYLYFGAPDRVYGG 120

Query: 89  ---------------------PAV----RGPRTQADRELYRLAMQREILSQENLDVI-QG 122
                                PA        RTQ        AM+  +  +  ++V  + 
Sbjct: 121 PDDERILDIQRQAILADLKLIPAPIRHLGTGRTQEI----LQAMKDYLEER-GVEVRTET 175

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            V     + + ++ +V +    I+   VVL  G    G   + K+   AG++G   + + 
Sbjct: 176 PVEEILVDGHRVAGVVTRKGEEIKARYVVLAPG--REGSDWLRKV---AGKLGLKLAVNP 230

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------------ 230
            +  ++ +     ++  T    + K I + +      D+R+  F                
Sbjct: 231 VDVGVRVEVPAAVMEHLTSVIYESKFIFYSR----KFDDRVRTFCMNPYGEVVLENNEGL 286

Query: 231 -DKITNRQIECGITRTNLE--THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
                +   E   T TN      +   E  K    Y   +          +   + R G+
Sbjct: 287 VTVNGHSYAEKKTTNTNFALLVSKTFTEPFKEPIAYGRYVAQLANLLGGGVL--VQRLGD 344

Query: 288 R--NGHQIFLEPE----GLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--- 338
                       E            P  +S   P       I  +  ++K   I PG   
Sbjct: 345 LLSGRRTTADRLEKGLVNPTLTEATPGDLSLVFPYRHLTAIIEMLQAMDK---IAPGVYS 401

Query: 339 -----YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSAR 391
                Y +E  + + +  L   LET  I GL+ AG   G T G  +A+A G++       
Sbjct: 402 RHTLLYGVEVKFYSSRLNLTRDLET-NIRGLYAAGDGAGVTRGLAQASAAGVITARAIMA 460


>gi|66576096|gb|AAY51655.1| mitochondrial MTO1 [Theropithecus gelada]
          Length = 76

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGVISPHHNLSLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|218512598|ref|ZP_03509438.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli 8C-3]
          Length = 215

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 29/209 (13%)

Query: 52  GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G +  E+     L+   AD                  G     DR+ +  A+ + I
Sbjct: 19  SNAVGVIHAEMRMAGSLIMAAADRH------------QVPAGGALAVDRDGFSEAVTKAI 66

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGTFLRGVI-------- 162
                + V++ E+ G       ++ +      +    S +   TG               
Sbjct: 67  HDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVY 126

Query: 163 ---HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +     R            ++    D  +      A + G T+ + + E    
Sbjct: 127 RDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPY 186

Query: 220 DERLIPFSFMTDK-----ITNRQIECGIT 243
            +  +P   M ++             G+T
Sbjct: 187 FDGCLPIEVMAERGRETLRHGPMKPMGLT 215


>gi|125973226|ref|YP_001037136.1| FAD dependent oxidoreductase [Clostridium thermocellum ATCC 27405]
 gi|256003702|ref|ZP_05428690.1| HI0933 family protein [Clostridium thermocellum DSM 2360]
 gi|281417425|ref|ZP_06248445.1| HI0933 family protein [Clostridium thermocellum JW20]
 gi|125713451|gb|ABN51943.1| FAD dependent oxidoreductase [Clostridium thermocellum ATCC 27405]
 gi|255992263|gb|EEU02357.1| HI0933 family protein [Clostridium thermocellum DSM 2360]
 gi|281408827|gb|EFB39085.1| HI0933 family protein [Clostridium thermocellum JW20]
 gi|316940544|gb|ADU74578.1| HI0933 family protein [Clostridium thermocellum DSM 1313]
          Length = 409

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 135/409 (33%), Gaps = 65/409 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG G  G  AA  AA+ G +  L       IG       I G G+ ++    D    
Sbjct: 5   VVVIGAGPGGIMAAGKAAERGHNVTLFEKN-DRIG---KKILISGKGRCNITNNTDIEGL 60

Query: 68  LM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQREIL--- 112
           +      G    +A   F   ++ +     G +T+ +R             +   +L   
Sbjct: 61  IENIPGNGNFLYSAFYTFSNHDLIEFFEQYGLKTKVERGGRVFPVSDDAKDVNNALLKFL 120

Query: 113 --SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
             ++ NL +    V     + N ++ +V++D + + C  VVL TG               
Sbjct: 121 NKAKVNLRL-NSPVQEIKAKNNTVTGVVLKDGTEVPCDAVVLATGGASYPGTGSTGDGYV 179

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-----DKTEKQFADERLIP 225
             +        L  S +    +   +K      L   +I        K    F +     
Sbjct: 180 MAKKLGHTIVDLKPSLVPLLAEEEWVKELQGLSLKNVSITILSKAGKKIYTDFGEMLFTH 239

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
           F      I             L   R I++    +     D+K         ++++I+R 
Sbjct: 240 FGVSGPII-------------LSASRHILDYDYKNVKLVIDLKP--ALSEEKLDERILRD 284

Query: 286 GERNGHQIFLE-----------PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE-KVN 333
            E+   + +             P  +    + P      + +E +   +R +  L   +N
Sbjct: 285 FEKYSRKQYKNSLDDLLPKKMIPVIVKLSGIEPEKFVNQIKKEERRALVRLLKNLTLNIN 344

Query: 334 IIRP-------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
             RP          +  D INP     T+E+K + GL+ AG+I    GY
Sbjct: 345 GSRPIKEAIVTAGGVSTDEINP----STMESKLVKGLYFAGEIIDVDGY 389


>gi|207093799|ref|ZP_03241586.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 39

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 573 LPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLL 610
           +P LS E  EKL   +P +L +AS+I G+TPA L++L 
Sbjct: 2   IPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLH 39


>gi|66576086|gb|AAY51650.1| mitochondrial MTO1 [Hylobates lar]
          Length = 76

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISSHHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|66576042|gb|AAY51628.1| mitochondrial MTO1-3 [Homo sapiens]
          Length = 76

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAYHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|66576082|gb|AAY51648.1| mitochondrial MTO1 [Pan troglodytes]
 gi|66576084|gb|AAY51649.1| mitochondrial MTO1 [Pongo pygmaeus]
          Length = 76

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 25/76 (32%)

Query: 317 EIQHQFIRTIPGLEKVNIIRP-------------------------GYAIEYDYINPKEL 351
           E+Q + I  I GLEK  +I+P                         GY ++YDY++P+++
Sbjct: 1   ELQEKMITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQI 60

Query: 352 FPTLETKKISGLFLAG 367
            P+LET  +  LF AG
Sbjct: 61  TPSLETHLVQRLFFAG 76


>gi|66576100|gb|AAY51657.1| mitochondrial MTO1 [Nasalis larvatus]
          Length = 50

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
           E+Q + I  I GLEK  +++PGY ++YDY++P+++ P+LET  +  
Sbjct: 1   ELQEKMITCIRGLEKAKVMQPGYGVQYDYLDPRQITPSLETHLVQR 46


>gi|253574615|ref|ZP_04851956.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846320|gb|EES74327.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 422

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 139/443 (31%), Gaps = 81/443 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--RE 61
           +  DVIVIGGG +G  AA  A++ G+   L          +     I G G+ ++   +E
Sbjct: 2   KKADVIVIGGGPSGLMAAIAASEQGSKVLL----LDKGDKLGRKLGISGGGRCNVTNAKE 57

Query: 62  IDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRL-AM 107
           +D L   +   GR   +A   F   ++       G R +          +D+    + A+
Sbjct: 58  LDELIQFIPGNGRFLYSALTTFGNKDIIAFFEGLGIRLKEEDNGRMFPVSDKAKTVVDAL 117

Query: 108 QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGTFL 158
             ++ SQ  + +     VA    +      + ++   ++    V++         TG+  
Sbjct: 118 INKVRSQ-GVQIRVNSPVAEVLYDNGRTVGVKLKTGEVLESHAVIVAVGGKSVPQTGSTG 176

Query: 159 RGVIHIGK------LKIPAG-RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
            G     K         P    +  +                  L    P          
Sbjct: 177 DGYAWAEKAGHTITELFPTEVPLTSNEPFIQSKELQGLSLRNVSLSVWNPKG-------- 228

Query: 212 DKTEKQFADERLIPFSFMTD--------------KITNRQIECGITRTNLETHRIIMENI 257
            K  +   D     F                   +     IE  +  T  ++   +    
Sbjct: 229 KKLIEHHGDMLFTHFGISGPIALRCSQFVVKALKQFGTGNIEVSVDFTPDKSKDEVYNET 288

Query: 258 KHSAIYSGD--IKSYGPRYCPSIEDKIV-RFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314
              A       IK+    Y P     I+ +  E + H  +           +       L
Sbjct: 289 LKLAEQDPKKSIKNVLRAYLPEKIIPILLQKAELDPHLTYA----HIPKQKWLQFAQ--L 342

Query: 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
            +    +   T+  +E+  +   G  I+   I+PK    T+++K + GL+  G+I    G
Sbjct: 343 VKRFPIRVYGTL-SIEEAFVTGGGVNIKE--IDPK----TMQSKLMPGLYFCGEILDVHG 395

Query: 375 Y------EEAAAQGLVAGINSAR 391
           Y        A A G  AG N+A 
Sbjct: 396 YTGGYNITAAFATGYTAGRNAAL 418


>gi|332981309|ref|YP_004462750.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332698987|gb|AEE95928.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Mahella australiensis 50-1 BON]
          Length = 590

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 30/166 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I R YD++++GGG +G  AA  AA+ G+ TA+          +   P  GG     +   
Sbjct: 7   IERQYDIVIVGGGMSGICAAIAAARHGSKTAI----------IQNRPVFGGNASSEIR-- 54

Query: 62  IDALD-GLMGRVADA--AGIQFRVL--NVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           +      + G  +DA   GI   +L  N +  P       Q    ++   M  ++  Q+N
Sbjct: 55  MHICGADVHGSRSDARETGILEEILLENRRVNP-------QMSFSVFDTVMWEKVKFQDN 107

Query: 117 LDVI------QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           LD+       Q E       K I   I  +     +    V  TG 
Sbjct: 108 LDMYLNTHMTQVETTDNKIVKIIAEQITTEKIFEFKAKIFVDATGD 153


>gi|167630782|ref|YP_001681281.1| glucose inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
 gi|167593522|gb|ABZ85270.1| glucose inhibited division protein a [Heliobacterium modesticaldum
           Ice1]
          Length = 428

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 117/382 (30%), Gaps = 56/382 (14%)

Query: 50  IGGLGKGHLVREIDAL-DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           +   G+     E+ A+  G + +V D       V       A      + +      A++
Sbjct: 46  MRNNGRFTATEEMLAMGGGDLFQVTDEVSRHKNVAFPGHEHASLYDVAKVE-----PAVR 100

Query: 109 REILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           + +    N+       V     + + I+ +V+ +   I     +  +GT           
Sbjct: 101 QRLSKYPNIHFRTLARVRDITMQGSRITGVVIDETDEITGDVFIDASGT--------AGP 152

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
           +   G+ G+     ++     F              + GK              +L   S
Sbjct: 153 QGNCGKYGNGCVMCIYRCP-TFGGRVSIAGKAGVKEVVGKKADGS-FGAMSGSCKLHKDS 210

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
              D +        + +  +    I  +  K  A+     + Y  +      + I+    
Sbjct: 211 IRDDIVDT------LNKRGVAVVAIPEDLRKEDALSQKACQQYALK---EFAENIILL-- 259

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP-----GYAIE 342
             GH   + P        YP               +R IPG E      P     G +I 
Sbjct: 260 DTGHAKLMSP-------YYP------------LDKLRHIPGFENARFEDPYSGGIGNSIR 300

Query: 343 YDYINPKELFPTLETK-KISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCIC 400
           Y  + P+    TL+ K  +  LF AG+  G   G+ EA   G +AG N+ R + +   + 
Sbjct: 301 YVGMCPR--DNTLKVKGDVENLFCAGEKAGLLVGHTEAIVTGALAGHNAVRFALQKPLLE 358

Query: 401 FSRTDSYIGVMIDDLTSKGVLE 422
             R+ +    +          E
Sbjct: 359 LPRSLAVGDAIAHVNEQMQTEE 380


>gi|28211061|ref|NP_782005.1| hypothetical protein CTC01382 [Clostridium tetani E88]
 gi|28203500|gb|AAO35942.1| conserved protein [Clostridium tetani E88]
          Length = 425

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGY 375
           +R I GLEK   I P YA      I Y  + P+    +++ K I  LF AG+ +G   G+
Sbjct: 274 LRKIKGLEKAKYIDP-YAGGKANSIRYLSVAPR--RDSMKVKGIDNLFCAGEKSGLFVGH 330

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            EA   G +AG N+ R    +  +   +T + IG +I     K
Sbjct: 331 TEAMCTGALAGHNAVRHLLGMPLLILPKTLA-IGDLISYANFK 372


>gi|257427965|ref|ZP_05604363.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
          subsp. aureus 65-1322]
 gi|257274806|gb|EEV06293.1| tRNA (uracil-5-)-methyltransferase Gid [Staphylococcus aureus
          subsp. aureus 65-1322]
          Length = 78

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG----LG 54
          V VIG G AG EAA   A+ G    LI          H T     + C+ ++ G     G
Sbjct: 5  VNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNG 64

Query: 55 KGHLVREIDALDGL 68
           G L  E+  L+ +
Sbjct: 65 VGVLKEEMRRLNSI 78


>gi|307688023|ref|ZP_07630469.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium cellulovorans 743B]
          Length = 80

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 460 RQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK---QDGKTRTAYEFLSYPDFSIQ 516
           R  RF + ++     R  LKS  +T    ++  ++        +  +  + L  P+ + +
Sbjct: 1   RWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYE 60

Query: 517 NLFSICPDARKF-SSLVIER 535
            L ++ P A         E+
Sbjct: 61  KLTTLTPFAPALTDEQAAEQ 80


>gi|306820176|ref|ZP_07453820.1| FixC protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551777|gb|EFM39724.1| FixC protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 52/175 (29%), Gaps = 33/175 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------------HKTSTIGS 43
           M    +D I++GGG AGC AA V A  G    L+                  H    I  
Sbjct: 18  MSEEKFDAIIVGGGLAGCSAAIVLANAGLEVLLVERGDFCGAKNMTGGRLYGHSLEKI-- 75

Query: 44  MSCNPAIGGLGKGHLVREIDALD-GLMGR-VADAAGIQFRVLNVKKGPAVR-GPRTQADR 100
               P         + R+I      LMG   A   G   + L+     A     R+  DR
Sbjct: 76  ---IPNFAQEA--PIERKITREKISLMGEDSAFDVGFGSKKLSSNNENASYTVLRSTFDR 130

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            L   A +        +      V     E   +   +      +    V+L  G
Sbjct: 131 WLASKAEEAGAEIIPGIL-----VDELIVEDGKVIG-ISATGEELYADVVILADG 179


>gi|220928384|ref|YP_002505293.1| HI0933 family protein [Clostridium cellulolyticum H10]
 gi|219998712|gb|ACL75313.1| HI0933 family protein [Clostridium cellulolyticum H10]
          Length = 435

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGLGKGH 57
            YDV+VIG G AG  AA  AA++GA TAL        G++  N       P +G + +G 
Sbjct: 17  HYDVVVIGSGPAGICAAVSAARMGAKTAL----IERYGTLGGNLTNGAVAPILGSVSRGT 72

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           L  E+    G+    +D  G+  +  + +K       R   D   +      +I      
Sbjct: 73  LRDELIVRLGV--PDSDETGVTQQTHDFEK-----AKRVLVD---FAHEAGVKIY----- 117

Query: 118 DVIQGEVAGFNTEKNIISSIVM--QDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             +Q  V    T+   ++ IV+  +     IR  + +  +G     V +    +   GR 
Sbjct: 118 --LQTPVVDTITDGKRLTGIVISQKTGMKVIRAKSFIDASGD--GDVAYFAGAEYEMGRE 173

Query: 175 GDS 177
           GDS
Sbjct: 174 GDS 176


>gi|153954642|ref|YP_001395407.1| hypothetical protein CKL_2024 [Clostridium kluyveri DSM 555]
 gi|219855112|ref|YP_002472234.1| hypothetical protein CKR_1769 [Clostridium kluyveri NBRC 12016]
 gi|146347500|gb|EDK34036.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219568836|dbj|BAH06820.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 161

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 323 IRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYE 376
           +R IPGLE    I P     G +I Y  + P  +   L+   +  LF AG+ +G   G+ 
Sbjct: 10  LRKIPGLENAKFIDPYSGGKGNSIRYLSVAP--VSDDLKVNNVENLFCAGEKSGLFVGHT 67

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           EA   G +AG N+ R + ++  +   + D+ IG +I     K
Sbjct: 68  EAICTGSLAGHNAVRCALEMPTLILPK-DTVIGDIIGYANYK 108


>gi|19704876|ref|NP_602371.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296328956|ref|ZP_06871464.1| FixC protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|19712763|gb|AAL93670.1| Probable electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|296153945|gb|EFG94755.1| FixC protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 431

 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 51/175 (29%), Gaps = 33/175 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALD-GLMGR--VADAAGIQFRVLNVKKGPAVRGPRTQADR 100
               P         + R+I      LM      D      ++ +  +  +    R+  DR
Sbjct: 59  ---IPNFAEEA--PIERKITREKISLMSEDSSLDIGFGSKKLSSNNENASYTVLRSTFDR 113

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 114 WLASKAEEAGAEIIPGIL-----VDELIVEDGKVVGV-SATGEELYADVVILADG 162


>gi|229823395|ref|ZP_04449464.1| hypothetical protein GCWU000282_00693 [Catonella morbi ATCC 51271]
 gi|229787170|gb|EEP23284.1| hypothetical protein GCWU000282_00693 [Catonella morbi ATCC 51271]
          Length = 449

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + S+DV+V+G G +G  AA  AA  GA   L+               + G G+ ++  
Sbjct: 1   MTHPSFDVLVVGAGSSGLMAAINAASQGARVLLLEKNK----RPGRKLLLSGGGRCNVTN 56

Query: 61  EIDALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREIL 112
                D +      G+   +A  QF   ++      RG   + +   R        R IL
Sbjct: 57  RTSRQDLIAHIPGNGKFLYSALNQFDQDDIIDFFQSRGVALKEEDHGRMFPVTNSARTIL 116

Query: 113 SQ-----ENLDV---IQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
                  E LDV    +  V       E   +  +++     +    VVL  G    G  
Sbjct: 117 DTLLAELEALDVTIWYEAPVERLLLDREAGRVRGVLLASGREVLAPAVVLAVG----GRA 172

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFM 187
           +        G      +        
Sbjct: 173 YPKTGATGDGYAWARAAGHTIERLY 197


>gi|188585883|ref|YP_001917428.1| glucose-inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350570|gb|ACB84840.1| glucose-inhibited division protein A [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 422

 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
           F ++   Q +   E  +  ++   G +  +      +++R IPG EK     P YA    
Sbjct: 237 FTKKKACQQYALKEYYDNIILLDTGHAKLMTPFFPIEYLRKIPGFEKARFEDP-YAGGVG 295

Query: 341 --IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLD 397
             I Y  + P+     L  + I  LF AG+ +G   G+ EA   G +AG N+ R     +
Sbjct: 296 NSIRYMALAPR--DNYLNVQGIKNLFCAGEKSGLLVGHTEAIITGTLAGFNAVRYGLDDE 353

Query: 398 CICFSRTDSYIGVMIDDLTSKGVLE 422
            I   R+ +  G  I  +  +   E
Sbjct: 354 LIEIPRS-TMCGEAIAYVGEQMTTE 377


>gi|260495257|ref|ZP_05815385.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_33]
 gi|260197314|gb|EEW94833.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_33]
          Length = 431

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L        D      ++ +  +  +    R+  DR 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDSSF-DIGFGSKKLSSNNENASYTVLRSTFDRW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELIVEDGKVVGV-SATGEELYADVVILADG 162


>gi|256027545|ref|ZP_05441379.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. D11]
 gi|289765504|ref|ZP_06524882.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. D11]
 gi|289717059|gb|EFD81071.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. D11]
          Length = 431

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L        D      ++ +  +  +    R+  DR 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDSSF-DIGFGSKKLSSNNENASYTVLRSTFDRW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELIVEDGKVVGV-SATGEELYADVVILADG 162


>gi|237743839|ref|ZP_04574320.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 7_1]
 gi|229432870|gb|EEO43082.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 7_1]
          Length = 431

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L        D      ++ +  +  +    R+  DR 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDSSF-DIGFGSKKLSSNNENASYTVLRSTFDRW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELIVEDGKVVGV-SATGEELYADVVILADG 162


>gi|312113897|ref|YP_004011493.1| electron-transferring-flavoprotein dehydrogenase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219026|gb|ADP70394.1| Electron-transferring-flavoprotein dehydrogenase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 434

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIV+G G AG   A   AK G        +             G +   +++ 
Sbjct: 1   MPAEKFDVIVVGAGPAGNSCAYTLAKRGLKVL----QIERGEYPGSKNVQGAIMYANMLE 56

Query: 61  ------------EIDALDGLMGRVADA--AGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
                       E   ++  +  + D+   G+ +R  +  +       R    R  +   
Sbjct: 57  KIIPDFRDDAPLERHLIEQRLWYMDDSSYTGVHYRSDDFNE---EAPNRYTIIRAQFDKW 113

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
             +++     L +++  V         +  +        I    VV+  G
Sbjct: 114 FSKKVQEAGALLILETTVTDLCFSGGKVIGVKTDRAGGTILADVVVMAEG 163


>gi|323341062|ref|ZP_08081310.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
 gi|323091483|gb|EFZ34107.1| glucose inhibited division protein A [Lactobacillus ruminis ATCC
           25644]
          Length = 62

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 578 NELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTV 618
           NE   KL+ ++P  L  AS+I G+ PA L +L +YI++  +
Sbjct: 18  NEKTCKLTRIQPEMLAHASRISGVNPADLAILAVYIEQGKI 58


>gi|56964630|ref|YP_176361.1| flavoprotein [Bacillus clausii KSM-K16]
 gi|56910873|dbj|BAD65400.1| flavoprotein [Bacillus clausii KSM-K16]
          Length = 420

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 146/443 (32%), Gaps = 77/443 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGG +G  A+  AAK GA   L          +     I G G+ ++   ++  
Sbjct: 2   YDVIVIGGGPSGLMASVAAAKNGAKVLL----LDKGDKLGRKLRISGGGRCNVTNRMERK 57

Query: 66  DGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR-------ELYRLAMQREIL 112
             +      GR   +    F   ++       G R +  DR       +  +  +   + 
Sbjct: 58  QLIENIPGNGRFMHSPFAVFDNESIIAFFEGLGIRLKEEDRGRMFPVSDSSKDVVNTLLK 117

Query: 113 SQENLDVIQ---GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
             ++L V +     V     E N    + +    ++R  +V++ TG    G         
Sbjct: 118 KIDSLGVKKRVNTPVKTILYENNKTIGVELCSKEIVRSKSVIVATGGMSMGHTGSTGDGY 177

Query: 170 P----AG-----------RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
           P    AG            +  +       S          L   T  R +GK I     
Sbjct: 178 PWAKKAGHTITELYPTEVPITLADPFIGDQSLQGLSLRGIEL---TVLRPNGKKI----- 229

Query: 215 EKQFADERLIPFSFMTDKITN------RQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
            +   D     F               + ++   T T   T ++  E    S ++   +K
Sbjct: 230 IRHEGDMIFTHFGISGPAALRCSQFVVKALKKFKTPTIPMTIKLFPEQSAES-LFQALVK 288

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
                   +++  +             +   +++  +  N      P +   +    +  
Sbjct: 289 RAKAEPKKTLKTALKGMAPERLLLYLYQSLEIDSSEMCAN-----TPHDAFRKLASALDA 343

Query: 329 L----------EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG- 374
           L          EK  +   G +I+   I PK    T+ +KK +GL+  G+   I+G TG 
Sbjct: 344 LPLHANGTLSIEKAFVTGGGVSIKE--IEPK----TMHSKKTTGLYFCGEVLDIHGYTGG 397

Query: 375 --YEEAAAQGLVAGINSARKSNK 395
                A + G  AG ++A  +NK
Sbjct: 398 FNITCAFSTGYTAGQSAALFANK 420


>gi|289524289|ref|ZP_06441143.1| FAD dependent oxidoreductase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502461|gb|EFD23625.1| FAD dependent oxidoreductase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 471

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 133/475 (28%), Gaps = 118/475 (24%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI----THK----TSTIG----SMSCN------ 47
           YDVIV+G G AG  AA   A  G S ALI    T         +G       CN      
Sbjct: 7   YDVIVVGAGPAGLFAALELANRGISVALIDKGKTLDERKCPLKMGIVRTCAHCNSCSLMC 66

Query: 48  ----------------PAIGGL-----GKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
                           P  GG      GK  L+  +D +D +       +   F      
Sbjct: 67  GWGGAGAFSDGKLTLTPHFGGNLEKYIGKERLLALLDEVDSIWREYGADSAPLFEPDPEF 126

Query: 87  KGPAVRGPRTQ----ADRELYRLAMQREILSQENLD---------VIQGEVAGFNTEKNI 133
               ++  R         ++  +   R      N+          ++  EV         
Sbjct: 127 ASKVIKKARVAGLHVIPAKIRHIGTDRTKEVLRNIYCKLCDKVHILMNTEVKRVLIADGG 186

Query: 134 ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
           ++ + +     +    V+L  G                    +  S        +     
Sbjct: 187 VAGVELSSGEKLNAKLVLLAPG-------------REGAPWMERTS-------KELGLQV 226

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI----------- 242
             L      R++    + ++  +QF + + I  S   D        C             
Sbjct: 227 DSLPVDVGVRVEIPAELAEELTEQFYEVKAIYNSPTFDDQVRTFCMCPHGEVVTEFQSDG 286

Query: 243 -----------TRTNLETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
                      +++   T+  I+      E       Y   I         S+   + R 
Sbjct: 287 GVVTVNGHSFRSKSTDNTNFAILVSTNFTEPFHDPNGYGVHIARLANMLGGSVL--VQRL 344

Query: 286 GERN--GHQIFLEPE-GLNTDVV---YPNGISTALPEEIQHQFIRTIPGLE------KVN 333
           G+            E GL    +    P  +S ALP       +  +  LE         
Sbjct: 345 GDLKLGRRSTRSRIERGLVKPTLAEAEPGDLSFALPYRHLKDILEMLEALESIIPHVNDK 404

Query: 334 IIRPGYAIE-YDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
                Y IE   Y     L   L+T  I GL+ AG   G T G  +AAA GL++ 
Sbjct: 405 YTLL-YGIEVKFYSLKLSLNEKLQT-SIKGLYAAGDGAGVTRGVIQAAASGLISA 457


>gi|296332019|ref|ZP_06874483.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675587|ref|YP_003867259.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150790|gb|EFG91675.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413831|gb|ADM38950.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 423

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL- 58
           MI  + YDVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++ 
Sbjct: 1   MIKMKQYDVIVIGGGPSGLMAAIAAGEQGADVLL----IDKGNKLGRKLAISGGGRCNVT 56

Query: 59  ----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAM 107
               V EI       GR   +A  +F   ++ K     G + + +             ++
Sbjct: 57  NRLPVEEIIKHIPGNGRFLYSAFSEFSNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSV 116

Query: 108 QREILS---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +L+   Q  + +   E +     E    + IV  +  MI    V++  G
Sbjct: 117 VDALLNRLKQLGVTIRTNEKIKSVIYEDGQAAGIVTNNGEMIHSQAVIIAVG 168


>gi|207111185|ref|ZP_03245347.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 50

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDN 441
                   R ++YIGV+IDDL +KG  EPYRMFTSRAEYR+ LR DN
Sbjct: 1   NQAPFILKRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDN 47


>gi|317059039|ref|ZP_07923524.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_5R]
 gi|313684715|gb|EFS21550.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_5R]
          Length = 431

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L    G   D      ++ +  +  +    R+  D+ 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDGSF-DIGFGSKKLSSTNENASYTVLRSVFDQW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELIMEDGKVVGV-SATGEELYADVVILADG 162


>gi|257466365|ref|ZP_05630676.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917521|ref|ZP_07913761.1| electron transfer flavoprotein-quinone oxidoreductase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691396|gb|EFS28231.1| electron transfer flavoprotein-quinone oxidoreductase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 431

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L    G   D      ++ +  +  +    R+  D+ 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDGSF-DIGFGSKKLSSTNENASYTVLRSVFDQW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELIMEDGKVVGV-SATGEELYADVVILADG 162


>gi|257452498|ref|ZP_05617797.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 17  MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 74

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L    G   D      ++ +  +  +    R+  D+ 
Sbjct: 75  ---IPNFAEEAPIERKITREKISLMSEDGSF-DIGFGSKKLSSTNENASYTVLRSVFDQW 130

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 131 LASKAEEAGAEIIPGIL-----VDELIMEDGKVVGV-SATGEELYADVVILADG 178


>gi|302339566|ref|YP_003804772.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636751|gb|ADK82178.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
          Length = 489

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-- 58
           ++++ YDVIV GGG +G  AA  +A+ GAST LI  +   +G   C     G    HL  
Sbjct: 7   IVDKKYDVIVCGGGTSGVAAAIASARGGASTLLIE-RVGALGGQLCFSGPPGFAFAHLFN 65

Query: 59  -VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-----------TQADRELYRLA 106
              E DA  G++  +        R+L  K+G A+   +           +  D + + L 
Sbjct: 66  PKGEQDAA-GIIQEI------HTRML--KEGHALPHLKPEHRLEGGYTFSYIDPDWFALT 116

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIV---MQDNSMIRCSTVVLTTGT 156
           +   +  +    ++   V     + N ++ +         +I+ + ++  TG 
Sbjct: 117 IFEMMEEEGVELLLHSLVVDVVQDGNKVTGVEVENTNGTMIIQGNIIIDCTGE 169


>gi|70933619|ref|XP_738157.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56514141|emb|CAH84030.1| hypothetical protein PC300822.00.0 [Plasmodium chabaudi chabaudi]
          Length = 53

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLN 621
           P LSNE  EKL+  +P NL +A+KIEG+T + +  L  YI K   K  
Sbjct: 5   PYLSNEEIEKLNKFRPSNLDEANKIEGVTMSGIYYLYHYIMKEKKKTK 52


>gi|254519330|ref|ZP_05131386.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium sp.
           7_2_43FAA]
 gi|226913079|gb|EEH98280.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium sp.
           7_2_43FAA]
          Length = 403

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 136/398 (34%), Gaps = 66/398 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REIDAL 65
           VIV+G G AG  A+  A+K    T            +     + G G+ ++   R+I+  
Sbjct: 4   VIVVGAGPAGIMASLSASKNNEVTL-----IERNSEIGKKLKLTGGGRCNITNNRDIEEF 58

Query: 66  DGLMGRVADAAGIQFRVLNVK-------------KGPAVRGPRTQADRELYRLAMQREIL 112
              +              +               K    +   T++D+    + + +  L
Sbjct: 59  FDKIVTNKKFLYSALYTFSNTTLLEYFSNNNLEYKVEYDQKVFTKSDKADEVIEIFKRDL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG------TFLRGVIHIG 165
            + ++ V+    V  F  E  II  I+ +D   I   +V++TTG      T   G ++  
Sbjct: 119 MKNDVKVLYNTKVNDFIIEDEIIKGIITEDGKKIYADSVIVTTGGKSYPTTGSDGSMYDI 178

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             K   G   ++   +L     K  F            +   TI   K ++Q  D     
Sbjct: 179 LQK--HGHTINTLYPALIPLVTKEGFIKNLQGISMKEVIISTTIKKKKIQRQ-GDMIFTH 235

Query: 226 F-----------SFMTDKITNRQIECGITRTNL----ETHRIIMENIKHSAIYSGDIKSY 270
           F           S++   +  +++E  +         E   II  N   S + +  +K+Y
Sbjct: 236 FGISGPGVLKFSSYINKILKEKEVEIKLDFLPEISKNELSEIIRSNSNKSLLNN--LKAY 293

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
            P+        I+   E    +  L+ E     + Y   +   + + I            
Sbjct: 294 LPQNFVKEILNILSLSEVKIAE--LKKEDELKLIEYIKEMPLTVEDTITI---------- 341

Query: 331 KVNIIRPGYAIEYDYINPKELF-PTLETKKISGLFLAG 367
           K  ++  G       ++ KE+   T+E+KKI  LF AG
Sbjct: 342 KAAMVTSGG------VSVKEINSSTMESKKIKNLFFAG 373


>gi|315639558|ref|ZP_07894700.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus italicus
           DSM 15952]
 gi|315484708|gb|EFU75162.1| pyridine nucleotide-disulfide oxidoreductase [Enterococcus italicus
           DSM 15952]
          Length = 429

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 21/170 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV-- 59
           +N  YDVIV+GGG +G  A+  AA+ GA   L                + G G+ ++   
Sbjct: 9   MNTKYDVIVVGGGTSGMMASIAAAEQGAKVVL----IDKNKKYGKKLLMTGGGRCNVTNN 64

Query: 60  REIDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILS 113
           RE+D L   +   GR   +   QF   +V       G   + +   R        + I+ 
Sbjct: 65  REVDDLIRHIPGNGRFLYSTFSQFNNFDVMDFFESHGVSLKEEDHGRMFPVTNKSKTIVD 124

Query: 114 QENLDVIQ--------GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                  Q          V     + + I+ +  +    I+   V+LTTG
Sbjct: 125 TLVETATQLGVTLLPNTTVKSLLFDADHITGVKTEF-ETIQAPCVILTTG 173


>gi|307690215|ref|ZP_07632661.1| glucose-inhibited division protein A [Clostridium cellulovorans
           743B]
          Length = 161

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%)

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGL 363
           +ST  P E     +R IPGLE      P YA      I Y  ++P+     +  + +  L
Sbjct: 1   MSTYYPLEK----LRKIPGLEFAKYADP-YAGGIGNSIRYLAVSPR--TNDMRVRGLDNL 53

Query: 364 FLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDD 414
           F+AG+ +G   G+ EA A G +AG N+ R    +  +    + + IG +I  
Sbjct: 54  FVAGEKSGLFVGHIEAMATGSLAGYNAVRYGIGMPPLTLPISTA-IGDIISY 104


>gi|307690231|ref|ZP_07632677.1| glucose-inhibited division protein A [Clostridium cellulovorans
           743B]
          Length = 161

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R IPGLE      P YA      I Y  ++P+     +  + +  LF+AG
Sbjct: 1   MTTYYPLEKLRKIPGLEFAKFADP-YAGGVGNSIRYLAVSPR--TNDMRVRGLDNLFVAG 57

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRM 426
           + +G   G+ EA A G +AG N+ R    +  +    + + IG MI         E YR+
Sbjct: 58  EKSGLFVGHIEAMATGSLAGYNAVRYGIGMPLLTLPISTA-IGDMISY-------ENYRV 109

Query: 427 FTSRA-EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLL 478
            T    + R +        R+  +G+    + +   KR  +     +  +  L
Sbjct: 110 STIDGRKNRYTFSGAEYFARMKSLGLY--SLDDEEIKRRVEKNNLTDIFKIKL 160


>gi|294784832|ref|ZP_06750120.1| ABC transporter, ATP-binding protein [Fusobacterium sp. 3_1_27]
 gi|294486546|gb|EFG33908.1| ABC transporter, ATP-binding protein [Fusobacterium sp. 3_1_27]
          Length = 431

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L        D      ++ +  +  +    R+  DR 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDSSF-DIGFGSKKLSSNNENASYTVLRSTFDRW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELILEDGKVVGV-SATGEELYADVVILADG 162


>gi|34762287|ref|ZP_00143292.1| Probable electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|237742645|ref|ZP_04573126.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 4_1_13]
 gi|256846039|ref|ZP_05551497.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_36A2]
 gi|27888073|gb|EAA25135.1| Probable electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|229430293|gb|EEO40505.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 4_1_13]
 gi|256719598|gb|EEU33153.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Fusobacterium sp. 3_1_36A2]
          Length = 431

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 31/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AGC AA V A  G +                   L  H    I  
Sbjct: 1   MSEEKFDAIIVGGGLAGCSAAIVLANAGLAVLVVERGDFCGAKNMTGGRLYGHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  + RE  +L        D      ++ +  +  +    R+  DR 
Sbjct: 59  ---IPNFAEEAPIERKITREKISLMSEDSSF-DIGFGSKKLSSNNENASYTVLRSTFDRW 114

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L   A +        +      V     E   +  +       +    V+L  G
Sbjct: 115 LASKAEEAGAEIIPGIL-----VDELILEDGKVVGV-SATGEELYADVVILADG 162


>gi|158320598|ref|YP_001513105.1| hypothetical protein Clos_1566 [Alkaliphilus oremlandii OhILAs]
 gi|158140797|gb|ABW19109.1| HI0933 family protein [Alkaliphilus oremlandii OhILAs]
          Length = 409

 Score = 61.1 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-----EI 62
           VIVIG G AG  A   AA+      +I      IG       I G G+ +L       E+
Sbjct: 5   VIVIGAGPAGIMAGITAARQNKEVIVIEKN-DQIG---KKLRITGGGRCNLTNACSISEM 60

Query: 63  DALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRTQ-----ADRELYRLAMQREIL 112
                  G+    +   F  +++       G  V+          +DR    + +   +L
Sbjct: 61  IEKTLCNGKFLYPSFNAFSNMDLIHFVESNGCKVKIESKGKVFPLSDRSQDIIDLFLRVL 120

Query: 113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +Q N  V  Q EV    T +N I  + ++D  ++ C +V++ TG
Sbjct: 121 NQYNAVVRTQHEVKDILTSENTIVGVQLRDGLVLECDSVIIATG 164


>gi|210622297|ref|ZP_03293066.1| hypothetical protein CLOHIR_01014 [Clostridium hiranonis DSM 13275]
 gi|210154285|gb|EEA85291.1| hypothetical protein CLOHIR_01014 [Clostridium hiranonis DSM 13275]
          Length = 408

 Score = 61.1 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 151/428 (35%), Gaps = 85/428 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VREI 62
           V++IG G AG  AA  A++ G    L+      +G       I G G+ ++     V E+
Sbjct: 4   VVIIGAGPAGMTAAYSASQNGIDVVLVEKN-ERVG---RKLLITGKGRCNITNNCEVEEL 59

Query: 63  DALDGLMGRVA---------DAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREI 111
            A     G+           DA    F  L V +    RG R   ++DR +  +     +
Sbjct: 60  IANVNTNGKFLYSAFYTFTNDAVMEMFESLGV-RLKTERGNRVFPESDRAMDVVDAMARL 118

Query: 112 LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + ++N+ ++ G  V     +   + S+V+ D   I+   V++ TG               
Sbjct: 119 IKRKNIKLVTGKTVKDIKEKNGKVESVVLSDGKEIKTDAVIIATG---GASYQRTGSTGD 175

Query: 171 AGRMGDSPSNSLF---NSFMKFDFDTGRLK--TGTPARLDGKTIIWDKTEKQFADERLIP 225
             R+ +   + +     S +  +     +    G   R     +   K +K + D   + 
Sbjct: 176 GYRLAEKLGHKITPLKPSLIGLEIQEDFVHKLKGLSLRNVAIKVFGKKNKKIYDDFGEME 235

Query: 226 FSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           F+    D    +   C           I+ +  K S   S D+K         ++ ++ R
Sbjct: 236 FTDYGVDGPIIKSASC-----------IMRDLSKESYKISLDLKP--ALDHEKLDKRVQR 282

Query: 285 FGERNGHQIFLEPEGLNTDV---------VYPNGIS-----TALPEEIQHQFIRTIPGLE 330
             ++    I    E   +D+         V  +GI       ++ +E +   + TI  +E
Sbjct: 283 DFQKY---INKRFENSLSDLLPSKMIPVVVELSGIDPATPVNSITKEERRNLVDTIKNIE 339

Query: 331 -KVNIIRPGYAIEYDYINPKELF------PTLETKKISGLFLAG--------------QI 369
             V   RP   +E   +    +        T+E+K I GL+ AG              QI
Sbjct: 340 LHVKRYRP---MEEAIVTSGGVKTSEINSSTMESKLIEGLYFAGEVIDVDAYTGGFNLQI 396

Query: 370 NGTTGYEE 377
             +TGY  
Sbjct: 397 AFSTGYLA 404


>gi|213612576|ref|ZP_03370402.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Salmonella enterica subsp. enterica serovar Typhi str.
          E98-2068]
          Length = 45

 Score = 61.1 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 1  MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          M  +  +DVI+IGGGHAG EAA  AA++G  T L+TH   T+G M
Sbjct: 1  MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM 45


>gi|147677977|ref|YP_001212192.1| hypothetical protein PTH_1642 [Pelotomaculum thermopropionicum SI]
 gi|146274074|dbj|BAF59823.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
          Length = 425

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 17/156 (10%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +RT+ G +      P     G +I +  I P     TL  + +  LF AG+
Sbjct: 265 MTPFFPLEVLRTLDGFQHARYADPYSGGKGNSIRFMAIAP--CDDTLRVQGVDNLFCAGE 322

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
             G   G+ EA A G +AG N+ R     + +   R  +  G +I  +  + + +P    
Sbjct: 323 KTGLLVGHTEAIATGFLAGHNAVRLLTGKELLVLPRELA-CGDIISYM-HEEMRKP---- 376

Query: 428 TSRAEYRISLRPDNADN-RLTPIGMKLGCIGERRQK 462
                 R      +    R+  +G+    + E R++
Sbjct: 377 --EGLARKYTFSGSVYFQRMQELGLYTTDVSEIRKR 410


>gi|164662461|ref|XP_001732352.1| hypothetical protein MGL_0127 [Malassezia globosa CBS 7966]
 gi|159106255|gb|EDP45138.1| hypothetical protein MGL_0127 [Malassezia globosa CBS 7966]
          Length = 564

 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 26/194 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVREI 62
           YDVI++G G  G   A   A+ G    ++         I  +      GG+    L+   
Sbjct: 24  YDVILVGAGIVGSALATSLARAGRRVLVLERDMSEPDRI--VGELLQPGGVRALQLLGLE 81

Query: 63  DALDGLMGRVADAAGI-------------QFRVLNVKKGPA-VRGPRTQ-ADRELYR--- 104
           DALDG+    A+   I                 L  + G +   GP    A R  +    
Sbjct: 82  DALDGIDAVPAEGYDIFLSPREHVKIQYPHMAELPTRYGRSEPLGPDMHYAGRSFHHGRF 141

Query: 105 -LAMQREILSQENLDVIQGEVAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            +A++  + +Q N+ V++  V     +     +  +    + +      ++  G F +  
Sbjct: 142 IMALRSRMQAQPNVSVVEAAVTSLVHDPRDRRVVGVRTATSDVYHAPVTIVADGIFSKFR 201

Query: 162 IHIGKLKIPAGRMG 175
              G    P  R  
Sbjct: 202 KEYGGAYKPEIRSH 215


>gi|307103398|gb|EFN51658.1| hypothetical protein CHLNCDRAFT_59147 [Chlorella variabilis]
          Length = 1070

 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 59/176 (33%), Gaps = 21/176 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI------THKTSTIGSM--------SCNPAIGGL 53
           V+V+G G AG  AA   A+ G    L+        +   IG++          N   G  
Sbjct: 521 VVVVGCGPAGLWAALQMAEAGIKVVLLERGQPVEVRGKDIGALFVRRRVNPESNLCYGEG 580

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP----AVRGPRTQADRELYRLAMQR 109
           G G        L   +GR +D        L     P        P    DR +  L   R
Sbjct: 581 GAG--TWSDGKLTTRIGRNSDPVRAVLNTLYRFGAPESVLVSGKPHLGTDRLVRVLKAFR 638

Query: 110 EILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
           E L     +V  G  V         ++ + + D S I  S VVL  G   R +  +
Sbjct: 639 EYLISLGCEVRFGCRVEDLVVRSGRVAGVQLADGSTIAASKVVLAPGHSARDLYRM 694


>gi|303241885|ref|ZP_07328379.1| HI0933 family protein [Acetivibrio cellulolyticus CD2]
 gi|302590559|gb|EFL60313.1| HI0933 family protein [Acetivibrio cellulolyticus CD2]
          Length = 409

 Score = 60.7 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 149/432 (34%), Gaps = 77/432 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG AG  AA  AA+LG    L+      +G       I G G+ ++    D    
Sbjct: 5   VVVIGGGPAGILAAGKAAELGNDVTLVEKN-DRLG---KKILISGKGRCNITNNTDIEGL 60

Query: 68  LM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----------RLAMQREI 111
           +      G    +A   F   ++ +     G  T+ +R                 + + +
Sbjct: 61  IENIPGNGNFLYSAFYTFSNTDLIEFLHNYGLETKVERGGRVFPVSDRAKDVVDTLSKYL 120

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                  ++  +V    T    +  +++++   I C +VVL TG              P 
Sbjct: 121 KDTSVNILLNSQVTEIITNDGAVKGVLLKNGRKIDCDSVVLATG----------GSSYPG 170

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD 231
                  +   +    K   +  +L+      +  +       E Q    + +  + + +
Sbjct: 171 ----TGSTGDGYKIAKKVGHEIIKLRPSLVPLVVMEKW---IGELQGLSLKNVSATLLNE 223

Query: 232 ---KITNRQIECGITRTNLETHRIIMENIKHSAIYSGD-----IKSYGPRYCPSIEDKIV 283
              KI +   E   T   +    II+ + +H   Y        I          ++++I 
Sbjct: 224 KGKKIYSDFGEMLFTHYGVSGP-IILSSSRHILDYDFKGVSLVIDLKPALTEEKLDERIQ 282

Query: 284 RFGERNGHQIFLE-----------PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE-- 330
           R  E+   + F             P  LN   + P+     + +E +   +R +  L+  
Sbjct: 283 RDFEKYSRKQFKNSLDELLPQKLIPVVLNLSEISPDKFVNQITKEERRNLVRVLKNLKLT 342

Query: 331 -------KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------ 377
                     I+  G  I  + INP     T+E+K I GLFLAG++     Y        
Sbjct: 343 ICGSRPIDEAIVTAG-GISTNEINP----STMESKLIKGLFLAGEVIDVDAYTGGFNLTI 397

Query: 378 AAAQGLVAGINS 389
           A + G +AG+N 
Sbjct: 398 AFSTGYLAGMNC 409


>gi|212637621|ref|YP_002314146.1| dehydrogenase [Shewanella piezotolerans WP3]
 gi|212559105|gb|ACJ31559.1| Dehydrogenase (flavoproteins) [Shewanella piezotolerans WP3]
          Length = 429

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   S+D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MSEESFDAIIVGAGLAGCIAAYVLAKEGADVLV----IERGNYAGSKNMTGGRLYSHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D  G+     N +K  AV       R + D+ L  
Sbjct: 57  RIIPGFAKEAPIERKVTKEKVTFLTDDTGVTLDYHNGRKQTAVEESYTLLRGEFDQWLMD 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E+ +Q    +    V    T    +  +   D   +   +V+L  G
Sbjct: 117 KA--EEVGAQ---FISGIRVDEVLTRDGKVIGVK-ADGDELAAKSVILAEG 161


>gi|291485439|dbj|BAI86514.1| hypothetical protein BSNT_04378 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 428

 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL- 58
           MI  + YDVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++ 
Sbjct: 6   MIKMKQYDVIVIGGGPSGLMAAIAAGEQGAGVLL----IDKGNKLGRKLAISGGGRCNVT 61

Query: 59  ----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAM 107
               V EI       GR   +A  +F   ++ K     G + + +             ++
Sbjct: 62  NRLPVEEIIKHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSV 121

Query: 108 QREILS---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +L+   Q  + +   E +     E    + IV  +  MI    V++  G
Sbjct: 122 VDALLNRLKQLRVTIRTNEKIKSVIYEDGQAAGIVTNNGEMIHSQAVIIAVG 173


>gi|226313734|ref|YP_002773628.1| hypothetical protein BBR47_41470 [Brevibacillus brevis NBRC 100599]
 gi|226096682|dbj|BAH45124.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 433

 Score = 60.3 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 75/444 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REI 62
            YDVI+IGGG +G  +A  A+  GA   L+         +     I G G+ ++   +E 
Sbjct: 7   KYDVIIIGGGPSGLMSAIAASGQGARVCLV----EKGSKLGRKLIISGGGRCNVTNAKEQ 62

Query: 63  DALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQR 109
           D L   M   GR   +A  QF    + +     G   +           D+ +       
Sbjct: 63  DELIKQMPGNGRFMYSALTQFGNREIIQFFEELGVALKEEDRGRMFPVTDKAVTVAQALI 122

Query: 110 EILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGTFLRG 160
           ++L Q  + + +   V      +  +  I++Q    I    V++         TG+   G
Sbjct: 123 DLLKQRGVSIHLNAAVKEVLYSEGRVGGIMLQSGEKITAPCVIIAVGGCSVPQTGSTGDG 182

Query: 161 VI------HIGKLKIPAG-RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
                   H      P    +  + S     S          +    P   +GK I    
Sbjct: 183 YAWAKAAGHTITELYPTEVPLTANDSFIRDKSIQGLSLRDITMTLYAP---NGKKIN--- 236

Query: 214 TEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              Q  D     F                   +   +  +  ++    +     +     
Sbjct: 237 --TQEGDMIFTHFGISGPASLRMG---HYVSVSQRKYGAVPLSLTIDLMPDKTAEEITAE 291

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS--TALPEEIQHQFIR------- 324
               IE++  +   +N  + FL PE +   ++   GIS  T      + ++ +       
Sbjct: 292 SWQLIEEQPKK-AVKNAIKGFL-PERIIPLLLSLAGISDETTYSHMKKQEWSKFTNLIKA 349

Query: 325 ---TIPG---LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING----TTG 374
              TI G   LE+  I   G +++   I+P+    ++ +K + GL+ AG++      T G
Sbjct: 350 FPLTITGTLSLEEAFITGGGVSVKE--IDPR----SMRSKLMDGLYFAGEVMDVHAHTGG 403

Query: 375 YEEAAA--QGLVAGINSARKSNKL 396
           Y    A   G  AG +SA+++ + 
Sbjct: 404 YNITIAFSSGYSAGTHSAQEAFEF 427


>gi|163789423|ref|ZP_02183862.1| hypothetical protein CAT7_01607 [Carnobacterium sp. AT7]
 gi|159875277|gb|EDP69342.1| hypothetical protein CAT7_01607 [Carnobacterium sp. AT7]
          Length = 426

 Score = 60.3 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 152/431 (35%), Gaps = 61/431 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----V 59
            YDV+V+GGG +G  AA  AA+ GA  A+I   T    ++     + G G+ ++      
Sbjct: 6   KYDVLVVGGGTSGMMAAISAAEHGAKVAVIEKNT----TLGRKLLVTGGGRCNVTNNRDK 61

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQR 109
            EI A     GR   +A  Q+   ++       G   +           D+    L    
Sbjct: 62  EEIIAHIPGNGRFLYSAFHQYDNYDIMDFFRSNGVVLKEEDHGRMFPITDKSRTILEALI 121

Query: 110 EILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHI 164
            I+ +  + +     V      +   + ++++D   I  S V+++TG             
Sbjct: 122 GIMDRLKIAIYTDAPVDTLLFNEGKATGVLLEDGRSIHASCVIVSTGGRAMPRTGSTGDG 181

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA----D 220
            K    AG   +    +         F   +   G   R    ++  +K  KQ      D
Sbjct: 182 YKWAKKAGHTINPLYPTEAPILSDEGFIQDKTLQGLSLRDIALSV-LNKKGKQVITHQMD 240

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD--------IKSYGP 272
                F      +    +    T    ++  ++M       +  G+        IK+ G 
Sbjct: 241 MIFTHFGISGPAVLRCSMFVHQTMKRDKSEEVVMSLDALPNVSKGELTQQLQQLIKNDGD 300

Query: 273 RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332
           +   +    +V   ER      +   GL+ +          L +    +  + I  ++  
Sbjct: 301 KSTKNALKGLV--PERYLLFALVRA-GLDENA--------PLKQVPPEKITQFIEFIKDF 349

Query: 333 NIIRPGYA-IEYDY-----INPKELFP-TLETKKISGLFLAGQI---NGTTG---YEEAA 379
                G   IE  +     IN KE+ P T+E+K  +GLF  G+I   NG TG      A 
Sbjct: 350 RFTANGTLPIEKAFVTGGGINTKEVNPKTMESKFTNGLFFTGEILDYNGYTGGYNITGAF 409

Query: 380 AQGLVAGINSA 390
             G +AG+++A
Sbjct: 410 ITGRIAGMHAA 420


>gi|304405290|ref|ZP_07386950.1| HI0933 family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346169|gb|EFM12003.1| HI0933 family protein [Paenibacillus curdlanolyticus YK9]
          Length = 424

 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIVIGGG AG  A+  A+K GAS  L          +     I G G+ ++    D 
Sbjct: 2   NYDVIVIGGGSAGLMASIAASKRGASVLL----LDKGDKLGRKLGISGGGRCNVTNNKDM 57

Query: 65  LDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREIL 112
            + +      GR   +A   F   ++       G R + +              +   ++
Sbjct: 58  DELIKHIPGNGRFLHSALNSFGNKDIIAFFEGLGIRLKEEDNGRMFPVTDKAKTVVDALV 117

Query: 113 SQ---ENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +Q   + + + +   VA        ++ + ++        +V++ +G
Sbjct: 118 NQVVKQGVTIKVNAPVAEVLFASGAVAGVRLRSGERYVGKSVIIASG 164


>gi|309805707|ref|ZP_07699747.1| tRNA (uracil-5-)-methyltransferase Gid domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308164960|gb|EFO67203.1| tRNA (uracil-5-)-methyltransferase Gid domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 98

 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 369 INGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFT 428
           + G  GY E+A  GLVAGIN++ ++     I F + ++ IG M + +TS           
Sbjct: 1   MTGVEGYVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITSTSA-------- 51

Query: 429 SRAEYRISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                  + +P NA   L P +  K+    ER   +    + E N  ++ 
Sbjct: 52  ------KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELNEFKNK 95


>gi|306829173|ref|ZP_07462363.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus mitis
           ATCC 6249]
 gi|304428259|gb|EFM31349.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus mitis
           ATCC 6249]
          Length = 391

 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 135/423 (31%), Gaps = 78/423 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFHGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKIDDQFVLKSADQTFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +   + Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKDLQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S+ D +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPQLSV-DDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E+ + Q +++I  L+        
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGFPEKVKQLTEKEREQLLQSIKALKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAG 386
           VAG
Sbjct: 384 VAG 386


>gi|223938560|ref|ZP_03630452.1| FAD dependent oxidoreductase [bacterium Ellin514]
 gi|223892822|gb|EEF59291.1| FAD dependent oxidoreductase [bacterium Ellin514]
          Length = 784

 Score = 60.3 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 129/403 (32%), Gaps = 88/403 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++V+GGG++G  AA  AA+ G   ALI               +GG G      EI  
Sbjct: 184 SYDLVVVGGGYSGMGAAISAARQGLKVALIQ---DRF-------VLGGNGSS----EIRV 229

Query: 65  L--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLD--- 118
               G M       G    +  + +  A   P   AD   +   ++  +  +E NL    
Sbjct: 230 WANGGTM------RGKYPHLGEIIEEFADHAPDCPADPAEFGADVKEAVCRREKNLSLFL 283

Query: 119 ---VIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI-PAG 172
              V Q E+   +     +++  +        R    V  TG    G     K  + P G
Sbjct: 284 GHFVRQAEMDRSSGRILSVTALDVRTGHERRFRGKFFVDCTGHGELGAQAGAKYSMEPKG 343

Query: 173 RM---------GDSPSNSLFNSFMKFDFDTGRL--KTGTPARLDGKTIIWDKTEKQFA-D 220
           RM          +  + S   +      + G       + + +DGK  +  +   +   D
Sbjct: 344 RMGMSNLWFWQDEKTAQSWPETPWALPLELGDFPNPKKSQSMIDGKPFMKGEWFWESGFD 403

Query: 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY----GPRYCP 276
           +  I  + M      R I              + +  + +   +  +K      GPR   
Sbjct: 404 KDPIQGAEMIRDWNLRAI--------FGAFSALKQGPEKAKHANSALKWVAYVGGPRESR 455

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNG-------ISTALPEEIQHQFIRTIPGL 329
            +E  +V           L  E +     YP+G       I    P+E+  +     P +
Sbjct: 456 LLEGDVV-----------LSREDIVDGREYPDGCVPTTWDIDLHYPKELYAKKFADNPFI 504

Query: 330 EKVNI-----IRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            +         R GY + Y                +  LF+AG
Sbjct: 505 SRAEFGAGVDKRSGYPVPYRCFYST---------NVPNLFMAG 538


>gi|108805729|ref|YP_645666.1| monooxygenase, FAD-binding protein [Rubrobacter xylanophilus DSM
           9941]
 gi|108766972|gb|ABG05854.1| monooxygenase, FAD-binding protein [Rubrobacter xylanophilus DSM
           9941]
          Length = 436

 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 73/212 (34%), Gaps = 33/212 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS--------MSCN-PAIG 51
           M   +YDV V+G   AGC AA + A+ GA  ALI                   C  P I 
Sbjct: 13  MSREAYDVAVVGASIAGCTAATLFAREGARVALIERHADPNAYKALCTHYIQPCAVPTIE 72

Query: 52  GLGKGHLVREIDAL-DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            LG   L+ E   + +GL+                  G A   P     R      M R 
Sbjct: 73  RLGLAPLIEEAGGIRNGLVMYTRW---------GWIGGDAEDLPYGYNIRRQTLDPMLRG 123

Query: 111 I-LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS----MIRCSTVVLTTGTFLRGVIHI 164
           +  S   ++ + G        E   ++ +V++D +     I    VV   G   R     
Sbjct: 124 LAASTPGVEFMPGRSARDLIREDGRVAGVVVRDRAGESHEIPARLVVAADGRSSR----- 178

Query: 165 GKLKIPAGRMGDSPSN--SLFNSFMKFDFDTG 194
              KI  G +  +P+N  + F  +      +G
Sbjct: 179 -IAKIAGGPVEVAPNNRFAYFAHYRDLTLPSG 209


>gi|300855031|ref|YP_003780015.1| hypothetical protein CLJU_c18510 [Clostridium ljungdahlii DSM
           13528]
 gi|300435146|gb|ADK14913.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 306

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 30/178 (16%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +R I GLE V  I P     G +I Y  I P  +   L+   I  LF  G+
Sbjct: 146 MTSYYPLEKLRKIQGLENVKFIDPYSGGKGNSIRYLSIAPVSVD--LKVNGIDNLFCGGE 203

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
            +G   G+ EA   G +AG N+ + +  +  +    T++ IG +I   TSK   +  R  
Sbjct: 204 KSGLFVGHTEAICTGSLAGHNAVKCALNIPTLTLP-TNTAIGDIISYATSKIHTKEGR-- 260

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTS 485
               + R +       NR+       G     R             +++ +K+  L++
Sbjct: 261 ----KNRYTFAGAEFFNRMKEK----GLYSIDR-----------EEIQNRIKNTGLSN 299


>gi|169836599|ref|ZP_02869787.1| hypothetical protein cdivTM_05765 [candidate division TM7
          single-cell isolate TM7a]
          Length = 33

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          R+YDVIV+G GHAG EAA  +A+LG  
Sbjct: 2  RNYDVIVVGAGHAGNEAALASARLGLK 28


>gi|91772422|ref|YP_565114.1| geranylgeranyl reductase [Methanococcoides burtonii DSM 6242]
 gi|121684490|sp|Q12YW2|GGR1_METBU RecName: Full=Digeranylgeranylglycerophospholipid reductase 1;
           Short=DGGGPL reductase 1; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate reductase
           1; AltName: Full=Geranylgeranyl reductase 1; Short=GGR 1
 gi|91711437|gb|ABE51364.1| Oxidoreductase with FAD-binding domain [Methanococcoides burtonii
           DSM 6242]
          Length = 408

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD++V+G G AG  AA  AAK G S  ++  +      + C   +G       +  
Sbjct: 1   MKDQYDLVVVGAGPAGSIAATTAAKKGLSVLMLEKRQEIGEPVRCAEGVGKKRLRQHIEL 60

Query: 62  IDALDGLMGRV--ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +    L G V  A         L + +  A        DR+++   +  E+  +  +D+
Sbjct: 61  DEKW--LCGEVSSAKIISPNGTTLTMAEEDAGSEVGYVLDRKIFDRTLV-ELSGEAGVDI 117

Query: 120 -IQGEVAGFNTEKNIISSIV-MQDNSMI--RCSTVVLTTG 155
            ++  V G   E+N +  +  M        R   V+   G
Sbjct: 118 MVKARVTGLIIEENTVCGVEMMHLGKTYSIRSKLVIGADG 157


>gi|255656667|ref|ZP_05402076.1| putative lipoprotein [Clostridium difficile QCD-23m63]
 gi|296449877|ref|ZP_06891641.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium difficile
           NAP08]
 gi|296878258|ref|ZP_06902267.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium difficile
           NAP07]
 gi|296261147|gb|EFH07978.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium difficile
           NAP08]
 gi|296430706|gb|EFH16544.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium difficile
           NAP07]
          Length = 408

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 147/427 (34%), Gaps = 83/427 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V++IGGG AG  AA+ A + G    L+         +    AI G G+ ++         
Sbjct: 4   VVIIGGGPAGMIAASTACERGCDVTLV----EKNHKLGKKLAITGKGRCNITNACEIEEL 59

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRT--QADREL-YRLAMQREI 111
            E    +G     A        V+++      K    RG R   ++D+      A++R++
Sbjct: 60  IENVPTNGKFLYSAFYTFTNEDVISMFNNLGVKTKTERGKRVFPESDKAFDIVNALERQL 119

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKL 167
            S++   ++  +V    ++ N I  +++ +   I+C +VV+ TG     +        K 
Sbjct: 120 KSKKVNILLNSKVEKIISKNNKIEKVILNNKKEIKCDSVVVATGGLSYPLTGSTGDGYKF 179

Query: 168 KIPAGRMGDSPSNSL---------FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
            I  G        SL              K       ++               K +K +
Sbjct: 180 AISQGHTIMDTKPSLIGIEVQESFTRDLEKLSLRNVEIRVFN-----------SKQKKVY 228

Query: 219 ADERLIPF-SFMTDKITNRQIECGITRTNLETHRII------MENIKHSAIYSGDIKSYG 271
           +D   + F  F  D    +   C +  T  E + II      ++  K       D + Y 
Sbjct: 229 SDFGELEFTKFGLDGPIIKSASCRMKDTRKENYTIILDLKPALDEEKLDKRIQKDFQKYT 288

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE- 330
            +      D +    ++        P  +N   + P+ +   +  E +   +  +  L+ 
Sbjct: 289 NKKFEKALDDL--LPKKLI------PVIVNLSEINPDTVVHQISREQRKNLVHLLKNLKF 340

Query: 331 KVNIIRPGYAIEYDYINPKELF------PTLETKKISGLFLAG--------------QIN 370
            V   RP   I+   I    +        T+E+K + GLF AG              QI 
Sbjct: 341 TVKRYRP---IDEAIITSGGVKVNEINSSTMESKLVEGLFFAGEVIDIDAYTGGFNLQIA 397

Query: 371 GTTGYEE 377
            +TGY  
Sbjct: 398 FSTGYLA 404


>gi|221310946|ref|ZP_03592793.1| YtfP [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315273|ref|ZP_03597078.1| YtfP [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320190|ref|ZP_03601484.1| YtfP [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324472|ref|ZP_03605766.1| YtfP [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 428

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL- 58
           MI  + YDVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++ 
Sbjct: 6   MIKMKQYDVIVIGGGPSGLMAAIAAGEQGAGVLL----IDKGNKLGRKLAISGGGRCNVT 61

Query: 59  ----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAM 107
               V EI       GR   +A  +F   ++ K     G + + +             ++
Sbjct: 62  NRLPVEEIIKHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSV 121

Query: 108 QREILS---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +L+   Q  + +   E +     E    + IV  +  MI    V++  G
Sbjct: 122 VDALLNRLKQLRVTIRTNEKIKSVLYEDGQAAGIVTNNGEMIHSQAVIIAVG 173


>gi|157963852|ref|YP_001503886.1| FAD dependent oxidoreductase [Shewanella pealeana ATCC 700345]
 gi|157848852|gb|ABV89351.1| FAD dependent oxidoreductase [Shewanella pealeana ATCC 700345]
          Length = 429

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   S+D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MSEESFDAIIVGAGLAGCVAAYVLAKEGADVLV----IERGNYAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG--PRTQADRELYRLA 106
                       E       +  + D  G+     N +   AV       + D + + + 
Sbjct: 57  KIIPGFAKEAPIERKVTKEKVTFLTDDTGVTLDYHNGRDQTAVEESYTLLRGDFDQWLMG 116

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              E+ +Q    +    V    T+   +  +   D   +   +V+L  G
Sbjct: 117 KAEEVGAQFITGIR---VEEILTQDGKVIGVK-ADGDELTAKSVILAEG 161


>gi|294620280|ref|ZP_06699600.1| conserved hypothetical protein [Enterococcus faecium E1679]
 gi|291593470|gb|EFF25024.1| conserved hypothetical protein [Enterococcus faecium E1679]
          Length = 417

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   L                + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLL----IEKTKKQGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G+   +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGKFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         ++LTTG
Sbjct: 116 EALLNRLKELDVTLLFSTRVEKLIHKEHKIYGIRTEF-EEFHAPAIILTTG 165



 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 349 KELFP-TLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           KE++P TLE+K I GL+ AG++   NG TG      A A G VAG+N+ ++
Sbjct: 366 KEIYPKTLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGMNAGQR 416


>gi|160931794|ref|ZP_02079187.1| hypothetical protein CLOLEP_00625 [Clostridium leptum DSM 753]
 gi|156869131|gb|EDO62503.1| hypothetical protein CLOLEP_00625 [Clostridium leptum DSM 753]
          Length = 437

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL---ITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            YDV+V GGG AG  AA  AA+ GA T L          + S   +P +G +  G +  E
Sbjct: 12  QYDVVVAGGGPAGVCAAVSAARQGAKTLLIERFGILGGMMTSGHVDPILGNVAPGTMYDE 71

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---- 117
           I                  R+  +  G   +  R   ++ +     +  +L   NL    
Sbjct: 72  I----------------ISRMTQLHPGVEPQITRNGVEQHVDPEEAKILLL---NLVKES 112

Query: 118 ---DVIQGEVAGFNTEKNIISSIVMQDNSMIRC---STVVLTTGT 156
                +Q  V     +++ I  +V+   + +       V+  TG 
Sbjct: 113 GAEYFLQSSVVDVIQDEDEIKGVVISTPTGLAAVYGKCVIDCTGD 157


>gi|260881012|ref|ZP_05403382.2| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
 gi|260850174|gb|EEX70181.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
          Length = 414

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 126/430 (29%), Gaps = 70/430 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           ++VIG G AG  AA  AA+ GA   L       +        I G G+ ++    D    
Sbjct: 4   ILVIGAGPAGMMAAIRAAENGAEVTL----LEKMKRPGRKMMITGKGRCNITNAADVPEI 59

Query: 65  LDGLMGRVADAAGIQFRVLNVK--KGPAVRGPRTQADR--------ELYRLAMQREILSQ 114
           +  + G  A          N         +G   + +R        +  +  +   +   
Sbjct: 60  IRNIHGNGAFLNSSMRAFDNRDVMDFFVEQGVPVKVERGNRVFPVSDKAQDVVDAMVHRL 119

Query: 115 ENLDVI---QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             L V    +  V     ++  ++ +  +  +  +   V+L  G                
Sbjct: 120 HELGVRIELEMPVTDILLQEGRVAGVRTKSGAHYKADAVILAVGGASYPGTGSTGDGYAM 179

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL----DGKTIIWDKTEKQFADERLIPFS 227
            +        L  S +  + +   +K      L            K ++ F +     F 
Sbjct: 180 AKKLSHTIVPLQPSLVPLETEEEWVKDVQGLSLRNVRATLLADGGKVQEMFGEMMFTHFG 239

Query: 228 FMTDKI------------TNRQIECGITRTNLETHRIIMENIKHS-AIYSGDIKSYGPRY 274
                I              + +E  +      T   +   ++     Y       G   
Sbjct: 240 VTGPIILSMSRQAAKCLADGKFVELELNLKPALTPEKLDARVQRDFEQYIRKSLKNGLMD 299

Query: 275 --CPSIEDKIVRF----GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
                + + ++       E+  HQ+  E             +       +     +T P 
Sbjct: 300 LLPHKLIEPVLDCAYLDPEKPVHQVTAE-----ERHRLVETLQ-----HLTLTITKTRP- 348

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY-----EEAA---- 379
           L +  +   G ++    INPK    T+E+K + GL+ AG++     Y      +AA    
Sbjct: 349 LAEAIVTAGGVSVRE--INPK----TMESKLVPGLYFAGEVVDVDAYTGGYNLQAAFSMG 402

Query: 380 -AQGLVAGIN 388
            A G  +  N
Sbjct: 403 NAAGCWSVWN 412


>gi|255767688|ref|NP_390884.2| NAD(FAD) dehydrogenase [Bacillus subtilis subsp. subtilis str. 168]
 gi|281312487|sp|Q795R8|YTFP_BACSU RecName: Full=Uncharacterized protein ytfP
 gi|225185316|emb|CAB14984.2| putative NAD(FAD) dehydrogenase [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 420

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 20/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----- 58
           + YDVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++     
Sbjct: 2   KQYDVIVIGGGPSGLMAAIAAGEQGAGVLL----IDKGNKLGRKLAISGGGRCNVTNRLP 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREI 111
           V EI       GR   +A  +F   ++ K     G + + +             ++   +
Sbjct: 58  VEEIIKHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSVVDAL 117

Query: 112 LS---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L+   Q  + +   E +     E    + IV  +  MI    V++  G
Sbjct: 118 LNRLKQLRVTIRTNEKIKSVLYEDGQAAGIVTNNGEMIHSQAVIIAVG 165


>gi|170289722|ref|YP_001736538.1| FAD dependent oxidoreductase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173802|gb|ACB06855.1| FAD dependent oxidoreductase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 464

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 154/471 (32%), Gaps = 94/471 (19%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            S+DV+V+G G +G  +A    K+   A   +I       G      +IG      +   
Sbjct: 2   ESWDVVVVGAGPSGLFSAIEIKKIVPEAKVLVIEMGKDLEGRRCPLKSIGRCVTCQICDI 61

Query: 62  IDALDG---------------------LMGR-----VADAAGIQFRVLNVKKG------- 88
           +    G                     L+G      + D     F  L   K        
Sbjct: 62  VSGFGGAGTFSDGKLNLTKDVGGDLANLIGEREFWDLLDYVDDSFLKLGAPKEVYGEDQE 121

Query: 89  -------PAVRGPRTQA---DREL-----YRLAMQ-REILSQENLDVIQG-EVAGFNTEK 131
                   A++          R +     YR+ M  R+++ +  +++  G   +   TE 
Sbjct: 122 EVERLRRKALKAGLLLVPFRIRHMGSDGGYRVLMNLRKLVDEMGIEIRFGATASRILTEN 181

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             +S + + +   I    VVL TG  + G +     ++  G   D     L    ++ + 
Sbjct: 182 GRVSGVSLSNGEEIMAKYVVLATGRVMEGWLVSEMRRL--GVKVDGGKVDLG---VRVEV 236

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF------MTDKITNRQIECGITR- 244
               ++  T    + K I +  T     D+++  F        +T+         G++R 
Sbjct: 237 PYEVMREYTDVLYEPKLIYYSDT----FDDKVRVFCVNPRGEVVTESYWGIVTVNGVSRN 292

Query: 245 --TNLETHRIIMENIKHSAIYSGDI-----------KSYGPRYCPSIEDKIVRFGERNGH 291
                 T+  I+   + +A Y   I           +  G +        + R       
Sbjct: 293 DFKTENTNFAILVTTEFTAPYRDTISYALSIAKMANEIAGNQPIVQRLGDLKRGRRSTEA 352

Query: 292 QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YAIE- 342
           ++             P  +S  LP       +  +  +    I+ PG        Y IE 
Sbjct: 353 RLSRSIVKPTLPGSTPGDLSFVLPFRYLKDILEMLRAMN--EIM-PGIYSDHTLLYGIEV 409

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARK 392
             Y    +L P LETK I GL+  G   G + G  +AAA G+  G + AR+
Sbjct: 410 KLYGAKIDLKPNLETKVIEGLYAGGDGAGVSRGLVQAAASGVWIGRDIARR 460


>gi|321312543|ref|YP_004204830.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis BSn5]
 gi|320018817|gb|ADV93803.1| putative NAD(FAD) dehydrogenase [Bacillus subtilis BSn5]
          Length = 428

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 21/172 (12%)

Query: 1   MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL- 58
           MI  + YDVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++ 
Sbjct: 6   MIKMKQYDVIVIGGGPSGLMAAIAAGEQGAGVLL----IDKGNKLGRKLAISGGGRCNVT 61

Query: 59  ----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAM 107
               V EI       GR   +A  +F   ++ K     G + + +             ++
Sbjct: 62  NRLPVEEIIKHIPGNGRFLYSAFSEFNNEDIIKFFENLGIQLKEEDHGRMFPVTDKAQSV 121

Query: 108 QREILS---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +L+   Q  + +   E +     E    + IV  +  MI    V++  G
Sbjct: 122 VDALLNRLKQLRVTIRTNEKIKSVIYEDGQAAGIVTNNGEMILSQAVIIAVG 173


>gi|302389710|ref|YP_003825531.1| glucose-inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
 gi|302200338|gb|ADL07908.1| glucose-inhibited division protein A [Thermosediminibacter oceani
           DSM 16646]
          Length = 432

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISG 362
           G +  +    + + +R I G E      P YA      I Y  + P+     ++ + +  
Sbjct: 261 GYAKLMTPFFKLEELRKIKGFENARFEDP-YAASKGNSIRYMSMAPR--DDFMKVQGVEN 317

Query: 363 LFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS--KG 419
           LF AG+ +G   G+ EA   G++AG N+ RK+ K++ +   R  + IG  I  +    K 
Sbjct: 318 LFCAGEKSGPVVGHTEAICTGILAGHNAVRKALKIEMLKLPRELA-IGDFIAFVNEEVKK 376

Query: 420 VLEPYRMFT 428
               YR +T
Sbjct: 377 PEGLYRRYT 385


>gi|323342420|ref|ZP_08082652.1| thioredoxin-disulfide reductase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463532|gb|EFY08726.1| thioredoxin-disulfide reductase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 311

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 123/419 (29%), Gaps = 138/419 (32%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YDVI+IG G AG  AA  A + G  TA++                          E
Sbjct: 1   MDNNYDVIIIGAGPAGLTAAVYAGRAGLKTAML--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A  G M +  D       V N+       G         +  A        E L    
Sbjct: 35  SEAPGGKMIK-TDLVQNYPGVDNIT------GVDLSMKMFEHSTAY-----GTEYLY--- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-------------GVIHIGKLK 168
           G V G   E      I  +D S  R   V++ TGT  R             G+ +     
Sbjct: 80  GNVNGIVDEG-EFKVIKTEDGSEYRAHVVIVATGTNERTLGFEKDDALLGHGLSYCAVCD 138

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
               R          NS ++      +        +               D+      F
Sbjct: 139 GAFFRDKKVVVIGGGNSALEEAVYLTQFANEVNLVIRRDVFR--------GDDSAQRQVF 190

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
             +KI                  II ++I    I   D K  G           ++F   
Sbjct: 191 NNEKIN-----------------IIKKHIPVDYI-DKDGKLTG-----------MKF--- 218

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG---LEKVNIIRP-GYAIEYD 344
             H    EP  ++TD V+P              +I  IP    L+ +N++   GY I  +
Sbjct: 219 -EHVETGEPLVIDTDGVFP--------------YIGAIPATGFLKDLNVLDNEGYLIVNN 263

Query: 345 YINPKELFPTLETKKISGLFLAG--------QINGTTGYEEAAAQGLVAGINSARKSNK 395
                     LET  I G+F AG        QI        A + G +A  N+      
Sbjct: 264 ---------QLET-AIPGIFGAGDVIQKHLRQI------VTATSDGAIAAQNAFHYIQD 306


>gi|126700303|ref|YP_001089200.1| putative lipoprotein [Clostridium difficile 630]
 gi|255101857|ref|ZP_05330834.1| putative lipoprotein [Clostridium difficile QCD-63q42]
 gi|255307726|ref|ZP_05351897.1| putative lipoprotein [Clostridium difficile ATCC 43255]
 gi|115251740|emb|CAJ69575.1| putative lipoprotein [Clostridium difficile]
          Length = 408

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 147/427 (34%), Gaps = 83/427 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V++IGGG AG  AA+ A + G    L          +    AI G G+ ++         
Sbjct: 4   VVIIGGGPAGMIAASTACEKGYDVTL----IEKNHKLGKKLAITGKGRCNITNACEIEEL 59

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRT--QADREL-YRLAMQREI 111
            E    +G     A        V+++      K    RG R   ++D+      A++R++
Sbjct: 60  IENVPTNGKFLYSAFYTFTNDDVISMFNNLGVKTKTERGKRVFPESDKAFDIVNALERQL 119

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKL 167
            S++   ++  +V    ++ N I  +++ D   I+C +VV+ TG     +        K 
Sbjct: 120 KSKKVNILLNSKVEKIISKNNKIEKVILNDKKEIKCDSVVVATGGLSYPLTGSTGDGYKF 179

Query: 168 KIPAGRMGDSPSNSL---------FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
            I  G        SL              K       ++               K +K +
Sbjct: 180 AISQGHTIIDTKPSLIGIEVQESFTKDLEKLSLRNVEIRVFN-----------SKQKKVY 228

Query: 219 ADERLIPFS-FMTDKITNRQIECGITRTNLETHRII------MENIKHSAIYSGDIKSYG 271
           +D   + F+ F  D    +   C +  T  E + I+      ++  K       D + Y 
Sbjct: 229 SDFGELEFTRFGLDGPIIKSASCRMKDTRKENYTILLDLKPALDEEKLDKRVQKDFQKYT 288

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE- 330
            +      D +    ++        P  +N   + PN +   +  E +   +  +  L+ 
Sbjct: 289 NKKFEKALDDL--LPKKLI------PIIINLSEINPNTVVHQISREQRKNLVHLLKNLKF 340

Query: 331 KVNIIRPGYAIEYDYINPKELF------PTLETKKISGLFLAG--------------QIN 370
            V   RP   IE   I    +        T+E+K + GLF AG              QI 
Sbjct: 341 TVKRYRP---IEEAIITSGGVKVNEINSSTMESKLVEGLFFAGEVIDIDAYTGGFNLQIA 397

Query: 371 GTTGYEE 377
            +TGY  
Sbjct: 398 FSTGYLA 404


>gi|163751281|ref|ZP_02158508.1| FixC protein [Shewanella benthica KT99]
 gi|161328878|gb|EDP99952.1| FixC protein [Shewanella benthica KT99]
          Length = 430

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MSEEAFDAIIVGAGLAGCVAAYVLAKEGADVLV----IERGNFAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-----TQADRELY 103
                       E       +  + D  G+    L+   G A    +      + D + +
Sbjct: 57  KIIPGFAKEAPLERKVTKEKITFLTDDTGV---TLDYHNGRAQTSVQESYTVLRGDFDQW 113

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +    E+ +Q    +    V    T+   +  +   D   +   +V+L  G
Sbjct: 114 LMGKAEEVGAQFITGIR---VDELITKDGKVVGVR-ADGDELMAKSVILAEG 161


>gi|313893379|ref|ZP_07826951.1| flavoprotein family protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442020|gb|EFR60440.1| flavoprotein family protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 415

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-- 65
           +IVIGGG AG  A+ +A + GA   L       +  +     I G G+ ++    D    
Sbjct: 4   IIVIGGGAAGLMASVIAGREGARVIL----LEKMNMVGKKMGITGKGRCNITNSADMAEF 59

Query: 66  ------DGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRT--QADRELYRLAMQREIL 112
                 +G     A        +L++      K    RG R   ++D  L       +IL
Sbjct: 60  IKNTPGNGKFLYGAYERFSNEDLLDLLHSWGLKTKVERGGRVFPESDSALEVRNTFMKIL 119

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+ V   E V     + N +  +   D     C   ++ TG
Sbjct: 120 KKYNVQVHLNEPVTSITVKDNRVVGV-TTDKEQYACDAAIICTG 162


>gi|294101107|ref|YP_003552965.1| glucose-inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
 gi|293616087|gb|ADE56241.1| glucose-inhibited division protein A [Aminobacterium colombiense
           DSM 12261]
          Length = 460

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 148/468 (31%), Gaps = 102/468 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT---------------HKTSTIGSMSCNPA 49
            YDVI++G G AG  AA    K      ++                     +   SCN  
Sbjct: 2   KYDVIIVGSGPAGVFAAMELVKSDKKVLILDKGKLIKERKCPILEGLSPVCVNCNSCNIV 61

Query: 50  IGGLGKGHL--------------VREIDALDGL--MGRVADAAGIQF------------R 81
            G  G G                + E    D L  M R  D   + F             
Sbjct: 62  SGWGGAGTASDGKLTLTTGFGGNLEECIGEDALENMIRYVDDTFVSFGADKKYYEPTGEI 121

Query: 82  VLNVKKGPAVRGPRTQADRELYRLA-MQREILSQENLDVIQ-------GEVAGFNTEKNI 133
           V +  +  A RG +    R  +      R +L+    ++ +        EV        +
Sbjct: 122 VKDTIQKAASRGIKIIPARIRHIGTDASRMVLNNMYEELKEKCDILMNTEVKEVVVHSGV 181

Query: 134 ISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNS---- 185
           +  +V++D   I    V+L  G    ++L G+++   L I +  +       + +S    
Sbjct: 182 VEGVVLKDGQEINSEYVILAPGREGSSWLEGIVNKYNLPIASMPVDIGVRVEVSDSICQD 241

Query: 186 FMKFDFDTGRLKTGTPARLD-GKTIIWD-----KTEKQFADERLIPFSFMTDKITNRQIE 239
             K  ++  +    TP   D  +T   +       E   A + +         + ++   
Sbjct: 242 LTKHFYEV-KCLYNTPTFDDRCRTFCMNPSGFVVHEYNKAHDLVTVNGHSLKNVKSKNTN 300

Query: 240 CGITRTNLETHRI---------IMENIKHSAIYSGDIKSYGPRYCP--SIEDKIVRFGER 288
             I  T   T            I +     A     ++  G       S E +I R   +
Sbjct: 301 FAILVTKNFTQPFNDPIGYATHIAKLANMLAGGGILLQRLGDLRDGRRSTEARITRGMVK 360

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YA 340
              Q              P  +S  LP       +  I  L   NII PG        Y 
Sbjct: 361 PTAQAQ------------PGDLSLVLPHRFLIDVVEFIEAL---NIIMPGINMNDTLLYG 405

Query: 341 IE-YDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
           +E   Y    EL  TLET  I  L++AG   G + G  +AA+ G+VA 
Sbjct: 406 VEIKLYSLRLELKETLETPAIRNLYMAGDGAGVSRGIIQAASSGVVAA 453


>gi|257870412|ref|ZP_05650065.1| flavoprotein [Enterococcus gallinarum EG2]
 gi|257804576|gb|EEV33398.1| flavoprotein [Enterococcus gallinarum EG2]
          Length = 423

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +SYDVIVIG G +G  AA  AA+ GA   LI         +     + G G+ ++   
Sbjct: 1   MKKSYDVIVIGAGTSGMMAAISAAENGADVLLIEKNK----KVGKKLLMTGGGRCNVTNH 56

Query: 62  IDALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLA 106
               D +      G+   +   QF   +V       G   +           D+    + 
Sbjct: 57  RSVDDLIAHIPGNGKFLYSTFSQFNNFDVMTFFESHGVPLKEEDHGRMFPVTDKSKTIVE 116

Query: 107 MQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              + L ++ + ++    V     ++  I  +  +         V+LTTG
Sbjct: 117 GLLQALHEKQVTLLTNTVVTKLLHDETQIQGVRTEF-EEFTAPCVILTTG 165


>gi|293555125|ref|ZP_06674721.1| conserved hypothetical protein [Enterococcus faecium E1039]
 gi|291601726|gb|EFF31982.1| conserved hypothetical protein [Enterococcus faecium E1039]
          Length = 417

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   LI               + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKNK----KAGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G+   +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGKFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         V+LTTG
Sbjct: 116 EALLNRLKELDVTILFATRVEKLIHKEHKIYGIRTEF-EEFHAPAVILTTG 165



 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 349 KELFP-TLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           KE++P TLE+K I GL+ AG++   NG TG      A A G VAG+N+ ++
Sbjct: 366 KEIYPKTLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGMNAGQR 416


>gi|48477968|ref|YP_023674.1| geranylgeranyl hydrogenase [Picrophilus torridus DSM 9790]
 gi|74567677|sp|Q6L0M1|GGR_PICTO RecName: Full=Digeranylgeranylglycerophospholipid reductase;
           Short=DGGGPL reductase; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate
           reductase; AltName: Full=Geranylgeranyl reductase;
           Short=GGR
 gi|48430616|gb|AAT43481.1| geranylgeranyl hydrogenase [Picrophilus torridus DSM 9790]
          Length = 397

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 7/160 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGKGHLV 59
           +  +YDV+VIG G AG  AA  AA+ G  T LI  +      + C   +    + +  L 
Sbjct: 1   MEVNYDVLVIGAGPAGSSAARFAARKGLKTLLIEKRPDIGSPVRCGEGVSKSWMPEVELK 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E   +   +         + + + +    A        +R+ +   +   + + E  DV
Sbjct: 61  PEDHWISDEVKGARIYGPSEKKPIMLTAENAGNEVGYVVERDKFDKHI-AALAASEGADV 119

Query: 120 I-QGEVAGFNTEKNIISSIVMQDNSMI---RCSTVVLTTG 155
             +        + N I    ++ NS I   R   V+   G
Sbjct: 120 WVKSPALSVIKDGNRIVGAKVRHNSEIVDVRAKMVIAADG 159


>gi|4140576|gb|AAD04123.1| glucose-inhibited division protein A [Chlamydia trachomatis]
          Length = 42

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 37 KTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78
             TI  +SCNPA+GG+GKGH+VREIDAL G+M  + D +GI
Sbjct: 1  NLDTIAKLSCNPAVGGIGKGHIVREIDALGGIMAEITDLSGI 42


>gi|269839308|ref|YP_003324000.1| geranylgeranyl reductase [Thermobaculum terrenum ATCC BAA-798]
 gi|269791038|gb|ACZ43178.1| geranylgeranyl reductase [Thermobaculum terrenum ATCC BAA-798]
          Length = 413

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 13/165 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M    YDV+V+G G AG   A   A+ G    L+  K+      +C   +       L  
Sbjct: 22  MKAGKYDVVVVGAGPAGSACAWELARHGVRVLLLD-KSEFPRDKTCGDGLTPRAVSVLEG 80

Query: 60  ----REIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
               RE+  + G + +V     G     L +     +  PR + D  L R A       +
Sbjct: 81  MGLAREVAGMGGRVSQVRVVGPGGTSTTLGMPGRGGLVVPRLRLDDALLRRATSVGAEFE 140

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                 + E      +  +   + ++D   +R   VV+ TG   R
Sbjct: 141 AP---ARAEAVELEGQHAL---VRLEDGRGVRARMVVVATGASPR 179


>gi|149182617|ref|ZP_01861087.1| hypothetical protein BSG1_17925 [Bacillus sp. SG-1]
 gi|148849695|gb|EDL63875.1| hypothetical protein BSG1_17925 [Bacillus sp. SG-1]
          Length = 429

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 147/460 (31%), Gaps = 96/460 (20%)

Query: 1   MINR--SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M+ +  +YDVIVIGGG +G  A+  A + G    L          +    AI G G+ ++
Sbjct: 1   MVEQLNNYDVIVIGGGPSGLMASIAAGENGGKVLL----IDKGNKLGRKLAISGGGRCNV 56

Query: 59  VREIDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRL 105
              +  +D ++      GR   +A  +F   ++       G   + +             
Sbjct: 57  TNRL-PIDEIIKHIPGNGRFLYSAFSEFNNEDIIAFFEKLGIELKEEDHGRMFPVSNKAQ 115

Query: 106 AMQREILSQENLDVIQ----GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           ++   +L++ N   ++      V     +    + + ++        +V++  G    G 
Sbjct: 116 SVVDALLNRMNELGVEKRTNSPVKRVVYKDGRTAGVTLESGETFSAKSVIIAVG----GK 171

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                     G      +                  T  P   D   I   + E Q    
Sbjct: 172 SVPHTGSTGDGYAWAEEAGHTITDL---------FPTEVPLTSDEPFI--KERELQGLSL 220

Query: 222 RLIPFSFMTDKITN------RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
           R +  S +  K           I   +  +     R        S      +K +   + 
Sbjct: 221 RGVALSVLNPKGKPLITHKMDMIFTHLGISGPAVLRC-------SQYVVKAMKKWNLSHV 273

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI- 334
               D I    ++N   +F E   L         +   L   +  +++  +  LE+  I 
Sbjct: 274 TMHIDSI---PDKNEEMVFQELNTLIKKEEEKKAVKNILKGVLPERYL--LFLLERAEID 328

Query: 335 ------------------IRPGY--------AIEYDYINP-----KELFP-TLETKKISG 362
                             +  G+        +IE  ++       KE+ P T+ +KK+ G
Sbjct: 329 PDQKGITLSGEKIRELARLVKGFTFTVNGTLSIEKAFVTGGGVSVKEIQPKTMASKKMDG 388

Query: 363 LFLAGQ---INGTTG---YEEAAAQGLVAGINSARKSNKL 396
           LF  G+   I+G TG      A   G +AG N+A  + + 
Sbjct: 389 LFFCGEVLDIHGYTGGYNITSALVTGRLAGFNAALSALEQ 428


>gi|307688847|ref|ZP_07631293.1| glucose-inhibited division protein A [Clostridium cellulovorans
           743B]
          Length = 161

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 27/169 (15%)

Query: 310 ISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGL 363
           +ST  P E     +R IPGLE      P YA      I Y  ++P+     +  + +  L
Sbjct: 1   MSTYYPLEK----LRKIPGLEFAKYADP-YAGGIGNSIRYLAVSPR--TNDMRVRGLDNL 53

Query: 364 FLAGQINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           F+AG+ +G   G+ EA A G +AG N+ R    +  +    + + IG +I         E
Sbjct: 54  FVAGEKSGLFVGHIEAMATGSLAGYNAVRYGIGMPLLTLPISTA-IGDIISY-------E 105

Query: 423 PYRMFTSRA-EYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQE 470
            YR  T    + R +       NR+      LG      ++   +  + 
Sbjct: 106 NYRESTIDGRKNRYTFSGAEYFNRM----KSLGLYSLDNEEIKRRIEKN 150


>gi|69246935|ref|ZP_00604190.1| HI0933-like protein [Enterococcus faecium DO]
 gi|257878582|ref|ZP_05658235.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883217|ref|ZP_05662870.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257891853|ref|ZP_05671506.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894780|ref|ZP_05674433.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258616974|ref|ZP_05714744.1| hypothetical protein EfaeD_14871 [Enterococcus faecium DO]
 gi|260558913|ref|ZP_05831101.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261207274|ref|ZP_05921962.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566161|ref|ZP_06446595.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293562890|ref|ZP_06677361.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|294614248|ref|ZP_06694167.1| hypothetical protein EfmE1636_0357 [Enterococcus faecium E1636]
 gi|314939261|ref|ZP_07846512.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133a04]
 gi|314942988|ref|ZP_07849795.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133C]
 gi|314948589|ref|ZP_07851966.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0082]
 gi|314952506|ref|ZP_07855506.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133A]
 gi|314993092|ref|ZP_07858480.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133B]
 gi|314995938|ref|ZP_07861019.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133a01]
 gi|68195008|gb|EAN09473.1| HI0933-like protein [Enterococcus faecium DO]
 gi|257812810|gb|EEV41568.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818875|gb|EEV46203.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257828213|gb|EEV54839.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257831159|gb|EEV57766.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260075092|gb|EEW63406.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260078489|gb|EEW66192.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162022|gb|EFD09888.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592907|gb|EFF24497.1| hypothetical protein EfmE1636_0357 [Enterococcus faecium E1636]
 gi|291605142|gb|EFF34605.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313589862|gb|EFR68707.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133a01]
 gi|313592400|gb|EFR71245.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133B]
 gi|313595375|gb|EFR74220.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133A]
 gi|313598285|gb|EFR77130.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133C]
 gi|313641446|gb|EFS06026.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0133a04]
 gi|313645002|gb|EFS09582.1| conserved hypothetical protein TIGR00275 [Enterococcus faecium
           TX0082]
          Length = 417

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   LI               + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKNK----KAGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G+   +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGKFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         ++LTTG
Sbjct: 116 EALLNRLKELDVTLLFSTRVEKLIHKEHKIYGIRTEF-EEFHAPAIILTTG 165



 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 349 KELFP-TLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           KE++P TLE+K I GL+ AG++   NG TG      A A G VAG+N+ ++
Sbjct: 366 KEIYPKTLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGMNAGQR 416


>gi|331084839|ref|ZP_08333927.1| hypothetical protein HMPREF0987_00230 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410933|gb|EGG90355.1| hypothetical protein HMPREF0987_00230 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 415

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 132/429 (30%), Gaps = 62/429 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           ++IV+GGG +G  AA  AAK GAS  ++ H    +G        G     + ++E     
Sbjct: 3   NIIVVGGGASGLMAAISAAKSGASVCILEHN-EKLGKKILATGNGRCNFSNRLQEPSCYR 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                       QF V          G  T+ DR  Y      +  S   L+V+Q EV  
Sbjct: 62  SSQRNFPWQVIEQFPVEKTIAFFEELGICTR-DRGGYLYPGSDQAASV--LEVLQMEVER 118

Query: 127 FNTE---KNIISSIVMQDNS--------MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                     I  IV +              C  ++L TG+    V           +  
Sbjct: 119 LQIPVEYGVQICGIVKKKEQFEIRTATKRYHCQKLILATGSKASPVTGSDGSGYQYAKDL 178

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--------DKTEKQ---FADERLI 224
                 +  + +               R+ GK  ++        D  E Q   +    + 
Sbjct: 179 GHTIAPVLPALVALHAKENFFAALAGVRIQGKVTLFVDGTKCAEDTGELQLTKYGISGIP 238

Query: 225 PFSF--------MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            F             K     ++     T  E   I+   I+            G  Y  
Sbjct: 239 VFQVSRYASEGLYRKKEVIAVLDLAPNVTEKEMDDILRLRIRRHPERKMTEFFTG-MYHQ 297

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR-TIPG---LEKV 332
                I+R  + +  +   E                 +      + +R TI G    ++ 
Sbjct: 298 KFSQTILRLSKIDKKKSCQELSEREI-----------MILCRLLKSLRITIKGTNDFDQA 346

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGLVAG 386
            I      +  + ++PK    T+E+  +SGL+ AG++    G         A + G VAG
Sbjct: 347 QIC--AGGVRTEEVDPK----TMESHCVSGLYFAGELLDVDGICGGYNLQWAWSSGFVAG 400

Query: 387 INSARKSNK 395
             +A+ S  
Sbjct: 401 KCAAQSSIG 409


>gi|257884285|ref|ZP_05663938.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|293567459|ref|ZP_06678806.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|294620706|ref|ZP_06699913.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|257820123|gb|EEV47271.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|291589856|gb|EFF21657.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291599686|gb|EFF30696.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 417

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   LI               + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKNK----KAGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G+   +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGKFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         V+LTTG
Sbjct: 116 EALLNRLKELDVTLLFSTRVEKLIHKEHKIYGIRTEF-EEFHAPAVILTTG 165



 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 10/53 (18%)

Query: 346 INPKELFPTLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           I+PK    TLE+K I GL+ AG++   NG TG      A A G VAG+N+ ++
Sbjct: 368 IHPK----TLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGMNAGQR 416


>gi|78044144|ref|YP_361460.1| hypothetical protein CHY_2671 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996259|gb|ABB15158.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 461

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 146/480 (30%), Gaps = 112/480 (23%)

Query: 4   RSYDVIVIGGGHAGCEAAA--VAAKLGASTALITHKTS-----------TIGSMSCNP-- 48
           + YDVI++G G AG  AA    + K  A   ++                 I  ++C P  
Sbjct: 2   KKYDVIIVGAGPAGIFAALEITSLKPEAKVLILEKGPDVNKRICPSKERGIPCINCKPCA 61

Query: 49  ------AIGGLGKGHLVREIDALDGLMGRVA------------DAAGIQFRVLNVKKGPA 90
                   G +  G L    + + G +G               D   ++F   N   G  
Sbjct: 62  IVTGWGGAGAVSDGKLTLSTE-VGGHLGEYIGEKELNELIKYVDNIYLKFGAPNEVYG-- 118

Query: 91  VRGPRTQADRELYRLAMQREILSQEN----------LDVIQGE----------------V 124
               R +  RE+ + A+  ++               L+++                   V
Sbjct: 119 --IDREEEIREIQKRAILADLRLVPAPIRHLGTGRALEIVAAMKEELLRRGVDIATNTPV 176

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           A    +   +  +            V++  G    G   + K  +  G         +  
Sbjct: 177 AEIIADHGKVKGVQTTSGEYYEGEAVIVAPG--REGAEWLLKESLKLGLKTAVNPVDIG- 233

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM---------TDKITN 235
             ++ +     L+  T    + K I + KT +    +++  F             D I  
Sbjct: 234 --VRVELPAVVLEPITKVVYESKFIYYSKTFE----DKVRTFCMNPYGEVVQENNDGIIT 287

Query: 236 RQIECGITRTNLETH------RIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV------ 283
                   +    T+      +      K    Y   I          +  + +      
Sbjct: 288 VNGHSHAHKKTENTNFALLVSKTFTHPFKEPIAYGKYIARLANLLGGGVLVQRLGDLMDG 347

Query: 284 -RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG---- 338
            R  E    +  + P   +     P  +S   P       +  +  L+K   I PG    
Sbjct: 348 RRTTEERLKKGLVRPTLEDAT---PGDLSLVFPYRHLMALVEMLQALDK---IAPGVFNR 401

Query: 339 ----YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARK 392
               Y +E  + + + EL P LETK I  LF AG   G T G  +A+A G++ G   AR+
Sbjct: 402 NTLLYGVEVKFYSSRLELSPVLETK-IQNLFAAGDGAGVTRGLIQASASGVLIGRELARR 460


>gi|257075575|ref|ZP_05569936.1| geranylgeranyl hydrogenase [Ferroplasma acidarmanus fer1]
          Length = 396

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 7/157 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGKGHLVREI 62
           +YDV+VIG G AG  AA  A++ G  T L+  +      + C   I    + +  +  E 
Sbjct: 3   NYDVLVIGAGPAGSSAARYASRYGLKTLLVEKRPDIGSPVRCGEGISKAWMPEVDIKPEA 62

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQ 121
             +   +         + + + +    A        +R+ +   +   + + E  D+ I+
Sbjct: 63  HWISDEVKGARIYGPSEKKPIMLTAESAGNEVGFVVERDKFDKHI-ATLAATEGADIWIK 121

Query: 122 GEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTG 155
                   E N +    ++ N     +R   V+   G
Sbjct: 122 SPAMSVIKEGNRVVGAKIRHNGEEVEVRAKMVIAADG 158


>gi|325106983|ref|YP_004268051.1| glucose-inhibited division protein A [Planctomyces brasiliensis DSM
           5305]
 gi|324967251|gb|ADY58029.1| glucose-inhibited division protein A [Planctomyces brasiliensis DSM
           5305]
          Length = 753

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 117/383 (30%), Gaps = 62/383 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+GGG+AG  +A  AA++G   AL          +   P +GG G      E+   
Sbjct: 190 YDLVVVGGGYAGMGSAIAAARMGIRVAL----------IQNRPVLGGNGSS----EVRVW 235

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-REILSQENLDVI-QGE 123
              MG +    G    +  +    A    ++    E +  A + R +  + N+D+     
Sbjct: 236 --AMGHI--RRGEYPHIGEIVAEFADSATKSPGTYEEFEDAKKERIVRDEPNIDLFLNTH 291

Query: 124 VAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
                 + + I ++        +         V  TG    G++           + D  
Sbjct: 292 AYKVEKDGDEIEAVFAFDTRTSEVMRFTAPLFVDCTGHGTIGMLADADYD-----IHDGV 346

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA---------DERLIPFSFM 229
              + N +   + D+ +     P  LD     +                  + +     +
Sbjct: 347 RMGMSNMWAWEETDSTQSFPEVPWALDLTMADFPYPRDHHGQWFWESGFHKDPIKDLEAI 406

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER- 288
            D              N             +A  +      GPR    +   ++   E  
Sbjct: 407 RDWNLRAVFGAWNAIKNKGGAD-----DHKTARLTWLAYIGGPRESRRLLGDVILTQEDI 461

Query: 289 -NGHQIF--LEPEGLNTDVVYPNGIST-ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
            +  Q    + P   + D+ YP        P+           G+++    R GY + Y 
Sbjct: 462 VSKKQFPDGMVPSTWSIDLHYPKRQYMRKYPDNPFISVAEHGAGVDR----RYGYPVPYR 517

Query: 345 YINPKELFPTLETKKISGLFLAG 367
                       ++ +  LF+AG
Sbjct: 518 CFY---------SRNVPNLFMAG 531


>gi|283783828|ref|YP_003363693.1| FAD-dependent oxidoreductase [Citrobacter rodentium ICC168]
 gi|282947282|emb|CBG86827.1| FAD-dependent oxidoreductase [Citrobacter rodentium ICC168]
          Length = 428

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 32/174 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G AG  AA V A+ GA                    +  H    I  
Sbjct: 1   MSEDIFDAIVVGAGLAGSVAALVLAREGAQVLVIERGNSPGAKNVTGGRIYAHSLERI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
               P        +  +VRE  A       + D   +    LN ++  A  G      R 
Sbjct: 59  ---IPGFAEQAPVERRIVREKLAF------MTDCGAMTVDYLNAEEA-ASAGGSYSVLRS 108

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +   +  +  +     +    V      +  +  +   D  +I    V+L  G
Sbjct: 109 RFDAWLMEQAEAAGAQLIAGIRVDNVVQREGRVVGVE-ADGEIIESKVVILADG 161


>gi|315282947|ref|ZP_07871240.1| conserved hypothetical protein [Listeria marthii FSL S4-120]
 gi|313613394|gb|EFR87245.1| conserved hypothetical protein [Listeria marthii FSL S4-120]
          Length = 421

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFEKLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|150016805|ref|YP_001309059.1| glucose-inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903270|gb|ABR34103.1| glucose-inhibited division protein A [Clostridium beijerinckii
           NCIMB 8052]
          Length = 425

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 132/430 (30%), Gaps = 79/430 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VI+IGGG AGC AA  A KLGA   L       +G  +    +   G+     E+  L  
Sbjct: 3   VIIIGGGWAGCSAALEAVKLGAEVELYERTDLLLGVGNVGGIMRNNGRYTAAEELINLGA 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPA--VRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           G   R+ D+  I   +   +   A      + +     Y +    +I        +Q   
Sbjct: 63  GDFIRIMDSIAIHKNIDFPEHKHAWLCDIGKAEPIVRRYLIECGVKIF-------LQSRT 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT---------FLRGVIHIGKLKIPAGRMG 175
              N E N I S+V+ +  ++     V TTG+         +  G +         G   
Sbjct: 116 IDVNMEGNKIKSLVLFNKDIVTGDVFVETTGSTGSMPNCVKYGNGCVMCTLRCPSFGARV 175

Query: 176 DSPSNSLFNSF---MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDK 232
              S +  N                +    R      I  + EK      ++      + 
Sbjct: 176 SISSKAGVNDLVGERANGMKGAMSGSCEFPRESLSKDIIKELEK----NGVVVIPIPKED 231

Query: 233 ITNRQIE---CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
           I   ++E   C    T      II+ +     + +        R    +E+ +       
Sbjct: 232 IHLEKLEQKVCQQYATLEFAENIILLDTGRVKLMTSHYPLDKLRKIKGLENVV------- 284

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
                         +V  NG S                             I Y    P+
Sbjct: 285 ----------YIDPLVGGNGNS-----------------------------IRYLCAAPR 305

Query: 350 ELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYI 408
             + +++   +  LF  G+ +G   G+ EA   G +AG N+ +   K   +   R  +  
Sbjct: 306 --YNSMQVNGVENLFCGGEKSGFFVGHTEAMTTGTLAGYNAVQYLEKKPLLELPRELA-T 362

Query: 409 GVMIDDLTSK 418
           G +I     K
Sbjct: 363 GDIIAYANDK 372


>gi|332799299|ref|YP_004460798.1| hypothetical protein TepRe1_1345 [Tepidanaerobacter sp. Re1]
 gi|332697034|gb|AEE91491.1| HI0933 family protein [Tepidanaerobacter sp. Re1]
          Length = 412

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 157/430 (36%), Gaps = 68/430 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG AG  A+  A+  GAS  L     +    +     I G G+ +L   +  LD 
Sbjct: 5   VAVIGGGAAGLMASYQASVRGASVYLFERNPN----LGRKILISGKGRCNLTN-LKRLDE 59

Query: 68  LM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----------RLAMQRE 110
            +      G+   ++   F   ++       G +T+ +R                A+Q+ 
Sbjct: 60  FIEYFPGNGKFLFSSLSTFSNRDLIAFFEKLGVKTKVERGGRVFPVSDNSLDVVKALQKA 119

Query: 111 ILSQENLDVIQGE-VAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           + +   + +     + G   EK  I  + V  D+    C +VV+ TG             
Sbjct: 120 VTN-AGVHIKYKSRITGLIVEKQHIKGVIVGNDHERFDCDSVVIATGGLSYPATGSTGDG 178

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
               R        L  S +        +K      L  + +      KQ    + +   F
Sbjct: 179 YELARQVGHTITVLKPSLVPLISKEKWIKELQG--LTLRNVEATAYIKQ----KKLASEF 232

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                T+  I   I  T     R I++ ++   + S ++K         ++ +++R    
Sbjct: 233 GEMIFTHYGISGPIILT---LSRHIIDYLEEYPLVSINLKP--ALTEQELDKRLIRDFHL 287

Query: 289 NGHQIFLEPEGL-----------NTDVVYPNGISTALPEEIQHQF---IR----TIPGL- 329
             ++IF                 N   + P      + ++ + +    +R    TI G  
Sbjct: 288 YKNKIFKNAMNDLLPKKMIPVFINYTEIDPEKPVNQISQDDRKKIRDCLRNFQITISGCK 347

Query: 330 -EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQIN---GTTG---YEEAAAQG 382
            ++  + R G +++   INPK    T+E+K ++GLF AG++    G TG    + A + G
Sbjct: 348 EKEAIVTRGGVSVKE--INPK----TMESKIVNGLFFAGEVIDVDGVTGGYNLQSAFSTG 401

Query: 383 LVAGINSARK 392
            VAG NSA  
Sbjct: 402 FVAGCNSASA 411


>gi|307705255|ref|ZP_07642122.1| HI0933-like family protein [Streptococcus mitis SK597]
 gi|307621204|gb|EFO00274.1| HI0933-like family protein [Streptococcus mitis SK597]
          Length = 390

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 133/425 (31%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGHKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIV--------MQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+            +    C  +++TTG            
Sbjct: 116 ALEKKIAELGGQVLTQTEIVSVKKVENQFILKSTDQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKVLQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +  F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLAAFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E+ + Q +++I GL+        
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLLQSIKGLKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGTN 388


>gi|154490786|ref|ZP_02030727.1| hypothetical protein PARMER_00703 [Parabacteroides merdae ATCC
           43184]
 gi|154088851|gb|EDN87895.1| hypothetical protein PARMER_00703 [Parabacteroides merdae ATCC
           43184]
          Length = 635

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 84/241 (34%), Gaps = 47/241 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG---------K 55
            +D++V+GGG AGC  A  AA+LG   ALI ++    G+ S    +G  G          
Sbjct: 183 EFDLVVVGGGIAGCCTALSAARLGCKVALIQNRPVLGGNNSSEVRVGLSGLIAQQPYPNL 242

Query: 56  GHLVREIDALDGLMGRVAD------AAGIQFRVLN-------VKKGPAVRGPRTQADREL 102
           G+LV E+  +       A        +    ++L+          GPA        D + 
Sbjct: 243 GNLVDELGPVGHWNNWEAKRDSSSVRSRQIMKILHQYPEKTIHNAGPASNYE----DEKK 298

Query: 103 YRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGT 156
           + L     + +QENL++    +V       N I S++ ++       + +       TG 
Sbjct: 299 FAL-----LQNQENLNLFLNTQVVDVKKNGNKIVSVIGKNIISGKEYIFKAQLFSDCTGD 353

Query: 157 ----FLRGVIHIG--KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
               FL G  +    + K   G     P   L +  +            T    D     
Sbjct: 354 GEVGFLAGADYRMGRESKEETG----EPRAPLTSDLLVMGTSVQWYAEDTRNVSDFPDCP 409

Query: 211 W 211
           W
Sbjct: 410 W 410


>gi|307352942|ref|YP_003893993.1| geranylgeranyl reductase [Methanoplanus petrolearius DSM 11571]
 gi|307156175|gb|ADN35555.1| geranylgeranyl reductase [Methanoplanus petrolearius DSM 11571]
          Length = 388

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 83/260 (31%), Gaps = 30/260 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV GGG AG  AA   AK G +T L+    +    + C     GL   +   E +  
Sbjct: 3   YDVIVAGGGPAGSMAAKCCAKAGLNTLLVEEHAAVGTPVQC----AGLLSTNAFFECEVS 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  + +    A +   +       A        DR  +   M     +     +++  V 
Sbjct: 59  DRSVIQTVSGARVVSGLSCEFSFDAGEIKAYVVDRSAFDREMLEAAANAGAEIMLKTSVN 118

Query: 126 GFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP---AGRMGDSPSN 180
           G   +     +S+  +      R   +V   G         G  + P   +G   D P  
Sbjct: 119 GAIADNSGCTVSTTGVSGKQNFRSKMIVAADGPRSNFSRFFGMKRAPVFLSGIQADVPYE 178

Query: 181 SLFNSFMKFDFDT-------------GRLKTGTPARLDGKTIIWDKTEKQFADERLI--- 224
           S     ++                  GR + G  A  D   + + +  KQF    +    
Sbjct: 179 S-DGRLVELHPYASPGFFGWVIPAGKGRARVGLCAEKDTNEL-FTQFIKQFGPTNVHQVT 236

Query: 225 ---PFSFMTDKITNRQIECG 241
              P   M     NR + CG
Sbjct: 237 GTIPIGIMPRTYGNRTLFCG 256


>gi|282163174|ref|YP_003355559.1| geranylgeranyl reductase [Methanocella paludicola SANAE]
 gi|282155488|dbj|BAI60576.1| geranylgeranyl reductase [Methanocella paludicola SANAE]
          Length = 392

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 13/162 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G G AG  AA  AA+ G    LI  +      + C    G +G    +  
Sbjct: 1   MKSNYDVIVVGAGPAGSIAARTAAEQGLDVLLIEKRQEIGDPVRCAEGTGKMGLSQFIEP 60

Query: 62  IDAL-----DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                     G      D   I+       K       R   DR + + A +     Q  
Sbjct: 61  DPRWICAEVTGARIFAPDGTCIELNEKLAGKEVGYVLERKIFDRAVAKTAARAGAEVQ-- 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQ---DNSMIRCSTVVLTTG 155
              ++ +      E  ++  I  +   ++   R   VV   G
Sbjct: 119 ---VKTQATSLIKENGVVCGIKGKHRGEDFEARAKVVVGADG 157


>gi|313623128|gb|EFR93394.1| conserved hypothetical protein [Listeria innocua FSL J1-023]
          Length = 421

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYENGHVKGVTLKDGQEISASAVIVAVG 164


>gi|289423132|ref|ZP_06424947.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156463|gb|EFD05113.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 414

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 137/437 (31%), Gaps = 87/437 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-- 65
           V+V+G G AG  AA  AAK GA   +          +     I G G+ ++    D    
Sbjct: 4   VLVVGAGPAGMMAAYHAAKSGADVTIFERNPI----IGKKLRITGKGRCNITNAQDPEDI 59

Query: 66  -------DGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQ---------------ADREL 102
                     M     +      + L    G  ++  R Q                DR +
Sbjct: 60  IKNIYKNGNFMYSGIYSFSNDMAMDLFKSYGLKIKIERGQRVFPESDKAIDVVNTFDRMI 119

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
               ++  + ++         V     +K+  I  +   +N ++ C +++L TG     +
Sbjct: 120 KDAGVKLILNNR---------VKSIEVDKDKNILGLRTAENDLVSCDSIILATGGKSYPL 170

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT---EKQF 218
                      +        L  S      +T    +     L+ + +        +  +
Sbjct: 171 TGSTGDGYKMSKKLGHTCTELSPSL--VGLETMPRPSSDLVGLNLRNVSIKLLKNAKPIY 228

Query: 219 ADERLIPF-SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC-P 276
           +D   + F  +  D    +   C I+        + ++           ++     +   
Sbjct: 229 SDFGELEFRDYGIDGPIIKSASCYISDKGDYEVELDLKPALSFQKLDKRLQRDFEEFSNK 288

Query: 277 SIEDKIVRF----------------GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
             E+ +V+                  ++  HQI    E          G+  ++      
Sbjct: 289 DFENSLVKLLPKSIIGYIIDESGIDRKKLVHQIT-RQERH-----NLVGLIKSIKFH--- 339

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTT----GY 375
             I++   +++  +   G       IN KE+ P T+E+K +  L+  G+I        GY
Sbjct: 340 --IKSTRPIDEAIVTSGG-------INVKEINPSTMESKIVKNLYFCGEIIDVDAFTGGY 390

Query: 376 EEAAA--QGLVAGINSA 390
               A     +AGIN+A
Sbjct: 391 NLQIAYSTAYLAGINAA 407


>gi|302339853|ref|YP_003805059.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637038|gb|ADK82465.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Spirochaeta smaragdinae DSM 11293]
          Length = 486

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 23/170 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            N  YDVIV GGG +G  AA  AA+ GA T L+      +G++    +  G       R 
Sbjct: 3   YNTVYDVIVCGGGTSGVSAAISAARNGAKTLLV----ERLGALGGQMSTSGPPGFAYARL 58

Query: 62  IDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPR-----------TQADRELYRLAMQR 109
            +      +G + +     F+ L    G A+   R           +  D + + + +  
Sbjct: 59  FNPQGKRDVGGIVEET---FQRLLKS-GHALPHLRYPFREKAGYTFSYVDPDWWTMLIFE 114

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
            +  ++   ++   V G   EK+ ++ IV+++    + I+   V+  TG 
Sbjct: 115 MLEDEKAELLLDTLVVGVTKEKDTVTGIVVENANGRNEIKGKIVIDCTGE 164


>gi|313618161|gb|EFR90250.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|255521730|ref|ZP_05388967.1| hypothetical protein LmonocFSL_10982 [Listeria monocytogenes FSL
           J1-175]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|224500266|ref|ZP_03668615.1| hypothetical protein LmonF1_11569 [Listeria monocytogenes Finland
           1988]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|254831481|ref|ZP_05236136.1| hypothetical protein Lmon1_09008 [Listeria monocytogenes 10403S]
 gi|284802363|ref|YP_003414228.1| hypothetical protein LM5578_2119 [Listeria monocytogenes 08-5578]
 gi|284995505|ref|YP_003417273.1| hypothetical protein LM5923_2070 [Listeria monocytogenes 08-5923]
 gi|284057925|gb|ADB68866.1| hypothetical protein LM5578_2119 [Listeria monocytogenes 08-5578]
 gi|284060972|gb|ADB71911.1| hypothetical protein LM5923_2070 [Listeria monocytogenes 08-5923]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|254827197|ref|ZP_05231884.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258599580|gb|EEW12905.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|46908151|ref|YP_014540.1| hypothetical protein LMOf2365_1947 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|226224522|ref|YP_002758629.1| hypothetical protein Lm4b_01935 [Listeria monocytogenes Clip81459]
 gi|254825587|ref|ZP_05230588.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852821|ref|ZP_05242169.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931911|ref|ZP_05265270.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300763772|ref|ZP_07073769.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|46881421|gb|AAT04717.1| conserved hypothetical protein TIGR00275 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876984|emb|CAS05693.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606150|gb|EEW18758.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583463|gb|EFF95495.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293594830|gb|EFG02591.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515508|gb|EFK42558.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|328466267|gb|EGF37424.1| hypothetical protein LM1816_11817 [Listeria monocytogenes 1816]
 gi|332312358|gb|EGJ25453.1| NAD(FAD)-utilizing dehydrogenase [Listeria monocytogenes str. Scott
           A]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|16803957|ref|NP_465442.1| hypothetical protein lmo1918 [Listeria monocytogenes EGD-e]
 gi|224501283|ref|ZP_03669590.1| hypothetical protein LmonFR_01960 [Listeria monocytogenes FSL
           R2-561]
 gi|16411371|emb|CAC99996.1| lmo1918 [Listeria monocytogenes EGD-e]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|16801098|ref|NP_471366.1| hypothetical protein lin2032 [Listeria innocua Clip11262]
 gi|16414533|emb|CAC97262.1| lin2032 [Listeria innocua Clip11262]
          Length = 421

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|304316800|ref|YP_003851945.1| glucose-inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778302|gb|ADL68861.1| glucose-inhibited division protein A [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 427

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQ 368
           +        +R IPGLE+     P   G A  I Y  I P+    +++ K +  L  AG+
Sbjct: 267 MTPFYPLDKLRKIPGLERARFEDPYSGGKANSIRYLSIAPR--NNSMKVKGLDNLLCAGE 324

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            +G  TG+ EA   G +AG NS R S  +  +   R  +   ++  +       E
Sbjct: 325 KSGLFTGHTEAMVTGCLAGHNSVRLSLGMPLLELPRNLASGDLIAYENECIETKE 379


>gi|239828092|ref|YP_002950716.1| HI0933 family protein [Geobacillus sp. WCH70]
 gi|239808385|gb|ACS25450.1| HI0933 family protein [Geobacillus sp. WCH70]
          Length = 427

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 20/171 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-- 58
           M   +Y+V+VIGGG +G  AA  AA+ GA   L          +    AI G G+ ++  
Sbjct: 1   MKKMTYEVVVIGGGPSGLMAAIGAAEQGAKVLL----IEKGNKLGRKLAISGGGRCNVTN 56

Query: 59  ---VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQ 108
              V EI       GR   +A  +F   ++ +     G + + +             ++ 
Sbjct: 57  RLPVEEIIKHIPGNGRFLYSAFSEFNNEDIIRFFERLGVQLKEEDHGRMFPVTDNAQSVV 116

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           + ++++ + L V   +   VA    E      + ++    I    VV+  G
Sbjct: 117 QALVNELKRLHVDIRLNTPVADVEYEHGKTIGVTLKTGEFIGAKAVVVAVG 167


>gi|332981014|ref|YP_004462455.1| hypothetical protein Mahau_0417 [Mahella australiensis 50-1 BON]
 gi|332698692|gb|AEE95633.1| HI0933 family protein [Mahella australiensis 50-1 BON]
          Length = 492

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 145/475 (30%), Gaps = 112/475 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAA--AVAAKLGASTALI--------------THKTSTIGSMS 45
           ++  YDVI+IG G AG  AA   V  + G    ++                         
Sbjct: 28  MDNRYDVIIIGAGPAGIFAAIELVERRPGIRVLMLEKGKPIADRQCPSGNKSLQCAQCRP 87

Query: 46  CNPAIG-------GLGKGHLVREIDALDGLMGRVA------------DAAGIQF------ 80
           C+   G         GK  L  E     G++                D   ++F      
Sbjct: 88  CSIVSGWGGAGAFSDGKLTLTTE---FGGMLNEYISEQELRDLIQYVDKIYVKFGAPKEA 144

Query: 81  --------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF----- 127
                     +  +   A         + L      + + + E  + ++G V        
Sbjct: 145 HPLVEDKIEDIKRRAAAADLKFIPAIIKHLGTDRCFQILKNIE--EYLRGRVDILTLTSV 202

Query: 128 ---NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               TE+  +  +  +D  +     V+        G       +    ++     N+  +
Sbjct: 203 KDILTERGRVVGVKTEDGDVYCADYVIAGP-----GREGAEWFQKQTRKLKLKTVNNAVD 257

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF---------MTDKITN 235
             ++ +     +K  T A  + K + + ++     D+++  F             D I  
Sbjct: 258 IGVRVEVPAVVMKELTDAVYESKLLYYSRS----FDDKVRTFCMNPYGEVVVENNDGIRT 313

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDI--------------KSYGPRYCPSIEDK 281
                   +    T+  ++ +   +  ++  I              +    +    + D 
Sbjct: 314 VNGHSYADKRTDNTNFALLVSKDFTEPFNAPIEYGKYIASLANMLGEGVLVQRLGDLLDG 373

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--- 338
                +R    + +EP   +     P  +S  LP       I  +  L+K   I PG   
Sbjct: 374 RRSTPDRIKKGL-VEPTLKDAT---PGDLSLVLPYRHLMDIIEMLQALDK---IAPGVYS 426

Query: 339 -----YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
                Y +E  + + + EL   LETK +  LF AG   G T G  +A+A G+V  
Sbjct: 427 KHTLMYGVEVKFYSARAELSRHLETK-VENLFAAGDGAGVTRGLAQASASGVVVA 480


>gi|182416837|ref|ZP_02948224.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237667336|ref|ZP_04527320.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182379299|gb|EDT76798.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237655684|gb|EEP53240.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 401

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 126/402 (31%), Gaps = 72/402 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------ 60
           +VIV+G G AG  AA  +AK                ++     + G G+ ++        
Sbjct: 3   NVIVVGAGPAGIMAALSSAKNNEVVL-----IERNSNIGEKLKLTGGGRCNITNNRDIEE 57

Query: 61  --EIDALDGLMGRVADAAGIQFRVLN-------VKKGPAVRGPRTQADRELYRLAMQREI 111
             E    +      A      + +L          K    +   T++D+    + + +  
Sbjct: 58  FFEKIVTNNKFLYSALYTFSNYSLLEYFSEQGLEYKEELDQKVYTKSDKADEVIEVLKND 117

Query: 112 LSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG------TFLRGVIHI 164
           L   N+ ++    +     E N +  ++ +    I    V++TTG      T   G ++ 
Sbjct: 118 LKNNNVKIMFNTKIEDLIVEDNTVKGVISEGGKRIYGDKVIVTTGGKSFPNTGSDGSMYD 177

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
              K   G        +L    +K +F            +    +   K EK   D    
Sbjct: 178 VIKKY--GHTITPIYPALIPLVIKEEFVKSLQGVSMKDVVISAKVKKRKIEK-IGDMIFT 234

Query: 225 PF-----------SFMTDKITNRQIECGITR----TNLETHRIIMENIKHSAIYSGD-IK 268
            F           S++   + + ++E  +      +  E   II  N   +A+ +   I 
Sbjct: 235 HFGVSGPGVLKLSSYINKALNDGEVEIKLDFMSDKSKEELSEIIRSNPNKTALNNLKGIL 294

Query: 269 SYGPRYCPSIEDKI--VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
                        I  V+  +       L+ E  N  + Y   +     E +  +     
Sbjct: 295 PQNFLKEIFCIIGITEVKASD-------LKKEDENKILEYIKEMRLTARETLTIKA---- 343

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPT-LETKKISGLFLAG 367
                  +   G ++       KE+  + +E+K I  L+ AG
Sbjct: 344 -----AQVTSGGVSV-------KEINASNMESKIIKNLYFAG 373


>gi|116873360|ref|YP_850141.1| hypothetical protein lwe1944 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742238|emb|CAK21362.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 421

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTTVKQVDYEGGHVKGVTLKDGQEISASAVIVAVG 164


>gi|289670826|ref|ZP_06491901.1| hydroxylase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 420

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 14/127 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EI 62
           DV+++GGG AGC AA   A+LG S +L+              ++  +    L R    E 
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVSLLE--KEQHPRFHIGESLLPMNMPILQRLGVLED 71

Query: 63  DALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
               G++ R AD              + L+ K   A + PR Q D+ L++ A    + ++
Sbjct: 72  VRAVGVLKRGADFPNDSGGYNTFRFSQALDAKADFAFQVPRAQFDQVLFQRARAVGVDAR 131

Query: 115 ENLDVIQ 121
           E + V Q
Sbjct: 132 ERVHVEQ 138


>gi|289664703|ref|ZP_06486284.1| hydroxylase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 461

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 14/127 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----EI 62
           DV+++GGG AGC AA   A+LG S +L+              ++  +    L R    E 
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVSLLE--KEQHPRFHIGESLLPMNMPILQRLGVLED 83

Query: 63  DALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
               G++ R AD              + L+ K   A + PR Q D+ L++ A    + ++
Sbjct: 84  VRAVGVLKRGADFPNDSGGYNTFRFSQALDAKADFAFQVPRAQFDQVLFQRARAVGVDAR 143

Query: 115 ENLDVIQ 121
           E + V Q
Sbjct: 144 ERVHVEQ 150


>gi|254992832|ref|ZP_05275022.1| hypothetical protein LmonocytoFSL_07134 [Listeria monocytogenes FSL
           J2-064]
          Length = 421

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNKRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|302393001|ref|YP_003828821.1| thioredoxin reductase [Acetohalobium arabaticum DSM 5501]
 gi|302205078|gb|ADL13756.1| thioredoxin reductase [Acetohalobium arabaticum DSM 5501]
          Length = 397

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YDV++IGGG AG  A   A++    T L+               +GG  K +   E
Sbjct: 1   MNKEYDVLIIGGGPAGLSAGMYASRSKLDTLLLE-----------TGDVGGQPKSY--EE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++   G++   A      F+    K G                             ++ +
Sbjct: 48  MENYPGVLDASAPELMDNFKEHAEKFGT----------------------------EIKE 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           GEV   + +   + ++  ++    +  +++L TG 
Sbjct: 80  GEVKEIDADGF-VKTVTTKEGVEYKAKSIILATGA 113


>gi|147679219|ref|YP_001213434.1| hypothetical protein PTH_2884 [Pelotomaculum thermopropionicum SI]
 gi|146275316|dbj|BAF61065.1| Uncharacterized FAD-dependent dehydrogenases [Pelotomaculum
           thermopropionicum SI]
          Length = 462

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 152/474 (32%), Gaps = 96/474 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITH--KTST---------IGSMSCNP 48
           +N  YDV+++G G AG  AA    KL  G    +I                 +    C+P
Sbjct: 1   MNSQYDVVIVGAGPAGIFAALELVKLKTGLRILIIEKGRNIDERRCVARERDVHCARCSP 60

Query: 49  --------AIGGLGKGHLVREIDALDGLMGRVADAAGIQF----RVLNVKKGPAVRGPRT 96
                     G    G L    +    L   V +            + VK G   +    
Sbjct: 61  CSTICGWGGAGAFSDGKLTLSTEVGGSLEQYVGEKELAGLIDYIDRIFVKFGAPEQVYGL 120

Query: 97  QADRELYRLAMQREILSQENL--------------DVIQGE----------------VAG 126
           + + E+ +   +R +L++  L              +V+Q                  V  
Sbjct: 121 EHEEEI-QEMQRRAVLAELKLVPVRIRHMGTGRCAEVLQRMQEYLLSHGVEVRTSCLVDE 179

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +V QD   I    VVL  G      +     ++  G   +     +    
Sbjct: 180 VTVEGGTVRGVVTQDGEAIGARYVVLAPGREGSEWLAREAQRMGLGTAVNPVDIGV---- 235

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF---------MTDKITNRQ 237
            + +     +   T    + K I + +T      +++  F             D +    
Sbjct: 236 -RVELPAAVMDHLTRIFYEAKFIYYSRT----FSDKVRTFCMNPNGEVVLENNDGLVTVN 290

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED-----KIVRF------G 286
                      T+  ++ +   +  +   I +YG RY  S+ +      IV+       G
Sbjct: 291 GHSHAYNKTENTNFAVLVSKTFTEPFKEPI-AYG-RYIASLANLLGGGVIVQSLGDLLAG 348

Query: 287 ERNGHQIFLEPEGLNTD-VVYPNGISTALPEEIQH---QFIRTIPGLEKVNIIRPG--YA 340
            R+  +   +   + T     P  +S   P        + +R +  L      R    Y 
Sbjct: 349 RRSTRERLAKCMTVPTLAEATPGDLSLVFPYRHLMGIVEMLRALDRLAPGVYSRYTLLYG 408

Query: 341 IEYDYINPKE-LFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARK 392
           +E  + + +  L  +LET ++  LF AG   G T G  +A+A G+VA    A++
Sbjct: 409 VEVKFYSSRLALSDSLET-QVKNLFAAGDGAGVTRGLAQASAAGVVAAREIAKR 461


>gi|322387407|ref|ZP_08061017.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           infantis ATCC 700779]
 gi|321141936|gb|EFX37431.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           infantis ATCC 700779]
          Length = 392

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 135/425 (31%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKIIELGGQIATQTEIVSVKKIDDQFVLKSADQTFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKSLQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S ED +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPQLS-EDDLVNFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E+ + Q +++I  L+        
Sbjct: 271 ENREKSLKNALKSLFPE--RLAEFFVQGYPEKVKQLTEKERDQLVQSIKVLKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  I    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GISLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGSN 388


>gi|168207230|ref|ZP_02633235.1| glucose-inhibited division protein A [Clostridium perfringens E
           str. JGS1987]
 gi|170661417|gb|EDT14100.1| glucose-inhibited division protein A [Clostridium perfringens E
           str. JGS1987]
          Length = 161

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLE    + P YA      I Y  + P+     ++ K ++ LF AG
Sbjct: 1   MTTYYPLEKLRKIKGLENAKYVDP-YAGGKGNSIRYLSVAPR--DDNMKVKGVTNLFCAG 57

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTD 405
           + +G   G+ EA   G +AG N+ R +  +  +   R  
Sbjct: 58  EKSGLFVGHTEAIVTGTLAGHNAVRHALGIPYLILPRAT 96


>gi|311069501|ref|YP_003974424.1| putative NAD(FAD) dehydrogenase [Bacillus atrophaeus 1942]
 gi|310870018|gb|ADP33493.1| putative NAD(FAD) dehydrogenase [Bacillus atrophaeus 1942]
          Length = 422

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 20/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIGGG +G  AA  A + GAS  L          +    AI G G+ ++   + 
Sbjct: 2   KQYDVIVIGGGPSGLMAAIAAGEQGASVLL----IDKGNKLGRKLAISGGGRCNVTNRLP 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQ 108
             + +      GR   +A  +F   ++       G + +           D+    +   
Sbjct: 58  VEELIKHIPGNGRFLYSAFSEFNNEDIIAFFEKLGIQLKEEDHGRMFPVTDKAQSVVDAL 117

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + L Q  + +   E +   + E    + I+  ++ +I    V++  G
Sbjct: 118 LDRLKQLGVTIRTNEKIKTVSYENGRAAGIITNNDEVIHARAVIIAVG 165


>gi|157376364|ref|YP_001474964.1| FAD dependent oxidoreductase [Shewanella sediminis HAW-EB3]
 gi|157318738|gb|ABV37836.1| FAD dependent oxidoreductase [Shewanella sediminis HAW-EB3]
          Length = 430

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MEEEAFDAIIVGAGLAGCVAAYVLAKEGADVLV----IERGNYAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG--PRTQADRELYRLA 106
                       E       +  + D  G+     N +   + +      + D + + +A
Sbjct: 57  KIIPGFAKEAPVERKVTKEKVTFLTDDTGVTLDYHNGRSQTSTQESYTVLRGDFDQWLMA 116

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              E+ +Q    +    V    T+   +  +   D   +    V+L  G
Sbjct: 117 KAEEVGAQFITGIR---VDELITKDGKVVGVN-ADGDELIAKAVILAEG 161


>gi|282164150|ref|YP_003356535.1| geranylgeranyl reductase [Methanocella paludicola SANAE]
 gi|282156464|dbj|BAI61552.1| geranylgeranyl reductase [Methanocella paludicola SANAE]
          Length = 389

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 14/161 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +YDVIV+G G AG  AA  AA+ G    LI  +      + C   +   G    +  
Sbjct: 1   MKNNYDVIVVGAGPAGSVAATTAARKGLDVLLIEKRQEIGVPVRCAEGVIKAGLDEFIEY 60

Query: 62  IDALDGLMGRV----ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
                 +   V      A        + +        R   DR L + A       Q   
Sbjct: 61  DPKW--VCAEVRRGRIHAPDGNMLCFSQEDTAGYILDRKIFDRSLAKTAAHAGSEVQ--- 115

Query: 118 DVIQGEVAGFNTEKNIISSIVMQD-NSMI--RCSTVVLTTG 155
             ++ +  G   E   +  I  +        R   ++   G
Sbjct: 116 --VKTQATGLIIEDGCVKGITGKCRGQEFEARAKVIIGADG 154


>gi|269140013|ref|YP_003296714.1| oxidoreductase [Edwardsiella tarda EIB202]
 gi|267985674|gb|ACY85503.1| oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559844|gb|ADM42508.1| Probable electron transfer flavoprotein-quinone oxidoreductase FixC
           [Edwardsiella tarda FL6-60]
          Length = 448

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V A+ GA+  +                 GG    H + 
Sbjct: 19  MSEDAFDAIIVGAGLAGCVAALVLARAGANVLV----IERGNYAGAKNVTGGRLYAHTLE 74

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG----PRTQADRELYR 104
                       E       +  +   + +     N + G A        R + D  L  
Sbjct: 75  RIIPGFAEQAPVERRITHEKISFLTADSAVTLDYHNARDGAAEAASYSVLRGKFDTWLME 134

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A          +      V         +  +   D   +  + V+L  G
Sbjct: 135 QAEAAGAQFIPGIR-----VDRLIQRDGRVVGVE-ADGDELEANVVILAEG 179


>gi|47096501|ref|ZP_00234093.1| conserved hypothetical protein TIGR00275 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254899385|ref|ZP_05259309.1| hypothetical protein LmonJ_06214 [Listeria monocytogenes J0161]
 gi|254912476|ref|ZP_05262488.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936803|ref|ZP_05268500.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47015154|gb|EAL06095.1| conserved hypothetical protein TIGR00275 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609398|gb|EEW22006.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590458|gb|EFF98792.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 421

 Score = 58.0 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+       
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------- 114

Query: 107 MQREILSQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               I   E L V   +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 115 --AMIQRMEKLGVKIHMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|152992758|ref|YP_001358479.1| hypothetical protein SUN_1167 [Sulfurovum sp. NBC37-1]
 gi|151424619|dbj|BAF72122.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 417

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 129/401 (32%), Gaps = 55/401 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            + YD+IVIG G AG   A  AA+ G    L       +  +       G G+ +L   +
Sbjct: 5   EKRYDLIVIGSGAAGMMVAITAARKGKKVLL----LEKLSKIGAKLKATGGGRCNLTNTL 60

Query: 63  DALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL--------AMQR 109
           D        G  G+    A   F    +       G  + A  + YR+         +  
Sbjct: 61  DNETFMSRFGRDGKFMMPALEAFDHKELMAFFKEIGVESHAP-DGYRVFPVTHSSSTIIN 119

Query: 110 EILSQE---NLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGV 161
            +  +     ++V    +V G + + + ++ +  + +S      +V+ TG      L   
Sbjct: 120 AMEKEMQRLGVEVRCSQKVTGLSHDDSQVAGVETETDS-FEADHIVVATGGKGYPVLGAE 178

Query: 162 IHIGKLKIPAGR-MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ--- 217
                L    G  + +     +     +         T     +      + K + Q   
Sbjct: 179 GDGYMLAKSIGHTVTEVYPAMMPLKTKEKWVANCTADTIAKVVMTVDMKKYKKLKAQGDL 238

Query: 218 ----FADERLIPFSFMTDKITN----RQIECGITRTNLETHRIIMENIK---HSAIYSGD 266
                     +   F  +         ++   +  T       I  +IK       +   
Sbjct: 239 IFTKSGIRGPVVLDFSREITPLLSKYEEVPVLMNLTKGMNEEQIRSHIKKELEKKPHRNT 298

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326
           ++        S+  ++ +  E + +    + +G   D +    +ST L        +   
Sbjct: 299 LEIVSTLLPESVSRELCKLAEADTNTALGKLKGQTRDRLIRLLVSTPLT-------VNGH 351

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
            G +   I R G +++   I+P     T++++K+ GL+  G
Sbjct: 352 DGFKMAMITRGGVSLKE--IDPY----TMQSRKMDGLYFCG 386


>gi|257887014|ref|ZP_05666667.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257898169|ref|ZP_05677822.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293377831|ref|ZP_06624016.1| flavoprotein family protein [Enterococcus faecium PC4.1]
 gi|257823068|gb|EEV50000.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257836081|gb|EEV61155.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|292643541|gb|EFF61666.1| flavoprotein family protein [Enterococcus faecium PC4.1]
          Length = 417

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   LI               + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKNK----KAGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G    +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGNFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         V+LTTG
Sbjct: 116 EALLNRLKELDVTILFSTRVEKLIHKEHKIYGIRTEF-EEFHAPAVILTTG 165



 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 10/53 (18%)

Query: 346 INPKELFPTLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           I+PK    TLE+K I GL+ AG++   NG TG      A A G VAG N+ ++
Sbjct: 368 IHPK----TLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGRNAGQR 416


>gi|227551864|ref|ZP_03981913.1| flavoprotein [Enterococcus faecium TX1330]
 gi|257895544|ref|ZP_05675197.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227179036|gb|EEI60008.1| flavoprotein [Enterococcus faecium TX1330]
 gi|257832109|gb|EEV58530.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 417

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVIV+G G +G  AA  AA+ GA   LI               + G G+ ++   
Sbjct: 1   MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKNK----KAGKKLLMTGGGRCNVTNN 56

Query: 62  IDALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQ 108
              +D L+      G    +   Q+   ++      +G   + +              + 
Sbjct: 57  -RPVDDLIAHIPGNGNFLYSTFAQWNNFDIMNFFESQGVHLKEEDHGRMFPVTNKSKTII 115

Query: 109 REILSQ-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +L++ + LDV       V     +++ I  I  +         V+LTTG
Sbjct: 116 EALLNRLKELDVTILFSTRVEKLIHKEHKIYGIRTEF-EEFHAPAVILTTG 165



 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)

Query: 354 TLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           TLE+K I GL+ AG++   NG TG      A A G VAG N+ ++
Sbjct: 372 TLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGRNAGQR 416


>gi|168333391|ref|ZP_02691671.1| hypothetical protein Epulo_00909 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 591

 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 26/164 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +D +VIGGG +G   A  AA+ G +TAL+    S +G        G       V  
Sbjct: 4   VTKQFDFVVIGGGISGLCMAISAARNGVNTALV-QNRSMLG--------GNASSEMRVHV 54

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA---MQREILSQENLD 118
             A  G   R A  +GI   +L   K               Y +    +  +   QENL+
Sbjct: 55  NGAERGGNFRNALESGIIMEILMANKNVNPESS--------YHIWDTVLWEKAKFQENLE 106

Query: 119 VIQGE-VAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGT 156
           +           E N I+ ++      +            TTG 
Sbjct: 107 LFLNTNAFDLVVEDNKITKVIAVQNTTEIEFTFEAKYFADTTGD 150


>gi|306825616|ref|ZP_07458955.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431977|gb|EFM34954.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 404

 Score = 57.6 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 139/422 (32%), Gaps = 76/422 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 15  KHFDTIVIGGGPAGMMAAISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 70

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 71  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 128

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        + +  C  +++TTG            
Sbjct: 129 ALEKKITELGGQVATQTEIVSVKKIDDQFVLKSADQIFTCDKLIVTTGG------KSYPS 182

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 183 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 230

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +  F E
Sbjct: 231 YGKHVITHDLLFTHFGLSGPAALR------MSSLVKGGEVLSLDVLPQLS-EKDLAAFLE 283

Query: 288 RNGHQIFLE------PEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN------ 333
           +N  +          PE L    V  YP+ +   L E+ + Q +++I  L+         
Sbjct: 284 KNREKSLKNALKTLLPERLAEFFVQEYPDKVK-QLTEKEREQLLQSIKALKIPVTGKMSL 342

Query: 334 ---IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLV 384
               +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G V
Sbjct: 343 AKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWV 397

Query: 385 AG 386
           AG
Sbjct: 398 AG 399


>gi|125623138|ref|YP_001031621.1| putative flavoprotein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491946|emb|CAL96872.1| putative flavoprotein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069886|gb|ADJ59286.1| putative flavoprotein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 424

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----L 58
           +++DVIV+G G +G  AA  AA+ GA  AL          +     + G G+ +      
Sbjct: 6   KTFDVIVVGAGPSGMMAAISAAENGAKVAL----IDKNKKVGKKLLMTGGGRCNVTNSRS 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELY-RLAM 107
           V EI A     GR   +A  QF  L++       G + +           D+      A+
Sbjct: 62  VDEILANVPGNGRFLHSAFSQFSNLDIINFFESNGVKLKEEDHGRMFPVTDKSKTIVDAL 121

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +ILS          V+    E   I  +   D+      T+VL+TG
Sbjct: 122 FNKILSLHVSYFPSQAVSQLIIENGAIVGLET-DSESYLSPTIVLSTG 168


>gi|166710288|ref|ZP_02241495.1| hydroxylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 449

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 18/129 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG   ++ 
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLG---VLA 70

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           E+ A+ G++ R AD                L+ K   A + PR Q D+ L++ A    + 
Sbjct: 71  EVRAI-GVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDQVLFQRARAVGVD 129

Query: 113 SQENLDVIQ 121
           ++E + V Q
Sbjct: 130 AREQVSVEQ 138


>gi|309806751|ref|ZP_07700745.1| hypothetical protein HMPREF9212_0535 [Lactobacillus iners LactinV
          03V1-b]
 gi|308166866|gb|EFO69051.1| hypothetical protein HMPREF9212_0535 [Lactobacillus iners LactinV
          03V1-b]
          Length = 65

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V VIGGG AG EA    AK G    L   +   +        +  L   + +R 
Sbjct: 5  VTVIGGGLAGSEATWQLAKRGIEVDLYEMRPVKMTPAHETGNLSELVCTNSMRS 58


>gi|222148597|ref|YP_002549554.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Agrobacterium vitis S4]
 gi|221735583|gb|ACM36546.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Agrobacterium vitis S4]
          Length = 402

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREID 63
           DV VIG G AG  AA   A+ G    L+   T       +   + +I  L +  L  E+ 
Sbjct: 5   DVTVIGAGLAGSVAALALARRGRKVTLVAGDTRPKDRRTAALMDQSIRFLDRLGLWEELK 64

Query: 64  ALDGLM--GRVADAAGIQFR---VLNVKK--GPAVRGPRTQADRELYRLAMQREILSQEN 116
           +    +   ++ D      R   V       G A  G   Q    L        +  + N
Sbjct: 65  SQGEALSTMQIIDGTKRLLRAPPVAFRSSEIGLAAFGYNFQNSDLL--DVFDAALARESN 122

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L V+  + A  +  ++    + + DN++I C  VV   G
Sbjct: 123 LTVLHQQAASIDFSQDNAR-VTLADNTVIECDLVVGADG 160


>gi|254976282|ref|ZP_05272754.1| putative lipoprotein [Clostridium difficile QCD-66c26]
 gi|255093668|ref|ZP_05323146.1| putative lipoprotein [Clostridium difficile CIP 107932]
 gi|255315417|ref|ZP_05357000.1| putative lipoprotein [Clostridium difficile QCD-76w55]
 gi|255518082|ref|ZP_05385758.1| putative lipoprotein [Clostridium difficile QCD-97b34]
 gi|255651199|ref|ZP_05398101.1| putative lipoprotein [Clostridium difficile QCD-37x79]
 gi|306521046|ref|ZP_07407393.1| putative lipoprotein [Clostridium difficile QCD-32g58]
          Length = 408

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 143/433 (33%), Gaps = 95/433 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V++IGGG AG  AA+ A + G    L          +    AI G G+ ++         
Sbjct: 4   VVIIGGGPAGMIAASTACEKGYDVTL----IEKNHKLGKKLAITGKGRCNITNACEIEEL 59

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRT--QADREL-YRLAMQREI 111
            E    +G     A        V+++      K    RG R   ++D+      A++R++
Sbjct: 60  IENVPTNGKFLYSAFYTFTNDDVISMFNNLGVKTKTERGKRVFPESDKAFDIVNALERQL 119

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKL 167
            S++   ++  +V    ++ N I  +++ D   I+C +VV+ TG     +        K 
Sbjct: 120 KSKKVNILLNSKVEKIISKNNKIEKVILNDKKEIKCDSVVVATGGLSYPLTGSTGDGYKF 179

Query: 168 KIPAGRMGDSPSNSL---------FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
            I  G        SL              K       ++               K +K +
Sbjct: 180 AISQGHTIIDTKPSLIGIEVQESFTKDLEKLSLRNVEIRVFN-----------SKQKKVY 228

Query: 219 ADERLIPFS-FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDI---------- 267
           +D   + F+ F  D    +   C +  T  E + I+++          D           
Sbjct: 229 SDFGELEFTRFGLDGPIIKSASCRMKDTRKENYTILLDLKPALDEEKLDKRVQKDFQKYT 288

Query: 268 -----KSYGPRYCPSIEDKIVRFGERNG----HQIFLEPEGLNTDVVYPNGISTALPEEI 318
                K+        +   I+   E N     HQI  E             +   L   +
Sbjct: 289 NKKFEKALDDLLPKKLIPIIINLSEINANTVVHQISREQ------RKNLVHLLKNLKFTV 342

Query: 319 QHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG----------- 367
           +    R I   E+  I   G  +  + IN      T+E+K + GLF AG           
Sbjct: 343 KR--YRPI---EEAIITSGGVKV--NEINS----STMESKLVEGLFFAGEVIDIDAYTGG 391

Query: 368 ---QINGTTGYEE 377
              QI  +TGY  
Sbjct: 392 FNLQIAFSTGYLA 404


>gi|302389708|ref|YP_003825529.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200336|gb|ADL07906.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 427

 Score = 57.6 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQING-TTGY 375
           +R IPG E      P YA      I Y  ++P+     L+T  +  LF  G+  G   G+
Sbjct: 276 LRKIPGFENARFEDP-YAGDIGNSIRYMAMSPR--DNYLKTLGVENLFCGGEKAGPLVGH 332

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            EA   G +AG N+ R +  ++ +    TD  +G  I  +  +   E
Sbjct: 333 TEAICTGTLAGANAVRYAAGVNLVEIP-TDLAVGDAISYVNEQMKTE 378


>gi|169630487|ref|YP_001704136.1| geranylgeranyl reductase [Mycobacterium abscessus ATCC 19977]
 gi|169242454|emb|CAM63482.1| Probable geranylgeranyl reductase [Mycobacterium abscessus]
          Length = 399

 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YD+ V+GGG AG  AA  AA+ GA   L+  K        C   +      +L +
Sbjct: 1  MSEKHYDIAVVGGGPAGSSAAWQAARTGARVVLVD-KAEFPRDKPCGDGLTARAVSYLQK 59


>gi|313884292|ref|ZP_07818056.1| flavoprotein family protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620480|gb|EFR31905.1| flavoprotein family protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 422

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 145/435 (33%), Gaps = 65/435 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  +Y VIV+GGG +G  AA  AA+ GAS  ++         +     + G G+ ++   
Sbjct: 1   MAETYQVIVVGGGSSGLMAAINAAQQGASVLILEKNRI----LGKKLLLSGGGRCNVTNR 56

Query: 62  IDALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLA 106
               + +      G+   +A  QF   ++    A    + +           DR      
Sbjct: 57  TSQEELIKHIPGNGKFLYSALSQFDQEDIVNFFADHNVQLKEEDHGRMFPITDRSATIRD 116

Query: 107 MQREILSQENLDVIQGE-VAGFNTEK--NIISSIVMQDNSMIRCSTVVLT--------TG 155
              +I  +  + +   E V     ++  N I  +  +      C +++L         TG
Sbjct: 117 ALLDICLELGVTIQTKEPVESLLIDRAANKIQGVHCKSGHDYYCKSLILACGGRAYPGTG 176

Query: 156 TFLRGVIHIGKLKIPAGRMG--DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
               G            R+   ++P  S  +   +       L+  T    D   +    
Sbjct: 177 ATGDGYAWAKAAGHSISRLYPTEAPLYSKDDIIQEGSLKGVALREVTVTLWD---LNHKA 233

Query: 214 TEKQFADERLIPFSFMTDKITNR--QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYG 271
             +   D     F +    I      I   +  T  +T  + ++            ++ G
Sbjct: 234 ICQHTMDMLFTHFGYSGPAILRTSGHINQFLHETGADTANMTIDLQPELNQDQLRDQAEG 293

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL-- 329
            R    +   I  +  +   ++ L    LN  + Y       L  +  +   + +     
Sbjct: 294 QR-DKQVLTIIKAWMPQALARVLLSKIPLNPSLAYKQ-----LSHQEVNSLFQLVKAFPI 347

Query: 330 --------EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---ING-TTGYEE 377
                   EK  +   G  ++   I P     ++ +K + GL+  G+   ING T GY  
Sbjct: 348 SAYKTDPIEKGFVT--GGGVKTSEIQP----DSMASKLLDGLYFCGEFMDINGYTGGYNI 401

Query: 378 AAA--QGLVAGINSA 390
           +AA   G +AG ++A
Sbjct: 402 SAAFITGTIAGRHAA 416


>gi|295400015|ref|ZP_06809995.1| HI0933 family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110736|ref|YP_003989052.1| HI0933 family protein [Geobacillus sp. Y4.1MC1]
 gi|294977794|gb|EFG53392.1| HI0933 family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215837|gb|ADP74441.1| HI0933 family protein [Geobacillus sp. Y4.1MC1]
          Length = 479

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 85/499 (17%), Positives = 151/499 (30%), Gaps = 147/499 (29%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAA-KL-GASTAL--------------ITHKTST----- 40
           +N  YDVIV+G G AG  A      KL GA+  L              +  K        
Sbjct: 1   MNNHYDVIVVGAGPAGIFACYELTLKLPGANVLLIDKGHDIYKRNCPILQKKIEKCPPPA 60

Query: 41  --------IGSMSCNPAIGG-----LGKGHLVREIDALDGLMGRVADAAGIQFRV----- 82
                   + + S     GG      GK ++  E     G M     A+ +   +     
Sbjct: 61  GKKDYAGCVPACSITNGFGGAGAYSDGKFNITSE---FGGWMTDYLPASKVLELIRYVDE 117

Query: 83  LNVKKGPAVRGPR------TQADRELYR------LAMQREILSQENLDV----------- 119
           +N+K G                +R  Y        A  R + +++NL++           
Sbjct: 118 INLKHGATTSLTDPMTEKVKDIERRAYAAGLKLLRAYVRHLGTEQNLEILKSIFEYLHER 177

Query: 120 ----IQGEVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                + EV    TEK    + ++ +V++    +    VV+  G                
Sbjct: 178 IAMRFKTEVDDIITEKTNDGHRVTGVVLKSGETLTAEKVVIAPGRDGSA----------- 226

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI------- 224
                     L     K        +     R++   I+ ++  +   + + I       
Sbjct: 227 ---------WLSKILRKRRLRMINNQVDIGVRVETSNIVMEEINEHLYEGKFIFNTSVGT 277

Query: 225 -PFSFMTDKITNRQIECG--------ITRTNLE-----THRIIMENIKHSAIYSGDIKSY 270
              +F ++   +  +E              + E     T+  ++ + K S  +    +  
Sbjct: 278 QVRTFCSNPSGHVVVENHSGIMLANGHAYKDPELGSNNTNFALLVSHKFSEPFDKPNEYA 337

Query: 271 GP---------------RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
                            +    I     R  E+   + F+EP         P  +   LP
Sbjct: 338 REISRLANALSNGGIIVQKYGDILKG-RRSTEKRIKEGFIEPT---LKEAVPGDLGLVLP 393

Query: 316 EEIQHQFIRTIPGLEKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLA 366
                  I     L  V    PG        Y +E  + + + +L    ET +ISGL++ 
Sbjct: 394 YNTMKSIIEMTEALNHVT---PGIASEHTLFYGVEAKFYSARPKLNDRFET-EISGLYVG 449

Query: 367 GQING-TTGYEEAAAQGLV 384
           G   G T G  +A+A G+ 
Sbjct: 450 GDGAGITRGLAQASACGVW 468


>gi|149013516|ref|ZP_01834148.1| hypothetical protein CGSSp19BS75_12383 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147762837|gb|EDK69789.1| hypothetical protein CGSSp19BS75_12383 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 486

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 30/221 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGHLVR 60
           YDV+VIG G +G  AA  + +LG  T LI  K S IG +  N  +G            V 
Sbjct: 2   YDVVVIGAGSSGALAAIASGRLGLKTCLIE-KGSRIGGVPINTLMGSFANLYFDDSGRVN 60

Query: 61  EIDALDGLMGRVADAAGIQF----RVLNVKKGPAVRGPRTQADRELYRLAMQR----EIL 112
               +  L+ R+ +  G  F     ++NV     +  P        Y+  +      E+L
Sbjct: 61  ASKIVGELIERIIEKGGTVFSSMEELMNVSDFYQITIP--------YQPEVYESVLTEML 112

Query: 113 SQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMI---RCSTVVLTTGTFL---RGVIHIG 165
           ++ N+D++   E+     + N I S+ +  N  +        +  TG          ++ 
Sbjct: 113 NESNVDILLNVEINNIVFDNNKIHSVEIISNQEVNYLESKVFIDATGNATIASASGANVY 172

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTG-RLKTGTPARLD 205
           +     G +       +  +    +       + G    LD
Sbjct: 173 EKNSSYGCLMRVGGVDITKTLEHIEKTKQWEFEEGYNEWLD 213


>gi|255030173|ref|ZP_05302124.1| hypothetical protein LmonL_15781 [Listeria monocytogenes LO28]
          Length = 175

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|312880603|ref|ZP_07740403.1| monooxygenase FAD-binding [Aminomonas paucivorans DSM 12260]
 gi|310783894|gb|EFQ24292.1| monooxygenase FAD-binding [Aminomonas paucivorans DSM 12260]
          Length = 462

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 143/489 (29%), Gaps = 129/489 (26%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTST-IGSMSCNP 48
           + YDVI++G G AG  AA    K G   AL+                     I    CN 
Sbjct: 2   KPYDVILVGAGPAGIFAALELTKAGKRVALVDKGRAIRNRVCPLKEGSVDQCIHCRPCNV 61

Query: 49  AIG-------GLGKGHLVREIDALDG----LMGRV--------ADAAGIQFRVLNVKKGP 89
             G         GK  L  E     G      GRV         D   +       K  P
Sbjct: 62  VCGWGGAGAYSDGKLTLTPE---FGGNLEQYCGRVDLVSLIAEVDRVYVDHGASEEKFVP 118

Query: 90  AVRGPRTQADRELYR---------LAM----QREILS--QENLDVIQGEVAGFNTEKNII 134
                    DR               M     +EILS  +E+L+     +     E  ++
Sbjct: 119 EGTFANQILDRARRAGLEVIPATIRHMGTDRSKEILSRLREDLEGRCDILLDTPVEDVLV 178

Query: 135 S-----SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
                  + + D +++   TV+L  G                          + ++  + 
Sbjct: 179 KDGRAAGVRLGDGTLLAADTVLLAPGREGAA--------------------WMEDTVRRL 218

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQF-----------ADERLIPFSFMTDKITNRQI 238
                 L      R++           QF            D+R+  F    +     + 
Sbjct: 219 GLSIESLPVDIGVRVEIPAAWAKDITDQFYEIKAILDTPTFDDRVRTFCMCPNGEVTTEY 278

Query: 239 ECGI-------------TRTNLETHRIIMENIKHSAIYSGDIKSYG---PRYCPSIEDKI 282
           +                 R    T+  I+ + + +  +      YG    R    + D +
Sbjct: 279 QTHHDILTVNGHSNRDEGRKTENTNFAILVSTQFTKPFKDP-NGYGSHVARLANMLGDTV 337

Query: 283 V--RFGERNG---------HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT------ 325
           +  R G+             +  + P  L T    P  +S  LP       +        
Sbjct: 338 LVQRLGDLKRGRRSTADRIARGLVRP-TLKTAE--PGDLSFVLPYRHLVGILEMLAALDP 394

Query: 326 -IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGL 383
            +PG+   + +  G  ++  Y     L  TLET  I GLF AG   G T G  +A+A GL
Sbjct: 395 LMPGINGNHTLLYGVEVK-FYSLKLALASTLET-SIPGLFAAGDGAGVTRGVIQASASGL 452

Query: 384 VAGINSARK 392
            A     R+
Sbjct: 453 WAARAMLRR 461


>gi|21228713|ref|NP_634635.1| hypothetical protein MM_2611 [Methanosarcina mazei Go1]
 gi|20907221|gb|AAM32307.1| hypothetical protein MM_2611 [Methanosarcina mazei Go1]
          Length = 487

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 146/464 (31%), Gaps = 90/464 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAA--AVAAKLGASTALITHKTSTIGS--------MSCNP--- 48
           I  +YDV++IG G AG  AA    A K+      +                   C P   
Sbjct: 15  IKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPMKALSYCKHCAPCEI 74

Query: 49  --AIGGLG---KGHLVREIDALDGLMGRVADAAGIQFRVLNVKK----GPAVRGP----- 94
              +GG G    G L    D    L     D       V  V K      A +       
Sbjct: 75  MCGVGGCGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVFLKFGAPQTALLTEG 134

Query: 95  --------RTQADRELYRLAMQREI-----------LSQENLD-----VIQGEVAGFNTE 130
                   R  +    +    QR I             Q+ +D     +I+ EV     E
Sbjct: 135 PEVEELKRRAASVGARFIEIKQRHIGSDNAPALIGRFKQDLVDKGVDFLIETEVHDLLIE 194

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                 +++    +IR + V+L+ G     ++  +I    LK   G +       +    
Sbjct: 195 GKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYGGIDIGVRVEVPAII 254

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKT-------------EKQFADERLIPFSFMTDKI 233
           M         K     +   ++  +D               ++++ D        M +K 
Sbjct: 255 MD-----PVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIATNGHSMANKE 309

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           +       + R  +E    +    K++   +    + G           +R G R+  + 
Sbjct: 310 SENTNFAFLVR--IELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRGRRSTKER 367

Query: 294 FLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
                 +NT   V P  IS ALP  I       I GLE +N I PG A +   +   E+ 
Sbjct: 368 LARNLVINTLKDVTPGDISMALPHRIVMDI---IEGLETLNEIIPGVASDSTLLYAPEVK 424

Query: 353 ---------PTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
                      +ET  I  LF AG   G +     AAA G++A 
Sbjct: 425 FYAMHLDVDRHMET-SIKNLFAAGDGAGLSRDIVNAAATGIMAA 467


>gi|15055554|gb|AAG38844.2| putative halogenase [Xanthomonas oryzae pv. oryzae]
          Length = 414

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS------MSCNPAIGGLGK-- 55
           DV+++GGG AGC AA   A+LG S  L+    H    IG       M     +G L    
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 85

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L R  D  +   G            L+ K   A + PR Q D+ L++ A    + +
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRF---SHALDAKADFAFQVPRAQFDQVLFQRARAAGVDA 142

Query: 114 QENLDVIQ 121
           +E + V Q
Sbjct: 143 REQVSVEQ 150


>gi|251780183|ref|ZP_04823103.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084498|gb|EES50388.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 425

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLE    + P YA      I Y  + P+     L+   +  LF AG
Sbjct: 265 MTTYYPLEKLRKIKGLEYAKYVDP-YAGSKGNSIRYLSVAPR--TNDLKVVGVDNLFCAG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + +G   G+ EA   G +AG N+ R    +  +    + + +G +I     K  
Sbjct: 322 EKSGLFVGHTEAICTGTLAGHNAVRLIMGMSLLILPSSIT-VGDIISFANEKAN 374


>gi|255018808|ref|ZP_05290934.1| hypothetical protein LmonF_15736 [Listeria monocytogenes FSL
           F2-515]
          Length = 169

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEVI 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVG 164


>gi|188590534|ref|YP_001921471.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188500815|gb|ACD53951.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 425

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLE    + P YA      I Y  + P+     L+   +  LF AG
Sbjct: 265 MTTYYPLEKLRKIKGLEYAKYVDP-YAGSKGNSIRYLSVAPR--TNDLKVVGVDNLFCAG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           + +G   G+ EA   G +AG N+ R    +  +    + + +G +I     K  
Sbjct: 322 EKSGLFVGHTEAICTGTLAGHNAVRLIMGMSLLILPSSIA-VGDIISFANEKAN 374


>gi|224542231|ref|ZP_03682770.1| hypothetical protein CATMIT_01406 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524866|gb|EEF93971.1| hypothetical protein CATMIT_01406 [Catenibacterium mitsuokai DSM
           15897]
          Length = 473

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 87/494 (17%), Positives = 142/494 (28%), Gaps = 139/494 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAA--VAAKLGASTALI----------THKTSTI-------- 41
           +  +YDVIV+G G AG  A+   V      S  LI                         
Sbjct: 1   MRENYDVIVVGAGPAGIMASYEFVLKNPNLSVLLIDKGRAVTARHCPIKDKKIKQCPVIK 60

Query: 42  -GSMSCNPA------IGG-----LGKGHLVREIDALDGLM-----GRVADAAGIQFRVLN 84
                C PA       GG      GK ++  E     G +         +        L 
Sbjct: 61  DNEPGCLPACSITCGFGGAGAYSDGKFNITSE---FGGWLTDYLPANEVEDVIRYVDSLY 117

Query: 85  VKKGPAVRGPRTQADREL------YR------LAMQREILSQENLDVIQG---------- 122
           +K G          D+        Y        A  R + ++ENL ++            
Sbjct: 118 LKHGATKDITDPTTDKVKEIEHRGYAVGLKLLRAKVRHLGTEENLRIMTEMQETLKEHID 177

Query: 123 -----EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                EV     E N I  I +    +I  S V+L                   GR    
Sbjct: 178 IQFNTEVEDIIVEDNTIKGIKLAKGDIITASKVLLAP-----------------GRD--- 217

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
            +  L   F K   D    +     R++   I+ D+  K   + + I  + +  ++   +
Sbjct: 218 GATWLDAIFKKHGLDLYNNQVDIGVRVETSNIVMDEINKNLYEGKFIYNTSVGTRV---R 274

Query: 238 IEC-----GITRTNLETHRIIMENIKHSAIYSGD----------IKSYGPRYCPSIEDKI 282
             C      +   N E   +   +  H      D          + S           ++
Sbjct: 275 TFCSNPSGHVVIENHEGTMMANGHAYHDPKLGSDNTNFALLVSHVFSEPFNQPNEFAHQV 334

Query: 283 VRFGER--NGHQIFLE----PEGLNTDVVY--------------PNGISTALPEEIQHQF 322
            +   +  NG  I        +G  T                  P  +   LP       
Sbjct: 335 AQLANKLSNGSIIVQRYGDIKKGRRTTEKRLKEGYTVPTLPEAVPGDLGLVLPYNTMKSI 394

Query: 323 IRTIPGLEKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-T 372
           +  I  L+ V    PG        Y +E  + + + ++    ET  + GL++AG   G T
Sbjct: 395 VEMIEALDHVT---PGIANEHTLLYGVEAKFYSARPKVREGFET-LVDGLYVAGDGAGLT 450

Query: 373 TGYEEAAAQGLVAG 386
            G  +A A G++  
Sbjct: 451 RGLAQAGANGILVA 464


>gi|322376950|ref|ZP_08051443.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           M334]
 gi|321282757|gb|EFX59764.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           M334]
          Length = 396

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 139/424 (32%), Gaps = 76/424 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 8   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 63

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREI 111
             D L      GR   +   QF   ++       G + + +              +   +
Sbjct: 64  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTIIEAL 123

Query: 112 LSQENLDVIQGEV----AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             +  +  + G+V       + +K     ++   N    C  +++TTG            
Sbjct: 124 EKK--ITELGGQVATQTEIVSVKKVDDQFVLKSTNQTFTCDKLIVTTGG------KSYPS 175

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 176 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 223

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S E+ +  F E
Sbjct: 224 YSKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPHLS-ENDLTTFLE 276

Query: 288 RNGHQIFLE------PEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN------ 333
            N  +          PE L   +V  YP+ +   L E+ + Q +++I  L+         
Sbjct: 277 ENREKSLKNALKTLLPERLAEFLVQGYPDKVK-QLTEKEREQLLQSIKALKISVTGKMSL 335

Query: 334 ---IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLV 384
               +  G  +    INPK    TLE+K ++GL  AG+   IN  TG      A   G V
Sbjct: 336 AKSFVTKG-GVSLKEINPK----TLESKLVTGLHFAGEVMDINAHTGGFNITSALCTGWV 390

Query: 385 AGIN 388
           AG N
Sbjct: 391 AGSN 394


>gi|302388540|ref|YP_003824362.1| glucose-inhibited division protein A [Clostridium saccharolyticum
          WM1]
 gi|302199168|gb|ADL06739.1| glucose-inhibited division protein A [Clostridium saccharolyticum
          WM1]
          Length = 453

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +YDV+VIGGG AG  AA  +A+ GA T L+       G +     + G G
Sbjct: 6  NYDVVVIGGGPAGTSAAIASARNGARTLLVEQN----GCLGGMLTMAGTG 51


>gi|322386202|ref|ZP_08059835.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           cristatus ATCC 51100]
 gi|321269782|gb|EFX52709.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           cristatus ATCC 51100]
          Length = 393

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 139/422 (32%), Gaps = 72/422 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGK 166
           E L+    E+ G       I S+   D        +    C  +++TTG           
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDELFTVRSSDQTWTCQKLIVTTGG------KSYP 168

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                G   D            F      L+      L      +     Q      +  
Sbjct: 169 STGSTGFGHDIA--------RHFKHTVTDLEAAESPLL----TDFPHKALQGISLDDVTL 216

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           S+    IT+  +      +     R+    +K       D+         ++ D +    
Sbjct: 217 SYGKHVITHDLLFTHFGLSGPAALRL-SSFVKGGETIYLDLLPQ--MSQQALADILEEHR 273

Query: 287 E---RNGHQIFLEPEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN-------- 333
           E   +N  +  L PE L    V  YP  +   L E+ + Q +++I  LE           
Sbjct: 274 EKSLKNALKTLL-PERLADFFVQGYPEKVK-QLTEKERDQLVQSIKALEIPVTGKMSLAK 331

Query: 334 -IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
             +  G  I    INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 332 SFVTKG-GISLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386

Query: 387 IN 388
            N
Sbjct: 387 SN 388


>gi|302391832|ref|YP_003827652.1| thioredoxin reductase [Acetohalobium arabaticum DSM 5501]
 gi|302203909|gb|ADL12587.1| thioredoxin reductase [Acetohalobium arabaticum DSM 5501]
          Length = 397

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVI++GGG AG  A   A++    T L+               +GG  K +   E
Sbjct: 1   MSKEYDVIIVGGGPAGLSAGMYASRSKLDTLLLE-----------TGDVGGQPKSY--EE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++   G++    DA+  +                     E ++   Q         ++ +
Sbjct: 48  MENYPGVL----DASAPELV-------------------ENFKEHAQEF-----GTEIKE 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           GEV   + +   + ++  ++    +  +++L TG 
Sbjct: 80  GEVKEIDADGF-VKTVTTKEGVEYKAKSIILATGA 113


>gi|52081503|ref|YP_080294.1| hypothetical protein BL00067 [Bacillus licheniformis ATCC 14580]
 gi|52786881|ref|YP_092710.1| YtfP [Bacillus licheniformis ATCC 14580]
 gi|52004714|gb|AAU24656.1| conserved protein YtfP [Bacillus licheniformis ATCC 14580]
 gi|52349383|gb|AAU42017.1| YtfP [Bacillus licheniformis ATCC 14580]
          Length = 424

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----- 58
           + +DVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++     
Sbjct: 2   KYFDVIVIGGGPSGLMAAIAAGEQGADVLL----IDKGNKLGRKLAISGGGRCNVTNRLP 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQ 108
           V EI       GR   +A  +F   ++ K     G + +          +D+    +   
Sbjct: 58  VDEIIRHIPGNGRFLYSAFSEFNNEDIIKFFERLGVKLKEEDHGRMFPVSDKAQSVVDAL 117

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              L Q ++ V   E V      +     IV      I   +VV+  G
Sbjct: 118 LTRLEQLHVSVRTNEKVKTVLYNEEKACGIVTGSGEEIAAGSVVIAVG 165


>gi|300312147|ref|YP_003776239.1| electron transfer flavoprotein [Herbaspirillum seropedicae SmR1]
 gi|300074932|gb|ADJ64331.1| electron transfer flavoprotein [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 22/169 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   +D IV+G G +G   A   AK G        +             G +     +  
Sbjct: 1   MTEKFDAIVVGAGPSGNACAYTMAKAGLKVL----QIERGEYPGSKNVQGAILYSDALER 56

Query: 61  -----------EIDALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                      E   ++  M  + D +  G  +R  +  K P     R    R  +    
Sbjct: 57  IIPDFREDAPLERHIIEQRMWVLDDQSFIGGHYRSEDFNKPP---YNRYTIIRAQFDKWF 113

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
            +++     L + +  V     +   +  +        I    VVL  G
Sbjct: 114 SQKVQEAGALLICETTVTDLLMDGQRVVGVQTDRVGGSIYADIVVLADG 162


>gi|116511080|ref|YP_808296.1| flavoprotein [Lactococcus lactis subsp. cremoris SK11]
 gi|116106734|gb|ABJ71874.1| Predicted flavoprotein [Lactococcus lactis subsp. cremoris SK11]
          Length = 424

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----L 58
           +++DVIV+G G +G  AA  AA+ GA  AL          +     + G G+ +      
Sbjct: 6   KTFDVIVVGAGPSGMMAAISAAENGAKVAL----IDKNKKVGKKLLMTGGGRCNVTNSRS 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELY-RLAM 107
           V EI A     GR   +A  QF  L++       G + +           D+      A+
Sbjct: 62  VDEILANVPGNGRFLHSAFSQFSNLDIINFFESNGVKLKEEDHGRMFPLTDKSKTIVDAL 121

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +ILS          V+    E   I  +   D+      T+VL+TG
Sbjct: 122 FNKILSLHVSYFPSQPVSQLIIENGAIVGLET-DSESYLSPTIVLSTG 168


>gi|217963930|ref|YP_002349608.1| hypothetical protein LMHCC_0638 [Listeria monocytogenes HCC23]
 gi|217333200|gb|ACK38994.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
 gi|307571500|emb|CAR84679.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 421

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            YDVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFEKLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M + +        +Q  V   + E   +  + ++D   I  S V++  G
Sbjct: 116 MIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISTSAVIVAVG 164


>gi|144899882|emb|CAM76746.1| Electron-transferring-flavoprotein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 432

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 18/167 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTS-TIGSMSCNPAIGGL 53
           +   +D IVIG G +G  AA V A+ G     +       +      I        I   
Sbjct: 1   MAEKFDAIVIGAGPSGNAAALVMARAGMKVLQLERGEYPGSKNVQGAILYAEALEQIIPN 60

Query: 54  GKGHLVREIDALDGLMGRVADAA--GIQFRVLNVKKGPAVR--GPRTQADRELYRLAMQR 109
            +     E   ++  M  + D +  G  +R    K  P  R    R   DR + + A   
Sbjct: 61  CRRQAPLERPIIEQRMWVLDDESYVGSNYRGTKKKDEPPTRYTVIRANIDRWMSKKATDA 120

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG 155
            +     L + +  V     +   +  +   +    I    VVL  G
Sbjct: 121 GV-----LLICEATVLDLIKQDGKVVGVRTDRLGGDILADVVVLADG 162


>gi|311279775|ref|YP_003942006.1| FAD dependent oxidoreductase [Enterobacter cloacae SCF1]
 gi|308748970|gb|ADO48722.1| FAD dependent oxidoreductase [Enterobacter cloacae SCF1]
          Length = 428

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 30/173 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AGC AA V A+ GA   L         S       GG    H + 
Sbjct: 1   MSEDVFDAIIVGAGLAGCVAALVLAREGAQVLL----IERGNSAGGKNVTGGRMYAHSLE 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA------DRELYRLAMQREILSQ 114
               + G             RV+  +K   + G R         D           + S+
Sbjct: 57  --RIIPGFA-----ETAPVERVITREKLSFLSGSRAMTVDYQSGDERHPGEVSWSVLRSK 109

Query: 115 ENLDVIQGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +  +++              V     +   +  +   D  ++   TV+L  G
Sbjct: 110 FDAWLMEQAENAGAQCITGIRVDRLVEKDGRVIGVE-ADGDVLEAKTVILADG 161


>gi|242279342|ref|YP_002991471.1| glucose-inhibited division protein A [Desulfovibrio salexigens DSM
           2638]
 gi|242122236|gb|ACS79932.1| glucose-inhibited division protein A [Desulfovibrio salexigens DSM
           2638]
          Length = 429

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 138/415 (33%), Gaps = 61/415 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG +GC AA  A K  +   L+      +G       +   G+     E+  L  
Sbjct: 4   IIVIGGGWSGCAAALAARKNNSQVILLERTDLLLGCGLAGGIMRNNGRYTAAEELRQLGA 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VA 125
           G + +  D A     +       A     ++ +  +      R +L+++++D+     VA
Sbjct: 64  GELIKATDRAATHVDIDFPGHEHATLYSTSKVESSV------RRLLTEKSIDLRFISRVA 117

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-GVIHIGKL--KIPAGRMGD-SPSNS 181
                   + ++ + DN +++    +  TG+    G  H       +   R     P  S
Sbjct: 118 DIQCSDGYVQAVKLADNKLVKGDVFIDCTGSAGSMGNCHRYGTGCAMCMLRCPSFGPRIS 177

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L +  M      G  + G    L G                 I    +++ I     + G
Sbjct: 178 LTDR-MGIKDIVGMRQDGAIGSLSGSC--------------EIRKESLSEDIQLELKQSG 222

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
           ++ T     ++I E++ +             R    ++          GH   + P    
Sbjct: 223 VSVT-PLPEQLIHESMLNKKSCRQYALPDFARNIVLLDTG--------GHAKMMTP---- 269

Query: 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---IEYDYINPKELFPTLETK 358
               Y        P +     +R +PG               + +    P+     ++  
Sbjct: 270 ----Y-------FPIDK----LRMVPGFTDALYSHGSSMANSVRFLSRAPR--NDLMKVT 312

Query: 359 KISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
             + LF  G+ +G   G+ EA   G +AG N+A   N  + +   R  +   ++ 
Sbjct: 313 GTNNLFCGGEKSGFFVGHTEAMVTGTLAGYNAAALINDEEQMHLPRELACGDIIA 367


>gi|167622158|ref|YP_001672452.1| FAD dependent oxidoreductase [Shewanella halifaxensis HAW-EB4]
 gi|167352180|gb|ABZ74793.1| FAD dependent oxidoreductase [Shewanella halifaxensis HAW-EB4]
          Length = 429

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   S+D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MSEESFDAIIVGAGLAGCVAAYVLAKEGADVLV----IERGNFAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG--PRTQADRELYRLA 106
                       E       +  + D  G+     N ++  + +      + D + + + 
Sbjct: 57  KIIPGFAKEAPIERKVTKEKVTFLTDDTGVTLDYHNGREQNSTQESYTLLRGDFDQWLMG 116

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              E+ +Q    +    V    T+   +  +   D   +   +V+L  G
Sbjct: 117 KAEEVGAQFITGIR---VEEILTQDGKVIGVK-ADGDELTAKSVILAEG 161


>gi|148265578|ref|YP_001232284.1| FAD dependent oxidoreductase [Geobacter uraniireducens Rf4]
 gi|146399078|gb|ABQ27711.1| FAD dependent oxidoreductase [Geobacter uraniireducens Rf4]
          Length = 432

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL-----ITHKTSTIGS-MSCNPAIGGL-- 53
           +++ Y  IV+G G AG  AA   A+ G   AL        + +  G  +    +I  L  
Sbjct: 1   MSKQYQAIVVGAGPAGSSAALTMARAGLDVALVERGTFPGEKNMFGGILHRMTSIEELMP 60

Query: 54  ---GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQ 108
               K  L R I            +  +Q    N  + P       R + DR L   A++
Sbjct: 61  DFWTKAPLERHIAKKGTTFMTAEASFNVQHETTNFDRAPYNGYTVFRPRFDRWLAEEAVK 120

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTGTF 157
                     + +  V     + + I+ + ++     I+   V+   G  
Sbjct: 121 AGA-----TLITRSTVDDLIYKNDRIAGVSILGRTGQIKAPVVIAADGVL 165


>gi|281357525|ref|ZP_06244013.1| HI0933 family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316128|gb|EFB00154.1| HI0933 family protein [Victivallis vadensis ATCC BAA-548]
          Length = 409

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+D+ VIGGG AG  AA  AA+ G +  +       + S        G GK +L   ++ 
Sbjct: 6   SFDLAVIGGGPAGLMAACTAAERGRTVVV----LEYLPSPGRKLLTSGAGKCNLTNVLEP 61

Query: 65  LDGLMGRVADAAGIQFRVLNV------KKGPAVRGPRTQA-DRELY---RLAMQREILS- 113
            D +  R A  A      L        ++  A RG  T   D   Y       +  + + 
Sbjct: 62  -DEMAARFACNAHRILPALRALPPSALRRWFARRGVPTGCKDGFHYFPVSERARDVLEAL 120

Query: 114 -----QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIH 163
                +  +    G  V     +   ++ +   D+  IR   V++ TG      L G   
Sbjct: 121 LAEAQRHGVRFYSGSPVRELLLDGGAVAGVRT-DSLEIRAPRVLVATGGNGYPALGGRGS 179

Query: 164 IGKLKIPAGRMGDSPSNSL 182
             +L   AG    +P  +L
Sbjct: 180 GYELARQAGHAVLTPVPAL 198


>gi|84625728|ref|YP_453100.1| hydroxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369668|dbj|BAE70826.1| hydroxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 449

 Score = 56.9 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS------MSCNPAIGGLGK-- 55
           DV+++GGG AGC AA   A+LG S  L+    H    IG       M     +G L    
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 73

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L R  D  +   G            L+ K   A + PR Q D+ L++ A    + +
Sbjct: 74  AIGVLKRGADFPNDSGGYNTFRF---SHALDAKADFAFQVPRAQFDQVLFQRARAAGVDA 130

Query: 114 QENLDVIQ 121
           +E + V Q
Sbjct: 131 REQVSVEQ 138


>gi|58583944|ref|YP_202960.1| hydroxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188574732|ref|YP_001911661.1| hydroxylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428538|gb|AAW77575.1| hydroxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188519184|gb|ACD57129.1| hydroxylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 461

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS------MSCNPAIGGLGK-- 55
           DV+++GGG AGC AA   A+LG S  L+    H    IG       M     +G L    
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKEQHPRFHIGESLLPMNMPILERLGVLADVR 85

Query: 56  --GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             G L R  D  +   G            L+ K   A + PR Q D+ L++ A    + +
Sbjct: 86  AIGVLKRGADFPNDSGGYNTFRF---SHALDAKADFAFQVPRAQFDQVLFQRARAAGVDA 142

Query: 114 QENLDVIQ 121
           +E + V Q
Sbjct: 143 REQVSVEQ 150


>gi|326329748|ref|ZP_08196069.1| putative flavoCytochrome c [Nocardioidaceae bacterium Broad-1]
 gi|325952513|gb|EGD44532.1| putative flavoCytochrome c [Nocardioidaceae bacterium Broad-1]
          Length = 440

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 79/269 (29%), Gaps = 31/269 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ S D++VIGGG AG  AAA A++ G    ++   +   GS      I       ++ E
Sbjct: 1   MDLSPDLLVIGGGMAGLTAAARASRDGQRVTVVEVSSDVGGSGRFAGYIWTAPTDAVMDE 60

Query: 62  IDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRT-------QADRELYRLAMQREIL 112
            +       + A  +        +      A    R          D   Y    +R + 
Sbjct: 61  QNPGGDEALKRALVERFDAAVDWIRSTGVEAGASQRILSFGQGHGFDTNQYVDTCRRMVT 120

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIV----MQDNSMIRCSTVVLTTGTF----------- 157
                 ++         +   ++         +   IR  T VL TG F           
Sbjct: 121 ESGGQVLLSTTTEELLVDHGAVAGARLRLPTDEVVEIRARTTVLATGGFQADPEMREKLL 180

Query: 158 ---LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
                 +            +  + +        +  F    + +G P +  G  +     
Sbjct: 181 GPGAGALRLRSNPNSRGDGLRLATAVGAATGLERAGFYGHLVPSGVPFKDSGDFVDLSLY 240

Query: 215 EKQFADERLIPFSFMTDKITNRQIECGIT 243
             + A    + F+   ++  +  +   +T
Sbjct: 241 YSEHA----LLFNLDNERFVDETLGDHLT 265


>gi|115402319|ref|XP_001217236.1| hypothetical protein ATEG_08650 [Aspergillus terreus NIH2624]
 gi|114189082|gb|EAU30782.1| hypothetical protein ATEG_08650 [Aspergillus terreus NIH2624]
          Length = 489

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 20/149 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           D+I++GGG AGC AA    K G    L          +      P    A+  LG G  +
Sbjct: 32  DIIIVGGGVAGCSAAVAFGKQGRRVLLFEKSLKEPDRVSGELLQPGGVKALNRLGLGTCL 91

Query: 60  REIDA------LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             IDA           G  A     Q         P  R          +   +++E ++
Sbjct: 92  EGIDAVPCYGYWVSYKGESA-----QIPYPERADRPGTREEGRSFRHGKFVQKLRQEAMN 146

Query: 114 QENLDVIQGEVAGFNTE--KNIISSIVMQ 140
             N+ VI+ +V     +     +  ++ +
Sbjct: 147 TANVTVIESKVKDVIRDWTGARVLGVITE 175


>gi|218887720|ref|YP_002437041.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218758674|gb|ACL09573.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 463

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 150/469 (31%), Gaps = 106/469 (22%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAK-LGASTALI---------------THKTSTIGSMSC 46
           +  +DVIV+GGG AG  AA   A+  G  T LI               T K         
Sbjct: 5   SNQFDVIVVGGGPAGLFAAYHLAEHSGLRTCLIERGQDVRKRSCPINKTQKCLKCKPCHI 64

Query: 47  NPAIGG-----LGKGHLVREIDALDG--LMGRVADAAGIQ-FRVLNVKKG---------- 88
              +GG      GK + + ++   D    M R      I     +  + G          
Sbjct: 65  LSGMGGGGLFSDGKLNFIHKLGKTDLTQFMPRSEAETLIHETETIFNRFGMDGPVYPSDM 124

Query: 89  PAVRGPRTQADRE------------------LYRLAMQREILSQENLDVIQG-EVAGFNT 129
            A +  R QA +                    +  +M   I   + +D+  G EV     
Sbjct: 125 EAAKAIRKQAKKHGIDLLLIKQKHLGSDCLPDHIASMCAHIRD-KGVDIRTGEEVRTLTV 183

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           E   +  +V        C  V++  G    G   +G+L    G        ++    ++ 
Sbjct: 184 ENGAVRGLVTDKG-EYACKAVIIAPGRV--GADWVGELARGHG-------LAVSQRGIEV 233

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI----TNRQIEC----- 240
                  K       D         +    D++   F    +        +   C     
Sbjct: 234 GVRVEVHKDIMSDITDVIYDPTFFVQTDKYDDQTRTFCTNPEGFIALENYQDFVCVNGHA 293

Query: 241 GITRTNLETHR------IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--RNGHQ 292
              R +  T+       ++ + +  +  Y   I              + RFG+  R    
Sbjct: 294 YRHRKSENTNFAFLSKVVLTDPVSDNQGYGTAIGRLATIIGGGKPI-LQRFGDLRRGRRS 352

Query: 293 IF-------LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
            +       +EP    T+VV P  I+ ALPE I       + GLE++N + PG A E   
Sbjct: 353 TWNRINKGYIEPT--MTNVV-PGDIAMALPERI---VTNLVEGLEQLNNVMPGIANEETL 406

Query: 346 INPKELF---------PTLETKKISGLFLAGQINGTTGY-EEAAAQGLV 384
           +   E+            LET  + GLF+AG   G  G    AAA GL+
Sbjct: 407 LYAPEIKFFATQVETDNRLET-SLKGLFVAGDGPGVAGNIVSAAATGLI 454


>gi|1730742|sp|P54805|YNH2_METBA RecName: Full=Uncharacterized protein in nifH2 5'region; AltName:
           Full=ORF186
 gi|984851|gb|AAA96016.1| orf186 [Methanosarcina barkeri]
          Length = 186

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREI- 62
           SYDV+V+G G AG  AA  AAK GAS  L+  K      + C   +    +   L+RE  
Sbjct: 6   SYDVVVVGAGPAGSTAAMYAAKNGASVLLLDKKREIGSPIQCAGFLPDASEVQALLREAM 65

Query: 63  ------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                 +  D  + +  D   I F      K  AVRG     DR  Y   +  +      
Sbjct: 66  LPDTLKNYPDSCVLQRIDNQRI-FTPNCNIKEFAVRG--AVLDRCRYDQFLAEQAARAGA 122

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +I+  V          S +  +    I+   ++   G
Sbjct: 123 ELMIKTRVTKIEGTTVETSGVFGK--YRIKAKAIIGADG 159


>gi|309389254|gb|ADO77134.1| HI0933 family protein [Halanaerobium praevalens DSM 2228]
          Length = 404

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VI+IGGG AG  AA  AAK      LI    +    +     I G G+ +L    D L+ 
Sbjct: 4   VIIIGGGPAGMMAALRAAKNQNEVFLIEKNKN----LGKKLLITGKGRCNLTNYSD-LNN 58

Query: 68  LMGRVADAAGIQFRVL-----------NVKKGPAVRGPRTQADRELYR--------LAMQ 108
            +  + D     +  L               G  ++  R   DR   +          +Q
Sbjct: 59  HIKNIVDQPEFMYSSLAEFDAYRLYYFFEGLGLKLKIERG--DRVFPKSNRSQSVLRVLQ 116

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +E+   E + +I  +V    TE      + ++    ++   ++L  G
Sbjct: 117 KELYKNE-VKIITDQVIEILTEAQTAVGVKLKFGGQLKADKIILAAG 162


>gi|307353164|ref|YP_003894215.1| hypothetical protein Mpet_1010 [Methanoplanus petrolearius DSM
           11571]
 gi|307156397|gb|ADN35777.1| HI0933 family protein [Methanoplanus petrolearius DSM 11571]
          Length = 417

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 132/404 (32%), Gaps = 67/404 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVI++GGG AG   A  +A  G    +         S      I G G+ +L  E + 
Sbjct: 12  KFDVIIVGGGPAGLFCAIHSAGEGKKVLI----LEKKTSCGRKLLITGSGQCNLTHEGEI 67

Query: 65  LD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +        GR    A + F   ++      RG   + D+        ++     ++ +
Sbjct: 68  SEFLSHYNNTGRFLRPALMNFTNKDLVDFFVKRGVSFETDKNGKIFPSTKKASDILSVLL 127

Query: 120 IQGEVAG---------FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            + EV G          + +       +    +      +V++TG               
Sbjct: 128 RECEVRGVSIRCGEPVLSVKNEETGFNIETTLAKYYSKNLVVSTGGA------SYPQTGS 181

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
           +G        SL  +  +               +   +  +        +   I      
Sbjct: 182 SGDGYKIAE-SLSQTVTEIAPALAP--------VYPSSYPFGSLSGISFNNARISLFRDN 232

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            KI +   +  +T   L    I+  +     +   D+         + E+    F ++  
Sbjct: 233 KKIADHTGDILLTHKGLSGPGILDFSRNILPV---DVLKISFMTGMNPEEFRKDFTQKTD 289

Query: 291 HQ-------IFLE---PEGLNTDVVYPNGIS-----TALPEEIQHQFIRTIP-------- 327
                    I  E   PE    +++  +GIS       LP++ ++  I+++         
Sbjct: 290 LGGTKLVRTILSEYSLPERFAREIIEISGISPDLTCAHLPKKERNVLIKSLTEYPFEVRE 349

Query: 328 --GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
               ++  + R G A+E   INPK    T+E+K + GLF  G+I
Sbjct: 350 LGKFDEAMVTRGGVALE--GINPK----TMESKIVPGLFFVGEI 387


>gi|261418148|ref|YP_003251830.1| HI0933 family protein [Geobacillus sp. Y412MC61]
 gi|319767892|ref|YP_004133393.1| HI0933 family protein [Geobacillus sp. Y412MC52]
 gi|261374605|gb|ACX77348.1| HI0933 family protein [Geobacillus sp. Y412MC61]
 gi|317112758|gb|ADU95250.1| HI0933 family protein [Geobacillus sp. Y412MC52]
          Length = 436

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--D 63
           YDVI+IGGG +G  AA  A + GA   L          +    AI G G+ ++   +  D
Sbjct: 3   YDVIIIGGGPSGLMAAIGAGEEGAKVLL----LEKGTKLGRKLAISGGGRCNVTNRLPVD 58

Query: 64  ALDGLMGRVADAAGIQFRVLNVKK--------------------GPAVRGPRTQADRELY 103
            +   +          F V N +                      P     ++  D    
Sbjct: 59  EMVRHIPGNGRFLYSAFSVFNNEDIIRFFERLGVPLKEEDHGRMFPKSDSAQSVVD---- 114

Query: 104 RLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             A+ RE+ S+  +DV  +  VA    E+     + ++    I    VV+  G
Sbjct: 115 --ALVREL-SRLGVDVRLESPVADVLYEQGKTVGVTLKSGETIHARAVVVAVG 164


>gi|56421371|ref|YP_148689.1| hypothetical protein GK2836 [Geobacillus kaustophilus HTA426]
 gi|56381213|dbj|BAD77121.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 436

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--D 63
           YDVI+IGGG +G  AA  A + GA   L          +    AI G G+ ++   +  D
Sbjct: 3   YDVIIIGGGPSGLMAAIGAGEEGAKVLL----LEKGTKLGRKLAISGGGRCNVTNRLPVD 58

Query: 64  ALDGLMGRVADAAGIQFRVLNVKK--------------------GPAVRGPRTQADRELY 103
            +   +          F V N +                      P     ++  D    
Sbjct: 59  EMVRHIPGNGRFLYSAFSVFNNEDIIRFFERLGVPLKEEDHGRMFPKSDSAQSVVD---- 114

Query: 104 RLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             A+ RE+ S+  +DV  +  VA    E+     + ++    I    VV+  G
Sbjct: 115 --ALVREL-SRLGVDVRLESPVADVLYEQGKTVGVTLKSGETIHARAVVVAVG 164


>gi|127513607|ref|YP_001094804.1| FAD dependent oxidoreductase [Shewanella loihica PV-4]
 gi|126638902|gb|ABO24545.1| FAD dependent oxidoreductase [Shewanella loihica PV-4]
          Length = 430

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V AK GA   +                 GG    H + 
Sbjct: 1   MSEEAFDAIIVGAGLAGCVAAYVLAKEGADVLV----IERGNYAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D  G+     N +    ++      R + D+ L  
Sbjct: 57  RIIPGFAKEAPIERKVTKEKVTFLTDDTGVTLDYHNGRDQSPLQESYTLLRGEFDQWLMG 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E+ +Q    +    V    T+   +  +   D   +    V+L  G
Sbjct: 117 KA--EEVGAQFITGIR---VDEILTQDGKVIGVK-ADGDELTAKAVILAEG 161


>gi|146298043|ref|YP_001192634.1| FAD dependent oxidoreductase [Flavobacterium johnsoniae UW101]
 gi|146152461|gb|ABQ03315.1| FAD dependent oxidoreductase [Flavobacterium johnsoniae UW101]
          Length = 519

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 28/184 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPAIGG 52
           +VIV+G G AG  AA    +LG    ++                    I +   N   G 
Sbjct: 85  EVIVVGAGPAGLFAALQLIELGLKPIVLERGKDVRGRRRDLKAINREHIVNEDSNYCFGE 144

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREI 111
            G G         DG +   +   G   R+L +     A      +A   +    + + I
Sbjct: 145 GGAGT------YSDGKLYTRSKKRGDVTRILELLVAFGASEDILVEAHPHIGTNKLPKII 198

Query: 112 LSQEN-------LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
               N         +    V     + N +  IV Q+   I  + ++L TG   R +  +
Sbjct: 199 EDIRNKIIEFGGEVLFDTRVTDILVKNNEVEGIVTQNGDKIHANKLILATGHSARDIFEL 258

Query: 165 GKLK 168
              K
Sbjct: 259 LDKK 262


>gi|307708895|ref|ZP_07645355.1| HI0933-like family protein [Streptococcus mitis SK564]
 gi|307620231|gb|EFN99347.1| HI0933-like family protein [Streptococcus mitis SK564]
          Length = 390

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 88/425 (20%), Positives = 135/425 (31%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTKNGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        + +  C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKVDDQFVLKSADQIFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +   
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLC 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S ED +V F E
Sbjct: 218 YGKHIITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPHLSEEDLVV-FLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E+ + Q +++I  L+        
Sbjct: 271 ENREKALKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLLQSINALKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGSN 388


>gi|255036366|ref|YP_003086987.1| putative pyridine nucleotide-disulfide oxidoreductase [Dyadobacter
           fermentans DSM 18053]
 gi|254949122|gb|ACT93822.1| putative pyridine nucleotide-disulphide oxidoreductase [Dyadobacter
           fermentans DSM 18053]
          Length = 600

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 124/392 (31%), Gaps = 69/392 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++V+GGG AG  AA  AA++G + AL          +   P +GG        E+   
Sbjct: 184 YDLVVVGGGIAGTCAAISAARMGLTVAL----------IQDRPVLGGNNSS----EVRVH 229

Query: 66  DGLMGRVADAAGIQFRVLNV--KKGPAVRGPRTQADRELYRLAMQ-REILSQENLDVI-Q 121
             LMG   D     +  L    ++           D + Y  A +   + +++N+ +   
Sbjct: 230 --LMG---DVDKNHYPKLGRIVREMDNGDPGNGNPDAKEYGDARKIAIVKAEKNISLFLN 284

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             V     E +II+++V      I  +     +G+F       G +   +G        S
Sbjct: 285 THVFKVEKENDIITAVV---GRDIATNQERRFSGSFFSDCTGDGTVGFLSGAEFRMGRES 341

Query: 182 LFNSFMKFDFDTGR-LKTGTP---ARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
              +      +       GT    A LD  T+           E      F  +   +  
Sbjct: 342 KAETGESLAAEKSDDFTLGTSNLWASLDRDTVS-------SFPETPWAMQFSDEYHIDEP 394

Query: 238 IECGITRT---NLETH---RIIMENIKHSAIYSGD---IKSYGPRYCPSIEDKIVRFG-E 287
                  T   N  T      I +     AIY       K+   +Y       +   G +
Sbjct: 395 KSDWQWETGFGNFNTITQAEQIRD-HNLRAIYGNWSYLKKNKAAKYGKKELAWVAYIGGK 453

Query: 288 RNGHQIF----LEPEGLNTDVVYPNGIST-------ALPEEIQHQFIRTIPGLEKVNIIR 336
           R   +I     L    +     YP+G  T         P+    ++            I+
Sbjct: 454 RESRRIIGDYVLNQMDIQEGKFYPDGSVTATWTIDLHFPDAKNSKYFEGQEFFAGTKHIK 513

Query: 337 PG-YAIEYDYINPKELFPTLETKKISGLFLAG 367
              Y I Y           L +K I  LF+AG
Sbjct: 514 VAPYTIPYRC---------LYSKNIQNLFMAG 536


>gi|325661603|ref|ZP_08150227.1| hypothetical protein HMPREF0490_00961 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472130|gb|EGC75344.1| hypothetical protein HMPREF0490_00961 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 415

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 131/429 (30%), Gaps = 62/429 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +VIV+GGG +G  AA  AAK GAS  ++ H    +G        G     + ++E     
Sbjct: 3   NVIVVGGGASGLMAAISAAKSGASVCILEHN-EKLGKKILATGNGRCNFSNRLQEPSCYR 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                       QF            G  T+ DR  Y      +  S   L+V+Q +V  
Sbjct: 62  SSQRNFPWQVIEQFPAEKTIAFFEELGICTR-DRGGYLYPGSDQAASV--LEVLQMDVER 118

Query: 127 FNTE---KNIISSIVMQDNS--------MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
                     I  IV +              C  ++L TG+    V           +  
Sbjct: 119 LQIPVEYGVQICGIVKKKEQFEIRTATKRYHCQKLILATGSKASPVTGSDGSGYQYAKDL 178

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--------DKTEKQ---FADERLI 224
                 +  + +               R+ GK  ++        D  E Q   +    + 
Sbjct: 179 GHTIAPVLPALVALHAKENFFAALAGVRIQGKVTLFVDGTKCAEDTGELQLTKYGISGIP 238

Query: 225 PFSF--------MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            F             K     ++     T  E   I+   I+            G  Y  
Sbjct: 239 VFQVSRYASEGLYRKKEVIAVLDLAPNVTEKEMDDILRLRIRRHPERKMTEFFTG-MYHQ 297

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR-TIPG---LEKV 332
                I+R  + +  +   E                 +      + +R TI G    ++ 
Sbjct: 298 KFSQTILRLSKIDKKKSCQELSEREI-----------MILCRLLKSLRITIKGTNDFDQA 346

Query: 333 NIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGLVAG 386
            I      +  + ++PK    T+E+  +SGL+ AG++    G         A + G VAG
Sbjct: 347 QIC--AGGVRTEEVDPK----TMESHCVSGLYFAGELLDVDGICGGYNLQWAWSSGFVAG 400

Query: 387 INSARKSNK 395
             +A+ S  
Sbjct: 401 KCAAQSSIG 409


>gi|134298445|ref|YP_001111941.1| FAD dependent oxidoreductase [Desulfotomaculum reducens MI-1]
 gi|134051145|gb|ABO49116.1| FAD dependent oxidoreductase [Desulfotomaculum reducens MI-1]
          Length = 429

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 36/176 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++GGG AG  AA V A+ G                     L  H    I  
Sbjct: 1   MSENGFDAIIVGGGLAGSTAAYVLAQEGLEVLLIEKGNYGGSKNMTGGRLYAHSLEKI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQAD 99
               P        +  +VRE  +    M    DA  + +    + +  +      R + D
Sbjct: 59  ---IPNFAEEAPVERRVVRERIS----MMTEKDAVTMDYHSPRLAETGSDSYVVMRGKFD 111

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           R L+  A +   +    +     +V     E N ++ ++      +R + V+L  G
Sbjct: 112 RWLFDKAEEAGAMVAAGI-----KVDQLIVENNQVTGVIC-GGEEMRANVVILADG 161


>gi|302339469|ref|YP_003804675.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
 gi|301636654|gb|ADK82081.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
          Length = 515

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 62/211 (29%), Gaps = 52/211 (24%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI------------ 50
             SYDVIVIGGG+ G   A   A+ G  T L+  +    GS   N               
Sbjct: 118 KESYDVIVIGGGYHGLSIARQLAEAGVKTILLERREIGSGSSGANFGFVQLQDSNTGISF 177

Query: 51  -----GGLGKGHLVREIDA------LDGLMGRVADAAGIQFRVLNVKKGP---------- 89
                G    G +  E+ A      +  L+    D        L  +K            
Sbjct: 178 ELNRRGFERMGQMENELSADLEYRKVGSLIFAQTDEQMAALEALYREKHALGLDVRCISP 237

Query: 90  -----------------AVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEK 131
                            A    + Q +   Y  AM ++   +  L + +   V       
Sbjct: 238 RDITSLEPYMNVKSIKGASWHLQAQINPFRYLFAMVKKG-KEAGLTIRENTIVREILVSD 296

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
                IV+ +   IR + VV+  G     + 
Sbjct: 297 ASCKGIVLANGECIRSNVVVVAAGAHTGTLC 327


>gi|312143641|ref|YP_003995087.1| HI0933 family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904292|gb|ADQ14733.1| HI0933 family protein [Halanaerobium sp. 'sapolanicus']
          Length = 407

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 134/410 (32%), Gaps = 80/410 (19%)

Query: 8   VIVIGGGHAGCEAAAVAA-------------KLGASTALIT----HKTSTIGSMS-CNPA 49
           V++IGGG AG  AA  AA             +LG    LIT       S   +++     
Sbjct: 4   VLIIGGGPAGMIAAIEAAANDNDVYIIERNKRLGKK-LLITGKGRCNISNYSAINEHIDN 62

Query: 50  IGGLGKGH--LVREIDALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
           I    K    L+ E DA         +G   +           K+  A    R       
Sbjct: 63  IVDNPKFLYSLLAEFDAYRLFSYFSQLGLELEIQRGNRIFPRSKR--ASDVLRV------ 114

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
               +++E+L+++ + +IQ  V     E      + ++   +++   ++L TG       
Sbjct: 115 ----LKKELLNKD-VKIIQDFVQEVIIEDEKAVGVKLKYGDILKGDRIILATGGCSYPET 169

Query: 163 HI----GKLKIPAGRMGDSPSNSLFNSF--MKFDFDTGRLK---TGTPARLD---GKTII 210
                  KL    G     PS  L       K+ ++   LK   TG     +        
Sbjct: 170 GSDGSGFKLAEKCGHNIVEPSPGLTALICEEKWIYEAQGLKLRNTGLEVYNNKGQKIYSD 229

Query: 211 WDKTEKQFA--DERLIPFSFMTDKITNR-------QIECGITRTNLETHRIIMENIKHSA 261
           + + E +    D  +I  + M               ++  +    L+  RI+ +  K++ 
Sbjct: 230 FGELEIRDGYLDGPMIISASMMLDFKKESSYQLKLDLKPALDYETLD-QRILRDFAKYNN 288

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQ 321
            Y     S        +    ++    +  +   +        +        L    +  
Sbjct: 289 KYFA--NSLDDLLPIKLRSVFIKLSSIDYDKTVNQITAEERQEL--------LKLFKELS 338

Query: 322 F-IRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQI 369
             I    G ++  + R G       ++  ++ P TLE+K I  L+ AG+I
Sbjct: 339 LTITAKKGFKRAIVTRGG-------VDTDQIDPNTLESKVIENLYFAGEI 381


>gi|332523712|ref|ZP_08399964.1| flavoprotein family protein [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314976|gb|EGJ27961.1| flavoprotein family protein [Streptococcus porcinus str. Jelinkova
           176]
          Length = 390

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 140/421 (33%), Gaps = 78/421 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++       
Sbjct: 4   FDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNNSTLE 59

Query: 66  DGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQENL 117
           + L      GR   +   QF   ++ +     G + + +   R        + I   E L
Sbjct: 60  ELLAGIPGNGRFLYSVFSQFDNHDIIRFFQDNGVKLKEEDHGRMFPTTDKSKTI--IEAL 117

Query: 118 DVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           D    E+ G       I S+  +D        + +  CS +++TTG              
Sbjct: 118 DKKIKELGGQILTGTEIVSVKKEDDQFLLKSKDQVFTCSKLIVTTGG------KSYPSTG 171

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
             G   D            F+     L+      L      +   E Q      +  S+ 
Sbjct: 172 STGFGHDIA--------RHFNIKVTELEAAESPLL----TDFPHKELQGISLDDVTLSYE 219

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
              IT+  +      +     R+       S +  G+I           ED +  F E N
Sbjct: 220 KHVITHDLLFTHFGLSGPAALRL------SSFVKGGEIAELDFL-PQMSEDLLSSFLEEN 272

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEI-------QHQFIRTIP----------GLEKV 332
             +               N +STA PE++       + + +  +            L K 
Sbjct: 273 REKSVKNALRALVPERVANFLSTAFPEKVKQLTPSQKEELVTKLKRLPIPITGKMSLAKS 332

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVA 385
            + + G       I+ KE+ P TLE+KK+ GL  AG+   IN  TG      A   G VA
Sbjct: 333 FVTKGG-------IDLKEINPKTLESKKVPGLHFAGEVLDINAHTGGFNITSALCSGWVA 385

Query: 386 G 386
           G
Sbjct: 386 G 386


>gi|326405833|gb|ADZ62904.1| NAD/FAD-utilizing dehydrogenase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 425

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----L 58
           +++DVIV+G G +G  AA  AA+ GA  AL          +     + G G+ +      
Sbjct: 6   KTFDVIVVGAGPSGMMAAISAAQNGAKVAL----IDKNKKVGKKLLMTGGGRCNVTNARS 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELY-RLAM 107
           V EI       GR   +A  QF  L++ +     G + +           D+      A+
Sbjct: 62  VDEILTNVPGNGRFLHSAFSQFSNLDIIEFFESNGVKLKEEDHGRMFPITDKSKTIVDAL 121

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +ILS          V     E   +  +   D+      T++L+TG
Sbjct: 122 FNKILSLHVSYFPSQAVDKLLIENGAVIGLET-DSESFLSPTIILSTG 168


>gi|281490746|ref|YP_003352726.1| NAD(FAD)-utilizing dehydrogenase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374515|gb|ADA64036.1| NAD(FAD)-utilizing dehydrogenase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 425

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----L 58
           +++DVIV+G G +G  AA  AA+ GA  AL          +     + G G+ +      
Sbjct: 6   KTFDVIVVGAGPSGMMAAISAAQNGAKVAL----IDKNKKVGKKLLMTGGGRCNVTNARS 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELY-RLAM 107
           V EI       GR   +A  QF  L++ +     G + +           D+      A+
Sbjct: 62  VDEILTNVPGNGRFLHSAFSQFSNLDIIEFFESNGVKLKEEDHGRMFPITDKSKTIVDAL 121

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +ILS          V     E   +  +   D+      T++L+TG
Sbjct: 122 FNKILSLHVSYFPSQAVDKLLIENGAVIGLET-DSESFLSPTIILSTG 168


>gi|15672240|ref|NP_266414.1| hypothetical protein L56208 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723118|gb|AAK04356.1|AE006263_3 hypothetical protein L56208 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 423

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----L 58
           +++DVIV+G G +G  AA  AA+ GA  AL          +     + G G+ +      
Sbjct: 6   KTFDVIVVGAGPSGMMAAISAAQNGAKVAL----IDKNKKVGKKLLMTGGGRCNVTNARS 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELY-RLAM 107
           V EI       GR   +A  QF  L++ +     G + +           D+      A+
Sbjct: 62  VDEILTNVPGNGRFLHSAFSQFSNLDIIEFFESNGVKLKEEDHGRMFPITDKSKTIVDAL 121

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +ILS          V     E   +  +   D+      T++L+TG
Sbjct: 122 FNKILSLHVSYFPSQAVDKLLIENGAVIGLET-DSESFLSPTIILSTG 168


>gi|150025297|ref|YP_001296123.1| FAD-dependent dehydrogenase [Flavobacterium psychrophilum JIP02/86]
 gi|149771838|emb|CAL43312.1| Probable FAD-dependent dehydrogenase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 520

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 28/189 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCN 47
           ++ S +VIV+G G AG  AA    +LG    LI                    + +   N
Sbjct: 80  VSNSQEVIVVGAGPAGLFAALQLIELGLKPILIERGKDVRGRRRDLKAINVDHLVNEDSN 139

Query: 48  PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRL 105
              G  G G         DG +   +   G   R+L   V  G                 
Sbjct: 140 YCFGEGGAGT------YSDGKLYTRSKKRGDIDRILKLLVAFGATPDILVEAHPHIGTNK 193

Query: 106 A------MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  ++ +I+      + +  V     + N +  +V+Q+   I  + ++L TG   R
Sbjct: 194 LPQIIQDIREKIIEMGGKVLFETRVTDILVKNNEVQGVVIQNGDTIVSNKIILATGHSAR 253

Query: 160 GVIHIGKLK 168
            +  +   K
Sbjct: 254 DIFELLDKK 262


>gi|1199802|emb|CAA64972.1| gidA [Borrelia burgdorferi]
          Length = 29

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           +D IVIGGGHAG EAA   ++L   T 
Sbjct: 2  DFDAIVIGGGHAGIEAALALSRLNFKTL 29


>gi|332525037|ref|ZP_08401218.1| electron-transferring-flavoprotein dehydrogenase [Rubrivivax
           benzoatilyticus JA2]
 gi|332108327|gb|EGJ09551.1| electron-transferring-flavoprotein dehydrogenase [Rubrivivax
           benzoatilyticus JA2]
          Length = 435

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 22/170 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG----GLGKG 56
           M +  +D IV+G G +G  AA   AK G        +             G         
Sbjct: 1   MSHEKFDAIVVGAGPSGNAAALTMAKAGLKVL----QIERGEYPGSKNVQGAILYADALE 56

Query: 57  HLVR--------EIDALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
            LV         E   ++  M  + D +  G  +R  +  K P     R    R  +   
Sbjct: 57  KLVPDFRDDAPLERHIIEQRMWVLDDNSFVGSHYRSDDYNKPP---YNRYTIIRAQFDKW 113

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTG 155
              ++     L + +  V     +      +   +    +    VVL  G
Sbjct: 114 FSSKVREAGALVICETTVEELLMDGERCVGVRCDRIGGEVFADVVVLADG 163


>gi|238920839|ref|YP_002934354.1| FixC protein [Edwardsiella ictaluri 93-146]
 gi|238870408|gb|ACR70119.1| FixC protein [Edwardsiella ictaluri 93-146]
          Length = 448

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V A+ GA+  +                 GG    H + 
Sbjct: 19  MSEDAFDAIIVGAGLAGCVAALVLARAGANVLV----IERGNYAGAKNVTGGRLYAHTLE 74

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG----PRTQADRELYR 104
                       E       +  +   + +     N + G A        R + D  L  
Sbjct: 75  RIIPGFAGQAPVERRITHEKISFLTADSAVTLDYHNARDGVAETASYSVLRGKFDTWLME 134

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A          +      V         +  +   D   +  + V+L  G
Sbjct: 135 QAEAAGAQFIPGIR-----VDRLIQRDGRVVGVE-ADGDELEANVVILAEG 179


>gi|170760241|ref|YP_001787705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407230|gb|ACA55641.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 425

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKIKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLDNLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 322 EKSGLFVGHTEAMTTGSLAGHNAVRYCLGMPMLILPRSMA-LGDLIAYANHK 372


>gi|239617564|ref|YP_002940886.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
 gi|239506395|gb|ACR79882.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
          Length = 437

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 123/383 (32%), Gaps = 89/383 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +    DV+++GGG AG  AA    + G  T LI H  STIG +S    +    +  L  E
Sbjct: 1   MKLERDVVIVGGGIAGVHAAIACGRAGLKTTLIEHG-STIGGLSTMGLVNPFMRYWLGSE 59

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
              +DG+ G + D        L  + G  +    ++        A    +L + N++V+ 
Sbjct: 60  -KLIDGIFGELLDR-------LKEENGLLINSFDSEI-----MKACMLSMLKEANVEVVF 106

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                   E   I SI+          +V   T       +         G   D     
Sbjct: 107 NT---IPIEVKTIESIL---------KSVRFFTSLGTSFEMEARYFVDSTG---DGSLGF 151

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
           L  +   F  D+  +            + + K  +   +     FS+++ K T   +   
Sbjct: 152 LAGA-EYFSGDSNGINQAMTVMFTMSGVDFSKVIEDIRNNPSNFFSWVSPKQTIISVAGY 210

Query: 242 ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN 301
                 E  +   + ++    Y   I+  G       E ++                 +N
Sbjct: 211 F----DEIEQAKKDGLEKLQDYFFFIQLPG-------ESRV----------------TVN 243

Query: 302 TDVVYPNGISTALPEEIQHQFI--------------RTIPGLEKVNIIRPG--YAIEYDY 345
           T  VY   +ST  P ++    +              R I G EK  I +      +    
Sbjct: 244 TTHVY--DLSTTNPFDVSLAMVDCTEQAMVLKKFANRYIKGFEKARIEKIADVVGVR--- 298

Query: 346 INPKELFPTLETKKISGLF-LAG 367
                     E+++I GL+  +G
Sbjct: 299 ----------ESRRIKGLYEFSG 311


>gi|293374570|ref|ZP_06620888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325838532|ref|ZP_08166554.1| pyridine nucleotide-disulfide oxidoreductase [Turicibacter sp.
           HGF1]
 gi|292646803|gb|EFF64795.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Turicibacter sanguinis PC909]
 gi|325490827|gb|EGC93129.1| pyridine nucleotide-disulfide oxidoreductase [Turicibacter sp.
           HGF1]
          Length = 470

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 142/477 (29%), Gaps = 105/477 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKL--GASTAL--------------ITHKT------ 38
           M+++ YDV+++G G AG  AA   +K       AL              + HK       
Sbjct: 1   MMSK-YDVVIVGAGPAGIFAAYELSKKNENLKVALVDKGLDIYKRRCPILEHKIKKCPVI 59

Query: 39  -STIGSMS---CNPAIGG-----LGKGHLVREIDALDGLM-----GRVADAAGIQFRVLN 84
              +G M         GG      GK ++  E     G M       V +        +N
Sbjct: 60  KDHVGCMPACSITNGFGGAGAYSDGKFNITHE---FGGWMTDYLSNSVVEDLIDYVDGIN 116

Query: 85  VKKGPAVRGPRT------QADRELYR------LAMQREILSQENLDV------------- 119
           ++ G              + ++  Y        A  R + +++NL++             
Sbjct: 117 LEHGATTDITDPTTDKVREIEKRGYAVGLKLLRAKVRHLGTEQNLEILKSIYEELKDRVD 176

Query: 120 --IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
              + EV    TE   +  +++ +  ++    V L  G    G + +  +    G    +
Sbjct: 177 YHFKTEVKEVLTEDGEVKGVLLANGEVMETKYVFLAPG--RDGSVWLKDVMNSQGIPMKN 234

Query: 178 PSNSLFNSFMKFDFDTGRLKT-------------GTPARLDGKTIIWDKTEKQFADERLI 224
               +       D     +               GT  R            +  +   L 
Sbjct: 235 LQVDIGVRVETSDIVMQEINEHLYEGKFMYRTSVGTVVRTFCSNPSGHVVVENHSGTMLA 294

Query: 225 PFSFMTDKI---TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK--SYGPRYCPSIE 279
                 D      N      ++ T  E      E     +  +  +   S   +    I 
Sbjct: 295 NGHAYKDPKLGSKNTNFALLVSHTFEEPFDQPNEFAHEVSHLANKLSNGSIIVQKYGDIL 354

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG- 338
               R  E+   + F++P         P  +   LP       I     L+ V    PG 
Sbjct: 355 RG-RRTTEKRLKEGFVDPT---LKEAVPGDLGLVLPYNTMKSLIEMTEALDHVT---PGI 407

Query: 339 -------YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
                  Y +E  + + + E+    ETK + GLF+ G   G T G  +A A G+   
Sbjct: 408 ASEHTLFYGVEAKFYSARPEINDKFETK-VKGLFVGGDGAGVTRGLAQAGASGVWVA 463


>gi|237717259|ref|ZP_04547740.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. D1]
 gi|237719014|ref|ZP_04549495.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. 2_2_4]
 gi|262406026|ref|ZP_06082576.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 2_1_22]
 gi|293368727|ref|ZP_06615332.1| alkyl hydroperoxide reductase, F subunit [Bacteroides ovatus SD CMC
           3f]
 gi|294645892|ref|ZP_06723568.1| alkyl hydroperoxide reductase, F subunit [Bacteroides ovatus SD CC
           2a]
 gi|294806885|ref|ZP_06765710.1| alkyl hydroperoxide reductase, F subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229443242|gb|EEO49033.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. D1]
 gi|229451792|gb|EEO57583.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. 2_2_4]
 gi|262356901|gb|EEZ05991.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 2_1_22]
 gi|292636192|gb|EFF54679.1| alkyl hydroperoxide reductase, F subunit [Bacteroides ovatus SD CMC
           3f]
 gi|292638772|gb|EFF57114.1| alkyl hydroperoxide reductase, F subunit [Bacteroides ovatus SD CC
           2a]
 gi|294445914|gb|EFG14556.1| alkyl hydroperoxide reductase, F subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 516

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 84/275 (30%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 210 KEYDVIVVGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL-------------LRYPVDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + +++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQERL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K +A+   D K+   R
Sbjct: 400 PNVEVFASSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|160884091|ref|ZP_02065094.1| hypothetical protein BACOVA_02067 [Bacteroides ovatus ATCC 8483]
 gi|156110433|gb|EDO12178.1| hypothetical protein BACOVA_02067 [Bacteroides ovatus ATCC 8483]
          Length = 516

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 84/275 (30%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV+GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 210 KEYDVIVVGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL-------------LRYPVDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + +++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQERL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K +A+   D K+   R
Sbjct: 400 PNVEVFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|294637535|ref|ZP_06715820.1| FixC protein [Edwardsiella tarda ATCC 23685]
 gi|291089316|gb|EFE21877.1| FixC protein [Edwardsiella tarda ATCC 23685]
          Length = 298

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++D I++G G AGC AA V A+ GA+  +                 GG    H + 
Sbjct: 1   MSEDAFDAIIVGAGLAGCVAALVLARAGANVLV----IERGNYAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG----PRTQADRELYR 104
                       E       +  +   + +     N ++G A        R + D  L  
Sbjct: 57  RIIPGFAEQAPVERRITHEKISFLTADSAVTLDYHNGREGEANAASYSVLRGKFDTWLME 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A          +      V         +  +   D   +  + V+L  G
Sbjct: 117 QAEAAGAQFIPGIR-----VDRLIQRDGRVVGVE-ADGDELEANVVILAEG 161


>gi|33322483|gb|AAQ06968.1|AF496296_1 glucose inhibited division protein [Lactobacillus delbrueckii
           subsp. lactis]
          Length = 164

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 24/157 (15%)

Query: 52  GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G L  E+  +D L+ + ADA                 G     DREL+   +  ++
Sbjct: 11  SNAVGLLKEEMRQMDSLIMQAADAC------------QVPAGGALAVDRELFSKYVTDKL 58

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            S   + +   E+    +E   +             +T  LT+ +    +      +   
Sbjct: 59  TSLPEVTIHDEEITDLPSEGITVI------------ATGPLTSDSLAEKIQDFEGTESLH 106

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
                +P  +  +  M   +   R   G  A L+   
Sbjct: 107 FFDAAAPIIAADSIDMDIVYKKSRYDRGEAAYLNCPM 143


>gi|170696217|ref|ZP_02887350.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia graminis C4D1M]
 gi|170138861|gb|EDT07056.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia graminis C4D1M]
          Length = 438

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +DVIV+G G AG  AA  +A+ GA+ AL+      +G        G   +  L   
Sbjct: 1   MTQHFDVIVVGAGPAGLHAALASAREGATVALLDDNP-RVGGQIWRQGPGSAPQSPL--- 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
                     +AD +    R  NV   P+ R     A R L
Sbjct: 57  -------CALLADLS----RQGNVTHFPSTRVIAPLAPRGL 86


>gi|322374654|ref|ZP_08049168.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           C300]
 gi|321280154|gb|EFX57193.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           C300]
          Length = 397

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 140/423 (33%), Gaps = 78/423 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 8   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 63

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I+  
Sbjct: 64  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTIIKT 122

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGK 166
             L+    E+ G    +  I S+   D        +    C  +++TTG           
Sbjct: 123 --LEKKITELGGQVATQTEIVSVKKIDDQFVLKSADQTFTCEKLIVTTGG------KSYP 174

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                G   +            F      L+      L      +     Q      +  
Sbjct: 175 STGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTL 222

Query: 227 SFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFG 286
           S+    IT+  +      +     R        S +  G++ S       S E  ++ F 
Sbjct: 223 SYGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLITFL 275

Query: 287 ERNGHQIFLE------PEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN----- 333
           E N  +          PE L   +V  YP+ +   L E+ + Q +++I  L+        
Sbjct: 276 EENREKSLKNTLRTLLPERLAEFLVQGYPDKVK-QLTEKEREQLLQSIKALKIPVTGKMS 334

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 335 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 389

Query: 384 VAG 386
           VAG
Sbjct: 390 VAG 392


>gi|167040215|ref|YP_001663200.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X514]
 gi|300914299|ref|ZP_07131615.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307724465|ref|YP_003904216.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X513]
 gi|166854455|gb|ABY92864.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X514]
 gi|300889234|gb|EFK84380.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X561]
 gi|307581526|gb|ADN54925.1| glucose-inhibited division protein A [Thermoanaerobacter sp. X513]
          Length = 427

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 138/413 (33%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISS 136
               V    K P      +  D  +    ++  +L +  +  +         E    I  
Sbjct: 75  RHINV----KFP-GHAHASLYDVTMVEPMIRETLLEKGVIIKLMARATDVVMENSKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLDNLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++     S    E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANESIKTKE 379


>gi|20091498|ref|NP_617573.1| hypothetical protein MA2677 [Methanosarcina acetivorans C2A]
 gi|19916648|gb|AAM06053.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 485

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 149/476 (31%), Gaps = 96/476 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS----------TIGSMSCNP--- 48
           +  +YDVI+IG G AG  AA   A       +I                   M C P   
Sbjct: 21  MGSAYDVIIIGAGPAGMFAAYELAAGELKILVIDMGKDIDERLCPMKNQSYCMHCAPCEI 80

Query: 49  --AIGGLG---KGHLVREIDALDGLMGRVADAAGIQFRVLNVK----KGPAVRGP----- 94
              +GG G    G L    D    L     D       V  V     K  A +       
Sbjct: 81  MCGVGGCGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVFLKFGAPQVALLTEG 140

Query: 95  --------RTQADRELYRLAMQREI-----------LSQENLD-----VIQGEVAGFNTE 130
                   R  +    +    QR I             Q+ +D      I+ EV     E
Sbjct: 141 PEIEELKRRAASVGARFIEIKQRHIGSDNAPEVIGRFKQDLVDNGVDFQIETEVHDLLIE 200

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG----------------RM 174
           +     +++    +IR   VVL+ G   RG   + ++    G                  
Sbjct: 201 EETCKGVILSGGKVIRARYVVLSPG--RRGCNWVSEMIEKHGLGARYGGIDIGVRVEVPA 258

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK----TEKQFADERLIPFSFMT 230
                 +  N   KF   + +           +T   ++     ++++ D        MT
Sbjct: 259 IIMDPVTKINRDPKFHIQSRQYDDFV------RTFCTNRRGFVVKEEYEDFVATNGHSMT 312

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
           +K +       +    +E    +    K++   +    + G           +R G R+ 
Sbjct: 313 NKESENTNFAFLVH--IELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRGRRST 370

Query: 291 HQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPK 349
            +   +   +NT   V P  IS ALP  I       I GLE +N I PG A +   +   
Sbjct: 371 KERLAKNLVINTLKDVTPGDISMALPHRIVMDI---IEGLETLNEIIPGVASDSTLLYAP 427

Query: 350 ELF---------PTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKSNK 395
           E+            +ET  I  LF AG   G +     AAA G++A     RK  +
Sbjct: 428 EVKFYAMHLKVDRQMET-SIKNLFAAGDGAGLSRDIVNAAATGIMAAEGILRKVEE 482


>gi|168202292|ref|ZP_02629862.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens C str. JGS1495]
 gi|169298685|gb|EDS80764.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens C str. JGS1495]
          Length = 403

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 136/415 (32%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M N+   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSNKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G        +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYSILEKY--GHTITPIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELSLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNPNKTVLNN--LKGTLPQ---NFLKQIFEVLGLTEIKASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|119503952|ref|ZP_01626034.1| probable methylamine [marine gamma proteobacterium HTCC2080]
 gi|119460460|gb|EAW41553.1| probable methylamine [marine gamma proteobacterium HTCC2080]
          Length = 713

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 74/237 (31%), Gaps = 29/237 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +S  V+VIGGG AG EAA VAA+ G    L        G +     + GL +   VR+ 
Sbjct: 405 EKSESVLVIGGGPAGLEAALVAARQGYDVTLAEQNNDWGGRVLQESQLPGLAEWRRVRDY 464

Query: 63  DALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL---- 117
                  +G VA        V  +    A              L    EI S+  L    
Sbjct: 465 RVWALSQLGNVAMYTDSPMGVDEIGSLGARHIAVATGAHWTTHLYSPLEIPSEPLLGPQV 524

Query: 118 ----DVIQGEVAG-----FNTEKNIISSIVMQDNSMIRCSTVVLT-TGTFLRGVIHIGKL 167
               DV  G VAG     F+ +   I  ++ +         V  T  G          +L
Sbjct: 525 FTPDDVFAGRVAGDRILVFDYDNYYIGGVIAEHLGRQGAQVVYATPAGHASAWTFMTNEL 584

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
                 +G+     L  + +                 DG+         Q A ER I
Sbjct: 585 PYVYKALGEQGVEILTTTNLDHF--------------DGRQARLSNLFNQQAFERPI 627


>gi|169834044|ref|YP_001694204.1| hypothetical protein SPH_0843 [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996546|gb|ACA37158.1| conserved hypothetical protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 390

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 137/426 (32%), Gaps = 80/426 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAGIN 388
            VAG N
Sbjct: 383 WVAGSN 388


>gi|126651295|ref|ZP_01723502.1| YtfP [Bacillus sp. B14905]
 gi|126591824|gb|EAZ85907.1| YtfP [Bacillus sp. B14905]
          Length = 416

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VR 60
           YDVIVIGGG +G  AA  A +      L          +    AI G G+ ++     V 
Sbjct: 2   YDVIVIGGGPSGLMAAIAAGERKKKVLL----LEKGAKLGKKLAISGGGRCNVTNRLPVE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY--------RLAMQREIL 112
           EI       GR   +    +   ++       G   + +            +  +   I 
Sbjct: 58  EIVKHIPGNGRFLYSPFTVYNNEDIIAFFEGLGVALKEEDHGRMFPVSNRAQDVVDALIR 117

Query: 113 SQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + L V   +   V     ++  I  + + D S IR   V++  G
Sbjct: 118 QLQRLHVEVRLHTAVNKLVMDEEKILGVRLTDGSEIRSQAVIVAVG 163


>gi|110637497|ref|YP_677704.1| electron transfer flavoprotein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280178|gb|ABG58364.1| probable electron transfer flavoprotein [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 384

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 26/169 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLV 59
           N S+DVI++G G AG  AA    K   + AL+  +      I    C  A+  + +  L 
Sbjct: 6   NTSFDVIILGAGPAGSTAALALQKSNLTVALLEKELFPRDKI----CGDALSCVAERVLK 61

Query: 60  REIDALDGLMGRVADAAGIQ----------FRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
           +   +L+  +   ++   +             VLN  K       R    + L       
Sbjct: 62  QIDPSLEQELLLYSEKTVVNKARVYSPEFRSIVLNFSK-------RGHCIKRLDFDNWLF 114

Query: 110 EILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           E  + +N++V Q   V     + +    +V+QD +++  + V+   G  
Sbjct: 115 EKANAKNIEVFQQAKVTDVRIDNSGAE-VVLQDGTILHAAIVICCDGAH 162


>gi|327405194|ref|YP_004346032.1| Squalene monooxygenase [Fluviicola taffensis DSM 16823]
 gi|327320702|gb|AEA45194.1| Squalene monooxygenase [Fluviicola taffensis DSM 16823]
          Length = 438

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)

Query: 1   MINRSYDVIVIGGGHAG-CEAAAVAAKLGASTALITHKTS------TIGSM---SCNPAI 50
           M    +D+IVIG G AG   AA+  A    ST ++  +         IG +       A+
Sbjct: 1   MSTHEFDIIVIGAGVAGGVFAASQPA----STRILVVERDLSEQERIIGELMQPGGIQAL 56

Query: 51  GGLGKGHLVREIDALDGLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRELYRLAMQ 108
             LG  HL+  IDA + + G        +F +    V+KG    G R       +   ++
Sbjct: 57  NELGLSHLLEGIDAQE-VNGYNLIKGNERFTINYDEVQKGIKGIGLRNG----KFLTNIR 111

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSI--VMQDNSMI--RCSTVVLTTG--TFLRGVI 162
           +E+  +EN+ ++QG V+      N I  +  V +D + I       ++  G  + LR  +
Sbjct: 112 KELEQRENITLVQGNVSQILENNNTIIGVSYVQEDGTTISQFSKLTIVCDGPMSVLRDKL 171

Query: 163 HIGKLK---IPAG---RMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
                K      G   +  +    S  +  +  DF        T A 
Sbjct: 172 SKVNKKVTSYFMGLVLKDLELEFPSYGHMIVTGDFPILVYPIHTNAY 218


>gi|153939887|ref|YP_001391692.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum F str. Langeland]
 gi|152935783|gb|ABS41281.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum F str. Langeland]
 gi|295319720|gb|ADG00098.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Clostridium botulinum F str. 230613]
          Length = 381

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGY 375
           +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G+ +G   G+
Sbjct: 230 LRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLENLFVGGEKSGLFVGH 286

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
            EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 287 TEAITTGSLAGHNAVRYCLGMPMLILPRSMA-LGDLIAYANHK 328


>gi|295399577|ref|ZP_06809559.1| HI0933 family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109868|ref|YP_003988184.1| HI0933 family protein [Geobacillus sp. Y4.1MC1]
 gi|294979043|gb|EFG54639.1| HI0933 family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214969|gb|ADP73573.1| HI0933 family protein [Geobacillus sp. Y4.1MC1]
          Length = 424

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 40/176 (22%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----- 60
           Y+V+VIGGG +G  AA  AA+ GA   L          +    AI G G+ ++       
Sbjct: 3   YEVVVIGGGPSGIMAAIGAAEQGAKVLL----IEKGNKLGRKLAISGGGRCNVTNRLPVD 58

Query: 61  ------------------EIDALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRT--QAD 99
                             E +  D  + R  +  G+Q +  +  +  P     ++  QA 
Sbjct: 59  EIIKHIPGNGRFLYSAFSEFNNED--IIRFFERLGVQLKEEDHGRMFPVSDNAQSVVQAL 116

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               R       L+          VA    E+     + ++    I    VV+  G
Sbjct: 117 VNELRRLHVEIRLNTP--------VADVEYEQGKAVGVTLKSGEFIGAKAVVVAVG 164


>gi|294626782|ref|ZP_06705375.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598898|gb|EFF43042.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 449

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    V 
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLG----VL 69

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           E     G++ R AD                L+ K   A + PR Q D  L++ A    + 
Sbjct: 70  EDVRAIGVLKRGADFPNDSGGYNTFRFSHALDAKSDFAFQVPRAQFDHVLFQRARAMGVD 129

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTG--TFLRGVIHIGKLK 168
           ++E + V Q    G    ++ +      D  +   R   ++  +G  TFL   + + +  
Sbjct: 130 AREQVCVEQVAFDG----EHPVLQARTADGGVQQFRPRYLLDASGRDTFLGNRLKLKRAN 185


>gi|262172844|ref|ZP_06040522.1| NAD(FAD)-utilizing dehydrogenase [Vibrio mimicus MB-451]
 gi|261893920|gb|EEY39906.1| NAD(FAD)-utilizing dehydrogenase [Vibrio mimicus MB-451]
          Length = 398

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 123/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++  DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +          +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISVIAQTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTTAGLVPFTLHVQDKEDFAP--LSGIAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPR 273
           F    ++     QI    T     T  ++ +       N +  A  +  +K       P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+           + T+L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LEALQTSL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFVGEVMDVTGW 378


>gi|119713765|gb|ABL97813.1| possible NADH-dependant oxidoreductase [uncultured marine bacterium
           HF10_49E08]
          Length = 617

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 92/486 (18%), Positives = 166/486 (34%), Gaps = 83/486 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLV 59
           + + YD++VIGGG++G  AA   A++G   ALI  +    G +  N +  +    KG++ 
Sbjct: 180 LEKKYDLVVIGGGYSGLGAAISGARMGCKVALIQDR----GVLGGNGSSEVRVWAKGNIR 235

Query: 60  RE-IDALDGLMGRVAD---AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           R     +  ++  + D    +   +      K  A+       D  L+  A +  +  Q 
Sbjct: 236 RGKYPRIGEIIEEICDHAKKSPGTYEEFEDAKKEAIVRAEKNIDLHLFHHAFK--VEKQG 293

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           N       V  FN +       + + +  +        T  FL G  H    K   GRM 
Sbjct: 294 N---KISAVHAFNVQN----GQITRFSGPLFVDATGHGTIGFLAGADHTMTEK---GRM- 342

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA--------DERLIPFS 227
                 + N +   + D+      TP  LD K + +                D+  +  +
Sbjct: 343 -----GMSNMWAWANDDSEVSYPETPWALDLKMMDFPYPRDFHGQWFWESGYDKDPLGDA 397

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSI--------E 279
                   R +       N   +R   E+   +A  +      GPR    +        E
Sbjct: 398 EGIRDWNLRAVF---GAFNAMKNRDG-EDKHKNAKLTWVAYIGGPRESRRLLGDVILTEE 453

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNG-ISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
           D + + G  +G      P   + D+ YP    +   P+     +     G+++      G
Sbjct: 454 DIVSKRGFPDGCV----PSTWSIDLHYPKKQYAQKFPDNPFISYAVHGKGVDRS----YG 505

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAA-------QGLV--AGINS 389
           Y + Y             ++ I  LF+AG+    T   EA          G++      +
Sbjct: 506 YPVPYRCFY---------SRNIENLFMAGRCISVT--HEALGTVRVMKTCGMMGEVVGRA 554

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPI 449
           A    + DC+      S++  +I+ +       P + F   + Y   + PD+A     P 
Sbjct: 555 ASICIQKDCLPRDVYKSHLDDLIELINL-----PGKAF-RPSVYDKIIIPDDAMQLAGPY 608

Query: 450 GMKLGC 455
           G   G 
Sbjct: 609 GAPNGL 614


>gi|320547522|ref|ZP_08041808.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus equinus
           ATCC 9812]
 gi|320447867|gb|EFW88624.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus equinus
           ATCC 9812]
          Length = 390

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 87/419 (20%), Positives = 133/419 (31%), Gaps = 70/419 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KQYDTIIIGGGPAGMMAAISSSYYGNKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            +D LM      GR   +   QF   ++       G   + +   R   +    R I   
Sbjct: 58  -IDDLMEGIPGNGRFLYSVFSQFDNHDIINFFEENGVALKVEDHGRVFPKTDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTGTFLRGVIHIGK 166
           + L     E+ G       + S+   DN               +++TTG           
Sbjct: 115 DALAHKIQELGGTVLTNTEVVSVKKIDNLFHIKSATEEFTSEKLIVTTGGKAYPSTGSTG 174

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF-------- 218
                 R        L  +           K      LD  T+ + K             
Sbjct: 175 FGYEIARHFKLKLTEL-EAAESPLLTDFPHKELQGISLDDVTLSYGKHHITHDLLFTHFG 233

Query: 219 --ADERLIPFSFM--TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
                 L   SF+   + IT   I      TN  T   I             +K   P  
Sbjct: 234 LSGPAALRMSSFIKGGETITLDFIP--KISTNDVT---IFLKEHREKSLKNALKGLVPER 288

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
             S   +   F E+       E + L  ++        A+P ++  +       L K  +
Sbjct: 289 LASFLAQP--FPEKVKQLTPQEEKELVDNLK-------AMPIKVTGKM-----SLAKSFV 334

Query: 335 IRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
            + G       ++ KE+ P TLE+K++ GL  AG+   IN  TG      A   G VAG
Sbjct: 335 TKGG-------VDLKEINPKTLESKQVPGLHFAGEVLDINAHTGGFNITVALCTGWVAG 386


>gi|294665764|ref|ZP_06731036.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604459|gb|EFF47838.1| hydroxylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 449

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    V 
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLG----VL 69

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           E     G++ R AD                L+ K   A + PR Q D  L++ A    + 
Sbjct: 70  EDVRAIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAMGVD 129

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTG--TFLRGVIHIGKLK 168
           ++E + V Q    G    ++ +      D  +   R   ++  +G  TFL   + + +  
Sbjct: 130 AREQVCVEQVAFDG----EHPVLQARTTDGGVQQFRPRYLLDASGRDTFLGNRLKLKRAN 185


>gi|148997184|ref|ZP_01824838.1| hypothetical protein CGSSp11BS70_10490 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575400|ref|ZP_02721336.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|307067345|ref|YP_003876311.1| putative flavoprotein [Streptococcus pneumoniae AP200]
 gi|147756884|gb|EDK63924.1| hypothetical protein CGSSp11BS70_10490 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578583|gb|EDT99111.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|306408882|gb|ADM84309.1| Predicted flavoprotein [Streptococcus pneumoniae AP200]
 gi|332202606|gb|EGJ16675.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA41317]
          Length = 391

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 137/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   DN            C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDNQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
           +N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 KNREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|229916460|ref|YP_002885106.1| HI0933 family protein [Exiguobacterium sp. AT1b]
 gi|229467889|gb|ACQ69661.1| HI0933 family protein [Exiguobacterium sp. AT1b]
          Length = 421

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 23/167 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGG +G  A   AAK GAST L          +    AI G G+ ++      +D
Sbjct: 3   DVIVIGGGPSGLMATYAAAKSGASTLL----IDKGSKLGRKLAISGGGRCNVTNR-KPID 57

Query: 67  GLM------GRVADAAGIQF---RVLNVKKGPAVRGPRTQADRELY-----RLAMQREIL 112
            L+      GR   +A  QF    ++++  G  +        R        +  +   + 
Sbjct: 58  ELIQFIPGNGRFLYSALAQFDNQSIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLR 117

Query: 113 SQENLDV---IQGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTG 155
           + E+L V    + EV   +  E+N   ++ + D  MI     V+  G
Sbjct: 118 AIEDLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACVVAVG 164


>gi|254429990|ref|ZP_05043697.1| alkyl hydroperoxide reductase, F subunit [Alcanivorax sp. DG881]
 gi|196196159|gb|EDX91118.1| alkyl hydroperoxide reductase, F subunit [Alcanivorax sp. DG881]
          Length = 540

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 121/370 (32%), Gaps = 68/370 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AG  +A  +A+ G    LI      IG             G +   +D  +
Sbjct: 217 DVTVIGGGPAGVASAIYSARKGLKVTLIA---DRIG-------------GQVKDTMDIEN 260

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            +  +                GP       QA    Y + ++      E+L V +     
Sbjct: 261 LISVK-------------KTTGP-ELSGALQAHMNDYEVTVK------EHLKVAR----- 295

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSNS 181
              EK  I ++V+     I   TV++ TG   R     G        +      D P   
Sbjct: 296 --VEKGDIKTVVLSSGEEIDTKTVIVATGAKWRELGVPGEKENIGNGVAYCPHCDGPFFK 353

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI--PFSFMTDKITNRQIE 239
             +  +    ++G       A +     +++   +  AD+ L+    S     I      
Sbjct: 354 GKDVAVIGGGNSGIEAALDLAGIVKSVNVFEFMPELKADKVLVDKAESKANVTIHRNVAT 413

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSY----GPRYCPSIEDKIV---RFGERNGHQ 292
             IT +N +   I   + +   +++  +       G        + +V   RFGE     
Sbjct: 414 KQITASNGKVDAIEYVDRETEQVHTLPLHGVFVQIGLVPNSDFLEGVVERSRFGEIE--- 470

Query: 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
              E    + + +Y  G  T +P     Q + ++    K ++     A EY       L 
Sbjct: 471 -INEKCQTSEEGIYAAGDVTTVPY---KQIVISMGEGSKASLA----AFEYLMTQGDRLD 522

Query: 353 PTLETKKISG 362
              E++  +G
Sbjct: 523 ALYESESNTG 532


>gi|332799311|ref|YP_004460810.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Tepidanaerobacter sp. Re1]
 gi|332697046|gb|AEE91503.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Tepidanaerobacter sp. Re1]
          Length = 427

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-D 66
           V++IGGG +GC AA  A K GA   L+      +G+      +   G+     E+ A+  
Sbjct: 4   VVIIGGGWSGCGAAISAKKAGADVVLLERTDMLLGTGLVGGIMRNNGRYTATEEMIAMGG 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G + +V D       +       A        +  + ++ +   I         +  +  
Sbjct: 64  GELFQVTDRVARHTNIDFPGHKHASLYDVALVEPAVKKVLLDAGIEVH-----TESRITD 118

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
              E+N I +++  D         V  TGT
Sbjct: 119 VVAEENKILAVITSDGQKYEGDVFVECTGT 148



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQING-TTGY 375
           +R IPG E      P YA      + Y  I+P+     L+T+ +  LF  G+  G   G+
Sbjct: 276 LRQIPGFENARYEDP-YAGNLGNSMRYLAISPR--DNYLKTEGVENLFCGGEKAGPLVGH 332

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            EA   G +AG N+ R +   + +    T+  IG  I  +  +   E
Sbjct: 333 TEAICTGTLAGANAVRWAVGKELVQIP-TELAIGDAIAYVKEQMKTE 378


>gi|297544607|ref|YP_003676909.1| glucose-inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842382|gb|ADH60898.1| glucose-inhibited division protein A [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 427

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 137/413 (33%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISS 136
               V             +  D  +    +++ +L +     +         E N  I  
Sbjct: 75  RHVNV-----NFPGHAHASLYDVTMVEPMIRKMLLEKGVTIKLMARAVDVVMENNKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +T           DE    FS            C + + +L  ++ I E
Sbjct: 181 YRAGVEDLLGMRT-----------DEVYGAFS----------GSCKLNKESL--NKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLDNLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++          E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANECIKAKE 379


>gi|300984184|ref|ZP_07176912.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
 gi|300306714|gb|EFJ61234.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 200-1]
          Length = 428

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S     A GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNAPGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|217979506|ref|YP_002363653.1| monooxygenase FAD-binding [Methylocella silvestris BL2]
 gi|217504882|gb|ACK52291.1| monooxygenase FAD-binding [Methylocella silvestris BL2]
          Length = 392

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD IVIG G AGC AA   A +G   A++                G       +  +D 
Sbjct: 2   SYDAIVIGAGPAGCSAALALAGMGRRVAIVEQSR-----FPRKKVCGEYMSAVNLDLLDR 56

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L       A A     RV     GPAV     +A  + +  A+ R++L 
Sbjct: 57  LGAGASVRARAGPSVRRVALFASGPAVEAGMPRAPGDAFGCALGRDVLD 105


>gi|325924867|ref|ZP_08186301.1| flavin-dependent dehydrogenase [Xanthomonas perforans 91-118]
 gi|325544712|gb|EGD16061.1| flavin-dependent dehydrogenase [Xanthomonas perforans 91-118]
          Length = 461

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 18/129 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLQDVR 85

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
            I    G++ R AD                L+ K   A + PR Q D  L++ A    + 
Sbjct: 86  AI----GVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVD 141

Query: 113 SQENLDVIQ 121
           ++E + V Q
Sbjct: 142 AREQVCVEQ 150


>gi|158425073|ref|YP_001526365.1| protein fixC [Azorhizobium caulinodans ORS 571]
 gi|172046818|sp|P26484|FIXC_AZOC5 RecName: Full=Protein fixC
 gi|158331962|dbj|BAF89447.1| protein fixC [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 49/169 (28%), Gaps = 19/169 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAI 50
           MI+  +D IV+G G AG  A    A+ G     +                   M      
Sbjct: 1   MIDEKFDAIVVGAGMAGNAATLTLARRGLKVLQLERGEYSGSKNVQGAILYADMLEKLVP 60

Query: 51  GGLGKGHLVREIDALDGLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRELYRLAMQ 108
                  L R +      M       G+ +R    N +K       R Q D+  +   ++
Sbjct: 61  DFREDAPLERHLVEQRFWMLDDRSHVGLHYRSEDFNEEKPNRYTIIRAQFDK-WFSSKVK 119

Query: 109 REILSQENLDVIQGEVAGFNTEKN-IISSIVM-QDNSMIRCSTVVLTTG 155
               +     + +  V     +    +  +   +    I    VVL  G
Sbjct: 120 EAGATV----LCETTVTELVQDAYGKVIGVKTDRSGGQIHADVVVLAEG 164


>gi|78049746|ref|YP_365921.1| putative oxidoreductase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78038176|emb|CAJ25921.1| putative oxidoreductase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 460

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 18/129 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    VR
Sbjct: 26  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLGVLQDVR 85

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
            I    G++ R AD                L+ K   A + PR Q D  L++ A    + 
Sbjct: 86  AI----GVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVD 141

Query: 113 SQENLDVIQ 121
           ++E + V Q
Sbjct: 142 AREQVCVEQ 150


>gi|319647412|ref|ZP_08001633.1| YtfP protein [Bacillus sp. BT1B_CT2]
 gi|317390458|gb|EFV71264.1| YtfP protein [Bacillus sp. BT1B_CT2]
          Length = 424

 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----- 58
           + +DVIVIGGG +G  AA  A + GA   L          +    AI G G+ ++     
Sbjct: 2   KYFDVIVIGGGPSGLMAAIAAGEQGADVLL----IDKGNKLGRKLAISGGGRCNVTNRLP 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQ 108
           V EI       GR   +A  +F   ++ K     G + +          +D+    +   
Sbjct: 58  VDEIIRHIPGNGRFLYSAFSEFNNEDIIKFFERLGVKLKEEDHGRMFPVSDKAQSVVDAL 117

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              L Q ++ V   E V      +     IV      I   +VV+  G
Sbjct: 118 LTRLEQLHVSVRTNEKVKTVLYNEEKAFGIVTGSGEEIAAGSVVIAVG 165


>gi|147919734|ref|YP_686520.1| putative geranylgeranyl reductase [uncultured methanogenic archaeon
           RC-I]
 gi|121685372|sp|Q0W349|GGR_UNCMA RecName: Full=Digeranylgeranylglycerophospholipid reductase;
           Short=DGGGPL reductase; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate
           reductase; AltName: Full=Geranylgeranyl reductase;
           Short=GGR
 gi|110621916|emb|CAJ37194.1| putative geranylgeranyl reductase [uncultured methanogenic archaeon
           RC-I]
          Length = 392

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G G  G  AA  AA+ G    LI  +      + C   +G  G    V  
Sbjct: 1   MKSEYDVIVVGAGPGGSLAAKTAAEQGLDVLLIEKRQEIGDPVRCAEGVGKAGLQEFVEP 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVR-----GPRTQADRELYRLAMQREILSQEN 116
                    + A        ++ + +  A         R   DREL ++A +     Q  
Sbjct: 61  DPKWISADIKCARIFSPDGTMVELSEKMAGNEVGFVLERKIFDRELAKMAAKAGAEVQ-- 118

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTGTFLRGVIHIG 165
              ++ +  G   E   +  I  +           V+     +   +   
Sbjct: 119 ---VKTQATGLIIENGQVCGITGKRHGDEFTARAKVVVAADGVESKVGRW 165


>gi|16263211|ref|NP_436004.1| Possible oxidase [Sinorhizobium meliloti 1021]
 gi|14523881|gb|AAK65416.1| Possible oxidase [Sinorhizobium meliloti 1021]
          Length = 452

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R  DVIV+GGG AG  AA  AAK G S  L   + +  G++   PA G      L  
Sbjct: 1   MTMREADVIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEGATPVAVLPS 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                  L   ++ A+G+  R      G    G     DR   ++ ++R
Sbjct: 61  LRGRWQALSAELS-ASGVDVRTRRAFVGVDSTGAVLIEDRAAGKVEVRR 108


>gi|327390099|gb|EGE88442.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA04375]
          Length = 391

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 135/424 (31%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFHGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREI 111
             D L      GR   +   QF   ++       G + + +              +   +
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTIIEAL 117

Query: 112 LSQENLDVIQGEV----AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             +  +  + G+V       + +K     ++   +    C  +++TTG            
Sbjct: 118 EKK--ITELSGQVATQTEIVSVKKVDDQFVLKSTDQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|297529006|ref|YP_003670281.1| HI0933 family protein [Geobacillus sp. C56-T3]
 gi|297252258|gb|ADI25704.1| HI0933 family protein [Geobacillus sp. C56-T3]
          Length = 436

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 34/173 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--D 63
           YDVI+IGGG +G  AA  A + GA   L          +    AI G G+ ++   +  D
Sbjct: 3   YDVIIIGGGPSGLMAAIGAGEEGAKVLL----LEKGTKLGRKLAISGGGRCNVTNRLPVD 58

Query: 64  ALDGLMGRVADAAGIQFRVLNVKK--------------------GPAVRGPRTQADRELY 103
            +   +          F V N +                      P     ++  D    
Sbjct: 59  EIVRHIPGNGRFLYSAFSVFNNEDIIRFFERLGVPLKEEDHGRMFPKSDSAQSVVD---- 114

Query: 104 RLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             A+ RE+ S+  +DV  +  VA    E+     + ++    I    VV+  G
Sbjct: 115 --ALVREL-SRLGVDVRLESPVAEVLYEQGKTVGVTLKSGETIHARAVVVAVG 164


>gi|332978165|gb|EGK14899.1| pyridine nucleotide-disulfide oxidoreductase [Desmospora sp. 8437]
          Length = 471

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REI 62
           ++DVIVIGGG AG  A+  AA+ G    L          +    AI G G+ ++   +EI
Sbjct: 49  TWDVIVIGGGPAGLMASVAAAEQGVRVLL----LDKGDKLGRKLAISGGGRCNVTNNKEI 104

Query: 63  DAL------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----RLAMQREI 111
             +      +G       A      ++   +G  V+       R        +  ++  +
Sbjct: 105 GEIIRHIPGNGRFLHSPFATFNNRDIIRFFEGLGVKLKEEDHGRMFPVSDSAQSVVEALL 164

Query: 112 LSQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                L V   +   V+      + ++ + +Q    +R S +V+  G
Sbjct: 165 RRIRELGVKIRVHTPVSELLFAPDRVTGLRLQSGETLRASNLVVAVG 211


>gi|170756769|ref|YP_001781937.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum B1 str. Okra]
 gi|169121981|gb|ACA45817.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum B1 str. Okra]
          Length = 425

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLENLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 322 EKSGLFVGHTEAMTTGSLAGHNAVRYCLGMPMLILPRSMA-LGDLIAYANHK 372


>gi|153932273|ref|YP_001384569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937359|ref|YP_001388085.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A str. Hall]
 gi|152928317|gb|ABS33817.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933273|gb|ABS38772.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. Hall]
          Length = 425

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLENLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 322 EKSGLFVGHTEAMTTGSLAGHNAVRYCLGMPMLILPRSMA-LGDLIAYANHK 372


>gi|254167359|ref|ZP_04874211.1| hypothetical protein ABOONEI_2172 [Aciduliprofundum boonei T469]
 gi|197623622|gb|EDY36185.1| hypothetical protein ABOONEI_2172 [Aciduliprofundum boonei T469]
          Length = 395

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 13/164 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDV+VIG G  G  AA  AA+ G    LI  +      + C   I        + 
Sbjct: 1   MKRYEYDVLVIGAGPGGSMAARYAARHGLKVLLIEKRPEIGVPVRCAEGISRA----WMD 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-----RELYRLAMQREILSQE 115
           E++         A+  G +    + K    +   +   +        Y       + +QE
Sbjct: 57  EVEIEPQEKWIDAEIDGAKIYSPDEKSVIKLSAEQAGNEVGFVLNREYFDKYLASLAAQE 116

Query: 116 NLDVI-QGEVAGFNTEKNIISS-IVMQDNS--MIRCSTVVLTTG 155
             ++  +        E   +   +V +      +R   V+   G
Sbjct: 117 GAEIWLKSPAVEIIKEDGYVRGAVVRRFGEKVEVRAKIVIGADG 160


>gi|237795830|ref|YP_002863382.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
 gi|229263172|gb|ACQ54205.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum Ba4 str. 657]
          Length = 425

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLDNLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 322 EKSGLFVGHTEAITTGSLAGHNAVRYCLGMPMLILPRSIA-LGDLIAYANHK 372


>gi|325263403|ref|ZP_08130137.1| putative pyridine nucleotide-disulfide oxidoreductase [Clostridium
           sp. D5]
 gi|324031112|gb|EGB92393.1| putative pyridine nucleotide-disulfide oxidoreductase [Clostridium
           sp. D5]
          Length = 620

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I + Y+ IV+GGG +G  AA  AA+ G  TAL          +   P +GG     +   
Sbjct: 18  IAKEYEFIVVGGGISGVCAALAAARNGVKTAL----------IHDRPVLGGNASSEVRVS 67

Query: 62  IDALDGLMG-RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           I+      G + A  +G+   ++   K    +      D           +  +EN+D+
Sbjct: 68  INGAGRNNGYKNAIESGLVLELILRNKKVNPQYSFHVLD-----NVTWEMVEDEENIDL 121


>gi|289578328|ref|YP_003476955.1| glucose-inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
 gi|289528041|gb|ADD02393.1| glucose-inhibited division protein A [Thermoanaerobacter italicus
           Ab9]
          Length = 427

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 136/413 (32%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISS 136
               V    K P      +  D  +    ++  +L +     +         E    I  
Sbjct: 75  RHINV----KFP-GHAHASLYDVTMVEPMIRETLLEKGVTIKLMARATDVVMENSKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLDNLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++          E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANECIKAKE 379


>gi|197301740|ref|ZP_03166810.1| hypothetical protein RUMLAC_00466 [Ruminococcus lactaris ATCC
           29176]
 gi|197299180|gb|EDY33710.1| hypothetical protein RUMLAC_00466 [Ruminococcus lactaris ATCC
           29176]
          Length = 410

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 139/437 (31%), Gaps = 74/437 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +   + VIGGG +G  AA  AA+ GA   L+  K            + G G+ +    
Sbjct: 1   MKKKNRIAVIGGGVSGMTAAVTAAEQGADVLLLEQK----EMTGKKILVTGNGRCNYTN- 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-------QADRELY----------- 103
                    R  D    +F    ++K PA +             DR  Y           
Sbjct: 56  -RVQTPQCYRSDDP---EFPWKVMQKFPAEKILELFQEMGIYPKDRNGYIYPNSDQASSV 111

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
              +Q E+     ++V  G V      +      +  +    +   V+L  G+    V  
Sbjct: 112 AETLQEELERT-GVEVHTG-VRCLEIRREKNGFKICAEGKSFQADRVILCAGSKAAPVTG 169

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--- 220
                    +        +  + ++        K     R++GK I++    +  +D   
Sbjct: 170 SDGSGYDIAKKMGHSLIPVLPALVQLQCSGKFFKNIAGVRVNGKIILYTDGTEAASDTGE 229

Query: 221 --------ERLIPFSFMTDK----ITNRQIECGITR----TNLETHRIIMENIKHSAIYS 264
                     +  F             +++E  I      +  +    + +  ++    +
Sbjct: 230 LQLAAYGLSGIPVFQVSRYASRGLYEGKKVEAMIDFMPELSTEKMLDFLRKRARNRPEKT 289

Query: 265 GDIKSYGP--RYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF 322
            +    G   +    +  K  R  +        E E  +          T L +E + Q 
Sbjct: 290 AEHFLTGLFHKKLSGLWLKFARIPKEKRVGTLTEEELRHL---------TWLIKEFKVQV 340

Query: 323 IRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE---- 377
             T    E+  I   G       ++ +++   T+E++ + G++ AG+I    G       
Sbjct: 341 TGT-NSFEQAQICCGG-------VDTRQIHADTMESRLVPGVYFAGEIVDVDGICGGYNI 392

Query: 378 --AAAQGLVAGINSARK 392
             A A G++AG ++A K
Sbjct: 393 SFAVASGVLAGKSAATK 409


>gi|262404824|ref|ZP_06081378.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. RC586]
 gi|262348908|gb|EEY98047.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. RC586]
          Length = 395

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 126/403 (31%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +++  DV++IG G AG   AA AA+ G    L+ H             I G G+ +    
Sbjct: 1   MSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLLLDHSK----KPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +T  +      +Q     I C+++V  TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISTIAHTEQGFTLQTTIGEIECASLVAATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPIISTTAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPRY 274
               ++     QI    T     T  ++ +       N +  A  +  +K       P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T+L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTSL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFVGEVMDVTGW 375


>gi|170768371|ref|ZP_02902824.1| protein FixC [Escherichia albertii TW07627]
 gi|170122475|gb|EDS91406.1| protein FixC [Escherichia albertii TW07627]
          Length = 428

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  EI--DALDGL----------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            I  D  D            +  + + + +     N  +    +   +   R  +   + 
Sbjct: 57  HIIPDFADSAPVERLITHEKLAFMTERSAMTMDYCNGDETSPSQRSYS-VLRSKFDAWLM 115

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +      L +    V         +  +   D  +I   TV+L  G
Sbjct: 116 EQAEEAGALLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|172058282|ref|YP_001814742.1| hypothetical protein Exig_2273 [Exiguobacterium sibiricum 255-15]
 gi|171990803|gb|ACB61725.1| HI0933 family protein [Exiguobacterium sibiricum 255-15]
          Length = 419

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          YDVIVIGGG +G  AA  + + GA T L          +    AI G G+ ++  
Sbjct: 2  YDVIVIGGGPSGLMAALASLQAGAKTLL----LDKGSKLGRKLAISGGGRCNVTN 52


>gi|288553837|ref|YP_003425772.1| hypothetical protein BpOF4_04070 [Bacillus pseudofirmus OF4]
 gi|288544997|gb|ADC48880.1| hypothetical protein BpOF4_04070 [Bacillus pseudofirmus OF4]
          Length = 422

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+   VIVIGGG AG  A+  AA+ GA+  L          +    AI G G+ ++   
Sbjct: 1   MNKH--VIVIGGGPAGLMASIAAAEHGANVTL----LDKGNKLGRKLAISGGGRCNVTNR 54

Query: 62  IDALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR------ELYRLAMQR 109
           +D  + +      GR   +    F   ++       G   +  DR            +  
Sbjct: 55  MDLQELIAHIPGNGRFMHSPFSVFNNEDIITFFEGLGIELKEEDRGRMFPVNDKATTVVS 114

Query: 110 EILSQE---NLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +L++    N+++     V      +  + S+ +Q+   +    V++ TG
Sbjct: 115 TLLNRVHALNVNIRTNTGVKSLQFNEEKVHSVQLQNGETLEADAVIVATG 164


>gi|188585489|ref|YP_001917034.1| HI0933 family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350176|gb|ACB84446.1| HI0933 family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 412

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 137/408 (33%), Gaps = 77/408 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V++IGGG AG  AA  A++  +              +     I G G+ ++  + D    
Sbjct: 5   VVIIGGGPAGMMAAISASE--SKNTDEVILIEKNAELGKKLKITGGGRCNVTNDSDPSGI 62

Query: 68  L---------------------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
           +                     +  + +  G   +V   + G       +  D     + 
Sbjct: 63  MNNVVTNKKFLTKSLQRFTPKDLMELIEKEGCPLKV--EENGTVFPKSESSQD----IVQ 116

Query: 107 MQREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           +  ++L++ N+ +  Q EV    T+KN ++ I ++D   I    V+L TG F        
Sbjct: 117 VFHKLLNRRNVQLNYQVEVERIMTDKNHVTGIRLRDGKKITADRVILATGGFSYPKTGST 176

Query: 166 KLKIPAGRM--------------GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
                  R                +     L +      F    +KT +  +   KT   
Sbjct: 177 GSGYELARELGHTITPLRASLVPMEIREKWLTD-LSGISFKNIIIKTKSTKKSKPKTFQG 235

Query: 212 DKTEKQFADERLIPFSFMT----DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDI 267
           D     F      PF   T     +I     E  I      +H  + +        +  +
Sbjct: 236 DLLITHFGISGPAPFQLSTLMKDMEIPTEGHEIAIDFVPNSSHEKLQDEFNSLKQTNKQV 295

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS--------TALPEEIQ 319
            +   +Y P           +N     LE   + + +   N +S        T L  + +
Sbjct: 296 STILTKYWP-----------KNFVLKLLEQLNIGSTL-SMNQLSKKDKNKLITNLK-DFK 342

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
              ++ +  +++  +   G +++   ++P     T+E+KKI+GL+ AG
Sbjct: 343 ITILK-LKSIKEATVTSGGVSVKE--VDP----STMESKKITGLYFAG 383


>gi|167037553|ref|YP_001665131.1| glucose-inhibited division protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115968|ref|YP_004186127.1| glucose-inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856387|gb|ABY94795.1| glucose-inhibited division protein A [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929059|gb|ADV79744.1| glucose-inhibited division protein A [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 427

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 137/413 (33%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISS 136
               V    K P      +  D  +    ++  +L +     +         E    I  
Sbjct: 75  RHINV----KFP-GHAHASLYDVTMVEPMIRETLLEKGVTIKLMARATDVVMENSKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLDNLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++     S    E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANESIKTKE 379


>gi|289168256|ref|YP_003446525.1| flavoprotein [Streptococcus mitis B6]
 gi|288907823|emb|CBJ22663.1| flavoprotein [Streptococcus mitis B6]
          Length = 390

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 139/425 (32%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM--------IRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D+            C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKIDDQFVLKSADQSFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R I   +K   I S D+           E  +  F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR-ISSFVKGGEILSLDVL------PQLSEKDLAAFLE 270

Query: 288 RNGHQIFLE------PEGLNTDV--VYPNGISTALPEEIQHQFIRTIP----------GL 329
            N  +          PE L      VYP  +   L E+ + Q I++I            L
Sbjct: 271 ENREKSLKNALKSLLPERLAEFFVQVYPEKVK-QLTEKEREQLIQSIKDLKIPVTGKTSL 329

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
            K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 330 AKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGSN 388


>gi|317130075|ref|YP_004096357.1| geranylgeranyl reductase [Bacillus cellulosilyticus DSM 2522]
 gi|315475023|gb|ADU31626.1| geranylgeranyl reductase [Bacillus cellulosilyticus DSM 2522]
          Length = 431

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 58/189 (30%), Gaps = 28/189 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVIV+G G AG   A   AK G +  L                +GG+     + E
Sbjct: 1   MSEKFDVIVVGAGPAGTSCAYTCAKNGLNVLL----IERGEFPGAKNVMGGILYRKQMEE 56

Query: 62  I-----------DALDGLMGRVADAAGIQ---FRVLNVKKGP--AVRGPRTQADRELYRL 105
           I             +        D   +    ++ L   K P       R + D+     
Sbjct: 57  IIPEFWKEAPLERPVVEQRFWFLDKESMVTTSYKGLEWGKEPFNNFTVLRAKFDKWFAAK 116

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG--TFLRGVI 162
           A+      Q    + +  V     E   +  +     +  I    VVL  G  + L   +
Sbjct: 117 AV-----EQGATLINETVVTECIVEDGKVVGVRTDRPDGDIYADVVVLCDGVNSLLAKKL 171

Query: 163 HIGKLKIPA 171
              K   PA
Sbjct: 172 GFHKEWKPA 180


>gi|303237290|ref|ZP_07323860.1| alkyl hydroperoxide reductase, F subunit [Prevotella disiens
           FB035-09AN]
 gi|302482677|gb|EFL45702.1| alkyl hydroperoxide reductase, F subunit [Prevotella disiens
           FB035-09AN]
          Length = 519

 Score = 55.3 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 76/221 (34%), Gaps = 46/221 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I R YDV+VIGGG AG  AA  +A+ G    LI      IG                   
Sbjct: 211 IERQYDVMVIGGGPAGVSAAIYSARKGLKVGLIA---ERIG------------------- 248

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                   G+V D  GIQ    N+   P   G +  AD       ++  +     +D+ +
Sbjct: 249 --------GQVNDTTGIQ----NLISVPQTNGTQLAAD-------LKSHLSDYP-IDLFE 288

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI--PAGRMGDSPS 179
                    K+ + SI ++   + +   V++ TG   R +    + K             
Sbjct: 289 HRKIANVELKDKLKSIHVKGGEVFKAPAVIIATGANWRRLNVGDEAKYIGHGIHFCQHCD 348

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
              +    K     G   +G  A +D   I  + T  +F D
Sbjct: 349 GPFYKG--KNVAVIGGGNSGLEAAIDLAGICKNVTVFEFGD 387


>gi|21226820|ref|NP_632742.1| oxidoreductase [Methanosarcina mazei Go1]
 gi|20905119|gb|AAM30414.1| oxidoreductase [Methanosarcina mazei Go1]
          Length = 408

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLVREID 63
           SYD++V+G G AG  AA  AAK GAS  L+  K      + C   +    +   L+ E D
Sbjct: 18  SYDIVVVGAGPAGSTAALYAAKKGASVLLLDKKREIGSPIQCAGFLPDASEVKALLPEAD 77

Query: 64  ALDGLMGRVADAAGIQ----FRVL---NVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               L     D+  +Q     R++      K  AV+G     DR  Y   +  +      
Sbjct: 78  LPGALKNYP-DSCVLQPIRTQRIIPPNCNAKEFAVKG--AVLDRRRYDQYLAEQAAEAGA 134

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +++  V          S I  +    IR   ++   G
Sbjct: 135 ELMVKTRVTKIQGTTVETSGIFGK--HTIRAKAIIGADG 171


>gi|91773284|ref|YP_565976.1| geranylgeranyl reductase [Methanococcoides burtonii DSM 6242]
 gi|121684345|sp|Q12WF0|GGR2_METBU RecName: Full=Digeranylgeranylglycerophospholipid reductase 2;
           Short=DGGGPL reductase 2; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate reductase
           2; AltName: Full=Geranylgeranyl reductase 2; Short=GGR 2
 gi|91712299|gb|ABE52226.1| oxidoreductase with FAD binding domain [Methanococcoides burtonii
           DSM 6242]
          Length = 406

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 13/162 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G G  G  AA  AAK G    +I  +      + C     G+GK HL + 
Sbjct: 1   MKDHYDVIVVGAGPGGSIAAKTAAKEGLDVLMIEKRQEIGDPIRCAE---GVGKFHLKQH 57

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLAMQREILSQENL--- 117
           I+         AD  G      +  +   A      +    L R    R + ++  L   
Sbjct: 58  IEP--DPRWICADVKGSYIISPDGTRIEMAEEMSGGEVGYVLERKIFDRALANESALAGA 115

Query: 118 DVI-QGEVAGFNTEKNIISSIVM-QDNSMI--RCSTVVLTTG 155
           +V  +        E + +  I +         R   V+   G
Sbjct: 116 EVRVKTRATDLIIENDTVCGIKLMHLGKEYEVRSKIVIGADG 157


>gi|18309935|ref|NP_561869.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens str. 13]
 gi|18144613|dbj|BAB80659.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 403

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 136/415 (32%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M  +   VIV+GGG AG  A+  A+    +             +     + G G+ ++  
Sbjct: 1   MSKKK--VIVVGGGPAGIMASLTASANNEAVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G        +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYSILEKY--GHTITPIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELNLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNTNKTVLNN--LKGTLPQ---NFLKQIFEVLGLTEIKASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|289580349|ref|YP_003478815.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
 gi|289529902|gb|ADD04253.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
          Length = 458

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 8/162 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-GSMSCNPAIGGLGKGH--LV 59
             +YD++V+GGG AGC AA  AAK G    L+  KT    G ++C   I G       L 
Sbjct: 5   TEAYDIVVVGGGTAGCFAATTAAKEGLDVVLLERKTEEEGGYIACGDGIKGKSSFPDVLD 64

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           RE    +    +  + A  +    N +            DR  Y   +  E   +  +D+
Sbjct: 65  RERLKDEAFTNQGIERAIFENPQTNERLDIPFNETGGVVDRWKYGQILLEET-DRAGVDI 123

Query: 120 IQGEVA-GFNTEKNIISSIV-MQDNS--MIRCSTVVLTTGTF 157
               V          +  +  ++D      R   V+   G  
Sbjct: 124 HYNTVVNDVIQPNGTVEGVTAIRDGEALEYRSEIVIDGAGAL 165


>gi|164686727|ref|ZP_02210755.1| hypothetical protein CLOBAR_00322 [Clostridium bartlettii DSM
           16795]
 gi|164604117|gb|EDQ97582.1| hypothetical protein CLOBAR_00322 [Clostridium bartlettii DSM
           16795]
          Length = 431

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R +PG E   I+ P YA      I Y  ++P+     +  + +S LF+ G
Sbjct: 266 MTPFFNLEKLRKVPGCENAMIVDP-YAGGKGNSIRYMAVSPR--DNYMRAQGMSNLFVGG 322

Query: 368 QING-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           + +G   G+ EA   G +AG N+AR    +D +    + + IG M+     +   +
Sbjct: 323 EKSGFYVGHTEAICTGSLAGHNAARFCAGVDFLQLPESIA-IGDMLKYSNIEMHKQ 377



 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           V+VIGGG AGC A+  A K G    L+      IG  +    +   G+     E  AL  
Sbjct: 4   VVVIGGGWAGCAASISAKKAGCEVVLLERTDLLIGLGNVGGIMRNNGRYTACEEAIALGA 63

Query: 67  GLMGRVADAAGIQFRVLNVKKGPA---------VRGPRTQADRELYRLAMQREILSQENL 117
             +  + D   I   +       A             R   D ++    + R        
Sbjct: 64  NELFNITDKYAIHTNIDFPGHNHATIYNVTKVEPVVRRMLIDMDIKVKLISR-------- 115

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                 V     E NI+ ++++++   I     V TTGT
Sbjct: 116 ------VVNVECEDNILKAVILENGETIYGDAFVDTTGT 148


>gi|149020381|ref|ZP_01835273.1| hypothetical protein CGSSp23BS72_06399 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168486767|ref|ZP_02711275.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|147930683|gb|EDK81665.1| hypothetical protein CGSSp23BS72_06399 [Streptococcus pneumoniae
           SP23-BS72]
 gi|183570247|gb|EDT90775.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|332076021|gb|EGI86487.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA41301]
          Length = 390

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 137/426 (32%), Gaps = 80/426 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAGIN 388
            VAG N
Sbjct: 383 WVAGAN 388


>gi|301793901|emb|CBW36297.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
 gi|332204751|gb|EGJ18816.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA47901]
          Length = 390

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 137/426 (32%), Gaps = 80/426 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAGIN 388
            VAG N
Sbjct: 383 WVAGSN 388


>gi|224144508|ref|XP_002325314.1| predicted protein [Populus trichocarpa]
 gi|222862189|gb|EEE99695.1| predicted protein [Populus trichocarpa]
          Length = 510

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 84/251 (33%), Gaps = 24/251 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREID 63
           DVI++G G AG   A   AK G    +I         I  +      GG  K   +   D
Sbjct: 59  DVIIVGAGVAGSALAYALAKDGWRVQVIERDLAEPDRI--VGELLHAGGCLKLAELGLED 116

Query: 64  ALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADREL----YRLAMQREILSQENLD 118
            LDG+  ++     + F  +N   K  A+  P   + R      +   ++ +  S  N+ 
Sbjct: 117 CLDGIDSQIV----LSFAAINKDGKRTAISYPSNASGRSFHNGRFIQKLREKAASLPNVK 172

Query: 119 VIQGEVAGFNTEKNIISSI--VMQDNSMIRCST--VVLTTGTFLRGVIHIGKLKIPAGRM 174
           + QG V     E   I  +    +    +  S    ++   ++  G++        A R 
Sbjct: 173 LEQGTVTSLVEENGSIKGVLYKTKAGQELAASASLTIIEVPSYFVGLLLEDYNLPYANRA 232

Query: 175 G----DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT--EKQFADERLIPFSF 228
                D+   +   S  +         +  P   +G+   + KT    Q   E    F  
Sbjct: 233 YFILKDTIVIAYPISSNEIRCLVDVPGSKQPPIFNGEMASYLKTVVAPQMPPELYNAFIC 292

Query: 229 MTDKITNRQIE 239
             DK   R + 
Sbjct: 293 AIDKGNIRTMP 303


>gi|194017877|ref|ZP_03056486.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
 gi|194010529|gb|EDW20102.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
          Length = 423

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + YDVIVIGGG +G  AA  +A+ GA+  L          +    AI G G+ ++  
Sbjct: 2  KHYDVIVIGGGPSGLMAAIASAEHGATVLL----IDKGTKLGRKLAISGGGRCNVTN 54


>gi|157693406|ref|YP_001487868.1| flavoprotein [Bacillus pumilus SAFR-032]
 gi|157682164|gb|ABV63308.1| flavoprotein [Bacillus pumilus SAFR-032]
          Length = 423

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + YDVIVIGGG +G  AA  +A+ GA+  L          +    AI G G+ ++  
Sbjct: 2  KHYDVIVIGGGPSGLMAAIASAEHGATVLL----IDKGTKLGRKLAISGGGRCNVTN 54


>gi|229520122|ref|ZP_04409550.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae TM 11079-80]
 gi|229342910|gb|EEO07900.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae TM 11079-80]
          Length = 395

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 122/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +          +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAQTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F           P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTTAGLVPFTLHVQDKDDFAP--LSGIAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPRY 274
               ++     QI    T     T  ++ +       N +  A  +  +K       P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+           + T+L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LEALQTSL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|168180727|ref|ZP_02615391.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum NCTC 2916]
 gi|182668581|gb|EDT80560.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum NCTC 2916]
          Length = 425

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLENLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 322 EKSGLFVGHTEAMTTGSLAGHNAVRYCLGMPMLILPRSIA-LGDLIAYANHK 372


>gi|332296045|ref|YP_004437968.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermodesulfobium narugense DSM 14796]
 gi|332179148|gb|AEE14837.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermodesulfobium narugense DSM 14796]
          Length = 463

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 149/481 (30%), Gaps = 106/481 (22%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAA-KLGASTALITHKTSTIGSMSC---------------- 46
           ++YDVI++G G AG  AA     +L  S+ LI  K   I    C                
Sbjct: 2   KNYDVIIVGAGPAGIFAALELTKRLENSSILIIEKGHDISKRHCPMRDRKTQCLNCSPCA 61

Query: 47  -NPAIGGLG---KGHLVREIDALDGLMGRVADA------AGIQFRVLNVKKGPAVRGPRT 96
                GG G    G L    D    L   V +       + +    ++      V  P  
Sbjct: 62  LMSGWGGAGAFSDGKLTLSTDIGGNLADIVGEEKLSSLVSYVDKIWVDFGGTQQVFSPNQ 121

Query: 97  QADRELYRLAMQREILSQE----NL------DVIQGEVAGF---------------NTEK 131
           + + EL + ++  ++        +L       ++Q                       + 
Sbjct: 122 EEEMELKKRSILADLKYIPFRVRHLGTDKSPIILQNMKEELEKKIDILTSSTVDEIIVKD 181

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
           N +  + + D ++ +   V+++ G      I     ++  G    +    +    ++ + 
Sbjct: 182 NKVKGVKVSDGTVYKSKYVIVSPGRDGADWIFNEAKRL--GIEVQNNPVDIG---VRVEV 236

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLI-----PFSFMTDKITNRQIECGITRTN 246
               ++  T    + K + + K  +       +       S  +D +          R  
Sbjct: 237 PATIMEQLTKITYEIKLVYYSKLFEDKVRTFCMNPYGEVVSEQSDGVITVNGHSYADRKT 296

Query: 247 LETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
             T+  ++      E  K    Y   I          +   + R G+          EG 
Sbjct: 297 ENTNFALLVSKSFTEPFKEPISYGKYIARLANLLGGGVL--VQRLGDL--------LEGR 346

Query: 301 NTDVVY--------------PNGISTALPEEIQHQFIRTIPGLEKVNIIRPG-------- 338
            +                  P  IS  LP       I  +  L+K   + PG        
Sbjct: 347 RSTKERLLKSVVVPTLKGATPGDISLVLPYRHLKSIIEMLQALDK---LAPGVYSRYTLL 403

Query: 339 YAIEYDYINPKE-LFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKSNKL 396
           YA+E  Y + +  L   L T  I GL+ AG   G T G  +A+A G++A  +   K    
Sbjct: 404 YAVEVKYYSSRLKLDSNLMT-PIEGLYGAGDGVGVTRGLIQASASGVLAANSIINKIKNY 462

Query: 397 D 397
           +
Sbjct: 463 N 463


>gi|302386444|ref|YP_003822266.1| HI0933 family protein [Clostridium saccharolyticum WM1]
 gi|302197072|gb|ADL04643.1| HI0933 family protein [Clostridium saccharolyticum WM1]
          Length = 426

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 147/424 (34%), Gaps = 69/424 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DA 64
           VI++G G +G  AA  AA+ GAS  ++ H               G GK +L   I   +A
Sbjct: 5   VIIVGAGASGLTAAIQAARQGASVTVLEHT----AKPGKKLLSTGNGKCNLTNLITPENA 60

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY--------RLAMQREILSQEN 116
             G              V    +     G     DR  Y           +   +   E+
Sbjct: 61  YRGGQLSFIKRVLENITVGQTLEFFRDLGLVL-TDRNGYVYPNSGQAASVLNALLFELEH 119

Query: 117 LDVIQGEVAGF-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKLKIPA 171
           L V    V      E     S+V       R   ++L  G+             +L    
Sbjct: 120 LGV--SIVTDCQVIEIKKDLSLVTSKGEK-RADALILAAGSSAAPKTGSDGSGYELAKAL 176

Query: 172 GRMGDSPSNSL--FNSFMKFDFDTGRLKT--GTPARLDGKTIIWDKTEKQFADERL--IP 225
           G     P  +L       K+      ++T      ++DGKT   D+ E QF D  +  IP
Sbjct: 177 GHKIIKPLPALVQLRCREKWYKQAAGVRTEAFVTLKIDGKTAAADRGELQFTDYGISGIP 236

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIY-SGDIKSYGPRYCPSIEDKIVR 284
             F   +   R I+ G  +   E   +   NI ++  + S  +K  G R      + ++ 
Sbjct: 237 -VFQISRYAVRGIDAGQ-QVTAELDFLPSMNIDNTRQFLSERVKRLGYRRAEEFLNGVL- 293

Query: 285 FGERNGHQI--FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE----------KV 332
                 H++   L  E    +     G+   +     ++ +  + GL+          + 
Sbjct: 294 -----NHKLNGILLKEAGIMNE----GLVKNITPVQINRLVSALKGLKTNILASNSFDQA 344

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQGLVA 385
            +   G       I+  E+ P T+E+K I+GL+LAG+I    G         A + G++A
Sbjct: 345 QVCSGG-------IDTMEVDPDTMESKLINGLYLAGEILDADGICGGYNLQWAWSCGILA 397

Query: 386 GINS 389
           G  +
Sbjct: 398 GTCA 401


>gi|168206911|ref|ZP_02632916.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170661670|gb|EDT14353.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 403

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 136/415 (32%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M N+   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSNKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G        +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYGILEKY--GHTITPIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELSLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNPNKTVLNN--LKGTLPQ---NFLKQIFEVLGLTEIKASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|110801320|ref|YP_695643.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens ATCC 13124]
 gi|168209548|ref|ZP_02635173.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens B str. ATCC 3626]
 gi|168213960|ref|ZP_02639585.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens CPE str. F4969]
 gi|110675967|gb|ABG84954.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens ATCC 13124]
 gi|170712406|gb|EDT24588.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens B str. ATCC 3626]
 gi|170714596|gb|EDT26778.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens CPE str. F4969]
          Length = 403

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 136/415 (32%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M N+   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSNKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G        +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYGILEKY--GHTITPIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELSLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNPNKTVLNN--LKGTLPQ---NFLKQIFEMLGLTEIKASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|256752043|ref|ZP_05492911.1| glucose-inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749053|gb|EEU62089.1| glucose-inhibited division protein A [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 427

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 137/413 (33%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISS 136
               V    K P      +  D  +    ++  +L +     +         E    I  
Sbjct: 75  RHINV----KFP-GHAHASLYDVTMVEPMIRETLLEKGVTIKLMARATDVVMENSKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVILPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLDNLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++     S    E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANESIKTKE 379


>gi|226949747|ref|YP_002804838.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A2 str. Kyoto]
 gi|226843972|gb|ACO86638.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum A2 str. Kyoto]
          Length = 381

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R + GLEKV  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 221 MTSYYPLEKLRKLKGLEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLENLFVGG 277

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 278 EKSGLFVGHTEAMTTGSLAGHNAVRYCLGMPMLILPRSIA-LGDLIAYANHK 328


>gi|260173064|ref|ZP_05759476.1| hypothetical protein BacD2_14428 [Bacteroides sp. D2]
 gi|315921341|ref|ZP_07917581.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695216|gb|EFS32051.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 463

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIVIGGG AGC AA  AA+ GA T LI
Sbjct: 43 VDDRWDVIVIGGGPAGCTAAISAAREGAKTLLI 75


>gi|160884179|ref|ZP_02065182.1| hypothetical protein BACOVA_02156 [Bacteroides ovatus ATCC 8483]
 gi|156110521|gb|EDO12266.1| hypothetical protein BACOVA_02156 [Bacteroides ovatus ATCC 8483]
          Length = 463

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIVIGGG AGC AA  AA+ GA T LI
Sbjct: 43 VDDRWDVIVIGGGPAGCTAAISAAREGAKTLLI 75


>gi|332138114|pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
          Acidocaldarius
 gi|332138115|pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
          Acidocaldarius Co- Crystallized With Its Ligand
          Length = 453

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
          M    YDV++IGGG AG  AA   ++ G    L+  K  + IG   C  A+ 
Sbjct: 2  MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS 53


>gi|70606770|ref|YP_255640.1| hypothetical protein Saci_0986 [Sulfolobus acidocaldarius DSM
          639]
 gi|68567418|gb|AAY80347.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 452

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
          M    YDV++IGGG AG  AA   ++ G    L+  K  + IG   C  A+ 
Sbjct: 1  MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS 52


>gi|170682933|ref|YP_001742162.1| putative oxidoreductase FixC [Escherichia coli SMS-3-5]
 gi|170520651|gb|ACB18829.1| protein FixC [Escherichia coli SMS-3-5]
          Length = 428

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D   + 
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD--AWL 114

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +    E  +Q    +    V         +  +   D  +I   TV+L  G
Sbjct: 115 MEQAEEADAQLITGIR---VDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|21244819|ref|NP_644401.1| hydroxylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110520|gb|AAM38937.1| hydroxylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 449

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGS--MSCN-PAIGGLGKGHLVR 60
           DV+++GGG AGC AA   A+LG S  L+    H    IG   +  N P +  LG    V 
Sbjct: 14  DVLIVGGGPAGCTAAIALAELGWSVTLLEKAQHPRFHIGESLLPMNMPILERLG----VL 69

Query: 61  EIDALDGLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           E     G++ R AD                L+ K   A + PR Q D  L++ A    + 
Sbjct: 70  EDVRAIGVLKRGADFPNDSGGYNTFRFSHALDAKADFAFQVPRAQFDHVLFQRARAVGVD 129

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTG--TFLRGVIHIGKLK 168
           ++E + V Q    G    ++ +      D  +   R   ++  +G  TFL   + + +  
Sbjct: 130 AREQVCVEQVAFDG----EHPVLQARTADGGVQQFRPRYLLDASGRDTFLGNRLKLKRAN 185


>gi|209543718|ref|YP_002275947.1| Electron-transferring-flavoprotein dehydrogenase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|11034782|gb|AAG27079.1|AF105225_15 FixC [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531395|gb|ACI51332.1| Electron-transferring-flavoprotein dehydrogenase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 436

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 33/176 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A+ G                     L +     I  
Sbjct: 1   MTQHQFDAIVVGAGPSGNAAAYTMAQRGLRVLQIERGEYAGSKNVQGAILYSDALERI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRE 101
               P         L R +      M   A   G+  R  +  +    R    R Q D+ 
Sbjct: 59  ---IPDFREDA--PLERHVIEQRIWMMDDAGHTGMHHRSDDYNEESPNRYTIIRAQFDK- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                  R +       + +  V    T+ +  +  +   +D + I    VVL  G
Sbjct: 113 ----WFNRRVRDAGVTVLYETTVTRLITDARKRVVGVQTDRDGNGIFADVVVLAEG 164


>gi|327439178|dbj|BAK15543.1| predicted flavoprotein [Solibacillus silvestris StLB046]
          Length = 431

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 24/160 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIVIGGG +G  AA  AA+      L          +    AI G G+ ++   + A 
Sbjct: 16  YDVIVIGGGPSGLMAAIAAAEQNKKVLL----LEKGSKLGKKLAISGGGRCNVTNRLSAE 71

Query: 66  DGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQRE 110
           + +      GR   +    +   ++       G   +          +DR   +  +   
Sbjct: 72  EIIKHIPGNGRFLYSPFTVYNNEDIIAFFEGLGVALKEEDHGRMFPVSDRA--QDVVDAL 129

Query: 111 ILSQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRC 147
           +   + L V   +   V     +   I  + ++    IR 
Sbjct: 130 VNEMKRLKVEVRLHTAVNKLLMDDQKIYGVRLESGEEIRT 169


>gi|315298439|gb|EFU57694.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 16-3]
          Length = 428

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVPGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPSFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|315293382|gb|EFU52734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 153-1]
          Length = 428

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVPGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|162146278|ref|YP_001600737.1| protein fixC [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784853|emb|CAP54396.1| Protein fixC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 426

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 33/176 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A+ G                     L +     I  
Sbjct: 1   MTQHQFDAIVVGAGPSGNAAAYTMAQRGLRVLQIERGEYAGSKNVQGAILYSDALERI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRE 101
               P         L R +      M   A   G+  R  +  +    R    R Q D+ 
Sbjct: 59  ---IPDFREDA--PLERHVIEQRIWMMDDAGHTGMHHRSDDYNEESPNRYTIIRAQFDK- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                  R +       + +  V    T+ +  +  +   +D + I    VVL  G
Sbjct: 113 ----WFNRRVRDAGVTVLYETTVTRLITDARKRVVGVQTDRDGNGIFADVVVLAEG 164


>gi|194334215|ref|YP_002016075.1| geranylgeranyl reductase [Prosthecochloris aestuarii DSM 271]
 gi|194312033|gb|ACF46428.1| geranylgeranyl reductase [Prosthecochloris aestuarii DSM 271]
          Length = 398

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 26/209 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG---LGKGHLVR 60
           + YD ++ G G AGC AA   A  G    L+            +   G         L+ 
Sbjct: 2   QCYDAVISGAGPAGCSAALFLAAKGHRVLLL-----DKARFPRDKTCGDGVTAASSSLLE 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE---LYRL-------AMQRE 110
           EI  ++ +  R+ D   IQ   L+   G  VRG   +  R     Y +        +   
Sbjct: 57  EIGVMEVVKQRLGDRPEIQGVTLSSPSGTVVRGRLLKVKRFSGGDYVIPREMLDDCLVSC 116

Query: 111 ILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--LRGVIHIG-- 165
           +    ++  +    V     +     S+            ++   G++  L   +H+   
Sbjct: 117 VREHPDVTFLDNAAVTSITMDGQRARSLSTSRGD-FSGRVIIGADGSYSPLASQLHLNNT 175

Query: 166 --KLKIPAGRMGDSPSNSLFNSFMKFDFD 192
             + +  A R   S    L ++       
Sbjct: 176 SKEHQGFAIRAYFSKVEGLTDTIEIHYDR 204


>gi|309805938|ref|ZP_07699968.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167677|gb|EFO69826.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Lactobacillus iners LactinV 03V1-b]
          Length = 163

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 24/157 (15%)

Query: 52  GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G L  E+  LD L+ RVAD   +              G     DR+ +   + + I
Sbjct: 2   SNAVGLLKEEMRQLDSLIMRVADETAV------------PAGGALAVDRDSFSKKVTQII 49

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               N+ V   E+               +D   I   T  LT+ +    +      +   
Sbjct: 50  NELPNVHVHNEEIKDIP-----------KDGINIIA-TGPLTSDSLATKIKEFCGSESLH 97

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
                +P  +  +      +   R   G  A L+   
Sbjct: 98  FFDAAAPIITAESIDYNIVYKKSRYDKGEAAYLNCPM 134


>gi|295110013|emb|CBL23966.1| Predicted flavoproteins [Ruminococcus obeum A2-162]
          Length = 394

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 128/398 (32%), Gaps = 69/398 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +  VIV+GGG +G  AA VAA+ GA+  ++       G   C   + G G+ +L  +
Sbjct: 1   MSENPQVIVVGGGASGLTAAIVAAQNGAAVTVLEQN-ENPGRKIC---VTGNGRCNLTNK 56

Query: 62  I---DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
               +   G    +  +   QF + +  +     G     DR  +      +      L 
Sbjct: 57  DMRPEIFRGEHTEIVQSVLKQFSMEDTLEFFGQMGVAF-TDRNGWVYPRSNQAKCIPELM 115

Query: 119 VIQGEVAGFNTE-KNIISSIVMQDNSM--------IRCSTVVLTTGTFLRGVIHIGKLKI 169
           +++        + +  +  +  +D                V+L  G+    V        
Sbjct: 116 LLKARSLKVKIKTREKVKDVYQKDGRWKVRTEGWSYEGDRVILANGSGASQVPGSDGSGY 175

Query: 170 PA----GRMGDSPSNSLFNSFMK---FDFDTGRLKTGT-PARLDGKTIIWDKTEKQFADE 221
                 G     P  +L     K   F    G    G     LDGK +  ++ E Q  D 
Sbjct: 176 AIAEKLGHRIVRPLPALTGLRCKGNVFSVWAGVRTEGEVTLLLDGKPLYKERGELQLTDY 235

Query: 222 -----RLIPFSFMTDKITNRQIECGIT------RTNLETHRIIMENIKHSAIYSGDIKSY 270
                 +   S    +      +  ++       T  E   ++    +     S      
Sbjct: 236 GVSGIPVFQLSRYAVRALEESQKAELSINFFPEYTTEELTELLDRRRELCPYQSEAELLV 295

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           G      + DK++R        +F + + L         I T     +    +R   G+E
Sbjct: 296 GL-----LPDKLIR--------VFCKQKDL---------IQTLTSYRLT---VRGSTGME 330

Query: 331 KVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           +  +   G       ++  ++   TLE+    GL+ AG
Sbjct: 331 QAQVCSGG-------VDTTQVNAETLESNIHKGLYFAG 361


>gi|182626570|ref|ZP_02954317.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens D str. JGS1721]
 gi|177908104|gb|EDT70674.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens D str. JGS1721]
          Length = 403

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 137/415 (33%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M N+   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSNKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G    S   +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYGILEKY--GHTITSIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELNLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNPNKTVLNN--LKGTLPQ---NFLKQIFEMLGLTEIRASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|323705337|ref|ZP_08116912.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535239|gb|EGB25015.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 427

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +R IPGLE+     P   G A  I Y  I P+     ++ K +  L  AG+
Sbjct: 267 MTPFYPLEKLRKIPGLERARYEDPYSGGKANSIRYLSIAPR--NNGMKVKGLDNLLCAGE 324

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            +G  TG+ EA   G +AG NS R S  +  +   R  +   ++  +       E
Sbjct: 325 KSGLFTGHTEAMTTGCLAGHNSVRLSLGMPLLELPRNLASGDLIAYENECIETKE 379


>gi|187779013|ref|ZP_02995486.1| hypothetical protein CLOSPO_02608 [Clostridium sporogenes ATCC
           15579]
 gi|187772638|gb|EDU36440.1| hypothetical protein CLOSPO_02608 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLE V  I P YA      I Y  + P+     ++ K +  LF+ G
Sbjct: 265 MTSYYPLEKLRKIKGLESVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLDNLFVGG 321

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           + +G   G+ EA   G +AG N+ R    +  +   R  + +G +I     K
Sbjct: 322 EKSGLFVGHTEAITTGSLAGHNAVRYCLGMPMLILPRNIA-LGDLIAYANDK 372


>gi|169829659|ref|YP_001699817.1| hypothetical protein Bsph_4226 [Lysinibacillus sphaericus C3-41]
 gi|168994147|gb|ACA41687.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 417

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VR 60
           YDVIVIGGG +G  AA  A +      L          +    AI G G+ ++     V 
Sbjct: 2   YDVIVIGGGPSGLMAAIAAGERKKKVLL----LEKGAKLGKKLAISGGGRCNVTNRLPVE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY--------RLAMQREIL 112
           EI       GR   +    +   ++       G   + +            +  +   I 
Sbjct: 58  EIVKHIPGNGRFLYSPFTVYNNEDIIAFFEGLGVSLKEEDHGRMFPVSNRAQDVVDALIR 117

Query: 113 SQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + L V   +   V     ++  I  + + D S IR   V++  G
Sbjct: 118 QLQRLHVEVRLHTAVNKLVMDEEKILGVRLADGSEIRSQAVIVAVG 163


>gi|332798087|ref|YP_004459586.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332695822|gb|AEE90279.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Tepidanaerobacter sp. Re1]
          Length = 450

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 13/189 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDVIV G G +G  AA  AA+ G S  L                   +G       
Sbjct: 1   MKKNYDVIVAGAGTSGIAAALSAARNGMSVLL----IDKNAYPGGTNTAAMVGPIMTFHS 56

Query: 62  I--DALDGLMGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYRLAMQREILSQENL- 117
                + G+   + D    +   L     P  +    T  D E+ +L     + +++++ 
Sbjct: 57  GSKQIIKGIPQEIIDRLAQKDATLGHIPDPIGMVSTITPIDPEILKLVYFEMLDNEKSIT 116

Query: 118 DVIQGEVAGFNTEKNIISS--IVMQDN-SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            ++   +     E N + S  +V ++  +  +    +  TG     +  + K     GR 
Sbjct: 117 TLLHSYIYSVEREDNCVKSVTVVNKNGLATYKAKVFIDATGD--GDLAAMCKADFWFGRT 174

Query: 175 GDSPSNSLF 183
            D+ +  + 
Sbjct: 175 SDNLTQPMT 183


>gi|319940323|ref|ZP_08014674.1| flavoprotein [Streptococcus anginosus 1_2_62CV]
 gi|319810510|gb|EFW06849.1| flavoprotein [Streptococcus anginosus 1_2_62CV]
          Length = 390

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 132/417 (31%), Gaps = 66/417 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D IVIGGG AG  AA  ++  G  T L+         +    A  G G+ ++     
Sbjct: 2   NHFDTIVIGGGPAGMMAAISSSFHGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQ 108
             D L      GR   +   QF   ++       G   +           D+    +   
Sbjct: 58  LEDLLAGIPGNGRFLYSVFSQFDNHDIMNFFTDNGVALKVEDHGRVFPTTDKSFTIIEAL 117

Query: 109 REILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              + +  + ++ Q EV     +KN    I+     +  C  +++TTG            
Sbjct: 118 ERKMKELGVTIMTQTEVVS--VKKNADCFIIKSSERIWSCDRLIVTTGGKSYPSTGSTGF 175

Query: 168 KIPAGRMGDSPSNSLFNS----FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADE 221
                R  +     L  +       F      G        R +   I  D     F   
Sbjct: 176 GYEIARHFNHTITELEAAESPLLTDFPHKALQGISLANVTLRYNKYIITHDLLFTHFGLS 235

Query: 222 RLIP-----FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
                    F    + I    +     + + E     +EN +  ++ +   +    R   
Sbjct: 236 GPAALRLSSFLKGGETIYLDVLP----QFSAEDLATFLENNREKSLKNSLKQLLPERLAE 291

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
                   F E+       E E L   +        ALP  I  +       L K  + +
Sbjct: 292 FFAQP---FPEKGKQLTGKEKEELIQQLK-------ALPIPITGKM-----SLAKSFVTK 336

Query: 337 PGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
            G       +N KE+ P TLE+K +SGL+ AG+   IN  TG      A   G VAG
Sbjct: 337 GG-------VNLKEINPKTLESKLVSGLYFAGEVLDINAHTGGFNITVALCTGWVAG 386


>gi|258517344|ref|YP_003193566.1| Electron-transferring-flavoproteindehydrogenase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781049|gb|ACV64943.1| Electron-transferring-flavoproteindehydrogenase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 434

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 70/222 (31%), Gaps = 38/222 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLVREI 62
           + +D IV+GGG AG  AA V A+ G    ++       G       + G    G  + E 
Sbjct: 2   KQFDAIVVGGGPAGTTAALVLARAGMRVVVLE-----RGEYPGAKNVSGAALYGTRLLER 56

Query: 63  DALD----------------GLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYR 104
                               G M   A    I F+  N+   P  A    R + DR    
Sbjct: 57  LHPGFWLDAPIERYITRKVLGFMSEHA-LTSIDFKSENMGLPPYNAFTVIRPKFDR---- 111

Query: 105 LAMQREILSQE--NLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG---TFL 158
                 + ++E   L +    V G   E  +I  +   +D   +    V+   G      
Sbjct: 112 ---WLALKAEEAGALIISGTVVDGLIKENGVIKGVRTRRDKGELYADIVIAADGVNSFLA 168

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           R      +LK     +G     +L    ++  F     +  T
Sbjct: 169 REAGLQRELKANELSLGIKEIIALDRQTIEERFQLSGNEGVT 210


>gi|258623110|ref|ZP_05718122.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584593|gb|EEW09330.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 398

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 124/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++  DV+VIG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKKVDVVVIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +          +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISAIAQTEQGFTLQTTIGDIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I  + + +           
Sbjct: 177 GYKIAEQFGLPVISTTAGLVPFTLHVQDKEDFAP--LSGIAIPVEMSAEC-GKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPR 273
           F    ++     QI    T     T  ++ +       N +  A  +  +K       P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQTLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+           + T+L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LEALQTSL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFVGEVMDVTGW 378


>gi|291550400|emb|CBL26662.1| conserved hypothetical protein TIGR00275 [Ruminococcus torques
           L2-14]
          Length = 406

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 130/425 (30%), Gaps = 62/425 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + +IGGG +G  AA  AA+ GA   L+      +G        G     +  ++      
Sbjct: 4   IAIIGGGASGMMAAIFAARKGAKVLLLEQN-DRLGKKILVTGNGRCNYTNTYQDTSCYRS 62

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY------RLAMQREILSQE----NL 117
                      QF V  V       G   + DR  Y      + +  R++L QE     +
Sbjct: 63  EQPDFITRVLDQFPVEKVIAFFRELGIYPK-DRNGYLYPYSDQASAVRDVLEQEVYRLGV 121

Query: 118 DVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           DV  G    G        S +     S +    V+L  G+                R   
Sbjct: 122 DVRTGISCTGIQKTNERFS-LQTSHGS-LTVDQVILCNGSKAAPSTGSDGSGYALARQLG 179

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
                +  +           +     R  GK  ++   E   AD   +  +         
Sbjct: 180 HQIIPVLPALCALHCTGKHFRAIAGVRAQGKVSLFVDGELTAADTGELQLTAYGISGIPV 239

Query: 237 QIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF-- 294
                     L   + ++  +     YS D           ++++  R  E+   Q F  
Sbjct: 240 FQISRYASKALYEQKEVVAMLDFLPEYSVDEVKI------LLKERANRQPEKTAEQFFTG 293

Query: 295 LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE---------YDY 345
           L  E L T  +          +  + +           +I R  + I+           Y
Sbjct: 294 LFHEKLATVWL-------KFTKIKKEKLCGN---FTDADIQRLAWMIKEFKSPVIKTNSY 343

Query: 346 ---------INPKELFP-TLETKKISGLFLAGQ------INGTTGY--EEAAAQGLVAGI 387
                    ++  ++ P T+E++ + GL+ AG+      I G  GY    A A G VAG 
Sbjct: 344 EQAQICCGGVDTTQINPETMESRLVPGLYFAGELVDVDAICG--GYNLTWAWASGYVAGC 401

Query: 388 NSARK 392
           ++A  
Sbjct: 402 SAASA 406


>gi|331000989|ref|ZP_08324625.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329569764|gb|EGG51528.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 538

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 43/186 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDV++IG G AG   A  A + G    +       + ++  N AI G      V  
Sbjct: 60  FDDEYDVVIIGSGFAGMACALKAGQAGKKVLI----LEKMPTVGGNSAICGGNVACPVNP 115

Query: 62  IDALDG-----------------------LMGRVADAAGIQFR---------VLNVKKGP 89
           + A  G                       L+G +AD      +         V N     
Sbjct: 116 VQAAQGIKDSKELFIADCLKDGLGINYPNLLGTIADRCNDTIKMVVDCGCEFVPNKMLFE 175

Query: 90  AVRG-PRTQADR----ELYRLAMQREILSQENLDVIQGEVAG--FNTEKNIISSIVMQDN 142
           A    PR+   +      Y + M  E+    N+ ++           E   +  +  +  
Sbjct: 176 AGHSVPRSYEIKAGTGSGYIIPMHNELKKLPNVKIMTRAKFDDFILDENGRVVGVTYRKG 235

Query: 143 SMIRCS 148
                 
Sbjct: 236 YRFDSK 241


>gi|303257726|ref|ZP_07343738.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium 1_1_47]
 gi|302859696|gb|EFL82775.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium 1_1_47]
          Length = 515

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 43/186 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDV++IG G AG   A  A + G    +       + ++  N AI G      V  
Sbjct: 37  FDDEYDVVIIGSGFAGMACALKAGQAGKKVLI----LEKMPTVGGNSAICGGNVACPVNP 92

Query: 62  IDALDG-----------------------LMGRVADAAGIQFR---------VLNVKKGP 89
           + A  G                       L+G +AD      +         V N     
Sbjct: 93  VQAAQGIKDSKELFIADCLKDGLGINYPNLLGTIADRCNDTIKMVVDCGCEFVPNKMLFE 152

Query: 90  AVRG-PRTQADR----ELYRLAMQREILSQENLDVIQGEVAG--FNTEKNIISSIVMQDN 142
           A    PR+   +      Y + M  E+    N+ ++           E   +  +  +  
Sbjct: 153 AGHSVPRSYEIKAGTGSGYIIPMHNELKKLPNVKIMTRAKFDDFILDENGRVVGVTYRKG 212

Query: 143 SMIRCS 148
                 
Sbjct: 213 YRFDSK 218


>gi|182677485|ref|YP_001831631.1| electron-transferring-flavoprotein dehydrogenase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633368|gb|ACB94142.1| Electron-transferring-flavoprotein dehydrogenase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 433

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M +  +D IV+G G +G   A   A  G                     L       I  
Sbjct: 1   MADEKFDAIVVGAGPSGNACAYTLATRGLKVLQLERGEYPGSKNVQGAILYADALEKI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
               P         L R I      M       G  +R  +  +    +  R    R  +
Sbjct: 59  ---IPDFREDA--PLERHIIEQRLWMMDDKSYCGAHYRSEDFNE---DKPNRYTIIRAPF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                R +     L + +  V     +  + +  +   +D + I    VVL  G
Sbjct: 111 DKWFSRRVSEAGALILCETTVTELVRDAHDKVIGVRTDRDGAAIYADIVVLAEG 164


>gi|205374447|ref|ZP_03227243.1| flavoprotein [Bacillus coahuilensis m4-4]
          Length = 441

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 20/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VR 60
           YDVI+IGGG +G  AA  A + GA T L+         +    AI G G+ ++     V 
Sbjct: 2   YDVIIIGGGPSGLMAAIAAGEHGARTLLV----DKGNKLGRKLAISGGGRCNVTNRLPVE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREILS 113
           EI       GR   +A   F   ++       G   + +             ++   +L 
Sbjct: 58  EIIKHIPGNGRFLYSAFSLFNNEDIIAFFENLGIELKEEDHGRMFPVSNKAQSVVDALLR 117

Query: 114 QE---NLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +    ++D+     V     + + ++ I++Q    I   +VV++ G
Sbjct: 118 RMDELHIDIRTNTPVERVIYDNHQVAGILLQSGERIDSPSVVISVG 163


>gi|315303864|ref|ZP_07874345.1| YtfP [Listeria ivanovii FSL F6-596]
 gi|313627756|gb|EFR96408.1| YtfP [Listeria ivanovii FSL F6-596]
          Length = 420

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            +DVIVIGGG +G  AA  AA+      LI        K    G   CN          +
Sbjct: 2   DFDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPADEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G++ +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFERLGVELKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M   +        +Q  V   N     +  + ++D   I    VV+  G
Sbjct: 116 MINRMEKLGVKIYMQTAVKQVNYADGKVVGVTLKDGQEITTQAVVVAVG 164


>gi|298480099|ref|ZP_06998298.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. D22]
 gi|298273908|gb|EFI15470.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. D22]
          Length = 516

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      IG          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERIGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL-------------LRYPVDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + D++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQDRL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K +A+   D K+   R
Sbjct: 400 PNVEVFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|295085530|emb|CBK67053.1| alkyl hydroperoxide reductase, F subunit [Bacteroides xylanisolvens
           XB1A]
          Length = 516

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      IG          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERIGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL-------------LRYPVDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + D++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQDRL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K +A+   D K+   R
Sbjct: 400 PNVEVFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|226320343|gb|ACJ24907.2| squalene epoxidase [Panax ginseng]
          Length = 545

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I         I      P     +  LG    V
Sbjct: 78  DVIIVGAGVAGSALAYTLAKDGRRVHVIERDLTEQDRIVGELLQPGGYLKLVELGLEDCV 137

Query: 60  REIDALDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            EIDA   + G      G   R+   ++K  A    R+      +   M+ +  S  N+ 
Sbjct: 138 NEIDAQ-RVFGYALYMDGKNTRLSYPLEKFHADVAGRS-FHNGRFIQRMREKAASLPNVR 195

Query: 119 VIQGEVAGFNTEKNIISSI--VMQDNSMIRCSTVVLTT 154
           + QG V     +K  +  +    ++   +  +   LT 
Sbjct: 196 MEQGTVTSLVEQKGTVKGVRYKTKNGQEMSAAYAPLTI 233


>gi|160934314|ref|ZP_02081701.1| hypothetical protein CLOLEP_03185 [Clostridium leptum DSM 753]
 gi|156866987|gb|EDO60359.1| hypothetical protein CLOLEP_03185 [Clostridium leptum DSM 753]
          Length = 421

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 149/431 (34%), Gaps = 73/431 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL--VREI 62
            +DV V+GGG AG  AAA AAKLGA T L          +     I G G+ ++    ++
Sbjct: 12  EFDVAVVGGGPAGMMAAASAAKLGARTVL----LEKNAKLGRKLMITGKGRCNVCNQCDV 67

Query: 63  DALDGLM---GRVADAAGIQFRVLNVKKGP--------AVRGPRT--QADR-ELYRLAMQ 108
            +  G +   GR   +A  +F  L+               RG R    +DR      AM+
Sbjct: 68  QSFIGAIPGNGRFLYSAVNRFSPLDTMDYFEGLHVPLKTERGNRVFPVSDRAADIVDAMR 127

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF----LRGVIHI 164
            ++ +   + V+Q ++     +   +  +       I+   V++  G             
Sbjct: 128 EDVEA-SGVHVLQEDIKALIIKDGAVKGVKAASGKRIQSDGVIVACGGLSYPGTGSTGDG 186

Query: 165 GKLKIPAGRMGDSPSNSL--------------FNSFMKFDFDTGRLKTGTPARLDGKTII 210
            +L   AG     P  SL                S           K G     D   ++
Sbjct: 187 YRLARQAGHTIVPPRPSLVPLVCREDWCQELQGLSLRNIAVQVIDRKQGKEIYRDFGEML 246

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRT---NLET--HRIIMENIK-HSAIYS 264
           +       +   ++  S     +   + E  I      N E    R+  +  K  +  +S
Sbjct: 247 FTHFGV--SGPVILSASAHMRDLAPERYEIHIDLKPGLNFEQLDLRLQRDFQKFQNRDFS 304

Query: 265 GDIKSYGPRYCPSIEDKIVRFG-ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
             ++   P+    +   +     E+  HQI    E      +    +  +LP  +     
Sbjct: 305 NSLQELLPKKLIPVAVNLSGIPGEKKCHQIS-RQE-----RMNFGRLLKSLP--VTISGF 356

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE----- 377
           R I   E+  +   G ++        EL P T+E+K + GLF AG++    GY       
Sbjct: 357 RPI---EEAIVTAGGVSV-------HELSPKTMESKLVKGLFFAGEVLDVDGYTGGFNLQ 406

Query: 378 -AAAQGLVAGI 387
            A + G +AG 
Sbjct: 407 IAFSTGYLAGN 417


>gi|303260004|ref|ZP_07345978.1| hypothetical protein CGSSp9vBS293_04373 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261410|ref|ZP_07347358.1| hypothetical protein CGSSp14BS292_08745 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264077|ref|ZP_07349998.1| hypothetical protein CGSSpBS397_05722 [Streptococcus pneumoniae
           BS397]
 gi|303267615|ref|ZP_07353455.1| hypothetical protein CGSSpBS457_11014 [Streptococcus pneumoniae
           BS457]
 gi|303269551|ref|ZP_07355315.1| hypothetical protein CGSSpBS458_09376 [Streptococcus pneumoniae
           BS458]
 gi|302637544|gb|EFL68031.1| hypothetical protein CGSSp14BS292_08745 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638923|gb|EFL69384.1| hypothetical protein CGSSpBS293_04373 [Streptococcus pneumoniae
           SP-BS293]
 gi|302640936|gb|EFL71319.1| hypothetical protein CGSSpBS458_09376 [Streptococcus pneumoniae
           BS458]
 gi|302642845|gb|EFL73152.1| hypothetical protein CGSSpBS457_11014 [Streptococcus pneumoniae
           BS457]
 gi|302646482|gb|EFL76708.1| hypothetical protein CGSSpBS397_05722 [Streptococcus pneumoniae
           BS397]
          Length = 390

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 137/426 (32%), Gaps = 80/426 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLEKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAGIN 388
            VAG N
Sbjct: 383 WVAGAN 388


>gi|38698|emb|CAA39093.1| fixC product [Azorhizobium caulinodans ORS 571]
          Length = 435

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 27/173 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           MI+  +D IV+G G AG  A    A+ G        +             G +    ++ 
Sbjct: 1   MIDEKFDAIVVGAGMAGNAATLTLARRGLKVL----QLERGEYSGSKNVQGAILYADMLE 56

Query: 60  ------REIDALDGLMGRVA-----DAA--GIQFRV--LNVKKGPAVRGPRTQADRELYR 104
                 RE       +         D +  G+ +R    N +K       R Q D+  + 
Sbjct: 57  KLVPDFRETRRWSAHLVEQRFWMLDDRSHVGLHYRSEDFNEEKPNRYTIIRAQFDK-WFS 115

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVM-QDNSMIRCSTVVLTTG 155
             ++    +     + +  V     +    +  +   +    I    VVL  G
Sbjct: 116 SKVKEAGATV----LCETTVTELVQDAYGKVIGVKTDRSGGQIHADVVVLAEG 164


>gi|223939719|ref|ZP_03631591.1| tryptophan halogenase [bacterium Ellin514]
 gi|223891590|gb|EEF58079.1| tryptophan halogenase [bacterium Ellin514]
          Length = 424

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIGGG AG  AAA+ A+ G    ++              ++       L R 
Sbjct: 1   MKTDYDVIVIGGGPAGSSAAAILAEKGHKVLVLE--REKFPRYHVGESLLPFTFHPLQRL 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLA-MQREILSQENLD 118
                    +      +QF       G A +      + D+++ +   + R    Q  LD
Sbjct: 59  GLVEKLRASQFVKKFSVQFV---SPSGRASQPFYFFNRYDKDVAQTWQVLRSEFDQIVLD 115

Query: 119 ---------VIQGEVAGFNTEKNIISSIVMQD 141
                    + +  V     + + +     +D
Sbjct: 116 HAREKGAHVIEEITVTELLKDGDRVIGARTKD 147


>gi|149187904|ref|ZP_01866200.1| alkyl hydroperoxide reductase, large subunit [Vibrio shilonii AK1]
 gi|148838300|gb|EDL55241.1| alkyl hydroperoxide reductase, large subunit [Vibrio shilonii AK1]
          Length = 530

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N     A  GP+  A  E +      E+       + +   A
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEV-------ITEQRAA 291

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                ++       +V++  ++++  +V+ +TG   R     G        +      D 
Sbjct: 292 NIIDSEDTDDGYTHVVLESGAVLKARSVITSTGARWREMNVPGEQEYRNKGVAYCPHCDG 351

Query: 178 P 178
           P
Sbjct: 352 P 352


>gi|225856417|ref|YP_002737928.1| hypothetical protein SPP_0752 [Streptococcus pneumoniae P1031]
 gi|225725907|gb|ACO21759.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
          Length = 391

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   DN            C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDNQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDEVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|168206146|ref|ZP_02632151.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
 gi|170662415|gb|EDT15098.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium perfringens E str. JGS1987]
          Length = 263

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-D 66
           V+VIGGG +G  AA  A K+GA   L       +G  +    +   G+     E+ A+  
Sbjct: 3   VVVIGGGWSGVAAAIEAKKMGADVVLFEKTDLLLGLGNVGGIMRNNGRYTASEELIAMGG 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G +  + D       +                D  L    ++R + S   L +    V+ 
Sbjct: 63  GDLINITDKVSRHKDIPFP-----GHEHAWLYDVNLVEGEVKRYVES---LGIETKMVSR 114

Query: 127 FNT---EKNIISSIVMQDNSMIRCSTVVLTTGT 156
                 E N I  +   D         + TTG+
Sbjct: 115 IIDIKQEDNKILGVYTSDGQYYNGDVFIETTGS 147


>gi|153810808|ref|ZP_01963476.1| hypothetical protein RUMOBE_01192 [Ruminococcus obeum ATCC 29174]
 gi|149833204|gb|EDM88286.1| hypothetical protein RUMOBE_01192 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VI++GGG AG  A+ +AA+ G    L          +     I G G+ ++    D  + 
Sbjct: 4   VIIVGGGAAGMLASVIAARNGCEVLLF----EKNEKLGKKVYITGKGRCNVTNNCDPEEL 59

Query: 68  LMGRVADA-----------AGIQFRVLNVKKGP--AVRGPRT--QADRELYRLAMQREIL 112
           L   +++            +     +L     P    RG R    +D     +     ++
Sbjct: 60  LQAVMSNPKFLYSAFYSFTSQDMMHLLEEAGVPLKTERGNRVFPVSDHSSDIIHGLERLM 119

Query: 113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + ++ +    EV    TE  I S + ++D+++    +V++ TG
Sbjct: 120 KKYHVQIRLHCEVLEILTENGIASGVKLKDHTVYTSDSVIVATG 163


>gi|73539443|ref|YP_299810.1| monooxygenase, FAD-binding:FAD dependent oxidoreductase:tryptophan
           halogenase [Ralstonia eutropha JMP134]
 gi|72122780|gb|AAZ64966.1| Monooxygenase, FAD-binding:FAD dependent oxidoreductase:Tryptophan
           halogenase [Ralstonia eutropha JMP134]
          Length = 409

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 24/218 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M ++  DV++IG G AG  AA +  + G    ++     T        +IG       + 
Sbjct: 1   MEDQFADVLIIGAGPAGSVAAGLLRRRGIGVLVLE--KETFPRF----SIGESLLPQSME 54

Query: 61  EIDALDGLMGRVADAAGIQFRV-------------LNVKKGPAVRGPRTQADRELYRLAM 107
            I+A    M R    AG Q++                  K  A  G   Q  R  +   +
Sbjct: 55  YIEAAG--MLRAVVEAGFQYKNGAAFARGDRYVDFDFRDKFSAGWGTTYQVQRADFDHVL 112

Query: 108 QREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIR-CSTVVLTTGTFLRGVIHIG 165
            RE   Q      +  V G +      + +++  D +  R  S  +L    F R +  + 
Sbjct: 113 IREAEKQGAEVRFRHLVTGVDVSGARPVVTVLDPDGNSYRVTSRFLLDASGFGRILPRLL 172

Query: 166 KLKIPAG-RMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
           +L+ P+G  +  +    + +  M   FD  +++ G   
Sbjct: 173 QLESPSGFPVRSAIFTHVEDRVMPGTFDRNKIRIGIHP 210


>gi|222151681|ref|YP_002560837.1| hypothetical protein MCCL_1434 [Macrococcus caseolyticus JCSC5402]
 gi|222120806|dbj|BAH18141.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 414

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 135/435 (31%), Gaps = 74/435 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++ IVIGGG +G  AA  A++ G S  L          +     I G G+ ++   +   
Sbjct: 2   FNTIVIGGGPSGLMAAISASENGKSVLL----IDKKDKLGRKLQISGGGRCNVTNRVSHE 57

Query: 66  --------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----RLAMQREILS 113
                   +G     A      F +++  +   VR       R          +   +  
Sbjct: 58  ELIQHLPGNGKFLYSAFNTFDNFAIIDYFENLGVRLKEEDHGRMFPVTDNAKDVVNALKQ 117

Query: 114 Q---ENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHIG 165
           Q    N+D+    +VA    +   +  + ++D + I    V++ TG              
Sbjct: 118 QLVKNNVDIRTNQKVASLLVQD-TVKGVRLEDATEIYADNVIIATGGKSVPHTGSTGDGY 176

Query: 166 KLKIPAG-----------RMGDSPSNSLFNSFMKFDFD---TGRLKTGTPARL--DGKTI 209
           +    AG            +  +       +             L+     R+      I
Sbjct: 177 EFAKQAGHTITELFPTEVPITSNAPFIKAKTLQGLSLRDVALSVLRKNGKPRITHQMDMI 236

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNR-----QIECG----ITRTNLETHRIIMENIKHS 260
                    A  R   F +   K   +      I+C     I        ++I  N    
Sbjct: 237 FTHFGISGPAALRCSQFVYKEQKSQKKQDITMMIDCFPQESIGALKNRITKMIDTNKDK- 295

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           AI +        RY   + ++     E NGH +  E      +++   G           
Sbjct: 296 AIKNSLKGLVSERYLLFLLEQAGLNLEDNGHHLKKEAVEQFCELL--KGFKFT------- 346

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG--- 374
             +     +EK  +   G +++   I P     T+++K    L+  G+   I+G TG   
Sbjct: 347 --VNGTQSIEKAFVTGGGVSVKE--IVP----ATMQSKLHDNLYFCGEVLDIHGYTGGYN 398

Query: 375 YEEAAAQGLVAGINS 389
              A   G +AG+N 
Sbjct: 399 ITSALVTGYIAGLNC 413


>gi|224144513|ref|XP_002325316.1| predicted protein [Populus trichocarpa]
 gi|222862191|gb|EEE99697.1| predicted protein [Populus trichocarpa]
          Length = 528

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPAIGGLGKGHLVREI 62
           DVI++G G AG   A   AK G    +I    +     +G +    A G +    L  E 
Sbjct: 59  DVIIVGAGVAGSALAYALAKDGWRVQVIERDLAEPDRIVGEVLH--AGGCIKLAELGLEA 116

Query: 63  DALDGLMGRVADAAGIQFRVLNVKK--GPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           D LDG+  ++  +     +         PA    R       +   ++ +  S  N+ + 
Sbjct: 117 DCLDGIDSQIVFSFAAVHKDGKRTAISYPANASGRG-FHNGRFIQKLREKAASLPNVKLE 175

Query: 121 QGEVAGFNTEKNIISSI--VMQDNSMIRCST 149
           QG V     E   I  +    +    +  S 
Sbjct: 176 QGTVTSLVEENGSIKGVLYKTKAGQELAASA 206


>gi|295109912|emb|CBL23865.1| conserved hypothetical protein TIGR00275 [Ruminococcus obeum
           A2-162]
          Length = 418

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 138/404 (34%), Gaps = 70/404 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV+GGG AG  A+ +AAK G +  L          +     I G G+ ++    D  + 
Sbjct: 4   VIVVGGGAAGMLASIIAAKNGCAVTLF----EKNEKLGKKIYITGKGRCNVTNNCDPEEL 59

Query: 68  LMGRVAD-----------AAGIQFRVLNVKKGP--AVRGPRT--QADRELYRLAMQREIL 112
           L   V++           ++    ++L     P    RG R    +D     +     ++
Sbjct: 60  LHAVVSNPKFLYSAFYSFSSQDMMQLLEDAGVPLKTERGNRVFPVSDHSSDIIHGLERLM 119

Query: 113 SQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF----LRGVIHIGKL 167
            +  + + ++ EV    TE  I++ I + DN +     V++ TG              + 
Sbjct: 120 RKYRVQIHLRSEVKNLLTENGIVTGIQLTDNKVSTADAVIVATGGLSYPTTGSTGDGYRF 179

Query: 168 KIPAGRMGDSPSNSLF-----NSFMKFDFDTGRLKTGTPARLDGKTI--IWDKTE-KQFA 219
               G        SL       +++               +   KT+   + +     F 
Sbjct: 180 AAETGHTVTECMPSLVPLTTKEAYIPLMKGLSLRNVELTVKRGKKTVYQDFGEMMFTHFG 239

Query: 220 DERLIPFS-------FMTDKITNR---QIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
               +  S       F+           ++  ++   L+  RI+ E    S+  +   K+
Sbjct: 240 ITGPLVLSASARIGKFLQKGEELDAYLDLKPALSHEQLD-DRILRE---FSSTQNKQFKN 295

Query: 270 Y-GPRYCPSIEDKIVRFG----ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             G  +  S+   I+  G    ++  H I  E       ++       + P  I      
Sbjct: 296 VIGVLFPSSLTPVIIGLGPIPEDKVIHDISREERMAFGSLI------KSFPFTIT----- 344

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
            + G  +  I R G ++        E+ P T+E+KKI  L+  G
Sbjct: 345 GLGGFSEAVITRGGVSVR-------EIQPGTMESKKIKNLYFIG 381


>gi|193212855|ref|YP_001998808.1| geranylgeranyl reductase [Chlorobaculum parvum NCIB 8327]
 gi|193086332|gb|ACF11608.1| geranylgeranyl reductase [Chlorobaculum parvum NCIB 8327]
          Length = 399

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 26/210 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG---LGKGHLVR 60
           + +DV++ G G AGC AA   A+ G   ALI            +   G         L+ 
Sbjct: 2   KPFDVVISGAGPAGCTAALSLARKGLRVALI-----DKAQFPRDKTCGDGVTPASVRLLE 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREIL------- 112
           E+  ++ +  RV      +   L    G  V+G  +Q  DR      + R +L       
Sbjct: 57  ELGVVEVVRQRVGPLTVFKGITLFSPDGAVVQGRLSQTGDRSSESYVIPRSLLDDCFVTC 116

Query: 113 --SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF------LRGVIH 163
             + E++      E        +    +            +V   G +      L  +  
Sbjct: 117 VKAHESISFFDNTESRELIINGDSARGLSTS-GGEFYGKCIVAADGVYSPIAAQLGLLNR 175

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
             + +  A R   S  N L +S      + 
Sbjct: 176 QKEQQGFAMRAYFSNVNGLSDSIELHYDNL 205


>gi|293365052|ref|ZP_06611769.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus oralis
           ATCC 35037]
 gi|307702238|ref|ZP_07639198.1| HI0933-like family protein [Streptococcus oralis ATCC 35037]
 gi|291316502|gb|EFE56938.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus oralis
           ATCC 35037]
 gi|307624251|gb|EFO03228.1| HI0933-like family protein [Streptococcus oralis ATCC 35037]
          Length = 393

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 134/423 (31%), Gaps = 74/423 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKVDDQFVLKSADQNFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVAFLE 270

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ-------HQFIRTIPGLEKVN------- 333
            N  +                 +S A PE+++        Q +++I  L+          
Sbjct: 271 ENREKSLKNALKTLLPERLAEFLSQAYPEKVKQLTEKEREQLLQSIKALKIPVTGKMSLA 330

Query: 334 --IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVA 385
              +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G VA
Sbjct: 331 KSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVIDINAHTGGFNITSALCTGWVA 385

Query: 386 GIN 388
           G N
Sbjct: 386 GSN 388


>gi|260461257|ref|ZP_05809505.1| Electron-transferring-flavoprotein dehydrogenase [Mesorhizobium
           opportunistum WSM2075]
 gi|319785434|ref|YP_004144910.1| electron-transferring-flavoprotein dehydrogenase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|259032794|gb|EEW34057.1| Electron-transferring-flavoprotein dehydrogenase [Mesorhizobium
           opportunistum WSM2075]
 gi|317171322|gb|ADV14860.1| Electron-transferring-flavoprotein dehydrogenase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 435

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 48/169 (28%), Gaps = 19/169 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAI 50
           MIN  +D IVIG G +G  AA   A  G     +                  +M      
Sbjct: 1   MINEEFDAIVIGAGMSGNAAAYTMASDGLKVLQLERGEYPGSKNVQGAIMYANMLEKIIP 60

Query: 51  GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRELYRLAMQ 108
                  L R +      +       GI +R  +  +    R    R Q D+        
Sbjct: 61  DFRDDAPLERHLVEQRLWVMDETSHTGIHYRSEDFNEVSPNRYTIIRAQFDK-----WFS 115

Query: 109 REILSQENLDVIQGEVAGFN-TEKNIISSIVMQD-NSMIRCSTVVLTTG 155
           R +       + +  V      +K  +  +        I    VVL  G
Sbjct: 116 RRVRQAGATLLCETTVTELVRDDKGKVIGVRTDRAGGAIYADVVVLAEG 164


>gi|145224870|ref|YP_001135548.1| geranylgeranyl reductase [Mycobacterium gilvum PYR-GCK]
 gi|315445198|ref|YP_004078077.1| geranylgeranyl reductase family protein [Mycobacterium sp. Spyr1]
 gi|145217356|gb|ABP46760.1| geranylgeranyl reductase [Mycobacterium gilvum PYR-GCK]
 gi|315263501|gb|ADU00243.1| geranylgeranyl reductase family protein [Mycobacterium sp. Spyr1]
          Length = 393

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 25/170 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV++ GGG +G  AA  AA+ GA   ++  K     +  C   +      +L + 
Sbjct: 1   MTQRYDVVIAGGGPSGSAAAWQAAQTGAKVVVLD-KAQFPRAKPCGDGLTARAVSYLQK- 58

Query: 62  IDALDGLMGRVADAAGIQFRV------------LNVKKGPAVRGPRTQADRELYRLAMQR 109
                  MG +AD      RV            L+  K P +        RE     + +
Sbjct: 59  -------MG-LADEVATYHRVNRVTVFSPSRWELSFPKRPGMPDHGHTVSREHLDTVLLK 110

Query: 110 EILSQENLDVIQG-EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTF 157
              S    ++ QG EVAG   +    +  ++++    +    V+   G +
Sbjct: 111 HAES-AGAEIRQGAEVAGPEFDASGRVVGVILKSGEKVLGDAVIAADGAY 159


>gi|313637175|gb|EFS02703.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171]
          Length = 420

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            +DVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DFDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFENLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M   +        +Q  V   N     +  + ++D   I  + V++  G
Sbjct: 116 MIARMEKLGVKIYMQTAVKQVNYADGKVVGVTLKDGQEISANAVIVAVG 164


>gi|313632635|gb|EFR99618.1| YtfP [Listeria seeligeri FSL N1-067]
          Length = 420

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            +DVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DFDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFENLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M   +        +Q  V   N     +  + ++D   I  + V++  G
Sbjct: 116 MIARMEKLGVKIYMQTAVKQVNYADGKVVGVTLKDGQEISANAVIVAVG 164


>gi|212638276|ref|YP_002314796.1| putative flavoprotein [Anoxybacillus flavithermus WK1]
 gi|212559756|gb|ACJ32811.1| Predicted flavoprotein [Anoxybacillus flavithermus WK1]
          Length = 424

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   +YDV+VIGGG +G  AA  A +      L          +    AI G G+ ++  
Sbjct: 1   MKVMTYDVVVIGGGPSGLMAAIAAGERSKRVLL----LDKGDKLGRKLAISGGGRCNVTN 56

Query: 61  EIDALDGLM------GRVADAAGIQFRVLNVKKGPAVRG--------PRTQADRELYRLA 106
               +D L+      GR    A   F   ++ +     G         R     +  +  
Sbjct: 57  R-RPVDELIQHIPGNGRFLYGAFSMFNNEDIIRFFERLGVPLKEEDHGRMFPMSDSAQSV 115

Query: 107 MQREILSQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +Q  +   + L V   +   V     +   +  + +Q   +I+   VV+  G
Sbjct: 116 VQALLRELKRLRVDIRVHTPVKDIEYKDGAVYGVRLQTGEVIQTKAVVVAVG 167


>gi|146303464|ref|YP_001190780.1| geranylgeranyl reductase [Metallosphaera sedula DSM 5348]
 gi|145701714|gb|ABP94856.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase [Metallosphaera
           sedula DSM 5348]
          Length = 453

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 21/173 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLV 59
           M   +YDV++IGGG AG  AA   A  G    LI  K  + IG   C  A+      +L 
Sbjct: 1   MKQLTYDVLIIGGGFAGSTAAWHLANKGLKILLIDSKPWNRIGDKPCGDAVSKEHFDNLG 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                    + +  D  GI+    ++     V+G   + +   Y   + RE         
Sbjct: 61  MPY-PEGEQLEQKID--GIKLYSPDMSTEWTVKGEGFEINAPAYTQRILREARD------ 111

Query: 120 IQGEVAGF------NTEKNIISSIVMQD-----NSMIRCSTVVLTTGTFLRGV 161
              EV           E   +   V+ D        +R   V+  TG      
Sbjct: 112 RGVEVMDLTTAMKPILEDGFVKGAVIFDRRKEEQIEVRAKMVIEATGYSRSFR 164


>gi|332095329|gb|EGJ00352.1| protein fixC [Shigella boydii 5216-82]
          Length = 428

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----- 111

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E   +  + +I G  V         +  +   D  +I   TV+L  G
Sbjct: 112 -AWLMEQAEEAGVQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|256025360|ref|ZP_05439225.1| putative oxidoreductase FixC [Escherichia sp. 4_1_40B]
          Length = 428

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----- 111

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E   +  + +I G  V         +  +   D  +I   TV+L  G
Sbjct: 112 -AWLMEQAEEAGVQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|120403049|ref|YP_952878.1| geranylgeranyl reductase [Mycobacterium vanbaalenii PYR-1]
 gi|119955867|gb|ABM12872.1| geranylgeranyl reductase [Mycobacterium vanbaalenii PYR-1]
          Length = 393

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 25/170 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV++ GGG +G  AA  AA+ GA   ++  K     +  C   +      +L + 
Sbjct: 1   MTQRYDVVIAGGGPSGSAAAWQAAQTGAKVVVLD-KAQFPRAKPCGDGLTARAVSYLQK- 58

Query: 62  IDALDGLMGRVADAAGIQFRV------------LNVKKGPAVRGPRTQADRELYRLAMQR 109
                  MG +AD      RV            L+  K P +        RE     + +
Sbjct: 59  -------MG-LADEVATYHRVNRVTVFSPSRWELSFPKRPGMPDHGHTVSREHLDTVLLK 110

Query: 110 EILSQENLDVIQG-EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTF 157
              S    +V QG EVAG   +    +  +V++    +    V+   G +
Sbjct: 111 HAES-AGAEVRQGAEVAGPEFDASGRVIGVVLKGGEKVYGDAVIAADGAY 159


>gi|157156667|ref|YP_001461215.1| putative oxidoreductase FixC [Escherichia coli E24377A]
 gi|157078697|gb|ABV18405.1| protein FixC [Escherichia coli E24377A]
          Length = 428

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHAKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|331082754|ref|ZP_08331877.1| thioredoxin-disulfide reductase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400373|gb|EGG80015.1| thioredoxin-disulfide reductase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 306

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 43/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD I+IG G AG  AA  A++ G  TA++                   GK     E
Sbjct: 1   MKKEYDFIIIGAGPAGMTAAIYASRAGLKTAMLE-------------GGAPGGKLLKTNE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I    G+                        G +   D   +  +               
Sbjct: 48  ISNWPGIQSE--------------------PGSQLAFDMFEHSTSFGAVYEY-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G V      +     ++  D ++     V++ TGT
Sbjct: 80  GMVTEIIDGEKKQ--VICADGTVFEAPAVLVATGT 112


>gi|301648390|ref|ZP_07248126.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|307136646|ref|ZP_07496002.1| putative oxidoreductase FixC [Escherichia coli H736]
 gi|331640495|ref|ZP_08341643.1| protein FixC [Escherichia coli H736]
 gi|301073525|gb|EFK88331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 146-1]
 gi|315616180|gb|EFU96799.1| protein fixC [Escherichia coli 3431]
 gi|331040241|gb|EGI12448.1| protein FixC [Escherichia coli H736]
          Length = 428

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQHDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|145591568|ref|YP_001153570.1| geranylgeranyl reductase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283336|gb|ABP50918.1| geranylgeranyl reductase [Pyrobaculum arsenaticum DSM 13514]
          Length = 358

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI++G G AG  AA +A +LG  T +       +      P  GGL      + ++AL
Sbjct: 2   FDVIIVGAGPAGSTAALIAGRLGLKTLI----IDRLSPPREKPCGGGLTP-RSWKLLNAL 56

Query: 66  D------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                  G+   V   A     VL  KK P     R   D  L + +    +  Q  + V
Sbjct: 57  GVEYPVYGICKEVETRAAGYSYVL--KKEPIYVTRRPDFDYSLLKQSGAEFVKDQ-VISV 113

Query: 120 IQGEVAG 126
            Q EV G
Sbjct: 114 RQNEVVG 120


>gi|293379893|ref|ZP_06626008.1| GDP dissociation inhibitor [Lactobacillus crispatus 214-1]
 gi|290923554|gb|EFE00442.1| GDP dissociation inhibitor [Lactobacillus crispatus 214-1]
          Length = 509

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
          +   YDVIV+G G+ G  AAA +A++G  T LI  H  
Sbjct: 1  MAEKYDVIVVGAGNGGLMAAASSARMGKKTLLIERHNL 38


>gi|256842985|ref|ZP_05548473.1| conserved hypothetical protein [Lactobacillus crispatus
          125-2-CHN]
 gi|262045953|ref|ZP_06018917.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
 gi|256614405|gb|EEU19606.1| conserved hypothetical protein [Lactobacillus crispatus
          125-2-CHN]
 gi|260573912|gb|EEX30468.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US]
          Length = 509

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
          +   YDVIV+G G+ G  AAA +A++G  T LI  H  
Sbjct: 1  MAEKYDVIVVGAGNGGLMAAASSARMGKKTLLIERHNL 38


>gi|227877515|ref|ZP_03995579.1| phytoene dehydrogenase family protein [Lactobacillus crispatus
          JV-V01]
 gi|256848641|ref|ZP_05554075.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|227862886|gb|EEJ70341.1| phytoene dehydrogenase family protein [Lactobacillus crispatus
          JV-V01]
 gi|256714180|gb|EEU29167.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
          Length = 509

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
          +   YDVIV+G G+ G  AAA +A++G  T LI  H  
Sbjct: 1  MAEKYDVIVVGAGNGGLMAAASSARMGKKTLLIERHNL 38


>gi|221231538|ref|YP_002510690.1| hypothetical protein SPN23F_06650 [Streptococcus pneumoniae ATCC
           700669]
 gi|220673998|emb|CAR68511.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
          Length = 391

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSLVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|168484856|ref|ZP_02709801.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041998|gb|EDT50044.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|332203896|gb|EGJ17963.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA47368]
          Length = 391

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   DN            C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDNQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|89897042|ref|YP_520529.1| hypothetical protein DSY4296 [Desulfitobacterium hafniense Y51]
 gi|89336490|dbj|BAE86085.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 430

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 28/207 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+GGG AG  AA + AK G    L+                GG    H + 
Sbjct: 1   MSEDKFDAIVVGGGIAGTVAAYLLAKEGLEVILV----ERGNYAGSKNMTGGRIYSHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                       E       +  + D + +        K            R ++   + 
Sbjct: 57  KIMPDFAREAPVERRITREKISLMTDESNVTLD-FYSSKLGVQGSDSYSILRGVFDQWLA 115

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--------LR 159
            +   +  + +I G  V      +  +  +V      +  +  +L  G           R
Sbjct: 116 EKAE-EAGVQIIPGIRVDDLIIREGKVCGVV-AGEDELEANITILADGVNSLLAQKLGFR 173

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           G +    + + A  + + P   + + F
Sbjct: 174 GELAAHHVAVGAKEIIELPPQVIEDRF 200


>gi|254166845|ref|ZP_04873699.1| hypothetical protein ABOONEI_1937 [Aciduliprofundum boonei T469]
 gi|289596255|ref|YP_003482951.1| geranylgeranyl reductase [Aciduliprofundum boonei T469]
 gi|197624455|gb|EDY37016.1| hypothetical protein ABOONEI_1937 [Aciduliprofundum boonei T469]
 gi|289534042|gb|ADD08389.1| geranylgeranyl reductase [Aciduliprofundum boonei T469]
          Length = 395

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 13/164 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDV+VIG G  G  AA  AA+ G    LI  +      + C   I        + 
Sbjct: 1   MKRYEYDVLVIGAGPGGSMAARYAARHGLKVLLIEKRPEIGVPVRCAEGISRA----WMD 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-----RELYRLAMQREILSQE 115
           E++         A+  G +    + K    +   +   +        Y       + +QE
Sbjct: 57  EVEIEPQEKWIDAEIDGAKIYSPDEKSVIKLSAEQAGNEVGFVLNREYFDKYLASLAAQE 116

Query: 116 NLDVI-QGEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTG 155
             ++  +        E   +   +++       +R   V+   G
Sbjct: 117 GAEIWLKSPAVEIIKEDGYVRGAIVRRFGEKVEVRAKIVIGADG 160


>gi|182683661|ref|YP_001835408.1| hypothetical protein SPCG_0691 [Streptococcus pneumoniae CGSP14]
 gi|182628995|gb|ACB89943.1| hypothetical protein SPCG_0691 [Streptococcus pneumoniae CGSP14]
          Length = 397

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 8   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 63

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 64  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 121

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 122 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 175

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 176 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 223

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 224 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 276

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 277 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 334

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 335 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 388

Query: 383 LVAG 386
            VAG
Sbjct: 389 WVAG 392


>gi|148985314|ref|ZP_01818537.1| hypothetical protein CGSSp3BS71_08901 [Streptococcus pneumoniae
           SP3-BS71]
 gi|149010636|ref|ZP_01832007.1| hypothetical protein CGSSp19BS75_04757 [Streptococcus pneumoniae
           SP19-BS75]
 gi|149013220|ref|ZP_01834006.1| hypothetical protein CGSSp19BS75_06262 [Streptococcus pneumoniae
           SP19-BS75]
 gi|225860716|ref|YP_002742225.1| hypothetical protein SPT_0756 [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230041|ref|ZP_06963722.1| hypothetical protein SpneCMD_05176 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255828|ref|ZP_06979414.1| hypothetical protein SpneCM_09588 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502527|ref|YP_003724467.1| flavoprotein [Streptococcus pneumoniae TCH8431/19A]
 gi|303255843|ref|ZP_07341884.1| hypothetical protein CGSSpBS455_10139 [Streptococcus pneumoniae
           BS455]
 gi|147762971|gb|EDK69916.1| hypothetical protein CGSSp19BS75_06262 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147765117|gb|EDK72046.1| hypothetical protein CGSSp19BS75_04757 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922512|gb|EDK73631.1| hypothetical protein CGSSp3BS71_08901 [Streptococcus pneumoniae
           SP3-BS71]
 gi|225726917|gb|ACO22768.1| conserved hypothetical protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238122|gb|ADI69253.1| flavoprotein [Streptococcus pneumoniae TCH8431/19A]
 gi|301799759|emb|CBW32328.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
 gi|301801589|emb|CBW34287.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302597227|gb|EFL64332.1| hypothetical protein CGSSpBS455_10139 [Streptococcus pneumoniae
           BS455]
          Length = 391

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|253577908|ref|ZP_04855180.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850226|gb|EES78184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 396

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 135/426 (31%), Gaps = 65/426 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +   V++ G G  G  AA +AA+ GA+  ++       G   C    G     +L R  D
Sbjct: 2   KKRQVVITGAGACGLMAAIMAARNGAAVTVLEQN-EKPGKKICATGNGRCNFSNLARPDD 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A  G      + A  +F V N  +     G     +R  Y     R   +Q  +DV+  E
Sbjct: 61  AYRGEHPEFVEDALREFSVENTIEFFKEIGI-YPLNRNGY--LYPRSNQAQSVVDVLCME 117

Query: 124 VAGFNTE---KNIISSIVM----------QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            A    +      ++ I                      ++L  G+    V         
Sbjct: 118 AASLGVKIKTNEQVTEIKTGTNEKNFQILTKGWHYDADALILANGSRASSVSGSDGSGYM 177

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK--------TEKQ---FA 219
                      ++ +           K     R +G+  ++           E Q   + 
Sbjct: 178 LAESFQHRIVPVYPALTALKCKGSSFKAWAGVRTEGEISLFTDGKFCKSEHGELQLTEYG 237

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
              +  F   T  +          R   +    I    + S      +     + CP  +
Sbjct: 238 ISGIPVFQLSTYAVRA-------VREGHKAELRINFMPELSEEELKKLLYARKKACPYKK 290

Query: 280 DK---IVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           +K   +  F E+   +I +  + L + +          P E+Q           +  +  
Sbjct: 291 EKELLVGLFPEKLI-KILISQKQLVSAIRE-------FPLEVQDGM-----SFSQAQVCS 337

Query: 337 PGYAIEYDYINPKELF-PTLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAGINS 389
            G       ++  ++   T+E+K   GL+ AG+   I+GT G      A + G VAG N+
Sbjct: 338 GG-------VDTSQVNSQTMESKLCRGLYFAGELLDIDGTCGGYNLQWAWSSGAVAGKNA 390

Query: 390 ARKSNK 395
           A++   
Sbjct: 391 AKEEKN 396


>gi|207111865|ref|ZP_03246027.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 35

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ 319
           F E+  HQ+FLEP+ ++    Y NG+ST+LP ++Q
Sbjct: 1   FSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQ 35


>gi|309799997|ref|ZP_07694197.1| conserved hypothetical protein [Streptococcus infantis SK1302]
 gi|308116396|gb|EFO53872.1| conserved hypothetical protein [Streptococcus infantis SK1302]
          Length = 392

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 132/425 (31%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KYFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIV--------MQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+            +    C  +++TTG            
Sbjct: 116 ALEKKIMELGGQVATQTEIVSVKKIDDQFVLKSTDQTFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPQLS-EGDLVDFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E  + Q +++I  L+        
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTERERDQLLQSIKALKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGSN 388


>gi|21637137|gb|AAM70353.1|AF505622_25 CalO3 [Micromonospora echinospora]
          Length = 420

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGG AG   A + A+ G    L+               IG      +   +DA
Sbjct: 7   EYDVIVVGGGPAGSSTAGLLAQEGHRVLLLE--REKFPRYH----IGESLISGVTLTLDA 60

Query: 65  LD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           L     M  +         +L      A    R +  R+       +         V + 
Sbjct: 61  LGVRERMAELRFQIKHGGSLLWGADQTAPWSFRFREIRDARFDYSWQ---------VRRA 111

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           E      ++     +V+ + + +R     LT G  + GV +  +
Sbjct: 112 EFDAMLLDRARELGVVVVEGATVR---GPLTDGERVAGVSYQFR 152


>gi|168215955|ref|ZP_02641580.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens NCTC 8239]
 gi|182381571|gb|EDT79050.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens NCTC 8239]
          Length = 403

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 136/408 (33%), Gaps = 74/408 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M  +   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSKKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G    S   +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYGILEKY--GHTITSIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPF-----------SFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
            K  ++F D     F           S++T  +   ++E  +   N ++   + + I+ +
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILKLSSYITKALDQGEVELSLDFLNDKSKEELSQIIRSN 283

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
              +      G      ++      G        L+ E  N  + Y   +   + E +  
Sbjct: 284 PNKTVLNNLKGTLPQNFLKQIFEMLGLTEIKASDLKKEDENKIISYIKEMKLTVRETLTI 343

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 344 KA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|325495971|gb|EGC93830.1| oxidoreductase FixC [Escherichia fergusonii ECD227]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|323975789|gb|EGB70885.1| FAD dependent oxidoreductase [Escherichia coli TW10509]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|323964858|gb|EGB60325.1| FAD dependent oxidoreductase [Escherichia coli M863]
 gi|327255019|gb|EGE66622.1| protein fixC [Escherichia coli STEC_7v]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|320179603|gb|EFW54552.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Shigella boydii ATCC 9905]
          Length = 436

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|331661083|ref|ZP_08362015.1| protein FixC [Escherichia coli TA206]
 gi|331052125|gb|EGI24164.1| protein FixC [Escherichia coli TA206]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPSFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|300919594|ref|ZP_07136086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
 gi|300413340|gb|EFJ96650.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 115-1]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|284919824|emb|CBG32879.1| FAD-dependent oxidoreductase [Escherichia coli 042]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|260842281|ref|YP_003220059.1| putative oxidoreductase [Escherichia coli O103:H2 str. 12009]
 gi|257757428|dbj|BAI28925.1| predicted oxidoreductase [Escherichia coli O103:H2 str. 12009]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|254160168|ref|YP_003043276.1| putative oxidoreductase FixC [Escherichia coli B str. REL606]
 gi|253972069|gb|ACT37740.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli B str. REL606]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|218703304|ref|YP_002410823.1| putative oxidoreductase FixC [Escherichia coli UMN026]
 gi|293403118|ref|ZP_06647215.1| hypothetical protein ECGG_03413 [Escherichia coli FVEC1412]
 gi|298378646|ref|ZP_06988530.1| hypothetical protein ECFG_03609 [Escherichia coli FVEC1302]
 gi|300900933|ref|ZP_07119068.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|301019767|ref|ZP_07183913.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
 gi|218430401|emb|CAR11268.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli UMN026]
 gi|291430033|gb|EFF03047.1| hypothetical protein ECGG_03413 [Escherichia coli FVEC1412]
 gi|298280980|gb|EFI22481.1| hypothetical protein ECFG_03609 [Escherichia coli FVEC1302]
 gi|300355596|gb|EFJ71466.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 198-1]
 gi|300399104|gb|EFJ82642.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 69-1]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|218698463|ref|YP_002406092.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|300939457|ref|ZP_07154119.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
 gi|331645151|ref|ZP_08346262.1| protein FixC [Escherichia coli M605]
 gi|218368449|emb|CAR16185.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli IAI39]
 gi|300455678|gb|EFK19171.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 21-1]
 gi|330909893|gb|EGH38403.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli AA86]
 gi|331045908|gb|EGI18027.1| protein FixC [Escherichia coli M605]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|218547490|ref|YP_002381281.1| oxidoreductase FixC [Escherichia fergusonii ATCC 35469]
 gi|218355031|emb|CAQ87637.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           fergusonii ATCC 35469]
 gi|324112556|gb|EGC06533.1| FAD dependent oxidoreductase [Escherichia fergusonii B253]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|117622334|ref|YP_851247.1| putative oxidoreductase FixC [Escherichia coli APEC O1]
 gi|115511458|gb|ABI99532.1| flavoprotein [Escherichia coli APEC O1]
 gi|323950958|gb|EGB46835.1| FAD dependent oxidoreductase [Escherichia coli H252]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|15799726|ref|NP_285738.1| putative oxidoreductase FixC [Escherichia coli O157:H7 EDL933]
 gi|12512733|gb|AAG54346.1|AE005181_3 flavoprotein; electron transport [Escherichia coli O157:H7 str.
           EDL933]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|15829300|ref|NP_308073.1| oxidoreductase FixC [Escherichia coli O157:H7 str. Sakai]
 gi|168751699|ref|ZP_02776721.1| protein FixC [Escherichia coli O157:H7 str. EC4113]
 gi|168756871|ref|ZP_02781878.1| protein FixC [Escherichia coli O157:H7 str. EC4401]
 gi|168762807|ref|ZP_02787814.1| protein FixC [Escherichia coli O157:H7 str. EC4501]
 gi|168766735|ref|ZP_02791742.1| protein FixC [Escherichia coli O157:H7 str. EC4486]
 gi|168776963|ref|ZP_02801970.1| protein FixC [Escherichia coli O157:H7 str. EC4196]
 gi|168781744|ref|ZP_02806751.1| protein FixC [Escherichia coli O157:H7 str. EC4076]
 gi|168785098|ref|ZP_02810105.1| protein FixC [Escherichia coli O157:H7 str. EC869]
 gi|168801928|ref|ZP_02826935.1| protein FixC [Escherichia coli O157:H7 str. EC508]
 gi|195937717|ref|ZP_03083099.1| putative oxidoreductase FixC [Escherichia coli O157:H7 str. EC4024]
 gi|208807357|ref|ZP_03249694.1| protein FixC [Escherichia coli O157:H7 str. EC4206]
 gi|208811934|ref|ZP_03253263.1| protein FixC [Escherichia coli O157:H7 str. EC4045]
 gi|208819664|ref|ZP_03259984.1| protein FixC [Escherichia coli O157:H7 str. EC4042]
 gi|209399776|ref|YP_002268651.1| protein FixC [Escherichia coli O157:H7 str. EC4115]
 gi|217326207|ref|ZP_03442291.1| protein FixC [Escherichia coli O157:H7 str. TW14588]
 gi|254791180|ref|YP_003076017.1| putative oxidoreductase FixC [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226801|ref|ZP_05941082.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255204|ref|ZP_05947737.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli O157:H7 str. FRIK966]
 gi|56404561|sp|Q7AHT0|FIXC_ECO57 RecName: Full=Protein fixC
 gi|13359502|dbj|BAB33469.1| flavoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|187767729|gb|EDU31573.1| protein FixC [Escherichia coli O157:H7 str. EC4196]
 gi|188014309|gb|EDU52431.1| protein FixC [Escherichia coli O157:H7 str. EC4113]
 gi|189000675|gb|EDU69661.1| protein FixC [Escherichia coli O157:H7 str. EC4076]
 gi|189356112|gb|EDU74531.1| protein FixC [Escherichia coli O157:H7 str. EC4401]
 gi|189364063|gb|EDU82482.1| protein FixC [Escherichia coli O157:H7 str. EC4486]
 gi|189366925|gb|EDU85341.1| protein FixC [Escherichia coli O157:H7 str. EC4501]
 gi|189374712|gb|EDU93128.1| protein FixC [Escherichia coli O157:H7 str. EC869]
 gi|189376021|gb|EDU94437.1| protein FixC [Escherichia coli O157:H7 str. EC508]
 gi|208727158|gb|EDZ76759.1| protein FixC [Escherichia coli O157:H7 str. EC4206]
 gi|208733211|gb|EDZ81898.1| protein FixC [Escherichia coli O157:H7 str. EC4045]
 gi|208739787|gb|EDZ87469.1| protein FixC [Escherichia coli O157:H7 str. EC4042]
 gi|209161176|gb|ACI38609.1| protein FixC [Escherichia coli O157:H7 str. EC4115]
 gi|209746976|gb|ACI71795.1| flavoprotein [Escherichia coli]
 gi|209746978|gb|ACI71796.1| flavoprotein [Escherichia coli]
 gi|209746982|gb|ACI71798.1| flavoprotein [Escherichia coli]
 gi|217322428|gb|EEC30852.1| protein FixC [Escherichia coli O157:H7 str. TW14588]
 gi|254590580|gb|ACT69941.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli O157:H7 str. TW14359]
 gi|320190436|gb|EFW65086.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli O157:H7 str. EC1212]
 gi|326345239|gb|EGD68982.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli O157:H7 str. 1125]
 gi|326346908|gb|EGD70642.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli O157:H7 str. 1044]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|193070985|ref|ZP_03051914.1| protein FixC [Escherichia coli E110019]
 gi|192955715|gb|EDV86189.1| protein FixC [Escherichia coli E110019]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|74310663|ref|YP_309082.1| putative oxidoreductase FixC [Shigella sonnei Ss046]
 gi|188493194|ref|ZP_03000464.1| protein FixC [Escherichia coli 53638]
 gi|291280867|ref|YP_003497685.1| PAPS (adenosine 3-phosphate 5-phosphosulfate) 3(2),5-bisphosphate
           nucleotidase [Escherichia coli O55:H7 str. CB9615]
 gi|293408137|ref|ZP_06651977.1| hypothetical protein ECEG_03069 [Escherichia coli B354]
 gi|293417919|ref|ZP_06660541.1| electron transfer flavoprotein-quinone oxidoreductase [Escherichia
           coli B185]
 gi|331661412|ref|ZP_08362336.1| protein FixC [Escherichia coli TA143]
 gi|73854140|gb|AAZ86847.1| flavoprotein [Shigella sonnei Ss046]
 gi|188488393|gb|EDU63496.1| protein FixC [Escherichia coli 53638]
 gi|209746974|gb|ACI71794.1| flavoprotein [Escherichia coli]
 gi|209746980|gb|ACI71797.1| flavoprotein [Escherichia coli]
 gi|290760740|gb|ADD54701.1| PAPS (adenosine 3-phosphate 5-phosphosulfate) 3(2),5-bisphosphate
           nucleotidase [Escherichia coli O55:H7 str. CB9615]
 gi|291430637|gb|EFF03635.1| electron transfer flavoprotein-quinone oxidoreductase [Escherichia
           coli B185]
 gi|291472388|gb|EFF14870.1| hypothetical protein ECEG_03069 [Escherichia coli B354]
 gi|320642083|gb|EFX11434.1| putative oxidoreductase FixC [Escherichia coli O157:H7 str. G5101]
 gi|320647446|gb|EFX16241.1| putative oxidoreductase FixC [Escherichia coli O157:H- str. 493-89]
 gi|320652780|gb|EFX21018.1| putative oxidoreductase FixC [Escherichia coli O157:H- str. H 2687]
 gi|320658169|gb|EFX25898.1| putative oxidoreductase FixC [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663478|gb|EFX30762.1| putative oxidoreductase FixC [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668790|gb|EFX35585.1| putative oxidoreductase FixC [Escherichia coli O157:H7 str. LSU-61]
 gi|323166094|gb|EFZ51873.1| protein fixC [Shigella sonnei 53G]
 gi|323181740|gb|EFZ67153.1| protein fixC [Escherichia coli 1357]
 gi|324118395|gb|EGC12289.1| FAD dependent oxidoreductase [Escherichia coli E1167]
 gi|331061327|gb|EGI33290.1| protein FixC [Escherichia coli TA143]
 gi|332341375|gb|AEE54709.1| oxidoreductase FixC [Escherichia coli UMNK88]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|16128037|ref|NP_414585.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26245966|ref|NP_752005.1| putative oxidoreductase FixC [Escherichia coli CFT073]
 gi|89106927|ref|AP_000707.1| predicted oxidoreductase, FAD/NAD(P)-binding domain [Escherichia
           coli str. K-12 substr. W3110]
 gi|91209104|ref|YP_539090.1| putative oxidoreductase FixC [Escherichia coli UTI89]
 gi|110640256|ref|YP_667984.1| putative oxidoreductase FixC [Escherichia coli 536]
 gi|157159514|ref|YP_001456832.1| putative oxidoreductase FixC [Escherichia coli HS]
 gi|170021599|ref|YP_001726553.1| putative oxidoreductase FixC [Escherichia coli ATCC 8739]
 gi|170079706|ref|YP_001729026.1| oxidoreductase [Escherichia coli str. K-12 substr. DH10B]
 gi|191169147|ref|ZP_03030906.1| protein FixC [Escherichia coli B7A]
 gi|191174101|ref|ZP_03035615.1| protein FixC [Escherichia coli F11]
 gi|193066227|ref|ZP_03047280.1| protein FixC [Escherichia coli E22]
 gi|194429868|ref|ZP_03062380.1| protein FixC [Escherichia coli B171]
 gi|194439702|ref|ZP_03071772.1| protein FixC [Escherichia coli 101-1]
 gi|209917235|ref|YP_002291319.1| putative oxidoreductase FixC [Escherichia coli SE11]
 gi|215485205|ref|YP_002327636.1| putative oxidoreductase FixC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218552628|ref|YP_002385541.1| putative oxidoreductase FixC [Escherichia coli IAI1]
 gi|218556983|ref|YP_002389896.1| oxidoreductase FixC [Escherichia coli S88]
 gi|218687919|ref|YP_002396131.1| putative oxidoreductase FixC [Escherichia coli ED1a]
 gi|227885058|ref|ZP_04002863.1| oxidoreductase FixC [Escherichia coli 83972]
 gi|237704187|ref|ZP_04534668.1| fixC [Escherichia sp. 3_2_53FAA]
 gi|238899448|ref|YP_002925244.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli BW2952]
 gi|253774925|ref|YP_003037756.1| oxidoreductase FixC [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037460|ref|ZP_04871537.1| FixC [Escherichia sp. 1_1_43]
 gi|260853254|ref|YP_003227145.1| putative oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|260866194|ref|YP_003232596.1| putative oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|293476707|ref|ZP_06665115.1| fixC [Escherichia coli B088]
 gi|300816079|ref|ZP_07096302.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300821952|ref|ZP_07102096.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300905446|ref|ZP_07123213.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|300924008|ref|ZP_07140008.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300928658|ref|ZP_07144177.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|300948647|ref|ZP_07162731.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|300956973|ref|ZP_07169225.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300981017|ref|ZP_07175294.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|301024788|ref|ZP_07188426.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
 gi|301048427|ref|ZP_07195454.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|301305065|ref|ZP_07211166.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|301330186|ref|ZP_07222848.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|306815359|ref|ZP_07449508.1| putative oxidoreductase FixC [Escherichia coli NC101]
 gi|312966163|ref|ZP_07780389.1| protein fixC [Escherichia coli 2362-75]
 gi|312970137|ref|ZP_07784319.1| protein fixC [Escherichia coli 1827-70]
 gi|331650937|ref|ZP_08351965.1| protein FixC [Escherichia coli M718]
 gi|331666279|ref|ZP_08367160.1| protein FixC [Escherichia coli TA271]
 gi|331680616|ref|ZP_08381275.1| protein FixC [Escherichia coli H591]
 gi|56405035|sp|P68644|FIXC_ECOLI RecName: Full=Protein fixC
 gi|56405036|sp|P68645|FIXC_ECOL6 RecName: Full=Protein fixC
 gi|26106363|gb|AAN78549.1|AE016755_49 FixC protein [Escherichia coli CFT073]
 gi|1786227|gb|AAC73154.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674298|dbj|BAB96611.2| predicted oxidoreductase, FAD/NAD(P)-binding domain [Escherichia
           coli str. K12 substr. W3110]
 gi|91070678|gb|ABE05559.1| FixC protein [Escherichia coli UTI89]
 gi|110341848|gb|ABG68085.1| probable electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli 536]
 gi|157065194|gb|ABV04449.1| protein FixC [Escherichia coli HS]
 gi|169756527|gb|ACA79226.1| FAD dependent oxidoreductase [Escherichia coli ATCC 8739]
 gi|169887541|gb|ACB01248.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. DH10B]
 gi|190900822|gb|EDV60612.1| protein FixC [Escherichia coli B7A]
 gi|190905595|gb|EDV65220.1| protein FixC [Escherichia coli F11]
 gi|192926152|gb|EDV80793.1| protein FixC [Escherichia coli E22]
 gi|194412087|gb|EDX28397.1| protein FixC [Escherichia coli B171]
 gi|194421387|gb|EDX37404.1| protein FixC [Escherichia coli 101-1]
 gi|209910494|dbj|BAG75568.1| flavoprotein FixC [Escherichia coli SE11]
 gi|215263277|emb|CAS07592.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218359396|emb|CAQ96935.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli IAI1]
 gi|218363752|emb|CAR01412.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli S88]
 gi|218425483|emb|CAR06265.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli ED1a]
 gi|222031875|emb|CAP74613.1| Protein fixC [Escherichia coli LF82]
 gi|226840566|gb|EEH72568.1| FixC [Escherichia sp. 1_1_43]
 gi|226902099|gb|EEH88358.1| fixC [Escherichia sp. 3_2_53FAA]
 gi|227837887|gb|EEJ48353.1| oxidoreductase FixC [Escherichia coli 83972]
 gi|238862751|gb|ACR64749.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli BW2952]
 gi|242375882|emb|CAQ30563.1| flavoprotein (electron transport), possibly involved in anaerobic
           carnitine metabolism [Escherichia coli BL21(DE3)]
 gi|253325969|gb|ACT30571.1| FAD dependent oxidoreductase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253976278|gb|ACT41948.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli BL21(DE3)]
 gi|257751903|dbj|BAI23405.1| predicted oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|257762550|dbj|BAI34045.1| predicted oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|260450748|gb|ACX41170.1| FAD dependent oxidoreductase [Escherichia coli DH1]
 gi|281177258|dbj|BAI53588.1| flavoprotein FixC [Escherichia coli SE15]
 gi|291321160|gb|EFE60602.1| fixC [Escherichia coli B088]
 gi|294491639|gb|ADE90395.1| protein FixC [Escherichia coli IHE3034]
 gi|299880278|gb|EFI88489.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 196-1]
 gi|300299720|gb|EFJ56105.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 185-1]
 gi|300316263|gb|EFJ66047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 175-1]
 gi|300402724|gb|EFJ86262.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 84-1]
 gi|300409053|gb|EFJ92591.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 45-1]
 gi|300419732|gb|EFK03043.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 182-1]
 gi|300451873|gb|EFK15493.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 116-1]
 gi|300463327|gb|EFK26820.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 187-1]
 gi|300525552|gb|EFK46621.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 119-7]
 gi|300531286|gb|EFK52348.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 107-1]
 gi|300839672|gb|EFK67432.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 124-1]
 gi|300843826|gb|EFK71586.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 78-1]
 gi|305851021|gb|EFM51476.1| putative oxidoreductase FixC [Escherichia coli NC101]
 gi|307551888|gb|ADN44663.1| probable electron transfer flavoprotein-quinone oxidoreductase
           [Escherichia coli ABU 83972]
 gi|307629616|gb|ADN73920.1| putative oxidoreductase FixC [Escherichia coli UM146]
 gi|309700256|emb|CBI99544.1| FAD-dependent oxidoreductase [Escherichia coli ETEC H10407]
 gi|310337635|gb|EFQ02746.1| protein fixC [Escherichia coli 1827-70]
 gi|312289406|gb|EFR17300.1| protein fixC [Escherichia coli 2362-75]
 gi|312944649|gb|ADR25476.1| putative oxidoreductase FixC [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315134739|dbj|BAJ41898.1| putative oxidoreductase FixC [Escherichia coli DH1]
 gi|315255681|gb|EFU35649.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 85-1]
 gi|315285130|gb|EFU44575.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 110-3]
 gi|320197512|gb|EFW72126.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli WV_060327]
 gi|320200439|gb|EFW75025.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli EC4100B]
 gi|323157897|gb|EFZ44000.1| protein fixC [Escherichia coli EPECa14]
 gi|323160085|gb|EFZ46047.1| protein fixC [Escherichia coli E128010]
 gi|323171465|gb|EFZ57112.1| protein fixC [Escherichia coli LT-68]
 gi|323176350|gb|EFZ61942.1| protein fixC [Escherichia coli 1180]
 gi|323935096|gb|EGB31463.1| FAD dependent oxidoreductase [Escherichia coli E1520]
 gi|323939735|gb|EGB35937.1| FAD dependent oxidoreductase [Escherichia coli E482]
 gi|323945780|gb|EGB41827.1| FAD dependent oxidoreductase [Escherichia coli H120]
 gi|323955240|gb|EGB51013.1| FAD dependent oxidoreductase [Escherichia coli H263]
 gi|323959992|gb|EGB55638.1| FAD dependent oxidoreductase [Escherichia coli H489]
 gi|323970717|gb|EGB65971.1| FAD dependent oxidoreductase [Escherichia coli TA007]
 gi|324008389|gb|EGB77608.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 57-2]
 gi|324012299|gb|EGB81518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 60-1]
 gi|324017688|gb|EGB86907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 117-3]
 gi|331051391|gb|EGI23440.1| protein FixC [Escherichia coli M718]
 gi|331066490|gb|EGI38367.1| protein FixC [Escherichia coli TA271]
 gi|331072079|gb|EGI43415.1| protein FixC [Escherichia coli H591]
          Length = 428

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|71005306|ref|XP_757319.1| hypothetical protein UM01172.1 [Ustilago maydis 521]
 gi|46096723|gb|EAK81956.1| hypothetical protein UM01172.1 [Ustilago maydis 521]
          Length = 654

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 79/252 (31%), Gaps = 55/252 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGL-- 53
           +I+  YD IV+G G +G  AA   A+ G +TA IT     ++ T+ +    N A+G +  
Sbjct: 62  VIDHEYDAIVVGAGGSGLRAAFGLAEAGLNTACITKLFPTRSHTVAAQGGINAALGNMTE 121

Query: 54  ----------GKG------------------HLVREIDALDGLMGRVAD----AAGIQFR 81
                      KG                    V E++       R  D          +
Sbjct: 122 DDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRTVIELEHFGLPFSRTKDGKIYQRAFGGQ 181

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENL-DVIQGEVAGFNTEKNIISSI 137
            LN  KG         ADR  +  AM   +  Q    N    I+        E      +
Sbjct: 182 SLNYGKGGQAYRCAAAADRTGH--AMLHTLYGQSLRHNTNFFIEYFALDLIMEDGECVGV 239

Query: 138 V---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF- 191
               M+D ++   R    VL TG + R            G  G +  +         +F 
Sbjct: 240 TALNMEDGTIHRFRAHKTVLATGGYGRAYFSATSAHTCTG-DGMAMVSRAGLPLQDLEFV 298

Query: 192 ---DTGRLKTGT 200
               TG    G 
Sbjct: 299 QFHPTGIYGAGC 310


>gi|222100089|ref|YP_002534657.1| FAD dependent oxidoreductase precursor [Thermotoga neapolitana DSM
           4359]
 gi|221572479|gb|ACM23291.1| FAD dependent oxidoreductase precursor [Thermotoga neapolitana DSM
           4359]
          Length = 438

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           +   +DV+V+G G +G   A V A+ G   A                 L  H    +   
Sbjct: 1   MKIEFDVVVVGAGPSGLSCAYVLARNGLKVAVVEKGEYPGSKNVMGGVLYVHPLKELMPD 60

Query: 45  SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
                 G       V E +    ++G+          V   +K  A    R   DR    
Sbjct: 61  FLEKVSGSKALERNVIEQNLW--VLGKEGVVKIGHRNVEWKEKPNAFTVLRANFDR---- 114

Query: 105 LAMQREILSQENLDVIQGEVAGFNT-EKNIISSIVMQD-NSMIRCSTVVLTTG 155
               +E+     L + + +V  F   EK  I+ +V       I    VV+  G
Sbjct: 115 -WFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPRGEIHSRAVVIAEG 166


>gi|157147539|ref|YP_001454858.1| putative oxidoreductase FixC [Citrobacter koseri ATCC BAA-895]
 gi|157084744|gb|ABV14422.1| hypothetical protein CKO_03339 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRIYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + +   +    +N +     +      R++ D     
Sbjct: 57  RIIPGFAEHAPVERVITHEKLAFMTEKGAMAVDYVNGEDAAPSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|309796028|ref|ZP_07690440.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
 gi|308120270|gb|EFO57532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Escherichia coli MS 145-7]
          Length = 428

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRG---PRTQADRELYR 104
                       E       +  + + + +     N  +  P++R     R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSLRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|288799702|ref|ZP_06405161.1| alkyl hydroperoxide reductase, F subunit [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332950|gb|EFC71429.1| alkyl hydroperoxide reductase, F subunit [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 520

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 42/218 (19%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            ++YDVIV+GGG AG  AA  +A+ G   A+I              +IGG  K  +  E 
Sbjct: 212 EQNYDVIVLGGGPAGSSAAIYSARKGLKVAIIA------------ESIGGQVKETVGIE- 258

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                                N+   P   G +  +D + +             +DV + 
Sbjct: 259 ---------------------NLISVPQTTGAKLASDLKEHVR--------TYPIDVFEN 289

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
                 + K+    I+++         V++ TG   R +   G+       +   P    
Sbjct: 290 RKIENVSLKDAQKRIIVRGGETFVAPAVIIATGASWRKLNVEGESDYLGKGVHFCPHCDG 349

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
                K     G   +G  A +D   I  + T  +FAD
Sbjct: 350 PFYKDKAVAVIGGGNSGIEAAIDLANICSNVTVLEFAD 387


>gi|225386596|ref|ZP_03756360.1| hypothetical protein CLOSTASPAR_00343 [Clostridium asparagiforme
           DSM 15981]
 gi|225047294|gb|EEG57540.1| hypothetical protein CLOSTASPAR_00343 [Clostridium asparagiforme
           DSM 15981]
          Length = 464

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGH 57
           ++   YD+IVIG G  G EAA  AAK G  TALI  +    G+     C P    L    
Sbjct: 7   IMADRYDLIVIGAGPGGYEAAIEAAKSGMKTALIE-RRELGGTCLNRGCIPTKTLLHTAE 65

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           L RE+      +G  A+        L  +K   V   R               ++    +
Sbjct: 66  LYREVRGA-STIGLEAENLRCNMAQLQARKNAVVEQLRGGI----------ASLMKANKV 114

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            VIQG  +    +   +   +  + + +    +++ TG+
Sbjct: 115 TVIQGSAS--IVDSGRVR--IEPEGTELETEHILIATGS 149


>gi|89894373|ref|YP_517860.1| hypothetical protein DSY1627 [Desulfitobacterium hafniense Y51]
 gi|219668799|ref|YP_002459234.1| electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
 gi|89333821|dbj|BAE83416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539059|gb|ACL20798.1| Electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
          Length = 430

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 26/170 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI- 62
             +DVIV+GGG AG  AA  AA+ G  TA+                +GG+       E+ 
Sbjct: 2   EKFDVIVVGGGPAGLSAAISAAQAGMKTAV----IERGDYPGTKNVMGGVLYTEATNEVV 57

Query: 63  ------DALDGLMGRVADAAGIQFRVLNVKKGPAVRG---------PRTQADRELYRLAM 107
                   L+  +     A   +  +L+        G          R + DR L   A+
Sbjct: 58  PDFWKEAPLERPVIEQRYAFLSKDEILSAGYRDPAWGQPPYNAHTVLRVKFDRWLADQAV 117

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTGT 156
           +  +     + + +  V       + +  +   +    +    V+L  G 
Sbjct: 118 KAGV-----MIITETLVEDLLYHGDDVVGVRTGRAEGDLGAQVVILAEGA 162


>gi|15789680|ref|NP_279504.1| hypothetical protein VNG0439C [Halobacterium sp. NRC-1]
 gi|169235394|ref|YP_001688594.1| geranylgeranyl hydrogenase-like protein [Halobacterium salinarum
           R1]
 gi|10580048|gb|AAG18984.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726460|emb|CAP13245.1| geranylgeranyl hydrogenase homolog [Halobacterium salinarum R1]
          Length = 456

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 20/170 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLG----- 54
           M    YDV+V+G G AGC AAA  A  G    ++  K+ S  G ++C  A+ G       
Sbjct: 1   MPAHEYDVVVVGAGTAGCYAAATVADAGYDVVVVERKSASEAGHIACGDALKGADNFPDV 60

Query: 55  --KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
             K  L           GR       +  VLN+     V G     DR  Y   +     
Sbjct: 61  IPKSQLEPAFTNTGVDHGRF--EIPREDTVLNIP----VPGELAVIDRREYGRCVIDGAE 114

Query: 113 SQENLDVIQGEVAG--FNTEKNIISSI---VMQDNSMIRCSTVVLTTGTF 157
               +      V       +   ++ +               V+   G+ 
Sbjct: 115 RT-GVTFSYDTVVESVIQDDDGRVTGVTGIRDGRGHEFTGDIVIDAAGSL 163


>gi|218693515|ref|YP_002401182.1| putative oxidoreductase FixC [Escherichia coli 55989]
 gi|218350247|emb|CAU95930.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli 55989]
          Length = 428

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 51/175 (29%), Gaps = 34/175 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++G G AG  AA V A+ GA                    L  H    I  
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADR 100
               P        +  +  E  A       +  D        L+ +        R++ D 
Sbjct: 59  ---IPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSLSQRS---YSVLRSKFD- 111

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                 M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 112 ---AWLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|331681428|ref|ZP_08382065.1| protein FixC [Escherichia coli H299]
 gi|331081649|gb|EGI52810.1| protein FixC [Escherichia coli H299]
          Length = 428

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLIAHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|147676713|ref|YP_001210928.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
 gi|146272810|dbj|BAF58559.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
          Length = 401

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-------NPAIGGLGKGH 57
           +YDVIVIGGG AGC+ A + A  G    +          + C            G+  G 
Sbjct: 2   NYDVIVIGGGPAGCKTAGLIAGKGYRVLVAEEHPRIGTPVQCAGLVSPRTLKAAGMPDGV 61

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           ++ EI       G    + G +   +  K   A    R   DR+L   A          L
Sbjct: 62  IINEIK------GVYVHSPGGETLAVRCKDAAAFVIDRAGFDRKLAERAQSAGAEI---L 112

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             ++  +     EK I+     +  S  R   V+   G   R
Sbjct: 113 TGVKAGLGKLLAEKIIVKLKSSRGESSARARLVIGADGANSR 154


>gi|329769994|ref|ZP_08261390.1| hypothetical protein HMPREF0433_01154 [Gemella sanguinis M325]
 gi|328837512|gb|EGF87140.1| hypothetical protein HMPREF0433_01154 [Gemella sanguinis M325]
          Length = 380

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 120/391 (30%), Gaps = 70/391 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG G AG   A      G    ++               + G G+ +++   +A
Sbjct: 2   KYDVIVIGLGSAGLMIADRLNDSGLKVLVLEQNR----RAGVKLLLTGNGRCNVMSSDNA 57

Query: 65  LDGLMG-RVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQ-REILSQENLD--- 118
            D +            +   NVKK       +  Q +R LY  + + R++++   +D   
Sbjct: 58  EDFVAAVHNGRFLRSAYHKYNVKKFFDKHNLKLKQENRRLYPASEKARDVVNTFKIDHAK 117

Query: 119 -VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
              + +V     E + +  +   +        +V+  G              P       
Sbjct: 118 IKYKEKVEDLIFEDDKLVGVKT-NVDTYLGKNIVVCAG----------GKTYP----QSG 162

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
              SL     K      ++     A +            Q              ++ +++
Sbjct: 163 SDGSLHRILKKHGVKLTKIYPSEVALIFDDFTELSGVALQ------------NVRMFHKK 210

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE- 296
                   N  T  ++  +   S   S  +  +  R+          + E N  ++F + 
Sbjct: 211 --------NERTGDLLFTHKGLSGPLSISMGEFVARFPEDKFYLDF-YPELNEEKLFEKL 261

Query: 297 -PEGLNTDVVYPNGISTAL-----PEEIQHQFIRTIPGLEKVNIIRP---GYA---IEYD 344
             +        P      +     PE +  + +R         I R    G     +EY 
Sbjct: 262 WQDNKYLHGKLPKSFYNFMLDKYFPENVSKKELRKFV----AKIKRYELVGVKTMPLEYA 317

Query: 345 Y-----INPKELFP-TLETKKISGLFLAGQI 369
           +     ++ K + P T   KKI  L+ AG+I
Sbjct: 318 FTTAGGVDLKGVSPKTCCHKKIDNLYFAGEI 348


>gi|116623911|ref|YP_826067.1| hypothetical protein Acid_4823 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227073|gb|ABJ85782.1| HI0933 family protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 386

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 126/410 (30%), Gaps = 57/410 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IG G AG   A  A K G    L+         +     I G G+ +        +
Sbjct: 7   DVVIIGAGAAGLMCAIEAGKRGRRVVLVEQNR----QIGRKILISGGGRCNFTNLHTTAE 62

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPR---TQADRELYRLAMQREILSQENLDVIQGE 123
             + R        F     K   A  GPR      +R  +R+A   + L Q   D    E
Sbjct: 63  NFLSR-----NPHF----AKSALARYGPRDFIALVER--HRIAYHEKTLGQLFCDGSAAE 111

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS---PSN 180
           +     ++   + + ++ +  ++         T + G +    L I  G +       + 
Sbjct: 112 IVAMLEQECAAAGVRIETDCSVKSIRAAFELETSI-GDLSCQALVIATGGLSIPKIGATP 170

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
             +    +F  +    +        G+    ++  +       +           + +  
Sbjct: 171 FGYEVARQFGINVVECRPALVPLTFGRQ-DRERFAELSGVSTEVTVQANGAAFREKLLF- 228

Query: 241 GITRTNLETHRIIMENIKHSA--------IYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
             T   L    I+  +             +   D           +   + RF  +    
Sbjct: 229 --THRGLSGPAILQASSYWKPGEPVQIDLLPGIDPAPDFRGSRAEVRTIVGRFLPKRLAD 286

Query: 293 IFLEPEGLNTD-----VVYPNGISTALPEEIQHQFIRT-IPGLEKVNIIRPGYAIEYDYI 346
            + E +G++             I   L      Q +     G EK  +   G       +
Sbjct: 287 RWCEVQGMDRPAPGLAEKEIQAICDGL---HGWQVLPAGTEGYEKAEVTAGG-------V 336

Query: 347 NPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINS 389
           +  EL   TLE +K+ GL+  G++   TG+        A A G+ AG  +
Sbjct: 337 DTAELSSKTLECRKVPGLYFIGEVVDVTGHLGGFNFQWAWASGVAAGQAA 386


>gi|325294528|ref|YP_004281042.1| L-aspartate oxidase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064976|gb|ADY72983.1| L-aspartate oxidase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 519

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 35/203 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS------------------- 43
           ++ YD IV+G G AG   A   + LG    ++T   + +GS                   
Sbjct: 14  HKEYDAIVVGSGAAGLFCATKLSSLGLKVCVLTKDAADVGSTKLAQGGIAAALSKEDSPD 73

Query: 44  MSCNPAI---GGLGKGHLVREIDALDGLMGRVAD--AAGIQFRV-----LNVKKGPAVRG 93
           +  N  +    GL K  + R +      + RV D    G  F       L   K  A   
Sbjct: 74  LHFNDTLKAGAGLVKTKMARILTEEG--VKRVIDLIRMGANFETNEKGLLKFTKEAAHSV 131

Query: 94  PRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIV-MQDNSM--IRCST 149
            R    ++     ++R +L     D+I+  EV     + N    ++  +D  +  I    
Sbjct: 132 ARIVYYKDKTGEEVERALLDSYRGDIIEFAEVKELIVKNNRCYGVIYEKDGKINAIYAPV 191

Query: 150 VVLTTGTFLRGVIHIGKLKIPAG 172
             + TG      +         G
Sbjct: 192 TAIATGGAAGIYLKNTNPPTSTG 214


>gi|83593600|ref|YP_427352.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Rhodospirillum rubrum ATCC 11170]
 gi|34148033|gb|AAQ62578.1| FixC [Rhodospirillum rubrum]
 gi|83576514|gb|ABC23065.1| Electron transfer flavoprotein-ubiquinone oxidoreductase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 433

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 23/170 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   +DVI++G G AG  A+   AK G +      +             G +   + V  
Sbjct: 1   MAEHFDVIIVGAGMAGNAASYTLAKAGLNVL----QIERGEYPGSKNVQGAILYANAVEQ 56

Query: 61  -----------EIDALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                      E   ++  M  + D +  G  FR  N  +    +  R    R  +    
Sbjct: 57  IIPGFRDDAPLERHVIEQRMWMLDDRSYVGSHFRSENFNE---EKPNRYTIIRAQFDKWF 113

Query: 108 QREILSQENLDVIQGEVAGFNTEK-NIISSIVM-QDNSMIRCSTVVLTTG 155
            R+      + + +  V          +  +   ++   +    V+L  G
Sbjct: 114 NRQARDAGAMVICETTVLDLIRNDAGKVVGVRCDREGGEVYAEVVILCDG 163


>gi|14486355|gb|AAK61371.1| GidA [Vibrio cholerae O395]
 gi|28912525|gb|AAO53342.1| GidA [Vibrio cholerae]
          Length = 25

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVA 24
          + + ++DVIV+GGGHAG EAA  A
Sbjct: 2  LYHETFDVIVVGGGHAGTEAALAA 25


>gi|270292323|ref|ZP_06198534.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           M143]
 gi|270278302|gb|EFA24148.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
           M143]
          Length = 393

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 141/425 (33%), Gaps = 78/425 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG +G  A   ++  G  T L+         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPSGMMATISSSFYGQKTLLVEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKIAELGGQIATQTEIVSVKKIDDQFVLKSADQTFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTVTELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK-IVRFG 286
           +     T+  +      +     R+    +K   + S D+        P + D  ++ F 
Sbjct: 218 YGKHVFTHDLLFTHFGLSGPAALRL-SSFVKGGEVISLDVL-------PQLSDSYLMTFL 269

Query: 287 ERNGHQIFLE------PEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN----- 333
           E N  +          PE L   +V  YP+ +   L E+ + Q +++I  L+        
Sbjct: 270 EENREKSLKNALKTLLPERLAEFLVQGYPDKVK-QLTEKEREQLLQSIKALKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K +SGL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVSGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAGIN 388
           VAG N
Sbjct: 384 VAGSN 388


>gi|147919190|ref|YP_687075.1| FAD-dependent oxidoreductase [uncultured methanogenic archaeon
           RC-I]
 gi|110622471|emb|CAJ37749.1| predicted FAD-dependent oxidoreductase [uncultured methanogenic
           archaeon RC-I]
          Length = 394

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVREI 62
            YDVIV+G G AG  AA  AA  GA T L+         ++C   I      +  L    
Sbjct: 2   DYDVIVVGAGPAGSMAAKYAALNGAKTLLLEEHGQVGSPVACTGLISRNALDECELGEGS 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                + G    +      +L+ K+  A    R   DRE+ R A+           +I  
Sbjct: 62  FINKRIRGAFVHSPNNHNILLDGKRTMAYVVERKIMDREMARRAVNAGAE-----ILIST 116

Query: 123 EVAGF-NTEKNIISSIVMQDNSM-IRCSTVVLTTG 155
           +  G       I   +   D +  I  S V+   G
Sbjct: 117 KAEGITPVPGGISVKVTGPDGTEDITASVVIGADG 151


>gi|207109354|ref|ZP_03243516.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 72

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 486 KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAY 545
             L    I+ K DG +      L+   F+I+ + S        +  V+E+++IE  Y  Y
Sbjct: 6   NELDENPINDKVDGIS-----LLARDSFNIEKMRSFFSFLDPLNERVLEQIKIECKYNIY 60

Query: 546 TGRQMIEAKEI 556
             +Q     ++
Sbjct: 61  IEKQHENIAKM 71


>gi|110835291|ref|YP_694150.1| Alkyl hydroperoxide reductase subunit F [Alcanivorax borkumensis
           SK2]
 gi|110648402|emb|CAL17878.1| Alkyl hydroperoxide reductase subunit F [Alcanivorax borkumensis
           SK2]
          Length = 538

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 119/373 (31%), Gaps = 86/373 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AG  AA  +A+ G    LI      IG             G +   +D  +
Sbjct: 217 DVTVIGGGPAGVSAAIYSARKGLKVTLIA---DRIG-------------GQVKDTMDIEN 260

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            +  +                GP       QA    Y + ++      E+L V +     
Sbjct: 261 LISVK-------------KTTGP-ELSGALQAHMSEYDVTVK------EHLRVAR----- 295

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSNS 181
              EK  I ++V+     I   T+++ TG   R     G        +      D P   
Sbjct: 296 --VEKGDIKTVVLSSGEAIDTKTIIVATGAKWRELGVPGEKENIGNGVAYCPHCDGPFFK 353

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +  +    ++G       A +     +++   +  AD+ L+      DK   +     
Sbjct: 354 GKDVAVIGGGNSGIEAALDLAGIVKSVNVFEFMPELKADKVLV------DKAEAKANIT- 406

Query: 242 ITRTNLETHRIIMEN---------------IKHSAIYSGDIKSYGPRYCPSIEDKIV--- 283
               N+ T++I+  N               +    ++   ++  G        + +V   
Sbjct: 407 -IHRNVATNQIMASNGKVDAIEYIDRDTEQLHRLPLHGVFVQ-IGLVPNSDFLEGVVERS 464

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
           RFGE        E    + + +Y  G  T +P     Q + ++    K ++     A EY
Sbjct: 465 RFGEIE----INEKCQTSQEGIYAAGDVTTVPY---KQIVISMGEGSKASLA----AFEY 513

Query: 344 DYINPKELFPTLE 356
                  L    E
Sbjct: 514 LLTQSDRLDALYE 526


>gi|307311503|ref|ZP_07591145.1| FAD dependent oxidoreductase [Escherichia coli W]
 gi|306908482|gb|EFN38980.1| FAD dependent oxidoreductase [Escherichia coli W]
 gi|315059269|gb|ADT73596.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli W]
 gi|323380174|gb|ADX52442.1| FAD dependent oxidoreductase [Escherichia coli KO11]
          Length = 428

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNITGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|251799430|ref|YP_003014161.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Paenibacillus sp. JDR-2]
 gi|247547056|gb|ACT04075.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Paenibacillus sp. JDR-2]
          Length = 539

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 33/177 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG--------HL 58
           DV+VIGGG AG  AA  AA  GA   L     +  G    + A    G G         L
Sbjct: 15  DVLVIGGGPAGTWAAITAASQGAKVIL-----ADKGYCGSSGATAPSGTGVWYVKPEDRL 69

Query: 59  VREIDA----LDG------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----LY 103
             E  A    + G       M RV D        L     P  +    +  +       Y
Sbjct: 70  REEAKASRYEMGGRLAEHRWMDRVLDRTYENMNRLGHAGYPFPKDDDGELHKRGLQGPEY 129

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNII---SSIVMQDN--SMIRCSTVVLTTG 155
              M++ +       +          +++ +   S +  Q      +    VV+ TG
Sbjct: 130 MRLMRKLVKKAGVKILDHSPALELLVDEHGVGGASGVQTQTGDAWTVHAGAVVIATG 186


>gi|259417748|ref|ZP_05741667.1| hypothetical protein SCH4B_3417 [Silicibacter sp. TrichCH4B]
 gi|259346654|gb|EEW58468.1| hypothetical protein SCH4B_3417 [Silicibacter sp. TrichCH4B]
          Length = 398

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHL 58
          + +D +VIGGG AG  AA   A+LG    L+  K S      +   S            L
Sbjct: 2  QDWDAVVIGGGPAGLMAAGEIARLGHRVLLVEAKPSPARKFLMAGKSGLNLTKDEPCEAL 61

Query: 59 V---REIDALDGLMGRVADAAGIQ 79
          +   RE     G M R  DAA +Q
Sbjct: 62 LAHYREAAEWLGPMIRAFDAAAVQ 85


>gi|313892561|ref|ZP_07826148.1| flavoprotein family protein [Dialister microaerophilus UPII 345-E]
 gi|329121294|ref|ZP_08249921.1| pyridine nucleotide-disulfide oxidoreductase [Dialister
           micraerophilus DSM 19965]
 gi|313118958|gb|EFR42163.1| flavoprotein family protein [Dialister microaerophilus UPII 345-E]
 gi|327470228|gb|EGF15691.1| pyridine nucleotide-disulfide oxidoreductase [Dialister
           micraerophilus DSM 19965]
          Length = 417

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + +  V VIG G AG  A+ + A+ GA+  L   K   IG       I G G+ ++  
Sbjct: 1   MNSTNKKVAVIGAGVAGMLASLICAEQGANVLLFE-KMDRIGL---KMGITGKGRCNITN 56

Query: 61  --------EIDALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPR----TQADRELY 103
                   E    +G     A        +L++      K    RG R    TQ+ + + 
Sbjct: 57  IRPIMEFIEKTPGNGKFLYSAYRKFSNVNLLDMLHEWGLKTVTERGGRVFPETQSAQTVR 116

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              M++      NL + +  V     +   +S +  +   +     V++ TG
Sbjct: 117 HFFMRKLDEMHVNLYLKEPAV-RIFVKDGAVSKVFTEKG-VYDVDAVIVCTG 166


>gi|87308365|ref|ZP_01090506.1| probable xanthan lyase [Blastopirellula marina DSM 3645]
 gi|87288922|gb|EAQ80815.1| probable xanthan lyase [Blastopirellula marina DSM 3645]
          Length = 548

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 25/224 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGK-GHL 58
           +  +DV++ GG  AG  AA  A +LG S  ++   T              IG     G L
Sbjct: 15  DAQFDVVIYGGTSAGIMAAVQAKRLGKSVVVLEPSTRIGGLTTGGLGATDIGNKAAIGGL 74

Query: 59  VREIDALDGLMGRVADA---------AGIQFRVLNVKKGPAVRG---------PRTQADR 100
            RE           AD          A  +F  L V +  A+ G          +   DR
Sbjct: 75  AREFYVAVRDYYSDADHWKFQTAPSFANKRFDDLKVSRQEAMWGFEPSAALQIMQAFVDR 134

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           +   +  Q ++     +   + EV G  T  + I +I +    + R    +  T  +   
Sbjct: 135 QQIPVVYQAKLDRTP-ITAGKPEVQGVMTSGHKIVAIKLLHGDIYRGKVFIDAT--YEGD 191

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
           ++    +    GR  ++      N            +      +
Sbjct: 192 LMAGAGVSYATGREANAAYGETLNGVQTRQAHFHIFQPKVDPYI 235


>gi|258626600|ref|ZP_05721430.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581104|gb|EEW06023.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 395

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 123/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +++  DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +          +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAQTEQGFTLQTTIGDIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I  + + +           F
Sbjct: 175 YKIAEQFGLPVISTTAGLVPFTLHVQDKEDFAP--LSGIAIPVEMSAEC-GKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPRY 274
               ++     QI    T     T  ++ +       N +  A  +  +K       P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQAITTNLVPDVDLAELLNSEKEAHPNQTLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+           + T+L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LEALQTSL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFVGEVMDVTGW 375


>gi|110801569|ref|YP_698348.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens SM101]
 gi|110682070|gb|ABG85440.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium perfringens SM101]
          Length = 403

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 136/415 (32%), Gaps = 88/415 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M  +   VIV+GGG AG  A+  A+                  +     + G G+ ++  
Sbjct: 1   MSKKK--VIVVGGGPAGIMASLTASANNEVVL-----IERNNEIGKKLRLTGGGRCNITN 53

Query: 60  -REIDAL------DGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQRE 110
            REI+        +      A      +++L+   KKG      + + D+++Y  +    
Sbjct: 54  NREIEEFFDKIVTNNKFMYSALYTFSNYQLLDFLSKKGL---EYKVELDQKVYTKS---- 106

Query: 111 ILSQENLDVIQGE-------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-- 155
             ++E + + + E             V  F  E++ I  I+ +    I    +++TTG  
Sbjct: 107 DTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGK 166

Query: 156 ----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW 211
               T   G ++    K   G    S   +L     K DF            +     I 
Sbjct: 167 SFPNTGSDGEMYGILEKY--GHTITSIHAALIPLVTKEDFVKNLQGVAMKDVV-VSAKIK 223

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIECGIT-----------------RTNLETHRIIM 254
            K  ++F D     F      I    +   IT                 ++  E  +II 
Sbjct: 224 KKKYEKFGDMIFTHFGVSGPAILK--LSSYITKALDQGEVELNLDFLSDKSKEELSQIIR 281

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTA 313
            N   + + +  +K   P+   +   +I    G        L+ E  N  + Y   +   
Sbjct: 282 SNPNKTVLNN--LKGTLPQ---NFLKQIFEMLGLTEIRASDLKKEDENKIISYIKEMKLT 336

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAG 367
           + E +  +            +   G  +       KE+   T+E+K I  L+ AG
Sbjct: 337 VRETLTIKA---------AQVTSGGVKV-------KEINASTMESKIIKNLYFAG 375


>gi|15615841|ref|NP_244145.1| hypothetical protein BH3279 [Bacillus halodurans C-125]
 gi|10175902|dbj|BAB06998.1| BH3279 [Bacillus halodurans C-125]
          Length = 422

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 143/444 (32%), Gaps = 79/444 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++VIVIGGG AG  A+  AA+ GA   L          +    AI G G+ ++   +  L
Sbjct: 2   HEVIVIGGGPAGLMASVSAAEHGARVLL----LDKGDKLGRKLAISGGGRCNVTNRM-PL 56

Query: 66  DGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR------ELYRLAMQREIL 112
           D L+      GR   +    F   ++ +     G   +  DR            + + +L
Sbjct: 57  DELIAHIPGNGRFMYSPFSVFNNEDIIRFFERLGIALKEEDRGRMFPVSDKATTVVQTLL 116

Query: 113 SQEN---LDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHI 164
            + N   + V     VA    +   I+ + +++   ++  TV++ TG             
Sbjct: 117 KRINDLGVTVRTNTAVASLEYDDGRIAMVQLKNGERLKTKTVIVATGGQSVPHTGSTGDA 176

Query: 165 GKLKIPAG-----------RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
                 AG            +  +                  L    P           +
Sbjct: 177 YPWAKAAGHTITELYPTEVPITSAEPFIQEKKLQGLSLRDIELSVYAP--------NGKQ 228

Query: 214 TEKQFADERLIPFSFMTDKITN------RQIECGITRTNLETHRIIMENIKHSAIYSGDI 267
            +    D     F               + ++     T      +    I   A++   I
Sbjct: 229 IKTHDGDMIFTHFGLSGPAALRCSQYVVKALKKYKQPTIEMRIDL-RPTIPAEALFQETI 287

Query: 268 KSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
           ++       +++  +         Q   E   +++++        ++  E+  + ++ + 
Sbjct: 288 QNIKAEPKKALKTVLRGIAPERFLQYIYERLRIDSNL-----PCASVRHEVIREIVQQLK 342

Query: 328 GL----------EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG 374
                       EK  +   G +++   I PK    T+ +KK +GLF  G+   I+G TG
Sbjct: 343 SFSFHVNGTLSIEKAFVTGGGVSVKE--IEPK----TMHSKKKAGLFFCGEVLDIHGYTG 396

Query: 375 ---YEEAAAQGLVAGINSARKSNK 395
                 A + G  AG  +A   + 
Sbjct: 397 GYNITCAFSTGYTAGKGAAEYVHH 420


>gi|285013334|gb|ADC32655.1| squalene epoxidase [Aralia elata]
          Length = 547

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I         I      P     +  LG    V
Sbjct: 84  DVIIVGAGVAGSALAYTLAKDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCV 143

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   + G      G   R+    +               +   M+ +  S  N+ +
Sbjct: 144 NEIDAQ-RVFGYALYMDGKNIRLSYPLEKFHEDVTGRSFHNGRFVQRMREKAASLPNVRM 202

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     +K  +  +    +D      
Sbjct: 203 EQGTVTSLVEKKGTVKGVQYKTKDGQEFSA 232


>gi|219667088|ref|YP_002457523.1| FAD dependent oxidoreductase [Desulfitobacterium hafniense DCB-2]
 gi|219537348|gb|ACL19087.1| FAD dependent oxidoreductase [Desulfitobacterium hafniense DCB-2]
          Length = 430

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 28/207 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+GGG AG  AA + AK G    L+                GG    H + 
Sbjct: 1   MSEDKFDAIVVGGGIAGTVAAYLLAKEGLEVILV----ERGNYAGSKNMTGGRIYSHSLG 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                       E       +  + D + +        K            R ++   + 
Sbjct: 57  KIMPDFAREAPVERRITREKISLMTDESNVTLD-FYSSKLGVQGSDSYSILRGVFDQWLA 115

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--------LR 159
            +   +  + +I G  V      +  +  +V      +  +  +L  G           R
Sbjct: 116 EKAE-EAGVQIIPGIRVDDLIIREGKVCGVV-AGEDELEANITILADGVNSLLAQKLGFR 173

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSF 186
           G +    + + A  + + P   + + F
Sbjct: 174 GELAAHHVAVGAKEIIELPPQVIEDRF 200


>gi|320537022|ref|ZP_08037001.1| conserved hypothetical protein TIGR00275 [Treponema phagedenis
           F0421]
 gi|320146097|gb|EFW37734.1| conserved hypothetical protein TIGR00275 [Treponema phagedenis
           F0421]
          Length = 424

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--R 60
           N+   +IVIGGG AG  AA  A+    +  L+               + G G+ ++   R
Sbjct: 25  NKMKTIIVIGGGPAGMMAAYQAS-FNHNVILLESN----AHCGRKLLLTGNGRCNVTNRR 79

Query: 61  EIDALDGLMGRVA---DAAGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQRE----- 110
           EI++      R      +A  QF   ++ K           + D  +Y    + +     
Sbjct: 80  EIESFLQHCSRSCRFLYSAFSQFDNYDLIKFFEDNNCPLIEEEDERMYPKTQKAQTVLDI 139

Query: 111 ---ILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +L   N+ +  Q +      ++  I  +   D  +I C  ++L TG
Sbjct: 140 FISLLKNRNVVIKYQTKAIDLIVDEKKIIGVKT-DEQIINCDGLILATG 187


>gi|317487511|ref|ZP_07946294.1| FAD dependent oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316921236|gb|EFV42539.1| FAD dependent oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 467

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 146/484 (30%), Gaps = 108/484 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAA-----------------KLGASTALITHKTSTIGSM 44
           ++ ++DVI++GGG AG  AA   A                 K G        K       
Sbjct: 1   MSNTFDVIIVGGGPAGLFAAWWLADHSDLSVCIVERGNMVKKRGCP-LGKAKKCMKCDPC 59

Query: 45  SCNPAIGG-----LGKGHLVREIDALD-------GLMGRVADAAGIQFRVL--------- 83
                +GG      GK + + ++   D            + +     F            
Sbjct: 60  HILSGMGGGGLFSDGKLNFIHKLGKTDLTQFMPRSEAESLIEETEAIFDRFGMTAPVFPS 119

Query: 84  ------NVKKGPAVRGPRTQADRELY--------RLAMQREILSQENLDVIQGE-VAGFN 128
                 +++K     G      R+ +         +    E L +  + +  GE V    
Sbjct: 120 DMENAKSIRKEAKKHGIDLLLIRQKHLGSDCLPNHIDGMCEALRERGVSIRTGEDVRHVI 179

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
            E + +  ++      +RC   +L  G      +     K             L    ++
Sbjct: 180 VEDSEVRGLITDKG-ELRCRAAILAPGRVGADWMGDMAKKY---------GMELQQRGIE 229

Query: 189 FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS-----FMTDKITNRQIE---- 239
                           +         + Q  D++   F      F+T +     +     
Sbjct: 230 VGVRVETHNDVMSDLTNVIYDPTFFVQTQRYDDQTRTFCTNPAGFITLENYQDFVCVNGH 289

Query: 240 CGITRTNLETHR------IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG--- 290
               R +  T+       I+ + +  S  Y   I              I++         
Sbjct: 290 AYRNRKSDNTNFAFLSKVILTDPVSDSHGYGVAIGRLASLIGGGKP--ILQRLGDLRRGR 347

Query: 291 -------HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG----- 338
                  H  ++EP       V P  I+ ALP  I       + GLE++N++ PG     
Sbjct: 348 RSTWQRIHNGYVEPT---LTEVTPGDIAMALPGRI---VTNLVEGLEQLNLVVPGIADDS 401

Query: 339 ---YAIEYDYINPKELFPT-LETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKS 393
              YA E  + + +    + LET  +S LF+AG   G +G    AAA G++      RK 
Sbjct: 402 TLLYAPEIKFFSTQVATSSDLET-SVSNLFVAGDGPGVSGNIVSAAATGIIPAKAIVRKF 460

Query: 394 NKLD 397
            K +
Sbjct: 461 GKGE 464


>gi|256426247|ref|YP_003126900.1| FAD dependent oxidoreductase [Chitinophaga pinensis DSM 2588]
 gi|256041155|gb|ACU64699.1| FAD dependent oxidoreductase [Chitinophaga pinensis DSM 2588]
          Length = 520

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IVIG G AG  AA    + G    ++                     G +  E +   G 
Sbjct: 87  IVIGAGPAGLFAALRLVEAGIRPIVLERGKD--VRARRRDLAALNKTGVVNPESNYCFGE 144

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL----------- 117
            G    + G  +   N +        R  +    +    +    +  ++           
Sbjct: 145 GGAGTYSDGKLYTRSNKR----GDINRILSIFVHFGATEKIMYEAHPHIGTNKLPHIIVA 200

Query: 118 -----------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                       + + +V    T  N ++ +          + ++L TG   R + H+  
Sbjct: 201 MREQIVNSGGQVLFEQKVTDILTANNQVTGVRTASGQTFEAARIILATGHSARDIFHLLH 260

Query: 167 LK 168
            K
Sbjct: 261 QK 262


>gi|325289025|ref|YP_004265206.1| geranylgeranyl reductase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964426|gb|ADY55205.1| geranylgeranyl reductase [Syntrophobotulus glycolicus DSM 8271]
          Length = 397

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 13/171 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD IVIGGG AGCE A + AK G    +          + C   +       L      
Sbjct: 2   NYDAIVIGGGPAGCETARLMAKKGYQVMVAEEHRKIGEPIQCAGLVSRR---TLQAAAIP 58

Query: 65  LDGLM----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
              +M    G    + G +   +  K+  A    R++ DR+L + A          L   
Sbjct: 59  AGLIMNQINGAFVHSPGGEVLSIKDKEAYAFVIDRSEFDRKLSKRAQAAGAEI---LTGC 115

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           +  V+G + E      + ++           L  G          ++  PA
Sbjct: 116 RASVSGLSPEGAR---VRLRSGGTETTVRTRLLIGADGANSQVARRINAPA 163


>gi|171058054|ref|YP_001790403.1| electron-transferring-flavoprotein dehydrogenase [Leptothrix
           cholodnii SP-6]
 gi|170775499|gb|ACB33638.1| Electron-transferring-flavoprotein dehydrogenase [Leptothrix
           cholodnii SP-6]
          Length = 434

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 22/169 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   +D IV+G G +G  A    AK G        +             G +     +  
Sbjct: 1   MAEKFDAIVVGAGPSGNAATYTLAKAGLKVL----QIERGEYPGSKNVQGAILYSDALEK 56

Query: 61  -----------EIDALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
                      E   ++  M  + D +  G  +R  +  K P     R    R  +    
Sbjct: 57  IIPDFRDDAPLERHIIEQRMWLLDDNSFVGTHYRSDDYNKPP---YNRYTIIRAQFDKWF 113

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTG 155
             ++     L + +  V     + + +  +   +    +    V+L  G
Sbjct: 114 SSKVREAGALLICETTVEQLLMDDDKVVGVRCDRMGGDVFADVVILADG 162


>gi|15902695|ref|NP_358245.1| hypothetical protein spr0651 [Streptococcus pneumoniae R6]
 gi|15458237|gb|AAK99455.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 397

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 8   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 63

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 64  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 121

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 122 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 175

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 176 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 223

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 224 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 276

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 277 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 334

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 335 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 388

Query: 383 LVAG 386
            VAG
Sbjct: 389 WVAG 392


>gi|15900636|ref|NP_345240.1| hypothetical protein SP_0741 [Streptococcus pneumoniae TIGR4]
 gi|111657505|ref|ZP_01408249.1| hypothetical protein SpneT_02001295 [Streptococcus pneumoniae
           TIGR4]
 gi|116516881|ref|YP_816139.1| hypothetical protein SPD_0645 [Streptococcus pneumoniae D39]
 gi|148989819|ref|ZP_01821113.1| hypothetical protein CGSSp6BS73_01493 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992402|ref|ZP_01822097.1| hypothetical protein CGSSp9BS68_08287 [Streptococcus pneumoniae
           SP9-BS68]
 gi|149007619|ref|ZP_01831236.1| hypothetical protein CGSSp18BS74_03986 [Streptococcus pneumoniae
           SP18-BS74]
 gi|168488409|ref|ZP_02712608.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|168490828|ref|ZP_02714971.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|168492890|ref|ZP_02717033.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|194398231|ref|YP_002037387.1| hypothetical protein SPG_0672 [Streptococcus pneumoniae G54]
 gi|225858552|ref|YP_002740062.1| hypothetical protein SP70585_0787 [Streptococcus pneumoniae 70585]
 gi|237650415|ref|ZP_04524667.1| hypothetical protein SpneC1_06763 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822473|ref|ZP_04598318.1| hypothetical protein SpneC19_09239 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307127707|ref|YP_003879738.1| hypothetical protein SP670_1582 [Streptococcus pneumoniae 670-6B]
 gi|14972215|gb|AAK74880.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|116077457|gb|ABJ55177.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147760774|gb|EDK67745.1| hypothetical protein CGSSp18BS74_03986 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147924761|gb|EDK75845.1| hypothetical protein CGSSp6BS73_01493 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928719|gb|EDK79732.1| hypothetical protein CGSSp9BS68_08287 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183573026|gb|EDT93554.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
 gi|183574550|gb|EDT95078.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576882|gb|EDT97410.1| conserved hypothetical protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|194357898|gb|ACF56346.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|225721694|gb|ACO17548.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
 gi|306484769|gb|ADM91638.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
 gi|332073134|gb|EGI83613.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pneumoniae GA17570]
 gi|332077157|gb|EGI87619.1| HI0933-like family protein [Streptococcus pneumoniae GA17545]
          Length = 391

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 136/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|307305063|ref|ZP_07584812.1| glucose-inhibited division protein A [Sinorhizobium meliloti
           BL225C]
 gi|306902403|gb|EFN32998.1| glucose-inhibited division protein A [Sinorhizobium meliloti
           BL225C]
          Length = 450

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGG AG  AA  AAK G S  L   + +  G++   PA G      L        
Sbjct: 5   DVIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEGATPVAVLPSLRGRWQ 64

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
            L   ++ A+G+  R      G    G     DR   ++ ++R
Sbjct: 65  ALSAELS-ASGVDVRTRRAFVGVDSTGAVLIEDRAAGKVEVRR 106


>gi|319651917|ref|ZP_08006040.1| hypothetical protein HMPREF1013_02652 [Bacillus sp. 2_A_57_CT2]
 gi|317396409|gb|EFV77124.1| hypothetical protein HMPREF1013_02652 [Bacillus sp. 2_A_57_CT2]
          Length = 422

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGG +G  AA  AA+  A   L          +    AI G G+ ++   +  
Sbjct: 2   KYDVIVIGGGPSGLMAAIGAAEQKAKVLL----IDKGTKLGRKLAISGGGRCNVTNRL-P 56

Query: 65  LDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQ 108
           +D ++      GR   +A   F   ++ +     G + +           D+    +   
Sbjct: 57  VDEIIKHIPGNGRFLYSAFSIFSNEDIIRFFENLGIKLKEEDHGRMFPVTDKAQSVVDAL 116

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              L +  +D+     +   + E   + S+ ++   +    +VV+  G
Sbjct: 117 ISRLKELKVDIKTNSPIQDVHYENGRVKSVELKTGDVYEADSVVVAVG 164


>gi|150377188|ref|YP_001313783.1| BFD/(2Fe-2S)-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031735|gb|ABR63850.1| BFD domain protein (2Fe-2S)-binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 453

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV+GGG AG  AA  AAK G S  L   + +  G++   PA G      L        
Sbjct: 5   DIIVVGGGPAGVSAAVEAAKSGLSVVLCEQRPALGGAIHRQPAEGAAPVAALPSLARRWQ 64

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
            L  +++ A+ ++ R      G    G     DR   ++ ++R
Sbjct: 65  SLSAKLS-ASRVEVRTRRAFVGIDSTGAVLIDDRAAGKVEVRR 106


>gi|83589670|ref|YP_429679.1| glucose-inhibited division protein A [Moorella thermoacetica ATCC
           39073]
 gi|83572584|gb|ABC19136.1| Glucose-inhibited division protein A [Moorella thermoacetica ATCC
           39073]
          Length = 434

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAG 367
           +      + +R I GLEK     P YA      + +  + P+     L+ + ++ LF AG
Sbjct: 267 MTPFFPLEILRRIDGLEKARFEDP-YAGGIGNSVRFLAMVPR--DDALKVEGLANLFCAG 323

Query: 368 QINGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMID 413
           +  G   G+ EA   G +AG N+ R    L  +    T +   ++  
Sbjct: 324 ERAGPFVGHTEAIVTGTLAGHNAVRLLAGLAPLVLPATLAVGDIIAY 370


>gi|253990618|ref|YP_003041974.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782068|emb|CAQ85232.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase ubif
           [Photorhabdus asymbiotica]
          Length = 393

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 11/165 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +++DV+V+G G  G   A   A+ G + AL+ H+   +      P +          ++
Sbjct: 5   QQTFDVVVVGAGMIGAATALGLAQEGWTVALLDHQLPQLYDAQSYPDVRVSAISCTSVDL 64

Query: 63  DALDGLMGRVADAAGIQFRVLNV-----------KKGPAVRGPRTQADRELYRLAMQREI 111
               G    V    G+ +R L              K   +       +  + +LA+ ++ 
Sbjct: 65  LKQFGAWDTVLQMRGVPYRKLETWEQNDSNLVFDAKSLGLPELGYMVENRILQLALWQQF 124

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
               NL ++   V      +     + + D + I    +V   G 
Sbjct: 125 EKYPNLTLLCPSVLQSMQRQKKGWLVTLADGTKINTRLIVGADGA 169


>gi|254291826|ref|ZP_04962610.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422262|gb|EDN14225.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 398

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 123/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVDISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDALQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|327311058|ref|YP_004337955.1| geranylgeranyl reductase [Thermoproteus uzoniensis 768-20]
 gi|326947537|gb|AEA12643.1| geranylgeranyl reductase [Thermoproteus uzoniensis 768-20]
          Length = 453

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLVR 60
           ++ S+DV+V+G G AG   A   AK G   A +  K+   +G  +C  A+G      + R
Sbjct: 1   MSESFDVVVVGAGTAGAYTAYNLAKRGFKVAFMDSKSGDKVGVKTCGDALGKHHVDRMAR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            +         V +  G++    +++    + G     DR  +   + +E ++       
Sbjct: 61  FLTP--NPKIFVNEIKGVELFSPDMRTKYVIAGEGYMLDRFNWGKWLVKEAVN-AGAAFF 117

Query: 121 QG-EVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGT 156
           +G        E   +  +   DN        R   VV  +G+
Sbjct: 118 EGHTAVAPILENGHVVGVKATDNRQGVHKEFRAKVVVDASGS 159


>gi|296165563|ref|ZP_06848090.1| probable dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899085|gb|EFG78564.1| probable dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 548

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +  YDV+VIG GH G  AAA  A+ G    ++    ++ G +  N AI      HL+ E 
Sbjct: 11 SNDYDVVVIGAGHNGLTAAAYLARAGLRVVVLEASPTSGGMLGTN-AIFDSAPQHLINEG 69

Query: 63 DALDGL 68
               L
Sbjct: 70 GIQASL 75


>gi|260589358|ref|ZP_05855271.1| thioredoxin-disulfide reductase [Blautia hansenii DSM 20583]
 gi|260540439|gb|EEX21008.1| thioredoxin-disulfide reductase [Blautia hansenii DSM 20583]
          Length = 308

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 43/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD I+IG G AG  AA  A++ G  TA++                   GK     E
Sbjct: 3   MKKEYDFIIIGAGPAGMTAAIYASRAGLKTAMLE-------------GGAPGGKLLKTNE 49

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I    G+                        G +   D   +  +               
Sbjct: 50  ISNWPGIQSES--------------------GSQLAFDMFEHSTSFGAVYEY-------- 81

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G V      +     ++  D ++     V++ TGT
Sbjct: 82  GMVTEVIDGEKKQ--VICADGTVFEAPAVLVATGT 114


>gi|217979667|ref|YP_002363814.1| succinate dehydrogenase flavoprotein subunit [Methylocella
           silvestris BL2]
 gi|217505043|gb|ACK52452.1| succinate dehydrogenase, flavoprotein subunit [Methylocella
           silvestris BL2]
          Length = 612

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 68/220 (30%), Gaps = 50/220 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----------------THKTSTIGS 43
           +I+ S+DVIV+G G AG  A    ++ G  TA I                     + +G 
Sbjct: 22  IIDHSFDVIVVGAGGAGLRATVGCSQAGLRTACISKVFPTRSHTVAAQGGVAASLANMGP 81

Query: 44  MSCNPAIGGLGKGH------------------LVREIDALDGLMGRVADAAGIQF----R 81
            +    +    KG                    V E++       R  D    Q      
Sbjct: 82  DNWKWHMYDTVKGSDWLGDQDSIEYLCRNAPAAVYELEHWGVPFSRTEDGRIYQRPFGGM 141

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLD-VIQGEVAGFNTEKNIISSI 137
             +  KGP  +     ADR  +  AM   +  Q    N +  I+        E      +
Sbjct: 142 TTDFGKGPPAQRTCAAADRTGH--AMLHTLYGQALRYNTEFFIEYFAIDLIMEDGRCRGV 199

Query: 138 V---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V   + D ++   R   V+L TG + R            G
Sbjct: 200 VCLKLDDGTIHRFRAQLVILATGGYGRAYFSATSAHTCTG 239


>gi|333011425|gb|EGK30839.1| protein fixC [Shigella flexneri K-272]
 gi|333021664|gb|EGK40913.1| protein fixC [Shigella flexneri K-227]
          Length = 428

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVLLADG 161


>gi|24111489|ref|NP_705999.1| putative oxidoreductase FixC [Shigella flexneri 2a str. 301]
 gi|30061610|ref|NP_835781.1| putative oxidoreductase FixC [Shigella flexneri 2a str. 2457T]
 gi|110804109|ref|YP_687629.1| putative oxidoreductase FixC [Shigella flexneri 5 str. 8401]
 gi|56404596|sp|Q83SQ7|FIXC_SHIFL RecName: Full=Protein fixC
 gi|24050241|gb|AAN41706.1| flavoprotein [Shigella flexneri 2a str. 301]
 gi|30039852|gb|AAP15586.1| flavoprotein [Shigella flexneri 2a str. 2457T]
 gi|110613657|gb|ABF02324.1| flavoprotein [Shigella flexneri 5 str. 8401]
 gi|281599403|gb|ADA72387.1| Protein fixC [Shigella flexneri 2002017]
 gi|313646579|gb|EFS11040.1| protein fixC [Shigella flexneri 2a str. 2457T]
 gi|332762390|gb|EGJ92657.1| protein fixC [Shigella flexneri 2747-71]
 gi|332762603|gb|EGJ92868.1| protein fixC [Shigella flexneri 4343-70]
 gi|332764885|gb|EGJ95113.1| protein fixC [Shigella flexneri K-671]
 gi|332768831|gb|EGJ99010.1| flavoprotein (electron transport), possibly involved in anaerobic
           carnitine metabolism [Shigella flexneri 2930-71]
 gi|333009308|gb|EGK28764.1| protein fixC [Shigella flexneri K-218]
 gi|333022307|gb|EGK41545.1| protein fixC [Shigella flexneri K-304]
          Length = 428

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVLLADG 161


>gi|255321042|ref|ZP_05362212.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SK82]
 gi|255301866|gb|EET81113.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SK82]
          Length = 452

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T ++                            +  
Sbjct: 143 FDVLVIGGGPAGNTAAIYAARKGIRTGIVA---------------------------ERF 175

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +    D       + N       +GP+  A  E +    + +I    NL     +VA
Sbjct: 176 GGQVMDTMD-------IENFTSVTKTQGPKFAAAMEEHVREYEVDI---MNL----QKVA 221

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                +  +S    + + + + +   TV+L+TG   R     G        +      D 
Sbjct: 222 SIKGAEETVSGLVEVTLDNGARLESKTVILSTGARWRQMNVPGEQEYATRGVAYCPHCDG 281

Query: 178 P 178
           P
Sbjct: 282 P 282


>gi|167770273|ref|ZP_02442326.1| hypothetical protein ANACOL_01616 [Anaerotruncus colihominis DSM
           17241]
 gi|167667595|gb|EDS11725.1| hypothetical protein ANACOL_01616 [Anaerotruncus colihominis DSM
           17241]
          Length = 422

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +  +PG E    I P     G ++ +  +  +     +    +  LF AG+
Sbjct: 264 MSPYFGLRCLHMLPGFENARYIDPCAGGRGNSMRFFAMAVR--DDAMHVTGVENLFCAGE 321

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
             G   G+ EA   G +AG N+A  +   +   + R  +    +    T + + +P  + 
Sbjct: 322 KAGLFVGHTEAIVTGTLAGYNAALAACGQEPRVYPRGLAVGEAIAW--TREQMAQPKGL- 378

Query: 428 TSRAEYRISLRPDNADNRLTPIGMKLGCIGERR 460
               E R +    +    L     + G   + R
Sbjct: 379 ----EKRYTFSGAS----LLEHLRECGLDSDDR 403


>gi|298675497|ref|YP_003727247.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
 gi|298288485|gb|ADI74451.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
          Length = 396

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 63/181 (34%), Gaps = 31/181 (17%)

Query: 1   MI-NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI  +SYD++V+G G AG  AA  AA+ G S  LI  K      + C    G L     +
Sbjct: 1   MIPEKSYDIVVVGAGPAGSTAANYAARNGKSVLLIDRKKDIGTPLQCG---GFLPHYETL 57

Query: 60  RE----------IDALDGLMGRVA---------DAAGIQFRVLNVKKGPAVRGPRTQADR 100
           RE          ++                   D    QF V       A    R + D+
Sbjct: 58  RELVPNAELPYTLEEYPSECIHTTTSCQRFIAPDGCSKQFDVT------ADAIDRRRFDK 111

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
            L + A + ++       V   E+ G   E   +      D  +I  +    +T    +G
Sbjct: 112 YLAKEAAKSDVQVMPGTTV--TEINGSTLELEGVFGSFTTDADVIIGADGPNSTVAKSKG 169

Query: 161 V 161
           +
Sbjct: 170 L 170


>gi|330835258|ref|YP_004409986.1| geranylgeranyl reductase [Metallosphaera cuprina Ar-4]
 gi|329567397|gb|AEB95502.1| geranylgeranyl reductase [Metallosphaera cuprina Ar-4]
          Length = 453

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
          M   +YDV++IGGG AG  AA   A  G    LI  K  S IG   C  A+ 
Sbjct: 1  MKQLNYDVLIIGGGFAGSTAAWHLANKGLKILLIDSKPWSRIGDKPCGDAVS 52


>gi|23099756|ref|NP_693222.1| hypothetical protein OB2301 [Oceanobacillus iheyensis HTE831]
 gi|22777986|dbj|BAC14257.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 421

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           YDV VIGGG +G  AA  AA+ GA T L          +    AI G G+ ++  
Sbjct: 2  KYDVTVIGGGPSGLMAALSAAEHGAKTLL----IEKGNKLGKKLAISGGGRCNVTN 53


>gi|20090343|ref|NP_616418.1| geranylgeranyl reductase [Methanosarcina acetivorans C2A]
 gi|74532634|sp|Q8TQQ6|GGR_METAC RecName: Full=Digeranylgeranylglycerophospholipid reductase;
           Short=DGGGPL reductase; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate
           reductase; AltName: Full=Geranylgeranyl reductase;
           Short=GGR
 gi|19915347|gb|AAM04898.1| geranylgeranyl reductase [Methanosarcina acetivorans C2A]
          Length = 407

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 13/162 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV+VIG G AG  AA  AA+ G    LI  +      + C     G+ K +L + 
Sbjct: 1   MKDIYDVLVIGAGPAGSIAAKTAAEKGLDVLLIEKRQEIGDPVRCAE---GVNKEYLKKH 57

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYRLAMQREILSQ---ENL 117
           ++  +      AD  G +    N  K   A      +    L R    R +         
Sbjct: 58  VEIDNS--WICADLKGSRIYSPNGTKVEMAEEISGGEVGYVLERKIFDRALAEHAAKAGA 115

Query: 118 DVI-QGEVAGFNTEKNIISSIVM-QDNSMI--RCSTVVLTTG 155
           +V  +    G   E + +    +         R   V+   G
Sbjct: 116 EVRVKTRATGLIIEDDFVKGARLMNLGKEYEVRAKIVIGADG 157


>gi|218884573|ref|YP_002428955.1| Thioredoxin reductase [Desulfurococcus kamchatkensis 1221n]
 gi|218766189|gb|ACL11588.1| Thioredoxin reductase [Desulfurococcus kamchatkensis 1221n]
          Length = 338

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            YDVIVIGGG AG  AA  +A+ G  T ++T
Sbjct: 23 EKYDVIVIGGGPAGLTAALYSARYGFKTIIVT 54


>gi|266619471|ref|ZP_06112406.1| invasion protein IbeA [Clostridium hathewayi DSM 13479]
 gi|288868957|gb|EFD01256.1| invasion protein IbeA [Clostridium hathewayi DSM 13479]
          Length = 456

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP---------------AIG 51
           DV+V GGG AG  AA  +A+ GA T L+       G +                   A  
Sbjct: 18  DVVVCGGGTAGFTAALASARNGADTILV----ERFGHVGGTLVNGAGPLHSFFNLYKAFA 73

Query: 52  GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           G  K  +VR I     ++ R+ +A+G     L   KG       T  D E+++      +
Sbjct: 74  GAEKTQVVRGIPQE--IVTRMMEASGSPGH-LEQDKGGNYDSAITLIDWEIFKDVAFTML 130

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQ 140
                  ++   +A    +   +S ++++
Sbjct: 131 EEAGVRILLHTVIADVIKDGERVSGVIIE 159


>gi|148256215|ref|YP_001240800.1| putative fumarate/succinate reductase flavoprotein subunit
           [Bradyrhizobium sp. BTAi1]
 gi|146408388|gb|ABQ36894.1| putative fumarate/succinate reductase flavoprotein subunit
           [Bradyrhizobium sp. BTAi1]
          Length = 542

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 56/175 (32%), Gaps = 28/175 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGKGH 57
           DV+V+GGG AG  AA  AA+ GA   L              S  G    +PA        
Sbjct: 23  DVLVLGGGPAGTWAAISAAERGARVVLADKGFCGTSGATAPSGTGVWYVDPAPAQREAAM 82

Query: 58  LVREIDALDG------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----LYRLA 106
             RE  A  G       M RV D    Q   L     P   G   Q  R       Y   
Sbjct: 83  ASRE--AAGGYLQSRHWMARVLDETYAQSNRLAEWGYPYPAGDDGQPRRNSLQGPEYMRL 140

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIIS----SIVMQ--DNSMIRCSTVVLTTG 155
           M++   S     +          + +        +  Q  D+  +R   VV+ TG
Sbjct: 141 MRKRTKSAGVTILDHSPALELLVDDSGAVAGASGVRRQHEDSWTVRAGAVVVATG 195


>gi|222085954|ref|YP_002544486.1| 2-octaprenyl-6-methoxyphenol hydroxylase protein [Agrobacterium
           radiobacter K84]
 gi|221723402|gb|ACM26558.1| 2-octaprenyl-6-methoxyphenol hydroxylase protein [Agrobacterium
           radiobacter K84]
          Length = 400

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  +V VIGGG AG  AA   A+ G   AL+     KT    +   + +I        + 
Sbjct: 2   KQVEVAVIGGGLAGMVAAVALARGGRPVALVAAPYTKTDRRTTALMDQSIR------FLE 55

Query: 61  EIDALDGLMGRVADAAGIQ-----FRVLNVKKGPAVRGPRTQADRELYRL-------AMQ 108
            +     +    A    +Q      R+L        R      D   Y +        + 
Sbjct: 56  RLALWGSIAPSTAALTTMQIIDGTTRLLRAPTVS-FRASEIGLDAFGYNIPNAVLLGTLS 114

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + ++ N+ +I+   +      + ++ I ++D   +  + VV   G
Sbjct: 115 EAVKAEGNITLIETTASEVAIRDDSVT-ITLEDGDTVEAAFVVGADG 160


>gi|325979068|ref|YP_004288784.1| alkyl hydroperoxide reductase subunit F [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178996|emb|CBZ49040.1| alkyl hydroperoxide reductase subunit F [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 512

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 63/264 (23%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T L+                            +  
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGIKTGLLA---------------------------ETF 241

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N+   P + GP   +  E +  +         ++D+++ +  
Sbjct: 242 GGQVMETV-------GIENMIGTPYIEGPALMSQVEEHTKSY--------DVDIMKAQ-K 285

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSP-- 178
                K  +  + + + ++++  T +L+ G   R     G +      +      D P  
Sbjct: 286 AIAIHKKDVIEVTLANGAILKSKTAILSLGAKWRNINVPGEVEFRNKGVTYCPHCDGPLF 345

Query: 179 -----------SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                      ++ L  +       +          L    ++ D+ E    D   I  +
Sbjct: 346 TDKKVAVIGGGNSGLEAAIDLAGLASHVYILEFLPELKADKVLQDRAEAH--DNITILKN 403

Query: 228 FMTDKITNRQIECGITRTNLETHR 251
             T +I   +   G+  T+ ET  
Sbjct: 404 VATKEILGDEQVTGLIYTDRETGE 427


>gi|161504799|ref|YP_001571911.1| putative oxidoreductase FixC [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866146|gb|ABX22769.1| hypothetical protein SARI_02923 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 428

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 34/175 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++G G AG  AA V A+ GA                    L  H    I  
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLERI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADR 100
               P        +  +  E  A     G +A D    + +  + +        R++ D 
Sbjct: 59  ---LPDFAARAPVERLITHEKLAFMTEQGVMAVDYVNAEEQAPSRRS---YSVLRSKFD- 111

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                 M++   +   L +    V         +  +   D  +I    V+L  G
Sbjct: 112 ---AWLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDIIEAKVVILADG 161


>gi|323190276|gb|EFZ75552.1| protein fixC [Escherichia coli RN587/1]
          Length = 428

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSVMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|256020117|ref|ZP_05433982.1| putative oxidoreductase FixC [Shigella sp. D9]
 gi|332281270|ref|ZP_08393683.1| flavoprotein [Shigella sp. D9]
 gi|332103622|gb|EGJ06968.1| flavoprotein [Shigella sp. D9]
          Length = 428

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSVMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|311280793|ref|YP_003943024.1| glucose-inhibited division protein A [Enterobacter cloacae SCF1]
 gi|308749988|gb|ADO49740.1| glucose-inhibited division protein A [Enterobacter cloacae SCF1]
          Length = 456

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 10/153 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+GGG +G  AA  AA+ G ST LI  +    G M     +  +       E     
Sbjct: 18  DVLVVGGGPSGIAAALSAAREGVSTMLIE-RFGCFGGMMTTAGVESIAWWR--HENTVES 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G + R  +      R L   + P  +      + E ++L     +       V+      
Sbjct: 75  GGLAREIEETA---RQLGASQ-PEPQSLSQAINAERFKLVADTMLEDAGVRRVLHISAVE 130

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
              + + +  ++ +       I    ++  TG 
Sbjct: 131 VIKDGDELQGVITESKSGRQAILAKVIIDCTGD 163


>gi|288906157|ref|YP_003431379.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus gallolyticus
           UCN34]
 gi|288732883|emb|CBI14462.1| putative NAD(FAD)-utilizing dehydrogenases [Streptococcus
           gallolyticus UCN34]
          Length = 390

 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 137/424 (32%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   NTYDTIIIGGGPAGMMAAISSSYYGNQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQRE 110
            +D LM      GR   +   QF   ++ +     G   + +       +      +   
Sbjct: 58  -IDDLMEGIPGNGRFLYSVFSQFDNHDIIRFFEENGVALKVEDHGRVFPKTDKSKTIIDA 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG--KLK 168
           +  + N      E+ G       + S+   DN      +    T  F+ G + +      
Sbjct: 117 LAHKIN------ELGGTVLTNTEVVSVKKIDNL-FHVKS---ATDEFICGKLIVTTGGKA 166

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+       +   +     F  +   L+      L      +   E Q      +  S+
Sbjct: 167 YPS----TGSTGFGYEIARHFKLNLTELEAAESPLL----TDFPHKELQGISLDDVCLSY 218

Query: 229 MTDKITNRQIECGITRTNLETHRI--IMENIKHSAIYSGDIKSYGPRYC----------- 275
               IT+  +      +     R+   ++  +   +      S    +            
Sbjct: 219 QKHHITHDLLFTHFGLSGPAALRLSSFIKGGEIITLDLIPKLSTEELHTFLAEQREKSLK 278

Query: 276 ----PSIEDKIVRFGERNGHQIFLEPEGLNTD--VVYPNGISTALPEEIQHQFIRTIPGL 329
                 + +++V F      Q F E     T             LP ++  +       L
Sbjct: 279 NALKVILPERLVSF----LAQPFPEKVKQLTPQQEKELVDNIKELPIKVTGKM-----SL 329

Query: 330 EKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQG 382
            K  + + G       ++ KE+ P TLE+K++ GL+ AG+   IN  TG      A   G
Sbjct: 330 AKSFVTKGG-------VDLKEINPKTLESKQVPGLYFAGEVLDINAHTGGFNITVALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|322391644|ref|ZP_08065112.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus peroris
           ATCC 700780]
 gi|321145455|gb|EFX40848.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus peroris
           ATCC 700780]
          Length = 391

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 138/422 (32%), Gaps = 76/422 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKISELGGQVATQTEIVSVKKVDDQFVLKSADQNFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E ++V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDTLPQLS-ERELVDFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVV--YPNGISTALPEEIQHQFIRTIPGLEKVN------ 333
            N  +          PE L   +V  YP  +   L E+ + Q +++I  L+         
Sbjct: 271 ENREKSLKNALKTLLPERLAEFLVQGYPEKVK-QLTEKERDQLLQSIKSLKIPVTGKMSL 329

Query: 334 ---IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLV 384
               +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G V
Sbjct: 330 AKSFVTKG-GVSLKKINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWV 384

Query: 385 AG 386
           AG
Sbjct: 385 AG 386


>gi|194434562|ref|ZP_03066820.1| protein FixC [Shigella dysenteriae 1012]
 gi|194417215|gb|EDX33326.1| protein FixC [Shigella dysenteriae 1012]
 gi|332098040|gb|EGJ03013.1| protein fixC [Shigella dysenteriae 155-74]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ G    +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGTQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161


>gi|325967633|ref|YP_004243825.1| geranylgeranyl reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323706836|gb|ADY00323.1| geranylgeranyl reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 380

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +  +YD I++G G AG  AA VAA+LG    +              P  GG
Sbjct: 1  MGNTYDAIIVGAGPAGSMAAYVAARLGLRVLV----IDRFRFPRMKPCGGG 47


>gi|239981146|ref|ZP_04703670.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Streptomyces albus J1074]
 gi|291453014|ref|ZP_06592404.1| NADH dehydrogenase [Streptomyces albus J1074]
 gi|291355963|gb|EFE82865.1| NADH dehydrogenase [Streptomyces albus J1074]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +  +Y+VIV+GGG AG EAA    + G  T L+   
Sbjct: 1  MAETYEVIVVGGGFAGIEAATKLGRAGVRTLLVDVH 36


>gi|260768158|ref|ZP_05877092.1| hypothetical protein VFA_001207 [Vibrio furnissii CIP 102972]
 gi|260616188|gb|EEX41373.1| hypothetical protein VFA_001207 [Vibrio furnissii CIP 102972]
 gi|315179858|gb|ADT86772.1| Predicted enoate reductase [Vibrio furnissii NCTC 11218]
          Length = 648

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKG----- 56
           S+DVIV+GGG AGCEAA   A+   +  LI   +              +  + K      
Sbjct: 510 SHDVIVLGGGLAGCEAAIHLAREHKNVTLIEMNSELSPDANIRHRPLLLAEIEKSGITVL 569

Query: 57  --HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
             H   E+ A DG++   AD   +     +V      R  R   D
Sbjct: 570 KNHKAVEVRA-DGVVCENADGETVHIDGSSVICALGQRSRRASVD 613



 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+GGG AG +AA  AAK G    L   K   +G +     IG         E+  L  
Sbjct: 391 VLVVGGGPAGLQAALTAAKRGHDVILCE-KGDEVGGI----LIGEQAIS-FKYEMYQLGV 444

Query: 68  LMGRVADAAGIQFRVLNV 85
            +G++ + AG+  R LN 
Sbjct: 445 TLGKLCEDAGVDIR-LNT 461


>gi|311031249|ref|ZP_07709339.1| HI0933 family protein [Bacillus sp. m3-13]
          Length = 431

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 36/175 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---- 60
            YDVI+IGGG +G  A+  AA+  A   L          +    AI G G+ ++      
Sbjct: 7   KYDVIIIGGGPSGLMASIAAAEQKARVLL----IDKGNKLGRKLAISGGGRCNVTNRLPV 62

Query: 61  -------------------EIDALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRTQADR 100
                              E +  D  + +  +  GIQ +  +  +  P     ++  D 
Sbjct: 63  DEIIKHIPGNGRFLYSAFSEFNNED--IIKFFEKLGIQLKEEDHGRMFPVSDKAQSVVDA 120

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            L R+   R +  + N       V     +++    ++++    + CS VV+  G
Sbjct: 121 LLNRMKELR-VEMRTNTS-----VETVEYDEDRTRGVLLKTGEFLECSCVVIAVG 169


>gi|307595627|ref|YP_003901944.1| geranylgeranyl reductase [Vulcanisaeta distributa DSM 14429]
 gi|307550828|gb|ADN50893.1| geranylgeranyl reductase [Vulcanisaeta distributa DSM 14429]
          Length = 380

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +   YDVIVIG G +G  AA VAAKLG    +              P  GG
Sbjct: 1  MVNMYDVIVIGAGPSGSMAAYVAAKLGLRVLI----LDRFRFPRIKPCGGG 47


>gi|301299178|ref|ZP_07205467.1| thioredoxin-disulfide reductase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853221|gb|EFK80816.1| thioredoxin-disulfide reductase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 311

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG G  G  AA  A++     A++                          +
Sbjct: 1   MSDKYDVIVIGAGPGGMTAALYASRANLKVAML--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   A+       V N     ++ GP    +          E         + 
Sbjct: 35  RGVYGGQMNNTAE-------VENYPGFKSILGPDLAEEMFQSSTQFGAE--------FVY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V     + N I  +   D   +    V++ TG+  R +   G+ K   
Sbjct: 80  GNVEDLTVDDNGIKHVKTDDG-ELEAPVVIIATGSQYRKLGVPGEEKYSG 128


>gi|227891253|ref|ZP_04009058.1| thioredoxin reductase [Lactobacillus salivarius ATCC 11741]
 gi|227866831|gb|EEJ74252.1| thioredoxin reductase [Lactobacillus salivarius ATCC 11741]
          Length = 311

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG G  G  AA  A++     A++                          +
Sbjct: 1   MSDKYDVIVIGAGPGGMTAALYASRANLKVAML--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   A+       V N     ++ GP    +          E         + 
Sbjct: 35  RGVYGGQMNNTAE-------VENYPGFKSILGPDLAEEMFQSSTQFGAE--------FVY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V     + N I  +   D   +    V++ TG+  R +   G+ K   
Sbjct: 80  GNVEDLTVDDNGIKHVKTDDG-ELEAPVVIIATGSQYRKLGVPGEEKYSG 128


>gi|205351418|ref|YP_002225219.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205271199|emb|CAR35987.1| FixC protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626441|gb|EGE32784.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGRVVGVE-ADGDILEAKVVILADG 161


>gi|90962691|ref|YP_536607.1| thioredoxin reductase [Lactobacillus salivarius UCC118]
 gi|90821885|gb|ABE00524.1| Thioredoxin reductase [Lactobacillus salivarius UCC118]
          Length = 311

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG G  G  AA  A++     A++                          +
Sbjct: 1   MSDKYDVIVIGAGPGGMTAALYASRANLKVAML--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   A+       V N     ++ GP    +          E         + 
Sbjct: 35  RGVYGGQMNNTAE-------VENYPGFKSILGPDLAEEMFQSSTQFGAE--------FVY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V     + N I  +   D   +    V++ TG+  R +   G+ K   
Sbjct: 80  GNVEDLTVDDNGIKHVKTDDG-ELEAPVVIIATGSQYRKLGVPGEEKYSG 128


>gi|198241975|ref|YP_002214032.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207855591|ref|YP_002242242.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197936491|gb|ACH73824.1| protein FixC [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|206707394|emb|CAR31667.1| FixC protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326621776|gb|EGE28121.1| protein FixC [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGRVVGVE-ADGDILEAKVVILADG 161


>gi|297620212|ref|YP_003708317.1| geranylgeranyl reductase [Methanococcus voltae A3]
 gi|297379189|gb|ADI37344.1| geranylgeranyl reductase [Methanococcus voltae A3]
          Length = 391

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           SYDV+VIG G AG  A+  A+K+GA T L+         + C
Sbjct: 6  NSYDVVVIGAGPAGSMASYNASKMGAKTLLVEKSQEIGEPVRC 48


>gi|328862900|gb|EGG12000.1| hypothetical protein MELLADRAFT_89168 [Melampsora larici-populina
           98AG31]
          Length = 188

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 33/119 (27%)

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI 293
           T  Q+ C       +T  I+  ++  +     +++       PS+E ++++F +++ H +
Sbjct: 55  TTNQLFCWKAHAETQTRDIVRNDLDKAVHIHEEVQGQ-----PSLESEVIKFSDQDSHMV 109

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELF 352
           +LEP                         + T    + V + +P Y +EY++++PK+L 
Sbjct: 110 WLEPR------------------------LHT----KAVEMNQPSYEVEYNHVDPKDLT 140


>gi|325969844|ref|YP_004246036.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
          768-28]
 gi|323709047|gb|ADY02534.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
          768-28]
          Length = 448

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIGGG AG EA+   A++G    L+
Sbjct: 10 EYDVVVIGGGIAGMEASLDLAEMGFKVLLV 39


>gi|289435267|ref|YP_003465139.1| hypothetical protein lse_1904 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171511|emb|CBH28055.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 420

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLGKGHL 58
            +DVIVIGGG +G  AA  AA+      LI        K    G   CN       +  +
Sbjct: 2   DFDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEII 61

Query: 59  VR----------EIDALDGL-MGRVADAAGIQFRVLNVKK-GPAVRGPRTQADRELYRLA 106
                          A D   + R  +  G+  +  +  +  P     R+ A+      A
Sbjct: 62  KHIPGNGRFLYSAFHAFDNEDIIRFFENLGVALKEEDHGRMFPVSNSARSVAE------A 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           M   +        +Q  V   N     +  + ++D   I  + V++  G
Sbjct: 116 MIARMEKLGVKIYMQTAVKQVNYADGKVVGVTLKDGQEISTNAVIVAVG 164


>gi|261245310|emb|CBG23096.1| FixC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267991744|gb|ACY86629.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156707|emb|CBW16179.1| probable flavoprotein subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323128395|gb|ADX15825.1| FixC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987029|gb|AEF06012.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|168243520|ref|ZP_02668452.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262249|ref|ZP_02684222.1| protein FixC [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194450228|ref|YP_002044045.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197261725|ref|ZP_03161799.1| protein FixC [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|194408532|gb|ACF68751.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197239980|gb|EDY22600.1| protein FixC [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205337487|gb|EDZ24251.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205348816|gb|EDZ35447.1| protein FixC [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|62178642|ref|YP_215059.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126275|gb|AAX63978.1| related to carnitine metabolism [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713095|gb|EFZ04666.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----- 111

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E   +E   +I G  V         +  +   D  ++    V+L  G
Sbjct: 112 -AWLMEQAEEEGAQLITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|1130674|emb|CAA50799.1| fixC [Escherichia coli]
          Length = 188

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 26/170 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   +D I++G G AG  AA V A+ GA   +         S       GG    H +  
Sbjct: 1   MTDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLEH 56

Query: 61  -----------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYRL 105
                      E       +  + + + +     N  +    +      R++ D      
Sbjct: 57  IIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFD----AW 112

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 LMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 160


>gi|213423029|ref|ZP_03356047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 35

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           GLM +  D AGIQF++LN  KGPAVR  R QADR
Sbjct: 1   GLMAKAIDQAGIQFKILNASKGPAVRATRAQADR 34


>gi|168820945|ref|ZP_02832945.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342371|gb|EDZ29135.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320084316|emb|CBY94109.1| FixC protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|168230343|ref|ZP_02655401.1| protein FixC [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194472124|ref|ZP_03078108.1| protein FixC [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194458488|gb|EDX47327.1| protein FixC [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335075|gb|EDZ21839.1| protein FixC [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|16763467|ref|NP_459082.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56404647|sp|Q8ZRW9|FIXC_SALTY RecName: Full=Protein fixC
 gi|16418574|gb|AAL19041.1| related to carnitine metabolism protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312911048|dbj|BAJ35022.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222352|gb|EFX47424.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|16759070|ref|NP_454687.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29140620|ref|NP_803962.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|200388032|ref|ZP_03214644.1| protein FixC [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|213051843|ref|ZP_03344721.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427519|ref|ZP_03360269.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213650462|ref|ZP_03380515.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852501|ref|ZP_03382033.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289826198|ref|ZP_06545310.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|56404644|sp|Q8Z9K9|FIXC_SALTI RecName: Full=Protein fixC
 gi|25303024|pir||AG0511 FixC protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501360|emb|CAD01231.1| FixC protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136244|gb|AAO67811.1| FixC protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|199605130|gb|EDZ03675.1| protein FixC [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|150390403|ref|YP_001320452.1| glucose-inhibited division protein A [Alkaliphilus metalliredigens
           QYMF]
 gi|149950265|gb|ABR48793.1| glucose-inhibited division protein A [Alkaliphilus metalliredigens
           QYMF]
          Length = 426

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 323 IRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYE 376
           +R+I G E      P     G +I Y  I P+    T++   +  L  AG+ +G   G+ 
Sbjct: 275 LRSIKGFENAKFEDPYSGGIGNSIRYLSIAPR--NNTMKVASLQNLLCAGEKSGLFVGHT 332

Query: 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           EA   G +AG NS R +  +  +      +  G +I     + + E
Sbjct: 333 EAIVTGSLAGHNSVRVALGMPLLELPINLA-SGDLIAYANERILTE 377


>gi|168464381|ref|ZP_02698284.1| protein FixC [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195632990|gb|EDX51444.1| protein FixC [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGRVVGVE-ADGDILEAKVVILADG 161


>gi|283835106|ref|ZP_06354847.1| FixC protein [Citrobacter youngae ATCC 29220]
 gi|291069404|gb|EFE07513.1| FixC protein [Citrobacter youngae ATCC 29220]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 40/178 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D I++G G AG  AA V A+ GA                    L  H    I  
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLERI-- 58

Query: 44  MSCNPAIGGLG--KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQ 97
               P        +  +  E  A       + D+  +     N ++  A +      R++
Sbjct: 59  ---IPGFAEQAPIERMITHEKLAF------MTDSGAMTIDYCNGEEAAASQVSYSVLRSK 109

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            D       M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 110 FD----AWLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|331266753|ref|YP_004326383.1| hypothetical protein SOR_1389 [Streptococcus oralis Uo5]
 gi|326683425|emb|CBZ01043.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 391

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 132/436 (30%), Gaps = 104/436 (23%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATNKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKIDDQFVLKSADQNFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRI--------------------------IMENIKHSA 261
           +    IT+  +      +     RI                          I EN + S 
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALRISSFVKGGEVLSLDVLPQLSERDLAAFIEENREKS- 276

Query: 262 IYSGDIKSYGPRYC-----PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPE 316
                +K+  P            +K+ +  E+   Q+                I T L  
Sbjct: 277 -LKNALKTLLPERLADFFVKGFPEKVKQLTEKERDQL-------------LQSIKT-LKI 321

Query: 317 EIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTT 373
            +  +       L K  + + G +++   INPK    TLE+K + GL  AG+   IN  T
Sbjct: 322 PVTGKM-----SLAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFAGEVLDINAHT 370

Query: 374 G---YEEAAAQGLVAG 386
           G      A   G VAG
Sbjct: 371 GGFNITSALCTGWVAG 386


>gi|322615899|gb|EFY12816.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620684|gb|EFY17544.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623965|gb|EFY20802.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627413|gb|EFY24204.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630720|gb|EFY27484.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638060|gb|EFY34761.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640545|gb|EFY37196.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322648363|gb|EFY44819.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656932|gb|EFY53218.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657357|gb|EFY53629.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663677|gb|EFY59877.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666510|gb|EFY62688.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672331|gb|EFY68443.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676357|gb|EFY72428.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679550|gb|EFY75595.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686121|gb|EFY82105.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194965|gb|EFZ80151.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200126|gb|EFZ85213.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201053|gb|EFZ86122.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209450|gb|EFZ94383.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212298|gb|EFZ97122.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216603|gb|EGA01329.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219353|gb|EGA03839.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225769|gb|EGA09989.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228690|gb|EGA12819.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236696|gb|EGA20772.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239803|gb|EGA23850.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242149|gb|EGA26178.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249426|gb|EGA33342.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252239|gb|EGA36090.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256670|gb|EGA40400.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261296|gb|EGA44883.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265524|gb|EGA49020.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271688|gb|EGA55106.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGRVVGVE-ADGDILEAKVVILADG 161


>gi|326391078|ref|ZP_08212625.1| glucose-inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992863|gb|EGD51308.1| glucose-inhibited division protein A [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 427

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 136/413 (32%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISS 136
               +                D  +    +++ +L +     +         E K  I  
Sbjct: 75  RHVNI-----NFPGHAHANLYDVTMVEPMIRKMLLEKGVTIKLMTRATDVVMESKKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVVVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLENLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++     S    E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANESIKTKE 379


>gi|307267526|ref|ZP_07549007.1| glucose-inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917458|gb|EFN47751.1| glucose-inhibited division protein A [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 427

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 136/413 (32%), Gaps = 63/413 (15%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDALDG-LMGRVADAAG 77
             A K GA   L+  KT  +  + C    G     G+     E+  L G  +  + D A 
Sbjct: 18  LTARKAGAEVVLLE-KTDML--LGCGLVGGIMRNNGRYTAAEELIYLGGNELIEITDKAA 74

Query: 78  IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISS 136
               +                D  +    +++ +L +     +         E K  I  
Sbjct: 75  RHVNI-----NFPGHAHANLYDVTMVEPMIRKMLLEKGVTIKLMTRATDVVMESKKRIKG 129

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR- 195
           IV+ D+++      + TTG+   G +           M      S       F       
Sbjct: 130 IVLADDTIEYGDVFIETTGST--GPMGNCLRYGNGCAMCILRCPS-------FGPRISIS 180

Query: 196 LKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIME 255
            + G    L  +           ADE    FS            C + + +L   + I E
Sbjct: 181 YRAGVEDLLGMR-----------ADEVYGAFS----------GSCKLNKESL--SKEIRE 217

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315
            ++   +    +    P+   ++E   ++       Q +  PE     ++   G    + 
Sbjct: 218 KLERDGVIVLPV----PKEDINMEKLNLK-----VCQQYALPEYAENVILLDTGYVKLMT 268

Query: 316 EEIQHQFIRTIPGLEKVNIIRP---GYA--IEYDYINPKELFPTLETKKISGLFLAGQIN 370
                + +R IPGLE+     P   G A  + Y  + P+    T++   +  L  AG+ +
Sbjct: 269 PFYPLEKLRKIPGLERARYDDPYSGGKANSVRYLSMAPR--DNTMKVIGLENLLCAGEKS 326

Query: 371 GT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
           G  TG+ EA   G +AG NS R +  +  +   R  +   ++     S    E
Sbjct: 327 GLFTGHTEAMVTGCLAGHNSVRLALGMPLLELPRNLASGDLIAYANESIKTKE 379


>gi|260575226|ref|ZP_05843226.1| dihydrolipoamide dehydrogenase [Rhodobacter sp. SW2]
 gi|259022486|gb|EEW25782.1| dihydrolipoamide dehydrogenase [Rhodobacter sp. SW2]
          Length = 464

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  R++DVIVIG G  G  AA  AA+LG S A++       I    G +     +     
Sbjct: 1   MATRNFDVIVIGAGPGGYVAAIRAAQLGLSVAIVEREHLGGICLNWGCIPTKALLRSAEV 60

Query: 56  GHLVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+           G   D A +  R          RG   Q    +  L  + +I   
Sbjct: 61  FHLMHRAKEFGLSASGIGFDLAAVVAR---------SRGVAKQLSSGIGHLMKKNKI--- 108

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV 161
               V+ G           + S+        +   ++VL TG   R +
Sbjct: 109 ---TVVMGAAK---LAGKGVVSVTTDKGEESLTAKSIVLATGARAREL 150


>gi|238911136|ref|ZP_04654973.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 428

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|121535835|ref|ZP_01667635.1| glucose-inhibited division protein A [Thermosinus carboxydivorans
           Nor1]
 gi|121305607|gb|EAX46549.1| glucose-inhibited division protein A [Thermosinus carboxydivorans
           Nor1]
          Length = 420

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGY 375
           +RTIPGLE      P YA      + Y  I P     +L+   +  LF  G+ +G   G+
Sbjct: 269 LRTIPGLEAARYEDP-YAGGIGNSVRYLGIAP--CDNSLKVAGVDNLFCGGEKSGILVGH 325

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            EA   GL+AG N+ R    +  +   R  +
Sbjct: 326 TEAIVTGLLAGHNAVRYCLDMQYLELPRELA 356


>gi|260173197|ref|ZP_05759609.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. D2]
 gi|315921471|ref|ZP_07917711.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695346|gb|EFS32181.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 516

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 82/275 (29%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      IG          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERIGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL-------------LRYPVDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + +++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQERL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K + +   D K+   R
Sbjct: 400 PNVEVFVSSQTTEVIGNGDKLTGLRIKDRKTEEER 434


>gi|213028058|ref|ZP_03342505.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 345

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 22  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 77

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 78  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 133

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 134 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 182


>gi|330998756|ref|ZP_08322484.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329576253|gb|EGG57769.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 509

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 19/140 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--------CNPAIGGL 53
            + S+DVIV+G G AG  AA  AA  GA+  +I  K S +G  S        C  +    
Sbjct: 37  FDESFDVIVVGSGIAGTMAALSAADKGANVLMIE-KMSRLGGTSRISGLNFACVGSPAQK 95

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL- 112
            KG +    + L   M +V+   G   + L + K  A    R +A      +     +L 
Sbjct: 96  AKG-VKDTSEQLASDMYKVSGNMGDYEKALEMAKNTA----RAEAFMTQRGVKWDGRLLK 150

Query: 113 ----SQENLDVIQGEVAGFN 128
               SQ  + V +G+ AG  
Sbjct: 151 LGGHSQPRVLVSEGDGAGLL 170


>gi|306834332|ref|ZP_07467449.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus bovis
           ATCC 700338]
 gi|304423505|gb|EFM26654.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus bovis
           ATCC 700338]
          Length = 432

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 140/420 (33%), Gaps = 72/420 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YD I+IGGG AG  AA  ++  G  T L          +    A  G G+ ++     
Sbjct: 44  NTYDTIIIGGGPAGMMAAISSSYYGNQTLL----IDKNKRLGKKLAGTGGGRCNVTNNGT 99

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQRE 110
            +D LM      GR   +   QF   ++ +     G   + +       +      +   
Sbjct: 100 -IDDLMEGIPGNGRFLYSVFSQFDNHDIIRFFEENGVALKVEDHGRVFPKTDKSKTIIDA 158

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG--KLK 168
           +  + N      E+ G       + S+   DN      +    T  F+ G + +      
Sbjct: 159 LAHKIN------ELGGTVLTNTEVVSVKKIDNL-FHVKS---ATDEFICGKLIVTTGGKA 208

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+       +   +     F  +   L+      L      +   E Q      +  S+
Sbjct: 209 YPS----TGSTGFGYEIARHFKLNLTELEAAESPLL----TDFPHKELQGISLDDVCLSY 260

Query: 229 MTDKITNRQIECGITRTNLETHRI---IMENIKHS-----AIYSGDIKSY-GPRYCPSIE 279
               IT+  +      +     R+   I      +      + +  I ++   +   S++
Sbjct: 261 QKHYITHDLLFTHFGLSGPAALRLSSFIKGGETITLDLVPKLSTEKIHAFLAEQREKSLK 320

Query: 280 DKI-VRFGERNG---HQIFLEPEGLNTD--VVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           + + V   ER      Q F E     T             LP ++  +       L K  
Sbjct: 321 NALKVLLPERLASFLAQPFPEKVKQLTPQQEKELVDNIKELPIKVTGKM-----SLAKSF 375

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
           + + G       I+ KE+ P TLE+K++ GL+ AG+   IN  TG      A   G VAG
Sbjct: 376 VTKGG-------IDLKEINPKTLESKQVPGLYFAGEVLDINAHTGGFNITVALCTGWVAG 428


>gi|239827942|ref|YP_002950566.1| succinate dehydrogenase flavoprotein subunit [Geobacillus sp.
           WCH70]
 gi|239808235|gb|ACS25300.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. WCH70]
          Length = 585

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 106/616 (17%), Positives = 182/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVAGLVTKYEGWEFLGVVLDDEQICRGIVAQDLKTMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 AFPADAVIMATGGPGVIFGKS--TNSIINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLTSK 418
            A   G+VAG N+ R                       +   ++   S  G     +  K
Sbjct: 394 SAIYGGMVAGPNAVRYIRGLEKSADAMPSSLYDRYVKQEEERWNNILSMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      +   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDKLLKTDEKIQELLERYKNISVTDTSKWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYNRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPAFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     YT ++  
Sbjct: 568 SLIKPRKRDYTKKKEE 583


>gi|262379541|ref|ZP_06072697.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SH164]
 gi|262298998|gb|EEY86911.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SH164]
          Length = 388

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T ++                            +  
Sbjct: 79  FDVLVIGGGPAGNTAAIYAARKGIRTGIVA---------------------------ERF 111

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +    D       + N       +GP+  A  E +    + +I    NL     +VA
Sbjct: 112 GGQVMDTMD-------IENFTSVTKTQGPKFAAAMEEHVREYEVDI---MNL----QKVA 157

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                +  +S    + + + + +   TV+L+TG   R     G        +      D 
Sbjct: 158 SIKGAEETVSGLVEVTLDNGARLESKTVILSTGARWRQMNVPGEQEYATRGVAYCPHCDG 217

Query: 178 P 178
           P
Sbjct: 218 P 218


>gi|330935021|ref|XP_003304801.1| hypothetical protein PTT_17477 [Pyrenophora teres f. teres 0-1]
 gi|311318457|gb|EFQ87120.1| hypothetical protein PTT_17477 [Pyrenophora teres f. teres 0-1]
          Length = 1571

 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +  D  T K   +  R      E R+  + +  D      G      G+ +  R A+  +
Sbjct: 554 LQTDLATEKKESQSMRKKIRDLERRLKAQEEGQDKPPKEPGSGSEDEGDEQSSRQAELEE 613

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP------DFSIQNLFSICP 523
           E  FLR  L++  +T       ++  + D +    Y            +       ++  
Sbjct: 614 EIEFLRERLETTEITVDQWQQEALQKEADNRRMADYIKTMREKNPGGGESGYDEAMTMWK 673

Query: 524 DARKFSSLVIERLQIESSYAAYT-GRQMIEAKEIK 557
           +  +      E+++     A     +   E + ++
Sbjct: 674 EDFEDERARREQVETRCQQAESEAEKLREEVQRLR 708


>gi|212639085|ref|YP_002315605.1| Dehydrogenase (flavoprotein) [Anoxybacillus flavithermus WK1]
 gi|212560565|gb|ACJ33620.1| Dehydrogenase (flavoprotein) [Anoxybacillus flavithermus WK1]
          Length = 431

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------- 53
           ++  +D IV+G G AG   A   AK G +  L                +GG+        
Sbjct: 1   MSEKFDCIVVGAGPAGTACAYELAKAGVNVLL----LERGEYPGAKNVMGGVLYRKMMED 56

Query: 54  ------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRL 105
                  +  L R I     +M     A    ++ L   + P       R + D      
Sbjct: 57  IIPEFYKEAPLERPIVEQRFMMMDKESAVTFSYKGLEWGREPYNNFTVLRAKFD-----Q 111

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
               + + Q  L V +        E   +  +     +  I    VVL  G
Sbjct: 112 WFAEKAVEQGALLVCETVAVECIVENGRVVGVRTDRPDGDIYADVVVLADG 162


>gi|134046277|ref|YP_001097762.1| geranylgeranyl reductase [Methanococcus maripaludis C5]
 gi|209572862|sp|A4FZB4|GGR_METM5 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|132663902|gb|ABO35548.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanococcus maripaludis C5]
          Length = 390

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +N SYDV+V+G G AG  A+  A+K GA T L+         + C
Sbjct: 4  LNNSYDVVVVGAGPAGSMASYNASKNGAKTLLLEKSQEIGTPVRC 48


>gi|160890701|ref|ZP_02071704.1| hypothetical protein BACUNI_03146 [Bacteroides uniformis ATCC 8492]
 gi|317479769|ref|ZP_07938890.1| hypothetical protein HMPREF1007_02006 [Bacteroides sp. 4_1_36]
 gi|156859700|gb|EDO53131.1| hypothetical protein BACUNI_03146 [Bacteroides uniformis ATCC 8492]
 gi|316904062|gb|EFV25895.1| hypothetical protein HMPREF1007_02006 [Bacteroides sp. 4_1_36]
          Length = 626

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 132/398 (33%), Gaps = 79/398 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VREID 63
           SYDVIV GGG AG  AAA A++LG   ALI  +          P +GG     + V    
Sbjct: 183 SYDVIVTGGGIAGMCAAATASRLGCKVALINDR----------PVLGGNNSSEVRVHLGG 232

Query: 64  ALD----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE-ILSQENLD 118
            +       +GR+    G   +  N K  PA            Y    +   I +++N+ 
Sbjct: 233 NIGVGPNSGLGRMIREFG-HSKEGNAK--PAA----------NYEDEKKELFIANEKNIT 279

Query: 119 VIQGE-VAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGT----FLRGVIHIGKLK 168
           +          T+ N I S++++         ++       TG     +L G  +    +
Sbjct: 280 LYANYRAISVKTDGNRIESVIIKHIENGKEVELKAPLFSDCTGDGTIGYLAGADYNMGRE 339

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL------------DGKTIIWDKTEK 216
             A    +          M           G P R             + + +   + + 
Sbjct: 340 SRAEYGEELAPIQPDKMTMGSSVQWYSADKGKPTRFPIFSYGLQFNEKNCEKVTMGEWKW 399

Query: 217 QFADERLIPFSFMTDKITNRQIECGITRTN-LETHRIIMENIKHSAIYSGDIKSY-GPRY 274
           +      + F+ + D    R     +  +N       + +N K+       +    G R 
Sbjct: 400 ETG----MNFNQIDDFERIRDYGLMVIYSNWSFLKNELKDNKKYKNRALDWVAYIAGKRE 455

Query: 275 CPSIE-DKIVRFGERN---GHQIFLEPEGLNTDVVYPNGI-STALPEEIQHQFIRTIPGL 329
              +  D I++  + +    H+        + D+ +P+ + ++  P+       +     
Sbjct: 456 SRRLLGDYILKQDDIDKNVYHEDASFVTTWSIDLHFPDSLNASHFPDAPFKAATK----- 510

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
              +I    YA+ Y           L ++ I  LF+AG
Sbjct: 511 ---HIHIYPYAVPYRC---------LYSRNIENLFMAG 536


>gi|153805832|ref|ZP_01958500.1| hypothetical protein BACCAC_00069 [Bacteroides caccae ATCC 43185]
 gi|149130509|gb|EDM21715.1| hypothetical protein BACCAC_00069 [Bacteroides caccae ATCC 43185]
          Length = 516

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 47/271 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D   +R   + EIL ++ L      
Sbjct: 263 TTGS---ELADNLKTHL-------------LRYPVDLLEHRKIEKVEILGKQKL------ 300

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +            +++ TG   R  +++       GR      +   
Sbjct: 301 -------------VTTSVGEKFLAPALIIATGASWR-RLNVPGEAEYIGRGVAFCPHCDG 346

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  K     G   +G  A +D   I    T  +F DE            +   +E  +
Sbjct: 347 PFYKGKHVAVVGGGNSGIEAAIDLAGICSKVTVFEFMDELKADNVLQERLKSLPNVEVFV 406

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                +T  ++    K +A+   D K+   R
Sbjct: 407 C---SQTTEVVGNGDKLTALRIKDRKTEEER 434


>gi|320101444|ref|YP_004177036.1| thioredoxin reductase (NADPH) [Desulfurococcus mucosus DSM 2162]
 gi|319753796|gb|ADV65554.1| thioredoxin reductase (NADPH) [Desulfurococcus mucosus DSM 2162]
          Length = 335

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +YDVIV+GGG AG  AA  +A+ G  T ++T
Sbjct: 19 ETYDVIVVGGGPAGLTAALYSARYGFKTIVVT 50


>gi|300215277|gb|ADJ79693.1| Thioredoxin reductase [Lactobacillus salivarius CECT 5713]
          Length = 311

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVIVIG G  G  AA  A++     A++                          +
Sbjct: 1   MSDKYDVIVIGAGPGGMTAALYASRANLKVAIL--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   A+       V N     ++ GP    +          E         + 
Sbjct: 35  RGVYGGQMNNTAE-------VENYPGFKSILGPDLAEEMFQSSTQFGAE--------FVY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V     + N I  +   D   +    V++ TG+  R +   G+ K   
Sbjct: 80  GNVEDLTVDDNGIKHVKTDDG-ELEAPVVIIATGSQYRKLGVPGEEKYSG 128


>gi|322516215|ref|ZP_08069147.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125279|gb|EFX96644.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           vestibularis ATCC 49124]
          Length = 393

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 144/421 (34%), Gaps = 71/421 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   +A  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATIASAFYGQQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQREI 111
             D L      GR   +   QF   ++       G + + +       +      + + +
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIIAFFEDNGVKLKVEDHGRVFPKTDKSRTIIQAL 117

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            ++     IQ   A   T   ++S   + +   ++ +  + T+      ++  G    P+
Sbjct: 118 ENK-----IQELGASILTNTEVVSVKKVDEQFQVKSADQIFTSDKL---IVTTGGKSYPS 169

Query: 172 ----GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   D            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHDIA--------RHFKLHVTDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRI-------IMENIKHSAIYSGD-IKSYGPRYCPSIE 279
           +   KIT+  +      +     R+        + ++     +S + +K+Y      + E
Sbjct: 218 YGKHKITHDLLFTHFGLSGPAALRLSSFVKGGEISHLDFLPNHSQENLKTYFEE---NRE 274

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
             +     +N  +  + PE    + +  +   + + +       + I  L+++ I   G 
Sbjct: 275 KSV-----KNTLKGLV-PE-RVAEFLAGDKADSKIKQLHPKDLEKLISQLKEMEIPITGK 327

Query: 340 A------IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
                  +    I+ KE+ P TLE+KK+  L  AG+   IN  TG      A   G +AG
Sbjct: 328 MSLAKSFVTKGGIDLKEINPKTLESKKVPHLHFAGEVLDINAHTGGFNITSALCTGWIAG 387

Query: 387 I 387
           I
Sbjct: 388 I 388


>gi|197286480|ref|YP_002152352.1| oxidoreductase FixC [Proteus mirabilis HI4320]
 gi|194683967|emb|CAR45226.1| FAD-dependent oxidoreductase subunit for carnitine metabolism
           [Proteus mirabilis HI4320]
          Length = 430

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 49/168 (29%), Gaps = 30/168 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSMSCNP 48
           +D I++G G AG  AA V A+ GA                    L  H    I       
Sbjct: 8   FDAIIVGAGLAGSVAALVLAREGAQVLLIERGNYAGGKNVTGGRLYAHTLERIIPEFAQQ 67

Query: 49  AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG-PRTQADRELYRLAM 107
           A       H         G M    D   ++    N     A     R + D+  + +A 
Sbjct: 68  APVERVITHEKLSFMTQTGAM--TIDYQNVETHNPNH----ASWSVLRGEFDQ--WLMAQ 119

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +  +Q    +    V         I  +   D  ++    V+L  G
Sbjct: 120 AEDAGAQCITGIR---VDKLVERDGKIVGVE-ADGDVLEAKAVILADG 163


>gi|227357553|ref|ZP_03841906.1| protein FixC [Proteus mirabilis ATCC 29906]
 gi|227162263|gb|EEI47267.1| protein FixC [Proteus mirabilis ATCC 29906]
          Length = 430

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 18/162 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I++G G AG  AA V A+ GA   L                 GG    H +  I   
Sbjct: 8   FDAIIVGAGLAGSVAALVLAREGAQVLL----IERGNYAGGKNVTGGRLYAHTLERIIPE 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGE- 123
                 V +      ++  + +  A+      A+      A    +  + +  ++ Q E 
Sbjct: 64  FAQQAPV-ERVITHEKLSFMTQTGAMTIDYQNAETHNPNHASWSVLRGEFDQWLMAQAED 122

Query: 124 ----------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                     V         I  +   D  ++    V+L  G
Sbjct: 123 AGAQCITGIRVDKLVERDGKIVGVE-ADGDVLEAKAVILADG 163


>gi|197251386|ref|YP_002145061.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197215089|gb|ACH52486.1| protein FixC [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 428

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|161612407|ref|YP_001586372.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161361771|gb|ABX65539.1| hypothetical protein SPAB_00096 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 428

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|20092690|ref|NP_618765.1| bacteriochlorophyll synthase [Methanosarcina acetivorans C2A]
 gi|19917977|gb|AAM07245.1| bacteriochlorophyll synthase [Methanosarcina acetivorans C2A]
          Length = 396

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 1  MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          MI + SYDVIV+G G +G  AA  +AK GAS  L+  K      + C
Sbjct: 1  MIPKASYDVIVVGAGPSGSTAALHSAKNGASVLLLDKKREIGNPIQC 47


>gi|315298337|gb|EFU57592.1| FAD dependent oxidoreductase [Escherichia coli MS 16-3]
          Length = 454

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLSAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHSGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITESGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              + + +  +++++      I    +V  TG           +            + L 
Sbjct: 132 VIKDGDTLCGVIVENKSGRGAILAKRIVDCTG-------DADIVARAGAPWTKRSKDQLM 184

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 185 GVTVMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|317484343|ref|ZP_07943264.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
 gi|316924421|gb|EFV45586.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
          Length = 628

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIGGG AGCEAA  AA+ G    L 
Sbjct: 371 VVVIGGGPAGCEAALTAAQRGHKVVLF 397


>gi|153801673|ref|ZP_01956259.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122766|gb|EAY41509.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 398

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 125/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATSF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPR 273
           F    ++     QI    T     T  ++ +       + +  A  +  +K       P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSREKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|325969189|ref|YP_004245381.1| geranylgeranyl reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323708392|gb|ADY01879.1| geranylgeranyl reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 458

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 10/156 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DVIV+G G AG  A+ + AK G + ALI  K       +   AIG     H +  +  
Sbjct: 3   NFDVIVVGAGTAGSYASYLLAKAGLNVALIEMKRRDKVFKTTGDAIG----IHHIERMSI 58

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
                       G +    ++     V G     D   +   +  E      + +     
Sbjct: 59  KPPSDVYAIKYEGAELYSPDLSIKYVVLGKGFGLDMAKWAQWLISEAEK-AGVHIFDDHK 117

Query: 124 VAGFNTEKNIISSIVM--QDNSM--IRCSTVVLTTG 155
           V G   E   +S + +   D S    R   V+  +G
Sbjct: 118 VQGPIIENGAVSGVRVLKPDGSAEDFRAKVVIDASG 153


>gi|182677543|ref|YP_001831689.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633426|gb|ACB94200.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 536

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 58/178 (32%), Gaps = 34/178 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-- 64
           DV+V+GGG AG  AA  AA+ GA   L     +  G    + A    G G    E DA  
Sbjct: 19  DVLVLGGGPAGTWAACTAAERGARVIL-----ADKGFCGSSGATAPSGTGVWYIEADAEK 73

Query: 65  ----------LDG------LMGRVADAAGIQFRVLNVKKGP-----AVRGPRTQADRELY 103
                     L G       M RV D       +L  +  P          R       Y
Sbjct: 74  REAAMASREVLGGYLQDRLWMHRVLDRTFDSINLLAARGYPFPIDANGHSRRNSLQGPEY 133

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTG 155
              M+R+      L +          +     +          DN ++R  +V++ TG
Sbjct: 134 MRLMRRQTQEASVLILDHSPALELLVDDTGAVAGATGLRRQRGDNWVVRAKSVIMATG 191


>gi|170741735|ref|YP_001770390.1| electron-transferring-flavoprotein dehydrogenase [Methylobacterium
           sp. 4-46]
 gi|168196009|gb|ACA17956.1| Electron-transferring-flavoprotein dehydrogenase [Methylobacterium
           sp. 4-46]
          Length = 435

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 23/171 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSC 46
           M   ++D IV+G G +G   A   AK G     +                    +  +  
Sbjct: 1   MTVETFDAIVVGAGMSGNACALTLAKRGLKVLQLERGETAGSKNVQGAILYADMLEQLV- 59

Query: 47  NPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
            P         L R +      +       G+ +R  +  +    +  R    R  +   
Sbjct: 60  -PNFREDA--PLERHVLEQRLWIMDGTSHVGMHYRSDDFNE---EKPNRYTIIRTQFDRW 113

Query: 107 MQREILSQENLDVIQGEVAGFNTE-KNIISSIVMQD-NSMIRCSTVVLTTG 155
             R++       + +        +    +  +       ++    VVL  G
Sbjct: 114 FSRQVQEAGATLLCETTATELIRDPSGRVIGVRTDRGGGVVHADVVVLAEG 164


>gi|256424812|ref|YP_003125465.1| HI0933 family protein [Chitinophaga pinensis DSM 2588]
 gi|256039720|gb|ACU63264.1| HI0933 family protein [Chitinophaga pinensis DSM 2588]
          Length = 408

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 149/440 (33%), Gaps = 92/440 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MIN    ++VIGGG AG   A  AA+L   + L          +     + G G+ ++  
Sbjct: 1   MINNR--LVVIGGGAAGFFCAVNAARL--HSQLEVIVIEKSSKLLSKVKVSGGGRCNVTH 56

Query: 61  EIDALDGLMG--------RVADAAGIQFRVLNVKKGPAVRG--PRTQADRELY-----RL 105
             +A D L                   F V +       RG   + +AD  ++       
Sbjct: 57  --NAPDILYMSKRYPRGQHFVKKTFNHFFVPDTISWFKERGVSLKAEADGRMFPVTDNSQ 114

Query: 106 AMQREILSQE---NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +   +L +    N+ +          +      + +QD S ++ S V +  G + +   
Sbjct: 115 TIIDCLLKEADRYNVKIRLNVAVTALEKTEAGWDVQLQDGSSLQASYVCVAAGGYAQADK 174

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF-ADE 221
                 +  G     P  SLF     F+     + +     ++   I    T+ Q     
Sbjct: 175 FAWLKAL--GHQIVVPMPSLF----TFNMPGNPITSLMGVSVEEAHIKIAGTKLQEKGPL 228

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
            +  +      +    +     R   +        +     ++            S+ D+
Sbjct: 229 LITHWGMSGPCVLR--LSAWGARELGDIQYHFTAIVNWLPAFNE----------NSLRDE 276

Query: 282 I--VRF---GERNGH-----------QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           I  +RF   G++  H           Q  L+  G+  D+ + +     +P + QH+ +++
Sbjct: 277 IQGLRFTLGGQKMHHKNPFGLPQRLWQFLLQQSGIGEDIRWAD-----MPAKEQHKLVKS 331

Query: 326 IPGLE---------KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ------IN 370
           +  +E         K   +  G  I+   I+P     T+E+K   GLF AG+      I 
Sbjct: 332 LTAMECGVKGKTTFKEEFVTCG-GIQLSEIDPN----TMESKVAPGLFFAGEVMDVDGIT 386

Query: 371 G--------TTGYEEAAAQG 382
           G        T+G+  A++ G
Sbjct: 387 GGFNFQHAWTSGWIAASSIG 406


>gi|254478673|ref|ZP_05092044.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035360|gb|EEB76063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Carboxydibrachium pacificum DSM 12653]
          Length = 400

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +R IPGLE+     P     G ++ Y  + P+    ++    +  L  AG+
Sbjct: 240 MTPFYPLEKLRKIPGLERARYDDPYSGGKGNSVRYLSMAPR--DNSMRVIGLDNLLCAGE 297

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            +G  TG+ EA   G +AG NS R +  +  +   R  +
Sbjct: 298 KSGLFTGHTEAMVTGCLAGHNSVRVALGMPTLELPRNLA 336


>gi|312863602|ref|ZP_07723840.1| flavoprotein family protein [Streptococcus vestibularis F0396]
 gi|311101138|gb|EFQ59343.1| flavoprotein family protein [Streptococcus vestibularis F0396]
          Length = 393

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 145/421 (34%), Gaps = 71/421 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   +A  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATIASAFYGQQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQREI 111
             D L      GR   +   QF   ++       G + + +       +      + + +
Sbjct: 58  LDDLLAGIPGNGRFLYSIFSQFDNHDIIAFFEDNGVKLKVEDHGRVFPKTDKSRTIIQAL 117

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            ++     IQ   A   T   ++S   + ++  ++ +  + T+      ++  G    P+
Sbjct: 118 ENK-----IQELGASILTNTEVVSVKKVDEHFQVKSADQIFTSDKL---IVTTGGKSYPS 169

Query: 172 ----GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   D            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHDIA--------RHFKLHVTDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRI-------IMENIKHSAIYSGD-IKSYGPRYCPSIE 279
           +   KIT+  +      +     R+        + ++     +S + +K+Y      + E
Sbjct: 218 YGKHKITHDLLFTHFGLSGPAALRLSSFVKGGEISHLDFLPNHSQENLKTYFEE---NRE 274

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGY 339
             +     +N  +  + PE    + +  +   + + +       + I  L+++ I   G 
Sbjct: 275 KSV-----KNALKSLV-PE-RVAEFLAGDKADSKIKQLHPKDLEKLISQLKEMEIPITGK 327

Query: 340 A------IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
                  +    ++ KE+ P TLE+KK+  L  AG+   IN  TG      A   G VAG
Sbjct: 328 MSLAKSFVTKGGVDLKEINPKTLESKKVPHLHFAGEVLDINAHTGGFNITSALCTGWVAG 387

Query: 387 I 387
           I
Sbjct: 388 I 388


>gi|327482987|gb|AEA77394.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae LMA3894-4]
          Length = 395

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 123/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREIL 112
           ++ A + L          ++      F  L  K G A     + Q         +   +L
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDQGQLFCLDSAKEIVDMLL 116

Query: 113 ---SQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDALQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|78044359|ref|YP_361270.1| fixC protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996474|gb|ABB15373.1| fixC protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 431

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 17/168 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
           +   +DV+V+G G +G  AA   A+ G    +                +GG         
Sbjct: 1   MPEKFDVVVVGAGPSGLAAAYKLAEAGLKVIV----IERGEFPGAKNVMGGIIYKKPTEA 56

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQRE 110
           +  EI     +   + +     F     K G + R PR + D       R  +   + ++
Sbjct: 57  VFPEIFKEAPVERPIIEQRY-YFLTDTAKIGFSYRNPRYKEDISGYSVFRAKFDRFLAKK 115

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTGTF 157
           +  +  L + +  V     +   +  ++  +    +    VVL  G  
Sbjct: 116 VQEKGALLITETVVEDLIVKDGKVKGVIAGRKEGEVLADVVVLAEGAH 163


>gi|303257822|ref|ZP_07343832.1| putative flavoCytochrome c flavin subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302859425|gb|EFL82506.1| putative flavoCytochrome c flavin subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 504

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 19/140 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--------CNPAIGGL 53
            + S+DVIV+G G AG  AA  AA  GA+  +I  K S +G  S        C  +    
Sbjct: 32  FDESFDVIVVGSGIAGTMAALSAADKGANVLMIE-KMSRLGGTSRISGLNFACVGSPAQK 90

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL- 112
            KG +    + L   M +V+   G   + L + K  A    R +A      +     +L 
Sbjct: 91  AKG-VKDTPEQLASDMYKVSGNMGDYEKALEMAKNTA----RAEAFMTQRGVKWDGRLLK 145

Query: 113 ----SQENLDVIQGEVAGFN 128
               SQ  + V +G+ AG  
Sbjct: 146 LGGHSQPRVLVSEGDGAGLL 165


>gi|261210205|ref|ZP_05924502.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. RC341]
 gi|260840745|gb|EEX67294.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. RC341]
          Length = 395

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 122/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++  DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 62  IDALDGLMGRV--------ADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
             +    + +         +      F  L  K G A      G     D     + M  
Sbjct: 57  DVSSANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +T  +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISTIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTTAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPRY 274
               ++     QI    T     T  ++ +       N +  A  +  +K       P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T+L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTSL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|88811362|ref|ZP_01126617.1| dihydrolipoamide dehydrogenase [Nitrococcus mobilis Nb-231]
 gi|88791251|gb|EAR22363.1| dihydrolipoamide dehydrogenase [Nitrococcus mobilis Nb-231]
          Length = 473

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + RS+DVIVIG G AG  AA   A+LG +TA+I             PA+GG 
Sbjct: 1  MARSFDVIVIGAGPAGYVAALRCAQLGLNTAVIDEFLDKKAQ----PALGGT 48


>gi|213421660|ref|ZP_03354726.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 217

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|294054040|ref|YP_003547698.1| coagulation factor 5/8 type domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613373|gb|ADE53528.1| coagulation factor 5/8 type domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 1003

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DVIV+G G AG  AA  +A+ GA TAL          +   P IGG            
Sbjct: 418 DFDVIVVGAGIAGINAAISSARTGAKTAL----------IQDRPMIGGNNS--------- 458

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS--QENLDVI-Q 121
               +G +        +    + G      R  A     + +   EI++  ++NL +   
Sbjct: 459 --LELGVIISGPAQHGKPNAREAGLNEEIGREYAYNFHGKWSQGAEIIAAREDNLTIFLN 516

Query: 122 GEVAGFNTEKNIISSIV---MQDN--SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
             V     + + I ++    M D   +       +  TG    G  +    +   GR   
Sbjct: 517 THVNEVERDGHRIKAVKAFNMIDGKRTRYTGRQFIDCTGDGWLG--YYAGAQYRIGREAK 574

Query: 177 SPSN 180
           S  N
Sbjct: 575 SEFN 578


>gi|298674236|ref|YP_003725986.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
 gi|298287224|gb|ADI73190.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
          Length = 410

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 49/155 (31%), Gaps = 21/155 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G G  G  AA  AAK G    LI  +      + C   IG  G  H +  
Sbjct: 1   MKNQYDVIVVGAGPGGSIAAKTAAKNGLDVLLIEKRQEIGDPVRCAEGIGKEGLKHHIEP 60

Query: 62  IDALDGLMGRVADAAGIQFRVLN---------VKKGPAVRGP-RTQADRELYRLAMQREI 111
                      AD  G +    N         +  G       R   DREL   A    +
Sbjct: 61  DPKW-----ICADVKGSRIYSPNETVVEMSEELSGGEVGYVLERKIFDRELVNQAASYGV 115

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMI 145
                  +++    G  +E   +  I  +      
Sbjct: 116 D-----VMVKTRATGLISENGYVRGIKAIYLGEEY 145


>gi|242041655|ref|XP_002468222.1| hypothetical protein SORBIDRAFT_01g042050 [Sorghum bicolor]
 gi|241922076|gb|EER95220.1| hypothetical protein SORBIDRAFT_01g042050 [Sorghum bicolor]
          Length = 529

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 65  DVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 124

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   ++    +               +   M+++  S  N+ +
Sbjct: 125 EEIDAQ-RVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQL 183

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   +  +    +    ++ 
Sbjct: 184 EQGTVTSLLEENGTVKGVQYKTKSGEELKA 213


>gi|121534996|ref|ZP_01666814.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
 gi|121306409|gb|EAX47333.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
          Length = 463

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 147/480 (30%), Gaps = 109/480 (22%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPA 49
           + YDVIVIG G AG       A  G    +I                  + +    C+  
Sbjct: 2   KQYDVIVIGAGPAGIFTGLELAGSGLDVLIIEKGRDISSRRCPKNLMYKTCVNCKPCDIL 61

Query: 50  IG-------GLGKGHLVREIDALDGLMGRVADAA-----------------GIQFRVLNV 85
            G         GK  L  E     G++    + +                 G Q    + 
Sbjct: 62  CGWGGAGAFSDGKLTLTTE---FGGMLDAYIEKSKVSELIHYVDQIYVKFGGPQKVYGDE 118

Query: 86  KKGPAVRGPRTQADREL-YRLAMQREILSQENLDVIQGE---------------VAGFNT 129
            K    R  R  A  +L +  A  R + +  N +++                  V     
Sbjct: 119 NKEEIRRIQRVAAAADLSFVPARIRHLGTDNNFEILSRMREYLSDKCEIRTSTAVESIIV 178

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           E      + +    +I+   +V   G        +G+ +     +  +P +      ++ 
Sbjct: 179 ESGKYVGVELAGGEIIKSKYLVAAPG-REGAEWFVGQAQKLGLSLVTNPVDIG----VRV 233

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQI-------EC 240
           +     ++  T    + K + + K+     D+R+  F      + +T             
Sbjct: 234 ELPAVVMEHITDIVYESKLVYYTKS----FDDRVRTFCMNPYGEVVTENNAGLITVNGHS 289

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGP---------------RYCPSIEDKIVRF 285
             T+    T+  ++ +   +  +   I +YG                +    + D     
Sbjct: 290 YATKKTNNTNFALLVSKSFTEPFKEPI-AYGKSIARLANMLGGGVIVQRLGDLLDGRRST 348

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG------- 338
            ER    + +EP   +     P  +S  LP          +  L+KV    PG       
Sbjct: 349 PERINRGL-VEPTLKDAT---PGDLSLVLPYRHLVAITEMLEALDKVA---PGVNSRHTL 401

Query: 339 -YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKSNK 395
            Y +E  + + + EL   LE+ +I   F  G   G T G  +A+A G+V       +  K
Sbjct: 402 LYGVEVKFYSSRLELNSVLES-QIPNFFAIGDGAGVTRGLAQASAAGVVVAREIMAREGK 460


>gi|326387617|ref|ZP_08209223.1| succinate dehydrogenase flavoprotein subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207663|gb|EGD58474.1| succinate dehydrogenase flavoprotein subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 601

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 74/221 (33%), Gaps = 52/221 (23%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----------IGSMSCNPAI 50
           +I+ +YD +V+G G +G  A   +A+ G  TA IT    T          I +  CN   
Sbjct: 7   IIDHTYDTVVVGAGGSGLRATMGSAQAGLRTACITKVFPTRSHTVAAQGGIAASLCNNTP 66

Query: 51  G-------GLGKGH------------------LVREIDALDGLMGRVADAAGIQF----R 81
                      KG                    V E++       R AD    Q      
Sbjct: 67  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVYELEHAGVPFSRNADGTIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-----DVIQGEVAGFNTEKNIISS 136
           + N+  GP V+     ADR  +  AM   +  Q++L       I+        E  +   
Sbjct: 127 MQNMGDGPPVQRTCAAADRTGH--AMLHAL-YQQSLKYDADFFIEYFAIDLIMENGVCRG 183

Query: 137 IV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           ++   + D S+   R   VVL TG + R            G
Sbjct: 184 VIALCLDDGSIHRFRSHAVVLATGGYGRCYYTATSAHTCTG 224


>gi|229524982|ref|ZP_04414387.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae bv. albensis
           VL426]
 gi|229527172|ref|ZP_04416566.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae 12129(1)]
 gi|229335403|gb|EEO00886.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae 12129(1)]
 gi|229338563|gb|EEO03580.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae bv. albensis
           VL426]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 122/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDALQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|226327347|ref|ZP_03802865.1| hypothetical protein PROPEN_01215 [Proteus penneri ATCC 35198]
 gi|225204565|gb|EEG86919.1| hypothetical protein PROPEN_01215 [Proteus penneri ATCC 35198]
          Length = 321

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 18/162 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I++G G AG  AA V A+ GA   L                 GG    H +  I   
Sbjct: 8   FDAIIVGAGLAGSVAALVLAREGAQVLL----IERGNYAGGKNVTGGRLYAHTLERIIPE 63

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-- 123
                 V +      ++  + +  A+      A+    + A    +  + +  +++    
Sbjct: 64  FAQEAPV-ERVITHEKLSFMTETGAMTIDYQNAEENNPKTASWSVLRGEFDQWLMEQAEN 122

Query: 124 ----------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                     V         I  +   D  ++    V+L  G
Sbjct: 123 AGAQCITGIRVDKLVERDGKIVGVE-ADGDVLEAKAVILADG 163


>gi|222080928|ref|YP_002540291.1| D-Octopine oxidase [Agrobacterium radiobacter K84]
 gi|221725607|gb|ACM28696.1| D-Octopine oxidase [Agrobacterium radiobacter K84]
          Length = 593

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGKGHLV 59
           ++ + DV+VIG G AG EAA  AA  G    L+    +  G +   P     GL      
Sbjct: 119 MSDTCDVLVIGAGPAGTEAALSAAACGLRVVLVDEAPAAGGQVYRAPPSTFAGLPATPES 178

Query: 60  REIDALDGLMGRVA-DAAGIQ--------FRVLNVKK-GPAVRGPR 95
           R  DAL   +     DA             RV  + K GP     R
Sbjct: 179 RTGDALRRRLAESTVDAHFGHTVWSVSPDLRVDALAKDGPVSWSAR 224


>gi|323475901|gb|ADX86507.1| FAD dependent oxidoreductase [Sulfolobus islandicus REY15A]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAT-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|229585939|ref|YP_002844441.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.16.27]
 gi|238620913|ref|YP_002915739.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.16.4]
 gi|228020989|gb|ACP56396.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.16.27]
 gi|238381983|gb|ACR43071.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.16.4]
 gi|323478523|gb|ADX83761.1| FAD dependent oxidoreductase [Sulfolobus islandicus HVE10/4]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAT-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|227828721|ref|YP_002830501.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.14.25]
 gi|227460517|gb|ACP39203.1| FAD dependent oxidoreductase [Sulfolobus islandicus M.14.25]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAT-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|169351683|ref|ZP_02868621.1| hypothetical protein CLOSPI_02464 [Clostridium spiroforme DSM 1552]
 gi|169291905|gb|EDS74038.1| hypothetical protein CLOSPI_02464 [Clostridium spiroforme DSM 1552]
          Length = 472

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 80/494 (16%), Positives = 131/494 (26%), Gaps = 139/494 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAA--AVAAKLGASTALI-----THK--------------TST 40
           +N++YDV+V+G G AG  A       +      LI                         
Sbjct: 1   MNKNYDVVVVGAGPAGIMACYELYLKQPELKVLLIDKGQDVMNRHCPIKEKKIKSCPIIK 60

Query: 41  IGSMSCNPA------IGG-----LGKGHLVREIDALDGLM--GRVADAAGIQFRV---LN 84
                C PA       GG      GK ++  E     G +      D      +    L 
Sbjct: 61  NNEPGCLPACSITAGFGGAGAYSDGKFNITSE---FGGWLTDYLSTDEVEDIIQYVDNLY 117

Query: 85  VKKGPAVRGPRTQADREL------YR------LAMQREILSQENLDVIQGE--------- 123
           +K G          D+        Y        A  R + ++ENL ++            
Sbjct: 118 LKHGATKEITDPTTDKVKEIEHRGYAVGLKLLRAKVRHLGTEENLRIMTEMSTKLKEHID 177

Query: 124 ------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                 V     E N    +++++  +I    VVL  G                      
Sbjct: 178 MLFKTAVKEVLVEDNHAKGVILENGEVINAKKVVLAPGRDGSA----------------- 220

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
               L     K   +    +     R++   I     E+         F + T   T  +
Sbjct: 221 ---WLTKVLKKHGLELYNNQVDIGVRVETSNI---VMEEINNSLYEGKFIYNTSVGTKVR 274

Query: 238 IEC-----GITRTNLETHRIIMENIKHSAIYSGD----------IKSYGPRYCPSIEDKI 282
             C      +   N     +   +  H                   S           ++
Sbjct: 275 TFCSNPSGHVVIENHSGTMLANGHAYHDPKLGSKNTNFALLVSHTFSEPFNEPNEFAHEV 334

Query: 283 VRFGER--NGHQIFLE----PEGLNTDVVY--------------PNGISTALPEEIQHQF 322
            R   +  NG  +         G  T                  P  +   LP       
Sbjct: 335 SRLANKLSNGSVMVQRYGDIKRGRRTTEKRLKEGYTVPTLKEAVPGDLGLVLPYNTMKSI 394

Query: 323 IRTIPGLEKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-T 372
           I  I  L+KV    PG        Y +E  + + + ++    E  +I  L++AG   G T
Sbjct: 395 IEMIEALDKVT---PGIANEHTLLYGVEAKFYSARPKVREGFE-CEIDDLYVAGDGAGLT 450

Query: 373 TGYEEAAAQGLVAG 386
            G  +A A G++  
Sbjct: 451 RGLAQAGANGIIVA 464


>gi|229580392|ref|YP_002838792.1| FAD dependent oxidoreductase [Sulfolobus islandicus Y.G.57.14]
 gi|229580974|ref|YP_002839373.1| FAD dependent oxidoreductase [Sulfolobus islandicus Y.N.15.51]
 gi|228011108|gb|ACP46870.1| FAD dependent oxidoreductase [Sulfolobus islandicus Y.G.57.14]
 gi|228011690|gb|ACP47451.1| FAD dependent oxidoreductase [Sulfolobus islandicus Y.N.15.51]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAT-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|333010534|gb|EGK29967.1| protein fixC [Shigella flexneri VA-6]
          Length = 428

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     N  +    +      R++ D     
Sbjct: 57  HIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSLSQRSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  +I   TV+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVLLADG 161


>gi|322390295|ref|ZP_08063824.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           parasanguinis ATCC 903]
 gi|321143026|gb|EFX38475.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           parasanguinis ATCC 903]
          Length = 390

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 125/412 (30%), Gaps = 58/412 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +  IVIGGG AG  A   +A  G  T LI         +    A  G G+ ++      
Sbjct: 3   HFHTIVIGGGPAGMMATIASASYGQPTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT- 57

Query: 65  LDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----RLAMQREILSQ 114
           LD LM      GR   +   QF   ++ +     G + + +            +  I + 
Sbjct: 58  LDDLMAGIPGNGRFLYSVFSQFDNHDIIQFFTDNGVKLKVEDHGRVFPASDQSRTIIQAL 117

Query: 115 EN--LDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           EN  L++   I       +  K     IV           +++TTG              
Sbjct: 118 ENKILELGASIATNCEVVSVTKPEDVFIVKSAEKTWTADKLIVTTGGKSYPSTGSTGYGH 177

Query: 170 PAGRMGDSPSNSLFNS----FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADERL 223
              R       +L  +       F      G   T      D   I  D     F     
Sbjct: 178 DIARHFKHTITALEAAESPLLTDFPHKALQGISLTDVTLSYDKHMITHDLLFTHFGLSGP 237

Query: 224 IPFSFMTDKITNRQIECGITRTN--LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                 +       +   +  T    E    + E  + +   S             + D 
Sbjct: 238 AALRMSSFVKGGEILSLDLLPTTSSQELKDFLEEYREKAIKNSLKTLL-----PERLADF 292

Query: 282 IVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           + + F E+       +    N        I   LP  +  +       L K  + + G +
Sbjct: 293 LAQGFPEK------AKQLTPNQTEELIQKIK-ELPIPVTGKM-----SLAKSFVTKGGVS 340

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           ++   INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 341 LKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|306815486|ref|ZP_07449635.1| putative dihydrolipoamide dehydrogenase [Escherichia coli NC101]
 gi|305851148|gb|EFM51603.1| putative dihydrolipoamide dehydrogenase [Escherichia coli NC101]
          Length = 454

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 73/237 (30%), Gaps = 15/237 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLTAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITEAGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              E   +  +++++      I    +V  TG      I          R  D     + 
Sbjct: 132 VIKEGGTLCGVIVENKSGRGAILAKRIVDCTG---DADIAARAGAPWTKRGKDQ-LMGVT 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
             F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 188 VMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|297581887|ref|ZP_06943808.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297533981|gb|EFH72821.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 398

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 123/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|18313743|ref|NP_560410.1| hypothetical protein PAE2989 [Pyrobaculum aerophilum str. IM2]
 gi|18161299|gb|AAL64592.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 358

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 65/207 (31%), Gaps = 33/207 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+++G G AG  AA +A +LG  T +       +      P  GGL      + ++AL
Sbjct: 2   YDVVIVGAGPAGSTAALIATRLGLRTVV----IDRLAPPREKPCGGGLTP-RSWKLLNAL 56

Query: 66  D------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                  G    +   A      L  KK P +   R   D           IL Q N + 
Sbjct: 57  GIDYPVYGACNEIETRAAGYKIAL--KKEPILVTRRPDFD---------YAILKQSNAEF 105

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+ +V G     N +       N       ++   G        IG       R      
Sbjct: 106 IRDQVLG--VRGNTVVG----RNGEYSGRVIIGADGATSTVARSIGINNFRGERSHAIAY 159

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDG 206
            ++          + +      A ++ 
Sbjct: 160 MTIAK-----GPPSDKCVIDFDAVINA 181


>gi|331650452|ref|ZP_08351524.1| invasion protein IbeA [Escherichia coli M605]
 gi|330909767|gb|EGH38277.1| putative dihydrolipoamide dehydrogenase [Escherichia coli AA86]
 gi|331040846|gb|EGI13004.1| invasion protein IbeA [Escherichia coli M605]
          Length = 454

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLSAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITESGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              + + +  +++++      I    +V  TG           +            + L 
Sbjct: 132 VIKDGDTLCGVIVENKSGRGAILAKRIVDCTG-------DADIVARAGAPWTKRSKDQLM 184

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 185 GVTVMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|52420916|emb|CAH55795.1| putative dihydrolipoamide dehydrogenase CdlD [Escherichia coli]
          Length = 454

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLSAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITESGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              + + +  +++++      I    +V  TG           +            + L 
Sbjct: 132 VIKDGDTLCGVIVENKSGRGAILAKRIVDCTG-------DADIVARAGAPWTKRSKDQLM 184

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 185 GVTVMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|306834259|ref|ZP_07467378.1| alkyl hydroperoxide reductase [Streptococcus bovis ATCC 700338]
 gi|304423608|gb|EFM26755.1| alkyl hydroperoxide reductase [Streptococcus bovis ATCC 700338]
          Length = 512

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 63/264 (23%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T L+                            +  
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGIKTGLLA---------------------------ETF 241

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N+   P + GP   +  E +  +         ++D+++ +  
Sbjct: 242 GGQVMETV-------GIENMIGTPYIEGPVLMSQVEEHTKSY--------DVDIMKAQ-K 285

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSP-- 178
                K  +  + + + ++++  T +L+ G   R     G +      +      D P  
Sbjct: 286 AIAIHKKDVIEVTLANGAILKSKTAILSLGAKWRNINVPGEVEFRNKGVTYCPHCDGPLF 345

Query: 179 -----------SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                      ++ L  +       +          L    ++ D+ E    D   I  +
Sbjct: 346 TDKKVAVIGGGNSGLEAAIDLAGLASHVYILEFLPELKADKVLQDRAEAH--DNITILKN 403

Query: 228 FMTDKITNRQIECGITRTNLETHR 251
             T +I   +   G+  T+ ET  
Sbjct: 404 VATKEILGDEQVTGLIYTDRETGE 427


>gi|153829098|ref|ZP_01981765.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148875426|gb|EDL73561.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 398

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 125/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPR 273
           F    ++     QI    T     T  ++ +       + +  A  +  +K       P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSREKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|118467508|ref|YP_886656.1| geranylgeranyl reductase [Mycobacterium smegmatis str. MC2 155]
 gi|118469401|ref|YP_885427.1| geranylgeranyl reductase [Mycobacterium smegmatis str. MC2 155]
 gi|118168795|gb|ABK69691.1| geranylgeranyl reductase [Mycobacterium smegmatis str. MC2 155]
 gi|118170688|gb|ABK71584.1| geranylgeranyl reductase [Mycobacterium smegmatis str. MC2 155]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD+++ GGG +G  AA  AA+ GA   ++  K        C   +      +L + 
Sbjct: 1   MTQRYDLVIAGGGPSGSAAAWQAAQTGAKVVVLD-KAEFPRDKPCGDGLTARAVSYLQK- 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE----LYRLAMQREILSQENL 117
                  MG +AD      RV N     +         R      +   + R  L    L
Sbjct: 59  -------MG-LADEVATYHRV-NRVTVFSPSEWELSFPRRPGMPDHGHTVSRTHLDTVLL 109

Query: 118 --------DVIQG-EVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTF 157
                   +V QG EVAG   +    +  +V++    +    V+   G +
Sbjct: 110 KHAESAGAEVRQGAEVAGPEFDANGRVIGVVLKSGEKVYGDAVIAADGAY 159


>gi|284999005|ref|YP_003420773.1| FAD dependent oxidoreductase [Sulfolobus islandicus L.D.8.5]
 gi|284446901|gb|ADB88403.1| FAD dependent oxidoreductase [Sulfolobus islandicus L.D.8.5]
          Length = 395

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAS-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|124486209|ref|YP_001030825.1| excinuclease ABC subunit C [Methanocorpusculum labreanum Z]
 gi|124363750|gb|ABN07558.1| geranylgeranyl reductase [Methanocorpusculum labreanum Z]
          Length = 382

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 31/202 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGG-----LGKG 56
           DVIVIGGG AG  AA + AK G ST ++    S    + C     N A            
Sbjct: 3   DVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRSVY 62

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + VR                       + K   A    R + D E+   A +        
Sbjct: 63  NTVRGAKICGSE---------GHSLSFDAKTTKAYVVDRGRLDHEIAVRAAEAGAE---- 109

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT---FLRGVIHIGKLKIPAGR 173
              ++  V   N EK II          I  + ++   G      R +       I +G 
Sbjct: 110 -FSLKTCVTKLNPEKKIIH---TAGGEEIPYTILIAADGPRSVAARSLGIPPSSYIYSGI 165

Query: 174 MGDSPSNSLFNSFMKFDFDTGR 195
             + P +   +S ++   +   
Sbjct: 166 QAEVPWDG-DSSLVELHPNAAP 186


>gi|315648545|ref|ZP_07901644.1| hypothetical protein PVOR_24959 [Paenibacillus vortex V453]
 gi|315276239|gb|EFU39585.1| hypothetical protein PVOR_24959 [Paenibacillus vortex V453]
          Length = 478

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 146/493 (29%), Gaps = 125/493 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAA------------------KLGA-----STALITHKTSTI 41
            YDVIV+G G AG  A                       +           L        
Sbjct: 3   KYDVIVVGAGPAGIFACYELTLKSPGSKVLLVDKGHDIYRRSCPILEEKIKLCPPAIGRK 62

Query: 42  GSMSCNPA------IGG-----LGKGHLVREIDALDGLM-----GRVADAAGIQFRVLNV 85
               C PA       GG      GK ++  E     G M     G            +N+
Sbjct: 63  EFAGCLPACSITAGFGGAGAYSDGKFNITTE---FGGWMTDYLPGSKVMELIQYVDAINL 119

Query: 86  KKG--PAVRGPRTQADREL----YR------LAMQREILSQENLDV-------------- 119
           + G  PA+  P T A R++    Y        A  R + +++NL++              
Sbjct: 120 EHGATPAITDPTTNAIRDIEQRGYAAGLKLLRAQVRHLGTEQNLEILKSIYEYLKTRVDM 179

Query: 120 -IQGEVAGFNTEK----NIISSIVMQDNSMIRCSTVVLTTGTFLRG---------VIHIG 165
             + EV    T K      ++ I M+   +   + V++  G               + + 
Sbjct: 180 AFRAEVEDLVTVKEDGTYRVTGIAMKGGEVHEANLVMVAPGRDGSAWLTSILKKRRLKMH 239

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             ++  G   ++    +               T    R+  +T   + +     +     
Sbjct: 240 NNQVDVGVRVETSDVVMREINEHLYEGKFIFNTSVGTRV--RTFCSNPSGHVVVENHSGV 297

Query: 226 FSFMTDKITNRQIECGIT---------RTNL-----ETHRIIMENIKHSAIYSGDIKSYG 271
            +       +  +    T          T       E  R I +     +     ++ YG
Sbjct: 298 MAANGHSYKDPALGSANTNFALLVSHKFTEPFDKPNEYAREICKRANDLSSGGVIVQKYG 357

Query: 272 --PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
              R   S E +I         + FLEP         P  +   LP       I  +  L
Sbjct: 358 DVLRGRRSTEGRI--------REGFLEPT---LKEAVPGDLGLVLPYNTMKSLIEMVEAL 406

Query: 330 EKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-TTGYEEAA 379
           +KV    PG        Y +E  + + + +L  + ET +I GLF  G   G T G  +A 
Sbjct: 407 DKVT---PGIASEHTLFYGVEAKFYSARPKLTESFET-EIKGLFCGGDGAGITRGLAQAG 462

Query: 380 AQGLVAGINSARK 392
           A G+    N   +
Sbjct: 463 AAGIWIAQNMLNR 475


>gi|289808215|ref|ZP_06538844.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|225182132|ref|ZP_03735558.1| L-aspartate oxidase [Dethiobacter alkaliphilus AHT 1]
 gi|225167175|gb|EEG76000.1| L-aspartate oxidase [Dethiobacter alkaliphilus AHT 1]
          Length = 525

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 59/185 (31%), Gaps = 37/185 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTST-IGSMSCNPAIGGLGKGHLV 59
            YD+IV+G G AG  AA  AA+  A   L+T      T+T +       A+G        
Sbjct: 11  EYDIIVVGSGIAGLYAALSAAEF-ARVCLVTKGKLQDTNTWLAQGGIAAAVGDDDSPRQH 69

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVR-GPRTQADRELYRLAMQREILSQEN-- 116
            E     G+   + D A +   V    +  A      T  DR    LA+ RE     N  
Sbjct: 70  LEDTLAAGV--DICDPAAVAVMVEEGPRRVAELMSLGTPFDRIDGSLALTREGAHHHNRV 127

Query: 117 -------------------------LDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTV 150
                                    + + Q   V      +  +  I       IR   V
Sbjct: 128 LHCGGDATGRLIQETMQSTLLKSKSVTIRQHVFVTELLQHEGTVCGIRTVTGEEIRAGAV 187

Query: 151 VLTTG 155
           +L TG
Sbjct: 188 ILATG 192


>gi|270295795|ref|ZP_06201995.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273199|gb|EFA19061.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 720

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 131/398 (32%), Gaps = 79/398 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VREID 63
           SYDVIV GGG AG  AAA A++LG   ALI  +          P +GG     + V    
Sbjct: 277 SYDVIVTGGGIAGMCAAATASRLGCKVALINDR----------PVLGGNNSSEVRVHLGG 326

Query: 64  ALD----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE-ILSQENLD 118
            +       +GR+    G   +  N K  PA            Y    +   I +++N+ 
Sbjct: 327 NIGVGPNSGLGRMIREFG-HSKEGNAK--PAA----------NYEDEKKELFIANEKNIT 373

Query: 119 VIQGE-VAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGT----FLRGVIHIGKLK 168
           +          T+ N I S++++         ++       TG     +L G  +    +
Sbjct: 374 LYANYRAISVKTDGNRIESVIIKHIENGKEVELKAPLFSDCTGDGTIGYLAGADYNMGRE 433

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL------------DGKTIIWDKTEK 216
                  +          M           G P R             + + +   + + 
Sbjct: 434 SRTEYGEELAPIQPDKMTMGSSVQWYSADKGKPTRFPIFSYGLQFNEKNCEKVTMGEWKW 493

Query: 217 QFADERLIPFSFMTDKITNRQIECGITRTN-LETHRIIMENIKHSAIYSGDIKSY-GPRY 274
           +      + F+ + D    R     +  +N       + +N K+       +    G R 
Sbjct: 494 ETG----MNFNQIDDFERIRDYGLMVIYSNWSFLKNELKDNKKYKNRALDWVAYIAGKRE 549

Query: 275 CPSIE-DKIVRFGERN---GHQIFLEPEGLNTDVVYPNGI-STALPEEIQHQFIRTIPGL 329
              +  D I++  + +    H+        + D+ +P+ + ++  P+       +     
Sbjct: 550 SRRLLGDYILKQDDIDKNVYHEDASFVTTWSIDLHFPDSLNASHFPDAPFKAATK----- 604

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
              +I    YA+ Y           L ++ I  LF+AG
Sbjct: 605 ---HIHIYPYAVPYRC---------LYSRNIENLFMAG 630


>gi|218680601|ref|ZP_03528498.1| tRNA (uracil-5-)-methyltransferase Gid [Rhizobium etli CIAT 894]
          Length = 146

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 22/155 (14%)

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+     L+   AD                  G     DR+ +  A+ R I     + V+
Sbjct: 9   EMRMAGSLIMATADRH------------QVPAGGALAVDRDGFSEAVTRAIHDHPLITVV 56

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           + EV G       ++ +              LT  +    +         A     +P  
Sbjct: 57  REEVTGLPPRDWDLAIVAT----------GPLTAPSLASAIQAQTGEDSLAVFDAIAPIV 106

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
              +  M   +   R     P       I     E
Sbjct: 107 YRESIDMDICWYQSRYDKVGPGGTGKDYISCPMDE 141


>gi|153214623|ref|ZP_01949499.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124115229|gb|EAY34049.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 398

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 125/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L+ H             I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLLLEHAK----KPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|156937702|ref|YP_001435498.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ignicoccus hospitalis KIN4/I]
 gi|156566686|gb|ABU82091.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ignicoccus hospitalis KIN4/I]
          Length = 328

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 50/167 (29%), Gaps = 39/167 (23%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIG G  G  AA  AA+LG  T ++       G  S  P +           ID 
Sbjct: 15  EFDVVVIGAGPGGLTAAMYAARLGLKTVVLEKDNKPGGRTSLAPVVEDYP------GIDK 68

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G    +A     Q       K  A                            V    V
Sbjct: 69  IGGE--ELAQRFLNQ-----ATKFGAQV--------------------------VFGERV 95

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              +  K  +  +        +   V++ TG   +G+   G+ +   
Sbjct: 96  VDADFSKEEMKVVRTHKGREYKAPAVIIATGVSTKGLGVKGEKEYFG 142


>gi|306832145|ref|ZP_07465299.1| alkyl hydroperoxide reductase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425584|gb|EFM28702.1| alkyl hydroperoxide reductase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 512

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 63/263 (23%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T L+                            +  
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGIKTGLLA---------------------------ETF 241

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N+   P + GP   +  E +  +         ++D+++ +  
Sbjct: 242 GGQVMETV-------GIENMIGTPYIEGPALMSQVEEHTKSY--------DVDIMKAQ-K 285

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSP-- 178
                K  +  + + + ++++  T +L+ G   R     G +      +      D P  
Sbjct: 286 AIAIHKKDVIEVTLANGAILKSKTAILSLGAKWRNINVPGEVEFRNKGVTYCPHCDGPLF 345

Query: 179 -----------SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                      ++ L  +       +          L    ++ D+ E    D   I  +
Sbjct: 346 TDKKVAVIGGGNSGLEAAIDLAGLASHVYILEFLPELKADKVLQDRAEAH--DNITILKN 403

Query: 228 FMTDKITNRQIECGITRTNLETH 250
             T +I   +   G+  T+ ET 
Sbjct: 404 VATKEILGDEQVTGLIYTDRETD 426


>gi|288906106|ref|YP_003431328.1| NADH oxidase/alkyl hydroperoxidase [Streptococcus gallolyticus
           UCN34]
 gi|288732832|emb|CBI14408.1| putative NADH oxidase/alkyl hydroperoxidase [Streptococcus
           gallolyticus UCN34]
          Length = 512

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 63/263 (23%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T L+                            +  
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGIKTGLLA---------------------------ETF 241

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N+   P + GP   +  E +  +         ++D+++ +  
Sbjct: 242 GGQVMETV-------GIENMIGTPYIEGPALMSQVEEHTKSY--------DVDIMKAQ-K 285

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSP-- 178
                K  +  + + + ++++  T +L+ G   R     G +      +      D P  
Sbjct: 286 AIAIHKKDVIEVTLANGAILKSKTAILSLGAKWRNINVPGEVEFRNKGVTYCPHCDGPLF 345

Query: 179 -----------SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                      ++ L  +       +          L    ++ D+ E    D   I  +
Sbjct: 346 TDKKVAVIGGGNSGLEAAIDLAGLASHVYILEFLPELKADKVLQDRAEAH--DNITILKN 403

Query: 228 FMTDKITNRQIECGITRTNLETH 250
             T +I   +   G+  T+ ET 
Sbjct: 404 VATKEILGDEQVTGLIYTDRETD 426


>gi|285018446|ref|YP_003376157.1| dihydrolipoamide dehydrogenase [Xanthomonas albilineans GPE PC73]
 gi|283473664|emb|CBA16167.1| probable dihydrolipoamide dehydrogenase protein [Xanthomonas
          albilineans]
          Length = 479

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          M  + +DV+VIG G AG  AA  AA+LG  TA I       G     PA+GG 
Sbjct: 1  MSEQHFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDG----KPALGGT 49


>gi|89099644|ref|ZP_01172518.1| hypothetical protein B14911_24050 [Bacillus sp. NRRL B-14911]
 gi|89085587|gb|EAR64714.1| hypothetical protein B14911_24050 [Bacillus sp. NRRL B-14911]
          Length = 432

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + YDVIVIGGG +G  A+  AA+      L          +    AI G G+ ++  
Sbjct: 12 EKMYDVIVIGGGPSGLMASIAAAEKRMKVLL----IDKGNKLGRKLAISGGGRCNVTN 65


>gi|325979123|ref|YP_004288839.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325179051|emb|CBZ49095.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 390

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 138/420 (32%), Gaps = 72/420 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   NTYDTIIIGGGPAGMMAAISSSYYGNQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQRE 110
            +D LM      GR   +   QF   ++ +     G   + +       +      +   
Sbjct: 58  -IDDLMEGIPGNGRFLYSVFSQFDNHDIIRFFEENGVALKVEDHGRVFPKTDKSKTIIDA 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG--KLK 168
           +  + N      E+ G       + S+   DN      +    T  F+ G + +      
Sbjct: 117 LAHKIN------ELGGTVLTNTEVVSVKKIDNL-FHVKS---ATDEFICGKLIVTTGGKA 166

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+       +   +     F  +   L+      L      +   E Q      +  S+
Sbjct: 167 YPS----TGSTGFGYEIARHFKLNLTELEAAESPLL----TDFPHKELQGISLDDVCLSY 218

Query: 229 MTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKS------YGPRYCPSIE 279
               IT+  +      +     R+   I      +      + +         +   S++
Sbjct: 219 QKHHITHDLLFTHFGLSGPAALRLSSFIKGGETITLDLIPKLSTEELHTFLAEQREKSLK 278

Query: 280 DKI-VRFGERNG---HQIFLEPEGLNTD--VVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           + + V   ER      Q F E     T             LP ++  +       L K  
Sbjct: 279 NALKVLLPERLASFLAQPFPEKVKQLTPQQEKELVDNIKELPIKVTGKM-----SLAKSF 333

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
           + + G       +N KE+ P TLE+K++ GL+ AG+   IN  TG      A   G VAG
Sbjct: 334 VTKGG-------VNLKEINPQTLESKQVPGLYFAGEVLDINAHTGGFNITVALCTGWVAG 386


>gi|315222743|ref|ZP_07864631.1| conserved hypothetical protein TIGR00275 [Streptococcus anginosus
           F0211]
 gi|315188156|gb|EFU21883.1| conserved hypothetical protein TIGR00275 [Streptococcus anginosus
           F0211]
          Length = 390

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 135/417 (32%), Gaps = 66/417 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D IVIGGG AG  AA  ++  G  T L+         +    A  G G+ ++     
Sbjct: 2   NHFDTIVIGGGPAGMMAAISSSFHGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNDT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQ 108
             D L      GR   +   QF   ++       G + +           D+    +   
Sbjct: 58  LEDLLAGIPGNGRFLYSVFSQFDNHDIMNFFTENGVKLKVEDHGRVFPTTDKSSTIIEAL 117

Query: 109 REILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            + + +    +  Q EV     +KN    I+     +     +++TTG            
Sbjct: 118 EQKIKELGATIKTQTEVVS--VKKNADCFIIKSSEHIWSSDRLIVTTGGKSYPSTGSTGF 175

Query: 168 KIPAGRMGDSPSNSLFNS----FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADE 221
                R  +     L  +       F      G        R +   I  D     F   
Sbjct: 176 GYEIARHFNHTITELEAAESPLLTDFPHKALQGIALANVTLRYNKHIITHDLLFTHFGLS 235

Query: 222 RLIP-----FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
                    F    + I    +     + + E     +EN +  ++ +   +    R   
Sbjct: 236 GPAALRMSSFLKGGETIYLDVLP----QFSAEDLAAFLENNREKSLKNSLKQLLPER--- 288

Query: 277 SIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
            + D   + F E+       E E L   +        ALP  I  +       L K  + 
Sbjct: 289 -LADFFAQPFPEKGKQLTGKEKEELIQQLK-------ALPIPITGKM-----SLAKSFVT 335

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
           + G +++   INPK    TLE+K +SGL+ AG+   IN  TG      A   G VAG
Sbjct: 336 KGGVSLKE--INPK----TLESKLVSGLYFAGEVLDINAHTGGFNITVALCTGWVAG 386


>gi|306832204|ref|ZP_07465358.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304425643|gb|EFM28761.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 390

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 138/420 (32%), Gaps = 72/420 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   NTYDTIIIGGGPAGMMAAISSSYYGNQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD-------RELYRLAMQRE 110
            +D LM      GR   +   QF   ++ +     G   + +       +      +   
Sbjct: 58  -IDDLMEGIPGNGRFLYSVFSQFDNHDIIRFFEENGVALKVEDHGRVFPKTDKSKTIIDA 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG--KLK 168
           +  + N      E+ G       + S+   DN      +    T  F+ G + +      
Sbjct: 117 LAHKIN------ELGGTVLTNTEVVSVKKIDNL-FHVKS---ATDEFICGKLIVTTGGKA 166

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P+       +   +     F  +   L+      L      +   E Q      +  S+
Sbjct: 167 YPS----TGSTGFGYEIARHFKLNLTELEAAESPLL----TDFPHKELQGISLDDVCLSY 218

Query: 229 MTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKS------YGPRYCPSIE 279
               IT+  +      +     R+   I      +      + +         +   S++
Sbjct: 219 QKHHITHDLLFTHFGLSGPAALRLSSFIKGGETITLDLIPKLSTEELHTFLAEQREKSLK 278

Query: 280 DKI-VRFGERNG---HQIFLEPEGLNTD--VVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
           + + V   ER      Q F E     T             LP ++  +       L K  
Sbjct: 279 NALKVLLPERLASFLAQPFPEKVKQLTPQQEKELVDNIKELPIKVTGKM-----SLAKSF 333

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTGYEE---AAAQGLVAG 386
           + + G       +N KE+ P TLE+K++ GL+ AG+   IN  TG      A   G VAG
Sbjct: 334 VTKGG-------VNLKEINPKTLESKQVPGLYFAGEVLDINAHTGGFNITVALCTGWVAG 386


>gi|227831465|ref|YP_002833245.1| FAD dependent oxidoreductase [Sulfolobus islandicus L.S.2.15]
 gi|227457913|gb|ACP36600.1| FAD dependent oxidoreductase [Sulfolobus islandicus L.S.2.15]
          Length = 395

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D ++   ++   I     NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVDLILLSNSNRTRISV---NVESNLAS-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N    +       +R   VVL  G
Sbjct: 113 LLITKTTVLGVKREGNEYK-VETDRG-EVRADRVVLAEG 149


>gi|307318181|ref|ZP_07597617.1| glucose-inhibited division protein A [Sinorhizobium meliloti AK83]
 gi|306896222|gb|EFN26972.1| glucose-inhibited division protein A [Sinorhizobium meliloti AK83]
          Length = 450

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV+GGG AG  AA  AAK G S  L   + +  G++   PA G      L        
Sbjct: 5   DIIVVGGGPAGVSAAIEAAKSGLSVMLCEQRPALGGAIHRQPAEGATPVAVLPSLRGRWQ 64

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
            L   ++ A+G+  R      G    G     DR   ++ ++R
Sbjct: 65  ALSAELS-ASGVDVRRRRAFVGVDSTGAVLIEDRAAGKVEVRR 106


>gi|329116237|ref|ZP_08244954.1| flavoprotein family protein [Streptococcus parauberis NCFD 2020]
 gi|326906642|gb|EGE53556.1| flavoprotein family protein [Streptococcus parauberis NCFD 2020]
          Length = 390

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 134/423 (31%), Gaps = 78/423 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             Y+ IVIGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   NKYETIVIGGGPAGMMAAISSSYHGYKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G   + +   R        R I+   
Sbjct: 58  LEELLAGIPGNGRFLYSVFSQFDNHDIIAFFQDNGVALKEEDHGRMFPTTDKSRTIIGA- 116

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+     + G       + S+   D        N    C  +++TTG            
Sbjct: 117 -LEAKIQALGGHILPNTEVISVKKIDDVFHVKSANEEFTCDKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F  +   L+      L      +     Q  D   +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKLNITELEAAESPLL----TDFPHKALQGIDLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R+       S +  G+I +         +D +V + E
Sbjct: 218 YDKHVITHDLLFTHFGLSGPAALRL------SSFVSGGEIATLDFL-PKMTQDDLVHYLE 270

Query: 288 RNGHQIFL--------EPEGLNTDVVYPNGISTALPEEIQHQF--IRTIP-------GLE 330
            N  +           E         Y   +    P E++     ++ +P        L 
Sbjct: 271 DNRDKSLKNALKGLVPERVAEFIATGYAEKVKQLSPNELEEVMDKLKKMPIPITGKMSLA 330

Query: 331 KVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
           K  + + G       ++ KE+ P TLE+K++ GL  AG+   IN  TG      A   G 
Sbjct: 331 KSFVTKGG-------VDLKEINPKTLESKQVPGLHFAGEVLDINAHTGGFNITSALCSGW 383

Query: 384 VAG 386
           VAG
Sbjct: 384 VAG 386


>gi|229515879|ref|ZP_04405337.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae TMA 21]
 gi|229347142|gb|EEO12103.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae TMA 21]
          Length = 395

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 122/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|261408430|ref|YP_003244671.1| hypothetical protein GYMC10_4643 [Paenibacillus sp. Y412MC10]
 gi|261284893|gb|ACX66864.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 476

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 86/492 (17%), Positives = 147/492 (29%), Gaps = 129/492 (26%)

Query: 5   SYDVIVIGGGHAGCEAAAVAA------------------KLGA-----STALITHKTSTI 41
            YDVIV+G G AG  A                       +           L        
Sbjct: 3   KYDVIVVGAGPAGIFACYELTLKSPGSRVLLVDKGHDIYRRSCPILEEKIKLCPPAVGRK 62

Query: 42  GSMSCNPA------IGG-----LGKGHLVREIDALDGLM-----GRVADAAGIQFRVLNV 85
               C PA       GG      GK ++  E     G M     G            +N+
Sbjct: 63  EFAGCLPACSITAGFGGAGAYSDGKFNITTE---FGGWMTDYLPGSKVMELIQYVDAINL 119

Query: 86  KKG--PAVRGPRTQADREL----YR------LAMQREILSQENLDV-------------- 119
           + G  PA+  P T A R++    Y        A  R + +++NL++              
Sbjct: 120 EHGATPAITDPTTHAIRDIEQRGYAAGLKLLRAQVRHLGTEQNLEILKSIYEYLKTRIDM 179

Query: 120 -IQGEVAGFNTEK----NIISSIVMQDNSMIRCSTVVLT---------TGTFLRGVIHIG 165
             + EV    T K    + ++ I M+   +   + V++          TG      + + 
Sbjct: 180 AFRAEVEDIVTVKEDGTHRVTGIAMKGGEVHEANLVMVAPGRDGSAWLTGILKERRLKMH 239

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             ++  G   ++    +               T    R+  +T   + +     +     
Sbjct: 240 NNQVDVGVRVETSDVVMREINEHLYEGKFIFNTSVGTRV--RTFCSNPSGHVVVENHSGV 297

Query: 226 FSFMTDKITNRQIECGITRTNL---------ETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
            +       +  +  G   TN          E      E  +     + D+ S G     
Sbjct: 298 MAANGHSYKDPAL--GSANTNFALLVSHKFTEPFDKPNEYAREICKRANDLSSGG----- 350

Query: 277 SIEDKIVRFGERNG---------HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
                + +FG+             + FLEP         P  +   LP       I  + 
Sbjct: 351 ---VIVQKFGDVLRGRRSTEGRIREGFLEPT---LKEAVPGDLGLVLPYNTMKSLIEMVE 404

Query: 328 GLEKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-TTGYEE 377
            L++V    PG        Y +E  + + + +L  + ET +I GL+  G   G T G  +
Sbjct: 405 ALDQVT---PGIASEHTLFYGVEAKFYSARPKLSDSFET-EIKGLYCGGDGAGITRGLAQ 460

Query: 378 AAAQGLVAGINS 389
           A A G+    N 
Sbjct: 461 AGAAGVWIARNM 472


>gi|126662144|ref|ZP_01733143.1| Uncharacterized FAD-dependent dehydrogenase [Flavobacteria
           bacterium BAL38]
 gi|126625523|gb|EAZ96212.1| Uncharacterized FAD-dependent dehydrogenase [Flavobacteria
           bacterium BAL38]
          Length = 518

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 30/188 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPA 49
              +V+VIG G AG  AA    +LG    ++                    I +   N  
Sbjct: 82  NKQEVLVIGAGPAGLFAALQLIELGLKPIVLERGKDVRGRRRDLKAINVDHIVNEDSNYC 141

Query: 50  IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY------ 103
            G  G G         DG +   +   G   R+L +  G     P    +   +      
Sbjct: 142 FGEGGAGT------YSDGKLYTRSKKRGDVDRILALLVGF-GATPDIMVEAHPHIGTNKL 194

Query: 104 ---RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
                 ++ +I++     + +  V  F  + N +  +V Q+  +I  + V+L TG   R 
Sbjct: 195 PQIIQDIREKIIACGGQVLFETRVTDFVVKNNEMQGVVTQNGDVISSNKVILATGHSARD 254

Query: 161 VIHIGKLK 168
           +  +   K
Sbjct: 255 IFELLHKK 262


>gi|91213975|ref|YP_543961.1| putative dihydrolipoamide dehydrogenase CdlD [Escherichia coli
           UTI89]
 gi|117626638|ref|YP_859961.1| putative dihydrolipoamide dehydrogenase [Escherichia coli APEC O1]
 gi|18152912|gb|AAL61901.1| putative dihydrolipoamide dehydrogenase CglE [Escherichia coli]
 gi|91075549|gb|ABE10430.1| putative dihydrolipoamide dehydrogenase CdlD [Escherichia coli
           UTI89]
 gi|115515762|gb|ABJ03837.1| putative dihydrolipoamide dehydrogenase [Escherichia coli APEC O1]
 gi|222036066|emb|CAP78811.1| dihydrolipoamide dehydrogenase CdlD [Escherichia coli LF82]
 gi|294491619|gb|ADE90375.1| invasion protein IbeA [Escherichia coli IHE3034]
 gi|307629488|gb|ADN73792.1| putative dihydrolipoamide dehydrogenase [Escherichia coli UM146]
 gi|312948949|gb|ADR29776.1| putative dihydrolipoamide dehydrogenase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|320195274|gb|EFW69902.1| putative dihydrolipoamide dehydrogenase [Escherichia coli
           WV_060327]
 gi|324005115|gb|EGB74334.1| FAD dependent oxidoreductase [Escherichia coli MS 57-2]
          Length = 454

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 72/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLSAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITESGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              + + +  +++++      I    +V  TG                        + L 
Sbjct: 132 VIKDGDTLCGVIVENKSGRGAILAKRIVDCTG-------DADIAARAGAPWTKRSKDQLM 184

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 185 GVTVMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|255537956|ref|XP_002510043.1| Squalene monooxygenase, putative [Ricinus communis]
 gi|223550744|gb|EEF52230.1| Squalene monooxygenase, putative [Ricinus communis]
          Length = 534

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 50/152 (32%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 69  DIIIVGAGVAGSALAHTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 128

Query: 60  REIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA    G      D    Q      K    V G      R  +   M+ +  S  N+
Sbjct: 129 EEIDAQRVFGY-ALFMDGKHTQLSYPLEKFHSDVAGRSFHNGR--FIQRMREKASSIPNV 185

Query: 118 DVIQGEVAGFNTEKNIISSIV--MQDNSMIRC 147
            + QG V     EK II  +V   +    +  
Sbjct: 186 RLEQGTVTSLIEEKGIIRGVVYKTKTGEELTA 217


>gi|159904909|ref|YP_001548571.1| geranylgeranyl reductase [Methanococcus maripaludis C6]
 gi|209572863|sp|A9A6R1|GGR_METM6 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|159886402|gb|ABX01339.1| geranylgeranyl reductase [Methanococcus maripaludis C6]
          Length = 390

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +N SYDV+V+G G AG  A+  A+K GA T LI         + C
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLIEKSQEIGTPVRC 48


>gi|150403306|ref|YP_001330600.1| geranylgeranyl reductase [Methanococcus maripaludis C7]
 gi|209572864|sp|A6VJ23|GGR_METM7 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|150034336|gb|ABR66449.1| geranylgeranyl reductase [Methanococcus maripaludis C7]
          Length = 390

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +N SYDV+V+G G AG  A+  A+K GA T LI         + C
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLIEKSQEIGTPVRC 48


>gi|45357951|ref|NP_987508.1| geranylgeranyl reductase [Methanococcus maripaludis S2]
 gi|74555631|sp|Q6M083|GGR_METMP RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|44920708|emb|CAF29944.1| geranylgeranyl bacterial chlorophyll reductase related
          [Methanococcus maripaludis S2]
          Length = 390

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +N SYDV+V+G G AG  A+  A+K GA T LI         + C
Sbjct: 4  LNDSYDVVVVGAGPAGSMASYNASKNGAKTLLIEKSQEIGTPVRC 48


>gi|154490787|ref|ZP_02030728.1| hypothetical protein PARMER_00704 [Parabacteroides merdae ATCC
           43184]
 gi|154088852|gb|EDN87896.1| hypothetical protein PARMER_00704 [Parabacteroides merdae ATCC
           43184]
          Length = 619

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 25/175 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++V+G G AG  AA  AA+LG   ALI  +          P +GG        EI  
Sbjct: 183 EYDLVVVGAGIAGMSAAVSAARLGCRVALINDR----------PVVGGNNSS----EIRV 228

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
             G  GR+ +    +   L  + GP   G    A+    +  M   +  ++N+ +     
Sbjct: 229 HLG--GRIEEGTYKELGGLQKEFGPEKGGNAQPAEYYEDQKKMDW-LAGEKNVSLFLNYR 285

Query: 124 VAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             G   E + I+S+V++          +       TG    G  ++       GR
Sbjct: 286 AIGVTKEGDKITSVVVKHIESGKELKFKAPLFSDCTGDGTIG--YLAGADYRMGR 338


>gi|171186184|ref|YP_001795103.1| geranylgeranyl reductase [Thermoproteus neutrophilus V24Sta]
 gi|170935396|gb|ACB40657.1| geranylgeranyl reductase [Thermoproteus neutrophilus V24Sta]
          Length = 358

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 64/200 (32%), Gaps = 33/200 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------KGHLV 59
           YDV+++G G AG  AA VAA+LG   A+       +      P  GGL          L 
Sbjct: 2   YDVVIVGAGPAGSTAALVAARLGLKAAV----IDRLQPPREKPCGGGLTPRTWKLLNRLG 57

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E             AAG ++    ++K P +   R + D           IL Q N + 
Sbjct: 58  VEYPVYGSCQNIETRAAGYRYV---LRKEPILITRRPEFD---------YAILRQSNAEF 105

Query: 120 IQGEVAGFNTEKNIISS---------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           I+  V G   E   +           ++  D +    +  +            I  + I 
Sbjct: 106 IKDHVLG--VEGGRVLGRAGEYQGRVVIGADGATSAVARSIGVVNYRQHKSHAIAYMTIA 163

Query: 171 AGRMGDSPSNSLFNSFMKFD 190
            G   D+          K  
Sbjct: 164 RGPTTDTCVIDFDAVVRKTG 183


>gi|261252110|ref|ZP_05944683.1| alkyl hydroperoxide reductase protein F [Vibrio orientalis CIP
           102891]
 gi|260935501|gb|EEX91490.1| alkyl hydroperoxide reductase protein F [Vibrio orientalis CIP
           102891]
          Length = 530

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 43/178 (24%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N     A  GP+  A  E +      E+++++        + 
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEVMTEQ----RAANII 294

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSP 178
                K+    + ++  ++++  TV+ +TG   R     G        +      D P
Sbjct: 295 DAEDSKDGYIHVELESGAVLKARTVITSTGARWREMNVPGEQEYRNKGVAYCPHCDGP 352


>gi|222624514|gb|EEE58646.1| hypothetical protein OsJ_10026 [Oryza sativa Japonica Group]
          Length = 615

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 66  DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 125

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 126 QEIDAQ-RVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGR--FIQRMRQKAASLPNV 182

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 183 QLEQGTVTSLVEEDGTVKGVKYKTKSGEELKA 214


>gi|218192384|gb|EEC74811.1| hypothetical protein OsI_10631 [Oryza sativa Indica Group]
          Length = 578

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 66  DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 125

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 126 QEIDAQ-RVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGR--FIQRMRQKAASLPNV 182

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 183 QLEQGTVTSLVEEDGTVKGVKYKTKSGEELKA 214


>gi|115451725|ref|NP_001049463.1| Os03g0231800 [Oryza sativa Japonica Group]
 gi|113547934|dbj|BAF11377.1| Os03g0231800 [Oryza sativa Japonica Group]
          Length = 530

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 66  DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 125

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 126 QEIDAQ-RVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGR--FIQRMRQKAASLPNV 182

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 183 QLEQGTVTSLVEEDGTVKGVKYKTKSGEELKA 214


>gi|108706999|gb|ABF94794.1| Squalene monooxygenase, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 613

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 149 DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 208

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 209 QEIDAQ-RVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGR--FIQRMRQKAASLPNV 265

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 266 QLEQGTVTSLVEEDGTVKGVKYKTKSGEELKA 297


>gi|27311241|gb|AAO00687.1| Putative Squalene monooxygenase [Oryza sativa Japonica Group]
          Length = 604

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 66  DVIVVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 125

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 126 QEIDAQ-RVLGYALFKDGKDTKLSYPLEKFHSDVAGRSFHNGR--FIQRMRQKAASLPNV 182

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 183 QLEQGTVTSLVEEDGTVKGVKYKTKSGEELKA 214


>gi|15644280|ref|NP_229332.1| fixC protein [Thermotoga maritima MSB8]
 gi|148270390|ref|YP_001244850.1| FAD dependent oxidoreductase [Thermotoga petrophila RKU-1]
 gi|281412696|ref|YP_003346775.1| Electron-transferring-flavoprotein dehydrogenase [Thermotoga
           naphthophila RKU-10]
 gi|4982099|gb|AAD36599.1|AE001800_9 fixC protein [Thermotoga maritima MSB8]
 gi|147735934|gb|ABQ47274.1| FAD dependent oxidoreductase [Thermotoga petrophila RKU-1]
 gi|281373799|gb|ADA67361.1| Electron-transferring-flavoprotein dehydrogenase [Thermotoga
           naphthophila RKU-10]
          Length = 438

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 30/175 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV+V+G G +G   A V AK G   A++               +GG+   H ++E
Sbjct: 1   MKIEFDVVVVGAGPSGLSCAYVLAKNGLKVAVV----EKGEYPGSKNVMGGVLYVHPLKE 56

Query: 62  I------DALDG------LMGRVADAAGIQ------FRVLNVKKGP-AVRGPRTQADREL 102
           I       A +       ++ +     G +       R +  K+ P A    R   DR  
Sbjct: 57  IMPDFLEKAANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDR-- 114

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNT-EKNIISSIVMQD-NSMIRCSTVVLTTG 155
                 +E+     L + + +V  F   EK  I+ +V       I    VV+  G
Sbjct: 115 ---WFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEG 166


>gi|311032913|ref|ZP_07711003.1| Dehydrogenase (flavoprotein) [Bacillus sp. m3-13]
          Length = 431

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------- 53
           +   +D IV+G G AG   A   AK GA+  L                +GG+        
Sbjct: 1   MPEKFDCIVVGAGPAGISCAYELAKGGANVLL----LERGEYPGSKNVMGGVLYRKMMED 56

Query: 54  ------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRL 105
                  +  L R I     +M     A    ++ L   + P       R + D+     
Sbjct: 57  IIPDFHKEAPLERPIVEQRFMMMDKESAVTFGYKGLEWAQEPYNNFTVLRAKFDQWFAGK 116

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
           A+      Q  L V +  V     E   +  +     +  +    VVL  G
Sbjct: 117 AV-----EQGALLVNETVVLECIVENGKVVGVRTDRPDGEVFADVVVLADG 162


>gi|78357509|ref|YP_388958.1| hypothetical protein Dde_2466 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219914|gb|ABB39263.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 515

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 54/179 (30%), Gaps = 30/179 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G AG  AA    + G    ++                 T  +     N   G  
Sbjct: 83  VIVVGAGPAGYFAALSLLEHGIKPVVLERGKDVNARRKDLKKIYTEGLIDPHSNYCFGEG 142

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY---------R 104
           G G         DG +   A   G   RVL++        P  + D   +          
Sbjct: 143 GAGT------YSDGKLYTRATKRGNVSRVLDLL-VQFGASPDIRIDAHPHLGSNVLPGIV 195

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
            AM+  +            VA      + ++ + +     +    V+L TG   R V H
Sbjct: 196 RAMRAAVQDCGGEVHFGAHVADLLLSGDRVTGVRLSGGEAVYADAVILATGHSARDVFH 254


>gi|241206125|ref|YP_002977221.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860015|gb|ACS57682.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 464

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 28/193 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----------SCNPAIGGLGKG 56
           DV+VIGGG +G  AA  AA+LG    L+       G +           C  +    G  
Sbjct: 21  DVLVIGGGPSGLSAAVAAARLGVRVRLV----ERYGFLGGNLTAGLVGPCMTSYSLDGSQ 76

Query: 57  HLVRE--------IDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
            L+R         + AL G +      A +A   F V    K    +    +   +   +
Sbjct: 77  QLIRGIYEEFVQRMMALGGALHPSTIPAGSAYCGFIVYGHDKVTPFQPEAAKVAAQRMCV 136

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHI 164
               E+L      V+   V   + +   +  +V      +      V+   +    V H 
Sbjct: 137 EAGVELLLH--TMVVDAIVDDHDADNPRVLGVVCAGKGGLRSARAKVVVDCSADGDVAHY 194

Query: 165 GKLKIPAGRMGDS 177
             +    GR  D 
Sbjct: 195 AGVHTRQGRESDG 207


>gi|299144748|ref|ZP_07037816.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 3_1_23]
 gi|298515239|gb|EFI39120.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 3_1_23]
          Length = 516

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 55/275 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      IG          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERIGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD        L               D   +R                   
Sbjct: 263 TTGN---ELADNLKTHL--LCYP-----------VDLLEHRK------------------ 288

Query: 124 VAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                 EK  +      I            +++ TG   R  +++       GR      
Sbjct: 289 -----VEKVEVVGKQKQITTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCP 342

Query: 180 NSLFNSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +     +  K     G   +G  A +D   I   K       + L   S + D++  + +
Sbjct: 343 HCDGPFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQDRL--KSL 399

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
                  + +T  +I    K +A+   D K+   R
Sbjct: 400 PNVEVFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|302877327|ref|YP_003845891.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Gallionella capsiferriformans ES-2]
 gi|302580116|gb|ADL54127.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Gallionella capsiferriformans ES-2]
          Length = 463

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +YDVI+IG G AG  AA  AA++G   A+I             P +GG G
Sbjct: 2  NYDVIIIGSGPAGQHAAWQAARMGKRAAIIE----------RKPNLGGAG 41


>gi|237715722|ref|ZP_04546203.1| FAD dependent oxidoreductase [Bacteroides sp. D1]
 gi|262408730|ref|ZP_06085276.1| FAD dependent oxidoreductase [Bacteroides sp. 2_1_22]
 gi|294643971|ref|ZP_06721755.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294807248|ref|ZP_06766062.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298481557|ref|ZP_06999749.1| FAD dependent oxidoreductase [Bacteroides sp. D22]
 gi|229444431|gb|EEO50222.1| FAD dependent oxidoreductase [Bacteroides sp. D1]
 gi|262353595|gb|EEZ02689.1| FAD dependent oxidoreductase [Bacteroides sp. 2_1_22]
 gi|292640664|gb|EFF58898.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CC 2a]
 gi|294445546|gb|EFG14199.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295087017|emb|CBK68540.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase (E3) component, and related enzymes
           [Bacteroides xylanisolvens XB1A]
 gi|298272421|gb|EFI13990.1| FAD dependent oxidoreductase [Bacteroides sp. D22]
          Length = 424

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGL 53
           M  + YDVIV G G AG  AA  AA+ GA  AL        G +  N       P +G +
Sbjct: 1   MNTKYYDVIVAGAGPAGICAAVAAARQGARVAL----IERYGVIGGNLTAGYVGPILGSV 56

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            K  +  E+ A+ G+  +  D  G          G A        D E  +L +   +  
Sbjct: 57  SKNTMRDEVCAILGV--KDNDWIGEH--------GNAH-------DFEEAKLTLAEFVAR 99

Query: 114 QENLDVI-QGEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTFLRGVIHIGKLKI 169
           ++N+DV  Q  V+    +  ++  I    N        +  +  TG  +   +     KI
Sbjct: 100 EKNIDVFLQCCVSDVIRDGKVVKGIKCASNEGTLCFEAAVTIDCTGDAIVSFL--AGAKI 157

Query: 170 PAGRM 174
             GR 
Sbjct: 158 EKGRA 162


>gi|56964428|ref|YP_176159.1| succinate dehydrogenase flavoprotein subunit [Bacillus clausii
           KSM-K16]
 gi|56910671|dbj|BAD65198.1| succinate dehydrogenase flavoprotein subunit [Bacillus clausii
           KSM-K16]
          Length = 589

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 118/408 (28%), Gaps = 86/408 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           ++V+GGG AG  A   AA+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IVVVGGGLAGLMATIKAAEKGVPVDLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPYEH 65

Query: 62  --IDALDG-----------------LMGRVADAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G                  +  + D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMTEAAPAIIHLMDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG 155
                    +   +  Q    V + EV G  T  E     S V+ D    R  T      
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRYEVQGLVTKYEGWEFLSAVIDDEGACRGITAQELNS 181

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
             +R       +    G       +   NS +   F   +L     A  +G+ I    T 
Sbjct: 182 AEIRSFSADAVIMATGGPGIIFGKS--TNSMINTGFAAAKLYEQGVAYANGEFIQIHPTA 239

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
               D++L   S        R      T  + +    + E                P Y 
Sbjct: 240 I-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYG 280

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK--- 331
             +   I        H    E  G+N  ++VY + +S   P+E+  +    I   EK   
Sbjct: 281 NLVPRDIAT--REIFHVCVDEKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFTG 337

Query: 332 ------------VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
                             G      +++  ++        I GLF AG
Sbjct: 338 DDPRKVPMKIFPAVHYSMGGM----WVDYDQMT------NIPGLFAAG 375


>gi|330995607|ref|ZP_08319507.1| FAD dependent oxidoreductase [Paraprevotella xylaniphila YIT 11841]
 gi|329575013|gb|EGG56566.1| FAD dependent oxidoreductase [Paraprevotella xylaniphila YIT 11841]
          Length = 409

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 61/215 (28%), Gaps = 61/215 (28%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGA-STALITHKTST----------IGSMSCNPA 49
           M+ + YDVI+IGGG  GC  A   AK       L+                +      PA
Sbjct: 1   MMEQDYDVIIIGGGLLGCATAYQLAKRKVGKVLLLDANEIASQASSRAACLLTRARTKPA 60

Query: 50  IGGLGK---------GHLVR---EIDALDGLMGRVADAAGIQFRVLNVKKG----PAVRG 93
           +  + +          HL+    E+     +    +DA+  +   L         P  R 
Sbjct: 61  LMEMVQETYDCIDEIEHLLGESLELQQCGSVTISSSDASLKELEALEEAAVRFGIPNERI 120

Query: 94  PR------------TQADRELYRLA---------------MQREI--LSQENLDVIQGEV 124
            R            +  +  LY L                  R +    + N      +V
Sbjct: 121 DRRRLKELLPWMEVSAVEEALYMLTDAFIDCALLCSGYARAARVLGAELRPN-----TKV 175

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                     + + + D   I    VV   G++  
Sbjct: 176 KAIVAVGGKATGVELADGEKILAPVVVNAAGSWAN 210


>gi|315637428|ref|ZP_07892641.1| flavoprotein [Arcobacter butzleri JV22]
 gi|315478320|gb|EFU69040.1| flavoprotein [Arcobacter butzleri JV22]
          Length = 411

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 125/409 (30%), Gaps = 70/409 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL--- 58
           +   YD IVIGGG AG  A+   A    S  L+  K   I +        G GK +L   
Sbjct: 1   MKNIYDCIVIGGGPAGILASISCANEKNSVLLLE-KLPKIAA---KLKATGGGKCNLTNT 56

Query: 59  --VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILS 113
               E  A  G  GR    A   F   +++   A  G  T A    R          ILS
Sbjct: 57  LSTEEFMAKFGKNGRFMSHALELFNASDLRNFFAKIGVETIARDGFRVFPVNHSSSIILS 116

Query: 114 QENLDV------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             N ++      ++  VA    +K     I+   + + +   ++++TG     ++     
Sbjct: 117 ALNEELQRVGIDVECSVAIQTIKKEDDVFIITSKDKIYKSKNIIISTGGLGYPILGATGD 176

Query: 168 KIPAGRMGDSPSNS-----LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
                +       S     +     + +F + +  T   A L      +   +    D  
Sbjct: 177 GYIYAKDFGHSITSTHPAMMPLMTKEKNFASCKADTIAKAILKVNIAKYKNLKL-VGDLI 235

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
                     I                     E     A +S            + E+  
Sbjct: 236 FTKEGLRGPVI----------------LDFAREITPILAKHSEVPLLINFLKGKNEEEIF 279

Query: 283 VRFGER----NGHQIFLEPEG-----LNTDVVYPNGISTALPEEI-----QHQFIRTI-- 326
                       H I    E      + T+++    I T+L  +      + + ++T+  
Sbjct: 280 SHLKNEIAKNPTHTILENLETLLATSVATEILNICQIDTSLRFKQIEGFKREKLVKTLAW 339

Query: 327 --------PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
                    G +   I R G  +E   I  K    T+++K + GL+  G
Sbjct: 340 TPFTIIGHEGFKNAMITRGG--VELKEIESK----TMQSKIVDGLYFCG 382


>gi|257792033|ref|YP_003182639.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257475930|gb|ACV56250.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
          Length = 565

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            + +DV+V+G G AG  A   AA+ GA T +I   T
Sbjct: 68  TQDFDVVVVGAGLAGINATEAAARNGAKTVVIERNT 103


>gi|138896376|ref|YP_001126829.1| hypothetical protein GTNG_2739 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267889|gb|ABO68084.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 433

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--ID 63
           YDVI+IGGG +G  AA  A + GA+  L          +    AI G G+ ++     ID
Sbjct: 3   YDVIIIGGGPSGLMAAIAAGEQGANVLL----LEKGTKLGRKLAISGGGRCNVTNRLPID 58

Query: 64  ALDGLMGRVADAAGIQFRVLN----VKKGPAVRGPRTQAD------RELYRLAMQREILS 113
            +   +          F V N    ++    +  P  + D      +     ++   +++
Sbjct: 59  EIVRHIPGNGRFLYSAFSVFNNEDIIRFFERLGVPLKEEDHGRMFPKSDSAQSVVTALVN 118

Query: 114 QEN---LDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +     +D+  +  V     E      + ++    I  + VV+  G
Sbjct: 119 ELGRLKVDIRLEAPVEDVLYEHGKTVGVKLKSGETIAANAVVVAVG 164


>gi|219888601|gb|ACL54675.1| unknown [Zea mays]
          Length = 529

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 63  DVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCV 122

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   ++    +               +   M+++  S  N+ +
Sbjct: 123 EEIDAQ-RVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQL 181

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   +  +    +    ++ 
Sbjct: 182 EQGTVTSLLEENGTVKGVQYKTKSGEELKA 211


>gi|226499526|ref|NP_001151921.1| LOC100285558 [Zea mays]
 gi|195651095|gb|ACG45015.1| squalene monooxygenase [Zea mays]
          Length = 539

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 75  DVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCV 134

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   ++    +               +   M+++  S  N+ +
Sbjct: 135 EEIDAQ-RVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQL 193

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   +  +    +    ++ 
Sbjct: 194 EQGTVTSLLEENGTVKGVQYKTKSGEELKA 223


>gi|226508784|ref|NP_001142166.1| hypothetical protein LOC100274333 [Zea mays]
 gi|194707442|gb|ACF87805.1| unknown [Zea mays]
          Length = 529

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 63  DVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCV 122

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   ++    +               +   M+++  S  N+ +
Sbjct: 123 EEIDAQ-RVLGYALFKDGRNTKLAYPLEKFHSDVAGRSFHNGRFIQRMRQKAASLPNVQL 181

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   +  +    +    ++ 
Sbjct: 182 EQGTVTSLLEENGTVKGVQYKTKSGEELKA 211


>gi|223985437|ref|ZP_03635498.1| hypothetical protein HOLDEFILI_02804 [Holdemania filiformis DSM
           12042]
 gi|223962597|gb|EEF67048.1| hypothetical protein HOLDEFILI_02804 [Holdemania filiformis DSM
           12042]
          Length = 600

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 49/194 (25%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG--SMSCNPAIGGLGKGHLVREI-- 62
           D++VIG G AG  AA  AA+ GA   LI  K   +G  S+  N   G +G     +E   
Sbjct: 166 DIVVIGSGAAGMTAAISAAQQGAKVILIE-KQDILGGTSLLSNSMFGSVGTSVHQKEGKT 224

Query: 63  ----DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-TQADRELYRLAMQREILSQE-- 115
               D     M + A A G         K  A R      A+R  Y +++  E+      
Sbjct: 225 ETVEDLYQNYMKQEA-ATGA------YAKAEAARILAENAAERAEYLISLGVELDHTSSA 277

Query: 116 --------------------------NLDVIQGE-VAGFNTEKNIISSI-VMQDNSMI-- 145
                                     ++DV  G       TE + +  + V  +      
Sbjct: 278 FILAPKGGSGLGAMVIPALNGELEKLDVDVRTGTKATHILTEGDQVKGVSVTTEGGEYNI 337

Query: 146 RCSTVVLTTGTFLR 159
           +   V++ TG +  
Sbjct: 338 QAKAVIMATGGYAA 351


>gi|158187219|gb|ABW22839.1| 3-hydroxybenzoate-6-hydroxylase [Burkholderia sp. NCIMB 10467]
          Length = 410

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--------GKGHL 58
           DV+VIG G  G  A    A+LG +  L+    S IG +     +G          G G  
Sbjct: 9   DVLVIGAGIGGLAATLSLARLGLTVDLLEQSPS-IGEIGAGLQLGPNAFAALDALGVGQA 67

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYRLAMQREILSQ 114
           VR+       +  + DA      V N+  G   R     P     R     A+   + + 
Sbjct: 68  VRDSAVFTERLLLM-DAVDCH-EVANLPVGQEFRERFGNPYAVIHRADLHNALYAAVCAH 125

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           E + V            +  +++      +     ++   G
Sbjct: 126 EGVRVHTDSRVSSVKFDDKSATVETSKGELYTAKALIGCDG 166


>gi|309388292|gb|ADO76172.1| FAD dependent oxidoreductase [Halanaerobium praevalens DSM 2228]
          Length = 491

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 53/211 (25%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAI--------G 51
           M   +YDVI++GGG +GC  A   A+      L+  +     G+   N AI         
Sbjct: 1   MSKNNYDVIIVGGGISGCAVAWKLARYNLDVLLLEKEPDVATGTTKANTAIIHAGYNADP 60

Query: 52  GLGKGHL-------VREI--------DALDGLM-------------------------GR 71
              KG L       ++EI        + +  L+                          +
Sbjct: 61  EKQKGRLNNKGNVQIKEIVKDLNVPFEEIGSLVVGMEGDDLSVLDDLLEKGKKNGVEGLK 120

Query: 72  VADAAGIQFRVLNVK--KGPAVRGPRTQADR-ELYRLAMQREILSQENLDVIQGEVAGFN 128
           + D   +Q    N+      A+  P         + LAM    ++      ++ EV    
Sbjct: 121 IVDKEWLQKEEPNLSDKAVKALWAPTAGIITPWEFALAMAENAVANGVEVKLETEVLDVY 180

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           TE + +  +        +   V+   G +  
Sbjct: 181 TEADQVRGVKTNQGD-FKADYVINAAGLYAD 210


>gi|295701219|ref|YP_003610220.1| electron-transferring-flavoprotein dehydrogenase [Burkholderia sp.
           CCGE1002]
 gi|295441542|gb|ADG20709.1| Electron-transferring-flavoprotein dehydrogenase [Burkholderia sp.
           CCGE1002]
          Length = 437

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 22/166 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-- 62
            +D IV+G G +G  AA V AK G        +             G +   + ++EI  
Sbjct: 6   QFDAIVVGAGPSGNAAAYVMAKGGLKVL----QIERGEYPGSKNVQGAILYANALQEIIP 61

Query: 63  ----------DALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                       ++  M  + D +  G   R  +  K P     R    R  +      +
Sbjct: 62  DFRDDAPLERHIIEQRMWMLDDTSFVGTHARSDDYNKPP---YNRYTIIRAQFDKWFSSK 118

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTG 155
           +     L + +  V     + + +  +   +++  +  + V+L  G
Sbjct: 119 VREAGALLICETTVNDLILDGDQVVGVQCDREHGEVYANVVILADG 164


>gi|266623476|ref|ZP_06116411.1| thioredoxin reductase [Clostridium hathewayi DSM 13479]
 gi|288864736|gb|EFC97034.1| thioredoxin reductase [Clostridium hathewayi DSM 13479]
          Length = 308

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 40/167 (23%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI++G G AG  AA  AA+   +  L+               +   G+     EI  
Sbjct: 3   QYDVIIVGAGPAGMTAAIYAARADMNVLLL-------------DKLAPGGQIINTNEIQN 49

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             G+          Q                           M       EN+    G V
Sbjct: 50  YPGVGTINGAELAYQ---------------------------MFEHTQQFENIAFDYGTV 82

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                E  +   +  +D+       ++L TGT  R +   G+ K   
Sbjct: 83  KEILDEGKVKKVLCEEDDKEFTAKAIILATGTRPRCLDIPGEDKFRG 129


>gi|262192029|ref|ZP_06050193.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae CT 5369-93]
 gi|262032081|gb|EEY50655.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae CT 5369-93]
          Length = 395

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 121/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWNFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
               Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|126739324|ref|ZP_01755017.1| dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
 gi|126719424|gb|EBA16133.1| dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
          Length = 464

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +SYDVIVIG G  G  AA  AA+LG  TA++       I    G +     +     
Sbjct: 1   MAAQSYDVIVIGAGPGGYVAAIRAAQLGLKTAIVEREHLGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+ E  A  GL             V+   +G A +                  ++ + 
Sbjct: 61  FHLM-ERAAEFGLKAEKI--GYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV 161
            + V+ GE +     K  ++ +        +    +VL TG   R +
Sbjct: 107 KITVVMGEAS--IPAKGKVA-VKTDKGVEDLTAKNIVLATGARAREL 150


>gi|332982319|ref|YP_004463760.1| hypothetical protein Mahau_1757 [Mahella australiensis 50-1 BON]
 gi|332699997|gb|AEE96938.1| HI0933 family protein [Mahella australiensis 50-1 BON]
          Length = 436

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 30/177 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YD IV+G G AG  AA   A+   S AL                 GG        
Sbjct: 1   MSSDRYDAIVVGAGPAGSSAALTMAQNNLSVAL----LERGDYPGSKNMFGGTIYTAPTE 56

Query: 61  EI-----------DALDGLMGRVAD---AAGIQFRVLNVKKGP--AVRGPRTQADRELYR 104
           EI             +        D   A  I F  L   K P       R + D     
Sbjct: 57  EIIPAFWQQAPLERPVVSDELWFVDHDSAVKIGFTGLRFAKPPFNKFTALRAKFD----S 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEK-----NIISSIVMQDNSMIRCSTVVLTTGT 156
               + + +  +L + +        E+       +  +++ +  ++R   VVL  G 
Sbjct: 113 WLAHKAVEAGAHL-LTKALATDLVYERTGLMSKKVDGVLLDNGDVLRADVVVLAEGA 168


>gi|298373673|ref|ZP_06983662.1| alkyl hydroperoxide reductase, F subunit [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274725|gb|EFI16277.1| alkyl hydroperoxide reductase, F subunit [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 516

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 61/274 (22%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD++V+GGG AG  AA  +A+ G + A++                            +
Sbjct: 210 KEYDLVVVGGGPAGTSAAIYSARKGLNVAVVA---------------------------E 242

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            + G +            + N+   P   G    A  + +       +L Q  +D I+ E
Sbjct: 243 RIGGQVNETV-------GIENLPSVPQTTGAELAAALKTHAQTYNITLLEQRLVDAIREE 295

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
             GF                 ++ S V++ TG   R  + +       GR      +   
Sbjct: 296 DGGFVLS--------TSLGEELKTSQVIIATGAKWR-KLGVEGEDRYIGRGVAFCPHCDG 346

Query: 184 NSFMKFDFD-TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD-------KITN 235
             F        G   +G  A +D   I             +    FM +       +   
Sbjct: 347 PFFKDRRVAVVGGGNSGIEAAIDLAGIC----------SHVTVLEFMPELKADVVLQQKV 396

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
           R +      TN+ T  I+ +  K   I   D K+
Sbjct: 397 RSLPNVEVFTNVATEEIVGDGSKVMGIRVKDRKT 430


>gi|320451351|ref|YP_004203447.1| thioredoxin reductase-like protein [Thermus scotoductus SA-01]
 gi|320151520|gb|ADW22898.1| thioredoxin reductase related protein [Thermus scotoductus SA-01]
          Length = 180

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +DV+V+GGG +G  AA   A+ G    ++    S I  +S  P   GL      +E+
Sbjct: 2  WDVLVVGGGPSGLSAALFLARAGLKVLVLDGGHSKIAQVSRVPNYPGLLDEPSGKEL 58


>gi|332797823|ref|YP_004459323.1| geranylgeranyl reductase [Acidianus hospitalis W1]
 gi|332695558|gb|AEE95025.1| geranylgeranyl reductase [Acidianus hospitalis W1]
          Length = 452

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLVR 60
           +  +YDV++IGGG AG   A   A  G    LI  K  + IG   C  A+      +L  
Sbjct: 1   MKNNYDVLIIGGGFAGATTAWHLANHGLKVLLIDSKPWNRIGDKPCGDAVSKEHFDNL-- 58

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            +   +G         GI+    ++K    V+G   + +   Y   + +E  ++    + 
Sbjct: 59  GMPYPEGEQLEQ-KIEGIKLYSPDMKTEWIVKGEGFEINAPAYTQRLLKEASNRGVEVLD 117

Query: 121 QGEVAGFNTEKNIISSIVMQD-----NSMIRCSTVVLTTGTFLRGV 161
                    E   +   ++ D        +R   VV  TG  +   
Sbjct: 118 MTTAMKPIFEDGFVKGAILFDRRHNQQIEVRAKVVVEATGYSMSFR 163


>gi|319788378|ref|YP_004147853.1| monooxygenase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466890|gb|ADV28622.1| monooxygenase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 460

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGS--MSCN-PAIGGLGKGHLVR 60
           DV+VIGGG AG  AA   A+ G    L+         IG   +  N P +  LG    VR
Sbjct: 26  DVLVIGGGPAGTTAATFLARRGRKVVLLEKDVHPRFHIGESLLPMNLPILERLGVLEQVR 85

Query: 61  EIDAL----DGLMGRVADAAGIQF--RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           +I       D  M   AD+  +    R LN + G A +  R + D  L+  A+   + ++
Sbjct: 86  QIGVYKPGADFPMRGNADSVNVFRFDRALNPRFGHAYQVKRAEFDTILFDNAIASGVDAR 145

Query: 115 ENLDVIQGE 123
           + + V Q E
Sbjct: 146 QQVKVEQVE 154


>gi|317506918|ref|ZP_07964690.1| FAD dependent oxidoreductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254846|gb|EFV14144.1| FAD dependent oxidoreductase [Segniliparus rugosus ATCC BAA-974]
          Length = 453

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 47/157 (29%), Gaps = 6/157 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G   AG   A   A+ G     +  K S +G       +   G   L R    
Sbjct: 3   KFDVVVVGARCAGSALAMQLARQGLRV-CVAEKASALGDKPSTHLLTASGTAVLERLGVL 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQ 121
            D L         +QFRV +      +          + R  +   +L        DV  
Sbjct: 62  DDVLAAGATQLRTMQFRVNDATVASHMDTEILGVTLGIRREVLDNVLLEHAAKAGADVRL 121

Query: 122 GE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           G  V     E + +         +     VV   G  
Sbjct: 122 GCPVDSVLVEDSRVVGAATASGPV-HADLVVGADGAH 157


>gi|330915375|ref|XP_003297004.1| hypothetical protein PTT_07272 [Pyrenophora teres f. teres 0-1]
 gi|311330554|gb|EFQ94900.1| hypothetical protein PTT_07272 [Pyrenophora teres f. teres 0-1]
          Length = 426

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 28/219 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           VI++G G AG  AA   ++ G +  L+        I       +    G  H  R     
Sbjct: 14  VIIVGAGFAGLSAAIECSRKGHTVMLLDKAASPDEITQFGDIISFDPNGARHFER----W 69

Query: 66  DGL---MGRVADAAG--------IQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILS 113
            G+   M +VA             +F      +G    GPR    R EL+ +  +  +  
Sbjct: 70  PGVIEAMKKVARKTTWLDFYSWKGEFVTRQSFEGEKNWGPRINGHRGELWSIIYRHAVER 129

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV---IHIGKLKIP 170
              +++          E    + +++ D   +    VV   G   RG    +        
Sbjct: 130 --GVEIRWSSRVSDYVENEERAGVIV-DGEEMVADVVVAAEGVRSRGRKIVLGFDDKPKS 186

Query: 171 AG----RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
           +G    R   S  +   N  +K   D           L 
Sbjct: 187 SGYAVYRSWFSGDSIRSNPTLKHLVDGDSHSGFIGPDLH 225


>gi|116196320|ref|XP_001223972.1| hypothetical protein CHGG_04758 [Chaetomium globosum CBS 148.51]
 gi|88180671|gb|EAQ88139.1| hypothetical protein CHGG_04758 [Chaetomium globosum CBS 148.51]
          Length = 509

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 32/171 (18%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLGK 55
           +   D++V+G G  GC AA   A  G S  L+    H+   I      P    A+  LG 
Sbjct: 19  HHEADIVVVGAGIFGCAAAFALANQGRSVILLERWMHEPDRIVGELLQPGGVDALRKLGL 78

Query: 56  GHLVREIDA--LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR--------- 104
            H + +IDA    G    +               G  + G   + +   Y          
Sbjct: 79  EHCLEDIDAVPCQGYHVILRGQETSFLYPPLTGDGEVIVGAGQRKEVNEYANGDVKEPVR 138

Query: 105 ------------LAMQREILSQENLDVIQGEVAGFNTEKN--IISSIVMQD 141
                       + +++  ++  N+ V + EV      ++   +  +  + 
Sbjct: 139 PEGKCFHHGRFIMQLRKACIAHPNISVFETEVTATIKGEHSDAVLGVRTRT 189


>gi|15805976|ref|NP_294676.1| succinate dehydrogenase flavoprotein subunit [Deinococcus
           radiodurans R1]
 gi|6458673|gb|AAF10525.1|AE001947_8 succinate dehydrogenase, flavoprotein subunit [Deinococcus
           radiodurans R1]
          Length = 583

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 62/203 (30%), Gaps = 45/203 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV-- 59
           ++  YDVIV+G G AG  +A  AAK G S A I+    T           G   G++   
Sbjct: 1   MHHRYDVIVVGAGGAGLMSALYAAKGGVSVACISKLYPTRSHTGAAQGGIGAALGNIQED 60

Query: 60  -REIDALDGLMG--RVADAAGIQF-------------------------RVLNVKKGPAV 91
             E    D + G   + D    +                          ++   K G   
Sbjct: 61  HWEWHMFDTIKGGDYLTDQDAAEVFSKDIIEVVYELEHMGLPFSRTPEGKIAQRKFGGHT 120

Query: 92  RG-PRTQADRELYRL----AMQREILSQEN-----LDVIQGEVAGFNTEKNIISSIV--- 138
           R   +   +R  Y       M  + L Q+N     L   +  V     E      +V   
Sbjct: 121 RDFGKAAVERSCYAKDRTGHMILQTLYQQNVKAGTLFFNEFHVTDLIIEDGRCRGVVAYD 180

Query: 139 --MQDNSMIRCSTVVLTTGTFLR 159
               +        V+L  G + R
Sbjct: 181 LATGELHTFHAKAVILAAGGYGR 203


>gi|86138789|ref|ZP_01057361.1| pyruvate dehydrogenase complex, E3 component,
           lipoamidedehydrogenase, putative [Roseobacter sp.
           MED193]
 gi|85824436|gb|EAQ44639.1| pyruvate dehydrogenase complex, E3 component,
           lipoamidedehydrogenase, putative [Roseobacter sp.
           MED193]
          Length = 464

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  ++YDVIVIG G  G  AA  AA+LG  TA++       I    G +     +     
Sbjct: 1   MAAQTYDVIVIGAGPGGYVAAIRAAQLGLKTAIVERENLGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL             V+   +G A +                  ++ + 
Sbjct: 61  FHLMERAKEF-GLGAENI--TYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            + V+ GE       K  +S ++    +  +    ++L TG   R +
Sbjct: 107 KITVVMGEA--MIPAKGKVS-VITDKGTQELTGKNIILATGARAREL 150


>gi|315612821|ref|ZP_07887732.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314931|gb|EFU62972.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis ATCC 49296]
          Length = 404

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 132/416 (31%), Gaps = 64/416 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 15  KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 70

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 71  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 128

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 129 ALEKKITELGGQVATQTEIVSVKKVDDQFVLKSADQNFTCDKLIVTTGG------KSYPS 182

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 183 TGSTGFGHEIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 230

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS--IEDKIVRF 285
           +    IT+  +      +     R +   +K   + S D+         +  +ED   + 
Sbjct: 231 YGKHVITHDLLFTHFGLSGPAALR-MSSFVKGGEVLSLDVLPQLSEKDLAAFLEDNREKS 289

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN---------IIR 336
            +     +  E         YP  +   L E+ + Q +++I  L              + 
Sbjct: 290 LKNALKTLLPERLAEFLSQGYPEKVK-QLTEKEREQLLQSIKALRIPVTGKMSLAKSFVT 348

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
            G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 349 KG-GVSLKEINPK----TLESKLVPGLHFAGEVIDINAHTGGFNITSALCTGWVAG 399


>gi|303246168|ref|ZP_07332449.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
 gi|302492564|gb|EFL52435.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
          Length = 434

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 323 IRTIPGLEKVNIIR-PGYA--IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEA 378
           +R +PG E V   +  G+A  + +    P+     L+ + +  LF AG+  G   G+ EA
Sbjct: 278 LRRVPGFEAVVFGQGCGHANSVRFLSRAPR--NAALQVESVRNLFCAGEKAGFFVGHTEA 335

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMI 412
              G +AG N+ R+   L  +   +T +   ++ 
Sbjct: 336 MVTGSLAGHNAVRRLRGLPPLILPQTLACGDILA 369


>gi|310780240|ref|YP_003968572.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ilyobacter polytropus DSM 2926]
 gi|309749563|gb|ADO84224.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ilyobacter polytropus DSM 2926]
          Length = 320

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 42/161 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YDVI+IGGG AG  AA   ++   ST ++                          E
Sbjct: 1   MDKIYDVIIIGGGPAGLSAALYTSRSKLSTLIL--------------------------E 34

Query: 62  IDALDGLMG---RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            D + G +     VA+  G  F+   ++        R     E +               
Sbjct: 35  KDKMGGQIVTTEEVANYPGSLFKTDEMETSGPKLVARMVKQAEHFGAEK----------- 83

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +++G V   +     I  ++ +DN+     TV++ TG + R
Sbjct: 84  IMKG-VESLDFSGQ-IKKVITEDNTEFLGKTVIIATGAYSR 122


>gi|194444813|ref|YP_002039308.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403476|gb|ACF63698.1| protein FixC [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 428

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|209572882|sp|O27753|GGR2_METTH RecName: Full=Digeranylgeranylglycerophospholipid reductase 2;
          Short=DGGGPL reductase 2; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase 2; AltName: Full=Geranylgeranyl reductase 2;
          Short=GGR 2
          Length = 385

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           YDV+VIGG  AG  AA  AA+LG S  L+         + C
Sbjct: 2  KYDVVVIGGRVAGSTAAYHAARLGLSVLLLERNPEIGTPVQC 43


>gi|323528427|ref|YP_004230579.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Burkholderia sp. CCGE1001]
 gi|323385429|gb|ADX57519.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Burkholderia sp. CCGE1001]
          Length = 443

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +++ +DVIV+G G AG  AA V+A  GA  AL+       G +      G + +  LV 
Sbjct: 1  MSQHFDVIVVGAGPAGLHAALVSAGEGARVALLDDNPRAGGQIWRQ-GPGSVAQAPLVN 58


>gi|297526968|ref|YP_003668992.1| geranylgeranyl reductase [Staphylothermus hellenicus DSM 12710]
 gi|297255884|gb|ADI32093.1| geranylgeranyl reductase [Staphylothermus hellenicus DSM 12710]
          Length = 458

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
           YDVIV+G G AG  AA V A  G   A++  K  S IG  +C  AIG
Sbjct: 2  KYDVIVVGAGVAGLNAAFVLASRGFKVAIVESKPRSRIGDKTCGDAIG 49


>gi|282163838|ref|YP_003356223.1| putative geranylgeranyl reductase [Methanocella paludicola SANAE]
 gi|282156152|dbj|BAI61240.1| putative geranylgeranyl reductase [Methanocella paludicola SANAE]
          Length = 394

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +DV+V+G G AG  AA  AAK GA T LI         +SC   I    
Sbjct: 2  EFDVVVVGAGPAGSMAAKYAAKNGARTLLIEEHAMIGSPVSCTGHISVKA 51


>gi|307947129|ref|ZP_07662464.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseibium sp. TrichSKD4]
 gi|307770793|gb|EFO30019.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseibium sp. TrichSKD4]
          Length = 424

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVREI 62
           +DV VIGGG +G  AA + A+ G ST ++T     T    +   + +I  + K  +   +
Sbjct: 31  HDVAVIGGGPSGLTAAILLAQAGLSTLIVTPPVNVTDGRTTALWHDSINMMEKAGIWENL 90

Query: 63  DALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRT----QADRELYRLAMQREILSQEN 116
                 +   R+ D  G   R   V    A            +++L   A+  +    EN
Sbjct: 91  KPKTSEISRLRMIDDTGRLIRAPEVTFESAEIDLEAFGYNILNKDL-NAALDEKARETEN 149

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L ++      ++  ++ I  +  +     R    V   G
Sbjct: 150 LIIVHDLADQYDLTESHIQ-VTTEAGETYRAKLAVAADG 187


>gi|251796595|ref|YP_003011326.1| monooxygenase FAD-binding [Paenibacillus sp. JDR-2]
 gi|247544221|gb|ACT01240.1| monooxygenase FAD-binding [Paenibacillus sp. JDR-2]
          Length = 395

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 28/218 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYDVIV+G G +G  +A + A  G    +              P    L  G +     
Sbjct: 2   NSYDVIVVGAGPSGSASAKMLAASGVRILM----LDAEAFPRRKPCGESLNPGAVAALGR 57

Query: 64  ALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                 +    D      +   V  G A            Y +  +RE   Q +L + + 
Sbjct: 58  ITGYSHVQEAFDFTSSPIQGWKVSSGRA--SLEAVYPEGHYGVGCRRE---QVDLWLAEQ 112

Query: 123 E------------VAGFNTEKNIISSIVMQ----DNSMIRCSTVVLTTGTFLRGVIHIGK 166
                        V     E   ++ ++ +        IR S V+ + G  LR V+    
Sbjct: 113 ASRAGAVFEQRTKVERLIWEGERVAGVIARSPEGKPMSIRASLVIGSDG--LRSVVARNA 170

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
                G +  +   +  N     +        G    +
Sbjct: 171 KVNRYGSLRKAAFTARLNGVRGLNGRVELFTAGEGKVI 208


>gi|152995745|ref|YP_001340580.1| soluble pyridine nucleotide transhydrogenase [Marinomonas sp.
          MWYL1]
 gi|189046863|sp|A6VW16|STHA_MARMS RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|150836669|gb|ABR70645.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Marinomonas sp. MWYL1]
          Length = 464

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 33/66 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  R YDV+V+G G AG  AA  AAK G   A+I   +   GS +    I      H V+
Sbjct: 1  MTTRHYDVVVLGTGPAGEGAAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAVK 60

Query: 61 EIDALD 66
          EI A +
Sbjct: 61 EIIAFN 66


>gi|324992179|gb|EGC24101.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK405]
          Length = 391

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 128/417 (30%), Gaps = 66/417 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGK 166
           E L+    E+ G       I S+   D        +    C  +++TTG           
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDDLFTVRSCDQTWTCQKLIVTTGGKSYPSTGSTG 174

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                 R        L  +           K      LD  T+ + K      D     F
Sbjct: 175 FGHDIARHFKHTVTDL-EAAESPLLTDFPHKALQGISLDDVTLSYGKHVITH-DLLFTHF 232

Query: 227 SFMTDKITNRQIECGITRTNL----------ETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
                             T            +    + EN + S      I         
Sbjct: 233 GLSGPAALRLSSFVKGGETIFLDVLPQMSQQDLADFLEENREKSLKNCLKILL-----PE 287

Query: 277 SIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
            + D   + F E+       E E L   +         LP  +  +       L K  + 
Sbjct: 288 RMADFFAQPFPEKVKQLNLSEKEALIKQIKE-------LPIPVTGKM-----SLAKSFVT 335

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 336 KGGVSLKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|305664128|ref|YP_003860416.1| Thioredoxin-disulfide reductase [Ignisphaera aggregans DSM 17230]
 gi|304378697|gb|ADM28536.1| Thioredoxin-disulfide reductase [Ignisphaera aggregans DSM 17230]
          Length = 327

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 23/38 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M   SYDV++IGGG AG  AA   A+ G  TA+IT   
Sbjct: 1  MDVESYDVVIIGGGIAGFSAALYTARQGLKTAVITIDI 38


>gi|237721514|ref|ZP_04551995.1| FAD dependent oxidoreductase [Bacteroides sp. 2_2_4]
 gi|293369187|ref|ZP_06615781.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
 gi|229449310|gb|EEO55101.1| FAD dependent oxidoreductase [Bacteroides sp. 2_2_4]
 gi|292635770|gb|EFF54268.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Bacteroides ovatus SD CMC 3f]
          Length = 424

 Score = 50.7 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGL 53
           M  + YDVIV G G AG  AA  AA+ GA  AL        G +  N       P +G +
Sbjct: 1   MNTKYYDVIVAGAGPAGICAAVAAARQGARVAL----IERYGVIGGNLTAGYVGPILGSV 56

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            K  +  E+ A+ G+  +  D  G          G A        D E  +L +   +  
Sbjct: 57  SKNTMRDEVCAILGV--KDNDWIGEH--------GNAH-------DFEEAKLTLAEFVAR 99

Query: 114 QENLDVI-QGEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTFLRGVIHIGKLKI 169
           ++N+DV  Q  V+    +  ++  I    N        +  +  TG  +   +     KI
Sbjct: 100 EKNVDVFLQCCVSDVIRDGKVVKGIKCASNEGTLCFEAAVTIDCTGDAIVSFL--AGAKI 157

Query: 170 PAGRM 174
             GR 
Sbjct: 158 EKGRA 162


>gi|170681610|ref|YP_001746772.1| dihydrolipoamide dehydrogenase CglE [Escherichia coli SMS-3-5]
 gi|170519328|gb|ACB17506.1| dihydrolipoamide dehydrogenase CglE [Escherichia coli SMS-3-5]
          Length = 454

 Score = 50.7 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 15/237 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLTAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITEAGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              E + +  +++++      I    +V  TG      I          R  D     + 
Sbjct: 132 VIKEGDTLCGVIVENKSGRGAILAKRIVDCTG---DADIAARAGAPWTKRGKDQ-LMGVT 187

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
             F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 188 VMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDQMFSPYMEDIFTRAQQ 244


>gi|39935737|ref|NP_948013.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhodopseudomonas
           palustris CGA009]
 gi|39649590|emb|CAE28112.1| putative FAD-dependent monoxygenase [Rhodopseudomonas palustris
           CGA009]
          Length = 398

 Score = 50.7 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVR 60
            SYD IV+GGG AG  AA   A+ GA TALI  +        +     +I  L +  + R
Sbjct: 9   NSYDAIVVGGGPAGLTAAIALAETGAVTALIARQVPYGDNRTTALLGDSIDILDRLDVWR 68

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE--- 115
                A      R+ D  G   R   VK            D   Y +  +  ++  E   
Sbjct: 69  RCSSKAAALRSMRLVDDTGRLIRAPEVKF----ASDEIGMDAFGYNIENRALLVGLEERA 124

Query: 116 ----NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               NL     E        + +  + M+    +    VV   G
Sbjct: 125 AELSNLQRFDDEAESVVPGDDEVI-VRMRGGRTVSAKLVVGADG 167


>gi|86147006|ref|ZP_01065324.1| alkyl hydroperoxide reductase, large subunit [Vibrio sp. MED222]
 gi|85835256|gb|EAQ53396.1| alkyl hydroperoxide reductase, large subunit [Vibrio sp. MED222]
          Length = 530

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQG 122
            G +            + N     A  GP+  A  E +      EI++++   N+   + 
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEIMTEQRAANIIAAED 298

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
              G+         + ++  + +R  TV+ +TG   R     G        +      D 
Sbjct: 299 TGDGYIH-------VELESGATLRSRTVITSTGARWREMNVPGEQDYRNKGVAYCPHCDG 351

Query: 178 P 178
           P
Sbjct: 352 P 352


>gi|89896532|ref|YP_520019.1| hypothetical protein DSY3786 [Desulfitobacterium hafniense Y51]
 gi|89335980|dbj|BAE85575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 430

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 15/150 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVI++G G AG  AA +AA+ G    +          +      GG+    ++ E
Sbjct: 1   MSNKFDVIIVGAGPAGSSAAIMAAQAGLKVLV----IERGEYVGAKNMTGGMLLSQVLNE 56

Query: 62  I-----------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
           +             +      +          +  +K            R  +   +  +
Sbjct: 57  VIPEFWKEAPLQRPVVSQRIMMTSGGRSLTVDIGNRKFSEPPFNGFSVLRHEFDAWLADK 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQ 140
                 + V    V       N I  +  +
Sbjct: 117 AREAGAVLVTGTVVDDVIHAGNRIVGVKTR 146


>gi|319946214|ref|ZP_08020454.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           australis ATCC 700641]
 gi|319747596|gb|EFV99849.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           australis ATCC 700641]
          Length = 391

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 131/423 (30%), Gaps = 78/423 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD IVIGGG AG  A   ++  G +T L+         +    A  G G+ ++     
Sbjct: 2   NHYDTIVIGGGPAGMMATISSSFYGQATLLLEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             D L      GR   +   QF   ++ +     G + +   E +         SQ  + 
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIIRFFTENGVKLKV--EDHGRVFPASDRSQTIIQ 115

Query: 119 VIQGEVAGF---NTEKNIISSIVMQDN--------SMIRCSTVVLTTGTFLRGVIHIGKL 167
            +  ++A        +  ++S+   D                +++TTG            
Sbjct: 116 ALTDKIAELGGQVRCQVEVTSVKKIDGQFVIKSKDETWMADRLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   D            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHDIA--------RHFKHTITELEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G+I S       S E  ++ F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEILSLDVLPQLS-ESDLLSFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIPGLEKVN----- 333
            N  +          PE       +  G       L E+   Q +++I  L+        
Sbjct: 271 ENREKSLKNALKTMLPE--RLAEFFIQGYPEKVKQLTEKELDQLVQSIKSLKIPVTGKMS 328

Query: 334 ----IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGL 383
                +  G  +    INPK    TLE+K + GL  AG+   IN  TG      A   G 
Sbjct: 329 LAKSFVTKG-GVSLKEINPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGW 383

Query: 384 VAG 386
           VAG
Sbjct: 384 VAG 386


>gi|288957490|ref|YP_003447831.1| electron transfer flavoprotein-quinone oxidoreductase [Azospirillum
           sp. B510]
 gi|288909798|dbj|BAI71287.1| electron transfer flavoprotein-quinone oxidoreductase [Azospirillum
           sp. B510]
          Length = 433

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 37/177 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           +   +D IVIG G +G  A    A  G                     +  H+   I   
Sbjct: 1   MVEKFDAIVIGAGPSGNAATYTLASRGLKVLQLERGEYPGAKNVQGGIMYAHELEKIIPD 60

Query: 45  SCNPAIGGLGKGHLVREIDAL----DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
             +         H++ E        D  +G        +    N  K       R   D+
Sbjct: 61  FRDDCPTER---HII-EQRVWLLGDDNYVG-----TNYRSEAFNSDKPNRYTIIRANIDK 111

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                     I     L + +  V     +    +  +   ++   I    V++  G
Sbjct: 112 -----WWGERIRKVGGLQICETTVTELIRDPSGKVIGVRTDREGGEILADVVIMADG 163


>gi|169334392|ref|ZP_02861585.1| hypothetical protein ANASTE_00792 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259109|gb|EDS73075.1| hypothetical protein ANASTE_00792 [Anaerofustis stercorihominis DSM
           17244]
          Length = 413

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 27/175 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
           M N+  DVI+IGGG +G  AA  + + G    L                I G G+ ++  
Sbjct: 1   MTNKK-DVIIIGGGASGLMAAISSLECGKKVTL----IEKNEKAGKKIYITGKGRCNVTN 55

Query: 60  -REIDALDGLMGRVADAAGIQFRV--------LNVKKGPAVRGPRTQADREL----YRLA 106
            ++I      + +  +                L    G   +  R   DR          
Sbjct: 56  NKDISEFFDHIMKNKEFLYSALYTFDNTRLLELLHSNGLKTKVERG--DRVFPVSDKASD 113

Query: 107 MQREILSQENLD-----VIQGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTG 155
           + + +L+  N D     +    V      E N    +++ D+  +    V+L TG
Sbjct: 114 VTKTLLNIINTDKNSEILYNTTVKDIIVNENNEAQGVILDDSKKLYADNVILATG 168


>gi|256851045|ref|ZP_05556434.1| succinate dehydrogenase [Lactobacillus jensenii 27-2-CHN]
 gi|260661257|ref|ZP_05862171.1| succinate dehydrogenase [Lactobacillus jensenii 115-3-CHN]
 gi|282934806|ref|ZP_06340041.1| putative fumarate reductase [Lactobacillus jensenii 208-1]
 gi|256616107|gb|EEU21295.1| succinate dehydrogenase [Lactobacillus jensenii 27-2-CHN]
 gi|260548194|gb|EEX24170.1| succinate dehydrogenase [Lactobacillus jensenii 115-3-CHN]
 gi|281301116|gb|EFA93425.1| putative fumarate reductase [Lactobacillus jensenii 208-1]
          Length = 488

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +YD+IV+G G +G  AA  AA+ G   AL+  K    G        G  G      E+ 
Sbjct: 2  ENYDLIVVGAGSSGISAALTAAEAGLKVALLE-KGDKFGGAG---MFGAQGLFGANTELQ 57

Query: 64 ALDGLMGRVADA 75
             G+   V DA
Sbjct: 58 KESGVDYSVKDA 69


>gi|28211000|ref|NP_781944.1| NAD(FAD)-utilizing dehydrogenase [Clostridium tetani E88]
 gi|28203439|gb|AAO35881.1| NAD(FAD)-utilizing dehydrogenase [Clostridium tetani E88]
          Length = 408

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 126/407 (30%), Gaps = 64/407 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           V+VIGGG AG  AA  AA       L          +     I G G+ ++  + D  D 
Sbjct: 4   VVVIGGGPAGMMAAITAANK-CKVLL----IEKNEKLGKKLFITGKGRCNVTNKKDISDF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGP--AVRGPRT--QADRELYRLAMQRE 110
                         +    +   I+F   N +  P    RG R    +D+    +    +
Sbjct: 59  FDYIPGNPEFLYSSLYTFTNENTIEF--FNSRNTPLKIERGDRVFPSSDKSSDIIKTLEK 116

Query: 111 ILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----G 165
            L+ + + ++    V     + + + S+++++   ++    ++ TG              
Sbjct: 117 ELNDKGVKIMLNTSVKDIKIKNDGVHSVILKNGLELQGDYFIIATGGASYPQTGSTGDGY 176

Query: 166 KLKIPAGRMGDSPSNSL---------FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
           K    AG    +   +L           +          LK       +      +    
Sbjct: 177 KFASKAGHRIITIKPALVPLEIKNQWVKNLQGLSLKNVELKIINNKSKELYKDFGEMLFT 236

Query: 217 QFADERLIPFSFMTDKITNRQIECGIT----RTNLETHRIIMENIKH--SAIYSGDIKSY 270
            F     I  S       N      +      T+ E  + I ++     +  +   +   
Sbjct: 237 HFGISGPIVLSASRYVKENEPQYAVLNLKPALTSEELDKRIQKDFSKYINKDFRNSLNDL 296

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF--IRTIPG 328
            P+    I  ++    E        +     T     N     L + ++ +    R+I  
Sbjct: 297 LPKKLIDIIVELSNIPED-------KKVNSITKEERKN--LCNLIQNLKMEIKGFRSIK- 346

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
             +  I   G  I  D INP      +++K I  L+ AG++    GY
Sbjct: 347 --EAIITSGGVHI--DEINP----SNMQSKIIPNLYFAGEVIDVDGY 385


>gi|148978074|ref|ZP_01814621.1| alkyl hydroperoxide reductase, large subunit [Vibrionales bacterium
           SWAT-3]
 gi|145962758|gb|EDK28032.1| alkyl hydroperoxide reductase, large subunit [Vibrionales bacterium
           SWAT-3]
          Length = 530

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQG 122
            G +            + N     A  GP+  A  E +      E+++++   N+   + 
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEVMTEQRAANIIAAED 298

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
              G+         + ++  + +R  TV+ +TG   R     G        +      D 
Sbjct: 299 TEDGYIH-------VELESGATLRARTVITSTGARWREMNVTGEQEYRNKGVAYCPHCDG 351

Query: 178 P 178
           P
Sbjct: 352 P 352


>gi|253569414|ref|ZP_04846824.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. 1_1_6]
 gi|251841433|gb|EES69514.1| alkyl hydroperoxide reductase subunit F [Bacteroides sp. 1_1_6]
          Length = 517

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 47/271 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D    R   + E+  ++ L      
Sbjct: 263 TTGS---ELADNLKTHL-------------LRYPVDLLEQRKIEKVELAGKDKL------ 300

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +            +++ TG   R  +++       GR      +   
Sbjct: 301 -------------VTTSVGEKFIAPALIIATGASWR-KLNVPGENDYIGRGVAFCPHCDG 346

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  K     G   +G  A +D   I   K       + L   + + +++  + +    
Sbjct: 347 PFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADNVLQERL--KSLPNVE 403

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              + +T  +I    K +A+   D K+   R
Sbjct: 404 VFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|218265721|ref|ZP_03478851.1| hypothetical protein PRABACTJOHN_04562 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221430|gb|EEC94080.1| hypothetical protein PRABACTJOHN_04562 [Parabacteroides johnsonii
           DSM 18315]
          Length = 594

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 107/348 (30%), Gaps = 67/348 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++++GG   G  AA  AA++G  + +          +   PA G        R   A
Sbjct: 22  SYDLVIVGGNPGGIMAAISAARMGKKSVI----LERTRYVGGLPANGLGATDIATR--AA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----RLAMQREILSQEN--- 116
             GL     DA    +       GPA    +  +D   +         Q+ +  Q++   
Sbjct: 76  TTGLFREFVDAVKQHYI---DTYGPASEQVKVCSDGYHFEPSVGARIFQKMLDGQKDKIT 132

Query: 117 -LDVIQ--GEVAGFNTEKNIISSIVM----------QDNSMIRCSTVVLTTGTFLR---- 159
            L + Q   E        N I  I +             S+   +T     G        
Sbjct: 133 VLTMRQFDAEDENIVMRDNRIEKIRILNRETGEMEEYTGSVFLDATYEGDLGAAAGVPFR 192

Query: 160 ----GVIHIGK------LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
               G    G+       K   G  GD  +    N+   +++               K  
Sbjct: 193 VGREGKDEFGEPGAGRVYKYWGGPEGDGSTFKKDNAVQSYNYRLCLTNNPANRVAFTKPA 252

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            +++ +           S + D  T R  +  + R   E      EN KH        K 
Sbjct: 253 RYNRED---------YASIVEDVWTGRNTDAAMQRVTPEMME---ENRKHIK-AGNPSKL 299

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
            G ++  +    IV       H   ++ +  N   V+    ST LPEE
Sbjct: 300 PGDKWGIAKITNIV-------HVPNMKTDANNQHGVFV---STDLPEE 337


>gi|297583492|ref|YP_003699272.1| geranylgeranyl reductase [Bacillus selenitireducens MLS10]
 gi|297141949|gb|ADH98706.1| geranylgeranyl reductase [Bacillus selenitireducens MLS10]
          Length = 431

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 28/172 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------- 53
           +   +D+IV+G G AG  AA  AAK G    L                +GG+        
Sbjct: 1   MPEKFDLIVVGAGPAGTSAAYTAAKNGLDVLL----IERGEFPGSKNVMGGILYRKQMED 56

Query: 54  ------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRL 105
                  +  L R +                 ++ L+  K P       R++ D+     
Sbjct: 57  VIPEFWKEAPLERPVVEQRFWFLDKESMVTTSYKGLDWGKEPYNKFTVLRSKFDKWFADK 116

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIRCSTVVLTTG 155
           A+      Q  L V +  V     E   +  +     D  +     V+L  G
Sbjct: 117 AV-----EQGALLVNETVVTECIVENGKVVGVRTDRPDGDVY-ADVVILADG 162


>gi|282896317|ref|ZP_06304339.1| geranylgeranyl reductase [Raphidiopsis brookii D9]
 gi|281198813|gb|EFA73692.1| geranylgeranyl reductase [Raphidiopsis brookii D9]
          Length = 404

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVIV G G AG  AA VAAK G   ALI
Sbjct: 3  NYDVIVCGAGPAGTTAAWVAAKTGLKVALI 32


>gi|204927368|ref|ZP_03218570.1| protein FixC [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204324033|gb|EDZ09228.1| protein FixC [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 428

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGNVVGVE-ADGDILEAKVVILADG 161


>gi|46359651|dbj|BAD15330.1| squalene epoxidase [Panax ginseng]
          Length = 536

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I         I      P     +  LG    V
Sbjct: 73  DVIIVGAGVAGSALAYTLAKDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCV 132

Query: 60  REIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA    G    + D    +      K    V G      R  +   M+ +  S  N+
Sbjct: 133 NEIDAQRVFGYALYM-DGKNTRLSYPLEKFHSDVAGRSFHNGR--FVQRMREKAASLPNV 189

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     +K  +  +    +D   +  
Sbjct: 190 RMEQGTVTSLVEKKASVKGVQYKTKDGQELSA 221


>gi|168234829|ref|ZP_02659887.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734230|ref|YP_002113093.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194709732|gb|ACF88953.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291689|gb|EDY31039.1| protein FixC [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 428

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGNVVGVE-ADGDILEAKVVILADG 161


>gi|299821651|ref|ZP_07053539.1| pyridine nucleotide-disulfide oxidoreductase [Listeria grayi DSM
           20601]
 gi|299817316|gb|EFI84552.1| pyridine nucleotide-disulfide oxidoreductase [Listeria grayi DSM
           20601]
          Length = 447

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL--- 58
            +  YDVIVIGGG +G  AA  AA       L+         +     + G G+ ++   
Sbjct: 19  YDMDYDVIVIGGGPSGLMAAISAASHNKKVLLV----EKGPKLGRKLILSGGGRCNVTNR 74

Query: 59  --VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----------RL 105
             V EI       GR   +A   F   ++       G   + +                 
Sbjct: 75  LPVEEIIRHIPGNGRFLYSAFHDFDNESIIAFFEGLGVALKEEDHGRMFPVSNSARSVAE 134

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           AM  ++   +    ++ +VA    E   ++ I ++D   I    V++  G
Sbjct: 135 AMITQLEKYQVDIFMKTKVAKVRYEAEKVAGIQLEDGKEISAPAVIIAVG 184


>gi|225174839|ref|ZP_03728836.1| glucose-inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
 gi|225169479|gb|EEG78276.1| glucose-inhibited division protein A [Dethiobacter alkaliphilus AHT
           1]
          Length = 422

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 320 HQFIRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQING-T 372
              ++ IPGL +   + P YA      I +  + P+     L+   +  LF AG+  G  
Sbjct: 271 LDLLQQIPGLSQARYVDP-YAGGMGNSIRFTAVAPR--DNRLKVDGLDNLFCAGEKAGFL 327

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAE 432
            G+ EA   G +AG N+A KS+    +    + +  G +I         E  RM      
Sbjct: 328 VGHTEAVVTGSLAGFNAAAKSDGAKLLTLPDSLA-CGDIIAYSNPNRQKERPRMQ----- 381

Query: 433 YRISLRPDNADNRLTPIGMKL-------GCIGER 459
            RI+        R+   G+ L       G + E 
Sbjct: 382 -RITFSGAEYFARMQKRGLYLTDRDTVQGLVKEA 414


>gi|254447443|ref|ZP_05060909.1| dihydrolipoyl dehydrogenase [gamma proteobacterium HTCC5015]
 gi|198262786|gb|EDY87065.1| dihydrolipoyl dehydrogenase [gamma proteobacterium HTCC5015]
          Length = 485

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDVIVIGGG AG E+A   A+LG +TA++             P +GG 
Sbjct: 3  MSEQYDVIVIGGGPAGYESAIRCAQLGLNTAVVEQWLGK----DEKPKLGGT 50


>gi|153826636|ref|ZP_01979303.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739574|gb|EDM53798.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 398

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAILQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|15640112|ref|NP_229739.1| hypothetical protein VC0080 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587648|ref|ZP_01677411.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121727773|ref|ZP_01680849.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|153818201|ref|ZP_01970868.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822145|ref|ZP_01974812.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227080316|ref|YP_002808867.1| hypothetical protein VCM66_0080 [Vibrio cholerae M66-2]
 gi|254851466|ref|ZP_05240816.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298501144|ref|ZP_07010944.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9654477|gb|AAF93258.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548089|gb|EAX58164.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629897|gb|EAX62309.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126511230|gb|EAZ73824.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520351|gb|EAZ77574.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227008204|gb|ACP04416.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|254847171|gb|EET25585.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297540178|gb|EFH76239.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 398

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|223982682|ref|ZP_03632914.1| hypothetical protein HOLDEFILI_00188 [Holdemania filiformis DSM
           12042]
 gi|223965381|gb|EEF69661.1| hypothetical protein HOLDEFILI_00188 [Holdemania filiformis DSM
           12042]
          Length = 305

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 81/285 (28%), Gaps = 64/285 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDVI+IG G AG  AA  A++ G  TA++                   GK     E
Sbjct: 1   MDLQYDVIIIGAGPAGMTAAVYASRAGLKTAMLE-------------KAAPGGKMIKTFE 47

Query: 62  IDALDGLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           I    G+     AD A   F                 A+  LY                 
Sbjct: 48  IQNWPGIKEINGADLAYQMFE----------HSTHFGAE-YLY----------------- 79

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-------------GVIHIGKL 167
            G+V         I  +V  D  +     V++ TGT  R             GV +    
Sbjct: 80  -GDVEKIIDGP--IKQVVCADGQIYTAPAVIIATGTRERLLGIPNEKELTGKGVSYCAVC 136

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                R          NS ++      +  +     +       +   +Q  ++      
Sbjct: 137 DGSFFRDQPVTVIGGGNSALEESLYLTQFASEVHIVIRRDVFRAEPIIQQAIEQNPKI-- 194

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
                I    +   I     +   I+++N+        + K+  P
Sbjct: 195 ----DIIRSHVPVEILEQEGKVGGIVLKNVHDGQRMKLETKAVFP 235


>gi|253795592|ref|YP_003038688.1| putative FAD dependent oxidoreductase [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739900|gb|ACT34235.1| putative FAD dependent oxidoreductase [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 503

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           YDV+++G G +G  A+   AKL  G   A+         S+  +   G + +G+  RE  
Sbjct: 2   YDVVIVGAGPSGLAASLKLAKLAKGIKVAV----LEKASSVGGHLVSGAILEGYAYREHV 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVR-GPRT-------QADRELYRLAMQREILSQE 115
               L    A  +   + + N          PR          D       M RE  +  
Sbjct: 58  EARKLKSATAVVSDSTWHMTNTTHTDVSWLTPRALSNADNVLVDVAELCQHMSREAETLG 117

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
              + +  V+        +  + +   + +     +L  G 
Sbjct: 118 VNVITRCAVSDVIMAGGSVVGVALASGAKVASKHTMLAEGA 158


>gi|114769729|ref|ZP_01447339.1| L-aspartate oxidase [alpha proteobacterium HTCC2255]
 gi|114549434|gb|EAU52316.1| L-aspartate oxidase [alpha proteobacterium HTCC2255]
          Length = 516

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 40/193 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI--GSMSCNPAIGGLGKGHL 58
           M  + ++V++IG G AG  AA   A    S  +I+ K       S      +      H 
Sbjct: 1   MKEKQHNVLIIGAGLAGLYAALNLAPR--SVTIISPKPLGFDASSAWAQGGVAAAMDEHD 58

Query: 59  VREIDALDGLMG----------------------RVADAAGIQFRVLN----VKKGPA-- 90
             E  A D +M                        +AD      R+ N    + K  A  
Sbjct: 59  TPEAHANDTVMAGDGIVDADIATFVTSAAKEHVLELADVGTPFDRLGNGDFLMSKEAAHS 118

Query: 91  -VRGPRTQADRE--LYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS--- 143
             R  R + D+        + +E+L+  ++ V+QG        + N +  +V+ +     
Sbjct: 119 FARVVRVKGDQAGAAIMRTLVKEVLNTPSITVMQGVTALDLIVKNNEMCGVVLANGENDP 178

Query: 144 -MIRCSTVVLTTG 155
            +I+    ++  G
Sbjct: 179 FVIQAKAYLMAAG 191


>gi|332702067|ref|ZP_08422155.1| geranylgeranyl reductase [Desulfovibrio africanus str. Walvis
          Bay]
 gi|332552216|gb|EGJ49260.1| geranylgeranyl reductase [Desulfovibrio africanus str. Walvis
          Bay]
          Length = 387

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD+IVIG G AG  AA  AA+ G  T L+             P     G G  +R +DAL
Sbjct: 2  YDLIVIGAGPAGSMAARQAAQSGLKTLLL--DKDQF------PRAKPCGGGLTLRALDAL 53

Query: 66 DGLMGRV 72
            +  R+
Sbjct: 54 ASVGLRL 60


>gi|220919055|ref|YP_002494359.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956909|gb|ACL67293.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 476

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+              A  G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV----EKEAVPGGASANTGTIPSKALRE-TA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L     R  DA GI+ RV      P + G R       +     R  L+   +++ +G  
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSR--IRSALNHAGVEMFRGIA 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +  +     +S +       +    V+L TGT      H  +  I   R+ DS S  + +
Sbjct: 116 SFVDPHTIRVS-VPDGGQQDLHAEVVLLATGTRP---FHPPQYSIDNARVYDSDSILMLD 171

Query: 185 SFMKFDFDTGRLKTGT 200
              +     G    G 
Sbjct: 172 RIPRSLAILGGGVAGC 187


>gi|282900573|ref|ZP_06308515.1| geranylgeranyl reductase [Cylindrospermopsis raciborskii CS-505]
 gi|281194373|gb|EFA69328.1| geranylgeranyl reductase [Cylindrospermopsis raciborskii CS-505]
          Length = 404

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVIV G G AG  AA +AAK G   ALI
Sbjct: 3  NYDVIVCGAGPAGTTAAWMAAKTGLKVALI 32


>gi|326795830|ref|YP_004313650.1| Soluble pyridine nucleotide transhydrogenase [Marinomonas
          mediterranea MMB-1]
 gi|326546594|gb|ADZ91814.1| Soluble pyridine nucleotide transhydrogenase [Marinomonas
          mediterranea MMB-1]
          Length = 464

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  R YDV+V+G G AG  AA  AAK G   A++       GS +    I      H V+
Sbjct: 1  MTTRHYDVVVLGTGPAGEGAAMNAAKAGKRVAVVEASPKVGGSCTHLGTIPSKALRHAVK 60

Query: 61 EIDALD 66
          EI A +
Sbjct: 61 EIIAFN 66


>gi|154173839|ref|YP_001408895.1| flavocytochrome c flavin subunit [Campylobacter curvus 525.92]
 gi|112802089|gb|EAT99433.1| flavocytochrome c flavin subunit [Campylobacter curvus 525.92]
          Length = 518

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           +  YDVIVIG G AG  A   A K G    ++      +G    N  I
Sbjct: 40 FDEEYDVIVIGSGFAGSMATLQALKRGLKVLMV----EKMGRAGGNSVI 84


>gi|73667722|ref|YP_303737.1| bacteriochlorophyll synthase [Methanosarcina barkeri str. Fusaro]
 gi|72394884|gb|AAZ69157.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase [Methanosarcina
           barkeri str. Fusaro]
          Length = 396

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREI- 62
           SYDV+++G G AG  +A  AAK GAS  L+  K      + C   +    +   L+ E  
Sbjct: 6   SYDVVIVGAGPAGSTSALYAAKNGASVLLLDKKREIGSPIQCAGFLPDASEVQALLHEAR 65

Query: 63  ------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                 +  D  + +  D   I     N+ K  AV+G     DR  Y   +  +      
Sbjct: 66  LPDTLKNYPDSCVLQRIDTQRIVTPNCNI-KEFAVKG--AVLDRRRYDQFLAEQATIAGA 122

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +I+  V          S +  +    I+   ++   G
Sbjct: 123 ELMIKTRVTKIEGTTVETSGVFGK--YKIKAKAIIGADG 159


>gi|56421207|ref|YP_148525.1| succinate dehydrogenase flavoprotein subunit [Geobacillus
           kaustophilus HTA426]
 gi|56381049|dbj|BAD76957.1| succinate dehydrogenase (flavoprotein subunit) [Geobacillus
           kaustophilus HTA426]
          Length = 585

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 107/616 (17%), Positives = 181/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +                 +G+ I    T     
Sbjct: 186 AFPADAVILATGGPGIIFGKS--TNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRIW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELDVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNKLD--CICFSRT----------------DSYIGVMIDDLTSK 418
            A   G+VAG N+ R    L+        T                 +  G     +  K
Sbjct: 394 SAIYGGMVAGPNAVRYIRGLEKSADAMPSTLYDSYVKREQEKWENILAMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      R   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDRLLKTDEKIQELMERYKNISVTDTSRWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYHRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPAFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     Y+ ++  
Sbjct: 568 SLIKPRKRDYSKKKEE 583


>gi|312110008|ref|YP_003988324.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. Y4.1MC1]
 gi|311215109|gb|ADP73713.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. Y4.1MC1]
          Length = 585

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 104/616 (16%), Positives = 182/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EV G  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVEGLVTKYEGWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 AFPADAVIMATGGPGVIFGKS--TNSIINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E++ +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELEVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLTSK 418
            A   G+VAG ++ R                       +   ++   S  G     +  K
Sbjct: 394 SAIYGGMVAGPSAVRYIRGLEKSADAMPSSLYDRYVKQEEERWNNILSMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      +   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDKLLKTDEKIQELLERYKNISVTDTSKWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYNRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPAFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     YT ++  
Sbjct: 568 SLIKPRKRDYTKKKEE 583


>gi|157150651|ref|YP_001449548.1| hypothetical protein SGO_0229 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075445|gb|ABV10128.1| conserved hypothetical protein TIGR00275 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 391

 Score = 50.3 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 127/417 (30%), Gaps = 66/417 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    D
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGD 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++         + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENSVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGK 166
           E L+    E+ G       I S+   D        N    C  +++TTG           
Sbjct: 115 EALEKKIAELGGTVITNTEIISVKKTDDLFTVRSSNQTWTCQKLIVTTGGKSYPSTGSTG 174

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                 R        L  +           K      LD  T+ + K      D     F
Sbjct: 175 FGHDIARHFKHTVTDL-EAAESPLLTDFPHKALQGISLDDVTLSYGKHVITH-DLLFTHF 232

Query: 227 SFMTDKITNRQIECGITRT----------NLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
                             T            +    + EN + S      I         
Sbjct: 233 GLSGPAALRLSSFVKGGETIYLDVLPQMSQQDLADFLEENREKSLKNCLKILL-----PE 287

Query: 277 SIEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
            + D   + F E+       E E L   +         LP  +  +       L K  + 
Sbjct: 288 RMADFFAQPFPEKVKQLNLSEKEALIKQIKE-------LPIPVTGKM-----SLAKSFVT 335

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 336 KGGVSLKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|126458753|ref|YP_001055031.1| FAD dependent oxidoreductase [Pyrobaculum calidifontis JCM 11548]
 gi|126248474|gb|ABO07565.1| FAD dependent oxidoreductase [Pyrobaculum calidifontis JCM 11548]
          Length = 484

 Score = 50.3 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 140/473 (29%), Gaps = 96/473 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKL-GASTAL-------------ITHKTSTIG---SMSCN 47
            YDV+++G G AG  AA   AK  G   AL             +                
Sbjct: 21  DYDVVIVGAGPAGLFAALELAKAGGLRVALVDGGYRASQRHCPLQTPLEKCTFCVPCHIM 80

Query: 48  PAIGGLGK-------------GHLVREIDALDGLMGRV--ADAAGIQFRVLNVKKGPAVR 92
             IGG G              G L   +   D  M  +   D   ++F   +    P + 
Sbjct: 81  YGIGGAGTLSSGLINLRPDVGGDLHELVGDWDKAMELINYVDKTFVEFGAPDKVYEPQME 140

Query: 93  -GPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCST 149
              +  A        +          D  +  V       E   ++ +       +    
Sbjct: 141 LIGKLSAIAARVNARIVPIRQRHMGTDGARAVVENMTKFLEGAGVAVMYATWALEVEKGG 200

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD--FDTGRLKTG-------- 199
             L T    RGV++   + +  GR     +  L     +     D G +  G        
Sbjct: 201 NGLFTVKTTRGVLNARAVLLAPGR---GGAEWLVAQLKRLGASLDFGPIDIGVRVEVPYH 257

Query: 200 -----TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI----------ECGITR 244
                T A  D K I++        D+++  F         +++          E  + R
Sbjct: 258 VMKPLTDAVHDPKVILYTS----KYDDKVRTFCTNPRGFVVKEVYSDGTVGVNGETYLER 313

Query: 245 TNLETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ--IFLE 296
            +  T+   +      + ++ +  +   I     +        I R  +    Q   +  
Sbjct: 314 KSENTNFAFLVTLRLTDPMEDTIEFGKSIARLATKLGGGKP-LIQRLYDLERGQRSTWDR 372

Query: 297 P----EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA----------IE 342
                       V P  IS ALP  I       I GL+K++ + PG A          I+
Sbjct: 373 IRRSSISPTLKDVTPGDISLALPHRIVEDI---IEGLKKLDELAPGVASPQTLIYAPEIK 429

Query: 343 YDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKSN 394
           Y    P      L T  + GLF+AG   G + G   AAA G++A         
Sbjct: 430 YYSARPTV-DKNLMT-TVPGLFVAGDGAGLSRGINVAAATGVLAARGILLYLQ 480


>gi|281212326|gb|EFA86486.1| putative CMF receptor CMFR1 [Polysphondylium pallidum PN500]
          Length = 514

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 38/182 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLV 59
           +  YDV VIG G +G   +   A+ G   A++  K           C  A+  + +  L 
Sbjct: 77  DEIYDVAVIGAGPSGSTLSYYLAREGRKVAVLEKKKFPRDKF----CGDAVATMAQDIL- 131

Query: 60  REIDALDGLMGRVADAAGIQF-----------------------RVLNVKKGPAVRGPRT 96
           RE+    G+M  + D     F                       R     +G  +   R 
Sbjct: 132 REM----GVMKELVDEDLGHFAQNGGFVSPNGNSFIGNSAKEMARDAKYNRGAVIAVKRI 187

Query: 97  QADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTT 154
             D ++ + A +      EN  V Q      NT    +  +  +DN   + R   +V   
Sbjct: 188 YLDEKIAKAAKRMGAELYENTTV-QTCKFDRNTGLWTVECVGSEDNQPIVYRARCLVCAD 246

Query: 155 GT 156
           G+
Sbjct: 247 GS 248


>gi|254471409|ref|ZP_05084811.1| FAD dependent oxidoreductase [Pseudovibrio sp. JE062]
 gi|211959555|gb|EEA94753.1| FAD dependent oxidoreductase [Pseudovibrio sp. JE062]
          Length = 450

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 18/235 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V GGG +G  AA ++A+ G  T LI               + G   G  + + D  +
Sbjct: 21  DVVVCGGGPSGVAAAVMSARNGLKTILIEKN--GFCGGGAVAGLSGTICGLFLTQDDIEN 78

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVR------GPRTQADRELYRLAMQREILSQENLDVI 120
               ++      +FR     KG A              D  ++R A    +       + 
Sbjct: 79  KDAKQIVFGFAEEFRARLQAKGGATPPQIYGNTHVVTFDPLIWREAADDLLEESGVQCLY 138

Query: 121 QGEVAGFNTEKNIISS--IVMQDNSMI-RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD- 176
              +     E + I++  +  +  S   +    + T+G     ++         G  G  
Sbjct: 139 HTYMTEVVREGDEITAIRVESKAGSTFLKAKAFIDTSGD--AALVTKAGCDYSFGDNGAI 196

Query: 177 ---SPSNSLFNSFMKFDFDTGRLKTGTPA-RLDGKTIIWDKTEKQFADERLIPFS 227
              +    L +      +D     T  P   ++     ++  E      ++  F 
Sbjct: 197 QNPTMIFRLSDVVESDFYDYFGKNTICPPDMIEKLKTAFESREYDTPRNKVWVFP 251


>gi|28198664|ref|NP_778978.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa Temecula1]
 gi|182681353|ref|YP_001829513.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa M23]
 gi|28056755|gb|AAO28627.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa Temecula1]
 gi|182631463|gb|ACB92239.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa M23]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV+VIG G AG  AA  AA+LG   A +       G     PA+GG 
Sbjct: 1  MSEHYDVVVIGAGPAGYHAAIRAAQLGLKVACVDAALGKDG----KPALGGT 48


>gi|15838149|ref|NP_298837.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa 9a5c]
 gi|9106589|gb|AAF84357.1|AE003984_8 dihydrolipoamide dehydrogenase [Xylella fastidiosa 9a5c]
          Length = 490

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV+VIG G AG  AA  AA+LG   A +       G     PA+GG 
Sbjct: 13 MSEHYDVVVIGAGPAGYHAAIRAAQLGLKVACVDAALGKDG----KPALGGT 60


>gi|71274694|ref|ZP_00650982.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Dixon]
 gi|71900678|ref|ZP_00682802.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Ann-1]
 gi|170730068|ref|YP_001775501.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa M12]
 gi|71164426|gb|EAO14140.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Dixon]
 gi|71729557|gb|EAO31664.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Ann-1]
 gi|167964861|gb|ACA11871.1| dihydrolipoamide dehydrogenase [Xylella fastidiosa M12]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV+VIG G AG  AA  AA+LG   A +       G     PA+GG 
Sbjct: 1  MSEHYDVVVIGAGPAGYHAAIRAAQLGLKVACVDAALGKDG----KPALGGT 48


>gi|71900956|ref|ZP_00683069.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Ann-1]
 gi|71729261|gb|EAO31379.1| Dihydrolipoamide dehydrogenase [Xylella fastidiosa Ann-1]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV+VIG G AG  AA  AA+LG   A +       G     PA+GG 
Sbjct: 1  MSEHYDVVVIGAGPAGYHAAIRAAQLGLKVACVDAALGKDG----KPALGGT 48


>gi|197124281|ref|YP_002136232.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter sp.
           K]
 gi|196174130|gb|ACG75103.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Anaeromyxobacter sp. K]
          Length = 476

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+              A  G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV----EKEAVPGGASANTGTIPSKALRE-TA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L     R  DA GI+ RV      P + G R       +     R  L+   +++ +G  
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSR--IRSALNHAGVEMFRGIA 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +  +     ++ +       +    V+L TGT      H  +  I   R+ DS S  + +
Sbjct: 116 SFVDPHTIRVA-VPDGGQQDLHAEVVLLATGTRP---FHPPQYSIDNARVYDSDSILMLD 171

Query: 185 SFMKFDFDTGRLKTGT 200
              +     G    G 
Sbjct: 172 RIPRSLAILGGGVAGC 187


>gi|16519981|ref|NP_444101.1| nitrogen fixation protein FixC; flavoprotein-ubiquinone
           oxidoreductase [Sinorhizobium fredii NGR234]
 gi|2498382|sp|Q53208|FIXC_RHISN RecName: Full=Protein fixC
 gi|1486437|emb|CAA92415.1| FixC homologue [Rhizobium sp.]
 gi|2182667|gb|AAB91888.1| nitrogen fixation protein FixC; flavoprotein-ubiquinone
           oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 435

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G                     L  +   TI  
Sbjct: 1   MTEERFDAIVVGAGMSGNAAAYTMASRGLKVLQLERGEYPGSKNVQGAILYANMLETIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
              + A       HLV E       +       G+ +R  +  + PA    R    R  +
Sbjct: 61  DFRDDAPLER---HLV-EQRFW---VTDDTSHTGMHYRSDDFNE-PAP--NRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGF-NTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
                R++ +   + + +  V          +  +       +I    VVL  G
Sbjct: 111 DKWFSRKVRAAGAIVLCETTVTELALDAAGKVIGVHTDRAGGVIHADVVVLAEG 164


>gi|116492248|ref|YP_803983.1| thioredoxin reductase [Pediococcus pentosaceus ATCC 25745]
 gi|116102398|gb|ABJ67541.1| Thioredoxin reductase [Pediococcus pentosaceus ATCC 25745]
          Length = 308

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV++IG G AG  AA  A++   S  ++                          +
Sbjct: 1   MTKQYDVVIIGAGPAGMTAALYASRANLSVVML--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   AD       + N     +V GP    D          E           
Sbjct: 35  RGIYGGQMNNTAD-------IENFPGFKSVLGPDLSKDMYESSTQFGAEYAY-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G V     +      +            V++ TG+
Sbjct: 80  GSVESIRDDGAT-KLVKTDMGDEFEAKVVIIGTGS 113


>gi|300938975|ref|ZP_07153674.1| FAD dependent oxidoreductase [Escherichia coli MS 21-1]
 gi|300456113|gb|EFK19606.1| FAD dependent oxidoreductase [Escherichia coli MS 21-1]
          Length = 429

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP--RTQADRELYRLAMQREILSQENLD 118
           E            +    + ++  + K  AV     R Q+D  + + A    + ++ +  
Sbjct: 56  EAIIPGFAASAPVERKVTREKISFLTKESAVTLDFHREQSD--VPQHASYTVLRNRLDPW 113

Query: 119 VIQGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +++              V     E N ++ +   D  ++  + V+L  G
Sbjct: 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DVLEANVVILADG 161


>gi|289670112|ref|ZP_06491187.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 48


>gi|289663041|ref|ZP_06484622.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          vasculorum NCPPB702]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 48


>gi|258645938|ref|ZP_05733407.1| pyridine nucleotide-disulfide oxidoreductase [Dialister invisus DSM
           15470]
 gi|260403307|gb|EEW96854.1| pyridine nucleotide-disulfide oxidoreductase [Dialister invisus DSM
           15470]
          Length = 419

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IGGG AG  AA  AA  GA   L   K   +G       I G G+ +L      +D 
Sbjct: 8   VAIIGGGVAGLLAAVTAADHGAKVLLFE-KMDKVGL---KMGITGKGRCNLTNNAPIMDF 63

Query: 68  LM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----------RLAMQREIL 112
           +      GR   +A  +F  +++       G  T+ +R                +   +L
Sbjct: 64  IAMTPGNGRFLFSAYKRFNNMDLLSLFHTWGLETKVERGGRIFPASDDAQEVRHLFMRLL 123

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            ++ +DV   E V    T+K   + +V           V+L TG
Sbjct: 124 HEKQVDVHLSEPVFHIQTKKGCAAGVVTGKG-TYEADAVILATG 166


>gi|166711494|ref|ZP_02242701.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzicola
          BLS256]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 48


>gi|58426259|gb|AAW75296.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          KACC10331]
          Length = 525

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 48 MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 95


>gi|84623580|ref|YP_450952.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
 gi|161898996|ref|YP_200681.2| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|188577097|ref|YP_001914026.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          PXO99A]
 gi|84367520|dbj|BAE68678.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
 gi|188521549|gb|ACD59494.1| dihydrolipoamide dehydrogenase [Xanthomonas oryzae pv. oryzae
          PXO99A]
          Length = 478

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 48


>gi|154317535|ref|XP_001558087.1| hypothetical protein BC1G_03119 [Botryotinia fuckeliana B05.10]
 gi|150844293|gb|EDN19486.1| hypothetical protein BC1G_03119 [Botryotinia fuckeliana B05.10]
          Length = 627

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIG G AG   A   A+ G    ++  + S+  +      +       L + +   D 
Sbjct: 7   VTVIGAGPAGLMLACTLARYGIQVTILDDRPSSTAT-GRADGLQPKTIETLKQ-LGLADS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAG 126
           L+       G++ ++ N +K  A       A    Y   +   +    NL +I QG +  
Sbjct: 65  LL-----ERGVKVKINNEQKSTADEKLHRTAREIHYPKDIVDLLD--PNLLLIHQGMIED 117

Query: 127 FNTEKNIISSIVMQDNSMI 145
              +   +  + +Q NS  
Sbjct: 118 VFIQDLKVRGVEVQRNSSF 136


>gi|21449358|gb|AAM54090.1|AF453501_16 halogenase [Actinosynnema pretiosum subsp. auranticum]
          Length = 441

 Score = 50.3 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-------- 58
           D IV+GGG AG   AAV A+ G S  ++              ++     G L        
Sbjct: 3   DAIVMGGGPAGSVCAAVLARQGRSVLVLE--RQEFPRFHIGESMLPYMVGLLERHGLLDA 60

Query: 59  VREIDALDGLMGRVADAAGIQ------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           VRE   +    G   D  G +      FR    K G        Q +R  +      +  
Sbjct: 61  VREQGYVVKRGGEFIDPTGTKFFRAGVFRADFAKTGDGRHHETFQVERSHFDRVNLDQAR 120

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTG 155
           +     V +G  V G   E   +  +  ++       R   VV  TG
Sbjct: 121 A-AGATVREGAQVVGLLEEGGRVVGVRYREGGVEREERARYVVDATG 166


>gi|329928203|ref|ZP_08282134.1| putative lipoprotein [Paenibacillus sp. HGF5]
 gi|328937971|gb|EGG34371.1| putative lipoprotein [Paenibacillus sp. HGF5]
          Length = 476

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 148/490 (30%), Gaps = 125/490 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAA------------------KLGA-----STALITHKTSTI 41
            YDVIV+G G AG  A                       +           L        
Sbjct: 3   KYDVIVVGAGPAGIFACHELTLKSPGSRVLLVDKGHDIYRRSCPILEEKIKLCPPAVGRK 62

Query: 42  GSMSCNPA------IGG-----LGKGHLVREIDALDGLM-----GRVADAAGIQFRVLNV 85
               C PA       GG      GK ++  E     G M     G            +N+
Sbjct: 63  EFAGCLPACSITAGFGGAGAYSDGKFNITTE---FGGWMTDYLPGSKVMELIQYVDAINL 119

Query: 86  KKG--PAVRGPRTQADREL----YR------LAMQREILSQENLDV-------------- 119
           + G  PA+  P T A R++    Y        A  R + +++NL++              
Sbjct: 120 EHGATPAITDPTTHAIRDIEQRGYAAGLKLLRAQVRHLGTEQNLEILKSIYEYLKTRIDM 179

Query: 120 -IQGEVAGFNTEK----NIISSIVMQDNSMIRCSTVVLT---------TGTFLRGVIHIG 165
             + EV    T K    + ++ I M+   +   + V++          TG   +  + + 
Sbjct: 180 AFRAEVEDIVTIKEDGTHRVTGIAMKGGEVHEANLVMVAPGRDGSAWLTGILKKRRLKMH 239

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             ++  G   ++    +               T    R+  +T   + +     +     
Sbjct: 240 NNQVDVGVRVETSDVVMREINEHLYEGKFIFNTSVGTRV--RTFCSNPSGHVVVENHSGV 297

Query: 226 FSFMTDKITNRQIECGIT---------RTNL-----ETHRIIMENIKHSAIYSGDIKSYG 271
            +       +  +    T          T       E  R I +     +     ++ YG
Sbjct: 298 MAANGHSYKDPALGSANTNFALLVSHKFTEPFDKPNEYAREICKRANDLSSGGVIVQKYG 357

Query: 272 --PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
              R   S E +I         + FLEP         P  +   LP       I  +  L
Sbjct: 358 DVLRGRRSTEGRI--------REGFLEPT---LKEAVPGDLGLVLPYNTMKSLIEMVEAL 406

Query: 330 EKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-TTGYEEAA 379
           ++V    PG        Y +E  + + + +L  + ET +I GL+  G   G T G  +A 
Sbjct: 407 DQVT---PGIASEHTLFYGVEAKFYSARPKLSDSFET-EIKGLYCGGDGAGITRGLAQAG 462

Query: 380 AQGLVAGINS 389
           A G+    N 
Sbjct: 463 AAGVWIARNM 472


>gi|229508363|ref|ZP_04397867.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae BX 330286]
 gi|229508955|ref|ZP_04398445.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae B33]
 gi|229517069|ref|ZP_04406515.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae RC9]
 gi|229606638|ref|YP_002877286.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae MJ-1236]
 gi|255743960|ref|ZP_05417915.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholera CIRS 101]
 gi|262151335|ref|ZP_06028469.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae INDRE 91/1]
 gi|229346132|gb|EEO11104.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae RC9]
 gi|229354072|gb|EEO19005.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae B33]
 gi|229354636|gb|EEO19558.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae BX 330286]
 gi|229369293|gb|ACQ59716.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae MJ-1236]
 gi|255738443|gb|EET93833.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholera CIRS 101]
 gi|262030874|gb|EEY49504.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae INDRE 91/1]
          Length = 395

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 121/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
               Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|311105018|ref|YP_003977871.1| FAD dependent oxidoreductase [Achromobacter xylosoxidans A8]
 gi|310759707|gb|ADP15156.1| FAD dependent oxidoreductase family protein 4 [Achromobacter
          xylosoxidans A8]
          Length = 376

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA---IGGLGKGHLVR 60
          +++DV+V+G G  G   A  AAK G S A+I       G+   N     + G   G ++ 
Sbjct: 2  KNFDVVVVGAGMLGIAHAWAAAKRGLSVAVIERSRQAHGATIRNFGQVIVTGQAPGMMLS 61

Query: 61 EIDALDGLMGRVADAAGIQFR 81
                 L   +AD AG   R
Sbjct: 62 HAQQARELWLELADRAGFHVR 82


>gi|84386691|ref|ZP_00989717.1| alkyl hydroperoxide reductase, large subunit [Vibrio splendidus
           12B01]
 gi|84378497|gb|EAP95354.1| alkyl hydroperoxide reductase, large subunit [Vibrio splendidus
           12B01]
          Length = 530

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQG 122
            G +            + N     A  GP+  A  E +      E+++++   N+   + 
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEVMTEQRAANIIAAED 298

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
              G+         + ++  + +R  TV+ +TG   R     G        +      D 
Sbjct: 299 TEDGYIH-------VELESGATLRSRTVITSTGARWREMNVPGEQDYRNKGVAYCPHCDG 351

Query: 178 P 178
           P
Sbjct: 352 P 352


>gi|326387987|ref|ZP_08209591.1| sarcosine oxidase, alpha subunit family protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207488|gb|EGD58301.1| sarcosine oxidase, alpha subunit family protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           DV+V+GGG AG EAA  AA+ G S  LIT
Sbjct: 158 DVLVVGGGPAGVEAALDAAREGQSVVLIT 186


>gi|295399433|ref|ZP_06809415.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978899|gb|EFG54495.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 585

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 104/616 (16%), Positives = 181/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EV G  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVEGLVTKYEGWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 AFPADAVIMATGGPGVIFGKS--TNSIINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELDVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLTSK 418
            A   G+VAG ++ R                       +   ++   S  G     +  K
Sbjct: 394 SAIYGGMVAGPSAVRYIRGLEKSADAMPSSLYDRYVKQEEERWNNILSMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      +   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDKLLKTDEKIQELLERYKNISVTDTSKWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYNRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPAFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     YT ++  
Sbjct: 568 SLIKPRKRDYTKKKEE 583


>gi|262163575|ref|ZP_06031319.1| NAD(FAD)-utilizing dehydrogenase [Vibrio mimicus VM223]
 gi|262028001|gb|EEY46662.1| NAD(FAD)-utilizing dehydrogenase [Vibrio mimicus VM223]
          Length = 395

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 121/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +++  DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLN------VKKGPAVRGPR--TQADRELYRLAMQREIL 112
           ++ A + L            +  N      V K       R   Q         +   +L
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYSIAYEERDHGQLFCLDSAKEIVDMLL 116

Query: 113 ---SQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
              +Q N++  Q      +          +Q     I C+++V+ TG      +      
Sbjct: 117 SECNQPNIE--QRYQVEISAIAQTEQGFTLQTTIGDIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I+  +   +          F
Sbjct: 175 YKIAEQFGLPVISTTAGLVPFTLHVQDKEDFAP--LSGIAILV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITRTNLETHRIIME-------NIKHSAIYSGDIK----SYGPRY 274
               ++     QI    T     T  ++ +       N +  A  +  +K       P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLNSEKEAHPNQTLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+           + T+L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LEALQTSL---EQWSIVPNCTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFVGEVMDVTGW 375


>gi|257459556|ref|ZP_05624665.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
 gi|257442981|gb|EEV18115.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
          Length = 514

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 58/205 (28%), Gaps = 43/205 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  YDV+VIG G AG  A   A K G    +       +G    N  I          E
Sbjct: 36  FDEEYDVVVIGSGFAGSMATLQALKRGKKVLM----IEKMGRAGGNSVINAGNMAVPNNE 91

Query: 62  IDALDG-----------------------LMGRVADAAGIQF------------RVLNVK 86
                G                       L+G + D AG  F            +V++  
Sbjct: 92  FQKAAGITDSKEAFIADCLKDGLNLNHIDLLGVIYDRAGDAFEYLKSIGVEFSGKVISAS 151

Query: 87  KGPAVRGPRTQ-ADRELYRLAMQREILSQEN-LDVIQGEVAGFNTEKN-IISSIVMQDNS 143
                R  + + A    Y   M + I    N +   + +   F  + +  +  +  ++  
Sbjct: 152 GHSLKRAVQAKNASGSGYIQPMHKAIEENANAVIKKRTKFDDFVVDDSGRVVGVKCREEY 211

Query: 144 MIRCSTVVLTTGTFLRGVIHIGKLK 168
                 +         G +   K K
Sbjct: 212 KFD-PQLASDDRENKSGEVKFFKAK 235


>gi|224581918|ref|YP_002635716.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224466445|gb|ACN44275.1| FixC protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
          Length = 428

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPDFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----- 111

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A   E   +E   +I G  V         + S+   D  ++    V+L  G
Sbjct: 112 -AWLMEQAEEEGAQLITGIRVDNVVQRDGKVVSVE-ADGDILEAKVVILADG 161


>gi|254409763|ref|ZP_05023544.1| FAD dependent oxidoreductase, putative [Microcoleus chthonoplastes
           PCC 7420]
 gi|196183760|gb|EDX78743.1| FAD dependent oxidoreductase, putative [Microcoleus chthonoplastes
           PCC 7420]
          Length = 399

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 83/278 (29%), Gaps = 62/278 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAV--AAKLGASTALITHKTSTIGSMSCNPAIGG----LGK 55
           I ++YD IV+G G  G  AA     A++G    L    + T    +   + GG     GK
Sbjct: 10  IMKTYDWIVVGRGITG--AALAYELAQVGLRVLL--VDSDTAIQGATRYSYGGLAYWSGK 65

Query: 56  GHLVREIDALDGL---MGRVADAAGIQFRVLNV---------KKGPAVRGPRTQADRELY 103
             L R + A           A     QFR L++          +  A          +L 
Sbjct: 66  SDLTRVMCAEGIERHRHLSAALDHDTQFRELDLVLTISANQDPEKMAAAYADCAIPPKLL 125

Query: 104 RLAMQREILS--QEN-----LDVIQGE-------------------------VAGFNTEK 131
            +    E+      N     L V  G                          V     + 
Sbjct: 126 SVEDACELEPLLNPNAIAGVLTVRHGHIHPEHLTQGYRQAFCRAGGEQQIAQVVELLRQG 185

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK----IPAGRMGDSPSNSLFNSFM 187
           + +  +   DN     +  V+  G F R +++   ++         M ++P   L    +
Sbjct: 186 DRVQGVKTSDNQTYHAANTVVCAGGFSRALLNAAGIQVRVYFTHAEMIETPPVDLKLRTL 245

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
               +T R +    A        WD    Q   E + P
Sbjct: 246 VMPANTQRFQLEAQASAAEVEPFWD----QRGYEPVPP 279


>gi|83754890|pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
 gi|159795621|pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
 gi|159795622|pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
          Protein Ttha0370 From Thermus Thermophilus Hb8
          Length = 180

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +DVIV+GGG +G  AA   A+ G    ++    S +  +S  P   GL       E+
Sbjct: 2  WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEEL 58


>gi|311280801|ref|YP_003943032.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Enterobacter cloacae SCF1]
 gi|308749996|gb|ADO49748.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Enterobacter cloacae SCF1]
          Length = 453

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 18  DVLVIGGGPAGLTAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 73

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I+      +    V  
Sbjct: 74  --CEGICREYEHRARELGFTR-PEPQSISEVIDTEGFKVVADQMIVEAGVEPLYHSWVVD 130

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              E + +  +++++      I    +V  TG                        + L 
Sbjct: 131 VIKEGDTLCGVIVENKSGRGAILAKRIVDCTG-------DADVAARAGAPWTKRSKDKLM 183

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   ++I  R  E
Sbjct: 184 GVTVMFSCAGVDVARFNRFVQEELQPTYADWGKNWTIQTTGKEDRMFSPYMEEIFTRAQE 243


>gi|86160249|ref|YP_467034.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776760|gb|ABC83597.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 476

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G AG   A  AA LG   AL+              A  G      +RE  A
Sbjct: 3   SYDVVVIGSGPAGENGAIQAALLGKKVALV----EKEAVPGGASANTGTIPSKALRE-TA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L     R  DA GI+ RV      P + G R       +     R  L+   +++ +G  
Sbjct: 58  LAIQQARSRDAHGIEVRVSGTVTVPELMGRRGLVTAREHSR--IRSALNHAGVEMFRGIA 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
           +  +     ++ +       +    V+L TGT      H  +  I   R+ DS S  + +
Sbjct: 116 SFVDPHTIRVA-VPDGGQQDLHAEVVLLATGTRP---FHPPQYSIDNARVYDSDSILMLD 171

Query: 185 SFMKFDFDTGRLKTGT 200
              +     G    G 
Sbjct: 172 RIPRSLAILGGGVAGC 187


>gi|329943308|ref|ZP_08292082.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Chlamydophila psittaci Cal10]
 gi|332287884|ref|YP_004422785.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           psittaci 6BC]
 gi|313848456|emb|CBY17460.1| putative succinate dehydrogenase flavoprotein subunit
           [Chlamydophila psittaci RD1]
 gi|325506973|gb|ADZ18611.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           psittaci 6BC]
 gi|328814855|gb|EGF84845.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Chlamydophila psittaci Cal10]
 gi|328915148|gb|AEB55981.1| succinate dehydrogenase, flavoprotein subunit [Chlamydophila
           psittaci 6BC]
          Length = 627

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 96/326 (29%), Gaps = 55/326 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +   VIV+GGG AG  AA   A  G    L++          C    G     +L  
Sbjct: 1   MKAQGCKVIVVGGGLAGLSAAMKLADFGIVVDLVSLTKVKRSHSVCAQG-GINAALNLKH 59

Query: 61  E------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E      I A D + G   D    Q  VL +    A R  R     + +     R     
Sbjct: 60  EEQDSPYIHAYDTIKG--GDFLADQPPVLEMC-LAAPRIIRML---DNFGCPFNR----T 109

Query: 115 EN--LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP-- 170
            N  LDV +    G    + +          M      V    +  +G ++  +      
Sbjct: 110 PNGDLDVRRF--GGTLYHRTVFCGASTGQQLMYTLDEQVRRRES--QGRVNKFENHEFIR 165

Query: 171 -----AGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
                AGR       +LF N       D     TG P  +   +                
Sbjct: 166 LITNNAGRACGIVLMNLFNNRLEVLKGDAVIFATGGPGVIFKMSTNST------------ 213

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIED 280
              F T     R    G+T  N E  +I    +  I    + S  ++  G R + P    
Sbjct: 214 ---FCTGAANGRLFLQGMTYANPEFIQIHPTAIPGIDKLRLISESVRGEGGRVWVPGDSS 270

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVY 306
           K + F + +       P G      Y
Sbjct: 271 KTIIFPDGSR-----RPCGETGKPWY 291


>gi|119872698|ref|YP_930705.1| FAD dependent oxidoreductase [Pyrobaculum islandicum DSM 4184]
 gi|119674106|gb|ABL88362.1| FAD dependent oxidoreductase [Pyrobaculum islandicum DSM 4184]
          Length = 479

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 151/473 (31%), Gaps = 112/473 (23%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKL-GASTAL-------------ITHKTSTIG---SMSCN 47
            YDV+++G G AG  AA   AK  G   AL             +                
Sbjct: 18  DYDVVIVGAGPAGLFAALELAKAGGVRVALIDGGYRASQRRCPLQTPLEKCTFCVPCHIV 77

Query: 48  PAIGGLGK-------------GHLVREIDALDGLMGRV--ADAAGIQFRVLNVKKGPAVR 92
             IGG G              G L   +   D  M  +   D   ++F         AV 
Sbjct: 78  YGIGGAGTLSSGLINLRPDVGGDLHELVGDWDKAMELINYIDKTFVEFGAP-----GAVY 132

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQ--------GEVAGFNTEKNIISSIVM---QD 141
            P+ +  + L  LA +   ++   + + Q          V    T+    + + +     
Sbjct: 133 EPQMELIQRLSALAAR---VNARIIPIRQRHIGTDGSRAVVENITQYLEKAGVAIMYATW 189

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD--FDTGRLKTG 199
              +      L T    RGV++   + +  GR     +  L +   K    F  G +  G
Sbjct: 190 ALEVEKGDNGLFTVKTTRGVLNARAVLLAPGR---GGAEWLISQLKKLGASFSFGPIDIG 246

Query: 200 -------------TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI-------- 238
                        T A  D K I++        D+++  F         +++        
Sbjct: 247 VRVEVPYHVMKPLTDAIRDPKIILYTS----KYDDKVRTFCTNPRGFVVKEVYADGTVGV 302

Query: 239 --ECGITRTNLETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             E  + R +  T+   +      + ++ +  Y   I     +        I R  +   
Sbjct: 303 NGETYLERKSENTNFAFLVTLRLTDPMEDTIEYGKSIAKLATKLGGGKP-LIQRLYDLER 361

Query: 291 HQ--IFLEP----EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
            Q   +              V P  IS ALP  +       I GL+K++ + PG A    
Sbjct: 362 GQRSTWDRIRRSSISPTLKDVTPGDISLALPHRVVEDI---IEGLKKLDELAPGVASPQT 418

Query: 341 ------IEYDYINPKELFPTLETKKISGLFLAGQINGTT-GYEEAAAQGLVAG 386
                 I+Y  + P  +   L T  + GLF+AG   G + G   AAA G++A 
Sbjct: 419 LIYAPEIKYYSLRP-VVDKNLMT-TVPGLFVAGDGAGLSRGINVAAATGVLAA 469


>gi|148557051|ref|YP_001264633.1| amine oxidase [Sphingomonas wittichii RW1]
 gi|148502241|gb|ABQ70495.1| Amine oxidase (flavin-containing) [Sphingomonas wittichii RW1]
          Length = 465

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 67/246 (27%), Gaps = 51/246 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R  DV+VIGGG AG  AA   AK G    ++             P +GG          
Sbjct: 31  DRPIDVLVIGGGLAGLIAARDLAKDGHRVLMLE----------ARPRLGGRV-------- 72

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            A D L G+  D+ G  F                      ++ A+ RE+   E L+V++ 
Sbjct: 73  -AWDQLAGQAVDSGGTWF--------------------HWHQAAIWREVQCYE-LEVVER 110

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
            VA           +        R  T     G   RG+            +    +   
Sbjct: 111 PVAD-----RYFIGV----GGAFRAMTPEELDGRLRRGLAAFWGDPALQAALATPFAVQA 161

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
               +               RLD   +        F+D               R      
Sbjct: 162 SGDRLAALDRMSVEDRLRAIRLDP--VDDSALRAIFSDFGRPLDQVSLAWAMQRMANGLW 219

Query: 243 TRTNLE 248
           T  +  
Sbjct: 220 TYESFM 225


>gi|219667706|ref|YP_002458141.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfitobacterium
           hafniense DCB-2]
 gi|219537966|gb|ACL19705.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfitobacterium
           hafniense DCB-2]
          Length = 748

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V+VIGGG AG EAA +AA  G    L        G++       G+ KG 
Sbjct: 492 VMVIGGGPAGMEAARIAAARGHKVTLY----EKTGALGGKLTFAGMVKGP 537


>gi|300918071|ref|ZP_07134691.1| FAD dependent oxidoreductase [Escherichia coli MS 115-1]
 gi|300414733|gb|EFJ98043.1| FAD dependent oxidoreductase [Escherichia coli MS 115-1]
          Length = 429

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRMDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|297736353|emb|CBI25076.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    +
Sbjct: 26  DVIVVGAGVAGSALAHTLGKDGRRVHVIERDLSQPDRIVGELLQPGGYLKLIELGLEDCL 85

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   R+    +               +   M+ +  S  N+ +
Sbjct: 86  NEIDAQ-RVLGYALYKDGKNARLSYPLEQFHSDVAGRSFHNGRFVQRMREKAASLPNVKM 144

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     EK  I  +    +    ++ 
Sbjct: 145 EQGTVTSLIEEKGSIKGVQYRTKAGEELKA 174


>gi|218710106|ref|YP_002417727.1| alkyl hydroperoxide reductase subunit F [Vibrio splendidus LGP32]
 gi|218323125|emb|CAV19302.1| Alkyl hydroperoxide reductase subunit F [Vibrio splendidus LGP32]
          Length = 530

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG AG  AA  AA+ G  T ++                            D  
Sbjct: 213 FDVLVVGGGPAGSSAAIYAARKGIRTGVVA---------------------------DRF 245

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +            + N     A  GP+  A  E +      E+++       +   A
Sbjct: 246 GGQVM-------DTMAIENFISVKATTGPKLVASLEEHVKEYGVEVMT-------EQRAA 291

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                +N       + ++  + +R  TV+ +TG   R     G        +      D 
Sbjct: 292 NIIAAENTEDGYIHVELESGATLRARTVITSTGARWREMNVPGEQEYRNKGVAYCPHCDG 351

Query: 178 P 178
           P
Sbjct: 352 P 352


>gi|170288984|ref|YP_001739222.1| FAD dependent oxidoreductase [Thermotoga sp. RQ2]
 gi|170176487|gb|ACB09539.1| FAD dependent oxidoreductase [Thermotoga sp. RQ2]
          Length = 438

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 30/175 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV+V+G G +G   A V AK G   A++               +GG+   H ++E
Sbjct: 1   MKIEFDVVVVGAGSSGLSCAYVLAKNGLKVAVV----EKGEYPGSKNVMGGVLYVHPLKE 56

Query: 62  I------DALDG------LMGRVADAAGIQ------FRVLNVKKGP-AVRGPRTQADREL 102
           I       A +       ++ +     G +       R +  K+ P A    R   DR  
Sbjct: 57  IMPDFLEKAANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDR-- 114

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNT-EKNIISSIVMQD-NSMIRCSTVVLTTG 155
                 +E+     L + + +V  F   EK  I+ +V       I    VV+  G
Sbjct: 115 ---WFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEG 166


>gi|225429082|ref|XP_002271528.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K G    +I         I      P     +  LG    +
Sbjct: 62  DVIVVGAGVAGSALAHTLGKDGRRVHVIERDLSQPDRIVGELLQPGGYLKLIELGLEDCL 121

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   R+    +               +   M+ +  S  N+ +
Sbjct: 122 NEIDAQ-RVLGYALYKDGKNARLSYPLEQFHSDVAGRSFHNGRFVQRMREKAASLPNVKM 180

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     EK  I  +    +    ++ 
Sbjct: 181 EQGTVTSLIEEKGSIKGVQYRTKAGEELKA 210


>gi|326202122|ref|ZP_08191992.1| HI0933 family protein [Clostridium papyrosolvens DSM 2782]
 gi|325987917|gb|EGD48743.1| HI0933 family protein [Clostridium papyrosolvens DSM 2782]
          Length = 408

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 149/430 (34%), Gaps = 73/430 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGG AG  AA +AA  G    L          +     I G G+ ++  + D    
Sbjct: 4   VIVIGGGPAGIMAAGIAAGRGRDVIL----LEKNSKLGKKLLISGKGRCNITNDTDVEGL 59

Query: 68  LM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ----- 114
           +      G    +A   F   ++      +G RT+ +   R        R++L+      
Sbjct: 60  IENTPGNGNFLYSAFYTFSNQDLIYFFNQKGLRTKVERGGRVFPESDSSRDVLNTLMDFL 119

Query: 115 --ENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               + +  +  V     + N ++ + + D S+I   +V+L  G           +  P 
Sbjct: 120 KSNGVKINTEATVTEILAQDNKVTGVRLSDGSIIEAESVILAVG----------GMSYPG 169

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT- 230
                  +   ++   K       LK      +  +   W K + Q    + +  SF   
Sbjct: 170 ----TGSTGDGYDMVRKLGHTVTPLKPSLVPLITQE--EWIK-DLQGLSLKNVSVSFRNR 222

Query: 231 --DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC----PSIEDKIVR 284
              +I N   E   T   +    I+  +    +    +I+             +++++ R
Sbjct: 223 NGKEIYNDFGEMIFTHFGVSGPVILSASRHLLSYDFKNIEMSLDLKPALTLEKLDERVQR 282

Query: 285 FGERNGHQIFLE-----------PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVN 333
             ++   + +             P  +    + P      + +E + + +  +  L+   
Sbjct: 283 DFDKYSRKQYKNSLDDLLPQKFIPVIIELSEINPEKPVHQITKEERKRLVTLLKSLKITV 342

Query: 334 I-IRP-------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AA 379
           I  RP          ++   INP     T+E+KKI GLF+AG++     Y        A 
Sbjct: 343 IGARPIKEAIVTAGGVKTSEINP----STMESKKIGGLFMAGEVIDVDAYTGGFNLTIAF 398

Query: 380 AQGLVAGINS 389
           + G +AG+N 
Sbjct: 399 STGYLAGLNC 408


>gi|237729339|ref|ZP_04559820.1| FixC protein [Citrobacter sp. 30_2]
 gi|226909068|gb|EEH94986.1| FixC protein [Citrobacter sp. 30_2]
          Length = 428

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRMYAHSLE 56

Query: 61  -------EIDALDGLM-----GRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                  E   ++ ++       + D   +     N ++  + +      R++ D     
Sbjct: 57  RIIPGFAEQAPIERIITHEKLAFMTDKGAMTIDYCNGEEAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V      +  +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQREGKVVGVE-ADGDILEAKVVILADG 161


>gi|55980339|ref|YP_143636.1| thioredoxin reductase-like protein [Thermus thermophilus HB8]
 gi|55771752|dbj|BAD70193.1| thioredoxin reductase related protein [Thermus thermophilus HB8]
          Length = 180

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +DVIV+GGG +G  AA   A+ G    ++    S +  +S  P   GL       E+
Sbjct: 2  WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEEL 58


>gi|225387901|ref|ZP_03757665.1| hypothetical protein CLOSTASPAR_01671 [Clostridium asparagiforme
           DSM 15981]
 gi|225046028|gb|EEG56274.1| hypothetical protein CLOSTASPAR_01671 [Clostridium asparagiforme
           DSM 15981]
          Length = 424

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 323 IRTIPGLEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQING-TTGY 375
           +R IPGLE      P YA      + +  + P+     L+   +S L+ AG+  G   G+
Sbjct: 276 LRRIPGLENARYEDP-YAGGNGNSVRFLAMCPRG--DDLKVNGLSNLYCAGEKAGPLVGH 332

Query: 376 EEAAAQGLVAGINSARKSNKLDCICFSRTDS 406
            EA   G +AG N A   +    +   R+ +
Sbjct: 333 TEAMVTGALAGYNCAAAISGKPPLILPRSLA 363


>gi|254465846|ref|ZP_05079257.1| dihydrolipoyl dehydrogenase [Rhodobacterales bacterium Y4I]
 gi|206686754|gb|EDZ47236.1| dihydrolipoyl dehydrogenase [Rhodobacterales bacterium Y4I]
          Length = 464

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M  +SYDVIVIG G  G  AA  AA+LG  T ++      +G +     C P    L   
Sbjct: 1   MAAQSYDVIVIGAGPGGYVAAIRAAQLGLKTCVVE--REHLGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   ++       +  +       V+   +G A +                  ++ +  
Sbjct: 59  EVFHLMERAKDFGLKAENIGYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           + V+ GE +     K  +S +     +  +    +VL TG   R +
Sbjct: 108 ITVVMGEAS--IPAKGKVS-VKTDKGTEELTAKNIVLATGARAREL 150


>gi|297203851|ref|ZP_06921248.1| phytoene dehydrogenase [Streptomyces sviceus ATCC 29083]
 gi|197711906|gb|EDY55940.1| phytoene dehydrogenase [Streptomyces sviceus ATCC 29083]
          Length = 464

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D +VIGGG AG  AA   A  G    L+  +          P +GGL       E+   +
Sbjct: 10 DAVVIGGGLAGITAALALADAGVRVTLLEGR----------PRLGGLAFSFQRGELTVDN 59

Query: 67 GLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQAD 99
          G    +       +R  L+  +G A+   + + D
Sbjct: 60 GQHVYL--RCCTAYRWFLDRIEGTALAPLQDRLD 91


>gi|118444507|ref|YP_878167.1| NAD(FAD)-utilizing dehydrogenase [Clostridium novyi NT]
 gi|118134963|gb|ABK62007.1| NAD(FAD)-utilizing dehydrogenase [Clostridium novyi NT]
          Length = 408

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           VIVIGGG AG  AA  +AK   +   +  K   +G       I G G+ ++    D    
Sbjct: 4   VIVIGGGPAGMMAAIESAKNPNNEVTLLEKNDKLG---KKLFITGKGRCNVTNNKDISEF 60

Query: 64  ----ALDGLMGRVADAAGIQFRVLN--VKKGPAVRGPRT-----QADRELYRLAMQREIL 112
                 +      +  +      +N     G  ++  R      ++D+    +    + L
Sbjct: 61  FDNIPTNSTFLYSSLYSYTNLDTINFFESLGVPLKVERGDRVFPKSDKSSDIIKAFEKEL 120

Query: 113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           S +N+ ++    +    TE N IS +++++   I+    +L TG
Sbjct: 121 SNKNVHIMLNSTIKDIVTENNTISKVILKNGKEIKGDHFILATG 164


>gi|294676230|ref|YP_003576845.1| geranylgeranyl reductase [Rhodobacter capsulatus SB 1003]
 gi|114852|sp|P26172|BCHP_RHOCA RecName: Full=Geranylgeranyl diphosphate reductase; AltName:
           Full=Geranylgeranyl reductase
 gi|46117|emb|CAA77534.1| 391 aa (43 kD) bacteriochlorophyll synthase subunit [Rhodobacter
           capsulatus]
 gi|294475050|gb|ADE84438.1| geranylgeranyl reductase [Rhodobacter capsulatus SB 1003]
          Length = 391

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREID 63
            YD  V+GGG AG  AA   A+ G   AL        G +  C    GG     L+R+ D
Sbjct: 2   KYDAFVVGGGPAGSTAAWDMARAGLKVAL----LDRAGRIKPC----GGAIPPRLIRDFD 53

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
             D L+     +A +          P   G     DRE Y   ++  
Sbjct: 54  IPDHLLVAKITSARMISPTGRFVDIPIENGFVGMVDREDYDEWLRER 100


>gi|325914048|ref|ZP_08176404.1| dihydrolipoamide dehydrogenase [Xanthomonas vesicatoria ATCC
          35937]
 gi|325539817|gb|EGD11457.1| dihydrolipoamide dehydrogenase [Xanthomonas vesicatoria ATCC
          35937]
          Length = 478

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  +YDV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAENYDVVVIGAGPAGYHAAIRAAQLGMKVACIDAAIGKDG----KPALGGT 48


>gi|317129847|ref|YP_004096129.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474795|gb|ADU31398.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Bacillus cellulosilyticus DSM 2522]
          Length = 589

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G S  L +          C     N A+  +G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAEAGVSVDLFSVVPVKRSHSVCAQGGINGALNTMGEGDSTWEH 65

Query: 62  --IDALDG-------LMGRVADAA------GIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
                  G        +  + DAA        +  V+  + G  +   R     + +R A
Sbjct: 66  FDDSVYGGDFLANQPPLKAMCDAAPGIIHLMDRMGVMFNRTGEGLLALRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGF-------------NTEKNIISSIV-----MQDNS 143
                  Q+ L      V + EVAG                + N+   +        +  
Sbjct: 126 FAGATTGQQLLYALDEQVRRHEVAGLVTKYEGWEFLHAVLDDDNVCRGVTAQNLQTSEIE 185

Query: 144 MIRCSTVVLTTG 155
             R   V+L TG
Sbjct: 186 SFRADAVILATG 197


>gi|92122627|gb|ABE73759.1| squalene epoxidase [Panax notoginseng]
          Length = 537

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I         I      P     +  LG    V
Sbjct: 74  DVIIVGAGVAGSALAYTLAKDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCV 133

Query: 60  REIDA---LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            EIDA       +        + + +  +    A R          +   M+ +  S  N
Sbjct: 134 NEIDAQRVFGYALYMDGKNTRLSYPLEEIHSDVAGRS----FHNGRFVQRMREKAASLPN 189

Query: 117 LDVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
           + + QG V     +K  +  +    +D   +  
Sbjct: 190 VRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSA 222


>gi|88603178|ref|YP_503356.1| hypothetical protein Mhun_1926 [Methanospirillum hungatei JF-1]
 gi|88188640|gb|ABD41637.1| HI0933-like protein [Methanospirillum hungatei JF-1]
          Length = 414

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 113/411 (27%), Gaps = 83/411 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--- 60
             Y VIVIGGG AG   + +  K G  T L       + +      + G G+ +L     
Sbjct: 2   NQYAVIVIGGGPAGLFCSLLLGKGGCKTLL----LEKMPTCGRKLLLSGSGQCNLTHTGP 57

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             E  +  G  GR    A + F  + +      RG   + D             +++ L+
Sbjct: 58  ISEFTSHYGDHGRFIRPALMHFSNVKLISFFQDRGVPFRDDGN--GKYFPESGKARDILN 115

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCST--VVLTTGTFLRGVIHIGKLKIPAGRMGD 176
           V+  E           + +++  +  +   +  +   T T      H   + +  G    
Sbjct: 116 VLLKEANE--------AGVIIHTSEPVHTISHDISGFTVTTRTDTYHSTGVVLATGGYTY 167

Query: 177 SPSNSLFNSF---MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
             + S  + +                    +  +   +         +  +       K+
Sbjct: 168 PVTGSTGDGYTLAQALGHTIAEPGPALTP-IHTQNFPFRDLSGISFSQVPLTLYREKKKV 226

Query: 234 TNRQIECGITRTNL------ETHRIIMENIKHSAIYSGDIKSYGPRYC------------ 275
              + +  IT T        +  R      +    +         R              
Sbjct: 227 HEARGDLLITHTGFSGPGILDMSRYFRAGDELRVSFIQYTNINSAREGLISRFSSGGVKQ 286

Query: 276 -------PSIEDKIVRF--------GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
                    + D+ VR          +    Q   E                 +P  +++
Sbjct: 287 VKTILTSIPLPDRFVRLIMELAEVPPDMTCAQFPKEMRNRL------------IPMLLEY 334

Query: 321 QFIRTIPGLEKVNII-RPGYA---IEYDYINPKELFPTLETKKISGLFLAG 367
                 PG E   ++ R G +   +            ++E++ + GL+  G
Sbjct: 335 PVQEMKPGGENEAMVSRGGVSLDEVR---------KESMESRILPGLYCIG 376


>gi|262375402|ref|ZP_06068635.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter lwoffii
           SH145]
 gi|262309656|gb|EEY90786.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter lwoffii
           SH145]
          Length = 521

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 49/182 (26%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV+VIGGG AG  +A  AA+ G  T ++                            + 
Sbjct: 211 TFDVLVIGGGPAGNTSAIYAARKGIKTGIVA---------------------------ER 243

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G +    D       + N       +GP+  A+ E +      +I    NL      V
Sbjct: 244 MGGQVMDTMD-------IENFTSVQKTQGPKFAAEMEAHVREYGVDI---MNL----QRV 289

Query: 125 AGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGD 176
           +         +    + + + + +   TV+L+TG   R     G        +      D
Sbjct: 290 SDIKGADETANGLVEVTLANGAKLESKTVILSTGARWREMNVPGEQEYKTRGVAYCPHCD 349

Query: 177 SP 178
            P
Sbjct: 350 GP 351


>gi|196250003|ref|ZP_03148698.1| HI0933 family protein [Geobacillus sp. G11MC16]
 gi|196210517|gb|EDY05281.1| HI0933 family protein [Geobacillus sp. G11MC16]
          Length = 433

 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--ID 63
           YDVI+IGGG +G  AA  A + GA+  L          +    AI G G+ ++     ID
Sbjct: 3   YDVIIIGGGPSGLMAAIAAGEQGANVLL----LEKGTKLGRKLAISGGGRCNVTNRLPID 58

Query: 64  ALDGLMGRVADAAGIQFRVLN----VKKGPAVRGPRTQAD------RELYRLAMQREILS 113
            +   +          F V N    ++    +  P  + D      +     ++   +++
Sbjct: 59  EIFRHIPGNGRFLYSAFSVFNNEDIIRFFERLGVPLKEEDHGRMFPKSDSAQSVVTALVN 118

Query: 114 Q-ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           + + L V   ++  V     E      + ++    I  + VV+  G
Sbjct: 119 ELDRLKVDIRLEAPVEDVLYEHGKTVGVKLKSGETIAANAVVVAVG 164


>gi|170087690|ref|XP_001875068.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650268|gb|EDR14509.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 622

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 23/137 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IG G AG  AA   AK G +  ++  +   +          G   G   R I++  
Sbjct: 16  DVLIIGAGPAGLMAANALAKSGVNVRIVDQRPDKVA--------AGQADGIQPRTIESYG 67

Query: 67  GLMGRVADAAGIQFRVL-NVKKGPAV----RGPRTQADRELYRLAMQREILSQENLDVIQ 121
                + +   +      N      +    R P   A    +   +           + Q
Sbjct: 68  LAERLLREGNQMHMAAFYNPSASGGIELTDRVPDVTAPSARFPFEV----------TLHQ 117

Query: 122 GEVAGFNTEKNIISSIV 138
           G +     +      + 
Sbjct: 118 GAIEAIFLDSMESLGVK 134


>gi|94968540|ref|YP_590588.1| FAD dependent oxidoreductase [Candidatus Koribacter versatilis
          Ellin345]
 gi|94550590|gb|ABF40514.1| FAD dependent oxidoreductase [Candidatus Koribacter versatilis
          Ellin345]
          Length = 365

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M    YD+IV GGG AG  AA  AA+LGA   L+  
Sbjct: 1  MEVARYDLIVAGGGPAGTSAAITAARLGARVLLLEQ 36


>gi|313674483|ref|YP_004052479.1| geranylgeranyl reductase [Marivirga tractuosa DSM 4126]
 gi|312941181|gb|ADR20371.1| geranylgeranyl reductase [Marivirga tractuosa DSM 4126]
          Length = 411

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +D+I++G G AG   A          A++   T     I    C  A+       L R 
Sbjct: 7   DFDLIIVGAGPAGFACAYELKNPNLKIAILDQGTFPRDKI----CGDALSADVVNQLYRM 62

Query: 62  IDALDGL---MGRVADAAGIQFRVLNVK------KGPAVRGPRTQADREL-YRLAMQREI 111
             AL        +  D+ G++F   N        + P          + L +   + ++I
Sbjct: 63  DQALGEKFENFAQKIDSHGVRFVAPNHTSLDINYQNPNHGNAAGYISKRLDFDYFLIQKI 122

Query: 112 LSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL-----RGVIHIG 165
            +Q N+ + Q E V   +   + I  +       +    ++   G         G I I 
Sbjct: 123 ENQPNVKIFQTEKVLDISRSLDGIE-VKTNK-RQLTAQMIIGADGAHSIVNRKLGNIKIE 180

Query: 166 KLKIPAG 172
           K    AG
Sbjct: 181 KDHYCAG 187


>gi|268592067|ref|ZP_06126288.1| FixC protein [Providencia rettgeri DSM 1131]
 gi|291312461|gb|EFE52914.1| FixC protein [Providencia rettgeri DSM 1131]
          Length = 428

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 24/170 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D I++G G AG  AA V A+ GA   L                 GG    H + 
Sbjct: 1   MSDDIFDAIIVGAGLAGSVAALVLAREGAQVLL----IERGNYAGGKNVTGGRMYAHSLE 56

Query: 61  EIDALDGLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD- 118
               + G       +    + ++  + +  AV      A  +         +  +  LD 
Sbjct: 57  --RIIPGFTQEAPIERMITREKLSFMTETGAVTVDFQNAAAQTPDETSWSVLRGK--LDP 112

Query: 119 --VIQGE-----------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             V Q E           V         +  +   D  ++    V+L  G
Sbjct: 113 WLVEQAENAGAQCITGIRVDKLVESDGKVVGVE-ADGDVLEAKVVILADG 161


>gi|21229401|ref|NP_635323.1| hypothetical protein MM_3299 [Methanosarcina mazei Go1]
 gi|20907993|gb|AAM32995.1| hypothetical protein MM_3299 [Methanosarcina mazei Go1]
          Length = 423

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID- 63
            YDVIV+G G  G  AA  AA  GA   L+    S    + C   +        V E D 
Sbjct: 2   KYDVIVVGAGPVGSTAARYAAMNGAKVLLLEEHASIGSPVGCTGLLSTRA----VEECDL 57

Query: 64  ------ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
                   + + G    A   Q   ++ K   A    R   DR L  +A++  + 
Sbjct: 58  KPTDEFVFNSVRGAFVHAPDGQCLPVDGKHTRAYVVSRKNFDRALAVMAVEEGVE 112


>gi|331660950|ref|ZP_08361882.1| invasion protein IbeA [Escherichia coli TA206]
 gi|331051992|gb|EGI24031.1| invasion protein IbeA [Escherichia coli TA206]
          Length = 454

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 72/240 (30%), Gaps = 21/240 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA  A +LGA T ++       GS+       G+      R     D
Sbjct: 19  DVLVIGGGPAGLSAAIAAGRLGARTMIV----ERYGSLGGVLTQVGVESFAWYRHPGTED 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                +      + R L   + P  +      D E +++   + I       +    V  
Sbjct: 75  --CEGICREYEGRARALGFTR-PEPQSISEVIDTEGFKVVADQMITESGVEPLYHSWVVD 131

Query: 127 FNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
              + + +  +++++      I    +V  TG                        + L 
Sbjct: 132 VIKDGDTLFGVIVENKSGRGAILAKRIVDCTG-------DADIAARAGAPWTKRSKDQLM 184

Query: 183 --FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK-TEKQFADERLIPFSFMTDKITNRQIE 239
                F     D  R        L      W K    Q   +    FS   + I  R  +
Sbjct: 185 GVTVMFSCAGVDVARFNRFVAEELKPTYADWGKNWTIQTTGKEDPMFSPYMEDIFTRAQQ 244


>gi|121997875|ref|YP_001002662.1| dihydrolipoamide dehydrogenase [Halorhodospira halophila SL1]
 gi|121589280|gb|ABM61860.1| dihydrolipoamide dehydrogenase [Halorhodospira halophila SL1]
          Length = 473

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDVIVIG G AG  AA   A+LG  TA++             PA+GG 
Sbjct: 1  MSNHYDVIVIGAGPAGYSAAIRCAQLGMRTAVV----DAFVFKDGEPALGGT 48


>gi|317153533|ref|YP_004121581.1| thioredoxin reductase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943784|gb|ADU62835.1| thioredoxin reductase [Desulfovibrio aespoeensis Aspo-2]
          Length = 306

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 52/161 (32%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD +VIGGG AG  AA    + G  TA++              + GG     +  EI+
Sbjct: 2   KEYDAVVIGGGPAGMTAALYLLRAGVKTAMLE-----------KLSPGGQV--LMTSEIE 48

Query: 64  AL-----DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                        +AD                                    + S   L+
Sbjct: 49  NYPGFPTGLQGWELADKFAAH-------------------------------LESYP-LE 76

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            I  EV G    +   + +V +    +R   ++L TG+  R
Sbjct: 77  RINDEVRGIELGEPYHTVVVGE--ERVRAKAIILATGSRYR 115


>gi|307706967|ref|ZP_07643766.1| HI0933-like family protein [Streptococcus mitis SK321]
 gi|307617681|gb|EFN96849.1| HI0933-like family protein [Streptococcus mitis SK321]
          Length = 391

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 131/417 (31%), Gaps = 66/417 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG           +
Sbjct: 116 ALEKKITELGGQVATQTEIVSVKKIDDQFILKSADQTFTCDKLIVTTGGKSYPSTGSTGV 175

Query: 168 KIPAGRMGDSPSNSLFNS----FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADE 221
                R        L  +       F      G              I  D     F   
Sbjct: 176 GHEIARHFKHTITELEAAESPLLTDFPHKVLQGISLDDVTLSYGKHVITHDLLFTHFGLS 235

Query: 222 RLIP-----FSFMTDKITNRQIECGITRTNLETH-RIIMENIKHSAIYSGDIKSYGPRYC 275
                    F    + ++   +   ++  +L T      E    +A+ +   +     + 
Sbjct: 236 GPAALRMSSFVKGGEVLSLDVLP-QLSEKDLATFLEENREKSLKNALRTLLPERLAEFFV 294

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
               +K+ +  E+   Q+ L  +               L   +  +       L K  + 
Sbjct: 295 QGYPEKVKQLTEKERDQLHLSIKE--------------LKIPVTGKM-----SLAKSFVT 335

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           + G +++   INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 336 KGGVSLKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|169839419|ref|ZP_02872607.1| glucose-inhibited division protein A [candidate division TM7
           single-cell isolate TM7a]
          Length = 37

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
           + GPR+CPS++ KI+ F E+  HQIFLE E + +D 
Sbjct: 1   TKGPRHCPSLDRKIMNFPEKTNHQIFLEQESVESDE 36


>gi|289450029|ref|YP_003475623.1| putative thioredoxin-disulfide reductase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184576|gb|ADC91001.1| putative thioredoxin-disulfide reductase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 307

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 42/166 (25%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI++G G AG  AA  A + G  T +                           E    
Sbjct: 4   FDVIIVGAGPAGLTAALYAGRAGLKTLVF--------------------------EAGVP 37

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   +D       V N        GP        +      E   Q N      ++ 
Sbjct: 38  GGKMLSTSD-------VENWPGSMPTTGPELAEKMTEHAFRFGAE---QVN-----AQIT 82

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             + E N++ ++   +  +     ++L TG+  R +   G+     
Sbjct: 83  DVHKEGNLVVAV-DSEGKVYHSKAIILATGSTERHLGIKGEADYAG 127


>gi|254520369|ref|ZP_05132425.1| FAD dependent oxidoreductase [Clostridium sp. 7_2_43FAA]
 gi|226914118|gb|EEH99319.1| FAD dependent oxidoreductase [Clostridium sp. 7_2_43FAA]
          Length = 471

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 107/322 (33%), Gaps = 49/322 (15%)

Query: 100 RELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG--- 155
           RELY       + +   +++I G  V     E      +V +  +      VV++ G   
Sbjct: 163 RELYGKLEDYLLQN--GVEIIFGSIVKDIIIENGEARGVVTESGN-YYADKVVISVGRNG 219

Query: 156 -TFLRGVIHIGKLKIPAG------RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
             FL  +    K++   G      R        +     +  ++   +    P R   +T
Sbjct: 220 ADFLSDLCDKHKIEKAVGVVDIGVRFEMKSEGDI-QRINELMYEGKFIGNVAPFRDKVRT 278

Query: 209 IIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
                   Q  D   +      + ++         + ++ T+  I+ + K +  +   I+
Sbjct: 279 FC------QNPD-GFVAAEVYDNGVSLANGHAYKEKKSINTNFAILSSHKFTEPFKKPIE 331

Query: 269 S---YGPRY--CPSIEDKIVRFGE-RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQ--- 319
                        + E  + RFG+  NG + + E    N+       + TA+P +I    
Sbjct: 332 YANKVAELTNLLSNGEVVVQRFGDILNGKRTWKEELENNSVE---ATLKTAMPGDITLGI 388

Query: 320 ------------HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
                        +  + + G    + +  G  I+  Y N  +L   LET  I  L+  G
Sbjct: 389 PYRTMTNIVNFILEMDKVVKGFANPDNLLYGPEIK-FYSNAVKLNENLET-NIKNLYAIG 446

Query: 368 QING-TTGYEEAAAQGLVAGIN 388
              G T G   A+  G+    N
Sbjct: 447 DGAGLTRGLMMASCSGVYLARN 468


>gi|58039844|ref|YP_191808.1| putative oxidoreductase [Gluconobacter oxydans 621H]
 gi|58002258|gb|AAW61152.1| Putative oxidoreductase [Gluconobacter oxydans 621H]
          Length = 419

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 30/193 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS--MSCNPAIGGLGKGHLVRE 61
           DV+VIGGG AG  AA + A+ G    L+    H    IG   + CN          L+R+
Sbjct: 12  DVLVIGGGPAGSTAATLLARQGYDVVLVEKDAHPRFHIGESLLPCNL--------PLLRD 63

Query: 62  IDALDGLMGRVADAAGIQF---RVLNVKKGP-----------AVRGPRTQADRELYRLAM 107
           +  LD +        G +F   R       P           A +  R+Q D  L+R A 
Sbjct: 64  LGVLDQVQAMGVYKPGAEFVSEREDRRVPFPFRYAIGARDDHAYQVVRSQFDELLFRNAA 123

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           +    + E   V+      F+  +     I     +        +   +   G +     
Sbjct: 124 RHGAQTHEQTRVLS---VDFHAGQRATVKIKDDTGTERTLKPRFVLDASGREGFLSRTLR 180

Query: 168 KIPAGRMGDSPSN 180
           +  A R   + + 
Sbjct: 181 RRTADRNNSTAAI 193


>gi|124028114|ref|YP_001013434.1| dehydrogenase [Hyperthermus butylicus DSM 5456]
 gi|123978808|gb|ABM81089.1| predicted Dehydrogenase [Hyperthermus butylicus DSM 5456]
          Length = 454

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGG--LGKG 56
           M N   YDVIV G G AG  A    A++G     I       + S  C  A+G   + + 
Sbjct: 1   MKNEPRYDVIVAGLGPAGSVALWHLARMGFRVLGIERNRPEKLWSKPCGDALGAHHITES 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HL     ++        D       V        V G     DR  +   +  + L++  
Sbjct: 61  HLPEPPSSVLKNRVTAIDIYSPSEEVRYR-----VHGKGYIIDRTAFGRWLVEDALNRGA 115

Query: 117 LDVIQGEVAGFNTEKNIISSI--VMQDNS--MIRCSTVVLTTG 155
             + +  +         +  +    +D     +  S V+  TG
Sbjct: 116 EVLYETSILEPIISGGKVIGVKAKSKDGRVVELYASLVIEATG 158


>gi|108706998|gb|ABF94793.1| Squalene monooxygenase, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 582

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           D++++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 58  DIVIVGAGVAGSALAYTLGKDGRRVHVIERDMTEPDRIVGELLQPGGYLKLMELGLEDCV 117

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 118 EEIDAQ-RVLGYALLKDGRNTKLSYPLEKFHSDVAGRSFHNGR--FIQKMRQKAASLPNV 174

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 175 HLEQGTVTSLLEEGGTVKGVQYKTKSGEELKA 206


>gi|115451723|ref|NP_001049462.1| Os03g0231700 [Oryza sativa Japonica Group]
 gi|108706995|gb|ABF94790.1| Squalene monooxygenase, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547933|dbj|BAF11376.1| Os03g0231700 [Oryza sativa Japonica Group]
 gi|215706992|dbj|BAG93452.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 524

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           D++++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 58  DIVIVGAGVAGSALAYTLGKDGRRVHVIERDMTEPDRIVGELLQPGGYLKLMELGLEDCV 117

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 118 EEIDAQ-RVLGYALLKDGRNTKLSYPLEKFHSDVAGRSFHNGR--FIQKMRQKAASLPNV 174

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 175 HLEQGTVTSLLEEGGTVKGVQYKTKSGEELKA 206


>gi|27311240|gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa Japonica Group]
 gi|108706996|gb|ABF94791.1| Squalene monooxygenase, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125543000|gb|EAY89139.1| hypothetical protein OsI_10630 [Oryza sativa Indica Group]
 gi|125585494|gb|EAZ26158.1| hypothetical protein OsJ_10025 [Oryza sativa Japonica Group]
          Length = 522

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           D++++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 58  DIVIVGAGVAGSALAYTLGKDGRRVHVIERDMTEPDRIVGELLQPGGYLKLMELGLEDCV 117

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA   ++G     D    +      K    V G      R  +   M+++  S  N+
Sbjct: 118 EEIDAQ-RVLGYALLKDGRNTKLSYPLEKFHSDVAGRSFHNGR--FIQKMRQKAASLPNV 174

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +    +    ++ 
Sbjct: 175 HLEQGTVTSLLEEGGTVKGVQYKTKSGEELKA 206


>gi|119509495|ref|ZP_01628643.1| succinate dehydrogenase [Nodularia spumigena CCY9414]
 gi|119465901|gb|EAW46790.1| succinate dehydrogenase [Nodularia spumigena CCY9414]
          Length = 575

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AGC AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGCRAAVEIARTDPSLNVAVVAKTHPIRSHSVAAQGGMAASLKNVDSED 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQA--- 98
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  SWEAHAFDTVKGSDYLADQDAVAILAQEAPDVVIDLEHMGVLF-SRLPDGRIAQRAFGGH 121

Query: 99  --DRELYRL-----AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQD-----N 142
             DR  Y       A+  E+++   +  + + Q   V     E      +VM +      
Sbjct: 122 SHDRTCYAADKTGHAILHELVNNLRRYGVHIYQEWYVMRLILESGEAKGVVMFNLLDGHI 181

Query: 143 SMIRCSTVVLTTGTFLR 159
            ++R   V+  TG + R
Sbjct: 182 EVLRAKAVMFATGGYGR 198


>gi|262375491|ref|ZP_06068724.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter lwoffii
           SH145]
 gi|262309745|gb|EEY90875.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter lwoffii
           SH145]
          Length = 521

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  +A  AA+ G  T ++                            + +
Sbjct: 212 FDVLVIGGGPAGNTSAIYAARKGIKTGIVA---------------------------ERM 244

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +    D       + N       +GP+  A+ E +      +I    NL      V+
Sbjct: 245 GGQVMDTMD-------IENFTSVQKTQGPKFAAEMEAHVREYGVDI---MNL----QRVS 290

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                    +    + +++ + +   TV+L+TG   R     G        +      D 
Sbjct: 291 DIKGADETANGLVEVTLENGAKLESKTVILSTGARWREMNVPGEQEYKTRGVAYCPHCDG 350

Query: 178 P 178
           P
Sbjct: 351 P 351


>gi|260427550|ref|ZP_05781529.1| FAD dependent oxidoreductase [Citreicella sp. SE45]
 gi|260422042|gb|EEX15293.1| FAD dependent oxidoreductase [Citreicella sp. SE45]
          Length = 426

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ VIGGG  GC AA  AA+ GA+ AL+  +    G    N  +   G      EI A  
Sbjct: 30  DLAVIGGGFTGCSAALEAARGGAAVALLEAREIGYGGSGRNVGLANAGLWMKPEEITAEL 89

Query: 67  G------LMGRVADAAGIQFRVLNV-------KKGPAVRGPRTQADRELYRLAMQREILS 113
           G      L+ R+A+A    F ++         ++   +      A  +  R  +++ + +
Sbjct: 90  GEDAGRALIARLAEAPTTVFGLIEREAIDCEARRAGTLHCAHAPAGMDDLRERLRQGLAA 149

Query: 114 QENLDVIQGEVAGFNTEKNIISS 136
              L+++  E A   T    +  
Sbjct: 150 GAPLELLDAETARARTGSTAVHG 172


>gi|15899534|ref|NP_344139.1| FIXC protein homolog (fixC) [Sulfolobus solfataricus P2]
 gi|284173474|ref|ZP_06387443.1| hypothetical protein Ssol98_02310 [Sulfolobus solfataricus 98/2]
 gi|13816171|gb|AAK42929.1| FIXC protein homolog (fixC) [Sulfolobus solfataricus P2]
 gi|261601306|gb|ACX90909.1| glucose-inhibited division protein A [Sulfolobus solfataricus 98/2]
          Length = 395

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGG---LGKG 56
            +D++V+G G AG  AA  AA+ GA   L+         +  G+M           +   
Sbjct: 2   KFDIVVVGAGPAGSSAAITAARGGAKVLLLERGPEPGSKNVSGAMIRLEDFSSVYDIASI 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            + R++  +D  +  ++D+   +  V NV+   A    R + D+      M ++      
Sbjct: 62  PIERKVKNVD--LILLSDSNRTRISV-NVESNLAT-VARLKLDK-----WMAQQAEKAGA 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L + +  V G   E N     +  D   I    VVL  G
Sbjct: 113 LLITKTTVLGVEREGNEYK--ISTDRGEITADRVVLAEG 149


>gi|257070257|ref|YP_003156512.1| thioredoxin reductase [Brachybacterium faecium DSM 4810]
 gi|256561075|gb|ACU86922.1| thioredoxin reductase [Brachybacterium faecium DSM 4810]
          Length = 488

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 356 ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDC 398
           +   + GLFLAG+I G TG   A A+G +AG+ +A +      
Sbjct: 315 QAASVPGLFLAGEITGVTGAGGAVAEGRIAGLAAAARHVGRSP 357


>gi|158320610|ref|YP_001513117.1| glucose-inhibited division protein A [Alkaliphilus oremlandii
           OhILAs]
 gi|158140809|gb|ABW19121.1| glucose-inhibited division protein A [Alkaliphilus oremlandii
           OhILAs]
          Length = 426

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +P     + +R + GLE      P     G +I Y  + P+     ++ + I  LF AG+
Sbjct: 267 MPFYPLEK-LRKLKGLENAKYEDPYSGGIGNSIRYLSVAPR--DNMMKVEGIENLFCAGE 323

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            +G   G+ EA   G +AG NS R S  +  +      +  G +I     +   +
Sbjct: 324 KSGLFVGHTEAIVTGSLAGHNSIRASLGIPLLQLPVDIA-SGDLISYANERIHHQ 377


>gi|294501581|ref|YP_003565281.1| FAD dependent oxidoreductase [Bacillus megaterium QM B1551]
 gi|294351518|gb|ADE71847.1| FAD dependent oxidoreductase [Bacillus megaterium QM B1551]
          Length = 423

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGG +G  A+  A + GA+  L          +    AI G G+ ++   +  +
Sbjct: 3   YDVVVIGGGPSGLMASIAAGESGANVLL----IDKGNKLGRKLAISGGGRCNVTNRL-PI 57

Query: 66  DGLM------GRVADAAGIQF---RVLNVKKGPAVRGPRTQADRELYRLAMQREI----- 111
           D L+      GR   +A   F    +++  +G  ++       R        + +     
Sbjct: 58  DELIKHIPGNGRFLYSAFSVFNNEDIISYFEGLGIKLKEEDHGRMFPVSNKAQSVVDALI 117

Query: 112 --LSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             L +  + +     V   N E N +  +V+Q+   I+  +VV+  G
Sbjct: 118 SELHRLRVTIRTNTAVKRVNYENNTVKEVVLQNGEAIQTKSVVIAVG 164


>gi|121078446|gb|ABM47385.1| FixC [Rhizobium leguminosarum bv. trifolii]
          Length = 435

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 47/174 (27%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M +  +D IV+G G +G  AA   A  G                     L       I  
Sbjct: 1   MRDEKFDAIVVGAGMSGNAAAYAMAIRGLKVLQLERGEYPGSKNVQGAILYADAIERIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
              + A       HLV E       +       GI +R  +  +    R  R    R  +
Sbjct: 61  DFRDDAPLER---HLV-EQRFW---IMDGTSHTGIHYRSDDFNE---RRPNRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFN-TEKNIISSIVM-QDNSMIRCSTVVLTTG 155
                 ++       + +           + +  +   +    I    VVL  G
Sbjct: 111 DRWFSAKVREAGCTVLCETMATKLIKDSNDNVKGVFTDRSGDTILADVVVLAEG 164


>gi|241889215|ref|ZP_04776518.1| HI0933-like protein [Gemella haemolysans ATCC 10379]
 gi|241864052|gb|EER68431.1| HI0933-like protein [Gemella haemolysans ATCC 10379]
          Length = 381

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 110/416 (26%), Gaps = 120/416 (28%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG G AG   A      G    ++               + G G+ +++   +A
Sbjct: 2   KYDVIVIGLGSAGLMIADRLNDSGLKVLVLEQNR----RAGIKLLLTGNGRCNVMSSDNA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-- 122
            D                       AV   R    R  Y     ++   + NL + Q   
Sbjct: 58  ED--------------------FVAAVHNGRFL--RSAYHKYNVKKFFDKHNLKLKQENR 95

Query: 123 ---------------------------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                                      +V     E + +  +    ++    + VV   G
Sbjct: 96  RLYPASEKSRDVVNAFKIDHAKINYKEKVEDLVFEDDKLVGVKTNVDTYYGKNVVVCAGG 155

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
                         P          SL     K      ++     A +           
Sbjct: 156 -----------KTYP----QSGSDGSLHRILKKHGVKITKIYPSEVALVFEDFRELSGVA 200

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
            Q              ++ +++        N  +  ++  +   S   S  +  +  RY 
Sbjct: 201 LQ------------NVRMFHKK--------NERSGDLLFTHKGLSGPLSISMGEFVARYP 240

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDV-------VYPNGISTALPEEIQHQFIR---- 324
                    + + N  ++F +    N  +        Y   I    PE +  + +R    
Sbjct: 241 EDKFYLDF-YPDLNEEELFAKLWEDNKFLNGKLPKSFYNFMIEKHFPENVSKKELRKFVT 299

Query: 325 -----------TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
                      T+P LE          ++   ++PK        KKI  L+ AG+I
Sbjct: 300 KIKRYELVDVKTMP-LEYA--FTTAGGVDLKVVSPKTCSH----KKIENLYFAGEI 348


>gi|209966943|ref|YP_002299858.1| Electron-transferring-flavoprotein dehydrogenaseFixC (essential for
           nitrogen fixation) [Rhodospirillum centenum SW]
 gi|209960409|gb|ACJ01046.1| Electron-transferring-flavoprotein dehydrogenaseFixC (essential for
           nitrogen fixation) [Rhodospirillum centenum SW]
          Length = 433

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 33/175 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           +   +  IV+G G +G  AA   AK G                     L       I   
Sbjct: 1   MREHFHAIVVGAGPSGNAAAYTLAKAGLKVLQIERGEYPGSKNVQGAILYADALERI--- 57

Query: 45  SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR--VLNVKKGPAVRGPRTQADREL 102
              P         L R +      M      AG  +R    N +K       R Q D+  
Sbjct: 58  --IPTFREDA--PLERHVVEQRIWMMDQDGHAGAHYRSSSFNEEKPNRYTIIRAQFDK-- 111

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNT-EKNIISSIVM-QDNSMIRCSTVVLTTG 155
                 R++ +   L + +  V      E   +  +V  ++N ++    V+L  G
Sbjct: 112 ---WFSRQVQAAGALVICETTVTALLRGENGRVEGVVTDRENGVVTADIVILAEG 163


>gi|116623101|ref|YP_825257.1| hypothetical protein Acid_4005 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226263|gb|ABJ84972.1| hypothetical protein Acid_4005 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 636

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 35/240 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V GGG AG  AA  AA+ GA   L          +     +GG     +   +   +
Sbjct: 56  DVLVAGGGLAGVCAAISAARHGARVVL----------VQDRSRLGGNSSSEVKMHVVGAN 105

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-VIQGEVA 125
               R           L +    A      Q   EL+ L +  +++S+ N+  +++  V 
Sbjct: 106 QHTARPGWRESGLIEELRL----ADAVNNPQRCWELWDLMLYDKVVSEPNITLLLETTVF 161

Query: 126 GFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               ++  I  +       +    IR +     TG    G+              ++ + 
Sbjct: 162 AATVKQGKIVEVAARCDKSEHLYRIRAAMFCDCTGDSRLGL--------------EAGAE 207

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIW-DKTEKQFADERLIPFSFMTDKITNRQIE 239
                  + +F           R  G +I++  +            ++    K   R   
Sbjct: 208 MRSGRDARAEFGESLAPETPENRTLGSSILFTSRLYHNPMPFTPPAWARKITKEQLRHRP 267


>gi|315646960|ref|ZP_07900074.1| monooxygenase FAD-binding protein [Paenibacillus vortex V453]
 gi|315277612|gb|EFU40937.1| monooxygenase FAD-binding protein [Paenibacillus vortex V453]
          Length = 383

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++  DVIVIG G AG   A   AK G  T L+
Sbjct: 1  MSKEMDVIVIGAGIAGSSCALQLAKQGHRTLLL 33


>gi|229816152|ref|ZP_04446463.1| hypothetical protein COLINT_03199 [Collinsella intestinalis DSM
           13280]
 gi|229808278|gb|EEP44069.1| hypothetical protein COLINT_03199 [Collinsella intestinalis DSM
           13280]
          Length = 649

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV+V+G G AG EAA +AA+ G    L+
Sbjct: 383 DVLVVGAGPAGMEAAYIAARRGHHVVLV 410


>gi|6685403|sp|O48651|ERG1_PANGI RecName: Full=Squalene monooxygenase; AltName: Full=Squalene
           epoxidase; Short=SE
 gi|2804278|dbj|BAA24448.1| squalene epoxidase [Panax ginseng]
          Length = 539

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   A  G    +I         I      P     +  LG    V
Sbjct: 76  DVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCV 135

Query: 60  REIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA    G    + D    +      K    V G      R  +   M+ +  S  N+
Sbjct: 136 NEIDAQRVFGYALYM-DGKNTRLSYPLEKFHSDVAGRSFHNGR--FVQRMREKAASLPNV 192

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     +K  +  +    +D   +  
Sbjct: 193 RMEQGTVTSLVEKKGSVKGVQYKTKDGQELSA 224


>gi|295706929|ref|YP_003600004.1| FAD dependent oxidoreductase [Bacillus megaterium DSM 319]
 gi|294804588|gb|ADF41654.1| FAD dependent oxidoreductase [Bacillus megaterium DSM 319]
          Length = 423

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 22/167 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGG +G  A+  A + GA+  L          +    AI G G+ ++   +  +
Sbjct: 3   YDVVVIGGGPSGLMASIAAGESGANVLL----IDKGNKLGRKLAISGGGRCNVTNRL-PI 57

Query: 66  DGLM------GRVADAAGIQF---RVLNVKKGPAVRGPRTQADRELYRLAMQREI----- 111
           D L+      GR   +A   F    +++  +G  ++       R        + +     
Sbjct: 58  DELIKHIPGNGRFLYSAFSVFNNEDIISYFEGLGIKLKEEDHGRMFPVSNKAQSVVDALI 117

Query: 112 --LSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             L +  + +     V   + E N +  +V+Q+   I+  +VV+  G
Sbjct: 118 SELHRLRVTIRTNTAVKRVHYENNTVKEVVLQNGEAIQTKSVVIAVG 164


>gi|223040687|ref|ZP_03610956.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
 gi|222878051|gb|EEF13163.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
          Length = 516

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 53/182 (29%), Gaps = 42/182 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI--GGLGKGH-- 57
            +  YDVIVIG G AG  A   A + G    ++      +G    N  I  G +   +  
Sbjct: 38  FDEEYDVIVIGSGFAGSMATLKALERGLKVLMV----EKMGRSGGNSVINVGNMAVPNNE 93

Query: 58  LVREIDALDGLMGRVADAAGIQF-------------------------------RVLNVK 86
             +E    D     +AD                                     +V++  
Sbjct: 94  YQKEKGIKDSKELFIADCLKDGLNLNHVDLLEVIYDRANEAYEYLKTIGVEFSSKVISAS 153

Query: 87  KGPAVRGPRTQ-ADRELYRLAMQREILSQENLDVIQGEVAG--FNTEKNIISSIVMQDNS 143
               +R  + + A    Y   M ++I    N  + +          E   +  +  ++N 
Sbjct: 154 GHSVMRAVQVKVASGSGYIRPMHKKIEENPNALIKKRTKFDEFVLDESGRVVGVKCRENY 213

Query: 144 MI 145
             
Sbjct: 214 KF 215


>gi|229820359|ref|YP_002881885.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Beutenbergia cavernae DSM 12333]
 gi|229566272|gb|ACQ80123.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Beutenbergia cavernae DSM 12333]
          Length = 472

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 31/201 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----------SCNPAIGGLGKGH 57
           V+V+G G +G  AA  AA+ GA   ++       G +           C  +    G+  
Sbjct: 18  VLVVGAGPSGLSAALSAARNGAQVRVV----ERFGFVGGNLTAGLVGPCMTSFSLDGRTQ 73

Query: 58  LVRE--------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
           LVR         ++A  G +      +G  F    +  G       T  D E  +     
Sbjct: 74  LVRGIFDEFVRRMEAEGGAVHPSRVRSGTDFA-GFMGFG---HERVTPFDPESAKAVALE 129

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVM--QDNSMI-RCSTVVLTTGTFLRGVIHIGK 166
            +       ++   VA   T+   I  +V+  +D         VV  TG     V     
Sbjct: 130 MLQEAGVELLLHTFVADVVTDGRRIRGVVVANKDGLGYLPADVVVDCTGD--GDVAARAG 187

Query: 167 LKIPAGRMGDSPSNSLFNSFM 187
            ++  GR GD     +   F 
Sbjct: 188 AEVAYGRDGDGAVQPMTLFFR 208


>gi|192291324|ref|YP_001991929.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285073|gb|ACF01454.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhodopseudomonas palustris TIE-1]
          Length = 398

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVR 60
            SYD IV+GGG AG  AA   A +GA TALI  +        +     +I  L +  + R
Sbjct: 9   NSYDAIVVGGGPAGLTAAIALADIGAVTALIARQVPYGDNRTTALLGDSIDILDRLDVWR 68

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE--- 115
                A      R+ D  G   R   VK            D   Y +  +  ++  E   
Sbjct: 69  RCSSKAAALRSMRLVDDTGRLIRAPEVKF----ASDEIGMDAFGYNIENRALLVGLEERA 124

Query: 116 ----NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               NL     E        + +  + M+    +    VV   G
Sbjct: 125 AELSNLQRFDDEAESVVPGDDEVI-VRMRGGRTVSAKLVVGADG 167


>gi|266622368|ref|ZP_06115303.1| thioredoxin-disulfide reductase [Clostridium hathewayi DSM 13479]
 gi|288865914|gb|EFC98212.1| thioredoxin-disulfide reductase [Clostridium hathewayi DSM 13479]
          Length = 343

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIV+G G AG  AA  AA+      ++      +G      +      G    +
Sbjct: 1   MRGQYDVIVVGAGPAGLSAALYAARAKYRVLVLE--KEKMGGQITITSEIVNYPGVEKTD 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
              L   M R A+A G +F +                                       
Sbjct: 59  GTELTEQMRRQAEAFGAEFAM--------------------------------------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EV G + + + I ++        R   +VL  G   R +  +G+ +   
Sbjct: 80  AEVTGIDLDGD-IRTVKTDKG-EYRAPGIVLAVGANPRKLGFVGEREYQG 127


>gi|146304719|ref|YP_001192035.1| dihydrolipoamide dehydrogenase [Metallosphaera sedula DSM 5348]
 gi|145702969|gb|ABP96111.1| dihydrolipoamide dehydrogenase [Metallosphaera sedula DSM 5348]
          Length = 449

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA-IGGLGKGHLVREID 63
            +DVIVIGGG AG  AA  A++LG S AL+      +G    N A I        V+ ++
Sbjct: 2   DFDVIVIGGGVAGVSAALRASELGKSVALVE--RDQVGGECINRACIPSKTLIDAVKTVN 59

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +      V+ A    +  LN  K    R      DR  + L  +       N+ VI+G 
Sbjct: 60  RVSSSPWIVSSATLD-YAKLNENK---ARIITAIKDRMEHNLNAR-------NVKVIKGN 108

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  K      V  D   I    +VL+TG+
Sbjct: 109 A------KIKAQGEVEVDGRTITGDHLVLSTGS 135


>gi|148556701|ref|YP_001264283.1| hypothetical protein Swit_3800 [Sphingomonas wittichii RW1]
 gi|148501891|gb|ABQ70145.1| HI0933 family protein [Sphingomonas wittichii RW1]
          Length = 391

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 11/145 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           S+DVI+IG G AG   A  A + G    L+ H     G+      I G G+ +     +A
Sbjct: 2   SHDVIIIGAGAAGLMCALTAGQRGRRVLLLDH-LDRTGA---KILISGGGRCNFT---NA 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             GL  R   A     R    +  PA        DR  + +A   + L Q   D    +V
Sbjct: 55  NGGLAERYLSANPHFARSALGRYRPADVID--LVDR--HGIAWHEKTLGQLFCDGSARQV 110

Query: 125 AGFNTEKNIISSIVMQDNSMIRCST 149
                E+     +  +  + I   +
Sbjct: 111 VAMLEEECAAGGVETRLLARIAAIS 135


>gi|78358159|ref|YP_389608.1| hypothetical protein Dde_3119 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220564|gb|ABB39913.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 463

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 145/483 (30%), Gaps = 138/483 (28%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK-LGASTALI---------------THKTSTIGSMSCNP 48
           ++DVI++GGG AG  AA   A+  G S  LI               T K           
Sbjct: 7   NFDVIIVGGGPAGLFAAYYLAEHSGLSVCLIERGNAARKRNCPINKTQKCIKCKPCHILS 66

Query: 49  AIGG-----LGKGHLVREIDALD-------GLMGRVADAAGIQFRVLNVKKGP------- 89
            +GG      GK + + ++   D            + D   + F    +  GP       
Sbjct: 67  GMGGGGLFSDGKLNFIHKLGKTDLTQFLPRSKAEELIDETELIFNRFGM-DGPVYPSNLE 125

Query: 90  AVRGPRTQADR---------------ELYRLAMQREI--LSQENLDVIQG-EVAGFNTEK 131
           A R  R Q+ +               +     + R    L++  + +  G EV     E 
Sbjct: 126 AARLLRKQSKKHGIDLLLIKQKHLGSDCLPEHIARMCDYLTESGVTIRTGEEVKNVVAEN 185

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
             I  +V        C  V+L  G                       ++ +      F  
Sbjct: 186 GQIQGLVTDKGQ-YTCRAVILAPG--------------------RVGADWVGEVCRSFGL 224

Query: 192 DTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLET-- 249
              +       R++    I   T     D     F          +  C    TN     
Sbjct: 225 QVSQRGIEVGVRVEVHNDIMSDTTDIIYD--PTFFVQTKTYDDQTRTFC----TNPAGFI 278

Query: 250 -----HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI---------------------- 282
                   +  N         +  ++       + D +                      
Sbjct: 279 ALENYQDFVCVNGHAYRNKKSENTNFAFLSKVVLTDPVSDNTGYGTAIGKLATIIGGGKP 338

Query: 283 --VRFGE--RNGHQIF-------LEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
              RFG+  R+    +       +EP    T+VV P  I+ ALPE I       + GLE+
Sbjct: 339 ILQRFGDLKRSRRSTWNRISKGYIEPT--LTNVV-PGDIAMALPERI---VTNLVEGLEQ 392

Query: 332 VNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQINGTTGY-EEAAAQ 381
           +N + PG        YA E  +   + E    LET  I GLF+AG   G  G    AAA 
Sbjct: 393 LNHVLPGISNEETLLYAPEIKFFATQVETDNCLET-GIRGLFVAGDGPGVAGNIVSAAAT 451

Query: 382 GLV 384
           GL+
Sbjct: 452 GLI 454


>gi|299535390|ref|ZP_07048712.1| hypothetical protein BFZC1_05188 [Lysinibacillus fusiformis ZC1]
 gi|298729151|gb|EFI69704.1| hypothetical protein BFZC1_05188 [Lysinibacillus fusiformis ZC1]
          Length = 416

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 142/442 (32%), Gaps = 83/442 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VR 60
           YDVIVIGGG +G  AA  A +      L          +    AI G G+ ++     V 
Sbjct: 2   YDVIVIGGGPSGLMAAIAAGERKKKVLL----LEKGTKLGKKLAISGGGRCNVTNRLPVE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY--------RLAMQREIL 112
           EI       GR   +    +   ++       G   + +            +  +   I 
Sbjct: 58  EIVKHIPGNGRFLYSPFTVYNNEDIIAFFEGLGVALKEEDHGRMFPVSNRAQDVVDALIR 117

Query: 113 SQENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT--------TGTFLRGV 161
             + L +   +   V+    +++ I  + + D + +R   VV+         TG+   G 
Sbjct: 118 QLQRLHIEVRLHTAVSKLLMDEDKILGVRLADGTEVRSQAVVVAVGGKAVPQTGSTGDGY 177

Query: 162 IHIGKL--KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
               +    I      + P  S  +     +     L+    + L+ K            
Sbjct: 178 PWAERAGHTITTLFPTEVPVISKEDFIQARELQGLALRDVAVSVLNKKG---KTLVTHQM 234

Query: 220 DERLIPFSFMTDKITN--RQIECGITRTNLE--THRI---IMENIKHSAIYSGDIKSYGP 272
           D     F      I    + +   + +T  E  T RI   +  N +    Y   +    P
Sbjct: 235 DMLFTHFGLSGPAILRCSQFVVKELMKTGYEPVTMRIQTLVHYNEETCLQYLNKLIKEDP 294

Query: 273 RYCP-SIEDKIVRFGER------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
           +    ++   I    ER          I ++  G              L +E   Q  R 
Sbjct: 295 KKAVKNVWKGIA--PERWLLFLCERAHIDVQLTGAE------------LSQEKIRQLARL 340

Query: 326 I----------PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY 375
           +            L+K  +   G +++   I PK    T+ +KK  GLF  G+I    GY
Sbjct: 341 LVNFTLKVSGTQSLDKAFVTGGGVSVKE--IEPK----TMASKKKEGLFFCGEILDIHGY 394

Query: 376 ------EEAAAQGLVAGINSAR 391
                   A   G +AG+++A 
Sbjct: 395 TGGYNITSALVTGRIAGMHAAL 416


>gi|73670860|ref|YP_306875.1| geranylgeranyl reductase [Methanosarcina barkeri str. Fusaro]
 gi|121723332|sp|Q465Z7|GGR_METBF RecName: Full=Digeranylgeranylglycerophospholipid reductase;
           Short=DGGGPL reductase; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate
           reductase; AltName: Full=Geranylgeranyl reductase;
           Short=GGR
 gi|72398022|gb|AAZ72295.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase [Methanosarcina
           barkeri str. Fusaro]
          Length = 407

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 55/169 (32%), Gaps = 27/169 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   YDV+VIG G AG  AA  AA+ G    LI  +      + C     G+ K +L + 
Sbjct: 1   MKDMYDVLVIGAGPAGSIAARTAAEKGLDVLLIEKRQEIGDPVRCAE---GVNKAYLKKY 57

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNVKK---------GPAVRGP-RTQADRELYRLAMQR 109
            EID         AD +       +  K         G       R   DR L   A + 
Sbjct: 58  VEIDKR----WICADLSASHIYAPDGTKIEMAEELSGGEVGYVLERKVFDRALAEKAAEA 113

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMI--RCSTVVLTTG 155
               +     ++    G   E + +    +         R   V+   G
Sbjct: 114 GAEVR-----VKTRATGLIIEDDFVKGARLMHLGKEYDVRAKIVIGADG 157


>gi|14591219|ref|NP_143295.1| thioredoxin reductase [Pyrococcus horikoshii OT3]
 gi|3257849|dbj|BAA30532.1| 336aa long hypothetical thioredoxin reductase [Pyrococcus
           horikoshii OT3]
          Length = 336

 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 36/171 (21%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI+IG G AG  AA  AA+ G  T +IT                           
Sbjct: 21  SKVWDVIIIGAGPAGYTAAIYAARFGLDTIIITKDL------------------------ 56

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G M  + D       ++    G       ++  +++Y    +  +    +  +   
Sbjct: 57  ---GGNMA-ITD-------LIENYPGFPEGISGSELSKKMYDQVKKYGVEVIIDEVIRID 105

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                  E      +   +    +  T+++  G   R  +++   K   GR
Sbjct: 106 PAECAYYEGPCNFVVKTANGKEYKAKTIIIAVGAEPR-KLNVPGEKEFTGR 155


>gi|209572890|sp|Q8PU50|GGR_METMA RecName: Full=Digeranylgeranylglycerophospholipid reductase;
           Short=DGGGPL reductase; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate
           reductase; AltName: Full=Geranylgeranyl reductase;
           Short=GGR
          Length = 407

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 55/166 (33%), Gaps = 21/166 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   YDV+VIG G AG  AA  AA+ G    LI  +      + C     G+ K  L + 
Sbjct: 1   MKDKYDVLVIGAGPAGSIAAKTAAEKGLDVLLIEKRQEIGDPVRCAE---GVNKECLKKH 57

Query: 61  -EIDA------LDGLMGRVADAAGIQFRVLNVKKGPAVRGP-RTQADRELYRLAMQREIL 112
            EID       L G      D   I+     +  G       R   DR L   A      
Sbjct: 58  VEIDKRWICADLKGSCIFSPDGTKIEMAE-EISGGEVGYVLERKVFDRALAEHAATAGAE 116

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMI--RCSTVVLTTG 155
            +     ++    G   E + +    +         R S V+   G
Sbjct: 117 VR-----VKTRATGLIIEDDFVKGARLMHLGKEYEVRASIVIGADG 157


>gi|21228601|ref|NP_634523.1| geranylgeranyl reductase [Methanosarcina mazei Go1]
 gi|20907096|gb|AAM32195.1| Geranylgeranyl reductase [Methanosarcina mazei Go1]
          Length = 417

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 55/166 (33%), Gaps = 21/166 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +   YDV+VIG G AG  AA  AA+ G    LI  +      + C     G+ K  L + 
Sbjct: 11  MKDKYDVLVIGAGPAGSIAAKTAAEKGLDVLLIEKRQEIGDPVRCAE---GVNKECLKKH 67

Query: 61  -EIDA------LDGLMGRVADAAGIQFRVLNVKKGPAVRGP-RTQADRELYRLAMQREIL 112
            EID       L G      D   I+     +  G       R   DR L   A      
Sbjct: 68  VEIDKRWICADLKGSCIFSPDGTKIEMAE-EISGGEVGYVLERKVFDRALAEHAATAGAE 126

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMI--RCSTVVLTTG 155
            +     ++    G   E + +    +         R S V+   G
Sbjct: 127 VR-----VKTRATGLIIEDDFVKGARLMHLGKEYEVRASIVIGADG 167


>gi|56479256|ref|YP_160845.1| dihydrolipoamide dehydrogenase [Aromatoleum aromaticum EbN1]
 gi|56315299|emb|CAI09944.1| 2-oxoglutarate dehydrogenase complex, E3 component,
          Dihydrolipoamide dehydrogenase [Aromatoleum aromaticum
          EbN1]
          Length = 476

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGS---------MSCNPA 49
          M ++ +DV+VIGGG  G  AA  AA+LG  TA           G          + C P+
Sbjct: 1  MADKQFDVLVIGGGPGGYVAAIRAAQLGFKTACAESNPYADPKGEPRLGGTCLNVGCIPS 60

Query: 50 IGGLGKGHLVREID 63
             L   HL  E +
Sbjct: 61 KALLHTSHLFEEAE 74


>gi|313903992|ref|ZP_07837372.1| HI0933 family protein [Eubacterium cellulosolvens 6]
 gi|313471141|gb|EFR66463.1| HI0933 family protein [Eubacterium cellulosolvens 6]
          Length = 418

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 123/443 (27%), Gaps = 86/443 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           V+V+GGG +G  AA  AA++GA   ++       G         G GK +L     +   
Sbjct: 5   VLVVGGGPSGLMAAITAARVGAKVTVLEAN-EKPG---RKLLATGNGKCNLTNMRMDPSV 60

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREILSQENLDVIQG 122
             G            F    V    +  G  T  +A     R      +     LD++  
Sbjct: 61  YRGNDTEFIRKVISHFDEEQVLGFFSEIGLATINKAGWVYPRTEQASAV-----LDLLLM 115

Query: 123 EVAGFNT-----------------EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           E A                     E   + S+            V++  G+    V    
Sbjct: 116 EAADLKIKIKTNERAEKIHKELTPEGESVFSVKTGT-WQYTADAVIIACGSPASAVRGSS 174

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR--------LDGKTIIWDKTEKQ 217
                              + +               R        +DGK +  D  E Q
Sbjct: 175 DDLNGFADFFQIRREDFLPALVPLKVKGDFTGKWAGTRTHASVTLVVDGKKVAKDTGELQ 234

Query: 218 ---FADERLIPFS--------FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGD 266
              +    +  F              +    +      T  E    +   +++    +  
Sbjct: 235 LTEYGISGIPVFQISRFAVHACRDKSLVEAVLNFFPEWTEEELRDELATRVENRPDKTMA 294

Query: 267 IKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR-- 324
               G      I   I +   R+         G +T     N  +  L + ++    R  
Sbjct: 295 QMLVGLLPEKLIPIFIAQLTGRS---------GQDTR----NLSAAQLEDWLKRAAYRLR 341

Query: 325 ----TIPG---LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE 377
                I G   L +  I   G   E       EL  ++E++ ISGLF  G+     G   
Sbjct: 342 HFKVKIAGAASLGQAQICSGGVLAE-------ELKESMESRSISGLFFCGESVDADGPCG 394

Query: 378 ------AAAQGLVAGINSARKSN 394
                 A + G  AGI++A K  
Sbjct: 395 GYNLQWAWSSGYTAGISAAYKGR 417


>gi|296108998|ref|YP_003615947.1| geranylgeranyl reductase [Methanocaldococcus infernus ME]
 gi|295433812|gb|ADG12983.1| geranylgeranyl reductase [Methanocaldococcus infernus ME]
          Length = 391

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  SYD+IV+G G  G  +A  ++KLGA T L+         + C  AI   G  +L  E
Sbjct: 4  LKESYDIIVVGAGPGGSCSAYASSKLGAKTLLVEKSQEIGEPVRCAEAI--PGLENLGIE 61

Query: 62 ID 63
          +D
Sbjct: 62 LD 63


>gi|254225597|ref|ZP_04919206.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621917|gb|EAZ50242.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 398

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 121/404 (29%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++  DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKKVDVVIIGAGAAGLMCAAQAAQRGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  EIDALDGLMGRV--------ADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
              +    + +         +      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSSANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAYEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
               +Q N++  Q      +T  +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECNQPNIE--QRYQVEISTIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  +     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVITTTAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRI---IMENIKHSAIYSGDIK----SYGPR 273
           F    ++     QI    T     T      +    M N +  A  +  +K       P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAEMLNSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|296242118|ref|YP_003649605.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Thermosphaera aggregans DSM 11486]
 gi|296094702|gb|ADG90653.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Thermosphaera aggregans DSM 11486]
          Length = 456

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
           YDV+++G G AG E+A V A  G   A++  K    IG  +C  AIG
Sbjct: 2  KYDVVIVGAGVAGLESAIVLASKGFKVAVVESKPAEKIGDKTCGDAIG 49


>gi|320592421|gb|EFX04851.1| pentachlorophenol 4-monooxygenase [Grosmannia clavigera kw1407]
          Length = 643

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + +YDV V+G G AG   AAV ++LG  T ++  +              G   G   + I
Sbjct: 9   DENYDVCVVGAGPAGLMLAAVLSRLGIKTTVLDERPDRTAV--------GRADGIQPKTI 60

Query: 63  DALDGLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV- 119
           +    +MG   +      RV  + + +G         +    Y   +   +  Q  + + 
Sbjct: 61  ETFQ-MMGLGDELLRDGVRVHDICIWRGDDAAALHRVSREVHYPADVLDVL--QPYILLC 117

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRC 147
            QG + G   +        +Q + +   
Sbjct: 118 HQGMIEGLLLDDLEDCGGAVQRSHVFES 145


>gi|157364014|ref|YP_001470781.1| hypothetical protein Tlet_1152 [Thermotoga lettingae TMO]
 gi|157314618|gb|ABV33717.1| conserved hypothetical protein [Thermotoga lettingae TMO]
          Length = 441

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VREID 63
            YDVIV+GGG AG  +A  A ++G S  L+      +G +  N  +  +   H  +R+I 
Sbjct: 3   DYDVIVVGGGIAGVCSAVAAKRMGVSVLLLEKDM-ALGGVLTNALVNPMMTFHSPLRQI- 60

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               +   + D            K P                 +   +L QEN+D + G 
Sbjct: 61  -AGAIAQEIVDRLVKIKGSYGHIKDPIGFVKTITPFEPEKLKTVLINMLHQENVDYLFG- 118

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
                    ++S +  ++ ++ +     +     L G I+I 
Sbjct: 119 --------CLVSDVKTKNGTVTQIEVATMQKKINLNGKIYID 152


>gi|319787384|ref|YP_004146859.1| dihydrolipoamide dehydrogenase [Pseudoxanthomonas suwonensis
          11-1]
 gi|317465896|gb|ADV27628.1| dihydrolipoamide dehydrogenase [Pseudoxanthomonas suwonensis
          11-1]
          Length = 478

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DV+VIG G AG  AA  AA+LG  TA I       G     PA+GG 
Sbjct: 1  MAEQFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDG----KPALGGT 48


>gi|254521075|ref|ZP_05133130.1| dihydrolipoyl dehydrogenase [Stenotrophomonas sp. SKA14]
 gi|219718666|gb|EED37191.1| dihydrolipoyl dehydrogenase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DV+VIG G AG  AA  AA+LG  TA I       G     PA+GG 
Sbjct: 1  MAEQFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDG----KPALGGT 48


>gi|190575086|ref|YP_001972931.1| dihydrolipoamide dehydrogenase [Stenotrophomonas maltophilia
          K279a]
 gi|190013008|emb|CAQ46640.1| putative dihydrolipoyl dehydrogenase (E3 component of
          2-oxoglutarate dehydrogenase complex) [Stenotrophomonas
          maltophilia K279a]
          Length = 478

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DV+VIG G AG  AA  AA+LG  TA I       G     PA+GG 
Sbjct: 1  MAEQFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDG----KPALGGT 48


>gi|194366405|ref|YP_002029015.1| dihydrolipoamide dehydrogenase [Stenotrophomonas maltophilia
          R551-3]
 gi|194349209|gb|ACF52332.1| dihydrolipoamide dehydrogenase [Stenotrophomonas maltophilia
          R551-3]
          Length = 478

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DV+VIG G AG  AA  AA+LG  TA I       G     PA+GG 
Sbjct: 1  MAEQFDVVVIGAGPAGYHAAIRAAQLGLKTACIDAALGKDG----KPALGGT 48


>gi|258546107|ref|ZP_05706341.1| alkyl hydroperoxide reductase, F subunit [Cardiobacterium hominis
           ATCC 15826]
 gi|258518659|gb|EEV87518.1| alkyl hydroperoxide reductase, F subunit [Cardiobacterium hominis
           ATCC 15826]
          Length = 520

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAIGGLGKG 56
           DV+VIGGG AG  AA  AA+ G    L+          T     + S+         GK 
Sbjct: 218 DVVVIGGGPAGSSAAIYAARKGLKVTLVADRIGGQVKDTMDIENLISVPKTTGPELAGKL 277

Query: 57  HL 58
           H 
Sbjct: 278 HT 279


>gi|225854250|ref|YP_002735762.1| hypothetical protein SPJ_0680 [Streptococcus pneumoniae JJA]
 gi|225723495|gb|ACO19348.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
          Length = 391

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 135/424 (31%), Gaps = 80/424 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D IVIGGG AG  A   ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKNR----KLGKKLAGTGGGRCNVTNNGS 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDNLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPASDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G    +  I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKITELGGQVATQIEIVSVKKVDDQFVLKSADQTFTCEKLIVTTGG------KSYPS 169

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               G   +            F      L+      L      +     Q      +  S
Sbjct: 170 TGSTGFGHEIA--------RHFKHTITDLEAAESPLL----TDFPHKALQGISLDDVTLS 217

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE 287
           +    IT+  +      +     R        S +  G++ S       S E  +V F E
Sbjct: 218 YGKHVITHDLLFTHFGLSGPAALR------MSSFVKGGEVLSLDVLPQLS-EKDLVTFLE 270

Query: 288 RNGHQIFLE------PEGLNTDVVYPNGISTA---LPEEIQHQFIRTIP----------G 328
            N  +          PE       +  G       L E+ + Q +++I            
Sbjct: 271 ENREKSLKNALKTLLPE--RLAEFFVQGYPEKVKQLTEKEREQLVQSIKELKIPVTGKMS 328

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQG 382
           L K  + + G +++   INPK    TLE+K + GL   G+   IN  TG      A   G
Sbjct: 329 LAKSFVTKGGVSLKE--INPK----TLESKLVPGLHFTGEVMDINAHTGGFNITSALCTG 382

Query: 383 LVAG 386
            VAG
Sbjct: 383 WVAG 386


>gi|21242284|ref|NP_641866.1| dihydrolipoamide dehydrogenase [Xanthomonas axonopodis pv. citri
          str. 306]
 gi|21107712|gb|AAM36402.1| dihydrolipoamide dehydrogenase [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 478

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MSEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 48


>gi|29375981|ref|NP_815135.1| hypothetical protein EF1414 [Enterococcus faecalis V583]
 gi|29343443|gb|AAO81205.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 387

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 149/413 (36%), Gaps = 66/413 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV---- 59
           + +DVI++G G +G  A   AA+ GA   LI         +     + G G+ ++     
Sbjct: 2   KKFDVIIVGAGTSGMMATIAAAEAGAQVLLIEKNR----RVGKKLLMTGGGRCNVTNNRP 57

Query: 60  -REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREI 111
             EI +     G+   +A  QF   ++       G   + +             ++   +
Sbjct: 58  AEEIISFIPGNGKFLYSAFSQFDNYDIMNFFESNGIHLKEEDHGRMFPVTDKSKSIVDAL 117

Query: 112 LSQEN---LDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
            ++ N   + V  + +V     + + I  +  +    I    VVLTTG            
Sbjct: 118 FNRINELGVTVFTKTQVTKLLRKDDQIIGVETEL-EKIYAPCVVLTTG------------ 164

Query: 168 KIPAGRMG--DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA--DERL 223
               GR       +   +    K       L       +  +  I DKT +  +  D  L
Sbjct: 165 ----GRTYPSTGATGDGYKLAKKMGHTISPLYPTESPIISEEPFILDKTLQGLSLQDVNL 220

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
              +     + N Q++   T   +     +      S+  + ++   G      +   + 
Sbjct: 221 TVLNQKGKPLVNHQMDMLFTHFGISGPAALR----CSSFINQELTRNG---NQPVTVALD 273

Query: 284 RFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEY 343
            F  ++  ++  +       + +       L ++ Q    +T+P LEK  +   G  I  
Sbjct: 274 VFPTKSFEEVPAKQLTEKQRLSFVE-----LLKDFQFTVTKTLP-LEKSFVT--GGGISL 325

Query: 344 DYINPKELFPTLETKKISGLFLAGQ---ING-TTGYEEAAA--QGLVAGINSA 390
             + PK    T+E+K ++GLF AG+   ING T GY   AA   G VAG ++A
Sbjct: 326 KEVTPK----TMESKLVNGLFFAGELLDINGYTGGYNVTAAFVTGHVAGSHAA 374


>gi|13474880|ref|NP_106450.1| nitrogen fixation protein,fixC [Mesorhizobium loti MAFF303099]
 gi|14025636|dbj|BAB52236.1| nitrogen fixation protein; FixC [Mesorhizobium loti MAFF303099]
          Length = 435

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 19/169 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSM--SCNP 48
           MI   +D IV+G G +G  AA   A  G +   +                   M     P
Sbjct: 1   MIEEEFDAIVVGAGMSGNAAAYTMASQGLTVLQLERGEYPGSKNVQGAIMYADMLEQIIP 60

Query: 49  AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                    L R +      +       G+Q+R  +  +    +  R    R  +     
Sbjct: 61  DFRDDA--PLERHLVEQRFWVMDDTSHTGMQYRSDDFNE---AKPNRYTIIRAQFDKWFS 115

Query: 109 REILSQENLDVIQGEVAGFNTE-KNIISSIVMQD-NSMIRCSTVVLTTG 155
           R++       + +  V          +  +        I    VVL  G
Sbjct: 116 RKVRQAGATVLCETTVTELIRNASGKVIGVRTDRAGGPIYADVVVLAEG 164


>gi|332800187|ref|YP_004461686.1| 2,4-dienoyl-CoA reductase [Tepidanaerobacter sp. Re1]
 gi|332697922|gb|AEE92379.1| 2,4-dienoyl-CoA reductase (NADPH) [Tepidanaerobacter sp. Re1]
          Length = 629

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           +++V+GGG AG  AA  AAK G    L       +G   C
Sbjct: 368 NIVVVGGGPAGIMAALTAAKRGHKVTLFEKN-DRLGGALC 406


>gi|148243661|ref|YP_001219901.1| mercuric reductase [Acidiphilium cryptum JF-5]
 gi|146400224|gb|ABQ28759.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Acidiphilium cryptum JF-5]
          Length = 504

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKGHLVR 60
           YD+ ++G G AG EAA  AA+LG S ALI        +   GS+     I        +R
Sbjct: 34  YDIAIVGAGPAGLEAAEYAARLGFSVALIERNRLGGNSLNAGSVPSKAIICTARVCSTMR 93

Query: 61  EIDALDGLMGRVA----DAAGIQFRVLNVK 86
           + +A    +        D    + R +  +
Sbjct: 94  DAEAFGAPIPSAPSLDFDKVMARMRRIRTR 123


>gi|86739027|ref|YP_479427.1| hypothetical protein Francci3_0311 [Frankia sp. CcI3]
 gi|86565889|gb|ABD09698.1| conserved hypothetical protein [Frankia sp. CcI3]
          Length = 409

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 37/225 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M+  SYDV+++G G AG  AA    +       L+T K       +C   +G      L 
Sbjct: 1   MVRGSYDVVIVGAGPAGSVAAFALKRRNPRLRVLLTDKAVFPRDKACGDGLGAGAVAALR 60

Query: 60  REIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           R      GL+G V DA + +  RV       A     T A R+L    + REI     LD
Sbjct: 61  RL-----GLLGVVHDAISPLSVRVSGPDGTEATAVGPTVAGRDLSGYVLPREI-----LD 110

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIR-------CSTVVLTTGTFLR-----------G 160
                             + M++ +             +   TG+              G
Sbjct: 111 AR-------LVAAAREVGVEMREGTSYHSSELTGNSRVITFKTGSRSNSVEAALMIGADG 163

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
                +  +  GR  D  S+    S+ KF       +   P RLD
Sbjct: 164 AYSRVRRDLGVGRQDDRFSSIAMRSYAKFSDPRRAPQEVMPLRLD 208


>gi|84515557|ref|ZP_01002919.1| dihydrolipoamide dehydrogenase [Loktanella vestfoldensis SKA53]
 gi|84510840|gb|EAQ07295.1| dihydrolipoamide dehydrogenase [Loktanella vestfoldensis SKA53]
          Length = 464

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 23/165 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +++D+IVIG G  G  AA  AA+LG +  ++       I    G +     +     
Sbjct: 1   MAAKNFDLIVIGAGPGGYVAAIRAAQLGMNVVVVERENLGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+         + +V   +     V+   +G A +                + +L + 
Sbjct: 61  FHLMHRAKEFGLSVEKV---SYDLDAVVKRSRGVAKQMEGG-----------VKHLLKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLR 159
            + VI GE       K  +S +  +  +  +    +VL TG   R
Sbjct: 107 KVTVIMGEAT--IPAKGKVS-VKTEAGTEELTAKNIVLATGARAR 148


>gi|304386225|ref|ZP_07368558.1| thioredoxin-disulfide reductase [Pediococcus acidilactici DSM
          20284]
 gi|304327582|gb|EFL94809.1| thioredoxin-disulfide reductase [Pediococcus acidilactici DSM
          20284]
          Length = 307

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G AG  AA  A++   S  ++
Sbjct: 1  MAKQYDVIVIGAGPAGMTAALYASRANLSVLML 33


>gi|297571901|ref|YP_003697675.1| electron-transferring-flavoproteindehydrogenase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932248|gb|ADH93056.1| Electron-transferring-flavoproteindehydrogenase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 433

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 52/188 (27%), Gaps = 23/188 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +DVIV+GGG AG   A + A+ G    L                 GG+    ++ E
Sbjct: 4   IEYDFDVIVVGGGIAGSVCAYLLAQEGREVLL----IERGVEAGTKNLSGGIFYCRVMEE 59

Query: 62  IDA-LDGLMGRVADAAGIQFRVLNVKKG---------PAVRGPRTQADRELYRLAMQREI 111
           I                     LN +            A         R  +   +  + 
Sbjct: 60  IFPDFANTAPVERRITRNCLSFLNKESAVNIDYWDNRLAEPVNAVSVLRAKFDPWLAEQC 119

Query: 112 LSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            +   + V+ G  V     +   +  +       +R   VV   G      ++    +  
Sbjct: 120 ENV-GVTVMPGIKVDELLQDSGKVIGVR-AGEDELRARVVVAADG------VNSFLAQYA 171

Query: 171 AGRMGDSP 178
             R  D  
Sbjct: 172 NLRQKDPA 179


>gi|270290700|ref|ZP_06196924.1| thioredoxin-disulfide reductase [Pediococcus acidilactici 7_4]
 gi|270280760|gb|EFA26594.1| thioredoxin-disulfide reductase [Pediococcus acidilactici 7_4]
          Length = 307

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G AG  AA  A++   S  ++
Sbjct: 1  MAKQYDVIVIGAGPAGMTAALYASRANLSVLML 33


>gi|255321072|ref|ZP_05362242.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SK82]
 gi|255301896|gb|EET81143.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SK82]
          Length = 452

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T ++                            +  
Sbjct: 143 FDVLVIGGGPAGNTAAIYAARKGIRTGIVA---------------------------ERF 175

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +    D       + N       +GP+  A  E +    + +I    NL     +VA
Sbjct: 176 GGQVMDTMD-------IENFTSVTKTQGPKFAAAMEEHVREYEVDI---MNL----QKVA 221

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                +   +    + + + + +   TV+L+TG   R     G        +      D 
Sbjct: 222 SIKGAEETANGLVEVTLDNGARLESKTVILSTGARWRQMNVPGEQEYATRGVAYCPHCDG 281

Query: 178 P 178
           P
Sbjct: 282 P 282


>gi|75907159|ref|YP_321455.1| succinate dehydrogenase flavoprotein subunit [Anabaena variabilis
           ATCC 29413]
 gi|75700884|gb|ABA20560.1| succinate dehydrogenase subunit A [Anabaena variabilis ATCC 29413]
          Length = 578

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 44/202 (21%)

Query: 1   MINR-SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGL 53
           M+N   +DVI++GGG AGC AA   A+    L  +    TH     ++ +     A    
Sbjct: 1   MVNMLEHDVIIVGGGLAGCRAAVEIARTDPSLNVAVVAKTHPIRSHSVAAQGGMAASLKN 60

Query: 54  GKGHLVREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRT 96
                  E  A D + G   +AD   +                  VL   + P  R  + 
Sbjct: 61  VDSSDTWEAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHMGVLF-SRLPDGRIAQR 119

Query: 97  QA-----DRELYRL-----AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQ-- 140
                  DR  Y       A+  E+++   +  + + Q   V     E+N    +VM   
Sbjct: 120 AFGGHSHDRTCYAADKTGHAILHELVNNLRRYGVHIYQEWYVMRLILEENEAKGLVMYSL 179

Query: 141 -DN--SMIRCSTVVLTTGTFLR 159
            D    ++R   V+  TG + R
Sbjct: 180 LDGHIEVVRAKAVMFATGGYGR 201


>gi|261404706|ref|YP_003240947.1| hypothetical protein GYMC10_0840 [Paenibacillus sp. Y412MC10]
 gi|261281169|gb|ACX63140.1| HI0933 family protein [Paenibacillus sp. Y412MC10]
          Length = 425

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REI 62
            YD+IV+GGG +G  +   A + GAS  L          +     I G G+ ++   +E 
Sbjct: 3   DYDIIVVGGGPSGLMSCVAAGERGASVLL----IDKGDKLGRKLGISGGGRCNVTNAKEQ 58

Query: 63  DALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--- 116
           D L   +   GR   +A   +   ++       G R + +       +  +  S  N   
Sbjct: 59  DELIANIPGNGRFLYSAFQHWNNRDIMTFFEGLGIRLKEEDNGRMFPVTDKASSVVNALI 118

Query: 117 -------LDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   D+     V     E    + + ++   +I  S V++ TG
Sbjct: 119 GKVKELGTDIRTNSPVNRVLYENGRTAGVELKSGEVIHSSCVIIATG 165


>gi|160935450|ref|ZP_02082832.1| hypothetical protein CLOBOL_00345 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441808|gb|EDP19508.1| hypothetical protein CLOBOL_00345 [Clostridium bolteae ATCC
           BAA-613]
          Length = 474

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 16/158 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R +DV++IG G  G  AA  AA+ G    +I  K   IG    N      G       
Sbjct: 1   MAREFDVVIIGAGPGGYTAALKAAEFGLKVVVIEAK--KIGGTCVN-----RGCIPTKAL 53

Query: 62  IDALDGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           + A D   M +  D  G+    ++   G   +  ++   +  YR  ++       N++++
Sbjct: 54  LHASDMFHMMQSCDEFGVSTDFISFDFGKMQKYKKSAVVK--YRDGIKYGFEKL-NVEIV 110

Query: 121 QGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
            G        ++    + +++      R + V++ TG 
Sbjct: 111 YGTA---VLRRDRTVEVELKEGGREFFRGNAVIIATGA 145


>gi|262369428|ref|ZP_06062756.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          johnsonii SH046]
 gi|262315496|gb|EEY96535.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          johnsonii SH046]
          Length = 477

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHK-----GKPSLGGT 47


>gi|255318877|ref|ZP_05360103.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SK82]
 gi|262378867|ref|ZP_06072024.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SH164]
 gi|255304133|gb|EET83324.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SK82]
 gi|262300152|gb|EEY88064.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SH164]
          Length = 477

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHK-----GKPSLGGT 47


>gi|330684440|gb|EGG96164.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU121]
          Length = 450

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSCNPAIGGLGKGHLV 59
           +  +YD++VIG G  G  AA  AA+LG S A++   H   T  ++ C P+   L  G  V
Sbjct: 1   MASNYDLVVIGAGPGGYVAAIRAAQLGKSVAIVEKQHVGGTCLNVGCIPSKTLLEFGSQV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I A + L G   D   I +  L   K   V                  ++L + N+++
Sbjct: 61  HQIHAANDL-GITTDHLNIDYSCLFEHKNNIVHTLTGGV----------TQLLKKNNVEL 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           IQGE      +  +   +   +   ++   ++L TG+
Sbjct: 110 IQGEA---VVKDGLTIEV---NQQSLKAKDIILATGS 140


>gi|213401763|ref|XP_002171654.1| squalene monooxygenase [Schizosaccharomyces japonicus yFS275]
 gi|211999701|gb|EEB05361.1| squalene monooxygenase [Schizosaccharomyces japonicus yFS275]
          Length = 456

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 17/175 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPAIGGLGKGH 57
           +++S DVI+IG G  G        + G    +I    S     +G +     I  L K  
Sbjct: 1   MSQSADVIIIGAGVTGSALGCALGRQGRKVVVIERDMSEPDRIVGELLQPGGIEALAKIG 60

Query: 58  LVREIDALDGL--MGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           +   ++ +DG    G      G    V   N   G   +G      R  + + +++ + +
Sbjct: 61  IADTVEGIDGQWTQGYQVFQNGDSVSVPYPNSASGKQYQGIGFHYGR--FIMNLRKALAN 118

Query: 114 QENLDVIQGEVAGFNTE--KNIISSI-VMQDNS----MIRCSTVVLTTGTFLRGV 161
             N+ VI+            +++  +   +  S     I     V+  G F +  
Sbjct: 119 TPNVTVIEATANELVRNSTGDVVVGVSCTKKGSEKPTEIMAPLTVVCDGCFSKFR 173


>gi|167646717|ref|YP_001684380.1| dihydrolipoamide dehydrogenase [Caulobacter sp. K31]
 gi|167349147|gb|ABZ71882.1| dihydrolipoamide dehydrogenase [Caulobacter sp. K31]
          Length = 466

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           ++  +DV+VIG G  G  AA  A++LG  TA+I      +G +     C P    L  G 
Sbjct: 1   MSTEFDVVVIGAGPGGYVAAIRASQLGLKTAIIE--RENLGGICLNWGCIPTKALLKSGE 58

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +  ++  L G    V  A+    ++++  +G A       A            ++ +  +
Sbjct: 59  IFEQLSHLGGYGLSVEKASFDFAKIIDRSRGVAKTMSSGIA-----------FLMKKHKI 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGTFLR 159
           +V++GE        +    + ++      I+  +V+L +G   R
Sbjct: 108 EVVEGEAKLEKGSPSPKVDVALKAGGSRAIQAKSVILASGARAR 151


>gi|315656465|ref|ZP_07909354.1| 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493024|gb|EFU82626.1| 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 602

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK 55
           +YDVIV+G G AG  A+  AA+ G    ++         T K++ +  +  N     LG 
Sbjct: 19  TYDVIVVGSGAAGLSASLTAARRGLKVLMVEKSDQWGGSTSKSAGMVWVPGNNVFARLGG 78

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
                       +   V D    +     +++G
Sbjct: 79  SDSTDLGRQY--MKATVGDCTSDEMIDTFLEEG 109


>gi|315655618|ref|ZP_07908516.1| putative 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii ATCC
           51333]
 gi|315489682|gb|EFU79309.1| putative 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii ATCC
           51333]
          Length = 602

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK 55
           +YDVIV+G G AG  A+  AA+ G    ++         T K++ +  +  N     LG 
Sbjct: 19  TYDVIVVGSGAAGLSASLTAARRGLKVLMVEKSDQWGGSTSKSAGMVWVPGNNVFARLGG 78

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
                       +   V D    +     +++G
Sbjct: 79  SDSTDLGRQY--MKATVGDCTSDEMIDTFLEEG 109


>gi|304390758|ref|ZP_07372710.1| possible 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325641|gb|EFL92887.1| possible 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 602

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK 55
           +YDVIV+G G AG  A+  AA+ G    ++         T K++ +  +  N     LG 
Sbjct: 19  TYDVIVVGSGAAGLSASLTAARRGLKVLMVEKSDQWGGSTSKSAGMVWVPGNNVFARLGG 78

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
                       +   V D    +     +++G
Sbjct: 79  SDSTDLGRQY--MKATVGDCTSDEMIDTFLEEG 109


>gi|298345171|ref|YP_003717858.1| putative 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii ATCC
           43063]
 gi|298235232|gb|ADI66364.1| possible 3-oxosteroid 1-dehydrogenase [Mobiluncus curtisii ATCC
           43063]
          Length = 602

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGLGK 55
           +YDVIV+G G AG  A+  AA+ G    ++         T K++ +  +  N     LG 
Sbjct: 19  TYDVIVVGSGAAGLSASLTAARRGLKVLMVEKSDQWGGSTSKSAGMVWVPGNNVFARLGG 78

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
                       +   V D    +     +++G
Sbjct: 79  SDSTDLGRQY--MKATVGDCTSDEMIDTFLEEG 109


>gi|254420555|ref|ZP_05034279.1| hypothetical protein BBAL3_2865 [Brevundimonas sp. BAL3]
 gi|196186732|gb|EDX81708.1| hypothetical protein BBAL3_2865 [Brevundimonas sp. BAL3]
          Length = 393

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGH----LV 59
           +DV V+G G AG       A  G + ALI  +     +   +PA  G      H    L+
Sbjct: 7   FDVAVVGAGPAGLAFTRSLAGAGLTVALIEGQAE---AALRDPAFDGREIALTHNSIRLL 63

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-------ELYRLAMQREIL 112
           + +DA D +          + RVL+     A+      ADR        L R A+   + 
Sbjct: 64  KSLDAWDQVPAEEISDLR-EARVLDGGSPFALTFDAGGADRLGVLIPNHLIRRALFEVVE 122

Query: 113 SQENLDVIQG-EVAGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLR 159
            Q  + ++ G  VA    +       +V+ D + IR   +V     F  
Sbjct: 123 GQPGVTLMAGRRVASCAVQDAAPRGRVVLDDGTAIRAKLIVAADSRFSG 171


>gi|294630794|ref|ZP_06709354.1| monooxygenase, FAD-binding [Streptomyces sp. e14]
 gi|292834127|gb|EFF92476.1| monooxygenase, FAD-binding [Streptomyces sp. e14]
          Length = 431

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   AK G    L+  KT       C   +       LV     + 
Sbjct: 15  DVIVVGAGPAGSTTAYHLAKAGLDVLLLE-KTEFPREKVCGDGLTPRAVKQLVAMGIDIS 73

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +           +Q    ++   P   +   R   D +L R A +      E 
Sbjct: 74  EEAGWLRNKGLRIIGGGVRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYER 133

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
            +V +  V         I+ +  +              VV   G   R
Sbjct: 134 CNVGEPIVDD---RTGRITGVKAKLGEEKREVTFHAPLVVAADGNSTR 178


>gi|114776472|ref|ZP_01451517.1| hypothetical protein SPV1_02092 [Mariprofundus ferrooxydans PV-1]
 gi|114553302|gb|EAU55700.1| hypothetical protein SPV1_02092 [Mariprofundus ferrooxydans PV-1]
          Length = 539

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 46/169 (27%), Gaps = 19/169 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IVIG G AG  AA   A+ G    L+                    +G L  E +   G 
Sbjct: 102 IVIGAGPAGLFAALSLAEAGIRVTLLE--RGKPVETRMRDIGRLRSRGELNSESNICFGE 159

Query: 69  MGRVADAAGIQFRVLNVK------KGPAVRGPRTQADRELY--------RLAMQREILSQ 114
            G      G  +  +               G R     + +           ++      
Sbjct: 160 GGAGTYTDGKLYTRIKHPYLRWVLHTFVRFGARADILVDAHPHLGTDKLVRIVRNMREHL 219

Query: 115 ENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
             L V    +  V         ++ + + +   I    VVL TG   R 
Sbjct: 220 SGLGVDYRFESRVDDLLISAGAVTGVRITNGEEIDADHVVLATGHSARD 268


>gi|297616419|ref|YP_003701578.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144256|gb|ADI01013.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 513

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 41/204 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--------- 52
           + +  DV+V+G G AG  AA  AA  GA   L          +  +              
Sbjct: 36  LTKQADVVVVGAGMAGMSAAIEAASQGAKVIL----LEKQSVLGGSTNFAEGIFGCESPI 91

Query: 53  -----------------------LGKGHLVREIDALDGLMGRVADAAGIQFR-VLNVKKG 88
                                     G+L +++    G   +     G++F  V +   G
Sbjct: 92  QKEMGITVNQEELLREEFEFSNYRVDGNLWKDVMKHSGEDIQWLMDMGVKFETVTSTGAG 151

Query: 89  PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI--VMQDNSM-- 144
                        +    M+          +          +   ++ +    +D     
Sbjct: 152 NKTWHVYEGFGETVINEHMKPAAEKLGVEIMTSTPATELILKDGKVAGVKAKTKDGKELI 211

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLK 168
           I    VVL TG F      I +L 
Sbjct: 212 INAKAVVLATGGFANNKEMIYELT 235


>gi|294495914|ref|YP_003542407.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanohalophilus mahii DSM 5219]
 gi|292666913|gb|ADE36762.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanohalophilus mahii DSM 5219]
          Length = 396

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +  YDV+V+G G AG  AA  AA+ GAS  L+  K      + C
Sbjct: 4  DELYDVVVVGAGPAGSTAAMYAAQGGASVLLVDRKKDIGVPLQC 47


>gi|91771692|gb|ABE60738.1| squalene epoxidase [Panax notoginseng]
          Length = 537

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I   +     I      P     +  LG    V
Sbjct: 74  DVIIVGAGVAGSALAYTLAKDGRRVHVIERDSTEQDRIVGELLQPGGYLKLIELGLEDCV 133

Query: 60  REIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA    G    + D    +      K    V G      R  +   M+ +  S  N+
Sbjct: 134 NEIDAQRVFGYALYM-DGKNTRLSYPLEKFHSDVAGRSFHNGR--FVQRMREKAASLPNV 190

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     +K  +  +    +D   +  
Sbjct: 191 RMEQGTVTSLVEKKASVKGVQYKTKDGQELSA 222


>gi|315606994|ref|ZP_07882000.1| alkyl hydroperoxide reductase [Prevotella buccae ATCC 33574]
 gi|315251375|gb|EFU31358.1| alkyl hydroperoxide reductase [Prevotella buccae ATCC 33574]
          Length = 519

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + R YDV+V+GGG AG  AA  +A+ G   AL+ 
Sbjct: 211 VEREYDVVVLGGGPAGTSAAIYSARKGLKVALVA 244



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----VREID 63
           V V+GGG++G EAA   A + +   L+       G       +     G L    V  + 
Sbjct: 357 VAVVGGGNSGVEAAIDLAGICSKVTLLE-----FGEALRADTVLQEKIGSLPNVEVFTMS 411

Query: 64  ALDGLMG--------RVADAAGIQFRVLNVKKGPAVRGPRTQAD--RELYRLAMQREIL 112
              G++G        RV D    Q R + V       G    +D  R+   L  ++EI 
Sbjct: 412 QTIGVLGNGENVTALRVKDRNTDQEREIAVDGVFVQIGLAANSDPFRDHLPLNARKEIE 470


>gi|313649279|gb|EFS13713.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri 2a str. 2457T]
          Length = 429

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP--RTQADRELYRLAMQREILSQENLD 118
           E       +    +    + ++  + +  AV     R Q D  + + A    + ++ +  
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHRGQPD--VPQHASYTVLRNRLDPW 113

Query: 119 VIQGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +++              V     E N ++ +   D  ++  + V+L  G
Sbjct: 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|313158725|gb|EFR58112.1| FAD dependent oxidoreductase [Alistipes sp. HGB5]
          Length = 457

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID-AL 65
           DV+V+GGG AG  AA  A   G    L      + G +  N  IG    G+L R+ +  +
Sbjct: 22  DVLVVGGGPAGIMAARAATGKGLRVML----IESRGYLGGNLTIGLPILGYLGRKGNQII 77

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL     D    +       +   +    T  D E  +      +       ++    A
Sbjct: 78  KGLPQLFIDRLRARGAAGE-HRPCKLHVSLTIIDPEEAKTVALEMLQEVGVEVLLYVFCA 136

Query: 126 GFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                 + +  +V++       I   TV+  TG 
Sbjct: 137 DIVKNGDAVEGVVVESKAGREAILAKTVIDCTGD 170


>gi|288925867|ref|ZP_06419797.1| alkyl hydroperoxide reductase, F subunit [Prevotella buccae D17]
 gi|288337291|gb|EFC75647.1| alkyl hydroperoxide reductase, F subunit [Prevotella buccae D17]
          Length = 519

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + R YDV+V+GGG AG  AA  +A+ G   AL+ 
Sbjct: 211 VEREYDVVVLGGGPAGTSAAIYSARKGLKVALVA 244



 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----VREID 63
           V V+GGG++G EAA   A + +   L+       G       +     G L    V  + 
Sbjct: 357 VAVVGGGNSGVEAAIDLAGICSKVTLLE-----FGEALRADTVLQEKIGSLPNVEVFTMS 411

Query: 64  ALDGLMG--------RVADAAGIQFRVLNVKKGPAVRGPRTQAD--RELYRLAMQREIL 112
              G++G        RV D    Q R + V       G    +D  R+   L  ++EI 
Sbjct: 412 QTTGVLGNGENVTALRVKDRNTDQEREIAVDGVFVQIGLAANSDPFRDHLPLNARKEIE 470


>gi|171779205|ref|ZP_02920176.1| hypothetical protein STRINF_01053 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282261|gb|EDT47688.1| hypothetical protein STRINF_01053 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 390

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 136/422 (32%), Gaps = 76/422 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++     
Sbjct: 2   KLYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            +D LM      GR   +   QF   ++ +     G   +   E +     +   S+  +
Sbjct: 58  -IDDLMEGIPGNGRFLYSVFSQFDNHDIMRFFEENGVALKV--EDHGRVFPKTDKSKTII 114

Query: 118 DVIQGEVAGF---NTEKNIISSIVMQDNS--------MIRCSTVVLTTGTFLRGVIHIGK 166
           D +  +++           + S+   D             C  +++TTG           
Sbjct: 115 DALAHKISELGGTVLTNTEVVSVKKIDELFHLKSASDEFVCGKLIVTTGG------KAYP 168

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                G   +            F  +   L+      L      +   E Q      I  
Sbjct: 169 STGSTGFGYEIA--------RHFKLNLTELEAAESPLL----TDFPHKELQGISLSDISL 216

Query: 227 SFMTDKITNRQIECGITRTNLETHR---IIMENIKHS-----AIYSGDIKSYGPRYCPSI 278
           S+    IT+  +      +     R    I      +      I + D+ ++   +    
Sbjct: 217 SYRKHHITHDLLFTHFGLSGPAALRMSSFIKGGETITLDVIPNISTEDLLAFLEEHREKS 276

Query: 279 EDKIVR--FGERNG---HQIFLEPEGLNTD--VVYPNGISTALPEEIQHQFIRTIPGLEK 331
               ++    ER      Q F E     T            ALP ++  +       L K
Sbjct: 277 LKNTLKMLVPERLANFFAQPFPEKVKQLTPNQEKELVDKIKALPIKVAGKM-----SLAK 331

Query: 332 VNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLV 384
             + + G       ++ KE+ P TLE+K++ GL  AG+   IN  TG      A   G V
Sbjct: 332 SFVTKGG-------VDLKEINPKTLESKQVPGLHFAGEVLDINAHTGGFNITAALCTGWV 384

Query: 385 AG 386
           AG
Sbjct: 385 AG 386


>gi|30063034|ref|NP_837205.1| hypothetical protein S1649 [Shigella flexneri 2a str. 2457T]
 gi|30041283|gb|AAP17012.1| flavoprotein [Shigella flexneri 2a str. 2457T]
          Length = 429

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 22/169 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP--RTQADRELYRLAMQREILSQENLD 118
           E       +    +    + ++  + +  AV     R Q D  + + A    + ++ +  
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHRGQPD--VPQHASYTVLRNRLDPW 113

Query: 119 VIQGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +++              V     E N ++ +   D  ++  + V+L  G
Sbjct: 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|206557944|sp|O29786|GGR_ARCFU RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
          Length = 387

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          YDV+V+G G AG  AA  AA+ G    L+  +      + C   I    
Sbjct: 2  YDVVVVGAGPAGSMAAKTAAEQGLKVLLVEKRQEIGTPVRCAEGISRES 50


>gi|42520592|ref|NP_966507.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
           dehydrogenase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034638|ref|ZP_01314588.1| hypothetical protein Wendoof_01000597 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42410331|gb|AAS14441.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
           dehydrogenase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 459

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKG----H 57
            YD+IVIGGG  G + A  AAKLG   A I   +   G+   + C P+   L       H
Sbjct: 3   DYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAH 62

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-----L 112
              ++  L     ++ DA+     +L  K        +      L+ L    +I      
Sbjct: 63  TKNDLSKLG---IKIKDASFDLKEMLGYKDARVQELGKG--IEYLFNLHKITKINGLASF 117

Query: 113 SQENLDV-IQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            Q NL+V ++G+V    T+  +I++   ++      I   +++ +TG      +    + 
Sbjct: 118 DQGNLEVSVEGKV--LKTKNIVIATGSDVISLPGINIDEKSIISSTGALSLTEVPKKLVV 175

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
           I AG +G      + + + +   +   ++  
Sbjct: 176 IGAGAIGLE----MSSVWRRLGSEVTVVEFF 202


>gi|46198311|ref|YP_003978.1| hypothetical protein TTC0003 [Thermus thermophilus HB27]
 gi|46195933|gb|AAS80351.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 180

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +DVIV+GGG +G  AA   A+ G    ++    S +  ++  P   GL       E+
Sbjct: 2  WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVTRVPNYPGLLDEPSGEEL 58


>gi|188992182|ref|YP_001904192.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733942|emb|CAP52148.1| dihydrolipoyl dehydrogenase [Xanthomonas campestris pv.
          campestris]
          Length = 478

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MSEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAAIGKDG----KPALGGT 48


>gi|147673041|ref|YP_001218335.1| hypothetical protein VC0395_A2434 [Vibrio cholerae O395]
 gi|146314924|gb|ABQ19463.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227011918|gb|ACP08128.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 398

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 57/404 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ DV++IG G AG   AA AA+ G    L                I G G+ +   
Sbjct: 3   VMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLL----LDHAKKPGRKILISGGGRCNFTN 58

Query: 61  -EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQ 108
            ++ A + L          ++      F  L  K G A      G     D     + M 
Sbjct: 59  YDVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDML 118

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKL 167
                Q N++  Q      +   +      +Q     I C+++V+ TG      +     
Sbjct: 119 LSECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                     P  S     + F       +   P  L G  I   +   +          
Sbjct: 177 GYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALL 233

Query: 228 FMTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPR 273
           F    ++     QI    T     T      + +  +  S   +   +S         P+
Sbjct: 234 FTHRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPK 293

Query: 274 YCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKV 332
               +  +   F ++   Q    P+         + + T L    Q   +     G    
Sbjct: 294 RLVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTA 341

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 342 EVTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 378


>gi|21230940|ref|NP_636857.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66769058|ref|YP_243820.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|21112556|gb|AAM40781.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66574390|gb|AAY49800.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 478

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MSEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAAIGKDG----KPALGGT 48


>gi|89895541|ref|YP_519028.1| hypothetical protein DSY2795 [Desulfitobacterium hafniense Y51]
 gi|89334989|dbj|BAE84584.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 732

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +V+VIGGG AG EAA +AA  G    L         S+  N     + KG 
Sbjct: 475 NVMVIGGGPAGMEAARIAAARGHKVTLY----EKSSSLGGNLTFARMVKGP 521


>gi|297529166|ref|YP_003670441.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. C56-T3]
 gi|297252418|gb|ADI25864.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. C56-T3]
          Length = 585

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 107/616 (17%), Positives = 181/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +                 +G+ I    T     
Sbjct: 186 AFPADAVILATGGPGIIFGKS--TNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRIW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELNVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNKLD--CICFSRT----------------DSYIGVMIDDLTSK 418
            A   G+VAG N+ R    L+        T                 +  G     +  K
Sbjct: 394 SAIYGGMVAGPNAVRYIRGLEKSADAMPSTLYDSYVKREQEKWENILAMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      R   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDRLLKTDEKIQELMERYKNISVTDTSRWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYYRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPAFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     Y+ ++  
Sbjct: 568 SLIKPRKRDYSKKKEE 583


>gi|239833591|ref|ZP_04681919.1| FAD dependent oxidoreductase [Ochrobactrum intermedium LMG 3301]
 gi|239821654|gb|EEQ93223.1| FAD dependent oxidoreductase [Ochrobactrum intermedium LMG 3301]
          Length = 440

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV VIGGG AG  AA   A+ G   A++  ++   G+   N      G
Sbjct: 41 DVAVIGGGLAGLSAALQMARAGKKVAVLEAESIGFGASGRNGGFVSPG 88


>gi|94496884|ref|ZP_01303458.1| succinate dehydrogenase, flavoprotein subunit [Sphingomonas sp.
           SKA58]
 gi|94423560|gb|EAT08587.1| succinate dehydrogenase, flavoprotein subunit [Sphingomonas sp.
           SKA58]
          Length = 600

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 56/223 (25%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD +V+G G +G  A   +A+ G  TA IT     ++ T+ +      ++G    
Sbjct: 7   IIDHTYDTVVVGAGGSGLRATMGSAEAGLKTACITKLFPTRSHTVAAQGGIAASLGNNSP 66

Query: 56  GHLVREI-DALDG-----------LMGRVADAAGIQFR---------------------- 81
            H    + D + G            M R A AA I+                        
Sbjct: 67  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRNENGTIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-------VAGFNTEKNII 134
           + N+ +GP V+     ADR  +  AM   +  Q    +                 E    
Sbjct: 127 MQNMGEGPPVQRTCAAADRTGH--AMLHALYQQ---SLKYDADFYIEYFAIDLIMENGEC 181

Query: 135 SSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++   M+D S+   R   VVL TG + R            G
Sbjct: 182 RGVIAICMEDGSIHRFRAHAVVLATGGYGRAYFSATSAHSCTG 224


>gi|254476213|ref|ZP_05089599.1| dihydrolipoyl dehydrogenase [Ruegeria sp. R11]
 gi|214030456|gb|EEB71291.1| dihydrolipoyl dehydrogenase [Ruegeria sp. R11]
          Length = 464

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M   +YDVIVIG G  G  AA  AA+LG  T ++      +G +     C P    L   
Sbjct: 1   MAAETYDVIVIGAGPGGYVAAIRAAQLGLKTCVVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   ++       +  +       V+   +G A +                  ++ +  
Sbjct: 59  EVFHLMERAKDFGLKAENIGYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           +DV+ GE       K  +S +     +  +    +VL TG   R +
Sbjct: 108 IDVVMGEAT--IPAKGKVS-VKTDKGTQELSGKNIVLATGARAREL 150


>gi|169828339|ref|YP_001698497.1| hypothetical protein Bsph_2834 [Lysinibacillus sphaericus C3-41]
 gi|168992827|gb|ACA40367.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 628

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 28/146 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           I   YDVIVIGG   G  AA  +A+ GA T L+  +       T G ++    I   G  
Sbjct: 50  IESEYDVIVIGGEPEGVAAAVASARNGAKTLLVEKREELGGLFTYGMLNFLD-IPRDGHN 108

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + + E     G+     +         N   G               + A ++ I  + N
Sbjct: 109 NSISE-----GIFKEWHELVRG-----NDAFGIVGA-----------KAAFKKLIDEEPN 147

Query: 117 LDV-IQGEVAGFNTEKNIISSIVMQD 141
           L + +Q EV   N ++  ++S+ +++
Sbjct: 148 LTLSVQTEVVKTNLQQQQLNSVELKN 173


>gi|160880737|ref|YP_001559705.1| hypothetical protein Cphy_2605 [Clostridium phytofermentans ISDg]
 gi|160429403|gb|ABX42966.1| HI0933 family protein [Clostridium phytofermentans ISDg]
          Length = 407

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--- 62
           YD IVIGGG +G  AA  AA+ G   A+I H+      +       G GK +   ++   
Sbjct: 3   YDCIVIGGGASGMVAAIFAARRGQRIAIIEHR----ERLGKKILATGNGKCNYTNQVQTP 58

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY------RLAMQREILSQE- 115
           D   G     A A   QF V          G   +  R  Y      + A   ++L+ E 
Sbjct: 59  DCYRGTHPEFAMAVLRQFDVEQTIAFFQSLGIYPKL-RNGYVYPNSEQAAAVADVLAMEL 117

Query: 116 -NLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            NL V   ++  V     E      +  ++    RC+ V++ TG             +  
Sbjct: 118 KNLKVDVFLKEHVLNIEREDQGFL-LRTEEKKEYRCNKVIIATGGLAAPKQGSDGSGLKI 176

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
            R         F + ++   +    K  +  R+D K  ++ 
Sbjct: 177 LRKLGHTIIEPFPALVQLKAEGKFFKQISGVRIDAKGELFS 217


>gi|11498075|ref|NP_069300.1| bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
          [Archaeoglobus fulgidus DSM 4304]
 gi|2650164|gb|AAB90773.1| bacteriochlorophyll synthase, 43 kDa subunit (chlP-1)
          [Archaeoglobus fulgidus DSM 4304]
          Length = 410

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          YDV+V+G G AG  AA  AA+ G    L+  +      + C   I    
Sbjct: 25 YDVVVVGAGPAGSMAAKTAAEQGLKVLLVEKRQEIGTPVRCAEGISRES 73


>gi|239916601|ref|YP_002956159.1| 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
           [Micrococcus luteus NCTC 2665]
 gi|281414933|ref|ZP_06246675.1| 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
           [Micrococcus luteus NCTC 2665]
 gi|239837808|gb|ACS29605.1| 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
           [Micrococcus luteus NCTC 2665]
          Length = 405

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 30/169 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D +V+G G AG  A  + A+ G    ++                G       +R +D L 
Sbjct: 14  DCVVVGAGPAGMMAGLLLARRGVRVTVLEKHADFFRDFR-----GDTIHPSTMRVMDRLG 68

Query: 67  GLMGRVADAA-GIQFRVLNVKKGPAVRGPRTQAD---------------RELYRLAMQRE 110
                + D    I  R ++     A  G    AD               +  +   +  E
Sbjct: 69  -----IIDRFLAIPHRRMSTVSVAAPDGESVFADFSRLSEPYNYVAFMPQWDFLDFIAEE 123

Query: 111 ILSQENLD-VIQGEVAGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
             +  + + + + +V     + +    +     +    +    V+   G
Sbjct: 124 ARAYPSFELIREAQVTELLVDGDRARGVRYKTPEGERTLSARLVIGADG 172


>gi|62185537|ref|YP_220322.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila abortus
           S26/3]
 gi|62148604|emb|CAH64376.1| putative succinate dehydrogenase flavoprotein subunit
           [Chlamydophila abortus S26/3]
          Length = 627

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 94/322 (29%), Gaps = 47/322 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M      VIV+GGG AG  AA   A  G    L++          C    G     +L  
Sbjct: 1   MKAEGCKVIVVGGGLAGLSAAMKLADFGIVVDLVSLTKVKRSHSVCAQG-GINAALNLKH 59

Query: 61  E------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E      I A D + G   D    Q  VL +    A R  R     + +     R    Q
Sbjct: 60  EEQDSPYIHAYDTIKG--GDFLADQPPVLEMC-LAAPRIIRML---DNFGCPFNRI--PQ 111

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMI---RCSTVVLTTGTFLRGVIH--IGKLKI 169
            +LDV +    G    + +          M           + G   +   H  I  +  
Sbjct: 112 GDLDVRRF--GGTLYHRTVFCGASTGQQLMYILDEQVRRRESQGRVNKFENHEFIRLITN 169

Query: 170 PAGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            AGR       +LF N       D     TG P  +   +                   F
Sbjct: 170 SAGRACGIVLMNLFNNRLEVLKGDAVIFATGGPGVIFKMSTNST---------------F 214

Query: 229 MTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIEDKIVR 284
            T     R    G+T  N E  +I    +  I    + S  ++  G R + P    K + 
Sbjct: 215 CTGAANGRLFLQGMTYANPEFIQIHPTAIPGIDKLRLISESVRGEGGRVWVPGDSSKTII 274

Query: 285 FGERNGHQIFLEPEGLNTDVVY 306
           F +         P G      Y
Sbjct: 275 FPDGTR-----RPCGETGKPWY 291


>gi|323495440|ref|ZP_08100517.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           brasiliensis LMG 20546]
 gi|323310363|gb|EGA63550.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           brasiliensis LMG 20546]
          Length = 413

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 14/166 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGGLGKGHLVREIDA 64
           +DV VIGGG  G   A   AK G    L+  K      +             H V  +D 
Sbjct: 33  FDVAVIGGGMVGAAVAVGFAKQGRKVVLVEGKPPHDFSAEQAMDIRVSAISQHSVDILDE 92

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELY-------RLAMQREILS 113
           L G     +      +R L   + P  R          +R  Y       +L +  +   
Sbjct: 93  LGGWQ-TTSQMRVCPYRRLETWEHPECRTRFHSDELGMERLGYIVENRLIQLGLWAQFEK 151

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             NL +   +    + E   +S + +     +    VV   G   +
Sbjct: 152 YPNLTLRCPDTLA-DIEFGDVSKVTLSSGEELSADLVVGADGANSK 196


>gi|313126581|ref|YP_004036851.1| 2,3-di-o-geranylgeranylglyceryl phosphate reductase
          [Halogeometricum borinquense DSM 11551]
 gi|312292946|gb|ADQ67406.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Halogeometricum borinquense DSM 11551]
          Length = 457

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
             YDV+V+G G +GC AAA  A+ G    ++  KT    G ++C  A+ G
Sbjct: 4  THEYDVVVVGAGTSGCYAAATIAREGLDVVIVERKTADEAGHIACGDALKG 54


>gi|150389146|ref|YP_001319195.1| hypothetical protein Amet_1334 [Alkaliphilus metalliredigens QYMF]
 gi|149949008|gb|ABR47536.1| HI0933 family protein [Alkaliphilus metalliredigens QYMF]
          Length = 413

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 141/398 (35%), Gaps = 58/398 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           ++VIGGG AG  A+  A + GA   +       +  +       G G+ +L     ++  
Sbjct: 9   ILVIGGGAAGMIASIAATRQGAQVII----LEKMNRVGKKILATGNGRCNLTNIHTDLIH 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELY-----RLAMQREILSQEN-L 117
             G   +   +   QF V          G   + +  ++Y       ++   +  + N L
Sbjct: 65  FHGNNVQFIRSVLGQFSVEETINFFEYLGIAHKVEEGKVYPFSDQAASVLDVLRYEMNQL 124

Query: 118 DVIQ---GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKLKIP 170
            V +    EV   +  K   + + + +   I+   +++TTG      +        L  P
Sbjct: 125 GVKEHCDAEVREIHATKQGFT-LALSNGKQIKGDRIIVTTGGKASPQLGSNGSGYDLVKP 183

Query: 171 AGRMGDSPSNSLFNSFMKFDF--DTGRLKTGTPARLDG--KTIIWDKTEKQFADERL--I 224
            G +   P  +L    +K  F      +K    A ++   K++  ++ E  F D  +   
Sbjct: 184 FGHLLIPPFPALVQLNLKAHFLKALKGVKFNGLAEVNSNNKSLRREEGEILFTDYGISGP 243

Query: 225 PFSFMTDK---ITNRQIECGI------TRTNLETHRIIMENIKHSAIYSGDIKSYG---- 271
           P   ++ K   +   + +  I        T  E    +M  + +      D    G    
Sbjct: 244 PILQLSRKAGEVLQNKEKPWIQLDLFPHLTTEELKEQLMIRLGYQPEKPLDFALIGLLNK 303

Query: 272 PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK 331
                 +++  ++  ++  H++  E                +  +  + +   T    ++
Sbjct: 304 RLIPVVLKETKIQPIQKLSHEVSDEEMNRL----------VSFLKGWRIEIEGT-QDWKQ 352

Query: 332 VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
             +      I+ + INPK    TLE+K + G++ AG+I
Sbjct: 353 AQVT--AGGIDVNGINPK----TLESKLVPGMYFAGEI 384


>gi|312621880|ref|YP_004023493.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202347|gb|ADQ45674.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 462

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 138/481 (28%), Gaps = 110/481 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTS-------------TIGSMSC 46
           +N  YDVI++G G  G   A    K    A   +                     G   C
Sbjct: 1   MNTKYDVIIVGAGPCGIFTAYELVKTSYMAKVVIFEKGRDIESRECPKRVTNVCSGCKPC 60

Query: 47  N-------------------PAIGGL-----GKGHLVREIDALDGLMGRV---ADAAGIQ 79
           N                   P +GG      G+   +  I  +D +           G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFIGQNRTIELIKYVDSIYLENGADTKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDV-IQGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRLQDFLLSN--NIEIKFRTPVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E   ++ +V +D S+     VV+  G    G   + K+        ++    +     
Sbjct: 179 IVEDGKVAGVVAEDGSIYYAKNVVICVG--REGASWLSKIIEKYNIPCENNRVDIGVRVE 236

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQIECG 241
                    K  T    + K I + KT     D+++  F          +   N  +  G
Sbjct: 237 T---PNHIWKGITEHLYESKFIYYTKT----FDDKVRTFCMNPGGYVAVEHYDNLAVVNG 289

Query: 242 ITRTNLE---------THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +  N++           +   +  K S  Y   I              + R+G+     
Sbjct: 290 HSYKNIKSNNTNFALLVSKHFTDPFKDSIKYGKYIAELANMLSGGK-VLVQRYGD----- 343

Query: 293 IFLEPEGLNTDVVYPNG--------------ISTALPEEIQHQFIRTIPGLEK-----VN 333
            F+   G  ++                    +S  LP  I       I  L+       +
Sbjct: 344 -FIR--GRRSNEERIKRNSVVPTLTDAVAGDLSLVLPYRIMLDIKEMIEALDYVVQGVAS 400

Query: 334 IIRPGYAIE-YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSAR 391
                Y +E   Y N  ++    E   I  L+  G   G T G  +A+  G++     A 
Sbjct: 401 FDTLLYGVEVKFYSNEVKVKNNFECLTIQNLYFGGDGAGITRGLMQASVNGVLIAREIAS 460

Query: 392 K 392
           K
Sbjct: 461 K 461


>gi|312142418|ref|YP_003993864.1| FAD dependent oxidoreductase [Halanaerobium sp. 'sapolanicus']
 gi|311903069|gb|ADQ13510.1| FAD dependent oxidoreductase [Halanaerobium sp. 'sapolanicus']
          Length = 492

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M    YDVI++GGG +GC  A   A+      L+     
Sbjct: 1  MSQNKYDVIIVGGGISGCAVAWKLARYNIDVLLLEKDPD 39


>gi|293604260|ref|ZP_06686668.1| FAD dependent oxidoreductase [Achromobacter piechaudii ATCC
          43553]
 gi|292817485|gb|EFF76558.1| FAD dependent oxidoreductase [Achromobacter piechaudii ATCC
          43553]
          Length = 376

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA---IGGLGKGHLVR 60
          ++YDVIV+G G  G   A  AAK G S A+I       G+   N     + G   G ++ 
Sbjct: 2  KTYDVIVVGAGMLGIAHAWAAAKRGLSVAVIERSRQAHGATIRNFGQVIVTGQAPGMMLS 61

Query: 61 EIDALDGLMGRVADAAGIQFR 81
                 L   +A  AG   R
Sbjct: 62 HAQQARELWLELAAKAGFHVR 82


>gi|297182833|gb|ADI18985.1| dehydrogenases (flavoproteins) [uncultured delta proteobacterium
           HF0010_10I05]
          Length = 413

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +++VIGGG AG  AA + A+ G +T +I             P I   G+G +   +D+L 
Sbjct: 12  EIVVIGGGPAGLSAALICARRGLNTTVI--------EKRSFPVIKTCGEGLMPGGVDSLK 63

Query: 67  GLM-------GRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            L+             AGI++   N     G   +G     +R      +++ +  +  +
Sbjct: 64  RLVPQKLINKIEYHPFAGIRYIAPNGECASGYFGKGDGWGIERSELSKLLRQAVEQEPGI 123

Query: 118 DVIQGEVA 125
           D+++  VA
Sbjct: 124 DILENTVA 131


>gi|262274716|ref|ZP_06052527.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Grimontia hollisae CIP 101886]
 gi|262221279|gb|EEY72593.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Grimontia hollisae CIP 101886]
          Length = 386

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNP---AIGGLGKGHLV 59
           + +D+IV+GGG  G   A   A+ G   A++  +      S        +        L+
Sbjct: 2   KQFDIIVVGGGMVGAAVALGLARQGKRIAMVERRAPEAFSSDQPMDLRVSAISPASVSLL 61

Query: 60  REIDALDGLMGRVADAAGIQFRVL-------NVKKGPAVRGPRTQ----ADRELYRLAMQ 108
           + +   + ++          +R L          +  A      Q     +  + +LA+ 
Sbjct: 62  QSLKVWNDVLA----MRVCPYRRLETWEHPECRIRFSADSMDLQQLGFIVENRILQLALW 117

Query: 109 REILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               +QENLD+   G +     E +   S+ + D S++    +V   G   R
Sbjct: 118 HACEAQENLDIFCPGNIVAMRPENHG-HSVELDDGSILYGHWLVGADGANSR 168


>gi|254450647|ref|ZP_05064084.1| mercuric reductase [Octadecabacter antarcticus 238]
 gi|198265053|gb|EDY89323.1| mercuric reductase [Octadecabacter antarcticus 238]
          Length = 493

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLV 59
           ++D+ VIG G AG  AA  AA+ G   ALI + T       +G +     I  +   H  
Sbjct: 30  TFDLAVIGAGSAGFSAAITAAEAGVRVALIGYGTIGGTCVNVGCIPSKAMIRAVETLHSA 89

Query: 60  REIDALDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +  D  DG+  M +V D A +            V   +   D +L        + + E +
Sbjct: 90  KVADRFDGVEAMAKVTDWAAM------------VAQKQALVD-DLRAAKYVDVLPNYEGV 136

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             I+G+          +       N  IR   V++ TG+
Sbjct: 137 TYIEGQANFTEDGSLEVG------NRTIRAPKVIIATGS 169


>gi|258646684|ref|ZP_05734153.1| FAD dependent oxidoreductase [Dialister invisus DSM 15470]
 gi|260404111|gb|EEW97658.1| FAD dependent oxidoreductase [Dialister invisus DSM 15470]
          Length = 466

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 142/480 (29%), Gaps = 105/480 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHL 58
           ++R YDV+VIG G AG   A   A  GAS  ++         I       A     + ++
Sbjct: 1   MSRFYDVVVIGAGPAGIFTALELADTGASVLILEKGLDIRERIALNRDKNAPPKDRRANI 60

Query: 59  VREIDALD----GLMGRVADAAGIQFRVLNVKKGP-------AVRGPRTQADRELYRLAM 107
           V           G +    D  G     +N  +         +V      A+R++Y    
Sbjct: 61  VCGWGGAGAFSDGKLTLTTDYGGNLDDYMNKGELAGLISYVDSVYCRYGGAERKVYGDEF 120

Query: 108 QREILSQ------------------------------------ENLDVIQGEVAG--FNT 129
             EI                                       +N+ VI    A      
Sbjct: 121 AEEIHELKRKSAAADLMFIPARIRHLGTDVNSVILANMRDSLPDNVTVISKTAADRILAD 180

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           +   +  +         C  +V   G    G     K     G    S +  +       
Sbjct: 181 KDGTVLGVE-AGGETYHCKYLVAAPG--REGAEWFMKEARALGLETQSNAVDIGVRVES- 236

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI------- 242
                  +  T    + K + + ++     D+R+  F          +   G+       
Sbjct: 237 --PAEVYEPITKICYESKLVYFSRS----FDDRVRTFCMNPYGFVVTENNAGLQTVNGHS 290

Query: 243 --TRTNLETHRIIMENIKHSAIYSGDI------------KSYGP--RYCPSIEDKIVRFG 286
              + +  T+  I+ + + ++ ++  I               GP  +    + D      
Sbjct: 291 FAHKKSGNTNFAILVSKQFTSPFNEPISYGKYIASLANMLGAGPIVQRLGDLRDGRRSTV 350

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG-------- 338
           ER    + + P   +     P  +S  LP       +     L++V    PG        
Sbjct: 351 ERIRRGL-VRPTMPSAT---PGDLSLVLPYRFLKDIMEMFEALDQVA---PGANSRHTLL 403

Query: 339 YAIEYDYINPK-ELFPTLETKKISGLFLA-GQING-TTGYEEAAAQGLVAGINSARKSNK 395
           Y +E  + + +  L   LETK  +  F A G   G T G  +A+A G+V G     +  K
Sbjct: 404 YGVEVKFYSSRIALTNQLETKFRN--FFAIGDGAGITRGLVQASAAGVVVGREICAREGK 461


>gi|197301496|ref|ZP_03166575.1| hypothetical protein RUMLAC_00228 [Ruminococcus lactaris ATCC
           29176]
 gi|197299456|gb|EDY33977.1| hypothetical protein RUMLAC_00228 [Ruminococcus lactaris ATCC
           29176]
          Length = 666

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 17/145 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+  +V+VIGGG AG EAA  AA++G +T L+             P +GG     L  E
Sbjct: 380 VNKPCNVVVIGGGTAGMEAACTAAEVGCTTFLLE----------KKPYLGG-----LAAE 424

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--RELYRLAMQREILSQENLDV 119
           I  +            +  R  N+K   A        D  + L    +     S   L  
Sbjct: 425 ISKIPDKKRLADFPNYMIHRTNNLKNLFAFTNTDANVDFIKNLKPNIIVNATGSSPLLPP 484

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSM 144
           I G     + E   ++SI+   N +
Sbjct: 485 IPGLHENIDKEGGKVASILTMINHV 509


>gi|153816322|ref|ZP_01968990.1| hypothetical protein RUMTOR_02573 [Ruminococcus torques ATCC 27756]
 gi|317500795|ref|ZP_07959009.1| thioredoxin-disulfide reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089727|ref|ZP_08338624.1| hypothetical protein HMPREF1025_02207 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846375|gb|EDK23293.1| hypothetical protein RUMTOR_02573 [Ruminococcus torques ATCC 27756]
 gi|316897804|gb|EFV19861.1| thioredoxin-disulfide reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330404308|gb|EGG83854.1| hypothetical protein HMPREF1025_02207 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 299

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 42/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV++IG G AG  A   AA  G    +                           E + +
Sbjct: 3   YDVVIIGAGPAGISAGIYAASRGKKVLIT--------------------------EKNTV 36

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL+G+V+        +         +  + QA              +   +D+I  EV 
Sbjct: 37  GGLIGKVSTVTHYAGIMTEETGSSFAKRLKIQA-------------ENT-GIDIIYEEVT 82

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               + + I  +  +D +      +VL  GT  R
Sbjct: 83  QVELQGS-IKKVFTKDGA-YDAKKIVLANGTTPR 114


>gi|226308081|ref|YP_002768041.1| dihydrolipoamide dehydrogenase [Rhodococcus erythropolis PR4]
 gi|226187198|dbj|BAH35302.1| dihydrolipoamide dehydrogenase [Rhodococcus erythropolis PR4]
          Length = 465

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGH 57
           ++ YDV+VIGGG  G  AA  AA+LG + AL+            G +     + G    H
Sbjct: 7   SKKYDVLVIGGGPGGYVAAIRAAQLGLNVALVERDRLGGICLNWGCIPTKAMLHGADVAH 66

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            + E+D         A       ++++  +G + +     A            ++ +  +
Sbjct: 67  TLSELDKYG---FSSASVQFDISKLVSFSRGVSEKLSGGVA-----------YLMKKNGV 112

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           DVI G        K +   +V  +    R   V++ TG   R +
Sbjct: 113 DVISGTA------KLVDKGVVSVEGQTYRADHVIIATGARPRSI 150


>gi|115535191|ref|NP_741814.2| hypothetical protein C15B12.8 [Caenorhabditis elegans]
 gi|82654596|gb|AAL32212.2|U23529_11 Hypothetical protein C15B12.8 [Caenorhabditis elegans]
          Length = 385

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+ ++YDVIV+G G  G   A    +LG  T L             N +    GK  ++R
Sbjct: 1  MVGKAYDVIVVGAGIFGSCTAYHCQRLGLRTLL----LEQYSLGHSNGS--SHGKSRIIR 54

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
                  +  V D + +Q   L  K+G  + 
Sbjct: 55 YAHTDPEYVPLVGD-SYLQIEELEKKRGEKLW 85


>gi|7496036|pir||T15503 hypothetical protein C15B12.1 - Caenorhabditis elegans
          Length = 703

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+ ++YDVIV+G G  G   A    +LG  T L             N +    GK  ++R
Sbjct: 1  MVGKAYDVIVVGAGIFGSCTAYHCQRLGLRTLL----LEQYSLGHSNGS--SHGKSRIIR 54

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
                  +  V D + +Q   L  K+G  + 
Sbjct: 55 YAHTDPEYVPLVGD-SYLQIEELEKKRGEKLW 85


>gi|119871902|ref|YP_929909.1| geranylgeranyl reductase [Pyrobaculum islandicum DSM 4184]
 gi|119673310|gb|ABL87566.1| geranylgeranyl reductase [Pyrobaculum islandicum DSM 4184]
          Length = 362

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI++G G AG  AA +A +LG  T +I
Sbjct: 3  YDVIIVGAGPAGSTAALMARRLGLKTLVI 31


>gi|146307524|ref|YP_001187989.1| dihydrolipoamide dehydrogenase [Pseudomonas mendocina ymp]
 gi|145575725|gb|ABP85257.1| dihydrolipoamide dehydrogenase [Pseudomonas mendocina ymp]
          Length = 478

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 23/160 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------------IGSMSCNPA 49
           + + +DV+VIG G  G  AA  AA+LG  TA I                  +G +     
Sbjct: 1   MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQGKDGKIALGGTCLNVGCIPSKAL 60

Query: 50  IGGLGKGHLVREIDALDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           +    K H  +E  A+ G+   G   D   +  R  N+ K              L++   
Sbjct: 61  LDSSWKYHEAKEGFAVHGIEAKGVTIDVPAMIGRKANIVKNLTGGIGA------LFKANG 114

Query: 108 QREILSQENLDV-IQGEVAGFNTEKNIISS--IVMQDNSM 144
              +     L    Q EV G + +  ++    +++   S 
Sbjct: 115 VTLLEGHGKLLAGKQVEVTGIDGKTQVVEGAHVIIASGSK 154


>gi|261418312|ref|YP_003251994.1| succinate dehydrogenase flavoprotein subunit [Geobacillus sp.
           Y412MC61]
 gi|319767728|ref|YP_004133229.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. Y412MC52]
 gi|261374769|gb|ACX77512.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. Y412MC61]
 gi|317112594|gb|ADU95086.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. Y412MC52]
          Length = 585

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 107/616 (17%), Positives = 181/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +                 +G+ I    T     
Sbjct: 186 AFPADAVILATGGPGIIFGKS--TNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRIW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELDVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNKLD--CICFSRT----------------DSYIGVMIDDLTSK 418
            A   G+VAG N+ R    L+        T                 +  G     +  K
Sbjct: 394 SAIYGGMVAGPNAVRYIRGLEKSADAMPSTLYDSYVKREQEKWENILAMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      R   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDRLLKTDEKIQELMERYKNISVTDTSRWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYYRNESRGAHYKPEFPERNDEEWLK------TTMARYTPDGPSFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     Y+ ++  
Sbjct: 568 SLIKPRKRDYSKKKEE 583


>gi|66815949|ref|XP_641991.1| hypothetical protein DDB_G0278825 [Dictyostelium discoideum AX4]
 gi|60470033|gb|EAL68014.1| hypothetical protein DDB_G0278825 [Dictyostelium discoideum AX4]
          Length = 905

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 2/148 (1%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +      RL    ++   + + + +      ++      
Sbjct: 270 EKEKLEAERLEKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKEKLEA--E 327

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L+   L ++ L    +  ++  K R   E L       + L     +     +  +ERL
Sbjct: 328 RLEKERLEAERLEKEKLEAERLEKERLEAERLEKEKLEAERLEKERIENEILEAERLERL 387

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLI 564
           ++E        +Q ++ ++IK +E + +
Sbjct: 388 EMEKIEIERLEKQRLQEEQIKEKEMKRL 415



 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 24/179 (13%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +      RL    ++   + + R +      +       
Sbjct: 240 EKERLESERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKERLEA--E 297

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--VIE 534
            L+   L ++ L    +  ++  K +   E L       + L     +A +        E
Sbjct: 298 RLEKEKLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKEKLEAERLEKERLEAE 357

Query: 535 RLQIESSYAAYTGRQMI-----EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           RL+ E   A    ++ I     EA+ ++  E   I                 E+L   +
Sbjct: 358 RLEKEKLEAERLEKERIENEILEAERLERLEMEKI---------------EIERLEKQR 401



 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 21/176 (11%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
           +K  LE  R+   R E     +      RL    ++   + + R +      +       
Sbjct: 190 NKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERFEKERLES--E 247

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL--VIE 534
            L+   L ++ L    +  ++  K +   E L       + L     +A +        E
Sbjct: 248 RLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKERLEAERLEKEKLEAE 307

Query: 535 RLQIESSYAAYTGRQMIEAKEI--KFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           RL+ E   A    ++ +EA+ +  +  E   +                KEKL   +
Sbjct: 308 RLEKEKLEAERLEKEKLEAERLEKERLEAERL---------------EKEKLEAER 348



 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 17/143 (11%)

Query: 454 GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDF 513
             I +R+  +      +       L+   L ++ L    +  ++  K +   E L     
Sbjct: 175 RMIHQRKIYQRTIKENKERLEAERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERL 234

Query: 514 SIQNLFSICPDARKFSSL--VIERLQIESSYAAYTGRQMIEAKEI--KFEEKRLIPKDFD 569
             +       ++ +        ERL+ E   A    ++ +EA+ +  +  E   + K+  
Sbjct: 235 EAERFEKERLESERLEKERLEAERLEKEKLEAERLEKEKLEAERLEKERLEAERLEKE-- 292

Query: 570 YSSLPALSNEL----KEKLSILK 588
                    E     KEKL   +
Sbjct: 293 -------RLEAERLEKEKLEAER 308


>gi|302537705|ref|ZP_07290047.1| predicted protein [Streptomyces sp. C]
 gi|302446600|gb|EFL18416.1| predicted protein [Streptomyces sp. C]
          Length = 454

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 12/161 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREIDA 64
           YDV++ G   AG  AA + A+ G   AL+  ++      + C  ++       ++ E+  
Sbjct: 11  YDVVISGASLAGSTAAILLARRGVRVALLERRSDPEAYKVLCTHSMTANA-APVLDELGL 69

Query: 65  LDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----QENLD 118
           L  L   G V + A    R   +    A  GP       + R  +   I +       +D
Sbjct: 70  LPALEKAGAVRNEARWYTRWGWIHPRAAPAGPALPYGYNVRRSTLDPLIRARAGETPGVD 129

Query: 119 VIQGE-VAGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
           ++ G  V G  TE      +          IR   VV   G
Sbjct: 130 LLLGHQVTGLVTEAGRTVGVRARTPQGEREIRARLVVGADG 170


>gi|315645136|ref|ZP_07898262.1| HI0933 family protein [Paenibacillus vortex V453]
 gi|315279557|gb|EFU42862.1| HI0933 family protein [Paenibacillus vortex V453]
          Length = 425

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 136/438 (31%), Gaps = 83/438 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REI 62
            YD+IV+GGG +G  +   A + GAS  L          +     I G G+ ++   +E 
Sbjct: 3   DYDIIVVGGGPSGLMSCVAAGERGASVLL----IDKGDKLGRKLGISGGGRCNVTNAKEQ 58

Query: 63  DALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--- 116
           D L   +   GR   +A   +   ++       G R + +       +  +  S  N   
Sbjct: 59  DELIANIPGNGRFLYSAFQHWNNRDIMAFFEGLGIRLKEEDNGRMFPVTDKASSVVNALI 118

Query: 117 -------LDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
                   D+     V     E    + I ++   +I+ S V++ TG             
Sbjct: 119 GKVKELGTDIRTNSPVKSVLFENGQTAGIQLKSGEVIKSSCVIIATGGQSVPQTGSTGDG 178

Query: 169 IP----AGR------------------MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
            P    AG                   +       L    ++      + K     R D 
Sbjct: 179 YPWAEAAGHTITELYPTEVPIVSTETFIASKELQGLSLRDVELSVWNPKGKKVIAHRGDM 238

Query: 207 KTIIWDKTEK------QFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS 260
               +  +        QF  +    F  +   +          R+  E    + E  +  
Sbjct: 239 LFTHFGVSGPIALRCSQFIRQVQRKFEIVNVDMAIDMFP---DRSQAEIEAELKERFEAE 295

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGIS----TALPE 316
              S      G      I              + L    +++D++  +G+S    T+L  
Sbjct: 296 PKKSIKNVLKGMLPERMIP-------------LLLSKSSIDSDMI-CSGLSRTALTSLAT 341

Query: 317 EIQHQFIRT--IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTG 374
            ++    R      L++  +   G  +    I PK    ++E+K + GLF  G+I    G
Sbjct: 342 ILKKFAFRASGTRSLKEAFVT--GGGVSLKEIQPK----SMESKLMPGLFFCGEILDIHG 395

Query: 375 Y------EEAAAQGLVAG 386
           Y        A A G  AG
Sbjct: 396 YTGGYNITAAFATGYTAG 413


>gi|310641925|ref|YP_003946683.1| NADH:flavin oxidoreductase, putative [Paenibacillus polymyxa SC2]
 gi|309246875|gb|ADO56442.1| NADH:flavin oxidoreductase, putative [Paenibacillus polymyxa SC2]
          Length = 673

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+VIGGG AG EAA  AA++G    L   K  
Sbjct: 386 VVVIGGGTAGMEAACTAAEVGCKVTLFEEKPE 417


>gi|268323155|emb|CBH36743.1| conserved hypothetical protein, geranylgeranyl reductase family
           [uncultured archaeon]
          Length = 393

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 37/174 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK----- 55
           M    YDV+V+G G AG   A  AA+ G    LI         + C   +    +     
Sbjct: 1   MKEERYDVVVVGAGPAGSLTAKTAAEHGLDVLLIERNQEIGVPVKCAEGVSKDIEKFVVP 60

Query: 56  -----GHLVREIDALDG------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
                  +V+  +          + G   +  G         K  A    R  AD     
Sbjct: 61  DKKWVSAVVKGANIYGPDGTKVVMAGNKLEEVGYVLERRLFDKFLASEAARAGADIR--- 117

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM---IRCSTVVLTTG 155
                          ++ E  G   E   +  +          +    VV   G
Sbjct: 118 ---------------VKTEAYGIIKENGYVKGVYTHSMGKDTRVFAHVVVGADG 156


>gi|262379569|ref|ZP_06072725.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SH164]
 gi|262299026|gb|EEY86939.1| alkyl hydroperoxide reductase, F subunit [Acinetobacter
           radioresistens SH164]
          Length = 398

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 49/181 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  AA  AA+ G  T ++                            +  
Sbjct: 89  FDVLVIGGGPAGNTAAIYAARKGIRTGIVA---------------------------ERF 121

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +    D       + N       +GP+  A  E +    + +I    NL     +VA
Sbjct: 122 GGQVMDTMD-------IENFTSVTKTQGPKFAAAMEEHVREYEVDI---MNL----QKVA 167

Query: 126 GFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
                +   +    + + + + +   TV+L+TG   R     G        +      D 
Sbjct: 168 SIKGAEETANGLVEVTLDNGARLESKTVILSTGARWRQMNVPGEQEYATRGVAYCPHCDG 227

Query: 178 P 178
           P
Sbjct: 228 P 228


>gi|19881353|gb|AAM00918.1| FixC [Azospirillum brasilense]
          Length = 432

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 37/177 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           +   +D IVIG G +G  AA   AK G +                   +   +   I   
Sbjct: 1   MVEKFDAIVIGAGPSGNAAAYTLAKQGLNVLQLERGEYPGAKNVQGGIMYAAELEKIIPD 60

Query: 45  SCNPAIGGLGKGHLVREIDAL----DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
                       H++ E        D  +G        +    N  K       R   D+
Sbjct: 61  FREDCPTER---HII-EQRVWLLGDDNYIG-----TNYRSDAFNSDKPNRYTIIRANIDK 111

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                    +I     L + +  V     +    +  +   ++   I    V++  G
Sbjct: 112 -----WFSEKIREAGGLQICETTVTELIRDASGKVIGVRTDREGGEIHADVVIMADG 163


>gi|293115595|ref|ZP_05792231.2| pyridine nucleotide-disulfide oxidoreductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292809001|gb|EFF68206.1| pyridine nucleotide-disulfide oxidoreductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 408

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/425 (15%), Positives = 132/425 (31%), Gaps = 67/425 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ +IG G +G  AA  A + G    L  H     G       + G GK ++   ++  
Sbjct: 7   YDIGIIGAGASGMMAAVAAYREGLRICLFEHN-DKPG---KKILVTGNGKCNITN-LNMT 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAV------RGPRTQADRELY----RLAMQREILSQE 115
                  +D  G  F V+    GPA       +      D++ Y           + + +
Sbjct: 62  PECYNSNSD--GSYFSVI-KNFGPAELISFFKKIGLYTRDKDGYIYPFSEQAVSVLDALK 118

Query: 116 NLD--VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG------TFLRGVIHIGKL 167
           N    +      G N ++     ++  D        +++  G      T   G  +    
Sbjct: 119 NEISRLRIDLFTGINIKEIKKGFVIFSDKGEFNVRKLIIACGSKAMPVTGSDGSGYDFAK 178

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--DKTEKQ---FADER 222
           +     +   P+        KF  +   ++T     +  K +    D  E Q   +    
Sbjct: 179 QFSHHIVDVIPALVQIKCREKFFKELAGIRTKATVTVTDKAVKVVGDSGELQLTEYGISG 238

Query: 223 LIPFSFMTD-----------KITNRQIECGITRTNL-ETHRIIMENIKHSAIYSGDIKSY 270
           +  F                K+    +    T+T     H I   N K   + + +    
Sbjct: 239 IPVFQVSRHIKRLSDKGNDVKVHINFMPGYSTKTVKGMVHNIFSHNRKLDPVTALNGLLN 298

Query: 271 GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
                  +++  +     +  +   E     T+ +  N I   +             G +
Sbjct: 299 KKLALVLVKNTTI-----DRGKSCGEITETQTEELVRNIIDFTVTPYDT-------NGFD 346

Query: 331 KVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGLV 384
              +   G       ++   L  T+E++ +  L+ AG+I    G         A + G +
Sbjct: 347 NAQVCAGGVN-----LDEINLN-TMESRLVKNLYFAGEILDVDGKCGGYNLQWAFSSGYL 400

Query: 385 AGINS 389
           AGI++
Sbjct: 401 AGISA 405


>gi|227822002|ref|YP_002825973.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Sinorhizobium fredii
          NGR234]
 gi|227341002|gb|ACP25220.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Sinorhizobium fredii
          NGR234]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + YD+ +IG G AG  AA   A+ G   AL+  K 
Sbjct: 2  QHYDIAIIGAGLAGSLAAMALARDGHRVALVGPKP 36


>gi|146317841|ref|YP_001197552.1| flavoprotein [Streptococcus suis 05ZYH33]
 gi|145688647|gb|ABP89153.1| Predicted flavoprotein [Streptococcus suis 05ZYH33]
          Length = 391

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 129/410 (31%), Gaps = 56/410 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D I+IG G AG  AA  ++  G  T L+         +    +  G G+ ++       D
Sbjct: 5   DTIIIGAGPAGMMAAISSSFYGKKTLLLEKNK----RLGKKLSGTGGGRCNVTNNGTLED 60

Query: 67  GLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQREI 111
            L      GR   +   QF   ++       G + +           DR    +      
Sbjct: 61  LLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGRVFPTTDRSQTIIKCLEMK 120

Query: 112 LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + +  +D+  G EV       ++   +   +  +     +++TTG               
Sbjct: 121 MLENGVDIRTGTEVVSVRKMDDLFH-VKTSE-EVFTAPQLIVTTGG------KTYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  ++  
Sbjct: 173 TGFGHDIA--------RHFKLEVTEIEAAESPVL----TDFPHKKLQGISLDDVTLTYGK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             IT+  +      +     R+    +K       D+          + + + +  E++ 
Sbjct: 221 HVITHDLLFTHFGLSGPAALRL-SSFVKGGETAFLDVLPT--HSDQDLFEHLEKNREKSV 277

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYD 344
                E         +     + + +  Q      +  L+ + I   G        +   
Sbjct: 278 KNTLSELMPDRLADFFAENYDSKVKQVSQKDLTELVTLLKVLPIKITGKMSLAKSFVTKG 337

Query: 345 YINPKELFP-TLETKKISGLFLAGQ---INGTTGYEEAA---AQGLVAGI 387
            ++ KE+ P TLE+KK+ GL  AG+   IN  TG        A G VAGI
Sbjct: 338 GVDLKEINPKTLESKKVPGLHFAGEVLDINAHTGGFNITYCLATGWVAGI 387


>gi|56412349|ref|YP_149424.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361286|ref|YP_002140921.1| oxidoreductase FixC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126606|gb|AAV76112.1| FixC protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197092761|emb|CAR58185.1| FixC protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 428

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G AG   A V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIFDAIIVGAGLAGSVTALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   A +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|227894635|ref|ZP_04012440.1| thioredoxin reductase [Lactobacillus ultunensis DSM 16047]
 gi|227863530|gb|EEJ70951.1| thioredoxin reductase [Lactobacillus ultunensis DSM 16047]
          Length = 308

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 42/170 (24%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG G  G  AA  AA+   S A++                          +  
Sbjct: 2   KKYDVVVIGAGPGGMTAALYAARANLSVAMV--------------------------DRG 35

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M   A+       V N    P++ GP  +    +Y+ A+++ +        + G+
Sbjct: 36  VYGGQMNNTAE-------VENYPGFPSIMGP--ELGENMYQGAIKQGVE------FVYGD 80

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           V G   + +     +  +++ +    V++ TG+  R  + +   K  +GR
Sbjct: 81  VQGIKVDGSKRIVQMDNEDNNLEAKAVIIGTGSDNR-KLGVPGEKEYSGR 129


>gi|313901267|ref|ZP_07834754.1| thioredoxin-disulfide reductase [Clostridium sp. HGF2]
 gi|312953875|gb|EFR35556.1| thioredoxin-disulfide reductase [Clostridium sp. HGF2]
          Length = 306

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 87/284 (30%), Gaps = 62/284 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R YD+I+IG G AG  AA   ++ G  TA++                          E
Sbjct: 1   MERRYDLIIIGAGPAGMSAAIYGSRAGLKTAML--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           + A  G + + A+ +       N        G +  +D   +  +   E L         
Sbjct: 35  MGAPGGKLIKTAEIS-------NWPGIIETNGAKLASDMFEHSTSFGAEYLY-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT-------------FLRGVIHIGKLK 168
           G V     E      I+ +D +      V++ TGT               RGV +     
Sbjct: 80  GNV--IRVEDGAYKKIICEDGTEYEAKAVIVATGTQERMMNVPGELENVGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
               R  +       NS ++      +  +     +       D    Q A +     + 
Sbjct: 138 GAFFRDQEVVVIGGGNSALEEANYLTQFASKVNIIIRRDVFRADSI-VQNAIKDNPKITV 196

Query: 229 MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP 272
           +T  +  R ++ G+  T      +++ N+  +           P
Sbjct: 197 VTKHVPVRVVDDGMRVTG-----LVIRNVDTNVETEMKTHGIFP 235


>gi|319940959|ref|ZP_08015296.1| hypothetical protein HMPREF9464_00515 [Sutterella wadsworthensis
          3_1_45B]
 gi|319805532|gb|EFW02327.1| hypothetical protein HMPREF9464_00515 [Sutterella wadsworthensis
          3_1_45B]
          Length = 495

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ ++DV+V+G G AG  AA  AA+ GA T L+
Sbjct: 35 LSENWDVVVVGAGFAGMCAALEAAERGAKTVLL 67


>gi|298386086|ref|ZP_06995643.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 1_1_14]
 gi|298261314|gb|EFI04181.1| alkyl hydroperoxide reductase, F subunit [Bacteroides sp. 1_1_14]
          Length = 517

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 47/271 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 210 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D    R   + E+  ++ L      
Sbjct: 263 TTGS---ELADNLKTHL-------------LRYPVDLLEQRKIEKVELAGKDKL------ 300

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +            +++ TG   R  +++       GR      +   
Sbjct: 301 -------------VTTSVGEKFIAPALIIATGASWR-KLNVPGENDYIGRGVAFCPHCDG 346

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  K     G   +G  A +D   I   K       + L   + + +++  + +    
Sbjct: 347 PFYKGKQVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADNVLQERL--KSLPNVE 403

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              + +T  +I    K +A+   D K+   R
Sbjct: 404 VFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|262167254|ref|ZP_06034965.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae RC27]
 gi|262024318|gb|EEY43008.1| NAD(FAD)-utilizing dehydrogenase [Vibrio cholerae RC27]
          Length = 395

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 121/403 (30%), Gaps = 57/403 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++++ DV++IG G AG   AA AA+ G    L                I G G+ +    
Sbjct: 1   MSKTVDVVIIGAGAAGLMCAAQAARHGRQVLL----LDHAKKPGRKILISGGGRCNFTNY 56

Query: 61  EIDALDGLMGR-------VADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQR 109
           ++ A + L          ++      F  L  K G A      G     D     + M  
Sbjct: 57  DVSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLL 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
               Q N++  Q      +   +      +Q     I C+++V+ TG      +      
Sbjct: 117 SECDQPNIE--QRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFG 174

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                    P  S     + F       +   P  L G  I   +   +          F
Sbjct: 175 YKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAP--LSGVAIPV-EMRAECGKTFKEALLF 231

Query: 229 MTDKITNR---QIECGITR----TNLETHRIIMENIKHSAIYSGDIKS-------YGPRY 274
               ++     QI    T     T      + +  +  S   +   +S         P+ 
Sbjct: 232 THRGLSGPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKR 291

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI-RTIPGLEKVN 333
              +  +   F ++   Q    P+         + + T L    Q   +     G     
Sbjct: 292 LVEVLIERQLFADKPLKQ--YSPKE-------LDAVQTRL---EQWSIVPNGTEGYRTAE 339

Query: 334 IIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
           +   G       ++   L   T+E K + GLF  G++   TG+
Sbjct: 340 VTLGG-------VDTDCLSSKTMECKTVKGLFFIGEVMDVTGW 375


>gi|78044723|ref|YP_358935.1| fumarate reductase, flavoprotein subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996838|gb|ABB15737.1| fumarate reductase, flavoprotein subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 569

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 72/197 (36%), Gaps = 44/197 (22%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTIGSMSC-----NPAIGGLGKGHL 58
            YDV+VIG G AG +AA VAAK G  + AL+T    T  +  C     N A+  + K   
Sbjct: 3   KYDVLVIGSGGAGMQAALVAAKSGELNVALMTKVFPTRSATCCAQGGTNAALRNVDKSDS 62

Query: 59  VREIDALDGLMGR--VADAAGIQFRV---------LNVKKGPAVRGPRTQA--------- 98
           + E  A D + G   +AD   ++F V         L+    P  R               
Sbjct: 63  I-EKHAFDTIKGSDFLADQDAVEFFVSLLPETILELDYFGVPFSRLEDGTIAQRPFGGQS 121

Query: 99  -DRELY----------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV-----MQDN 142
             R  Y              ++ + +Q N+ + +  +     E   I  +V       D 
Sbjct: 122 HPRTCYSADKIGAVVLHTLYEQCLKNQVNI-LTEWFLLDLVVENEQIIGVVAMNMKTGDI 180

Query: 143 SMIRCSTVVLTTGTFLR 159
             I    VVL TG   R
Sbjct: 181 HPILAKAVVLATGGAGR 197


>gi|29348220|ref|NP_811723.1| alkyl hydroperoxide reductase subunit F [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340123|gb|AAO77917.1| alkyl hydroperoxide reductase subunit F [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 523

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 47/271 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  AA  +A+ G   A++      +G          +G  +L+   +
Sbjct: 216 KEYDVIVAGGGPAGVSAAIYSARKGLRVAIVA---ERVGGQVKET----VGIENLISVPE 268

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                   +AD                    R   D    R   + E+  ++ L      
Sbjct: 269 TTGS---ELADNLKTHL-------------LRYPVDLLEQRKIEKVELAGKDKL------ 306

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                        +            +++ TG   R  +++       GR      +   
Sbjct: 307 -------------VTTSVGEKFIAPALIIATGASWR-KLNVPGENDYIGRGVAFCPHCDG 352

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  K     G   +G  A +D   I   K       + L   + + +++  + +    
Sbjct: 353 PFYKGKQVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADNVLQERL--KSLPNVE 409

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              + +T  +I    K +A+   D K+   R
Sbjct: 410 VFVSSQTTEVIGNGDKLTALRIKDRKTEEER 440


>gi|302868201|ref|YP_003836838.1| NADH:flavin oxidoreductase/NADH oxidase [Micromonospora aurantiaca
           ATCC 27029]
 gi|302571060|gb|ADL47262.1| NADH:flavin oxidoreductase/NADH oxidase [Micromonospora aurantiaca
           ATCC 27029]
          Length = 675

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 33/207 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVREID- 63
           DV+V+GGG AG EAA  A + G    ++  +   +G      A   G    G L R++  
Sbjct: 393 DVLVVGGGPAGLEAALSAHRAGHRVTVVEAR-DRLGGQVEVAARVPGRERLGLLTRDLAR 451

Query: 64  --ALDGLMGRVADAAGI--------QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             A  G+  R+   AG+        Q  VL     PA R                     
Sbjct: 452 DVAAAGIPVRLGHRAGVEDVLSGGYQDVVLATGSRPARRDLPGGP--------------- 496

Query: 114 QENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              +D+ Q  V              +V+ D      ++V          V  +      +
Sbjct: 497 -PVVDIWQA-VDHLADPGYRPDGAVVVLDDEGTWSAASVAEAFARRGARVHLVSPTATVS 554

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            ++      +L   F         ++T
Sbjct: 555 AKITTYSRLALLKRFADLGIAVHPMRT 581


>gi|25011835|ref|NP_736230.1| hypothetical protein gbs1796 [Streptococcus agalactiae NEM316]
 gi|24413376|emb|CAD47455.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 390

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 134/415 (32%), Gaps = 62/415 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  +   G  T LI         +    A  G G+ ++    +
Sbjct: 2   KHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G   + +   R        R I++  
Sbjct: 58  LDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINA- 116

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI-----P 170
            L+    E+ G       + S+  +        T    T      +I     K       
Sbjct: 117 -LENKIKELGGQIMTDTEVVSVK-KIGDSFYIKT--KDTQFASDKLIVTTGGKSYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  SF  
Sbjct: 173 TGFGHDIA--------RHFKLEVTDMEAAESPLL----TDFPHKKLQGISLDDVTLSFEK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--- 287
             IT+  +      +     RI       S +  G+          S+++    F     
Sbjct: 221 HIITHDLLFTHFGLSGPAALRI------SSFVKGGETIYLDVLPNISVKELETHFQNERE 274

Query: 288 ---RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
              +N  +I L PE       Y   +   + +         I  L+K+ I+  G      
Sbjct: 275 KSLKNALKILL-PE--RLAEFYAEDLPEKVKQVSVKDLETLIQKLKKLPILVTGKMSLAK 331

Query: 341 --IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
             +    ++ KE+ P TLE+KK++GL  AG+   IN  TG      A   G VAG
Sbjct: 332 SFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|315505403|ref|YP_004084290.1| NADH:flavin oxidoreductase/NADH oxidase [Micromonospora sp. L5]
 gi|315412022|gb|ADU10139.1| NADH:flavin oxidoreductase/NADH oxidase [Micromonospora sp. L5]
          Length = 675

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 33/207 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVREID- 63
           DV+V+GGG AG EAA  A + G    ++  +   +G      A   G    G L R++  
Sbjct: 393 DVLVVGGGPAGLEAALSAHRAGHRVTVVEAR-DRLGGQVEVAARVPGRERLGLLTRDLAR 451

Query: 64  --ALDGLMGRVADAAGI--------QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             A  G+  R+   AG+        Q  VL     PA R                     
Sbjct: 452 DVAAAGIPVRLGHRAGVEDVLSGGYQDVVLATGSRPARRDLPGGP--------------- 496

Query: 114 QENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              +D+ Q  V              +V+ D      ++V          V  +      +
Sbjct: 497 -PVVDIWQA-VDHLADPGYRPDGAVVVLDDEGTWSAASVAEAFARRGARVHLVSPTATVS 554

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKT 198
            ++      +L   F         ++T
Sbjct: 555 AKITTYSRLALLKRFADLGIAVHPMRT 581


>gi|254480482|ref|ZP_05093729.1| dihydrolipoyl dehydrogenase [marine gamma proteobacterium
          HTCC2148]
 gi|214039065|gb|EEB79725.1| dihydrolipoyl dehydrogenase [marine gamma proteobacterium
          HTCC2148]
          Length = 481

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          ++  +DV+VIG G AG  AA  AA+LG STA +       G + 
Sbjct: 3  MSDKFDVVVIGAGPAGYVAAIKAAQLGLSTACVEQWLDDKGKVR 46


>gi|52548545|gb|AAU82394.1| geranylgeranyl reductase [uncultured archaeon GZfos17C7]
          Length = 396

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          M    YDV+V+G G AG   A  AA+ G    LI         + C
Sbjct: 1  MNEEKYDVVVVGAGPAGSITAKTAAERGLDVLLIERNPEIGVPVKC 46


>gi|325830078|ref|ZP_08163535.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|325487545|gb|EGC89983.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 614

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            R +DV+V+G GHAG   A  AA+LG    L+
Sbjct: 102 TRDFDVVVLGAGHAGVACAHKAAELGKKVVLV 133


>gi|257790290|ref|YP_003180896.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257474187|gb|ACV54507.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
          Length = 613

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            R +DV+V+G GHAG   A  AA+LG    L+
Sbjct: 101 TRDFDVVVLGAGHAGVACAHKAAELGKKVVLV 132


>gi|329115252|ref|ZP_08244007.1| Hypothetical protein APO_2068 [Acetobacter pomorum DM001]
 gi|326695695|gb|EGE47381.1| Hypothetical protein APO_2068 [Acetobacter pomorum DM001]
          Length = 552

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 49/173 (28%), Gaps = 23/173 (13%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IVIG G  G  AA V A++G    L+      +             +  L  E +   G 
Sbjct: 109 IVIGAGPCGFMAALVLARMGLRPLLLE--RGKVVRERTVDTFALWRRSELTPESNVQFGE 166

Query: 69  MG-----------RVADAAGIQFRVLN--VKKGPAVRGPRTQADRELY------RLAMQR 109
            G           +V D   +  +VL   VK G                        ++R
Sbjct: 167 GGAGTFSDGKLYSQVKDPRFLGRKVLEEFVKAGAPEDILYLAHPHIGTFRLVSMVEHIRR 226

Query: 110 EILSQENLDVIQGEVAGFNTEKNI--ISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           E+         Q  V G         +  +   +   I    V+L  G   R 
Sbjct: 227 EVEEAGGEYRFQTRVDGLVLNPQTRAVEGVRTAEGETIHADHVILAVGHSARD 279


>gi|308069007|ref|YP_003870612.1| NADH oxidase [Paenibacillus polymyxa E681]
 gi|305858286|gb|ADM70074.1| NADH oxidase [Paenibacillus polymyxa E681]
          Length = 673

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+VIGGG AG EAA  AA++G    L   K  
Sbjct: 386 VVVIGGGTAGMEAACTAAEVGCKVTLFEEKPE 417


>gi|298529711|ref|ZP_07017114.1| HI0933 family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511147|gb|EFI35050.1| HI0933 family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 424

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +VIV+GGG AG  AA  AA  G    L           +    I G G+ +L  
Sbjct: 9  EVIVVGGGPAGLMAAGQAASRGLRVVL----LEKKHLPARKLGITGQGRCNLTN 58


>gi|330506491|ref|YP_004382919.1| hypothetical protein MCON_0202 [Methanosaeta concilii GP-6]
 gi|328927299|gb|AEB67101.1| conserved hypothetical protein TIGR00275 [Methanosaeta concilii
           GP-6]
          Length = 451

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 125/422 (29%), Gaps = 79/422 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAA--------KLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           R YD+IVIG G AG   A            +      LI       GS      + G G+
Sbjct: 28  RRYDLIVIGAGPAGLFCAINCRQNARNDDHRRDNRRILI---LEKKGSPGRKLLLSGSGQ 84

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            ++  E     G +    +  G   R L     PA+ G   Q D   Y  A   E+ S+ 
Sbjct: 85  CNITHE-----GEIRNFLNHYGEHGRFLR----PAIMGFTNQ-DLIYYFKAKGLEMASEP 134

Query: 116 NLDVIQGE-----VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK--LK 168
           +  +         V     E    + I +Q    +R    +      L          L 
Sbjct: 135 SGKIFPQTRRSKDVLDILIEDCKKADIEIQCRKDVRTVNRIEDGFALLGDGFSYRSSILV 194

Query: 169 IPAGRMGDSPSNSLFNSF---MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
           I  G      + S  + +            +       +       D     F     I 
Sbjct: 195 IATGGCSYPATGSSGDGYRFARSLGHRVTEIGPALTPVIIKDYPFHDLAGISF---ENIK 251

Query: 226 FSFMTDKITNRQI-ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
            S    K T     +  +T   L    I+  +       +  +         ++E  I+ 
Sbjct: 252 ISLNNLKKTREGQGDILLTHEGLSGPAILDLSRYIQPEDTLKLSFVPKEKRAALEGWILE 311

Query: 285 FGERNGHQI---------------------FLEPEGLNTDV----------VYPNGISTA 313
              + G +                       +E  G++ D+          ++   I   
Sbjct: 312 LSGKEGSRTVKSLLSSIPCSVPLPYRLIGRIIEICGIDPDLGLSQLRRRERMHLVDILVG 371

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGT 372
           LP  +         G E   + R G       ++ +E+ P T++++ + GL+LAG++   
Sbjct: 372 LPLTVSRP-----DGFEAAMVTRGG-------VDWREVNPKTMQSRLVKGLYLAGEVLDV 419

Query: 373 TG 374
            G
Sbjct: 420 DG 421


>gi|20804173|emb|CAD31376.1| PROBABLE ELECTRON TRANSFER FLAVOPROTEIN-QUINONE OXIDOREDUCTASE FIXC
           [Mesorhizobium loti R7A]
          Length = 435

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 19/169 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSM--SCNP 48
           MI + +D IV+G G +G  AA   A  G +   +                   M     P
Sbjct: 1   MIEQEFDAIVVGAGMSGNAAAYTMASQGLTVLQLERGEYPGSKNVQGAIMYADMLEQIIP 60

Query: 49  AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                    L R +      +       G+Q+R  +  +    +  R    R  +     
Sbjct: 61  DFRDDA--PLERHLVEQRFWVMDDTSHTGMQYRSDDFNE---AKPNRYTIIRAQFDKWFS 115

Query: 109 REILSQENLDVIQGEVAGFNTE-KNIISSIVMQD-NSMIRCSTVVLTTG 155
           R++       + +  V          +  +        I    VVL  G
Sbjct: 116 RKVRQAGATVLCETTVTELVRSASGKVIGVRTDRAGGPIYADVVVLAEG 164


>gi|56697085|ref|YP_167448.1| dihydrolipoamide dehydrogenase [Ruegeria pomeroyi DSS-3]
 gi|56678822|gb|AAV95488.1| pyruvate dehydrogenase complex, E3 component, lipoamide
           dehydrogenase, putative [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +SYDVIVIG G  G  AA  AA+LG    ++       I    G +     +     
Sbjct: 1   MAAQSYDVIVIGAGPGGYVAAIRAAQLGLKACVVEREHLGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             AD  G     V+   +G A +                  ++ +
Sbjct: 61  FHLMERAKEFG----LKADNIGYDLDAVVKRSRGVAKQLSGG-----------IGHLMKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
             +DV+ GE       K  +S +     +  +    ++L TG   R +
Sbjct: 106 NKIDVVMGEAT--IPAKGKVS-VKTDKGTQELTAKNIILATGARAREL 150


>gi|332304741|ref|YP_004432592.1| FAD dependent oxidoreductase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172070|gb|AEE21324.1| FAD dependent oxidoreductase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 523

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N SYDVIV+GGGH G  +A   A+ G    ++      IG MS +  +      H++  
Sbjct: 1  MNNSYDVIVVGGGHNGLVSACYLAEEGKKVLVLEA-ADKIGGMSASGYLIPEAPEHMIHS 59


>gi|268323320|emb|CBH36908.1| conserved hypothetical protein, geranylgeranyl reductase family
           [uncultured archaeon]
          Length = 412

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 38/304 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +++DVI+ GGG AG  AA +AA+    T L+    +    +  +    G      +++
Sbjct: 1   MKKNFDVIIAGGGPAGLSAAIIAARNKCDTLLVESSKAFGYPIHDS----GATFSEAIKD 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +   G++    D   I      V       G     +R      + + I + E +++  
Sbjct: 57  FNLSKGVITNRIDGVTIVSPKGYVVSTKLGEGIGYILERRELNRELAK-IAANEGVEIKM 115

Query: 122 G-EVAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGVIH--------IGKL 167
             +          ++ +  +     DN   +   V+  TG  +  VI         +  +
Sbjct: 116 PVKAVSPILSNGFVAGLQTKELIGGDNIEYKSKLVIDATG--VNAVIAKAVGIHPGMSNI 173

Query: 168 KIPAGRMGDSPSNSLFN-SFMKFDFDTGRLKTGTP---ARLDGKTIIWDKTEKQFADERL 223
           +   G   +  +  L N +F++  F +    +G      + DG            ++ER+
Sbjct: 174 RWAIGAEYEMTNVELDNPNFIELYFGSQIAPSGYGWIFPKGDG-VANVGVGITHISNERI 232

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
            PF +++  I    +          T + +             I   GP +   + D ++
Sbjct: 233 NPFKYLSRFIKEYPV----------TSKKLKNAQPLEYHVG--ILPIGPMFDQIVSDGLM 280

Query: 284 RFGE 287
             G+
Sbjct: 281 IVGD 284


>gi|19115231|ref|NP_594319.1| succinate dehydrogenase Sdh1 [Schizosaccharomyces pombe 972h-]
 gi|31076658|sp|Q9UTJ7|DHSA_SCHPO RecName: Full=Probable succinate dehydrogenase [ubiquinone]
           flavoprotein subunit, mitochondrial; AltName:
           Full=Flavoprotein subunit of complex II; Short=FP;
           Flags: Precursor
 gi|6448607|emb|CAB61213.1| succinate dehydrogenase Sdh1 [Schizosaccharomyces pombe]
          Length = 641

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 48/219 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD IV+G G AG  A    A+ G +TA IT     ++ T+ +    N A+G + K
Sbjct: 50  VIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTK 109

Query: 56  G-------HLVREIDALDG-----LMGRVADAAGIQFR---------------------- 81
                     V+  D L        M + A  A ++                        
Sbjct: 110 DDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQ 169

Query: 82  VLNVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
            L   KG         ADR  + +      + +    N   I+        E      ++
Sbjct: 170 SLEYGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNTN-FFIEYFAMDLIMEGGECRGVI 228

Query: 139 ---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
              ++D S+   R    +L TG + R            G
Sbjct: 229 AMNLEDGSIHRFRAHKTILATGGYGRAYFSCTSAHTCTG 267


>gi|163736609|ref|ZP_02144028.1| dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis BS107]
 gi|161390479|gb|EDQ14829.1| dihydrolipoyl dehydrogenase [Phaeobacter gallaeciensis BS107]
          Length = 464

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M   +YDVIVIG G  G  AA  AA+LG  T ++      +G +     C P    L   
Sbjct: 1   MAAETYDVIVIGAGPGGYVAAIRAAQLGLKTCIVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   ++       +  +       V+   +G A +                  ++ +  
Sbjct: 59  EVFHLMERAKDFGLKADNIGYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           + V+ GE       K  +S +  +  +  +    +VL TG   R +
Sbjct: 108 IAVVMGEAT--LPAKGKVS-VKTEKGTQELAAKNIVLATGARAREL 150


>gi|70729110|ref|YP_258846.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens Pf-5]
 gi|68343409|gb|AAY91015.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
           dehydrogenase [Pseudomonas fluorescens Pf-5]
          Length = 478

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---------SCNPAIGG 52
           + + +DV+VIG G  G  AA  AA+LG +TA I   T   G +          C P+   
Sbjct: 1   MTQKFDVVVIGAGPGGYVAAIKAAQLGFTTACIEKYTDKEGKLALGGTCLNVGCIPSKAL 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           L       E  A DG      + AG+   V      PA+ G +    + L        + 
Sbjct: 61  LDSSWKFHE--AQDGFAIHGINHAGVTMDV------PAMVGRKANIVKGLTSGVA--TLF 110

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
               +  IQG       +K  ++     D S  +I    V+L  G+
Sbjct: 111 KANGVTSIQGHGKLLAGKKVEVT---KPDGSVEVIEAENVILAPGS 153


>gi|116754708|ref|YP_843826.1| FAD dependent oxidoreductase [Methanosaeta thermophila PT]
 gi|116666159|gb|ABK15186.1| FAD dependent oxidoreductase [Methanosaeta thermophila PT]
          Length = 454

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 136/434 (31%), Gaps = 82/434 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-----------MSCNP-----AI 50
           DV+V+G G AG  AA   +  G S  ++      I             + C P      +
Sbjct: 3   DVVVVGAGPAGLFAALELSVHGKSVVVVDKGRD-ISERNCPMKKWGHCLHCEPCHIMCGM 61

Query: 51  GGLGKGH--LVREIDALDGLMGRVAD----------------------AAGIQFRVLNVK 86
           GG G     ++    A+ G + R+ D                          Q  V  + 
Sbjct: 62  GGAGTYSDGILNLHPAIGGDLTRLTDDPWALVDEVDSVFLRYGAPLETQEPTQNDVEELS 121

Query: 87  KGPAVRGPRTQADRELYR---------LAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           +  A  G R    ++ +               ++  +    V+    A    EK++   +
Sbjct: 122 RRAASVGARFIPIKQRHMGSDRTPEIIREFSNDLKRRGVRFVLNSSAADLIIEKDVCMGV 181

Query: 138 VMQDNSMIRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193
            + D   IR  + +L  G     ++  VI    +K   G +       + +  M      
Sbjct: 182 RLSDGGEIRAESTLLAPGRIGAEWIGEVIERYGIKARYGPLDVGVRVEVPSIVMDPVTRI 241

Query: 194 GRLKTGTPARLDGKTIIWDKT----------EKQFADERLIPFSFMTDKITNRQIECGIT 243
            R        +  +   + +T          ++++ D        M+ + +       + 
Sbjct: 242 NRDPKF--HIITHRYDDFIRTFCTNPGGFVVKEEYRDFIATNGHSMSGERSENTNFAFLV 299

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP-SIEDKIVRFGERNGHQIFLEPEGLNT 302
           R  LE  + I     +    +  + + G R         + R     G +I   P     
Sbjct: 300 R--LELTKPIENTTAYGISIAKLVTTIGGRRPVIQRLGDLHRGRRSTGERIARNPVRNTL 357

Query: 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YAIE-YDYINPKELFP 353
             V P  IS ALP  I       I GLE +N I PG        YA E   Y     +  
Sbjct: 358 KDVTPGDISMALPHRIVMDV---IEGLEILNEIIPGVNADSTLLYAPEIKFYAREISVDK 414

Query: 354 TLETKKISGLFLAG 367
            L+T  I  L+ AG
Sbjct: 415 DLQT-SIQSLYAAG 427


>gi|66800193|ref|XP_629022.1| squalene monooxygenase [Dictyostelium discoideum AX4]
 gi|60462383|gb|EAL60604.1| squalene monooxygenase [Dictyostelium discoideum AX4]
          Length = 502

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+ +D+IV+G G AG   A    K G     I    S          +   G    +RE+
Sbjct: 12  NKVFDIIVVGAGVAGSAFAYSLGKAGKRVLCIERDLSE--PDRIVGELMQPGGVRALREL 69

Query: 63  DALDGLMGRVADAAGI-QFRVLNVKKGPAVRGPR---------TQADRELYRLAMQREIL 112
              D L G   D++ +  + +    KG  +  P+                +   ++    
Sbjct: 70  GMEDCLDG--IDSSLVFGYGIFKHGKGTKLSYPKDSNGAIINGFSFHHGRFIQKLRLRAS 127

Query: 113 SQENLDVIQGEVAGFNTEKNIISSI 137
           S EN+ +++G V     E  II  +
Sbjct: 128 SCENVFMVEGTVNSLIEEDGIIKGV 152


>gi|330508451|ref|YP_004384879.1| hypothetical protein MCON_2647 [Methanosaeta concilii GP-6]
 gi|328929259|gb|AEB69061.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 385

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G   AG  AA  AA+ GAS  L+       G +  +          L   + A+ 
Sbjct: 4   DVLVVGASSAGMMAAISAAEGGASVMLLDRNL---GRLHHDAN-------TLFEGMAAVS 53

Query: 67  GLMGRVA--DAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           G+  +           R+L+   +G  +       DR+ +       +  +  + ++ GE
Sbjct: 54  GIEIKDCLLKKELEGMRILSPSGRGVTIPAKGYFIDRDAFDRHYLH-LAEKAGVALLSGE 112

Query: 124 VAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTG 155
           V   + E N     +       I    V+  +G
Sbjct: 113 VRSLHLEGNGRTVGLK---GVQIHARVVIDASG 142


>gi|138896237|ref|YP_001126690.1| succinate dehydrogenase flavoprotein subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250195|ref|ZP_03148889.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. G11MC16]
 gi|134267750|gb|ABO67945.1| Succinate dehydrogenase flavoprotein subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196210379|gb|EDY05144.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Geobacillus sp. G11MC16]
          Length = 585

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 107/616 (17%), Positives = 181/616 (29%), Gaps = 110/616 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E      +V+ D  + R           ++
Sbjct: 126 YAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLRSMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +                 +G+ I    T     
Sbjct: 186 AFPADAVILATGGPGIIFGKS--TNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIA--AREIFHVCVDLKLGINGENMVYLD-LSHKDPKELDVKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + + P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKVFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSIHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNKLD--CICFSRT----------------DSYIGVMIDDLTSK 418
            A   G+VAG N+ R    L+        T                 S  G     +  K
Sbjct: 394 SAIYGGMVAGPNAVRYIRGLEKSADALPSTLFDSYVKQEQEKWENILSMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      +   + A +I++   +  
Sbjct: 454 ELGEWMTANVTIVRYNDRLLKTDEKIQELMERYKNISVTDTAKWSNQGATFIRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         +    PD   F    ++ 
Sbjct: 514 LARVITLGAYNRNESRGAHYKPEFPERNDKEWLK------TTMARYTPDGPSFHYEDVDV 567

Query: 536 LQIESSYAAYTGRQMI 551
             I+     Y+ ++  
Sbjct: 568 SLIKPRKRDYSKKKEE 583


>gi|329929450|ref|ZP_08283184.1| flavoprotein family protein [Paenibacillus sp. HGF5]
 gi|328936338|gb|EGG32785.1| flavoprotein family protein [Paenibacillus sp. HGF5]
          Length = 425

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 20/167 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REI 62
            YD+IV+GGG +G  +   A + GAS  L          +     I G G+ ++   +E 
Sbjct: 3   DYDIIVVGGGPSGLMSCVAAGERGASVLL----IDKGDKLGRKLGISGGGRCNVTNAKEQ 58

Query: 63  DALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--- 116
           D L   +   GR   +A   +   ++       G R + +       +  +  S  N   
Sbjct: 59  DELIANIPGNGRFLYSAFQHWNNRDIMTFFEGLGIRLKEEDNGRMFPVTDKASSVVNALI 118

Query: 117 -------LDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   D+     V     E    S + ++   +I+ S V++ TG
Sbjct: 119 GKVKELGTDIRTNSPVNRVLYENGRTSGVELKSGEVIQSSCVIIATG 165


>gi|317496481|ref|ZP_07954831.1| hypothetical protein HMPREF0432_01435 [Gemella moribillum M424]
 gi|316913412|gb|EFV34908.1| hypothetical protein HMPREF0432_01435 [Gemella moribillum M424]
          Length = 382

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 56/180 (31%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI+IG G AG   A      G    ++               + G G+ +++   +A
Sbjct: 2   KYDVIIIGLGSAGLMVADRLNDSGLRVLVLEQNK----RAGVKLLLTGNGRCNVMSSDNA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-- 122
            D                       AV   R    R  Y     ++   + NL + Q   
Sbjct: 58  ED--------------------FVAAVHNGRFL--RSAYHKYNVKKFFDKHNLKLKQENR 95

Query: 123 ---------------------------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                                      +V     E   +  +           +VV+  G
Sbjct: 96  RLYPASEKARDVVNTFKIDHAKINYNEKVEDLIFEDEKLVGVRTNI-DTYYGKSVVICAG 154


>gi|300857163|ref|YP_003782147.1| putative FAD dependent dehydrogenase [Clostridium ljungdahlii DSM
           13528]
 gi|300437278|gb|ADK17045.1| predicted FAD dependent dehydrogenase [Clostridium ljungdahlii DSM
           13528]
          Length = 431

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 54/166 (32%), Gaps = 16/166 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DVIV+G G +G  A  V AK G    +                +GG+   H++ E
Sbjct: 1   MAEKFDVIVVGAGVSGLAATYVMAKEGLKVIV----IEKGKYPGSKNVMGGVLYRHMMDE 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-----------QADRELYRLAMQRE 110
           I         +      Q   L  K+  A  G R               R  +   + ++
Sbjct: 57  IIPEFWKEAPLERPIVEQNFWLLGKESAAKTGYRGMEWSKPPYNNFTVFRGKFDQWLSKK 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
            +    L V +  V     E N +  +     +  I    VVL  G
Sbjct: 117 CIEAGALIVNETVVKECIVENNKVVGVRTDRPDGDIYADVVVLADG 162


>gi|225572119|ref|ZP_03780983.1| hypothetical protein RUMHYD_00413 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040453|gb|EEG50699.1| hypothetical protein RUMHYD_00413 [Blautia hydrogenotrophica DSM
           10507]
          Length = 395

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 133/420 (31%), Gaps = 58/420 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++    V++IGGG +G  AA  AAK GA+  ++ H      S        G G+ +L   
Sbjct: 3   MSERKSVMIIGGGASGLMAAIFAAKEGAAVTVLEHS----QSFGKKLLATGNGRCNLTNV 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
               D   G   + A       + ++  A                      +   LDV+ 
Sbjct: 59  QIYGDSYRGSHREFAAKVLERYDNRQTIAFFSKLGIYTMNQEGRLYPHSQQASSVLDVLM 118

Query: 122 GEVAGFNTEKNIISSI-----------VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            E      +      +           V+  N       V+L TG+    +         
Sbjct: 119 MEARHRKVKLKTCEEVKVIAKEGDSFRVLTGNWTYHADRVILCTGSPASNIYGADDSGYQ 178

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT---IIWDKTEKQFADERLIPFS 227
             RM          + +          +    R+D K    I  +K  ++  + ++  + 
Sbjct: 179 LARMLGHQVIKPLPALVPLRCKGKWFSSWAGIRVDAKVTLLIDKEKKAQERGEVQMTNYG 238

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FG 286
                I                    +      A+  G        + P  E++ +R F 
Sbjct: 239 VSGIPIFQ------------------LSGYAVRALDDGRQAELLLDFLPEFEERNLRAFL 280

Query: 287 ERNGHQIFLEPE-----GLNTDVVYPNGISTALPEEI-QHQF-IRTIPGLEKVNIIRPGY 339
           +    Q   + E     GL  D + P  + T  P+ I + +  +++   +    +   G 
Sbjct: 281 QMRREQCPYKNEKELLCGLFPDKLIPILLKTGFPQSIKELRLQVQSAHSMTNAQVCSGGV 340

Query: 340 AIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINSARK 392
            +        ++ P TLE+    GL+ AG+I    G         A + G +AG ++ R+
Sbjct: 341 DV-------TQVQPRTLESSLCPGLYFAGEILDIDGACGGYNLQWAWSTGAIAGSSAGRE 393


>gi|328871614|gb|EGG19984.1| squalene monooxygenase [Dictyostelium fasciculatum]
          Length = 487

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVRE 61
            YDVI+IG G  G   A      G    ++         I      P  GG+    ++  
Sbjct: 22  DYDVIIIGAGVVGTSMAFALGNAGKQVLVVERDMSEPDRIVGELMQP--GGVKHLQMLGM 79

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKG--PAVRGPRTQADRELYRL-----AMQREILSQ 114
            D   G+    A   GI        K   P ++     A    +        ++ ++ S 
Sbjct: 80  GDCFQGIDASPAYGYGIFMGADKSTKLTYPKLQSTGENAIGYSFHHGKFINKLREKMSSA 139

Query: 115 ENLDVIQGEVAGFNTEKNIISSI 137
            N+ V++G V     + N +  +
Sbjct: 140 PNVTVVEGTVKALIEDDNQVHGV 162


>gi|307596432|ref|YP_003902749.1| Thioredoxin-disulfide reductase [Vulcanisaeta distributa DSM
          14429]
 gi|307551633|gb|ADN51698.1| Thioredoxin-disulfide reductase [Vulcanisaeta distributa DSM
          14429]
          Length = 340

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YDVI+IG G AG  AA  AA+ G  T +I+   
Sbjct: 8  YDVIIIGAGIAGLSAALYAARQGLRTLVISKDI 40


>gi|332523840|ref|ZP_08400092.1| alkyl hydroperoxide reductase, F subunit [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315104|gb|EGJ28089.1| alkyl hydroperoxide reductase, F subunit [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 510

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             +YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 206 KETYDVLVIGGGPAGNSAAIYAARKGLRTGLLA 238



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           DV VIGGG++G EAA   A L     ++        
Sbjct: 349 DVAVIGGGNSGLEAALDLAGLCKHVTVLEFLPELKA 384


>gi|325970860|ref|YP_004247051.1| HI0933 family protein [Spirochaeta sp. Buddy]
 gi|324026098|gb|ADY12857.1| HI0933 family protein [Spirochaeta sp. Buddy]
          Length = 529

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 66/230 (28%), Gaps = 36/230 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS--------------TIGSMSCNPAIGGL 53
           VIV+G G AG  A+    +LG    L+                    I     N + G  
Sbjct: 95  VIVVGAGPAGLFASLRLLELGLKPVLLERGLDVHQRKKDLAGLVRTGIVDTESNYSFGEG 154

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY---------R 104
           G G         DG +   A   G   +VLN              D   +          
Sbjct: 155 GAGAF------SDGKLYTRATKRGDVSKVLNQL-CQHGADLDILCDAHPHIGSNKLPQVI 207

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            A++  ILS       Q +V     +   +  +   D +      V+L TG   R    +
Sbjct: 208 EAIRNTILSHGGEIHFQSKVVALLRKGFTVEGVQTSDGATYFGP-VILATGHSARD---M 263

Query: 165 GKLKIPAGRMGDSPSNSLFNSF--MKFDFDTGRLKTGTPARLDGKTIIWD 212
            +     G   +S + ++       +   D  + K      L      + 
Sbjct: 264 YRYLHAEGIAVESKAMAMGVRLEHKQHLIDQMQYKQEEGRGLYLPAAEYS 313


>gi|299768991|ref|YP_003731017.1| dihydrolipoamide dehydrogenase [Acinetobacter sp. DR1]
 gi|298699079|gb|ADI89644.1| dihydrolipoamide dehydrogenase [Acinetobacter sp. DR1]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|293610894|ref|ZP_06693193.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826546|gb|EFF84912.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123210|gb|ADY82733.1| dihydrolipoamide dehydrogenase [Acinetobacter calcoaceticus
          PHEA-2]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|262371936|ref|ZP_06065215.1| dihydrolipoyl dehydrogenase [Acinetobacter junii SH205]
 gi|262311961|gb|EEY93046.1| dihydrolipoyl dehydrogenase [Acinetobacter junii SH205]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|262281281|ref|ZP_06059063.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          calcoaceticus RUH2202]
 gi|262257512|gb|EEY76248.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          calcoaceticus RUH2202]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|260549007|ref|ZP_05823229.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter sp.
          RUH2624]
 gi|260408175|gb|EEX01646.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter sp.
          RUH2624]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|226951555|ref|ZP_03822019.1| dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex)(glycine oxidation system
          L-factor) [Acinetobacter sp. ATCC 27244]
 gi|294651212|ref|ZP_06728540.1| dihydrolipoyl dehydrogenase [Acinetobacter haemolyticus ATCC
          19194]
 gi|226837697|gb|EEH70080.1| dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex)(glycine oxidation system
          L-factor) [Acinetobacter sp. ATCC 27244]
 gi|292822865|gb|EFF81740.1| dihydrolipoyl dehydrogenase [Acinetobacter haemolyticus ATCC
          19194]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|193078183|gb|ABO13130.2| dihydrolipoamide dehydrogenase [Acinetobacter baumannii ATCC
          17978]
          Length = 463

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|184159273|ref|YP_001847612.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii ACICU]
 gi|183210867|gb|ACC58265.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter baumannii
          ACICU]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|126466350|ref|YP_001041459.1| geranylgeranyl reductase [Staphylothermus marinus F1]
 gi|126015173|gb|ABN70551.1| geranylgeranyl reductase [Staphylothermus marinus F1]
          Length = 458

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIG 51
           YDVIV+G G AG  AA V A  G + A+I  K  S IG  +C  AIG
Sbjct: 2  KYDVIVVGAGVAGLNAAFVLASKGFNVAIIESKPRSRIGDKTCGDAIG 49


>gi|52549753|gb|AAU83602.1| geranylgeranyl reductase [uncultured archaeon GZfos32E4]
 gi|52550201|gb|AAU84050.1| geranylgeranyl reductase [uncultured archaeon GZfos36D8]
          Length = 420

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          M    YDV+V+G G AG   A  AA+ G    LI         + C
Sbjct: 25 MNEEKYDVVVVGAGPAGSITAKTAAERGLDVLLIERNPEIGVPVKC 70


>gi|219670606|ref|YP_002461041.1| electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540866|gb|ACL22605.1| Electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
          Length = 432

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 34/211 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL------- 53
           M    Y+VI+IG G AG  AA   AK G    ++                GG+       
Sbjct: 1   MSADKYEVIIIGAGLAGLSAAYKLAKAGMEVVVV----ERGDYPGSKNLSGGVLYSRILD 56

Query: 54  -------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYR 104
                   +  + R I      +    D   I+++   + K P  AV   R + DR    
Sbjct: 57  QLIPDFWEEAPIERYITNYLTTLMTPTDYVNIEYKDQELAKPPYNAVTVLRAKFDR---- 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF------- 157
             +  +      + V   +V     E   I+ I   D  M+    V+   G         
Sbjct: 113 -WLAEKAEEAGAMIVTGVKVDKVLKEGGRITGITTGDEEML-ADVVIAADGINSFIAQEA 170

Query: 158 -LRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
            LRG I    L + A  + + P  ++   F 
Sbjct: 171 GLRGEIEPAHLAVGAKALIELPQQAIEERFR 201


>gi|189194559|ref|XP_001933618.1| anucleate primary sterigmata protein B [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979182|gb|EDU45808.1| anucleate primary sterigmata protein B [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1568

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 7/155 (4%)

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           +  D  T K   +  R      E R+  + +         G      G+ +  R A+  +
Sbjct: 552 LQTDLATEKKESQSMRKKIRDLERRLKAQEEGQAKPPKEPGSGSEDEGDEQSSRQAELEE 611

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP------DFSIQNLFSICP 523
           E  FLR  L++  +T       ++  + D +    Y            +       ++  
Sbjct: 612 EIEFLRERLETTEITVDQWQQEALQKEADNRRMADYIKTMREKSPGGGESGYDEAVTMWK 671

Query: 524 DARKFSSLVIERLQIESSYAAYT-GRQMIEAKEIK 557
           +  +      E+++     A     +   E + ++
Sbjct: 672 EDFEDERARREQVETRCQQAESEAEKLREEVQRLR 706


>gi|163742744|ref|ZP_02150129.1| dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis 2.10]
 gi|161383999|gb|EDQ08383.1| dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis 2.10]
          Length = 464

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M   +YDVIVIG G  G  AA  AA+LG  T ++      +G +     C P    L   
Sbjct: 1   MAAETYDVIVIGAGPGGYVAAIRAAQLGLKTCIVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   ++       +  +       V+   +G A +                  ++ +  
Sbjct: 59  EVFHLMERAKDFGLKADNIGYDLDAVVKRSRGVAKQLSSG-----------IGHLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           + V+ GE       K  +S +  +  +  +    +VL TG   R +
Sbjct: 108 IAVVMGEAT--LPAKGKVS-VKTEKGTQELAAKNIVLATGARAREL 150


>gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1226

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 10/46 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+VIGGG AG EAA   A +G    L+            +PAIGG 
Sbjct: 112 VLVIGGGIAGVEAALALAGMGYRVTLVE----------KSPAIGGK 147


>gi|266623975|ref|ZP_06116910.1| dihydrolipoyl dehydrogenase [Clostridium hathewayi DSM 13479]
 gi|288864213|gb|EFC96511.1| dihydrolipoyl dehydrogenase [Clostridium hathewayi DSM 13479]
          Length = 463

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLV 59
           + + YD+IVIG G  G  AA  A+K G  TA+I  +H   T  +  C P    L    L 
Sbjct: 1   MEKHYDLIVIGAGPGGYMAALYASKAGKRTAVIERSHVGGTCLNCGCIPTKTYLHTTGLF 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           RE+   +   G   +   +    L  +K   V   R   +++L              +D+
Sbjct: 61  REVKKTE-AAGLHTEGMHVSMAELKKRKDAVVEELRAGIEKQLAAAK----------IDL 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +G   G     +++   VM +   +    ++L  G+
Sbjct: 110 YRG--NGVVCGDHLVK--VMPEGEELTAEYILLAAGS 142


>gi|22537891|ref|NP_688742.1| hypothetical protein SAG1752 [Streptococcus agalactiae 2603V/R]
 gi|22534788|gb|AAN00615.1|AE014271_10 conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           2603V/R]
          Length = 390

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 135/415 (32%), Gaps = 62/415 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  +   G  T LI         +    A  G G+ ++    +
Sbjct: 2   KHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G   + +   R        R I++  
Sbjct: 58  LDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINA- 116

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI-----P 170
            L+    E+ G       + S+  +        T    T      +I     K       
Sbjct: 117 -LENKIKELGGQIMTDTEVVSVK-KIGDSFYIKT--KDTQFASDKLIVTTGGKSYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  SF  
Sbjct: 173 TGFGHDIA--------RHFKLEVTDMEAAESPLL----TDFPHKKLQGISLDDVTLSFEK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--- 287
             IT+  +      +     RI       S +  G+          S+++  + F     
Sbjct: 221 HIITHDLLFTHFGLSGPAALRI------SSFVKGGETIYLDVLPNISVKELEIHFQNERE 274

Query: 288 ---RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
              +N  +I L PE       Y   +   + +         I  L+K+ I+  G      
Sbjct: 275 KSLKNALKILL-PE--RLAEFYAEDLPEKVKQVSVKDLEMLIQKLKKLPILVTGKMSLAK 331

Query: 341 --IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
             +    ++ KE+ P TLE+KK++GL  AG+   IN  TG      A   G VAG
Sbjct: 332 SFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|300112823|ref|YP_003759398.1| dihydrolipoamide dehydrogenase [Nitrosococcus watsonii C-113]
 gi|299538760|gb|ADJ27077.1| dihydrolipoamide dehydrogenase [Nitrosococcus watsonii C-113]
          Length = 480

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++ SYDV++IG G AG  AA   A+LG  TA          +    P++GG 
Sbjct: 1  MSNSYDVVIIGAGPAGYTAAIRCAQLGLRTAC----IDKWIAADGRPSLGGT 48


>gi|237653207|ref|YP_002889521.1| dihydrolipoamide dehydrogenase [Thauera sp. MZ1T]
 gi|237624454|gb|ACR01144.1| dihydrolipoamide dehydrogenase [Thauera sp. MZ1T]
          Length = 474

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGS---------MSCNPAI 50
          +++ +DV+VIGGG  G  AA  AA+LG  TA           G          + C P+ 
Sbjct: 1  MSKEFDVLVIGGGPGGYVAAIRAAQLGFKTACCESNPYADPKGEPRLGGTCLNVGCIPSK 60

Query: 51 GGLGKGHLVRE 61
            L   HL  E
Sbjct: 61 ALLHTSHLFEE 71


>gi|169794948|ref|YP_001712741.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AYE]
 gi|213157647|ref|YP_002320445.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB0057]
 gi|215482496|ref|YP_002324682.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB307-0294]
 gi|260557315|ref|ZP_05829531.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii ATCC 19606]
 gi|301346633|ref|ZP_07227374.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB056]
 gi|301510301|ref|ZP_07235538.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB058]
 gi|301596861|ref|ZP_07241869.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB059]
 gi|169147875|emb|CAM85738.1| dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex)(Glycine oxidation system
          L-factor) [Acinetobacter baumannii AYE]
 gi|213056807|gb|ACJ41709.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB0057]
 gi|213988410|gb|ACJ58709.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB307-0294]
 gi|260409421|gb|EEX02723.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii ATCC 19606]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|119897848|ref|YP_933061.1| dihydrolipoamide dehydrogenase [Azoarcus sp. BH72]
 gi|119670261|emb|CAL94174.1| probable dihydrolipoyl dehydrogenase [Azoarcus sp. BH72]
          Length = 474

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGS---------MSCNPAI 50
          +++ +DV+VIGGG  G  AA  AA+LG  TA           G          + C P+ 
Sbjct: 1  MSKEFDVLVIGGGPGGYVAAIRAAQLGFKTACCESNPYADPKGEPRLGGTCLNVGCIPSK 60

Query: 51 GGLGKGHLVRE 61
            L   HL  E
Sbjct: 61 ALLHTSHLFEE 71


>gi|89896442|ref|YP_519929.1| hypothetical protein DSY3696 [Desulfitobacterium hafniense Y51]
 gi|89335890|dbj|BAE85485.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 732

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V+VIGGG AG EAA +AA  G    L        G++       G+ KG 
Sbjct: 476 VMVIGGGPAGMEAARIAAARGHQVTLY----EKTGALGGKLTFAGMVKGP 521


>gi|229589339|ref|YP_002871458.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens SBW25]
 gi|229361205|emb|CAY48069.1| dihydrolipoyl dehydrogenase [Pseudomonas fluorescens SBW25]
          Length = 478

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---------SCNPAIGG 52
           +++ +DV+VIG G  G  AA  AA+LG STA I   T   G +          C P+   
Sbjct: 1   MSQKFDVVVIGAGPGGYVAAIKAAQLGLSTACIEKYTDKEGKLALGGTCLNVGCIPSKAL 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           L       E  A DG      + AG+   V      PA+ G +    + L        + 
Sbjct: 61  LDSSWKFHE--AQDGFAIHGINHAGVTMDV------PAMVGRKANIVKGLTSGVA--TLF 110

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
               +  +QG       +K  I+        +I    V+L  G+
Sbjct: 111 KANGVTSLQGHGKLLAGKKVEITK-PDGSTEIIEAENVILAPGS 153


>gi|254519298|ref|ZP_05131354.1| glucose-inhibited division protein A [Clostridium sp. 7_2_43FAA]
 gi|226913047|gb|EEH98248.1| glucose-inhibited division protein A [Clostridium sp. 7_2_43FAA]
          Length = 427

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 155/479 (32%), Gaps = 84/479 (17%)

Query: 16  AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD-GLMGRVAD 74
           AGC+AA  A K+GA   +I      +G  +    +   G+     E+  L    +  + D
Sbjct: 16  AGCQAAIQARKMGAEVHIIERTDMLLGVGNVGGIMRNNGRFTAAEELLFLGANELIDIMD 75

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
           +  +   +       A      +A+ E+ R  +   I    N+   +      + E N I
Sbjct: 76  SLALHQNIEFSGHKHANLTDIAKAEPEIRRYILSLGI----NIH-FKSRAINVSLENNSI 130

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194
           + I + D S I     + TTG+   G +           M      S  +   +      
Sbjct: 131 TRIKLADGSFIDGDVFIETTGST--GSMTNCNRYGNGCSMCILRCPSFGS--RESLSAKA 186

Query: 195 RLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIM 254
            ++     R +G                L   SF  D                    II 
Sbjct: 187 GIRDIIGERSNGTPGAMS------GSCELPRESFSED--------------------II- 219

Query: 255 ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE----PEGLNTDVVYPNGI 310
              +    Y        P+   +++    +  ++   + F E     +  +  ++     
Sbjct: 220 ---EKLDKYGVVTLPV-PKEDVNLDKLSQKVCQQYALKEFAENVILLDTGHIKLM----- 270

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYA-----IEYDYINPKELFPTLETKKISGLFL 365
            T+     + +    IPGLE    I P        I Y   +P+    +++   ++ +F 
Sbjct: 271 -TSYYPLDKLR---KIPGLENARYIDPLSGGNSNSIRYLASSPR--DNSMKILGLNNMFC 324

Query: 366 AGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPY 424
           AG+ +G   G+ E  A G +AG N+ + +     +   R  + IG +I        +E  
Sbjct: 325 AGEKSGFFVGHTEVMATGALAGYNAVKYALNEPLLILPRNLA-IGDIIAFANDALDME-- 381

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
                      SLR   +           G     R K+   Y  + N +   +KSL L
Sbjct: 382 --------NGKSLRHTFS-----------GGKYFERMKKLNLYTTDKNLIYERVKSLSL 421


>gi|28377619|ref|NP_784511.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum WCFS1]
 gi|254555798|ref|YP_003062215.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum JDM1]
 gi|300767587|ref|ZP_07077497.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308179779|ref|YP_003923907.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|28270452|emb|CAD63354.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum WCFS1]
 gi|254044725|gb|ACT61518.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum JDM1]
 gi|300494572|gb|EFK29730.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308045270|gb|ADN97813.1| thioredoxin reductase (NADPH) [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 312

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +SYDVI+IG G AG  AA  A++   S  L+
Sbjct: 1  MAKSYDVIIIGAGPAGMTAALYASRANLSVLLL 33


>gi|196228640|ref|ZP_03127506.1| HI0933 family protein [Chthoniobacter flavus Ellin428]
 gi|196226921|gb|EDY21425.1| HI0933 family protein [Chthoniobacter flavus Ellin428]
          Length = 392

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 125/416 (30%), Gaps = 68/416 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A  A K G    +I H    +G       I G G+ +         
Sbjct: 9   DVIVLGAGAAGLMCAIQAGKRGRRVTVIEHN-DRVG---KKITISGGGRCNFTNLNAGPG 64

Query: 67  GLMGRVADAAGIQ--------FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             + R  D             F  L  K G A    +     + +  +  REI+   NL 
Sbjct: 65  NYLSRQPDFCKSALARFTPWDFVALVEKHGIAYHEKKLG---QQFCDSSSREII---NLL 118

Query: 119 VIQGEVAGFNTE-KNIISSIV--------MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           + + E  G        ++ +               + C ++V+ TG      +       
Sbjct: 119 LTECEQVGVEIRLNCRVNEVRKADRFSLATNTG-TLECHSLVIATGGLSFPKLGATDFGY 177

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT--------PARLDGKTIIWDKTEKQFADE 221
              R    P   +    +   F +G  + G          AR +G +   +         
Sbjct: 178 RLARQFGLPLTEIRPGLVPLTFASGDSRLGDLSGVSVPVVARSNGTSFEENLLFTHRGVS 237

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPR-----YCP 276
                   +       +   +     +  +++ E  + S      +  + PR     +C 
Sbjct: 238 GPAVLQISSFWREGEAVAFDLLP-GRQAAQVLAEARRESIEPEALLSRFWPRRFAETWC- 295

Query: 277 SIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           +      +    N H    E + L + +   N      P    +          K  +  
Sbjct: 296 ARYAPAKKLPHLNAH----ELKDLASAL---NAWPVTFPGTEGYA---------KAEVTL 339

Query: 337 PGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEEAAAQGL-VAGINSA 390
            G       ++   L   T+E +++ GLF  G++   TG+          A  N+A
Sbjct: 340 GG-------VDTAALSSKTMEARQVPGLFFIGEVVDVTGWLGGYNFQWAWASGNAA 388


>gi|332872534|ref|ZP_08440503.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6014059]
 gi|322509187|gb|ADX04641.1| Dihydrolipoamide dehydrogenase [Acinetobacter baumannii 1656-2]
 gi|323519215|gb|ADX93596.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332739220|gb|EGJ70078.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6014059]
          Length = 481

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 5  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 51


>gi|307720385|ref|YP_003891525.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Sulfurimonas autotrophica DSM 16294]
 gi|306978478|gb|ADN08513.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Sulfurimonas autotrophica DSM 16294]
          Length = 465

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD+IVIG G AG  AA  AA+ GA   L+
Sbjct: 1  MKIHYDLIVIGAGPAGTPAAMTAAQFGAKVLLV 33


>gi|239502283|ref|ZP_04661593.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB900]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|169632626|ref|YP_001706362.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii SDF]
 gi|169151418|emb|CAP00149.1| dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex)(Glycine oxidation system
          L-factor) [Acinetobacter baumannii]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 47


>gi|241113271|ref|YP_002973106.1| Electron-transferring-flavoprotein dehydrogenase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240861479|gb|ACS59145.1| Electron-transferring-flavoprotein dehydrogenase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 435

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 60/202 (29%), Gaps = 41/202 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M N  +D IVIG G +G  AA   A  G                     L       I  
Sbjct: 1   MKNERFDAIVIGAGMSGNAAAYAMAMRGLKVLQLERGEYPGSKNVQGAILYADALERIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRE 101
              + A       HLV E       +   A   GI +R    N +K       R Q DR 
Sbjct: 61  DFRDDAPLER---HLV-EQRFW---IMDGASHTGIHYRSDDFNERKPNRYTIIRAQFDR- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQD-NSMIRCSTVVLTTGTFLR 159
            +   ++    S     + +        + +  ++ +        I    VVL  G  + 
Sbjct: 113 WFSAKVREAGCSV----LCETLATRLIQDSSGNVTGVYTDRPGEAIFADVVVLAEG--VN 166

Query: 160 GVIHIGKLKIPAGRMGDSPSNS 181
           G +         GR+ + P   
Sbjct: 167 GFLGTR------GRLREIPKPD 182


>gi|332854238|ref|ZP_08435258.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013150]
 gi|332866319|ref|ZP_08436924.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013113]
 gi|332728163|gb|EGJ59551.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013150]
 gi|332734667|gb|EGJ65771.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013113]
          Length = 481

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 5  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHN-----GKPSLGGT 51


>gi|312959846|ref|ZP_07774362.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens WH6]
 gi|311286012|gb|EFQ64577.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens WH6]
          Length = 478

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---------SCNPAIGG 52
           +++ +DV+VIG G  G  AA  AA+LG STA I   T   G +          C P+   
Sbjct: 1   MSQKFDVVVIGAGPGGYVAAIKAAQLGLSTACIEKYTDKEGKLALGGTCLNVGCIPSKAL 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
           L       E  A DG      + AG+   V      PA+ G +    + L  
Sbjct: 61  LDSSWKFHE--AQDGFAIHGINHAGVTMDV------PAMVGRKANIVKGLTS 104


>gi|295689369|ref|YP_003593062.1| dihydrolipoamide dehydrogenase [Caulobacter segnis ATCC 21756]
 gi|295431272|gb|ADG10444.1| dihydrolipoamide dehydrogenase [Caulobacter segnis ATCC 21756]
          Length = 466

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 19/164 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           ++  +DV+VIG G  G  AA  A++LG  TA++      +G +     C P    L  G 
Sbjct: 1   MSTEFDVVVIGAGPGGYVAAIRASQLGLKTAIVE--RENLGGICLNWGCIPTKALLKSGE 58

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +  ++  L G    V  A+    +++   +G A +     A            ++ +  +
Sbjct: 59  IYEQLSHLGGYGLSVEKASFDFTKIIERSRGVAKQMSSGIA-----------FLMKKHKI 107

Query: 118 DVIQGEV--AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +VI+GE      N    ++ ++    +  ++   V+L +G   R
Sbjct: 108 EVIEGEAKLEKGNPAPKLVIALKAGGSRTVQAKNVILASGARAR 151


>gi|50085914|ref|YP_047424.1| dihydrolipoamide dehydrogenase [Acinetobacter sp. ADP1]
 gi|49531890|emb|CAG69602.1| dihydrolipoamide dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex)(Glycine oxidation system
          L-factor) [Acinetobacter sp. ADP1]
          Length = 477

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 1  MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRVHK-----GKPSLGGT 47


>gi|325293180|ref|YP_004279044.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Agrobacterium sp. H13-3]
 gi|325061033|gb|ADY64724.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Agrobacterium sp. H13-3]
          Length = 402

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 23/167 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +D+ + G G AG  AA   A+ G   AL+   +          A+        +R +D
Sbjct: 2   RHFDIAITGAGLAGQIAAIALARAGRHVALVAPPSEKKD--RRTTALMD----QSIRFMD 55

Query: 64  ALDGL-----------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA----MQ 108
            L                ++ D      R   V+   +  G        +   A    + 
Sbjct: 56  RLGLWSRIAPAAARLSTMQIIDGTDRLLRAPTVQFRSSEIGLDA-FGWNIPNEALLGVLS 114

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +  + N+   +      +   + +S + + D   +    ++   G
Sbjct: 115 EAVEQEHNITRFETTAETIDIGNDRVS-VTLGDGEALSADFLIGADG 160


>gi|319783074|ref|YP_004142550.1| HI0933 family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168962|gb|ADV12500.1| HI0933 family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 392

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 129/429 (30%), Gaps = 81/429 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +SYDV++IG G AG   A  AAK G S  +         +      I G G+ +      
Sbjct: 2   QSYDVVIIGAGAAGMMCAVEAAKRGRSVLI----LDHAAAPGEKIRISGGGRCNFT---- 53

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD----RELYRLAMQREILSQENLDV 119
                      A+   F   N     +     TQ D     E +R+A   + L Q   D 
Sbjct: 54  --------NIHASPKNFLSGNPHFCISALSRYTQRDFIALVERHRIAYHEKTLGQLFCDG 105

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
              ++      +        V+  +       V     T   G I    L +  G     
Sbjct: 106 SARQIIDMLVSEMQDKGAELVLSTSVEDVRKIVEGFVLTLSTGTISCQSLVVACG-GKSI 164

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
           P         +     G     T   L   T   +  E+            +     + +
Sbjct: 165 PKMGATGFGYELAERFGLAIVETRPALVPLTFDANTLERLAP---------LAGNAVDAE 215

Query: 238 IECGITRTNLE---THRIIMEN---IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG- 290
           + CG T+ +     THR +         S    GD           + D ++R  +R   
Sbjct: 216 VACGKTQFSEAMLFTHRGVSGPSILQISSYWREGDEIRIAMLPGVDVAD-LIRSAKRGNG 274

Query: 291 ----------------HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNI 334
                            Q   E  G++ ++            ++    I+TI        
Sbjct: 275 RQAVQTVLANHLPKRLAQSIAERTGIDGNL-----------ADLADAQIKTIAAAVNDWR 323

Query: 335 IRPGYAIEYD-------YINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAA 380
           I+P  +  Y         ++   L   T++ K + GLF  G++   TG+        A +
Sbjct: 324 IKPAGSEGYRTAEVTLGGVDTNRLDQKTMQAKSVPGLFFIGEVVDVTGWLGGYNFQWAWS 383

Query: 381 QGLVAGINS 389
            G VAG  +
Sbjct: 384 SGWVAGQAA 392


>gi|148990514|ref|ZP_01821652.1| hypothetical protein CGSSp6BS73_03461 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147924230|gb|EDK75327.1| hypothetical protein CGSSp6BS73_03461 [Streptococcus pneumoniae
          SP6-BS73]
          Length = 486

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGHLVR 60
          YDV++IG G +G  AA  + +LG  T LI  K S IG +  N  +G            V 
Sbjct: 2  YDVVIIGAGSSGALAAIASGRLGLKTCLIE-KGSRIGGVPINTLMGSFANLYFDDSGRVN 60

Query: 61 EIDALDGLMGRVADAAGIQF 80
              +  L+ R+    G  F
Sbjct: 61 ASKIVGELIERIIKKGGTVF 80


>gi|299744723|ref|XP_002910830.1| FAD binding domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298406259|gb|EFI27336.1| FAD binding domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 616

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IG G AG  A    AKLG    ++  +   +        I G   G   R ++   
Sbjct: 14  DVLIIGAGPAGLMACHALAKLGIRVRIVDKRPEKL--------IAGQADGIQPRTMEIFQ 65

Query: 67  --GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR--ELYRLAMQREILSQENLDVIQG 122
             GL+ R+                P   G     DR  ++     +        + + QG
Sbjct: 66  SYGLLERLLKEGNQIHTAAFY--NPNAHGTIELTDRVPDVTAPTARYPFE----VTLHQG 119

Query: 123 EVAGFNTEKNIISSI 137
            +     +    S +
Sbjct: 120 AIEAIFMDSMAASGV 134


>gi|256827480|ref|YP_003151439.1| thioredoxin reductase [Cryptobacterium curtum DSM 15641]
 gi|256583623|gb|ACU94757.1| thioredoxin reductase [Cryptobacterium curtum DSM 15641]
          Length = 297

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 45/154 (29%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+VIG G AG  AA  AA  G    L                           E  
Sbjct: 2   QQYDVLVIGAGPAGISAAVYAASRGKQVGLF--------------------------EAQ 35

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A+ G++GRV+      +  +      A      Q  R L   A+         +D+I+  
Sbjct: 36  AVGGMIGRVS--TVTHYASV------ASGETGAQFARRLEEQAIDA------GVDIIRER 81

Query: 124 V--AGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           V  A    E+    S+            ++L  G
Sbjct: 82  VVLAKLTDEE---KSVTTTAGKTFGAPRIILANG 112


>gi|126459686|ref|YP_001055964.1| geranylgeranyl reductase [Pyrobaculum calidifontis JCM 11548]
 gi|126249407|gb|ABO08498.1| geranylgeranyl reductase [Pyrobaculum calidifontis JCM 11548]
          Length = 452

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGGLGKGHLV 59
           M + ++DV+V G G AG   + + AK G   AL+  K+   +G  +C   +G      + 
Sbjct: 1   MSSENFDVVVAGAGTAGSYISYLLAKAGFKVALLESKSGNELGVKTCGDGLGLHHVERMS 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           R +     +     +  G++    + +    +RG     DR  +   +  E   +    +
Sbjct: 61  RHLTPNPRVFQNKIE--GVELISPDERTRLLIRGEGYVLDRFGWGKWLIEE-AVRAGATL 117

Query: 120 IQG-EVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGT 156
            +G        E   +  +             R   VV +TG+
Sbjct: 118 FEGHTATAPIVENGSVVGVKAVERRTGSTKEFRARVVVDSTGS 160


>gi|300856040|ref|YP_003781024.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
 gi|300436155|gb|ADK15922.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
          Length = 665

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + +  +V+VIGGG AG EAA  AA+LG ST L   K
Sbjct: 379 VTKQTNVVVIGGGTAGLEAACTAAELGCSTFLFEKK 414


>gi|167550744|ref|ZP_02344501.1| protein FixC [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205324404|gb|EDZ12243.1| protein FixC [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 428

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1   MSEDIIDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + D   +     N +   + +      R++ D     
Sbjct: 57  RIIPGFADQAPIERMITHEKLAFMTDKGAMTMDYCNGEDAASSQVSYSVLRSKFD----A 112

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             M++   +   L +    V         +  +   D  ++    V+L  G
Sbjct: 113 WLMEQAEEAGAQL-ITGIRVDNVVQRDGKVVGVE-ADGDILEAKVVILADG 161


>gi|220923898|ref|YP_002499200.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
 gi|219948505|gb|ACL58897.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
          Length = 435

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 14/151 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAI 50
           M   ++D IV+G G +G   A   AK G     +                   M      
Sbjct: 1   MSFETFDAIVVGAGMSGNACAFTLAKRGLKVLQLERGETAGSKNVQGAILYADMLEQLVP 60

Query: 51  GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                  L R +      +   A   G+ +R  N  +    +  R    R  +     R 
Sbjct: 61  DFRDDAPLERHVLEQRLWIMDGASHVGMHYRSDNFNE---EKPNRYTIIRTQFDRWFSRR 117

Query: 111 ILSQENLDVIQGEVAGFNTE-KNIISSIVMQ 140
           +       + +        +    +  +   
Sbjct: 118 VQEAGVTLLCETTATELIRDLYGRVVGVRTD 148


>gi|329929937|ref|ZP_08283600.1| FAD dependent oxidoreductase [Paenibacillus sp. HGF5]
 gi|328935676|gb|EGG32142.1| FAD dependent oxidoreductase [Paenibacillus sp. HGF5]
          Length = 383

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 49/169 (28%), Gaps = 25/169 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++  DV+VIG G AG   A   AK G  T L                  G       RE
Sbjct: 1   MSKQADVLVIGAGVAGTSCALQLAKQGHRTIL----LDRQSFPRHKTC--GEFMSPETRE 54

Query: 62  IDALDGLMGR-------VADAAGIQFRVLNVKKGP----AVRGPRTQADRELYRLAMQRE 110
           +    G+  +         D A I      V   P    A    R + DR L+  A+   
Sbjct: 55  MLEYLGVHLQVQEVNPAAMDHASIVMPHGGVITAPLPGNATGISRYELDRLLHENALSAG 114

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM---IRCSTVVLTTGT 156
                   V    V       +    +  +  +         V+   GT
Sbjct: 115 AE-----IVTGSTVTEIRKRGDQRYEVETRQGNEQVRYEARAVIGAYGT 158


>gi|239623579|ref|ZP_04666610.1| NADH oxidase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521610|gb|EEQ61476.1| NADH oxidase [Clostridiales bacterium 1_7_47FAA]
          Length = 640

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++VIGGG +GCEAA   A++G    L+
Sbjct: 351 ILVIGGGPSGCEAALELARMGHKVTLV 377


>gi|111025872|ref|YP_708292.1| fumarate reductase [Rhodococcus jostii RHA1]
 gi|110824851|gb|ABH00134.1| possible fumarate reductase [Rhodococcus jostii RHA1]
          Length = 444

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDAL 65
           DV+VIG G AG  AAA +   G+S  ++  K++T+G  +           H ++ E++  
Sbjct: 7   DVLVIGAGMAGLTAAARSLSRGSSVIVVE-KSATVGGSAQFAGYAWTAPSHEVMDEVNPN 65

Query: 66  DGLMGRVADAAGIQ-----FRVLNVKKGPAVRGPRT----QADRELYRLAMQREILSQEN 116
                R A   G        R L+V+   AV   R     Q D   Y    ++ I     
Sbjct: 66  GSPALRRALVDGFAPGIEWIRSLDVECADAVTVLRYGTGHQFDTNQYIGECRKRIRVGGE 125

Query: 117 LDVIQGEVAGFNTEKNIISS--IVMQDNS--MIRCSTVVLTTGTF 157
           L +         TE   +    + + D +   IR    ++ TG F
Sbjct: 126 L-ITSTSTLRLLTEDGSVVGARVRLADGTEREIRARATIIATGGF 169


>gi|117925686|ref|YP_866303.1| dihydrolipoamide dehydrogenase [Magnetococcus sp. MC-1]
 gi|117609442|gb|ABK44897.1| dihydrolipoamide dehydrogenase [Magnetococcus sp. MC-1]
          Length = 468

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHL 58
           ++ ++D++VIGGG  G  AA  AA+LG  TA I  + +  G+   + C P+   L   H 
Sbjct: 1   MSDTFDLVVIGGGPGGYVAAIRAAQLGLKTACIDKRPTLGGTCLNVGCIPSKALLQSSHQ 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL------ 112
           +          G            +  +K   V+G  TQ    L++      ++      
Sbjct: 61  LETAQHAMAAHGVEIKGVKANLTTMMQRKQEVVQGL-TQGIAFLFKKNKVTHLMGSGTIV 119

Query: 113 --SQENLDVIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             S   +    G V    TE  +I+S   +       I    ++ +TG      +    +
Sbjct: 120 DSSHVQVTAADGSVQTLTTENILIASGSEVATLPGLEIDEKHIISSTGALALDKVPKKMV 179

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLK--TGTPARLDGK 207
            I AG         L + + +   +   ++   G    +DG+
Sbjct: 180 VIGAG----VIGLELGSVWRRLGAEVTVVEFLDGILPGMDGE 217


>gi|310779428|ref|YP_003967761.1| NADH:flavin oxidoreductase/NADH oxidase [Ilyobacter polytropus DSM
           2926]
 gi|309748751|gb|ADO83413.1| NADH:flavin oxidoreductase/NADH oxidase [Ilyobacter polytropus DSM
           2926]
          Length = 649

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +VIV+GGG AGCEAA   A+ G   +L+     
Sbjct: 513 EVIVLGGGLAGCEAAIHFAREGKKVSLVEMNEE 545



 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 14/115 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G G  G +AA  AAK G    L    +   G +     IG         E+  L  
Sbjct: 391 VLVVGAGPGGLKAAITAAKRGHEVVLCEQNSEVGGIL-----IGEQAI-PFKHEMYQLGV 444

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            +G++A+ AG+  R LN       R  +  AD+E    A+   + S+  L  I+G
Sbjct: 445 TLGKLAEDAGVDIR-LNT------RVDKAYADKEN-ADAIIIAVGSEPFLPPIEG 491


>gi|323526375|ref|YP_004228528.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Burkholderia sp. CCGE1001]
 gi|323383377|gb|ADX55468.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Burkholderia sp. CCGE1001]
          Length = 463

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI  S DV+VIG G AG  AA  A++ G +  L+  + +  G +  +       +  L+ 
Sbjct: 1  MIPESVDVVVIGAGPAGMTAATTASRAGLNVVLLDDQMTAGGQIYRSITRADEARVALLG 60

Query: 61 EIDALDGLMGRVADAAGIQFRV 82
             A    +      + ++   
Sbjct: 61 PDYASGSTIAAALSESNVRHET 82


>gi|229488837|ref|ZP_04382703.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
 gi|229324341|gb|EEN90096.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
          Length = 465

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGH 57
           +  YDV+VIGGG  G  AA  AA+LG + AL+            G +     + G    H
Sbjct: 7   SHKYDVLVIGGGPGGYVAAIRAAQLGLNVALVERDRLGGICLNWGCIPTKAMLHGADVAH 66

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            + E+D           +A +QF +  +         R       Y       ++ +  +
Sbjct: 67  TLSELDTYG------FSSASVQFDISKLVSFSRGVSERLSGG-VAY-------LMKKNGV 112

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           DVI G        K +   +V       R   V++ TG   R +
Sbjct: 113 DVISGAA------KLVDKGVVSVGGQTYRADHVIIATGARPRSI 150


>gi|284992743|ref|YP_003411297.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Geodermatophilus obscurus DSM 43160]
 gi|284065988|gb|ADB76926.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Geodermatophilus obscurus DSM 43160]
          Length = 467

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS----CNPA---IGGLGKGHLVR 60
           +++IGGG AG EAA VAA LGA   ++      +G  S    C P+   I   G    VR
Sbjct: 4   IVIIGGGPAGYEAALVAASLGAEVTVVE--RDGVGGASVLTDCVPSKTFIASAGVMTNVR 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +  AL G+ G      GI    +N + KG AV   ++   R        R +  Q  L  
Sbjct: 62  DSTAL-GVQGSELATVGIDLPAVNQRVKGLAVA--QSADIRARLVAEGVRVLPGQGRLS- 117

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
              EV G    +  +   V   +  + C  V++ TG   R
Sbjct: 118 --DEVRGLAEHRVQVVDAVGAVSETLECDVVLIATGADPR 155


>gi|316934170|ref|YP_004109152.1| Ubiquinone biosynthesis hydroxylase [Rhodopseudomonas palustris
           DX-1]
 gi|315601884|gb|ADU44419.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhodopseudomonas palustris DX-1]
          Length = 415

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 15/163 (9%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            SYD IV+GGG AG  AA   A  GA TAL+  + +  G       +G      ++  +D
Sbjct: 26  NSYDAIVVGGGPAGLTAAIALADSGAITALVA-RRAPYGDNRTTALLGDSID--ILDRLD 82

Query: 64  ALDGLMGRVADAAGIQF--RVLNVKKGPAVR--GPRTQADRELYRLAMQREILSQE---- 115
                 G+ A    ++       + + P V+        D   Y +  +  +++ E    
Sbjct: 83  VWRRCSGKAAALRAMRLVDDTGRLIRAPEVKFASQEIGMDAFGYNIENRTLLIALEERAA 142

Query: 116 ---NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              NL+    E        +    + ++    +  + VV   G
Sbjct: 143 ELSNLERFDDEADSVVPGDDEAV-VRLRGGMTLSATLVVGADG 184


>gi|333003790|gb|EGK23326.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri VA-6]
          Length = 429

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|332343418|gb|AEE56752.1| electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli UMNK88]
          Length = 429

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|323169277|gb|EFZ54953.1| putative electron transfer flavo-quinone oxidoreductase ydiS domain
           protein [Shigella sonnei 53G]
          Length = 209

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|315618896|gb|EFU99479.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Escherichia coli 3431]
          Length = 429

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|24112904|ref|NP_707414.1| hypothetical protein SF1531 [Shigella flexneri 2a str. 301]
 gi|110805492|ref|YP_689012.1| hypothetical protein SFV_1525 [Shigella flexneri 5 str. 8401]
 gi|24051850|gb|AAN43121.1| flavoprotein [Shigella flexneri 2a str. 301]
 gi|110615040|gb|ABF03707.1| Probable electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Shigella flexneri 5 str. 8401]
 gi|281600936|gb|ADA73920.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri 2002017]
 gi|332758737|gb|EGJ89056.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri 2747-71]
 gi|332759248|gb|EGJ89557.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri K-671]
 gi|332762561|gb|EGJ92826.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri 4343-70]
 gi|332767239|gb|EGJ97434.1| flavoprotein (electron transport), possibly involved in anaerobic
           carnitine metabolism [Shigella flexneri 2930-71]
 gi|333004364|gb|EGK23895.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri K-218]
 gi|333018148|gb|EGK37450.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri K-304]
          Length = 429

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|16129655|ref|NP_416214.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108539|ref|AP_002319.1| predicted oxidoreductase, FAD/NAD(P)-binding domain [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081358|ref|YP_001730678.1| oxidoreductase [Escherichia coli str. K-12 substr. DH10B]
 gi|238900914|ref|YP_002926710.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia
           coli BW2952]
 gi|256022637|ref|ZP_05436502.1| hypothetical protein E4_04639 [Escherichia sp. 4_1_40B]
 gi|300951293|ref|ZP_07165141.1| FAD dependent oxidoreductase [Escherichia coli MS 116-1]
 gi|300958582|ref|ZP_07170711.1| FAD dependent oxidoreductase [Escherichia coli MS 175-1]
 gi|301027854|ref|ZP_07191156.1| FAD dependent oxidoreductase [Escherichia coli MS 196-1]
 gi|301647884|ref|ZP_07247665.1| FAD dependent oxidoreductase [Escherichia coli MS 146-1]
 gi|307138359|ref|ZP_07497715.1| hypothetical protein EcolH7_09540 [Escherichia coli H736]
 gi|331642297|ref|ZP_08343432.1| putative electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli H736]
 gi|2829655|sp|P77337|YDIS_ECOLI RecName: Full=Probable electron transfer flavoprotein-quinone
           oxidoreductase ydiS
 gi|1742778|dbj|BAA15468.1| predicted oxidoreductase, FAD/NAD(P)-binding domain [Escherichia
           coli str. K12 substr. W3110]
 gi|1787991|gb|AAC74769.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889193|gb|ACB02900.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238862752|gb|ACR64750.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli BW2952]
 gi|260449178|gb|ACX39600.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia coli
           DH1]
 gi|299879039|gb|EFI87250.1| FAD dependent oxidoreductase [Escherichia coli MS 196-1]
 gi|300314764|gb|EFJ64548.1| FAD dependent oxidoreductase [Escherichia coli MS 175-1]
 gi|300449445|gb|EFK13065.1| FAD dependent oxidoreductase [Escherichia coli MS 116-1]
 gi|301073996|gb|EFK88802.1| FAD dependent oxidoreductase [Escherichia coli MS 146-1]
 gi|309701924|emb|CBJ01236.1| putative flavoprotein [Escherichia coli ETEC H10407]
 gi|315136340|dbj|BAJ43499.1| hypothetical protein ECDH1ME8569_1643 [Escherichia coli DH1]
 gi|323937302|gb|EGB33581.1| FAD dependent oxidoreductase [Escherichia coli E1520]
 gi|323940634|gb|EGB36825.1| FAD dependent oxidoreductase [Escherichia coli E482]
 gi|331039095|gb|EGI11315.1| putative electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli H736]
          Length = 429

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|298714041|emb|CBJ27273.1| glycine oxidase ThiO [Ectocarpus siliculosus]
          Length = 866

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 66/222 (29%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK----------- 55
           DV+VIGGG AG   A   AK G    +++   +   + +    I    +           
Sbjct: 16  DVVVIGGGLAGLSTALELAKRGKQVTVLSRNRAEAAAEAAGGMIAPQAERLESGPYLDLC 75

Query: 56  -------GHLVREIDALDGLMGRVA-DAAGIQFRVLNVKK-------------------- 87
                     VR I+A+ G+ G  A +    + R                          
Sbjct: 76  LTSRAMYAEWVRSIEAIAGMGGEKAGEKTAAETRTHFWSTGGFMSPAFEGDAVHVWSPPP 135

Query: 88  --GPAVRGPRTQA-------------------DRELYRLAMQREIL---SQENLDVIQGE 123
             G A    R QA                   D  +    M R +    S+  +++++G 
Sbjct: 136 EGGQAHWIGRDQALEMEPSLSPDIVGAWWFPQDMSIDAQRMFRVLEQACSKGGVEILEGT 195

Query: 124 VAGFNT---EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            A       E   + ++V+ D   +  + VV  TG ++R ++
Sbjct: 196 AAASLVYDSEGTSVDAVVLDDGRQVHANAVVSATGAWMRELM 237


>gi|149199610|ref|ZP_01876643.1| hypothetical protein LNTAR_13077 [Lentisphaera araneosa HTCC2155]
 gi|149137263|gb|EDM25683.1| hypothetical protein LNTAR_13077 [Lentisphaera araneosa HTCC2155]
          Length = 396

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 117/398 (29%), Gaps = 52/398 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD++VIG G AG   A +AAK    T +I H             I G G+ +     
Sbjct: 4   NPKYDLVVIGAGAAGLMCAGLAAKKDIKTLIIDHNP----KPGRKIIISGGGRCNFTNLN 59

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
              D  + +         +         +    +    E     +  +  S   L ++Q 
Sbjct: 60  IQPDRYLSQNPRFCISALKRYTQHDFIKLVKSHSLTFHEKTLGQLFCDQKSHAILAILQE 119

Query: 123 EVAGFNTE---KNIISSIV--------MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           E    + +   +  +S +            N  +    +V+ +G      I         
Sbjct: 120 ECRSKHVDTHYQCEVSEVRKLDNGFELTTSNGKVFTQKLVIASGGLSMPKIGATNFAYKI 179

Query: 172 GRMGD-------SPSNSLFNSFMKFDFDTGRLKTGTPARLD---GKTIIWDKTEKQFADE 221
            +  +               S  K +           A++      +   +         
Sbjct: 180 AKQFELNLIPTRPGLVPFTLSGEKLELAKSLAGVAIEAKVSLNKKTSFRENILFTHRGIS 239

Query: 222 RLIPFSFMTDKITNRQIEC-GITRTNLETHRIIMENIKHSAIYSGD--IKSYGPRYCPSI 278
                   +    ++ +    +   N E    I E  K  A  + D  +KSY P+    +
Sbjct: 240 GPAILQISSYWQESQPVFFNFLPDENPE--EFINELRKTRAKENLDQVLKSYLPKKFIEL 297

Query: 279 EDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG 338
               +R  ++   Q+         +++       ++             G     +   G
Sbjct: 298 F---LRAPQKPMAQLSKVEINKIKEML----FQCSITPSGTE-------GYRTAEVTLGG 343

Query: 339 YAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
                  ++ +EL   ++E +K+ GL+  G+    TG+
Sbjct: 344 -------LDTRELSSKSMEVQKVPGLYFIGESVDVTGW 374


>gi|313889759|ref|ZP_07823401.1| flavoprotein family protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121804|gb|EFR44901.1| flavoprotein family protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 390

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 138/421 (32%), Gaps = 78/421 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++       
Sbjct: 4   FDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNNSSLD 59

Query: 66  DGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQENL 117
           + L      GR   +   QF   ++ +     G + + +   R        + I   E L
Sbjct: 60  ELLAGIPGNGRFLYSVFSQFDNHDIIRFFQENGVKLKEEDHGRMFPITDKSKTI--IEAL 117

Query: 118 DVIQGEVAGFNTEKNIISSIVMQ--------DNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           D    E+ G       I S+  +        ++ +   S +++TTG              
Sbjct: 118 DKKIRELGGQVLTGTEIVSVKKEGDQFLLRSNDQVFSSSKLIVTTGG------KSYPSTG 171

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
             G   D            F+     L+      L      +   E Q      I  S  
Sbjct: 172 STGFGHDIA--------RHFNIKVTDLEAAESPLL----TDFPHKELQGISLDDITLSCG 219

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
              IT+  +      +     R+       S +  G+I           ED +  F E N
Sbjct: 220 KHIITHDLLFTHFGLSGPAALRL------SSFVKGGEIAELDFL-PQMSEDLLNSFLEEN 272

Query: 290 GHQIFLEPEGLNTDVVYPNGISTALPEEI-------QHQFIRTIP----------GLEKV 332
             +               + +STA PE++       + + +  +            L K 
Sbjct: 273 REKSVKNALRTLVPERVAHFLSTAFPEKVKQLTASQKEELVTKLKQFPIPITGKMSLAKS 332

Query: 333 NIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVA 385
            + + G       I+ KE+ P TLE+K++ GL  AG+   IN  TG      A   G VA
Sbjct: 333 FVTKGG-------IDLKEINPKTLESKRVPGLHFAGEVLDINAHTGGFNITSALCSGWVA 385

Query: 386 G 386
           G
Sbjct: 386 G 386


>gi|313890359|ref|ZP_07823990.1| alkyl hydroperoxide reductase, F subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121202|gb|EFR44310.1| alkyl hydroperoxide reductase, F subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 510

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             +YDV+V+GGG AG  AA  AA+ G  T L+ 
Sbjct: 206 KETYDVLVVGGGPAGNSAAIYAARKGLRTGLLA 238



 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           DV VIGGG++G EAA   A L     ++        
Sbjct: 349 DVAVIGGGNSGLEAALDLAGLCKHVTVLEFLPELKA 384


>gi|297583701|ref|YP_003699481.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Bacillus selenitireducens MLS10]
 gi|297142158|gb|ADH98915.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Bacillus selenitireducens MLS10]
          Length = 590

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 142/443 (32%), Gaps = 82/443 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+  +G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAERGMTVDLFSVVPVKRSHSVCAQGGINGALNTMGEGDSTWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNV------KKGPAVRGPRTQADRELYRLA 106
                  G        +  + DAA     +L+       +    +   R     + +R A
Sbjct: 66  FDDSVYGGDFLANQPPVKAMCDAAPGIIHLLDRMGVMFNRTAEGLLALRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EV G     E       V+ D+++ R  T      + ++
Sbjct: 126 FAGATTGQQLLYALDEQVRRHEVNGLVNKYEGWEFLHAVLDDDNVCRGITAQDLNSSEIQ 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +   +    +        +G+ I    T     
Sbjct: 186 SFRGDAVILATGGPGIIFGKS--TNSMINTGYAAAAVYEQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R         N +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRV---WTYDENGKPWYFLEEKY--------------PAYGNLVP 285

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H    +  G+N  ++VY + +S   P+E+  +    +   E        
Sbjct: 286 RDIAT--REIFHVCVDKKLGINGENMVYLD-LSHKDPKELDIKLGGIMEIYEKFMGDDPR 342

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------GTTGYE 376
           KV + I P  A+ Y      ++  ++        I GLF AG+++         G     
Sbjct: 343 KVPMKIFP--AVHYSMGGLWVDYDQMT------NIPGLFAAGEVDYSIHGANRLGANSLL 394

Query: 377 EAAAQGLVAGINSARKSNKLDCI 399
            +   G+VAG  +A   + LD +
Sbjct: 395 SSIFGGMVAGPKAAEYIDGLDQL 417


>gi|254786520|ref|YP_003073949.1| dihydrolipoamide dehydrogenase [Teredinibacter turnerae T7901]
 gi|237685334|gb|ACR12598.1| dihydrolipoyl dehydrogenase [Teredinibacter turnerae T7901]
          Length = 483

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---------SMSCNPAIGG 52
          ++  YDVIVIG G AG  AA  AA+LG  TA I       G         ++ C P+   
Sbjct: 1  MSNKYDVIVIGSGPAGYVAAIRAAQLGLKTACIEKWKDKQGNGVNGGTCLNVGCIPSKAL 60

Query: 53 LGKGHLVREID 63
          L   H   E  
Sbjct: 61 LDSSHKYHEAK 71


>gi|241204555|ref|YP_002975651.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240858445|gb|ACS56112.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 403

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTAL---ITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + ++V VIGGG AG  AA   A+ G + AL   +  K     +   + +I  L +  L  
Sbjct: 2   KRFEVAVIGGGLAGMIAAIALARGGRNVALVAPLAPKEDRRTTALMDQSIRFLDRLALWE 61

Query: 61  EIDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----Q 114
           ++      +   R+ D      R        A  G            A+   +      +
Sbjct: 62  KLRPAAAPLTSMRIVDGTDRLLRAPTTTFRAAEVGLDA-FGYNFPNKALNGILEEAAAGE 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            N+          +     +S I +     +     V   G
Sbjct: 121 GNITRFTDMAESIDISAEAVS-IRITGGETLSADFAVGADG 160


>gi|325294012|ref|YP_004279876.1| succinate dehydrogenase flavoprotein subunit [Agrobacterium sp.
           H13-3]
 gi|325061865|gb|ADY65556.1| succinate dehydrogenase flavoprotein subunit [Agrobacterium sp.
           H13-3]
          Length = 613

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 62/220 (28%), Gaps = 51/220 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ SYDVIV+G G AG  A    A+ G  TA IT    T        A GG+        
Sbjct: 17  VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACITKVFPTRS--HTVAAQGGIAASLTNMT 74

Query: 62  IDALD----------------GLMGRVADAAGIQFRVL---------------------- 83
            D                     M  +A  A      L                      
Sbjct: 75  PDCWQWHLYDTVKGSDWLGDVDAMQYLAMEAPKAVYELEHYGVPFSRNAEGKIYQRPFGG 134

Query: 84  ---NVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQGEVAGFNTE-KNIISSI 137
              N  +GP V+     ADR  + +       S  N     I+              + +
Sbjct: 135 HMQNYGEGPPVQRTCAAADRTGHAILHTLYGQSLRNNAEFFIEYFALDLIMAPDGRCTGV 194

Query: 138 V---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V   + D ++       VVL TG + R            G
Sbjct: 195 VAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTG 234


>gi|86158246|ref|YP_465031.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774757|gb|ABC81594.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 484

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGH 57
           M  ++YD IVIG G  G  AA   A+LG   AL+    +  G      C P+   +   +
Sbjct: 1   MPTQTYDAIVIGAGTGGYPAAIRLAQLGKKVALVEKDATLGGVCLNWGCIPSKALIAAAN 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           LV E+       G +A+   +    L   K   V+                  +     +
Sbjct: 61  LVDEMRGAADR-GIIAEPPRVDVAKLREFKDGVVKKLTGGV----------ALLEKGNGV 109

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGT 156
           +V++G              +  +D    R     +++ TG 
Sbjct: 110 EVVRGTAT---VVGPTAVEVAGKDGQKTRLEAGAILVATGA 147


>gi|15889899|ref|NP_355580.1| succinate dehydrogenase flavoprotein subunit [Agrobacterium
           tumefaciens str. C58]
 gi|15157850|gb|AAK88365.1| succinate dehydrogenase flavoprotein subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 613

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 62/220 (28%), Gaps = 51/220 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ SYDVIV+G G AG  A    A+ G  TA IT    T        A GG+        
Sbjct: 17  VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACITKVFPTRS--HTVAAQGGIAASLTNMT 74

Query: 62  IDALD----------------GLMGRVADAAGIQFRVL---------------------- 83
            D                     M  +A  A      L                      
Sbjct: 75  PDCWQWHLYDTVKGSDWLGDVDAMQYLAMEAPKAVYELEHYGVPFSRNAEGKIYQRPFGG 134

Query: 84  ---NVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQGEVAGFNTE-KNIISSI 137
              N  +GP V+     ADR  + +       S  N     I+              + +
Sbjct: 135 HMQNYGEGPPVQRTCAAADRTGHAILHTLYGQSLRNNAEFFIEYFALDLIMAPDGRCTGV 194

Query: 138 V---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V   + D ++       VVL TG + R            G
Sbjct: 195 VAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTG 234


>gi|304394278|ref|ZP_07376201.1| succinate dehydrogenase, flavoprotein subunit [Ahrensia sp. R2A130]
 gi|303293718|gb|EFL88095.1| succinate dehydrogenase, flavoprotein subunit [Ahrensia sp. R2A130]
          Length = 602

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 69/219 (31%), Gaps = 50/219 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK- 55
           I+ + DV V+G G AG  A   AA+ G  TA IT     ++ T+ +      ++G +GK 
Sbjct: 13  IDHTVDVCVVGAGGAGLRATLGAAQAGLKTACITKVFPTRSHTVAAQGGVAASLGNMGKD 72

Query: 56  ------------GHLVREIDALDGLMGRV------ADAAGIQFRVLNVKK---------- 87
                          + + DA++ L           D  G+ F      K          
Sbjct: 73  TWQWHMYDTVKGSDWLGDQDAIEYLCREAPKAVYELDHFGVPFSRTEEGKIYQRPFGGMT 132

Query: 88  -----GPAVRGPRTQADRELYRLAMQREILSQ----ENLDVIQGEVAGFNTEKNIISSIV 138
                GP  +     ADR  +  AM   +  Q    +    I+        E      ++
Sbjct: 133 TEYGEGPPAQRTCAAADRTGH--AMLHTLYGQSLKYDAEFYIEYFAIDLIMEDGACRGVI 190

Query: 139 -----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                  +    R    +L TG + R            G
Sbjct: 191 CMDLATGELHRFRAHKTILATGGYGRAYFSCTSAHTCTG 229


>gi|15889098|ref|NP_354779.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Agrobacterium tumefaciens
           str. C58]
 gi|15156902|gb|AAK87564.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Agrobacterium tumefaciens
           str. C58]
          Length = 402

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +D+ + G G AG  AA   A+ G   ALI   +      +             +R +D
Sbjct: 2   RHFDIAITGAGLAGQIAAIALARAGRHVALIAPSSEKKDQRTTALM------DQSIRFMD 55

Query: 64  ALDGL-----------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA----MQ 108
            L                ++ D      R   V+   +  G        +   A    + 
Sbjct: 56  RLGLWSRIAPSAARLSTMQIIDGTDRLLRAPTVQFRSSEIGLDA-FGWNIPNEALLGVLS 114

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +  + N+  +       +   + IS + + D  ++    ++   G
Sbjct: 115 EAVEQEHNITRLDTTAETIDIGNDRIS-VTIADGEVLSADFLIGADG 160


>gi|301064028|ref|ZP_07204490.1| putative digeranylgeranylglycerophospholipid reductase [delta
          proteobacterium NaphS2]
 gi|300441873|gb|EFK06176.1| putative digeranylgeranylglycerophospholipid reductase [delta
          proteobacterium NaphS2]
          Length = 349

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          M   + D+++IG G AG  AA  AAK+G    ++  +      + C   I     G L
Sbjct: 1  MKPVTCDILIIGAGPAGSSAAITAAKMGMDVLVVEQRPEIGVPVQCAEYIPAPFVGQL 58


>gi|302559109|ref|ZP_07311451.1| monooxygenase, FAD-binding [Streptomyces griseoflavus Tu4000]
 gi|302476727|gb|EFL39820.1| monooxygenase, FAD-binding [Streptomyces griseoflavus Tu4000]
          Length = 427

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 50/168 (29%), Gaps = 19/168 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   A+ G    L+  KT       C   +       LV     + 
Sbjct: 11  DVIVVGAGPAGSTTAYHLARSGLDVLLLE-KTEFPREKVCGDGLTPRAVKQLVSMGIDIS 69

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +           +Q    ++   P   +   R   D +L R A +      E 
Sbjct: 70  EEAGWLRNKGLRIIGGGVRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYER 129

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLR 159
            +V    V         I+ +  +              VV   G   R
Sbjct: 130 CNVSGPIVDD---RTGRITGVKAKLGEDKREVTFHAPLVVAADGNSTR 174


>gi|13542326|ref|NP_112014.1| geranylgeranyl reductase [Thermoplasma volcanium GSS1]
 gi|14325761|dbj|BAB60664.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 374

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 21/179 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREI--D 63
           DVIVIG G +G  AA   +K+G    L+         + C   +          R I   
Sbjct: 3   DVIVIGAGPSGSYAAYRLSKMGLDVLLLEEHKEVGKPVECTGLVSKRVLDFVKTRSIAGK 62

Query: 64  ALD---------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
                        +     D   + +R    K   A+        R   R    +   + 
Sbjct: 63  VYGANIYFPNGKSIHVEKNDETIVLYRDSFDKDVAAMAIGAGADIRINARAISVK--ENN 120

Query: 115 ENLDVIQGEVAGFNTEKNIIS-------SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           +++ V   +      +   +        S+V +D   IR   VV T    + G I   +
Sbjct: 121 DSVTVKYRDSGQLKEDNAKVVIGADGINSVVRRDLYRIRQEKVVSTLQYDMAGKIEDER 179


>gi|332090845|gb|EGI95937.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Shigella boydii 5216-82]
          Length = 266

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|323978164|gb|EGB73250.1| FAD dependent oxidoreductase [Escherichia coli TW10509]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|323968468|gb|EGB63874.1| FAD dependent oxidoreductase [Escherichia coli M863]
 gi|327252816|gb|EGE64470.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli STEC_7v]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|323170014|gb|EFZ55670.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS domain protein [Escherichia coli LT-68]
          Length = 341

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|320195405|gb|EFW70030.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Escherichia coli WV_060327]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|331663179|ref|ZP_08364089.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA143]
 gi|331058978|gb|EGI30955.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA143]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|331657677|ref|ZP_08358639.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA206]
 gi|315299732|gb|EFU58972.1| FAD dependent oxidoreductase [Escherichia coli MS 16-3]
 gi|331055925|gb|EGI27934.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA206]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|331653099|ref|ZP_08354104.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli M718]
 gi|331049197|gb|EGI21269.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli M718]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|306815047|ref|ZP_07449203.1| hypothetical protein ECNC101_23433 [Escherichia coli NC101]
 gi|305851695|gb|EFM52148.1| hypothetical protein ECNC101_23433 [Escherichia coli NC101]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|300904552|ref|ZP_07122390.1| FAD dependent oxidoreductase [Escherichia coli MS 84-1]
 gi|301306660|ref|ZP_07212719.1| FAD dependent oxidoreductase [Escherichia coli MS 124-1]
 gi|300403517|gb|EFJ87055.1| FAD dependent oxidoreductase [Escherichia coli MS 84-1]
 gi|300838122|gb|EFK65882.1| FAD dependent oxidoreductase [Escherichia coli MS 124-1]
 gi|315257498|gb|EFU37466.1| FAD dependent oxidoreductase [Escherichia coli MS 85-1]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|301026939|ref|ZP_07190333.1| FAD dependent oxidoreductase [Escherichia coli MS 69-1]
 gi|300395249|gb|EFJ78787.1| FAD dependent oxidoreductase [Escherichia coli MS 69-1]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|297518277|ref|ZP_06936663.1| hypothetical protein EcolOP_11603 [Escherichia coli OP50]
          Length = 256

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|293410014|ref|ZP_06653590.1| oxidoreductase FixC [Escherichia coli B354]
 gi|291470482|gb|EFF12966.1| oxidoreductase FixC [Escherichia coli B354]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|281178769|dbj|BAI55099.1| putative flavoprotein FixC [Escherichia coli SE15]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|222033455|emb|CAP76196.1| electron transfer flavoprotein-quinone [Escherichia coli LF82]
 gi|312946300|gb|ADR27127.1| hypothetical protein NRG857_08515 [Escherichia coli O83:H1 str.
          NRG 857C]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|218705198|ref|YP_002412717.1| hypothetical protein ECUMN_1989 [Escherichia coli UMN026]
 gi|293405197|ref|ZP_06649189.1| oxidoreductase FixC [Escherichia coli FVEC1412]
 gi|298380840|ref|ZP_06990439.1| electron transfer flavoprotein-quinone oxidoreductase
          [Escherichia coli FVEC1302]
 gi|300898518|ref|ZP_07116852.1| FAD dependent oxidoreductase [Escherichia coli MS 198-1]
 gi|218432295|emb|CAR13185.1| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
          [Escherichia coli UMN026]
 gi|284921620|emb|CBG34692.1| putative flavoprotein [Escherichia coli 042]
 gi|291427405|gb|EFF00432.1| oxidoreductase FixC [Escherichia coli FVEC1412]
 gi|298278282|gb|EFI19796.1| electron transfer flavoprotein-quinone oxidoreductase
          [Escherichia coli FVEC1302]
 gi|300357811|gb|EFJ73681.1| FAD dependent oxidoreductase [Escherichia coli MS 198-1]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|218689644|ref|YP_002397856.1| hypothetical protein ECED1_1901 [Escherichia coli ED1a]
 gi|218427208|emb|CAR08094.2| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
          [Escherichia coli ED1a]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|215486874|ref|YP_002329305.1| hypothetical protein E2348C_1784 [Escherichia coli O127:H6 str.
          E2348/69]
 gi|312966853|ref|ZP_07781071.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli 2362-75]
 gi|215264946|emb|CAS09332.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli O127:H6 str. E2348/69]
 gi|312288317|gb|EFR16219.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli 2362-75]
 gi|323187124|gb|EFZ72440.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli RN587/1]
 gi|324007058|gb|EGB76277.1| FAD dependent oxidoreductase [Escherichia coli MS 57-2]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|213422276|ref|ZP_03355342.1| hypothetical protein Salmonentericaenterica_32853 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 78

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|125717197|ref|YP_001034330.1| flavoprotein [Streptococcus sanguinis SK36]
 gi|125497114|gb|ABN43780.1| Flavoprotein, putative [Streptococcus sanguinis SK36]
          Length = 391

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D          +  C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDGLFTVRSSGQIWTCQKLIVTTG 163


>gi|170019951|ref|YP_001724905.1| hypothetical protein EcolC_1932 [Escherichia coli ATCC 8739]
 gi|312969728|ref|ZP_07783911.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli 1827-70]
 gi|169754879|gb|ACA77578.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia
          coli ATCC 8739]
 gi|310338013|gb|EFQ03102.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli 1827-70]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|91210913|ref|YP_540899.1| hypothetical protein UTI89_C1892 [Escherichia coli UTI89]
 gi|117623877|ref|YP_852790.1| hypothetical protein APECO1_775 [Escherichia coli APEC O1]
 gi|218558569|ref|YP_002391482.1| hypothetical protein ECS88_1750 [Escherichia coli S88]
 gi|237705646|ref|ZP_04536127.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072487|gb|ABE07368.1| probable electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli UTI89]
 gi|115513001|gb|ABJ01076.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli APEC O1]
 gi|218365338|emb|CAR03059.1| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
          [Escherichia coli S88]
 gi|226900403|gb|EEH86662.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294494089|gb|ADE92845.1| protein fixC [Escherichia coli IHE3034]
 gi|307626814|gb|ADN71118.1| hypothetical protein UM146_08655 [Escherichia coli UM146]
 gi|315286374|gb|EFU45810.1| FAD dependent oxidoreductase [Escherichia coli MS 110-3]
 gi|323952206|gb|EGB48079.1| FAD dependent oxidoreductase [Escherichia coli H252]
 gi|323956600|gb|EGB52338.1| FAD dependent oxidoreductase [Escherichia coli H263]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|82777045|ref|YP_403394.1| hypothetical protein SDY_1791 [Shigella dysenteriae Sd197]
 gi|309788482|ref|ZP_07683086.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Shigella dysenteriae 1617]
 gi|81241193|gb|ABB61903.1| YdiS [Shigella dysenteriae Sd197]
 gi|308923864|gb|EFP69367.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Shigella dysenteriae 1617]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|26247950|ref|NP_753990.1| hypothetical protein c2095 [Escherichia coli CFT073]
 gi|227885880|ref|ZP_04003685.1| oxidoreductase with FAD/NAD(P)-binding domain protein
          [Escherichia coli 83972]
 gi|300994841|ref|ZP_07180954.1| FAD dependent oxidoreductase [Escherichia coli MS 45-1]
 gi|301050969|ref|ZP_07197815.1| FAD dependent oxidoreductase [Escherichia coli MS 185-1]
 gi|26108353|gb|AAN80555.1|AE016761_130 Probable electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Escherichia coli CFT073]
 gi|227837453|gb|EEJ47919.1| oxidoreductase with FAD/NAD(P)-binding domain protein
          [Escherichia coli 83972]
 gi|300297346|gb|EFJ53731.1| FAD dependent oxidoreductase [Escherichia coli MS 185-1]
 gi|300406181|gb|EFJ89719.1| FAD dependent oxidoreductase [Escherichia coli MS 45-1]
 gi|307553720|gb|ADN46495.1| FixC-like protein [Escherichia coli ABU 83972]
 gi|315290519|gb|EFU49893.1| FAD dependent oxidoreductase [Escherichia coli MS 153-1]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|194438516|ref|ZP_03070605.1| protein FixC homolog [Escherichia coli 101-1]
 gi|253773346|ref|YP_003036177.1| hypothetical protein ECBD_1947 [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161759|ref|YP_003044867.1| hypothetical protein ECB_01668 [Escherichia coli B str. REL606]
 gi|293415014|ref|ZP_06657657.1| oxidoreductase FixC [Escherichia coli B185]
 gi|300930830|ref|ZP_07146200.1| FAD dependent oxidoreductase [Escherichia coli MS 187-1]
 gi|194422526|gb|EDX38524.1| protein FixC homolog [Escherichia coli 101-1]
 gi|242377423|emb|CAQ32174.1| putative flavoprotein [Escherichia coli BL21(DE3)]
 gi|253324390|gb|ACT28992.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973660|gb|ACT39331.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli B str. REL606]
 gi|253977854|gb|ACT43524.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli BL21(DE3)]
 gi|291432662|gb|EFF05641.1| oxidoreductase FixC [Escherichia coli B185]
 gi|300461305|gb|EFK24798.1| FAD dependent oxidoreductase [Escherichia coli MS 187-1]
 gi|323962083|gb|EGB57679.1| FAD dependent oxidoreductase [Escherichia coli H489]
 gi|323973921|gb|EGB69093.1| FAD dependent oxidoreductase [Escherichia coli TA007]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|188493195|ref|ZP_03000465.1| protein FixC homolog [Escherichia coli 53638]
 gi|188488394|gb|EDU63497.1| protein FixC homolog [Escherichia coli 53638]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|193068927|ref|ZP_03049886.1| protein FixC homolog [Escherichia coli E110019]
 gi|192957722|gb|EDV88166.1| protein FixC homolog [Escherichia coli E110019]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|110641820|ref|YP_669550.1| hypothetical protein ECP_1646 [Escherichia coli 536]
 gi|191171689|ref|ZP_03033236.1| protein FixC homolog [Escherichia coli F11]
 gi|300987750|ref|ZP_07178328.1| FAD dependent oxidoreductase [Escherichia coli MS 200-1]
 gi|110343412|gb|ABG69649.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli 536]
 gi|190908019|gb|EDV67611.1| protein FixC homolog [Escherichia coli F11]
 gi|300306038|gb|EFJ60558.1| FAD dependent oxidoreductase [Escherichia coli MS 200-1]
 gi|324011463|gb|EGB80682.1| FAD dependent oxidoreductase [Escherichia coli MS 60-1]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|157154713|ref|YP_001462994.1| hypothetical protein EcE24377A_1916 [Escherichia coli E24377A]
 gi|157076743|gb|ABV16451.1| protein fixC homolog [Escherichia coli E24377A]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|327459093|gb|EGF05441.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK1057]
          Length = 391

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D             C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDGLFTVRSSDQTWTCQKLIVTTG 163


>gi|325281381|ref|YP_004253923.1| alkyl hydroperoxide reductase, F subunit [Odoribacter splanchnicus
           DSM 20712]
 gi|324313190|gb|ADY33743.1| alkyl hydroperoxide reductase, F subunit [Odoribacter splanchnicus
           DSM 20712]
          Length = 517

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            + YDV+++GGG AG  AA  +A+ G   A+I 
Sbjct: 209 EKKYDVLIVGGGPAGSSAAIYSARKGLKVAIIA 241


>gi|225155222|ref|ZP_03723716.1| putative protein involved in invasion [Opitutaceae bacterium
          TAV2]
 gi|224803977|gb|EEG22206.1| putative protein involved in invasion [Opitutaceae bacterium
          TAV2]
          Length = 515

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+IV GGG +G  AA  AA+ G    LI
Sbjct: 19 HYDLIVCGGGPSGVPAALAAARNGLKVLLI 48


>gi|84490108|ref|YP_448340.1| dehydrogenase [Methanosphaera stadtmanae DSM 3091]
 gi|84373427|gb|ABC57697.1| predicted dehydrogenase [Methanosphaera stadtmanae DSM 3091]
          Length = 386

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLVREI 62
           +YD+IV+GGG  G   A   AKLG   AL   K      + C   +        +L RE 
Sbjct: 3   NYDIIVVGGGPIGSTYAYKMAKLGYDVALFDMKNRIGQPLQCAGLVSTNIDDTKNLPREF 62

Query: 63  --DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             + + G      +   I     N     A    R   D+ L+  A+   + +      I
Sbjct: 63  ISNEVRGANLISPNKTTIHVEKDNTV---AYVLDRVLYDKYLFDRAINAGVDAH-----I 114

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMI-RCSTVVLTTGTFLR 159
              V   +          ++  +   R   + +  G   +
Sbjct: 115 GTMVDDVDINNTT-----LRIGNAYHRAKLIAVACGPNSK 149


>gi|332157657|ref|YP_004422936.1| thioredoxin reductase [Pyrococcus sp. NA2]
 gi|331033120|gb|AEC50932.1| thioredoxin reductase [Pyrococcus sp. NA2]
          Length = 330

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 48/177 (27%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI+IG G AG  AA  AA+ G  T +IT                           
Sbjct: 15  SKVWDVIIIGAGPAGYTAAIYAARFGLDTIIITKDL------------------------ 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G M  + D       ++    G       ++  + +Y    +        +DVI  
Sbjct: 51  ---GGNMA-ITD-------LIENYPGFPEGISGSELSKRMYEQVRKY------GVDVIID 93

Query: 123 EVAGFN------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           EV   +       E     ++   +    +  T+++  G   R  +++   K   GR
Sbjct: 94  EVVRIDPAECAYYEGPCQFTVKTANGKEYKSKTIIIAVGAEPR-KLNVPGEKEFTGR 149


>gi|320181271|gb|EFW56190.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Shigella boydii ATCC 9905]
          Length = 396

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|308465222|ref|XP_003094872.1| hypothetical protein CRE_01291 [Caenorhabditis remanei]
 gi|308246436|gb|EFO90388.1| hypothetical protein CRE_01291 [Caenorhabditis remanei]
          Length = 374

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 60/198 (30%), Gaps = 15/198 (7%)

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           + G  +  N+  +           T+       + +      EP ++     +  + L+ 
Sbjct: 109 SGGASSPGNAKVRCPGAGVWSVKDTEMM----PNHVEIPQSKEPTQLHIDLGKLYMELQE 164

Query: 440 DNADN-----RLTPIGMKLGCIGE----RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
                     +L     ++ C+ +    + Q+      Q  + L +    +    +N+  
Sbjct: 165 AKKPQEALMTQLAAKDKEVECLTDQLEAKDQEATNIREQHISKLAARDSEVRRWKENVKD 224

Query: 491 TSI-SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-VIERLQIESSYAAYTGR 548
               +  Q        + L   D  I+ L    P+        +I +L  +     Y  +
Sbjct: 225 LDERNENQRKSIYHYRQILKEKDRDIEALKERVPELEAEPQEALIAQLAAKDKEMEYLKK 284

Query: 549 QMIEAKEIKFEEKRLIPK 566
           Q  E    + +E   I +
Sbjct: 285 QHEEKLAAQSQENTFIRE 302


>gi|239929616|ref|ZP_04686569.1| electron transfer oxidoreductase [Streptomyces ghanaensis ATCC
           14672]
 gi|291437940|ref|ZP_06577330.1| electron transfer oxidoreductase [Streptomyces ghanaensis ATCC
           14672]
 gi|291340835|gb|EFE67791.1| electron transfer oxidoreductase [Streptomyces ghanaensis ATCC
           14672]
          Length = 427

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + + DVIV+G G AG   A   A+ G    L+  KT       C   +       LV   
Sbjct: 7   DNTADVIVVGAGPAGSTTAYHLARAGLDVLLLE-KTEFPREKVCGDGLTPRAVKQLVSMG 65

Query: 63  DALDGLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREIL 112
             +    G + +           +Q    ++   P   +   R   D +L R A +    
Sbjct: 66  IDISEEAGWLRNKGLRIIGGGVRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGAR 125

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
             E  +V        +     I+ +  +          R   VV   G   R
Sbjct: 126 LYERCNV---GAPIIDDRTGRITGVKAKLGEEKREVTFRAPLVVAADGNSTR 174


>gi|293570570|ref|ZP_06681622.1| opine oxidase subunit A [Enterococcus faecium E980]
 gi|291609358|gb|EFF38628.1| opine oxidase subunit A [Enterococcus faecium E980]
          Length = 43

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + + YDVIV+G G +G  AA  AA+ GA   LI   
Sbjct: 1  MEKLYDVIVVGAGTSGMMAAISAAEQGARVLLIEKN 36


>gi|284164071|ref|YP_003402350.1| thioredoxin reductase [Haloterrigena turkmenica DSM 5511]
 gi|284013726|gb|ADB59677.1| Thioredoxin reductase-like protein [Haloterrigena turkmenica DSM
           5511]
          Length = 333

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AGC A    A+ G  T +    +S++   +C     G   G    E +   
Sbjct: 14  DVAVIGGGPAGCSAGVFTARYGLETVVFDRGSSSLRRCACLENYLGFPCGI---EAERFL 70

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
            L    A  AG + R   V    A+ G   +AD
Sbjct: 71  ELAQTHAREAGCRLREELVDSVAALEGGEFEAD 103


>gi|167841508|ref|ZP_02468192.1| pyridine nucleotide-disulphide oxidoreductase, class II
          [Burkholderia thailandensis MSMB43]
          Length = 301

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNP-AIGGL 53
           +DVIVIGG HAG  AA   A+      +I           H    IG    +P AI   
Sbjct: 9  HFDVIVIGGSHAGQSAALQIARARRRVLVIDAGTRRNRFAAHSHGVIGQDGRSPDAIAAE 68

Query: 54 GKGHLV 59
          GK  L+
Sbjct: 69 GKAQLL 74


>gi|116754026|ref|YP_843144.1| geranylgeranyl reductase [Methanosaeta thermophila PT]
 gi|116665477|gb|ABK14504.1| geranylgeranyl reductase [Methanosaeta thermophila PT]
          Length = 386

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVRE-- 61
           YDV VIG G AG  AA  A+  GA T ++    +    + C   +G        +  E  
Sbjct: 4   YDVAVIGAGPAGLMAAKHASMCGARTIVLEEHMAIGYPVQCAGLLGISALEASEIQTEGF 63

Query: 62  -IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            I+   G +    + + + F+  NV+   A    R   DR +   A+   +    N  V 
Sbjct: 64  LINPFKGAVFVSPNGSRLSFKSPNVR---AWAVDRRLFDRSMALAAVHHGVEITLNAHVR 120


>gi|260893131|ref|YP_003239228.1| geranylgeranyl reductase [Ammonifex degensii KC4]
 gi|260865272|gb|ACX52378.1| geranylgeranyl reductase [Ammonifex degensii KC4]
          Length = 375

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 23/167 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S+ VIV+G G AG   A   A+ G S  L+  KT       C   +       L   
Sbjct: 1   MKSSWPVIVVGAGPAGALCACSLARAGLSVLLLE-KTHFPREKPCGGGLTPKAAALLPFS 59

Query: 62  -IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE----- 115
               ++G + R          +L +    A+       DR +    ++REIL        
Sbjct: 60  FQSVVEGEVKRA---------ILCLPGVEALEIN---WDRPV-CFLVRREILDTHLAEQA 106

Query: 116 ---NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                 + +GE      E     ++     +  R   V+   G   R
Sbjct: 107 RQAGAFLREGEEVVRIEETGEAVTVTTAGGASYRAQLVIGADGALSR 153


>gi|77918978|ref|YP_356793.1| dehydrogenase, flavoprotein containing [Pelobacter carbinolicus
          DSM 2380]
 gi|77545061|gb|ABA88623.1| dehydrogenase, flavoprotein containing [Pelobacter carbinolicus
          DSM 2380]
          Length = 384

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV V+GGG AG  AA   AK G    ++
Sbjct: 1  MDQKIYDVAVVGGGPAGTMAAIGLAKRGIDVCIL 34


>gi|312135647|ref|YP_004002985.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor owensensis OL]
 gi|311775698|gb|ADQ05185.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor owensensis OL]
          Length = 462

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 137/472 (29%), Gaps = 92/472 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTS-------------TIGSMSC 46
           +++ YDVI++G G  G   A    K    A   +                    I    C
Sbjct: 1   MSKVYDVIIVGAGPCGIFTAYELIKSNSFAKVIIFEKGRDIESRECPKRVTNVCISCKPC 60

Query: 47  NPAIGGLGKG---------------------------HLVREIDALDGLMGRVADAAGIQ 79
           N   G  G G                            L++ +D++    G  +   G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFVGQHKAMELIKYVDSIYLENGADSKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDVI-QGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRLQDFLLAN--NVEIRFRTSVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E   ++ +V +D ++     VV+  G    G   + K+        ++    +     
Sbjct: 179 VVEDGKVAGVVAEDGNVYHAKNVVICVG--REGATWLSKIIEKYNIPCENNRVDIGVRVE 236

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQIECG 241
                    K  T    + K I + KT     D+++  F          +   N  +  G
Sbjct: 237 T---PNHIWKGITEHLYESKFIYYTKT----FDDKVRTFCMNPGGYVAVEHYDNLAVVNG 289

Query: 242 ITRTNLE---------THRIIMENIKHSAIYSGDI-----KSYGPRYCPSIEDKIVRFGE 287
            +  N++           +   +  K S  Y   I        G +         +R   
Sbjct: 290 HSYKNIKSDNTNFALLVSKHFTDPFKDSIKYGKYIAELANMLSGGKVLVQRYGDFIRGRR 349

Query: 288 RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK-----VNIIRPGYAIE 342
            N  +I                +S  LP  I       I  L+       +     Y +E
Sbjct: 350 SNEERIRRNSVVPTLQDAVAGDLSLVLPYRIMLDIKEMIEALDYVVQGVASFDTLLYGVE 409

Query: 343 -YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSARK 392
              Y N  ++    E   I  L+  G   G T G  +A+  G++     A K
Sbjct: 410 VKFYSNEVKVKNNFECLTIQNLYFGGDGAGITRGLMQASVNGVLIAREIANK 461


>gi|144899279|emb|CAM76143.1| Dehydrogenases (flavoproteins) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 433

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 53/176 (30%), Gaps = 35/176 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           ++ ++D IVIG G +G   A V AK G +                   L       I   
Sbjct: 1   MSETFDAIVIGAGPSGNACAYVMAKAGLNVLQIERGEYSGSKNVQGAILYADALERI--- 57

Query: 45  SCNPAIGGLGKGHLVREIDALDGLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADREL 102
              P         L R I      M  + D A  G  +R     +    R  R    R  
Sbjct: 58  --IPDFREDA--PLERHIVEQ--RMWILDDKAHVGGHYRSDAFNE---ERPNRYTIIRAQ 108

Query: 103 YRLAMQREILSQENLDVIQGEVAGFN-TEKNIISSIVM--QDNSMIRCSTVVLTTG 155
           +     R++     L V +  V       K  +  +    +D  +     VV+  G
Sbjct: 109 FDKWFSRKVREAGALVVCETTVTELIKDGKGKVIGVRTDREDGDVY-ADVVVMADG 163


>gi|309807626|ref|ZP_07701570.1| hypothetical protein HMPREF9211_0538 [Lactobacillus iners LactinV
           01V1-a]
 gi|308169123|gb|EFO71197.1| hypothetical protein HMPREF9211_0538 [Lactobacillus iners LactinV
           01V1-a]
          Length = 92

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYR 434
           Y E+A  GLVAGIN++ ++     I F + ++ IG M + +TS                 
Sbjct: 1   YVESAGSGLVAGINASLRAIGESPIVFPK-NTAIGSMANYITSTSA-------------- 45

Query: 435 ISLRPDNADNRLTP-IGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
            + +P NA   L P +  K+    ER   +    + E N  ++ 
Sbjct: 46  KNFQPMNASYSLMPQLEKKIRNKQERHLMQSKIALDELNEFKNK 89


>gi|218661574|ref|ZP_03517504.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhizobium etli IE4771]
          Length = 238

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH---KTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ VIGGG AG  AA   A+ G S AL+     K     +   + +I  L +  L  
Sbjct: 2   KTFEIAVIGGGLAGMIAAIALARGGRSVALVAPVAAKEDRRTTALMDQSIRFLDRLTLWD 61

Query: 61  EIDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----Q 114
            +      +   R+ D      R        A  G            A+   +      +
Sbjct: 62  RLRPAAAPLTSMRIIDGTDRLLRAPTTTFRAAEVGLAA-FGYNFPNKALIDILEQATAGE 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            N+                +S I +     +     V   G
Sbjct: 121 GNISRFTDMAEAIEISAEKVS-ITLAGGETLAADFAVGADG 160


>gi|213421386|ref|ZP_03354452.1| hypothetical protein Salmonentericaenterica_28119 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213422257|ref|ZP_03355323.1| hypothetical protein Salmonentericaenterica_32758 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 78

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|326509013|dbj|BAJ86899.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 531

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 66  DVIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLMELGLQDCV 125

Query: 60  REIDALDGLMGRVA--DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA   ++G     D    +      K    V G      R  +   M+ +  S  N+
Sbjct: 126 DEIDAQ-RVLGYALFKDGKNTKLSYPLEKFHSDVAGRSFHNGR--FIQRMREKAASLPNV 182

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            + QG V     E   +  +   ++    ++ 
Sbjct: 183 QLEQGTVTSLLEENGTVKGVQYKIKSGEELKA 214


>gi|83952646|ref|ZP_00961376.1| dihydrolipoamide dehydrogenase [Roseovarius nubinhibens ISM]
 gi|83835781|gb|EAP75080.1| dihydrolipoamide dehydrogenase [Roseovarius nubinhibens ISM]
          Length = 464

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M ++S+D+IVIG G  G  AA   A+LG   A++       I    G +     +     
Sbjct: 1   MASQSFDLIVIGAGPGGYVAAIRGAQLGLKVAVVEREHMGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL     D       V+   +G A +     A            +L + 
Sbjct: 61  FHLMHRAKEF-GLSAEKID--YDIDAVVKRSRGVAKQLSGGVA-----------HLLKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            +  I GE       K  ++ +  +  S  +    +VL TG   R +
Sbjct: 107 KVTAIMGEAT--IPAKGKVT-VKTEKGSEELTAKHIVLATGARAREL 150


>gi|152992801|ref|YP_001358522.1| pyruvate/2-oxoglutarate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Sulfurovum sp. NBC37-1]
 gi|151424662|dbj|BAF72165.1| pyruvate/2-oxoglutarate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Sulfurovum sp. NBC37-1]
          Length = 464

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD++VIG G  G  AA  AA+ G S  L+  + +  G       I      +     +
Sbjct: 2   KKYDLVVIGAGPGGTPAAMAAAQFGKSVLLVDKRDAPGGECLFEGCIPSKVLENAANRFE 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               +     D  G +          AV   + Q  +     A+++ +    NL+  QG 
Sbjct: 62  IFKEMKAFHIDVDGKE-----QIHWEAVLEDKKQILKRRSMGALKQ-VERFPNLEFRQGT 115

Query: 124 VAGFNTEKNIISSIVMQDNSMIRC 147
               +T    +    +  +  I  
Sbjct: 116 ARFTDTHTIDVDGEKIAFDHAIIA 139


>gi|223983803|ref|ZP_03633971.1| hypothetical protein HOLDEFILI_01252 [Holdemania filiformis DSM
           12042]
 gi|223964242|gb|EEF68586.1| hypothetical protein HOLDEFILI_01252 [Holdemania filiformis DSM
           12042]
          Length = 756

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V+VIGGG AG EAA +AA+ G S  L        G +    +     KG 
Sbjct: 499 VMVIGGGPAGLEAARIAAERGHSVTLY----EKKGVLGGLLSFANAVKGP 544


>gi|229543371|ref|ZP_04432431.1| FAD dependent oxidoreductase [Bacillus coagulans 36D1]
 gi|229327791|gb|EEN93466.1| FAD dependent oxidoreductase [Bacillus coagulans 36D1]
          Length = 381

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIV+G G  G  A    A+ G  T L+
Sbjct: 1  MEKHYDVIVVGAGSMGMAAGYFLARQGVKTLLL 33


>gi|260904773|ref|ZP_05913095.1| hypothetical protein BlinB_05539 [Brevibacterium linens BL2]
          Length = 417

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 21/175 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YD I+ GGG AG  A  + A+ G    ++                G       +R +
Sbjct: 10  ENEYDCIISGGGPAGIVAGLLLARGGVRVVVLEKHNDFFRDFR-----GDTIHPSTLRLL 64

Query: 63  DALD--GLMGRVADAAGIQFRVL----------NVKKGPAVRGPRTQADRELYRLAMQRE 110
           D L       R+         ++          ++ +        T A +  +   + R 
Sbjct: 65  DELGLYNEFARITHRRVTNISLIGDDGQDYILGDLSRLNTPHPFMTIAPQWDFLNLLARA 124

Query: 111 ILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDNSM-IRCSTVVLTTGTFLRGV 161
              +   D+  G E+     + + +  +     D  + +R   VV   G + +  
Sbjct: 125 GEDEPGFDLRMGVEMTSLIWDDDRVVGVRAQTPDGEIALRAPLVVAADGRWSKAR 179


>gi|75911196|ref|YP_325492.1| glucose-inhibited division protein A [Anabaena variabilis ATCC
           29413]
 gi|75704921|gb|ABA24597.1| Glucose-inhibited division protein A [Anabaena variabilis ATCC
           29413]
          Length = 535

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 55/182 (30%), Gaps = 42/182 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH--------- 57
           DV++IGGG AG  AA  AA  GA   L+       G    + A    G G          
Sbjct: 15  DVLIIGGGPAGTWAAWSAATSGAKVVLV-----DKGYCGTSGAAAASGNGVWYVPPDPEQ 69

Query: 58  ---LVREIDALDG------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----LY 103
               +   +A+ G       M RV D        L  +  P       +  R       Y
Sbjct: 70  REAAMASREAMGGFLADRHWMTRVLDRTYDNINSLADEGYPFSVDADGKVIRRSLQGPDY 129

Query: 104 RLAMQR--------EILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLT 153
              M+R         +     L+++                I  Q      +R   VV+ 
Sbjct: 130 MRFMRRKIKQAGVKILDHSPALELL----VDIEGSVAGAKGINRQSGERWTVRSKAVVIA 185

Query: 154 TG 155
           TG
Sbjct: 186 TG 187


>gi|242279217|ref|YP_002991346.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio salexigens DSM 2638]
 gi|242122111|gb|ACS79807.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio salexigens DSM 2638]
          Length = 303

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   +YD+I++G G AG +AA  +A+ G    ++
Sbjct: 1  MTETNYDIIILGAGPAGLQAAIHSARKGLKVLIL 34


>gi|220917211|ref|YP_002492515.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955065|gb|ACL65449.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 484

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGH 57
           M  ++YD IVIG G  G  AA   A+LG   ALI    +  G      C P+   +   +
Sbjct: 1   MPTQTYDAIVIGAGTGGYPAAIRLAQLGKKVALIEKDATLGGVCLNWGCIPSKALIAAAN 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           LV E+       G +A+   +    L   K   V+                  +     +
Sbjct: 61  LVDEMRGAADR-GIIAEPPRVDVAKLREFKDGVVKKLTGGV----------ALLEKGNGV 109

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGT 156
           +V++G           ++    +D    R     +++ TG 
Sbjct: 110 EVVRGTATVVAPNAVEVAG---KDGQKTRLEAGAILVATGA 147


>gi|15826394|pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 gi|15826395|pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
 gi|61680085|pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
          Complexed With Nad+
 gi|61680086|pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
          Complexed With Nad+
          Length = 478

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  K   +G    ++ C P+   L   H
Sbjct: 2  INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-KRGKLGGTCLNVGCIPSKALLNNSH 60

Query: 58 LVREID 63
          L  ++ 
Sbjct: 61 LFHQMH 66


>gi|14318501|ref|NP_116635.1| Lpd1p [Saccharomyces cerevisiae S288c]
 gi|118678|sp|P09624|DLDH_YEAST RecName: Full=Dihydrolipoyl dehydrogenase, mitochondrial;
          AltName: Full=Dihydrolipoamide dehydrogenase; AltName:
          Full=Glycine decarboxylase complex subunit L; AltName:
          Full=Lipoamide dehydrogenase component of pyruvate
          dehydrogenase complex; AltName: Full=Pyruvate
          dehydrogenase complex E3 component; Flags: Precursor
 gi|171390|gb|AAA34565.1| dihydrolipoamide dehydrogenase [Saccharomyces cerevisiae]
 gi|171848|gb|AAB63974.1| lipoamide dehydrongenase [Saccharomyces cerevisiae]
 gi|559939|emb|CAA86354.1| lpd1, dhlp1 [Saccharomyces cerevisiae]
 gi|836736|dbj|BAA09220.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae]
 gi|285811876|tpg|DAA12421.1| TPA: Lpd1p [Saccharomyces cerevisiae S288c]
          Length = 499

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  K   +G    ++ C P+   L   H
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-KRGKLGGTCLNVGCIPSKALLNNSH 81

Query: 58 LVREID 63
          L  ++ 
Sbjct: 82 LFHQMH 87


>gi|288819044|ref|YP_003433392.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
 gi|288788444|dbj|BAI70191.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
 gi|308752627|gb|ADO46110.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
          Length = 346

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          R YDV+V+GGG AG   A   AK G    ++  K      + C
Sbjct: 2  RKYDVLVVGGGPAGSSCAYTLAKSGLKVLVVDFKRKIGTPVQC 44


>gi|260463686|ref|ZP_05811884.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Mesorhizobium opportunistum WSM2075]
 gi|319785172|ref|YP_004144648.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259030540|gb|EEW31818.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Mesorhizobium opportunistum WSM2075]
 gi|317171060|gb|ADV14598.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 395

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 42/195 (21%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGL------GK 55
           + S+D+IV+G G  G   AA  A+     AL+       +     NPA  G         
Sbjct: 7   DYSFDIIVVGAGPVGLSFAASLAQSKLKVALVEAQALERLA----NPAFDGREIALTHAS 62

Query: 56  GHLVREIDALDGLMGRVADAAGIQ-FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
             ++RE+ A D  +   +D + ++  RVLN   G A+R    +A                
Sbjct: 63  IRILRELGAWD--IIPASDKSPLRGARVLNGSSGFALRVDAPRA---------------- 104

Query: 115 ENLDVIQGEVAGFNTEKNIISS-----IVMQDNSMIRCS-TVVLTTGTFLRGVIHIGKLK 168
                  GE  G       I       + M+D   + C  +V+  T +    V+ +    
Sbjct: 105 ------CGEPLGILVPNCRIRDALFKIVRMRDQPELLCGHSVIDATTSHKGAVVRLSDGM 158

Query: 169 IPAGRMGDSPSNSLF 183
             + R+  +  + L 
Sbjct: 159 QLSARLVVAADSRLS 173


>gi|290581094|ref|YP_003485486.1| hypothetical protein SmuNN2025_1568 [Streptococcus mutans NN2025]
 gi|254997993|dbj|BAH88594.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 390

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 123/416 (29%), Gaps = 66/416 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGG AG  A   A   G    L+         +    A  G G+ ++      
Sbjct: 3   HFDTIVIGGGPAGMMACISAGFYGKKALLLEKNK----RLGKKLAGTGGGRCNVTNNGTL 58

Query: 65  LDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQEN 116
            D L      GR   +   QF   ++       G   + +   R   +      I   + 
Sbjct: 59  EDLLAGIPGNGRFLHSVFSQFDNHDIMSFFEDNGVALKVEDHGRVFPKTNKSCTI--IDC 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--------IRCSTVVLTTGTFLRGVIHIGKLK 168
           L+    E+ G    +  I S+  +D             C  +++TTG             
Sbjct: 117 LERKIKELGGLIKTQCEIVSVKKEDGQFIVKSADEAFTCQQLIITTGGKSYPSTGSTGFG 176

Query: 169 IPAGRMGDSPSNSL----FNSFMKFDFDTGRLKTGTPARLDG--KTIIWDKTEKQFADER 222
               +        L          F     +  +     L      I  D     F    
Sbjct: 177 YAIAKHFKLKVTHLEAAESPILTDFPHKALQGISLDDVTLTCGKHQINHDLLFTHFGLSG 236

Query: 223 LIP-----FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                   F    +      +        L+      E    +A+ +   +         
Sbjct: 237 PAALRLSTFIQGGETAYLDLLPQLTKEALLKKIETTREKSLKNALKTFLPERLAAFLSEG 296

Query: 278 IEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRP 337
            + K+ +  +++  +I  + +              ALP  I  +       L K  + + 
Sbjct: 297 YDHKVKQLSKKDLEKILHKIK--------------ALPIPITGKM-----SLAKSFVTKG 337

Query: 338 GYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           G       I+ KE+ P TLE+K ISGL  AG+   IN  TG      A   G  AG
Sbjct: 338 G-------IDLKEINPKTLESKTISGLHFAGEVLDINAHTGGFNITAALCTGWAAG 386


>gi|91978208|ref|YP_570867.1| geranylgeranyl reductase [Rhodopseudomonas palustris BisB5]
 gi|91684664|gb|ABE40966.1| geranylgeranyl reductase [Rhodopseudomonas palustris BisB5]
          Length = 400

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREIDA 64
           YDVIV+GGG +G  AA   A+ G    L        G +  C  AI        +R+   
Sbjct: 8   YDVIVVGGGPSGATAACDLARAGKRVVL----LDRAGRIKPCGGAIPPRA----IRDFAI 59

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            D ++    +AA +          P   G     DRE +   +++ 
Sbjct: 60  PDSMLVAKINAARMVSPSDVEVDMPIGDGFVGMVDREHFDEWLRKR 105


>gi|170768724|ref|ZP_02903177.1| protein FixC homolog [Escherichia albertii TW07627]
 gi|170122272|gb|EDS91203.1| protein FixC homolog [Escherichia albertii TW07627]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHSLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|319757345|gb|ADV69287.1| hypothetical protein SSUJS14_0180 [Streptococcus suis JS14]
          Length = 391

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 128/409 (31%), Gaps = 56/409 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D I+IG G AG  AA  ++  G  T L+         +    +  G G+ ++       D
Sbjct: 5   DTIIIGAGPAGMMAAISSSFYGKKTLLLEKNK----RLGKKLSGTGGGRCNVTNNGTLED 60

Query: 67  GLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQREI 111
            L      GR   +   QF   ++       G + +           DR    +      
Sbjct: 61  LLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGRVFPTTDRSQTIIKCLEMK 120

Query: 112 LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + +  +D+  G EV       ++   +   +  +     +++TTG               
Sbjct: 121 MLENGVDIRTGTEVVSVRKMDDLFH-VKTSE-EVFTAPQLIVTTGG------KTYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  ++  
Sbjct: 173 TGFGHDIA--------RHFKLEVTEIEAAESPVL----TDFPHKKLQGISLDDVTLTYGK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             IT+  +      +     R+    +K       D+          + + + +  E++ 
Sbjct: 221 HVITHDLLFTHFGLSGPAALRL-SSFVKGGETAFLDVLPT--HSDQDLFEHLEKNREKSV 277

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYD 344
                E         +     + + +  Q      +  L+ + I   G        +   
Sbjct: 278 KNTLSELMPDRLADFFAENYDSKVKQVSQKDLTELVSLLKVLPIKITGKMSLAKSFVTKG 337

Query: 345 YINPKELFP-TLETKKISGLFLAGQ---INGTTGYEEAA---AQGLVAG 386
            ++ KE+ P TLE+KK+ GL  AG+   IN  TG        A G VAG
Sbjct: 338 GVDLKEINPKTLESKKVPGLHFAGEVLDINAHTGGFNITYCLATGWVAG 386


>gi|311894420|dbj|BAJ26828.1| hypothetical protein KSE_09920 [Kitasatospora setae KM-6054]
          Length = 455

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 18/186 (9%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREI----- 62
           +VIGGG AGC AA      G +  ++  +       +     +      HL+ E      
Sbjct: 15  VVIGGGLAGCLAAWAL--HGVAERIVVVERDRYPDGVGFRAGVPQARHCHLLLEAGRRTL 72

Query: 63  -DALDGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQAD-------RELYRLAMQREILS 113
            + + G++G +      +  +  V    A     R Q+D       R L   A+ + + +
Sbjct: 73  DELMPGIVGELVADGANRILLGGVSWLTAEGWLARHQSDLAVLICSRPLIDHAVLKRVRA 132

Query: 114 QENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             N++     EV G   +   ++ + +         T    T       I    +   +G
Sbjct: 133 LPNVEFRTATEVTGLLGDGGTVTGVRLVGRGTGNQGTDGRGTDGEPETEIAAELVVDASG 192

Query: 173 RMGDSP 178
           R   +P
Sbjct: 193 RRTRAP 198


>gi|152999691|ref|YP_001365372.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Shewanella baltica OS185]
 gi|151364309|gb|ABS07309.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Shewanella baltica OS185]
          Length = 556

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +++DVIV+G G +G  AA  AA+ GA  A++  +   I     N   G   K      +
Sbjct: 85  TQTFDVIVVGAGASGVPAALSAAENGAKVAVL--QKQAIVVAQGNTGSGIDLKTTPKASV 142

Query: 63  DALDG-LMGRVADAAG 77
           +A+   LM   A    
Sbjct: 143 EAMVSRLMSDSAHRCH 158


>gi|83950445|ref|ZP_00959178.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Roseovarius nubinhibens
          ISM]
 gi|83838344|gb|EAP77640.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Roseovarius nubinhibens
          ISM]
          Length = 462

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIVIGAGPGGYVAAIRCAQLGLKTACVEGR-DTLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAKMGLKGK 75


>gi|323341076|ref|ZP_08081324.1| thioredoxin reductase [Lactobacillus ruminis ATCC 25644]
 gi|323091497|gb|EFZ34121.1| thioredoxin reductase [Lactobacillus ruminis ATCC 25644]
          Length = 308

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVIVIG G  G  AA  A++     A++                          +
Sbjct: 1   MTEKYDVIVIGAGPGGMTAALYASRANLKVAML--------------------------D 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   A+       V N     ++ GP               ++L         
Sbjct: 35  RGIYGGQMNNTAE-------VENYPGFKSIMGPELAKKMYESSTQFGAKLLY-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           G V G   ++N    +   D+       V++ TG+  R +   G+ K   
Sbjct: 80  GSVTGITVDENGTKHVKT-DSDEYEAEAVIIATGSESRKLGVPGEEKYSG 128


>gi|110598296|ref|ZP_01386571.1| geranylgeranyl reductase:Geranylgeranyl reductase, plantal and
           prokaryotic [Chlorobium ferrooxidans DSM 13031]
 gi|110340104|gb|EAT58604.1| geranylgeranyl reductase:Geranylgeranyl reductase, plantal and
           prokaryotic [Chlorobium ferrooxidans DSM 13031]
          Length = 380

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV V+GGG +G  AAA  A+ G ST LI      +        +G + +  +  E+   
Sbjct: 3   YDVAVLGGGPSGSVAAAELARAGLSTILIERNFENVKPCGGAIPLGLIEEFRIPSELVEK 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                +     G    + N+  G      R + DR L   A +
Sbjct: 63  KLSRMKARSPKGRVIEM-NMPNGYVGMVRREKFDRWLRTEAEK 104


>gi|220904470|ref|YP_002479782.1| thioredoxin reductase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219868769|gb|ACL49104.1| thioredoxin reductase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 308

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++YD +VIGGG AG  AA   A+ G S  +
Sbjct: 2  KAYDAVVIGGGPAGVTAALYLARSGCSVLM 31


>gi|15227757|ref|NP_179868.1| SQE2 (squalene epoxidase 2); FAD binding / oxidoreductase/ squalene
           monooxygenase [Arabidopsis thaliana]
 gi|3445200|gb|AAC32430.1| putative squalene epoxidase [Arabidopsis thaliana]
 gi|330252268|gb|AEC07362.1| squalene epoxidase 2 [Arabidopsis thaliana]
          Length = 585

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 124 DVIIVGAGVAGSALAHTLGKEGRRVHVIERDFSEQDRIVGELLQPGGYLKLIELGLEDCV 183

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           ++IDA   ++G V    G   ++    +               +   M+ + L+  N+ +
Sbjct: 184 KKIDAQ-RVLGYVLFKDGKHTKLAYPLETFDSDVAGRSFHNGRFVQRMREKALTLSNVRL 242

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    ++ +  R 
Sbjct: 243 EQGTVTSLLEEHGTIKGVRYRTKEGNEFRS 272


>gi|254509473|ref|ZP_05121540.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
 gi|221533184|gb|EEE36172.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G  AA  AA+LG  TA++       I    G +     +     
Sbjct: 1   MAAQSFDLIVIGAGPGGYVAAIRAAQLGLKTAVVEREHLGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             AD  G     V+   +G A +                  +L +
Sbjct: 61  FHLMERAKDFG----LKADKVGYDLDAVVKRSRGVAAQLSGG-----------IGHLLKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
             + V+ G        K  +S +     +  +    +VL TG   R +
Sbjct: 106 NKVTVVMGAAT--LPSKGKVS-VKTDKGTEELTAKNIVLATGARAREL 150


>gi|221310785|ref|ZP_03592632.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221320028|ref|ZP_03601322.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
          Length = 586

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 179/576 (31%), Gaps = 108/576 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ----INGT-----TG 374
               + I  P  A+ Y      ++  ++        I GLF AG+    ++G      T 
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLERTS 391

Query: 375 YEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLT 416
              A   G+VAG N+ +  N                    +   ++   S  G     + 
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWADIMSMDGTENAYVL 451

Query: 417 SKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
            K + E      +   +    L+ D+    L     K+      +   + A + ++++ +
Sbjct: 452 HKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS 509
             L + + L +     S    +K D   R   E+L 
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLK 547


>gi|253751084|ref|YP_003024225.1| hypothetical protein SSUSC84_0167 [Streptococcus suis SC84]
 gi|253752985|ref|YP_003026125.1| membrane protein [Streptococcus suis P1/7]
 gi|253754808|ref|YP_003027948.1| membrane protein [Streptococcus suis BM407]
 gi|251815373|emb|CAZ50945.1| putative membrane protein [Streptococcus suis SC84]
 gi|251817272|emb|CAZ55001.1| putative membrane protein [Streptococcus suis BM407]
 gi|251819230|emb|CAR44455.1| putative membrane protein [Streptococcus suis P1/7]
 gi|292557633|gb|ADE30634.1| Predicted flavoprotein [Streptococcus suis GZ1]
          Length = 391

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 128/409 (31%), Gaps = 56/409 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D I+IG G AG  AA  ++  G  T L+         +    +  G G+ ++       D
Sbjct: 5   DTIIIGAGPAGMMAAISSSFYGKKTLLLEKNK----RLGKKLSGTGGGRCNVTNNGTLED 60

Query: 67  GLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQREI 111
            L      GR   +   QF   ++       G + +           DR    +      
Sbjct: 61  LLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGRVFPTTDRSQTIIKCLEMK 120

Query: 112 LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           + +  +D+  G EV       ++   +   +  +     +++TTG               
Sbjct: 121 MLENGVDIRTGTEVVSVRKMDDLFH-VKTSE-EVFTAPQLIVTTGG------KTYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  ++  
Sbjct: 173 TGFGHDIA--------RHFKLEVTEIEAAESPVL----TDFPHKKLQGISLDDVTLTYGK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
             IT+  +      +     R+    +K       D+          + + + +  E++ 
Sbjct: 221 HVITHDLLFTHFGLSGPAALRL-SSFVKGGETAFLDVLPT--HSDQDLFEHLEKNREKSV 277

Query: 291 HQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA------IEYD 344
                E         +     + + +  Q      +  L+ + I   G        +   
Sbjct: 278 KNTLSELMPDRLADFFAENYDSKVKQVSQKDLTELVTLLKVLPIKITGKMSLAKSFVTKG 337

Query: 345 YINPKELFP-TLETKKISGLFLAGQ---INGTTGYEEAA---AQGLVAG 386
            ++ KE+ P TLE+KK+ GL  AG+   IN  TG        A G VAG
Sbjct: 338 GVDLKEINPKTLESKKVPGLHFAGEVLDINAHTGGFNITYCLATGWVAG 386


>gi|226324664|ref|ZP_03800182.1| hypothetical protein COPCOM_02449 [Coprococcus comes ATCC 27758]
 gi|225207112|gb|EEG89466.1| hypothetical protein COPCOM_02449 [Coprococcus comes ATCC 27758]
          Length = 666

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKPE 417


>gi|14520939|ref|NP_126414.1| thioredoxin reductase [Pyrococcus abyssi GE5]
 gi|5458156|emb|CAB49645.1| trxB thioredoxin reductase [Pyrococcus abyssi GE5]
          Length = 345

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 56/177 (31%), Gaps = 48/177 (27%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI+IG G AG  AA  AA+ G  T +IT                           
Sbjct: 30  SKVWDVIIIGAGPAGYTAAIYAARFGLDTIIITKDL------------------------ 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G M  + D       + N    P        A R      M   +     +DVI  
Sbjct: 66  ---GGNMA-ITDL------IENYPGFPEGISGSELAKR------MYEHVKKY-GVDVIFD 108

Query: 123 EVAGFN------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           EV   +       E      +   +    +  T+++  G   R  +H+   K   GR
Sbjct: 109 EVVRIDPAECAYYEGPCQFEVKTANGKEYKGKTIIIAVGAEPR-KLHVPGEKEFTGR 164


>gi|254486836|ref|ZP_05100041.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
 gi|214043705|gb|EEB84343.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
          Length = 1005

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG EAA  AA  GA+  L+     T       P  GGL +G  V   D +D
Sbjct: 170 DVLVIGGGVAGLEAARTAALSGATVILLEQ---TAHWGGRAPVDGGLVEGASVT--DYID 224

Query: 67  GLMGRVADAAGIQFRVLNVKKG 88
            L+  ++    +Q R   +  G
Sbjct: 225 ALIAELSAMDNVQMRTRTMGAG 246


>gi|297625726|ref|YP_003687489.1| electron transfer oxidoreductase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921491|emb|CBL56045.1| electron transfer oxidoreductase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 443

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 56/179 (31%), Gaps = 17/179 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G  G   AA  A  G S  L+  K+       C   +       L R      
Sbjct: 32  DVIVVGAGPGGSATAAFCAMRGLSVLLLE-KSQFPREKVCGDGLTPRAVRMLTRLGIDST 90

Query: 67  GLMGRVADAAG---------IQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQE 115
              G   +             +     +   P   +  PR++ D  L   AM+  +    
Sbjct: 91  ETAGWARNKGLRVYGGRTEPFELPWPELADFPDYGLVCPRSRFDDVLAGHAMKLGVTLHT 150

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            ++     V    T  + I  +        R   VV   G   R  + +G+ +  A  M
Sbjct: 151 GVN-----VTEPITADDRIVGVRDNQGREFRAPIVVAADGNSTRLAVAMGRQRDEARPM 204


>gi|328869610|gb|EGG17987.1| hypothetical protein DFA_06653 [Dictyostelium fasciculatum]
          Length = 455

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           + +YDVIV+GGG  G  +A + AK G    L          M  N +  G G+
Sbjct: 55  DETYDVIVVGGGITGTSSAYLLAKSGLKVLL----LEQFEKMHSNGSSHGDGR 103


>gi|256377281|ref|YP_003100941.1| tryptophan halogenase [Actinosynnema mirum DSM 43827]
 gi|255921584|gb|ACU37095.1| tryptophan halogenase [Actinosynnema mirum DSM 43827]
          Length = 441

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-------- 58
           D IV+GGG AG   A+V A+ G S  ++              ++     G L        
Sbjct: 3   DAIVMGGGPAGAVCASVLARQGRSVLVLE--RQEFPRFHIGESMLPYMVGLLERHGLLDA 60

Query: 59  VREIDALDGLMGRVADAAGIQ------FRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           VRE   +    G   D  G +      FR    K G        Q +R  +      +  
Sbjct: 61  VREQGYVVKRGGEFIDPTGTKFFRAGVFRADFAKTGDGRHHETFQVERSHFDRVNLDQAR 120

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTG 155
           +     V +G  V G   E   +  +  ++       R   VV  TG
Sbjct: 121 A-AGATVREGAQVVGLLEEGGRVVGVRYREGGVEREERARYVVDATG 166


>gi|118462836|ref|YP_881975.1| FAD dependent oxidoreductase, putative [Mycobacterium avium 104]
 gi|118164123|gb|ABK65020.1| FAD dependent oxidoreductase, putative [Mycobacterium avium 104]
          Length = 522

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M + +YD IV+G GH G  AAA+  + G  T  +   T
Sbjct: 1  MSDTNYDAIVVGAGHNGLTAAAILQRAGLRTVCLEANT 38


>gi|108803286|ref|YP_643223.1| hypothetical protein Rxyl_0437 [Rubrobacter xylanophilus DSM 9941]
 gi|108764529|gb|ABG03411.1| monooxygenase, FAD-binding protein [Rubrobacter xylanophilus DSM
           9941]
          Length = 423

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+GGG AG   + + A+ G S  L+            +    G      V E+    GL 
Sbjct: 15  VVGGGPAGAMLSLLLARAGVSVTLLEAHPD------FDREFRGDTLHPSVMEVMDQLGLA 68

Query: 70  GRVADAAGIQFR--VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD--------- 118
           GR+ +    + R   L+  KGP      ++ +     + M  +    E L          
Sbjct: 69  GRLLELRHSKVRSFTLDTPKGPFTPVDFSRLNTRFPYITMMPQASFLEFLTAEARRYPGF 128

Query: 119 --VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
             V+   V     E   +  +  +           LT G   RG
Sbjct: 129 RLVMGARVRELVEEGGAVRGVRYESGDGTHEVRASLTVGADGRG 172


>gi|270285678|ref|ZP_06195072.1| succinate dehydrogenase flavoprotein subunit [Chlamydia muridarum
          Nigg]
 gi|270289686|ref|ZP_06195988.1| succinate dehydrogenase flavoprotein subunit [Chlamydia muridarum
          Weiss]
 gi|301337073|ref|ZP_07225275.1| succinate dehydrogenase flavoprotein subunit [Chlamydia muridarum
          MopnTet14]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 1  MMNKPCRVIIIGGGLAGLSAAMQLADRGMLVELFSLTKVKRSHSVCAQG-GINAALNLKD 59

Query: 61 EID 63
          E D
Sbjct: 60 END 62


>gi|218262415|ref|ZP_03476888.1| hypothetical protein PRABACTJOHN_02563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223392|gb|EEC96042.1| hypothetical protein PRABACTJOHN_02563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 621

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 64/175 (36%), Gaps = 25/175 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++V+G G AG  AA  A +LG   ALI  +          P +GG        EI  
Sbjct: 185 EYDLVVVGAGIAGMSAAVSAGRLGCKVALINDR----------PVVGGNNSS----EIRV 230

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
             G  GR+ +    +   L  + GP   G    A+    +  M   +  ++N+ +     
Sbjct: 231 HLG--GRIEEGTYKELGGLQKEFGPEKGGNAQPAEYYEDQKKMDW-LAGEKNVSLFLNYR 287

Query: 124 VAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
             G   E + I+S+V++                  TG    G  ++       GR
Sbjct: 288 AIGVTKEGDKITSVVVKHIENGKELKFEAPLFSDCTGDGTIG--YLAGADYRMGR 340


>gi|332669484|ref|YP_004452492.1| FAD dependent oxidoreductase [Cellulomonas fimi ATCC 484]
 gi|332338522|gb|AEE45105.1| FAD dependent oxidoreductase [Cellulomonas fimi ATCC 484]
          Length = 382

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV+V+G G  G   A   A+ G    L+
Sbjct: 1  MTQDGYDVVVVGAGATGSATAWALARRGRRVLLL 34


>gi|327311919|ref|YP_004338816.1| Thioredoxin-disulfide reductase [Thermoproteus uzoniensis 768-20]
 gi|326948398|gb|AEA13504.1| Thioredoxin-disulfide reductase [Thermoproteus uzoniensis 768-20]
          Length = 321

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          ++  YDVIV+GGG AG  AA  AA+    T +I    
Sbjct: 1  MSADYDVIVVGGGIAGFSAALYAARQRLKTLVIAKDI 37


>gi|291615000|ref|YP_003525157.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sideroxydans lithotrophicus ES-1]
 gi|291585112|gb|ADE12770.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sideroxydans lithotrophicus ES-1]
          Length = 463

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YDV++IG G AG  AA  AA+LG  TA++             P IGG G
Sbjct: 2  DYDVLIIGSGPAGQHAAWQAARLGKRTAIVE----------RKPRIGGAG 41


>gi|149374984|ref|ZP_01892757.1| dihydrolipoamide dehydrogenase [Marinobacter algicola DG893]
 gi|149360873|gb|EDM49324.1| dihydrolipoamide dehydrogenase [Marinobacter algicola DG893]
          Length = 479

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---------MSCNPAIGG 52
          ++  YDVIVIG G  G  AA  AA+LG  TA I   T   G          + C P+   
Sbjct: 1  MSDKYDVIVIGAGPGGYVAAIKAAQLGLKTACIESWTDKEGKNRLGGTCLNVGCIPSKAL 60

Query: 53 LGKGHLVREIDALDGLMGRVADAAG-IQFRVLNVKKG 88
          L   H   E        G +A   G    +++  K+G
Sbjct: 61 LEISHKYEEASHDFAEQGIIAKEVGFDIAKMMKRKEG 97


>gi|13541824|ref|NP_111512.1| geranylgeranyl reductase [Thermoplasma volcanium GSS1]
 gi|74581174|sp|Q979Y7|GGR_THEVO RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|14325261|dbj|BAB60165.1| cofactor biosynthesis protein [Thermoplasma volcanium GSS1]
          Length = 396

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +YDV+VIGGG  G  AA  AAK G  T +I  +      + C     GL KG L
Sbjct: 2  ETYDVLVIGGGPGGSTAARYAAKYGLRTLMIEKRPEIGSPVRCGE---GLSKGIL 53


>gi|148240080|ref|YP_001225467.1| dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7803]
 gi|147848619|emb|CAK24170.1| Dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7803]
          Length = 482

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +DVIVIG G+ G +AA  AA+ G   A+I       G+     C P+   L     VRE
Sbjct: 7   DFDVIVIGAGYGGFDAAKHAAEHGLKVAIIE-SRDMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVK--KGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +   D L G    AA ++F    +       V   R    + L R  +   I  Q  L+ 
Sbjct: 66  LADADHLAGFGIHAAPVRFERQKIADHANQLVATIRGNLTKTLERAGVT-IIRGQGRLES 124

Query: 120 IQGE-VAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTG 155
            Q   V   +    +I+   +++   S       + T G
Sbjct: 125 AQAVGVREISGVDRVITGKDVILATGSDPFVPPGIETDG 163


>gi|145596577|ref|YP_001160874.1| geranylgeranyl reductase [Salinispora tropica CNB-440]
 gi|145305914|gb|ABP56496.1| geranylgeranyl reductase [Salinispora tropica CNB-440]
          Length = 423

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 21/144 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G  G   A   A+ G    L+  KT       C   +       LVR      
Sbjct: 8   DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLVR------ 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG--EV 124
             MG   D +     V N        G R + D          ++ S  N  +++   + 
Sbjct: 61  --MG--VDTSTEAGWVRNRGLRVVGGGLRLELD--------WPDLASFPNYGLVRPRLDF 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCS 148
                ++ +++   ++    +   
Sbjct: 109 DELLAQRAVVAGAELRTGVDVTAP 132


>gi|89094310|ref|ZP_01167251.1| soluble pyridine nucleotide transhydrogenase [Oceanospirillum sp.
           MED92]
 gi|89081369|gb|EAR60600.1| soluble pyridine nucleotide transhydrogenase [Oceanospirillum sp.
           MED92]
          Length = 466

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    YDVIVIG G AG  AA  A+K G   A+I  + +  G+ +    I      H V+
Sbjct: 1   MAVYDYDVIVIGSGPAGEGAAMNASKKGRRVAVIEEQEAVGGNCTHKGTIPSKALRHSVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN-LDV 119
           +I   +             FR +   +  +      +A++ +    + R      N +DV
Sbjct: 61  QIIEFN---------TNPMFRDIGEPRWFSFPKVLKRAEKVMSSQVVLRTNFYARNRIDV 111

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGT 156
             G     + E  I+           +R   +++ TG+
Sbjct: 112 FFGTAEFEDKETVIVRG--TASGDETLRAKNIIIATGS 147


>gi|256423483|ref|YP_003124136.1| monooxygenase FAD-binding [Chitinophaga pinensis DSM 2588]
 gi|256038391|gb|ACU61935.1| monooxygenase FAD-binding [Chitinophaga pinensis DSM 2588]
          Length = 488

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGL----GK 55
            +++DV++IG G AG  AA     LG +  L   +      IG  S +P I  +      
Sbjct: 4   EQTFDVLIIGAGPAGSCAALRLLSLGYNVVLTESEPFPRPQIGE-SLSPGIRNIFDYLNA 62

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           G L+     L  L  +V         V   ++G  V   R Q D++L +LA+ R +
Sbjct: 63  GDLLHTRHYLHQLHAQVIWDTPTPQLVNTAQRGAGVMVDRAQLDQDLLQLAVNRGL 118


>gi|331683206|ref|ZP_08383807.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli H299]
 gi|331079421|gb|EGI50618.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli H299]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H +
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL 55


>gi|153854089|ref|ZP_01995397.1| hypothetical protein DORLON_01388 [Dorea longicatena DSM 13814]
 gi|149753138|gb|EDM63069.1| hypothetical protein DORLON_01388 [Dorea longicatena DSM 13814]
          Length = 468

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
          ++  YDV+VIG G  G  AA  AAKLG  TA+I  + +  T  +  C PA   +    L 
Sbjct: 1  MSGKYDVVVIGAGPGGYVAAIKAAKLGLKTAIIEERRAGGTCLNRGCIPAKAMIHASSLY 60

Query: 60 REIDALDGLMGRVADAAGI 78
          RE+   +      +D    
Sbjct: 61 REMQEAERFGISASDVTYD 79


>gi|144898420|emb|CAM75284.1| HI0933-like protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 361

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV++IG G AG  AA V  + G   A+       + S +      G+G  +L    + 
Sbjct: 14 QYDVVIIGAGPAGLMAAEVLGQSGRRVAVF----DAMPSPARKFLRAGIGGLNLTHS-EP 68

Query: 65 LDGLMGRVADAAGIQFRVLNV 85
           D  +GR  D A +  R L  
Sbjct: 69 FDAFLGRFGDRAAVLARSLRT 89


>gi|319745760|gb|EFV98057.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus agalactiae ATCC
           13813]
          Length = 390

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 134/415 (32%), Gaps = 62/415 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  +   G  T LI         +    A  G G+ ++    +
Sbjct: 2   KHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G   + +   R        R I++  
Sbjct: 58  LDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINA- 116

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI-----P 170
            L+    E+ G       + S+  +        T    T      +I     K       
Sbjct: 117 -LENKIKELGGQIMTDTEVVSVK-KIGDSFYIKT--KDTQFASDKLIVTTGGKSYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  SF  
Sbjct: 173 TGFGHDIA--------RHFKLEVTDMEAAESPLL----TDFPHKKLQGISLDDVTLSFEK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--- 287
             IT+  +      +     RI       S +  G+          S+++    F     
Sbjct: 221 HIITHDLLFTHFGLSGPAALRI------SSFVKGGETIYLDVLPNISVKELETHFQNERE 274

Query: 288 ---RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
              +N  +I L PE       Y   +   + +         I  L+K+ I+  G      
Sbjct: 275 KSLKNALKILL-PE--RLAEFYAEDLPEKVKQVSVKDLEMLIQKLKKLPILVTGKMSLAK 331

Query: 341 --IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
             +    ++ KE+ P TLE+KK++GL  AG+   IN  TG      A   G VAG
Sbjct: 332 SFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|309793467|ref|ZP_07687894.1| FAD dependent oxidoreductase [Escherichia coli MS 145-7]
 gi|308123054|gb|EFO60316.1| FAD dependent oxidoreductase [Escherichia coli MS 145-7]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|300924736|ref|ZP_07140681.1| FAD dependent oxidoreductase [Escherichia coli MS 182-1]
 gi|301327424|ref|ZP_07220663.1| FAD dependent oxidoreductase [Escherichia coli MS 78-1]
 gi|300419085|gb|EFK02396.1| FAD dependent oxidoreductase [Escherichia coli MS 182-1]
 gi|300845996|gb|EFK73756.1| FAD dependent oxidoreductase [Escherichia coli MS 78-1]
 gi|320197882|gb|EFW72490.1| putative electron transfer flavoprotein-quinone oxidoreductase FixC
           [Escherichia coli EC4100B]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|295841391|dbj|BAJ07109.1| succinate dehydrogenase subunit A [Corynespora cassiicola]
          Length = 647

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 77/253 (30%), Gaps = 57/253 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGL-- 53
           +I+  YD +V+G G +G  AA   A+ G +TA    L   ++ T+ +    N A+G +  
Sbjct: 56  VIDHEYDAVVVGAGGSGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAALGNMHE 115

Query: 54  ----------GKG------------------HLVREIDALDGLMGRVAD------AAGIQ 79
                      KG                    V E++       R  D      A G Q
Sbjct: 116 DDWRWHMYDTVKGSDWLGDQDAIHYMTREAPQSVIELENYGCPFSRTDDGRIYQRAFGGQ 175

Query: 80  FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENL-DVIQGEVAGFNTEKNIIS 135
            +     KG         ADR  +  A+   +  Q    N    I+        E  +  
Sbjct: 176 SQ--KYGKGGQAYRCCAAADRTGH--ALLHTLYGQSLRHNTKYFIEFFATDLIMEDGVCK 231

Query: 136 SIVMQDNS-----MIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF 189
            +V  +              VL TG + R            G  M       L N  ++F
Sbjct: 232 GVVAYNQEDGTIHRFLAKNTVLATGGYGRAYFSCTSAHTCTGDGMAMVARAGLPNQDLEF 291

Query: 190 --DFDTGRLKTGT 200
                TG    G 
Sbjct: 292 VQFHPTGIYGAGC 304


>gi|260868189|ref|YP_003234591.1| putative oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|257764545|dbj|BAI36040.1| predicted oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|323181017|gb|EFZ66555.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Escherichia coli 1180]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|260855522|ref|YP_003229413.1| putative oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|257754171|dbj|BAI25673.1| predicted oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|323153065|gb|EFZ39334.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Escherichia coli EPECa14]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|218554267|ref|YP_002387180.1| hypothetical protein ECIAI1_1753 [Escherichia coli IAI1]
 gi|218361035|emb|CAQ98610.1| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
           [Escherichia coli IAI1]
 gi|324119184|gb|EGC13072.1| FAD dependent oxidoreductase [Escherichia coli E1167]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|218695261|ref|YP_002402928.1| hypothetical protein EC55989_1867 [Escherichia coli 55989]
 gi|256018107|ref|ZP_05431972.1| hypothetical protein ShiD9_04278 [Shigella sp. D9]
 gi|293446073|ref|ZP_06662495.1| oxidoreductase FixC [Escherichia coli B088]
 gi|332279151|ref|ZP_08391564.1| oxidoreductase, FAD/NAD(P)-binding domain-containing protein
           [Shigella sp. D9]
 gi|218351993|emb|CAU97725.1| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
           [Escherichia coli 55989]
 gi|291322903|gb|EFE62331.1| oxidoreductase FixC [Escherichia coli B088]
 gi|323186154|gb|EFZ71509.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Escherichia coli 1357]
 gi|332101503|gb|EGJ04849.1| oxidoreductase, FAD/NAD(P)-binding domain-containing protein
           [Shigella sp. D9]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|209919014|ref|YP_002293098.1| hypothetical protein ECSE_1823 [Escherichia coli SE11]
 gi|300818337|ref|ZP_07098547.1| FAD dependent oxidoreductase [Escherichia coli MS 107-1]
 gi|331668385|ref|ZP_08369233.1| putative electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli TA271]
 gi|209912273|dbj|BAG77347.1| putative flavoprotein FixC [Escherichia coli SE11]
 gi|300528977|gb|EFK50039.1| FAD dependent oxidoreductase [Escherichia coli MS 107-1]
 gi|323948110|gb|EGB44101.1| FAD dependent oxidoreductase [Escherichia coli H120]
 gi|324016502|gb|EGB85721.1| FAD dependent oxidoreductase [Escherichia coli MS 117-3]
 gi|331063579|gb|EGI35490.1| putative electron transfer flavoprotein-quinone oxidoreductase YdiS
           [Escherichia coli TA271]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|191167840|ref|ZP_03029645.1| protein FixC homolog [Escherichia coli B7A]
 gi|193065290|ref|ZP_03046362.1| protein FixC homolog [Escherichia coli E22]
 gi|194429498|ref|ZP_03062020.1| protein FixC homolog [Escherichia coli B171]
 gi|260844004|ref|YP_003221782.1| putative oxidoreductase [Escherichia coli O103:H2 str. 12009]
 gi|307310730|ref|ZP_07590376.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia coli
           W]
 gi|190902099|gb|EDV61843.1| protein FixC homolog [Escherichia coli B7A]
 gi|192927084|gb|EDV81706.1| protein FixC homolog [Escherichia coli E22]
 gi|194412462|gb|EDX28762.1| protein FixC homolog [Escherichia coli B171]
 gi|257759151|dbj|BAI30648.1| predicted oxidoreductase [Escherichia coli O103:H2 str. 12009]
 gi|306908908|gb|EFN39404.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia coli
           W]
 gi|315061004|gb|ADT75331.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Escherichia coli W]
 gi|323163451|gb|EFZ49277.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Escherichia coli E128010]
 gi|323378424|gb|ADX50692.1| Electron-transferring-flavoprotein dehydrogenase [Escherichia coli
           KO11]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|116629953|ref|YP_815125.1| thioredoxin reductase [Lactobacillus gasseri ATCC 33323]
 gi|238854083|ref|ZP_04644433.1| thioredoxin-disulfide reductase [Lactobacillus gasseri 202-4]
 gi|282851446|ref|ZP_06260811.1| thioredoxin-disulfide reductase [Lactobacillus gasseri 224-1]
 gi|311110415|ref|ZP_07711812.1| thioredoxin-disulfide reductase [Lactobacillus gasseri MV-22]
 gi|116095535|gb|ABJ60687.1| Thioredoxin reductase [Lactobacillus gasseri ATCC 33323]
 gi|238833317|gb|EEQ25604.1| thioredoxin-disulfide reductase [Lactobacillus gasseri 202-4]
 gi|282557414|gb|EFB63011.1| thioredoxin-disulfide reductase [Lactobacillus gasseri 224-1]
 gi|311065569|gb|EFQ45909.1| thioredoxin-disulfide reductase [Lactobacillus gasseri MV-22]
          Length = 311

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 31/235 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVIVIG G  G  AA  AA+      ++       G    N A      G +  +  
Sbjct: 5   KNYDVIVIGAGPGGLTAALYAARANLKVVIL--DRGIYGGQMNNTAGIDNYPGFVDIQGP 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L   M + A  AG +F   +V+K                       I    N  +I+  
Sbjct: 63  ELGEKMYQTAMNAGAEFAYGDVQK-----------------------IEQDGNQKIIKT- 98

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
               ++ +   +++V+   ++ +   V        +GV +         R  D       
Sbjct: 99  ----DSGEYEAAAVVIATGAVHKHLGVAGEEEYAGKGVSYCAVCDAAFFRDEDVAVIGGG 154

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
           +S ++      +        +  +  +  K E Q          F+ +  T   +
Sbjct: 155 DSAIQEGLYLAQSAKSVT-VIHRRDQLRAKAELQKKAFENDKMKFIWNAQTEEIV 208


>gi|120556394|ref|YP_960745.1| dihydrolipoamide dehydrogenase [Marinobacter aquaeolei VT8]
 gi|120326243|gb|ABM20558.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Marinobacter aquaeolei VT8]
          Length = 479

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLG 54
           M  R  DV VIG G AG   A   A+      ++          + +G M     I    
Sbjct: 1   MDKREVDVAVIGAGTAGM-VAYQRARRATDRIVLIEGDQYGTTCARVGCMPSKLLIAAAE 59

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           + H VR+ DA   L G V               GPAV   R + +R+ +   + R + S 
Sbjct: 60  RAHQVRQADAFGVLPGDV------------RIDGPAVMA-RVREERDRFVAPVVRSMESL 106

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                + G     +  + ++      D++ +    +V+ TG+
Sbjct: 107 PQEHRLMGHARFVDIHRLVVG-----DHTEVTAGRIVIATGS 143


>gi|319941691|ref|ZP_08016014.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804812|gb|EFW01674.1| radical SAM domain-containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 516

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 42/185 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI-GGLGKGHLVR 60
            +  YDV++IG G AG   A  A + G    +       +  +  N AI GG     +  
Sbjct: 40  YDEEYDVVIIGSGFAGMACALKAGRAGKKVLM----LEKMPVVGGNSAICGGNVACPVNP 95

Query: 61  EIDALD----------------------GLMGRVADAAGIQFR---------VLNVKKGP 89
              A                         L+ ++ D      +         V N     
Sbjct: 96  VQKAQGIKDSRELFIADCLKDGLGLNHVELLSKIVDRCNDTIKFVEDCGAEFVPNHMLFE 155

Query: 90  AVRG-PRTQADR----ELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNS 143
                PR+   +      Y   M  +I    N+ V  + +   F  + + +  +  ++  
Sbjct: 156 GGHSVPRSYEIKAGTGSGYIHPMYDQIKKLSNVTVKTRAKFDDFIMDGDAVVGVTYREGY 215

Query: 144 MIRCS 148
                
Sbjct: 216 RFNAK 220


>gi|296273894|ref|YP_003656525.1| hypothetical protein Arnit_2367 [Arcobacter nitrofigilis DSM 7299]
 gi|296098068|gb|ADG94018.1| HI0933 family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 412

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG  A   AA+ G S  L+  +   +G         G G+ +L   +D
Sbjct: 2   KTYDLIVIGSGAAGMIAGIKAARAGKSVLLLEQQ-EKLGP---KLKATGGGRCNLTNTLD 57

Query: 64  ALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQREI 111
            +D     G  GR    A   F   ++       G  T                 + + +
Sbjct: 58  NIDFMNSFGRNGRFMMEAINSFDYKDLMNFFKEIGVETHIPDGFRVFPITHSSSTIIKAL 117

Query: 112 LSQ---ENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +     ++V           E  +I  +   D        VV+ TG
Sbjct: 118 EDELIRVGVEVRCNTKAETLLYEDEVIVGVETLD-EKFLSPNVVVATG 164


>gi|226323770|ref|ZP_03799288.1| hypothetical protein COPCOM_01545 [Coprococcus comes ATCC 27758]
 gi|225207954|gb|EEG90308.1| hypothetical protein COPCOM_01545 [Coprococcus comes ATCC 27758]
          Length = 86

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          ++  +DV+VIG G  G  AA  +AKLG  TA+I  +    T  +  C PA   +    L 
Sbjct: 1  MSEKFDVVVIGAGPGGYVAAIKSAKLGMKTAVIEEREVGGTCLNRGCIPAKAMIHASTLY 60

Query: 60 REIDALDGLMGRVADAAGI 78
          REI   D      +D    
Sbjct: 61 REIKEADRFGISASDVTYD 79


>gi|331004851|ref|ZP_08328268.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [gamma proteobacterium IMCC1989]
 gi|330421305|gb|EGG95554.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [gamma proteobacterium IMCC1989]
          Length = 483

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          ++  YDVIVIG G AG  AA  AA+LG  TA +   +   G +
Sbjct: 1  MSEKYDVIVIGSGPAGYVAAIRAAQLGLKTACVEKWSDDKGKV 43


>gi|319654263|ref|ZP_08008351.1| alkyl hydroperoxide reductase [Bacillus sp. 2_A_57_CT2]
 gi|317393963|gb|EFV74713.1| alkyl hydroperoxide reductase [Bacillus sp. 2_A_57_CT2]
          Length = 509

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T ++ 
Sbjct: 209 YDVLVIGGGPAGSSAAIYAARKGIRTGIVA 238


>gi|222153848|ref|YP_002563025.1| NADH dehydrogenase [Streptococcus uberis 0140J]
 gi|222114661|emb|CAR43720.1| NADH dehydrogenase [Streptococcus uberis 0140J]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +YDV+VIGGG AG  AA  AA+ G  T LI 
Sbjct: 208 TYDVLVIGGGPAGNSAAIYAARKGLKTGLIA 238


>gi|18977794|ref|NP_579151.1| thioredoxin reductase [Pyrococcus furiosus DSM 3638]
 gi|18893541|gb|AAL81546.1| thioredoxin reductase [Pyrococcus furiosus DSM 3638]
          Length = 356

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 48/177 (27%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DVI+IG G AG  AA  AA+ G  T +IT                           
Sbjct: 41  SKVWDVIIIGAGPAGYTAAIYAARFGLDTLIITKDL------------------------ 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G M            ++    G        +  + +Y    +        +DVI  
Sbjct: 77  ---GGNMALT--------DLIENYPGFPEGISGAELSKRMYEQVRKY------GVDVIFD 119

Query: 123 EVAGFN------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           EV   +       E     +I   +    +  TV++  G   R  +++   K   GR
Sbjct: 120 EVVRIDPAECAYYEGPCKFTIKTANGMEYKSRTVIIAVGAEPR-KLNVPGEKEFTGR 175


>gi|312136785|ref|YP_004004122.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methanothermus fervidus DSM 2088]
 gi|311224504|gb|ADP77360.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methanothermus fervidus DSM 2088]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG---GLGKGHLVREIDA 64
           V+++GGG AGC AA VA+KLGA   LI  K+ T+  + C  A G     G+    +E++ 
Sbjct: 4   VVIVGGGWAGCTAAFVASKLGAEVTLIE-KSDTL--LGCGLAAGITENNGRYTATKELEY 60

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGE 123
           L    G + D       V      P     +   D       +++ + +   NL      
Sbjct: 61  LG--CGELLD-TINNATVHESVDLPGHHHTKL-YDPVKVEPQIRKILKNMGVNLYFRCR- 115

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                 E   I+ +++ +   I     V  TG+
Sbjct: 116 ADDVVVENKKINEVILSNEMSIDGDVFVDATGS 148


>gi|313673088|ref|YP_004051199.1| l-aspartate oxidase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939844|gb|ADR19036.1| L-aspartate oxidase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 519

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 42/211 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG---- 56
           M   SYD +V+G G AG  AA   ++ G S A+IT     +G  S   A GG+       
Sbjct: 1   MKKASYDYLVLGSGVAGLRAALELSRHG-SVAIITKSI--LGEGSTEYAQGGVAVVLSDD 57

Query: 57  -----HLVREIDALDGLMGRVA----------------------DAAGIQFRVLNVKKGP 89
                H    I+A DGL  + A                      D  G  F         
Sbjct: 58  DDIFLHYEDTINAGDGLCDKNAVLTLVEEGPKYIRELISYGAKFDMHGEHFDFTREAAHS 117

Query: 90  AVRGPRTQADRELY--RLAMQREILSQENLDVIQGE-VAGFNTEKNIISSI-----VMQD 141
             R    + D   +     ++  +    N+D +    V    T+ N +  +     +  +
Sbjct: 118 VNRIIHARGDATGHEIVRTLKEAVNKITNIDKLDNHFVVDLITKDNKVYGVFVINEINNE 177

Query: 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     V+L TG   R        ++  G
Sbjct: 178 PEVYYSKAVILATGGAGRIFKRTTNPEVSTG 208


>gi|296243023|ref|YP_003650510.1| thioredoxin reductase [Thermosphaera aggregans DSM 11486]
 gi|296095607|gb|ADG91558.1| thioredoxin reductase (NADPH) [Thermosphaera aggregans DSM 11486]
          Length = 340

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          I   Y+ IV+GGG AG  AA  +A+ G  T L+T
Sbjct: 19 IEDRYETIVVGGGPAGLTAALYSARYGHKTLLVT 52


>gi|94987527|ref|YP_595460.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Lawsonia
          intracellularis PHE/MN1-00]
 gi|94731776|emb|CAJ55139.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Lawsonia
          intracellularis PHE/MN1-00]
          Length = 417

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +NR  D+IV+GGG +G  AAA AA+ G    LIT
Sbjct: 1  MNRKVDLIVVGGGLSGMTAAAFAARKGKKCILIT 34


>gi|323701542|ref|ZP_08113215.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533551|gb|EGB23417.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfotomaculum nigrificans DSM 574]
          Length = 425

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M+ +  DV+VIG G +G  AAA AA+ G    ++ 
Sbjct: 1  MMQKKTDVLVIGAGLSGLMAAAQAAEQGKQVLVVA 35


>gi|189207398|ref|XP_001940033.1| monoxygenase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976126|gb|EDU42752.1| monoxygenase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 426

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 20/215 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVR---EI 62
           VI++G G AG  AA   ++ G +  L+        I       +    G  H  R    I
Sbjct: 14  VILVGAGFAGLSAAIECSRKGHTVVLLDKAASPDEITQFGDIISFDPNGARHFERWPGVI 73

Query: 63  DALDGLMGRVADAAGIQFR---VLNVK-KGPAVRGPRTQADR-ELYRLAMQREILSQENL 117
           +A+  +  +        ++   V     +G    GPR    R EL+ +     +     +
Sbjct: 74  EAMKKVARKTTWLDFYHWKGEFVTRQSFEGEQEWGPRINGHRGELWNIIYGHAVER--GV 131

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV---IHIGKLKIPAG-- 172
           +V  G       E    + +V+ D   I    VV   G   R     +        +G  
Sbjct: 132 EVRWGSRVSDYFEDEEKAGVVV-DGKEIIADVVVAAEGVRSRSRKIVLGFDDKPKSSGYA 190

Query: 173 --RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205
             R   S      N  +K   D           L 
Sbjct: 191 VYRSWFSGDAIRSNPTLKHLVDGDSHSGFIGPDLH 225


>gi|212530712|ref|XP_002145513.1| squalene  monooxygenase Erg1 [Penicillium marneffei ATCC 18224]
 gi|210074911|gb|EEA28998.1| squalene monooxygenase Erg1 [Penicillium marneffei ATCC 18224]
          Length = 493

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 18/173 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREID 63
           DV++IG G AGC  A    K G    L+         I  +      GG+     +  +D
Sbjct: 45  DVLIIGAGVAGCALAVALGKQGRKVTLLERSLKEPDRI--VGELLQPGGVQALEQLGLLD 102

Query: 64  ALDGLMGRVADAAGIQFR--------VLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            L+G+     D   + F           +   G   +G      R  + + ++       
Sbjct: 103 CLEGIDAIEVDGYDVIFHGTEVEIPYPADKATGVIPQGRSFHHGR--FIMKLREAARETP 160

Query: 116 NLDVIQGEVAGFNTEKNIISSIV-MQDNS--MIRCSTVVLTTGTFLRGVIHIG 165
           N+ +++          + +       D    +      ++  G   +      
Sbjct: 161 NVTIVEATATNLVKSHSDVIGAEATVDGRPDLFLAPLTIVADGYASKFRKDYH 213


>gi|90417069|ref|ZP_01224997.1| Aminomethyltransferase [marine gamma proteobacterium HTCC2207]
 gi|90331085|gb|EAS46341.1| Aminomethyltransferase [marine gamma proteobacterium HTCC2207]
          Length = 975

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV VIG G AG  AA  AAK G    L+    S  GS++ +       +G   RE+ 
Sbjct: 165 QFYDVAVIGAGPAGLSAALEAAKSGGEVLLVDENASLGGSLNYSRL---DAEGTAARELR 221


>gi|332884706|gb|EGK04963.1| alkyl hydroperoxide reductase, F subunit [Dysgonomonas mossii DSM
           22836]
          Length = 516

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R YDV VIGGG AG  A+  +A+ G   AL+ 
Sbjct: 211 REYDVAVIGGGPAGVAASIYSARKGLKVALLA 242



 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI----THKTSTI 41
           DV V+GGG++G EAA   A +     L       K   I
Sbjct: 354 DVAVVGGGNSGVEAAIDLAGICTKVTLFEYAEELKADKI 392


>gi|99080937|ref|YP_613091.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
 gi|99037217|gb|ABF63829.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
          Length = 464

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M   SYDVIVIG G  G  AA  A++LG  T ++      +G +     C P    L   
Sbjct: 1   MAAASYDVIVIGAGPGGYVAAIRASQLGLKTCVVE--REHLGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   ++       +  +       V+   +G A +                + +L +  
Sbjct: 59  EVFHLMERAKDFGLKAENIGYDLGAVVKRSRGVAKQLSSG-----------VKGLLKKHK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           +DVI GE       K  ++ +     S  +    ++L TG   R +
Sbjct: 108 IDVIMGEAT--LPAKGKVA-VKTDKGSEELTGKNIILATGARAREL 150


>gi|259419306|ref|ZP_05743223.1| dihydrolipoyl dehydrogenase [Silicibacter sp. TrichCH4B]
 gi|259345528|gb|EEW57382.1| dihydrolipoyl dehydrogenase [Silicibacter sp. TrichCH4B]
          Length = 464

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M   SYDVIVIG G  G  AA  AA+LG  T ++       I    G +     +     
Sbjct: 1   MAAASYDVIVIGAGPGGYVAAIRAAQLGLKTCVVEREHLGGICLNWGCIPTKALLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             AD  G     V+   +G A +                + +L +
Sbjct: 61  FHLMERAKDFG----LKADNIGYDLNAVVKRSRGVAKQLSAG-----------VKGLLKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
             +DV+ G        K  +  +     +  +    +++ TG   R +
Sbjct: 106 HKIDVVMGAAT--IPAKGKVL-VKTDKGTEELTGKNIIVATGARAREL 150


>gi|325693791|gb|EGD35710.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK150]
          Length = 391

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KYFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + +    DR        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHDRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           E L+    E+ G       I S+   DN            C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKNDNLFTIRSSDHTWTCQKLIVTTG 163


>gi|300821428|ref|ZP_07101575.1| FAD dependent oxidoreductase [Escherichia coli MS 119-7]
 gi|331677572|ref|ZP_08378247.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli H591]
 gi|300525931|gb|EFK47000.1| FAD dependent oxidoreductase [Escherichia coli MS 119-7]
 gi|331074032|gb|EGI45352.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli H591]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSEDKFDAIVVGAGVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|190891671|ref|YP_001978213.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Rhizobium etli CIAT 652]
 gi|190696950|gb|ACE91035.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase protein
           [Rhizobium etli CIAT 652]
          Length = 403

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH---KTSTIGSMSCNPAIGGLGKGHLVR 60
           +++++ VIGGG AG  AA   A+ G + AL+     +     +   + +I  L +  L  
Sbjct: 2   KTFEIAVIGGGLAGMIAAIALARGGRNVALVAPLSTREDRRTTALMDQSIRFLDRLTLWD 61

Query: 61  EIDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----Q 114
           ++      +   R+ D      R        A  G            A+   +      +
Sbjct: 62  KLRPAAAPLTSMRIIDGTDRLLRAPTTTFRAAEVGLDA-FGYNFPNKALTDILEHATAGE 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            N+                +S I +     +     V   G
Sbjct: 121 GNISRFTDMAESIEISAERVS-ITLAGGETLAADFAVGADG 160


>gi|89897852|ref|YP_514962.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila felis
           Fe/C-56]
 gi|89331224|dbj|BAE80817.1| subunit of succinate dehydrogenase [Chlamydophila felis Fe/C-56]
          Length = 627

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 92/316 (29%), Gaps = 49/316 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE------ 61
           VIV+GGG AG  AA   A  G    L++          C    G     +L  E      
Sbjct: 8   VIVVGGGLAGLSAAMKLADYGIVVDLVSLTKVKRSHSVCAQG-GINAALNLKHEEEDSPY 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I A D + G   D    Q  VL +    A R  R     + +     R      NLDV +
Sbjct: 67  IHAYDTIKG--GDFLADQPPVLEMC-LAAPRIIRML---DNFGCPFNRT--PNGNLDVRR 118

Query: 122 GEVAGFNTEKNIISSIVMQDNSMI------RCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
               G    + +          M       R          F      +  +   +GR  
Sbjct: 119 F--GGTLYHRTVFCGASTGQQLMYTLDEQVRRRESQERVNKFENHE-FVRLITNSSGRTC 175

Query: 176 DSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
                +LF N       D     TG P  +   +                   F T    
Sbjct: 176 GIVMMNLFNNRLEVLKGDAVIFATGGPGVIFKMSTNST---------------FCTGAAN 220

Query: 235 NRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIEDKIVRFGERNG 290
            R    G+T  N E  +I    +  I    + S  ++  G R + P    K + F + + 
Sbjct: 221 GRLFLQGMTYANPEFIQIHPTAIPGIDKLRLISESVRGEGGRVWVPGDSSKTITFPDGSQ 280

Query: 291 HQIFLEPEGLNTDVVY 306
                 P G   +  Y
Sbjct: 281 -----RPCGKTGEPWY 291


>gi|328951526|ref|YP_004368861.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Marinithermus hydrothermalis DSM 14884]
 gi|328451850|gb|AEB12751.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Marinithermus hydrothermalis DSM 14884]
          Length = 182

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          +D IV+GGG AG  AA   A+ G    +I  + S +  +   P   GL +   
Sbjct: 3  HDAIVVGGGPAGLSAALFLARAGLKVLVIDGEQSALREVPRVPNYPGLPEAPS 55


>gi|297748722|gb|ADI51268.1| Succinate dehydrogenase flavoprotein subunit [Chlamydia trachomatis
           D-EC]
 gi|297749602|gb|ADI52280.1| Succinate dehydrogenase flavoprotein subunit [Chlamydia trachomatis
           D-LC]
          Length = 617

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 45  MMNQRCRVIIIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQG-GINAALNLKG 103

Query: 61  EID 63
           E D
Sbjct: 104 END 106


>gi|255311412|ref|ZP_05353982.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis 6276]
 gi|255317713|ref|ZP_05358959.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis 6276s]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 1  MMNQRCRVIIIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQG-GINAALNLKG 59

Query: 61 EID 63
          E D
Sbjct: 60 END 62


>gi|166154807|ref|YP_001654925.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis 434/Bu]
 gi|166155682|ref|YP_001653937.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis L2b/UCH-1/proctitis]
 gi|301336083|ref|ZP_07224327.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis L2tet1]
 gi|165930795|emb|CAP04292.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis 434/Bu]
 gi|165931670|emb|CAP07246.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis L2b/UCH-1/proctitis]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 1  MMNQRCRVIIIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQG-GINAALNLKG 59

Query: 61 EID 63
          E D
Sbjct: 60 END 62


>gi|76789329|ref|YP_328415.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis A/HAR-13]
 gi|237803021|ref|YP_002888215.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis B/Jali20/OT]
 gi|76167859|gb|AAX50867.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis A/HAR-13]
 gi|231274255|emb|CAX11049.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis B/Jali20/OT]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 1  MMNQRCRVIIIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQG-GINAALNLKG 59

Query: 61 EID 63
          E D
Sbjct: 60 END 62


>gi|15605321|ref|NP_220107.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis D/UW-3/CX]
 gi|3329036|gb|AAC68194.1| Succinate Dehydrogenase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436126|gb|ADH18300.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis G/9768]
 gi|296437986|gb|ADH20147.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis G/11074]
 gi|297140488|gb|ADH97246.1| succinate dehydrogenase flavoprotein subunit [Chlamydia
          trachomatis G/9301]
          Length = 573

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  
Sbjct: 1  MMNQRCRVIIIGGGLAGLSAAMQLADRGILVELFSLTKVKRSHSVCAQG-GINAALNLKG 59

Query: 61 EID 63
          E D
Sbjct: 60 END 62


>gi|309777637|ref|ZP_07672587.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914541|gb|EFP60331.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 306

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 43/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R YD+I+IG G AG  AA   ++ G  TA++                          E
Sbjct: 1   MERRYDLIIIGAGPAGMSAAIYGSRAGLKTAML--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           + A  G + + A+ +       N        G +  +D   +  +   E L         
Sbjct: 35  MGAPGGKLIKTAEIS-------NWPGIIETNGAKLASDMFEHSTSFGAEYLY-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G V     E      I+ +D +      +++ TGT
Sbjct: 80  GNV--IRVEDGEYKKIICEDGTQYEARAIIVATGT 112


>gi|76787111|ref|YP_330372.1| hypothetical protein SAK_1775 [Streptococcus agalactiae A909]
 gi|77406192|ref|ZP_00783262.1| conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           H36B]
 gi|77412343|ref|ZP_00788655.1| conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           CJB111]
 gi|76562168|gb|ABA44752.1| conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           A909]
 gi|77161599|gb|EAO72598.1| conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           CJB111]
 gi|77175186|gb|EAO77985.1| conserved hypothetical protein TIGR00275 [Streptococcus agalactiae
           H36B]
          Length = 390

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 134/415 (32%), Gaps = 62/415 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IGGG AG  AA  +   G  T LI         +    A  G G+ ++    +
Sbjct: 2   KHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             + L      GR   +   QF   ++       G   + +   R        R I++  
Sbjct: 58  LDELLAGIPGNGRFLYSVFSQFDNHDIINFFQDNGVTLKEEDHGRMFPTTDKSRTIINA- 116

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI-----P 170
            L+    E+ G       + S+  +        T    T      ++     K       
Sbjct: 117 -LENKIKELGGQIMTDTEVVSVK-KIGDSFYIKT--KDTQFASDKLVVTTGGKSYPSTGS 172

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
            G   D            F  +   ++      L      +   + Q      +  SF  
Sbjct: 173 TGFGHDIA--------RHFKLEVTDMEAAESPLL----TDFPHKKLQGISLDDVTLSFEK 220

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--- 287
             IT+  +      +     RI       S +  G+          S+++    F     
Sbjct: 221 HIITHDLLFTHFGLSGPAALRI------SSFVKGGETIYLDVLPNISVKELETHFQNERE 274

Query: 288 ---RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA---- 340
              +N  +I L PE       Y   +   + +         I  L+K+ I+  G      
Sbjct: 275 KSLKNALKILL-PE--RLAEFYAEDLPEKVKQVSVKDLETLIQKLKKLPILVTGKMSLAK 331

Query: 341 --IEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
             +    ++ KE+ P TLE+KK++GL  AG+   IN  TG      A   G VAG
Sbjct: 332 SFVTKGGVDLKEINPKTLESKKVAGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|319780018|ref|YP_004139494.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317165906|gb|ADV09444.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 89/268 (33%), Gaps = 28/268 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREID 63
           Y+++VIG G AG  AA  AA LGA  ALI       T  ++ C P+   +    L  ++ 
Sbjct: 38  YNLVVIGAGPAGLTAAYEAAGLGAKVALIERNLIGGTCVNVGCIPSKSIIRTARLYADMR 97

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
             +   G + D   + F              R +  R+    A   + L  E +D+  GE
Sbjct: 98  DAENFGGDMPDRLHVDF---------PRAMTRMRQIRQRISRADAADRLVSEGIDLYFGE 148

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                +  + +          +R    ++ TG   R  +        AG + +     L 
Sbjct: 149 A--LFSGPDAV----TVAGQTLRFRKALIATGA--RPRLPTIPGLAEAGYLSNETMFELT 200

Query: 184 NSFMKFDFDTGRLKTGTPA-----RLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
               +     G    G  A      L  K I+  +       E       ++D +    +
Sbjct: 201 ECPKRL-LVIGGGPLGCEAAQAFCLLGAKVILAQREPMFLPGEERDAAQILSDALAREGV 259

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGD 266
           E    R N E   +  E  K  A    D
Sbjct: 260 E---VRLNTEVVAVRTEGGKKLADLVCD 284


>gi|163744287|ref|ZP_02151647.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
 gi|161381105|gb|EDQ05514.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
          Length = 462

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIVIGSGPGGYVAAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EIDALDGLMGRVADAAGIQFR 81
          E +   G MG   DA  + ++
Sbjct: 62 EAEHNFGEMGLKGDAPSVDWK 82


>gi|322374176|ref|ZP_08048709.1| alkyl hydroperoxide reductase, F subunit [Streptococcus sp. C150]
 gi|321276881|gb|EFX53953.1| alkyl hydroperoxide reductase, F subunit [Streptococcus sp. C150]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|291548100|emb|CBL21208.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Ruminococcus
           sp. SR1/5]
          Length = 665

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +N++ +V+VIGGG AG EAA  AA++G +T L+
Sbjct: 380 VNKNCNVVVIGGGTAGLEAACTAAEVGCNTFLL 412


>gi|228477806|ref|ZP_04062434.1| alkyl hydroperoxide reductase, F subunit [Streptococcus salivarius
           SK126]
 gi|228250498|gb|EEK09712.1| alkyl hydroperoxide reductase, F subunit [Streptococcus salivarius
           SK126]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|139474527|ref|YP_001129243.1| NADH dehydrogenase [Streptococcus pyogenes str. Manfredo]
 gi|134272774|emb|CAM31049.1| NADH dehydrogenase [Streptococcus pyogenes str. Manfredo]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|94991344|ref|YP_599444.1| peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS10270]
 gi|94544852|gb|ABF34900.1| Peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS10270]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|94995257|ref|YP_603355.1| Peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS10750]
 gi|94548765|gb|ABF38811.1| Peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS10750]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|71904415|ref|YP_281218.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes MGAS6180]
 gi|71803510|gb|AAX72863.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes MGAS6180]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|19746953|ref|NP_608089.1| NADH oxidase/alkyl hydroperoxidase reductase [Streptococcus
           pyogenes MGAS8232]
 gi|50915112|ref|YP_061084.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes
           MGAS10394]
 gi|94989409|ref|YP_597510.1| NADH oxidase H2O2-forming [Streptococcus pyogenes MGAS9429]
 gi|94993299|ref|YP_601398.1| peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS2096]
 gi|19749204|gb|AAL98588.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus pyogenes MGAS8232]
 gi|50904186|gb|AAT87901.1| Peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes
           MGAS10394]
 gi|94542917|gb|ABF32966.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes MGAS9429]
 gi|94546807|gb|ABF36854.1| Peroxiredoxin reductase (NAD(P)H) / NADH oxidase H2O2-forming
           [Streptococcus pyogenes MGAS2096]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|15675838|ref|NP_270012.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus pyogenes M1 GAS]
 gi|71911582|ref|YP_283132.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes MGAS5005]
 gi|209560196|ref|YP_002286668.1| Alkyl hydroperoxide reductase protein F [Streptococcus pyogenes
           NZ131]
 gi|306826511|ref|ZP_07459821.1| alkyl hydroperoxide reductase [Streptococcus pyogenes ATCC 10782]
 gi|13623069|gb|AAK34733.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus pyogenes M1 GAS]
 gi|71854364|gb|AAZ52387.1| peroxiredoxin reductase (NAD(P)H) [Streptococcus pyogenes MGAS5005]
 gi|209541397|gb|ACI61973.1| Alkyl hydroperoxide reductase protein F [Streptococcus pyogenes
           NZ131]
 gi|304431298|gb|EFM34297.1| alkyl hydroperoxide reductase [Streptococcus pyogenes ATCC 10782]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|21911307|ref|NP_665575.1| putative NADH oxidase/alkyl hydroperoxidase [Streptococcus pyogenes
           MGAS315]
 gi|28896680|ref|NP_803030.1| NADH oxidase/alkyl hydroperoxidase reductase [Streptococcus
           pyogenes SSI-1]
 gi|21905521|gb|AAM80378.1| putative NADH oxidase/alkyl hydroperoxidase [Streptococcus pyogenes
           MGAS315]
 gi|28811934|dbj|BAC64863.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus pyogenes SSI-1]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|254796821|ref|YP_003081658.1| dihydrolipoyl dehydrogenase [Neorickettsia risticii str.
          Illinois]
 gi|254590068|gb|ACT69430.1| dihydrolipoyl dehydrogenase [Neorickettsia risticii str.
          Illinois]
          Length = 457

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLVR 60
          YDVIV+GGG AG  AA  A++ G   AL+            G +     +    K H V+
Sbjct: 2  YDVIVVGGGPAGYPAAIRASRSGLKVALVEKNKLGGVCLNYGCIPTKALLHVAEKYHFVK 61

Query: 61 EIDALDGL 68
             A  G+
Sbjct: 62 TGAAELGI 69


>gi|302689581|ref|XP_003034470.1| hypothetical protein SCHCODRAFT_75404 [Schizophyllum commune H4-8]
 gi|300108165|gb|EFI99567.1| hypothetical protein SCHCODRAFT_75404 [Schizophyllum commune H4-8]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +VIG GHAGC AA  A + G    L+T K                  G+ +    A+
Sbjct: 9   FDCVVIGSGHAGCCAALSAVQFGCKKVLVTDK-----------CPKEWAGGNGLFTAGAM 57

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
             + G + D A +   V    K         Q D E Y     RE
Sbjct: 58  RTVHGGLEDLAPLVRNVTPEMK--------AQIDLEAYSAEQFRE 94


>gi|218547528|ref|YP_002381319.1| NADH:flavin oxidoreductase [Escherichia fergusonii ATCC 35469]
 gi|218355069|emb|CAQ87677.1| NADH:flavin oxidoreductase [Escherichia fergusonii ATCC 35469]
 gi|324112515|gb|EGC06492.1| NADH:flavin oxidoreductase/NADH oxidase [Escherichia fergusonii
           B253]
          Length = 670

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           + R+ +V+VIGGG AG EAA  AA++G  T L+  KT  +G +SC
Sbjct: 380 VTRTTNVVVIGGGTAGMEAACTAAEVGCMTWLLEEKT-HLGGLSC 423


>gi|327541356|gb|EGF27897.1| Glucose-inhibited division protein A-related protein
           [Rhodopirellula baltica WH47]
          Length = 807

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++V+GGG+AG  +A  AA++G   ALI
Sbjct: 236 YDLVVVGGGYAGMASAISAARMGCRVALI 264


>gi|225180959|ref|ZP_03734407.1| FAD dependent oxidoreductase [Dethiobacter alkaliphilus AHT 1]
 gi|225168440|gb|EEG77243.1| FAD dependent oxidoreductase [Dethiobacter alkaliphilus AHT 1]
          Length = 434

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 55/170 (32%), Gaps = 26/170 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIG-------SMSCNPAIGG 52
           S+D IV+G G AG  AA   A+ G   AL+         +  G        M   P    
Sbjct: 3   SFDAIVVGAGPAGSSAALHMAQNGMRVALLERGDSPGNKNMFGGAIYTEPMMEIVPDFLQ 62

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQRE 110
                L R +            A  + F  L   K P   +   R + DR L   A+Q  
Sbjct: 63  EA--PLERNVTRDSLWFLDNDSAVEVGFTGLRFGKPPYNKITVLRPRFDRWLADKAVQAG 120

Query: 111 ILSQENLDVIQGEVAGFNTEKN-----IISSIVMQDNSMIRCSTVVLTTG 155
              Q      +  V     EK       +  +++ D S      V+L  G
Sbjct: 121 ATLQ-----TKAVVRDLLYEKRTLGRGRVKGVILDDGSAAEADLVILAEG 165


>gi|218679247|ref|ZP_03527144.1| succinate dehydrogenase flavoprotein subunit [Rhizobium etli CIAT
          894]
          Length = 150

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          I+ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 IDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|24378887|ref|NP_720842.1| hypothetical protein SMU.392c [Streptococcus mutans UA159]
 gi|24376768|gb|AAN58148.1|AE014886_9 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 390

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 129/418 (30%), Gaps = 70/418 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D IVIGGG AG  A   A   G    L+         +    A  G G+ ++      
Sbjct: 3   HFDTIVIGGGPAGMMACISAGFYGKKALLLEKNK----RLGKKLAGTGGGRCNVTNNGTL 58

Query: 65  LDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQEN 116
            D L      GR   +   QF   ++       G   + +   R   +      I   + 
Sbjct: 59  EDLLAGIPGNGRFLHSVFSQFDNHDIMSFFEDNGVALKVEDHGRVFPKTNKSCTI--IDC 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--------IRCSTVVLTTGTFLRGVIHIGKLK 168
           L+    E+ G    +  I S+  +D             C  +++TTG             
Sbjct: 117 LERKIKELGGLIKTQCEIVSVKKEDGQFIVKSADEAFTCQQLIITTGGKSYPSTGSTGFG 176

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
               +        L  +           K      LD  T+   K +    D     F  
Sbjct: 177 YAIAKHFKLKVTHL-EAAESPLLTDFPHKALQGISLDDVTLTCGKHQINH-DLLFTHFGL 234

Query: 229 MTDKITN--RQIECGITR--------TNLETHRII---MENIKHSAIYSGDIKSYGPRYC 275
                      I+ G T         T     + I    E    +A+ +   +       
Sbjct: 235 SGPAALRLSTFIQGGETAYLDLLPQLTKEALLKKIETTREKSLKNALKTFLPERLAAFLS 294

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNII 335
              + K+ +  +++  +I  + +              ALP  I  +       L K  + 
Sbjct: 295 EGYDHKVKQLSKKDLEKILHKIK--------------ALPIPITGKM-----SLAKSFVT 335

Query: 336 RPGYAIEYDYINPKELFP-TLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           + G       I+ KE+ P TLE+K ISGL  AG+   IN  TG      A   G VAG
Sbjct: 336 KGG-------IDLKEINPKTLESKTISGLHFAGEVLDINAHTGGFNITAALCTGWVAG 386


>gi|15605973|ref|NP_213350.1| thioredoxin reductase [Aquifex aeolicus VF5]
 gi|7388338|sp|O66790|TRXB_AQUAE RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|2983154|gb|AAC06756.1| thioredoxin reductase [Aquifex aeolicus VF5]
          Length = 323

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDVI+IG G AG  AA   A+ G  T ++
Sbjct: 10 DKVYDVIIIGAGPAGTTAAIYTARAGWKTLVL 41


>gi|32475026|ref|NP_868020.1| NADH-dependant oxidoreductase [Rhodopirellula baltica SH 1]
 gi|32445566|emb|CAD75567.1| similar to NADH-dependant oxidoreductases [Rhodopirellula baltica
           SH 1]
          Length = 822

 Score = 47.6 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++V+GGG+AG  +A  AA++G   ALI
Sbjct: 251 YDLVVVGGGYAGMASAISAARMGCRVALI 279


>gi|312867576|ref|ZP_07727784.1| flavoprotein family protein [Streptococcus parasanguinis F0405]
 gi|311096982|gb|EFQ55218.1| flavoprotein family protein [Streptococcus parasanguinis F0405]
          Length = 390

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 126/412 (30%), Gaps = 58/412 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +  IVIGGG AG  A   +A  G  T LI         +    A  G G+ ++      
Sbjct: 3   HFHTIVIGGGPAGMMATIASASYGQPTLLIEKNK----RLGKKLAGTGGGRCNVTNNGT- 57

Query: 65  LDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----RLAMQREILSQ 114
           LD LM      GR   +   QF   ++ +     G + + +            +  I + 
Sbjct: 58  LDDLMAGIPGNGRFLYSVFSQFDNHDIIQFFTDNGVKLKVEDHGRVFPVSDQSRTIIQAL 117

Query: 115 EN--LDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           EN  L++   I       +  K     IV    +      +++TTG              
Sbjct: 118 ENKILELGASIATNCEVVSVTKPEDIFIVKSSENTWTADKLIVTTGGKSYPSTGSTGYGH 177

Query: 170 PAGRMGDSPSNSLFNS----FMKFDFDT--GRLKTGTPARLDGKTIIWDKTEKQFADERL 223
              R        L  +       F      G   T          I  D     F     
Sbjct: 178 EIARHFKHSITDLEAAESPLLTDFPHKALQGISLTDVTLSYGKHIITHDLLFTHFGLSGP 237

Query: 224 IPFSFMTDKITNRQIECGITRTN--LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                 +       +   +  T    E    + E           +K+  P     + D 
Sbjct: 238 AALRMSSFVKGGEILSLDLLPTTSSQELKDFLEE--HREKAIKNSLKALLPER---LADF 292

Query: 282 IVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA 340
           + + F E+       + E L   +         LP  +  +       L K  + + G +
Sbjct: 293 LAQGFPEKAKQLTPPQTEELIQKIKE-------LPIPVTGKM-----SLAKSFVTKGGVS 340

Query: 341 IEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           ++   INPK    TLE+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 341 LKE--INPK----TLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|157737653|ref|YP_001490336.1| HI0933-like protein [Arcobacter butzleri RM4018]
 gi|157699507|gb|ABV67667.1| HI0933-like protein [Arcobacter butzleri RM4018]
          Length = 411

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 123/409 (30%), Gaps = 70/409 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL--- 58
           +   YD IVIGGG AG  A+   A    S  L+  K   I +        G GK +L   
Sbjct: 1   MKNIYDCIVIGGGPAGILASISCASEKNSVLLLE-KLPKIAA---KLKATGGGKCNLTNT 56

Query: 59  --VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILS 113
               E  A  G  GR    A   F   +++   A  G  T A    R          ILS
Sbjct: 57  LSTEEFMAKFGKNGRFMSHALEIFNASDLRNFFAKIGVETIARDGFRVFPVNHSSSIILS 116

Query: 114 QENLDVIQGEVA-GFNTEKNIIS-----SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
             + ++ +  V    +     I       I+   + + +   +++ TG     ++     
Sbjct: 117 ALDEELKRVGVEVECSVAIQTIKKEDDIFIITSKDKIYKSKNIIIATGGLGYPILGATGD 176

Query: 168 KIPAGRMGDSPSNS-----LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
                +       S     +     + +F + +  T   A L      +   +    D  
Sbjct: 177 GYIYAKDFGHSITSTHPAMMPLMTKEKNFASCKADTIAKAILKVNIPKYKNLKL-VGDLI 235

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
                     I                     E     A +S            + E+  
Sbjct: 236 FTKEGLRGPVI----------------LDFAREITPILAKHSEVPLLINFLKGKNEEEIF 279

Query: 283 VRFGER----NGHQIFLEPEG-----LNTDVVYPNGISTALPEEI-----QHQFIRTI-- 326
                       H I    E      + T+++    I T+L  +      + + ++T+  
Sbjct: 280 SHLKNEIAKNPTHTILENLETLLATSVATEILNICQIDTSLRFKQIEGIKREKLVKTLAW 339

Query: 327 --------PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
                    G +   I R G  +E   I+ K    T+++K + GL+  G
Sbjct: 340 TPFTIIGHEGFKNAMITRGG--VELKEIDSK----TMQSKIVDGLYFCG 382


>gi|158312699|ref|YP_001505207.1| soluble pyridine nucleotide transhydrogenase [Frankia sp. EAN1pec]
 gi|158108104|gb|ABW10301.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Frankia sp. EAN1pec]
          Length = 472

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG G  G +AA  AAKLG S A++  K   IG +  N    G      +RE     
Sbjct: 5   DVLVIGSGPGGQKAAIAAAKLGRSVAVVD-KRDMIGGVCINT---GTIPSKTLREAVMY- 59

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVIQGEV 124
            L G        Q   L  +   A    RTQ    RE   + + R  L++  + V+ G  
Sbjct: 60  -LTGLAQREVYGQSYRLKDEITVADLSARTQHVIGRE---IDVIRSQLTRNRVQVLSGLA 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
              +     +      +   +R + +++ TGT
Sbjct: 116 TFLDPNTVSVRGPGGVEERQVRANKIIIATGT 147


>gi|325496008|gb|EGC93867.1| NADH:flavin oxidoreductase [Escherichia fergusonii ECD227]
          Length = 670

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           + R+ +V+VIGGG AG EAA  AA++G  T L+  KT  +G +SC
Sbjct: 380 VTRTTNVVVIGGGTAGMEAACTAAEVGCMTWLLEEKT-HLGGLSC 423


>gi|312194576|ref|YP_004014637.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
           sp. EuI1c]
 gi|311225912|gb|ADP78767.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia
           sp. EuI1c]
          Length = 469

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG G  G +AA  AAKLG   A++  +   +G +  N    G      +RE   
Sbjct: 3   DYDVLVIGSGPGGQKAAIAAAKLGRRVAIVD-RRDMMGGVCINT---GTIPSKTLREAVL 58

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVIQG 122
              L G        Q   +           RTQ    RE+    + R  LS+ ++ ++ G
Sbjct: 59  Y--LTGLSQREMYGQSYRVKDDITVGDLTTRTQHVISREV---DVIRSQLSRNHVSILTG 113

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             A  +     I+S    D   +    V++ TGT
Sbjct: 114 TAAFIDPHTLSITSAAGIDGRHVTAEKVIIATGT 147


>gi|303326796|ref|ZP_07357238.1| thioredoxin-disulfide reductase [Desulfovibrio sp. 3_1_syn3]
 gi|302862784|gb|EFL85716.1| thioredoxin-disulfide reductase [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++YD +VIGGG AG  AA   A+ G S +    
Sbjct: 2  KAYDAVVIGGGPAGITAALYLARSGCSVSFFEQ 34


>gi|300722333|ref|YP_003711618.1| 2-octoprenyl-3-methyl-6-methoxy-1, 4-benzoquinone hydroxylase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628835|emb|CBJ89413.1| 2-octoprenyl-3-methyl-6-methoxy-1, 4-benzoquinone hydroxylase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 397

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 15/168 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH----L 58
            + +D++V+G G  G   A   A+ G   AL+ H+          P +           L
Sbjct: 7   QQKFDIVVVGAGMIGAATALGLAQEGWCVALLEHQLPESYDAGNEPDVRVSAISCASVDL 66

Query: 59  VREIDALDGLMGRVADAAGIQFR--------VLNVKKGPAVRGPRTQADRELYRLAMQRE 110
           ++++ A   ++ ++  A   Q          V+   +   +       +  + +LA+ +E
Sbjct: 67  LKQLGAWKNVL-QMRSAPYRQLETWEQNDSNVIFEARNLGLPELGYMVENRILQLALWQE 125

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGT 156
                NL +           ++   S  + + D + I    ++   G 
Sbjct: 126 FERYPNLTLFCPATLKSMQRQHEHKSWLVTLADGTEINTRLIIGADGA 173


>gi|307300615|ref|ZP_07580390.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
 gi|306904149|gb|EFN34734.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
          Length = 425

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          ++ +D+IVIGGG  GC  A  AA+LG    ++   T   G    N       +G   RE+
Sbjct: 10 SQKWDLIVIGGGIVGCSTAFYAARLGLRVLIVERDTPGSGQSGRNLGFVRQ-QGRDFREL 68


>gi|262405984|ref|ZP_06082534.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647959|ref|ZP_06725510.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294806926|ref|ZP_06765751.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|262356859|gb|EEZ05949.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636675|gb|EFF55142.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294445955|gb|EFG14597.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 623

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             YD +V+GGG AG  AA  AA+LG   AL+
Sbjct: 183 HQYDFVVVGGGIAGMCAATSAARLGCKVALV 213


>gi|237717217|ref|ZP_04547698.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229443200|gb|EEO48991.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 622

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             YD +V+GGG AG  AA  AA+LG   AL+
Sbjct: 182 HQYDFVVVGGGIAGMCAATSAARLGCKVALV 212


>gi|16263637|ref|NP_436430.1| Oxidoreductase [Sinorhizobium meliloti 1021]
 gi|14524348|gb|AAK65842.1| Oxidoreductase [Sinorhizobium meliloti 1021]
          Length = 437

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          ++ +D+IVIGGG  GC  A  AA+LG    ++   T   G    N       +G   RE+
Sbjct: 10 SQKWDLIVIGGGIVGCSTAFYAARLGLRVLIVERDTPGSGQSGRNLGFVRQ-QGRDFREL 68


>gi|37525280|ref|NP_928624.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784707|emb|CAE13607.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase UbiF
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 393

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH----L 58
            + +DV+V+G G  G   A   A+ G + AL+ H+          P +           L
Sbjct: 5   QQIFDVVVVGAGMIGAATALGLAQEGWTVALLDHQPPQSYDAQSQPDVRVSAISCASVDL 64

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQREI 111
           ++++ A D ++   +                             Y       +LA+ ++ 
Sbjct: 65  LKQLGAWDAVLQMRSAPYRTLETWEQNDSNLVFDAQSLGLPELGYMVENRILQLALWQQF 124

Query: 112 LSQENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGT 156
               NL ++   V      +       + + D + +    +V   G 
Sbjct: 125 EKYPNLTLLCPAV--LQAMQWQKVGWLVTLADGTEMAARLIVGADGA 169


>gi|291616255|ref|YP_003518997.1| FadH [Pantoea ananatis LMG 20103]
 gi|291151285|gb|ADD75869.1| FadH [Pantoea ananatis LMG 20103]
          Length = 682

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+VIG G AG EAA  AA++G  T L   K
Sbjct: 391 VVVIGAGTAGIEAACTAAEVGCKTWLFEAK 420


>gi|260664532|ref|ZP_05865384.1| twin-arginine translocation pathway signal [Lactobacillus
          jensenii SJ-7A-US]
 gi|313472021|ref|ZP_07812513.1| putative fumarate reductase (flavoprotein) [Lactobacillus
          jensenii 1153]
 gi|239530043|gb|EEQ69044.1| putative fumarate reductase (flavoprotein) [Lactobacillus
          jensenii 1153]
 gi|260561597|gb|EEX27569.1| twin-arginine translocation pathway signal [Lactobacillus
          jensenii SJ-7A-US]
          Length = 493

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          +I  +YD++V+G G +G  AA  AA+ G   AL+  K    G   
Sbjct: 4  LIMENYDLVVVGAGSSGISAALTAAEAGLKVALLE-KGDKFGGAG 47


>gi|220919833|ref|YP_002495136.1| precorrin 3B synthase CobZ [Methylobacterium nodulans ORS 2060]
 gi|219952253|gb|ACL62644.1| precorrin 3B synthase CobZ [Methylobacterium nodulans ORS 2060]
          Length = 462

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 48/248 (19%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------------THKT----STIGSM 44
           ++ YDV+VIGGG+A   AA  A + GAS  ++              T        T   +
Sbjct: 5   SQRYDVLVIGGGNAALCAAISARREGASVLVLEAADAFWRGGNTRHTRNMRCAHDTATEI 64

Query: 45  SCNP------------AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV-------LNV 85
              P              GG     L R +      M    +  G++++        L  
Sbjct: 65  LTGPYTEEEFFEDLLLVTGGRTDEDLARHMIRESKEMLTWIEEQGVRWQPSLGGTLSLGR 124

Query: 86  KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
                + G R   +  LY  A +  +  +      + EV     E     S  ++D   I
Sbjct: 125 TNSFFLGGGRAMLN-ALYATAERLGVEVR-----YEAEVTDLEIEDGHFLSATLRDGERI 178

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS---FMKFDFDTGRLKTGTPA 202
           R  T+V   G F          +       +       N+    +K   D G  + G P 
Sbjct: 179 RAGTLVAAAGGFESN--IAWLKRYWGEAADNFLIRGTSNNKGTILKLLLDRGVQEVGDPT 236

Query: 203 RLDGKTII 210
           +     I 
Sbjct: 237 QCHAVAID 244


>gi|182419042|ref|ZP_02950296.1| NADH oxidase [Clostridium butyricum 5521]
 gi|237669339|ref|ZP_04529321.1| NADH oxidase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376997|gb|EDT74567.1| NADH oxidase [Clostridium butyricum 5521]
 gi|237655226|gb|EEP52784.1| NADH oxidase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 667

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +N+  +V+VIGGG AG EAA  AA+ G  T L   K
Sbjct: 379 VNKHTNVVVIGGGTAGLEAACTAAEAGCMTFLFEKK 414


>gi|86750286|ref|YP_486782.1| tricarballylate dehydrogenase [Rhodopseudomonas palustris HaA2]
 gi|86573314|gb|ABD07871.1| Precorrin 3B synthase CobZ [Rhodopseudomonas palustris HaA2]
          Length = 441

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N ++DV VIGGG AG  AA  A + G S  L+
Sbjct: 1  MNSTWDVAVIGGGLAGLCAAIAARRAGVSVRLL 33


>gi|70725228|ref|YP_252142.1| hypothetical protein SH0227 [Staphylococcus haemolyticus JCSC1435]
 gi|68445952|dbj|BAE03536.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 453

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 36/217 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIG-SMSCNPAIGGLGKGHLV 59
           +++SYD+IVIG G  G  AA  AA+LG + A++       +  ++ C P+   L  G  +
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRAAQLGKNVAIVEKQHVGGVCLNVGCIPSKIFLEYGAKM 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           R+I + +   G   +   I    L  +K   V+                R+ L Q N+D 
Sbjct: 61  RDIHSANNW-GIKTNHIDIDVTSLVKRKDQVVKTVTDDV----------RDALRQHNVDF 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-----LRGVIHIGKLKIPAGRM 174
           I+GE       K  +      D ++     ++L TGT      + G+             
Sbjct: 110 IEGEAEVLEGLKVQV------DQAIYTAKDIILATGTKPFVPPIEGLDKAHFEIADTFFD 163

Query: 175 GDSPSNSL------------FNSFMKFDFDTGRLKTG 199
            +     L             +S    D D   L+ G
Sbjct: 164 MEQLPKQLVIIGGGVIASEIASSMADLDVDVTILEKG 200


>gi|84998962|ref|XP_954202.1| hypothetical protein [Theileria annulata]
 gi|65305200|emb|CAI73525.1| hypothetical protein TA20215 [Theileria annulata]
          Length = 1207

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 17/172 (9%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +      RL  +        E R ++   + ++    + 
Sbjct: 555 KKERLEQERLEKERLEKERLEQQRQEQERLRKL--------EERLEKERIHEEQERLEKE 606

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            ++   +              + +     E + +     + L     +  K   L  ERL
Sbjct: 607 RIEQERIRKLEEQRLEKERLAEKERLDIEEKIRFAQEVQKRLAREETERLKKERLEQERL 666

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           + E        +Q  E + ++  E+RL  +           +E +E+L   +
Sbjct: 667 EKERLEKERLEQQRQEQERLRKLEERLEKERI---------HEEQERLEKER 709



 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 18/173 (10%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF-LR 475
            K  LE  R+   R E     +      RL  +        E R ++    I+E     +
Sbjct: 452 KKERLEQERLEKERLEKERLEQQRQEQERLRKL--------EERLEQERLAIEEQERLEK 503

Query: 476 SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
             ++   +              + +     E + +     + L     +  K   L  ER
Sbjct: 504 ERIEQERIRKLEEQRLEKERLAEKERLDIEEKIRFAQEVQKRLAREETERLKKERLEQER 563

Query: 536 LQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           L+ E        +Q  E + ++  E+RL  +           +E +E+L   +
Sbjct: 564 LEKERLEKERLEQQRQEQERLRKLEERLEKERI---------HEEQERLEKER 607


>gi|21674056|ref|NP_662121.1| geranylgeranyl hydrogenase BchP, putative [Chlorobium tepidum TLS]
 gi|21647207|gb|AAM72463.1| geranylgeranyl hydrogenase BchP, putative [Chlorobium tepidum TLS]
          Length = 399

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 37/219 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD ++ G G AGC AA   A+ G    LI               I G G      E+ 
Sbjct: 2   QRYDAVISGAGPAGCSAALSLAQKGRRVLLI-----DKARFPRE-KICGDGVTAASTELL 55

Query: 64  ALDGLMGRVADAAG-----------------IQFRVLNVK--KGPAVRGPRTQADRELYR 104
              G++  +    G                 +Q R+L      G +   PR   D  L  
Sbjct: 56  EEMGVLELLRQRPGSLTEFRGATFVSPGGTVVQGRILRNGHLSGSSYVIPRMVLDDSL-- 113

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF------L 158
             + R         + +  V G   + +    +            ++   G +      L
Sbjct: 114 --VSRVKEHSSITFLDKTTVTGLVMDGDRARGVATSAG-EFCGRIIIAADGAYSPIAKQL 170

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
                  + +  A R   S    L +S ++  +D   L 
Sbjct: 171 DLWNRDKRQQGFAMRAWFSGVEGLGDS-IELCYDKAMLP 208


>gi|182419142|ref|ZP_02950396.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           butyricum 5521]
 gi|237669191|ref|ZP_04529173.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377097|gb|EDT74667.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           butyricum 5521]
 gi|237655078|gb|EEP52636.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 539

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 37/185 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA------IGGLGKGHLVR 60
           DV VIG G AG  AA  A++ G S  +I    + +   S  P       IG   K     
Sbjct: 14  DVFVIGAGIAGVMAAIQASQKGTSV-IIASSANILSGSSFYPGTWGLGLIGPENKEDEKD 72

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADR----------ELYRLA 106
               +  +   V D   +Q  V N+ KG     ++     +AD           +     
Sbjct: 73  LARTIKEVGCDVVDENLVQTFVSNIPKGIQLIKSMNIKLKEADNKGQKEFIPCFDHKARN 132

Query: 107 MQREIL-----------SQENL-DVIQGEVAGFNTEKNIISSIVM----QDNSMIRCSTV 150
               +            + EN+  +   EV     +   +  +V+    +    I+C  +
Sbjct: 133 WNGILFDSAKEVFSNKLNGENIKTLPFSEVIEIIKDGEKVIGVVLINEYKKLEFIKCKAI 192

Query: 151 VLTTG 155
           V+ TG
Sbjct: 193 VIATG 197


>gi|113475376|ref|YP_721437.1| thioredoxin-disulfide reductase [Trichodesmium erythraeum IMS101]
 gi|110166424|gb|ABG50964.1| Thioredoxin-disulfide reductase [Trichodesmium erythraeum IMS101]
          Length = 318

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN------PAIGGLG 54
          M    +DV++IGGG AGC  A   ++    T ++      +G+++        P + G  
Sbjct: 1  METYEFDVVIIGGGPAGCSCALYTSRADLKTVILDKNP-AVGALAITHKIANYPGVAGNI 59

Query: 55 KGH-LVREIDAL 65
           G+ L+ E+   
Sbjct: 60 SGNALLDEMREQ 71


>gi|307594955|ref|YP_003901272.1| geranylgeranyl reductase [Vulcanisaeta distributa DSM 14429]
 gi|307550156|gb|ADN50221.1| geranylgeranyl reductase [Vulcanisaeta distributa DSM 14429]
          Length = 458

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          ++DVIV+G G AG  A+ + AK G + ALI  K       +   AIG
Sbjct: 3  NFDVIVVGAGTAGSYASYLLAKAGLNVALIEMKRRDKVFKTTGDAIG 49


>gi|253578808|ref|ZP_04856079.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849751|gb|EES77710.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 666

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +N++ +V+VIGGG AG EAA  AA++G +T L+
Sbjct: 380 VNKNCNVVVIGGGTAGLEAACTAAEVGCNTFLL 412


>gi|209885324|ref|YP_002289181.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Oligotropha carboxidovorans OM5]
 gi|209873520|gb|ACI93316.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Oligotropha carboxidovorans OM5]
          Length = 430

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 49/161 (30%), Gaps = 15/161 (9%)

Query: 7   DV--IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV----- 59
           DV   +IGGG  G  AA   A+ GA TAL+  K            +GG     +      
Sbjct: 41  DVTAAIIGGGPVGLAAAIGLAQNGAPTALVARKV-AYADNRTTALLGGSVDFLIQLGVWR 99

Query: 60  -REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---- 114
             E  A    + R+ D  G   R   V +  A           +    +   + ++    
Sbjct: 100 HCEDKAAALQVMRLIDDTGRLVRAPEV-RLSAEEIGEEAFGYNIKNRMLVEALEARAAEL 158

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            NL     +      E   +  +     +    + V    G
Sbjct: 159 PNLIRHDDDARAIRDEGTSVI-VETASGTQFGAAIVGGADG 198


>gi|118431751|ref|NP_148416.2| ribulose-1,5-biphosphate synthetase [Aeropyrum pernix K1]
 gi|152031707|sp|Q9Y9Z0|RUBPS_AERPE RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|116063073|dbj|BAA81160.2| thiazole biosynthetic enzyme Thi4 [Aeropyrum pernix K1]
          Length = 270

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DVIV+G G AG  AA   A+ GA   ++   
Sbjct: 30 DVIVVGAGPAGLTAAWRLAEAGARVLIVEQN 60


>gi|114765764|ref|ZP_01444859.1| hypothetical protein 1100011001350_R2601_23635 [Pelagibaca
          bermudensis HTCC2601]
 gi|114541871|gb|EAU44907.1| hypothetical protein R2601_23635 [Roseovarius sp. HTCC2601]
          Length = 424

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 30/62 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D+ VIGGG +G  AA  AA+ GAS AL+  +T   G    N  +   G      EI A  
Sbjct: 30 DLAVIGGGFSGSAAALQAARSGASVALLEARTIGHGGSGRNVGLANAGLWLKPDEILAEL 89

Query: 67 GL 68
          G 
Sbjct: 90 GE 91


>gi|327392707|dbj|BAK10129.1| NADH oxidase FadH [Pantoea ananatis AJ13355]
          Length = 677

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+VIG G AG EAA  AA++G  T L   K
Sbjct: 386 VVVIGAGTAGIEAACTAAEVGCKTWLFEAK 415


>gi|256268878|gb|EEU04228.1| Lpd1p [Saccharomyces cerevisiae JAY291]
          Length = 499

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  K   +G    ++ C P+   L   H
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-KRGKLGGTCLNVGCIPSKALLNNSH 81

Query: 58 LVREID 63
          L  ++ 
Sbjct: 82 LYHQMH 87


>gi|329120245|ref|ZP_08248913.1| dihydrolipoyl dehydrogenase [Neisseria bacilliformis ATCC
          BAA-1200]
 gi|327462586|gb|EGF08909.1| dihydrolipoyl dehydrogenase [Neisseria bacilliformis ATCC
          BAA-1200]
          Length = 478

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ YDV VIG G  G  AA  AA+LG  T  I    +  G     PA+GG 
Sbjct: 1  MSQQYDVAVIGAGPGGYVAAIRAAQLGFKTVCIDAGVNKKGDA---PALGGT 49


>gi|161899025|ref|YP_956014.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium vanbaalenii
          PYR-1]
          Length = 560

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YDV+V+G G AG  AA  AA  G ST ++            + A  G G      
Sbjct: 1  MTEQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV----EKAPHYGGSTARSGGGVWIPNN 56

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP 94
          E+   DG+    ADAA      +     PA +  
Sbjct: 57 EVLKRDGVK-DTADAARTYLHAIIGDVVPAEKID 89


>gi|119959003|gb|ABM16008.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium vanbaalenii PYR-1]
          Length = 563

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YDV+V+G G AG  AA  AA  G ST ++            + A  G G      
Sbjct: 4  MTEQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV----EKAPHYGGSTARSGGGVWIPNN 59

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP 94
          E+   DG+    ADAA      +     PA +  
Sbjct: 60 EVLKRDGVK-DTADAARTYLHAIIGDVVPAEKID 92


>gi|269925129|ref|YP_003321752.1| amine oxidase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788789|gb|ACZ40930.1| amine oxidase [Thermobaculum terrenum ATCC BAA-798]
          Length = 556

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG------GLGKG 56
           ++ YDVIVIG GH G   A   AK G    ++  +    G+ +     G      G    
Sbjct: 4   DKDYDVIVIGAGHNGLVCANYLAKAGCKVVVLERRPVVGGASATEEMFGGYKIDVGSAVH 63

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            L+ E   +D L         +Q         P     R   D +     +++ 
Sbjct: 64  TLIHETGIIDDLKLEKFGLKYLQLDPFAFAPFPDGTYLRFYRDLDKTCEEIEKV 117


>gi|171915619|ref|ZP_02931089.1| probable xanthan lyase [Verrucomicrobium spinosum DSM 4136]
          Length = 596

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           YDV+V GG  AG  A+  AA++G   ALI       G ++   ++      HLV  I
Sbjct: 30 EYDVVVYGGSPAGIAASIQAARMGRKVALIEPTRHLGGQLTNGGSVMEPKYSHLVGGI 87


>gi|259146172|emb|CAY79431.1| Lpd1p [Saccharomyces cerevisiae EC1118]
          Length = 499

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  K   +G    ++ C P+   L   H
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-KRGKLGGTCLNVGCIPSKALLNNSH 81

Query: 58 LVREID 63
          L  ++ 
Sbjct: 82 LYHQMH 87


>gi|223039298|ref|ZP_03609587.1| fumarate reductase flavoprotein subunit [Campylobacter rectus
           RM3267]
 gi|222879359|gb|EEF14451.1| fumarate reductase flavoprotein subunit [Campylobacter rectus
           RM3267]
          Length = 672

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 69/232 (29%), Gaps = 26/232 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YD +VIGGG AG  AA  A + G ST ++      +       A GG+       
Sbjct: 1   MNVKYYDALVIGGGLAGLRAAVAAGEKGLSTVVL--SLIPVKRSHSAAAQGGMQASLGNS 58

Query: 61  EIDALDGLMGRVADAA-----GIQFRVLNVKKGPAVRGPRTQADR-----ELYRLAMQRE 110
           ++   D      AD       G    V  +    A +  R  A        + R      
Sbjct: 59  KMSEGDNEDVHFADTVKGSDWGCDQEVARMFCQTAPKAIRELAAWGVPWTRITRGERSAI 118

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG-------VIH 163
           I +Q+   V + EV G     +       +  +         T    +          IH
Sbjct: 119 INAQKTTIVEKDEVHGLI--HSRDFGGTKKWRTCFTADATGHTMLFAVANEALKHNVEIH 176

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMK-----FDFDTGRLKTGTPARLDGKTII 210
             K  I      +    ++    +      +      + TG   R+   T  
Sbjct: 177 DRKEAIALIHANNRCYGAIVRDLVSGEITAYVAKGTLIATGGYGRVYKHTTN 228


>gi|151940744|gb|EDN59131.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae YJM789]
 gi|190406554|gb|EDV09821.1| dihydrolipoamide dehydrogenase precursor [Saccharomyces
          cerevisiae RM11-1a]
 gi|207345694|gb|EDZ72432.1| YFL018Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323333715|gb|EGA75107.1| Lpd1p [Saccharomyces cerevisiae AWRI796]
          Length = 499

 Score = 47.6 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          IN+S+DV++IGGG AG  AA  AA+LG +TA +  K   +G    ++ C P+   L   H
Sbjct: 23 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-KRGKLGGTCLNVGCIPSKALLNNSH 81

Query: 58 LVREID 63
          L  ++ 
Sbjct: 82 LYHQMH 87


>gi|251779942|ref|ZP_04822862.1| NADH oxidase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084257|gb|EES50147.1| NADH oxidase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 662

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           I +  +V+VIGGG AG EAA  AA++G +T LI  K
Sbjct: 380 IKKQTNVVVIGGGTAGLEAACTAAEVGCTTFLIEQK 415


>gi|323128188|gb|ADX25485.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 510

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+V+GGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVVGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|322412819|gb|EFY03727.1| putative NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 510

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+V+GGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVVGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|251783443|ref|YP_002997748.1| NADH dehydrogenase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392075|dbj|BAH82534.1| NADH dehydrogenase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 510

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+V+GGG AG  AA  AA+ G  T L+ 
Sbjct: 209 YDVLVVGGGPAGNSAAIYAARKGLKTGLLA 238


>gi|294666498|ref|ZP_06731740.1| dihydrolipoamide dehydrogenase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|292603729|gb|EFF47138.1| dihydrolipoamide dehydrogenase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
          Length = 480

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
             +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 4  QEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 50


>gi|294625475|ref|ZP_06704105.1| dihydrolipoamide dehydrogenase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292600242|gb|EFF44349.1| dihydrolipoamide dehydrogenase [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 480

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
             +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 4  QEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 50


>gi|225026412|ref|ZP_03715604.1| hypothetical protein EUBHAL_00661 [Eubacterium hallii DSM 3353]
 gi|224956249|gb|EEG37458.1| hypothetical protein EUBHAL_00661 [Eubacterium hallii DSM 3353]
          Length = 667

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +N++ +V+VIGGG AG EAA  AA++G +T L+  K
Sbjct: 381 VNKNCNVVVIGGGTAGLEAACSAAEVGCTTFLLEKK 416


>gi|78047132|ref|YP_363307.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325925704|ref|ZP_08187080.1| dihydrolipoamide dehydrogenase [Xanthomonas perforans 91-118]
 gi|78035562|emb|CAJ23211.1| dihydrolipoamide dehydrogenase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325543873|gb|EGD15280.1| dihydrolipoamide dehydrogenase [Xanthomonas perforans 91-118]
          Length = 480

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
             +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 4  QEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAALGKDG----KPALGGT 50


>gi|332969915|gb|EGK08917.1| dihydrolipoyl dehydrogenase [Desmospora sp. 8437]
          Length = 471

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-EIDALDG 67
           IV+GGG+ G E     +KLG    ++     +I     +P++  +    L +  ++ + G
Sbjct: 181 IVVGGGYIGLELGTAYSKLGTQVTVLEG-MDSILP-GVDPSMVRMVNRSLKKLGVEVVTG 238

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
            M + AD +G    V    KG          ++      +   +  + N D I  ++AG 
Sbjct: 239 AMVQSADKSGEGVTVTAEVKGE---------EKTFSADKVLVAVGRKPNTDEIGLDLAGI 289

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
            T+      I+  D  M   ++ V   G      +   K            + ++     
Sbjct: 290 ETDD---KGIIPVDRQMRTKNSKVFAIGDVAGQPMLAHKASYEG----KVAAEAIAGQPS 342

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
           + D+        T   L    +   + ++Q  D ++  FSF
Sbjct: 343 EVDYRAMPYVIFTDPELAYTGLTEKEAKEQGYDVKVSRFSF 383


>gi|332666355|ref|YP_004449143.1| FAD dependent oxidoreductase [Haliscomenobacter hydrossis DSM
          1100]
 gi|332335169|gb|AEE52270.1| FAD dependent oxidoreductase [Haliscomenobacter hydrossis DSM
          1100]
          Length = 512

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M  + YD+++IG GH G  AA   AK G    ++     
Sbjct: 1  MATQKYDIVIIGAGHNGLVAATYLAKAGKKVLVLEANAE 39


>gi|297616357|ref|YP_003701516.1| glucose-inhibited division protein A [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144194|gb|ADI00951.1| glucose-inhibited division protein A [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 622

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIGG   G  AA  +A+ GA T LI H
Sbjct: 52 YDVIVIGGEPEGVAAAVASARNGAKTLLIEH 82


>gi|289549215|ref|YP_003474203.1| thioredoxin reductase [Thermocrinis albus DSM 14484]
 gi|289182832|gb|ADC90076.1| thioredoxin reductase [Thermocrinis albus DSM 14484]
          Length = 323

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   A+ G ST ++
Sbjct: 10 QKVYDVIIIGAGPAGSSAAIYTARAGLSTLVL 41


>gi|269469275|gb|EEZ80791.1| flavoprotein [uncultured SUP05 cluster bacterium]
          Length = 394

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          + YDVI+IG G AG   AA A K G S  +                I G GK +
Sbjct: 2  KQYDVIIIGAGAAGLMCAAEALKRGRSVVI----LDKANKAGKKILISGGGKCN 51


>gi|196228912|ref|ZP_03127778.1| monooxygenase FAD-binding [Chthoniobacter flavus Ellin428]
 gi|196227193|gb|EDY21697.1| monooxygenase FAD-binding [Chthoniobacter flavus Ellin428]
          Length = 433

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDV +IGGG AG  AA + A+ G    ++
Sbjct: 1  MNEIYDVAIIGGGPAGSTAACLLARAGRRVVVL 33


>gi|330991142|ref|ZP_08315096.1| Dihydrolipoyl dehydrogenase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329761963|gb|EGG78453.1| Dihydrolipoyl dehydrogenase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 571

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
            YDVIVIG G  G   A  AA+LG   A +  K +T+G    ++ C P+   L +     
Sbjct: 112 DYDVIVIGAGPGGYVCAIRAAQLGFRVACVE-KRATLGGTCLNVGCIPSKALLQQSENFH 170

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                 G MG + D+  +    +  +K   V       +  L++      +         
Sbjct: 171 AAKDEYGEMGIIIDSVKLDLAKMMARKQSVVEANVKGVE-FLFKKNKVTWLKGT------ 223

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            G+V G        +  +  D   +    +V+ +G+   G+
Sbjct: 224 -GKVEG--------TGRITVDGKPVTARHIVIASGSDSAGL 255


>gi|326387576|ref|ZP_08209182.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207622|gb|EGD58433.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Novosphingobium nitrogenifigens DSM 19370]
          Length = 492

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +D++V+G G AG  AA  AA+ G    L+
Sbjct: 19 DEHFDMVVVGAGPAGLSAALEAARTGQRVLLV 50


>gi|260175056|ref|ZP_05761468.1| HI0933 family protein [Bacteroides sp. D2]
 gi|315923285|ref|ZP_07919525.1| FAD dependent oxidoreductase [Bacteroides sp. D2]
 gi|313697160|gb|EFS33995.1| FAD dependent oxidoreductase [Bacteroides sp. D2]
          Length = 424

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGL 53
           M  + YDV+V G G AG  AA  AA+ GA  AL        G +  N       P +G +
Sbjct: 1   MNTKYYDVLVAGAGPAGICAAVAAARQGAHVAL----IERYGVIGGNLTAGYVGPILGSV 56

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           GK  +  E+ ++ G+  +  D  G   +                 D E  +L +   +  
Sbjct: 57  GKNTMRDEVCSILGV--KDNDWIGEHGK---------------AHDFEEAKLTLAEFVAK 99

Query: 114 QENLDVI-QGEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTFLRGVIHIGKLKI 169
           ++N+DV  Q  V+    +  +I  I    N        +  +  TG  +   +     KI
Sbjct: 100 EKNIDVFLQCCVSDVIRDGKVIKGIECASNEGTLCFEAAVTIDCTGDAVVSFL--AGAKI 157

Query: 170 PAGRM 174
             GR 
Sbjct: 158 EKGRD 162


>gi|332638177|ref|ZP_08417040.1| NAD(FAD)-dependent dehydrogenase [Weissella cibaria KACC 11862]
          Length = 458

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
           VIV+GGG AG EAA      GA   L+ H   ++ S
Sbjct: 156 VIVLGGGLAGTEAAMAMRNAGAKVTLL-HNHDSLAS 190


>gi|255525071|ref|ZP_05392016.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           carboxidivorans P7]
 gi|296188519|ref|ZP_06856907.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
 gi|255511224|gb|EET87519.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           carboxidivorans P7]
 gi|296046783|gb|EFG86229.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium carboxidivorans P7]
          Length = 668

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           + +  +V+VIGGG AG EAA  AA++G +  L+  K   +G +
Sbjct: 381 VKKPVNVVVIGGGTAGLEAACTAAEVGCNVTLLEQK-DRLGGL 422


>gi|167755594|ref|ZP_02427721.1| hypothetical protein CLORAM_01108 [Clostridium ramosum DSM 1402]
 gi|167704533|gb|EDS19112.1| hypothetical protein CLORAM_01108 [Clostridium ramosum DSM 1402]
          Length = 479

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 81/494 (16%), Positives = 136/494 (27%), Gaps = 139/494 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGAS-----TALIT-----------HKTSTIGSMS 45
           +  +YDV+V+G G AG  A     +L          LI             K   I S  
Sbjct: 1   MKNNYDVVVVGAGPAGIMACY---ELYLKQPELNVLLIDKGQDVMKRHCPIKEKKIKSCP 57

Query: 46  --------CNPA------IGG-----LGKGHLVREIDAL--DGLMGRVADAAGIQFRVLN 84
                   C PA       GG      GK ++  E      D L     +        L 
Sbjct: 58  IIRNNEPGCLPACSITAGFGGAGAYSDGKFNITSEFGGWLTDYLSTNEVEDVINYVDNLY 117

Query: 85  VKKGPAVRGPRTQADREL------YR------LAMQREILSQENLDVIQGE--------- 123
           +K G          D+        Y        A  R + ++ENL ++            
Sbjct: 118 LKHGATREITDPTTDKVKEIEHRGYAVGLKLLRAKVRHLGTEENLRIMTEMSTELKEHID 177

Query: 124 ------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
                 V     E      +V++++ +I+   +VL  G                      
Sbjct: 178 MAFRTAVKEVLVEDGHAVGVVLENDEVIKAKKIVLAPGRDGSA----------------- 220

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
               L     +   +    +     R++   I     E+  ++     F + T   T  +
Sbjct: 221 ---WLTKVLKQHGLELYNNQVDIGVRVETSNI---VMEEINSNLYEGKFVYNTSVGTKVR 274

Query: 238 IEC-----GITRTNLETHRIIMENIKHSAIYSGD----------IKSYGPRYCPSIEDKI 282
             C      +   N     +   +  H                   S           ++
Sbjct: 275 TFCSNPSGHVVIENHSGTMLANGHAYHDPKLGSKNTNFALLVSHTFSEPFNEPNEFAHEV 334

Query: 283 VRFGER--NGHQIFLE----PEGLNTD-----VVY---------PNGISTALPEEIQHQF 322
            R   +  NG  +        +G  T        Y         P  +   LP       
Sbjct: 335 SRLANKLSNGSVMVQRYGDIKKGRRTTYKRLKEGYTEPTLAEAVPGDLGLVLPYNTMKSI 394

Query: 323 IRTIPGLEKVNIIRPG--------YAIEYDYINPK-ELFPTLETKKISGLFLAGQING-T 372
           I  I  L+ V    PG        Y +E  + + + ++    E  +I  L++AG   G T
Sbjct: 395 IEMIEALDNVT---PGIANEHTLLYGVEAKFYSARPKVREGFE-CEIDDLYVAGDGAGLT 450

Query: 373 TGYEEAAAQGLVAG 386
            G  +A A G++  
Sbjct: 451 RGLAQAGANGIIVA 464


>gi|149175873|ref|ZP_01854491.1| probable phytoene dehydrogenase [Planctomyces maris DSM 8797]
 gi|148845320|gb|EDL59665.1| probable phytoene dehydrogenase [Planctomyces maris DSM 8797]
          Length = 475

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDVIVIG G AG  +A + A+ G S  L+ H 
Sbjct: 12 EYDVIVIGSGLAGMTSANILARQGYSVLLLEHH 44


>gi|108804133|ref|YP_644070.1| geranylgeranyl reductase [Rubrobacter xylanophilus DSM 9941]
 gi|108765376|gb|ABG04258.1| geranylgeranyl reductase [Rubrobacter xylanophilus DSM 9941]
          Length = 420

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHL 58
           +   YD+IV+G G  G   A  AA+ G  T L+   +          C   +       L
Sbjct: 1   MGERYDLIVVGAGPGGSSTAYHAARSGLKTLLLDRQSFPRDK----PCGDGLMPHAAAEL 56

Query: 59  VREIDALDGLMGRVADAAGIQF---------RVLNVKKGPAVRGPRTQADREL 102
                AL GL G + +     F          VL  K  P + GPR    R  
Sbjct: 57  -----ALMGLGGWLEEEHHGAFTGFTIYSETAVLRQKVPPTLHGPRGYVARRK 104


>gi|254821867|ref|ZP_05226868.1| FAD dependent oxidoreductase, putative [Mycobacterium
          intracellulare ATCC 13950]
          Length = 522

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M    YD IV+G GH G  AAA+  + G  T  +   T
Sbjct: 1  MSTNHYDAIVVGAGHNGLTAAAILQRAGLRTVCLEANT 38


>gi|218296281|ref|ZP_03497037.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermus aquaticus Y51MC23]
 gi|218243353|gb|EED09883.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermus aquaticus Y51MC23]
          Length = 180

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +DV+V+GGG +G  AA   A+ G    ++    S +  +S  P   GL       E+
Sbjct: 2  WDVLVVGGGPSGLSAALFLARAGLKVLVLDGGRSQVLQVSRVPNYPGLLDEPSGEEL 58


>gi|89069665|ref|ZP_01157002.1| dihydrolipoamide dehydrogenase [Oceanicola granulosus HTCC2516]
 gi|89044745|gb|EAR50851.1| dihydrolipoamide dehydrogenase [Oceanicola granulosus HTCC2516]
          Length = 466

 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 32/165 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKTS-----TIGSMSCNPAIGGLG 54
           MI  + DV VIG G AG  AA   A+  G  T LI           +G M     I    
Sbjct: 1   MITLTCDVAVIGAGTAGI-AAESRARAAGVRTMLIDPAFEGTLCANVGCMPSKLLIAAAE 59

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
             H VR   A         D   +  RV              +A R+ +   ++      
Sbjct: 60  AAHAVRGAHAFGVAATGEVDGVAVMARV--------------RAWRDRFAQGVR------ 99

Query: 115 ENLDVIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGT 156
           +NLD +   V      +        + ++D + I   +VV+ TG+
Sbjct: 100 DNLDELPEGVR--VRGRARFVGETVLALEDGTRIEAGSVVIATGS 142


>gi|326802890|ref|YP_004320708.1| thioredoxin-disulfide reductase [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650937|gb|AEA01120.1| thioredoxin-disulfide reductase [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 311

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--------HKTSTIGSMSCNPAIGGLGK 55
          ++YDVIVIG G AG  AA  A++     A++           T+T+ +     +I G   
Sbjct: 6  KTYDVIVIGAGPAGLTAALYASRANLQVAVLERGVPGGELINTATVENYPGYKSIAGPDL 65

Query: 56 GHLVRE 61
           + + E
Sbjct: 66 ANKMYE 71


>gi|255011958|ref|ZP_05284084.1| putative dihydrolipoamide dehydrogenase [Bacteroides fragilis
           3_1_12]
 gi|313149793|ref|ZP_07811986.1| dihydrolipoamide dehydrogenase [Bacteroides fragilis 3_1_12]
 gi|313138560|gb|EFR55920.1| dihydrolipoamide dehydrogenase [Bacteroides fragilis 3_1_12]
          Length = 447

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 15/152 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGG AG  AA  A K G S  L                 G +    L+     
Sbjct: 2   KYQVIIIGGGPAGYTAAEAAGKAGLSVLLF----EKQNLGGVCLNEGCIPTKTLLYSAKT 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            DG       A  +     ++ K  A +    +  R+L  L ++ ++ S  N+ +I GE 
Sbjct: 58  YDGAKHASKYAVTVSEASFDLSKIIARKS---KVVRKL-VLGVKSKLTSN-NVTIINGEA 112

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                +  I          +  C  ++L TG+
Sbjct: 113 T-ILDKNKICCG-----EEIYECDNLILCTGS 138


>gi|161528139|ref|YP_001581965.1| geranylgeranyl reductase [Nitrosopumilus maritimus SCM1]
 gi|160339440|gb|ABX12527.1| geranylgeranyl reductase [Nitrosopumilus maritimus SCM1]
          Length = 402

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          ++  YD++V+GGG AG  AA  A+K G    LI  K  +I        +
Sbjct: 1  MSDIYDLVVVGGGPAGSSAAYTASKNGLKVILIE-KEESIAESVRTSGV 48


>gi|301166717|emb|CBW26293.1| putative isomerase [Bacteriovorax marinus SJ]
          Length = 471

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          I + YDVIVIG G AG  AA   A+ G S  L+   
Sbjct: 9  ITKDYDVIVIGSGLAGMTAANKLAQNGRSVLLLESH 44


>gi|268319822|ref|YP_003293478.1| hypothetical protein FI9785_1351 [Lactobacillus johnsonii FI9785]
 gi|262398197|emb|CAX67211.1| trxB [Lactobacillus johnsonii FI9785]
          Length = 311

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++YDVIVIG G  G  AA  AA+      ++
Sbjct: 4  KKNYDVIVIGAGPGGLTAALYAARANLKVVIL 35


>gi|37520288|ref|NP_923665.1| thioredoxin reductase [Gloeobacter violaceus PCC 7421]
 gi|35211281|dbj|BAC88660.1| thioredoxin reductase [Gloeobacter violaceus PCC 7421]
          Length = 317

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 72/216 (33%), Gaps = 42/216 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+++GGG AGC  A   A+    T +          +  NPA G L    +  
Sbjct: 1   MEQFDFDVVIVGGGPAGCTCALYTARSELKTVI----------LDKNPAAGALA---ITH 47

Query: 61  EIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +I    G+ G ++ D      R   V+ G   R  R Q                   LD+
Sbjct: 48  KIANYPGVPGEMSGDHLLEVMRDQAVEFGTVYR--RAQV----------------YGLDL 89

Query: 120 IQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +  V    T + I +   +V+   +M R +++        RGV +         R  + 
Sbjct: 90  SEP-VKKVYTPEGIFTGRALVLATGAMGRIASIPGEAEYLGRGVSYCATCDGAFYRNREV 148

Query: 178 PSNSL-------FNSFMKFDFDTGRLKTGTPARLDG 206
               L            KF      +    P  LDG
Sbjct: 149 VVVGLNPEAVEEAQVLTKFASTVHWITPKDPHTLDG 184


>gi|223985551|ref|ZP_03635606.1| hypothetical protein HOLDEFILI_02912 [Holdemania filiformis DSM
           12042]
 gi|223962493|gb|EEF66950.1| hypothetical protein HOLDEFILI_02912 [Holdemania filiformis DSM
           12042]
          Length = 626

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
           V+VIGGG AGC+AA  AA+ G    LI    +  G +   P
Sbjct: 368 VVVIGGGPAGCKAALTAAERGHEVILIEKSAAVGGQLKHAP 408


>gi|301166003|emb|CBW25577.1| putative dihydrolipoyl dehydrogenase [Bacteriovorax marinus SJ]
          Length = 462

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLV 59
           +S+DV+VIG G  G  AA  A++LG + A++       G +     C P    L   H V
Sbjct: 2   KSFDVVVIGAGPGGYIAAIRASQLGKNVAIVEM--DKFGGVCLNRGCIPTKAVLKSAHSV 59

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EI  +  L   V   +    + +   KG + +  +               ++ +  +  
Sbjct: 60  HEIADMKDLGINVELKSLDGGQAVKRAKGISEKISKG-----------VEFLMKKNKITS 108

Query: 120 IQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
            +G+      +      +  +      I+ + ++L TG   R  
Sbjct: 109 YEGKAT---LKDKTTIEVKSKKGHTETIKATNIILATGAHYRSF 149


>gi|29347868|ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|255690314|ref|ZP_05413989.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           finegoldii DSM 17565]
 gi|29339770|gb|AAO77565.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|260624107|gb|EEX46978.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides
           finegoldii DSM 17565]
          Length = 626

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             SYD++VIG G AG   A  AA+LG   ALI
Sbjct: 188 TESYDLVVIGAGIAGMSTAVSAARLGCKVALI 219


>gi|302692668|ref|XP_003036013.1| hypothetical protein SCHCODRAFT_14370 [Schizophyllum commune H4-8]
 gi|300109709|gb|EFJ01111.1| hypothetical protein SCHCODRAFT_14370 [Schizophyllum commune H4-8]
          Length = 502

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 12/123 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALD 66
           V V+G G  GC AA   AK G    L   +    +     N A+  +      R I AL 
Sbjct: 11  VAVVGAGPVGCLAAMALAKRGWRVDLYEGRADLRLPESRENAALRSINLAMSHRGIIALQ 70

Query: 67  GLMGRVADAAG-----IQFRVLNVKKGPAVRGPRTQA-DRE-LYRLAMQREILSQENLDV 119
            +    AD        +  R+++  KG      RT   DR+  +  ++ R +L+Q  LD 
Sbjct: 71  AVNPAAADRFLADAIPMHGRMIHTPKGE----ERTVFYDRDNQHINSIDRAVLNQGLLDE 126

Query: 120 IQG 122
           ++ 
Sbjct: 127 VEA 129


>gi|226311318|ref|YP_002771212.1| electron transfer flavoprotein-quinone oxidoreductase
          [Brevibacillus brevis NBRC 100599]
 gi|226094266|dbj|BAH42708.1| electron transfer flavoprotein-quinone oxidoreductase
          [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVI++G G AG   A   AK G +  L+
Sbjct: 1  MAEKFDVIIVGAGPAGTACAYTLAKAGVNVLLM 33


>gi|222087467|ref|YP_002546004.1| succinate dehydrogenase, flavoprotein subunit [Agrobacterium
           radiobacter K84]
 gi|221724915|gb|ACM28071.1| succinate dehydrogenase, flavoprotein subunit [Agrobacterium
           radiobacter K84]
          Length = 613

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 69/221 (31%), Gaps = 52/221 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------------HKTSTIGSM 44
           ++ SYDVIV+G G AG  A    A+ G  TA IT                      +   
Sbjct: 16  VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACITKVFPTRSHTVAAQGGIAASLQNMTPD 75

Query: 45  SCNPAIGGLGKGH-LVREIDALDGLMGRVADA-----------------------AGIQF 80
           S    +    KG   + ++DA+  ++     A                        G   
Sbjct: 76  SWQWHLYDTVKGSDWLGDVDAMQYMVMEAPKAVYELEHYGVPFSRNEEGKIYQRPFGGHM 135

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQGEVAGFN--TEKNIISS 136
           +  N  +GP V+     ADR  + +       S  N     I+          + +  + 
Sbjct: 136 Q--NFGEGPPVQRTCAAADRTGHAILHTLYGQSLRNNAEFFIEYFALDLIMSDDGSRCTG 193

Query: 137 IV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +V   + D ++       VVL TG + R            G
Sbjct: 194 VVAWCLDDGTIHRFAAKMVVLATGGYGRAYFSATSAHTCTG 234


>gi|114776890|ref|ZP_01451933.1| soluble pyridine nucleotide transhydrogenase [Mariprofundus
          ferrooxydans PV-1]
 gi|114552976|gb|EAU55407.1| soluble pyridine nucleotide transhydrogenase [Mariprofundus
          ferrooxydans PV-1]
          Length = 464

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD++++G G AG  AA  AA++G   A+I             P+IGG G
Sbjct: 2  DYDILIVGSGPAGQHAAWQAARMGKRAAIIE----------RKPSIGGAG 41


>gi|317126259|ref|YP_004100371.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Intrasporangium calvum DSM 43043]
 gi|315590347|gb|ADU49644.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Intrasporangium calvum DSM 43043]
          Length = 501

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
             YDVIV+GGG AG  AA  A + GA  AL+     
Sbjct: 8  EHPYDVIVVGGGIAGLSAALSATENGARVALLERSVE 44


>gi|213162558|ref|ZP_03348268.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
          Length = 34

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIP 565
             E+++I+  Y  Y  RQ  E ++    E  L+P
Sbjct: 1   AAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLP 34


>gi|209549239|ref|YP_002281156.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209534995|gb|ACI54930.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 403

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH---KTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++V VIGGG AG  AA   A+ G S AL+     +     +   + +I  L +  L  
Sbjct: 2   KTFEVAVIGGGLAGMIAAIALARGGRSVALVAPVAAREDRRTTALMDQSIRFLDRLALWE 61

Query: 61  EID--ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----Q 114
           ++   A      R+ D      R        A  G            A+   + +    +
Sbjct: 62  KLRPAATPLSSMRIVDGTDRLLRAPTTTFRAAEVGLDA-FGYNFPNKALIEVLETAVAGE 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            N+                +S I +     +     V   G
Sbjct: 121 GNITRFTDMAESIAISAESVS-ITLTGGETLTADFAVGADG 160


>gi|297825429|ref|XP_002880597.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp.
          lyrata]
 gi|297326436|gb|EFH56856.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp.
          lyrata]
          Length = 415

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +DVIV+G G  G  AA   AK G  T L+  
Sbjct: 6  DGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQ 39


>gi|227889616|ref|ZP_04007421.1| thioredoxin-disulfide reductase [Lactobacillus johnsonii ATCC
          33200]
 gi|227849759|gb|EEJ59845.1| thioredoxin-disulfide reductase [Lactobacillus johnsonii ATCC
          33200]
          Length = 311

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++YDVIVIG G  G  AA  AA+      ++
Sbjct: 4  KKNYDVIVIGAGPGGLTAALYAARANLKVVIL 35


>gi|90414096|ref|ZP_01222079.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photobacterium profundum 3TCK]
 gi|90324891|gb|EAS41419.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photobacterium profundum 3TCK]
          Length = 386

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNP----AIGGLGKGHL 58
             YDVIV GGG  G   A   A+ G S A+I  K   +            AI       L
Sbjct: 2   EQYDVIVAGGGMIGAATALGLAQQGLSVAVIEGKAPESFEPQQAMDLRVSAISPNSIALL 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELY-------RLAM 107
            R + A DG+M          F+ L   + P  R          DR  Y       +L +
Sbjct: 62  TR-LGAWDGIM----KMRLCPFKRLETWEHPECRTRFNADEMNLDRLGYIVENRIIQLGL 116

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            R+  S  NL ++       +        + + D   ++   +V   G 
Sbjct: 117 WRQFDSYSNLTLLCPARMAHSYSTTDGYCVELDDGRHLQAKLLVGADGA 165


>gi|15224169|ref|NP_180034.1| sarcosine oxidase family protein [Arabidopsis thaliana]
 gi|20139956|sp|Q9SJA7|SOX_ARATH RecName: Full=Probable sarcosine oxidase
 gi|4572673|gb|AAD23888.1| putative sarcosine oxidase [Arabidopsis thaliana]
 gi|17529040|gb|AAL38730.1| putative sarcosine oxidase [Arabidopsis thaliana]
 gi|21436151|gb|AAM51322.1| putative sarcosine oxidase [Arabidopsis thaliana]
 gi|46251338|gb|AAS84616.1| peroxisomal sarcosine/pipecolate oxidase [Arabidopsis thaliana]
 gi|110742357|dbj|BAE99101.1| putative sarcosine oxidase [Arabidopsis thaliana]
 gi|330252500|gb|AEC07594.1| putative sarcosine oxidase [Arabidopsis thaliana]
          Length = 416

 Score = 47.2 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +DVIV+G G  G  AA   AK G  T L+  
Sbjct: 6  DGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQ 39


>gi|319942701|ref|ZP_08017007.1| electron-transferring-flavoprotein dehydrogenase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803711|gb|EFW00652.1| electron-transferring-flavoprotein dehydrogenase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 431

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AGC AA V AK G    +                 GG    H + 
Sbjct: 1   MSEDKFDAIVVGAGVAGCVAAYVLAKEGLDVLV----IERGNYAGSKNMTGGRLYAHSLE 56

Query: 61  -------EIDALDGLMGR--VADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQR 109
                  E   ++ L+ R  ++         L+   G A           R  +   +Q 
Sbjct: 57  RVMPGFAEEAPVERLVTREKISFITDDDSVTLDYHTGEAFSAEAASYTVLRGKFDQWLQE 116

Query: 110 EILSQENLDVIQGEVAG--FNTEKNIISSI 137
           +  S E    I G         E   ++ +
Sbjct: 117 KAES-EGAQFIPGIRVDRLLQDETGRVTGV 145


>gi|292490269|ref|YP_003525708.1| dihydrolipoamide dehydrogenase [Nitrosococcus halophilus Nc4]
 gi|291578864|gb|ADE13321.1| dihydrolipoamide dehydrogenase [Nitrosococcus halophilus Nc4]
          Length = 477

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV++IG G AG  AA   A+LG  TA          S    P++GG 
Sbjct: 1  MSERYDVVIIGAGPAGYVAAIRCAQLGLRTAC----IDKWLSPEGKPSLGGT 48


>gi|42518777|ref|NP_964707.1| thioredoxin reductase [Lactobacillus johnsonii NCC 533]
 gi|41583063|gb|AAS08673.1| thioredoxin reductase [Lactobacillus johnsonii NCC 533]
          Length = 311

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++YDVIVIG G  G  AA  AA+      ++
Sbjct: 4  KKNYDVIVIGAGPGGLTAALYAARANLKVVIL 35


>gi|143526|gb|AAA22746.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis]
 gi|1770052|emb|CAA99547.1| flavoprotein subunit of succinate dehydrogenase complex [Bacillus
           subtilis]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 103/576 (17%), Positives = 179/576 (31%), Gaps = 108/576 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPLKAMCEAAPSIIHLLDRMAVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ----INGT-----TG 374
               + I  P  A+ Y      ++  ++        I GLF AG+    ++G      T 
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLERTS 391

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDS------------------YIGVMIDDLT 416
              A   G+VAG N+ +  N L+      + S                    G     + 
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWADIMIMDGTENAYVL 451

Query: 417 SKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
            K + E      +   +    L+ D+    L     K+      +   + A + ++++ +
Sbjct: 452 HKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS 509
             L + + L +     S    +K D   R   E+L 
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLK 547


>gi|108803082|ref|YP_643019.1| thioredoxin reductase [Rubrobacter xylanophilus DSM 9941]
 gi|108764325|gb|ABG03207.1| thioredoxin reductase [Rubrobacter xylanophilus DSM 9941]
          Length = 332

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDV+V+G G AG  AA  AA+    T + 
Sbjct: 1  MSEQYDVVVVGSGPAGYTAALYAARANLRTLVF 33


>gi|256824201|ref|YP_003148161.1| alkyl hydroperoxide reductase, F subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256687594|gb|ACV05396.1| alkyl hydroperoxide reductase, F subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 560

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 41/155 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y+V+V+GGG AG  AA  AA+ G  T L+                            + +
Sbjct: 219 YEVLVLGGGPAGSTAAIYAARKGIRTGLVA---------------------------ERM 251

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-RLAMQREILSQENLDVIQGEV 124
            G +            + NV       GP+  AD E +        + SQE + V   E 
Sbjct: 252 GGQV-------NDTMSIENVSGTSHTEGPKLAADLERHVNDYEVELVKSQEAVGVTPAEA 304

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            G         S+ +   + +R  ++V+ TG   R
Sbjct: 305 EG------GYHSVELASGATLRSRSLVIATGASWR 333


>gi|88608597|ref|YP_506348.1| dihydrolipoamide dehydrogenase [Neorickettsia sennetsu str.
          Miyayama]
 gi|88600766|gb|ABD46234.1| dihydrolipoamide dehydrogenase [Neorickettsia sennetsu str.
          Miyayama]
          Length = 457

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YDVIV+GGG AG  AA  A++ G   AL+   
Sbjct: 2  YDVIVVGGGPAGYPAAIRASRSGLKVALVEKN 33


>gi|82705890|ref|XP_727156.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482863|gb|EAA18721.1| glutamine-asparagine rich protein [Plasmodium yoelii yoelii]
          Length = 978

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL 518
            R++   + +++    +  L    L  + L    ++ ++  + +   E L+      + L
Sbjct: 410 ERERLAQEKLKQEQLEQERLAQEKLKQEQLERERLAQEKLKQEQLEQERLAQEKLKQERL 469

Query: 519 FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE--EKRLI 564
                +  K     +ER +IE        R+ IE ++I+ E  EK+ +
Sbjct: 470 AQEKLEREKLEREKLEREKIEREK---IEREKIEREKIEREQLEKKKL 514



 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 444 NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRT 503
            RL    +K   + + R  +     ++    R  L    L  + L    ++ ++  + R 
Sbjct: 412 ERLAQEKLKQEQLEQERLAQEKLKQEQLE--RERLAQEKLKQEQLEQERLAQEKLKQERL 469

Query: 504 AYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI--KFEEK 561
           A E L       + L     +  K     IER +IE        R+ +E K++  K  E+
Sbjct: 470 AQEKLEREKLEREKL-----EREKIEREKIEREKIEREK---IEREQLEKKKLEEKRLEE 521

Query: 562 RLI 564
           + +
Sbjct: 522 KRL 524



 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 459 RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL 518
           +++K   + +++    R  L    L  + L    ++ ++  + +   E L+      + L
Sbjct: 395 KQEKLKQEKLKQEQLERERLAQEKLKQEQLEQERLAQEKLKQEQLERERLAQEKLKQEQL 454

Query: 519 FS--ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
               +  +  K   L  E+L+ E        R+ IE ++I+ E
Sbjct: 455 EQERLAQEKLKQERLAQEKLEREKLEREKLEREKIEREKIERE 497


>gi|328956741|ref|YP_004374127.1| thioredoxin reductase [Carnobacterium sp. 17-4]
 gi|328673065|gb|AEB29111.1| thioredoxin reductase [Carnobacterium sp. 17-4]
          Length = 321

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--------HKTSTIGSMSCNPAIGGLG 54
           + YDV+VIG G AG  AA  A++   ST ++           T+ I +     +I G  
Sbjct: 5  EKIYDVVVIGSGPAGMTAALYASRSNLSTLMLERGVPGGQMINTAEIENYPGFNSIAGPE 64

Query: 55 KGHLVREIDALDGLMGRVAD 74
              + E     G+    AD
Sbjct: 65 LSEKMFEGSKQFGVEYAYAD 84


>gi|317494110|ref|ZP_07952526.1| FAD dependent oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917883|gb|EFV39226.1| FAD dependent oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 430

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D I++G G +GC AA V A+ GA+  +                 GG    H + 
Sbjct: 1   MSEDVFDAIIVGAGLSGCVAALVLAREGANVLV----IERGNHAGAKNVTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKG-PAVRG---PRTQADRELYR 104
                       E       +  + D + +     + +   PA       R + D  L  
Sbjct: 57  RIIPDFATQAPVERRITHEKISFLTDDSAVTLDYHHARAAEPAQESYSVLRGKFDPWLME 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A          +      V         +  +   D  ++  + V+L  G
Sbjct: 117 QAEAAGAQFVPGIR-----VDKLIQRDGKVIGVE-ADGDILEANAVILAEG 161


>gi|262371568|ref|ZP_06064871.1| alkyl hydroperoxide reductase [Acinetobacter johnsonii SH046]
 gi|262313498|gb|EEY94562.1| alkyl hydroperoxide reductase [Acinetobacter johnsonii SH046]
          Length = 443

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 49/184 (26%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             ++DV+V+GGG AG  +A  AA+ G  T ++                            
Sbjct: 209 KEAFDVLVVGGGPAGNTSAIYAARKGIKTGIVA--------------------------- 241

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           + + G +    D       + N       +GP+  A+ E +      +I    NL     
Sbjct: 242 ERMGGQVMDTMD-------IENYTSIQKTQGPKFAAEMEAHVREYGVDI---MNL----Q 287

Query: 123 EVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRM 174
            V+         +    + +++ + +   TV+L+TG   R     G        +     
Sbjct: 288 RVSNIKGADETANGLVEVTLENGAKLESKTVILSTGARWREMNVPGEAEYRTRGVAYCPH 347

Query: 175 GDSP 178
            D P
Sbjct: 348 CDGP 351


>gi|150400117|ref|YP_001323884.1| geranylgeranyl reductase [Methanococcus vannielii SB]
 gi|209572867|sp|A6US00|GGR_METVS RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|150012820|gb|ABR55272.1| geranylgeranyl reductase [Methanococcus vannielii SB]
          Length = 390

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          +  SYDV+V+G G AG  ++  A+K GA T LI         + C  AI
Sbjct: 4  LEESYDVVVVGAGPAGSMSSYNASKNGAKTLLIEKAQEIGTPVRCAEAI 52


>gi|16125725|ref|NP_420289.1| hypothetical protein CC_1477 [Caulobacter crescentus CB15]
 gi|221234482|ref|YP_002516918.1| NAD(FAD)-utilizing dehydrogenase [Caulobacter crescentus NA1000]
 gi|13422849|gb|AAK23457.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963654|gb|ACL95010.1| NAD(FAD)-utilizing dehydrogenase [Caulobacter crescentus NA1000]
          Length = 393

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 14/171 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DV+VIG G AG   A  A K G S  +         +      I G G+ +      
Sbjct: 2   ETFDVVVIGAGAAGMMCAIEAGKRGRSVLV----IDHAKAPGEKIRISGGGRCNFTNTGA 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ++   +      A    R    +   A+         E Y +A   + L Q   D    +
Sbjct: 58  SIHNFLSANPKFALSALRRYRPRDFIALV--------ERYGIAYHEKTLGQLFCDGSAKQ 109

Query: 124 VAGFNTEKNIISSI--VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +      +   + +   ++ +       V     +   G +    L + +G
Sbjct: 110 IITMLLTEMKAAGVTLRLETSVESVAKAVSGFEVSLSSGKVACASLVVASG 160


>gi|329667675|gb|AEB93623.1| thioredoxin reductase [Lactobacillus johnsonii DPC 6026]
          Length = 311

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++YDVIVIG G  G  AA  AA+      ++
Sbjct: 4  KKNYDVIVIGAGPGGLTAALYAARANLKVVIL 35


>gi|321312377|ref|YP_004204664.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           BSn5]
 gi|320018651|gb|ADV93637.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           BSn5]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 101/576 (17%), Positives = 178/576 (30%), Gaps = 108/576 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+ + R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRICRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------GTTG 374
               + I  P  A+ Y      ++  ++        I GLF AG+ +         G   
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLGANS 391

Query: 375 YEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLT 416
              A   G+VAG N+ +  N                    +   ++   S  G     + 
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWADIMSMDGTENAYVL 451

Query: 417 SKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
            K + E      +   +    L+ D+    L     K+      +   + A + ++++ +
Sbjct: 452 HKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS 509
             L + + L +     S    +K D   R   E+L 
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLK 547


>gi|291538971|emb|CBL12082.1| Predicted flavoproteins [Roseburia intestinalis XB6B4]
          Length = 427

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 135/440 (30%), Gaps = 71/440 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V VIGGG +G  A+  +A  GA T ++ H    +G         G GK +   E+  L 
Sbjct: 5   EVAVIGGGASGLMASIASALAGADTIILEH-MDRVG---KKILATGNGKCNYTNEVQGLS 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE--- 123
              G     A   FR  + KK  A         +            +   LDV++ E   
Sbjct: 61  CYRGENPAFAVPVFRQFDQKKTVAFFREIGIEPKIKNGYYYPASEQAASVLDVLRMEAAY 120

Query: 124 --VAGFNTEKNIISS-------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             V    + +            I        R  +++  TG F           +P    
Sbjct: 121 TGVKEIVSCEIKAIKRQGDFFLIRTGTGD-FRAKSIIFATGLFASPKSGSDGSALPYIEH 179

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLD---GKTIIWDKTEKQFADERLIPFSFMTD 231
                  +  + +         K     R +      I   +T ++  + +L  +     
Sbjct: 180 FGHHIIDIVPALVPLQCRQSFFKMLAGIRAEVSIRLYINGAETTRERGELQLTDYGISGI 239

Query: 232 KITNRQIECGITRTNLETHRIIME-NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            +   QI    TR   +  ++  + +      +         R+C +          ++ 
Sbjct: 240 PVF--QISRYATRALKQKKQVYAQIDFMPDWSFGEVNDLLKLRFCMNAH-------GKDA 290

Query: 291 HQIFLEPEGLNTDVVYPN--GI-----STALPEEIQHQFIRTIPGLE----------KVN 333
            Q  +         V     GI     S  +PE+   +  + +  L           +  
Sbjct: 291 SQAMIGLCNKKLAEVLLKEAGIDLRIPSKKVPEKQLTRLTKLLKDLRVDITGSKDIAQAQ 350

Query: 334 IIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQ------ING--------TTGYEEA 378
           +   G       ++ +E+   ++ +K I GLF AG+      I G        ++GY   
Sbjct: 351 VCAGG-------VDTREIDAASMMSKLIPGLFFAGEVVDIDGICGGYNLQWAWSSGYVAG 403

Query: 379 AAQGLVA--GINSARKSNKL 396
           +  G  A  G  + RK    
Sbjct: 404 SHAGEYAHPGKKAHRKKRGN 423


>gi|209547088|ref|YP_002279006.1| electron-transferring-flavoprotein dehydrogenase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209538332|gb|ACI58266.1| Electron-transferring-flavoprotein dehydrogenase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 435

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 49/176 (27%), Gaps = 33/176 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G +                   L T     I  
Sbjct: 1   MKVEKFDAIVVGAGMSGNAAAYAMAIRGLNVLQLERGEYPGSKNVQGAILYTDALEKIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADRE 101
              + A       HLV E       +       GI +R    NV++       R Q DR 
Sbjct: 61  HFRSDAPLER---HLV-EQRFW---IMDSTSHTGIHYRSDDFNVRRPNRYTIIRAQFDR- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFN-TEKNIISSIVMQD-NSMIRCSTVVLTTG 155
                   ++       + +             +  +     N  I    VVL  G
Sbjct: 113 ----WFSNKVREAGCTVLCETTATRLIQDSNGNVKGVYTDRANESIFADIVVLAEG 164


>gi|312127086|ref|YP_003991960.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777105|gb|ADQ06591.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 462

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 139/481 (28%), Gaps = 110/481 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTS-------------TIGSMSC 46
           +N  YDVI++G G  G   A    K+   A   +                     G   C
Sbjct: 1   MNTVYDVIIVGAGPCGIFTAYELVKISSAAKVVIFEKGRDIESRECPKRVTNVCSGCKPC 60

Query: 47  NPAIGGLGKG---------------------------HLVREIDALDGLMGRVADAAGIQ 79
           N   G  G G                            L++ +D++    G      G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFVGQNKAIELIKYVDSIYLENGADTKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDV-IQGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRLQDFLLSN--NIEIKFRTPVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E   ++ +V +D S+     VV+  G    G   + K+        ++    +     
Sbjct: 179 IVEDGKVAGVVAEDGSIYHAKNVVICVG--REGASWLSKIIEKYNIPCENNRVDIGVRVE 236

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQIECG 241
                    K  T    + K I + KT     D+++  F          +   N  +  G
Sbjct: 237 T---PNHIWKGITEHLYESKFIYYTKT----FDDKVRTFCMNPGGYVAVEHYDNLAVVNG 289

Query: 242 ITRTNLE---------THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +  N++           +   +  K S  Y   I              + R+G+     
Sbjct: 290 HSYKNIKSDNTNFALLVSKHFTDPFKDSIKYGKYIAELANMLSGGK-VLVQRYGD----- 343

Query: 293 IFLEPEGLNTDVVYPNG--------------ISTALPEEIQHQFIRTIPGLEK-----VN 333
            F+   G  ++                    +S  LP  I       I  L+       +
Sbjct: 344 -FIR--GRRSNEERIKRNSVVPTLTDAVAGDLSLVLPYRIMLDIKEMIEALDYVVQGVAS 400

Query: 334 IIRPGYAIE-YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSAR 391
                Y +E   Y N  ++    E   I  L+  G   G T G  +A+  G++     A 
Sbjct: 401 FDTLLYGVEVKFYSNEVKVKNNFECLTIQNLYFGGDGAGITRGLMQASVNGVLIAREIAS 460

Query: 392 K 392
           K
Sbjct: 461 K 461


>gi|255767656|ref|NP_390722.2| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|251757490|sp|P08065|DHSA_BACSU RecName: Full=Succinate dehydrogenase flavoprotein subunit
 gi|225185284|emb|CAB14804.2| succinate dehydrogenase (flavoprotein subunit) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291485275|dbj|BAI86350.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. natto BEST195]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 101/576 (17%), Positives = 177/576 (30%), Gaps = 108/576 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------GTTG 374
               + I  P  A+ Y      ++  ++        I GLF AG+ +         G   
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLGANS 391

Query: 375 YEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLT 416
              A   G+VAG N+ +  N                    +   ++   S  G     + 
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWADIMSMDGTENAYVL 451

Query: 417 SKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
            K + E      +   +    L+ D+    L     K+      +   + A + ++++ +
Sbjct: 452 HKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS 509
             L + + L +     S    +K D   R   E+L 
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLK 547


>gi|296331608|ref|ZP_06874077.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305675433|ref|YP_003867105.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151203|gb|EFG92083.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305413677|gb|ADM38796.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 588

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 101/576 (17%), Positives = 177/576 (30%), Gaps = 108/576 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------GTTG 374
               + I  P  A+ Y      ++  ++        I GLF AG+ +         G   
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLGANS 391

Query: 375 YEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLT 416
              A   G+VAG N+ +  N                    +   ++   S  G     + 
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSAEDMSSSLFDAHVKKEEEKWAEIMSMDGTENAYVL 451

Query: 417 SKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
            K + E      +   +    L+ D+    L     K+      +   + A + ++++ +
Sbjct: 452 HKELGEWMTANVTVVRHNDKLLKTDDKIQELMERFKKININDTTKWSNQGAMFTRQFSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS 509
             L + + L +     S    +K D   R   E+L 
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLK 547


>gi|218291128|ref|ZP_03495143.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258511829|ref|YP_003185263.1| succinate dehydrogenase flavoprotein subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218238939|gb|EED06147.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478555|gb|ACV58874.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 104/632 (16%), Positives = 190/632 (30%), Gaps = 154/632 (24%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG       A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMTTIKVAEAGVPVKLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-----------------LMGRVADAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G                  +  + D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTIYGGDFLANQPPVLGMCEAAPAIIYLMDRMGVMFNRTPEGLLDFRRFGGTKHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGF-------------NTEKNIISSIVMQD--- 141
                    +   +  Q    V + EVAG                ++ I   IV QD   
Sbjct: 126 FAGASTGQQLLYALDEQ----VRRYEVAGLVEKYEGWDFLGAVIDDEQICRGIVAQDLRS 181

Query: 142 --NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTG 199
                 R   VV+ TG    G+I                     NS +        L   
Sbjct: 182 MEIHYFRADAVVMCTG--GNGLIF----------------GKSTNSMINTGSAASELYQQ 223

Query: 200 TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKH 259
                + + I    T     D++L   S        R      T  + +    + E    
Sbjct: 224 GVKYANPEMIQVHPTAI-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEE---- 274

Query: 260 SAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEE 317
                     + P Y   +   I     R  H++ +E   G++  ++VY +   T +P +
Sbjct: 275 ----------WYPEYGNLVPRDI---ATRAIHKVCVEMGLGVDGQNMVYLD--LTHIPAD 319

Query: 318 IQHQFIRTIPGL---------EKVNI-IRPGYAIEYDY----INPKELFPTLETKKISGL 363
           +  + +  I  +          KV + I P  A+ Y      ++  ++        I GL
Sbjct: 320 VLDRKLGNILDIYEKFVGDDPRKVPMKIFP--AVHYSMGGLWVDYDQMT------NIPGL 371

Query: 364 FLAGQIN---------GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVM--- 411
           F AG+ +         G          G++AG N+ R +  L     S  +S        
Sbjct: 372 FAAGEADYQYHGANRLGANSLVSCIYGGMIAGPNAVRWAKNLRKSADSLPESLFEQYRRK 431

Query: 412 ----IDDLTSKGVLE-PYRMFTSRAE----------YRISLRPDNADNR-LTPIGMKLGC 455
                +++      E PY++     +          Y   L+  +A  + L     ++  
Sbjct: 432 YEQEFEEILKLDGDENPYQLHRELGKWMTDHVTVVRYNDKLKETDAKIQELQERWKRIKM 491

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI 515
               R +       +       LK++++ ++ ++  ++   +        EF    D + 
Sbjct: 492 SDTSRWE------NQVAQFTRHLKNMLIMARAITIGALMRNESRGAHYKPEFPERDDENF 545

Query: 516 QN--LFSICPDARKFSSLVIERLQIESSYAAY 545
               +    PD  K S   ++   I+     Y
Sbjct: 546 LKTTIAEYTPDGPKISYEDVDVSLIKPRKRNY 577


>gi|325920228|ref|ZP_08182183.1| dihydrolipoamide dehydrogenase [Xanthomonas gardneri ATCC 19865]
 gi|325549314|gb|EGD20213.1| dihydrolipoamide dehydrogenase [Xanthomonas gardneri ATCC 19865]
          Length = 480

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
             +DV+VIG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 4  QEQFDVVVIGAGPAGYHAAIRAAQLGMKVACIDAAIGKDG----KPALGGT 50


>gi|312880975|ref|ZP_07740775.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Aminomonas paucivorans DSM 12260]
 gi|310784266|gb|EFQ24664.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Aminomonas paucivorans DSM 12260]
          Length = 434

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-GYAIEYD--YINPKELFPTLETK-KISGLFLAGQI 369
           +      + +R +PG+E+     P G        +        +L  +     LF AG+ 
Sbjct: 269 MTPTFPLEQLRRVPGMERARFEDPLGGGRGNSMRFFRFARCDASLRARGPAENLFCAGER 328

Query: 370 NG-TTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLE 422
            G   G+ EA   G +AG N+AR +  LD +    + +  G  +  +  +   E
Sbjct: 329 GGPMVGHTEALVTGALAGHNAARCALGLDPLVLPPSLA-CGDFVAHVLEQVETE 381


>gi|310780063|ref|YP_003968395.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
 gi|309749386|gb|ADO84047.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
          Length = 554

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D++VIGGG AG  AA  A++ GA   L      ++G     P   G         
Sbjct: 43  LEQETDILVIGGGIAGVFAALRASRNGAKVIL--VDKGSVGRSGQTPFANGFAVFDEANG 100

Query: 62  IDALDGLMGRVADAAGIQF-----RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            D          +  GI       ++++  K          A +  +    + ++ + E 
Sbjct: 101 DDRATWHKNMATNTDGIHRPEYLDQLMDYSKEIYEEMESWGATKVGFGKVFREKLYN-EG 159

Query: 117 LDVIQ-GEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGT 156
           + +I+   +     +   ++  V      ++  +++  +V+L TG 
Sbjct: 160 IQIIERTMLTTLLEKNGKVAGAVGFKLDSEEAVVVKAKSVILCTGA 205


>gi|289619609|emb|CBI53892.1| unnamed protein product [Sordaria macrospora]
          Length = 524

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 41/178 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLGK 55
           +   DV+++G G  GC AA   A  G S  L+    H+   I      P    A+   G 
Sbjct: 19  HHEADVVIVGAGVFGCAAAYALANQGRSVILLERWMHEPDRIVGELLQPGGLQALQSFGL 78

Query: 56  GHLVREIDAL-----------------------------DGLMGRVADAAGIQFRVLN-- 84
           GH V  IDA+                                  RV           N  
Sbjct: 79  GHCVEGIDAITCYGYHVVFHGEEVAIPYPVVDDQGKVYSGEAAARVESTTTTTTSTPNGK 138

Query: 85  VKKGPAVRGPRTQ-ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--IISSIVM 139
              GP +R P  +      +   +++   +  N+ + +  V       +   +  +  
Sbjct: 139 THNGPKLRRPEGRSFHHGRFISQLRKACAAHPNITMFETTVTSVIRGSHSEQVLGVET 196


>gi|116252048|ref|YP_767886.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256696|emb|CAK07784.1| putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 403

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTAL---ITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++++V VIGGG AG  AA   A+ G S AL   +  K     +   + +I  L +  L  
Sbjct: 2   KTFEVAVIGGGLAGMIAAIALARGGRSVALVAPLAPKEDRRTTALMDQSIRFLDRLALWE 61

Query: 61  EIDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----Q 114
           ++      +   R+ D      R        A  G            A+   +      +
Sbjct: 62  KLRPAAAPLTSMRIVDGTDRLLRAPTTTFRAAEVGLDA-FGYNFPNKALTGILEEAAAGE 120

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            N+                +S I +     +     V   G
Sbjct: 121 GNITRSTDMAESIEISAEAVS-ITLAGGETLSADFAVGADG 160


>gi|325275366|ref|ZP_08141314.1| dihydrolipoamide dehydrogenase [Pseudomonas sp. TJI-51]
 gi|324099510|gb|EGB97408.1| dihydrolipoamide dehydrogenase [Pseudomonas sp. TJI-51]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|317121955|ref|YP_004101958.1| electron-transferring-flavoproteindehydrogenase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591935|gb|ADU51231.1| Electron-transferring-flavoproteindehydrogenase [Thermaerobacter
           marianensis DSM 12885]
          Length = 432

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 22/188 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV+++G G AG  A  V A+ GA+  +                +GG+   H + E
Sbjct: 1   MAERFDVVIVGAGPAGLSAGLVLARGGANVLI----LERGEYPGSKNVMGGVLYRHQLDE 56

Query: 62  IDA---LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQRE 110
           +      +  + R            +       R PR   D        R  +     ++
Sbjct: 57  LLPGFWREAPIERTIVEQNYWLMTPDSAVTFGYRTPRWADDPPNNFTVLRAKFDPWFAKK 116

Query: 111 ILSQENLDVIQGEVAGFNTEKN-IISSIVMQD-NSMIRCSTVVLTTG-----TFLRGVIH 163
           +       + +  V     +    +  +V       +    V+L  G     T   G+  
Sbjct: 117 VEEAGATLITRTTVVDLIHDDRGRVVGVVAGRPEGEVYADVVILAEGVNNLLTQKAGLHD 176

Query: 164 IGKLKIPA 171
             K+   A
Sbjct: 177 DWKMNEAA 184


>gi|167034753|ref|YP_001669984.1| dihydrolipoamide dehydrogenase [Pseudomonas putida GB-1]
 gi|166861241|gb|ABY99648.1| dihydrolipoamide dehydrogenase [Pseudomonas putida GB-1]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|170722674|ref|YP_001750362.1| dihydrolipoamide dehydrogenase [Pseudomonas putida W619]
 gi|169760677|gb|ACA73993.1| dihydrolipoamide dehydrogenase [Pseudomonas putida W619]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|26990879|ref|NP_746304.1| dihydrolipoamide dehydrogenase [Pseudomonas putida KT2440]
 gi|24985892|gb|AAN69768.1|AE016613_3 2-oxoglutarate dehydrogenase, lipoamide dehydrogenase component
          [Pseudomonas putida KT2440]
 gi|313497967|gb|ADR59333.1| LpdG [Pseudomonas putida BIRD-1]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|1706442|sp|P31052|DLDH2_PSEPU RecName: Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of 2-oxoglutarate dehydrogenase complex;
          AltName: Full=Glycine oxidation system L-factor;
          AltName: Full=LPD-GLC
 gi|1256717|gb|AAA96437.1| lipoamide dehydrogenase [Pseudomonas putida]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|148546905|ref|YP_001267007.1| dihydrolipoamide dehydrogenase [Pseudomonas putida F1]
 gi|148510963|gb|ABQ77823.1| dihydrolipoamide dehydrogenase [Pseudomonas putida F1]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG  TA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTAC----IEKYTDAEGKLALGGT 48


>gi|319939678|ref|ZP_08014037.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811267|gb|EFW07573.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           anginosus 1_2_62CV]
          Length = 510

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
              +DV+V+GGG AG  AA  AA+ G  T ++ 
Sbjct: 206 KEPFDVLVVGGGPAGSSAAIYAARKGIRTGMVV 238


>gi|239626882|ref|ZP_04669913.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239517028|gb|EEQ56894.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 392

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 41/171 (23%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +++  YD+I++GGG AG  AA  A +    T L+                          
Sbjct: 2   VMDSVYDLIIVGGGPAGLSAAIYAGRSERRTLLL-------------------------- 35

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E  +  G +          + + N    P  +    Q   EL+R        S   +++ 
Sbjct: 36  EKGSYGGRI-------NDTYEIRNY---PGTKADSGQHLMELFREHAA----SHPTVELK 81

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           +  V G   E      +  +        +V+L  GT  R +   G+ +   
Sbjct: 82  RTTVTGVRKEDGTFI-VETKRRGNFMARSVILDLGTRPRELDIKGEKEFTG 131


>gi|310778539|ref|YP_003966872.1| HI0933 family protein [Ilyobacter polytropus DSM 2926]
 gi|309747862|gb|ADO82524.1| HI0933 family protein [Ilyobacter polytropus DSM 2926]
          Length = 405

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 145/426 (34%), Gaps = 70/426 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--E 61
           + YD+IVIGGG AG  +A  AAK   S A+         ++     + G GK ++    E
Sbjct: 2   KIYDLIVIGGGPAGIFSAIYAAKKNMSVAI----IEKKNNIGKKILVAGSGKCNVTHQGE 57

Query: 62  IDAL---DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA--DRELYRLAMQREILSQEN 116
           I+      G  G+    A   ++  ++      +G + QA  + +++   M+   +    
Sbjct: 58  INYFLNRYGDHGKFLKNALYNYKPEDLIDFIESKGLKMQALENGKIFPETMRSTDVLNLL 117

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA----- 171
           +  ++       T  ++ISS    +   I     + +    L   I  G    PA     
Sbjct: 118 IKELKKLKVDIFTNNSVISSEKKSETFKIETDKEMFSGKNLL---ISTGGKSYPATGSEG 174

Query: 172 ---------GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
                    G   ++P  +L   +                  D   + + K + +   E 
Sbjct: 175 DGYKLAQMFGHSIEAPRPALTTVY-----------VNDYPYADLSGVSFQKVKIELYREN 223

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
                   D +         T +NL    II  +       +  I   G +    I ++I
Sbjct: 224 KKVKEHCGDVLF--------THSNLSGPGIIDFSRYFLKGDTLFINFTG-KELEDISEEI 274

Query: 283 VRFGERNGHQIFLE-------PEGLNTDVVYPNGISTALPEEIQHQFIRTI--PGLEKVN 333
           +   + NG Q           PE     +   + I   +      +  R +    L K  
Sbjct: 275 IEASKTNGKQSIKRFFSRYNIPERFLKKLFKMHDIDENVKLGELSKADRVLLTKKLSKHE 334

Query: 334 II--RPG-YAIEYDYINPKELFP----TLETKKISGLFLAGQ---INGTTG---YEEAAA 380
            +  R G + +         L      T+E+K +  L+ AG+   I+G TG    + A +
Sbjct: 335 FLISRLGNFDVAMATAGGVSLKEVNQKTMESKLVKKLYFAGELLDIDGDTGGFNIQAACS 394

Query: 381 QGLVAG 386
            G++A 
Sbjct: 395 TGVLAA 400


>gi|262376749|ref|ZP_06069977.1| flavoprotein [Acinetobacter lwoffii SH145]
 gi|262308459|gb|EEY89594.1| flavoprotein [Acinetobacter lwoffii SH145]
          Length = 400

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M ++ YDV+VIG G +G   A +AA+ G    ++         +     + G GK +
Sbjct: 2  MSSKQYDVLVIGAGASGLMTAYMAAQRGRKVVVV----EKANKVGKKILMSGGGKCN 54


>gi|161407957|ref|YP_001073300.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium sp. JLS]
          Length = 563

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDVIV+G G AG  AA  AA  G ST ++
Sbjct: 1  MTGQEYDVIVVGSGAAGMVAALTAAHQGLSTIVV 34


>gi|126237409|gb|ABO00810.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium sp. JLS]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDVIV+G G AG  AA  AA  G ST ++
Sbjct: 24 MTGQEYDVIVVGSGAAGMVAALTAAHQGLSTIVV 57


>gi|315641602|ref|ZP_07896670.1| NADH dehydrogenase [Enterococcus italicus DSM 15952]
 gi|315482643|gb|EFU73171.1| NADH dehydrogenase [Enterococcus italicus DSM 15952]
          Length = 511

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+V+G G AG  AA  AA+ G  T +I 
Sbjct: 210 YDVLVVGAGPAGVSAAIYAARKGIRTGIIA 239


>gi|297812575|ref|XP_002874171.1| hypothetical protein ARALYDRAFT_326701 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320008|gb|EFH50430.1| hypothetical protein ARALYDRAFT_326701 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 503

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPA---IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I          +G +        +  LG    +
Sbjct: 45  DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCL 104

Query: 60  REIDALDGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            EIDA +   +    D         + KK P     R   +  L    ++++  S  N+ 
Sbjct: 105 EEIDAQEAKSLAIYKDGKHATLPFPDDKKFPHEPVGRLLRNGRL-VQRLRQKAASLSNVQ 163

Query: 119 VIQGEVAGFNTEKNIISSI 137
           + +G       E  ++  +
Sbjct: 164 LEEGMAKSLIEENGVVKGV 182


>gi|294776746|ref|ZP_06742210.1| flavoprotein family protein [Bacteroides vulgatus PC510]
 gi|294449401|gb|EFG17937.1| flavoprotein family protein [Bacteroides vulgatus PC510]
          Length = 547

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                      +   N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVAPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVNKILNVFCQHGASTSILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           +  N  +        +  +     EKN I+ I        +   V+L TG   R V    
Sbjct: 199 NMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDV---Y 254

Query: 166 KLKIPAGRMGDSPSNSLFNSFM 187
           +     G   ++   ++     
Sbjct: 255 RWLYDNGIEMETKGIAVGVRLE 276


>gi|212704236|ref|ZP_03312364.1| hypothetical protein DESPIG_02291 [Desulfovibrio piger ATCC 29098]
 gi|212672316|gb|EEB32799.1| hypothetical protein DESPIG_02291 [Desulfovibrio piger ATCC 29098]
          Length = 590

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 108/384 (28%), Gaps = 81/384 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAI--------GGLGKGH 57
           D+++IGGG+AGC  A  AA +  +  +    K   + S +C+  +         G     
Sbjct: 28  DLLIIGGGNAGCFVATEAALVDPNVRVTIMEKAEIMRSGACSAGMDAINTYIPEGKTPED 87

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVK----KGPAVRGPRTQADRELYRLAMQREILS 113
           LVR   A  G      D A    R LN      +   +   R +  R  YR      I  
Sbjct: 88  LVRWSRAQVGGGPLREDLALSNARELNESVDDLERWGLPILRDEQGRIRYRGKWDISIHG 147

Query: 114 QENLDVIQG-------------EVAGFNTEKNIIS-----SIVMQDNSMIRCSTVVLTTG 155
           ++   ++                       +   +      +      + R    V++TG
Sbjct: 148 EQLKPIMAEKALESGADVYNRVTATALIMHEGRCTGAMGFGVRDGKFYIFRAKATVVSTG 207

Query: 156 -------------TFLRGVIHIGKLKIPAGRMGDS---------PSNSLFNSFMKFDFDT 193
                        T     I +    +  G                  +      F    
Sbjct: 208 GAGTLYKSYTADSTDSGAQIWMCPYCVGTGYAIGFRQGAELTSLEQRWVATRTKDFCGPV 267

Query: 194 GRLKTGTPARL---DGKTIIWDKTEKQFADERLIP--FSFMTDKITNRQIECGI--TRTN 246
             +  G  A +    G+ +   + E    D        +   ++    +  C    T   
Sbjct: 268 DTISVGYGAPIINAHGERV-MSRYEHLGGDAAPRYIRANAPMEEWLAGRGPCYCDTTHLT 326

Query: 247 LETHRIIME-NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVV 305
            ET + +ME  +     +   + S G          + R           EP  +     
Sbjct: 327 PETAKAMMEDYLNERPSFVLFLASRG--------QDVTR-----------EPIEIYGSDP 367

Query: 306 YPNGISTALPEEIQHQFIRTIPGL 329
           Y  G  T     +  Q + TIPGL
Sbjct: 368 YILGGHTGGGFWVDMQRMTTIPGL 391


>gi|150004590|ref|YP_001299334.1| NAD-utilizing dehydrogenase [Bacteroides vulgatus ATCC 8482]
 gi|149933014|gb|ABR39712.1| NAD-utilizing dehydrogenase [Bacteroides vulgatus ATCC 8482]
          Length = 547

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 32/202 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                      +   N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVAPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVNKILNVFCQHGASTSILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
           +  N  +        +  +     EKN I+ I        +   V+L TG   R V    
Sbjct: 199 NMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDV---Y 254

Query: 166 KLKIPAGRMGDSPSNSLFNSFM 187
           +     G   ++   ++     
Sbjct: 255 RWLYDNGIEMETKGIAVGVRLE 276


>gi|134291393|ref|YP_001115162.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
 gi|134134582|gb|ABO58907.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
          Length = 436

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 46/169 (27%), Gaps = 28/169 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSMSCN 47
            +D IV+G G +G  AA   AK G                     L       I      
Sbjct: 6   QFDAIVVGAGPSGNAAAYTMAKAGLKVLQIERGEYPGSKNVQGAILYAKALEEI-----I 60

Query: 48  PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           P         L R I      M       G   R  +  K P     R    R  +    
Sbjct: 61  PDFRDDA--PLERHIIEQRLWMLDETSFVGTHVRSDDYNKPP---YNRYTIIRAQFDKWF 115

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG 155
             ++     L + +  V     + + +  +   ++   +    V+L  G
Sbjct: 116 SSKVREAGALVICETTVNHLILDGDQVVGVQCDREQGDVYADVVILADG 164


>gi|313126948|ref|YP_004037218.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
 gi|312293313|gb|ADQ67773.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
          Length = 355

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGLGKG 56
           SYDV+VIGGG AG + A   A+LG  TA++            T   +     + G    
Sbjct: 8  ESYDVVVIGGGPAGLQTALYTARLGHDTAVVDRGGGRAAMMLDTHNVIGVTEEVSGNELL 67

Query: 57 HLVREI 62
             RE 
Sbjct: 68 QTAREQ 73


>gi|77163651|ref|YP_342176.1| dihydrolipoamide dehydrogenase [Nitrosococcus oceani ATCC 19707]
 gi|254435455|ref|ZP_05048962.1| dihydrolipoamide dehydrogenase [Nitrosococcus oceani AFC27]
 gi|76881965|gb|ABA56646.1| dihydrolipoamide dehydrogenase [Nitrosococcus oceani ATCC 19707]
 gi|207088566|gb|EDZ65838.1| dihydrolipoamide dehydrogenase [Nitrosococcus oceani AFC27]
          Length = 480

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  YDV++IG G AG  AA   A+LG  TA          +    PA+GG 
Sbjct: 1  MSERYDVVIIGAGPAGYTAAIRCAQLGLQTAC----IDKWIAADGRPALGGT 48


>gi|33600888|ref|NP_888448.1| putative secreted oxidoreductase [Bordetella bronchiseptica RB50]
 gi|33568488|emb|CAE32400.1| putative secreted oxidoreductase [Bordetella bronchiseptica RB50]
          Length = 375

 Score = 47.2 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHLVR 60
          ++YDV+V+G G  G   A  AA+ G S A+I       G+   N     + G   G + R
Sbjct: 2  KTYDVVVVGAGMLGIAHAWAAARRGLSVAVIERSQRAHGATIRNFGQVLVTGQAPGVMAR 61

Query: 61 EIDALDGLMGRVADAAGIQFR 81
                 L   +A  AG   R
Sbjct: 62 HARQSRELWLELAAGAGFHVR 82


>gi|315937149|gb|ADU56156.1| hypothetical protein CA915-35 [uncultured organism CA915]
          Length = 411

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV++ GGG AG   A + A  G    ++              ++       + R
Sbjct: 3   MLVEEFDVVIAGGGPAGSTVATLVAMQGHRVLML--DREVFPRFQVGESLLPATIHRVCR 60

Query: 61  EIDALDGLMGRVADAAGIQFRV-----------LNVKKGPAVRGPRTQADRELYRLAMQR 109
            +   D L       +G  FR             +  +  A      QA+R  +   + R
Sbjct: 61  MLGVTDELAAEFRVKSGGTFRWGSGPQPWNFSFADSPRLTAATSFAYQAERRRFDEILLR 120

Query: 110 EILSQENLDVIQGE-VAGFNTEKNIISSIV 138
               ++ ++V +G  V G     + +  + 
Sbjct: 121 N-AQRKGVEVREGCPVTGVIEGGDRVIGLR 149


>gi|229818817|ref|YP_002880343.1| hypothetical protein Bcav_0317 [Beutenbergia cavernae DSM 12333]
 gi|229564730|gb|ACQ78581.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
          Length = 761

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 78/250 (31%), Gaps = 64/250 (25%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG---------- 56
           D+ V+GGG AG  AA  AA+ GA  AL          +   P +GG              
Sbjct: 23  DLTVVGGGLAGVCAAIGAARQGARVAL----------VQNRPVLGGNSSSEVRVWVCGAT 72

Query: 57  -HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            H V+      G+MG +     ++ +  N    P             + L +   + ++ 
Sbjct: 73  AHGVQHFARETGIMGEL----FVENQFTNPSGNP-----------YYWDLVVLEAVRAEP 117

Query: 116 NLDVIQGE----VAGFNTEKNIISSIVM--QDNSM----IRCSTVVLTTGTFLRGVIHIG 165
           N+ +        V     + +   S V   Q  S           V  TG  L G  H+ 
Sbjct: 118 NITLYLNTDVRSVDASGPDDDRTISSVTGWQMGSERVLRFVSPAFVDATGDGLVG--HLA 175

Query: 166 KLKIPAGR----------MGDSPSNS-LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
                 GR            + P  S L ++ + +  D G      P      +   D  
Sbjct: 176 GAWYRTGRESRETYGESWAPEGPDRSTLGSTILFYSKDAGEPVKFVPP-----SFAVDIA 230

Query: 215 EKQFADERLI 224
           E    D R I
Sbjct: 231 ETSIPDLRPI 240


>gi|121078486|gb|ABM47402.1| FixC [Rhizobium leguminosarum bv. trifolii]
          Length = 435

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 37/200 (18%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G                     L       I  
Sbjct: 1   MKGEKFDAIVVGAGMSGNAAAYAMAMRGLKVLQLERGEYPGSKNVQGAILYADALEKIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
              + A       HLV E       +   A   GI +R  +  +    R  R    R  +
Sbjct: 61  DFRDDAPLER---HLV-EQRFW---IMDGASHTGIHYRSDDFNE---RRPNRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQD-NSMIRCSTVVLTTGTFLRGV 161
                 ++       + +        + +  ++ +        I    VVL  G  + G 
Sbjct: 111 DRWFSAKVREAGCTVLCETLATRLIQDSSGNVTGVCTDRPGGAILADVVVLAEG--VNGF 168

Query: 162 IHIGKLKIPAGRMGDSPSNS 181
           +         GR+ ++P   
Sbjct: 169 LGTL------GRLRETPKPD 182


>gi|303233373|ref|ZP_07320042.1| FAD binding domain protein [Atopobium vaginae PB189-T1-4]
 gi|302480502|gb|EFL43593.1| FAD binding domain protein [Atopobium vaginae PB189-T1-4]
          Length = 640

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+VIG G AG +AA  AAK G   A+ T +T     +S +    G+       E DA D
Sbjct: 9  DVLVIGAGLAGTQAAYCAAKQGLRVAIST-RTHMFSGLSFSNHTWGMRVISPQNEDDADD 67


>gi|262379080|ref|ZP_06072236.1| oxidoreductase [Acinetobacter radioresistens SH164]
 gi|262298537|gb|EEY86450.1| oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 419

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    YDVIVIG G +G   AA+AA+ G    ++         +     + G GK +
Sbjct: 21 MAAAYYDVIVIGAGASGLMLAALAARRGRKVLVV----EKANKVGKKILMSGGGKCN 73


>gi|255318337|ref|ZP_05359572.1| conserved hypothetical protein [Acinetobacter radioresistens
          SK82]
 gi|255304649|gb|EET83831.1| conserved hypothetical protein [Acinetobacter radioresistens
          SK82]
          Length = 399

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    YDVIVIG G +G   AA+AA+ G    ++         +     + G GK +
Sbjct: 1  MAAAYYDVIVIGAGASGLMLAALAARRGRKVLVV----EKANKVGKKILMSGGGKCN 53


>gi|121533680|ref|ZP_01665507.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
 gi|121307671|gb|EAX48586.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
          Length = 458

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YD IV+G G AG  AA   AK G    L+
Sbjct: 30 SKKYDAIVVGAGPAGSTAAYFMAKEGLDVLLL 61


>gi|52550110|gb|AAU83959.1| geranylgeranyl reductase [uncultured archaeon GZfos35A2]
          Length = 385

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIVIG G +G  A+   A  G  T L          +      GG      + ++D
Sbjct: 2   QQYDVIVIGAGPSGAIASKTCAGNGLKTLLFE-----KEGIPRLKLCGGAVSTSALSDLD 56

Query: 64  --ALDGLMGRVADAAGIQFRV----LNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
                 L+ R    A + F+     +  K   A+   R + D  L   A+   +   E  
Sbjct: 57  FGIEKDLIERECYGARVHFKTHQIEVKRKSRLAILVSRDKFDAYLVSKAVDAGVALHE-- 114

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                +      E++ I  +V  +        V+   G
Sbjct: 115 ---AEKATSIKPEQSRI--VVETNKEKYNAKVVIGADG 147


>gi|325510812|gb|ADZ22448.1| NADH oxidase (two distinct flavin oxidoreductase domains)
           [Clostridium acetobutylicum EA 2018]
          Length = 628

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
           VIV+G G  G EAA + A+ G    L+  +   
Sbjct: 490 VIVVGAGLTGSEAALLLARKGKKVTLVDMRPLK 522



 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+VIGGG AG EAA  AAK G    ++  K+  +G
Sbjct: 366 VVVIGGGPAGMEAARDAAKRGHKVIIME-KSDELG 399


>gi|302868339|ref|YP_003836976.1| monooxygenase [Micromonospora aurantiaca ATCC 27029]
 gi|315505281|ref|YP_004084168.1| monooxygenase fad-binding protein [Micromonospora sp. L5]
 gi|302571198|gb|ADL47400.1| monooxygenase FAD-binding [Micromonospora aurantiaca ATCC 27029]
 gi|315411900|gb|ADU10017.1| monooxygenase FAD-binding protein [Micromonospora sp. L5]
          Length = 394

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSC-NPAIGGLGKGHLVRE 61
           YDV+V+G   AG   A + A+ G    L+         + ++    P +  L +  L+  
Sbjct: 2   YDVVVVGARCAGAPTAMLLARQGHRVLLLDRSAFPADKLSTLYIQQPGVARLARWGLLDA 61

Query: 62  IDALD-----GLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           + A        ++  + D    G    +  ++   A R  R+  D  L   A+      +
Sbjct: 62  LRATGCPPLDHVVYELGDVRVEGCCSGIDGIRAAYAPR--RSILDPLLAGAAVDAGAEFR 119

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           ++       V G   E + +  +        R + VV   G
Sbjct: 120 DDCR-----VTGLLWEDDRVVGVRTDRGDE-RAALVVGADG 154


>gi|315231299|ref|YP_004071735.1| thioredoxin reductase [Thermococcus barophilus MP]
 gi|315184327|gb|ADT84512.1| thioredoxin reductase [Thermococcus barophilus MP]
          Length = 329

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 48/175 (27%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV++IG G AG  AA   A+ G  T +I+                             
Sbjct: 16  TWDVVIIGAGPAGYTAAIYTARFGLETIIISKDL-------------------------- 49

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             G M            ++    G       ++ +R +Y    +       N+DVI  EV
Sbjct: 50  -GGNMALT--------DLIENYPGFPEGISGSELNRRMYDQVRKY------NVDVIFDEV 94

Query: 125 AGFN------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                      E      +  ++  + +  TV++  G   R  ++I   K   GR
Sbjct: 95  ERIEKGECPYYEGKCYWMVYTKNGRVYKAKTVIIAVGAEPR-KLNIPGEKELTGR 148


>gi|145591012|ref|YP_001153014.1| thioredoxin-disulfide reductase [Pyrobaculum arsenaticum DSM
          13514]
 gi|145282780|gb|ABP50362.1| Thioredoxin-disulfide reductase [Pyrobaculum arsenaticum DSM
          13514]
          Length = 321

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +   YDVI++G G AG  AA  AA+    T +I+   
Sbjct: 1  MEADYDVIIVGAGIAGLSAALYAARQRLKTLVISKDL 37


>gi|134103331|ref|YP_001108992.1| electron transfer oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004450|ref|ZP_06562423.1| electron transfer oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915954|emb|CAM06067.1| electron transfer oxidoreductase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 432

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 53/185 (28%), Gaps = 45/185 (24%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLV 59
           N   DVIV+G G AG  AA   A+ G    L+   T     +    C   I   G   LV
Sbjct: 11  NEDADVIVVGAGPAGSTAATYLARAGLDVLLLEKSTFPREKV----CGDGITPRGVKQLV 66

Query: 60  ---------------REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY- 103
                          R +  + G +    D         ++   P     R + D +   
Sbjct: 67  DLGVDTREEAGWLHNRGLRVVGGGVTVELD-------WPSLADFPPYGVVRPRNDFDDLL 119

Query: 104 ----RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-----IRCSTVVLTT 154
               + A  R + +      + G V         +  +  +          R   V+   
Sbjct: 120 AGCAKQAGARMVENT----TVTGAVTD--DRTGRVVGVEGKSGPEREPVTYRAPLVLGCD 173

Query: 155 GTFLR 159
           G   R
Sbjct: 174 GVSAR 178


>gi|15896649|ref|NP_349998.1| NADH oxidase [Clostridium acetobutylicum ATCC 824]
 gi|15026495|gb|AAK81338.1|AE007838_2 NADH oxidase (two distinct flavin oxidoreductase domains)
           [Clostridium acetobutylicum ATCC 824]
          Length = 630

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
           VIV+G G  G EAA + A+ G    L+  +   
Sbjct: 492 VIVVGAGLTGSEAALLLARKGKKVTLVDMRPLK 524



 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+VIGGG AG EAA  AAK G    ++  K+  +G
Sbjct: 368 VVVIGGGPAGMEAARDAAKRGHKVIIME-KSDELG 401


>gi|317471857|ref|ZP_07931192.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900630|gb|EFV22609.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
          Length = 665

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T L+  K   +G +S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLLE-KEDHLGGLS 422


>gi|290580767|ref|YP_003485159.1| peroxide-forming NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus mutans NN2025]
 gi|254997666|dbj|BAH88267.1| peroxide-forming NADH oxidase/alkyl hydroperoxidase reductase
           [Streptococcus mutans NN2025]
          Length = 510

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGVKTGLLA 238


>gi|167747041|ref|ZP_02419168.1| hypothetical protein ANACAC_01753 [Anaerostipes caccae DSM 14662]
 gi|167654001|gb|EDR98130.1| hypothetical protein ANACAC_01753 [Anaerostipes caccae DSM 14662]
          Length = 665

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           IN+  +V+VIGGG AG EAA  AA++G +T L+  K   +G +S
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLLE-KEDHLGGLS 422


>gi|166032442|ref|ZP_02235271.1| hypothetical protein DORFOR_02157 [Dorea formicigenerans ATCC
          27755]
 gi|166028165|gb|EDR46922.1| hypothetical protein DORFOR_02157 [Dorea formicigenerans ATCC
          27755]
          Length = 468

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIG G  G  AA  AAKLG  TA+I
Sbjct: 1  MSEKYDVIVIGAGPGGYVAAIKAAKLGFKTAVI 33


>gi|464216|dbj|BAA04825.1| NADH oxidase [Streptococcus mutans]
          Length = 510

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGVKTGLLA 238


>gi|24379224|ref|NP_721179.1| NADH oxidase/alkyl hydroperoxidase reductase peroxide-forming
           [Streptococcus mutans UA159]
 gi|24377137|gb|AAN58485.1|AE014918_3 NADH oxidase/alkyl hydroperoxidase reductase peroxide-forming
           [Streptococcus mutans UA159]
 gi|3062839|dbj|BAA25696.1| NADH oxidase/alkyl hydroperoxidase reductase [Streptococcus mutans]
          Length = 510

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGVKTGLLA 238


>gi|258655232|ref|YP_003204388.1| monooxygenase FAD-binding [Nakamurella multipartita DSM 44233]
 gi|258558457|gb|ACV81399.1| monooxygenase FAD-binding [Nakamurella multipartita DSM 44233]
          Length = 411

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 38/200 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV++ G   AGC AA + A+ G S  L+            +P        H ++
Sbjct: 1   MRRAHFDVVIAGASLAGCTAATLFARQGLSVVLL--------EAHRDPNHYKRACTHFIQ 52

Query: 61  -----EIDALDGLMGRVADAAGIQFRVLNVKK--------GPAVRGPRTQADRELYRLAM 107
                 I  L   +G     AG Q   L++          GPA      +    + R  +
Sbjct: 53  PTAWPTISRLG--LGAAIRQAGGQPNRLSIWTRWGWLDFPGPAGHTGHGEIGVNIRRAQL 110

Query: 108 QREILSQ----ENLDVIQGE-VAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTFLR 159
              + +Q      + V+ G+ V+           +   D           +V   G    
Sbjct: 111 DPLVRAQAAREPRVTVLMGQRVSQVVVRAGRAVGVRAGDPGRETEYFGRLIVGADG---- 166

Query: 160 GVIHIGKLKIPAGRMGDSPS 179
              H  ++    G    SP 
Sbjct: 167 ---HRSRVADAVGPAVTSPH 183


>gi|163802183|ref|ZP_02196078.1| hypothetical protein 1103602000603_AND4_17364 [Vibrio sp. AND4]
 gi|159173988|gb|EDP58798.1| hypothetical protein AND4_17364 [Vibrio sp. AND4]
          Length = 397

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++++DV+VIG G AG   AA A K G    ++ H
Sbjct: 1  MSKNFDVVVIGAGAAGLMCAAEAGKRGRRVLVLDH 35


>gi|27378475|ref|NP_770004.1| hypothetical protein blr3364 [Bradyrhizobium japonicum USDA 110]
 gi|27351623|dbj|BAC48629.1| blr3364 [Bradyrhizobium japonicum USDA 110]
          Length = 418

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 8/150 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++GGG AG  AAAV A+ G   AL+               +  +G   L  E+    
Sbjct: 33  DVAIVGGGLAGSLAAAVLARAGHRVALV----DKRAVYPDEFRVEKIGGPQL--EMFRRL 86

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN-LDVIQGEVA 125
           G +  +A  A    +VLNV++G  V     QA    Y   +        +   +I  EV 
Sbjct: 87  GFIRGLASVACPYDQVLNVREGKVVDVSVGQAYGLPYAGLVAMARGQIPDPSSLIVDEVT 146

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              T  + +  + +     +    VVL TG
Sbjct: 147 AV-TCSDDVQHLELASGRRLNARLVVLATG 175


>gi|330973465|gb|EGH73531.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|330959054|gb|EGH59314.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|330945512|gb|EGH47057.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 113

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|330899188|gb|EGH30607.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 367

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|330888156|gb|EGH20817.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 187

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|302187418|ref|ZP_07264091.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. syringae
          642]
 gi|330980734|gb|EGH78837.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|291534237|emb|CBL07350.1| dihydrolipoamide dehydrogenase [Megamonas hypermegale ART12/1]
          Length = 453

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           ++D+ +IG G AG EAA  AAK G  TALI  K+   G+     C P    L    L RE
Sbjct: 3   NFDLAIIGAGPAGYEAAVFAAKQGLKTALIE-KSELGGTCLNNGCIPTKTLLHTADLYRE 61

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +     ++G    A     + + + K   ++  R    +          ++    + +I+
Sbjct: 62  MTNQADIIGLDYQALSFDMKKMQLHKQDVIQKLREGIAK----------LMKMHKVTIIK 111

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G        ++ I+    +    I    +++ TG+
Sbjct: 112 GCAK--IVGEHEIAIQSDEKVENIEAKNILIATGS 144


>gi|257485472|ref|ZP_05639513.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. tabaci
          ATCC 11528]
 gi|298486518|ref|ZP_07004578.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase /
          Dihydrolipoamide dehydrogenase of pyruvate
          dehydrogenase complex [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298158995|gb|EFI00056.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase /
          Dihydrolipoamide dehydrogenase of pyruvate
          dehydrogenase complex [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|330987444|gb|EGH85547.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331010654|gb|EGH90710.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|255323375|ref|ZP_05364506.1| fumarate reductase flavoprotein subunit [Campylobacter showae
          RM3277]
 gi|255299412|gb|EET78698.1| fumarate reductase flavoprotein subunit [Campylobacter showae
          RM3277]
          Length = 672

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  + YD +VIGGG AG  AA  A + G ST +++ 
Sbjct: 1  MNVKYYDALVIGGGLAGLRAAVAAGERGLSTVVLSL 36


>gi|237803496|ref|ZP_04591081.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331025478|gb|EGI05534.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|240144475|ref|ZP_04743076.1| NADH:flavin oxidoreductase [Roseburia intestinalis L1-82]
 gi|257203509|gb|EEV01794.1| NADH:flavin oxidoreductase [Roseburia intestinalis L1-82]
          Length = 666

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAE 417


>gi|213968182|ref|ZP_03396327.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Pseudomonas syringae pv. tomato T1]
 gi|301383813|ref|ZP_07232231.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302059591|ref|ZP_07251132.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. tomato
          K40]
 gi|302133380|ref|ZP_07259370.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213927162|gb|EEB60712.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Pseudomonas syringae pv. tomato T1]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|157693262|ref|YP_001487724.1| succinate dehydrogenase flavoprotein subunit [Bacillus pumilus
           SAFR-032]
 gi|157682020|gb|ABV63164.1| succinate dehydrogenase flavoprotein subunit [Bacillus pumilus
           SAFR-032]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 184/618 (29%), Gaps = 129/618 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAEAGTAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPYEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG 155
                    +   +  Q    V + EVAG  T  E       V+ D  + R       T 
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRYEVAGLVTKYEGWEFLGAVLDDEEVCRGIVAQNLTT 181

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
             +        +    G       +   NS +        +        +G+ I    T 
Sbjct: 182 MEIESFRSDAVIMATGGPGIVFGKS--TNSMINTGSAASIVYQQGAHYANGEFIQIHPTA 239

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
               D++L   S        R      T  + +    + E                P Y 
Sbjct: 240 I-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYG 280

Query: 276 PSIEDKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK-- 331
             +   I     R    + +E + G+N  ++VY + +S   P+E+  +    I   EK  
Sbjct: 281 NLVPRDI---ATREIFDVCVEQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFM 336

Query: 332 --------VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN--------- 370
                   + I  P  A+ Y      ++  ++        I GLF AG+ +         
Sbjct: 337 GDDPRKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSMHGGNRL 387

Query: 371 GTTGYEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMI 412
           G      A   G+VAG N+ +  +                    +   +    S  G   
Sbjct: 388 GANSLLSAIYGGMVAGPNAVKYISGLEKSAEDLSSATFDSAVKKEQEKWDNILSMDGTEN 447

Query: 413 DDLTSKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQE 470
             +  K + E      +   Y    L+ D     L     ++          + A + ++
Sbjct: 448 AYVLHKELGEWMTDNVTVVRYNDKLLKTDQKIEELMERYKQININDTASWSNQGAAFTRQ 507

Query: 471 YNFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS-----------YPDFSIQNL 518
            + +  L + + + +     S    +K D   R   EFL             P F  +++
Sbjct: 508 LDNMLQLARVITIGAYNRNESRGAHYKPDFPERNDEEFLKTTMATFKGKNQKPAFHYEDV 567

Query: 519 FS--ICPDARKFSSLVIE 534
               I P  R +S   +E
Sbjct: 568 DVSLIAPRKRDYSKKKVE 585


>gi|126653142|ref|ZP_01725266.1| hypothetical protein BB14905_15385 [Bacillus sp. B14905]
 gi|126590058|gb|EAZ84184.1| hypothetical protein BB14905_15385 [Bacillus sp. B14905]
          Length = 165

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I   YDVIVIGG   G  AA  +A+ GA T L+
Sbjct: 50 IESEYDVIVIGGEPEGVAAAVASARNGAKTLLV 82


>gi|28869403|ref|NP_792022.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|28852644|gb|AAO55717.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|330967008|gb|EGH67268.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          actinidiae str. M302091]
 gi|331018595|gb|EGH98651.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|71735506|ref|YP_274206.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|289624399|ref|ZP_06457353.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|289646687|ref|ZP_06478030.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|71556059|gb|AAZ35270.1| 2-oxoglutarate dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Pseudomonas syringae pv. phaseolicola
          1448A]
 gi|320324898|gb|EFW80970.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. glycinea
          str. B076]
 gi|320329264|gb|EFW85261.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. glycinea
          str. race 4]
 gi|330867447|gb|EGH02156.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|66045251|ref|YP_235092.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. syringae
          B728a]
 gi|63255958|gb|AAY37054.1| Dihydrolipoamide dehydrogenase [Pseudomonas syringae pv. syringae
          B728a]
          Length = 478

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKL 43


>gi|240146289|ref|ZP_04744890.1| pyridine nucleotide-disulphide oxidoreductase [Roseburia
           intestinalis L1-82]
 gi|257201593|gb|EEU99877.1| pyridine nucleotide-disulphide oxidoreductase [Roseburia
           intestinalis L1-82]
 gi|291536166|emb|CBL09278.1| Predicted flavoproteins [Roseburia intestinalis M50/1]
          Length = 427

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 135/440 (30%), Gaps = 71/440 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V VIGGG +G  A+  +A  GA T ++ H    +G         G GK +   E+  L 
Sbjct: 5   EVAVIGGGASGLMASIASALAGADTIILEH-MDRVG---KKILATGNGKCNYTNEVQGLS 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE--- 123
              G     A   FR  + KK  A         +            +   LDV++ E   
Sbjct: 61  CYRGENPAFAVPVFRQFDQKKTVAFFREIGIEPKIKNGYYYPASEQAASVLDVLRMEAAY 120

Query: 124 --VAGFNTEKNIISS-------IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
             V    + +            I        R  +++  TG F           +P    
Sbjct: 121 TGVKEIVSCEIKAIKRQGDFFLIRTGTGD-FRAKSIIFATGLFASPKSGSDGSALPYIEH 179

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLD---GKTIIWDKTEKQFADERLIPFSFMTD 231
                  +  + +         K     R +      I   +T ++  + +L  +     
Sbjct: 180 FGHHIIDIVPALVPLQCRQSFFKMLAGIRAEVSIRLYINGAETTRERGELQLTDYGISGI 239

Query: 232 KITNRQIECGITRTNLETHRIIME-NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
            +   QI    TR   +  ++  + +      +         R+C +          ++ 
Sbjct: 240 PVF--QISRYATRALKQKKQVYAQIDFMPDRSFGEVNDLLKLRFCMNAH-------GKDA 290

Query: 291 HQIFLEPEGLNTDVVYPN--GI-----STALPEEIQHQFIRTIPGLE----------KVN 333
            Q  +         V     GI     S  +PE+   +  + +  L           +  
Sbjct: 291 SQAMIGLCNKKLAEVLLKEAGIDLHIPSKKVPEKQLTRLTKLLKDLRVDITGSKDIAQAQ 350

Query: 334 IIRPGYAIEYDYINPKELF-PTLETKKISGLFLAGQ------ING--------TTGYEEA 378
           +   G       ++ +E+   ++ +K I GLF AG+      I G        ++GY   
Sbjct: 351 VCAGG-------VDTREIDAASMMSKLIPGLFFAGEVVDIDGICGGYNLQWAWSSGYVAG 403

Query: 379 AAQGLVA--GINSARKSNKL 396
           +  G  A  G  + RK    
Sbjct: 404 SHAGEYAHPGKKAHRKKRGN 423


>gi|160892580|ref|ZP_02073370.1| hypothetical protein CLOL250_00109 [Clostridium sp. L2-50]
 gi|156865621|gb|EDO59052.1| hypothetical protein CLOL250_00109 [Clostridium sp. L2-50]
          Length = 416

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 120/412 (29%), Gaps = 72/412 (17%)

Query: 24  AAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA---LDGL------MGRVAD 74
           AA+ G    L       +G       I G G+ +L    DA      +      M     
Sbjct: 20  AAENGCEVVLFEKN-DRLG---KKLFITGKGRCNLTNAGDADRFFQSVTTNSKFMYSPFY 75

Query: 75  AAGIQFRVLNVKK-GPAVRGPRTQADRELYR---------LAMQREILSQENLDVIQGEV 124
               Q  +   +K G   +  R   DR             +   +   +QE +  +Q EV
Sbjct: 76  TFDNQMTIDFFEKLGLKTKVERG--DRVFPVSDHSSDVIGVLKTKLNRNQEIIVELQTEV 133

Query: 125 AGFNTEKNIISSI--VMQDNSM-IRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDS 177
                E  ++  +          +    VV+TTG              +    AG     
Sbjct: 134 QKLIIEDQVVKGVQIKTAHGKKDVYGDAVVITTGGISYPLTGSTGDGYRFAESAGHTIKE 193

Query: 178 PSNSLFN-SFMKFDFD--TGRLKTGTPARLDG-KTIIWDKTEK----QFADERL--IPFS 227
              SL              G         +   K  ++++  +     F       I  S
Sbjct: 194 LLPSLVPFELKDEFCKELMGLSLKNVELVIKCGKKCLFEEQGELLFTHFGISGPLVIKAS 253

Query: 228 FMTDKITNRQIECGITRTNLETHRIIMENIKH--SAIYSGDIK-SYGPRYCPSIEDKIVR 284
               K  ++ +   I      T  ++ + I    S   + D   S G      + D +++
Sbjct: 254 AYLHKYLDKDLSMYIDLKPAMTEEMLDDRILRDFSKYANKDFHNSLGDLLPVKLIDVVIK 313

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
               +      +     T     N + T L +       R + G E+  I + G  ++ +
Sbjct: 314 RSGID----PYKKVNSITKEERKN-LVTVLKQFTLS--FRGLRGFEEAIITKGGVNVK-E 365

Query: 345 YINPKELFPTLETKKISGLFLAG--------------QINGTTGYEEAAAQG 382
            +       T+++K +  L+ AG              QI  +TGY    A  
Sbjct: 366 VVPS-----TMQSKLVDHLYFAGEVLDVDALTGGFNLQIAWSTGYLAGLACS 412


>gi|225630478|ref|YP_002727269.1| Dihydrolipoamide dehydrogenase E3 component [Wolbachia sp. wRi]
 gi|225592459|gb|ACN95478.1| Dihydrolipoamide dehydrogenase E3 component [Wolbachia sp. wRi]
          Length = 456

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 23/184 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKG----H 57
            YD+IVIGGG  G + A  AAKLG   A I   +   G+   + C P+   L       H
Sbjct: 3   DYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAH 62

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-----L 112
              ++  L     ++ DA+     +L  K        +      L+ L    +I      
Sbjct: 63  TKNDLSKLG---IKIKDASFDLKEMLGYKDARVQELGKG--IEYLFNLHKITKINGLASF 117

Query: 113 SQENLDV-IQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            Q NL+V ++G+V    T+  +I++   ++      I    ++ +TG      +    + 
Sbjct: 118 DQGNLEVSVEGKV--LKTKNIVIATGSDVISLPGINIDEKNIISSTGALSLTEVPKKLVV 175

Query: 169 IPAG 172
           I AG
Sbjct: 176 IGAG 179


>gi|168700165|ref|ZP_02732442.1| probable alkylhalidase [Gemmata obscuriglobus UQM 2246]
          Length = 437

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 19/169 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-- 60
           + S DV VIGGG AG   + + A+ GA   L               ++       L R  
Sbjct: 4   DSSVDVAVIGGGPAGSTVSTLLAQRGAKVRLFE--RDQFPRFHIGESLIPETYDVLKRLN 61

Query: 61  ---EIDALDGLMGRVADAAGIQFRV-----LNVKKGPAVRGPRTQADRELYRLAMQREIL 112
              ++ A   +          Q ++      +  K P  R    Q  R  +   M     
Sbjct: 62  MLPKMKASGFVKKYSVQFVNAQGKMSAPFYFDENK-PGERSQTWQVVRSEFDTMMLDNAR 120

Query: 113 SQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS----MIRCSTVVLTTGT 156
               +DV Q   V     E +    + +Q        +R   VV  +G 
Sbjct: 121 KH-GVDVRQPARVLEVLFEGDRAVGVKVQKEGGGSEEVRAKVVVDASGQ 168


>gi|58697099|ref|ZP_00372543.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
           dehydrogenase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536615|gb|EAL59940.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
           dehydrogenase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 191

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 23/184 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKG----H 57
            YD+IVIGGG  G + A  AAKLG   A I   +   G+   + C P+   L       H
Sbjct: 3   DYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAH 62

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI-----L 112
              ++  L     ++ DA+     +L  K        +      L+ L    +I      
Sbjct: 63  TKNDLSKLG---IKIKDASFDLKEMLGYKDARVQELGKG--IEYLFNLHKITKINGLASF 117

Query: 113 SQENLDV-IQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            Q NL+V ++G+V    T+  +I++   ++      I    ++ +TG      +    + 
Sbjct: 118 DQGNLEVSVEGKV--LKTKNIVIATGSDVISLPGINIDEKNIISSTGALSLTEVPKKLVV 175

Query: 169 IPAG 172
           I AG
Sbjct: 176 IGAG 179


>gi|325964264|ref|YP_004242170.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470351|gb|ADX74036.1| NADH dehydrogenase, FAD-containing subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 417

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 44/155 (28%), Gaps = 47/155 (30%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  SY VIVIG G AG  AA    + G    L      +       P +  +    +   
Sbjct: 1   MEDSYQVIVIGAGFAGISAAKELGRKGVRVLL----IDSNNYHQFQPLLYQVATSQV--- 53

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G+   +A      FR L                                N+ V+ 
Sbjct: 54  -----GVSA-IARPIRSVFRRLR-------------------------------NVRVLT 76

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EVA  +   + ++          R   +V+  G 
Sbjct: 77  AEVAAIDAANHTVT---TAGGDTFRAGILVVAVGA 108


>gi|291540955|emb|CBL14066.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Roseburia
           intestinalis XB6B4]
          Length = 666

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           IN+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 INKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAE 417


>gi|255689985|ref|ZP_05413660.1| alkyl hydroperoxide reductase, F subunit [Bacteroides finegoldii
           DSM 17565]
 gi|260624592|gb|EEX47463.1| alkyl hydroperoxide reductase, F subunit [Bacteroides finegoldii
           DSM 17565]
          Length = 516

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 81/271 (29%), Gaps = 47/271 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDVIV GGG AG  +A  + + G   A++      IG          +G  +L+    
Sbjct: 210 KEYDVIVAGGGPAGVSSAIYSVRKGLRVAIVA---ERIGGQVKET----VGIENLISVPK 262

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                +                         R   D   +R      I   E L      
Sbjct: 263 TTGNELANNL----------------KTHLLRYPVDLLEHRK-----IEKVEVL------ 295

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                  K  I  +            +++ TG   R  +++       GR      +   
Sbjct: 296 ------GKQKI--VTTSVGEKFLAPALIIATGASWR-KLNVPGEAEYIGRGVAFCPHCDG 346

Query: 184 NSFM-KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
             +  K     G   +G  A +D   I   K       + L   S + D++  + +    
Sbjct: 347 PFYKGKHVAVVGGGNSGIEAAIDLAGI-CSKVTVFEFMDELKADSVLQDRL--KSLPNVE 403

Query: 243 TRTNLETHRIIMENIKHSAIYSGDIKSYGPR 273
              + +T  +I    K +A+   D K+   R
Sbjct: 404 VFVSSQTTEVIGNGDKLTALRIKDRKTEEER 434


>gi|254481350|ref|ZP_05094595.1| oxidoreductase, FAD/FMN-binding family [marine gamma
           proteobacterium HTCC2148]
 gi|214038513|gb|EEB79175.1| oxidoreductase, FAD/FMN-binding family [marine gamma
           proteobacterium HTCC2148]
          Length = 693

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +++++GGG AG EAA +AA+ G    L        G +    ++ GL 
Sbjct: 391 NILIVGGGPAGLEAALIAARRGYQVTLAEKAPEFGGRLRFETSLPGLA 438


>gi|87310440|ref|ZP_01092570.1| probable phytoene dehydrogenase [Blastopirellula marina DSM 3645]
 gi|87286939|gb|EAQ78843.1| probable phytoene dehydrogenase [Blastopirellula marina DSM 3645]
          Length = 483

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YDV+VIG G AG  AA   A+ G S  L    
Sbjct: 13 YDVVVIGSGLAGMTAANTLARAGRSVLLCEQH 44


>gi|291559361|emb|CBL38161.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family
           [butyrate-producing bacterium SSC/2]
          Length = 665

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +N+  +V+VIGGG AG EAA  AA++G +T L    
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLFEKN 415


>gi|222151929|ref|YP_002561089.1| hypothetical protein MCCL_1686 [Macrococcus caseolyticus JCSC5402]
 gi|222121058|dbj|BAH18393.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 466

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 25/160 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
           M N+ YDVI IG GHA    A +  ++    A+I      I     +  CNP I   G  
Sbjct: 1   MNNKHYDVIYIGSGHAAWHGALILNQMKKRVAIIE--KDKIAGTCTNYGCNPKILLEGPF 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +  +     ++             +N  K         + +          +I   + 
Sbjct: 59  EAIESLKHYGDIV--------DTLPQVNWSK-----LMDYKRETINPMHEGLEQIFKDQG 105

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +D+I+GE  G   + + +S     D +      +VL TG 
Sbjct: 106 IDIIKGE--GLLKDAHTVS----VDGTEYHAKFIVLATGQ 139


>gi|167767338|ref|ZP_02439391.1| hypothetical protein CLOSS21_01857 [Clostridium sp. SS2/1]
 gi|167711313|gb|EDS21892.1| hypothetical protein CLOSS21_01857 [Clostridium sp. SS2/1]
          Length = 642

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +N+  +V+VIGGG AG EAA  AA++G +T L    
Sbjct: 357 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLFEKN 392


>gi|33597043|ref|NP_884686.1| putative secreted oxidoreductase [Bordetella parapertussis 12822]
 gi|33566494|emb|CAE37750.1| putative secreted oxidoreductase [Bordetella parapertussis]
          Length = 375

 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHLVR 60
          ++YDV+V+G G  G   A  AA+ G S A++       G+   N     + G   G + R
Sbjct: 2  KTYDVVVVGAGMLGIAHAWAAARRGLSVAVVERSQRAHGATIRNFGQVLVTGQAPGVMAR 61

Query: 61 EIDALDGLMGRVADAAGIQFR 81
                 L   +A  AG   R
Sbjct: 62 HARQSRELWLELAAGAGFHVR 82


>gi|29840723|ref|NP_829829.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila caviae
           GPIC]
 gi|29835073|gb|AAP05707.1| succinate dehydrogenase, flavoprotein subunit [Chlamydophila caviae
           GPIC]
          Length = 627

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 99/326 (30%), Gaps = 55/326 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +S  VIV+GGG AG  AA   A  G    LI+          C    G     +L +
Sbjct: 1   MEAQSCRVIVVGGGLAGLSAAMKLADHGIVVDLISLTKVKRSHSVCAQG-GINAALNLKQ 59

Query: 61  E------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E      I A D + G   D    Q  VL +    A R  R     + +     R     
Sbjct: 60  EEADSPYIHAYDTIKG--GDFLADQPPVLEMC-LAAPRIIRML---DNFGCPFNR----T 109

Query: 115 EN--LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI--- 169
            N  LDV +    G    + +          M      V    +  +G ++  +      
Sbjct: 110 PNGELDVRRF--GGTLYHRTVFCGASTGQQLMYTLDEQVRRRES--QGRVNKFENHEFVR 165

Query: 170 ----PAGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
                AGR       +LF N       D   + TG P  +   +                
Sbjct: 166 LITNSAGRTCGVVLMNLFNNRLEVLKGDAVIVATGGPGVIFKMSTNST------------ 213

Query: 225 PFSFMTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIED 280
              F T     R    G+T  N E  +I    +  I    + S  ++  G R + P    
Sbjct: 214 ---FCTGAANGRLFLQGMTYANPEFIQIHPTAIPGIDKLRLISESVRGEGGRVWVPGDAS 270

Query: 281 KIVRFGERNGHQIFLEPEGLNTDVVY 306
           K + F + +       P G      Y
Sbjct: 271 KTIIFPDGSR-----RPCGETGKPWY 291


>gi|73669113|ref|YP_305128.1| hypothetical protein Mbar_A1602 [Methanosarcina barkeri str.
          Fusaro]
 gi|85681848|sp|P96800|Y1602_METBF RecName: Full=Uncharacterized protein Mbar_A1602; AltName:
          Full=ORF3
 gi|72396275|gb|AAZ70548.1| hypothetical protein Mbar_A1602 [Methanosarcina barkeri str.
          Fusaro]
          Length = 387

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1  MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          MI+ + YDV++IG G AG  AA + AK   +  +              P  GG
Sbjct: 1  MISMKKYDVVIIGAGPAGSYAAYMLAKSKINVLV----IDKYSFPRYKPCAGG 49


>gi|1890201|emb|CAA70994.1| hypothetical protein [Methanosarcina barkeri]
          Length = 282

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1  MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          MI+ + YDV++IG G AG  AA + AK   +  +              P  GG
Sbjct: 1  MISMKKYDVVIIGAGPAGSYAAYMLAKSKINVLV----IDKYSFPRYKPCAGG 49


>gi|297154505|gb|ADI04217.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
          Length = 517

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD +++GGGH G  AAA  A+ G    L+  +    G  + +          L R    +
Sbjct: 7  YDAVIVGGGHNGLVAAAYLARAGRRVLLME-RLDHTGGAAVSTRPFAGVDARLSRYSYLV 65

Query: 66 DGLMGRVADAAGIQFRVLNV---KKGPAVRGPR 95
            L  R+ D  G++F V         PAVR  R
Sbjct: 66 SLLPRRIVDDLGLRFSVAKRTVSSYTPAVRAGR 98


>gi|269302579|gb|ACZ32679.1| succinate dehydrogenase, flavoprotein subunit [Chlamydophila
           pneumoniae LPCoLN]
          Length = 626

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 96/324 (29%), Gaps = 53/324 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +  VIV+GGG AG  AA   A LG    L++          C    G     +L  E
Sbjct: 1   MDENRKVIVVGGGLAGLSAAMQLANLGIIVELVSLTKVKRSHSVCAQG-GINAALNLKPE 59

Query: 62  ------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ- 114
                 + A D + G   D    Q  VL +            A R +  L       ++ 
Sbjct: 60  EEDSPYVHAYDTIKG--GDFLADQPPVLEMC---------LAAPRIIKMLDNFGCPFNRG 108

Query: 115 --ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV---LTTGTFLRGVIH--IGKL 167
              NLDV +    G    + +          M      V      G  ++   H  +  +
Sbjct: 109 PSGNLDVRRF--GGTLYHRTVFCGASTGQQLMYTLDEQVRRREHAGRVIKRENHEFVRLV 166

Query: 168 KIPAGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
              +GR       +LF N       D   + TG P  +   +                  
Sbjct: 167 TDHSGRACGIILMNLFNNRLEILRGDAVIIATGGPGVIFKMSTNST-------------- 212

Query: 227 SFMTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIEDKI 282
            F T     R    G+   N E  +I    +       + S  ++  G R + P    K 
Sbjct: 213 -FCTGAANGRLFLQGMAYANPEFIQIHPTAIPGRDKLRLISESVRGEGGRVWVPGDSSKR 271

Query: 283 VRFGERNGHQIFLEPEGLNTDVVY 306
           + F +         P G      Y
Sbjct: 272 IVFPD-----GSERPCGETGAPWY 290


>gi|15618698|ref|NP_224984.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           pneumoniae CWL029]
 gi|15836322|ref|NP_300846.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           pneumoniae J138]
 gi|16752252|ref|NP_445620.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           pneumoniae AR39]
 gi|33242148|ref|NP_877089.1| succinate dehydrogenase flavoprotein subunit [Chlamydophila
           pneumoniae TW-183]
 gi|4377099|gb|AAD18927.1| Succinate Dehydrogenase [Chlamydophila pneumoniae CWL029]
 gi|7189997|gb|AAF38855.1| succinate dehydrogenase, flavoprotein subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979162|dbj|BAA98997.1| succinate dehydrogenase [Chlamydophila pneumoniae J138]
 gi|33236658|gb|AAP98746.1| succinate dehydrogenase flavoprotein [Chlamydophila pneumoniae
           TW-183]
          Length = 626

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 96/324 (29%), Gaps = 53/324 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +  VIV+GGG AG  AA   A LG    L++          C    G     +L  E
Sbjct: 1   MDENRKVIVVGGGLAGLSAAMQLANLGIIVELVSLTKVKRSHSVCAQG-GINAALNLKPE 59

Query: 62  ------IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ- 114
                 + A D + G   D    Q  VL +            A R +  L       ++ 
Sbjct: 60  EEDSPYVHAYDTIKG--GDFLADQPPVLEMC---------LAAPRIIKMLDNFGCPFNRG 108

Query: 115 --ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV---LTTGTFLRGVIH--IGKL 167
              NLDV +    G    + +          M      V      G  ++   H  +  +
Sbjct: 109 PSGNLDVRRF--GGTLYHRTVFCGASTGQQLMYTLDEQVRRREHAGRVIKRENHEFVRLV 166

Query: 168 KIPAGRMGDSPSNSLF-NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
              +GR       +LF N       D   + TG P  +   +                  
Sbjct: 167 TDHSGRACGIILMNLFNNRLEILRGDAVIIATGGPGVIFKMSTNST-------------- 212

Query: 227 SFMTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPR-YCPSIEDKI 282
            F T     R    G+   N E  +I    +       + S  ++  G R + P    K 
Sbjct: 213 -FCTGAANGRLFLQGMAYANPEFIQIHPTAIPGRDKLRLISESVRGEGGRVWVPGDSSKR 271

Query: 283 VRFGERNGHQIFLEPEGLNTDVVY 306
           + F +         P G      Y
Sbjct: 272 IVFPD-----GSERPCGETGAPWY 290


>gi|78356508|ref|YP_387957.1| mercuric reductase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
 gi|78218913|gb|ABB38262.1| mercuric reductase, putative [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
          Length = 486

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCNPAIGGLG 54
          M    YD+IVIGGG AG    A AA+LG    L+             G +     +   G
Sbjct: 2  MAKYDYDIIVIGGGAAGLTVTAGAAQLGVKVLLVESGHALGGDCLHYGCVPSKTLLRTAG 61

Query: 55 KGHLVREIDALD 66
            HL+R      
Sbjct: 62 VRHLMRHAARYG 73


>gi|291613980|ref|YP_003524137.1| HI0933 family protein [Sideroxydans lithotrophicus ES-1]
 gi|291584092|gb|ADE11750.1| HI0933 family protein [Sideroxydans lithotrophicus ES-1]
          Length = 391

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 129/437 (29%), Gaps = 94/437 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+++G G AG   A  AA+ G S  L+ H       ++    I G G+ +   
Sbjct: 1   MDANRFDVLIVGAGAAGMMCALTAAQRGRSVLLLDHS----SKLAEKIRISGGGRCNFTN 56

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE--LYRLAMQREIL----SQ 114
                +  + +              +   A+       +R    Y      ++     S+
Sbjct: 57  LNSRPENFLSQNPHFCRSALARFTPQHFIAM------LERHGIGYHEKTLGQLFCDDGSE 110

Query: 115 ENLDVIQGEVAGFNTEKNIISS----------IVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
             + +++ E         +             +V   +   R  ++V+ TG      I  
Sbjct: 111 AIIAMLKSECDAAGVRWCMPCGVEKIERDDEFVVTASHGKYRAESLVIATGGLSIPKIGA 170

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDF---DTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
                        P   L    +   F   +       + A LD   + + K        
Sbjct: 171 TPFGYKLAEQFGVPMTRLKPGLVPLTFHPEEWAAYAELSGASLDA-VVSFGK-------- 221

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDK 281
                                 R N     ++  +   S      I SY   +   +   
Sbjct: 222 -------------------HSFREN-----LLFTHRGLSGPAILQISSY---WEQGMPLS 254

Query: 282 IVRFGERNGHQIFLEPEGLNTDVVY--PNGISTALPEEIQHQFIRTIP------------ 327
           I    + + H++FL+  G    +       +   L E I  Q++   P            
Sbjct: 255 IDLLPDLDAHEMFLQQRGSKMLLGNFLAQYLPKRLAEIIAVQWLENKPLNQYAEKELRTL 314

Query: 328 --GLEKVNII---RPGYA-IEYDY--INPKELFP-TLETKKISGLFLAGQINGTTGYEE- 377
              L+K  II     GY   E     ++ + L   T+E   + GL+  G++   TG    
Sbjct: 315 ADKLKKWQIIPSGTMGYGKAEVTCGGVDTRALSSKTMECNNVPGLYFVGEVMDVTGQLGG 374

Query: 378 -----AAAQGLVAGINS 389
                A A G  AG  +
Sbjct: 375 YNFQWAWASGYAAGQAA 391


>gi|258517347|ref|YP_003193569.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781052|gb|ACV64946.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 647

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           V+V G G AG EAA  AA+ G    L    +   G +     I G GK   +
Sbjct: 384 VLVAGAGPAGLEAAITAARRGHRVVLYERDSEPGGRLKLAARIPGCGKFQSI 435


>gi|219113829|ref|XP_002186498.1| succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum
           CCAP 1055/1]
 gi|209583348|gb|ACI65968.1| succinate dehydrogenase flavoprotein [Phaeodactylum tricornutum
           CCAP 1055/1]
          Length = 638

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 83/252 (32%), Gaps = 54/252 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD +V+G G +G  AA   ++ G  TA +T     ++ T+ +    N A+G +G+
Sbjct: 41  VIDHTYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMGE 100

Query: 56  G-------HLVREIDALDG-----LMGRVADAAGIQFR---------------------- 81
                     V+  D L        M R A  A ++                        
Sbjct: 101 DDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELEEFGMPFSRTEEGKIYQRAFGGQ 160

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREI----LSQENLDVIQGEVAGFNTEKN-IISS 136
            L+  KG         ADR  +  AM   +    L+ +    I+                
Sbjct: 161 SLDFGKGGQAYRCAAAADRTGH--AMLHTLYGRSLAFDTTYFIEYFAMDLLMNDQGECVG 218

Query: 137 IV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF- 189
           +V   M+D ++  I     VL TG + R            G     +    L N   +F 
Sbjct: 219 VVALNMEDGTIHRIHAKNTVLATGGYGRTYFSCTSAHTCTGDGNAMAMRQGLSNQDNEFV 278

Query: 190 -DFDTGRLKTGT 200
               TG    G 
Sbjct: 279 QFHPTGIYGAGC 290


>gi|84687318|ref|ZP_01015197.1| mercuric reductase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664615|gb|EAQ11100.1| mercuric reductase [Rhodobacterales bacterium HTCC2654]
          Length = 485

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 40/166 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREI 62
           SYD+IV+G G AG  A+  AA+ G   AL+ H T   T  ++ C P+             
Sbjct: 22  SYDLIVVGAGSAGFSASITAAEAGKRVALVGHGTIGGTCVNVGCVPSKA----------- 70

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR------------ELYRLAMQRE 110
                 M R A+AA       +  + P +       D             E+        
Sbjct: 71  ------MIRAAEAAHGG---ASAARFPGIASCEHAVDWPAVVKGTTDLVAEMRHKKYIDL 121

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           + + EN+  I+   A        +   V     +I    +++ TG+
Sbjct: 122 LPAYENVTYIEDGPARL------VEGGVAVGGRVISAPRILIATGS 161



 Score = 39.5 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +IV+GGG+ GCE A +A++LG    L+T
Sbjct: 192 IIVLGGGYIGCELAQMASRLGVKVTLVT 219


>gi|84503153|ref|ZP_01001238.1| mercuric reductase [Oceanicola batsensis HTCC2597]
 gi|84388394|gb|EAQ01343.1| mercuric reductase [Oceanicola batsensis HTCC2597]
          Length = 483

 Score = 46.9 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 40/166 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREI 62
           SYD+IV+G G AG  A+  AA+ G   AL+ H T   T  ++ C P+             
Sbjct: 20  SYDLIVVGAGSAGFSASITAAEAGKRVALVGHGTIGGTCVNVGCVPSKA----------- 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR------------ELYRLAMQRE 110
                 M R A+AA       +  + P +       D             E+        
Sbjct: 69  ------MIRAAEAAHGG---ASAARFPGIASCEHAVDWPAVVKGTTDLVAEMRHKKYIDL 119

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           + + EN+  I+   A        +   V     +I    +++ TG+
Sbjct: 120 LPAYENVTYIEDGPARL------VEGGVAVGGRVISAPRILIATGS 159



 Score = 39.5 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +IV+GGG+ GCE A +A++LG    L+T
Sbjct: 190 IIVLGGGYIGCELAQMASRLGVKVTLVT 217


>gi|296120391|ref|YP_003628169.1| HI0933 family protein [Planctomyces limnophilus DSM 3776]
 gi|296012731|gb|ADG65970.1| HI0933 family protein [Planctomyces limnophilus DSM 3776]
          Length = 483

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIV G G AG  AA  AA+LGA   L 
Sbjct: 62 DVIVCGAGPAGVTAAITAARLGARVRLF 89


>gi|218515349|ref|ZP_03512189.1| succinate dehydrogenase flavoprotein subunit [Rhizobium etli
          8C-3]
          Length = 59

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|218462020|ref|ZP_03502111.1| succinate dehydrogenase flavoprotein subunit [Rhizobium etli Kim
          5]
          Length = 378

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|46580247|ref|YP_011055.1| thioredoxin-disulfide reductase [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120602369|ref|YP_966769.1| thioredoxin reductase [Desulfovibrio vulgaris DP4]
 gi|46449664|gb|AAS96314.1| thioredoxin-disulfide reductase [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120562598|gb|ABM28342.1| thioredoxin reductase [Desulfovibrio vulgaris DP4]
 gi|311233768|gb|ADP86622.1| thioredoxin reductase [Desulfovibrio vulgaris RCH1]
          Length = 307

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +D IVIGGG AG  AA   A+ G S A++
Sbjct: 2  QQFDAIVIGGGPAGMTAALYLARSGVSVAMV 32


>gi|317471836|ref|ZP_07931171.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900609|gb|EFV22588.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
          Length = 663

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           I +  +V+VIGGG AG EAA  AA++G ST LI  KT+ +G +       P    LG   
Sbjct: 379 IKKPCNVVVIGGGTAGLEAACTAAEVGCSTVLIE-KTNQLGGLARRVGSMPNKKRLGYFP 437

Query: 58  LVREIDAL 65
             +E  A+
Sbjct: 438 AYQEKRAM 445


>gi|302554658|ref|ZP_07307000.1| monooxygenase [Streptomyces viridochromogenes DSM 40736]
 gi|302472276|gb|EFL35369.1| monooxygenase [Streptomyces viridochromogenes DSM 40736]
          Length = 447

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-------THKT--STIGSMSCNPAIGGL 53
            ++YDV++ G   AGC AA + A+ GA  AL+        HK   +     +  P I  L
Sbjct: 6   TQNYDVVINGASVAGCTAAILYARQGARVALLERRSSMDAHKVLCTHYIQAAAYPVISEL 65

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           G   L   +D +  +           +     + GP V        R+     ++R    
Sbjct: 66  G---LTDALDGIGAIRNSADYWTKWGWIRPEAETGPGVLPHGYSVRRQSLDPLLRRTAAG 122

Query: 114 QENLDVIQG-EVAGFNTEKNIISSI 137
            + +D+  G  V     E    + +
Sbjct: 123 TDGVDLRLGHTVNELLVEDGRTTGV 147


>gi|167747019|ref|ZP_02419146.1| hypothetical protein ANACAC_01731 [Anaerostipes caccae DSM 14662]
 gi|167653979|gb|EDR98108.1| hypothetical protein ANACAC_01731 [Anaerostipes caccae DSM 14662]
          Length = 668

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           I +  +V+VIGGG AG EAA  AA++G ST LI  KT+ +G +       P    LG   
Sbjct: 384 IKKPCNVVVIGGGTAGLEAACTAAEVGCSTVLIE-KTNQLGGLARRVGSMPNKKRLGYFP 442

Query: 58  LVREIDAL 65
             +E  A+
Sbjct: 443 AYQEKRAM 450


>gi|150378171|ref|YP_001314766.1| FAD dependent oxidoreductase [Sinorhizobium medicae WSM419]
 gi|150032718|gb|ABR64833.1| FAD dependent oxidoreductase [Sinorhizobium medicae WSM419]
          Length = 435

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 32/160 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G                     +  +    I  
Sbjct: 1   MTKEKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKNVQGAIMYANMLEAIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRE 101
              N A       HLV E       +       G+ +R  +  +    R    R Q D+ 
Sbjct: 61  DFRNDAPLER---HLV-EQRFW---IMDDTSHTGMHYRSDDFNEVTPNRYTIIRAQFDK- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQ 140
                + R++       + +    G   +       +   
Sbjct: 113 ----WLSRKVCEAGGTVLCETTATGLEWDSAGKAIGVRTD 148


>gi|15802111|ref|NP_288133.1| hypothetical protein Z2728 [Escherichia coli O157:H7 EDL933]
 gi|15831660|ref|NP_310433.1| hypothetical protein ECs2406 [Escherichia coli O157:H7 str.
          Sakai]
 gi|168751889|ref|ZP_02776911.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4113]
 gi|168756698|ref|ZP_02781705.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4401]
 gi|168762239|ref|ZP_02787246.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4501]
 gi|168770458|ref|ZP_02795465.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4486]
 gi|168775003|ref|ZP_02800010.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4196]
 gi|168782112|ref|ZP_02807119.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4076]
 gi|168789834|ref|ZP_02814841.1| protein FixC homolog [Escherichia coli O157:H7 str. EC869]
 gi|168800122|ref|ZP_02825129.1| protein FixC homolog [Escherichia coli O157:H7 str. EC508]
 gi|195937383|ref|ZP_03082765.1| hypothetical protein EscherichcoliO157_13187 [Escherichia coli
          O157:H7 str. EC4024]
 gi|208810646|ref|ZP_03252522.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4206]
 gi|208816953|ref|ZP_03258073.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4045]
 gi|208821272|ref|ZP_03261592.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4042]
 gi|209396032|ref|YP_002270769.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4115]
 gi|217328615|ref|ZP_03444696.1| protein FixC homolog [Escherichia coli O157:H7 str. TW14588]
 gi|254793316|ref|YP_003078153.1| hypothetical protein ECSP_2266 [Escherichia coli O157:H7 str.
          TW14359]
 gi|261227856|ref|ZP_05942137.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258411|ref|ZP_05950944.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli O157:H7 str. FRIK966]
 gi|291282829|ref|YP_003499647.1| putative sulfate transport protein CysZ [Escherichia coli O55:H7
          str. CB9615]
 gi|12515707|gb|AAG56686.1|AE005393_3 flavoprotein; probably electron transport [Escherichia coli
          O157:H7 str. EDL933]
 gi|13361873|dbj|BAB35829.1| flavoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|187769364|gb|EDU33208.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4196]
 gi|188014127|gb|EDU52249.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4113]
 gi|189000287|gb|EDU69273.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4076]
 gi|189356192|gb|EDU74611.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4401]
 gi|189360634|gb|EDU79053.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4486]
 gi|189367507|gb|EDU85923.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4501]
 gi|189370585|gb|EDU89001.1| protein FixC homolog [Escherichia coli O157:H7 str. EC869]
 gi|189377570|gb|EDU95986.1| protein FixC homolog [Escherichia coli O157:H7 str. EC508]
 gi|208725162|gb|EDZ74869.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4206]
 gi|208731296|gb|EDZ79985.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4045]
 gi|208741395|gb|EDZ89077.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4042]
 gi|209157432|gb|ACI34865.1| protein FixC homolog [Escherichia coli O157:H7 str. EC4115]
 gi|209769018|gb|ACI82821.1| flavoprotein [Escherichia coli]
 gi|209769020|gb|ACI82822.1| flavoprotein [Escherichia coli]
 gi|209769022|gb|ACI82823.1| flavoprotein [Escherichia coli]
 gi|209769024|gb|ACI82824.1| flavoprotein [Escherichia coli]
 gi|209769026|gb|ACI82825.1| flavoprotein [Escherichia coli]
 gi|217317962|gb|EEC26389.1| protein FixC homolog [Escherichia coli O157:H7 str. TW14588]
 gi|254592716|gb|ACT72077.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Escherichia coli O157:H7 str. TW14359]
 gi|290762702|gb|ADD56663.1| putative sulfate transport protein CysZ [Escherichia coli O55:H7
          str. CB9615]
 gi|320188386|gb|EFW63048.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Escherichia coli O157:H7 str. EC1212]
 gi|320641914|gb|EFX11282.1| oxidoreductase [Escherichia coli O157:H7 str. G5101]
 gi|320647371|gb|EFX16179.1| oxidoreductase [Escherichia coli O157:H- str. 493-89]
 gi|320652665|gb|EFX20934.1| oxidoreductase [Escherichia coli O157:H- str. H 2687]
 gi|320653048|gb|EFX21244.1| oxidoreductase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658733|gb|EFX26410.1| oxidoreductase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668723|gb|EFX35528.1| oxidoreductase [Escherichia coli O157:H7 str. LSU-61]
 gi|326342065|gb|EGD65846.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Escherichia coli O157:H7 str. 1044]
 gi|326343618|gb|EGD67380.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Escherichia coli O157:H7 str. 1125]
          Length = 429

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMARAGLDILV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|330875694|gb|EGH09843.1| dihydrolipoamide dehydrogenase [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 478

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G  G  AA  AA+LG  TA I       G +
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGRL 43


>gi|311069336|ref|YP_003974259.1| succinate dehydrogenase flavoprotein subunit [Bacillus atrophaeus
           1942]
 gi|310869853|gb|ADP33328.1| succinate dehydrogenase flavoprotein subunit [Bacillus atrophaeus
           1942]
          Length = 586

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 104/596 (17%), Positives = 182/596 (30%), Gaps = 119/596 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGTAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + DAA     +++       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCDAAPSIIHLMDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIVFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK------ 331
             I     R    + +  + G+N  ++VY + +S   P+E+  +    I   EK      
Sbjct: 285 RDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGDDP 340

Query: 332 ----VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------GTTG 374
               + I  P  A+ Y      ++  ++        I GLF AG+ +         G   
Sbjct: 341 RKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSMHGGNRLGANS 391

Query: 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGV--------MIDDLTSKGVLEPYRM 426
              A   G+VAG N+ +  N L+      + +              + ++  G    Y +
Sbjct: 392 LLSAIYGGMVAGPNAVKYVNGLESSVEDMSSALFDAHTKKEEEKWANIMSMDGDENAYVL 451

Query: 427 FTSRAE-----------YRISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFL 474
                E               L+ D+    L     K+      +   + A + ++ + +
Sbjct: 452 HRELGEWMTANVTVVRHNDKLLKTDDKIQELMERYQKININDTTKWSNQGAMFTRQLSNM 511

Query: 475 RSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSY-----------PDFSIQNL 518
             L + + L +     S    +K D   R   E+L             P+F  Q++
Sbjct: 512 LQLARVITLGAYNRNESRGAHYKPDYPERNDDEWLKTTMAKHVGQFEAPEFDYQDV 567


>gi|149178133|ref|ZP_01856728.1| hypothetical protein PM8797T_14399 [Planctomyces maris DSM 8797]
 gi|148843053|gb|EDL57421.1| hypothetical protein PM8797T_14399 [Planctomyces maris DSM 8797]
          Length = 481

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IGGG +G  AA   A+L +    I         +    A G   + HL+        
Sbjct: 4   VAIIGGGFSGTMAAVNLARLSSGPLCIQLINDKY-PLGRGVAYGTRREEHLLNVAARNMS 62

Query: 68  LMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQEN---------L 117
                A+      R  ++    P  +   T   R +Y   ++  + +            +
Sbjct: 63  AAPDHANHFLDWLRTRVDYSDLPDPQLRETYVPRRIYGDYLRSILATYMQPIDQHHPAEI 122

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            VI+ E           + I ++D S I    V+L TG 
Sbjct: 123 QVIEQEAVDIEFNFVGTAEITLKDGSTIDADRVLLATGN 161


>gi|302608240|emb|CBW44469.1| putative Dihydrolipoyl dehydrogenase (Dihydrolipoamide
           dehydrogenase) (E3 component of pyruvate complex)belong
           to pyridine nucleotide-disulfide oxidoreductase, class I
           [Marinobacter hydrocarbonoclasticus]
          Length = 479

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLG 54
           M  R  DV VIG G AG   A   A+      ++          + +G M     I    
Sbjct: 1   MDKREVDVAVIGAGTAGM-VAYQRARRATDRIVLIEGDQYGTTCARVGCMPSKLLIAAAE 59

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           + H VR+ +A   L G V               GPAV   R + +R+ +   + R + S 
Sbjct: 60  RAHQVRQAEAFGVLPGDV------------RIDGPAVMA-RVREERDRFVAPVVRSMESL 106

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                + G    F     ++      D++ +    +V+ TG+
Sbjct: 107 PQEHRLMGHA-RFVDSHRLVVG----DHTEVTAGRIVIATGS 143


>gi|237717677|ref|ZP_04548158.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452996|gb|EEO58787.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 624

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T ++  +T  +G M     +   G   +    
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAATLIVE-ETEWLGGM-----LTSAGVSAVDGNY 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
           D   GL G   +     +  L+  K           +  +        + +++NL V   
Sbjct: 77  DLPAGLFGEFREHLADYYGGLDSLKT--GWVSAVLFEPSVGNKIFHEMVDAEKNLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     EK++ I+ I MQD+++ + S  +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLEREKDVWIAQIQMQDHTIKKVSAKILIDGTELGDIAKMCGVKYDIG 186


>gi|188584771|ref|YP_001916316.1| FAD dependent oxidoreductase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349458|gb|ACB83728.1| FAD dependent oxidoreductase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 436

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 52/171 (30%), Gaps = 21/171 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD IV+G G  G  AA   A+ G + AL                 GG       +E
Sbjct: 1   MKEYYDAIVVGAGPGGSSAAYHMAQQGLNVALF----EKGNKPGDKNVYGGTIYRRSTQE 56

Query: 62  I------------DALDGLMGRVADAAG--IQFRVLNVKKGP--AVRGPRTQADRELYRL 105
                          +   +  +   +   + F  L  KK P       R++ D  L   
Sbjct: 57  AFPGFWEEAPLERTVITDEVWFLEHDSAVKMGFTGLEFKKPPYNKFTALRSKFDNWLAEQ 116

Query: 106 AMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           A         N  V       GF      I  + + D + I+   V+L  G
Sbjct: 117 AKDVGAELYTNTLVTDLLYQKGFLASGKRIKGVKLYDGTQIKAGVVILAEG 167


>gi|332285697|ref|YP_004417608.1| hypothetical protein PT7_2444 [Pusillimonas sp. T7-7]
 gi|330429650|gb|AEC20984.1| hypothetical protein PT7_2444 [Pusillimonas sp. T7-7]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          N+++D I+IGGG AG   A   A+LG +  L+    S  G    NP
Sbjct: 5  NKNFDAIIIGGGPAGVSCAVWLARLGLAPLLVEASASVGGLCRRNP 50


>gi|325688636|gb|EGD30653.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK72]
          Length = 391

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D             C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDGLFTVRSSDQTWTCQKLIVTTG 163


>gi|304309928|ref|YP_003809526.1| Predicted flavoprotein [gamma proteobacterium HdN1]
 gi|301795661|emb|CBL43860.1| Predicted flavoprotein [gamma proteobacterium HdN1]
          Length = 396

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M  R YDV+VIG G AG + AA+AA+ G    +                + G G+ +
Sbjct: 1  MQTRGYDVVVIGAGAAGLQCAALAAQRGRRVLV----LERSAKPGRKILMSGGGRCN 53


>gi|134300676|ref|YP_001114172.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Desulfotomaculum reducens MI-1]
 gi|134053376|gb|ABO51347.1| glycerol 3-phosphate dehydrogenase (quinone) subunit B
          [Desulfotomaculum reducens MI-1]
          Length = 420

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M+ ++ DV++IG G +G  AAA AA  G    L+ 
Sbjct: 1  MMKKNTDVLIIGAGLSGLMAAAKAADSGKKVLLVA 35


>gi|46205208|ref|ZP_00048861.2| COG1249: Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Magnetospirillum magnetotacticum MS-1]
          Length = 362

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
           YD++V+G G AG  AA  AA+ GA  ALI H T   +  ++ C P+   +     V   +
Sbjct: 17  YDLVVVGAGSAGFSAAITAAEQGAQVALIGHGTLGGSCVNVGCVPSKALIRAAETVHHAN 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G    +      Q RV + +   A +    Q  R   +      + +  N+   +G 
Sbjct: 77  TAGGRFAGI----QAQARVTDWRAQVAQKDALVQGLR---QAKYADLLPAYNNVSYHEGR 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    +++  V         + +++ TGT
Sbjct: 130 A-------RLVAGGVEAGGRHFAANRILIATGT 155


>gi|77408425|ref|ZP_00785164.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           COH1]
 gi|77172948|gb|EAO76078.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           COH1]
          Length = 510

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T ++ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGILA 238


>gi|22537973|ref|NP_688824.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           2603V/R]
 gi|25011914|ref|NP_736309.1| hypothetical protein gbs1875 [Streptococcus agalactiae NEM316]
 gi|76788563|ref|YP_330451.1| NADH dehydrogenase [Streptococcus agalactiae A909]
 gi|76797857|ref|ZP_00780120.1| NADH oxidase/alkyl hydroperoxidase reductase [Streptococcus
           agalactiae 18RS21]
 gi|77405659|ref|ZP_00782747.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           H36B]
 gi|77411539|ref|ZP_00787882.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           CJB111]
 gi|77414209|ref|ZP_00790372.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           515]
 gi|22534874|gb|AAN00697.1|AE014275_5 alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           2603V/R]
 gi|24413456|emb|CAD47534.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563620|gb|ABA46204.1| NADH dehydrogenase [Streptococcus agalactiae A909]
 gi|76586760|gb|EAO63255.1| NADH oxidase/alkyl hydroperoxidase reductase [Streptococcus
           agalactiae 18RS21]
 gi|77159735|gb|EAO70883.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           515]
 gi|77162393|gb|EAO73361.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           CJB111]
 gi|77175732|gb|EAO78513.1| alkyl hydroperoxide reductase, subunit F [Streptococcus agalactiae
           H36B]
          Length = 510

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T ++ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGILA 238


>gi|319745768|gb|EFV98063.1| alkyl hydroperoxide reductase [Streptococcus agalactiae ATCC 13813]
          Length = 510

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G  T ++ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLKTGILA 238


>gi|89893482|ref|YP_516969.1| succinate dehydrogenase flavoprotein subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332930|dbj|BAE82525.1| fumarate reductase flavoprotein subunit [Desulfitobacterium
           hafniense Y51]
          Length = 578

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 110/608 (18%), Positives = 183/608 (30%), Gaps = 107/608 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           VIV+GGG AG  AA   A+ G    L +          C     N A+   G+G    E 
Sbjct: 4   VIVVGGGLAGLMAAIKIAEEGTPVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 63

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + DAA     +++       R P    D       + +R A
Sbjct: 64  FDDSVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKHHRTA 123

Query: 107 MQREILSQENLD-----VIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + E AG     E   + S V+ +     C  +V      + 
Sbjct: 124 FAGATTGQQLLYALDEQVRRFEAAGLVRKYEGWEMLSAVIDEGV---CKGIVAQNLYNME 180

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                    I A            NS +        L        +G+ I    T     
Sbjct: 181 IQSFPADAVIVAAGGCGMIFGKSTNSTINTGSVASALYQQGVKYANGEFIQIHPTAI-PG 239

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           +++L   S        R      T    +    + E      +Y        P Y   + 
Sbjct: 240 EDKLRLMSESARGEGGRVW----TYKEGKPWYFLEE------MY--------PAYGNLVP 281

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------K 331
             I        H +F    G+N  ++VY + +S   P E+Q +    +   E       K
Sbjct: 282 RDIATRA--IYHVVFDLGLGVNGENMVYLD-LSHKDPHELQIKLGGILEIYEKFVGDDPK 338

Query: 332 VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAG----Q---IN--GTTGYEEA 378
              +R   A+ Y      ++  ++        I GLF AG    Q    N  G      A
Sbjct: 339 KVPMRIFPAVHYSMGGMWVDYDQMT------NIPGLFAAGECEYQYHGANRLGANSLLSA 392

Query: 379 AAQGLVAG--------INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
              G++AG         N +  S+  +        +   +    LT KG   PY ++   
Sbjct: 393 IYGGMIAGPKSLEYIKKNKSETSSGEEEAFVRERKAREELWNRILTMKGEENPYHIYKEL 452

Query: 431 AE-----------YRISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRSLL 478
            +                  D     L     K+  I + +   + A +I++   +  L 
Sbjct: 453 GDVMTQNVTVIRYNDKLAGTDQKIQELMQRWQKIRLIDDVQWSNQTALFIRQLWNMLELA 512

Query: 479 KSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + + L +     S    +K D   R    +L         + +  P+  +FS   ++   
Sbjct: 513 RVITLGALNRNESRGAHYKPDYPERDDANWLK------TTIATYTPEGPQFSYEAVDVSL 566

Query: 538 IESSYAAY 545
           I      Y
Sbjct: 567 ITPRPRRY 574


>gi|317130004|ref|YP_004096286.1| HI0933 family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474952|gb|ADU31555.1| HI0933 family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 427

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 26/175 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-- 58
           M N   DVIVIGGG AG  AA  AA+ GA   L          +    AI G G+ ++  
Sbjct: 1   MKNMHADVIVIGGGPAGLMAAVAAAEYGAKVVL----LDKGSKLGRKLAISGGGRCNVTN 56

Query: 59  ---VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRL 105
              V EI A     GR   +    F   ++ +     G + +          +D+ +   
Sbjct: 57  RADVEEIIAHIPGNGRFMYSPFSVFNNEDIIQFFENLGIKLKEEDNGRMFPVSDKAITV- 115

Query: 106 AMQREILSQENLDVI---QGEVAGFNTE--KNIISSIVMQDNSMIRCSTVVLTTG 155
            ++  I   ++L V    + EV     +   + +  + +    +I    V++  G
Sbjct: 116 -VKTLIEKVQSLKVSIRTRTEVNEVLYDFSNSKVKGVQLVSGEVIEAPNVIIAVG 169


>gi|225025337|ref|ZP_03714529.1| hypothetical protein EIKCOROL_02235 [Eikenella corrodens ATCC
           23834]
 gi|224941891|gb|EEG23100.1| hypothetical protein EIKCOROL_02235 [Eikenella corrodens ATCC
           23834]
          Length = 476

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            +DV+VIG G  G  AA  AA+LG  TA I    +  G     PA+GG     G      
Sbjct: 3   QFDVVVIGAGPGGYVAAIRAAQLGFKTACIDAGVNKAGDA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR--------TQADRELYRLAMQREIL 112
            + + +       D A     V NV+   A    R        T   + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGNVQFDAAKMIERKDGIVTKLTGGIKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRC 147
                  +N D  Q EV     EK  +    I++   S  R 
Sbjct: 120 GTASFVGKNGDFWQLEV-DNKGEKTTVEGKHIIVATGSTPRA 160


>gi|190893744|ref|YP_001980286.1| succinate dehydrogenase, flavoprotein subunit [Rhizobium etli
          CIAT 652]
 gi|190699023|gb|ACE93108.1| succinate dehydrogenase protein, flavoprotein subunit [Rhizobium
          etli CIAT 652]
          Length = 613

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|171185800|ref|YP_001794719.1| geranylgeranyl reductase [Thermoproteus neutrophilus V24Sta]
 gi|170935012|gb|ACB40273.1| geranylgeranyl reductase [Thermoproteus neutrophilus V24Sta]
          Length = 453

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 24/184 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGGLGKGHLVR 60
           +   +DV+V+G G AG  A+ + AK G   AL+  K+   IG  +C   +G      + R
Sbjct: 1   MVERFDVVVVGAGTAGAFASYLLAKNGFRVALLESKSGQEIGVKTCGDGLGLHHVERISR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            I     +     +  G++    + K    ++G     DR  +   +  E        V 
Sbjct: 61  HITPNPKVFQNKIE--GVELISPDEKTRLVIKGEGYVLDRFAWGKWLVEE-------AVK 111

Query: 121 QGEV-------AGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTF--LRGVIHIGK 166
            G V            +   +  +                 VV  +G+   LR  +    
Sbjct: 112 AGAVLYEGHTATTPLVDNGAVVGVRAVERRTGSPKEFAAKVVVDASGSAAVLRSKLAGWP 171

Query: 167 LKIP 170
           +  P
Sbjct: 172 ISEP 175


>gi|330720911|gb|EGG99091.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [gamma proteobacterium IMCC2047]
          Length = 475

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV++IG G AG  AA  AA+LG   A I       G     PA+GG 
Sbjct: 1  MAQKFDVVIIGAGPAGYVAAIKAAQLGLKAACIDKWLDAAG----KPALGGT 48


>gi|307315583|ref|ZP_07595126.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
 gi|307322564|ref|ZP_07601907.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|306891792|gb|EFN22635.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|306898718|gb|EFN29379.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
          Length = 435

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 32/160 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G                     +  +    I  
Sbjct: 1   MTKEKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKNVQGAIMYANMLEAIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRE 101
              N A       HLV E       +       G+ +R  +  +    R    R Q D+ 
Sbjct: 61  DFRNDAPLER---HLV-EQRFW---IMDDTSHTGMHYRSDDFNEVTPNRYTIIRAQFDK- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQ 140
                + R++       + +    G   +       +   
Sbjct: 113 ----WLSRKVCEAGGTVLCETTATGLEWDSAGKAIGVRTD 148


>gi|240139207|ref|YP_002963682.1| putative mercuric reductase (MerA) [Methylobacterium extorquens
           AM1]
 gi|240009179|gb|ACS40405.1| Putative mercuric reductase (MerA) [Methylobacterium extorquens
           AM1]
          Length = 479

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREID 63
           YD++V+G G AG  AA  AA+ GA  ALI H T   +  ++ C P+   +     V   +
Sbjct: 17  YDLVVVGAGSAGFSAAITAAEQGAQVALIGHGTLGGSCVNVGCVPSKALIRAAETVHHAN 76

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G    +      Q RV + +   A +    Q  R   +      + +  N+   +G 
Sbjct: 77  TAGGRFAGI----QAQARVTDWRAQVAQKDALVQGLR---QAKYADLLPAYNNVSYHEGR 129

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    +++  V         + +++ TGT
Sbjct: 130 A-------RLVAGGVEAGGRHFAANRILIATGT 155



 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 19/197 (9%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           IV+GGG+ G E A   A++G +  L+        +    P IG    G+L  E I  L G
Sbjct: 187 IVLGGGYIGAELAQTFARVGVAVTLVCRSRLLPAA---EPEIGEALAGYLAGEGIAVLGG 243

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L     D       +   + G        +       LA      + E+L +    VA  
Sbjct: 244 LSYEAVDRTEGGVSLTFWRDGRRETVTAERI------LAATGRTANTEDLGLADAGVAQT 297

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
                  +  ++ D+ M      +   G        +      A     +  N+L    +
Sbjct: 298 P------TGAIVVDDRMRTSKPGIYAAGDVTGKDQFVYMAAYGA---KLAAKNALNGDSL 348

Query: 188 KFDFDTGRLKTGTPARL 204
           ++D         T  ++
Sbjct: 349 RYDNRAMPAVVFTDPQV 365


>gi|134299722|ref|YP_001113218.1| succinate dehydrogenase flavoprotein subunit [Desulfotomaculum
          reducens MI-1]
 gi|134052422|gb|ABO50393.1| succinate dehydrogenase subunit A [Desulfotomaculum reducens
          MI-1]
          Length = 585

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N+   +IV+GGG AG  A   AA++G    L +          C    G  G  +   
Sbjct: 1  MQNK---IIVVGGGLAGLMATIKAAEMGVKVRLFSLVPVKRSHSVCAQG-GINGAVNTKG 56

Query: 61 EID 63
          E D
Sbjct: 57 EGD 59


>gi|84687517|ref|ZP_01015393.1| pyruvate dehydrogenase complex, E3 component,
           lipoamidedehydrogenase, putative [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664426|gb|EAQ10914.1| pyruvate dehydrogenase complex, E3 component,
           lipoamidedehydrogenase, putative [Rhodobacterales
           bacterium HTCC2654]
          Length = 464

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 25/166 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M   S+DVIV+G G  G  AA  AA+LG   A++       I    G +     +     
Sbjct: 1   MAETSFDVIVVGSGPGGYVAAIRAAQLGLKVAVVEREHLGGICLNWGCIPTKALLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+              D AG     V+   +G A +     A            +L +
Sbjct: 61  YHLMHRAKDFG----LSVDKAGYDLDAVVQRSRGVAKQLSGGVA-----------HLLKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
             + V+ GE  G    K  ++ +     S  +    ++L TG   R
Sbjct: 106 NKVTVVMGE--GSIPAKGKVA-VKTDKGSETLTAKNIILATGARAR 148


>gi|302336782|ref|YP_003801988.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
 gi|301633967|gb|ADK79394.1| FAD dependent oxidoreductase [Spirochaeta smaragdinae DSM 11293]
          Length = 644

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/28 (64%), Positives = 21/28 (75%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG +GC AA  AAK GA  AL+
Sbjct: 21 DVLVIGGGISGCMAAISAAKQGAKVALL 48


>gi|300361287|ref|ZP_07057464.1| thioredoxin-disulfide reductase [Lactobacillus gasseri JV-V03]
 gi|300353906|gb|EFJ69777.1| thioredoxin-disulfide reductase [Lactobacillus gasseri JV-V03]
          Length = 311

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++YDVIVIG G  G  AA  AA+      ++
Sbjct: 5  KNYDVIVIGAGPGGLTAALYAARANLKVVIL 35


>gi|86359476|ref|YP_471368.1| succinate dehydrogenase flavoprotein subunit [Rhizobium etli CFN
          42]
 gi|86283578|gb|ABC92641.1| succinate dehydrogenase, flavoprotein subunit protein [Rhizobium
          etli CFN 42]
          Length = 613

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|77359841|ref|YP_339416.1| electron acceptor reductase/NADH oxidase, FAD binding, iron-sulfur
           cluster binding site [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874752|emb|CAI85973.1| putative electron acceptor reductase/NADH oxidase, FAD binding,
           iron-sulfur cluster binding site [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 706

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           M ++   ++V+GGG AG EAA  A++ G    L+
Sbjct: 402 MTDKPKHIVVVGGGPAGIEAAVTASERGHKVTLL 435


>gi|295107097|emb|CBL04640.1| Dehydrogenases (flavoproteins) [Gordonibacter pamelaeae 7-10-1-b]
          Length = 428

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 18/163 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----------IGSMSCNPAIGGLG 54
            +D +V+G G AG  AA V A+ G S  +I   +                      G   
Sbjct: 3   DFDAVVVGAGCAGSVAAYVLAREGKSVLMIERGSDAGAKNMTGGRLYAHALRAVFPGFES 62

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV--RGPRTQADRELYRLAMQREIL 112
           +  L R+I      +    ++  ++F    + +  A      R   DR L   A      
Sbjct: 63  EAPLERKIVRERVSLITEDESTTVEFASPRLGEDEAASYSVLRGPFDRWLASKAEDAGAE 122

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               +      V         I  +       I     +L  G
Sbjct: 123 CIYGI-----AVEDLVWNGGRIVGVR-AGEDEITADVTILADG 159


>gi|254784902|ref|YP_003072330.1| soluble pyridine nucleotide transhydrogenase [Teredinibacter
           turnerae T7901]
 gi|237685088|gb|ACR12352.1| putative pyridine nucleotide-disulphide oxidoreductase
           [Teredinibacter turnerae T7901]
          Length = 473

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD++VIG G AG +AA  AA+ GAS AL          +       G      +RE    
Sbjct: 7   YDMLVIGSGPAGQKAAVEAARSGASVAL----IEKTRKLGGACVQRGTIPSKTLRENALR 62

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
              M   A  +  +          A    R       +   M++++   + +++I G   
Sbjct: 63  VRNMRMNAQLSNFKLAED---TELATLITRLNNVLNAHDEYMRKQLERTK-VNLIHGRAR 118

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             + +   + S+  +         +++ TG+  R
Sbjct: 119 FLSPQDVEVESVRGEK-QTYSSGHILIATGSHPR 151


>gi|195952997|ref|YP_002121287.1| thioredoxin reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932609|gb|ACG57309.1| thioredoxin reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 312

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 46/163 (28%)

Query: 1   MIN--RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKG 56
           MIN  + YD I++GGG AG  A    A+      L+   T    I          G  +G
Sbjct: 1   MINTHKIYDCIIVGGGPAGLTAGLYCARAKMDVILLEKSTLGGQIAITDLVENYPGFPEG 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
              +E+                        K       + QA+R                
Sbjct: 61  ISGKEL----------------------TSKF------KAQAERF--------------G 78

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           L + +  V     + + I  + + + S +R  TV++TTG  +R
Sbjct: 79  LKIHRQGVISVENDNDNIKILKLDNGSELRAKTVIITTGARMR 121


>gi|332188905|ref|ZP_08390609.1| dihydrolipoyl dehydrogenase [Sphingomonas sp. S17]
 gi|332011065|gb|EGI53166.1| dihydrolipoyl dehydrogenase [Sphingomonas sp. S17]
          Length = 464

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 65/182 (35%), Gaps = 11/182 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
           M    YDV+VIG G  G  AA  AA+LG  TA    +  T+G    ++ C P+   L   
Sbjct: 1   MAEYDYDVLVIGAGPGGYVAAIRAAQLGLKTACAEAR-ETLGGTCLNVGCIPSKALLHAS 59

Query: 57  HLVREID----ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
            L  E      A  G+    A     Q      K    + G      ++     ++ +  
Sbjct: 60  ELFEEASHGALAKFGVEIEGAKLNLDQMHAEKAKAVGELTGGIEYLFKKNKVTWLKGKAA 119

Query: 113 SQENLDVIQGEVAGFNTEKNIISS-IVMQD-NSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            Q++  V  G+      +  I +  +V       I    VV +TG      +    + I 
Sbjct: 120 FQDSSTVKVGDQTVTARDIVIATGSVVTPLPGVEIDQKVVVDSTGALALPKVPEHLVVIG 179

Query: 171 AG 172
            G
Sbjct: 180 GG 181


>gi|325916967|ref|ZP_08179209.1| hypothetical protein TIGR00275 [Xanthomonas vesicatoria ATCC 35937]
 gi|325536818|gb|EGD08572.1| hypothetical protein TIGR00275 [Xanthomonas vesicatoria ATCC 35937]
          Length = 393

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 14/147 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MNMRCDVLVIGAGAAGLMSAFTAGRRGRQVLV----LDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKG-PAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                  +   A+    +  +     G       R       + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFI--SANRHFCKSALARYSPGDFVELVER-------HGIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRC 147
             ++     ++   + + +     +R 
Sbjct: 108 SKQIVRLLLDECEAAGVQIHTQCEVRS 134


>gi|317130926|ref|YP_004097208.1| alkyl hydroperoxide reductase, F subunit [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475874|gb|ADU32477.1| alkyl hydroperoxide reductase, F subunit [Bacillus cellulosilyticus
           DSM 2522]
          Length = 508

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+V+GGG AG  AA  AA+ G  T ++ 
Sbjct: 208 FDVLVVGGGPAGSSAAIYAARKGIRTGIVA 237


>gi|153010587|ref|YP_001371801.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
 gi|151562475|gb|ABS15972.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
          Length = 427

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV VIGGG AG  AA   ++ G    ++  ++   G+   N      G
Sbjct: 28 DVAVIGGGLAGLSAALQMSRAGKKVVVLEAESIGFGASGRNGGFVSPG 75


>gi|39951925|ref|XP_363679.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145020547|gb|EDK04676.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 652

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG   AA  A++G    +I  +      +     +         R++   D 
Sbjct: 42  VCVVGAGPAGLMMAANLARMGVKVQVIDDRADQ-TPVGRADGLQPKTLE-TFRQMRLADP 99

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI------- 120
           L+ R      I F              R  AD  L+RL   RE+     +DV+       
Sbjct: 100 LLQRGVKVYDIAF-------------WRGTADEPLHRL--GREVHYPPVIDVLDPYILLV 144

Query: 121 -QGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
            QG V     E      + ++ N+     +  
Sbjct: 145 HQGMVESLFIEDMKKRGVEVRRNTAFESYSAC 176


>gi|16262898|ref|NP_435691.1| FixC oxidoreductase [Sinorhizobium meliloti 1021]
 gi|120196|sp|P09820|FIXC_RHIME RecName: Full=Protein fixC
 gi|551200|gb|AAA21770.1| nitrogen fixation protein [Sinorhizobium meliloti]
 gi|14523540|gb|AAK65103.1| FixC oxidoreductase [Sinorhizobium meliloti 1021]
          Length = 435

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 32/160 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IV+G G +G  AA   A  G                     +  +    I  
Sbjct: 1   MTKEKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKNVQGAIMYANMLEAIIP 60

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRE 101
              N A       HLV E       +       G+ +R  +  +    R    R Q D+ 
Sbjct: 61  DFRNDAPLER---HLV-EQRFW---IMDDTSHTGMHYRSDDFNEVTPNRYTIIRAQFDK- 112

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQ 140
                + R++       + +    G   +       +   
Sbjct: 113 ----WLSRKVCEAGGTVLCETTATGLEWDSAGKAIGVRTD 148


>gi|260425525|ref|ZP_05779505.1| dihydrolipoyl dehydrogenase [Citreicella sp. SE45]
 gi|260423465|gb|EEX16715.1| dihydrolipoyl dehydrogenase [Citreicella sp. SE45]
          Length = 464

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H + 
Sbjct: 3  QYDVIVIGAGPGGYVAAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGRV 72
          E +   A  GL G+ 
Sbjct: 62 EAEHNFAAMGLKGKA 76


>gi|170781824|ref|YP_001710156.1| putative pyridine nucleotide-disulfide oxidoreductase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156392|emb|CAQ01540.1| putative pyridine nucleotide-disulfide oxidoreductase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 306

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGKGHLV 59
           M   SYDV+VIG G AG  AA    +    T ++ + +     ++  +  +   G   L 
Sbjct: 1   MTGDSYDVVVIGAGPAGLSAALNLVRARRRTLVLDSSRPRNAATLMSHGFVTRDGISPL- 59

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPA-------VRGPRTQADRELYRLAM 107
            E+  L  +     D    Q  V+     PA        +G R   DRE++   +
Sbjct: 60  -ELRKLGQVEVESYDEGEFQLAVV-QSAEPAEGGFTIRAKGVRRAPDREVHARRI 112


>gi|209551262|ref|YP_002283179.1| succinate dehydrogenase flavoprotein subunit [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209537018|gb|ACI56953.1| succinate dehydrogenase, flavoprotein subunit [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 613

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|291299489|ref|YP_003510767.1| FAD dependent oxidoreductase [Stackebrandtia nassauensis DSM
          44728]
 gi|290568709|gb|ADD41674.1| FAD dependent oxidoreductase [Stackebrandtia nassauensis DSM
          44728]
          Length = 534

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIV+GGGH G  AAA  AK G    + 
Sbjct: 1  MDGDFDVIVVGGGHNGLVAAAYLAKAGLKVCVC 33


>gi|154247798|ref|YP_001418756.1| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
           [Xanthobacter autotrophicus Py2]
 gi|154161883|gb|ABS69099.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Xanthobacter autotrophicus Py2]
          Length = 402

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 13/160 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR----- 60
           ++VIV+G G AG   A   A  G  TAL+T      G+     A+       L       
Sbjct: 17  HEVIVVGAGPAGLATALGLAARGVPTALVTG-PDR-GADHRTTALLEGSVRILEDFGLWA 74

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT---QADRELYRLAMQREILSQE 115
             E  A      R+ADA     R   V    A  G  T     + +  R  +  + + Q 
Sbjct: 75  ELEPRAAPLRDMRIADATRRLVRAPEVTFRSAEIGLSTFGYNIENDALRNGLLAKAMQQP 134

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           NL + +  +       + ++ + + D S++R   VV   G
Sbjct: 135 NLHIARTALERIEFAADALT-LRLADGSILRARLVVGADG 173


>gi|226945043|ref|YP_002800116.1| dihydrolipoamide dehydrogenase [Azotobacter vinelandii DJ]
 gi|118670|sp|P18925|DLDH_AZOVI RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of pyruvate complex
 gi|142325|gb|AAA22139.1| lipoamide dehydrogenase [Azotobacter vinelandii]
 gi|226719970|gb|ACO79141.1| dihydrolipoamide dehydrogenase [Azotobacter vinelandii DJ]
          Length = 477

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIVIG G  G  AA  +A+LG  TALI
Sbjct: 1  MSQKFDVIVIGAGPGGYVAAIKSAQLGLKTALI 33


>gi|254478956|ref|ZP_05092316.1| hypothetical protein CDSM653_195 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035102|gb|EEB75816.1| hypothetical protein CDSM653_195 [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VIV+GG   G  AA  AAK GA   L          +  +  +GGL    ++  ID 
Sbjct: 62  KYHVIVVGGEPEGVAAAVSAAKNGAKVLL----------IDKHDGLGGLMTYGMLNTIDM 111

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             G  G +       F       G          D E  +    + +  Q N+ +    +
Sbjct: 112 SRGPKGELL--TRGTFEEFFKGIGSVTS-----FDVEKAKKVFMKLVKDQPNITLSLNTI 164

Query: 125 -AGFNTEKNIISSIVMQDNSM 144
                 E N I  +V++ +  
Sbjct: 165 FKEPIMEGNKIIGVVVEKDGK 185


>gi|260433388|ref|ZP_05787359.1| dihydrolipoyl dehydrogenase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417216|gb|EEX10475.1| dihydrolipoyl dehydrogenase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 464

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G  AA  AA+LG  TA+I       I    G +     +     
Sbjct: 1   MAAQSFDLIVIGAGPGGYVAAIRAAQLGLKTAVIEREHLGGICLNWGCIPTKAILRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             A+  G     V+   +G A +                  +L +
Sbjct: 61  FHLMERAKDFG----LTAEKIGYDLDAVVKRSRGVAKQLSGG-----------VGHLLKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
             + V+ GE       K  +S +        +    +VL TG   R +
Sbjct: 106 NKVTVVMGEAT--IPSKGKVS-VKTDKGIEELTAKNIVLATGARAREL 150


>gi|182679664|ref|YP_001833810.1| succinate dehydrogenase flavoprotein subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635547|gb|ACB96321.1| succinate dehydrogenase, flavoprotein subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 612

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 48/217 (22%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----------------THKTSTIGSMS 45
           + ++DV+++G G AG  A    ++ G  TA I                     + +G  +
Sbjct: 24  DHTFDVVIVGAGGAGLRATVGCSQAGLRTACISKVFPTRSHTVAAQGGVAASLANMGPDN 83

Query: 46  CNPAIGGLGKGH------------------LVREIDALDGLMGRVADAAGIQF----RVL 83
               +    KG                    V E++       R  D    Q        
Sbjct: 84  WKWHMYDTVKGSDWLGDQDSIEYLCRNAPAAVFELEHWGVPFSRTEDGRIYQRPFGGMTT 143

Query: 84  NVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISSIV-- 138
           +  KGP  +     ADR  + +      + + +Q     I+        E      +V  
Sbjct: 144 DFGKGPPAQRTCAAADRTGHAILHTLYGQALRNQT-EFFIEYFAIDLIMEDGHCRGVVCL 202

Query: 139 -MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + D ++   R   V+L TG + R            G
Sbjct: 203 KLDDGTIHRFRSQLVILATGGYGRAYFSATSAHTCTG 239


>gi|39939089|ref|NP_950855.1| fatty acid/phospholipid biosynthesis enzyme [Onion yellows
          phytoplasma OY-M]
 gi|39722198|dbj|BAD04688.1| fatty acid/phospholipid biosynthesis enzyme [Onion yellows
          phytoplasma OY-M]
          Length = 457

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIG-SMSCNPA 49
          ++YDV+VIGGG  G  AA  AA++GA  AL+  HK   I  +  C P 
Sbjct: 2  KNYDVLVIGGGPGGYVAAIKAAQMGAKVALVEKHKLGGICLNYGCIPT 49


>gi|297587587|ref|ZP_06946231.1| thioredoxin-disulfide reductase [Finegoldia magna ATCC 53516]
 gi|297574276|gb|EFH92996.1| thioredoxin-disulfide reductase [Finegoldia magna ATCC 53516]
          Length = 310

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 41/154 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+I+IG G AG  A   AA+   +T ++  K  T G ++   +I     G +V E    
Sbjct: 2   YDLIIIGAGPAGLSAGLYAARAKMNTLIVE-KEKTGGQITTTDSI-ENYPGGIVGESGP- 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L+ ++AD                      Q D                 L++ + +V 
Sbjct: 59  -SLIKKMAD----------------------QIDNF--------------GLEIRRADVV 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             +     +  + +++  ++    V++ TG   R
Sbjct: 82  DVDFSD-KVKKLTLKNGDVLEAKAVIIATGAAPR 114


>gi|169824134|ref|YP_001691745.1| thioredoxin reductase [Finegoldia magna ATCC 29328]
 gi|302380057|ref|ZP_07268534.1| thioredoxin-disulfide reductase [Finegoldia magna ACS-171-V-Col3]
 gi|303234908|ref|ZP_07321533.1| thioredoxin-disulfide reductase [Finegoldia magna BVS033A4]
 gi|167830939|dbj|BAG07855.1| thioredoxin reductase [Finegoldia magna ATCC 29328]
 gi|302312130|gb|EFK94134.1| thioredoxin-disulfide reductase [Finegoldia magna ACS-171-V-Col3]
 gi|302494026|gb|EFL53807.1| thioredoxin-disulfide reductase [Finegoldia magna BVS033A4]
          Length = 310

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 41/154 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+I+IG G AG  A   AA+   +T ++  K  T G ++   +I     G +V E    
Sbjct: 2   YDLIIIGAGPAGLSAGLYAARAKMNTLIVE-KEKTGGQITTTDSI-ENYPGGIVGESGP- 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
             L+ ++AD                      Q D                 L++ + +V 
Sbjct: 59  -SLIKKMAD----------------------QIDNF--------------GLEIRRADVV 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             +     +  + +++  ++    V++ TG   R
Sbjct: 82  DVDFSD-KVKKLTLKNGDVLEAKAVIIATGAAPR 114


>gi|241206662|ref|YP_002977758.1| succinate dehydrogenase flavoprotein subunit [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240860552|gb|ACS58219.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 613

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|153953634|ref|YP_001394399.1| enoate reductase [Clostridium kluyveri DSM 555]
 gi|219854256|ref|YP_002471378.1| hypothetical protein CKR_0913 [Clostridium kluyveri NBRC 12016]
 gi|146346515|gb|EDK33051.1| Predicted enoate reductase [Clostridium kluyveri DSM 555]
 gi|219567980|dbj|BAH05964.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 666

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           + R  +V+VIGGG +G EAA  AA+LG +T L              P +GGL K    
Sbjct: 379 VKRQTNVVVIGGGTSGLEAACTAAELGCNTFLFE----------KKPYLGGLAKEISK 426


>gi|255527176|ref|ZP_05394061.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           carboxidivorans P7]
 gi|296186119|ref|ZP_06854524.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|255509131|gb|EET85486.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           carboxidivorans P7]
 gi|296049387|gb|EFG88816.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
           carboxidivorans P7]
          Length = 649

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +V+V+GGG AGCEAA   A+ G +  L+  ++ 
Sbjct: 513 EVVVLGGGLAGCEAAIHLAREGKNVHLVEMRSE 545



 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG----HLVREID 63
           V+V GGG  G +AA  AAK G    L             +  +GG+ KG        E+ 
Sbjct: 391 VLVAGGGPGGLKAAITAAKRGHKVILCE----------KSNELGGILKGEQAIPFKYEMY 440

Query: 64  ALDGLMGRVADAAGIQFRVLNVK 86
            L   +G++A  AG++ R LN  
Sbjct: 441 ELGVTLGKLAKDAGVEIR-LNTA 462


>gi|188590356|ref|YP_001920065.1| NADH oxidase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500637|gb|ACD53773.1| NADH oxidase [Clostridium botulinum E3 str. Alaska E43]
          Length = 662

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + +  +V+VIGGG AG EAA  AA++G +T LI  K
Sbjct: 380 VKKQTNVVVIGGGTAGLEAACTAAEVGCTTFLIEQK 415


>gi|17230462|ref|NP_487010.1| succinate dehydrogenase flavoprotein subunit [Nostoc sp. PCC 7120]
 gi|17132064|dbj|BAB74669.1| succinate dehydrogenase flavoprotein [Nostoc sp. PCC 7120]
          Length = 575

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 43/197 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AGC AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGCRAAVEIARTDPSLNVAVVAKTHPIRSHSVAAQGGMAASLKNVDSTD 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQA--- 98
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  TWEAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHMGVLF-SRLPDGRIAQRAFGGH 121

Query: 99  --DRELYRL-----AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQ---DN-- 142
             +R  Y       A+  E+++   +  + + Q   V     E+N    +VM    D   
Sbjct: 122 SHNRTCYAADKTGHAILHELVNNLRRYGVHIYQEWYVMRLILEENEAKGLVMYSLLDGHI 181

Query: 143 SMIRCSTVVLTTGTFLR 159
            ++R   V+  TG + R
Sbjct: 182 EVVRAKAVMFATGGYGR 198


>gi|84514731|ref|ZP_01002095.1| sarcosine oxidase, alpha subunit [Loktanella vestfoldensis SKA53]
 gi|84511782|gb|EAQ08235.1| sarcosine oxidase, alpha subunit [Loktanella vestfoldensis SKA53]
          Length = 1000

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 29/162 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G +G  AA  A + G+   L+   +   G++   P++   G+        A D
Sbjct: 171 DVLVVGSGPSGIAAALTAGRAGSKVVLVDENSEMGGTILSEPSVSIDGQS-------AWD 223

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L G +A+      R+ NV+     R  RT A    Y   M   +     L    G+V  
Sbjct: 224 WLEGAMAELD----RMPNVR-----RMTRTTA-MGYYHQNMIGLVQK---LTDHMGDVPD 270

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
                        +    +R   VVL  G   R ++  G   
Sbjct: 271 ---------GAPRERMWRVRAKEVVLAQGAIERPMVFDGNDT 303


>gi|327403419|ref|YP_004344257.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Fluviicola taffensis DSM 16823]
 gi|327318927|gb|AEA43419.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Fluviicola taffensis DSM 16823]
          Length = 406

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 28/173 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA---------------LITHKTSTIGSMSC 46
           + +  DV+VIG G AG  A++   K G S                 L+ H    +  +  
Sbjct: 1   MTKEVDVVVIGAGPAGSVASSKLIKEGLSVLVLEKMVFPRFVIGESLLPHSMDYLDELGL 60

Query: 47  NPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
            PA+          E        G      G +   L   +         Q  R  +  A
Sbjct: 61  LPAV----------EALNFQVKTGACFYHNGERCDFLFENQFSEGWSYTFQVKRADFDHA 110

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNS--MIRCSTVVLTTGT 156
           + ++   Q  +   Q EV    T     I +   +D     + C  V+  +G 
Sbjct: 111 LIKQAEKQGAVVEFQAEVTDVKTSATKQIVTYKDKDGELHEVHCRFVMDASGY 163


>gi|320154940|ref|YP_004187319.1| NAD(FAD)-utilizing dehydrogenase [Vibrio vulnificus MO6-24/O]
 gi|319930252|gb|ADV85116.1| NAD(FAD)-utilizing dehydrogenase [Vibrio vulnificus MO6-24/O]
          Length = 395

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DV+VIG G AG   AA A + G    ++ H
Sbjct: 1  MSNKFDVVVIGAGAAGLMCAAEAGRRGRKVLVLDH 35


>gi|256783693|ref|ZP_05522124.1| oxidoreductase [Streptomyces lividans TK24]
 gi|289767576|ref|ZP_06526954.1| oxidoreductase [Streptomyces lividans TK24]
 gi|289697775|gb|EFD65204.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 416

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +R  DV+V+G G AG  AAA  A+ GA   L+
Sbjct: 1  MTSRQADVLVVGAGPAGLTAAARLARTGARVVLL 34


>gi|27364539|ref|NP_760067.1| NAD(FAD)-utilizing dehydrogenase [Vibrio vulnificus CMCP6]
 gi|27360658|gb|AAO09594.1| NAD(FAD)-utilizing dehydrogenase [Vibrio vulnificus CMCP6]
          Length = 395

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DV+VIG G AG   AA A + G    ++ H
Sbjct: 1  MSNKFDVVVIGAGAAGLMCAAEAGRRGRKVLVLDH 35


>gi|70733774|ref|YP_257414.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens Pf-5]
 gi|68348073|gb|AAY95679.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ SYDVIVIG G  G  AA  AA+LG  T  I
Sbjct: 1  MSESYDVIVIGAGPGGYVAAIRAAQLGLKTVCI 33


>gi|37678261|ref|NP_932870.1| flavoprotein [Vibrio vulnificus YJ016]
 gi|37197000|dbj|BAC92841.1| predicted flavoprotein [Vibrio vulnificus YJ016]
          Length = 410

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DV+VIG G AG   AA A + G    ++ H
Sbjct: 16 MSNKFDVVVIGAGAAGLMCAAEAGRRGRKVLVLDH 50


>gi|21225292|ref|NP_631071.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|7649651|emb|CAB88983.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 416

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +R  DV+V+G G AG  AAA  A+ GA   L+
Sbjct: 1  MTSRQADVLVVGAGPAGLTAAARLARTGARVVLL 34


>gi|329768499|ref|ZP_08259988.1| hypothetical protein HMPREF0428_01685 [Gemella haemolysans M341]
 gi|328836727|gb|EGF86382.1| hypothetical protein HMPREF0428_01685 [Gemella haemolysans M341]
          Length = 381

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 57/419 (13%), Positives = 107/419 (25%), Gaps = 126/419 (30%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI+IG G AG   A      G    ++               + G G+ +++   +A
Sbjct: 2   KYDVIIIGLGSAGLMIADRLNDSGLKVLVLEQNR----RAGIKLLLTGNGRCNVMSSDNA 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-- 122
            D                       AV   R    R  Y     ++   + NL + Q   
Sbjct: 58  ED--------------------FVAAVHNGRFL--RSAYHKYNVKKFFDKHNLKLKQENR 95

Query: 123 ---------------------------EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                                      +V     E + +  +   +        +V+  G
Sbjct: 96  RLYPASEKARDVVNAFKIDHAKINYKEKVEDLVFEDDKLVGVKT-NVDTYYGKNIVVCAG 154

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
                         P          SL     K      ++     A +           
Sbjct: 155 ----------GKTYP----QSGSDGSLHRILKKHGVKITKIYPSEVALVFEDFTELSGVA 200

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
            Q              ++ +++        N  +  ++  +   S   S  +  +  RY 
Sbjct: 201 LQ------------NVRMFHKK--------NERSGDLLFTHKGLSGPLSISMGEFVARYP 240

Query: 276 PSIEDKIVRFGERNGHQIF-------------------------LEPEGLNTDVVYPNGI 310
                    + E N  ++F                           PE ++   +     
Sbjct: 241 EDKFYLDF-YPELNEEELFAKLWEDNKFLNGKLPKSFYNFMIEKYFPENVSKKELR--KF 297

Query: 311 STALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
            T +        ++T+P LE          ++   ++PK        KKI  L+ AG+I
Sbjct: 298 VTRIKRYELID-VKTMP-LEYA--FTTAGGVDLKVVSPKTCSH----KKIENLYFAGEI 348


>gi|116254176|ref|YP_770014.1| succinate dehydrogenase flavoprotein subunit [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115258824|emb|CAK09930.1| putative succinate dehydrogenase flavoprotein subunit [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 613

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ SYDVIV+G G AG  A    A+ G  TA IT
Sbjct: 16 VDHSYDVIVVGAGGAGLRATLGMAEQGFRTACIT 49


>gi|114321754|ref|YP_743437.1| dihydrolipoamide dehydrogenase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228148|gb|ABI57947.1| dihydrolipoamide dehydrogenase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 474

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYDVIVIG G AG  AA   A+LG +TA+              P  GG 
Sbjct: 1  MANSYDVIVIGAGPAGYVAAIRCAQLGMTTAV----IDEFRYKDGKPQPGGT 48


>gi|298245561|ref|ZP_06969367.1| dihydrolipoamide dehydrogenase [Ktedonobacter racemifer DSM 44963]
 gi|297553042|gb|EFH86907.1| dihydrolipoamide dehydrogenase [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
           M N+ YDV VIG G  G  AA  AA+LGA  A++  +    T  ++ C P+   L    +
Sbjct: 1   MSNKHYDVAVIGAGPGGYVAAIRAAQLGAKVAIVEKQYMGGTCLNVGCIPSKAMLHVAEV 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR---EILSQE 115
           +  ++++  L   +  A                  P+  A ++     M      ++   
Sbjct: 61  LHSMESVSDLGIELGQAPTFHM-------------PKAVAFKDKVVKRMTSGVGSLMKAN 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           N+DV  G   G       +S +   D S    +   ++L TG+
Sbjct: 108 NIDVYDG--LGVIDASRRVS-VQRGDGSHEEFQAEKIILATGS 147


>gi|221315110|ref|ZP_03596915.1| succinate dehydrogenase flavoprotein subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
          Length = 586

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 76/248 (30%), Gaps = 31/248 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGMAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D+   R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDDRTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFS 227
           D++L   S
Sbjct: 243 DDKLRLMS 250


>gi|220932154|ref|YP_002509062.1| FAD dependent oxidoreductase [Halothermothrix orenii H 168]
 gi|219993464|gb|ACL70067.1| FAD dependent oxidoreductase [Halothermothrix orenii H 168]
          Length = 423

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIV GGG  G  A+  AA++G    L+
Sbjct: 3  EYDVIVCGGGPGGIAASIGAARMGKKVLLV 32


>gi|84683402|ref|ZP_01011305.1| Geranylgeranyl reductase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668145|gb|EAQ14612.1| Geranylgeranyl reductase [Rhodobacterales bacterium HTCC2654]
          Length = 394

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++ +DV+VIG G AG  AA  A  LG S ALI
Sbjct: 1  MADQDFDVVVIGAGPAGSSAAKRARDLGLSVALI 34


>gi|300855953|ref|YP_003780937.1| thioredoxin reductase [Clostridium ljungdahlii DSM 13528]
 gi|300436068|gb|ADK15835.1| thioredoxin reductase [Clostridium ljungdahlii DSM 13528]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDVI+IG G AG  AA  +A+    T L+
Sbjct: 1  MNNIYDVIIIGSGPAGLSAALYSARAKMKTLLL 33


>gi|218961964|ref|YP_001741739.1| Thioredoxin reductase [Candidatus Cloacamonas acidaminovorans]
 gi|167730621|emb|CAO81533.1| Thioredoxin reductase [Candidatus Cloacamonas acidaminovorans]
          Length = 310

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  +A+ G  T ++
Sbjct: 2  YDVIIIGAGPAGLSAAIYSARSGLKTVVL 30


>gi|282877829|ref|ZP_06286641.1| FAD dependent oxidoreductase [Prevotella buccalis ATCC 35310]
 gi|281300040|gb|EFA92397.1| FAD dependent oxidoreductase [Prevotella buccalis ATCC 35310]
          Length = 634

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V GGG +G  AA  +A++G    +I   T   G ++      G G   +    +   
Sbjct: 38  DVVVAGGGASGVSAALQSARMGMRVLVIEESTWLGGMLT------GAGVSAIDGNFNMPA 91

Query: 67  GLMGRVADAAGIQF---RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           G+ G   +     +     LN          R   +  +    +   +  ++N++V +  
Sbjct: 92  GIFGEFRNRLAQHYGSLEALNT-----GWVSRVLFEPSVGNQVLNDMVAQEKNIEVWKES 146


>gi|317154254|ref|YP_004122302.1| geranylgeranyl reductase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944505|gb|ADU63556.1| geranylgeranyl reductase [Desulfovibrio aespoeensis Aspo-2]
          Length = 405

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDVIV+G G AG   A  AA+ G    L+  K             G       + E+++
Sbjct: 3  DYDVIVVGAGPAGTCTAIHAARQGLHVLLLDQKK-----FPREKTCGDALSSLAIAELNS 57

Query: 65 LDGL 68
          L  L
Sbjct: 58 LGLL 61


>gi|194017156|ref|ZP_03055768.1| succinate dehydrogenase flavoprotein subunit [Bacillus pumilus ATCC
           7061]
 gi|194011024|gb|EDW20594.1| succinate dehydrogenase flavoprotein subunit [Bacillus pumilus ATCC
           7061]
          Length = 586

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 185/618 (29%), Gaps = 129/618 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAEAGTAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPYEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG 155
                    +   +  Q    V + EVAG  T  E       V+ D  + R       T 
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRYEVAGLVTKYEGWEFLGAVLDDEEVCRGIVAQNLTT 181

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
             +        +    G       +   NS +        +        +G+ I    T 
Sbjct: 182 MEIESFRSDAVIMATGGPGIVFGKS--TNSMINTGSAASIVYQQGAHYANGEFIQIHPTA 239

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
               D++L   S        R      T  + +    + E                P Y 
Sbjct: 240 I-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYG 280

Query: 276 PSIEDKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK-- 331
             +   I     R    + +E + G+N  ++VY + +S   P+E+  +    I   EK  
Sbjct: 281 NLVPRDI---ATREIFDVCVEQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFM 336

Query: 332 --------VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN--------- 370
                   + I  P  A+ Y      ++  ++        I GLF AG+ +         
Sbjct: 337 GDDPRKLPMKIF-P--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDYSMHGGNRL 387

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS------------------YIGVMI 412
           G      A   G+VAG N+ +  + L+      + +                    G   
Sbjct: 388 GANSLLSAIYGGMVAGPNAVKYISGLEKSAEDLSSATFDSAVKKEQEKWDNILGMDGTEN 447

Query: 413 DDLTSKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQE 470
             +  K + E      +   Y    L+ D     L     ++          + A + ++
Sbjct: 448 AYVLHKELGEWMTDNVTVVRYNDKLLKTDQKIEELMERYKQININDTASWSNQGAAFTRQ 507

Query: 471 YNFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS-----------YPDFSIQNL 518
            + +  L + + + +     S    +K D   R   EFL             P F  +++
Sbjct: 508 LDNMLQLARVITIGAYNRNESRGAHYKPDFPERNDEEFLKTTMATFKGKNQKPAFHYEDV 567

Query: 519 FS--ICPDARKFSSLVIE 534
               I P  R +S   +E
Sbjct: 568 DVSLIAPRKRDYSKKKVE 585


>gi|312960808|ref|ZP_07775313.1| alkyl hydroperoxide reductase, subunit F [Pseudomonas fluorescens
           WH6]
 gi|311284466|gb|EFQ63042.1| alkyl hydroperoxide reductase, subunit F [Pseudomonas fluorescens
           WH6]
          Length = 521

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGAST----------ALITHKTSTIGSMS 45
             ++DV+V+GGG AG  AA  AA+ G  T           L T       S+ 
Sbjct: 209 KEAFDVLVVGGGPAGSSAAIYAARKGIRTGVAAERFGGQVLDTMSIENFISVQ 261


>gi|302330013|gb|ADL20207.1| Putative FAD-linked oxidoreductase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 425

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 75/226 (33%), Gaps = 42/226 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVR-EI 62
           DV+V+G G AG  AA  AA+ G++  LI   T         +C   +       L +  I
Sbjct: 11  DVLVVGAGPAGSTAAINAAQRGSTVLLIDAATFPRDK----TCGDGLTPRAVHQLEKIGI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ----ENLD 118
           D       +     G    V      P  + P       + R      +L+      N+ 
Sbjct: 67  DVTSRYASKGLKLHGFGGSVT----APWPQSPFGTISSAMPRSEFDELLLNTAQQHSNVQ 122

Query: 119 VIQGEVAGFNTEKN--------------IISSIVMQDNS------MIRCSTVVLTTGTFL 158
           V QG V   + E +               I ++ + D        +I    V  T G  L
Sbjct: 123 VWQG-VTAVSVEASPASSQPTSEFPKAGRIRTVTLDDGRVVAPAFVIVADGVRSTFGKLL 181

Query: 159 RGVIHIGKLKIPAGR-MGDSP---SNSLFNSFMKFDFDTGRLKTGT 200
               H G++   A R   ++P      + +   +   DTG  + G 
Sbjct: 182 GRQWHRGEVYGIAARSYCETPRGDDPWMHSHL-ELRDDTGTAQPGY 226


>gi|300857718|ref|YP_003782701.1| hypothetical protein cpfrc_00301 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685172|gb|ADK28094.1| putative secreted protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205460|gb|ADL09802.1| Putative FAD-linked oxidoreductase [Corynebacterium
           pseudotuberculosis C231]
 gi|308275696|gb|ADO25595.1| Putative FAD-linked oxidoreductase [Corynebacterium
           pseudotuberculosis I19]
          Length = 425

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 75/226 (33%), Gaps = 42/226 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVR-EI 62
           DV+V+G G AG  AA  AA+ G++  LI   T         +C   +       L +  I
Sbjct: 11  DVLVVGAGPAGSTAAINAAQRGSTVLLIDAATFPRDK----TCGDGLTPRAVHQLEKIGI 66

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ----ENLD 118
           D       +     G    V      P  + P       + R      +L+      N+ 
Sbjct: 67  DVTSRYASKGLKLHGFGGSVT----APWPQSPFGTISSAMPRSEFDELLLNTAQQHSNVQ 122

Query: 119 VIQGEVAGFNTEKN--------------IISSIVMQDNS------MIRCSTVVLTTGTFL 158
           V QG V   + E +               I ++ + D        +I    V  T G  L
Sbjct: 123 VWQG-VTAVSVEASPASSQPTSEFPKAGRIRTVTLDDGRVVAPAFVIVADGVRSTFGKLL 181

Query: 159 RGVIHIGKLKIPAGR-MGDSP---SNSLFNSFMKFDFDTGRLKTGT 200
               H G++   A R   ++P      + +   +   DTG  + G 
Sbjct: 182 GRQWHRGEVYGIAARSYCETPRGDDPWMHSHL-ELRDDTGTAQPGY 226


>gi|268326338|emb|CBH39926.1| conserved hypothetical protein, geranylgeranyl reductase family
           [uncultured archaeon]
          Length = 385

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREI 62
           + YDVIVIG G +G  A+   A  G +T L+      +  +  C  A+      HL   I
Sbjct: 2   QQYDVIVIGAGPSGAIASKTCAGKGLNTLLLE--KEGMPRLKLCGGAVSISALSHLDFGI 59

Query: 63  DALDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           +    L+ R    A + F+     +  K   A+   R + D  L   A+   +   E   
Sbjct: 60  EK--DLIERECYGARVHFKNHQIEVKRKSRLAILVSRDKFDAYLVSKAVDAGVALHE--- 114

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               +      E+  I  +V  +        V+   G
Sbjct: 115 --AEKATSIKPEQPRI--VVETNKEKYHAKVVIGADG 147


>gi|160902043|ref|YP_001567624.1| thioredoxin reductase [Petrotoga mobilis SJ95]
 gi|160359687|gb|ABX31301.1| thioredoxin reductase [Petrotoga mobilis SJ95]
          Length = 340

 Score = 46.5 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 35/170 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I + YDV++IGGG AG  AA  A + GAST +I       G M+    I        ++ 
Sbjct: 14  IKQQYDVVIIGGGPAGISAAIYALQGGASTLVIEKAIEG-GQMNLTDIIENYPGFKTIK- 71

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            + L  LM   A+  G  F    V            AD++                    
Sbjct: 72  GEELSSLMKEHAEQFGADFYDGKVI----ELIDSLTADKD-------------------- 107

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                F+        +VM++   I+   +++ +G++ R +   G+ +  +
Sbjct: 108 ---EDFH------KMVVMENGKTIKSKAIIIASGSYPRKLGVKGEEEFSS 148


>gi|326791253|ref|YP_004309074.1| HI0933 family protein [Clostridium lentocellum DSM 5427]
 gi|326542017|gb|ADZ83876.1| HI0933 family protein [Clostridium lentocellum DSM 5427]
          Length = 409

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 24/209 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y+ I++GGG AG   A   AK      L+               I G G+ +     D 
Sbjct: 2   HYNTIIVGGGPAGLFTAQALAKKQKRVLLLERNK----GAGKKLLISGAGQCNFTHAGDI 57

Query: 65  LD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-------DRELYRLAMQREIL 112
            D         +    A + F      +     G             + +  + +   +L
Sbjct: 58  EDFFNCYDDKAKFLKKALLAFDNKKTMRFFEEAGVAYTVFPNNKVFPKSMKSVDILNALL 117

Query: 113 SQE---NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----G 165
            Q    N+++I  E+    +  + + ++            VV+ TG      +       
Sbjct: 118 VQCQKSNVEMIYNELVNQISVYDKVFTVETATGKRYFSDQVVIATGGKSYAHMGSDGTGY 177

Query: 166 KLKIPAGRMGDSPSNSLFN-SFMKFDFDT 193
            L    G     P  +L +    +  F  
Sbjct: 178 LLAKHLGHRIIEPRPALTDVRLDENTFKV 206


>gi|281204909|gb|EFA79103.1| hypothetical protein PPL_07928 [Polysphondylium pallidum PN500]
          Length = 457

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           + YDVIV+GGG  G  +A + AK G    L             N +  G G+
Sbjct: 65  KFYDVIVVGGGITGSSSAYMLAKSGLKVLL----LEQYDMCHTNASSHGDGR 112


>gi|262044887|ref|ZP_06017929.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037614|gb|EEW38843.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 669

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +NR  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|229821317|ref|YP_002882843.1| hypothetical protein Bcav_2836 [Beutenbergia cavernae DSM 12333]
 gi|229567230|gb|ACQ81081.1| conserved hypothetical protein [Beutenbergia cavernae DSM 12333]
          Length = 797

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 68/217 (31%), Gaps = 34/217 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG  AA  AA+ G    L          +   P +GG     +   I    
Sbjct: 41  DLVVVGGGLAGSCAAITAARAGMRVVL----------VQDRPVLGGNSSSEVRLWILGAT 90

Query: 67  GLMG---RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR----EILSQENLDV 119
             MG   R A   G+   VL         G     D  L    ++      +L+   +DV
Sbjct: 91  AHMGNNNRFAREGGVVDEVLVENTYRNRDGNPVIFDTILLEKVVEEPGITLLLNTAMVDV 150

Query: 120 IQGEVAGFNTEKNIISSIVM-----QDNSMIRCSTVVLTTGT----FLRGVIHIGKLKIP 170
              E+A    E + I+ +            I     +  +G     FL G       +  
Sbjct: 151 ---EMADTGDETHRIAGVTAFCSQNSTRYEITAPYFLDASGDGALGFLAGAAFRMGAEAS 207

Query: 171 AGRMGDSPSNS-----LFNSFMKFDFDTGRLKTGTPA 202
           A               L +S   +  D G     TP 
Sbjct: 208 AEFGEKFAPTDDYGHLLGHSIYFYSKDVGHPVRFTPP 244


>gi|315122382|ref|YP_004062871.1| succinate dehydrogenase flavoprotein subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495784|gb|ADR52383.1| succinate dehydrogenase flavoprotein subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 611

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 61/225 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------------HKTSTIGSM 44
           ++ SYDVI++G G AG  A    A+ G  TA IT                    + +   
Sbjct: 14  VDHSYDVIIVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPD 73

Query: 45  SCNPAIGGLGKG------------------HLVREIDALD-----GLMGRVADA-AGIQF 80
           S    +    KG                    V E++           G++     G   
Sbjct: 74  SWQWHLYDTVKGSDWLGDVDAIQYLAMEAPKSVYELEHYGVPFSRNEEGKIYQRPFGGHM 133

Query: 81  RVLNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTE-KN 132
           +  N  +GP V+     ADR        LY  A++ +         I+          + 
Sbjct: 134 Q--NYGEGPPVQRTCAAADRTGHAILHTLYGQALKNDAE-----FFIEYFALDLIMNAEG 186

Query: 133 IISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               ++       +        VVL TG + R            G
Sbjct: 187 RCVGVIAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTG 231


>gi|307310600|ref|ZP_07590247.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Sinorhizobium meliloti BL225C]
 gi|307320982|ref|ZP_07600389.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Sinorhizobium meliloti AK83]
 gi|306893356|gb|EFN24135.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Sinorhizobium meliloti AK83]
 gi|306899710|gb|EFN30336.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Sinorhizobium meliloti BL225C]
          Length = 403

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD+ +IG G AG  AA   A+ G   AL+  + 
Sbjct: 3  HYDIAIIGAGLAGSLAAIALAREGHRVALVGPRP 36


>gi|291085715|ref|ZP_06353835.2| FixC protein [Citrobacter youngae ATCC 29220]
 gi|291070240|gb|EFE08349.1| FixC protein [Citrobacter youngae ATCC 29220]
          Length = 438

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D I++G G +GC AA V AK G    +         +       GG    H + 
Sbjct: 9  MSDEKFDAIIVGAGISGCIAAYVMAKAGLDVLV----IERGDTAGSKNMTGGRLYTHSLE 64

Query: 61 EI 62
          EI
Sbjct: 65 EI 66


>gi|238893052|ref|YP_002917786.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545368|dbj|BAH61719.1| NADH:flavin oxidoreductase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 677

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +NR  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|329764852|ref|ZP_08256443.1| geranylgeranyl reductase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138638|gb|EGG42883.1| geranylgeranyl reductase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 405

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          +  +YD++V+GGG AG   A  AAK G   AL+  K  TI        +
Sbjct: 3  LEYNYDLVVVGGGPAGSSVAYEAAKNGIKVALLE-KEETIAYSVRTSGV 50


>gi|284164659|ref|YP_003402938.1| geranylgeranyl reductase [Haloterrigena turkmenica DSM 5511]
 gi|284014314|gb|ADB60265.1| geranylgeranyl reductase [Haloterrigena turkmenica DSM 5511]
          Length = 467

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          DV+V+G G AGC AAA  A+ G    ++  KT    G ++C  A+ G
Sbjct: 18 DVVVVGAGTAGCYAAATVAREGYDVVVLERKTEDEAGHIACGDALKG 64


>gi|163748246|ref|ZP_02155540.1| hypothetical protein OIHEL45_20806 [Oceanibulbus indolifex
          HEL-45]
 gi|161378482|gb|EDQ02957.1| hypothetical protein OIHEL45_20806 [Oceanibulbus indolifex
          HEL-45]
          Length = 382

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          N+  D+IVIG G  GC AA  AA+ G+S  ++  +T + G    N  +   G      ++
Sbjct: 22 NKEADLIVIGAGFTGCSAALEAARSGSSVVVLEAETVSHGGSGRNVGLVNAGLWLPPDDV 81

Query: 63 DALDGLMG 70
           A+ G   
Sbjct: 82 VAIMGESA 89


>gi|88602103|ref|YP_502281.1| geranylgeranyl reductase [Methanospirillum hungatei JF-1]
 gi|88187565|gb|ABD40562.1| geranylgeranyl reductase [Methanospirillum hungatei JF-1]
          Length = 384

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +NR+YDV ++GGG  G  AA + AK G  T LI
Sbjct: 1  MNRTYDVAIVGGGPVGSTAARICAKSGLKTLLI 33


>gi|257389166|ref|YP_003178939.1| geranylgeranyl reductase [Halomicrobium mukohataei DSM 12286]
 gi|257171473|gb|ACV49232.1| geranylgeranyl reductase [Halomicrobium mukohataei DSM 12286]
          Length = 458

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 50/164 (30%), Gaps = 8/164 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHL- 58
           M    YDV V+G G +GC AAA  A  G    +   K     G ++C  A+ G       
Sbjct: 1   MTTHEYDVAVVGAGTSGCYAAATLAHEGYDVVIAERKDAQEAGHIACGDALKGASNFPTA 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           + +            D    +    +      V G     DR  Y   +      Q  ++
Sbjct: 61  IPKSQIEGAFTNTGVDHGRFEIPEEDTVLEIPVPGELAVIDRWEYGRLLIEGAE-QAGVE 119

Query: 119 VIQGEVAGFN--TEKNIISS---IVMQDNSMIRCSTVVLTTGTF 157
                V       +   ++    I   D++      VV   G  
Sbjct: 120 FHYDTVVQDVRQDDDGRVTGLEAIRKGDHASYEAELVVDAAGAL 163


>gi|297571171|ref|YP_003696945.1| electron-transferring-flavoproteindehydrogenase [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296931518|gb|ADH92326.1| Electron-transferring-flavoproteindehydrogenase [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 433

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          I+  +DVIV+G G AG  AA + A+ G    L        G        GG+    ++ E
Sbjct: 3  IDYDFDVIVVGAGVAGSTAAFLLAQRGHEVLLA----ERGGEPGEKNLSGGVFYSRVMDE 58

Query: 62 I 62
          I
Sbjct: 59 I 59


>gi|87301386|ref|ZP_01084227.1| Monooxygenase, FAD-binding [Synechococcus sp. WH 5701]
 gi|87284354|gb|EAQ76307.1| Monooxygenase, FAD-binding [Synechococcus sp. WH 5701]
          Length = 405

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++G G AG   A + A+ G    L+                G +  G    E      
Sbjct: 10  VVIVGAGPAGASLAMLLAERGVPVTLVEAARD---FQRQFRGEGLMPSGLAALEAMGCGP 66

Query: 68  LMGRV------ADAAGIQFRVLNVKKGPAVRGPR--------TQADRELYRLAMQREILS 113
           L+ R+      A +  +  R L   + P + G R           D  L R +       
Sbjct: 67  LLARLPQRTLSAWSFQLHGRELFRVEEP-LEGDRPCTLISQPALLDALLERASRASGFQW 125

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  L      V         I+ +V+ D S +  S VV T G
Sbjct: 126 RPGL-----AVVDLIEAGGRITGVVLSDGSRLAASLVVATDG 162


>gi|330811085|ref|YP_004355547.1| dihydrolipoyl dehydrogenase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379193|gb|AEA70543.1| Dihydrolipoyl dehydrogenase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 478

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---------SCNPAIGG 52
           + + +DV+VIG G  G  AA  AA+LG +TA I   T   G +          C P+   
Sbjct: 1   MTQKFDVVVIGAGPGGYVAAIKAAQLGLTTACIEKYTDKEGKLALGGTCLNVGCIPSKAL 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           L       E  A DG          ++  V      PA+ G +    + L        + 
Sbjct: 61  LDSSWKFHE--AQDGFAIHGISTGDVKMDV------PAMVGRKANIVKNLTSGVA--TLF 110

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
               +  IQG       +K  ++     D S  +I    V+L  G+
Sbjct: 111 KANGVTSIQGHGKLLMGKKVEVT---KPDGSVEVIEAENVILAPGS 153


>gi|288818121|ref|YP_003432469.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
 gi|288787521|dbj|BAI69268.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
 gi|308751722|gb|ADO45205.1| geranylgeranyl reductase [Hydrogenobacter thermophilus TK-6]
          Length = 371

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGKGHLV--REI 62
           YD++V+GGG AG   A  A+K G    L+  HK        C   +      HL    E 
Sbjct: 2   YDLVVVGGGPAGSSCAYHASKNGLKVLLLEKHKVPRFKL--CAGCLSKRISSHLPDGWEK 59

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
             L+ + G V   AG +   L   +  A    R + D  L   A       +E ++V+Q 
Sbjct: 60  LVLNRIKGGVLGYAGREDFELMNDQDIAYIVDRAEFDAFLLEKA------QEEGVEVLQE 113

Query: 123 -EVAGFNTEKNIISSIVMQDNSMI 145
            EV            +V    S  
Sbjct: 114 CEVLSIEANSGKCK-VVTSKGSFY 136


>gi|269964556|ref|ZP_06178795.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830683|gb|EEZ84903.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G    ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRRVLVLDH 35


>gi|238855932|ref|ZP_04646219.1| putative fumarate reductase [Lactobacillus jensenii 269-3]
 gi|282933411|ref|ZP_06338791.1| putative fumarate reductase [Lactobacillus jensenii 208-1]
 gi|238831449|gb|EEQ23799.1| putative fumarate reductase [Lactobacillus jensenii 269-3]
 gi|281302474|gb|EFA94696.1| putative fumarate reductase [Lactobacillus jensenii 208-1]
          Length = 488

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           +YD++V+G G +G  AA  AA+ G   AL+  K    G   
Sbjct: 2  ENYDLVVVGAGSSGISAALTAAEAGLKVALLE-KGDKFGGAG 42


>gi|91224915|ref|ZP_01260174.1| hypothetical protein V12G01_10853 [Vibrio alginolyticus 12G01]
 gi|91190161|gb|EAS76431.1| hypothetical protein V12G01_10853 [Vibrio alginolyticus 12G01]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G    ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRRVLVLDH 35


>gi|71083397|ref|YP_266116.1| hypothetical protein SAR11_0694 [Candidatus Pelagibacter ubique
          HTCC1062]
 gi|91762180|ref|ZP_01264145.1| HI0933-like protein [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062510|gb|AAZ21513.1| HI0933-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717982|gb|EAS84632.1| HI0933-like protein [Candidatus Pelagibacter ubique HTCC1002]
          Length = 393

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DVIV+G G AG  +A  A K G    L+ H
Sbjct: 1  MTEQFDVIVVGAGAAGMMSAIEAGKRGRKVLLVDH 35


>gi|254228520|ref|ZP_04921945.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262392717|ref|YP_003284571.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. Ex25]
 gi|151938902|gb|EDN57735.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262336311|gb|ACY50106.1| NAD(FAD)-utilizing dehydrogenase [Vibrio sp. Ex25]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G    ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRRVLVLDH 35


>gi|317484546|ref|ZP_07943454.1| glycerol-3-phosphate dehydrogenase [Bilophila wadsworthia 3_1_6]
 gi|316924207|gb|EFV45385.1| glycerol-3-phosphate dehydrogenase [Bilophila wadsworthia 3_1_6]
          Length = 429

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 1  MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          MI R+ YDV++ GGG +G  AA  AAK G  T L+T
Sbjct: 1  MIKRTPYDVMIAGGGLSGLSAALFAAKAGKRTLLVT 36


>gi|306845855|ref|ZP_07478423.1| hydroxyacylglutathione hydrolase [Brucella sp. BO1]
 gi|306273747|gb|EFM55585.1| hydroxyacylglutathione hydrolase [Brucella sp. BO1]
          Length = 442

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 73/247 (29%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRATDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            EVA    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEVADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           ++  + +
Sbjct: 237 LSGLVQH 243


>gi|158336488|ref|YP_001517662.1| pyridine nucleotide-disulfide oxidoreductase [Acaryochloris
          marina MBIC11017]
 gi|158306729|gb|ABW28346.1| pyridine nucleotide-disulphide oxidoreductase [Acaryochloris
          marina MBIC11017]
          Length = 318

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN------PAIGGLG 54
          M    +DV++IGGG AGC  A   ++    T ++      +G+++        P + G  
Sbjct: 1  MDTYEFDVVIIGGGPAGCTCALYTSRANFKTVILDKNP-AVGALAITHKIANYPGVAGDI 59

Query: 55 KG----HLVREIDALDGLMGRVA-----DAAGIQFRV 82
           G     ++RE     G   + A     D  G Q +V
Sbjct: 60 SGEELLTVMREQAMEFGTHYQQAQVFGLDITGAQKKV 96


>gi|152968657|ref|YP_001333766.1| 2,4-dieonyl-CoA reductase, FMN-linked [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953506|gb|ABR75536.1| 2,4-dieonyl-CoA reductase, FMN-linked [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 677

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +NR  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|46579051|ref|YP_009859.1| hypothetical protein DVU0637 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603365|ref|YP_967765.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris DP4]
 gi|46448464|gb|AAS95118.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563594|gb|ABM29338.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris DP4]
 gi|311232897|gb|ADP85751.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 57/208 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAK-LGASTALI---------------THKTSTIGSMS 45
           ++ ++DVIV+GGG AG  A+   A+  G    LI               T K        
Sbjct: 1   MSDAFDVIVVGGGPAGLFASYYLAEHSGLKVCLIERGQSVRKRGCPIAKTQKCMKCEPCH 60

Query: 46  CNPAIGG-----LGKGHLVREIDALD-------GLMGRVADAAGIQFRVLNVKKGP---- 89
               +GG      GK + + ++   D            + D     F    +  GP    
Sbjct: 61  ILSGMGGGGLFSDGKLNFIHKLGKTDLTQFLPRSQAEALIDETETIFNRFGM-DGPVFPS 119

Query: 90  ---AVRGPRTQADRE------------------LYRLAMQREILSQENLDVIQG-EVAGF 127
              A R  R QA +                    +  AM   + + + + +  G EV   
Sbjct: 120 DMDAARDIRKQAKKHGIDLLLIKQKHLGSDCLPDHIFAMCEHLAA-KGVTIRTGEEVRTV 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             E   +  +V        C +V++  G
Sbjct: 179 TVENGSVRGVVTDKG-EYACKSVIVAPG 205


>gi|330012029|ref|ZP_08307246.1| putative NADH oxidase [Klebsiella sp. MS 92-3]
 gi|328534018|gb|EGF60670.1| putative NADH oxidase [Klebsiella sp. MS 92-3]
          Length = 677

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +NR  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|317051161|ref|YP_004112277.1| hypothetical protein Selin_0986 [Desulfurispirillum indicum S5]
 gi|316946245|gb|ADU65721.1| HI0933 family protein [Desulfurispirillum indicum S5]
          Length = 393

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 15/181 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +++DV+++G G +G   AA A K G    ++ H T           + G G+ +      
Sbjct: 2   QNFDVVILGAGASGLMCAAQAGKRGRRVVVLDHNT----QAGRKVLVSGGGRCNFTNAQL 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           +    +              N     ++           Y +        Q   D    +
Sbjct: 58  SAGHYLSHNPHFVKSALSRFNQWDFLSLIS--------EYGIKWHEREHGQYFCDESAAQ 109

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL---RGVIHIGKLKIPAGRMGDSPSN 180
           V      +   SS  +   + I     +      L   RG      L +  G +   P  
Sbjct: 110 VVDMLLAECRRSSATVMLGTTIHSVERLEDGAFSLHTSRGGYRCRSLVVATGGLSIPPLG 169

Query: 181 S 181
           +
Sbjct: 170 A 170


>gi|163781575|ref|ZP_02176575.1| thioredoxin reductase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882795|gb|EDP76299.1| thioredoxin reductase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 325

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             YDVI+IG G AG  AA   ++ G  T ++
Sbjct: 12 EEVYDVIIIGAGPAGSTAALYTSRAGLKTVVL 43


>gi|153004860|ref|YP_001379185.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter sp. Fw109-5]
 gi|152028433|gb|ABS26201.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter sp. Fw109-5]
          Length = 481

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
          M  +++D +VIG G  G  AA   A+LG   AL+     T+G +     C P+   +   
Sbjct: 1  MATKTFDAVVIGAGVGGYPAAIRLAQLGKKVALVE--KETLGGVCLNWGCIPSKALIAAA 58

Query: 57 HLVREID 63
          +LV EI 
Sbjct: 59 NLVDEIK 65


>gi|302525281|ref|ZP_07277623.1| dihydrolipoyl dehydrogenase [Streptomyces sp. AA4]
 gi|302434176|gb|EFL05992.1| dihydrolipoyl dehydrogenase [Streptomyces sp. AA4]
          Length = 466

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
          M   ++DV+VIG G  G  AA  AAK G   AL+ H+         +C P+   L  G+L
Sbjct: 3  MAAETFDVVVIGAGPVGEVAAERAAKGGLKVALVEHERFGGECSYWACIPSKALLRPGNL 62

Query: 59 VREIDALDGL-MGRVADAAGIQFR 81
          +     + G+ +G   DA  +  R
Sbjct: 63 LAAAKRMPGVPIGDALDAEKVLAR 86


>gi|323697685|ref|ZP_08109597.1| thioredoxin reductase [Desulfovibrio sp. ND132]
 gi|323457617|gb|EGB13482.1| thioredoxin reductase [Desulfovibrio desulfuricans ND132]
          Length = 305

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 18/83 (21%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +YD +VIGGG AG  AA    + G  TA++              + GG     +  EI+
Sbjct: 2  ETYDAVVIGGGPAGMTAALYLLRAGVKTAMVE-----------KLSPGGQV--LMTSEIE 48

Query: 64 AL-----DGLMGRVADAAGIQFR 81
                       +AD       
Sbjct: 49 NYPGFPKGLQGWELADKFANHLE 71


>gi|299140172|ref|ZP_07033339.1| geranylgeranyl reductase [Acidobacterium sp. MP5ACTX8]
 gi|298597810|gb|EFI53981.1| geranylgeranyl reductase [Acidobacterium sp. MP5ACTX8]
          Length = 399

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+++G G AGC AA   A+ G    ++
Sbjct: 3  SYDVLILGAGPAGCSAAYDLARAGKRVLML 32


>gi|295102143|emb|CBK99688.1| putative alkyl hydroperoxide reductase F subunit
          [Faecalibacterium prausnitzii L2-6]
          Length = 550

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIGGG AG  AA   A+      ++
Sbjct: 3  MEQLYDVIVIGGGPAGLTAALYLARARYRVLVV 35


>gi|90021749|ref|YP_527576.1| dihydrolipoamide dehydrogenase [Saccharophagus degradans 2-40]
 gi|89951349|gb|ABD81364.1| dihydrolipoamide dehydrogenase [Saccharophagus degradans 2-40]
          Length = 484

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          ++  YDVIVIG G AG  AA   A+LG  TA I      
Sbjct: 1  MSNKYDVIVIGSGPAGYVAAIRCAQLGLKTACIEKWKDK 39


>gi|15965426|ref|NP_385779.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Sinorhizobium meliloti
          1021]
 gi|6739567|gb|AAF27309.1|AF155772_3 2-octaprenyl-6-methoxyphenol hydroxylase [Sinorhizobium meliloti]
 gi|15074607|emb|CAC46252.1| Oxidoreductase UbiH/COQ6 family [Sinorhizobium meliloti 1021]
          Length = 425

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD+ +IG G AG  AA   A+ G   AL+  + 
Sbjct: 25 HYDIAIIGAGLAGSLAAIALAREGHRVALVGPRP 58


>gi|86741621|ref|YP_482021.1| monooxygenase, FAD-binding [Frankia sp. CcI3]
 gi|86568483|gb|ABD12292.1| monooxygenase, FAD-binding [Frankia sp. CcI3]
          Length = 402

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+G   AG   A + A+ G    L+      +   S   +   L +  L+R +   
Sbjct: 2   YDVIVVGARCAGSPVAMLLARRGHRVLLV----DRVSFPSDTISTHYLQQAALLR-LREW 56

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD------- 118
             L    A        +     G  +RG     D   + +A +R +L +  LD       
Sbjct: 57  GLLDALTATNCRPITDMTVSHLGVVIRGFADPVDGLAFSMAPRRIVLDKLLLDGAVAAGV 116

Query: 119 -VIQG-EVAGFNT-EKNIISSIVMQD 141
            V +G  V      +   ++ IV +D
Sbjct: 117 EVREGFSVRDLIRHDDGTVAGIVGRD 142


>gi|83312554|ref|YP_422818.1| flavoprotein [Magnetospirillum magneticum AMB-1]
 gi|82947395|dbj|BAE52259.1| Predicted flavoprotein [Magnetospirillum magneticum AMB-1]
          Length = 396

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +DVIVIG G AG   AAVAA  G    ++ H             I G GK +
Sbjct: 8  FDVIVIGAGAAGLMCAAVAAGRGKRVVVLDHN----DQPGRKILISGGGKCN 55


>gi|15605692|ref|NP_213068.1| hypothetical protein aq_104 [Aquifex aeolicus VF5]
 gi|2982849|gb|AAC06471.1| hypothetical protein aq_104 [Aquifex aeolicus VF5]
          Length = 370

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 17/161 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI- 62
             +DV+V+G G +G  AA   ++ G    L+  K      +      GG   G   + + 
Sbjct: 2   ERFDVVVVGAGPSGSSAARYLSEKGLRVLLMERKK-----LPRFKLCGGALSGRFSKYLP 56

Query: 63  DALDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                 +  V     + FR     L  ++  A    R   D  L + AM++    +E   
Sbjct: 57  QDFKSKVLNVIHKGYLGFRGDKHKLKEREEVAYIIDRADFDHFLAQKAMEKGCELRE--- 113

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             + E+     EK  I  I+      + C  ++   G   +
Sbjct: 114 --ETELLDLWEEKGKI--ILDTTKGKVSCDFLIGADGFHSK 150


>gi|118592811|ref|ZP_01550200.1| FAD dependent oxidoreductase [Stappia aggregata IAM 12614]
 gi|118434581|gb|EAV41233.1| FAD dependent oxidoreductase [Stappia aggregata IAM 12614]
          Length = 455

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 73/224 (32%), Gaps = 41/224 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSCNPAIGGLG-KGH------ 57
           DV+VIGGG AG  AA  AA+ G S  L+   H    + S      +  +  +G+      
Sbjct: 23  DVVVIGGGPAGLSAAVSAARNGCSVTLLERYHHLGGMASGGMVLVLDDMVNEGNEIVTTG 82

Query: 58  LVRE----IDALDGLMGRVADAAGIQFRV----------LNVKKG-PAVRGPRTQADREL 102
           +V E    + A DG +    +     + +             K G P         D + 
Sbjct: 83  IVNEFVDRMSAQDGAVFPPPEDCLTNWEMWKKWSRWGCIDFHKTGMPQPIIHAVAFDPDC 142

Query: 103 YRLA---MQREILSQENLDVIQGEVAGFNTEKNIISSIV--MQDNSM-IRCSTVVLTTGT 156
           ++     + RE      L     E      E   ++ ++   +     ++   V+  +G 
Sbjct: 143 WKRVSLDLAREAGVHLRLHSWFSEA---LVEDGRVTGVICQTKLGRQAVKAKMVIDASGD 199

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
                     +   AG    +    +   F   D DT + +   
Sbjct: 200 L--------DVASSAGASFQTGQYIVTTVFRLCDVDTDKAEAFE 235


>gi|87300587|ref|ZP_01083429.1| NAD binding site [Synechococcus sp. WH 5701]
 gi|87284458|gb|EAQ76410.1| NAD binding site [Synechococcus sp. WH 5701]
          Length = 374

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S+DV+VIG G AG  A+   A+ G    L+
Sbjct: 8  QSWDVVVIGAGPAGALASLDLARRGLRVLLV 38


>gi|91976728|ref|YP_569387.1| HI0933-like protein [Rhodopseudomonas palustris BisB5]
 gi|91683184|gb|ABE39486.1| HI0933-like protein [Rhodopseudomonas palustris BisB5]
          Length = 414

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          DV VIG G AG  AA VAAK GA   +       + S +    + G G  +L   
Sbjct: 8  DVAVIGAGPAGLMAAEVAAKGGARVTVF----DGMSSAARKFLLAGRGGLNLTHS 58


>gi|307243905|ref|ZP_07526030.1| flavoprotein family protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492727|gb|EFM64755.1| flavoprotein family protein [Peptostreptococcus stomatis DSM 17678]
          Length = 411

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 139/417 (33%), Gaps = 70/417 (16%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---------ALDGLMGRV 72
             AA+ GA   +I         +     I G G+ ++    D              M   
Sbjct: 18  YFAAREGAHVTIIEKNKI----LGRKIRITGKGRCNVTNASDLDTIINNIYRNGNFMYSS 73

Query: 73  ADA-AGIQFRVLNVKKGPAVRGPRT-----QADREL-YRLAMQREILSQENLDVIQGE-V 124
             +        L    G  ++  R       +D+ +    AM++ + SQ  +++  G  V
Sbjct: 74  LYSFTNDDLIDLFESFGLKLKTERGNRVFPLSDKAIDVVKAMEKMLDSQA-VNIKTGAKV 132

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                + N +  +++ + + I    ++L TG     +           +       +L+ 
Sbjct: 133 RSILLDGNKVKGLILSNGTKIFADKIILATGGKSYPLTGSTGDGYTMAKECGHRVTNLYP 192

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKT----EKQFADERLIPFSFMTDKITNRQIEC 240
           S      +T +        L+ + I         E       L    +  D    +   C
Sbjct: 193 SL--IGMETVQDIKRDMVGLNLRNISIKLYKNSKEIYQGFGELEFREYGLDGPVIKSASC 250

Query: 241 GI----------------TRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
            I                  +N +    I+ + +  +  S +       +   I+  I +
Sbjct: 251 YIDDFQKNNYRILLDLKPALSNEKLDARILRDFEKYSNNSFETGLKDLLHKKMIDYIIDK 310

Query: 285 FG---ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAI 341
            G   ++  HQ+    E  +  +        +L + I     R  P +++  I   G  I
Sbjct: 311 VGIDRKKPVHQVS--KEERHRLL--------SLIKGIDFDIKRLRP-IDEAIITEGG--I 357

Query: 342 EYDYINPKELFPTLETKKISGLFLAGQI---NGTTGYEE---AAAQGLVAGINSARK 392
           E   +NP     T+E+K + GL+ AG+I   N  TG      A + G +AG +SAR+
Sbjct: 358 EVKEVNP----STMESKLVEGLYFAGEILDVNAFTGGFNLQIAFSTGYLAGTSSARE 410


>gi|284048824|ref|YP_003399163.1| thioredoxin reductase [Acidaminococcus fermentans DSM 20731]
 gi|283953045|gb|ADB47848.1| thioredoxin reductase [Acidaminococcus fermentans DSM 20731]
          Length = 305

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +++ YD+++IGGG AG  AA   A+ G +TA++  K S  G M+    +        V +
Sbjct: 1  MSKVYDILIIGGGPAGYTAALYGARSGFATAVLE-KLSPGGQMATTSDVENYPGFPGVVD 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
             L   M   A+ AG +     V K
Sbjct: 60 GFELGERMQEGAEKAGAETFFAEVSK 85


>gi|291300319|ref|YP_003511597.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Stackebrandtia nassauensis DSM 44728]
 gi|290569539|gb|ADD42504.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Stackebrandtia nassauensis DSM 44728]
          Length = 410

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 18/197 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK--GHLVREIDAL 65
           V V+G G  G E AA A +LG    +   +          P    LG   G    E+   
Sbjct: 149 VAVVGAGWIGLETAAAARELGCEVTVFEPQP--------TPLHAALGAEMGEFFAELHRR 200

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+  R+    G     +N   G          D E+   A+   + ++ N ++ +    
Sbjct: 201 HGVHLRL----GSGVSRINGSDGRVTSVVD-DNDEEVPADAVIVAVGARPNTELAERCGL 255

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL--RGVIHIGKLKIPAGRMGDSPSNSLF 183
             +    + +S+   D  +     V   T      R  +      +  G+          
Sbjct: 256 SVDNGVLVDASLRTDDADIYAAGDVANPTHPRYQRRVRVEHWDNALHGGQAAAKAMLGQD 315

Query: 184 NSFMKF-DFDTGRLKTG 199
             + +   F T +   G
Sbjct: 316 VDYDRLPYFFTDQYDVG 332


>gi|309389389|gb|ADO77269.1| dihydrolipoamide dehydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 562

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 13/155 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +  D+ +IG G  G  AA  AAK GA   L                 G +    LVR  
Sbjct: 95  EKKRDLAIIGAGPGGYVAALKAAKNGAQVTL----IEKNSLGGTCLNWGCVPTKALVRSA 150

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM-QREILSQENLDVIQ 121
           +  D L  + A   G +    N+         R   D+ + +L+   + +L +EN++ I+
Sbjct: 151 EVYDEL--KNAAEFGCKAE--NISFDWKEIIGRK--DKIVAQLSQGIKSLLDKENVEFIK 204

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G+      ++N +  +   +   I+   ++L TG+
Sbjct: 205 GKAE--LIDQNTVKVVQTAEEITIKTENIILATGS 237


>gi|222082503|ref|YP_002541868.1| FAD-dependent oxidoreductase protein [Agrobacterium radiobacter
          K84]
 gi|221727182|gb|ACM30271.1| FAD-dependent oxidoreductase protein [Agrobacterium radiobacter
          K84]
          Length = 425

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 27/67 (40%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDV VIGGG  G  AA   AK GA   ++   T   G+   N      G  H    
Sbjct: 22 LEGHYDVAVIGGGFTGLGAALQLAKAGAKVVVLEAGTVGSGASGRNGGHLNNGLAHSFIS 81

Query: 62 IDALDGL 68
            A  G+
Sbjct: 82 AKAELGV 88


>gi|84515885|ref|ZP_01003246.1| succinate dehydrogenase [Loktanella vestfoldensis SKA53]
 gi|84510327|gb|EAQ06783.1| succinate dehydrogenase [Loktanella vestfoldensis SKA53]
          Length = 601

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 73/253 (28%), Gaps = 60/253 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------------HKTSTIGSMS 45
             +YD IV+G G AG  A    A+ G  TA IT                      +G  S
Sbjct: 8   THTYDAIVVGAGGAGLRATLGLAEQGLRTACITKVFPTRSHTVAAQGGIAASLGNMGPDS 67

Query: 46  CNPAIGGLGKGHLVREIDALDGLMGRVA-------DAAGIQFRVLNVKK----------- 87
               +    KG            + R A       +  G+ F      K           
Sbjct: 68  WQWHMFDTVKGSDYLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTT 127

Query: 88  ----GPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIIS- 135
               GPAV+     ADR        LY  +++++         I+          + +  
Sbjct: 128 QFGEGPAVQRTCAAADRTGHAILHTLYGQSLKQKAEFY-----IEYFALDLIMSDDGVCQ 182

Query: 136 SIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF 189
            ++   + D +M       VVL TG + R            G   G      L    M+F
Sbjct: 183 GVIAWKLDDGTMHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARQGLALQDMEF 242

Query: 190 --DFDTGRLKTGT 200
                TG    G 
Sbjct: 243 VQFHPTGIYGAGC 255


>gi|15643632|ref|NP_228678.1| thioredoxin reductase [Thermotoga maritima MSB8]
 gi|4981404|gb|AAD35951.1|AE001753_7 thioredoxin reductase [Thermotoga maritima MSB8]
          Length = 317

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD++V+GGG AG  +A  A + G S                           LV E
Sbjct: 14  IKDKYDIVVVGGGPAGLTSAIYARRAGLSV--------------------------LVVE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G +        +   V N    PA+ G    +  + +              D+  
Sbjct: 48  KAIEGGYV-------NLTHLVENYPGFPAISGEELASKFKEHAEKFGA--------DIYN 92

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EV     + +    + + D   I    V++ TG 
Sbjct: 93  AEVVKLEVQGDK-KVVELDDGKRIEAPVVIVATGA 126


>gi|225867731|ref|YP_002743679.1| NADH dehydrogenase [Streptococcus equi subsp. zooepidemicus]
 gi|225869603|ref|YP_002745550.1| NADH dehydrogenase [Streptococcus equi subsp. equi 4047]
 gi|225699007|emb|CAW92094.1| NADH dehydrogenase [Streptococcus equi subsp. equi 4047]
 gi|225701007|emb|CAW97764.1| NADH dehydrogenase [Streptococcus equi subsp. zooepidemicus]
          Length = 510

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  AA  AA+ G +T L+ 
Sbjct: 209 YDVLVIGGGPAGNSAAIYAARKGLNTGLLA 238


>gi|118475601|ref|YP_891617.1| fumarate reductase flavoprotein subunit [Campylobacter fetus
          subsp. fetus 82-40]
 gi|118414827|gb|ABK83247.1| fumarate reductase flavoprotein subunit [Campylobacter fetus
          subsp. fetus 82-40]
          Length = 662

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  + YD +VIGGG AG  AA  A + G ST +++ 
Sbjct: 1  MNVKYYDALVIGGGLAGLRAAVAAGEKGLSTVVLSL 36


>gi|78044856|ref|YP_361186.1| thioredoxin-disulfide reductase [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77996971|gb|ABB15870.1| thioredoxin-disulfide reductase [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 307

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGKGHLVR 60
            YDVI+IG G AG  AA  +A+   ST L   K ST G  +    I    G   G    
Sbjct: 2  ERYDVIIIGAGPAGLSAALYSARSKLST-LYIEKLSTGGQAATTDEIENYPGFAHGISGP 60

Query: 61 EIDALDGLMGR 71
          E+ A      +
Sbjct: 61 ELTAQMEEQAK 71


>gi|52786724|ref|YP_092553.1| succinate dehydrogenase flavoprotein subunit [Bacillus
           licheniformis ATCC 14580]
 gi|163119579|ref|YP_080138.2| succinate dehydrogenase flavoprotein subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319647254|ref|ZP_08001476.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp.
           BT1B_CT2]
 gi|52349226|gb|AAU41860.1| SdhA [Bacillus licheniformis ATCC 14580]
 gi|145903089|gb|AAU24500.2| succinate dehydrogenase (flavoprotein subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|317390601|gb|EFV71406.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp.
           BT1B_CT2]
          Length = 587

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 75/248 (30%), Gaps = 31/248 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAEAGTNVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EV G     E       V+ D++  R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRFEVEGLVSKYEGWEFLGAVLDDDNTCRGIVAQNLTTMEIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIIFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFS 227
           D++L   S
Sbjct: 243 DDKLRLMS 250


>gi|333005942|gb|EGK25458.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri K-272]
 gi|333018812|gb|EGK38105.1| putative electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Shigella flexneri K-227]
          Length = 429

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  A  V A+ G    +         S  C    GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGSVAPLVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTL- 55

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E       +    +    + ++  + +  AV     +   ++ + A    + ++ +  ++
Sbjct: 56  EAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 121 QGE------------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +              V     E N ++ +   D  ++  + V+L  G
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADG 161


>gi|322369829|ref|ZP_08044391.1| geranylgeranyl reductase [Haladaptatus paucihalophilus DX253]
 gi|320550165|gb|EFW91817.1| geranylgeranyl reductase [Haladaptatus paucihalophilus DX253]
          Length = 455

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          ++  YD++V+G G +GC AAA  A+ G   A++  KT    G ++C  A+ G
Sbjct: 1  MSEQYDMVVVGAGTSGCYAAATVAREGYDVAVVERKTEEEAGHIACGDALKG 52


>gi|260434935|ref|ZP_05788905.1| thioredoxin reductase [Synechococcus sp. WH 8109]
 gi|260412809|gb|EEX06105.1| thioredoxin reductase [Synechococcus sp. WH 8109]
          Length = 319

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +DVI+IGGG AGC  A   A+   ST +          +  NPA+G L   H
Sbjct: 7  FDVIIIGGGPAGCSCALYTARSNLSTII----------LDKNPAVGALAITH 48


>gi|254883068|ref|ZP_05255778.1| NAD-utilizing dehydrogenase [Bacteroides sp. 4_3_47FAA]
 gi|254835861|gb|EET16170.1| NAD-utilizing dehydrogenase [Bacteroides sp. 4_3_47FAA]
          Length = 547

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 56/183 (30%), Gaps = 41/183 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                      +   N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVAPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-------KKGPAVRGPRTQADRELYRLA 106
           G G         DG +   +   G   ++LNV           A   P    D+      
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVNKILNVFCQHGANTSILADAHPHIGTDK------ 192

Query: 107 MQREILSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           + R I +  N  +        +  +     EKN I+ I        +   V+L TG   R
Sbjct: 193 LPRVIENMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSAR 251

Query: 160 GVI 162
            V 
Sbjct: 252 DVY 254


>gi|121595779|ref|YP_987675.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Acidovorax sp. JS42]
 gi|120607859|gb|ABM43599.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Acidovorax sp. JS42]
          Length = 537

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +  D +VIGGG AG  AA    + G    L+   T            GGL       
Sbjct: 1   MATQHSDTVVIGGGLAGIVAALELLRAGQRVTLVDRDTPE--------RFGGLA------ 46

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ---ADRELYRLAMQREIL---SQ 114
            + A  G M  V      + ++ +  +       R     AD    R   +  +    +Q
Sbjct: 47  -LRAFGG-MALVGTPLQAKMKIPDTPERALADWLRFGELDADDHWPRAWARHYVEHSRAQ 104

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            +  ++Q  V        +   +    NS+ R   V  T+    R +I   +      R+
Sbjct: 105 VHDWLLQEGVKFMPAVNWVERGLHGDGNSLPRYHIVWGTSRELTRCLIAALRRAGEGSRL 164


>gi|258646987|ref|ZP_05734456.1| putative alkyl hydroperoxide reductase F subunit [Dialister
          invisus DSM 15470]
 gi|260404428|gb|EEW97975.1| putative alkyl hydroperoxide reductase F subunit [Dialister
          invisus DSM 15470]
          Length = 540

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YD IV+GGG AG  AA   A+      +I      +G      +      G ++ +
Sbjct: 1  MEKMYDAIVVGGGPAGLSAAIYMARARFRVLVIE--KEKVGGQITITSEVVNYPGIIMTD 58

Query: 62 IDALDGLMGRVADAAGIQF 80
           + L G M + A+  G +F
Sbjct: 59 GEQLTGKMRQQAENFGAEF 77


>gi|171780096|ref|ZP_02921000.1| hypothetical protein STRINF_01884 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281444|gb|EDT46879.1| hypothetical protein STRINF_01884 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 510

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+VIGGG AG  AA  AA+ G  T L+ 
Sbjct: 209 FDVLVIGGGPAGNSAAIYAARKGIKTGLVA 238


>gi|46120450|ref|XP_385048.1| hypothetical protein FG04872.1 [Gibberella zeae PH-1]
          Length = 810

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDVIV+GGG AG  AA   A+ G S  LI    +   ++                +I A
Sbjct: 238 TYDVIVVGGGPAGIIAAERLAETGVSVLLIERGPANTVALGNTQQALPWNNTLTPYDIPA 297

Query: 65  LDGLMGRVA 73
           +   +G ++
Sbjct: 298 MGSSLGSMS 306


>gi|326444033|ref|ZP_08218767.1| putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 508

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD +V+GGGH G  AAA  A+ G S  ++    +T G+        G+
Sbjct: 1  MRTSYDAVVVGGGHNGLVAAAYLARAGRSVLVLERSPATGGAAVSARPFAGV 52


>gi|310778270|ref|YP_003966603.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Ilyobacter polytropus DSM 2926]
 gi|309747593|gb|ADO82255.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Ilyobacter polytropus DSM 2926]
          Length = 529

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD+IV+G G AG  AA  AAK G   A+ 
Sbjct: 2  KRYDLIVVGAGPAGLSAAIEAAKRGLEVAVF 32


>gi|254393133|ref|ZP_05008291.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|294815687|ref|ZP_06774330.1| Oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|197706778|gb|EDY52590.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|294328286|gb|EFG09929.1| Oxidoreductase [Streptomyces clavuligerus ATCC 27064]
          Length = 510

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD +V+GGGH G  AAA  A+ G S  ++    +T G+        G+
Sbjct: 3  MRTSYDAVVVGGGHNGLVAAAYLARAGRSVLVLERSPATGGAAVSARPFAGV 54


>gi|254391133|ref|ZP_05006340.1| electron transfer oxidoreductase [Streptomyces clavuligerus ATCC
           27064]
 gi|294814391|ref|ZP_06773034.1| Electron transfer oxidoreductase [Streptomyces clavuligerus ATCC
           27064]
 gi|326442781|ref|ZP_08217515.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
 gi|197704827|gb|EDY50639.1| electron transfer oxidoreductase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326990|gb|EFG08633.1| Electron transfer oxidoreductase [Streptomyces clavuligerus ATCC
           27064]
          Length = 428

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 37/177 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG  AA   AK G    L+  KT+      C   +       LV     + 
Sbjct: 11  DVIVVGAGPAGSTAAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLVSMGIDIS 69

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL------YRLAMQREILSQENLDVI 120
              G + +        L +  G    G R Q D         Y L  +R+   ++     
Sbjct: 70  EEAGWLRNKG------LRIIGG----GMRLQLDWPELAAYPDYGLVRKRDDFDEQ--LAR 117

Query: 121 QGEVAG-------------FNTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
           Q + AG              +     I+ +  +              VV   G   R
Sbjct: 118 QAQKAGARLYERCNVGAPVIDARTGRITGVEAKLGEERTPVTFHAPLVVAADGNSSR 174


>gi|183220022|ref|YP_001838018.1| putative FAD binding dehydrogenase [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910143|ref|YP_001961698.1| oxidoreductase [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|167774819|gb|ABZ93120.1| Oxidoreductase [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|167778444|gb|ABZ96742.1| Putative FAD binding dehydrogenase [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 537

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLG 54
          M  + YDV +IG G AG  AA      G    LI   T    G ++   + GG+ 
Sbjct: 1  MEIKKYDVTIIGAGIAGMVAAYECLNKGLKVLLIDRNTKEHFGGLA-KLSFGGMA 54


>gi|159039976|ref|YP_001539229.1| geranylgeranyl reductase [Salinispora arenicola CNS-205]
 gi|157918811|gb|ABW00239.1| geranylgeranyl reductase [Salinispora arenicola CNS-205]
          Length = 423

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 25/148 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G  G   A   A+ G    L+  KT       C   +       LVR      
Sbjct: 8   DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLVR------ 60

Query: 67  GLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-- 122
             MG     +A  ++ R L V  G    G R + D          ++ S  N  +++   
Sbjct: 61  --MGVDTSVEAGWLRNRGLRVIGG----GLRLELD--------WPDLASFPNYGLVRTRL 106

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTV 150
           +       + + +   ++    +   T+
Sbjct: 107 DFDDLLARQAVSAGAKLRTGVEVTGPTL 134


>gi|290476181|ref|YP_003469081.1| 2-octoprenyl-3-methyl-6-methoxy-1, 4-benzoquinone hydroxylase
           [Xenorhabdus bovienii SS-2004]
 gi|289175514|emb|CBJ82317.1| 2-octoprenyl-3-methyl-6-methoxy-1, 4-benzoquinone hydroxylase
           [Xenorhabdus bovienii SS-2004]
          Length = 398

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 22/176 (12%)

Query: 1   MIN-----RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           M+N     + +D++V+G G  G   A   A+ G   AL+ H+     +    P I     
Sbjct: 1   MMNMNNPQQKFDIVVVGAGMVGAATALGLAQEGWRVALLEHQLPQPYNEGNEPDIRVSAI 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNV-------------KKGPAVRGPRTQADREL 102
                ++    G+   V       +R L                 G    G     +  +
Sbjct: 61  SCASVDLLKQLGVWNHVLRMRSAPYRKLETWEQHDSNVTFDVQSLGLTELG--YMVENYI 118

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGT 156
            +LA+ +E     NL +           +  + I  + + D + +    ++   G 
Sbjct: 119 LQLALWQEFERYPNLTLFCPAALKSMQRQHAHQIWQVTLMDGTEMNARLIIGADGA 174


>gi|291287350|ref|YP_003504166.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Denitrovibrio acetiphilus DSM 12809]
 gi|290884510|gb|ADD68210.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Denitrovibrio acetiphilus DSM 12809]
          Length = 456

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SY+V+VIG G AG EAA   A  G    LI
Sbjct: 6  SYEVVVIGAGPAGIEAAKKLADNGKKVLLI 35


>gi|157165747|ref|YP_001467269.1| fumarate reductase flavoprotein subunit [Campylobacter concisus
          13826]
 gi|112802031|gb|EAT99375.1| fumarate reductase flavoprotein subunit [Campylobacter concisus
          13826]
          Length = 672

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  + YD +VIGGG AG  AA  A + G ST +++ 
Sbjct: 1  MNVKYYDALVIGGGLAGLRAAVAAGEKGLSTVVLSL 36


>gi|229492258|ref|ZP_04386066.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
 gi|229320884|gb|EEN86697.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
          Length = 466

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +N  YDV+V+G G  G  AA  AA LG STA++  K        +G +     +      
Sbjct: 1   MNSHYDVVVLGAGPGGYVAAIRAAHLGLSTAVVEEKYWGGVCLNVGCIPSKALLRHAEIA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           HLV +  ++ G+ G  +   G+ F           +G      +   R    R +    N
Sbjct: 61  HLVTDGASMFGIEGVTSVDFGVAFDRSRSVADGRTKGVNYLMKKNGIRQYNGRGVFRGPN 120

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIR 146
                 EV+G ++      ++++   +  R
Sbjct: 121 TL----EVSGVDSATITFDNVIIASGAEPR 146


>gi|58584818|ref|YP_198391.1| dihydrolipoamide dehydrogenase E3 component [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
 gi|58419134|gb|AAW71149.1| Dihydrolipoamide dehydrogenase E3 component [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
          Length = 462

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +YD+IVIGGG +G + A  AAKLG   A I   
Sbjct: 2  NNYDLIVIGGGPSGYKCAIAAAKLGLKVACIDKN 35


>gi|189346430|ref|YP_001942959.1| Thioredoxin-disulfide reductase [Chlorobium limicola DSM 245]
 gi|189340577|gb|ACD89980.1| Thioredoxin-disulfide reductase [Chlorobium limicola DSM 245]
          Length = 313

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 45/173 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHL 58
           M    YDVI+IGGG AG  AA   ++    T +I        +G         G+     
Sbjct: 1   MQTGLYDVIIIGGGPAGSSAALYTSRAVLKTLVIDKDPHAGALGMAHHIANYPGIPDSLS 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             E+     LM R A + G ++                                      
Sbjct: 61  GMELLE---LMKRQAVSFGAEY-------------------------------------- 79

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            ++ +V G + +     ++        R  T++L TG   +     G+ ++  
Sbjct: 80  -VRDKVTGIDPDGAE-KAVFTVSGKYYRAKTLILATGAMGKSSEIPGEKQLVG 130


>gi|23016561|ref|ZP_00056315.1| COG1251: NAD(P)H-nitrite reductase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 819

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 32/205 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +    +VIGGG  G EAA    + G   AL          +   P +       + R++
Sbjct: 146 EKQQRAVVIGGGLLGLEAAWGLKRRGMPVAL----------VHLMPTL-------MERQL 188

Query: 63  DAL-DGLMGRVADAAGIQF-------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           D    GL+ +     G+ F        ++  ++G A +G +    RE+    +   I  +
Sbjct: 189 DVEAGGLLQKDLTERGLHFFTSGQTEEIMGAEEGCA-KGVKLTDGREIPADLVVVAIGIR 247

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL-----KI 169
            N+D+ +      N    +   +   D ++      V   G     V  I +        
Sbjct: 248 PNVDLAKAAGLDINRGIEVGDDMATSDPAIFSVGECVEHRGQIFGLVAPIWEQAKVCASR 307

Query: 170 PAGRMGDS-PSNSLFNSFMKFDFDT 193
            AGR      +  L         D 
Sbjct: 308 LAGRDEAHYETPPLSTRLKITGIDV 332


>gi|329894339|ref|ZP_08270209.1| Soluble pyridine nucleotide transhydrogenase [gamma proteobacterium
           IMCC3088]
 gi|328923135|gb|EGG30458.1| Soluble pyridine nucleotide transhydrogenase [gamma proteobacterium
           IMCC3088]
          Length = 464

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D++VIG G AG  AA  AAK     A+I   T   G+ +    I      H V+
Sbjct: 1   MPKTGFDLVVIGSGPAGESAALNAAKQQKKVAVIEVNTQVGGACTHKGTIPSKALRHTVK 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKG-PAVRGPRTQADRELYRLAMQREILSQENLDV 119
           ++         +    G  FR +   +  P     +        ++ M+ +   + N+ V
Sbjct: 61  QL---------MRFNNGTLFREIGHSRQIPYPTVLKHAISVVEQQVDMRSKFYGRNNIAV 111

Query: 120 IQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
            +G     N       S+   D S   +     V+ TG+      H   +     R+ DS
Sbjct: 112 YKGRAKFINDHNL---SVTRADGSVEELHSQEFVIATGSRP---YHPPDVPFEHSRVYDS 165

Query: 178 PSN-SLFNSFMKF 189
            +  SL ++  K 
Sbjct: 166 DTILSLEHTPRKL 178


>gi|322420706|ref|YP_004199929.1| monooxygenase FAD-binding protein [Geobacter sp. M18]
 gi|320127093|gb|ADW14653.1| monooxygenase FAD-binding protein [Geobacter sp. M18]
          Length = 432

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++RSY  IV+G G AG  AA   A+ G   ALI
Sbjct: 1  MSRSYQAIVVGAGPAGSSAALTMARAGLDVALI 33


>gi|197122444|ref|YP_002134395.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter sp. K]
 gi|196172293|gb|ACG73266.1| dihydrolipoamide dehydrogenase [Anaeromyxobacter sp. K]
          Length = 484

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M  ++YD IVIG G  G  AA   A+LG  T  +  K +T+G +     C P+   +   
Sbjct: 1   MPTQTYDAIVIGAGTGGYPAAIRLAQLG-KTVALVEKDATLGGVCLNWGCIPSKALIAAA 59

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           +LV E+       G +A+   +    L   K   V+                  +     
Sbjct: 60  NLVDEMRGAADR-GIIAEPPRVDVAKLREFKDGVVKKLTGGV----------ALLEKGNG 108

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGT 156
           ++V++G           ++    +D    R     +++ TG 
Sbjct: 109 VEVVRGTATVVAPNAVEVAG---KDGQKTRLEAGAILVATGA 147


>gi|256545796|ref|ZP_05473152.1| FixC protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398492|gb|EEU12113.1| FixC protein [Anaerococcus vaginalis ATCC 51170]
          Length = 430

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 28/172 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVI++GGG AG  AA V A+      L+                GG   GH + 
Sbjct: 1   MSEDKFDVIIVGGGVAGLSAAIVLAENDLEVMLV----ERGDYCGAKNVTGGRLYGHSLE 56

Query: 61  ------------EIDALDGLMGRVADAA----GIQFRVLNVKKGPAVRGPRTQADRELYR 104
                       E   +   +  +++ +    G   + L   K  +     ++ D+ L  
Sbjct: 57  KIIPNFAEEAPIERKVVKEKISMMSEKSSFDIGFSSKALGKDKDSSYVVLHSKFDQYLAD 116

Query: 105 LAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            A       +  + +I G  V     E   +   +      +    V++  G
Sbjct: 117 KA------EEAGVSIISGVLVEKLLVEDGKVVG-IDATGEEVFADVVIIADG 161


>gi|330819035|ref|XP_003291571.1| hypothetical protein DICPUDRAFT_49927 [Dictyostelium purpureum]
 gi|325078239|gb|EGC31901.1| hypothetical protein DICPUDRAFT_49927 [Dictyostelium purpureum]
          Length = 475

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N+++D+IV+G G AG   A      G     I    S    +       G  K   +RE+
Sbjct: 12  NKNFDIIVVGAGVAGSAFAYSMGCKGKKVLCIERDLSEPDRIVGELMQPGGVK--ALREL 69

Query: 63  DALDGLMGRVADAAGI-QFRVLNVKKGPAVRGPRTQADRE------------LYRLAMQR 109
                      D++ +  + +    KG  +  P+   D+              +   ++ 
Sbjct: 70  GME--ECLEGIDSSLVFGYGIFKQNKGVKLAYPK---DKNGGIINGFSFHHGRFIQKLRF 124

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIV 138
           +  S EN+ +++G V     E  ++  + 
Sbjct: 125 KASSCENVFMVEGTVNALIEENGVVLGVK 153


>gi|312143958|ref|YP_003995404.1| FAD dependent oxidoreductase [Halanaerobium sp. 'sapolanicus']
 gi|311904609|gb|ADQ15050.1| FAD dependent oxidoreductase [Halanaerobium sp. 'sapolanicus']
          Length = 491

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 67/211 (31%), Gaps = 55/211 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTST------IGSMSC 46
           +++ YDVI+IG G +GC  A   A+      L+         T K +T        +   
Sbjct: 1   MSKKYDVIIIGAGISGCAVAWRIARYDLDILLLDKEADIATGTTKANTAIIHAGYNADPK 60

Query: 47  NPAIGGLGKGHL-VREI--------DALDGLM-------------------------GRV 72
                   KG++ ++EI        + +  L+                          ++
Sbjct: 61  KLKGRLNNKGNIQIKEIVKDLNIPFEEIGSLVVGVEGDDLSVLDDLLEKGKENGVEGLKI 120

Query: 73  ADAAGIQFRVLNVKKG--PAVRGPRTQADR-ELYRLAMQR-EILSQENLDVIQGEVAGFN 128
            D   ++    N+ +    A+  P         + LAM    +++   + + + +V    
Sbjct: 121 VDKEWLRENEPNIAENAVAALWAPTAGIITPWEFALAMAENAVVNGAEVQL-ETKVEDII 179

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            E + +  +            V+   G +  
Sbjct: 180 IEDDRVVGVKTNQG-EFEADYVINAAGVYAD 209


>gi|296156146|ref|ZP_06838985.1| Electron-transferring-flavoprotein dehydrogenase [Burkholderia sp.
           Ch1-1]
 gi|295893652|gb|EFG73431.1| Electron-transferring-flavoprotein dehydrogenase [Burkholderia sp.
           Ch1-1]
          Length = 436

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 46/169 (27%), Gaps = 28/169 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSMSCN 47
            +D IV+G G +G  AA   AK G                     L       I      
Sbjct: 6   QFDAIVVGAGPSGNAAAYTMAKAGLKVLQIERGEYPGSKNVQGAILYAKALEEI-----I 60

Query: 48  PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           P         L R I      M       G   R     K P     R    R  +    
Sbjct: 61  PDFRDDA--PLERHIIEQRIWMLDDTSFVGTHMRSEEYNKPP---YNRYTIIRAQFDKWF 115

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG 155
             ++     L + +  V     + + +  +   +++  +    VVL  G
Sbjct: 116 SSKVREAGALLICETTVKELIMDGDQVVGVQCDREHGDVYADVVVLADG 164


>gi|220682044|gb|ACL80150.1| halogenase [Planobispora longispora]
          Length = 480

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 26/176 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS-MSCNPAIGGLGKGHLV 59
            S+DVIV+GGG AG  AA   A  G    L+   +     IG  +  +  +G      + 
Sbjct: 11  ESFDVIVVGGGPAGSSAATFVALQGHRVLLLEKESFPRHQIGESLLPSTVLGICALLGVS 70

Query: 60  REIDALDGLMGRVADAAGIQFRVLN-----------VKKGPAVRGPRTQADRELYRLAMQ 108
            E+ +            G  FR  +            +K         Q +R  +   + 
Sbjct: 71  EELHSAG-----FVKKHGGTFRWGSNTEPWTFDFALSEKFAGPTSYAYQVERMKFDQLLL 125

Query: 109 REILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDNS--MIRCSTVVLTTGTFLR 159
                ++ + V +   V     +   ++ +    +D +    R   VV  +G   R
Sbjct: 126 DNAR-RKGVVVRERCAVRDVLEDGGRVNGVRYTDEDGTERETRARFVVDASGNQSR 180


>gi|261406584|ref|YP_003242825.1| monooxygenase FAD-binding protein [Paenibacillus sp. Y412MC10]
 gi|261283047|gb|ACX65018.1| monooxygenase FAD-binding protein [Paenibacillus sp. Y412MC10]
          Length = 383

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 49/169 (28%), Gaps = 25/169 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++  DV+VIG G AG   A   AK G  T L                  G       RE
Sbjct: 1   MSKQADVMVIGAGVAGTSCALQLAKQGHRTIL----LDRQSFPRHKTC--GEFMSPETRE 54

Query: 62  IDALDGLMGR-------VADAAGIQFRVLNVKKGP----AVRGPRTQADRELYRLAMQRE 110
           +    G+  +         D A I      V   P    A    R + DR L+  A+   
Sbjct: 55  MLEYLGVHLQVQEVNPAAMDHASIVMPHGGVITAPLPGKATGISRYELDRLLHESAVSAG 114

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM---IRCSTVVLTTGT 156
                   V    V       +    I  +  +         V+   GT
Sbjct: 115 AE-----IVTGSAVTEIRKRGDHRYEIETRQGNEQIRYEARAVIGAYGT 158


>gi|163794539|ref|ZP_02188510.1| Mercuric reductase MerA [alpha proteobacterium BAL199]
 gi|159180263|gb|EDP64786.1| Mercuric reductase MerA [alpha proteobacterium BAL199]
          Length = 475

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLV 59
          S+D+ V+G G AG  AA  AA LGA  ALI H T       IG +     I  +      
Sbjct: 13 SFDLAVVGAGSAGFSAAITAADLGARVALIGHGTIGGTCVNIGCVPSKTLIRAVEAVRGA 72

Query: 60 REIDALDGLMG--RVAD 74
          R      G+ G  R+AD
Sbjct: 73 RTASRFGGIAGNARIAD 89


>gi|18857710|emb|CAD24021.1| FixC protein [Rhizobium leguminosarum bv. viciae]
          Length = 274

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IVIG G +G  AA   A+ G                     L  +    I  
Sbjct: 1   MTKSKFDAIVIGAGMSGNAAAYSMARRGLKVLQLERGEHSGSKNVQGAILYANMLEAI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
               P         L R +      +   +   G+ +R  +  +   ++  R    R  +
Sbjct: 59  ---IPNFRDDA--PLERHLVEQRFWLMDDSSHTGVHYRSDDFNE---LKPNRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNI-ISSIVM-QDNSMIRCSTVVLTTG 155
                 ++       + +        +++  +  +   ++  +I    VVL  G
Sbjct: 111 DKWFSSKVREAGGTVLCETTATKLARDRSGSVIGVYTDREGGVILADVVVLAEG 164


>gi|21222942|ref|NP_628721.1| electron transfer oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|256785944|ref|ZP_05524375.1| electron transfer oxidoreductase [Streptomyces lividans TK24]
 gi|289769836|ref|ZP_06529214.1| electron transfer oxidoreductase [Streptomyces lividans TK24]
 gi|5042280|emb|CAB44534.1| putative electron transfer oxidoreductase [Streptomyces coelicolor
           A3(2)]
 gi|289700035|gb|EFD67464.1| electron transfer oxidoreductase [Streptomyces lividans TK24]
          Length = 430

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 19/168 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   A+ G    L+  KT+      C   +       LV     + 
Sbjct: 14  DVIVVGAGPAGSTTAYHLARSGLDVLLLE-KTAFPREKVCGDGLTPRAVKQLVAMGIDIS 72

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +         + +Q    ++   P   +   R   D +L R A +      E 
Sbjct: 73  EEAGWLRNKGLRIIGGGSRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYER 132

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLR 159
            +V    V         I+ +  +              VV   G   R
Sbjct: 133 CNVGAPIVDD---RTGRITGVHAKLGEDKREVTFHAPLVVAADGNSTR 177


>gi|322647685|gb|EFY44170.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
          Length = 113

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61 EI 62
           I
Sbjct: 57 RI 58


>gi|255561482|ref|XP_002521751.1| Squalene monooxygenase, putative [Ricinus communis]
 gi|223538964|gb|EEF40561.1| Squalene monooxygenase, putative [Ricinus communis]
          Length = 458

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 14/154 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 31  DIIIVGAGVAGSALAYTLGKDGRRVHVIERDLSLQDRIVGELLQPGGYLKLIELGLEDCV 90

Query: 60  REIDALDGLMGRVADAAG--IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
            EIDA   + G      G   +           V G      R  +   M+ +  S  N+
Sbjct: 91  EEIDAQQ-VFGYALYKNGRSTKLSYPLESFDSDVSGRSFHNGR--FIQRMREKAASLPNV 147

Query: 118 DVIQGEVAGFNTEKNIISSI--VMQDNSMIRCST 149
            + +G V      K  I  +    ++   +  S 
Sbjct: 148 RLEEGTVTSLLEVKGTIKGVQYKTKNGEELTASA 181


>gi|213584467|ref|ZP_03366293.1| putative oxidoreductase FixC [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 110

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D I++G G AG  AA V A+ GA   +         S       GG    H + 
Sbjct: 1  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGRLYAHSLE 56

Query: 61 EI 62
           I
Sbjct: 57 RI 58


>gi|223938053|ref|ZP_03629951.1| tryptophan halogenase [bacterium Ellin514]
 gi|223893267|gb|EEF59730.1| tryptophan halogenase [bacterium Ellin514]
          Length = 423

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 32/176 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YD I+IGGG AG  AAA+ A+ G    +I    +         ++       L R 
Sbjct: 1   MSENYDAILIGGGPAGSCAAAILAEYGHRVLIIE--RAKFPRYHIGESLIPFTFAPLER- 57

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ-------ADRELYRLAMQ--REIL 112
                  +G +       F            G R+Q        DRE      Q  R   
Sbjct: 58  -------IGMIPKMKASHFVKKYSVTFVQPDGRRSQPFYFFNRYDRETVAQTWQVLRSEF 110

Query: 113 SQENLD--------VIQGE-VAGFNTEKNIISSIVMQDNS----MIRCSTVVLTTG 155
            Q  LD        V +   V     E   +  +   D S     +R    +  TG
Sbjct: 111 DQMLLDNAREKGAEVREETNVNRLLVEGGKVVGVEATDKSGRTYEVRAPITLDCTG 166


>gi|157149758|ref|YP_001449897.1| thioredoxin-disulfide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157074552|gb|ABV09235.1| thioredoxin-disulfide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 304

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 43/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I+IG G AG  AA  AA+     AL+                          E    
Sbjct: 2   YDTIIIGAGPAGMTAALYAARSNLKVALL--------------------------EAGIP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD       V N   G A+      A++      M   + +     +  G V 
Sbjct: 36  GGQMNNTAD-------VENYP-GYALISGPELAEK------MFEPLENLGVEHIF-GHVQ 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               + +    ++ +D  +    TV++ TG F R
Sbjct: 81  RIEDQGDS-KKVITED-EVYESKTVIIATGAFHR 112


>gi|325970267|ref|YP_004246458.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Spirochaeta sp. Buddy]
 gi|324025505|gb|ADY12264.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Spirochaeta sp. Buddy]
          Length = 453

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  YD++V+GGG AG  AA  A + G S  LI
Sbjct: 6  HTPYDLVVVGGGIAGSMAAVAAGREGLSVLLI 37


>gi|320035414|gb|EFW17355.1| monoamine oxidase N [Coccidioides posadasii str. Silveira]
          Length = 500

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          + YDVIV+G G+AG  AA  AA+ G +  L+  +   IG  S +  I G  
Sbjct: 47 QVYDVIVVGAGYAGLTAARNAAREGLNILLLEAR-DRIGGRSWSSNIDGYA 96


>gi|303315471|ref|XP_003067743.1| Monoamine oxidase, putative [Coccidioides posadasii C735 delta
          SOWgp]
 gi|240107413|gb|EER25598.1| Monoamine oxidase, putative [Coccidioides posadasii C735 delta
          SOWgp]
          Length = 500

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          + YDVIV+G G+AG  AA  AA+ G +  L+  +   IG  S +  I G  
Sbjct: 47 QVYDVIVVGAGYAGLTAARNAAREGLNILLLEAR-DRIGGRSWSSNIDGYA 96


>gi|208779486|ref|ZP_03246831.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254373454|ref|ZP_04988942.1| conserved hypothetical protein [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|151571180|gb|EDN36834.1| conserved hypothetical protein [Francisella novicida GA99-3549]
 gi|208744447|gb|EDZ90746.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|332678827|gb|AEE87956.1| conserved hypothetical protein with Rossman fold [Francisella cf.
          novicida Fx1]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          N +YDVI+IG G AG   A  AAK    T +          +     + G G+ +
Sbjct: 5  NNNYDVIIIGAGAAGLMCAIEAAKRARKTLV----LDHANKIGKKILMSGGGRCN 55


>gi|118498102|ref|YP_899152.1| hypothetical protein FTN_1533 [Francisella tularensis subsp.
          novicida U112]
 gi|194323328|ref|ZP_03057112.1| conserved hypothetical protein [Francisella tularensis subsp.
          novicida FTE]
 gi|118424008|gb|ABK90398.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194322692|gb|EDX20172.1| conserved hypothetical protein [Francisella tularensis subsp.
          novicida FTE]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          N +YDVI+IG G AG   A  AAK    T +          +     + G G+ +
Sbjct: 5  NNNYDVIIIGAGAAGLMCAIEAAKRARKTLV----LDHANKIGKKILMSGGGRCN 55


>gi|119191049|ref|XP_001246131.1| hypothetical protein CIMG_05572 [Coccidioides immitis RS]
          Length = 500

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          + YDVIV+G G+AG  AA  AA+ G +  L+  +   IG  S +  I G  
Sbjct: 47 QVYDVIVVGAGYAGLTAARNAAREGLNILLLEAR-DRIGGRSWSSNIDGYA 96


>gi|298292859|ref|YP_003694798.1| thiamine biosynthesis Thi4 protein [Starkeya novella DSM 506]
 gi|296929370|gb|ADH90179.1| thiamine biosynthesis Thi4 protein [Starkeya novella DSM 506]
          Length = 531

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVI++G GH+G  A    A+ G    ++
Sbjct: 3  KYDVIIVGAGHSGLVAGFYLARAGLKVLML 32


>gi|238925193|ref|YP_002938710.1| NADH:flavin oxidoreductase [Eubacterium rectale ATCC 33656]
 gi|238876869|gb|ACR76576.1| NADH:flavin oxidoreductase [Eubacterium rectale ATCC 33656]
          Length = 666

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAE 417


>gi|160916236|ref|ZP_02078443.1| hypothetical protein EUBDOL_02263 [Eubacterium dolichum DSM 3991]
 gi|158431960|gb|EDP10249.1| hypothetical protein EUBDOL_02263 [Eubacterium dolichum DSM 3991]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 44/172 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R YD+++IG G AG  AA   ++ G    ++              A    GK     E
Sbjct: 1   MERRYDLVIIGAGPAGMSAAIYGSRAGLRVVMLE-------------AGAPGGKLIKTAE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I    G++G             +   G              Y   ++             
Sbjct: 48  ISNWPGIVGTNGAQLASNMFEHSTSFGA----------EYAYGNVVK------------- 84

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                   E      ++ +D S+     V++ TGT  R ++HI   +   GR
Sbjct: 85  -------VEDGEYKRVICEDGSVFEGKAVIVATGTKER-MMHIPGEEENVGR 128


>gi|145309072|gb|ABP57752.1| DepH [Chromobacterium violaceum]
          Length = 319

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNP-AIGGLG 54
          +DVIVIGG HAG  AA   A+      +I          +     IG    +P AI   G
Sbjct: 28 FDVIVIGGSHAGQSAALQIARARRRVLVIDAGARRNRFASQSHGVIGQDGRSPDAIAADG 87

Query: 55 KGHLV 59
          K  L+
Sbjct: 88 KAQLL 92


>gi|91778672|ref|YP_553880.1| electron-transferring-flavoprotein dehydrogenase [Burkholderia
           xenovorans LB400]
 gi|91691332|gb|ABE34530.1| Electron-transferring-flavoprotein dehydrogenase [Burkholderia
           xenovorans LB400]
          Length = 436

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 46/169 (27%), Gaps = 28/169 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSMSCN 47
            +D IV+G G +G  AA   A+ G                     L       I      
Sbjct: 6   QFDAIVVGAGPSGNAAAYTMARAGLKVLQIERGEYPGSKNVQGAILYAKALEEI-----I 60

Query: 48  PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           P         L R I      M       G   R     K P     R    R  +    
Sbjct: 61  PDFRDDA--PLERHIIEQRIWMLDDTSFVGTHMRSEEYNKPP---YNRYTIIRAQFDKWF 115

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVM-QDNSMIRCSTVVLTTG 155
             ++     L + +  V     + + +  +   +++  +    VVL  G
Sbjct: 116 SSKVREAGALLICETTVKQLIMDGDQVVGVQCDREHGDVYADVVVLADG 164


>gi|238790508|ref|ZP_04634276.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Yersinia frederiksenii ATCC 33641]
 gi|238721377|gb|EEQ13049.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Yersinia frederiksenii ATCC 33641]
          Length = 429

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 25/153 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +D IV+G G AGC A  V AK G    +         +       GG    H + 
Sbjct: 1   MSEEKFDAIVVGAGVAGCIAGYVMAKAGLDVLV----IERGNTAGSKNMTGGRLYAHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGI----QFRVLNVKKGPAVRGPRTQADRELYR 104
                       E       +  + D + +         +V    +    R + D  L  
Sbjct: 57  RIMPGFAQEAPVERKVTKEKISFLTDESAVTLDFHSEQPDVPHKASYTVLRNRFDPWLME 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
            A +  +     +      V     + N ++ +
Sbjct: 117 KAEEAGVQFIPGVR-----VDALLRDGNRVTGV 144


>gi|291525823|emb|CBK91410.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Eubacterium
           rectale DSM 17629]
 gi|291527449|emb|CBK93035.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Eubacterium
           rectale M104/1]
          Length = 666

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAE 417


>gi|160901998|ref|YP_001567579.1| hypothetical protein Pmob_0522 [Petrotoga mobilis SJ95]
 gi|160359642|gb|ABX31256.1| HI0933 family protein [Petrotoga mobilis SJ95]
          Length = 431

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V ++GGG AG  AA  A++ G  T LI    STIG ++    I    K  L  +I  + G
Sbjct: 7   VTIVGGGIAGFHAAIAASRSGLKTLLIEKN-STIGGLTTLGLINPFMKYWLDNQI-LIKG 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           +   + +           +KG          D EL ++ M + +   E   + +  V   
Sbjct: 65  IFQELIERL--------KRKGGVFFNT---FDSELMKIEMMKMLKESEVELLFKTMVTEV 113

Query: 128 NTEKNIISSIV 138
             E+N I S+ 
Sbjct: 114 IKEENKIISLK 124


>gi|330723910|gb|AEC46280.1| thioredoxin reductase [Mycoplasma hyorhinis MCLD]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 41/155 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDV++IG G AG   A  A++     AL+              A GG        
Sbjct: 1   MEVKKYDVLIIGAGPAGMTTALYASRGNLKVALLE-----------KGAPGGKLVSQSKI 49

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +     M + AD A                         +Y   ++  +         
Sbjct: 50  E-NWPGDEMIQGADLAL-----------------------RMYNHVLKFGVEHNYC---- 81

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             EV    +      +IV +D +      VV+ +G
Sbjct: 82  --EVKEVISNSEFSKAIVCEDGTRYEAKAVVVASG 114


>gi|304373227|ref|YP_003856436.1| Thioredoxin reductase [Mycoplasma hyorhinis HUB-1]
 gi|304309418|gb|ADM21898.1| Thioredoxin reductase [Mycoplasma hyorhinis HUB-1]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 41/155 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YDV++IG G AG   A  A++     AL+              A GG        
Sbjct: 1   MEVKKYDVLIIGAGPAGMTTALYASRGNLKVALLE-----------KGAPGGKLVSQSKI 49

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E +     M + AD A                         +Y   ++  +         
Sbjct: 50  E-NWPGDEMIQGADLAL-----------------------RMYNHVLKFGVEHNYC---- 81

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             EV    +      +IV +D +      VV+ +G
Sbjct: 82  --EVKEVISNSEFSKAIVCEDGTRYEAKAVVVASG 114


>gi|301060573|ref|ZP_07201412.1| putative NADH oxidase [delta proteobacterium NaphS2]
 gi|300445357|gb|EFK09283.1| putative NADH oxidase [delta proteobacterium NaphS2]
          Length = 650

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+VIGGG  G EAA  A++ G    LI       G +
Sbjct: 389 VLVIGGGPGGVEAALTASRRGHKVTLIEKNAELGGML 425


>gi|218708160|ref|YP_002415781.1| hypothetical protein VS_0094 [Vibrio splendidus LGP32]
 gi|218321179|emb|CAV17129.1| hypothetical protein VS_0094 [Vibrio splendidus LGP32]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DVIVIG G AG   AA A K G    ++ H
Sbjct: 1  MSEKFDVIVIGAGAAGLMCAAEAGKRGRRVLVVDH 35


>gi|148976573|ref|ZP_01813269.1| hypothetical protein VSWAT3_11426 [Vibrionales bacterium SWAT-3]
 gi|145964149|gb|EDK29406.1| hypothetical protein VSWAT3_11426 [Vibrionales bacterium SWAT-3]
          Length = 354

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DVIVIG G AG   AA A K G    ++ H
Sbjct: 10 MSEKFDVIVIGAGAAGLMCAAEAGKRGRRVLVVDH 44


>gi|86146609|ref|ZP_01064931.1| hypothetical protein MED222_18433 [Vibrio sp. MED222]
 gi|85835666|gb|EAQ53802.1| hypothetical protein MED222_18433 [Vibrio sp. MED222]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DVIVIG G AG   AA A K G    ++ H
Sbjct: 1  MSEKFDVIVIGAGAAGLMCAAEAGKRGRRVLVVDH 35


>gi|84386293|ref|ZP_00989321.1| hypothetical protein V12B01_02250 [Vibrio splendidus 12B01]
 gi|84378717|gb|EAP95572.1| hypothetical protein V12B01_02250 [Vibrio splendidus 12B01]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  +DVIVIG G AG   AA A K G    ++ H
Sbjct: 1  MSEKFDVIVIGAGAAGLMCAAEAGKRGRRVLVVDH 35


>gi|327312715|ref|YP_004328152.1| alkyl hydroperoxide reductase subunit F [Prevotella denticola
           F0289]
 gi|326945221|gb|AEA21106.1| alkyl hydroperoxide reductase, F subunit [Prevotella denticola
           F0289]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+YDV+V+GGG AG  AA  +A+ G   A++ 
Sbjct: 211 RTYDVLVLGGGPAGVSAAIYSARKGLKVAVVA 242


>gi|325860239|ref|ZP_08173364.1| alkyl hydroperoxide reductase, F subunit [Prevotella denticola CRIS
           18C-A]
 gi|325482326|gb|EGC85334.1| alkyl hydroperoxide reductase, F subunit [Prevotella denticola CRIS
           18C-A]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+YDV+V+GGG AG  AA  +A+ G   A++ 
Sbjct: 211 RTYDVLVLGGGPAGVSAAIYSARKGLKVAVVA 242


>gi|325268551|ref|ZP_08135181.1| alkyl hydroperoxide reductase [Prevotella multiformis DSM 16608]
 gi|324989079|gb|EGC21032.1| alkyl hydroperoxide reductase [Prevotella multiformis DSM 16608]
          Length = 517

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+YDV+V+GGG AG  AA  +A+ G   A++ 
Sbjct: 211 RTYDVLVLGGGPAGVSAAIYSARKGLKVAVVA 242


>gi|81428133|ref|YP_395132.1| thioredoxin reductase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609774|emb|CAI54820.1| Thioredoxin reductase [Lactobacillus sakei subsp. sakei 23K]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +SYDVIVIG G  G  AA  A++   S  ++
Sbjct: 1  MAKSYDVIVIGAGPGGMTAALYASRSNLSVLML 33


>gi|168240858|ref|ZP_02665790.1| probable electron transfer flavoprotein-quinone oxidoreductase YgcN
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194447463|ref|YP_002045358.1| hypothetical protein SeHA_C1482 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200389593|ref|ZP_03216204.1| probable electron transfer flavoprotein-quinone oxidoreductase YgcN
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194405767|gb|ACF65986.1| probable electron transfer flavoprotein-quinone oxidoreductase YgcN
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|199602038|gb|EDZ00584.1| probable electron transfer flavoprotein-quinone oxidoreductase YgcN
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339308|gb|EDZ26072.1| probable electron transfer flavoprotein-quinone oxidoreductase YgcN
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 64/217 (29%), Gaps = 32/217 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1   MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61  EID---ALDGLMGRVADAAGIQFR------VLNVKKGPAVR------GPRTQADRELYRL 105
            I    A    + RV     I F        L+  + P           R + D  L   
Sbjct: 57  SIMPGFATSAPIERVVTREKISFLTEESAVTLDFHRAPPTPPLTSYTVLRNKLDPWLMAQ 116

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRG 160
           A Q        +      V     E N ++ +     ++  N +I    V    G  L  
Sbjct: 117 AEQAGAQFIPGVR-----VDALVREGNRVTGVQAGDDILDANIVILADGVNSMLGRSLDM 171

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK 197
           V          G         L  + ++  F+    +
Sbjct: 172 VPVSSAHHYAVG---VKELIGLSPALIEERFNLAPHE 205


>gi|163734075|ref|ZP_02141516.1| sarcosine oxidase, alpha subunit [Roseobacter litoralis Och 149]
 gi|161392611|gb|EDQ16939.1| sarcosine oxidase, alpha subunit [Roseobacter litoralis Och 149]
          Length = 1000

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           DV+++G G +G  AA  A + G+   L+   T   G++   PA+   G+ 
Sbjct: 171 DVLIVGAGPSGIAAALTAGRAGSKVVLVDENTEMGGTLLSEPAVSIEGQS 220


>gi|328465860|gb|EGF37046.1| thioredoxin reductase [Lactobacillus rhamnosus MTCC 5462]
          Length = 59

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G  G  AA  A++   S  ++
Sbjct: 1  MAKKYDVIVIGAGPGGMTAALYASRANLSVLML 33


>gi|261416508|ref|YP_003250191.1| geranylgeranyl reductase [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|261372964|gb|ACX75709.1| geranylgeranyl reductase [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|302326495|gb|ADL25696.1| geranylgeranyl reductase family protein [Fibrobacter succinogenes
          subsp. succinogenes S85]
          Length = 395

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          N  YDV+VIG G  G  AA   ++ G    L+  K   IG 
Sbjct: 4  NNEYDVVVIGAGPGGSVAARNLSRAGHKVLLLE-KREKIGY 43


>gi|199597256|ref|ZP_03210687.1| Thioredoxin reductase [Lactobacillus rhamnosus HN001]
 gi|229551760|ref|ZP_04440485.1| thioredoxin-disulfide reductase [Lactobacillus rhamnosus LMS2-1]
 gi|258507915|ref|YP_003170666.1| thioredoxin reductase [Lactobacillus rhamnosus GG]
 gi|258539159|ref|YP_003173658.1| thioredoxin reductase [Lactobacillus rhamnosus Lc 705]
 gi|199591772|gb|EDY99847.1| Thioredoxin reductase [Lactobacillus rhamnosus HN001]
 gi|229314891|gb|EEN80864.1| thioredoxin-disulfide reductase [Lactobacillus rhamnosus LMS2-1]
 gi|257147842|emb|CAR86815.1| Thioredoxin reductase [Lactobacillus rhamnosus GG]
 gi|257150835|emb|CAR89807.1| Thioredoxin reductase [Lactobacillus rhamnosus Lc 705]
 gi|259649242|dbj|BAI41404.1| thioredoxin reductase [Lactobacillus rhamnosus GG]
          Length = 315

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G  G  AA  A++   S  ++
Sbjct: 1  MAKKYDVIVIGAGPGGMTAALYASRANLSVLML 33


>gi|154506644|ref|ZP_02043101.1| hypothetical protein RUMGNA_03911 [Ruminococcus gnavus ATCC 29149]
 gi|153793336|gb|EDN75759.1| hypothetical protein RUMGNA_03911 [Ruminococcus gnavus ATCC 29149]
          Length = 648

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 19/27 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +V+VIGGG AG EAA VAAK G    L
Sbjct: 382 NVLVIGGGPAGMEAAYVAAKRGHHVVL 408


>gi|319956715|ref|YP_004167978.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
          [Nitratifractor salsuginis DSM 16511]
 gi|319419119|gb|ADV46229.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Nitratifractor salsuginis DSM 16511]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD++VIG G  G  AA +AA+ G    LI
Sbjct: 2  KQYDLVVIGAGPGGTPAAMMAARFGKKVLLI 32


>gi|322433865|ref|YP_004216077.1| HI0933 family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161592|gb|ADW67297.1| HI0933 family protein [Acidobacterium sp. MP5ACTX9]
          Length = 398

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 121/428 (28%), Gaps = 73/428 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R +DV+V+G G AG   AA A + G    ++ H    +G       I G G+ +      
Sbjct: 2   RDFDVVVLGAGAAGLMCAAEAGRRGRRVLVVDH-ADKVG---KKILISGGGRCNFTNLGC 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE--LYRLAMQREIL----SQENL 117
             +  +                    A+       +R    Y      ++     S+E +
Sbjct: 58  RAENFISENPHFVRSALARFTAADFVAM------VERHGIKYHEKTLGQLFCDASSREIV 111

Query: 118 DVIQGEVAGFNTEKNIISS-------------IVMQDNSMIRCSTVVLTTG--------- 155
            +++ E           +S             +     +++  + VV T G         
Sbjct: 112 AMLEKECGEARVTIWTSTSVAKLGRREDGRFLVETSQGAVLAEAVVVGTGGLSIPQMGAT 171

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--DK 213
           +F   V     L++   R G  P         ++   +G          D K   +    
Sbjct: 172 SFGYEVAREFGLRVTTCRPGLVPFTLRPEDRERWCDLSGVSAMAEAKATDKKAPGFREKI 231

Query: 214 TEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS-AIYSGDIKSYGP 272
                     +     +       +E  +         ++ +N +   A     +K+  P
Sbjct: 232 LVTHKGLSGPVVLQISSYWKEGEAVELDLAMGEKVFGGLLQKNARRDVAAVFAAVKTVLP 291

Query: 273 RYCPSIEDKIV--RFGERNGHQIFLEP--EGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
                    +     G+        E                   LP   +        G
Sbjct: 292 GRWAERWVAVNAPELGDGRRDFTNAEIAEMERTMHEWRV------LPAGTE--------G 337

Query: 329 LEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQ 381
             K  +   G       ++  EL   T+E KK+ GL+  G++   TG+        A A 
Sbjct: 338 YAKAEVTTGG-------VDTAELDAKTMEAKKVPGLYFVGEVVDVTGWLGGYNFQWAWAS 390

Query: 382 GLVAGINS 389
           G  AG  +
Sbjct: 391 GFCAGQVA 398


>gi|111225497|ref|YP_716291.1| soluble pyridine nucleotide transhydrogenase [Frankia alni ACN14a]
 gi|111153029|emb|CAJ64776.1| soluble pyridine nucleotide transhydrogenase [Frankia alni ACN14a]
          Length = 513

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+VIG G  G +AA  AAKLG   A++  K   IG +S N    G      +RE   
Sbjct: 47  DYDVLVIGSGPGGQKAAIAAAKLGRRVAIVD-KREMIGGVSINT---GTIPSKTLREAVL 102

Query: 65  LDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
               M +  +  G  +RV  ++  G      R    RE   + + R  LS+ ++ ++ G 
Sbjct: 103 YLTGMSQ-RELYGSSYRVKDDITVGDLSARTRHVISRE---IDVIRNQLSRNHVTLLTGL 158

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +  +     + +    ++  ++   +++ TGT
Sbjct: 159 ASFIDPHTVSVRAAGDIEDRRVQAERIIIATGT 191


>gi|38638557|ref|NP_943143.1| NADH oxidase [Pseudomonas sp. ND6]
 gi|34335345|gb|AAP44243.1| NADH oxidase [Pseudomonas sp. ND6]
          Length = 466

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AGCEAA +AA+ G    L+
Sbjct: 234 VLVVGAGPAGCEAAILAAQRGHQVVLL 260


>gi|313901819|ref|ZP_07835241.1| Electron-transferring-flavoprotein dehydrogenase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467901|gb|EFR63393.1| Electron-transferring-flavoprotein dehydrogenase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 432

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV+++G G AG  A  V A+ GA   +                +GG+   H + E
Sbjct: 1   MAERFDVVIVGAGPAGLSAGLVLARGGARVLI----LERGEYPGSKNVMGGVLYRHQLDE 56

Query: 62  IDALDGLMGRVADAAGI-QFRVLNVKKGPAV---RGPRTQAD--------RELYRLAMQR 109
           +           +   + Q   L           R PR   D        R  +     +
Sbjct: 57  LLP-GAWREAPVERTIVEQNYWLLTPDSAVTFGYRTPRWADDPPNNFTVLRAKFDPWFAK 115

Query: 110 EILSQENLDVIQGEVAGFNTEKN-IISSIVMQD-NSMIRCSTVVLTTG 155
           ++       + +  V     +    +  +V       +    V+L  G
Sbjct: 116 KVEEAGATLITRTNVVDLIHDDRGRVVGVVAGRPEGEVYADVVILAEG 163


>gi|307596220|ref|YP_003902537.1| thioredoxin reductase [Vulcanisaeta distributa DSM 14429]
 gi|307551421|gb|ADN51486.1| thioredoxin reductase [Vulcanisaeta distributa DSM 14429]
          Length = 335

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++ YD ++IGGG AG  AA  AA+ G ST +IT
Sbjct: 20 LTSKVYDTVIIGGGPAGMSAAIYAARYGLSTIIIT 54


>gi|89095247|ref|ZP_01168169.1| dihydrolipoamide dehydrogenase [Oceanospirillum sp. MED92]
 gi|89080501|gb|EAR59751.1| dihydrolipoamide dehydrogenase [Oceanospirillum sp. MED92]
          Length = 480

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVIVIG G  G  AA  AA+LG  TA +       G          +G       
Sbjct: 1   MSDKFDVIVIGAGPGGYVAAIRAAQLGLKTACVEKWVDEKGGAVLGGTCLNVGCIPSKAL 60

Query: 62  IDALDGLM-GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE-ILSQENLDV 119
           +++       + AD  GIQ          A+     + D+ +  L M    +     + +
Sbjct: 61  LESTHQFHNAQHADVHGIQVSGDVTMDVKAM---VARKDKIVGNLTMGVAGLFKANGVTL 117

Query: 120 IQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           +QG   G       +  +   D S        V+L +G+
Sbjct: 118 LQGM--GKLHGGKKVE-VTAADGSSATYEAENVILASGS 153


>gi|266623026|ref|ZP_06115961.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           hathewayi DSM 13479]
 gi|288865215|gb|EFC97513.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           hathewayi DSM 13479]
          Length = 406

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 152/430 (35%), Gaps = 75/430 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---D 63
           +V++IGGG +G  AA  AA+ GA   ++ H               G GK +L       D
Sbjct: 4   NVMIIGGGASGMTAAIAAAREGARVVILEHTK----RPGKKILSTGNGKCNLTNLDMRKD 59

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-----------AMQREIL 112
           A  G     A        V          G     DR  Y             A++ E+ 
Sbjct: 60  AFRGEHPGFAWKVIEAVPVKETVSFFEDLGLVL-TDRNGYVYPATGQASSVLDALRFELE 118

Query: 113 SQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLT-TGTFLRGVIHIGKLKI 169
             +   + + EV+G +   E      ++  D  ++   +     TG+   G     KL  
Sbjct: 119 RLKIPVLCECEVSGISKKLELRTTQGVMKADAVILAAGSKAAPGTGSDGSG----YKLAG 174

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--------DKTEKQFADE 221
             G     P  +L    ++        K     R D    ++        D+ E QF D 
Sbjct: 175 SLGHRVIEPLPAL----VQLKCRETWYKQFAGVRTDAFVTLFCDGHKTASDRGELQFTDY 230

Query: 222 RL--IPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
            +  IP  F   +  +R +  G   T       +M+  +     +  ++  G R      
Sbjct: 231 GISGIP-VFQVSRFASRALNEGKKVTVRLDLMPVMDKQELFHFLTERVRRLGYRPGEEFL 289

Query: 280 DKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR-TIPGLE-------- 330
           + ++    +  HQ+ L+  G+      P G  T+   E Q + +   I  LE        
Sbjct: 290 NGVL---NKKLHQVLLKKSGI------PAGRRTSEITEKQLRVLTDRIKALETTVTGVNS 340

Query: 331 --KVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQ 381
             +  I   G       ++ +E+ P T+E+K +S LFLAG+I    G         A + 
Sbjct: 341 FDQAQICCGG-------VDTREINPCTMESKLVSQLFLAGEILDVDGICGGYNLQWAWSS 393

Query: 382 GLVAGINSAR 391
           G++AG N+ R
Sbjct: 394 GILAGRNAGR 403


>gi|256827315|ref|YP_003151274.1| thioredoxin-disulfide reductase [Cryptobacterium curtum DSM
          15641]
 gi|256583458|gb|ACU94592.1| thioredoxin-disulfide reductase [Cryptobacterium curtum DSM
          15641]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++D+ VIG G AG  AA  +A+ G S  + 
Sbjct: 2  ETFDIAVIGAGPAGMTAALYSARAGLSVVMF 32


>gi|328887060|emb|CCA60299.1| putative reductase [Streptomyces venezuelae ATCC 10712]
          Length = 924

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA+  L+
Sbjct: 28 DVLVIGGGTAGTMAALTAAERGANVLLL 55


>gi|256821366|ref|YP_003145329.1| alkyl hydroperoxide reductase subunit F [Kangiella koreensis DSM
           16069]
 gi|256794905|gb|ACV25561.1| alkyl hydroperoxide reductase, F subunit [Kangiella koreensis DSM
           16069]
          Length = 536

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 88/265 (33%), Gaps = 56/265 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  +A  +A+ G    LI      IG                        
Sbjct: 217 DVVVIGGGPAGVGSAIYSARKGLKVTLIA---DRIG------------------------ 249

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
              G+V D  GI+  +   K          QA    Y + ++  +               
Sbjct: 250 ---GQVKDTMGIENLISVPKTTGPELSGALQAHLNDYDVTVKEHLRVT------------ 294

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSNS 181
            N E+  I SI +    +I   T+++ TG   R     G        +      D P   
Sbjct: 295 -NIEQGDIKSITLSSGEVIDSKTLIIATGAKWRELGIPGEKENIGNGVAYCPHCDGPFFK 353

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +  +    ++G       A +     +++   +  AD+ L+  +   D IT  +    
Sbjct: 354 GKDVAVIGGGNSGIEAALDLAGIVKSVTVFEFMPELKADKVLVDQAEARDNITILR---- 409

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD 266
               N+ T  I  +N K SAI   D
Sbjct: 410 ----NVATKEIHADNGKVSAIEYQD 430


>gi|87200952|ref|YP_498209.1| BFD-like (2Fe-2S)-binding protein [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87136633|gb|ABD27375.1| BFD-like (2Fe-2S)-binding protein [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 459

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGAS 30
          DVIVIG G AG  AA   A+ G  
Sbjct: 4  DVIVIGAGPAGVRAAEALARAGIR 27


>gi|324990349|gb|EGC22287.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK353]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D             C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDGLFTVRSSDQAWTCQKLIVTTG 163


>gi|323353495|ref|ZP_08088028.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis VMC66]
 gi|322121441|gb|EFX93204.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis VMC66]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 22/168 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++     T LI         +    A  G G+ ++    D
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYAQKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGD 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + +    DR        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHDRVFPATDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
            L+    E+ G       I S+   D             C  +++TTG
Sbjct: 116 ALEKKIAELGGTVITNTEIVSVKKSDSLFSVRSSGQTWTCQKLIVTTG 163


>gi|149374527|ref|ZP_01892301.1| predicted flavoprotein [Marinobacter algicola DG893]
 gi|149361230|gb|EDM49680.1| predicted flavoprotein [Marinobacter algicola DG893]
          Length = 394

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          MI ++YDVI+IG G AG   AA A   G    +I H
Sbjct: 1  MIPQNYDVIIIGAGAAGLMCAATAGYRGRRVLVIDH 36


>gi|225376088|ref|ZP_03753309.1| hypothetical protein ROSEINA2194_01725 [Roseburia inulinivorans DSM
           16841]
 gi|225212108|gb|EEG94462.1| hypothetical protein ROSEINA2194_01725 [Roseburia inulinivorans DSM
           16841]
          Length = 666

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +N+  +V+VIGGG AG EAA  AA++G +T LI  K  
Sbjct: 380 VNKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKKAE 417


>gi|150018348|ref|YP_001310602.1| hypothetical protein Cbei_3523 [Clostridium beijerinckii NCIMB
          8052]
 gi|149904813|gb|ABR35646.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 449

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++YDV++ GGG +G  AA  A++ GA T +I   
Sbjct: 2  KNYDVVIAGGGFSGSIAAIAASREGAKTLVIESN 35


>gi|116494455|ref|YP_806189.1| thioredoxin reductase [Lactobacillus casei ATCC 334]
 gi|227535581|ref|ZP_03965630.1| thioredoxin-disulfide reductase [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|239631204|ref|ZP_04674235.1| thioredoxin reductase [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|301065965|ref|YP_003787988.1| thioredoxin reductase [Lactobacillus casei str. Zhang]
 gi|116104605|gb|ABJ69747.1| Thioredoxin reductase [Lactobacillus casei ATCC 334]
 gi|227186711|gb|EEI66778.1| thioredoxin-disulfide reductase [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|239525669|gb|EEQ64670.1| thioredoxin reductase [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|300438372|gb|ADK18138.1| Thioredoxin reductase [Lactobacillus casei str. Zhang]
          Length = 315

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G  G  AA  A++   S  ++
Sbjct: 1  MAKKYDVIVIGAGPGGMTAALYASRANLSVLML 33


>gi|309787302|ref|ZP_07681914.1| fixC domain protein [Shigella dysenteriae 1617]
 gi|308924880|gb|EFP70375.1| fixC domain protein [Shigella dysenteriae 1617]
          Length = 67

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          M    +D I++G G AG  AA V A+ GA   +         S       GG+ 
Sbjct: 1  MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLV----IERGNSAGAKNVTGGVS 50


>gi|224367604|ref|YP_002601767.1| SoxB1 [Desulfobacterium autotrophicum HRM2]
 gi|223690320|gb|ACN13603.1| SoxB1 [Desulfobacterium autotrophicum HRM2]
          Length = 385

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          + ++YD IV+G G AG   A    + G  T +I    S  G      AIGG+   H 
Sbjct: 1  MTKAYDAIVVGAGSAGVPTALALGQKGVKTLVIDSHPSP-GQGQNKHAIGGIRATHS 56


>gi|114764889|ref|ZP_01444071.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Pelagibaca bermudensis HTCC2601]
 gi|114542775|gb|EAU45798.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseovarius sp. HTCC2601]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H + 
Sbjct: 3  QYDVIVIGAGPGGYVAAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGRV 72
          E +   A  GL G+ 
Sbjct: 62 EAEENFAKMGLKGKA 76


>gi|204927647|ref|ZP_03218848.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
 gi|204322989|gb|EDZ08185.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Javiana str. GA_MM04042433]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGQLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|326386846|ref|ZP_08208461.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208649|gb|EGD59451.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 456

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 15/156 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++GGG +G   A   A+LG  + L         +++   A G     HL   ++    
Sbjct: 16  VLIVGGGFSGTLLAINLARLGVPSVLFERDQ---TALAKGLAFGTRHPEHL---LNVRAS 69

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-----QENLDVIQG 122
            M    D      R L   +  A +  R    R  Y   ++  +L         L +   
Sbjct: 70  NMSAFPDDPQHFLRWLGFSR--AEQANRF-VPRLSYGQYLREILLESLGRTTARLAIRSD 126

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
            V     + + + ++ + + + +     VL  G F 
Sbjct: 127 NVVDLREDGDGVIAV-LANGATVPGRAAVLALGHFA 161


>gi|91790231|ref|YP_551183.1| BFD-like protein [Polaromonas sp. JS666]
 gi|91699456|gb|ABE46285.1| BFD-like (2Fe-2S)-binding region [Polaromonas sp. JS666]
          Length = 473

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          M   ++D+++IG G AG  AA  AA LG  T L+  +    G +  N
Sbjct: 1  MSASTHDLVIIGAGPAGMSAALTAASLGMKTLLLDEQLRPGGQIYRN 47


>gi|304322019|ref|YP_003855662.1| mercuric reductase [Parvularcula bermudensis HTCC2503]
 gi|303300921|gb|ADM10520.1| mercuric reductase [Parvularcula bermudensis HTCC2503]
          Length = 483

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVR 60
           + SYD+IVIG G AG  A+  AA+ G   A++ H T   T  ++ C P+   +  G  V 
Sbjct: 18  DDSYDLIVIGAGSAGFSASISAAEAGRRVAMVGHGTIGGTCVNVGCVPSKAMIRAGEAVH 77

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
              A     G   +          V KG A          E+ +      + S E +  I
Sbjct: 78  AGTAAARFPG--IEPCAHSVDWSAVVKGTADLVD------EMRQKKYIDLLPSYEYVTYI 129

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +   A        +         +I    V++ TG+
Sbjct: 130 EEGAARLVEGGIEVGG------RIIAAPKVLIATGS 159


>gi|296532587|ref|ZP_06895292.1| dihydrolipoyl dehydrogenase [Roseomonas cervicalis ATCC 49957]
 gi|296267078|gb|EFH12998.1| dihydrolipoyl dehydrogenase [Roseomonas cervicalis ATCC 49957]
          Length = 492

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
           ++ S+DVIVIG G  G   A  AA+LG   A +  K  T+G    ++ C P+   L    
Sbjct: 30  MSDSFDVIVIGAGPGGYVCAIRAAQLGMKVACVE-KRDTLGGTCLNIGCIPSKALLQSSE 88

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG 93
              E        G + D   +    +  +KG  V  
Sbjct: 89  AFEETKHKFADHGILVDGVKLDLARMQARKGEVVSA 124


>gi|152982988|ref|YP_001354501.1| glucose-methanol-choline oxidoreductase [Janthinobacterium sp.
           Marseille]
 gi|151283065|gb|ABR91475.1| glucose-methanol-choline oxidoreductase [Janthinobacterium sp.
           Marseille]
          Length = 506

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 104 RLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
              +  E+ S+ NL ++ + EV     +    + + + +        V+L+ G F    I
Sbjct: 207 MAYLTDEVRSRPNLTIMGEAEVDVILFDGRRATGVRLINGDSFMAGQVILSAGAFGSPAI 266

Query: 163 HIGKLKIPAGRMGDSPSNSL-----FNSFMKFDFDTGRL 196
            +     PA  + +     L      +   +  F     
Sbjct: 267 LMRSGIGPATHLEELGIPVLQAAPVGDRLKEHPFYYNVY 305


>gi|121713320|ref|XP_001274271.1| squalene  monooxygenase Erg1 [Aspergillus clavatus NRRL 1]
 gi|119402424|gb|EAW12845.1| squalene monooxygenase Erg1 [Aspergillus clavatus NRRL 1]
          Length = 479

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 19/175 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STI-------GSMSCNPAIGGLGKG 56
           DV++IGGG  GC  A    + G S  ++         I       G +     +G     
Sbjct: 28  DVVIIGGGILGCALAVALGRQGRSVIMLEASLKEPDRIVGELLQPGGVQALEQLGLQECL 87

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +  I A    +    D   IQ+   +    PA  G      R  + + ++  +L+  N
Sbjct: 88  EGIDAIPAQGYYVSYFGDVVSIQYPKPSPT-APAPEGRCFHHGR--FVMKLREAVLACPN 144

Query: 117 LDVIQGEVAGFNTEKNI--ISSIVMQ----DNSMIRCSTVVLTTGTFLRGVIHIG 165
           + V++ +     T  +   +  +  +      +       V+  G   +      
Sbjct: 145 VSVVETKATDLVTCSHTQQVLGVECEAKDGTKACYFAHLTVVADGYASKFRKQHH 199


>gi|325968041|ref|YP_004244233.1| thioredoxin reductase [Vulcanisaeta moutnovskia 768-28]
 gi|323707244|gb|ADY00731.1| thioredoxin reductase [Vulcanisaeta moutnovskia 768-28]
          Length = 335

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +  + YD I+IGGG AG  AA  AA+ G ST +IT
Sbjct: 20 LTGKVYDTIIIGGGPAGLSAAIYAARYGMSTIIIT 54


>gi|291550951|emb|CBL27213.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Ruminococcus
           torques L2-14]
          Length = 668

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           V V+G G AG EAA VAAK G    +   K+  IG      A+    K  ++R I+  
Sbjct: 414 VAVVGAGIAGLEAARVAAKRGHEVTVFE-KSDKIGGQIHLAAVPPR-KSEILRSIEYY 469


>gi|191637840|ref|YP_001987006.1| Thioredoxin reductase [Lactobacillus casei BL23]
 gi|190712142|emb|CAQ66148.1| Thioredoxin reductase [Lactobacillus casei BL23]
 gi|327381906|gb|AEA53382.1| Thioredoxin reductase [Lactobacillus casei LC2W]
 gi|327385067|gb|AEA56541.1| Thioredoxin reductase [Lactobacillus casei BD-II]
 gi|330367375|dbj|BAK19468.1| thioredoxin reductase [Lactobacillus casei]
          Length = 317

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIG G  G  AA  A++   S  ++
Sbjct: 1  MAKKYDVIVIGAGPGGMTAALYASRANLSVLML 33


>gi|163858754|ref|YP_001633052.1| putative oxidoreductase protein [Bordetella petrii DSM 12804]
 gi|163262482|emb|CAP44785.1| putative oxidoreductase protein [Bordetella petrii]
          Length = 417

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 16/212 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLGKGH 57
            +  V+VIG G AG  AA +  + G    ++                 C   I   G   
Sbjct: 2   ENRQVVVIGAGPAGSMAATLLKRRGHDVLILERQRFPRFSIGESLLAHCLEFIEEAG--- 58

Query: 58  LVREIDALDGLMGR-VADAAGIQFRVLN-VKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           ++  + A    M    A A G  +   +   K     G   Q  R  +   +  E   Q 
Sbjct: 59  MMDAVRAAGFQMKNGAAFACGDAYTDFDFRDKFSPGPGTTFQVQRAQFDQVLADEAARQ- 117

Query: 116 NLDVI-QGEVAGFN-TEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPA 171
            +++  + EV   +    + +  +   D S  R  C  V+  +G            +  A
Sbjct: 118 GVEIRYEQEVTCADFDGDHPVLDVRRADGSAYRVNCRFVLDASGYGRVLARLCNLEQPSA 177

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
                +    + +      FD  ++      R
Sbjct: 178 APPRKAIFTHIEDHLDSGQFDRNKILISVHPR 209


>gi|87199763|ref|YP_497020.1| succinate dehydrogenase flavoprotein subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135444|gb|ABD26186.1| succinate dehydrogenase subunit A [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 604

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 78/221 (35%), Gaps = 52/221 (23%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD +V+G G +G  A   +A+ G  TA IT     ++ T+ +      ++G    
Sbjct: 10  IIDHTYDTVVVGAGGSGLRATMGSAQAGLRTACITKVFPTRSHTVAAQGGIAASLGNNSP 69

Query: 56  GHLVREI-DALDG-----------LMGRVADAAGIQFR---------------------- 81
            H    + D + G            M R A AA  +                        
Sbjct: 70  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVYELEHAGVPFSRNPEGTIYQRPFGGH 129

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-----DVIQGEVAGFNTEKNIISS 136
           + N+ +GP V+     ADR  +  AM   +  Q++L       I+        E      
Sbjct: 130 MQNMGEGPPVQRTCAAADRTGH--AMLHAL-YQQSLKYDADFFIEYFAIDLIMENGECRG 186

Query: 137 IV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           ++   M D S+   R   VVL TG + R            G
Sbjct: 187 VIALCMDDGSIHRFRSHAVVLATGGYGRSYFTATSAHTCTG 227


>gi|262281865|ref|ZP_06059634.1| L-amino acid oxidase [Streptococcus sp. 2_1_36FAA]
 gi|262262319|gb|EEY81016.1| L-amino acid oxidase [Streptococcus sp. 2_1_36FAA]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 124/416 (29%), Gaps = 64/416 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    D
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGD 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGVIHIGKL 167
            L+    E+ G       I S+   D        +    C  +++TTG            
Sbjct: 116 ALEKKIAELGGTVITNTEIVSVKKTDDLFTVRSSDQTWTCQKLIVTTGGKSYPSTGSTGF 175

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                R        L  +           K      LD  T+ + K      D     F 
Sbjct: 176 GHDIARHFKHTVTDL-EAAESPLLTDFPHKALQGISLDDVTLSYGKHVITH-DLLFTHFG 233

Query: 228 FMTDKITNRQIECGITRT----------NLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                            T            +    + EN + S      +          
Sbjct: 234 LSGPAALRLSSFVKGGETIYLDVLPQMSQQDLTDFLEENREKSLKNCLKVLL-----PER 288

Query: 278 IEDKIVR-FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIR 336
           + D   + F E+       E E L   +         LP  +  +       L K  + +
Sbjct: 289 MADFFAQPFPEKVKQLNLSEKESLIKQIKE-------LPIPVTGKM-----SLAKSFVTK 336

Query: 337 PGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
            G +++    NPK L    E+K + GL  AG+   IN  TG      A   G VAG
Sbjct: 337 GGVSLKEI--NPKTL----ESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG 386


>gi|182420284|ref|ZP_02951513.1| oxidoreductase, pyridine nucleotide-disulphide family [Clostridium
           butyricum 5521]
 gi|237666394|ref|ZP_04526379.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375879|gb|EDT73471.1| oxidoreductase, pyridine nucleotide-disulphide family [Clostridium
           butyricum 5521]
 gi|237657593|gb|EEP55148.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 319

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 38/153 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD+I+IG G AG  AA  AA+ G                         GK  ++ +  +
Sbjct: 3   SYDLIIIGAGIAGMTAALGAARQGI------------------------GKILVIEKESS 38

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
           + G++ +       +  +     GP             Y   ++ EI   EN+++I    
Sbjct: 39  VGGIINQCIHNGFGKKLIGEYVTGP------------EYIQYIKDEIQK-ENIEIILNSN 85

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           V   N ++ +      +    +    +V   G 
Sbjct: 86  VLDINRDRVVTYVSPSEGVKEVNAKAIVFAMGA 118


>gi|116253594|ref|YP_769432.1| protein involved in invasion [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258242|emb|CAK09343.1| putative protein involved in invasion [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 443

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 32/193 (16%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----------SCNPAIGGLGKGHL 58
           +VIGGG +G  AA  AA+LG    L+       G +           C  +    G   L
Sbjct: 2   LVIGGGPSGLSAAVAAARLGVRVRLV----ERYGFLGGNLTAGLVGPCMTSYSLDGSQQL 57

Query: 59  VRE--------IDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           +R         + AL G +      A +A   F V    K    +    +   +   +  
Sbjct: 58  IRGIYEEFVQRMMALGGALHPSTIPAGSAYCGFIVYGHDKVTPFQPEAAKVAAQRMCIEA 117

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM---IRCSTVVLTTGTFLRGVIHI 164
             E+L      V+   V   + +   +  +V         +R   VV  +      V H 
Sbjct: 118 GVELLLH--TMVVDAIVDDRDADNPRVLGVVCAGKGGLRSVRAKVVVDCSAD--GDVAHY 173

Query: 165 GKLKIPAGRMGDS 177
             +    GR  D 
Sbjct: 174 AGVHTRQGRESDG 186


>gi|88798250|ref|ZP_01113836.1| hypothetical protein MED297_13367 [Reinekea sp. MED297]
 gi|88779026|gb|EAR10215.1| hypothetical protein MED297_13367 [Reinekea sp. MED297]
          Length = 395

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  + +DVIVIG G AG      +A+ G  T L+ H
Sbjct: 1  MTVQQWDVIVIGAGAAGLFCGIESARRGRRTLLLDH 36


>gi|330465201|ref|YP_004402944.1| geranylgeranyl reductase [Verrucosispora maris AB-18-032]
 gi|328808172|gb|AEB42344.1| geranylgeranyl reductase [Verrucosispora maris AB-18-032]
          Length = 424

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 16/166 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G  G   A   A+ G    L+  KT       C   +       L+R      
Sbjct: 9   DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLIRMGVDTS 67

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              G + +           ++    ++   P     RT+ D +   L  QR + +  +L 
Sbjct: 68  TEAGWLHNRGLRVIGGGVRLELDWPDLASFPNYGLVRTRLDFDD--LLAQRAVSAGADLR 125

Query: 119 VIQGEVAGFNTEKNIISSIVMQDN-----SMIRCSTVVLTTGTFLR 159
                +         +  +  +       +      VV   G   R
Sbjct: 126 TSVNVIGPVLDGNGRVVGVEAETGPDKAPATFHAPLVVAADGVSGR 171


>gi|167757725|ref|ZP_02429852.1| hypothetical protein CLOSCI_00055 [Clostridium scindens ATCC 35704]
 gi|167664607|gb|EDS08737.1| hypothetical protein CLOSCI_00055 [Clostridium scindens ATCC 35704]
          Length = 651

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V+V+G G AG EAA  AA++G +  L+  K  +IG +S
Sbjct: 370 VVVVGAGTAGLEAACTAAEVGCNVTLLE-KKDSIGGLS 406


>gi|94496912|ref|ZP_01303486.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
 gi|94423588|gb|EAT08615.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
          Length = 466

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
          M    YDV+VIG G  G  AA  AA+LG  TA       T+G    ++ C P+   L   
Sbjct: 1  MAEFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAE-SRETLGGTCLNVGCIPSKAMLHAS 59

Query: 57 HLVREIDALDGLMGRV--------ADAAGIQFRVLNVKKG 88
           L  E  A +G++ ++         D A +Q +  +  KG
Sbjct: 60 ELYDE--AANGMLAKLGVKIDAMSLDLATMQGQRTDAVKG 97


>gi|331091137|ref|ZP_08339979.1| hypothetical protein HMPREF9477_00622 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405359|gb|EGG84895.1| hypothetical protein HMPREF9477_00622 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 412

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 129/426 (30%), Gaps = 59/426 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +S  ++VIGGG +G  AA  AA+ GA   ++ HK   +G        G     +   E
Sbjct: 1   MKKSKKIVVIGGGASGLVAAITAARNGADVIVLEHK-EKVGKKILATGNGRCNFTNEYME 59

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRG--PRTQADRELYRLAMQREILSQENLDV 119
           I    G      DA   +F            G  P+++      +      IL   N+++
Sbjct: 60  ISCFRGEDVERIDAVLKKFGTKETLHFFDELGVFPKSRNGYYYPKSNQAAAILDVLNMEL 119

Query: 120 IQGEVAGFNTEKNIISSI-------VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + +V       + ++ I       V+          V+L  G     V+          
Sbjct: 120 KRQQVE--IVCNSHVTKIEKTKQFKVLSSTGTYMADAVILAAGGKASAVLGSDGSGYSLA 177

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--------DKTEKQFAD---E 221
           +M     + +  + ++   +    K  +  R D K  ++        D  E QF D    
Sbjct: 178 KMFGHTISPVVPALVQLRGNGTFFKQISGVRADAKISLYVDGELLGEDTGEVQFTDYGLS 237

Query: 222 RLIPFSFM-----------TDKITNRQIECGITRT-NLETHRIIMENIKHSAIYSGDIKS 269
            +  F              T K+              L   + I +N +  A        
Sbjct: 238 GIPVFQISRFAALALYQKKTPKVRVDFFPEFTGEELTLFFEKRIRQNGEKKAGEFLVGLL 297

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGL 329
                   +    VR             E L        G    + E             
Sbjct: 298 NKKLVPILLRASGVRERTLISEVEKERLERLIDKCK---GFEIEITET---------NSF 345

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGL 383
           E+  +      +  + I+      T+E+    GL+LAG+I    G         A A G 
Sbjct: 346 EQAQVC--AGGVRLNEID----IETMESLYEKGLYLAGEILDADGICGGYNLQWAWATGY 399

Query: 384 VAGINS 389
           +AG N+
Sbjct: 400 LAGKNA 405


>gi|296416482|ref|XP_002837908.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633794|emb|CAZ82099.1| unnamed protein product [Tuber melanosporum]
          Length = 402

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 24/172 (13%)

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
            D E     +  E+ S+EN+  +  EV+G       +  + + D   +     +L  G +
Sbjct: 144 VDAETAMRMLHSEVESRENVRFLIAEVSGLLYSGRRVLGVKLLDGKEVTAGLTILAAGAW 203

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII------- 210
             G++ +    +P+G++    + S   +            T     +   +         
Sbjct: 204 TPGLVPLHGRAVPSGQVIAYLTLSREEAIRYASLPVLLNLTTGTLIIHSPSTSPPTLKFA 263

Query: 211 ------------WDKTEKQFA-----DERLIPFSFMTDKITNRQIECGITRT 245
                       + K   Q       D         +++   +   C  T T
Sbjct: 264 RHAQGYASPTPVFPKAIPQEGEGALRDAVKQLVPEFSERPFEKTRVCWYTDT 315


>gi|241992732|gb|ACS73883.1| KstD [Rhodococcus ruber]
          Length = 570

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI + YD++V+G G  G  AA  AA  GAS  L+
Sbjct: 1  MIKQEYDIVVVGSGAGGMTAALTAAHRGASVVLV 34


>gi|169835679|ref|ZP_02868867.1| hypothetical protein cdivTM_00914 [candidate division TM7
           single-cell isolate TM7a]
          Length = 41

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           ++++QG V     E   +  +            VVL TGTF
Sbjct: 1   MELVQGIVVDLIVEDKKVMGVEDNLGIRYGAKAVVLCTGTF 41


>gi|126696821|ref|YP_001091707.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
           9301]
 gi|126543864|gb|ABO18106.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 479

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +D+IVIG G+ G +AA  AA  G   A++   +   G+     C P+   L     VRE
Sbjct: 7   DFDLIVIGAGYGGFDAAKHAAGKGLKVAIVE-SSDMGGTCVNKGCVPSKALLAASGKVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL--D 118
           I            A         +   P       + +R          +L+ +ENL   
Sbjct: 66  I------------ADYEHLAKFGIHASPV------RFERSKIADHANNLVLNVRENLTKT 107

Query: 119 VIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           + +  V         E N    +  ++    +  C  +V+ TG+
Sbjct: 108 LKRSGVEIILGIGRIEGNQKVGVRDKNGIDKIFTCKNIVIATGS 151


>gi|123969029|ref|YP_001009887.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str.
           AS9601]
 gi|123199139|gb|ABM70780.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
           str. AS9601]
          Length = 479

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +D+IVIG G+ G +AA  AA  G   A++   +   G+     C P+   L     VRE
Sbjct: 7   DFDLIVIGAGYGGFDAAKHAAGKGLKVAIVE-SSDMGGTCVNKGCVPSKALLAASGKVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL--D 118
           I            A         +   P       + +R          +L+ +ENL   
Sbjct: 66  I------------ADYEHLAKFGIHASPV------RFERSKIADHANNLVLNVRENLTKT 107

Query: 119 VIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           + +  V         E N    +  ++    +  C  +V+ TG+
Sbjct: 108 LKRSGVEIILGIGRIEGNQKVGVRDKNGIDKIFTCKNIVIATGS 151


>gi|78779778|ref|YP_397890.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
           9312]
 gi|78713277|gb|ABB50454.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
           9312]
          Length = 479

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +D+IVIG G+ G +AA  AA  G   A++   +   G+     C P+   L     VRE
Sbjct: 7   DFDLIVIGAGYGGFDAAKHAAGKGLKVAIVE-SSDMGGTCVNKGCVPSKALLAASGKVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL--D 118
           I            A         +   P       + +R          +L+ +ENL   
Sbjct: 66  I------------ADYEHLAKFGIHASPV------RFERSKIADHANNLVLNVRENLTKT 107

Query: 119 VIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           + +  V         E N    +  ++    +  C  +V+ TG+
Sbjct: 108 LKRSGVEIILGIGRIEGNQKVGVRDKNGIDKIFTCKNIVIATGS 151


>gi|116511757|ref|YP_808973.1| thioredoxin reductase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107411|gb|ABJ72551.1| Thioredoxin reductase [Lactococcus lactis subsp. cremoris SK11]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV++IG G AG  AA   A+    T L+
Sbjct: 1  MTEKKYDVVIIGSGPAGMTAAMYTARSEMKTLLL 34


>gi|298682303|gb|ADI95365.1| NADH oxidase [Pseudomonas putida]
          Length = 604

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AGCEAA +AA+ G    L+
Sbjct: 372 VLVVGAGPAGCEAAILAAQRGHQVVLL 398


>gi|262282199|ref|ZP_06059968.1| thioredoxin-disulfide reductase [Streptococcus sp. 2_1_36FAA]
 gi|262262653|gb|EEY81350.1| thioredoxin-disulfide reductase [Streptococcus sp. 2_1_36FAA]
          Length = 304

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 43/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I+IG G AG  AA  AA+     AL+                          E    
Sbjct: 2   YDTIIIGAGPAGMTAALYAARSNLKVALL--------------------------EAGIP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   AD       V N   G A+      A++      M   + +     V  G V 
Sbjct: 36  GGQMNNTAD-------VENYP-GYALISGPELAEK------MFEPLENLGVEHVF-GHVQ 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               + +    ++ +D  +    TV++ TG F R
Sbjct: 81  RIEDQGD-FKKVITED-EVYESKTVIIATGAFHR 112


>gi|261208636|ref|ZP_05923073.1| thioredoxin reductase [Enterococcus faecium TC 6]
 gi|289566104|ref|ZP_06446540.1| thioredoxin-disulfide reductase [Enterococcus faecium D344SRF]
 gi|260077138|gb|EEW64858.1| thioredoxin reductase [Enterococcus faecium TC 6]
 gi|289162126|gb|EFD09990.1| thioredoxin-disulfide reductase [Enterococcus faecium D344SRF]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G AG  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPAGMTAALYASRSNLSVLMIEQ 32


>gi|147676353|ref|YP_001210568.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
 gi|146272450|dbj|BAF58199.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
          Length = 432

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   +  IV+G G AG  AA + AK G    L         +       GG    H + +
Sbjct: 1  MEEKFAAIVVGAGPAGSTAAYLMAKAGLEVLL----IEKGAAPGSKNMFGGRMYSHALNQ 56

Query: 62 I 62
          +
Sbjct: 57 V 57


>gi|301060541|ref|ZP_07201380.1| FAD dependent oxidoreductase [delta proteobacterium NaphS2]
 gi|300445325|gb|EFK09251.1| FAD dependent oxidoreductase [delta proteobacterium NaphS2]
          Length = 545

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDVI+IG G  G EA A  A+ G+   ++
Sbjct: 1  MENAYDVIIIGAGPNGLEAGAYLARAGSKVLVL 33


>gi|323256712|gb|EGA40441.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008283]
          Length = 247

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|323227549|gb|EGA11708.1| hypothetical protein SEEM0055_13782 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
          Length = 229

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|322616737|gb|EFY13646.1| hypothetical protein SEEM315_14078 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322620003|gb|EFY16876.1| hypothetical protein SEEM971_00725 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322622314|gb|EFY19159.1| hypothetical protein SEEM973_11900 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322627837|gb|EFY24627.1| hypothetical protein SEEM974_02450 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322633064|gb|EFY29807.1| hypothetical protein SEEM201_17076 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322636690|gb|EFY33393.1| hypothetical protein SEEM202_00505 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322641285|gb|EFY37926.1| hypothetical protein SEEM954_01273 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322645274|gb|EFY41803.1| hypothetical protein SEEM054_20421 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650215|gb|EFY46629.1| hypothetical protein SEEM675_18415 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322655789|gb|EFY52091.1| hypothetical protein SEEM965_06921 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660115|gb|EFY56354.1| hypothetical protein SEEM19N_11488 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322665319|gb|EFY61507.1| hypothetical protein SEEM801_02661 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322669576|gb|EFY65724.1| hypothetical protein SEEM507_13526 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673502|gb|EFY69604.1| hypothetical protein SEEM877_21294 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322677429|gb|EFY73493.1| hypothetical protein SEEM867_19504 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322679907|gb|EFY75946.1| hypothetical protein SEEM180_03830 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322687379|gb|EFY83351.1| hypothetical protein SEEM600_04882 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323192496|gb|EFZ77726.1| hypothetical protein SEEM581_18022 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323198649|gb|EFZ83750.1| hypothetical protein SEEM501_01386 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323204076|gb|EFZ89090.1| hypothetical protein SEEM460_07629 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323208695|gb|EFZ93633.1| hypothetical protein SEEM020_15206 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323210908|gb|EFZ95773.1| hypothetical protein SEEM6152_14815 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217672|gb|EGA02387.1| hypothetical protein SEEM0077_04534 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323220093|gb|EGA04560.1| hypothetical protein SEEM0047_21238 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323229474|gb|EGA13597.1| hypothetical protein SEEM0052_11587 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323232697|gb|EGA16793.1| hypothetical protein SEEM3312_01529 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323240265|gb|EGA24309.1| hypothetical protein SEEM5258_21669 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323242747|gb|EGA26768.1| hypothetical protein SEEM1156_18984 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323246560|gb|EGA30536.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2009159199]
 gi|323252798|gb|EGA36635.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008282]
 gi|323260103|gb|EGA43728.1| hypothetical protein SEEM8284_10018 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267132|gb|EGA50617.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008285]
 gi|323271544|gb|EGA54965.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
          Montevideo str. IA_2010008287]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|267993236|gb|ACY88121.1| hypothetical protein STM14_1642 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|210612721|ref|ZP_03289436.1| hypothetical protein CLONEX_01638 [Clostridium nexile DSM 1787]
 gi|210151414|gb|EEA82422.1| hypothetical protein CLONEX_01638 [Clostridium nexile DSM 1787]
          Length = 411

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   VI++GGG +G  AA  AA+ GA   +I H+      +       G GK +L  E
Sbjct: 2  KKRHVIIVGGGASGMVAAISAAREGAKVTIIEHQ----NKLGKKILSTGNGKCNLTNE 55


>gi|205352926|ref|YP_002226727.1| hypothetical protein SG1764 [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205272707|emb|CAR37622.1| putative electron transfer flavoprotein-quinone oxidoreductase
          [Salmonella enterica subsp. enterica serovar Gallinarum
          str. 287/91]
 gi|326627999|gb|EGE34342.1| FAD dependent oxidoreductase [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 427

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|168822214|ref|ZP_02834214.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|205341331|gb|EDZ28095.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|320086167|emb|CBY95941.1| flavoprotein [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|168239530|ref|ZP_02664588.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|194737729|ref|YP_002114369.1| hypothetical protein SeSA_A1448 [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|194713231|gb|ACF92452.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|197287780|gb|EDY27170.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|168233539|ref|ZP_02658597.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|168263824|ref|ZP_02685797.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar Hadar
          str. RI_05P066]
 gi|194472582|ref|ZP_03078566.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|197248549|ref|YP_002146685.1| hypothetical protein SeAg_B1820 [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|198243234|ref|YP_002215774.1| hypothetical protein SeD_A1992 [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|207857141|ref|YP_002243792.1| hypothetical protein SEN1692 [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|194458946|gb|EDX47785.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Kentucky str. CVM29188]
 gi|197212252|gb|ACH49649.1| FAD dependent oxidoreductase [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197937750|gb|ACH75083.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Dublin str. CT_02021853]
 gi|205332353|gb|EDZ19117.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Kentucky str. CDC 191]
 gi|205347526|gb|EDZ34157.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar Hadar
          str. RI_05P066]
 gi|206708944|emb|CAR33274.1| putative electron transfer flavoprotein-quinone oxidoreductase
          [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|326623521|gb|EGE29866.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Dublin str. 3246]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|161898739|ref|YP_001132789.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium gilvum
          PYR-GCK]
 gi|315442551|ref|YP_004075430.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit
          [Mycobacterium sp. Spyr1]
 gi|315260854|gb|ADT97595.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit
          [Mycobacterium sp. Spyr1]
          Length = 570

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 1  MAQQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV 34


>gi|62179941|ref|YP_216358.1| hypothetical protein SC1371 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|167551686|ref|ZP_02345440.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|62127574|gb|AAX65277.1| flavoprotein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|205323524|gb|EDZ11363.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|322714408|gb|EFZ05979.1| hydroxylase [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|16764703|ref|NP_460318.1| hypothetical protein STM1352 [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|167994370|ref|ZP_02575462.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168463244|ref|ZP_02697175.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|194442631|ref|YP_002040609.1| hypothetical protein SNSL254_A1464 [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|197263094|ref|ZP_03163168.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|238910831|ref|ZP_04654668.1| hypothetical protein SentesTe_06807 [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|16419872|gb|AAL20277.1| flavoprotein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|194401294|gb|ACF61516.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Newport str. SL254]
 gi|195634494|gb|EDX52846.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Newport str. SL317]
 gi|197241349|gb|EDY23969.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA23]
 gi|205327749|gb|EDZ14513.1| probable electron transfer flavoprotein-quinone oxidoreductase
          YgcN [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|261246561|emb|CBG24371.1| putative electron transfer flavoprotein-quinone oxidoreductase
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. D23580]
 gi|301157889|emb|CBW17383.1| putative electron transfer flavoprotein-quinone oxidoreductase
          [Salmonella enterica subsp. enterica serovar
          Typhimurium str. SL1344]
 gi|312912338|dbj|BAJ36312.1| hypothetical protein STMDT12_C13690 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321223981|gb|EFX49044.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Salmonella enterica subsp. enterica serovar
          Typhimurium str. TN061786]
 gi|323129624|gb|ADX17054.1| putative electron transfer flavoprotein-quinone oxidoreductase
          ydiS [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|332988240|gb|AEF07223.1| hypothetical protein STMUK_1319 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 428

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V AK G    +         S       GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLV----IERGNSAGSKNMTGGRLYAHSIE 56

Query: 61 EI 62
           I
Sbjct: 57 SI 58


>gi|77359518|ref|YP_339093.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874429|emb|CAI85650.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +DV+VIGGG AG   A   AK+  + ++   + + + +    P+          + 
Sbjct: 1   MPKQFDVVVIGGGLAGASCALSVAKINPALSIAVVEANEVSNDYH-PSFDDRSIALAQQS 59

Query: 62  IDALDGL--------------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           ++ L GL                 V+D        +N ++  A        +   +  ++
Sbjct: 60  VEYLQGLNLFALNSPYATAIKKVSVSDRHHFGKADINCEE-FAKDALGYVVEVNPFGRSL 118

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            + + +Q N+ +   +      ++   + + +Q    I    +V+  G 
Sbjct: 119 HQLLNAQINISLYCPDSVSAIEQQLHNNIVTLQSGEQIAAKLLVIADGA 167


>gi|145214597|gb|ABP44001.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium gilvum PYR-GCK]
          Length = 573

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 4  MAQQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV 37


>gi|330503767|ref|YP_004380636.1| amine oxidase [Pseudomonas mendocina NK-01]
 gi|328918053|gb|AEB58884.1| amine oxidase [Pseudomonas mendocina NK-01]
          Length = 483

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDVI+IGGG AG  AA   A+ G    +I          + N   G      L  E 
Sbjct: 50  DNEYDVIIIGGGFAGVTAARDLAETGQRVLIIE---------ARNRLGGRTFTSSLKDEQ 100

Query: 63  DALDG 67
             L G
Sbjct: 101 VELGG 105


>gi|262375857|ref|ZP_06069089.1| dihydrolipoyl dehydrogenase [Acinetobacter lwoffii SH145]
 gi|262309460|gb|EEY90591.1| dihydrolipoyl dehydrogenase [Acinetobacter lwoffii SH145]
          Length = 476

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +D++VIGGG  G EAA  AA+LG   A I  +          P++GG 
Sbjct: 3  QFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHK-----GKPSLGGT 46


>gi|257898032|ref|ZP_05677685.1| thioredoxin reductase [Enterococcus faecium Com15]
 gi|293378295|ref|ZP_06624464.1| thioredoxin-disulfide reductase [Enterococcus faecium PC4.1]
 gi|257835944|gb|EEV61018.1| thioredoxin reductase [Enterococcus faecium Com15]
 gi|292643159|gb|EFF61300.1| thioredoxin-disulfide reductase [Enterococcus faecium PC4.1]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G AG  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPAGMTAALYASRSNLSVLMIEQ 32


>gi|224373030|ref|YP_002607402.1| methyl-accepting chemotaxis protein [Nautilia profundicola AmH]
 gi|223588990|gb|ACM92726.1| methyl-accepting chemotaxis protein [Nautilia profundicola AmH]
          Length = 454

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           R+   RA + I  R       L     +    GE  ++      +E + L+   K +   
Sbjct: 153 RIHEIRARFEIVYRD------LIIEAQQRKLNGEDEKEVDEWLKKELDKLQEEFKFVAEM 206

Query: 485 SKNLSSTS----ISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           +   +  +       K+  K      F      S + L  I  + +     V E L  + 
Sbjct: 207 NHGYAEVNDEKIEKLKKIAKRTWLRHFDDTLGLSKEELKRISEEEKNQKLPVKEYLLAD- 265

Query: 541 SYAAYTGRQMIEAKEIKFE-EKRLIPKDF-DYSSLPALSN 578
                  R   E +E+K    K  IP++  ++  +  LS 
Sbjct: 266 KKRHVIKRSKKEIEELKRNGFKIKIPENLYNFGEIYNLSI 305


>gi|219853257|ref|YP_002467689.1| geranylgeranyl reductase [Methanosphaerula palustris E1-9c]
 gi|219547516|gb|ACL17966.1| geranylgeranyl reductase [Methanosphaerula palustris E1-9c]
          Length = 401

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVR 60
           N + DV+V+G G AG  AA + AK G    LI             C   +    +  L R
Sbjct: 9   NTTADVVVVGAGPAGVTAAYLLAKDGHQVLLIDKATFPRKKLCAGC---LTEKTRDLLSR 65

Query: 61  EIDALDGLMGR--VADAAGIQFRVLNVKK---GPAVRGPRTQADRELYRLAMQREILSQE 115
                +  M R  +  A    +++   ++         P T  DR  Y   +        
Sbjct: 66  TFGLTETYMIREGIVAATADHYQISCRREMICKRNTSIPFTFVDRTAYDAKLLAAAEEA- 124

Query: 116 NLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            + VI G EV        +I  ++ +D   I    ++   G   R
Sbjct: 125 GVTVITGCEVTSV---DPLIGLVMTRDGRTITGRYLIGADGVNSR 166


>gi|196247945|ref|ZP_03146647.1| FAD dependent oxidoreductase [Geobacillus sp. G11MC16]
 gi|196212729|gb|EDY07486.1| FAD dependent oxidoreductase [Geobacillus sp. G11MC16]
          Length = 431

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 49/171 (28%), Gaps = 26/171 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-------- 53
           +    D IV+G G AG   A   AK G +  L                +GG+        
Sbjct: 1   MPEKCDCIVVGAGPAGTACAYELAKAGVNVLL----LERGEYPGSKNVMGGVLYRKMMED 56

Query: 54  ------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRL 105
                  +  L R I     ++     A    ++ L   + P       R + D      
Sbjct: 57  IIPEFYKEAPLERPIVEQRFMLMDKESAVTFSYKGLEWGREPYNNFTVLRAKFD-----Q 111

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTG 155
               + + Q  L V +        E   +  +     +  +    VVL  G
Sbjct: 112 WFAEKAVEQGALLVCETVALECIVENGRVVGVRTDRPDGEVYADVVVLADG 162


>gi|117621427|ref|YP_854580.1| hypothetical protein AHA_0055 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562834|gb|ABK39782.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 395

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 14/173 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +DV+VIG G AG   AA A   G S  +                I G G+ +    
Sbjct: 1   MMKQFDVVVIGAGAAGLMCAAQAGYRGRSVLV----LDNAKKPGRKILISGGGRCNFTN- 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                      A+    +  +    +    +      DR  + L    + L Q   D   
Sbjct: 56  -HQAGPHAFLSANPHFCKSALARYTQ----QDFIDLVDR--HGLRYHEKTLGQLFCDESA 108

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAG 172
            E+      +   + + +Q  + I     T      T  +G I    L +  G
Sbjct: 109 KEIVDILLTECDWAGVALQFQTEILTVSKTDDGFMLTTSQGEISCHSLVVATG 161


>gi|121604306|ref|YP_981635.1| hypothetical protein Pnap_1400 [Polaromonas naphthalenivorans
          CJ2]
 gi|120593275|gb|ABM36714.1| HI0933 family protein [Polaromonas naphthalenivorans CJ2]
          Length = 415

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
            +DV+VIG G AG   A  A + G    L+ H    +  
Sbjct: 2  HKFDVVVIGAGAAGLFCAGQAGRQGLKVLLVDHS-DKVAE 40


>gi|332364796|gb|EGJ42565.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK1059]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDELFTVRSSDQTWTCQKLIVTTG 163


>gi|327468618|gb|EGF14097.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK330]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDELFTVRSSDQTWTCQKLIVTTG 163


>gi|300812834|ref|ZP_07093229.1| FAD binding domain protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300496170|gb|EFK31297.1| FAD binding domain protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 489

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          ++D++V+G G +G  AA  A++ GA  AL+  K    G        G  G   +      
Sbjct: 2  NFDIVVVGAGASGISAALTASECGAKVALLE-KGDKFGGAG---MFGAQGLFAVESRAQK 57

Query: 65 LDGLMGRVADA 75
            G+   + DA
Sbjct: 58 EAGVKYSIKDA 68


>gi|281491443|ref|YP_003353423.1| thioredoxin-disulfide reductase [Lactococcus lactis subsp. lactis
          KF147]
 gi|281375161|gb|ADA64674.1| Thioredoxin-disulfide reductase [Lactococcus lactis subsp. lactis
          KF147]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV++IG G AG  AA   A+    T L+
Sbjct: 1  MTEKKYDVVIIGSGPAGMTAAMYTARSEMKTLLL 34


>gi|257882768|ref|ZP_05662421.1| thioredoxin reductase [Enterococcus faecium 1,231,502]
 gi|257886853|ref|ZP_05666506.1| thioredoxin reductase [Enterococcus faecium 1,141,733]
 gi|293568668|ref|ZP_06679983.1| thioredoxin-disulfide reductase [Enterococcus faecium E1071]
 gi|293571608|ref|ZP_06682629.1| thioredoxin-disulfide reductase [Enterococcus faecium E980]
 gi|294621538|ref|ZP_06700705.1| thioredoxin-disulfide reductase [Enterococcus faecium U0317]
 gi|257818426|gb|EEV45754.1| thioredoxin reductase [Enterococcus faecium 1,231,502]
 gi|257822907|gb|EEV49839.1| thioredoxin reductase [Enterococcus faecium 1,141,733]
 gi|291588628|gb|EFF20461.1| thioredoxin-disulfide reductase [Enterococcus faecium E1071]
 gi|291598913|gb|EFF29963.1| thioredoxin-disulfide reductase [Enterococcus faecium U0317]
 gi|291608278|gb|EFF37579.1| thioredoxin-disulfide reductase [Enterococcus faecium E980]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G AG  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPAGMTAALYASRSNLSVLMIEQ 32


>gi|257879917|ref|ZP_05659570.1| thioredoxin reductase [Enterococcus faecium 1,230,933]
 gi|257884075|ref|ZP_05663728.1| thioredoxin reductase [Enterococcus faecium 1,231,501]
 gi|257890432|ref|ZP_05670085.1| thioredoxin reductase [Enterococcus faecium 1,231,410]
 gi|257893039|ref|ZP_05672692.1| thioredoxin reductase [Enterococcus faecium 1,231,408]
 gi|260559573|ref|ZP_05831753.1| thioredoxin reductase [Enterococcus faecium C68]
 gi|293556361|ref|ZP_06674942.1| thioredoxin-disulfide reductase [Enterococcus faecium E1039]
 gi|293559415|ref|ZP_06675954.1| thioredoxin-disulfide reductase [Enterococcus faecium E1162]
 gi|294616306|ref|ZP_06696099.1| thioredoxin-disulfide reductase [Enterococcus faecium E1636]
 gi|294617871|ref|ZP_06697481.1| thioredoxin-disulfide reductase [Enterococcus faecium E1679]
 gi|314939555|ref|ZP_07846782.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133a04]
 gi|314942692|ref|ZP_07849518.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133C]
 gi|314948969|ref|ZP_07852335.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0082]
 gi|314953319|ref|ZP_07856246.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133A]
 gi|314993397|ref|ZP_07858762.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133B]
 gi|314995747|ref|ZP_07860836.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133a01]
 gi|257814145|gb|EEV42903.1| thioredoxin reductase [Enterococcus faecium 1,230,933]
 gi|257819913|gb|EEV47061.1| thioredoxin reductase [Enterococcus faecium 1,231,501]
 gi|257826792|gb|EEV53418.1| thioredoxin reductase [Enterococcus faecium 1,231,410]
 gi|257829418|gb|EEV56025.1| thioredoxin reductase [Enterococcus faecium 1,231,408]
 gi|260074241|gb|EEW62563.1| thioredoxin reductase [Enterococcus faecium C68]
 gi|291590820|gb|EFF22536.1| thioredoxin-disulfide reductase [Enterococcus faecium E1636]
 gi|291595889|gb|EFF27172.1| thioredoxin-disulfide reductase [Enterococcus faecium E1679]
 gi|291601428|gb|EFF31699.1| thioredoxin-disulfide reductase [Enterococcus faecium E1039]
 gi|291606629|gb|EFF36024.1| thioredoxin-disulfide reductase [Enterococcus faecium E1162]
 gi|313590019|gb|EFR68864.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133a01]
 gi|313592062|gb|EFR70907.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133B]
 gi|313594595|gb|EFR73440.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133A]
 gi|313598557|gb|EFR77402.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133C]
 gi|313641095|gb|EFS05675.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0133a04]
 gi|313644628|gb|EFS09208.1| thioredoxin-disulfide reductase [Enterococcus faecium TX0082]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G AG  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPAGMTAALYASRSNLSVLMIEQ 32


>gi|227551981|ref|ZP_03982030.1| thioredoxin-disulfide reductase [Enterococcus faecium TX1330]
 gi|257895427|ref|ZP_05675080.1| thioredoxin reductase [Enterococcus faecium Com12]
 gi|227178886|gb|EEI59858.1| thioredoxin-disulfide reductase [Enterococcus faecium TX1330]
 gi|257831992|gb|EEV58413.1| thioredoxin reductase [Enterococcus faecium Com12]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G AG  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPAGMTAALYASRSNLSVLMIEQ 32


>gi|125624390|ref|YP_001032873.1| TrxB1 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493198|emb|CAL98163.1| TrxB1 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071177|gb|ADJ60577.1| thioredoxin reductase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV++IG G AG  AA   A+    T L+
Sbjct: 1  MTEKKYDVVIIGSGPAGMTAAMYTARSEMKTLLL 34


>gi|254282733|ref|ZP_04957701.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR51-B]
 gi|219678936|gb|EED35285.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR51-B]
          Length = 526

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + YDVIVIGGGH G   A   A  G    ++  +   +G
Sbjct: 1  MKQDYDVIVIGGGHNGLTCAGYLAGAGQKVLVLE-RRDKVG 40


>gi|38232984|ref|NP_938751.1| dihydrolipoamide dehydrogenase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199242|emb|CAE48873.1| dihydrolipoamide dehydrogenase [Corynebacterium diphtheriae]
          Length = 469

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +   YDV+V+G G  G  AA  AA+LG   A++  +        +G +     +      
Sbjct: 1   MTEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVVEKQYWGGVCLNVGCIPSKALLKNAEVA 60

Query: 57  HLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           H+        G+ G V+ D      R   V  G           + ++ L  + +I   +
Sbjct: 61  HIFNHEAKTFGISGDVSFDFGAAHKRSRQVSSG---------IVKGVHYLMKKNKITEID 111

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKI 169
            L   +       TE N    +V  D+ +I   +VV +  G  + G I   + +I
Sbjct: 112 GLGSFKDAKTIEITEGNDAGKVVTFDDCIIATGSVVRSLPGVTIGGNIVSFEEQI 166


>gi|161407220|ref|YP_641822.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium sp. MCS]
 gi|161485585|ref|YP_940731.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium sp. KMS]
          Length = 563

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 1  MTGQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV 34


>gi|119696868|gb|ABL93941.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium sp. KMS]
          Length = 586

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 24 MTGQEYDVVVVGSGAAGMVAALTAAHQGLSTIVV 57


>gi|15672922|ref|NP_267096.1| thioredoxin reductase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723876|gb|AAK05038.1|AE006328_6 thioredoxin reductase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406484|gb|ADZ63555.1| thioredoxin reductase [Lactococcus lactis subsp. lactis CV56]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV++IG G AG  AA   A+    T L+
Sbjct: 1  MTEKKYDVVIIGSGPAGMTAAMYTARSEMKTLLL 34


>gi|295425572|ref|ZP_06818261.1| thioredoxin-disulfide reductase [Lactobacillus amylolyticus DSM
          11664]
 gi|295064748|gb|EFG55667.1| thioredoxin-disulfide reductase [Lactobacillus amylolyticus DSM
          11664]
          Length = 308

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVI+IG G  G  AA  AA+   +  ++
Sbjct: 1  MAKEYDVIIIGAGPGGLTAALYAARANLNVLIL 33


>gi|290512579|ref|ZP_06551945.1| NADH oxidase family NADH:flavin oxidoreductase [Klebsiella sp.
           1_1_55]
 gi|289774920|gb|EFD82922.1| NADH oxidase family NADH:flavin oxidoreductase [Klebsiella sp.
           1_1_55]
          Length = 677

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           ++R  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VSRETNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|260771591|ref|ZP_05880511.1| NAD(FAD)-utilizing dehydrogenase [Vibrio metschnikovii CIP 69.14]
 gi|260613368|gb|EEX38567.1| NAD(FAD)-utilizing dehydrogenase [Vibrio metschnikovii CIP 69.14]
          Length = 395

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++   DVIVIG G AG   AA AA+ G    ++ H
Sbjct: 1  MSEQVDVIVIGAGAAGLMCAAQAAQRGRQVLVMDH 35


>gi|302548381|ref|ZP_07300723.1| putative flavoCytochrome c [Streptomyces hygroscopicus ATCC 53653]
 gi|302465999|gb|EFL29092.1| putative flavoCytochrome c [Streptomyces himastatinicus ATCC 53653]
          Length = 446

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 15/179 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++IG G AG  A A A + G S  L+   T  +G  +           H + +     
Sbjct: 7   DLLIIGAGMAGLTAGARAVRSGLSVVLVDTSTD-VGGSARFAGYAWTAPSHDIMDRHNPG 65

Query: 67  G---LMGRVADAAGIQFRVLNVKKGPAVRGPRT-------QADRELYRLAMQREILSQEN 116
           G   L   + D        +           R        Q D   Y    +R IL    
Sbjct: 66  GDLTLKRALVDRFDEGVSWIRSTGVEVKDAQRILSFGRGHQFDTGHYLDTCRRLILDGGG 125

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQ----DNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             ++        TE   +   +++     +  +     +L TG F   +    +   P 
Sbjct: 126 RLLLATHTEHLLTEHGAVVGALLRSADGTHRTVGARATLLATGGFQGDLALRTEHVHPH 184


>gi|168184009|ref|ZP_02618673.1| oligopeptide transport ATP-binding protein AppF [Clostridium
           botulinum Bf]
 gi|182672999|gb|EDT84960.1| oligopeptide transport ATP-binding protein AppF [Clostridium
           botulinum Bf]
          Length = 146

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 329 LEKVNIIRPGYA------IEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEAAAQ 381
           +EKV  I P YA      I Y  + P+     ++ K +  LF+ G+ +G   G+ EA   
Sbjct: 1   MEKVKYIDP-YAGGKGNSIRYLSVAPR--TDDMKVKGLDNLFVGGEKSGLFVGHTEAITT 57

Query: 382 GLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418
           G +AG N+ R    +  +   R+ + +G +I     K
Sbjct: 58  GSLAGHNAVRYCLGMPMLILPRSIA-LGDLIAYANHK 93


>gi|161598319|ref|YP_890167.2| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium smegmatis str.
          MC2 155]
          Length = 566

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 1  MTGQEYDVVVVGSGAAGMVAALTAAHQGLSTVVV 34


>gi|317374837|sp|A0R4S9|3O1D_MYCS2 RecName: Full=3-oxosteroid 1-dehydrogenase; AltName:
          Full=3-keto-Delta(4)-steroid Delta(1)-dehydrogenase;
          Short=KSDD; AltName: Full=3-oxo-Delta(4)-steroid
          1-dehydrogenase; Short=KSTD
 gi|118175016|gb|ABK75912.1| 3-ketosteroid dehydrogenase [Mycobacterium smegmatis str. MC2
          155]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV+V+G G AG  AA  AA  G ST ++
Sbjct: 4  MTGQEYDVVVVGSGAAGMVAALTAAHQGLSTVVV 37


>gi|114768867|ref|ZP_01446493.1| nopaline dehydrogenase, putative [alpha proteobacterium HTCC2255]
 gi|114549784|gb|EAU52665.1| nopaline dehydrogenase, putative [alpha proteobacterium HTCC2255]
          Length = 458

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           +D+I+IG G AG  AA  AA  G    L+  +    G +  N
Sbjct: 3  DFDIIIIGAGPAGMSAALTAANGGLDVLLLDEQPHAGGQIYRN 45


>gi|147676602|ref|YP_001210817.1| hypothetical protein PTH_0267 [Pelotomaculum thermopropionicum SI]
 gi|146272699|dbj|BAF58448.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 641

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+GGG AG EAA VAA+ G    L 
Sbjct: 383 VLVVGGGPAGLEAARVAARRGHKVILC 409


>gi|147678101|ref|YP_001212316.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
 gi|146274198|dbj|BAF59947.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
          Length = 432

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   +  IV+G G AG  AA + AK G    L         +       GG    H + +
Sbjct: 1  MEEKFAAIVVGAGPAGSTAAYLMAKAGLEVLL----IEKGAAPGSKNMFGGRMYSHALNQ 56

Query: 62 I 62
          +
Sbjct: 57 V 57


>gi|145299275|ref|YP_001142116.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Aeromonas
          salmonicida subsp. salmonicida A449]
 gi|142852047|gb|ABO90368.1| anaerobic glycerol-3- phosphate dehydrogenase subunit B
          [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 426

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +D IVIGGG AG  AA   A+ G  T L+ 
Sbjct: 2  KFDSIVIGGGMAGLSAALRLAEAGQKTLLMA 32


>gi|87125511|ref|ZP_01081356.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp.
          RS9917]
 gi|86166811|gb|EAQ68073.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp.
          RS9917]
          Length = 480

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G   A+I  +    G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLKVAIIETR-DMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   D L G    AA ++F 
Sbjct: 66 LADADHLAGFGIHAAPVRFE 85


>gi|326335005|ref|ZP_08201205.1| dihydrolipoyl dehydrogenase [Capnocytophaga sp. oral taxon 338
          str. F0234]
 gi|325692810|gb|EGD34749.1| dihydrolipoyl dehydrogenase [Capnocytophaga sp. oral taxon 338
          str. F0234]
          Length = 465

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
          ++YDVIVIG G  G  AA   A+LG  TA++  K +T+G    ++ C P+   L   HL+
Sbjct: 2  KNYDVIVIGAGPGGYVAAIRCAQLGKKTAIVE-KYNTLGGTCLNVGCIPSKALLDSTHLL 60

Query: 60 REIDALDGLMGRVA 73
           +        G   
Sbjct: 61 EDAHKHASSHGIEI 74


>gi|149276722|ref|ZP_01882865.1| probable secreted protein-putative xanthan lyase related
           [Pedobacter sp. BAL39]
 gi|149232391|gb|EDM37767.1| probable secreted protein-putative xanthan lyase related
           [Pedobacter sp. BAL39]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 37/196 (18%)

Query: 3   NRSY--DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            ++Y  D+I+ GG  A   AA  A+K+G    +++     +G MS +  +G    G+   
Sbjct: 26  QKNYTADIIIYGGTPAAITAAVQASKMGKKVIVVSPDL-HLGGMSSS-GLGFTDTGN--- 80

Query: 61  EIDALDGLMGRVADAAGIQFRVLNV----------KKG---PAVRGPRTQADRELYRLA- 106
               + GL         + +   +            KG   PA+ G    ADR ++    
Sbjct: 81  -KSVIGGLAREFYHRVYLHYSRDSAWVWQKRSEYGNKGQGTPAIDG----ADRTMWIFEP 135

Query: 107 --MQREILS--QEN-LDVIQGE----VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
              +R +    +EN L V + E      G   +   I S+             +  T  +
Sbjct: 136 HVAERIMEDFVRENKLVVYRNEWLDRKNGLIMKDGNIKSMSTLSGKKFSAKVFIDAT--Y 193

Query: 158 LRGVIHIGKLKIPAGR 173
              ++   K+    GR
Sbjct: 194 EGDLMAAAKVSYHIGR 209


>gi|117618810|ref|YP_856975.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Aeromonas
          hydrophila subsp. hydrophila ATCC 7966]
 gi|117560217|gb|ABK37165.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Aeromonas
          hydrophila subsp. hydrophila ATCC 7966]
          Length = 426

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +D IVIGGG AG  AA   A+ G  T L+ 
Sbjct: 2  KFDSIVIGGGMAGLSAALRLAEAGQKTLLMA 32


>gi|15920768|ref|NP_376437.1| hypothetical protein ST0549 [Sulfolobus tokodaii str. 7]
 gi|15621551|dbj|BAB65546.1| 517aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 517

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +NR YDV++IGGGH G  AA+  AK G   A+ 
Sbjct: 1  MNRIYDVVIIGGGHNGLVAASYLAKEGLKVAVF 33


>gi|323699828|ref|ZP_08111740.1| geranylgeranyl reductase [Desulfovibrio sp. ND132]
 gi|323459760|gb|EGB15625.1| geranylgeranyl reductase [Desulfovibrio desulfuricans ND132]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 29/171 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +N+++D IV GG  AG  AA   A+   S  ++            +   GGL     V+ 
Sbjct: 1   MNKTFDAIVCGGSLAGSAAAVTLARQNRSVLVL-----DKAEFPRSKLCGGLLTWKSVQL 55

Query: 61  ---------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQAD-RELYRLA 106
                    E  A  G++  V+D   I+     + +G          R + D R LY + 
Sbjct: 56  LGLLFGETPETMAEHGIIRYVSDRYSIRTFTSTLAEGTVSYPFHLTDRAELDNRLLYHVR 115

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
               +       V +GE             +V++D    R   ++   G  
Sbjct: 116 RAGAL-------VREGE--EVAACDPASGEVVLKDGRTARGRYIIGADGAH 157


>gi|206581010|ref|YP_002240457.1| NADH:flavin oxidoreductase, NADH oxidase family [Klebsiella
           pneumoniae 342]
 gi|206570068|gb|ACI11844.1| NADH:flavin oxidoreductase, NADH oxidase family [Klebsiella
           pneumoniae 342]
          Length = 677

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           ++R  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VSRETNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|154493457|ref|ZP_02032777.1| hypothetical protein PARMER_02796 [Parabacteroides merdae ATCC
           43184]
 gi|154086667|gb|EDN85712.1| hypothetical protein PARMER_02796 [Parabacteroides merdae ATCC
           43184]
          Length = 620

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 105/348 (30%), Gaps = 67/348 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYD++++GG   G  AA  AA++G  + +          +   PA G        R   A
Sbjct: 22  SYDLVIVGGNPGGIMAAISAARMGKKSVI----LERTRYVGGLPANGLGATDIATR--AA 75

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----RLAMQREILSQEN--- 116
             GL     D     +       GP     +  +D   +         Q+ +  Q++   
Sbjct: 76  TTGLFREFVDGVKQHYI---DTYGPGSEQVKVCSDGYHFEPSVGARIFQKMLDGQKDKIT 132

Query: 117 -LDVIQ--GEVAGFNTEKNIISSIVM----------QDNSMIRCSTVVLTTGTFLR---- 159
            L + Q   E        N I  I +             S+   +T     G        
Sbjct: 133 VLTMRQFDAEDENIVMRDNRIEKIRILNRETGEMEEYTGSVFLDATYEGDLGAAAGVPFR 192

Query: 160 ----GVIHIGK------LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI 209
               G    G+       K   G  GD  +    N+   +++               K  
Sbjct: 193 VGREGKDEFGEPGAGRVYKYWGGPEGDGSTFKKDNAVQSYNYRLCLTNNPANRVAFTKPA 252

Query: 210 IWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            +++ +           S + D  T R  +  + R   E      EN KH        K 
Sbjct: 253 RYNRED---------YASIVEDVWTGRNTDAAMQRVTPEMME---ENRKHIK-AGNPSKL 299

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEE 317
            G ++  +    IV       H   ++ +  N   V+    ST LPEE
Sbjct: 300 PGDKWGIAKITNIV-------HVPNMKTDANNQHGVFV---STDLPEE 337


>gi|288937157|ref|YP_003441216.1| 2,4-dienoyl-CoA reductase (NADPH) [Klebsiella variicola At-22]
 gi|288891866|gb|ADC60184.1| 2,4-dienoyl-CoA reductase (NADPH) [Klebsiella variicola At-22]
          Length = 677

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           ++R  +V+VIG G AG EAA  AA++G  T L+  K
Sbjct: 380 VSRETNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415


>gi|254822668|ref|ZP_05227669.1| FAD dependent oxidoreductase, putative [Mycobacterium
          intracellulare ATCC 13950]
          Length = 518

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 21/47 (44%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YD IVIG GH G  AA + AK G  T  +  K    G  S      G
Sbjct: 4  YDAIVIGAGHNGLTAAVLLAKAGLRTVCLDPKLYAGGMASTVELFDG 50


>gi|254695561|ref|ZP_05157389.1| hypothetical protein Babob3T_13167 [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215955|ref|ZP_05930236.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917562|gb|EEX84423.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 73/247 (29%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P+          D     L +G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPAAIFGTGLSMIDSVLSLLDSGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|183222355|ref|YP_001840351.1| alkyl hydroperoxide reductase subunit F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912402|ref|YP_001963957.1| alkyl hydroperoxide reductase large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777078|gb|ABZ95379.1| Alkyl hydroperoxide reductase, large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780777|gb|ABZ99075.1| Alkyl hydroperoxide reductase subunit F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 519

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 69/217 (31%), Gaps = 42/217 (19%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  YDV VIGGG +G  AA  AA+ G  T +I               +GG  K  L  E 
Sbjct: 214 SEIYDVTVIGGGPSGVTAAVYAARKGLRTLVIA------------DRLGGQVKDTLGIE- 260

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-- 120
                              +        +     Q ++          I  +EN+ V   
Sbjct: 261 ---------------NIISIPYTTGPELIHVLADQLEKNQ--------IKKKENVRVQKI 297

Query: 121 ---QGEVAGFNT-EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              Q ++   NT EK +  ++++   +  R   V        +GV +      P  +  D
Sbjct: 298 EQGQTKIIHLNTGEKILSKTVILSTGAKWRELNVPGEKEFVGKGVAYCPHCDGPFFKDKD 357

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
                  NS ++   D   +         G  +  DK
Sbjct: 358 VAVIGGGNSGVEAALDLSGIVKSVTLVEFGDKLNADK 394


>gi|118589828|ref|ZP_01547232.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Stappia aggregata IAM
           12614]
 gi|118437325|gb|EAV43962.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Stappia aggregata IAM
           12614]
          Length = 400

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLGKGH 57
             +D+ ++GGG +G  AA   A+ G S  LI           T         +  +G   
Sbjct: 8   EQFDIAIVGGGPSGRIAALALAQQGLSCVLIAPTLDQQDCRTTALWQKSIDLLRDIGVWP 67

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR---TQADRELYRLAMQREILSQ 114
            + E +A      R+ D+ G  FR   V    +  G              + +++   +Q
Sbjct: 68  AI-EGNAEALKKMRMIDSTGRLFRAPEVVFDCSELGLEEFGFNILNSELNVFLEKACAAQ 126

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +L++I   V            +      +I  S  V   G
Sbjct: 127 PSLEMIADTVETAEFGDEQAI-LFTSGGMIISTSLAVAADG 166


>gi|312792990|ref|YP_004025913.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180130|gb|ADQ40300.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 462

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 144/481 (29%), Gaps = 110/481 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAA------VAAK-----------------------LGASTA 32
           ++  YDVI++G G  G   A        AAK                        G    
Sbjct: 1   MSTVYDVIIVGAGPCGIFTAYELVKTSSAAKVVIFEKGRDIESRECPKRVTNVCSGCKPC 60

Query: 33  LITHKTSTIGS-----MSCNPAIGGL-----GKGHLVREIDALDGLMGRV---ADAAGIQ 79
            IT   S  G+     +S +P +GG      G+   V  I  +D +           G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFVGQSKAVELIKYVDSIYLENGADTKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDV-IQGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRLQDFLLSN--NIEIKFKTPVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E    + +V +D S+ R   VV+  G    G   + K+        ++    +     
Sbjct: 179 IVEDGKAAGVVAEDGSIYRAKNVVICVG--REGASWLSKIIEKYNIPCENNRVDIGVRVE 236

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQIECG 241
                    K  T    + K I + KT     D+++  F          +   N  +  G
Sbjct: 237 T---PNHIWKGITEHLYESKFIYYTKT----FDDKVRTFCMNPGGYVAVEHYDNLAVVNG 289

Query: 242 ITRTNLE---------THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +  N++           +   +  K S  Y   I              + R+G+     
Sbjct: 290 HSYKNIKSDNTNFALLVSKHFTDPFKDSIKYGKYIAELANMLSGGK-VLVQRYGD----- 343

Query: 293 IFLEPEGLNTDVVYPNG--------------ISTALPEEIQHQFIRTIPGLEK-----VN 333
            F+   G  ++                    +S  LP  I       I  L+       +
Sbjct: 344 -FIR--GRRSNEERIKRNSVVPTLTDAVAGDLSLVLPYRIMLDIKEMIEALDYVVQGVAS 400

Query: 334 IIRPGYAIE-YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSAR 391
                Y +E   Y N  ++    E   I  L+  G   G T G  +A+  G++     A 
Sbjct: 401 FDTLLYGVEVKFYSNEVKVKNNFECLTIQNLYFGGDGAGITRGLMQASVNGVLIAREIAS 460

Query: 392 K 392
           K
Sbjct: 461 K 461


>gi|149927235|ref|ZP_01915492.1| HI0933-like protein [Limnobacter sp. MED105]
 gi|149824174|gb|EDM83395.1| HI0933-like protein [Limnobacter sp. MED105]
          Length = 409

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + +DVIVIG G AG   AA A + G   AL+ H 
Sbjct: 2  QQFDVIVIGAGAAGLMCAAQAGQGGLRVALLDHS 35


>gi|302543430|ref|ZP_07295772.1| putative oxidoreductase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461048|gb|EFL24141.1| putative oxidoreductase [Streptomyces himastatinicus ATCC 53653]
          Length = 914

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GAS  L+
Sbjct: 26 DVLVIGGGTAGTMAALTAAERGASVLLL 53


>gi|139438268|ref|ZP_01771821.1| Hypothetical protein COLAER_00810 [Collinsella aerofaciens ATCC
           25986]
 gi|133776465|gb|EBA40285.1| Hypothetical protein COLAER_00810 [Collinsella aerofaciens ATCC
           25986]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +V+V+G G AG EAA +AAK G +  L+  +    G M    A     K  L R I 
Sbjct: 273 NVLVVGAGPAGMEAAYIAAKRGYNVVLVDKQDEPGGEMRI--AAVPPAKQELTRVIK 327


>gi|86742562|ref|YP_482962.1| soluble pyridine nucleotide transhydrogenase [Frankia sp. CcI3]
 gi|86569424|gb|ABD13233.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Frankia sp. CcI3]
          Length = 470

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDV+VIG G  G +AA  AAKLG   A++  K   IG +S N    G      +R
Sbjct: 1   MFD--YDVLVIGSGPGGQKAAIAAAKLGRRVAIVD-KREMIGGVSINT---GTIPSKTLR 54

Query: 61  EIDALDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           E       M +  +  G  +RV  ++  G      R    RE   + + R  LS+ ++ +
Sbjct: 55  EAVLYLTGMSQ-RELYGSSYRVKDDITVGDLSARTRHVISRE---IDVIRNQLSRNHVTL 110

Query: 120 IQGEVAGFNTEKNIIS-SIVMQDNSMIRCSTVVLTTGT 156
           + G  +  +     +       ++  I+   +++ TGT
Sbjct: 111 LTGLASFVDPHTVNVRAGGEDTEDRRIQAERIIIATGT 148


>gi|78186657|ref|YP_374700.1| dihydrolipoamide dehydrogenase [Chlorobium luteolum DSM 273]
 gi|78166559|gb|ABB23657.1| dihydrolipoamide dehydrogenase [Chlorobium luteolum DSM 273]
          Length = 472

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHL 58
           R  DV VIG G  G EAA +AA++G   ALI            G +     +       L
Sbjct: 14  RKVDVAVIGSGPGGYEAALLAARMGMQVALIEKSALGGVCVNWGCIPTKALLRSAEAFDL 73

Query: 59  VREIDALD----GLMGRVADAA-GIQFRVLNVKKG 88
           VR+  AL     G    +A A    +  VL + KG
Sbjct: 74  VRKGAALGLHAPGASFELAAAVKRSRTVVLKISKG 108


>gi|99079882|ref|YP_612036.1| HI0933-like protein [Ruegeria sp. TM1040]
 gi|99036162|gb|ABF62774.1| HI0933-like protein [Ruegeria sp. TM1040]
          Length = 399

 Score = 45.7 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          + +D +VIGGG AG  AA   A+ G    L+  K S
Sbjct: 2  QDWDAVVIGGGPAGLMAAGEVARQGHRVLLVEAKPS 37


>gi|331673254|ref|ZP_08374022.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA280]
 gi|331069452|gb|EGI40839.1| putative electron transfer flavoprotein-quinone oxidoreductase
          YdiS [Escherichia coli TA280]
          Length = 429

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMAQAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|218699737|ref|YP_002407366.1| hypothetical protein ECIAI39_1358 [Escherichia coli IAI39]
 gi|218369723|emb|CAR17492.1| putative oxidoreductase subunit with FAD/NAD(P)-binding domain
          [Escherichia coli IAI39]
          Length = 429

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMAQAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|194014803|ref|ZP_03053420.1| dihydrolipoyl dehydrogenase [Bacillus pumilus ATCC 7061]
 gi|194013829|gb|EDW23394.1| dihydrolipoyl dehydrogenase [Bacillus pumilus ATCC 7061]
          Length = 460

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YD+ VIGGG  G  AA  AA+ G   ALI
Sbjct: 1  MTKTYDLTVIGGGPGGYTAALQAAERGRKVALI 33


>gi|170684211|ref|YP_001743554.1| hypothetical protein EcSMS35_1496 [Escherichia coli SMS-3-5]
 gi|170521929|gb|ACB20107.1| protein FixC homolog [Escherichia coli SMS-3-5]
          Length = 429

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVAALVMAQAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|72163095|ref|YP_290752.1| geranylgeranyl reductase [Thermobifida fusca YX]
 gi|71916827|gb|AAZ56729.1| geranylgeranyl reductase, plantal and prokaryotic [Thermobifida
           fusca YX]
          Length = 435

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVIV+G G AG  AA   A  G    L+  KT+      C   +       LV   
Sbjct: 16  HEEADVIVVGAGPAGSTAAHYLATAGLDVLLLE-KTAFPREKVCGDGLTPRAVKQLVAMG 74

Query: 63  DALDGLMGRVADA--------AGIQFRVLNVKK--GPAVRGPRTQADRELYRLAMQREIL 112
             ++   G + +           ++     + +  G  +   R   D+ L R A++  + 
Sbjct: 75  IPINEEDGWIRNRGLRIIGGGTRLELPWPELSEYPGFGLVRTRYDFDQILARHAVKTGVR 134

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQD----NSMIRCSTVVLTTGTFLR 159
             E  +V        +   N +  +  +D        R   V+   G   R
Sbjct: 135 LLERTNV---TAPIIDERSNRVVGVQAKDAEGRIRSFRAPLVLAADGNSSR 182


>gi|118676|sp|P14218|DLDH_PSEFL RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|151345|gb|AAA99234.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens]
          Length = 478

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------------IGSMSCNPA 49
           +++ +DV+VIG G  G  AA  AA+LG  TA I                  +G +     
Sbjct: 1   MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60

Query: 50  IGGLGKGHLVREIDALDGL--MGRVADAAGIQFRVLNVKKG 88
           +    K H  +E   + G+   G   D   +  R  N+ K 
Sbjct: 61  LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKN 101


>gi|254239935|ref|ZP_04933257.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa 2192]
 gi|126193313|gb|EAZ57376.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa 2192]
          Length = 478

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------------IGSMSCNPA 49
           +++ +DV+VIG G  G  AA  AA+LG  TA I                  +G +     
Sbjct: 1   MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60

Query: 50  IGGLGKGHLVREIDALDGL--MGRVADAAGIQFRVLNVKKG 88
           +    K H  +E   + G+   G   D   +  R  N+ K 
Sbjct: 61  LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKN 101


>gi|15596784|ref|NP_250278.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa PAO1]
 gi|107101020|ref|ZP_01364938.1| hypothetical protein PaerPA_01002050 [Pseudomonas aeruginosa PACS2]
 gi|116049532|ref|YP_791664.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987636|ref|YP_001349041.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa PA7]
 gi|218892456|ref|YP_002441323.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa LESB58]
 gi|254234688|ref|ZP_04928011.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa C3719]
 gi|296390038|ref|ZP_06879513.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa PAb1]
 gi|313106601|ref|ZP_07792827.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa 39016]
 gi|81541333|sp|Q9I3D1|DLDH2_PSEAE RecName: Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex;
           AltName: Full=Glycine oxidation system L-factor;
           AltName: Full=LPD-GLC
 gi|320391|pir||A45796 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Pseudomonas
           fluorescens
 gi|9947550|gb|AAG04976.1|AE004586_14 lipoamide dehydrogenase-glc [Pseudomonas aeruginosa PAO1]
 gi|115584753|gb|ABJ10768.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166619|gb|EAZ52130.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa C3719]
 gi|150962794|gb|ABR84819.1| dihydrolipoyl dehydrogenase [Pseudomonas aeruginosa PA7]
 gi|218772682|emb|CAW28467.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa LESB58]
 gi|310879329|gb|EFQ37923.1| lipoamide dehydrogenase-glc [Pseudomonas aeruginosa 39016]
          Length = 478

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------------IGSMSCNPA 49
           +++ +DV+VIG G  G  AA  AA+LG  TA I                  +G +     
Sbjct: 1   MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60

Query: 50  IGGLGKGHLVREIDALDGL--MGRVADAAGIQFRVLNVKKG 88
           +    K H  +E   + G+   G   D   +  R  N+ K 
Sbjct: 61  LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKN 101


>gi|328951522|ref|YP_004368857.1| dihydrolipoamide dehydrogenase [Marinithermus hydrothermalis DSM
           14884]
 gi|328451846|gb|AEB12747.1| dihydrolipoamide dehydrogenase [Marinithermus hydrothermalis DSM
           14884]
          Length = 462

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 35/166 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLVRE 61
           D IVIG G AG   A    + G  T L+   T        G +     I      H VR 
Sbjct: 5   DAIVIGAGMAGIPLAIRLGRKGLHTLLVEKDTLGGTCLNRGCIPTKTLIASAKVAHQVRR 64

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQ----REILSQEN 116
                 ++                 +GP      R  A ++    A++    R +    N
Sbjct: 65  ALEYGVVI-----------------EGPVRFDLARAVARKDALVRAIREGAARNLERTPN 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +++IQGE   F  E+ +        + + R   V + TG   RG I
Sbjct: 108 VELIQGEA-RFVEERTVAVG-----DRVYRAEWVFINTGA--RGRI 145


>gi|326333724|ref|ZP_08199958.1| putative oxidoreductase [Nocardioidaceae bacterium Broad-1]
 gi|325948502|gb|EGD40608.1| putative oxidoreductase [Nocardioidaceae bacterium Broad-1]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M    YDV+V GGGH G  AAA  ++ G S  ++  +   +G
Sbjct: 1  MSQEKYDVVVAGGGHNGLTAAAYLSRAGLSVLVLE-RLDHVG 41


>gi|258405585|ref|YP_003198327.1| geranylgeranyl reductase [Desulfohalobium retbaense DSM 5692]
 gi|257797812|gb|ACV68749.1| geranylgeranyl reductase [Desulfohalobium retbaense DSM 5692]
          Length = 384

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 58/218 (26%), Gaps = 30/218 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG----------GL 53
             +D IV+GGG +GC AA   A  G    L                 G            
Sbjct: 2   HRFDAIVVGGGPSGCAAAKGIADAGGEVLL----LDKAAFPRPKLCAGVITAKTVAVVER 57

Query: 54  GKGHLVREIDALDGLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
             G     + A   L           + RVL      A    R    R    L +QR   
Sbjct: 58  VFGLDTASLHACGALKAATPRYRVVTRQRVLLED--SAPDPFRLVERRSFDHLLLQRAAA 115

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH--------- 163
           +     V +  V G +  +     +        +   V+   G   R   H         
Sbjct: 116 AGARC-VTETPVTGIDPRRGE---VKTAAGETFQARVVIGADGVHSRVRRHLTPRVQARR 171

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTP 201
             + ++       +P   L +S        G ++ G  
Sbjct: 172 YWRQRLAHCVEIVAPLQDLTHSHTSLGLHLGYVRHGYA 209


>gi|188586464|ref|YP_001918009.1| NADH:flavin oxidoreductase/NADH oxidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351151|gb|ACB85421.1| NADH:flavin oxidoreductase/NADH oxidase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 667

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  DV+V+GGG AG EAA VAA  G   +L             N ++GG      V E
Sbjct: 403 KQKDVMVVGGGIAGMEAARVAAIRGHKVSLYE----------KNNSLGGHVVEASVPE 450


>gi|157691956|ref|YP_001486418.1| dihydrolipoyl dehydrogenase [Bacillus pumilus SAFR-032]
 gi|157680714|gb|ABV61858.1| dihydrolipoyl dehydrogenase [Bacillus pumilus SAFR-032]
          Length = 460

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YD+ VIGGG  G  AA  AA+ G   ALI
Sbjct: 1  MTKTYDLTVIGGGPGGYTAALQAAERGQKVALI 33


>gi|94986810|ref|YP_594743.1| thioredoxin reductase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731059|emb|CAJ54422.1| Thioredoxin reductase [Lawsonia intracellularis PHE/MN1-00]
          Length = 308

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + YD IV+GGG AG  AA    + G S ALI  
Sbjct: 2  KQYDSIVVGGGPAGLTAALYLCRSGLSVALIEM 34


>gi|45655654|ref|YP_003463.1| putative FAD-dependent dehydrogenase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45602625|gb|AAS72100.1| putative FAD-dependent dehydrogenase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 518

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL- 65
           +VIV+G G AG  A       G    L+         M     +  +   H V E     
Sbjct: 84  EVIVVGAGPAGLFACLQLILSGFKPILLERGKD---VMKRPFDLKEVNIHHNVNEDSNYC 140

Query: 66  ----------DGLMGRVADAAGIQFRVLNVKKGPA----------VRGPRTQADRELYRL 105
                     DG +   +   G   ++L    G                  +  +     
Sbjct: 141 FGEGGAGTYSDGKLYTRSKKRGNVRQILEWLVGFGANKDILVEAHPHIGTNKLPKI--VK 198

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            ++ +I+        +  V       N I  +V +D   +    ++L TG   R +
Sbjct: 199 NIREKIIETGGEIHFEKRVTDLLLNGNQIQGVVTKDGDKVYAKNIILATGHSARDI 254


>gi|24217150|ref|NP_714633.1| hypothetical protein LB_089 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24202188|gb|AAN51648.1| putative FAD-dependent dehydrogenase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 518

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL- 65
           +VIV+G G AG  A       G    L+         M     +  +   H V E     
Sbjct: 84  EVIVVGAGPAGLFACLQLILSGFKPILLERGKD---VMKRPFDLKEVNIHHNVNEDSNYC 140

Query: 66  ----------DGLMGRVADAAGIQFRVLNVKKGPA----------VRGPRTQADRELYRL 105
                     DG +   +   G   ++L    G                  +  +     
Sbjct: 141 FGEGGAGTYSDGKLYTRSKKRGNVRQILEWLVGFGANKDILVEAHPHIGTNKLPKI--VK 198

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            ++ +I+        +  V       N I  +V +D   +    ++L TG   R +
Sbjct: 199 NIREKIIETGGEIHFEKRVTDLLLNGNQIQGVVTKDGDKVYAKNIILATGHSARDI 254


>gi|15613234|ref|NP_241537.1| hypothetical protein BH0671 [Bacillus halodurans C-125]
 gi|10173285|dbj|BAB04390.1| BH0671 [Bacillus halodurans C-125]
          Length = 424

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + +DV+++GGG AG  AA   AK   S  L+
Sbjct: 1  MTKHWDVVIVGGGLAGYVAALFLAKANVSVLLV 33


>gi|83943009|ref|ZP_00955469.1| sarcosine oxidase, alpha subunit family protein [Sulfitobacter sp.
           EE-36]
 gi|83846017|gb|EAP83894.1| sarcosine oxidase, alpha subunit family protein [Sulfitobacter sp.
           EE-36]
          Length = 1005

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGG AG EAA  AA  GA   ++     T       P  GG   G  V   D +D
Sbjct: 170 DVLIIGGGVAGLEAARTAALSGAKVIVLEQ---TAHWGGRAPVDGGTVDGTPV--ADFID 224

Query: 67  GLMGRVADAAGIQFRV 82
            L+  +++ A +  R 
Sbjct: 225 ALVAELSEMANVTLRT 240


>gi|332879601|ref|ZP_08447296.1| FAD dependent oxidoreductase [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332682567|gb|EGJ55469.1| FAD dependent oxidoreductase [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 497

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YDV+VIG G  G E A + ++ G    ++  
Sbjct: 2  KYDVVVIGSGLGGLECAYILSRAGLRVLVLEQ 33


>gi|284042530|ref|YP_003392870.1| FAD dependent oxidoreductase [Conexibacter woesei DSM 14684]
 gi|283946751|gb|ADB49495.1| FAD dependent oxidoreductase [Conexibacter woesei DSM 14684]
          Length = 545

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIG GH G   A   A+ G    ++     T+G    N      G+G L        
Sbjct: 3   DVIVIGAGHNGLTCACYLARAGLDVLVLEQS-DTVGGC-INTRDLPDGRGRLELGAYEHG 60

Query: 67  GL--MGRVAD-----AAGIQFR-VLNVKKGPAVRGPRTQA 98
           G+   G  AD       G++F     V  GPA  G R   
Sbjct: 61  GIRGSGVAADLELETRHGLRFHLRDEVTLGPADDGARIAF 100


>gi|290894364|ref|ZP_06557328.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556071|gb|EFD89621.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
           +V+VIGGG AG EAA  AA++G +T LI     T
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEANKQT 418


>gi|315646950|ref|ZP_07900064.1| hypothetical protein PVOR_16369 [Paenibacillus vortex V453]
 gi|315277602|gb|EFU40927.1| hypothetical protein PVOR_16369 [Paenibacillus vortex V453]
          Length = 462

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++++DV++IGGG AG  A+   A+ G S  L
Sbjct: 21 DKTFDVVIIGGGLAGLTASIYLARSGLSVLL 51


>gi|302886344|ref|XP_003042062.1| hypothetical protein NECHADRAFT_97389 [Nectria haematococca mpVI
           77-13-4]
 gi|256722970|gb|EEU36349.1| hypothetical protein NECHADRAFT_97389 [Nectria haematococca mpVI
           77-13-4]
          Length = 785

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           N++YD IV+GGG AG  AA   A+ G S  LI
Sbjct: 238 NQTYDAIVVGGGPAGIIAAERLAEKGISVLLI 269


>gi|16082457|ref|NP_394946.1| geranylgeranyl reductase related protein [Thermoplasma acidophilum
           DSM 1728]
 gi|10640835|emb|CAC12613.1| geranylgeranyl reductase related protein [Thermoplasma acidophilum]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 52/179 (29%), Gaps = 21/179 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------KGH--L 58
           DVIVIG G +G  AA   AK G +  ++         + C   +          K     
Sbjct: 3   DVIVIGAGPSGSFAAYRLAKAGFTVDILEEHREVGKPVECTGLVSQRVLKYVRTKSIAGT 62

Query: 59  VREIDAL----DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           VR  +        +     D   + FR    K   A+        R              
Sbjct: 63  VRGANIFFPNGKSVHIEKDDPTIVLFRDAFDKDVAAMAIGAGSGIRI--NARALSVTEHD 120

Query: 115 ENLDVIQGEVAGFNTEKNIIS-------SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           +++ V   E      E   I        S+V +D   +R   VV T    +   I    
Sbjct: 121 DHVTVRYRENGSIKEEDARIVIGADGINSVVRRDVYGMRQKHVVSTLQYDMASGIEDED 179


>gi|309775586|ref|ZP_07670586.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916680|gb|EFP62420.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  +V+VIGGG AG EAA  AA++G +T LI  K   +G +S       + K    R 
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIE-KEDHVGGLSV-----AISKIPDKRR 432

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +      +   A +             PA         + L    +     S   L  I 
Sbjct: 433 LRDFPDYLIHRAQSLRNLITFTETTATPA-------FVKMLKPDFIINATGSTPLLPPIS 485

Query: 122 GEVAGFNTEKNIISSI 137
           G     + E + +S I
Sbjct: 486 GLRENIDAEGSRVSGI 501


>gi|257789911|ref|YP_003180517.1| NADH:flavin oxidoreductase/NADH oxidase [Eggerthella lenta DSM
           2243]
 gi|257473808|gb|ACV54128.1| NADH:flavin oxidoreductase/NADH oxidase [Eggerthella lenta DSM
           2243]
          Length = 761

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V+V+GGG AG EAA +AA  G   ++        GS+        + KG 
Sbjct: 506 VMVVGGGPAGMEAARIAALRGHQVSMF----EKTGSLGGMLGFASMVKGP 551


>gi|114564846|ref|YP_752360.1| twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
 gi|114336139|gb|ABI73521.1| Twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  AA+ GA  A++
Sbjct: 88  TQTFDVVVVGAGASGVPAALSAAENGAKVAVL 119


>gi|114048279|ref|YP_738829.1| twin-arginine translocation pathway signal [Shewanella sp. MR-7]
 gi|113889721|gb|ABI43772.1| Twin-arginine translocation pathway signal [Shewanella sp. MR-7]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  AA+ GA  A++
Sbjct: 82  TQTFDVVVVGAGASGVPAALSAAENGAKVAVL 113


>gi|332306074|ref|YP_004433925.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173403|gb|AEE22657.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 385

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D  ++GGG  G   A   A+ G S AL+             P +         + + A 
Sbjct: 2   FDFCIVGGGMVGATTALGLAQKGFSVALVETNMPKPFEHDDEPDMRVSAISVTSQLLLAS 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYRLA-------MQREILSQ 114
            G    +A      +R L+V + P  R        QA+R  Y +        +   +   
Sbjct: 62  LGAWSHIAKMRTCSYRRLSVWEAPTARTDFDSADIQAERLGYIIENRILQLGIHEALAQL 121

Query: 115 ENLD-VIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLR 159
           +N+    Q E+          S   +   D++ + C  ++   G   R
Sbjct: 122 QNVTWFTQSEITNIAPGSTKQSGAQVHFSDDTELTCKWLIGADGLHSR 169


>gi|326799971|ref|YP_004317790.1| dihydrolipoyl dehydrogenase [Sphingobacterium sp. 21]
 gi|326550735|gb|ADZ79120.1| Dihydrolipoyl dehydrogenase [Sphingobacterium sp. 21]
          Length = 463

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHL 58
           M  R YD IVIG G AG   A   A  G   A+I  +    T  +  C P    +     
Sbjct: 1   MKIRQYDAIVIGSGQAGVPLAKKLANHGKKVAIIEKRWIGGTCVNDGCTPTKTWIASAKA 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             +       +G   + A I   ++  +K   V   R+           Q+ + S +NLD
Sbjct: 61  AYDAHKST-ELGVFVEDAKIDMTIIKKRKDKIVENARSGN---------QKALESTKNLD 110

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           VI GE A           +            ++     FL 
Sbjct: 111 VIFGEAA---FTDFKTIGVTSDTG----SQQIMKADLFFLN 144


>gi|149197979|ref|ZP_01875027.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Lentisphaera araneosa HTCC2155]
 gi|149138891|gb|EDM27296.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Lentisphaera araneosa HTCC2155]
          Length = 583

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 115/403 (28%), Gaps = 91/403 (22%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  D  V+GGG AG  A+  AA+ G  T L          +     +GG        EI 
Sbjct: 16  KQADFCVVGGGMAGVCASIAAARRGLKTIL----------IQDRSVLGGNASS----EIR 61

Query: 64  ALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G  G     AGI   ++            T  D  LY +        +ENL+VI  
Sbjct: 62  MWICGARGADNKEAGILEEIMLRNIYYNSEMKYTLWDDVLYGI-----CREEENLEVIYS 116

Query: 123 -EVAGFNTEKNIISSI----VMQDNS-MIRCSTVVLTTGTFL---------RGVIHIGKL 167
             V    TE + I S+    + +     ++       +G  +          G    G+ 
Sbjct: 117 CSVNEVKTEGSKIRSVAAWHLTRQCWVEVQADFFADCSGDSVLRISGAETRHGREARGEF 176

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
                           +  M+     G  +         K   + + E +  +      +
Sbjct: 177 DESHAPEQADDKTMGSSILMQLREVPGHKEPFVAPPWARK---FKREELESRNLTPKHNN 233

Query: 228 FMT-----------DKITNRQIECGITR------TNLETHRIIMENIKHSAIYSGDIKSY 270
           F             D    R     I         N  +   I +N     + S   K  
Sbjct: 234 FWWLEFGGLMDTLDDADDIRDEAMSIAYGVWGMMKNDPSG--ICDNWTLEWVGSLPGKRE 291

Query: 271 GPRY------CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR 324
             RY        +  +K  RF +R  H  + E +  + D +   G  T            
Sbjct: 292 NIRYVGDHLLTQNDLEKEGRFDDRVCHGGW-EMDDHHPDAIAYRGFPT---------IFH 341

Query: 325 TIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
             P           Y I Y          +L +K IS LF AG
Sbjct: 342 ETPHC---------YGIPY---------RSLYSKDISNLFFAG 366


>gi|240172206|ref|ZP_04750865.1| putative oxidoreductase [Mycobacterium kansasii ATCC 12478]
          Length = 521

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + YD +V+GGGH G  AAA  A+ G +  L+             P IGG        E
Sbjct: 2  QEYDAVVVGGGHNGLVAAAYLARAGLAVRLLE----------RLPNIGGAAVSAQAFE 49


>gi|188589991|ref|YP_001919851.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188500272|gb|ACD53408.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 318

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 38/153 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++VIGGG AG  AA  AA+ G +  LI                       + RE  +
Sbjct: 3   EYDLVVIGGGIAGMTAALGAAREGINNILI-----------------------VERE-HS 38

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE- 123
           L G++ +       +  V     GP             Y   ++ ++    N+D+     
Sbjct: 39  LGGILNQCIHNDFGEKFVGEKVTGP------------EYIFFIEEKLKKL-NIDIKLNTN 85

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           V     +  I     ++ +  I    ++L TG+
Sbjct: 86  VIDIIDDNKITYVNSIEGSKEINTKAIILATGS 118


>gi|163746639|ref|ZP_02153996.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
 gi|161379753|gb|EDQ04165.1| dihydrolipoamide dehydrogenase [Oceanibulbus indolifex HEL-45]
          Length = 464

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G  AA   A+LG   A++       I    G +     +     
Sbjct: 1   MAAKSFDLIVIGAGPGGYVAAIRGAQLGLKVAIVERENLGGICLNWGCIPTKALLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL     D       V+   +G A      Q +  +  L  + ++    
Sbjct: 61  FHLMHRAKDF-GLTADKID--YDLEAVVKRSRGVAK-----QMEGGVKHLLKKNKVE--- 109

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              V  GE +     K  +S    + +  +    +VL TG   R +
Sbjct: 110 ---VFMGEAS--IPAKGKVSVKSDKGHEDLTAKNIVLATGARAREL 150


>gi|113476069|ref|YP_722130.1| L-aspartate oxidase [Trichodesmium erythraeum IMS101]
 gi|110167117|gb|ABG51657.1| L-aspartate oxidase [Trichodesmium erythraeum IMS101]
          Length = 571

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 71/193 (36%), Gaps = 49/193 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG-------- 56
            +D+IV+G G AG  AA     +    AL+T  T  +G  S N A GG+           
Sbjct: 12  HFDIIVVGSGAAGLYAALCL-PVHLRVALVTKNTINMG--SSNYAQGGIAAAIDPADNPI 68

Query: 57  -HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQRE---- 110
            HL   + A  GL     D   ++F V N  +  A         DR+  +LAM  E    
Sbjct: 69  LHLEDTLKAGVGL----CDQEAVRFMVDNAARAIAHLVEMGVAFDRKGKKLAMTLEAAHS 124

Query: 111 --------------------ILSQ--ENLDVIQGEVAG---FNTEKNIISSIVMQDNSMI 145
                               I +Q   N+ +I   VA      T+K  +  I +     I
Sbjct: 125 HPRVLHSADTTGRAIIDTLVIEAQERPNIQIISQAVALNLWLATQKARVQGISLLHEGKI 184

Query: 146 ---RCSTVVLTTG 155
              + S VVL TG
Sbjct: 185 QWLKSSVVVLATG 197


>gi|300709867|ref|YP_003735681.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
 gi|299123550|gb|ADJ13889.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
          Length = 306

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+++GGG AGC A    A+ G  TA+ 
Sbjct: 13 DYDVVIVGGGPAGCSAGVFTARYGLETAIF 42


>gi|297181568|gb|ADI17753.1| glycine/d-amino acid oxidases (deaminating) [uncultured nuHF1
           cluster bacterium HF0130_31E21]
          Length = 428

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++ DV ++G G AG  AA + A+ G S  +   +    G+ S N   GG+  G++   
Sbjct: 25  VQKTCDVAIVGAGFAGLTAALILARAGRSVQVFDKQRPGEGASSRN---GGIVSGNIKMA 81

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
              +    G     A          +G A R    +  ++ 
Sbjct: 82  FSDMVSTFGEATAKAI-------YSEGVAARQDVARFIQDE 115


>gi|294674025|ref|YP_003574641.1| glucose inhibited division protein A [Prevotella ruminicola 23]
 gi|294474078|gb|ADE83467.1| putative glucose inhibited division protein A [Prevotella
           ruminicola 23]
          Length = 424

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 314 LPEEIQHQFIRTIPGLEKVNIIRP-----GYAIEYDYINPKELFPTLETKKISGLFLAGQ 368
           +      + +R +PG+E    + P     G +I Y  +  +     +    IS L  AG+
Sbjct: 265 MTSYYPVEKLRRLPGMENARYVDPCAGSKGNSIRYLSVAYR--SNAMTVDGISNLLCAGE 322

Query: 369 INGT-TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMF 427
            +G   G+ EA   G +AG N+AR +     +   +T +   ++    ++       R  
Sbjct: 323 KSGLFIGHTEAITTGTLAGHNAARLAAAKPLLTLPQTLAVGDLIAAANSAIKE----RHD 378

Query: 428 TSRAEYRISLRPDNADNRLTPI 449
           T     R +    N  NR+   
Sbjct: 379 TME---RFTFSGGNYFNRMKEK 397


>gi|104782659|ref|YP_609157.1| dihydrolipoamide dehydrogenase [Pseudomonas entomophila L48]
 gi|95111646|emb|CAK16367.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Pseudomonas entomophila L48]
          Length = 478

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG STA                A+GG 
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGFSTAC----IEKYTDAEGKLALGGT 48


>gi|18312835|ref|NP_559502.1| thioredoxin reductase (trxB) [Pyrobaculum aerophilum str. IM2]
 gi|18160322|gb|AAL63684.1| thioredoxin reductase (trxB) [Pyrobaculum aerophilum str. IM2]
          Length = 327

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++  YDVI++G G AG  AA   A+    T +I+   
Sbjct: 6  LMDVDYDVIIVGAGIAGLSAALYTARQRLKTLVISRDL 43


>gi|311694414|gb|ADP97287.1| dihydrolipoamide dehydrogenase [marine bacterium HP15]
          Length = 480

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIG G  G  AA  AA+LG  TA +
Sbjct: 1  MSDKYDVIVIGAGPGGYVAAIKAAQLGLKTACV 33


>gi|192361694|ref|YP_001981993.1| dihydrolipoamide dehydrogenase [Cellvibrio japonicus Ueda107]
 gi|190687859|gb|ACE85537.1| dihydrolipoamide dehydrogenase [Cellvibrio japonicus Ueda107]
          Length = 479

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV+VIG G AG  AA  AA+LG  TA I
Sbjct: 1  MSEKFDVVVIGSGPAGYVAAIRAAQLGLKTACI 33


>gi|126725085|ref|ZP_01740928.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Rhodobacterales bacterium HTCC2150]
 gi|126706249|gb|EBA05339.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Rhodobacterales bacterium HTCC2150]
          Length = 462

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YDVIVIG G  G  AA   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  NYDVIVIGAGPGGYVAAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHATHSLH 61

Query: 61 EID---ALDGLMGRV 72
          E        GL G+ 
Sbjct: 62 EAQHNFPAMGLKGKA 76


>gi|83647430|ref|YP_435865.1| dihydrolipoamide dehydrogenase [Hahella chejuensis KCTC 2396]
 gi|83635473|gb|ABC31440.1| dihydrolipoamide dehydrogenase [Hahella chejuensis KCTC 2396]
          Length = 477

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DVIVIG G  G  AA  AA+LG  TA +        + +  P  GG 
Sbjct: 1  MADKFDVIVIGAGPGGYVAAIRAAQLGLKTACV----EKWSNEAGKPVFGGT 48


>gi|308511507|ref|XP_003117936.1| hypothetical protein CRE_00621 [Caenorhabditis remanei]
 gi|308238582|gb|EFO82534.1| hypothetical protein CRE_00621 [Caenorhabditis remanei]
          Length = 399

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDV+V+G G  G   A    +LG  T L             N +    GK  + R 
Sbjct: 1  MTKHYDVVVVGAGIFGSCTAYHCQRLGMRTLL----LEQFNLGHSNGS--SHGKSRITRY 54

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
                 +  V D +  Q   L   +G  + 
Sbjct: 55 AHTDPEYVPLVGD-SYSQIEQLEKMRGEKLW 84


>gi|218282811|ref|ZP_03488969.1| hypothetical protein EUBIFOR_01555 [Eubacterium biforme DSM 3989]
 gi|218216340|gb|EEC89878.1| hypothetical protein EUBIFOR_01555 [Eubacterium biforme DSM 3989]
          Length = 435

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDV+VIGGG AG  +A  A + GA + LI
Sbjct: 15 MNNKYDVVVIGGGPAGLASAMAAKQNGAKSVLI 47


>gi|219666381|ref|YP_002456816.1| electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
 gi|219536641|gb|ACL18380.1| Electron-transferring-flavoprotein dehydrogenase
           [Desulfitobacterium hafniense DCB-2]
          Length = 430

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 25/154 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  +D IV+GGG AG   A + AK G    L+                GG    H + 
Sbjct: 1   MSDDRFDAIVVGGGIAGTVTAYLLAKEGLEVMLV----ERGNYSGSKNVTGGRIYSHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYR 104
                       E       +  + + + +     + K G   R      R   D+ L  
Sbjct: 57  KIMPNFAQEAPVERKITREKISLMTEESNVTLDFSSTKLGEQGRDSYSVLRGVFDQWLAT 116

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
            A +  +     +      V      +  +  I+
Sbjct: 117 KAEEAGVQIIPGIR-----VDDLILREGKVCGII 145


>gi|157413859|ref|YP_001484725.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
           9215]
 gi|157388434|gb|ABV51139.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 479

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +D+IVIG G+ G +AA  AA  G   A++   +   G+     C P+   L     VRE
Sbjct: 7   DFDLIVIGAGYGGFDAAKHAAGKGLRVAIVE-SSDMGGTCVNKGCVPSKALLAASGKVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL--D 118
           I            A         +   P       + +R          +L+ +ENL   
Sbjct: 66  I------------ADYEHLAKFGIHASPV------RFERSKIADHANNLVLNVRENLTKT 107

Query: 119 VIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           + +  V         E N    +  ++    +  C  +V+ TG+
Sbjct: 108 LKRSGVEIILGIGRIEGNQKVGVRDKNGIDKIFTCKNIVIATGS 151


>gi|225438215|ref|XP_002265132.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296090646|emb|CBI41045.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 59  DIIIVGAGVAGSALAHTLGKDGRRVHIIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 118

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   R+    +               +   M+ +  S  N+ +
Sbjct: 119 EEIDAQ-RVLGYALFKDGKNTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLSNVRM 177

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    +    ++ 
Sbjct: 178 EQGTVTSLLEENGTIKGVQYKTKAGQELKA 207


>gi|103486724|ref|YP_616285.1| dihydrolipoamide dehydrogenase [Sphingopyxis alaskensis RB2256]
 gi|98976801|gb|ABF52952.1| dihydrolipoamide dehydrogenase [Sphingopyxis alaskensis RB2256]
          Length = 465

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M + +YD+IV+G G  G  AA  AA+LG  TA++      +G +     C P    L   
Sbjct: 1   MADTNYDLIVLGSGPGGYVAAIRAAQLGMKTAIVE--RELLGGICLNWGCIPTKALLRSA 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   +        + A+ +     V+   +G A     +Q ++ +  L  + +I     
Sbjct: 59  EIYHYMQHAGAYGLKAAEISADIDAVVKRSRGVA-----SQLNKGVTGLMKKHKI----- 108

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
             V  GE       K  +          +    +++ TG   R +
Sbjct: 109 -TVHMGEGKLTAPGKLEVKGEKGT--ETLSAKNIIVATGARARDL 150


>gi|237723979|ref|ZP_04554460.1| NAD-utilizing dehydrogenase [Bacteroides sp. D4]
 gi|229437643|gb|EEO47720.1| NAD-utilizing dehydrogenase [Bacteroides dorei 5_1_36/D4]
          Length = 547

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVDSESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     EKN I+ I        +   V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDVY 254


>gi|212693882|ref|ZP_03302010.1| hypothetical protein BACDOR_03404 [Bacteroides dorei DSM 17855]
 gi|212663414|gb|EEB23988.1| hypothetical protein BACDOR_03404 [Bacteroides dorei DSM 17855]
          Length = 547

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVDSESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     EKN I+ I        +   V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDVY 254


>gi|322373533|ref|ZP_08048069.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
          C150]
 gi|321278575|gb|EFX55644.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus sp.
          C150]
          Length = 393

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +D IVIGGG AG  A   +A  G  T LI         +    A  G G+ ++     
Sbjct: 2  KHFDTIVIGGGPAGMMATIASAFYGQQTLLIEKNK----RLGKKLAGTGGGRCNVTNNGS 57

Query: 64 ALDGLMG 70
            D L G
Sbjct: 58 LDDLLAG 64


>gi|302337371|ref|YP_003802577.1| flavocytochrome C [Spirochaeta smaragdinae DSM 11293]
 gi|301634556|gb|ADK79983.1| flavocytochrome c [Spirochaeta smaragdinae DSM 11293]
          Length = 647

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           + SYD++V+GGG AG  A   AA  GA T L       +  +  N  I G
Sbjct: 165 DMSYDIVVVGGGFAGLAATHSAADSGAKTLL----IDKMPFVGGNSQING 210


>gi|291278630|ref|YP_003495465.1| L-aspartate oxidase [Deferribacter desulfuricans SSM1]
 gi|290753332|dbj|BAI79709.1| L-aspartate oxidase [Deferribacter desulfuricans SSM1]
          Length = 515

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 75/246 (30%), Gaps = 45/246 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG-------- 56
            YD +VIG G AG  AA   A+ G S ALIT   S++G  S   A GG+           
Sbjct: 3   QYDFLVIGSGAAGLRAAVGLAQHG-SVALIT--KSSVGEGSSEHAQGGVAVVLSDEDDIV 59

Query: 57  -HLVREIDALDGLMGRVA----------------------DAAGIQFRVLNVKKGPAVRG 93
            H    I A DGL  + A                      D  G              R 
Sbjct: 60  LHYEDTIVAGDGLCDKNAVMTLVDEGPHYIKELIGWGAKFDMVGDHLDFTREAAHSVNRI 119

Query: 94  PRTQADRELY--RLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSM-----I 145
                D   +    A++      +N+  I    V       N +  + + D +      I
Sbjct: 120 IHAHGDATGFEIVRALKEYSTKIKNITFIPDTFVIDLIVNNNEVFGVTVIDENSKEIYPI 179

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF--NSFMKFDF-DTGRLKTGTPA 202
               V+L TG   R        ++  G        +         + F  T     G PA
Sbjct: 180 FSKGVILATGGAGRIFKRTTNPEVATGDGIAIAFRAKATVKDLEFYQFHPTALHLKGAPA 239

Query: 203 RLDGKT 208
            L  ++
Sbjct: 240 FLLSES 245


>gi|237708507|ref|ZP_04538988.1| NAD-utilizing dehydrogenase [Bacteroides sp. 9_1_42FAA]
 gi|229457436|gb|EEO63157.1| NAD-utilizing dehydrogenase [Bacteroides sp. 9_1_42FAA]
          Length = 547

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVDSESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     EKN I+ I        +   V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFETRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDVY 254


>gi|224142069|ref|XP_002324381.1| sarcosine oxidase [Populus trichocarpa]
 gi|222865815|gb|EEF02946.1| sarcosine oxidase [Populus trichocarpa]
          Length = 411

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +DVIV+G G  G   A   AK G  T L+  
Sbjct: 5  SHHFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQ 38


>gi|153854651|ref|ZP_01995901.1| hypothetical protein DORLON_01897 [Dorea longicatena DSM 13814]
 gi|149752755|gb|EDM62686.1| hypothetical protein DORLON_01897 [Dorea longicatena DSM 13814]
          Length = 666

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +N+  +V+V+G G AG EAA  AA++G +  L+
Sbjct: 380 VNKPCNVVVVGAGTAGLEAACTAAEVGCNVTLL 412


>gi|33861854|ref|NP_893415.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640222|emb|CAE19757.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 479

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 31/166 (18%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLV 59
           N  +D+IVIG G+ G +AA  AA+ G   A+I       G+     C P+   L     V
Sbjct: 5   NFDFDLIVIGAGYGGFDAAKHAAEKGLKVAIIE-SGDMGGTCVNKGCVPSKALLAASGKV 63

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL- 117
           REI            A         +   P       + +R          + + +ENL 
Sbjct: 64  REI------------ANYEHLAKFGIHASPV------RFERSKIADHANNLVSNVRENLT 105

Query: 118 -DVIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
             + +  V         E N    +   +    +  C  +VL TG+
Sbjct: 106 KTLKRSGVEIILGFGRLEGNQKVGVRDNNGIDRIFTCKNIVLATGS 151


>gi|146276912|ref|YP_001167071.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17025]
 gi|145555153|gb|ABP69766.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17025]
          Length = 433

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+G G+ G  AA   A+ G S  L+       G+   N    G G+     E++A+ 
Sbjct: 38 DVCVVGAGYTGLSAALHLAERGYSVVLLEAHRVGFGASGRNGGQVGSGQRLEQDELEAMV 97

Query: 67 GL 68
          GL
Sbjct: 98 GL 99


>gi|300712147|ref|YP_003737961.1| P-hydroxybenzoate hydroxylase [Halalkalicoccus jeotgali B3]
 gi|299125830|gb|ADJ16169.1| P-hydroxybenzoate hydroxylase [Halalkalicoccus jeotgali B3]
          Length = 455

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  R  DV ++G G AGC A A  A+ G    ++  KT            G +  G  ++
Sbjct: 1   MSTREVDVAIVGAGTAGCYAGATIAEAGYDVLVLERKTEEEA--------GHIACGDALK 52

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGP----------AVRGPRTQADRELYRLAMQRE 110
             D   G + +      +    ++  +             V G     DR  Y  A+ R 
Sbjct: 53  GADEFPGAIPKSTLEPAMTNTEVDHGRFELPEHDTVLEIPVPGELAVIDRFEYGKAIIRG 112

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIV 138
                        V     ++  I+ + 
Sbjct: 113 AKEAGVEFSYDTVVQDVRQDEGRITGVR 140


>gi|227514386|ref|ZP_03944435.1| thioredoxin-disulfide reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260663151|ref|ZP_05864043.1| thioredoxin-disulfide reductase [Lactobacillus fermentum 28-3-CHN]
 gi|227087252|gb|EEI22564.1| thioredoxin-disulfide reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260552343|gb|EEX25394.1| thioredoxin-disulfide reductase [Lactobacillus fermentum 28-3-CHN]
 gi|299782894|gb|ADJ40892.1| Thioredoxin-disulfide reductase [Lactobacillus fermentum CECT 5716]
          Length = 313

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 46/169 (27%), Gaps = 42/169 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YDV+VIG G  G  AA  A++   S  L+       G    N A      G        
Sbjct: 8   NYDVVVIGAGPGGMTAAMYASRANLSVLLL--DRGIYGGNLNNTATIENYTGFKT----V 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
               + +       QF         A  G                            G V
Sbjct: 62  QGPELAQNMYDGATQF--------GATYGY---------------------------GTV 86

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                 ++   S+            VV+ TG+  R  +     +  +GR
Sbjct: 87  TALTVNEDGTKSVTTDMGDTFIAKAVVIATGSDQR-KLGAPGEQEYSGR 134


>gi|224121148|ref|XP_002330755.1| sarcosine oxidase [Populus trichocarpa]
 gi|222872557|gb|EEF09688.1| sarcosine oxidase [Populus trichocarpa]
          Length = 401

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +DVIV+G G  G   A   AK G  T L+  
Sbjct: 5  SHQFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQ 38


>gi|254525789|ref|ZP_05137841.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537213|gb|EEE39666.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Prochlorococcus marinus str. MIT 9202]
          Length = 479

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
            +D+IVIG G+ G +AA  AA  G   A++   +   G+     C P+   L     VRE
Sbjct: 7   DFDLIVIGAGYGGFDAAKHAAGKGLRVAIVE-SSDMGGTCVNKGCVPSKALLAASGKVRE 65

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL--D 118
           I            A         +   P       + +R          +L+ +ENL   
Sbjct: 66  I------------ADYEHLAKFGIHASPV------RFERSKIADHANNLVLNVRENLTKT 107

Query: 119 VIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
           + +  V         E N    +  ++    +  C  +V+ TG+
Sbjct: 108 LKRSGVEIILGIGRIEGNQKVGVRDKNGIDKVFTCKNIVIATGS 151


>gi|212697365|ref|ZP_03305493.1| hypothetical protein ANHYDRO_01935 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675557|gb|EEB35164.1| hypothetical protein ANHYDRO_01935 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 508

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 44/167 (26%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD++++G G +   AA   A+ G   A++                            D
Sbjct: 205 KNYDILIVGAGPSSATAAIYGARKGLKVAIVA---------------------------D 237

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG- 122
              G +    D       + N+   P   GP+       Y L++++++ +   +D+I+G 
Sbjct: 238 EFGGQVNETLD-------IENITGIPKTEGPK-------YMLSVKKQVENL-GVDIIEGV 282

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           +   F    +   +++++D + I   T++L TGT  R +   G+ K 
Sbjct: 283 KAVDFEKNDHEF-NLILEDGAKINSKTIILATGTRWRLLGIDGEEKF 328


>gi|313639411|gb|EFS04280.1| NADH oxidase [Listeria seeligeri FSL S4-171]
          Length = 589

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 310 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 340


>gi|315301588|ref|ZP_07872695.1| NADH oxidase [Listeria ivanovii FSL F6-596]
 gi|313630035|gb|EFR98061.1| NADH oxidase [Listeria ivanovii FSL F6-596]
          Length = 532

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 253 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 283


>gi|255022417|ref|ZP_05294403.1| hypothetical protein LmonocyFSL_00780 [Listeria monocytogenes FSL
           J1-208]
          Length = 554

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 275 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 305


>gi|118617748|ref|YP_906080.1| dihydrolipoamide dehydrogenase [Mycobacterium ulcerans Agy99]
 gi|118569858|gb|ABL04609.1| dihydrolipoamide dehydrogenase Lpd [Mycobacterium ulcerans Agy99]
          Length = 464

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G AG  AA  AA+LG +TA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPAGYVAAIRAAQLGLNTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G      G+ F
Sbjct: 63 TKDAKAFGISGEATFDYGVAF 83


>gi|88608170|ref|YP_506549.1| dihydrolipoamide dehydrogenase [Neorickettsia sennetsu str.
          Miyayama]
 gi|88600339|gb|ABD45807.1| dihydrolipoamide dehydrogenase [Neorickettsia sennetsu str.
          Miyayama]
          Length = 468

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPA 49
          M  + +DV+VIGGG AG   +  AA+LG   A +  + S  G+     C P+
Sbjct: 8  MSEKEFDVVVIGGGPAGYVCSIKAAQLGMKVACVEKRPSLGGTCLNEGCIPS 59


>gi|84500604|ref|ZP_00998853.1| hypothetical protein OB2597_11616 [Oceanicola batsensis HTCC2597]
 gi|84391557|gb|EAQ03889.1| hypothetical protein OB2597_11616 [Oceanicola batsensis HTCC2597]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 124/396 (31%), Gaps = 83/396 (20%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGG AG  AA   ++ G S  L   K     S+     + G    +L R+ +A D  
Sbjct: 5   VVIGGGPAGLMAAQEMSRAGLSVVLAEAKP----SVGRKLLMAGKSGLNLTRD-EAFDRF 59

Query: 69  MGRVADAAGIQFRVLNVKKGP-AVRGPRTQADRELYR----LAMQREILSQENLDVIQGE 123
           +G   + A    R +  + GP  VR       ++L+         R + +   L    G+
Sbjct: 60  LG-AYEEAAPHLRPMLERMGPETVRAWAEALGQDLFTGTTGRVFPRAMKASPLLRAWLGQ 118

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL- 182
           +                    +   T    TG    G+        P G     P  S+ 
Sbjct: 119 L----------------RGGGVEIRTRCRWTGWDGAGLTFDT----PGGPTTLHPEVSVL 158

Query: 183 ---FNSFMKFDFDTGRLKTGTPARLD----GKTIIWD-KTEKQFADERLIPFSFMTDKIT 234
                S+ +   D    +    A       G  + W  +   QF     +    +T    
Sbjct: 159 ALGGASWARLGSDGAWAEHFDIASFRPANIGIAVDWSDRMAPQFG--LPLKAVALTAGGR 216

Query: 235 NRQIECGITRTNLE------THRIIMENIKHSAIYSGDI-------KSYGPRYCPSIEDK 281
           + + EC IT   LE        R + ++   S   + DI       K    R   S+   
Sbjct: 217 SSRGECVITARGLEGAGIYALSRELRDHAPLSLDLTPDIPLDRLRHKLARRRRGDSLASH 276

Query: 282 IVRF-----GERNGHQIFLEPE-GLNTDVVY--PNGISTALPEEIQHQFIRTIPGLEKVN 333
           + R       +R     F  P       ++   P     ALP +   Q I T  GL    
Sbjct: 277 LRRTIRLDPAKRALLMEFGRPLPDDLAPLLKALPVRHHGALPLD---QAISTAGGL---- 329

Query: 334 IIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI 369
                          + L  TL  +   G F AG++
Sbjct: 330 -------------PFRALDETLMLRDRPGTFAAGEM 352


>gi|212638427|ref|YP_002314947.1| succinate dehydrogenase flavoprotein subunit [Anoxybacillus
           flavithermus WK1]
 gi|212559907|gb|ACJ32962.1| Succinate dehydrogenase, flavoprotein subunit [Anoxybacillus
           flavithermus WK1]
          Length = 586

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 105/613 (17%), Positives = 180/613 (29%), Gaps = 110/613 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAEAGVKVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLADQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D  + R       T   ++
Sbjct: 126 YAGATTGQQLLYALDEQVRRHEVAGLVTKYEGWEFLGAVLDDEQVCRGIVAQNLTTMEIK 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 AFPADAVIMATGGPGIIFGKS--TNSIINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           D++L   S        R      T  + +    + E                P Y   + 
Sbjct: 243 DDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYGNLVP 284

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------- 330
             I        H       G+N  ++VY + +S   P+E+  +    I   E        
Sbjct: 285 RDIAT--REIFHVCVDLKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMGEDPR 341

Query: 331 KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQ-------IN--GTTGYE 376
           KV + I P  A+ Y      ++  ++        I GLF AG+        N  G     
Sbjct: 342 KVPMKIFP--AVHYSMGGLWVDYDQMT------NIKGLFAAGECDFSMHGANRLGANSLL 393

Query: 377 EAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMIDDLTSK 418
            A   G+VAG  +                         +   +++  +  G     +  K
Sbjct: 394 SAIYGGMVAGPKAVEYMKGLEKSADAMPSSLYDRYLKQEEEKWAQIMAMDGTENAYVLHK 453

Query: 419 GVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRS 476
            + E      +   Y    L+ D     L      +      +   + A + ++   +  
Sbjct: 454 ELGEWMTDNVTVVRYNDKLLKTDEKIQELLERYKNININDTAKWSNQGASFTRQLYNMLQ 513

Query: 477 LLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIER 535
           L + + L +     S    +K +   R   E+L         + S  PD   F    ++ 
Sbjct: 514 LARVITLGAYNRNESRGAHYKPEFPERNDEEWLK------TTMASFTPDGPSFHYRDVDT 567

Query: 536 LQIESSYAAYTGR 548
             I+     YT +
Sbjct: 568 SLIKPRKRDYTKK 580


>gi|126459732|ref|YP_001056010.1| geranylgeranyl reductase [Pyrobaculum calidifontis JCM 11548]
 gi|126249453|gb|ABO08544.1| geranylgeranyl reductase [Pyrobaculum calidifontis JCM 11548]
          Length = 367

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YDV+V+G G AG  AA VA +LG    ++      +      P  GGL      R ++AL
Sbjct: 12 YDVVVVGAGPAGSTAAIVAGRLGLKAVVV----DRLQPPREKPCGGGLTP-RTQRLLNAL 66

Query: 66 D 66
           
Sbjct: 67 G 67


>gi|187920582|ref|YP_001889614.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
 gi|187719020|gb|ACD20243.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
          Length = 425

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-------CNPAIGGLGKGHLV 59
          DVIV+G G  G  AA   A+ GA   +      T+G  +       CN            
Sbjct: 27 DVIVVGAGITGSAAALALARKGARVVVCE--AGTVGQAASGRNGGMCNNGFAQDYASLSQ 84

Query: 60 R 60
          R
Sbjct: 85 R 85


>gi|86360868|ref|YP_472755.1| thioredoxin reductase (NADPH) protein [Rhizobium etli CFN 42]
 gi|86284970|gb|ABC94028.1| thioredoxin reductase (NADPH) protein [Rhizobium etli CFN 42]
          Length = 301

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          D I+IGGG AG  AA   A+   ST +    +S   ++  +  + G  +G   RE+ A
Sbjct: 3  DCIIIGGGPAGLTAAIYLARYHLSTTVFDDHSSRAATIPISHNLAGFPEGISGRELLA 60


>gi|328471630|gb|EGF42507.1| hypothetical protein VP10329_00695 [Vibrio parahaemolyticus
          10329]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVLDH 35


>gi|313620436|gb|EFR91824.1| NADH oxidase [Listeria innocua FSL S4-378]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|255026374|ref|ZP_05298360.1| hypothetical protein LmonocytFSL_08600 [Listeria monocytogenes FSL
           J2-003]
          Length = 469

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 190 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 220


>gi|188585220|ref|YP_001916765.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349907|gb|ACB84177.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 503

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD++VIGGG  G   A  AA+LG +TALI
Sbjct: 16 FSNQYDLVVIGGGPGGTACALKAARLGLTTALI 48


>gi|156972859|ref|YP_001443766.1| oxidoreductase [Vibrio harveyi ATCC BAA-1116]
 gi|156524453|gb|ABU69539.1| hypothetical protein VIBHAR_00536 [Vibrio harveyi ATCC BAA-1116]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVLDH 35


>gi|153839769|ref|ZP_01992436.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149746708|gb|EDM57696.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVLDH 35


>gi|153833806|ref|ZP_01986473.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148869864|gb|EDL68832.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVLDH 35


>gi|50956565|gb|AAT90812.1| conserved hypothetical protein [uncultured proteobacterium QS1]
          Length = 545

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          ++DVIV+G G  G  AAA  A  G    ++       G   C       GK
Sbjct: 14 TFDVIVVGAGIGGLTAAATLANRGKKVLVLDMHYEMGG---CATVFHRKGK 61


>gi|11499149|ref|NP_070383.1| thioredoxin reductase (trxB) [Archaeoglobus fulgidus DSM 4304]
 gi|2649006|gb|AAB89692.1| thioredoxin reductase (trxB) [Archaeoglobus fulgidus DSM 4304]
          Length = 300

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH-----KTSTIGSMSCNPAIGGLGKGHLVR 60
          YDV +IGGG AG  AA  +A+ G  T          + S    +   P   G G   L +
Sbjct: 2  YDVAIIGGGPAGLTAALYSARYGLKTVFFETVDPVSQLSLAAKIENYPGFEGSGMELLEK 61


>gi|28896853|ref|NP_796458.1| hypothetical protein VP0079 [Vibrio parahaemolyticus RIMD
          2210633]
 gi|260364679|ref|ZP_05777274.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877754|ref|ZP_05890109.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260895596|ref|ZP_05904092.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|260902620|ref|ZP_05911015.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|28805061|dbj|BAC58342.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
          2210633]
 gi|308088529|gb|EFO38224.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308089944|gb|EFO39639.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308109657|gb|EFO47197.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308112636|gb|EFO50176.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 397

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVLDH 35


>gi|163848823|ref|YP_001636867.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Chloroflexus aurantiacus J-10-fl]
 gi|222526776|ref|YP_002571247.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Chloroflexus sp. Y-400-fl]
 gi|163670112|gb|ABY36478.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Chloroflexus aurantiacus J-10-fl]
 gi|222450655|gb|ACM54921.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Chloroflexus sp. Y-400-fl]
          Length = 412

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          YD IVIG G AG  AA   A+ G    ++ 
Sbjct: 2  YDTIVIGAGLAGMMAAIGRAERGEKVLVLA 31


>gi|330835529|ref|YP_004410257.1| NADH:flavin oxidoreductase/NADH oxidase [Metallosphaera cuprina
           Ar-4]
 gi|329567668|gb|AEB95773.1| NADH:flavin oxidoreductase/NADH oxidase [Metallosphaera cuprina
           Ar-4]
          Length = 543

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           DVIVIGGG  G EA+ V AK G    L+      +G
Sbjct: 359 DVIVIGGGLMGLEASRVLAKRGFRVTLLEQS-DKLG 393


>gi|315281072|ref|ZP_07869789.1| NADH oxidase [Listeria marthii FSL S4-120]
 gi|313615281|gb|EFR88709.1| NADH oxidase [Listeria marthii FSL S4-120]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|312863326|ref|ZP_07723564.1| thioredoxin-disulfide reductase [Streptococcus vestibularis F0396]
 gi|311100862|gb|EFQ59067.1| thioredoxin-disulfide reductase [Streptococcus vestibularis F0396]
          Length = 306

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 58/204 (28%), Gaps = 56/204 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  AA+     A +                          E  A 
Sbjct: 2   YDTIVIGAGPAGMTAALYAARANLKVATL--------------------------EQGAP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS--QENLDVIQGE 123
            G M   +D       + N     ++ GP          + M   +     ENL    G 
Sbjct: 36  GGQMNNTSD-------IENYPGFESISGPEL-------SMKMFEPLEKLGVENLY---GI 78

Query: 124 VAGFN-----------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           V+G              E+    ++++   +  R   V        RGV +         
Sbjct: 79  VSGIEDKGNYKVVKTGDEEYQTKTVILATGAKHRHIGVSGEEEYNSRGVSYCAVCDGAFF 138

Query: 173 RMGDSPSNSLFNSFMKFDFDTGRL 196
           R  D       +S ++      R 
Sbjct: 139 RNQDLLVVGGGDSAVEEGIYLTRF 162


>gi|225572748|ref|ZP_03781503.1| hypothetical protein RUMHYD_00937 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039887|gb|EEG50133.1| hypothetical protein RUMHYD_00937 [Blautia hydrogenotrophica DSM
          10507]
          Length = 308

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  + YD+I++G G AG  AA  A + G  T L+   
Sbjct: 1  MDEKIYDLIIVGAGPAGLTAAIYALRAGLHTLLLEKN 37


>gi|170016284|ref|YP_001723006.1| thioredoxin-disulfide reductase [Leuconostoc citreum KM20]
 gi|295987483|ref|YP_003620428.1| thioredoxin reductase [Leuconostoc kimchii IMSNU 11154]
 gi|169804966|gb|ACA83582.1| Thioredoxin-disulfide reductase [Leuconostoc citreum KM20]
 gi|295831573|gb|ADG39459.1| thioredoxin reductase [Leuconostoc kimchii IMSNU 11154]
          Length = 309

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 42/167 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG G  G  A+  AA+     A+I                          +   
Sbjct: 3   EYDVIVIGAGPGGMTASLYAARANLKVAMI--------------------------DRGV 36

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             G M    D       + N    P ++GP      ++Y+  +   +        I G+V
Sbjct: 37  YGGQMNNTDD-------IENYPGFPTIKGPDLG--EKMYQNTVNAGVE------FIFGDV 81

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                + N    +   D+  +    V++ TG+  R +   G+ +   
Sbjct: 82  QEVTVDDNQYKHVKT-DSEDLVSKVVIIATGSNNRKLGIPGEKEFSG 127


>gi|167760350|ref|ZP_02432477.1| hypothetical protein CLOSCI_02724 [Clostridium scindens ATCC 35704]
 gi|167662023|gb|EDS06153.1| hypothetical protein CLOSCI_02724 [Clostridium scindens ATCC 35704]
          Length = 648

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 19/27 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +V+VIGGG AG EAA VAAK G    L
Sbjct: 382 NVLVIGGGPAGMEAAFVAAKRGHHVIL 408


>gi|254830526|ref|ZP_05235181.1| hypothetical protein Lmon1_04157 [Listeria monocytogenes 10403S]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|113952903|ref|YP_729788.1| glycerol dehydrogenase [Synechococcus sp. CC9311]
 gi|113880254|gb|ABI45212.1| glycerol dehydrogenase homolog [Synechococcus sp. CC9311]
          Length = 524

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M ++ +D++VIGGG +GC  A  A + G   AL+   
Sbjct: 1  MADQRFDLVVIGGGASGCSVAYEAVRRGLRVALLEGH 37


>gi|16125975|ref|NP_420539.1| pyruvate dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Caulobacter crescentus CB15]
 gi|221234742|ref|YP_002517178.1| dihydrolipoamide dehydrogenase [Caulobacter crescentus NA1000]
 gi|13423149|gb|AAK23707.1| pyruvate dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Caulobacter crescentus CB15]
 gi|220963914|gb|ACL95270.1| dihydrolipoamide dehydrogenase [Caulobacter crescentus NA1000]
          Length = 466

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
          ++  +DV+VIG G  G  AA  A++LG +TA+I      +G +     C P    L  G 
Sbjct: 1  MSTEFDVVVIGAGPGGYVAAIRASQLGLNTAIIE--RENLGGICLNWGCIPTKALLKSGE 58

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
          +  ++  L G    V  A+    +++   +G A
Sbjct: 59 VYEQLSHLGGYGLSVEKASFDFGKIIERSRGVA 91


>gi|47094715|ref|ZP_00232330.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 1/2a F6854]
 gi|254900285|ref|ZP_05260209.1| hypothetical protein LmonJ_10740 [Listeria monocytogenes J0161]
 gi|254911161|ref|ZP_05261173.1| NADH:flavin oxidoreductase [Listeria monocytogenes J2818]
 gi|254935489|ref|ZP_05267186.1| NADH:flavin oxidoreductase [Listeria monocytogenes F6900]
 gi|47016855|gb|EAL07773.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608066|gb|EEW20674.1| NADH:flavin oxidoreductase [Listeria monocytogenes F6900]
 gi|293589088|gb|EFF97422.1| NADH:flavin oxidoreductase [Listeria monocytogenes J2818]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|327472904|gb|EGF18331.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK408]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    + L
Sbjct: 4   FDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN-L 58

Query: 66  DGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQEN 116
           D LM      GR   +   QF   ++       G + + +   R        R I   E 
Sbjct: 59  DDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--IEA 116

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           L+    E+ G       I S+   D             C  +++TTG
Sbjct: 117 LEKKIAELGGTVITNTEIVSVKKSDGLFTVRSSDQAWTCQKLIVTTG 163


>gi|324005124|gb|EGB74343.1| FAD dependent oxidoreductase [Escherichia coli MS 57-2]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|320195283|gb|EFW69911.1| Invasion protein IbeA [Escherichia coli WV_060327]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|331660957|ref|ZP_08361889.1| invasion protein IbeA [Escherichia coli TA206]
 gi|315298328|gb|EFU57583.1| FAD dependent oxidoreductase [Escherichia coli MS 16-3]
 gi|331051999|gb|EGI24038.1| invasion protein IbeA [Escherichia coli TA206]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|331650460|ref|ZP_08351532.1| invasion protein IbeA [Escherichia coli M605]
 gi|330909775|gb|EGH38285.1| invasion protein IbeA [Escherichia coli AA86]
 gi|331040854|gb|EGI13012.1| invasion protein IbeA [Escherichia coli M605]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|306815478|ref|ZP_07449627.1| invasion protein IbeA [Escherichia coli NC101]
 gi|305851140|gb|EFM51595.1| invasion protein IbeA [Escherichia coli NC101]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|293369988|ref|ZP_06616555.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292634906|gb|EFF53428.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 550

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLVELGLRPIVIERGKDVRERKKDLAQINREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|170682712|ref|YP_001746779.1| invasion protein IbeA [Escherichia coli SMS-3-5]
 gi|170520430|gb|ACB18608.1| invasion protein IbeA [Escherichia coli SMS-3-5]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|52420923|emb|CAH55802.1| invasion protein IbeA [Escherichia coli]
 gi|222036073|emb|CAP78818.1| Invasion protein IbeA [Escherichia coli LF82]
 gi|312948957|gb|ADR29784.1| invasion protein IbeA [Escherichia coli O83:H1 str. NRG 857C]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|91781166|ref|YP_556373.1| putative FAD dependent oxidoreductase [Burkholderia xenovorans
          LB400]
 gi|91693826|gb|ABE37023.1| Putative FAD dependent oxidoreductase [Burkholderia xenovorans
          LB400]
          Length = 428

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           R+YD IV+GGG  GC  A  +A+ G    ++            N       +G   RE+
Sbjct: 6  TRNYDAIVVGGGIVGCATAYYSARAGLRVLVVEASNIAAQQSGRNLGFVRQ-QGRDFREL 64

Query: 63 DAL 65
          + +
Sbjct: 65 ELM 67


>gi|91213983|ref|YP_543969.1| invasion protein IbeA [Escherichia coli UTI89]
 gi|117626645|ref|YP_859968.1| invasion protein IbeA [Escherichia coli APEC O1]
 gi|32331157|gb|AAP80140.1| invasion protein IbeA [Escherichia coli]
 gi|91075557|gb|ABE10438.1| invasion protein IbeA [Escherichia coli UTI89]
 gi|115515769|gb|ABJ03844.1| invasion protein IbeA [Escherichia coli APEC O1]
 gi|202078774|gb|ACH96433.1| invasion protein IbeA [Escherichia coli]
 gi|294494137|gb|ADE92893.1| invasion protein IbeA [Escherichia coli IHE3034]
 gi|307629496|gb|ADN73800.1| invasion protein IbeA [Escherichia coli UM146]
          Length = 456

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINAERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|16799567|ref|NP_469835.1| hypothetical protein lin0492 [Listeria innocua Clip11262]
 gi|16412932|emb|CAC95724.1| lin0492 [Listeria innocua Clip11262]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|94984461|ref|YP_603825.1| dihydrolipoamide dehydrogenase [Deinococcus geothermalis DSM 11300]
 gi|94554742|gb|ABF44656.1| Dihydrolipoamide dehydrogenase [Deinococcus geothermalis DSM 11300]
          Length = 468

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSM-------SCNPAIGGLGKGH 57
           YDV+VIGGG AG  AA  AA+LG  TA +     +   S+        C P+   L    
Sbjct: 4   YDVLVIGGGPAGYVAAIRAAQLGFKTACVDAFTRNGKASLGGTCLNVGCIPSKALLDSSE 63

Query: 58  LVREIDALDGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               I    G  G   D A     ++L  K+        +  D+    +A    +  +  
Sbjct: 64  RFEMIKHEAGEHGIQVDGATVDVAKMLGRKE--------SVVDKLTGGIAY---LFKKNK 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +  I G   G    +   S IV    + +R   V++ TG+  R
Sbjct: 113 VTSIHG--LGRLVRREGDSWIVDAAGTEVRAKNVIVATGSTPR 153


>gi|294993655|ref|ZP_06799346.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          210]
 gi|326905377|gb|EGE52310.1| dehydrogenase [Mycobacterium tuberculosis W-148]
          Length = 563

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + +DV+V+G G AG  AA VAA  G ST ++
Sbjct: 1  MTVQEFDVVVVGSGAAGMVAALVAAHRGLSTVVV 34


>gi|265999129|ref|ZP_06111573.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 2 str.
           63/9]
 gi|263092351|gb|EEZ16604.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410658|gb|ADZ67722.1| Hydroxyacylglutathione hydrolase [Brucella melitensis M28]
 gi|326553950|gb|ADZ88589.1| Hydroxyacylglutathione hydrolase [Brucella melitensis M5-90]
          Length = 291

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|260568203|ref|ZP_05838672.1| hydroxyacylglutathione hydrolase [Brucella suis bv. 4 str. 40]
 gi|260154868|gb|EEW89949.1| hydroxyacylglutathione hydrolase [Brucella suis bv. 4 str. 40]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|255525215|ref|ZP_05392157.1| HI0933 family protein [Clostridium carboxidivorans P7]
 gi|255511078|gb|EET87376.1| HI0933 family protein [Clostridium carboxidivorans P7]
          Length = 407

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIVIGGG AG  AA  A+K   +T L          +     I G G+ ++    D  D 
Sbjct: 4   VIVIGGGPAGMMAAIAASKK-HNTIL----IEKNEKLGKKLYITGKGRCNVTNAKDINDF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   + F      +    RG R   ++D+    ++   + L
Sbjct: 59  FDYIPGNSTFLYSALYTFTNEDTMNFFKNLDVELKVERGDRVFPKSDKSSDIISALEKAL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+D+     +  F  E NII+++ ++D S I+    VL TG
Sbjct: 119 RKNNVDIRLNTKIKKFLFENNIINAVQLEDGSTIKGDDFVLCTG 162


>gi|254712320|ref|ZP_05174131.1| hypothetical protein BcetM6_02864 [Brucella ceti M644/93/1]
 gi|254715391|ref|ZP_05177202.1| hypothetical protein BcetM_02879 [Brucella ceti M13/05/1]
 gi|261217120|ref|ZP_05931401.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261319991|ref|ZP_05959188.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922209|gb|EEX88777.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292681|gb|EEX96177.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|224500415|ref|ZP_03668764.1| hypothetical protein LmonF1_12414 [Listeria monocytogenes Finland
           1988]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|161620563|ref|YP_001594449.1| hypothetical protein BCAN_B0499 [Brucella canis ATCC 23365]
 gi|161337374|gb|ABX63678.1| HI0933 family protein [Brucella canis ATCC 23365]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|23500246|ref|NP_699686.1| hypothetical protein BRA0499 [Brucella suis 1330]
 gi|163844660|ref|YP_001622315.1| hypothetical protein BSUIS_B0497 [Brucella suis ATCC 23445]
 gi|254702882|ref|ZP_05164710.1| hypothetical protein Bsuib36_02894 [Brucella suis bv. 3 str. 686]
 gi|261753486|ref|ZP_05997195.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23463851|gb|AAN33691.1| conserved hypothetical protein [Brucella suis 1330]
 gi|163675383|gb|ABY39493.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|261743239|gb|EEY31165.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|16802532|ref|NP_464017.1| hypothetical protein lmo0489 [Listeria monocytogenes EGD-e]
 gi|224502210|ref|ZP_03670517.1| hypothetical protein LmonFR_06767 [Listeria monocytogenes FSL
           R2-561]
 gi|284800764|ref|YP_003412629.1| hypothetical protein LM5578_0512 [Listeria monocytogenes 08-5578]
 gi|284993950|ref|YP_003415718.1| hypothetical protein LM5923_0511 [Listeria monocytogenes 08-5923]
 gi|16409865|emb|CAC98568.1| lmo0489 [Listeria monocytogenes EGD-e]
 gi|284056326|gb|ADB67267.1| hypothetical protein LM5578_0512 [Listeria monocytogenes 08-5578]
 gi|284059417|gb|ADB70356.1| hypothetical protein LM5923_0511 [Listeria monocytogenes 08-5923]
          Length = 664

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|15610673|ref|NP_218054.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          H37Rv]
 gi|31794713|ref|NP_857206.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium bovis
          AF2122/97]
 gi|121639456|ref|YP_979680.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148663400|ref|YP_001284923.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          H37Ra]
 gi|148824743|ref|YP_001289497.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          F11]
 gi|167969153|ref|ZP_02551430.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          H37Ra]
 gi|215405584|ref|ZP_03417765.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          02_1987]
 gi|215413458|ref|ZP_03422135.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          94_M4241A]
 gi|215429038|ref|ZP_03426957.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          T92]
 gi|215432509|ref|ZP_03430428.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          EAS054]
 gi|219559613|ref|ZP_03538689.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          T17]
 gi|224991953|ref|YP_002646642.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|254552644|ref|ZP_05143091.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|260184453|ref|ZP_05761927.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          CPHL_A]
 gi|260198578|ref|ZP_05766069.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          T46]
 gi|260202722|ref|ZP_05770213.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          K85]
 gi|289440966|ref|ZP_06430710.1| dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289445129|ref|ZP_06434873.1| dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289555802|ref|ZP_06445012.1| dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289571778|ref|ZP_06452005.1| dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289572189|ref|ZP_06452416.1| dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289747374|ref|ZP_06506752.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          02_1987]
 gi|289752250|ref|ZP_06511628.1| dehydrogenase [Mycobacterium tuberculosis T92]
 gi|289755666|ref|ZP_06515044.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          EAS054]
 gi|297636209|ref|ZP_06953989.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          KZN 4207]
 gi|297733203|ref|ZP_06962321.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          KZN R506]
 gi|298527015|ref|ZP_07014424.1| hypothetical dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|313660533|ref|ZP_07817413.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          KZN V2475]
 gi|81345744|sp|P71864|3O1D1_MYCTU RecName: Full=3-oxosteroid 1-dehydrogenase; AltName:
          Full=3-keto-Delta(4)-steroid Delta(1)-dehydrogenase;
          Short=KSDD; AltName: Full=3-oxo-Delta(4)-steroid
          1-dehydrogenase; Short=KSTD
 gi|1666123|emb|CAB05041.1| PROBABLE DEHYDROGENASE [Mycobacterium tuberculosis H37Rv]
 gi|31620310|emb|CAD95753.1| PROBABLE DEHYDROGENASE [Mycobacterium bovis AF2122/97]
 gi|121495104|emb|CAL73590.1| Probable dehydrogenase [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148507552|gb|ABQ75361.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          H37Ra]
 gi|148723270|gb|ABR07895.1| hypothetical dehydrogenase [Mycobacterium tuberculosis F11]
 gi|224775068|dbj|BAH27874.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289413885|gb|EFD11125.1| dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289418087|gb|EFD15288.1| dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289440434|gb|EFD22927.1| dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289536620|gb|EFD41198.1| dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289545532|gb|EFD49180.1| dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289687902|gb|EFD55390.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          02_1987]
 gi|289692837|gb|EFD60266.1| dehydrogenase [Mycobacterium tuberculosis T92]
 gi|289696253|gb|EFD63682.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          EAS054]
 gi|298496809|gb|EFI32103.1| hypothetical dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|328460309|gb|AEB05732.1| dehydrogenase [Mycobacterium tuberculosis KZN 4207]
          Length = 563

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + +DV+V+G G AG  AA VAA  G ST ++
Sbjct: 1  MTVQEFDVVVVGSGAAGMVAALVAAHRGLSTVVV 34


>gi|17989116|ref|NP_541749.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 1 str.
           16M]
 gi|62317637|ref|YP_223490.1| hypothetical protein BruAb2_0723 [Brucella abortus bv. 1 str.
           9-941]
 gi|83269620|ref|YP_418911.1| flavin-containing monooxygenase FMO [Brucella melitensis biovar
           Abortus 2308]
 gi|189022888|ref|YP_001932629.1| Hydroxyacylglutathione hydrolase [Brucella abortus S19]
 gi|225628934|ref|ZP_03786968.1| hydroxyacylglutathione hydrolase [Brucella ceti str. Cudo]
 gi|237817184|ref|ZP_04596176.1| hydroxyacylglutathione hydrolase [Brucella abortus str. 2308 A]
 gi|254691133|ref|ZP_05154387.1| hypothetical protein Babob68_13473 [Brucella abortus bv. 6 str.
           870]
 gi|254698917|ref|ZP_05160745.1| hypothetical protein Babob28_14779 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705995|ref|ZP_05167823.1| hypothetical protein BpinM_03068 [Brucella pinnipedialis
           M163/99/10]
 gi|254711705|ref|ZP_05173516.1| hypothetical protein BpinB_15934 [Brucella pinnipedialis B2/94]
 gi|254732364|ref|ZP_05190942.1| hypothetical protein Babob42_14569 [Brucella abortus bv. 4 str.
           292]
 gi|256015279|ref|YP_003105288.1| hypothetical protein BMI_II494 [Brucella microti CCM 4915]
 gi|256029662|ref|ZP_05443276.1| hypothetical protein BpinM2_03223 [Brucella pinnipedialis
           M292/94/1]
 gi|256043393|ref|ZP_05446326.1| hypothetical protein Bmelb1R_02834 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111597|ref|ZP_05452592.1| hypothetical protein Bmelb3E_03043 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157812|ref|ZP_05455730.1| hypothetical protein BcetM4_03023 [Brucella ceti M490/95/1]
 gi|256253224|ref|ZP_05458760.1| hypothetical protein BcetB_02779 [Brucella ceti B1/94]
 gi|256256320|ref|ZP_05461856.1| hypothetical protein Babob9C_02923 [Brucella abortus bv. 9 str.
           C68]
 gi|260167250|ref|ZP_05754061.1| hypothetical protein BruF5_02489 [Brucella sp. F5/99]
 gi|260544870|ref|ZP_05820691.1| hydroxyacylglutathione hydrolase [Brucella abortus NCTC 8038]
 gi|260564599|ref|ZP_05835084.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 1 str.
           16M]
 gi|260756733|ref|ZP_05869081.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760163|ref|ZP_05872511.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763401|ref|ZP_05875733.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882548|ref|ZP_05894162.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261220334|ref|ZP_05934615.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313431|ref|ZP_05952628.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261319331|ref|ZP_05958528.1| hypothetical protein BAHG_02427 [Brucella pinnipedialis B2/94]
 gi|261756655|ref|ZP_06000364.1| hydroxyacylglutathione hydrolase [Brucella sp. F5/99]
 gi|265986668|ref|ZP_06099225.1| hypothetical protein BALG_02479 [Brucella pinnipedialis M292/94/1]
 gi|265989816|ref|ZP_06102373.1| hypothetical protein BAMG_01812 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993075|ref|ZP_06105632.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996319|ref|ZP_06108876.1| hypothetical protein BAPG_02112 [Brucella ceti M490/95/1]
 gi|297249679|ref|ZP_06933380.1| hydroxyacylglutathione hydrolase [Brucella abortus bv. 5 str.
           B3196]
 gi|17984964|gb|AAL54013.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 1 str.
           16M]
 gi|62197830|gb|AAX76129.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939894|emb|CAJ12905.1| Flavin-containing monooxygenase FMO:Pyridine nucleotide-disulphide
           oxidoreductase, class I:FAD-dependent pyridine
           nucleotide- [Brucella melitensis biovar Abortus 2308]
 gi|189021462|gb|ACD74183.1| Hydroxyacylglutathione hydrolase [Brucella abortus S19]
 gi|225616780|gb|EEH13828.1| hydroxyacylglutathione hydrolase [Brucella ceti str. Cudo]
 gi|237787997|gb|EEP62213.1| hydroxyacylglutathione hydrolase [Brucella abortus str. 2308 A]
 gi|255997939|gb|ACU49626.1| hypothetical protein BMI_II494 [Brucella microti CCM 4915]
 gi|260098141|gb|EEW82015.1| hydroxyacylglutathione hydrolase [Brucella abortus NCTC 8038]
 gi|260152242|gb|EEW87335.1| hydroxyacylglutathione hydrolase [Brucella melitensis bv. 1 str.
           16M]
 gi|260670481|gb|EEX57421.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673822|gb|EEX60643.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676841|gb|EEX63662.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872076|gb|EEX79145.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260918918|gb|EEX85571.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261298554|gb|EEY02051.1| hypothetical protein BAHG_02427 [Brucella pinnipedialis B2/94]
 gi|261302457|gb|EEY05954.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736639|gb|EEY24635.1| hydroxyacylglutathione hydrolase [Brucella sp. F5/99]
 gi|262550616|gb|EEZ06777.1| hypothetical protein BAPG_02112 [Brucella ceti M490/95/1]
 gi|262763945|gb|EEZ09977.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000485|gb|EEZ13175.1| hypothetical protein BAMG_01812 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|264658865|gb|EEZ29126.1| hypothetical protein BALG_02479 [Brucella pinnipedialis M292/94/1]
 gi|297173548|gb|EFH32912.1| hydroxyacylglutathione hydrolase [Brucella abortus bv. 5 str.
           B3196]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|85705618|ref|ZP_01036716.1| mercuric reductase [Roseovarius sp. 217]
 gi|85670043|gb|EAQ24906.1| mercuric reductase [Roseovarius sp. 217]
          Length = 478

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 14/152 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++VIG G AG  AA  AA+ G   ALI H   TIG    N  +G +    ++R  +A
Sbjct: 15  DYDLVVIGAGSAGFSAAITAAEGGKRVALIGH--GTIGGTCVN--VGCVPSKTMIRAAEA 70

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           + G        A  +F  LN +   A       A  +L     Q+      +L      V
Sbjct: 71  VYGA------WAACRFPGLNGEAQVADWAALVAAKDDLVARLRQK---KYADLLPGYDSV 121

Query: 125 AGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTG 155
              +      +   V  D  MI  S V++ TG
Sbjct: 122 TYIDEGPARLVPGGVEIDGRMITASKVIVATG 153


>gi|15843149|ref|NP_338186.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          CDC1551]
 gi|253800578|ref|YP_003033579.1| dehydrogenase [Mycobacterium tuberculosis KZN 1435]
 gi|254234114|ref|ZP_04927438.1| hypothetical protein TBCG_03466 [Mycobacterium tuberculosis C]
 gi|254366102|ref|ZP_04982146.1| hypothetical dehydrogenase [Mycobacterium tuberculosis str.
          Haarlem]
 gi|308232496|ref|ZP_07416226.2| dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|308369158|ref|ZP_07416756.2| dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|308371383|ref|ZP_07424764.2| dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|308372577|ref|ZP_07429129.2| dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|308372671|ref|ZP_07429433.2| dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|308373945|ref|ZP_07434218.2| dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|308374913|ref|ZP_07442043.2| dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|308376160|ref|ZP_07437832.2| dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|308378367|ref|ZP_07482328.2| dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|308379542|ref|ZP_07486668.2| dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|308380729|ref|ZP_07490887.2| dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|308406190|ref|ZP_07495442.2| dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|75522516|sp|Q7D5C1|3O1D2_MYCTU RecName: Full=3-oxosteroid 1-dehydrogenase; AltName:
          Full=3-keto-Delta(4)-steroid Delta(1)-dehydrogenase;
          Short=KSDD; AltName: Full=3-oxo-Delta(4)-steroid
          1-dehydrogenase; Short=KSTD
 gi|13883499|gb|AAK48000.1| 3-ketosteroid-delta-1-dehydrogenase, putative [Mycobacterium
          tuberculosis CDC1551]
 gi|124603782|gb|EAY61745.1| hypothetical protein TBCG_03466 [Mycobacterium tuberculosis C]
 gi|134151614|gb|EBA43659.1| hypothetical dehydrogenase [Mycobacterium tuberculosis str.
          Haarlem]
 gi|253322081|gb|ACT26684.1| dehydrogenase [Mycobacterium tuberculosis KZN 1435]
 gi|308213764|gb|EFO73163.1| dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|308328519|gb|EFP17370.1| dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|308328932|gb|EFP17783.1| dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|308332754|gb|EFP21605.1| dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|308340247|gb|EFP29098.1| dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|308343586|gb|EFP32437.1| dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|308348053|gb|EFP36904.1| dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|308351976|gb|EFP40827.1| dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|308352762|gb|EFP41613.1| dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|308356612|gb|EFP45463.1| dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|308360568|gb|EFP49419.1| dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|308364215|gb|EFP53066.1| dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|323717731|gb|EGB26929.1| dehydrogenase [Mycobacterium tuberculosis CDC1551A]
          Length = 566

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + +DV+V+G G AG  AA VAA  G ST ++
Sbjct: 4  MTVQEFDVVVVGSGAAGMVAALVAAHRGLSTVVV 37


>gi|149183299|ref|ZP_01861740.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp. SG-1]
 gi|148848992|gb|EDL63201.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp. SG-1]
          Length = 586

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 101/599 (16%), Positives = 179/599 (29%), Gaps = 125/599 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ GA   L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAEAGAPVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMTEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTG 155
                    +   +  Q    V + EVAG     E      +++ D  + R         
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRHEVAGLVNKYEGWEFLGVIIDDEGVARGIVAQDLKT 181

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
             ++       +    G       +   NS +        +        +G+ I    T 
Sbjct: 182 MEIKSFPADAVIMATGGPGIIFGKS--TNSVINTGSAASIVYQQGAYYANGEFIQIHPTA 239

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
               D++L   S        R      T  + +    + E                P Y 
Sbjct: 240 I-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYG 280

Query: 276 PSIEDKIVRFGERNGHQIFLEPE-GLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE--- 330
             +   I     R    + +  + G+N  ++VY + +S   P+E+  +    I   E   
Sbjct: 281 NLVPRDI---ATREIFDVCVNQKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFM 336

Query: 331 -----KVNI-IRPGYAIEYDY----INPKELFPTLETKKISGLFLAGQIN---------G 371
                KV + I P  A+ Y      ++  ++        I GLF AG+ +         G
Sbjct: 337 GDDPRKVPMKIFP--AVHYSMGGLWVDYDQMT------NIPGLFAAGECDYSQHGGNRLG 388

Query: 372 TTGYEEAAAQGLVAGINSARKSNK------------------LDCICFSRTDSYIGVMID 413
                 A   G+VAG N+ +  N                    +   ++   S  G    
Sbjct: 389 ANSLLSAIFGGMVAGPNAIKYMNGLEKSVEELPSSLFERYVQQEEEKWNEIISMDGTENA 448

Query: 414 DLTSKGVLEPYRMFTSRAEYRISLRP-DNADNRLTPIGMKLGCIGERRQK-RFAKYIQEY 471
            +  K + E      +   Y   L+  DN    L      +     ++   + A + ++ 
Sbjct: 449 YVIHKELGEWMTDNVTVVRYNDKLKETDNKILELMERYKNININDTQKWSNQGAMFTRQL 508

Query: 472 NFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLS-----------YPDFSIQNL 518
             +  L + + + +     S    +K D   R   E+L             P+F  + +
Sbjct: 509 GNMLQLARVITIGALNRDESRGAHYKPDFPDRNDEEYLKTTMAKYNAETNTPEFHYEEV 567


>gi|119503178|ref|ZP_01625262.1| dihydrolipoamide dehydrogenase [marine gamma proteobacterium
          HTCC2080]
 gi|119460824|gb|EAW41915.1| dihydrolipoamide dehydrogenase [marine gamma proteobacterium
          HTCC2080]
          Length = 401

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYDVIVIG G AG   A   A+LG   A++       G     P +GG 
Sbjct: 1  MTASYDVIVIGSGPAGYVCAIRCAQLGKKVAVVEQWADDKG----KPVLGGT 48


>gi|116871880|ref|YP_848661.1| NADH:flavin oxidoreductase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740758|emb|CAK19878.1| NADH:flavin oxidoreductase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 664

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|282856526|ref|ZP_06265801.1| bifunctional thioredoxin reductase/thioredoxin [Pyramidobacter
           piscolens W5455]
 gi|282585647|gb|EFB90940.1| bifunctional thioredoxin reductase/thioredoxin [Pyramidobacter
           piscolens W5455]
          Length = 548

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 17/173 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI++GGG AG  AA   A+      ++       G      +      G        L
Sbjct: 9   YDVIIVGGGPAGLTAALYLARACYRVLVVE--KEKFGGQITITSEVVNYPGVERASGAEL 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-- 123
              M R A++ G +F +  V       G     D  + ++A  R +     L V  G   
Sbjct: 67  TEKMRRQAESFGAEFLLAEVT------GIDAGGD--VRKVATSRGVFECFGLLVATGAHP 118

Query: 124 -----VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                    +   + ++     D        V +  G F      +   K  +
Sbjct: 119 RTVGFEGELDFRGHGVAYCATCDGEFFAGKPVFVVGGGFAAAEESVFLTKYAS 171


>gi|269959457|ref|ZP_06173840.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835894|gb|EEZ89970.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 397

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++ +DV+VIG G AG   AA A K G +  ++ H
Sbjct: 1  MSKKFDVVVIGAGAAGLMCAAEAGKRGRNVLVLDH 35


>gi|238022448|ref|ZP_04602874.1| hypothetical protein GCWU000324_02356 [Kingella oralis ATCC
          51147]
 gi|237867062|gb|EEP68104.1| hypothetical protein GCWU000324_02356 [Kingella oralis ATCC
          51147]
          Length = 476

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++S+DV VIG G  G  AA  AA+LG  T  I    +  G     PA+GG 
Sbjct: 1  MSQSFDVAVIGAGPGGYIAAIRAAQLGFKTVCIDAGKNKAGDA---PALGGT 49


>gi|227872932|ref|ZP_03991234.1| dihydrolipoyl dehydrogenase [Oribacterium sinus F0268]
 gi|227841218|gb|EEJ51546.1| dihydrolipoyl dehydrogenase [Oribacterium sinus F0268]
          Length = 465

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  AA  +AKLG  TA++      +G       C P    +    L R
Sbjct: 2  SYDVIIIGAGPGGYVAALKSAKLGFKTAVVE--KDRVGGTCLNRGCIPTKAMVHATELYR 59

Query: 61 EID 63
          E+ 
Sbjct: 60 EMQ 62


>gi|328869540|gb|EGG17918.1| hypothetical protein DFA_08919 [Dictyostelium fasciculatum]
          Length = 1450

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 4/145 (2%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K   E  R+   R E          + RL  I ++   + + R ++     +     + 
Sbjct: 630 QKEKDEKERLENIRLENERLENERIENERLEKIRLENERLEKERLEKERLEKERLE--KE 687

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE-- 534
            L++  + ++ L    I  ++  K R   E +       + L     +  +     IE  
Sbjct: 688 RLENERIENERLEKERIENERLEKVRLEKEHIENERLEKERLDKERIEKERLEKEHIENQ 747

Query: 535 RLQIESSYAAYTGRQMIEAKEIKFE 559
           RL+ E         + +E + ++ E
Sbjct: 748 RLETERLEKERIENERLEKERLEKE 772



 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 16/165 (9%)

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R+   R E     +    + RL    ++   I   R ++     +     R     +++ 
Sbjct: 728 RLDKERIEKERLEKEHIENQRLETERLEKERIENERLEKERLEKERIEKERLEKERIENE 787

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
            L  + L    I  ++  K R   E +       + L     +  +      ER++ E  
Sbjct: 788 RLNKERLEKERIENERLNKERLEKERIENERIETERLEKEKLEKERLE---KERIENERL 844

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSI 586
                 ++ +E + ++ E  + +        +  L    KEKL  
Sbjct: 845 EKERLEKERLEKERLEKEHSQRV-------EVERL---EKEKLQK 879



 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 417  SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR- 475
             K  LE  R+   R E     +      R+    ++   + ++R +      +     + 
Sbjct: 930  EKEKLEKERLEKERLEKEKLEKERIEKERIEKERIEKELLEKQRLETERLDKERLEKEKL 989

Query: 476  --SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVI 533
                ++   + ++ L    I  ++  K R   E +       + L   C +  +      
Sbjct: 990  EKERIEKERIENERLEKERIEKERLEKERLEKERIENERLEKEKLEKECLEKERLE---K 1046

Query: 534  ERLQIESSYAAYTGRQMIEAKEIKFE 559
            ER++ E        ++ +E + ++ E
Sbjct: 1047 ERIETERLEKERIEKERLEKERLEKE 1072



 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +    + RL  + ++   I   R ++     +     + 
Sbjct: 680 EKERLEKERLENERIENERLEKERIENERLEKVRLEKEHIENERLEKERLDKERIE--KE 737

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L+   + ++ L +  +  ++    R   E L       + L               ER+
Sbjct: 738 RLEKEHIENQRLETERLEKERIENERLEKERLEKERIEKERLEK-------------ERI 784

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILK 588
           + E        ++ IE + +  E      +  +   +     E KEKL   +
Sbjct: 785 ENERLNKERLEKERIENERLNKERLEK--ERIENERIETERLE-KEKLEKER 833



 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 18/172 (10%)

Query: 425  RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL---RSLLKSL 481
            R+   R E     +      RL    ++   + + R ++     +        +  L++ 
Sbjct: 918  RIENIRIENERLEKEKLEKERLEKERLEKEKLEKERIEKERIEKERIEKELLEKQRLETE 977

Query: 482  VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
             L  + L    +  ++  K R   E L       + L     +  +  +   ERL+ E  
Sbjct: 978  RLDKERLEKEKLEKERIEKERIENERLEKERIEKERLEKERLEKERIEN---ERLEKEKL 1034

Query: 542  YAAYTGRQMIEAKEI--KFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFN 591
                  ++ +E + I  +  EK  I K+           E KE+L   +   
Sbjct: 1035 EKECLEKERLEKERIETERLEKERIEKE---------RLE-KERLEKERLET 1076



 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +   + IQ+    +  L+++ L ++ L +  I  ++  K R   E L       + L   
Sbjct: 623 RIEREKIQKEKDEKERLENIRLENERLENERIENERLEKIRLENERLEKERLEKERLEKE 682

Query: 522 CPDARKFSSL-------VIERLQIESSYAAYTGRQMIEAKEIKFE 559
             +  +  +          ER++ E        ++ IE + ++ E
Sbjct: 683 RLEKERLENERIENERLEKERIENERLEKVRLEKEHIENERLEKE 727


>gi|317402853|gb|EFV83395.1| secreted oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 376

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA---IGGLGKGHLVR 60
           + +DV+V+G G  G   A  AAK G S A+I       G+   N     + G   G ++ 
Sbjct: 2   KKFDVVVVGAGMLGIAHAWAAAKRGLSVAVIERSRQAHGATIRNFGQVIVTGQAPGMMLS 61

Query: 61  EIDALDGLMGRVADAAGIQFR-----VLNVKKGPAVRGP---RTQADRELYRLAM 107
                  L   +A  AG   R     VL    G A       RT+  +E YR  +
Sbjct: 62  HAQQARELWLDLASQAGFHVRANGALVLARDAGEADVLDEFARTRLQQEGYRAEL 116


>gi|317497530|ref|ZP_07955849.1| HI0933-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895213|gb|EFV17376.1| HI0933-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 405

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 118/407 (28%), Gaps = 72/407 (17%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REIDALDGLMGRVAD----- 74
             AAK G   +L          +     I G G+ ++    EI+ L   +    +     
Sbjct: 17  YQAAKCGNDVSLY----EKNEKLGKKIFITGKGRCNVTNACEIEELLDHVVTNKEFLYSG 72

Query: 75  ---AAGIQFRVLNVKKGPAVRGPRTQ-----ADRELYRLAMQREILSQENLDV-IQGEVA 125
                      L  + G  ++  R       +D     +A  +  L +EN+D+     V 
Sbjct: 73  FYSFTNDAMMELLEELGCPLKVERGNRVFPVSDHSSDVIAALQRGLRKENVDIYFNTTVK 132

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDSPSNS 181
               E  I++ + +     ++   VV+ TG                   AG      + +
Sbjct: 133 KILIEDGIVTGVRLASGDTVKADKVVVATGGMSYQATGSTGDGYDFARKAGHKVTKLTPA 192

Query: 182 L--FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
           L  F     +      L     A +   T    K  + F +     F      +      
Sbjct: 193 LVPFEIKEDYCKQLMGLSLRNVAVIM--TADGKKIYEDFGEMLFTHFGISGPVVL--SAS 248

Query: 240 CGIT-RTNLETHRII----MENIKHSAIYSGD----------IKSYGPRYCPSIEDKIVR 284
             I      E   II      N +                  + S        +   ++ 
Sbjct: 249 SYIGKYQGKELKFIIDLKPALNKEQLDHRVLKDFNKTLNKDFVNSLDHLLPKKLIPVMIE 308

Query: 285 FGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344
                 H+   E         +      +L + ++      + G ++  I + G  ++  
Sbjct: 309 LSGIPEHKKVNE-ITKKERERFV-----SLLKHLELTITG-VRGFKEAIITQGGVNVKE- 360

Query: 345 YINPKELFPTLETKKISGLFLAG--------------QINGTTGYEE 377
            I+P     T+E+KKI GL+ AG              QI  +TGY  
Sbjct: 361 -IDPG----TMESKKIKGLYFAGEVLDLDAVTGGFNLQIAWSTGYLA 402


>gi|188591624|ref|YP_001796223.1| Electron-transferring-flavoprotein dehydrogenase [Cupriavidus
           taiwanensis]
 gi|170939019|emb|CAP64034.1| Electron-transferring-flavoprotein dehydrogenase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 436

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 27/149 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSMSCNP 48
           +DVIV+G G +G  AA + AK G                     L  +    I     + 
Sbjct: 7   FDVIVVGAGPSGNAAAYLMAKAGLKVLQVERGEYPGSKNVQGAILYANALEQIIPEFRDD 66

Query: 49  AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           A       H++ E       M       G   R  +  K P     R    R  +     
Sbjct: 67  APLER---HII-EQRMW---MLDDTSFVGTHVRSDDYNKPP---YNRYTIIRAQFDKWFS 116

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSI 137
            ++       + +  V     + + +  +
Sbjct: 117 SKVREAGGFLICETTVNQLIMDGDQVVGV 145


>gi|148269203|ref|YP_001243663.1| thioredoxin reductase [Thermotoga petrophila RKU-1]
 gi|147734747|gb|ABQ46087.1| thioredoxin reductase [Thermotoga petrophila RKU-1]
          Length = 317

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD++V+GGG AG  +A  A + G S                           LV E
Sbjct: 14  IKDKYDIVVVGGGPAGLTSAIYARRAGLSV--------------------------LVVE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G +        +   V N    PA+ G    +  + +              D+  
Sbjct: 48  KAIEGGYV-------NLTHLVENYPGFPAISGEELASKFKEHAEKFGA--------DIYN 92

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EV       +    + + D   I    V++ TG 
Sbjct: 93  AEVVKLEVLGDK-KVVELDDGKKIEAPVVIVATGA 126


>gi|114771732|ref|ZP_01449136.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [alpha proteobacterium
           HTCC2255]
 gi|114547804|gb|EAU50694.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [alpha proteobacterium
           HTCC2255]
          Length = 395

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-----KTSTIGSMSCNPAIGGLGK 55
           MI ++ +V++ GGG AG  +A   AK G     +        +  I S   + A     K
Sbjct: 1   MIRKTTEVLISGGGIAGLTSACAFAKAGFDVVCVDPLPPITNSENINSDLRSTAFLQPAK 60

Query: 56  GHLVR-------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             L         E  A    + R+ADA GI   +  V    A           L    ++
Sbjct: 61  NTLKNAGLWENFEKFATPLEVMRLADAGGINNEIRTVADFNASEISEEPFAWNLPNWLLR 120

Query: 109 REILSQ----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE+++      N+ ++ G+  G  T +    ++VM  N    C  ++   G
Sbjct: 121 RELVNHIQSLSNVTLLFGQKTGRITSR-TTENLVMVGNEQYSCQLLIGADG 170


>gi|67920421|ref|ZP_00513941.1| Thioredoxin-disulfide reductase [Crocosphaera watsonii WH 8501]
 gi|67857905|gb|EAM53144.1| Thioredoxin-disulfide reductase [Crocosphaera watsonii WH 8501]
          Length = 260

 Score = 45.3 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    +DV++IGGG AGC  A   ++    T +          +  NPA+G L   H
Sbjct: 1  METYEFDVVIIGGGPAGCSCALYTSRADFKTVI----------LDKNPAVGALAITH 47


>gi|168988880|pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Peg As Precipitant
 gi|168988881|pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Peg As Precipitant
 gi|168988882|pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Phosphate As Precipitant
 gi|168988883|pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
          Oxidase Crystallized In Phosphate As Precipitant
          Length = 390

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          ++  +DVIV+G G  G  A    AK G  T L+            N +  G  K
Sbjct: 1  MSTHFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGDTK 50


>gi|160885021|ref|ZP_02066024.1| hypothetical protein BACOVA_03018 [Bacteroides ovatus ATCC 8483]
 gi|156109371|gb|EDO11116.1| hypothetical protein BACOVA_03018 [Bacteroides ovatus ATCC 8483]
          Length = 550

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLVELGLRPIVIERGKDVRERKKDLAQINREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|13021829|gb|AAK11556.1|AF299117_2 putative fumarate reductase flavoprotein subunit FrdA
           [Desulfitobacterium dehalogenans]
          Length = 578

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 109/608 (17%), Positives = 182/608 (29%), Gaps = 107/608 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           VIV+GGG AG  AA   A+ G    L +          C     N A+   G+G    E 
Sbjct: 4   VIVVGGGLAGLMAAIKIAEEGTPVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 63

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + DAA     +++       R P    D       + +R A
Sbjct: 64  FDDSVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKHHRTA 123

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E   + S V+ +     C  +V      + 
Sbjct: 124 FAGATTGQQLLYALDEQVRRFEVAGLVTKYEGWEMLSAVIDEGV---CKGIVAQNLYDMG 180

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                    I A            NS +        L        +G+ I    T     
Sbjct: 181 INSFPADAVIVAAGGCGMIFGKSTNSTINTGSVASALYQQGVKYANGEFIQIHPTAI-PG 239

Query: 220 DERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE 279
           +++L   S        R      T    +    + E      +Y        P Y   + 
Sbjct: 240 EDKLRLMSESARGEGGRVW----TYKEGKPWYFLEE------MY--------PAYGNLVP 281

Query: 280 DKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLE-------K 331
             I        H +F    G+N  ++VY + +S   P E+Q +    +   E       K
Sbjct: 282 RDIATRA--IYHVVFDLGLGVNGENMVYLD-LSHKDPHELQVELGGILEIYEKFVGDDPK 338

Query: 332 VNIIRPGYAIEYDY----INPKELFPTLETKKISGLFLAG----Q---IN--GTTGYEEA 378
              +R   A+ Y      ++ +++        I GLF AG    Q    N  G      A
Sbjct: 339 KVPMRIFPAVHYSMGGMWVDYEQMT------NIPGLFAAGECEYQYHGANRLGANSLLSA 392

Query: 379 AAQGLVAG--------INSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSR 430
              G++AG         N+ +     +            +    L  KG   PY ++   
Sbjct: 393 IYGGMIAGPRSLEYIKKNNLKTPGGEEEAFARERKVQEELWSRILNMKGEENPYHIYKEL 452

Query: 431 AE-----------YRISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQEYNFLRSLL 478
            +                  D     L     ++  I +     + A +I++   +  L 
Sbjct: 453 GDIMTQNVTVIRYNNKLTETDQKIQELIERWQRIKLIDDVHWSNQTALFIRQLWNMLELA 512

Query: 479 KSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQ 537
           + + L +     S    +K D   R    +L         + +  P+  +FS   ++   
Sbjct: 513 RVITLGALNRNESRGAHYKPDYPERDDANWLK------TTIATYTPEGPRFSYEPVDVSL 566

Query: 538 IESSYAAY 545
           I      Y
Sbjct: 567 ITPRQRRY 574


>gi|305680059|ref|ZP_07402869.1| flavoprotein disulfide reductase [Corynebacterium matruchotii ATCC
           14266]
 gi|305660679|gb|EFM50176.1| flavoprotein disulfide reductase [Corynebacterium matruchotii ATCC
           14266]
          Length = 479

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--SCNPA---IGGLGKGHLVREI 62
           +++IGGG AG EAA V A+ GA   LI        ++   C P+   I G      +R  
Sbjct: 9   IVIIGGGPAGYEAALVGARYGADITLIEDNGLGGSAVIDDCVPSKSFIAGANVKTDLRRA 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
           + +   M    DAAG     L       VR    +   ++YR
Sbjct: 69  EDMGLSMKLAEDAAGAGSIRLVTALNSRVRQLAGKQSNDIYR 110


>gi|84500173|ref|ZP_00998439.1| hypothetical protein OB2597_09534 [Oceanicola batsensis HTCC2597]
 gi|84392107|gb|EAQ04375.1| hypothetical protein OB2597_09534 [Oceanicola batsensis HTCC2597]
          Length = 547

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M     DVIV+G G AG  AA  AA+ G    L+
Sbjct: 1  MARYEADVIVVGAGLAGLVAATEAAERGRRVLLL 34


>gi|329850137|ref|ZP_08264983.1| FAD dependent oxidoreductase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842048|gb|EGF91618.1| FAD dependent oxidoreductase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 457

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 116/412 (28%), Gaps = 55/412 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI++GGG +G  AA    +   S  L+    +  G          +      + + A+
Sbjct: 30  YDVIIVGGGQSGLGAAFGLLRERVSQVLV-LDENPAGYEGPWETYARMVTLRTPKHLTAI 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  M  +   A  + +  +       + PR   D   Y    +  +    N+ V      
Sbjct: 89  DFAMPSLTFRAFWEAQHGSEGWEAIDKIPRG--DWMAYLRWYREIL----NIPVQNETRV 142

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G    ++    +            V+L TG    G  H+  +   A         S    
Sbjct: 143 GLIEPRDGAYVVHTGS-RTFIARKVILATGIQGGGEWHVPPMIADALPPHLYAHTSQAID 201

Query: 186 FMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
           F          L  G  A  +    + +   +     R      +               
Sbjct: 202 FGALQGKRIAILGGGASAFDNAHHALTEGVAEAHVFVRRPSLPTVNPIRHM--------- 252

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIF-------LEP 297
                  I        A     + S+  R  P   D   R     G Q+        +E 
Sbjct: 253 --EAAGFIARFPALSDADKYAVMSSFFQRNQPPTNDTFARAAAMPGFQLHLGSPWQKVEH 310

Query: 298 EGLNTDVVYPNG--------ISTALPEEIQHQFIRTIPGLEKVNIIRPG--YA----IEY 343
            G    V  P G        +ST L   I    +R    L +  I R    YA    I  
Sbjct: 311 TGDGAIVTTPQGRHDFDFLIVSTGL---ITDPALRPELRLVEAGIRRWKDVYAASGGIRN 367

Query: 344 DYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395
           + I+     P L      G   A    G T   EA  +GL A   SA  S  
Sbjct: 368 NLIDNH---PYLS----PG--FA--FTGRTPESEAQLRGLYAFNYSALISCG 408


>gi|254382619|ref|ZP_04997977.1| glycine oxidase [Streptomyces sp. Mg1]
 gi|194341522|gb|EDX22488.1| glycine oxidase [Streptomyces sp. Mg1]
          Length = 393

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 63/210 (30%), Gaps = 58/210 (27%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---------------------------THKTS 39
           DV+VIGGG  G   A  AA+ G  T L                            T    
Sbjct: 13  DVLVIGGGIIGLVTAWRAARRGLRTVLADPAPGGGAAQVAAGMLAAVTELHYGEETLLGL 72

Query: 40  TIGSMSCNP-------------AIGGLGKGHL-----------VREIDALDGLMGRVA-D 74
            + S +  P              IG    G L           +RE+ AL    G  +  
Sbjct: 73  NLASAARYPDFAAELADASGGMDIGYRACGTLAVALDADDRLHLRELHALQRRCGLESEW 132

Query: 75  AAGIQFRVLNVKKGPAVRG-----PRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
             G + R L     P VRG        Q D      A+      +  +++ +       T
Sbjct: 133 LTGRECRRLEPMLAPGVRGGLRVDGDHQVDPRRLAAALLAACE-RAGVEIRRASAERLLT 191

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  + + D +++R   VVL  G+   
Sbjct: 192 AAGRAVGVRLDDAAVLRADQVVLAAGSLSG 221


>gi|160896732|ref|YP_001562314.1| FAD dependent oxidoreductase [Delftia acidovorans SPH-1]
 gi|160362316|gb|ABX33929.1| FAD dependent oxidoreductase TIGR03364 [Delftia acidovorans
          SPH-1]
          Length = 371

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          ++YD+IV+G G  G   A  AA+ G S  +I    + I +   N   
Sbjct: 2  KNYDLIVVGAGIVGLAHAYAAARRGRSVLVIERDAACISASIRNFGF 48


>gi|218679555|ref|ZP_03527452.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Rhizobium etli CIAT
          894]
          Length = 67

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++++V VIGGG AG  AA   A+ G + AL+  
Sbjct: 2  KTFEVAVIGGGLAGMIAAIALARGGRNVALVAP 34


>gi|126730351|ref|ZP_01746162.1| Dihydrolipoamide dehydrogenase [Sagittula stellata E-37]
 gi|126709084|gb|EBA08139.1| Dihydrolipoamide dehydrogenase [Sagittula stellata E-37]
          Length = 466

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H + 
Sbjct: 3  QYDVIVIGAGPGGYVAAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAKMGLKGK 75


>gi|153005222|ref|YP_001379547.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Anaeromyxobacter sp. Fw109-5]
 gi|152028795|gb|ABS26563.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Anaeromyxobacter sp. Fw109-5]
          Length = 306

 Score = 45.3 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YD++VIG G AG  AA  AA+    T ++
Sbjct: 1  MNECYDIVVIGAGPAGLTAAIYAARARLRTLVL 33


>gi|322369080|ref|ZP_08043646.1| hypothetical protein ZOD2009_06329 [Haladaptatus paucihalophilus
          DX253]
 gi|320551303|gb|EFW92951.1| hypothetical protein ZOD2009_06329 [Haladaptatus paucihalophilus
          DX253]
          Length = 408

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  RS DVIV+G G AGC  + + A+ G  T LI
Sbjct: 1  MTARSADVIVVGAGPAGCVVSYLLARSGVETVLI 34


>gi|163732566|ref|ZP_02140011.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Roseobacter litoralis Och 149]
 gi|161393926|gb|EDQ18250.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Roseobacter litoralis Och 149]
          Length = 442

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 52/159 (32%), Gaps = 24/159 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M N ++D IVIG G AG   A  AA LGA   LI      +G       C P       G
Sbjct: 1   MRNDTFDTIVIGAGSAGLAFARTAADLGARVFLIE--RDALGGTCVNRGCVPKKILWAAG 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
              R I        + AD    +   +N    PA+   R     ++      +       
Sbjct: 59  RTARSI-------AQAADQGIAESSSIN---FPALIRKRDAHIADIRASFADQLTEK--G 106

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           + V +GE         ++               +VL TG
Sbjct: 107 VTVRRGEAT-VCNANTVVVGDKT-----YHAQHLVLATG 139


>gi|313203348|ref|YP_004042005.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
 gi|312442664|gb|ADQ79020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
          Length = 443

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 29/151 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IV+G G AG  A   A +   S   +     T+G    N             E+  
Sbjct: 172 TYDLIVVGAGPAGISATLAAKEANLSVLTLEQ--DTLGGTVFN-FPRSKVVMTSAMELP- 227

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              L G+V      + ++L+                      +   +L++  + V +   
Sbjct: 228 ---LHGKVKFRETSKTQLLD----------------------LWHSVLAKNEITVKENSK 262

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                  + I  +           TV+L+ G
Sbjct: 263 VQAIIPDDGIFKVQTAQGETYTSKTVLLSIG 293


>gi|300813110|ref|ZP_07093488.1| thioredoxin-disulfide reductase [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|313123322|ref|YP_004033581.1| thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
 gi|300495951|gb|EFK31095.1| thioredoxin-disulfide reductase [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|312279885|gb|ADQ60604.1| Thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
          Length = 310

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV++IG G AG  AA  AA+    T L+
Sbjct: 1  MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLL 33


>gi|71281654|ref|YP_270675.1| oxidoreductase, FAD/FMN-binding [Colwellia psychrerythraea 34H]
 gi|71147394|gb|AAZ27867.1| oxidoreductase, FAD/FMN-binding [Colwellia psychrerythraea 34H]
          Length = 686

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+VIGGG AG EAA V A+ G    LI       G +
Sbjct: 393 VVVIGGGPAGMEAARVCAERGHDVTLIEKNPELGGQI 429


>gi|288560727|ref|YP_003424213.1| geranylgeranyl reductase family protein [Methanobrevibacter
          ruminantium M1]
 gi|288543437|gb|ADC47321.1| geranylgeranyl reductase family protein [Methanobrevibacter
          ruminantium M1]
          Length = 396

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+VIG G AG  AA  AAK G    L+  K+       C        +G   +  D LD
Sbjct: 5  DVLVIGAGPAGSSAARFAAKGGVDVILMDKKSEIGAPKRC-------AEGVSKKTFDKLD 57

Query: 67 GLM 69
            M
Sbjct: 58 LEM 60


>gi|118465913|ref|YP_884208.1| dehydrogenase [Mycobacterium avium 104]
 gi|118167200|gb|ABK68097.1| putative dehydrogenase [Mycobacterium avium 104]
          Length = 569

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIV+G GH G  AAA  AK G    ++     T G M+   +       + + E     
Sbjct: 13 DVIVVGSGHNGLVAAAYLAKAGLDVLVVEASP-TAGGMTSTNSFAPEAPEYTINEASIQA 71

Query: 67 GL 68
           L
Sbjct: 72 SL 73


>gi|150396635|ref|YP_001327102.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Sinorhizobium medicae
          WSM419]
 gi|150028150|gb|ABR60267.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Sinorhizobium medicae WSM419]
          Length = 403

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD+ +IG G AG   A   A+ G   AL+  K 
Sbjct: 3  HYDIAIIGAGLAGSLTAIALARKGHRVALVGPKP 36


>gi|325125371|gb|ADY84701.1| TrxB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 310

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV++IG G AG  AA  AA+    T L+
Sbjct: 1  MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLL 33


>gi|323141234|ref|ZP_08076133.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414273|gb|EFY05093.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 422

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 36/167 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YDVI++GGG AG  AA  A + GA   ++                        +  
Sbjct: 1   MNQLYDVIIVGGGPAGLSAAYSAWQNGAKKIVV------------------------IER 36

Query: 62  IDALDGLMGRVADAAGI--QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
              L G++ +          F+      G A R     AD+          ++    LDV
Sbjct: 37  DRELGGILQQCIHNGFGLHHFKEELTGPGYAHRCIELVADKPE-----IETLVDTMVLDV 91

Query: 120 IQG-EVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                V   N EK        ++++      R    +   G    GV
Sbjct: 92  QNNKTVIAVNPEKGLLKLEGKTVILTMGCRERTRGAIRIPGERPAGV 138


>gi|296227225|ref|XP_002759281.1| PREDICTED: squalene monooxygenase [Callithrix jacchus]
          Length = 582

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGILGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYQVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +DA   +G M    ++         + +   V+  R       + +++++  +++ N 
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPFPLSENNQVQSGRA-FHHGRFIMSLRKAAMAEPNA 243

Query: 118 DVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV--IHIGKLKIP 170
             I+G V     E + +  +        D   +     V+  G F +    +   K+ + 
Sbjct: 244 KFIEGVVLQLLEEDDAVMGVQYKDKETGDTKELHAPLTVVADGLFSKFRKSLISNKVSVS 303

Query: 171 A---GRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIWD 212
           +   G +  +      N              +     +T       G   R + +  +++
Sbjct: 304 SHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMFE 362

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIE 239
               Q  D    PF   T+    R + 
Sbjct: 363 NIYPQVPDHLKKPFLEATESSHLRSMP 389


>gi|206562528|ref|YP_002233291.1| putative FAD dependent oxidoreductase [Burkholderia cenocepacia
          J2315]
 gi|198038568|emb|CAR54527.1| putative FAD dependent oxidoreductase [Burkholderia cenocepacia
          J2315]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YDV ++GGG  G  AA    + G    L 
Sbjct: 5  RHYDVAIVGGGLVGASAALALTRRGLRVGLF 35


>gi|169841803|ref|ZP_02874912.1| glucose-inhibited division protein A [candidate division TM7
           single-cell isolate TM7a]
          Length = 45

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
           +  S  L +   ++ F+  R +T TP R+   +I + K ++   
Sbjct: 1   EPASVDLPDRLAEYGFELDRYQTATPPRIAKSSIDFSKMQELKG 44


>gi|160931366|ref|ZP_02078764.1| hypothetical protein CLOLEP_00201 [Clostridium leptum DSM 753]
 gi|156869613|gb|EDO62985.1| hypothetical protein CLOLEP_00201 [Clostridium leptum DSM 753]
          Length = 463

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV VIGGG AG  AA  AA+LG   A+ 
Sbjct: 1  MRKQYDVAVIGGGPAGYVAAIKAAQLGGRAAVF 33


>gi|154150921|ref|YP_001404539.1| hypothetical protein Mboo_1378 [Candidatus Methanoregula boonei
           6A8]
 gi|153999473|gb|ABS55896.1| HI0933 family protein [Methanoregula boonei 6A8]
          Length = 415

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 66/434 (15%), Positives = 123/434 (28%), Gaps = 79/434 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD ++ G G AG   A  AA       L         +      I G G+ +L  E D
Sbjct: 2   EKYDTVIAGAGPAGIFCAIHAAAPQTRVLL----LEKNATPGAKLNISGTGQCNLTHEGD 57

Query: 64  ALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                   G  G+    + + F    +      RG                   +     
Sbjct: 58  IRSFFSRYGSHGQFLKPSLLSFTNKALIGFFEERGLSF---------------ETTPGGK 102

Query: 119 VI-----QGEVAGFNTEKNIISSIVMQDNSMIRCSTVV--LTTGTFLRGVIHIGKLKIPA 171
           +        ++      +  +  ++++    +R   +           G ++   L +  
Sbjct: 103 IFPRSRNAADITALLIRECELREVILKCGEPVRQVEIANPGFRVQISAGWVYARHLVLAT 162

Query: 172 GRMGDSPSNSLFNSFM---KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
           G      + S  + +            +       +  +   +            +PFS 
Sbjct: 163 GGASYPKTGSTGDGYRIAASLGHTITDVGPALSPVI-AEPFPFSSLAGITF--PALPFSL 219

Query: 229 M--TDKITNRQIECGITRTNLETHRI------IMENIKHSAIYSGDIKSYGPRYCPSIED 280
                +I     +   T T L    I      I    +    +SG ++         I  
Sbjct: 220 WRNGRRIMEGNGDLLFTHTGLSGPGILDCSRDIRAGDEIRIAFSGSVRRDALER--EILA 277

Query: 281 KIVRFGER--------------------NGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
            I R   +                        +  +  G +      N + + L E    
Sbjct: 278 AIARSPSKAIKSLVAGLGIPERLARLLPECAGVPADSTGAHLTAAARNRLISMLTEYPVR 337

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ---INGTTGYEE 377
             + ++  L    + R G A+  D +NPK    T+E++ + GLF AG+   I+G TG   
Sbjct: 338 --VSSVGNLSVAMVTRGGVAL--DEVNPK----TMESRLVPGLFFAGEVLDIDGDTGGF- 388

Query: 378 AAAQGLVAGINSAR 391
                   G  +AR
Sbjct: 389 NLQAAFSTGHCAAR 402


>gi|254254982|ref|ZP_04948299.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
 gi|124899627|gb|EAY71470.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YDV ++GGG  G  AA    + G    L 
Sbjct: 5  RHYDVAIVGGGLVGASAALALTRRGLRVGLF 35


>gi|107027074|ref|YP_624585.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|116691729|ref|YP_837262.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
 gi|105896448|gb|ABF79612.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|116649729|gb|ABK10369.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YDV ++GGG  G  AA    + G    L 
Sbjct: 5  RHYDVAIVGGGLVGASAALALTRRGLRVGLF 35


>gi|325107607|ref|YP_004268675.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Planctomyces brasiliensis DSM 5305]
 gi|324967875|gb|ADY58653.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Planctomyces brasiliensis DSM 5305]
          Length = 475

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +  SYDVIVIG G AG   A + AK G S  L+ H 
Sbjct: 9  VQDSYDVIVIGSGLAGLTGANILAKQGYSVLLLEHH 44


>gi|258544884|ref|ZP_05705118.1| sarcosine oxidase, alpha subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258519804|gb|EEV88663.1| sarcosine oxidase, alpha subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 999

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 67/181 (37%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIGGG  G  AA  +A+ G  T L                         V E
Sbjct: 161 LHHHVDVLVIGGGLCGLLAAEASARAGLKTLL-------------------------VDE 195

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +   G +   A     Q R  +    PA            YR A+   I +  NL+++ 
Sbjct: 196 QNEPGGWLMSEA-----QTRFDDQ---PA----------HEYRAALLARINTLPNLEIL- 236

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                                   RC+ V +    +++ +        PA R  D P   
Sbjct: 237 -----------------------SRCAAVAVHDHNYVQALEQKQDHLPPAARDPDQPRQR 273

Query: 182 L 182
           L
Sbjct: 274 L 274


>gi|116513718|ref|YP_812624.1| thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116093033|gb|ABJ58186.1| Thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
          Length = 310

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV++IG G AG  AA  AA+    T L+
Sbjct: 1  MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLL 33


>gi|325684481|gb|EGD26645.1| thioredoxin reductase [Lactobacillus delbrueckii subsp. lactis
          DSM 20072]
          Length = 310

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV++IG G AG  AA  AA+    T L+
Sbjct: 1  MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLL 33


>gi|312129152|ref|YP_003996492.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Leadbetterella byssophila DSM 17132]
 gi|311905698|gb|ADQ16139.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Leadbetterella byssophila DSM 17132]
          Length = 459

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV+V+GGG +G  AA  AA+ G    L+
Sbjct: 13 VRKEVDVLVVGGGPSGITAALAAAEDGLKVLLV 45


>gi|299770635|ref|YP_003732661.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter sp. DR1]
 gi|298700723|gb|ADI91288.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter sp. DR1]
          Length = 384

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNTQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|295398510|ref|ZP_06808544.1| thioredoxin-disulfide reductase [Aerococcus viridans ATCC 11563]
 gi|294973233|gb|EFG49026.1| thioredoxin-disulfide reductase [Aerococcus viridans ATCC 11563]
          Length = 315

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +DV+V+G G AG  AA  A++   S AL+
Sbjct: 9  QKFDVVVVGAGPAGMTAALYASRANLSVALL 39


>gi|160914669|ref|ZP_02076883.1| hypothetical protein EUBDOL_00676 [Eubacterium dolichum DSM 3991]
 gi|158433209|gb|EDP11498.1| hypothetical protein EUBDOL_00676 [Eubacterium dolichum DSM 3991]
          Length = 421

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVIVIGGG AG  +A  A++ GA+  L+
Sbjct: 1  MKQQYDVIVIGGGPAGLASAIAASEHGANKVLV 33


>gi|149175466|ref|ZP_01854087.1| probable xanthan lyase [Planctomyces maris DSM 8797]
 gi|148845734|gb|EDL60076.1| probable xanthan lyase [Planctomyces maris DSM 8797]
          Length = 717

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGK-GH 57
           +  SYDV+V GG   G  AA  A ++G S  LI   TH             IG     G 
Sbjct: 49  LKSSYDVVVYGGTSGGIAAAIQAERMGKSVLLIEPGTHLGGLSSGGLGATDIGNKAAIGG 108

Query: 58  LVREIDALDG--LMGRVADAAGIQFRVLN-VKKG-------PAVRGPRTQADRELYRLAM 107
           + RE     G       +     Q    N   KG                 ++ L+  A+
Sbjct: 109 IAREFYRRLGDYYSLDSSWKYQKQGEYKNRRSKGTEKEMWTFEPHVAEETFEKMLHEQAI 168

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
              +L Q+ LD+ QG     N E+  I+SI M+   +I     +  T  +   ++ +  +
Sbjct: 169 --PVLKQQRLDLKQG----VNKEEARIASIKMESGLVISGKVFIDAT--YEGDLMAVAGV 220

Query: 168 KIPAGR 173
               GR
Sbjct: 221 SYHVGR 226


>gi|104774054|ref|YP_619034.1| putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|104774062|ref|YP_619042.1| putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423135|emb|CAI97897.1| Putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423143|emb|CAI97914.1| Putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 489

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          ++D++V+G G +G  AA  A++ GA  AL+  K    G        G  G   +      
Sbjct: 2  NFDIVVVGAGASGISAALTASECGAKVALLE-KGDKFGGAG---MFGAQGLFAVESRAQK 57

Query: 65 LDGLMGRVADA 75
            G+   + DA
Sbjct: 58 EAGVKYSLKDA 68


>gi|228477204|ref|ZP_04061842.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228251223|gb|EEK10394.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 393

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + +D IVIGGG AG  A   +A  G  T LI   
Sbjct: 2  KHFDTIVIGGGPAGMMATIASAFYGQQTLLIEKN 35


>gi|212541694|ref|XP_002151002.1| monoxygenase, putative [Penicillium marneffei ATCC 18224]
 gi|210068301|gb|EEA22393.1| monoxygenase, putative [Penicillium marneffei ATCC 18224]
          Length = 424

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 13/190 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIV+G G  G  +AA   + G    +   K++ IG +    +I   G   L R   +   
Sbjct: 5   VIVVGAGIGGLTSAAALRRAGCDVQIFE-KSAFIGQIGAALSIASNGARVLSRLGFSYSR 63

Query: 67  -GLMGRVADAA--GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQG 122
                        G    VL      +      +  R ++R+ +  E+L    N D+  G
Sbjct: 64  ASACTISTWETLSGQTMEVLRSVDLSSSEKMFGEPARTVHRVDLHNELLRIATNPDIEGG 123

Query: 123 EVAGFNTEKNIISS-----IVMQDNSMIRCSTVVLTTG--TFLRGVIHIGKLKIPAGRMG 175
                +    ++++     I ++D S+     V+   G  + +R V+   K+   +G  G
Sbjct: 124 SPVKLHLSSEVVAATSDGTITLRDGSIYSADVVIGADGLRSAIRDVVLSDKIPPQSGHAG 183

Query: 176 DSPSNSLFNS 185
            +    L +S
Sbjct: 184 LAAFRFLVDS 193


>gi|220907083|ref|YP_002482394.1| geranylgeranyl reductase [Cyanothece sp. PCC 7425]
 gi|219863694|gb|ACL44033.1| geranylgeranyl reductase [Cyanothece sp. PCC 7425]
          Length = 407

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG  AA V A+ G  T LI  K   +         GG     +V E D    
Sbjct: 5   VAVVGGGPAGSSAAEVLARAGIETYLIERKLDNVKPC------GGAIPLCMVSEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++        G   + D   Y    +RE+L 
Sbjct: 55  LPPEIIDRRVRKMKMISPSNIEVNIGSTLKQD--EYIGMCRREVLD 98


>gi|126662761|ref|ZP_01733760.1| D amino acid oxidase (DAO) family protein [Flavobacteria
          bacterium BAL38]
 gi|126626140|gb|EAZ96829.1| D amino acid oxidase (DAO) family protein [Flavobacteria
          bacterium BAL38]
          Length = 376

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + +D I+IG G  G  AA   AK G +  ++ H      
Sbjct: 2  QQFDKIIIGAGLYGLYAALFCAKRGENVLVLEHDPEAFS 40


>gi|114762092|ref|ZP_01441560.1| dihydrolipoamide dehydrogenase [Pelagibaca bermudensis HTCC2601]
 gi|114545116|gb|EAU48119.1| dihydrolipoamide dehydrogenase [Roseovarius sp. HTCC2601]
          Length = 466

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
           M + + DV +IG G AG  A   A K GA T LI         +T+G M     I     
Sbjct: 1   MADLTCDVAIIGAGTAGLAAERNARKHGAKTLLIDPSFAGTTCATVGCMPSKLLIAAARS 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            H  R+        G V               GPAV   R +  R+ +  A +  I+   
Sbjct: 61  AHGARQSGVFGVETGEV------------RIDGPAVL-RRVREHRDRFAQATRDSIMDLP 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
               +Q             +++ + D   +  + V++ TG+
Sbjct: 108 EEIRVQARA-----RFTSATTLTLDDGRTVAANAVIIATGS 143



 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 64/199 (32%), Gaps = 28/199 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           VIGGG  G E A   A+LG   AL   +  T+  + C        K H      AL   M
Sbjct: 176 VIGGGVIGLELAQAMARLGVRVALFDQQ-ETLAQVRC-------AKVHA-----ALQEAM 222

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVAG 126
            +  D        L     P+ +  R + D E       + ++S     N+  +  E  G
Sbjct: 223 AQEMDLH------LGTDPQPSEQDGRVRIDWEGQSETFDKVLVSTGRPPNVQGLGLETTG 276

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNS 185
              +   +  I  +          +       R V+H        AGR       +L  S
Sbjct: 277 LALDDKGMPEIDPETMQCGDAPIFMAGDSNAGRPVLHEASDEGAIAGRNA-VAYPALVRS 335

Query: 186 FMKFDFDTGRLKTGTPARL 204
             K +F      T T   L
Sbjct: 336 DRKVNFAI----TFTEPPL 350


>gi|113953012|ref|YP_729964.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CC9311]
 gi|113880363|gb|ABI45321.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CC9311]
          Length = 480

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLV 59
           N  +DVIVIG G+ G +AA  AA  G   A++       G+     C P+   L     V
Sbjct: 5   NFDFDVIVIGAGYGGFDAAKHAADHGLKVAVLE-SRDMGGTCVNRGCVPSKALLAASGRV 63

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           RE+   + L G    AA ++F     +K  A    +  A       A   + L +  + +
Sbjct: 64  RELADAEHLAGFGIHAAPVRFE----RKKIADHANQLVA----TIRANLTKTLERAGVTI 115

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           ++G+      E      +         +    V+L TG+
Sbjct: 116 LRGQGR---LEGPQRVGVREVSGVERVLTARDVILATGS 151


>gi|325968156|ref|YP_004244348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Vulcanisaeta moutnovskia 768-28]
 gi|323707359|gb|ADY00846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Vulcanisaeta moutnovskia 768-28]
          Length = 1137

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          ++++GGG AG EAA   A +G    L+    +  G M
Sbjct: 6  ILILGGGIAGIEAALALANMGYRVTLVEKSPAIGGKM 42


>gi|307596381|ref|YP_003902698.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
          distributa DSM 14429]
 gi|307551582|gb|ADN51647.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
          distributa DSM 14429]
          Length = 1129

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          ++++GGG AG EAA   A +G    L+    +  G M
Sbjct: 6  ILILGGGIAGIEAALALANMGYRVTLVEKSPAIGGKM 42


>gi|226366245|ref|YP_002784028.1| oxidoreductase/HEAT repeat-containing protein [Rhodococcus opacus
           B4]
 gi|226244735|dbj|BAH55083.1| putative oxidoreductase [Rhodococcus opacus B4]
          Length = 899

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 37/213 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLV----R 60
           DV+VIGGG AG  AA  AA+ GA+  L+         +  +   A+G  G  + V     
Sbjct: 15  DVLVIGGGTAGTMAALTAAENGANVLLLE-----KAHVRHSGALAMGMDGVNNAVIPGKA 69

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVK-KGPAVRGPRT-----QADRELYRLAMQREILSQ 114
           E +     + R  D    Q  V     +G A+   R      + +++ Y     R +   
Sbjct: 70  EPEDYVAEITRANDGIVNQRTVYQTATRGFAM-VQRLEKYGVKFEKDEYGEYAVRRVHRS 128

Query: 115 ENLDVIQGEVAGFNTEKNII------------------SSIVMQDNSMIRCSTVVLTTGT 156
            +  +   E          +                    ++ ++   +  + +   TG 
Sbjct: 129 GSYVLPMPEGKDLKKALYRVLRQRKMREKIRIENRLMPVRVLTENGRAVGAAALNTRTGE 188

Query: 157 FLR-GVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
           F+  G   +     P GR+G   S  L+ ++  
Sbjct: 189 FVAVGAKAVILATGPCGRLGLPASGYLYGTYEN 221


>gi|189459848|ref|ZP_03008633.1| hypothetical protein BACCOP_00478 [Bacteroides coprocola DSM 17136]
 gi|189433458|gb|EDV02443.1| hypothetical protein BACCOP_00478 [Bacteroides coprocola DSM 17136]
          Length = 524

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            R +DV+V GGG AG  AA  +A+ G    L+ 
Sbjct: 216 ERHFDVLVAGGGPAGVSAAIYSARKGLKVGLVA 248


>gi|149201781|ref|ZP_01878755.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseovarius sp. TM1035]
 gi|149144829|gb|EDM32858.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseovarius sp. TM1035]
          Length = 400

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
           M   SYD++V GGG AG  AAAV    G S   +            GS     A     +
Sbjct: 1   MTQASYDIVVSGGGVAGLTAAAVFGSAGFSVLCVDPAPPVTARDAAGSDLRTTAFLQPAQ 60

Query: 56  GHLVREI-------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             L R          A D  + R+ DA G       V++  A           L    ++
Sbjct: 61  ALLDRAGLWARLAPHATDLQVMRIVDAGGELPEPRVVREFNASDISERPFGWNLPNWLLR 120

Query: 109 RE----ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE    + S  ++    G        +   + + + D + +RC  V+   G
Sbjct: 121 REMVAHLESLPSVTFKPGTGTATLFTREAEARVGLSDGTRVRCRLVIAADG 171


>gi|104773721|ref|YP_618701.1| thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
 gi|16124249|gb|AAL14787.1| TrxB [Lactobacillus delbrueckii]
 gi|103422802|emb|CAI97443.1| Thioredoxin reductase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
          Length = 310

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DV++IG G AG  AA  AA+    T L+
Sbjct: 1  MTKEVDVVIIGAGPAGMTAAVYAARANLKTVLL 33


>gi|163846910|ref|YP_001634954.1| FAD dependent oxidoreductase [Chloroflexus aurantiacus J-10-fl]
 gi|222524732|ref|YP_002569203.1| FAD dependent oxidoreductase [Chloroflexus sp. Y-400-fl]
 gi|163668199|gb|ABY34565.1| FAD dependent oxidoreductase [Chloroflexus aurantiacus J-10-fl]
 gi|222448611|gb|ACM52877.1| FAD dependent oxidoreductase [Chloroflexus sp. Y-400-fl]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           YDVIV+GGGH G   A   A+ G    ++  +   +G   C 
Sbjct: 6  DYDVIVVGGGHNGLTCAGYLARAGKRVLVLERRP-IVGGAVCT 47


>gi|222479834|ref|YP_002566071.1| geranylgeranyl reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452736|gb|ACM57001.1| geranylgeranyl reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 456

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGG 52
          M    YDV+V G G AGC AAA  A  G    ++  K     G ++C  A+ G
Sbjct: 1  MSIDEYDVVVAGAGTAGCYAAATIANEGLDVVIVERKDAEEAGHIACGDALKG 53


>gi|126322666|ref|XP_001381307.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 571

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGG 52
           +   YD  VI++G G  G   AAV A+ G    +I         I      P    A+  
Sbjct: 116 VTSEYDPEVIIVGSGVLGSALAAVLARDGRKVTVIERDLKEPDRILGELLQPGGFCALKD 175

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----LAMQ 108
           LG   +V  +DA   + G V    G +  V      P     R Q+ R  +     + ++
Sbjct: 176 LGLEGVVEGLDAHV-VNGYVIHNQGCREEV--EVPFPRSADSRVQSGRAFHHGRFIMNLR 232

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIH 163
           R  +++ N   I+G V     E++++  +        D   +R    V+  G F +   +
Sbjct: 233 RAAMAEPNTKYIEGVVLKLLEEEDVVVGVQYKDKETGDIKELRAPLTVVADGLFSKFRKN 292

Query: 164 IGKLKIP 170
           +   K+ 
Sbjct: 293 LVSNKVS 299


>gi|118472302|ref|YP_890193.1| glucose-methanol-choline oxidoreductase [Mycobacterium smegmatis
          str. MC2 155]
 gi|118173589|gb|ABK74485.1| glucose-methanol-choline oxidoreductase [Mycobacterium smegmatis
          str. MC2 155]
          Length = 551

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +    DVIV+G G AG  AA   A+ G S  +I        S + +PA G +
Sbjct: 20 MTDELDVIVVGAGLAGSVAALTVARAGYSVGVIECGPPR--SQNRDPAPGKM 69


>gi|186683049|ref|YP_001866245.1| succinate dehydrogenase flavoprotein subunit [Nostoc punctiforme
           PCC 73102]
 gi|186465501|gb|ACC81302.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Nostoc punctiforme PCC 73102]
          Length = 575

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 43/197 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AGC AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGCRAAVEIARTDPSLNIAVVAKTHPIRSHSVAAQGGMAASLKNVDSQD 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQA--- 98
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  SWEAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHLGVLF-SRLPDGRIAQRAFGGH 121

Query: 99  --DRELYRL-----AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIV---MQDN-- 142
             +R  Y       A+  E+++   +  + V +   V     E+N    +V   + D   
Sbjct: 122 SHNRTCYAADKTGHAILHELVNNLRRYGVQVYEEWYVMRLILEENEAKGVVMFHLLDGHI 181

Query: 143 SMIRCSTVVLTTGTFLR 159
            ++R   V+  TG + R
Sbjct: 182 EVVRAKAVMFATGGYGR 198


>gi|323359508|ref|YP_004225904.1| aspartate oxidase [Microbacterium testaceum StLB037]
 gi|323275879|dbj|BAJ76024.1| aspartate oxidase [Microbacterium testaceum StLB037]
          Length = 511

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 51/180 (28%), Gaps = 32/180 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL--------------------ITHKTSTIGSMSCN 47
           V+V+G G AG  AA  A + G    +                    +TH   T+ S + +
Sbjct: 4   VVVVGSGIAGLTAALHAHENGCRVTVVTKGALPDTNTRWAQGGIAAVTHPADTLASHAAD 63

Query: 48  PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRL 105
               G G          +     R+A+  G          G   RG        R L+  
Sbjct: 64  TVTAGAGLSDPAAVDVLVGEGPARIAELVGRGVAFDRTADGDFSRGLEAAHAMPRVLHAG 123

Query: 106 AMQREILSQ---------ENLDVIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   Q           L V + E           ++ I +     +    V+L TG
Sbjct: 124 GDATGAEIQAALGAAVRAAGLTVREHEQLRDLVVRDGRVTGIELDGGERLDADAVILATG 183


>gi|310790385|gb|EFQ25918.1| GMC oxidoreductase [Glomerella graminicola M1.001]
          Length = 786

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------THKTSTIGSMSCNPAI 50
           N +YDVIV+GGG AG  AA   A+ G S   I           +  ++  N  +
Sbjct: 211 NTTYDVIVVGGGPAGIIAAERLAEKGVSVLFIERGVANAVHLGSKLALPWNNTL 264


>gi|221197282|ref|ZP_03570329.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2M]
 gi|221203955|ref|ZP_03576973.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2]
 gi|221176121|gb|EEE08550.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2]
 gi|221183836|gb|EEE16236.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2M]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV ++GGG  G   A   A+ G   AL 
Sbjct: 6  HYDVAIVGGGLVGASTALALARRGLRVALF 35


>gi|170734722|ref|YP_001773836.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
 gi|169820760|gb|ACA95341.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
          Length = 433

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 23/190 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG--------GLGKGHL 58
           DV ++G G AG  AA  AA LG    L+      +G  + N  IG        G  +  +
Sbjct: 22  DVCIVGAGIAGTSAALEAAALGRKVVLVD-SLPALGGQAVNSIIGTFCGLFSNGPQRFQV 80

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              I   DG++  + +   + ++     +GP         D       ++++IL    + 
Sbjct: 81  THGI--ADGILRDLGEKGALHYK-----EGP--LTTVVLYDEVALARWIEQKILD-AGIT 130

Query: 119 VIQGEVA-GFNTEKNIIS--SIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+ G V      E   +    +  +   + I     V  +G      +     + P   +
Sbjct: 131 VVLGAVLRDVVREGRRVRELGVATRYGDVRIAADGFVDASGDAALTWLAGFDCQEPETPI 190

Query: 175 GDSPSNSLFN 184
             +    L N
Sbjct: 191 RGTQMIVLEN 200


>gi|160938629|ref|ZP_02085981.1| hypothetical protein CLOBOL_03524 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438328|gb|EDP16087.1| hypothetical protein CLOBOL_03524 [Clostridium bolteae ATCC
           BAA-613]
          Length = 390

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 41/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YD+I++GGG AG  AA  A +    T L+                          E
Sbjct: 1   MDSVYDLIIVGGGPAGLSAAIYAGRSERRTLLL--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             +  G +          + + N    P  +    Q   EL+R            +++ +
Sbjct: 35  KGSYGGRI-------NDTYEIRNY---PGTKADSGQHLMELFREHAA----GHPTVELKR 80

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V G   E +    +  +        +V+L  GT  R +   G+ +   
Sbjct: 81  TTVTGVRKEDDTFI-VETKRRGDFMARSVILDLGTRPRELNIKGEKEFTG 129


>gi|126726333|ref|ZP_01742174.1| dihydrolipoamide dehydrogenase [Rhodobacterales bacterium HTCC2150]
 gi|126704196|gb|EBA03288.1| dihydrolipoamide dehydrogenase [Rhodobacterales bacterium HTCC2150]
          Length = 464

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M  +SYD+IVIG G  G  AA   A+LG   A++      +G +     C P    L   
Sbjct: 1   MAAKSYDMIVIGAGPGGYVAAIRGAQLGLKVAIVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +  ++         V +       +++  +G A +                  ++ +  
Sbjct: 59  EIFHQMHRAKEFGLSVENIGFDLKAIIDRSRGVAKQMAGG-----------ISHLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGV 161
           +DV+ G        K  +S +        +    ++L TG   R +
Sbjct: 108 IDVVMGAAT--LPAKGKVS-VKTAKGVEELTSKNIILATGARAREL 150


>gi|126459240|ref|YP_001055518.1| thioredoxin-disulfide reductase [Pyrobaculum calidifontis JCM
          11548]
 gi|126248961|gb|ABO08052.1| Thioredoxin-disulfide reductase [Pyrobaculum calidifontis JCM
          11548]
          Length = 320

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +   YDV++IG G AG  AA  AA+    T +++   
Sbjct: 1  MEVDYDVVIIGAGIAGLSAALYAARQRLKTLVVSKDL 37


>gi|254249012|ref|ZP_04942332.1| Glycine/D-amino acid oxidase [Burkholderia cenocepacia PC184]
 gi|124875513|gb|EAY65503.1| Glycine/D-amino acid oxidase [Burkholderia cenocepacia PC184]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YDV ++GGG  G  AA    + G    L 
Sbjct: 5  RHYDVAIVGGGLVGASAALALTRRGLRVGLF 35


>gi|331269898|ref|YP_004396390.1| 2-enoate reductase [Clostridium botulinum BKT015925]
 gi|329126448|gb|AEB76393.1| 2-enoate reductase [Clostridium botulinum BKT015925]
          Length = 667

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +V+VIGGG AGCEAA V A  G   +L   KT  +G
Sbjct: 407 NVLVIGGGVAGCEAARVCAIRGHKVSLYE-KTDKLG 441


>gi|330503176|ref|YP_004380045.1| dihydrolipoamide dehydrogenase [Pseudomonas mendocina NK-01]
 gi|328917462|gb|AEB58293.1| dihydrolipoamide dehydrogenase [Pseudomonas mendocina NK-01]
          Length = 478

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + +DV+VIG G  G  AA  AA+LG  TA I
Sbjct: 1  MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACI 33


>gi|319899434|ref|YP_004159531.1| SdhA succinate dehydrogenase flavoprotein subunit [Bartonella
           clarridgeiae 73]
 gi|319403402|emb|CBI76970.1| SdhA succinate dehydrogenase flavoprotein subunit [Bartonella
           clarridgeiae 73]
          Length = 614

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 64/224 (28%), Gaps = 60/224 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DV+VIG G AG  A    A+ G  TA IT    T        A GG+        
Sbjct: 20  VDHKFDVVVIGAGGAGLRATLGMAEQGLRTACITKVFPTRS--HTVAAQGGIAASLSNMG 77

Query: 62  IDALDGLMGRVA-------DAAGIQFRVLNVK---------------------------- 86
            D     +           D   +++ V N                              
Sbjct: 78  PDNWQWHLYDTVKGSDWLGDTDAMEYLVRNAPAAVYELEHYGVPFSRTQEGKIYQRPFGG 137

Query: 87  ------KGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNI 133
                 +GP V+     ADR        LY  +++           I+           +
Sbjct: 138 HTTEFGEGPPVQRTCAAADRTGHAILHTLYGQSLKHNAQ-----FFIEYFALDLIMTDGV 192

Query: 134 ISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + +V   + D ++       VVL TG + R            G
Sbjct: 193 CTGVVAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTG 236


>gi|319793356|ref|YP_004154996.1| fad dependent oxidoreductase [Variovorax paradoxus EPS]
 gi|315595819|gb|ADU36885.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS]
          Length = 452

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGG AG  AAA+ A+ G    L+          + +P    +G+  L   ++  D
Sbjct: 19  DVIVIGGGPAGSTAAALLAQQGRKVVLL--------EKAHHPRF-HIGESLLPANVELFD 69

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L  R      I      ++        R+  D   +     + + S     V + E+  
Sbjct: 70  RLGVRN-QVEKIGMPKFGIEFVSPEHEHRSYVD---FAEGWDKSLDSAW--QVRRSELDE 123

Query: 127 FNTEKNIISSIVMQDNSMIR 146
                         +   +R
Sbjct: 124 LLFRNAATRGAETIEGCKVR 143


>gi|307594546|ref|YP_003900863.1| electron-transferring-flavoprotein dehydrogenase [Vulcanisaeta
          distributa DSM 14429]
 gi|307549747|gb|ADN49812.1| Electron-transferring-flavoproteindehydrogenase [Vulcanisaeta
          distributa DSM 14429]
          Length = 425

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIV+G G AG  AA   A  G    +I
Sbjct: 1  MGTKFDVIVVGAGPAGLTAAQQLASKGFKVLVI 33


>gi|242278069|ref|YP_002990198.1| HI0933 family protein [Desulfovibrio salexigens DSM 2638]
 gi|242120963|gb|ACS78659.1| HI0933 family protein [Desulfovibrio salexigens DSM 2638]
          Length = 393

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVI++G G +G   A  AA  G    ++ H     G       + G GK +       
Sbjct: 7   KYDVIILGAGASGLYCAMHAAARGRKVLVLDHS----GKAGRKIRVAGGGKCNFT----- 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQG 122
                    D A   +   N     +      Q D   +      E   +E+  L  ++G
Sbjct: 58  -------NMDVAADNYISANPHFVKSALARHNQWDFISFVAETGIEYEEREDGQLFTLEG 110

Query: 123 E--VAGFNTEKNIISSIVMQDNSMIR 146
              +AG    K   + +    +  I 
Sbjct: 111 AGLIAGLLVSKCHRAGVETLLDRQIE 136


>gi|85715141|ref|ZP_01046125.1| hypothetical protein NB311A_01115 [Nitrobacter sp. Nb-311A]
 gi|85698056|gb|EAQ35929.1| hypothetical protein NB311A_01115 [Nitrobacter sp. Nb-311A]
          Length = 398

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 54/166 (32%), Gaps = 40/166 (24%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-------NPAIGGLGKGHLV 59
           DV ++GGG AG   AA+  + G S  +I    +    + C        P +   G    +
Sbjct: 5   DVAIVGGGLAGSTTAAMLGRAGISAMMIDPHMTYPPDLRCEKLGGTQLPRLRRTGLEEEI 64

Query: 60  REIDALDGLMGRVA----------DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                LDG +              D  G+ +  L       V   R Q            
Sbjct: 65  LRATTLDGEIWEARFGFVVAKKPSDQHGVMYDTL-------VNAMRAQIP---------- 107

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                 N++++ G+V    T       +V+ D   I    +VL  G
Sbjct: 108 -----PNVEIVYGKVVEVATSGERQR-LVLADGETISARLIVLANG 147


>gi|194334338|ref|YP_002016198.1| Thioredoxin-disulfide reductase [Prosthecochloris aestuarii DSM
           271]
 gi|194312156|gb|ACF46551.1| Thioredoxin-disulfide reductase [Prosthecochloris aestuarii DSM
           271]
          Length = 313

 Score = 45.3 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 41/161 (25%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     DV +IGGG AGC AA   A+    T +          +  +P  G LG  H++ 
Sbjct: 1   METLHCDVAIIGGGPAGCSAAIYTARADLDTVI----------IDKDPHAGALGMAHIIA 50

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
               +        D  G++    ++++     G R                        +
Sbjct: 51  NYPGMGN------DITGMELLE-SMRRHAGSFGAR-----------------------FM 80

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           + +V G +       ++     +M +   ++L TG+  +  
Sbjct: 81  KQKVNGIDVRNPE-KTVFTTSGTMFKAKALILATGSMGKSR 120


>gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 753

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V VIGGG AG EA+ + AK G    LI  K +  G M
Sbjct: 140 VAVIGGGIAGIEASLILAKAGIKVYLIEKKPTIGGHM 176


>gi|302527127|ref|ZP_07279469.1| sarcosine oxidase oxidoreductase [Streptomyces sp. AA4]
 gi|302436022|gb|EFL07838.1| sarcosine oxidase oxidoreductase [Streptomyces sp. AA4]
          Length = 955

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 60/198 (30%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G AG  AA  AA+ G    L+  +                             
Sbjct: 150 DVLVVGAGPAGLVAARTAARAGVRVVLVDDQPE------------------------PGG 185

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ----- 121
            L+G        ++  L     PAV   R  AD          E+ +  +++V+      
Sbjct: 186 SLLG------SNEYVDLK----PAVEWARAIAD----------ELRATPDVEVLDRTTAF 225

Query: 122 GEVAG--FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           G          ++  S    Q    IR    VL TG   R ++             D P 
Sbjct: 226 GAYDDGFVLAVQHRTSGAARQRVWRIRAQQTVLATGAHERPIVF---------PDNDRPG 276

Query: 180 NSLFNSFMKFDFDTGRLK 197
             L ++   +    G + 
Sbjct: 277 ILLASAARTYLHRYGVVP 294


>gi|15807510|ref|NP_296246.1| dihydrolipoamide dehydrogenase [Deinococcus radiodurans R1]
 gi|6460350|gb|AAF12067.1|AE002082_3 2-oxo acid dehydrogenase, lipoamide dehydrogenase E3 component
           [Deinococcus radiodurans R1]
          Length = 480

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 30/170 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
           ++DV+VIGGG AG  AA  AA+LG  TA +             P++GG     G      
Sbjct: 15  TFDVLVIGGGPAGYVAAIRAAQLGFKTACV----DAF-ERGGKPSLGGTCLNVGCIPSKA 69

Query: 61  EIDALDGLMGRVADAAGIQFRV----LNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +D+ +       D A    +V    ++V K  A +      D+    +A          
Sbjct: 70  LLDSSERFEMISHDTAEHGIQVAQPQIDVSKMLARK--DGVVDKLTGGVAFL-------- 119

Query: 117 LDVIQGEVAGFNTEKNIIS-----SIVMQDNSMIRCSTVVLTTGTFLRGV 161
               + +V  F+    ++       +V    + ++   V++ TG+  R +
Sbjct: 120 --FRKNKVTSFHGYGKLVRQDGQEWVVDAAGTEVKAKNVIVATGSNPRAL 167


>gi|16081459|ref|NP_393806.1| fixC protein related [Thermoplasma acidophilum DSM 1728]
 gi|10639499|emb|CAC11471.1| fixC protein related [Thermoplasma acidophilum]
          Length = 428

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DVIVIG G AG  AA   A+ G +  L+
Sbjct: 3  EFDVIVIGAGPAGSSAAIKLAQGGMNVLLV 32


>gi|298675070|ref|YP_003726820.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
 gi|298288058|gb|ADI74024.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
          Length = 384

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV++IG G AG  AA   A+ G  T LI   K        C   +       L  EI  
Sbjct: 2   YDVLIIGAGPAGTTAAKHTAEKGLDTLLIEKQKLPRK--KPCAGLVSQRALNSLEFEIPK 59

Query: 65  LDGLMGRVADAAGIQFR------VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              L+ R      I+++       L+   G  +   R + D  L + A ++     +N  
Sbjct: 60  H--LIKRYCYGTRIKYKNHVLESKLDRPVG--ILVSRDEFDYYLSQQATKKGAEILDNTS 115

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                V   N E + ++ +        +   V+   G
Sbjct: 116 -----VNSVNAENDYVA-VNTTKGL-FKARIVIGADG 145


>gi|296268271|ref|YP_003650903.1| geranylgeranyl reductase [Thermobispora bispora DSM 43833]
 gi|296091058|gb|ADG87010.1| geranylgeranyl reductase [Thermobispora bispora DSM 43833]
          Length = 424

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 65/188 (34%), Gaps = 31/188 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG  AA   AK G    L+  KT       C   +        V+E+ A+ 
Sbjct: 15  DVIVVGAGPAGSTAAFYLAKAGLDVLLLE-KTRFPREKVCGDGLTPR----SVKELVAMG 69

Query: 67  ------GLM---GRVADAAGIQFR--VLNVKKGPAVRGPRTQADREL----YRLAMQREI 111
                 G +   G     AG++F      +   P     RT+AD +     +       +
Sbjct: 70  VDIDAPGWIRNRGLRVYGAGLRFELDWPQLTSYPDFGLVRTRADFDEILARHAERAGARL 129

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLRGVIHIGK 166
           L + N+    G V   +     I+ +     +       R   V+   G   R  I +G 
Sbjct: 130 LEETNVT---GPV--LDERSGRITGV-TAKGADGAPQTFRAPLVIAADGNSSRLSIAMGL 183

Query: 167 LKIPAGRM 174
            K     M
Sbjct: 184 HKRADRPM 191


>gi|229917738|ref|YP_002886384.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Exiguobacterium sp. AT1b]
 gi|229469167|gb|ACQ70939.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Exiguobacterium sp. AT1b]
          Length = 474

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPAIGGLGKGHLVR 60
          + Y +IVIGGG AG   AA AA LGA  AL+       G    + C P+   +      +
Sbjct: 2  KDYQLIVIGGGAAGMTVAAGAANLGAKVALVEKNKHLGGDCLHVGCVPSKALIAAS---K 58

Query: 61 EIDALDGLMGRVADAAGIQF 80
          E +A    M R A   G +F
Sbjct: 59 EANA----MMRAARVLGTEF 74


>gi|91789143|ref|YP_550095.1| hypothetical protein Bpro_3283 [Polaromonas sp. JS666]
 gi|91698368|gb|ABE45197.1| HI0933-like protein [Polaromonas sp. JS666]
          Length = 416

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          + + +DV+VIG G AG   A +A +LG    L+ H    +  
Sbjct: 1  MTQKFDVMVIGAGAAGLFCAGIAGQLGLKVLLVDHS-EKVAE 41


>gi|319779461|ref|YP_004130374.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [Taylorella equigenitalis MCE9]
 gi|317109485|gb|ADU92231.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [Taylorella equigenitalis MCE9]
          Length = 475

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   +DV+VIG G  G  AA  AA+LG   A +   T   G     P  GG 
Sbjct: 1  MENKFDVVVIGAGPGGYIAAIRAAQLGKKVACVDMWTDDAG----KPKPGGT 48


>gi|317485234|ref|ZP_07944115.1| thioredoxin-disulfide reductase [Bilophila wadsworthia 3_1_6]
 gi|316923525|gb|EFV44730.1| thioredoxin-disulfide reductase [Bilophila wadsworthia 3_1_6]
          Length = 308

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + YD IV+GGG AG  AA    + G S A I  
Sbjct: 2  KHYDAIVVGGGPAGITAALYLCRSGISVAQIEM 34


>gi|242243481|ref|ZP_04797926.1| possible dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
           W23144]
 gi|242233101|gb|EES35413.1| possible dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
           W23144]
          Length = 469

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 20  MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 79

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 80  HSIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVAYIEGEARISKN 138

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 139 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 192

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 193 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 224


>gi|240102238|ref|YP_002958546.1| Thioredoxin reductase (trxB) [Thermococcus gammatolerans EJ3]
 gi|239909791|gb|ACS32682.1| Thioredoxin reductase (trxB) [Thermococcus gammatolerans EJ3]
          Length = 333

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 49/164 (29%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLVRE 61
            + +DV++IG G AG  AA  AA+ G  T +++      +          G  +G    E
Sbjct: 18  KKLWDVLIIGAGPAGFTAAIYAARFGLETLILSKDLGGNMALTDLIENYPGFPEGISGSE 77

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           + A      R+ +                    R   D                   ++ 
Sbjct: 78  LTA------RMHE-----------------HVKRLGVD-------------------IVF 95

Query: 122 GEVAGFN------TEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            EV   +       E     ++  ++    R  T+++  G   R
Sbjct: 96  DEVERIDPAECAYYEGPCKFTVKTKNGKEYRAKTIIIAVGAAPR 139


>gi|187934018|ref|YP_001884664.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Clostridium botulinum B str. Eklund 17B]
 gi|187722171|gb|ACD23392.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Clostridium botulinum B str. Eklund 17B]
          Length = 318

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG 51
           YD++VIGGG AG  AA  AA+ G    LI    H    I +   + A G
Sbjct: 3  EYDLVVIGGGIAGMTAALGAAREGIKNILIFEREHSLGGILNQCIHNAFG 52


>gi|169796364|ref|YP_001714157.1| putative FAD dependent oxidoreductase [Acinetobacter baumannii
          AYE]
 gi|213156900|ref|YP_002318945.1| FAD dependent oxidoreductase [Acinetobacter baumannii AB0057]
 gi|215483825|ref|YP_002326050.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii
          AB307-0294]
 gi|301347044|ref|ZP_07227785.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii AB056]
 gi|301512123|ref|ZP_07237360.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii AB058]
 gi|301596713|ref|ZP_07241721.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii AB059]
 gi|332851980|ref|ZP_08433847.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6013150]
 gi|332871711|ref|ZP_08440171.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6013113]
 gi|169149291|emb|CAM87174.1| putative FAD dependent oxidoreductase [Acinetobacter baumannii
          AYE]
 gi|213056060|gb|ACJ40962.1| FAD dependent oxidoreductase [Acinetobacter baumannii AB0057]
 gi|213989110|gb|ACJ59409.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii
          AB307-0294]
 gi|332729557|gb|EGJ60895.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6013150]
 gi|332731279|gb|EGJ62576.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6013113]
          Length = 384

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|255527095|ref|ZP_05393983.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|296187883|ref|ZP_06856276.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|255509197|gb|EET85549.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
 gi|296047504|gb|EFG86945.1| FAD dependent oxidoreductase [Clostridium carboxidivorans P7]
          Length = 463

 Score = 45.3 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG-LGKGHLVR 60
            YDV+++GGG  GC AA   +K   + ALI         +  ++C+    G  G+  L+ 
Sbjct: 2   DYDVLILGGGIVGCAAAYELSKYNLNIALIEKDYDIADDVALINCSVVYDGCEGEDTLIS 61

Query: 61  EIDALDG-LMGRVADAAGIQFR------VLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           ++  +   ++G+V+D   + F       V   +KG        +  + +Y  +++R I  
Sbjct: 62  KLQVMGNDIVGKVSDKFNVDFEKCGYLIVAEDEKGE-------EKLKNMYNTSIRRGIKE 114

Query: 114 QENLDVIQ--GEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLR 159
              LD  Q        N +         + ++   +  I    +    G   +
Sbjct: 115 IYLLDKEQVYEMEPNLNIDVRKALYSKNTGVISPYDLAIAYGEIAFDNGVNFK 167


>gi|329897434|ref|ZP_08272089.1| Glutathione reductase [gamma proteobacterium IMCC3088]
 gi|328921194|gb|EGG28596.1| Glutathione reductase [gamma proteobacterium IMCC3088]
          Length = 454

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YD+IVIG G  G  AA +AA LGA  A+I
Sbjct: 1  MGSNYDLIVIGAGSGGVRAARIAASLGAKVAII 33


>gi|227432413|ref|ZP_03914402.1| thioredoxin-disulfide reductase [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
 gi|227351816|gb|EEJ42053.1| thioredoxin-disulfide reductase [Leuconostoc mesenteroides subsp.
          cremoris ATCC 19254]
          Length = 317

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDV+VIG G AG  AA  A++   S  ++
Sbjct: 6  KEYDVVVIGAGPAGMTAATYASRANLSVLML 36


>gi|116617716|ref|YP_818087.1| thioredoxin reductase [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|116096563|gb|ABJ61714.1| Thioredoxin reductase [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 317

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDV+VIG G AG  AA  A++   S  ++
Sbjct: 6  KEYDVVVIGAGPAGMTAATYASRANLSVLML 36


>gi|238481725|gb|ACR43928.1| 3-keto-5 alpha-steroid delta(1)-dehydrogenase [Rhodococcus sp.
          CECT 3014]
          Length = 577

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YD++V+G G AG  AA  AA  G S  ++            + A  G G      
Sbjct: 4  MSKQEYDIVVVGSGAAGMTAALTAAHQGLSVVIV----EKAAHYGGSTARSGGGVWIPNN 59

Query: 61 EIDALDGL 68
          E    DG+
Sbjct: 60 EALQADGV 67


>gi|229494433|ref|ZP_04388196.1| 3-ketosteroid-delta1-dehydrogenase [Rhodococcus erythropolis
          SK121]
 gi|229318795|gb|EEN84653.1| 3-ketosteroid-delta1-dehydrogenase [Rhodococcus erythropolis
          SK121]
          Length = 577

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YD++V+G G AG  AA  AA  G S  ++            + A  G G      
Sbjct: 4  MSKQEYDIVVVGSGAAGMTAALTAAHQGLSVVIV----EKAAHYGGSTARSGGGVWIPNN 59

Query: 61 EIDALDGL 68
          E    DG+
Sbjct: 60 EALQADGV 67


>gi|226304226|ref|YP_002764184.1| 3-keto-5alpha-steroid delta(1)-dehydrogenase KstD3 [Rhodococcus
          erythropolis PR4]
 gi|226183341|dbj|BAH31445.1| 3-keto-5alpha-steroid delta(1)-dehydrogenase KstD3 [Rhodococcus
          erythropolis PR4]
          Length = 577

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YD++V+G G AG  AA  AA  G S  ++            + A  G G      
Sbjct: 4  MSKQEYDIVVVGSGAAGMTAALTAAHQGLSVVIV----EKAAHYGGSTARSGGGVWIPNN 59

Query: 61 EIDALDGL 68
          E    DG+
Sbjct: 60 EALQADGV 67


>gi|158605231|gb|ABW74859.1| 3-ketosteroid-delta1-dehydrogenase [Rhodococcus erythropolis]
          Length = 574

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  + YD++V+G G AG  AA  AA  G S  ++            + A  G G      
Sbjct: 1  MSKQEYDIVVVGSGAAGMTAALTAAHQGLSVVIV----EKAAHYGGSTARSGGGVWIPNN 56

Query: 61 EIDALDGL 68
          E    DG+
Sbjct: 57 EALQADGV 64


>gi|147678765|ref|YP_001212980.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
 gi|146274862|dbj|BAF60611.1| dehydrogenases [Pelotomaculum thermopropionicum SI]
          Length = 428

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 18/166 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           ++  ++V+++G G AG  AA + A  G    L                 GG    H +  
Sbjct: 1   MSDKFEVVIVGAGVAGSTAAYILASAGLEVLL----IERGNYAGSKNMTGGRLYSHSLNK 56

Query: 61  -----------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                      E       +  + + + I     + + G  +R       R  +   + +
Sbjct: 57  IIPNFAKEAPVERKITKEKVSLLTEDSAITLDYHSSRLGGNLR-DSYSVLRGEFDQWLAQ 115

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +      +      V    T    +  +       I    VVL  G
Sbjct: 116 KAEEAGAVLAAGVRVDELLTNNGKVVGVK-AGEDEIEADVVVLADG 160


>gi|146282240|ref|YP_001172393.1| dihydrolipoamide dehydrogenase [Pseudomonas stutzeri A1501]
 gi|145570445|gb|ABP79551.1| lipoamide dehydrogenase-glc [Pseudomonas stutzeri A1501]
 gi|327480488|gb|AEA83798.1| dihydrolipoamide dehydrogenase [Pseudomonas stutzeri DSM 4166]
          Length = 478

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG  TA I
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACI 33


>gi|114327910|ref|YP_745067.1| soluble pyridine nucleotide transhydrogenase [Granulibacter
          bethesdensis CGDNIH1]
 gi|114316084|gb|ABI62144.1| soluble pyridine nucleotide transhydrogenase [Granulibacter
          bethesdensis CGDNIH1]
          Length = 496

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YD+IVIG G AG  AA  AAKLG +  ++
Sbjct: 13 DQIYDLIVIGSGPAGRRAAIQAAKLGHTVLVV 44


>gi|15891204|ref|NP_356876.1| putative FAD-binding dehydrogenase [Agrobacterium tumefaciens
          str. C58]
 gi|15159563|gb|AAK89661.1| conserved hypothetical protein [Agrobacterium tumefaciens str.
          C58]
          Length = 547

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDVIV+G G AG  AA  AA+ G S  ++
Sbjct: 2  ERYDVIVVGAGLAGLVAATEAAERGFSVCVV 32


>gi|77457843|ref|YP_347348.1| dihydrolipoamide dehydrogenase [Pseudomonas fluorescens Pf0-1]
 gi|77381846|gb|ABA73359.1| dihydrolipoyl dehydrogenase [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +DV+VIG G  G  AA  AA+LG STA                A+GG 
Sbjct: 1  MSQKFDVVVIGAGPGGYVAAIKAAQLGLSTAC----IEKYTDAEGKQALGGT 48


>gi|27467171|ref|NP_763808.1| dihydrolipoamide dehydrogenase [Staphylococcus epidermidis ATCC
           12228]
 gi|251811584|ref|ZP_04826057.1| possible dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293367432|ref|ZP_06614090.1| TPP-dependent acetoin dehydrogenase complex [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27314713|gb|AAO03850.1|AE016744_253 dihydrolipoamide dehydrogenase [Staphylococcus epidermidis ATCC
           12228]
 gi|251804962|gb|EES57619.1| possible dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291318378|gb|EFE58766.1| TPP-dependent acetoin dehydrogenase complex [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 469

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 20  MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 79

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 80  HSIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVTYIEGEARISKN 138

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 139 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 192

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 193 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 224


>gi|21221885|ref|NP_627664.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|6491822|emb|CAB61868.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 505

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          + YD++VIGGG AG  AA  A +LGA T L+      +G       C P+
Sbjct: 38 KRYDLVVIGGGSAGLTAARTAGRLGARTLLVE--RDRLGGDCLWTGCVPS 85


>gi|117924751|ref|YP_865368.1| dihydrolipoamide dehydrogenase [Magnetococcus sp. MC-1]
 gi|117608507|gb|ABK43962.1| dihydrolipoamide dehydrogenase [Magnetococcus sp. MC-1]
          Length = 464

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGH 57
           M+   +D+IVIG G  G  AA  AA+LG S   I       G+     C P    L   H
Sbjct: 1   MMATIWDLIVIGAGPGGYPAAIRAAQLGLSVLCIEKSPHPGGTCLNAGCIPTKALLASTH 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           L  +I     L G       +    +  +K   V   R+              +  +  +
Sbjct: 61  LYTQIRDQADLHGIEITTMQVNLARMQGRKERVVSQLRSGI----------LGLFKKYGV 110

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            ++  E     +    I+  +      ++   ++L TG
Sbjct: 111 TLLHDEA--IVSGPGQIT--LAASGETLQAKAILLATG 144


>gi|125974465|ref|YP_001038375.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Clostridium thermocellum ATCC 27405]
 gi|125714690|gb|ABN53182.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Clostridium thermocellum ATCC 27405]
          Length = 509

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCN--PAI 50
              +DV+VIGGG AG  +A  AA+ G  T +I          T       S+     P +
Sbjct: 206 KEPFDVLVIGGGPAGVSSAIYAARKGLRTGIIAERFGGQILDTLGIENFISVPYTEGPKL 265

Query: 51  GGLGKGHLVR 60
               K H+ R
Sbjct: 266 AENFKEHVKR 275


>gi|229916604|ref|YP_002885250.1| thioredoxin reductase [Exiguobacterium sp. AT1b]
 gi|229468033|gb|ACQ69805.1| thioredoxin reductase [Exiguobacterium sp. AT1b]
          Length = 317

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA  A++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAALYASRANLSTLMI 35


>gi|163747455|ref|ZP_02154807.1| sarcosine oxidase, alpha subunit family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161379308|gb|EDQ03725.1| sarcosine oxidase, alpha subunit family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 978

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 2   INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH- 57
             ++Y   D++VIG G AG  AA  AA+ GA   L        G ++C     G   GH 
Sbjct: 159 YEKAYAFCDLLVIGAGPAGLMAALTAARSGADVILADEDAPMGGRLNCESERIGGQPGHA 218

Query: 58  ----LVREIDALDGL 68
               +V E+ A+D +
Sbjct: 219 WAAGVVAELAAMDNV 233


>gi|322516154|ref|ZP_08069087.1| thioredoxin reductase [Streptococcus vestibularis ATCC 49124]
 gi|322125330|gb|EFX96685.1| thioredoxin reductase [Streptococcus vestibularis ATCC 49124]
          Length = 306

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IVIG G AG  AA  AA+     A +  
Sbjct: 2  YDTIVIGAGPAGMTAALYAARANLKVATLEQ 32


>gi|317471782|ref|ZP_07931121.1| thioredoxin reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900759|gb|EFV22734.1| thioredoxin reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 135

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           YDVI+ GGG +G  AA  AA+ G S  +       +          G G+ +L   
Sbjct: 2  KYDVIIAGGGASGMTAAITAARRGCSVLV----LERMDRPGKKILATGNGRCNLTNS 54


>gi|308049828|ref|YP_003913394.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ferrimonas balearica DSM 9799]
 gi|307632018|gb|ADN76320.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ferrimonas balearica DSM 9799]
          Length = 559

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            + +DV+V+G G +G  AA  AA+ GA  A++
Sbjct: 88  TQRFDVVVVGAGASGVPAALSAAENGAKVAVL 119


>gi|300856512|ref|YP_003781496.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
 gi|300436627|gb|ADK16394.1| enoate reductase [Clostridium ljungdahlii DSM 13528]
          Length = 667

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVREID 63
           DV+++GGG  GCEAA   AK G +  ++  K    ++   +     I  +   ++     
Sbjct: 528 DVLMVGGGLVGCEAALYLAKQGKNVTIVEAKDTLLNSSKPIPHMNKIMLIDLLNMYNVKA 587

Query: 64  ALDGLMGRVADAAG----IQFRVLNVKKGPAVRGPRTQADRELYRL 105
             +  +  V D        +F+   V           ++DRELY  
Sbjct: 588 ITNNSLLEVTDKGAVLINNKFKKQEVSADTVTIAVGFKSDRELYNK 633


>gi|228477275|ref|ZP_04061913.1| thioredoxin-disulfide reductase [Streptococcus salivarius SK126]
 gi|228251294|gb|EEK10465.1| thioredoxin-disulfide reductase [Streptococcus salivarius SK126]
          Length = 306

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IVIG G AG  AA  AA+     A +  
Sbjct: 2  YDTIVIGAGPAGMTAALYAARANLKVATLEQ 32


>gi|225020595|ref|ZP_03709787.1| hypothetical protein CORMATOL_00602 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946541|gb|EEG27750.1| hypothetical protein CORMATOL_00602 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 479

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--SCNPA---IGGLGKGHLVREI 62
           +++IGGG AG EAA V A+ GA   LI        ++   C P+   I G      +R  
Sbjct: 9   IVIIGGGPAGYEAALVGARYGADITLIEDNGLGGSAVIDDCVPSKSFIAGANVKTDLRRA 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
           + +   M    DAAG     L       VR    +   ++YR
Sbjct: 69  EDMGLNMKLAEDAAGAGSTRLVTALNGRVRQLAGKQSNDIYR 110


>gi|218755319|ref|ZP_03534115.1| 3-ketosteroid-delta-1-dehydrogenase [Mycobacterium tuberculosis
          GM 1503]
          Length = 285

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + +DV+V+G G AG  AA VAA  G ST ++
Sbjct: 1  MTVQEFDVVVVGSGAAGMVAALVAAHRGLSTVVV 34


>gi|218283583|ref|ZP_03489555.1| hypothetical protein EUBIFOR_02145 [Eubacterium biforme DSM 3989]
 gi|218215732|gb|EEC89270.1| hypothetical protein EUBIFOR_02145 [Eubacterium biforme DSM 3989]
          Length = 304

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKG 56
          + R YD+++IG G AG  AA   ++ G  T ++       K      +S  P +  +   
Sbjct: 1  MERQYDLVIIGAGPAGLSAALYGSRAGLKTLILENGAPGGKLIKTNKISNYPGVKEIEGT 60

Query: 57 HLVREI 62
           L  ++
Sbjct: 61 QLAMDM 66


>gi|254425546|ref|ZP_05039263.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Synechococcus sp. PCC 7335]
 gi|196187969|gb|EDX82934.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Synechococcus sp. PCC 7335]
          Length = 325

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YDV++IGGG AG  AA  AA+    T ++    
Sbjct: 17 YDVVIIGGGPAGLSAAIYAARANLKTVVLDKNP 49


>gi|195018861|ref|XP_001984860.1| GH16714 [Drosophila grimshawi]
 gi|193898342|gb|EDV97208.1| GH16714 [Drosophila grimshawi]
          Length = 644

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YD IVIG G AG       A+ G  TA+++
Sbjct: 35 IIDHKYDAIVIGAGGAGMRCGFELARHGFKTAMLS 69


>gi|167746969|ref|ZP_02419096.1| hypothetical protein ANACAC_01681 [Anaerostipes caccae DSM 14662]
 gi|167653929|gb|EDR98058.1| hypothetical protein ANACAC_01681 [Anaerostipes caccae DSM 14662]
          Length = 407

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           YDVI+ GGG +G  AA  AA+ G S  +       +          G G+ +L   
Sbjct: 2  KYDVIIAGGGASGMTAAITAARRGCSVLV----LERMDRPGKKILATGNGRCNLTNS 54


>gi|91201310|emb|CAJ74370.1| similar to phytoene dehydrogenase (phytoene desaturase)
          [Candidatus Kuenenia stuttgartiensis]
          Length = 489

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          SYDVIVIG G AG   AA  AK G    LI   
Sbjct: 22 SYDVIVIGAGIAGLICAAFLAKSGKKALLIEQH 54


>gi|50550323|ref|XP_502634.1| YALI0D09867p [Yarrowia lipolytica]
 gi|74634692|sp|Q6C9M8|KMO_YARLI RecName: Full=Kynurenine 3-monooxygenase; AltName:
           Full=Biosynthesis of nicotinic acid protein 4; AltName:
           Full=Kynurenine 3-hydroxylase
 gi|49648502|emb|CAG80822.1| YALI0D09867p [Yarrowia lipolytica]
          Length = 463

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 21/132 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA 64
           ++V V+G G  GC AA   A  G   AL   +          N ++  +      R I+A
Sbjct: 2   HEVTVVGAGLVGCLAALAFADRGHKVALYDARPDLRSEAELKNASLRSINLAVSARGIEA 61

Query: 65  LDGLMGRVADAAGIQF-----RVLNVKKGPAVRGPRTQA-----------DRELYRLAMQ 108
           L  +  ++A+           R+++  +G    G   QA           DR      M 
Sbjct: 62  LRSVDTKMAERVLADIIPMYGRMIHDLQG----GQHAQAYGLWGECINSIDRAQLNRTML 117

Query: 109 REILSQENLDVI 120
             I    N+   
Sbjct: 118 DVIEDNANITFF 129


>gi|55821626|ref|YP_140068.1| thioredoxin reductase [Streptococcus thermophilus LMG 18311]
 gi|55823554|ref|YP_141995.1| thioredoxin reductase [Streptococcus thermophilus CNRZ1066]
 gi|116628339|ref|YP_820958.1| thioredoxin reductase [Streptococcus thermophilus LMD-9]
 gi|55737611|gb|AAV61253.1| thioredoxin reductase [Streptococcus thermophilus LMG 18311]
 gi|55739539|gb|AAV63180.1| thioredoxin reductase [Streptococcus thermophilus CNRZ1066]
 gi|116101616|gb|ABJ66762.1| Thioredoxin reductase [Streptococcus thermophilus LMD-9]
 gi|312278965|gb|ADQ63622.1| Thioredoxin reductase [Streptococcus thermophilus ND03]
          Length = 306

 Score = 45.3 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IVIG G AG  AA  AA+     A +  
Sbjct: 2  YDTIVIGAGPAGMTAALYAARANLKVATLEQ 32


>gi|332704170|ref|ZP_08424258.1| HI0933 family protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332554319|gb|EGJ51363.1| HI0933 family protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 393

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 120/418 (28%), Gaps = 67/418 (16%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+G G +G   A  AAK G   A+        G       + G GK +        
Sbjct: 9   YDVLVLGAGASGLMCAMEAAKRGRRVAV----LDHAGKAGRKLRLTGGGKCNFT------ 58

Query: 66  DGLMGRVADAAGIQFRVLNVK--KGPAVRGPRTQADRELYRLAMQREILSQENLDVI--Q 121
                   D +   +   N    K    R  +  A   L    +  E      L  +   
Sbjct: 59  ------NLDVSAANYVSANPHFCKSALARFDQYAAMEMLSSHGIAWEEREHGRLFCLGSA 112

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           GEVAG  T       + +  +  IR       L      +GV     L +  G       
Sbjct: 113 GEVAGLLTTLCHRQGVDILLDCTIREVDREQGLFRAATSQGVFLTPSLVVATGSPAWPQV 172

Query: 180 NSL---FNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNR 236
            +          F      ++      +  K   W                  T ++ +R
Sbjct: 173 GATRLGLEIARHFGLPVMPVRPALAPLVMAK--DWPLAGLAGISLP------ATAQVADR 224

Query: 237 QIECGITRTNL--------ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER 288
                +  T+         +        ++ S  +  +++        S+ D+ V+    
Sbjct: 225 SFSDHLLFTHEGLSGPAALQVSLFWRPGLEVSINFLPELQLVDFL--ASLPDRKVKLRNA 282

Query: 289 NGHQIFLE----PEGLNTDVVYPNGIS-----TALPEEIQHQFIR-TIPGLEKVNIIRPG 338
               +                    +S     TA+      +    +I G  K  +   G
Sbjct: 283 LSRVLPARLAAALCSAELGDKTVANLSRAEQETAVASVHSFRVTPLSIEGFAKAEVAAGG 342

Query: 339 YAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINS 389
                  ++ +EL   T+E  ++ GL+  G++   TG         A A G  AG + 
Sbjct: 343 -------VDTRELSSKTMEAAQMPGLYFIGEVLDVTGMLGGYNLQWAWASGFAAGQHV 393


>gi|282889861|ref|ZP_06298400.1| hypothetical protein pah_c004o281 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281500435|gb|EFB42715.1| hypothetical protein pah_c004o281 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 485

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   + D+ VIG G AG +AA  AAKLG    +       +     N    G      +R
Sbjct: 19 MEQINVDLAVIGAGPAGQKAAIQAAKLGKKVVV----IEKLPEPGGNCLFSGTIPSKTLR 74

Query: 61 E 61
          E
Sbjct: 75 E 75


>gi|159044658|ref|YP_001533452.1| sarcosine oxidase subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157912418|gb|ABV93851.1| sarcosine oxidase subunit alpha [Dinoroseobacter shibae DFL 12]
          Length = 1000

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 33/241 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G +G  AA  A + G+   L+       G++   P++   G         A +
Sbjct: 171 DVLVVGSGPSGIAAALTAGRAGSKVVLVDENAEMGGTLLSEPSVSIDG-------QPAWE 223

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L G +A+      R+ NV+     R  RT A    Y   M   +     L     E+  
Sbjct: 224 WLEGAMAELD----RMPNVR-----RMTRTTA-MGYYHQNMIGMVEK---LTDHMAEIPE 270

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
                        +    +R   VVL  G   R ++  G      G +    + +  N F
Sbjct: 271 ---------GAPRERMWRVRAREVVLAQGAIERPMVFDGNDTP--GILMAGAAQTFLNRF 319

Query: 187 MKFDFDTGRLKTGTPA--RLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                 +  + T   +             +     D R      + D+   R ++  +  
Sbjct: 320 GVLVGKSPVVLTSHDSAWYSAFDMADAGASVVAIVDTRNDVSQALRDEAQARGLKTYLGY 379

Query: 245 T 245
           T
Sbjct: 380 T 380


>gi|324994275|gb|EGC26189.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK678]
 gi|325697884|gb|EGD39768.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK160]
          Length = 391

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KYFDTIIIGGGPAGMMAAISSSFHGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDN--------SMIRCSTVVLTTG 155
           E L+    E+ G       I S+   DN            C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKNDNLFTIRSSDQTWTCQKLIVTTG 163


>gi|159042257|ref|YP_001541509.1| geranylgeranyl reductase [Caldivirga maquilingensis IC-167]
 gi|157921092|gb|ABW02519.1| geranylgeranyl reductase [Caldivirga maquilingensis IC-167]
          Length = 459

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YDV+++G G AG  AA + AK G S AL+  K +         AIG      L + 
Sbjct: 1   MYKTYDVLIVGAGTAGSYAAYLMAKQGLSVALVERKRAEEVFKVTGDAIGKHHIEELTKS 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             ++   +  +       +      K   V G     D   +   +     +    D+I 
Sbjct: 61  GLSISNDVFMIKYEGAELYSPDLSIKYF-VAGEGYGLDIGKWAQWLINA-ANNSGADIID 118

Query: 122 G-EVAGFNTEKNIISSIVMQ----DNSMIRCSTVVLTTGT 156
              V+    E   +  +           +R    V  +G 
Sbjct: 119 NHTVSTPIIEGGFVKGVKASRRDGTQVELRAKVTVDASGA 158


>gi|329724093|gb|EGG60615.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU144]
          Length = 450

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 61  HSIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVTYIEGEARISKN 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 120 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 173

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 174 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 205


>gi|318040409|ref|ZP_07972365.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CB0101]
          Length = 480

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G  TA+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLRTAIIE-SRDMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 66 LADAEHLKGFGIHAAPVRFE 85


>gi|290968042|ref|ZP_06559591.1| FAD dependent oxidoreductase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781948|gb|EFD94527.1| FAD dependent oxidoreductase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 465

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 137/477 (28%), Gaps = 104/477 (21%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YDVI+IG G AG   A   A  G    ++         ++     G   +  +   + 
Sbjct: 7   QTYDVIIIGAGPAGIFTALELADKGLRILIVEKGQDIAERLATAHNPGARKEDKMRNVVS 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVR---GPRTQADRELYRLAMQ-------REILS 113
              G     A A       L  + G  +      R   D+  Y   +        R++  
Sbjct: 67  GWGG-----AGAFSDGKLTLTTEYGGNLDEYMSKRELMDKIQYVDRVYCRFGGQDRKVYG 121

Query: 114 QENLDVI-----QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF----------- 157
           +EN   I     Q   A        I  +    N+ I  +      G             
Sbjct: 122 EENEAAIRQLQRQATAAELRLIPARIRHLGTDVNAEILTAMRAYLEGKAHIAANTAVEHI 181

Query: 158 -----LRGVIHIGKLKIPAGRMGDSPSNSLFNSF----MKFDF---------------DT 193
                    + IG     A  +  +P       F     K                    
Sbjct: 182 VVKEGTAAGVMIGDQWYAAPYVVAAPGREGSEWFVGEAEKLGLKFTSNAVDIGVRVEMPA 241

Query: 194 GRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI---------ECGITR 244
             L+  T    + K I + K      D+R+  F          +               +
Sbjct: 242 EVLEPITDIVYESKLIYFSKF----FDDRVRTFCMNPYGFVVEENNDGLLTVNGHSYAHK 297

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIED---------KIVRFGE-RNGHQIF 294
            +  T+  I+ + K +  +   IK     Y   I D          + R G+  +G +  
Sbjct: 298 KSENTNFAILVSKKFTEPFHEPIK-----YGKFIADLANILGGGVMVQRLGDLLDGRRST 352

Query: 295 LEPEGLN------TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YA 340
           +E           T  V P  +S  LP          +  L+KV    PG        Y 
Sbjct: 353 VERIQRGLVRPTLTKAV-PGDLSLVLPYRHLQDIKEMLEALDKVA---PGANSRHTLLYG 408

Query: 341 IEYDYINPKE-LFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNK 395
            E  + + +  L P LET  I   F  G   G T G  +A+  G+  G    +++  
Sbjct: 409 AEVKFYSSRLALSPQLET-AIPNFFAIGDGAGITRGLVQASVAGVTVGQEILKRAQH 464


>gi|265751332|ref|ZP_06087395.1| NAD-utilizing dehydrogenase [Bacteroides sp. 3_1_33FAA]
 gi|263238228|gb|EEZ23678.1| NAD-utilizing dehydrogenase [Bacteroides sp. 3_1_33FAA]
          Length = 547

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKIDIARISREHKVDSESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDVIQ--GEV------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +I+  GEV           EKN I+ I        +   V+L TG   R V 
Sbjct: 199 NMRN-TIIECGGEVHFKTRMDSLIIEKNKITGIETNTGKTFKGP-VILATGHSARDVY 254


>gi|289581195|ref|YP_003479661.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
 gi|289530748|gb|ADD05099.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
          Length = 495

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 19/205 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLV 59
           M+   YDVIV+GGG AGC AAA AA  G     +  K     G ++C  AI         
Sbjct: 1   MVRNQYDVIVVGGGIAGCFAAATAAAEGIDVVQLERKPREQGGFIACGDAIKSPRDPQNY 60

Query: 60  R---EIDALDGLMGRVADAAGIQF----RVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
               ++DA+      + D    Q       L V+K    +      DR  +     R + 
Sbjct: 61  PGPIDMDAIADDEAVLVDNNIDQIEYWDEELGVRKVLPYKDSSNVVDRYEFGQ---RLLE 117

Query: 113 SQENLDVIQ--GEVAGFNTEKNIISSIV-MQDNS--MIRCSTVVLTTG--TFLRGVIHIG 165
              +  V Q    V    T+   ++ +  ++D       C  ++   G  + L+ ++   
Sbjct: 118 QAADCGVEQHYDTVVNEVTQNGQVTGVKAVRDGEPVTYECDVLIDAAGAQSILQDMVSFE 177

Query: 166 KLKIPAGRMGDSPSN-SLFNSFMKF 189
            L  P     + P      +++ + 
Sbjct: 178 DLDTPGEPTFEVPHYTHFGSAYREI 202


>gi|256005179|ref|ZP_05430147.1| alkyl hydroperoxide reductase, F subunit [Clostridium thermocellum
           DSM 2360]
 gi|281418992|ref|ZP_06250010.1| alkyl hydroperoxide reductase, F subunit [Clostridium thermocellum
           JW20]
 gi|255990833|gb|EEU00947.1| alkyl hydroperoxide reductase, F subunit [Clostridium thermocellum
           DSM 2360]
 gi|281407449|gb|EFB37709.1| alkyl hydroperoxide reductase, F subunit [Clostridium thermocellum
           JW20]
 gi|316941602|gb|ADU75636.1| alkyl hydroperoxide reductase, F subunit [Clostridium thermocellum
           DSM 1313]
          Length = 509

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCN--PAI 50
              +DV+VIGGG AG  +A  AA+ G  T +I          T       S+     P +
Sbjct: 206 KEPFDVLVIGGGPAGVSSAIYAARKGLRTGIIAERFGGQILDTLGIENFISVPYTEGPKL 265

Query: 51  GGLGKGHLVR 60
               K H+ R
Sbjct: 266 AENFKEHVKR 275


>gi|193077036|gb|ABO11791.2| hypothetical protein A1S_1363 [Acinetobacter baumannii ATCC
          17978]
          Length = 384

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|229918343|ref|YP_002886989.1| succinate dehydrogenase flavoprotein subunit [Exiguobacterium sp.
          AT1b]
 gi|229469772|gb|ACQ71544.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Exiguobacterium sp. AT1b]
          Length = 585

 Score = 45.3 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N+S  +IVIGGG AG  A   +A++G    L +          C    G  G  +   
Sbjct: 1  MANQS--LIVIGGGLAGLMATIKSAEMGVPVKLFSLVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61 EID 63
          E D
Sbjct: 58 EGD 60


>gi|329897263|ref|ZP_08272001.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [gamma proteobacterium IMCC3088]
 gi|328921259|gb|EGG28655.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase
          [gamma proteobacterium IMCC3088]
          Length = 478

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +++ +DV+VIG G AG  AA  AA+LG STA +       G++
Sbjct: 1  MSKKFDVVVIGSGPAGYVAAIKAAQLGFSTACVERWVDESGAV 43


>gi|323141848|ref|ZP_08076712.1| pyridine nucleotide-disulfide oxidoreductase
          [Phascolarctobacterium sp. YIT 12067]
 gi|322413688|gb|EFY04543.1| pyridine nucleotide-disulfide oxidoreductase
          [Phascolarctobacterium sp. YIT 12067]
          Length = 290

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+ VIGGG AG  AA  AA  G    L 
Sbjct: 2  DYDIAVIGGGPAGVSAAITAASKGRKVVLF 31


>gi|296877046|ref|ZP_06901087.1| thioredoxin-disulfide reductase [Streptococcus parasanguinis ATCC
           15912]
 gi|296431907|gb|EFH17713.1| thioredoxin-disulfide reductase [Streptococcus parasanguinis ATCC
           15912]
          Length = 303

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 43/156 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D +++G G AG  AA  AA+     ALI                          E    
Sbjct: 2   FDTVIVGAGPAGMTAALYAARSNLKVALI--------------------------ERGIP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   +D       + N      + GP            M   + +     +  G+V 
Sbjct: 36  GGQMNNTSD-------IENYPGYANISGPDLA-------EKMFEPLENLGVEHLF-GQVE 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
               E   ++  ++ D+      TVV+ TG+  R +
Sbjct: 81  RI--EDLGVTKKIVTDDGEYEAKTVVIATGSNHRSL 114


>gi|296103865|ref|YP_003614011.1| glucose-methanol-choline oxidoreductase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058324|gb|ADF63062.1| glucose-methanol-choline oxidoreductase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 563

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 104 RLAMQREILSQENLDVIQGEVAG-FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
              + R++  + NL ++ G +      E+N +  + + D         +L+ G +    I
Sbjct: 217 MAWLTRKVRQRPNLTIVYGALTDKLIVEENRVKGVQLADGKQCFARQTILSAGAYGSAAI 276


>gi|290962418|ref|YP_003493600.1| hypothetical protein SCAB_81131 [Streptomyces scabiei 87.22]
 gi|260651944|emb|CBG75074.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 427

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-------MSCNPAI 50
          DV+VIGGG +G   A  AA+ GA   L+      +GS         CNP I
Sbjct: 27 DVVVIGGGLSGLSTAYHAARKGARVVLVE--KDQVGSGASGRNGSHCNPGI 75


>gi|219871828|ref|YP_002476203.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Haemophilus parasuis SH0165]
 gi|219692032|gb|ACL33255.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Haemophilus parasuis SH0165]
          Length = 390

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT----STIGSMSCNPAIGGLGKGHLVREI 62
           DVIVIGGG  G   A   AKLG    LI                  +   +    L+ ++
Sbjct: 5   DVIVIGGGMVGAATALGLAKLGLKVVLIEKNPLPAFDPNAPYDVRISAISVASVALLEKL 64

Query: 63  DALDG-LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA-------MQREILSQ 114
            A       RV    G++   ++     A        D+  Y +        + + +   
Sbjct: 65  GAWQAIESMRVCPYDGLETWEID-GFNTAFHANDLGLDKLGYMVENNLIQLGLWQALAQY 123

Query: 115 ENL-DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            N    +  E    + ++N + ++ + D  +     ++   G 
Sbjct: 124 PNCQQAVGFEQISASRDENGVWTVEL-DQQVFSAPLLIACDGA 165


>gi|210610031|ref|ZP_03288210.1| hypothetical protein CLONEX_00396 [Clostridium nexile DSM 1787]
 gi|210152642|gb|EEA83648.1| hypothetical protein CLONEX_00396 [Clostridium nexile DSM 1787]
          Length = 667

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + +S +V+VIGGG AG EAA  AA++G +T LI  K
Sbjct: 380 VKKSCNVVVIGGGTAGLEAACTAAEVGCTTFLIEKK 415


>gi|328955556|ref|YP_004372889.1| Thioredoxin-disulfide reductase [Coriobacterium glomerans PW2]
 gi|328455880|gb|AEB07074.1| Thioredoxin-disulfide reductase [Coriobacterium glomerans PW2]
          Length = 314

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVIVIGGG AG  AA  AA+ G +  ++  
Sbjct: 8  DVIVIGGGPAGFSAAIYAARAGLNVLVLEQ 37


>gi|315222009|ref|ZP_07863920.1| alkyl hydroperoxide reductase, F subunit [Streptococcus anginosus
           F0211]
 gi|315188975|gb|EFU22679.1| alkyl hydroperoxide reductase, F subunit [Streptococcus anginosus
           F0211]
          Length = 518

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
              +DV+V+GGG AG  AA  AA+ G  T ++ 
Sbjct: 214 KEPFDVLVVGGGPAGNSAAIYAARKGIRTGMVV 246


>gi|160942411|ref|ZP_02089719.1| hypothetical protein CLOBOL_07296 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434775|gb|EDP12542.1| hypothetical protein CLOBOL_07296 [Clostridium bolteae ATCC
           BAA-613]
          Length = 636

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+V+G G AG EAA  AA  G +  L   
Sbjct: 378 VVVVGAGIAGMEAAWTAAARGHAVELFEQ 406


>gi|77920256|ref|YP_358071.1| putative phytoene dehydrogenase [Pelobacter carbinolicus DSM
          2380]
 gi|77546339|gb|ABA89901.1| putative phytoene dehydrogenase [Pelobacter carbinolicus DSM
          2380]
          Length = 495

 Score = 45.3 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+V GGG AG  AA   A+ G    L+
Sbjct: 2  KYDVVVAGGGCAGMSAAITLARFGRKVLLV 31


>gi|281411501|ref|YP_003345580.1| thioredoxin reductase [Thermotoga naphthophila RKU-10]
 gi|281372604|gb|ADA66166.1| thioredoxin reductase [Thermotoga naphthophila RKU-10]
          Length = 317

 Score = 44.9 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD++V+GGG AG  +A  A + G S                           LV E
Sbjct: 14  IKDKYDIVVVGGGPAGLTSAIYARRAGLSV--------------------------LVVE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G +        +   V N    PA+ G    +  + +              D+  
Sbjct: 48  KAIEGGYV-------NLTHLVENYPGFPAISGEELASKFKEHAEKFGA--------DIYN 92

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EV       +    + + D   I    V++ TG 
Sbjct: 93  AEVVKLEVLGDK-KVVELDDGKRIEAPVVIVATGA 126


>gi|297201620|ref|ZP_06919017.1| electron transfer oxidoreductase [Streptomyces sviceus ATCC 29083]
 gi|197711009|gb|EDY55043.1| electron transfer oxidoreductase [Streptomyces sviceus ATCC 29083]
          Length = 428

 Score = 44.9 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 49/168 (29%), Gaps = 19/168 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   AK G    L+  KT       C   +       LV     + 
Sbjct: 11  DVIVVGAGPAGSTTAYHLAKSGLDVLLLE-KTEFPREKVCGDGLTPRATKQLVAMGIDIS 69

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +           +Q     +   P   +   R   D +L R A +      E 
Sbjct: 70  EEAGWLRNKGLRIIGGGVRLQLDWPELASFPDYGLVRKRDDFDEQLARQAQKAGARLYER 129

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
            +V    V         I+ +  +              VV   G   R
Sbjct: 130 CNVGAPIVDD---RTGRITGVHAKLGEEKREVTFHAPLVVAADGNSTR 174


>gi|170287865|ref|YP_001738103.1| thioredoxin reductase [Thermotoga sp. RQ2]
 gi|170175368|gb|ACB08420.1| thioredoxin reductase [Thermotoga sp. RQ2]
          Length = 317

 Score = 44.9 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD++V+GGG AG  +A  A + G S                           LV E
Sbjct: 14  IKDKYDIVVVGGGPAGLTSAIYARRAGLSV--------------------------LVVE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G +        +   V N    PA+ G    +  + +              D+  
Sbjct: 48  KAIEGGYV-------NLTHLVENYPGFPAISGEELASKFKEHAEKFGA--------DIYN 92

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            EV       +    + + D   I    V++ TG 
Sbjct: 93  AEVVKLEVLGDK-KVVELDDGKRIEAPVVIVATGA 126


>gi|18406296|ref|NP_564734.1| XF1; squalene monooxygenase [Arabidopsis thaliana]
 gi|6566342|dbj|BAA88268.1| XF1 [Arabidopsis thaliana]
 gi|18181937|dbj|BAB83875.1| squalene monooxygenase [Arabidopsis thaliana]
 gi|20466354|gb|AAM20494.1| squalene monooxygenase, putative [Arabidopsis thaliana]
 gi|23198062|gb|AAN15558.1| squalene monooxygenase, putative [Arabidopsis thaliana]
 gi|332195428|gb|AEE33549.1| squalene monooxygenase [Arabidopsis thaliana]
          Length = 531

 Score = 44.9 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 8/139 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K      +I         I      P     +  LG    V
Sbjct: 62  DVIVVGAGVAGSALAYTLGKDKRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGIEDCV 121

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   + G      G + R+    +               +   M+ +  S  N+ +
Sbjct: 122 EEIDAQ-RVYGYALFKNGKRIRLAYPLEKFHEDVSGRSFHNGRFIQRMREKAASLPNVQL 180

Query: 120 IQGEVAGFNTEKNIISSIV 138
            QG V     E   I  + 
Sbjct: 181 EQGTVLSLLEENGTIKGVR 199


>gi|296166494|ref|ZP_06848925.1| NADH oxidase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898106|gb|EFG77681.1| NADH oxidase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 684

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIGGG AG EAA VAA+ G    L 
Sbjct: 387 VVVIGGGPAGLEAARVAAERGHRVTLF 413


>gi|260775047|ref|ZP_05883946.1| NAD(FAD)-utilizing dehydrogenase [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260608964|gb|EEX35124.1| NAD(FAD)-utilizing dehydrogenase [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV+VIG G AG   AA A K G    ++ H
Sbjct: 1  MAEKFDVVVIGAGAAGLMCAAEAGKRGRKVLVLDH 35


>gi|259483613|tpe|CBF79147.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 647

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 39/175 (22%)

Query: 1   MIN--RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M+N      V+V+GGG AG  AA+  A+ G    L+              ++    + H 
Sbjct: 1   MMNVPEKCKVLVVGGGPAGSYAASALAREGIDVVLLE--AEKFPRYHIGESMLPSMR-HF 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL- 117
           ++ IDA D       DA G      N+KKG A            +RL   R     + + 
Sbjct: 58  LKFIDAYDKW-----DAHG-----FNIKKGGA------------FRLNWSRPETYTDFIA 95

Query: 118 ---------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
                    +VI+ E      +      +   D    + +++  ++     G  H
Sbjct: 96  AGGPGGYAWNVIRSEADELLFKHAAECGVKTFD--ETKVASIEFSSPDLSSGGTH 148


>gi|225570258|ref|ZP_03779283.1| hypothetical protein CLOHYLEM_06354 [Clostridium hylemonae DSM
          15053]
 gi|225161053|gb|EEG73672.1| hypothetical protein CLOHYLEM_06354 [Clostridium hylemonae DSM
          15053]
          Length = 467

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
          +  ++D+IVIG G  G  AA  AAKLG  TA+I    +  T  +  C PA   +    L 
Sbjct: 1  MEHTFDLIVIGAGPGGYVAAVKAAKLGLKTAVIEAGRAGGTCLNRGCIPAKAMIHASSLY 60

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKK 87
          +E+ +        +D      ++L+ K+
Sbjct: 61 QEVMSGGRFGVSASDVTYDYKKILSYKE 88


>gi|83955827|ref|ZP_00964369.1| mercuric reductase [Sulfitobacter sp. NAS-14.1]
 gi|83839832|gb|EAP79009.1| mercuric reductase [Sulfitobacter sp. NAS-14.1]
          Length = 485

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 26/159 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLV 59
           SYD+IV+G G AG  A+  AA+ G   AL+ H T       +G +     I      H  
Sbjct: 22  SYDLIVVGAGSAGFSASITAAEAGKRVALVGHGTIGGTCVNVGCVPSKAMIRAADAVHSG 81

Query: 60  REIDALDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           R      G+       D + +        KG A          E+        + + ENL
Sbjct: 82  RSAARFPGISPCEHAVDWSAVV-------KGSADLVE------EMRHKKYIDLLPAYENL 128

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             I+   A        +   V     +I    +++ TG+
Sbjct: 129 TYIEEGPARL------VEGGVAVAERVISSPRILIATGS 161


>gi|67541811|ref|XP_664673.1| hypothetical protein AN7069.2 [Aspergillus nidulans FGSC A4]
 gi|40742008|gb|EAA61198.1| hypothetical protein AN7069.2 [Aspergillus nidulans FGSC A4]
          Length = 971

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 39/175 (22%)

Query: 1   MIN--RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M+N      V+V+GGG AG  AA+  A+ G    L+              ++    + H 
Sbjct: 1   MMNVPEKCKVLVVGGGPAGSYAASALAREGIDVVLLE--AEKFPRYHIGESMLPSMR-HF 57

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL- 117
           ++ IDA D       DA G      N+KKG A            +RL   R     + + 
Sbjct: 58  LKFIDAYDKW-----DAHG-----FNIKKGGA------------FRLNWSRPETYTDFIA 95

Query: 118 ---------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
                    +VI+ E      +      +   D    + +++  ++     G  H
Sbjct: 96  AGGPGGYAWNVIRSEADELLFKHAAECGVKTFD--ETKVASIEFSSPDLSSGGTH 148


>gi|319406313|emb|CBI79950.1| SdhA succinate dehydrogenase flavoprotein subunit [Bartonella sp.
          AR 15-3]
          Length = 614

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++  +DV+VIG G AG  A    A+ G  TA IT
Sbjct: 20 VDHKFDVVVIGAGGAGLRATLGMAEQGLRTACIT 53


>gi|317970560|ref|ZP_07971950.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CB0205]
          Length = 480

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G  TA+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLRTAIIE-SRDMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 66 LADAEHLKGFGIHAAPVRFE 85


>gi|70733025|ref|YP_262798.1| FMN oxidoreductase [Pseudomonas fluorescens Pf-5]
 gi|68347324|gb|AAY94930.1| probable FMN oxidoreductase PA5398 [Pseudomonas fluorescens Pf-5]
          Length = 686

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA VAA+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVAAERGHEVTLFE-KKEAIGGQITTASKAPQ 437


>gi|134292779|ref|YP_001116515.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
 gi|134135936|gb|ABO57050.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
          Length = 383

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV ++GGG  G  AA    + G   AL 
Sbjct: 7  YDVAIVGGGLVGASAALALTRRGLRVALF 35


>gi|282876738|ref|ZP_06285594.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis SK135]
 gi|281294389|gb|EFA86927.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis SK135]
 gi|329735812|gb|EGG72092.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU045]
          Length = 450

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 61  HSIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVTYIEGEARISKN 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 120 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 173

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 174 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 205


>gi|148554217|ref|YP_001261799.1| dihydrolipoamide dehydrogenase [Sphingomonas wittichii RW1]
 gi|148499407|gb|ABQ67661.1| dihydrolipoamide dehydrogenase [Sphingomonas wittichii RW1]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
          M +  +DVIVIG G  G  AA  AA+LG  TA +     T+G    ++ C P+   L   
Sbjct: 1  MSDYDFDVIVIGAGPGGYVAAIRAAQLGLRTACVE-SRETLGGTCLNVGCIPSKAMLHAS 59

Query: 57 HLVRE 61
           L  E
Sbjct: 60 ELYDE 64


>gi|171057081|ref|YP_001789430.1| monooxygenase FAD-binding [Leptothrix cholodnii SP-6]
 gi|170774526|gb|ACB32665.1| monooxygenase FAD-binding [Leptothrix cholodnii SP-6]
          Length = 425

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 30/168 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V+V+G G AG   A   A+ G    L+           C   +       L R      
Sbjct: 27  EVLVVGAGPAGSACATWLARAGVDVVLVDQH-DFPRDKVCGDGLIPDAHAALARLG---- 81

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV-- 124
                V DA   Q + +   +  A RG   Q D       + R IL    L V   +   
Sbjct: 82  -----VLDAVMAQAQPIGHVRCVAPRGG--QVDVAGRLAVLPRRILDH--LLVRHAQAGG 132

Query: 125 ---------AGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFL 158
                     G   +   +    ++         +R   VVL TG  +
Sbjct: 133 ARLHTPVKFEGLIEDGGRVRGARLRQAGADTIHELRAGWVVLATGAAM 180


>gi|57865799|ref|YP_189876.1| acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
           [Staphylococcus epidermidis RP62A]
 gi|57636457|gb|AAW53245.1| acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
           [Staphylococcus epidermidis RP62A]
 gi|329732762|gb|EGG69110.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU028]
          Length = 450

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 61  HSIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVTYIEGEARISKN 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 120 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 173

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 174 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 205


>gi|85716305|ref|ZP_01047278.1| hypothetical protein NB311A_18995 [Nitrobacter sp. Nb-311A]
 gi|85696821|gb|EAQ34706.1| hypothetical protein NB311A_18995 [Nitrobacter sp. Nb-311A]
          Length = 423

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI----------GSMSCNPAIGGLGKGHLV 59
           ++GGG AG     + A+ G    ++                  +M     +G +     V
Sbjct: 18  IVGGGPAGMMLGYLLARAGVDVVVLEKHRDFFRDFRGDTVHPSTMQVMDELGLIDDFLKV 77

Query: 60  --REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
              ++  LDG  G+       + R+ ++ +  A         +  +   ++ +     N 
Sbjct: 78  PHDKLQKLDGYFGK------TRLRIADISRTGAKYPFIAFMPQWDFLDFLREKGRRYPNF 131

Query: 118 DVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            ++ G E  G     +++  +   D S +      LT G   R  I  
Sbjct: 132 TLMMGTEATGLVRNGDMVIGVHATDGSGVFTIMADLTVGCDGRHSIIR 179


>gi|332975177|gb|EGK12077.1| dihydrolipoyl dehydrogenase [Kingella kingae ATCC 23330]
          Length = 476

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DV+VIG G  G  AA  AA+LG  TA I    + +G+    PA+GG 
Sbjct: 3  QFDVVVIGAGPGGYIAAIRAAQLGFKTACIDAGVNKVGNA---PALGGT 48


>gi|329769419|ref|ZP_08260832.1| thioredoxin-disulfide reductase [Gemella sanguinis M325]
 gi|328838989|gb|EGF88580.1| thioredoxin-disulfide reductase [Gemella sanguinis M325]
          Length = 314

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAI 50
          + R YDVI+IG G AG  AA  A++   +T ++           TH          +P  
Sbjct: 1  MTRDYDVIIIGSGPAGLSAALYASRAKLNTLVLEKSKNGGQAVITHLIENYPGAVEDPT- 59

Query: 51 GGLGKGHLVREIDALDGLMGR 71
          G      +V +  +    + +
Sbjct: 60 GPRVTARMVEQAKSFGAEIKQ 80


>gi|254775844|ref|ZP_05217360.1| putative oxidoreductase/HEAT repeat-containing protein
          [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 747

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 15 DVLVIGGGTAGTMAALSAAEHGAQVLLL 42


>gi|223937075|ref|ZP_03628983.1| glucose-methanol-choline oxidoreductase [bacterium Ellin514]
 gi|223894356|gb|EEF60809.1| glucose-methanol-choline oxidoreductase [bacterium Ellin514]
          Length = 655

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDVIV+G G  G  +A V AK G    ++
Sbjct: 10 HKEYDVIVVGSGAGGSMSAYVLAKAGVKVLML 41


>gi|126178337|ref|YP_001046302.1| geranylgeranyl reductase [Methanoculleus marisnigri JR1]
 gi|125861131|gb|ABN56320.1| geranylgeranyl reductase [Methanoculleus marisnigri JR1]
          Length = 403

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD +V+GGG AG  AA + A+ G S AL+  +T        N   GG      VR +D 
Sbjct: 6   EYDAVVVGGGPAGSTAACLLAEAGHSVALLERRT-----YPRNKVCGGCLSQKTVRFLDR 60

Query: 65  LDGL------MGRVADAAGIQFRVLNVKK--------GPAVRGPRTQADRELYRLAMQRE 110
           +  L         + D  G  + +    +         P     R + D  L ++A +  
Sbjct: 61  VFSLPVPALRQAGLLDFTGTGYALYIGSRRILTEDLDEPVYFTGRERYDAFLAKMAARAG 120

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                       E AG +  +  ++     D        ++   G   R
Sbjct: 121 AEVHTG-----AEAAGIDHARRTVT---TSDGDRYSARVIIGADGVHSR 161


>gi|2500115|sp|Q43154|GSHRP_SPIOL RecName: Full=Glutathione reductase, chloroplastic; Short=GR;
           Short=GRase; Flags: Precursor
 gi|529375|dbj|BAA07108.1| glutathione reductase precursor [Spinacia oleracea]
          Length = 489

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           N  +D+ VIG G  G  AA  +A LGA   +       I     +  IGG+G     +G 
Sbjct: 13  NYDFDLFVIGAGSGGVRAARFSANLGAKVGICELPFHPIS----SEVIGGVGGTCVIRGC 68

Query: 58  LVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + ++I        G + DA    + +         +  + + D  +    + + +LS   
Sbjct: 69  VPKKILVYGASFGGELEDAKNYGWELNEKIDFNWKKLLQKKTDEIIRLNNIYKRLLSNAG 128

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           + + +GE  G     N +  +   D +        +++ TG+
Sbjct: 129 VKLYEGE--GKIVGPNEVQ-VTQLDGTKLSYSAKHILIATGS 167


>gi|329768451|ref|ZP_08259942.1| thioredoxin-disulfide reductase [Gemella haemolysans M341]
 gi|328836784|gb|EGF86434.1| thioredoxin-disulfide reductase [Gemella haemolysans M341]
          Length = 314

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAI 50
          ++R YDVI+IG G AG  AA  A++   ST ++           TH          +P  
Sbjct: 1  MSRHYDVIIIGSGPAGLSAALYASRAKLSTLVLEKSKNGGQAAITHLIENYPGAVEDPT- 59

Query: 51 GGLGKGHLVREIDALDGLMGR 71
          G      +V +  +    + +
Sbjct: 60 GPRVTARMVEQAKSFGAEIKQ 80


>gi|253572200|ref|ZP_04849604.1| NAD-utilizing dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251838380|gb|EES66467.1| NAD-utilizing dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 550

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQISREHTINPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASAAILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E N I  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENNEIKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|184157699|ref|YP_001846038.1| putative oxidase [Acinetobacter baumannii ACICU]
 gi|332876384|ref|ZP_08444153.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6014059]
 gi|183209293|gb|ACC56691.1| conserved hypothetical protein-putative oxidase [Acinetobacter
          baumannii ACICU]
 gi|322508006|gb|ADX03460.1| Putative FAD dependent oxidoreductase [Acinetobacter baumannii
          1656-2]
 gi|323517594|gb|ADX91975.1| putative oxidase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735394|gb|EGJ66452.1| FAD dependent oxidoreductase TIGR03364 [Acinetobacter baumannii
          6014059]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|308811128|ref|XP_003082872.1| putative chloroplast lycopene beta cyclase precursor (ISS)
           [Ostreococcus tauri]
 gi|116054750|emb|CAL56827.1| putative chloroplast lycopene beta cyclase precursor (ISS)
           [Ostreococcus tauri]
          Length = 1352

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 14/171 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             +YD++++G G AG  AA  A+K G   AL+                     G    E 
Sbjct: 68  EEAYDLVIVGCGPAGLSAADEASKRGLRVALV----DPYPLAPWMNNY-----GVWCDEF 118

Query: 63  DALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
            AL      R            +  +G  +     Q DR +L +  + R +     ++  
Sbjct: 119 KALGFDDCYRAMWNKARVIIDDSDPEGKILDREYAQVDRKKLKQKLISRSVKQ--GVEFG 176

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              V   +      S++ + D   +    V+  TG   R ++   +   P 
Sbjct: 177 TAAVESCDHGHEHYSTVKLDDGRTVYAKMVLDATG-HSRKLVDFDREFTPG 226


>gi|10862871|emb|CAC13956.1| glutathione reductase [Mesembryanthemum crystallinum]
          Length = 461

 Score = 44.9 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           +  +D+ VIG G  G  AA  +AK GA   +       I     +  IGG+G     +G 
Sbjct: 13  HYDFDLFVIGAGSGGVRAARFSAKFGAKVGICELPFHPIS----SEVIGGVGGTCVIRGC 68

Query: 58  LVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + ++I        G + DA    + +         +  + + D  L    + + +LS   
Sbjct: 69  VPKKILVYGASFSGELQDARNYGWELNENIDFNWKKLLQKKTDEILRLNNIYKRLLSNAG 128

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           + + +GE  G     N +  +   D +        +++ TG+
Sbjct: 129 VKLYEGE--GKIVSPNEVQ-VTQLDGTKLSYSAKHILIATGS 167


>gi|297626283|ref|YP_003688046.1| dihydrolipoyl dehydrogenase (E3 component of alpha keto acid
          dehydrogenase complexes) (dihydrolipoamide
          dehydrogenase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296922048|emb|CBL56612.1| Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid
          dehydrogenase complexes) (Dihydrolipoamide
          dehydrogenase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 466

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          ++  YDV+V+G G  G  AA  AA+LG  TA+I  K        +G +     +      
Sbjct: 1  MSAHYDVVVLGAGPGGYVAAIRAAQLGLKTAIIEKKWWGGVCLNVGCIPTKALLRNAELA 60

Query: 57 HLV-REIDALD 66
          HLV +E D   
Sbjct: 61 HLVQKEADTFG 71


>gi|115384096|ref|XP_001208595.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196287|gb|EAU37987.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 601

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPAIGGLGKGHLVR 60
           R YDVI+IG G AG  AA    + G S  ++  +   +G     +  P  GG+       
Sbjct: 142 RKYDVIMIGAGLAGLTAAEAVVRSGHSCLVLEAR-DRVGGRTWSAKLPGGGGIVDLGAAW 200

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQREILSQENLDV 119
             D       ++A  +G +    N +    ++      DR  +    +  ++ +Q +L  
Sbjct: 201 INDTKQSRAYQLALRSGAELIEQNTEGNCLLQ--DANGDRITFPYGELPFDVETQTHLAE 258

Query: 120 IQGEVA 125
           I+  V 
Sbjct: 259 IRDMVE 264


>gi|147918901|ref|YP_687373.1| NADPH:thioredoxin reductase (TrxR) [uncultured methanogenic
          archaeon RC-I]
 gi|110622769|emb|CAJ38047.1| NADPH:thioredoxin reductase (TrxR) [uncultured methanogenic
          archaeon RC-I]
          Length = 310

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV VIG G AG  AA    +   ST L 
Sbjct: 4  MTDTIYDVAVIGAGPAGMTAALYCGRANMSTILF 37


>gi|330445223|ref|ZP_08308875.1| OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489414|dbj|GAA03372.1| OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 386

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKGHL 58
             YDVIV GGG  G   A   AKLG   A++        T +        AI       L
Sbjct: 2   EQYDVIVAGGGMVGAATALGLAKLGLEVAVLEGFAPQPYTDSQPMDLRVSAISPNSVALL 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL----Y-------RLAM 107
            R + A D +           F+ L   + P  R      D  L    Y       +LA+
Sbjct: 62  ER-LGAWDAVKQ----MRLCPFKRLETWESPECRTRFNADDMNLAQLGYIVENRVLQLAL 116

Query: 108 QREILSQENLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            ++  S +NL ++     V+  +TE   I  + ++D   ++C  +V   G 
Sbjct: 117 WQQFESADNLTLLCPAKMVSAMHTEGGYI--VELEDKQTLQCRLLVGADGA 165


>gi|322391019|ref|ZP_08064523.1| thioredoxin reductase [Streptococcus parasanguinis ATCC 903]
 gi|321142249|gb|EFX37723.1| thioredoxin reductase [Streptococcus parasanguinis ATCC 903]
          Length = 303

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 46/156 (29%), Gaps = 43/156 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D ++IG G AG  AA  AA+     ALI                          E    
Sbjct: 2   FDTVIIGAGPAGMTAALYAARSNLKVALI--------------------------ERGIP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   +D       + N      + GP            M   + +     +  G+V 
Sbjct: 36  GGQMNNTSD-------IENYPGYANISGPDLA-------EKMFEPLENLGVEHLF-GQVE 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                      IV  D       TVV+ TG+  R +
Sbjct: 81  RIEDHGAT-KKIVTDDG-EFEAKTVVIATGSNHRSL 114


>gi|254464914|ref|ZP_05078325.1| dihydrolipoyl dehydrogenase [Rhodobacterales bacterium Y4I]
 gi|206685822|gb|EDZ46304.1| dihydrolipoyl dehydrogenase [Rhodobacterales bacterium Y4I]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   HL+ 
Sbjct: 3  QYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHSTHLLH 61

Query: 61 EID---ALDGLMGRV 72
          E +   A  GL G+ 
Sbjct: 62 EAEHNFAHMGLKGKA 76


>gi|126435353|ref|YP_001071044.1| FAD dependent oxidoreductase [Mycobacterium sp. JLS]
 gi|126235153|gb|ABN98553.1| FAD dependent oxidoreductase [Mycobacterium sp. JLS]
          Length = 447

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-----------G 56
           VI++G G  G   A   A+ G   A+          +  +P    +G+            
Sbjct: 3   VIIVGAGPTGLFCAVALARRGHKVAV----------VDRDPGPPPVGRWRRRGVMQFDHA 52

Query: 57  HLVR--EIDALDGLMGRVADA---AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           H  R   +DAL   M  V DA   AG      +   G A+   R+  +R L+R+A     
Sbjct: 53  HTFRMPVVDALRAEMPDVVDALTVAGAGIATDSKGSGTALLCRRSTFERVLHRIAAL--- 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQD 141
             Q+ +    G V   +     ++ +V+ D
Sbjct: 110 --QDGITRHVGTVQRPHRVDGRVTGVVVGD 137


>gi|302632542|ref|NP_001181856.1| squalene monooxygenase [Gallus gallus]
          Length = 573

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 23/179 (12%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKT---STI-GSM---SCNPAIGG 52
           ++  YD  VIV+G G  G   AAV A+ G    +I         I G +       A+  
Sbjct: 117 LSPQYDPEVIVVGSGVLGSSLAAVLARDGRKVTVIERDLKEPDRIVGELLQPGGLNALKD 176

Query: 53  LGKGHLVREIDALDGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLA----M 107
           LG    V  IDA       + D  +  +  +      P     R  + R  +       +
Sbjct: 177 LGLEDTVEGIDAQTVNGYIIHDLESKSEVEIP----FPTSEDGRVVSGRSFHHGQFIMGL 232

Query: 108 QREILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
           +R  +++ N   I+G V     E + I  +        D   +     V+  G F +  
Sbjct: 233 RRAAMAEPNAKFIEGTVTQLLEEDDCIVGVQYKDKETGDTKELHAPLTVVADGLFSKFR 291


>gi|254786031|ref|YP_003073460.1| glutathione reductase [Teredinibacter turnerae T7901]
 gi|237686582|gb|ACR13846.1| glutathione-disulfide reductase [Teredinibacter turnerae T7901]
          Length = 461

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 25/157 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D+ VIG G  G  A+ +AA+LGA  A+           +C                  
Sbjct: 7   DFDLFVIGAGSGGVRASRIAAQLGAKVAVAE---DLYLGGTCVNV--------------- 48

Query: 65  LDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD--VIQ 121
             G + +     G  F+      +G        + D +  R    +EI     +   +++
Sbjct: 49  --GCVPKKLFVYGSHFKEDFEAARGFGWSYDNLEFDWQTLRDNKTQEIERLNGVYGRILE 106

Query: 122 GEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGT 156
           G        +  I+   +V  D        +++ TG+
Sbjct: 107 GSGVEIIRGRATIAGPNLVAVDGETYTAKNILVATGS 143


>gi|154495750|ref|ZP_02034446.1| hypothetical protein BACCAP_00029 [Bacteroides capillosus ATCC
           29799]
 gi|150274948|gb|EDN01996.1| hypothetical protein BACCAP_00029 [Bacteroides capillosus ATCC
           29799]
          Length = 606

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG  A+  AA++GA   ++       GS       GG   G       A  
Sbjct: 131 DVIVVGAGLAGMVASVRAAEVGAKVLVLEQNFRIGGSA---NTAGGSISGAGFEAQKAAG 187


>gi|154251909|ref|YP_001412733.1| dihydrolipoamide dehydrogenase [Parvibaculum lavamentivorans
          DS-1]
 gi|154155859|gb|ABS63076.1| dihydrolipoamide dehydrogenase [Parvibaculum lavamentivorans
          DS-1]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          +  S+D++VIG G  G E A  +A+LG S A++  K   +G    ++ C P+   L    
Sbjct: 1  MADSFDLVVIGAGPGGYECAIKSAQLGLSVAVVE-KRDRLGGTCLNVGCIPSKALLHASE 59

Query: 58 LVREIDA 64
          L  E  A
Sbjct: 60 LFHEASA 66


>gi|113953174|ref|YP_730490.1| geranylgeranyl reductase [Synechococcus sp. CC9311]
 gi|113880525|gb|ABI45483.1| geranylgeranyl reductase [Synechococcus sp. CC9311]
          Length = 462

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA V A+ G  T L   K     +  C    GG     +V E D  D 
Sbjct: 4   VAVVGGGPSGSCAAEVLARAGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPDS 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILS 113
               + D      ++++       ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNREVDIKLDPLGYDDNAYIGMCRREVFD 100


>gi|71909806|ref|YP_287393.1| monooxygenase, FAD-binding:FAD dependent oxidoreductase:tryptophan
           halogenase [Dechloromonas aromatica RCB]
 gi|71849427|gb|AAZ48923.1| Monooxygenase, FAD-binding:FAD dependent oxidoreductase:Tryptophan
           halogenase [Dechloromonas aromatica RCB]
          Length = 444

 Score = 44.9 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 22/165 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI--THKTS-TIGS--MSCN-PAIGGLGKGHLVR 60
           DV+VIGGG AG   A + A+ G    ++   H     IG   +  N P    +G   +  
Sbjct: 14  DVLVIGGGPAGSTVAPMLAEKGYKVVMLEKAHHPRFHIGESLLPANLPLFERMG---IAE 70

Query: 61  EIDALDGLM--GRVADAAGIQFRVLNVKKG------PAVRGPRTQADRELYRLAMQREIL 112
           E+ A+  L               V N  +        A +  R Q D  L R A ++ + 
Sbjct: 71  EVKAIGMLKPGAEFVSPHHDMSSVFNFAEAWDKSMPYAYQVKRDQFDTILIRNAEKKGVE 130

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTG 155
             E     + +   F  +       V  D   I      VV  +G
Sbjct: 131 VHEGC---KAKAVDFLPDNTAAIRAVSDDGREIEWQARFVVDASG 172


>gi|260555433|ref|ZP_05827654.1| monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii ATCC
          19606]
 gi|260411975|gb|EEX05272.1| monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii ATCC
          19606]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|121533284|ref|ZP_01665112.1| Succinate dehydrogenase [Thermosinus carboxydivorans Nor1]
 gi|121307843|gb|EAX48757.1| Succinate dehydrogenase [Thermosinus carboxydivorans Nor1]
          Length = 453

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 97/288 (33%), Gaps = 52/288 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKL-GASTALITHKTSTIGSMSC--------------NPA 49
            +DV+VIG G AG  AA  A++  G S AL+T    T  +  C              N +
Sbjct: 3   KFDVLVIGSGGAGMRAALEASRQGGVSVALMTKMFPTRSATGCAQGGINGALKNADPNDS 62

Query: 50  IGGLGKGHLVREIDALDGL------------MGRVADAAGIQF------RVLNVKKGPAV 91
           I        V+  D L                 R  D  G+ F      R+     G A 
Sbjct: 63  I-EKHFFDTVKGSDYLGDQDAIEFFTANAPDCIRELDYFGVPFSRDKEGRIAQRPFGGAS 121

Query: 92  RGPRTQADRELYRLAMQREILSQE---NLDVIQG-EVAGFNTEKNIISSIV---MQDNSM 144
             PRT    +   L +   +  Q    N+ V+Q   +     ++  +  +V   ++   +
Sbjct: 122 -SPRTCYSADKTGLVILHTLYEQCLKYNVKVLQEWYLLELVVDQGKLCGVVALELKTGRI 180

Query: 145 --IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF----DTGRLKT 198
             I    VV+ TG   R           +   G +   +   +    +F     TG   T
Sbjct: 181 VPIIAKAVVMATGGAGRMYWLRTTNPFASTGDGMAACLNAGIALKDPEFVQFHPTGLAGT 240

Query: 199 G----TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
           G      +R +G  +I +K E+             T  + ++ IE  I
Sbjct: 241 GILMSEASRGEGGYLINNKGERFMQRYAPEKMELATRDLVSQAIETEI 288


>gi|1619246|emb|CAA69872.1| succinate dehydrogenase subunit A [Paenibacillus macerans]
          Length = 581

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 121/420 (28%), Gaps = 98/420 (23%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGK 55
           M  +S  VIV+GGG AG  A   +A+ G    L +          C     N A+   G+
Sbjct: 1   MAKQS--VIVVGGGLAGLMATIKSAEAGVPVHLFSLVPVKRSHSVCAQGGINGAVNTKGE 58

Query: 56  GHLVRE---IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPA 90
           G    E        G           M   A       D  G+ F       L+ ++   
Sbjct: 59  GDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGG 118

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCS 148
            +  RT          +   +  Q    V + E AG  T  E     S+V+ D+ + R  
Sbjct: 119 TKHHRTAFAGATTGQQLLYALDEQ----VRRHEAAGLVTKYENWEFLSVVLDDDGVCR-- 172

Query: 149 TVVLTTGTFLRGVIHIGKLKIP-----AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
                T   LR +  +            G           NS +        +       
Sbjct: 173 ---GITAQNLRSMEIVTFASDAVILATGGPGIIFGKT--TNSVINTGTAASAVYQQGVHY 227

Query: 204 LDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIY 263
            +G+ I    T     D++L   S        R      T  + +    + E        
Sbjct: 228 ANGEFIQIHPTAI-PGDDKLRLMSESARGEGGRIW----TYKDGKPWYFLEEKY------ 276

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQF 322
                   P Y   +   I        H    +  G+N  ++VY + +S   P+E+  + 
Sbjct: 277 --------PAYGNLVPRDIAT--REIFHVCVDQKLGINGENMVYLD-LSHKDPKELDVKL 325

Query: 323 IRTIPGLEK---------------VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
              I   EK                     G      +++  ++        I GLF AG
Sbjct: 326 GGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGM----WVDYNQMT------NIPGLFAAG 375


>gi|295109815|emb|CBL23768.1| Thioredoxin reductase [Ruminococcus obeum A2-162]
          Length = 435

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++YD+++IGGG AG  AA  A K G  + LI  +   +G
Sbjct: 10 KNYDIVIIGGGPAGLSAAIAARKNGTESILILERDDKLG 48


>gi|241667890|ref|ZP_04755468.1| hypothetical protein FphipA2_03906 [Francisella philomiragia
          subsp. philomiragia ATCC 25015]
 gi|254876430|ref|ZP_05249140.1| conserved hypothetical protein [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254842451|gb|EET20865.1| conserved hypothetical protein [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 394

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M  ++YDVI+IG G AG   A  AAK      +          +     + G G+ +
Sbjct: 1  MSIKNYDVIIIGAGAAGLMCAIEAAKRARDVLV----LDHANKIGKKILMSGGGRCN 53


>gi|213422572|ref|ZP_03355637.1| hypothetical protein Salmonentericaenterica_34462 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 78

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG   A V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGAGVAGSVTALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|167627330|ref|YP_001677830.1| hypothetical protein Fphi_1105 [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|167597331|gb|ABZ87329.1| conserved hypothetical protein [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
          Length = 394

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M  ++YDVI+IG G AG   A  AAK      +          +     + G G+ +
Sbjct: 1  MSIKNYDVIIIGAGAAGLMCAIEAAKRARDVLV----LDHANKIGKKILMSGGGRCN 53


>gi|118469632|ref|YP_885073.1| FAD dependent oxidoreductase [Mycobacterium smegmatis str. MC2
          155]
 gi|118170919|gb|ABK71815.1| FAD dependent oxidoreductase [Mycobacterium smegmatis str. MC2
          155]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++ +YD +VIGGGH G  +AA  A+ GA T ++    S++G  +   A         V  
Sbjct: 1  MSNNYDALVIGGGHNGLVSAAYLARAGARTLVLE-SRSSLGGAATTEAPWDDAPHLRVTR 59

Query: 62 IDALDGLM 69
          +  +  LM
Sbjct: 60 LSYVMSLM 67


>gi|42523340|ref|NP_968720.1| hypothetical protein Bd1860 [Bdellovibrio bacteriovorus HD100]
 gi|39575546|emb|CAE79713.1| Uncharacterized FAD-dependent dehydrogenase [Bdellovibrio
           bacteriovorus HD100]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTS------------TIGSM-SCNPA-IGGLG 54
           +++G G AG  AA    + G    L    +               G +   N    G  G
Sbjct: 78  LIVGTGPAGLFAALRFVERGVPCVLFERGSDSGERIKGINQYWRYGKLDPRNNVCFGEGG 137

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV------RGPRTQADRELYRLAMQ 108
            G         DG +     +  I + +  + +  A         P   +DR    +   
Sbjct: 138 AGL------YSDGKLITRIKSPHIPYVMNRLVQFGAPEEIQWLSNPHVGSDRIRRVIPKL 191

Query: 109 REILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           RE L     ++    +V    TE   +  +  +  +  R   VV+ TG     +I+  +
Sbjct: 192 REFLRANGCEIHFNTQVTEVLTEGTQVVGVRTEHGTEFRSPHVVMATGHSAEDMINHLR 250


>gi|15237903|ref|NP_197804.1| SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/
           squalene monooxygenase [Arabidopsis thaliana]
 gi|6685407|sp|O65402|ERG12_ARATH RecName: Full=Squalene monooxygenase 1,2; AltName: Full=Squalene
           epoxidase 1,2; Short=SE 1,2
 gi|3123327|emb|CAA06769.1| squalene epoxidase homologue [Arabidopsis thaliana]
 gi|9757925|dbj|BAB08407.1| squalene monooxygenase 1,2 (squalene epoxidase 1,2) (se 1,2)
           [Arabidopsis thaliana]
 gi|332005882|gb|AED93265.1| Squalene monooxygenase 1,2 [Arabidopsis thaliana]
          Length = 517

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         +      P        +G     
Sbjct: 47  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCL 106

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N               R  +   ++R+  S  N
Sbjct: 107 EDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGR--FVQQLRRKAFSLSN 164

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK ++  +
Sbjct: 165 VRLEEGTVKSLLEEKGVVKGV 185


>gi|323493207|ref|ZP_08098337.1| oxidoreductase [Vibrio brasiliensis LMG 20546]
 gi|323312554|gb|EGA65688.1| oxidoreductase [Vibrio brasiliensis LMG 20546]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV++IG G AG   AA A K G  T ++ H
Sbjct: 1  MTEKFDVVIIGAGAAGLMCAAEAGKRGRKTLVLDH 35


>gi|320529208|ref|ZP_08030300.1| putative thioredoxin-disulfide reductase [Selenomonas artemidis
           F0399]
 gi|320138838|gb|EFW30728.1| putative thioredoxin-disulfide reductase [Selenomonas artemidis
           F0399]
          Length = 543

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 43/170 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YD +++GGG AG  AA   A+                               LV E
Sbjct: 1   MDKMYDAVIVGGGPAGLSAAIYLARAKCKV--------------------------LVVE 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +   G +   AD       V+N      + G    A  E        E LS        
Sbjct: 35  KEKTGGQITITAD-------VVNYPGLGKISGAELAAQMEQQARGFGAEFLS-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EV G   +++ +  +       +   +V+L TG   R V   G+ +   
Sbjct: 80  AEVIGLKLDQD-VKEVETTAG-TVEALSVILATGANPRKVGFAGEKQFQG 127


>gi|313896393|ref|ZP_07829946.1| putative thioredoxin-disulfide reductase [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975192|gb|EFR40654.1| putative thioredoxin-disulfide reductase [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 543

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 43/170 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ YD +++GGG AG  AA   A+                               LV E
Sbjct: 1   MDKMYDAVIVGGGPAGLSAAIYLARAKCKV--------------------------LVVE 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +   G +   AD       V+N      + G    A  E        E LS        
Sbjct: 35  KEKTGGQITITAD-------VVNYPGLGKISGAELAAQMEQQARGFGAEFLS-------- 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            EV G   +++ +  +       +   +V+L TG   R V   G+ +   
Sbjct: 80  AEVIGLKLDQD-VKEVETTAG-TVEALSVILATGANPRKVGFAGEKQFQG 127


>gi|298387983|ref|ZP_06997531.1| oxidoreductase, FAD-dependent [Bacteroides sp. 1_1_14]
 gi|298259249|gb|EFI02125.1| oxidoreductase, FAD-dependent [Bacteroides sp. 1_1_14]
          Length = 549

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNIDKILNVFCQHGASAAILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E N I  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENNEIKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|261250102|ref|ZP_05942679.1| NAD(FAD)-utilizing dehydrogenase [Vibrio orientalis CIP 102891]
 gi|260939606|gb|EEX95591.1| NAD(FAD)-utilizing dehydrogenase [Vibrio orientalis CIP 102891]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV++IG G AG   AA A K G  T ++ H
Sbjct: 1  MTEKFDVVIIGAGAAGLMCAAEAGKRGRKTLVLDH 35


>gi|261364256|ref|ZP_05977139.1| dihydrolipoyl dehydrogenase [Neisseria mucosa ATCC 25996]
 gi|288567498|gb|EFC89058.1| dihydrolipoyl dehydrogenase [Neisseria mucosa ATCC 25996]
          Length = 477

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G     PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGDA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V ++K   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGISVGDIKFDAAKMIARKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|169629330|ref|YP_001702979.1| putative oxidoreductase/HEAT repeat-containing protein
          [Mycobacterium abscessus ATCC 19977]
 gi|169241297|emb|CAM62325.1| Fumarate reductase/succinate dehydrogenase flavoprotein-like FrdA
          [Mycobacterium abscessus]
          Length = 902

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 15 DVLVIGGGTAGTMAALTAAENGAQVLLL 42


>gi|29347817|ref|NP_811320.1| NAD-utilizing dehydrogenase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339718|gb|AAO77514.1| NAD-utilizing dehydrogenase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 549

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPIIVERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNIDKILNVFCQHGASAAILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E N I  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENNEIKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|172058413|ref|YP_001814873.1| thioredoxin reductase [Exiguobacterium sibiricum 255-15]
 gi|171990934|gb|ACB61856.1| thioredoxin reductase [Exiguobacterium sibiricum 255-15]
          Length = 320

 Score = 44.9 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA  A++   ST +I
Sbjct: 6  QKIYDVIIIGAGPAGMTAALYASRANLSTLMI 37


>gi|297798894|ref|XP_002867331.1| hypothetical protein ARALYDRAFT_491679 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313167|gb|EFH43590.1| hypothetical protein ARALYDRAFT_491679 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 706

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPAIGGL 53
           + V+GGG +G  AA V A+ GA   LI                    I  M  N   G  
Sbjct: 226 IAVVGGGPSGLFAALVLAEFGADVTLIERGQAVEERGRDIGALVVRKILDMESNFCFGEG 285

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRG------PRTQADRELYRLA 106
           G G           L+ R+   +     VL    +  A         P    D+ +  L 
Sbjct: 286 GAGTWSD-----GKLVTRIGKNSATVLAVLKTLVRFGAPDNILVNGKPHLGTDKLVPLLR 340

Query: 107 MQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQD 141
             R  L    + +  G  V     E + +  + + D
Sbjct: 341 NFRHYLQSAGVTIKFGTRVDDLLVEDSRVVGVRVSD 376


>gi|145350106|ref|NP_194801.4| electron carrier/ oxidoreductase [Arabidopsis thaliana]
 gi|332660401|gb|AEE85801.1| FAD/NAD(P)-binding oxidoreductase-like protein [Arabidopsis
           thaliana]
          Length = 707

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPAIGGL 53
           + V+GGG +G  AA V A+ GA   LI                    I  M  N   G  
Sbjct: 227 IAVVGGGPSGLFAALVLAEFGADVTLIERGQAVEERGRDIGALVVRKILDMESNFCFGEG 286

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRG------PRTQADRELYRLA 106
           G G           L+ R+   +     VL    +  A         P    D+ +  L 
Sbjct: 287 GAGTWSD-----GKLVTRIGKNSATVLAVLKTLVRFGAPDNILVNGKPHLGTDKLVPLLR 341

Query: 107 MQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQD 141
             R  L    + +  G  V     E + +  + + D
Sbjct: 342 NFRHYLQSAGVTIKFGTRVDDLLVEDSRVVGVRVSD 377


>gi|114707562|ref|ZP_01440458.1| geranylgeranyl reductase [Fulvimarina pelagi HTCC2506]
 gi|114537121|gb|EAU40249.1| geranylgeranyl reductase [Fulvimarina pelagi HTCC2506]
          Length = 413

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +D +VIGGG AG  AA   A+ G STAL+
Sbjct: 21 KRFDAVVIGGGPAGSTAALRLAEAGYSTALV 51


>gi|110741867|dbj|BAE98875.1| hypothetical protein [Arabidopsis thaliana]
          Length = 714

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 27/156 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPAIGGL 53
           + V+GGG +G  AA V A+ GA   LI                    I  M  N   G  
Sbjct: 234 IAVVGGGPSGLFAALVLAEFGADVTLIERGQAVEERGRDIGALVVRKILDMESNFCFGEG 293

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRG------PRTQADRELYRLA 106
           G G           L+ R+   +     VL    +  A         P    D+ +  L 
Sbjct: 294 GAGTWSD-----GKLVTRIGKNSATVLAVLKTLVRFGAPDNILVNGKPHLGTDKLVPLLR 348

Query: 107 MQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQD 141
             R  L    + +  G  V     E + +  + + D
Sbjct: 349 NFRHYLQSAGVTIKFGTRVDDLLVEDSRVVGVRVSD 384


>gi|325689472|gb|EGD31477.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK115]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KYFDTIIIGGGPAGMMAAISSSFHGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFNNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E+L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 ESLEKKIAELGGTVITNTEIVSVKKTDELFTVRSSDQTWTCQKLIVTTG 163


>gi|269216967|ref|ZP_06160821.1| putative pyridine nucleotide-disulphide oxidoreductase [Slackia
           exigua ATCC 700122]
 gi|269129774|gb|EEZ60858.1| putative pyridine nucleotide-disulphide oxidoreductase [Slackia
           exigua ATCC 700122]
          Length = 738

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+VIGGG AG EAA +AA  G    L    
Sbjct: 481 VMVIGGGPAGMEAARIAAFRGHKVTLFEKN 510


>gi|126740256|ref|ZP_01755945.1| probable methylamine [Roseobacter sp. SK209-2-6]
 gi|126718711|gb|EBA15424.1| probable methylamine [Roseobacter sp. SK209-2-6]
          Length = 689

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 1   MINRSYD---VIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLG 54
           ++N+  D   ++V+G G AG EAA   ++ G   A+   KT     +      P +   G
Sbjct: 380 IMNKKGDSSNILVVGSGPAGLEAAWALSRRGYDVAIAEAKTEIGGRVTQERTLPGLSAWG 439

Query: 55  KGHLVRE 61
           +    RE
Sbjct: 440 RVVDYRE 446


>gi|170722121|ref|YP_001749809.1| monooxygenase FAD-binding [Pseudomonas putida W619]
 gi|169760124|gb|ACA73440.1| monooxygenase FAD-binding [Pseudomonas putida W619]
          Length = 430

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++V+G G AG   A    +LG    +++       ++         G    V E     G
Sbjct: 6   ILVLGAGPAGTATALGLRRLGYPVTVVS-DWRRFAAL--------EGVSQRVLEGLRNAG 56

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L G +A+AA    R +               DR+ +  A++R++  +  + VI+G +   
Sbjct: 57  LGGALAEAAMPATREVRWNGQHLQLNQEFLLDRQCFDRALRRDLE-RAGVTVIEGRIRD- 114

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                 +  + + D  +++   +V   G
Sbjct: 115 -VMHKGVHCVGLDDGQVLQAEFLVEARG 141


>gi|120554840|ref|YP_959191.1| soluble pyridine nucleotide transhydrogenase [Marinobacter
          aquaeolei VT8]
 gi|166223478|sp|A1U1Y5|STHA_MARAV RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|120324689|gb|ABM19004.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Marinobacter aquaeolei VT8]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    YDV+VIG G +G  AA  AAK     A+I  K +  G+ +    I      H V+
Sbjct: 1  MAEHHYDVVVIGAGPSGEGAAMNAAKHNRRVAIIEDKPTVGGNCTHWGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|312138143|ref|YP_004005479.1| 3-ketosteroid 1-dehydrogenase [Rhodococcus equi 103S]
 gi|311887482|emb|CBH46794.1| putative 3-ketosteroid 1-dehydrogenase [Rhodococcus equi 103S]
          Length = 570

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD++V+G G AG  AA  AA  G S  +I
Sbjct: 4  MSKQEYDIVVVGSGAAGMTAALTAAHKGLSVVVI 37


>gi|300783269|ref|YP_003763560.1| 3-ketosteroid-delta-1-dehydrogenase [Amycolatopsis mediterranei
          U32]
 gi|299792783|gb|ADJ43158.1| 3-ketosteroid-delta-1-dehydrogenase [Amycolatopsis mediterranei
          U32]
          Length = 574

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YDV+V+G G AG  AA  AAK G S  ++             P  GG  
Sbjct: 37 EYDVVVVGSGAAGMTAALTAAKRGLSVVVLE----------KAPTFGGSA 76


>gi|325674952|ref|ZP_08154639.1| 3-oxosteroid 1-dehydrogenase [Rhodococcus equi ATCC 33707]
 gi|325554538|gb|EGD24213.1| 3-oxosteroid 1-dehydrogenase [Rhodococcus equi ATCC 33707]
          Length = 570

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD++V+G G AG  AA  AA  G S  +I
Sbjct: 4  MSKQEYDIVVVGSGAAGMTAALTAAHKGLSVVVI 37


>gi|294012415|ref|YP_003545875.1| dihydrolipoamide dehydrogenase [Sphingobium japonicum UT26S]
 gi|292675745|dbj|BAI97263.1| dihydrolipoamide dehydrogenase [Sphingobium japonicum UT26S]
          Length = 466

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
          M +  YDV+VIG G  G  AA  AA+LG  TA       T+G    ++ C P+   L   
Sbjct: 1  MADFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAE-SRETLGGTCLNVGCIPSKALLHAS 59

Query: 57 HLVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
           L  E  A +G + ++          L+  +G
Sbjct: 60 ELYEE--AANGALAKLGVKIDKMSLDLDTMQG 89


>gi|240102414|ref|YP_002958723.1| Proline dehydrogenase, alpha subunit (pdha) [Thermococcus
           gammatolerans EJ3]
 gi|239909968|gb|ACS32859.1| Proline dehydrogenase, alpha subunit (pdha) [Thermococcus
           gammatolerans EJ3]
          Length = 481

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           D+IVIGGG AG  AA  A++ GA   LI    
Sbjct: 118 DIIVIGGGPAGLMAAIHASRAGAKVVLIDENP 149


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040519|gb|ACT57315.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
            +DVI+IG G AG  AA  AAK G  TAL++ 
Sbjct: 2  NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSP 34


>gi|46117558|ref|XP_384797.1| hypothetical protein FG04621.1 [Gibberella zeae PH-1]
          Length = 487

 Score = 44.9 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          I+ +YDVIVIG G AG  AA   A  G    +I  +   IG
Sbjct: 31 IDNTYDVIVIGAGFAGLVAARELAAKGLKVLIIEAR-DRIG 70


>gi|311897886|dbj|BAJ30294.1| putative geranylgeranyl reductase [Kitasatospora setae KM-6054]
          Length = 425

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   A+ G    L+  KT       C   +       LV ++    
Sbjct: 11  DVIVVGAGPAGASTAYWLAQAGLDVLLLE-KTEFPREKVCGDGLTPRAVKQLV-DMGIDV 68

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +           ++    ++   P   +   R   D  L R A +      EN
Sbjct: 69  SADGWLRNKGLRIIGGGVRLELDWPDLAAFPDYGLVRKRADFDELLARQAQKAGARLYEN 128

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDN-----SMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +V  G V         I+ +  +              VV   G   R  + +G  ++ +
Sbjct: 129 CNVS-GPVKD---RAGRITGVTAKLGPDKREVEFHAPLVVAADGNSTRLSLAMGLHRMES 184

Query: 172 GRMGDSPSNSLFN 184
             MG +      +
Sbjct: 185 RPMGVAYRTYFTS 197


>gi|291165989|gb|EFE28036.1| pyridine nucleotide-disulfide oxidoreductase [Filifactor alocis
           ATCC 35896]
          Length = 402

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D+ VIGGG AG  AA  A+K      L         S+     + G G+ ++   I   
Sbjct: 2   FDIAVIGGGSAGMMAAIHASKT-HKVIL----LEKNDSLGKKLLLTGGGRCNVTNSIPIE 56

Query: 66  DGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAMQRE 110
           + +      G+   +A  +F   ++ +    R    +          +D     L+  R+
Sbjct: 57  NFIQNIIGNGKFLYSAFSKFDNQDIIQFFQSRNTPLKEEDNGRMFPVSDSSKTILSTLRQ 116

Query: 111 ILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            L + N+ V     V  +N  ++ I S+V++DNS+++    +L TG
Sbjct: 117 ELQKNNVSVRYHARVTDWNVTEHHIESLVLEDNSIVQAKNYILATG 162


>gi|302521180|ref|ZP_07273522.1| electron transfer oxidoreductase [Streptomyces sp. SPB78]
 gi|318057867|ref|ZP_07976590.1| oxidoreductase [Streptomyces sp. SA3_actG]
 gi|318076977|ref|ZP_07984309.1| oxidoreductase [Streptomyces sp. SA3_actF]
 gi|333025134|ref|ZP_08453198.1| putative electron transfer oxidoreductase [Streptomyces sp. Tu6071]
 gi|302430075|gb|EFL01891.1| electron transfer oxidoreductase [Streptomyces sp. SPB78]
 gi|332744986|gb|EGJ75427.1| putative electron transfer oxidoreductase [Streptomyces sp. Tu6071]
          Length = 427

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 50/176 (28%), Gaps = 36/176 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   AK G    L+  KT+      C   +       L+       
Sbjct: 11  DVIVVGAGPAGSATAYHLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLI------- 62

Query: 67  GLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADREL------YRLAMQREILSQEN-- 116
             MG          R   L +  G    G R Q D         Y L  +R+   ++   
Sbjct: 63  -AMGIDISEEAGWLRNKGLRIIAG----GNRLQLDWPELASFPDYGLVRKRDDFDEQLAR 117

Query: 117 --------LDVIQGEVAGFNTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
                   L       A    E   I+ +  +              VV   G   R
Sbjct: 118 NAQKAGARLYERCNVGAPITDESGRITGVHAKLGEEKTPVTFHAPLVVAADGNSTR 173


>gi|257053260|ref|YP_003131093.1| thioredoxin reductase [Halorhabdus utahensis DSM 12940]
 gi|256692023|gb|ACV12360.1| thioredoxin reductase [Halorhabdus utahensis DSM 12940]
          Length = 311

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGG AGC A    A+ G  T +     S+I   +      G   G    +I+ 
Sbjct: 13  DHDVVVIGGGPAGCSAGIFTARYGLDTLVFDRGRSSIRRCAHLENYPGFPAGI---DIET 69

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT 96
              L+     AAG   R   V+   A+  P  
Sbjct: 70  YCELLHDHVRAAGCALREDLVESVEALETPVA 101


>gi|110668362|ref|YP_658173.1| thioredoxin reductase-like protein [Haloquadratum walsbyi DSM
          16790]
 gi|109626109|emb|CAJ52560.1| thioredoxin reductase homolog [Haloquadratum walsbyi DSM 16790]
          Length = 196

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLV 59
          +++  +DV+VIGGG AG +AA   AK G  T ++            NP +    K  +L+
Sbjct: 2  VLHHMHDVLVIGGGVAGLQAAVFTAKAGLETVVLD---------DGNPLVSNTDKIQNLL 52

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR 95
           E       + +      ++F   N++K    R  R
Sbjct: 53 TEERIAGDEIIKSGRERVMEFD-GNIEKATVTRLDR 87


>gi|154175213|ref|YP_001408042.1| radical SAM domain-containing protein [Campylobacter curvus
          525.92]
 gi|112802890|gb|EAU00234.1| radical SAM domain protein [Campylobacter curvus 525.92]
          Length = 511

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  YD++++G G AG  AA  A++ G    ++      +G    N  I G
Sbjct: 39 FDEEYDIVIVGTGFAGLSAALKASERGKKVLIV----EKMGRAGGNSVING 85


>gi|119718294|ref|YP_925259.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Nocardioides sp. JS614]
 gi|119538955|gb|ABL83572.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Nocardioides sp. JS614]
          Length = 484

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 81/288 (28%), Gaps = 55/288 (19%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE- 61
           + +YDV+V+G G AG   A  AA+ GA   L+   +   G++                E 
Sbjct: 4   DTTYDVVVVGAGTAGIPCAVHAAQGGARVLLVEKDSKIGGTLHVTGGHMAAAGTRRQAEH 63

Query: 62  ------------------IDALDGLMGRVADAAGIQFRVL-NVKKGPAVRGPRTQADREL 102
                               A D L+  VA+ A      L       A   PR     E 
Sbjct: 64  GIEDSPQAHLEDIRRISQGTARDDLIRIVAEHAADTVDWLAERGFAFAPETPRIVYGHEP 123

Query: 103 YRLA---------------MQREILSQE---NLDVIQGEVAGFNT--EKNIISSI-VMQD 141
           Y +A               ++ E+   +   +L V    V G     +   +  + V++ 
Sbjct: 124 YTVARTYYGKDEGLSILEVLRPELERTQESYDLTVWTDAVVGELRTGDDGGVIGVSVLRA 183

Query: 142 NSMIR--CSTVVLTTGTFLRG-----VIHIGKLKIPAGRMGDSPSNSL----FNSFMKFD 190
            S +      VVL TG +         +    L   A R        L            
Sbjct: 184 GSEVEVDADAVVLATGGYAADAELFEELEHAPLVSAAARTSTGDGLHLGLAAGARLQGAG 243

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
                       R +     W   ++Q       P     D+   R +
Sbjct: 244 THLPTFGGLPDPR-NPNRANWS--DRQRLTSERPPREIYVDRHGRRWV 288


>gi|322502940|emb|CBZ38024.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1147

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           VI++GGG AGC AA  AA  GA   L+             P +GG         I+A  
Sbjct: 390 VIIVGGGLAGCSAAIEAANCGAQVILLE----------KEPKLGGNS-AKATSGINAWG 437


>gi|293608480|ref|ZP_06690783.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829053|gb|EFF87415.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|254821790|ref|ZP_05226791.1| putative oxidoreductase/HEAT repeat-containing protein
          [Mycobacterium intracellulare ATCC 13950]
          Length = 766

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 16 DVLVIGGGTAGTMAALSAAENGAQVLLL 43


>gi|149198242|ref|ZP_01875288.1| hypothetical protein LNTAR_06869 [Lentisphaera araneosa HTCC2155]
 gi|149138538|gb|EDM26945.1| hypothetical protein LNTAR_06869 [Lentisphaera araneosa HTCC2155]
          Length = 622

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV+V+GGG AG  AA  A ++GA T L+   
Sbjct: 45 DVLVVGGGSAGHVAAIQAGRMGAKTVLLERN 75


>gi|146100731|ref|XP_001468931.1| NADH-dependent fumarate reductase [Leishmania infantum]
 gi|134073300|emb|CAM72026.1| putative NADH-dependent fumarate reductase [Leishmania infantum
           JPCM5]
          Length = 1147

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           VI++GGG AGC AA  AA  GA   L+             P +GG         I+A  
Sbjct: 390 VIIVGGGLAGCSAAIEAANCGAQVILLE----------KEPKLGGNS-AKATSGINAWG 437


>gi|219847026|ref|YP_002461459.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Chloroflexus aggregans DSM 9485]
 gi|219541285|gb|ACL23023.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Chloroflexus aggregans DSM 9485]
          Length = 412

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          YD IVIG G AG  AA   A+ G    ++ 
Sbjct: 2  YDTIVIGAGLAGMMAAIGRAERGERVLVLA 31


>gi|94495223|ref|ZP_01301804.1| beta-carotene ketolase [Sphingomonas sp. SKA58]
 gi|94425489|gb|EAT10509.1| beta-carotene ketolase [Sphingomonas sp. SKA58]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +    DV+VIG GH G  AA   AK G    ++  + + +G M+ +  +      HLV
Sbjct: 1  MTDQVDVVVIGAGHNGMAAAGYLAKAGKKVVVVE-RLAKVGGMTSSGYMIPEAPDHLV 57


>gi|72547417|ref|XP_843225.1| NADH-dependent fumarate reductase [Leishmania major strain
           Friedlin]
 gi|323363739|emb|CBZ12745.1| putative NADH-dependent fumarate reductase [Leishmania major strain
           Friedlin]
          Length = 1147

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           VI++GGG AGC AA  AA  GA   L+             P +GG         I+A  
Sbjct: 390 VIIVGGGLAGCSAAIEAANCGAQVILLE----------KEPKLGGNS-AKATSGINAWG 437


>gi|325264216|ref|ZP_08130948.1| FAD dependent oxidoreductase [Clostridium sp. D5]
 gi|324030700|gb|EGB91983.1| FAD dependent oxidoreductase [Clostridium sp. D5]
          Length = 452

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 31/211 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG   A  AA+ G    L+            N  +GG           A+ 
Sbjct: 20  DVVVIGGGPAGVATAETAARFGLRVLLVE----------KNGFLGGQ----------AVG 59

Query: 67  GLMGRVADAAGIQFRVLNVKKGPA----VRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           GL   +            VKKGP         R + + + Y    + ++     +D  + 
Sbjct: 60  GLSATICGLYLTNEDW-QVKKGPRQIVYGFAERFRCEMKKYGGLTEPQLYGNTYVDAHEP 118

Query: 123 EVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            +     E  +    + +  +++I  + +     T +             GR+       
Sbjct: 119 FIWKIVAENMLCAVGVKIMYHTVICDAVMENKKLTEV-----YVLTANGYGRICAKNYID 173

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
                +      G  + G    +   + I+ 
Sbjct: 174 ASGDAVLVAASGGMFRFGNDGIVQNPSFIFK 204


>gi|307293433|ref|ZP_07573279.1| dihydrolipoamide dehydrogenase [Sphingobium chlorophenolicum L-1]
 gi|306881499|gb|EFN12715.1| dihydrolipoamide dehydrogenase [Sphingobium chlorophenolicum L-1]
          Length = 466

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
          M +  YDV+VIG G  G  AA  AA+LG  TA       T+G    ++ C P+   L   
Sbjct: 1  MADFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAE-SRETLGGTCLNVGCIPSKALLHAS 59

Query: 57 HLVREIDALDGLMGRV 72
           L  E  A +G + ++
Sbjct: 60 ELYEE--AANGALAKL 73


>gi|223984006|ref|ZP_03634163.1| hypothetical protein HOLDEFILI_01453 [Holdemania filiformis DSM
          12042]
 gi|223963991|gb|EEF68346.1| hypothetical protein HOLDEFILI_01453 [Holdemania filiformis DSM
          12042]
          Length = 291

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          V+VIGGG AG EAA +AA  G    L        G++          KG 
Sbjct: 34 VMVIGGGPAGMEAARIAAARGHEVTLY----EKKGTLGGLLDFAHTVKGP 79


>gi|116754454|ref|YP_843572.1| thioredoxin-disulfide reductase [Methanosaeta thermophila PT]
 gi|116665905|gb|ABK14932.1| Thioredoxin-disulfide reductase [Methanosaeta thermophila PT]
          Length = 299

 Score = 44.9 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIV+G G AG  A    A+ G  T ++
Sbjct: 2  YDVIVVGAGPAGLTAGMYCARGGMKTLIL 30


>gi|330967937|gb|EGH68197.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. actinidiae str. M302091]
          Length = 464

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330878587|gb|EGH12736.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. morsprunorum str. M302280PT]
          Length = 464

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|328906606|gb|EGG26381.1| FAD dependent oxidoreductase [Propionibacterium sp. P08]
          Length = 458

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +DVI+IGGG AG  AA   ++ G    L                 GG+    +++EI
Sbjct: 33 DFDVIIIGGGVAGTVAAYQLSRAGHDVLL----IERGQEPGSKNLSGGVLYCRVLQEI 86


>gi|313836490|gb|EFS74204.1| FAD dependent oxidoreductase [Propionibacterium acnes HL037PA2]
 gi|314971064|gb|EFT15162.1| FAD dependent oxidoreductase [Propionibacterium acnes HL037PA3]
          Length = 457

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +DVI+IGGG AG  AA   ++ G    L                 GG+    +++EI
Sbjct: 32 DFDVIIIGGGVAGTVAAYQLSRAGHDVLL----IERGQEPGSKNLSGGVLYCRVLQEI 85


>gi|301381681|ref|ZP_07230099.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato Max13]
 gi|302058439|ref|ZP_07249980.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato K40]
 gi|302131156|ref|ZP_07257146.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato NCPPB 1108]
          Length = 464

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|298674747|ref|YP_003726497.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
 gi|298287735|gb|ADI73701.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
          Length = 396

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID- 63
            YDV+V+G G AG  A+  AA  GAS  LI    S    + C   +          E   
Sbjct: 2   KYDVVVVGAGPAGSIASRYAALNGASVLLIEEHQSIGSPVGCTGLLSTRAVSECDLEPSD 61

Query: 64  --ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
              L+ + G    +       ++  +  A    R   DR+L
Sbjct: 62  DFVLNNVKGAFIYSTDGIPLQIDGGQTKAYVVSRKTFDRKL 102


>gi|260553734|ref|ZP_05826005.1| monomeric sarcosine oxidase [Acinetobacter sp. RUH2624]
 gi|260405134|gb|EEW98633.1| monomeric sarcosine oxidase [Acinetobacter sp. RUH2624]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNHAQFDLIVVGAGILGLSAAIQAQEQGLKVCMFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|225388126|ref|ZP_03757850.1| hypothetical protein CLOSTASPAR_01861 [Clostridium asparagiforme
           DSM 15981]
 gi|225045787|gb|EEG56033.1| hypothetical protein CLOSTASPAR_01861 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
           + + YDV++IG G  G  AA  AA+ G    +I  K    T  +  C P    L   ++ 
Sbjct: 1   MAKHYDVVIIGAGPGGYTAAMKAAEFGLKAVVIEAKKFGGTCVNRGCIPTKALLHASNMF 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                    M +  D  G+    ++   G   +  +    R  YR  ++ +    + +DV
Sbjct: 61  H--------MMQNCDEFGVSTDFISFDFGKMQKYKKAAVKR--YRQGIEGQFEKLD-VDV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRC-STVVLTTGT 156
           + G           +   +            V++ TG 
Sbjct: 110 VYGTA--LLRRDKTVEVNLCGGGKEYFQGEAVIIATGA 145


>gi|213967353|ref|ZP_03395501.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato T1]
 gi|213927654|gb|EEB61201.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato T1]
          Length = 477

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 14 MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSVK 73

Query: 61 EI 62
          +I
Sbjct: 74 QI 75


>gi|218781577|ref|YP_002432895.1| monooxygenase FAD-binding [Desulfatibacillum alkenivorans AK-01]
 gi|218762961|gb|ACL05427.1| monooxygenase FAD-binding [Desulfatibacillum alkenivorans AK-01]
          Length = 398

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I +G G AG   A +AA+ G    +         ++  +P    L    ++ E+   
Sbjct: 3   YDFIFVGAGPAGLTGAILAARQGKRCLV----IEKKRALDLHPRGETLRHRPILDEVLGE 58

Query: 66  DGLMGRVADAAGIQ---FRVLNVKKGPA---VRGPRTQADRELYRLAMQREILSQENLDV 119
            G+M  +A A+      F  L  +  P    ++ P    +   +  A Q+++     LD+
Sbjct: 59  -GVMASLAIASTTIIEYFAPLPREVDPIVLDMKVPNLTFEWHEWMQAFQKQVQE---LDI 114

Query: 120 ---IQGEVAGFNTEKNIISSIV--MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
              +  EV     +   ++ +     D      S  V+        +I         G  
Sbjct: 115 DLKLGAEVIDITLDAGRVTGVKYLDADGKEAVASAEVIFASDGHGSLIGRKLGVDYTGIN 174

Query: 175 G 175
            
Sbjct: 175 Y 175


>gi|494878|pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
          From Azotobacter Vinelandii At 2.2 Angstroms
          Resolution. A Comparison With The Structure Of
          Glutathione Reductase
 gi|494879|pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
          From Azotobacter Vinelandii At 2.2 Angstroms
          Resolution. A Comparison With The Structure Of
          Glutathione Reductase
          Length = 476

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +DVIVIG G  G  AA  +A+LG  TALI
Sbjct: 1  SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALI 32


>gi|28869310|ref|NP_791929.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato str. DC3000]
 gi|38258471|sp|Q884I6|STHA_PSESM RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|28852551|gb|AAO55624.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tomato str. DC3000]
 gi|331019543|gb|EGH99599.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. lachrymans str. M302278PT]
          Length = 464

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|308272358|emb|CBX28964.1| hypothetical protein N47_B21100 [uncultured Desulfobacterium sp.]
          Length = 445

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIVIGGG AG  AA  AA+ GA T L       +       +I G G+ ++    D  D 
Sbjct: 20  VIVIGGGPAGLMAAGQAAEAGADTLL----LEKMKRTGLKLSITGKGRCNITNIADISDF 75

Query: 67  ----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQE 115
               G  G        +F   ++       G +   +R             + R +L Q 
Sbjct: 76  ISHFGKTGPFLRQTFARFFNTDLMTFFNELGLKLVTERGGRVFPASGKAPDVWRVLL-QW 134

Query: 116 N----LDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           N    + +     V         ++ +V Q    I C  V+L TG
Sbjct: 135 NKKSGVSINHSASVEKILIHNERVTGVVSQ-GREISCDAVILATG 178


>gi|119504915|ref|ZP_01626992.1| phytoene dehydrogenase [marine gamma proteobacterium HTCC2080]
 gi|119459201|gb|EAW40299.1| phytoene dehydrogenase [marine gamma proteobacterium HTCC2080]
          Length = 540

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 32/143 (22%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--------GK 55
           + YD I++G GH G  AAA  AK G    ++      IG  +    +             
Sbjct: 2   KQYDAIIVGAGHNGLTAAAYLAKAGLDVVVLEKN-DYIGGAAVTREMHEGWFYSSCSYVC 60

Query: 56  GHLVREI-----------------------DALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
             + + I                       D  D ++   AD       +       A  
Sbjct: 61  SMMRQSIHRDLDLTRHGLLLVPYLGTVNFSDRGDRVLIDYADEEAAYLELRRHSPHDADA 120

Query: 93  GPRTQADRELYRLAMQREILSQE 115
             R QAD   Y   +++ +L   
Sbjct: 121 MSRFQADLGRYAQLIRKTLLRTP 143


>gi|127511210|ref|YP_001092407.1| flavocytochrome c [Shewanella loihica PV-4]
 gi|126636505|gb|ABO22148.1| flavocytochrome c [Shewanella loihica PV-4]
          Length = 505

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 45/183 (24%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----------SMSCNP---- 48
           + S+DVI++G G AG  AA    + G  + L+  K   IG          ++  NP    
Sbjct: 38  DESHDVIIVGSGFAGLSAALNTKRQGIKSVLVLEKMQVIGGNSAINGGWLAIPKNPIQLA 97

Query: 49  -AIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV-----------KKGPAVRGP-- 94
             I       LV++       M        I  R L+            + G  ++    
Sbjct: 98  QGIEDDSPEELVKDQIISGRGMQNETALRQIANRALDAYELCIGTGVKFRDGFNIQVGGH 157

Query: 95  -RTQADR-----------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
            + +A R           +LY   ++  +  +     +Q  +  F  +   I  + ++ N
Sbjct: 158 NKARAIRTQHGSGGDITTKLYEAGVREGVEYR-----LQHYIEDFIMDGQEIVGVKVRKN 212

Query: 143 SMI 145
              
Sbjct: 213 YRF 215


>gi|325121784|gb|ADY81307.1| oxidoreductase [Acinetobacter calcoaceticus PHEA-2]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNNAQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|294631909|ref|ZP_06710469.1| FADH2 dependent halogenase [Streptomyces sp. e14]
 gi|292835242|gb|EFF93591.1| FADH2 dependent halogenase [Streptomyces sp. e14]
          Length = 451

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M    +D+ VIGGG AG  AA+  A+ G S  ++   T
Sbjct: 10 MSATDFDIAVIGGGPAGSTAASYLARAGLSVIVLESDT 47


>gi|239908959|ref|YP_002955701.1| geranylgeranyl reductase [Desulfovibrio magneticus RS-1]
 gi|239798826|dbj|BAH77815.1| geranylgeranyl reductase [Desulfovibrio magneticus RS-1]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 23/166 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  ++DV+++G G AG  AA V A  GAS  ++            +    GL     V  
Sbjct: 1   MTPTHDVVIVGAGPAGSTAAHVLASRGASVLVL-----DKAEFPRDKLCAGLLTWKAVDV 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR------TQADRELYRLAMQREILSQE 115
           ++ + G       A+G    V N    PA    R       Q +        +R +  + 
Sbjct: 56  LERVFGDAPEGLLASG----VFNAA--PAGYCIRFRDHIIAQGEMFYPFHLTKRRVFDKH 109

Query: 116 NLD--VIQGEVAGFNTEKNII----SSIVMQDNSMIRCSTVVLTTG 155
             D  V  G         + +     ++   D    R   V+   G
Sbjct: 110 LADRAVKAGADVRLGLAVSRVDPATGTVTTADGREFRGRYVLGCDG 155


>gi|126734821|ref|ZP_01750567.1| dihydrolipoamide dehydrogenase [Roseobacter sp. CCS2]
 gi|126715376|gb|EBA12241.1| dihydrolipoamide dehydrogenase [Roseobacter sp. CCS2]
          Length = 462

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G   A   A+LG   A +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIVIGAGPGGYVCAIRCAQLGMKVACVEGR-ETLGGTCLNVGCIPSKAMLHATHMLH 61

Query: 61 EID---ALDGLMGRV 72
          E +   A  GL G+ 
Sbjct: 62 EAEHNFATMGLKGKA 76


>gi|41407209|ref|NP_960045.1| putative oxidoreductase/HEAT repeat-containing protein
          [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395560|gb|AAS03428.1| FrdA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 906

 Score = 44.9 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 15 DVLVIGGGTAGTMAALSAAEHGAQVLLL 42


>gi|309380081|emb|CBX21492.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 477

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 58/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D       V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFTEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|171060517|ref|YP_001792866.1| FAD dependent oxidoreductase [Leptothrix cholodnii SP-6]
 gi|170777962|gb|ACB36101.1| FAD dependent oxidoreductase [Leptothrix cholodnii SP-6]
          Length = 565

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 21/171 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIG G  G  AA + A++G    ++      +         G   +G L  E +   G 
Sbjct: 113 LVIGFGPCGLFAALILAQMGLKPIVLE--RGKVVRERTKDTWGLWRQGVLTPESNVQFGE 170

Query: 69  MGRVADAAGIQFRVLN-----VKKGPAVRGPRTQADRELYR--------------LAMQR 109
            G    + G  +  ++      +K           D  LY                 M+ 
Sbjct: 171 GGAGTFSDGKLWSQISDPRHLTRKVLTEFVKAGAPDEILYVSKPHIGTFRLVSMIEKMRA 230

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           +I +       Q  V     E+  I  + +     +R   VVL  G   R 
Sbjct: 231 DIEALGGEIRFQQRVTDVLIEQGHIRGVTLASGEQLRADHVVLALGHSARD 281


>gi|163734174|ref|ZP_02141615.1| dihydrolipoamide dehydrogenase [Roseobacter litoralis Och 149]
 gi|161392710|gb|EDQ17038.1| dihydrolipoamide dehydrogenase [Roseobacter litoralis Och 149]
          Length = 462

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G   A   A+LG   A +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGSGPGGYVCAIRCAQLGLKVACVEGR-DTLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GLMG+
Sbjct: 62 EAEHNFAAMGLMGK 75


>gi|51244342|ref|YP_064226.1| opine oxidase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875379|emb|CAG35219.1| related to opine oxidase, subunit A [Desulfotalea psychrophila
          LSv54]
          Length = 476

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R YD IVIG G AG  A++  A++G     +
Sbjct: 1  MSRHYDTIVIGAGAAGLTASSTLAEMGLKVLTL 33


>gi|88809149|ref|ZP_01124658.1| dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7805]
 gi|88787091|gb|EAR18249.1| dihydrolipoamide dehydrogenase [Synechococcus sp. WH 7805]
          Length = 479

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G   A+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLKVAIIE-SRDMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 66 LADAEHLAGFGIHAAPVRFE 85


>gi|309804633|ref|ZP_07698698.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           09V1-c]
 gi|308166025|gb|EFO68243.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           09V1-c]
          Length = 518

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 56/207 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+  I  ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQ-IKKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGR 195
               R  +       +S ++      +
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQ 164


>gi|229491533|ref|ZP_04385354.1| monooxygenase, FAD-binding protein [Rhodococcus erythropolis SK121]
 gi|229321214|gb|EEN87014.1| monooxygenase, FAD-binding protein [Rhodococcus erythropolis SK121]
          Length = 426

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 16/195 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREI 62
             YDV+++G   AGC AA + A+ G   AL+  ++      + C   +   G   L R  
Sbjct: 7   EKYDVVIVGASIAGCAAAIMYAQQGLRIALLDARSDIRAHKVLCTHHLQPCGAPILQRLG 66

Query: 63  DALDGLMGRVAD-----AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QEN 116
                L   + +              +  +     G      R      + R++ +   N
Sbjct: 67  ATEKLLALGMVETVPTFWTPWGMITPDAAENSPPPGFNV---RRETLDPLLRQLANDYPN 123

Query: 117 LDVIQGE-VAGFNTEKNIISSIV-MQDNSMIR--CSTVVLTTG--TFLRGVIHIGKLKIP 170
           +D++ G  V+G  TE    + +   +  S         V   G  + +        +   
Sbjct: 124 VDLLLGHRVSGLLTENGTTAGVYGTEQGSAFTVGARLTVGADGKDSTVARSARCDSVTAS 183

Query: 171 AGRMGDSPSNSLFNS 185
            GR       S    
Sbjct: 184 NGRFSYFAQLSGLER 198


>gi|119718958|ref|YP_919453.1| glucose-inhibited division protein A [Thermofilum pendens Hrk 5]
 gi|119524078|gb|ABL77450.1| glucose-inhibited division protein A [Thermofilum pendens Hrk 5]
          Length = 340

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + YDV+++G G AG  AA  AA+   ST +++   
Sbjct: 7  KKYDVVIVGAGIAGLTAALYAARQKLSTLVVSADL 41


>gi|86609427|ref|YP_478189.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557969|gb|ABD02926.1| pyridine nucleotide-disulfide oxidoreductase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 532

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 59/228 (25%), Gaps = 32/228 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLGKGHLVRE 61
           V VIG G  GCE +   A+LG+   LI        K     +      +   G   L R 
Sbjct: 219 VAVIGAGPVGCELSQALARLGSEVTLIASRERILPKEDPEAAQVVQQQLTQDGIRILTR- 277

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                    R       Q   L   K  +  G     D+ +    +        N     
Sbjct: 278 --------VRATAVGQEQGAKLLSLKANSGAGTAAAGDQVIRAEEILVAAGRIPN----- 324

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTV-----VLTTGTFLRGVIHIGKLKIPAGRMGD 176
             V G   E   +          +          +   G  + G                
Sbjct: 325 --VEGLGLEAAGVQ--YTPQGIQVNAKLQTRNPRIYACGDVIGGPQFTHVAAYEG---AV 377

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
           +  N+LF    +  +        T   L    +   +  +Q+  + ++
Sbjct: 378 ALVNALFFPLSQARYRVIPWAIFTEPELARVGLTESEARQQYGKDVVV 425



 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYD++VIG G AG   A+ AA+L A   L+      +G       C P+   L   H V 
Sbjct: 45  SYDIVVIGAGAAGLVVASAAAQLKAKVLLVEGS-DRLGGDCLWYGCVPSKALLHVAHTVH 103

Query: 61  EID 63
            I 
Sbjct: 104 RIR 106


>gi|73993074|dbj|BAE43550.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIXN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   +   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLV---EYDXPYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|322495364|emb|CBZ30668.1| putative NADH-dependent fumarate reductase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1147

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           VI++GGG AGC AA  AA  GA   L+             P +GG         I+A  
Sbjct: 390 VIIVGGGLAGCSAAIEAANCGAHVILLE----------KEPKLGGNS-AKATSGINAWG 437


>gi|306835385|ref|ZP_07468406.1| alpha keto acid dehydrogenase complex [Corynebacterium accolens
          ATCC 49726]
 gi|304568751|gb|EFM44295.1| alpha keto acid dehydrogenase complex [Corynebacterium accolens
          ATCC 49726]
          Length = 475

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+N++  +++IGGG AG EAA   AK GA   +I
Sbjct: 1  MLNQTKRIVIIGGGPAGYEAALAGAKYGAEITII 34


>gi|225568703|ref|ZP_03777728.1| hypothetical protein CLOHYLEM_04782 [Clostridium hylemonae DSM
           15053]
 gi|225162202|gb|EEG74821.1| hypothetical protein CLOHYLEM_04782 [Clostridium hylemonae DSM
           15053]
          Length = 671

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           I++   V+V+G G AG EAA  AA+ G +  L+  K   IG +S
Sbjct: 385 ISKPCRVVVVGAGTAGLEAACTAAETGCTVTLLE-KQDHIGGLS 427


>gi|254422654|ref|ZP_05036372.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC
          7335]
 gi|196190143|gb|EDX85107.1| FAD dependent oxidoreductase, putative [Synechococcus sp. PCC
          7335]
          Length = 382

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D I++G G AG  AA   AK G S  L+
Sbjct: 2  FDCIIVGAGPAGSTAAYHLAKAGCSVLLL 30


>gi|254415364|ref|ZP_05029125.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177839|gb|EDX72842.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Microcoleus chthonoplastes PCC 7420]
          Length = 575

 Score = 44.9 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 43/198 (21%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGAS--TALIT----HKTSTIGSMSCNPAIGGLGKGH 57
           R +DVI++GGG AGC AA    +       AL+      ++ ++ +     A        
Sbjct: 2   REHDVIIVGGGLAGCRAALEIKRTDPKLNVALVAKTHPIRSHSVAAQGGMAATLKNVDAE 61

Query: 58  LVREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQADR 100
              E  A D + G   +AD   +                  VL   + P  R  +     
Sbjct: 62  DTWEAHAFDTVKGSDYLADQDAVEILTREAPDVVIDLEHLGVLF-SRLPDGRIAQRAFGG 120

Query: 101 ELYRLAMQ------REILSQ--ENL-----DVIQG-EVAGFNTEKNIISSIV-----MQD 141
             +R            IL +   NL      V +   V     E      +V        
Sbjct: 121 HSHRRTCYAADKTGHAILHELVSNLRKNDVTVYEEWYVMRLILEDGQAKGVVMFNLLTTH 180

Query: 142 NSMIRCSTVVLTTGTFLR 159
             ++R   V+  TG + R
Sbjct: 181 LQVVRAKAVMFATGGYGR 198


>gi|327490695|gb|EGF22476.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK1058]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KYFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDELFTIRSSDQTWTCQKLIVTTG 163


>gi|327459495|gb|EGF05841.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK1]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   KYFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDELFTIRSSDQTWTCQKLIVTTG 163


>gi|325686113|gb|EGD28164.1| hypothetical protein HMPREF5505_0149 [Lactobacillus delbrueckii
          subsp. lactis DSM 20072]
          Length = 181

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          ++D++V+G G +G  AA  A++ GA  AL+  K    G        G  G   +      
Sbjct: 2  NFDIVVVGAGASGISAALTASECGAKVALLE-KGDKFGGAG---MFGAQGLFAVESRAQK 57

Query: 65 LDGLMGRVADA 75
            G+   + DA
Sbjct: 58 EAGVKYSLKDA 68


>gi|260429690|ref|ZP_05783666.1| FAD-binding monooxygenase [Citreicella sp. SE45]
 gi|260419173|gb|EEX12427.1| FAD-binding monooxygenase [Citreicella sp. SE45]
          Length = 331

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 25/196 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             RSYD IV G   AGC AA + A+ G    +I      I        + G  +      
Sbjct: 3   YGRSYDAIVAGTRLAGCAAAMLLARQGLRVLVIEKTRHQIAPALPVGLLPGTVRFLRRWG 62

Query: 62  I-DALDGLMGRVADAAG-----IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           + +A+ G   +           +   +    +G A+  P  Q  +     A ++  ++  
Sbjct: 63  LFEAIQGAGTQAITRTTHVHGDLAIDMPLTGRGRAIYAPSRQLLKTFLVQAARQAGVAFS 122

Query: 116 NLDVIQ-------GEVAGFNT------EKNIISS-IVMQDNSMIRCSTVVLTT-----GT 156
               ++       G V+G         E ++ +  ++  D                  G 
Sbjct: 123 YETAVRGVLLDSCGAVSGLRVSRGDGPEDDVTAGLVITTDRQRPEAHRSADCLYQYVRGA 182

Query: 157 FLRGVIHIGKLKIPAG 172
             RG+       +  G
Sbjct: 183 STRGLRWHHGKGVWGG 198


>gi|163789809|ref|ZP_02184246.1| thioredoxin-disulfide reductase [Carnobacterium sp. AT7]
 gi|159875031|gb|EDP69098.1| thioredoxin-disulfide reductase [Carnobacterium sp. AT7]
          Length = 317

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--------HKTSTIGSMSCNPAIGGLG 54
           + YDV+VIG G AG  AA  A++   ST ++           T+ I +     +I G  
Sbjct: 5  EKIYDVVVIGSGPAGMTAALYASRSNLSTLMLERGVPGGQMINTAEIENYPGFNSILGPE 64

Query: 55 KGHLVREIDALDGLMGRVAD 74
              + E     G     AD
Sbjct: 65 LSDKMFEGSKQFGAEYAYAD 84


>gi|332157994|ref|YP_004423273.1| sarcosine oxidase, subunit alpha [Pyrococcus sp. NA2]
 gi|331033457|gb|AEC51269.1| sarcosine oxidase, subunit alpha [Pyrococcus sp. NA2]
          Length = 478

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 41/157 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGG AG  AA  A+  GA   L          +  NP +G    G LV++     
Sbjct: 118 DIIVIGGGPAGMMAAISASDTGAKVVL----------IDENPILG----GQLVKQTHKFF 163

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVA 125
           G                   +   +RG +           ++ EI  ++N+DV  Q    
Sbjct: 164 G----------------KRSQFAGIRGIKIA-------EILEEEIRKRDNIDVFLQTSAV 200

Query: 126 GF--NTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLR 159
           G   N  + ++  +  +          V++ TG   R
Sbjct: 201 GIFQNGNEKLVVGVRNERELIEFYGRAVIVATGAMER 237


>gi|326429823|gb|EGD75393.1| FAD dependent oxidoreductase [Salpingoeca sp. ATCC 50818]
          Length = 579

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++R+YD I++GGGH G  AAA  A+ G    ++      +G
Sbjct: 7  VSRAYDAIIVGGGHNGLVAAAYLARQGGKVLVLEKN-DQVG 46


>gi|323499690|ref|ZP_08104658.1| hypothetical protein VISI1226_18711 [Vibrio sinaloensis DSM
          21326]
 gi|323315291|gb|EGA68334.1| hypothetical protein VISI1226_18711 [Vibrio sinaloensis DSM
          21326]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV++IG G AG   AA A K G    L+ H
Sbjct: 1  MAEKFDVVIIGAGAAGLMCAAEAGKRGRKVLLLDH 35


>gi|291457952|ref|ZP_06597342.1| dihydrolipoyl dehydrogenase [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291419496|gb|EFE93215.1| dihydrolipoyl dehydrogenase [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 467

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
          +  ++D+I+IG G  G  AA  AA+LG  T ++    +  T  +  C P    L    L 
Sbjct: 1  MENNFDLIIIGAGPGGYVAAVKAAQLGMKTLVVEKDRAGGTCLNRGCIPTKAMLHASELF 60

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKK 87
          RE+ + +       +      R+L+ ++
Sbjct: 61 REMKSGEEFGIFAKELCFDYGRMLSYRQ 88


>gi|302527991|ref|ZP_07280333.1| chlorohydroquinone monooxygenase [Streptomyces sp. AA4]
 gi|302436886|gb|EFL08702.1| chlorohydroquinone monooxygenase [Streptomyces sp. AA4]
          Length = 576

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 22/155 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGKGHL 58
           M +   DV+V+G G AG  AA + A  G  T L+T      G  +  P   I       +
Sbjct: 1   MTSHDTDVLVVGSGPAGGSAALLLATYGVRTVLVT----KYGWTAHTPRAHITNQRTMEV 56

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGP------AVRGPRTQADRE--LYRLAMQRE 110
           +R++   D  + +      +   VL            A  G    ADR    Y  A    
Sbjct: 57  LRDLGIEDQALAQGTPPELMGDTVLCTSLAGEEIGRIASWGT---ADRSAAEYGSASPCH 113

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMI 145
           +     +D+ Q  +              ++ ++  
Sbjct: 114 L-----IDLPQTYLEPILVTNAAARGAKLRLDTEF 143


>gi|255323923|ref|ZP_05365049.1| flavoprotein disulfide reductase [Corynebacterium
          tuberculostearicum SK141]
 gi|255299103|gb|EET78394.1| flavoprotein disulfide reductase [Corynebacterium
          tuberculostearicum SK141]
          Length = 475

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+N++  +++IGGG AG EAA   AK GA   +I
Sbjct: 1  MLNQTKRIVIIGGGPAGYEAALAGAKYGAEITII 34


>gi|253582258|ref|ZP_04859481.1| thioredoxin reductase [Fusobacterium varium ATCC 27725]
 gi|251835797|gb|EES64335.1| thioredoxin reductase [Fusobacterium varium ATCC 27725]
          Length = 308

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLV 59
          M  + YDVI+IGGG AG  A     +    T +I  +   ++          G  +G   
Sbjct: 1  MNEKKYDVIIIGGGPAGLTAGIYIGRSKLKTLIIEKEGEGSLLMAHKIDNYPGFPEGLSG 60

Query: 60 REIDALDGLMGRVADAAGIQF 80
          +E+     LM + A+  G +F
Sbjct: 61 KELYI---LMKKQAEKFGAEF 78


>gi|254438911|ref|ZP_05052405.1| mercuric reductase [Octadecabacter antarcticus 307]
 gi|198254357|gb|EDY78671.1| mercuric reductase [Octadecabacter antarcticus 307]
          Length = 477

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLV 59
           ++D+ VIG G AG  AA  AA+ GA  ALI + T       +G +     I  +G  H  
Sbjct: 14  TFDLAVIGAGSAGFSAAITAAEDGARVALIGYGTIGGTCVNVGCVPSKVMIRAVGTLHSA 73

Query: 60  REIDALDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +     DG+    +V D   +            V   R   D +L        + + E +
Sbjct: 74  KGAARFDGVEATAQVTDWVAL------------VAQKRALVD-DLRAAKYVDVLPNYEGV 120

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             I+G+ +        +       +  IR   +++ TG+
Sbjct: 121 SYIEGQASFVKDGSLHVG------DRTIRAPKIIIATGS 153


>gi|332797827|ref|YP_004459327.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Acidianus hospitalis W1]
 gi|332695562|gb|AEE95029.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Acidianus hospitalis W1]
          Length = 566

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M   SYD IVIGGG AG  AA   A  G   A+I+
Sbjct: 1  MEKLSYDAIVIGGGLAGLMAAHEIAVSGYKVAVIS 35


>gi|314928945|gb|EFS92776.1| conserved domain protein [Propionibacterium acnes HL044PA1]
          Length = 115

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DVI+IGGG AG  AA   ++ G    LI
Sbjct: 32 DFDVIIIGGGVAGTVAAYQLSRAGHDVLLI 61


>gi|222478973|ref|YP_002565210.1| thioredoxin reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451875|gb|ACM56140.1| thioredoxin reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 323

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           Y+ +V+GGG AGC AA   A+ G   A+     S+I   + 
Sbjct: 15 DYEAVVVGGGPAGCSAAVFLAREGIDVAMFNRGRSSIARCAH 56


>gi|118462705|ref|YP_882579.1| oxidoreductase/HEAT repeat-containing protein [Mycobacterium
          avium 104]
 gi|118163992|gb|ABK64889.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 906

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 15 DVLVIGGGTAGTMAALSAAEHGAQVLLL 42


>gi|85704323|ref|ZP_01035426.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseovarius sp. 217]
 gi|85671643|gb|EAQ26501.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseovarius sp. 217]
          Length = 400

 Score = 44.9 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
           M    YD++V GGG AG  AAAV    G S   +            GS     A     +
Sbjct: 1   MAQADYDIVVSGGGVAGLTAAAVLGHAGFSVLCVDPAPPVTARDAEGSDLRTTAFLQPAQ 60

Query: 56  GHLVREID-------ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             L +          A D  + R+ DA G       V++  A           L    ++
Sbjct: 61  ALLDQAGLWARLAPFATDLQVMRIVDAGGEVAEPRVVREFNASDISERPFGWNLPNWLLR 120

Query: 109 RE----ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE    + S  ++    G        +   + + + D + +RC  V+   G
Sbjct: 121 REMVAHLESLPSVTFRPGTGTTTLFTREAEARVGLTDGARVRCRLVIAADG 171


>gi|312874327|ref|ZP_07734358.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2052A-d]
 gi|311090093|gb|EFQ48506.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2052A-d]
          Length = 308

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+  I  ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQ-IKKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|297584514|ref|YP_003700294.1| amine oxidase [Bacillus selenitireducens MLS10]
 gi|297142971|gb|ADH99728.1| amine oxidase [Bacillus selenitireducens MLS10]
          Length = 438

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV++IGGG AG  AAA  A  G   A++
Sbjct: 1  MRTSHYDVVIIGGGLAGLSAAARLAFNGKKVAVV 34


>gi|317053177|ref|YP_004119531.1| BFD domain protein (2Fe-2S)-binding domain protein [Pantoea sp.
          At-9b]
 gi|316953504|gb|ADU72975.1| BFD domain protein (2Fe-2S)-binding domain protein [Pantoea sp.
          At-9b]
          Length = 471

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
            YD+IV+G G AG  AA +A+  G   AL     +  G +   P
Sbjct: 2  NHYDLIVLGAGPAGISAALLASAKGLRVALFDENAAAGGQVYRAP 46


>gi|114778025|ref|ZP_01452925.1| Phytoene dehydrogenase and related protein [Mariprofundus
          ferrooxydans PV-1]
 gi|114551631|gb|EAU54184.1| Phytoene dehydrogenase and related protein [Mariprofundus
          ferrooxydans PV-1]
          Length = 517

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
             +DVIVIG G  G   A   +++G    L+  
Sbjct: 7  TNEFDVIVIGSGMGGMTTATALSRMGHKVLLLEQ 40


>gi|114770365|ref|ZP_01447903.1| hypothetical protein OM2255_12030 [alpha proteobacterium
          HTCC2255]
 gi|114549202|gb|EAU52085.1| hypothetical protein OM2255_12030 [alpha proteobacterium
          HTCC2255]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          R +DV +IG G AG   A  A + G +  L+        S      I G GK +
Sbjct: 2  RKFDVTIIGAGAAGMMCAIQAGRRGRTVLLV----DHAASAGDKIRISGGGKCN 51


>gi|3378540|emb|CAA06780.1| succinate dehydrogenase, subunit A [Acidianus ambivalens]
          Length = 566

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M   SYD IVIGGG AG  AA   A  G   A+I+
Sbjct: 1  MEKLSYDAIVIGGGLAGLMAAHEIAVSGYKVAVIS 35


>gi|11498837|ref|NP_070066.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
 gi|2649346|gb|AAB90008.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
          Length = 769

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           V VIGGG AG EAA   A  G    LI    +  G M+    +
Sbjct: 143 VAVIGGGVAGIEAALTLADSGIKVYLIEKNPTIGGHMATLNEV 185


>gi|120554083|ref|YP_958434.1| dihydrolipoamide dehydrogenase [Marinobacter aquaeolei VT8]
 gi|120323932|gb|ABM18247.1| dihydrolipoamide dehydrogenase [Marinobacter aquaeolei VT8]
          Length = 480

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIVIG G  G  AA  AA+LG  TA +
Sbjct: 1  MSDKFDVIVIGAGPGGYVAAIKAAQLGLKTACV 33


>gi|297538484|ref|YP_003674253.1| NADH:flavin oxidoreductase/NADH oxidase [Methylotenera sp. 301]
 gi|297257831|gb|ADI29676.1| NADH:flavin oxidoreductase/NADH oxidase [Methylotenera sp. 301]
          Length = 687

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           VIV+G G AG EAA V+A+ G    L    
Sbjct: 392 VIVVGAGPAGLEAARVSAERGHEVILFERN 421


>gi|227502797|ref|ZP_03932846.1| possible dihydrolipoyl dehydrogenase [Corynebacterium accolens
          ATCC 49725]
 gi|227076527|gb|EEI14490.1| possible dihydrolipoyl dehydrogenase [Corynebacterium accolens
          ATCC 49725]
          Length = 475

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+N++  +++IGGG AG EAA   AK GA   +I
Sbjct: 1  MLNQTKRIVIIGGGPAGYEAALAGAKYGAEITII 34


>gi|220908427|ref|YP_002483738.1| geranylgeranyl reductase [Cyanothece sp. PCC 7425]
 gi|219865038|gb|ACL45377.1| geranylgeranyl reductase [Cyanothece sp. PCC 7425]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 15/159 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTI-GSMSCNPAIGGLGKGHLVR 60
            YD+I++GGG AG   A  A + G  T L+         I G     P I  L +  L  
Sbjct: 4   EYDLIIVGGGPAGTTLALFAHRAGLKTLLLDKARFPRDKICGDAIILPGIKILEELELTA 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            +         V      +   L       +   R   D  L+  A +  + + E     
Sbjct: 64  ALH-QGPHSYSVNFHCFTESEHLQAPGSHCLMVKRLYFDHVLFTAA-KAVVDTCEG---- 117

Query: 121 QGEVAGFNTEKNIISSIVMQDNS----MIRCSTVVLTTG 155
             EV     ++  +  +  +  +          VV   G
Sbjct: 118 -AEVEQLLQQEGQVYGVRGRLQNQEEFEFTAKVVVGADG 155


>gi|326387122|ref|ZP_08208732.1| soluble pyridine nucleotide transhydrogenase [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208303|gb|EGD59110.1| soluble pyridine nucleotide transhydrogenase [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD++VIG G AG  AA  AAKLG    +I
Sbjct: 2  EKYDLVVIGSGPAGRRAAVQAAKLGKRVLVI 32


>gi|319935830|ref|ZP_08010258.1| thioredoxin reductase [Coprobacillus sp. 29_1]
 gi|319809185|gb|EFW05640.1| thioredoxin reductase [Coprobacillus sp. 29_1]
          Length = 552

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          ++N+ YD I++GGG AG  +A   A+   S  +I      IG      +      G L  
Sbjct: 19 LMNQVYDAIIVGGGPAGLSSAIYLARAKYSVLVIEQ--EKIGGQITITSEVVNYPGVLEA 76

Query: 61 EIDALDGLMGRVADAAGIQFRV 82
             +L   M + A   G +F++
Sbjct: 77 SGSSLTETMRKQAQKFGAEFKI 98


>gi|305679856|ref|ZP_07402666.1| dihydrolipoyl dehydrogenase [Corynebacterium matruchotii ATCC
           14266]
 gi|305660476|gb|EFM49973.1| dihydrolipoyl dehydrogenase [Corynebacterium matruchotii ATCC
           14266]
          Length = 479

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +   +DV+V+G G  G  AA  AA+LG   A++  +        +G +     +      
Sbjct: 9   VTEHFDVVVLGAGPGGYVAAIRAAQLGKKVAVVEKQYWGGVCLNVGCIPSKALLKNAEVA 68

Query: 57  HLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           H+        G+ G  + D      R   V +G           R ++ L  + +I    
Sbjct: 69  HIFNHEAKTFGISGNASFDFGAAHQRSRKVSEG---------IVRGVHYLMKKNKITEIN 119

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKI 169
            L V +        E      I+  DN +I   +VV +  G  + G I   + +I
Sbjct: 120 GLGVFKDAKTIEVREGKDTGKIITFDNCIIATGSVVRSLPGVTIGGNIVSFEEQI 174


>gi|225174812|ref|ZP_03728809.1| HI0933 family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169452|gb|EEG78249.1| HI0933 family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 416

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 152/438 (34%), Gaps = 75/438 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M      V+V+GGG AG  AA  AA  GAS  L+      +G      AI G G+G++  
Sbjct: 1   MGESQLKVLVVGGGPAGMMAAGQAAAAGASVTLLERN-DRLG---KKLAITGKGRGNVTN 56

Query: 61  EIDALDGLM---GRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELY-----------R 104
           + D  + +    G      G  +R  N  V++  A  G  T  +R               
Sbjct: 57  DADVEEIIAQFPGNGTFLYGPIYRFTNDDVRRFFAELGVPTVVERGGRVFPKSQKASDLV 116

Query: 105 LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLR 159
            AM+R ++    + V +GE V   +     +  +   +   I    V+L TG        
Sbjct: 117 QAMERFLVKT-GVRVQKGERVTRLSVAGGSVVGVKCGE-KEITADAVILATGGASYPATG 174

Query: 160 GVIHIGKLKIPAGRMGDSPSNSL--FNSFMKFDFDT-GRLKTGTPARLDGKTIIWDKTEK 216
                 +L   AG     P  +L       K+  +  G       AR+          E 
Sbjct: 175 STGDGYRLAEKAGHAVVKPRPALVPLEVAEKWVPELTGLALKNVSARV--------LVEG 226

Query: 217 QFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276
           + A E      F    ++   I   +T +   T  +              I         
Sbjct: 227 RLAAEEFGEMLFTHYGVSGPII---LTLSREATGAL-----NRGKKTQIQINLKPALTPQ 278

Query: 277 SIEDKIVRFGERNGHQIFLE------PEGLNTDVVYPNGISTALPEE-----IQHQFIRT 325
            ++ ++VR  ++   + F        P+ L   VV  +GIS  +P        + +   T
Sbjct: 279 QLDARLVRDFDKYSRKQFKNSLDDLLPQKLIEPVVRLSGISGDVPVNQITKQQRIKLAET 338

Query: 326 IPGLE-KVNIIRP-------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE- 376
           +  L   V  +RP          +    I+P     T+E+K +  L+ AG++    G   
Sbjct: 339 LTALTLNVTAMRPLREAIVTAGGVNVKEIDP----ATMESKLVKNLYFAGELIDVDGNTG 394

Query: 377 -----EAAAQGLVAGINS 389
                 A + G VAGI++
Sbjct: 395 GYNLQAAFSTGFVAGISA 412


>gi|198276687|ref|ZP_03209218.1| hypothetical protein BACPLE_02883 [Bacteroides plebeius DSM 17135]
 gi|198270212|gb|EDY94482.1| hypothetical protein BACPLE_02883 [Bacteroides plebeius DSM 17135]
          Length = 582

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                          N + G  
Sbjct: 119 VIVVGAGPGGLFAALKLIELGLRPIVVERGKNVRERKEDLARISREHKVDAESNYSFGEG 178

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A     + A   +    + R I 
Sbjct: 179 GAG------AYSDGKLYTRSKKRGSVEKILNVFCQHGASPTILSDAHPHIGTDKLPRVIE 232

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E   +  I            V+L TG   R V 
Sbjct: 233 NMRNTILACGGEVHFQTRMESILIEGQKVKGIETNTGKTFLGP-VILATGHSARDVY 288


>gi|153954314|ref|YP_001395079.1| enoate reductase [Clostridium kluyveri DSM 555]
 gi|219854913|ref|YP_002472035.1| hypothetical protein CKR_1570 [Clostridium kluyveri NBRC 12016]
 gi|146347195|gb|EDK33731.1| Predicted enoate reductase [Clostridium kluyveri DSM 555]
 gi|219568637|dbj|BAH06621.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 674

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +++VIG G AGCE A  AA+ G    +   K  TIG
Sbjct: 382 NILVIGAGPAGCELAIRAAERGHKVTVWEMK-DTIG 416


>gi|116753983|ref|YP_843101.1| geranylgeranyl reductase [Methanosaeta thermophila PT]
 gi|116665434|gb|ABK14461.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase [Methanosaeta
          thermophila PT]
          Length = 381

 Score = 44.9 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +IV+G G AG  AA  AA+LGA   L+  +      + C
Sbjct: 3  IIVVGAGPAGSTAAETAARLGADVILVERRMEIGSPVQC 41


>gi|291394264|ref|XP_002713493.1| PREDICTED: C18orf34 protein-like [Oryctolagus cuniculus]
          Length = 807

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 19/170 (11%)

Query: 412 IDDLTSKGVLEPYRMFTSRAEY-RISLRPDNADN-------RLTPIGMKLGCIGERRQKR 463
           I+D+ SK      +  TS  E+ R S R D  D        +  P   +     E RQ+ 
Sbjct: 44  IEDVESKIQKHLKQFETSFEEWSRTSSRKDMKDWTVAIPEEKFKPEEKRDEKCPELRQEM 103

Query: 464 FAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICP 523
                +  + +RSL        + L    I  K+ G    A+      +  +    ++  
Sbjct: 104 ETLLSEAIHLIRSLESDRAEAEEALKHQRIRRKKVGLKIDAWSIWKLQELPL----AVQK 159

Query: 524 DARKFSSLVIE---RLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDY 570
           +   +   +IE    L+ +   A Y  +Q I+ ++        I  D DY
Sbjct: 160 EHEAYVKDIIELQWHLEDKIREAQYIEKQKIKLEKA----NAKIKMDVDY 205


>gi|311739936|ref|ZP_07713770.1| alpha keto acid dehydrogenase complex [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311305009|gb|EFQ81078.1| alpha keto acid dehydrogenase complex [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 475

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+N++  +++IGGG AG EAA   AK GA   +I
Sbjct: 1  MLNQTKRIVIIGGGPAGYEAALAGAKYGAEITII 34


>gi|163738919|ref|ZP_02146332.1| Dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis BS107]
 gi|161387724|gb|EDQ12080.1| dihydrolipoyl dehydrogenase 2 [Phaeobacter gallaeciensis BS107]
          Length = 465

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   HL+ 
Sbjct: 3  SYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHSTHLLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAHMGLKGK 75


>gi|163741834|ref|ZP_02149224.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Phaeobacter gallaeciensis 2.10]
 gi|161385007|gb|EDQ09386.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Phaeobacter gallaeciensis 2.10]
          Length = 465

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   HL+ 
Sbjct: 3  SYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHSTHLLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAHMGLKGK 75


>gi|254829416|ref|ZP_05234103.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N3-165]
 gi|258601830|gb|EEW15155.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N3-165]
          Length = 664

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+VIGGG AG EAA  AA++G +T LI
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLI 412


>gi|50294536|ref|XP_449679.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528993|emb|CAG62655.1| unnamed protein product [Candida glabrata]
          Length = 581

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          ++R+YDV+V+G G AG +AA+V  + G  + L+      IG   C 
Sbjct: 1  MDRTYDVVVVGAGIAGLKAASVLTQSG-KSCLVIESRDRIGGRLCT 45


>gi|330467797|ref|YP_004405540.1| soluble pyridine nucleotide transhydrogenase [Verrucosispora
          maris AB-18-032]
 gi|328810768|gb|AEB44940.1| soluble pyridine nucleotide transhydrogenase [Verrucosispora
          maris AB-18-032]
          Length = 467

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV+V+G G +G +AA  AAKLG    L+  +   IG +  N    G      +RE   
Sbjct: 3  DYDVLVLGSGPSGQKAAIAAAKLGRRVGLVE-RRDMIGGVCINT---GTVPSKTLREAVL 58

Query: 65 L-DGLMGRVADAAGIQFRV 82
             GL  R  D  G  +RV
Sbjct: 59 YLTGLSQR--DLYGSSYRV 75


>gi|268324388|emb|CBH37976.1| conserved hypothetical protein, geranylgeranyl reductase family
           [uncultured archaeon]
          Length = 385

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREI 62
           + YDVIVIG G +G  A+   A  G +T L+      +  +  C  A+      HL   I
Sbjct: 2   QQYDVIVIGAGPSGAIASKTCAGKGLNTLLLE--KEGMPRLKLCGGAVSISALSHLDFGI 59

Query: 63  DALDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           +    L+ R    A + F+     +  K   A+   R + D  L   A+   +   E   
Sbjct: 60  EK--DLIERECYGARVHFKNHQIEVRRKSRLAILVSRDKFDAYLVSKAVDAGVALHE--- 114

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               +      E+  I  +V  +        V+   G
Sbjct: 115 --AEKATSIKPEQPRI--VVETNKEKYNTKVVIGADG 147


>gi|260888716|ref|ZP_05899979.1| putative alkyl hydroperoxide reductase F subunit [Selenomonas
          sputigena ATCC 35185]
 gi|330839882|ref|YP_004414462.1| alkyl hydroperoxide reductase F subunit [Selenomonas sputigena
          ATCC 35185]
 gi|260861585|gb|EEX76085.1| putative alkyl hydroperoxide reductase F subunit [Selenomonas
          sputigena ATCC 35185]
 gi|329747646|gb|AEC01003.1| alkyl hydroperoxide reductase F subunit [Selenomonas sputigena
          ATCC 35185]
          Length = 554

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  YD +VIGGG AG  AA   A+      ++
Sbjct: 6  NELYDAVVIGGGPAGLTAALYLARACCRVLVV 37


>gi|254824237|ref|ZP_05229238.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-194]
 gi|293593470|gb|EFG01231.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-194]
          Length = 664

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+VIGGG AG EAA  AA++G +T LI
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLI 412


>gi|254797024|ref|YP_003081861.1| dihydrolipoyl dehydrogenase [Neorickettsia risticii str.
          Illinois]
 gi|254590269|gb|ACT69631.1| dihydrolipoyl dehydrogenase [Neorickettsia risticii str.
          Illinois]
          Length = 461

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPA 49
          M  + +DV+VIGGG AG   +  AA+LG   A +  +TS  G+     C P+
Sbjct: 1  MSEKEFDVVVIGGGPAGYVCSIKAAQLGMRVACVEKRTSLGGTCLNEGCIPS 52


>gi|253564577|ref|ZP_04842034.1| dihydrolipoamide dehydrogenase [Bacteroides sp. 3_2_5]
 gi|251948353|gb|EES88635.1| dihydrolipoamide dehydrogenase [Bacteroides sp. 3_2_5]
 gi|301161102|emb|CBW20639.1| putative dihydrolipoamide dehydrogenase [Bacteroides fragilis 638R]
          Length = 447

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGG AG  AA  A K G S  L                 G +    L+     
Sbjct: 2   KYQVIIIGGGPAGYTAAEAAGKAGLSVLLF----EKQNLGGVCLNEGCIPTKTLLYSAKT 57

Query: 65  LDGLMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            DG       A+     V  V    P +   +++  R+L  L ++ ++ S  N+ +I GE
Sbjct: 58  YDG----AKHASKYAVTVPEVSFDLPKIIARKSKVVRKL-VLGVKSKLTSN-NVTIISGE 111

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                 +  +             C  ++L TG+
Sbjct: 112 AT-ILDKNTVRCGEET-----YECDNLILCTGS 138


>gi|255280932|ref|ZP_05345487.1| pyridine nucleotide-disulphide oxidoreductase [Bryantella
           formatexigens DSM 14469]
 gi|255268380|gb|EET61585.1| pyridine nucleotide-disulphide oxidoreductase [Bryantella
           formatexigens DSM 14469]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 75/481 (15%), Positives = 143/481 (29%), Gaps = 67/481 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR---EIDA 64
           +IVIG G +G  AA  AA+ GAS  +       +        I G G+ +L     EI  
Sbjct: 4   IIVIGAGASGMLAAITAARQGASVTI----LEGMEKPGKKLLITGSGRCNLTNLRQEITC 59

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ---REILSQENLDVIQ 121
             G           Q  V +        G      R+ Y   +      +L    L++ +
Sbjct: 60  YRGADSAFISGILRQLPVKDTLAFFRELGL-LTVSRDGYVYPVTGQASSVLEVLLLEIRR 118

Query: 122 --------GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                    +V     E  ++  +            V+L  G+                +
Sbjct: 119 LGIKLKCTEKVTAIRREDKLL--VKTA-GWTYEADAVILAAGSKAAPATGSDGSGYSLAK 175

Query: 174 MGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI---IWDKTEKQFADERLIPFSFMT 230
                  +   + +        +K  +  R+          +  E Q+ D  +   S + 
Sbjct: 176 SCGHSLVTPREALVPLAIRESWVKKLSGLRMQASVTLEGHTETGELQWTDTGI---SGIV 232

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
               +R   C + +   +    +   +      SG+      +   ++ D   R  E   
Sbjct: 233 VFQLSRYAVCALAKQQEKQISGVPVQLDLLPSVSGEALLSHLQQLQALRDG--RSAESLL 290

Query: 291 HQIFLEPEGLNTDVVYPNGISTA-----LPEEIQHQFIRTIPGL----------EKVNII 335
             +  +       ++   GIS +     L      + ++ +  L          E+  + 
Sbjct: 291 AGVLAKK--AAGPLLQAAGISPSEKAERLDGGALQRLVKVMKQLTLTVSGCRSFEQAQVC 348

Query: 336 RPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINS 389
           + G  + +  ++ +    TLE+KK+ GL++ G++    G         A A G  AG  +
Sbjct: 349 QGG--VRHTEVDAQ----TLESKKMPGLYITGELLDVDGICGGYNLQWAWASGFAAGRAA 402

Query: 390 ARKSNKLDCICFSRTDSYIGVMIDD-----LTSKGVLEPYRMFTSRAEYRISLRPDNADN 444
             +            +        D        K    P R    +   R     DNA  
Sbjct: 403 GSQEKMAATKAAGSQEKMAAAKATDRPEREQCCKAADHPERERCCKMADRP---ADNASE 459

Query: 445 R 445
           R
Sbjct: 460 R 460


>gi|217965422|ref|YP_002351100.1| NADH oxidase [Listeria monocytogenes HCC23]
 gi|217334692|gb|ACK40486.1| NADH oxidase [Listeria monocytogenes HCC23]
 gi|307570022|emb|CAR83201.1| NADH:flavin oxidoreductase [Listeria monocytogenes L99]
          Length = 664

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+VIGGG AG EAA  AA++G +T LI
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLI 412


>gi|157148045|ref|YP_001455364.1| hypothetical protein CKO_03852 [Citrobacter koseri ATCC BAA-895]
 gi|157085250|gb|ABV14928.1| hypothetical protein CKO_03852 [Citrobacter koseri ATCC BAA-895]
          Length = 472

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 29/168 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---------MSCNPAIGG 52
           +   +DV V+GGG  G  AA  AA+ G +   I    + +G          + C P+   
Sbjct: 1   MKTLFDVAVMGGGPGGYVAALRAAQRGLTVVCIDDGVNALGEPSPGGTCLNVGCIPSKSL 60

Query: 53  LGKGHLVREIDALDGLMG-RVADAAGIQFRVLNVKKGPA---VRGPRTQADRELYRLAMQ 108
           L    L  +I    G+ G +VAD +     ++  K        +G R   D+        
Sbjct: 61  LQSSELFVQIQHEAGIHGVKVADVSFDAAAMIQRKDAIVRRLTQGIRLLFDKNK------ 114

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             ++    L  +QG+              +  +   I    VV+ TG+
Sbjct: 115 --VMHVSGLATLQGQQDD--------CWQLTVNEQTISAKNVVIATGS 152


>gi|15835495|ref|NP_297254.1| succinate dehydrogenase flavoprotein subunit [Chlamydia muridarum
          Nigg]
 gi|7190909|gb|AAF39677.1| succinate dehydrogenase, flavoprotein subunit [Chlamydia
          muridarum Nigg]
          Length = 625

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N+   VI+IGGG AG  AA   A  G    L +          C    G     +L  E
Sbjct: 1  MNKPCRVIIIGGGLAGLSAAMQLADRGMLVELFSLTKVKRSHSVCAQG-GINAALNLKDE 59

Query: 62 ID 63
           D
Sbjct: 60 ND 61


>gi|76802915|ref|YP_331010.1| electron-transferring-flavoprotein dehydrogenase 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76558780|emb|CAI50373.1| predicted electron-transferring-flavoprotein dehydrogenase 2
           [Natronomonas pharaonis DSM 2160]
          Length = 457

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 26/173 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-GSMSCNPAIGGLGKGHLV 59
           M   SYD++V+GGG AGC AAA AA+ G    L+  K+    G ++C  AI G      V
Sbjct: 1   MPPESYDIVVVGGGTAGCFAAATAAQNGLDVVLLERKSEEEGGHIACGDAIKGTSTFPDV 60

Query: 60  --REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP-----RTQADRELYRLAMQRE-- 110
             RE    +          GI        KG  +            DR+ Y   +  E  
Sbjct: 61  IDREYLREESFTNE-----GITLARFENPKGENLDIGFRGNNGAIVDRKRYGEVLLEEAD 115

Query: 111 ---ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTF 157
                   N  V+Q        E  ++  +    N          V+   G  
Sbjct: 116 RVGAELHYN-TVVQ----DVIQENGVVRGVQAMRNGDALEYEADVVIDAAGAL 163


>gi|46906735|ref|YP_013124.1| NADH:flavin oxidoreductase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093114|ref|ZP_00230890.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 4b H7858]
 gi|226223115|ref|YP_002757222.1| NADH:flavin oxidoreductase [Listeria monocytogenes Clip81459]
 gi|254853858|ref|ZP_05243206.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL R2-503]
 gi|254933244|ref|ZP_05266603.1| NADH:flavin oxidoreductase [Listeria monocytogenes HPB2262]
 gi|254992916|ref|ZP_05275106.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J2-064]
 gi|255522130|ref|ZP_05389367.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL J1-175]
 gi|300765140|ref|ZP_07075126.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N1-017]
 gi|46880000|gb|AAT03301.1| NADH:flavin oxidoreductase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018487|gb|EAL09244.1| NADH:flavin oxidoreductase [Listeria monocytogenes str. 4b H7858]
 gi|225875577|emb|CAS04280.1| Putative NADH:flavin oxidoreductase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607243|gb|EEW19851.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL R2-503]
 gi|293584804|gb|EFF96836.1| NADH:flavin oxidoreductase [Listeria monocytogenes HPB2262]
 gi|300514111|gb|EFK41172.1| NADH:flavin oxidoreductase [Listeria monocytogenes FSL N1-017]
 gi|328467559|gb|EGF38621.1| NADH:flavin oxidoreductase [Listeria monocytogenes 1816]
 gi|332310912|gb|EGJ24007.1| NADH oxidase [Listeria monocytogenes str. Scott A]
          Length = 664

 Score = 44.6 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+VIGGG AG EAA  AA++G +T LI
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCNTTLI 412


>gi|312889982|ref|ZP_07749526.1| glucose-inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
 gi|311297514|gb|EFQ74639.1| glucose-inhibited division protein A [Mucilaginibacter paludis DSM
           18603]
          Length = 622

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 22/173 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGG +G  AA  A+++G  T L+  +T  +G M     +   G   +  + +   
Sbjct: 30  DVLIIGGGASGTTAAIQASRMGVKTLLVE-ETEWLGGM-----LTSAGVSAIDGDNNLPS 83

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ----ENLDVIQG 122
           GL           +       G A           L+  ++  +IL Q     NL +   
Sbjct: 84  GLWAEFRQKLRDYY-------GGAAAVETGWVSNTLFEPSVGNKILKQLAVNNNLTIWYK 136

Query: 123 EV---AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            V            ++       S+I    ++  T   L  V+    +K   G
Sbjct: 137 TVWQSVKKIDGGWQVAVKKAGKTSLINARLLIDATE--LGDVMAAAGVKYDVG 187


>gi|300783978|ref|YP_003764269.1| oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299793492|gb|ADJ43867.1| oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 512

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           SYDV+++GGGH G  AAA  A+ G S  ++  +  T G+ 
Sbjct: 2  NSYDVVIVGGGHNGLVAAAYLARAGRSVLVLERREETGGAA 42


>gi|294678302|ref|YP_003578917.1| FAD dependent oxidoreductase [Rhodobacter capsulatus SB 1003]
 gi|294477122|gb|ADE86510.1| FAD dependent oxidoreductase [Rhodobacter capsulatus SB 1003]
          Length = 435

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+GGG+ G  AA   A+ G    ++    +  G+   N    G G+   V  ++ L 
Sbjct: 38  DVCVVGGGYTGLSAALHLARAGRKVVVLEAHRAGFGASGRNGGQIGSGQRLDVGTLEKLV 97

Query: 67  G-----LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
           G      +  +A+ A      L  + G   R       R+   +A  +E
Sbjct: 98  GRERTRRLWDMAEEAKALTYALADQAGVPTRRGVAHLGRKRAEVAWLQE 146


>gi|294012048|ref|YP_003545508.1| dihydrolipoamide dehydrogenase [Sphingobium japonicum UT26S]
 gi|292675378|dbj|BAI96896.1| dihydrolipoamide dehydrogenase [Sphingobium japonicum UT26S]
          Length = 467

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           ++  +YDVIV+G G  G  AA  AA+LG  TA++      +G +     C P    L   
Sbjct: 2   IMAENYDVIVLGSGPGGYVAAIRAAQLGLKTAIVE--RENLGGICLNWGCIPTKALLRSA 59

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   +             +     V+   +G A      Q ++ +  L  + +I     
Sbjct: 60  EIYHYMQHAGDYGLAATQISADIAAVVKRSRGVAK-----QLNQGVTHLMKKNKIAVH-- 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGTFLRGV 161
                    G    K  +S  V +D     +    +++ TG   R +
Sbjct: 113 ------MGEGKLVAKGRLS--VTKDGKTDELTAKNIIIATGARARDL 151


>gi|163758434|ref|ZP_02165522.1| N-methylproline demethylase, putative [Hoeflea phototrophica
           DFL-43]
 gi|162284723|gb|EDQ35006.1| N-methylproline demethylase, putative [Hoeflea phototrophica
           DFL-43]
          Length = 682

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
            +S  V+++G G AG EAA VAA+ G    +   +    G + 
Sbjct: 385 EKSRRVVIVGAGPAGLEAARVAAERGHRVTVFEAQPDAGGQIR 427


>gi|332283684|ref|YP_004415595.1| dihydrolipoamide dehydrogenase [Pusillimonas sp. T7-7]
 gi|330427637|gb|AEC18971.1| dihydrolipoamide dehydrogenase [Pusillimonas sp. T7-7]
          Length = 475

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + + +DV+VIG G  G  AA  AA+LG S A          +    PA GG 
Sbjct: 1  MAKQFDVVVIGAGPGGYIAAIRAAQLGKSVAC----IDAWSTADGKPAPGGT 48


>gi|254459231|ref|ZP_05072653.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
 gi|207084124|gb|EDZ61414.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Campylobacterales bacterium GD 1]
          Length = 412

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 130/420 (30%), Gaps = 91/420 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++++YD+IV+G G AG  AA  AA+ G    L       +  ++      G G+ +L   
Sbjct: 1   MSKNYDLIVVGAGAAGMIAAIRAARNGKKVLL----LEKLSQIAAKLRATGGGRCNLTNT 56

Query: 62  IDALDGLMGRVADAAGIQ---------------------------FRVLNVKKGPAVRGP 94
           +   + +     D   +Q                           FRV       A    
Sbjct: 57  LSNEEFMAKFGRDGRFMQDALNRFNHKNLIEFFKEIGVETHAPDGFRVFPTSHSSATIIS 116

Query: 95  RTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT 154
             Q   +  +      + SQ+        V    +E N +S +          S V++ T
Sbjct: 117 ALQ---DEMQRVKIDVLCSQK--------VEKLLSEDNRVSGVQTST-DTFFSSNVIIAT 164

Query: 155 GTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
           G     V+                ++ L +   +       LKT      + +     K 
Sbjct: 165 GGLGYPVLGAEGDGYSL-------AHELGHKTTELHPAMMPLKTKEEWVGNCRADTIAKA 217

Query: 215 EKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           E +   ++        D I  +                  E     + Y           
Sbjct: 218 ELRVDIKKHKKLKASGDLIFTKS-----GIRGPVVLDFAREITPLISKYGEVPILVNLTK 272

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQF-----------I 323
             + E++I +  +     +   P+    ++V     ST LPE +  +            +
Sbjct: 273 GMN-EEQITKHLKDE---VLKNPDATMKELV-----STLLPEALSLELCKLTLPDPDAKL 323

Query: 324 RTIPGLEKVNIIRP---------GY------AIEYDYINPKELFP-TLETKKISGLFLAG 367
           ++IPGL +  +I           G+       I    I  KE+ P T+++K I GL+  G
Sbjct: 324 KSIPGLSRAKLINYLAWTPLTVTGHDGFKMAMITRGGIVLKEIDPKTMQSKIIDGLYFCG 383


>gi|18152905|gb|AAF98391.2| invasion protein IbeA [Escherichia coli]
          Length = 456

 Score = 44.6 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAIGGLGK 55
           +V+V+GGG +G  AA  AA+ GA+T LI           T    +I        +     
Sbjct: 18  EVLVVGGGPSGIAAAMSAAREGAATMLIERFGCFGGMMTTAGVESIAWWRHENTVES--- 74

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           G L REI+     MG  +       + +N ++       +  AD  L +  ++R +    
Sbjct: 75  GGLAREIEETAKSMGASSPEPQSNSQAINEERF------KLVADAMLEQAGVRRVLHIT- 127

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGT 156
                         + N +  ++ +       I  + ++  TG 
Sbjct: 128 --------AVDVIKQGNNLLGVITESKSGRQAILANVIIDCTGD 163


>gi|331699313|ref|YP_004335552.1| geranylgeranyl reductase [Pseudonocardia dioxanivorans CB1190]
 gi|326954002|gb|AEA27699.1| geranylgeranyl reductase [Pseudonocardia dioxanivorans CB1190]
          Length = 441

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIV+G G AG  AA   A+ G    L+
Sbjct: 21 DVIVVGAGPAGSTAATHLARAGLDVLLL 48


>gi|306820772|ref|ZP_07454397.1| thioredoxin-disulfide reductase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551162|gb|EFM39128.1| thioredoxin-disulfide reductase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 543

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 53/169 (31%), Gaps = 43/169 (25%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD+IVIG G AG  AA   A+    T ++               IGG     +  E+
Sbjct: 4   NNLYDLIVIGAGPAGLTAAIYMARARYKTLVLE-----------KADIGGQI--TITSEV 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
               G+          Q          A +     A                   ++   
Sbjct: 51  VNYPGIHRTDGKELTSQM---------AEQAKAFGA-------------------EIKSD 82

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           EV     E + I  +V ++N      TV++ TG   R +   G+ K   
Sbjct: 83  EVVELILEGD-IKKVVTKNN-TYEALTVIVATGANPRQLGFEGEAKYKG 129


>gi|296278614|gb|ADH04271.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278616|gb|ADH04272.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278618|gb|ADH04273.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278620|gb|ADH04274.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278622|gb|ADH04275.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278624|gb|ADH04276.1| lycopene beta-cyclase [Capsicum annuum]
 gi|296278626|gb|ADH04277.1| lycopene beta-cyclase [Capsicum annuum]
          Length = 498

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 19/191 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E +A+D
Sbjct: 83  DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWP---------NNYGVWVDEFEAMD 133

Query: 67  GL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            L       +    +   N  K       R    ++L    MQ+ IL+   +   Q +V 
Sbjct: 134 LLDCLDATWSGATVYIDDNTTKDLNRPYGRV-NRKQLKSKMMQKCILN--GVKFHQAKVI 190

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++  S ++  D   I+ + V+  TG F R ++   K   P           L   
Sbjct: 191 KVIHEESK-SMLICNDGITIQATVVLDATG-FSRSLVQYDK---PYNPGYQVAYGILAEV 245

Query: 186 FMKFDFDTGRL 196
             +  FD  ++
Sbjct: 246 -EEHPFDVNKM 255


>gi|254699749|ref|ZP_05161577.1| hypothetical protein Bsuib55_02641 [Brucella suis bv. 5 str. 513]
 gi|261750214|ref|ZP_05993923.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261739967|gb|EEY27893.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 442

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 70/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      + L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAISLATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|118468903|ref|YP_884831.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          smegmatis str. MC2 155]
 gi|118170190|gb|ABK71086.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          smegmatis str. MC2 155]
          Length = 635

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           SYDV+VIG G AG  A   A + G   A++T      G       +   G    +R ++
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLRVAVVTKSL--FGKAHT--VMAEGGCAAAMRNVN 62

Query: 64 ALDGLMGRVAD 74
            D       D
Sbjct: 63 TKDSWQVHFGD 73


>gi|77919769|ref|YP_357584.1| NADH oxidase [Pelobacter carbinolicus DSM 2380]
 gi|77545852|gb|ABA89414.1| NADH oxidase [Pelobacter carbinolicus DSM 2380]
          Length = 685

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+VIGGG AG EAA  AA++G    L   K
Sbjct: 385 NVVVIGGGTAGLEAACTAAEVGCDVHLFESK 415


>gi|325204028|gb|ADY99481.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M01-240355]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|325144252|gb|EGC66557.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M01-240013]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|319410289|emb|CBY90631.1| dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate
           dehydrogenase complex; dihydrolipoamide dehydrogenase)
           [Neisseria meningitidis WUE 2594]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|317488715|ref|ZP_07947252.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316912182|gb|EFV33754.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 551

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
            + YDV+VIG G +G  AA  A + GA  AL+  ++  I  
Sbjct: 80  TKDYDVVVIGAGASGVPAALSAFEAGAKVALLQKESQAIAQ 120


>gi|308389605|gb|ADO31925.1| putative dihydrolipoamide dehydrogenase E3 component [Neisseria
           meningitidis alpha710]
 gi|325130105|gb|EGC52888.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis OX99.30304]
 gi|325136108|gb|EGC58717.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M0579]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|304387738|ref|ZP_07369918.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis ATCC 13091]
 gi|304338214|gb|EFM04344.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis ATCC 13091]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|296164938|ref|ZP_06847494.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899780|gb|EFG79230.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 520

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD IV+G GH G  AAA+  + G  T  +   T
Sbjct: 3  DYDAIVVGAGHNGLTAAAILQRAGLRTLCLEANT 36


>gi|296157035|ref|ZP_06839872.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1]
 gi|295892921|gb|EFG72702.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G    L 
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVGLF 35


>gi|323528523|ref|YP_004230675.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1001]
 gi|323385525|gb|ADX57615.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1001]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G    L 
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVGLF 35


>gi|282900015|ref|ZP_06307975.1| Putative oxidoreductase [Cylindrospermopsis raciborskii CS-505]
 gi|281195113|gb|EFA70050.1| Putative oxidoreductase [Cylindrospermopsis raciborskii CS-505]
          Length = 530

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          I +SYDV+V GGGH G  AA   AK G S  ++  +   +G
Sbjct: 9  IQKSYDVVVAGGGHNGLIAACYIAKAGRSVLVLEQQ-DKVG 48


>gi|254804839|ref|YP_003083060.1| 2-oxoglutarate dehydrogenase complex, E3 component [Neisseria
           meningitidis alpha14]
 gi|254668381|emb|CBA05485.1| 2-oxoglutarate dehydrogenase complex, E3 component [Neisseria
           meningitidis alpha14]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|240125624|ref|ZP_04738510.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae SK-92-679]
 gi|268684213|ref|ZP_06151075.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624497|gb|EEZ56897.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           SK-92-679]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|239998849|ref|ZP_04718773.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae 35/02]
 gi|268594692|ref|ZP_06128859.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae 35/02]
 gi|268548081|gb|EEZ43499.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae 35/02]
 gi|317164137|gb|ADV07678.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|257792095|ref|YP_003182701.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|325831694|ref|ZP_08164911.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257475992|gb|ACV56312.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
 gi|325486565|gb|EGC89014.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 551

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
            + YDV+VIG G +G  AA  A + GA  AL+  ++  I  
Sbjct: 80  TKDYDVVVIGAGASGVPAALSAFEAGAKVALLQKESQAIAQ 120


>gi|225075115|ref|ZP_03718314.1| hypothetical protein NEIFLAOT_00114 [Neisseria flavescens
           NRL30031/H210]
 gi|224953599|gb|EEG34808.1| hypothetical protein NEIFLAOT_00114 [Neisseria flavescens
           NRL30031/H210]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|222100680|ref|YP_002535248.1| Thioredoxin reductase [Thermotoga neapolitana DSM 4359]
 gi|221573070|gb|ACM23882.1| Thioredoxin reductase [Thermotoga neapolitana DSM 4359]
          Length = 317

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 43/172 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   YD++V+G G AG  +A  A + G S                           LV E
Sbjct: 14  IKDKYDIVVVGAGPAGLASAIYARRAGLSV--------------------------LVVE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G +        +   V N    P + G    +  + +  +   EI +        
Sbjct: 48  KAIEGGYV-------NLTHLVENYPGFPKISGEELASKFKEHAESFGAEIYN-------- 92

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            EV     +++    + + D   I    V++ TG   +  +++   K   GR
Sbjct: 93  AEVVKLEVKEDK-KVVELDDGKRIEAPVVIVATGANPK-RLNVPGEKEFFGR 142


>gi|161869869|ref|YP_001599038.1| dihydrolipoamide dehydrogenase [Neisseria meningitidis 053442]
 gi|161595422|gb|ABX73082.1| dihydrolipoamide dehydrogenase E3 component [Neisseria meningitidis
           053442]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|187919141|ref|YP_001888172.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
 gi|187717579|gb|ACD18802.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G    L 
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVGLF 35


>gi|91779350|ref|YP_554558.1| putative oxidoreductase [Burkholderia xenovorans LB400]
 gi|91692010|gb|ABE35208.1| putative oxidoreductase [Burkholderia xenovorans LB400]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G    L 
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVGLF 35


>gi|59801311|ref|YP_208023.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae FA 1090]
 gi|240014236|ref|ZP_04721149.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae DGI18]
 gi|240016672|ref|ZP_04723212.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae FA6140]
 gi|240080861|ref|ZP_04725404.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae FA19]
 gi|240115526|ref|ZP_04729588.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae PID18]
 gi|240117821|ref|ZP_04731883.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae PID1]
 gi|240121799|ref|ZP_04734761.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae PID24-1]
 gi|240123376|ref|ZP_04736332.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae PID332]
 gi|240128080|ref|ZP_04740741.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae SK-93-1035]
 gi|260440663|ref|ZP_05794479.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae DGI2]
 gi|261379705|ref|ZP_05984278.1| dihydrolipoyl dehydrogenase [Neisseria subflava NJ9703]
 gi|268596978|ref|ZP_06131145.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae FA19]
 gi|268601201|ref|ZP_06135368.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID18]
 gi|268603521|ref|ZP_06137688.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID1]
 gi|268682001|ref|ZP_06148863.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID332]
 gi|268686469|ref|ZP_06153331.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043971|ref|ZP_06569687.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae DGI2]
 gi|293399171|ref|ZP_06643336.1| dihydrolipoyl dehydrogenase [Neisseria gonorrhoeae F62]
 gi|59718206|gb|AAW89611.1| putative dihydrolipoamide dehydrogenase E3 component [Neisseria
           gonorrhoeae FA 1090]
 gi|268550766|gb|EEZ45785.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae FA19]
 gi|268585332|gb|EEZ50008.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID18]
 gi|268587652|gb|EEZ52328.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID1]
 gi|268622285|gb|EEZ54685.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           PID332]
 gi|268626753|gb|EEZ59153.1| dihydrolipoamide dehydrogenase E3 component [Neisseria gonorrhoeae
           SK-93-1035]
 gi|284797372|gb|EFC52719.1| dihydrolipoyl dehydrogenase [Neisseria subflava NJ9703]
 gi|291012434|gb|EFE04423.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae DGI2]
 gi|291610585|gb|EFF39695.1| dihydrolipoyl dehydrogenase [Neisseria gonorrhoeae F62]
 gi|325128085|gb|EGC50980.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis N1568]
 gi|325132161|gb|EGC54857.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M6190]
 gi|325134127|gb|EGC56779.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M13399]
 gi|325138093|gb|EGC60666.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis ES14902]
 gi|325206213|gb|ADZ01666.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M04-240196]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVR 60
            YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG     G      
Sbjct: 3   QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGTCLNVGCIPSKA 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------RELYRLAMQREIL 112
            + + +       D A     V +VK   A    R  A         + L++      + 
Sbjct: 60  LLQSSEHFHAAQHDFAEHGITVGDVKFDAAKMIERKDAIVTKLTGGVKFLFQKNKVTSLF 119

Query: 113 SQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  +N D  Q EV                   +I    V++ TG+
Sbjct: 120 GTASFAGKNGDAYQIEVDN--------KGEKT----VIEAKHVIVATGS 156


>gi|325959111|ref|YP_004290577.1| hypothetical protein Metbo_1365 [Methanobacterium sp. AL-21]
 gi|325330543|gb|ADZ09605.1| HI0933 family protein [Methanobacterium sp. AL-21]
          Length = 412

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +N+  D+ V+G G AG  AA  A+  G S  L         S      I G G+ +L  
Sbjct: 1  MNKIIDLAVVGAGPAGMMAAITASSNGNSVIL----IEKNNSAGKKLLITGNGRCNLTN 55


>gi|325298412|ref|YP_004258329.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bacteroides salanitronis DSM 18170]
 gi|324317965|gb|ADY35856.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bacteroides salanitronis DSM 18170]
          Length = 549

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                          N + G  
Sbjct: 85  VIVVGAGPGGLFAALKLIELGLRPIVVERGKNVRERKEDLARISREHKVDAESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVEKILNVFCQHGADTSILIDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E N ++ I        R   V+L TG   R V 
Sbjct: 199 NMRNTILACGGEVHFQTRMDALIIEHNEVAGIETNTGKTFRGP-VILATGHSARDVY 254


>gi|297812581|ref|XP_002874174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320011|gb|EFH50433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 518

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 14/153 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         +      P        +G     
Sbjct: 49  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCL 108

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N               R  +   ++R+  S  N
Sbjct: 109 EDIDAQKATGFAVYKDGKEAVAPFPVENNNFSYEPSARSFHNGR--FVQQLRRKASSLPN 166

Query: 117 LDVIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
           + + +G V     EK +I  +    ++    R 
Sbjct: 167 VRLEEGTVKSLIEEKGVIKGVTYKNKEGEETRA 199


>gi|251780631|ref|ZP_04823551.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084946|gb|EES50836.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 318

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPAIGGLGKG 56
           YD++VIGGG AG  AA  AA+ G +  LI    H    I +   +   G    G
Sbjct: 3  KYDLVVIGGGIAGMTAALGAAREGINNILIVEREHSLGGILNQCIHNDFGEKFVG 57


>gi|269122357|ref|YP_003310534.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
 gi|268616235|gb|ACZ10603.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
          Length = 562

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            + YDVIVIGGG AG  +A  A++LGA TAL+
Sbjct: 104 EKEYDVIVIGGGPAGYISANKASQLGAKTALV 135


>gi|85858088|ref|YP_460290.1| thioredoxin reductase [Syntrophus aciditrophicus SB]
 gi|85721179|gb|ABC76122.1| thioredoxin reductase [Syntrophus aciditrophicus SB]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IV+GGG AG  A   AA+ G    L+
Sbjct: 11 YDIIVVGGGPAGLTAGLYAARGGLKALLL 39


>gi|308178496|ref|YP_003917902.1| heterotetrameric sarcosine oxidase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|114794037|pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
 gi|63146664|gb|AAY34150.1| heterotetrameric sarcosine oxidase beta-subunit [Stenotrophomonas
           maltophilia]
 gi|307745959|emb|CBT76931.1| heterotetrameric sarcosine oxidase beta-subunit [Arthrobacter
           arilaitensis Re117]
          Length = 405

 Score = 44.6 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 74/246 (30%), Gaps = 67/246 (27%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAK-------------------LGASTALITHK------ 37
            +SYD I++GGG  G   A   AK                   +  +T +I         
Sbjct: 19  KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDES 78

Query: 38  -----------------------TSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74
                                   S  G ++    +G + +     E + L+G+     D
Sbjct: 79  AGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLD 138

Query: 75  AAGIQFR--VLNVKKG------PAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVA 125
            + ++    ++N           A   PR    +  +         ++  +D+IQ  EV 
Sbjct: 139 PSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVT 198

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG---RMGDSPSNSL 182
           GF  +   ++ +       I    V       L G  H   L   AG    +   P  +L
Sbjct: 199 GFIKDGEKVTGVKTTRG-TIHAGKVA------LAGAGHSSVLAEMAGFELPIQSHPLQAL 251

Query: 183 FNSFMK 188
            +   +
Sbjct: 252 VSELFE 257


>gi|330808516|ref|YP_004352978.1| NAD(P)(+) transhydrogenase (B-specific), (soluble pyridine
          nucleotide transhydrogenase) [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
 gi|327376624|gb|AEA67974.1| NAD(P)(+) transhydrogenase (B-specific), (soluble pyridine
          nucleotide transhydrogenase) [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|312959642|ref|ZP_07774159.1| Soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens WH6]
 gi|311286359|gb|EFQ64923.1| Soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens WH6]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|312882626|ref|ZP_07742365.1| NAD(FAD)-utilizing dehydrogenase [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309369711|gb|EFP97224.1| NAD(FAD)-utilizing dehydrogenase [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV+++G G AG   AA A K G S  L+ H
Sbjct: 1  MTEKFDVVIVGAGAAGLMCAAEAGKRGRSVLLLEH 35


>gi|269118668|ref|YP_003306845.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
 gi|268612546|gb|ACZ06914.1| dihydrolipoamide dehydrogenase [Sebaldella termitidis ATCC 33386]
          Length = 563

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            + YDVIVIGGG AG  +A  A++LGA TAL+
Sbjct: 104 EKEYDVIVIGGGPAGYISANKASQLGAKTALV 135


>gi|237751624|ref|ZP_04582104.1| thioredoxin reductase [Helicobacter bilis ATCC 43879]
 gi|229372990|gb|EEO23381.1| thioredoxin reductase [Helicobacter bilis ATCC 43879]
          Length = 318

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 32/156 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YDV+++G G  G  +A    K+G    ++  KT  I +M                   
Sbjct: 2   KIYDVVIVGAGPGGIASAIECKKMGIENIVLLEKTDNISAM------------------- 42

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGP----AVRGPRTQADRELYRLAMQREILSQENLDV 119
                   + +      RV    KG     A   P +  ++E       + +        
Sbjct: 43  --------IREYYKDGKRVDKDYKGQVVTLAGHIPFSDGNKESTLDLFSKLLDENSVEIK 94

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +Q EV   + + +I   +   +N       V++  G
Sbjct: 95  LQHEVDNVSKKDSIFI-VRTTNNVEFHAKHVIIGIG 129


>gi|229589091|ref|YP_002871210.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens SBW25]
 gi|259511768|sp|C3K4W1|STHA_PSEFS RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|229360957|emb|CAY47817.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens SBW25]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|167547404|gb|ABZ82479.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          corrugata]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|119721026|gb|ABC71791.1| pyridine nucleotide transhydrogenase [Pseudomonas fluorescens]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|170720854|ref|YP_001748542.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas putida
          W619]
 gi|229558525|sp|B1J606|STHA_PSEPW RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|169758857|gb|ACA72173.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Pseudomonas putida W619]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|104782721|ref|YP_609219.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          entomophila L48]
 gi|123079128|sp|Q1I7F0|STHA_PSEE4 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|95111708|emb|CAK16432.1| soluble pyridine nucleotide transhydrogenase (NAD(P)(+)
          transhydrogenase [B-specific]) [Pseudomonas entomophila
          L48]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|70729340|ref|YP_259077.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens Pf-5]
 gi|118573886|sp|Q4KFA6|STHA_PSEF5 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|68343639|gb|AAY91245.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens Pf-5]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|77460083|ref|YP_349590.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens Pf0-1]
 gi|118573887|sp|Q3K9F5|STHA_PSEPF RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|77384086|gb|ABA75599.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens Pf0-1]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|11135075|sp|O05139|STHA_PSEFL RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|1907384|gb|AAB50562.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          fluorescens]
          Length = 464

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|325284794|ref|YP_004264257.1| dihydrolipoamide dehydrogenase [Deinococcus proteolyticus MRP]
 gi|324316283|gb|ADY27397.1| dihydrolipoamide dehydrogenase [Deinococcus proteolyticus MRP]
          Length = 468

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+VIGGG AG  AA  AA+LG   A +
Sbjct: 3  SYDVLVIGGGPAGYVAAIRAAQLGFKVACV 32


>gi|294085311|ref|YP_003552071.1| hypothetical protein SAR116_1744 [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292664886|gb|ADE39987.1| hypothetical protein SAR116_1744 [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 470

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV++IG G+AG  AA  AA+ G S  ++
Sbjct: 1  MSERWDVLIIGAGNAGICAAITAAEAGCSVLVL 33


>gi|227510645|ref|ZP_03940694.1| thioredoxin-disulfide reductase [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227190297|gb|EEI70364.1| thioredoxin-disulfide reductase [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 316

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+VIG G  G  AA  A++   S A+I
Sbjct: 1  MAKNYDVVVIGAGPGGMTAALYASRANLSVAMI 33


>gi|227524805|ref|ZP_03954854.1| thioredoxin-disulfide reductase [Lactobacillus hilgardii ATCC
          8290]
 gi|227088020|gb|EEI23332.1| thioredoxin-disulfide reductase [Lactobacillus hilgardii ATCC
          8290]
          Length = 316

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+VIG G  G  AA  A++   S A+I
Sbjct: 1  MAKNYDVVVIGAGPGGMTAALYASRANLSVAMI 33


>gi|227513660|ref|ZP_03943709.1| thioredoxin-disulfide reductase [Lactobacillus buchneri ATCC
          11577]
 gi|227083176|gb|EEI18488.1| thioredoxin-disulfide reductase [Lactobacillus buchneri ATCC
          11577]
          Length = 316

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+VIG G  G  AA  A++   S A+I
Sbjct: 1  MAKNYDVVVIGAGPGGMTAALYASRANLSVAMI 33


>gi|225574287|ref|ZP_03782897.1| hypothetical protein RUMHYD_02351 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038509|gb|EEG48755.1| hypothetical protein RUMHYD_02351 [Blautia hydrogenotrophica DSM
           10507]
          Length = 461

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 30/166 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-----TSTIGSMSCNPAIGGLGKG 56
           + R++D+IV+G G  G  AA   A+LG   A++  K        IG +     I      
Sbjct: 1   MERTFDLIVLGAGPGGYVAAIRGAQLGMKVAVLEKKHVGGVCLNIGCIPSKNLISSAA-- 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            LV     L G  G   D  G  +       G      R  A+     +   R +L +  
Sbjct: 59  -LVSGAGKLAGF-GVRTDFTGFDY-------GSVHAQSRMAAETLSKGI---RYLLDKNG 106

Query: 117 LDVIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGTFLR 159
           + +++        E   I+    +       +    +++ TG+  R
Sbjct: 107 VTLVE--------EAGRITGPREVTTASGEKLSAQNIIVATGSRPR 144


>gi|154496935|ref|ZP_02035631.1| hypothetical protein BACCAP_01228 [Bacteroides capillosus ATCC
          29799]
 gi|150273759|gb|EDN00876.1| hypothetical protein BACCAP_01228 [Bacteroides capillosus ATCC
          29799]
          Length = 540

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YDV+VIGGG AG  AA   A+      ++  
Sbjct: 4  MEHLYDVVVIGGGPAGLTAALYLARARYRVVVVEQ 38


>gi|99081737|ref|YP_613891.1| putative FAD-binding dehydrogenase [Ruegeria sp. TM1040]
 gi|99038017|gb|ABF64629.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
          protein [Ruegeria sp. TM1040]
          Length = 557

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGKGHLVR 60
          +   DVIVIG G AG  AA   A  G    L+  + +       + ++GG  +      R
Sbjct: 7  DNHADVIVIGAGLAGLVAANELADRGKRVILLEQEPAHFIGGQAHWSLGGLFMVDTPEQR 66

Query: 61 EIDALDGLMGRVADAAGIQ 79
           +   D L     D AG  
Sbjct: 67 RMGIRDSLDLAQRDWAGSA 85


>gi|303257928|ref|ZP_07343937.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
 gi|331000104|ref|ZP_08323799.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|302859271|gb|EFL82353.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
 gi|329572988|gb|EGG54608.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 499

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP----AIGGLG 54
            +YDV++IG G AG  AA  A + G  + L+  K +  G  SC      ++ G G
Sbjct: 36 TETYDVVIIGSGFAGLAAAYSALENGVKSVLVLEKMNVFGGNSCINGGQISLAGSG 91


>gi|299532275|ref|ZP_07045668.1| HI0933-like protein [Comamonas testosteroni S44]
 gi|298719683|gb|EFI60647.1| HI0933-like protein [Comamonas testosteroni S44]
          Length = 421

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 1  MINRSY--DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          M +  +  DV VIG G AG  AA   AK G S  +         S +    + G G  +L
Sbjct: 1  MADSEWVCDVAVIGAGPAGLMAAEQLAKAGLSVRVF----EAKASAARKFLMAGKGGLNL 56

Query: 59 VRE 61
             
Sbjct: 57 THS 59


>gi|264679315|ref|YP_003279222.1| HI0933-like protein [Comamonas testosteroni CNB-2]
 gi|262209828|gb|ACY33926.1| HI0933-like protein [Comamonas testosteroni CNB-2]
          Length = 428

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 1  MINRSY--DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          M +  +  DV VIG G AG  AA   AK G S  +         S +    + G G  +L
Sbjct: 8  MADSEWVCDVAVIGAGPAGLMAAEQLAKAGLSVRVF----EAKASAARKFLMAGKGGLNL 63

Query: 59 VRE 61
             
Sbjct: 64 THS 66


>gi|226362795|ref|YP_002780573.1| NADH-dependent oxidoreductase [Rhodococcus opacus B4]
 gi|226241280|dbj|BAH51628.1| NADH-dependent oxidoreductase [Rhodococcus opacus B4]
          Length = 656

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLGKGHLVR 60
           DV+V+GGG AG +AA VAA+ G    L         +      +      GG    +L  
Sbjct: 391 DVMVVGGGPAGMKAAVVAAQRGHRVTLYEAGGRVGGQVLLAERLPGRSEFGGAA-TNLQS 449

Query: 61  EIDALDGLMGR--VADAAGIQFRVLNV---KKGPAVRGPRTQADRELYRLAMQREI 111
           E+D    ++      DAA I     +      G     P  + D ++  L     I
Sbjct: 450 ELDRYGVIVKTRVEVDAAMIAAERPDRVIIATGATPYRPPLELDGDMPVLDAWDVI 505


>gi|171185189|ref|YP_001794108.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoproteus neutrophilus V24Sta]
 gi|170934401|gb|ACB39662.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoproteus neutrophilus V24Sta]
          Length = 321

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +   YDVI+IG G AG  AA  A++    T +I+   
Sbjct: 1  MEADYDVIIIGAGIAGLSAALYASRQRLRTLVISRDL 37


>gi|225165003|ref|ZP_03727210.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224800393|gb|EEG18782.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 438

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 15/183 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G  G  A+  AA+ GAS  L+  +   IG    +  +G +     VR      
Sbjct: 26  DVLVLGAGPGGVAASIAAARNGASVILVE-RFGLIGGTWTSGHLGAIMPFPFVR------ 78

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GL   ++D        L+ K      G     D E+ ++ + R +           +VAG
Sbjct: 79  GLFEELSDRLRDAGGWLSTK---NTYGSGATYDIEVAKIVLDRFVTEAGVRPYFFAQVAG 135

Query: 127 FNTEKNIISSIVM---QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
              E N IS +V+   Q   ++    V+  TG     V  +  +    GR  D     + 
Sbjct: 136 VFREGNRISGVVIESKQGRHVLTGRMVIDATGD--GDVSVLAGVPFAQGRDSDQGCQPMS 193

Query: 184 NSF 186
             F
Sbjct: 194 MIF 196


>gi|90416063|ref|ZP_01223996.1| 2-oxoglutarate dehydrogenase, lipoamide dehydrogenase component
          [marine gamma proteobacterium HTCC2207]
 gi|90332437|gb|EAS47634.1| 2-oxoglutarate dehydrogenase, lipoamide dehydrogenase component
          [marine gamma proteobacterium HTCC2207]
          Length = 479

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIG G AG  +A  AA+LG  TA I
Sbjct: 1  MSEKYDVIVIGSGPAGYVSAIRAAQLGLKTACI 33


>gi|88607350|ref|YP_504998.1| dihydrolipoamide dehydrogenase [Anaplasma phagocytophilum HZ]
 gi|88598413|gb|ABD43883.1| dihydrolipoamide dehydrogenase [Anaplasma phagocytophilum HZ]
          Length = 468

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLG 54
          M + +YDV VIG G  G + A  AAKLG S   I   +        +G +     +    
Sbjct: 1  MGSSNYDVAVIGAGPGGYKCAIKAAKLGLSVVCIDKNSQWGGTCLRVGCIPSKAMLEYSY 60

Query: 55 KGHLVREIDALDGLMGR 71
          K H  +++    G+M +
Sbjct: 61 KFHSAKDLFPKLGVMAK 77


>gi|329117278|ref|ZP_08245995.1| alkyl hydroperoxide reductase, F subunit [Streptococcus parauberis
           NCFD 2020]
 gi|326907683|gb|EGE54597.1| alkyl hydroperoxide reductase, F subunit [Streptococcus parauberis
           NCFD 2020]
          Length = 511

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV+VIGGG AG  +A  AA+ G  T L+ 
Sbjct: 209 YDVLVIGGGPAGNSSAIYAARKGLKTGLLA 238



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           DV VIGGG++G EAA   A L     ++        
Sbjct: 350 DVAVIGGGNSGMEAALDLAGLCKQVTVLEFLPEVKA 385


>gi|317123364|ref|YP_004097476.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Intrasporangium calvum DSM 43043]
 gi|315587452|gb|ADU46749.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Intrasporangium calvum DSM 43043]
          Length = 460

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVRE 61
           S+D+IV+G G  G   A   A+ G     + H           C P    +     + E
Sbjct: 2  ESFDIIVVGMGPGGEHVANTLAERGLRVLGVDHGLVGGECPYWGCIPTKMMVRAADALAE 61

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
             +DGL G VAD       V    +  A  G   Q 
Sbjct: 62 ARRVDGLAGSVADVTPDWSLVARRIRDEATDGWDDQV 98


>gi|318041730|ref|ZP_07973686.1| monooxygenase, FAD-binding protein, putative [Synechococcus sp.
           CB0101]
          Length = 398

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +V+G G AG   A   A+ G S  L+        S   + A  G       +E  A  GL
Sbjct: 5   VVVGAGPAGLSLALQLAQAGHSVHLVE------ASRQFSRAFRGDALMPCGQEALARMGL 58

Query: 69  MGRVADAA----GIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQ----ENLD 118
           +  ++             +N ++    A      Q  R + + A+   +L Q      L 
Sbjct: 59  LPLLSALPQRPLTGWSVWVNQRRLFSVAEPMGSLQPCRLVTQQALLEALLHQALQEPTLH 118

Query: 119 VIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              G  V     +   IS + + D + +    VV   G
Sbjct: 119 WHPGQAVKALRRKGQRISGVQLADGTALDADLVVGCDG 156


>gi|307727199|ref|YP_003910412.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1003]
 gi|307587724|gb|ADN61121.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1003]
          Length = 379

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G    L 
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVGLF 35


>gi|237747762|ref|ZP_04578242.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379124|gb|EEO29215.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 535

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 27/174 (15%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITH-------KTSTIG---SMSCNP----AIGGLG 54
           IV+G G  G  AA + A+ G    ++            T G       NP      G  G
Sbjct: 100 IVVGCGPCGLFAALILAQSGFKPIILERGKNVRERTRDTFGFWRERQLNPESNVQFGEGG 159

Query: 55  KGHL--------VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
            G          +++       +      +G    +L + K         +  R +    
Sbjct: 160 AGTFSDGKLHTQIKDPKHYGRKVLTELVKSGAPEEILYIGK---PHIGTFKLVRII--EE 214

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           M+ EI+S       +  V     E   I  +V+QD        V+L  G   R 
Sbjct: 215 MRDEIISLGGEYHYESRVDDLIIENGQIQGVVLQDGRTFHSDHVILAPGHSARD 268


>gi|83319334|ref|YP_424728.1| thioredoxin reductase [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
 gi|83283220|gb|ABC01152.1| thioredoxin reductase [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + N  YDVIV+G G AG  +A   A+ G  T +    
Sbjct: 4  LTNEIYDVIVVGSGPAGLTSAIYTARAGLKTVIYEQS 40


>gi|85703651|ref|ZP_01034755.1| phytoene dehydrogenase [Roseovarius sp. 217]
 gi|85672579|gb|EAQ27436.1| phytoene dehydrogenase [Roseovarius sp. 217]
          Length = 545

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          S+D I+IG GH G  AAA  A+ G    ++            N  IGG      + E
Sbjct: 6  SFDAIIIGAGHNGLTAAAYLARAGRQVLVVE----------KNDWIGGAAVSRSLHE 52


>gi|194292960|ref|YP_002008867.1| monooxygenase, fad-binding [Cupriavidus taiwanensis LMG 19424]
 gi|193226864|emb|CAQ72815.1| Putative monooxygenase, FAD-binding [Cupriavidus taiwanensis LMG
           19424]
          Length = 409

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 30/174 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   + DV++IG G AG  AA +  K G    +I     T        +IG       + 
Sbjct: 1   MKTETTDVVIIGAGPAGSVAAGLLRKHGIPVLVIE--KETFPRF----SIGESLLPQSMA 54

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQ----E 115
            I+     M R    AG Q++        A    RT  D R+ Y          Q    +
Sbjct: 55  YIEEAG--MLRAVVEAGFQYK---NGAAFARGTQRTAFDFRQKYSPGWGTTYQVQRAQFD 109

Query: 116 NLDVIQGEVAGF------NTEKNIISS------IVMQDNSMI--RCSTVVLTTG 155
           ++ + + E  G         E   +S       +   D S    R   ++  +G
Sbjct: 110 HVLIREAERQGAEVRFAHLVENVDVSGPQPEVTVRAPDGSQYTVRAKFLLDASG 163


>gi|146328162|emb|CAM58079.1| hypothetical protein [uncultured marine microorganism]
          Length = 475

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++RS+DV+VIG G AG  AA  A++LG + A          ++    A GG 
Sbjct: 1  MSRSFDVVVIGAGPAGYVAAIRASQLGMNVAC----IDEWENLDGKNAFGGT 48


>gi|159040798|ref|YP_001540050.1| thioredoxin reductase [Caldivirga maquilingensis IC-167]
 gi|157919633|gb|ABW01060.1| thioredoxin reductase [Caldivirga maquilingensis IC-167]
          Length = 343

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 50/165 (30%), Gaps = 43/165 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D ++IGGG AG  AA  AA+ G ST +IT                         EI    
Sbjct: 33  DTVIIGGGPAGLSAAMYAARFGLSTVVIT------------------------EEIGGQV 68

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G  G V D  G             + GP      E +            N+ ++   V  
Sbjct: 69  GKAGWVEDYLGYVR----------ITGPDLVNKFEEHVRYY--------NVPILIDSVER 110

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
                ++   +           TV++  G   R +   G+ K   
Sbjct: 111 ITISNDLFK-VTTVSGDEFTSRTVIIAVGERRRKLNVPGEDKYSG 154


>gi|158522437|ref|YP_001530307.1| ribulose-1,5-biphosphate synthetase [Desulfococcus oleovorans
          Hxd3]
 gi|238686892|sp|A8ZVP3|THI4_DESOH RecName: Full=Putative thiazole biosynthetic enzyme
 gi|158511263|gb|ABW68230.1| thiazole biosynthesis enzyme [Desulfococcus oleovorans Hxd3]
          Length = 258

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          DV V+GGG +G  AA   A+ G   AL   K S  G M
Sbjct: 27 DVAVVGGGPSGLVAAWRLARAGRKVALFERKLSIGGGM 64


>gi|116073361|ref|ZP_01470623.1| dihydrolipoamide dehydrogenase [Synechococcus sp. RS9916]
 gi|116068666|gb|EAU74418.1| dihydrolipoamide dehydrogenase [Synechococcus sp. RS9916]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA  G   A++       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAADHGLKVAILE-SRDMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   D L G    +A ++F 
Sbjct: 66 LADADHLQGFGIHSAPVRFE 85


>gi|329938356|ref|ZP_08287781.1| iron-sulfur binding oxidoreductase [Streptomyces griseoaurantiacus
           M045]
 gi|329302329|gb|EGG46220.1| iron-sulfur binding oxidoreductase [Streptomyces griseoaurantiacus
           M045]
          Length = 509

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 23/107 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+GGG AG   A   A+ G   A++               + G   GH   ++ A  
Sbjct: 32  DVAVVGGGIAGLSTAWELAREGHRVAVLE-----------AGRLAGGVSGHTTAKLTAQH 80

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGP--RTQADRELYRLAMQREI 111
           GL+          +  L   +GP   G   R+Q +   +   +  E+
Sbjct: 81  GLV----------YEKLRRTRGPEAAGLYARSQYEAVRHAGEIAAEL 117


>gi|328873707|gb|EGG22074.1| hypothetical protein DFA_01964 [Dictyostelium fasciculatum]
          Length = 405

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 443 DNRLTPIGMKLGCIGE----RRQKRFAKYIQEYNFLR---SLLKSLVLTSKNLSSTSISF 495
           D RLT          E     R ++     +     R     L++  L  + L S  +  
Sbjct: 16  DQRLTERIENERLEKERLENERLEKERIEQERLETERLEQERLENERLEQERLESERLEK 75

Query: 496 KQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE--RLQIESSYAAYTGRQMIEA 553
           ++    R   E L       + L +   +  +  + ++E  R++ E        ++ +E 
Sbjct: 76  ERLENERLEKERLEKERIEQERLENERLEQERLENELLEKERVENERLEKERIEQERVEN 135

Query: 554 KEI--KFEEKRLI 564
           + +  +  E   +
Sbjct: 136 ERLEKERLENERL 148



 Score = 37.2 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 9/159 (5%)

Query: 415 LTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474
           LT +   E  R+   R E     +      RL    ++   +   R ++     +     
Sbjct: 19  LTERIENE--RLEKERLENERLEKERIEQERLETERLEQERLENERLEQERLESERLEKE 76

Query: 475 R---SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFS--ICPDARKFS 529
           R     L+   L  + +    +  ++  + R   E L       + L    I  +  +  
Sbjct: 77  RLENERLEKERLEKERIEQERLENERLEQERLENELLEKERVENERLEKERIEQERVENE 136

Query: 530 SLVIERLQIESSYAAYTGRQMIEAKEI--KFEEKRLIPK 566
            L  ERL+ E         + +E + +  +  E+  + K
Sbjct: 137 RLEKERLENERLEKERLENERLEQERLENERLEQERLSK 175


>gi|325202256|gb|ADY97710.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis M01-240149]
 gi|325207991|gb|ADZ03443.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis NZ-05/33]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|313668601|ref|YP_004048885.1| dihydrolipoamide dehydrogenase E3 component [Neisseria lactamica
          ST-640]
 gi|313006063|emb|CBN87524.1| putative dihydrolipoamide dehydrogenase E3 component [Neisseria
          lactamica 020-06]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|282891627|ref|ZP_06300116.1| hypothetical protein pah_c186o014 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281498490|gb|EFB40820.1| hypothetical protein pah_c186o014 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 632

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +VIV+GGG AG  AA   A+ G    +I+          C    G     + V E D
Sbjct: 9  NVIVVGGGLAGLSAAMKLAENGCHVKIISVTKVKRSHSVCAQG-GINAAINSVGEDD 64


>gi|261401144|ref|ZP_05987269.1| dihydrolipoyl dehydrogenase [Neisseria lactamica ATCC 23970]
 gi|269208922|gb|EEZ75377.1| dihydrolipoyl dehydrogenase [Neisseria lactamica ATCC 23970]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|261392696|emb|CAX50269.1| dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex; dihydrolipoamide dehydrogenase)
          [Neisseria meningitidis 8013]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|254672880|emb|CBA07153.1| 2-oxoglutarate dehydrogenase complex, E3 component [Neisseria
          meningitidis alpha275]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|254669445|emb|CBA03304.1| 2-oxoglutarate dehydrogenase complex, E3 component [Neisseria
          meningitidis alpha153]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|241760316|ref|ZP_04758411.1| dihydrolipoyl dehydrogenase [Neisseria flavescens SK114]
 gi|241319194|gb|EER55672.1| dihydrolipoyl dehydrogenase [Neisseria flavescens SK114]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|257063643|ref|YP_003143315.1| flavin-dependent dehydrogenase [Slackia heliotrinireducens DSM
          20476]
 gi|256791296|gb|ACV21966.1| flavin-dependent dehydrogenase [Slackia heliotrinireducens DSM
          20476]
          Length = 442

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
              +D IV+G G AG  AA   AK G S  ++                GG    H +  
Sbjct: 4  FEPDFDAIVVGAGLAGSVAAYELAKAGKSVLVV----ERGNFAGAKNMTGGRIYAHSLHS 59

Query: 62 I 62
          +
Sbjct: 60 V 60


>gi|229161394|ref|ZP_04289377.1| phytoene dehydrogenase enzyme [Bacillus cereus R309803]
 gi|228622065|gb|EEK78908.1| phytoene dehydrogenase enzyme [Bacillus cereus R309803]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +++DV++IGGG AG  A+   AK G    +          +         G+G  + +  
Sbjct: 2  KNFDVVIIGGGLAGLTASIYLAKAGRKVIV----LEKSSHLG--------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFIAFN 70


>gi|261377711|ref|ZP_05982284.1| dihydrolipoyl dehydrogenase [Neisseria cinerea ATCC 14685]
 gi|269145986|gb|EEZ72404.1| dihydrolipoyl dehydrogenase [Neisseria cinerea ATCC 14685]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|194098451|ref|YP_002001510.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae NCCP11945]
 gi|240112775|ref|ZP_04727265.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae MS11]
 gi|254493635|ref|ZP_05106806.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae 1291]
 gi|268598843|ref|ZP_06133010.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae MS11]
 gi|193933741|gb|ACF29565.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae NCCP11945]
 gi|226512675|gb|EEH62020.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae 1291]
 gi|268582974|gb|EEZ47650.1| dihydrolipoamide dehydrogenase [Neisseria gonorrhoeae MS11]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|121634758|ref|YP_975003.1| dihydrolipoamide dehydrogenase [Neisseria meningitidis FAM18]
 gi|120866464|emb|CAM10210.1| putative dihydrolipoamide dehydrogenase E3 component [Neisseria
          meningitidis FAM18]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|118617219|ref|YP_905551.1| L-aspartate oxidase [Mycobacterium ulcerans Agy99]
 gi|118569329|gb|ABL04080.1| l-aspartate oxidase NadB [Mycobacterium ulcerans Agy99]
          Length = 524

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 36/185 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG----------KG 56
           DV+VIG G AG  AA  A + G S  L+   T T+G+ + + A GG+             
Sbjct: 12  DVVVIGTGVAGLAAALSAHRAGRSVVLLNKATDTVGATATHYAQGGIAVVLPGGDDSVDA 71

Query: 57  HLVREIDALDGLMGR-------------VADAAGIQFRVLNVKKG------PAVRGPR-- 95
           H+   + A  GL                V D  G   +      G            R  
Sbjct: 72  HVADTVTAGAGLCDLEAVYSIVADGFRAVTDLVGDGAKFDETSTGRWALTREGGHSRRRI 131

Query: 96  TQADRELYRLAMQREILSQEN-LDVIQGEVA-GFNTEKNIISSIVMQDN---SMIRCSTV 150
             A  +     +QR +      LD+    VA     +   ++ +++ +     +I   +V
Sbjct: 132 VHAGGDATGAEVQRALDQAAGLLDIRASHVALRILHDDTAVTGVLVLNPNGVGIISAPSV 191

Query: 151 VLTTG 155
           +L TG
Sbjct: 192 ILATG 196


>gi|790864|gb|AAA96487.1| putative [Neisseria gonorrhoeae]
          Length = 459

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|83593213|ref|YP_426965.1| dihydrolipoamide dehydrogenase [Rhodospirillum rubrum ATCC 11170]
 gi|83576127|gb|ABC22678.1| dihydrolipoamide dehydrogenase [Rhodospirillum rubrum ATCC 11170]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
          M   S+DV+V+G G  G  AA  AA+LG  TA++      +G +     C P    L   
Sbjct: 1  MTETSFDVVVLGAGPGGYVAAIRAAQLGLKTAVVE--REHLGGICLNWGCIPTKALLRSA 58

Query: 57 HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           + R+I        +V  A      V+   +G A +
Sbjct: 59 EVFRQIRHAGAYGLKVTGAEVDVAAVVKRSRGVAKQ 94


>gi|15676850|ref|NP_273995.1| dihydrolipoamide dehydrogenase [Neisseria meningitidis MC58]
 gi|7226197|gb|AAF41363.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Neisseria meningitidis MC58]
 gi|316985359|gb|EFV64308.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis H44/76]
 gi|325140154|gb|EGC62681.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis CU385]
 gi|325200359|gb|ADY95814.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis H44/76]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|57642035|ref|YP_184513.1| thioredoxin reductase [Thermococcus kodakarensis KOD1]
 gi|57160359|dbj|BAD86289.1| thioredoxin reductase [Thermococcus kodakarensis KOD1]
          Length = 330

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +++DV++IG G AG  AA  AA+ G  T +I+   
Sbjct: 15 KKTWDVLIIGAGPAGFTAAIYAARYGLETLIISKDL 50


>gi|218768040|ref|YP_002342552.1| dihydrolipoamide dehydrogenase [Neisseria meningitidis Z2491]
 gi|121052048|emb|CAM08357.1| putative dihydrolipoamide dehydrogenase E3 component [Neisseria
          meningitidis Z2491]
 gi|325142238|gb|EGC64655.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis 961-5945]
 gi|325198189|gb|ADY93645.1| dihydrolipoyl dehydrogenase [Neisseria meningitidis G2136]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNA---PALGGT 48


>gi|332363128|gb|EGJ40913.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK49]
          Length = 391

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 22/168 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    D
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLIEKNK----RLGKKLAGTGGGRCNVTNNGD 57

Query: 64  ALDGLM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQE 115
             D L      GR   +   QF   ++       G + + +   R        R I   E
Sbjct: 58  LDDLLAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPVTDKSRTI--IE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
            L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 116 ALEKKIAELGGTVITNTEIVSVKKTDELFTVRSSDQTWTCQKLIVTTG 163


>gi|332295975|ref|YP_004437898.1| Dihydrolipoyl dehydrogenase [Thermodesulfobium narugense DSM 14796]
 gi|332179078|gb|AEE14767.1| Dihydrolipoyl dehydrogenase [Thermodesulfobium narugense DSM 14796]
          Length = 450

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 45/188 (23%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           +   +D I++G G AG E A    + G S  L+      IG       C P    +   H
Sbjct: 1   MENKFDAIILGAGPAGYECALYLGERGKSVCLVDKSEENIGGTCLNEGCIPVKSLVESAH 60

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           LV+        M    D   + FR+                    Y  A++  +  Q++ 
Sbjct: 61  LVQ-------RMKEYKDVFNVDFRI-------------------EYSNAVK-LLEDQKS- 92

Query: 118 DVIQGEVAGFNTEK-NIISS--------IVMQDNSMIRCSTVVLTTGTFLRGV----IHI 164
            + QG ++     K N+I           V  D       ++VL TG++ + +    I  
Sbjct: 93  QLRQGIISRLKRSKVNMIFGKGMLVTNNAVRVDGVDYFADSIVLATGSYPKSLSTLNIDE 152

Query: 165 GKLKIPAG 172
            K+   +G
Sbjct: 153 NKIISSSG 160


>gi|326383682|ref|ZP_08205367.1| putative oxidoreductase/HEAT repeat-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326197446|gb|EGD54635.1| putative oxidoreductase/HEAT repeat-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 905

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 22 DVLVIGGGTAGSMAALTAAENGADVLLL 49


>gi|319637658|ref|ZP_07992424.1| dihydrolipoyl dehydrogenase [Neisseria mucosa C102]
 gi|317400813|gb|EFV81468.1| dihydrolipoyl dehydrogenase [Neisseria mucosa C102]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G     PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGDA---PALGGT 48


>gi|313900697|ref|ZP_07834190.1| putative NADH oxidase [Clostridium sp. HGF2]
 gi|312954759|gb|EFR36434.1| putative NADH oxidase [Clostridium sp. HGF2]
          Length = 648

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++VIGGG AG EAA VA + G    L       +G +    A+  + K  L R I     
Sbjct: 383 ILVIGGGPAGMEAAFVAKRKGHHVILCEQS-DALGGLMKLAAV-PIAKQDLSRVIK---- 436

Query: 68  LMGRVADAAGIQFR 81
            M R    AG++ R
Sbjct: 437 YMARRLMQAGVEVR 450


>gi|302872360|ref|YP_003840996.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575219|gb|ADL43010.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 462

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 56/208 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAA------VAAK-----------------------LGASTA 32
           ++  YDVI++G G  G   A        AA                         G    
Sbjct: 1   MSTMYDVIIVGAGPCGIFTAYELVKTSSAANVVIFEKGRDIESRECPKRVTNVCSGCKPC 60

Query: 33  LITHKTSTIGS-----MSCNPAIGGL-----GKGHLVREIDALDGLMGRV---ADAAGIQ 79
            IT   S  G+     +S +P +GG      G+   V  I  +D +           G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFVGQSKAVELIRYVDSIYLENGADTKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDV-IQGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRFQDFLLAN--NIEIKFKTPVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             E    + +V +D S+ R   VV+  G
Sbjct: 179 IVEDGKAAGVVAEDGSIYRAKNVVICVG 206


>gi|298369261|ref|ZP_06980579.1| dihydrolipoyl dehydrogenase [Neisseria sp. oral taxon 014 str.
          F0314]
 gi|298283264|gb|EFI24751.1| dihydrolipoyl dehydrogenase [Neisseria sp. oral taxon 014 str.
          F0314]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G     PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGDA---PALGGT 48


>gi|262190184|ref|ZP_06048464.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae CT 5369-93]
 gi|262033943|gb|EEY52403.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae CT 5369-93]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G LV
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSLV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DA   L  +  +    +    N +KG
Sbjct: 59 NQPFDAFSALQQQAPEHPYSKVGRKNSEKG 88


>gi|255065291|ref|ZP_05317146.1| dihydrolipoyl dehydrogenase [Neisseria sicca ATCC 29256]
 gi|255050712|gb|EET46176.1| dihydrolipoyl dehydrogenase [Neisseria sicca ATCC 29256]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  TA +    +  G     PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGDA---PALGGT 48


>gi|229543757|ref|ZP_04432817.1| alkyl hydroperoxide reductase, F subunit [Bacillus coagulans 36D1]
 gi|229328177|gb|EEN93852.1| alkyl hydroperoxide reductase, F subunit [Bacillus coagulans 36D1]
          Length = 518

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 48/181 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG +G  AA  AA+ G  T ++       G                       
Sbjct: 209 FDVLVIGGGPSGASAAIYAARKGIRTGIVA---ERFG----------------------- 242

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
               G+V D  GI+    N+       GP+  A+ E +          Q N+D++     
Sbjct: 243 ----GQVLDTVGIE----NLIGTKYTEGPQLAANLEEHVK--------QYNVDIM-NLQR 285

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSN 180
               EK  +  + +++ ++++  TV+++TG   R     G        +      D P  
Sbjct: 286 AKRVEKKDLVEVELENGAVLKSKTVIISTGARWRNINVPGEAEFKNKGVAYCPHCDGPLF 345

Query: 181 S 181
           +
Sbjct: 346 A 346


>gi|218281477|ref|ZP_03487920.1| hypothetical protein EUBIFOR_00485 [Eubacterium biforme DSM 3989]
 gi|218217399|gb|EEC90937.1| hypothetical protein EUBIFOR_00485 [Eubacterium biforme DSM 3989]
          Length = 665

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G  T LI  K   +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCMTFLIE-KEDHLGGLS 421


>gi|83309632|ref|YP_419896.1| NAD(P)H-nitrite reductase [Magnetospirillum magneticum AMB-1]
 gi|82944473|dbj|BAE49337.1| NAD(P)H-nitrite reductase [Magnetospirillum magneticum AMB-1]
          Length = 819

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 32/199 (16%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL-DG 67
           +VIGGG  G EAA    + G   AL          +   P +       + R++D    G
Sbjct: 152 VVIGGGLLGLEAAWGLKRRGMPVAL----------VHLMPTL-------MERQLDVEAGG 194

Query: 68  LMGRVADAAGIQF-------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           L+ +     G+ F        ++  + G A +G +    RE+    +   I  + N+D+ 
Sbjct: 195 LLQKDLTERGLHFFTSGQTEEIMGAETGRA-QGVKLTDGREIPADLVVVAIGIRPNVDLA 253

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL-----KIPAGRMG 175
           +      N    +   +   D ++      V   G     V  I +         AGR  
Sbjct: 254 KAAGLDINRGIEVGDDMATSDPAIYSVGECVEHRGQIFGLVAPIWEQAKVCASRLAGRDD 313

Query: 176 DS-PSNSLFNSFMKFDFDT 193
               +  L         D 
Sbjct: 314 AHYETPPLSTRLKITGIDV 332


>gi|23099568|ref|NP_693034.1| succinate dehydrogenase flavoprotein subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777798|dbj|BAC14069.1| succinate dehydrogenase flavoprotein subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 583

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 69/232 (29%), Gaps = 46/232 (19%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGK 55
           M NR   V V+GGG AG  A   AA+ G    L +          C     N A+   G+
Sbjct: 1   MSNRK--VAVVGGGLAGLMATIKAAEAGVKVDLFSIVPVKRSHSVCAQGGINGAVNTKGE 58

Query: 56  GH---LVREIDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-- 103
           G    L  +     G        +  + DAA     + +       R P    D   +  
Sbjct: 59  GDSPWLHFDDTVYGGDFLANQPQVKAMCDAAPGIIHMFDRMGVMFNRTPEGLLDFRRFGG 118

Query: 104 ----RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTGTFL 158
               R A       Q+ L  +  +V      +  +  +V +           V+      
Sbjct: 119 TQMHRTAYAGATTGQQLLYALDEQV-----RRYEVEGLVTKFEGWEFL--EAVIDEQGIG 171

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           RG++                 +   +    F  D     TG P  + GK+  
Sbjct: 172 RGIV---------------AQDIKTHEIKAFRSDATIFATGGPGIIFGKSTN 208


>gi|310817193|ref|YP_003965157.1| protein VisC [Ketogulonicigenium vulgare Y25]
 gi|308755928|gb|ADO43857.1| protein VisC [Ketogulonicigenium vulgare Y25]
          Length = 406

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 34/241 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------THKTSTIGSMSCNPAIG--- 51
           M N   DV++IGGG  G   A    + G    +I           T    S   + G   
Sbjct: 1   MENMRADVLIIGGGLNGPALALALTRAGQRAVVIDALPVDLRSADTFDGRSYALSAGTVR 60

Query: 52  --------GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
                          +R+I   DG  G       + F   N  +G      +   DR L 
Sbjct: 61  MLQRLGAWPAAHATAIRQIKVTDGRAGEGPAPFMLHF---NAAEGDNGPMGQMIEDRYLR 117

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT------- 156
           R  +     +     +   +V   N      +S+ + D  M     +V   G        
Sbjct: 118 RALLSAIDANPRVTHIAPAKVVAQNV-DARGASVTLDDGRMFHGKLLVGADGKSSGTAER 176

Query: 157 --FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
               R  +   ++ I      + P + + + F         L        +  +I+W + 
Sbjct: 177 AGLTRSPLPYHQMAITCAIAHERPHDGIAHQFFMPGGPLAILPLTE----NRSSIVWSED 232

Query: 215 E 215
           E
Sbjct: 233 E 233


>gi|284030045|ref|YP_003379976.1| amine oxidase [Kribbella flavida DSM 17836]
 gi|283809338|gb|ADB31177.1| amine oxidase [Kribbella flavida DSM 17836]
          Length = 517

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   YDV+++GGGH G  AA   A  G ST ++  +  T G+        G+
Sbjct: 1  MKDFYDVVIVGGGHNGLVAAGYLAGAGLSTLVLEQQPHTGGAAVSEQVFPGV 52


>gi|224026797|ref|ZP_03645163.1| hypothetical protein BACCOPRO_03554 [Bacteroides coprophilus DSM
           18228]
 gi|224020033|gb|EEF78031.1| hypothetical protein BACCOPRO_03554 [Bacteroides coprophilus DSM
           18228]
          Length = 338

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT--------------HKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG    ++                          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKNVRDRKADLARISREHKVDTESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGSVDKILNVFCQHGASTSILIDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E N ++ I        R   V+L TG   R V 
Sbjct: 199 NMRNTILECGGEVHFQTRMDALLIENNKVAGIETNTGKTFRGP-VILATGHSARDVY 254


>gi|254486607|ref|ZP_05099812.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
 gi|214043476|gb|EEB84114.1| sarcosine oxidase, alpha subunit family [Roseobacter sp. GAI101]
          Length = 977

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           DV+VIG G AG  AA  AA+ GA   L
Sbjct: 167 DVLVIGAGPAGLMAALTAARGGADVIL 193


>gi|108763795|ref|YP_628559.1| mercuric reductase, truncated [Myxococcus xanthus DK 1622]
 gi|108467675|gb|ABF92860.1| mercuric reductase, truncated [Myxococcus xanthus DK 1622]
          Length = 463

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAV-AAKLGASTALITHKT 38
          +  ++DV+VIG G AG E A   AA+ G S AL+ H+ 
Sbjct: 1  MAEAFDVVVIGAGPAG-EVAGARAAEAGLSVALVEHEL 37


>gi|308174541|ref|YP_003921246.1| succinate dehydrogenase flavoprotein subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607405|emb|CBI43776.1| succinate dehydrogenase (flavoprotein subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554463|gb|AEB24955.1| succinate dehydrogenase flavoprotein subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328912867|gb|AEB64463.1| succinate dehydrogenase (flavoprotein subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 586

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 75/248 (30%), Gaps = 31/248 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGTAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPFEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D    R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDERTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIVFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFS 227
           D++L   S
Sbjct: 243 DDKLRLMS 250


>gi|293376186|ref|ZP_06622431.1| thioredoxin-disulfide reductase [Turicibacter sanguinis PC909]
 gi|292645173|gb|EFF63238.1| thioredoxin-disulfide reductase [Turicibacter sanguinis PC909]
          Length = 309

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 47/174 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV +IG G AG  AA  AA+   S  +I                          E
Sbjct: 1   MEKVYDVAIIGAGPAGMTAAIYAARASLSVVMI--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL--SQENLDV 119
             A  G M          F + N      + GP        +  A   E      EN+ +
Sbjct: 35  RGAPGGQMV-------NTFEIENYTGFEKISGPDLSMKMFEHSQAAGAEYAYGYVENVTI 87

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            +      +   + +              T+++ TGT  R ++++   +  +GR
Sbjct: 88  AEDGTKVIDCGDHKV-----------YAKTIIVATGTKHR-LLNVPGEQQLSGR 129


>gi|294626985|ref|ZP_06705575.1| signal peptide protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598647|gb|EFF42794.1| signal peptide protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 463

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG-----GLGKGHLV 59
           + V+GG  AG  +A   A+ GA   LI       + +   +C  ++      G+      
Sbjct: 6   IAVLGGSIAGLTSALAFARSGARVTLIERDAVDAARVAETACEASVSDGWRKGVPHARHT 65

Query: 60  REIDALDGLMGRVA----DAAGIQFRVLNVKKGPAVRGPRTQA---DRELYRLAMQR--- 109
             + AL     R       +A I    + +  G  ++G        D +L+ L+++R   
Sbjct: 66  HALAALGRRTLRERAPDVWSALIAAGAIEMPFGAQLQGLAATPRCDDPDLFGLSVRRAFV 125

Query: 110 ------EILSQENLDVI-QGEVAGFNTEKN---IISSIVMQDNSMIRCSTVVLTTG 155
                  +L + N+ V+ Q  V+G   E     ++  +   +   +R    +   G
Sbjct: 126 ETVLRPIVLVEPNVTVLAQTAVSGLLVEGEGAAMVHGVQTANG-EVRADLTIDALG 180


>gi|293393439|ref|ZP_06637750.1| FAD-dependent oxidoreductase [Serratia odorifera DSM 4582]
 gi|291424040|gb|EFE97258.1| FAD-dependent oxidoreductase [Serratia odorifera DSM 4582]
          Length = 400

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DV+VIG G AG   AA A +LG    L+
Sbjct: 2  EQFDVVVIGAGAAGMFCAAQAGQLGCRVLLL 32


>gi|255658333|ref|ZP_05403742.1| thioredoxin-disulfide reductase [Mitsuokella multacida DSM 20544]
 gi|260849657|gb|EEX69664.1| thioredoxin-disulfide reductase [Mitsuokella multacida DSM 20544]
          Length = 549

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIVIGGG AG  AA   A+      +I
Sbjct: 14 YDVIVIGGGPAGLTAAIYLARACYRVLVI 42


>gi|156937353|ref|YP_001435149.1| ribulose-1,5-biphosphate synthetase [Ignicoccus hospitalis
          KIN4/I]
 gi|156566337|gb|ABU81742.1| thiazole biosynthesis enzyme [Ignicoccus hospitalis KIN4/I]
          Length = 265

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S DVIV+G G AG  AA   AK G  T ++
Sbjct: 24 QSSDVIVVGAGPAGLTAAYYLAKEGFKTLVL 54


>gi|154686979|ref|YP_001422140.1| succinate dehydrogenase flavoprotein subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154352830|gb|ABS74909.1| SdhA [Bacillus amyloliquefaciens FZB42]
          Length = 586

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 75/248 (30%), Gaps = 31/248 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G +  L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGTAVKLFSIVPVKRSHSVCAQGGINGAVNTKGEGDSPFEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                  Q+ L      V + EVAG  T  E       V+ D    R       T   + 
Sbjct: 126 YAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDERTCRGIVAQNLTNMQIE 185

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                  +    G       +   NS +        +        +G+ I    T     
Sbjct: 186 SFRSDAVIMATGGPGIVFGKS--TNSMINTGSAASIVYQQGAYYANGEFIQIHPTAI-PG 242

Query: 220 DERLIPFS 227
           D++L   S
Sbjct: 243 DDKLRLMS 250


>gi|288560697|ref|YP_003424183.1| geranylgeranyl reductase family protein [Methanobrevibacter
           ruminantium M1]
 gi|288543407|gb|ADC47291.1| geranylgeranyl reductase family protein [Methanobrevibacter
           ruminantium M1]
          Length = 432

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGLG 54
           ++  YDV ++G G  G   A   A+ G    LI  K      + C         ++  + 
Sbjct: 1   MSFDYDVAIVGAGPIGSSLAYELAQNGLKVCLIDKKKRIGLPLQCAGIVNKRISSLCDIP 60

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           K  ++ E  A    +      +      ++ K+  A    R   D+ L+  A       +
Sbjct: 61  KELILNE--AKGAFI-----HSKNHSLTVSKKESQAYVLDRVAFDQYLFNRA-------R 106

Query: 115 ENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           E+LD  +  +V   +TE  I+      +   IR   +V   G  
Sbjct: 107 EHLDTYLSSKVVDIDTELGIVQFKFDCEIKTIRSKIIVGADGPL 150


>gi|164686413|ref|ZP_02210443.1| hypothetical protein CLOBAR_02851 [Clostridium bartlettii DSM
           16795]
 gi|164602015|gb|EDQ95480.1| hypothetical protein CLOBAR_02851 [Clostridium bartlettii DSM
           16795]
          Length = 419

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 133/406 (32%), Gaps = 74/406 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V++IG G +G  AA VA+  G    +                I G G+ ++         
Sbjct: 14  VVIIGAGASGMLAAKVASDRGYKVIV----LEKQKRCGQKLLITGKGRCNITNNCEIEEL 69

Query: 61  -EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----------RLAMQ 108
            E    +G     A       +V+++       G  T+ +R                A++
Sbjct: 70  IENVPTNGKFLYSAFYTFTNDQVIDM---FNDLGVETKTERGKRVFPVSDKAVDVVRALE 126

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKL 167
           +++ S +N++V+    V     +   I  +++ D   I C +V++ TG            
Sbjct: 127 KQMRSNKNVEVLLNSKVDKIEAQDGKIKKVILSDKREIECDSVIVATGGVSYPRTGSSGD 186

Query: 168 KIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW--DKTEKQFADERLIP 225
                R           S +  +     +       L   +I     K +K + D   + 
Sbjct: 187 GYKFARNLGHTIIKPKASLIGLEVMEDYVTDLAKLSLRNVSINVYNSKNKKIYDDFGEME 246

Query: 226 FSFMT-DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR 284
           F+    D    +   C +   + E ++I+++                       EDK+ +
Sbjct: 247 FTKYGLDGPIIKSASCRMGDLSKENYKIVLD-----------------LKPALDEDKLDK 289

Query: 285 FGERNGHQIFLEP--EGLNTDVVYPNGISTALP--------------EEIQHQFIRTIPG 328
             +++  Q +     E    D++    I T +               +E +   +  I  
Sbjct: 290 RVQKDF-QKYANKNFENSLNDLLPKQLIPTIVKLSKIDAYIKVNQISKEERKNLVHLIKN 348

Query: 329 LE-KVNIIRPGYAIEYDYINPKELF------PTLETKKISGLFLAG 367
           +   V   RP   IE   I    +        T+E+K +SGL+ AG
Sbjct: 349 ITFTVKNYRP---IEEAIITSGGVKTSEINSSTMESKLVSGLYFAG 391


>gi|54024410|ref|YP_118652.1| putative oxidoreductase/HEAT repeat-containing protein [Nocardia
          farcinica IFM 10152]
 gi|54015918|dbj|BAD57288.1| putative oxidoreductase [Nocardia farcinica IFM 10152]
          Length = 893

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA+  L+
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLL 42


>gi|332701255|ref|ZP_08421343.1| Dihydrolipoyl dehydrogenase [Desulfovibrio africanus str. Walvis
          Bay]
 gi|332551404|gb|EGJ48448.1| Dihydrolipoyl dehydrogenase [Desulfovibrio africanus str. Walvis
          Bay]
          Length = 488

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YD+ VIGGG AG   AA AA+LGA T L+
Sbjct: 1  MADYDYDIGVIGGGSAGLTVAAGAAQLGAKTLLV 34


>gi|329926701|ref|ZP_08281111.1| monoamine oxidase [Paenibacillus sp. HGF5]
 gi|328939041|gb|EGG35407.1| monoamine oxidase [Paenibacillus sp. HGF5]
          Length = 432

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV VIGGG AG  AA  AA+ G  T L+
Sbjct: 3  QYDVAVIGGGVAGLTAAIYAARAGKQTILV 32


>gi|309803884|ref|ZP_07697969.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           11V1-d]
 gi|308164118|gb|EFO66380.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           11V1-d]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I++ YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 3   IDKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 39

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 40  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 81

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 82  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 139

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 140 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 169


>gi|297837617|ref|XP_002886690.1| hypothetical protein ARALYDRAFT_475389 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332531|gb|EFH62949.1| hypothetical protein ARALYDRAFT_475389 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 530

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 8/139 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVIV+G G AG   A    K      +I         I      P     +  LG    V
Sbjct: 61  DVIVVGAGVAGSALAYTLGKDKRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGIEDCV 120

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   + G      G + R+    +               +   M+ +  S  N+ +
Sbjct: 121 EEIDAQ-RVYGYALFKDGKRIRLAYPLEKFHEDVSGRSFHNGRFIQRMREKAASLPNVQL 179

Query: 120 IQGEVAGFNTEKNIISSIV 138
            QG V     E   I  + 
Sbjct: 180 EQGTVVSLLEENGTIKGVR 198


>gi|294507610|ref|YP_003571668.1| protein fixC [Salinibacter ruber M8]
 gi|294343938|emb|CBH24716.1| Protein fixC [Salinibacter ruber M8]
          Length = 385

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD +VIGGG +GC  A   A+ G    L    T
Sbjct: 3  YDALVIGGGLSGCSTALQLAREGHDVLLAEQST 35


>gi|293604872|ref|ZP_06687269.1| FAD dependent oxidoreductase [Achromobacter piechaudii ATCC 43553]
 gi|292816700|gb|EFF75784.1| FAD dependent oxidoreductase [Achromobacter piechaudii ATCC 43553]
          Length = 401

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 74/232 (31%), Gaps = 73/232 (31%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++ +SYDVIVIG G  G   A   A+LGA   L+    +TIG+ + + + G L   + VR
Sbjct: 5   LVVKSYDVIVIGAGVIGSSVAFHLAELGAKNVLV-LDRATIGAGTTSQSSGILRTHYSVR 63

Query: 61  E-----IDALD---------------------GLMGRVAD---------------AAGIQ 79
           E       + +                     G +   AD                 GI 
Sbjct: 64  ENVELAQRSWNVFNNFASYVGDDEASCGLVKCGYLISAADNDKLAPLRSALEQQREQGIA 123

Query: 80  FRVLNVKKG-------------------PAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             +LN  +                     A             R A +R +  +EN+DV 
Sbjct: 124 LELLNAAQARELLPIASFEDAALIGFEPEAGFADAYLVATSFARGARRRGVTIRENVDVR 183

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           Q        +   +  +   D      S +V++T       I   +L    G
Sbjct: 184 Q-----LLVQDGRVVGVSTSDGD--FASPLVISTQN-----IWTSELAGWTG 223


>gi|223986831|ref|ZP_03636811.1| hypothetical protein HOLDEFILI_04134 [Holdemania filiformis DSM
           12042]
 gi|223961197|gb|EEF65729.1| hypothetical protein HOLDEFILI_04134 [Holdemania filiformis DSM
           12042]
          Length = 626

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+VIGGG AG +AA  A + G    L+   +S  G++
Sbjct: 370 VVVIGGGPAGMKAALTADRRGHQVTLLEQNSSLGGAL 406


>gi|221639806|ref|YP_002526068.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides KD131]
 gi|221160587|gb|ACM01567.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides KD131]
          Length = 433

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG+ G   A   A+ G S  L+       G+   N    G G+     E++A+ 
Sbjct: 38 DVCVVGGGYTGLSTALHLAERGYSVVLLEAHRMGFGASGRNGGQAGSGQRLEQEELEAMV 97

Query: 67 GL 68
          GL
Sbjct: 98 GL 99


>gi|254443870|ref|ZP_05057346.1| hypothetical protein VDG1235_2109 [Verrucomicrobiae bacterium
          DG1235]
 gi|198258178|gb|EDY82486.1| hypothetical protein VDG1235_2109 [Verrucomicrobiae bacterium
          DG1235]
          Length = 494

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++  YDV+VIG G  G  +A V AK G    L+ H 
Sbjct: 9  VDEEYDVVVIGSGLGGLTSANVLAKCGHKVLLLEHH 44


>gi|83815648|ref|YP_445717.1| FAD dependent oxidoreductase, putative [Salinibacter ruber DSM
          13855]
 gi|83757042|gb|ABC45155.1| FAD dependent oxidoreductase, putative [Salinibacter ruber DSM
          13855]
          Length = 385

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD +VIGGG +GC  A   A+ G    L    T
Sbjct: 3  YDALVIGGGLSGCSTALQLAREGHDVLLAEQST 35


>gi|89069197|ref|ZP_01156564.1| hypothetical protein OG2516_17575 [Oceanicola granulosus HTCC2516]
 gi|89045195|gb|EAR51262.1| hypothetical protein OG2516_17575 [Oceanicola granulosus HTCC2516]
          Length = 428

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGHLVRE 61
           D+ ++GGG  GC AA  AA+ GA   L+   T   G    +  +   G     +    R 
Sbjct: 30  DLAIVGGGITGCVAALEAARRGAKVTLLEADTVAHGGSGRSVGLVNAGLWLPPEAVTARL 89

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            +A    +         Q   L  ++G +    R       +  A  RE+  + 
Sbjct: 90  GEAAGLRLLSCLAEGPSQVFELISREGISCEATRAGTLHLAHSAAGLRELRERH 143


>gi|310794463|gb|EFQ29924.1| myb-like DNA-binding domain-containing protein [Glomerella
            graminicola M1.001]
          Length = 2384

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 45/131 (34%), Gaps = 21/131 (16%)

Query: 459  RRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNL 518
             RQ+   + I+     R  ++   +  + +    I  +Q  + +   + +       Q L
Sbjct: 1741 ERQQIERQQIERQQIERQQIERQQIERQQIERQQIERQQIERQQIERQQMERQQIERQQL 1800

Query: 519  FSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSN 578
                 + ++      ++L+ +        RQ +E ++++ ++                  
Sbjct: 1801 ERQAIERQQIE---RQQLERQQMERQQAERQQMERQQMERQQM----------------- 1840

Query: 579  ELKEKLSILKP 589
              ++K+   +P
Sbjct: 1841 -ERQKMEAQQP 1850



 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 458  ERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQN 517
            +R+Q    + ++     R  ++   L  + L    I  +Q  + +   + +       Q 
Sbjct: 1705 DRQQAERQQQMERQAIERQQIERQRLEQQQLERQQIERQQIERQQIERQQIERQQIERQQ 1764

Query: 518  LFSICPDARKFSSLVIE--RLQIESSYAAYTGRQMIEAKEIKFE 559
            +     + ++     IE  +++ +        RQ +E + I+ +
Sbjct: 1765 IERQQIERQQIERQQIERQQIERQQMERQQIERQQLERQAIERQ 1808


>gi|218885328|ref|YP_002434649.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756282|gb|ACL07181.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 473

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-------GSMSCNPAIGGLGKGHL 58
          YD+I++GGG  G  AA  AA  G S AL       +       G +     +G      L
Sbjct: 7  YDMIILGGGPGGSRAAFDAAARGLSVAL--VDRDGLGGTCLNRGCIPTKLLLGATAALPL 64

Query: 59 VREIDALDGLMGRVA-DAAGIQFRVLNVKKG 88
          +     L G  G +A D   +Q R     KG
Sbjct: 65 LETQKKLKGADGHIAFDLPALQQRKDRYVKG 95


>gi|121609695|ref|YP_997502.1| BFD/(2Fe-2S)-binding domain-containing protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121554335|gb|ABM58484.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 493

 Score = 44.6 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          +D+I++G G AG  AA  AA+ G +  ++  +    G +   P
Sbjct: 18 FDLIIVGAGPAGLSAALTAARHGLAVVVVDEQHDAGGQIFRQP 60


>gi|317495719|ref|ZP_07954084.1| dihydrolipoyl dehydrogenase [Gemella moribillum M424]
 gi|316914172|gb|EFV35653.1| dihydrolipoyl dehydrogenase [Gemella moribillum M424]
          Length = 582

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDV VIGGG AG  AA  AA+LG   AL+
Sbjct: 123 EYDVAVIGGGPAGYVAAIKAAQLGGKVALV 152


>gi|92112836|ref|YP_572764.1| hypothetical protein Csal_0704 [Chromohalobacter salexigens DSM
           3043]
 gi|122420634|sp|Q1QZP3|MNMC_CHRSD RecName: Full=tRNA 5-methylaminomethyl-2-thiouridine biosynthesis
           bifunctional protein mnmC; Short=tRNA mnm(5)s(2)U
           biosynthesis bifunctional protein; Includes: RecName:
           Full=tRNA (mnm(5)s(2)U34)-methyltransferase; Includes:
           RecName: Full=FAD-dependent cmnm(5)s(2)U34
           oxidoreductase
 gi|91795926|gb|ABE58065.1| protein of unknown function DUF752 [Chromohalobacter salexigens DSM
           3043]
          Length = 699

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIG G AG   AA  A+ G +  L+              A G    G+          
Sbjct: 272 VVVIGAGLAGTSVAAALARRGVAVTLLE-----------RDAPGAGASGN------RQGA 314

Query: 68  LMGRVADAAGIQFRV 82
           L  ++A     Q RV
Sbjct: 315 LYVKLAAETNPQSRV 329


>gi|45580860|emb|CAG15020.1| halogenase [Actinoplanes teichomyceticus]
          Length = 491

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 59/185 (31%), Gaps = 38/185 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+V GGG AG   A + A  G    L+     T         IG       V 
Sbjct: 1   MPVEEFDVVVAGGGPAGSTVATLVAMQGHRVLLLE--KETFPRYQ----IGESLLPSTVH 54

Query: 61  EIDALDGLMGRVAD-----AAGIQFRV----------------LNVKKGPAVRGPRTQAD 99
            +  + G+   +A        G  FR                 +N     A +  R + D
Sbjct: 55  GVCRMLGVSDELAAAGFPVKRGGTFRWGARPEPWTFSFAVSPLMNGPTSFAYQVERARFD 114

Query: 100 RELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDNS--MIRCSTVVLTT 154
             L R A ++       +DV +G  V G       I+ +     D     +    VV  +
Sbjct: 115 EILLRNAQRK------GVDVREGCSVTGVIEGDERITGVRYTDPDGGEHEVSARFVVDAS 168

Query: 155 GTFLR 159
           G   R
Sbjct: 169 GNKSR 173


>gi|40713162|emb|CAE53362.1| halogenase [Actinoplanes teichomyceticus]
          Length = 506

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 59/185 (31%), Gaps = 38/185 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DV+V GGG AG   A + A  G    L+     T         IG       V 
Sbjct: 16  MPVEEFDVVVAGGGPAGSTVATLVAMQGHRVLLLE--KETFPRYQ----IGESLLPSTVH 69

Query: 61  EIDALDGLMGRVAD-----AAGIQFRV----------------LNVKKGPAVRGPRTQAD 99
            +  + G+   +A        G  FR                 +N     A +  R + D
Sbjct: 70  GVCRMLGVSDELAAAGFPVKRGGTFRWGARPEPWTFSFAVSPLMNGPTSFAYQVERARFD 129

Query: 100 RELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDNS--MIRCSTVVLTT 154
             L R A ++       +DV +G  V G       I+ +     D     +    VV  +
Sbjct: 130 EILLRNAQRK------GVDVREGCSVTGVIEGDERITGVRYTDPDGGEHEVSARFVVDAS 183

Query: 155 GTFLR 159
           G   R
Sbjct: 184 GNKSR 188


>gi|288553646|ref|YP_003425581.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          pseudofirmus OF4]
 gi|288544806|gb|ADC48689.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          pseudofirmus OF4]
          Length = 589

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG  AA   A+ G    L +          C    G  G  +   E D
Sbjct: 6  VIVVGGGLAGLMAAIKVAEKGVPVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|271499367|ref|YP_003332392.1| electron-transferring-flavoprotein dehydrogenase [Dickeya
          dadantii Ech586]
 gi|270342922|gb|ACZ75687.1| Electron-transferring-flavoprotein dehydrogenase [Dickeya
          dadantii Ech586]
          Length = 429

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D IV+G G AGC A  V AK G    ++        +       GG    H + 
Sbjct: 1  MSEEKFDAIVVGAGVAGCVAGYVMAKAGLDVLVV----ERGNTAGSKNMTGGRLYAHSLE 56

Query: 61 EI 62
          +I
Sbjct: 57 KI 58


>gi|242238840|ref|YP_002987021.1| hypothetical protein Dd703_1397 [Dickeya dadantii Ech703]
 gi|242130897|gb|ACS85199.1| Electron-transferring-flavoprotein dehydrogenase [Dickeya
          dadantii Ech703]
          Length = 429

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D IV+G G AGC A  V AK G    ++        +       GG    H + 
Sbjct: 1  MSEEKFDAIVVGAGVAGCVAGYVMAKAGLDVLVV----ERGNTAGSKNMTGGRLYAHSLE 56

Query: 61 EI 62
          +I
Sbjct: 57 KI 58


>gi|257065339|ref|YP_003145011.1| NADH:flavin oxidoreductase [Slackia heliotrinireducens DSM 20476]
 gi|256792992|gb|ACV23662.1| NADH:flavin oxidoreductase [Slackia heliotrinireducens DSM 20476]
          Length = 739

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V+V+GGG AG EAA +AA  G S +L        G +    A   L KG 
Sbjct: 486 VMVVGGGPAGMEAARIAALRGHSVSLY----EKSGQLGGLLAFASLVKGP 531


>gi|183982817|ref|YP_001851108.1| dehydrogenase [Mycobacterium marinum M]
 gi|183176143|gb|ACC41253.1| dehydrogenase [Mycobacterium marinum M]
          Length = 526

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           YD IV+G GH G  AAAV  + G  T  +   T T G  +    I G
Sbjct: 3  DYDAIVVGAGHNGLTAAAVLQRAGLRTLCMEANTYTGGMAATVELIDG 50


>gi|192290865|ref|YP_001991470.1| HI0933 family protein [Rhodopseudomonas palustris TIE-1]
 gi|192284614|gb|ACF00995.1| HI0933 family protein [Rhodopseudomonas palustris TIE-1]
          Length = 411

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D  VIG G AG  AA   A+ G    +       +G+ +    + G G  +L       D
Sbjct: 8  DAAVIGAGPAGLMAAEQLARGGLRVTVF----DGMGAPARKFLLAGRGGLNLTHSEAKPD 63

Query: 67 GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
               ++     Q R+    +    R  R  AD
Sbjct: 64 ----FLSRYGAAQVRLAPAIEAFGPRQLRAWAD 92


>gi|145220998|ref|YP_001131676.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          gilvum PYR-GCK]
 gi|315442031|ref|YP_004074910.1| succinate dehydrogenase subunit A [Mycobacterium sp. Spyr1]
 gi|145213484|gb|ABP42888.1| succinate dehydrogenase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260334|gb|ADT97075.1| succinate dehydrogenase subunit A [Mycobacterium sp. Spyr1]
          Length = 644

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            YDV+VIG G AG  A   A + G   A++T      G       +   G    +R ++
Sbjct: 11 HEYDVVVIGAGGAGLRAVIEARERGLRVAVVTKSL--FGKAHT--VMAEGGCAAAMRNVN 66

Query: 64 ALDGLMGRVAD 74
            D       D
Sbjct: 67 TKDSWQVHFGD 77


>gi|332184645|gb|AEE26899.1| NAD(FAD)-utilizing dehydrogenase [Francisella cf. novicida 3523]
          Length = 396

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          N+ YDV++IG G AG   A  AAK    T +          +     + G G+ +
Sbjct: 5  NKYYDVVIIGAGAAGLMCAIEAAKRERKTLV----LDHANKIGKKILMSGGGRCN 55


>gi|313901048|ref|ZP_07834536.1| putative NADH oxidase [Clostridium sp. HGF2]
 gi|312954006|gb|EFR35686.1| putative NADH oxidase [Clostridium sp. HGF2]
          Length = 664

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           + +  +V+VIGGG AG EAA  AA++G +T LI  K   +G +S
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLIE-KEDHLGGLS 421


>gi|288803765|ref|ZP_06409193.1| alkyl hydroperoxide reductase, F subunit [Prevotella melaninogenica
           D18]
 gi|288333752|gb|EFC72199.1| alkyl hydroperoxide reductase, F subunit [Prevotella melaninogenica
           D18]
          Length = 517

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R YDVIV+GGG AG  +A  +A+ G   A++ 
Sbjct: 211 REYDVIVLGGGPAGASSAIYSARKGLRVAIVA 242


>gi|302345934|ref|YP_003814287.1| alkyl hydroperoxide reductase, F subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149680|gb|ADK95942.1| alkyl hydroperoxide reductase, F subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 517

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R YDVIV+GGG AG  +A  +A+ G   A++ 
Sbjct: 211 REYDVIVLGGGPAGASSAIYSARKGLRVAIVA 242


>gi|307295107|ref|ZP_07574949.1| succinate dehydrogenase, flavoprotein subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306879581|gb|EFN10799.1| succinate dehydrogenase, flavoprotein subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 609

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 60/227 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD +V+G G +G  A   +A+ G  TA IT     ++ T+ +      ++G    
Sbjct: 7   IIDHTYDTVVVGAGGSGLRATMGSAEAGLKTACITKLFPTRSHTVAAQGGIAASLGNNSP 66

Query: 56  GHLVREI-DALDG-----------LMGRVADAAGIQFR---------------------- 81
            H    + D + G            M R A AA I+                        
Sbjct: 67  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRNDNGTIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-------VAGFNTEK--- 131
           + N+  GP V+     ADR  +  AM   +  Q    +                 E    
Sbjct: 127 MQNMGAGPPVQRTCAAADRTGH--AMLHALYQQ---SLKYDADFYIEYFAIDLIMEDGPN 181

Query: 132 -NIISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                 ++   M+D S+   R   VVL TG + R            G
Sbjct: 182 GKECRGVIAICMEDGSIHRFRSKAVVLATGGYGRAYFSATSAHSCTG 228


>gi|300172963|ref|YP_003772129.1| thioredoxin-disulfide reductase [Leuconostoc gasicomitatum LMG
          18811]
 gi|299887342|emb|CBL91310.1| thioredoxin-disulfide reductase [Leuconostoc gasicomitatum LMG
          18811]
          Length = 317

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDV++IG G AG  AA  A++   S  ++
Sbjct: 4  DKQYDVVIIGAGPAGMTAATYASRANLSVLML 35


>gi|257065194|ref|YP_003144866.1| thioredoxin reductase [Slackia heliotrinireducens DSM 20476]
 gi|256792847|gb|ACV23517.1| thioredoxin reductase [Slackia heliotrinireducens DSM 20476]
          Length = 552

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD +VIGGG AG  AA   ++    T ++      IG             G L    +AL
Sbjct: 8   YDAVVIGGGPAGLTAAIYLSRARYRTLVVE--KDRIGGQITITHEVVNYPGVLATTGEAL 65

Query: 66  DGLMGRVADAAGIQFR---VLNVKKGPAVRGPR-TQADRELYRLAMQREILSQ---ENLD 118
              M + A+  G +F+   V N+   P   G +    D+    +A    +++      L 
Sbjct: 66  TRTMRQQAEGFGAEFKIAEVTNLDMDPNEDGVKIVHTDKGD--IACHAVLMATGASPRLA 123

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             +GE   F  + + ++     D        V++  G F      +   K  +
Sbjct: 124 GFEGE-EDF--QGHGVAYCATCDGEFFTGKEVLVVGGGFAAAEEAVFLTKYAS 173


>gi|39935256|ref|NP_947532.1| hypothetical protein RPA2187 [Rhodopseudomonas palustris CGA009]
 gi|39649108|emb|CAE27628.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 411

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE----- 61
          D  VIG G AG  AA   A+ G    +       +G+ +    + G G  +L        
Sbjct: 8  DAAVIGAGPAGLMAAEQLARGGLRVTVF----DGMGAPARKFLLAGRGGLNLTHSEAKPD 63

Query: 62 -IDALDGLMGRVA 73
           +        R+A
Sbjct: 64 FLSRYGAAQARLA 76


>gi|33866164|ref|NP_897723.1| dihydrolipoamide dehydrogenase [Synechococcus sp. WH 8102]
 gi|33639139|emb|CAE08145.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp. WH
          8102]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G  TA+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLKTAIIE-SRDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 I 62
          +
Sbjct: 66 L 66


>gi|114330544|ref|YP_746766.1| hypothetical protein Neut_0526 [Nitrosomonas eutropha C91]
 gi|114307558|gb|ABI58801.1| HI0933 family protein [Nitrosomonas eutropha C91]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +  S+DVI+IG G AG   A  A K G    LI H 
Sbjct: 1  MAHSFDVIIIGAGAAGLMCAIEAGKRGRKVWLIDHS 36


>gi|58700289|ref|ZP_00374753.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Wolbachia endosymbiont of Drosophila
          ananassae]
 gi|58533192|gb|EAL57727.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Wolbachia endosymbiont of Drosophila
          ananassae]
          Length = 161

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YD+IVIGGG  G + A  AAKLG   A I   
Sbjct: 3  DYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKN 35


>gi|170692975|ref|ZP_02884136.1| FAD dependent oxidoreductase [Burkholderia graminis C4D1M]
 gi|170141973|gb|EDT10140.1| FAD dependent oxidoreductase [Burkholderia graminis C4D1M]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV + GGG  G  AA   AK G   ALI
Sbjct: 6  HYDVAIAGGGLVGSSAALALAKRGLRVALI 35


>gi|330819937|ref|YP_004348799.1| FAD dependent oxidoreductase [Burkholderia gladioli BSR3]
 gi|327371932|gb|AEA63287.1| FAD dependent oxidoreductase [Burkholderia gladioli BSR3]
          Length = 425

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 28/173 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-------CNPAIGGLGKGHLV 59
           DV+V+G G  G  AA   A+ GAS  +      T+G  +       CN            
Sbjct: 27  DVLVVGAGITGSAAALALARKGASVVVCE--AGTVGQAASGRNGGMCNNGFAQDYASLSR 84

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR---ELYRLAMQREILSQEN 116
           R    L   +    DA       L   +  ++     +  +           R + SQ  
Sbjct: 85  RLGTELANRLYLAFDAGVDMVERL--IREESIDCDFARFGKLKLAAKPEHYDRLVRSQAL 142

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTGTFLRGV 161
           L       AG + +  ++S   ++D          ++   +  +  G ++RG+
Sbjct: 143 L------AAGVDPDTRVVSKAELRDEIGSDRYHGGLLLSKSAGMHVGRYVRGL 189


>gi|258591469|emb|CBE67770.1| putative Electron transfer oxidoreductase [NC10 bacterium 'Dutch
           sediment']
          Length = 407

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 52/165 (31%), Gaps = 22/165 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGG----LGKGHLVR 60
           VI++G G AG   A + A+ G    L+   T     I     +P   G    L    LVR
Sbjct: 6   VIIVGAGPAGSVLAGLLARRGIDALLLDKATFPREKICGDYLSPGTVGLLDQLNLLDLVR 65

Query: 61  EIDALDGLMGRVADAAGIQF-----RVLNVKKGP--AVRGPRTQADRELYRLAMQREILS 113
              A   L   +    G  F      +  +  GP  A+  PR   D  L + A       
Sbjct: 66  SAGARRLLGMTIISPDGTTFTAEFPAISRINAGPPFALSIPRAILDSLLLKWARGFGARC 125

Query: 114 QENLDVIQGEVAGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
            E L      V     E   +  +  +        R   VV   G
Sbjct: 126 VEGLR-----VTDLILENGQVCGVTGIGPTGPETYRGRIVVGADG 165


>gi|288928834|ref|ZP_06422680.1| FAD dependent oxidoreductase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329818|gb|EFC68403.1| FAD dependent oxidoreductase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 498

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 39/259 (15%)

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG-TFLRGVIHIGKLKIPAGR---MGDSPS 179
           V       +  + +   D        V+     T +  +++   L  PA R   +    +
Sbjct: 237 VEHITCNNSKATGVTTADGEHFEADLVIAAIHPTLVMHMLNDTNLIRPAFRQRMLNLPNT 296

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF-ADERLIPF--SFMTDKITNR 236
             +F  ++KF       +      L G         +Q+ AD     F    ++D +   
Sbjct: 297 KGVFTVYIKFKPQAMPYR---NHNLYGYAADTPWQCEQYTADNWPCGFLYVHLSDALAAD 353

Query: 237 QIECGITRTNLETHRIIMENIKHSAIY---SGDIKSYGPRYCPSIEDKIVRFGER-NGHQ 292
           +     T     T   IM  +++  +    +  I   G  Y     D+  R  +    H 
Sbjct: 354 EQP-PNTHQQWATCGEIMSYMRYEEVERWANTRIMHRGETYEDFKRDRAERLIDAVERHA 412

Query: 293 IFLEP--EGLNTDVVYPNGISTALPEEIQHQFIR-TIPGLEKVNIIRPGYAIEYDYINPK 349
             L    +   T        ST L  E     ++ ++ G+     +R G A    ++  +
Sbjct: 413 PGLRQAIDCYFT--------STPLTYEQYTSTLQGSMYGV--AKDVRLGSA---CHVPSR 459

Query: 350 ELFPTLETKKISGLFLAGQ 368
                    +I  LF AGQ
Sbjct: 460 --------TRIPNLFFAGQ 470


>gi|221639702|ref|YP_002525964.1| Geranylgeranyl reductase BchP [Rhodobacter sphaeroides KD131]
 gi|221160483|gb|ACM01463.1| Geranylgeranyl reductase BchP [Rhodobacter sphaeroides KD131]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREIDA 64
           YDV V+GGG +G  AA   A+ G S AL        G +  C    GG     L+ + D 
Sbjct: 3   YDVFVVGGGPSGATAADELARAGKSVAL----LDRAGRIKPC----GGAIPPRLIEDFDI 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            D  +      A +          P   G     DRE +   ++R 
Sbjct: 55  PDSQIVARIRTARMISPTGRKVDIPIEGGFVGMVDREHFDEWLRRR 100


>gi|212224754|ref|YP_002307990.1| thioredoxin reductase [Thermococcus onnurineus NA1]
 gi|212009711|gb|ACJ17093.1| thioredoxin reductase [Thermococcus onnurineus NA1]
          Length = 330

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +++DV++IG G AG  AA  AA+ G  T +I+   
Sbjct: 15 KKAWDVLIIGAGPAGFTAAIYAARFGLETLIISKDL 50


>gi|193212390|ref|YP_001998343.1| dihydrolipoamide dehydrogenase [Chlorobaculum parvum NCIB 8327]
 gi|209572605|sp|O50311|DLDH_CHLP8 RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of pyruvate and 2-oxoglutarate dehydrogenases
          complexes
 gi|193085867|gb|ACF11143.1| dihydrolipoamide dehydrogenase [Chlorobaculum parvum NCIB 8327]
          Length = 469

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV VIG G  G EAA  AA+ G    L+
Sbjct: 10 QFDVAVIGSGPGGYEAALHAARHGMKVCLV 39


>gi|117307367|dbj|BAE43553.2| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993066|dbj|BAE43546.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993086|dbj|BAE43556.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993058|dbj|BAE43542.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993000|dbj|BAE43513.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993006|dbj|BAE43516.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993010|dbj|BAE43518.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993014|dbj|BAE43520.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993020|dbj|BAE43523.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993022|dbj|BAE43524.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993032|dbj|BAE43529.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993034|dbj|BAE43530.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993038|dbj|BAE43532.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993042|dbj|BAE43534.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993094|dbj|BAE43560.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993056|dbj|BAE43541.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993090|dbj|BAE43558.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993016|dbj|BAE43521.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993060|dbj|BAE43543.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993012|dbj|BAE43519.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993078|dbj|BAE43552.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993062|dbj|BAE43544.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993082|dbj|BAE43554.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993018|dbj|BAE43522.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993048|dbj|BAE43537.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993068|dbj|BAE43547.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993076|dbj|BAE43551.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993088|dbj|BAE43557.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993024|dbj|BAE43525.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993030|dbj|BAE43528.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993046|dbj|BAE43536.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993052|dbj|BAE43539.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993054|dbj|BAE43540.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993026|dbj|BAE43526.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993040|dbj|BAE43533.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993008|dbj|BAE43517.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993028|dbj|BAE43527.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|73993072|dbj|BAE43549.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603207|dbj|BAD02739.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603221|dbj|BAD02746.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603225|dbj|BAD02748.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603227|dbj|BAD02749.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603239|dbj|BAD02755.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603241|dbj|BAD02756.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603253|dbj|BAD02762.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603257|dbj|BAD02764.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603259|dbj|BAD02765.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603271|dbj|BAD02771.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993002|dbj|BAE43514.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603189|dbj|BAD02730.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603209|dbj|BAD02740.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603219|dbj|BAD02745.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603231|dbj|BAD02751.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603249|dbj|BAD02760.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603251|dbj|BAD02761.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603255|dbj|BAD02763.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603265|dbj|BAD02768.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603277|dbj|BAD02774.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603191|dbj|BAD02731.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603195|dbj|BAD02733.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603197|dbj|BAD02734.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603199|dbj|BAD02735.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603205|dbj|BAD02738.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603211|dbj|BAD02741.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603215|dbj|BAD02743.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603217|dbj|BAD02744.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603229|dbj|BAD02750.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603233|dbj|BAD02752.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603235|dbj|BAD02753.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603243|dbj|BAD02757.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603267|dbj|BAD02769.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993036|dbj|BAE43531.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993044|dbj|BAE43535.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603183|dbj|BAD02727.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603185|dbj|BAD02728.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603223|dbj|BAD02747.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603245|dbj|BAD02758.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603273|dbj|BAD02772.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603275|dbj|BAD02773.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993004|dbj|BAE43515.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|73993050|dbj|BAE43538.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603213|dbj|BAD02742.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603187|dbj|BAD02729.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603193|dbj|BAD02732.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603201|dbj|BAD02736.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603203|dbj|BAD02737.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603247|dbj|BAD02759.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603261|dbj|BAD02766.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|38603237|dbj|BAD02754.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603263|dbj|BAD02767.1| putative lycopene beta cyclase [Cryptomeria japonica]
 gi|38603269|dbj|BAD02770.1| putative lycopene beta cyclase [Cryptomeria japonica]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|34146775|dbj|BAC82352.1| putative lycopene beta cyclase [Taxodium distichum]
 gi|73993064|dbj|BAE43545.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|13473168|ref|NP_104735.1| phytoene dehydrogenase [Mesorhizobium loti MAFF303099]
 gi|14023916|dbj|BAB50521.1| phytoene dehydrogenase [Mesorhizobium loti MAFF303099]
          Length = 521

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHLVRE 61
          S+D IVIGGGH G  AAA  AK G    ++  ++   G+       P        HL+  
Sbjct: 3  SFDAIVIGGGHNGLVAAATLAKAGRKVLVLEAESEVGGAARTEEFAPGFRVSSIAHLLNR 62

Query: 62 ID 63
          + 
Sbjct: 63 LH 64


>gi|2661853|emb|CAB06298.1| dehydrolipoamide dehydrogenase [Prosthecochloris vibrioformis]
          Length = 469

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV VIG G  G EAA  AA+ G    L+
Sbjct: 10 QFDVAVIGSGPGGYEAALHAARHGMKVCLV 39


>gi|84684396|ref|ZP_01012297.1| dihydrolipoamide dehydrogenase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667375|gb|EAQ13844.1| dihydrolipoamide dehydrogenase [Rhodobacterales bacterium HTCC2654]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 26/163 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKL-GASTALITHKT-----STIGSMSCNPAIGGLG 54
           M + + DV VIG G AG  AA  +A+  GA T LI         +T+G M     I    
Sbjct: 1   MADLTCDVAVIGAGTAGI-AAERSARAQGAKTLLIDPDFAGTVCATVGCMPSKLLIAAAH 59

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           + H  R             D A +  RV              +A+R+ +  A +      
Sbjct: 60  RAHDARTAGLFGVSTSVSVDGAAVMARV--------------RAERDAFAAATRAGFDDL 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
            N     G             ++ + D   +  + +V+ TG+ 
Sbjct: 106 PN-----GTCIRARARFTGPGALSLDDGRKVAANAIVIATGSH 143



 Score = 39.5 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           VIG G  G E A   A+LG   A+      TI    C  AI    K  L +++D   G 
Sbjct: 176 VIGAGAIGIELAQAFARLGVRVAVFDQG-DTIAGARC-DAIHDALKAELAKDMDLFLGA 232


>gi|326791000|ref|YP_004308821.1| HI0933 family protein [Clostridium lentocellum DSM 5427]
 gi|326541764|gb|ADZ83623.1| HI0933 family protein [Clostridium lentocellum DSM 5427]
          Length = 433

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 27/181 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------ 60
           +V++IGGG +G  AA VAA+ GA   L       +  +     + G G+ ++        
Sbjct: 23  EVVIIGGGASGLVAAIVAARRGAKVCL----LERLSRVGKKILVTGNGRCNITNTQLKAN 78

Query: 61  ------EIDALDGLMGRVA-DAAGIQFRVLNVK---KGPAVRGPRTQADRELYRLAMQRE 110
                 E+  + G + R   +     F  L +    +G  V     QA   L  L M+ E
Sbjct: 79  CYHTSSEVYPIMGPIERFGYEETKTFFEELGIAFLVEGQKVYPCSEQATSVLDVLRMEAE 138

Query: 111 ILSQENLDVIQGEVAGFNTEK--NIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            L  E L  ++  V     +K    I     +         V++ TG      +      
Sbjct: 139 RLQVEILTDVK--VTDLFYKKDGWQIVG---EQGQTYASKKVIVATGGMANASLGCDGTG 193

Query: 169 I 169
            
Sbjct: 194 Y 194


>gi|332880665|ref|ZP_08448339.1| FAD dependent oxidoreductase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681653|gb|EGJ54576.1| FAD dependent oxidoreductase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 408

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 27/121 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGA-STALITHKTST----------IGSMSCNPAI 50
           + + YDVI+IGGG  GC  A   AK  A    L+                +      PA+
Sbjct: 1   MKQDYDVIIIGGGLLGCATAYQLAKRKAGKVLLLDANEIASQASSRAACLLTRARTKPAL 60

Query: 51  GGLGK---------GHLVR---EIDALDGLMGRVADAAGIQFRVLNVKKG----PAVRGP 94
             + +          HL+    E+     +    +DA+  +   L         P  R  
Sbjct: 61  MEMVQETYDCIDEIEHLLGESLELQQCGSVTISSSDASLKELEALEEAAVRFGIPNERID 120

Query: 95  R 95
           R
Sbjct: 121 R 121


>gi|332188065|ref|ZP_08389796.1| dihydrolipoyl dehydrogenase [Sphingomonas sp. S17]
 gi|332011913|gb|EGI53987.1| dihydrolipoyl dehydrogenase [Sphingomonas sp. S17]
          Length = 477

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 36/242 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
           ++  S+D++VIGGG  G  AA  AA+LG + A I  +   +G    ++ C P+   L   
Sbjct: 8   LMADSFDILVIGGGTGGYPAAIRAAQLGMTVACIE-RRDALGGTCLNVGCIPSKALLHSS 66

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQ--REI 111
            L  E+       G       +       +K   V G     +   ++     ++     
Sbjct: 67  ELFAEVQQGMEEHGIGIGGVAMNVPQFIARKDEVVAGLTKGVEHLFKKNKVEWVKGSARF 126

Query: 112 LSQENLDVIQGEVAGFNTEKNI----ISSIVMQDNSMIRC--------STVVLTTGTFLR 159
            + + L V        N   +        +++   S              ++ +TG    
Sbjct: 127 EAPDRLRV------ELNDGGSRTLTATKGVIIATGSESSSLKNVEVDEKRIITSTGALCL 180

Query: 160 GVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK--TGTPARLDGKTI--IWDKTE 215
             +    + I AG +G      L + + +   +   ++   G    +D +       + E
Sbjct: 181 CEVPRHLVVIGAGYIGLE----LGSVWRRLGSEVTVIEFLDGIVPTMDREIARHFHKELE 236

Query: 216 KQ 217
           +Q
Sbjct: 237 RQ 238


>gi|332716207|ref|YP_004443673.1| oxidoreductase [Agrobacterium sp. H13-3]
 gi|325062892|gb|ADY66582.1| oxidoreductase [Agrobacterium sp. H13-3]
          Length = 424

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV VIGGG  G  AA   AK GA   ++  +    G+   N      G  H      A
Sbjct: 25  HYDVAVIGGGFTGLGAARQLAKAGARVVVLEGQRVGWGASGRNGGHLNNGLAHSYLSAKA 84

Query: 65  LDG-----LMGRVADAAGIQFRVLNVKKG 88
             G      + +  DA+      L  ++G
Sbjct: 85  ELGKERAIALYKALDASIDTLESLIAEEG 113


>gi|256391916|ref|YP_003113480.1| tryptophan halogenase [Catenulispora acidiphila DSM 44928]
 gi|256358142|gb|ACU71639.1| tryptophan halogenase [Catenulispora acidiphila DSM 44928]
          Length = 506

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 33/156 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK------------------TSTIG 42
           + +   +VIV+GGG AG  AAA+ AK G S  L+  +                     IG
Sbjct: 14  VFSEMTEVIVVGGGPAGSTAAALLAKNGVSVTLLEREAFPRYHVGESITYSCRGVLDYIG 73

Query: 43  SMSCNPAIGGLGK-GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           ++    A G   K G L+R        +    D    QF       GP VR    Q DRE
Sbjct: 74  ALEKIEARGYTRKTGVLLR----WGQELDWAIDWTA-QF-------GPDVRS--WQVDRE 119

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
            +   + +         + Q +V     E      +
Sbjct: 120 DFDQVLLQHAAECGAQVLEQAQVKRVVFEDGRAVGV 155


>gi|153816256|ref|ZP_01968924.1| hypothetical protein RUMTOR_02505 [Ruminococcus torques ATCC 27756]
 gi|145846439|gb|EDK23357.1| hypothetical protein RUMTOR_02505 [Ruminococcus torques ATCC 27756]
          Length = 651

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           +V+GGG AG +AA  AA+ G    L+  +    G + C+
Sbjct: 392 VVVGGGPAGMQAALTAARRGHQVILLEREGELGGQLICS 430


>gi|46580639|ref|YP_011447.1| hypothetical protein DVU2234 [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46450058|gb|AAS96707.1| conserved hypothetical protein TIGR00275 [Desulfovibrio vulgaris
          str. Hildenborough]
 gi|311234371|gb|ADP87225.1| HI0933 family protein [Desulfovibrio vulgaris RCH1]
          Length = 389

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  + D+I++G G +G   A  AA  G    L+       G       + G GK +    
Sbjct: 1  MTHNTDIIILGAGASGLMCAMTAATRGHRVTLV----DHGGKPGRKILVAGGGKCNFTNT 56

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
              D  +GR AD         +
Sbjct: 57 EVGPDDYVGRNADFCRSALARFS 79


>gi|77463847|ref|YP_353351.1| geranylgeranyl hydrogenase [Rhodobacter sphaeroides 2.4.1]
 gi|126462682|ref|YP_001043796.1| geranylgeranyl reductase [Rhodobacter sphaeroides ATCC 17029]
 gi|332558721|ref|ZP_08413043.1| geranylgeranyl reductase [Rhodobacter sphaeroides WS8N]
 gi|4490583|emb|CAB38733.1| geranylgeranyl bacteriochlorophyll reductase [Rhodobacter
           sphaeroides]
 gi|6690715|gb|AAF24283.1| BchP [Rhodobacter sphaeroides]
 gi|77388265|gb|ABA79450.1| Geranylgeranyl hydrogenase [Rhodobacter sphaeroides 2.4.1]
 gi|126104346|gb|ABN77024.1| geranylgeranyl reductase [Rhodobacter sphaeroides ATCC 17029]
 gi|332276433|gb|EGJ21748.1| geranylgeranyl reductase [Rhodobacter sphaeroides WS8N]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREIDA 64
           YDV V+GGG +G  AA   A+ G S AL        G +  C    GG     L+ + D 
Sbjct: 3   YDVFVVGGGPSGATAADELARAGKSVAL----LDRAGRIKPC----GGAIPPRLIEDFDI 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            D  +      A +          P   G     DRE +   ++R 
Sbjct: 55  PDSQIVARIRTARMISPTGRKVDIPIEGGFVGMVDREHFDEWLRRR 100


>gi|325923007|ref|ZP_08184711.1| hypothetical protein TIGR00275 [Xanthomonas gardneri ATCC 19865]
 gi|325546515|gb|EGD17665.1| hypothetical protein TIGR00275 [Xanthomonas gardneri ATCC 19865]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1  MSTRYDVLVIGAGAAGLMSAFTAGRRGRQVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62 IDALDGLM 69
                 +
Sbjct: 57 GTTPGNFL 64


>gi|324991993|gb|EGC23915.1| thioredoxin reductase [Streptococcus sanguinis SK405]
          Length = 304

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|239625140|ref|ZP_04668171.1| dihydrolipoyl dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519370|gb|EEQ59236.1| dihydrolipoyl dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 476

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + R YDV++IG G  G  AA  AA+ G S ALI  K   IG    N      G       
Sbjct: 1  MARKYDVVIIGAGPGGYTAAFKAAQFGLSVALIEAK--KIGGTCVN-----RGCIPTKAL 53

Query: 62 IDALDGL-MGRVADAAGI 78
          + A D   M +  DA G+
Sbjct: 54 LHASDMFHMMQNCDAFGV 71


>gi|327401856|ref|YP_004342695.1| thioredoxin reductase [Archaeoglobus veneficus SNP6]
 gi|327317364|gb|AEA47980.1| thioredoxin reductase [Archaeoglobus veneficus SNP6]
          Length = 300

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC---NPAIGGLGKGHLVR 60
           YDV +IG G AG  AA  A + G  T       S +  +      P   G G   L +
Sbjct: 2  EYDVAIIGAGPAGLTAAIYAGRYGLRTVFFESMPSQLAVVPFIENYPGFEGSGYELLEK 60


>gi|256059297|ref|ZP_05449499.1| hypothetical protein Bneo5_02923 [Brucella neotomae 5K33]
 gi|261323252|ref|ZP_05962449.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299232|gb|EEY02729.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 442

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 15/155 (9%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        + +   L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEAHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            E A    E      +V    +      ++L TG 
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGN 151


>gi|288941916|ref|YP_003444156.1| amine oxidase [Allochromatium vinosum DSM 180]
 gi|288897288|gb|ADC63124.1| amine oxidase [Allochromatium vinosum DSM 180]
          Length = 400

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           ++  +D IVIG G +G  AA  +A+ G ST ++      +G        PA+GG      
Sbjct: 1   MSTDFDHIVIGAGISGLGAAHFSARRGLSTLVLEAS-DRVGGCINSQVFPALGGF----- 54

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG-PRTQADRELYRLAMQREILSQENL 117
                      G     +      +    G   +  P+ +   +L++   +R ILS   L
Sbjct: 55  ------WTEAGGHTCFNSYGHMLSILDDLGLTSQVHPKVKVGYKLWKAGKRRSILSA--L 106

Query: 118 DVIQG--EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            + +G   +     E     S+     +++             + VI       PA
Sbjct: 107 HLFEGARSIPKLFKEPKDGRSVRDYYGAVLGRRNYRDLLQHAFQAVICQPADDYPA 162


>gi|228473514|ref|ZP_04058267.1| dihydrolipoyl dehydrogenase [Capnocytophaga gingivalis ATCC
          33624]
 gi|228275121|gb|EEK13924.1| dihydrolipoyl dehydrogenase [Capnocytophaga gingivalis ATCC
          33624]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
          ++YDVIVIG G  G  AA  A++LG  TA++  K +T+G    ++ C P+   L   HL+
Sbjct: 2  KNYDVIVIGAGPGGYVAAIRASQLGKKTAIVE-KYNTLGGTCLNVGCIPSKALLDSTHLL 60

Query: 60 RE 61
           +
Sbjct: 61 ED 62


>gi|119873191|ref|YP_931198.1| thioredoxin-disulfide reductase [Pyrobaculum islandicum DSM 4184]
 gi|119674599|gb|ABL88855.1| Thioredoxin-disulfide reductase [Pyrobaculum islandicum DSM 4184]
          Length = 321

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          ++  YDV+++G G AG  AA   A+    T +I+   
Sbjct: 1  MDVDYDVVIVGAGIAGLSAALYTARQKLKTLVISKDL 37


>gi|91203772|emb|CAJ71425.1| similar to succinate dehydrogenase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 580

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 52/206 (25%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGKGHL 58
           + Y+VIV+GGG AG  AA    +     A+I+     ++ +I +    N  +G   +G  
Sbjct: 8   KRYEVIVVGGGLAGLRAAIEINRHNVKIAIISKVHPLRSHSIAAQGGINAPLGNHFRGIY 67

Query: 59  -VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG------------------------ 93
              E  A D + G  +D    Q  V+ + K  A R                         
Sbjct: 68  DTWEKHAFDTVKG--SDYLADQDAVIRMTKDAADRIYELEHWGCPFSRTAEGRIAQRPFG 125

Query: 94  ----PRT--QADR-------ELYRLAMQREILSQENLDVIQGE--VAGFNTEKNIISSIV 138
               PR    +D+        LY+  +Q +  S+    V+  E  V     E+ +   ++
Sbjct: 126 GAGFPRACYASDKTGHALLHTLYQQIIQLKHASEREEMVMYDEWLVTDLVIEEGVCVGVI 185

Query: 139 MQDNS-----MIRCSTVVLTTGTFLR 159
           + D        ++   V+  TG   R
Sbjct: 186 VMDIISGEIEALQAGAVIFATGGSGR 211


>gi|57997512|emb|CAI46076.1| hypothetical protein [Homo sapiens]
          Length = 574

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMKFDFDTGRL---------------KTGTPARLDGKTIIW 211
                G +  +      N       + G +                 G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPGPVLIYQISSSETRVLVDIRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSMP 389


>gi|332364374|gb|EGJ42148.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK355]
          Length = 391

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDDLFTVRSSDQTWTCQKLIVTTG 163


>gi|332296088|ref|YP_004438011.1| precorrin 3B synthase CobZ [Thermodesulfobium narugense DSM
          14796]
 gi|332179191|gb|AEE14880.1| precorrin 3B synthase CobZ [Thermodesulfobium narugense DSM
          14796]
          Length = 458

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +DVIV+GGG+AG  AA  A + GA   L+    
Sbjct: 2  DFDVIVVGGGNAGLCAAMSAKENGAKVLLLERSP 35


>gi|257051964|ref|YP_003129797.1| geranylgeranyl reductase [Halorhabdus utahensis DSM 12940]
 gi|256690727|gb|ACV11064.1| geranylgeranyl reductase [Halorhabdus utahensis DSM 12940]
          Length = 455

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IGSMSCNPAIGGLG 54
          M    YD +V+G G +GC AAA  A+ G    ++  K+ +  G ++C  A+ G  
Sbjct: 1  MTTAEYDAVVVGAGVSGCYAAATMAEEGLDVVIVERKSESEAGHIACGDALKGAS 55


>gi|209876303|ref|XP_002139594.1| succinate dehydrogenase, flavoprotein subunit [Cryptosporidium
           muris RN66]
 gi|209555200|gb|EEA05245.1| succinate dehydrogenase, flavoprotein subunit, putative
           [Cryptosporidium muris RN66]
          Length = 628

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 68/220 (30%), Gaps = 50/220 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTSTIGSMSCNPAIGGLGK 55
           +I   +D +VIG G +G  AA   ++LG  TA I     T   +       N A+G + +
Sbjct: 30  LITHKFDALVIGAGGSGLRAATGLSELGFKTACISKVFPTRSHTVAAQGGINAALGNMTE 89

Query: 56  -------------GHLVREIDALDGLMGRVADAA---------------------GIQFR 81
                           + + DA+  +     DA                          +
Sbjct: 90  DDWRWHAYDTIKGSDWLGDQDAIQHMCREACDAVIELESFGLPFSRTEKGLIYQRAFGGQ 149

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQ----ENLDVIQGEVAGFNTEKNIISSI 137
            LN  KG         ADR  +  AM   + SQ    +     +  V      +      
Sbjct: 150 SLNYGKGGQAYRCAAAADRTGH--AMLHTLYSQALKHDCTFFAEYFVLDLIMYQGQCCGA 207

Query: 138 V---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +   + D S+     +  V+ TG + R  +         G
Sbjct: 208 IAICLDDGSIHRFYANDTVIATGGYGRVYLSCTAAHTCTG 247


>gi|1806570|emb|CAA71601.1| flavocytochrome c flavin subunit [Wolinella succinogenes]
          Length = 515

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  YDVI++G G AG       A+ G  T +       +G +  N  I G
Sbjct: 42 FDEEYDVIIVGSGFAGIACGIKCAEKGYKTLM----IEKMGRIGGNSVING 88


>gi|34556573|ref|NP_906388.1| flavocytochrome C flavin subunit [Wolinella succinogenes DSM
          1740]
 gi|34482287|emb|CAE09288.1| FLAVOCYTOCHROME C FLAVIN SUBUNIT [Wolinella succinogenes]
          Length = 515

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  YDVI++G G AG       A+ G  T +       +G +  N  I G
Sbjct: 42 FDEEYDVIIVGSGFAGIACGIKCAEKGYKTLM----IEKMGRIGGNSVING 88


>gi|329767521|ref|ZP_08259044.1| hypothetical protein HMPREF0428_00741 [Gemella haemolysans M341]
 gi|328835855|gb|EGF85577.1| hypothetical protein HMPREF0428_00741 [Gemella haemolysans M341]
          Length = 582

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDV VIGGG AG  AA  AA+LG   AL+
Sbjct: 123 EYDVAVIGGGPAGYVAAIKAAQLGGKVALV 152


>gi|324106153|gb|ADY18320.1| 3-ketosteroid dehydrogenase [Rhodococcus rhodochrous]
          Length = 570

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD++V+G G  G  AA  AA+ GA   LI
Sbjct: 1  MTKQEYDIVVVGSGAGGMTAAITAARKGADVVLI 34


>gi|295705831|ref|YP_003598906.1| FAD binding domain-containing protein [Bacillus megaterium DSM 319]
 gi|294803490|gb|ADF40556.1| FAD binding domain protein [Bacillus megaterium DSM 319]
          Length = 409

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N++YDVI+ G   AG   A    K G    L+   T    ++S +          L+RE
Sbjct: 1   MNKTYDVIITGARVAGSTLAIYLGKAGFHVLLVDQATFPKDTLSTHTFFNNTVA--LLRE 58

Query: 62  IDALDGLMGRVADAAGI---QFRVLNVKKG--PAVRGPRT-QADRELYRLAM-QREILSQ 114
           I  +D L+   A        QF      +G  P V G  +    R  Y   +   +  SQ
Sbjct: 59  IGVMDKLLETNAPPVKDIKFQFEDT-AIEGIIPKVEGEESCYCIRRTYLDQILLEQAKSQ 117

Query: 115 ENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCS-TVVLTTGTFLRGVIHIGKLKIP 170
            N+ V++   V       + +  +   D +  +   +  L  G   R  I    +K  
Sbjct: 118 MNVTVLERFRVTDVIHADDTVVGVEGLDGNNEKQEFSARLVVGADGRSSIIRELVKSE 175


>gi|300779946|ref|ZP_07089802.1| dihydrolipoamide dehydrogenase [Corynebacterium genitalium ATCC
          33030]
 gi|300534056|gb|EFK55115.1| dihydrolipoamide dehydrogenase [Corynebacterium genitalium ATCC
          33030]
          Length = 470

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV+VIG G  G  AA  AA+LG   A++
Sbjct: 1  MAKEQYDVVVIGAGPGGYVAAIRAAQLGQKVAVV 34


>gi|160879688|ref|YP_001558656.1| dihydrolipoamide dehydrogenase [Clostridium phytofermentans ISDg]
 gi|160428354|gb|ABX41917.1| dihydrolipoamide dehydrogenase [Clostridium phytofermentans ISDg]
          Length = 470

 Score = 44.2 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           + + YD++VIG G  G  AA  AAKLG  TA+I       G+     C PA   L    L
Sbjct: 1   MEKIYDLLVIGAGPGGYVAAIKAAKLGMKTAVIE-NREVGGTCLNRGCVPAKAMLHAAKL 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            +E+ +     G + +     +  +   K       R   ++ L    ++R         
Sbjct: 60  YQEVLS-GEQFGILVEEVSFDYGKVMSYKNETSESLRLGVEQLLKGNKVER--------- 109

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMI-RCSTVVLTTGT 156
            +QG        +  I     ++   I +   ++L TG+
Sbjct: 110 -LQGIGTLLKDGRVRI---KTKEGEEILQAKNILLATGS 144


>gi|332797910|ref|YP_004459410.1| L-aspartate oxidase [Acidianus hospitalis W1]
 gi|332695645|gb|AEE95112.1| L-aspartate oxidase [Acidianus hospitalis W1]
          Length = 477

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 27/188 (14%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA----- 64
           + G G AG  AA    K G    +IT K +   +      I          EI A     
Sbjct: 4   IFGNGIAGLSAAVSLTKSGYKVTVITKKITGGSTYIAKGGIAAAVGSDDSPEIHAKDTLR 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--------------------RELYR 104
           +   +        +        K     G     D                    R++Y 
Sbjct: 64  VGDGLSDERAVNYVTSEAPKAVKTLEEWGFEFATDLRLEGGHSRRRVLHKTDETGRDIYD 123

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
             M++      N+ +I+ E+    TE N +   + ++   I    +VL TG +     + 
Sbjct: 124 FLMRKAQEL--NIPIIEDELLAIKTENNEVKGFITRNRGEIEADKIVLATGGYAYLWKYT 181

Query: 165 GKLKIPAG 172
                  G
Sbjct: 182 SNQSTNTG 189


>gi|307825481|ref|ZP_07655699.1| dihydrolipoamide dehydrogenase [Methylobacter tundripaludum SV96]
 gi|307733367|gb|EFO04226.1| dihydrolipoamide dehydrogenase [Methylobacter tundripaludum SV96]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S+DVIVIG G AG  +A   A+LG  TA I
Sbjct: 7  KSFDVIVIGAGPAGYSSAIRCAQLGLKTACI 37


>gi|296314773|ref|ZP_06864714.1| dihydrolipoyl dehydrogenase [Neisseria polysaccharea ATCC 43768]
 gi|296838416|gb|EFH22354.1| dihydrolipoyl dehydrogenase [Neisseria polysaccharea ATCC 43768]
          Length = 484

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV+VIG G  G  AA  AA+LG  T  +    +  G+    PA+GG 
Sbjct: 3  QYDVVVIGAGPGGYVAAIRAAQLGFKTVCVDAGVNKAGNA---PALGGT 48


>gi|225568318|ref|ZP_03777343.1| hypothetical protein CLOHYLEM_04393 [Clostridium hylemonae DSM
           15053]
 gi|225162847|gb|EEG75466.1| hypothetical protein CLOHYLEM_04393 [Clostridium hylemonae DSM
           15053]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 42/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ VIG G AG  +A  AA  G  T ++                          E   +
Sbjct: 2   YDICVIGAGPAGISSAVYAASRGLETVVL--------------------------EEKEV 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            GL+G V+      +  +   +  A    R +   E Y             +D+ + +V 
Sbjct: 36  GGLLGGVS--TVTHYSGIVEGETGASFAERLKRQAESY------------GIDIRREKVL 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               E + + +IV       +   V++  GT  R
Sbjct: 82  SAELEGD-VKTIVTDAG-TYKAKAVIIAAGTTPR 113


>gi|254487976|ref|ZP_05101181.1| gamma-glutamylputrescine oxidoreductase [Roseobacter sp. GAI101]
 gi|214044845|gb|EEB85483.1| gamma-glutamylputrescine oxidoreductase [Roseobacter sp. GAI101]
          Length = 434

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G+ G  AA   AK G    L+  +    G+   N   G LG G  V E D   
Sbjct: 38  DVCVVGAGYTGLSAALHLAKAGRRVILLEAQRVGFGASGRNG--GQLGSGQRV-EQD--G 92

Query: 67  GLMGRVADAAGIQFRVLNVKKG 88
                 AD A   +R+    K 
Sbjct: 93  LEKMLGADHAAKLWRMGEEAKA 114


>gi|150401729|ref|YP_001325495.1| geranylgeranyl reductase [Methanococcus aeolicus Nankai-3]
 gi|209572859|sp|A6UWL1|GGR_META3 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|150014432|gb|ABR56883.1| geranylgeranyl reductase [Methanococcus aeolicus Nankai-3]
          Length = 391

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +++  YDVIVIG G  G  A+  ++  GA T LI         + C
Sbjct: 4  LLDSEYDVIVIGAGPGGSMASYHSSINGAKTLLIDKSQEIGTPVRC 49


>gi|330507596|ref|YP_004384024.1| geranylgeranyl reductase [Methanosaeta concilii GP-6]
 gi|328928404|gb|AEB68206.1| geranylgeranyl reductase [Methanosaeta concilii GP-6]
          Length = 374

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D++V+G G AG  AA +AA +G    ++
Sbjct: 2  FDLVVVGAGPAGSTAARIAAGMGLKVLIL 30


>gi|319763350|ref|YP_004127287.1| dihydrolipoamide dehydrogenase [Alicycliphilus denitrificans BC]
 gi|330825584|ref|YP_004388887.1| dihydrolipoamide dehydrogenase [Alicycliphilus denitrificans
          K601]
 gi|317117911|gb|ADV00400.1| dihydrolipoamide dehydrogenase [Alicycliphilus denitrificans BC]
 gi|329310956|gb|AEB85371.1| dihydrolipoamide dehydrogenase [Alicycliphilus denitrificans
          K601]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIVIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVIVIGAGPGGYIAAIRAAQLGMNVACI 33


>gi|222111097|ref|YP_002553361.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY]
 gi|221730541|gb|ACM33361.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIVIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVIVIGAGPGGYIAAIRAAQLGMNVACI 33


>gi|121594191|ref|YP_986087.1| dihydrolipoamide dehydrogenase [Acidovorax sp. JS42]
 gi|120606271|gb|ABM42011.1| dihydrolipoamide dehydrogenase [Acidovorax sp. JS42]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIVIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVIVIGAGPGGYIAAIRAAQLGMNVACI 33


>gi|77458968|ref|YP_348474.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           [Pseudomonas fluorescens Pf0-1]
 gi|77382971|gb|ABA74484.1| putative FAD dependent oxidoreductase [Pseudomonas fluorescens
           Pf0-1]
          Length = 455

 Score = 44.2 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 101/322 (31%), Gaps = 61/322 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----LVRE 61
           DVIVIG G AG   A     LGA   ++  + +  G+   N    G   G      L R 
Sbjct: 43  DVIVIGAGFAGLSTALELTALGAKVIILEQEFAGFGASGRNAGYLGGSIGIEFELFLKRV 102

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKG-----PAVRGPRT-----QADRELYRLAMQREI 111
                  + R  D A         + G      A    R      Q  R    +A+  E+
Sbjct: 103 GKEKAQNIVRFYDEAVAYVEGRLRELGIDCDYNASGIIRAGIHPSQEKRLRKSMAVGHEL 162

Query: 112 LSQ-ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            SQ E LD  Q    G                       +    GT   G   +G     
Sbjct: 163 GSQTEFLDQAQMRARGIPP--------------AFLFGCLQRHGGTLDPGKYVMGLR--- 205

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGK----TIIWDKTEKQFA--DERLI 224
             R        L+ +     +  G   T    R         +  +    Q     ++++
Sbjct: 206 --RAALQAGVRLYENTTLESYSDGPTITCRTPRGRASAPIVVLATNAYTPQLGLLRDKVV 263

Query: 225 PF---SFMTDKITNRQIEC--GITRTNLETHRIIMENIKHSAIYS--GDIKSYGPRYC-- 275
           PF   +  T+ +T +Q+       R  L T  ++ME+ + +A  +     K  G  Y   
Sbjct: 264 PFRVSAVETEPLTPQQLASLGWAGREGLTTPHLVMESHRLTARNTLLMTTKRLGYAYGSK 323

Query: 276 -PSIEDKI----------VRFG 286
            P+I D++          VRF 
Sbjct: 324 TPNIPDEVTYRALQDNLGVRFP 345


>gi|309812295|ref|ZP_07706050.1| geranylgeranyl reductase family [Dermacoccus sp. Ellin185]
 gi|308433600|gb|EFP57477.1| geranylgeranyl reductase family [Dermacoccus sp. Ellin185]
          Length = 440

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 57/184 (30%), Gaps = 40/184 (21%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             S DVIV+G G  G   AA  A+ G    L+  KT       C   +        V+EI
Sbjct: 13  TESADVIVVGAGPGGSTVAAYLAQAGLDVLLLE-KTRFPREKVCGDGLTPRA----VKEI 67

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL------YRLAMQRE----IL 112
           DAL             +   L        RG R Q D         Y L   R+    IL
Sbjct: 68  DALGIPTPESEGWIRNKGLRL------VGRGMRLQVDWPDEGAFPAYGLVRTRQDFDDIL 121

Query: 113 SQENLDVIQGE-------VAGFNTEKNIISSIV----------MQDNSMIRCSTVVLTTG 155
           +Q    V QG        V     E   ++ +             + +  R   VV   G
Sbjct: 122 AQH--AVAQGARLLQGVNVTAPIVENGRVAGVEAKLLGGDGRATGEKATYRAPLVVACDG 179

Query: 156 TFLR 159
              R
Sbjct: 180 NSSR 183


>gi|315501185|ref|YP_004080072.1| geranylgeranyl reductase [Micromonospora sp. L5]
 gi|315407804|gb|ADU05921.1| geranylgeranyl reductase [Micromonospora sp. L5]
          Length = 424

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DVIV+G G  G   A   A+ G    L+  KT       C   +       L+R
Sbjct: 9  DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLIR 61


>gi|302864900|ref|YP_003833537.1| geranylgeranyl reductase [Micromonospora aurantiaca ATCC 27029]
 gi|302567759|gb|ADL43961.1| geranylgeranyl reductase [Micromonospora aurantiaca ATCC 27029]
          Length = 424

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DVIV+G G  G   A   A+ G    L+  KT       C   +       L+R
Sbjct: 9  DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLIR 61


>gi|242398756|ref|YP_002994180.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermococcus sibiricus MM 739]
 gi|242265149|gb|ACS89831.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermococcus sibiricus MM 739]
          Length = 418

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M    YDVIVIGGG +G  AA   A+ G S  L+  K  
Sbjct: 1  MKTYEYDVIVIGGGPSGLAAATKLAEKGYSVGLVERKEE 39


>gi|149198500|ref|ZP_01875545.1| hypothetical protein LNTAR_06699 [Lentisphaera araneosa HTCC2155]
 gi|149138506|gb|EDM26914.1| hypothetical protein LNTAR_06699 [Lentisphaera araneosa HTCC2155]
          Length = 620

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+V+GGG AG  AA  A ++GA T L+
Sbjct: 45 DVLVVGGGSAGHVAAIQAGRMGAKTVLL 72


>gi|89070936|ref|ZP_01158165.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Oceanicola granulosus HTCC2516]
 gi|89043486|gb|EAR49699.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Oceanicola granulosus HTCC2516]
          Length = 403

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG--LGKGHLVREI 62
           V+VIGGG+ G EAAAVAA+ G    L+         + +   +        G G  VRE 
Sbjct: 147 VLVIGGGYIGLEAAAVAARKGLHVTLVEMAPRILQRVAADVTSDFFRALHAGHGVDVREG 206

Query: 63  DALDGLMGRVA 73
             LD L+G  A
Sbjct: 207 VGLDRLLGTDA 217


>gi|150017584|ref|YP_001309838.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904049|gb|ABR34882.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 647

 Score = 44.2 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V+VIG G AG EAA VAA  G    L       +        IGG           A  
Sbjct: 384 NVVVIGAGPAGLEAARVAAIEGHKVTLFE--KEKV--------IGGQIAAVST---PAFK 430

Query: 67  GLMGRVADAAGIQFRVLNVK 86
             + R+ D  G+Q + LNVK
Sbjct: 431 NKLCRLIDWYGVQLKKLNVK 450


>gi|323485076|ref|ZP_08090429.1| alkyl hydroperoxide reductase F subunit [Clostridium symbiosum
           WAL-14163]
 gi|323401632|gb|EGA93977.1| alkyl hydroperoxide reductase F subunit [Clostridium symbiosum
           WAL-14163]
          Length = 564

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 30/145 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI++GGG AG  AA   A+      +   +   IG           G+  +  E
Sbjct: 1   MEQLYDVIIVGGGPAGLSAAIYMARARYKVLV--MEKEKIG-----------GQITITAE 47

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I    G+  R +     Q      +   A        D EL           QEN+ V+ 
Sbjct: 48  IVNYPGV-ERTSGKELTQSMKEQAEAFGAEFVMAEVLDMEL-----------QENIKVLH 95

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIR 146
                          +V+   +  R
Sbjct: 96  TTAGE-----YRALGVVLATGANPR 115


>gi|310826263|ref|YP_003958620.1| hypothetical protein ELI_0642 [Eubacterium limosum KIST612]
 gi|308737997|gb|ADO35657.1| hypothetical protein ELI_0642 [Eubacterium limosum KIST612]
          Length = 404

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKGHL 58
          + +DVIV+GGG AG  AA   A+    T ++       + +T   +   P       GH 
Sbjct: 2  KIFDVIVLGGGPAGYTAALYCARANLKTMILEKMWPGGQMATTSQVDNYPGFNEGIDGHE 61

Query: 59 VRE 61
          + E
Sbjct: 62 LSE 64


>gi|260436739|ref|ZP_05790709.1| dihydrolipoyl dehydrogenase [Synechococcus sp. WH 8109]
 gi|260414613|gb|EEX07909.1| dihydrolipoyl dehydrogenase [Synechococcus sp. WH 8109]
          Length = 480

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G  TA++       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLKTAIVE-SRDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 I 62
          +
Sbjct: 66 L 66


>gi|154300851|ref|XP_001550840.1| hypothetical protein BC1G_10725 [Botryotinia fuckeliana B05.10]
 gi|150856473|gb|EDN31665.1| hypothetical protein BC1G_10725 [Botryotinia fuckeliana B05.10]
          Length = 1327

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------THKTSTIGSMSCNP 48
           ++  SYDV+VIG G+ G  AA+  A+ G S  L+            +    TI  +  + 
Sbjct: 118 LLRNSYDVVVIGSGYGGSVAASRMARAGQSVCLLERGKEKWPGEYPSGTKDTIEELHVSG 177

Query: 49  AIG-GLGKGHLVREIDALD 66
               G+  G +V E D   
Sbjct: 178 NFAPGILPGMMVEEGDPTG 196


>gi|126696158|ref|YP_001091044.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9301]
 gi|126543201|gb|ABO17443.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9301]
          Length = 446

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRHMRMISPS 72


>gi|114320878|ref|YP_742561.1| hypothetical protein Mlg_1725 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227272|gb|ABI57071.1| HI0933 family protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 397

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           YDVIVIG G AG   A  A   G    +          +     + G G+ +
Sbjct: 9  HYDVIVIGAGAAGLMCALTAGGRGRRVLV----LDHANKVGKKILMSGGGRCN 57


>gi|38489206|gb|AAR21288.1| 2-oxoglutarate dehydrogenase E3 component [Bartonella henselae]
          Length = 468

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 14/160 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
           SYDV+VIG G  G  AA  AA+LG  TA+I  + +  G+   + C P+   L    +  E
Sbjct: 2   SYDVVVIGAGPGGYVAAIKAAQLGLKTAIIEKRMTLGGTCLNVGCIPSKALLHASEVFAE 61

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                  +G     + +    +   K   V    +              ++ +  +D   
Sbjct: 62  TQHGFETLGISIAKSKLNLEQMMAHKKAVVTANTSGVS----------FLMKKNKIDTFF 111

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           G     N  +  +      +   I    +++ TG+   G+
Sbjct: 112 GTAKILNAGQIEVV-ARDGNKQTIETKNIIIATGSESSGI 150


>gi|329896407|ref|ZP_08271506.1| oxidoreductase, FAD-dependent [gamma proteobacterium IMCC3088]
 gi|328921827|gb|EGG29198.1| oxidoreductase, FAD-dependent [gamma proteobacterium IMCC3088]
          Length = 550

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           V VIG G AG  AA   A  G   ++       I + +   A G
Sbjct: 166 VAVIGAGLAGSFAAYALANRGIKVSV--IDPEGIATQASGNAQG 207


>gi|330467372|ref|YP_004405115.1| amine oxidase [Verrucosispora maris AB-18-032]
 gi|328810343|gb|AEB44515.1| amine oxidase [Verrucosispora maris AB-18-032]
          Length = 469

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVIV+G G AG  AA    + G    ++
Sbjct: 42 HAYDVIVVGAGFAGITAARDLRRKGLRVLIL 72


>gi|325688762|gb|EGD30771.1| thioredoxin reductase [Streptococcus sanguinis SK115]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|297617063|ref|YP_003702222.1| FAD dependent oxidoreductase [Syntrophothermus lipocalidus DSM
          12680]
 gi|297144900|gb|ADI01657.1| FAD dependent oxidoreductase [Syntrophothermus lipocalidus DSM
          12680]
          Length = 431

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          M    +  +V+G G AG  AA   A+ G    L         S       GG 
Sbjct: 1  MAEEKFTAVVVGAGPAGSTAAYTMAREGLDVLL----IDRADSPGAKNMFGGR 49


>gi|293372846|ref|ZP_06619224.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292632221|gb|EFF50821.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 624

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T ++  +T  +G M  +  +     G+     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAATLIVE-ETEWLGGMLTSAGVS-AVDGNYDLPA 80

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
                  G +AD  G     L+  K           +  +        + +++NL V   
Sbjct: 81  GLFGEFRGHLADYYGG----LDSLKT--GWVSAVLFEPSVGNKIFHEMVDAEKNLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     E +  I+ I M+DN++ +    +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLERENDAWIAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKYDVG 186


>gi|259415401|ref|ZP_05739322.1| probable N-methylproline demethylase [Silicibacter sp. TrichCH4B]
 gi|259348631|gb|EEW60393.1| probable N-methylproline demethylase [Silicibacter sp. TrichCH4B]
          Length = 681

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIVGAGPAGLEAARVAAERGHKVVVFEAQPD 420


>gi|237716092|ref|ZP_04546573.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407704|ref|ZP_06084252.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643812|ref|ZP_06721610.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294808473|ref|ZP_06767226.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443739|gb|EEO49530.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354512|gb|EEZ03604.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640901|gb|EFF59121.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294444401|gb|EFG13115.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 624

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T ++  +T  +G M  +  +     G+     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAATLIVE-ETEWLGGMLTSAGVS-AVDGNYDLPA 80

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
                  G +AD  G     L+  K           +  +        + +++NL V   
Sbjct: 81  GLFGEFRGHLADYYGG----LDSLKT--GWVSAVLFEPSVGNKIFHEMVDAEKNLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     E +  I+ I M+DN++ +    +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLERENDAWIAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKYDVG 186


>gi|159028731|emb|CAO88203.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 587

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 82/528 (15%), Positives = 160/528 (30%), Gaps = 85/528 (16%)

Query: 3   NRSYDVIVIGGGHAG-CEAAAVAAKL-GASTALITHKTSTIG--SMSCNPAIGGLGKGHL 58
           ++ YDVI++G G AG C+A  +  K+     AL+  +        +    +   +    L
Sbjct: 4   DKEYDVIIMGAGFAGLCQARHLMLKIPNIKVALVDPRPEQRTDKDLKIGESTIEIAALFL 63

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPA----------------VRGPRTQADREL 102
            +E+   D L+   A   G+ F      K PA                V  P  Q +R  
Sbjct: 64  AKELGLHDYLIENHAPKQGLNFHW---PKNPAKTETIDDYYHAGSNRQVPIPSFQINRSK 120

Query: 103 YRLAMQREILSQENLDVIQGEVAGF-NTEKNIISSIVMQDN---SMIRCSTVVLTTGTFL 158
           +   + +   +   ++   G+V     T  + I ++ ++       ++   V+   G   
Sbjct: 121 FEQDLLKMDKA-MGINFYNGQVVDVDLTPGDAIKTVKIKVGDERMELQAKHVIDAAG--R 177

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           + +I      +          N+        + D     +G    L+  T  +  T   F
Sbjct: 178 KFIIGRKTDNLLFSPENLMGLNTGSAWVRVKNVDRTIFHSGYDP-LNASTSHYYSTNHYF 236

Query: 219 ADER---LIPFSFMTDKI------TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKS 269
            +     +IP    T ++       +  I      +  + H  +  N +  A      ++
Sbjct: 237 GEGHWLWMIPIDTQTMELSIGVIHHHDVINSTQVNSREKFHDFLRNNHQILANIIDSGEA 296

Query: 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT--------DVVYPNGIST-ALPEEIQH 320
               Y P I             +    P+            D  Y  G +T AL  E   
Sbjct: 297 VDFHYWPRISHTS---------KTLFSPDNWYVLGDAAYIFDAFYSYGTTTIALAIEGIT 347

Query: 321 QFIRT-IPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAA 379
           + +R  + G       R  Y    ++     L  +   + ++ L+             A 
Sbjct: 348 EIVRAKLAGEADAEQKRAAY---NEF----NLAYS---RSVNCLY----------RGHAK 387

Query: 380 AQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
             G  A + S R   +       +   Y+G    DLT   +     + T  +        
Sbjct: 388 QLG-QASVMSWRIYFEYMWWFGVQVPMYVGKWHLDLTYIPIF----LKTLNSNIDGLFAD 442

Query: 440 DNADN-RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
            N     L    + +G +   R  +  K           L++     +
Sbjct: 443 LNEQFTELADKDVNIGLMDCYRGDQLFKGYHTLKHFDDFLENTKFEPR 490


>gi|1094067|prf||2105282A Sar oxidase
          Length = 390

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 1  MSTHFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 48


>gi|1351039|sp|P40859|MSOX_BACB0 RecName: Full=Monomeric sarcosine oxidase; Short=MSOX
 gi|984788|dbj|BAA03967.1| sarcosine oxidase [Bacillus sp. B-0618]
          Length = 390

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 1  MSTHFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 48


>gi|99078480|ref|YP_611738.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
 gi|99035618|gb|ABF62476.1| dihydrolipoamide dehydrogenase [Ruegeria sp. TM1040]
          Length = 465

 Score = 44.2 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIVIGAGPGGYVSAIRCAQLGLKTAIVEGR-ETLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EIDALDGLMGR 71
          E +   G MG 
Sbjct: 62 EAEHNFGAMGL 72


>gi|330504524|ref|YP_004381393.1| phytoene dehydrogenase-like protein [Pseudomonas mendocina NK-01]
 gi|328918810|gb|AEB59641.1| phytoene dehydrogenase-like protein [Pseudomonas mendocina NK-01]
          Length = 506

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
          + YD +VIG G+AG  AA    + G+ T L+  H  
Sbjct: 2  KHYDAVVIGAGNAGLTAATALQRGGSRTLLVERHNI 37


>gi|325102773|ref|YP_004272427.1| FAD dependent oxidoreductase [Pedobacter saltans DSM 12145]
 gi|324971621|gb|ADY50605.1| FAD dependent oxidoreductase [Pedobacter saltans DSM 12145]
          Length = 613

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            N   DV+++GGG +G  AA  AA++G +  +I  +T+ +G M  +  +  +   H    
Sbjct: 26  FNLQTDVLIVGGGASGVTAAIQAARMGVAVTIIE-ETNWLGGMLTSAGVSAIDGNH---- 80

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                GL G   +     +               T  +  +    ++  +    N+ V  
Sbjct: 81  -QLPSGLWGEFREHLRNHY--GGAAALETGWVSNTLFEPSVGNKILKEMVAKHANIAVFY 137

Query: 122 GEVAGFNTEKNIISSIVMQDNS---MIRCSTVVLTTG 155
           G       ++     +  +  S    I    VV  T 
Sbjct: 138 GSSLSKIEKQEKGWKVDFKRGSTLFKINAKIVVDATE 174


>gi|320108685|ref|YP_004184275.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Terriglobus saanensis SP1PR4]
 gi|319927206|gb|ADV84281.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Terriglobus saanensis SP1PR4]
          Length = 465

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YD+IVIG G +G  AA  AAKLG   ALI  
Sbjct: 1  MTTVYDLIVIGSGPSGQRAAIYAAKLGKKVALIEM 35


>gi|269103743|ref|ZP_06156440.1| NAD(FAD)-utilizing dehydrogenase [Photobacterium damselae subsp.
          damselae CIP 102761]
 gi|268163641|gb|EEZ42137.1| NAD(FAD)-utilizing dehydrogenase [Photobacterium damselae subsp.
          damselae CIP 102761]
          Length = 411

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + + +DV+VIG G AG   AA A K G S  ++ H
Sbjct: 17 MAKKFDVVVIGAGAAGLMCAAEAGKRGRSVLVVDH 51


>gi|197105835|ref|YP_002131212.1| FAD dependent oxidoreductase [Phenylobacterium zucineum HLK1]
 gi|196479255|gb|ACG78783.1| FAD dependent oxidoreductase [Phenylobacterium zucineum HLK1]
          Length = 393

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT------HKTSTIGSMSCNPAIGGLGK 55
          ++   DV+VIGGG  G  AA   A+ GA   L+       H +    +            
Sbjct: 1  MSAKADVLVIGGGLHGLSAALQIARRGARVTLLERRRVGRHSSGASAAGVRTLGRARAEL 60

Query: 56 GHLVREIDALDGLMGRVADAAGIQ 79
             +  +    G+   V D  G  
Sbjct: 61 PLSLAAMTMWHGIAEIVGDDCGFH 84


>gi|229541155|ref|ZP_04430215.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Bacillus coagulans 36D1]
 gi|229325575|gb|EEN91250.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Bacillus coagulans 36D1]
          Length = 551

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          ++DVIV+G G AG  A A  A+ G    L+  +  T        +IGG  
Sbjct: 2  NFDVIVVGAGLAGLVATAEMAEGGKKVLLLDQEPET--------SIGGQA 43


>gi|123968355|ref|YP_001009213.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. AS9601]
 gi|123198465|gb|ABM70106.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. AS9601]
          Length = 446

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRHMRMISPS 72


>gi|72381928|ref|YP_291283.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. NATL2A]
 gi|72001778|gb|AAZ57580.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. NATL2A]
          Length = 547

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCN 47
          MI++ Y+VI+IG G  G  AA   AK G    +I            G+  CN
Sbjct: 1  MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQAKGTEPCN 52


>gi|332362969|gb|EGJ40758.1| thioredoxin reductase [Streptococcus sanguinis SK49]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|325697691|gb|EGD39576.1| thioredoxin reductase [Streptococcus sanguinis SK160]
 gi|327459297|gb|EGF05643.1| thioredoxin reductase [Streptococcus sanguinis SK1]
 gi|327490514|gb|EGF22295.1| thioredoxin reductase [Streptococcus sanguinis SK1058]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|324991753|gb|EGC23685.1| thioredoxin reductase [Streptococcus sanguinis SK353]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|160898934|ref|YP_001564516.1| dihydrolipoamide dehydrogenase [Delftia acidovorans SPH-1]
 gi|160364518|gb|ABX36131.1| dihydrolipoamide dehydrogenase [Delftia acidovorans SPH-1]
          Length = 484

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIVIG G  G  AA  AA+LG + A I
Sbjct: 10 MSKQFDVIVIGAGPGGYIAAIRAAQLGFNVACI 42


>gi|91070297|gb|ABE11215.1| aromatic-ring hydroxylase [uncultured Prochlorococcus marinus
          clone HF10-88D1]
          Length = 446

 Score = 44.2 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRHMRMISPS 72


>gi|332366377|gb|EGJ44128.1| thioredoxin reductase [Streptococcus sanguinis SK355]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|332358041|gb|EGJ35874.1| thioredoxin reductase [Streptococcus sanguinis SK1056]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|330999552|ref|ZP_08323265.1| FAD binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329574650|gb|EGG56213.1| FAD binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 505

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG-------HLV 59
           D++V+G G AG  AA  AA+ G    L+       GS      +  +G          L 
Sbjct: 30  DILVVGAGSAGLTAAVQAAEKGKKVILLEKNLGVGGSSQFAEGLFAVGSEWNRLRSDPLT 89

Query: 60  REIDALDGLM---GRVADAAGIQFRVLNVKKG---PAVRGPRTQADREL-YRLAMQREIL 112
           +E +A   LM   G V DAA  +  V    +     A  G + +  R   +  A    I 
Sbjct: 90  KE-EAFKTLMEKHGYVIDAAKTKDYVEGSAENISWLAGHGIKFEVVRMTPWEAATWHVIS 148

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNS 143
             +  +   G + G     +  + +  +  +
Sbjct: 149 DYKGTNHGAGLIKGLKDAADK-AGVETKLGT 178


>gi|328945049|gb|EGG39205.1| thioredoxin reductase [Streptococcus sanguinis SK1087]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|327472722|gb|EGF18149.1| thioredoxin reductase [Streptococcus sanguinis SK408]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|327467230|gb|EGF12734.1| thioredoxin reductase [Streptococcus sanguinis SK330]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|327462435|gb|EGF08760.1| thioredoxin reductase [Streptococcus sanguinis SK1057]
          Length = 302

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|323350319|ref|ZP_08085984.1| thioredoxin reductase [Streptococcus sanguinis VMC66]
 gi|322123504|gb|EFX95175.1| thioredoxin reductase [Streptococcus sanguinis VMC66]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|299147712|ref|ZP_07040775.1| oxidoreductase, FAD-dependent [Bacteroides sp. 3_1_23]
 gi|298513895|gb|EFI37781.1| oxidoreductase, FAD-dependent [Bacteroides sp. 3_1_23]
          Length = 550

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLVELGLRPIVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|295084626|emb|CBK66149.1| Uncharacterized FAD-dependent dehydrogenases [Bacteroides
           xylanisolvens XB1A]
          Length = 549

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 49/178 (27%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNIDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 198 ENMRNTIIECGGEVHFQTRMEALIIENDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|302381596|ref|YP_003817419.1| FAD dependent oxidoreductase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192224|gb|ADK99795.1| FAD dependent oxidoreductase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 438

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALD 66
           V ++GGG +G   AA  A+ GA + LI       +G     P       GHL+    A  
Sbjct: 8   VAIVGGGFSGAMLAARLAERGAPSILINRTADFGLGVAYSTPF-----DGHLLNVRSARM 62

Query: 67  GLM----GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
             +    G            L    G A R         LY  +   E+ ++    + + 
Sbjct: 63  SALAEDPGHFVRWLQDHHPSLADPDGFAPRRLFG-----LYVQSRLAEVEARHPGRIQRR 117

Query: 122 -GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             EVA    E      + + D ++I    VVLTTG 
Sbjct: 118 IAEVAAIVPE-----GVRLDDGAVIAADAVVLTTGN 148


>gi|125718663|ref|YP_001035796.1| thioredoxin reductase [Streptococcus sanguinis SK36]
 gi|125498580|gb|ABN45246.1| Thioredoxin reductase, putative [Streptococcus sanguinis SK36]
 gi|332364594|gb|EGJ42363.1| thioredoxin reductase [Streptococcus sanguinis SK1059]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|92113701|ref|YP_573629.1| soluble pyridine nucleotide transhydrogenase [Chromohalobacter
           salexigens DSM 3043]
 gi|118573880|sp|Q1QX78|STHA_CHRSD RecName: Full=Soluble pyridine nucleotide transhydrogenase;
           Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
           [B-specific]
 gi|91796791|gb|ABE58930.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Chromohalobacter salexigens DSM 3043]
          Length = 463

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 33/290 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   ++DV+VIG G AG  AA  AAK G   A++  + +  G+ +    I      H V+
Sbjct: 1   MAVHNFDVVVIGSGPAGESAAINAAKHGKRVAIVEKQQAVGGNCTHWGTIPSKALRHQVK 60

Query: 61  EI-----DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL--- 112
           +I     + +   +G     +    RVL   K       + +   + Y            
Sbjct: 61  QIMQFNTNRMFRDIGEPRWFSFP--RVLERSK--VTIDQQVEMRTQFYSRNRINLFFGVA 116

Query: 113 ---SQENLDVI--QGEVAGFNTEKNIISS---------IVMQDNSMIRCSTVVLTTGT-- 156
               +  L V   Q  V     ++ +I++         I  +   +    T++  + T  
Sbjct: 117 RFRDEHTLTVRDNQDGVEELCAQQFVIATGSRPYRPADINFRHPRIYCSDTILGLSHTPR 176

Query: 157 ----FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD 212
               F  GVI      I +G         +    + F  D          R +G  +  +
Sbjct: 177 TLIIFGAGVIGSEYASIFSGLGVKVDLIDMRERLLSFLDDEISDALSYHLRQNGVLVRHN 236

Query: 213 K-TEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA 261
           +  E    DE  +     + K                T  + +ENI    
Sbjct: 237 EDYESIEGDESGVIVKLKSGKRLRADAFLWANGRTGNTDELGLENIGLEP 286


>gi|116620198|ref|YP_822354.1| soluble pyridine nucleotide transhydrogenase [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116223360|gb|ABJ82069.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Candidatus Solibacter usitatus Ellin6076]
          Length = 462

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + +D+IVIG G AG  AA   AK G   A+I  
Sbjct: 2  QKFDIIVIGSGPAGQRAAIQGAKCGRRVAVIEQ 34


>gi|332018285|gb|EGI58890.1| Electron transfer flavoprotein-ubiquinone oxidoreductase,
           mitochondrial [Acromyrmex echinatior]
          Length = 606

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 35/204 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++++GGG AG  AA  A +L                       G   +  LV +  A+ 
Sbjct: 59  DILIVGGGPAGLSAAIQARRLAEK-------------------HGKELRVTLVEKASAIG 99

Query: 67  G--LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           G  L G   D   +     N K+  A        D+  +   M+R      ++ + +G  
Sbjct: 100 GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEMKRI-----SIPIFKGMP 154

Query: 125 AGFNTEKNIIS--SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA------GRMGD 176
             +N    I+    +V         + V +  G     V++     +        G   D
Sbjct: 155 M-YNHGNYIVRLGHVVTWLGEQAEAAGVEIYPGYAAAEVLYHEDGSVKGVATNDVGIAKD 213

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGT 200
                 F   M+          G 
Sbjct: 214 GSPKDTFERGMELHAKCTIFAEGC 237


>gi|170781306|ref|YP_001709638.1| putative oxidoreductase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155874|emb|CAQ01001.1| putative oxidoreductase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 333

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGKG--HLV 59
            + +D +VIGGG AG  AA + A+   S  ++   +     +   +  +G  GK    L+
Sbjct: 10  QQKWDAVVIGGGVAGSSAALMLARARRSVLVVDAGQPRNAVAAHMHGVLGHDGKPPRQLI 69

Query: 60  REIDA-LDGLMGRVADAAGIQFRVLNVKKGPAVRGP 94
            E    ++G  G V D    +   L    GP  R  
Sbjct: 70  AEGRREIEGYGGVVVDGRVERVAALEDPAGPRFRVT 105


>gi|79328611|ref|NP_001031935.1| SQP1; squalene monooxygenase [Arabidopsis thaliana]
 gi|332005880|gb|AED93263.1| Squalene monooxygenase 1,1 [Arabidopsis thaliana]
          Length = 490

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         I      P        +G     
Sbjct: 47  DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCL 106

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N               R  +   ++++  S  N
Sbjct: 107 EGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGR--FVQRLRQKASSLPN 164

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 165 VRLEEGTVKSLIEEKGVIKGV 185


>gi|78779152|ref|YP_397264.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9312]
 gi|78712651|gb|ABB49828.1| geranylgeranyl reductase [Prochlorococcus marinus str. MIT 9312]
          Length = 446

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRHMRMISPS 72


>gi|49476301|ref|YP_034342.1| dihydrolipoamide dehydrogenase [Bartonella henselae str. Houston-1]
 gi|49239109|emb|CAF28413.1| Dihydrolipoamide dehydrogenase [Bartonella henselae str. Houston-1]
          Length = 468

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 14/160 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
           SYDV+VIG G  G  AA  AA+LG  TA+I  + +  G+   + C P+   L    +  E
Sbjct: 2   SYDVVVIGAGPGGYVAAIKAAQLGLKTAIIEKRMTLGGTCLNVGCIPSKALLHASEVFAE 61

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                  +G     + +    +   K   V    +              ++ +  +D   
Sbjct: 62  TQHGFETLGISIAKSKLNLEQMMAHKKAVVTANTSGVS----------FLMKKNKIDTFF 111

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           G     N  +  +      +   I    +++ TG+   G+
Sbjct: 112 GTAKILNAGQIEVV-ARDGNKQTIETKNIIIATGSESSGI 150


>gi|15237902|ref|NP_197803.1| SQP1; squalene monooxygenase [Arabidopsis thaliana]
 gi|11467948|sp|O65404|ERG11_ARATH RecName: Full=Squalene monooxygenase 1,1; AltName: Full=Squalene
           epoxidase 1,1; Short=SE 1,1
 gi|9757924|dbj|BAB08406.1| squalene monooxygenase [Arabidopsis thaliana]
 gi|222422883|dbj|BAH19428.1| AT5G24150 [Arabidopsis thaliana]
 gi|332005879|gb|AED93262.1| Squalene monooxygenase 1,1 [Arabidopsis thaliana]
          Length = 516

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         I      P        +G     
Sbjct: 47  DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCL 106

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N               R  +   ++++  S  N
Sbjct: 107 EGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGR--FVQRLRQKASSLPN 164

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 165 VRLEEGTVKSLIEEKGVIKGV 185


>gi|3123331|emb|CAA06772.1| squalene epoxidase homologue [Arabidopsis thaliana]
          Length = 514

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         I      P        +G     
Sbjct: 45  DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCL 104

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N               R  +   ++++  S  N
Sbjct: 105 EGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGR--FVQRLRQKASSLPN 162

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 163 VRLEEGTVKSLIEEKGVIKGV 183


>gi|84683768|ref|ZP_01011671.1| b-carotene ketolase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668511|gb|EAQ14978.1| b-carotene ketolase [Rhodobacterales bacterium HTCC2654]
          Length = 526

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV+V+G GH G  AA   A+ G    ++
Sbjct: 3  NYDVVVMGAGHNGLVAACYLARAGKKVLIL 32


>gi|330508917|ref|YP_004385345.1| geranylgeranyl reductase [Methanosaeta concilii GP-6]
 gi|328929725|gb|AEB69527.1| geranylgeranyl reductase [Methanosaeta concilii GP-6]
          Length = 394

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC--NPAIGGLGKGHL 58
           ++   +DV VIG G AG  AA  AAK GA+  ++    +    + C     +G L +  L
Sbjct: 3   ILKERFDVAVIGAGPAGSMAAKYAAKSGANAVILEEHPAVGWPVECAGLLGLGALAESEL 62

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                 L  + G    + G        +   A    R   DR     A+   +  +    
Sbjct: 63  PGSSFVLRRMKGAAIYSPGGNRLDFKAQDPRASVVDRRLFDRAAACEALHEGVEMR---- 118

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            +   V     E    S + +     IR S V+   G   R
Sbjct: 119 -LCSPVRRIRREGEE-SVLSIGGGDEIRASIVISAEGVRGR 157


>gi|325695205|gb|EGD37106.1| thioredoxin reductase [Streptococcus sanguinis SK150]
          Length = 302

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|324994090|gb|EGC26004.1| thioredoxin reductase [Streptococcus sanguinis SK678]
          Length = 304

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|319939690|ref|ZP_08014049.1| thioredoxin reductase [Streptococcus anginosus 1_2_62CV]
 gi|319811279|gb|EFW07585.1| thioredoxin reductase [Streptococcus anginosus 1_2_62CV]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     AL+
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALL 30


>gi|319650987|ref|ZP_08005122.1| reductase [Bacillus sp. 2_A_57_CT2]
 gi|317397343|gb|EFV78046.1| reductase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSCN----------PAIGG 52
           +YD +++GGG AG +AA    +      ++      STI     N          P +  
Sbjct: 2   NYDCLIVGGGIAGLQAAIQLGRYKHKVLVLDSNDGRSTICKSYHNILGYPDGVSGPELRE 61

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR 95
           +GK H               A+     F V + +KG    G R
Sbjct: 62  IGKKHAESLGVKFVNEKVEHAEKTDGGFEV-SSQKGNKYVGKR 103


>gi|91777427|ref|YP_552635.1| putative opine oxidase subunit a [Burkholderia xenovorans LB400]
 gi|91690087|gb|ABE33285.1| Putative opine oxidase subunit a [Burkholderia xenovorans LB400]
          Length = 472

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + DV+V+G G AG  AA   A+ G  T LI
Sbjct: 11 SETVDVVVVGAGPAGMSAATRTARAGLRTVLI 42


>gi|89896539|ref|YP_520026.1| hypothetical protein DSY3793 [Desulfitobacterium hafniense Y51]
 gi|89335987|dbj|BAE85582.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 701

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V++IG G AG EAA +AAK G    L 
Sbjct: 408 VVIIGAGPAGMEAARIAAKRGHQVILF 434


>gi|187731234|ref|YP_001880459.1| hypothetical protein SbBS512_E1902 [Shigella boydii CDC 3083-94]
 gi|187428226|gb|ACD07500.1| protein FixC homolog [Shigella boydii CDC 3083-94]
          Length = 429

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G   AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDNKFDAIVVGADVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|319651767|ref|ZP_08005893.1| succinate dehydrogenase [Bacillus sp. 2_A_57_CT2]
 gi|317396586|gb|EFV77298.1| succinate dehydrogenase [Bacillus sp. 2_A_57_CT2]
          Length = 586

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 73/253 (28%), Gaps = 41/253 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           VIV+GGG AG  A    A+ G    L +          C    G  G  +   E D+   
Sbjct: 6   VIVVGGGLAGLMATIKVAESGTPVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGDSPWI 64

Query: 65  ------LDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRT 96
                   G           M   A       D  G+ F       L+ ++    +  RT
Sbjct: 65  HFDDTIYGGDFLANQPPVKAMAEAAPGIIHLFDRMGVMFNRTPEGLLDFRRFGGTQHHRT 124

Query: 97  QADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTT 154
                     +   +  Q    V + EVAG  T  E      +V+ D+   +       T
Sbjct: 125 AFAGATTGQQLLYAMDEQ----VRRHEVAGLVTKYEGWEFLGVVIDDDGACKGVVAQNLT 180

Query: 155 GTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214
              ++       +    G       +   NS +        +        +G+ I    T
Sbjct: 181 SMEIKSFAADAVIMASGGPGIIFGKS--TNSVINTGSAASIVYQQGAYYANGEFIQIHPT 238

Query: 215 EKQFADERLIPFS 227
                D++L   S
Sbjct: 239 AI-PGDDKLRLMS 250


>gi|297183593|gb|ADI19720.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 591

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 69/221 (31%), Gaps = 55/221 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTSTIGSMSCNPAIGGLG- 54
           +I+  YDV+V+G G +G  AA   ++ G  TA I     T   ++      + A+G +G 
Sbjct: 6   IIDHEYDVVVLGAGGSGLRAAVGLSETGLKTACISKVFPTRSHTSAAQGGISAALGNMGE 65

Query: 55  -----------KG------------------HLVREIDALDGLMGRVADAAGIQFRVL-- 83
                      KG                    V E++       R  D    Q R    
Sbjct: 66  DDWRWHMYDTVKGADWLGDQDCIEYLCKEAPRAVIELERYGVPFSRTEDGKIYQRRFGGM 125

Query: 84  --NVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
             N  KG A R     ADR        LY  A++           I+        +    
Sbjct: 126 TKNYGKGTAQRTCAA-ADRTGHAILHTLYGQALKHNTE-----FFIEYFALDLLMKDGEC 179

Query: 135 SSIV---MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++   + D ++ R  + +    T   G I+         
Sbjct: 180 KGVIAWNLDDGTIHRFRSHITIIATGGYGKIYYSSTSAHTC 220


>gi|303325537|ref|ZP_07355980.1| adenylylsulfate reductase, subunit A [Desulfovibrio sp. 3_1_syn3]
 gi|302863453|gb|EFL86384.1| adenylylsulfate reductase, subunit A [Desulfovibrio sp. 3_1_syn3]
          Length = 591

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 97/382 (25%), Gaps = 78/382 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAI--------GGLGKGH 57
           D+++IGGG+AGC AA  AA+L  S  ++   K   + S +C   +               
Sbjct: 28  DLLIIGGGNAGCFAAWEAARLDPSLKIVIMEKADIMRSGACAAGMDAINTYIPADKSPED 87

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA------DRELYRLAMQREI 111
           LVR   A  G      D A    R LN          R         D   +        
Sbjct: 88  LVRWSRAQVGGGPLREDLALSNARELNE---CVDDLERWGVPFLKDEDGNKHYRGRWDIS 144

Query: 112 LSQENLDVIQGE-------------VAGFNTEKNII-----SSIVMQDNSMIRCSTVVLT 153
           +  E L  I  E                      +        +      + R    ++ 
Sbjct: 145 IHGEQLKPIMAEKAIESADVYNRVAATSLIVRGGVCLGATGLGVRDGRFYIFRARATIVA 204

Query: 154 TG-------------TFLRGVIHIGKLKIPAGR---------MGDSPSNSLFNSFMKFDF 191
           TG             T     I +    + +G          +       +      F  
Sbjct: 205 TGGAGTLYKSYTADSTDCGAQIWMCPYCVGSGYAIGYRQGAELTSLEQRWVATRTKDFCG 264

Query: 192 DTGRLKTGT-PARLDGKTII-WDKTEKQFADERLIP--FSFMTDKITNRQIECGITRTNL 247
               +  G     ++ +      +      D        +   ++  N +  C       
Sbjct: 265 PVDTISVGYHSPIINARGERVMSRYSHLGGDAAPRYIRANAPMEEWLNGRGPCY------ 318

Query: 248 ETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYP 307
                  +    S   + ++      Y       ++    R       EP  +     Y 
Sbjct: 319 ------CDTTVLSPQAAREMM---EDYLNERPSFVLFLASRGQDVT-KEPIEIYGSDPYI 368

Query: 308 NGISTALPEEIQHQFIRTIPGL 329
            G  T     +    + T+PGL
Sbjct: 369 VGGHTGSGYWVDINRMTTLPGL 390


>gi|296163167|ref|ZP_06845936.1| BFD domain protein (2Fe-2S)-binding domain protein [Burkholderia
          sp. Ch1-1]
 gi|295886594|gb|EFG66443.1| BFD domain protein (2Fe-2S)-binding domain protein [Burkholderia
          sp. Ch1-1]
          Length = 472

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + DV+V+G G AG  AA   A+ G  T LI
Sbjct: 11 SETVDVVVVGAGPAGMSAATRTARAGLRTVLI 42


>gi|289548179|ref|YP_003473167.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Thermocrinis albus DSM 14484]
 gi|289181796|gb|ADC89040.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Thermocrinis albus DSM 14484]
          Length = 408

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 31/162 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLV 59
           + +SYDVIV+G G  G   +   A+ G   AL+               +GG    +G + 
Sbjct: 1   MIKSYDVIVVGSGPGGFNVSLPLARAGLKVALVEGNL-----------LGGTCLNRGCIP 49

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLD 118
           +E       M R+A       R L  K  P  ++       R        R +L +E ++
Sbjct: 50  KEG------MYRIAREVLSLRRKLGTKVKPDFMKALDYVRRRVEKIRENARFLLKREGVE 103

Query: 119 VIQG---EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
            I+G    V           ++ +  N  ++   +VL  G+ 
Sbjct: 104 FIEGYAYMVDE--------QTVKVSRNRYLKGKFLVLACGSL 137


>gi|289433771|ref|YP_003463643.1| NADH:flavin oxidoreductase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170015|emb|CBH26555.1| NADH:flavin oxidoreductase, putative [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 664

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +++VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NIVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|330834177|ref|YP_004408905.1| dihydrolipoamide dehydrogenase [Metallosphaera cuprina Ar-4]
 gi|329566316|gb|AEB94421.1| dihydrolipoamide dehydrogenase [Metallosphaera cuprina Ar-4]
          Length = 449

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 28/157 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+VIGGG AG  AA  A++LG + AL+      IG    N              IDA
Sbjct: 2   EFDVMVIGGGVAGVSAALRASELGKTVALVE--RDQIGGECIN-----RACIPSKTLIDA 54

Query: 65  LD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           +           +   + I +  LN  KG  +   + + ++ L          S+ N+  
Sbjct: 55  VKAISRVSSSPWLISTSKIDYSKLNENKGKIISAIKEKMEKNL----------SKNNVKT 104

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           ++GE       K      V  +  +     +VL+TG+
Sbjct: 105 LKGEA------KIKAQGEVEVNGKIHTSEYLVLSTGS 135


>gi|282852991|ref|ZP_06262328.1| thioredoxin-disulfide reductase [Propionibacterium acnes J139]
 gi|282582444|gb|EFB87824.1| thioredoxin-disulfide reductase [Propionibacterium acnes J139]
 gi|314922784|gb|EFS86615.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL001PA1]
 gi|314965702|gb|EFT09801.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL082PA2]
 gi|314982990|gb|EFT27082.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL110PA3]
 gi|315091496|gb|EFT63472.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL110PA4]
 gi|315094597|gb|EFT66573.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL060PA1]
 gi|315105251|gb|EFT77227.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL050PA2]
 gi|327328882|gb|EGE70642.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL103PA1]
          Length = 350

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 41/171 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVI++G G AG  AA   A+ G    +        G++     +          E 
Sbjct: 41  DEPRDVIIVGSGPAGYTAAVYTARAGLKPLVFEGSMDAGGALMQTTEVENY---PGFSEG 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                LM ++                      R QA+R                 ++I  
Sbjct: 98  IMGPDLMAQM----------------------RAQAERF--------------GAELIAD 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +V   +     I  +V  D +  R   V+L  G+  R  + +      +GR
Sbjct: 122 DVTDIDLTG-EIKKLVDTDGNTYRARVVILAMGSAYR-KLGLEDEPRLSGR 170


>gi|92113345|ref|YP_573273.1| dihydrolipoamide dehydrogenase [Chromohalobacter salexigens DSM
          3043]
 gi|91796435|gb|ABE58574.1| dihydrolipoamide dehydrogenase [Chromohalobacter salexigens DSM
          3043]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGG 52
          +   +DVIVIG G  G  AA  AA+LG  TA +         T    T  ++ C P+   
Sbjct: 1  MADKFDVIVIGAGPGGYVAAIRAAQLGLKTACVEKWVNKEGKTVHGGTCLNVGCIPSKAL 60

Query: 53 LGKGHLVREID 63
          L   H   E  
Sbjct: 61 LETSHKFAEAR 71


>gi|116748618|ref|YP_845305.1| heterodisulfide reductase subunit A [Syntrophobacter fumaroxidans
          MPOB]
 gi|116697682|gb|ABK16870.1| heterodisulfide reductase, subunit A, polyferredoxin
          [Syntrophobacter fumaroxidans MPOB]
          Length = 55

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          DV+VIGGG AG +AA   A +G    ++  K  +IG
Sbjct: 4  DVLVIGGGIAGIQAALDLADMGVRVHMVE-KLPSIG 38


>gi|313634786|gb|EFS01219.1| NADH oxidase [Listeria seeligeri FSL N1-067]
          Length = 664

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +++VIGGG AG EAA  AA++G +T LI   
Sbjct: 385 NIVVIGGGTAGLEAACTAAEVGCNTTLIEAN 415


>gi|296269711|ref|YP_003652343.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermobispora bispora DSM 43833]
 gi|296092498|gb|ADG88450.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermobispora bispora DSM 43833]
          Length = 401

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+V+G G  GCEAAA A +LG    ++  
Sbjct: 150 VVVVGAGFIGCEAAATALRLGCRVTVVEP 178


>gi|290958244|ref|YP_003489426.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260647770|emb|CBG70875.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 938

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 22 DVLVIGGGTAGTMAALTAAEHGADVLLL 49


>gi|261349912|ref|ZP_05975329.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
          2374]
 gi|288860695|gb|EFC92993.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
          2374]
          Length = 402

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +D+ +IGGG AG  AA  A+       L         S+     I G G+ ++  E
Sbjct: 2  EEFDIAIIGGGPAGIMAAIAAS-----ADLNVVLLEKNSSLGSKLLITGGGRCNITNE 54


>gi|222445530|ref|ZP_03608045.1| hypothetical protein METSMIALI_01170 [Methanobrevibacter smithii
          DSM 2375]
 gi|222435095|gb|EEE42260.1| hypothetical protein METSMIALI_01170 [Methanobrevibacter smithii
          DSM 2375]
          Length = 402

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +D+ +IGGG AG  AA  A+       L         S+     I G G+ ++  E
Sbjct: 2  EEFDIAIIGGGPAGIMAAIAAS-----ADLNVVLLEKNSSLGSKLLITGGGRCNITNE 54


>gi|148643295|ref|YP_001273808.1| flavoprotein [Methanobrevibacter smithii ATCC 35061]
 gi|148552312|gb|ABQ87440.1| predicted flavoprotein [Methanobrevibacter smithii ATCC 35061]
          Length = 402

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +D+ +IGGG AG  AA  A+       L         S+     I G G+ ++  E
Sbjct: 2  EEFDIAIIGGGPAGIMAAIAAS-----ADLNVVLLEKNSSLGSKLLITGGGRCNITNE 54


>gi|145596041|ref|YP_001160338.1| kynurenine 3-monooxygenase [Salinispora tropica CNB-440]
 gi|145305378|gb|ABP55960.1| Kynurenine 3-monooxygenase [Salinispora tropica CNB-440]
          Length = 445

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLV 59
           M     +V V+G G +GC  AA  A+ G   AL   +     G +    +I        +
Sbjct: 1   MSTEHTEVAVVGAGLSGCLLAAFLARRGYPVALYERRPDPRTGPVDRGRSINLALSERGL 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG-PAVRGPRTQADR 100
             +  +      +ADA  ++ R+++   G P  +      DR
Sbjct: 61  DALRRIGLDARVMADALPMRGRMIHPVDGEPQFQAYSAAGDR 102


>gi|255931385|ref|XP_002557249.1| Pc12g03690 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581868|emb|CAP79996.1| Pc12g03690 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 388

 Score = 44.2 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +YDVIVIGGG +G  AA+  +++    AL 
Sbjct: 26 QENYDVIVIGGGPSGLSAASALSRVLRKVALF 57


>gi|29831395|ref|NP_826029.1| putative oxidoreductase/HEAT repeat-containing protein
          [Streptomyces avermitilis MA-4680]
 gi|29608510|dbj|BAC72564.1| putative oxidoreductase [Streptomyces avermitilis MA-4680]
          Length = 939

 Score = 44.2 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGADVLLL 42


>gi|154245908|ref|YP_001416866.1| succinate dehydrogenase flavoprotein subunit [Xanthobacter
           autotrophicus Py2]
 gi|154159993|gb|ABS67209.1| succinate dehydrogenase, flavoprotein subunit [Xanthobacter
           autotrophicus Py2]
          Length = 611

 Score = 44.2 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 66/221 (29%), Gaps = 56/221 (25%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL---- 58
           + +YDV+V+G G AG  A    ++ G  TA IT    T        A GG+         
Sbjct: 23  DHTYDVLVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRS--HTVAAQGGVAASLANMGE 80

Query: 59  -VREIDALDGLMGR--VADAAGIQFRVLNVK----------------------------- 86
              E    D + G   + D   I++ V N                               
Sbjct: 81  DKWEWHMYDTVKGSDWLGDQDAIEYMVRNAPAAVYELEHWGVPFSRTEDGKIYQRPFGGM 140

Query: 87  -----KGPAVRGPRTQADRELYRLAMQREI----LSQENLDVIQGEVAGFN-TEKNIISS 136
                KG A R     ADR  +  AM   +    L       ++         E      
Sbjct: 141 TTHYGKGTAQRTCAA-ADRTGH--AMLHTLYGAALKHHAEFFVEYFAIDLIMDEDGRCRG 197

Query: 137 IV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           ++   + D ++   R   VVL TG + R            G
Sbjct: 198 VIAIKLDDGTIHRFRAHLVVLATGGYGRAYFSATSAHTCTG 238


>gi|171915849|ref|ZP_02931319.1| Dihydrolipoyl dehydrogenase [Verrucomicrobium spinosum DSM 4136]
          Length = 464

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   +YD+IVIGGG AG  AA  AA+LG   A +
Sbjct: 1  MEIMTYDLIVIGGGPAGYVAAIRAAQLGKKVACV 34


>gi|148554231|ref|YP_001261813.1| succinate dehydrogenase flavoprotein subunit [Sphingomonas
           wittichii RW1]
 gi|148499421|gb|ABQ67675.1| succinate dehydrogenase subunit A [Sphingomonas wittichii RW1]
          Length = 595

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 74/223 (33%), Gaps = 56/223 (25%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +++  YD +V+G G +G  A   AA  G  TA IT     ++ T+ +      ++G +G 
Sbjct: 7   IVDHLYDAVVVGAGGSGLRATMGAAGAGLKTACITKVFPTRSHTVAAQGGIAASLGNMGP 66

Query: 56  GHLVREI-DALDG-----------LMGRVADAAGIQFR---------------------- 81
            H    + D + G            M R A AA I+                        
Sbjct: 67  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRTEEGKIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-------VAGFNTEKNII 134
           + N+  GP V+     ADR  +  AM   +  Q    +                 E    
Sbjct: 127 MQNMGAGPPVQRTCAAADRTGH--AMLHALYQQ---SLKYDADFYIEYFALDLIMEDGAC 181

Query: 135 SSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++   M+D S+   R   VVL TG   R            G
Sbjct: 182 KGVIALCMEDGSIHRFRSQAVVLATGGSGRTYFSATSAHTCTG 224


>gi|56695089|ref|YP_165436.1| N-methylproline demethylase, putative [Ruegeria pomeroyi DSS-3]
 gi|56676826|gb|AAV93492.1| N-methylproline demethylase, putative [Ruegeria pomeroyi DSS-3]
          Length = 681

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVVVGAGPAGLEAARVAAERGHHVTVFEAQPD 420


>gi|330719348|ref|ZP_08313948.1| thioredoxin-disulfide reductase [Leuconostoc fallax KCTC 3537]
          Length = 314

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++YDV++IG G AG  AA  A++   S  ++
Sbjct: 2  KNYDVVIIGAGPAGMTAATYASRANLSVLML 32


>gi|319787337|ref|YP_004146812.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465849|gb|ADV27581.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 409

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+++G G  G   A   A LG   AL+  +     +    PA  G         +  
Sbjct: 2   QYDVVIVGAGPVGLCLARAVAPLGLKVALVERQP---RAALAEPAFDGREIALTHASMRL 58

Query: 65  LD--GLMGRVADA---AGIQFRVLNVKKGPAVRG-PRTQADR-------ELYRLAMQREI 111
           LD  G+ GR+  A      Q RV++     A+   P    DR        L R A    +
Sbjct: 59  LDELGVNGRIPAAEIHPLRQARVMDRDLAEAMVVRPHGGHDRLGNLVPNHLIRRAAWEAV 118

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--------LRGVIH 163
            +   +++      G        + + +QD   ++   +V     F        +   +H
Sbjct: 119 QATPGIELHDQARIGSLHAGADSAWVQLQDGPRLQARLLVAADSRFSETRRALGIDADLH 178

Query: 164 IGKLKIPAGRM-GDSPSNSLF 183
                +   RM  + P + + 
Sbjct: 179 DFGKSMLVCRMRHEQPHHHVA 199


>gi|298483147|ref|ZP_07001327.1| oxidoreductase, FAD-dependent [Bacteroides sp. D22]
 gi|298270664|gb|EFI12245.1| oxidoreductase, FAD-dependent [Bacteroides sp. D22]
          Length = 549

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNIDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +        Q  +     E + +  I      +     V+L TG   R V 
Sbjct: 198 ENMRNTIIECGGEVHFQTRMEALIIENDEVKGIETNTGKIFLGP-VILATGHSARDVY 254


>gi|289606803|emb|CBI61005.1| unnamed protein product [Sordaria macrospora]
          Length = 305

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKG 56
          M    +DV+VIG G  G  AA  AA+LG  TA    +  T+G    ++ C P+   L   
Sbjct: 1  MAEYDFDVLVIGAGPGGYVAAIRAAQLGLKTACAEGR-ETLGGTCLNVGCIPSKALLHAS 59

Query: 57 HLVREIDALDGLMGR 71
           L  E  A  G + +
Sbjct: 60 ELYEE--ATGGHLAK 72


>gi|288932869|ref|YP_003436929.1| thioredoxin reductase [Ferroglobus placidus DSM 10642]
 gi|288895117|gb|ADC66654.1| thioredoxin reductase [Ferroglobus placidus DSM 10642]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSC---NPAIGGLGKGHL 58
           R +DV +IG G AG  AA  A + G  T +  T + S +         P   G G   L
Sbjct: 14 EREFDVAIIGAGPAGLTAAIYATRYGLKTVVFETVEASQLSLAPKIENYPGFEGSGFELL 73

Query: 59 VR 60
           R
Sbjct: 74 ER 75


>gi|302890365|ref|XP_003044067.1| hypothetical protein NECHADRAFT_34554 [Nectria haematococca mpVI
           77-13-4]
 gi|256724986|gb|EEU38354.1| hypothetical protein NECHADRAFT_34554 [Nectria haematococca mpVI
           77-13-4]
          Length = 536

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 21/245 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++++V+V GG   G   A  AA+LG S AL++     IG +  N  +G     +    
Sbjct: 1   MTQAFEVVVYGGTSGGVATAIQAARLGRSVALVSPN-EHIGGIQIN-GLGATDIDNQAEF 58

Query: 62  IDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-------REIL 112
            ++    GL   + +     +  L   K    +  +   D +++R   +         + 
Sbjct: 59  QNSTTLGGLSLELHERISRHYGRLERLKEVVEKKIK---DPDVWRFEARVAEKIISDWLA 115

Query: 113 SQENLDVIQG---EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT--GTFL--RGVIHIG 165
              N+ +I+    E    + ++  I +I +++   I        +  G  L   G+    
Sbjct: 116 EYSNISIIKSPLKEKNAVDRDEKGILAIHLENGDTIPGKVFAEASYEGDLLAAAGITWTR 175

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +                 + + D D                 I D+   +  D  L  
Sbjct: 176 GRESSKTYNESLAGVRGETLYRQIDVDLDPYVKSGDPSSGLLYGISDEPFGRPGDGDLHL 235

Query: 226 FSFMT 230
            S+  
Sbjct: 236 QSYSY 240


>gi|222111979|ref|YP_002554243.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Acidovorax ebreus TPSY]
 gi|221731423|gb|ACM34243.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Acidovorax ebreus TPSY]
          Length = 537

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 64/220 (29%), Gaps = 28/220 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +  D +VIGGG AG  AA    + G    L+   T            GGL       
Sbjct: 1   MAIQHSDTVVIGGGLAGIVAALELLRAGQRVTLVDRDTPE--------RFGGLA------ 46

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVK-KGPAVRG--PRTQADRELYRLAMQREILS---Q 114
            + A  G M  V      + ++ +   +  A         AD        +  +     Q
Sbjct: 47  -LWAFGG-MALVGTPLQAKMKIPDTPERALADWLRFGELDADDHWPHAWARYYVEHSRVQ 104

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            +  ++Q  V        +   +  + NS+ R   V  T+    R +I   +      R+
Sbjct: 105 VHDWLLQEGVKFMPAVNWVERGLQGEGNSLPRYHIVWGTSRELTRCLIAALRRAGEGSRL 164

Query: 175 GDSPSNSLFNSFMKFDFDTGRL-----KTGTPARLDGKTI 209
                     +                 TG   RL    +
Sbjct: 165 TLL-HGHRATALDHQGGRISGAVAVNEATGEEVRLHAPVV 203


>gi|194377766|dbj|BAG63246.1| unnamed protein product [Homo sapiens]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 30  EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 89

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 90  EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 147

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 148 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 207

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 208 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPR-NLREYMV 266

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 267 EKIYPQIPDHLKEPFLEATDNSHLRSMP 294


>gi|166711805|ref|ZP_02243012.1| hypothetical protein Xoryp_10205 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 393

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSAFTAGRRGRHVMV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                  +              +      +         E + +A   + L Q   D+  
Sbjct: 57  GTTPGNFISANRHFCKSALARYSPSDFVEMV--------ERHAIAYHEKELGQLFCDISS 108

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRC 147
            ++     ++  ++ + ++    +  
Sbjct: 109 KQIVRMLLDECDVAGVQIRTQCEVLS 134


>gi|118586970|ref|ZP_01544402.1| thioredoxin reductase [Oenococcus oeni ATCC BAA-1163]
 gi|118432592|gb|EAV39326.1| thioredoxin reductase [Oenococcus oeni ATCC BAA-1163]
          Length = 313

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV++IG G AG  AA  A++   S  +I
Sbjct: 1  MTQKYDVVIIGAGPAGMTAATYASRANLSVMMI 33


>gi|114621635|ref|XP_001152077.1| PREDICTED: squalene monooxygenase isoform 3 [Pan troglodytes]
          Length = 516

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 67  EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 126

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 127 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 184

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 185 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 244

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 245 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMV 303

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 304 EKIYPQIPDHLKEPFLEATDNSHLRSMP 331


>gi|114621629|ref|XP_519950.2| PREDICTED: squalene monooxygenase isoform 4 [Pan troglodytes]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSMP 389


>gi|114621633|ref|XP_001151888.1| PREDICTED: squalene monooxygenase isoform 1 [Pan troglodytes]
          Length = 467

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSMP 389


>gi|114621631|ref|XP_001151947.1| PREDICTED: squalene monooxygenase isoform 2 [Pan troglodytes]
          Length = 511

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSMP 389


>gi|82702829|ref|YP_412395.1| FAD dependent oxidoreductase [Nitrosospira multiformis ATCC
          25196]
 gi|82410894|gb|ABB75003.1| FAD dependent oxidoreductase [Nitrosospira multiformis ATCC
          25196]
          Length = 366

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG   A   A+ G    L+
Sbjct: 9  DVVVIGGGPAGAICALALARAGVDVKLM 36


>gi|62865635|ref|NP_003120.2| squalene monooxygenase [Homo sapiens]
 gi|296439362|sp|Q14534|ERG1_HUMAN RecName: Full=Squalene monooxygenase; AltName: Full=Squalene
           epoxidase; Short=SE
 gi|4204675|gb|AAD10823.1| squalene epoxidase [Homo sapiens]
 gi|16877565|gb|AAH17033.1| Squalene epoxidase [Homo sapiens]
 gi|119612485|gb|EAW92079.1| squalene epoxidase [Homo sapiens]
 gi|123995963|gb|ABM85583.1| squalene epoxidase [synthetic construct]
 gi|189066635|dbj|BAG36182.1| unnamed protein product [Homo sapiens]
          Length = 574

 Score = 44.2 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 38/268 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQIE 239
           +K   Q  D    PF   TD    R + 
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSMP 389


>gi|331266685|ref|YP_004326315.1| thioredoxin-disulfide reductase [Streptococcus oralis Uo5]
 gi|326683357|emb|CBZ00975.1| thioredoxin-disulfide reductase [Streptococcus oralis Uo5]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|322376909|ref|ZP_08051402.1| thioredoxin-disulfide reductase [Streptococcus sp. M334]
 gi|321282716|gb|EFX59723.1| thioredoxin-disulfide reductase [Streptococcus sp. M334]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|322374581|ref|ZP_08049095.1| thioredoxin-disulfide reductase [Streptococcus sp. C300]
 gi|321280081|gb|EFX57120.1| thioredoxin-disulfide reductase [Streptococcus sp. C300]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|322392215|ref|ZP_08065676.1| thioredoxin reductase [Streptococcus peroris ATCC 700780]
 gi|321144750|gb|EFX40150.1| thioredoxin reductase [Streptococcus peroris ATCC 700780]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|322388154|ref|ZP_08061758.1| thioredoxin reductase [Streptococcus infantis ATCC 700779]
 gi|321140826|gb|EFX36327.1| thioredoxin reductase [Streptococcus infantis ATCC 700779]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|309798504|ref|ZP_07692785.1| thioredoxin reductase [Streptococcus infantis SK1302]
 gi|308117866|gb|EFO55261.1| thioredoxin reductase [Streptococcus infantis SK1302]
          Length = 257

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|307705177|ref|ZP_07642049.1| thioredoxin-disulfide reductase [Streptococcus mitis SK597]
 gi|307621262|gb|EFO00327.1| thioredoxin-disulfide reductase [Streptococcus mitis SK597]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|307709004|ref|ZP_07645464.1| thioredoxin-disulfide reductase [Streptococcus mitis SK564]
 gi|307620340|gb|EFN99456.1| thioredoxin-disulfide reductase [Streptococcus mitis SK564]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|307706927|ref|ZP_07643726.1| thioredoxin-disulfide reductase [Streptococcus mitis SK321]
 gi|307617641|gb|EFN96809.1| thioredoxin-disulfide reductase [Streptococcus mitis SK321]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|307702004|ref|ZP_07639012.1| thioredoxin-disulfide reductase [Streptococcus mitis NCTC 12261]
 gi|307616649|gb|EFN95838.1| thioredoxin-disulfide reductase [Streptococcus mitis NCTC 12261]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|306825522|ref|ZP_07458861.1| thioredoxin-disulfide reductase [Streptococcus sp. oral taxon 071
          str. 73H25AP]
 gi|304431883|gb|EFM34860.1| thioredoxin-disulfide reductase [Streptococcus sp. oral taxon 071
          str. 73H25AP]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|303269186|ref|ZP_07354964.1| thioredoxin reductase [Streptococcus pneumoniae BS458]
 gi|302641310|gb|EFL71679.1| thioredoxin reductase [Streptococcus pneumoniae BS458]
          Length = 289

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|302528248|ref|ZP_07280590.1| predicted protein [Streptomyces sp. AA4]
 gi|302437143|gb|EFL08959.1| predicted protein [Streptomyces sp. AA4]
          Length = 496

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 45/236 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN----PAIGGLGKGHLVREI 62
           +V V+GGG AG   A + A+ G + A++       G+   N     A+       L RE 
Sbjct: 30  EVAVVGGGIAGMTTALLLARRGVNVAVLEAGRVAEGASGNNTAKVTALQSTVYSTLAREH 89

Query: 63  DALD------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
           DA               L+  +A+      R L      A+        R  Y  A +  
Sbjct: 90  DAATAAAYAEAALAGVELVAELAEPIACGLRRL-PAATFAMHADEADTVRAEYEAATRA- 147

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                 L V            +          ++     + L    ++RG+    +    
Sbjct: 148 -----GLPVEWTTTLDLPVPVH---------GAVRLPEQLALHPADYVRGLADAVE--AE 191

Query: 171 AGRMGD---------SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            GR+ +         +P   +       D +   + T  P  +  + + + + E Q
Sbjct: 192 GGRVFENSRGRQVSAAPPYHVTTDDGALDAENVVIATHYP--ILDRGLFFPRLEVQ 245


>gi|289168212|ref|YP_003446481.1| thioredoxin reductase [Streptococcus mitis B6]
 gi|288907779|emb|CBJ22619.1| thioredoxin reductase [Streptococcus mitis B6]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|237821539|ref|ZP_04597384.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae CCRI
          1974M2]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|225859219|ref|YP_002740729.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae 70585]
 gi|225720418|gb|ACO16272.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae 70585]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|182684415|ref|YP_001836162.1| thioredoxin reductase [Streptococcus pneumoniae CGSP14]
 gi|303254995|ref|ZP_07341072.1| thioredoxin reductase [Streptococcus pneumoniae BS455]
 gi|303259054|ref|ZP_07345033.1| thioredoxin reductase [Streptococcus pneumoniae SP-BS293]
 gi|303261734|ref|ZP_07347681.1| thioredoxin reductase [Streptococcus pneumoniae SP14-BS292]
 gi|303264407|ref|ZP_07350327.1| thioredoxin reductase [Streptococcus pneumoniae BS397]
 gi|303266761|ref|ZP_07352643.1| thioredoxin reductase [Streptococcus pneumoniae BS457]
 gi|182629749|gb|ACB90697.1| thioredoxin reductase [Streptococcus pneumoniae CGSP14]
 gi|301802186|emb|CBW34932.1| putative thioredoxin reductase [Streptococcus pneumoniae INV200]
 gi|302598002|gb|EFL65071.1| thioredoxin reductase [Streptococcus pneumoniae BS455]
 gi|302637314|gb|EFL67802.1| thioredoxin reductase [Streptococcus pneumoniae SP14-BS292]
 gi|302639997|gb|EFL70453.1| thioredoxin reductase [Streptococcus pneumoniae SP-BS293]
 gi|302643750|gb|EFL74015.1| thioredoxin reductase [Streptococcus pneumoniae BS457]
 gi|302646219|gb|EFL76446.1| thioredoxin reductase [Streptococcus pneumoniae BS397]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|168575915|ref|ZP_02721830.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          MLV-016]
 gi|183578233|gb|EDT98761.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          MLV-016]
 gi|332199502|gb|EGJ13577.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA41317]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|168493359|ref|ZP_02717502.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC3059-06]
 gi|183576619|gb|EDT97147.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC3059-06]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|169834338|ref|YP_001694874.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|168996840|gb|ACA37452.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          Hungary19A-6]
 gi|332073795|gb|EGI84273.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA41301]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|168486155|ref|ZP_02710663.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC1087-00]
 gi|183570765|gb|EDT91293.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC1087-00]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|149721781|ref|XP_001498357.1| PREDICTED: squalene epoxidase [Equus caballus]
          Length = 576

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG    V
Sbjct: 125 EVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYHVLKDLGLEDAV 184

Query: 60  REIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             IDA   +G M    D+         V +   V+  R       + +++++  +++ N 
Sbjct: 185 EGIDAQFVNGYMIHDQDSKSHVHIPYPVSENSQVQSGRA-FHHGRFIMSLRKAAMAEPNT 243

Query: 118 DVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
             I+G V     E + +  +        D   +     V+  G F R  
Sbjct: 244 KFIEGIVLQLLEEDDAVVGVQYKDKETGDIKELHAPLTVVADGIFSRFR 292


>gi|148984800|ref|ZP_01818053.1| thioredoxin reductase [Streptococcus pneumoniae SP3-BS71]
 gi|149007271|ref|ZP_01830929.1| thioredoxin reductase [Streptococcus pneumoniae SP18-BS74]
 gi|225860773|ref|YP_002742282.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298230953|ref|ZP_06964634.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298254977|ref|ZP_06978563.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502588|ref|YP_003724528.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          TCH8431/19A]
 gi|307126972|ref|YP_003879003.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae 670-6B]
 gi|147761075|gb|EDK68043.1| thioredoxin reductase [Streptococcus pneumoniae SP18-BS74]
 gi|147922822|gb|EDK73938.1| thioredoxin reductase [Streptococcus pneumoniae SP3-BS71]
 gi|225726556|gb|ACO22407.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298238183|gb|ADI69314.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          TCH8431/19A]
 gi|301800308|emb|CBW32934.1| putative thioredoxin reductase [Streptococcus pneumoniae OXC141]
 gi|306484034|gb|ADM90903.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae 670-6B]
 gi|327389643|gb|EGE87988.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA04375]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|148992658|ref|ZP_01822326.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP9-BS68]
 gi|148997483|ref|ZP_01825088.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP11-BS70]
 gi|168483930|ref|ZP_02708882.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC1873-00]
 gi|168489619|ref|ZP_02713818.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae SP195]
 gi|307068108|ref|YP_003877074.1| thioredoxin reductase [Streptococcus pneumoniae AP200]
 gi|147756538|gb|EDK63579.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP11-BS70]
 gi|147928675|gb|EDK79689.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP9-BS68]
 gi|172042805|gb|EDT50851.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          CDC1873-00]
 gi|183572011|gb|EDT92539.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae SP195]
 gi|306409645|gb|ADM85072.1| Thioredoxin reductase [Streptococcus pneumoniae AP200]
 gi|332072252|gb|EGI82735.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA17570]
 gi|332200020|gb|EGJ14093.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA47368]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|219848994|ref|YP_002463427.1| FAD dependent oxidoreductase [Chloroflexus aggregans DSM 9485]
 gi|219543253|gb|ACL24991.1| FAD dependent oxidoreductase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           YDVIV+GGGH G   A   AK G    ++  +   +G   C 
Sbjct: 6  DYDVIVVGGGHNGLTCAGYLAKAGKRVLVLERRP-IVGGAVCT 47


>gi|15903355|ref|NP_358905.1| thioredoxin reductase [Streptococcus pneumoniae R6]
 gi|116516912|ref|YP_816753.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae D39]
 gi|149011686|ref|ZP_01832882.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP19-BS75]
 gi|149019403|ref|ZP_01834765.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP23-BS72]
 gi|225857084|ref|YP_002738595.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae P1031]
 gi|15458956|gb|AAL00116.1| Thioredoxin reductase [Streptococcus pneumoniae R6]
 gi|116077488|gb|ABJ55208.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae D39]
 gi|147764117|gb|EDK71049.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP19-BS75]
 gi|147931273|gb|EDK82252.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          SP23-BS72]
 gi|225724391|gb|ACO20243.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae P1031]
 gi|301794482|emb|CBW36921.1| putative thioredoxin reductase [Streptococcus pneumoniae INV104]
 gi|332074210|gb|EGI84687.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA17545]
 gi|332200901|gb|EGJ14972.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae
          GA47901]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|15901308|ref|NP_345912.1| thioredoxin reductase [Streptococcus pneumoniae TIGR4]
 gi|111658099|ref|ZP_01408798.1| hypothetical protein SpneT_02000707 [Streptococcus pneumoniae
          TIGR4]
 gi|148990266|ref|ZP_01821477.1| thioredoxin reductase [Streptococcus pneumoniae SP6-BS73]
 gi|149002853|ref|ZP_01827779.1| thioredoxin reductase [Streptococcus pneumoniae SP14-BS69]
 gi|194398705|ref|YP_002038091.1| thioredoxin reductase [Streptococcus pneumoniae G54]
 gi|221232183|ref|YP_002511336.1| thioredoxin reductase [Streptococcus pneumoniae ATCC 700669]
 gi|225854899|ref|YP_002736411.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae JJA]
 gi|237649581|ref|ZP_04523833.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae CCRI
          1974]
 gi|14972947|gb|AAK75552.1| thioredoxin reductase [Streptococcus pneumoniae TIGR4]
 gi|147759147|gb|EDK66141.1| thioredoxin reductase [Streptococcus pneumoniae SP14-BS69]
 gi|147924405|gb|EDK75495.1| thioredoxin reductase [Streptococcus pneumoniae SP6-BS73]
 gi|194358372|gb|ACF56820.1| thioredoxin reductase [Streptococcus pneumoniae G54]
 gi|220674644|emb|CAR69213.1| putative thioredoxin reductase [Streptococcus pneumoniae ATCC
          700669]
 gi|225722650|gb|ACO18503.1| thioredoxin-disulfide reductase [Streptococcus pneumoniae JJA]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVALI 30


>gi|76802718|ref|YP_330813.1| electron-transferring-flavoprotein dehydrogenase 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76558583|emb|CAI50175.1| predicted electron-transferring-flavoprotein dehydrogenase 1
           [Natronomonas pharaonis DSM 2160]
          Length = 456

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 51/168 (30%), Gaps = 16/168 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLG---KG 56
           M    YDV ++G G AGC A A  A  G    ++  K     G ++C  A+ G     + 
Sbjct: 1   MTTFEYDVAIVGAGTAGCYAGATIADAGYDVVIVDRKDAEEAGHIACGDALKGADTFPEA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVL--NVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
               EI++         D    QF +   +V     + G     DR  Y   +       
Sbjct: 61  IPKSEIES----SFTNTDVDHGQFEIPQEDVSLDIPIPGELAVIDRWEYGRQLIDAAED- 115

Query: 115 ENLDVIQGEVAG--FNTEKNIISS---IVMQDNSMIRCSTVVLTTGTF 157
              +     V       +   +     I   D        V+   G  
Sbjct: 116 AGTEFHYDTVVQDVLQDDDGRVYGFSAIKKGDPRTYEAEIVLDGAGAL 163


>gi|121605568|ref|YP_982897.1| FAD dependent oxidoreductase [Polaromonas naphthalenivorans CJ2]
 gi|120594537|gb|ABM37976.1| FAD dependent oxidoreductase [Polaromonas naphthalenivorans CJ2]
          Length = 443

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  +D I+IG G AG  AA + A+ G S AL+
Sbjct: 1  MNTGFDAIIIGAGPAGSTAAILLARAGWSVALV 33


>gi|320581396|gb|EFW95617.1| Squalene epoxidase [Pichia angusta DL-1]
          Length = 482

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            L++ N+  ++G V     E + +  + +      R   V+   G + +    + + K P
Sbjct: 147 CLAEPNVTKVEGNVTDLIREDDRVVGVKVAGKDEYRAKLVICCDGIYSKFRKELYQDKQP 206


>gi|302553441|ref|ZP_07305783.1| conserved hypothetical protein [Streptomyces viridochromogenes
          DSM 40736]
 gi|302471059|gb|EFL34152.1| conserved hypothetical protein [Streptomyces viridochromogenes
          DSM 40736]
          Length = 934

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ GA   L+
Sbjct: 23 DVLVIGGGTAGTMAALTAAEHGADVLLL 50


>gi|118618343|ref|YP_906675.1| dehydrogenase [Mycobacterium ulcerans Agy99]
 gi|118570453|gb|ABL05204.1| dehydrogenase [Mycobacterium ulcerans Agy99]
          Length = 526

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD IV+G GH G  AAAV  + G  T  +   T
Sbjct: 3  DYDAIVVGAGHNGLTAAAVLQRAGLRTLCMEANT 36


>gi|110004305|emb|CAK98643.1| probable dihydrolipoyl dehydrogenase component e3 of pyruvate
           dehydrogenase transmembrane protein [Spiroplasma citri]
          Length = 460

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 15/159 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDVI++G G  G   A  AA+ G  T +                +G +    L++ 
Sbjct: 1   MENKYDVIIVGAGPGGYVTAIKAAQEGLKTLI----IEKEYYGGVCLNVGCIPTKALLKS 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN-LDVI 120
               D  M + AD  GI   V      P     + +  + + +L    E L ++N +D+I
Sbjct: 57  SKVYD--MMKHADNYGI--DVAKAAVAPNWVKMQERKAKVVTQLTKGVEFLLKKNKVDLI 112

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +GE    +     ++           C+ +++ TG+  R
Sbjct: 113 KGEAKAIDKNTVEVAG------KRYLCANLIIATGSVSR 145


>gi|332295303|ref|YP_004437226.1| geranylgeranyl reductase [Thermodesulfobium narugense DSM 14796]
 gi|332178406|gb|AEE14095.1| geranylgeranyl reductase [Thermodesulfobium narugense DSM 14796]
          Length = 366

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DVI+ G G AG  AA + AK G   ALI
Sbjct: 7  EFDVIICGAGPAGSTAAFLLAKKGLRVALI 36


>gi|324999470|ref|ZP_08120582.1| dehydrogenase [Pseudonocardia sp. P1]
          Length = 562

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          RS DV+V+G GH G  AAA  A+ G    ++    +  G  S NP +     G+ + E  
Sbjct: 10 RSADVVVVGSGHNGLVAAAYLARSGLDVCVVEASPTAGGMTSTNP-MEPEAPGYTINEAS 68

Query: 64 ALDGL 68
              L
Sbjct: 69 IQASL 73


>gi|303246942|ref|ZP_07333218.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
 gi|302491649|gb|EFL51532.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
          Length = 435

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 31/189 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-L 65
           DVIVIGGG AG   A   A+ G    L        G        GG+    ++ ++    
Sbjct: 11  DVIVIGGGVAGTVCAHQLAQAGKQVIL----IERGGQPGAKNLSGGIFYCRVMEQVFPDF 66

Query: 66  DGLMGRVADAAGIQFRVLNVKK--------------GPAVRGPRTQADRELYRLAMQREI 111
            G               LN                   AV   R + D  L        +
Sbjct: 67  VGEAPVERRITRNVLSFLNPTSHFNVDYWDQRLGDPVNAVTVLRAKLDAWLAEQCENAGV 126

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           +    +      V     E   +  +       +    VV   G      ++    +   
Sbjct: 127 MVMPGIR-----VDSLLFENGQVVGVK-AGEDELHAHVVVAADG------VNSFIAQQAG 174

Query: 172 GRMGDSPSN 180
            R  +   N
Sbjct: 175 IRAKEPAQN 183


>gi|297153630|gb|ADI03342.1| hypothetical protein SBI_00221 [Streptomyces bingchenggensis
          BCW-1]
          Length = 498

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG AG  AA    KLG    L+      +G M+ +  IG   + H V    A  G
Sbjct: 4  VTVIGGGLAGMTAAWTIRKLGVPVRLLEAAPE-LGGMAGSRVIGNRVEDHGVHIFPAWYG 62

Query: 68 LMGRVADA 75
             R+ + 
Sbjct: 63 NALRLVEE 70


>gi|262403789|ref|ZP_06080347.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          sp. RC586]
 gi|262350293|gb|EEY99428.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          sp. RC586]
          Length = 438

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G LV
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSLV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DAL  L  +  +    +    N +KG
Sbjct: 59 NQPFDALSALQQQAPEHPYSKVGRKNSEKG 88


>gi|226361272|ref|YP_002779050.1| dihydrolipoamide dehydrogenase [Rhodococcus opacus B4]
 gi|226239757|dbj|BAH50105.1| dihydrolipoamide dehydrogenase [Rhodococcus opacus B4]
          Length = 467

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG STA+I  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAIIEQKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          HL  +   L G+ G  +   G  F
Sbjct: 61 HLFTKEAKLFGISGEASFDFGAAF 84


>gi|254514203|ref|ZP_05126264.1| dihydrolipoyl dehydrogenase [gamma proteobacterium NOR5-3]
 gi|219676446|gb|EED32811.1| dihydrolipoyl dehydrogenase [gamma proteobacterium NOR5-3]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          M+  S+DV+VIG G AG   A  AA+LG STA++   T   G+ 
Sbjct: 1  MMADSFDVVVIGSGPAGYVGAIRAAQLGLSTAVVEEWTDEKGAA 44


>gi|114778872|ref|ZP_01453671.1| dihydrolipoamide dehydrogenase [Mariprofundus ferrooxydans PV-1]
 gi|114550907|gb|EAU53472.1| dihydrolipoamide dehydrogenase [Mariprofundus ferrooxydans PV-1]
          Length = 609

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 13/161 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  YDV+VIG G  G  AA  AA+LG  TA I  TH      +  C P    L    LV 
Sbjct: 146 DGEYDVVVIGAGPGGYVAAIRAAQLGLKTACIESTHLGGICLNWGCIPTKALLRTAELVN 205

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            ++     +G    A        ++ K  AV   R  +D+    +     +  +  +D I
Sbjct: 206 VVNHQGDELGLGITAT-----TPDITK--AVSRSRKISDKLNKGIGF---LFKKNKIDHI 255

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            G        K ++     +  S +    V++ TG   R  
Sbjct: 256 DGYATFEAGNKLMVKGADGKT-SQVTAKHVIVATGARARAF 295


>gi|330999936|ref|ZP_08323634.1| dihydrolipoyl dehydrogenase [Parasutterella excrementihominis YIT
           11859]
 gi|329573343|gb|EGG54955.1| dihydrolipoyl dehydrogenase [Parasutterella excrementihominis YIT
           11859]
          Length = 477

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTS---TIGSMSCNPAIGGLGK 55
           +++DV+VIG G  G  +A  AA+LG +   I       K +   T  ++ C P+   L  
Sbjct: 6   QTFDVVVIGAGPGGYVSAIRAAQLGLTVCCIDDWVTDGKPAPGGTCTNVGCIPSKALLAS 65

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
             L  EI       G   +   I    +  +K    +  R   D  LY     +      
Sbjct: 66  SCLFEEIRDKASEHGIHVEEPTIDVPTMIARK---AKIVRQTNDGILYLFRKNKITF--- 119

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            L+     V     E   +  +  +D + +    VVL TG+
Sbjct: 120 -LNGRGFFVTS--DEDGYLIGVEGRDETRVFAKNVVLATGS 157


>gi|303257037|ref|ZP_07343051.1| dihydrolipoyl dehydrogenase [Burkholderiales bacterium 1_1_47]
 gi|302860528|gb|EFL83605.1| dihydrolipoyl dehydrogenase [Burkholderiales bacterium 1_1_47]
          Length = 477

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTS---TIGSMSCNPAIGGLGK 55
           +++DV+VIG G  G  +A  AA+LG +   I       K +   T  ++ C P+   L  
Sbjct: 6   QTFDVVVIGAGPGGYVSAIRAAQLGLTVCCIDDWVTDGKPAPGGTCTNVGCIPSKALLAS 65

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
             L  EI       G   +   I    +  +K    +  R   D  LY     +      
Sbjct: 66  SCLFEEIRDKASEHGIHVEEPTIDVPTMIARK---AKIVRQTNDGILYLFRKNKITF--- 119

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            L+     V     E   +  +  +D + +    VVL TG+
Sbjct: 120 -LNGRGFFVTS--DEDGYLIGVEGRDETRVFAKNVVLATGS 157


>gi|311744025|ref|ZP_07717831.1| L-aspartate oxidase [Aeromicrobium marinum DSM 15272]
 gi|311313155|gb|EFQ83066.1| L-aspartate oxidase [Aeromicrobium marinum DSM 15272]
          Length = 507

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 50/188 (26%), Gaps = 51/188 (27%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALIT--------------------HKTSTIGSMSCNP 48
           IV+G G AG   A  AA  G    L+                         +  S   + 
Sbjct: 5   IVVGSGVAGLTCALEAAAAGFEVTLLAKARLTESNTRYAQGGVAVALADVDSPASHLADT 64

Query: 49  AIGGLGKG-------------HLVREI-------DALDGLMGRVADAAGIQFRVLNVKKG 88
              G G G               + E+       D     +    +AA    R+L+    
Sbjct: 65  LAAGAGLGDPDTAGILCAEGPTAIHELIGRGVQFDRDGDDLAHGLEAAHSHPRILHAGGD 124

Query: 89  PAVRGPR-TQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147
               G      DR   R A    +            V     +   +  + + D   +R 
Sbjct: 125 ATGAGIAYALVDRV--RAAAVTILEET--------TVVDLVVDGERVVGVRLLDGRDLRA 174

Query: 148 STVVLTTG 155
             VVL TG
Sbjct: 175 DEVVLATG 182


>gi|288573889|ref|ZP_06392246.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
          [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569630|gb|EFC91187.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
          [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 537

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD++V+G G AG  AA   A++GA  ALI    
Sbjct: 25 YDLLVVGAGSAGLTAAVEGARMGARVALIESSL 57


>gi|242239207|ref|YP_002987388.1| NADH:flavin oxidoreductase/NADH oxidase [Dickeya dadantii Ech703]
 gi|242131264|gb|ACS85566.1| NADH:flavin oxidoreductase/NADH oxidase [Dickeya dadantii Ech703]
          Length = 666

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +V++IGGG AGCEAA VAA  G S  L   KT  +G
Sbjct: 406 NVLIIGGGPAGCEAARVAALRGHSVVLHE-KTDRLG 440


>gi|254477548|ref|ZP_05090934.1| Glycine cleavage T-protein (aminomethyl transferase) [Ruegeria sp.
           R11]
 gi|214031791|gb|EEB72626.1| Glycine cleavage T-protein (aminomethyl transferase) [Ruegeria sp.
           R11]
          Length = 973

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 20/125 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-----LVRE 61
           D++V+G G AG  AA  AA+ G    L     +  G +                   V E
Sbjct: 167 DLLVVGAGPAGLMAALTAARAGLDVILCDEDVTPGGRLQSERDTIADAPAQAWIDATVAE 226

Query: 62  IDALDGL--MGRVA-----DA-AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           +D+ D +  M R       D        ++    G A R          +RL  +R IL+
Sbjct: 227 LDSCDNVRRMARTTVTGVYDQGTYAALEMVPQSSGRAGRAC-------FWRLMAKRAILA 279

Query: 114 QENLD 118
              L+
Sbjct: 280 TGALE 284


>gi|67524301|ref|XP_660212.1| hypothetical protein AN2608.2 [Aspergillus nidulans FGSC A4]
 gi|40745557|gb|EAA64713.1| hypothetical protein AN2608.2 [Aspergillus nidulans FGSC A4]
 gi|259488047|tpe|CBF87194.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 508

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPAIGGLGKGHLVREID 63
           YDVIV+GGG+A   +A  A + GA  A+     +T   G+   +  I  +  G L     
Sbjct: 9   YDVIVVGGGNAALVSALSAYQAGARVAVFEAAPETEHGGNSRFSSGIFRIPHGGLSEVQT 68

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
            LDG +        +        +G   R  +   DR
Sbjct: 69  LLDGSVLDDVAHCRMASYTPEQYRGDIERTSKGHCDR 105


>gi|329769140|ref|ZP_08260561.1| hypothetical protein HMPREF0433_00325 [Gemella sanguinis M325]
 gi|328839486|gb|EGF89063.1| hypothetical protein HMPREF0433_00325 [Gemella sanguinis M325]
          Length = 585

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDV V+GGG AG  AA  AA+LG   AL+
Sbjct: 123 EYDVAVVGGGPAGYVAAIKAAQLGGKVALV 152


>gi|311695136|gb|ADP98009.1| soluble pyridine nucleotide transhydrogenase [marine bacterium
          HP15]
          Length = 463

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    YDV+VIG G +G  AA  A K G   A+I  K +  G+ +    I      H V+
Sbjct: 1  MAEHHYDVVVIGAGPSGEGAAMNATKHGKRVAIIEDKPTVGGNCTHWGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|149376573|ref|ZP_01894333.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component, and related enzyme
          [Marinobacter algicola DG893]
 gi|149359091|gb|EDM47555.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component, and related enzyme
          [Marinobacter algicola DG893]
          Length = 463

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    YDV+VIG G +G  AA  A K G   A+I  K +  G+ +    I      H V+
Sbjct: 1  MAEHHYDVVVIGAGPSGEGAAMNATKHGKRVAIIEDKPTVGGNCTHWGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|15789703|ref|NP_279527.1| hypothetical protein VNG0468C [Halobacterium sp. NRC-1]
 gi|169235417|ref|YP_001688617.1| oxidoreductase (geranylgeranyl hydrogenase homolog) [Halobacterium
           salinarum R1]
 gi|10580073|gb|AAG19007.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726483|emb|CAP13268.1| oxidoreductase (geranylgeranyl hydrogenase homolog) [Halobacterium
           salinarum R1]
          Length = 410

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 10/185 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVIV G G AG + A   A+ G    ++  +         N +  G     ++  
Sbjct: 1   MSDKHDVIVAGAGPAGAQCARDLAERGYDVVVLEAEPEDEFPRQSNKSTAGTFAS-MMGA 59

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
               D ++ +  D   ++       +      P    +   ++  +      Q      +
Sbjct: 60  FGVPDDVVMQYTDDVVLES----PHEYFVQDQPGAVLEFAEFKQWLVAAGEQQGAEYRFE 115

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL-----RGVIHIGKLKIPAGRMGD 176
             V    TE   I  +    +  +    ++  TG         GV  + +     G   +
Sbjct: 116 ARVNNPITEGGEIVGVKYDGDEEVYGDIIIDATGPAAPLAKKLGVTDLRRSNQAIGIEWE 175

Query: 177 SPSNS 181
             + +
Sbjct: 176 MENVA 180


>gi|304316811|ref|YP_003851956.1| HI0933 family protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778313|gb|ADL68872.1| HI0933 family protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 405

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 147/433 (33%), Gaps = 82/433 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR------- 60
           V VIG G AG  AA +++  G    +                I G G+ ++         
Sbjct: 4   VFVIGCGAAGMMAALMSSIKGNKVTIF----EKNDRPGKKLLITGKGRCNVTNTATIKEF 59

Query: 61  -EIDALDG-----LMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
            E    +G      + R +++  I+F   N       RG R    +DR    L +  +++
Sbjct: 60  IENTPTNGKFLYSALNRFSNSDLIEFLNKNGLMTKVERGGRVFPVSDRSKDVLDVLLKLI 119

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               +D+     V    ++ + +  IV+ +     C +++L+TG                
Sbjct: 120 KANGIDIHYNARVTDILSDSSRVLGIVV-NGKKEYCDSIILSTGGL------SYPSTGST 172

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR---------LDGK-TIIWDKTEKQFADE 221
           G   D     L ++ +          T              ++ K  +     +++F + 
Sbjct: 173 GDGYDMAKK-LGHTIIDLHPALVPFVTAEDVSGMMGLSLKNINAKLYVNDKFIKEEFGEM 231

Query: 222 RLIPF----------SFMTDKITNRQIECGITRTNLETHRIIMENIKH------SAIYSG 265
               F          S     I    +   +      T+  + + I+          +  
Sbjct: 232 LFTHFGLSGPVILTLSSYIKNINKSNVVIKLDLKPALTYEKLNDRIQRDFKKYLKKEFKN 291

Query: 266 DIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRT 325
            +    PR   S+   +++       Q  + P+   ++V        AL   ++      
Sbjct: 292 SLNDLLPR---SLTPYVIK-------QSGINPDKKVSEVSKLER--NALVHALKELVFHV 339

Query: 326 I--PGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTT----GY--E 376
           I    +++  I   G       ++ KE+ P T+E++ I GLF AG+I        GY  +
Sbjct: 340 ISKRPIKEAIITSGG-------VSTKEINPKTMESRLIKGLFFAGEIIDVDALTGGYNLQ 392

Query: 377 EAAAQGLVAGINS 389
            + + G +AGINS
Sbjct: 393 ISFSTGYLAGINS 405


>gi|222150765|ref|YP_002559918.1| thioredoxin reductase [Macrococcus caseolyticus JCSC5402]
 gi|222119887|dbj|BAH17222.1| thioredoxin reductase [Macrococcus caseolyticus JCSC5402]
          Length = 309

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVI++G G AG  AA  A++   ST +I
Sbjct: 5  KEYDVIIVGAGPAGMTAAVYASRANLSTIMI 35


>gi|116334009|ref|YP_795536.1| dihydrolipoamide dehydrogenase [Lactobacillus brevis ATCC 367]
 gi|116099356|gb|ABJ64505.1| dihydrolipoamide dehydrogenase [Lactobacillus brevis ATCC 367]
          Length = 475

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVREI 62
           D ++IG G  G  AA  A++LG    LI  K+ T+G    ++ C P+   +  GH + E 
Sbjct: 8   DTVIIGAGPGGYVAAIRASELGQKVTLIE-KSDTLGGVCLNVGCVPSKALIQAGHRL-EQ 65

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                  G   D+A I F      K       +   DR     +  + ++ + ++DV+ G
Sbjct: 66  AKDGSTYGISTDSATIDF------KKTQEWKQKKVVDR---MTSGVKMLMKKHHVDVVSG 116

Query: 123 EVAGFNTEKNII--SSIV----MQDNSMIRCSTVVLTTGTF 157
           E    +  +  +  +                + +++ +G+ 
Sbjct: 117 EAVFLSDTQLRVMPTGEKQFMSTDTGQTFEFNNIIIASGSH 157


>gi|145595171|ref|YP_001159468.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Salinispora tropica CNB-440]
 gi|145304508|gb|ABP55090.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Salinispora tropica CNB-440]
          Length = 306

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 43/151 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVIV+GGG AG  AA V+ +      ++                               
Sbjct: 2   YDVIVVGGGPAGLNAALVSGRQRRRVLVVD------------------------------ 31

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
               G   +A   +  +   + G +    R            + E+ +  ++++  G+V 
Sbjct: 32  ---SGSPRNAPASEMHMFLSRDGFSPAELR---------KVGREELSAYPSVELRMGQVD 79

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                ++  + + +      R   +VL TG 
Sbjct: 80  SVMRTEHGFT-VALAGGDTHRTRKLVLATGQ 109


>gi|54025060|ref|YP_119302.1| hypothetical protein nfa30910 [Nocardia farcinica IFM 10152]
 gi|54016568|dbj|BAD57938.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 495

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD IV+G G+AG  AAA   + GA T L+
Sbjct: 3  DYDAIVVGAGNAGLTAAATLQRAGARTLLL 32


>gi|83951308|ref|ZP_00960040.1| glutathione-disulfide reductase [Roseovarius nubinhibens ISM]
 gi|83836314|gb|EAP75611.1| glutathione-disulfide reductase [Roseovarius nubinhibens ISM]
          Length = 452

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M++  YD+ VIGGG  G  AA VAA+ GA  AL
Sbjct: 1  MMSFDYDLFVIGGGSGGVRAARVAAQTGAKVAL 33


>gi|330835595|ref|YP_004410323.1| FAD dependent oxidoreductase [Metallosphaera cuprina Ar-4]
 gi|329567734|gb|AEB95839.1| FAD dependent oxidoreductase [Metallosphaera cuprina Ar-4]
          Length = 400

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++   DVIV+GGG AG  AA  A + G ST ++
Sbjct: 1  MSYDADVIVVGGGLAGLSAAIQANREGLSTLVL 33


>gi|257792271|ref|YP_003182877.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257476168|gb|ACV56488.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
          Length = 555

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            ++YD++V+G G AG  A   A + GA+ A         G++  N   G    G ++ E 
Sbjct: 70  EKTYDIVVVGAGTAGVPAVYSALEEGATVAC----LQREGTVQAN---GNGSSGIILEES 122

Query: 63  DALDGLMGRVADAAGIQFRV 82
           +    L    A      +R+
Sbjct: 123 NEAGILQYMQAWRKAGGYRM 142


>gi|121607209|ref|YP_995016.1| BFD/(2Fe-2S)-binding domain-containing protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121551849|gb|ABM55998.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 488

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + +SYD++V+G G AG  AA  AA+ G    L+    
Sbjct: 10 LAQSYDLVVVGAGPAGLSAATTAAQHGLDVLLVDENP 46


>gi|17231429|ref|NP_487977.1| mercuric reductase [Nostoc sp. PCC 7120]
 gi|17133071|dbj|BAB75636.1| mercuric reductase [Nostoc sp. PCC 7120]
          Length = 489

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          +   YDV++IGG  AG  AA  A ++GA  AL+  + + 
Sbjct: 1  MTIDYDVVIIGGSLAGRYAALTATQMGAKVALVESQLNN 39


>gi|86138166|ref|ZP_01056741.1| hypothetical protein MED193_01525 [Roseobacter sp. MED193]
 gi|85825193|gb|EAQ45393.1| hypothetical protein MED193_01525 [Roseobacter sp. MED193]
          Length = 424

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D++VIGGG+ GC AA  AA++GAS  LI
Sbjct: 30 DLVVIGGGYTGCSAALKAAEMGASVCLI 57


>gi|307720475|ref|YP_003891615.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Sulfurimonas autotrophica DSM 16294]
 gi|306978568|gb|ADN08603.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Sulfurimonas autotrophica DSM 16294]
          Length = 445

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 21/44 (47%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          + YDV++IG G  G E A   A  G  T LI      IG +  N
Sbjct: 2  KEYDVVIIGAGPGGYETALKVAASGKKTLLIDRAKENIGGICLN 45


>gi|229495123|ref|ZP_04388869.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
 gi|229318054|gb|EEN83929.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
          Length = 505

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 2   INRSYDVIVIGGGHAGCE--AAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGH 57
           +   +DVIVIGGG AG E  AA   A    + A++ H+         +C P+   L  G 
Sbjct: 37  MTDEFDVIVIGGGPAG-ENAAAYAIAGSNRTAAIVEHELVGGECSYWACMPSKALLRPGQ 95

Query: 58  LVREIDALDGL 68
           ++   DAL G+
Sbjct: 96  VLEAADALPGI 106


>gi|86750315|ref|YP_486811.1| HI0933-like protein [Rhodopseudomonas palustris HaA2]
 gi|86573343|gb|ABD07900.1| HI0933-like protein [Rhodopseudomonas palustris HaA2]
          Length = 410

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D  VIG G AG  AA   A+ GA   +       + S +    + G G  +L       D
Sbjct: 8  DAAVIGAGPAGLMAAEQLAQAGARVVVF----DGMSSGARKFLLAGRGGLNLTHSEPLPD 63

Query: 67 GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
               +A     Q R+    +  A    R  A+
Sbjct: 64 ----FLARYGAAQARLTPAIEAFAPDALRAWAE 92


>gi|256824034|ref|YP_003147994.1| 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
           [Kytococcus sedentarius DSM 20547]
 gi|256687427|gb|ACV05229.1| 2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
           [Kytococcus sedentarius DSM 20547]
          Length = 378

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--------CNPAIGGLG---K 55
           DVIVIGGG AG   A   A+ G +  ++  +   I  +            A+G LG   +
Sbjct: 2   DVIVIGGGIAGLATAVGLARAGRAVTVLE-RRERIEELGAGVILWPNALRALGELGLREQ 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            H V E++A+ G         G     L+ ++  A  G      R    + +  E   + 
Sbjct: 61  VHGVAELEAVGG----FRRPDGTWLNRLDGRRFSAAHGEVAAIHRGD-LIDLLHEAAVEA 115

Query: 116 NLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             ++  G  VA    +    + +VM+D   +    V+   G
Sbjct: 116 GAEIRCGQAVAAVEPDPGGGAIVVMEDGRRVSAELVIGADG 156


>gi|254173195|ref|ZP_04879868.1| proline dehydrogenase, alpha subunit [Thermococcus sp. AM4]
 gi|214032604|gb|EEB73433.1| proline dehydrogenase, alpha subunit [Thermococcus sp. AM4]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           D+IVIGGG AG  AA  A++ GA   LI
Sbjct: 118 DIIVIGGGPAGLMAAIHASRAGAKVVLI 145


>gi|167771595|ref|ZP_02443648.1| hypothetical protein ANACOL_02967 [Anaerotruncus colihominis DSM
          17241]
 gi|167666235|gb|EDS10365.1| hypothetical protein ANACOL_02967 [Anaerotruncus colihominis DSM
          17241]
          Length = 542

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI+    YDV+VIGGG AG  AA   A+      ++
Sbjct: 1  MIDTKQLYDVVVIGGGPAGLTAALYLARARYRVLVV 36


>gi|145235219|ref|XP_001390258.1| squalene epoxidase [Aspergillus niger CBS 513.88]
 gi|134057939|emb|CAK47816.1| unnamed protein product [Aspergillus niger]
          Length = 512

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNP----AIGGL 53
           +I+   DV+++G G  GC  A    + G S  L+         I      P    A+  L
Sbjct: 56  LIHHHADVVIVGAGILGCALAVALGRQGRSVLLLEASMKEPDRIVGELLQPGGVEALEKL 115

Query: 54  GKGHLVREIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           G    + +IDA+   G                     PA +G      R  + + ++   
Sbjct: 116 GLADCLEDIDAIPAKGYHVTYFGKPVSFTYPKASPSSPAPQGRCFHHGR--FVMKLRAAA 173

Query: 112 LSQENLDVIQGEVAGFNTEKNI--ISSIVMQDNSMIRC 147
           L+  N+ V++ +     T  +   +  +      M  C
Sbjct: 174 LACPNVTVVETKATDLVTCSHTKQVLGVECVTGDMKDC 211


>gi|85057419|ref|YP_456335.1| dihydrolipoamide dehydrogenase [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84789524|gb|ABC65256.1| dihydrolipoamide dehydrogenase [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 457

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIG-SMSCNPA 49
          ++YDV+VIGGG  G  AA  AA++GA  AL+  HK   I  +  C P 
Sbjct: 2  KNYDVLVIGGGPGGYVAAIKAAQIGAKVALVEKHKLGGICLNYGCIPT 49


>gi|82701984|ref|YP_411550.1| dihydrolipoamide dehydrogenase [Nitrosospira multiformis ATCC
          25196]
 gi|82410049|gb|ABB74158.1| dihydrolipoamide dehydrogenase [Nitrosospira multiformis ATCC
          25196]
          Length = 483

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++S+DV VIG G  G  AA   A+LG  T           +    P++GG 
Sbjct: 1  MSQSFDVAVIGAGPGGYVAAIRCAQLGLKTVC----IDEWKNPQDKPSLGGT 48


>gi|73993070|dbj|BAE43548.1| putative lycopene beta cyclase [Taxodium distichum var. distichum]
          Length = 525

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 25/193 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E +  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGR 195
                +  FD  +
Sbjct: 270 AEVD-EHPFDVDK 281


>gi|27381937|ref|NP_773466.1| oxidoreductase [Bradyrhizobium japonicum USDA 110]
 gi|27355107|dbj|BAC52091.1| bll6826 [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 8/146 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG G+ G  AA   AK G S  ++       G+   N  +         REIDA+ 
Sbjct: 39  DVVVIGAGYTGLSAAHHIAKSGLSPIVLEANRPGWGASGRNGGVITAKFRLSFREIDAVH 98

Query: 67  G-----LMGRVADAAGIQFRVLNVKKGPAVRGP-RTQADRELYRLAMQREILSQENLDVI 120
           G      M  +A  +      L  + G +     R    +  +     R  + + N    
Sbjct: 99  GRAMARRMYEIAHESTDIVEELVSEFGISSAALTRAGQVKAAHNETTLRAAIDEANWMTR 158

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIR 146
             E+            +  +  S I 
Sbjct: 159 --EMGDVEVRILDKRGVREETGSDIF 182


>gi|323142035|ref|ZP_08076883.1| pyridine nucleotide-disulfide oxidoreductase
          [Phascolarctobacterium sp. YIT 12067]
 gi|322413422|gb|EFY04293.1| pyridine nucleotide-disulfide oxidoreductase
          [Phascolarctobacterium sp. YIT 12067]
          Length = 294

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          M N     I+IGGG AG  AA   A+ G    +I +    +          G+   
Sbjct: 1  MTNNIKQAIIIGGGPAGVSAALYLARAGQKVCIIENGPGALAKAHKIDNYYGIAAS 56


>gi|312138569|ref|YP_004005905.1| dihydrolipoyl dehydrogenase [Rhodococcus equi 103S]
 gi|311887908|emb|CBH47220.1| putative dihydrolipoyl dehydrogenase [Rhodococcus equi 103S]
          Length = 483

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 52/172 (30%), Gaps = 38/172 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIVIGGG AG E AA  A                        I G  +   + 
Sbjct: 1   MAPEDFDVIVIGGGPAG-ENAAAYA------------------------IAGSDRTAALV 35

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----QEN 116
           E + + G     A              G A   P  +     Y L  +  +        N
Sbjct: 36  EHELVGGECSYWACMPSKALLRPVEVLGTARHMPGVEEKVNAYGLDTEAVLARRDGFTHN 95

Query: 117 LD-----VIQGEV-AGFNTEKNIISSI--VMQDNSMIRCS-TVVLTTGTFLR 159
           LD     +    V          I+ +  V   + ++R    VVL TGT   
Sbjct: 96  LDDSSQVLWADSVGIDVIRGTARITGVREVTVGDRVLRARHAVVLATGTRAS 147


>gi|220923316|ref|YP_002498618.1| NADH:flavin oxidoreductase/NADH oxidase [Methylobacterium nodulans
           ORS 2060]
 gi|219947923|gb|ACL58315.1| NADH:flavin oxidoreductase/NADH oxidase [Methylobacterium nodulans
           ORS 2060]
          Length = 680

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA VAA+ G S  L    
Sbjct: 392 VVVVGAGPAGLEAARVAAERGHSVVLFEKN 421


>gi|73993092|dbj|BAE43559.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D
Sbjct: 110 DLVVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMD 160

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    V +  K     P  R  R    R+L    M++ I +   +   + 
Sbjct: 161 LLDCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRA 214

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E++  S ++  D   ++ S V+  TG F R ++   K   P           L
Sbjct: 215 KVKQVVHEESK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGIL 269

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 270 AEVD-EHPFDVDKM 282


>gi|307321712|ref|ZP_07601101.1| Thioredoxin-disulfide reductase [Sinorhizobium meliloti AK83]
 gi|306892609|gb|EFN23406.1| Thioredoxin-disulfide reductase [Sinorhizobium meliloti AK83]
          Length = 124

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKGHLVREI 62
          V++IG G AGC AA  AA+  +   L+T      + +T   +   P      +G L+ E 
Sbjct: 8  VLIIGAGPAGCTAAIYAARANSKPLLVTGRRAGGQLTTTAYVENFPGFAEPVEGPLLVEQ 67


>gi|294853696|ref|ZP_06794368.1| hydroxyacylglutathione hydrolase [Brucella sp. NVSL 07-0026]
 gi|294819351|gb|EFG36351.1| hydroxyacylglutathione hydrolase [Brucella sp. NVSL 07-0026]
          Length = 442

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 70/247 (28%), Gaps = 28/247 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           I+IGGG +G   AA   +    A+  +        G +    A       HL   ++   
Sbjct: 5   IIIGGGASGVIIAAQLLRRAQDATVRIF----EKSGRLGAGIAYSTGNPSHL---LNVRA 57

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ-----REILSQENLDVIQ 121
           G M    D        L           ++ A R LYR  +        +     L V +
Sbjct: 58  GNMSAFPDEPEHFVNWLRTTDEGGGWDAQSFAPRRLYRDYLAGLLQPYHLEVHPRLFVEK 117

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI---HIGKLKIPAGRMG--- 175
            E A    E      +V    +      ++L TG          H+ +     G      
Sbjct: 118 VEAADIVLEDGKPV-VVAAAGTRFSADAIILATGNEASIATPGKHVAEYWSSNGYFNIPI 176

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT----IIWDKTEKQF---ADERLIPFSF 228
           D+P           D     L  G  A +   +    +       Q      E L P S 
Sbjct: 177 DAPVAIFGTGLSMIDSVLSLLDNGHKAEIFAISRRGLVPVRHLGGQPMQIGAEELTPASS 236

Query: 229 MTDKITN 235
           +   + +
Sbjct: 237 LPSLVQH 243


>gi|226357084|ref|YP_002786824.1| dihydrolipoamide dehydrogenase [Deinococcus deserti VCD115]
 gi|226319074|gb|ACO47070.1| putative dihydrolipoyl dehydrogenase (E3 component of
           alpha-ketoacid dehydrogenase complexes) [Deinococcus
           deserti VCD115]
          Length = 468

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 30/170 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSM-------SCNPAIGGLGKG 56
           S+DV+VIGGG AG  AA  AA+LG STA +   +     S+        C P+   L   
Sbjct: 3   SFDVLVIGGGPAGYVAAIRAAQLGFSTACVDAFERDGKASLGGTCLNVGCIPSKAMLDSS 62

Query: 57  ----HLVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
                +  E       + G   D A    R+L+ K G   +     A   L++    +  
Sbjct: 63  EKFEMITHEAAEHGIDVQGASVDVA----RMLSRKAGVVDKLTGGIA--YLFKKNKVKSF 116

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                L V Q        +      +V    + +R   V++ TG+  R +
Sbjct: 117 FGLGRL-VRQD------GDGW----VVDAAGTEVRAKHVIVATGSNPRAL 155


>gi|226309099|ref|YP_002769059.1| hypothetical protein RER_56120 [Rhodococcus erythropolis PR4]
 gi|226188216|dbj|BAH36320.1| hypothetical protein RER_56120 [Rhodococcus erythropolis PR4]
          Length = 426

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 10/192 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREI 62
            +YDV+++G   AGC AA + A+ G   AL+  ++      + C   +   G   L R  
Sbjct: 7   ENYDVVIVGASIAGCAAAIMYAQQGLRIALLDARSDIRAHKVLCTHHLQPCGAPILQRLG 66

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                L   M          + ++          P     RE     +++     +N+D+
Sbjct: 67  ATEKLLALGMVETVPKFWTPWGMITPDAAENSPPPGFNVRRETLDPLLRQLANDYQNVDL 126

Query: 120 IQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI-----HIGKLKIPAGR 173
           + G  V+G  T+    + +   +          LT G   +            +    GR
Sbjct: 127 LLGHRVSGLLTKNGTTAGVYGTEQGSAFTVEARLTVGADGKDSTVARSARCDSVSASNGR 186

Query: 174 MGDSPSNSLFNS 185
                  S    
Sbjct: 187 FSYFAQLSGLER 198


>gi|254477430|ref|ZP_05090816.1| sarcosine oxidase, alpha subunit family [Ruegeria sp. R11]
 gi|214031673|gb|EEB72508.1| sarcosine oxidase, alpha subunit family [Ruegeria sp. R11]
          Length = 1010

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           DV+VIGGG AG +AA VAA+ GA   L+   
Sbjct: 172 DVLVIGGGVAGLQAAKVAAQSGAKVLLLEQH 202


>gi|330502569|ref|YP_004379438.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          mendocina NK-01]
 gi|328916855|gb|AEB57686.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          mendocina NK-01]
          Length = 464

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++ ++    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAVVDNRPLVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|302532459|ref|ZP_07284801.1| oxidoreductase/HEAT repeat-containing protein [Streptomyces sp.
          C]
 gi|302441354|gb|EFL13170.1| oxidoreductase/HEAT repeat-containing protein [Streptomyces sp.
          C]
          Length = 602

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA  GA   L+
Sbjct: 23 DVLVIGGGTAGTMAALTAAGRGADVLLL 50


>gi|290474777|ref|YP_003467657.1| putative choline dehydrogenase, a flavoprotein [Xenorhabdus
          bovienii SS-2004]
 gi|289174090|emb|CBJ80877.1| putative choline dehydrogenase, a flavoprotein [Xenorhabdus
          bovienii SS-2004]
          Length = 549

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YD IV+GGG AGC AA+  ++ G  + L+
Sbjct: 1  MTKTYDYIVVGGGSAGCVAASRLSENGTKSVLL 33


>gi|226495535|ref|NP_001149835.1| LOC100283462 [Zea mays]
 gi|195634941|gb|ACG36939.1| sarcosine oxidase [Zea mays]
          Length = 415

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +DVIV+G G  G  AA  A+  GA   L+
Sbjct: 9  HGRFDVIVVGAGIMGSCAAYAASSRGARVLLL 40


>gi|295837129|ref|ZP_06824062.1| monooxygenase, FAD-binding [Streptomyces sp. SPB74]
 gi|197697239|gb|EDY44172.1| monooxygenase, FAD-binding [Streptomyces sp. SPB74]
          Length = 427

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 50/176 (28%), Gaps = 36/176 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   AK G    L+  KT+      C   +       L+       
Sbjct: 11  DVIVVGAGPAGSATAYHLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLI------- 62

Query: 67  GLMGRVADAAGIQFRV--LNVKKGPAVRGPRTQADREL------YRLAMQREILSQENLD 118
             MG          R   L +  G    G R Q D         Y L  +R+   ++   
Sbjct: 63  -AMGIDISEEAGWLRNKGLRIIAG----GNRLQLDWPELASFPDYGLVRKRDDFDEQLAR 117

Query: 119 VIQGEVAGF----------NTEKNIISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
             Q   A              E   I+ +  +              VV   G   R
Sbjct: 118 AAQKAGARLYERCNVGAPVTDESGRITGVHAKLGEEKTPVTFHAPLVVAADGNSTR 173


>gi|194708164|gb|ACF88166.1| unknown [Zea mays]
          Length = 413

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +DVIV+G G  G  AA  A+  GA   L+
Sbjct: 9  HGRFDVIVVGAGIMGSCAAYAASSRGARVLLL 40


>gi|194689192|gb|ACF78680.1| unknown [Zea mays]
 gi|194703952|gb|ACF86060.1| unknown [Zea mays]
 gi|194708538|gb|ACF88353.1| unknown [Zea mays]
          Length = 415

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +DVIV+G G  G  AA  A+  GA   L+
Sbjct: 9  HGRFDVIVVGAGIMGSCAAYAASSRGARVLLL 40


>gi|170017600|ref|YP_001728519.1| thioredoxin-disulfide reductase [Leuconostoc citreum KM20]
 gi|169804457|gb|ACA83075.1| Thioredoxin-disulfide reductase [Leuconostoc citreum KM20]
          Length = 322

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVI++G G AG  AA  A++   S  ++
Sbjct: 5  KRYDVIIVGAGPAGMTAATYASRANLSVLML 35


>gi|149278386|ref|ZP_01884523.1| dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase)
           [Pedobacter sp. BAL39]
 gi|149230756|gb|EDM36138.1| dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase)
           [Pedobacter sp. BAL39]
          Length = 462

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVR 60
           +YDVIVIG G  G  AA  A++LG  TA+I     ++G +     C P    L    +  
Sbjct: 2   NYDVIVIGSGPGGYVAAIRASQLGLKTAVIE--RESLGGICLNWGCIPTKALLKSAQVFE 59

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            I+       + A+A      V+   +G A    +             + ++ +  +DVI
Sbjct: 60  YINHAAEYGIKTAEAEADFAAVIKRSRGVADGMSKG-----------VQFLMKKNKIDVI 108

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            G     +  K  +             +++++ TG   R +
Sbjct: 109 MGTAKVKSGSKVEVKGA-DGSQKEYTATSIIVATGGRSREL 148


>gi|146306634|ref|YP_001187099.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          mendocina ymp]
 gi|166223482|sp|A4XSQ1|STHA_PSEMY RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|145574835|gb|ABP84367.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Pseudomonas mendocina ymp]
          Length = 464

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++ ++    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAVVDNRPLVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|227818886|ref|YP_002822857.1| opine oxidase subunit B [Sinorhizobium fredii NGR234]
 gi|36959146|gb|AAQ87571.1| Octopine dehydrogenase subunit B [Sinorhizobium fredii NGR234]
 gi|227337885|gb|ACP22104.1| opine oxidase subunit B [Sinorhizobium fredii NGR234]
          Length = 375

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIGGG  G   A   A+ G   A++
Sbjct: 2  DYDVIVIGGGLVGVSIAWGLARCGQRVAIV 31


>gi|327269326|ref|XP_003219445.1| PREDICTED: squalene monooxygenase-like [Anolis carolinensis]
          Length = 572

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 19/184 (10%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           ++  YD  +I++G G  G   AAV A+ G   A+I               +   G  + +
Sbjct: 116 LSSQYDPEIIIVGSGVLGSALAAVLARDGRKVAIIE--RDMKEPDRIVGELLQPGGCNAL 173

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG------PAVRGPRTQADRELYR----LAMQR 109
           +++   + + G                K       P+    R Q+ +  +     + +++
Sbjct: 174 KDLGLEEAVEGIDCHTINGYMVHDPQSKTEVEIPYPSTPDGRIQSGKAFHHGRFIMGLRK 233

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHI 164
             +++ N   I+G V     E + +  ++       D   +      +  G F +   + 
Sbjct: 234 AAMAEPNTKFIEGTVIQLLEEDDCVIGVLYKDKETGDTKELHAPLTFVADGLFSKFRKNF 293

Query: 165 GKLK 168
              K
Sbjct: 294 VSSK 297


>gi|241668614|ref|ZP_04756192.1| L-aspartate oxidase [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254877148|ref|ZP_05249858.1| L-aspartate oxidase [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254843169|gb|EET21583.1| L-aspartate oxidase [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 496

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI R +DV+++GGG AG  A    A+ G + ALI
Sbjct: 1  MITRKHDVVIVGGGLAGIVATIELAEHGLNVALI 34


>gi|226307931|ref|YP_002767891.1| oxidoreductase [Rhodococcus erythropolis PR4]
 gi|226187048|dbj|BAH35152.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
          Length = 497

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          +   +DVIVIGGG AG E AA  A  G++      +   +G      +C P+   L  G 
Sbjct: 29 MTDEFDVIVIGGGPAG-ENAAACAIAGSNRTAAIVEHELVGGECSYWACMPSKALLRPGQ 87

Query: 58 LVREIDALDGL 68
          ++   DAL G+
Sbjct: 88 VLEAADALPGI 98


>gi|254285771|ref|ZP_04960734.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae AM-19226]
 gi|150424268|gb|EDN16206.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae AM-19226]
          Length = 436

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G LV
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSLV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DAL  L  +V +    +    N +KG
Sbjct: 59 NQPFDALSALQQQVPEHPYSKVGRKNSEKG 88


>gi|319947063|ref|ZP_08021297.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           australis ATCC 700641]
 gi|319747111|gb|EFV99370.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           australis ATCC 700641]
          Length = 568

 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKVALV 141


>gi|296158677|ref|ZP_06841507.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1]
 gi|295891245|gb|EFG71033.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1]
          Length = 378

 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIVIGGG AGC  A   A+ G +  ++
Sbjct: 3  DVIVIGGGLAGCATAYYLARDGVAVTVL 30


>gi|255262141|ref|ZP_05341483.1| gamma-glutamylputrescine oxidoreductase [Thalassiobium sp. R2A62]
 gi|255104476|gb|EET47150.1| gamma-glutamylputrescine oxidoreductase [Thalassiobium sp. R2A62]
          Length = 434

 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G  G  A    A+ G    ++    +  G+   N    G G     + I+   
Sbjct: 38  DVCVVGAGFTGLMATLTLARAGRRVIVLDAHRAGFGASGRNGGQVGSGFNQSQQWIEKHQ 97

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRT 96
           G     A     Q     V++  A      
Sbjct: 98  GHDAAHALWGMSQAAKDLVRENCAAFAGDA 127


>gi|239929906|ref|ZP_04686859.1| ferredoxin reductase [Streptomyces ghanaensis ATCC 14672]
 gi|291438241|ref|ZP_06577631.1| NADH:ferredoxin reductase [Streptomyces ghanaensis ATCC 14672]
 gi|291341136|gb|EFE68092.1| NADH:ferredoxin reductase [Streptomyces ghanaensis ATCC 14672]
          Length = 405

 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV+VIG G  GCE AA A K+G    ++
Sbjct: 149 DVVVIGAGFIGCEVAATALKMGCRVTVV 176


>gi|116751344|ref|YP_848031.1| FAD dependent oxidoreductase [Syntrophobacter fumaroxidans MPOB]
 gi|116700408|gb|ABK19596.1| FAD dependent oxidoreductase [Syntrophobacter fumaroxidans MPOB]
          Length = 431

 Score = 43.8 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 37/149 (24%), Gaps = 15/149 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M       IV+G G AG  AA + A+ G    L+        +  C    GG    H + 
Sbjct: 1   MAEDKTTAIVVGAGPAGSTAAYLLAREGHEVILV----ERGTAPGCKNMYGGRMYSHALN 56

Query: 61  EI-----------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
            I             ++  +    D            +            R  +   +  
Sbjct: 57  RIIPEFWTEAPVERCVERELITFLDGERSVSVACRDSEWAGPGCHSFTLLRAEFDAWLAA 116

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIV 138
           +      L      V     E   +  I 
Sbjct: 117 KAEEAGALLACGIRVDDLVFENGRVVGIR 145


>gi|317506940|ref|ZP_07964711.1| flavin containing amine oxidoreductase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254762|gb|EFV14061.1| flavin containing amine oxidoreductase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 454

 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA-------IGGLGKGHLV 59
          DV+V+G G AG  AA    + G S  ++  +   +G  + N         +GG   G   
Sbjct: 9  DVVVVGAGLAGLTAARELVRAGRSVVVVEGR-DRVGGRTLNATVAGAHVDLGGTFVGPTQ 67

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKKG 88
          RE+ AL   +G  A     +   L   +G
Sbjct: 68 REVLALADELGLAASPTYDEGANLVRWRG 96


>gi|295395078|ref|ZP_06805287.1| dihydrolipoyl dehydrogenase [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294972026|gb|EFG47892.1| dihydrolipoyl dehydrogenase [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 466

 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N S+DVIVIG G  G  AA  AA+LG  TA+I
Sbjct: 5  NDSFDVIVIGAGPGGYVAAGRAAQLGLRTAVI 36


>gi|260574927|ref|ZP_05842929.1| geranylgeranyl reductase [Rhodobacter sp. SW2]
 gi|259022932|gb|EEW26226.1| geranylgeranyl reductase [Rhodobacter sp. SW2]
          Length = 399

 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREIDA 64
           YDV VIGGG +G  AA   A+ G   AL        G +  C    GG     L+ + + 
Sbjct: 3   YDVFVIGGGPSGSTAAEDIARAGRKVAL----LDRDGRIKPC----GGAIPPRLIADFNI 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
            D  +      A +          P   G     DR+ Y   ++  
Sbjct: 55  PDSQIVAKITTARMISPTGRAVDIPIENGYVGMVDRDKYDEFLRNR 100


>gi|167628076|ref|YP_001678576.1| L-aspartate oxidase [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
 gi|167598077|gb|ABZ88075.1| L-aspartate oxidase [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
          Length = 496

 Score = 43.8 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI R +DV+++GGG AG  A    A+ G + ALI
Sbjct: 1  MITRKHDVVIVGGGLAGIVATIELAEHGLNVALI 34


>gi|325838910|ref|ZP_08166716.1| thioredoxin-disulfide reductase [Turicibacter sp. HGF1]
 gi|325490651|gb|EGC92962.1| thioredoxin-disulfide reductase [Turicibacter sp. HGF1]
          Length = 309

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 46/157 (29%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDV +IG G AG  AA  AA+   S  +I                          E
Sbjct: 1   MEKVYDVAIIGAGPAGMTAAIYAARASLSVVMI--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL--SQENLDV 119
             A  G M          F + N      + GP        +  A   E      EN+ +
Sbjct: 35  RGAPGGQMV-------NTFEIENYTGFEKISGPDLSMKMFEHSQAAGAEYAYGYVENVTI 87

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +      +   + +              T+++ TGT
Sbjct: 88  AEDGTKVIDCGDHKV-----------YAKTIIVATGT 113


>gi|307545700|ref|YP_003898179.1| dihydrolipoyl dehydrogenase [Halomonas elongata DSM 2581]
 gi|307217724|emb|CBV42994.1| dihydrolipoyl dehydrogenase [Halomonas elongata DSM 2581]
          Length = 479

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIVIG G  G  AA  AA+LG  TA +
Sbjct: 1  MADKFDVIVIGAGPGGYVAAIRAAQLGLKTACV 33


>gi|302414456|ref|XP_003005060.1| succinate dehydrogenase flavoprotein subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261356129|gb|EEY18557.1| succinate dehydrogenase flavoprotein subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 671

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 75/251 (29%), Gaps = 55/251 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGL--- 53
            +  YD IV+G G +G  AA   A+ G +TA    L   ++ T+ +    N A+G +   
Sbjct: 105 FDHEYDAIVVGAGGSGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAALGNMHED 164

Query: 54  ---------GKGH------------------LVREIDALDGLMGRVAD------AAGIQF 80
                     KG                    + E++       R  D      A G Q 
Sbjct: 165 DWRWHMYDTVKGSDWLGDQDAIHYMTREAPASIVELENYGCPFSRTEDGKIYQRAFGGQS 224

Query: 81  RVLNVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISSI 137
           +  N  KG         ADR  + L      + +    N   I+        +      +
Sbjct: 225 Q--NFGKGGQAYRCCAAADRTGHALLHTLYGQSLRHNTN-YFIEYFALDLIMQDGECRGV 281

Query: 138 VMQDNS-----MIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF-- 189
           +  +           +  VL TG + R            G  M       L N  ++F  
Sbjct: 282 LAYNQEDGTLHRFLANHTVLATGGYGRAYFSCTSAHTCTGDGMAMVARAGLPNQDLEFVQ 341

Query: 190 DFDTGRLKTGT 200
              TG    G 
Sbjct: 342 FHPTGIYGAGC 352


>gi|297563995|ref|YP_003682968.1| glucose-inhibited division protein A [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296848444|gb|ADH70462.1| glucose-inhibited division protein A [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 381

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+ V+GGG AG  AA  +A+ GA+  L+
Sbjct: 2  DITVVGGGLAGLTAAIASAERGANVTLL 29


>gi|297196361|ref|ZP_06913759.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720834|gb|EDY64742.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 510

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          SYD +++GGGH G  AAA  A+ G S  L+  +  T G+        G+
Sbjct: 6  SYDAVIVGGGHNGLVAAAYLARAGRSVLLLERRPHTGGAAVSTRPFPGV 54


>gi|196232243|ref|ZP_03131097.1| putative secreted protein, putative xanthan lyase related
           [Chthoniobacter flavus Ellin428]
 gi|196223611|gb|EDY18127.1| putative secreted protein, putative xanthan lyase related
           [Chthoniobacter flavus Ellin428]
          Length = 533

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 82/269 (30%), Gaps = 30/269 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +  + YDV+V  G   G  A+  AA+ G  T LI   T  +G ++ +       +  L  
Sbjct: 17  VFAQDYDVVVYSGVPCGISASIAAAREGQKTLLIEP-TRHVGGLNTSGLNTAETEHMLKW 75

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                 G+        G  +     K GPA       A++    +  + ++  +  L   
Sbjct: 76  T---FGGIAQEFYTRLGRHY----GKAGPAYYFESGVAEKTFLAMLDEAKVQVRYGLR-- 126

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVV--LTTGTFL--RGVIHIGKLKIPAGRMGD 176
              V     E   I S+ + D S +     V     G  +   GV +    +       +
Sbjct: 127 ---VEKVEKEGTRIGSLTLSDGSKVTARVFVDAGYEGDLMARAGVAYTWGRESRDEFGEE 183

Query: 177 SPSNSLFNSFMK----------FDFDTGRLKTGTPARLDGKTIIWD---KTEKQFADERL 223
           +       +  +              +G  +    A  D   + ++      K  A    
Sbjct: 184 AAGIRFDKTSRRAATVDEKGNLLPGMSGWARDFKEAAADKTVMNYNWRLCFSKDPAWRVP 243

Query: 224 IPFSFMTDKITNRQIECGITRTNLETHRI 252
           +P     D+   R +E  +         +
Sbjct: 244 MPAPTHYDRARYRLLENWLREKTAAGKEV 272


>gi|114769175|ref|ZP_01446801.1| N-methylproline demethylase, putative [alpha proteobacterium
           HTCC2255]
 gi|114550092|gb|EAU52973.1| N-methylproline demethylase, putative [alpha proteobacterium
           HTCC2255]
          Length = 681

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
            +   V+++G G AG EAA VAA+ G +  +   +  
Sbjct: 384 EKKRKVVIVGAGPAGLEAARVAAERGHNVVVFEAQPD 420


>gi|78184712|ref|YP_377147.1| hypothetical protein Syncc9902_1139 [Synechococcus sp. CC9902]
 gi|78169006|gb|ABB26103.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 595

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          MI +  DV+V GGG  G  AA  AA+ GAST L+T 
Sbjct: 1  MIRK--DVLVWGGGTGGVSAALQAARSGASTILLTP 34


>gi|330812252|ref|YP_004356714.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380360|gb|AEA71710.1| putative oxidoreductase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA VAA+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVAAERGHDVTLFEKK 422


>gi|258592346|emb|CBE68655.1| Dihydrolipoyl dehydrogenase (E3 component of pyruvate and
           2-oxoglutarate dehydrogenases complexes)
           (Dihydrolipoamide dehydrogenase) [NC10 bacterium 'Dutch
           sediment']
          Length = 468

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 18/164 (10%)

Query: 1   MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGK 55
           M++   +D+ V+G G  G  A+  AA+LG   AL+      +G +     C P    L  
Sbjct: 1   MVDERIFDLAVVGAGPGGYVASIRAAQLGMRVALVE--RDRLGGVCLNWGCIPTKALLQS 58

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
             ++  +              GI    L    G AV+  R +A+R    +     ++ + 
Sbjct: 59  SQVLSLMRRAG--------EFGIHTDNLRADFGIAVKRSREKAERLSKGIEF---LMRKN 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            + +  GE    +  +  ++    + +  IR   ++L TG+  R
Sbjct: 108 KVALFSGEARLTSARELEVTGRDGKRSEGIRAERILLATGSRPR 151


>gi|283853612|ref|ZP_06370848.1| geranylgeranyl reductase [Desulfovibrio sp. FW1012B]
 gi|283571003|gb|EFC19027.1| geranylgeranyl reductase [Desulfovibrio sp. FW1012B]
          Length = 390

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  ++D +++G G AG  AA V A+ GA+  L+
Sbjct: 1  MTTTHDAVIVGAGPAGSTAACVLARKGANVLLL 33


>gi|242049724|ref|XP_002462606.1| hypothetical protein SORBIDRAFT_02g028910 [Sorghum bicolor]
 gi|241925983|gb|EER99127.1| hypothetical protein SORBIDRAFT_02g028910 [Sorghum bicolor]
          Length = 421

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DVIV+G G  G  AA  A+  GA   L+
Sbjct: 16 FDVIVVGAGIMGSCAAYAASSRGARVLLL 44


>gi|195953182|ref|YP_002121472.1| geranylgeranyl reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932794|gb|ACG57494.1| geranylgeranyl reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 348

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 29/209 (13%)

Query: 2   INRSY--DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           + + +  DV++IGGG AG  AA   AK G    ++  + +    + C   I         
Sbjct: 1   MPKKFKTDVLIIGGGLAGSSAAHQLAKKGVDVIIVDSRKTIGVPVQCAEFIPKQ-LMQKK 59

Query: 60  REIDALDGLMGRVADAAG---IQFRVLNVKKGPAVRGPRTQADRELYRLAMQ---REILS 113
            E    + ++  + +         +V +  KG  V   R   D  +++ A++   R  L 
Sbjct: 60  FEDYFKNSVVQEIENMLTIEPDNKKVYSGSKG--VMVDRKVFDANIFQEAIKSGARAFLK 117

Query: 114 Q-------ENLDVIQGEVAGFNTEKNIISS-----------IVMQDNSMIRCSTVVLTTG 155
                   +N  +++ +   +  E + I             +  + + +  C+       
Sbjct: 118 TIFIGFYDKNTAILKAKDDVYYVEFDYIVGADGPRSSVMEKVFSKKHELAVCAQRRCKLK 177

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
             L+ ++ + +  I  G     P N+  N
Sbjct: 178 EPLKDIVIVFREYIKGGYGWIFPKNNYAN 206


>gi|114767349|ref|ZP_01446156.1| mercuric reductase [Pelagibaca bermudensis HTCC2601]
 gi|114540553|gb|EAU43628.1| mercuric reductase [Roseovarius sp. HTCC2601]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 54/165 (32%), Gaps = 42/165 (25%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREID 63
           YD+IV+G G AG  AA   A  G   AL+ H T   T  ++ C P+              
Sbjct: 20  YDLIVLGAGSAGFSAAITGADAGKRVALVGHGTIGGTCVNVGCVPSKA------------ 67

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL--DVIQ 121
                M R A+A           K       R Q D        Q  + S+++L   + Q
Sbjct: 68  -----MIRAAEAVHCA----GAAKRFPGLSGRAQVD------DWQTLVQSKDDLVTTLRQ 112

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTG 155
            + A    E   +              V      ++    ++ TG
Sbjct: 113 KKYADLLPEYEDVDYIDAGPARLIEGGVTVGERTLKAPRTIIATG 157


>gi|325277317|ref|ZP_08142943.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas sp.
          TJI-51]
 gi|324097552|gb|EGB95772.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas sp.
          TJI-51]
          Length = 464

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|313499730|gb|ADR61096.1| SthA [Pseudomonas putida BIRD-1]
          Length = 464

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|302037837|ref|YP_003798159.1| soluble pyridine nucleotide transhydrogenase [Candidatus
          Nitrospira defluvii]
 gi|300605901|emb|CBK42234.1| Soluble pyridine nucleotide transhydrogenase [Candidatus
          Nitrospira defluvii]
          Length = 472

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M   +YD++V+G G AG +AA   AK G    LI  
Sbjct: 1  MPPNAYDIVVVGSGPAGQKAAIQGAKAGKKVVLIEQ 36


>gi|238062210|ref|ZP_04606919.1| geranylgeranyl reductase [Micromonospora sp. ATCC 39149]
 gi|237884021|gb|EEP72849.1| geranylgeranyl reductase [Micromonospora sp. ATCC 39149]
          Length = 430

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DVIV+G G  G   A   A+ G    L+  KT       C   +       L+R
Sbjct: 15 DVIVVGAGPGGSATAYHLARHGVRVLLLE-KTEFPREKVCGDGLTPRAVRQLIR 67


>gi|167032700|ref|YP_001667931.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas putida
          GB-1]
 gi|189046864|sp|B0KH90|STHA_PSEPG RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|166859188|gb|ABY97595.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Pseudomonas putida GB-1]
          Length = 464

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|72384203|ref|YP_293557.1| twin-arginine translocation pathway signal [Ralstonia eutropha
           JMP134]
 gi|72123546|gb|AAZ65700.1| Twin-arginine translocation pathway signal [Ralstonia eutropha
           JMP134]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           DV+++G G AG  AA   A+ GA   ++  + +  G+   N    G G
Sbjct: 67  DVVIVGAGFAGLSAALELARHGAQVIVLEREFAGFGASGRNAGYLGGG 114


>gi|494262|pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
           From Pseudomonas Fluorescens At 2.8 Angstroms
           Resolution. Analysis Of Redox And Thermostability
           Properties
 gi|494263|pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
           From Pseudomonas Fluorescens At 2.8 Angstroms
           Resolution. Analysis Of Redox And Thermostability
           Properties
          Length = 477

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------------IGSMSCNPAI 50
           ++ +DV+VIG G  G  AA  AA+LG  TA I                  +G +     +
Sbjct: 1   SQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALL 60

Query: 51  GGLGKGHLVREIDALDGL--MGRVADAAGIQFRVLNVKKG 88
               K H  +E   + G+   G   D   +  R  N+ K 
Sbjct: 61  DSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKN 100


>gi|26988875|ref|NP_744300.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas putida
          KT2440]
 gi|148548797|ref|YP_001268899.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas putida
          F1]
 gi|38258493|sp|Q88KY8|STHA_PSEPK RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|166223483|sp|A5W6F5|STHA_PSEP1 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|24983683|gb|AAN67764.1|AE016408_2 soluble pyridine nucleotide transhydrogenase [Pseudomonas putida
          KT2440]
 gi|148512855|gb|ABQ79715.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Pseudomonas putida F1]
          Length = 464

 Score = 43.8 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|222090397|gb|ACM42402.1| RadH flavin-dependent halogenase [Chaetomium chiversii]
          Length = 520

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 64/212 (30%), Gaps = 22/212 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPAIGGLGKGHL 58
           I +S +V+V GGG AG  AA+  A+ G    L+    H    IG  S  P+I  L +   
Sbjct: 3   IPKSCEVLVAGGGPAGSYAASALAREGVDVVLLEADKHPRYHIGE-SMLPSIRPLLRFID 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           + E     G   ++  A  +  +        A  GP        Y              +
Sbjct: 62  LEETFEKHGFQKKLGAAFKLTAKREGYTDFVAAHGP------NGYSW------------N 103

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           V++ E      +    S  +      +           F  G       +  A R     
Sbjct: 104 VVRSESDELLFKHAAKSGALTFQGVKVDSLEFEPYDSDFPSGGKVANPGRPVAARWSAKD 163

Query: 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
             S   SF      TGR    +   L  +   
Sbjct: 164 GRSGTISFQYLVDATGRAGITSTKYLKNRKFN 195


>gi|171058424|ref|YP_001790773.1| FAD dependent oxidoreductase [Leptothrix cholodnii SP-6]
 gi|170775869|gb|ACB34008.1| FAD dependent oxidoreductase [Leptothrix cholodnii SP-6]
          Length = 441

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVREID 63
          DV V+GGG AG  AA   A+ G    L+  +    G+   N   AI GL       E  
Sbjct: 37 DVAVVGGGLAGLSAALELAERGHQVVLLEAQQVGWGASGRNGGQAIHGLACDQTEIEQQ 95


>gi|126734841|ref|ZP_01750587.1| succinate dehydrogenase, flavoprotein subunit [Roseobacter sp.
          CCS2]
 gi|126715396|gb|EBA12261.1| succinate dehydrogenase, flavoprotein subunit [Roseobacter sp.
          CCS2]
          Length = 601

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            +YD IV+G G AG  A    A+ G  TA IT
Sbjct: 8  THTYDAIVVGAGGAGLRATLGLAEQGLRTACIT 40


>gi|300784604|ref|YP_003764895.1| NAD(P) transhydrogenase [Amycolatopsis mediterranei U32]
 gi|299794118|gb|ADJ44493.1| NAD(P) transhydrogenase [Amycolatopsis mediterranei U32]
          Length = 481

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             YD+IVIG G  G +AA  AAKLG   A+I
Sbjct: 15 EHEYDLIVIGSGPGGQKAAIAAAKLGKKVAVI 46


>gi|284991294|ref|YP_003409848.1| NADH:flavin oxidoreductase/NADH oxidase [Geodermatophilus obscurus
           DSM 43160]
 gi|284064539|gb|ADB75477.1| NADH:flavin oxidoreductase/NADH oxidase [Geodermatophilus obscurus
           DSM 43160]
          Length = 677

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNP 48
           V V+GGG AG EAA   A+ G    L     S    I   + +P
Sbjct: 388 VAVVGGGPAGLEAARTLAERGHEVVLFEANPSLGGQIALAAKSP 431


>gi|254467596|ref|ZP_05081005.1| oxidoreductase [Rhodobacterales bacterium Y4I]
 gi|206684344|gb|EDZ44828.1| oxidoreductase [Rhodobacterales bacterium Y4I]
          Length = 423

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D++VIGGG+ GC AA  AA+LGAS  LI  + +  G    N  +   G      +I+A  
Sbjct: 30 DLVVIGGGYTGCSAALKAAELGASVRLIEAEDTGSGGSGRNVGLANAGLWLPPEDINAAI 89

Query: 67 GLMG 70
          G   
Sbjct: 90 GAKA 93


>gi|226502744|ref|NP_001141119.1| hypothetical protein LOC100273204 [Zea mays]
 gi|194702712|gb|ACF85440.1| unknown [Zea mays]
          Length = 416

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          ++DVIV+G G  G   A  AA  GA   L          +   P     G   ++R+  A
Sbjct: 18 NFDVIVVGAGIMGSCTAHAAASRGARVLL----LERFDLLH--PLGSSHGDSRIIRDAYA 71

Query: 65 L 65
           
Sbjct: 72 Q 72


>gi|168701058|ref|ZP_02733335.1| dihydrolipoamide dehydrogenase [Gemmata obscuriglobus UQM 2246]
          Length = 471

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          +  SYD++VIGGG  G  AA  AA+LG  TA +  +++ 
Sbjct: 1  MADSYDLVVIGGGPGGYMAAIRAAQLGLKTACVEKRSNK 39


>gi|108743007|emb|CAG38355.1| squalene epoxidase [Aspergillus niger]
          Length = 480

 Score = 43.8 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNP----AIGGL 53
           +I+   DV+++G G  GC  A    + G S  L+         I      P    A+  L
Sbjct: 22  LIHHHADVVIVGAGILGCALAVALGRQGRSVLLLEASMKEPDRIVGELLQPGGVEALEKL 81

Query: 54  GKGHLVREIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           G    + +IDA+   G                     PA +G      R  + + ++   
Sbjct: 82  GLADCLEDIDAIPAKGYHVTYFGKPVSFTYPKASPSSPAPQGCCFHHGR--FVMKLRAAA 139

Query: 112 LSQENLDVIQGEVAGFNTEKNI--ISSIVMQDNSMIRC 147
           L+  N+ V++ +     T  +   +  +      M  C
Sbjct: 140 LACPNVTVVETKATDLVTCSHTKQVLGVECVTGDMKDC 177


>gi|322688217|ref|YP_004207951.1| thioredoxin reductase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459553|dbj|BAJ70173.1| putative thioredoxin reductase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 643

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|317482387|ref|ZP_07941406.1| thioredoxin-disulfide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916181|gb|EFV37584.1| thioredoxin-disulfide reductase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|312133606|ref|YP_004000945.1| trxb1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772862|gb|ADQ02350.1| TrxB1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 643

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|300855908|ref|YP_003780892.1| thioredoxin reductase [Clostridium ljungdahlii DSM 13528]
 gi|300436023|gb|ADK15790.1| thioredoxin reductase [Clostridium ljungdahlii DSM 13528]
          Length = 315

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDVI+IG G AG  AA  +A+    T ++
Sbjct: 1  MNNIYDVIIIGSGPAGLSAAIYSARARLKTLIL 33


>gi|296453212|ref|YP_003660355.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182643|gb|ADG99524.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|291517711|emb|CBK71327.1| putative alkyl hydroperoxide reductase F subunit [Bifidobacterium
           longum subsp. longum F8]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|255264032|ref|ZP_05343374.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
 gi|255106367|gb|EET49041.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 40/227 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDVIVIG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H++ 
Sbjct: 3   SYDVIVIGSGPGGYVSAIRCAQLGLKTAIVEGR-ETLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61  EIDALDGLMGR------VADAAGIQFRVLNVKKGPAVRGPRTQADRELY----------- 103
           E +   G MG       V     +Q++   ++          + ++  +           
Sbjct: 62  EAEHNFGAMGLKGKSPSVDWKQMLQYKSDTIETNTKGVEFLMKKNKIDWLKGWGSIPATG 121

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
           ++ +  E+   +N+ +  G            S +       I    VV +TG    G I 
Sbjct: 122 QVKVGDEVHETKNIIIATG------------SDVATLPGVEIDEKVVVSSTGALELGKIP 169

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK--TGTPARLDGKT 208
                I AG         L + +++   +   ++        +D + 
Sbjct: 170 KRLAVIGAG----VIGLELGSVYLRLGSEVTVIEYLDAITPGMDAEV 212


>gi|227547470|ref|ZP_03977519.1| thioredoxin-disulfide reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212117|gb|EEI80013.1| thioredoxin-disulfide reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|239622814|ref|ZP_04665845.1| thioredoxin reductase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514811|gb|EEQ54678.1| thioredoxin reductase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|224132290|ref|XP_002328232.1| predicted protein [Populus trichocarpa]
 gi|222837747|gb|EEE76112.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 88/286 (30%), Gaps = 25/286 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R +DVIVIG G AG   A   ++ G     +              ++     G  V E 
Sbjct: 77  HRCFDVIVIGTGPAGLRLAEQVSRYGVKVCCVDPSP---------LSMWPNNYGVWVDEF 127

Query: 63  DALDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++L   +    D       V ++  K   +  P  +  R+ ++  +     S   +   +
Sbjct: 128 ESLG--LVDCLDKTWPMTCVYIDDDKTKYLDRPYARVGRKEFKTKLLENCASN-GVRFHK 184

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR----GVIHIGKLKIPAGRMGDS 177
            +V     E+   SSIV  D   +R S VV  +G                +I  G + + 
Sbjct: 185 AKVWKVKHEEFE-SSIVCDDGIELRASLVVDASGFASTFTEYDKPRNHGYQIAHGILAEV 243

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
             +      M    D      G    L                +  + F   T  ++   
Sbjct: 244 DYHPFDLDKMVL-MDWRDSHLGNEPCLRANNSKLPTFLYAMPFDSNLVFLEETSLVSKPL 302

Query: 238 IECGITRTNLETHRI----IM-ENIKHSAIYSGDIKSYGPRYCPSI 278
           +   +   N    R+    I  +N+         +    PR   S+
Sbjct: 303 LS-YMEVKNRMVARLRHLGIRVKNVIEEEKCLIPMGGPLPRIPQSV 347


>gi|213690960|ref|YP_002321546.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522421|gb|ACJ51168.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457010|dbj|BAJ67631.1| putative thioredoxin reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|190893729|ref|YP_001980271.1| dihydrolipoamide dehydrogenase [Rhizobium etli CIAT 652]
 gi|190699008|gb|ACE93093.1| dihydrolipoamide dehydrogenase protein [Rhizobium etli CIAT 652]
          Length = 468

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDVIVIG G  G   A  AA+LG   A++  K +T G    ++ C P+   L    +  
Sbjct: 2   SYDVIVIGTGPGGYVCAVKAAQLGLKVAVVE-KRATYGGTCLNVGCIPSKALLHASEMFH 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           +       +G    A  +    +   K       +   D   +       +  +  +D  
Sbjct: 61  QAGHGMSALGIDIPAPTLNLGNMMAHK---DATVKANVDGVAF-------LFKKNKIDAF 110

Query: 121 QGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           QG   G       ++ +  +D     I    +V+ TG+ + G+
Sbjct: 111 QG--TGKIVSAGKVA-VTTEDGQVQEIEGKNIVIATGSDVAGI 150


>gi|162147213|ref|YP_001601674.1| 2-oxoglutarate dehydrogenase E3 component [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544265|ref|YP_002276494.1| dihydrolipoamide dehydrogenase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785790|emb|CAP55361.1| 2-oxoglutarate dehydrogenase E3 component [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531942|gb|ACI51879.1| dihydrolipoamide dehydrogenase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 581

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIG G  G   A  AA+LG   A +  K +T+G    N     +G       + +
Sbjct: 122 DYDVIVIGAGPGGYVCAIRAAQLGFKVACVE-KRATLGGTCLN-----VGCIPSKALLQS 175

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            +       D AG    VL+  K   +   R  A +     A  + +         + +V
Sbjct: 176 SENYHAAAHDYAG-HGIVLDSVK---LDLARMMARKGEVVEANVKGVEF----LFKKNKV 227

Query: 125 AGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                T K   +  +  D   +    +V+ +G+   G+
Sbjct: 228 TWLKGTGKLEGTGRITVDGKPVTAKHIVIASGSDSAGL 265


>gi|38503459|gb|AAR22522.1| PltA [Pseudomonas fluorescens]
          Length = 43

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV++IGGG AG   A+  AK G   A+ 
Sbjct: 1  MSDHDYDVVIIGGGPAGSTMASYLAKAGVKCAVF 34


>gi|23465198|ref|NP_695801.1| thioredoxin reductase-like protein [Bifidobacterium longum NCC2705]
 gi|322690222|ref|YP_004219792.1| thioredoxin reductase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23325824|gb|AAN24437.1| thioredoxin reductase-like protein [Bifidobacterium longum NCC2705]
 gi|320455078|dbj|BAJ65700.1| putative thioredoxin reductase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|70730154|ref|YP_259893.1| alkylhalidase PltA [Pseudomonas fluorescens Pf-5]
 gi|4582981|gb|AAD24884.1| putative halogenase [Pseudomonas fluorescens Pf-5]
 gi|68344453|gb|AAY92059.1| probable alkylhalidase pltA [Pseudomonas fluorescens Pf-5]
          Length = 449

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV++IGGG AG   A+  AK G   A+ 
Sbjct: 1  MSDHDYDVVIIGGGPAGSTMASYLAKAGVKCAVF 34


>gi|89074958|ref|ZP_01161403.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photobacterium sp. SKA34]
 gi|89049197|gb|EAR54761.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photobacterium sp. SKA34]
          Length = 386

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 19/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + YDVIV GGG  G   A   AKLG   A++         +             H V  +
Sbjct: 2   KQYDVIVAGGGMVGAATALGLAKLGLDVAVLEGFAPRPFANTQPMDLRVSAISPHSVALL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------------RELYRLAMQRE 110
           D L      V +     F+ L   + P  R  R  AD              L +LA+ ++
Sbjct: 62  DRLGAW-NEVLNMRLCPFKRLETWETPECR-TRFNADDMGLEQLGYIVENRLLQLALWQQ 119

Query: 111 ILSQENLDVIQG--EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             + +NL +      V+    E   I  + +++   ++C  ++   G 
Sbjct: 120 FDNIDNLTLYCPSKMVSTTPIENGYI--VELENTQQLQCRLLIGADGA 165


>gi|46190353|ref|ZP_00121594.2| COG0492: Thioredoxin reductase [Bifidobacterium longum DJO10A]
 gi|189440268|ref|YP_001955349.1| thioredoxin reductase [Bifidobacterium longum DJO10A]
 gi|189428703|gb|ACD98851.1| Thioredoxin reductase [Bifidobacterium longum DJO10A]
          Length = 638

 Score = 43.8 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 5   NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 51

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  L    + +
Sbjct: 52  VNYPGVGRTTGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILI 111

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 112 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKY 168

Query: 170 PA 171
            +
Sbjct: 169 AS 170


>gi|308492550|ref|XP_003108465.1| hypothetical protein CRE_11146 [Caenorhabditis remanei]
 gi|308248205|gb|EFO92157.1| hypothetical protein CRE_11146 [Caenorhabditis remanei]
          Length = 796

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +SYD I+IGGGH G  AAA  AK G    ++
Sbjct: 264 KQSYDAIIIGGGHNGLTAAAYLAKAGKKVCVL 295


>gi|308452240|ref|XP_003088967.1| hypothetical protein CRE_06226 [Caenorhabditis remanei]
 gi|308244172|gb|EFO88124.1| hypothetical protein CRE_06226 [Caenorhabditis remanei]
          Length = 544

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +SYD I+IGGGH G  AAA  AK G    ++
Sbjct: 12 KQSYDAIIIGGGHNGLTAAAYLAKAGKKVCVL 43


>gi|292654018|ref|YP_003533916.1| thioredoxin reductase [Haloferax volcanii DS2]
 gi|291369624|gb|ADE01852.1| thioredoxin reductase [Haloferax volcanii DS2]
          Length = 194

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREID 63
          DVIVIGGG AG   A  AAK G ST +     +      +   P IG +   + +  + 
Sbjct: 3  DVIVIGGGPAGLTTALFAAKNGLSTTVFDTDQTWMHKAHLFNYPGIGSIDGSNYMETLR 61


>gi|196228096|ref|ZP_03126963.1| dihydrolipoamide dehydrogenase [Chthoniobacter flavus Ellin428]
 gi|196227499|gb|EDY22002.1| dihydrolipoamide dehydrogenase [Chthoniobacter flavus Ellin428]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
          +YD+IVIG G AG  AA  AA+LG   A +         +  G +     +      H +
Sbjct: 3  NYDLIVIGAGPAGYVAAIKAAQLGKKVACVDKDRTGGTCNNYGCIPTKALLKNAELFHTM 62

Query: 60 REIDALDGLMGR 71
          +   A  G    
Sbjct: 63 KHRAAEFGFKIE 74


>gi|89053328|ref|YP_508779.1| dihydrolipoamide dehydrogenase [Jannaschia sp. CCS1]
 gi|88862877|gb|ABD53754.1| dihydrolipoamide dehydrogenase [Jannaschia sp. CCS1]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G   A   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIVIGSGPGGYVCAIRCAQLGLKTACVEGR-ETLGGTCLNIGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFATMGLKGK 75


>gi|268552983|ref|XP_002634474.1| Hypothetical protein CBG10733 [Caenorhabditis briggsae]
 gi|187030852|emb|CAP30053.1| hypothetical protein CBG_10733 [Caenorhabditis briggsae AF16]
          Length = 544

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +SYD I+IGGGH G  AAA  AK G    ++
Sbjct: 12 KQSYDAIIIGGGHNGLTAAAYLAKAGKKVCVL 43


>gi|85703496|ref|ZP_01034600.1| Geranylgeranyl hydrogenase [Roseovarius sp. 217]
 gi|85672424|gb|EAQ27281.1| Geranylgeranyl hydrogenase [Roseovarius sp. 217]
          Length = 394

 Score = 43.8 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGL--GKGHLVREI 62
           +DV+VIGGG +G  AA   A+ G   AL        G +  C  AI        HL  + 
Sbjct: 4   FDVVVIGGGPSGATAAEDLARSGHKVAL----LDRAGRIKPCGGAIPPRLIADFHLPDDQ 59

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                   R+    G    +  ++ G      R + D  L   A Q
Sbjct: 60  IVAKITTARMISPTGRHVDIP-IENGFVGMVDREEFDEFLRVRAAQ 104


>gi|324326462|gb|ADY21722.1| hypothetical protein YBT020_12420 [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++            +  +GG  +G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLAASIYLAKAGKKVIVLE----------KSNHLGG--RGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F+  N
Sbjct: 50 ICMNLGAHAVYRGGEAFKTFN 70


>gi|319440727|ref|ZP_07989883.1| dihydrolipoamide dehydrogenase [Corynebacterium variabile DSM
          44702]
          Length = 474

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDV+VIG G  G  AA  AA+LG  TA++
Sbjct: 1  MAEHYDVVVIGAGPGGYVAAIRAAQLGLKTAVV 33


>gi|162146285|ref|YP_001600744.1| oxidoreductase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784860|emb|CAP54403.1| putative oxidoreductase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 423

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 13/173 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YDV VIGGG  G  AA   A+ GA   ++  +    G+   N      G  H   +
Sbjct: 22  VDGHYDVAVIGGGFTGLSAARQLARAGARVVVLEAERVGWGASGRNGGHLNNGLAHSYPD 81

Query: 62  IDA-LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             A L          A       +     A        D + +R A + ++ S+      
Sbjct: 82  AKAKLGKERAIALYKAFD-----DSIDTIASIIDDEGIDCD-FRRAGKLKLASKP----- 130

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              VAG       I + V  D +  R          F   ++      +  GR
Sbjct: 131 -QHVAGLAKNFEAIHAEVDPDTACCRRRLKAEIGAPFYGAMLFRKSAVMHMGR 182


>gi|57471074|gb|AAW50855.1| mitochondrial complex II component succinate dehydrogenase alpha
           subunit [Nyctotherus ovalis]
          Length = 652

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 76/248 (30%), Gaps = 49/248 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGLGKG 56
            +  +D +VIG G AG  A    A+ G  TA    L   ++ T+ +    N A+G + K 
Sbjct: 53  FDHYFDAVVIGAGGAGLRATFGMAEAGLRTACISKLFPTRSHTVAAQGGINAALGNMHKD 112

Query: 57  -------HLVREIDALDG-----LMGRVA-------DAAGIQFRVLNVKK---------- 87
                    V+  D L        M + A       ++ G+ F      K          
Sbjct: 113 DWKWHFYDTVKGSDWLGDQDTIHYMCKEAPGAVLELESYGMPFSRTKEGKIYQRAFGGGT 172

Query: 88  ---GPAVRGPRTQADRELYRLAMQREIL----SQENLDVIQGEVAGFNTEKNIISSIV-- 138
              G   +  R  A  +    +M   +     + +    I+        E      ++  
Sbjct: 173 KDYGKGGQAYRCAAVADRTGHSMLHTLFGRALAYDCTFFIEYFALDLLMEDGRCRGVICM 232

Query: 139 -MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF--DFD 192
            M D ++  I  +  ++ TG F R            G          L    M+F     
Sbjct: 233 NMADGTIHRIAANQTIIATGGFGRAYYSSTLAHTCTGDGNAMVSRAGLPQEDMEFVQFHP 292

Query: 193 TGRLKTGT 200
           TG    G 
Sbjct: 293 TGIYGAGC 300


>gi|89899048|ref|YP_521519.1| FAD dependent oxidoreductase [Rhodoferax ferrireducens T118]
 gi|89343785|gb|ABD67988.1| FAD dependent oxidoreductase [Rhodoferax ferrireducens T118]
          Length = 427

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV+++G G  GC AA   A+ GA   L+    
Sbjct: 30 DVVIVGAGFTGCAAALAMAQRGARVRLLEANV 61


>gi|57471072|gb|AAW50854.1| mitochondrial complex II component succinate dehydrogenase alpha
           subunit [Nyctotherus ovalis]
          Length = 652

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 76/248 (30%), Gaps = 49/248 (19%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGLGKG 56
            +  +D +VIG G AG  A    A+ G  TA    L   ++ T+ +    N A+G + K 
Sbjct: 53  FDHYFDAVVIGAGGAGLRATFGMAEAGLRTACISKLFPTRSHTVAAQGGINAALGNMHKD 112

Query: 57  -------HLVREIDALDG-----LMGRVA-------DAAGIQFRVLNVKK---------- 87
                    V+  D L        M + A       ++ G+ F      K          
Sbjct: 113 DWKWHFYDTVKGSDWLGDQDTIHYMCKEAPGAVLELESYGMPFSRTKEGKIYQRAFGGGT 172

Query: 88  ---GPAVRGPRTQADRELYRLAMQREIL----SQENLDVIQGEVAGFNTEKNIISSIV-- 138
              G   +  R  A  +    +M   +     + +    I+        E      ++  
Sbjct: 173 KDYGKGGQAYRCAAVADRTGHSMLHTLFGRALAYDCTFFIEYFALDLLMEDGRCRGVICM 232

Query: 139 -MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF--DFD 192
            M D ++  I  +  ++ TG F R            G          L    M+F     
Sbjct: 233 NMADGTIHRIAANQTIIATGGFGRAYYSSTLAHTCTGDGNAMVSRAGLPQEDMEFVQFHP 292

Query: 193 TGRLKTGT 200
           TG    G 
Sbjct: 293 TGIYGAGC 300


>gi|56459249|ref|YP_154530.1| FAD-binding protein [Idiomarina loihiensis L2TR]
 gi|56178259|gb|AAV80981.1| FAD-binding protein [Idiomarina loihiensis L2TR]
          Length = 411

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV++IG G AG  AAA+ A +G S  ++
Sbjct: 1  MEESIYDVVIIGAGPAGSTAAAMLANVGKSVLVV 34


>gi|299066398|emb|CBJ37583.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Ralstonia solanacearum CMR15]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLSVAVLS 42


>gi|295093334|emb|CBK82425.1| Thioredoxin reductase [Coprococcus sp. ART55/1]
          Length = 525

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD+IVIG G AG  AA  AAK G    + 
Sbjct: 1  MIERYDLIVIGAGPAGLSAAIEAAKNGMKPIVF 33


>gi|294086028|ref|YP_003552788.1| hypothetical protein SAR116_2461 [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292665603|gb|ADE40704.1| HI0933 family protein [Candidatus Puniceispirillum marinum
          IMCC1322]
          Length = 394

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  SYDV++IG G AG   A  A K G    ++ H
Sbjct: 1  MRFSYDVVIIGAGAAGLMCAIAAGKRGRQVVVLDH 35


>gi|255528726|ref|ZP_05395454.1| Thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
 gi|255507582|gb|EET84094.1| Thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
          Length = 165

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDVI+IG G AG  AA  +A+    T ++
Sbjct: 1  MNNIYDVIIIGSGPAGLSAAIYSARARLKTLIL 33


>gi|58582347|ref|YP_201363.1| hypothetical protein XOO2724 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624226|ref|YP_451598.1| hypothetical protein XOO_2569 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576169|ref|YP_001913098.1| hypothetical protein PXO_00402 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426941|gb|AAW75978.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368166|dbj|BAE69324.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520621|gb|ACD58566.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 393

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 14/147 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSAFTAGRRGRQVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFISANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRC 147
             ++     ++   + + ++    +  
Sbjct: 108 SKQIVRMLLDECDTAGVQIRTQCEVLS 134


>gi|54310001|ref|YP_131021.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Photobacterium profundum SS9]
 gi|46914440|emb|CAG21219.1| putative 2-polyprenyl-6-methoxyphenol hydroxylase [Photobacterium
           profundum SS9]
          Length = 419

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 26/171 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG------- 56
             YDVIV GGG  G   A   A+ G S A+              P   GL          
Sbjct: 36  EQYDVIVAGGGMVGAATALGLAQQGLSVAV----IEGKAPEPFEPHSDGLTCSAISPNSI 91

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYRLA------ 106
            L+  + A D +M          F+ L   + P  R          DR  Y +       
Sbjct: 92  ALLTRLGAWDSIM----KMRLCPFKRLETWEHPECRTRFNADEMNLDRLGYIIENRIIQL 147

Query: 107 -MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +  +     NL ++       +        + + +   ++   ++   G 
Sbjct: 148 GLWHQFDLYPNLTLLCPARMAHSHSTTDGYCVALDNGRQLQAKLLIGADGA 198


>gi|17546713|ref|NP_520115.1| succinate dehydrogenase flavoprotein subunit [Ralstonia
          solanacearum GMI1000]
 gi|17429012|emb|CAD15696.1| putative succinate dehydrogenase (flavoprotein subunit)
          oxidoreductase [Ralstonia solanacearum GMI1000]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLSVAVLS 42


>gi|83748083|ref|ZP_00945112.1| Succinate dehydrogenase flavoprotein subunit [Ralstonia
          solanacearum UW551]
 gi|207723907|ref|YP_002254305.1| succinate dehydrogenase (flavoprotein subunit) [Ralstonia
          solanacearum MolK2]
 gi|207742803|ref|YP_002259195.1| succinate dehydrogenase (flavoprotein subunit) [Ralstonia
          solanacearum IPO1609]
 gi|83725269|gb|EAP72418.1| Succinate dehydrogenase flavoprotein subunit [Ralstonia
          solanacearum UW551]
 gi|206589113|emb|CAQ36075.1| succinate dehydrogenase (flavoprotein subunit) [Ralstonia
          solanacearum MolK2]
 gi|206594197|emb|CAQ61124.1| succinate dehydrogenase (flavoprotein subunit) [Ralstonia
          solanacearum IPO1609]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLSVAVLS 42


>gi|330507484|ref|YP_004383912.1| thioredoxin reductase [Methanosaeta concilii GP-6]
 gi|328928292|gb|AEB68094.1| thioredoxin reductase [Methanosaeta concilii GP-6]
          Length = 299

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+++G G AG  AA   A+ G  T ++
Sbjct: 2  YDVVIVGAGPAGLTAAMYCARGGKKTLVL 30


>gi|315612888|ref|ZP_07887799.1| thioredoxin-disulfide reductase [Streptococcus sanguinis ATCC
          49296]
 gi|315314998|gb|EFU63039.1| thioredoxin-disulfide reductase [Streptococcus sanguinis ATCC
          49296]
          Length = 303

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I++G G AG  AA  AA+     ALI
Sbjct: 2  YDTIIVGAGPAGMTAALYAARSNLKVALI 30


>gi|293365119|ref|ZP_06611836.1| thioredoxin reductase [Streptococcus oralis ATCC 35037]
 gi|307702176|ref|ZP_07639136.1| thioredoxin-disulfide reductase [Streptococcus oralis ATCC 35037]
 gi|291316569|gb|EFE57005.1| thioredoxin reductase [Streptococcus oralis ATCC 35037]
 gi|307624189|gb|EFO03166.1| thioredoxin-disulfide reductase [Streptococcus oralis ATCC 35037]
          Length = 303

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I++G G AG  AA  AA+     ALI
Sbjct: 2  YDTIIVGAGPAGMTAALYAARSNLKVALI 30


>gi|270293025|ref|ZP_06199236.1| thioredoxin reductase [Streptococcus sp. M143]
 gi|270279004|gb|EFA24850.1| thioredoxin reductase [Streptococcus sp. M143]
          Length = 303

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I++G G AG  AA  AA+     ALI
Sbjct: 2  YDTIIVGAGPAGMTAALYAARSNLKVALI 30


>gi|121610895|ref|YP_998702.1| dihydrolipoamide dehydrogenase [Verminephrobacter eiseniae
          EF01-2]
 gi|121555535|gb|ABM59684.1| dihydrolipoamide dehydrogenase [Verminephrobacter eiseniae
          EF01-2]
          Length = 481

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++++DVIVIG G  G  AA  AA+LG +TA I
Sbjct: 1  MSQAFDVIVIGAGPGGYIAAIRAAQLGLNTACI 33


>gi|88604277|ref|YP_504455.1| glutaredoxin [Methanospirillum hungatei JF-1]
 gi|88189739|gb|ABD42736.1| glutaredoxin [Methanospirillum hungatei JF-1]
          Length = 391

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +DVI++G G AG  AA    +    T +I+   
Sbjct: 92  FDVIIVGAGPAGLTAALYCVRKNLKTLMISPDI 124


>gi|56708507|ref|YP_170403.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670978|ref|YP_667535.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457673|ref|ZP_03666146.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371134|ref|ZP_04987136.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875356|ref|ZP_05248066.1| nadB, L-aspartate oxidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604999|emb|CAG46100.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321311|emb|CAL09483.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569374|gb|EDN35028.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841355|gb|EET19791.1| nadB, L-aspartate oxidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159720|gb|ADA79111.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 495

 Score = 43.8 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKDDKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|325266903|ref|ZP_08133574.1| dihydrolipoyl dehydrogenase [Kingella denitrificans ATCC 33394]
 gi|324981644|gb|EGC17285.1| dihydrolipoyl dehydrogenase [Kingella denitrificans ATCC 33394]
          Length = 476

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DV+VIG G  G  AA  AA+LG  TA I    +  G     PA+GG 
Sbjct: 3  QFDVVVIGAGPGGYVAAIRAAQLGFKTACIDAGVNKAGDA---PALGGT 48


>gi|320335376|ref|YP_004172087.1| dihydrolipoamide dehydrogenase [Deinococcus maricopensis DSM 21211]
 gi|319756665|gb|ADV68422.1| dihydrolipoamide dehydrogenase [Deinococcus maricopensis DSM 21211]
          Length = 468

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 68/194 (35%), Gaps = 25/194 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSM-------SCNPAIGGLGKGH 57
           +DV+VIGGG AG  AA  AA+LG  TA +   + +   S+        C P+   L    
Sbjct: 4   FDVLVIGGGPAGYVAAIRAAQLGFKTACVDAFERNGKASLGGTCLNVGCIPSKAMLDSSE 63

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
               I       G V D A +    +  +K   V        + L++    +       L
Sbjct: 64  KFEMITHEADEHGIVVDGARVDLNKMLARKDAVVDKLTGGI-QFLFKKNKIKSYHGYGRL 122

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD- 176
              +G+             IV      +    V++ TG+  R +     L    G + + 
Sbjct: 123 VRREGDA-----------WIVDAAGEEVSAKNVIVATGSNPRAL----PLAPFGGHIVEN 167

Query: 177 SPSNSLFNSFMKFD 190
           S + +L     +  
Sbjct: 168 SGALALTEVPQRLG 181


>gi|303257023|ref|ZP_07343037.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
 gi|302860514|gb|EFL83591.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
          Length = 507

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           N  +D++++G G AG  AA  A K G    LI  K    G  SC
Sbjct: 37 FNEVHDLVIVGSGFAGLSAAYAALKAGVKDILILDKMEAFGGNSC 81


>gi|294789492|ref|ZP_06754728.1| dihydrolipoyl dehydrogenase [Simonsiella muelleri ATCC 29453]
 gi|294482572|gb|EFG30263.1| dihydrolipoyl dehydrogenase [Simonsiella muelleri ATCC 29453]
          Length = 477

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DV+VIG G  G  AA  AA+LG  TA I    +  G     PA+GG 
Sbjct: 3  QFDVVVIGAGPGGYVAAIRAAQLGFKTACIDAGVNKAGDA---PALGGT 48


>gi|209543711|ref|YP_002275940.1| FAD dependent oxidoreductase [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209531388|gb|ACI51325.1| FAD dependent oxidoreductase [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 424

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++  YDV VIGGG  G  AA   A+ GA   ++  +    G+   N      G  H 
Sbjct: 22 VDGHYDVAVIGGGFTGLSAARQLARAGARVVVLEAERVGWGASGRNGGHLNNGLAHS 78


>gi|124267355|ref|YP_001021359.1| succinate dehydrogenase subunit A [Methylibium petroleiphilum
          PM1]
 gi|124260130|gb|ABM95124.1| succinate dehydrogenase subunit A [Methylibium petroleiphilum
          PM1]
          Length = 596

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 7  TRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 39


>gi|315446719|ref|YP_004079598.1| lycopene cyclase (CrtL-type) [Mycobacterium sp. Spyr1]
 gi|315265022|gb|ADU01764.1| lycopene cyclase (CrtL-type) [Mycobacterium sp. Spyr1]
          Length = 401

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          DV+V+G G AG   A   A+ G +TA++      
Sbjct: 5  DVLVVGAGPAGLAVAGACARRGLATAVLDPGPDR 38


>gi|299750351|ref|XP_001836698.2| hypothetical protein CC1G_08083 [Coprinopsis cinerea okayama7#130]
 gi|298408861|gb|EAU85110.2| hypothetical protein CC1G_08083 [Coprinopsis cinerea okayama7#130]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 16/158 (10%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+GGG AG   A    ++G    ++        ++        L K      ++     
Sbjct: 23  IVVGGGIAGLSCAVALRRVGHRVTVLERHPDVFQAVGGCRMAPNLSKILFHWGLENECRR 82

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-------LYRLAMQREILSQ---ENLD 118
           +G ++   GI FRVL   +         +  RE        Y   +++ +         D
Sbjct: 83  IGELSK--GIDFRVLESGEHIGQHTWDEEVIRETRGEFLFTYHADLRKLLYDTAVGCGAD 140

Query: 119 VIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +  G  V   + +      + +    +I+   ++   G
Sbjct: 141 IRMGVAVTDVDPDNQR---VKLATGEVIQGDAIIGADG 175


>gi|295085242|emb|CBK66765.1| FAD binding domain. [Bacteroides xylanisolvens XB1A]
          Length = 624

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA+T ++  +T  +G M     +   G   +    
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAATLIVE-ETEWLGGM-----LTSAGVSAVDGNY 76

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
           D   GL G   +     +  L+  K           +  +        +  ++NL V   
Sbjct: 77  DLPAGLFGEFREHLADYYGGLDSLKT--GWVSAVLFEPSVGNKIFHEMVDVEKNLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     EK++ I+ I M+DN++ +    +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLEREKDVWIAQIQMKDNTIKKIHAKILIDGTELGDIAKMCGVKYDVG 186


>gi|257865819|ref|ZP_05645472.1| thioredoxin reductase [Enterococcus casseliflavus EC30]
 gi|257872154|ref|ZP_05651807.1| thioredoxin reductase [Enterococcus casseliflavus EC10]
 gi|257799753|gb|EEV28805.1| thioredoxin reductase [Enterococcus casseliflavus EC30]
 gi|257806318|gb|EEV35140.1| thioredoxin reductase [Enterococcus casseliflavus EC10]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 81/263 (30%), Gaps = 46/263 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI+IG G AG  AA  A++   S  +I                          E  A 
Sbjct: 2   YDVIIIGAGPAGMTAALYASRSNLSVLMI--------------------------ERGAP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL--DVI-QG 122
            G M   A+       V N     ++ GP      ++Y  A++  + +   +   +  QG
Sbjct: 36  GGQMNNTAE-------VENYPGFESILGPELAF--KMYEGAIKFGVENAYGIVQSITDQG 86

Query: 123 EVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           E     TE        +++    + R   V        RGV +         R       
Sbjct: 87  EFKEVATEDKTYQGKTVIIATGCVHRKLGVKGEEEFAGRGVSYCAVCDGAFFRNKRLIVV 146

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-----N 235
              +S ++      +  +          +   K   Q         SF+ D +      N
Sbjct: 147 GGGDSAVEEAIYLTQFASEVTIVHRRDELRAQKI-IQDRAFANEKISFIWDSVVEEIKGN 205

Query: 236 RQIECGITRTNLETHRIIMENIK 258
             +  G+   N++T  +  E+  
Sbjct: 206 EMVVTGVQIRNVKTDEVTEESAG 228


>gi|239503623|ref|ZP_04662933.1| Monomeric sarcosine oxidase(MSOX) [Acinetobacter baumannii AB900]
          Length = 384

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D+IV+G G  G  AA  A + G    +       +G+   N   G +G   L  
Sbjct: 1  MNHVQFDLIVVGAGILGLSAAIQAQEQGLKVCIFEKNAKPVGATRRN--FGMVGTSTLTH 58


>gi|218884191|ref|YP_002428573.1| NADH oxidase [Desulfurococcus kamchatkensis 1221n]
 gi|218765807|gb|ACL11206.1| NADH oxidase [Desulfurococcus kamchatkensis 1221n]
          Length = 418

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG--SMSC-NPAIG 51
          M    YDV+VIGGG AG  +A  A  LG  TALI      +G   + C +P  G
Sbjct: 1  METLVYDVVVIGGGPAGIASAIKADSLGLKTALIE-NRDILGGIPLQCIHPGFG 53


>gi|167769247|ref|ZP_02441300.1| hypothetical protein ANACOL_00570 [Anaerotruncus colihominis DSM
          17241]
 gi|167668887|gb|EDS13017.1| hypothetical protein ANACOL_00570 [Anaerotruncus colihominis DSM
          17241]
          Length = 495

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD+ VIG G  G  AA  AAKLG    + 
Sbjct: 28 MEQMYDLAVIGAGPGGYTAALTAAKLGMRVIVF 60


>gi|145225301|ref|YP_001135979.1| hypothetical protein Mflv_4723 [Mycobacterium gilvum PYR-GCK]
 gi|145217787|gb|ABP47191.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
          Length = 449

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 38/175 (21%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IVIG    G      AA+      +++     +     +P   G      V +   +  L
Sbjct: 7   IVIGASLGG----LCAAR------VLSSAFDDVTVFERDPLPEGPANRPAVPQGRHVHLL 56

Query: 69  MGRVADAAGIQF-----------------RVLNVKKGPAVRGP----RTQADRELYR--- 104
           M R A      F                 R   +  G A        R Q +   Y    
Sbjct: 57  MARGAAEFETLFPGLLDDMVACGVPILENRPDCIHFGAAGHLLGTTHRLQDEFTAYVPSR 116

Query: 105 ----LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                 ++R +L+ +N+ +I   V     + + ++ +   D + +    VV  TG
Sbjct: 117 PHLEWQIRRRVLALDNVRLIDCGVDEPVYDGHRVTGVRTADGATVDADFVVDATG 171


>gi|303232342|ref|ZP_07319036.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Atopobium vaginae PB189-T1-4]
 gi|302481559|gb|EFL44625.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Atopobium vaginae PB189-T1-4]
          Length = 297

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 48/153 (31%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV+G G AG  AA  A   G S  +                           E + + 
Sbjct: 3   DLIVVGAGPAGVSAALYAQSRGLSVTMF--------------------------EKNEVG 36

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGE 123
           GL+G+V+  +     V                D   Y+  ++  +L+Q    NL+ +  E
Sbjct: 37  GLIGKVSKVSHYTSIV---------------VDEPGYK--VKERMLNQLRAYNLEPLYEE 79

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           V    T+   + S+  Q        TVV+  G+
Sbjct: 80  VTKV-TKTGDVFSVTTQKGC-YTARTVVIACGS 110


>gi|297741872|emb|CBI33260.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 59  DIIIVGAGVAGSALAHTLGKDGRRVHIIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 118

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            EIDA   ++G      G   R+    +               +   M+ +     N+ +
Sbjct: 119 EEIDAQ-RVLGYALFKDGKNTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAAFLSNVRM 177

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    +    ++ 
Sbjct: 178 EQGTVTSLLEENGTIKGVQYKTKAGQELKA 207


>gi|254481250|ref|ZP_05094495.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038413|gb|EEB79075.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 527

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  DVIVIG GH G   A   AK G    ++
Sbjct: 1  MKQETDVIVIGAGHNGLTCAGYLAKAGLKVKML 33


>gi|146277065|ref|YP_001167224.1| geranylgeranyl reductase [Rhodobacter sphaeroides ATCC 17025]
 gi|145555306|gb|ABP69919.1| geranylgeranyl reductase [Rhodobacter sphaeroides ATCC 17025]
          Length = 394

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLVREIDA 64
           YDV V+GGG +G  AA   A+ G   AL        G +  C    GG     L+ + D 
Sbjct: 3   YDVFVVGGGPSGATAADELARAGKRVAL----LDRAGRIKPC----GGAIPPRLIEDFDI 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
            D  +      A +          P   G     DRE +   ++
Sbjct: 55  PDSQIVARIRTARMISPTGRKVDIPIEGGFVGMVDREHFDEWLR 98


>gi|333030129|ref|ZP_08458190.1| protoporphyrinogen oxidase [Bacteroides coprosuis DSM 18011]
 gi|332740726|gb|EGJ71208.1| protoporphyrinogen oxidase [Bacteroides coprosuis DSM 18011]
          Length = 456

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          MI   YDV++IG G  G  AA    K G   A+I   
Sbjct: 1  MIKEKYDVVIIGAGLTGLTAAFYLHKKGKKVAVIEQN 37


>gi|332214248|ref|XP_003256243.1| PREDICTED: squalene monooxygenase [Nomascus leucogenys]
          Length = 574

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G   A+I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVAVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +DA   +G M    +A         + +   V+  R       + +++++  +++ N 
Sbjct: 185 EGLDAQVVNGYMIHDQEAKSEVQIPYPLSENNQVQSGRA-FHHGRFIMSLRKAAMAEPNA 243

Query: 118 DVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP-- 170
             I+G V     E +I+  +        D   +     V+  G F +    +   K+   
Sbjct: 244 KFIEGVVLQLLEEDDIVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSVS 303

Query: 171 ---AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIWD 212
               G +  +      N              +     +T       G   R + +  + +
Sbjct: 304 SHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMVE 362

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIE 239
           K   Q  D    PF   TD    R + 
Sbjct: 363 KIYPQIPDHLKEPFLEATDNSRLRSMP 389


>gi|330980074|gb|EGH78310.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|330967280|gb|EGH67540.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|330955362|gb|EGH55622.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae Cit
           7]
          Length = 402

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 264 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 308


>gi|330955011|gb|EGH55271.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae Cit
           7]
          Length = 481

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 188 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 232


>gi|330943173|gb|EGH45584.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 623

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 330 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 374


>gi|331088431|ref|ZP_08337346.1| hypothetical protein HMPREF1025_00929 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408198|gb|EGG87686.1| hypothetical protein HMPREF1025_00929 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 606

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+++G G  GCEAA   AK G    L+  
Sbjct: 470 VVIVGAGLTGCEAALSLAKAGKEVTLVDM 498



 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPAIGGLGKGHLVREIDA 64
           + VIGGG AG EAA  AA+ G +  L   K   +G   +M+  P      K ++   I +
Sbjct: 347 IAVIGGGPAGIEAARTAAQRGHTVDLYE-KEDHLGGVLTMAGAPKFKQDIKKYVEWTIHS 405

Query: 65  LDG 67
           + G
Sbjct: 406 ISG 408


>gi|313672838|ref|YP_004050949.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939594|gb|ADR18786.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Calditerrivibrio nitroreducens DSM 19672]
          Length = 461

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          + ++ D+++IG G AG  AA   AK G   A+I    ++
Sbjct: 5  VKKNIDIVIIGAGPAGSSAAIELAKAGKKVAIIDKNLNS 43


>gi|302186148|ref|ZP_07262821.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           syringae 642]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|300703706|ref|YP_003745308.1| succinate dehydrogenase, catalytic and nad/flavoprotein subunit
          [Ralstonia solanacearum CFBP2957]
 gi|299071369|emb|CBJ42688.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Ralstonia solanacearum CFBP2957]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLSVAVLS 42


>gi|289672497|ref|ZP_06493387.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 662

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 369 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 413


>gi|284042069|ref|YP_003392409.1| HI0933 family protein [Conexibacter woesei DSM 14684]
 gi|283946290|gb|ADB49034.1| HI0933 family protein [Conexibacter woesei DSM 14684]
          Length = 392

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IG G AG   A  AA+ G    L+ H             + G G+ +
Sbjct: 5  DVVIIGAGAAGLMCALTAAERGRRVLLVDHS----NKAGKKILMSGGGRCN 51


>gi|254722436|ref|ZP_05184224.1| hypothetical protein BantA1_08214 [Bacillus anthracis str. A1055]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KNFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|237802318|ref|ZP_04590779.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025175|gb|EGI05231.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|167632544|ref|ZP_02390871.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170687042|ref|ZP_02878261.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|254685030|ref|ZP_05148890.1| hypothetical protein BantC_14395 [Bacillus anthracis str.
          CNEVA-9066]
 gi|254743338|ref|ZP_05201023.1| hypothetical protein BantKB_20427 [Bacillus anthracis str. Kruger
          B]
 gi|167532842|gb|EDR95478.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170669093|gb|EDT19837.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KNFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|153815328|ref|ZP_01967996.1| hypothetical protein RUMTOR_01562 [Ruminococcus torques ATCC 27756]
 gi|317501684|ref|ZP_07959875.1| hypothetical protein HMPREF1026_01819 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847390|gb|EDK24308.1| hypothetical protein RUMTOR_01562 [Ruminococcus torques ATCC 27756]
 gi|316896935|gb|EFV19015.1| hypothetical protein HMPREF1026_01819 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 645

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+++G G  GCEAA   AK G    L+  
Sbjct: 509 VVIVGAGLTGCEAALSLAKAGKEVTLVDM 537



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPAIGGLGKGHLVREIDA 64
           + VIGGG AG EAA  AA+ G +  L   K   +G   +M+  P      K ++   I +
Sbjct: 386 IAVIGGGPAGIEAARTAAQRGHTVDLYE-KEDHLGGVLTMAGAPKFKQDIKKYVEWTIHS 444

Query: 65  LDG 67
           + G
Sbjct: 445 ISG 447


>gi|66048006|ref|YP_237847.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258713|gb|AAY39809.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972932|gb|EGH72998.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|94311420|ref|YP_584630.1| succinate dehydrogenase flavoprotein subunit [Cupriavidus
          metallidurans CH34]
 gi|93355272|gb|ABF09361.1| succinate dehydrogenase, flavoprotein subunit [Cupriavidus
          metallidurans CH34]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G + A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLNVAVLS 42


>gi|30262452|ref|NP_844829.1| hypothetical protein BA_2453 [Bacillus anthracis str. Ames]
 gi|47527744|ref|YP_019093.1| hypothetical protein GBAA_2453 [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49185293|ref|YP_028545.1| hypothetical protein BAS2284 [Bacillus anthracis str. Sterne]
 gi|65319747|ref|ZP_00392706.1| COG1233: Phytoene dehydrogenase and related proteins [Bacillus
          anthracis str. A2012]
 gi|165868366|ref|ZP_02213026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167641364|ref|ZP_02399615.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170704719|ref|ZP_02895185.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177649359|ref|ZP_02932361.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190565602|ref|ZP_03018522.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227814738|ref|YP_002814747.1| hypothetical protein BAMEG_2148 [Bacillus anthracis str. CDC 684]
 gi|229601185|ref|YP_002866778.1| hypothetical protein BAA_2510 [Bacillus anthracis str. A0248]
 gi|254737477|ref|ZP_05195180.1| hypothetical protein BantWNA_20169 [Bacillus anthracis str.
          Western North America USA6153]
 gi|254751792|ref|ZP_05203829.1| hypothetical protein BantV_04976 [Bacillus anthracis str. Vollum]
 gi|254760311|ref|ZP_05212335.1| hypothetical protein BantA9_18526 [Bacillus anthracis str.
          Australia 94]
 gi|30257083|gb|AAP26315.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47502892|gb|AAT31568.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49179220|gb|AAT54596.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164715092|gb|EDR20609.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167510641|gb|EDR86036.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170130520|gb|EDS99381.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|172084433|gb|EDT69491.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190563629|gb|EDV17594.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227003019|gb|ACP12762.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229265593|gb|ACQ47230.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KNFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|299134556|ref|ZP_07027748.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Afipia sp. 1NLS2]
 gi|298590366|gb|EFI50569.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Afipia sp. 1NLS2]
          Length = 460

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 17/141 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+GGG  G  AA  AA+ G S  L        GS+  N  +G     +       L 
Sbjct: 18  DIVVVGGGTTGPLAAIAAARQGKSVVL----IERFGSLGGNLTLGL----NTKPSGSLLG 69

Query: 67  GL------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           GL      + R   AAG  +       G  +  P    D E+ ++ + R         + 
Sbjct: 70  GLPLEIWNLARSTGAAGDDYIAKTKTGGVTIASP---CDPEIMKMLLTRLCADAGVQILF 126

Query: 121 QGEVAGFNTEKNIISSIVMQD 141
           +  V+    E N I  +V+++
Sbjct: 127 ETLVSRPVMEGNTIIGVVVEN 147


>gi|257875447|ref|ZP_05655100.1| thioredoxin reductase [Enterococcus casseliflavus EC20]
 gi|257809613|gb|EEV38433.1| thioredoxin reductase [Enterococcus casseliflavus EC20]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 80/260 (30%), Gaps = 46/260 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI+IG G AG  AA  A++   S  +I                          E  A 
Sbjct: 2   YDVIIIGAGPAGMTAALYASRSNLSVLMI--------------------------ERGAP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL--DVI-QG 122
            G M   A+       V N     ++ GP      ++Y  A++  + +   +   +  QG
Sbjct: 36  GGQMNNTAE-------VENYPGFESILGPELAF--KMYEGAIKFGVENAYGIVQSITDQG 86

Query: 123 EVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           E     TE        +++    + R   V        RGV +         R       
Sbjct: 87  EFKEVATEDKTYQGKTVIIATGCVHRKLGVKGEEEFAGRGVSYCAVCDGAFFRNKRLIVV 146

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-----N 235
              +S ++      +  +          +   K   Q         SF+ D +      N
Sbjct: 147 GGGDSAVEEAIYLTQFASEVTIVHRRDELRAQKI-IQDRAFANEKISFIWDSVVEEIKGN 205

Query: 236 RQIECGITRTNLETHRIIME 255
             +  G+   N++T  +  E
Sbjct: 206 EMVVTGVQIRNVKTDEVTEE 225


>gi|242280459|ref|YP_002992588.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio salexigens DSM 2638]
 gi|242123353|gb|ACS81049.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVR 60
            RSYD++V+G G  G +AA  AA+ G   AL+  +    T  ++ C P    LG    V 
Sbjct: 10  TRSYDLVVVGAGPGGFDAALEAAEEGIKVALVEKELLGGTCLNVGCIPTKMYLGATSPVE 69

Query: 61  EIDALDGLMGRVAD-AAGIQFRVLNVKKGPAVRGPR 95
           E+ A      RVA     I F+ L  KK   +   R
Sbjct: 70  ELAAQS--KARVAKGEIEIDFKALCTKKDRFIAATR 103


>gi|168334789|ref|ZP_02692915.1| HI0933 family protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 412

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 131/438 (29%), Gaps = 81/438 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           Y  IV+G G AG  AA   ++ G ST ++         +     + G G+ +     D  
Sbjct: 3   YKAIVVGAGPAGLFAAYNLSEYGLSTLVLEKNI----QLGRKLLVSGSGQCNFTHAGDLE 58

Query: 66  DGLMGRVADAAGIQF----RVLNV------KKGPAVRGPRTQADRELYRLAMQREILSQE 115
                   D  G  F      LNV       K     G   +           R   S +
Sbjct: 59  -----EFKDKYGDNFNFIKHALNVFTNKDSIKFFKAYGVDIEVTSSGKVFPSSRN--STD 111

Query: 116 NLDV-----------IQGEVA-GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
            LD            IQ  V      E + +  +   D        +++ TG    G   
Sbjct: 112 ILDALVRSCKLNGAQIQSGVEINAILEYDGVFQVSTTDGDFFSTENLIIATG----GTSF 167

Query: 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ---FAD 220
           +       G       N           +   ++T   A           T         
Sbjct: 168 MHLGNDGFGYAIAQQFNHKVTKLRPSISNIISVETDYAAISGVSFKNVTMTIWHNEKKVR 227

Query: 221 ERLIPFSFMTDKITNRQIEC---GITRTNLETHRIIMENIK-HSAIYSGDIKSYG----- 271
           +++    F  + ++   +      I   +L T  ++ +  +        D+ ++G     
Sbjct: 228 DKVGDLLFTHNGVSGPVVLNSTRWIEAGDLVTFNLVNKPYEVVQKELEQDLIAFGKDSIG 287

Query: 272 --------PRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFI 323
                   PR   ++   I+     + H   +  E       Y     T LP  +     
Sbjct: 288 LYLRKFAFPRSFIAVLLSILSIPA-DLHCANISRENRKKIATYM----TKLPINVA---- 338

Query: 324 RTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQI----NGTTGY--E 376
            ++  L    +   G       ++ KEL P TLE++K  GL+  G++      T GY  +
Sbjct: 339 -SVGDLNSAVVTCGG-------VSLKELNPTTLESRKQRGLYFIGEVIDIDADTGGYNIQ 390

Query: 377 EAAAQGLVAGINSARKSN 394
            A + G V   +  RK  
Sbjct: 391 AAMSMGCVCANSIIRKEQ 408


>gi|153954190|ref|YP_001394955.1| hypothetical protein CKL_1565 [Clostridium kluyveri DSM 555]
 gi|219854798|ref|YP_002471920.1| hypothetical protein CKR_1455 [Clostridium kluyveri NBRC 12016]
 gi|146347071|gb|EDK33607.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219568522|dbj|BAH06506.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 412

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIVIGGG +G  AA  AA  G  T L+         +     I G G+ ++    D
Sbjct: 4  VIVIGGGPSGMMAAITAANRGFDTTLV----EKNEKLGKKMFISGKGRCNITNSKD 55


>gi|49258301|pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In Complex With The Inhibitor Quinacrine
          Mustard
 gi|49258302|pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In Complex With The Inhibitor Quinacrine
          Mustard
 gi|624038|emb|CAA78360.1| trypanothione reductase [Trypanosoma cruzi]
          Length = 492

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          M+++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MMSKIFDLVVIGAGSGGLEAAWNAATLYKK 30


>gi|136620|sp|P28593|TYTR_TRYCR RecName: Full=Trypanothione reductase; Short=TR; AltName:
          Full=N(1),N(8)-bis(glutathionyl)spermidine reductase
 gi|162317|gb|AAA63547.1| trypanothione reductase [Trypanosoma cruzi]
          Length = 492

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          M+++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MMSKIFDLVVIGAGSGGLEAAWNAATLYKK 30


>gi|71405339|ref|XP_805296.1| trypanothione reductase [Trypanosoma cruzi strain CL Brener]
 gi|70868650|gb|EAN83445.1| trypanothione reductase, putative [Trypanosoma cruzi]
          Length = 492

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          M+++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MMSKIFDLVVIGAGSGGLEAAWNAATLYKK 30


>gi|328676779|gb|AEB27649.1| L-aspartate oxidase [Francisella cf. novicida Fx1]
          Length = 495

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKDDKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|303257077|ref|ZP_07343091.1| fumarate reductase flavoprotein subunit [Burkholderiales
          bacterium 1_1_47]
 gi|302860568|gb|EFL83645.1| fumarate reductase flavoprotein subunit [Burkholderiales
          bacterium 1_1_47]
          Length = 510

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + +DVIVIG G AG  AA  A++ GA   L+  K   +G
Sbjct: 31 LGQQWDVIVIGSGLAGLSAALSASENGADRILVIEKLPVLG 71


>gi|300691093|ref|YP_003752088.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Ralstonia solanacearum PSI07]
 gi|299078153|emb|CBJ50796.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Ralstonia solanacearum PSI07]
          Length = 592

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGAGMRASLQLAEAGLSVAVLS 42


>gi|293400586|ref|ZP_06644731.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305612|gb|EFE46856.1| NADH:flavin oxidoreductase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 664

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  +V+VIGGG AG EAA  AA++G +T LI
Sbjct: 379 VKKPCNVVVIGGGTAGLEAACTAAEVGCTTFLI 411


>gi|172041520|ref|YP_001801234.1| dihydrolipoamide dehydrogenase [Corynebacterium urealyticum DSM
          7109]
 gi|171852824|emb|CAQ05800.1| dihydrolipoamide dehydrogenase [Corynebacterium urealyticum DSM
          7109]
          Length = 474

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDV+VIG G  G  AA  AA+LG  TA++
Sbjct: 1  MAEHYDVVVIGAGPGGYVAAIRAAQLGLKTAVV 33


>gi|332526162|ref|ZP_08402297.1| succinate dehydrogenase subunit A [Rubrivivax benzoatilyticus
          JA2]
 gi|332110002|gb|EGJ10630.1| succinate dehydrogenase subunit A [Rubrivivax benzoatilyticus
          JA2]
          Length = 597

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 8  KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 40


>gi|332528252|ref|ZP_08404257.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Hylemonella gracilis ATCC 19624]
 gi|332042272|gb|EGI78593.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Hylemonella gracilis ATCC 19624]
          Length = 602

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 10 KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 42


>gi|319792254|ref|YP_004153894.1| succinate dehydrogenase, flavoprotein subunit [Variovorax
          paradoxus EPS]
 gi|315594717|gb|ADU35783.1| succinate dehydrogenase, flavoprotein subunit [Variovorax
          paradoxus EPS]
          Length = 602

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 10 KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 42


>gi|239945034|ref|ZP_04696971.1| FAD dependent oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|239991496|ref|ZP_04712160.1| FAD dependent oxidoreductase [Streptomyces roseosporus NRRL 11379]
          Length = 393

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 20/306 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YD+ VIGGG  G  +A  AA+ G   A+      + G+  C  +           E 
Sbjct: 4   TEHYDIAVIGGGPVGLASAWHAARRGERVAVFEQF--SFGNEQCGTSGAERHWRLQYTEP 61

Query: 63  DAL---DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           D        +    +        L    G    G    A  E    A  R +   ++L +
Sbjct: 62  DLCRLTGEALPLWRELERATGHQLLHAFGSLWFGDIDVATNEGRISATARTM---DDLSI 118

Query: 120 IQGEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
               +   + E +   + +       ++     +     + G++ + +    A R  +  
Sbjct: 119 PYEWLTAADIERRYGFTGLPGHFEGFVQPDGGAVDVRATVEGLLRLTEEAGCALRAHEPV 178

Query: 179 SNSLFNSF-MKFDFDTGRLKTGTPARLDGKTIIW------DKTEKQFADERLIPFSFMTD 231
              + +S  +      GR + G     +G            + + Q  +  L+       
Sbjct: 179 LELIPDSDGVTLRTAHGRCRAGKVVVANGAYANRLLEPLGSRLDLQVFEMALVTLRQRDP 238

Query: 232 KITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF--GERN 289
           K+           T  +T+  +      +A    D    GP +  +      R       
Sbjct: 239 KVRYPFWFVFQEPTEEDTN--LFYGFPPNAWQDTDTVRVGPVFEVNALADPARATGAPDP 296

Query: 290 GHQIFL 295
            H   +
Sbjct: 297 RHVARM 302


>gi|221124364|ref|XP_002163049.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
          flavoprotein subunit, mitochondrial [Hydra
          magnipapillata]
 gi|260220784|emb|CBA28694.1| Succinate dehydrogenase flavoprotein subunit [Curvibacter
          putative symbiont of Hydra magnipapillata]
          Length = 596

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 7  KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 39


>gi|239814435|ref|YP_002943345.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Variovorax paradoxus S110]
 gi|239801012|gb|ACS18079.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Variovorax paradoxus S110]
          Length = 602

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 10 KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 42


>gi|238495931|ref|XP_002379201.1| monooxygenase, putative [Aspergillus flavus NRRL3357]
 gi|220694081|gb|EED50425.1| monooxygenase, putative [Aspergillus flavus NRRL3357]
          Length = 639

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+++G G AG  AA   A+ G  T ++             P   G   G   R I+ LD
Sbjct: 4  DVLIVGAGPAGLMAALWMARAGVRTLVVDRN--------SGPTEAGHADGLESRTIEILD 55

Query: 67 G 67
           
Sbjct: 56 S 56


>gi|126740980|ref|ZP_01756663.1| Dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
 gi|126717906|gb|EBA14625.1| Dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
          Length = 460

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLGKGH 57
           +YD+IVIGGG  G  AA  AA+LG   A +  + +       +G +     +   GK  
Sbjct: 2  ENYDLIVIGGGPGGYVAAIRAAQLGLKVACVEGRGALGGTCLNVGCIPSKALLTSSGKFA 61

Query: 58 LVREIDALD-GLMGRVADAAGIQFR----VLNVKKGPA 90
           +  + A    + G   D   +  R    V ++ KG A
Sbjct: 62 ELSHLAAHGVSVEGASVDVPAMMARKDKVVGDLTKGIA 99


>gi|114776797|ref|ZP_01451840.1| hypothetical protein SPV1_11296 [Mariprofundus ferrooxydans PV-1]
 gi|114552883|gb|EAU55314.1| hypothetical protein SPV1_11296 [Mariprofundus ferrooxydans PV-1]
          Length = 396

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH------KTSTIGSMSCN--PAIGGLGKG 56
          ++DVI+IG G AG   A  AA +G S  ++ H      K    G   CN      G    
Sbjct: 3  TFDVIIIGAGAAGLMCAGTAALMGKSVLVLDHAEKAGKKILISGGGRCNFTNRFAGPADF 62

Query: 57 HLVR 60
            V 
Sbjct: 63 VSVN 66


>gi|91789453|ref|YP_550405.1| succinate dehydrogenase subunit A [Polaromonas sp. JS666]
 gi|91698678|gb|ABE45507.1| succinate dehydrogenase subunit A [Polaromonas sp. JS666]
          Length = 598

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 9  KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 41


>gi|169775419|ref|XP_001822177.1| FAD binding domain protein [Aspergillus oryzae RIB40]
 gi|83770040|dbj|BAE60175.1| unnamed protein product [Aspergillus oryzae]
          Length = 625

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+++G G AG  AA   A+ G  T ++             P   G   G   R I+ LD
Sbjct: 4  DVLIVGAGPAGLMAALWMARAGVRTLVVDRN--------SGPTEAGHADGLESRTIEILD 55

Query: 67 G 67
           
Sbjct: 56 S 56


>gi|121605925|ref|YP_983254.1| succinate dehydrogenase, flavoprotein subunit [Polaromonas
          naphthalenivorans CJ2]
 gi|120594894|gb|ABM38333.1| succinate dehydrogenase subunit A [Polaromonas naphthalenivorans
          CJ2]
          Length = 597

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 9  KRKFDVVIVGAGGSGMRASLQLARAGLNVAVLS 41


>gi|320173291|gb|EFW48497.1| putative electron transfer flavoprotein-quinone oxidoreductase
          FixC [Shigella dysenteriae CDC 74-1112]
          Length = 429

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G   AG  AA V A+ G    +         S  C    GG    H + 
Sbjct: 1  MSDDKFDAIVVGADVAGSVAALVMARAGLDVLV----IERGDSAGCKNMTGGRLYAHTLE 56

Query: 61 EI 62
           I
Sbjct: 57 AI 58


>gi|304314069|ref|YP_003849216.1| dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587528|gb|ADL57903.1| predicted dehydrogenase [Methanothermobacter marburgensis str.
          Marburg]
          Length = 385

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           YD++V+GG  AG  AA  AAK G    ++         + C
Sbjct: 2  KYDLVVVGGRVAGSIAAYHAAKNGLHVLMLEGNPEIGTPVQC 43


>gi|269961562|ref|ZP_06175924.1| visC protein, putative [Vibrio harveyi 1DA3]
 gi|269833603|gb|EEZ87700.1| visC protein, putative [Vibrio harveyi 1DA3]
          Length = 391

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREI 62
             YD+ VIGGG  G   A   AK G S  ++          S    I      H  V+ +
Sbjct: 2   NKYDIAVIGGGMVGAAVAVGFAKQGRSVVVVEGAEPKAFEASQALDIRVSAISHQSVKLL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR------------ELYRLAMQRE 110
           D+L       +      +R L   + P  R  R  +D              L +L + + 
Sbjct: 62  DSLGAWSAIESMRV-CPYRRLETWEHPECR-TRFHSDELSLEQLGYIVENRLIQLGLWQT 119

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               +NL V+  E    + E   ++ + ++       S V+   G   +
Sbjct: 120 FAQYDNLTVMCPERLK-DIEFAEVNCVTLESGEQFEASWVIGADGANSK 167


>gi|255037743|ref|YP_003088364.1| dihydrolipoamide dehydrogenase [Dyadobacter fermentans DSM 18053]
 gi|254950499|gb|ACT95199.1| dihydrolipoamide dehydrogenase [Dyadobacter fermentans DSM 18053]
          Length = 465

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
          + ++YDVIVIG G  G  AA  A++LG   A++     ++G +     C P    L    
Sbjct: 1  MAQTYDVIVIGSGPGGYPAAIRASQLGLKVAIVE--KESLGGICLNWGCIPTKALLKSAQ 58

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
          +   I          A+ +     V+   +G A
Sbjct: 59 VFEYIKHAKDYGINAAEYSADFGAVIKRSRGVA 91


>gi|225562119|gb|EEH10399.1| squalene epoxidase [Ajellomyces capsulatus G186AR]
          Length = 484

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLGK 55
           +   DV+++G G AGC  A    K G S  L+     +   I      P    A+  LG 
Sbjct: 31  DHEADVVIVGAGIAGCALAVALGKQGRSVLLLERWLKEPDRIVGELLQPGGVRALDQLGL 90

Query: 56  GHLVREIDALDGLMGRVADAAG-IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            H + +IDA++     V      +  R    ++G   +G      R  + + ++    + 
Sbjct: 91  KHCLEDIDAVECHGMDVIYHGNEVPIRYPMDEQGSPFKGRSFHHGR--FIMRLRESARAT 148

Query: 115 ENLDVIQGEVAGFNTE--KNIISSIV-MQDNSM--IRCSTVVLTTGTFLRGV 161
            N+ +++            N +  +    +            +  G   +  
Sbjct: 149 PNVTIVETTAVSVIHSSTDNEVLGVQCTTNGQKDYFYAPLTFIADGYASKFR 200


>gi|118444277|ref|YP_878535.1| 2,4-dienoyl-CoA reductase [Clostridium novyi NT]
 gi|118134733|gb|ABK61777.1| 2,4-dienoyl-CoA reductase, putative [Clostridium novyi NT]
          Length = 667

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +V++IGGG AGCEAA V A  G   +L   KT  +G
Sbjct: 407 NVLIIGGGVAGCEAARVCAIRGHKVSLYE-KTDKLG 441


>gi|88856747|ref|ZP_01131402.1| pyridine nucleotide-disulfide oxidoreductase [marine
           actinobacterium PHSC20C1]
 gi|88814044|gb|EAR23911.1| pyridine nucleotide-disulfide oxidoreductase [marine
           actinobacterium PHSC20C1]
          Length = 301

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 45/153 (29%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVREID 63
            +DV+++GGG AG  AA   A+    T ++         +   +  +   G   L  E+ 
Sbjct: 6   DWDVVIVGGGPAGLSAALNLARARRRTLVLDSNRPRNSATFHSHGFLSRDGISPL--ELR 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +                                          + E+    N+   +  
Sbjct: 64  KMG-----------------------------------------REELEQYPNVSFERTI 82

Query: 124 VAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTG 155
           V       +  S   V      +    V++ TG
Sbjct: 83  VESIEPLASAGSGFTVTHRGGAVTTRAVLIATG 115


>gi|119384139|ref|YP_915195.1| FAD dependent oxidoreductase [Paracoccus denitrificans PD1222]
 gi|119373906|gb|ABL69499.1| gamma-glutamylputrescine oxidase [Paracoccus denitrificans PD1222]
          Length = 436

 Score = 43.8 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G+ G  AA   A+ G    ++       G+   N    G G+   V +++++ 
Sbjct: 38  DVVVVGAGYTGLSAALHLAEAGRDVVVLEAHRVGFGASGRNGGQLGSGQRLEVDDLESMA 97

Query: 67  GL-----MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G+     +  +A+ A    R L  + G +V      A R+
Sbjct: 98  GVETAHRLWDMAEEAKRLTRDLAARAGVSVADGIAHAFRK 137


>gi|323693547|ref|ZP_08107751.1| hypothetical protein HMPREF9475_02614 [Clostridium symbiosum
          WAL-14673]
 gi|323502402|gb|EGB18260.1| hypothetical protein HMPREF9475_02614 [Clostridium symbiosum
          WAL-14673]
          Length = 193

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + YDVI++GGG AG  AA   A+      +   +   IG
Sbjct: 1  MEQFYDVIIVGGGPAGLSAAIYMARARYKVLV--MEKEKIG 39


>gi|319400424|gb|EFV88658.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis FRI909]
          Length = 450

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
           +++SYD+IVIG G  G  AA   A+LG + A+I    +      +G +     +    K 
Sbjct: 1   MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H +R  +   G+  +       QF     K    + G   Q  ++     ++ E    +N
Sbjct: 61  HNIRVANDW-GITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVAYIEGEARISKN 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV-------VLTTGTFLRGVIHIGKLKI 169
           L V        N E      I++   S      +         TT TF        +L +
Sbjct: 120 LKV------DVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAV 173

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL 204
             G +  +    L +S          ++      L
Sbjct: 174 IGGGVIATE---LASSMADLGVRVTIIEVADDILL 205


>gi|307328635|ref|ZP_07607808.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Streptomyces violaceusniger Tu 4113]
 gi|306885747|gb|EFN16760.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Streptomyces violaceusniger Tu 4113]
          Length = 928

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA  AA+ G+S  L+
Sbjct: 21 DVLVIGGGTAGTMAALTAAEHGSSVLLL 48


>gi|294666452|ref|ZP_06731695.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603758|gb|EFF47166.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 393

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  M                    A   P    +  E + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFMSANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNS 143
             ++     ++   + + ++   
Sbjct: 108 SKQIVRMLLDECDAAGVQIRTQC 130


>gi|302882819|ref|XP_003040315.1| hypothetical protein NECHADRAFT_82319 [Nectria haematococca mpVI
           77-13-4]
 gi|256721192|gb|EEU34602.1| hypothetical protein NECHADRAFT_82319 [Nectria haematococca mpVI
           77-13-4]
          Length = 526

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           I +  DVIVIG G AG  A+  AA+ GAS  L+
Sbjct: 87  IKQKPDVIVIGSGIAGLSASIAAAEKGASVLLL 119


>gi|302524227|ref|ZP_07276569.1| dihydrolipoyl dehydrogenase [Streptomyces sp. AA4]
 gi|302433122|gb|EFL04938.1| dihydrolipoyl dehydrogenase [Streptomyces sp. AA4]
          Length = 467

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLGKGHLV 59
           ++++GGG AG EAA VAA+ GA   ++              + S +   + G L K H +
Sbjct: 4   IVIMGGGPAGYEAALVAAQHGADVTIVERDGLGGACVLYDCVPSKTFIASSGALAKMHDL 63

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP---RTQADRELYR--LAMQREILSQ 114
            E+     L     D   +  RV    KG A+      R +  RE  R   A  R    +
Sbjct: 64  GELGINTDLADTTVDLPTVHGRV----KGLALAQSADIRARVQREGVRVITAEARFADDE 119

Query: 115 ENLDVIQGEVA--GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
             L     EV       E      +++   +  R     +  G  +
Sbjct: 120 PGLATHTVEVTHSDGKVESLSADVVLIATGATPRVLPGAVPDGERI 165


>gi|256371609|ref|YP_003109433.1| monooxygenase FAD-binding [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008193|gb|ACU53760.1| monooxygenase FAD-binding [Acidimicrobium ferrooxidans DSM 10331]
          Length = 525

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 20/183 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + R++ V ++GGG  G   A   A+ G S+ ++       G        G          
Sbjct: 1   MTRAWPVAIVGGGPVGLTLALCLARQGVSSVILERNDGATGE-------GSRAICQQRDV 53

Query: 62  IDALDGLMGRVADAAGI------------QFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
           +D  D +        G+            + R + +        P      +L   ++ R
Sbjct: 54  LDTWDAVGASAIWREGLTWSRGRTYVRDREVRTVELADVGRSELPAFVNISQLRVESILR 113

Query: 110 EILSQ-ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            ++++   + +  G  A    + +    +V     ++  + V +  G    G+     ++
Sbjct: 114 ALVAERPMITLRTGFCATSIVDDDAGVRVVGSRGEVVEAAWVAVCAGAHADGLRRALGVE 173

Query: 169 IPA 171
           +  
Sbjct: 174 LAG 176


>gi|221128955|ref|XP_002161247.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 624

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 93/311 (29%), Gaps = 49/311 (15%)

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLK 168
            I       + +  V GF  E   ++ + +   S  I    +V   G      I     K
Sbjct: 324 VIEKTGGKVLTKASVVGFVIEDGRVTGVKIDGKSEPIHAPVIVSAIGFINTFSILPENYK 383

Query: 169 I---------PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG---KTIIWDKTEK 216
           I          +G    S    L  S  + +         T    D    + +   K + 
Sbjct: 384 IGFTDVLRKVKSGHGAISIFVGLDGSNEELNLQATNTWAFTNTDFDKSLDEYLALPKEQA 443

Query: 217 QFADERLIPFSF-------MTDKITNRQIECGITRTNLE-THRIIMENIKHSAIYSGDIK 268
              D  L+  SF         ++   +     +T  N E   +   E  K       +IK
Sbjct: 444 GLKDIPLLFISFPSSKDPSWNERYPGKSNCTIVTLANWEWFGQWENEKKKKRGKEYEEIK 503

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG 328
           +     C   E  ++ + +    +++ E     T+  Y                     G
Sbjct: 504 TRIAERC--WEQTLLYYPQLRNRRVYFEVGTPVTNKYYL--------------------G 541

Query: 329 LEKVNIIRPGYAIEYDYINPKELFPTLE-TKKISGLFLAGQ-INGTTGYEEAAAQGLVAG 386
             K  I   G     D  +P E+   L    KI GLFL GQ I  T G+  A   GL+  
Sbjct: 542 SNKGEI--YGLDHSLDRFDP-EIIAKLRPCTKIPGLFLTGQDIT-TAGFAGALYSGLLTA 597

Query: 387 INSARKSNKLD 397
                ++   D
Sbjct: 598 SAVLNRNLAND 608


>gi|218885505|ref|YP_002434826.1| thioredoxin-disulfide reductase [Desulfovibrio vulgaris str.
          'Miyazaki F']
 gi|218756459|gb|ACL07358.1| Thioredoxin-disulfide reductase [Desulfovibrio vulgaris str.
          'Miyazaki F']
          Length = 307

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          ++YD IVIGGG AG  AA    + G S A
Sbjct: 2  KTYDAIVIGGGPAGMTAALYLLRSGVSVA 30


>gi|164688574|ref|ZP_02212602.1| hypothetical protein CLOBAR_02219 [Clostridium bartlettii DSM
           16795]
 gi|164602987|gb|EDQ96452.1| hypothetical protein CLOBAR_02219 [Clostridium bartlettii DSM
           16795]
          Length = 670

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + +   V+VIG G AG EAA  AA++G +T L+  K
Sbjct: 380 VKKHCSVVVIGAGTAGLEAACTAAEVGCTTFLLEKK 415


>gi|296112302|ref|YP_003626240.1| pyruvate dehydrogenase E3 component (dihydrolipoamide
          dehydrogenase) [Moraxella catarrhalis RH4]
 gi|295919996|gb|ADG60347.1| pyruvate dehydrogenase E3 component (dihydrolipoamide
          dehydrogenase) [Moraxella catarrhalis RH4]
 gi|326563246|gb|EGE13513.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 46P47B1]
 gi|326563360|gb|EGE13625.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 12P80B1]
 gi|326565898|gb|EGE16059.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 103P14B1]
 gi|326571940|gb|EGE21945.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC8]
 gi|326575452|gb|EGE25377.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 101P30B1]
 gi|326576460|gb|EGE26368.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis CO72]
 gi|326577931|gb|EGE27795.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis O35E]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD++VIGGG  G EAA   A+LG S A I  K    G     PA+GG 
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIE-KRVHKGE----PALGGT 47


>gi|270262675|ref|ZP_06190946.1| hypothetical protein SOD_c02960 [Serratia odorifera 4Rx13]
 gi|270043359|gb|EFA16452.1| hypothetical protein SOD_c02960 [Serratia odorifera 4Rx13]
          Length = 176

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGKG 56
          ++  YDV+VIGGG  G  AA  A +LG  TAL+       I    G +     + G    
Sbjct: 1  MHDKYDVLVIGGGPGGYVAAIRAGQLGLRTALVEKQHLGGICLNWGCIPTKALLHGADVA 60

Query: 57 HLVREIDALDGLMGRVA 73
          H +   D L   +G V+
Sbjct: 61 HSIAHADQLGFSVGEVS 77


>gi|255263398|ref|ZP_05342740.1| geranylgeranyl hydrogenase [Thalassiobium sp. R2A62]
 gi|255105733|gb|EET48407.1| geranylgeranyl hydrogenase [Thalassiobium sp. R2A62]
          Length = 392

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIVIGGG +G  AA   A+ G   A+I
Sbjct: 2  YDVIVIGGGPSGATAAQDLARSGHKVAMI 30


>gi|254525425|ref|ZP_05137477.1| geranylgeranyl reductase [Prochlorococcus marinus str. MIT 9202]
 gi|221536849|gb|EEE39302.1| geranylgeranyl reductase [Prochlorococcus marinus str. MIT 9202]
          Length = 446

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWLFERKLD--NAKPC----GGAIPLCMVDEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRHMRMISPS 72


>gi|254508282|ref|ZP_05120405.1| conserved hypothetical protein TIGR00275 [Vibrio parahaemolyticus
          16]
 gi|219548799|gb|EED25801.1| conserved hypothetical protein TIGR00275 [Vibrio parahaemolyticus
          16]
          Length = 400

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++   +DV++IG G AG   AA A K G S  L+ H
Sbjct: 3  IMAEKFDVVIIGAGAAGLMCAAEAGKRGRSVLLLDH 38


>gi|205374383|ref|ZP_03227181.1| succinate dehydrogenase flavoprotein subunit [Bacillus coahuilensis
           m4-4]
          Length = 587

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 73/224 (32%), Gaps = 42/224 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKAAESGTQVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMTEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                  Q+ L  +  +V      ++ ++ +V +        TV+   G   RGVI    
Sbjct: 126 FAGATTGQQLLYALDEQV-----RRHEVAGLVTKYEGWEFLGTVIDDEGV-ARGVIAQDL 179

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
             +                F  F  D   + TG P  + GK+  
Sbjct: 180 KTME---------------FRAFPADAVIMATGGPGIIFGKSTN 208


>gi|163814097|ref|ZP_02205489.1| hypothetical protein COPEUT_00250 [Coprococcus eutactus ATCC 27759]
 gi|158450546|gb|EDP27541.1| hypothetical protein COPEUT_00250 [Coprococcus eutactus ATCC 27759]
          Length = 414

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 76/434 (17%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIGGG AG  AA  A +      ++    +    +       G G+ ++      L
Sbjct: 3   YDTIVIGGGPAGMTAAIKAKETCEKAKILIIDRNKK--LGKKLYATGNGRCNIANSALDL 60

Query: 66  DGLMG--------RVADAAGIQFRVLNVKKGPAVRGPRT----QADRELYRLAMQREILS 113
                         +   +  + +   +  G A+         Q+ +    +    + + 
Sbjct: 61  SSYHSCNEFFPYQIINTESYKKLKEFFMDLGVAIYDDGGYLYPQSMQASTVVWALSDRIK 120

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
              +++   E A      + +  IV  D +     TVV   G+     +   +       
Sbjct: 121 HLGIEIHTTEEAESVEPTDEMYGIVT-DCAEYTARTVVAAPGSAAAPKLGGTESVYRLLE 179

Query: 174 MGD----SPSNSLFNSFMKFDFDTGRLKTGTPARL----DGKTIIWDKTEKQFADERLIP 225
             D    +P  +L       +  +         R+    DG     +  E QFAD     
Sbjct: 180 NTDIRTIAPHPALC-RLKTREDTSDLAGVRARCRVSLLCDGDVYDSESGEIQFAD----- 233

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV-- 283
                          GI   NL    I + N   + +    +           ED ++  
Sbjct: 234 -----------GWLSGIAVFNLSMQCIDLLNDGRTPVVEVTLV------PEMDEDDVLGY 276

Query: 284 --RFGERNGHQIFLEPEGLNTDVVY-------PNGI------STALPEEIQHQFIRTIPG 328
             +F + N        E ++  +V         N +      +  L +E   + +  I  
Sbjct: 277 LRKFRDSNPD---RRLEAMSNGLVNEKIARFIINRLELKSVTAARLTDEELDRMVFEIKH 333

Query: 329 LEKVNIIRPGYAIEYDY---INPKELFP-TLETKKISGLFLAGQINGTTGYEE------A 378
           +        GY         I+ ++L P ++E     GL++AG+    TG         A
Sbjct: 334 MRFEISGHGGYDESQAACGGIDTRQLRPDSMEADGYKGLYVAGEYADVTGKCGGYNIMWA 393

Query: 379 AAQGLVAGINSARK 392
              G+ AG  + ++
Sbjct: 394 VMTGMRAGEAAGKR 407


>gi|145221544|ref|YP_001132222.1| lycopene cyclase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145214030|gb|ABP43434.1| lycopene cyclase (CrtL-type) [Mycobacterium gilvum PYR-GCK]
          Length = 401

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          DV+V+G G AG   A   A+ G +TA++      
Sbjct: 5  DVLVVGAGPAGLAVAGACARRGLATAVLDPGPDR 38


>gi|124267088|ref|YP_001021092.1| oxidoreductase [Methylibium petroleiphilum PM1]
 gi|124259863|gb|ABM94857.1| oxidoreductase [Methylibium petroleiphilum PM1]
          Length = 449

 Score = 43.8 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG AG  AA   A  G +  L+  +    G+   N      G      EI+A  
Sbjct: 36 DVAVVGGGLAGLSAAIELADRGFNVVLLEARQIGWGASGRNGGQAIHGLACDQSEIEAQL 95

Query: 67 GL 68
          GL
Sbjct: 96 GL 97


>gi|327330464|gb|EGE72213.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL097PA1]
          Length = 467

 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +++ T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAAGSIIKTLPGTQLSGRVVTYKEQILS 169


>gi|325661505|ref|ZP_08150130.1| hypothetical protein HMPREF0490_00864 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472221|gb|EGC75434.1| hypothetical protein HMPREF0490_00864 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 658

 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           V+VIGGG AG EAA VA K G    L   K+ ++G +    A+  + K  L + I  +
Sbjct: 383 VLVIGGGPAGMEAAFVAKKRGHEVVLCE-KSDSLGGLVKLAAV-PIAKQELTKVIQYM 438


>gi|303245509|ref|ZP_07331793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
 gi|302493358|gb|EFL53220.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
          Length = 309

 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD +VIGGG AG  AA   A+   S A++
Sbjct: 2  KRYDAVVIGGGPAGITAALYLARSDVSVAMV 32


>gi|303247130|ref|ZP_07333405.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
 gi|302491556|gb|EFL51441.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
          Length = 674

 Score = 43.8 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+V+GGG AG +AA   AK G    L+    S  G M
Sbjct: 143 DVLVVGGGIAGIQAALDIAKSGHRVHLVERSPSIGGHM 180


>gi|325686935|gb|EGD28959.1| thioredoxin reductase [Streptococcus sanguinis SK72]
          Length = 304

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  AA  AA+     A++
Sbjct: 2  YDTIIIGAGPAGMTAALYAARSNLKVAML 30


>gi|320530463|ref|ZP_08031521.1| putative thioredoxin-disulfide reductase [Selenomonas artemidis
          F0399]
 gi|320137296|gb|EFW29220.1| putative thioredoxin-disulfide reductase [Selenomonas artemidis
          F0399]
          Length = 339

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1  MINRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M+ + +   D+I+IG G AG  AA  A ++   T ++ +  
Sbjct: 30 MMAKQHIEKDIIIIGAGMAGLTAALYAGRMNLRTLVLENSL 70


>gi|307325558|ref|ZP_07604759.1| FAD dependent oxidoreductase [Streptomyces violaceusniger Tu 4113]
 gi|306888686|gb|EFN19671.1| FAD dependent oxidoreductase [Streptomyces violaceusniger Tu 4113]
          Length = 502

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G AG   A    + G   A++               I     GH   ++ AL 
Sbjct: 26  DVAVVGAGIAGLSTAWELTRAGHRVAVLEADR-----------IAAGVTGHTTAKLTALH 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREI------------- 111
           GL+          +  L   +GP  A    R+Q+D     +A+  E+             
Sbjct: 75  GLI----------YDRLRRTRGPEGARMYARSQSDAVERAVAITAELGIDCDLEHVPAYT 124

Query: 112 --LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG---TFLRGVI--HI 164
                   D I+ EV     E  + +S V +       +  +   G      RG +    
Sbjct: 125 YTEDPARTDTIRAEV-DAAYEAGLPASYVTETGLPYPVAGAIRVEGGAQFHPRGYLLALA 183

Query: 165 GKLKIPAGRMGD 176
             L+   GR+ +
Sbjct: 184 EDLRAHGGRIHE 195


>gi|257459554|ref|ZP_05624663.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
 gi|257442979|gb|EEV18113.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
          Length = 516

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 42/185 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG------LGK 55
            +  YD+++IG G AG  AA  A+  G    +       +G    N  I G      + K
Sbjct: 38  FDEEYDIVIIGTGFAGLAAAIKASGRGKKVLV----LEKMGRAGGNSVINGGNMAAPMNK 93

Query: 56  GHLVREID----------ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL--- 102
             + + I             DGL     D  G+ F   N             +D+ +   
Sbjct: 94  FQVAQGIKDSKELFIADAVKDGLGLNHTDLLGVMFDRSNDAVDLLTSCGAEFSDKLIFES 153

Query: 103 -----------------YRLAMQREILSQENLDVI-QGEVAGFNTEKN-IISSIVMQDNS 143
                            Y   M  ++ +  N+ +  + +   F  + +  +  +  ++  
Sbjct: 154 GHSVARSLQSTNGSGSGYIQPMMGKLQNDPNVTIKTRTKFDDFIVDDSGRVVGVEAREEY 213

Query: 144 MIRCS 148
                
Sbjct: 214 KFDPK 218


>gi|325282282|ref|YP_004254823.1| dihydrolipoamide dehydrogenase [Deinococcus proteolyticus MRP]
 gi|324314091|gb|ADY25206.1| dihydrolipoamide dehydrogenase [Deinococcus proteolyticus MRP]
          Length = 466

 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  +DVIVIG G  G  AA  A +LG  TA++
Sbjct: 1  MANMDFDVIVIGAGPGGYHAAIRAGQLGLKTAIV 34


>gi|295090595|emb|CBK76702.1| Uncharacterized flavoproteins [Clostridium cf. saccharolyticum K10]
          Length = 847

 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 84/245 (34%), Gaps = 32/245 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  + + +VIGGG  G EAA    K G    ++      +G      A      G +++
Sbjct: 593 LLGHTRNAVVIGGGVLGLEAAWELKKAGLRVTVLEAAPMLMGRQLDATA------GTILK 646

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EI   +G+        G+    ++  +  AV G   Q+        +      + N  + 
Sbjct: 647 EIVEKNGISI----HTGVTIESIDADESGAVSGVTLQSGESFPAQLVIISAGVRANTALA 702

Query: 121 QGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM--GD 176
           +    G   E+ ++ +  M+    ++  C       G        I       GR+   +
Sbjct: 703 KEM--GLQVERAVVVNSHMETGLKNIYACGDCAEYKGANFA----IWPEASEQGRIAGAN 756

Query: 177 SPSNSL-----FNSFMKFDFDTGRLKTGT---PARLDGKTIIWDKTEKQFADERLIPFSF 228
           +  +SL      ++      +T     G       L  KT+ +         E+   + F
Sbjct: 757 AAGDSLEYREVSSALTFNGMNTSLYAAGDNGKNPNLLYKTVEFKDM----GKEQYRKYYF 812

Query: 229 MTDKI 233
           + +++
Sbjct: 813 LNNRL 817


>gi|293402328|ref|ZP_06646465.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304175|gb|EFE45427.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 308

 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          + YDVI+IGGG AG  AA  AA+  A + L+  K S  G M+  
Sbjct: 2  KLYDVIIIGGGPAGYSAALYAAR-NARSVLVIEKLSAGGQMATT 44


>gi|255280844|ref|ZP_05345399.1| putative alkyl hydroperoxide reductase F subunit [Bryantella
          formatexigens DSM 14469]
 gi|255268781|gb|EET61986.1| putative alkyl hydroperoxide reductase F subunit [Bryantella
          formatexigens DSM 14469]
          Length = 553

 Score = 43.8 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++   YDV+VIGGG AG  AA   A+      ++
Sbjct: 1  MADKKNLYDVVVIGGGPAGLTAALYLARARYRVVVV 36


>gi|326569264|gb|EGE19325.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC7]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD++VIGGG  G EAA   A+LG S A I  K    G     PA+GG 
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIE-KRVHKGE----PALGGT 47


>gi|326561810|gb|EGE12145.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis 7169]
 gi|326568965|gb|EGE19034.1| dihydrolipoamide dehydrogenase [Moraxella catarrhalis BC1]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD++VIGGG  G EAA   A+LG S A I  K    G     PA+GG 
Sbjct: 1  MKNSYDLVVIGGGPGGYEAAIRGAQLGFSVACIE-KRVHKGE----PALGGT 47


>gi|325569834|ref|ZP_08145828.1| thioredoxin reductase [Enterococcus casseliflavus ATCC 12755]
 gi|325156957|gb|EGC69125.1| thioredoxin reductase [Enterococcus casseliflavus ATCC 12755]
          Length = 329

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 21 YDVIIIGAGPAGMTAALYASRSNLSVLMI 49


>gi|315127366|ref|YP_004069369.1| dihydrolipoamide dehydrogenase [Pseudoalteromonas sp. SM9913]
 gi|315015880|gb|ADT69218.1| dihydrolipoamide dehydrogenase [Pseudoalteromonas sp. SM9913]
          Length = 482

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     DV+VIG G AG  +A   AK        T     I S         +G      
Sbjct: 1   MKELQTDVVVIGAGTAGL-SAYRNAKQ------FTQNVLMIESGPYGTTCARVGCMPSKL 53

Query: 61  EIDALDGLM-GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            I A +      +A A G+      V  G AV   R +++R+ +   +   +    + D 
Sbjct: 54  LIAAAEAAHSIEMAPAFGVHSSKP-VIDGKAVMA-RVKSERDRFAGFVVEAVDEIPSEDK 111

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           I+G     +  +     + + D+++I     V+ TG+
Sbjct: 112 IRGYAQFLDANR-----VQIDDHTIITAKRFVIATGS 143


>gi|268680066|ref|YP_003304497.1| flavocytochrome C [Sulfurospirillum deleyianum DSM 6946]
 gi|268618097|gb|ACZ12462.1| flavocytochrome c [Sulfurospirillum deleyianum DSM 6946]
          Length = 512

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           ++ YDV+VIG G AG  A   AA+ G    +       +G    N  I G
Sbjct: 39 YDQEYDVVVIGSGFAGLAATITAAEKGLKVCV----IEKMGRFGGNSIING 85


>gi|283798196|ref|ZP_06347349.1| rubredoxin/flavodoxin/oxidoreductase [Clostridium sp. M62/1]
 gi|291074066|gb|EFE11430.1| rubredoxin/flavodoxin/oxidoreductase [Clostridium sp. M62/1]
          Length = 847

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 84/245 (34%), Gaps = 32/245 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++  + + +VIGGG  G EAA    K G    ++      +G      A      G +++
Sbjct: 593 LLGHTRNAVVIGGGVLGLEAAWELKKAGLRVTVLEAAPMLMGRQLDATA------GTILK 646

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EI   +G+        G+    ++  +  AV G   Q+        +      + N  + 
Sbjct: 647 EIVEKNGISI----HTGVTIESIDADESGAVSGVTLQSGESFPAQLVIISAGVRANTALA 702

Query: 121 QGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM--GD 176
           +    G   E+ ++ +  M+    ++  C       G        I       GR+   +
Sbjct: 703 KEM--GLQVERAVVVNSHMETGLKNIYACGDCAEYKGANFA----IWPEASEQGRIAGAN 756

Query: 177 SPSNSL-----FNSFMKFDFDTGRLKTGT---PARLDGKTIIWDKTEKQFADERLIPFSF 228
           +  +SL      ++      +T     G       L  KT+ +         E+   + F
Sbjct: 757 AAGDSLEYREVSSALTFNGMNTSLYAAGDNGKNPNLLYKTVEFKDM----GKEQYRKYYF 812

Query: 229 MTDKI 233
           + +++
Sbjct: 813 LNNRL 817


>gi|222095051|ref|YP_002529111.1| oxidoreductase [Bacillus cereus Q1]
 gi|221239109|gb|ACM11819.1| oxidoreductase [Bacillus cereus Q1]
          Length = 397

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          DV+V+G G AG + A   AK+G    LI     + GS + N  +
Sbjct: 29 DVLVVGSGEAGAQIAYSLAKMGMRVTLIEKNMISCGSTAANTGL 72


>gi|206977531|ref|ZP_03238425.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217958892|ref|YP_002337440.1| hypothetical protein BCAH187_A1472 [Bacillus cereus AH187]
 gi|229138103|ref|ZP_04266701.1| Oxidoreductase [Bacillus cereus BDRD-ST26]
 gi|206744249|gb|EDZ55662.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217064521|gb|ACJ78771.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228645448|gb|EEL01682.1| Oxidoreductase [Bacillus cereus BDRD-ST26]
          Length = 397

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          DV+V+G G AG + A   AK+G    LI     + GS + N  +
Sbjct: 29 DVLVVGSGEAGAQIAYSLAKMGMRVTLIEKNMISCGSTAANTGL 72


>gi|118497290|ref|YP_898340.1| L-aspartate oxidase [Francisella tularensis subsp. novicida U112]
 gi|194323593|ref|ZP_03057370.1| L-aspartate oxidase [Francisella tularensis subsp. novicida FTE]
 gi|208779083|ref|ZP_03246429.1| L-aspartate oxidase [Francisella novicida FTG]
 gi|118423196|gb|ABK89586.1| L-aspartate oxidase [Francisella novicida U112]
 gi|194322448|gb|EDX19929.1| L-aspartate oxidase [Francisella tularensis subsp. novicida FTE]
 gi|208744883|gb|EDZ91181.1| L-aspartate oxidase [Francisella novicida FTG]
          Length = 495

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKDDKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|84515746|ref|ZP_01003107.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Loktanella vestfoldensis SKA53]
 gi|84510188|gb|EAQ06644.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Loktanella vestfoldensis SKA53]
          Length = 404

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG--LGKGHLVREI 62
           V+++GGG+ G EAAAVAAK G    L+         + +   +          G  +RE 
Sbjct: 147 VLIVGGGYIGLEAAAVAAKRGLRVTLVEMADRILQRVAAPQTSDYFRALHRAHGVTIRES 206

Query: 63  DALDGLMG 70
             LD L+G
Sbjct: 207 VGLDRLLG 214


>gi|239980154|ref|ZP_04702678.1| putative FAD-dependent oxidoreductase [Streptomyces albus J1074]
 gi|291452009|ref|ZP_06591399.1| electron transfer oxidoreductase [Streptomyces albus J1074]
 gi|291354958|gb|EFE81860.1| electron transfer oxidoreductase [Streptomyces albus J1074]
          Length = 428

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           ++ DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 7  EQTADVIVVGAGPAGSTTAYHLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|323698804|ref|ZP_08110716.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio sp. ND132]
 gi|323458736|gb|EGB14601.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio desulfuricans ND132]
          Length = 678

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+V+G G AG +AA   AK G    L+    S  G M
Sbjct: 143 DVMVVGAGIAGIQAALDIAKSGHKVHLVEKSPSIGGHM 180


>gi|290958262|ref|YP_003489444.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260647788|emb|CBG70893.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 430

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   + DVIV+G G AG   A   AK G    L+  KTS      C   +       LV
Sbjct: 7  LTEHTADVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTSFPREKVCGDGLTPRATKQLV 64


>gi|228946056|ref|ZP_04108393.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228813623|gb|EEM59907.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 456

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          I + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +
Sbjct: 20 IMKKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINK 67

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
                L        G  F   N
Sbjct: 68 NGICMNLGAHALYRGGAAFLTFN 90


>gi|229184659|ref|ZP_04311860.1| phytoene dehydrogenase enzyme [Bacillus cereus BGSC 6E1]
 gi|228598872|gb|EEK56491.1| phytoene dehydrogenase enzyme [Bacillus cereus BGSC 6E1]
          Length = 416

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          I + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +
Sbjct: 20 IMKKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINK 67

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
                L        G  F   N
Sbjct: 68 NGICMNLGAHALYRGGAAFLTFN 90


>gi|284992926|ref|YP_003411480.1| geranylgeranyl reductase [Geodermatophilus obscurus DSM 43160]
 gi|284066171|gb|ADB77109.1| geranylgeranyl reductase [Geodermatophilus obscurus DSM 43160]
          Length = 419

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R  DV+V+G G AG  AA   A+ G   A++
Sbjct: 5  DRRADVLVVGAGPAGSSAAWHLARAGLDVAVL 36


>gi|149201193|ref|ZP_01878168.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseovarius sp. TM1035]
 gi|149145526|gb|EDM33552.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseovarius sp. TM1035]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          SYDVI+IG G  G   A   A+LG  TA++  + +  G+   + C P+   L   H++ E
Sbjct: 3  SYDVIIIGAGPGGYVCAIRCAQLGLKTAVVEGRATLGGTCLNVGCIPSKALLHASHMLHE 62

Query: 62 ID---ALDGLMGR 71
           +   A  GL G+
Sbjct: 63 AEHNFAAMGLKGK 75


>gi|118477844|ref|YP_894995.1| phytoene dehydrogenase related enzyme [Bacillus thuringiensis
          str. Al Hakam]
 gi|229091427|ref|ZP_04222639.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-42]
 gi|118417069|gb|ABK85488.1| possible phytoene dehydrogenase related enzyme [Bacillus
          thuringiensis str. Al Hakam]
 gi|228691919|gb|EEL45664.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-42]
          Length = 456

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          I + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +
Sbjct: 20 IMKKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINK 67

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
                L        G  F   N
Sbjct: 68 NGICMNLGAHALYRGGAAFLTFN 90


>gi|95928657|ref|ZP_01311404.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfuromonas acetoxidans DSM 684]
 gi|95135447|gb|EAT17099.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfuromonas acetoxidans DSM 684]
          Length = 454

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + +DV+V+GGG AG  +A   A  G    ++      +G
Sbjct: 1  MEKVWDVVVLGGGPAGVMSALKLAMSGKKVCMVEQGPQRLG 41


>gi|322373584|ref|ZP_08048120.1| thioredoxin-disulfide reductase [Streptococcus sp. C150]
 gi|321278626|gb|EFX55695.1| thioredoxin-disulfide reductase [Streptococcus sp. C150]
          Length = 306

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD I+IG G AG  AA  AA+     A +  
Sbjct: 2  YDTIIIGAGPAGMTAALYAARANLKVATLEQ 32


>gi|317492706|ref|ZP_07951133.1| flavocytochrome c [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919456|gb|EFV40788.1| flavocytochrome c [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 523

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +R YDVIV+G G AG  AA  A  LG S  +       +     N  I G  
Sbjct: 45 YHRVYDVIVVGSGFAGLAAALEAVNLGRSVLV----IDKMPVCGGNSTINGGA 93


>gi|258564909|ref|XP_002583199.1| monoamine oxidase N [Uncinocarpus reesii 1704]
 gi|237906900|gb|EEP81301.1| monoamine oxidase N [Uncinocarpus reesii 1704]
          Length = 544

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          + YDVIV+G G+AG  AA  A + G +  L+  +   IG  + +  I G  
Sbjct: 45 QVYDVIVVGAGYAGLTAARNAVREGLNVLLLEAR-DRIGGRTWSSNINGYA 94


>gi|104784088|ref|YP_610586.1| FMN-binding oxidoreductase [Pseudomonas entomophila L48]
 gi|95113075|emb|CAK17803.1| putative oxidoreductase, FMN-binding [Pseudomonas entomophila L48]
          Length = 686

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+V+G G AG EAA VAA+ G    +   K   IG
Sbjct: 393 VVVVGAGPAGMEAARVAAERGHDVTVFE-KKEQIG 426


>gi|99078115|ref|YP_611373.1| NADH:flavin oxidoreductase/NADH oxidase [Ruegeria sp. TM1040]
 gi|99035253|gb|ABF62111.1| NADH:flavin oxidoreductase/NADH oxidase [Ruegeria sp. TM1040]
          Length = 681

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +   V ++G G AG EAA VAA+ G    +   +    G +          +    RE+
Sbjct: 384 EKQRKVAIVGAGPAGLEAARVAAERGHRVVVFEAQPDPGGQIRLT------AQSPRRREM 437

Query: 63  DALDGLMGRVADAAGIQFR 81
            ++         A  +QF 
Sbjct: 438 ISIVDWRMAQCAARDVQFH 456


>gi|257869112|ref|ZP_05648765.1| thioredoxin reductase [Enterococcus gallinarum EG2]
 gi|257803276|gb|EEV32098.1| thioredoxin reductase [Enterococcus gallinarum EG2]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|256423942|ref|YP_003124595.1| mercuric reductase [Chitinophaga pinensis DSM 2588]
 gi|256038850|gb|ACU62394.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Chitinophaga pinensis DSM 2588]
          Length = 460

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVRE 61
           R +D IVIG G  G   A   AK G  TA++  +    T  +  C P    +  G     
Sbjct: 2   RKFDAIVIGSGQGGVPLAKKLAKAGWQTAIVEKRWIGGTCINDGCTPTKSMIACGAAAHV 61

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           I         V+D   +    +  +K   V   R  A +          +   E L +I 
Sbjct: 62  IANSQEWGITVSD-FKVDLEKIVQRKNKVVESFRGGATKG---------MEKTEGLSIIY 111

Query: 122 GEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGTF 157
           GE            +++++D     I    + + TGT 
Sbjct: 112 GEA---VFTGEKTLNVILKDGGEEAITAPHIFINTGTL 146


>gi|254483377|ref|ZP_05096607.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214036361|gb|EEB77038.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 557

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--------SCNPAIGGLGK 55
          + YD I++G GH G       A+ G    ++    + +G M         C   +G    
Sbjct: 16 QQYDCIIVGAGHNGLATGLALARNGRRVLVLEKN-NYVGGMGGTREILKGCRNEVGASCL 74

Query: 56 GHLVREIDAL 65
            L  EI   
Sbjct: 75 FPLSAEIKQY 84


>gi|121998123|ref|YP_001002910.1| hypothetical protein Hhal_1341 [Halorhodospira halophila SL1]
 gi|121589528|gb|ABM62108.1| HI0933 family protein [Halorhodospira halophila SL1]
          Length = 393

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +    DVIVIG G AG   AA AA  G    ++ H
Sbjct: 1  MTEQIDVIVIGAGAAGLMCAATAAGRGRRVVVLDH 35


>gi|15618742|ref|NP_225028.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae CWL029]
 gi|15836366|ref|NP_300890.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae J138]
 gi|16752206|ref|NP_445574.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae AR39]
 gi|7531102|sp|Q9Z773|DLDH_CHLPN RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|4377145|gb|AAD18970.1| Lipoamide Dehydrogenase [Chlamydophila pneumoniae CWL029]
 gi|6672028|dbj|BAA88651.1| lipoamide dehydrogenase [Chlamydophila pneumoniae]
 gi|7189951|gb|AAF38812.1| 2-oxo acid dehydrogenase, E3 component, lipoamide dehydrogenase,
           putative [Chlamydophila pneumoniae AR39]
 gi|8979207|dbj|BAA99041.1| lipoamide dehydrogenase [Chlamydophila pneumoniae J138]
          Length = 461

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           + + +D +VIG G +G  AA  AA+    TALI    +  T  +  C P+   +   ++V
Sbjct: 1   MTQEFDCVVIGAGPSGYVAAITAAQSKLRTALIEEDQAGGTCLNRGCIPSKALIAGANVV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             I   +   G   D   I +  +  +K   V+G R   +  +              + V
Sbjct: 61  SHIKHAE-QFGIHVDGYTIDYPAMAKRKNTVVQGIRQGLEGLIRSNK----------ITV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           ++G   G       +  ++ QD ++I+ + ++L TG+
Sbjct: 110 LKG--TGSLVSSTEVK-VIGQDTTIIKANHIILATGS 143


>gi|121602043|ref|YP_988912.1| glutathione reductase [Bartonella bacilliformis KC583]
 gi|120614220|gb|ABM44821.1| glutathione-disulfide reductase [Bartonella bacilliformis KC583]
          Length = 461

 Score = 43.8 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 19/158 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           ++  +D+ VIGGG  G  AA +A  LG   A+        T     C P    +      
Sbjct: 1   MSFDFDLFVIGGGSGGVRAARLAGALGKRVAIAEEYRIGGTCVIRGCVPKKLFVYASQYA 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQREILSQENLD 118
           +E     G   + AD                 +      D+E+ RL  + R+IL   N+ 
Sbjct: 61  QEFSDSAGFGWKCADPIFD------------WQKLVAAKDKEISRLEELYRKILKNNNVH 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           + +  V   +         +      IR   +++ TG 
Sbjct: 109 IYESRVVFIDEHTLE----LTATGERIRAKKILIATGA 142


>gi|120602054|ref|YP_966454.1| hypothetical protein Dvul_1007 [Desulfovibrio vulgaris DP4]
 gi|120562283|gb|ABM28027.1| HI0933 family protein [Desulfovibrio vulgaris DP4]
          Length = 389

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  + D+I++G G +G   A  AA  G    L+       G       + G GK +    
Sbjct: 1  MTHNTDIIILGAGASGLMCAMTAAARGQRVTLV----DHGGKPGRKILVAGGGKCNFTNT 56

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
              D  +GR AD         +
Sbjct: 57 EVGPDDYVGRNADFCRSALARFS 79


>gi|114794041|pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
           Metaloenzyme At 1.85 A Resolution
          Length = 405

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 61  EIDALDGLMGRVADAAGIQFR--VLNVKK------GPAVRGPRTQADRELYRLAMQREIL 112
           E + L+G+     D + ++    ++N           A   PR    +  +         
Sbjct: 125 EANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVXGATWQPRAGIAKHDHVAWAFARKA 184

Query: 113 SQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           ++  +D+IQ  EV GF  +   ++ +       I    V       L G  H   L   A
Sbjct: 185 NEXGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVA------LAGAGHSSVLAEXA 237

Query: 172 G---RMGDSPSNSLFNSFMK 188
           G    +   P  +L +   +
Sbjct: 238 GFELPIQSHPLQALVSELFE 257


>gi|90581599|ref|ZP_01237390.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           angustum S14]
 gi|90437182|gb|EAS62382.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           angustum S14]
          Length = 386

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + YDVIV GGG  G   A   AKLG   A++                       H V  +
Sbjct: 2   KQYDVIVAGGGMVGAATALGLAKLGLDVAVLEGLAPRPFADTQPMDLRVSAISPHSVALL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------------RELYRLAMQRE 110
           + L      V +     F+ L   + P  R  R  AD              L +LA+ ++
Sbjct: 62  ERLGAW-NEVLNMRLCPFKRLETWESPECR-TRFNADDMGLEQLGYIVENRLLQLALWQQ 119

Query: 111 ILSQENLDVIQG--EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
               ENL +      V+    E   I  + +++   ++C  ++   G 
Sbjct: 120 FDKIENLTLYCPSKMVSTTPIENGYI--VELENTQQLQCRLLIGADGA 165


>gi|332141198|ref|YP_004426936.1| alkyl hydroperoxide reductase subunit F [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551220|gb|AEA97938.1| alkyl hydroperoxide reductase subunit F [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 529

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 84/265 (31%), Gaps = 56/265 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AG  +A  +A+ G   A++                GG  K  +  E     
Sbjct: 217 DVTVIGGGPAGVASAIYSARKGLKVAIVA------------ETFGGQVKDTMGIE----- 259

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                            N+   P   GP    +   +       +     +D        
Sbjct: 260 -----------------NLISVPKTTGPELVGNLMEHVRDYDITLKEHVRVD-------- 294

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSNS 181
            + EK  I +I +     IR  TV++ TG   R     G        +      D P   
Sbjct: 295 -SIEKGNIKTITLSSGEQIRTRTVIVATGARWRELGVPGERENVGNGVAYCPHCDGPFFK 353

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +  +    ++G       A +     +++   +  AD+ LI  +   D IT       
Sbjct: 354 GKDVAVIGGGNSGIEAALDLAGIVKSVTVFEFMPELKADQVLIDQAEKRDNIT------- 406

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD 266
               N  T +I  EN K +AI   D
Sbjct: 407 -IIKNAATRQITAENGKVNAIEYQD 430


>gi|103487706|ref|YP_617267.1| dihydrolipoamide dehydrogenase [Sphingopyxis alaskensis RB2256]
 gi|98977783|gb|ABF53934.1| dihydrolipoamide dehydrogenase [Sphingopyxis alaskensis RB2256]
          Length = 465

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M +  YDV+VIG G  G  AA  AA+LG  TA 
Sbjct: 1  MADYDYDVLVIGAGPGGYVAAIRAAQLGLKTAC 33


>gi|322369587|ref|ZP_08044151.1| dihydrolipoamide dehydrogenase [Haladaptatus paucihalophilus DX253]
 gi|320550757|gb|EFW92407.1| dihydrolipoamide dehydrogenase [Haladaptatus paucihalophilus DX253]
          Length = 453

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVRE 61
             +DV+VIGGG  G +    AA  G   AL+       T  +  CNP+     K  + R 
Sbjct: 2   EEFDVVVIGGG-TGNKVVLAAANRGLDVALVERGPVGGTCVNRGCNPS-----KTLIHRA 55

Query: 62  IDALD----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             A      G  G  AD   I F  +  +   AV G             M+R    +EN+
Sbjct: 56  DVAETVGRAGEFGIDADLERIDFPRIVHEVTRAVDG---------KSRRMERIDEERENV 106

Query: 118 DVIQGEV-----AGFNTEKNIISS--IVMQDNSM 144
            + + +         +     I    +V+   + 
Sbjct: 107 TLFRDDARFVGERTLDVGDERIRGEKVVVAAGAR 140


>gi|260431537|ref|ZP_05785508.1| dihydrolipoyl dehydrogenase [Silicibacter lacuscaerulensis
          ITI-1157]
 gi|260415365|gb|EEX08624.1| dihydrolipoyl dehydrogenase [Silicibacter lacuscaerulensis
          ITI-1157]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YDVIVIG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  NYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAKMGLKGK 75


>gi|254704932|ref|ZP_05166760.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 3 str. 686]
 gi|261755628|ref|ZP_05999337.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 3 str. 686]
 gi|261745381|gb|EEY33307.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 3 str. 686]
          Length = 467

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDVIVIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVIVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|119499626|ref|XP_001266570.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
 gi|119414735|gb|EAW24673.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
          Length = 533

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTA--------------LITHKTSTIGSMSCNPAIGGL 53
           V+++G G AG  AA    + G                  LI  + S +  M   P +   
Sbjct: 44  VLIVGAGFAGLMAALECWRKGHDVVGIVERNQGPNYSGDLIIIQPSALEIMKHWPQMRRE 103

Query: 54  GKGHLVREIDALDGLMGRVAD-AAGIQFRVL------NVKKGPAVRGPRTQADRELYRLA 106
            +   V          G + D  A   +  L        + G        Q  ++ YR+ 
Sbjct: 104 LEEDKVTVGTYYYRHNGELVDGPAQPNYNALEYVAEREARPGGFPYVGAVQIRKKFYRML 163

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           +++       +D  Q   + F  E   ++ + M D S+ +   VV   G   R  + I  
Sbjct: 164 LRQVARLGFRVDYGQRVESYFEDESAGVAGVRMTDGSIRKAHVVVAADGFRSRSELLIAD 223

Query: 167 LKIPA 171
             +P 
Sbjct: 224 EYLPT 228


>gi|85704799|ref|ZP_01035900.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Roseovarius sp. 217]
 gi|85670617|gb|EAQ25477.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Roseovarius sp. 217]
          Length = 462

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          SYDVI+IG G  G   A   A+LG  TA++  + +  G+   + C P+   L   H++ E
Sbjct: 3  SYDVIIIGAGPGGYVCAIRCAQLGLKTAVVEGRATLGGTCLNVGCIPSKALLHASHMLHE 62

Query: 62 ID---ALDGLMGR 71
           +   A  GL G+
Sbjct: 63 AEHNFAAMGLKGK 75


>gi|328880360|emb|CCA53599.1| Beta-carotene ketolase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          RSYD +V+GGGH G  AAA  A+ G S  ++    ST G+        G+
Sbjct: 15 RSYDAVVVGGGHNGLVAAAYLARAGRSVLVLERLGSTGGAAVSTRPFAGV 64


>gi|323484629|ref|ZP_08089991.1| dihydrolipoyl dehydrogenase [Clostridium symbiosum WAL-14163]
 gi|323694835|ref|ZP_08108990.1| dihydrolipoyl dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402012|gb|EGA94348.1| dihydrolipoyl dehydrogenase [Clostridium symbiosum WAL-14163]
 gi|323501151|gb|EGB17058.1| dihydrolipoyl dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--CNPAIGGLGKGHLV 59
           +   YDVI+IG G  G  AAA AA  G + ALI       G +   C        K  L 
Sbjct: 1   MADQYDVIIIGAGPGGYTAAARAAGFGMNVALIE-----KGELGGACVNTGCVPAKAMLQ 55

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR--ELYRLAMQREILSQENL 117
                   L          +F +     G  ++  +   D   E YR +M R +L++ N+
Sbjct: 56  ASA-VYGDL------KHASRFGISVDSVGFNLKKMQAYKDESVEEYR-SMIRSLLNRRNV 107

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGT 156
            +I G        K+ I  +  ++  S+     ++L TG 
Sbjct: 108 KLIHGTAK---LHKDNIVEVEGEEGSSLCVGKNIILATGA 144


>gi|323128031|gb|ADX25328.1| hypothetical protein SDE12394_09510 [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 391

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|306826684|ref|ZP_07459987.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pyogenes ATCC
          10782]
 gi|304431132|gb|EFM34138.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pyogenes ATCC
          10782]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|261189332|ref|XP_002621077.1| squalene epoxidase [Ajellomyces dermatitidis SLH14081]
 gi|239591654|gb|EEQ74235.1| squalene epoxidase [Ajellomyces dermatitidis SLH14081]
          Length = 484

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 17/173 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGK 55
           +   DV+++G G AGC  A    K G S  L+         I      P    A+  LG 
Sbjct: 31  HHEADVVIVGAGIAGCALAVTLGKQGRSVLLLERSLKEPDRIVGELLQPGGVRALEKLGL 90

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVL--NVKKGPAVRGPRTQADRELYRLAMQREILS 113
           GH + +IDA++   G      G +  +L    ++G   +G      R  + + ++     
Sbjct: 91  GHCLEDIDAIE-CHGMNVIYHGTEVPILYPKDEQGAPFKGRSFHHGR--FIMRLRESARV 147

Query: 114 QENLDVIQGEVAGFNTE--KNIISSIV-MQDNSM--IRCSTVVLTTGTFLRGV 161
             N+ +++            N +  +    D            +  G   +  
Sbjct: 148 TPNVTIVETTAVSVIHSSTDNEVLGVQCTTDGQKDYFFAPLTFIADGYASKFR 200


>gi|94995038|ref|YP_603136.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS10750]
 gi|94548546|gb|ABF38592.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS10750]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|94991164|ref|YP_599264.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS10270]
 gi|94544672|gb|ABF34720.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS10270]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|94989219|ref|YP_597320.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS9429]
 gi|94993106|ref|YP_601205.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS2096]
 gi|94542727|gb|ABF32776.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS9429]
 gi|94546614|gb|ABF36661.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS2096]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|71904239|ref|YP_281042.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pyogenes
          MGAS6180]
 gi|71803334|gb|AAX72687.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS6180]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|89896972|ref|YP_520459.1| putative fumarate reductase flavoprotein subunit
          [Desulfitobacterium hafniense Y51]
 gi|89336420|dbj|BAE86015.1| putative fumarate reductase flavoprotein subunit
          [Desulfitobacterium hafniense Y51]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          D++V+G G+ GC AA  AA LGA  A +     TI    
Sbjct: 51 DIVVVGAGNGGCIAAVSAADLGAKVAWVEQNAGTITWAG 89


>gi|28895169|ref|NP_801519.1| hypothetical protein SPs0257 [Streptococcus pyogenes SSI-1]
 gi|28810414|dbj|BAC63352.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    + 
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGNL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|116750967|ref|YP_847654.1| dihydrolipoamide dehydrogenase [Syntrophobacter fumaroxidans MPOB]
 gi|116700031|gb|ABK19219.1| dihydrolipoamide dehydrogenase [Syntrophobacter fumaroxidans MPOB]
          Length = 468

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHL 58
           +  YDVIVIG G  G  A   AA+LG   A +  K+  +G    ++ C P+   L     
Sbjct: 4   DGKYDVIVIGSGPGGYVACLRAAELGLRAACVE-KSDRVGGACLNVGCIPSKALLESSRY 62

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                      G V D   +   V+  +K   VRG           +   R++L    + 
Sbjct: 63  YTLARKRFQEHGIVLDDQVLDLPVMMARKSEVVRGL----------VENVRKLLENAGVA 112

Query: 119 VIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTG 155
           +I+G        ++ +   V +D   +M+    VVL TG
Sbjct: 113 LIRGTAR--LAGEHRVE--VTRDGEKTMLEADAVVLATG 147


>gi|328881814|emb|CCA55053.1| Glycine oxidase ThiO [Streptomyces venezuelae ATCC 10712]
          Length = 402

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 55/208 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--------------------------- 39
           DV+V+GGG  G   A  AA+ G  TA++                                
Sbjct: 20  DVLVVGGGIIGLVTAWRAARRGLRTAVVDPDPGGGAARVAAGMLAAVTELHYGEETLLGL 79

Query: 40  TIGSMSCNPAI------------GGLGKGHL-----------VREIDALDGLMGRVA-DA 75
            + S +  PA             G    G L           +RE+ AL    G  +   
Sbjct: 80  NLASAARYPAFVAELREATGHDVGYRACGTLAVALDADDRAHLRELHALQTRCGLTSEWL 139

Query: 76  AGIQFRVLNVKKGPAVR-GPRTQADRELYRLAMQREIL---SQENLDVIQGEVAGFNTEK 131
           +G + R L     P VR G R   D ++    +   +L    +  +   +         +
Sbjct: 140 SGRECRRLEPMLAPGVRGGLRVDGDHQVDPRRLAAALLVACERAGVVFHRVLAQRLTVVR 199

Query: 132 NIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           +    +V+     +    VVL  G+   
Sbjct: 200 DRARGVVLAGGEELTADQVVLAAGSLSG 227


>gi|328880535|emb|CCA53774.1| FAD-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 425

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I   +DVIVIGGG AG   A + AK G    ++
Sbjct: 8  IPTEFDVIVIGGGPAGATTAGLLAKRGHQVLIL 40


>gi|325067536|ref|ZP_08126209.1| geranylgeranyl reductase [Actinomyces oris K20]
          Length = 433

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIV+G G AG  AA   A LG    L+  K        C   +        VRE+ ++ 
Sbjct: 15 DVIVVGAGPAGSSAAYHMATLGLDVILLE-KQELGRDKVCGDGLTPSA----VRELVSMG 69


>gi|320531269|ref|ZP_08032247.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|320136513|gb|EFW28483.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
          F0337]
          Length = 127

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIV+G G AG  AA   A LG    L+  K        C   +        VRE+ ++ 
Sbjct: 15 DVIVVGAGPAGSSAAYHMATLGLDVILLE-KQELGRDKVCGDGLTPSA----VRELVSMG 69


>gi|319791312|ref|YP_004152952.1| fad dependent oxidoreductase [Variovorax paradoxus EPS]
 gi|315593775|gb|ADU34841.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS]
          Length = 425

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-------CNPAIGGLGKGHLV 59
           DV V+G G  G  AA   AK GAS A+     ST+GS +       CN            
Sbjct: 27  DVAVVGAGFTGLSAAIALAKKGASVAVF--DASTVGSAASGRNGGMCNNGFAQDYVALSG 84

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG 88
           R       ++ R  DA   +   L  ++G
Sbjct: 85  RLGRERANMLYRAFDAGVCKVESLIAEEG 113


>gi|310780061|ref|YP_003968393.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ilyobacter polytropus DSM 2926]
 gi|309749384|gb|ADO84045.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ilyobacter polytropus DSM 2926]
          Length = 538

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 33/171 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIGGG A   AA  A+K    T +I     +IG     P    +            D
Sbjct: 12  DILVIGGGIAAVFAATRASK--NKTNVIVVDKGSIGRSGQTPFASAMA---------VFD 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--RELYRL-------------AMQREI 111
             +G   D         N KK        +  D  +E+Y+               +++++
Sbjct: 61  EELGHKRDEWHRIVEE-NSKKLNNPAYLDSYMDYSKEIYKDLESWKATDVGFGGVLRKKL 119

Query: 112 LSQENLDVIQ-GEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGT 156
           L  +N+ +I+   +     E N+++  V      +   +I+  +V+L TG 
Sbjct: 120 LEDKNIKIIERTMITTLLEENNVVTGAVGFSLDSEKAIVIKAKSVILCTGA 170


>gi|326772153|ref|ZP_08231438.1| monooxygenase [Actinomyces viscosus C505]
 gi|326638286|gb|EGE39187.1| monooxygenase [Actinomyces viscosus C505]
          Length = 433

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIV+G G AG  AA   A LG    L+  K        C   +        VRE+ ++ 
Sbjct: 15 DVIVVGAGPAGSSAAYHMATLGLDVILLE-KQELGRDKVCGDGLTPSA----VRELVSMG 69


>gi|302828736|ref|XP_002945935.1| hypothetical protein VOLCADRAFT_54924 [Volvox carteri f.
           nagariensis]
 gi|300268750|gb|EFJ52930.1| hypothetical protein VOLCADRAFT_54924 [Volvox carteri f.
           nagariensis]
          Length = 575

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 14/163 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++G G AG   AA  A+ G +  ++      + +            G    E  AL 
Sbjct: 106 DVTIVGAGPAGLYLAAELARRGLTVNVLGLDVPIVNNY-----------GVWTDEFQALG 154

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                              K+    RG   +  R   R  +     +   +     EVA 
Sbjct: 155 LEHTLECSWPDAVCYFGEGKEVRVGRGY-GRVSRRKLRSHLLEVCEA-AGVRFSSAEVAD 212

Query: 127 F-NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
               E   ++ +  +D ++ R     L  G      +      
Sbjct: 213 IQVVEAGKVTQLTTKDGTVYRSRLTTLAAGAAGGKFLRYEDDA 255


>gi|183600674|ref|ZP_02962167.1| hypothetical protein PROSTU_04264 [Providencia stuartii ATCC 25827]
 gi|188019775|gb|EDU57815.1| hypothetical protein PROSTU_04264 [Providencia stuartii ATCC 25827]
          Length = 400

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--- 60
           ++YDVI++G G AG   A++A K G +T +          +     + G G+ +      
Sbjct: 2   KNYDVIILGAGAAGLFCASLAGKRGLNTLV----LDNGKKLGRKILMSGGGRCNFTNIYA 57

Query: 61  EIDALDGLMGRVADAAGIQF------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E             +A  ++       ++N    P       Q   +     +   +  +
Sbjct: 58  EHSNYLSANPHFCKSALARYTQWDFIALVNKYNIPYHEKTLGQLFCDNSAQDIVDMLEEE 117

Query: 115 ---ENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               N+ + ++ EV G   EK     +V  + + +   ++V+ TG
Sbjct: 118 CRLPNITIKLRSEVTG--VEKIDNGFVVTVNGNKVSAHSLVVATG 160


>gi|225159151|ref|ZP_03725456.1| L-aspartate oxidase [Opitutaceae bacterium TAV2]
 gi|224802253|gb|EEG20520.1| L-aspartate oxidase [Opitutaceae bacterium TAV2]
          Length = 541

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +   YDV+VIG G AG   A   A+ G S A++T K       + N A GG+ 
Sbjct: 1  MQNDYDVLVIGSGIAGLSFALKCARAGHSVAILT-KKDK-ADSNTNHAQGGIA 51


>gi|83954184|ref|ZP_00962904.1| sarcosine oxidase, alpha subunit family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841221|gb|EAP80391.1| sarcosine oxidase, alpha subunit family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 1005

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGG AG EAA  AA  GA   ++     T       P  GG   G  V   D +D
Sbjct: 170 DVLIIGGGVAGLEAARTAALSGAKVIVLEQ---TAHWGGRAPVDGGTVDGTPV--ADFID 224

Query: 67  GLMGRVADAAGIQFRV 82
            L+  ++  A +  R 
Sbjct: 225 ALVAELSGMANVTLRT 240


>gi|315222021|ref|ZP_07863932.1| thioredoxin-disulfide reductase [Streptococcus anginosus F0211]
 gi|315188987|gb|EFU22691.1| thioredoxin-disulfide reductase [Streptococcus anginosus F0211]
          Length = 323

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 43/158 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N  YD I+IG G AG  AA  AA+      L+                          E
Sbjct: 18  VNFMYDTIIIGAGPAGMTAALYAARSNLKVGLL--------------------------E 51

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M   +D       + N      + GP            M   + +     +  
Sbjct: 52  RGIPGGQMNNTSD-------IENYPGYANISGPELA-------EKMFEPLENLGVEHLF- 96

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           G V     +   I  +  +D  +    T+++ TG F R
Sbjct: 97  GSVEKIEDQGA-IKKVFTED-EVFETKTLIIATGAFHR 132


>gi|289665678|ref|ZP_06487259.1| hypothetical protein XcampvN_22029 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 393

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 14/147 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSAFTAGRRGRQVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFISANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRC 147
             ++     ++   + + ++    +  
Sbjct: 108 SKQIVRMLLDECDAAGVQIRTQCEVLS 134


>gi|167042679|gb|ABZ07400.1| putative FAD binding domain protein [uncultured marine
          crenarchaeote HF4000_ANIW133M9]
          Length = 573

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD+I++G G AG  A   AA+  +   +       +       A GG        E D+
Sbjct: 9  DYDLIIVGSGLAGLRATIQAARRNSKIRIAVISKVQVMRSHSVSAEGGTAAVLFPDEGDS 68

Query: 65 LDGLM 69
          ++  +
Sbjct: 69 IESHI 73


>gi|83858345|ref|ZP_00951867.1| dihydrolipoamide dehydrogenase [Oceanicaulis alexandrii HTCC2633]
 gi|83853168|gb|EAP91020.1| dihydrolipoamide dehydrogenase [Oceanicaulis alexandrii HTCC2633]
          Length = 482

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   S+DVIVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSENSFDVIVIGSGPGGYVAAIRAAQLGLKTAIV 34


>gi|326388154|ref|ZP_08209757.1| dihydrolipoamide dehydrogenase [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326207320|gb|EGD58134.1| dihydrolipoamide dehydrogenase [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 468

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YDV+VIGGG  G  AA  AA+LG  TA 
Sbjct: 3  MAEYDYDVLVIGGGPGGYVAAIRAAQLGLKTAC 35


>gi|315646822|ref|ZP_07899937.1| putative FAD-binding dehydrogenase [Paenibacillus vortex V453]
 gi|315277752|gb|EFU41076.1| putative FAD-binding dehydrogenase [Paenibacillus vortex V453]
          Length = 549

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           YDVIV+G G +G  A A  A+ G    L+  +  +        + GG
Sbjct: 2  KYDVIVVGAGLSGLVATAEMAEAGKKVLLLDQEPESFIGGQAWWSFGG 49


>gi|304406627|ref|ZP_07388282.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344160|gb|EFM09999.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus curdlanolyticus YK9]
          Length = 581

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIVIGGG AG  A   AA+ G    L +          C    G  G  +   E D
Sbjct: 6  VIVIGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|254474830|ref|ZP_05088216.1| oxidoreductase, FAD/FMN-binding family [Ruegeria sp. R11]
 gi|214029073|gb|EEB69908.1| oxidoreductase, FAD/FMN-binding family [Ruegeria sp. R11]
          Length = 687

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G G AG EAA VAA+ G    +I             P  GG  +   +    A   
Sbjct: 389 VVVVGAGPAGLEAARVAAERGHEVTVIE----------AAPDPGGQVR---LTAQSARRR 435

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRG---PRTQADRELYRLAMQREILSQENLDVIQG-- 122
            M  + D    Q   ++V+            T  D ++  +A         NL + +   
Sbjct: 436 EMIGIIDWRMAQCAAMDVRFNFNTWAEPEDVTSLDPDVVIIATG----GLPNLHLFETKS 491

Query: 123 EVAGFNTEKNIISSIVMQDNSMI 145
           E A   +  +IIS  V    S++
Sbjct: 492 EAAHVVSSWDIISGDVTPAGSIL 514


>gi|254473608|ref|ZP_05087004.1| gamma-glutamylputrescine oxidoreductase [Pseudovibrio sp. JE062]
 gi|211957320|gb|EEA92524.1| gamma-glutamylputrescine oxidoreductase [Pseudovibrio sp. JE062]
          Length = 437

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIG G+AG  +A   A+ G    L+       G+   N    G G+     E++AL 
Sbjct: 42  DVCVIGAGYAGLSSALHLAERGYKVHLLDAHRVGWGASGRNGGQLGSGQRKDQDELEALV 101

Query: 67  GL 68
           GL
Sbjct: 102 GL 103


>gi|149178870|ref|ZP_01857449.1| soluble pyridine nucleotide transhydrogenase [Planctomyces maris
          DSM 8797]
 gi|148842282|gb|EDL56666.1| soluble pyridine nucleotide transhydrogenase [Planctomyces maris
          DSM 8797]
          Length = 496

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           YD+++IG G AG +AA  A+KLG   A+I      +G
Sbjct: 2  KYDIVIIGSGPAGQKAAIAASKLGKRVAIIERNFRGMG 39


>gi|294011847|ref|YP_003545307.1| glutathione reductase (NADPH) [Sphingobium japonicum UT26S]
 gi|37963659|gb|AAR05955.1| ORFG [Sphingobium indicum]
 gi|292675177|dbj|BAI96695.1| glutathione reductase (NADPH) [Sphingobium japonicum UT26S]
          Length = 448

 Score = 43.4 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 26/162 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   YD+ VIG G  G  AA V+A  GA  A+                     + H V 
Sbjct: 1   MLTYDYDLFVIGAGSGGVRAARVSAAYGARVAV--------------------AEEHRVG 40

Query: 61  EIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-- 117
               + G + +     G  F   L   +    + P  + D    R  +  E+   E L  
Sbjct: 41  GTCVIRGCVPKKLLVYGSHFAEDLQDARRFGWKVPDCEFDWSALRDNVLAEVSRLEGLYT 100

Query: 118 DVIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTGT 156
           + +         E+  ++    +++     I    +++ TG 
Sbjct: 101 ETLGNNKVEIIRERATVAGPHEVLLGSGQTITAGKILIATGA 142


>gi|299744721|ref|XP_002910829.1| phenol 2-monooxygenase [Coprinopsis cinerea okayama7#130]
 gi|298406258|gb|EFI27335.1| phenol 2-monooxygenase [Coprinopsis cinerea okayama7#130]
          Length = 623

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
          DV++IG G AG  A    AKLG    ++  +   I
Sbjct: 15 DVLIIGAGPAGLMACNALAKLGVKVRIVEKRPHNI 49


>gi|183982406|ref|YP_001850697.1| l-aspartate oxidase NadB [Mycobacterium marinum M]
 gi|183175732|gb|ACC40842.1| l-aspartate oxidase NadB [Mycobacterium marinum M]
          Length = 524

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 36/185 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG----------KG 56
           DV+VIG G AG  AA  A + G S  L+     T+G+ + + A GG+             
Sbjct: 12  DVVVIGTGVAGLAAALSAHRAGRSVVLLNKAADTVGATATHYAQGGIAVVLPGSDDSVDA 71

Query: 57  HLVREIDALDGLMGR-------------VADAAGIQFRVLNVKKG------PAVRGPR-- 95
           H+   + A  GL                V D  G   +      G            R  
Sbjct: 72  HVADTVTAGAGLCDLEAVYSIVADGFRAVTDLVGDGAKFDETSTGRWALTREGGHSRRRI 131

Query: 96  TQADRELYRLAMQREILSQEN-LDVIQGEVA-GFNTEKNIISSIVMQDN---SMIRCSTV 150
             A  +     +QR +      LD+    VA     +   ++ +++ +     +I   +V
Sbjct: 132 VHAGGDATGAEVQRALDQAAGLLDIRASHVALRILHDDTAVTGVLVLNPNGVGIISAPSV 191

Query: 151 VLTTG 155
           +L TG
Sbjct: 192 ILATG 196


>gi|119504101|ref|ZP_01626182.1| geranylgeranyl reductase [marine gamma proteobacterium HTCC2080]
 gi|40063464|gb|AAR38264.1| bacteriochlorophyll reductase [uncultured marine bacterium 581]
 gi|119460104|gb|EAW41198.1| geranylgeranyl reductase [marine gamma proteobacterium HTCC2080]
          Length = 397

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+VIGGG +G  AA   AK      L+
Sbjct: 1  MSNTDYDVVVIGGGPSGASAAEHLAKQNYRVLLL 34


>gi|18645075|gb|AAL76376.1| geranylgeranyl bacteriochlorophyll reductase [uncultured marine
          proteobacterium]
          Length = 397

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+VIGGG +G  AA   AK      L+
Sbjct: 1  MSNTDYDVVVIGGGPSGASAAEHLAKQNYRVLLL 34


>gi|89901097|ref|YP_523568.1| dihydrolipoamide dehydrogenase [Rhodoferax ferrireducens T118]
 gi|89345834|gb|ABD70037.1| dihydrolipoamide dehydrogenase [Rhodoferax ferrireducens T118]
          Length = 475

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +++ +DVIVIG G  G  AA  AA+LG + A +    ++ G     PA+GG 
Sbjct: 1  MSKQFDVIVIGAGPGGYIAAIRAAQLGKNVACVDEWKNSKG----GPALGGT 48


>gi|330995137|ref|ZP_08319054.1| FAD dependent oxidoreductase [Paraprevotella xylaniphila YIT
          11841]
 gi|329576713|gb|EGG58216.1| FAD dependent oxidoreductase [Paraprevotella xylaniphila YIT
          11841]
          Length = 497

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YDV+VIG G  G E A + ++ G    ++  
Sbjct: 2  KYDVVVIGSGLGGLECAYILSRAGLGVLVLEQ 33


>gi|331013180|gb|EGH93236.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tabaci ATCC 11528]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQGGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|283781999|ref|YP_003372754.1| FAD dependent oxidoreductase [Pirellula staleyi DSM 6068]
 gi|283440452|gb|ADB18894.1| FAD dependent oxidoreductase [Pirellula staleyi DSM 6068]
          Length = 481

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV+VIG G AG  AA +  + G    L    
Sbjct: 12 EYDVVVIGSGLAGLTAANILGRAGYRVMLAEQH 44


>gi|145356546|ref|XP_001422489.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582732|gb|ABP00806.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 528

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 35/170 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT------------STIGSMSCNPAI 50
           + +YD++++G G AG  AA  A+K G   AL+                    S+  +   
Sbjct: 95  SEAYDLVIVGCGPAGLTAADEASKRGLRVALMDPSPLAPWMNNYGVWCDEFKSLGFDDCY 154

Query: 51  GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQR 109
                 +  R I       G++ D A                    Q DR +L +  + R
Sbjct: 155 --RAVWNKARVIIDDGDADGKMLDRAY------------------AQVDRKKLKQKLIAR 194

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            +   + ++     V   +      S + + D   +    V+  TG   +
Sbjct: 195 SV--TQGVEFGIAAVDSCDNSDPNHSVVTLSDGRKVYAKMVLDATGHSRK 242


>gi|113953859|ref|YP_729256.1| hypothetical protein sync_0017 [Synechococcus sp. CC9311]
 gi|113881210|gb|ABI46168.1| conserved hypothetical protein TIGR00275 [Synechococcus sp.
          CC9311]
          Length = 437

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          N  +D+IVIGGG AG  AA  AA+ G    LI         +     I G G+ ++  
Sbjct: 21 NPRHDLIVIGGGPAGFMAAITAAERGVRDVLI---LEATPEVLTKVRISGGGRCNVTH 75


>gi|53711315|ref|YP_097307.1| dihydrolipoamide dehydrogenase [Bacteroides fragilis YCH46]
 gi|60679620|ref|YP_209764.1| putative dihydrolipoamide dehydrogenase [Bacteroides fragilis NCTC
           9343]
 gi|265764762|ref|ZP_06093037.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_16]
 gi|52214180|dbj|BAD46773.1| dihydrolipoamide dehydrogenase [Bacteroides fragilis YCH46]
 gi|60491054|emb|CAH05802.1| putative dihydrolipoamide dehydrogenase [Bacteroides fragilis NCTC
           9343]
 gi|263254146|gb|EEZ25580.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_16]
          Length = 447

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 15/152 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y VI+IGGG AG  AA  A K G S  L                 G +    L+     
Sbjct: 2   KYQVIIIGGGPAGYTAAEAAGKAGLSVLLF----EKQNLGGVCLNEGCIPTKTLLYSAKT 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            DG     +  A     V      P +   +++  R+L  L ++ ++ S  N+ +I GE 
Sbjct: 58  YDGAK-HASKYAVTVPEVFF--DLPKIIARKSKVVRKL-VLGVKSKLTSN-NVTIISGEA 112

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                +  +             C  ++L TG+
Sbjct: 113 T-ILDKNTVRCGEET-----YECDNLILCTGS 138


>gi|226943187|ref|YP_002798260.1| electron-transferring-flavoprotein dehydrogenase FixC [Azotobacter
           vinelandii DJ]
 gi|226718114|gb|ACO77285.1| electron-transferring-flavoprotein dehydrogenase, FixC [Azotobacter
           vinelandii DJ]
          Length = 432

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 51/176 (28%), Gaps = 28/176 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGSM 44
           +   +DVIV+G G AG  AA   AK G                     L       I   
Sbjct: 1   MAERFDVIVVGAGMAGNAAAYTLAKGGLKVLQIERGETPGSKNVQGAILYADAIEKIIPD 60

Query: 45  SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
             + A       HL+ E       +   A   G  +R  +  K P     R    R  + 
Sbjct: 61  FRDDAPLER---HLI-EQRVW---VMDDASYVGTHYRSEDFNKPP---YNRYTIIRVHFD 110

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTGTFLR 159
               ++      L + +  V     E   +  +        +R   V+L  G   R
Sbjct: 111 QWFNKKAREAGVLTICETTVTDLLIEGGKVVGVRTDRQGGEVRADAVILADGVNSR 166


>gi|327401916|ref|YP_004342755.1| Digeranylgeranylglycerophospholipid reductase [Archaeoglobus
          veneficus SNP6]
 gi|327317424|gb|AEA48040.1| Digeranylgeranylglycerophospholipid reductase [Archaeoglobus
          veneficus SNP6]
          Length = 389

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          YDV+VIG G  G  AA  AA+ G S  L+  +      + C   +    
Sbjct: 2  YDVVVIGAGPGGSIAAKTAAEKGLSVLLVEKRQEIGTPVRCAEGVSKEA 50


>gi|300866976|ref|ZP_07111647.1| geranylgeranyl reductase [Oscillatoria sp. PCC 6506]
 gi|300335011|emb|CBN56813.1| geranylgeranyl reductase [Oscillatoria sp. PCC 6506]
          Length = 365

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +D I++G G AG  AA   AK G S  +              P  GG+ 
Sbjct: 2  FDCIIVGAGPAGSTAAYHLAKRGRSVLV----LEKESWPRFKPCGGGIS 46


>gi|269965462|ref|ZP_06179581.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           alginolyticus 40B]
 gi|269829941|gb|EEZ84171.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           alginolyticus 40B]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             YD+ VIGGG  G   A   AK G S  L+      +   +    I      H   E+ 
Sbjct: 2   NKYDIAVIGGGMVGAAVAVGFAKQGRSVVLVEGTKPKVFDAAQAMDIRVSAISHQSVELL 61

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELY-------RLAMQREIL 112
              G    +       +R L   + P  R          D+  Y       +L + +   
Sbjct: 62  DSLGAWPEIKSMRVCPYRRLETWEHPECRTRFHSDELSLDQLGYIVENRLIQLGLWQVFS 121

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             ENL V+  E      E   ++ + ++  +    + V+   G   +
Sbjct: 122 QYENLTVMCPERLKAI-EFADVNLVTLESGAQFEANWVIGADGANSK 167


>gi|302884051|ref|XP_003040923.1| hypothetical protein NECHADRAFT_87341 [Nectria haematococca mpVI
           77-13-4]
 gi|256721816|gb|EEU35210.1| hypothetical protein NECHADRAFT_87341 [Nectria haematococca mpVI
           77-13-4]
          Length = 632

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ V+G G AG   + +AAKLG +  +   +              G   G   + I+  
Sbjct: 24  YDLCVVGAGPAGLMLSVIAAKLGLTVKVADERPDQTTV--------GRADGIQPKTIETF 75

Query: 66  DGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             L +G      G++   + + +G    G R       Y  ++   +     L   QG +
Sbjct: 76  QMLRIGDELMKTGVRVHDICLWRGSQKEGIRRTGREVHYPASVVDVLEPYILLC-HQGMM 134

Query: 125 AGFNTEKNIISSIVMQDNSMI 145
                +    S + +  +   
Sbjct: 135 ESTFIDDLRKSGVEVSRSHTF 155


>gi|255323685|ref|ZP_05364815.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
 gi|255299399|gb|EET78686.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
          Length = 517

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 67/224 (29%), Gaps = 42/224 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
            +  +DVI+IG G AG  A   A + G+   +       +G +  N  I G G       
Sbjct: 40  FDEEWDVIIIGSGFAGLAAGLKATQKGSKVLI----LEKMGRIGGNSVINGGG------- 88

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                               V N    P       +  +EL+     +  L   + ++++
Sbjct: 89  ------------------MAVAN---NPVQAKTNIKDSKELFIADCLKAGLGINHTELLE 127

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                         + ++++    +         T  R ++        +G     P   
Sbjct: 128 T----LVDRGMDAYNFLVENGVQFKEHCAHFGGHTVARSLLTTND----SGSGYIQPMLE 179

Query: 182 LFNSFMKFDFDTGRLKTGTPARLD--GKTIIWDKTEKQFADERL 223
            F +      +  R        LD  G+ +     E+   D++L
Sbjct: 180 KFEALKDKGCELRRRAKFDDFVLDESGRVVGVTIREEYRFDDKL 223


>gi|218261809|ref|ZP_03476524.1| hypothetical protein PRABACTJOHN_02195 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223755|gb|EEC96405.1| hypothetical protein PRABACTJOHN_02195 [Parabacteroides johnsonii
          DSM 18315]
          Length = 473

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          N +YD+ +IGGG AG  AA  AA+ G  T L    
Sbjct: 24 NMNYDIAIIGGGPAGYTAAERAAEGGLKTVLFEKN 58


>gi|171915271|ref|ZP_02930741.1| Putative Dehyrogenase [Verrucomicrobium spinosum DSM 4136]
          Length = 423

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI----GGLGKGHL 58
              +DV++IGGG AG  AA   A+ G    ++              ++      + +   
Sbjct: 8   EHPWDVVIIGGGPAGSSAATTLAQAGRKVLVLE--KEKFPRFHIGESLLPYNRQVYEELG 65

Query: 59  VREIDALDGLMGRVADAA----GIQFRVLNVKKGP------AVRGPRTQADREL--YRLA 106
           V E  +  G M +         G +   L+  KG       AV+  R + D  L  +   
Sbjct: 66  VWEKISQAGFMRKKGAQFLLGDGTRKVRLDFSKGSFTEFPEAVQVERAKFDNILLTHSQE 125

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIIS 135
              E+  QE+L      V     + + ++
Sbjct: 126 CGAEVR-QESL------VQDLQVDADGVA 147


>gi|149194157|ref|ZP_01871255.1| thioredoxin-disulfide reductase [Caminibacter mediatlanticus
          TB-2]
 gi|149136110|gb|EDM24588.1| thioredoxin-disulfide reductase [Caminibacter mediatlanticus
          TB-2]
          Length = 303

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IGGG AG  A    ++LG  T L+
Sbjct: 2  YDVIIIGGGPAGLSAGIYTSRLGGKTLLL 30


>gi|21229433|ref|NP_635355.1| hypothetical protein MM_3331 [Methanosarcina mazei Go1]
 gi|20908029|gb|AAM33027.1| conserved protein [Methanosarcina mazei Go1]
          Length = 484

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVIV+G G +G  AA   +K G    ++
Sbjct: 2  KKYDVIVVGAGISGLLAALTLSKHGKKVLVL 32


>gi|169781376|ref|XP_001825151.1| FAD dependent oxidoreductase [Aspergillus oryzae RIB40]
 gi|83773893|dbj|BAE64018.1| unnamed protein product [Aspergillus oryzae]
          Length = 381

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 73/249 (29%), Gaps = 15/249 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGGLGKGHLVREI 62
             YDV V+G G  G  AA  AA+ G         +   +   S + +        L   +
Sbjct: 2   EQYDVAVVGLGVLGSAAAYQAAQRGKKVIAFEQFEFGHVHGASHDTSRIIRTSNPLPEYV 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                     A+      + L    G  V  PR +A      L    ++ +  +  +   
Sbjct: 62  KLARSAYKDWAELEEATGQKLLTITGGLVFVPREKASPFE-SLINTLKVTNLPHEILNAT 120

Query: 123 EVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           EV     + +I   + ++   D  +   S  V       R    I K   P  R+     
Sbjct: 121 EVKKRWPQFDIPDTVDAVYTADTGIAHASKTVAAMQYLARSKGAILKENTPVDRVVPKKE 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLD------GKTIIWDKTEKQFADERLIPFSFMTDKI 233
             +     K +F   ++   T A  +      G  I     ++Q    +       T   
Sbjct: 181 GGVTIQTPKGEFHAAKVILTTDAWTNKLLAPLGVHIPLSVMQEQVTYFKPT----DTAAF 236

Query: 234 TNRQIECGI 242
              +    I
Sbjct: 237 QPDRFPVWI 245


>gi|54022427|ref|YP_116669.1| 3-ketosteroid-delta-1-dehydrogenase [Nocardia farcinica IFM
          10152]
 gi|54013935|dbj|BAD55305.1| putative 3-ketosteroid 1-dehydrogenase [Nocardia farcinica IFM
          10152]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           SYDV+V+G G AG  AA  AA  G    ++
Sbjct: 9  HSYDVVVVGSGAAGMTAALTAAHHGLRVVVL 39


>gi|103488160|ref|YP_617721.1| mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
 gi|98978237|gb|ABF54388.1| Mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
          Length = 475

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 35/161 (21%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ VIG G AG  AA  AA  GA+ ALI H   TIG    N     +G       I A 
Sbjct: 14  YDLAVIGAGSAGFSAAITAADQGANVALIGH--GTIGGTCVN-----VGCVPSKTMIRAA 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           + L G  A             + P V G   Q D     +A + +++S    D+ Q +  
Sbjct: 67  EALHGARA-----------AARFPGVSGN-AQVDDWHSLIAAKDDLVS----DLRQRKYV 110

Query: 126 GFNTEKNIIS-----------SIVMQDNSMIRCSTVVLTTG 155
               E + I+            +++ D   I    +++ TG
Sbjct: 111 DLLPEYDGITYLEGAARLDGAGVIVGD-EPITAGKIIIATG 150


>gi|329768239|ref|ZP_08259740.1| dihydrolipoyl dehydrogenase [Gemella haemolysans M341]
 gi|328837438|gb|EGF87067.1| dihydrolipoyl dehydrogenase [Gemella haemolysans M341]
          Length = 469

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 44/172 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
             +  D IVIGGG  G  AA   A+LG    L       +G       C P+   +  GH
Sbjct: 6   FIQELDTIVIGGGPGGYVAAIKLAQLGKKVTLFE--KEKVGGTCLHRGCIPSKALISVGH 63

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE------- 110
              EI                        +G  ++    + D    +     E       
Sbjct: 64  QFEEIK--------------------KSSRG--IKVDNAEIDFVETQHWKNEEVVETLHK 101

Query: 111 ----ILSQENLDVIQGEVAGFNTEKNIISSIVMQD--NSMIRCSTVVLTTGT 156
               +L +  ++VI GEV       +   S+++ +  N+       ++ TGT
Sbjct: 102 GVQGLLKKNGVNVIYGEVNFI---DDKTISVILDEFHNNTYHFKEAIIATGT 150


>gi|322437068|ref|YP_004219280.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidobacterium sp. MP5ACTX9]
 gi|321164795|gb|ADW70500.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidobacterium sp. MP5ACTX9]
          Length = 469

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++  YD+IVIG G AG  AA  A+KLG   A++  
Sbjct: 1  MSSVYDLIVIGSGPAGQRAAIYASKLGKKVAVVEM 35


>gi|226494213|ref|NP_001149528.1| sarcosine oxidase [Zea mays]
 gi|195627806|gb|ACG35733.1| sarcosine oxidase [Zea mays]
          Length = 413

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++DVIV+G G  G   A  AA  GA   L+
Sbjct: 20 NFDVIVVGAGIMGSCTAHAAASRGARVLLL 49


>gi|260100117|pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
 gi|260100118|pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
 gi|260100119|pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
          Hydroxylase With Fad And Aklavinone
 gi|505673|gb|AAA83424.1| RdmE [Streptomyces purpurascens]
          Length = 535

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +   DV+V+G G  G   A   A+ G    ++  +         +P     G+     
Sbjct: 1  MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP------GLSPYPRAAGQNPRTM 54

Query: 61 EIDALDGL---MGRVADAAGIQ 79
          E+  + G+   + R  D  G Q
Sbjct: 55 ELLRIGGVADEVVRADDIRGTQ 76


>gi|83950392|ref|ZP_00959125.1| probable methylamine [Roseovarius nubinhibens ISM]
 gi|83838291|gb|EAP77587.1| probable methylamine [Roseovarius nubinhibens ISM]
          Length = 658

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +V+GGG AG E A   A+ G +  L        G ++   A+ GLG
Sbjct: 360 LVVGGGPAGLECALQLARRGYAVTLAEAGPELGGRVTRESALPGLG 405


>gi|320165555|gb|EFW42454.1| squalene monooxygenase [Capsaspora owczarzaki ATCC 30864]
          Length = 527

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 28/176 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           DVI++G G  GC  AA  AK G    LI         I      P    A+  LG  + +
Sbjct: 73  DVIIVGAGILGCAMAATLAKDGRKVTLIERDLSEPDRIVGELLQPGGVAALRQLGLENCL 132

Query: 60  REIDALDG------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
             ID++          G+              + G +    R       + + ++     
Sbjct: 133 EGIDSVVENGYFVHYHGQAVQLTYPLDESGKTRAGRSFHHGR-------FIMKLREAARR 185

Query: 114 QENLDVIQGEVAGFN---TEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
           + N+ +I+G V          + +  +        +   +R    ++  G F +  
Sbjct: 186 ESNVTIIEGTVGTLLRAQDADSTVIGVEYQSKKTSETLTVRAPLTIVADGCFSKFR 241


>gi|291287486|ref|YP_003504302.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884646|gb|ADD68346.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 568

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 22/47 (46%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           DVIVIG G +G  AA  AA+ GAS  L+    S         A G  
Sbjct: 73  DVIVIGAGLSGLAAAISAAENGASVQLVDKNPSWAARGGHITAFGSK 119


>gi|220922820|ref|YP_002498122.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium nodulans ORS 2060]
 gi|219947427|gb|ACL57819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium nodulans ORS 2060]
          Length = 405

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           IV+GGG  G EAA   A+ G  T L+ H    +     + A   + K    R ++A    
Sbjct: 148 IVVGGGLLGLEAAVGLARRGVDTTLL-HVMDRLMERQLDHAAAEVVK----RAMEARGVR 202

Query: 69  MGRVADAAGIQ 79
           +   AD A I+
Sbjct: 203 VLLEADTAAIE 213


>gi|163815648|ref|ZP_02207021.1| hypothetical protein COPEUT_01823 [Coprococcus eutactus ATCC
          27759]
 gi|158449285|gb|EDP26280.1| hypothetical protein COPEUT_01823 [Coprococcus eutactus ATCC
          27759]
          Length = 524

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD+IVIG G AG  AA  AAK G    + 
Sbjct: 1  MIERYDLIVIGAGPAGLSAAIEAAKNGMRPIVF 33


>gi|194365001|ref|YP_002027611.1| hypothetical protein Smal_1223 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347805|gb|ACF50928.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Stenotrophomonas maltophilia R551-3]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 13/165 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G AG   A   A  G    ++  +     + +       +   H  R+     
Sbjct: 5   DVVVVGAGPAGLCFARALAGSGLQVGMVEVQPRQALAEAAFDG-REIALTHASRQSMEQL 63

Query: 67  GLMGRVADAAGIQFR---VLNVKKGPAVRGPRTQAD---------RELYRLAMQREILSQ 114
           GL  R+ DA   + R   V+N     A+     Q D           L R A    +  Q
Sbjct: 64  GLWQRLPDAEVAELRDAKVMNGGSPFALTFASGQVDGQPLGWLVPNHLIRRAAWDAVQDQ 123

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           + L++  G              + + D S +    +V     F  
Sbjct: 124 DGLELFDGRKVQSVQADAQGHVVTLDDGSTLHARLLVAADSRFSA 168


>gi|116254640|ref|YP_770476.1| nitrogen fixation FixC protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259288|emb|CAK10422.1| nitrogen fixation FixC protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 435

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IVIG G +G  AA   A  G                     L  +    I  
Sbjct: 1   MTKGKFDAIVIGAGMSGNAAAYSMASRGLKVLQLERGEHSGSKNVQGAILYANMLEAI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
               P         L R +      +   +   G+ +R  +  +   ++  R    R  +
Sbjct: 59  ---IPNFRDDA--PLERHLVEQRFWLMDDSSHTGVHYRSDDFNE---LKPNRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                 ++       + +          +  +  +   ++  +I    VVL  G
Sbjct: 111 DKWFSSKVRDAGGTILCETTATRLARNLRGKVVGVHTDREGGVILADVVVLAEG 164


>gi|13542109|ref|NP_111797.1| dehydrogenase (flavoprotein) [Thermoplasma volcanium GSS1]
 gi|14325540|dbj|BAB60443.1| electron transfer flavoprotein [Thermoplasma volcanium GSS1]
          Length = 428

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV VIG G AG  AA   A+ G +  L+
Sbjct: 3  EFDVAVIGAGPAGSSAAIRLAQNGMNVLLV 32


>gi|317404083|gb|EFV84536.1| FAD dependent oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 484

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--ID 63
           DV+++G G  G  AA   A+  G    ++    +  G  S N   G    G L R   I+
Sbjct: 79  DVVIVGSGFTGLSAALALARDYGVRAVVLEANRAVWGCTSRNGGQGQNASGRLYRSQWIE 138

Query: 64  ALDGLMGRVADA 75
                  R  DA
Sbjct: 139 RWGLDTARRLDA 150


>gi|254477925|ref|ZP_05091310.1| oxidoreductase [Ruegeria sp. R11]
 gi|214028510|gb|EEB69346.1| oxidoreductase [Ruegeria sp. R11]
          Length = 431

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D+++IGGG+ GC AA  AA+LGA   L+   T   G    N  +   G     ++IDAL 
Sbjct: 32 DLVIIGGGYTGCSAALRAAELGAEVCLLEADTFGAGGSGRNVGLVNAGLWLPPKQIDALL 91

Query: 67 G 67
          G
Sbjct: 92 G 92


>gi|86136913|ref|ZP_01055491.1| hypothetical protein MED193_14602 [Roseobacter sp. MED193]
 gi|85826237|gb|EAQ46434.1| hypothetical protein MED193_14602 [Roseobacter sp. MED193]
          Length = 398

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + +D +VIG G AG  AA   A  G S  L+  K     S+     + G    +L ++  
Sbjct: 5   QVWDAVVIGAGPAGLMAAGELASAGHSVLLVEVKP----SLGRKFLMAGKSGLNLTKD-- 58

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
                     +    Q+R  +    P +      A +E 
Sbjct: 59  -------EPLERLLAQYRGASTSLAPIISAFDAAAIQEW 90


>gi|310826264|ref|YP_003958621.1| hypothetical protein ELI_0643 [Eubacterium limosum KIST612]
 gi|308737998|gb|ADO35658.1| hypothetical protein ELI_0643 [Eubacterium limosum KIST612]
          Length = 311

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  +DVI++GGG  G  AA   A+ G ST ++
Sbjct: 1  MENNKFDVIILGGGPGGYTAALYCARAGLSTMVL 34


>gi|282899083|ref|ZP_06307064.1| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195999|gb|EFA70915.1| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 575

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKL--GASTALIT----HKTSTIGSMSCNPAIGGLGKGHL 58
            +DV+++GGG AGC AA   A+       AL+      ++ ++ +     A         
Sbjct: 3   EHDVVIVGGGLAGCRAALEIARTDPSLKVALVAKTHPIRSHSVAAQGGMAASLKNVDTQD 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQA--- 98
             +  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  SWQAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHLGVLF-SRLPDGRIAQRAFGGH 121

Query: 99  --DRELYRL-----AMQREI---LSQENLDVIQG-EVAGFNTEKNIISSIVM-----QDN 142
             +R  Y       A+  E+   L +  + + Q   V     E N    +VM        
Sbjct: 122 SHNRTCYAADKTGHAILHELVSNLRRYGVQIYQEWYVTRLIMEDNEAKGLVMFHLLDSKI 181

Query: 143 SMIRCSTVVLTTGTFLR 159
           ++IR   ++  TG + R
Sbjct: 182 AVIRAKAIMFATGGYGR 198


>gi|229545982|ref|ZP_04434707.1| thioredoxin reductase [Enterococcus faecalis TX1322]
 gi|229308878|gb|EEN74865.1| thioredoxin reductase [Enterococcus faecalis TX1322]
          Length = 266

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|39968405|ref|XP_365593.1| hypothetical protein MGG_02295 [Magnaporthe oryzae 70-15]
 gi|145014138|gb|EDJ98779.1| hypothetical protein MGG_02295 [Magnaporthe oryzae 70-15]
          Length = 467

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 41/130 (31%), Gaps = 19/130 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLGKG 56
            YDV+VIGGG AG  AA    ++G S  LI           T            G +   
Sbjct: 28  DYDVVVIGGGSAGTHAATRLQQMGKSVLLIEKEDRLGRNVNTYKDAQTGATFDYGIVSLI 87

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPA---------VRGPRTQADRELYRLAM 107
           ++   +D    L G        QF V N K   A              +  D      A 
Sbjct: 88  NISATVDFCSSL-GVSLKKFNGQF-VPNEKSVGADFKQKTKAPTWPLASGDDVTAALKAY 145

Query: 108 QREILSQENL 117
           Q+ +     L
Sbjct: 146 QQVLEKYPYL 155


>gi|125717964|ref|YP_001035097.1| dihydrolipoamide dehydrogenase [Streptococcus sanguinis SK36]
 gi|125497881|gb|ABN44547.1| Dihydrolipoamide dehydrogenase, putative [Streptococcus sanguinis
           SK36]
          Length = 446

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++   +   T  ++ C P+   L  GH    + 
Sbjct: 4   YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKNSIGGTCLNVGCIPSKAYLQHGHWLLTME 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           ++   I F  L  +K   V   ++        L           ++ I
Sbjct: 64  EARRYG----IESNLERIDFEKLVDRKNQVVASLQSGIHASFKSL----------GIEYI 109

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           QG+          +      +   I    V+L TG++
Sbjct: 110 QGQAKFVKDRTFSV------NGKEISGKDVILATGSY 140


>gi|124022094|ref|YP_001016401.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9303]
 gi|123962380|gb|ABM77136.1| Putative thioredoxin reductase [Prochlorococcus marinus str. MIT
          9303]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M     DV+++GGG AGC  A   ++    T ++      +G+++    I          
Sbjct: 1  METIEADVVIVGGGPAGCSCALYTSRADLKTVILDKNPD-VGALAITHQIANYPGVSSEM 59

Query: 61 EIDALDGLMGRVADAAGIQFR 81
            +AL  LM   A + G  +R
Sbjct: 60 SGEALLALMREQAVSFGSDYR 80


>gi|260905169|ref|ZP_05913491.1| reductase [Brevibacterium linens BL2]
          Length = 661

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS------MSCNPAIGGLGKGHLVRE 61
           V+VIGGG AG +AAAV+A+ G    L   ++   G+      +      GG    +L+ E
Sbjct: 396 VLVIGGGPAGLKAAAVSAEQGDDVVLCERESHLGGAVLLAQKLPYRTEFGGAA-TNLIAE 454

Query: 62  IDALDGLMGRVADAAGIQFRVLNV-----KKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                  +    +        L         G   R P  +   + + +  +  +  + N
Sbjct: 455 AMRAGVDLRTSTEVTQTMLEQLRADHVIVATGARQRMPHLEIADDAWVIGARAYLEREPN 514

Query: 117 L 117
           L
Sbjct: 515 L 515


>gi|33863818|ref|NP_895378.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9313]
 gi|33635401|emb|CAE21726.1| Putative thioredoxin reductase [Prochlorococcus marinus str. MIT
          9313]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M     DV+++GGG AGC  A   ++    T ++      +G+++    I          
Sbjct: 1  METIEADVVIVGGGPAGCSCALYTSRADLKTVILDKNPD-VGALAITHQIANYPGVSSEM 59

Query: 61 EIDALDGLMGRVADAAGIQFR 81
            +AL  LM   A + G  +R
Sbjct: 60 SGEALLALMREQAVSFGSDYR 80


>gi|103487991|ref|YP_617552.1| mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
 gi|98978068|gb|ABF54219.1| Mercuric reductase MerA [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD+IV+GGG AG  AA  AA+ GA  A+       IG+ +       +G       I 
Sbjct: 14  KKYDLIVVGGGSAGFSAAITAAEQGAQVAV-------IGAGTIGGTCVNVGCVPSKALIR 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----LYRLAMQREILSQENLD 118
           A++ +    A+AA ++F  +      A  G +  A+++     L +      +    N+ 
Sbjct: 67  AVESIH--HANAAPMRFNGVEAGARMADWG-KVIAEKDSLVSGLRQAKYADLLPLYNNIA 123

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             +G       E  + +              +V+ TGT
Sbjct: 124 YHEGTAR--LVENGVEAG-----GRRFTADRIVIATGT 154


>gi|296188796|ref|ZP_06857177.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
          carboxidivorans P7]
 gi|296046631|gb|EFG86084.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
          carboxidivorans P7]
          Length = 126

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDVI+IG G AG  AA  +A+    T ++
Sbjct: 1  MNNIYDVIIIGSGPAGLSAAIYSARARLKTLIL 33


>gi|257054391|ref|YP_003132223.1| geranylgeranyl reductase family protein [Saccharomonospora viridis
           DSM 43017]
 gi|256584263|gb|ACU95396.1| geranylgeranyl reductase family protein [Saccharomonospora viridis
           DSM 43017]
          Length = 424

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 33/180 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV-- 59
           +    +VIV+G G AG   A   A+ G    L+  KT       C   +   G   L+  
Sbjct: 1   MTHDAEVIVVGAGPAGSTVATYLARAGVDVLLLE-KTGFPREKVCGDGLTPRGVKQLIDL 59

Query: 60  -------------REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
                        R +    G +    D         ++   P     RT+ D +   L 
Sbjct: 60  GIDTSREAGWMHNRGLRIFTGELMLELD-------WPDLTSYPPYGVSRTRHDFDE--LL 110

Query: 107 MQREILSQENLDVIQGEVAGFNTEKN--IISSIVMQDNSM-----IRCSTVVLTTGTFLR 159
            +  + +   L + +  V G  T++    +  +  +          R   V+   G   R
Sbjct: 111 AKTAVEAGARL-LERTTVTGAITDERTGRVVGVEAKRGPERKPVSYRAPLVLACDGVSAR 169


>gi|229017776|ref|ZP_04174662.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1273]
 gi|229023996|ref|ZP_04180474.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1272]
 gi|228737303|gb|EEL87820.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1272]
 gi|228743517|gb|EEL93631.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1273]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          R +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  V +  
Sbjct: 2  RKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTVNKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|94496247|ref|ZP_01302825.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
 gi|94424426|gb|EAT09449.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M +  YDV+VIG G  G  AA  AA+LG  TA 
Sbjct: 1  MADYDYDVLVIGAGPGGYVAAIRAAQLGLKTAC 33


>gi|330973223|gb|EGH73289.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. aceris str. M302273PT]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330961355|gb|EGH61615.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. maculicola str. ES4326]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330954498|gb|EGH54758.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae Cit 7]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330942643|gb|EGH45214.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. pisi str. 1704B]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330897616|gb|EGH29035.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. japonica str. M301072PT]
 gi|330982235|gb|EGH80338.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. aptata str. DSM 50252]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330889117|gb|EGH21778.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. mori str. 301020]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330881528|gb|EGH15677.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. glycinea str. race 4]
          Length = 239

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|298486421|ref|ZP_07004482.1| Soluble pyridine nucleotide transhydrogenase [Pseudomonas
          savastanoi pv. savastanoi NCPPB 3335]
 gi|298159049|gb|EFI00109.1| Soluble pyridine nucleotide transhydrogenase [Pseudomonas
          savastanoi pv. savastanoi NCPPB 3335]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|296167530|ref|ZP_06849882.1| succinate dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295897152|gb|EFG76761.1| succinate dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 638

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +YDVIVIG G AG  A   A + G   A++       G      A GG    
Sbjct: 7  HAYDVIVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|289679726|ref|ZP_06500616.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. syringae FF5]
          Length = 275

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|261886228|ref|ZP_06010267.1| flavocytochrome c flavin subunit [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 116

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------KG 56
          +  +DV+V+G G AG  AA  A   G  T L       +  +  N AI G        K 
Sbjct: 33 DEEWDVLVVGSGFAGTAAACQAIDEGVKTLL----IDKMPVLGGNSAINGGAFAVVNSKF 88

Query: 57 HLVREID 63
            VR ID
Sbjct: 89 QKVRGID 95


>gi|257484409|ref|ZP_05638450.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. tabaci ATCC 11528]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|255324216|ref|ZP_05365338.1| dihydrolipoyl dehydrogenase [Corynebacterium tuberculostearicum
          SK141]
 gi|255298732|gb|EET78027.1| dihydrolipoyl dehydrogenase [Corynebacterium tuberculostearicum
          SK141]
          Length = 470

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+V+G G  G  AA  AA+LG   A+I
Sbjct: 1  MTNEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVI 34


>gi|237797691|ref|ZP_04586152.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. oryzae str. 1_6]
 gi|331020541|gb|EGI00598.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. oryzae str. 1_6]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|227502498|ref|ZP_03932547.1| dihydrolipoamide dehydrogenase [Corynebacterium accolens ATCC
          49725]
 gi|306835072|ref|ZP_07468115.1| dihydrolipoyl dehydrogenase [Corynebacterium accolens ATCC 49726]
 gi|227076771|gb|EEI14734.1| dihydrolipoamide dehydrogenase [Corynebacterium accolens ATCC
          49725]
 gi|304569053|gb|EFM44575.1| dihydrolipoyl dehydrogenase [Corynebacterium accolens ATCC 49726]
          Length = 470

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+V+G G  G  AA  AA+LG   A+I
Sbjct: 1  MTNEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVI 34


>gi|167043932|gb|ABZ08620.1| putative FAD binding domain protein [uncultured marine
          crenarchaeote HF4000_APKG3H9]
          Length = 328

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD+I++G G AG  A   AA+  +   +       +       A GG        E D+
Sbjct: 9  DYDLIIVGSGLAGLRATIQAARRNSKIRIAVISKVQVMRSHSVSAEGGTAAVLFPDEGDS 68

Query: 65 LDGLM 69
          ++  +
Sbjct: 69 IESHI 73


>gi|196039881|ref|ZP_03107184.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196029140|gb|EDX67744.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G+   ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGSKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|118573888|sp|Q4ZV77|STHA_PSEU2 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|71735155|ref|YP_274087.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. phaseolicola 1448A]
 gi|289624083|ref|ZP_06457037.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. aesculi str. NCPPB3681]
 gi|289648575|ref|ZP_06479918.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. aesculi str. 2250]
 gi|118573885|sp|Q48KI8|STHA_PSE14 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|71555708|gb|AAZ34919.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. phaseolicola 1448A]
 gi|320324792|gb|EFW80864.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. glycinea str. B076]
 gi|320329158|gb|EFW85155.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. glycinea str. race 4]
 gi|330986251|gb|EGH84354.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. lachrymans str. M301315]
          Length = 464

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|34497958|ref|NP_902173.1| transmembrane protein [Chromobacterium violaceum ATCC 12472]
 gi|34103813|gb|AAQ60174.1| probable Transmembrane protein [Chromobacterium violaceum ATCC
          12472]
          Length = 391

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           +DVIVIG G AG   AA A + G S  L+ H
Sbjct: 2  QFDVIVIGAGAAGLMCAATAGQRGRSVLLLDH 33


>gi|66045142|ref|YP_234983.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. syringae B728a]
 gi|63255849|gb|AAY36945.1| FAD-dependent pyridine nucleotide-disulphide
          oxidoreductase:Pyridine nucleotide-disulphide
          oxidoreductase dimerisation region [Pseudomonas
          syringae pv. syringae B728a]
          Length = 477

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 14 MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 73

Query: 61 EI 62
          +I
Sbjct: 74 QI 75


>gi|6685410|sp|O65726|ERG12_BRANA RecName: Full=Squalene monooxygenase 1,2; AltName: Full=Squalene
           epoxidase 1,2; Short=SE 1,2
 gi|3123352|emb|CAA06770.1| squalene epoxidase homologue [Brassica napus]
          Length = 518

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGL------GKGHLV 59
           DVI++G G  G   A   AK G    +I       +  M      GG       G    +
Sbjct: 50  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCL 109

Query: 60  REIDALDGLMGRV---ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            EIDA      R+          F V      P     R       +   ++++  S  N
Sbjct: 110 EEIDAQKSTGIRLFKDGKETVACFPVD--TNFPYEPSGRF-FHNGRFVQRLRQKASSLPN 166

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK ++  +
Sbjct: 167 VRLEEGTVRSLIEEKGVVKGV 187


>gi|94310986|ref|YP_584196.1| dihydrolipoamide dehydrogenase [Cupriavidus metallidurans CH34]
 gi|93354838|gb|ABF08927.1| dihydrolipoamide dehydrogenase (E3 component) [Cupriavidus
          metallidurans CH34]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +++ +DV+VIG G  G  AA  AA+LG + A +   
Sbjct: 1  MSKQFDVLVIGAGPGGYIAAIRAAQLGLNVACLEGN 36


>gi|283850646|ref|ZP_06367933.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio sp. FW1012B]
 gi|283573889|gb|EFC21862.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio sp. FW1012B]
          Length = 309

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD +VIGGG AG  AA   A+   S AL+
Sbjct: 2  KRYDAVVIGGGPAGMTAALYLARSDVSVALV 32


>gi|259415962|ref|ZP_05739882.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Silicibacter sp. TrichCH4B]
 gi|259347401|gb|EEW59178.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Silicibacter sp. TrichCH4B]
          Length = 557

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          + S DVIVIG G AG  AA   A  G    L+  + +       + ++GG
Sbjct: 7  DNSADVIVIGAGLAGLVAANELADRGKQVILLEQEPAHFLGGQAHWSLGG 56


>gi|222110349|ref|YP_002552613.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY]
 gi|221729793|gb|ACM32613.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY]
          Length = 475

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIVIG G  G  AA  AA+LG   A +
Sbjct: 1  MEMHFDVIVIGAGPGGYIAAIRAAQLGMKVACV 33


>gi|116074694|ref|ZP_01471955.1| geranylgeranyl hydrogenase [Synechococcus sp. RS9916]
 gi|116067916|gb|EAU73669.1| geranylgeranyl hydrogenase [Synechococcus sp. RS9916]
          Length = 451

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA + AK G  T L   K     +  C    GG     +V E D  D 
Sbjct: 4   VAVVGGGPSGSCAAEILAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPD- 56

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               + D      ++++       ++      D   Y    +RE+        ++   A 
Sbjct: 57  ---EIIDRKVRNMKMISPSNREVDIKLDPLGYDDNAYIGMCRREVFD----AFLRNRAAD 109

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                       + +  + +     + TG+  +G   +       G
Sbjct: 110 L--------GTTLVNGLVQK-----IDTGSNRQGPYILHYADYSGG 142


>gi|90423215|ref|YP_531585.1| HI0933-like protein [Rhodopseudomonas palustris BisB18]
 gi|90105229|gb|ABD87266.1| HI0933-like protein [Rhodopseudomonas palustris BisB18]
          Length = 399

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +YDVI++G G AG   A VAAK G S  LI  
Sbjct: 10 TYDVIILGAGAAGLMCAGVAAKRGRSVLLIEQ 41


>gi|41407677|ref|NP_960513.1| hypothetical protein MAP1579c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396030|gb|AAS03896.1| hypothetical protein MAP_1579c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 410

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 12/162 (7%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+G G  G E AA A + G           T+   +  P       G  V E+ A     
Sbjct: 151 VVGAGWIGLEVAAAARQRGVEV--------TVVEAARQPLTA--ALGETVGEVFATLHRE 200

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
            RV      Q R +    G A  G RT     +   A+   + +Q N+++ +        
Sbjct: 201 HRVDLRLETQVREITRADGSAT-GLRTTDGSAIPADAVLVAVGAQPNIELAEAAGLSLAD 259

Query: 130 EKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              ++ +S+   D  +     +       LR  I        
Sbjct: 260 GGVLVDASLRTSDPDIYAVGDIAAAEHPLLRTRIRTEHWANA 301


>gi|313897029|ref|ZP_07830576.1| putative thioredoxin-disulfide reductase [Selenomonas sp. oral
          taxon 137 str. F0430]
 gi|312974476|gb|EFR39944.1| putative thioredoxin-disulfide reductase [Selenomonas sp. oral
          taxon 137 str. F0430]
          Length = 310

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1  MINRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M+ + +   D+I+IG G AG  AA  A ++   T ++ +  
Sbjct: 1  MMAKQHIEKDIIIIGAGMAGLTAALYAGRMNLRTLVLENSL 41


>gi|322434774|ref|YP_004216986.1| L-aspartate oxidase [Acidobacterium sp. MP5ACTX9]
 gi|321162501|gb|ADW68206.1| L-aspartate oxidase [Acidobacterium sp. MP5ACTX9]
          Length = 511

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 38/190 (20%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG--------- 56
           +D +V+GGG AG  A    A  G     +T    +    +   A GG+            
Sbjct: 4   FDFVVVGGGIAGLSAVVRLAGAG-RVLCVT--KESFAESNTAYAQGGIAVAMGGSEDVSL 60

Query: 57  HLVREIDALDGLMGRVADAA---------------------GIQFRVLNVKKGPAVRGPR 95
           HL   I A DGL+   A                         +   +L  ++G       
Sbjct: 61  HLADTIAAGDGLVNAAAAKVLVEQGPRRVEELLGWGTEFDRAVGGELLRTREGAHSLSRI 120

Query: 96  TQADRELYRLAMQREILSQ----ENLDVIQGEVA-GFNTEKNIISSIVMQDNSMIRCSTV 150
             A+ +     + R +L      +N+++    V      EK  +  +V+ D +       
Sbjct: 121 LHANGDATGREIARALLKYVQGLKNVELRDWTVTVDLMVEKGRVEGVVLLDKAGTLARVG 180

Query: 151 VLTTGTFLRG 160
                    G
Sbjct: 181 ARAVMIASGG 190


>gi|254502189|ref|ZP_05114340.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
          DFL-11]
 gi|222438260|gb|EEE44939.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
          DFL-11]
          Length = 466

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D+IVIG G AG  AA  AAK G    ++
Sbjct: 2  EHFDLIVIGSGPAGRRAAIQAAKFGYEVLVV 32


>gi|84516451|ref|ZP_01003810.1| hypothetical protein SKA53_07566 [Loktanella vestfoldensis SKA53]
 gi|84509487|gb|EAQ05945.1| hypothetical protein SKA53_07566 [Loktanella vestfoldensis SKA53]
          Length = 434

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIG G+ G  AA   A+ G    ++    +  G+   N    G G     + +    
Sbjct: 38  DVCVIGAGYTGLSAAWHLAQKGLDVVVLDAHRAGFGASGRNGGQVGTGYNASQQSLARKL 97

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ 97
           G     A  A  +    +V++  A   P  Q
Sbjct: 98  GAGNATALWALAEEAKADVRRICADHIPEAQ 128


>gi|309792499|ref|ZP_07686963.1| amine oxidase [Oscillochloris trichoides DG6]
 gi|308225487|gb|EFO79251.1| amine oxidase [Oscillochloris trichoides DG6]
          Length = 514

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DVIVIGGG AG  AA   A+ G    LI    
Sbjct: 5  DVIVIGGGLAGLTAALHLAEAGVRPLLIESDV 36


>gi|302553114|ref|ZP_07305456.1| monoamine oxidase [Streptomyces viridochromogenes DSM 40736]
 gi|302470732|gb|EFL33825.1| monoamine oxidase [Streptomyces viridochromogenes DSM 40736]
          Length = 454

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIV+G G AG  AA      G    L+
Sbjct: 1  MKEDFDVIVVGAGLAGVTAARELKAQGKRVLLL 33


>gi|167645383|ref|YP_001683046.1| FAD dependent oxidoreductase [Caulobacter sp. K31]
 gi|167347813|gb|ABZ70548.1| FAD dependent oxidoreductase [Caulobacter sp. K31]
          Length = 450

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 54/162 (33%), Gaps = 13/162 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  + +VIG G AG  AA V AK G   A++    + +G  S      G         
Sbjct: 1   MGQHVETLVIGAGPAGLTAAYVLAKAGRDVAVLEMDPNQVGGSSRTIDHHG-------FR 53

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD--RELYRLAMQREILSQENLDV 119
           ID   G     +      +  L +  G   + PRT     R+ +     + + +  +L +
Sbjct: 54  IDLSGGAYASASARVLDLWSEL-LPDGFVEQ-PRTARIYHRDRFYAYPLKTLEALAHLGL 111

Query: 120 IQGEV--AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             G    A F   K     +       IR       +    R
Sbjct: 112 RGGAACLASFGLAKIRPIKVPKSLGDEIRNRFGAKLSSMLFR 153


>gi|149179876|ref|ZP_01858381.1| reductase [Bacillus sp. SG-1]
 gi|148852068|gb|EDL66213.1| reductase [Bacillus sp. SG-1]
          Length = 305

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + ++YD I++GGG AG +AA    +      ++           C   + G   G    +
Sbjct: 1   MKKTYDCIIVGGGIAGLQAAIQLGRYQHDILVVDSNDGRSTICRCYHNLLGWPDGVSGEQ 60

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLD 118
           + +L       A++ G++F+   + K    +G       +      ++ +L+    +N+ 
Sbjct: 61  LRSLGRQQ---AESYGVEFQFDRIVKARNDKGEFILDGEDGKHYVARKLLLATGVMDNIP 117

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
            I+            +      D   ++   VV+
Sbjct: 118 KIENLKPCL---GLTVYVCPDCDGYEVKNKKVVI 148


>gi|16124891|ref|NP_419455.1| hypothetical protein CC_0638 [Caulobacter crescentus CB15]
 gi|221233611|ref|YP_002516047.1| NAD(FAD)-utilizing dehydrogenase [Caulobacter crescentus NA1000]
 gi|13421851|gb|AAK22623.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962783|gb|ACL94139.1| NAD(FAD)-utilizing dehydrogenase [Caulobacter crescentus NA1000]
          Length = 415

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          DV VIGGG AG  AA   AK G S A+       + +      + G G  +L    D
Sbjct: 20 DVAVIGGGPAGLMAAETVAKAGRSVAVF----EKMPTFGRKFLMAGRGGLNLTHSED 72


>gi|84579321|dbj|BAE73094.1| hypothetical protein [Macaca fascicularis]
          Length = 574

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +DA   +G M    ++         + +   V+  R       + +++++  +++ N 
Sbjct: 185 EGLDAQAVNGYMIHDQESKSEVQIPFPLSENNQVQSGRA-FHHGRFIMSLRKAAMAEPNA 243

Query: 118 DVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV--IHIGKLKIP 170
             I+G V     E + +  +        D   +     V+  G F +    +   K+ + 
Sbjct: 244 KFIEGVVLQLLEEDDAVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLISNKVSVS 303

Query: 171 A---GRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIWD 212
           +   G +  +      N              +     +T       G   R + +  + +
Sbjct: 304 SHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDVRGEMPR-NLREYMVE 362

Query: 213 KTEKQFADERLIPFSFMTDKITNRQIE 239
           K   Q  D    PF   T+    R + 
Sbjct: 363 KIYPQIPDHLKEPFLEATENSRLRSMP 389


>gi|15920713|ref|NP_376382.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus tokodaii
          str. 7]
 gi|13537505|dbj|BAB40683.1| succinate dehydrogenase complex subunit A [Sulfolobus tokodaii]
 gi|15621496|dbj|BAB65491.1| 566aa long hypothetical succinate dehydrogenase subunit A
          [Sulfolobus tokodaii str. 7]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M   SYDV+++G G AG  AA   A  G + A+I+
Sbjct: 1  MEKVSYDVVIVGAGLAGLMAAHEIASAGYNVAVIS 35


>gi|299149180|ref|ZP_07042241.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298512847|gb|EFI36735.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 624

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++GA T ++  +T  +G M  +  +     G+     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMGAVTLIVE-ETEWLGGMLTSAGVS-AVDGNYDLPA 80

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
                  G +AD  G     L+  K           +  +        + +++NL V   
Sbjct: 81  GLFGEFRGHLADYYGG----LDSLKT--GWVSSVLFEPSVGNKIFHEMVNAEKNLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     E +  I+ I MQD+++ + S  +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLERENDSWIAQIQMQDHTIKKVSAKILIDGTELGDIAKMCGVKYDIG 186


>gi|295677798|ref|YP_003606322.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Burkholderia sp. CCGE1002]
 gi|295437641|gb|ADG16811.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Burkholderia sp. CCGE1002]
          Length = 390

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK----TSTIGSMSCNPAIGGLGKGHL 58
           ++++D  VIGGG  G  AA    + G   AL+        +     S   A+    +  L
Sbjct: 5   HQTFDAAVIGGGLVGKTAALALTQAGLRVALLAQPCAALPAGAAFDSRVYALSSSSQALL 64

Query: 59  VREIDALDGL----MGRVADA--AGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREI 111
            R +     L    +G V D    G     L+     A V       +  +   A+   +
Sbjct: 65  ER-LRVWQALDHSRLGPVYDMRVYGDAHAELHFSAFQASVPQLAWIVESSVIERALDAAL 123

Query: 112 LSQENLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
             Q NL  I  + +   F+ +    +S+ + + +++    VV   G  
Sbjct: 124 RFQPNLTWIDTRAQALDFSVDS---ASVGLANGNVLEADLVVGADGAH 168


>gi|257419154|ref|ZP_05596148.1| thioredoxin reductase [Enterococcus faecalis T11]
 gi|257160982|gb|EEU90942.1| thioredoxin reductase [Enterococcus faecalis T11]
          Length = 289

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|257415951|ref|ZP_05592945.1| thioredoxin reductase [Enterococcus faecalis AR01/DG]
 gi|257157779|gb|EEU87739.1| thioredoxin reductase [Enterococcus faecalis ARO1/DG]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|254485679|ref|ZP_05098884.1| NAD binding site:Flavin-containing monooxygenase FMO [Roseobacter
          sp. GAI101]
 gi|214042548|gb|EEB83186.1| NAD binding site:Flavin-containing monooxygenase FMO [Roseobacter
          sp. GAI101]
          Length = 550

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSY--DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++++  DVIV+G G AG  AA  A   G    L+
Sbjct: 1  MADQNFKADVIVVGAGLAGMVAAHEAVLRGRRVLLV 36


>gi|149198994|ref|ZP_01876035.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
          protein [Lentisphaera araneosa HTCC2155]
 gi|149137989|gb|EDM26401.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
          protein [Lentisphaera araneosa HTCC2155]
          Length = 759

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 10/50 (20%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          D  V+GGG AG  AA  AA+ G    L          +   P +GG    
Sbjct: 20 DFAVVGGGLAGVSAAITAARHGLKVVL----------VQDRPVLGGNASS 59


>gi|330869870|gb|EGH04579.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. aesculi str. 0893_23]
          Length = 76

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A++  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|320536953|ref|ZP_08036938.1| pyridine nucleotide-disulfide oxidoreductase [Treponema phagedenis
           F0421]
 gi|320146188|gb|EFW37819.1| pyridine nucleotide-disulfide oxidoreductase [Treponema phagedenis
           F0421]
          Length = 387

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           I +  +V+VIGGG AG EAA  AA+ G +T LI  K
Sbjct: 101 IIKPCNVVVIGGGTAGLEAACTAAEHGCTTFLIEKK 136


>gi|260576564|ref|ZP_05844552.1| dihydrolipoamide dehydrogenase [Rhodobacter sp. SW2]
 gi|259021168|gb|EEW24476.1| dihydrolipoamide dehydrogenase [Rhodobacter sp. SW2]
          Length = 462

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 67/185 (36%), Gaps = 26/185 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           S+DVI+IG G  G   A  AA+LG   A++  +  T+G    ++ C P+   L   H + 
Sbjct: 3   SFDVIIIGAGPGGYVCAIRAAQLGLKVAVVEGR-DTLGGTCLNVGCIPSKALLHATHSLH 61

Query: 61  EID---ALDGLMGRV--ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           E     A  GL+G     D A +Q    +V  G   +G      +               
Sbjct: 62  ETHENFAKMGLIGASPKVDWARMQAYKDDVVSG-NTKGIEFLFKKNKVTWLKGWA----- 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC--------STVVLTTGTFLRGVIHIGKL 167
              +          E +   SIV+   S             TVV +TG    G +    L
Sbjct: 116 --SIPAAGQVKVGDEVHEAKSIVIATGSEAASLPGVTVDEKTVVTSTGALALGKVPKSLL 173

Query: 168 KIPAG 172
            I AG
Sbjct: 174 VIGAG 178


>gi|256962077|ref|ZP_05566248.1| thioredoxin reductase [Enterococcus faecalis Merz96]
 gi|293383098|ref|ZP_06629016.1| thioredoxin-disulfide reductase [Enterococcus faecalis R712]
 gi|293387749|ref|ZP_06632293.1| thioredoxin-disulfide reductase [Enterococcus faecalis S613]
 gi|312907312|ref|ZP_07766303.1| thioredoxin-disulfide reductase [Enterococcus faecalis DAPTO 512]
 gi|312909929|ref|ZP_07768777.1| thioredoxin-disulfide reductase [Enterococcus faecalis DAPTO 516]
 gi|256952573|gb|EEU69205.1| thioredoxin reductase [Enterococcus faecalis Merz96]
 gi|291079763|gb|EFE17127.1| thioredoxin-disulfide reductase [Enterococcus faecalis R712]
 gi|291082819|gb|EFE19782.1| thioredoxin-disulfide reductase [Enterococcus faecalis S613]
 gi|310626340|gb|EFQ09623.1| thioredoxin-disulfide reductase [Enterococcus faecalis DAPTO 512]
 gi|311289887|gb|EFQ68443.1| thioredoxin-disulfide reductase [Enterococcus faecalis DAPTO 516]
 gi|315170029|gb|EFU14046.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX1342]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|255975999|ref|ZP_05426585.1| thioredoxin reductase [Enterococcus faecalis T2]
 gi|255968871|gb|EET99493.1| thioredoxin reductase [Enterococcus faecalis T2]
          Length = 288

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|261820347|ref|YP_003258453.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Pectobacterium wasabiae WPP163]
 gi|261604360|gb|ACX86846.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Pectobacterium wasabiae WPP163]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 37/208 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S D+++IG G AG  A   +A+ GA   L+  +    G+ +    I         R+
Sbjct: 32  IPKSADIVIIGAGAAGTSATMASAEKGAKIVLLEKQPIVGGTGNFAEGIFAANSSMQKRQ 91

Query: 62  IDALDGLMG-RVADAAGIQFRVLNVKKGPAVRGP------RTQADRELY----------- 103
              +   M  +             V +    R        +++  +  Y           
Sbjct: 92  GIVVTPDMAFKTIMEYSHWMANPFVVRAFVNRSADTIEWVKSKGIKFEYIGPGGPGGMLT 151

Query: 104 -------------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIR-- 146
                              +  S +   +++        +   ++ ++ Q  D +  +  
Sbjct: 152 WHVIDGPGHGRHLIKTFHEQFKSMDVTTLVKTAGKDLVVKDGKVTGVIAQDSDGNTFQID 211

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
              V++ TG +          K  A   
Sbjct: 212 AKAVIIATGGYANNK--EMLQKYAAFPD 237


>gi|227329149|ref|ZP_03833173.1| putative flavoprotein subunit of a reductase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 37/208 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S D+++IG G AG  A   AA+ GA   L+  +    G+ +    I         R+
Sbjct: 32  IPKSADIVIIGAGAAGTSATMAAAEKGAKIVLLEKQPIVGGTGNFAEGIFAANSSMQKRQ 91

Query: 62  IDALDGLMGRVADAAGIQFRV--------LNVKK----------------GPAVRGPRTQ 97
              +   M          +          +N                   GP   G    
Sbjct: 92  GIVVTPDMAFKTIMEYSHWMANPFVVRAFVNRSADTIEWVKSKGIKFEYIGPGGPGGMLT 151

Query: 98  ---ADRELYRLAMQREILSQ----ENLDVIQGEVAGFNTEKNIISSIVMQDNS----MIR 146
               D   +   + +    Q    +   +++        +   ++ ++ QD+      I 
Sbjct: 152 WHVIDGPGHGRHLIKTFHEQFKTMDVTTLVKTAGKDLVVKDGKVTGVIAQDSEGNTVQID 211

Query: 147 CSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
              V++ TG +          K  A   
Sbjct: 212 AKAVIIATGGYANNK--EMLQKYAAFPD 237


>gi|256384145|gb|ACU78715.1| thioredoxin-disulfide reductase [Mycoplasma mycoides subsp. capri
          str. GM12]
 gi|256384977|gb|ACU79546.1| thioredoxin-disulfide reductase [Mycoplasma mycoides subsp. capri
          str. GM12]
 gi|296455427|gb|ADH21662.1| thioredoxin-disulfide reductase [synthetic Mycoplasma mycoides
          JCVI-syn1.0]
          Length = 310

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + N  YDVI+IG G AG  +A   A+ G  T +    
Sbjct: 4  LTNEIYDVIIIGSGPAGLTSAIYTARAGLKTVIYEQS 40


>gi|218281541|ref|ZP_03487970.1| hypothetical protein EUBIFOR_00535 [Eubacterium biforme DSM 3989]
 gi|218217330|gb|EEC90868.1| hypothetical protein EUBIFOR_00535 [Eubacterium biforme DSM 3989]
          Length = 640

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG AG EAA VA K G    L        G +    A   + K  L + I     
Sbjct: 380 VLVIGGGPAGMEAAYVAKKRGHEVVLCEKSNELGGQLR--LAAVPIAKQELCKVIK---- 433

Query: 68  LMGRVADAAGIQFRVLNVK 86
            M R  D  G++ R LN +
Sbjct: 434 FMIRRLDHEGVEVR-LNTE 451


>gi|153009128|ref|YP_001370343.1| hypothetical protein Oant_1798 [Ochrobactrum anthropi ATCC 49188]
 gi|151561016|gb|ABS14514.1| HI0933 family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 118/420 (28%), Gaps = 69/420 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIG G AG   A  AAK G S  ++        +      I G G+ +      +  
Sbjct: 5   DIVVIGAGAAGMMCAIEAAKRGRSVLVV----DHAKAAGEKIRISGGGRCNFTNLHASPK 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             + +              +   A+         E +R+A   + L Q   D    ++  
Sbjct: 61  NYLSQNPHFCISAMSRYTQRDFIALV--------ERHRIAYHEKTLGQLFCDGSALQIIE 112

Query: 127 FNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +       ++    +     +    T     G +    L +  G     P     +
Sbjct: 113 MLLGEMKRHGARLKLGCSVSSVEKSAHGFTLQLTDGPVRCRSLVVACG-GKSIPKMGATS 171

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITR 244
                    G     T   L   T   +  E+            +     +  + CG   
Sbjct: 172 FGYDIATQFGLRIVETRPALVPLTFEPNTLERLKP---------LAGVAVDAVVSCG--- 219

Query: 245 TNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              +T         H  I    I      +    E +I    E +  +   E    N   
Sbjct: 220 ---KTKFAEAMLFTHRGISGPSILQISSYWREGDEIRIAMLPETDIFEALREQRKQNGK- 275

Query: 305 VYPNGISTALPEEIQHQFIRTI----------PGLEKVNIIRPGYAIEYDYINP------ 348
                + TAL   +  +  +TI            +      R   AI    I P      
Sbjct: 276 ---QALQTALALYLPRKLAQTIAEEIGATGHLADMSDKMFRRVEAAINDWRIKPAGSEGY 332

Query: 349 ------------KELFP-TLETKKISGLFLAGQINGTTGYEE------AAAQGLVAGINS 389
                       ++L   T+E K + GLF  G++   TG+        A + G VAG  +
Sbjct: 333 RTAEVTLGGVDTRDLDSKTMEAKSVPGLFFIGEVVDVTGWLGGYNFQWAWSSGWVAGQAA 392


>gi|326795650|ref|YP_004313470.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Marinomonas mediterranea MMB-1]
 gi|326546414|gb|ADZ91634.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Marinomonas mediterranea MMB-1]
          Length = 385

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS---MSCNPAIGGLGK 55
          +N  YD+IV+GGG AG   A + A+ G + ALI         +G     S NP +  LG 
Sbjct: 1  MNTQYDLIVLGGGPAGLAVATLQARQGKTVALIDNSDPHAEKVGESVPASFNPLLKKLGL 60

Query: 56 GHLVRE 61
            L  E
Sbjct: 61 PELTDE 66


>gi|311107898|ref|YP_003980751.1| pyridine nucleotide-disulfide oxidoreductase family protein 7
           [Achromobacter xylosoxidans A8]
 gi|310762587|gb|ADP18036.1| pyridine nucleotide-disulfide oxidoreductase family protein 7
           [Achromobacter xylosoxidans A8]
          Length = 434

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 36/131 (27%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G AG   A   A+ G    L+  +    G+   N   GG          DA+ 
Sbjct: 35  DVCVVGAGLAGLSTALELARRGRDVTLLEGRRIAWGASGRN---GGSVSPAFSAGADAI- 90

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                                       R   D + YR   +   LS E +++I+  +  
Sbjct: 91  ----------------------------RKHVDEDHYRKLYR---LSMEGVEIIRNNIRD 119

Query: 127 F-NTEKNIISS 136
               +   +  
Sbjct: 120 LDIVDACKVDG 130


>gi|307279147|ref|ZP_07560205.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0860]
 gi|306504272|gb|EFM73484.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0860]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|317128476|ref|YP_004094758.1| FAD dependent oxidoreductase [Bacillus cellulosilyticus DSM 2522]
 gi|315473424|gb|ADU30027.1| FAD dependent oxidoreductase [Bacillus cellulosilyticus DSM 2522]
          Length = 437

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI++GGG AG  +AA  A  G   A+I
Sbjct: 1  MNKSQYDVIIVGGGLAGLSSAAYLAHNGKKVAVI 34


>gi|269216912|ref|ZP_06160766.1| fumarate reductase/succinate dehydrogenase flavoprotein, N-:FAD
           dependent oxidoreductase [Slackia exigua ATCC 700122]
 gi|269129719|gb|EEZ60803.1| fumarate reductase/succinate dehydrogenase flavoprotein, N-:FAD
           dependent oxidoreductase [Slackia exigua ATCC 700122]
          Length = 596

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  +D++V+G G  G  A+   A+ G S  ++     T G+   +      G GH   E 
Sbjct: 64  DEEFDIVVVGSGAGGMNASIRLAQAGYSVVMLERNPETGGNSQHSSVFSNFG-GHSQAEA 122

Query: 63  DAL 65
              
Sbjct: 123 AQW 125


>gi|320012543|gb|ADW07393.1| amine oxidase [Streptomyces flavogriseus ATCC 33331]
          Length = 524

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + SYD +V+GGGH G  AAA  A+ G S  ++    +T G+        G+    L R  
Sbjct: 14  HDSYDAVVVGGGHNGLVAAAYLARAGQSVLVLERLGATGGAAVSTRPFDGI-DARLSRYS 72

Query: 63  DALDGLMGRVADAAGIQFRVLNV---KKGPAVRGPRT 96
             +  L  ++    G+ F V         PAVRG R+
Sbjct: 73  YLVSLLPQKIVQELGLGFAVRKRTVSSYTPAVRGGRS 109


>gi|302536165|ref|ZP_07288507.1| electron transfer oxidoreductase [Streptomyces sp. C]
 gi|302445060|gb|EFL16876.1| electron transfer oxidoreductase [Streptomyces sp. C]
          Length = 427

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   S DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 5  LTEHSADVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|297192796|ref|ZP_06910194.1| electron transfer oxidoreductase [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197721015|gb|EDY64923.1| electron transfer oxidoreductase [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 428

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   S DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 5  LTEHSADVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|145539962|ref|XP_001455671.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423479|emb|CAK88274.1| unnamed protein product [Paramecium tetraurelia]
          Length = 486

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YD+ VIGGG  G   A  AAKLGA  AL          +     +GG         
Sbjct: 3   VEKQYDLFVIGGGSGGLACAKQAAKLGAKVALA--DFVKPSPLGTKWGLGGTCVNV---- 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                G + +           L   +  A     TQ D +      ++ + +  N
Sbjct: 57  -----GCIPKKLMHFAATLGELRHDQVEAGWVD-TQVDSKH---NWEKMVENVNN 102


>gi|29375905|ref|NP_815059.1| thioredoxin reductase [Enterococcus faecalis V583]
 gi|227518602|ref|ZP_03948651.1| thioredoxin reductase [Enterococcus faecalis TX0104]
 gi|229550168|ref|ZP_04438893.1| thioredoxin reductase [Enterococcus faecalis ATCC 29200]
 gi|255972945|ref|ZP_05423531.1| thioredoxin reductase [Enterococcus faecalis T1]
 gi|256618920|ref|ZP_05475766.1| thioredoxin reductase [Enterococcus faecalis ATCC 4200]
 gi|256762347|ref|ZP_05502927.1| thioredoxin reductase [Enterococcus faecalis T3]
 gi|256852977|ref|ZP_05558347.1| thioredoxin reductase [Enterococcus faecalis T8]
 gi|256958832|ref|ZP_05563003.1| thioredoxin reductase [Enterococcus faecalis DS5]
 gi|256965274|ref|ZP_05569445.1| thioredoxin reductase [Enterococcus faecalis HIP11704]
 gi|257078864|ref|ZP_05573225.1| thioredoxin reductase [Enterococcus faecalis JH1]
 gi|257082690|ref|ZP_05577051.1| thioredoxin reductase [Enterococcus faecalis E1Sol]
 gi|257085401|ref|ZP_05579762.1| thioredoxin reductase [Enterococcus faecalis Fly1]
 gi|257086895|ref|ZP_05581256.1| thioredoxin reductase [Enterococcus faecalis D6]
 gi|257089735|ref|ZP_05584096.1| thioredoxin reductase [Enterococcus faecalis CH188]
 gi|257422768|ref|ZP_05599758.1| thioredoxin reductase [Enterococcus faecalis X98]
 gi|294779838|ref|ZP_06745223.1| thioredoxin-disulfide reductase [Enterococcus faecalis PC1.1]
 gi|300860021|ref|ZP_07106109.1| thioredoxin-disulfide reductase [Enterococcus faecalis TUSoD
          Ef11]
 gi|307271172|ref|ZP_07552455.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX4248]
 gi|307273378|ref|ZP_07554623.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0855]
 gi|307277524|ref|ZP_07558616.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX2134]
 gi|307288165|ref|ZP_07568175.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0109]
 gi|307291323|ref|ZP_07571207.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0411]
 gi|312899368|ref|ZP_07758699.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0470]
 gi|312904082|ref|ZP_07763250.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0635]
 gi|312952343|ref|ZP_07771218.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0102]
 gi|29343367|gb|AAO81129.1| thioredoxin reductase [Enterococcus faecalis V583]
 gi|227073951|gb|EEI11914.1| thioredoxin reductase [Enterococcus faecalis TX0104]
 gi|229304606|gb|EEN70602.1| thioredoxin reductase [Enterococcus faecalis ATCC 29200]
 gi|255963963|gb|EET96439.1| thioredoxin reductase [Enterococcus faecalis T1]
 gi|256598447|gb|EEU17623.1| thioredoxin reductase [Enterococcus faecalis ATCC 4200]
 gi|256683598|gb|EEU23293.1| thioredoxin reductase [Enterococcus faecalis T3]
 gi|256711436|gb|EEU26474.1| thioredoxin reductase [Enterococcus faecalis T8]
 gi|256949328|gb|EEU65960.1| thioredoxin reductase [Enterococcus faecalis DS5]
 gi|256955770|gb|EEU72402.1| thioredoxin reductase [Enterococcus faecalis HIP11704]
 gi|256986894|gb|EEU74196.1| thioredoxin reductase [Enterococcus faecalis JH1]
 gi|256990720|gb|EEU78022.1| thioredoxin reductase [Enterococcus faecalis E1Sol]
 gi|256993431|gb|EEU80733.1| thioredoxin reductase [Enterococcus faecalis Fly1]
 gi|256994925|gb|EEU82227.1| thioredoxin reductase [Enterococcus faecalis D6]
 gi|256998547|gb|EEU85067.1| thioredoxin reductase [Enterococcus faecalis CH188]
 gi|257164592|gb|EEU94552.1| thioredoxin reductase [Enterococcus faecalis X98]
 gi|294453065|gb|EFG21482.1| thioredoxin-disulfide reductase [Enterococcus faecalis PC1.1]
 gi|300850839|gb|EFK78588.1| thioredoxin-disulfide reductase [Enterococcus faecalis TUSoD
          Ef11]
 gi|306497554|gb|EFM67087.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0411]
 gi|306500901|gb|EFM70219.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0109]
 gi|306505789|gb|EFM74967.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX2134]
 gi|306509905|gb|EFM78930.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0855]
 gi|306512670|gb|EFM81319.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX4248]
 gi|310629727|gb|EFQ13010.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0102]
 gi|310632558|gb|EFQ15841.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0635]
 gi|311293412|gb|EFQ71968.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0470]
 gi|315027419|gb|EFT39351.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX2137]
 gi|315030041|gb|EFT41973.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX4000]
 gi|315033741|gb|EFT45673.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0017]
 gi|315036827|gb|EFT48759.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0027]
 gi|315145648|gb|EFT89664.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX2141]
 gi|315147836|gb|EFT91852.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX4244]
 gi|315150686|gb|EFT94702.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0012]
 gi|315153306|gb|EFT97322.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0031]
 gi|315155916|gb|EFT99932.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0043]
 gi|315157916|gb|EFU01933.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0312]
 gi|315160266|gb|EFU04283.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0645]
 gi|315164219|gb|EFU08236.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX1302]
 gi|315166687|gb|EFU10704.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX1341]
 gi|315174419|gb|EFU18436.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX1346]
 gi|315578428|gb|EFU90619.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0630]
 gi|323480574|gb|ADX80013.1| thioredoxin-disulfide reductase [Enterococcus faecalis 62]
 gi|327534981|gb|AEA93815.1| thioredoxin-disulfide reductase [Enterococcus faecalis OG1RF]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|69248115|ref|ZP_00604630.1| Thioredoxin reductase [Enterococcus faecium DO]
 gi|258616616|ref|ZP_05714386.1| thioredoxin reductase [Enterococcus faecium DO]
 gi|68194552|gb|EAN09045.1| Thioredoxin reductase [Enterococcus faecium DO]
          Length = 308

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVIVIG G +G  AA  A++   S  +I  
Sbjct: 2  YDVIVIGAGPSGMTAALYASRSNLSVLMIEQ 32


>gi|297812577|ref|XP_002874172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320009|gb|EFH50431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 519

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G  G   A   AK G    +I         +      P     +  L     +
Sbjct: 50  DVIIVGAGVGGSALAYALAKDGRRVHIIERDMREPERMMGEFMQPGGRFMLSKLDLQDFL 109

Query: 60  REIDAL---DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             IDA       + +    A   F V N  K P     R+      +   ++++  S  N
Sbjct: 110 EGIDAQKATGMAVYKDGKEAVASFPVDN-NKFPYDPSARS-FHNGRFVQRLRQKASSLPN 167

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 168 VRLEEGTVRSLIEEKGVIKGV 188


>gi|260465451|ref|ZP_05812641.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum
          WSM2075]
 gi|259029755|gb|EEW31041.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum
          WSM2075]
          Length = 408

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVREIDA 64
          D +VIGGG AGC      A+ G  T ++        S   N    + G  K  +V  +DA
Sbjct: 13 DALVIGGGIAGCSLGYELARRGFKTTILEQSMIAAESSGRNTGTLLSGPQKE-VVELLDA 71

Query: 65 LDGLMGRVAD 74
             +   +AD
Sbjct: 72 SVAVYAELAD 81


>gi|229825807|ref|ZP_04451876.1| hypothetical protein GCWU000182_01170 [Abiotrophia defectiva ATCC
          49176]
 gi|229790370|gb|EEP26484.1| hypothetical protein GCWU000182_01170 [Abiotrophia defectiva ATCC
          49176]
          Length = 545

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1  MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N++ YDV +IGGG AG  AA   A+      ++
Sbjct: 1  MDNKNLYDVAIIGGGPAGLTAALYLARACYRVIVL 35


>gi|254410978|ref|ZP_05024756.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Microcoleus chthonoplastes PCC 7420]
 gi|196182333|gb|EDX77319.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Microcoleus chthonoplastes PCC 7420]
          Length = 514

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKL--GASTALITHKT---STIGSMSCNPAIGGLGKGHLVR 60
           YD++VIG G AG   AA AA +  G   ALI         +  + C P+   +    +V 
Sbjct: 38  YDLVVIGAGTAGLVTAAGAAGMDIGLKVALIERHLMGGDCLN-VGCVPSKCIIRSSRVVA 96

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           ++        R  +   I F  +  +    +R  R            ++      N+D+ 
Sbjct: 97  QMKEAGDFGIRPPEQIDIDFSAVMER----MRKLRAGISHHDSAQRFKQ----TYNIDIF 148

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
            GE   F     I        + ++R    V+TTG   R V    +     G + +    
Sbjct: 149 LGE-GSFQDSNTIAVG-----DKILRFKKAVITTGA--RAVRPSIEGIEETGFLTNETVF 200

Query: 181 SLFNSFMKFDFDTGRLKTGTPA-----RLDGKTIIWDK 213
           SL     +     G    G        RL  + I++ +
Sbjct: 201 SLTERPKRLAV-IGGGPIGCELAQAFRRLGCEVILFHR 237


>gi|308210755|dbj|BAJ22678.1| daidzein reductase [Lactococcus garvieae]
 gi|322229362|dbj|BAJ72750.1| daidzein reductase [Lactococcus garvieae]
          Length = 644

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VI+IG G AGCEAA  A K G    + 
Sbjct: 386 VIIIGAGPAGCEAAITAKKCGHDVTIY 412


>gi|284048579|ref|YP_003398918.1| HI0933 family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952800|gb|ADB47603.1| HI0933 family protein [Acidaminococcus fermentans DSM 20731]
          Length = 420

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 66/195 (33%), Gaps = 24/195 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIV+G G AG  AA  AA+ GA   L       +        I G G+ ++    D  D 
Sbjct: 4   VIVVGAGAAGILAAIKAAENGARVLL----LEKMAMPGRKLMITGKGRCNITNACDMRDM 59

Query: 67  ----------GLMGRVADAAGIQFRVLNVKKGP--AVRGPRT--QADRELYRLAMQREIL 112
                                    +L     P    RG R   Q+DR L  +   ++IL
Sbjct: 60  IPMIPGNGKFLFGAFHTFTNRDIMELLEENGLPVKVERGGRVFPQSDRALDVVDTLKKIL 119

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI----GKL 167
            ++ +++     V     E   ++ +V  D   +    VV+TTG               L
Sbjct: 120 RKKKVELRTNTRVRDLVLEGGRVTGVVTGDGRTLAADAVVITTGGASYPRTGSTGDGYGL 179

Query: 168 KIPAGRMGDSPSNSL 182
              AG     P  +L
Sbjct: 180 AREAGHTIVPPRPAL 194


>gi|257453549|ref|ZP_05618839.1| dihydrolipoyl dehydrogenase [Enhydrobacter aerosaccus SK60]
 gi|257449007|gb|EEV23960.1| dihydrolipoyl dehydrogenase [Enhydrobacter aerosaccus SK60]
          Length = 482

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  SYD+++IGGG  G EAA  A +LG S A I  + +        PA+GG 
Sbjct: 1  MKESYDLVIIGGGPGGYEAAIRAGQLGMSVACIEKRINK-----GEPALGGT 47


>gi|302553424|ref|ZP_07305766.1| electron transfer oxidoreductase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471042|gb|EFL34135.1| electron transfer oxidoreductase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 430

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   AK G    L+  KT+      C   +       LV     + 
Sbjct: 14  DVIVVGAGPAGSTTAYHLAKAGLDVLLLE-KTAFPREKVCGDGLTPRAVKQLVAMGIDIS 72

Query: 67  GLMGRVADA--------AGIQFRVLNVKKGP--AVRGPRTQADRELYRLAMQREILSQEN 116
              G + +           +Q    ++   P   +   R   D +L R A +      E 
Sbjct: 73  EEAGWLRNKGLRIIGGGVRLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYER 132

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLR 159
            +V    V         I+ +  +              VV   G   R
Sbjct: 133 CNVGAPVVDD---RTGRITGVHAKLGEDKREVTFHAPLVVAADGNSTR 177


>gi|108798220|ref|YP_638417.1| flavoprotein disulfide reductase [Mycobacterium sp. MCS]
 gi|119867316|ref|YP_937268.1| flavoprotein disulfide reductase [Mycobacterium sp. KMS]
 gi|108768639|gb|ABG07361.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Mycobacterium sp. MCS]
 gi|119693405|gb|ABL90478.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Mycobacterium sp. KMS]
          Length = 470

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVREID 63
           +++IGGG AG EAA VAA  G  T +    +  +G       C P+   +    +  E+ 
Sbjct: 7   IVIIGGGPAGYEAALVAA--GPETHVTVIDSDGVGGACVLYDCVPSKTFIASTGVRTELR 64

Query: 64  ALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI- 120
              GL     ++DA     ++ N  K  A    R+Q         +  ++L +E + VI 
Sbjct: 65  RATGLGFDISISDAKVSLPQIHNRVKTLA----RSQ------SADIGSQLL-REGVTVIG 113

Query: 121 -QGE-VAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLR 159
            +GE V            +   D    +++   V++ TG   R
Sbjct: 114 GRGELVDDVPGLAQHRVRVRTHDGKTGVLKADVVLIATGASPR 156


>gi|260461581|ref|ZP_05809828.1| amine oxidase [Mesorhizobium opportunistum WSM2075]
 gi|259032651|gb|EEW33915.1| amine oxidase [Mesorhizobium opportunistum WSM2075]
          Length = 521

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHLVRE 61
          S+D IVIGGGH G  AAA  AK G    ++   T   G+       P        HL+  
Sbjct: 3  SFDAIVIGGGHNGLIAAATLAKAGRKALVLEAGTEIGGAARTEEFAPGFRVSSVAHLLNR 62

Query: 62 ID 63
          + 
Sbjct: 63 LH 64


>gi|225575103|ref|ZP_03783713.1| hypothetical protein RUMHYD_03192 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037662|gb|EEG47908.1| hypothetical protein RUMHYD_03192 [Blautia hydrogenotrophica DSM
          10507]
          Length = 541

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG AG  AA   A+      ++
Sbjct: 9  YDVVVIGGGPAGLTAALYLARARYRVLVV 37


>gi|55376827|ref|YP_134678.1| thioredoxin reductase [Haloarcula marismortui ATCC 43049]
 gi|55229552|gb|AAV44972.1| thioredoxin reductase [Haloarcula marismortui ATCC 43049]
          Length = 326

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DVI++GGG AGC A    A+ G  T + 
Sbjct: 13 DHDVIIVGGGPAGCSAGVFTARAGLDTVIY 42


>gi|11133022|sp|Q43503|LCYB_SOLLC RecName: Full=Lycopene beta cyclase, chloroplastic; Flags:
           Precursor
 gi|1006673|emb|CAA60170.1| lycopene beta-cyclase [Solanum lycopersicum]
 gi|150014715|gb|ABR57232.1| beta-lycopene cyclase [Solanum lycopersicum]
          Length = 500

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E +A+D
Sbjct: 85  DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWP---------NNYGVWVDEFEAMD 135

Query: 67  GL-MGRVADAAGIQFRVLNVKKG---PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +    +   N  K    P  R  R    ++L    MQ+ I++   +   Q 
Sbjct: 136 LLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNR----KQLKSKMMQKCIMN--GVKFHQA 189

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E++  S ++  D   I+ + V+  TG F R ++   K   P           L
Sbjct: 190 KVIKVIHEESK-SMLICNDGITIQATVVLDATG-FSRSLVQYDK---PYNPGYQVAYGIL 244

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 245 AEV-EEHPFDVNKM 257


>gi|323701583|ref|ZP_08113255.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533356|gb|EGB23223.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfotomaculum nigrificans DSM 574]
          Length = 421

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +N+  DV++IG G +G  AAA AA+ G    L+      +G
Sbjct: 1  MNKYTDVLIIGAGLSGLMAAAKAAEQGKKVMLVAKGMGAVG 41


>gi|283480247|emb|CAY76163.1| Uncharacterized protein yhiN [Erwinia pyrifoliae DSM 12163]
          Length = 395

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +   +DVIVIG G AG   AA A + G    L                + G G+ +
Sbjct: 1  MVEKFDVIVIGAGAAGLFCAAQAGQKGRRVLL----IDNGKKAGRKILMSGGGRCN 52


>gi|260435236|ref|ZP_05789206.1| geranylgeranyl reductase [Synechococcus sp. WH 8109]
 gi|260413110|gb|EEX06406.1| geranylgeranyl reductase [Synechococcus sp. WH 8109]
          Length = 460

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  D 
Sbjct: 4   VAVIGGGPSGSCAAEILAKAGIETWLFERKLD--NAKPC----GGAIPLCMVEEFDLPD- 56

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               + D      ++++       ++      D   Y    +RE+        ++   A 
Sbjct: 57  ---EIIDRKVRNMKMISPSNREVDIKLDPLGYDENAYIGMCRREVFD----AFLRNRAAD 109

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                       + +  + +     + TGT  +G   I       G
Sbjct: 110 L--------GTTLINGLVQK-----IDTGTDRQGPYTIHYADYSGG 142


>gi|253687195|ref|YP_003016385.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251753773|gb|ACT11849.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 39/209 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S D+++IG G AG  A   AA+ GA   L+  +    G+ +    I         R+
Sbjct: 32  IPKSADIVIIGAGAAGTSATMAAAEKGAKIVLLEKQPIVGGTGNFAEGIFAANSSMQKRQ 91

Query: 62  IDALDGLMGRVADAAGIQFRV--------LNVKKGPAVRGPRTQADRELY---------- 103
              +   M          +          +N          +++  +  Y          
Sbjct: 92  GIVVTPDMAFKTIMDYSHWMANPFVVRAFVNRSADTIEWV-KSKGIKFEYIGPGGPGGML 150

Query: 104 --------------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS----MI 145
                               +  S +   +++        +   ++ ++ QD+      I
Sbjct: 151 TWHVIDGPGHGRHLIKTFHEQFKSMDVTTLVKTAGKDLVVKDGKVTGVIAQDSEGNTVQI 210

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               V++ TG +          K  A   
Sbjct: 211 DAKAVIIATGGYANNK--EMLQKYAAFPD 237


>gi|271967588|ref|YP_003341784.1| soluble pyridine nucleotide transhydrogenase [Streptosporangium
           roseum DSM 43021]
 gi|270510763|gb|ACZ89041.1| soluble pyridine nucleotide transhydrogenase [Streptosporangium
           roseum DSM 43021]
          Length = 467

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G G  G +AA  AAKLG   A++  K   +G +  N    G      +RE   
Sbjct: 3   DFDVLVLGSGPGGQKAAIAAAKLGKRVAVVE-KKHMLGGVCINT---GTIPSKTLREAVL 58

Query: 65  LDGLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVIQ 121
              L G    +  G  +RV +     A  G RTQ    RE   + + R  L + ++ V+Q
Sbjct: 59  Y--LTGLNQRELYGASYRVKDEITV-ADLGMRTQHVIGRE---IQVIRSQLGRNHVTVLQ 112

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           G     +     ++     +   +    VV+ TGT
Sbjct: 113 GTGRFLDAHTIGVTG---DEERKVTAEKVVIATGT 144


>gi|238501234|ref|XP_002381851.1| sarcosine oxidase, putative [Aspergillus flavus NRRL3357]
 gi|220692088|gb|EED48435.1| sarcosine oxidase, putative [Aspergillus flavus NRRL3357]
          Length = 381

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 73/249 (29%), Gaps = 15/249 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGGLGKGHLVREI 62
             YDV V+G G  G  AA  AA+ G         +   +   S + +        L   +
Sbjct: 2   EQYDVAVVGLGVLGSAAAYQAAQRGKKVIAFEQFEFGHVHGASHDTSRIIRTSNPLPEYV 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                     A+      + L    G  V  PR +A      L    ++ +  +  +   
Sbjct: 62  KLARSAYKDWAELEEATGQKLLTITGGLVFVPREKASPFE-SLINTLKVTNLPHEILNAT 120

Query: 123 EVAGFNTEKNI---ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           EV     + +I   + ++   D  +   S  V       R    I K   P  R+     
Sbjct: 121 EVKKRWPQFDIPDTVDAVYTADTGIAHASKTVAAMQYLARSKGAILKENTPVDRVVPKKE 180

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLD------GKTIIWDKTEKQFADERLIPFSFMTDKI 233
             +     K +F   ++   T A  +      G  I     ++Q    +       T   
Sbjct: 181 GGVTIQTPKGEFHAAKVILTTDAWTNKLLAPLGVHIPLSVMQEQVTYFKPT----DTAAF 236

Query: 234 TNRQIECGI 242
              +    I
Sbjct: 237 QPNRFPVWI 245


>gi|157362977|ref|YP_001469744.1| hypothetical protein Tlet_0110 [Thermotoga lettingae TMO]
 gi|157313581|gb|ABV32680.1| conserved hypothetical protein [Thermotoga lettingae TMO]
          Length = 415

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++DV V GGG AG  AA  A + G    LI   
Sbjct: 2  NWDVAVFGGGLAGVSAAVNAKRAGKKVILIEQN 34


>gi|33242193|ref|NP_877134.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae TW-183]
 gi|33236704|gb|AAP98791.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae TW-183]
          Length = 461

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           + + +D +VIG G +G  AA  AA+    TALI    +  T  +  C P+   +   ++V
Sbjct: 1   MTQEFDCVVIGAGPSGYVAAITAAQSKLRTALIEEDQAGGTCLNRGCIPSKALIAGANVV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             I   +   G   D   I +  +  +K   V+G R   +  +              + V
Sbjct: 61  SHITHAE-QFGIHVDGYTIDYPAMAKRKNTVVQGIRQGLEGLIRSNK----------ITV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           ++G   G       +  ++ QD ++I+ + ++L TG+
Sbjct: 110 LKG--TGSLVSSTEVK-VIGQDTTIIKANHIILATGS 143


>gi|329896453|ref|ZP_08271531.1| Oxidoreductase, FAD-binding [gamma proteobacterium IMCC3088]
 gi|328921771|gb|EGG29143.1| Oxidoreductase, FAD-binding [gamma proteobacterium IMCC3088]
          Length = 434

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVR 60
           +   DV VIG G  G  AA     LG +  ++  KT   G+   N    G+G  +G L+ 
Sbjct: 26  DHHTDVCVIGAGLTGLSAAIALRDLGLNVVVLEAKTIGYGASGRNGGHVGIGQRRGQLIL 85

Query: 61  EIDALDGLMGRVADAAGIQFRVL 83
           E   L     +     G++   L
Sbjct: 86  E-RWLGLEHAKALWQLGLEAVNL 107


>gi|316934655|ref|YP_004109637.1| hypothetical protein Rpdx1_3333 [Rhodopseudomonas palustris DX-1]
 gi|315602369|gb|ADU44904.1| HI0933 family protein [Rhodopseudomonas palustris DX-1]
          Length = 410

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          D  VIG G AG  AA   A+ GA   +       +G+ +    + G G  +L   
Sbjct: 8  DAAVIGAGPAGLMAAEQLAQAGARVTVF----DGMGAPARKFLLAGRGGLNLTHS 58


>gi|295701372|ref|YP_003610373.1| glucose-inhibited division protein A [Burkholderia sp. CCGE1002]
 gi|295441695|gb|ADG20862.1| glucose-inhibited division protein A [Burkholderia sp. CCGE1002]
          Length = 372

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ R+ DV V+GGG AGC  A   A+ G   A++
Sbjct: 12 VLPRTLDVTVMGGGPAGCATAIALARRGVVVAML 45


>gi|197104435|ref|YP_002129812.1| nitrite reductase (NAD(P)H) large subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477855|gb|ACG77383.1| nitrite reductase (NAD(P)H) large subunit [Phenylobacterium
           zucineum HLK1]
          Length = 820

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 34/199 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +VIGGG  G EAA   A+ G A+T +                        + R++DA  G
Sbjct: 152 VVIGGGLLGIEAAYGLARRGMAATVVHLMDV------------------LMERQLDASAG 193

Query: 68  LMGRVADAAGIQFRVLNV------KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +   A AA     VL         +   V G R +  R L    +   +  + N  +  
Sbjct: 194 FLLAEAMAARGVETVLEAQSEEIVGRDGRVAGLRLKDGRVLPCDLLVMAVGIRPNATL-- 251

Query: 122 GEVAGFNTEKNIIS--SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK-----IPAGRM 174
            + +G    + ++   ++   D ++      V   G     V  I ++         GR 
Sbjct: 252 AKASGLEVGRGVVVDDALRTSDPAIYAVGECVEHRGQCYGLVAPIWEMCRTLADALTGRE 311

Query: 175 GDSPSNSLFNSFMKFDFDT 193
                  L         D 
Sbjct: 312 AAWEGAVLSTRLKVSGVDV 330


>gi|146303200|ref|YP_001190516.1| NADH:flavin oxidoreductase/NADH oxidase [Metallosphaera sedula DSM
           5348]
 gi|145701450|gb|ABP94592.1| NADH:flavin oxidoreductase/NADH oxidase [Metallosphaera sedula DSM
           5348]
          Length = 556

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG  G EA+ V AK G    L+                G    G L   +D    
Sbjct: 373 VTVVGGGLTGLEASRVLAKRGFKVTLLEQ--------------GDRLGGQLNWIMDPWKR 418

Query: 68  LMGRVADAAGIQFRVLNV-----KKGPAVRGPRTQADRE--LYRLAMQREILSQENLDVI 120
               + +    +   LNV      KG    G     DR    ++     EIL   NL   
Sbjct: 419 EFLSIVEYYEKELARLNVEIHLNTKGSRDEGLWAVPDRTQPQFKEINNTEILIDSNLYAY 478

Query: 121 QGEVAGFNTEKNIIS 135
           Q        E N ++
Sbjct: 479 QDYAFK-WAENNRVA 492


>gi|154250129|ref|YP_001410954.1| UDP-galactopyranose mutase [Fervidobacterium nodosum Rt17-B1]
 gi|154154065|gb|ABS61297.1| UDP-galactopyranose mutase [Fervidobacterium nodosum Rt17-B1]
          Length = 370

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          +D +V+G G AG  AA + A+ G    +I       G   
Sbjct: 3  FDAVVVGAGLAGSTAARILAESGRKVLVIEKHKHIAGHCH 42


>gi|114799977|ref|YP_760397.1| mercuric reductase [Hyphomonas neptunium ATCC 15444]
 gi|114740151|gb|ABI78276.1| mercuric reductase [Hyphomonas neptunium ATCC 15444]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 42/166 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREI 62
            YD+ VIG G AG  AA  AA+ G   ALI H T   T  ++ C P+             
Sbjct: 11  EYDLAVIGAGSAGFSAAITAAEGGVRVALIGHGTIGGTCVNVGCVPSKT----------- 59

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL--DVI 120
                 M R A+A    F   +  + P +RG    +D           I ++E+L   + 
Sbjct: 60  ------MIRAAEAV---FSAQSAHRFPGLRGEAQVSDWAA-------LIAAKEDLVASLR 103

Query: 121 QGEVAGFNTEKNIIS-----------SIVMQDNSMIRCSTVVLTTG 155
           Q + A      + ++             V      I+ S V++ TG
Sbjct: 104 QKKYANLLPGYHGVTYIDEGPARLVLGGVEVGGRKIKVSKVIVATG 149


>gi|111019133|ref|YP_702105.1| dihydrolipoamide dehydrogenase [Rhodococcus jostii RHA1]
 gi|110818663|gb|ABG93947.1| dihydrolipoyl dehydrogenanse [Rhodococcus jostii RHA1]
          Length = 466

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG STA+I  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAIIEQKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          HL  +     G+ G  +   G  +
Sbjct: 61 HLFTKEAKTFGISGEASFDFGAAY 84


>gi|11133019|sp|Q43415|LCYB_CAPAN RecName: Full=Lycopene beta cyclase, chloroplastic/chromoplastic;
           Flags: Precursor
 gi|999441|emb|CAA60119.1| lycopene synthase [Capsicum annuum]
          Length = 498

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 19/191 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-L 65
           D+ V+GGG AG   A   ++ G S   I      I   +    +       L+  +DA  
Sbjct: 83  DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATW 142

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G    + D      + LN   G   R       ++L    MQ+ IL+   +   Q +V 
Sbjct: 143 SGAAVYIDDKT---TKDLNRPYGRVNR-------KQLKSKMMQKCILN--GVKFHQAKVI 190

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
               E++  S ++  D   I+ + V+  TG F R ++   K   P           L   
Sbjct: 191 KVIHEESK-SMLICNDGITIQATVVLDATG-FSRSLVQYDK---PYNPGYQVAYGILAEV 245

Query: 186 FMKFDFDTGRL 196
             +  FD  ++
Sbjct: 246 -EEHPFDVNKM 255


>gi|332669448|ref|YP_004452456.1| geranylgeranyl reductase [Cellulomonas fimi ATCC 484]
 gi|332338486|gb|AEE45069.1| geranylgeranyl reductase [Cellulomonas fimi ATCC 484]
          Length = 431

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DVIV+G G AG  AA   A  G    L+  K S      C   +       LVR
Sbjct: 10 DVIVVGAGPAGSSAAFHCASAGLDVLLLE-KASFPRDKVCGDGLTPRAVAELVR 62


>gi|317488681|ref|ZP_07947221.1| hypothetical protein HMPREF1023_00919 [Eggerthella sp. 1_3_56FAA]
 gi|325831603|ref|ZP_08164820.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp.
          HGA1]
 gi|316912240|gb|EFV33809.1| hypothetical protein HMPREF1023_00919 [Eggerthella sp. 1_3_56FAA]
 gi|325486474|gb|EGC88923.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp.
          HGA1]
          Length = 302

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + YD++++G G AG  A   AA  G  T ++  K
Sbjct: 2  KEYDIVIVGAGPAGVSAGIYAASRGLETLILEQK 35


>gi|282864068|ref|ZP_06273125.1| FAD dependent oxidoreductase [Streptomyces sp. ACTE]
 gi|282561146|gb|EFB66691.1| FAD dependent oxidoreductase [Streptomyces sp. ACTE]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD +++GGGH G  AAA  A+ G S  ++     T G+     A  G     L R    +
Sbjct: 17  YDAVIVGGGHNGLVAAAYLARAGQSVLVLERLAGTGGAAVSAQAFDG-VDARLSRYSYLV 75

Query: 66  DGLMGRVADAAGIQFRVLNVKKG---PAVRGPR 95
             L  ++ D  G+ F V         PAVRG R
Sbjct: 76  SLLPQKIVDDLGLDFAVRKRSVSSYTPAVRGGR 108


>gi|254282176|ref|ZP_04957144.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR51-B]
 gi|219678379|gb|EED34728.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR51-B]
          Length = 534

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD I+IG GH G   A   A+ G  T ++
Sbjct: 7  NYDAIIIGAGHNGLTCAGYLARSGLKTLVL 36


>gi|212638802|ref|YP_002315322.1| dihydrolipoamide dehydrogenase [Anoxybacillus flavithermus WK1]
 gi|212560282|gb|ACJ33337.1| Branched-chain alpha-keto acid dehydrogenase E3 subunit
          (dihydrolipoamide dehydrogenase) [Anoxybacillus
          flavithermus WK1]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+ + YDV+++GGG  G  AA  AA+LG  TA++
Sbjct: 1  MMAKEYDVVILGGGTGGYVAAIRAAQLGLKTAVV 34


>gi|13899138|gb|AAG12404.1| Dld2 [Chlorobaculum tepidum]
          Length = 487

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV VIG G  G EAA  AA+ G  T ++
Sbjct: 28 QFDVAVIGSGPGGYEAAIHAARYGLKTCIV 57


>gi|21674121|ref|NP_662186.1| dihydrolipoamide dehydrogenase [Chlorobium tepidum TLS]
 gi|25452931|sp|Q8KCW2|DLDH_CHLTE RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of pyruvate and 2-oxoglutarate dehydrogenases
          complexes
 gi|21647278|gb|AAM72528.1| dihydrolipoamide dehydrogenase [Chlorobium tepidum TLS]
          Length = 469

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV VIG G  G EAA  AA+ G  T ++
Sbjct: 10 QFDVAVIGSGPGGYEAAIHAARYGLKTCIV 39


>gi|329571221|gb|EGG52918.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX1467]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|319653324|ref|ZP_08007425.1| succinate dehydrogenase [Bacillus sp. 2_A_57_CT2]
 gi|317394973|gb|EFV75710.1| succinate dehydrogenase [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHL 58
          ++ ++IVIGGG AG  AA   A+      L +          C     N A+   G+G  
Sbjct: 2  KNQEIIVIGGGLAGLMAAIKIAEAKTKVKLFSLVPVRRSHSVCAQGGINGAVNTKGEGDS 61

Query: 59 VRE 61
            E
Sbjct: 62 AWE 64


>gi|229156026|ref|ZP_04284126.1| phytoene dehydrogenase enzyme [Bacillus cereus ATCC 4342]
 gi|228627447|gb|EEK84174.1| phytoene dehydrogenase enzyme [Bacillus cereus ATCC 4342]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K++  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSNRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|229196660|ref|ZP_04323403.1| phytoene dehydrogenase enzyme [Bacillus cereus m1293]
 gi|228586735|gb|EEK44810.1| phytoene dehydrogenase enzyme [Bacillus cereus m1293]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K++  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSNRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|227553130|ref|ZP_03983179.1| thioredoxin reductase [Enterococcus faecalis HH22]
 gi|227177748|gb|EEI58720.1| thioredoxin reductase [Enterococcus faecalis HH22]
 gi|315575605|gb|EFU87796.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0309B]
 gi|315579953|gb|EFU92144.1| thioredoxin-disulfide reductase [Enterococcus faecalis TX0309A]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA  A++   S  +I
Sbjct: 2  YDVIIIGAGPAGMTAALYASRSNLSVLMI 30


>gi|224142353|ref|XP_002324523.1| predicted protein [Populus trichocarpa]
 gi|222865957|gb|EEF03088.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 31/185 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------------THKTSTIGSMSCNPAIGGL 53
           + V+G G +G  A+ V A+LGA   LI                    I  +  N   G  
Sbjct: 224 IAVVGSGPSGLFASLVLAELGADVTLIERGQPVEQRGRDIGALMVRRILELESNFCFGEG 283

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG-----PRTQADRELYRLAMQ 108
           G G        L   +GR +D+     + L V  G          P    DR +  L   
Sbjct: 284 GAG--TWSDGKLVTRIGRNSDSVLAVMKTL-VHFGAPENILIDGKPHLGTDRLVPLLRNF 340

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQ--------DNSMIRCSTVVLTTGTFLR 159
           R+ L  + + +  G  V     E   +  + +         D   +    V+L  G   R
Sbjct: 341 RQNLQDQGVSIKFGTRVDDLIIEDGHVVGVKVSDSKDKQKLDCQKLGFDAVILAVGHSAR 400

Query: 160 GVIHI 164
            + H+
Sbjct: 401 DIYHM 405


>gi|219851570|ref|YP_002466002.1| HI0933 family protein [Methanosphaerula palustris E1-9c]
 gi|219545829|gb|ACL16279.1| HI0933 family protein [Methanosphaerula palustris E1-9c]
          Length = 408

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-----VREI 62
          V+++GGG AG      AA +G    +         +      I G G+ +L     V E 
Sbjct: 4  VLIVGGGPAGLFCGLQAAGVGRRIVV----LEKKNACGRKLLITGTGQCNLTHGGAVSEF 59

Query: 63 DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT 96
              G  G     A + F  L++ +  A  G RT
Sbjct: 60 LPHYGDHGTFLRPALMNFNNLDLIRFFADHGVRT 93


>gi|94494355|gb|ABF29524.1| cytosolic glutathione reductase [Phaseolus vulgaris]
          Length = 506

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 11/163 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTSTIGSMSCNPAIGG-LGK 55
           +N  +D+ +IG G  G  AA  ++  GA   +      T  + TIG +     I G + K
Sbjct: 21  MNFDFDLFIIGAGSGGVRAARFSSNYGAKVGICELPFHTISSETIGGVGGTCVIRGCVPK 80

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
             LV          G + DA    + +         +  + + D       + + +LS  
Sbjct: 81  KILVYGASYGASYGGELEDARNYGWELSEKVDFNWKKLLQKKTDEINRLNGIYKRLLSNA 140

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
              + +GE  G     N +  +   D +        +++ TG+
Sbjct: 141 GAKLFEGE--GKIVGPNEVE-VTQLDGTKLSYSAKHILIATGS 180


>gi|156973541|ref|YP_001444448.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156525135|gb|ABU70221.1| hypothetical protein VIBHAR_01232 [Vibrio harveyi ATCC BAA-1116]
          Length = 391

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREI 62
             YD+ VIGGG  G   A   AK G S  ++          S    +      H  V+ +
Sbjct: 2   NKYDIAVIGGGMVGAAVAVGFAKQGRSVVVVEGTEPKAFEASQALDVRVSAISHQSVKLL 61

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR------------ELYRLAMQRE 110
           D+L       +      +R L   + P  R  R  +D              L +L + + 
Sbjct: 62  DSLGAWSAIESMRV-CPYRRLETWEHPECR-TRFHSDELSLEQLGYIVENRLIQLGLWQA 119

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               +NL V+  E    + E   ++ + ++       + V+   G   +
Sbjct: 120 FAQHDNLTVMCPERLK-DIEFAEVNRVTLESGEQFEANWVIGADGANSK 167


>gi|103488508|ref|YP_618069.1| succinate dehydrogenase flavoprotein subunit [Sphingopyxis
           alaskensis RB2256]
 gi|98978585|gb|ABF54736.1| succinate dehydrogenase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 604

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 76/225 (33%), Gaps = 56/225 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+  YD +V+G G +G  A   +A+ G  TA IT     ++ T+ +      ++G    
Sbjct: 7   IIDHIYDTVVVGAGGSGLRATMGSAEAGLKTACITKVFPTRSHTVAAQGGIAASLGNNSP 66

Query: 56  GH------------------------------LVREIDALDGLMGRVADAAGIQF----R 81
            H                               V E++       R AD    Q      
Sbjct: 67  DHWQWHMYDTVKGSDWLGDQDAIEYMVREAPAAVYELEHAGVPFSRNADGTIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-----DVIQGEVAGFNTEK----N 132
           + N+ +GP V+     ADR  +  AM   +  Q++L       I+        E      
Sbjct: 127 MQNMGEGPPVQRTCAAADRTGH--AMLHAL-YQQSLKYDADFFIEYFALDLIMENGANGP 183

Query: 133 IISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               ++   M+D S+   R   VVL TG + R            G
Sbjct: 184 ECRGVIALCMEDGSIHRFRSQAVVLATGGYGRCYFTATSAHTCTG 228


>gi|327537647|gb|EGF24359.1| phytoene dehydrogenase [Rhodopirellula baltica WH47]
          Length = 482

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV+VIG G AG  +A +  + G    L+   
Sbjct: 12 EYDVVVIGSGLAGMTSANILGRAGHRVLLLEQH 44


>gi|312963510|ref|ZP_07777992.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas fluorescens
           WH6]
 gi|311282316|gb|EFQ60915.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas fluorescens
           WH6]
          Length = 686

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA VAA+ G    L+  K
Sbjct: 393 VVVVGAGPAGMEAARVAAERGHDVTLLEKK 422


>gi|239609034|gb|EEQ86021.1| squalene epoxidase [Ajellomyces dermatitidis ER-3]
 gi|327354326|gb|EGE83183.1| squalene epoxidase [Ajellomyces dermatitidis ATCC 18188]
          Length = 484

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 15/172 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGK 55
           +   DV+++G G AGC  A    K G S  L+         I      P    A+  LG 
Sbjct: 31  HHEADVVIVGAGIAGCALAVTLGKQGRSVLLLERSLKEPDRIVGELLQPGGVRALEKLGL 90

Query: 56  GHLVREIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           GH + +IDA++     V      +       ++G   +G      R  + + ++      
Sbjct: 91  GHCLEDIDAIECHGMDVIYHGTEVPILYPKDEQGAPFKGRSFHHGR--FIMRLRESARVT 148

Query: 115 ENLDVIQGEVAGFNTE--KNIISSIV-MQDNSM--IRCSTVVLTTGTFLRGV 161
            N+ +++            N +  +    D            +  G   +  
Sbjct: 149 PNVTIVETTAVSVIHSSTDNEVLGVQCTTDGQKDYFFAPLTFIADGYASKFR 200


>gi|229593038|ref|YP_002875157.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
 gi|229364904|emb|CAY52986.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
          Length = 686

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA VAA+ G    L+  K
Sbjct: 393 VVVVGAGPAGMEAARVAAERGHDVTLLEKK 422


>gi|254510111|ref|ZP_05122178.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
 gi|221533822|gb|EEE36810.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
          Length = 462

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVIVIG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  SYDVIVIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAKMGLKGK 75


>gi|187477703|ref|YP_785727.1| dihydrolipoamide dehydrogenase [Bordetella avium 197N]
 gi|115422289|emb|CAJ48813.1| dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex) [Bordetella avium 197N]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGLSVACI 33


>gi|20385173|gb|AAM21202.1|AF367409_3 VioC [uncultured bacterium]
          Length = 429

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP---AIGGLGKGHLVREIDA 64
          +I++GGG AG  AA   A+ G    ++  +   +     N    +   +G    VR I A
Sbjct: 4  IIIVGGGLAGSLAAIYLARRGHDVHVVEKRADPLQEAPANADPVSSRAIGVSMTVRGIKA 63

Query: 65 L--DGLMGRVADAAG 77
          +   G+     D  G
Sbjct: 64 VLAAGISKEELDLCG 78


>gi|32471350|ref|NP_864343.1| phytoene dehydrogenase [Rhodopirellula baltica SH 1]
 gi|32443191|emb|CAD72022.1| probable phytoene dehydrogenase [Rhodopirellula baltica SH 1]
          Length = 504

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV+VIG G AG  +A +  + G    L+   
Sbjct: 34 EYDVVVIGSGLAGMTSANILGRAGHRVLLLEQH 66


>gi|145220943|ref|YP_001131621.1| amine oxidase [Mycobacterium gilvum PYR-GCK]
 gi|315442087|ref|YP_004074966.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
 gi|145213429|gb|ABP42833.1| amine oxidase [Mycobacterium gilvum PYR-GCK]
 gi|315260390|gb|ADT97131.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
          Length = 423

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 26/99 (26%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  YDV+VIG G AG   AA+ A  G S A+                  G   G  VR
Sbjct: 1  MSHGDYDVLVIGAGLAGLRCAALLASSGRSVAVWE---------------SGDAVGGRVR 45

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
            D +DG            F+VLN    PA    R   D
Sbjct: 46 T-DVVDGF------RCDRGFQVLN----PAYPELRRAID 73


>gi|84500199|ref|ZP_00998465.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Oceanicola batsensis
          HTCC2597]
 gi|84392133|gb|EAQ04401.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Oceanicola batsensis
          HTCC2597]
          Length = 462

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVRE 61
          YDVIVIG G  G  AA   A+LG  TA +  +  T+G    ++ C P+   L   H + E
Sbjct: 4  YDVIVIGSGPGGYVAAIRCAQLGLRTACVEGR-DTLGGTCLNIGCIPSKAMLHATHQLHE 62

Query: 62 ID---ALDGLMGRV------ADAAGIQFRVLNVKKG 88
           +   A  GL G+             Q  V +  KG
Sbjct: 63 AEHNFATMGLKGKSPSVDWKVMQEYRQSTVDSNTKG 98


>gi|320590094|gb|EFX02539.1| succinate flavoprotein subunit [Grosmannia clavigera kw1407]
          Length = 1624

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 76/252 (30%), Gaps = 55/252 (21%)

Query: 1    MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGL-- 53
            +I+  YD +V+G G +G  AA   A+ G +TA    L   ++ T+ +    N A+G +  
Sbjct: 1033 VIDHEYDALVVGAGGSGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAALGNMHE 1092

Query: 54   ----------GKGH-----------LVREIDAL-------------DGLMGRVADAAGIQ 79
                       KG            + RE  A                       A G Q
Sbjct: 1093 DDWRWHMYDTVKGSDWLGDQDAIHYMTREAPASIIELENYGCPFSRTDEGKIYQRAFGGQ 1152

Query: 80   FRVLNVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISS 136
             R  N  KG         ADR  + L      + +    N   I+        E      
Sbjct: 1153 SR--NFGKGGQAYRCCAAADRTGHALLHTLYGQSLAHNTN-FFIEFFAIDLIMEDGECRG 1209

Query: 137  IVMQDNS-----MIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF- 189
            ++  +           ++ VL TG + R            G  M       L N  ++F 
Sbjct: 1210 VLAYNQEDGTLHRFLANSTVLATGGYGRAYFSCTSAHTCTGDGMAMVARAGLPNQDLEFV 1269

Query: 190  -DFDTGRLKTGT 200
                TG    G 
Sbjct: 1270 QFHPTGIYGAGC 1281


>gi|301053966|ref|YP_003792177.1| putative phytoene dehydrogenase-like protein [Bacillus anthracis
          CI]
 gi|300376135|gb|ADK05039.1| possible phytoene dehydrogenase related enzyme [Bacillus cereus
          biovar anthracis str. CI]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|255528662|ref|ZP_05395415.1| thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
 gi|255507647|gb|EET84134.1| thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
          Length = 82

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YDVI+IG G AG  AA  +A+    T ++
Sbjct: 1  MNNIYDVIIIGSGPAGLSAAIYSARARLKTLIL 33


>gi|228915045|ref|ZP_04078645.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228844606|gb|EEM89657.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|228936823|ref|ZP_04099608.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228822836|gb|EEM68683.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|228985536|ref|ZP_04145691.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228774197|gb|EEM22608.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|229121996|ref|ZP_04251213.1| phytoene dehydrogenase enzyme [Bacillus cereus 95/8201]
 gi|228661463|gb|EEL17086.1| phytoene dehydrogenase enzyme [Bacillus cereus 95/8201]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|227115212|ref|ZP_03828868.1| putative flavoprotein subunit of a reductase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 39/209 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S D+++IG G AG  A   AA+ GA   L+  +    G+ +    I         R+
Sbjct: 32  IPKSADIVIIGAGAAGTSATMAAAEKGAKIVLLEKQPIVGGTGNFAEGIFAANSSLQKRQ 91

Query: 62  IDALDGLMGRVADAAGIQFRV--------LNVKKGPAVRGPRTQADRELY---------- 103
              +   M          +          +N          +++  +  Y          
Sbjct: 92  GIVVTPDMAFKTIMDYSHWMANPFVVRAFVNRSADTIEWV-KSKGIKFEYIGPGGPGGML 150

Query: 104 --------------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD----NSMI 145
                               +  S +   +++        +   ++ ++ QD       I
Sbjct: 151 TWHVIDGPGHGRHLIKTFHEQFKSMDVTTLVKTAGKDLVVKDGKVTGVIAQDSDGNTVQI 210

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               V++ TG +          K  A   
Sbjct: 211 DAKAVIIATGGYANNK--EMLQKYAAFPD 237


>gi|222096032|ref|YP_002530089.1| dehydrogenase [Bacillus cereus Q1]
 gi|229139139|ref|ZP_04267715.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST26]
 gi|221240090|gb|ACM12800.1| dehydrogenase [Bacillus cereus Q1]
 gi|228644329|gb|EEL00585.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST26]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|195151039|ref|XP_002016457.1| GL11586 [Drosophila persimilis]
 gi|194110304|gb|EDW32347.1| GL11586 [Drosophila persimilis]
          Length = 93

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 33 LITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
          ++TH   TIG MSCNP+ GG+GK H     ++     +GR   + G   R L+ +   A 
Sbjct: 1  MLTHNLETIGEMSCNPSFGGVGKSHAPAMWLECSTTDVGRGHRSIGSYARQLSRRNFLAG 60

Query: 92 RGPRTQ 97
          R  R +
Sbjct: 61 RTWRLK 66


>gi|194290222|ref|YP_002006129.1| succinate dehydrogenase flavoprotein subunit [Cupriavidus
          taiwanensis LMG 19424]
 gi|193224057|emb|CAQ70066.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Cupriavidus taiwanensis LMG 19424]
          Length = 592

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G + A+++
Sbjct: 11 RRFDVVIVGAGGAGMRASLQLAEAGLNVAVLS 42


>gi|196043406|ref|ZP_03110644.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225864412|ref|YP_002749790.1| hypothetical protein BCA_2517 [Bacillus cereus 03BB102]
 gi|196025715|gb|EDX64384.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225786002|gb|ACO26219.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|206973924|ref|ZP_03234842.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|206748080|gb|EDZ59469.1| conserved hypothetical protein [Bacillus cereus H3081.97]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|196033749|ref|ZP_03101160.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228927504|ref|ZP_04090558.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|195993429|gb|EDX57386.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228832161|gb|EEM77744.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|218903587|ref|YP_002451421.1| hypothetical protein BCAH820_2471 [Bacillus cereus AH820]
 gi|218536920|gb|ACK89318.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|217959946|ref|YP_002338502.1| hypothetical protein BCAH187_A2550 [Bacillus cereus AH187]
 gi|217064826|gb|ACJ79076.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|154317673|ref|XP_001558156.1| hypothetical protein BC1G_03188 [Botryotinia fuckeliana B05.10]
 gi|150844362|gb|EDN19555.1| hypothetical protein BC1G_03188 [Botryotinia fuckeliana B05.10]
          Length = 863

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           +N +YDVIV+GGG +G  AA   A+ G S  LI    +   ++     + 
Sbjct: 303 LNSTYDVIVVGGGASGIIAAERIAESGVSVLLIERGPANTVALGSTQGLS 352


>gi|150396675|ref|YP_001327142.1| soluble pyridine nucleotide transhydrogenase [Sinorhizobium
          medicae WSM419]
 gi|150028190|gb|ABR60307.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Sinorhizobium medicae WSM419]
          Length = 502

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
              YD+IV+G G AG   A  AAKLG    +I  
Sbjct: 35 FMNQYDLIVVGSGPAGRRGAIQAAKLGKKVLVIEQ 69


>gi|110679006|ref|YP_682013.1| sarcosine oxidase, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109455122|gb|ABG31327.1| sarcosine oxidase, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 1000

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           DV+++G G +G  AA  A + G++  L+   +   G++   P +   G+ 
Sbjct: 171 DVLIVGAGPSGIAAALTAGRAGSNVVLVDENSEMGGTLLSEPTVSIEGQS 220


>gi|49480828|ref|YP_036573.1| phytoene dehydrogenase related enzyme [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|49332384|gb|AAT63030.1| possible phytoene dehydrogenase related enzyme [Bacillus
          thuringiensis serovar konkukian str. 97-27]
          Length = 436

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|113868591|ref|YP_727080.1| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha
          H16]
 gi|33320236|gb|AAQ05854.1| SdhA protein [Cupriavidus necator]
 gi|113527367|emb|CAJ93712.1| succinate dehydrogenase (flavoprotein subunit) [Ralstonia
          eutropha H16]
          Length = 592

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G + A+++
Sbjct: 11 RRFDVVIVGAGGAGMRASLQLAEAGLNVAVLS 42


>gi|87307844|ref|ZP_01089987.1| putative secreted protein [Blastopirellula marina DSM 3645]
 gi|87289458|gb|EAQ81349.1| putative secreted protein [Blastopirellula marina DSM 3645]
          Length = 672

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          D++V+GG  +GC AA  AA++G    ++ + T+ +G    + A+G + +
Sbjct: 38 DLLVVGGAESGCAAAVQAARMGVKRIVLVNDTNWVGGQFSSEALGAIDE 86


>gi|302385888|ref|YP_003821710.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           saccharolyticum WM1]
 gi|302196516|gb|ADL04087.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium
           saccharolyticum WM1]
          Length = 662

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           N+   V+VIGGG AG EAA V A+ G    L        GS+  N   G +
Sbjct: 399 NKKKHVLVIGGGIAGMEAARVLAERGHCVTLC----EKSGSLGGNLIPGSV 445


>gi|260438991|ref|ZP_05792807.1| thioredoxin-disulfide reductase [Butyrivibrio crossotus DSM 2876]
 gi|292808642|gb|EFF67847.1| thioredoxin-disulfide reductase [Butyrivibrio crossotus DSM 2876]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + R YD ++IGGG AG  A+   A+ G    ++   
Sbjct: 3  MERLYDAVIIGGGPAGLTASLYLARAGYRVLVMEEN 38


>gi|226311271|ref|YP_002771165.1| succinate dehydrogenase flavoprotein subunit [Brevibacillus brevis
           NBRC 100599]
 gi|226094219|dbj|BAH42661.1| succinate dehydrogenase flavoprotein subunit [Brevibacillus brevis
           NBRC 100599]
          Length = 585

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 52/166 (31%), Gaps = 28/166 (16%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE-- 61
           I++GGG AG  A   AA+ G    L +          C     N A+   G+G    E  
Sbjct: 7   IIVGGGLAGLMATIKAAEKGVPVQLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSTWEHF 66

Query: 62  -IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLAM 107
                 G        +  + DAA     +L+       R P    D       + +R A 
Sbjct: 67  DDTVYGGDFLANQPPVKAMCDAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTKHHRTAF 126

Query: 108 QREILSQENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIR 146
                 Q+ L      V + E  G  T  E       V+ D    R
Sbjct: 127 AGATTGQQLLYALDEQVRRYEAEGLVTKYEYWDFLGAVLDDTGTCR 172


>gi|222106680|ref|YP_002547471.1| oxidoreductase [Agrobacterium vitis S4]
 gi|221737859|gb|ACM38755.1| oxidoreductase [Agrobacterium vitis S4]
          Length = 424

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +DV VIGGG  G  AA   AK GA   ++  +    G+   N      G  H    
Sbjct: 22  IEGDFDVAVIGGGFTGLAAARQLAKAGAKVIVLEGRRIGWGASGRNGGHLNNGLAHSYLG 81

Query: 62  IDALDG-----LMGRVADAAGIQFRVLNVKKG 88
             A  G      + +  D++      L  ++G
Sbjct: 82  AKAELGKERAIALYKALDSSIDTIEALIAEEG 113


>gi|154251761|ref|YP_001412585.1| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155711|gb|ABS62928.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Parvibaculum lavamentivorans DS-1]
          Length = 409

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL-------------ITHKTSTIGSMSCNPAIGGL 53
           DV+++GGG +G   A   A+ G S  +                + S I   SC       
Sbjct: 8   DVLIVGGGLSGLPLALACAQGGLSVTVIDALDPATVTDAAFDGRVSAIALASCRMLDSLG 67

Query: 54  GKGHLVREIDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
              HL  ++  ++ +M   GRV + A   F   + K+  A        +R + R+AMQ+ 
Sbjct: 68  VTAHLEGQMQPINDIMVSDGRVREGASPLFLHFDHKEIGAEPLGNLIENRHV-RIAMQKA 126

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           + ++  + +I       + E     +  + +   +         G
Sbjct: 127 VEAEPLIRLIAPRFVK-HVEYGARVTATLDNGEEVTARLCFAADG 170


>gi|88703460|ref|ZP_01101176.1| Dihydrolipoyl dehydrogenase [Congregibacter litoralis KT71]
 gi|88702174|gb|EAQ99277.1| Dihydrolipoyl dehydrogenase [Congregibacter litoralis KT71]
          Length = 478

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +   +DV+VIG G AG  AA  AA+LG STA++   T   G
Sbjct: 1  MADKFDVVVIGSGPAGYVAAIRAAQLGLSTAVVEEWTDDKG 41


>gi|292655551|ref|YP_003535448.1| P-hydroxybenzoate hydroxylase [Haloferax volcanii DS2]
 gi|291372616|gb|ADE04843.1| P-hydroxybenzoate hydroxylase [Haloferax volcanii DS2]
          Length = 471

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
           +S DV+V+G G +GC AAA  A  G    ++  K     G ++C  A+ G
Sbjct: 18 TQSVDVVVVGAGTSGCYAAATIANAGYDVTIVERKPEEEAGHIACGDALKG 68


>gi|258517346|ref|YP_003193568.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781051|gb|ACV64945.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 661

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 18/156 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG-----HLVREI 62
           VIV+G G AG EAA  AA LG    L+  +    G +     +    +      +L+ ++
Sbjct: 389 VIVVGAGPAGMEAAKTAALLGHEVILLEKEAEPGGQVRFAAKLPYRAEFGDVIRNLLNDL 448

Query: 63  DALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-DV 119
                   +G  ADA      +LN K    +    +   R            +QEN+  V
Sbjct: 449 KTSGVDLRLGSEADAEY----ILNEKPDCVIVATGSLPQRPPMPG------FNQENVFTV 498

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            Q           II    +  +     + ++   G
Sbjct: 499 WQLLTEDLVLGGRIIMVDQLGFHQASGAAELLADRG 534


>gi|227893190|ref|ZP_04010995.1| thioredoxin reductase [Lactobacillus ultunensis DSM 16047]
 gi|227865056|gb|EEJ72477.1| thioredoxin reductase [Lactobacillus ultunensis DSM 16047]
          Length = 309

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD IVIG G  G  AA  AA+   +  ++
Sbjct: 1  MANKYDAIVIGAGPGGMTAALYAARANLNVLVL 33


>gi|222151565|ref|YP_002560721.1| succinate dehydrogenase flavoprotein subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120690|dbj|BAH18025.1| succinate dehydrogenase flavoprotein subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 587

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 75/250 (30%), Gaps = 33/250 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID--- 63
           +VIV+GGG AG  A   AA+ G    L +          C    G  G  +   E D   
Sbjct: 5   NVIVVGGGLAGLMATIKAAESGTPVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGDSPY 63

Query: 64  ------ALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD----------R 100
                    G        +  + +AA     +L+       R P    D          R
Sbjct: 64  IHFDDTVYGGDFLANQPPVKAMTEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHR 123

Query: 101 ELYRLAMQ-REILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTF 157
             Y  A   +++L   +  V + EV G  T  E       V+ D    R       T + 
Sbjct: 124 TAYAGATTGQQLLYALDEQVRKFEVEGLVTKYEGWEFLGAVIDDEGAARGIIAQNLTTSE 183

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
           ++       +    G       +   NS +        +        +G+ I    T   
Sbjct: 184 IQSFKSDAVIMATGGPGIIFGKS--TNSMINTGSAASVVYQQGAIYANGEFIQIHPTAI- 240

Query: 218 FADERLIPFS 227
             D++L   S
Sbjct: 241 PGDDKLRLMS 250


>gi|170290758|ref|YP_001737574.1| geranylgeranyl reductase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174838|gb|ACB07891.1| geranylgeranyl reductase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 368

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D IVIG G +G   A + AK G  T ++  K       SC   +      +L+RE+   
Sbjct: 2   WDAIVIGAGPSGSVTAYLLAKKGYKTLILDMK-DFPRYKSCGGGVTWRA-YNLLREL--- 56

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+  R  +A      V+    G  ++    ++D E     + R  L +E LD  +    
Sbjct: 57  -GIKLRSPEAY--HKEVVIRGFGEEIKV---RSDEEFAVATLDRRKLDKELLD--EAIAQ 108

Query: 126 GFNTEKNIISSIVMQD------NSMIRCSTVVLTTGTF 157
           G    K  +S ++ ++       S      V+   G +
Sbjct: 109 GAEFRKEKVSGVISKEDRVEVIGSGFSSRYVIGADGAY 146


>gi|77919982|ref|YP_357797.1| flavoprotein-containing dehydrogenase [Pelobacter carbinolicus
          DSM 2380]
 gi|77546065|gb|ABA89627.1| flavoprotein-containing dehydrogenase [Pelobacter carbinolicus
          DSM 2380]
          Length = 414

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          +++DVI+ G G AG  AA   A +G    L
Sbjct: 26 QTWDVIIAGAGPAGSIAAITLADMGHRVLL 55


>gi|226943585|ref|YP_002798658.1| soluble pyridine nucleotide transhydrogenase [Azotobacter
          vinelandii DJ]
 gi|11135401|sp|Q9XBQ9|STHA_AZOVI RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|259511765|sp|C1DR10|STHA_AZOVD RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|5163507|gb|AAD40691.1|AF159108_1 soluble pyridine nucleotide transhydrogenase [Azotobacter
          vinelandii]
 gi|226718512|gb|ACO77683.1| soluble pyridine nucleotide transhydrogenase [Azotobacter
          vinelandii DJ]
          Length = 464

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+VIG G AG  AA  A K G   A++  +    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVIGTGPAGEGAAMNAVKAGRKVAVVDDRPQVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|330961975|gb|EGH62235.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+V+G G AG EAA V+A+ G    L   K   IG      +    
Sbjct: 393 VVVVGAGPAGLEAARVSAERGHDVTLFE-KKDFIGGQITTASKAPQ 437


>gi|73542009|ref|YP_296529.1| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha
          JMP134]
 gi|72119422|gb|AAZ61685.1| succinate dehydrogenase subunit A [Ralstonia eutropha JMP134]
          Length = 592

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G AG  A+   A+ G + A+++
Sbjct: 11 RRFDVVIVGAGGAGMRASLQLAEAGLNVAVLS 42


>gi|54026992|ref|YP_121234.1| putative oxidoreductase [Nocardia farcinica IFM 10152]
 gi|54018500|dbj|BAD59870.1| putative oxidoreductase [Nocardia farcinica IFM 10152]
          Length = 477

 Score = 43.0 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 28/158 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
            YDVIVIGGG AG E AA  A  G+       +   +G      +C P+   L  GH++ 
Sbjct: 9   EYDVIVIGGGPAG-ENAAAYAIAGSDRTAAIVERELVGGECSYWACMPSKALLRPGHVLA 67

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDV 119
              AL G+     D A     VL  +           Q D              Q  ++V
Sbjct: 68  AARALPGVRAEGLDVAA----VLRRRDAIVHDHDDSGQVDWAR-----------QNRIEV 112

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCS-TVVLTTGT 156
           I+G  AG    + ++      D    R    VVL TGT
Sbjct: 113 IRG--AGRLAGERLVE----VDGRRYRARHAVVLATGT 144


>gi|239997146|ref|ZP_04717670.1| probable alkyl hydroperoxide reductase subunit F [Alteromonas
           macleodii ATCC 27126]
          Length = 529

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 84/265 (31%), Gaps = 56/265 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AG  +A  +A+ G   A++                GG  K  +  E     
Sbjct: 217 DVTVIGGGPAGVASAIYSARKGLKVAIVA------------ETFGGQVKDTMGIE----- 259

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                            N+   P   GP    +   +       +     +D        
Sbjct: 260 -----------------NLISVPKTTGPELVGNLMEHVRDYDITLKEHVRVD-------- 294

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDSPSNS 181
            + EK  I +I +     IR  TV++ TG   R     G        +      D P   
Sbjct: 295 -SIEKGNIKTITLSSGEQIRTRTVIVATGARWRELGVPGEKENIGNGVAYCPHCDGPFFK 353

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECG 241
             +  +    ++G       A +     +++   +  AD+ LI  +   D IT       
Sbjct: 354 GKDVAVIGGGNSGIEAALDLAGIVKSVTVFEFMPELKADKVLIDQAQKRDNIT------- 406

Query: 242 ITRTNLETHRIIMENIKHSAIYSGD 266
               N  T +I  EN K +AI   D
Sbjct: 407 -IIKNAATRQITAENGKVNAIEYQD 430


>gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille]
 gi|151280459|gb|ABR88869.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++++DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKNFDVVVIGAGPGGYVAAIRAAQLGFTVACI 33


>gi|91772585|ref|YP_565277.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcoides
           burtonii DSM 6242]
 gi|91711600|gb|ABE51527.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A with
           C-terminal mvhD-like electron transfer domain
           [Methanococcoides burtonii DSM 6242]
          Length = 786

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           I  + DV+VIGGG AG EAA   A  G    ++
Sbjct: 137 IKANKDVLVIGGGVAGIEAALTLADSGTHVYMV 169


>gi|331014933|gb|EGH94989.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|330874656|gb|EGH08805.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|330872391|gb|EGH06540.1| NADH:flavin oxidoreductase/NADH oxidase family protein
          [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 330

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          V+V+G G AG EAA V+A+ G    L   K
Sbjct: 37 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 66


>gi|302132902|ref|ZP_07258892.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 682

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|298485228|ref|ZP_07003321.1| Probable FMN oxidoreductase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160216|gb|EFI01244.1| Probable FMN oxidoreductase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|289624277|ref|ZP_06457231.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646904|ref|ZP_06478247.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869849|gb|EGH04558.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|289424395|ref|ZP_06426178.1| thioredoxin-disulfide reductase [Propionibacterium acnes SK187]
 gi|289155092|gb|EFD03774.1| thioredoxin-disulfide reductase [Propionibacterium acnes SK187]
          Length = 350

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 41/171 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVI++G G AG  AA   A+ G    +        G++     +          E+
Sbjct: 41  DEPRDVIIVGSGPAGYTAAVYTARAGLKPLVFEGSMDAGGALMQTTEVENY---PGFSEV 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                LM ++                      R QA+R                 ++I  
Sbjct: 98  IMGPDLMAQM----------------------RAQAERF--------------GAELIAD 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +V   +     I  +V  D +  +   V+L  G+  R  + +      +GR
Sbjct: 122 DVTDIDLTG-EIKKLVDTDGNTYKAHVVILAMGSAYR-KLGLEDEPRLSGR 170


>gi|271962154|ref|YP_003336350.1| geranylgeranyl reductase [Streptosporangium roseum DSM 43021]
 gi|270505329|gb|ACZ83607.1| geranylgeranyl reductase [Streptosporangium roseum DSM 43021]
          Length = 425

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 24/147 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+G G AG   A   A+ G    L+  KT+      C   +       L+       
Sbjct: 17  DVIVVGAGPAGSTTAFHLAQAGLDVLLLE-KTTFPREKVCGDGLTPRAVKQLI------- 68

Query: 67  GLMGRVADAAG-IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE--NLDVIQGE 123
             MG   DA G ++ + L V  G    G R + D          E+ S     L   + +
Sbjct: 69  -AMGIDIDAPGWVRNKGLRVVGG----GLRFELD--------WPELSSYPDFGLVRTRQD 115

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTV 150
                    +   + +     +    +
Sbjct: 116 FDEILAANAVRGGVRLLQGVNVTAPIL 142


>gi|257482957|ref|ZP_05636998.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330989477|gb|EGH87580.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331011798|gb|EGH91854.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|254480770|ref|ZP_05094017.1| sarcosine oxidase, alpha subunit family [marine gamma
           proteobacterium HTCC2148]
 gi|214039353|gb|EEB80013.1| sarcosine oxidase, alpha subunit family [marine gamma
           proteobacterium HTCC2148]
          Length = 1004

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +N+  DV+V+G G AG  AA  AA+ GA   +
Sbjct: 164 LNQHCDVLVVGAGPAGLVAAREAARSGARVII 195


>gi|213967831|ref|ZP_03395978.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301382468|ref|ZP_07230886.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062100|ref|ZP_07253641.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213927607|gb|EEB61155.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|297203117|ref|ZP_06920514.1| tryptophan halogenase [Streptomyces sviceus ATCC 29083]
 gi|197717646|gb|EDY61680.1| tryptophan halogenase [Streptomyces sviceus ATCC 29083]
          Length = 491

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 14/148 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHL 58
           +N  YD+IV+GGG AG  AAA  A  G    L+   T     IG  S  PA      G L
Sbjct: 1   MNPEYDLIVVGGGPAGSTAAAAVALRGHRVLLLERETFPRYQIGE-SLLPATVHGLCGIL 59

Query: 59  --VREIDAL------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
               E+ A        G +    D    QF      + P       Q +R  +   + R 
Sbjct: 60  GVADEVAAAGFTLKRGGTLRWGRDPKPWQFSFAMTPRLPEPTATAFQVERSRFDEILLRN 119

Query: 111 ILSQENLDVIQGE-VAGFNTEKNIISSI 137
             ++   +V +G  V     +   +  +
Sbjct: 120 -AARVGAEVREGSPVRRIVADDERVRGV 146


>gi|28867626|ref|NP_790245.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850861|gb|AAO53940.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|71737075|ref|YP_276910.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557628|gb|AAZ36839.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320326341|gb|EFW82394.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331668|gb|EFW87606.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA V+A+ G    L   K
Sbjct: 393 VVVVGAGPAGMEAARVSAERGHDVTLFEKK 422


>gi|55821581|ref|YP_140023.1| hypothetical protein stu1605 [Streptococcus thermophilus LMG
          18311]
 gi|55823509|ref|YP_141950.1| hypothetical protein str1605 [Streptococcus thermophilus
          CNRZ1066]
 gi|116628295|ref|YP_820914.1| hypothetical protein STER_1567 [Streptococcus thermophilus LMD-9]
 gi|55737566|gb|AAV61208.1| conserved hypothetical protein [Streptococcus thermophilus LMG
          18311]
 gi|55739494|gb|AAV63135.1| conserved hypothetical protein [Streptococcus thermophilus
          CNRZ1066]
 gi|116101572|gb|ABJ66718.1| Predicted flavoprotein [Streptococcus thermophilus LMD-9]
 gi|312278919|gb|ADQ63576.1| Predicted flavoprotein [Streptococcus thermophilus ND03]
          Length = 393

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +D IVIGGG AG  A   +A  G  T LI   
Sbjct: 4  FDTIVIGGGPAGMMATIASAFYGQQTLLIEKN 35


>gi|293396153|ref|ZP_06640433.1| oxidoreductase [Serratia odorifera DSM 4582]
 gi|291421286|gb|EFE94535.1| oxidoreductase [Serratia odorifera DSM 4582]
          Length = 425

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 27/114 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG G  G  AA   A+ G    ++                    K           
Sbjct: 27  DVVVIGAGFTGISAALNLARSGLKVVVL-----------------EAAKVMSQASARN-G 68

Query: 67  GLMGRVADAAGIQFRVLNVKKG--PAVRGPRTQADRELYRLAMQREILSQENLD 118
           G            F  L   +G   A R  R  AD   Y      +++ QEN+D
Sbjct: 69  GHCNTGVAQ---DFASLVASRGMEQASRYYRAFADAVDYV----EQLVQQENID 115


>gi|222530052|ref|YP_002573934.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456899|gb|ACM61161.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 601

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 50/204 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVA------AKLGASTALIT------------HKTSTIG 42
           MI ++ DV+V+G G AG  AA  A      ++      L +              +  + 
Sbjct: 1   MIYKA-DVLVVGSGGAGLRAAIAACERAYESRKRIKVLLASKGKIGSCGTTALAYSDRMA 59

Query: 43  SMSCNPAIGGLGKGHLV---REIDALDGLMG------RVADAAGIQFRVLNVKKGP--AV 91
                P     G+ +     ++I  + GL+        +A  +   +  L+    P    
Sbjct: 60  FHVTLPTTEPKGEDNWKYHAKDIYEIGGLVSDYDLAEILAKNSADAYFYLDSLGVPFVKE 119

Query: 92  RGPRTQA--DRELYRLAMQ--------------REILSQENLDVIQG-EVAGFNTEKNII 134
            G   Q   D  +Y  A                R++   ++++V++   ++      N +
Sbjct: 120 NGVPAQFVTDGSIYARACFTGPDTAVQIEKALIRKLGEMKDIEVLEDVMISDLIVVNNKV 179

Query: 135 SSIVMQDN---SMIRCSTVVLTTG 155
              +        +I    +VL TG
Sbjct: 180 CGAIAFKGNQNIIILAKAIVLATG 203


>gi|189219014|ref|YP_001939655.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component or related enzyme
          [Methylacidiphilum infernorum V4]
 gi|189185872|gb|ACD83057.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component or related enzyme
          [Methylacidiphilum infernorum V4]
          Length = 461

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          D+IVIGGG AG  AA  AA+LG   ALI   
Sbjct: 5  DLIVIGGGPAGYVAALRAAQLGKKVALIEEN 35


>gi|90416008|ref|ZP_01223941.1| sarcosine oxidase, alpha subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332382|gb|EAS47579.1| sarcosine oxidase, alpha subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 1000

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +N+  DV+V+G G AG  AA  AA+ GA   +
Sbjct: 160 LNQHCDVLVVGAGPAGLVAAREAARTGARVII 191


>gi|257125332|ref|YP_003163446.1| dihydrolipoamide dehydrogenase [Leptotrichia buccalis C-1013-b]
 gi|257049271|gb|ACV38455.1| dihydrolipoamide dehydrogenase [Leptotrichia buccalis C-1013-b]
          Length = 563

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
              +D++VIGGG AG  AA  AA+LGA  A++
Sbjct: 104 EDEFDIVVIGGGPAGYVAAIRAAQLGAKVAVV 135


>gi|150396503|ref|YP_001326970.1| NADH:flavin oxidoreductase/NADH oxidase [Sinorhizobium medicae
           WSM419]
 gi|150028018|gb|ABR60135.1| NADH:flavin oxidoreductase/NADH oxidase [Sinorhizobium medicae
           WSM419]
          Length = 697

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 43/211 (20%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD-G 67
           ++IGGG AG EAA   A+ G    L                  G   G + RE       
Sbjct: 391 LIIGGGPAGLEAARALAQRGVDVVLAEGS--------------GEWGGRVARECRLPGLS 436

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
             GRV D    Q     V  G  +    + +D   Y +          ++ +  G     
Sbjct: 437 TWGRVRDWRIGQLST-RVNAGLYLHSRLSASDVLQYGI---------PHVAIATGA---- 482

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK--LKIPAG---RMGDSPSNSL 182
              +  I  +        R     L+ GT +     +      +PAG    + D     +
Sbjct: 483 ---RWRIDGV----GRTHRVPLEFLSQGTLVSPDTILSDGPQAVPAGGPVIVFDDDCFYM 535

Query: 183 FNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
            +   +     GR+ T      + +   W K
Sbjct: 536 GSVLAELLAKAGRMVTFITP--ESQVSPWSK 564


>gi|116696445|ref|YP_842021.1| dehydrogenase (flavoprotein) [Ralstonia eutropha H16]
 gi|113530944|emb|CAJ97291.1| Dehydrogenase (flavoprotein) [Ralstonia eutropha H16]
          Length = 409

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 38/178 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   + DV++IG G AG  AA +  K G    +I     T        +IG       + 
Sbjct: 1   MKTETTDVVIIGAGPAGSVAAGLLRKHGIPVLVIE--KETFPRF----SIGESLLPQSMA 54

Query: 61  EIDALDGLMGRVADAAGIQFRV-------------LNVKKGPAVRGPRTQADRELYRLAM 107
            I+     M R    AG Q++                 +K     G   Q  R  +   +
Sbjct: 55  YIEEAG--MLRAVVEAGFQYKNGAAFARGDQQTAFDFREKFSPGWGTTYQVQRARFDDVL 112

Query: 108 QREILSQENLDVIQGEVAGF--NTEKNIISS------IVMQDNSMI--RCSTVVLTTG 155
            RE          QG    F    E   +S       +   D S    R   ++  +G
Sbjct: 113 IRE-------AARQGAEVRFSHLVEDVDVSGAQPEVTVRAPDGSRYSVRAKFLLDASG 163


>gi|113868846|ref|YP_727335.1| hypothetical protein H16_A2891 [Ralstonia eutropha H16]
 gi|113527622|emb|CAJ93967.1| protoporphyrinogen oxidase [Ralstonia eutropha H16]
          Length = 434

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV+V+G G  G  AA   AK G    ++
Sbjct: 3  NYDVVVVGAGFTGLTAAYALAKQGKKVHVV 32


>gi|21911407|gb|AAM80530.1| StaK [Streptomyces toyocaensis]
          Length = 435

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 24/158 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS-------------M 44
           M   ++DV+V GGG AG  AA++ A  G    L+         +G              +
Sbjct: 1   MSAETFDVVVAGGGPAGSTAASLVAMQGHRVLLVEKEVLPRHRVGESLLPSTVHGVCRML 60

Query: 45  SCNPAIGGLGKGHLVREID-ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
                +       + R       G     A + G   R+ +     A +  R + D  L 
Sbjct: 61  GVTDELAET-DFPVKRGATFQWGGRAEPWAFSFGASSRLTDATS-FAYQADRARFDEILL 118

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQD 141
           + A ++ ++ +E        V     E + ++ +   D
Sbjct: 119 KNAKRKGVVVREGCS-----VTAVVEEGDRVTGLRHTD 151


>gi|50954961|ref|YP_062249.1| pyridine nucleotide-disulfide oxidoreductase [Leifsonia xyli
          subsp. xyli str. CTCB07]
 gi|50951443|gb|AAT89144.1| pyridine nucleotide-disulfide oxidoreductase [Leifsonia xyli
          subsp. xyli str. CTCB07]
          Length = 313

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M    ++VIV+GGG AG  AA   A+      ++   
Sbjct: 1  MTTAGFEVIVVGGGPAGLSAALNLARARRRVLVVDGN 37


>gi|317484053|ref|ZP_07942986.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
 gi|316924697|gb|EFV45850.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
          Length = 644

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+++GGG AG +AA VAA+ G    L 
Sbjct: 385 VVIVGGGPAGMQAALVAAERGHRVTLF 411


>gi|284993217|ref|YP_003411772.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Geodermatophilus obscurus DSM 43160]
 gi|284066463|gb|ADB77401.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Geodermatophilus obscurus DSM 43160]
          Length = 517

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  R YD +V+G GH G  AAA  A+ G S  ++
Sbjct: 1  MGARRYDAVVVGAGHNGLVAAAYLARAGWSVLVL 34


>gi|302543448|ref|ZP_07295790.1| putative monooxygenase, FAD-binding [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302461066|gb|EFL24159.1| putative monooxygenase, FAD-binding [Streptomyces himastatinicus
          ATCC 53653]
          Length = 440

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           RS DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 20 ERSADVIVVGAGPAGSTTAYHLAKSGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 75


>gi|255657068|ref|ZP_05402477.1| hypothetical protein CdifQCD-2_15546 [Clostridium difficile
           QCD-23m63]
 gi|296452100|ref|ZP_06893811.1| NADH oxidase [Clostridium difficile NAP08]
 gi|296877456|ref|ZP_06901489.1| NADH oxidase [Clostridium difficile NAP07]
 gi|296259050|gb|EFH05934.1| NADH oxidase [Clostridium difficile NAP08]
 gi|296431468|gb|EFH17282.1| NADH oxidase [Clostridium difficile NAP07]
          Length = 649

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +V+V+GGG AGCEAA   A+ G +  L+  +  
Sbjct: 513 EVVVLGGGLAGCEAAIHLAQEGKTVHLVEMRAE 545


>gi|317401810|gb|EFV82423.1| 2-oxoglutarate dehydrogenase complex [Achromobacter xylosoxidans
          C54]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACI 33


>gi|311104847|ref|YP_003977700.1| dihydrolipoyl dehydrogenase [Achromobacter xylosoxidans A8]
 gi|310759536|gb|ADP14985.1| dihydrolipoyl dehydrogenase 1 [Achromobacter xylosoxidans A8]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACI 33


>gi|293604117|ref|ZP_06686525.1| dihydrolipoyl dehydrogenase [Achromobacter piechaudii ATCC 43553]
 gi|292817342|gb|EFF76415.1| dihydrolipoyl dehydrogenase [Achromobacter piechaudii ATCC 43553]
          Length = 486

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 12 MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACI 44


>gi|259501059|ref|ZP_05743961.1| thioredoxin-disulfide reductase [Lactobacillus iners DSM 13335]
 gi|302190492|ref|ZP_07266746.1| thioredoxin reductase [Lactobacillus iners AB-1]
 gi|325911361|ref|ZP_08173773.1| thioredoxin-disulfide reductase [Lactobacillus iners UPII 143-D]
 gi|259167753|gb|EEW52248.1| thioredoxin-disulfide reductase [Lactobacillus iners DSM 13335]
 gi|325476711|gb|EGC79865.1| thioredoxin-disulfide reductase [Lactobacillus iners UPII 143-D]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus
           placidus DSM 10642]
 gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus
           placidus DSM 10642]
          Length = 777

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI 34
           +VIGGG AG EAA   A  G    LI
Sbjct: 144 VVIGGGVAGIEAALTLANAGVKVYLI 169


>gi|163856144|ref|YP_001630442.1| dihydrolipoamide dehydrogenase [Bordetella petrii DSM 12804]
 gi|163259872|emb|CAP42173.1| 2-oxoglutarate dehydrogenase complex, E3 component [Bordetella
          petrii]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACI 33


>gi|163739641|ref|ZP_02147050.1| FAD dependent oxidoreductase [Phaeobacter gallaeciensis BS107]
 gi|161387100|gb|EDQ11460.1| FAD dependent oxidoreductase [Phaeobacter gallaeciensis BS107]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++GGG+ G  AA   A+ G S  L+       G+   N   G LG G  + E D L+
Sbjct: 40  DVCIVGGGYTGLSAALHLAEAGRSVILLEANRVGFGASGRNG--GQLGSGQRM-EQDGLE 96

Query: 67  GLMGR 71
            LMG 
Sbjct: 97  SLMGE 101


>gi|152980938|ref|YP_001352178.1| hypothetical protein mma_0488 [Janthinobacterium sp. Marseille]
 gi|151281015|gb|ABR89425.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 398

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          + + +DV VIG G AG   A+VA + G S  L          ++    I G G+ +
Sbjct: 1  MTKQFDVAVIGAGAAGMMCASVAGQRGKSVVL----IDHAAKLAEKIRISGGGRCN 52


>gi|33592261|ref|NP_879905.1| dihydrolipoamide dehydrogenase [Bordetella pertussis Tohama I]
 gi|33602642|ref|NP_890202.1| dihydrolipoamide dehydrogenase [Bordetella bronchiseptica RB50]
 gi|33571906|emb|CAE41424.1| 2-oxoglutarate dehydrogenase complex, E3 component [Bordetella
          pertussis Tohama I]
 gi|33577084|emb|CAE35640.1| 2-oxoglutarate dehydrogenase complex, E3 component [Bordetella
          bronchiseptica RB50]
 gi|332381678|gb|AEE66525.1| dihydrolipoamide dehydrogenase [Bordetella pertussis CS]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACI 33


>gi|260887143|ref|ZP_05898406.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sputigena
           ATCC 35185]
 gi|330839087|ref|YP_004413667.1| HI0933 family protein [Selenomonas sputigena ATCC 35185]
 gi|260863205|gb|EEX77705.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas sputigena
           ATCC 35185]
 gi|329746851|gb|AEC00208.1| HI0933 family protein [Selenomonas sputigena ATCC 35185]
          Length = 420

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 135/440 (30%), Gaps = 76/440 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH---------L 58
           V+V+G G AG  AAA AA+ GAS  L       +  +     I G G+ +         +
Sbjct: 6   VLVVGAGPAGFMAAAKAAEAGASVLL----LEKMKQLGRKMMITGKGRCNITNVAPVAEI 61

Query: 59  VREIDALDGLMGRVADAAGIQ-----FRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           V+ I      +     A   +     FR L V+     RG R     +    A++  +  
Sbjct: 62  VKNIPGNGSFLYSALHAFDNEDVRDFFRELGVET-KVERGGRVFPVSDRAADAVEALVRH 120

Query: 114 QENLDVI---QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              L V    +  VA    E+   + +V+   + +R   VVL  G               
Sbjct: 121 LHELGVKIETEARVAEILVEEGHAAGVVLASGAKMRADAVVLAVGGASYPGTGSSGDGYA 180

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL---------DGKTI---IWDKTEKQF 218
             R        +  S +    +   +K      L         DG+ I     +     F
Sbjct: 181 MARALGHTITDVLPSLVPLVTEEDWVKEAQGLSLRNVRVTLLADGRRIGEEFGEMMFTHF 240

Query: 219 ADERLIPFSFMTDKIT----NRQIECGITRTNLETHRIIMENIKHS-AIYSGDIKSYGPR 273
                I  S            + +E  +      T  +    ++     Y       G R
Sbjct: 241 GVTGPIVLSLSRMAAQALAAGKFVELVLDLKPALTPEVFAARVQRDFEKYRNKALKNGMR 300

Query: 274 Y------CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327
                     + D      E+  H +  E                     I       + 
Sbjct: 301 DLLPGKLIAPVLDAAYLSPEKPVHDLRREE-----------------RMRISEVIKHLVL 343

Query: 328 GLEK----VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE------E 377
            +EK       I     +    I+PK    T+E+K + GL+LAG++    G+        
Sbjct: 344 TIEKTRPLAEAIVTAGGVSTKEIDPK----TMESKLVPGLYLAGEVVDVDGFTGGYNLQA 399

Query: 378 AAAQGLVAGINSARKSNKLD 397
           A + G  AG  SA ++ + +
Sbjct: 400 AFSMGAAAGRWSAARAGEAE 419


>gi|229526728|ref|ZP_04416132.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae bv. albensis VL426]
 gi|229336886|gb|EEO01904.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae bv. albensis VL426]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G +V
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSVV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DA   L  +  +    +    N +KG
Sbjct: 59 NQPFDAFSALQQQAPEHPYSKVGRKNSEKG 88


>gi|254463790|ref|ZP_05077201.1| hypothetical protein RBY4I_387 [Rhodobacterales bacterium Y4I]
 gi|206684698|gb|EDZ45180.1| hypothetical protein RBY4I_387 [Rhodobacterales bacterium Y4I]
          Length = 399

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +  ++D +VIG G AG  AA    + G    +I  K S
Sbjct: 1  MTETWDAVVIGAGPAGLMAAEELGRAGHRVLVIEAKPS 38


>gi|153800717|ref|ZP_01955303.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae MZO-3]
 gi|124123692|gb|EAY42435.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae MZO-3]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G +V
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSVV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DA   L  +  +    +    N +KG
Sbjct: 59 NQPFDAFSALQQQAPEHPYSKVGRKNSEKG 88


>gi|254226181|ref|ZP_04919776.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae V51]
 gi|125621283|gb|EAZ49622.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae V51]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G +V
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQGQSALHFSSGSIDVLGRLPDGSVV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DA   L  +  +    +    N +KG
Sbjct: 59 NQPFDAFSALQQQAPEHPYSKVGRKNSEKG 88


>gi|330891367|gb|EGH24028.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 637

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA  +A+ G    L   K
Sbjct: 344 VVVVGAGPAGMEAARGSAERGHDVTLFEKK 373


>gi|329935999|ref|ZP_08285799.1| electron transfer oxidoreductase [Streptomyces griseoaurantiacus
          M045]
 gi|329304477|gb|EGG48355.1| electron transfer oxidoreductase [Streptomyces griseoaurantiacus
          M045]
          Length = 429

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   + DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 7  LTEHTADVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 64


>gi|325967938|ref|YP_004244130.1| chemotaxis sensory transducer [Vulcanisaeta moutnovskia 768-28]
 gi|323707141|gb|ADY00628.1| chemotaxis sensory transducer [Vulcanisaeta moutnovskia 768-28]
          Length = 486

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK- 496
           R D  + RL     +L    +  ++R  +  Q    L+ L K L      L+      K 
Sbjct: 287 RIDAENARL----RELEKKEQEVKERLEQLSQREAELKELEKKLNERQNALNKLEAELKD 342

Query: 497 QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI 556
           ++ +  +    L   +     L S+  +  K       R +I         + + E K +
Sbjct: 343 KESRLNSLENLLKERE---NALKSLDDEINK------RRKEIMEKLEPLMTKLIEEEKRL 393

Query: 557 KFEEKRLIPKD---FDYSSLPALS----NELKEKLSILK 588
              EKRL+ K+    +Y     +      EL+EKL   K
Sbjct: 394 TDWEKRLLDKERELMNYQRALIIRENTLVELREKLDREK 432


>gi|239939432|ref|ZP_04691369.1| putative FAD-dependent oxidoreductase [Streptomyces roseosporus
          NRRL 15998]
 gi|239985919|ref|ZP_04706583.1| putative FAD-dependent oxidoreductase [Streptomyces roseosporus
          NRRL 11379]
 gi|291442865|ref|ZP_06582255.1| geranylgeranyl reductase [Streptomyces roseosporus NRRL 15998]
 gi|291345812|gb|EFE72716.1| geranylgeranyl reductase [Streptomyces roseosporus NRRL 15998]
          Length = 455

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          VIV+G G AG  AA   A+ G    L+  K        C   +       L+R
Sbjct: 22 VIVVGAGPAGSSAAYHLARAGVDVILLE-KARFPREKVCGDGLTPRAVHQLIR 73


>gi|229103055|ref|ZP_04233743.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-28]
 gi|228680339|gb|EEL34528.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-28]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|126650644|ref|ZP_01722867.1| thioredoxin reductase [Bacillus sp. B14905]
 gi|126592800|gb|EAZ86799.1| thioredoxin reductase [Bacillus sp. B14905]
          Length = 348

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          M    YDVI+IGGG AG  AA  +      T +I  K    G M   P
Sbjct: 1  MQQEIYDVIIIGGGPAGMYAAFYSGMREMKTKIIEVKHELGGFMRTYP 48


>gi|76664919|emb|CAJ17897.1| fatty acid/phospholipid biosynthesis enzyme [Candidatus
          Phytoplasma solani]
          Length = 122

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIG-SMSCNPA 49
          ++YD++VIGGG  G  AA  AA+LGA  A++  HK   I  +  C P 
Sbjct: 2  KNYDILVIGGGPGGYVAAIKAAQLGAKVAIVEKHKLGGICLNYGCIPT 49


>gi|332881163|ref|ZP_08448823.1| amine oxidase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680912|gb|EGJ53849.1| amine oxidase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 505

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + +YDVIVIG G +G  +A + A+ G    ++   
Sbjct: 7  DETYDVIVIGSGLSGLFSALLLARAGKKVCVLEKN 41


>gi|322385523|ref|ZP_08059167.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           cristatus ATCC 51100]
 gi|321270261|gb|EFX53177.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           cristatus ATCC 51100]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|153939680|ref|YP_001390609.1| thioredoxin-disulfide reductase [Clostridium botulinum F str.
          Langeland]
 gi|152935576|gb|ABS41074.1| thioredoxin-disulfide reductase [Clostridium botulinum F str.
          Langeland]
 gi|295318686|gb|ADF99063.1| thioredoxin-disulfide reductase [Clostridium botulinum F str.
          230613]
          Length = 313

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDVI+IG G AG  A   AA+    T ++    +  G +     +           
Sbjct: 1  MENLYDVIIIGSGPAGLSAGLYAARARLKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    D  G + +  NVK+
Sbjct: 60 GASLVARMEEQVDEFGAERKKDNVKE 85


>gi|149193834|ref|ZP_01870932.1| fumarate reductase flavoprotein subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135787|gb|EDM24265.1| fumarate reductase flavoprotein subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 520

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 40/195 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI-----THKTSTIGSMSCNPAIGGLGKGHLV 59
           SYD++V+G G AG  AA  A +LG++ A++         S +     N A+  +G G  +
Sbjct: 2   SYDILVVGSGIAGMMAAIEAKELGSNVAIVMKKSPLANNSFMAKGGINAALNNMGDGDSI 61

Query: 60  RE--IDALDGLMGRVADAAGIQF--------RVLNVK-KGPAVRGPR----------TQA 98
            +   D L G MG   + A   F        R L+ K K P    P           T+ 
Sbjct: 62  EQHIQDTLKGGMGIAEEEAVRIFCEHAPQVVRELHRKYKVPFTTLPDGRLAQRPFGGTKF 121

Query: 99  DRELYR---------LAMQREILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSM 144
            R  Y            + + I       +             +I+ +        +  +
Sbjct: 122 KRTCYSADATGPAIMKTLNKVIQELNIPTIKNHFALNLLVNNGVIAGVSFLDEETNEVKV 181

Query: 145 IRCSTVVLTTGTFLR 159
           I+   V++ TG +  
Sbjct: 182 IKAKAVIMATGGYAG 196


>gi|116694364|ref|YP_728575.1| choline dehydrogenase/alkyl sulfatase [Ralstonia eutropha H16]
 gi|113528863|emb|CAJ95210.1| two domain protein: Choline dehydrogenase and alkyl sulfatase
          [Ralstonia eutropha H16]
          Length = 1241

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 2  INRSYDVIVIGGGHAGCEAA--AVAAKLGASTALITHKTST-------IGSMSCNPAIGG 52
          +  +YD IVIG G AGC  A     A+ G    L              IG  S  P  G 
Sbjct: 1  MQTTYDYIVIGAGSAGCAVAGRLADARAGTVAVLEAGGHDCRPAITVPIGFASTVPKPGP 60

Query: 53 LGKGHLVREIDALDG 67
             G       AL G
Sbjct: 61 FNYGFTTEPQRALGG 75


>gi|219666809|ref|YP_002457244.1| succinate dehydrogenase flavoprotein subunit [Desulfitobacterium
          hafniense DCB-2]
 gi|219537069|gb|ACL18808.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Desulfitobacterium hafniense DCB-2]
          Length = 578

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG  AA   A+ G    L +          C    G  G  +   E D
Sbjct: 4  VIVVGGGLAGLMAAIKIAEEGTPVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 58


>gi|315122214|ref|YP_004062703.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495616|gb|ADR52215.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 481

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++SY+VIVIG G AG   A  AA+LG   A++
Sbjct: 1  MSKSYEVIVIGSGPAGYVCAIRAAQLGFKVAIV 33


>gi|167465088|ref|ZP_02330177.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus
          larvae subsp. larvae BRL-230010]
 gi|322384571|ref|ZP_08058251.1| succinate dehydrogenase flavoprotein subunit-like protein
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150626|gb|EFX44103.1| succinate dehydrogenase flavoprotein subunit-like protein
          [Paenibacillus larvae subsp. larvae B-3650]
          Length = 586

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG  A   AA+ G    L +          C    G  G  +   E D
Sbjct: 6  VIVVGGGLAGLMATIKAAEAGIHVQLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|118469367|ref|YP_889900.1| phytoene dehydrogenase [Mycobacterium smegmatis str. MC2 155]
 gi|118170654|gb|ABK71550.1| phytoene dehydrogenase [Mycobacterium smegmatis str. MC2 155]
          Length = 519

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M    +D +++GGGH G  AAA  A+ G    ++  +   +G
Sbjct: 1  MTEPQFDAVIVGGGHNGLVAAAYLARAGRRVRVLE-RLDHVG 41


>gi|78212771|ref|YP_381550.1| geranylgeranyl reductase [Synechococcus sp. CC9605]
 gi|78197230|gb|ABB34995.1| geranylgeranyl reductase [Synechococcus sp. CC9605]
          Length = 455

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  D 
Sbjct: 4   VAVIGGGPSGSCAAEILAKAGIETWLFERKLD--NAKPC----GGAIPLCMVEEFDLPD- 56

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILS 113
               + D      ++++       ++      D   Y    +RE+  
Sbjct: 57  ---EIIDRKVRNMKMISPSNREVDIKLDPLGYDENAYIGMCRREVFD 100


>gi|323356477|ref|YP_004222873.1| phytoene dehydrogenase [Microbacterium testaceum StLB037]
 gi|323272848|dbj|BAJ72993.1| phytoene dehydrogenase [Microbacterium testaceum StLB037]
          Length = 411

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIV+G G AG   A   A+ G    ++
Sbjct: 3  EYDVIVVGAGLAGLRCATRLAEAGRDVVVL 32


>gi|262275852|ref|ZP_06053661.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Grimontia
          hollisae CIP 101886]
 gi|262219660|gb|EEY70976.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Grimontia
          hollisae CIP 101886]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++D IVIGGG AG  AA  +A+ G  TALI+ 
Sbjct: 3  TFDTIVIGGGLAGYCAAIKSAQQGRKTALISQ 34


>gi|260426921|ref|ZP_05780900.1| dihydrolipoyl dehydrogenase [Citreicella sp. SE45]
 gi|260421413|gb|EEX14664.1| dihydrolipoyl dehydrogenase [Citreicella sp. SE45]
          Length = 464

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M ++S+D+IVIG G  G  AA   A+LG   A +      +G +     C P    L   
Sbjct: 1   MASQSFDMIVIGAGPGGYVAAIRGAQLGLKVACVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   +        +          V+   +G A      Q +  +  L  + ++ S   
Sbjct: 59  EIFHYMHRAKEYGLKAEGIGFDLDAVVKRSRGVAK-----QLNSGVTHLLKKNKVTS--- 110

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
              I GE     T K  +S +     +  +    +V+ TG   R +
Sbjct: 111 ---IMGEAT--ITAKGKVS-VKTDKGTEELTAKNIVVATGARAREL 150


>gi|206890893|ref|YP_002249538.1| glucose inhibited division protein A [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742831|gb|ACI21888.1| glucose inhibited division protein A [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 312

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVI+IGGG AG  A   A++    T ++
Sbjct: 1  MSEFYDVIIIGGGPAGLTAGIYASRANLKTLIL 33


>gi|170755998|ref|YP_001780883.1| thioredoxin-disulfide reductase [Clostridium botulinum B1 str.
          Okra]
 gi|169121210|gb|ACA45046.1| thioredoxin-disulfide reductase [Clostridium botulinum B1 str.
          Okra]
          Length = 313

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDVI+IG G AG  A   AA+    T ++    +  G +     +           
Sbjct: 1  MENLYDVIIIGSGPAGLSAGLYAARARLKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    D  G + +  NVK+
Sbjct: 60 GASLVARMEEQVDEFGAERKKDNVKE 85


>gi|148989191|ref|ZP_01820581.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925414|gb|EDK76492.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP6-BS73]
          Length = 568

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|84499647|ref|ZP_00997935.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Oceanicola batsensis
           HTCC2597]
 gi|84392791|gb|EAQ05002.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Oceanicola batsensis
           HTCC2597]
          Length = 402

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +   +D+++ GGG AG  AAAV    G S  L             G+     A     +G
Sbjct: 1   MTTDHDIVISGGGVAGLTAAAVFGTAGHSVLLCDPAPPVTEGEAEGADLRTTAFLQPARG 60

Query: 57  HLVR-------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
            L            A    + R+ DA G        +   A           L    ++R
Sbjct: 61  LLEDAGLWSRLADHAAPLRVMRIVDAGGPPPEPRVTRDFDAADISSGPFGWNLPNWLLRR 120

Query: 110 E----ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           E    +    N+D   G        +   + + + D S +RC  V+   G
Sbjct: 121 EMLGRLDDLPNVDFRPGTGTETLLTREREARVGLSDGSRVRCRLVIAADG 170


>gi|117925728|ref|YP_866345.1| hypothetical protein Mmc1_2439 [Magnetococcus sp. MC-1]
 gi|117609484|gb|ABK44939.1| HI0933 family protein [Magnetococcus sp. MC-1]
          Length = 397

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 18/151 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+ VIG G AG   A  AA+ G    +                I G G+ +      + 
Sbjct: 11  YDLSVIGAGAAGLVCAIEAARRGLRVVV----LDHARQAGEKIRISGGGRCNFTNLSLSP 66

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D  +             L+  KG +      + D    R   +            QG   
Sbjct: 67  DNYISHNPKFC------LSALKGYSPYDFMARLDLHHIRYEEKEAGQ-----LFCQGSAK 115

Query: 126 GF---NTEKNIISSIVMQDNSMIRCSTVVLT 153
                  ++   + +V++    +  +  +  
Sbjct: 116 EIVAMLLQEATTAGVVLKMGHTVHTARALGD 146


>gi|331703869|ref|YP_004400556.1| thioredoxin reductase (NADPH) [Mycoplasma mycoides subsp. capri
          LC str. 95010]
 gi|328802424|emb|CBW54579.1| Thioredoxin reductase (NADPH) [Mycoplasma mycoides subsp. capri
          LC str. 95010]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + N  YDVI++G G AG  +A   A+ G  T +    
Sbjct: 4  LTNEIYDVIIVGSGPAGLTSAIYTARAGLKTVIYEQS 40


>gi|317149244|ref|XP_003190291.1| cellobiose dehydrogenase [Aspergillus oryzae RIB40]
          Length = 884

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------THKTSTIGSMSCNPAIGGLG 54
           ++N +YD IV+GGG AG   A   A+      L+      T +     ++S N ++    
Sbjct: 237 VLNSTYDYIVVGGGPAGIITAERLAETKKKVLLLERGVAPTVQMGNKNALSWNNSLTPHD 296

Query: 55  KGHLVREIDALDGLMGRVADAAGIQ 79
              L   +  L  L   + D     
Sbjct: 297 VPALGSSLSKLGLLDDYLCDDTAGM 321


>gi|313638462|gb|EFS03644.1| dihydrolipoyl dehydrogenase [Listeria seeligeri FSL S4-171]
          Length = 372

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITVGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E +  D  MG  AD   + F      KG  V
Sbjct: 64 RFKEANHSDN-MGITADNVSLDFTKAQEWKGSVV 96


>gi|313665665|ref|YP_004047536.1| thioredoxin-disulfide reductase [Mycoplasma leachii PG50]
 gi|312949505|gb|ADR24101.1| thioredoxin-disulfide reductase [Mycoplasma leachii PG50]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + N  YDVI++G G AG  +A   A+ G  T +    
Sbjct: 4  LTNEIYDVIIVGSGPAGLTSAIYTARAGLKTVIYEQS 40


>gi|309776087|ref|ZP_07671078.1| NADH oxidase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916038|gb|EFP61787.1| NADH oxidase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 648

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +V+VIGGG AG EAA VA + G    L       +G +    ++  + K  L R I  +
Sbjct: 382 NVLVIGGGPAGMEAAFVAKQRGHHVVLCEQS-DMLGGLMKIASV-PIAKQDLARVIKYM 438


>gi|183985351|ref|YP_001853642.1| dehydrogenase [Mycobacterium marinum M]
 gi|183178677|gb|ACC43787.1| dehydrogenase [Mycobacterium marinum M]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           YD IVIG GH G  AA +  + G  T  +  K    G  S      G
Sbjct: 3  EYDAIVIGAGHNGLTAAVLLQRAGLRTLCLDAKLYAGGMASTVELFDG 50


>gi|167461963|ref|ZP_02327052.1| hypothetical protein Plarl_05305 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 622

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSM 44
          +  +YDVIV+G    G  AA  +A+ G  T L+       +G +
Sbjct: 32 LQDNYDVIVVGTDPEGISAALSSARNGLKTLLVDGRNRDRLGGL 75


>gi|146305532|ref|YP_001185997.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas mendocina ymp]
 gi|145573733|gb|ABP83265.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas mendocina ymp]
          Length = 686

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+++GGG AG EAA VAA+ G    L   K   +G      +    
Sbjct: 393 VVIVGGGPAGMEAARVAAERGHDVTLFE-KKDALGGQITTASKAPQ 437


>gi|116070686|ref|ZP_01467955.1| Geranylgeranyl reductase [Synechococcus sp. BL107]
 gi|116066091|gb|EAU71848.1| Geranylgeranyl reductase [Synechococcus sp. BL107]
          Length = 452

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E +  D 
Sbjct: 4   VAVIGGGPSGSCAAEILAKAGIETWLFERKLD--NAKPC----GGAIPLCMVEEFNLPDS 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILS 113
               + D      ++++       ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNREVDIQLDPLGYDENAYIGMCRREVFD 100


>gi|169612627|ref|XP_001799731.1| hypothetical protein SNOG_09438 [Phaeosphaeria nodorum SN15]
 gi|111062510|gb|EAT83630.1| hypothetical protein SNOG_09438 [Phaeosphaeria nodorum SN15]
          Length = 498

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YDVIVIG G+ G  AA  AA  G    L+  +   IG  S +  IGG
Sbjct: 38 YDVIVIGAGYCGLTAARNAAIAGLKVLLLEGR-DRIGGRSWSSNIGG 83


>gi|42561454|ref|NP_975905.1| thioredoxin reductase (NADPH) [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|42492953|emb|CAE77547.1| thioredoxin reductase (NADPH) [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|301321432|gb|ADK70075.1| thioredoxin-disulfide reductase [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + N  YDVI++G G AG  +A   A+ G  T +    
Sbjct: 4  LTNEIYDVIIVGSGPAGLTSAIYTARAGLKTVIYEQS 40


>gi|309809405|ref|ZP_07703267.1| thioredoxin-disulfide reductase [Lactobacillus iners SPIN
           2503V10-D]
 gi|312870795|ref|ZP_07730901.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 3008A-a]
 gi|312873097|ref|ZP_07733156.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2062A-h1]
 gi|312875090|ref|ZP_07735107.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2053A-b]
 gi|325913341|ref|ZP_08175709.1| thioredoxin-disulfide reductase [Lactobacillus iners UPII 60-B]
 gi|308170316|gb|EFO72347.1| thioredoxin-disulfide reductase [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089380|gb|EFQ47807.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2053A-b]
 gi|311091330|gb|EFQ49715.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093671|gb|EFQ52009.1| thioredoxin-disulfide reductase [Lactobacillus iners LEAF 3008A-a]
 gi|325477444|gb|EGC80588.1| thioredoxin-disulfide reductase [Lactobacillus iners UPII 60-B]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|306821009|ref|ZP_07454628.1| thioredoxin-disulfide reductase [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304550950|gb|EFM38922.1| thioredoxin-disulfide reductase [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 311

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVI+IGGG AG  AA  A++   ST +I
Sbjct: 2  ENYDVIIIGGGPAGLTAAIYASRARLSTLII 32


>gi|301800100|emb|CBW32701.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae OXC141]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|262164897|ref|ZP_06032635.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          mimicus VM223]
 gi|262027277|gb|EEY45944.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          mimicus VM223]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGTKVVLINQ 34


>gi|260890275|ref|ZP_05901538.1| dihydrolipoyl dehydrogenase [Leptotrichia hofstadii F0254]
 gi|260859895|gb|EEX74395.1| dihydrolipoyl dehydrogenase [Leptotrichia hofstadii F0254]
          Length = 576

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
              +D++VIGGG AG  AA  AA+LGA  A++
Sbjct: 117 EDEFDIVVIGGGPAGYVAAIRAAQLGAKVAVV 148


>gi|254467004|ref|ZP_05080415.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhodobacterales bacterium Y4I]
 gi|206687912|gb|EDZ48394.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Rhodobacterales bacterium Y4I]
          Length = 408

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 32/213 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIG-----------SMSCNPA 49
           +  + D++++GGG  G   A   A+ G S  ++ +     +            +++    
Sbjct: 1   MKNASDILIVGGGLNGPALALALAQTGHSVTVVDSLTPDKLADDGFDGRGYALALASQRL 60

Query: 50  IGGLGKGHLVR-------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
           +   G    V        EI   DG  G       I F    +++GP         DR L
Sbjct: 61  LQQTGVWQHVGDNAQPMLEIKVTDGHAGHGPSPFFIHFDHAELEEGPMGYMVE---DRFL 117

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT----TGTFL 158
            R A  + +  Q  + ++ G             ++ + D   +R   +V +    +GT  
Sbjct: 118 -RRAFLQAMEDQPQITLVSGRTVTAQAPDQTGVTVTLDDGGELRGQILVGSDGRRSGTAQ 176

Query: 159 RGVIHIGKLKIP-----AGRMGDSPSNSLFNSF 186
           R  I                  + P + + + F
Sbjct: 177 RAGIKRTGWDYGQTALVCAIDHEKPHHGIAHQF 209


>gi|119491903|ref|XP_001263446.1| fructosyl amino acid oxidasesarcosine oxidase, putative
           [Neosartorya fischeri NRRL 181]
 gi|119411606|gb|EAW21549.1| fructosyl amino acid oxidasesarcosine oxidase, putative
           [Neosartorya fischeri NRRL 181]
          Length = 440

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN-------TEKNI 133
           + LNV  G    G    AD        ++ +  Q  +    GEV           T +  
Sbjct: 139 KELNVAGGYINWGS-GWADAAAGVRFAKKLLDEQGKVVFKTGEVDRLLLADSQSATSQRR 197

Query: 134 ISSIVMQDNSMIRCSTVVLTTGT------FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
           ++ +V+ D + +    VVL TG        LRG        +    + D     L N   
Sbjct: 198 VTGVVLTDGTTLTADLVVLATGAWTGKLVDLRGRAISTGQALAYMHISDKEQRRLENIPT 257

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +F  G      P R +   I       Q      IP
Sbjct: 258 VLNFANGIFII--PPRNNLLKIARHAYGYQNPKAVPIP 293


>gi|116072329|ref|ZP_01469596.1| dihydrolipoamide dehydrogenase [Synechococcus sp. BL107]
 gi|116064851|gb|EAU70610.1| dihydrolipoamide dehydrogenase [Synechococcus sp. BL107]
          Length = 480

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA  G  TA+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAADHGLKTAIIE-SRDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 I 62
          +
Sbjct: 66 L 66


>gi|78184812|ref|YP_377247.1| geranylgeranyl reductase [Synechococcus sp. CC9902]
 gi|78169106|gb|ABB26203.1| Geranylgeranyl reductase [Synechococcus sp. CC9902]
          Length = 452

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E +  D 
Sbjct: 4   VAVIGGGPSGSCAAEILAKAGIETWLFERKLD--NAKPC----GGAIPLCMVEEFNLPDS 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILS 113
               + D      ++++       ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNREVDIQLDPLGYDENAYIGMCRREVFD 100


>gi|78185097|ref|YP_377532.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CC9902]
 gi|78169391|gb|ABB26488.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CC9902]
          Length = 480

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA  G  TA+I       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAADHGLKTAIIE-SRDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 I 62
          +
Sbjct: 66 L 66


>gi|327283929|ref|XP_003226692.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Anolis carolinensis]
          Length = 1414

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 16/155 (10%)

Query: 424 YRMFTSRAEYRISLR---PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           Y   + +   RI  R    +    RL  + ++       +++   + +++    R   ++
Sbjct: 557 YIKNSKKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLS-------YPDFSIQNLFSICPDARKFSSLVI 533
                + +       K+        +          + D  I++L  + PD     +  +
Sbjct: 617 KEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDF--IMAKQV 674

Query: 534 ERLQIESSY-AAYTGRQMIEA---KEIKFEEKRLI 564
           E+L+ E          Q  +    +  K  E+  +
Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPL 709


>gi|322802783|gb|EFZ22995.1| hypothetical protein SINV_12757 [Solenopsis invicta]
          Length = 548

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 35/204 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++IGGG AG  AA  A +L                       G   +  LV +  A+ 
Sbjct: 54  DILIIGGGPAGLSAAIQARRLAEK-------------------HGKELRVTLVEKASAIG 94

Query: 67  G--LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           G  L G   D   +     N K+  A        D+  +    +R      ++ + +G  
Sbjct: 95  GHILSGACLDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKKRI-----SIPIFKGMP 149

Query: 125 AGFNTEKNIIS--SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA------GRMGD 176
             +N    I+    +V         + V +  G     +++     +        G   D
Sbjct: 150 M-YNHGNYIVRLGHVVTWLGEQAEAAGVEIYAGYAAAEILYHEDGSVKGVATNDVGIAKD 208

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGT 200
                 F   M+          G 
Sbjct: 209 GSPKDTFERGMELHAKCTIFAEGC 232


>gi|322384649|ref|ZP_08058327.1| hypothetical protein PL1_2159 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321150534|gb|EFX44015.1| hypothetical protein PL1_2159 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 596

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSM 44
          +  +YDVIV+G    G  AA  +A+ G  T L+       +G +
Sbjct: 6  LQDNYDVIVVGTDPEGISAALSSARNGLKTLLVDGRNRDRLGGL 49


>gi|313903211|ref|ZP_07836604.1| FAD dependent oxidoreductase [Thermaerobacter subterraneus DSM
          13965]
 gi|313466522|gb|EFR62043.1| FAD dependent oxidoreductase [Thermaerobacter subterraneus DSM
          13965]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YDV+V+G G AG ++A + A  G    L+  K 
Sbjct: 4  YDVVVVGAGLAGLQSARLLAGRGLKVLLLDRKP 36


>gi|309807263|ref|ZP_07701234.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           03V1-b]
 gi|308166354|gb|EFO68562.1| thioredoxin-disulfide reductase [Lactobacillus iners LactinV
           03V1-b]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEDTYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|296111798|ref|YP_003622180.1| thioredoxin reductase (NADPH) [Leuconostoc kimchii IMSNU 11154]
 gi|295833330|gb|ADG41211.1| thioredoxin reductase (NADPH) [Leuconostoc kimchii IMSNU 11154]
          Length = 315

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDV++IG G AG  AA  A++   S  ++
Sbjct: 5  KRYDVVIIGAGPAGMTAATYASRANLSVLML 35


>gi|293400391|ref|ZP_06644537.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306791|gb|EFE48034.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 307

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + R YD+++IG G AG  AA   ++ G   A++  
Sbjct: 1  MERRYDLVIIGAGPAGMSAAIYGSRAGLQVAMLEM 35


>gi|209885136|ref|YP_002288992.1| RemO protein [Oligotropha carboxidovorans OM5]
 gi|209873332|gb|ACI93128.1| RemO protein [Oligotropha carboxidovorans OM5]
          Length = 426

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 27/146 (18%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI----------GSMSCNPAIGGLGKGHL- 58
           V+GGG AG     +  + G  T ++                  ++     +G L      
Sbjct: 25  VVGGGPAGMMLGYLLGRAGIKTLVLEKHADFFRDFRGDTVHPSTLEVMDELGLLDDFLKV 84

Query: 59  ----VREIDALDGLM-GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
               VR+++A  G    R+AD   I+ R   +   P       Q D   +     R    
Sbjct: 85  PHDEVRQLEAQVGTTSIRMADLTRIETRCPFIAFMP-------QWDFLNFIDTQGRR--- 134

Query: 114 QENLDVIQ-GEVAGFNTEKNIISSIV 138
              L+V +  E      + + +S +V
Sbjct: 135 YPALEVRKNAEATDLLFDGDRVSGVV 160


>gi|189485015|ref|YP_001955956.1| thioredoxin reductase [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170286974|dbj|BAG13495.1| thioredoxin reductase [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 302

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          YDVI+IGGG AG  AA  A++    T +I  KT   G M+    +
Sbjct: 3  YDVIIIGGGPAGLSAAIYASRARLKTLIIE-KTGCGGQMTTTDLL 46


>gi|134100746|ref|YP_001106407.1| putative FAD-binding dehydrogenase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291008330|ref|ZP_06566303.1| putative FAD-binding dehydrogenase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133913369|emb|CAM03482.1| fumarate reductase/succinate dehydrogenase flavoprotein
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 553

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +    DVIV+G G AG  A    A+ G    ++
Sbjct: 1  MTDHADVIVVGAGLAGLVATYELARAGRRVLVL 33


>gi|124025419|ref|YP_001014535.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. NATL1A]
 gi|123960487|gb|ABM75270.1| Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. NATL1A]
          Length = 547

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI++ Y+VI+IG G  G  AA   AK G    +          +    A G      + R
Sbjct: 1  MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLV----IERGPELEIKQANGTEPCNMIRR 56

Query: 61 EIDALDG 67
           +    G
Sbjct: 57 LLGVTTG 63


>gi|148253432|ref|YP_001238017.1| oxidoreductase [Bradyrhizobium sp. BTAi1]
 gi|146405605|gb|ABQ34111.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Bradyrhizobium sp. BTAi1]
          Length = 424

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV +IGGG  G  AA   AK GA   ++       G+   N      G  H      A
Sbjct: 25 HYDVAIIGGGFTGLGAALQLAKAGAKVIVLEADQVGSGASGRNGGHLNNGLAHSFLAAKA 84

Query: 65 LDGL 68
            G 
Sbjct: 85 ELGA 88


>gi|332075094|gb|EGI85565.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA17545]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|329920455|ref|ZP_08277187.1| thioredoxin-disulfide reductase [Lactobacillus iners SPIN 1401G]
 gi|328936131|gb|EGG32584.1| thioredoxin-disulfide reductase [Lactobacillus iners SPIN 1401G]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEETYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|331266360|ref|YP_004325990.1| acetoin dehydrogenase complex, E3 component,dihydrolipoamide
           dehydrogenase, putative [Streptococcus oralis Uo5]
 gi|326683032|emb|CBZ00649.1| acetoin dehydrogenase complex, E3 component,dihydrolipoamide
           dehydrogenase, putative [Streptococcus oralis Uo5]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|315653881|ref|ZP_07906797.1| thioredoxin-disulfide reductase [Lactobacillus iners ATCC 55195]
 gi|315488577|gb|EFU78223.1| thioredoxin-disulfide reductase [Lactobacillus iners ATCC 55195]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 56/210 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + YDVI+IG G  G  AA  A++   S A++                    KG     
Sbjct: 1   MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV-------------------DKGL---- 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                G M            + N      + GP  Q   ++Y+ AM+             
Sbjct: 38  ---YGGQM-------NNTGAIDNYPGFADITGP--QLSEKMYQSAMKFGAEY------FY 79

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-------------LRGVIHIGKLK 168
            +V     E+ +   ++ +         V++ TG                RGV +     
Sbjct: 80  ADVQQIIVEQQM-KKVITEK-DEFHAPAVLIATGAVHKHLNIPGEETYQGRGVSYCAVCD 137

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKT 198
               R  +       +S ++      +   
Sbjct: 138 AAFFRNEEIAVIGGGDSAIEEGLYLAQTAK 167


>gi|306825196|ref|ZP_07458538.1| dihydrolipoyl dehydrogenase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432632|gb|EFM35606.1| dihydrolipoyl dehydrogenase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|312113670|ref|YP_004011266.1| HI0933 family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218799|gb|ADP70167.1| HI0933 family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 395

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +DVI+IG G AG   A  A + G    L+  +T   G+      I G G+ +
Sbjct: 7  DFDVIIIGAGAAGLMCALTAGQRGRRVLLLE-RTDKAGA---KILISGGGRCN 55


>gi|282860715|ref|ZP_06269781.1| geranylgeranyl reductase [Streptomyces sp. ACTE]
 gi|282564451|gb|EFB69987.1| geranylgeranyl reductase [Streptomyces sp. ACTE]
          Length = 428

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 12 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 63


>gi|270157995|ref|ZP_06186652.1| succinate dehydrogenase, flavoprotein subunit [Legionella
          longbeachae D-4968]
 gi|289163739|ref|YP_003453877.1| succinate dehydrogenase flavoprotein subunit [Legionella
          longbeachae NSW150]
 gi|269990020|gb|EEZ96274.1| succinate dehydrogenase, flavoprotein subunit [Legionella
          longbeachae D-4968]
 gi|288856912|emb|CBJ10726.1| succinate dehydrogenase flavoprotein subunit [Legionella
          longbeachae NSW150]
          Length = 589

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            +D ++IG G AG  A+   AK G   AL++
Sbjct: 6  NEFDAVIIGAGGAGMRASLQMAKSGLKVALLS 37


>gi|262173956|ref|ZP_06041633.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          mimicus MB-451]
 gi|261891314|gb|EEY37301.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          mimicus MB-451]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|320009207|gb|ADW04057.1| geranylgeranyl reductase [Streptomyces flavogriseus ATCC 33331]
          Length = 427

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 11 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|258622623|ref|ZP_05717644.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          mimicus VM573]
 gi|258585079|gb|EEW09807.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          mimicus VM573]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|258623955|ref|ZP_05718908.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          mimicus VM603]
 gi|258583749|gb|EEW08545.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          mimicus VM603]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|254819791|ref|ZP_05224792.1| dihydrolipoamide dehydrogenase [Mycobacterium intracellulare ATCC
          13950]
          Length = 465

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAVVEPKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+  +     G+ G      G+ F
Sbjct: 61 HIFTKEAKTFGISGEATFDYGVAF 84


>gi|229522311|ref|ZP_04411727.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae TM 11079-80]
 gi|229340296|gb|EEO05302.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae TM 11079-80]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|229528378|ref|ZP_04417769.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae 12129(1)]
 gi|229334740|gb|EEO00226.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae 12129(1)]
 gi|327485755|gb|AEA80161.1| Anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae LMA3894-4]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|254382450|ref|ZP_04997809.1| electron transfer oxidoreductase [Streptomyces sp. Mg1]
 gi|194341354|gb|EDX22320.1| electron transfer oxidoreductase [Streptomyces sp. Mg1]
          Length = 419

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 33 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 84


>gi|159127620|gb|EDP52735.1| fructosyl amino acid oxidasesarcosine oxidase, putative
           [Aspergillus fumigatus A1163]
          Length = 440

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN-------TEKNI 133
           + LNV  G    G    AD        ++ +  Q  +    GEV           T +  
Sbjct: 139 KELNVAGGYINWGS-GWADAAAGVRFAKKLLDEQGKVVFKTGEVDRLLLADGQSATSQRR 197

Query: 134 ISSIVMQDNSMIRCSTVVLTTGT------FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
           ++ +V+ D + +    V+L TG        LRG        I    + D     L N   
Sbjct: 198 VTGVVLTDGTTLTADLVILATGAWTGKLVDLRGRAISTGQAIAYMHISDEEQRRLENIPT 257

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +F  G      P R +   I       Q      IP
Sbjct: 258 VLNFANGIFII--PPRNNLLKIARHAYGYQNPKAVPIP 293


>gi|153824464|ref|ZP_01977131.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae MZO-2]
 gi|149742018|gb|EDM56047.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae MZO-2]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|153829861|ref|ZP_01982528.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae 623-39]
 gi|148874662|gb|EDL72797.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae 623-39]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|149013104|ref|ZP_01833950.1| Dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP19-BS75]
 gi|147763049|gb|EDK69992.1| Dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP19-BS75]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|227812316|ref|YP_002812326.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae M66-2]
 gi|298499545|ref|ZP_07009351.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit [Vibrio
          cholerae MAK 757]
 gi|254798874|sp|C3LW14|GLPB_VIBCM RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Short=Anaerobic G-3-P dehydrogenase subunit
          B; Short=Anaerobic G3Pdhase B
 gi|227011458|gb|ACP07669.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae M66-2]
 gi|297541526|gb|EFH77577.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit [Vibrio
          cholerae MAK 757]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|153215605|ref|ZP_01950050.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae 1587]
 gi|229514197|ref|ZP_04403658.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae TMA 21]
 gi|124114693|gb|EAY33513.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae 1587]
 gi|229348177|gb|EEO13135.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae TMA 21]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|121585600|ref|ZP_01675396.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae 2740-80]
 gi|121550217|gb|EAX60231.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae 2740-80]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|220928489|ref|YP_002505398.1| HI0933 family protein [Clostridium cellulolyticum H10]
 gi|219998817|gb|ACL75418.1| HI0933 family protein [Clostridium cellulolyticum H10]
          Length = 425

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +   +D++++G G AG   A  AA++G    +I  K  
Sbjct: 1  MKNLFDLVIVGAGPAGLMTAKTAAEMGLKVVIIEKKRD 38


>gi|126179655|ref|YP_001047620.1| geranylgeranyl reductase [Methanoculleus marisnigri JR1]
 gi|125862449|gb|ABN57638.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanoculleus marisnigri JR1]
          Length = 365

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +    DV+V+G G AG  AA  AAK G    LI  K  TIG   C
Sbjct: 1  MQNRCDVVVVGAGPAGSTAARYAAKTGLDVLLID-KRRTIGVPVC 44


>gi|297580215|ref|ZP_06942142.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae RC385]
 gi|297535861|gb|EFH74695.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae RC385]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|121725813|ref|ZP_01679113.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae V52]
 gi|147671541|ref|YP_001215526.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae O395]
 gi|153818671|ref|ZP_01971338.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae NCTC 8457]
 gi|229506094|ref|ZP_04395603.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae BX 330286]
 gi|262168591|ref|ZP_06036287.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae RC27]
 gi|172047346|sp|A5EZR7|GLPB_VIBC3 RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Short=Anaerobic G-3-P dehydrogenase subunit
          B; Short=Anaerobic G3Pdhase B
 gi|121631578|gb|EAX63946.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae V52]
 gi|126510824|gb|EAZ73418.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae NCTC 8457]
 gi|146313924|gb|ABQ18464.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae O395]
 gi|227015190|gb|ACP11399.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae O395]
 gi|229356445|gb|EEO21363.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae BX 330286]
 gi|262023120|gb|EEY41825.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae RC27]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|70999780|ref|XP_754607.1| fructosyl amino acid oxidasesarcosine oxidase [Aspergillus
           fumigatus Af293]
 gi|66852244|gb|EAL92569.1| fructosyl amino acid oxidasesarcosine oxidase, putative
           [Aspergillus fumigatus Af293]
          Length = 440

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 49/158 (31%), Gaps = 16/158 (10%)

Query: 81  RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN-------TEKNI 133
           + LNV  G    G    AD        ++ +  Q  +    GEV           T +  
Sbjct: 139 KELNVAGGYINWGS-GWADAAAGVRFAKKLLDEQGKVVFKTGEVDRLLLADGQSATSQRR 197

Query: 134 ISSIVMQDNSMIRCSTVVLTTGT------FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
           ++ +V+ D + +    V+L TG        LRG        I    + D     L N   
Sbjct: 198 VTGVVLTDGTTLTADLVILATGAWTGKLVDLRGRAISTGQAIAYMHISDEEQRRLENIPT 257

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIP 225
             +F  G      P R +   I       Q      IP
Sbjct: 258 VLNFANGIFII--PPRNNLLKIARHAYGYQNPKAVPIP 293


>gi|15601503|ref|NP_233134.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae O1 biovar eltor str. N16961]
 gi|153820734|ref|ZP_01973401.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae B33]
 gi|229510049|ref|ZP_04399529.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae B33]
 gi|229516390|ref|ZP_04405837.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae RC9]
 gi|229605625|ref|YP_002876329.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae MJ-1236]
 gi|255746490|ref|ZP_05420437.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholera CIRS 101]
 gi|262152385|ref|ZP_06028518.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae INDRE 91/1]
 gi|46397433|sp|Q9KLJ6|GLPB_VIBCH RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Short=Anaerobic G-3-P dehydrogenase subunit
          B; Short=Anaerobic G3Pdhase B
 gi|9658169|gb|AAF96646.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae O1 biovar El Tor str. N16961]
 gi|126521777|gb|EAZ79000.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          cholerae B33]
 gi|229346271|gb|EEO11242.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae RC9]
 gi|229352494|gb|EEO17434.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae B33]
 gi|229372111|gb|ACQ62533.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae MJ-1236]
 gi|255736244|gb|EET91642.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholera CIRS 101]
 gi|262030836|gb|EEY49467.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          cholerae INDRE 91/1]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  A + G    LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQAGKKVVLINQ 34


>gi|332201633|gb|EGJ15703.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA47368]
          Length = 572

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|332200476|gb|EGJ14548.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA41317]
          Length = 572

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|332073506|gb|EGI83985.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA17570]
          Length = 572

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|330820916|ref|YP_004349778.1| Succinate dehydrogenase, flavoproteinsubunit [Burkholderia
          gladioli BSR3]
 gi|327372911|gb|AEA64266.1| Succinate dehydrogenase, flavoproteinsubunit [Burkholderia
          gladioli BSR3]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|330827309|ref|XP_003291786.1| flavin-containing amine oxidase [Dictyostelium purpureum]
 gi|325078012|gb|EGC31688.1| flavin-containing amine oxidase [Dictyostelium purpureum]
          Length = 455

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVIV+GGG AG  AA    K G +  ++
Sbjct: 1  MTTLYDVIVVGGGLAGLNAAYEFKKSGLNVLVL 33


>gi|322376558|ref|ZP_08051051.1| dihydrolipoyl dehydrogenase [Streptococcus sp. M334]
 gi|321282365|gb|EFX59372.1| dihydrolipoyl dehydrogenase [Streptococcus sp. M334]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|315613180|ref|ZP_07888090.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis ATCC 49296]
 gi|315314742|gb|EFU62784.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis ATCC 49296]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|315302549|ref|ZP_07873381.1| dihydrolipoyl dehydrogenase [Listeria ivanovii FSL F6-596]
 gi|313629082|gb|EFR97383.1| dihydrolipoyl dehydrogenase [Listeria ivanovii FSL F6-596]
          Length = 446

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITVGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E +  D  MG  AD   + F      KG  V
Sbjct: 64 RFKEANHSDN-MGITADNVSLDFTKAQEWKGSVV 96


>gi|312867892|ref|ZP_07728097.1| thioredoxin-disulfide reductase [Streptococcus parasanguinis F0405]
 gi|311096647|gb|EFQ54886.1| thioredoxin-disulfide reductase [Streptococcus parasanguinis F0405]
          Length = 303

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 45/154 (29%), Gaps = 43/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D ++IG G AG  AA  AA+     ALI                          E    
Sbjct: 2   FDTVIIGAGPAGMTAALYAARSNLKVALI--------------------------ERGIP 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   +D       + N      + GP            M   + +     +  G+V 
Sbjct: 36  GGQMNNTSD-------IENYPGYANISGPELA-------EKMFEPLENLGVEHLF-GQVE 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                      IV  D       T+V+ TG+  R
Sbjct: 81  RIEDHGAT-KKIVTDDG-EFEAKTLVIATGSNHR 112


>gi|307709333|ref|ZP_07645791.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK564]
 gi|307619916|gb|EFN99034.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK564]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|306829528|ref|ZP_07462718.1| dihydrolipoyl dehydrogenase [Streptococcus mitis ATCC 6249]
 gi|304428614|gb|EFM31704.1| dihydrolipoyl dehydrogenase [Streptococcus mitis ATCC 6249]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|301794262|emb|CBW36683.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae INV104]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|296159709|ref|ZP_06842532.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          Ch1-1]
 gi|295890153|gb|EFG69948.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          Ch1-1]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|293365471|ref|ZP_06612180.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus oralis
           ATCC 35037]
 gi|307703427|ref|ZP_07640369.1| dihydrolipoyl dehydrogenase [Streptococcus oralis ATCC 35037]
 gi|291315839|gb|EFE56283.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus oralis
           ATCC 35037]
 gi|307622834|gb|EFO01829.1| dihydrolipoyl dehydrogenase [Streptococcus oralis ATCC 35037]
          Length = 568

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|312199148|ref|YP_004019209.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Frankia sp. EuI1c]
 gi|311230484|gb|ADP83339.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Frankia sp. EuI1c]
          Length = 551

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ SYDV+V+G G AG  AA  AA  GA  AL 
Sbjct: 1  MHNSYDVLVLGSGAAGLTAALSAAVEGARVALF 33


>gi|295700757|ref|YP_003608650.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1002]
 gi|295439970|gb|ADG19139.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1002]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|238024243|ref|YP_002908475.1| succinate dehydrogenase flavoprotein subunit [Burkholderia glumae
          BGR1]
 gi|237878908|gb|ACR31240.1| Succinate dehydrogenase, flavoproteinsubunit [Burkholderia glumae
          BGR1]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|225858948|ref|YP_002740458.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae 70585]
 gi|225720009|gb|ACO15863.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae 70585]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|209520500|ref|ZP_03269258.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          H160]
 gi|209499038|gb|EDZ99135.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          H160]
          Length = 104

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|183603201|ref|ZP_02713189.2| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae SP195]
 gi|183572482|gb|EDT93010.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae SP195]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|183603244|ref|ZP_02710945.2| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC1087-00]
 gi|183603704|ref|ZP_02716647.2| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC0288-04]
 gi|221231874|ref|YP_002511026.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae ATCC
           700669]
 gi|183570494|gb|EDT91022.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC1087-00]
 gi|183573316|gb|EDT93844.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC0288-04]
 gi|220674334|emb|CAR68880.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae ATCC
           700669]
          Length = 561

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 134


>gi|149915472|ref|ZP_01903999.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           protein [Roseobacter sp. AzwK-3b]
 gi|149810761|gb|EDM70602.1| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           protein [Roseobacter sp. AzwK-3b]
          Length = 416

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG------------SMSCNP 48
           M++ + D+ ++GGG  G   A   A+ G S  +I     T+             +++   
Sbjct: 13  MMHDT-DIAIVGGGLNGPALALALARTGLSVTVIDALPETVRKNAAFDGRSYALALASTR 71

Query: 49  AIGGLGKGHLVR-------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
            +  +G    VR       EI   DG  G       + F    +++GP         DR 
Sbjct: 72  LLAAIGIWDRVRDNAQPMLEIKVSDGRAGEGPSPFFMHFDHAEIEEGPMGHMLE---DRF 128

Query: 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           L R A    +     +  I+  V     E    +S+ +     +R   +V + G
Sbjct: 129 L-RRAFLEAMADHPGITQIRDTVVAQQAEAQG-ASLTLASGDTVRTRLIVGSDG 180


>gi|148994510|ref|ZP_01823690.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|194398618|ref|YP_002037772.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae G54]
 gi|147927180|gb|EDK78216.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|194358285|gb|ACF56733.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae G54]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|148985769|ref|ZP_01818897.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP3-BS71]
 gi|147922073|gb|EDK73196.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP3-BS71]
          Length = 531

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 73  DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 104


>gi|148998416|ref|ZP_01825858.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149025514|ref|ZP_01836447.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|307067678|ref|YP_003876644.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase (E3) component-like protein [Streptococcus
           pneumoniae AP200]
 gi|147755813|gb|EDK62858.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147929386|gb|EDK80383.1| site-specific tyrosine recombinase XerC-like protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|306409215|gb|ADM84642.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase (E3) component,-like enzyme [Streptococcus
           pneumoniae AP200]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|149006179|ref|ZP_01829891.1| Dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP18-BS74]
 gi|147761956|gb|EDK68918.1| Dihydrolipoamide dehydrogenase [Streptococcus pneumoniae SP18-BS74]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|126462793|ref|YP_001043907.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104457|gb|ABN77135.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17029]
          Length = 433

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG+ G   A   A+ G S  L+       G+   N    G G+     E++A+ 
Sbjct: 38 DVCVVGGGYTGLSTALHLAERGYSVVLLEAHRMGFGASGRNGGQVGSGQRLEQEELEAMV 97

Query: 67 GL 68
          GL
Sbjct: 98 GL 99


>gi|152997529|ref|YP_001342364.1| FAD dependent oxidoreductase [Marinomonas sp. MWYL1]
 gi|150838453|gb|ABR72429.1| FAD dependent oxidoreductase [Marinomonas sp. MWYL1]
          Length = 427

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + +DV VIG G  G   A   A+ G    ++       G+   N   GG       R+I
Sbjct: 27 EQRFDVCVIGAGFTGISTALSLAERGHKVVVLEGTRIGFGASGRN---GGQIVNSFNRDI 83

Query: 63 DALDGLMGRVA 73
          D +    G V 
Sbjct: 84 DYITAQYGEVI 94


>gi|187921485|ref|YP_001890517.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          phytofirmans PsJN]
 gi|187719923|gb|ACD21146.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          phytofirmans PsJN]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|121611266|ref|YP_999073.1| succinate dehydrogenase, flavoprotein subunit [Verminephrobacter
          eiseniae EF01-2]
 gi|121555906|gb|ABM60055.1| succinate dehydrogenase subunit A [Verminephrobacter eiseniae
          EF01-2]
          Length = 601

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   A+ G + A ++
Sbjct: 11 RKFDVVIVGAGGSGMRAALELARAGLNVAALS 42


>gi|91777244|ref|YP_552452.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          xenovorans LB400]
 gi|91689904|gb|ABE33102.1| succinate dehydrogenase subunit A [Burkholderia xenovorans LB400]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|15891529|ref|NP_357201.1| oxidoreductase [Agrobacterium tumefaciens str. C58]
 gi|15159951|gb|AAK89986.1| oxidoreductase [Agrobacterium tumefaciens str. C58]
          Length = 424

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV VIGGG  G  AA   AK GA   ++  +    G+   N      G  H      A
Sbjct: 25  HYDVAVIGGGFTGLGAARQLAKAGARVVVLEGQRVGWGASGRNGGHLNNGLAHSYLSAKA 84

Query: 65  LDG-----LMGRVADAAGIQFRVL 83
             G      + +  DA       L
Sbjct: 85  ELGKERAIALYQALDACIDTLESL 108


>gi|78043252|ref|YP_359418.1| thioredoxin/thioredoxin-disulfide reductase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995367|gb|ABB14266.1| thioredoxin/thioredoxin-disulfide reductase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 426

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDVIV+GGG AG  AA   A+    T ++
Sbjct: 122 KYDVIVLGGGPAGLSAALYTARAKLRTIVV 151


>gi|77463950|ref|YP_353454.1| hypothetical protein RSP_0378 [Rhodobacter sphaeroides 2.4.1]
 gi|77388368|gb|ABA79553.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 433

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG+ G   A   A+ G S  L+       G+   N    G G+     E++A+ 
Sbjct: 38 DVCVVGGGYTGLSTALHLAERGYSVVLLEAHRMGFGASGRNGGQVGSGQRLEQEELEAMV 97

Query: 67 GL 68
          GL
Sbjct: 98 GL 99


>gi|73670634|ref|YP_306649.1| hypothetical protein Mbar_A3185 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397796|gb|AAZ72069.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 245

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + YDV+V+G G +G  AA   +K G    ++   
Sbjct: 2  KKYDVVVVGAGISGLLAALTLSKHGKKVLVLEKN 35


>gi|299533522|ref|ZP_07046899.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni S44]
 gi|298718480|gb|EFI59460.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni S44]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGFNVACI 33


>gi|264678269|ref|YP_003278176.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni CNB-2]
 gi|262208782|gb|ACY32880.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni CNB-2]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGFNVACI 33


>gi|261409213|ref|YP_003245454.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus sp.
          Y412MC10]
 gi|261285676|gb|ACX67647.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus sp. Y412MC10]
          Length = 580

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          ++IV+GGG AG  A   AA+ GA   L +          C    G  G  +   E D
Sbjct: 4  NIIVVGGGLAGLMATIKAAEAGAHVHLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|168493086|ref|ZP_02717229.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC3059-06]
 gi|183576801|gb|EDT97329.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC3059-06]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|164688255|ref|ZP_02212283.1| hypothetical protein CLOBAR_01900 [Clostridium bartlettii DSM
           16795]
 gi|164602668|gb|EDQ96133.1| hypothetical protein CLOBAR_01900 [Clostridium bartlettii DSM
           16795]
          Length = 410

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 37/222 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIV+GGG +G  AA  AAK   S  LI         +     + G G+ ++       D 
Sbjct: 4   VIVVGGGPSGIMAAISAAKQNHSVTLIERN----EFLGKKLKLTGGGRCNITNNRYIEDF 59

Query: 67  -------GLMGRVADAAGIQFRVLN-VKKGPAVRGPRTQADRELYRLA-----MQREILS 113
                        +  +   + +L+ +           + D ++Y        +   + +
Sbjct: 60  FDKVVNNNKFLYSSFYSFSNYDLLDYLSSIGVEYKIEEENDSKVYTKNDKALDLINSLEN 119

Query: 114 ---QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
               +N+ +I    V     E   I  +V            V +       V++  K+ +
Sbjct: 120 DLRDKNVKIIYNTKVTDLIVEDEKIKGVV------------VTSEENEKSEVLYTDKVIL 167

Query: 170 PAG---RMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKT 208
             G           S++    K      +           +T
Sbjct: 168 STGGKSYAHTGSDGSMYQVLEKHGHTITKTLPALCPLKTAET 209


>gi|221067312|ref|ZP_03543417.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni KF-1]
 gi|220712335|gb|EED67703.1| dihydrolipoamide dehydrogenase [Comamonas testosteroni KF-1]
          Length = 475

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKQFDVVVIGAGPGGYIAAIRAAQLGFNVACI 33


>gi|90407490|ref|ZP_01215673.1| putative 2-polyprenyl-6-methoxyphenol hydroxylase [Psychromonas sp.
           CNPT3]
 gi|90311411|gb|EAS39513.1| putative 2-polyprenyl-6-methoxyphenol hydroxylase [Psychromonas sp.
           CNPT3]
          Length = 385

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-----CNPAIGGLGKGHL 58
           +  ++I++GGG  G  +A + A+ G    LI   T     +         A     K  L
Sbjct: 2   KKREIIIVGGGMVGALSALLLAQQGMIIHLIEKNTVPTCQLDDEFDLRVSAFSAQSKCLL 61

Query: 59  VREIDALDGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRLAM 107
            +     D L   R+    G+Q      +KG A     +Q          A+ +L + A+
Sbjct: 62  QK-AGIWDNLPKARLCAYHGLQT----WEKGSAKLTFDSQDLNLDCLGVMAENQLIQSAL 116

Query: 108 QREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            R +    N+   +Q +V   N   + +  + +     I  S ++   G    
Sbjct: 117 WRALEKLPNVHFYLQQQVININNNASSVC-VSLDSGINISASLLIAADGANSS 168


>gi|70606644|ref|YP_255514.1| ribulose-1,5-biphosphate synthetase [Sulfolobus acidocaldarius
          DSM 639]
 gi|121719146|sp|Q4JAF8|RUBPS_SULAC RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|68567292|gb|AAY80221.1| thiazole biosynthetic enzyme [Sulfolobus acidocaldarius DSM 639]
          Length = 265

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++G G AG  AA   AK G  T + 
Sbjct: 34 DVVIVGAGPAGMSAAYYLAKHGLKTLVF 61


>gi|332203016|gb|EGJ17084.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA47901]
          Length = 572

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|329926883|ref|ZP_08281286.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus sp.
          HGF5]
 gi|328938870|gb|EGG35243.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus sp.
          HGF5]
          Length = 580

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          ++IV+GGG AG  A   AA+ GA   L +          C    G  G  +   E D
Sbjct: 4  NIIVVGGGLAGLMATIKAAEAGAHVHLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|322375257|ref|ZP_08049770.1| dihydrolipoyl dehydrogenase [Streptococcus sp. C300]
 gi|321279520|gb|EFX56560.1| dihydrolipoyl dehydrogenase [Streptococcus sp. C300]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|296156744|ref|ZP_06839582.1| BFD domain protein (2Fe-2S)-binding domain protein [Burkholderia
          sp. Ch1-1]
 gi|295893343|gb|EFG73123.1| BFD domain protein (2Fe-2S)-binding domain protein [Burkholderia
          sp. Ch1-1]
          Length = 478

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I   YD +V+G G AG  AA+  A+ G    +I
Sbjct: 7  IETHYDALVVGAGPAGMSAASALAENGLRVGVI 39


>gi|239943469|ref|ZP_04695406.1| putative FAD-dependent oxidoreductase [Streptomyces roseosporus
          NRRL 15998]
 gi|239989924|ref|ZP_04710588.1| putative FAD-dependent oxidoreductase [Streptomyces roseosporus
          NRRL 11379]
 gi|291446939|ref|ZP_06586329.1| electron transfer oxidoreductase [Streptomyces roseosporus NRRL
          15998]
 gi|291349886|gb|EFE76790.1| electron transfer oxidoreductase [Streptomyces roseosporus NRRL
          15998]
          Length = 427

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 11 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|213585590|ref|ZP_03367416.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 35

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   KGPAVR PR Q D++LY + M+R +  
Sbjct: 1   LKSTKGPAVRAPRAQVDKQLYHIHMKRLLEQ 31


>gi|168704144|ref|ZP_02736421.1| N-methyltryptophan oxidase [Gemmata obscuriglobus UQM 2246]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +++S+DVIV+G G  G  A    A+ G     +  
Sbjct: 1  MSQSFDVIVLGAGGMGSAACFELARRGLKVLGLEQ 35


>gi|168577169|ref|ZP_02722984.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae MLV-016]
 gi|183577228|gb|EDT97756.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae MLV-016]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|29831378|ref|NP_826012.1| electron transfer oxidoreductase [Streptomyces avermitilis
          MA-4680]
 gi|29608493|dbj|BAC72547.1| putative electron transfer oxidoreductase [Streptomyces
          avermitilis MA-4680]
          Length = 434

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 13 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 64


>gi|307706606|ref|ZP_07643413.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK321]
 gi|307618061|gb|EFN97221.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK321]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|307708687|ref|ZP_07645150.1| dihydrolipoamide dehydrogenase [Streptococcus mitis NCTC 12261]
 gi|307615261|gb|EFN94471.1| dihydrolipoamide dehydrogenase [Streptococcus mitis NCTC 12261]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|307111115|gb|EFN59350.1| hypothetical protein CHLNCDRAFT_137794 [Chlorella variabilis]
          Length = 597

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           DV+++G GH G  AA + A+ G    +   K    G+++ +  I   G G
Sbjct: 56  DVLIVGAGHNGLVAATLLARQGLRVEVYEEKDIRPGALAISLTIPPPGAG 105


>gi|326777376|ref|ZP_08236641.1| geranylgeranyl reductase [Streptomyces cf. griseus XylebKG-1]
 gi|326657709|gb|EGE42555.1| geranylgeranyl reductase [Streptomyces cf. griseus XylebKG-1]
          Length = 427

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 11 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 62


>gi|296139138|ref|YP_003646381.1| amine oxidase [Tsukamurella paurometabola DSM 20162]
 gi|296027272|gb|ADG78042.1| amine oxidase [Tsukamurella paurometabola DSM 20162]
          Length = 565

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +V VIGGG AG  AA   AKLG    +       IG    +    G     LV E+ A+
Sbjct: 49  EVAVIGGGLAGLTAAYELAKLGLKPVVYE--ADRIGGRMRSDRFEGYSD-DLVAEMGAM 104


>gi|239906802|ref|YP_002953543.1| thioredoxin reductase [Desulfovibrio magneticus RS-1]
 gi|239796668|dbj|BAH75657.1| thioredoxin reductase [Desulfovibrio magneticus RS-1]
          Length = 309

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +D +VIGGG AG  AA   A+   S A+I
Sbjct: 2  KRFDAVVIGGGPAGITAALYLARSDVSVAMI 32


>gi|189464926|ref|ZP_03013711.1| hypothetical protein BACINT_01270 [Bacteroides intestinalis DSM
           17393]
 gi|189437200|gb|EDV06185.1| hypothetical protein BACINT_01270 [Bacteroides intestinalis DSM
           17393]
          Length = 620

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 107/352 (30%), Gaps = 71/352 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +D++V+GG   G   A  AA+ G  T++I  +T  IG +  N   G        RE 
Sbjct: 20  QNHFDIVVVGGNPGGIMTAIAAARQG-KTSVILERTRHIGGLPAN---GLGATDIATRE- 74

Query: 63  DALDGLMGRV--------ADAAGIQFRVL-NVKKG----PAVRGPRTQADRELYRLAMQR 109
            A  GL            AD  G   + L +   G    P+V     Q     ++  +  
Sbjct: 75  -ATTGLFLEFTSRIKRYYADRYGENSQQLKDCSDGFHFEPSVATTIYQDMLNEHKDKITV 133

Query: 110 EILSQ-----ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR----- 159
            ++ Q     +N+ +  G +              +    M   +T     G         
Sbjct: 134 LLMRQFDAENQNISIKNGRIESICILNRENGKKEIYQGDMFVDATYEGDLGAAAGVPFRI 193

Query: 160 GVIHIGKLKIP-AGRMGD--------SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
           G     +   P AGR  +          +    N+   +++            L  K   
Sbjct: 194 GRESKAEFGEPGAGRAYEYWKSLPASGSTGEADNAVQAYNYRLCLTNDPKIRVLFPKPTS 253

Query: 211 WDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY 270
           +++ E     E +      T K T R +        L+    +ME  +         K  
Sbjct: 254 YNRDEYVPLIEDV-----WTGKNTQRVM--------LKVTDEMMEENRRHIAAGNPTKLP 300

Query: 271 GPRYCPSIEDKIVRFGER-----NGHQIFLEPEGLNTDVVYPNGISTALPEE 317
           G  +       IV+   +     N H  F               IST LPEE
Sbjct: 301 GDSWGIRKLSSIVKLPNQKTDGNNQHAAF---------------ISTDLPEE 337


>gi|182436781|ref|YP_001824500.1| putative FAD-dependent oxidoreductase [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178465297|dbj|BAG19817.1| putative FAD-dependent oxidoreductase [Streptomyces griseus
          subsp. griseus NBRC 13350]
          Length = 442

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 26 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 77


>gi|170691025|ref|ZP_02882191.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          graminis C4D1M]
 gi|170691140|ref|ZP_02882306.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          graminis C4D1M]
 gi|170144274|gb|EDT12436.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          graminis C4D1M]
 gi|170144389|gb|EDT12551.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          graminis C4D1M]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|87308194|ref|ZP_01090336.1| hypothetical protein DSM3645_21392 [Blastopirellula marina DSM
           3645]
 gi|87289276|gb|EAQ81168.1| hypothetical protein DSM3645_21392 [Blastopirellula marina DSM
           3645]
          Length = 624

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VRE 61
            + Y+V+VIG    G  AA  A + G S  L+   TS +G +  N      G  H   R 
Sbjct: 31  KQQYNVVVIGATPCGIAAAVSAGRTGESVLLVEP-TSRLGGLMTN------GLSHPDFRS 83

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRG--PRTQADRELYRLAMQREILSQENLDV 119
            +AL G     AD     +        P  +     T A+  +  L  Q+ +    N+ +
Sbjct: 84  FEALTGFYKEFADRVLAYYAKEYGADSPQAKTSLGGTHAEPRVNLLVFQQMLAELPNITL 143

Query: 120 IQGEVAGFNT--EKNIISSIVMQD--NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +             + I+S+ + D        +  V   GT+   ++    +    GR
Sbjct: 144 LTERQLDRVDVGADHRIASVTLVDRQGDEQTFAGKVFVDGTYEGDLMAAAGVPFSVGR 201


>gi|332358624|gb|EGJ36448.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
           sanguinis SK1056]
          Length = 391

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  AA  ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMAAISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPATDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKSDELFTVRSSDQTWTCLKLIVTTG 163


>gi|312862605|ref|ZP_07722846.1| putative alkyl hydroperoxide reductase, F subunit [Streptococcus
           vestibularis F0396]
 gi|311101865|gb|EFQ60067.1| putative alkyl hydroperoxide reductase, F subunit [Streptococcus
           vestibularis F0396]
          Length = 313

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV++IGGG AG  AA  A + G  T L+ 
Sbjct: 108 YDVLIIGGGPAGNSAAIYATRKGLKTGLLA 137


>gi|308273685|emb|CBX30287.1| hypothetical protein N47_D30960 [uncultured Desulfobacterium sp.]
          Length = 637

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 44/201 (21%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLG 54
            R YD+IV+G G AG  A+A  A+LG +             H  +  G ++ +      G
Sbjct: 31  KRKYDIIVVGTGLAGGSASASLAELGYNVKTFCIQDSPRRAHSIAAQGGINASKNYQNDG 90

Query: 55  KGH-------------LVREIDALDG--LMGRVADAAGIQ---------FRVLNVKKGPA 90
                             RE +      L G + D    Q          ++ N   G A
Sbjct: 91  DSDRRLFYDTIKGGDFRAREANVYRLAQLSGNIIDQCVAQGVPFAREYGGQLANRSFGGA 150

Query: 91  VRG----PRTQADREL----YRLAMQREILSQENLDVIQGEVAGFNTEKN----IISSIV 138
                   R Q  ++L    Y    ++    +  +   +  +     +      ++ ++V
Sbjct: 151 QVSRTFYARGQTGQQLLLGAYSALSRQIAAKKVEMYTRREMLDVVLIDGQARGIVVRNLV 210

Query: 139 MQDNSMIRCSTVVLTTGTFLR 159
             +        VVL TG +  
Sbjct: 211 TGEIEKYAADAVVLATGGYAN 231


>gi|302517298|ref|ZP_07269640.1| ferredoxin reductase [Streptomyces sp. SPB78]
 gi|302426193|gb|EFK98008.1| ferredoxin reductase [Streptomyces sp. SPB78]
          Length = 415

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+GGG  G EAAAVA +LG    L+T     +G         G   G L+R +    G+ 
Sbjct: 166 VVGGGFVGAEAAAVARRLGCEVTLLTDTAQPMGDAL------GDELGALLRTVHQEHGVR 219

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                  G++   +    G A  G R    R L   A+   I ++ N +
Sbjct: 220 IE----TGVRVEEVLADGGRAS-GVRLADGRTLTADAVLVGIGARPNTE 263


>gi|270292745|ref|ZP_06198956.1| TPP-dependent acetoin dehydrogenase complex, E3 component,
           dihydrolipoyl dehydrogenase [Streptococcus sp. M143]
 gi|270278724|gb|EFA24570.1| TPP-dependent acetoin dehydrogenase complex, E3 component,
           dihydrolipoyl dehydrogenase [Streptococcus sp. M143]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|259047275|ref|ZP_05737676.1| fumarate reductase flavoprotein subunit (flavocytochrome c)
           [Granulicatella adiacens ATCC 49175]
 gi|259036051|gb|EEW37306.1| fumarate reductase flavoprotein subunit (flavocytochrome c)
           [Granulicatella adiacens ATCC 49175]
          Length = 584

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +++DV+++G G AG  AA  AAK G S A++      + ++  N  I G        E+
Sbjct: 130 EQTFDVVIVGSGGAGLSAAIEAAKAGKSVAIV----EKMPTVGGNTLISG-------GEM 178

Query: 63  DALDGLMGRVADAAGI 78
           +A    + +     G 
Sbjct: 179 NAPGNWVQKNLGITGD 194


>gi|255280719|ref|ZP_05345274.1| thioredoxin-disulfide reductase [Bryantella formatexigens DSM
           14469]
 gi|255268656|gb|EET61861.1| thioredoxin-disulfide reductase [Bryantella formatexigens DSM
           14469]
          Length = 312

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 70/264 (26%), Gaps = 57/264 (21%)

Query: 1   MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           M  +   YD  ++GGG AG  AA   A+ G  T +   +   IG    +        G  
Sbjct: 1   MAEKKRLYDAAIVGGGPAGLTAAIYLARAGFRTVV--MEKENIGGQVTSTWEVANYPGVS 58

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                 L   M R A   G +F               T+ +RE               L 
Sbjct: 59  ACSGYELADTMQRQAKEFGSEF----------CFAKATELEREEKHWR----------LT 98

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIR--------------CSTVVLTTGTFLRGVIHI 164
             Q EVA          ++V+   ++ R               S      G F RG    
Sbjct: 99  AGQKEVAA--------RAVVLAMGAVPRKAGFDGEEAYTGHGVSYCAACDGAFFRGKEIF 150

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG--------KTIIWDKTEK 216
               +  G         L     K      R +   P  + G              K + 
Sbjct: 151 V---VGGGVAAVEEGIFLTRFARKVTLVVRRDEFSCPPSVSGRIREQEKMDVRFCTKIKA 207

Query: 217 QFADERLIPFSFMTDKITNRQIEC 240
              +  +   +F   +      EC
Sbjct: 208 VAGENAVTEITFYDSRQDREWTEC 231


>gi|218440573|ref|YP_002378902.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7424]
 gi|218173301|gb|ACK72034.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7424]
          Length = 547

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +YDVI+IG GH G   AA   K G    L+  +    G+ +   AI     G
Sbjct: 2  ENYDVIIIGAGHNGLVCAAYLLKAGYKVLLLEKRPVPGGAATTEEAIPDQAPG 54


>gi|220929155|ref|YP_002506064.1| HI0933 family protein [Clostridium cellulolyticum H10]
 gi|219999483|gb|ACL76084.1| HI0933 family protein [Clostridium cellulolyticum H10]
          Length = 408

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 146/434 (33%), Gaps = 81/434 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIVIGGG AG  AA +AA  G    L          +     I G G+ ++  + D    
Sbjct: 4   VIVIGGGPAGMMAAGIAAGRGRDVIL----LEKNNRLGKKLLISGKGRCNITNDTDVEGL 59

Query: 68  LM-----GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ----- 114
           +      G    +A   F   ++      +G  T+ +   R        R++L+      
Sbjct: 60  IENTPGNGNFLYSAFYTFSNQDLIDFFNQKGLSTKVERGGRVFPESDSSRDVLNTLMSFL 119

Query: 115 ------ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
                  N D     V    +++N ++ + + D S +   +V+L  G           + 
Sbjct: 120 NSNGVRINTD---AAVTEILSQENKVTGVRLSDGSTLEAESVILAVG----------GMS 166

Query: 169 IPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
            P        +   +    K       LK      +  +  I D    Q    + +  SF
Sbjct: 167 YPG----TGSTGDGYEMARKLGHTVTPLKPSLVPLITREEWIHDL---QGLSLKNVAVSF 219

Query: 229 MTDK---ITNRQIECGITRTNLETHRIIMENIKHSAI----YSGDIKSYGPRYCPSIEDK 281
             +    I +   E   T   +    I+  +    +         +          ++++
Sbjct: 220 KNNNGKVIYDDFGEMIFTHFGVSGPVILSASRHLLSYDFRNVDLILDLKPALTWEKLDER 279

Query: 282 IVRFGERNGHQIFLE-----------PEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE 330
           + R  ++   + F             P  +    + P      + +E + + +  +  L 
Sbjct: 280 VQRDFDKYSRKQFKNSLDDLLPQKFIPVIIRLSEINPEKPVHQITKEERKKLVTLLKYL- 338

Query: 331 KVNII--RP-------GYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEE---- 377
           K+ I+  RP          I+   INP     T+E+KKI GLF+AG++     Y      
Sbjct: 339 KITIVGARPIKEAIVTAGGIKTSEINP----STMESKKIGGLFMAGEVIDVDAYTGGFNL 394

Query: 378 --AAAQGLVAGINS 389
             A + G +AG+N 
Sbjct: 395 TIAFSTGYLAGLNC 408


>gi|186470391|ref|YP_001861709.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          phymatum STM815]
 gi|186473182|ref|YP_001860524.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          phymatum STM815]
 gi|184195514|gb|ACC73478.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          phymatum STM815]
 gi|184196700|gb|ACC74663.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          phymatum STM815]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|126437453|ref|YP_001073144.1| FAD dependent oxidoreductase [Mycobacterium sp. JLS]
 gi|126237253|gb|ABO00654.1| FAD dependent oxidoreductase [Mycobacterium sp. JLS]
          Length = 520

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +DV+VIG GH G  AAA+  + G  T  +  K
Sbjct: 3  DFDVVVIGAGHNGLTAAALLQRSGLRTVCLEAK 35


>gi|108801468|ref|YP_641665.1| FAD dependent oxidoreductase [Mycobacterium sp. MCS]
 gi|119870621|ref|YP_940573.1| FAD dependent oxidoreductase [Mycobacterium sp. KMS]
 gi|108771887|gb|ABG10609.1| FAD dependent oxidoreductase [Mycobacterium sp. MCS]
 gi|119696710|gb|ABL93783.1| FAD dependent oxidoreductase [Mycobacterium sp. KMS]
          Length = 520

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +DV+VIG GH G  AAA+  + G  T  +  K
Sbjct: 3  DFDVVVIGAGHNGLTAAALLQRSGLRTVCLEAK 35


>gi|123463112|ref|XP_001316923.1| thioredoxin reductase [Trichomonas vaginalis G3]
 gi|23095907|emb|CAD47837.1| thioredoxin reductase [Trichomonas vaginalis]
 gi|121899643|gb|EAY04700.1| thioredoxin reductase [Trichomonas vaginalis G3]
          Length = 304

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  +++D+++IG G  G  AA  AA+ G  T ++
Sbjct: 1  MSAQAFDLVIIGSGPGGSTAALYAARAGLKTVVL 34


>gi|83943577|ref|ZP_00956036.1| hypothetical protein EE36_01710 [Sulfitobacter sp. EE-36]
 gi|83845809|gb|EAP83687.1| hypothetical protein EE36_01710 [Sulfitobacter sp. EE-36]
          Length = 551

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVI++GGG AG  AAA  A  G    LI  +            +GG     L        
Sbjct: 5   DVIIVGGGLAGLVAAAELADRGKQVTLIDQEPEAF--------LGGQAFWSL-------G 49

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAV--RGPRTQADR 100
           GLM  + D+   +   +   +  A+       Q DR
Sbjct: 50  GLM--LIDSPEQRRMGIKDSRELALQDWMGSAQFDR 83


>gi|83954960|ref|ZP_00963638.1| hypothetical protein NAS141_00775 [Sulfitobacter sp. NAS-14.1]
 gi|83840686|gb|EAP79858.1| hypothetical protein NAS141_00775 [Sulfitobacter sp. NAS-14.1]
          Length = 551

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVI++GGG AG  AAA  A  G    LI  +            +GG     L        
Sbjct: 5   DVIIVGGGLAGLVAAAELADRGKQVTLIDQEPEAF--------LGGQAFWSL-------G 49

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAV--RGPRTQADR 100
           GLM  + D+   +   +   +  A+       Q DR
Sbjct: 50  GLM--LIDSPEQRRMGIKDSRELALQDWMGSAQFDR 83


>gi|327470073|gb|EGF15537.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK330]
          Length = 446

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 4   YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   V   ++        L           ++ I
Sbjct: 64  EARRYG----IESKLERIDFEKLVDRKNQVVASLQSGIHASFKSL----------GIEYI 109

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           QG+          +      +   I    V+L TG++
Sbjct: 110 QGQAKFVKDRTFSV------NGKEISGKDVILATGSY 140


>gi|307704799|ref|ZP_07641694.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK597]
 gi|307621628|gb|EFO00670.1| dihydrolipoyl dehydrogenase [Streptococcus mitis SK597]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQLGGKVALV 140


>gi|318062509|ref|ZP_07981230.1| ferredoxin reductase [Streptomyces sp. SA3_actG]
 gi|318078121|ref|ZP_07985453.1| ferredoxin reductase [Streptomyces sp. SA3_actF]
          Length = 380

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+GGG  G EAAAVA +LG    L+T     +G         G   G L+R +    G+ 
Sbjct: 131 VVGGGFVGAEAAAVARRLGCEVTLLTDTAQPMGDAL------GDELGALLRTVHQEHGVR 184

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                  G++   +    G A  G R    R L   A+   I ++ N +
Sbjct: 185 IE----TGVRVEEVLADGGRAS-GVRLADGRTLTADAVLVGIGARPNTE 228


>gi|323529179|ref|YP_004231331.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1001]
 gi|323529265|ref|YP_004231417.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1001]
 gi|323386181|gb|ADX58271.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1001]
 gi|323386267|gb|ADX58357.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1001]
          Length = 591

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|262368877|ref|ZP_06062206.1| oxidoreductase [Acinetobacter johnsonii SH046]
 gi|262316555|gb|EEY97593.1| oxidoreductase [Acinetobacter johnsonii SH046]
          Length = 399

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    YDV+V+G G +G   A +AA+ G    ++         +     + G GK +
Sbjct: 1  MSTNQYDVLVLGAGASGLMTAYMAAQRGRKVVVV----EKANKVGKKILMSGGGKCN 53


>gi|297568133|ref|YP_003689477.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurivibrio alkaliphilus AHT2]
 gi|296924048|gb|ADH84858.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurivibrio alkaliphilus AHT2]
          Length = 298

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD I+IG G  G +AA   A+      LI
Sbjct: 1  MPEQDYDCIIIGAGPGGLQAAIHLARFNRRVILI 34


>gi|167757294|ref|ZP_02429421.1| hypothetical protein CLORAM_02844 [Clostridium ramosum DSM 1402]
 gi|167703469|gb|EDS18048.1| hypothetical protein CLORAM_02844 [Clostridium ramosum DSM 1402]
          Length = 660

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           S +++VIGGG AG EAA + +K G    L
Sbjct: 393 SQNILVIGGGPAGLEAAYILSKRGHKVTL 421


>gi|254302468|ref|ZP_04969826.1| succinate dehydrogenase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322660|gb|EDK87910.1| succinate dehydrogenase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 573

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 55/200 (27%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPA-------I 50
           +  DV+VIG G AG  +A  A + GA   LI  KT          +   N A       +
Sbjct: 128 KETDVVVIGAGGAGLTSAIAAHEKGAKVILIE-KTELLGGNTNYATAGLNAAGTKIQEKL 186

Query: 51  GGLGKGHLVREIDALDG----------------------LMGRVADAA------GIQFRV 82
           G      L  E     G                      L+ R AD +      G   + 
Sbjct: 187 GEKDSPELFYEDTMKGGKNKNNKELVRVLANNSSAIVDWLIARGADLSEITSTGGQSAKR 246

Query: 83  LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQ- 140
            +   G A  GP           A+ +   +++ +D+ +G         KN I  + ++ 
Sbjct: 247 THRPTGGAAVGPNI-------VSALSKTAENEK-IDIRKGTKAIALVKVKNRIVGVKVRE 298

Query: 141 -DNSMI--RCSTVVLTTGTF 157
            D      +   V++ TG F
Sbjct: 299 IDGKEYTIKAKAVIVATGGF 318


>gi|73670476|ref|YP_306491.1| hypothetical protein Mbar_A3017 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397638|gb|AAZ71911.1| UDP-galactopyranose mutase [Methanosarcina barkeri str. Fusaro]
          Length = 484

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVIV+G G +G  AA   +K G    ++
Sbjct: 2  KRYDVIVVGAGISGLLAALTLSKHGKKVLVL 32


>gi|251783309|ref|YP_002997614.1| hypothetical protein SDEG_1918 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242391941|dbj|BAH82400.1| hypothetical protein SDEG_1918 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
          Length = 391

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++      
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGSL 58

Query: 65 LDGLMG 70
           D + G
Sbjct: 59 DDLMAG 64


>gi|218288372|ref|ZP_03492662.1| HI0933 family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241345|gb|EED08519.1| HI0933 family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 426

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 140/446 (31%), Gaps = 92/446 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---D 63
           DV+VIGGG AG  AA  A + GA   L+         +    AI G G+ ++       +
Sbjct: 3   DVLVIGGGPAGLMAAIAAREAGARVLLV----EKGDRLGRKLAISGGGRCNVTNAKPLPE 58

Query: 64  ALDGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR-------ELYRLAMQREILS 113
            +  ++G  +   ++  +F   ++ +     G   +  DR       +  R  ++  +  
Sbjct: 59  LMQNVLGNPKFLYSSFHRFSNEDIIRFFEGLGVALKEEDRGRMFPVSDDARTVVRAVVRH 118

Query: 114 QENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            E L V   +   V     E+     +  +   +I  +  V+ TG      +        
Sbjct: 119 MERLGVEVRLHTPVVRILAEERRFVGVETERGEVIPAAACVIATG---GASVPQTGSTGD 175

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW---------DKTEKQFADE 221
             R   S  +++   +      T         RL G ++                +  D 
Sbjct: 176 GYRFAASVGHTIVPPYPTAVPITSDHPWIRDRRLQGLSLYNIELSIFRGDKLLTVEPGDL 235

Query: 222 RLIPFSFMT--------------------------DKITNRQIECGITRTNLETHRIIME 255
               F                              D   +R  E  +T        +   
Sbjct: 236 VFTHFGLSGPAALRASHYVTVSLRDKPGAQLTASIDVRPDRTFEDWMT--------LFKS 287

Query: 256 NIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE---PEGLNTDVVYPNGIST 312
                       +  G      + D   R      H+  +E   P    +       +S 
Sbjct: 288 TRDRHPKRRLRTELEG-----HVPD---RLAAFVLHEAQVEGEVPLAQASHE-SLMRVSR 338

Query: 313 ALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING- 371
           AL   +      T+P LEK  +   G  ++   I+PK    T++++  +GL+ AG++   
Sbjct: 339 ALK-RLAVPVTGTLP-LEKATVTGGGVNVKE--IDPK----TMQSRLCAGLYFAGEVMDV 390

Query: 372 ---TTGYEEAAA--QGLVAGINSARK 392
              T GY    A   G  AG  +AR 
Sbjct: 391 HAHTGGYNITIAFSTGHTAGSEAARY 416


>gi|196234165|ref|ZP_03132998.1| putative secreted protein-putative xanthan lyase related
           [Chthoniobacter flavus Ellin428]
 gi|196221816|gb|EDY16353.1| putative secreted protein-putative xanthan lyase related
           [Chthoniobacter flavus Ellin428]
          Length = 682

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V GG   G  AA  A++ GAS  +I               IGG+  G L       +
Sbjct: 26  DVLVYGGTPGGLSAALAASREGASVVVIEP----------TRWIGGMVTGGLASTDVGNE 75

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            ++G +A       R    K G  +     + +   +    +  +   +   V    +  
Sbjct: 76  KVIGGIAREFFT--RAAEAKAGTPMWFAEPKVNMATF----KAMLQETKIKVVTDQRLKS 129

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
            + + + I S++  D         +  T  +   ++    +    GR
Sbjct: 130 ISRDGDRIESLMTSDGIRYEAKVFIDAT--YEGDLLARAGVSYAIGR 174


>gi|169832236|ref|YP_001718218.1| hypothetical protein Daud_2097 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639080|gb|ACA60586.1| conserved hypothetical protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 606

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 96/310 (30%), Gaps = 60/310 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G    G  AA  AA+ GA T L++ +            +GGL    ++   D  
Sbjct: 38  FDVIVVGSEPEGIAAAVSAARNGARTLLVSERL----------TLGGLMTAGMLNLTDLD 87

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G + R+       F   +   G +        D E      +  + ++E L V +    
Sbjct: 88  RGHLWRLT--TRGLFLEFHRLVGGSP------FDVERAVQVFEHMVAAEELLTVARP-AR 138

Query: 126 GF--NTEKNIISSIVMQDNSMIRCSTVVLTTG-----TFLRGVIHIGKLKIPAGRMGDSP 178
                 E+  ++ +        R + + L  G     T    +          G+     
Sbjct: 139 DIRPLVEEGRVTGV----GFRYRDAMLFLHAGRVIDATPDGDIAAAAGAPYTYGQADFGR 194

Query: 179 SNSLFNSFMKFDF--------DTGRLKTGTPARLDGKTII-WDKTEKQFADERLIPFSFM 229
             ++  + M               R KT   AR+ G     + K            +  +
Sbjct: 195 EGAMAATLMLHFDGVDWNGVRRAAREKTFGEARVRGNHGRGFGKL--------FTAYEPV 246

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN 289
              +  R     ITR +  T  I           +  I    PR   S+ D   R     
Sbjct: 247 DPGMRLRGFN--ITRQSDGTVVI----------NALLIFGVDPRDPESVADAYRRGKAET 294

Query: 290 GHQI-FLEPE 298
           GH + FL  E
Sbjct: 295 GHVLEFLRRE 304


>gi|2738167|gb|AAB94404.1| succinate dehydrogenase flavoprotein subunit [Bacillus firmus]
          Length = 246

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG  AA   A+ G    L +          C    G  G  +   E D
Sbjct: 6  VIVVGGGLAGLMAAIKVAEKGVPVDLFSLVPVKRPHSVCAQG-GINGAVNTKGEGD 60


>gi|24374812|ref|NP_718855.1| flavocytochrome c flavin subunit [Shewanella oneidensis MR-1]
 gi|24349493|gb|AAN56299.1|AE015767_8 flavocytochrome c flavin subunit [Shewanella oneidensis MR-1]
          Length = 499

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++ +D+I+IG G AG  AA  A K G    ++  K    G
Sbjct: 34 DKEFDIIIIGSGFAGLSAAYSAHKAGIKNIIVLEKMEAFG 73


>gi|329944201|ref|ZP_08292460.1| geranylgeranyl reductase family protein [Actinomyces sp. oral
          taxon 170 str. F0386]
 gi|328530931|gb|EGF57787.1| geranylgeranyl reductase family protein [Actinomyces sp. oral
          taxon 170 str. F0386]
          Length = 433

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIV+G G AG  AA   A LG    L+  K        C   +        VRE+ ++ 
Sbjct: 15 DVIVVGAGPAGSSAAFHMATLGLDVILLE-KQELGRDKVCGDGLTPSA----VRELVSMG 69


>gi|284048274|ref|YP_003398613.1| NADH:flavin oxidoreductase/NADH oxidase [Acidaminococcus fermentans
           DSM 20731]
 gi|283952495|gb|ADB47298.1| NADH:flavin oxidoreductase/NADH oxidase [Acidaminococcus fermentans
           DSM 20731]
          Length = 648

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVR---- 60
           V+V GGG AGCE A    + G    ++  + +             +  + K   V     
Sbjct: 514 VVVFGGGLAGCECAIHLGREGKKVEIVEMRPTLAPDANVRHRPLLLAEIAKTATVHTGYK 573

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
             E+           D +G Q  V       A+ G R++ D
Sbjct: 574 GMEVTREG---ILCTDPSGAQVLVPGDTVICAL-GQRSRTD 610


>gi|261212500|ref|ZP_05926785.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          sp. RC341]
 gi|260838431|gb|EEX65087.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          sp. RC341]
          Length = 436

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLV 59
          M++  YDV VIGGG AG  AA  A + G    LI    S +  S      +G L  G +V
Sbjct: 1  MMH--YDVAVIGGGIAGYSAALRALQTGKKVVLINQGQSALHFSSGSIDVLGRLPDGSVV 58

Query: 60 RE-IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +  DA   L  +  +    +    N +KG
Sbjct: 59 NQPFDAFSALQQQAPEHPYSKVGRKNSEKG 88


>gi|257469468|ref|ZP_05633560.1| thioredoxin reductase [Fusobacterium ulcerans ATCC 49185]
 gi|317063712|ref|ZP_07928197.1| thioredoxin reductase [Fusobacterium ulcerans ATCC 49185]
 gi|313689388|gb|EFS26223.1| thioredoxin reductase [Fusobacterium ulcerans ATCC 49185]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGH 57
          M  + YDVI+IGGG AG  A     +   ST +I   +  IGS+          G  +G 
Sbjct: 1  MNEKIYDVIIIGGGPAGLTAGIYVGRSKLSTLIIE--SEGIGSLLMAHKIDNYPGFPEGI 58

Query: 58 LVREIDALDGLMGRVADAAGIQF 80
            +E+     LM + A+  G +F
Sbjct: 59 SGKELYT---LMKKQAEKFGAEF 78


>gi|241896058|ref|ZP_04783354.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Weissella paramesenteroides ATCC 33313]
 gi|241870706|gb|EER74457.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Weissella paramesenteroides ATCC 33313]
          Length = 468

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +  +YD+IVIG G AG  AA  A +LG   A+       + S+  N      G
Sbjct: 14 LKENYDLIVIGSGAAGMTAAIQAQELGLKAAI----IEKLASLGGNSNRASTG 62


>gi|254449902|ref|ZP_05063339.1| rhodocoxin reductase [Octadecabacter antarcticus 238]
 gi|198264308|gb|EDY88578.1| rhodocoxin reductase [Octadecabacter antarcticus 238]
          Length = 402

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 55/147 (37%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGG+ G EAAAVAAK+G    L+      I      P                    
Sbjct: 148 LVIGGGYIGLEAAAVAAKMGLHVILVEM-MDRILQRVAAP-------------------- 186

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
                      FR L+                               N+D+ +G      
Sbjct: 187 ------ETSNYFRALHGS----------------------------HNVDIREGVGLDRL 212

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTG 155
              + ++  ++ D S I     ++  G
Sbjct: 213 VGDDHVTGAILSDGSKIDVDFAIVGVG 239


>gi|118475060|ref|YP_891346.1| flavocytochrome c flavin subunit [Campylobacter fetus subsp.
          fetus 82-40]
 gi|118414286|gb|ABK82706.1| flavoCytochrome c flavin subunit [Campylobacter fetus subsp.
          fetus 82-40]
          Length = 517

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +  +DV+V+G G AG  AA  A   G  T L       +  +  N AI G  
Sbjct: 33 DEEWDVLVVGSGFAGTAAACQAIDEGVKTLL----IDKMPVLGGNSAINGGA 80


>gi|104779962|ref|YP_606460.1| hypothetical protein PSEEN0719 [Pseudomonas entomophila L48]
 gi|95108949|emb|CAK13645.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 424

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG AG  AA   A+ G +  +       + S+     + G+G  ++    +    
Sbjct: 23  VAVIGGGPAGLMAAEALAQRGVAVQVF----DAMPSVGRKFLLAGVGGMNITHS-EPYPA 77

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVR 92
            +GR A+       +L      A+R
Sbjct: 78  FVGRYAERRDAIDALLRDFDADALR 102


>gi|325913527|ref|ZP_08175892.1| flavocytochrome c [Lactobacillus iners UPII 60-B]
 gi|325477106|gb|EGC80253.1| flavocytochrome c [Lactobacillus iners UPII 60-B]
          Length = 459

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVAHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|332716478|ref|YP_004443944.1| putative FAD-binding dehydrogenase [Agrobacterium sp. H13-3]
 gi|325063163|gb|ADY66853.1| putative FAD-binding dehydrogenase [Agrobacterium sp. H13-3]
          Length = 548

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDVIV+G G AG  AA  A + G S  L+
Sbjct: 2  ERYDVIVVGAGLAGLVAATEAVERGFSVCLV 32


>gi|258450952|ref|ZP_05699004.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262051938|ref|ZP_06024152.1| hypothetical protein SA930_1277 [Staphylococcus aureus 930918-3]
 gi|282925437|ref|ZP_06333092.1| mercuric reductase [Staphylococcus aureus A9765]
 gi|294849239|ref|ZP_06789982.1| mercuric reductase [Staphylococcus aureus A9754]
 gi|257861372|gb|EEV84181.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160195|gb|EEW45225.1| hypothetical protein SA930_1277 [Staphylococcus aureus 930918-3]
 gi|282592531|gb|EFB97542.1| mercuric reductase [Staphylococcus aureus A9765]
 gi|294823771|gb|EFG40197.1| mercuric reductase [Staphylococcus aureus A9754]
          Length = 482

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 50/303 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 44  KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIPSKTLVH--- 98

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +        LD  
Sbjct: 99  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEVN-LLDQH 155

Query: 121 QGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              V              +S++     + +   V  +TG           + +  G +  
Sbjct: 156 DDIVDSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI-- 213

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +    + F         L+ G     R D   + +  T+                 + 
Sbjct: 214 --ALEFASMFANLGSKVTVLERGESFMPREDQDVVAYGITD-----------------LE 254

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGD-------IKSYG--PRYCPSIEDKIVRF 285
           N+ I      TN+ET  +  +N   +   + D       + + G  P    ++E+  +  
Sbjct: 255 NKGIAL---HTNVETTELSSDNHHTTVHTNVDNFEADAVLLAIGRKPNTDLALENTDIEL 311

Query: 286 GER 288
           G+R
Sbjct: 312 GDR 314


>gi|55584976|gb|AAV53700.1| DdmA1 [Stenotrophomonas maltophilia]
          Length = 408

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID--- 63
           +++VIGGG+ G EAAAV +K+G    L+      +  ++         K H+   +D   
Sbjct: 148 NIVVIGGGYIGLEAAAVLSKMGLKVTLLEALPRVLARVAGEDLSTFYQKEHVDHGVDLRT 207

Query: 64  --ALDGLMGRVADAAGIQFR 81
              +D L+G      G+Q  
Sbjct: 208 EVMVDSLVGENGKVTGVQLA 227


>gi|55584978|gb|AAV53701.1| DdmA2 [Stenotrophomonas maltophilia]
          Length = 409

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID--- 63
           +++VIGGG+ G EAAAV +K+G    L+      +  ++         K H+   +D   
Sbjct: 148 NIVVIGGGYIGLEAAAVLSKMGLKVTLLEALPRVLARVAGEDLSTFYQKEHVDHGVDLRT 207

Query: 64  --ALDGLMGRVADAAGIQFR 81
              +D L+G      G+Q  
Sbjct: 208 EVMVDSLVGENGKVTGVQLA 227


>gi|57650051|ref|YP_185525.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87162420|ref|YP_493279.1| putative pyridine nucleotide-disulphide oxidoreductase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|151220769|ref|YP_001331591.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161508833|ref|YP_001574492.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|284023609|ref|ZP_06378007.1| putative pyridine nucleotide-disulphide oxidoreductase
           [Staphylococcus aureus subsp. aureus 132]
 gi|304381806|ref|ZP_07364453.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|57284237|gb|AAW36331.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus COL]
 gi|87128394|gb|ABD22908.1| putative Pyridine nucleotide-disulphide oxidoreductase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|150373569|dbj|BAF66829.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160367642|gb|ABX28613.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|304339592|gb|EFM05539.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196521|gb|EFU26870.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139839|gb|EFW31701.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141828|gb|EFW33656.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313315|gb|AEB87728.1| hypothetical protein SAT0131_00657 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 440

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 50/303 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 2   KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIPSKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +        LD  
Sbjct: 57  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEVN-LLDQH 113

Query: 121 QGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              V              +S++     + +   V  +TG           + +  G +  
Sbjct: 114 DDIVDSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI-- 171

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +    + F         L+ G     R D   + +  T+                 + 
Sbjct: 172 --ALEFASMFANLGSKVTVLERGESFMPREDQDVVAYGITD-----------------LE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGD-------IKSYG--PRYCPSIEDKIVRF 285
           N+ I      TN+ET  +  +N   +   + D       + + G  P    ++E+  +  
Sbjct: 213 NKGIAL---HTNVETTELSSDNHHTTVHTNVDNFEADAVLLAIGRKPNTDLALENTDIEL 269

Query: 286 GER 288
           G+R
Sbjct: 270 GDR 272


>gi|328884308|emb|CCA57547.1| Geranylgeranyl reductase [Streptomyces venezuelae ATCC 10712]
          Length = 428

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   AK G    L+  KT+      C   +       LV
Sbjct: 12 DVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRATKQLV 63


>gi|319939108|ref|ZP_08013472.1| dihydrolipoamide dehydrogenase [Streptococcus anginosus 1_2_62CV]
 gi|319812158|gb|EFW08424.1| dihydrolipoamide dehydrogenase [Streptococcus anginosus 1_2_62CV]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           N +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 NDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 140


>gi|297159503|gb|ADI09215.1| putative FAD-dependent oxidoreductase [Streptomyces
          bingchenggensis BCW-1]
          Length = 428

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           R+ DVIV+G G AG   A   AK G    L+  KT+      C   +         +E+
Sbjct: 8  ERTADVIVVGAGPAGSTTAYYLAKAGLDVLLLE-KTAFPREKVCGDGLTPRA----TKEL 62

Query: 63 DALD 66
           A+ 
Sbjct: 63 VAMG 66


>gi|256372594|ref|YP_003110418.1| protoporphyrinogen oxidase [Acidimicrobium ferrooxidans DSM
          10331]
 gi|256009178|gb|ACU54745.1| protoporphyrinogen oxidase [Acidimicrobium ferrooxidans DSM
          10331]
          Length = 447

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +VIV+GGG +G  AA  AA+ GAS  L+   +  +G       +GG 
Sbjct: 2  NVIVVGGGISGLAAAWEAARHGASVMLLE-SSDRLGGKLLTSHVGGS 47


>gi|158335926|ref|YP_001517100.1| succinate dehydrogenase flavoprotein subunit [Acaryochloris
          marina MBIC11017]
 gi|158306167|gb|ABW27784.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Acaryochloris marina MBIC11017]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAK 26
           +DV+++GGG AGC AA   A+
Sbjct: 3  EHDVVIVGGGLAGCRAALEIAR 24


>gi|113476095|ref|YP_722156.1| succinate dehydrogenase flavoprotein subunit [Trichodesmium
           erythraeum IMS101]
 gi|110167143|gb|ABG51683.1| succinate dehydrogenase subunit A [Trichodesmium erythraeum IMS101]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 46/240 (19%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +D+I++GGG AGC AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDIIIVGGGLAGCRAAVEIARKNPSLNVAVVAKTHPIRSHSVAAQGGIAASLRNVDTKD 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQA--- 98
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  SWEAHAFDTVKGSDYLADQDAVEILAKEAPDVIIDLEHLGVLF-SRLPDGRIAQRAFGGH 121

Query: 99  --DRELYRL-----AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQ-----DN 142
             +R  Y       A+  E+++   +  + + +   V     E      +VM      D 
Sbjct: 122 SHNRTCYAADKTGHAILHELVNNLRRYGVHIYEEWYVMRLILEDTQAKGVVMYHIWDGDI 181

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF--DFDTGRLKTG 199
            ++R   V+  TG + R            G  +  +    L    M+F     TG    G
Sbjct: 182 VVLRAKVVMFATGGYGRVFNTTSNDYASTGDGLAMAAMAGLPLQDMEFVQFHPTGLYPAG 241


>gi|327540089|gb|EGF26683.1| FAD dependent oxidoreductase [Rhodopirellula baltica WH47]
          Length = 602

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-----CNPAIGGLGKGHLV 59
            +D++++GGG +GC AA  A   G   ALI  +    G+ S         I G   G L 
Sbjct: 193 EFDLVIVGGGISGCGAALAARSQGLKVALIQDRPIFGGNASEEIRVHTLGIHGRAAGILK 252

Query: 60  R 60
           +
Sbjct: 253 K 253


>gi|312141183|ref|YP_004008519.1| dihydrolipoamide dehydrogenase/branched-chain alpha-ketoacid
          dehydrogenase [Rhodococcus equi 103S]
 gi|325673995|ref|ZP_08153685.1| dihydrolipoyl dehydrogenase [Rhodococcus equi ATCC 33707]
 gi|311890522|emb|CBH49840.1| dihydrolipoamide dehydrogenase/branched-chain alpha-ketoacid
          dehydrogenase [Rhodococcus equi 103S]
 gi|325555260|gb|EGD24932.1| dihydrolipoyl dehydrogenase [Rhodococcus equi ATCC 33707]
          Length = 467

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG  TA+I  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLKTAIIEEKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLV-REIDALD 66
          H+  +E  A  
Sbjct: 61 HIFHKEAKAFG 71


>gi|255292384|dbj|BAH89503.1| mercuric reductase MerA [uncultured bacterium]
          Length = 477

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 34/164 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             ++D+ VIG G AG  AA  AA+ G   ALI H   TIG    N     +G       I
Sbjct: 12  QNTFDLAVIGAGSAGFSAAITAAEGGKRVALIGH--GTIGGTCVN-----VGCVPSKTMI 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            A + + G                + P + G    AD      A    +       + Q 
Sbjct: 65  RAAEAMHGAQT-----------AHRFPGLNGEAQVADWSALIAAKDHLVA-----TLRQK 108

Query: 123 EVAGFNTEKNIIS-----------SIVMQDNSMIRCSTVVLTTG 155
           + A        ++             V      I    V++ TG
Sbjct: 109 KYADLLPGYGGVTYLDEGPARLVPGGVDVGGRRITAPKVIVATG 152


>gi|222053342|ref|YP_002535704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221562631|gb|ACM18603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 1031

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + + DV+V+GGG +G +AA   A  G    L+
Sbjct: 14 MAQKKFIDVLVVGGGISGIQAALDLANSGFKVYLV 48


>gi|295840674|ref|ZP_06827606.1| ferredoxin reductase [Streptomyces sp. SPB74]
 gi|197696235|gb|EDY43168.1| ferredoxin reductase [Streptomyces sp. SPB74]
          Length = 415

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+GGG  G EAAAVA +LG    L+T     +G         G   G L+R +    G+ 
Sbjct: 166 VVGGGFVGAEAAAVARRLGCEVTLLTDTAQPMGDAL------GDELGALLRTVHQEHGVR 219

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                  G +   +    G A  G R    R L   A+   I ++ N +
Sbjct: 220 IE----TGARVEEVLADGGRAS-GVRLADGRTLTADAVLVGIGARPNTE 263


>gi|77361056|ref|YP_340631.1| 3-ketosteroid-delta1-dehydrogenase [Pseudoalteromonas
          haloplanktis TAC125]
 gi|76875967|emb|CAI87189.1| 3-ketosteroid-delta1-dehydrogenase [Pseudoalteromonas
          haloplanktis TAC125]
          Length = 574

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 2  INRSYDVIVIGGGHAGCE-AAAVAAKLGASTALITHKTSTIG 42
          + ++YDVIV+G G AG   AA  AA  G S  ++  KT   G
Sbjct: 7  VEKNYDVIVVGSG-AGAMTAALFAADQGNSVLIVE-KTDKYG 46


>gi|32473502|ref|NP_866496.1| hypothetical protein RB5084 [Rhodopirellula baltica SH 1]
 gi|32398182|emb|CAD78277.1| similar to mitochondrial glycerol-3-phosphate dehydrogenase
           [Rhodopirellula baltica SH 1]
          Length = 616

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-----CNPAIGGLGKGHLV 59
            +D++++GGG +GC AA  A   G   ALI  +    G+ S         I G   G L 
Sbjct: 207 EFDLVIVGGGISGCGAALAARSQGLKVALIQDRPIFGGNASEEIRVHTLGIHGRAAGILK 266

Query: 60  R 60
           +
Sbjct: 267 K 267


>gi|332558822|ref|ZP_08413144.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides WS8N]
 gi|332276534|gb|EGJ21849.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides WS8N]
          Length = 433

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG+ G   A   A+ G S  L+       G+   N    G G+     E++A+ 
Sbjct: 38 DVCVVGGGYTGLSTALHLAERGYSVVLLEAHRMGFGASGRNGGQVGSGQRLEQEELEAMV 97

Query: 67 GL 68
          GL
Sbjct: 98 GL 99


>gi|322517671|ref|ZP_08070534.1| NADH dehydrogenase [Streptococcus vestibularis ATCC 49124]
 gi|322123659|gb|EFX95251.1| NADH dehydrogenase [Streptococcus vestibularis ATCC 49124]
          Length = 327

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YDV++IGGG AG  AA  A + G  T L+ 
Sbjct: 122 YDVLIIGGGPAGNSAAIYATRKGLKTGLLA 151


>gi|312872071|ref|ZP_07732146.1| flavocytochrome c [Lactobacillus iners LEAF 2062A-h1]
 gi|311092364|gb|EFQ50733.1| flavocytochrome c [Lactobacillus iners LEAF 2062A-h1]
          Length = 459

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVAHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|237735625|ref|ZP_04566106.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381370|gb|EEO31461.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 649

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           S +++VIGGG AG EAA + +K G    L
Sbjct: 382 SQNILVIGGGPAGLEAAYILSKRGHKVTL 410


>gi|195977436|ref|YP_002122680.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195974141|gb|ACG61667.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 390

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          YD I+IGGG AG  AA  ++  G  T L          +    A  G G+ ++     
Sbjct: 4  YDTIIIGGGPAGMMAAISSSYYGHKTLL----LDKNRRLGKKLAGTGGGRCNVTNSGS 57


>gi|294676266|ref|YP_003576881.1| FAD dependent oxidoreductase [Rhodobacter capsulatus SB 1003]
 gi|294475086|gb|ADE84474.1| FAD dependent oxidoreductase [Rhodobacter capsulatus SB 1003]
          Length = 446

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 63/446 (14%), Positives = 122/446 (27%), Gaps = 99/446 (22%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-------GLGKGHLV 59
           DV+V+G G AG  AA   A  G    ++      +     +   G          +  ++
Sbjct: 22  DVVVVGAGIAGVMAAHFLALAGRRVVVLE--KGRVAGEQSSRNWGWIRQQGRDPAELPIM 79

Query: 60  RE-IDALDGLMGRVA-----DAAGIQFRVLNVKKGPAVRG---------------PRTQA 98
           +E +   +GL   +         G+ +         A                   R Q 
Sbjct: 80  QEAMRLWEGLAAELGPELGFRRCGVAYLSDKPATAEAFAAWVDLARAHGLESHHLGRAQL 139

Query: 99  DRELYRLAMQREILSQE---------------------NLDVIQG-EVAGFNTEKNIISS 136
              +         L                         + VI+   V   +     ++ 
Sbjct: 140 AAAIPHATNWVTGLITPSDARAEPFVAVPMLAERARRAGVTVIEHCAVRALDIAAGQVAG 199

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRL 196
           +V ++   IRC+ V++  G +    +    L +P   +    + +      +    +G  
Sbjct: 200 VVTENGR-IRCAQVLVAAGAWSSLFLRRHGLSLPQ--LLVRSTVAQTVPLPEITQVSGVD 256

Query: 197 KTGT-PARLDGKTIIWDKTEKQF--ADERLIPFSFMTDKITNRQIECGITRTNLETHRII 253
                  RLDG   +   T   F    + L  F     ++     +  I     E     
Sbjct: 257 DVFAWRRRLDGSYTVAPGTSHDFYLGPDALRHFGKYMPQMRRDLSKTAIHPRAPE----- 311

Query: 254 MENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTA 313
                             P +        +   +R              + V+       
Sbjct: 312 ------------------PGWPDGWTTARMWSEDRESPFERCRILDPAPNRVFL------ 347

Query: 314 LPEEIQHQFIRTIPGLEKVNIIR-PGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT 372
               +Q  F R  P L +  ++R     I+   + P  + P L+   + GL++A    G 
Sbjct: 348 --HNVQRAFGRAFPSLGEPKLVRDWAGMID---VMPDTV-PVLDAAPLPGLYVA---TGL 398

Query: 373 TGYEEAAAQGLVAGINSARKSNKLDC 398
           +G+      G+  G   A        
Sbjct: 399 SGHGFGIGPGV--GRVMASLMTGEAP 422


>gi|254518910|ref|ZP_05130966.1| hypothetical protein CSBG_01486 [Clostridium sp. 7_2_43FAA]
 gi|226912659|gb|EEH97860.1| hypothetical protein CSBG_01486 [Clostridium sp. 7_2_43FAA]
          Length = 407

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIVIG G AG  AA  A+K      L+      +G       I G G+ ++    D  + 
Sbjct: 4   VIVIGAGPAGMMAAITASKNNNDVILLEAN-EKLG---KKLFITGKGRCNVTNIKDISEF 59

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I F      K  A RG R    +D+    +      L
Sbjct: 60  FDYIPGNPHFLYSALYTYTNEDTINFFESQGIKLKAERGGRVFPFSDKSSDIIKGLSNEL 119

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           S+ N++V     V   N ++  I S+ + D  +++    ++ TG
Sbjct: 120 SKNNVEVKLNSKVTDINLKEGKIESVKVNDEYLLKADYFIIATG 163


>gi|225571890|ref|ZP_03780760.1| hypothetical protein CLOHYLEM_07864 [Clostridium hylemonae DSM
          15053]
 gi|225159455|gb|EEG72074.1| hypothetical protein CLOHYLEM_07864 [Clostridium hylemonae DSM
          15053]
          Length = 96

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +D+IV+GGG  G  AA  AAK G S  L 
Sbjct: 6  VKEEFDLIVVGGGPGGYSAAITAAKKGLSVILF 38


>gi|229541485|ref|ZP_04430545.1| thioredoxin reductase [Bacillus coagulans 36D1]
 gi|229325905|gb|EEN91580.1| thioredoxin reductase [Bacillus coagulans 36D1]
          Length = 315

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA  A++    T +I
Sbjct: 4  EQIYDVIIIGAGPAGMTAAVYASRSDLKTLMI 35


>gi|120402625|ref|YP_952454.1| flavoprotein disulfide reductase [Mycobacterium vanbaalenii PYR-1]
 gi|119955443|gb|ABM12448.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Mycobacterium vanbaalenii PYR-1]
          Length = 495

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 25/165 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSM----SCNPAIGGLGKGHLVREI 62
           +++IGGG AG EAA VAA LG   T +    +  +G       C P+   +    +  E+
Sbjct: 29  IVIIGGGPAGYEAALVAAGLGRDLTQVTVIDSDGLGGACVLYDCVPSKTFIASTGVRTEL 88

Query: 63  DALDGLMGRVA---DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G MG      DA     ++ N  K  A                +  ++L+Q  + +
Sbjct: 89  RRAQG-MGFDIGIDDAPISLPKINNRVKTLAASQ----------SADIGSQLLNQ-GVTI 136

Query: 120 I--QGE-VAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLR 159
           I  +GE V       +    +   D    +++   V++ TG   R
Sbjct: 137 IGGRGELVDDIAGMAHHRVKVTTSDGKVGVLKADVVLIATGASPR 181


>gi|22297694|ref|NP_680941.1| geranylgeranyl hydrogenase [Thermosynechococcus elongatus BP-1]
 gi|22293871|dbj|BAC07703.1| geranylgeranyl hydrogenase [Thermosynechococcus elongatus BP-1]
          Length = 402

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 16/33 (48%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          V V+GGG AG  AA   AK G  T L   K   
Sbjct: 5  VAVVGGGPAGSSAAETLAKAGIQTYLFERKLDN 37


>gi|325289344|ref|YP_004265525.1| 2,4-dienoyl-CoA reductase (NADPH) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964745|gb|ADY55524.1| 2,4-dienoyl-CoA reductase (NADPH) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 707

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG  G EAA VAA+ G +  L        G +     I G     ++ E  A   
Sbjct: 448 VLVIGGGPGGLEAARVAAERGHAVTLF----EQTGDLGGQYIIAGRSPHKVMMENAA--R 501

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
            +G +A  AG+  R+    K    R    Q D
Sbjct: 502 HLGYLAMRAGVNVRL--YTKATPERIQALQPD 531


>gi|294054363|ref|YP_003548021.1| glucose-inhibited division protein A [Coraliomargarita
          akajimensis DSM 45221]
 gi|293613696|gb|ADE53851.1| glucose-inhibited division protein A [Coraliomargarita
          akajimensis DSM 45221]
          Length = 783

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+ +IGGG AGC AA  AA+ G    L+
Sbjct: 41 DLCIIGGGLAGCCAAITAARAGIQVVLV 68


>gi|289434316|ref|YP_003464188.1| dihydrolipoamide dehydrogenase E3 subunit [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
 gi|289170560|emb|CBH27100.1| dihydrolipoamide dehydrogenase E3 subunit [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
          Length = 467

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITVGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E +  D  MG  AD   + F      KG  V
Sbjct: 64 RFKEANHSDN-MGITADNVSLDFTKAQEWKGSVV 96


>gi|283778043|ref|YP_003368798.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Pirellula staleyi DSM 6068]
 gi|283436496|gb|ADB14938.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Pirellula staleyi DSM 6068]
          Length = 515

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 71/236 (30%), Gaps = 32/236 (13%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG- 67
           +V+GGG  GCE A   A+LG+   ++  +   +       A   + +      I      
Sbjct: 211 LVVGGGPIGCELAQAFARLGSRVTIV-QRPDRLLPHDEPDASAIVAQQFANESIAVYTAC 269

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
            + R +   G+    L    G A    +   D+ L  +A  R    Q N       VA  
Sbjct: 270 EVARTSQQHGVIEVELKFAGGQAAGPQKIVVDKIL--IAAGR----QPN-------VADL 316

Query: 128 NTEKNIISSIV-MQDNSMI-----RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
             E   ++ +        +       +  +  +G  +   +        +  +  +    
Sbjct: 317 GLE---VAGVKYTSRGIEVNDFLQTSNPKIYASGDVIGRQLFTHAADAMSRAVLQNAFFF 373

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ 237
                 +           T   +    +   +       E+ IPF+   ++IT   
Sbjct: 374 GSKRLSQLVIPRCTY---TDPEIASIGLTASQLS-----EKNIPFTSYREEITRND 421


>gi|269216592|ref|ZP_06160446.1| putative FAD-binding domain protein [Slackia exigua ATCC 700122]
 gi|269130121|gb|EEZ61203.1| putative FAD-binding domain protein [Slackia exigua ATCC 700122]
          Length = 549

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +  +DVIV G G AG  AA   AK G+  + +  +     +  C+P   G   G 
Sbjct: 49  DEEFDVIVCGAGIAGLSAAITVAKEGSGQSCLLIEKEA-SAAGCSPVCAGDFLGR 102


>gi|226362179|ref|YP_002779957.1| hypothetical protein ROP_27650 [Rhodococcus opacus B4]
 gi|226240664|dbj|BAH51012.1| putative monooxygenase [Rhodococcus opacus B4]
          Length = 516

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 27/165 (16%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD-- 66
           +V G G  G   A   A+ G    ++             P  G  GKG   R  + +D  
Sbjct: 7   VVAGAGPTGLTLALELARRGVEVRILDKSPE--------PFPGSRGKGLTARSQEVMDDL 58

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR---------------ELYRLAMQREI 111
           G++  + DA           +G  V      AD                +     + RE 
Sbjct: 59  GIVDEIVDAGFRHLPSRVAVRGQVVSDGDPHADLSPTPDRPYDSGLMIPQWQTERILRER 118

Query: 112 LSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           LS+  +DV +G EV GF    + ++ + +     I    +V   G
Sbjct: 119 LSEFGIDVERGVEVVGFEQTTDKVT-VRLAGGGTIMARYLVGCDG 162


>gi|254469747|ref|ZP_05083152.1| 2-octaprenyl-6-methoxyphenol hydroxylase, putative [Pseudovibrio
          sp. JE062]
 gi|211961582|gb|EEA96777.1| 2-octaprenyl-6-methoxyphenol hydroxylase, putative [Pseudovibrio
          sp. JE062]
          Length = 420

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +SYD  VIG G AG  AA   A  G  T LI
Sbjct: 22 EKSYDCAVIGTGPAGMIAALALASNGLETVLI 53


>gi|182415094|ref|YP_001820160.1| FAD dependent oxidoreductase [Opitutus terrae PB90-1]
 gi|177842308|gb|ACB76560.1| FAD dependent oxidoreductase [Opitutus terrae PB90-1]
          Length = 479

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDVIVIG G  G   A V AK G    L+ H 
Sbjct: 12 EYDVIVIGSGLGGLTGANVLAKAGHRVLLLEHH 44


>gi|110678909|ref|YP_681916.1| dihydrolipoamide dehydrogenase [Roseobacter denitrificans OCh
          114]
 gi|109455025|gb|ABG31230.1| dihydrolipoamide dehydrogenase [Roseobacter denitrificans OCh
          114]
          Length = 462

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G   A   A+LG   A +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGSGPGGYVCAIRCAQLGLKVACVEGR-DTLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL+G+
Sbjct: 62 EAEHNFAAMGLVGK 75


>gi|24374580|ref|NP_718623.1| flavocytochrome c flavin subunit, putative [Shewanella oneidensis
           MR-1]
 gi|24349187|gb|AAN56067.1|AE015742_3 flavocytochrome c flavin subunit, putative [Shewanella oneidensis
           MR-1]
          Length = 517

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
            +   DV+V+G G AG  AA  A + G    +       +     N  I G    +    
Sbjct: 44  FDEIVDVLVVGSGFAGMSAALQARESGVKVMV----IDKMPVFGGNSTINGGAMAVAGSP 99

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
           L ++    D +   VAD       +L   +G
Sbjct: 100 LQKQAGIEDSVDAMVAD-------MLRAGRG 123


>gi|194337047|ref|YP_002018841.1| dihydrolipoamide dehydrogenase [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194309524|gb|ACF44224.1| dihydrolipoamide dehydrogenase [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 478

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N+ +DV+VIG G  G  AA  AA+LG S A  
Sbjct: 1  MNKQFDVLVIGAGPGGYIAAIRAAQLGFSVACC 33


>gi|315649363|ref|ZP_07902452.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus
          vortex V453]
 gi|315275351|gb|EFU38720.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus
          vortex V453]
          Length = 580

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          ++IV+GGG AG  A   AA+ GA   L +          C    G  G  +   E D
Sbjct: 4  NIIVVGGGLAGLMATIKAAEAGAHVHLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|294102565|ref|YP_003554423.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Aminobacterium colombiense DSM 12261]
 gi|293617545|gb|ADE57699.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Aminobacterium colombiense DSM 12261]
          Length = 451

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIV+GGG  G +AA +AA+ G  T +I
Sbjct: 2  YDVIVLGGGPGGNKAAELAARNGLKTVMI 30


>gi|238059338|ref|ZP_04604047.1| geranylgeranyl reductase [Micromonospora sp. ATCC 39149]
 gi|237881149|gb|EEP69977.1| geranylgeranyl reductase [Micromonospora sp. ATCC 39149]
          Length = 382

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MIN  +D++V+GGG AG  AA VAA  G  T ++
Sbjct: 1  MIN--WDLVVVGGGPAGLSAAHVAATAGLRTLVV 32


>gi|225869814|ref|YP_002745761.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225699218|emb|CAW92496.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 390

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          YD I+IGGG AG  AA  ++  G  T L          +    A  G G+ ++     
Sbjct: 4  YDTIIIGGGPAGMMAAISSSYYGYKTLL----LDKNKRLGKKLAGTGGGRCNVTNSGS 57


>gi|189346996|ref|YP_001943525.1| dihydrolipoamide dehydrogenase [Chlorobium limicola DSM 245]
 gi|189341143|gb|ACD90546.1| dihydrolipoamide dehydrogenase [Chlorobium limicola DSM 245]
          Length = 473

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  MINRSYD--VIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  R+YD  + VIG G  G EAA  AA+LG    L+
Sbjct: 5  MEKRAYDADLAVIGSGPGGYEAALRAARLGMKVILV 40


>gi|126741394|ref|ZP_01757067.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Roseobacter sp. SK209-2-6]
 gi|126717511|gb|EBA14240.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Roseobacter sp. SK209-2-6]
          Length = 661

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+GGG AG EAA VAA+ G    L
Sbjct: 388 VLVVGGGPAGLEAARVAAERGHRVIL 413


>gi|313633888|gb|EFS00605.1| dihydrolipoyl dehydrogenase [Listeria seeligeri FSL N1-067]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITVGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E +  D  MG  AD   + F      KG  V
Sbjct: 64 RFKEANHSDN-MGITADNVSLDFTKAQEWKGSVV 96


>gi|255081556|ref|XP_002508000.1| predicted protein [Micromonas sp. RCC299]
 gi|226523276|gb|ACO69258.1| predicted protein [Micromonas sp. RCC299]
          Length = 491

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 59/185 (31%), Gaps = 37/185 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSM---SCNPAIGGLGKGH 57
            +DVIV+G G AG   A      G +  L+    S     +G +        +  LG  H
Sbjct: 15  EWDVIVVGAGVAGASLAYALGNEGRNVLLLERDLSEPVRIVGELLQPGGYLKLKELGLEH 74

Query: 58  LVREIDAL----------DGLM-------GRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
            V  IDA            G         GR  D AG  F   N +    +R      D+
Sbjct: 75  CVDNIDAQKVYGYAMYKDGGEALVGYPLEGRGDDVAGRSFH--NGRFVMRLREAALGCDK 132

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS----MIRCSTVVLTTGT 156
              R A  +++L+       Q  V G   E   I  +   +N            V+  G 
Sbjct: 133 VTVRQATVKKLLNTNG----QEWVDG---EGVPIGGVAATENETEQKEYFAPLTVVCDGY 185

Query: 157 FLRGV 161
           F    
Sbjct: 186 FSSFR 190


>gi|239623941|ref|ZP_04666972.1| NADH oxidase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521972|gb|EEQ61838.1| NADH oxidase [Clostridiales bacterium 1_7_47FAA]
          Length = 659

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V+V+GGG AG EAA V+A  G    L+   
Sbjct: 401 NVLVVGGGIAGMEAARVSAMRGHQVTLVEMN 431


>gi|149184347|ref|ZP_01862665.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Erythrobacter sp. SD-21]
 gi|148831667|gb|EDL50100.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Erythrobacter sp. SD-21]
          Length = 470

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YDV+VIG G  G  AA  AA+LG  TA 
Sbjct: 1  MAQYDYDVLVIGAGPGGYVAAIRAAQLGLKTAC 33


>gi|55378830|ref|YP_136680.1| geranylgeranyl hydrogenase [Haloarcula marismortui ATCC 43049]
 gi|55231555|gb|AAV46974.1| geranylgeranyl hydrogenase [Haloarcula marismortui ATCC 43049]
          Length = 360

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDV+V+G G AG   A  AA  G    +   
Sbjct: 2  YDVVVVGAGPAGSRYARQAASRGLDVVVFEQ 32


>gi|15965482|ref|NP_385835.1| soluble pyridine nucleotide transhydrogenase [Sinorhizobium
          meliloti 1021]
 gi|307302603|ref|ZP_07582359.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sinorhizobium meliloti BL225C]
 gi|307318450|ref|ZP_07597884.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sinorhizobium meliloti AK83]
 gi|15074663|emb|CAC46308.1| Probable soluble pyridine nucleotide transhydrogenase
          [Sinorhizobium meliloti 1021]
 gi|306895790|gb|EFN26542.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sinorhizobium meliloti AK83]
 gi|306902967|gb|EFN33558.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sinorhizobium meliloti BL225C]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
            YD+IV+G G AG   A  AAKLG    +I  
Sbjct: 2  NQYDLIVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|323138783|ref|ZP_08073847.1| dihydrolipoamide dehydrogenase [Methylocystis sp. ATCC 49242]
 gi|322395931|gb|EFX98468.1| dihydrolipoamide dehydrogenase [Methylocystis sp. ATCC 49242]
          Length = 479

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YD+IVIGGG  G  AA  AA+LG  TA++
Sbjct: 1  MSEAYDLIVIGGGPGGYVAAIRAAQLGLKTAVV 33


>gi|313905204|ref|ZP_07838572.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Eubacterium cellulosolvens 6]
 gi|313469957|gb|EFR65291.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Eubacterium cellulosolvens 6]
          Length = 526

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + Y++IV+G G +G  AA  AAK G  TA+ 
Sbjct: 2  KRYELIVVGAGPSGLSAAIEAAKRGIRTAVF 32


>gi|307328617|ref|ZP_07607790.1| geranylgeranyl reductase [Streptomyces violaceusniger Tu 4113]
 gi|306885729|gb|EFN16742.1| geranylgeranyl reductase [Streptomyces violaceusniger Tu 4113]
          Length = 436

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 13/99 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            RS DVIV+G G AG   A   AK G    L+  KT+      C   +       LV   
Sbjct: 16  ERSADVIVVGAGPAGSTTAYHLAKAGLDVVLLE-KTAFPREKVCGDGLTPRATKQLV--- 71

Query: 63  DALDGLMGRVADAAG-IQFRVLNVKKGPAVRGPRTQADR 100
            A+      +++ AG ++ R L +  G    G R Q D 
Sbjct: 72  -AMG---IDISEEAGWLRNRGLRIIAG----GVRLQLDW 102


>gi|296165487|ref|ZP_06848019.1| probable dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899155|gb|EFG78629.1| probable dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 568

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D++V+G GH G  AAA  AK G    ++     T G M+   +       + + E     
Sbjct: 11 DIVVVGSGHNGLVAAAYLAKAGLDVLVVEASP-TAGGMTSTNSFAPEAPEYTINEASIQA 69

Query: 67 GL 68
           L
Sbjct: 70 SL 71


>gi|153008273|ref|YP_001369488.1| dihydrolipoamide dehydrogenase [Ochrobactrum anthropi ATCC 49188]
 gi|151560161|gb|ABS13659.1| dihydrolipoamide dehydrogenase [Ochrobactrum anthropi ATCC 49188]
          Length = 471

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG S A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLSVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLGKMLAHKDTTVKANVTGVEFLFKKNKITAFI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTAEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|126725634|ref|ZP_01741476.1| hypothetical protein RB2150_05498 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704838|gb|EBA03929.1| hypothetical protein RB2150_05498 [Rhodobacterales bacterium
           HTCC2150]
          Length = 433

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG+ G  AA   A+LG    L+       G+   N   G +  G  V +    D
Sbjct: 38  DVCVIGGGYTGLSAALHLAQLGRKVILLEAHRVGFGASGRNG--GQMSSGQRVDQDTLED 95

Query: 67  GLMGRVADAAGIQFRVLNVKK 87
                  DAA   + +    K
Sbjct: 96  SF---GLDAAHALWDMGEAAK 113


>gi|76802431|ref|YP_327439.1| thioredoxin reductase-like protein [Natronomonas pharaonis DSM
          2160]
 gi|76558296|emb|CAI49884.1| thioredoxin reductase homolog [Natronomonas pharaonis DSM 2160]
          Length = 258

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV+++GGG AG  A    A+    T ++ H 
Sbjct: 7  DYDVVIVGGGPAGLSAGVFTARADFRTLVVEHN 39


>gi|15835460|ref|NP_297219.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Nigg]
 gi|270285640|ref|ZP_06195034.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Nigg]
 gi|270289649|ref|ZP_06195951.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum Weiss]
 gi|301337036|ref|ZP_07225238.1| dihydrolipoamide dehydrogenase [Chlamydia muridarum MopnTet14]
 gi|14194687|sp|Q9PJI3|DLDH_CHLMU RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|7190873|gb|AAF39644.1| 2-oxo acid dehydrogenase, E3 component, lipoamide dehydrogenase,
           putative [Chlamydia muridarum Nigg]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           +N ++D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIEEREAGGTCLNRGCIPSKALLASAEIV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I        R AD  GI          PA+   +    R + R  +   I S + + V
Sbjct: 61  AQI--------RHADQFGIHIN-GFSIDYPAMVQRKDTVVRSI-RDGLNGLIRSNK-ITV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
             G  +  ++ +  I     +  S+I+  +++L TG+  R  
Sbjct: 110 FSGRGSLISSTEVKILG---ETPSVIKAQSIILATGSEPRAF 148


>gi|94313312|ref|YP_586521.1| tryptophan halogenase [Cupriavidus metallidurans CH34]
 gi|93357164|gb|ABF11252.1| Monooxygenase, FAD-binding:FAD dependent oxidoreductase:Tryptophan
           halogenase [Cupriavidus metallidurans CH34]
          Length = 409

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 22/163 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M   + DV+++G G AG  AA +  K G    +I     T        +IG       + 
Sbjct: 1   MKKETVDVLIVGAGPAGSVAAGLLRKRGIGVLVIE--KETFPRF----SIGESLLPQSMA 54

Query: 61  EIDALDGLMGRVADAAGIQFRV-------------LNVKKGPAVRGPRTQADRELYRLAM 107
            I+     M +    AG Q++                 +K     G   Q  R  +   +
Sbjct: 55  YIEEAG--MLQAVVEAGFQYKNGAAFARGDRYTDFDFREKFSPGWGTTYQVQRAHFDDVL 112

Query: 108 QREILSQENLDVIQGEVAGFNTEKNI-ISSIVMQDNSMIRCST 149
            RE   Q      +  V   +      + ++   D ++ +  +
Sbjct: 113 IREAQKQGAEVRFRHVVEAVDVSGAAPVVTVRDPDGNVYQVES 155


>gi|325911314|ref|ZP_08173727.1| flavocytochrome c [Lactobacillus iners UPII 143-D]
 gi|325476874|gb|EGC80027.1| flavocytochrome c [Lactobacillus iners UPII 143-D]
          Length = 459

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|322820734|gb|EFZ27265.1| trypanothione reductase, putative [Trypanosoma cruzi]
          Length = 492

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          M+ + +D++VIG G  G EAA  AA L   
Sbjct: 1  MMPKIFDLVVIGAGSGGLEAAWNAATLYKK 30


>gi|317032733|ref|XP_001394308.2| monooxygenase [Aspergillus niger CBS 513.88]
          Length = 441

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV GGG AG   A +  K G    L+      + ++    A+   G   L+ ++   + 
Sbjct: 8   VIVAGGGVAGLSLALMLEKHGIDFLLLEAYPDVVAAVGAGIALAPNGL-RLIEQLGCYED 66

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPR-----TQADRELYRLAM--QREILS--QENLD 118
           L    A A  + FR      G  + G          ++  Y      ++ +L     N+ 
Sbjct: 67  LQKCSAGADQVHFR---KPDGEILWGMDEGLAEACIEKHGYTYVWMDRKSLLEVLYNNIA 123

Query: 119 ----VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               V+ G+     T  +    +V  D S      +V T GT  +    + +     G  
Sbjct: 124 DKSKVLPGKRVASVTHTDEGVDVVTTDGSTYSADIIVGTDGTHSKLRQEMARYAKVLGLS 183

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
            D        +     F       G P+R
Sbjct: 184 KDYAEEDKVAAAYSCIFGMSDPVAGFPSR 212


>gi|319793732|ref|YP_004155372.1| faD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Variovorax paradoxus EPS]
 gi|315596195|gb|ADU37261.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Variovorax paradoxus EPS]
          Length = 300

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVREI 62
          YD +V+GGG AG  AA   A+   S AL+     + + I      P  G    G  VR++
Sbjct: 2  YDALVVGGGPAGLLAAVYLARFRRSVALLDAGQSRIARIPQSHNYPGFGDGVSGAAVRDM 61


>gi|307325933|ref|ZP_07605132.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces violaceusniger Tu 4113]
 gi|306888425|gb|EFN19412.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces violaceusniger Tu 4113]
          Length = 518

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+++GGGH G  AAA  A+ G S  ++
Sbjct: 7  YDVVIVGGGHNGLVAAAYLARAGRSVLVL 35


>gi|239636101|ref|ZP_04677115.1| dihydrolipoyl dehydrogenase [Staphylococcus warneri L37603]
 gi|239598372|gb|EEQ80855.1| dihydrolipoyl dehydrogenase [Staphylococcus warneri L37603]
          Length = 450

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 25/160 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSCNPAIGGLGKGHLV 59
           +  +YD++VIG G  G  AA  AA+LG S A+I   H   T  ++ C P+   L  G  V
Sbjct: 1   MASNYDLVVIGAGPGGYVAAIRAAQLGKSVAIIEKQHVGGTCLNVGCIPSKTLLEFGSQV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I A + L G       I +  L   K   V                  ++L + N+++
Sbjct: 61  HQIHAANDL-GITTGHLNIDYPRLFEHKNNIVHTLTNGV----------TQLLKKNNVEL 109

Query: 120 IQGEV---AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           IQGE     G   E          +   ++   ++L TG+
Sbjct: 110 IQGEAVVKDGLTIE---------MNQQSLKARDIILATGS 140


>gi|154483541|ref|ZP_02025989.1| hypothetical protein EUBVEN_01245 [Eubacterium ventriosum ATCC
          27560]
 gi|149735451|gb|EDM51337.1| hypothetical protein EUBVEN_01245 [Eubacterium ventriosum ATCC
          27560]
          Length = 405

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DVI+IG G +G  AA  AA  GA   +I H+            + G GK ++  
Sbjct: 2  DVIIIGAGASGLMAAITAANQGAKVTVIEHE----NKPGKKILVTGNGKCNITN 51


>gi|134078986|emb|CAK40638.1| unnamed protein product [Aspergillus niger]
          Length = 410

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV GGG AG   A +  K G    L+      + ++    A+   G   L+ ++   + 
Sbjct: 8   VIVAGGGVAGLSLALMLEKHGIDFLLLEAYPDVVAAVGAGIALAPNGL-RLIEQLGCYED 66

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPR-----TQADRELYRLAM--QREILS--QENLD 118
           L    A A  + FR      G  + G          ++  Y      ++ +L     N+ 
Sbjct: 67  LQKCSAGADQVHFR---KPDGEILWGMDEGLAEACIEKHGYTYVWMDRKSLLEVLYNNIA 123

Query: 119 ----VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               V+ G+     T  +    +V  D S      +V T GT  +    + +     G  
Sbjct: 124 DKSKVLPGKRVASVTHTDEGVDVVTTDGSTYSADIIVGTDGTHSKLRQEMARYAKVLGLS 183

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
            D        +     F       G P+R
Sbjct: 184 KDYAEEDKVAAAYSCIFGMSDPVAGFPSR 212


>gi|89054211|ref|YP_509662.1| dihydrolipoamide dehydrogenase [Jannaschia sp. CCS1]
 gi|88863760|gb|ABD54637.1| dihydrolipoamide dehydrogenase [Jannaschia sp. CCS1]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +++D+IVIG G  G  AA  A++LG  TA++       I    G +     +     
Sbjct: 1   MAAQNFDLIVIGAGPGGYVAAIRASQLGLKTAIVEREHMGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             AD  G    +V++  +  A +     A            ++ +
Sbjct: 61  FHLMHRAKEFG----LSADGIGYDLDKVVDRSRKVAKQLSGGVA-----------HLMKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
             +  I GE       K  +S +     +  +    ++L TG   R +
Sbjct: 106 NKITTIMGEAT--IPAKGKVS-VKTDKGTEELTAKNIILATGARAREL 150


>gi|91790176|ref|YP_551128.1| BFD-like protein [Polaromonas sp. JS666]
 gi|91699401|gb|ABE46230.1| BFD-like (2Fe-2S)-binding region [Polaromonas sp. JS666]
          Length = 463

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-PAIGGLGKGHLV- 59
          + R +DV+VIG G AG  AA      G S  ++  + +  G +     A+     G L+ 
Sbjct: 1  MTREFDVVVIGAGPAGMSAAIGLRGQGLSVLVVDEQPAPGGQIWRAVEAVAPTPTGRLLG 60

Query: 60 REIDALDGLMGRVA 73
           E  A  GL GR  
Sbjct: 61 DEYRAGAGLAGRFR 74


>gi|216220|dbj|BAA33809.1| NADH oxidase [Amphibacillus xylanus]
          Length = 509

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 45/157 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+VIGGG AG  +A  AA+ G    +I                            D  
Sbjct: 209 FDVLVIGGGPAGASSAIYAARKGIRVGIIA---------------------------DRF 241

Query: 66  DGLMGRVADAAGI-QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            G +    D  GI  F      +GP +               +++ + ++ N+DV++G  
Sbjct: 242 GGQVM---DTLGIENFIGTKYTEGPKLIS------------EIEQHV-NEYNIDVMKGLR 285

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           A  N EK  +  + + + ++++  T++L TG   R +
Sbjct: 286 AH-NIEKKDLFEVQLDNGAVLKSKTIILATGARWRDI 321


>gi|331699587|ref|YP_004335826.1| hypothetical protein Psed_5849 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954276|gb|AEA27973.1| Conserved hypothetical protein CHP03083 [Pseudonocardia
           dioxanivorans CB1190]
          Length = 661

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++R+YDVIV+G   AG   A V A  GA   L+        ++S +          L+ E
Sbjct: 1   MDRAYDVIVVGARCAGSALATVLADAGARVLLLDRDPLPSDTVSTHLLFPDAVA--LLDE 58

Query: 62  IDALDGLMGRVADAAGIQF--RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD- 118
           + ALD L G   +   +QF  RV   + G A   P    D       ++R +L    LD 
Sbjct: 59  LGALDRLAG-AHELPWLQFGWRVHGHEVGGAF-TPVGGFDL---ATCVRRNVLDAALLDG 113

Query: 119 -------VIQG-EVAGFN---TEKNIISSIVMQDNSMIRCSTVVLTTG 155
                  V       G     T+++ +  +V+ D + +    VV   G
Sbjct: 114 AIAAGAEVRSDCAAVGLIGAGTDEDPVRGVVLADGARLAAGRVVGADG 161


>gi|169631205|ref|YP_001704854.1| dihydrolipoamide dehydrogenase [Mycobacterium abscessus ATCC
          19977]
 gi|169243172|emb|CAM64200.1| Probable dihydrolipoamide dehydrogenase [Mycobacterium abscessus]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG  TA++  K        +G +     +      
Sbjct: 1  MTAHYDVVVLGAGPGGYVAAIRAAQLGLKTAIVEEKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+  +     G+ G      G  F
Sbjct: 61 HIFTKEAKTFGISGEATFDFGAAF 84


>gi|91773065|ref|YP_565757.1| geranylgeranyl reductase [Methanococcoides burtonii DSM 6242]
 gi|91712080|gb|ABE52007.1| Geranylgeranyl reductase [Methanococcoides burtonii DSM 6242]
          Length = 399

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 10/155 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVREID 63
           YDV+V+G G  G  AA  A   GA   +I    S    + C   +      +  +  E D
Sbjct: 3   YDVVVVGAGPTGSTAARYATMGGAKVLIIEEHFSIGSPVECTGLLSTRAVSECDVRPEDD 62

Query: 64  -ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
             L+ + G   ++       ++ K+  A    R   DR L  LA+           +++G
Sbjct: 63  FVLNSVRGAFVNSPNGTCLPIDGKRTKAYVVSRKIFDRHLVSLAVDTGAE-----LMLKG 117

Query: 123 EVAGFNTEKNIISSIVMQDNSMI--RCSTVVLTTG 155
            V G   +  I    V+    MI  R   V+   G
Sbjct: 118 RVTGIQQKDGIQLLSVIHMGKMITVRSKVVIGADG 152


>gi|56476595|ref|YP_158184.1| NADH oxidase (NOXB-2 [Aromatoleum aromaticum EbN1]
 gi|56312638|emb|CAI07283.1| NADH oxidase (NOXB-2 [Aromatoleum aromaticum EbN1]
          Length = 656

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +++IG G AG EAA  A + G    +   K   IG      ++ G     L R  D +  
Sbjct: 393 IMIIGAGPAGMEAAITAKRRGHEVTVFE-KGDRIGG-----SLAGYAANDLARPDDLISV 446

Query: 68  LMGRVADAAGIQFRVLNVKKGPA--VRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           +      A  ++  V    +  A  +R    Q D  +     + ++ +  +++  +  V 
Sbjct: 447 IKYYETMARKMEIDVRFNTEANAKFMRSILHQFDVCIVAAGSRTDMKAYRHIEGHEQLVD 506

Query: 126 GFNTEKNIIS 135
             +     ++
Sbjct: 507 ALDVATGKVT 516


>gi|320106130|ref|YP_004181720.1| geranylgeranyl reductase [Terriglobus saanensis SP1PR4]
 gi|319924651|gb|ADV81726.1| geranylgeranyl reductase [Terriglobus saanensis SP1PR4]
          Length = 394

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + R +DVIV+G G AGC AA      G    L+   
Sbjct: 9  LTRWWDVIVVGAGPAGCSAAYDLVLSGRRVLLLDKN 44


>gi|282898485|ref|ZP_06306475.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Raphidiopsis brookii D9]
 gi|281196651|gb|EFA71557.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Raphidiopsis brookii D9]
          Length = 575

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAK 26
           +DV+++GGG AGC AA   A+
Sbjct: 3  EHDVVIVGGGLAGCRAALEIAR 24


>gi|209546560|ref|YP_002278478.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537804|gb|ACI57738.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 490

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+GGG AG EAA VAA+ G    L
Sbjct: 202 VLVVGGGPAGLEAARVAAERGHRVIL 227


>gi|78223398|ref|YP_385145.1| NADH:flavin oxidoreductase/NADH oxidase [Geobacter metallireducens
           GS-15]
 gi|78194653|gb|ABB32420.1| NADH:flavin oxidoreductase/NADH oxidase [Geobacter metallireducens
           GS-15]
          Length = 645

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           ++V+GGG AG EAA V A  G    L+     T G +  
Sbjct: 387 ILVVGGGPAGMEAARVLATRGHKVTLLEKNRQTGGRLGT 425


>gi|85714479|ref|ZP_01045467.1| succinate dehydrogenase [Nitrobacter sp. Nb-311A]
 gi|85698926|gb|EAQ36795.1| succinate dehydrogenase [Nitrobacter sp. Nb-311A]
          Length = 607

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + +YDVIV+G G AG  A     + G  TA IT
Sbjct: 20 DHTYDVIVVGAGGAGLRAVVGCGQAGLRTACIT 52


>gi|313899684|ref|ZP_07833187.1| thioredoxin-disulfide reductase [Clostridium sp. HGF2]
 gi|312955299|gb|EFR36964.1| thioredoxin-disulfide reductase [Clostridium sp. HGF2]
          Length = 308

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV +IGGG AG  AA   A+   S  ++
Sbjct: 1  MNKQIYDVAIIGGGPAGYSAALYCARSALSVLVL 34


>gi|302549189|ref|ZP_07301531.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
 gi|302466807|gb|EFL29900.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
          Length = 537

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 22 HRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 53


>gi|307728773|ref|YP_003905997.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. CCGE1003]
 gi|307583308|gb|ADN56706.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. CCGE1003]
          Length = 498

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 111 ILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           + ++ NL +  G EV     E +  + +V  D +     TVVL  G F    I +     
Sbjct: 207 VRARPNLMIKGGVEVDRVVIEGSRATGVVDVDGNRYSAGTVVLCAGAFGSPAILMRSGIG 266

Query: 170 PAGRMGDS-----PSNSLFNSFMKFDFDTGRL 196
           PA  + D          +     +  F     
Sbjct: 267 PADHLNDLNIPLVADLPVGKRLQEHPFYYNVY 298


>gi|296134671|ref|YP_003641913.1| FAD dependent oxidoreductase [Thiomonas intermedia K12]
 gi|295794793|gb|ADG29583.1| FAD dependent oxidoreductase [Thiomonas intermedia K12]
          Length = 437

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++GGG AG  AA    K G    L+  +    G+   N   GG        E++  +
Sbjct: 37  DVCIVGGGLAGLSAALELRKRGMQVVLLEGRHIGWGASGRN---GGQALAGYASEMEPFE 93

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
             +G  +     +   L+  +    R  +   D +    AM
Sbjct: 94  RQLGAKSAHFAWEMS-LDAIRLLRERIAQYAIDCDWTPGAM 133


>gi|224827180|ref|ZP_03700275.1| FAD dependent oxidoreductase [Lutiella nitroferrum 2002]
 gi|224600573|gb|EEG06761.1| FAD dependent oxidoreductase [Lutiella nitroferrum 2002]
          Length = 499

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSCNPAIGGL-----G 54
          +   YDV+V+GGG  GC  A +AA+ G S  L+      +   S S     GGL     G
Sbjct: 1  MRDHYDVLVVGGGINGCGIANLAAQCGLSVLLVEQDDLAAHTSSASSKLIHGGLRYLEYG 60

Query: 55 KGHLVREIDALDGLMGRVA 73
          +  LVRE  A   ++  +A
Sbjct: 61 EFRLVREALAEREVLLAMA 79


>gi|254284295|ref|ZP_04959263.1| phytoene dehydrogenase [gamma proteobacterium NOR51-B]
 gi|219680498|gb|EED36847.1| phytoene dehydrogenase [gamma proteobacterium NOR51-B]
          Length = 528

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD IVIG GH G  AA   A+ G    ++  
Sbjct: 3  DYDAIVIGAGHNGLTAANYLARGGMRVCVLEQ 34


>gi|167747724|ref|ZP_02419851.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
 gi|167653086|gb|EDR97215.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD+IV+G G +G  AA  AAK G +  + 
Sbjct: 2  KRYDLIVVGAGPSGLSAAIEAAKKGMNVIVF 32


>gi|186477485|ref|YP_001858955.1| hypothetical protein Bphy_2737 [Burkholderia phymatum STM815]
 gi|184193944|gb|ACC71909.1| HI0933 family protein [Burkholderia phymatum STM815]
          Length = 422

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V V+GGG AG  AA   A+ G    +       + S+     + G G  ++   
Sbjct: 14 VAVVGGGPAGLMAAEALARGGVRVDVY----DAMPSVGRKFLMAGKGGMNITHS 63


>gi|84490095|ref|YP_448327.1| dehydrogenase [Methanosphaera stadtmanae DSM 3091]
 gi|121717104|sp|Q2NER9|GGR3_METST RecName: Full=Digeranylgeranylglycerophospholipid reductase 3;
          Short=DGGGPL reductase 3; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase 3; AltName: Full=Geranylgeranyl reductase 3;
          Short=GGR 3
 gi|84373414|gb|ABC57684.1| predicted dehydrogenase [Methanosphaera stadtmanae DSM 3091]
          Length = 397

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          M  +  DV++IG G AG  AA  A+K GA T +I  K+       C   I
Sbjct: 1  MNIKEVDVLIIGAGPAGSLAAREASKNGAKTLIIDKKSEIGTPKRCAEGI 50


>gi|17547877|ref|NP_521279.1| transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17430183|emb|CAD16946.1| putative fad-dependent pyridine nucleotide-disulphide
          oxidoreductase; transmembrane protein [Ralstonia
          solanacearum GMI1000]
          Length = 425

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +      ++ S      + G+G  ++    +A D 
Sbjct: 10 VAVIGAGPAGLMAAEVLSRAGVRVEVF----DSMPSAGRKFLLAGIGGMNITHS-EAFDA 64

Query: 68 LMGRVADA 75
           +GR    
Sbjct: 65 FLGRYRAR 72


>gi|154246353|ref|YP_001417311.1| FAD dependent oxidoreductase [Xanthobacter autotrophicus Py2]
 gi|154160438|gb|ABS67654.1| FAD dependent oxidoreductase [Xanthobacter autotrophicus Py2]
          Length = 431

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+G G+AG  AA   A+ GA   ++       G    N  +   G   +   I A  
Sbjct: 31 DVAVVGAGYAGLSAALRLAEAGARVTVLEAAEVGFGGAGRNVGLVNAGLWVMPDVIRAAL 90

Query: 67 GL 68
          G 
Sbjct: 91 GE 92


>gi|291320029|ref|YP_003515287.1| thioredoxin reductase [Mycoplasma agalactiae]
 gi|290752358|emb|CBH40329.1| Thioredoxin reductase [Mycoplasma agalactiae]
          Length = 307

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV++IG G  G  AA  A++ G  T ++
Sbjct: 7  YDVVIIGAGPGGLNAALYASRSGLKTLIV 35


>gi|289548637|ref|YP_003473625.1| geranylgeranyl reductase [Thermocrinis albus DSM 14484]
 gi|289182254|gb|ADC89498.1| geranylgeranyl reductase [Thermocrinis albus DSM 14484]
          Length = 348

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          DV+V+G G AG   A   +K GA   L+  K +    + C
Sbjct: 7  DVLVVGAGPAGSTCAWELSKRGAKVILVDFKRAVGVPVQC 46


>gi|226951560|ref|ZP_03822024.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter sp.
          ATCC 27244]
 gi|294651217|ref|ZP_06728545.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          haemolyticus ATCC 19194]
 gi|226837702|gb|EEH70085.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter sp.
          ATCC 27244]
 gi|292822870|gb|EFF81745.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          haemolyticus ATCC 19194]
          Length = 630

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          S+D +++GGG +G  AA   A+ G   A++T
Sbjct: 16 SFDAVIVGGGGSGMRAAYQLAQAGLKVAVLT 46


>gi|260799342|ref|XP_002594656.1| hypothetical protein BRAFLDRAFT_288182 [Branchiostoma floridae]
 gi|229279891|gb|EEN50667.1| hypothetical protein BRAFLDRAFT_288182 [Branchiostoma floridae]
          Length = 530

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           +V+V+G G  G   AA   +      +I         I      P    A+  LG G  V
Sbjct: 79  EVLVVGAGILGSAMAAALGQDRRRVVVIERDLRQPDRIVGELLQPGGLQALRALGLGGAV 138

Query: 60  REIDA--LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             IDA  + G +    D+           +  AV   R+      + + ++RE   Q ++
Sbjct: 139 EGIDAHHVQGYVVHDLDSGKNVKLTYPKDESCAVMEGRS-FHHGRFIMGLRREAQKQASV 197

Query: 118 DVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
            +++G V     E+  I  +V           IR    V+  G F R  
Sbjct: 198 SMLEGTVTKLLEEEGRIVGVVYKDKQTDTVKEIRAPLTVVADGCFSRFR 246


>gi|170079071|ref|YP_001735709.1| geranylgeranyl reductase [Synechococcus sp. PCC 7002]
 gi|169886740|gb|ACB00454.1| geranylgeranyl reductase [Synechococcus sp. PCC 7002]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG  AA + AK G  T +   K     +  C    GG     +V E D    
Sbjct: 5   VAVVGGGPAGSSAAEILAKAGIETYIFERKLD--NAKPC----GGAIPLCMVDEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           L   + D    + ++++        G   + D   Y    +RE+
Sbjct: 55  LPPEIIDRRVRKMKMISPSNIEVNIGQTLKDD--EYIGMCRREV 96


>gi|170742860|ref|YP_001771515.1| N-methyltryptophan oxidase [Methylobacterium sp. 4-46]
 gi|168197134|gb|ACA19081.1| Sarcosine oxidase [Methylobacterium sp. 4-46]
          Length = 376

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++++YDVIV+G G  G  A    A+ G     +
Sbjct: 1  MSQTYDVIVLGIGGMGSAACWQLARRGQRVLGL 33


>gi|157363177|ref|YP_001469944.1| dihydrolipoamide dehydrogenase [Thermotoga lettingae TMO]
 gi|157313781|gb|ABV32880.1| dihydrolipoamide dehydrogenase [Thermotoga lettingae TMO]
          Length = 451

 Score = 42.6 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 22/186 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREI- 62
           YD +VIG G  G  AA   A+ G   A++       T  +  C P    L   HL  EI 
Sbjct: 2   YDAVVIGAGPGGYVAAIKLAQRGKKVAVVEKSFVGGTCTNWGCIPTKALLSSVHLYSEIT 61

Query: 63  -----------------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
                             A+   M +    +      L  K G  +       +      
Sbjct: 62  EKGKQLGINVEKISYDFSAMKAHMNKTVMMSRKGIEYLFKKYGVELINGTATVESTSVVK 121

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
              +++    N+ +  G V       + I  I   D  + +   +  +      GVI I 
Sbjct: 122 TSDKKLE-THNIILATGSVPTLIPPFDQIPGIWTSD-DVFKMEKLPESILIVGGGVIGIE 179

Query: 166 KLKIPA 171
                +
Sbjct: 180 FATFFS 185


>gi|300787843|ref|YP_003768134.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299797357|gb|ADJ47732.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 580

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 22/156 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGKGHLV 59
           +N   DVIV+G G AG  AA + A  G  T L T      G  +  P   I       ++
Sbjct: 1   MNYDTDVIVVGSGPAGGSAALLLATYGVPTVLAT----KYGWTANTPRAHITNQRTMEVL 56

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVK-KGP-----AVRGPRTQADR--ELYRLAMQREI 111
           R++   D  +        +   VL     GP     A  G     DR    Y  A     
Sbjct: 57  RDLGVEDKALAAGTPPELMGDTVLCTSLTGPEIGRIASWGT---GDRSASEYAAAS---- 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147
                +D+ Q  +      +       ++ ++    
Sbjct: 110 -PCHMIDLPQTYLEPILVSEAAARGAKLRLDTEFLS 144


>gi|296118119|ref|ZP_06836701.1| dihydrolipoyl dehydrogenase [Corynebacterium ammoniagenes DSM
          20306]
 gi|295969005|gb|EFG82248.1| dihydrolipoyl dehydrogenase [Corynebacterium ammoniagenes DSM
          20306]
          Length = 470

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+VIG G  G  +A  AA+LG   A++
Sbjct: 1  MTNEHYDVVVIGAGPGGYVSAIRAAQLGKKVAVV 34


>gi|259501214|ref|ZP_05744116.1| fumarate reductase [Lactobacillus iners DSM 13335]
 gi|302191022|ref|ZP_07267276.1| fumarate reductase, flavoprotein subunit [Lactobacillus iners AB-1]
 gi|309805068|ref|ZP_07699121.1| flavocytochrome c [Lactobacillus iners LactinV 09V1-c]
 gi|315653270|ref|ZP_07906193.1| fumarate reductase subunit A [Lactobacillus iners ATCC 55195]
 gi|259167341|gb|EEW51836.1| fumarate reductase [Lactobacillus iners DSM 13335]
 gi|308165522|gb|EFO67752.1| flavocytochrome c [Lactobacillus iners LactinV 09V1-c]
 gi|315489433|gb|EFU79072.1| fumarate reductase subunit A [Lactobacillus iners ATCC 55195]
          Length = 459

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|209884507|ref|YP_002288364.1| FAD dependent oxidoreductase [Oligotropha carboxidovorans OM5]
 gi|209872703|gb|ACI92499.1| FAD dependent oxidoreductase [Oligotropha carboxidovorans OM5]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-----PAIGGLGKG 56
           ++R  +V V+G G AG   A  AA+ G S A++  +     +  CN     P  G     
Sbjct: 28  LDRDVEVCVVGAGLAGLTVAREAARAGMSVAVLEGRRIGWAASGCNLGSVLPGYGVPVND 87

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGP 89
            + R   A    +  +A+A G   R    +  P
Sbjct: 88  LIARVGVAHARELWMLAEAGGDYIRETIAQDAP 120


>gi|116074292|ref|ZP_01471554.1| HI0933-like protein [Synechococcus sp. RS9916]
 gi|116069597|gb|EAU75349.1| HI0933-like protein [Synechococcus sp. RS9916]
          Length = 418

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGA-STALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          NR +D+IVIGGG AG  AA  AA+ G     ++      +  +     I G G+ ++  
Sbjct: 7  NRPHDLIVIGGGPAGYMAAITAAEFGVQRVLVLEGTPEALQKVR----ISGGGRCNVTH 61


>gi|74188812|dbj|BAE39186.1| unnamed protein product [Mus musculus]
          Length = 727

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|15675685|ref|NP_269859.1| hypothetical protein SPy_1866 [Streptococcus pyogenes M1 GAS]
 gi|50914942|ref|YP_060914.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pyogenes
          MGAS10394]
 gi|56807960|ref|ZP_00365775.1| COG2081: Predicted flavoproteins [Streptococcus pyogenes M49 591]
 gi|71911397|ref|YP_282947.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus pyogenes
          MGAS5005]
 gi|139473142|ref|YP_001127857.1| hypothetical protein SpyM50266 [Streptococcus pyogenes str.
          Manfredo]
 gi|209560022|ref|YP_002286494.1| hypothetical protein Spy49_1538 [Streptococcus pyogenes NZ131]
 gi|13622900|gb|AAK34580.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|50904016|gb|AAT87731.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS10394]
 gi|71854179|gb|AAZ52202.1| NAD(FAD)-utilizing dehydrogenases [Streptococcus pyogenes
          MGAS5005]
 gi|134271388|emb|CAM29608.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
 gi|209541223|gb|ACI61799.1| Conserved hypothetical protein [Streptococcus pyogenes NZ131]
          Length = 389

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           YD I+IGGG AG  AA  ++  G  T LI         +    A  G G+ ++    +
Sbjct: 3  QYDTIIIGGGPAGMMAAISSSYYGYKTLLIEKNR----RLGKKLAGTGGGRCNVTNSGN 57


>gi|322437051|ref|YP_004219263.1| amine oxidase [Acidobacterium sp. MP5ACTX9]
 gi|321164778|gb|ADW70483.1| amine oxidase [Acidobacterium sp. MP5ACTX9]
          Length = 415

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DV+VIG G AG  A    A+ G    L+
Sbjct: 3  EFDVLVIGAGMAGLSAGRALAEAGLRVVLL 32


>gi|297625753|ref|YP_003687516.1| Alkyl hydroperoxide reductase subunit F [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921518|emb|CBL56072.1| Alkyl hydroperoxide reductase subunit F [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 566

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCN--PAIG 51
           + Y V+V+G G AG  +A   A+ G  TALI          T     + S+     P + 
Sbjct: 228 KPYQVLVVGQGPAGVASAIYLARKGTRTALIGDRFGGQVNDTLSIENVISVPHTEGPKLA 287

Query: 52  GLGKGH-LVREIDALDGL 68
              + H    EID +DG+
Sbjct: 288 SDLRTHASQYEIDMIDGV 305


>gi|228475726|ref|ZP_04060444.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis SK119]
 gi|228270508|gb|EEK11943.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis SK119]
          Length = 450

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKG 56
          ++ SYD+IVIG G  G  AA  AA+LG   A+I           +G +     +    K 
Sbjct: 1  MSESYDLIVIGAGPGGYVAAIRAAQLGKKVAVIEEFNAGGTCLNVGCIPSKTLLEHGEKA 60

Query: 57 HLVREIDALD 66
          H ++  +   
Sbjct: 61 HSIQVANDWG 70


>gi|114766814|ref|ZP_01445748.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114541008|gb|EAU44066.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Roseovarius sp. HTCC2601]
          Length = 402

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG--LGKGHLVREI 62
           V+++GGG+ G EAAAVAAKLG    L+         + +             K   +RE 
Sbjct: 146 VLIVGGGYIGLEAAAVAAKLGLKVTLVEMAERILQRVAAPETADYFRKLHTAKSVDIREG 205

Query: 63  DALDGLMGR 71
             L  L G 
Sbjct: 206 VGLGKLTGE 214


>gi|110004405|emb|CAK98743.1| hypothetical glucose inhibited protein gid n-terminal and
           c-terminal truncated [Spiroplasma citri]
          Length = 66

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 261 AIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320
           A        +GP     +E      G+R    + L  +     +    G  T L    Q 
Sbjct: 7   AKRGIKSLLFGPLKPVGLETS---SGKRPYAVVQLRQDDAIDTLYNLVGFQTNLKFPEQQ 63


>gi|49474812|ref|YP_032854.1| dihydrolipoamide dehydrogenase [Bartonella quintana str.
          Toulouse]
 gi|49240316|emb|CAF26798.1| Dihydrolipoamide dehydrogenase [Bartonella quintana str.
          Toulouse]
          Length = 468

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+VIG G  G  AA  AA+LG  TA+I
Sbjct: 2  SYDVVVIGAGPGGYVAAIKAAQLGFKTAII 31


>gi|313678228|ref|YP_004055968.1| thioredoxin-disulfide reductase [Mycoplasma bovis PG45]
 gi|312950492|gb|ADR25087.1| thioredoxin-disulfide reductase [Mycoplasma bovis PG45]
          Length = 307

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 49/154 (31%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV++IG G  G  AA  A++ G +T +I  +                GK +   E++  
Sbjct: 7   YDVVIIGAGPGGLNAALYASRSGLNTLIIEKEV-------------PGGKINSTSEVENW 53

Query: 66  DGLMG----RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            G        ++D         + K   A                               
Sbjct: 54  LGFKKISGFELSDTLYSHAMAFSAKFKSA------------------------------- 82

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            EV      K  +  +V+++  +I+  TV++ TG
Sbjct: 83  -EVVSIKHAKEFLQEVVLKNGEVIQTKTVIIATG 115


>gi|294495401|ref|YP_003541894.1| succinate dehydrogenase subunit A [Methanohalophilus mahii DSM
           5219]
 gi|292666400|gb|ADE36249.1| succinate dehydrogenase subunit A [Methanohalophilus mahii DSM
           5219]
          Length = 558

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 69/224 (30%), Gaps = 58/224 (25%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGL------ 53
            +D+IVIGGG +G  AA  A + GA  A+I+     ++ ++ +    N +IG        
Sbjct: 3   EHDIIVIGGGLSGLRAALEAKRNGADVAVISKVPPIRSHSVAAQGGINASIGPDDSWDSH 62

Query: 54  ----GKG------------------HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
                KG                   +V E++    L  R  D    Q        G A 
Sbjct: 63  AYDTVKGSDYLADQDTVEILCKEAPEIVYEMENWGTLFSRTEDGKIAQ-----RPFGGAG 117

Query: 92  RGPRTQADRELYR-LAMQREILSQENLDVIQG--------EVAGFNTEKNIISSIVM--- 139
                   R  Y        +L      V++          V    T+ N  +  V    
Sbjct: 118 ------FPRTCYAGDRTGHNLLHTMYEQVLRAGVRIYNEWMVTRLATDSNRCTGFVALNL 171

Query: 140 --QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
              +    R  ++V+ TG + R         I  G        +
Sbjct: 172 LNSELESFRAKSIVIATGGYGRIYQRSTNSIINTGFGISLAYRA 215


>gi|289756314|ref|ZP_06515692.1| LOW QUALITY PROTEIN: succinate dehydrogenase flavoprotein subunit
          [Mycobacterium tuberculosis EAS054]
 gi|289696901|gb|EFD64330.1| LOW QUALITY PROTEIN: succinate dehydrogenase flavoprotein subunit
          [Mycobacterium tuberculosis EAS054]
          Length = 646

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|289577342|ref|YP_003475969.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter italicus Ab9]
 gi|289527055|gb|ADD01407.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter italicus Ab9]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
             YDV+VIGGG AG  AA    +    T LI    
Sbjct: 5  KEYYDVVVIGGGPAGMTAAIYCGRARLKTLLIEKSL 40


>gi|219556049|ref|ZP_03535125.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T17]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|215433168|ref|ZP_03431087.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis EAS054]
          Length = 647

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|218891311|ref|YP_002440178.1| putative alkylhalidase pltM [Pseudomonas aeruginosa LESB58]
 gi|187940030|gb|ACD39164.1| halogenase pltM [Pseudomonas aeruginosa]
 gi|218771537|emb|CAW27304.1| probable alkylhalidase pltM [Pseudomonas aeruginosa LESB58]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R+YD+++IG G AG  +AA+ AK G  T ++
Sbjct: 1  MSRTYDIVIIGSGIAGSISAAILAKHGLKTLIL 33


>gi|188996617|ref|YP_001930868.1| L-aspartate oxidase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931684|gb|ACD66314.1| L-aspartate oxidase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 77/245 (31%), Gaps = 48/245 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-----GSMSCNPAIGGLGKGHLVRE 61
           D I++G G AG   A    +LG    LIT K   I            AI       L  E
Sbjct: 21  DTIIVGTGLAGISTAYYLLQLGIKPLLITKKKPGISNSFLAQGGIAAAISPEDSTELHYE 80

Query: 62  --IDALDGLMG-------------RVADAAGIQFRVLNVKKGP-------AVRGPRTQAD 99
             + A  GL               RV D   I       +KG        A    R    
Sbjct: 81  DTLKAGKGLCIERNVRLLVEEGLERVIDLINIGVNFDRDEKGFIKLTREGAHSRNRVLHS 140

Query: 100 RELYRLAMQREILSQENLDVIQGEV--------AGFNTEKNIISSIVMQDNS---MIRCS 148
           ++     + + +LS      ++ +V            T+++    I++ D +   +IR  
Sbjct: 141 KDKTGYEIGKTLLSY-----VKDKVNLADGHYLEEILTDEDRYVGIILSDGNNQKVIRSK 195

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF----DTGRLKTGTPARL 204
           ++VL TG +    +        AG        +     M  +F     T     G P  L
Sbjct: 196 SIVLATGGYSAIYLRNTSAYNVAGDTISVAYRAGCE-LMDLEFVQFHPTAIYLEGKPGWL 254

Query: 205 DGKTI 209
             + +
Sbjct: 255 ISEAV 259


>gi|169627915|ref|YP_001701564.1| glucose-methanol-choline oxidoreductase [Mycobacterium abscessus
          ATCC 19977]
 gi|169239882|emb|CAM60910.1| Probable glucose-methanol-choline oxidoreductase [Mycobacterium
          abscessus]
          Length = 502

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M+NR +DV V+GGG AGC  AA  A  G    ++     
Sbjct: 1  MLNR-FDVAVVGGGTAGCAVAARLAGSGRKVLVLEAGPD 38


>gi|124027077|ref|YP_001012397.1| thioredoxin reductase [Hyperthermus butylicus DSM 5456]
 gi|123977771|gb|ABM80052.1| Thioredoxin reductase [Hyperthermus butylicus DSM 5456]
          Length = 344

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            +DVI++G G AG  AA   A+ G    +++   
Sbjct: 18 ERHDVIIVGAGMAGLTAALYLARQGVDVLVVSRDL 52


>gi|123504310|ref|XP_001328714.1| thioredoxin reductase [Trichomonas vaginalis G3]
 gi|121911661|gb|EAY16491.1| thioredoxin reductase, putative [Trichomonas vaginalis G3]
          Length = 352

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++G G AGC AA  AA+ G +T ++
Sbjct: 47 DVIILGSGPAGCTAALYAARAGYNTVVL 74


>gi|119714841|ref|YP_921806.1| NADH:flavin oxidoreductase/NADH oxidase [Nocardioides sp. JS614]
 gi|119535502|gb|ABL80119.1| NADH:flavin oxidoreductase/NADH oxidase [Nocardioides sp. JS614]
          Length = 699

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+V+G G AG EAA   A+ GA    +      +G
Sbjct: 397 VLVVGAGPAGLEAAIGLARRGADMVHLVDSADQVG 431


>gi|126432856|ref|YP_001068547.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium sp.
          JLS]
 gi|126232656|gb|ABN96056.1| succinate dehydrogenase subunit A [Mycobacterium sp. JLS]
          Length = 648

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
            YDV+VIG G AG  A   A + G   A++       G      A GG    
Sbjct: 17 HQYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCAAS 67


>gi|37223142|gb|AAQ90171.1| putative halogenase [Pseudomonas sp. M18]
          Length = 281

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R+YD+++IG G AG  +AA+ AK G  T ++
Sbjct: 1  MSRTYDIVIIGSGIAGSISAAILAKHGLKTLIL 33


>gi|95929448|ref|ZP_01312191.1| FAD dependent oxidoreductase [Desulfuromonas acetoxidans DSM 684]
 gi|95134564|gb|EAT16220.1| FAD dependent oxidoreductase [Desulfuromonas acetoxidans DSM 684]
          Length = 538

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 27/174 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTI---GSM--SCNPAIGGL 53
           V+V+G G AG  AA   A+ G    L+                   G +    N   G  
Sbjct: 101 VVVVGMGPAGLFAALTLARCGHQVCLVERGRPVEQRVADVENFWAGGPLNPHSNVQFGEG 160

Query: 54  GKGH------LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM 107
           G G         R    L   +       G   ++L+  K P V   R +     +R  +
Sbjct: 161 GAGTFSDGKLTTRLKHPLTRTILETLVTFGAPEQILSEAK-PHVGTDRLRCVLLNFRKEL 219

Query: 108 QREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
           +R       +++     V         +  ++      + C  VVL  G   R 
Sbjct: 220 ERL-----GVELRYTCCVTDLLGTAQHVQGVIFNHQEELPCDAVVLAVGHSARD 268


>gi|330720651|gb|EGG98902.1| Oxidoreductase [gamma proteobacterium IMCC2047]
          Length = 445

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVRE 61
           ++ DV +IGGG  G  AA   AK G    +        G+ + N    G G  K  + + 
Sbjct: 35  KNIDVAIIGGGFTGISAALTLAKAGKKAVIFDQGPIGFGASTRNGGQIGSGNQKIPIGQL 94

Query: 62  IDALDGLMGRVADAAGIQF 80
            +       +V    G+Q 
Sbjct: 95  ENRFGAAKAKVLLNEGVQM 113


>gi|310643782|ref|YP_003948540.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus polymyxa SC2]
 gi|309248732|gb|ADO58299.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus polymyxa SC2]
          Length = 581

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          ++IV+GGG AG  A   AA+ G    L +          C    G  G  +   E D
Sbjct: 5  NIIVVGGGLAGLMATIKAAEAGVHVHLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|310658754|ref|YP_003936475.1| hypothetical protein CLOST_1450 [Clostridium sticklandii DSM 519]
 gi|308825532|emb|CBH21570.1| conserved exported protein of unknown function [Clostridium
           sticklandii]
          Length = 397

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 129/394 (32%), Gaps = 64/394 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV-------- 59
           +++IG G +G  AA  A+K  +S  L          +     I G G+ ++         
Sbjct: 4   IVIIGAGPSGMMAALYASKQSSSVTL----LDKNKILGKKLLITGGGRCNITSNLPLSDF 59

Query: 60  ------REIDALDGLMGRVADAAGIQFR---VLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                  E            D     F+   V    +G  +     +AD  L   ++  +
Sbjct: 60  YSHITSNEKFLYSSFNFFGKDELLEMFKSEGVKFKSEGQKIYPVSNRADEIL---SVLEK 116

Query: 111 ILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           +L +  +D+   E V+    + + +  +    N       VV+ +G              
Sbjct: 117 LLIESKVDIKLNEDVSDIIIQDSKVLGVKTDKNL-YTSDCVVVCSG----------GCSY 165

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFM 229
           P           LF+   K    T  L    PA +  KT +         D+ ++  S  
Sbjct: 166 P----LTGSDGKLFSILKKLGIKTTEL---YPALVPLKTSMTSNLAGISLDDVILT-SKH 217

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGER 288
             K+ + +     T   +    ++  +   S+    DI  +       S +       E+
Sbjct: 218 GKKLYSTRGSMIFTHNGISGPAVLDLSSYISSYKLSDISLFIDFLPDISSDKITDILYEK 277

Query: 289 NGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIR--------TIPGLE--KVNIIRPG 338
           +   ++   +G     +    I T LP+    +            +  L+   V +   G
Sbjct: 278 SKKNLYNRFKGYLPTEL----IKTILPDIDADKIFNLKKAQANELVGNLKSYNVEVTGFG 333

Query: 339 YAIEYDY----INPKELFP-TLETKKISGLFLAG 367
              E       ++ K++ P TLE++ + GL+ AG
Sbjct: 334 KLSEGIVTKGGVDLKKVNPSTLESRIVKGLYFAG 367


>gi|308070598|ref|YP_003872203.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus
          polymyxa E681]
 gi|305859877|gb|ADM71665.1| Succinate dehydrogenase flavoprotein subunit [Paenibacillus
          polymyxa E681]
          Length = 581

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          ++IV+GGG AG  A   AA+ G    L +          C    G  G  +   E D
Sbjct: 5  NIIVVGGGLAGLMATIKAAEAGVHVHLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|108797233|ref|YP_637430.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium sp.
          MCS]
 gi|119866318|ref|YP_936270.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium sp.
          KMS]
 gi|108767652|gb|ABG06374.1| succinate dehydrogenase subunit A [Mycobacterium sp. MCS]
 gi|119692407|gb|ABL89480.1| succinate dehydrogenase subunit A [Mycobacterium sp. KMS]
          Length = 648

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
            YDV+VIG G AG  A   A + G   A++       G      A GG    
Sbjct: 17 HQYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCAAS 67


>gi|329889707|ref|ZP_08268050.1| mercuric reductase [Brevundimonas diminuta ATCC 11568]
 gi|328845008|gb|EGF94572.1| mercuric reductase [Brevundimonas diminuta ATCC 11568]
          Length = 476

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHL 58
            +YD++VIG G AG  AA  AA+ GA  AL+   T       IG +     I  +   H 
Sbjct: 13  ETYDLVVIGAGSAGFSAAITAAEEGARVALVGAGTIGGTCVNIGCVPSKALIRAVEPLHQ 72

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            R     DG+  R          V+  K          Q    L +   +  +   + + 
Sbjct: 73  ARAASRFDGV--RATAEISAWSEVIRQKD---------QLVNALRQAKYEDVLQGYDAIA 121

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRC 147
             +G  A        +  + +  + +I  
Sbjct: 122 YHEG-AARLVLGGVEVGDVRLTTDKVIIA 149


>gi|327460392|gb|EGF06729.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1057]
          Length = 461

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 19  YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 78

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   +   ++        L           ++ I
Sbjct: 79  EARRYG----IESKLERIDFEKLVDRKNQVIASLQSGIHASFKSL----------GIEYI 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           QG+          +      +   I    V+L TG++
Sbjct: 125 QGQAKFVKDRTFSV------NGKEISGKDVILATGSY 155


>gi|317049956|ref|YP_004117604.1| hypothetical protein Pat9b_3758 [Pantoea sp. At-9b]
 gi|316951573|gb|ADU71048.1| HI0933 family protein [Pantoea sp. At-9b]
          Length = 396

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DVI++G G AG   AA A + G    L                + G G+ +
Sbjct: 2  EKFDVIIVGAGAAGMFCAAQAGQRGLRVLL----LDNGKKAGRKILMSGGGRCN 51


>gi|315658881|ref|ZP_07911748.1| thioredoxin-disulfide reductase [Staphylococcus lugdunensis
          M23590]
 gi|315496005|gb|EFU84333.1| thioredoxin-disulfide reductase [Staphylococcus lugdunensis
          M23590]
          Length = 322

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   +YDV +IG G AG  AA  A++   ST +I
Sbjct: 11 MTEVNYDVAIIGAGPAGMTAAVYASRANLSTVMI 44


>gi|291619316|ref|YP_003522058.1| YhiN [Pantoea ananatis LMG 20103]
 gi|291154346|gb|ADD78930.1| YhiN [Pantoea ananatis LMG 20103]
          Length = 394

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVIVIG G AG   AA A + G    L+
Sbjct: 2  EQFDVIVIGAGAAGLFCAAQAGQRGRRVLLL 32


>gi|289551374|ref|YP_003472278.1| Thioredoxin reductase [Staphylococcus lugdunensis HKU09-01]
 gi|289180905|gb|ADC88150.1| Thioredoxin reductase [Staphylococcus lugdunensis HKU09-01]
          Length = 312

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   +YDV +IG G AG  AA  A++   ST +I
Sbjct: 1  MTEVNYDVAIIGAGPAGMTAAVYASRANLSTVMI 34


>gi|228908584|ref|ZP_04072423.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228851049|gb|EEM95864.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228921508|ref|ZP_04084830.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228838127|gb|EEM83446.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228939956|ref|ZP_04102531.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228819706|gb|EEM65756.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326940611|gb|AEA16507.1| sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228953173|ref|ZP_04115229.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228806498|gb|EEM53061.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228959069|ref|ZP_04120769.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228800578|gb|EEM47495.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228965782|ref|ZP_04126858.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228793906|gb|EEM41433.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|228985933|ref|ZP_04146080.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228773789|gb|EEM22208.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229046537|ref|ZP_04192190.1| Sarcosine oxidase alpha subunit [Bacillus cereus AH676]
 gi|228724801|gb|EEL76105.1| Sarcosine oxidase alpha subunit [Bacillus cereus AH676]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229070315|ref|ZP_04203563.1| Sarcosine oxidase alpha subunit [Bacillus cereus F65185]
 gi|228712798|gb|EEL64725.1| Sarcosine oxidase alpha subunit [Bacillus cereus F65185]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229080028|ref|ZP_04212558.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock4-2]
 gi|228703286|gb|EEL55742.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock4-2]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229110289|ref|ZP_04239862.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock1-15]
 gi|228673154|gb|EEL28425.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock1-15]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229145415|ref|ZP_04273802.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296503374|ref|YP_003665074.1| sarcosine oxidase subunit alpha [Bacillus thuringiensis BMB171]
 gi|228638042|gb|EEK94485.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296324426|gb|ADH07354.1| sarcosine oxidase alpha subunit [Bacillus thuringiensis BMB171]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229151048|ref|ZP_04279258.1| Sarcosine oxidase alpha subunit [Bacillus cereus m1550]
 gi|228632425|gb|EEK89044.1| Sarcosine oxidase alpha subunit [Bacillus cereus m1550]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229179123|ref|ZP_04306479.1| Sarcosine oxidase alpha subunit [Bacillus cereus 172560W]
 gi|228604341|gb|EEK61806.1| Sarcosine oxidase alpha subunit [Bacillus cereus 172560W]
          Length = 414

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|229190936|ref|ZP_04317927.1| Sarcosine oxidase alpha subunit [Bacillus cereus ATCC 10876]
 gi|228592604|gb|EEK50432.1| Sarcosine oxidase alpha subunit [Bacillus cereus ATCC 10876]
          Length = 414

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|218897864|ref|YP_002446275.1| putative sarcosine oxidase, alpha subunit [Bacillus cereus G9842]
 gi|218544999|gb|ACK97393.1| putative sarcosine oxidase, alpha subunit [Bacillus cereus G9842]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|218232166|ref|YP_002367559.1| sarcosine oxidase alpha subunit [Bacillus cereus B4264]
 gi|218160123|gb|ACK60115.1| sarcosine oxidase alpha subunit [Bacillus cereus B4264]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|206971837|ref|ZP_03232786.1| sarcosine oxidase alpha subunit [Bacillus cereus AH1134]
 gi|206733222|gb|EDZ50395.1| sarcosine oxidase alpha subunit [Bacillus cereus AH1134]
          Length = 414

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|146275657|ref|YP_001165817.1| amine oxidase [Novosphingobium aromaticivorans DSM 12444]
 gi|145322348|gb|ABP64291.1| amine oxidase [Novosphingobium aromaticivorans DSM 12444]
          Length = 529

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           YD++V+G GH G  AAA  AK G    ++             P  GG   G   RE+
Sbjct: 3  QYDIVVMGAGHNGLTAAAYMAKAGKKVLVLE----------RKPHFGG---GVSTREL 47


>gi|91790211|ref|YP_551163.1| FAD dependent oxidoreductase [Polaromonas sp. JS666]
 gi|91699436|gb|ABE46265.1| FAD dependent oxidoreductase [Polaromonas sp. JS666]
          Length = 383

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N + DVIVIGGG  G   A   A+ GA   L+
Sbjct: 8  NNNSDVIVIGGGLVGSAVAYGLARQGAQVTLL 39


>gi|30020959|ref|NP_832590.1| sarcosine oxidase alpha subunit [Bacillus cereus ATCC 14579]
 gi|229128181|ref|ZP_04257162.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|29896512|gb|AAP09791.1| Sarcosine oxidase alpha subunit [Bacillus cereus ATCC 14579]
 gi|228655040|gb|EEL10897.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|89897888|ref|YP_514998.1| dihydrolipoamide dehydrogenase [Chlamydophila felis Fe/C-56]
 gi|89331260|dbj|BAE80853.1| dihydrolipoamide dehydrogenase [Chlamydophila felis Fe/C-56]
          Length = 462

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           ++  +D +VIG G  G  AA  +A+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MSTDFDCVVIGAGPGGYVAAITSAQQGLKTALIEEQQAGGTCLNRGCIPSKALLVGSGIV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I       G   D   + +  +  +K   V G R   +  +              + V
Sbjct: 61  SQIKHAK-QFGINVDGYSVDYPAMVQRKNTVVNGIRQGLEGLIRSNK----------ITV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
             G+ +  ++ +  +     QD ++I+   +++ TG+  R
Sbjct: 110 FNGQGSLISSTEVRVKG---QDTTVIKAKQIIIATGSESR 146


>gi|15615654|ref|NP_243958.1| succinate dehydrogenase flavoprotein subunit [Bacillus halodurans
           C-125]
 gi|10175714|dbj|BAB06811.1| succinate dehydrogenase flavoprotein subunit [Bacillus halodurans
           C-125]
          Length = 589

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 108/627 (17%), Positives = 178/627 (28%), Gaps = 124/627 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           VIV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   VIVVGGGLAGLMATIKVAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTAEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG 155
                    +   +  Q    V + E +G  T  E     S ++ D  + R  T      
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRHETSGLVTKYEGWEFISAIIDDEGICRGITAQNLKT 181

Query: 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215
           +  +       +    G       +   NS +   +   +L        +G+ I    T 
Sbjct: 182 SEFQSFSADAVIMATGGPGIIFGKS--TNSVINTGYAAAKLYEQGVYYANGEFIQIHPTA 239

Query: 216 KQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYC 275
               D++L   S        R      T  + +    + E                P Y 
Sbjct: 240 I-PGDDKLRLMSESARGEGGRVW----TYKDGKPWYFLEEKY--------------PAYG 280

Query: 276 PSIEDKIVRFGERNGHQIFLEPEGLNT-DVVYPNGISTALPEEIQHQFIRTIPGLEK--- 331
             +   I        H       G+N  ++VY + +S   P+E+  +    I   EK   
Sbjct: 281 NLVPRDIAT--REIFHVCVDLKLGINGENMVYLD-LSHKDPKELDIKLGGIIEIYEKFMG 337

Query: 332 ------------VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG-----Q--IN-- 370
                             G      +I+  ++        I GLF AG     Q   N  
Sbjct: 338 DDPRKVPMKIFPAVHYSMGGM----WIDYDQMT------NIPGLFAAGECDYSQHGANRL 387

Query: 371 GTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDS------------------YIGVMI 412
           G      A   G+VAG  +    N L+    S   S                    G   
Sbjct: 388 GANSLLSAIFGGMVAGPKAVEYMNGLEKSAESMPSSLFEGELKKEQEKFDDILKMDGKEN 447

Query: 413 DDLTSKGVLEPYRMFTSRAEYR-ISLRPDNADNRLTPIGMKLGCIGERRQK-RFAKYIQE 470
             +  K + E      +   Y    L+ D     L      +      +   + A + ++
Sbjct: 448 AYVLHKELGEWMTDNVTVVRYNDKLLKTDEKIQELMERYKNIDINDTAKWSNQGASFTRQ 507

Query: 471 YNFLRSLLKSLVLTS-KNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPD--ARK 527
            + +  L + + L +     S    +K D   R   EFL              P+  A +
Sbjct: 508 LDGMLKLARVITLGAYNRNESRGAHYKPDFPERNDEEFLKTTK------AKFNPETLAPE 561

Query: 528 FSSLVIERLQIESSYAAYTGRQMIEAK 554
           F    ++   IE     Y+ ++    K
Sbjct: 562 FEYEEVDVSLIEPRKRDYSQKKQGAVK 588


>gi|313886645|ref|ZP_07820356.1| dihydrolipoyl dehydrogenase [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|312923887|gb|EFR34685.1| dihydrolipoyl dehydrogenase [Porphyromonas asaccharolytica
          PR426713P-I]
          Length = 456

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD+I+IGGG AG  AA  AA+ G  T LI
Sbjct: 2  TYDLIIIGGGPAGYTAAERAARGGLQTLLI 31


>gi|242064118|ref|XP_002453348.1| hypothetical protein SORBIDRAFT_04g004300 [Sorghum bicolor]
 gi|241933179|gb|EES06324.1| hypothetical protein SORBIDRAFT_04g004300 [Sorghum bicolor]
          Length = 586

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +D +VIGGGH G  AAA  A+ G S A++
Sbjct: 38 DKRWDAVVIGGGHNGLVAAAYLARAGRSVAVL 69


>gi|168058650|ref|XP_001781320.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667213|gb|EDQ53848.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 10/152 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D I++G G AG   A    K G    ++         I      P     +  LG    +
Sbjct: 40  DAIIVGAGVAGSALACTLGKDGRRVLVLERDLSEPDRIVGELLQPGGYLKLLELGLKDCL 99

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             IDA   ++G      G   +V    +G              + + M+ +  S   + +
Sbjct: 100 EGIDAQ-RVVGYALFKEGRDAKVGYPLEGYGDDIAGRSFHNGRFIMKMREKAASIPQVKL 158

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRCST 149
            Q  V G    + +++ +     D        
Sbjct: 159 EQATVLGLIENEGVVTGVRYRTPDGQEQEAKA 190


>gi|123966692|ref|YP_001011773.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
           9515]
 gi|123201058|gb|ABM72666.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 479

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 31/167 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           +N  +D+IVIG G+ G +AA  AA  G   A++       G+     C P+   L     
Sbjct: 4   LNFDFDLIVIGAGYGGFDAAKHAAGKGLKVAIVE-SGDMGGTCVNKGCVPSKALLAASGK 62

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENL 117
           VREI                 +  L+      +     + +R          + + +ENL
Sbjct: 63  VREI---------------ANYEHLSR---FGIHASPVRFERSKIADHANNLVSNVRENL 104

Query: 118 --DVIQGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGT 156
              + +  V         E N    +  ++    +  C   V+ +G+
Sbjct: 105 TKTLKRSGVEIILGFGRLEGNQKVGVRDKNGIDKIFTCKNTVIASGS 151


>gi|11497890|ref|NP_069112.1| sarcosine oxidase, subunit beta (soxB) [Archaeoglobus fulgidus
          DSM 4304]
 gi|2650362|gb|AAB90958.1| sarcosine oxidase, subunit beta (soxB) [Archaeoglobus fulgidus
          DSM 4304]
          Length = 354

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          V VIGGG AG  AA   AK GA   +   K    G+   N
Sbjct: 3  VAVIGGGVAGLSAAYFLAKAGADVKVFEQKYLLYGASGRN 42


>gi|332300548|ref|YP_004442469.1| dihydrolipoamide dehydrogenase [Porphyromonas asaccharolytica DSM
          20707]
 gi|332177611|gb|AEE13301.1| dihydrolipoamide dehydrogenase [Porphyromonas asaccharolytica DSM
          20707]
          Length = 457

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD+I+IGGG AG  AA  AA+ G  T LI
Sbjct: 2  TYDLIIIGGGPAGYTAAERAARGGLQTLLI 31


>gi|284047576|ref|YP_003397915.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidaminococcus fermentans DSM 20731]
 gi|283951797|gb|ADB46600.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidaminococcus fermentans DSM 20731]
          Length = 285

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+ ++GGG AGC AA  AA     T L+
Sbjct: 3  YDIAIVGGGPAGCSAAVTAANRSLGTLLL 31


>gi|257056751|ref|YP_003134583.1| succinate dehydrogenase flavoprotein subunit [Saccharomonospora
          viridis DSM 43017]
 gi|256586623|gb|ACU97756.1| succinate dehydrogenase subunit A [Saccharomonospora viridis DSM
          43017]
          Length = 638

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           SYDV+VIG G AG  A   A + G S A+++      G       +   G    +  ++
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARQRGLSVAVVSKSL--FGKAHT--VMAEGGCAASMGNVN 62

Query: 64 ALDGLMGRVAD 74
            DG      D
Sbjct: 63 PNDGWQVHFRD 73


>gi|167855943|ref|ZP_02478691.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Haemophilus parasuis 29755]
 gi|167852937|gb|EDS24203.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Haemophilus parasuis 29755]
          Length = 390

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 15/163 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT----STIGSMSCNPAIGGLGKGHLVREI 62
           DVIV+GGG  G   A   AKLG    LI                  +   +    L+ ++
Sbjct: 5   DVIVMGGGMVGAATALGLAKLGLKVVLIEKNPLPTFDPNAPYDVRISAISVASVALLEKL 64

Query: 63  DALDG-LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA-------MQREILSQ 114
            A       RV    G++   ++     A        D+  Y +        + + +   
Sbjct: 65  GAWQAIESMRVCPYDGLETWEID-GFNTAFHANDLGLDKLGYMVENNLIQLGLWQALAQY 123

Query: 115 ENL-DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            N    +  E    N ++N +  + + D  +     ++   G 
Sbjct: 124 PNCQQAVGFEQISANRDENGVWMVEL-DQQVFSAPLLIACDGA 165


>gi|149913123|ref|ZP_01901657.1| dihydrolipoamide dehydrogenase [Roseobacter sp. AzwK-3b]
 gi|149813529|gb|EDM73355.1| dihydrolipoamide dehydrogenase [Roseobacter sp. AzwK-3b]
          Length = 462

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVRE 61
          +YDVIVIG G  G  AA   A+LG  TA +  + +  G+   + C P+   L   H + E
Sbjct: 3  NYDVIVIGSGPGGYVAAIRCAQLGLKTACVEGRATLGGTCLNVGCIPSKALLHASHQLHE 62

Query: 62 ID---ALDGLMG 70
           +   A  GL G
Sbjct: 63 AEHNFAKMGLKG 74


>gi|122890376|emb|CAL34102.1| putative monooxygenase [Streptomyces cinnamonensis]
          Length = 516

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD-- 66
           +VIG G AG  AA   A       +I       G+      +      H +         
Sbjct: 18  VVIGSGFAGLTAARALANSVDRVTVIERDPLPPGAARRR-GLAQARHTHTLTTAAQQGLE 76

Query: 67  ----GLMGRVADAAGIQFRVLNVK--KGPAVRGPR-------TQADRELYRLAMQREILS 113
               G+ G +  A  ++ R+       GPA   PR         A R+L    ++  + +
Sbjct: 77  QLFPGIGGDLRRAGAVEVRLPKDALVLGPAGWLPRFTSGLTMLSAGRDLIDAVLRERLRT 136

Query: 114 QENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +  +  + G EV   + ++N            +R        G     +I    +   +G
Sbjct: 137 EPGVHFLPGHEVLALHPDRND-----TVTGVWVRARNRHRPGGWDAERLIPADFVVDASG 191

Query: 173 RMGDSP 178
           R   +P
Sbjct: 192 RHSRAP 197


>gi|114764577|ref|ZP_01443781.1| dihydrolipoamide dehydrogenase [Pelagibaca bermudensis HTCC2601]
 gi|114542953|gb|EAU45973.1| dihydrolipoamide dehydrogenase [Roseovarius sp. HTCC2601]
          Length = 464

 Score = 42.6 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M ++S+D+IVIG G  G  AA   A+LG   A +      +G +     C P    L   
Sbjct: 1   MASQSFDMIVIGAGPGGYVAAIRGAQLGLKVACVE--REHMGGICLNWGCIPTKALLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            +   +       G  A+  G     V+   +G A +              +   +   +
Sbjct: 59  EIFHYMHRAKEY-GLSAEKIGFDLDAVVKRSRGVAKQLNSG----------VTHLLKKNK 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
              +         T K  +S +  +  +  +    +V+ TG   R +
Sbjct: 108 VTSI---MGDATITAKGKVS-VKTEKGTEELTAKNIVVATGARAREL 150


>gi|225027820|ref|ZP_03717012.1| hypothetical protein EUBHAL_02080 [Eubacterium hallii DSM 3353]
 gi|224954870|gb|EEG36079.1| hypothetical protein EUBHAL_02080 [Eubacterium hallii DSM 3353]
          Length = 306

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V++IG GH G       A  G +  ++        + +    I         RE    DG
Sbjct: 6   VVIIGAGHVGSHCGYALAHSGIAGEIVLVDVDKDKAHAQALDIADSVSFC-ERETVVRDG 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
                 DAA +   +     G A +  +T+ D     + M +E+L Q     I G V   
Sbjct: 65  DYKDCEDAALVVVAI-----GEARKPGQTRLDMLGRSVEMLKELLEQLKPYKIPGIVVTI 119

Query: 128 NTEKNIISS-IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               +I++  +             V  TGT L     I  L   +G
Sbjct: 120 TNPADIVADYVRKGLGLE---RNRVFGTGTLLDTARLIRTLSEESG 162


>gi|210633092|ref|ZP_03297659.1| hypothetical protein COLSTE_01567 [Collinsella stercoris DSM
          13279]
 gi|210159246|gb|EEA90217.1| hypothetical protein COLSTE_01567 [Collinsella stercoris DSM
          13279]
          Length = 311

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +D+IVIGGG AG  AA  AA+      ++ H
Sbjct: 1  MATKHDLIVIGGGPAGYSAALYAARASLDVLVLEH 35


>gi|124025001|ref|YP_001014117.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. NATL1A]
 gi|123960069|gb|ABM74852.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. NATL1A]
          Length = 318

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          M     DV+++GGG AGC  A   ++    T ++      +G+++    I  
Sbjct: 1  METIETDVVIVGGGPAGCSCALYTSRADLRTVILDKNPD-VGALAITHQIAN 51


>gi|86749883|ref|YP_486379.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris HaA2]
 gi|86572911|gb|ABD07468.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris HaA2]
          Length = 473

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MTDTSFDVIIIGSGPGGYVAAIRAAQLGFKTAIV 34


>gi|72383414|ref|YP_292769.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Prochlorococcus marinus str. NATL2A]
 gi|72003264|gb|AAZ59066.1| thioredoxin-disulfide reductase [Prochlorococcus marinus str.
          NATL2A]
          Length = 318

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          M     DV+++GGG AGC  A   ++    T ++      +G+++    I  
Sbjct: 1  METIETDVVIVGGGPAGCSCALYTSRADLRTVILDKNPD-VGALAITHQIAN 51


>gi|70727126|ref|YP_254040.1| thioredoxine reductase [Staphylococcus haemolyticus JCSC1435]
 gi|68447850|dbj|BAE05434.1| thioredoxine reductase [Staphylococcus haemolyticus JCSC1435]
          Length = 313

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   +YDV +IG G AG  AA  A++   ST +I
Sbjct: 1  MTEVNYDVAIIGAGPAGMTAAVYASRANLSTVMI 34


>gi|319937774|ref|ZP_08012177.1| thioredoxin reductase [Coprobacillus sp. 29_1]
 gi|319807209|gb|EFW03823.1| thioredoxin reductase [Coprobacillus sp. 29_1]
          Length = 300

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D+IVIG G +G  AA  A + GAS  ++                   GK +L  EI+   
Sbjct: 3  DLIVIGAGPSGLTAALYATRAGASVIVL-------------DGGAPGGKLNLTAEIENYP 49

Query: 67 GLMGRVADAAGIQFR 81
          G+M +  + A   + 
Sbjct: 50 GMMKKGPELAYSMYE 64


>gi|319943657|ref|ZP_08017938.1| dihydrolipoyl dehydrogenase [Lautropia mirabilis ATCC 51599]
 gi|319742890|gb|EFV95296.1| dihydrolipoyl dehydrogenase [Lautropia mirabilis ATCC 51599]
          Length = 483

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSM-------SCNPAIGG 52
           ++  +DV+VIG G  G  AA  AA+LG   A I      +   ++        C P+   
Sbjct: 1   MSLEFDVVVIGAGPGGYIAAIRAAQLGLKVACIEKWKNPAGKNALGGTCLNVGCIPSKAL 60

Query: 53  LGKGHLVREI-DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           L            L+G    V D +    ++L+ K   A+    TQ    L+R      +
Sbjct: 61  LASSESYEHAKHGLEGHGITVKDVSIDIRKMLDRKD--AIVSKMTQGIEFLFRKNKITWL 118

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                    +GE      + +           +I+   V++ TG+  R
Sbjct: 119 KGHGRFIGREGEAVRLELQPDEGEY------EIIQARNVIIATGSKAR 160


>gi|262378379|ref|ZP_06071536.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SH164]
 gi|262299664|gb|EEY87576.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SH164]
          Length = 466

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M    YD+IV+G G  G  AA  AA+LG +TA+I  K
Sbjct: 1  MTGNQYDLIVVGAGPGGYVAAIRAAQLGLNTAIIEEK 37


>gi|255320486|ref|ZP_05361667.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SK82]
 gi|255302458|gb|EET81694.1| dihydrolipoyl dehydrogenase [Acinetobacter radioresistens SK82]
          Length = 466

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M    YD+IV+G G  G  AA  AA+LG +TA+I  K
Sbjct: 1  MTGNQYDLIVVGAGPGGYVAAIRAAQLGLNTAIIEEK 37


>gi|229593178|ref|YP_002875297.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
 gi|229365044|emb|CAY53222.1| putative oxidoreductase [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHL 58
           +    D+++IG G  G   A  AAK G    +     + +G+   N     + G   G +
Sbjct: 1   MTHHSDLLIIGAGILGLSHAYAAAKRGLKVKVFERSATPLGASVRNFGQALVTGQPPGPM 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE--- 115
           +        + G+ A+ AG+Q +     +  A    RT+A  E + L       +QE   
Sbjct: 61  LDLARESRAIWGQWAERAGLQLK-----RNGAYLFARTEA--EEHLLEAFCAGRAQEHGY 113

Query: 116 NLDVIQGEV 124
           N+D++QG  
Sbjct: 114 NVDLLQGAA 122


>gi|225869235|ref|YP_002745183.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702511|emb|CAX00442.1| putative membrane protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 389

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          YD I+IGGG AG  AA  ++  G  T L          +    A  G G+ ++     
Sbjct: 4  YDTIIIGGGPAGMMAAISSSYYGYKTLL----LDKNRRLGKKLAGTGGGRCNVTNSGS 57


>gi|56403968|dbj|BAD77802.1| dye-linked L-proline dehydrogenase alpha2 subunit [Pyrococcus
           horikoshii OT3]
          Length = 479

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 41/154 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV+GGG AG  AA  A+  GA   L          +  +P +G    G LV++     
Sbjct: 119 DIIVVGGGPAGMMAAISASDTGAKVIL----------IDESPMLG----GQLVKQTHKFF 164

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVA 125
           G           QF  +   K                   ++REI  +EN+   ++    
Sbjct: 165 GK--------RDQFAGIRGIKI---------------AEILRREIEKRENIKAYLRTSAV 201

Query: 126 GF--NTEKNIISSIVMQDN-SMIRCSTVVLTTGT 156
           G   + E+ ++  +  ++     +   V++ TG 
Sbjct: 202 GIFQDGEEKLVIGVRKENELIEFKGKAVIVATGA 235


>gi|159902772|ref|YP_001550116.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159887948|gb|ABX08162.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 318

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 42/171 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     DV+++GGG AGC  A   ++    T +          +  NP++G L   H + 
Sbjct: 1   METIETDVVIVGGGPAGCSCALYTSRADLKTVI----------LDKNPSVGALAITHQIA 50

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                    G   D +G     L           R QA               Q   D  
Sbjct: 51  ------NYPGVPTDISGDDLLTL----------MRDQAI--------------QYGTDYR 80

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           + +V G +       ++   +    +   +VL +G   R     G+     
Sbjct: 81  RAQVFGVDVNGEW-KTVFTPEG-TFKAKALVLASGAMGRPASFKGEADFLG 129


>gi|77408804|ref|ZP_00785533.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
 gi|77172585|gb|EAO75725.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
          Length = 117

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + YD I+IGGG AG  AA  +   G  T LI   
Sbjct: 2  KHYDTIIIGGGPAGMMAAISSNFYGNKTLLIEKN 35


>gi|47567654|ref|ZP_00238364.1| sarcosine oxidase, subunit alpha, putative [Bacillus cereus
          G9241]
 gi|47555631|gb|EAL13972.1| sarcosine oxidase, subunit alpha, putative [Bacillus cereus
          G9241]
          Length = 411

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G    +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLKVLVI 30


>gi|312876458|ref|ZP_07736442.1| FAD dependent oxidoreductase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796816|gb|EFR13161.1| FAD dependent oxidoreductase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 462

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 80/481 (16%), Positives = 143/481 (29%), Gaps = 110/481 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAA------VAAK-----------------------LGASTA 32
           ++  YDVI++G G  G            AAK                        G    
Sbjct: 1   MSTVYDVIIVGAGPCGIFTTYELVKTSSAAKVVIFEKGRDIESRECPKRVTNVCSGCKPC 60

Query: 33  LITHKTSTIGS-----MSCNPAIGGL-----GKGHLVREIDALDGLMGRV---ADAAGIQ 79
            IT   S  G+     +S +P +GG      G+   V  I  +D +           G  
Sbjct: 61  NITTGFSGAGAFSDGKLSLSPNVGGRIQEFVGQSKAVELIKYVDSIYLENGADTKVYGTN 120

Query: 80  FRVLNVKKGPAVRGPRTQAD-----------RELYRLAMQREILSQENLDV-IQGEVAGF 127
            +V+   K  A        +           +++Y+      + +  N+++  +  V   
Sbjct: 121 SQVIEEIKRKATVANLMLVESPIRHLGTEEAKKIYKRLQDFLLSN--NIEIKFKTPVKDL 178

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E    + +V +D S+ R   VV+  G    G   + K+        ++    +     
Sbjct: 179 IVEDGKAAGVVAEDGSIYRAKNVVICVG--REGASWLSKIIEKYNIPCENNRVDIGVRVE 236

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT------DKITNRQIECG 241
                    K  T    + K I + KT     D+++  F          +   N  +  G
Sbjct: 237 T---PNHIWKGITEHLYESKFIYYTKT----FDDKVRTFCMNPGGYVAVEHYDNLAVVNG 289

Query: 242 ITRTNLE---------THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQ 292
            +  N++           +   +  K S  Y   I              + R+G+     
Sbjct: 290 HSYKNIKSDNTNFALLVSKHFTDPFKDSIKYGKYIAELANMLSGGK-VLVQRYGD----- 343

Query: 293 IFLEPEGLNTDVVYPNG--------------ISTALPEEIQHQFIRTIPGLEK-----VN 333
            F+   G  ++                    +S  LP  I       I  L+       +
Sbjct: 344 -FIR--GRRSNEERIKRNSVVPTLTDAVAGDLSLVLPYRIMLDIKEMIEALDYVVQGVAS 400

Query: 334 IIRPGYAIE-YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSAR 391
                Y +E   Y N  ++    E   I  L+  G   G T G  +A+  G++     A 
Sbjct: 401 FDTLLYGVEVKFYSNEVKVKNNFECLTIQNLYFGGDGAGITRGLMQASVNGVLIAREIAS 460

Query: 392 K 392
           K
Sbjct: 461 K 461


>gi|301060488|ref|ZP_07201333.1| putative NADH oxidase [delta proteobacterium NaphS2]
 gi|300445402|gb|EFK09322.1| putative NADH oxidase [delta proteobacterium NaphS2]
          Length = 622

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  +V+VIGGG AG EAA V+A  G +  L+
Sbjct: 361 QEKNVVVIGGGPAGMEAAIVSAMRGHNVNLL 391


>gi|257388253|ref|YP_003178026.1| FAD dependent oxidoreductase [Halomicrobium mukohataei DSM 12286]
 gi|257170560|gb|ACV48319.1| FAD dependent oxidoreductase [Halomicrobium mukohataei DSM 12286]
          Length = 410

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 81/307 (26%), Gaps = 67/307 (21%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           +  +YDV+V G G AG + A   A  G    ++  +T+       + + GG     +   
Sbjct: 1   MRDNYDVVVAGAGPAGAQCARDLADRGYDVVVLETETAEEFPARSDKSTGGTFASMMTAF 60

Query: 61  ------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR---GPRTQADRELYRLAMQREI 111
                  + A D ++    +   ++ +   V   PA +       +A    YR       
Sbjct: 61  GIPDDVVMHATDAVVLESPNDHFVRDQPGFVLDFPAFKQFLVDDGRAKGAEYR------- 113

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                       V     E   +  +           ++  +T          GV+ + +
Sbjct: 114 --------FDARVRDPIVEDGSVVGVRYNGAETVYGDIVVDATGPAAPLATELGVVDLER 165

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226
                G         L                                     D    P 
Sbjct: 166 RNHAIGIEHQFEGVELD---------------------HPDYADLSDAMMLRLDHDFAPG 204

Query: 227 SFMTDKITNRQIECGITRTNLETHRI---IMENIKHSAIYSGDIKSYGPRYCPSIEDKIV 283
            +             I  T  +T ++    ++N ++ A  S D    G  Y     D   
Sbjct: 205 GYS-----------WIFHTGGDTAKVGVCYIQNEQYRAHASDDRTVDG--YLDHWLDSDP 251

Query: 284 RFGERNG 290
           RF + + 
Sbjct: 252 RFADASR 258


>gi|225574197|ref|ZP_03782807.1| hypothetical protein RUMHYD_02261 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038565|gb|EEG48811.1| hypothetical protein RUMHYD_02261 [Blautia hydrogenotrophica DSM
           10507]
          Length = 657

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+V GGG AG EAA  AAK G    L+  KT  +G
Sbjct: 401 VLVAGGGPAGMEAAITAAKRGHDVTLVE-KTDRLG 434


>gi|156082770|ref|XP_001608869.1| thiodoxin reductase [Babesia bovis T2Bo]
 gi|154796119|gb|EDO05301.1| thiodoxin reductase, putative [Babesia bovis]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+ VIGGG +G  AA  AA+LGA T L 
Sbjct: 69 YDLAVIGGGCSGLAAAKEAARLGAKTVLF 97


>gi|120402003|ref|YP_951832.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
 gi|119954821|gb|ABM11826.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
          Length = 528

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           YD I+IG GH G  AA V  + G  T L+   T
Sbjct: 3  DYDAIIIGAGHNGLTAATVLQRAGLRTVLLEANT 36


>gi|1196928|gb|AAA88587.1| ORF1 (AA at 3); putative [Streptococcus mutans]
          Length = 86

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 24/99 (24%)

Query: 379 AAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR 438
           AA GLVAGIN+ R+    + + F +T + IG +   +T                      
Sbjct: 1   AASGLVAGINAVRRFKDEEAVIFPQTTA-IGALPYYITHTKSK----------------- 42

Query: 439 PDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSL 477
                    P+ +  G I +    R     + Y  +   
Sbjct: 43  ------HFQPMNINFGIIKDLGGPRIRDKKKRYEKIAER 75


>gi|56695257|ref|YP_165603.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Ruegeria pomeroyi DSS-3]
 gi|56676994|gb|AAV93660.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Ruegeria pomeroyi DSS-3]
          Length = 462

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YDVI+IG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  TYDVIIIGAGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHASHSLH 61

Query: 61 EID---ALDGLMGR 71
          E     A  GL G+
Sbjct: 62 EAQHNFAKMGLKGK 75


>gi|20091786|ref|NP_617861.1| hypothetical protein MA2968 [Methanosarcina acetivorans C2A]
 gi|19916971|gb|AAM06341.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
          C2A]
          Length = 484

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVIV+G G +G  AA   +K G    ++
Sbjct: 2  KKYDVIVVGAGVSGLLAALTLSKHGKKVLVL 32


>gi|115668754|ref|XP_789059.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 341

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA-------IGGLGKG 56
           +VI++G G  G   A V A+ G    +I         I      P        +G     
Sbjct: 11  EVIIVGSGILGSAMATVLARDGRKVTVIERDMKEPDRIVGELFQPGGRQALTELGLGDCA 70

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               EI     ++        I F+    K G           R  + +++++  +++EN
Sbjct: 71  SGFEEIRMDGFVIYDPITKEPIDFQYPKDKAGKIQPATCFHHGR--FVMSLRKAAMAEEN 128

Query: 117 LDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
           +  I+G V     EK  I  +       Q+  ++R    ++  GTF +  
Sbjct: 129 VTYIEGTVTTIVEEKGRIVGVEYKKKGQQEKEILRAPLTIVADGTFSKFR 178


>gi|148652080|ref|YP_001279173.1| dihydrolipoamide dehydrogenase [Psychrobacter sp. PRwf-1]
 gi|148571164|gb|ABQ93223.1| dihydrolipoamide dehydrogenase [Psychrobacter sp. PRwf-1]
          Length = 485

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YD++VIGGG  G EAA  A +LG S A I
Sbjct: 1  MKDNYDLVVIGGGPGGYEAAIRAGQLGMSVACI 33


>gi|330501447|ref|YP_004378316.1| putative FMN oxidoreductase [Pseudomonas mendocina NK-01]
 gi|328915732|gb|AEB56563.1| putative FMN oxidoreductase [Pseudomonas mendocina NK-01]
          Length = 686

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+++GGG AG EAA VAA+ G    L 
Sbjct: 393 VVIVGGGPAGMEAARVAAERGHDVTLF 419


>gi|258404325|ref|YP_003197067.1| hypothetical protein Dret_0187 [Desulfohalobium retbaense DSM 5692]
 gi|257796552|gb|ACV67489.1| HI0933 family protein [Desulfohalobium retbaense DSM 5692]
          Length = 433

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 94/434 (21%), Positives = 164/434 (37%), Gaps = 77/434 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV-----REI 62
           VIVIGGG AG  AA  AA+ GA   L       +        I G G+ ++      RE 
Sbjct: 16  VIVIGGGPAGLLAAGYAARQGAEVVL----LEKMHKPGLKLGITGKGRCNVTNAAPLREF 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR--ELYRLAMQR-EILSQENLDV 119
            A  G  GR    A  +F   ++++  A  G  T  +R   ++   ++   + S+    V
Sbjct: 72  LAHFGTQGRFLRQALNRFSPQDLQELFASIGIATVVERGGRVFPEHLRAPAVASRLTEWV 131

Query: 120 IQG--------EVAGFNTEKNIISSIVM---QDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
            +G        EV G    ++ ++ + +   Q  S+  C  +++ TG             
Sbjct: 132 KKGGVRVQTHTEVLGVTATRDRVTGVRIRGEQGESVWPCHALIVATG----------GAS 181

Query: 169 IP-AGRMGDSP--SNSLFNSFMKFDFDTGRLKTG--TPARLDGKTIIW---------DKT 214
            P  G  G+      +L ++ +        L+T   T ARL G ++            KT
Sbjct: 182 YPQTGSTGEGASWMTALGHTVVPCRPALVPLETAGDTAARLQGLSLRNVEVSLWLRGKKT 241

Query: 215 EKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRII------MENIKHSAIYSGDIK 268
            + F +     F      +     +      N E   +       ++  K  A    DI+
Sbjct: 242 AQAFGEMVFTHFGVSGPVVLELSQQAVDLLRNGECPELCIDLKPALDETKLDARLLRDIQ 301

Query: 269 SYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP- 327
             G +   +    ++         I LE  GL+  +    G  TA        +++  P 
Sbjct: 302 HKGKKQIANWLRDLLPTSLIP---ICLEATGLDGSL--QAGQMTARQRRNLKMWLKYFPL 356

Query: 328 ------GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI----NGTTGY-- 375
                 G E+  +   G A++   ++P+    T+++K + GL+LAG+I      T GY  
Sbjct: 357 PLTGYRGFEEAIVTAGGVALQE--VDPR----TMQSKLVPGLYLAGEILDLAADTGGYNL 410

Query: 376 EEAAAQGLVAGINS 389
           + A + G+VAG  +
Sbjct: 411 QAAFSTGVVAGEAA 424


>gi|297543631|ref|YP_003675933.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841406|gb|ADH59922.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
             YDV+VIGGG AG  AA    +    T LI    
Sbjct: 5  KEYYDVVVIGGGPAGMTAAIYCGRARLKTLLIEKSL 40


>gi|290581031|ref|YP_003485423.1| putative thioredoxin reductase [Streptococcus mutans NN2025]
 gi|254997930|dbj|BAH88531.1| putative thioredoxin reductase [Streptococcus mutans NN2025]
          Length = 304

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH--------KTSTIGSMSCNPAIGGLGKGH 57
          YD I+IG G AG  AA  AA+     ALI           TS I +      I G     
Sbjct: 2  YDTIIIGSGPAGMTAALYAARSNLKVALIEQGAPGGQMNNTSDIENYPGYDLISGPELSM 61

Query: 58 LVRE 61
           + E
Sbjct: 62 KMHE 65


>gi|229145024|ref|ZP_04273418.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST24]
 gi|228638430|gb|EEK94866.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST24]
          Length = 436

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK+G    ++  K+S  G           G+G    +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKVGRKVIVLE-KSSQFG-----------GRGMTTNKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|149916967|ref|ZP_01905468.1| probable NAD(FAD)-dependent dehydrogenase [Plesiocystis pacifica
           SIR-1]
 gi|149822245|gb|EDM81636.1| probable NAD(FAD)-dependent dehydrogenase [Plesiocystis pacifica
           SIR-1]
          Length = 552

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 20/174 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL- 65
           +V ++G G AG   A   A+ G    ++                    +G L  E +   
Sbjct: 117 EVAIVGAGPAGMFCAWQLARRGVRAVVLE--RGKAIRERRRDLAALSQRGELNPESNYCF 174

Query: 66  ---------DGLMGRVADAAGIQFRVLNVKKG----PAVRGPR---TQADRELYRLAMQR 109
                    DG +   +D  G    VL    G    PA+          ++    +   R
Sbjct: 175 GEGGAGTFSDGKLYTRSDKRGSVREVLEALVGYGAPPAILVDARPHIGTNKLPRVITAMR 234

Query: 110 EILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           E L    +++     V G   E   +  + + D  ++R   VV+  G   + V+
Sbjct: 235 EHLRDAGVEIEFDARVDGLLVEGGALRGVRLADGRVVRVPRVVVAPGHSAQDVL 288


>gi|113866995|ref|YP_725484.1| flavoprotein [Ralstonia eutropha H16]
 gi|113525771|emb|CAJ92116.1| predicted flavoprotein [Ralstonia eutropha H16]
          Length = 421

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGGG AG  AA V A  GAS A+       + S+     + G G  +L    +   
Sbjct: 15  DVAVIGGGPAGLMAAEVLAAQGASVAVY----DAMPSVGRKFLMAGKGGMNLTH-AEPEP 69

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
             +GR          +L      A  GP+   D   
Sbjct: 70  AFLGRYGARTAQIAPML------AGFGPQALRDWVH 99


>gi|92113565|ref|YP_573493.1| HI0933-like protein [Chromohalobacter salexigens DSM 3043]
 gi|91796655|gb|ABE58794.1| HI0933-like protein [Chromohalobacter salexigens DSM 3043]
          Length = 394

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          + ++YDV+VIG G AG   A+ A   G    +                + G G+ +
Sbjct: 1  MAQTYDVVVIGAGAAGLMCASTAGYAGRRVLV----LDHANKAGKKILMSGGGRCN 52


>gi|30020516|ref|NP_832147.1| dehydrogenase [Bacillus cereus ATCC 14579]
 gi|229127822|ref|ZP_04256808.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-Cer4]
 gi|296502977|ref|YP_003664677.1| dehydrogenase [Bacillus thuringiensis BMB171]
 gi|29896067|gb|AAP09348.1| Dehydrogenase [Bacillus cereus ATCC 14579]
 gi|228655587|gb|EEL11439.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-Cer4]
 gi|296324029|gb|ADH06957.1| dehydrogenase [Bacillus thuringiensis BMB171]
          Length = 436

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK+G    ++  K+S  G           G+G    +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKVGRKVIVLE-KSSQFG-----------GRGMTTNKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|24378951|ref|NP_720906.1| putative thioredoxin reductase (NADPH) [Streptococcus mutans
          UA159]
 gi|24376838|gb|AAN58212.1|AE014892_5 putative thioredoxin reductase (NADPH) [Streptococcus mutans
          UA159]
          Length = 304

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH--------KTSTIGSMSCNPAIGGLGKGH 57
          YD I+IG G AG  AA  AA+     ALI           TS I +      I G     
Sbjct: 2  YDTIIIGSGPAGMTAALYAARSNLKVALIEQGAPGGQMNNTSDIENYPGYDLISGPELSM 61

Query: 58 LVRE 61
           + E
Sbjct: 62 KMHE 65


>gi|83943404|ref|ZP_00955863.1| regulatory protein [Sulfitobacter sp. EE-36]
 gi|83845636|gb|EAP83514.1| regulatory protein [Sulfitobacter sp. EE-36]
          Length = 448

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  + D+IVIG G AG  AA  AA+ G S A++
Sbjct: 1  MTETLDLIVIGAGMAGVNAAKKAARAGWSVAIV 33


>gi|217966471|ref|YP_002351977.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Dictyoglomus turgidum DSM 6724]
 gi|217335570|gb|ACK41363.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Dictyoglomus turgidum DSM 6724]
          Length = 415

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 37/154 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +  D+++IGGG AG  A   + K G    ++                           
Sbjct: 1   MLKEVDIVIIGGGPAGLSAGISSGKKGKKVLILERN------------------------ 36

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            D L G++ +                GP             Y   + +EI + +N++   
Sbjct: 37  -DELGGVLNQCIHPGFGLVYYKEELTGP------------EYAQRLIQEIKNLKNVEYFL 83

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +     E   + ++       I+   V+ +TG
Sbjct: 84  NTMVLQVKEDKEVIAVNSDGLWKIKAKAVIFSTG 117


>gi|254449717|ref|ZP_05063154.1| dihydrolipoyl dehydrogenase [Octadecabacter antarcticus 238]
 gi|198264123|gb|EDY88393.1| dihydrolipoyl dehydrogenase [Octadecabacter antarcticus 238]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-----TSTIGSMSCNPAIGGLGKG 56
          +++ +D++VIG G  G  AA  AA+LG  TA++  +         G +     +     G
Sbjct: 1  MSKEFDLVVIGSGPGGYVAAIRAAQLGMKTAIVEAEELGGVCLNWGCIPTKALLKTADVG 60

Query: 57 HLVREIDALD 66
            +RE     
Sbjct: 61 RTIREAKEYG 70


>gi|218437505|ref|YP_002375834.1| geranylgeranyl reductase [Cyanothece sp. PCC 7424]
 gi|218170233|gb|ACK68966.1| geranylgeranyl reductase [Cyanothece sp. PCC 7424]
          Length = 376

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +D IV+G G AG  A+   AK G S  L       +      P  GG+ 
Sbjct: 2  FDCIVVGSGPAGATASYFLAKKGHSVLL----LDKVSLPRYKPCGGGVS 46


>gi|166154772|ref|YP_001654890.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 434/Bu]
 gi|166155647|ref|YP_001653902.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336046|ref|ZP_07224290.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis L2tet1]
 gi|165930760|emb|CAP04257.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 434/Bu]
 gi|165931635|emb|CAP07211.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           +N ++D +VIG G  G  AA  AA+ G  TALI  K    G+     C P+   L    +
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIE-KREAGGTCLNRGCIPSKALLAGAEV 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V +I        R AD  GI     ++   PA+   +    R + R  +   I S + + 
Sbjct: 60  VTQI--------RHADQFGIHVEGFSINY-PAMVQRKDSVVRSI-RDGLNGLIRSNK-IT 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           V  G  +  ++ +  I     ++ S+I+  +++L TG+  R  
Sbjct: 109 VFSGRGSLISSTEVKILG---ENPSVIKAHSIILATGSEPRAF 148


>gi|163738638|ref|ZP_02146052.1| sarcosine oxidase, alpha subunit family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161387966|gb|EDQ12321.1| sarcosine oxidase, alpha subunit family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 973

 Score = 42.6 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1   MINRSY---DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  ++Y   D++VIG G AG  AA  AA+ GA   L 
Sbjct: 158 IYEKAYGFCDLLVIGAGPAGLMAALTAARGGADVILC 194


>gi|319409391|emb|CBI83035.1| SdhA succinate dehydrogenase flavoprotein subunit [Bartonella
           schoenbuchensis R1]
          Length = 614

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 64/224 (28%), Gaps = 60/224 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DV+VIG G +G  A    A+ G  TA IT    T        A GG+        
Sbjct: 20  VDHKFDVVVIGAGGSGLRATLGMAEQGLRTACITKVFPTRS--HTVAAQGGIAASLANMG 77

Query: 62  IDALDGLMGRVA-------DAAGIQFRVLNVK---------------------------- 86
            D     +           D   +++ V N                              
Sbjct: 78  PDNWQWHLYDTVKGSDWLGDTDAMEYLVRNAPAAVYELEHYGVPFSRTQEGKIYQRPFGG 137

Query: 87  ------KGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNI 133
                 +GP V+     ADR        LY  +++           I+           +
Sbjct: 138 HTTQFGEGPPVQRTCAAADRTGHAILHALYGQSLKHNAQ-----FFIEYFALDLIMTDGV 192

Query: 134 ISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + +V   + D ++       VVL TG + R            G
Sbjct: 193 CTGVVAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTG 236


>gi|319788260|ref|YP_004147735.1| HI0933 family protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317466772|gb|ADV28504.1| HI0933 family protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 398

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IVIG G AG   A  A + G    ++ H
Sbjct: 8  YDAIVIGAGAAGLMCALTAGQRGLRVLVVEH 38


>gi|253576929|ref|ZP_04854253.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251843660|gb|EES71684.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 748

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+ +IGGG  G  AA  AA+LG   ALI
Sbjct: 9  KYDLTIIGGGMPGVCAAVQAARLGLKVALI 38


>gi|89889792|ref|ZP_01201303.1| succinate dehydrogenase, flavoprotein subunit [Flavobacteria
          bacterium BBFL7]
 gi|89518065|gb|EAS20721.1| succinate dehydrogenase, flavoprotein subunit [Flavobacteria
          bacterium BBFL7]
          Length = 667

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           R+ DVIV+G G AG  AAA  A+LG +     + 
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKTFCYN 66


>gi|15605286|ref|NP_220072.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789294|ref|YP_328380.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis A/HAR-13]
 gi|237802986|ref|YP_002888180.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804908|ref|YP_002889062.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311375|ref|ZP_05353945.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 6276]
 gi|255317676|ref|ZP_05358922.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 6276s]
 gi|7531099|sp|O84561|DLDH_CHLTR RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
           Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
           component of 2-oxoglutarate dehydrogenase complex
 gi|3328997|gb|AAC68159.1| Lipoamide Dehydrogenase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167824|gb|AAX50832.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis A/HAR-13]
 gi|231273208|emb|CAX10121.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274220|emb|CAX11014.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436090|gb|ADH18264.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/9768]
 gi|296437018|gb|ADH19188.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/11222]
 gi|296437951|gb|ADH20112.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/11074]
 gi|297140451|gb|ADH97209.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis G/9301]
 gi|297748687|gb|ADI51233.1| Dihydrolipoamide dehydrogenase [Chlamydia trachomatis D-EC]
 gi|297749567|gb|ADI52245.1| Dihydrolipoamide dehydrogenase [Chlamydia trachomatis D-LC]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           +N ++D +VIG G  G  AA  AA+ G  TALI  K    G+     C P+   L    +
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIE-KREAGGTCLNRGCIPSKALLAGAEV 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V +I        R AD  GI     ++   PA+   +    R + R  +   I S + + 
Sbjct: 60  VTQI--------RHADQFGIHVEGFSINY-PAMVQRKDSVVRSI-RDGLNGLIRSNK-IT 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           V  G  +  ++ +  I     ++ S+I+  +++L TG+  R  
Sbjct: 109 VFSGRGSLISSTEVKILG---ENPSVIKAHSIILATGSEPRAF 148


>gi|145225400|ref|YP_001136078.1| flavoprotein disulfide reductase [Mycobacterium gilvum PYR-GCK]
 gi|315445748|ref|YP_004078627.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase component [Mycobacterium sp. Spyr1]
 gi|145217886|gb|ABP47290.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Mycobacterium gilvum PYR-GCK]
 gi|315264051|gb|ADU00793.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase component [Mycobacterium sp. Spyr1]
          Length = 471

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSM----SCNPAIGGLGKGHLVREI 62
           +++IGGG AG EAA VAA LG   T +    +  +G       C P+   +    +  E+
Sbjct: 5   IVIIGGGPAGYEAALVAAGLGRELTQVTVVDSDGLGGACVLYDCVPSKTFIASTGVRTEL 64

Query: 63  DALDGLMGRVA---DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G MG      DA     ++ N  K  A                +  ++L+Q    +
Sbjct: 65  RRAQG-MGYDIGIDDAPISLPKINNRVKTLAASQ----------SADISSQLLNQRVTII 113

Query: 120 --IQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLR 159
                 V       +    +   D    +++   V++ TG   R
Sbjct: 114 GGRGELVDDVAGMAHHRVKVTTHDGKVGVLKADVVLIATGASPR 157


>gi|322805581|emb|CBZ03146.1| thioredoxin reductase [Clostridium botulinum H04402 065]
          Length = 313

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YDVI+IG G AG  A   AA+    T ++   
Sbjct: 1  MENLYDVIIIGSGPAGLSAGLYAARARLKTLILERN 36


>gi|322391945|ref|ZP_08065409.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus peroris
           ATCC 700780]
 gi|321145171|gb|EFX40568.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus peroris
           ATCC 700780]
          Length = 567

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           N +YDV+VIGGG AG  +A  AA+LG   AL+
Sbjct: 109 NDAYDVVVIGGGPAGYVSAIKAAQLGGKVALV 140


>gi|289449443|ref|YP_003475863.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289183990|gb|ADC90415.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 324

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 44/156 (28%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI +  D+I+IG G AG  AA  A   G S  +                           
Sbjct: 31  MIMQ--DLIIIGAGPAGVSAALYAQSRGLSLTIF-------------------------- 62

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E D + GL+G+V+  +     V++   GP             +   ++ +I +   L VI
Sbjct: 63  EKDRIGGLIGKVSKVSHYTSVVVDET-GP------------EFAARLKNQIEAY-GLKVI 108

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           + EV G +      + +     +      V++ TG+
Sbjct: 109 KEEVTGLSKTDAGFT-VQTAA-ASYTAKKVIIATGS 142


>gi|262371135|ref|ZP_06064457.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acinetobacter johnsonii SH046]
 gi|262314021|gb|EEY95066.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acinetobacter johnsonii SH046]
          Length = 458

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 29/158 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+I+IG G AG  AA   A         T     I     +     +G       I   
Sbjct: 2   YDLIIIGAGTAGI-AAYQQA------VKSTQNLLIINDGPWDTTCARVGCMPSKVLISTA 54

Query: 66  DGLM-GRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLAMQREILSQENLD 118
           + +   + AD  G+Q            +  R+Q        R+ +  +  + + S     
Sbjct: 55  NRMHDIQHADRVGLQVE---------SKIDRSQVMQHVQKLRDRFTHSTLKTVESWPESH 105

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            IQG     +++   +      +    +  + +L  G+
Sbjct: 106 KIQGRARFLDSKTVEV------NGQHYQAKSFILAVGS 137


>gi|226357443|ref|YP_002787182.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Deinococcus deserti VCD115]
 gi|226319433|gb|ACO47428.1| putative FAD-dependent pyridine nucleotide-disulphide
          oxidoreductase [Deinococcus deserti VCD115]
          Length = 453

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           RS DV+V+G G AG  AA  AA+ GA   ++       G +     +     GH    +
Sbjct: 4  ERSADVVVVGAGPAGLTAARCAAEGGAEVLVLDASPGPGGQIWR--GLREEQPGHAAALL 61

Query: 63 DALDGLMGRVADAAGIQF-RVLNVKK 87
            + GL  ++   A + F   LN  +
Sbjct: 62 REVRGLGVQILSQAQVSFAEPLNGSR 87


>gi|126733206|ref|ZP_01748953.1| sarcosine oxidase, alpha subunit family protein [Roseobacter sp.
           CCS2]
 gi|126716072|gb|EBA12936.1| sarcosine oxidase, alpha subunit family protein [Roseobacter sp.
           CCS2]
          Length = 968

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           DV+VIG G AG  AA  A + GA   L
Sbjct: 162 DVLVIGAGPAGLMAALTAGRAGADVIL 188


>gi|172062702|ref|YP_001810353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ambifaria MC40-6]
 gi|171995219|gb|ACB66137.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ambifaria MC40-6]
          Length = 406

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG  G E AA A + G    +I                       L R +  + G
Sbjct: 148 VAVLGGGFIGLEVAAAARQRGCDVTVI-----------------DPAPRLLQRALPEVVG 190

Query: 68  LMGR-VADAAGIQFRV---LNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVIQG 122
              R + DA G+ F++       +  A  G   + DR ++    +   I    N+++ Q 
Sbjct: 191 AYARQLHDAHGVNFQMATLPRAIRRGAGGGAIVETDRGDVPADIVVVGIGVVPNVELAQA 250

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                +    + +     D ++     V +     L   + I   ++ 
Sbjct: 251 AGLEVDNGIRVDAGCRTADQAIFAAGEVTMHFNPLLGRHVRIESWQVA 298


>gi|90419281|ref|ZP_01227191.1| putative MerA, mercuric ion reductase [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90336218|gb|EAS49959.1| putative MerA, mercuric ion reductase [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 513

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          SYD+ V+G G AG  AA  AA LGA  ALI H
Sbjct: 51 SYDLAVVGAGSAGFSAAITAADLGARVALIGH 82


>gi|325968648|ref|YP_004244840.1| electron transfer flavoprotein-quinone oxidoreductase
          [Vulcanisaeta moutnovskia 768-28]
 gi|323707851|gb|ADY01338.1| electron transfer flavoprotein-quinone oxidoreductase
          [Vulcanisaeta moutnovskia 768-28]
          Length = 425

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DV+++GGG AG  AA   A  G    +I
Sbjct: 1  MGIKFDVVIVGGGPAGLTAAQQLASRGFKVLVI 33


>gi|290968411|ref|ZP_06559951.1| pyridine nucleotide-disulfide oxidoreductase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781598|gb|EFD94186.1| pyridine nucleotide-disulfide oxidoreductase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 422

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 54/166 (32%), Gaps = 41/166 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  + YD+I++GGG AG  AA  A   GA   L                        ++ 
Sbjct: 1   MNEQIYDIIIVGGGPAGLSAAYSACLHGAKKIL------------------------ILE 36

Query: 61  EIDALDGLMGRVADAAGI--QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
               + G++ +          F+      G A R      DR              E   
Sbjct: 37  RDREVGGILQQCIHNGFGLHHFKEELTGPGYAQRCYDLIKDRS-------------EVTI 83

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG--TFLRGVI 162
           ++   V   + EK + +    +    I+  T++LT G     RG I
Sbjct: 84  LVDTMVLQVSAEKIVTAVSPTEGVLHIKGKTIILTMGCRERTRGAI 129


>gi|269302620|gb|ACZ32720.1| dihydrolipoamide dehydrogenase [Chlamydophila pneumoniae LPCoLN]
          Length = 476

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           + + +D +VIG G  G  AA  AA+    TALI    +  T  +  C P+   +   ++V
Sbjct: 16  MTQEFDCVVIGAGPGGYVAAITAAQSKLRTALIEEDQAGGTCLNRGCIPSKALIAGANVV 75

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             I   +   G   D   I +  +  +K   V+G R   +  +              + V
Sbjct: 76  SHIKHAERF-GIHVDGYTIDYPAMAKRKNTVVQGIRQGLEGLIRSNK----------ITV 124

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           ++G   G       +  ++ QD ++I+ + ++L TG+
Sbjct: 125 LKG--TGSLISSTEVK-VIGQDTTIIKANHIILATGS 158


>gi|259506600|ref|ZP_05749502.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Corynebacterium efficiens YS-314]
 gi|259165798|gb|EEW50352.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Corynebacterium efficiens YS-314]
          Length = 470

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   LI
Sbjct: 5  IVIIGGGPAGYEAALAGAKYGADVTLI 31


>gi|224136608|ref|XP_002322372.1| predicted protein [Populus trichocarpa]
 gi|222869368|gb|EEF06499.1| predicted protein [Populus trichocarpa]
          Length = 466

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 2   DIIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 61

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +IDA   ++G      G   ++    +               +   M+ +  +  N+ +
Sbjct: 62  SDIDAQ-RVLGYAIFKDGKSTKLSYPLENFPSDVAGRSFHHGRFIQKMREKAATLSNVKL 120

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    +    +  
Sbjct: 121 EQGTVTSLLKENGTIKGVQYKTRVGQELTA 150


>gi|224109574|ref|XP_002333235.1| predicted protein [Populus trichocarpa]
 gi|222835557|gb|EEE73992.1| predicted protein [Populus trichocarpa]
          Length = 473

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           D+I++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 10  DIIIVGAGVAGSALAYTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCV 69

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +IDA   ++G      G   ++    +               +   M+ +  +  N+ +
Sbjct: 70  SDIDAQ-RVLGYAIFKDGKSTKLSYPLENFPSDVAGRSFHHGRFIQKMREKAATLSNVKL 128

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    +    +  
Sbjct: 129 EQGTVTSLLKENGTIKGVQYKTRVGQELTA 158


>gi|197334240|ref|YP_002154855.1| hypothetical protein VFMJ11_0084 [Vibrio fischeri MJ11]
 gi|197315730|gb|ACH65177.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 394

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  DV+VIG G AG   AA AAK G S  ++ H
Sbjct: 2  KKVDVVVIGAGAAGLMCAAEAAKRGRSVLVVDH 34


>gi|163742976|ref|ZP_02150359.1| sarcosine oxidase, alpha subunit family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383659|gb|EDQ08045.1| sarcosine oxidase, alpha subunit family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 973

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1   MINRSY---DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  ++Y   D++VIG G AG  AA  AA+ GA   L 
Sbjct: 158 IYEKAYGFCDLLVIGAGPAGLMAALTAARGGADVILC 194


>gi|154492239|ref|ZP_02031865.1| hypothetical protein PARMER_01873 [Parabacteroides merdae ATCC
          43184]
 gi|154087464|gb|EDN86509.1| hypothetical protein PARMER_01873 [Parabacteroides merdae ATCC
          43184]
          Length = 449

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +YD+ +IGGG AG  AA  AA+ G  T L    
Sbjct: 2  NYDIAIIGGGPAGYTAAERAAEGGLKTVLFEKN 34


>gi|126348158|emb|CAJ89879.1| putative oxidoreductase [Streptomyces ambofaciens ATCC 23877]
          Length = 532

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 19 SHAYDAVIVGGGHNGLVAAAYLARAGCSVLVL 50


>gi|59710693|ref|YP_203469.1| oxidoreductase [Vibrio fischeri ES114]
 gi|59478794|gb|AAW84581.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Vibrio
          fischeri ES114]
          Length = 394

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  DV+VIG G AG   AA AAK G S  ++ H
Sbjct: 2  KKVDVVVIGAGAAGLMCAAEAAKRGRSVLVVDH 34


>gi|25027264|ref|NP_737318.1| flavoprotein disulfide reductase [Corynebacterium efficiens
          YS-314]
 gi|23492545|dbj|BAC17518.1| putative lipoamide dehydrogenase [Corynebacterium efficiens
          YS-314]
          Length = 475

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   LI
Sbjct: 10 IVIIGGGPAGYEAALAGAKYGADVTLI 36


>gi|14591506|ref|NP_143587.1| D-nopaline dehydrogenase [Pyrococcus horikoshii OT3]
 gi|3258180|dbj|BAA30863.1| 482aa long hypothetical D-nopaline dehydrogenase [Pyrococcus
           horikoshii OT3]
          Length = 482

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 41/154 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV+GGG AG  AA  A+  GA   L          +  +P +G    G LV++     
Sbjct: 122 DIIVVGGGPAGMMAAISASDTGAKVIL----------IDESPMLG----GQLVKQTHKFF 167

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVA 125
           G           QF  +   K                   ++REI  +EN+   ++    
Sbjct: 168 GK--------RDQFAGIRGIKI---------------AEILRREIEKRENIKAYLRTSAV 204

Query: 126 GF--NTEKNIISSIVMQDN-SMIRCSTVVLTTGT 156
           G   + E+ ++  +  ++     +   V++ TG 
Sbjct: 205 GIFQDGEEKLVIGVRKENELIEFKGKAVIVATGA 238


>gi|113476196|ref|YP_722257.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Trichodesmium
          erythraeum IMS101]
 gi|110167244|gb|ABG51784.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Trichodesmium
          erythraeum IMS101]
          Length = 133

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          M    YD++++GGG AG   A      G   AL+  K   + +
Sbjct: 1  MTKLDYDLVIVGGGIAGTALACALKNSGLKVALVETKLKCVAA 43


>gi|326924051|ref|XP_003208246.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation
           factor 3 subunit A-like [Meleagris gallopavo]
          Length = 1359

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 569 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 628

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 629 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 681

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 682 NQEKKIDYFERAKRLEEIPL 701


>gi|320354285|ref|YP_004195624.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfobulbus propionicus DSM 2032]
 gi|320122787|gb|ADW18333.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfobulbus propionicus DSM 2032]
          Length = 304

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YDV++IG G AG +AA  A +      ++
Sbjct: 1  MAEQLYDVVIIGAGPAGLQAAIHATRKKTRVLVL 34


>gi|317506289|ref|ZP_07964104.1| pyridine nucleotide-disulfide oxidoreductase [Segniliparus
          rugosus ATCC BAA-974]
 gi|316255426|gb|EFV14681.1| pyridine nucleotide-disulfide oxidoreductase [Segniliparus
          rugosus ATCC BAA-974]
          Length = 468

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IGGG AG EAA VA  LGA   ++
Sbjct: 3  DVVIIGGGPAGYEAALVARDLGAEVVIL 30


>gi|300784260|ref|YP_003764551.1| succinate dehydrogenase flavoprotein subunit [Amycolatopsis
          mediterranei U32]
 gi|299793774|gb|ADJ44149.1| succinate dehydrogenase flavoprotein subunit [Amycolatopsis
          mediterranei U32]
          Length = 638

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           SYDV+VIG G AG  A   A + G   A++       G      A GG    
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGFRVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|299131810|ref|ZP_07025005.1| FAD dependent oxidoreductase [Afipia sp. 1NLS2]
 gi|298591947|gb|EFI52147.1| FAD dependent oxidoreductase [Afipia sp. 1NLS2]
          Length = 468

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG  AA  AA+ G S A++  +     +   N      G G  + ++ A  
Sbjct: 33  DICVVGGGLAGLTAAREAARRGMSVAVLEGQQVGWAASGHNLGSVLPGYGVPIDDLIARV 92

Query: 67  GL-----MGRVADAAGIQFRVLNVKKGP 89
           G+     + ++A+  G   R       P
Sbjct: 93  GIAHARDLWKLAEEGGDYIRDTIATSVP 120


>gi|218258703|ref|ZP_03475016.1| hypothetical protein PRABACTJOHN_00671 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225270|gb|EEC97920.1| hypothetical protein PRABACTJOHN_00671 [Parabacteroides johnsonii
           DSM 18315]
          Length = 338

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGLGK 55
            YD++V+G G AG  AA   A+ G   ALI ++            + +            
Sbjct: 191 HYDLVVVGAGTAGLSAAIKGAREGLKVALINNRPVPGGNNSTEIRVVASGEMNVKPYTAL 250

Query: 56  GHLVREID 63
           G+++REI 
Sbjct: 251 GNVIREIR 258


>gi|212704058|ref|ZP_03312186.1| hypothetical protein DESPIG_02111 [Desulfovibrio piger ATCC 29098]
 gi|212672563|gb|EEB33046.1| hypothetical protein DESPIG_02111 [Desulfovibrio piger ATCC 29098]
          Length = 631

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           DV++IGGG  GCE A   AK G    +   +  
Sbjct: 495 DVLIIGGGLVGCETALFLAKNGCHPLVAEMRED 527


>gi|118093099|ref|XP_421787.2| PREDICTED: similar to p167 [Gallus gallus]
          Length = 1505

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 708 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 767

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 768 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 820

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 821 NQEKKIDYFERAKRLEEIPL 840


>gi|299065280|emb|CBJ36448.1| conserved exported protein of unknown function [Ralstonia
          solanacearum CMR15]
          Length = 426

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +       + S      + G+G  ++    +A D 
Sbjct: 10 VAVIGAGPAGLMAAEVLSRAGVRVEVF----DAMPSAGRKFLLAGIGGMNITHS-EAFDA 64

Query: 68 LMGRVADA 75
           +GR    
Sbjct: 65 FLGRYRAR 72


>gi|297792223|ref|XP_002863996.1| hypothetical protein ARALYDRAFT_495015 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297309831|gb|EFH40255.1| hypothetical protein ARALYDRAFT_495015 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 557

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +D +VIGGGH G  AAA  A+ G S A++
Sbjct: 11 KKKWDAVVIGGGHNGLTAAAYLARGGLSVAVL 42


>gi|260103250|ref|ZP_05753487.1| thioredoxin reductase [Lactobacillus helveticus DSM 20075]
 gi|260082963|gb|EEW67083.1| thioredoxin reductase [Lactobacillus helveticus DSM 20075]
          Length = 307

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD++VIG G  G  AA   A+     A+I                          +  
Sbjct: 2   KEYDLVVIGAGPGGMTAAMYGARANLKVAMI--------------------------DRG 35

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M   A+       V N    P++ GP      ++Y+ A ++ +        + G+
Sbjct: 36  VYGGQMNNTAE-------VENYPGFPSIMGPDLG--EKMYKSATKQGVE------FVYGD 80

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     +      IV  D   I    V++ TG+  R +   G+ +   
Sbjct: 81  VQKIELDGQK--RIVKMDPEDITAKAVIIATGSTNRKLGIPGEEEYSG 126


>gi|161507937|ref|YP_001577901.1| thioredoxin reductase [Lactobacillus helveticus DPC 4571]
 gi|160348926|gb|ABX27600.1| Thioredoxin reductase [Lactobacillus helveticus DPC 4571]
 gi|328464575|gb|EGF35942.1| thioredoxin reductase [Lactobacillus helveticus MTCC 5463]
          Length = 307

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD++VIG G  G  AA   A+     A+I                          +  
Sbjct: 2   KEYDLVVIGAGPGGMTAAMYGARANLKVAMI--------------------------DRG 35

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M   A+       V N    P++ GP      ++Y+ A ++ +        + G+
Sbjct: 36  VYGGQMNNTAE-------VENYPGFPSIMGPDLG--EKMYKSATKQGVE------FVYGD 80

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     +      IV  D   I    V++ TG+  R +   G+ +   
Sbjct: 81  VQKIELDGQK--RIVKMDPEDITAKAVIIATGSTNRKLGIPGEEEYSG 126


>gi|160894927|ref|ZP_02075701.1| hypothetical protein CLOL250_02477 [Clostridium sp. L2-50]
 gi|156863358|gb|EDO56789.1| hypothetical protein CLOL250_02477 [Clostridium sp. L2-50]
          Length = 581

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 1  MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          M + + YDV++ G G AG  AA   A+      ++      IG             G   
Sbjct: 1  MKDENMYDVVIAGAGPAGLTAAIYLARACYRVLVVE--KEKIGGQITITEEVVNYPGIEK 58

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKK 87
           +  +L   M R A+  G +F +  V+K
Sbjct: 59 TDGKSLTAAMYRQAENFGAEFLMAEVEK 86


>gi|89900588|ref|YP_523059.1| succinate dehydrogenase, flavoprotein subunit [Rhodoferax
          ferrireducens T118]
 gi|89345325|gb|ABD69528.1| succinate dehydrogenase subunit A [Rhodoferax ferrireducens T118]
          Length = 601

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G AG  A+   A  G + A+++
Sbjct: 9  KRKFDVVIVGAGGAGMSASLQLANAGLNVAVLS 41


>gi|18423042|ref|NP_568712.1| amine oxidase-related [Arabidopsis thaliana]
 gi|332008446|gb|AED95829.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis
          thaliana]
          Length = 556

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +D +VIGGGH G  AAA  A+ G S A++
Sbjct: 11 KKKWDAVVIGGGHNGLTAAAYLARGGLSVAVL 42


>gi|50084742|ref|YP_046252.1| putative ferredoxin reductase component (dioxygenase)
          [Acinetobacter sp. ADP1]
 gi|49530718|emb|CAG68430.1| putative ferredoxin reductase component (dioxygenase)
          [Acinetobacter sp. ADP1]
          Length = 413

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          +YDVI++G GHAG +AA    + G      T     IG     P
Sbjct: 3  NYDVIIVGTGHAGGQAAVALRQQG-----FTGSILMIGEELHLP 41


>gi|10177621|dbj|BAB10768.1| phytoene dehydrogenase-like [Arabidopsis thaliana]
          Length = 647

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +D +VIGGGH G  AAA  A+ G S A++
Sbjct: 11 KKKWDAVVIGGGHNGLTAAAYLARGGLSVAVL 42


>gi|89094825|ref|ZP_01167758.1| probable pyridine nucleotide-disulphide oxidoreductase
          [Oceanospirillum sp. MED92]
 gi|89080880|gb|EAR60119.1| probable pyridine nucleotide-disulphide oxidoreductase
          [Oceanospirillum sp. MED92]
          Length = 470

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  SYD+ +IG G AG  AA  A++ GA   ++  K    G +  N     L     + E
Sbjct: 1  MLSSYDLAIIGAGPAGMSAAITASQAGARVIVLDDKKRAGGQIYRNVTYSPLECPEKLGE 60

Query: 62 IDALDGLMGRVADAA 76
                 +    D  
Sbjct: 61 DYLSGQALVEAFDHC 75


>gi|87120791|ref|ZP_01076684.1| hypothetical protein MED121_18660 [Marinomonas sp. MED121]
 gi|86164019|gb|EAQ65291.1| hypothetical protein MED121_18660 [Marinomonas sp. MED121]
          Length = 427

 Score = 42.6 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLVRE 61
          +  +DV VIGGG  G  AA   A+ G   AL+  +    G+   N   GG    GH +  
Sbjct: 27 DHVFDVCVIGGGFTGLSAALHLAEKGYKVALLEAEKVAWGASGRN---GGQVCQGHNMSH 83

Query: 62 IDALDGLMGRVAD 74
           D +  +    AD
Sbjct: 84 QDMIAKVGKENAD 96


>gi|320103341|ref|YP_004178932.1| FAD dependent oxidoreductase [Isosphaera pallida ATCC 43644]
 gi|319750623|gb|ADV62383.1| FAD dependent oxidoreductase [Isosphaera pallida ATCC 43644]
          Length = 507

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  R +DV+++G GH G   AA  A+ G S  ++
Sbjct: 1  MAARRWDVVIVGAGHNGLTCAAYLARAGRSVLVL 34


>gi|317403732|gb|EFV84217.1| oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 431

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-----PAI--GGLGKGHLV 59
           DV V+G G AG   A   A+ G +  L+  +    G+   N     PA   G       V
Sbjct: 32  DVCVVGAGLAGLSTALELARRGRAVTLLEARRIAWGASGRNGGSVSPAFSAGADAIRRHV 91

Query: 60  REIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            E        L     +      R L +     V G R +  R     A++R    Q
Sbjct: 92  DEDHYRQLYRLSMEGVEIIRDNIRDLRIADAHKVDG-RLRVVRYEAAEALRRYCEDQ 147


>gi|313681015|ref|YP_004058754.1| thioredoxin reductase [Oceanithermus profundus DSM 14977]
 gi|313153730|gb|ADR37581.1| thioredoxin reductase [Oceanithermus profundus DSM 14977]
          Length = 327

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++YDV++IGGG AG  A   A + G  T ++
Sbjct: 15 DQTYDVVIIGGGPAGLTAGIYAGRGGLKTVIL 46


>gi|296165502|ref|ZP_06848033.1| NADH-flavin oxidoreductase/NADH oxidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899143|gb|EFG78618.1| NADH-flavin oxidoreductase/NADH oxidase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 671

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
           V+VIGGG AG EAA  AA  G    L+    +  G +   P
Sbjct: 382 VVVIGGGPAGMEAARSAAIAGHRVTLLETDDALGGQLRLVP 422


>gi|294979815|pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
          Phosphate-Crytsallized Mutant Of Monomeric Sarcosine
          Oxidase
 gi|294979816|pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
          Phosphate-Crytsallized Mutant Of Monomeric Sarcosine
          Oxidase
 gi|294979817|pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-Crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 gi|294979818|pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-Crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 gi|294979819|pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-Crystallized
          Mutant Of Monomeric Sarcosine Oxidase
 gi|294979820|pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-Crystallized
          Mutant Of Monomeric Sarcosine Oxidase
          Length = 389

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 3  HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 47


>gi|294979813|pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
          Sarcosine Oxidase
 gi|294979814|pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
          Sarcosine Oxidase
          Length = 389

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 3  HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 47


>gi|294011059|ref|YP_003544519.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit
           [Sphingobium japonicum UT26S]
 gi|292674389|dbj|BAI95907.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit
           [Sphingobium japonicum UT26S]
          Length = 604

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 60/227 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLGK 55
           +I+ +YD +V+G G +G  A   +A+ G  TA IT     ++ T+ +      ++G    
Sbjct: 7   IIDHTYDTVVVGAGGSGLRATMGSAEAGLKTACITKLFPTRSHTVAAQGGIAASLGNNSP 66

Query: 56  GHLVREI-DALDG-----------LMGRVADAAGIQFR---------------------- 81
            H    + D + G            M R A AA I+                        
Sbjct: 67  DHWTWHMYDTVKGSDWLGDQDAIEYMVREAPAAVIELEHAGVPFSRNDNGTIYQRPFGGH 126

Query: 82  VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-------VAGFNTEK--- 131
           + N+  GP V+     ADR  +  AM   +  Q    +                 E    
Sbjct: 127 MQNMGAGPPVQRTCAAADRTGH--AMLHALYQQ---SLKYDADFYIEYFAIDLIMEDGPN 181

Query: 132 -NIISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                 ++   M+D S+   R   VVL TG + R            G
Sbjct: 182 GKECRGVIAICMEDGSIHRFRSHAVVLATGGYGRAYFSATSAHSCTG 228


>gi|269216999|ref|ZP_06160853.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
 gi|269129806|gb|EEZ60890.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
          Length = 599

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           ++D+IV+G G AG   A  AA+ GA   + +  +  I     N AIG  
Sbjct: 89  THDIIVVGAGMAGLCTAVSAAETGADVLVFSASSKPISRGGSNHAIGSK 137


>gi|256258315|ref|ZP_05463851.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|260884623|ref|ZP_05896237.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|297247160|ref|ZP_06930878.1| dihydrolipoyl dehydrogenase [Brucella abortus bv. 5 str. B3196]
 gi|260874151|gb|EEX81220.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|297174329|gb|EFH33676.1| dihydrolipoyl dehydrogenase [Brucella abortus bv. 5 str. B3196]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEMTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|242052425|ref|XP_002455358.1| hypothetical protein SORBIDRAFT_03g009190 [Sorghum bicolor]
 gi|241927333|gb|EES00478.1| hypothetical protein SORBIDRAFT_03g009190 [Sorghum bicolor]
          Length = 413

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +DVIV+G G  G   A  AA  GA   L+
Sbjct: 18 DFDVIVVGAGIMGSCTAHAAASRGARVLLL 47


>gi|224475532|ref|YP_002633138.1| alkyl hydroperoxide reductase subunit F [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222420139|emb|CAL26953.1| alkyl hydroperoxide reductase subunit F [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 507

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 47/181 (25%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              +DV+VIGGG A   AA   A+ G  T ++                            
Sbjct: 203 KEPFDVLVIGGGPASGTAAIYTARKGLRTGIVA--------------------------- 235

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D + G +   AD     F  +    GP             +  A+++ I ++ ++DV+ G
Sbjct: 236 DRIGGQVNETADIE--NFITVKETTGP------------EFSSALEQHI-NEYDIDVMDG 280

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR-----GVIHIGKLKIPAGRMGDS 177
             A    +      + + +++ ++  TV+++TG   +     G   +    +      D 
Sbjct: 281 MRATNIEKTEDGIVVTLDNDAKLKSKTVIISTGARFKNLDIPGEDELRNKGVAYCPHCDG 340

Query: 178 P 178
           P
Sbjct: 341 P 341


>gi|91762628|ref|ZP_01264593.1| succinate dehydrogenase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718430|gb|EAS85080.1| succinate dehydrogenase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 590

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YDVIV+G G +G  AA   ++ G  TA I+
Sbjct: 6  IIDHEYDVIVLGAGGSGLRAAVGLSEAGLKTACIS 40


>gi|71082948|ref|YP_265667.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Pelagibacter ubique HTCC1062]
 gi|71062061|gb|AAZ21064.1| succinate dehydrogenase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 590

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YDVIV+G G +G  AA   ++ G  TA I+
Sbjct: 6  IIDHEYDVIVLGAGGSGLRAAVGLSEAGLKTACIS 40


>gi|12084636|pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor Dimethylglycine
 gi|12084637|pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor Dimethylglycine
 gi|12084638|pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methytelluro]acetate
 gi|12084639|pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methytelluro]acetate
 gi|12084640|pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methylseleno]cetate
 gi|12084641|pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
          Inhibitor [methylseleno]cetate
 gi|23200325|pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 gi|23200326|pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 gi|88192000|pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 gi|88192001|pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 gi|93279953|pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 gi|93279954|pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
          Flavinylated Amine Oxidizing Enzyme
 gi|126030560|pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
          Substrate Analogue Inhibitor 2-Fuoric Acid At 1.3 A
          Resolution.
 gi|126030561|pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
          Substrate Analogue Inhibitor 2-Fuoric Acid At 1.3 A
          Resolution
          Length = 389

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 3  HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 47


>gi|23200321|pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 gi|23200322|pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 gi|23200323|pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
 gi|23200324|pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
          Sarcosine Oxidase
          Length = 389

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DVIV+G G  G  A    AK G  T L+            N +  G 
Sbjct: 3  HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV----DAFDPPHTNGSHHGD 47


>gi|83954093|ref|ZP_00962813.1| hypothetical protein NAS141_17344 [Sulfitobacter sp. NAS-14.1]
 gi|83841130|gb|EAP80300.1| hypothetical protein NAS141_17344 [Sulfitobacter sp. NAS-14.1]
          Length = 434

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++  DV V+GGG+ G  AA   A+ G    L+  +    G+   N   G LG G  V E 
Sbjct: 34  DQRADVCVVGGGYTGLSAALHLAQAGRRVVLVEAQRVGFGASGRNG--GQLGSGQRV-EQ 90

Query: 63  DALDGLMGRVA 73
           DAL+ ++GR A
Sbjct: 91  DALEKMVGRDA 101


>gi|332977244|gb|EGK14039.1| dihydrolipoyl dehydrogenase [Psychrobacter sp. 1501(2011)]
          Length = 485

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YD++VIGGG  G EAA  A +LG S A I
Sbjct: 1  MKDNYDLVVIGGGPGGYEAAIRAGQLGMSVACI 33


>gi|322433679|ref|YP_004215891.1| dihydrolipoamide dehydrogenase [Acidobacterium sp. MP5ACTX9]
 gi|321161406|gb|ADW67111.1| dihydrolipoamide dehydrogenase [Acidobacterium sp. MP5ACTX9]
          Length = 489

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M +  +D++V+GGG AG      AA+LG   ALI  KT  +G
Sbjct: 1  MSDTIFDLVVVGGGPAGYTCGIRAAQLGLKVALIE-KTDKLG 41


>gi|299770285|ref|YP_003732311.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter sp. DR1]
 gi|298700373|gb|ADI90938.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter sp. DR1]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSETQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|262279022|ref|ZP_06056807.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          calcoaceticus RUH2202]
 gi|262259373|gb|EEY78106.1| pyruvate/2-oxoglutarate dehydrogenase complex [Acinetobacter
          calcoaceticus RUH2202]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSETQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|260467452|ref|ZP_05813622.1| monooxygenase FAD-binding [Mesorhizobium opportunistum WSM2075]
 gi|259028788|gb|EEW30094.1| monooxygenase FAD-binding [Mesorhizobium opportunistum WSM2075]
          Length = 413

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++D IVIG G AG  AA   A+ G S A++
Sbjct: 6  THDAIVIGAGPAGTSAALTLARHGWSVAIV 35


>gi|269123970|ref|YP_003306547.1| dihydrolipoamide dehydrogenase [Streptobacillus moniliformis DSM
           12112]
 gi|268315296|gb|ACZ01670.1| dihydrolipoamide dehydrogenase [Streptobacillus moniliformis DSM
           12112]
          Length = 567

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIGGG AG  AA  A++LG   AL+
Sbjct: 112 YDVVVIGGGPAGYVAAIKASQLGGKVALV 140


>gi|223038894|ref|ZP_03609186.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
 gi|222879867|gb|EEF14956.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
          Length = 516

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  +DV+++G G AG  A   AA+ G    +       +G +  N  I G
Sbjct: 40 FDEEWDVVIVGSGFAGLAAGITAAEKGNKVLI----LEKMGRIGGNSVING 86


>gi|163853889|ref|YP_001641932.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium extorquens PA1]
 gi|163665494|gb|ABY32861.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium extorquens PA1]
          Length = 406

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           +VIGGG  G EAA   A+LG  T LI H    +     +          LVR  ++A   
Sbjct: 150 VVIGGGLLGLEAAVGLARLGVDTTLI-HVMDRVMERQLD-----HAAARLVRTAMEARGV 203

Query: 68  LMGRVADAAGIQ----FRVLNVKKGPAVRGP 94
            +   AD A I+       L +K G  +   
Sbjct: 204 KVMLSADTAAIEGDGRVERLRMKDGSVIPAD 234


>gi|254372663|ref|ZP_04988152.1| L-aspartate oxidase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570390|gb|EDN36044.1| L-aspartate oxidase [Francisella novicida GA99-3549]
          Length = 495

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKADKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|320105257|ref|YP_004180847.1| dihydrolipoamide dehydrogenase [Terriglobus saanensis SP1PR4]
 gi|319923778|gb|ADV80853.1| dihydrolipoamide dehydrogenase [Terriglobus saanensis SP1PR4]
          Length = 472

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M +  YD++VIGGG AG   A  A++ G  TALI      +G
Sbjct: 1  MADTIYDLVVIGGGPAGYSCAIRASQYGLKTALIETS-DKLG 41


>gi|304398943|ref|ZP_07380813.1| FAD dependent oxidoreductase [Pantoea sp. aB]
 gi|304353647|gb|EFM18024.1| FAD dependent oxidoreductase [Pantoea sp. aB]
          Length = 425

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  L+
Sbjct: 27 DVVVIGGGFTGVSAALNLARRGISVVLL 54


>gi|183980539|ref|YP_001848830.1| succinate dehydrogenase (iron-sulfur subunit), SdhA_1
          [Mycobacterium marinum M]
 gi|183173865|gb|ACC38975.1| succinate dehydrogenase (iron-sulfur subunit), SdhA_1
          [Mycobacterium marinum M]
          Length = 642

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|225430758|ref|XP_002266737.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735155|emb|CBI17517.3| unnamed protein product [Vitis vinifera]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  + +D +VIG GH G  AAA  A+ G S A++
Sbjct: 16 LKEKKWDALVIGAGHNGLTAAAYLARSGLSVAVL 49


>gi|118616890|ref|YP_905222.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          ulcerans Agy99]
 gi|118569000|gb|ABL03751.1| succinate dehydrogenase (iron-sulfur subunit), SdhA_1
          [Mycobacterium ulcerans Agy99]
          Length = 642

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|115940653|ref|XP_001191487.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 348

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA-------IGGLGKG 56
           +VI++G G  G   A V A+ G    +I         I      P        +G     
Sbjct: 18  EVIIVGSGILGSAMATVLARDGRKVTVIERDMKEPDRIVGELFQPGGRQALTELGLGDCA 77

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
               EI     ++        I F+    K G           R  + +++++  +++EN
Sbjct: 78  SGFEEIRMDGFVIYDPITKEPIDFQYPKDKAGKIQPATCFHHGR--FVMSLRKAAMAEEN 135

Query: 117 LDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
           +  I+G V     EK  I  +       Q+  ++R    ++  GTF +  
Sbjct: 136 VTYIEGTVTTIVEEKGRIVGVEYKKKGQQEKEILRAPLTIVADGTFSKFR 185


>gi|87308874|ref|ZP_01091013.1| putative reductase [Blastopirellula marina DSM 3645]
 gi|87288585|gb|EAQ80480.1| putative reductase [Blastopirellula marina DSM 3645]
          Length = 307

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +SYD +VIGGG AG  AA V  +      L+
Sbjct: 5  LRQSYDAVVIGGGPAGLSAALVLGRACRQVLLV 37


>gi|167038536|ref|YP_001666114.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038722|ref|YP_001661707.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter sp. X514]
 gi|256751406|ref|ZP_05492285.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913693|ref|ZP_07131010.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter sp. X561]
 gi|307723292|ref|YP_003903043.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter sp. X513]
 gi|320116932|ref|YP_004187091.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166852962|gb|ABY91371.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoanaerobacter sp. X514]
 gi|166857370|gb|ABY95778.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749788|gb|EEU62813.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890378|gb|EFK85523.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter sp. X561]
 gi|307580353|gb|ADN53752.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter sp. X513]
 gi|319930023|gb|ADV80708.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YDV+VIGGG AG  AA    +    T LI    
Sbjct: 8  YDVVVIGGGPAGMTAAIYCGRARLKTLLIEKSL 40


>gi|322229354|dbj|BAJ72744.1| tetrahydrodaidzein reductase [Lactococcus garvieae]
 gi|322229359|dbj|BAJ72747.1| tetrahydrodaidzein reductase [Lactococcus garvieae]
          Length = 486

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
           +  YD++V+GGG +G  AA +AA+ G    ++     T
Sbjct: 4  FDVEYDLVVVGGGASGKSAALIAAREGKRVVVLEKMPET 42


>gi|317499453|ref|ZP_07957719.1| FAD binding domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316893227|gb|EFV15443.1| FAD binding domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|313608584|gb|EFR84459.1| alanine dehydrogenase [Listeria monocytogenes FSL F2-208]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|291551002|emb|CBL27264.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Ruminococcus torques L2-14]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|291520923|emb|CBK79216.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Coprococcus catus GD/7]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|289422852|ref|ZP_06424685.1| succinate dehydrogenase flavoprotein subunit [Peptostreptococcus
          anaerobius 653-L]
 gi|289156762|gb|EFD05394.1| succinate dehydrogenase flavoprotein subunit [Peptostreptococcus
          anaerobius 653-L]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|284801970|ref|YP_003413835.1| hypothetical protein LM5578_1725 [Listeria monocytogenes 08-5578]
 gi|284995112|ref|YP_003416880.1| hypothetical protein LM5923_1677 [Listeria monocytogenes 08-5923]
 gi|284057532|gb|ADB68473.1| hypothetical protein LM5578_1725 [Listeria monocytogenes 08-5578]
 gi|284060579|gb|ADB71518.1| hypothetical protein LM5923_1677 [Listeria monocytogenes 08-5923]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|317053024|ref|YP_004119378.1| amine oxidase [Pantoea sp. At-9b]
 gi|316953351|gb|ADU72822.1| amine oxidase [Pantoea sp. At-9b]
          Length = 478

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M    +DVIVIGGG +GC AA             TH+ 
Sbjct: 1  MEVTDFDVIVIGGGPSGCSAAWELRDRNILVLEKTHRL 38


>gi|255348937|ref|ZP_05380944.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 70]
 gi|255503476|ref|ZP_05381866.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis 70s]
 gi|255507154|ref|ZP_05382793.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis D(s)2923]
 gi|289525602|emb|CBJ15080.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis Sweden2]
 gi|296435162|gb|ADH17340.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis E/150]
 gi|296438882|gb|ADH21035.1| dihydrolipoamide dehydrogenase [Chlamydia trachomatis E/11023]
          Length = 465

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           +N ++D +VIG G  G  AA  AA+ G  TALI  K    G+     C P+   L    +
Sbjct: 1   MNEAFDCVVIGAGPGGYVAAITAAQAGLKTALIE-KREAGGTCLNRGCIPSKALLAGAEV 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           V +I        R AD  GI     ++   PA+   +    R + R  +   I S + + 
Sbjct: 60  VTQI--------RHADQFGIHVEGFSINY-PAMVQRKDSVVRSI-RDGLNGLIRSNK-IT 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
           V  G  +  ++ +  I     ++ S+I+  +++L TG+  R  
Sbjct: 109 VFSGRGSLISSTEVKILG---ENPSVIKAHSIILATGSEPRAF 148


>gi|255028539|ref|ZP_05300490.1| hypothetical protein LmonL_03831 [Listeria monocytogenes LO28]
          Length = 344

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 143 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 180


>gi|253578325|ref|ZP_04855597.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850643|gb|EES78601.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|217964273|ref|YP_002349951.1| alanine dehydrogenase [Listeria monocytogenes HCC23]
 gi|217333543|gb|ACK39337.1| alanine dehydrogenase [Listeria monocytogenes HCC23]
 gi|307571160|emb|CAR84339.1| alanine dehydrogenase [Listeria monocytogenes L99]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|254452067|ref|ZP_05065504.1| dihydrolipoyl dehydrogenase [Octadecabacter antarcticus 238]
 gi|198266473|gb|EDY90743.1| dihydrolipoyl dehydrogenase [Octadecabacter antarcticus 238]
          Length = 472

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   H++ 
Sbjct: 13 SYDVIIIGSGPGGYVCAIRCAQLGLKTAVVEGR-DTLGGTCLNVGCIPSKALLHASHMLH 71

Query: 61 EID---ALDGLMGR 71
          E     A  GL G+
Sbjct: 72 EAQHNFAAMGLKGK 85


>gi|197302326|ref|ZP_03167385.1| hypothetical protein RUMLAC_01055 [Ruminococcus lactaris ATCC
          29176]
 gi|197298757|gb|EDY33298.1| hypothetical protein RUMLAC_01055 [Ruminococcus lactaris ATCC
          29176]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|190571293|ref|YP_001975651.1| lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3
           component [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018690|ref|ZP_03334498.1| lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3
           component [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357565|emb|CAQ55004.1| lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3
           component [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995641|gb|EEB56281.1| lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3
           component [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 461

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLV 59
             YD+ VIG G  G  AA  AA+LG  TA++  K   +G +     C P    L    + 
Sbjct: 2   NEYDITVIGSGPGGYIAAIRAAQLGFKTAIVE-KEENLGGICLNWGCIPTKSLLRASEVY 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           R I   +    +V DA+     ++   +    +                  ++ + N+ V
Sbjct: 61  RLIRRSEEFGIKVKDASFNIQSMVKYSRNVVGKLSSG-----------VEYLMKKNNIKV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            QG   G       I  +  +    I    ++L TG   R
Sbjct: 110 HQG--FGKLAGNRTIKILNDKKEEEISSKHIILATGVRAR 147


>gi|167766622|ref|ZP_02438675.1| hypothetical protein CLOSS21_01128 [Clostridium sp. SS2/1]
 gi|167711745|gb|EDS22324.1| hypothetical protein CLOSS21_01128 [Clostridium sp. SS2/1]
 gi|291558640|emb|CBL37440.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [butyrate-producing bacterium SSC/2]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+IG G AG  AA  AA+ G +  L++
Sbjct: 5  IIIIGAGLAGLSAALQAAENGCNVKLVS 32


>gi|167583944|ref|ZP_02376332.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          ubonensis Bu]
          Length = 591

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVCVLS 42


>gi|158423658|ref|YP_001524950.1| putative oxidoreductase [Azorhizobium caulinodans ORS 571]
 gi|158330547|dbj|BAF88032.1| putative oxidoreductase [Azorhizobium caulinodans ORS 571]
          Length = 426

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV ++GGG  G EAA   AK GA   ++   +   G+   N   GG     L     A 
Sbjct: 26  YDVAIVGGGFTGLEAARRLAKAGARVVVLEGGSIGSGASGRN---GGHLNNGLAHSYLAA 82

Query: 66  DGLMGRVADAAGIQFRVLNVK 86
              +G  A+ A   +R  +  
Sbjct: 83  KSHLG--AERAATLYRAFDAA 101


>gi|154175044|ref|YP_001408579.1| Tat pathway signal sequence domain-containing protein
          [Campylobacter curvus 525.92]
 gi|112803894|gb|EAU01238.1| Tat (twin-arginine translocation) pathway signal sequence domain
          protein [Campylobacter curvus 525.92]
          Length = 174

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  YD I+IG G +G  AA  A+K G+   +       +G +  N  I G
Sbjct: 37 FDEQYDAIIIGSGISGLVAALKASKRGSKVLV----IEKMGRIGGNSVING 83


>gi|123445416|ref|XP_001311468.1| Pyridine nucleotide-disulphide oxidoreductase family protein
          [Trichomonas vaginalis G3]
 gi|121893279|gb|EAX98538.1| Pyridine nucleotide-disulphide oxidoreductase family protein
          [Trichomonas vaginalis G3]
          Length = 346

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YDVI++G G AG  AA  +A+    T +     
Sbjct: 44 YDVIILGSGPAGSTAALYSARAALKTLVFHGHL 76


>gi|116873008|ref|YP_849789.1| alanine dehydrogenase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741886|emb|CAK21010.1| alanine dehydrogenase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|86360544|ref|YP_472432.1| mercuric reductase [Rhizobium etli CFN 42]
 gi|86284646|gb|ABC93705.1| probable mercury(II) reductase protein [Rhizobium etli CFN 42]
          Length = 453

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 17/99 (17%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTS-----TIGSMSCNPAIGGLGK 55
          +S+D IVIG G AG     +AA++   G   ALI  K         G M     +     
Sbjct: 2  KSFDAIVIGAGQAG---PFLAARMVEKGMKVALIERKFLGGTCVNAGCMPTKTLVASARA 58

Query: 56 GHLVREIDALD----GLMGRVAD--AAGIQFRVLNVKKG 88
           H+ R   A      G +        A  +   +N +KG
Sbjct: 59 AHVARSGAAYGVNIPGEIAIDMKVVRARAETVTMNARKG 97


>gi|46907810|ref|YP_014199.1| alanine dehydrogenase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224180|ref|YP_002758287.1| alanine dehydrogenase [Listeria monocytogenes Clip81459]
 gi|254992101|ref|ZP_05274291.1| alanine dehydrogenase [Listeria monocytogenes FSL J2-064]
 gi|290894452|ref|ZP_06557411.1| alanine dehydrogenase [Listeria monocytogenes FSL J2-071]
 gi|46881079|gb|AAT04376.1| alanine dehydrogenase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876642|emb|CAS05351.1| Putative alanine dehydrogenase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|290555990|gb|EFD89545.1| alanine dehydrogenase [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|304320527|ref|YP_003854170.1| dihydrolipoamide dehydrogenase [Parvularcula bermudensis HTCC2503]
 gi|303299429|gb|ADM09028.1| dihydrolipoamide dehydrogenase [Parvularcula bermudensis HTCC2503]
          Length = 493

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 46/156 (29%), Gaps = 23/156 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLVRE 61
           DV +IG G AG  A   A + GA T LI         + IG M     I      H  R 
Sbjct: 27  DVAIIGAGTAGISAERSARRQGAQTLLIDPHFAGTVCARIGCMPSKLLIAAAQAAHGART 86

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                   G V        R             R +A R+ +   ++    +  +   ++
Sbjct: 87  AGPFGIRGGEVRVDGAAVMR-------------RVRALRDEFVAGVKDSFEALPDGTTVK 133

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
                            + D   +     VL TG+ 
Sbjct: 134 AAAHFTGPNYMT-----LDDGRRLSARAFVLATGSH 164


>gi|120598393|ref|YP_962967.1| flavocytochrome c [Shewanella sp. W3-18-1]
 gi|146293528|ref|YP_001183952.1| flavocytochrome c [Shewanella putrefaciens CN-32]
 gi|120558486|gb|ABM24413.1| flavocytochrome c [Shewanella sp. W3-18-1]
 gi|145565218|gb|ABP76153.1| flavocytochrome c [Shewanella putrefaciens CN-32]
          Length = 517

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           + +   DV+V+G G AG  AA  A + G S  ++      +     N  I G        
Sbjct: 43  VFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVV----DKMPVFGGNSTINGGAMAVAGS 98

Query: 61  EIDALDGLMGRVADAAGIQFRVLN 84
           E+    G+   V +      R   
Sbjct: 99  ELQKQAGIKDSVDEMVADMMRAGR 122


>gi|47093441|ref|ZP_00231205.1| alanine dehydrogenase [Listeria monocytogenes str. 4b H7858]
 gi|254824362|ref|ZP_05229363.1| alanine dehydrogenase [Listeria monocytogenes FSL J1-194]
 gi|254852202|ref|ZP_05241550.1| alanine dehydrogenase [Listeria monocytogenes FSL R2-503]
 gi|254931519|ref|ZP_05264878.1| alanine dehydrogenase [Listeria monocytogenes HPB2262]
 gi|255521294|ref|ZP_05388531.1| alanine dehydrogenase [Listeria monocytogenes FSL J1-175]
 gi|300765995|ref|ZP_07075966.1| alanine dehydrogenase [Listeria monocytogenes FSL N1-017]
 gi|47018169|gb|EAL08938.1| alanine dehydrogenase [Listeria monocytogenes str. 4b H7858]
 gi|258605508|gb|EEW18116.1| alanine dehydrogenase [Listeria monocytogenes FSL R2-503]
 gi|293583072|gb|EFF95104.1| alanine dehydrogenase [Listeria monocytogenes HPB2262]
 gi|293593596|gb|EFG01357.1| alanine dehydrogenase [Listeria monocytogenes FSL J1-194]
 gi|300513313|gb|EFK40389.1| alanine dehydrogenase [Listeria monocytogenes FSL N1-017]
 gi|328465077|gb|EGF36351.1| alanine dehydrogenase [Listeria monocytogenes 1816]
 gi|332312021|gb|EGJ25116.1| Alanine dehydrogenase 2 [Listeria monocytogenes str. Scott A]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|15607389|ref|NP_214762.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis H37Rv]
 gi|15839629|ref|NP_334666.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis CDC1551]
 gi|31791426|ref|NP_853919.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium bovis
          AF2122/97]
 gi|121636161|ref|YP_976384.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148660013|ref|YP_001281536.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis H37Ra]
 gi|148821442|ref|YP_001286196.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis F11]
 gi|167968971|ref|ZP_02551248.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis H37Ra]
 gi|215406246|ref|ZP_03418427.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 02_1987]
 gi|215409738|ref|ZP_03418546.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 94_M4241A]
 gi|215425464|ref|ZP_03423383.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T92]
 gi|215448535|ref|ZP_03435287.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T85]
 gi|218755989|ref|ZP_03534785.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis GM 1503]
 gi|224988634|ref|YP_002643321.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253797172|ref|YP_003030173.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis KZN 1435]
 gi|254233626|ref|ZP_04926952.1| hypothetical protein TBCG_00247 [Mycobacterium tuberculosis C]
 gi|254366694|ref|ZP_04982738.1| hypothetical succinate dehydrogenase [iron-sulfur subunit]
          (succinic dehydrogenase) [Mycobacterium tuberculosis
          str. Haarlem]
 gi|254549189|ref|ZP_05139636.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis '98-R604 INH-RIF-EM']
 gi|260185112|ref|ZP_05762586.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis CPHL_A]
 gi|260199246|ref|ZP_05766737.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T46]
 gi|260203392|ref|ZP_05770883.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis K85]
 gi|289441625|ref|ZP_06431369.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis T46]
 gi|289445781|ref|ZP_06435525.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis CPHL_A]
 gi|289552501|ref|ZP_06441711.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis KZN 605]
 gi|289572827|ref|ZP_06453054.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis K85]
 gi|289748018|ref|ZP_06507396.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 02_1987]
 gi|289748731|ref|ZP_06508109.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis T92]
 gi|289760354|ref|ZP_06519732.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T85]
 gi|289764365|ref|ZP_06523743.1| succinate dehydrogenase [iron-sulfur subunit] (succinic
          dehydrogenase) [Mycobacterium tuberculosis GM 1503]
 gi|294994723|ref|ZP_06800414.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 210]
 gi|297632729|ref|ZP_06950509.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis KZN 4207]
 gi|297729703|ref|ZP_06958821.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis KZN R506]
 gi|298523716|ref|ZP_07011125.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306774339|ref|ZP_07412676.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu001]
 gi|306779081|ref|ZP_07417418.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu002]
 gi|306782870|ref|ZP_07421192.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu003]
 gi|306787238|ref|ZP_07425560.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu004]
 gi|306791794|ref|ZP_07430096.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu005]
 gi|306795836|ref|ZP_07434138.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu006]
 gi|306801834|ref|ZP_07438502.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu008]
 gi|306806045|ref|ZP_07442713.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu007]
 gi|306970441|ref|ZP_07483102.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu009]
 gi|306974672|ref|ZP_07487333.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu010]
 gi|307082381|ref|ZP_07491551.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu011]
 gi|307082724|ref|ZP_07491837.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu012]
 gi|313657029|ref|ZP_07813909.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis KZN V2475]
 gi|2909452|emb|CAA17340.1| PROBABLE SUCCINATE DEHYDROGENASE [IRON-SULFUR SUBUNIT] (SUCCINIC
          DEHYDROGENASE) [Mycobacterium tuberculosis H37Rv]
 gi|13879747|gb|AAK44480.1| FAD flavoprotein oxidase, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31617011|emb|CAD93118.1| PROBABLE SUCCINATE DEHYDROGENASE [IRON-SULFUR SUBUNIT] (SUCCINIC
          DEHYDROGENASE) [Mycobacterium bovis AF2122/97]
 gi|121491808|emb|CAL70270.1| Probable succinate dehydrogenase [iron-sulfur subunit]
          [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124603419|gb|EAY61694.1| hypothetical protein TBCG_00247 [Mycobacterium tuberculosis C]
 gi|134152206|gb|EBA44251.1| hypothetical succinate dehydrogenase [iron-sulfur subunit]
          (succinic dehydrogenase) [Mycobacterium tuberculosis
          str. Haarlem]
 gi|148504165|gb|ABQ71974.1| succinate dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148719969|gb|ABR04594.1| hypothetical succinate dehydrogenase iron-sulfur subunit
          (succinic dehydrogenase) [Mycobacterium tuberculosis
          F11]
 gi|224771747|dbj|BAH24553.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253318675|gb|ACT23278.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis KZN 1435]
 gi|289414544|gb|EFD11784.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis T46]
 gi|289418739|gb|EFD15940.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis CPHL_A]
 gi|289437133|gb|EFD19626.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis KZN 605]
 gi|289537258|gb|EFD41836.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis K85]
 gi|289688546|gb|EFD56034.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 02_1987]
 gi|289689318|gb|EFD56747.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis T92]
 gi|289711871|gb|EFD75887.1| succinate dehydrogenase [iron-sulfur subunit] (succinic
          dehydrogenase) [Mycobacterium tuberculosis GM 1503]
 gi|289715918|gb|EFD79930.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis T85]
 gi|298493510|gb|EFI28804.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308217171|gb|EFO76570.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu001]
 gi|308327930|gb|EFP16781.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu002]
 gi|308332389|gb|EFP21240.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu003]
 gi|308336140|gb|EFP24991.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu004]
 gi|308339772|gb|EFP28623.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu005]
 gi|308343777|gb|EFP32628.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu006]
 gi|308347497|gb|EFP36348.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu007]
 gi|308351396|gb|EFP40247.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu008]
 gi|308352124|gb|EFP40975.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu009]
 gi|308356074|gb|EFP44925.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu010]
 gi|308360029|gb|EFP48880.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu011]
 gi|308367594|gb|EFP56445.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis SUMu012]
 gi|323717239|gb|EGB26448.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis CDC1551A]
 gi|326906004|gb|EGE52937.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis W-148]
 gi|328456959|gb|AEB02382.1| succinate dehydrogenase iron-sulfur subunit [Mycobacterium
          tuberculosis KZN 4207]
          Length = 646

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|16803619|ref|NP_465104.1| hypothetical protein lmo1579 [Listeria monocytogenes EGD-e]
 gi|47096792|ref|ZP_00234374.1| alanine dehydrogenase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499764|ref|ZP_03668113.1| hypothetical protein LmonF1_08769 [Listeria monocytogenes Finland
           1988]
 gi|224501481|ref|ZP_03669788.1| hypothetical protein LmonFR_03022 [Listeria monocytogenes FSL
           R2-561]
 gi|254828186|ref|ZP_05232873.1| alanine dehydrogenase [Listeria monocytogenes FSL N3-165]
 gi|254831980|ref|ZP_05236635.1| hypothetical protein Lmon1_11525 [Listeria monocytogenes 10403S]
 gi|254898254|ref|ZP_05258178.1| hypothetical protein LmonJ_00525 [Listeria monocytogenes J0161]
 gi|254912253|ref|ZP_05262265.1| alanine dehydrogenase [Listeria monocytogenes J2818]
 gi|254936580|ref|ZP_05268277.1| alanine dehydrogenase [Listeria monocytogenes F6900]
 gi|16411008|emb|CAC99657.1| lmo1579 [Listeria monocytogenes EGD-e]
 gi|47014825|gb|EAL05776.1| alanine dehydrogenase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600573|gb|EEW13898.1| alanine dehydrogenase [Listeria monocytogenes FSL N3-165]
 gi|258609176|gb|EEW21784.1| alanine dehydrogenase [Listeria monocytogenes F6900]
 gi|293590230|gb|EFF98564.1| alanine dehydrogenase [Listeria monocytogenes J2818]
          Length = 370

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|331007435|ref|ZP_08330613.1| Soluble pyridine nucleotide transhydrogenase [gamma
          proteobacterium IMCC1989]
 gi|330418757|gb|EGG93245.1| Soluble pyridine nucleotide transhydrogenase [gamma
          proteobacterium IMCC1989]
          Length = 474

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             +D+IVIG G AG ++A  AAKLG   AL+
Sbjct: 10 EEKFDLIVIGSGPAGQKSAVQAAKLGKRVALV 41


>gi|323138921|ref|ZP_08073983.1| glutathione-disulfide reductase [Methylocystis sp. ATCC 49242]
 gi|322395865|gb|EFX98404.1| glutathione-disulfide reductase [Methylocystis sp. ATCC 49242]
          Length = 457

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M +  YD+IVIG G  G  AA VAA  GA  A+
Sbjct: 1  MSDFDYDLIVIGAGSGGVRAARVAASHGAKVAI 33


>gi|240141345|ref|YP_002965825.1| putative FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase; putative nitrate or nitrite reductase
           subunit [Methylobacterium extorquens AM1]
 gi|240011322|gb|ACS42548.1| putative FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase; putative nitrate or nitrite reductase
           subunit [Methylobacterium extorquens AM1]
          Length = 393

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           +VIGGG  G EAA   A+LG  T LI H    +     +          LVR  ++A   
Sbjct: 137 VVIGGGLLGLEAAVGLARLGVDTTLI-HVMDRVMERQLD-----HAAARLVRTAMEARGV 190

Query: 68  LMGRVADAAGIQ----FRVLNVKKGPAVRGP 94
            +   AD A I+       L +K G  +   
Sbjct: 191 KVMLSADTAAIEGDGRVERLRMKDGSVIPAD 221


>gi|224052940|ref|XP_002187874.1| PREDICTED: similar to EIF6 protein [Taeniopygia guttata]
          Length = 1480

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 683 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 742

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 743 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 795

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 796 NQEKKIDYFERAKRLEEIPL 815


>gi|167759212|ref|ZP_02431339.1| hypothetical protein CLOSCI_01559 [Clostridium scindens ATCC 35704]
 gi|167663086|gb|EDS07216.1| hypothetical protein CLOSCI_01559 [Clostridium scindens ATCC 35704]
          Length = 298

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 42/154 (27%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+I+IG G AG  A   A   G  T +I                          E +A+
Sbjct: 2   YDIIIIGAGPAGISAGIYAVSRGKKTVII--------------------------EKNAV 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++G+V+      +  +   +  A    R +          ++ + +   +++I   V 
Sbjct: 36  GGIIGKVS--TVTHYSAIVPGETGATFAKRME----------RQALEA--GVEIIYENVE 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               E + I +I    N       ++L  GT  R
Sbjct: 82  KVTLEGD-IKTIRTSRNH-YEAPKIILANGTTPR 113


>gi|254252101|ref|ZP_04945419.1| hypothetical protein BDAG_01314 [Burkholderia dolosa AUO158]
 gi|124894710|gb|EAY68590.1| hypothetical protein BDAG_01314 [Burkholderia dolosa AUO158]
          Length = 441

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 23/190 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG--------GLGKGHL 58
           DV ++G G AG  AA  AA LG    L+      +G  + N  IG        G  +  +
Sbjct: 30  DVCIVGAGIAGTSAALEAAALGRKVVLVD-SLPALGGQAVNSIIGTFCGLFSNGPKRFQV 88

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              I   DG++  + +   + ++     +GP         D       +++++L    + 
Sbjct: 89  THGI--ADGILHDLGEKGALHYK-----EGP--LTTVVLYDEVALARWIEQKMLD-AGIT 138

Query: 119 VIQGEVA-GFNTEKNIIS--SIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+ G V      E   +    +  +   + I     V  +G      +     + P   +
Sbjct: 139 VVLGAVLRDVVREGRRVRELDVATRYGDVRIAADGFVDASGDAALAWLAGFDCQEPETPI 198

Query: 175 GDSPSNSLFN 184
             +    L N
Sbjct: 199 RGTQMIVLEN 208


>gi|115401948|ref|XP_001216562.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190503|gb|EAU32203.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 507

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-----------G 54
           +DVI+IG G+AG  AA    K+G  T LI  +   IG  + +  + G             
Sbjct: 46  WDVIIIGAGYAGLVAARDLVKVGKKTLLIEAR-DRIGGRTWSAEVDGTTYEMGGTWVSHV 104

Query: 55  KGHLVREIDALD---GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
            G L  E+        +     D  G  + +L+   G         A        +   I
Sbjct: 105 HGRLFAEMQRYGLQDEVTLTRTDNGGCSYFMLDTGSGSRKFSLEKAAQMSARAWRIFINI 164

Query: 112 LSQENLDV 119
              E  D+
Sbjct: 165 DGNEGRDI 172


>gi|50119852|ref|YP_049019.1| putative flavoprotein subunit of a reductase [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610378|emb|CAG73822.1| putative flavoprotein subunit of a reductase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 509

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 39/209 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S D+++IG G AG  A   +A+ GA   L+  +    G+ +    I         R+
Sbjct: 32  IPKSADIVIIGAGAAGTSATMASAEKGAKIVLLEKQPIVGGTGNFAEGIFAANSSMQKRQ 91

Query: 62  IDALDGLMGRVADAAGIQFRV--------LNVKKGPAVRGPRTQADRELY---------- 103
              +   M          +          +N          +++  +  Y          
Sbjct: 92  GIIVTPDMAFKTIMDYSHWMANPFVVRAFVNRSADTIEWV-KSKGIKFEYIGPGGPGGML 150

Query: 104 --------------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIR- 146
                               +  S +   +++        +   ++ ++ Q  D +  + 
Sbjct: 151 TWHVIDGPGHGRHLIKTFHEQFKSMDVTTLVKTAGKDLVVKDGKVTGVIAQDSDGNTFQI 210

Query: 147 -CSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
               V++ TG +          K  A   
Sbjct: 211 DAKAVIIATGGYANNK--EMLQKYAAFPD 237


>gi|118589|sp|P26829|DHNA_BACYN RecName: Full=NADH dehydrogenase; AltName: Full=Alkyl hydroperoxide
           reductase
 gi|80165|pir||JX0166 NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) - Bacillus
           sp. (strain YN-1)
 gi|216304|dbj|BAA01545.1| NADH dehydrogenase, alpha-2 subunit [Bacillus alcalophilus]
          Length = 519

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+V+GGG AG  +A  AA+ G  T ++ 
Sbjct: 209 FDVLVVGGGPAGASSAIYAARKGIRTGIVA 238


>gi|71027209|ref|XP_763248.1| succinate dehydrogenase flavoprotein subunit [Theileria parva
           strain Muguga]
 gi|68350201|gb|EAN30965.1| succinate dehydrogenase flavoprotein subunit, putative [Theileria
           parva]
          Length = 658

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 82/251 (32%), Gaps = 51/251 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGGL-- 53
           ++   YD IV+G G AG  +A   + LG  TA    L   ++ T+ +    N A+G +  
Sbjct: 25  VVTHDYDAIVVGAGGAGLRSALELSILGHKTACISKLFPTRSHTVAAQGGINAALGNMTE 84

Query: 54  ----------GKG------------------HLVREIDALDGLMGRVAD----AAGIQFR 81
                      KG                    V E++       R  D          +
Sbjct: 85  DDWRWHFYDTVKGSDWLGDQDSIYHMCKSAPEAVIELENFGVPFSRTEDGKIYQRAFGGQ 144

Query: 82  VLNVKKGPAVRGPRTQADRELYRL--AMQREILSQENLDVIQGEVAGFN---TEKNIISS 136
            LN  KG         ADR  + L   M    L       I+  +       TE  +I  
Sbjct: 145 SLNFGKGGQAYRCAAVADRTGHSLLHTMYSTCLKYNCSFFIEYFLLDLIKHPTENRVIGG 204

Query: 137 IVMQDNSM----IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS-PSNSLFNSFMKF-- 189
           I ++ ++M     R + VV+ TG F R         +  G    +     L N  M+F  
Sbjct: 205 IFLRMSNMELHVFRSNHVVIATGGFGRCYFSCTSAHMCTGDGNAAVSRLGLPNQDMEFVQ 264

Query: 190 DFDTGRLKTGT 200
              TG    G 
Sbjct: 265 FHPTGIYPAGC 275


>gi|270264509|ref|ZP_06192775.1| hypothetical protein SOD_h01760 [Serratia odorifera 4Rx13]
 gi|270041645|gb|EFA14743.1| hypothetical protein SOD_h01760 [Serratia odorifera 4Rx13]
          Length = 399

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DV+VIG G AG   AA A +LG    L+
Sbjct: 2  EQFDVVVIGAGAAGMFCAAEAGQLGCRVLLL 32


>gi|262049688|ref|ZP_06022555.1| hypothetical protein SAD30_1149 [Staphylococcus aureus D30]
 gi|259162231|gb|EEW46806.1| hypothetical protein SAD30_1149 [Staphylococcus aureus D30]
          Length = 482

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 50/303 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 44  KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIPSKTLVH--- 98

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +        LD  
Sbjct: 99  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEVN-LLDQH 155

Query: 121 QGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              V              +S++     + +   V  +TG           + +  G +  
Sbjct: 156 DDIVDSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI-- 213

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +    + F         L+ G     R D   + +  T+                 + 
Sbjct: 214 --ALEFASMFANLGSKVTVLERGESFMPREDQDVVAYGITD-----------------LE 254

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGD-------IKSYG--PRYCPSIEDKIVRF 285
           N+ I      TN+ET  +  +N   +   + D       + + G  P    ++E+  +  
Sbjct: 255 NKGIAL---HTNIETTELSSDNHHTTVHTNVDNFEADAVLLAIGRKPNTDLALENTDIEL 311

Query: 286 GER 288
           G+R
Sbjct: 312 GDR 314


>gi|240168472|ref|ZP_04747131.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          kansasii ATCC 12478]
          Length = 644

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           SYDV+VIG G AG  A   A + G   A++       G      A GG  
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|254425099|ref|ZP_05038817.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
          putative [Synechococcus sp. PCC 7335]
 gi|196192588|gb|EDX87552.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
          putative [Synechococcus sp. PCC 7335]
          Length = 475

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          ++  YD++VIGGG AG  AA+  A++ A  ALI    
Sbjct: 1  MSVEYDLVVIGGGSAGLVAASAGAQINAKVALIEKHL 37


>gi|170761475|ref|YP_001786646.1| thioredoxin-disulfide reductase [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169408464|gb|ACA56875.1| thioredoxin-disulfide reductase [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 313

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDVI+IG G AG  A   AA+  + T ++    +  G +     +           
Sbjct: 1  MENLYDVIIIGSGPAGLSAGLYAARARSKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    +  G Q +  NVK+
Sbjct: 60 GASLVARMEEQVEEFGAQRKKDNVKE 85


>gi|149203994|ref|ZP_01880962.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Roseovarius sp. TM1035]
 gi|149142436|gb|EDM30481.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Roseovarius sp. TM1035]
          Length = 659

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            + + V+V+G G AG EAA VAA+ G    L 
Sbjct: 383 EQVHTVLVVGAGPAGLEAARVAAERGHRVCLH 414


>gi|153954394|ref|YP_001395159.1| BfmBC [Clostridium kluyveri DSM 555]
 gi|219854985|ref|YP_002472107.1| hypothetical protein CKR_1642 [Clostridium kluyveri NBRC 12016]
 gi|146347275|gb|EDK33811.1| BfmBC [Clostridium kluyveri DSM 555]
 gi|219568709|dbj|BAH06693.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 455

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD+IVIG G  G  AA  AAK G  TA+I
Sbjct: 1  MAYKYDLIVIGTGPGGSAAALEAAKSGMKTAVI 33


>gi|221133523|ref|ZP_03559828.1| probable alkyl hydroperoxide reductase subunit F [Glaciecola sp.
           HTCC2999]
          Length = 519

 Score = 42.6 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           DV V+GGG AG  AA  AA+ G    ++ 
Sbjct: 218 DVTVLGGGPAGVSAAIYAARKGLKVTMVA 246


>gi|331000969|ref|ZP_08324606.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329569928|gb|EGG51685.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 510

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + +D+IVIG G AG  AA  A++ GA   L+  K   +G
Sbjct: 31 LGQQWDIIVIGSGLAGLSAALSASENGADRILVIEKLPVLG 71


>gi|307299461|ref|ZP_07579261.1| FAD dependent oxidoreductase [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306914860|gb|EFN45247.1| FAD dependent oxidoreductase [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 538

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD I++GGG AG  +AA  AK GA   L+   
Sbjct: 1  MTEIYDAIIVGGGIAGMTSAAYIAKHGARVLLLEKN 36


>gi|91795039|ref|YP_564690.1| HI0933-like protein [Shewanella denitrificans OS217]
 gi|91717041|gb|ABE56967.1| HI0933-like protein [Shewanella denitrificans OS217]
          Length = 398

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          + +DVI+IG G AG   A  A   G    L          +     I G G+ +
Sbjct: 2  KHHDVIIIGAGAAGLMCALTAGYRGRDVLL----LDNAKQLGRKILISGGGRSN 51


>gi|29828194|ref|NP_822828.1| squalene/phytoene dehydrogenase [Streptomyces avermitilis
          MA-4680]
 gi|29605296|dbj|BAC69363.1| squalene/phytoene dehydrogenase [Streptomyces avermitilis
          MA-4680]
          Length = 475

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALI 34
          +V+GGG AG  AA   A  G    L+
Sbjct: 23 VVVGGGLAGITAALALADAGVRVTLL 48


>gi|19551715|ref|NP_599717.1| oxidoreductase [Corynebacterium glutamicum ATCC 13032]
 gi|62389370|ref|YP_224772.1| monooxygenase, FAD-binding [Corynebacterium glutamicum ATCC
          13032]
 gi|21323237|dbj|BAB97865.1| Dehydrogenases (flavoproteins) [Corynebacterium glutamicum ATCC
          13032]
 gi|41324704|emb|CAF19186.1| MONOOXYGENASE, FAD-BINDING, PUTATIVE [Corynebacterium glutamicum
          ATCC 13032]
          Length = 424

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ ++DV++IG G +G  AA  AA+ G  T LI
Sbjct: 4  VSTTFDVLIIGAGPSGASAAVHAARTGLQTLLI 36


>gi|15237900|ref|NP_197802.1| SQP2; FAD binding / oxidoreductase/ squalene monooxygenase
           [Arabidopsis thaliana]
 gi|6685408|sp|O65403|ERG13_ARATH RecName: Full=Squalene monooxygenase 2; AltName: Full=Squalene
           epoxidase 2; Short=SE 2
 gi|3123329|emb|CAA06771.1| squalene epoxidase homologue [Arabidopsis thaliana]
 gi|10178162|dbj|BAB11574.1| squalene monooxygenase 2 (squalene epoxidase 2) (SE 2) [Arabidopsis
           thaliana]
 gi|332005878|gb|AED93261.1| Squalene monooxygenase 2 [Arabidopsis thaliana]
          Length = 516

 Score = 42.6 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 11/151 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPA---IGGLGKGHLV 59
           DVI++G G AG   A   AK G    +I          +G +        +  LG    +
Sbjct: 45  DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCL 104

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-RLAMQREILSQENLD 118
            +IDA +          G    +           P  +  R       ++++  S  N+ 
Sbjct: 105 EDIDAQE-AKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQ 163

Query: 119 VIQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
           + +G V     E+ ++  +         I  
Sbjct: 164 LEEGTVKSLIEEEGVVKGVTYKNSAGEEITA 194


>gi|297301944|ref|XP_001102472.2| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Macaca mulatta]
          Length = 1231

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 499 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 558

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 559 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 611

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 612 NQEKKIDYFERAKRLEEIPL 631


>gi|228952798|ref|ZP_04114868.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228806841|gb|EEM53390.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 447

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          I  ++D+ ++GGG AG  A+   AK G    ++            +   GG G      E
Sbjct: 11 IMNTFDIAIVGGGLAGLTASIYLAKAGRKVIVLE----------KSSQFGGRGMTTNKNE 60

Query: 62 IDALDGLMGRVADAAGIQFRVLN 84
          I     L        G  F   N
Sbjct: 61 I--CMNLGAHALYRGGAAFITFN 81


>gi|209521206|ref|ZP_03269929.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          H160]
 gi|209498348|gb|EDZ98480.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          H160]
          Length = 104

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RRFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|329663173|ref|NP_001193243.1| eukaryotic translation initiation factor 3 subunit A [Bos taurus]
 gi|297491022|ref|XP_002698584.1| PREDICTED: eukaryotic translation initiation factor 3, subunit A
           [Bos taurus]
 gi|296472593|gb|DAA14708.1| eukaryotic translation initiation factor 3, subunit A [Bos taurus]
          Length = 1376

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|56697204|ref|YP_167568.1| sarcosine oxidase alpha subunit family protein [Ruegeria pomeroyi
           DSS-3]
 gi|56678941|gb|AAV95607.1| sarcosine oxidase, alpha subunit family [Ruegeria pomeroyi DSS-3]
          Length = 1010

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG--------HL 58
           D++VIGGG AG +AA VAA  GA   LI     T       P  GG   G          
Sbjct: 172 DILVIGGGVAGLQAAKVAASSGARVLLIEQ---TAHWGGRAPVDGGTIDGLSPDEWVSRT 228

Query: 59  VREIDALDGLMGRVA 73
           + E++A+D +  R  
Sbjct: 229 LAELEAMDNVTLRAR 243


>gi|332978609|gb|EGK15313.1| old Yellow enzyme family NADH:flavin oxidoreductase [Psychrobacter
           sp. 1501(2011)]
          Length = 654

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIGGG AG EAA VAA  G    L 
Sbjct: 381 VVVIGGGPAGLEAARVAATKGHEVTLF 407


>gi|311031413|ref|ZP_07709503.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp. m3-13]
          Length = 586

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 26/169 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           VIV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 5   VIVVGGGLAGLMATIKVAEAGVPVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 64

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 65  FDDSVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 124

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                  Q+ L  +  +V      ++ +S +V +        +V+   G
Sbjct: 125 FAGATTGQQLLYALDEQV-----RRHEVSGLVTKYEGWEFLGSVIDDDG 168


>gi|312878966|ref|ZP_07738766.1| FAD dependent oxidoreductase [Aminomonas paucivorans DSM 12260]
 gi|310782257|gb|EFQ22655.1| FAD dependent oxidoreductase [Aminomonas paucivorans DSM 12260]
          Length = 381

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  R+ DVI++GGG  GC  A   AK G   AL    
Sbjct: 1  MHQRTADVIIVGGGVHGCAGAYELAKAGVKVALFEAN 37


>gi|225352635|ref|ZP_03743658.1| hypothetical protein BIFPSEUDO_04261 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225156829|gb|EEG70223.1| hypothetical protein BIFPSEUDO_04261 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 589

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIVIGGG AG  A    A+      ++
Sbjct: 7  YDVIVIGGGPAGLTAGLYLARARYRVLIL 35


>gi|218462327|ref|ZP_03502418.1| soluble pyridine nucleotide transhydrogenase [Rhizobium etli Kim
          5]
          Length = 371

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++   YD++V+G G AG   A  AAKLG    +I  
Sbjct: 17 LMMFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 52


>gi|187934345|ref|YP_001885567.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium botulinum B str. Eklund 17B]
 gi|187722498|gb|ACD23719.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium botulinum B str. Eklund 17B]
          Length = 430

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +    D+IV+G G AG   A  AA+LG    +I  K  
Sbjct: 1  MENMIDLIVVGAGPAGLMTAKRAAELGLKVTVIEIKKD 38


>gi|146308250|ref|YP_001188715.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Pseudomonas
           mendocina ymp]
 gi|205829032|sp|A4XXB7|MNMC_PSEMY RecName: Full=tRNA 5-methylaminomethyl-2-thiouridine biosynthesis
           bifunctional protein mnmC; Short=tRNA mnm(5)s(2)U
           biosynthesis bifunctional protein; Includes: RecName:
           Full=tRNA (mnm(5)s(2)U34)-methyltransferase; Includes:
           RecName: Full=FAD-dependent cmnm(5)s(2)U34
           oxidoreductase
 gi|145576451|gb|ABP85983.1| protein of unknown function DUF752 [Pseudomonas mendocina ymp]
          Length = 657

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIG G AGC  AA  A  G    L+          S NP       G L  ++ A   +
Sbjct: 259 VVIGAGLAGCATAASLAARGWRVTLLERHDDVAREASGNPQ------GVLYLKLSAHGTV 312

Query: 69  MGRVADAAGIQFRVL 83
           + R+  A     R L
Sbjct: 313 LSRLIVAGFGHTRRL 327


>gi|84684243|ref|ZP_01012145.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84667996|gb|EAQ14464.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Rhodobacterales
          bacterium HTCC2654]
          Length = 461

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G   A   A+LG  TA +  +  T+G    ++ C P+   L   H + 
Sbjct: 3  DYDVIVIGSGPGGYVCAIRCAQLGLKTACVEGR-DTLGGTCLNVGCIPSKALLHATHSLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFATMGLKGK 75


>gi|328876515|gb|EGG24878.1| putative CMF receptor CMFR1 [Dictyostelium fasciculatum]
          Length = 523

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 12/79 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREI 62
           YDVI IG G +G       A+ G   AL+  K           C  A+  + +  L RE+
Sbjct: 92  YDVITIGAGPSGSTLGYYLAREGRKVALLEKKKFPRDKF----CGDAVATMAQDIL-REM 146

Query: 63  DALDGLMGRVADAAGIQFR 81
               G+M  + D     F 
Sbjct: 147 ----GVMKELVDEDLGHFA 161


>gi|320094436|ref|ZP_08026215.1| electron transfer flavoprotein-quinone oxidoreductase FixC
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978610|gb|EFW10174.1| electron transfer flavoprotein-quinone oxidoreductase FixC
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 432

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 56/192 (29%), Gaps = 33/192 (17%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-- 62
            +DVIVIGGG AG   A   A  G    L+                GG+    ++ ++  
Sbjct: 6   DFDVIVIGGGVAGAVCAYTLAGQGREVLLV----ERGAEPGSKNLSGGVFYCRIMEKVFP 61

Query: 63  -------------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQR 109
                             L+   +      +     +   AV   R + D      A   
Sbjct: 62  DFVDAAPVERRITRNCVSLINEGSYVNIDYWDQRLSEPANAVTVLRAKLD------AWLL 115

Query: 110 EILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
           E   +  + V+ G +V     E   I  +       +R   VV   G      ++    +
Sbjct: 116 EQCEEAGVTVMPGVKVDSLIVEGEQIVGVR-AGEDELRSHVVVAADG------VNSFIAQ 168

Query: 169 IPAGRMGDSPSN 180
               R  +   +
Sbjct: 169 QAGIRAKEPMKH 180


>gi|223939000|ref|ZP_03630885.1| HI0933 family protein [bacterium Ellin514]
 gi|223892296|gb|EEF58772.1| HI0933 family protein [bacterium Ellin514]
          Length = 388

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +DVIVIGGG AG   A  A K G S  +          +     I G G+ +
Sbjct: 2  KFDVIVIGGGAAGLMCAIEAGKRGRSVVV----LDHAERLGKKILISGGGRCN 50


>gi|126734131|ref|ZP_01749878.1| geranylgeranyl reductase [Roseobacter sp. CCS2]
 gi|126716997|gb|EBA13861.1| geranylgeranyl reductase [Roseobacter sp. CCS2]
          Length = 395

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          +   YDV+V+G G +G  AA   A+ G   A
Sbjct: 1  MKMQYDVVVVGAGPSGATAAEDLARSGHKVA 31


>gi|120406456|ref|YP_956285.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
 gi|119959274|gb|ABM16279.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            V     + + ++ +   D S I   TVV+ TG + R  +    + +P
Sbjct: 172 AVTDLLVDGDRVTGVRTADGSEIFAGTVVVATGVWTRPFLARYGIDVP 219


>gi|87119440|ref|ZP_01075337.1| hypothetical protein MED121_05865 [Marinomonas sp. MED121]
 gi|86164916|gb|EAQ66184.1| hypothetical protein MED121_05865 [Marinomonas sp. MED121]
          Length = 662

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           V+VIG G AGC  A   A  G S  +    +   G  S N
Sbjct: 276 VLVIGAGLAGCHTARALANKGLSVDVWDTNSDIAGEASGN 315


>gi|332285777|ref|YP_004417688.1| hypothetical protein PT7_2524 [Pusillimonas sp. T7-7]
 gi|330429730|gb|AEC21064.1| hypothetical protein PT7_2524 [Pusillimonas sp. T7-7]
          Length = 413

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG AG  AA   A+ G    +       + S+     + G G  +L    +A   
Sbjct: 13 VAVIGGGPAGLMAAQTLARAGICVDVY----DAMPSVGRKFLLAGRGGLNLTHS-EASTA 67

Query: 68 LMGRVADAAGIQFRVLNVKKGPAVR 92
             R           L+     A+R
Sbjct: 68 FRARFGARTAQVSSWLDGFDAQALR 92


>gi|331701689|ref|YP_004398648.1| thioredoxin reductase [Lactobacillus buchneri NRRL B-30929]
 gi|329129032|gb|AEB73585.1| thioredoxin reductase [Lactobacillus buchneri NRRL B-30929]
          Length = 317

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV++IG G  G  AA  A++   S A+I
Sbjct: 1  MAKQYDVVIIGAGPGGMTAALYASRANLSVAMI 33


>gi|326802696|ref|YP_004320514.1| flavocytochrome c [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650236|gb|AEA00419.1| flavocytochrome c [Aerococcus urinae ACS-120-V-Col10a]
          Length = 449

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 64/206 (31%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  +YDVI+IG G AG  AA  A  LG  T +   KT  IG  +   + G        +E
Sbjct: 4   IKDAYDVIIIGSGGAGMTAAITAHDLGLETVIFE-KTEKIGGNTNKASSGMNASESSYQE 62

Query: 62  ---------------------------IDALDGLMGRVADAAGIQFRVL----------- 83
                                      +        +  D       VL           
Sbjct: 63  EAGIEDKREDFFEETLKGGHGTNQQDLLHYFVDHSAQAIDWLADLGIVLDNLTITGGMSK 122

Query: 84  ----NVKKGPA-----VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
                   G A     V+G +   D+    +             + Q +V     ++  +
Sbjct: 123 PRTHRPHDGSAVGGYLVKGLKANVDKRQIPV-------------ITQADVQEILVDQGQV 169

Query: 135 SSIVMQDN---SMIRCSTVVLTTGTF 157
             + ++ +     I+   V++ +G F
Sbjct: 170 KGVKVEIDDQVREIKSQAVIIASGGF 195


>gi|317472578|ref|ZP_07931897.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899987|gb|EFV21982.1| NADH:flavin oxidoreductase/NADH oxidase [Anaerostipes sp.
           3_2_56FAA]
          Length = 655

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+V+GGG AG EAA   A  G    L   K+  +G
Sbjct: 399 VLVVGGGPAGMEAAITLANRGHQVTLAE-KSEKLG 432


>gi|299135866|ref|ZP_07029050.1| dihydrolipoamide dehydrogenase [Acidobacterium sp. MP5ACTX8]
 gi|298601990|gb|EFI58144.1| dihydrolipoamide dehydrogenase [Acidobacterium sp. MP5ACTX8]
          Length = 482

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M + +YD+ +IGGG AG   A  A +LG   ALI  KT  +G
Sbjct: 1  MADTTYDLAIIGGGPAGYTCAIRAGQLGLKVALIE-KTDKLG 41


>gi|282312449|gb|ADA82242.1| lycopene beta cyclase [Crocus sativus]
          Length = 497

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I               I     G  V E +A+ 
Sbjct: 86  DLAVVGGGPAGLAVAQQVSEAGLSVVSIDPNP---------NVIWPNNYGVWVDEFEAMG 136

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L    A   G    V    K    R       + L    MQ+ + +   +   Q +V  
Sbjct: 137 LLDCLDASWLGAVVHVDEKNKKLLDRPYARVNRKNLKTKMMQKCLAN--GVKFHQAKVVK 194

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E    S ++  D   I  + V+  TG F R ++   K   P           L    
Sbjct: 195 VVHEDEK-SLLICNDGITIEATVVLDATG-FSRCLVQYDK---PYNPGYQVAYGILAEVE 249

Query: 187 MK-FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
               D D         + L G  ++  +  +       +PFS
Sbjct: 250 EHPLDLDKMVFMDWRDSHLKGNGVMQGRNNRIPTFLYAMPFS 291


>gi|269838083|ref|YP_003320311.1| monooxygenase FAD-binding protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269787346|gb|ACZ39489.1| monooxygenase FAD-binding protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 415

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I++G   AG   A + A+ G S  L+        S + +  +           I  L
Sbjct: 2   YDAIIVGARIAGSTTALLLAQRGYSILLL--DRDRFPSSTLSTHLFFTDSLSAFERIGVL 59

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL---------SQEN 116
           D ++    DA       L   + P V  P  + D   + L ++RE L         +   
Sbjct: 60  DRVL--AIDAPR-----LKRLRFPYVDAPFAEVDGRDFALCIRREPLDAILVEAAGAHPE 112

Query: 117 LDVIQGE-VAGFNTEKNIISSIV 138
           +++  G  V G   E   +  + 
Sbjct: 113 IELHTGARVTGLLREGERVIGVR 135


>gi|254374124|ref|ZP_04989606.1| hypothetical protein FTDG_00286 [Francisella novicida GA99-3548]
 gi|151571844|gb|EDN37498.1| hypothetical protein FTDG_00286 [Francisella novicida GA99-3548]
          Length = 495

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKADKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|154289566|ref|XP_001545396.1| hypothetical protein BC1G_16037 [Botryotinia fuckeliana B05.10]
 gi|150849024|gb|EDN24217.1| hypothetical protein BC1G_16037 [Botryotinia fuckeliana B05.10]
          Length = 235

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          +  + VI++GGG +G   A  A++ G    L    TS I  +    AIG      L +  
Sbjct: 8  SNDFRVIIVGGGISGLVTALAASRFGIRVDLYERNTS-IKELRAGVAIGPNAAALLEKLS 66

Query: 63 DALD 66
          D  D
Sbjct: 67 DGED 70


>gi|149375685|ref|ZP_01893454.1| thioredoxin-disulfide reductase [Marinobacter algicola DG893]
 gi|149360087|gb|EDM48542.1| thioredoxin-disulfide reductase [Marinobacter algicola DG893]
          Length = 530

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           ++V+VIGGG AG  AA  AA+ G ST +  
Sbjct: 213 FEVLVIGGGPAGSSAAIYAARKGISTGIAA 242


>gi|148241714|ref|YP_001226871.1| dihydrolipoamide dehydrogenase [Synechococcus sp. RCC307]
 gi|147850024|emb|CAK27518.1| Dihydrolipoamide dehydrogenase [Synechococcus sp. RCC307]
          Length = 479

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           YD+IVIG G+ G +AA  AA+ G  TA+I       G+     C P+   L     VRE
Sbjct: 6  DYDLIVIGAGYGGFDAAKHAAEKGLKTAIIE-SREMGGTCVNRGCVPSKALLAASGRVRE 64

Query: 62 ID 63
          + 
Sbjct: 65 LS 66


>gi|126738683|ref|ZP_01754388.1| hypothetical protein RSK20926_09462 [Roseobacter sp. SK209-2-6]
 gi|126720482|gb|EBA17188.1| hypothetical protein RSK20926_09462 [Roseobacter sp. SK209-2-6]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   +D +VIGGG AG  AA   A  G    ++  K     SM+    + G    +L ++
Sbjct: 1  MAEHWDAVVIGGGPAGLMAAGEIAAAGHRCLVLEAKP----SMARKLLMAGKSGLNLTKD 56


>gi|124022083|ref|YP_001016390.1| hypothetical protein P9303_03731 [Prochlorococcus marinus str.
          MIT 9303]
 gi|123962369|gb|ABM77125.1| Hypothetical protein P9303_03731 [Prochlorococcus marinus str.
          MIT 9303]
          Length = 938

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          SYDV+V+G G  G  AAA+ AK G    ++   
Sbjct: 12 SYDVLVVGAGIGGLTAAALLAKRGYRVLVVEQH 44


>gi|119491622|ref|ZP_01623494.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Lyngbya sp. PCC 8106]
 gi|119453351|gb|EAW34515.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Lyngbya sp. PCC 8106]
          Length = 593

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +DVI++GGG AG  AA   A++       +   + +       +     +G +   +  
Sbjct: 3  EHDVIIVGGGLAGSRAAVEMARMN-----PSLNIAMVAKTHPIRSHSVAAQGGIAASLKN 57

Query: 65 LDGL 68
          +D  
Sbjct: 58 VDSA 61


>gi|113866267|ref|YP_724756.1| thiamine biosynthesis oxidoreductase [Ralstonia eutropha H16]
 gi|113525043|emb|CAJ91388.1| thiamine biosynthesis oxidoreductase [Ralstonia eutropha H16]
          Length = 397

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S+DV ++G G AG  AA    + GA  AL+
Sbjct: 5  QSFDVAILGAGLAGRLAAWQLVRSGARVALV 35


>gi|118401082|ref|XP_001032862.1| Pyridine nucleotide-disulphide oxidoreductase family protein
           [Tetrahymena thermophila]
 gi|89287207|gb|EAR85199.1| Pyridine nucleotide-disulphide oxidoreductase family protein
           [Tetrahymena thermophila SB210]
          Length = 638

 Score = 42.2 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++++ YDV +IGGG AG   A  A KLG  T L 
Sbjct: 101 ILHQKYDVAIIGGGSAGLSFALEAHKLGMKTILF 134


>gi|331084913|ref|ZP_08334001.1| hypothetical protein HMPREF0987_00304 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330411007|gb|EGG90429.1| hypothetical protein HMPREF0987_00304 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 648

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           V+VIGGG AG EAA VA K G    L   K  ++G +    A+  + K  L + I  +
Sbjct: 383 VLVIGGGPAGMEAAFVAKKRGHEVVLCE-KGDSLGGLVKLAAV-PIAKQELTKVIQYM 438


>gi|331001415|ref|ZP_08325035.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329568297|gb|EGG50108.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 580

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 44/249 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPAI 50
           M +   D++VIG G AG  AA  A + G++  +I          +   ST  +   +  I
Sbjct: 133 MKDEKADIVVIGSGIAGLTAAIAAKEKGSNVLVIEKQGMLGAGDSMNISTGITAGGSKFI 192

Query: 51  GGLG-KGHLVREIDALDGLMGRVADA------------AGIQFRVLNVKKGPAVRGPRTQ 97
              G KG      D +D LM +  D             A     +++  +   V   R Q
Sbjct: 193 QEHGIKGKST--QDYVDHLMKQAKDKGIPINKANVETYARKGGEIIDWLEQLGVPFGRFQ 250

Query: 98  ADRELY------------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV--MQDNS 143
            D+  +              A++ E+  Q     +  +     ++      +     +  
Sbjct: 251 EDKYFHITKDGSAPGPHIMKALKAEVEKQGIPYRLNSKATEILSDHGKAIGVEVSTPEGK 310

Query: 144 -MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPA 202
             +    V++ TG F      + +              +  +S         +      A
Sbjct: 311 YKVLSKAVIVATGGFSASPELLKRYA----PDWIGRPTTGASSLTGDGIRMAQAIGADTA 366

Query: 203 RLDGKTIIW 211
            ++   + +
Sbjct: 367 SMEQIKVNY 375


>gi|311894419|dbj|BAJ26827.1| hypothetical protein KSE_09910 [Kitasatospora setae KM-6054]
          Length = 458

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVRE------ 61
           +VIGGG AGC AA      G +  ++  +       +   P +     GHL+ E      
Sbjct: 15  VVIGGGLAGCLAAWAL--HGVAERVVVVERDRYPDGVDFRPGVPQAKHGHLLLEAGQRTL 72

Query: 62  ------------------IDALDGLMGRVAD---AAGIQFRVLNVKKGPAVRGPRTQADR 100
                             +    GL    A    A          +   A         R
Sbjct: 73  DELLPGVLAELLAAGAARVPLAGGLRWLTAAGWLAPYESGGGGEGQAAGAGALAVLTCSR 132

Query: 101 ELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            L   A+ R + +  N++   G EV G   +++ ++ + +        +   L+ G
Sbjct: 133 PLIDHAVLRRVRAAPNIEFRTGTEVTGLLGDRHTVTGVRLSGRGGAGAAETELSAG 188


>gi|311032115|ref|ZP_07710205.1| reductase [Bacillus sp. m3-13]
          Length = 298

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA------------IGGL 53
          YD I++GGG AG +AA    +      ++           C               + GL
Sbjct: 3  YDCIIVGGGIAGLQAAIQLGRYQHKVLVLDEGKGRSSICHCYHNLLGWPDGVSGEKLRGL 62

Query: 54 GKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86
          G+ H +R      G    + +    QF V   K
Sbjct: 63 GREHALRLGVEFKGERVEMVEGLDGQFCVTTAK 95


>gi|307726507|ref|YP_003909720.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1003]
 gi|307726614|ref|YP_003909827.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1003]
 gi|307587032|gb|ADN60429.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1003]
 gi|307587139|gb|ADN60536.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia sp.
          CCGE1003]
          Length = 591

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S  +++
Sbjct: 11 RRFDVVIVGAGGSGMRASLQLARAGLSVCVLS 42


>gi|312199728|ref|YP_004019789.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Frankia sp. EuI1c]
 gi|311231064|gb|ADP83919.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Frankia sp. EuI1c]
          Length = 625

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 48/154 (31%), Gaps = 40/154 (25%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDVI+IGGG AG  +A  AA  G  T LI                          E  A 
Sbjct: 302 YDVIIIGGGPAGLGSAVYAASEGLRTVLI--------------------------ERTAT 335

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G  G+         R+ N    P         DR   +        S E +     E+ 
Sbjct: 336 GGQAGQS-------SRIENYLGFPDGVSGAQLTDRARRQAVK----FSAEVITAR--EIV 382

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               +     ++   D   +   TVVL TG   R
Sbjct: 383 ELRADGP-ARTVRFADGGELSAHTVVLATGVAYR 415


>gi|167749023|ref|ZP_02421150.1| hypothetical protein ANACAC_03804 [Anaerostipes caccae DSM 14662]
 gi|167651645|gb|EDR95774.1| hypothetical protein ANACAC_03804 [Anaerostipes caccae DSM 14662]
          Length = 655

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+V+GGG AG EAA   A  G    L   K+  +G
Sbjct: 399 VLVVGGGPAGMEAAITLANRGHQVTLAE-KSEKLG 432


>gi|150864677|ref|XP_001383611.2| phenol 2-monooxygenase [Scheffersomyces stipitis CBS 6054]
 gi|149385933|gb|ABN65582.2| phenol 2-monooxygenase [Scheffersomyces stipitis CBS 6054]
          Length = 724

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          + + DV+++G G +G  AA   A+ G    +             N    G   G   R +
Sbjct: 10 HSNTDVLIVGAGPSGLMAATWLARTGVPFRI----IDK----RSNDIFSGQADGLQCRSL 61

Query: 63 DALDGLMGRVADAAGI 78
          +      G   D AG+
Sbjct: 62 EVFKSFSGTTFDMAGM 77


>gi|327189747|gb|EGE56891.1| NADH:flavin oxidoreductase/NADH oxidase [Rhizobium etli CNPAF512]
          Length = 675

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+G G AG EAA VAA+ G    L
Sbjct: 389 VLVVGAGPAGLEAARVAAERGHRVIL 414


>gi|284038916|ref|YP_003388846.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Spirosoma linguale DSM 74]
 gi|283818209|gb|ADB40047.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Spirosoma linguale DSM 74]
          Length = 334

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 30/161 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH--KTSTIGSMSCNPAIGGLGKGHLVRE 61
           + YDVI++GGG  G  A   AAK G S  ++     T +I                   E
Sbjct: 2   QIYDVIIVGGGPCGLAAGIEAAKAGLSHLILEMGSLTESIRQYPRRMRFFSTA------E 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
              + GL   ++D    +   L   +  A            Y L          N ++ Q
Sbjct: 56  NIEIGGLPFAISDVKAGRDEALQYYRKAAAY----------YHL----------NFELFQ 95

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            EV     E  + + +  +  +  +   V++ TG F R   
Sbjct: 96  -EVWQVQKEGELFT-VTTKAGAAYQAHKVIMATGYFTRPRW 134


>gi|254421839|ref|ZP_05035557.1| geranylgeranyl reductase [Synechococcus sp. PCC 7335]
 gi|196189328|gb|EDX84292.1| geranylgeranyl reductase [Synechococcus sp. PCC 7335]
          Length = 407

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG  AA    K G  T L   K     +  C    GG     +V E D    
Sbjct: 5   VAVVGGGPAGSSAAETLVKAGIETFLFERKLD--NAKPC----GGAIPLCMVDEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++        G     D   Y    +REIL 
Sbjct: 55  LPPEIIDRRVRKMKMISPSNVEVNIGETLHND--EYIGMCRREILD 98


>gi|148377359|ref|YP_001256235.1| thioredoxin reductase [Mycoplasma agalactiae PG2]
 gi|148291405|emb|CAL58789.1| Thioredoxin reductase [Mycoplasma agalactiae PG2]
          Length = 307

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV++IG G  G  AA  A++ G  T ++
Sbjct: 7  YDVVIIGAGPGGLNAALYASRSGLRTLIV 35


>gi|145479843|ref|XP_001425944.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393016|emb|CAK58546.1| unnamed protein product [Paramecium tetraurelia]
          Length = 486

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + + +D+ VIGGG  G   A  AAKLGA  AL          +     +GG         
Sbjct: 3   VEQEFDLFVIGGGSGGLACAKQAAKLGAKVALA--DFVKPSPLGTKWGLGGTCVNV---- 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
                G + +           L   +  A     TQ D +      ++ + +  N
Sbjct: 57  -----GCIPKKLMHFASTLGELRHDQVEAGWID-TQVDSKH---NWEKMVENVNN 102


>gi|111018639|ref|YP_701611.1| L-aspartate oxidase [Rhodococcus jostii RHA1]
 gi|110818169|gb|ABG93453.1| probable L-aspartate oxidase [Rhodococcus jostii RHA1]
          Length = 531

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
          +++ S DV+VIGGG AG  AA  A + GA   L+             S  G    +P   
Sbjct: 4  LLDLSTDVLVIGGGPAGTWAALRARQSGADVVLVDKGYCGTSGATAPSGTGVWYVDPDPS 63

Query: 52 GLGKGHLVREIDALDG------LMGRVADAAGIQFRVL 83
             K    RE   L G       M RV D       +L
Sbjct: 64 ARAKAKASRE--TLGGHLADHHWMDRVLDQTYANMNLL 99


>gi|90416067|ref|ZP_01224000.1| succinate dehydrogenase [marine gamma proteobacterium HTCC2207]
 gi|90332441|gb|EAS47638.1| succinate dehydrogenase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++D +++GGG +G  AA   A+ G  TA+IT
Sbjct: 2  TFDAVIVGGGGSGMRAALQLAQSGYKTAVIT 32


>gi|77461444|ref|YP_350951.1| NADH:flavin oxidoreductase/NADH oxidase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385447|gb|ABA76960.1| putative oxidoreductase [Pseudomonas fluorescens Pf0-1]
          Length = 686

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+++G G AG EAA VAA+ G    L   K
Sbjct: 393 VVIVGAGPAGMEAARVAAERGHDVTLFEKK 422


>gi|329941828|ref|ZP_08291093.1| Beta-carotene ketolase [Streptomyces griseoaurantiacus M045]
 gi|329299545|gb|EGG43445.1| Beta-carotene ketolase [Streptomyces griseoaurantiacus M045]
          Length = 524

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD +++GGGH G  AAA  A+ G S  L+
Sbjct: 10 EHYDAVIVGGGHNGLVAAAYLARAGRSVLLL 40


>gi|332163387|ref|YP_004299964.1| hypothetical protein YE105_C3767 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325667617|gb|ADZ44261.1| hypothetical protein YE105_C3767 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330862194|emb|CBX72356.1| uncharacterized protein yhiN [Yersinia enterocolitica W22703]
          Length = 399

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|318607884|emb|CBY29382.1| NAD(FAD)-utilizing dehydrogenases [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 399

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|296221330|ref|XP_002756680.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 1 [Callithrix jacchus]
          Length = 1364

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|302381564|ref|YP_003817387.1| HI0933 family protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192192|gb|ADK99763.1| HI0933 family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 411

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          V VIG G AG  AA   A+ GA   +       + S+     + G G  +L    D
Sbjct: 9  VHVIGAGPAGLMAAETLARAGARVVVH----DRMPSVGRKFLMAGRGGLNLTHTED 60


>gi|262363671|gb|ACY60392.1| hypothetical protein YPD4_3488 [Yersinia pestis D106004]
          Length = 442

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 46 EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 95


>gi|238787694|ref|ZP_04631491.1| hypothetical protein yfred0001_24800 [Yersinia frederiksenii ATCC
          33641]
 gi|238724037|gb|EEQ15680.1| hypothetical protein yfred0001_24800 [Yersinia frederiksenii ATCC
          33641]
          Length = 400

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|238797047|ref|ZP_04640550.1| hypothetical protein ymoll0001_2110 [Yersinia mollaretii ATCC
          43969]
 gi|238719092|gb|EEQ10905.1| hypothetical protein ymoll0001_2110 [Yersinia mollaretii ATCC
          43969]
          Length = 400

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|238751195|ref|ZP_04612690.1| hypothetical protein yrohd0001_13790 [Yersinia rohdei ATCC 43380]
 gi|238710673|gb|EEQ02896.1| hypothetical protein yrohd0001_13790 [Yersinia rohdei ATCC 43380]
          Length = 409

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 11 EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 60


>gi|238757401|ref|ZP_04618587.1| hypothetical protein yaldo0001_33210 [Yersinia aldovae ATCC
          35236]
 gi|238704440|gb|EEP96971.1| hypothetical protein yaldo0001_33210 [Yersinia aldovae ATCC
          35236]
          Length = 400

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|238761257|ref|ZP_04622234.1| hypothetical protein ykris0001_36090 [Yersinia kristensenii ATCC
          33638]
 gi|238761510|ref|ZP_04622486.1| hypothetical protein ykris0001_22500 [Yersinia kristensenii ATCC
          33638]
 gi|238700484|gb|EEP93225.1| hypothetical protein ykris0001_22500 [Yersinia kristensenii ATCC
          33638]
 gi|238700737|gb|EEP93477.1| hypothetical protein ykris0001_36090 [Yersinia kristensenii ATCC
          33638]
          Length = 399

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|257063159|ref|YP_003142831.1| phytoene dehydrogenase-like oxidoreductase [Slackia
          heliotrinireducens DSM 20476]
 gi|256790812|gb|ACV21482.1| phytoene dehydrogenase-like oxidoreductase [Slackia
          heliotrinireducens DSM 20476]
          Length = 527

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++  YDVIV GGGH G   AA  AK G    ++  +    G +          K +L
Sbjct: 1  MSNKYDVIVAGGGHNGLITAAYLAKAGKKVLVVEGQEHAGGGLRTEEVAAPGFKSNL 57


>gi|269126282|ref|YP_003299652.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
          [Thermomonospora curvata DSM 43183]
 gi|268311240|gb|ACY97614.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
          [Thermomonospora curvata DSM 43183]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA 49
          R +D++VIG G  G  AA  AAKLG   A++  +   IG +  N  
Sbjct: 2  RDFDILVIGSGPGGQRAAIAAAKLGRRVAIVD-RRDMIGGVCINTG 46


>gi|227820424|ref|YP_002824395.1| oxidoreductase [Sinorhizobium fredii NGR234]
 gi|227339423|gb|ACP23642.1| putative oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 428

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D +VIGGG AG   A   A+ G S  ++  ++   G+   N      G      EI    
Sbjct: 30 DSVVIGGGLAGLTTALQLARSGQSVVVLEAESVGFGASGRNGGFVSPGYATGSGEIANRT 89

Query: 67 G 67
          G
Sbjct: 90 G 90


>gi|226699027|sp|P23116|EIF3A_MOUSE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Centrosomin; AltName:
           Full=Eukaryotic translation initiation factor 3 subunit
           10; AltName: Full=eIF-3-theta; AltName: Full=eIF3 p167;
           AltName: Full=eIF3 p180; AltName: Full=eIF3 p185;
           AltName: Full=p162
          Length = 1344

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|225020242|ref|ZP_03709434.1| hypothetical protein CORMATOL_00245 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946986|gb|EEG28195.1| hypothetical protein CORMATOL_00245 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 471

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 16/175 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +   +DV+V+G G  G  AA  AA+LG   A++  +        +G +     +      
Sbjct: 1   MTEHFDVVVLGAGPGGYVAAIRAAQLGKKVAVVEKQYWGGVCLNVGCIPSKALLKNAEVA 60

Query: 57  HLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           H+        G+ G  + D      R   V +G           R ++ L  + +I    
Sbjct: 61  HIFNHEAKTFGISGNASFDFGAAHQRSRKVSEG---------IVRGVHYLMKKNKITEIN 111

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKI 169
            L   +        E       +  DN +I   +VV +  G  + G I   + +I
Sbjct: 112 GLGAFKDAKTIEVREGKDTGKTITFDNCIIATGSVVRSLPGVTIGGNIVSFEEQI 166


>gi|218131748|ref|ZP_03460552.1| hypothetical protein BACEGG_03369 [Bacteroides eggerthii DSM 20697]
 gi|217986051|gb|EEC52390.1| hypothetical protein BACEGG_03369 [Bacteroides eggerthii DSM 20697]
          Length = 519

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +D++V+GGG AG  AA  +A+ G   A+I 
Sbjct: 213 RKFDLLVLGGGPAGTSAAIYSARKGLRVAIIA 244


>gi|186897317|ref|YP_001874429.1| hypothetical protein YPTS_4023 [Yersinia pseudotuberculosis PB1/+]
 gi|186700343|gb|ACC90972.1| HI0933 family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 462

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
             +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 64  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 113


>gi|166368366|ref|YP_001660639.1| succinate dehydrogenase flavoprotein subunit [Microcystis
          aeruginosa NIES-843]
 gi|166090739|dbj|BAG05447.1| succinate dehydrogenase flavoprotein subunit [Microcystis
          aeruginosa NIES-843]
          Length = 575

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLG 28
          + +DV+++GGG AGC AA    +L 
Sbjct: 2  KEHDVVIVGGGLAGCRAALEIKRLN 26


>gi|220920065|ref|YP_002495366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium nodulans ORS 2060]
 gi|219944671|gb|ACL55063.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium nodulans ORS 2060]
          Length = 299

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 45/150 (30%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-L 65
           DVI++GGG AG  AA V A+   +  LI                     GH    + A +
Sbjct: 3   DVIIVGGGPAGLSAALVLARCRRTVLLI-------------------DAGHPRNAVTARM 43

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           +G +G                 G      R  A         + E+    +++   GE  
Sbjct: 44  NGYLG---------------HDGCPPGELRATA---------RAELARYPSVECRDGEAT 79

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               E++  + +V+ D    R   ++L TG
Sbjct: 80  DARREEDGFT-VVLADGRTERARRLILATG 108


>gi|159026457|emb|CAO88969.1| frdA [Microcystis aeruginosa PCC 7806]
          Length = 575

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLG 28
          + +DV+++GGG AGC AA    +L 
Sbjct: 2  KEHDVVIVGGGLAGCRAALEIKRLN 26


>gi|154492608|ref|ZP_02032234.1| hypothetical protein PARMER_02242 [Parabacteroides merdae ATCC
           43184]
 gi|154087833|gb|EDN86878.1| hypothetical protein PARMER_02242 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLVRE 61
           DV ++GGG +G  AA   AK G   AL   K +       G+M  N  +       +VRE
Sbjct: 24  DVAIVGGGPSGIVAAYYLAKAGKKVALFDRKLAPGGGMWGGAMMFNDIVVQEEAMPIVRE 83

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +           DA    + + +V    A+    T+A   ++                  
Sbjct: 84  LGV------SYKDAGNGTYIMDSVHTTSALIYGATKAGATIFNCY--------------- 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA-GRMGDSPSN 180
             V       + ++ +V+    +IR        G  +  +  + K  +   G   +    
Sbjct: 123 -SVEDVVFHNDAVAGVVVNWAPVIR-------EGMHVDPLTIMSKAVLEGTGHDCEIARV 174

Query: 181 SLFNSFMKFDFDTGR 195
               + +K +  TG 
Sbjct: 175 VARKNDIKLNTPTGG 189


>gi|222479451|ref|YP_002565688.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Halorubrum lacusprofundi ATCC 49239]
 gi|222452353|gb|ACM56618.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Halorubrum lacusprofundi ATCC 49239]
          Length = 358

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  YD+ V+GGG AG   A   A+LG  T LI
Sbjct: 5  DDEYDIAVVGGGPAGLTTALYGARLGHETVLI 36


>gi|146219837|ref|NP_034253.3| eukaryotic translation initiation factor 3 subunit A [Mus musculus]
          Length = 1344

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|145600583|ref|YP_001164659.1| hypothetical protein YPDSF_3331 [Yersinia pestis Pestoides F]
 gi|145212279|gb|ABP41686.1| hypothetical protein YPDSF_3331 [Yersinia pestis Pestoides F]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
             +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 64  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 113


>gi|123444221|ref|YP_001008189.1| hypothetical protein YE4047 [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122091182|emb|CAL14065.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 399

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|134045306|ref|YP_001096792.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methanococcus maripaludis C5]
 gi|132662931|gb|ABO34577.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methanococcus maripaludis C5]
          Length = 384

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + V+GGG AG   A   A+ G    L    
Sbjct: 2  IAVVGGGPAGLSCAHALARYGLKVELYEMD 31


>gi|170022384|ref|YP_001718889.1| hypothetical protein YPK_0123 [Yersinia pseudotuberculosis YPIII]
 gi|169748918|gb|ACA66436.1| HI0933 family protein [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
             +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 64  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 113


>gi|50843746|ref|YP_056973.1| thioredoxin reductase [Propionibacterium acnes KPA171202]
 gi|289427429|ref|ZP_06429142.1| thioredoxin-disulfide reductase [Propionibacterium acnes J165]
 gi|295131836|ref|YP_003582499.1| thioredoxin-disulfide reductase [Propionibacterium acnes SK137]
 gi|50841348|gb|AAT84015.1| thioredoxin reductase [Propionibacterium acnes KPA171202]
 gi|289159359|gb|EFD07550.1| thioredoxin-disulfide reductase [Propionibacterium acnes J165]
 gi|291375991|gb|ADD99845.1| thioredoxin-disulfide reductase [Propionibacterium acnes SK137]
 gi|313765080|gb|EFS36444.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL013PA1]
 gi|313771119|gb|EFS37085.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL074PA1]
 gi|313792624|gb|EFS40710.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL110PA1]
 gi|313803159|gb|EFS44355.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL110PA2]
 gi|313806798|gb|EFS45296.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL087PA2]
 gi|313811715|gb|EFS49429.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL083PA1]
 gi|313814273|gb|EFS51987.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL025PA1]
 gi|313815671|gb|EFS53385.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL059PA1]
 gi|313817588|gb|EFS55302.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL046PA2]
 gi|313821586|gb|EFS59300.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL036PA1]
 gi|313824470|gb|EFS62184.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL036PA2]
 gi|313826816|gb|EFS64530.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL063PA1]
 gi|313829133|gb|EFS66847.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL063PA2]
 gi|313832482|gb|EFS70196.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL007PA1]
 gi|313832708|gb|EFS70422.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL056PA1]
 gi|313839568|gb|EFS77282.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL086PA1]
 gi|314916161|gb|EFS79992.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL005PA4]
 gi|314917423|gb|EFS81254.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL050PA1]
 gi|314921763|gb|EFS85594.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL050PA3]
 gi|314926200|gb|EFS90031.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL036PA3]
 gi|314930969|gb|EFS94800.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL067PA1]
 gi|314955360|gb|EFS99765.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL027PA1]
 gi|314959442|gb|EFT03544.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL002PA1]
 gi|314961606|gb|EFT05707.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL002PA2]
 gi|314963929|gb|EFT08029.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL082PA1]
 gi|314969136|gb|EFT13234.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL037PA1]
 gi|314975146|gb|EFT19241.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL053PA1]
 gi|314977556|gb|EFT21651.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL045PA1]
 gi|314979977|gb|EFT24071.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL072PA2]
 gi|314985097|gb|EFT29189.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL005PA1]
 gi|314987168|gb|EFT31260.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL005PA2]
 gi|314990631|gb|EFT34722.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL005PA3]
 gi|315079105|gb|EFT51112.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL053PA2]
 gi|315081551|gb|EFT53527.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL078PA1]
 gi|315083024|gb|EFT55000.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL027PA2]
 gi|315086557|gb|EFT58533.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL002PA3]
 gi|315087961|gb|EFT59937.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL072PA1]
 gi|315096958|gb|EFT68934.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL038PA1]
 gi|315099395|gb|EFT71371.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL059PA2]
 gi|315102393|gb|EFT74369.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL046PA1]
 gi|315107375|gb|EFT79351.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL030PA1]
 gi|315109739|gb|EFT81715.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL030PA2]
 gi|327332448|gb|EGE74183.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL096PA2]
 gi|327334070|gb|EGE75785.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL096PA3]
 gi|327444525|gb|EGE91179.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL013PA2]
 gi|327446776|gb|EGE93430.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL043PA2]
 gi|327448782|gb|EGE95436.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL043PA1]
 gi|327456259|gb|EGF02914.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL083PA2]
 gi|327457467|gb|EGF04122.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL092PA1]
 gi|328758030|gb|EGF71646.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL020PA1]
 gi|328758990|gb|EGF72606.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL025PA2]
 gi|328759844|gb|EGF73434.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL099PA1]
 gi|332676701|gb|AEE73517.1| thioredoxin reductase [Propionibacterium acnes 266]
          Length = 350

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 41/171 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVI++G G AG  AA   A+ G    +        G++     +          E 
Sbjct: 41  DEPRDVIIVGSGPAGYTAAVYTARAGLKPLVFEGSMDAGGALMQTTEVENY---PGFSEG 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                LM ++                      R QA+R                 ++I  
Sbjct: 98  IMGPDLMAQM----------------------RAQAERF--------------GAELIAD 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +V   +     I  +V  D +  +   V+L  G+  R  + +      +GR
Sbjct: 122 DVTDIDLTG-EIKKLVDTDGNTYKAHVVILAMGSAYR-KLGLEDEPRLSGR 170


>gi|54027239|ref|YP_121481.1| dihydrolipoamide dehydrogenase [Nocardia farcinica IFM 10152]
 gi|54018747|dbj|BAD60117.1| putative dihydrolipoamide dehydrogenase [Nocardia farcinica IFM
          10152]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  +A+LG  TA++  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRSAQLGLRTAVVEQKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+  +     G+ G V+   G  F
Sbjct: 61 HIFHKEAKTFGISGDVSFDFGAAF 84


>gi|51598099|ref|YP_072290.1| hypothetical protein YPTB3809 [Yersinia pseudotuberculosis IP
          32953]
 gi|153949504|ref|YP_001402978.1| hypothetical protein YpsIP31758_4032 [Yersinia pseudotuberculosis
          IP 31758]
 gi|51591381|emb|CAH23047.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
          32953]
 gi|152960999|gb|ABS48460.1| conserved hypothetical protein TIGR00275 [Yersinia
          pseudotuberculosis IP 31758]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|150261077|ref|ZP_01917805.1| hypothetical protein YPE_3428 [Yersinia pestis CA88-4125]
 gi|167468066|ref|ZP_02332770.1| hypothetical protein YpesF_09244 [Yersinia pestis FV-1]
 gi|218930962|ref|YP_002348837.1| hypothetical protein YPO3966 [Yersinia pestis CO92]
 gi|229836455|ref|ZP_04456622.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis Pestoides A]
 gi|229839665|ref|ZP_04459824.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229841748|ref|ZP_04461904.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229904286|ref|ZP_04519397.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis Nepal516]
 gi|115349573|emb|CAL22547.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149290485|gb|EDM40562.1| hypothetical protein YPE_3428 [Yersinia pestis CA88-4125]
 gi|229678404|gb|EEO74509.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis Nepal516]
 gi|229691087|gb|EEO83140.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis biovar Orientalis str. India 195]
 gi|229696031|gb|EEO86078.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis biovar Orientalis str. PEXU2]
 gi|229706523|gb|EEO92530.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis Pestoides A]
 gi|320017293|gb|ADW00865.1| putative oxidoreductase with FAD/NAD(P)-binding domain [Yersinia
          pestis biovar Medievalis str. Harbin 35]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|238793285|ref|ZP_04636912.1| hypothetical protein yinte0001_37180 [Yersinia intermedia ATCC
          29909]
 gi|238727453|gb|EEQ18980.1| hypothetical protein yinte0001_37180 [Yersinia intermedia ATCC
          29909]
          Length = 400

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|238783938|ref|ZP_04627955.1| hypothetical protein yberc0001_3340 [Yersinia bercovieri ATCC
          43970]
 gi|238715177|gb|EEQ07172.1| hypothetical protein yberc0001_3340 [Yersinia bercovieri ATCC
          43970]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 51


>gi|162419407|ref|YP_001608378.1| hypothetical protein YpAngola_A4094 [Yersinia pestis Angola]
 gi|162352222|gb|ABX86170.1| conserved hypothetical protein TIGR00275 [Yersinia pestis Angola]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
             +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 64  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 113


>gi|22127734|ref|NP_671157.1| hypothetical protein y3863 [Yersinia pestis KIM 10]
 gi|45443078|ref|NP_994617.1| hypothetical protein YP_3329 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809785|ref|YP_653701.1| hypothetical protein YPA_3794 [Yersinia pestis Antiqua]
 gi|108813775|ref|YP_649542.1| hypothetical protein YPN_3615 [Yersinia pestis Nepal516]
 gi|165926994|ref|ZP_02222826.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936948|ref|ZP_02225514.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009684|ref|ZP_02230582.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213477|ref|ZP_02239512.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400494|ref|ZP_02306003.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420903|ref|ZP_02312656.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426524|ref|ZP_02318277.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|270488107|ref|ZP_06205181.1| flavoprotein, HI0933 family [Yersinia pestis KIM D27]
 gi|294504308|ref|YP_003568370.1| hypothetical protein YPZ3_2198 [Yersinia pestis Z176003]
 gi|21960857|gb|AAM87408.1|AE013990_6 hypothetical protein y3863 [Yersinia pestis KIM 10]
 gi|45437945|gb|AAS63494.1| Predicted flavoproteins [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777423|gb|ABG19942.1| hypothetical protein YPN_3615 [Yersinia pestis Nepal516]
 gi|108781698|gb|ABG15756.1| hypothetical protein YPA_3794 [Yersinia pestis Antiqua]
 gi|165915190|gb|EDR33801.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921100|gb|EDR38324.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991606|gb|EDR43907.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205418|gb|EDR49898.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961032|gb|EDR57053.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049862|gb|EDR61270.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054512|gb|EDR64320.1| conserved hypothetical protein TIGR00275 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|262367602|gb|ACY64159.1| hypothetical protein YPD8_3491 [Yersinia pestis D182038]
 gi|270336611|gb|EFA47388.1| flavoprotein, HI0933 family [Yersinia pestis KIM D27]
 gi|294354767|gb|ADE65108.1| hypothetical protein YPZ3_2198 [Yersinia pestis Z176003]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
             +DV+VIG G AG   AA A + G    L+               + G G+ +
Sbjct: 64  EQFDVVVIGAGAAGLFCAAQAGQAGCRVLLV----DNGKKAGRKILMSGGGRCN 113


>gi|332212109|ref|XP_003255164.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           [Nomascus leucogenys]
          Length = 1364

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|325689709|gb|EGD31713.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           sanguinis SK115]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|323442134|gb|EGA99768.1| mercury(II) reductase [Staphylococcus aureus O46]
          Length = 440

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 106/304 (34%), Gaps = 52/304 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  +G +    LV    
Sbjct: 2   KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--VGCIASKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  + +  +   V+N    K   +    +  D   ++   +       NL   
Sbjct: 57  --DGLEGKTFEESYNRKNDVVNALNNKNYHLLADDSNIDVLDFKAQFKSNTEV--NLLNQ 112

Query: 121 QGEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            G++A   T  +II     +S++     + +   V  +TG           + +  G + 
Sbjct: 113 HGDIADSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI- 171

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +    + F         L+ G     R D   + +  T+                 +
Sbjct: 172 ---ALEFASMFANLGSKVTVLERGESFMPREDQDVVAYAITD-----------------L 211

Query: 234 TNRQIECGITRTNLETHRIIMENIKHSAI-------YSGDIKSYG--PRYCPSIEDKIVR 284
            N+ I      TN+ET  +  ++   +             + + G  P    ++E+  ++
Sbjct: 212 ENKGIAL---YTNVETTELSSDDHHTTVHTNVGNFEADAVLLAIGRKPNTDLALENTDIQ 268

Query: 285 FGER 288
            G+R
Sbjct: 269 LGDR 272


>gi|317474636|ref|ZP_07933910.1| alkyl hydroperoxide reductase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909317|gb|EFV30997.1| alkyl hydroperoxide reductase [Bacteroides eggerthii 1_2_48FAA]
          Length = 519

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +D++V+GGG AG  AA  +A+ G   A+I 
Sbjct: 213 RKFDLLVLGGGPAGTSAAIYSARKGLRVAIIA 244


>gi|315222971|ref|ZP_07864850.1| dihydrolipoyl dehydrogenase [Streptococcus anginosus F0211]
 gi|315187921|gb|EFU21657.1| dihydrolipoyl dehydrogenase [Streptococcus anginosus F0211]
          Length = 567

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 109 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 140


>gi|296221332|ref|XP_002756681.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 2 [Callithrix jacchus]
          Length = 1354

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|225848431|ref|YP_002728594.1| L-aspartate oxidase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644226|gb|ACN99276.1| L-aspartate oxidase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 84/248 (33%), Gaps = 46/248 (18%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-----------GSMSCNPAIG 51
           N   D +++G G AG   A    KLG    +IT K   I            ++ C  ++ 
Sbjct: 17  NEVVDTVIVGSGLAGISTAYYLLKLGIKPLIITKKKPGISNSFLAQGGIAAAIGCLDSV- 75

Query: 52  GLGKGHLVREIDALDGLMG-------------RVADA--AGIQFRV-----LNVKKGPAV 91
                H    I+A  GL               RV D   AG++F         + K  A 
Sbjct: 76  ---DLHFQDTINAGKGLCIEKNVRILVEEGLERVIDLIVAGVEFDKDENGFPKLTKEGAH 132

Query: 92  RGPRTQADRELYRLAMQREILSQ--ENLDVIQG-EVAGFNTEKNIISSIVMQDN---SMI 145
              R    ++     + +++L     N+ +  G  +    T+++    I++ D     ++
Sbjct: 133 SINRVLHSKDKTGHEIGKKLLEYVKNNVFLADGFYLEEILTDEDKYVGILLSDGKNQKVV 192

Query: 146 RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF----DTGRLKTGTP 201
           R  ++VL TG +    +        +G        S     M  +F     T     G P
Sbjct: 193 RSKSLVLATGGYSGVFLRNTSAYNVSGDSIAVAYRSGCE-LMDLEFVQFHPTAIYIEGKP 251

Query: 202 ARLDGKTI 209
             L  + +
Sbjct: 252 GWLISEAV 259


>gi|297195559|ref|ZP_06912957.1| amino oxidase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721382|gb|EDY65290.1| amino oxidase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 565

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +V VIGGG +G  AA    K+G    +       IG         G G   L  E+ A+
Sbjct: 51  EVAVIGGGLSGIVAAYELMKMGLRPVVYE--ADRIGGRLRTVGFEGTGTDELTAEMGAM 107


>gi|194042126|ref|XP_001928377.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           [Sus scrofa]
          Length = 1376

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|261337190|ref|NP_001040552.2| eukaryotic translation initiation factor 3 subunit A [Rattus
           norvegicus]
 gi|229488252|sp|Q1JU68|EIF3A_RAT RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta
          Length = 1354

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|126180327|ref|YP_001048292.1| hypothetical protein Memar_2387 [Methanoculleus marisnigri JR1]
 gi|125863121|gb|ABN58310.1| HI0933 family protein [Methanoculleus marisnigri JR1]
          Length = 410

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
          + +IGGG AG   A  A + G +  L                I G G+ ++  + D  D 
Sbjct: 5  IAIIGGGPAGLFCALQAIEAGKNVVLF----EKKPVAGRKLLIAGSGQCNITHDGDIADF 60

Query: 67 ----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
              G  G     A + F   ++    A RG R + +
Sbjct: 61 LSHYGDHGAFLRPALMNFTNRDLIAFFADRGLRMETE 97


>gi|68537030|ref|YP_251735.1| dihydrolipoamide dehydrogenase [Corynebacterium jeikeium K411]
 gi|68264629|emb|CAI38117.1| dihydrolipoamide dehydrogenase [Corynebacterium jeikeium K411]
          Length = 476

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV+V+G G  G  AA  AA+LG  TA+I
Sbjct: 1  MAKEHFDVVVLGAGPGGYVAAIRAAQLGLKTAVI 34


>gi|1205976|gb|AAA90910.1| p162 protein [Mus musculus]
          Length = 1344

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|325122127|gb|ADY81650.1| dihydrolipoamide dehydrogenase (E3 component of pyruvate and
          2-oxoglutarate dehydrogenase complexes) [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|311694410|gb|ADP97283.1| succinate dehydrogenase flavoprotein subunit-like protein [marine
          bacterium HP15]
          Length = 590

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          S+D IVIGGG +G  AA    + G +TA IT
Sbjct: 8  SFDAIVIGGGGSGMRAALQLTESGVNTACIT 38


>gi|332853856|ref|ZP_08435015.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013150]
 gi|332865966|ref|ZP_08436734.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013113]
 gi|332728337|gb|EGJ59716.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013150]
 gi|332734896|gb|EGJ65983.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6013113]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|293608144|ref|ZP_06690447.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828717|gb|EFF87079.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|295689354|ref|YP_003593047.1| hypothetical protein Cseg_1956 [Caulobacter segnis ATCC 21756]
 gi|295431257|gb|ADG10429.1| HI0933 family protein [Caulobacter segnis ATCC 21756]
          Length = 393

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 14/171 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            ++DV+VIG G AG   A  A K G S            +      I G G+ +      
Sbjct: 2   ENFDVLVIGAGAAGMMCAIEAGKRGRSVLA----IDHAKAPGEKIRISGGGRCNFTNTGA 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           ++   +      A    R    K   A+         E Y +A   + L Q   D    +
Sbjct: 58  SIHNFLSANPKFALSALRRYRPKDFIALV--------ERYGVAYHEKTLGQLFCDGSAKQ 109

Query: 124 VAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +      +   + + ++  + ++           T   G +    L + +G
Sbjct: 110 IIDMLLTEMRAAGVTLRLETAVQGVTKADDGFKVTLSSGEVRCASLVVASG 160


>gi|239501823|ref|ZP_04661133.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter baumannii
          AB900]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|222080209|ref|YP_002540072.1| oxidoreductase [Agrobacterium vitis S4]
 gi|221738854|gb|ACM39633.1| oxidoreductase [Agrobacterium vitis S4]
          Length = 460

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG  AA   AK G S A+I
Sbjct: 37 DVVVIGGGIAGISAAYYLAKKGHSVAVI 64


>gi|184158058|ref|YP_001846397.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter baumannii
          ACICU]
 gi|332874518|ref|ZP_08442421.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6014059]
 gi|183209652|gb|ACC57050.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter baumannii
          ACICU]
 gi|322508377|gb|ADX03831.1| Dihydrolipoamide dehydrogenase [Acinetobacter baumannii 1656-2]
 gi|323517999|gb|ADX92380.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332737362|gb|EGJ68286.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii 6014059]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|169796022|ref|YP_001713815.1| dihydrolipoamide dehydrogenase (E3 component of pyruvate and
          2-oxoglutarate dehydrogenases complexes) [Acinetobacter
          baumannii AYE]
 gi|213157244|ref|YP_002319289.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB0057]
 gi|215483479|ref|YP_002325696.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB307-0294]
 gi|301344732|ref|ZP_07225473.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB056]
 gi|301512991|ref|ZP_07238228.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB058]
 gi|301595875|ref|ZP_07240883.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB059]
 gi|169148949|emb|CAM86824.1| dihydrolipoamide dehydrogenase (E3 component of pyruvate and
          2-oxoglutarate dehydrogenases complexes) [Acinetobacter
          baumannii AYE]
 gi|213056404|gb|ACJ41306.1| dihydrolipoamide dehydrogenase [Acinetobacter baumannii AB0057]
 gi|213988149|gb|ACJ58448.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii AB307-0294]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|149040541|gb|EDL94579.1| eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Rattus norvegicus]
          Length = 1354

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|42522357|ref|NP_967737.1| dihydrolipoamide dehydrogenase, E3 subunit [Bdellovibrio
          bacteriovorus HD100]
 gi|39574889|emb|CAE78730.1| dihydrolipoamide dehydrogenase, E3 subunit [Bdellovibrio
          bacteriovorus HD100]
          Length = 473

 Score = 42.2 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++DV+VIG G  G  AA  +A+LG  TA+I
Sbjct: 2  QNFDVVVIGAGPGGYVAAIRSAQLGFKTAVI 32


>gi|332286894|ref|YP_004418805.1| monooxygenase, FAD-binding protein [Pusillimonas sp. T7-7]
 gi|330430847|gb|AEC22181.1| monooxygenase, FAD-binding protein [Pusillimonas sp. T7-7]
          Length = 391

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N ++DV+++G G AG   A   AK G    L+
Sbjct: 10 NTTWDVVIVGAGPAGTATAITLAKFGQRVLLL 41


>gi|325833703|ref|ZP_08166118.1| putative fumarate reductase flavoprotein subunit [Eggerthella sp.
           HGA1]
 gi|325485243|gb|EGC87713.1| putative fumarate reductase flavoprotein subunit [Eggerthella sp.
           HGA1]
          Length = 562

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           D++V+G G AG  A+  AA+ GA    I   T   G   C  A+G   K     EID
Sbjct: 91  DIVVVGAGIAGLMASLKAAEEGAKVICIEKMTKGRGCFECFGAVG--AKCQEGTEID 145


>gi|323488198|ref|ZP_08093449.1| regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323398202|gb|EGA90997.1| regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 451

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
          + + +D+IVIG G AG  AA    K G   A+I  +    T     C+P    +G  +++
Sbjct: 1  MQKKFDLIVIGTGSAGTAAAMKCKKAGWEVAIIDSRPFGGTCALRGCDPKKILVGAANII 60

Query: 60 REIDALDG 67
            +D + G
Sbjct: 61 DSVDRMKG 68


>gi|306842932|ref|ZP_07475566.1| dihydrolipoamide dehydrogenase [Brucella sp. BO2]
 gi|306286860|gb|EFM58385.1| dihydrolipoamide dehydrogenase [Brucella sp. BO2]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|294851160|ref|ZP_06791833.1| dihydrolipoyl dehydrogenase [Brucella sp. NVSL 07-0026]
 gi|294819749|gb|EFG36748.1| dihydrolipoyl dehydrogenase [Brucella sp. NVSL 07-0026]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|281356555|ref|ZP_06243047.1| FAD dependent oxidoreductase [Victivallis vadensis ATCC BAA-548]
 gi|281317247|gb|EFB01269.1| FAD dependent oxidoreductase [Victivallis vadensis ATCC BAA-548]
          Length = 581

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 34/163 (20%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D  V+GGG AG   A   A+ G    L          M   P  GG   G          
Sbjct: 13  DFCVVGGGIAGMTMALECARAGFRVVL----------MHDRPVPGGNASGECR------- 55

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDV 119
            +    AD  G   ++ N+++   +   R +  R        ++ + +   + ++ NL V
Sbjct: 56  -VQISGADRLG---KLPNLRETGILEELRLENCRINPNGSYSVWDMVLWSALETEPNLQV 111

Query: 120 IQG-EVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGT 156
           +            N I ++       Q    +        +G 
Sbjct: 112 LYNCSCRAAVMAGNRIKTVTGWQTTTQKEITVAAKLFADCSGD 154


>gi|256059895|ref|ZP_05450081.1| dihydrolipoamide dehydrogenase [Brucella neotomae 5K33]
 gi|261323865|ref|ZP_05963062.1| dihydrolipoamide dehydrogenase [Brucella neotomae 5K33]
 gi|261299845|gb|EEY03342.1| dihydrolipoamide dehydrogenase [Brucella neotomae 5K33]
          Length = 464

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|256045525|ref|ZP_05448408.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265991949|ref|ZP_06104506.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263003015|gb|EEZ15308.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|254717980|ref|ZP_05179791.1| dihydrolipoamide dehydrogenase [Brucella sp. 83/13]
 gi|265982923|ref|ZP_06095658.1| dihydrolipoamide dehydrogenase [Brucella sp. 83/13]
 gi|306839757|ref|ZP_07472558.1| dihydrolipoamide dehydrogenase [Brucella sp. NF 2653]
 gi|306843370|ref|ZP_07475971.1| dihydrolipoamide dehydrogenase [Brucella sp. BO1]
 gi|264661515|gb|EEZ31776.1| dihydrolipoamide dehydrogenase [Brucella sp. 83/13]
 gi|306276061|gb|EFM57761.1| dihydrolipoamide dehydrogenase [Brucella sp. BO1]
 gi|306405112|gb|EFM61390.1| dihydrolipoamide dehydrogenase [Brucella sp. NF 2653]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|254694550|ref|ZP_05156378.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 3 str. Tulya]
 gi|261214870|ref|ZP_05929151.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 3 str. Tulya]
 gi|260916477|gb|EEX83338.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 3 str. Tulya]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|257790394|ref|YP_003181000.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257474291|gb|ACV54611.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
          Length = 562

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           D++V+G G AG  A+  AA+ GA    I   T   G   C  A+G   K     EID
Sbjct: 91  DIVVVGAGIAGLMASLKAAEEGAKVICIEKMTKGRGCFECFGAVG--AKCQEGTEID 145


>gi|225853356|ref|YP_002733589.1| dihydrolipoamide dehydrogenase [Brucella melitensis ATCC 23457]
 gi|256263159|ref|ZP_05465691.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 2 str.
           63/9]
 gi|225641721|gb|ACO01635.1| dihydrolipoamide dehydrogenase [Brucella melitensis ATCC 23457]
 gi|263093064|gb|EEZ17214.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409920|gb|ADZ66985.1| dihydrolipoamide dehydrogenase [Brucella melitensis M28]
 gi|326539634|gb|ADZ87849.1| dihydrolipoamide dehydrogenase [Brucella melitensis M5-90]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|163843941|ref|YP_001628345.1| dihydrolipoamide dehydrogenase [Brucella suis ATCC 23445]
 gi|163674664|gb|ABY38775.1| dihydrolipoamide dehydrogenase [Brucella suis ATCC 23445]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|161619836|ref|YP_001593723.1| dihydrolipoamide dehydrogenase [Brucella canis ATCC 23365]
 gi|260567593|ref|ZP_05838063.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|161336647|gb|ABX62952.1| dihydrolipoamide dehydrogenase [Brucella canis ATCC 23365]
 gi|260157111|gb|EEW92191.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 4 str. 40]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|134301690|ref|YP_001121658.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049467|gb|ABO46538.1| L-aspartate oxidase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 495

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 41/229 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAMQREILSQENLDVIQGE-------VAGFNTEKNIISSIVMQDN---- 142
           A     ++    A+   +   +NLD  +         V     +      +   DN    
Sbjct: 121 ARILHIKDYTGRAVITSL--YKNLDSFKNISTYPEHNVIELIKKDYKCVGLYSHDNKYQV 178

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
           +      V+L  G    G+                 +  +       +F
Sbjct: 179 TKFITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|7248876|gb|AAF43703.1|AF235020_4 dihydrolipoamide dehydrogenase [Brucella melitensis]
          Length = 293

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|260906645|ref|ZP_05914967.1| NADH:flavin oxidoreductase/NADH oxidase [Brevibacterium linens BL2]
          Length = 695

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIG G AG EAA VAA  G    L+
Sbjct: 388 VVVIGAGPAGLEAARVAAVRGHRVTLL 414


>gi|78043298|ref|YP_360068.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995413|gb|ABB14312.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 893

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           ++DV+VIGGG AG + A    + G    ++  K  + G    N  I   G
Sbjct: 486 NFDVVVIGGGLAGLKVAEALTEKGVLVTVVE-KQDSFGGKHKNKVIPLEG 534


>gi|23502768|ref|NP_698895.1| dihydrolipoamide dehydrogenase [Brucella suis 1330]
 gi|225628118|ref|ZP_03786153.1| dihydrolipoamide dehydrogenase [Brucella ceti str. Cudo]
 gi|254700562|ref|ZP_05162390.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 5 str. 513]
 gi|254707554|ref|ZP_05169382.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|254708909|ref|ZP_05170720.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis B2/94]
 gi|254713664|ref|ZP_05175475.1| dihydrolipoamide dehydrogenase [Brucella ceti M644/93/1]
 gi|254715982|ref|ZP_05177793.1| dihydrolipoamide dehydrogenase [Brucella ceti M13/05/1]
 gi|256030435|ref|ZP_05444049.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M292/94/1]
 gi|256158419|ref|ZP_05456317.1| dihydrolipoamide dehydrogenase [Brucella ceti M490/95/1]
 gi|256253839|ref|ZP_05459375.1| dihydrolipoamide dehydrogenase [Brucella ceti B1/94]
 gi|256370320|ref|YP_003107831.1| dihydrolipoamide dehydrogenase [Brucella microti CCM 4915]
 gi|260169345|ref|ZP_05756156.1| dihydrolipoamide dehydrogenase [Brucella sp. F5/99]
 gi|261217747|ref|ZP_05932028.1| dihydrolipoamide dehydrogenase [Brucella ceti M13/05/1]
 gi|261220974|ref|ZP_05935255.1| dihydrolipoamide dehydrogenase [Brucella ceti B1/94]
 gi|261315038|ref|ZP_05954235.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|261316405|ref|ZP_05955602.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis B2/94]
 gi|261321405|ref|ZP_05960602.1| dihydrolipoamide dehydrogenase [Brucella ceti M644/93/1]
 gi|261751066|ref|ZP_05994775.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 5 str. 513]
 gi|261758861|ref|ZP_06002570.1| dihydrolipoamide dehydrogenase [Brucella sp. F5/99]
 gi|265987477|ref|ZP_06100034.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M292/94/1]
 gi|265996933|ref|ZP_06109490.1| dihydrolipoamide dehydrogenase [Brucella ceti M490/95/1]
 gi|23348787|gb|AAN30810.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase
           [Brucella suis 1330]
 gi|225616943|gb|EEH13990.1| dihydrolipoamide dehydrogenase [Brucella ceti str. Cudo]
 gi|256000483|gb|ACU48882.1| dihydrolipoamide dehydrogenase [Brucella microti CCM 4915]
 gi|260919558|gb|EEX86211.1| dihydrolipoamide dehydrogenase [Brucella ceti B1/94]
 gi|260922836|gb|EEX89404.1| dihydrolipoamide dehydrogenase [Brucella ceti M13/05/1]
 gi|261294095|gb|EEX97591.1| dihydrolipoamide dehydrogenase [Brucella ceti M644/93/1]
 gi|261295628|gb|EEX99124.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis B2/94]
 gi|261304064|gb|EEY07561.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|261738845|gb|EEY26841.1| dihydrolipoamide dehydrogenase [Brucella sp. F5/99]
 gi|261740819|gb|EEY28745.1| dihydrolipoamide dehydrogenase [Brucella suis bv. 5 str. 513]
 gi|262551401|gb|EEZ07391.1| dihydrolipoamide dehydrogenase [Brucella ceti M490/95/1]
 gi|264659674|gb|EEZ29935.1| dihydrolipoamide dehydrogenase [Brucella pinnipedialis M292/94/1]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|17986429|ref|NP_539063.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260562835|ref|ZP_05833321.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|17982024|gb|AAL51327.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260152851|gb|EEW87943.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 1 str. 16M]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|62290772|ref|YP_222565.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 1 str. 9-941]
 gi|82700684|ref|YP_415258.1| dihydrolipoamide dehydrogenase [Brucella melitensis biovar Abortus
           2308]
 gi|189024987|ref|YP_001935755.1| dihydrolipoamide dehydrogenase [Brucella abortus S19]
 gi|237816280|ref|ZP_04595273.1| dihydrolipoamide dehydrogenase [Brucella abortus str. 2308 A]
 gi|254690062|ref|ZP_05153316.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 6 str. 870]
 gi|254696175|ref|ZP_05158003.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731093|ref|ZP_05189671.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|260546039|ref|ZP_05821779.1| dihydrolipoamide dehydrogenase [Brucella abortus NCTC 8038]
 gi|260755597|ref|ZP_05867945.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 6 str. 870]
 gi|260758823|ref|ZP_05871171.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|260760547|ref|ZP_05872890.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62196904|gb|AAX75204.1| LpdA-2, 2-oxoglutarate dehydrogenase, E3 component, lipoamide
           dehydrogenase [Brucella abortus bv. 1 str. 9-941]
 gi|82616785|emb|CAJ11874.1| Pyridine nucleotide-disulphide oxidoreductase, class-II:NAD binding
           site:Adrenodoxin reductase:Mercuric reductase:Pyridine
           nu [Brucella melitensis biovar Abortus 2308]
 gi|189020559|gb|ACD73281.1| dihydrolipoamide dehydrogenase [Brucella abortus S19]
 gi|237788347|gb|EEP62562.1| dihydrolipoamide dehydrogenase [Brucella abortus str. 2308 A]
 gi|260096146|gb|EEW80022.1| dihydrolipoamide dehydrogenase [Brucella abortus NCTC 8038]
 gi|260669141|gb|EEX56081.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|260670979|gb|EEX57800.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675705|gb|EEX62526.1| dihydrolipoamide dehydrogenase [Brucella abortus bv. 6 str. 870]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   AG  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|332361206|gb|EGJ39010.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK1056]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|324992905|gb|EGC24825.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           sanguinis SK405]
 gi|327474231|gb|EGF19638.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK408]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|313891767|ref|ZP_07825372.1| putative thioredoxin-disulfide reductase [Dialister
          microaerophilus UPII 345-E]
 gi|313119761|gb|EFR42948.1| putative thioredoxin-disulfide reductase [Dialister
          microaerophilus UPII 345-E]
          Length = 304

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + +DV+VIGGG AG  AA  A +   S A+IT   
Sbjct: 2  KIFDVVVIGGGPAGLNAAMYAVRKELSVAIITTDI 36


>gi|239832271|ref|ZP_04680600.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239824538|gb|EEQ96106.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 392

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 14/168 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIG G AG   A  AA+ G S  ++        +      I G G+ +      +  
Sbjct: 5   DIVVIGAGAAGMMCAIEAARRGRSVLVV----DHAKTAGEKIRISGGGRCNFTNLHASPK 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             + +    +         +   A+         E YR+A   + L Q   D    ++  
Sbjct: 61  NYLSQNPHFSISALSRYTQRDFIALV--------ERYRIAYHEKTLGQLFCDGSALQIIE 112

Query: 127 FNTEKNIISSIVMQDNSMIRC--STVVLTTGTFLRGVIHIGKLKIPAG 172
               +  +    ++    +     +V   +     G +    L +  G
Sbjct: 113 MLLAEMKLHGARLKLGCSVSSVEKSVEGFSLQLSDGPVSCRSLVVACG 160


>gi|226305028|ref|YP_002764986.1| dihydrolipoamide dehydrogenase [Rhodococcus erythropolis PR4]
 gi|229490139|ref|ZP_04383986.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
 gi|226184143|dbj|BAH32247.1| dihydrolipoamide dehydrogenase [Rhodococcus erythropolis PR4]
 gi|229322887|gb|EEN88661.1| dihydrolipoyl dehydrogenase [Rhodococcus erythropolis SK121]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YDV+V+G G  G  AA  AA+LG STA+I  K
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAIIEQK 36


>gi|255659090|ref|ZP_05404499.1| thioredoxin-disulfide reductase [Mitsuokella multacida DSM 20544]
 gi|260848534|gb|EEX68541.1| thioredoxin-disulfide reductase [Mitsuokella multacida DSM 20544]
          Length = 298

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          M     D++VIG G AG  AA  A + G +  ++T    T
Sbjct: 1  MKTEKTDLLVIGAGPAGISAALYARRGGLAVTVVTKGIET 40


>gi|163761257|ref|ZP_02168333.1| hypothetical protein HPDFL43_10891 [Hoeflea phototrophica DFL-43]
 gi|162281596|gb|EDQ31891.1| hypothetical protein HPDFL43_10891 [Hoeflea phototrophica DFL-43]
          Length = 573

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DVIV+GGG AG  AA+  A  G S  +I  +           ++GG
Sbjct: 28 DVIVVGGGLAGLVAASELADRGKSVVIIDQEPEQFLGGQAFWSLGG 73


>gi|115665179|ref|XP_783768.2| PREDICTED: similar to Sec14l1 protein [Strongylocentrotus
          purpuratus]
 gi|115939574|ref|XP_001191893.1| PREDICTED: similar to Sec14l1 protein [Strongylocentrotus
          purpuratus]
          Length = 1178

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIG 42
          +  YDVIVIG G +G  AA        G    ++  K   IG
Sbjct: 9  DGEYDVIVIGAGLSGLTAAYQLRNTIPGCKVIVLEAK-DRIG 49


>gi|91201313|emb|CAJ74373.1| strongly similar to dihydrolipoamide dehydrogenase of 2-oxoacid
          dehydrogenase (lipoamide) complex [Candidatus Kuenenia
          stuttgartiensis]
          Length = 472

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N ++D+ +IGGG AG  AA  AA+ G  TALI
Sbjct: 1  MSNSAFDLAIIGGGPAGYVAAIKAAQSGLKTALI 34


>gi|118466092|ref|YP_883815.1| dihydrolipoamide dehydrogenase [Mycobacterium avium 104]
 gi|254777124|ref|ZP_05218640.1| dihydrolipoamide dehydrogenase [Mycobacterium avium subsp. avium
          ATCC 25291]
 gi|48928150|gb|AAT47753.1| putative lipoamide dehydrogenase [Mycobacterium avium]
 gi|118167379|gb|ABK68276.1| dihydrolipoamide dehydrogenase [Mycobacterium avium 104]
          Length = 465

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+  +     G+ G      G  F
Sbjct: 61 HIFTKEAKTFGINGEATFDYGAAF 84


>gi|41410054|ref|NP_962890.1| dihydrolipoamide dehydrogenase [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41398887|gb|AAS06506.1| hypothetical protein MAP_3956 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 431

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      
Sbjct: 1  MTSHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+  +     G+ G      G  F
Sbjct: 61 HIFTKEAKTFGINGEATFDYGAAF 84


>gi|115361099|ref|YP_778236.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD]
 gi|115286427|gb|ABI91902.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD]
          Length = 444

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 83/242 (34%), Gaps = 29/242 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG  G  AA   A+ G S  ++        +     A G  G            
Sbjct: 46  DVVVIGGGFTGLSAALALAQRGVSVVVLE------AAQVAGEASGRNGGQCNTGVAQDYA 99

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVIQGEVA 125
            L  R+  A   QF         +V    T QA    +R A + ++ ++          A
Sbjct: 100 SLAARIGAAQAKQFYRAYESAVKSVETIVTEQAIDCDFRRAGKLKLAAKP------QHFA 153

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGT--FLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           G     N +   V  D  +I  S +    G+  F  G++     ++  G+        L 
Sbjct: 154 GLEKTFNALRRDVDPDIELIDASHIRDEVGSDGFYGGLLQRNGAQMHMGKF----GVGLA 209

Query: 184 NSFMKFDFDTGRLKTGTP-ARLDGK---------TIIWDKTEKQFADERLIPFSFMTDKI 233
            + ++           T   RLDG+         TI+ D+        +L PF++   +I
Sbjct: 210 QAAVRAGARVYEHAAVTQLERLDGERHTITSTRGTIVADRVLVATGASQLGPFAWFRRRI 269

Query: 234 TN 235
             
Sbjct: 270 AP 271


>gi|327439319|dbj|BAK15684.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Solibacillus silvestris StLB046]
          Length = 581

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 71/249 (28%), Gaps = 33/249 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID---- 63
           VIV+GGG AG  A   AA++G    L +          C    G  G  +   E D    
Sbjct: 6   VIVVGGGLAGLMATIKAAEVGTEVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGDSPWI 64

Query: 64  -----ALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD-RELYRLAMQRE 110
                   G        +  + DAA     +++       R P    D R      M R 
Sbjct: 65  HLDDTVYGGDFLANQPPVKGMCDAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTLMHRT 124

Query: 111 ILS-----QENLD-----VIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
             S     Q+ L      V   EVAG  T  E       V+ D  + R           +
Sbjct: 125 AFSGATTGQQLLYALDEQVRAHEVAGLVTKYEHWEFLGAVLDDEGVCRGIVAQDLRSEEI 184

Query: 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQF 218
           R       +    G           NS +        +        +G+ I    T    
Sbjct: 185 RSFRSDAVIMATGGPGIIFGKT--TNSVINTGSAASIVYQQGATYSNGEMIQIHPTAI-P 241

Query: 219 ADERLIPFS 227
            D++    S
Sbjct: 242 GDDKNRLMS 250


>gi|319442647|ref|ZP_07991803.1| putrescine oxidase [Corynebacterium variabile DSM 44702]
          Length = 504

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIG G AG  AA   AK G    +I
Sbjct: 12 DVVVIGAGPAGLTAAYTLAKAGKKVTVI 39


>gi|299148822|ref|ZP_07041884.1| FAD dependent oxidoreductase [Bacteroides sp. 3_1_23]
 gi|298513583|gb|EFI37470.1| FAD dependent oxidoreductase [Bacteroides sp. 3_1_23]
          Length = 344

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-------PAIGGL 53
          M  + YDVIV G G AG  AA  AA+ GA  AL        G +  N       P +G +
Sbjct: 1  MNTKYYDVIVAGAGPAGICAAVAAARQGARVAL----IERYGVIGGNLTAGYVGPILGSV 56

Query: 54 GKGHLVREIDALDGLMG 70
           K  +    DA+   + 
Sbjct: 57 SKNTIDCTGDAIVSFLA 73


>gi|317048689|ref|YP_004116337.1| FAD dependent oxidoreductase [Pantoea sp. At-9b]
 gi|316950306|gb|ADU69781.1| FAD dependent oxidoreductase [Pantoea sp. At-9b]
          Length = 443

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
             S DV+VIG G AG  A    AK G    L+
Sbjct: 14 FPESADVVVIGAGIAGSAATWELAKQGLKVVLV 46


>gi|257460122|ref|ZP_05625226.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
 gi|257442563|gb|EEV17702.1| flavocytochrome c flavin subunit [Campylobacter gracilis RM3268]
          Length = 516

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  +DV+++G G AG  A   AA+ G    +       +G +  N  I G
Sbjct: 38 FDEEWDVVIVGSGFAGLAAGITAAEKGNKVLI----LEKMGRVGGNSVING 84


>gi|255322762|ref|ZP_05363905.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
 gi|255300177|gb|EET79451.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
          Length = 518

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  +DV+++G G AG  A   AA+ G    +       +G +  N  I G
Sbjct: 40 FDEEWDVVIVGSGFAGLAAGITAAEKGNKVLI----LEKMGRVGGNSVING 86


>gi|299821930|ref|ZP_07053818.1| thioredoxin-disulfide reductase [Listeria grayi DSM 20601]
 gi|299817595|gb|EFI84831.1| thioredoxin-disulfide reductase [Listeria grayi DSM 20601]
          Length = 319

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  DKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|227486383|ref|ZP_03916699.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235564|gb|EEI85579.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 431

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVI++GGG AG  A+ V A+      L+                GG   GH + 
Sbjct: 1   MSEDKFDVIIVGGGVAGLAASIVLAENDLEVLLV----ERGDYCGAKNVTGGRLYGHSLE 56

Query: 61  ------------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
                       E   +   +  +++ + +     + + G              +   + 
Sbjct: 57  KIIPNFADEAPIERKVVKERISMMSEKSSLDIGYSSKELGENKDSSSYVVLHSKFDQYLA 116

Query: 109 REILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            +   +  + +I G  V     E+  +   +      +    V++  G
Sbjct: 117 EKAE-EAGVAIITGVLVEKLLLEEGKVVG-IDATGEEMYADAVIIADG 162


>gi|254523488|ref|ZP_05135543.1| 2-octaprenyl-6-methoxyphenol hydroxylase, putative
           [Stenotrophomonas sp. SKA14]
 gi|219721079|gb|EED39604.1| 2-octaprenyl-6-methoxyphenol hydroxylase, putative
           [Stenotrophomonas sp. SKA14]
          Length = 392

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G AG   A   A  G    L+  +   + + +       +   H  R+     
Sbjct: 5   DVVVVGAGPAGLCFARALAGSGLQVGLVDVQPRQVLAEAAFDG-REIALTHASRQSLEQL 63

Query: 67  GLMGRVADAAGIQF---RVLNVKKGPAVRGPRTQAD---------RELYRLAMQREILSQ 114
           GL  R+A A   +    RV+N     A+    +Q D           L R A    +  Q
Sbjct: 64  GLWQRLAQAEVAELRDARVMNGGSPFALTFASSQVDGQPLGWLVPNHLIRRAAWDAVQGQ 123

Query: 115 ENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           + L++  G +V G   +      + + D S +    +V     F  
Sbjct: 124 DGLELFDGRKVLGVQADAQGHV-VTLDDGSTLHARLLVAADSRFSA 168


>gi|120406024|ref|YP_955853.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
 gi|119958842|gb|ABM15847.1| FAD dependent oxidoreductase [Mycobacterium vanbaalenii PYR-1]
          Length = 520

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +D IV+G GH G  AAA+  + G  T  +  K    G  S      G
Sbjct: 3  DFDAIVVGAGHNGLTAAALLQRAGLRTLCLDAKLYAGGMASTVELFDG 50


>gi|6685411|sp|O65727|ERG11_BRANA RecName: Full=Squalene monooxygenase 1,1; AltName: Full=Squalene
           epoxidase 1,1; Short=SE 1,1
 gi|3123354|emb|CAA06773.1| squalene epoxidase homologue [Brassica napus]
          Length = 506

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGL---------GKG 56
           DVI++G G  G   A   AK G    +I       +  M      GG             
Sbjct: 49  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCL 108

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             + E  A    + +    A + F   N    P     R       +   ++++  S   
Sbjct: 109 EGIDEQIATGLAVYKDGQKALVSFPEDN--DFPYEPTGRA-FYNGRFVQRLRQKASSLPT 165

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 166 VQLEEGTVKSLIEEKGVIKGV 186


>gi|189346889|ref|YP_001943418.1| dihydrolipoamide dehydrogenase [Chlorobium limicola DSM 245]
 gi|189341036|gb|ACD90439.1| dihydrolipoamide dehydrogenase [Chlorobium limicola DSM 245]
          Length = 496

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++ R +D++VIG G  G  AA  AA+LG S A          S    P +GG 
Sbjct: 18 IMTRKFDILVIGAGPGGYIAAIRAAQLGFSVACCEFN--AYDSPEHEPRLGGT 68


>gi|328543134|ref|YP_004303243.1| oxidoreductase protein [polymorphum gilvum SL003B-26A1]
 gi|326412880|gb|ADZ69943.1| Putative oxidoreductase protein [Polymorphum gilvum SL003B-26A1]
          Length = 435

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIGGG AG   A   A+ G    L+  +    G+   N      G    +  ++   
Sbjct: 30 DVCVIGGGLAGLTTARELARRGRRVILLEGERIGWGASGRNAGFVSAGFSEGLDTLERRV 89

Query: 67 GL 68
          GL
Sbjct: 90 GL 91


>gi|309803352|ref|ZP_07697447.1| flavocytochrome c [Lactobacillus iners LactinV 11V1-d]
 gi|308164516|gb|EFO66768.1| flavocytochrome c [Lactobacillus iners LactinV 11V1-d]
          Length = 459

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVAHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKGVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|306807486|ref|ZP_07444154.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu007]
 gi|308378073|ref|ZP_07481433.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu009]
 gi|308346080|gb|EFP34931.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu007]
 gi|308353659|gb|EFP42510.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu009]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 2  REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 32


>gi|289758840|ref|ZP_06518218.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289714404|gb|EFD78416.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 306

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 62 REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 92


>gi|237736579|ref|ZP_04567060.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420441|gb|EEO35488.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 438

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 56/156 (35%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   +  VI+IG G+ G EA                               G    HL +
Sbjct: 133 LKEENRKVIIIGAGYIGLEA-------------------------------GEAARHLNK 161

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV- 119
           E+  +                        + R      D+E+  L M+ E+ + ENLD+ 
Sbjct: 162 EVKIIQ----------------------LSSRVLPGSFDKEITDL-MEEELNNTENLDLH 198

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           ++  V  F  +   +  +            V++  G
Sbjct: 199 LEESVEEFIAKDGKVVGVKTNKG-EYPADIVIVAIG 233


>gi|225374879|ref|ZP_03752100.1| hypothetical protein ROSEINA2194_00502 [Roseburia inulinivorans DSM
           16841]
 gi|225213262|gb|EEG95616.1| hypothetical protein ROSEINA2194_00502 [Roseburia inulinivorans DSM
           16841]
          Length = 415

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 26/172 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           V+VIGGG AG  AA  AA+ G    L          +     I G G+ ++    D    
Sbjct: 4   VVVIGGGPAGMSAAIAAAENGHHVTL----LEKNEKLGKKLFITGKGRCNITNSSDMDVL 59

Query: 65  LDGLM------GRVADAAGIQFRVLNVKKGP----AVRGPRT--QADRELYRLAMQREIL 112
            + +M           A   Q  +   ++        RG R    +D     +A  + +L
Sbjct: 60  FNSVMTNRKFLYSAFYAYDNQMVIDFFEQAGLPVKNERGNRIFPVSDHSSDVIAALQRVL 119

Query: 113 SQENLDVI-QGEVAGFNTEK------NIISSIVMQDNSMIRCSTVVLTTGTF 157
            ++ +++    EV     E         +  + + D   I+   V++ TG F
Sbjct: 120 KKDQVEIRLHSEVDTLLYEDSGEEEQKKVCGVRLSDGEKIQADDVIVATGGF 171


>gi|218509221|ref|ZP_03507099.1| glucose-inhibited division protein A [Rhizobium etli Brasil 5]
          Length = 203

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 27/174 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVREI 62
           DV++IGGG AGC AA  AA  GA + ++       GS     + G            REI
Sbjct: 22  DVLIIGGGPAGCWAALEAA--GAKSRVVLVDKGYCGSSGATASAGTQIWYVPPDPSEREI 79

Query: 63  -----DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----------LYRLA 106
                +A+ G +   +  A +  +        A  G     D +            Y   
Sbjct: 80  AMASREAMGGYLSERSWMAPVLDKTYESVNRLADWGYPFPVDEKGEQQRISVQGPEYMRL 139

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSI---VMQDN--SMIRCSTVVLTTG 155
           ++R + +     +         T+   +        Q+     +R   VVL  G
Sbjct: 140 LRRRVKNAGVTILDHHPATHLLTDGGTVVGASGLRRQEGGRWTVRAGAVVLAAG 193


>gi|149201968|ref|ZP_01878942.1| phytoene dehydrogenase [Roseovarius sp. TM1035]
 gi|149145016|gb|EDM33045.1| phytoene dehydrogenase [Roseovarius sp. TM1035]
          Length = 545

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          S+D I+IG GH G  AAA  A+ G    ++            N  IGG      + +
Sbjct: 6  SFDAIIIGAGHNGLTAAAYLARAGRQVLVVE----------KNDWIGGAAVSRSLHD 52


>gi|134099307|ref|YP_001104968.1| NADH:flavin oxidoreductase/NADH oxidase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911930|emb|CAM02043.1| NADH:flavin oxidoreductase/NADH oxidase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 657

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++V+G G AG EAA +AA  G +  +   +T  +G      +  G  + HL R +D L+G
Sbjct: 388 IVVVGAGPAGLEAARIAATRGHAVTIHE-RTGRLGGQVRLASTVGN-RPHLARHVDWLEG 445

Query: 68  LMGRVADAAGIQFR 81
            M R+     ++  
Sbjct: 446 EMNRLGVETRLESE 459


>gi|194336852|ref|YP_002018646.1| dihydrolipoamide dehydrogenase [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194309329|gb|ACF44029.1| dihydrolipoamide dehydrogenase [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 474

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R+ DV VIG G  G EAA  AAK G    LI
Sbjct: 13 RNVDVAVIGSGPGGYEAALRAAKAGMKVCLI 43


>gi|320589162|gb|EFX01624.1| pentachlorophenol 4-monooxygenase [Grosmannia clavigera kw1407]
          Length = 668

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V ++G G AG   AA  A+ G    +I  +          P   G   G   + I+    
Sbjct: 62  VCIVGAGPAGMMTAANLARFGIKVQVIDDRAD--------PTPVGRADGLQPKTIETF-- 111

Query: 68  LMGRVAD---AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
              R+AD     G++   +   +G   +          Y   +   +L    L V QG V
Sbjct: 112 RQMRLADPLLQRGVRVYDICFWRGTPEKELHRLGREVHYPTVID--VLDPYILLVHQGMV 169

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLT 153
                E      + ++ N+     +   T
Sbjct: 170 ENLFLEDIKKRGLDVRRNTAFESYSACDT 198


>gi|262091885|gb|ACY25435.1| putative halogenase [uncultured microorganism]
          Length = 540

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +IVIGGG AG  A+A+ A++G    L+                  +G+  L   I  L+ 
Sbjct: 7   IIVIGGGPAGSCASALLARMGLDVVLLE--RERFPRAH-------VGESLLPGSIPILES 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-VIQGEVAG 126
           L G + +     F V        + G     +RE +    +    +  +   V + E   
Sbjct: 58  L-GVMDEVRQAGFTV--KPGATMIWGT----EREPWSWYFRETHATYPHSYQVWRPEFDA 110

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH-----IGKLKIPAGRMGDSPSNS 181
                   S + +++   +    V    G+             G++++PAG + D+   S
Sbjct: 111 ILLNNARRSGVDVREGWQV-TRVVFDDDGSARAVRCRAVDGSSGEVELPAGYVVDASGQS 169


>gi|255712387|ref|XP_002552476.1| KLTH0C05786p [Lachancea thermotolerans]
 gi|238933855|emb|CAR22038.1| KLTH0C05786p [Lachancea thermotolerans]
          Length = 463

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          V VIG G  GC AA   AK G    L  ++  
Sbjct: 5  VAVIGAGLVGCLAAVALAKRGYEVTLFDYRLD 36


>gi|256380666|ref|YP_003104326.1| geranylgeranyl reductase [Actinosynnema mirum DSM 43827]
 gi|255924969|gb|ACU40480.1| geranylgeranyl reductase [Actinosynnema mirum DSM 43827]
          Length = 426

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +VIV+G G AG  AA   A+ G    L+
Sbjct: 10 DEDAEVIVVGAGPAGSTAATYLARAGLDVLLL 41


>gi|167766701|ref|ZP_02438754.1| hypothetical protein CLOSS21_01207 [Clostridium sp. SS2/1]
 gi|167711638|gb|EDS22217.1| hypothetical protein CLOSS21_01207 [Clostridium sp. SS2/1]
 gi|291558357|emb|CBL37157.1| conserved hypothetical protein TIGR00275 [butyrate-producing
           bacterium SSC/2]
          Length = 405

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 130/413 (31%), Gaps = 84/413 (20%)

Query: 22  AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV--REIDA--------------- 64
             AAK G   +L          +     I G G+ ++    EI+                
Sbjct: 17  YQAAKCGNDVSLY----EKNEKLGKKIFITGKGRCNVTNACEIEELLDHVVTNKEFLYSG 72

Query: 65  ----LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV- 119
                +  M    +  G   +V    +   V      +D     +A  +  L +EN+D+ 
Sbjct: 73  FYSFTNDAMMEFLEELGCPLKVERGNRVFPV------SDHSSDVIAALQRGLRKENVDIY 126

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
               V     E  I++ + +     ++   VV+ TG                 R      
Sbjct: 127 FNTTVKKILIEDGIVTGVRLASGDTVKADKVVVATGGMSYQATGSTGDGYDFARKAGHKV 186

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
             L  + + F+      K      L    +      K+  D+      F    I+   + 
Sbjct: 187 TKLTPALVPFEIKEDYCKQLMGLSLRNVAVTMTADGKKIYDD-FGEMLFTHFGISGPVVL 245

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE--- 296
              +         I +       +  D+K         ++ ++++   +  ++ F+    
Sbjct: 246 SASSY--------IGKYQGKELKFIIDLKP--ALNKEQLDHRVLKDFNKTLNKDFVNSLD 295

Query: 297 ---PEGLNTDVVYPNGISTA-----LPEEIQHQFIRTIP----------GLEKVNIIRPG 338
              P+ L   ++  +GI        + ++ + +F+  +           G ++  I + G
Sbjct: 296 HLLPKKLIPVMIELSGIPEHKKVNEITKKERERFVSLLKHLELTITGVRGFKEAIITQGG 355

Query: 339 YAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTGYEE 377
             ++   I+P     T+E+KKI GL+ AG              QI  +TGY  
Sbjct: 356 VNVKE--IDPG----TMESKKIKGLYFAGEVLDLDAVTGGFNLQIAWSTGYLA 402


>gi|120404127|ref|YP_953956.1| amine oxidase [Mycobacterium vanbaalenii PYR-1]
 gi|119956945|gb|ABM13950.1| amine oxidase [Mycobacterium vanbaalenii PYR-1]
          Length = 527

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV+V+GGGH G  AA   A+ G    ++  
Sbjct: 3  DVLVVGGGHNGLIAALRLARAGRRVTVVEQ 32


>gi|152996773|ref|YP_001341608.1| sarcosine oxidase subunit beta family protein [Marinomonas sp.
           MWYL1]
 gi|150837697|gb|ABR71673.1| sarcosine oxidase, beta subunit family [Marinomonas sp. MWYL1]
          Length = 417

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 63  DALDGLMGRVADAAGIQFRVL-----NVKKGP---AVRGPRTQADRELYRLAMQREILSQ 114
           + L+G+ G V DA  +Q  V      +  + P   A   PR    R              
Sbjct: 138 NRLNGIDGEVLDAKQVQEIVPVLDCSDRARYPVMGASWQPRAGVARHDAVAWGFARGADA 197

Query: 115 ENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152
             +D+IQ  EV     E   +  +       IR   V  
Sbjct: 198 HGVDLIQQTEVEDLIIEDGTVVGVRTARYGEIRADKVGC 236


>gi|39946826|ref|XP_362950.1| hypothetical protein MGG_08487 [Magnaporthe oryzae 70-15]
 gi|145012326|gb|EDJ96982.1| hypothetical protein MGG_08487 [Magnaporthe oryzae 70-15]
          Length = 545

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++YD IV+GGG AG  AA   A+ G    L+
Sbjct: 27 KQTYDHIVVGGGQAGIVAATRLAQTGKHVLLL 58


>gi|167970064|ref|ZP_02552341.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis H37Ra]
 gi|215412519|ref|ZP_03421253.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis 94_M4241A]
 gi|215431652|ref|ZP_03429571.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis EAS054]
 gi|218754449|ref|ZP_03533245.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis GM 1503]
 gi|253798205|ref|YP_003031206.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis KZN 1435]
 gi|254551769|ref|ZP_05142216.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis '98-R604 INH-RIF-EM']
 gi|260206022|ref|ZP_05773513.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis K85]
 gi|297635321|ref|ZP_06953101.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis KZN 4207]
 gi|313659650|ref|ZP_07816530.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis KZN V2475]
 gi|253319708|gb|ACT24311.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis KZN 1435]
          Length = 471

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 5  REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 35


>gi|71064685|ref|YP_263412.1| dihydrolipoamide dehydrogenase [Psychrobacter arcticus 273-4]
 gi|71037670|gb|AAZ17978.1| dihydrolipoamide dehydrogenase [Psychrobacter arcticus 273-4]
          Length = 483

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYD++VIGGG  G EAA  A +LG S A I
Sbjct: 1  MKDSYDLVVIGGGPGGYEAAIRAGQLGMSVACI 33


>gi|15609850|ref|NP_217229.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis H37Rv]
 gi|15842251|ref|NP_337288.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis CDC1551]
 gi|31793885|ref|NP_856378.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium bovis
          AF2122/97]
 gi|121638588|ref|YP_978812.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148662554|ref|YP_001284077.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis H37Ra]
 gi|148823902|ref|YP_001288656.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis F11]
 gi|215404678|ref|ZP_03416859.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis 02_1987]
 gi|224991080|ref|YP_002645769.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|254365370|ref|ZP_04981415.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis str. Haarlem]
 gi|260187730|ref|ZP_05765204.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis CPHL_A]
 gi|289448368|ref|ZP_06438112.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis CPHL_A]
 gi|289553502|ref|ZP_06442712.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis KZN 605]
 gi|289575411|ref|ZP_06455638.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis K85]
 gi|289746515|ref|ZP_06505893.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis 02_1987]
 gi|289754815|ref|ZP_06514193.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis EAS054]
 gi|289762884|ref|ZP_06522262.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis GM 1503]
 gi|297732317|ref|ZP_06961435.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis KZN R506]
 gi|298526183|ref|ZP_07013592.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306798618|ref|ZP_07436920.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu006]
 gi|308232220|ref|ZP_07415329.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu001]
 gi|308369835|ref|ZP_07419232.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu002]
 gi|308371107|ref|ZP_07423842.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu003]
 gi|308372375|ref|ZP_07428438.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu004]
 gi|308373486|ref|ZP_07432502.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu005]
 gi|308377105|ref|ZP_07441145.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu008]
 gi|308379291|ref|ZP_07485768.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu010]
 gi|308380450|ref|ZP_07489986.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu011]
 gi|308405948|ref|ZP_07494521.2| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu012]
 gi|54039637|sp|P66007|STHA_MYCBO RecName: Full=Probable soluble pyridine nucleotide
          transhydrogenase; Short=STH; AltName: Full=NAD(P)(+)
          transhydrogenase [B-specific]
 gi|54042093|sp|P66006|STHA_MYCTU RecName: Full=Probable soluble pyridine nucleotide
          transhydrogenase; Short=STH; AltName: Full=NAD(P)(+)
          transhydrogenase [B-specific]
 gi|166223479|sp|A1KM51|STHA_MYCBP RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|166223480|sp|A5U665|STHA_MYCTA RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|254778403|sp|C1AFH2|STHA_MYCBT RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|2182004|emb|CAB09473.1| PROBABLE SOLUBLE PYRIDINE NUCLEOTIDE TRANSHYDROGENASE STHA (STH)
          (NAD(P)(+) TRANSHYDROGENASE [B-SPECIFIC]) (NICOTINAMIDE
          NUCLEOTIDE TRANSHYDROGENASE) [Mycobacterium
          tuberculosis H37Rv]
 gi|13882542|gb|AAK47102.1| oxidoreductase, pyridine nucleotide-disulphide family
          [Mycobacterium tuberculosis CDC1551]
 gi|31619479|emb|CAD94917.1| PROBABLE SOLUBLE PYRIDINE NUCLEOTIDE TRANSHYDROGENASE STHA (STH)
          (NAD(P)(+) TRANSHYDROGENASE [B-SPECIFIC]) (NICOTINAMIDE
          NUCLEOTIDE TRANSHYDROGENASE) [Mycobacterium bovis
          AF2122/97]
 gi|121494236|emb|CAL72714.1| Probable soluble pyridine nucleotide transhydrogenase sthA
          [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134150883|gb|EBA42928.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148506706|gb|ABQ74515.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis H37Ra]
 gi|148722429|gb|ABR07054.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis F11]
 gi|224774195|dbj|BAH27001.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|289421326|gb|EFD18527.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis CPHL_A]
 gi|289438134|gb|EFD20627.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis KZN 605]
 gi|289539842|gb|EFD44420.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis K85]
 gi|289687043|gb|EFD54531.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis 02_1987]
 gi|289695402|gb|EFD62831.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis EAS054]
 gi|289710390|gb|EFD74406.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis GM 1503]
 gi|298495977|gb|EFI31271.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308214649|gb|EFO74048.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu001]
 gi|308326296|gb|EFP15147.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu002]
 gi|308329824|gb|EFP18675.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu003]
 gi|308333467|gb|EFP22318.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu004]
 gi|308337462|gb|EFP26313.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu005]
 gi|308341135|gb|EFP29986.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu006]
 gi|308348961|gb|EFP37812.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu008]
 gi|308357506|gb|EFP46357.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu010]
 gi|308361460|gb|EFP50311.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu011]
 gi|308365054|gb|EFP53905.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis SUMu012]
 gi|323718707|gb|EGB27869.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis CDC1551A]
 gi|326904329|gb|EGE51262.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis W-148]
 gi|328457978|gb|AEB03401.1| soluble pyridine nucleotide transhydrogenase sthA [Mycobacterium
          tuberculosis KZN 4207]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 2  REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 32


>gi|332528740|ref|ZP_08404717.1| hypothetical protein HGR_02498 [Hylemonella gracilis ATCC 19624]
 gi|332041806|gb|EGI78155.1| hypothetical protein HGR_02498 [Hylemonella gracilis ATCC 19624]
          Length = 437

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + +DV+VIG G AG   A VA + G    LI H
Sbjct: 2  QQFDVVVIGAGAAGLFCAGVAGQRGLKVLLIDH 34


>gi|327462211|gb|EGF08538.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK1]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|291007307|ref|ZP_06565280.1| NADH:flavin oxidoreductase/NADH oxidase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 658

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++V+G G AG EAA +AA  G +  +   +T  +G      +  G  + HL R +D L+G
Sbjct: 389 IVVVGAGPAGLEAARIAATRGHAVTIHE-RTGRLGGQVRLASTVGN-RPHLARHVDWLEG 446

Query: 68  LMGRVADAAGIQFR 81
            M R+     ++  
Sbjct: 447 EMNRLGVETRLESE 460


>gi|270294632|ref|ZP_06200834.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276099|gb|EFA21959.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 540

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 58/178 (32%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMS-----CNPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQISRQQLVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDVIQ--GEV------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +IQ  GEV           EK+ +  I            V+L TG   R V 
Sbjct: 199 NMRN-TIIQCGGEVHFETRMDALLIEKDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|259417016|ref|ZP_05740936.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Silicibacter sp.
           TrichCH4B]
 gi|259348455|gb|EEW60232.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Silicibacter sp.
           TrichCH4B]
          Length = 399

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-----TSTIGSMSCNPAIGGLGK 55
           M++ + D+++ GGG AG  AAA  A  G S   +            G+     A     K
Sbjct: 1   MMSETCDILISGGGIAGLTAAATFAARGFSVICVDPTAPVTAREDAGADLRTTAFLQPAK 60

Query: 56  GHLVREID-------ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             L            A    + R+ DA G +     V++  A           L    ++
Sbjct: 61  SLLEDAGLWARLAPYAAPLQIMRIIDAGGAEPEPRVVREFNAAEISELPFGWNLPNWLLR 120

Query: 109 REILSQENL----DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE+LS+ N     +   G        +   + + + D + +RC  V+   G
Sbjct: 121 REMLSRINELANAEFRPGVGTQSLFTRTGEARVTLSDGARVRCKLVLACDG 171


>gi|256396230|ref|YP_003117794.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Catenulispora acidiphila DSM 44928]
 gi|256362456|gb|ACU75953.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Catenulispora acidiphila DSM 44928]
          Length = 409

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +S+ V V+G G AG E AA  A+ G +  L+T
Sbjct: 153 KSFAVTVVGAGPAGIETAAELAEQGRAVTLVT 184


>gi|227903561|ref|ZP_04021366.1| thioredoxin reductase [Lactobacillus acidophilus ATCC 4796]
 gi|227868448|gb|EEJ75869.1| thioredoxin reductase [Lactobacillus acidophilus ATCC 4796]
          Length = 314

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVIVIG G  G  AA  A +   +  ++
Sbjct: 7  MADKYDVIVIGAGPGGMTAALYATRANLNVLVL 39


>gi|167583802|ref|ZP_02376190.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ubonensis Bu]
          Length = 406

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 22/168 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-DALD 66
           V V+GGG  G E AA A +LG +  ++                       L R + D + 
Sbjct: 148 VAVLGGGFIGLEVAAAARQLGCAVTVV-----------------DPAARLLQRALPDVVG 190

Query: 67  GLMGRVADAAGIQFR---VLNVKKGPAVRGPRTQAD-RELYRLAMQREILSQENLDVIQG 122
               R+ D  G++FR   +    +  A  G   + D  ++    +   I    N+++ Q 
Sbjct: 191 AFAQRMHDGRGVEFRLSALPRAIRRGAAGGAVVETDGGDVTADIVVVGIGVVPNVELAQA 250

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                +    + +     D ++     V +     L   + I   ++ 
Sbjct: 251 AGLDVDNGVRVDAGCRTSDRAIFAAGEVTMHFNPLLGRHVRIESWQVA 298


>gi|123965819|ref|YP_001010900.1| NAD binding site [Prochlorococcus marinus str. MIT 9515]
 gi|123200185|gb|ABM71793.1| NAD binding site [Prochlorococcus marinus str. MIT 9515]
          Length = 377

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 16/159 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-- 61
           + +D I+IGGG +G   A   +K G S  +         +    P  GG+          
Sbjct: 2   KEFDAIIIGGGLSGSSTALNLSKKGYSVLI----IEKEATGIIKPCAGGMASSMKQYLPL 57

Query: 62  --IDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
               A++  +        +          + P     R + D+ L   A++  I      
Sbjct: 58  DIDQAIESKIRNVEFRWESSDNVNADLSGESPFWIIRREKLDQLLLDEALKNGIE----- 112

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +   +V    ++      I      + +   +V+  G+
Sbjct: 113 ILRPAQVEEIISQN-KTWRIKCSHKDIYKSKYLVIADGS 150


>gi|89365957|gb|AAI14430.1| Eukaryotic translation initiation factor 3, subunit A [Homo
           sapiens]
          Length = 1382

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|118382796|ref|XP_001024554.1| hypothetical protein TTHERM_00300270 [Tetrahymena thermophila]
 gi|89306321|gb|EAS04309.1| hypothetical protein TTHERM_00300270 [Tetrahymena thermophila
           SB210]
          Length = 1010

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 26/184 (14%)

Query: 409 GVMIDDLTSKGVLEPYRMFTSRAEYRISL-RPDNADNRLTPIGMKLGCIGERRQKRFAKY 467
            ++++ +  K  L P+    +  +Y  SL R  N          ++G   +  Q++ A  
Sbjct: 576 SLLVNSILLKNKLNPHNPTPNYQKYNESLQRKSN---------QQVGNNSK-LQEKIASL 625

Query: 468 IQEYNFLRSLLKSLVLTSKNLSSTSISFK-QDGKTRTAYEFLSYPDFSIQN--LFSICPD 524
             E    R L+++L L  +N++  S   K ++ + +     L     + +   L S    
Sbjct: 626 ESEIEAYRHLIETLALEMENVNKESQRIKNENSELKQRIGELQMDIMNYREKLLKSDLIQ 685

Query: 525 ARKF--SSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKE 582
              F     + E+ +          +   E +++K E ++LI          ++S++L+E
Sbjct: 686 RSAFEKDQEIEEKDKELQKVQKRVEKHKSEIEKLKREREQLI----------SISSDLRE 735

Query: 583 KLSI 586
           KL  
Sbjct: 736 KLQE 739


>gi|58337001|ref|YP_193586.1| thioredoxin reductase [Lactobacillus acidophilus NCFM]
 gi|58254318|gb|AAV42555.1| thioredoxin reductase [Lactobacillus acidophilus NCFM]
          Length = 308

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVIVIG G  G  AA  A +   +  ++
Sbjct: 1  MADKYDVIVIGAGPGGMTAALYATRANLNVLVL 33


>gi|77461062|ref|YP_350569.1| FAD dependent oxidoreductase [Pseudomonas fluorescens Pf0-1]
 gi|77385065|gb|ABA76578.1| glycine oxidase [Pseudomonas fluorescens Pf0-1]
          Length = 366

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 105 LAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
            +++  + +  N+ + +  EV+GF  E   +  +       I    VVLT G +   ++ 
Sbjct: 155 KSLKAALQALPNVTIHEQCEVSGFVREGERVVGVQTSTGL-ITGDQVVLTAGAWSGELLK 213

Query: 164 IGKLKIPAGRMGDSP--SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
              L +P   +           +         GR       R DG  +I    E +  D+
Sbjct: 214 NLDLSLPVEPVKGQMILYKCAADFLPSMVLAKGRYAI---PRRDGHILIGSTLEHEGFDK 270

Query: 222 RLI 224
              
Sbjct: 271 TPT 273


>gi|260574431|ref|ZP_05842435.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodobacter sp. SW2]
 gi|259023327|gb|EEW26619.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodobacter sp. SW2]
          Length = 677

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG EAA VAA+ G    + 
Sbjct: 388 VVVVGAGPAGLEAARVAAERGHQVTVF 414


>gi|126664941|ref|ZP_01735924.1| soluble pyridine nucleotide transhydrogenase [Marinobacter sp.
          ELB17]
 gi|126630311|gb|EBA00926.1| soluble pyridine nucleotide transhydrogenase [Marinobacter sp.
          ELB17]
          Length = 463

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    YDV+VIG G +G  AA  A K G   A++  K +  G+ +    I      H V+
Sbjct: 1  MPEHHYDVVVIGAGPSGEGAAMNATKNGKRVAIVEDKNTVGGNCTHWGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|116626332|ref|YP_828488.1| hypothetical protein Acid_7292 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229494|gb|ABJ88203.1| putative secreted protein, putative xanthan lyase related
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 547

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 36/183 (19%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI- 62
           +++D +V GG   G   A  AA+ G   AL+               +GG+  G L R   
Sbjct: 18  QTFDFVVYGGTAGGVVTAVSAAREGLKVALLEPGR----------HLGGMATGGLSRTDF 67

Query: 63  ---DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-----RLAMQREILSQ 114
              + + G+        G+++ +            R   +   Y        + RE+L Q
Sbjct: 68  GKKEVIGGMALEFYWRVGLKYDI-----------GRFANEVAWYYEPHVGEQVFREMLEQ 116

Query: 115 ENLDVIQG----EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
             + V+      E  G      +I++I  +D +  R       T  +   ++    ++  
Sbjct: 117 AGVTVLFNHRLKEHGGVAKSGAMITAITTEDGATFRARAFADCT--YEGDLMAQANVQYT 174

Query: 171 AGR 173
            GR
Sbjct: 175 FGR 177


>gi|238022724|ref|ZP_04603150.1| hypothetical protein GCWU000324_02633 [Kingella oralis ATCC
          51147]
 gi|237865927|gb|EEP67063.1| hypothetical protein GCWU000324_02633 [Kingella oralis ATCC
          51147]
          Length = 406

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV++IG G AG  AA +  + G S  +I
Sbjct: 1  MAKQYDVVIIGAGPAGSVAALLLRQQGFSVCVI 33


>gi|126731479|ref|ZP_01747285.1| probable methylamine [Sagittula stellata E-37]
 gi|126708015|gb|EBA07075.1| probable methylamine [Sagittula stellata E-37]
          Length = 689

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +V+VIG G AG EAA    + G   A+
Sbjct: 389 NVLVIGSGPAGLEAAWALCRRGYDVAV 415


>gi|167035769|ref|YP_001671000.1| hypothetical protein PputGB1_4778 [Pseudomonas putida GB-1]
 gi|166862257|gb|ABZ00665.1| HI0933 family protein [Pseudomonas putida GB-1]
          Length = 413

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
          +VIGGG AG  AA   A+ G S  +       + S+     + G+G  ++    +     
Sbjct: 13 VVIGGGPAGLMAAEALAQAGLSVEVF----DAMPSVGRKFLLAGVGGMNITHS-EPYSAF 67

Query: 69 MGRVADAAGIQFRVLNVKKGPAVR 92
          + R A+  G    +L      A+R
Sbjct: 68 VARYAERQGEIEALLRDFDADALR 91


>gi|94969598|ref|YP_591646.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Koribacter versatilis Ellin345]
 gi|94551648|gb|ABF41572.1| succinate dehydrogenase subunit A [Candidatus Koribacter
          versatilis Ellin345]
          Length = 593

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +IV+GGG AG  A    A++G    L +          C        K +L  E D
Sbjct: 7  IIVVGGGLAGLSAVIKIAEMGGHVDLFSIVPVKRSHSVCAQGGINAAK-NLKGEGD 61


>gi|32449796|gb|AAH54342.1| EIF3A protein [Homo sapiens]
          Length = 812

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|83942919|ref|ZP_00955379.1| hypothetical protein EE36_12098 [Sulfitobacter sp. EE-36]
 gi|83845927|gb|EAP83804.1| hypothetical protein EE36_12098 [Sulfitobacter sp. EE-36]
          Length = 434

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          ++  DV V+GGG+ G  AA   A+ G    L+  +    G+   N   G LG G  V E 
Sbjct: 34 DQRADVCVVGGGYTGLSAALHLAQAGRRVVLVEAQRVGFGASGRNG--GQLGSGQRV-EQ 90

Query: 63 DALDGLMGR 71
          DAL+ ++GR
Sbjct: 91 DALEKMVGR 99


>gi|121601923|ref|YP_988366.1| dihydrolipoamide dehydrogenase [Bartonella bacilliformis KC583]
 gi|120614100|gb|ABM44701.1| dihydrolipoamide dehydrogenase [Bartonella bacilliformis KC583]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          SYDV++IG G  G  AA  AA+LG  TA+I  K  T+G    ++ C P+
Sbjct: 2  SYDVVIIGAGPGGYVAAIKAAQLGLKTAIIE-KRETLGGTCLNVGCIPS 49


>gi|330999943|ref|ZP_08323641.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329573350|gb|EGG54962.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 490

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           N  +D++++G G AG  AA  A K G    LI  K    G  SC
Sbjct: 20 FNEVHDLVIVGSGFAGLSAAYAALKDGVKDILILDKMEAFGGNSC 64


>gi|326693655|ref|ZP_08230660.1| thioredoxin-disulfide reductase [Leuconostoc argentinum KCTC
          3773]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDV++IG G AG  AA  A++   S  ++
Sbjct: 5  KQYDVVIIGAGPAGMTAATYASRADLSVLML 35


>gi|326390295|ref|ZP_08211855.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993740|gb|EGD52172.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 667

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
            ++ +V+VIGGG AG EAA + A  G   +L   K  T+G
Sbjct: 404 EKTKNVMVIGGGVAGMEAARICASRGHKVSLYE-KGDTLG 442


>gi|325694506|gb|EGD36415.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK150]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|310765730|gb|ADP10680.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Erwinia sp. Ejp617]
          Length = 394

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DVIVIG G AG   AA A + G    L                + G G+ +
Sbjct: 2  EKFDVIVIGAGAAGLFCAAQAGQKGRRVLL----IDNGKKAGRKILMSGGGRCN 51


>gi|302523876|ref|ZP_07276218.1| electron transfer oxidoreductase [Streptomyces sp. AA4]
 gi|302432771|gb|EFL04587.1| electron transfer oxidoreductase [Streptomyces sp. AA4]
          Length = 440

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +VIV+G G AG  AA   A+ G    L+
Sbjct: 23 EVIVVGAGPAGSTAATYLARAGVDVLLL 50


>gi|283779345|ref|YP_003370100.1| hypothetical protein Psta_1565 [Pirellula staleyi DSM 6068]
 gi|283437798|gb|ADB16240.1| hypothetical protein Psta_1565 [Pirellula staleyi DSM 6068]
          Length = 692

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 31/224 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPAIGGLGKGHLV 59
           N ++DV+V GG   G  AA    ++G +  LI    H             IG  G     
Sbjct: 27  NDTFDVVVYGGTSGGIAAAIQTRRMGKTVVLIEPTKHVGGLTTGGLGATDIGNKG----- 81

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG---PAV-----RGPRTQADRELY-----RLA 106
               A+ G+           +      K    PA      R    Q D            
Sbjct: 82  ----AIGGISREFYQRVRKHYSDPAAWKFGKQPAGYDSGRRSEVGQEDAMWTFEPSVAEQ 137

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISS----IVMQDNSMIRCSTVVLTTGTFLRGVI 162
           + R++L++  +DVI GE          +      I M+     +    +  T  +   ++
Sbjct: 138 IYRDMLAEAKVDVIYGERLDLKKGVTKVEGQIQSIQMESGRKFQGKRFIDAT--YEGDLL 195

Query: 163 HIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
            +  +    GR  ++      N     +    +L+ G    +  
Sbjct: 196 ALAGVSYHVGREANAVYGETLNGVQTKNAVKHQLQPGVDPYVKA 239


>gi|255027909|ref|ZP_05299895.1| hypothetical protein LmonocytFSL_18771 [Listeria monocytogenes FSL
           J2-003]
          Length = 206

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V++IGGG AG  AA +AA LGA+  ++      +  +
Sbjct: 169 EVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLREL 206


>gi|253681257|ref|ZP_04862055.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253562495|gb|EES91946.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 414

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 22/94 (23%)

Query: 313 ALPEEIQHQFIRTIP----------GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISG 362
            L  + ++   + I           G     +   G   E   I+      TLE+K I  
Sbjct: 325 NLTWQEKNAIFKLIKDWEFEVIDTNGFNNAQVTSGGVNTEE--IDST----TLESKLIPN 378

Query: 363 LFLAGQINGTTGYEE------AAAQGLVAGINSA 390
           L+  G+I    G         A + G++A  N+ 
Sbjct: 379 LYFCGEIMDVDGDCGGFNLQWAWSSGMIASNNAC 412


>gi|227824539|ref|ZP_03989371.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905038|gb|EEH90956.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 558

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHK--------TSTIGSMSCNPAIGGLGKGH 57
           YDV++IGGG AG  AA   A+      ++  +        T  + +    P+I G+    
Sbjct: 21  YDVLIIGGGPAGLTAALYLARARYRVLVLEKEKFGGQITITQRVVNYPGVPSISGMALAE 80

Query: 58  LVREIDALDGLMGRVADAAGIQ 79
            +R      G    +A+  G++
Sbjct: 81  TIRRQAESFGAEVILAEVTGLE 102


>gi|259910143|ref|YP_002650499.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Erwinia pyrifoliae Ep1/96]
 gi|224965765|emb|CAX57297.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Erwinia pyrifoliae Ep1/96]
          Length = 394

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DVIVIG G AG   AA A + G    L                + G G+ +
Sbjct: 2  EKFDVIVIGAGAAGLFCAAQAGQKGRRVLL----IDNGKKAGRKILMSGGGRCN 51


>gi|222149693|ref|YP_002550650.1| putative FAD-binding dehydrogenase [Agrobacterium vitis S4]
 gi|221736675|gb|ACM37638.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 552

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVIV+G G AG  AA  AA  G +  ++
Sbjct: 2  NEFDVIVVGAGLAGLVAATEAAGRGLTVCVV 32


>gi|239814160|ref|YP_002943070.1| glutamate synthase subunit beta [Variovorax paradoxus S110]
 gi|239800737|gb|ACS17804.1| glutamate synthase, NADH/NADPH, small subunit [Variovorax paradoxus
           S110]
          Length = 492

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC--NPAIGGLGKGHL---VREI 62
           V V+G G AG  AA   A+ G    L       IG +     P    + K H+   V ++
Sbjct: 146 VAVVGSGPAGMAAAQQLARAGHDVTLFEKN-DRIGGLLRYGIPDFK-MEKTHIDRRVEQM 203

Query: 63  DALD-----GLM-GRVADAAGIQFRVLNVKK 87
            A       G+M G   D  G   +V N+ K
Sbjct: 204 KAEGVSFRTGVMVGAAKDPLGKGSKVTNLAK 234


>gi|188535427|ref|YP_001909224.1| hypothetical protein ETA_33170 [Erwinia tasmaniensis Et1/99]
 gi|188030469|emb|CAO98363.1| Putative exported protein [Erwinia tasmaniensis Et1/99]
          Length = 422

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DVIVIG G AG   AA A + G    L                + G G+ +
Sbjct: 30 EKFDVIVIGAGAAGLFCAAQAGQKGRRVLL----IDNGKKAGRKILMSGGGRCN 79


>gi|148560222|ref|YP_001259743.1| dihydrolipoamide dehydrogenase [Brucella ovis ATCC 25840]
 gi|148371479|gb|ABQ61458.1| dihydrolipoyl dehydrogenase [Brucella ovis ATCC 25840]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM---QREILSQENLDVIQ 121
                  V   +G  F  L V+  P +   +  A ++    A       +  +  +    
Sbjct: 56  -----SEVFAESGHSFDTLGVEVTPKLNLTKMLAHKDTTVKANVSGVEFLFKKNKITPYI 110

Query: 122 GEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 111 G--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|86142037|ref|ZP_01060561.1| FAD dependent oxidoreductase [Leeuwenhoekiella blandensis MED217]
 gi|85831600|gb|EAQ50056.1| FAD dependent oxidoreductase [Leeuwenhoekiella blandensis MED217]
          Length = 530

 Score = 42.2 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI--GG-----LGK 55
           + +DVIVIGGG  G   A  +A  G  T L+       G+ S +  +  GG      G 
Sbjct: 17 TKKWDVIVIGGGATGLGVALDSATRGYKTLLLEQVDYAKGTSSRSTKLVHGGVRYLAQGD 76

Query: 56 GHLVREIDALDGLMGRVA 73
            LV+E     GL+ + A
Sbjct: 77 IDLVKEALYERGLLAQNA 94


>gi|309808210|ref|ZP_07702120.1| flavocytochrome c [Lactobacillus iners LactinV 01V1-a]
 gi|308168591|gb|EFO70699.1| flavocytochrome c [Lactobacillus iners LactinV 01V1-a]
          Length = 459

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V     +    + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHISVFNNAKVVELIHKDQDFA-IKLENGQLISAKGVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|242398627|ref|YP_002994051.1| Dye-L-proDH alpha [Thermococcus sibiricus MM 739]
 gi|242265020|gb|ACS89702.1| Dye-L-proDH alpha [Thermococcus sibiricus MM 739]
          Length = 477

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           DVIV+GGG AG  AA  A+  GA   L+    
Sbjct: 120 DVIVVGGGPAGMMAAINASDGGAKVVLLDENP 151


>gi|269838178|ref|YP_003320406.1| FAD dependent oxidoreductase [Sphaerobacter thermophilus DSM
          20745]
 gi|269787441|gb|ACZ39584.1| FAD dependent oxidoreductase [Sphaerobacter thermophilus DSM
          20745]
          Length = 520

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD IVIG GH G  AA   A+ G     +
Sbjct: 1  MVEHYDAIVIGTGHNGLIAAGYLARAGKRVLAL 33


>gi|227821955|ref|YP_002825926.1| soluble pyridine nucleotide transhydrogenase [Sinorhizobium
          fredii NGR234]
 gi|227340955|gb|ACP25173.1| pyridine nucleotide-disulphide oxidoreductasedimerisation region
          [Sinorhizobium fredii NGR234]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
            +D+IV+G G AG   A  AAKLG    +I  
Sbjct: 2  NQFDLIVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|126732102|ref|ZP_01747904.1| probable oxidoreductase [Sagittula stellata E-37]
 gi|126707391|gb|EBA06455.1| probable oxidoreductase [Sagittula stellata E-37]
          Length = 429

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG  G  AA   A+ G   AL+
Sbjct: 26 YDVVVIGGGFTGLNAARKLAREGVRVALL 54


>gi|114633007|ref|XP_001153575.1| PREDICTED: eukaryotic translation initiation factor 3 subunit A
           isoform 1 [Pan troglodytes]
          Length = 1382

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|330001528|ref|ZP_08304029.1| flavoprotein family protein [Klebsiella sp. MS 92-3]
 gi|328537639|gb|EGF63856.1| flavoprotein family protein [Klebsiella sp. MS 92-3]
          Length = 404

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 9  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 39


>gi|327460358|gb|EGF06695.1| acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase
           [Streptococcus sanguinis SK1057]
          Length = 568

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  AA  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVAAIKAAQLGGKIALV 141


>gi|311894962|dbj|BAJ27370.1| hypothetical protein KSE_15430 [Kitasatospora setae KM-6054]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDV+++GGGH G  AA    + G    ++
Sbjct: 1  MTVAYDVVIVGGGHNGLVAAGYLGRAGLRVLVL 33


>gi|290511922|ref|ZP_06551290.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|289775712|gb|EFD83712.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 404

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 9  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 39


>gi|288933128|ref|YP_003437187.1| HI0933 family protein [Klebsiella variicola At-22]
 gi|288887857|gb|ADC56175.1| HI0933 family protein [Klebsiella variicola At-22]
          Length = 397

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 2  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 32


>gi|262040559|ref|ZP_06013800.1| FAD-dependent oxidoreductase [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259042152|gb|EEW43182.1| FAD-dependent oxidoreductase [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 404

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 9  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 39


>gi|256397248|ref|YP_003118812.1| FAD dependent oxidoreductase [Catenulispora acidiphila DSM 44928]
 gi|256363474|gb|ACU76971.1| FAD dependent oxidoreductase [Catenulispora acidiphila DSM 44928]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +DV+V+GGGH    AAA  A+ G    L+  +   +G  + + +        L R
Sbjct: 31 HDVVVVGGGHNALVAAAFLARAGMRVTLLE-RLDAVGGAAVSASPFAGVDARLSR 84


>gi|238896955|ref|YP_002921700.1| putative oxidoreductase [Klebsiella pneumoniae NTUH-K2044]
 gi|238549282|dbj|BAH65633.1| putative oxidoreductase [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
          Length = 397

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 2  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 32


>gi|229488765|ref|ZP_04382631.1| soluble pyridine nucleotide transhydrogenase [Rhodococcus
          erythropolis SK121]
 gi|229324269|gb|EEN90024.1| soluble pyridine nucleotide transhydrogenase [Rhodococcus
          erythropolis SK121]
          Length = 470

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++VIG G  G +AA  AAKLG   A++
Sbjct: 6  EYDLVVIGSGPGGQKAAIAAAKLGKRVAMV 35


>gi|227545110|ref|ZP_03975159.1| thioredoxin-disulfide reductase [Lactobacillus reuteri CF48-3A]
 gi|300909218|ref|ZP_07126679.1| thioredoxin-disulfide reductase [Lactobacillus reuteri SD2112]
 gi|227184898|gb|EEI64969.1| thioredoxin-disulfide reductase [Lactobacillus reuteri CF48-3A]
 gi|300893083|gb|EFK86442.1| thioredoxin-disulfide reductase [Lactobacillus reuteri SD2112]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N+ YDV++IG G  G  AA  A++   S  ++
Sbjct: 4  NKQYDVVIIGAGPGGMTAAMYASRANLSVLML 35


>gi|226308223|ref|YP_002768183.1| soluble pyridine nucleotide transhydrogenase [Rhodococcus
          erythropolis PR4]
 gi|226187340|dbj|BAH35444.1| probable soluble pyridine nucleotide transhydrogenase
          [Rhodococcus erythropolis PR4]
          Length = 470

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++VIG G  G +AA  AAKLG   A++
Sbjct: 6  EYDLVVIGSGPGGQKAAIAAAKLGKRVAMV 35


>gi|206576212|ref|YP_002236132.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Klebsiella pneumoniae 342]
 gi|206565270|gb|ACI07046.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Klebsiella pneumoniae 342]
          Length = 397

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 2  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 32


>gi|152972365|ref|YP_001337511.1| oxidoreductase [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|150957214|gb|ABR79244.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 404

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IV+G G AG   AA A +LG    L+
Sbjct: 9  ERFDAIVVGAGAAGMFCAAQAGQLGCRVLLL 39


>gi|149189824|ref|ZP_01868104.1| hypothetical protein VSAK1_12930 [Vibrio shilonii AK1]
 gi|148836310|gb|EDL53267.1| hypothetical protein VSAK1_12930 [Vibrio shilonii AK1]
          Length = 395

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +++  DV+VIG G AG   AA A K G S  +                I G GK +
Sbjct: 1  MSQKVDVVVIGAGAAGLMCAAEAGKRGRSVLV----LDHAKKPGRKILISGGGKCN 52


>gi|114633009|ref|XP_521618.2| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
           theta, 150/170kDa isoform 2 [Pan troglodytes]
          Length = 1352

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|73998665|ref|XP_852131.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
           subunit 10 (theta) isoform 2 [Canis familiaris]
          Length = 1350

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|93004944|ref|YP_579381.1| dihydrolipoamide dehydrogenase [Psychrobacter cryohalolentis K5]
 gi|92392622|gb|ABE73897.1| dihydrolipoamide dehydrogenase [Psychrobacter cryohalolentis K5]
          Length = 483

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYD++VIGGG  G EAA  A +LG S A I
Sbjct: 1  MKDSYDLVVIGGGPGGYEAAIRAGQLGMSVACI 33


>gi|328881099|emb|CCA54338.1| Lysine 2-monooxygenase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +V VIGGG +G  AA    K+G    +       IG         G     L  E+ A+
Sbjct: 51  EVAVIGGGLSGIIAAYELMKMGLKPVVYE--ADQIGGRLRTVGFEGTATEGLTAEMGAM 107


>gi|329121045|ref|ZP_08249676.1| thioredoxin-disulfide reductase [Dialister micraerophilus DSM
          19965]
 gi|327471207|gb|EGF16661.1| thioredoxin-disulfide reductase [Dialister micraerophilus DSM
          19965]
          Length = 97

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + +DV+VIGGG AG  AA  A +   S A+IT   
Sbjct: 2  KIFDVVVIGGGPAGLNAAMYAVRKELSVAIITTDI 36


>gi|325959758|ref|YP_004291224.1| digeranylgeranylglycerophospholipid reductase [Methanobacterium
          sp. AL-21]
 gi|325331190|gb|ADZ10252.1| Digeranylgeranylglycerophospholipid reductase [Methanobacterium
          sp. AL-21]
          Length = 395

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV+VIG G AG   A  AA+ GA   L+  K+       C   +   G
Sbjct: 7  DVLVIGAGPAGSSTAKYAAQNGAKVILMDKKSEIGAPKRCAEGVSKEG 54


>gi|319760825|ref|YP_004124762.1| ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family
           [Alicycliphilus denitrificans BC]
 gi|330822732|ref|YP_004386035.1| Ubiquinone biosynthesis hydroxylase [Alicycliphilus denitrificans
           K601]
 gi|317115386|gb|ADU97874.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Alicycliphilus denitrificans BC]
 gi|329308104|gb|AEB82519.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Alicycliphilus denitrificans K601]
          Length = 422

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDAL 65
           DV+++G G AG   AA  A+ G    ++  + +++ +    P    +   H  V  +  L
Sbjct: 13  DVLIVGAGPAGLSLAASLAQAGMQVTVLEQQPASVLAAP-PPDGREIALTHPSVATLQRL 71

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ 97
                  A   G+  R   V  GP  R    Q
Sbjct: 72  GSWQRLAAHEVGL-LREAQVHDGPVGRRGAMQ 102


>gi|271964288|ref|YP_003338484.1| glycine oxidase ThiO [Streptosporangium roseum DSM 43021]
 gi|270507463|gb|ACZ85741.1| glycine oxidase ThiO [Streptosporangium roseum DSM 43021]
          Length = 372

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DV+VIGGG AG   A   A+ G + A++
Sbjct: 1  MAHRFDVLVIGGGVAGLSVAWRTARRGLTVAVV 33


>gi|289580251|ref|YP_003478717.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Natrialba magadii ATCC 43099]
 gi|289529804|gb|ADD04155.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Natrialba magadii ATCC 43099]
          Length = 192

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++GGG AG  AA   AK G  T + 
Sbjct: 3  DVIIVGGGPAGLSAALFTAKNGLETDVF 30


>gi|149202050|ref|ZP_01879023.1| geranylgeranyl reductase [Roseovarius sp. TM1035]
 gi|149144148|gb|EDM32179.1| geranylgeranyl reductase [Roseovarius sp. TM1035]
          Length = 394

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DV+VIGGG +G  AA   A+ G   AL+
Sbjct: 4  FDVVVIGGGPSGATAAEDLARSGYKVALL 32


>gi|257075619|ref|ZP_05569980.1| glucose-inhibited division protein A [Ferroplasma acidarmanus
          fer1]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          SYD I++GG  AG  AA  AA+ G  T +IT   
Sbjct: 3  SYDTIIVGGASAGLSAAIYAARQGMKTLVITKDI 36


>gi|4503509|ref|NP_003741.1| eukaryotic translation initiation factor 3 subunit A [Homo sapiens]
 gi|6685537|sp|Q14152|EIF3A_HUMAN RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta; AltName: Full=eIF3 p167; AltName:
           Full=eIF3 p180; AltName: Full=eIF3 p185
 gi|1808985|gb|AAB41584.1| p167 [Homo sapiens]
 gi|2501783|gb|AAB80695.1| translation initiation factor 3 large subunit [Homo sapiens]
 gi|55958708|emb|CAI14127.1| eukaryotic translation initiation factor 3, subunit 10 theta,
           150/170kDa [Homo sapiens]
 gi|119569793|gb|EAW49408.1| eukaryotic translation initiation factor 3, subunit 10 theta,
           150/170kDa [Homo sapiens]
 gi|168274396|dbj|BAG09618.1| eukaryotic translation initiation factor 3 subunit 10 [synthetic
           construct]
          Length = 1382

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|333028157|ref|ZP_08456221.1| putative FAD-binding dehydrogenase [Streptomyces sp. Tu6071]
 gi|332748009|gb|EGJ78450.1| putative FAD-binding dehydrogenase [Streptomyces sp. Tu6071]
          Length = 551

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DVIVIGGG AG  A A  A  G    L+  +         + + GG
Sbjct: 6  DVIVIGGGLAGLAATAELADAGRKVILLDQEPEQSLGGQAHWSFGG 51


>gi|329723335|gb|EGG59865.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          VCU144]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|327389296|gb|EGE87641.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae GA04375]
          Length = 566

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 134


>gi|319401159|gb|EFV89374.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          FRI909]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|314933073|ref|ZP_07840439.1| thioredoxin-disulfide reductase [Staphylococcus caprae C87]
 gi|313654392|gb|EFS18148.1| thioredoxin-disulfide reductase [Staphylococcus caprae C87]
          Length = 313

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|312796839|ref|YP_004029761.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          rhizoxinica HKI 454]
 gi|312168614|emb|CBW75617.1| Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
          [Burkholderia rhizoxinica HKI 454]
          Length = 591

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   AK G S A+++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLAKAGLSVAVLS 42


>gi|291388519|ref|XP_002710585.1| PREDICTED: squalene epoxidase [Oryctolagus cuniculus]
          Length = 574

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 17/179 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGSGILGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDALDGLMGRVAD---AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA       V D    + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVHGYIVHDQESKSEVQIPYPLSENSQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              I+G V     E +++  +        D   +     V+  G F +   ++   K+ 
Sbjct: 243 TKFIEGIVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKNLVSNKVS 301


>gi|302518165|ref|ZP_07270507.1| fumarate reductase/succinate dehydrogenase flavoprotein
          [Streptomyces sp. SPB78]
 gi|318060007|ref|ZP_07978730.1| putative FAD-binding dehydrogenase [Streptomyces sp. SA3_actG]
 gi|302427060|gb|EFK98875.1| fumarate reductase/succinate dehydrogenase flavoprotein
          [Streptomyces sp. SPB78]
          Length = 551

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DVIVIGGG AG  A A  A  G    L+  +         + + GG
Sbjct: 6  DVIVIGGGLAGLAATAELADAGRKVILLDQEPEQSLGGQAHWSFGG 51


>gi|242372999|ref|ZP_04818573.1| thioredoxine reductase [Staphylococcus epidermidis M23864:W1]
 gi|242349325|gb|EES40926.1| thioredoxine reductase [Staphylococcus epidermidis M23864:W1]
          Length = 313

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|242242134|ref|ZP_04796579.1| thioredoxine reductase [Staphylococcus epidermidis W23144]
 gi|242234447|gb|EES36759.1| thioredoxine reductase [Staphylococcus epidermidis W23144]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|223042885|ref|ZP_03612933.1| thioredoxin-disulfide reductase [Staphylococcus capitis SK14]
 gi|222443739|gb|EEE49836.1| thioredoxin-disulfide reductase [Staphylococcus capitis SK14]
          Length = 313

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|254415620|ref|ZP_05029379.1| FAD dependent oxidoreductase, putative [Microcoleus
          chthonoplastes PCC 7420]
 gi|196177570|gb|EDX72575.1| FAD dependent oxidoreductase, putative [Microcoleus
          chthonoplastes PCC 7420]
          Length = 407

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          R +DV+V+G G AG + A   AK G    L+   
Sbjct: 2  RKFDVVVVGAGPAGGQCARWLAKSGYQVLLVEQH 35


>gi|154757413|gb|AAI51766.1| EIF6 protein [Bos taurus]
          Length = 828

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|71064763|ref|YP_263490.1| hypothetical protein Psyc_0183 [Psychrobacter arcticus 273-4]
 gi|71037748|gb|AAZ18056.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 438

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +  YDVI+IG G +G   A  A + G    +                + G G+ +
Sbjct: 10 HPHYDVIIIGAGASGLYCALTAGRRGRRVLV----LDHANKAGKKILMSGGGRCN 60


>gi|27467465|ref|NP_764102.1| thioredoxine reductase [Staphylococcus epidermidis ATCC 12228]
 gi|57866408|ref|YP_188025.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          RP62A]
 gi|251810198|ref|ZP_04824671.1| thioredoxine reductase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875655|ref|ZP_06284526.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          SK135]
 gi|293368226|ref|ZP_06614855.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|38605280|sp|Q8CPY8|TRXB_STAES RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|81675191|sp|Q5HQW4|TRXB_STAEQ RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|27315008|gb|AAO04144.1|AE016745_243 thioredoxine reductase [Staphylococcus epidermidis ATCC 12228]
 gi|57637066|gb|AAW53854.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          RP62A]
 gi|251806250|gb|EES58907.1| thioredoxine reductase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295682|gb|EFA88205.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          SK135]
 gi|291317649|gb|EFE58066.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329736692|gb|EGG72957.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          VCU028]
 gi|329737963|gb|EGG74187.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          VCU045]
          Length = 310

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++    T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|331002425|ref|ZP_08325943.1| hypothetical protein HMPREF0491_00805 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410241|gb|EGG89675.1| hypothetical protein HMPREF0491_00805 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 408

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 100/299 (33%), Gaps = 46/299 (15%)

Query: 116 NLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           N+D+     V     E +I   +++  N  I    V++ TG                 + 
Sbjct: 123 NVDIRLNTKVDSLLIENDICKGVIIGKN-KIMADAVIVATGGMSYQATGSDGDGYRFAKE 181

Query: 175 GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTI----IWDKTEKQFADERLIPFSFMT 230
                + L+ S + F+ +  R+K      L    +           +F +     F    
Sbjct: 182 AGLSVSKLYPSLVPFNIEGDRIKALQGLSLKNVNVYIYNDKKLVYDEFGEMLFTHFGVSG 241

Query: 231 DKITNRQIECGITRTNLETHRIIME---NIKHSAIYSGDIKSYGPRYCPSIEDKIVR-FG 286
             I        I   N++ +R+ ++    +    +    ++ +  +   S+++ + + F 
Sbjct: 242 PVII--SASAIIGNKNIKGYRLCIDLKPALDEEKLDERILRDFTEQKNKSLKNSLNKLFP 299

Query: 287 ERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLE---------KVNIIRP 337
            +   ++    +         N     L +E + + +     LE            II  
Sbjct: 300 AKLIDEVIY--QSKIDPEKKVN----LLTKEERQRLVHATKNLEYVISSTRGFNEAIITK 353

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTGYEEAAAQG 382
           G  +E   INPK    T+E+KKI GLF AG              QI  +TGY      G
Sbjct: 354 G-GVEVSQINPK----TMESKKIKGLFFAGEVLDLDAFTGGYNLQIAWSTGYAAGEGAG 407


>gi|325696467|gb|EGD38357.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK160]
          Length = 461

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREID 63
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH +  ++
Sbjct: 19  YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 78

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                 G  +    I F  L  +K   V   ++        L           ++ IQG+
Sbjct: 79  GARRY-GIESKLERIDFEKLVDRKNQVVASLQSGIHASFKSL----------GIEYIQGQ 127

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
                     +      +   I    V+L TG++
Sbjct: 128 AKFVKDRTFTV------NGKEISGKDVILATGSY 155


>gi|325289256|ref|YP_004265437.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Syntrophobotulus glycolicus DSM 8271]
 gi|324964657|gb|ADY55436.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Syntrophobotulus glycolicus DSM 8271]
          Length = 366

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 18/98 (18%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------LITHKTSTIGSMSCNPAI 50
          ++ SYD +V+G G AG  AA   A LGA              L        GS S    I
Sbjct: 1  MSDSYDALVVGAGPAGLSAAIEMAGLGARVLVVDEHSRPGGQLFKQIHQFFGSHSHKAGI 60

Query: 51 GGLGKG-HLVREIDALD------GLMGRVADAAGIQFR 81
           G   G  L+ E   L        ++  + D      R
Sbjct: 61 RGFAIGEELLSEATRLGVEVWLNSVVWGIFDKTAAILR 98


>gi|297687475|ref|XP_002821238.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 2 [Pongo abelii]
          Length = 1382

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|297687473|ref|XP_002821237.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 1 [Pongo abelii]
          Length = 1392

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|297825163|ref|XP_002880464.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326303|gb|EFH56723.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G +G   A    K G    +I         I      P     +  LG    V
Sbjct: 98  DVIIVGAGVSGAALAHTLGKEGRRVHVIERDLSEQDRIVGELLQPGGYLKLIELGLEDCV 157

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           ++IDA   ++G V    G   ++    +               +   M+ +  +  N+ +
Sbjct: 158 KKIDAQ-RVLGYVLFKDGKHTKLSYPLETFDSDVAGRSFHNGRFVQRMREKAATLSNVRL 216

Query: 120 IQGEVAGFNTEKNIISSI--VMQDNSMIRC 147
            QG V     E   I  +    ++ + +R 
Sbjct: 217 EQGTVTSLLEENGTIKGVRYRTKEGNELRS 246


>gi|257219500|gb|ACV50407.1| FixC nitrogen fixation protein [Rhizobium leguminosarum bv. viciae]
          Length = 435

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 29/174 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-----------------LITHKTSTIGS 43
           M    +D IVIG G +G  AA   A  G                     L  +    I  
Sbjct: 1   MTKGKFDPIVIGAGMSGNAAAYSMASRGLKVLQLERGEHSGSKNVQGAILYANMLEAI-- 58

Query: 44  MSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
               P         L R +      +   +   G+ +R  +  +   ++  R    R  +
Sbjct: 59  ---IPNFRDDA--PLERHLVEQRFWLMDDSSHTGVHYRSDDFNE---LKPNRYTIIRAQF 110

Query: 104 RLAMQREILSQENLDVIQGEVAGFNTE-KNIISSIVM-QDNSMIRCSTVVLTTG 155
                 ++       + +          +  +  +   ++  +I    VVL  G
Sbjct: 111 DKWFSSKVRDAGGTILCETTATKLARNLRGKVVGVHTDREGGVILADVVVLAEG 164


>gi|261406452|ref|YP_003242693.1| putative FAD-binding dehydrogenase [Paenibacillus sp. Y412MC10]
 gi|261282915|gb|ACX64886.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Paenibacillus sp. Y412MC10]
          Length = 549

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YDVIV+G G +G  A A  A+ G    L+  +  +        +IGG  
Sbjct: 2  KYDVIVVGAGLSGLVATAEMAEAGKRVLLLDQEPES--------SIGGQA 43


>gi|256783461|ref|ZP_05521892.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 523

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 8  SRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 39


>gi|237736754|ref|ZP_04567235.1| thioredoxin reductase [Fusobacterium mortiferum ATCC 9817]
 gi|229420616|gb|EEO35663.1| thioredoxin reductase [Fusobacterium mortiferum ATCC 9817]
          Length = 304

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVR 60
          + + YDVI++GGG AG  A     +   ST +I      ++          G  +G    
Sbjct: 1  MEKIYDVIIVGGGPAGLTAGLYTGRAKLSTLVIEKAGMGSLYMAHKIDNYPGFPEGLTGT 60

Query: 61 EIDALDGLMGRVADAAGIQF 80
          E++    LM   A   G +F
Sbjct: 61 ELN---NLMKEQAKKFGAEF 77


>gi|227540418|ref|ZP_03970467.1| flavoprotein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239742|gb|EEI89757.1| flavoprotein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 396

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            G +K  ++R G       ++  EL P TLE+K+I GL+  G+    TG+
Sbjct: 334 KGYDKAEVMRGG-------VDTNELNPSTLESKRIPGLYFGGEAVDVTGW 376


>gi|225569592|ref|ZP_03778617.1| hypothetical protein CLOHYLEM_05686 [Clostridium hylemonae DSM
          15053]
 gi|225161800|gb|EEG74419.1| hypothetical protein CLOHYLEM_05686 [Clostridium hylemonae DSM
          15053]
          Length = 463

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +D+IV+GGG  G  AA  AAK G S  L 
Sbjct: 6  VKEEFDLIVVGGGPGGYSAAITAAKKGLSVVLF 38


>gi|194380132|dbj|BAG63833.1| unnamed protein product [Homo sapiens]
          Length = 1348

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 543 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 602

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 603 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 655

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 656 NQEKKIDYFERAKRLEEIPL 675


>gi|148549842|ref|YP_001269944.1| hypothetical protein Pput_4640 [Pseudomonas putida F1]
 gi|148513900|gb|ABQ80760.1| HI0933 family protein [Pseudomonas putida F1]
          Length = 412

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
          +VIGGG AG  AA   AK G +  +       + S+     + G+G  ++    +     
Sbjct: 13 VVIGGGPAGLMAAEALAKAGLAVEVF----DAMPSVGRKFLLAGVGGMNITHS-EPYPAF 67

Query: 69 MGRVADAAGIQFRVLNVKKGPAVR 92
          + R A+  G    +L      A+R
Sbjct: 68 VARYAERQGEIEALLRDFDADALR 91


>gi|94497879|ref|ZP_01304444.1| FAD dependent oxidoreductase [Sphingomonas sp. SKA58]
 gi|94422607|gb|EAT07643.1| FAD dependent oxidoreductase [Sphingomonas sp. SKA58]
          Length = 534

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD ++IGGGH G   A   A+ G    ++
Sbjct: 1  MGKRYDAVIIGGGHNGLVCAFYLARAGYKVRIL 33


>gi|24372766|ref|NP_716808.1| oxidoreductase, FAD-binding [Shewanella oneidensis MR-1]
 gi|24346844|gb|AAN54253.1|AE015562_3 oxidoreductase, FAD-binding [Shewanella oneidensis MR-1]
          Length = 404

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 21/170 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG--------GLG 54
            +S+DVI++GGG  G   A   A+ G   A+      +    + +P            + 
Sbjct: 14  TQSFDVILVGGGMVGAATAIGLAQQGLHIAV----IESFAPEAYSPEQALDVRVSAISVA 69

Query: 55  KGHLVREIDALDGL--------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA 106
             HL+ ++ ALD L        +G             +  +  A        +  L +LA
Sbjct: 70  SEHLLEQLGALDSLLKMRNVPYLGLETWELDGCITQFHSSQIGASHLGHI-VENRLVQLA 128

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +  ++   EN+ +   E            S+ +Q   ++    +V   G 
Sbjct: 129 LWEQMQQWENIRLFCPERVAHFARGVDTVSVHLQSGCLLEAKLLVGADGA 178


>gi|26991446|ref|NP_746871.1| hypothetical protein PP_4765 [Pseudomonas putida KT2440]
 gi|24986521|gb|AAN70335.1|AE016675_5 conserved hypothetical protein TIGR00275 [Pseudomonas putida
          KT2440]
          Length = 412

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
          +VIGGG AG  AA   AK G +  +       + S+     + G+G  ++    +     
Sbjct: 13 VVIGGGPAGLMAAEALAKAGLAVEVF----DAMPSVGRKFLLAGVGGMNITHS-EPYPAF 67

Query: 69 MGRVADAAGIQFRVLNVKKGPAVR 92
          + R A+  G    +L      A+R
Sbjct: 68 VARYAERQGEIEALLRDFDADALR 91


>gi|51246098|ref|YP_065982.1| opine/octopine dehydrogenase, subunit A [Desulfotalea
          psychrophila LSv54]
 gi|50877135|emb|CAG36975.1| related to opine/octopine dehydrogenase, subunit A [Desulfotalea
          psychrophila LSv54]
          Length = 464

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +DV ++G G AG   A  AAKLG    L+
Sbjct: 5  QQKWDVAIVGAGPAGLSCAITAAKLGLDVILL 36


>gi|40788877|dbj|BAA09488.2| KIAA0139 [Homo sapiens]
          Length = 1388

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 583 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 642

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 643 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 695

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 696 NQEKKIDYFERAKRLEEIPL 715


>gi|33861317|ref|NP_892878.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33633894|emb|CAE19219.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 443

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D    
Sbjct: 4  VAVIGGGPSGSCAAEILAKSGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFD---- 53

Query: 68 LMGRVADAAGIQFRVLNVK 86
          L   + D      ++++  
Sbjct: 54 LPETIIDRKVRHMKMISPS 72


>gi|85711543|ref|ZP_01042601.1| Predicted flavoprotein [Idiomarina baltica OS145]
 gi|85694695|gb|EAQ32635.1| Predicted flavoprotein [Idiomarina baltica OS145]
          Length = 398

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +DV++IG G AG   AA AA+ G    ++               I G G+ +
Sbjct: 4  FDVVIIGAGAAGLHCAAHAARNGHKVIVV----DHAKQAGKKILISGGGRCN 51


>gi|83952586|ref|ZP_00961317.1| N-methylproline demethylase, putative [Roseovarius nubinhibens ISM]
 gi|83836259|gb|EAP75557.1| N-methylproline demethylase, putative [Roseovarius nubinhibens ISM]
          Length = 681

 Score = 42.2 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           ++V+G G AG EAA VAA+ G    +   +  
Sbjct: 389 IVVVGAGPAGLEAARVAAERGHDVTVFEAQPD 420


>gi|297687479|ref|XP_002821240.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 4 [Pongo abelii]
          Length = 1348

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 543 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 602

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 603 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 655

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 656 NQEKKIDYFERAKRLEEIPL 675


>gi|297687477|ref|XP_002821239.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like isoform 3 [Pongo abelii]
          Length = 1352

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|291166418|gb|EFE28464.1| pyridine nucleotide-disulfide oxidoreductase [Filifactor alocis
           ATCC 35896]
          Length = 412

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 17/167 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR- 60
           + +   V+VIGGG +G  AA  A + GA   L+         +       G G+ +L   
Sbjct: 1   MKKQKHVVVIGGGASGIVAAISAKRNGADVTLLERN----SRVGKKILATGNGRCNLTNI 56

Query: 61  --EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA----------DRELYRLAMQ 108
             +I+  +G   +   +   QF +          G   +           D+    L + 
Sbjct: 57  NSDINFYNGQNPKFIYSTFGQFGIQETLSFFEKLGIEYKVEANGKVFPMSDQSSSVLDVL 116

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              L+   + +I         +      +   DN    C +VV  TG
Sbjct: 117 LYELNHLGVTIITDCYVTELKKNKRTFLVKSSDNKTFLCDSVVFATG 163


>gi|281338077|gb|EFB13661.1| hypothetical protein PANDA_003432 [Ailuropoda melanoleuca]
          Length = 1337

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 562 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 621

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 622 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 674

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 675 NQEKKIDYFERAKRLEEIPL 694


>gi|253575111|ref|ZP_04852450.1| monomeric sarcosine oxidase [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251845567|gb|EES73576.1| monomeric sarcosine oxidase [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 384

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIV+G G  G  A    A+ G  T LI
Sbjct: 7  YDVIVVGAGSMGMSAGYYLARKGLRTLLI 35


>gi|254481373|ref|ZP_05094618.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038536|gb|EEB79198.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 520

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+++G GH G   A   AK G    ++
Sbjct: 3  DYDVLMVGAGHNGLVCAHALAKSGRKVLML 32


>gi|194205615|ref|XP_001496512.2| PREDICTED: similar to LOC506564 protein [Equus caballus]
          Length = 1418

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 646 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 705

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 706 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 758

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 759 NQEKKIDYFERAKRLEEIPL 778


>gi|159037684|ref|YP_001536937.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Salinispora arenicola CNS-205]
 gi|157916519|gb|ABV97946.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Salinispora arenicola CNS-205]
          Length = 306

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIV+GGG AG  AA V+ +      ++
Sbjct: 2  YDVIVVGGGPAGLNAALVSGRQRRRVLVV 30


>gi|186471381|ref|YP_001862699.1| FAD dependent oxidoreductase [Burkholderia phymatum STM815]
 gi|184197690|gb|ACC75653.1| FAD dependent oxidoreductase [Burkholderia phymatum STM815]
          Length = 383

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           Y V++ GGG  G  AA + A+ G   AL 
Sbjct: 6  HYQVVIAGGGLVGSSAALMLARRGVRVALF 35


>gi|116515652|ref|YP_816499.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae D39]
 gi|225861101|ref|YP_002742610.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae Taiwan19F-14]
 gi|116076228|gb|ABJ53948.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae D39]
 gi|225727740|gb|ACO23591.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae Taiwan19F-14]
          Length = 561

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 134


>gi|95102034|dbj|BAE94261.1| ZH12 [Rattus norvegicus]
          Length = 1244

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 467 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 526

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 527 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 579

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 580 NQEKKIDYFERAKRLEEIPL 599


>gi|84040123|gb|AAT44862.2| monomeric sarcosine oxidase [Bacillus sp. BSD-8]
          Length = 387

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DVIV+G G  G  A    AK G  T L+     +      N +  G 
Sbjct: 1  MSTHFDVIVVGAGSMGMAAGYYLAKQGVKTLLV----DSFDPPHTNGSHHGD 48


>gi|73998667|ref|XP_544044.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
           subunit 10 (theta) isoform 1 [Canis familiaris]
          Length = 1291

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|134208|sp|P23342|MSOX_BACSN RecName: Full=Monomeric sarcosine oxidase; Short=MSOX
 gi|216327|dbj|BAA01410.1| sarcosine oxidase [Bacillus sp.]
          Length = 387

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DVIV+G G  G  A    AK G  T L+     +      N +  G 
Sbjct: 1  MSTHFDVIVVGAGSMGMAAGYYLAKQGVKTLLV----DSFDPPHTNGSHHGD 48


>gi|329961793|ref|ZP_08299807.1| hypothetical protein HMPREF9446_01377 [Bacteroides fluxus YIT
           12057]
 gi|328531233|gb|EGF58077.1| hypothetical protein HMPREF9446_01377 [Bacteroides fluxus YIT
           12057]
          Length = 377

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + IG         N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQIGRQQTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LN+  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNIFCQHGASTSILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     EK+ +  I       +    V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFETRMDALIIEKDEVKGIETNTGKTLLGP-VILATGHSARDVY 254


>gi|326918088|ref|XP_003205323.1| PREDICTED: squalene monooxygenase-like [Meleagris gallopavo]
          Length = 572

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           +VI++G G  G   A V A+ G    +I         I      P    A+  LG    V
Sbjct: 123 EVIIVGSGVLGSSLATVLARDGRKVTVIERDLKEPDRIVGELLQPGGFNALKDLGLEDTV 182

Query: 60  REIDAL--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             IDA   +G +    ++           +G  V   R+      + + ++R  +++ N 
Sbjct: 183 EGIDAQTVNGYIIHDLESKSEVEIPFPTSEGGGVVSGRS-FHHGQFIMGLRRAAMAEPNA 241

Query: 118 DVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
             I+G V     + + I  +        D   +     V+  G F +  
Sbjct: 242 KFIEGTVTQLLEDDDCIVGVQYKDKETGDTKELHAPLTVVADGLFSKFR 290


>gi|301759199|ref|XP_002915445.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           A-like [Ailuropoda melanoleuca]
          Length = 1352

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|302763687|ref|XP_002965265.1| hypothetical protein SELMODRAFT_439136 [Selaginella
          moellendorffii]
 gi|300167498|gb|EFJ34103.1| hypothetical protein SELMODRAFT_439136 [Selaginella
          moellendorffii]
          Length = 542

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          S+DVI++G G AG  AA   ++ G    +I   T  IG         G 
Sbjct: 46 SFDVIIVGAGMAGIMAANTLSEAGIDDFVILEATDRIGGRMREADFAGK 94


>gi|302809801|ref|XP_002986593.1| hypothetical protein SELMODRAFT_446650 [Selaginella
          moellendorffii]
 gi|300145776|gb|EFJ12450.1| hypothetical protein SELMODRAFT_446650 [Selaginella
          moellendorffii]
          Length = 542

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          S+DVI++G G AG  AA   ++ G    +I   T  IG         G 
Sbjct: 46 SFDVIIVGAGMAGIMAANTLSEAGIDDFVILEATDRIGGRMREADFAGK 94


>gi|311744352|ref|ZP_07718154.1| mercury(II) reductase [Aeromicrobium marinum DSM 15272]
 gi|311312318|gb|EFQ82233.1| mercury(II) reductase [Aeromicrobium marinum DSM 15272]
          Length = 465

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D++V+GGG AG  AA  AA+ GA   L+
Sbjct: 20 WDLVVVGGGTAGIVAAKTAARFGADVLLV 48


>gi|317131357|ref|YP_004090671.1| thioredoxin reductase [Ethanoligenens harbinense YUAN-3]
 gi|315469336|gb|ADU25940.1| thioredoxin reductase [Ethanoligenens harbinense YUAN-3]
          Length = 300

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++GGG AG  AA  AA+ G ST ++
Sbjct: 3  DVLIVGGGPAGITAAVYAARAGLSTMIL 30


>gi|254504015|ref|ZP_05116166.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
          DFL-11]
 gi|222440086|gb|EEE46765.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
          DFL-11]
          Length = 440

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          M N  +DV VIG G AG  AA   A  G S  ++  +    G+   N   
Sbjct: 30 MGNALFDVAVIGAGFAGLSAAMKLAAAGVSVCVLEAEHVGYGASGRNGGF 79


>gi|254525872|ref|ZP_05137924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Prochlorococcus marinus str. MIT 9202]
 gi|221537296|gb|EEE39749.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Prochlorococcus marinus str. MIT 9202]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   ++    T +          +  NP++G L   H
Sbjct: 7  DVVIIGGGPAGCTCALYTSRSNLKTVI----------LDKNPSVGALAITH 47


>gi|218674650|ref|ZP_03524319.1| D-octopine oxidase, subunit B protein [Rhizobium etli GR56]
          Length = 375

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIGGG  G   A   ++ G   A++
Sbjct: 2  DYDVIVIGGGLVGVSIAWGLSRCGQRVAIV 31


>gi|183980809|ref|YP_001849100.1| dihydrolipoamide dehydrogenase Lpd [Mycobacterium marinum M]
 gi|183174135|gb|ACC39245.1| dihydrolipoamide dehydrogenase Lpd [Mycobacterium marinum M]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG +TA++  K        +G +     +      H+ 
Sbjct: 6  HYDVVVLGAGPGGYVAAIRAAQLGLNTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHIF 65

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G      G+ F
Sbjct: 66 TKDAKAFGISGEATFDYGVAF 86


>gi|167464842|ref|ZP_02329931.1| hypothetical protein Plarl_20162 [Paenibacillus larvae subsp.
          larvae BRL-230010]
 gi|322382953|ref|ZP_08056785.1| hypothetical protein PL1_0659 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321153073|gb|EFX45531.1| hypothetical protein PL1_0659 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 649

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I  +YDVIV+G    G  AA  AA+ G  T L+
Sbjct: 60 IQDNYDVIVVGTDPEGVSAAISAARNGQKTLLV 92


>gi|163745377|ref|ZP_02152737.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161382195|gb|EDQ06604.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 401

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGH--LVREI 62
           V+++GGG+ G EAAAVAAKLG    L+         + +   +     L + H   +RE 
Sbjct: 146 VLIVGGGYIGLEAAAVAAKLGLEVTLVEMADRILQRVAAPETSDYFRALHESHGVSLREG 205

Query: 63  DALDGLMG 70
             LD L+G
Sbjct: 206 VGLDRLLG 213


>gi|158422623|ref|YP_001523915.1| hypothetical protein AZC_0999 [Azorhizobium caulinodans ORS 571]
 gi|158329512|dbj|BAF86997.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 405

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +R   V VIG G AG  AA+  A+ G S  L       + S +    + G G  +L  
Sbjct: 1  MQSRVSKVAVIGAGPAGLMAASCLAQAGVSVELF----DRMPSPARKFLMAGRGGLNLTH 56

Query: 61 E------IDALDGLMGRVA 73
                 +       GR+A
Sbjct: 57 SEPLERFLARYGSAAGRLA 75


>gi|157412569|ref|YP_001483435.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Prochlorococcus marinus str. MIT 9215]
 gi|157387144|gb|ABV49849.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9215]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   ++    T +          +  NP++G L   H
Sbjct: 7  DVVIIGGGPAGCTCALYTSRSNLKTVI----------LDKNPSVGALAITH 47


>gi|153799389|gb|ABS50460.1| NapH2 [Streptomyces aculeolatus]
          Length = 446

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  +DVIVIGGG AG   AA+ +K G    ++
Sbjct: 29 FSGDFDVIVIGGGPAGATTAALLSKRGRRVLVL 61


>gi|153799418|gb|ABS50488.1| NapH2 [Streptomyces sp. CNQ525]
          Length = 425

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  +DVIVIGGG AG   AA+ +K G    ++
Sbjct: 8  FSGDFDVIVIGGGPAGATTAALLSKRGRRVLVL 40


>gi|123967766|ref|YP_001008624.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. AS9601]
 gi|123197876|gb|ABM69517.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. AS9601]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   ++    T +          +  NP++G L   H
Sbjct: 7  DVVIIGGGPAGCTCALYTSRSNLKTVI----------LDKNPSVGALAITH 47


>gi|83646636|ref|YP_435071.1| glutathione-disulfide reductase [Hahella chejuensis KCTC 2396]
 gi|83634679|gb|ABC30646.1| glutathione-disulfide reductase [Hahella chejuensis KCTC 2396]
          Length = 448

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD++VIG G  G  AA VAA+LGA  A+I
Sbjct: 2  YDLVVIGAGSGGVRAARVAAQLGAKVAII 30


>gi|78778599|ref|YP_396711.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9312]
 gi|78712098|gb|ABB49275.1| Thioredoxin-disulfide reductase [Prochlorococcus marinus str. MIT
          9312]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   ++    T +          +  NP++G L   H
Sbjct: 7  DVVIIGGGPAGCTCALYTSRSNLKTVI----------LDKNPSVGALAITH 47


>gi|74216853|dbj|BAE26550.1| unnamed protein product [Mus musculus]
          Length = 807

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|50510383|dbj|BAD32177.1| mKIAA0139 protein [Mus musculus]
          Length = 857

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 583 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 642

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 643 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 695

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 696 NQEKKIDYFERAKRLEEIPL 715


>gi|93005033|ref|YP_579470.1| HI0933-like protein [Psychrobacter cryohalolentis K5]
 gi|92392711|gb|ABE73986.1| HI0933-like protein [Psychrobacter cryohalolentis K5]
          Length = 433

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           YDVI+IG G +G   A  A + G    +                + G G+ +
Sbjct: 12 HYDVIIIGAGASGLYCALTAGRRGRRVLV----LDHANKAGKKILMSGGGRCN 60


>gi|328945255|gb|EGG39408.1| NAD(FAD)-utilizing dehydrogenase [Streptococcus sanguinis SK1087]
          Length = 391

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
            +D I+IGGG AG  AA  ++  G  T L+   
Sbjct: 2  NHFDTIIIGGGPAGMMAAISSSFHGQKTLLLEKN 35


>gi|329956345|ref|ZP_08296942.1| alkyl hydroperoxide reductase, F subunit [Bacteroides clarus YIT
           12056]
 gi|328524242|gb|EGF51312.1| alkyl hydroperoxide reductase, F subunit [Bacteroides clarus YIT
           12056]
          Length = 519

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +D +V+GGG AG  AA  +A+ G   A+I 
Sbjct: 213 REFDTLVLGGGPAGVSAAIYSARKGLRVAIIA 244


>gi|325847283|ref|ZP_08170001.1| alkyl hydroperoxide reductase, F subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480914|gb|EGC83963.1| alkyl hydroperoxide reductase, F subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 508

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 44/167 (26%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD++++G G +   +A   A+ G   A++                            D
Sbjct: 205 KNYDILIVGAGPSSATSAIYGARKGLKVAIVA---------------------------D 237

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G +    D       + N+   P   GP+       Y L++++++ +   +D+I+G 
Sbjct: 238 EFGGQVNETLD-------IENITGIPKTEGPK-------YMLSVKKQVENL-GVDIIEG- 281

Query: 124 VAGFNTEKNIIS-SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           V   + EKN    +++++D + I   T++L TGT  R +   G+ K 
Sbjct: 282 VRAVDFEKNDHEFNLILEDGAKINSKTIILATGTRWRLLGIDGEEKF 328


>gi|309809021|ref|ZP_07702895.1| flavocytochrome c [Lactobacillus iners SPIN 2503V10-D]
 gi|312873472|ref|ZP_07733522.1| flavocytochrome c [Lactobacillus iners LEAF 2052A-d]
 gi|312875359|ref|ZP_07735367.1| flavocytochrome c [Lactobacillus iners LEAF 2053A-b]
 gi|329920776|ref|ZP_08277363.1| flavocytochrome c [Lactobacillus iners SPIN 1401G]
 gi|308170677|gb|EFO72696.1| flavocytochrome c [Lactobacillus iners SPIN 2503V10-D]
 gi|311089193|gb|EFQ47629.1| flavocytochrome c [Lactobacillus iners LEAF 2053A-b]
 gi|311090981|gb|EFQ49375.1| flavocytochrome c [Lactobacillus iners LEAF 2052A-d]
 gi|328935556|gb|EGG32023.1| flavocytochrome c [Lactobacillus iners SPIN 1401G]
          Length = 459

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V          + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHINVFNNAKVVELIHNDKDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|294338617|emb|CAZ86946.1| putative FAD dependent oxidoreductase [Thiomonas sp. 3As]
          Length = 437

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++GGG AG  AA    K G    L+  +    G+   N   GG        E++  +
Sbjct: 37  DVCIVGGGLAGLSAALELRKRGMQVVLLEGRHIGWGASGRN---GGQALAGYASEMEPFE 93

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
             +G  +     +   L+  +    R  +   D
Sbjct: 94  RQLGAKSAHFAWEMS-LDAIRLLRERIAQYAID 125


>gi|291404897|ref|XP_002718731.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 10
           theta, 150/170kDa [Oryctolagus cuniculus]
          Length = 1362

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 690 NQEKKIDYFERAKRLEEIPL 709


>gi|317127985|ref|YP_004094267.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Bacillus cellulosilyticus DSM 2522]
 gi|315472933|gb|ADU29536.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Bacillus cellulosilyticus DSM 2522]
          Length = 424

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + +DV+++GGG AG  AA    + G S  L+
Sbjct: 1  MIKKWDVVIVGGGLAGYVAANYLGRKGVSVLLL 33


>gi|289582429|ref|YP_003480895.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
 gi|289531982|gb|ADD06333.1| geranylgeranyl reductase [Natrialba magadii ATCC 43099]
          Length = 471

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGG 52
          DV+V+G G +GC AAA  A+ G    ++  KT    G ++C  A+ G
Sbjct: 21 DVVVVGAGTSGCYAAATIAQAGYEVVVLERKTEEEAGHIACGDALKG 67


>gi|172079517|ref|ZP_02708175.2| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC1873-00]
 gi|172043494|gb|EDT51540.1| dihydrolipoyl dehydrogenase [Streptococcus pneumoniae CDC1873-00]
          Length = 561

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 103 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 134


>gi|270307907|ref|YP_003329965.1| thioredoxin reductase [Dehalococcoides sp. VS]
 gi|270153799|gb|ACZ61637.1| thioredoxin reductase [Dehalococcoides sp. VS]
          Length = 306

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI+IGGG AG  AA    +    T +I
Sbjct: 1  MSTPLYDVIIIGGGPAGLTAALYTGRAKLKTLVI 34


>gi|149634646|ref|XP_001514639.1| PREDICTED: similar to p167 [Ornithorhynchus anatinus]
          Length = 1362

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 599 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 658

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 659 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 711

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 712 NQEKKIDYFERAKRLEEIPL 731


>gi|119476708|ref|ZP_01617018.1| dihydrolipoamide dehydrogenase [marine gamma proteobacterium
          HTCC2143]
 gi|119449964|gb|EAW31200.1| dihydrolipoamide dehydrogenase [marine gamma proteobacterium
          HTCC2143]
          Length = 479

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---------MSCNPAIGGLGK 55
           +DV+VIG G AG  AA  A +LG + A +  +T+ +G          + C P+   L  
Sbjct: 3  KFDVVVIGSGPAGYVAAIRATQLGLTVACLEKETNKMGKPNYGGTCLNVGCIPSKALLDS 62

Query: 56 GHLVREIDALDGLMGRVADA 75
           H   E     GL G  A  
Sbjct: 63 SHKYVEAIENFGLHGITAKE 82


>gi|332968267|gb|EGK07342.1| alkyl hydroperoxide reductase [Psychrobacter sp. 1501(2011)]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
              DV VIGGG AG  +A  +A+ G    LI      IG
Sbjct: 220 ERQDVTVIGGGPAGVASAIYSARKGLKVTLIA---DRIG 255


>gi|329121400|ref|ZP_08250025.1| thioredoxin-disulfide reductase [Dialister micraerophilus DSM
          19965]
 gi|327469690|gb|EGF15157.1| thioredoxin-disulfide reductase [Dialister micraerophilus DSM
          19965]
          Length = 539

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YD I++GGG AG  AA   A+      ++     TIG      +      G +  +
Sbjct: 1  MEKLYDAIIVGGGPAGLSAAIYMARAQFKVLVVE--KETIGGQITITSDIVNYPGVVKTD 58

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
             L   M   A+  G +F +  V K
Sbjct: 59 GSTLTKQMKVQAENFGAEFLISKVNK 84


>gi|319935413|ref|ZP_08009850.1| hypothetical protein HMPREF9488_00681 [Coprobacillus sp. 29_1]
 gi|319809629|gb|EFW06042.1| hypothetical protein HMPREF9488_00681 [Coprobacillus sp. 29_1]
          Length = 640

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI-GSMSCN 47
           V VIGGG AGC+AA  A + G    L   KT  + G +SC+
Sbjct: 382 VYVIGGGPAGCKAALTAYERGHQVILFE-KTDVLGGQLSCS 421


>gi|319947563|ref|ZP_08021793.1| thioredoxin reductase [Streptococcus australis ATCC 700641]
 gi|319746251|gb|EFV98514.1| thioredoxin reductase [Streptococcus australis ATCC 700641]
          Length = 304

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD ++IG G AG  AA  AA+     AL+
Sbjct: 2  YDTLIIGAGPAGMTAALYAARSNLKVALL 30


>gi|319409448|emb|CBI83097.1| dihydrolipoamide dehydrogenase [Bartonella schoenbuchensis R1]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+VIG G  G  AA  AA+LG   A++
Sbjct: 2  SYDVVVIGAGPGGYVAAIKAAQLGLKVAIV 31


>gi|289767340|ref|ZP_06526718.1| oxidoreductase [Streptomyces lividans TK24]
 gi|289697539|gb|EFD64968.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 540

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 25 SRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 56


>gi|223635248|sp|Q4P0N0|KMO_USTMA RecName: Full=Kynurenine 3-monooxygenase; AltName:
          Full=Biosynthesis of nicotinic acid protein 4; AltName:
          Full=Kynurenine 3-hydroxylase
          Length = 600

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          V VIG G  GC AA   A+ G    +   +  
Sbjct: 25 VAVIGAGPVGCLAALAFAQRGCKVDIFESRPD 56


>gi|221369535|ref|YP_002520631.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides KD131]
 gi|221162587|gb|ACM03558.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides KD131]
          Length = 531

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YD IV+GGGH G    A  A+ G    ++
Sbjct: 1  MSPQYDAIVVGGGHNGLTCGAYLARAGVKVLVV 33


>gi|212716481|ref|ZP_03324609.1| hypothetical protein BIFCAT_01407 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212660562|gb|EEB21137.1| hypothetical protein BIFCAT_01407 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 588

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIV+GGG AG  A    A+      ++
Sbjct: 7  YDVIVVGGGPAGLTAGLYLARARYRVLIL 35


>gi|149003352|ref|ZP_01828241.1| hypothetical protein CGSSp14BS69_05087 [Streptococcus pneumoniae
          SP14-BS69]
 gi|147758535|gb|EDK65533.1| hypothetical protein CGSSp14BS69_05087 [Streptococcus pneumoniae
          SP14-BS69]
          Length = 57

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + +D IVIGGG AG  A   ++  G  T LI   
Sbjct: 8  KHFDTIVIGGGPAGMMATISSSFYGQKTLLIEKN 41


>gi|118431658|ref|NP_148281.2| hypothetical protein APE_1952.1 [Aeropyrum pernix K1]
 gi|116062981|dbj|BAA80961.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 463

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 13/162 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+++G G AG   A +    G   A +    +    +   P    +GKGH +     
Sbjct: 6   KYDVVIVGLGPAGSSLAYLLKDTGLKVAGL--DIADFNRVWGKPCGDAIGKGHFLETGLP 63

Query: 65  L--DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQ 121
           L     M +V +A  I      VK   +        DR  Y L +  E      +DV ++
Sbjct: 64  LPKGEAMMQVVNAVDIYSPSEEVKIRLSEPEGGFMIDRNKYGLQLLEEAQK-SGVDVYLK 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSM-------IRCSTVVLTTGT 156
                   E   +  +  + +              +V  TG+
Sbjct: 123 THALSPIIENGRLVGVYAKRHGEDGDVNVKFYSKIIVDATGS 164


>gi|114704549|ref|ZP_01437457.1| dihydrolipoamide dehydrogenase [Fulvimarina pelagi HTCC2506]
 gi|114539334|gb|EAU42454.1| dihydrolipoamide dehydrogenase [Fulvimarina pelagi HTCC2506]
          Length = 484

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDV+VIGGG  G  AA  AA+LG  TA++
Sbjct: 1  MADTYDVLVIGGGPGGYVAAIRAAQLGFKTAVV 33


>gi|90423993|ref|YP_532363.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris
          BisB18]
 gi|90106007|gb|ABD88044.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris
          BisB18]
          Length = 472

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MSDTSFDVIIIGSGPGGYVAAIRAAQLGLKTAIV 34


>gi|71024501|ref|XP_762480.1| hypothetical protein UM06333.1 [Ustilago maydis 521]
 gi|46097729|gb|EAK82962.1| hypothetical protein UM06333.1 [Ustilago maydis 521]
          Length = 1755

 Score = 42.2 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 8    VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
            V VIG G  GC AA   A+ G    +   +  
Sbjct: 1180 VAVIGAGPVGCLAALAFAQRGCKVDIFESRPD 1211


>gi|313228899|emb|CBY18051.1| unnamed protein product [Oikopleura dioica]
          Length = 683

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 45/192 (23%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           S  E   ++  ++   RL  +  +L    E  Q            LRS L+S        
Sbjct: 155 SVGEESSNMDEEDLRQRLFELEKELALSAEENQA-----------LRSDLES-------- 195

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDF-SIQNLFSICPDARKFSSLVIE---RLQIESSYAA 544
           + + IS  Q+GK+    + +      + + L  +  +         E   RL++    + 
Sbjct: 196 AKSFISDGQNGKSNGEIDLIERRAVETQRRLDEVQEELMMMEHQREEESIRLEVALRESE 255

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDY------------SSLPAL------SNELKEKLSI 586
              RQ  E  E K +E  ++  + DY            +SL +L      SNEL++KL  
Sbjct: 256 EW-RQRTEIAEQKADEVAVLKDEVDYLREKADKSTRLQASLDSLRQKAEESNELRKKLRD 314

Query: 587 LKPFNL-LQASK 597
               +L  QAS+
Sbjct: 315 A--EDLAAQASR 324


>gi|300869038|ref|ZP_07113640.1| succinate dehydrogenase flavoprotein subunit [Oscillatoria sp.
          PCC 6506]
 gi|300332949|emb|CBN58834.1| succinate dehydrogenase flavoprotein subunit [Oscillatoria sp.
          PCC 6506]
          Length = 575

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAK 26
           +DVI++GGG AGC AA   A+
Sbjct: 3  EHDVIIVGGGLAGCRAAVEIAR 24


>gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Herbaspirillum
           seropedicae SmR1]
 gi|300072821|gb|ADJ62220.1| 2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 27/185 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLG---ASTALITHK-TSTIGSMSCNPAIGGLGKG 56
           M +  +D+I+ GGG  G   A + A+     A  AL+  K      +     A+   G  
Sbjct: 1   MESVDFDLIICGGGPVGQSVAGLLARRQLPAARIALVDMKSPEQAAADPRTIALS-YGSR 59

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL----------A 106
            ++ E+ A D +         I       ++G      RT  DR+ Y+L           
Sbjct: 60  QILDELGAWDDIGRSATAIEQIHV----SRRG---HFGRTLLDRKDYQLPALGYVARYGE 112

Query: 107 MQREILSQE---NLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           + R + S      L +++  E      E   ++ + ++D  ++R   V+   G       
Sbjct: 113 VNRALASAIAPLGLSLMRPAEAQQIEEEDQHVA-VTLKDGRILRAHLVIQAEGGVFGEQQ 171

Query: 163 HIGKL 167
           H    
Sbjct: 172 HKTLQ 176


>gi|167761738|ref|ZP_02433865.1| hypothetical protein BACSTE_00076 [Bacteroides stercoris ATCC
           43183]
 gi|167700374|gb|EDS16953.1| hypothetical protein BACSTE_00076 [Bacteroides stercoris ATCC
           43183]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIG-SMSCNP----AIGGL 53
           VIV+G G  G  AA    +LG    ++             + IG   + NP    + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKNVRDRKKDLALIGREQTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASSSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIGCGGEVHFETRMDALIIENDEVKGIETDTGRTFLGP-VILATGHSARDVY 254


>gi|220922861|ref|YP_002498163.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
 gi|219947468|gb|ACL57860.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
          Length = 425

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV VIGGG  G  AA   A+ GA  A++       G+   N      G  H      A
Sbjct: 25  HYDVAVIGGGFTGLSAARHLARAGAKVAVLEGAQVGAGASGRNGGHLNNGLAHSYLAAKA 84

Query: 65  LDG-----LMGRVADAAGIQFRVLNVKKG 88
             G      + R  DAA      L  ++G
Sbjct: 85  ELGPERAKALYRALDAAVDTVEALVAEEG 113


>gi|111658300|ref|ZP_01408990.1| hypothetical protein SpneT_02000529 [Streptococcus pneumoniae
           TIGR4]
 gi|17223678|gb|AAK72472.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae]
          Length = 567

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 140


>gi|15901026|ref|NP_345630.1| acetoin dehydrogenase complex, E3 component, dihydrolipoamide
           dehydrogenase, putative [Streptococcus pneumoniae TIGR4]
 gi|14972640|gb|AAK75270.1| putative acetoin dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus pneumoniae
           TIGR4]
          Length = 567

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 140


>gi|115524625|ref|YP_781536.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris
          BisA53]
 gi|115518572|gb|ABJ06556.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris
          BisA53]
          Length = 473

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MPDTSFDVIIIGSGPGGYVAAIRAAQLGLKTAIV 34


>gi|307592503|gb|ADN65329.1| lycopene beta-cyclase [Manihot esculenta]
          Length = 401

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   +K G S  LI      I              G  V E +A+D
Sbjct: 23  DLAVVGGGPAGLAVAQQVSKAGLSVCLIDPSPKLIWP---------NNYGVWVDEFEAMD 73

Query: 67  GLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
            L       +G    + +  K     P  R  R    ++L    +Q+ I +   +   Q 
Sbjct: 74  LLDCLDTTWSGAVVYIDDKTKKDLGRPYGRVNR----KQLKSKMLQKCISN--GVKFHQA 127

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182
           +V     E++  S ++  D   I+ + V+  TG F R ++   K   P           L
Sbjct: 128 KVVKVIHEESK-SLLICNDGITIQAAVVLDATG-FSRCLVQYDK---PYNPGYQVAYGIL 182

Query: 183 FNSFMKFDFDTGRL 196
                +  FD  ++
Sbjct: 183 AEV-EEHPFDIDKM 195


>gi|229167272|ref|ZP_04295012.1| phytoene dehydrogenase enzyme [Bacillus cereus AH621]
 gi|228616182|gb|EEK73267.1| phytoene dehydrogenase enzyme [Bacillus cereus AH621]
          Length = 436

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++DV ++GGG AG  A+   AK G    ++
Sbjct: 2  KNFDVAIVGGGLAGLTASIYLAKAGRKVIVL 32


>gi|288574245|ref|ZP_06392602.1| HI0933 family protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569986|gb|EFC91543.1| HI0933 family protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 429

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIV+GGG AG  AA  AA+ GAS AL+      +G      AI G G+ +L  
Sbjct: 1   MQLEKFDVIVVGGGPAGMMAAGKAAETGASVALVEKN-DRLG---VKLAITGKGRCNLTH 56

Query: 61  -EIDALD-----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            E D L      G  GR   ++  +F V +  +    RG  T+ +R           L+ 
Sbjct: 57  MEKDPLKLVDPFGRNGRFLLSSLSRFGVEDTLEFFRSRGVATKVERG--SRVFPETGLNS 114

Query: 115 ENL------DVIQGEVA--------GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           E++       + +G+V         G       I+ IV    +M   S+V++TTG
Sbjct: 115 EDVVNALSDFMFEGKVKIFTATTARGLTVSDGKITGIVTDRGTM-SASSVIVTTG 168


>gi|296140441|ref|YP_003647684.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Tsukamurella paurometabola DSM 20162]
 gi|296028575|gb|ADG79345.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Tsukamurella paurometabola DSM 20162]
          Length = 393

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G E A+ AAKLG    ++      +  +   PA+G  
Sbjct: 146 VIVLGAGLIGSEVASAAAKLGVKVTVVEPAPLPLARVV-PPAVGER 190


>gi|154504945|ref|ZP_02041683.1| hypothetical protein RUMGNA_02455 [Ruminococcus gnavus ATCC 29149]
 gi|153794828|gb|EDN77248.1| hypothetical protein RUMGNA_02455 [Ruminococcus gnavus ATCC 29149]
          Length = 344

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 9/45 (20%)

Query: 2   INRSYD---------VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +   YD         V+VIGGG AGCEA   AA  G    LI  K
Sbjct: 300 MEDEYDLTPAEKAKQVLVIGGGIAGCEATISAALKGHKVTLIEKK 344


>gi|108799709|ref|YP_639906.1| FAD dependent oxidoreductase [Mycobacterium sp. MCS]
 gi|119868819|ref|YP_938771.1| FAD dependent oxidoreductase [Mycobacterium sp. KMS]
 gi|108770128|gb|ABG08850.1| FAD dependent oxidoreductase [Mycobacterium sp. MCS]
 gi|119694908|gb|ABL91981.1| FAD dependent oxidoreductase [Mycobacterium sp. KMS]
          Length = 447

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-----------G 56
           V+++G G  G   A   A+ G   A+          +  +P    +G+            
Sbjct: 3   VVIVGAGPTGLFCAVALARRGHEVAV----------VDRDPGPPPVGRWRRRGVMQFDHA 52

Query: 57  HLVR--EIDALDGLMGRVADA---AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
           H  R   +DAL   M  V DA   AG      +   G A+   R+  +R L+R+A     
Sbjct: 53  HTFRMPVVDALRAEMPDVVDALTVAGAGIATDSKGSGTALLCRRSTFERVLHRIAAL--- 109

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQD 141
             Q+ +    G V   +     ++ +V+ D
Sbjct: 110 --QDGITRHVGTVQRPHRVDGRVTGVVVGD 137


>gi|15903092|ref|NP_358642.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae R6]
 gi|237650107|ref|ZP_04524359.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae CCRI 1974]
 gi|237822309|ref|ZP_04598154.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298231001|ref|ZP_06964682.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255431|ref|ZP_06979017.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502836|ref|YP_003724776.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|15458669|gb|AAK99852.1| Dihydrolipoamide dehydrogenase [Streptococcus pneumoniae R6]
 gi|17223674|gb|AAK72470.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae D39]
 gi|298238431|gb|ADI69562.1| dihydrolipoamide dehydrogenase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 567

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++D++VIGGG AG  AA  AA+ G   AL+
Sbjct: 109 DDAFDIVVIGGGPAGYVAAIKAAQFGGKVALV 140


>gi|26991142|ref|NP_746567.1| nopaline dehydrogenase, putative [Pseudomonas putida KT2440]
 gi|24986184|gb|AAN70031.1|AE016642_1 nopaline dehydrogenase, putative [Pseudomonas putida KT2440]
          Length = 464

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT----------STIGSMSCNPAIG 51
          ++R++DV+++G G AG  AA V ++ G    ++  +            TI   +    +G
Sbjct: 1  MSRTFDVVIVGAGPAGMSAAVVLSEQGLQVLVVDEQPAPGGQIWRAVETIAHTATGDILG 60

Query: 52 GLGKG--HLVREIDALD 66
             K    LV+   A  
Sbjct: 61 AEYKSGAELVQRFRACG 77


>gi|47094081|ref|ZP_00231807.1| bacteriochlorophyll synthase, 43 kDa subunit [Listeria
          monocytogenes str. 4b H7858]
 gi|47017534|gb|EAL08341.1| bacteriochlorophyll synthase, 43 kDa subunit [Listeria
          monocytogenes str. 4b H7858]
          Length = 30

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDVIVIGGG +G  AA  AA+      
Sbjct: 2  DYDVIVIGGGPSGLMAAISAAEKNKRVL 29


>gi|313890165|ref|ZP_07823800.1| dihydrolipoyl dehydrogenase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121526|gb|EFR44630.1| dihydrolipoyl dehydrogenase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 586

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD++VIGGG AG  AA   A+LG   A++
Sbjct: 125 LADNEYDIVVIGGGPAGYYAAIRGAQLGGKVAIV 158


>gi|310822659|ref|YP_003955017.1| monooxygenase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395731|gb|ADO73190.1| Monooxygenase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IG G AGC +AA  ++LG S  LI
Sbjct: 8  DVVIIGAGPAGCASAAALSQLGHSVLLI 35


>gi|284163567|ref|YP_003401846.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Haloterrigena turkmenica DSM 5511]
 gi|284013222|gb|ADB59173.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Haloterrigena turkmenica DSM 5511]
          Length = 256

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           R+  VIVIGGG AG  AA   AK G  T + 
Sbjct: 11 ERNASVIVIGGGPAGLSAALFTAKNGLETTVF 42


>gi|269940166|emb|CBI48542.1| pyridine nucleotide-disulphide oxidoreductaseprotein
           [Staphylococcus aureus subsp. aureus TW20]
          Length = 440

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 50/303 (16%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 2   KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIPSKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +        LD  
Sbjct: 57  --DGLEGKSFEASYNRKNDVVNALNDKNYHLLADDNNIDVLDFKAQFKSNTEVN-LLDQH 113

Query: 121 QGEVAGF----NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGD 176
              V              +S++     + +   V  +TG           + +  G +  
Sbjct: 114 DDIVDSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI-- 171

Query: 177 SPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT 234
             +    + F         L+ G     R D   + +  T+                 + 
Sbjct: 172 --ALEFASMFANLGSKVTVLERGESFMPREDQDVVAYGITD-----------------LE 212

Query: 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGD-------IKSYG--PRYCPSIEDKIVRF 285
           N+ I      TN+ET  +  +N   +   + D       + + G  P    ++E+  +  
Sbjct: 213 NKGIAL---HTNVETTELSSDNHHTTVHTNVDNFEADAVLLAIGRKPNTDLALENTDIEL 269

Query: 286 GER 288
           G+R
Sbjct: 270 GDR 272


>gi|269216714|ref|ZP_06160568.1| FixC protein [Slackia exigua ATCC 700122]
 gi|269129859|gb|EEZ60942.1| FixC protein [Slackia exigua ATCC 700122]
          Length = 430

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +D IV+G G AG  AA   A+ G +  ++
Sbjct: 3  DFDAIVVGSGLAGSVAALELARAGKAVLVV 32


>gi|238064570|ref|ZP_04609279.1| soluble pyridine nucleotide transhydrogenase [Micromonospora sp.
          ATCC 39149]
 gi|237886381|gb|EEP75209.1| soluble pyridine nucleotide transhydrogenase [Micromonospora sp.
          ATCC 39149]
          Length = 479

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YD++V+G G +G +AA  AAKLG    ++  +   IG +  N    G      +RE   
Sbjct: 15 DYDLLVLGSGPSGQKAAIAAAKLGRRVGIVD-RRDMIGGVCINT---GTVPSKTLREAVL 70

Query: 65 LDGLMGRVADAAGIQFRV 82
              M +  D  G  +RV
Sbjct: 71 YLSGMSQ-RDLYGSSYRV 87


>gi|86361087|ref|YP_472974.1| D-octopine oxidase, subunit B protein [Rhizobium etli CFN 42]
 gi|86285189|gb|ABC94247.1| D-Octopine oxidase, subunit B protein [Rhizobium etli CFN 42]
          Length = 420

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIGGG  G   A   ++ G   A++
Sbjct: 47 DYDVIVIGGGLVGVSIAWGLSRCGQRVAIV 76


>gi|50084222|ref|YP_045732.1| dihydrolipoamide dehydrogenase (E3 component of pyruvate and
          2-oxoglutarate dehydrogenase complexes) [Acinetobacter
          sp. ADP1]
 gi|49530198|emb|CAG67910.1| Dihydrolipoyl dehydrogenase (E3 component of acetoin cleaving
          system) (Dihydrolipoamide dehydrogenase) [Acinetobacter
          sp. ADP1]
          Length = 468

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTI----GSMSCNPAIGGLGK 55
          M +  +D++VIG G  G  AA  AA+LG  TA++       I    G +     + G   
Sbjct: 3  MSDTQFDLVVIGAGPGGYVAAIRAAQLGLKTAIVEATHLGGICLNWGCIPTKALLAGAEL 62

Query: 56 GHLVREIDALDGLMGRV 72
           H  +        +G +
Sbjct: 63 AHQFKHASQFGFELGDI 79


>gi|294498306|ref|YP_003562006.1| sarcosine oxidase, monomeric form [Bacillus megaterium QM B1551]
 gi|294348243|gb|ADE68572.1| sarcosine oxidase, monomeric form [Bacillus megaterium QM B1551]
          Length = 386

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          ++  YDVI+IG G  G  AA   AK G             G   
Sbjct: 1  MSTHYDVIIIGLGAMGSTAAYQLAKKGQRVLG----LEQYGPAH 40


>gi|223933107|ref|ZP_03625099.1| thioredoxin reductase [Streptococcus suis 89/1591]
 gi|223898168|gb|EEF64537.1| thioredoxin reductase [Streptococcus suis 89/1591]
          Length = 305

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 45/151 (29%), Gaps = 43/151 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD +VIG G AG  AA  A +     AL+                          E    
Sbjct: 2   YDTVVIGAGPAGMTAALYAGRSNLKVALL--------------------------ERGIY 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G M   A+     +   +   GPA+               M   +       +    V 
Sbjct: 36  GGQMNNTAEIE--NYPGYDHISGPAL------------AEKMFEPLEKFGVDHIFGTLVR 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
               E+  I  ++ +D  ++   TVVL  G 
Sbjct: 82  --IVEEGQIKKVITEDG-VLETKTVVLAMGA 109


>gi|215446966|ref|ZP_03433718.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis T85]
          Length = 246

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 2  REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 32


>gi|149202086|ref|ZP_01879059.1| dihydrolipoamide dehydrogenase [Roseovarius sp. TM1035]
 gi|149144184|gb|EDM32215.1| dihydrolipoamide dehydrogenase [Roseovarius sp. TM1035]
          Length = 464

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M + +YD+IVIG G  G  AA   A+LG   A++      +G +     C P    L   
Sbjct: 1   MASTTYDMIVIGAGPGGYVAAIRGAQLGLKVAIVE--REHMGGICLNWGCIPTKAMLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   +        +          V+   +G A +     A            ++ +  
Sbjct: 59  EVFHLMHRAKEFGLKAEGIGYDLDAVVKRSRGVAKQLSGGVA-----------HLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGV 161
           + V+ G  +     K  +S +  +     +    ++L TG   R +
Sbjct: 108 VTVVMGAAS--LPAKGKVS-VKTEKGVEELEAKHIILATGARAREL 150


>gi|106709982|gb|ABF82430.1| halogenase [Streptomyces sp. CB2544]
          Length = 458

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSM---SCNP---AIGGLGKGHL 58
           V+VIGGG AG  AA + A+ G    L+   T     IG     SC P    +G   K   
Sbjct: 7   VLVIGGGPAGSTAAGLLARQGVQVTLLERETFPRYHIGESILPSCRPIFELLGVWDKVEA 66

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
                          D   ++F  L      A +  R   D+ L   + +  +   E + 
Sbjct: 67  FGFQPKGGAYFSWGPDEWEVRFAELGADGANAWQVTRADFDKLLLDHSRELGVDVHEGVT 126

Query: 119 VIQGEVAG 126
           V + E  G
Sbjct: 127 VKEIEFDG 134


>gi|21225518|ref|NP_631297.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|8388745|emb|CAB94055.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 540

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 25 SRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 56


>gi|88854374|ref|ZP_01129041.1| putative oxidoreductase [marine actinobacterium PHSC20C1]
 gi|88816182|gb|EAR26037.1| putative oxidoreductase [marine actinobacterium PHSC20C1]
          Length = 479

 Score = 42.2 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +D+IVIG G AG  A+  AA+ GA   L+
Sbjct: 1  MPSEWDLIVIGSGSAGIVASRTAARFGARVLLV 33


>gi|326955316|gb|AEA29010.1| Ferredoxin--NAD(+) reductase [Pseudonocardia dioxanivorans CB1190]
          Length = 397

 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G G  G E AA A + G    ++       GS   +  +G    G L+REI    G
Sbjct: 149 VVVVGAGFIGGEVAAAARRYGLEVTIVE-----FGSAPFSTGVGPQV-GELLREIHIDHG 202

Query: 68  L 68
           +
Sbjct: 203 V 203


>gi|309808283|ref|ZP_07702190.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168486|gb|EFO70597.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 80

 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDVI+IG G  G  AA  A++   S A++
Sbjct: 1  MIKKYDVIIIGAGPGGLTAALYASRANLSVAIV 33


>gi|158339149|ref|YP_001520326.1| lycopene beta cyclase CrtL [Acaryochloris marina MBIC11017]
 gi|158309390|gb|ABW31007.1| lycopene beta cyclase CrtL [Acaryochloris marina MBIC11017]
          Length = 411

 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 16/153 (10%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D +V+G G AG   AA  A+ G +   +T              +     G    E++A
Sbjct: 2   DFDALVVGAGPAGMIIAAALAEQGVNVGSLTASPLR--------QVWPNTYGIWRDELEA 53

Query: 65  LD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           L    L+G   D     F    V  G A        D+   +  +  +  +   +   QG
Sbjct: 54  LGLTDLLGHCWDNCVSYFGKGEVNHGRAY----GLFDKVKLQNHLLAQCEAG-GVTWQQG 108

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           E        +  S +       IR   V+  +G
Sbjct: 109 EATQIE-HDHKHSIVTTGAGESIRVRVVIDASG 140


>gi|330813449|ref|YP_004357688.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Pelagibacter sp. IMCC9063]
 gi|327486544|gb|AEA80949.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Pelagibacter sp. IMCC9063]
          Length = 594

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YD IV+G G +G  AA   ++ G  TA I+
Sbjct: 6  IIDHEYDAIVVGAGGSGLRAAVGLSEAGLKTACIS 40


>gi|322386914|ref|ZP_08060538.1| thioredoxin reductase [Streptococcus cristatus ATCC 51100]
 gi|321269196|gb|EFX52132.1| thioredoxin reductase [Streptococcus cristatus ATCC 51100]
          Length = 304

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD ++IG G AG  AA  AA+     AL+
Sbjct: 3  YDTMIIGAGPAGMTAALYAARSNLKVALL 31


>gi|296271987|ref|YP_003654618.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Arcobacter nitrofigilis DSM 7299]
 gi|296096162|gb|ADG92112.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 660

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  +  D +VIGGG AG  +A  AA+ G ST +++ 
Sbjct: 1  MKIKYCDALVIGGGLAGLRSAVAAAQKGLSTTVLSL 36


>gi|291550950|emb|CBL27212.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family [Ruminococcus
           torques L2-14]
          Length = 641

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIG G AG EAA VA K G    L 
Sbjct: 381 VLVIGAGPAGMEAAYVAKKRGHEVILC 407


>gi|227818906|ref|YP_002822877.1| oxidoreductase [Sinorhizobium fredii NGR234]
 gi|227337905|gb|ACP22124.1| putative oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 439

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++  YDV VIGGG  G  AA   AK GA   ++  +    G+   N      G  H 
Sbjct: 37 VDGHYDVAVIGGGFTGLGAARQLAKAGAKVVVLEAEKVGSGASGRNGGHLNNGLAHS 93


>gi|150377681|ref|YP_001314276.1| FAD dependent oxidoreductase [Sinorhizobium medicae WSM419]
 gi|150032228|gb|ABR64343.1| FAD dependent oxidoreductase [Sinorhizobium medicae WSM419]
          Length = 424

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +DV VIGGG  G  AA   AK GA   ++  + +  G+   N      G  H 
Sbjct: 25 HFDVAVIGGGFTGLAAARQLAKAGAKVVVLEAEKAGWGASGRNGGHLNNGLAHS 78


>gi|29893219|gb|AAP03132.1| dihydrolipoamide dehydrogenase [Paracoccus denitrificans]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YD+IVIG G  G   A  AA+LG   A +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  TYDLIVIGAGPGGYVCAIRAAQLGLKVACVEGR-ETLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMG 70
          E        GLMG
Sbjct: 62 ETHENFEKMGLMG 74


>gi|15920649|ref|NP_376318.1| thioredoxin reductase [Sulfolobus tokodaii str. 7]
 gi|15621432|dbj|BAB65427.1| 335aa long hypothetical thioredoxin reductase [Sulfolobus
          tokodaii str. 7]
          Length = 335

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          N  YDVI++G G AG  AA   ++    T +++   
Sbjct: 8  NEIYDVIIVGAGIAGLSAALYTSRQRMKTLVVSKDL 43


>gi|86138993|ref|ZP_01057564.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseobacter sp. MED193]
 gi|85824224|gb|EAQ44428.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseobacter sp. MED193]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGAGPGGYVSAIRCAQLGLKTAIVEGR-ETLGGTCLNIGCIPSKALLHATHMLH 61

Query: 61 EIDALDGLMGR 71
          E +   G MG 
Sbjct: 62 EAEHNFGSMGL 72


>gi|119383303|ref|YP_914359.1| dihydrolipoamide dehydrogenase [Paracoccus denitrificans PD1222]
 gi|119373070|gb|ABL68663.1| dihydrolipoamide dehydrogenase [Paracoccus denitrificans PD1222]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YD+IVIG G  G   A  AA+LG   A +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  TYDLIVIGAGPGGYVCAIRAAQLGLKVACVEGR-ETLGGTCLNVGCIPSKALLHASHMLH 61

Query: 61 EID---ALDGLMG 70
          E        GLMG
Sbjct: 62 ETHENFEKMGLMG 74


>gi|332360411|gb|EGJ38222.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK355]
          Length = 461

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+ G   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 19  YDVLIIGAGPGGYVAAEEAARFGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 78

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   V   ++        L           ++ I
Sbjct: 79  EARRYG----IESKLERIDFEKLVDRKNQVVASLQSGIHASFKSL----------GIEYI 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           QG+          +      +   I    V+L TG++
Sbjct: 125 QGQAKFVKDRTFSV------NGKEISGKDVILATGSY 155


>gi|325525109|gb|EGD03000.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          TJI49]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|316933977|ref|YP_004108959.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris DX-1]
 gi|315601691|gb|ADU44226.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris DX-1]
          Length = 473

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MSDTSFDVIIIGSGPGGYVAAIRAAQLGFKTAIV 34


>gi|317153869|ref|YP_004121917.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944120|gb|ADU63171.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 453

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLGKG 56
           +YD+IV+G G  G +AA  AA  G   AL+              I +     A   + + 
Sbjct: 2   TYDLIVLGAGPGGFDAATAAAGYGLKVALVEKRSLGGTCLNRGCIPTKLWLGATSAIDEL 61

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLN----VKKGPAVRGPRTQAD 99
           H   ++    G +  V D A +Q RV       +K  A++  +   D
Sbjct: 62  HNQSKLKIASGEV--VVDFAALQARVAKHLAGTRKAMAMQLEKLGVD 106


>gi|218893923|ref|YP_002442792.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa LESB58]
 gi|218774151|emb|CAW29968.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa LESB58]
          Length = 467

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVIVIG G  G  AA  A +LG   A +
Sbjct: 1  MMESYDVIVIGAGPGGYNAAIRAGQLGLKVACV 33


>gi|206562824|ref|YP_002233587.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          cenocepacia J2315]
 gi|198038864|emb|CAR54826.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          cenocepacia J2315]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|192291578|ref|YP_001992183.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris TIE-1]
 gi|192285327|gb|ACF01708.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris TIE-1]
          Length = 473

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MSDTSFDVIIIGSGPGGYVAAIRAAQLGFKTAIV 34


>gi|254253642|ref|ZP_04946959.1| Succinate dehydrogenase or fumarate reductase [Burkholderia
          dolosa AUO158]
 gi|124898287|gb|EAY70130.1| Succinate dehydrogenase or fumarate reductase [Burkholderia
          dolosa AUO158]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|161521189|ref|YP_001584616.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|161522864|ref|YP_001585793.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|189348301|ref|YP_001941497.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|189352635|ref|YP_001948262.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|221196966|ref|ZP_03570013.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD2M]
 gi|221203639|ref|ZP_03576657.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD2]
 gi|221212432|ref|ZP_03585409.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD1]
 gi|160345239|gb|ABX18324.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|160346417|gb|ABX19501.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|189336657|dbj|BAG45726.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|189338439|dbj|BAG47507.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          multivorans ATCC 17616]
 gi|221167531|gb|EEE00001.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD1]
 gi|221175805|gb|EEE08234.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD2]
 gi|221183520|gb|EEE15920.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          multivorans CGD2M]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|36959166|gb|AAQ87591.1| probable Oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 424

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++  YDV VIGGG  G  AA   AK GA   ++  +    G+   N      G  H 
Sbjct: 22 VDGHYDVAVIGGGFTGLGAARQLAKAGAKVVVLEAEKVGSGASGRNGGHLNNGLAHS 78


>gi|78356872|ref|YP_388321.1| L-aspartate oxidase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
 gi|78219277|gb|ABB38626.1| L-aspartate oxidase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
          Length = 534

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          V+VIG G AGC AA   A +G    LIT
Sbjct: 10 VLVIGSGIAGCTAALTLADMGIEVTLIT 37


>gi|77464413|ref|YP_353917.1| putative flavoprotein [Rhodobacter sphaeroides 2.4.1]
 gi|77388831|gb|ABA80016.1| Putative flavoprotein [Rhodobacter sphaeroides 2.4.1]
          Length = 392

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          D +VIGGG AG  AA   A+ G  T +   K S
Sbjct: 2  DALVIGGGPAGLMAAEELARAGLRTVICETKPS 34


>gi|115358064|ref|YP_775202.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          ambifaria AMMD]
 gi|170702916|ref|ZP_02893757.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria IOP40-10]
 gi|171316067|ref|ZP_02905293.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria MEX-5]
 gi|172062861|ref|YP_001810512.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria MC40-6]
 gi|115283352|gb|ABI88868.1| succinate dehydrogenase subunit A [Burkholderia ambifaria AMMD]
 gi|170132175|gb|EDT00662.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria IOP40-10]
 gi|171098769|gb|EDT43562.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria MEX-5]
 gi|171995378|gb|ACB66296.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          ambifaria MC40-6]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|134293107|ref|YP_001116843.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          vietnamiensis G4]
 gi|134136264|gb|ABO57378.1| succinate dehydrogenase subunit A [Burkholderia vietnamiensis G4]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|330447210|ref|ZP_08310860.1| pyridine nucleotide-disulphide oxidoreductase family protein
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
 gi|328491401|dbj|GAA05357.1| pyridine nucleotide-disulphide oxidoreductase family protein
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
          Length = 395

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YDV++IG G AG   AA A K G S  ++ H
Sbjct: 1  MANKYDVVIIGAGAAGLMCAAEAGKRGRSVLVVDH 35


>gi|295703655|ref|YP_003596730.1| sarcosine oxidase, monomeric form [Bacillus megaterium DSM 319]
 gi|294801314|gb|ADF38380.1| sarcosine oxidase, monomeric form [Bacillus megaterium DSM 319]
          Length = 386

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          ++  YDVI+IG G  G  AA   AK G             G   
Sbjct: 1  MSTHYDVIIIGLGAMGSTAAYQLAKKGQRVLG----LEQYGPAH 40


>gi|294677093|ref|YP_003577708.1| dihydrolipoyl dehydrogenase [Rhodobacter capsulatus SB 1003]
 gi|294475913|gb|ADE85301.1| dihydrolipoyl dehydrogenase-2 [Rhodobacter capsulatus SB 1003]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G  AA   A+LG S A++       I    G +     +     
Sbjct: 1   MAAKSFDMIVIGAGPGGYVAAIRGAQLGLSVAVVEREHLGGICLNWGCIPTKALLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+               A G+ + +            R++A  +     +   +   +
Sbjct: 61  FHLMHRAKEFG------LKAEGLGYDLD-------AVVARSRAVAKQLSGGIGHLLKKNK 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLR 159
            + V+ GE       +  + ++     +  I    ++L TG   R
Sbjct: 108 -VTVLMGEAT---LPRPGVVAVKTGAGTEEITAKNIILATGARAR 148


>gi|288932876|ref|YP_003436936.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ferroglobus placidus DSM 10642]
 gi|288895124|gb|ADC66661.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ferroglobus placidus DSM 10642]
          Length = 519

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 37/157 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ ++GGG AG  AA  A +LGA   L          M  NP +G    G L+++     
Sbjct: 166 DIAIVGGGPAGLSAAIYAGRLGAKVVL----------MDENPYLG----GQLIKQTHRFF 211

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G        +G  +           RG R           + +E+   EN+DV       
Sbjct: 212 G--------SGEHYA--------GTRGIRIA-------EILTKEVKEIENVDVRTETKVF 248

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
               K + +    +    +    +V+ TG + R +I 
Sbjct: 249 GIYGKTVAAVEKDRKLLKVNAKKIVIATGAYERTLIF 285


>gi|315499314|ref|YP_004088118.1| ubiquinone biosynthesis hydroxylase, ubih/ubif/visc/coq6 family
          [Asticcacaulis excentricus CB 48]
 gi|315417326|gb|ADU13967.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Asticcacaulis excentricus CB 48]
          Length = 415

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N   D+I++G G AG  AA   AK G    LI
Sbjct: 1  MNTKADLIIVGAGMAGMTAALALAKGGLKPVLI 33


>gi|227500384|ref|ZP_03930446.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Anaerococcus tetradius ATCC 35098]
 gi|227217447|gb|EEI82766.1| electron transfer flavoprotein-quinone oxidoreductase ydiS
           [Anaerococcus tetradius ATCC 35098]
          Length = 435

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 29/173 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVI++GGG AG  A+ V A+      L+                GG   GH + 
Sbjct: 5   MSEDKFDVIIVGGGVAGLAASIVLAENDFEVLLV----ERGDYCGAKNVTGGRLYGHSLE 60

Query: 61  EIDALDGLMGRVADAAGIQFRVL--NVKKGPAVRGPR-------TQADRELYRLAMQREI 111
           +I      +   AD A I+ +V+   +    A               D++     +    
Sbjct: 61  KI------IPNFADEAPIERKVVKEKISMMSAKSSLDIGYSSKELGKDKDSSSYVVLHSK 114

Query: 112 LSQ--------ENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             Q          + +I G  V     E   +  I       +    V++  G
Sbjct: 115 FDQYLAEKAEEAGVAIITGVLVDEILVEDGKVVGIN-ATGEEMYADAVIVADG 166


>gi|227494502|ref|ZP_03924818.1| geranylgeranyl reductase [Actinomyces coleocanis DSM 15436]
 gi|226832236|gb|EEH64619.1| geranylgeranyl reductase [Actinomyces coleocanis DSM 15436]
          Length = 461

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVREID 63
           DV+V+G G AG   A   A+ G   AL+         I      PA         V EI 
Sbjct: 47  DVVVVGAGPAGSSTAYYLARAGVDVALLEKSEFPRDKICGDGLTPA--------AVAEIH 98

Query: 64  ALD 66
            + 
Sbjct: 99  LMG 101


>gi|170702822|ref|ZP_02893673.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
 gi|170132274|gb|EDT00751.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
          Length = 375

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 83/269 (30%), Gaps = 65/269 (24%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----------------LITHKTSTIGSM 44
           M     DV+VIG G  G   A   A+ G                    L+         +
Sbjct: 1   MSEARTDVVVIGAGIVGAACAHELARRGLRVLVVDDASGGATGAGMGHLVAMD-DNAAEL 59

Query: 45  SCN--------PAIGGLGKGHLVR------------EID---------ALDGLMGRVADA 75
           + +           G + +G   R            E+D         A  G+ G + DA
Sbjct: 60  ALSHYSIELWRALSGDMPEGCAYRNCGTLWLAADSNEMDLARTKQATLAAHGVAGELIDA 119

Query: 76  AGIQFR--VLNVKKGPAVRGPRTQADRELYR-LAMQREILSQENLDVIQGEVAGFNTEKN 132
           A +     +L    G A++ P    D  LY  +A    +     + + +      +    
Sbjct: 120 ATLARLEPMLRAGLGGALKIP---GDAILYAPVAASWLLQRAPGITLRRDRAVAVDG--- 173

Query: 133 IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR--MGDSPSNSLFNSFMKFD 190
             +S+ +     +R   VV+  G   R ++    L+   G   + D     + +  ++  
Sbjct: 174 --ASVTLASGDTLRAERVVVANGVAARTLLPELPLRPKKGHLLITDRYPGQVSHQLVELG 231

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
           +      +      DG ++ ++   +   
Sbjct: 232 YAASAHAS------DGTSVAFNVQPRPTG 254


>gi|168334533|ref|ZP_02692694.1| NADH:flavin oxidoreductase, possible NADH oxidase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 652

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+VIG G AG EAA V A  G  T ++
Sbjct: 393 VVVIGAGLAGLEAARVLAIRGFKTIIL 419


>gi|163737827|ref|ZP_02145244.1| hypothetical protein RGBS107_19888 [Phaeobacter gallaeciensis
          BS107]
 gi|161389353|gb|EDQ13705.1| hypothetical protein RGBS107_19888 [Phaeobacter gallaeciensis
          BS107]
          Length = 505

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
           +D IVIG G+AG  AAA   + G  T L+  H  
Sbjct: 3  DFDAIVIGAGNAGLSAAAGMQRKGLRTLLLERHNI 37


>gi|117956078|gb|ABK58623.1| putative dehydrogenase E3 component [Azoarcus anaerobius]
          Length = 465

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ VIGGG  G  AA  AA+LG  TALI
Sbjct: 1  MAQEKFDLTVIGGGPGGYVAAIRAAQLGLRTALI 34


>gi|90581464|ref|ZP_01237258.1| hypothetical protein VAS14_22082 [Vibrio angustum S14]
 gi|90437325|gb|EAS62522.1| hypothetical protein VAS14_22082 [Vibrio angustum S14]
          Length = 395

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YDV++IG G AG   AA A K G S  ++ H
Sbjct: 1  MANKYDVVIIGAGAAGLMCAAEAGKRGRSVLVVDH 35


>gi|89073857|ref|ZP_01160364.1| hypothetical protein SKA34_17030 [Photobacterium sp. SKA34]
 gi|89050392|gb|EAR55893.1| hypothetical protein SKA34_17030 [Photobacterium sp. SKA34]
          Length = 395

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YDV++IG G AG   AA A K G S  ++ H
Sbjct: 1  MANKYDVVIIGAGAAGLMCAAEAGKRGRSVLVVDH 35


>gi|87124316|ref|ZP_01080165.1| geranylgeranyl hydrogenase [Synechococcus sp. RS9917]
 gi|86167888|gb|EAQ69146.1| geranylgeranyl hydrogenase [Synechococcus sp. RS9917]
          Length = 457

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 19/135 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA + AK G  T L   K     +  C    GG     +V E +  D 
Sbjct: 4   VAVVGGGPSGSCAAEILAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVDEFEIPD- 56

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREIL--------SQENLD 118
               + D      ++++       ++      D+  Y    +RE+         ++    
Sbjct: 57  ---HIIDRKVRNMKMISPSNREVDIKLDPLGYDQNAYIGMCRREVFDAFLRNRAAELGTT 113

Query: 119 VIQGEVAGFNTEKNI 133
           ++ G V   +T    
Sbjct: 114 LVNGLVQKIDTGNQR 128


>gi|163845769|ref|YP_001633813.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Chloroflexus aurantiacus J-10-fl]
 gi|222523476|ref|YP_002567946.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Chloroflexus sp. Y-400-fl]
 gi|163667058|gb|ABY33424.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447355|gb|ACM51621.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Chloroflexus sp. Y-400-fl]
          Length = 445

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGG  G E A++ ++LG     +      +GS    P      +  L   + A  
Sbjct: 171 DIIVIGGGPTGSEFASLFSRLGVKVTWL------VGSPGVLPMFATNARSTLAAAMQAHG 224


>gi|116052977|ref|YP_793295.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|254244273|ref|ZP_04937595.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa 2192]
 gi|115588198|gb|ABJ14213.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126197651|gb|EAZ61714.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa 2192]
          Length = 467

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVIVIG G  G  AA  A +LG   A +
Sbjct: 1  MMESYDVIVIGAGPGGYNAAIRAGQLGLKVACV 33


>gi|15600022|ref|NP_253516.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa PAO1]
 gi|107103928|ref|ZP_01367846.1| hypothetical protein PaerPA_01004999 [Pseudomonas aeruginosa
          PACS2]
 gi|254238449|ref|ZP_04931772.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa C3719]
 gi|313109819|ref|ZP_07795754.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa 39016]
 gi|81539717|sp|Q9HUY1|DLDH3_PSEAE RecName: Full=Dihydrolipoyl dehydrogenase 3; AltName:
          Full=Dihydrolipoamide dehydrogenase 3; Short=LPD-3
 gi|9951098|gb|AAG08214.1|AE004896_4 dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa PAO1]
 gi|126170380|gb|EAZ55891.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa C3719]
 gi|310882256|gb|EFQ40850.1| dihydrolipoamide dehydrogenase 3 [Pseudomonas aeruginosa 39016]
          Length = 467

 Score = 41.9 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVIVIG G  G  AA  A +LG   A +
Sbjct: 1  MMESYDVIVIGAGPGGYNAAIRAGQLGLKVACV 33


>gi|327482603|gb|AEA85913.1| flavoprotein [Pseudomonas stutzeri DSM 4166]
          Length = 394

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV+VIG G AG   A  AA  G    L                + G G+ +
Sbjct: 5  DVVVIGAGAAGLMCAFTAAARGRQVLL----LDHANKAGKKILMSGGGRCN 51


>gi|182412609|ref|YP_001817675.1| L-aspartate oxidase [Opitutus terrae PB90-1]
 gi|177839823|gb|ACB74075.1| L-aspartate oxidase [Opitutus terrae PB90-1]
          Length = 518

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M     D +VIG G AG   A   A+ G    L+   
Sbjct: 1  METLRTDCLVIGAGLAGSAYALQMARRGFKVELLALD 37


>gi|149173341|ref|ZP_01851971.1| probable alkylhalidase [Planctomyces maris DSM 8797]
 gi|148847523|gb|EDL61856.1| probable alkylhalidase [Planctomyces maris DSM 8797]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YDV++IG G AG   AA+ A+ G +T +     +         ++       L R 
Sbjct: 12  LESEYDVVIIGAGPAGSTVAALLAEQGRNTLV--VDRARFPRFHVGESLIPETYWPLKRL 69

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                           +QF      +         +         + R    Q  +D  Q
Sbjct: 70  GLIERLKQTAFPKKLSVQFVTDEGVETMPFYFHDYKDHESSQTWQVYRAEFDQMLIDNAQ 129

Query: 122 ---------GEVAGFNTEKNIISSIVMQDNSM----IRCSTVVLTTGT 156
                     +V    T+   ++ + ++  +     I    VV  +G 
Sbjct: 130 SKGATFHNEAQVTDLLTQDEQVTGVKVKLGNQETRNITARLVVDASGQ 177


>gi|146284220|ref|YP_001174373.1| flavoprotein [Pseudomonas stutzeri A1501]
 gi|145572425|gb|ABP81531.1| predicted flavoprotein [Pseudomonas stutzeri A1501]
          Length = 393

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV+VIG G AG   A  AA  G    L                + G G+ +
Sbjct: 4  DVVVIGAGAAGLMCAFTAAARGRQVLL----LDHANKAGKKILMSGGGRCN 50


>gi|91785327|ref|YP_560533.1| hypothetical protein Bxe_A0452 [Burkholderia xenovorans LB400]
 gi|91689281|gb|ABE32481.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Burkholderia xenovorans LB400]
          Length = 390

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 31/175 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG---------- 52
           ++++D  VIGGG  G  AA    + G   AL+           C P   G          
Sbjct: 5   HQTFDAAVIGGGLVGKTAALALTQGGLRVALLAQ--------PCAPLPPGASFDSRVYAL 56

Query: 53  -LGKGHLVREIDALDGL----MGRVADA--AGIQFRVLNVKKGPA-VRGPRTQADRELYR 104
                 L+  +     L    +G V D    G     L+     A V       +  +  
Sbjct: 57  SSSSQALLERLRVWQALDLTRLGPVYDMRVYGDAHAELHFSAFQASVPQLAWIVESSVIE 116

Query: 105 LAMQREILSQENLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
            A+   +  Q NL  I  + +   F  +    +S+ + + ++I    VV   G  
Sbjct: 117 RALDAALRFQPNLTWIDTRAQALDFTADS---ASVGLANGNVIEADLVVGADGAH 168


>gi|83591236|ref|YP_431245.1| thioredoxin reductase [Moorella thermoacetica ATCC 39073]
 gi|83574150|gb|ABC20702.1| thioredoxin reductase [Moorella thermoacetica ATCC 39073]
          Length = 304

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD+++IGGG AG  AA   A+ G +T L+  
Sbjct: 3  YDLMIIGGGPAGLTAALYGARGGLNTILLEM 33


>gi|119718280|ref|YP_925245.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Nocardioides sp. JS614]
 gi|119538941|gb|ABL83558.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Nocardioides sp. JS614]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          M +  YDV+V+G G AG   A  AA  GA   L+       G++  +
Sbjct: 1  MDSVEYDVLVVGAGTAGIPCAVEAALAGARVLLVEKDARIGGTLHIS 47


>gi|331001404|ref|ZP_08325024.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329568286|gb|EGG50097.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 504

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 21/100 (21%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG---------- 52
           + ++DVIV+G G AG  AA  A K GA+  +       + +   N  I G          
Sbjct: 37  DETFDVIVVGSGFAGLAAAIEAKKAGANVIV----LEKMPTAGGNSIINGGILTATGCPQ 92

Query: 53  -------LGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
                    K  L ++I      M  V     +  RVL+ 
Sbjct: 93  QKKHNIEDSKELLEKDILVAGNYMNDVKKVHQMVDRVLST 132


>gi|322494429|emb|CBZ29731.1| putative dihydrolipoamide dehydrogenase [Leishmania mexicana
          MHOM/GT/2001/U1103]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIGGG  G  AA  AA+LG  TA I
Sbjct: 11 SYDVTVIGGGPGGYVAAIKAAQLGLKTACI 40


>gi|303257296|ref|ZP_07343310.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860787|gb|EFL83864.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium
           1_1_47]
          Length = 505

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 37/191 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLVREIDAL 65
           D++V+G G AG  AA   A+LG    L+       G S           + + +R     
Sbjct: 31  DLVVVGAGSAGLSAAVQGAELGKKVVLLEKNPYVGGNSQHAEGLFAVDSEWNRLRSDPLT 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGP-----------AVRGPRTQADRELY-RLAMQREILS 113
                                K             A  G   +  RE   +      I +
Sbjct: 91  RQQAYEAFIKKQNHLVDPYKNKDFVEGSGENISWLASHGIEFEVRRETPDKDNTWHIIKN 150

Query: 114 QENLD----VIQGE----------------VAGFNTEKNIISSIVMQD----NSMIRCST 149
            +  +    +I+G                      T+   +  +V +D       I    
Sbjct: 151 YKGTNHGAGLIKGMKDAADKLGVTTMVSTPATDLITKDGRVVGVVAKDAKGNTYTINSKA 210

Query: 150 VVLTTGTFLRG 160
           V+L +G+F   
Sbjct: 211 VILASGSFGDD 221


>gi|209965544|ref|YP_002298459.1| dihydrolipoamide dehydrogenase [Rhodospirillum centenum SW]
 gi|209959010|gb|ACI99646.1| dihydrolipoamide dehydrogenase [Rhodospirillum centenum SW]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          M +  +D++VIG G  G  AA  AA+LG  TA +  +  T+G    ++ C P+
Sbjct: 1  MADMQFDLVVIGSGPGGYVAAIRAAQLGLKTACVEMR-DTLGGTCLNIGCIPS 52


>gi|167568032|ref|ZP_02360948.1| oxidoreductase, FAD-binding protein [Burkholderia oklahomensis
          EO147]
 gi|167574914|ref|ZP_02367788.1| oxidoreductase, FAD-binding protein [Burkholderia oklahomensis
          C6786]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGYSVAVVEASKVGWAASGRNGGQMIGGFACGIDTFE 90


>gi|154343531|ref|XP_001567711.1| dihydrolipoamide dehydrogenase [Leishmania braziliensis
          MHOM/BR/75/M2904]
 gi|134065043|emb|CAM43155.1| putative dihydrolipoamide dehydrogenase [Leishmania braziliensis
          MHOM/BR/75/M2904]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIGGG  G  AA  AA+LG  TA I
Sbjct: 11 SYDVTVIGGGPGGYVAAIKAAQLGLKTACI 40


>gi|91201475|emb|CAJ74535.1| similar to flavocytochrome C fumarate reductase [Candidatus
          Kuenenia stuttgartiensis]
          Length = 411

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD IVIGGG AG  AA  A + G S  L+   
Sbjct: 1  MADVYDFIVIGGGPAGMTAAGRAGERGKSVILLEKN 36


>gi|157874347|ref|XP_001685657.1| dihydrolipoamide dehydrogenase [Leishmania major strain Friedlin]
 gi|68128729|emb|CAJ08862.1| putative dihydrolipoamide dehydrogenase [Leishmania major strain
          Friedlin]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIGGG  G  AA  AA+LG  TA I
Sbjct: 11 SYDVTVIGGGPGGYVAAIKAAQLGLKTACI 40


>gi|146097055|ref|XP_001468025.1| dihydrolipoamide dehydrogenase [Leishmania infantum JPCM5]
 gi|44804791|gb|AAS47708.1| dihydrolipoamide dehydrogenase [Leishmania major]
 gi|134072391|emb|CAM71099.1| putative dihydrolipoamide dehydrogenase [Leishmania infantum
          JPCM5]
 gi|322501995|emb|CBZ37079.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIGGG  G  AA  AA+LG  TA I
Sbjct: 11 SYDVTVIGGGPGGYVAAIKAAQLGLKTACI 40


>gi|78062997|ref|YP_372905.1| succinate dehydrogenase flavoprotein subunit [Burkholderia sp.
          383]
 gi|77970882|gb|ABB12261.1| succinate dehydrogenase subunit A [Burkholderia sp. 383]
          Length = 592

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|33239691|ref|NP_874633.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237216|gb|AAP99285.1| Thioredoxin reductase [Prochlorococcus marinus subsp. marinus
          str. CCMP1375]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M     DV+++GGG AGC  A  +++    T +          +  NPA+G L   H
Sbjct: 1  METIEADVVIVGGGPAGCSCALYSSRADLKTVI----------LDKNPAVGALAITH 47


>gi|116619712|ref|YP_821868.1| hypothetical protein Acid_0577 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222874|gb|ABJ81583.1| putative secreted protein, putative xanthan lyase related
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 541

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 26/178 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI- 62
           ++YD++V GG   G   A   A++G    L+  +            IGG+  G L R   
Sbjct: 17  QTYDLVVYGGTAGGAMTAISGARMGLKAVLLEPRR----------HIGGMVSGGLSRTDV 66

Query: 63  ---DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
              + + G        AG  + +    +  A   P            + R +L Q  + V
Sbjct: 67  GKREVIGGYALEFYWRAGNAYDMAQHLQEIA-WLPEPNV-----AETIFRAMLQQAGVTV 120

Query: 120 IQG----EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +      E  G       I SI M+  +          T  +   ++    +    GR
Sbjct: 121 VFNQRLREKDGVKKSGGRIQSITMESGAQYAAKIFADCT--YEGDLMAQAGVTYTWGR 176


>gi|319901029|ref|YP_004160757.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bacteroides helcogenes P 36-108]
 gi|319416060|gb|ADV43171.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Bacteroides helcogenes P 36-108]
          Length = 532

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 55/177 (31%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + IG         N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQIGRQQTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNADKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFETRMDVLIIEGDEVKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|260172740|ref|ZP_05759152.1| dihydrolipoamide dehydrogenase [Bacteroides sp. D2]
 gi|315921029|ref|ZP_07917269.1| dihydrolipoamide dehydrogenase [Bacteroides sp. D2]
 gi|313694904|gb|EFS31739.1| dihydrolipoamide dehydrogenase [Bacteroides sp. D2]
          Length = 447

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKAGLSVLLIEKN 34


>gi|253569065|ref|ZP_04846475.1| dihydrolipoamide dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251841084|gb|EES69165.1| dihydrolipoamide dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 447

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKAGLSVLLIEKN 34


>gi|295130786|ref|YP_003581449.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes SK137]
 gi|291376246|gb|ADE00101.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes SK137]
 gi|313772035|gb|EFS38001.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL074PA1]
 gi|313810235|gb|EFS47956.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL083PA1]
 gi|313830565|gb|EFS68279.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL007PA1]
 gi|313833601|gb|EFS71315.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL056PA1]
 gi|314973566|gb|EFT17662.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL053PA1]
 gi|314975788|gb|EFT19883.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL045PA1]
 gi|314983733|gb|EFT27825.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL005PA1]
 gi|315080432|gb|EFT52408.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL078PA1]
 gi|315095840|gb|EFT67816.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL038PA1]
 gi|327326391|gb|EGE68181.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL096PA2]
 gi|327445713|gb|EGE92367.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL043PA2]
 gi|327448303|gb|EGE94957.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL043PA1]
 gi|328760918|gb|EGF74483.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL099PA1]
          Length = 467

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIETEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|187779596|ref|ZP_02996069.1| hypothetical protein CLOSPO_03192 [Clostridium sporogenes ATCC
           15579]
 gi|187773221|gb|EDU37023.1| hypothetical protein CLOSPO_03192 [Clostridium sporogenes ATCC
           15579]
          Length = 407

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 138/428 (32%), Gaps = 79/428 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      LI      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILIERN-EKVG---KKLYITGKGRCNVTNSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDTIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            + N+ ++  + +   + E + I  +  +    I+    +L TG                
Sbjct: 119 IKRNVKILLNKRITKIHKEDSCIKYVETEKGEKIKGDYFILCTGG------VSYPQTGSE 172

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFM 229
           G         L ++  K       L+T      D + +     E +  D   + +  +F 
Sbjct: 173 GDGHKIAEK-LGHNIKKLKPSLVPLETKEEWIKDLQGLALKNVEIKVIDSENKTLYKNFG 231

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR----- 284
               T+  I   I  T   +  I  +N+K        I          ++++I +     
Sbjct: 232 EMLFTHFGISGPIILT--ASSVIDRDNLK------VFINLKPALSPNDLDERIQKDFKKY 283

Query: 285 ----FGERNGHQIFLEPEGLNTDV--VYPNGISTALPEEIQHQFIRTIPGL--------- 329
               F       +      +  ++  + PN    ++ +E +   +  +  L         
Sbjct: 284 CNKDFSNSLNDLLPKRLIDIIINLSKIDPNKKVNSITKEERKNLVHLLQNLPLTIKGKRS 343

Query: 330 -EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTG 374
            ++  +   G  +    I+P     T+++K I+ L+ AG              QI  +TG
Sbjct: 344 IKEAIVTSGGVDVLN--IDP----STMKSKIINNLYFAGELIDVDAFTGGFNIQIALSTG 397

Query: 375 YEEAAAQG 382
           Y      G
Sbjct: 398 YLAGLKVG 405


>gi|209549207|ref|YP_002281124.1| dihydrolipoamide dehydrogenase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209534963|gb|ACI54898.1| dihydrolipoamide dehydrogenase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
          Length = 481

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRAAQLGLKTAIV 33


>gi|220928488|ref|YP_002505397.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium cellulolyticum H10]
 gi|219998816|gb|ACL75417.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium cellulolyticum H10]
          Length = 426

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +++  D+I++G G AG  AA  AA++G    ++    S
Sbjct: 1  MSKIVDLIIVGAGPAGLMAAKTAAEIGLRVVIVEKNVS 38


>gi|75676005|ref|YP_318426.1| dihydrolipoamide dehydrogenase [Nitrobacter winogradskyi Nb-255]
 gi|74420875|gb|ABA05074.1| dihydrolipoamide dehydrogenase [Nitrobacter winogradskyi Nb-255]
          Length = 477

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  +DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MADTHFDVIIIGSGPGGYVAAIRAAQLGLKTAIV 34


>gi|29348595|ref|NP_812098.1| dihydrolipoamide dehydrogenase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|29340500|gb|AAO78292.1| dihydrolipoamide dehydrogenase [Bacteroides thetaiotaomicron
          VPI-5482]
          Length = 447

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKAGLSVLLIEKN 34


>gi|50083969|ref|YP_045479.1| oxidoreductase [Acinetobacter sp. ADP1]
 gi|49529945|emb|CAG67657.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Acinetobacter sp. ADP1]
          Length = 398

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          ++  YDVIV+G G +G   A+ AAK G S  +          +     + G GK +
Sbjct: 1  MSFQYDVIVLGAGASGLMLASHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 52


>gi|254241321|ref|ZP_04934643.1| hypothetical protein PA2G_02016 [Pseudomonas aeruginosa 2192]
 gi|126194699|gb|EAZ58762.1| hypothetical protein PA2G_02016 [Pseudomonas aeruginosa 2192]
          Length = 616

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++++YD+++ GGGH G  AA   AK G S  ++      +G
Sbjct: 1  MSKTYDIVIAGGGHNGLVAACYLAKAGRSVCVVEKN-DKVG 40


>gi|301165814|emb|CBW25387.1| putative succinate dehydrogenase [Bacteriovorax marinus SJ]
          Length = 636

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + ++VIV+G G +G  AAA  A+LG       
Sbjct: 31 KKKFEVIVVGSGLSGAGAAATLAELGYKVNCFC 63


>gi|292669994|ref|ZP_06603420.1| thioredoxin-disulfide reductase [Selenomonas noxia ATCC 43541]
 gi|292648360|gb|EFF66332.1| thioredoxin-disulfide reductase [Selenomonas noxia ATCC 43541]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          D+I+IG G AG  AA  A ++   T ++ +  
Sbjct: 9  DIIIIGAGMAGLTAALYAGRMNLRTLVLENSL 40


>gi|288920873|ref|ZP_06415169.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Frankia sp. EUN1f]
 gi|288347705|gb|EFC81986.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Frankia sp. EUN1f]
          Length = 470

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG G  G +AA  AAKLG S A++  K   IG +  N    G      +RE     
Sbjct: 5   DVLVIGSGPGGQKAAIAAAKLGRSVAVVD-KRDMIGGVCINT---GTIPSKTLREAVMY- 59

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVIQGEV 124
            L G        Q   L  +   +    RTQ    RE   + + R  L++  + V+ G  
Sbjct: 60  -LTGLAQREVYGQSYRLKDEITVSDLSARTQHVIGRE---IDVIRSQLTRNRVQVLSGLA 115

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
              +     + S    +   +R + +++ TGT
Sbjct: 116 TFIDPHTVSVRSPGGVEERQVRATKIIIATGT 147


>gi|209549110|ref|YP_002281027.1| soluble pyridine nucleotide transhydrogenase [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209534866|gb|ACI54801.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M+ + YD++V+G G AG   A  AAKLG    +I  
Sbjct: 1  MMLQ-YDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 35


>gi|159038116|ref|YP_001537369.1| geranylgeranyl reductase [Salinispora arenicola CNS-205]
 gi|157916951|gb|ABV98378.1| geranylgeranyl reductase [Salinispora arenicola CNS-205]
          Length = 382

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D+ V+G G AG  AA VAA+ G  T ++
Sbjct: 4  WDLAVVGAGPAGLSAAYVAARAGVDTVVL 32


>gi|159036716|ref|YP_001535969.1| FAD dependent oxidoreductase [Salinispora arenicola CNS-205]
 gi|157915551|gb|ABV96978.1| FAD dependent oxidoreductase [Salinispora arenicola CNS-205]
          Length = 496

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT----------STIGSMSCNPAI 50
          +N  YD IVIG G+AG  +AA   + G  T L+  H                       +
Sbjct: 1  MNDDYDAIVIGAGNAGLSSAATLQRGGRRTLLVERHNVPGGAATSFVRGRFEFEVSLHQL 60

Query: 51 GGLGKGHLVREIDALD 66
          GG+G G L + +D LD
Sbjct: 61 GGMGNGPLRQVLDQLD 76


>gi|55980952|ref|YP_144249.1| L-aspartate oxidase [Thermus thermophilus HB8]
 gi|55772365|dbj|BAD70806.1| L-aspartate oxidase [Thermus thermophilus HB8]
          Length = 493

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 24/183 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS------CNPAIGGLG 54
           M  RS D++V+G G AG  AA  A + GA   L++      GS          P      
Sbjct: 1   MERRSTDLLVLGAGVAGVYAALAAEERGARVLLVSKDPLPAGSTPWAQGGVAFPVGEEDL 60

Query: 55  KGHLVREIDALDGLMGR-----VADAAGIQFRVLN----------VKKGPAVRGPRTQAD 99
           + HL   + A  GL+       + + A      L            ++G   R       
Sbjct: 61  EAHLRDTLVAGRGLVEEGVARSILEEAPRHLERLRAFGLPFHPEPTREGGHSRARVFHLG 120

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN---SMIRCSTVVLTTGT 156
            +   L +   +L + +  V+  +        N ++  ++        +R   V+L TG 
Sbjct: 121 GDRSGLLLLEGLLKRLSTPVVPAQALSLLVSGNRVAGALLWGPGGLWEVRAGAVLLATGG 180

Query: 157 FLR 159
           F R
Sbjct: 181 FGR 183


>gi|54027576|ref|YP_121818.1| succinate dehydrogenase flavoprotein subunit [Nocardia farcinica
          IFM 10152]
 gi|54019084|dbj|BAD60454.1| putative succinate dehydrogenase flavoprotein subunit [Nocardia
          farcinica IFM 10152]
          Length = 646

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +YDV+VIG G AG  A   A + G S A++       G      A GG    
Sbjct: 7  HNYDVVVIGAGGAGLRAVIEARERGLSVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|107026775|ref|YP_624286.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          cenocepacia AU 1054]
 gi|116692033|ref|YP_837566.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          cenocepacia HI2424]
 gi|170735974|ref|YP_001777234.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          cenocepacia MC0-3]
 gi|254248722|ref|ZP_04942042.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Burkholderia cenocepacia PC184]
 gi|105896149|gb|ABF79313.1| succinate dehydrogenase subunit A [Burkholderia cenocepacia AU
          1054]
 gi|116650033|gb|ABK10673.1| succinate dehydrogenase subunit A [Burkholderia cenocepacia
          HI2424]
 gi|124875223|gb|EAY65213.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Burkholderia cenocepacia PC184]
 gi|169818162|gb|ACA92744.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          cenocepacia MC0-3]
          Length = 591

 Score = 41.9 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  AA   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGLRAALQLSRAGLSVGVLS 42


>gi|284167114|ref|YP_003405392.1| FAD dependent oxidoreductase [Haloterrigena turkmenica DSM 5511]
 gi|284016769|gb|ADB62719.1| FAD dependent oxidoreductase [Haloterrigena turkmenica DSM 5511]
          Length = 438

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 16/133 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+G G AG  AA   AK G   AL+          +  P +  +  G L  EI  +
Sbjct: 7   FDVVVVGSGRAGTAAAYKLAKEGVDVALV--------ERAKQPGMKNVTGGVLYGEI--M 56

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D L+    + A ++  V+               D E+      +E+  + N  ++ G+  
Sbjct: 57  DDLVPEYPEEAPLERHVVEHN------IKLLHGDAEVGISYRDQELREEPNYTLMLGKFD 110

Query: 126 GFNTEKNIISSIV 138
            +  EK      V
Sbjct: 111 RWFVEKAEERGAV 123


>gi|229099584|ref|ZP_04230512.1| Thioredoxin reductase [Bacillus cereus Rock3-29]
 gi|229105759|ref|ZP_04236388.1| Thioredoxin reductase [Bacillus cereus Rock3-28]
 gi|229118648|ref|ZP_04248000.1| Thioredoxin reductase [Bacillus cereus Rock1-3]
 gi|228664840|gb|EEL20330.1| Thioredoxin reductase [Bacillus cereus Rock1-3]
 gi|228677648|gb|EEL31896.1| Thioredoxin reductase [Bacillus cereus Rock3-28]
 gi|228683880|gb|EEL37830.1| Thioredoxin reductase [Bacillus cereus Rock3-29]
          Length = 321

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 7  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 38


>gi|258404554|ref|YP_003197296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796781|gb|ACV67718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 674

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+V+GGG AG +AA   AK G    L+    S  G M
Sbjct: 143 DVLVVGGGIAGIQAALDVAKSGHRVHLVEKAPSIGGHM 180


>gi|254475967|ref|ZP_05089353.1| gamma-glutamylputrescine oxidoreductase [Ruegeria sp. R11]
 gi|214030210|gb|EEB71045.1| gamma-glutamylputrescine oxidoreductase [Ruegeria sp. R11]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV +IGGG+ G  AA   A+ G S  L+       G+   N   G LG G  + + + L+
Sbjct: 40  DVCIIGGGYTGLSAALHLAEAGRSVILLEANRVGFGASGRNG--GQLGSGQRM-DQEGLE 96

Query: 67  GLMGR 71
           GLMGR
Sbjct: 97  GLMGR 101


>gi|212537921|ref|XP_002149116.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210068858|gb|EEA22949.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 612

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          DV+V+G G AG  AA   A+   +  +I  +   I +  
Sbjct: 9  DVLVVGAGPAGFMAALTLARYNINVRIIDARPERIQTGH 47


>gi|160947290|ref|ZP_02094457.1| hypothetical protein PEPMIC_01223 [Parvimonas micra ATCC 33270]
 gi|158446424|gb|EDP23419.1| hypothetical protein PEPMIC_01223 [Parvimonas micra ATCC 33270]
          Length = 571

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           + +  YDV+VIG G AG  +A  AA+ GA  A+  + 
Sbjct: 118 LKDGEYDVVVIGAGPAGYYSAIKAAQKGAKVAIAENN 154


>gi|146302612|ref|YP_001197203.1| FAD dependent oxidoreductase [Flavobacterium johnsoniae UW101]
 gi|146157030|gb|ABQ07884.1| FAD dependent oxidoreductase [Flavobacterium johnsoniae UW101]
          Length = 525

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGG------LGK 55
            ++DVI+IGGG +G   A  AA  G  T L+     +   S      + G       G 
Sbjct: 13 TENWDVIIIGGGASGLGTAIDAASRGYKTILLEAVDFAKGTSSRSTKLVHGGVRYLAQGD 72

Query: 56 GHLVREIDALDGLMGRVA 73
           HLVRE     GL+ + A
Sbjct: 73 VHLVREALKERGLLAQNA 90


>gi|229135960|ref|ZP_04264721.1| Thioredoxin reductase [Bacillus cereus BDRD-ST196]
 gi|228647502|gb|EEL03576.1| Thioredoxin reductase [Bacillus cereus BDRD-ST196]
          Length = 323

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 9  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 40


>gi|1333650|dbj|BAA09716.1| sarcosine oxidase [Arthrobacter sp. TE1826]
 gi|3116221|dbj|BAA25926.1| sarcosine oxidase [Arthrobacter sp.]
          Length = 389

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          I + YDVIV+G G  G  A    +K G  T L+     +      N +  G 
Sbjct: 3  IKKDYDVIVVGAGSMGMAAGYYLSKQGVKTLLV----DSFDPPHTNGSHHGD 50


>gi|150019340|ref|YP_001311594.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
          beijerinckii NCIMB 8052]
 gi|149905805|gb|ABR36638.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
          beijerinckii NCIMB 8052]
          Length = 745

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL- 65
          D+ VIGGG AG  AA  AA+ G S +L+      +G  S +  I     G     ++   
Sbjct: 9  DITVIGGGLAGVCAAISAARNGKSVSLV-QNRGILGGNSSS-EIRVWVCGATKHGVNRYA 66

Query: 66 --DGLMGRV 72
             G+MG +
Sbjct: 67 RETGIMGEL 75


>gi|47570057|ref|ZP_00240717.1| dehydrogenase [Bacillus cereus G9241]
 gi|47553259|gb|EAL11650.1| dehydrogenase [Bacillus cereus G9241]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++            +   GG  +G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGRKVIVLE----------RSSRFGG--RGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|313228091|emb|CBY23241.1| unnamed protein product [Oikopleura dioica]
          Length = 562

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + N+ YD +V+G GH G  AA   AK G   A+I
Sbjct: 34 LKNKRYDALVVGAGHNGLIAATYLAKKGKKVAVI 67


>gi|302786906|ref|XP_002975224.1| hypothetical protein SELMODRAFT_174745 [Selaginella moellendorffii]
 gi|300157383|gb|EFJ24009.1| hypothetical protein SELMODRAFT_174745 [Selaginella moellendorffii]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------HKTSTIGS-MSCNPAI 50
            + YD IV+G G  G  AA+  A  GAS  L+             K       +  +   
Sbjct: 65  EKRYDAIVVGAGIGGLVAASQLAIRGASVLLLEKYVIPGGSAGFFKRDGYTFDVGSSVMF 124

Query: 51  GGLGKG---HLVREIDALDGLMGRVADAAGIQFRVLN 84
           G   KG    + R + A+   +  + D   + + + N
Sbjct: 125 GFSDKGSINLITRALAAVGRKLELIPDPTTVHYHMPN 161


>gi|302791735|ref|XP_002977634.1| hypothetical protein SELMODRAFT_176387 [Selaginella moellendorffii]
 gi|300155004|gb|EFJ21638.1| hypothetical protein SELMODRAFT_176387 [Selaginella moellendorffii]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------HKTSTIGS-MSCNPAI 50
            + YD IV+G G  G  AA+  A  GAS  L+             K       +  +   
Sbjct: 65  EKRYDAIVVGAGIGGLVAASQLAIRGASVLLLEKYVIPGGSAGFFKRDGYTFDVGSSVMF 124

Query: 51  GGLGKG---HLVREIDALDGLMGRVADAAGIQFRVLN 84
           G   KG    + R + A+   +  + D   + + + N
Sbjct: 125 GFSDKGSINLITRALAAVGRKLELIPDPTTVHYHMPN 161


>gi|298386968|ref|ZP_06996522.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 1_1_14]
 gi|298260118|gb|EFI02988.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 1_1_14]
          Length = 447

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKAGLSVLLIEKN 34


>gi|228470392|ref|ZP_04055295.1| dihydrolipoyl dehydrogenase [Porphyromonas uenonis 60-3]
 gi|228307974|gb|EEK16857.1| dihydrolipoyl dehydrogenase [Porphyromonas uenonis 60-3]
          Length = 456

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD+I+IGGG AG  AA  AA+ G  T LI
Sbjct: 2  TYDLIIIGGGPAGYTAAERAARGGLDTLLI 31


>gi|291455718|ref|ZP_06595108.1| putative alkyl hydroperoxide reductase F subunit [Bifidobacterium
           breve DSM 20213]
 gi|291382646|gb|EFE90164.1| putative alkyl hydroperoxide reductase F subunit [Bifidobacterium
           breve DSM 20213]
          Length = 643

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YDV+VIGGG AG  A    A+      ++                GG     +  E+
Sbjct: 11  NNLYDVVVIGGGPAGLTAGLYLARARYRVLILE-----------KDDFGGQI--TITNEV 57

Query: 63  DALDGL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
               G+    GR       Q       +  +        D ++  +   R  +    + +
Sbjct: 58  VNYPGVGRTTGRALTQTMRQQAQGFGAEFLSAEATGLDVDGDIKTVHTLRGDIKTFGILI 117

Query: 120 ----------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
                      +GE          ++     D        V++  G F      +   K 
Sbjct: 118 ATGASPRKLGFEGEAE---YAGRGVAYCATCDGEFFAGKEVLVVGGGFAAAEESVFLTKY 174

Query: 170 PA 171
            +
Sbjct: 175 AS 176


>gi|118462272|ref|YP_882035.1| anthranilate dioxygenase reductase [Mycobacterium avium 104]
 gi|118163559|gb|ABK64456.1| anthranilate dioxygenase reductase [Mycobacterium avium 104]
          Length = 410

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+G G  G E AA A + G    ++              A+G    G +   +    G+ 
Sbjct: 151 VVGAGWIGLEVAAAARQRGVEVTVVE-----AARQPLTAALGETV-GEVFATLHREHGVD 204

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
            R+      Q R +    G A  G RT     +   A+   + ++ N+++ +        
Sbjct: 205 LRL----ETQVREITRADGSAT-GLRTTDGSAIPADAVLVAVGARPNIELAEAAGLSLAD 259

Query: 130 EKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              ++ +S+   D  +     +       LR  I        
Sbjct: 260 GGVLVDASLRTSDPDIYAVGDIAAAEHPLLRTRIRTEHWANA 301


>gi|89256681|ref|YP_514043.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica LVS]
 gi|115315091|ref|YP_763814.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502841|ref|YP_001428906.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010497|ref|ZP_02275428.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367991|ref|ZP_04984011.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica 257]
 gi|89144512|emb|CAJ79827.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica LVS]
 gi|115129990|gb|ABI83177.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253801|gb|EBA52895.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica 257]
 gi|156253444|gb|ABU61950.1| L-aspartate oxidase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 495

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + +DV +IG G AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHDVAIIGSGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIASSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKDDKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|126463254|ref|YP_001044368.1| hypothetical protein Rsph17029_2494 [Rhodobacter sphaeroides ATCC
          17029]
 gi|126104918|gb|ABN77596.1| HI0933 family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 392

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          D +VIGGG AG  AA   A+ G  T +   K S
Sbjct: 2  DALVIGGGPAGLMAAEELARAGLRTVICETKPS 34


>gi|332559303|ref|ZP_08413625.1| putative flavoprotein [Rhodobacter sphaeroides WS8N]
 gi|332277015|gb|EGJ22330.1| putative flavoprotein [Rhodobacter sphaeroides WS8N]
          Length = 392

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          D +VIGGG AG  AA   A+ G  T +   K S
Sbjct: 2  DALVIGGGPAGLMAAEELARAGLRTVICETKPS 34


>gi|297156021|gb|ADI05733.1| hypothetical protein SBI_02612 [Streptomyces bingchenggensis
          BCW-1]
          Length = 516

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           +D IV+G G  G  AAAV A+ G    +   
Sbjct: 11 EWDAIVVGSGLGGVSAAAVLARSGLKVLVCEQ 42


>gi|218260940|ref|ZP_03475990.1| hypothetical protein PRABACTJOHN_01654 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224288|gb|EEC96938.1| hypothetical protein PRABACTJOHN_01654 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLVRE 61
           DV ++GGG +G  AA   AK G   AL   K +       G+M  N  +       +VRE
Sbjct: 24  DVAIVGGGPSGIVAAYYLAKAGKKVALFDRKLAPGGGMWGGAMMFNDIVVQEEAMPIVRE 83

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +           DA    + + +V    A+    T+A   ++                  
Sbjct: 84  LGV------SYKDAGNGTYIMDSVHTTSALIYSATKAGATIFNCY--------------- 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA-GRMGDSPSN 180
             V       + ++ +V+    +IR        G  +  +  + K  +   G   +    
Sbjct: 123 -SVEDVVFHNDAVAGVVVNWAPVIR-------EGMHVDPLTIMSKAVLEGTGHDCEIARV 174

Query: 181 SLFNSFMKFDFDTGR 195
               + +K +  TG 
Sbjct: 175 VARKNDIKLNTPTGG 189


>gi|254481416|ref|ZP_05094661.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038579|gb|EEB79241.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 538

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 10/86 (11%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YD IVIG GH G   AA  AK G    ++            N  IGG      + E
Sbjct: 1  MKSKYDAIVIGAGHNGLTNAAYLAKSGLDVLVVE----------KNDYIGGAAVSRELHE 50

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
                     +       R LN+ +
Sbjct: 51 GWLYSNCSYVCSLLRQSIHRDLNLTR 76


>gi|149203996|ref|ZP_01880964.1| N-methylproline demethylase, putative [Roseovarius sp. TM1035]
 gi|149142438|gb|EDM30483.1| N-methylproline demethylase, putative [Roseovarius sp. TM1035]
          Length = 681

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIVGAGPAGLEAARVAAERGHDVTVFEAQPD 420


>gi|115360248|ref|YP_777386.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ambifaria AMMD]
 gi|115285536|gb|ABI91052.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Burkholderia ambifaria AMMD]
          Length = 406

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 22/168 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG  G E AA A + G    +I                       L R +  + G
Sbjct: 148 VAVLGGGFIGLEVAAAARQRGCDVTVI-----------------DPAPRLLQRALPEVVG 190

Query: 68  LMGR-VADAAGIQFRV---LNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVIQG 122
              R + DA G++F++    +  +  A  G   + DR ++    +   I    N+++ Q 
Sbjct: 191 AYARQLHDAHGVKFQMTTLPSAIRRAAGGGAIVETDRGDVPADIVVVGIGVVPNVELAQA 250

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                +    + +     D+++     V +     L   + I   ++ 
Sbjct: 251 AGLEVDNGIRVDAGCRTADHAIFAAGEVTMHFNPLLGRHVRIESWQVA 298


>gi|327438802|dbj|BAK15167.1| thioredoxin reductase [Solibacillus silvestris StLB046]
          Length = 314

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA  A++   ST +I
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYASRANLSTLMI 35


>gi|326797305|ref|YP_004315125.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Marinomonas mediterranea MMB-1]
 gi|326548069|gb|ADZ93289.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Marinomonas mediterranea MMB-1]
          Length = 410

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 28/169 (16%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N +YDV++IG G AG        K G S   I              ++ G   G ++ ++
Sbjct: 4   NANYDVVIIGSGPAGSLCGIECRKKGLSVLCIE--KDEFPRFHIGESLTGNA-GQIITDL 60

Query: 63  DALDGLMGRVAD------------AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
              D      A+             +  +F +  + K    +  R+  D+ L   A++  
Sbjct: 61  GLYD--KMEEAEFPNKLGVNVIGSLSKNEFFIPILAKT--WQVRRSSFDKMLKEKALEHG 116

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSI--VMQDNSM-IRCSTVVLTTGT 156
           +  Q       G V     +   +          S  +    +V  +G 
Sbjct: 117 VEYQ------TGMVTDVLRDGEKVVGATYKTAAGSQNVNSKVLVDASGQ 159


>gi|294994196|ref|ZP_06799887.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          tuberculosis 210]
          Length = 102

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A++
Sbjct: 5  REYDIVVIGSGPGGQKAAIASAKLGKSVAIV 35


>gi|254874089|ref|ZP_05246799.1| sdhA, succinate dehydrogenase, catalytic and NAD/flavoprotein
          subunit [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254840088|gb|EET18524.1| sdhA, succinate dehydrogenase, catalytic and NAD/flavoprotein
          subunit [Francisella tularensis subsp. tularensis
          MA00-2987]
          Length = 509

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|241667758|ref|ZP_04755336.1| succinate dehydrogenase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254876302|ref|ZP_05249012.1| succinate dehydrogenase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254842323|gb|EET20737.1| succinate dehydrogenase [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|257055898|ref|YP_003133730.1| sarcosine oxidase, beta subunit family, heterotetrameric form
           [Saccharomonospora viridis DSM 43017]
 gi|256585770|gb|ACU96903.1| sarcosine oxidase, beta subunit family, heterotetrameric form
           [Saccharomonospora viridis DSM 43017]
          Length = 412

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  Y        + Q  +D+IQ  EV GF    + ++ +       I C 
Sbjct: 169 ATYQPRAGIAKHDYVAWGFARRIDQAGIDLIQDCEVTGFTVIGDRVTGVRTTRGD-IGCG 227

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
           TV L        ++    ++     +   P  +L +  ++
Sbjct: 228 TVALCAAGHTSVLLDKLGVRA---PLQSHPLQALVSELLE 264


>gi|229020367|ref|ZP_04177124.1| Thioredoxin reductase [Bacillus cereus AH1273]
 gi|229026595|ref|ZP_04182940.1| Thioredoxin reductase [Bacillus cereus AH1272]
 gi|228734710|gb|EEL85359.1| Thioredoxin reductase [Bacillus cereus AH1272]
 gi|228740929|gb|EEL91170.1| Thioredoxin reductase [Bacillus cereus AH1273]
          Length = 323

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 9  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 40


>gi|208780225|ref|ZP_03247567.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          novicida FTG]
 gi|208743874|gb|EDZ90176.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          novicida FTG]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|126668313|ref|ZP_01739272.1| dihydrolipoamide dehydrogenase [Marinobacter sp. ELB17]
 gi|126627230|gb|EAZ97868.1| dihydrolipoamide dehydrogenase [Marinobacter sp. ELB17]
          Length = 479

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIVIG G  G  AA  AA+LG + A +
Sbjct: 1  MADKFDVIVIGAGPGGYVAAIKAAQLGLNVACV 33


>gi|85705377|ref|ZP_01036476.1| N-methylproline demethylase, putative [Roseovarius sp. 217]
 gi|85670250|gb|EAQ25112.1| N-methylproline demethylase, putative [Roseovarius sp. 217]
          Length = 681

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIVGAGPAGLEAARVAAERGHDVTVFEAQPD 420


>gi|332654877|ref|ZP_08420619.1| thioredoxin-disulfide reductase [Ruminococcaceae bacterium D16]
 gi|332516220|gb|EGJ45828.1| thioredoxin-disulfide reductase [Ruminococcaceae bacterium D16]
          Length = 300

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+    DVIV+GGG AG  A    A+ G S  ++
Sbjct: 1  MMT---DVIVVGGGPAGLTAGLYLARAGRSVLVL 31


>gi|312796202|ref|YP_004029124.1| dihydrolipoamide dehydrogenase [Burkholderia rhizoxinica HKI 454]
 gi|312167977|emb|CBW74980.1| Dihydrolipoamide dehydrogenase (EC 1.8.1.4) [Burkholderia
          rhizoxinica HKI 454]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + +DV+VIG G  G  AA  AA+LG S A I
Sbjct: 1  MAKEFDVVVIGAGPGGYIAAIRAAQLGKSVACI 33


>gi|297199517|ref|ZP_06916914.1| nitrite reductase large subunit [Streptomyces sviceus ATCC 29083]
 gi|197712936|gb|EDY56970.1| nitrite reductase large subunit [Streptomyces sviceus ATCC 29083]
          Length = 403

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 31/132 (23%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL---------- 58
           +VIGGG  G  AA   A+ GA   L   ++  +     +P+   L + HL          
Sbjct: 145 VVIGGGLLGVSAARALAQRGAQVIL-AQQSERLMERQLDPSASKLVRRHLGDLGVEVHTD 203

Query: 59  --VREIDALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
             VR++  + G +    +AD   +   ++ +  G   R    Q                 
Sbjct: 204 LRVRDVRCVGGAVRSVEMADGYALDAEIVVLACGVHPRVGLAQ----------------T 247

Query: 115 ENLDVIQGEVAG 126
             L+V +G V  
Sbjct: 248 AGLEVRKGIVVD 259


>gi|218246684|ref|YP_002372055.1| succinate dehydrogenase flavoprotein subunit [Cyanothece sp. PCC
          8801]
 gi|257059726|ref|YP_003137614.1| succinate dehydrogenase flavoprotein subunit [Cyanothece sp. PCC
          8802]
 gi|218167162|gb|ACK65899.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 8801]
 gi|256589892|gb|ACV00779.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 8802]
          Length = 575

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKL 27
           +DVI+IGGG AGC AA    +L
Sbjct: 3  QHDVIIIGGGLAGCRAALEIKRL 25


>gi|15679712|ref|NP_276830.1| bacteriochlorophyll synthase 43 kDa subunit [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622850|gb|AAB86190.1| bacteriochlorophyll synthase 43 kDa subunit [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 381

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          +VIGG  AG  AA  AA+LG S  L+         + C
Sbjct: 2  VVIGGRVAGSTAAYHAARLGLSVLLLERNPEIGTPVQC 39


>gi|85703652|ref|ZP_01034756.1| phytoene dehydrogenase [Roseovarius sp. 217]
 gi|85672580|gb|EAQ27437.1| phytoene dehydrogenase [Roseovarius sp. 217]
          Length = 530

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           R++D IVIGGG  G  AA V A+ G S  L+
Sbjct: 15 TRTFDAIVIGGGLNGLAAAGVLARAGQSVCLL 46


>gi|332678933|gb|AEE88062.1| Succinate dehydrogenase flavoprotein subunit [Francisella cf.
          novicida Fx1]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|294626029|ref|ZP_06704639.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599699|gb|EFF43826.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 393

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFISANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNS 143
             ++     ++   + + ++   
Sbjct: 108 SKQIVRMLLDECDAAGVQIRTQC 130


>gi|307731107|ref|YP_003908331.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. CCGE1003]
 gi|307585642|gb|ADN59040.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. CCGE1003]
          Length = 390

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          ++++D  VIGGG  G  AA    + G   AL+          +C P   G  
Sbjct: 5  HQTFDAAVIGGGLVGKTAALALTQAGLRVALLAQ--------ACAPLPAGAS 48


>gi|254487688|ref|ZP_05100893.1| rhodocoxin reductase [Roseobacter sp. GAI101]
 gi|214044557|gb|EEB85195.1| rhodocoxin reductase [Roseobacter sp. GAI101]
          Length = 402

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLV 59
           V+++GGG+ G EAA+VAAKLG +  L+         + +   +     L K H V
Sbjct: 146 VLIVGGGYIGLEAASVAAKLGLNVTLVEMGDRILQRVAAPQTSDFFRNLHKSHGV 200


>gi|169335910|ref|ZP_02863103.1| hypothetical protein ANASTE_02345 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258648|gb|EDS72614.1| hypothetical protein ANASTE_02345 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 389

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVI+IGGG AG  AA  A +    T +I
Sbjct: 1  MKDMYDVIIIGGGPAGLSAAIYAGRAERKTLVI 33


>gi|150391327|ref|YP_001321376.1| thioredoxin reductase [Alkaliphilus metalliredigens QYMF]
 gi|149951189|gb|ABR49717.1| thioredoxin reductase [Alkaliphilus metalliredigens QYMF]
          Length = 315

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDV++IGGG AG  A   AA+ G  T LI  K  T G ++    +           
Sbjct: 1  MENVYDVVIIGGGPAGLSAGLYAAR-GKMTTLILEKEKTGGQIATTEEVANYPGSITDAT 59

Query: 62 IDALDGLMGRVADAAGIQFR 81
            AL   M    +  G +  
Sbjct: 60 GPALVARMVEQCNEFGAKIE 79


>gi|52143033|ref|YP_083796.1| phytoene dehydrogenase related enzyme [Bacillus cereus E33L]
 gi|51976502|gb|AAU18052.1| possible phytoene dehydrogenase related enzyme [Bacillus cereus
          E33L]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +D+ ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KKFDIAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|332184745|gb|AEE26999.1| Succinate dehydrogenase flavoprotein subunit [Francisella cf.
          novicida 3523]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|327454201|gb|EGF00856.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL087PA3]
 gi|328755958|gb|EGF69574.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL087PA1]
          Length = 350

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 41/171 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVI++G G AG  AA   A+ G    +        G++     +          E 
Sbjct: 41  DEPRDVIIVGSGPAGYTAAVYTARAGLKPLVFEGSMDAGGALMQTTEVENY---PGFSEG 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                LM ++                      R QA+R                 ++I  
Sbjct: 98  IMGPDLMAQM----------------------RAQAERF--------------GAELIAD 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +V   +     I  +V  D +  +   V+L  G+  R  + +      +GR
Sbjct: 122 DVTDIDLTG-EIKKLVDTDGNTYKAHVVILAMGSAYR-KLGLQDEPRLSGR 170


>gi|318041067|ref|ZP_07973023.1| putative FAD-dependent dehydrogenase [Synechococcus sp. CB0101]
          Length = 560

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 57/183 (31%), Gaps = 42/183 (22%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMS--------CNPAIGGL 53
           +V+G G  G   A + A++G    L+            T G            N   G  
Sbjct: 104 VVVGAGPCGYFCALLLAQMGLKPLLLERGKPVKERSADTFGFWQGKRPFNPESNAQFGEG 163

Query: 54  GKGHL--------VREIDALDGLMGRVADAAGIQFRVLNVKK--------GPAVRGPRTQ 97
           G G          VR+   L   +     AAG    +L + +           VRG R Q
Sbjct: 164 GAGTFSDGKLYSQVRDPRHLGRKVLEELVAAGANPEILVLHRPHIGTFKLATVVRGLRAQ 223

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
                   A+  EI  +  +D         N   + +  + + D S I    VV+  G  
Sbjct: 224 I------RALGGEIRFESRVD-----RLELNPNDHAVRGVTLADGSFIPARQVVMAVGHS 272

Query: 158 LRG 160
            R 
Sbjct: 273 ARD 275


>gi|256848098|ref|ZP_05553542.1| thioredoxin-disulfide reductase [Lactobacillus coleohominis
          101-4-CHN]
 gi|256715158|gb|EEU30135.1| thioredoxin-disulfide reductase [Lactobacillus coleohominis
          101-4-CHN]
          Length = 312

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IG G AG   A  A++   S  ++
Sbjct: 8  NYDVIIIGAGPAGMTTALYASRANLSVLML 37


>gi|254775325|ref|ZP_05216841.1| anthranilate dioxygenase reductase [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 410

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+G G  G E AA A + G    ++              A+G    G +   +    G+ 
Sbjct: 151 VVGAGWIGLEVAAAARQRGVEVTVVE-----AARQPLTAALGETV-GEVFATLHREHGVD 204

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
            R+      Q R +    G A  G RT     +   A+   + ++ N+++ +        
Sbjct: 205 LRL----ETQVREITRADGSAT-GLRTTDGSAIPADAVLVAVGARPNIELAEAAGLSLAD 259

Query: 130 EKNII-SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              ++ +S+   D  +     +       LR  I        
Sbjct: 260 GGVLVDASLRTSDPDIYAVGDIAAAEHPLLRTRIRTEHWANA 301


>gi|229087633|ref|ZP_04219762.1| Thioredoxin reductase [Bacillus cereus Rock3-44]
 gi|228695674|gb|EEL48530.1| Thioredoxin reductase [Bacillus cereus Rock3-44]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|229169859|ref|ZP_04297555.1| Thioredoxin reductase [Bacillus cereus AH621]
 gi|228613573|gb|EEK70702.1| Thioredoxin reductase [Bacillus cereus AH621]
          Length = 323

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 9  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 40


>gi|187932805|ref|YP_001886171.1| 2-enoate reductase [Clostridium botulinum B str. Eklund 17B]
 gi|187720958|gb|ACD22179.1| 2-enoate reductase [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+VIGGG AGCE A + A  G   +L   KT  +G
Sbjct: 408 VMVIGGGVAGCEVARICAIRGHKVSLYE-KTDKLG 441


>gi|168183115|ref|ZP_02617779.1| thioredoxin-disulfide reductase [Clostridium botulinum Bf]
 gi|237794545|ref|YP_002862097.1| thioredoxin-disulfide reductase [Clostridium botulinum Ba4 str.
          657]
 gi|182673866|gb|EDT85827.1| thioredoxin-disulfide reductase [Clostridium botulinum Bf]
 gi|229262528|gb|ACQ53561.1| thioredoxin-disulfide reductase [Clostridium botulinum Ba4 str.
          657]
          Length = 313

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N  YD+I+IG G AG  A   AA+    T ++    +  G +     +           
Sbjct: 1  MNNVYDLIIIGSGPAGLSAGLYAARARLKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    D  G + +  NVK+
Sbjct: 60 GASLVARMEEQVDEFGAERKKDNVKE 85


>gi|167748872|ref|ZP_02420999.1| hypothetical protein ANACAC_03646 [Anaerostipes caccae DSM 14662]
 gi|167651842|gb|EDR95971.1| hypothetical protein ANACAC_03646 [Anaerostipes caccae DSM 14662]
          Length = 406

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 125/422 (29%), Gaps = 72/422 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +VIV+GGG AG  AA  +A  G    L          +     I G G+ +L    D  D
Sbjct: 3   EVIVVGGGAAGMIAAICSAGEGNRVTL----LEKNEKLGKKLFITGKGRCNLTNAGDIED 58

Query: 67  GL---------------------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
            +                     M    +  G   +V    +   V    +   R + R 
Sbjct: 59  LMGHVVTNREFLYSAFYSFTNEQMMEWMEQWGCPVKVERGNRVFPVSDKSSDVIRAMERE 118

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             +R++  + N +V Q       TE   +S + +     ++   VV+ TG          
Sbjct: 119 LGKRKVSVKLNTEVRQ-----ILTENGSVSGVEINGGRKLKADKVVIATGGVSYPSTGST 173

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL----DGKTIIWDKTEKQFADE 221
                  +        L  + + F+ D           L            +  K+F + 
Sbjct: 174 GDGHSFAKKTGHKVTHLDPALVPFNIDGTVCSRLQGLSLKNVEASLYADGKRIYKEFGEM 233

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE-- 279
               F      I        +     +    I      S            +   + E  
Sbjct: 234 LFTHFGISGP-IIISASSYAVRYKGKQLKFCIDLKPALSEEQLDQRILKDFQKNINKEFK 292

Query: 280 DKIVRFGERNGHQIFLE----PEGLNTDVV------YPNGISTALPEEIQHQFIRTIPGL 329
           + + +   +    + LE    PE      +          +  A+P       + +  G 
Sbjct: 293 NSLGKLLPKKMIPVILELSGIPEDKKVHEITKDERRNLTALLKAMPL-----MVTSTRGF 347

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTGY 375
           ++  I   G  ++   INP     T+E+KK+ GL+ AG              QI  +TGY
Sbjct: 348 KEAIITHGGVDVKE--INP----STMESKKVQGLYFAGEVLDLDALTGGYNLQIAWSTGY 401

Query: 376 EE 377
             
Sbjct: 402 LA 403


>gi|254375007|ref|ZP_04990487.1| succinate dehydrogenase [Francisella novicida GA99-3548]
 gi|151572725|gb|EDN38379.1| succinate dehydrogenase [Francisella novicida GA99-3548]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|149914173|ref|ZP_01902704.1| N-methylproline demethylase, putative [Roseobacter sp. AzwK-3b]
 gi|149811692|gb|EDM71525.1| N-methylproline demethylase, putative [Roseobacter sp. AzwK-3b]
          Length = 681

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIVGAGPAGLEAARVAAERGHDVTVFEAQPD 420


>gi|49187993|ref|YP_031246.1| thioredoxin reductase [Bacillus anthracis str. Sterne]
 gi|49480378|ref|YP_039145.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|52140407|ref|YP_086422.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus cereus E33L]
 gi|118480194|ref|YP_897345.1| thioredoxin-disulfide reductase [Bacillus thuringiensis str. Al
          Hakam]
 gi|301056617|ref|YP_003794828.1| thioredoxin-disulfide reductase [Bacillus anthracis CI]
 gi|49181920|gb|AAT57296.1| thioredoxin reductase [Bacillus anthracis str. Sterne]
 gi|49331934|gb|AAT62580.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973876|gb|AAU15426.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus cereus E33L]
 gi|118419419|gb|ABK87838.1| thioredoxin-disulfide reductase [Bacillus thuringiensis str. Al
          Hakam]
 gi|300378786|gb|ADK07690.1| thioredoxin-disulfide reductase [Bacillus cereus biovar anthracis
          str. CI]
          Length = 321

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 7  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 38


>gi|89257049|ref|YP_514411.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. holarctica LVS]
 gi|115315404|ref|YP_764127.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
          OSU18]
 gi|167009435|ref|ZP_02274366.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
          FSC200]
 gi|254368290|ref|ZP_04984309.1| succinate dehydrogenase catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. holarctica 257]
 gi|254369886|ref|ZP_04985895.1| hypothetical protein FTAG_01647 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|89144880|emb|CAJ80225.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. holarctica LVS]
 gi|115130303|gb|ABI83490.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134254099|gb|EBA53193.1| succinate dehydrogenase catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. holarctica 257]
 gi|157122856|gb|EDO66973.1| hypothetical protein FTAG_01647 [Francisella tularensis subsp.
          holarctica FSC022]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|33865631|ref|NP_897190.1| geranylgeranyl hydrogenase [Synechococcus sp. WH 8102]
 gi|33632801|emb|CAE07612.1| geranylgeranyl hydrogenase [Synechococcus sp. WH 8102]
          Length = 450

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  D 
Sbjct: 4   VAVIGGGPSGSCAAEILAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPDD 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILS 113
               + D      ++++       ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNREVDIKLDPLGYDDNAYIGMCRREVFD 100


>gi|55822999|ref|YP_141440.1| acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus CNRZ1066]
 gi|116627817|ref|YP_820436.1| acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus LMD-9]
 gi|55738984|gb|AAV62625.1| acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus CNRZ1066]
 gi|116101094|gb|ABJ66240.1| dihydrolipoamide dehydrogenase [Streptococcus thermophilus LMD-9]
 gi|312278378|gb|ADQ63035.1| Acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus ND03]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD++V+GGG AG  AA   A+LG   A++
Sbjct: 123 LADNEYDIVVVGGGPAGYYAAIRGAQLGGKVAIV 156


>gi|325989767|ref|YP_004249466.1| thioredoxin reductase [Mycoplasma suis KI3806]
 gi|323574852|emb|CBZ40512.1| Thioredoxin reductase [Mycoplasma suis]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +R +DVI+IG G AG  AA   A+   +  ++
Sbjct: 1  MSDRIWDVIIIGSGPAGATAAIYCARSCLNVLIL 34


>gi|312129476|ref|YP_003996816.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Leadbetterella byssophila DSM 17132]
 gi|311906022|gb|ADQ16463.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Leadbetterella byssophila DSM 17132]
          Length = 526

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 73/251 (29%), Gaps = 44/251 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGLG 54
           I+IG G AG  AA    +L                   L       I +   N   G  G
Sbjct: 83  IIIGAGPAGLFAALRCLELQIQPIILERGKDVRARRRDLAAINKEHIVNPDSNYCFGEGG 142

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQR--- 109
            G         DG +   +   G   R+L   VK G   R            +   +   
Sbjct: 143 AGT------YSDGKLYTRSKKRGDIRRILEIFVKHGATERILV----ETHPHIGTNKLPV 192

Query: 110 EILSQENLDVIQGE--------VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            I +  N  ++Q          V  F  E   I  ++ Q +   +   V+L TG   R +
Sbjct: 193 VIENIRN-TILQNSGEIHFDTKVTDFLFENGQIKGVISQGDKTWQADGVILATGHSARDI 251

Query: 162 IHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221
             +   K   G   ++   +L              +  TP R       +    +Q   E
Sbjct: 252 FELLHQK---GLALENKPFALGVRVEHAQKFVDSCQYHTPQRGLLPAAAYS-LVEQTNFE 307

Query: 222 RLI--PFSFMT 230
            +    FSF  
Sbjct: 308 GVQRGVFSFCM 318


>gi|301763186|ref|XP_002917014.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2-like [Ailuropoda
          melanoleuca]
          Length = 581

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD +VIG GH G  AAA   +LG +TA+              P IGG  
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE----------RRPVIGGAA 73


>gi|281348491|gb|EFB24075.1| hypothetical protein PANDA_005176 [Ailuropoda melanoleuca]
          Length = 559

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD +VIG GH G  AAA   +LG +TA+              P IGG  
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE----------RRPVIGGAA 73


>gi|323527465|ref|YP_004229618.1| Ubiquinone biosynthesis hydroxylase [Burkholderia sp. CCGE1001]
 gi|323384467|gb|ADX56558.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Burkholderia sp. CCGE1001]
          Length = 390

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA----IGGLGKGHL 58
           ++++D  VIGGG  G  AA    + G   AL+    + + + +   +    +    +  L
Sbjct: 5   HQTFDAAVIGGGLVGKTAALALTQAGLRVALLAQACAPLAASASFDSRVYALSSSSQALL 64

Query: 59  VREIDALDGL----MGRVADA--AGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREI 111
            R +     L    +G V D    G     L+     A V       +  +   A+   +
Sbjct: 65  ER-LRVWQALDLARLGPVYDMRVYGDAHAELHFSAFQASVPQLAWIVESSVIERALDAAL 123

Query: 112 LSQENLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
             Q NL  I  + +   F  +    +S+ + + S++    VV   G  
Sbjct: 124 RFQPNLTWIDSRAQALDFTADS---ASVGLANGSVLVADLVVGADGAH 168


>gi|229014316|ref|ZP_04171435.1| Thioredoxin reductase [Bacillus mycoides DSM 2048]
 gi|228746916|gb|EEL96800.1| Thioredoxin reductase [Bacillus mycoides DSM 2048]
          Length = 323

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 9  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 40


>gi|229063804|ref|ZP_04200108.1| Thioredoxin reductase [Bacillus cereus AH603]
 gi|228716441|gb|EEL68145.1| Thioredoxin reductase [Bacillus cereus AH603]
          Length = 323

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 9  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 40


>gi|229158721|ref|ZP_04286779.1| Thioredoxin reductase [Bacillus cereus ATCC 4342]
 gi|228624705|gb|EEK81474.1| Thioredoxin reductase [Bacillus cereus ATCC 4342]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|229175825|ref|ZP_04303324.1| Thioredoxin reductase [Bacillus cereus MM3]
 gi|228607646|gb|EEK64969.1| Thioredoxin reductase [Bacillus cereus MM3]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|255069927|ref|XP_002507045.1| predicted protein [Micromonas sp. RCC299]
 gi|226522320|gb|ACO68303.1| predicted protein [Micromonas sp. RCC299]
          Length = 693

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +  YDV+VIG G  G  AA++ A+ G S  L    
Sbjct: 81  DEEYDVVVIGSGIGGLSAASLLARYGYSVKLFESH 115


>gi|254482287|ref|ZP_05095528.1| glutathione-disulfide reductase [marine gamma proteobacterium
          HTCC2148]
 gi|214037612|gb|EEB78278.1| glutathione-disulfide reductase [marine gamma proteobacterium
          HTCC2148]
          Length = 452

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M ++ YD+ VIG G  G  AA +AA  GA  A+
Sbjct: 1  MSDKDYDLFVIGAGSGGVRAARMAAGFGARVAV 33


>gi|191637249|ref|YP_001986415.1| hypothetical protein LCABL_04310 [Lactobacillus casei BL23]
 gi|190711551|emb|CAQ65557.1| HI0933 family protein precursor [Lactobacillus casei BL23]
 gi|327381289|gb|AEA52765.1| FAD dependent oxidoreductase [Lactobacillus casei LC2W]
 gi|327384460|gb|AEA55934.1| FAD dependent oxidoreductase [Lactobacillus casei BD-II]
          Length = 425

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          ++D+IVIGGG AG  AA  AA      A++            N  + GL + +
Sbjct: 2  NFDLIVIGGGTAGVLAAIKAASKKVKVAIVEQH----SVCGGNATLSGLAEFN 50


>gi|187931030|ref|YP_001891014.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. mediasiatica FSC147]
 gi|187711939|gb|ACD30236.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. mediasiatica FSC147]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|156503258|ref|YP_001429323.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|290953667|ref|ZP_06558288.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. holarctica URFT1]
 gi|295312984|ref|ZP_06803693.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. holarctica URFT1]
 gi|156253861|gb|ABU62367.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. holarctica FTNF002-00]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|156231016|ref|NP_001035093.2| retinol saturase-like [Danio rerio]
          Length = 604

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DVIVIG G  G  AAAV A+LG    ++   
Sbjct: 65 DVIVIGSGIGGLTAAAVLARLGKKVLVLEQD 95


>gi|169154572|emb|CAQ14578.1| novel protein similar to retinol saturase (all-trans-retinol
          13,14-reductase) (retsat, zgc:123334) [Danio rerio]
          Length = 604

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DVIVIG G  G  AAAV A+LG    ++   
Sbjct: 65 DVIVIGSGIGGLTAAAVLARLGKKVLVLEQD 95


>gi|56707253|ref|YP_169149.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669723|ref|YP_666280.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. tularensis FSC198]
 gi|118498199|ref|YP_899249.1| succinate dehydrogenase flavoprotein [Francisella tularensis
          subsp. novicida U112]
 gi|134301288|ref|YP_001121256.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. tularensis WY96-3418]
 gi|194324381|ref|ZP_03058154.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. novicida FTE]
 gi|254369937|ref|ZP_04985945.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254373543|ref|ZP_04989030.1| succinate dehydrogenase [Francisella tularensis subsp. novicida
          GA99-3549]
 gi|56603745|emb|CAG44707.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320056|emb|CAL08090.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Francisella tularensis subsp. tularensis FSC198]
 gi|118424105|gb|ABK90495.1| succinate dehydrogenase flavoprotein [Francisella novicida U112]
 gi|134049065|gb|ABO46136.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. tularensis WY96-3418]
 gi|151568183|gb|EDN33837.1| hypothetical protein FTBG_01529 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|151571268|gb|EDN36922.1| succinate dehydrogenase [Francisella novicida GA99-3549]
 gi|194321446|gb|EDX18931.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. novicida FTE]
 gi|282158362|gb|ADA77753.1| succinate dehydrogenase, flavoprotein subunit [Francisella
          tularensis subsp. tularensis NE061598]
          Length = 597

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQEFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|289178479|gb|ADC85725.1| Dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis BB-12]
          Length = 507

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV++IG G  G   A  +A+LG S  L+
Sbjct: 15 MTSEHYDVVIIGAGPGGYTVALRSAELGKSVLLV 48


>gi|195978328|ref|YP_002123572.1| dihydrolipoyl dehydrogenase LpdA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975033|gb|ACG62559.1| dihydrolipoyl dehydrogenase LpdA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 589

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 130 EYDIIVVGGGPAGYYAAIRGAQLGGKVAIV 159


>gi|183601761|ref|ZP_02963131.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis HN019]
 gi|219683709|ref|YP_002470092.1| dihydrolipoyl dehydrogenase [Bifidobacterium animalis subsp.
          lactis AD011]
 gi|241190741|ref|YP_002968135.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|241196147|ref|YP_002969702.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|183219367|gb|EDT90008.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis HN019]
 gi|219621359|gb|ACL29516.1| dihydrolipoyl dehydrogenase [Bifidobacterium animalis subsp.
          lactis AD011]
 gi|240249133|gb|ACS46073.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|240250701|gb|ACS47640.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|295793730|gb|ADG33265.1| dihydrolipoamide dehydrogenase [Bifidobacterium animalis subsp.
          lactis V9]
          Length = 493

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV++IG G  G   A  +A+LG S  L+
Sbjct: 1  MTSEHYDVVIIGAGPGGYTVALRSAELGKSVLLV 34


>gi|240140349|ref|YP_002964828.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
           extorquens AM1]
 gi|27902658|gb|AAO24621.1| succinate dehydrogenase alpha subunit [Methylobacterium extorquens]
 gi|240010325|gb|ACS41551.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
           extorquens AM1]
          Length = 605

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 60/225 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLG- 54
           +I+ ++DV+++G G AG  A    ++ G  TA IT     ++ T+ +    + ++G +G 
Sbjct: 15  IIDHTFDVVIVGAGGAGLRATVGCSQAGLRTACITKVFPTRSHTVAAQGGISASLGNMGP 74

Query: 55  -----------KGH------------------LVREIDALDGLMGRVADAAGIQFRVL-- 83
                      KG                    V E++       R  D   I  R    
Sbjct: 75  DDWRWHMYDTVKGSDWLGDQDAIEYLVRNAPAAVYELEHWGVPFSR-TDEGKIYQRPFGG 133

Query: 84  ---NVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFN-TEKN 132
              +  KG A R     ADR        LY  A++ +         I+         E  
Sbjct: 134 MTTDYGKGTAQRTCAA-ADRTGHAMLHTLYGQAVKNKTQ-----FFIEYFALDLIMDEDG 187

Query: 133 IISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               ++       +    R    +L TG + R            G
Sbjct: 188 RCRGVLAIDQATGEIHRFRAQQTILATGGYGRAYFSATSAHTCTG 232


>gi|15029325|gb|AAK81830.1| non-heme halogenase [Streptomyces lavendulae]
          Length = 497

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 57/175 (32%), Gaps = 20/175 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV V+GGG AG   AA+ AK G    ++              ++       + R 
Sbjct: 4   VTEEFDVAVVGGGPAGSTFAALVAKQGHRVVVLE--KENFPRYQIGESLLPSTIHGVCRL 61

Query: 62  IDALDGLM---------GRVADAAGIQFRVLNVKKGPAVRGP---RTQADRELYRLAMQR 109
             A D L          G     A  +         P + GP     Q +R  +   + +
Sbjct: 62  SGAADDLAKAGFPLKRGGTFRWGARPEPWTFAFSVSPRMAGPTSVAYQVERSKFDDILLK 121

Query: 110 EILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDN--SMIRCSTVVLTTGTFLR 159
               Q   DV +G  V G   E   +  +     D     IR   VV  +G   R
Sbjct: 122 NARKQ-GADVREGCSVRGVIEEGERVRGLTYADADGNEREIRARYVVDASGNKSR 175


>gi|27377744|ref|NP_769273.1| hypothetical protein bll2633 [Bradyrhizobium japonicum USDA 110]
 gi|27350889|dbj|BAC47898.1| bll2633 [Bradyrhizobium japonicum USDA 110]
          Length = 447

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 9/139 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+G G AG  AA   A+ G    L+    +  G      +I G   G      D   
Sbjct: 40  DICVVGSGAAGMSAAIEGARAGRKVVLVDSLPALGGQAV--NSIIGTFCGLFSNGSDGYQ 97

Query: 67  GLMGRVADAAGI---QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G   D  G    Q   L  ++GP         D       +++ +L+   + VI G 
Sbjct: 98  FTHGIADDLLGDLGAQENALFYRRGP--HTTVVYYDEVALGRWVEKAMLA-AGVTVIVGA 154

Query: 124 VA-GFNTEKNIISSIVMQD 141
           V          ++ I +  
Sbjct: 155 VMRNVRVAGRRVTGIDLST 173


>gi|325526456|gb|EGD04037.1| dihydrolipoamide dehydrogenase [Burkholderia sp. TJI49]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|320333117|ref|YP_004169828.1| dihydrolipoamide dehydrogenase [Deinococcus maricopensis DSM
          21211]
 gi|319754406|gb|ADV66163.1| dihydrolipoamide dehydrogenase [Deinococcus maricopensis DSM
          21211]
          Length = 462

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +DV+VIG G  G  AA  AA+LG   A        +G
Sbjct: 2  DFDVLVIGAGPGGYHAAIRAAQLGLKVACAEM--DKVG 37


>gi|307596110|ref|YP_003902427.1| chromosome segregation ATPase-like protein [Vulcanisaeta distributa
           DSM 14429]
 gi|307551311|gb|ADN51376.1| chromosome segregation ATPase-like protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 485

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 21/159 (13%)

Query: 438 RPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFK- 496
           R D  + RL     +L    +  ++R  +  +    L+ L + L    + L+      K 
Sbjct: 286 RIDAENARL----RELEKREQEIKERLEQLARREAELKELERKLNERQEMLNKLEAELKD 341

Query: 497 QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEI 556
           ++G+  +    L   +     L  +  +  K       R ++         + + E K +
Sbjct: 342 KEGRLNSLENLLKERE---DTLKKLDEEINK------RRRELLDKLEPLITKLVEEEKRL 392

Query: 557 KFEEKRLIPKD---FDYSSLPALSN----ELKEKLSILK 588
              EKRL+ K+    +Y     +      EL+EKL   +
Sbjct: 393 TDWEKRLLDKERELMNYQRALIIRENTLVELREKLDRER 431


>gi|295676271|ref|YP_003604795.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1002]
 gi|295436114|gb|ADG15284.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1002]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|290960707|ref|YP_003491889.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260650233|emb|CBG73349.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 578

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +YDV+V+G G AG  AA  AAK G S  ++             P  GG  
Sbjct: 32 TYDVVVVGSGAAGMTAALTAAKQGLSCVVVE----------KAPTFGGSA 71


>gi|226364762|ref|YP_002782544.1| monooxygenase [Rhodococcus opacus B4]
 gi|226243251|dbj|BAH53599.1| putative monooxygenase [Rhodococcus opacus B4]
          Length = 534

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 20/192 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKL----GASTALITHKTSTIG---SMSCNPAIGGL 53
           M + ++DV+++G G  G        ++    G   A++           ++  +  IG +
Sbjct: 1   MQDNTHDVVIVGAGPVG----LALGRMLGLRGHDVAILERWPEPYPLPRAVHFDDEIGRV 56

Query: 54  GKG-HLVREIDALDGL---MGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQ 108
            +  +L  EI A+           +AAG     ++    GP+     +   +      + 
Sbjct: 57  FQSMNLADEIRAISEAVPDCYEWRNAAGESLVKIDWSGTGPSGWPTASFFSQPQLEKVLG 116

Query: 109 REILSQENLDVIQG-EVAGFNTEKNIISSIVMQD---NSMIRCSTVVLTTGTFLRGVIHI 164
             +    N+ +++G EV G +   + +             +    V+   G        +
Sbjct: 117 AAVEEMPNVTLLRGAEVVGIDERADDVEVTFTSTVVKQRRMSARFVIGCDGANSFVRQRM 176

Query: 165 GKLKIPAGRMGD 176
                  G   D
Sbjct: 177 DATMHDQGFFFD 188


>gi|221197769|ref|ZP_03570815.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD2M]
 gi|221204673|ref|ZP_03577690.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD2]
 gi|221175530|gb|EEE07960.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD2]
 gi|221181701|gb|EEE14102.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD2M]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|221213150|ref|ZP_03586126.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD1]
 gi|221167363|gb|EED99833.1| dihydrolipoyl dehydrogenase [Burkholderia multivorans CGD1]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|209520206|ref|ZP_03268977.1| dihydrolipoamide dehydrogenase [Burkholderia sp. H160]
 gi|209499365|gb|EDZ99449.1| dihydrolipoamide dehydrogenase [Burkholderia sp. H160]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|206559883|ref|YP_002230647.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia J2315]
 gi|198035924|emb|CAR51816.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia J2315]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|171317102|ref|ZP_02906305.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria MEX-5]
 gi|171097736|gb|EDT42563.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria MEX-5]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|170700012|ref|ZP_02891037.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria IOP40-10]
 gi|170135071|gb|EDT03374.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria IOP40-10]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|167836810|ref|ZP_02463693.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis
          MSMB43]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|167587328|ref|ZP_02379716.1| dihydrolipoamide dehydrogenase [Burkholderia ubonensis Bu]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|167562927|ref|ZP_02355843.1| dihydrolipoamide dehydrogenase [Burkholderia oklahomensis EO147]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|148544742|ref|YP_001272112.1| flavocytochrome c [Lactobacillus reuteri DSM 20016]
 gi|184154094|ref|YP_001842435.1| fumarate reductase flavoprotein subunit [Lactobacillus reuteri
          JCM 1112]
 gi|227363867|ref|ZP_03847972.1| succinate dehydrogenase [Lactobacillus reuteri MM2-3]
 gi|325683077|ref|ZP_08162593.1| fumarate reductase subunit A [Lactobacillus reuteri MM4-1A]
 gi|148531776|gb|ABQ83775.1| flavocytochrome c [Lactobacillus reuteri DSM 20016]
 gi|183225438|dbj|BAG25955.1| fumarate reductase flavoprotein subunit [Lactobacillus reuteri
          JCM 1112]
 gi|227071094|gb|EEI09412.1| succinate dehydrogenase [Lactobacillus reuteri MM2-3]
 gi|324977427|gb|EGC14378.1| fumarate reductase subunit A [Lactobacillus reuteri MM4-1A]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDVIVIG G  G  AA  A +LG  T +          +  N      G       
Sbjct: 13 LDNDYDVIVIGSGGTGLSAAIQANELGMKTVV----LEKEEELGGNTNRASSGMNAAETN 68

Query: 62 IDALDGLMGRVAD 74
          +    G++  VAD
Sbjct: 69 VQLQHGVIDNVAD 81


>gi|227544043|ref|ZP_03974092.1| succinate dehydrogenase [Lactobacillus reuteri CF48-3A]
 gi|300908308|ref|ZP_07125773.1| fumarate reductase subunit A [Lactobacillus reuteri SD2112]
 gi|146142507|gb|ABQ01723.1| fumarate reductase flavoprotein subunit [Lactobacillus reuteri]
 gi|227185982|gb|EEI66053.1| succinate dehydrogenase [Lactobacillus reuteri CF48-3A]
 gi|300894555|gb|EFK87912.1| fumarate reductase subunit A [Lactobacillus reuteri SD2112]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDVIVIG G  G  AA  A +LG  T +          +  N      G       
Sbjct: 13 LDNDYDVIVIGSGGTGLSAAIQANELGMKTVV----LEKEEELGGNTNRASSGMNAAETN 68

Query: 62 IDALDGLMGRVAD 74
          +    G++  VAD
Sbjct: 69 VQLQHGVIDNVAD 81


>gi|119492678|ref|ZP_01623857.1| hypothetical protein L8106_00205 [Lyngbya sp. PCC 8106]
 gi|119453016|gb|EAW34187.1| hypothetical protein L8106_00205 [Lyngbya sp. PCC 8106]
          Length = 419

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          R +DV+V+G G +G   A   AK G    L    
Sbjct: 2  RHFDVVVVGAGPSGGHCARQLAKSGKKVLLAEQH 35


>gi|161524918|ref|YP_001579930.1| dihydrolipoamide dehydrogenase [Burkholderia multivorans ATCC
          17616]
 gi|189350332|ref|YP_001945960.1| dihydrolipoamide dehydrogenase [Burkholderia multivorans ATCC
          17616]
 gi|160342347|gb|ABX15433.1| dihydrolipoamide dehydrogenase [Burkholderia multivorans ATCC
          17616]
 gi|189334354|dbj|BAG43424.1| dihydrolipoamide dehydrogenase [Burkholderia multivorans ATCC
          17616]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|172060484|ref|YP_001808136.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria MC40-6]
 gi|171993001|gb|ACB63920.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria MC40-6]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|194467001|ref|ZP_03072988.1| flavocytochrome c [Lactobacillus reuteri 100-23]
 gi|194454037|gb|EDX42934.1| flavocytochrome c [Lactobacillus reuteri 100-23]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDVIVIG G  G  AA  A +LG  T +          +  N      G       
Sbjct: 13 LDNDYDVIVIGSGGTGLSAAIQANELGMKTVV----LEKEEELGGNTNRASSGMNAAETN 68

Query: 62 IDALDGLMGRVAD 74
          +    G++  VAD
Sbjct: 69 VQLQHGVIDNVAD 81


>gi|83720959|ref|YP_443071.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis E264]
 gi|167582076|ref|ZP_02374950.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis TXDOH]
 gi|167620236|ref|ZP_02388867.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis Bt4]
 gi|257139300|ref|ZP_05587562.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis E264]
 gi|83654784|gb|ABC38847.1| dihydrolipoamide dehydrogenase [Burkholderia thailandensis E264]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|55821073|ref|YP_139515.1| acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus LMG 18311]
 gi|55737058|gb|AAV60700.1| acetoin/pyruvate dehydrogenase complex, E3 component,
           dihydrolipoamide dehydrogenase [Streptococcus
           thermophilus LMG 18311]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD++V+GGG AG  AA   A+LG   A++
Sbjct: 123 LADNEYDIVVVGGGPAGYYAAIRGAQLGGKVAIV 156


>gi|78066121|ref|YP_368890.1| dihydrolipoamide dehydrogenase [Burkholderia sp. 383]
 gi|77966866|gb|ABB08246.1| dihydrolipoamide dehydrogenase [Burkholderia sp. 383]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|78355512|ref|YP_386961.1| thioredoxin reductase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
 gi|78217917|gb|ABB37266.1| thioredoxin reductase [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
          Length = 305

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  R  DV+++GGG AG  AA  AA+ G    L+   
Sbjct: 1  METRQVDVLILGGGVAGMTAAVYAARAGLRVTLLEEN 37


>gi|170732836|ref|YP_001764783.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia MC0-3]
 gi|254245576|ref|ZP_04938897.1| Pyruvate dehydrogenase complex, dehydrogenase (E1) component
          [Burkholderia cenocepacia PC184]
 gi|124870352|gb|EAY62068.1| Pyruvate dehydrogenase complex, dehydrogenase (E1) component
          [Burkholderia cenocepacia PC184]
 gi|169816078|gb|ACA90661.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia MC0-3]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|115351445|ref|YP_773284.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria AMMD]
 gi|115281433|gb|ABI86950.1| dihydrolipoamide dehydrogenase [Burkholderia ambifaria AMMD]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|76809352|ref|YP_333325.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 1710b]
 gi|167738805|ref|ZP_02411579.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 14]
 gi|254179971|ref|ZP_04886570.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1655]
 gi|254188619|ref|ZP_04895130.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei Pasteur 52237]
 gi|254260193|ref|ZP_04951247.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1710a]
 gi|76578805|gb|ABA48280.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 1710b]
 gi|157936298|gb|EDO91968.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei Pasteur 52237]
 gi|184210511|gb|EDU07554.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1655]
 gi|254218882|gb|EET08266.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1710a]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|107022583|ref|YP_620910.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia AU 1054]
 gi|116689532|ref|YP_835155.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia HI2424]
 gi|105892772|gb|ABF75937.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia AU 1054]
 gi|116647621|gb|ABK08262.1| dihydrolipoamide dehydrogenase [Burkholderia cenocepacia HI2424]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|53724836|ref|YP_102749.1| dihydrolipoamide dehydrogenase [Burkholderia mallei ATCC 23344]
 gi|67640995|ref|ZP_00439784.1| dihydrolipoyl dehydrogenase [Burkholderia mallei GB8 horse 4]
 gi|121599298|ref|YP_992826.1| dihydrolipoamide dehydrogenase [Burkholderia mallei SAVP1]
 gi|124385122|ref|YP_001026169.1| dihydrolipoamide dehydrogenase [Burkholderia mallei NCTC 10229]
 gi|126449088|ref|YP_001080561.1| dihydrolipoamide dehydrogenase [Burkholderia mallei NCTC 10247]
 gi|254177487|ref|ZP_04884142.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei ATCC 10399]
 gi|254199698|ref|ZP_04906064.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei FMH]
 gi|254206021|ref|ZP_04912373.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei JHU]
 gi|254358393|ref|ZP_04974666.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei 2002721280]
 gi|52428259|gb|AAU48852.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei ATCC 23344]
 gi|121228108|gb|ABM50626.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei SAVP1]
 gi|124293142|gb|ABN02411.1| dihydrolipoyl dehydrogenase [Burkholderia mallei NCTC 10229]
 gi|126241958|gb|ABO05051.1| dihydrolipoyl dehydrogenase [Burkholderia mallei NCTC 10247]
 gi|147749294|gb|EDK56368.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei FMH]
 gi|147753464|gb|EDK60529.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei JHU]
 gi|148027520|gb|EDK85541.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei 2002721280]
 gi|160698526|gb|EDP88496.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia mallei ATCC 10399]
 gi|238521837|gb|EEP85286.1| dihydrolipoyl dehydrogenase [Burkholderia mallei GB8 horse 4]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|53719521|ref|YP_108507.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei K96243]
 gi|126439092|ref|YP_001058791.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 668]
 gi|126455059|ref|YP_001066043.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 1106a]
 gi|134282311|ref|ZP_01769016.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 305]
 gi|167719804|ref|ZP_02403040.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei DM98]
 gi|167816028|ref|ZP_02447708.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 91]
 gi|167824403|ref|ZP_02455874.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 9]
 gi|167845935|ref|ZP_02471443.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei B7210]
 gi|167894512|ref|ZP_02481914.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 7894]
 gi|167902914|ref|ZP_02490119.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei NCTC
          13177]
 gi|167911154|ref|ZP_02498245.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei 112]
 gi|167919176|ref|ZP_02506267.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei BCC215]
 gi|217423345|ref|ZP_03454846.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei 576]
 gi|226199676|ref|ZP_03795229.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei Pakistan
          9]
 gi|237812053|ref|YP_002896504.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei MSHR346]
 gi|242316373|ref|ZP_04815389.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1106b]
 gi|254198326|ref|ZP_04904748.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei S13]
 gi|254297806|ref|ZP_04965259.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 406e]
 gi|52209935|emb|CAH35907.1| dihydrolipoamide dehydrogenase [Burkholderia pseudomallei K96243]
 gi|126218585|gb|ABN82091.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei 668]
 gi|126228701|gb|ABN92241.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1106a]
 gi|134246349|gb|EBA46438.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 305]
 gi|157807643|gb|EDO84813.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 406e]
 gi|169655067|gb|EDS87760.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei S13]
 gi|217393203|gb|EEC33224.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei 576]
 gi|225928262|gb|EEH24296.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei Pakistan
          9]
 gi|237505044|gb|ACQ97362.1| dihydrolipoyl dehydrogenase [Burkholderia pseudomallei MSHR346]
 gi|242139612|gb|EES26014.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Burkholderia pseudomallei 1106b]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|134295584|ref|YP_001119319.1| dihydrolipoamide dehydrogenase [Burkholderia vietnamiensis G4]
 gi|134138741|gb|ABO54484.1| dihydrolipoamide dehydrogenase [Burkholderia vietnamiensis G4]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|325973332|ref|YP_004250396.1| thioredoxin reductase [Mycoplasma suis str. Illinois]
 gi|323651934|gb|ADX98016.1| thioredoxin reductase [Mycoplasma suis str. Illinois]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +R +DVI+IG G AG  AA   A+   +  ++
Sbjct: 1  MSDRIWDVIIIGSGPAGATAAIYCARSCLNVLIL 34


>gi|269958677|ref|YP_003328464.1| dihydrolipoamide dehydrogenase [Anaplasma centrale str. Israel]
 gi|269848506|gb|ACZ49150.1| dihydrolipoamide dehydrogenase [Anaplasma centrale str. Israel]
          Length = 471

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA------LITHKTSTIGSMSCNPAIGGLGKGHL 58
           YDV VIG G  G + A  AAKLG   A      L+      +G +     +    K H 
Sbjct: 5  DYDVAVIGAGPGGYKCALKAAKLGLKVASIDNNSLLGGTCLRVGCIPSKALLDYSYKYHA 64

Query: 59 VREI 62
          VR+I
Sbjct: 65 VRDI 68


>gi|261880151|ref|ZP_06006578.1| thiazole biosynthesis enzyme [Prevotella bergensis DSM 17361]
 gi|270333121|gb|EFA43907.1| thiazole biosynthesis enzyme [Prevotella bergensis DSM 17361]
          Length = 258

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 28/164 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N + DV ++GGG +G  AA   AK G   AL   K         +P  GGL  G ++   
Sbjct: 21  NLNLDVAIVGGGPSGIVAAYYLAKAGLRVALFDRKL--------SPG-GGLWGGAMMFNQ 71

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
             +      +    GI F+         +    + A    + +     + +         
Sbjct: 72  AVIQEEAISIVREFGINFKPYEDS-LYTIDTVESTAGLLYHAVHAGATVFNCY------- 123

Query: 123 EVAGFNTEKNIISSIVMQ-----------DNSMIRCSTVVLTTG 155
            V     + N +S +V+            D   IR   V+  TG
Sbjct: 124 SVEDVVYKNNRVSGVVVNWTPVLREGMHVDPLNIRAKCVIDGTG 167


>gi|218438662|ref|YP_002376991.1| succinate dehydrogenase flavoprotein subunit [Cyanothece sp. PCC
          7424]
 gi|218171390|gb|ACK70123.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 7424]
          Length = 575

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKL 27
           +DVI+IGGG AGC AA    +L
Sbjct: 3  QHDVIIIGGGLAGCRAALEIKRL 25


>gi|169631497|ref|YP_001705146.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium
          abscessus ATCC 19977]
 gi|169243464|emb|CAM64492.1| Putative succinate dehydrogenase, flavoprotein subunit
          [Mycobacterium abscessus]
          Length = 641

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 14/85 (16%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            YDV+VIG G AG  A   A + G   A++       G      A GG           
Sbjct: 7  HQYDVVVIGAGGAGLRAVIEAREQGFKVAVVCKSL--FGKAHTVMAEGGCAAS------- 57

Query: 64 ALDGLMGRVADAAGIQFRVLNVKKG 88
               MG   D    Q    +  +G
Sbjct: 58 -----MGNANDKDSWQIHFGDTMRG 77


>gi|183220301|ref|YP_001838297.1| putative phytoene dehydrogenase-related protein [Leptospira
          biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910419|ref|YP_001961974.1| phytoene dehydrogenase-like protein [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167775095|gb|ABZ93396.1| Phytoene dehydrogenase-related protein [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778723|gb|ABZ97021.1| Putative phytoene dehydrogenase-related protein [Leptospira
          biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 527

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG G+AG  AA    + G+ T L+
Sbjct: 24 HYDTVVIGAGNAGLMAATRLQREGSKTLLL 53


>gi|116873842|ref|YP_850623.1| thioredoxin reductase [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742720|emb|CAK21844.1| thioredoxin reductase [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 319

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|71894606|ref|YP_278714.1| thioredoxin reductase [Mycoplasma synoviae 53]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 41/155 (26%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N  YD+++IG G AG  AA  A++       +                 G   G L  
Sbjct: 2   MQNEKYDLLIIGSGPAGLNAALYASRANLKVGFVE---------------KGAPGGKLST 46

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                + L  ++ D A +     +            QA    Y                I
Sbjct: 47  TSKVENWLGTKMIDGAALALEFFDH----------AQAYGAQY----------------I 80

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            GEVA   +       ++++D  +++  T+++ TG
Sbjct: 81  YGEVASIKSHSLFDKEVLLKDGKVLKAKTILIATG 115


>gi|15606129|ref|NP_213506.1| dihydrolipoamide dehydrogenase [Aquifex aeolicus VF5]
 gi|2983315|gb|AAC06905.1| dihydrolipoamide dehydrogenase [Aquifex aeolicus VF5]
          Length = 465

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +D+I++G G  G EA   A + G   A +     T+G
Sbjct: 2  EFDLIIVGAGSGGYEAGLYAFRRGMKVAFVELSPETVG 39


>gi|329850321|ref|ZP_08265166.1| glutathione reductase [Asticcacaulis biprosthecum C19]
 gi|328840636|gb|EGF90207.1| glutathione reductase [Asticcacaulis biprosthecum C19]
          Length = 457

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGAST 31
          M    YD+ VIG G  G  AA +AA +G   
Sbjct: 1  MAEYDYDLFVIGAGSGGVRAARLAANMGLKV 31


>gi|307266457|ref|ZP_07547992.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918498|gb|EFN48737.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 651

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           V+V GGG AG +AA  AAK G    L   K    G +    A  G  K
Sbjct: 388 VVVAGGGPAGMQAAITAAKRGHQVILYEKKQHLGGQLEIASASPGKAK 435


>gi|304438262|ref|ZP_07398203.1| thioredoxin-disulfide reductase [Selenomonas sp. oral taxon 149
          str. 67H29BP]
 gi|304368628|gb|EFM22312.1| thioredoxin-disulfide reductase [Selenomonas sp. oral taxon 149
          str. 67H29BP]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          D+I+IG G AG  AA  A ++   T ++ +  
Sbjct: 9  DIIIIGAGMAGLTAALYAGRMNLRTLVLENSL 40


>gi|239932932|ref|ZP_04689885.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 522

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 7  SRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 38


>gi|229015137|ref|ZP_04172192.1| phytoene dehydrogenase enzyme [Bacillus mycoides DSM 2048]
 gi|228746153|gb|EEL96101.1| phytoene dehydrogenase enzyme [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KHFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSHFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGEAFITFN 70


>gi|229136428|ref|ZP_04265147.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST196]
 gi|228647021|gb|EEL03137.1| phytoene dehydrogenase enzyme [Bacillus cereus BDRD-ST196]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KHFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSHFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGEAFITFN 70


>gi|167578986|ref|ZP_02371860.1| choline dehydrogenase [Burkholderia thailandensis TXDOH]
          Length = 550

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 106 AMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            +  ++ ++ENL +  G  V     + +    + +     I    V+L+ G++    I +
Sbjct: 251 YLTNDVRARENLQIRGGSLVDRVLFDNDRAIGVRLASGEEIHAGEVILSAGSYGSAAILL 310

Query: 165 GK-----LKIPAGRMGDSPSNSLFNSFMKFDFDTGRL 196
                    + A  + +  +  +        F     
Sbjct: 311 RSGIGPGADLHALSIPEVANLPVGKRLKDHPFYYNAY 347


>gi|163942843|ref|YP_001647727.1| thioredoxin reductase [Bacillus weihenstephanensis KBAB4]
 gi|163865040|gb|ABY46099.1| thioredoxin reductase [Bacillus weihenstephanensis KBAB4]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|225441311|ref|XP_002275769.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 504

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E +A+D
Sbjct: 89  DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP---------NNYGVWVDEFEAMD 139

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L       +G    + +  K    R       ++L    MQ+ IL+   +   Q +V  
Sbjct: 140 LLDCLDTTWSGAVVFIDDHSKKDLGRPYARVNRKQLKSKMMQKCILN--GVKFHQAKVIK 197

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E++  S ++  D   I+ + V+  TG F R ++   K   P           L    
Sbjct: 198 VIHEESK-SLLICNDGVTIQAAVVLDATG-FSRCLVQYDK---PYNPGYQVAYGILAEV- 251

Query: 187 MKFDFDTGRL 196
            +  FD  ++
Sbjct: 252 EEHPFDVDKM 261


>gi|114707096|ref|ZP_01439995.1| glutathione reductase protein [Fulvimarina pelagi HTCC2506]
 gi|114537646|gb|EAU40771.1| glutathione reductase protein [Fulvimarina pelagi HTCC2506]
          Length = 81

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M N  YD+ VIGGG  G  AA  AA+LG   A+
Sbjct: 1  MANYDYDLFVIGGGSGGVRAARRAAQLGKRVAI 33


>gi|90419914|ref|ZP_01227823.1| oxidoreductase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335955|gb|EAS49703.1| oxidoreductase [Aurantimonas manganoxydans SI85-9A1]
          Length = 427

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 23/230 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +R+ DV+V+GGG  G  AA   A+ G + A++       G+   N    G G+     EI
Sbjct: 30  SRNVDVLVVGGGFTGLSAALHLARTGVAVAVLEAHRFGDGASGRNGGQMGTGQRLWPMEI 89

Query: 63  DALDGL--------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-- 112
           +A  G         +   A A   +F   N        G  +   +  Y    + ++   
Sbjct: 90  EAAYGFERSKALFDLAEEAKAHLTEFITANGIDADYREGQLSVVHKRRYLKDYRAQVEDL 149

Query: 113 ----SQENLDVIQGEVAGFNTEKNIISSIVMQDNS--------MIRCSTVVLTTGTFLRG 160
               +  ++  +                 +    +        ++  + V    G  L  
Sbjct: 150 TTRYAYPHVSFMDAAETADRLGSRRYFGGIRDTGTGHINPMKLVVGSARVAAEAGAQLFE 209

Query: 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII 210
             H+ +L   AGR+    ++    S  +    T     G   ++D   + 
Sbjct: 210 NSHVERLDRRAGRIVAVTAHG-EVSAERVLIATNAYGGGLDPQVDAHVMP 258


>gi|163940226|ref|YP_001645110.1| amine oxidase [Bacillus weihenstephanensis KBAB4]
 gi|163862423|gb|ABY43482.1| amine oxidase [Bacillus weihenstephanensis KBAB4]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  KHFDVAIVGGGLAGLTASIYLAKAGRKVIVLE-KSSHFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGEAFITFN 70


>gi|87118259|ref|ZP_01074158.1| oxidoreductase, FAD/FMN-binding [Marinomonas sp. MED121]
 gi|86165893|gb|EAQ67159.1| oxidoreductase, FAD/FMN-binding [Marinomonas sp. MED121]
          Length = 685

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  + +V+GGG AG EAA V A+ G    LI
Sbjct: 389 KIQNAVVVGGGPAGMEAARVLAERGHKVTLI 419


>gi|324325434|gb|ADY20694.1| hypothetical protein YBT020_07240 [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 397

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          DV+V+G G AG + A   AK+G    LI     + GS + N  +
Sbjct: 29 DVLVVGSGEAGAQIAYSLAKMGMCVTLIEKNMISCGSTAANTGL 72


>gi|229032770|ref|ZP_04188728.1| Thioredoxin reductase [Bacillus cereus AH1271]
 gi|228728538|gb|EEL79556.1| Thioredoxin reductase [Bacillus cereus AH1271]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|229195613|ref|ZP_04322379.1| Oxidoreductase [Bacillus cereus m1293]
 gi|228587862|gb|EEK45914.1| Oxidoreductase [Bacillus cereus m1293]
          Length = 397

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          DV+V+G G AG + A   AK+G    LI     + GS + N  +
Sbjct: 29 DVLVVGSGEAGAQIAYSLAKMGMCVTLIEKNMISCGSTAANTGL 72


>gi|225874287|ref|YP_002755746.1| pyridine nucleotide-disulphide oxidoreductase [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791658|gb|ACO31748.1| pyridine nucleotide-disulphide oxidoreductase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 459

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
           +  S+D IV+G G AG   A   AK G   A++       T  +  C P    +      
Sbjct: 1   MRESFDAIVVGAGQAGPSLARRLAKAGRKVAVVERHLFGGTCVNTGCTPTKAMVASARAA 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             +       G  A    + +  +  +K   V   RT  ++          +   EN  V
Sbjct: 61  H-MARRGEDFGFSAGPVAVDWGAVKRRKNQIVEKSRTGVEKG---------LRETENCTV 110

Query: 120 IQGEV 124
             G  
Sbjct: 111 FTGTA 115


>gi|238590067|ref|XP_002392205.1| hypothetical protein MPER_08253 [Moniliophthora perniciosa FA553]
 gi|215457934|gb|EEB93135.1| hypothetical protein MPER_08253 [Moniliophthora perniciosa FA553]
          Length = 336

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++    V+VIGGG AG  AA  A + GA   L          +   P+ G    G+ V+ 
Sbjct: 1  MSNPRTVLVIGGGLAGLTAAHTALEHGAKVIL----------IDKKPSRGNRFGGNSVK- 49

Query: 62 IDALDGLMGRVADAAGIQ 79
            A  G+ G V DA    
Sbjct: 50 --ASSGINGAVTDAQKQH 65


>gi|254439036|ref|ZP_05052530.1| succinate dehydrogenase, flavoprotein subunit [Octadecabacter
           antarcticus 307]
 gi|198254482|gb|EDY78796.1| succinate dehydrogenase, flavoprotein subunit [Octadecabacter
           antarcticus 307]
          Length = 601

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 74/253 (29%), Gaps = 60/253 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTAL-----------------ITHKTSTIGSMS 45
              YD +V+G G AG  A    A+ G  TA                  I      +G  S
Sbjct: 8   THDYDCVVVGAGGAGLRATLGMAEQGLRTACISKVFPTRSHTVAAQGGIAASLGNMGPDS 67

Query: 46  CNPAIGGLGKGHLVREIDALDGLMGRVA-------DAAGIQFRVLNVKK----------- 87
               +    KG            + R A       +  G+ F      K           
Sbjct: 68  WQWHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTT 127

Query: 88  ----GPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKNII-S 135
               GPAV+     ADR        LY  +++++         I+          + + +
Sbjct: 128 EFGEGPAVQRTCAAADRTGHAILHTLYGQSLKQKAEFY-----IEYFAIDLIMSDDGVCT 182

Query: 136 SIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSFMKF 189
            +V   + D +M       VVL TG + R            G   G +    L    M+F
Sbjct: 183 GVVCWKLDDGTMHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMAARAGLPMQDMEF 242

Query: 190 --DFDTGRLKTGT 200
                TG   +G 
Sbjct: 243 VQFHPTGIYGSGC 255


>gi|134283040|ref|ZP_01769742.1| oxidoreductase [Burkholderia pseudomallei 305]
 gi|134245688|gb|EBA45780.1| oxidoreductase [Burkholderia pseudomallei 305]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|121610969|ref|YP_998776.1| NADH:flavin oxidoreductase/NADH oxidase [Verminephrobacter eiseniae
           EF01-2]
 gi|121555609|gb|ABM59758.1| NADH:flavin oxidoreductase/NADH oxidase [Verminephrobacter eiseniae
           EF01-2]
          Length = 686

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+V+G G AG EAA VA + G    L   
Sbjct: 391 VVVVGAGPAGLEAARVARERGHEVLLFEQ 419


>gi|107029131|ref|YP_626226.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|105898295|gb|ABF81253.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
          Length = 441

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 23/190 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG--------GLGKGHL 58
           DV ++G G AG  AA  AA LG    L+      +G  + N  IG        G  +  +
Sbjct: 30  DVCIVGAGIAGTSAALEAAALGRKVVLVD-SLPALGGQAVNSIIGTFCGLFSNGPKRFQV 88

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              I   DG++  + +   + ++     +GP         D       ++++IL    + 
Sbjct: 89  THGI--ADGILRDLGEKGALHYK-----EGP--LTTVVLYDEVALARWIEQKILD-AGIT 138

Query: 119 VIQGEVA-GFNTEKNIIS--SIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+ G V      E   +    +  +   + I     V  +G      +     + P   +
Sbjct: 139 VVLGAVLRDVVREGRRVRELDVATRYGDVRIAADGFVDASGDAALTWLAGFDCQEPETPI 198

Query: 175 GDSPSNSLFN 184
             +    L N
Sbjct: 199 RGTQMIVLEN 208


>gi|254296734|ref|ZP_04964188.1| oxidoreductase [Burkholderia pseudomallei 406e]
 gi|157806666|gb|EDO83836.1| oxidoreductase [Burkholderia pseudomallei 406e]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|116749233|ref|YP_845920.1| hypothetical protein Sfum_1800 [Syntrophobacter fumaroxidans
          MPOB]
 gi|116698297|gb|ABK17485.1| conserved hypothetical protein [Syntrophobacter fumaroxidans
          MPOB]
          Length = 55

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          + +V+VIGGG AG +A+   A++G    L+             P+IGG 
Sbjct: 2  NREVLVIGGGIAGIQASLDLAEMGIKVHLVE----------RLPSIGGK 40


>gi|76817650|ref|YP_337165.1| oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|254263034|ref|ZP_04953899.1| oxidoreductase [Burkholderia pseudomallei 1710a]
 gi|76582123|gb|ABA51597.1| oxidoreductase [Burkholderia pseudomallei 1710b]
 gi|254214036|gb|EET03421.1| oxidoreductase [Burkholderia pseudomallei 1710a]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|30265183|ref|NP_847560.1| thioredoxin reductase [Bacillus anthracis str. Ames]
 gi|42784308|ref|NP_981555.1| thioredoxin reductase [Bacillus cereus ATCC 10987]
 gi|47778397|ref|YP_022046.2| thioredoxin reductase [Bacillus anthracis str. 'Ames Ancestor']
 gi|65317129|ref|ZP_00390088.1| COG0492: Thioredoxin reductase [Bacillus anthracis str. A2012]
 gi|165869991|ref|ZP_02214648.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0488]
 gi|167635282|ref|ZP_02393597.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0442]
 gi|167640534|ref|ZP_02398797.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0193]
 gi|170688015|ref|ZP_02879228.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0465]
 gi|170707776|ref|ZP_02898227.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0389]
 gi|177652999|ref|ZP_02935326.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0174]
 gi|190567821|ref|ZP_03020733.1| thioredoxin-disulfide reductase [Bacillus anthracis
          Tsiankovskii-I]
 gi|196032713|ref|ZP_03100126.1| thioredoxin-disulfide reductase [Bacillus cereus W]
 gi|196039603|ref|ZP_03106908.1| thioredoxin-disulfide reductase [Bacillus cereus NVH0597-99]
 gi|196045739|ref|ZP_03112969.1| thioredoxin-disulfide reductase [Bacillus cereus 03BB108]
 gi|206976818|ref|ZP_03237721.1| thioredoxin-disulfide reductase [Bacillus cereus H3081.97]
 gi|217962638|ref|YP_002341210.1| thioredoxin-disulfide reductase [Bacillus cereus AH187]
 gi|218906330|ref|YP_002454164.1| thioredoxin-disulfide reductase [Bacillus cereus AH820]
 gi|225867120|ref|YP_002752498.1| thioredoxin-disulfide reductase [Bacillus cereus 03BB102]
 gi|227817916|ref|YP_002817925.1| thioredoxin-disulfide reductase [Bacillus anthracis str. CDC 684]
 gi|228917761|ref|ZP_04081301.1| Thioredoxin reductase [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228930157|ref|ZP_04093166.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936441|ref|ZP_04099239.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228948874|ref|ZP_04111149.1| Thioredoxin reductase [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228988380|ref|ZP_04148472.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229094252|ref|ZP_04225328.1| Thioredoxin reductase [Bacillus cereus Rock3-42]
 gi|229124662|ref|ZP_04253843.1| Thioredoxin reductase [Bacillus cereus 95/8201]
 gi|229141882|ref|ZP_04270408.1| Thioredoxin reductase [Bacillus cereus BDRD-ST26]
 gi|229187366|ref|ZP_04314509.1| Thioredoxin reductase [Bacillus cereus BGSC 6E1]
 gi|229199274|ref|ZP_04325942.1| Thioredoxin reductase [Bacillus cereus m1293]
 gi|229602880|ref|YP_002869377.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0248]
 gi|254686416|ref|ZP_05150275.1| thioredoxin-disulfide reductase [Bacillus anthracis str.
          CNEVA-9066]
 gi|254724415|ref|ZP_05186199.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A1055]
 gi|254735622|ref|ZP_05193329.1| thioredoxin-disulfide reductase [Bacillus anthracis str. Western
          North America USA6153]
 gi|254744291|ref|ZP_05201971.1| thioredoxin-disulfide reductase [Bacillus anthracis str. Kruger
          B]
 gi|254755589|ref|ZP_05207622.1| thioredoxin-disulfide reductase [Bacillus anthracis str. Vollum]
 gi|254757044|ref|ZP_05209072.1| thioredoxin-disulfide reductase [Bacillus anthracis str.
          Australia 94]
 gi|30259860|gb|AAP29046.1| thioredoxin-disulfide reductase [Bacillus anthracis str. Ames]
 gi|42740239|gb|AAS44163.1| thioredoxin reductase [Bacillus cereus ATCC 10987]
 gi|47552102|gb|AAT34521.2| thioredoxin-disulfide reductase [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|164714314|gb|EDR19834.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0488]
 gi|167511577|gb|EDR86960.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0193]
 gi|167529325|gb|EDR92077.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0442]
 gi|170127333|gb|EDS96209.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0389]
 gi|170668124|gb|EDT18874.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0465]
 gi|172081774|gb|EDT66844.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0174]
 gi|190561237|gb|EDV15210.1| thioredoxin-disulfide reductase [Bacillus anthracis
          Tsiankovskii-I]
 gi|195994142|gb|EDX58097.1| thioredoxin-disulfide reductase [Bacillus cereus W]
 gi|196023570|gb|EDX62247.1| thioredoxin-disulfide reductase [Bacillus cereus 03BB108]
 gi|196029763|gb|EDX68365.1| thioredoxin-disulfide reductase [Bacillus cereus NVH0597-99]
 gi|206744953|gb|EDZ56357.1| thioredoxin-disulfide reductase [Bacillus cereus H3081.97]
 gi|217063915|gb|ACJ78165.1| thioredoxin-disulfide reductase [Bacillus cereus AH187]
 gi|218536471|gb|ACK88869.1| thioredoxin-disulfide reductase [Bacillus cereus AH820]
 gi|225788471|gb|ACO28688.1| thioredoxin-disulfide reductase [Bacillus cereus 03BB102]
 gi|227007035|gb|ACP16778.1| thioredoxin-disulfide reductase [Bacillus anthracis str. CDC 684]
 gi|228584199|gb|EEK42349.1| Thioredoxin reductase [Bacillus cereus m1293]
 gi|228596070|gb|EEK53747.1| Thioredoxin reductase [Bacillus cereus BGSC 6E1]
 gi|228641497|gb|EEK97802.1| Thioredoxin reductase [Bacillus cereus BDRD-ST26]
 gi|228658757|gb|EEL14416.1| Thioredoxin reductase [Bacillus cereus 95/8201]
 gi|228689105|gb|EEL42928.1| Thioredoxin reductase [Bacillus cereus Rock3-42]
 gi|228771361|gb|EEM19835.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228810836|gb|EEM57182.1| Thioredoxin reductase [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228823273|gb|EEM69107.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228829442|gb|EEM75070.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228841866|gb|EEM86973.1| Thioredoxin reductase [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|229267288|gb|ACQ48925.1| thioredoxin-disulfide reductase [Bacillus anthracis str. A0248]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|331697963|ref|YP_004334202.1| 2,4-dienoyl-CoA reductase [Pseudonocardia dioxanivorans CB1190]
 gi|326952652|gb|AEA26349.1| 2,4-dienoyl-CoA reductase (NADPH) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 673

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+GGG AG EAA  A + G +  L+
Sbjct: 390 VLVVGGGPAGLEAALSARRAGHTVRLV 416


>gi|315926679|gb|EFV06058.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni DFVF1099]
          Length = 307

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|167913851|ref|ZP_02500942.1| oxidoreductase [Burkholderia pseudomallei 112]
 gi|217424470|ref|ZP_03455968.1| FAD dependent oxidoreductase [Burkholderia pseudomallei 576]
 gi|217392394|gb|EEC32418.1| FAD dependent oxidoreductase [Burkholderia pseudomallei 576]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|167905541|ref|ZP_02492746.1| oxidoreductase [Burkholderia pseudomallei NCTC 13177]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|126652655|ref|ZP_01724816.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp.
          B14905]
 gi|126590504|gb|EAZ84622.1| succinate dehydrogenase flavoprotein subunit [Bacillus sp.
          B14905]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG  A   AA++G    L +          C    G  G  +   E D
Sbjct: 6  VIVVGGGLAGLMATIKAAEVGTEVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|126695569|ref|YP_001090455.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9301]
 gi|126542612|gb|ABO16854.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Prochlorococcus marinus str. MIT 9301]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   ++    T +          +  NP++G L   H
Sbjct: 7  DVVIIGGGPAGCTCALYTSRSNLKTVV----------LDKNPSVGALAITH 47


>gi|154174944|ref|YP_001408711.1| fumarate reductase flavoprotein subunit [Campylobacter curvus
          525.92]
 gi|153793152|gb|ABS50413.1| fumarate reductase flavoprotein subunit [Campylobacter curvus
          525.92]
          Length = 662

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  +  D +VIGGG AG  AA  A + G ST +++ 
Sbjct: 1  MNVKYCDALVIGGGLAGLRAAVAAGEKGLSTIVLSL 36


>gi|87200951|ref|YP_498208.1| FAD dependent oxidoreductase [Novosphingobium aromaticivorans DSM
          12444]
 gi|87136632|gb|ABD27374.1| FAD dependent oxidoreductase [Novosphingobium aromaticivorans DSM
          12444]
          Length = 378

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          DV +IGGG  GC AA    + G S  L+   T  +G  +     G +
Sbjct: 9  DVAIIGGGLMGCSAAFFLRQRGLSVVLLE--TDKVGRQASGTNFGNV 53


>gi|16801683|ref|NP_471951.1| thioredoxin reductase [Listeria innocua Clip11262]
 gi|20140653|sp|Q928B5|TRXB_LISIN RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|16415158|emb|CAC97848.1| thioredoxin reductase [Listeria innocua Clip11262]
          Length = 319

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|126458511|ref|YP_001074664.1| oxidoreductase [Burkholderia pseudomallei 1106a]
 gi|167848594|ref|ZP_02474102.1| oxidoreductase [Burkholderia pseudomallei B7210]
 gi|242311892|ref|ZP_04810909.1| FAD dependent oxidoreductase [Burkholderia pseudomallei 1106b]
 gi|126232279|gb|ABN95692.1| FAD dependent oxidoreductase [Burkholderia pseudomallei 1106a]
 gi|242135131|gb|EES21534.1| FAD dependent oxidoreductase [Burkholderia pseudomallei 1106b]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|254187272|ref|ZP_04893786.1| oxidoreductase [Burkholderia pseudomallei Pasteur 52237]
 gi|157934954|gb|EDO90624.1| oxidoreductase [Burkholderia pseudomallei Pasteur 52237]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|53721498|ref|YP_110483.1| oxidoreductase [Burkholderia pseudomallei K96243]
 gi|126444189|ref|YP_001061719.1| oxidoreductase [Burkholderia pseudomallei 668]
 gi|167722547|ref|ZP_02405783.1| oxidoreductase [Burkholderia pseudomallei DM98]
 gi|167818720|ref|ZP_02450400.1| oxidoreductase [Burkholderia pseudomallei 91]
 gi|237509595|ref|ZP_04522310.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          pseudomallei MSHR346]
 gi|254185387|ref|ZP_04891975.1| oxidoreductase [Burkholderia pseudomallei 1655]
 gi|52211912|emb|CAH37917.1| putative oxidoreductase [Burkholderia pseudomallei K96243]
 gi|126223680|gb|ABN87185.1| oxidoreductase [Burkholderia pseudomallei 668]
 gi|184209622|gb|EDU06665.1| oxidoreductase [Burkholderia pseudomallei 1655]
 gi|235001800|gb|EEP51224.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          pseudomallei MSHR346]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|320161069|ref|YP_004174293.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
 gi|319994922|dbj|BAJ63693.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
          Length = 387

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G   A   AK G    ++
Sbjct: 7  HYDVIVIGAGSVGTPTALSLAKAGLKVLVL 36


>gi|290985610|ref|XP_002675518.1| CMF receptor CMFR1 [Naegleria gruberi]
 gi|284089115|gb|EFC42774.1| CMF receptor CMFR1 [Naegleria gruberi]
          Length = 505

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +    YDV ++G G +G   A   AK G    ++  K
Sbjct: 74  LKENEYDVCIVGAGPSGATCAYYLAKFGYKVLVLEQK 110


>gi|288932657|ref|YP_003436717.1| NADH:flavin oxidoreductase/NADH oxidase [Ferroglobus placidus DSM
           10642]
 gi|288894905|gb|ADC66442.1| NADH:flavin oxidoreductase/NADH oxidase [Ferroglobus placidus DSM
           10642]
          Length = 646

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+++GGG AG E A  AAK G    L   K   +G
Sbjct: 386 VVIVGGGPAGLECAVTAAKRGHEVILYE-KEDKLG 419


>gi|229100688|ref|ZP_04231530.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-29]
 gi|228682723|gb|EEL36759.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-29]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+   G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSRRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|229115922|ref|ZP_04245318.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock1-3]
 gi|228667511|gb|EEL22957.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock1-3]
          Length = 436

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DV ++GGG AG  A+   AK G    ++  K+   G           G+G  + +  
Sbjct: 2  KKFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSRRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|254516533|ref|ZP_05128592.1| fumarate reductase flavoprotein subunit [gamma proteobacterium
          NOR5-3]
 gi|219674956|gb|EED31323.1| fumarate reductase flavoprotein subunit [gamma proteobacterium
          NOR5-3]
          Length = 659

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          DV+V+GGG AG   A  A + G     ++   + 
Sbjct: 7  DVLVVGGGLAGLRVAIAAKRRGLDVITLSLVPAK 40


>gi|182415999|ref|YP_001821065.1| dihydrolipoamide dehydrogenase [Opitutus terrae PB90-1]
 gi|177843213|gb|ACB77465.1| dihydrolipoamide dehydrogenase [Opitutus terrae PB90-1]
          Length = 481

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 22/123 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL---------------------ITHKTS 39
           M + S+D+IVIG G  G   A  AA+LG   AL                     + H + 
Sbjct: 1   MSSASFDLIVIGAGPGGYVCAFRAAQLGMKVALVDKRPTLGGTCLNVGCIPSKALLHSSE 60

Query: 40  TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQA 98
            +     + A  G+  G +  +++A       V     G   ++   +K   V G  +  
Sbjct: 61  HVTWAQHHAAEHGIKLGQVELDLEAFMKRKDEVVAKLVGGVAQLAKARKITVVHGAASFL 120

Query: 99  DRE 101
           DR 
Sbjct: 121 DRN 123


>gi|170696781|ref|ZP_02887891.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Burkholderia graminis C4D1M]
 gi|170138316|gb|EDT06534.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Burkholderia graminis C4D1M]
          Length = 211

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|167570117|ref|ZP_02362991.1| dihydrolipoamide dehydrogenase [Burkholderia oklahomensis C6786]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|158318399|ref|YP_001510907.1| FAD dependent oxidoreductase [Frankia sp. EAN1pec]
 gi|158113804|gb|ABW16001.1| FAD dependent oxidoreductase [Frankia sp. EAN1pec]
          Length = 518

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 51/182 (28%), Gaps = 33/182 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS----TIGSMSCNPAIGGLGKGHLVREI 62
           D I+IG G AG  A  + A+ G    ++          +  +      G     H    +
Sbjct: 3   DAIIIGAGPAGLTAGLLLARRGWRVDVLERDVDDRPGDLAGIDDWRRPGATQTWHSHAFL 62

Query: 63  DALDGLMGRVA------DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS--- 113
                L+   A        A     V   +  P        AD EL  L  +R +L    
Sbjct: 63  ARCRSLLAEHAPDVLAALRAAGALEVRLAEHAPPTLTGPAPADDELVVLGCRRAVLDWVL 122

Query: 114 ------QENLDVIQGE-VAGFNTE-------------KNIISSIVMQDNSMIRCSTVVLT 153
                 Q  + V  G  V G   E                +  + + D S      VV  
Sbjct: 123 REVVATQPGVTVRSGTRVVGLRIETDPAPAGPAFSRGPVRVRGVRLADGSSRDADLVVDA 182

Query: 154 TG 155
            G
Sbjct: 183 AG 184


>gi|186476477|ref|YP_001857947.1| dihydrolipoamide dehydrogenase [Burkholderia phymatum STM815]
 gi|184192936|gb|ACC70901.1| dihydrolipoamide dehydrogenase [Burkholderia phymatum STM815]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|742249|prf||2009328A Sar oxidase
          Length = 389

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          I + YDVIV+G G  G  A    +K G  T L+     +      N +  G 
Sbjct: 3  IKKDYDVIVVGAGSMGMAAGYYLSKQGVKTLLV----DSFHPPHTNGSHHGD 50


>gi|730706|sp|P40873|MSOX_ARTST RecName: Full=Monomeric sarcosine oxidase; Short=MSOX
          Length = 389

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          I + YDVIV+G G  G  A    +K G  T L+     +      N +  G 
Sbjct: 3  IKKDYDVIVVGAGSMGMAAGYYLSKQGVKTLLV----DSFHPPHTNGSHHGD 50


>gi|324329100|gb|ADY24360.1| thioredoxin-disulfide reductase [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|229164094|ref|ZP_04292030.1| Thioredoxin reductase [Bacillus cereus R309803]
 gi|228619330|gb|EEK76220.1| Thioredoxin reductase [Bacillus cereus R309803]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|257791639|ref|YP_003182245.1| thioredoxin reductase [Eggerthella lenta DSM 2243]
 gi|317487894|ref|ZP_07946486.1| thioredoxin-disulfide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830608|ref|ZP_08164029.1| thioredoxin-disulfide reductase [Eggerthella sp. HGA1]
 gi|257475536|gb|ACV55856.1| thioredoxin reductase [Eggerthella lenta DSM 2243]
 gi|316913020|gb|EFV34537.1| thioredoxin-disulfide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487354|gb|EGC89796.1| thioredoxin-disulfide reductase [Eggerthella sp. HGA1]
          Length = 324

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV VIG G AG  A   AA+ G +  L 
Sbjct: 24 DVAVIGAGPAGLTAGLYAARAGLNVVLF 51


>gi|227546242|ref|ZP_03976291.1| possible dihydrolipoyl dehydrogenase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213223|gb|EEI81095.1| possible dihydrolipoyl dehydrogenase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 508

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 32/113 (28%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------TH 36
           +++  +D+++IG G  G   A  AA+LG   ALI                        TH
Sbjct: 12  IMSEQFDLVIIGAGPGGYSTALRAAELGMKVALIERDATVGGTCLNRGCIPSKALITATH 71

Query: 37  KTSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
              T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 72  TIDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 124


>gi|222444808|ref|ZP_03607323.1| hypothetical protein METSMIALI_00421 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434373|gb|EEE41538.1| hypothetical protein METSMIALI_00421 [Methanobrevibacter smithii
          DSM 2375]
          Length = 393

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV+VIGGG AG  AA  AA  GA   L+  ++       C   +   G   L
Sbjct: 5  DVLVIGGGPAGSSAAKHAALGGAKVILLDKRSEIGAPKRCAEGVSKKGLAKL 56


>gi|166367743|ref|YP_001660016.1| geranylgeranyl hydrogenase [Microcystis aeruginosa NIES-843]
 gi|159029278|emb|CAO90144.1| chlP [Microcystis aeruginosa PCC 7806]
 gi|166090116|dbj|BAG04824.1| geranylgeranyl hydrogenase [Microcystis aeruginosa NIES-843]
          Length = 405

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 4   VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 53

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   + Y    +RE+L 
Sbjct: 54  LPPEIIDRRVRKMKMISPSNVEVDINLDNQ---DEYIGMCRREVLD 96


>gi|159036700|ref|YP_001535953.1| all-trans-retinol 13,14-reductase [Salinispora arenicola CNS-205]
 gi|157915535|gb|ABV96962.1| All-trans-retinol 13,14-reductase [Salinispora arenicola CNS-205]
          Length = 501

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIG G  G  AA    + G  T L+
Sbjct: 1  MSTHYDVIVIGSGLGGLAAATTLQRGGRRTLLL 33


>gi|309777456|ref|ZP_07672411.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308914770|gb|EFP60555.1| thioredoxin-disulfide reductase [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 308

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD ++IGGG AG  AA   A+   S  ++
Sbjct: 1  MNKQRYDTVIIGGGPAGYSAALYCARSALSVLVL 34


>gi|296220954|ref|XP_002756551.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2 [Callithrix jacchus]
          Length = 581

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 31 LKSEYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|293606723|ref|ZP_06689076.1| FAD-dependent oxidoreductase [Achromobacter piechaudii ATCC
          43553]
 gi|292814873|gb|EFF74001.1| FAD-dependent oxidoreductase [Achromobacter piechaudii ATCC
          43553]
          Length = 430

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV V+G G AG   A   A+ G +  L+  +    G+   N
Sbjct: 31 DVCVVGAGLAGLSTALELARRGRNVTLLEGRRIAWGASGRN 71


>gi|294085595|ref|YP_003552355.1| oxidoreductase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665170|gb|ADE40271.1| oxidoreductase, putative [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 434

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+++G G+AG  AA V A+ G++  ++  +    G+ + N  +   G  ++ + +    
Sbjct: 36  DVLIVGAGYAGLHAAIVLARAGSNVLVVDAEHIGYGASTRNGGMISSGV-NVGKHVKLEK 94

Query: 67  GLMGRVADAAGIQFRVL 83
            + G + D A   +  L
Sbjct: 95  NIEGAMLDEASQSYSWL 111


>gi|291441283|ref|ZP_06580673.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
 gi|291344178|gb|EFE71134.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 534

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R+YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 19 SRTYDAVIVGGGHNGLVAAAYLARAGRSVLVL 50


>gi|282164659|ref|YP_003357044.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
 gi|282156973|dbj|BAI62061.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
          Length = 786

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 33/91 (36%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           VIV+GGG AG  +A   AK G    LI    +  G+M     +    +      + +L  
Sbjct: 141 VIVVGGGIAGMTSALALAKQGIEVHLIEASPTIGGNMVKIGKVFSPDRLTEECAMCSLAP 200

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
           +M  VA    I  R L+              
Sbjct: 201 IMSEVARNKRIHIRTLSRIASIKGHAGDLTV 231


>gi|237733796|ref|ZP_04564277.1| thioredoxin reductase [Mollicutes bacterium D7]
 gi|229383134|gb|EEO33225.1| thioredoxin reductase [Coprobacillus sp. D7]
          Length = 535

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YD I++GGG AG  AA   A+   S  +I      IG      +      G L   
Sbjct: 1  MSNLYDAIIVGGGPAGLSAAIYLARAKFSVLVIE--KEKIGGQITITSEVVNYPGILQTS 58

Query: 62 IDALDGLMGRVADAAGIQF 80
             L   M + A   G +F
Sbjct: 59 GQELTEAMRQQAQNFGAEF 77


>gi|167754566|ref|ZP_02426693.1| hypothetical protein CLORAM_00068 [Clostridium ramosum DSM 1402]
 gi|167705398|gb|EDS19977.1| hypothetical protein CLORAM_00068 [Clostridium ramosum DSM 1402]
          Length = 535

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YD I++GGG AG  AA   A+   S  +I      IG      +      G L   
Sbjct: 1  MSNLYDAIIVGGGPAGLSAAIYLARAKFSVLVIE--KEKIGGQITITSEVVNYPGILQTS 58

Query: 62 IDALDGLMGRVADAAGIQF 80
             L   M + A   G +F
Sbjct: 59 GQELTEAMRQQAQNFGAEF 77


>gi|153010585|ref|YP_001371799.1| NADH:flavin oxidoreductase/NADH oxidase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562473|gb|ABS15970.1| NADH:flavin oxidoreductase/NADH oxidase [Ochrobactrum anthropi ATCC
           49188]
          Length = 687

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL---ITHKTSTIGSMSCNPAIGGLGK 55
           V+V+GGG AG EAA   A+ GA   +    TH    +   S  P +    +
Sbjct: 394 VLVVGGGPAGLEAARAMAERGAEVIVAEKHTHWGGRVTEESALPGLASWAR 444


>gi|148643761|ref|YP_001274274.1| FAD-dependent dehydrogenase [Methanobrevibacter smithii ATCC
          35061]
 gi|261350619|ref|ZP_05976036.1| geranylgeranyl hydrogenase [Methanobrevibacter smithii DSM 2374]
 gi|209572866|sp|A5UNX8|GGR_METS3 RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|148552778|gb|ABQ87906.1| predicted FAD-dependent dehydrogenase, geranylgeranyl reductase
          family [Methanobrevibacter smithii ATCC 35061]
 gi|288861402|gb|EFC93700.1| geranylgeranyl hydrogenase [Methanobrevibacter smithii DSM 2374]
          Length = 393

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV+VIGGG AG  AA  AA  GA   L+  ++       C   +   G   L
Sbjct: 5  DVLVIGGGPAGSSAAKHAALGGAKVILLDKRSEIGAPKRCAEGVSKKGLAKL 56


>gi|117645948|emb|CAL38441.1| hypothetical protein [synthetic construct]
 gi|261857916|dbj|BAI45480.1| squalene epoxidase [synthetic construct]
          Length = 574

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
              I+G V     E +++  +        D   +     V+  G F +  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFR 292


>gi|330808957|ref|YP_004353419.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum
          NFM421]
 gi|327377065|gb|AEA68415.1| putative oxidoreductase [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 377

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI     V+VIGGG +G  AA   A+ G    L+         + C    G    G  +R
Sbjct: 1  MIAAVSKVLVIGGGFSGMTAAIQLARQGIEVDLVEIDP-----LWCPLGAGITLSGPTLR 55

Query: 61 EIDALD 66
           +D + 
Sbjct: 56 ALDTVG 61


>gi|310639395|ref|YP_003944154.1| oxidoreductase protein [Ketogulonicigenium vulgare Y25]
 gi|308752971|gb|ADO44115.1| oxidoreductase protein [Ketogulonicigenium vulgare Y25]
          Length = 543

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N +YDVIV+G G AG  AA      G  T ++      IG+   +PA         + 
Sbjct: 1  MTNATYDVIVVGSGAAGSFAARELTAQGLKTLILEAGP-AIGAKDFDPAKKSPVSDINIW 59

Query: 61 EIDALD----GLMGRVA--DAAGIQFRVLNVKKGP 89
          E         G+  R A        F V N +K P
Sbjct: 60 ERARATLRGQGVQARAAFFAQRVAHFFV-NDRKNP 93


>gi|241889258|ref|ZP_04776561.1| thioredoxin reductase [Gemella haemolysans ATCC 10379]
 gi|241864095|gb|EER68474.1| thioredoxin reductase [Gemella haemolysans ATCC 10379]
          Length = 93

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R+YDVI+IG G AG  AA  A++   +  ++
Sbjct: 1  MSRNYDVIIIGFGPAGLSAALYASRAKLNVLVL 33


>gi|284174271|ref|ZP_06388240.1| thioredoxin reductase (trxB-2) [Sulfolobus solfataricus 98/2]
 gi|261601252|gb|ACX90855.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus solfataricus 98/2]
          Length = 325

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  ++YD I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTYDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|228993866|ref|ZP_04153769.1| Thioredoxin reductase [Bacillus pseudomycoides DSM 12442]
 gi|228765817|gb|EEM14468.1| Thioredoxin reductase [Bacillus pseudomycoides DSM 12442]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|94499328|ref|ZP_01305866.1| hypothetical protein RED65_11079 [Oceanobacter sp. RED65]
 gi|94428960|gb|EAT13932.1| hypothetical protein RED65_11079 [Oceanobacter sp. RED65]
          Length = 662

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           +VI++G G AGC  A   AK G    LI  K   I       A G
Sbjct: 267 NVIIVGAGIAGCSTAYSLAKRGYKVTLIE-KQEGIAMGGSGNAQG 310


>gi|90416751|ref|ZP_01224681.1| probable alkyl hydroperoxide reductase subunit F [marine gamma
           proteobacterium HTCC2207]
 gi|90331504|gb|EAS46740.1| probable alkyl hydroperoxide reductase subunit F [marine gamma
           proteobacterium HTCC2207]
          Length = 538

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG------SMSCNPAIGGLGKGHLVR 60
           DV VIGGG++G EAA   A +  S  +                    P I  + K    +
Sbjct: 357 DVAVIGGGNSGIEAALDLAGMVKSVNVFEFMPDLKADQILIDKAVAKPNI-TIHKNVATK 415

Query: 61  EIDALDGLM--GRVADAAGIQFRVL 83
           EI A +G +      D A      L
Sbjct: 416 EISATNGKVSAIEYIDRATDTEHSL 440


>gi|15899481|ref|NP_344086.1| thioredoxin reductase (trxB-2) [Sulfolobus solfataricus P2]
 gi|13816100|gb|AAK42876.1| Thioredoxin reductase (trxB-2) [Sulfolobus solfataricus P2]
          Length = 325

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  ++YD I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTYDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|74203133|dbj|BAE26252.1| unnamed protein product [Mus musculus]
          Length = 737

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 577 ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 636

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 637 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 689

Query: 548 RQMIEA---KEIKFEEKRL 563
            Q  +    +  K EE+  
Sbjct: 690 NQEKKIDYFERAKREEELR 708


>gi|19551918|ref|NP_599920.1| flavoprotein disulfide reductase [Corynebacterium glutamicum ATCC
          13032]
 gi|62389577|ref|YP_224979.1| flavoprotein disulfide reductase [Corynebacterium glutamicum ATCC
          13032]
 gi|21323454|dbj|BAB98081.1| Dihydrolipoamide dehydrogenase/glutathione oxidoreductase and
          related enzymes [Corynebacterium glutamicum ATCC 13032]
 gi|41324912|emb|CAF19393.1| DIHYDROLIPOAMIDE DEHYDROGENASE [Corynebacterium glutamicum ATCC
          13032]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   +I
Sbjct: 5  IVIIGGGPAGYEAALAGAKYGAEVTVI 31


>gi|304321263|ref|YP_003854906.1| putative glutathione reductase [Parvularcula bermudensis HTCC2503]
 gi|303300165|gb|ADM09764.1| putative glutathione reductase [Parvularcula bermudensis HTCC2503]
          Length = 457

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD+ VIG G  G  AA  +AK GA  A+          +     I G     L+  
Sbjct: 1   MAYDYDLFVIGAGSGGVRAANRSAKFGAKVAIAEQ-----ADVGGTCVIRGCVPKKLMVY 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
               + ++G   DAAG  + + + +   A    R Q +         + +     + + Q
Sbjct: 56  ASEFNDMIG---DAAGYGWEIPDARFDWATLRDRIQTELGRLSSLYIKGLEGN-GVTLFQ 111


>gi|327474256|gb|EGF19663.1| pyruvate dehydrogenase complex E3 component [Streptococcus
           sanguinis SK408]
          Length = 222

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 4   YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 63

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   +   ++        L           ++ I
Sbjct: 64  EARRYG----IESKLERIDFEKLVDRKNQVIASLQSGIHASFKSL----------GIEYI 109

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           +G+          +      +   I    V+L TG++
Sbjct: 110 EGQAKFVKDRTFSV------NGKEISGKDVILATGSY 140


>gi|326512382|dbj|BAJ99546.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 420

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 8/158 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++ G G AG   A    + G  + ++                      +  R +DAL 
Sbjct: 13  DIVIAGAGLAGLAVALGLHRKGVRSVVLESSPDR-----RTSGFAFFTWTNAFRALDALG 67

Query: 67  -GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV- 124
            G   R      +  RV++   G   R    + + +L    + R +     L  ++ E+ 
Sbjct: 68  VGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEV-RCVQRNVLLQALEDELP 126

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
                  + I SI  QD        + L  G+ LR  +
Sbjct: 127 PDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKV 164


>gi|302681769|ref|XP_003030566.1| hypothetical protein SCHCODRAFT_69018 [Schizophyllum commune
          H4-8]
 gi|300104257|gb|EFI95663.1| hypothetical protein SCHCODRAFT_69018 [Schizophyllum commune
          H4-8]
          Length = 578

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          VIV+GGG AG  AA    + GA+  L        G M  N      G
Sbjct: 4  VIVVGGGLAGLSAAHTLLERGANVLL----LDKQGFMGGNSTKATSG 46


>gi|302345526|ref|YP_003813879.1| thiazole biosynthesis enzyme [Prevotella melaninogenica ATCC
          25845]
 gi|302149403|gb|ADK95665.1| thiazole biosynthesis enzyme [Prevotella melaninogenica ATCC
          25845]
          Length = 257

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV ++GGG +G  AA   AK G  TAL   K S
Sbjct: 25 DVAIVGGGPSGIVAAYYLAKAGLKTALFDRKLS 57


>gi|228999902|ref|ZP_04159474.1| Thioredoxin reductase [Bacillus mycoides Rock3-17]
 gi|229007455|ref|ZP_04165052.1| Thioredoxin reductase [Bacillus mycoides Rock1-4]
 gi|228753843|gb|EEM03284.1| Thioredoxin reductase [Bacillus mycoides Rock1-4]
 gi|228759844|gb|EEM08818.1| Thioredoxin reductase [Bacillus mycoides Rock3-17]
          Length = 318

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|170097978|ref|XP_001880208.1| fumarate reductase [Laccaria bicolor S238N-H82]
 gi|164644646|gb|EDR08895.1| fumarate reductase [Laccaria bicolor S238N-H82]
          Length = 584

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          VIV+GGG AG  AA    + GA+  L        G M  N      G
Sbjct: 4  VIVVGGGLAGLSAAHTLLERGANVLL----LDKQGFMGGNSTKATSG 46


>gi|146275842|ref|YP_001166002.1| NADH:flavin oxidoreductase/NADH oxidase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322533|gb|ABP64476.1| NADH:flavin oxidoreductase/NADH oxidase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 711

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 1/159 (0%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG  G E+A   A LG    LI  K+  +G      ++       ++  +     
Sbjct: 409 VAVIGGGPGGMESARRLAALGHKVTLIE-KSDRLGGTLRFASLAYEPNERILEWLRREVK 467

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
             G     + +    L    G       T A R++  +    +       D+ +  +   
Sbjct: 468 EAGIDVRLSTVATPDLLRSIGADAVIVATGAIRDMPPIPGNDQDHVYSGDDMRRMMLGES 527

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           + E    + +  +  + +  +T        +R   H   
Sbjct: 528 SEELKRKTGLFTRIATKVGAATGATANLALVRKATHAWM 566


>gi|157960169|ref|YP_001500203.1| flavocytochrome c [Shewanella pealeana ATCC 700345]
 gi|157845169|gb|ABV85668.1| flavocytochrome c [Shewanella pealeana ATCC 700345]
          Length = 500

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-------IGSMSCNPAIGGLGK 55
           +R YD+I++G G AG  AA  A K G    LI  K  T        G ++C P      K
Sbjct: 33  DREYDLIIVGSGFAGLAAAYSANKAGLKNILILEKMETWGGNSAICGGIACMPNTSLQKK 92

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG 93
             +    +    LM +    AG  F    + K  A   
Sbjct: 93  HGIEDSAE----LMIKDMVKAGRGFNHPELCKTLATEA 126


>gi|332686442|ref|YP_004456216.1| dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
          [Melissococcus plutonius ATCC 35311]
 gi|332370451|dbj|BAK21407.1| dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
          [Melissococcus plutonius ATCC 35311]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVRE 61
          D IVIG G  G  AA  AA++G   A+I      IG    ++ C P+   +  GH  RE
Sbjct: 11 DTIVIGAGPGGYVAAIRAAEMGQKVAIIE--REYIGGVCLNVGCIPSKALIAAGHHYRE 67


>gi|320540246|ref|ZP_08039900.1| putative predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Serratia symbiotica str. Tucson]
 gi|320029712|gb|EFW11737.1| putative predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Serratia symbiotica str. Tucson]
          Length = 399

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            ++V+VIG G AG   AA A +LG    L+
Sbjct: 2  EQFEVVVIGAGAAGMFCAAQAGQLGCRVLLL 32


>gi|310640134|ref|YP_003944892.1| dihydrolipoyl dehydrogenase [Paenibacillus polymyxa SC2]
 gi|309245084|gb|ADO54651.1| Dihydrolipoyl dehydrogenase [Paenibacillus polymyxa SC2]
          Length = 561

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIGSMSCNPAIGGLGKG 56
           ++++ D+++IG G  G  AA  AAK G   AL+           +G +     +      
Sbjct: 96  LDKNVDLLIIGAGPGGYVAAIYAAKKGIKVALVEKEELGGTCLNVGCIPTKSLVKSSEIC 155

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVK---KGPAVRGPRTQADRELYRLAMQREILS 113
           H ++E        G   D      +V+  K   KG  + G     ++             
Sbjct: 156 HHIKESSLFGIHTG--TDLQVDMKQVIRRKDEIKGKLISGIDYLMEKN------------ 201

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             N+++I+G+ A  +  +  +     Q +  +  + +++ TG+
Sbjct: 202 --NIEIIRGQAAFLSATQVSVKG---QRHYQVTANDIIIATGS 239


>gi|262369424|ref|ZP_06062752.1| succinate dehydrogenase [Acinetobacter johnsonii SH046]
 gi|262315492|gb|EEY96531.1| succinate dehydrogenase [Acinetobacter johnsonii SH046]
          Length = 632

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 HETFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|262375853|ref|ZP_06069085.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          lwoffii SH145]
 gi|262309456|gb|EEY90587.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          lwoffii SH145]
          Length = 632

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 HETFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|256830113|ref|YP_003158841.1| response regulator receiver protein [Desulfomicrobium baculatum
          DSM 4028]
 gi|256579289|gb|ACU90425.1| response regulator receiver protein [Desulfomicrobium baculatum
          DSM 4028]
          Length = 1143

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + Y  +V+G G AG  AA   A  G   ALI
Sbjct: 1  MRKQYGALVVGAGIAGIRAALDLAVTGHKVALI 33


>gi|126178308|ref|YP_001046273.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Methanoculleus marisnigri JR1]
 gi|125861102|gb|ABN56291.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Methanoculleus marisnigri JR1]
          Length = 456

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDV+VIG G+AG + A    K G   A++
Sbjct: 1  MEREYDVVVIGTGNAGSDIAWHCRKAGMQVAIV 33


>gi|110679087|ref|YP_682094.1| sarcosine oxidase, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109455203|gb|ABG31408.1| sarcosine oxidase, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 975

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           D++VIG G AG  AA  A + GA   L              P      + H V E+
Sbjct: 167 DLLVIGAGPAGLMAALTAGRAGADVIL--------ADEDSLPGGRLNAETHTVEEM 214


>gi|110680193|ref|YP_683200.1| dihydrolipoamide dehydrogenase [Roseobacter denitrificans OCh 114]
 gi|109456309|gb|ABG32514.1| dihydrolipoamide dehydrogenase [Roseobacter denitrificans OCh 114]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 23/165 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M ++S+D+IVIG G  G  AA   A+LG S A++       I    G +     +     
Sbjct: 1   MASKSFDLIVIGAGPGGYVAAIRGAQLGMSVAIVEREHLGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL++      GL     D       V+   +  A +                  ++ + 
Sbjct: 61  FHLMQRAKEF-GLKAEKVD--YDLDAVVKRSRKVAGQLSGG-----------IGHLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
            + V  GE       K  +S +     +  +    +VL TG   R
Sbjct: 107 KVTVFMGEAK--LAGKGKVS-VKTDKGAEDLTAKNIVLATGARAR 148


>gi|58613585|gb|AAW79379.1| probable fumerate reductase [Heterocapsa triquetra]
          Length = 405

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          VIV+GGG AG  AA  A + G  T L+
Sbjct: 10 VIVVGGGLAGMSAANQAVECGGKTVLL 36


>gi|15605704|ref|NP_213081.1| hypothetical protein aq_121 [Aquifex aeolicus VF5]
 gi|2982862|gb|AAC06483.1| hypothetical protein aq_121 [Aquifex aeolicus VF5]
          Length = 342

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           YDV ++G G  G   A V AK G    LI  +      + C
Sbjct: 2  KYDVAIVGAGPGGSTCAYVLAKKGVRVLLIDSRKEVGYPVQC 43


>gi|311106072|ref|YP_003978925.1| FAD dependent oxidoreductase [Achromobacter xylosoxidans A8]
 gi|310760761|gb|ADP16210.1| FAD dependent oxidoreductase family protein 6 [Achromobacter
           xylosoxidans A8]
          Length = 471

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE--ID 63
           DV+++G G  G  AA   A+  G    ++    +  G  S N   G    G L R   I 
Sbjct: 66  DVVIVGSGFTGLSAALTLARDFGVKAVVLEANRAVWGCTSRNGGQGQNASGRLYRSQWIA 125

Query: 64  ALDGLMGRVADA 75
                  +  DA
Sbjct: 126 RWGLATAKRLDA 137


>gi|307330460|ref|ZP_07609603.1| glycine oxidase ThiO [Streptomyces violaceusniger Tu 4113]
 gi|306883885|gb|EFN14928.1| glycine oxidase ThiO [Streptomyces violaceusniger Tu 4113]
          Length = 391

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 57/214 (26%), Gaps = 57/214 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------------------------- 34
           +   YDV+VIGGG  G   A  AA+ G  TAL                            
Sbjct: 1   MGGPYDVLVIGGGIIGLVTAWRAAQRGLRTALADPAPGGGAAWVAAGMLAAVTELHYGEQ 60

Query: 35  THKTSTIGSMSCNPAI------------GGLGKGHL-----------VREIDAL-DGLMG 70
           T     + S    P              G    G L           +RE+     GL  
Sbjct: 61  TLLGLNLASAHRYPDFVAELEEASGQDVGHRSCGTLAVAFDADDRAHLRELHTFQQGLGL 120

Query: 71  RVADAAGIQFRVLNVKKGPAVRG-----PRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                 G + R L     P V G        Q D      A+      +  +   +    
Sbjct: 121 ESEWLTGRECRRLEPMLAPGVHGGLRVSGDNQVDPRRLAAALLTACE-RAGVAFHRARAE 179

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               + +  + I +   + +     VL  G+   
Sbjct: 180 RLLLDGDRATGIELTGGTRLAAERTVLAGGSLSG 213


>gi|288818516|ref|YP_003432864.1| dihydrolipoyl dehydrogenase [Hydrogenobacter thermophilus TK-6]
 gi|288787916|dbj|BAI69663.1| dihydrolipoyl dehydrogenase [Hydrogenobacter thermophilus TK-6]
 gi|308752106|gb|ADO45589.1| dihydrolipoamide dehydrogenase [Hydrogenobacter thermophilus
          TK-6]
          Length = 465

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +D++++G G  G EA   A + G   AL+     ++G
Sbjct: 3  FDLVIVGAGSGGYEAGLYAHRRGMKVALVELSPESVG 39


>gi|323525735|ref|YP_004227888.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1001]
 gi|323382737|gb|ADX54828.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1001]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|237744825|ref|ZP_04575306.1| thioredoxin reductase [Fusobacterium sp. 7_1]
 gi|229432054|gb|EEO42266.1| thioredoxin reductase [Fusobacterium sp. 7_1]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDVI++G G AG  A   A +   ST ++      IGSM     I      H+   
Sbjct: 4  MEKIYDVIIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSMIMTHQIDNYPGSHIGAS 61

Query: 62 IDALDGLMGRVADAAGIQFR 81
             +   M + A   G + R
Sbjct: 62 GKEIYDTMKKQALDFGCEIR 81


>gi|254461262|ref|ZP_05074678.1| trimethylamine dehydrogenase [Rhodobacterales bacterium HTCC2083]
 gi|206677851|gb|EDZ42338.1| trimethylamine dehydrogenase [Rhodobacteraceae bacterium HTCC2083]
          Length = 689

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           +V+VIG G AG EAA   A+ G   AL
Sbjct: 389 NVLVIGAGPAGLEAARAVAERGYDVAL 415


>gi|145294861|ref|YP_001137682.1| flavoprotein disulfide reductase [Corynebacterium glutamicum R]
 gi|140844781|dbj|BAF53780.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 469

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   +I
Sbjct: 5  IVIIGGGPAGYEAALAGAKYGAEVTVI 31


>gi|54020431|ref|YP_115794.1| thioredoxin reductase [Mycoplasma hyopneumoniae 232]
 gi|71893454|ref|YP_278900.1| thioredoxin reductase [Mycoplasma hyopneumoniae J]
 gi|72080440|ref|YP_287498.1| thioredoxin reductase [Mycoplasma hyopneumoniae 7448]
 gi|53987604|gb|AAV27805.1| thioredoxin reductase [Mycoplasma hyopneumoniae 232]
 gi|71851581|gb|AAZ44189.1| thioredoxin reductase [Mycoplasma hyopneumoniae J]
 gi|71913564|gb|AAZ53475.1| thioredoxin reductase [Mycoplasma hyopneumoniae 7448]
          Length = 305

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVI+IG G AG   A  A++      ++
Sbjct: 2  ENYDVIIIGAGPAGLTTALYASRGNLKVLIL 32


>gi|323486948|ref|ZP_08092263.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
          symbiosum WAL-14163]
 gi|323399720|gb|EGA92103.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
          symbiosum WAL-14163]
          Length = 439

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V +IG G +G  AA  AA+ GA   L+ H    +G         G GK +L       + 
Sbjct: 35 VTIIGAGASGMTAAIFAARQGAQVTLLEH-MDRVG---KKILSTGNGKCNL------SNR 84

Query: 68 LMGRVADAAGIQ 79
           MG     +G+ 
Sbjct: 85 FMGETCYRSGVA 96


>gi|307730017|ref|YP_003907241.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1003]
 gi|307584552|gb|ADN57950.1| dihydrolipoamide dehydrogenase [Burkholderia sp. CCGE1003]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|238927119|ref|ZP_04658879.1| thioredoxin-disulfide reductase [Selenomonas flueggei ATCC 43531]
 gi|238885099|gb|EEQ48737.1| thioredoxin-disulfide reductase [Selenomonas flueggei ATCC 43531]
          Length = 542

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          YD +++GGG AG  AA   A+      +I      IG
Sbjct: 2  YDAVIVGGGPAGLSAAIYLARAKCKVLVIE--KDKIG 36


>gi|159899334|ref|YP_001545581.1| FAD dependent oxidoreductase [Herpetosiphon aurantiacus ATCC
          23779]
 gi|159892373|gb|ABX05453.1| FAD dependent oxidoreductase [Herpetosiphon aurantiacus ATCC
          23779]
          Length = 522

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          SYDV+VIG GH    AAA  A+ G S  ++ +    IG +   
Sbjct: 3  SYDVVVIGSGHNALIAAAYLARAGKSVLVLENN-DRIGGLVRT 44


>gi|157364311|ref|YP_001471078.1| hypothetical protein Tlet_1458 [Thermotoga lettingae TMO]
 gi|157314915|gb|ABV34014.1| protein of unknown function DUF1667 [Thermotoga lettingae TMO]
          Length = 537

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIG G AG  AA  A   GA   ++
Sbjct: 3  DYDVLVIGAGPAGLSAAVSANNFGAKVLVV 32


>gi|118465120|ref|YP_884030.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium avium
          104]
 gi|254777348|ref|ZP_05218864.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium avium
          subsp. avium ATCC 25291]
 gi|118166407|gb|ABK67304.1| succinate dehydrogenase [Mycobacterium avium 104]
          Length = 646

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +YDV+VIG G AG  A   A + G   A++       G      A GG    
Sbjct: 7  HAYDVVVIGAGGAGLRAVIEARERGLRVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|83592540|ref|YP_426292.1| succinate dehydrogenase flavoprotein subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|3273341|dbj|BAA31212.1| succinate dehydrogenase flavoprotein subunit [Rhodospirillum
           rubrum]
 gi|83575454|gb|ABC22005.1| succinate dehydrogenase subunit A [Rhodospirillum rubrum ATCC
           11170]
          Length = 594

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 73/256 (28%), Gaps = 64/256 (25%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-- 58
           +++  YD +V+G G AG  A     + G  TA IT    T           G   G++  
Sbjct: 6   IVDHEYDALVVGAGGAGLRATFGLVEQGLKTACITKVFPTRSHTVAAQGGIGAALGNMAE 65

Query: 59  ---------------------------------VREIDALDGLMGRVAD------AAGIQ 79
                                            V E++       R  D        G  
Sbjct: 66  DNWKWHMYDTVKGADWLGDQDAIEYMCREAIPAVYELEHYGVPFSRTEDGRIYQRPFGGH 125

Query: 80  FRVLNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFNTEKN 132
            R  N  + P  R     ADR        LY+ +++           ++        E  
Sbjct: 126 MR--NFGEAPVQRACAA-ADRTGHAILQTLYQQSLRFNAE-----FFVEYFALDLIIEDG 177

Query: 133 IISSIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAGR-MGDSPSNSLFNSF 186
           +   ++   M+D ++   +  T VL TG + R            G   G      L    
Sbjct: 178 VCRGVIAWCMEDGTIHRFKSHTTVLATGGYGRAYFSCTSAHTCTGDGNGMVARAGLPLQD 237

Query: 187 MKF--DFDTGRLKTGT 200
           M+F     TG    G 
Sbjct: 238 MEFVQFHPTGIYGAGC 253


>gi|88808504|ref|ZP_01124014.1| geranylgeranyl hydrogenase [Synechococcus sp. WH 7805]
 gi|88787492|gb|EAR18649.1| geranylgeranyl hydrogenase [Synechococcus sp. WH 7805]
          Length = 457

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA + AK G ST L   K     +  C    GG     +V E D  + 
Sbjct: 4   VAVVGGGPSGSCAAEILAKAGISTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68  LMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILS 113
               + D      ++++   K   ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNKEVDIQLDPLGYDDNAYIGMCRREVFD 100


>gi|283782401|ref|YP_003373156.1| sarcosine oxidase [Pirellula staleyi DSM 6068]
 gi|283440854|gb|ADB19296.1| Sarcosine oxidase [Pirellula staleyi DSM 6068]
          Length = 394

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           +DVIV+G G  G  AA   A+ G    
Sbjct: 3  QFDVIVVGTGAMGSAAAMQLARRGRKVL 30


>gi|317152494|ref|YP_004120542.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942745|gb|ADU61796.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 676

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+V+G G AG +AA   AK G    L+    S  G M
Sbjct: 143 DVMVVGAGIAGIQAALDIAKSGHRVHLVEKAPSIGGHM 180


>gi|312198438|ref|YP_004018499.1| FAD dependent oxidoreductase [Frankia sp. EuI1c]
 gi|311229774|gb|ADP82629.1| FAD dependent oxidoreductase [Frankia sp. EuI1c]
          Length = 537

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLVREIDAL 65
           DV+VIGGGH G   AA  A+ G S  ++  +    G  S   AIG      +    +   
Sbjct: 23  DVVVIGGGHNGLACAAYLARAGRSVVVLEARGQAGGCASTVDAIGARVNICNCDHTMIRA 82

Query: 66  DGLMGRVADAAGIQFRVLNV 85
            G++    D A    R L+V
Sbjct: 83  SGIV-EELDLAAHGLRYLDV 101


>gi|78212413|ref|YP_381192.1| dihydrolipoamide dehydrogenase [Synechococcus sp. CC9605]
 gi|78196872|gb|ABB34637.1| putative dihydrolipoamide dehydrogenase [Synechococcus sp.
          CC9605]
          Length = 480

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G   A++       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAAEHGLKAAIVE-SRDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 I 62
          +
Sbjct: 66 L 66


>gi|70725224|ref|YP_252138.1| hypothetical protein SH0223 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68445948|dbj|BAE03532.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 450

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
          +  SYD+IV+G G  G  AA  AA+LG    ++    +      +G +     +    K 
Sbjct: 1  MTDSYDLIVVGAGPGGYVAAIRAAQLGQKVGIVEKTNAGGTCLNVGCIPSKTLLEHGTKA 60

Query: 57 HLVREIDALD 66
          H +R+ +   
Sbjct: 61 HDIRKANDWG 70


>gi|327334510|gb|EGE76221.1| thioredoxin-disulfide reductase [Propionibacterium acnes HL097PA1]
          Length = 350

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 41/171 (23%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +   DVI++G G AG  AA   A+ G    +        G++     +          E 
Sbjct: 41  DEPRDVIIVGSGPAGYTAAVYTARAGLKPLVFEGSIDAGGALMQTTEVENY---PGFSEG 97

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                LM ++                      R QA+R                 +++  
Sbjct: 98  IMGPDLMAQM----------------------RAQAERF--------------GAELVAD 121

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           ++   +     +  +V  D ++ +   V+L  G+  R  + +      +GR
Sbjct: 122 DITDIDLTG-EVKKLVDTDGNIYKARVVILAMGSAYR-KLGLEDEPRLSGR 170


>gi|327192092|gb|EGE59070.1| pyridine nucleotide transhydrogenase protein [Rhizobium etli
          CNPAF512]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 3  QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|327189060|gb|EGE56246.1| putative FAD-dependent oxidoreductase protein [Rhizobium etli
           CNPAF512]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV +IG G  G  AA   AK G    ++  +    G+   N      G  H      A
Sbjct: 69  HYDVAIIGAGFTGLAAARQLAKAGVKVIVLEGERVGWGASGRNGGHLNNGLAHSFLSAKA 128

Query: 65  LDGL 68
             G+
Sbjct: 129 ALGV 132


>gi|310796260|gb|EFQ31721.1| FAD binding domain-containing protein [Glomerella graminicola
          M1.001]
          Length = 679

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV++IG G AG   A   ++LG  T ++  +TS I          G   G  VR ++ LD
Sbjct: 10 DVLIIGAGPAGLMLALWLSRLGVKTRIVDKRTSRI--------YSGQADGFQVRTLEILD 61

Query: 67 GL-MGRVADAAGIQF 80
             +G        + 
Sbjct: 62 SFGVGERVWKEANRM 76


>gi|309355736|emb|CAP38335.2| hypothetical protein CBG_21577 [Caenorhabditis briggsae AF16]
          Length = 495

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 28/190 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLV 59
            +  D++VIGGG  G  AA  AA+LG  T  +    +  G+   + C P+   L   HL+
Sbjct: 27  TQDADLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKALLNNSHLL 86

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRTQA---DRELYRLAMQREILSQ- 114
               A      R  D        LN+ K   A      Q     ++L++      +    
Sbjct: 87  H--QAQHDFAARGIDCTAS----LNLPKMMEAKATSVKQLTGGIKQLFKANKVGHVEGFG 140

Query: 115 ----ENLDVIQ-----GEVAGFNTEKNIISSI--VMQD-NSMIRCSTVVLTTGTFLRGVI 162
                N   +Q     G V   N    +I+S   V       I   ++V +TG    G +
Sbjct: 141 TIVGPNT--VQAKKADGSVETINARNILIASGSEVTPFPGITIDEQSIVSSTGALSLGQV 198

Query: 163 HIGKLKIPAG 172
               + I AG
Sbjct: 199 PKKMVVIGAG 208


>gi|291561698|emb|CBL40497.1| thioredoxin-disulfide reductase [butyrate-producing bacterium
           SS3/4]
          Length = 421

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+IV+GGG  G  AA  AA+ G +T ++
Sbjct: 119 YDMIVVGGGPGGYTAALYAARAGMNTVVL 147


>gi|317051435|ref|YP_004112551.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurispirillum indicum S5]
 gi|316946519|gb|ADU65995.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurispirillum indicum S5]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YD+IVIG G AG  AA  A KLG    ++      +G    N    G      +RE
Sbjct: 1  MAYQYDLIVIGSGPAGLNAALEAVKLGKKILVV----EEMGFEGGNYLHNGTIPSKTLRE 56


>gi|283784433|ref|YP_003364298.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Citrobacter rodentium ICC168]
 gi|282947887|emb|CBG87449.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Citrobacter rodentium ICC168]
          Length = 391

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 11/170 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG----GLGKG 56
           M N+  +V ++GGG  G   A   A+ G +  +I H           P +          
Sbjct: 1   MTNQPTEVAIVGGGMVGGALALGLAQHGFAVTVIEHAAPAPFVAGSQPDVRISAISAASV 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQR 109
            L++E+   D + G  +                A      +     Y       + A+ +
Sbjct: 61  SLLKELGVWDAVQGMRSHPYRRLETWEWESAHVAFDAAELKLPLLGYMVENSVLQQALWQ 120

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            + +  N+ + +          +    + + D   +    VV   G   R
Sbjct: 121 ALAAHPNVTLREPASLMALHRHHDGYELELADGERLAAKLVVGADGANSR 170


>gi|317153055|ref|YP_004121103.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio aespoeensis Aspo-2]
 gi|316943306|gb|ADU62357.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio aespoeensis Aspo-2]
          Length = 303

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMS-----CNPAIGGLGKG 56
          + +YDV+++G G AG +A   AA+    T ++     S++         C   + G    
Sbjct: 4  HETYDVVILGSGPAGLQAGIHAARKNVRTLMLGRMDNSSLYWAHIENYCCQFKVSGEEVL 63

Query: 57 HLVRE-IDALDGL 68
          +  RE ++A  G 
Sbjct: 64 NTGREQVEAFGGE 76


>gi|289432431|ref|YP_003462304.1| thioredoxin reductase [Dehalococcoides sp. GT]
 gi|288946151|gb|ADC73848.1| thioredoxin reductase [Dehalococcoides sp. GT]
          Length = 306

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI+IGGG AG  AA    +    T +I
Sbjct: 1  MSTLLYDVIIIGGGPAGLTAALYTGRSKLKTLVI 34


>gi|302525502|ref|ZP_07277844.1| succinate dehydrogenase, flavoprotein subunit [Streptomyces sp.
          AA4]
 gi|302434397|gb|EFL06213.1| succinate dehydrogenase, flavoprotein subunit [Streptomyces sp.
          AA4]
          Length = 638

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           SYDV+VIG G AG  A   A + G S A++       G      A GG    
Sbjct: 7  HSYDVVVIGAGGAGLRAVIEARERGFSVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|238027574|ref|YP_002911805.1| dihydrolipoamide dehydrogenase [Burkholderia glumae BGR1]
 gi|237876768|gb|ACR29101.1| Dihydrolipoamide dehydrogenase [Burkholderia glumae BGR1]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A++
Sbjct: 1  MSKEFDVVVIGAGPGGYVAAIRAAQLGKTVAVV 33


>gi|229823563|ref|ZP_04449632.1| hypothetical protein GCWU000282_00861 [Catonella morbi ATCC
          51271]
 gi|229787007|gb|EEP23121.1| hypothetical protein GCWU000282_00861 [Catonella morbi ATCC
          51271]
          Length = 310

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIG G AG  AA  A++    T +I
Sbjct: 9  DVVVIGAGPAGMTAALYASRANLKTHMI 36


>gi|255017776|ref|ZP_05289902.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          F2-515]
          Length = 181

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFSKAQEWKGGVV 96


>gi|224475906|ref|YP_002633512.1| putative thioredoxine reductase [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420513|emb|CAL27327.1| putative thioredoxine reductase [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 317

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV++IG G AG  AA  A++    T +I
Sbjct: 7  DYDVVIIGAGPAGMTAAVYASRADLKTLMI 36


>gi|190891535|ref|YP_001978077.1| pyridine nucleotide transhydrogenase [Rhizobium etli CIAT 652]
 gi|190696814|gb|ACE90899.1| pyridine nucleotide transhydrogenase protein [Rhizobium etli CIAT
          652]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 3  QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|116788504|gb|ABK24903.1| unknown [Picea sitchensis]
          Length = 529

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           DVI++G G AG   A    K G    +I         I      P     +  LG    V
Sbjct: 58  DVIIVGAGVAGSALAYTLGKDGRRIHIIERDLSEPDRIVGELLQPGGYLKLIELGLQDCV 117

Query: 60  REIDALDGLMGRVADAAGIQFRVLN-VKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
             IDA   +MG      G   +V   ++   A    R+      +   M+ +  S   + 
Sbjct: 118 EGIDAQ-RIMGYALFKEGKDTKVAYPLEDHHADVSGRS-FHNGRFIQRMREKAASLPTVH 175

Query: 119 VIQGEVAGFNTEKNIISSIV 138
           + QG V     +  ++  + 
Sbjct: 176 LEQGTVLSLIEKDGVVKGVK 195


>gi|154281317|ref|XP_001541471.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411650|gb|EDN07038.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1046

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 16/135 (11%)

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +   +  +     +  ++   L  K L       K    +    + L         L  +
Sbjct: 648 EHLERERKRMKDEKDRIRQEELK-KQLEELKTGVKGIDVSEINLDELDSNSLRHIKLAQL 706

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             +  + +     R++I +    +  R        + EE + +P   DY +   L  E+ 
Sbjct: 707 EKEKNELND----RVRITAKRIDHLER------AYRREELKHLPA--DYEAQRKLDLEVY 754

Query: 582 EKLSILKPFNLLQAS 596
           EK +      L  A 
Sbjct: 755 EK-NKA--DTLAAAK 766


>gi|187923634|ref|YP_001895276.1| dihydrolipoamide dehydrogenase [Burkholderia phytofirmans PsJN]
 gi|187714828|gb|ACD16052.1| dihydrolipoamide dehydrogenase [Burkholderia phytofirmans PsJN]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|73993084|dbj|BAE43555.1| putative lycopene beta cyclase [Taxodium distichum var. imbricatum]
          Length = 525

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 25/192 (13%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +V+GGG AG   A   ++ G S   I           C  +I     G  V E +A+D L
Sbjct: 112 VVVGGGPAGLAVAQQVSEAGISVCCID---------PCPESIWPNNYGVWVDEFEAMDLL 162

Query: 69  MGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                  +G    V +  K     P  R  R    R+L    M++ I +   +   + +V
Sbjct: 163 DCLDTTWSGAVVYVDDKTKKFLDRPYGRVNR----RQLKSKMMRKCIAN--GVQFHRAKV 216

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
                E +  S ++  D   ++ S V+  TG F R ++   K   P           L  
Sbjct: 217 KQVVHEGSK-SMVLCTDGVALQASVVLDATG-FSRCLVEYDK---PYDPGYQVAYGILAE 271

Query: 185 SFMKFDFDTGRL 196
              +  FD  ++
Sbjct: 272 VD-EHPFDVDKM 282


>gi|73748383|ref|YP_307622.1| thioredoxin reductase [Dehalococcoides sp. CBDB1]
 gi|73660099|emb|CAI82706.1| thioredoxin reductase [Dehalococcoides sp. CBDB1]
          Length = 306

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI+IGGG AG  AA    +    T +I
Sbjct: 1  MSTLLYDVIIIGGGPAGLTAALYTGRSKLKTLVI 34


>gi|268535042|ref|XP_002632654.1| Hypothetical protein CBG21577 [Caenorhabditis briggsae]
          Length = 464

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 28/190 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLV 59
            +  D++VIGGG  G  AA  AA+LG  T  +    +  G+   + C P+   L   HL+
Sbjct: 27  TQDADLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKALLNNSHLL 86

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKK-GPAVRGPRTQA---DRELYRLAMQREILSQ- 114
               A      R  D        LN+ K   A      Q     ++L++      +    
Sbjct: 87  H--QAQHDFAARGIDCTAS----LNLPKMMEAKATSVKQLTGGIKQLFKANKVGHVEGFG 140

Query: 115 ----ENLDVIQ-----GEVAGFNTEKNIISSI--VMQD-NSMIRCSTVVLTTGTFLRGVI 162
                N   +Q     G V   N    +I+S   V       I   ++V +TG    G +
Sbjct: 141 TIVGPNT--VQAKKADGSVETINARNILIASGSEVTPFPGITIDEQSIVSSTGALSLGQV 198

Query: 163 HIGKLKIPAG 172
               + I AG
Sbjct: 199 PKKMVVIGAG 208


>gi|147669163|ref|YP_001213981.1| thioredoxin reductase [Dehalococcoides sp. BAV1]
 gi|146270111|gb|ABQ17103.1| thioredoxin reductase [Dehalococcoides sp. BAV1]
          Length = 306

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI+IGGG AG  AA    +    T +I
Sbjct: 1  MSTLLYDVIIIGGGPAGLTAALYTGRSKLKTLVI 34


>gi|85705379|ref|ZP_01036478.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseovarius sp. 217]
 gi|85670252|gb|EAQ25114.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseovarius sp. 217]
          Length = 659

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
           V+V+G G AG EAA VAA+ G    L        G 
Sbjct: 388 VLVVGAGPAGLEAARVAAERGHRVQLHEAGPEMGGQ 423


>gi|84685480|ref|ZP_01013378.1| 2,4-dienoyl-CoA reductase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666637|gb|EAQ13109.1| 2,4-dienoyl-CoA reductase [Rhodobacterales bacterium HTCC2654]
          Length = 675

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + V+G G AG  AA  AA+ G    L   K   IG
Sbjct: 377 IAVVGAGPAGLSAALTAAERGHKVTLFD-KADRIG 410


>gi|330967686|gb|EGH67946.1| hypothetical protein PSYAC_24198 [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 424

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V +IGGG AG  AA V ++ G    L       + S+     + G+G  ++    +A   
Sbjct: 24 VAIIGGGPAGLMAAEVLSQAGFKVDLY----DGMPSVGRKFLLAGVGGMNITHS-EAYPA 78

Query: 68 LMGRVADAAGIQFRVLNV 85
           +GR A+ + +   +L  
Sbjct: 79 FLGRYAERSTMIAPMLRA 96


>gi|323356220|gb|EGA88024.1| Bna4p [Saccharomyces cerevisiae VL3]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|323310140|gb|EGA63332.1| Bna4p [Saccharomyces cerevisiae FostersO]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|323306018|gb|EGA59752.1| Bna4p [Saccharomyces cerevisiae FostersB]
          Length = 476

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|296330313|ref|ZP_06872794.1| thioredoxin reductase [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305676082|ref|YP_003867754.1| thioredoxin reductase [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|296152581|gb|EFG93449.1| thioredoxin reductase [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305414326|gb|ADM39445.1| thioredoxin reductase [Bacillus subtilis subsp. spizizenii str.
          W23]
          Length = 316

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKVYDVIIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|259144746|emb|CAY77685.1| Bna4p [Saccharomyces cerevisiae EC1118]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|227529556|ref|ZP_03959605.1| thioredoxin-disulfide reductase [Lactobacillus vaginalis ATCC
          49540]
 gi|227350515|gb|EEJ40806.1| thioredoxin-disulfide reductase [Lactobacillus vaginalis ATCC
          49540]
          Length = 312

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1  MINRS-YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N+  YDV+VIG G  G  AA  A++   S  ++
Sbjct: 1  MANKDRYDVVVIGAGPGGMTAAMYASRANLSVLML 35


>gi|151946303|gb|EDN64525.1| Kynurenine 3-mono oxygenase [Saccharomyces cerevisiae YJM789]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|116251826|ref|YP_767664.1| soluble pyridine nucleotide transhydrogenase [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115256474|emb|CAK07558.1| putative soluble pyridine nucleotide transhydrogenase [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 468

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 3  QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|6319372|ref|NP_009454.1| Bna4p [Saccharomyces cerevisiae S288c]
 gi|586456|sp|P38169|KMO_YEAST RecName: Full=Kynurenine 3-monooxygenase; AltName:
           Full=Biosynthesis of nicotinic acid protein 4; AltName:
           Full=Kynurenine 3-hydroxylase
 gi|496675|emb|CAA56002.1| A-460 protein [Saccharomyces cerevisiae]
 gi|536162|emb|CAA84920.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|51013353|gb|AAT92970.1| YBL098W [Saccharomyces cerevisiae]
 gi|190408916|gb|EDV12181.1| kynurenine 3-mono oxygenase [Saccharomyces cerevisiae RM11-1a]
 gi|207347938|gb|EDZ73956.1| YBL098Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256271188|gb|EEU06273.1| Bna4p [Saccharomyces cerevisiae JAY291]
 gi|285810242|tpg|DAA07027.1| TPA: Bna4p [Saccharomyces cerevisiae S288c]
 gi|323334708|gb|EGA76081.1| Bna4p [Saccharomyces cerevisiae AWRI796]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  GC AA   +K G +  L   +       + N  +  +      R IDAL  
Sbjct: 5   VAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKS 64

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLA------MQREILSQENLDVIQ 121
           +     +        +   KG  +   + + + +LY L       + R +L+   LD ++
Sbjct: 65  IDPDACEHILQDMIPM---KGRMIHDLKGRQESQLYGLHGEAINSINRSVLNNSLLDELE 121

Query: 122 GEVAGFNTEKNIIS 135
                      ++ 
Sbjct: 122 KSTTELKFGHKLVK 135


>gi|148263335|ref|YP_001230041.1| dihydrolipoamide dehydrogenase [Geobacter uraniireducens Rf4]
 gi|146396835|gb|ABQ25468.1| dihydrolipoamide dehydrogenase [Geobacter uraniireducens Rf4]
          Length = 472

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
          M +  +D+IVIG G  G  AA  AA+LG   A++  ++  +G +     C P+   L   
Sbjct: 1  MPDEIFDLIVIGAGPGGYVAAIRAAQLGMRVAVVE-RSERLGGVCLNEGCIPSKALLDSS 59

Query: 57 HLVREIDALDGLMGRVADAAGIQFRVLNVKK 87
           L         L G   D   +    +  +K
Sbjct: 60 ELFVLARDRFSLHGIDIDPPKLNLARMMARK 90


>gi|332703004|ref|ZP_08423092.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553153|gb|EGJ50197.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 691

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           DV+V+G G AG +AA   AK G    L+             P+IGG
Sbjct: 143 DVLVVGAGIAGIQAALDVAKSGHRVHLVE----------RAPSIGG 178


>gi|226304945|ref|YP_002764903.1| sarcosine oxidase [Rhodococcus erythropolis PR4]
 gi|226184060|dbj|BAH32164.1| putative sarcosine oxidase [Rhodococcus erythropolis PR4]
          Length = 369

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          ++  +D IVIGGG  G  AA   A  G S      +    G   
Sbjct: 1  MSEIFDAIVIGGGLVGSSAAWRLAARGRSV----VQLEQFGPGH 40


>gi|297204477|ref|ZP_06921874.1| glycine/D-amino acid oxidase [Streptomyces sviceus ATCC 29083]
 gi|197715779|gb|EDY59813.1| glycine/D-amino acid oxidase [Streptomyces sviceus ATCC 29083]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          DV+VIGGG  G   A   A+ GA T L+       G+   N ++   G      E  
Sbjct: 27 DVVVIGGGLTGLSTAYHTARKGARTVLVEKDKVGSGASGRNGSMCTQGITISPAEAR 83


>gi|168042959|ref|XP_001773954.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674798|gb|EDQ61302.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 578

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGS---------MSCNPAIGG 52
           + S+DVIV+G G +G   A    K G S  +I  +    I              + ++G 
Sbjct: 169 DASFDVIVVGAGISGLSIAYNLLKAGKSVIVIESRVVEKINCNFSRVDGYLYPHDDSVGT 228

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREI 111
             K  L +E D     +G   D   +     +   G A+R P + Q D   Y   + + +
Sbjct: 229 RDK--LHKEFDVCK-KLGLNVDMVDLGKDPSSGGIGTAMRFPNSGQFDPIKYVNGLAKAV 285

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            S+    + +    G          +  +D  ++    VVL T T L     I   + P
Sbjct: 286 ASKGG-KIHETTKVGKIENNQ----VTTEDGIVVTGGDVVLATFTPLHREQLIHSFQQP 339


>gi|126740521|ref|ZP_01756208.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseobacter sp. SK209-2-6]
 gi|126718322|gb|EBA15037.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Roseobacter sp. SK209-2-6]
          Length = 463

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   HL+ 
Sbjct: 3  SYDVIIIGAGPGGYVSAIRCAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHATHLLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAGMGLKGK 75


>gi|89098906|ref|ZP_01171786.1| succinate dehydrogenase [Bacillus sp. NRRL B-14911]
 gi|89086310|gb|EAR65431.1| succinate dehydrogenase [Bacillus sp. NRRL B-14911]
          Length = 586

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           VIV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   VIVVGGGLAGLMATIKVAESGTPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +L+       R P    D       + +R A
Sbjct: 66  FDDTVYGGDFLANQPPVKAMTEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
                  Q+ L  +  +V      ++ ++ +V +        +VV   G   RGVI    
Sbjct: 126 FAGATTGQQLLYALDEQV-----RRHEVAGLVTKYEGWEFLGSVVDDEG-ICRGVIAQNL 179

Query: 167 LKIP 170
             + 
Sbjct: 180 TSME 183


>gi|310778261|ref|YP_003966594.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Ilyobacter polytropus DSM 2926]
 gi|309747584|gb|ADO82246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Ilyobacter polytropus DSM 2926]
          Length = 308

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVR 60
          + + YD+I+IGGG AG  AA  A +   +  +I  +   ++ S        G   G   R
Sbjct: 1  MEKIYDMIIIGGGPAGLTAAIYAGRAQLNVLVIEKRELGSLISAHKIDNYPGFPDGITGR 60

Query: 61 EI 62
          E+
Sbjct: 61 EL 62


>gi|260434105|ref|ZP_05788076.1| sarcosine oxidase subunit alpha [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417933|gb|EEX11192.1| sarcosine oxidase subunit alpha [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 977

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 66/211 (31%), Gaps = 42/211 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIG G AG  AA  A + GA   L          M           G L+ E   +D
Sbjct: 167 DLLVIGAGPAGLMAALTAGRAGADVILA----DESNQMG----------GRLLAETLEVD 212

Query: 67  GLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           G  G V AD    + R ++  +           D+  +  A++R +              
Sbjct: 213 GKPGHVWADEVLAELRAMDNVRLMTRTTVAGAYDQGTFA-ALERVLHHT----------- 260

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
                 +  +   ++    I     VL  G   R V         A R  D P      +
Sbjct: 261 -----GDRPAGAPLETYWRIAARRSVLAAGALERPV---------AFRNNDRPGIMTAGA 306

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEK 216
              +    G   TG    + G T    +T +
Sbjct: 307 VRAYLNRWGVA-TGRSVTIFGNTDDIHRTAR 336


>gi|242399130|ref|YP_002994554.1| Thioredoxin reductase [Thermococcus sibiricus MM 739]
 gi|242265523|gb|ACS90205.1| Thioredoxin reductase [Thermococcus sibiricus MM 739]
          Length = 334

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +++D+++IG G AG  AA  +A+ G  T +I+   
Sbjct: 18 TKTWDILIIGAGPAGFTAAIYSARYGFDTLIISKDI 53


>gi|225562990|gb|EEH11269.1| translation initiation factor eIF3a [Ajellomyces capsulatus G186AR]
 gi|240279808|gb|EER43313.1| translation initiation factor eIF3a [Ajellomyces capsulatus H143]
          Length = 1054

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 16/135 (11%)

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +   +  +     +  ++   L  K L       K    +    + L         L  +
Sbjct: 648 EHLERERKRMKDEKDRIRQEELK-KQLEELKTGVKGIDVSEINLDELDSNSLRHIKLAQL 706

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             +  + +     R++I +    +  R        + EE + +P   DY +   L  E+ 
Sbjct: 707 EKEKNELND----RVRITAKRIDHLER------AYRREELKHLPA--DYEAQRKLDLEVY 754

Query: 582 EKLSILKPFNLLQAS 596
           EK +      L  A 
Sbjct: 755 EK-NKA--DTLAAAK 766


>gi|221212056|ref|ZP_03585034.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD1]
 gi|221168141|gb|EEE00610.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD1]
          Length = 386

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D IVIGGG  G  +A   A+ GA   ++
Sbjct: 13 DAIVIGGGLHGTSSAWQLARRGARVIVL 40


>gi|218778157|ref|YP_002429475.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759541|gb|ACL02007.1| Predicted NADH:flavin oxidoreductase/NADH oxidase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 640

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +V V+G G AG  AA  AAKLG   +L    
Sbjct: 381 NVWVVGAGPAGLTAAYEAAKLGHKVSLFEQS 411


>gi|163794074|ref|ZP_02188047.1| oxidoreductase [alpha proteobacterium BAL199]
 gi|159180688|gb|EDP65207.1| oxidoreductase [alpha proteobacterium BAL199]
          Length = 435

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG   A   A+ G   AL 
Sbjct: 13 DVVVIGGGIAGVCTAYYLARSGVKVALC 40


>gi|106709971|gb|ABF82429.1| halogenase [Streptomyces chartreusis]
          Length = 497

 Score = 41.5 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 57/175 (32%), Gaps = 20/175 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +DV V+GGG AG   AA+ AK G    ++              ++       + R 
Sbjct: 4   VTEEFDVAVVGGGPAGSTLAALVAKQGHRVVVLE--KENFPRYQIGESLLPSTIHGVCRL 61

Query: 62  IDALDGLM---------GRVADAAGIQFRVLNVKKGPAVRGP---RTQADRELYRLAMQR 109
             A D L          G     A  +         P + GP     Q +R  +   + +
Sbjct: 62  SGAADDLAKAGFPLKRGGTFRWGARPEPWTFAFSVSPRMAGPTSVAYQVERSKFDDILLK 121

Query: 110 EILSQENLDVIQG-EVAGFNTEKNIISSIV--MQDN--SMIRCSTVVLTTGTFLR 159
               Q   DV +G  V G   E   +  +     D     IR   VV  +G   R
Sbjct: 122 NARKQ-GADVREGCSVRGVIEEGERVHGLTYADADGNEREIRARYVVDASGNKSR 175


>gi|327440749|dbj|BAK17114.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase component [Solibacillus silvestris
          StLB046]
          Length = 445

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
           ++D+ VIG G  G  AA  AAK G   AL+      +G    ++ C P+   L    LV
Sbjct: 2  ENFDLAVIGAGPGGYVAAIHAAKSGLKVALVE--KDKVGGACYNVGCIPSKIMLEHSKLV 59

Query: 60 REID 63
          +EI 
Sbjct: 60 QEIR 63


>gi|325092939|gb|EGC46249.1| translation initiation factor eIF3a [Ajellomyces capsulatus H88]
          Length = 1054

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 16/135 (11%)

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSI 521
           +   +  +     +  ++   L  K L       K    +    + L         L  +
Sbjct: 648 EHLERERKRMKDEKDRIRQEELK-KQLEELKTGVKGIDVSEINLDELDSNSLRHIKLAQL 706

Query: 522 CPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELK 581
             +  + +     R++I +    +  R        + EE + +P   DY +   L  E+ 
Sbjct: 707 EKEKNELND----RVRITAKRIDHLER------AYRREELKHLPA--DYEAQRKLDLEVY 754

Query: 582 EKLSILKPFNLLQAS 596
           EK +      L  A 
Sbjct: 755 EK-NKA--DTLAAAK 766


>gi|315659486|ref|ZP_07912348.1| dihydrolipoyl dehydrogenase [Staphylococcus lugdunensis M23590]
 gi|315495469|gb|EFU83802.1| dihydrolipoyl dehydrogenase [Staphylococcus lugdunensis M23590]
          Length = 451

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+   +D+IV+G G  G  A+  AA+LG   A+I
Sbjct: 1  MMVEQFDLIVVGAGPGGYVASIRAAQLGMKVAVI 34


>gi|309364024|emb|CAP25651.2| hypothetical protein CBG_05074 [Caenorhabditis briggsae AF16]
          Length = 399

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + + YDV+V+G G  G   A    +LG  T L             N +    GK  + R
Sbjct: 1  MPKHYDVVVVGAGIFGSCTAYHCQRLGLRTLL----LEQFNIGHANGS--SHGKSRITR 53


>gi|289549884|ref|YP_003470788.1| Dihydrolipoamide dehydrogenase of acetoin dehydrogenase
          [Staphylococcus lugdunensis HKU09-01]
 gi|289179416|gb|ADC86661.1| Dihydrolipoamide dehydrogenase of acetoin dehydrogenase
          [Staphylococcus lugdunensis HKU09-01]
          Length = 451

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+   +D+IV+G G  G  A+  AA+LG   A+I
Sbjct: 1  MMVEQFDLIVVGAGPGGYVASIRAAQLGMKVAVI 34


>gi|225405413|ref|ZP_03760602.1| hypothetical protein CLOSTASPAR_04633 [Clostridium asparagiforme
           DSM 15981]
 gi|225043060|gb|EEG53306.1| hypothetical protein CLOSTASPAR_04633 [Clostridium asparagiforme
           DSM 15981]
          Length = 663

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           V+++GGG AGCE A V A+ G    L          +  N   GG+ +
Sbjct: 405 VLIVGGGVAGCECARVTAERGHKVILC----EKSARLGGNLIPGGVPE 448


>gi|221198930|ref|ZP_03571975.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2M]
 gi|221181381|gb|EEE13783.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2M]
          Length = 389

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D IVIGGG  G  +A   A+ GA   ++
Sbjct: 16 DAIVIGGGLHGTSSAWQLARRGARVIVL 43


>gi|163739235|ref|ZP_02146647.1| hypothetical protein RGBS107_01385 [Phaeobacter gallaeciensis
          BS107]
 gi|161387635|gb|EDQ11992.1| hypothetical protein RGBS107_01385 [Phaeobacter gallaeciensis
          BS107]
          Length = 433

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          D++V+GGG+ GC AA  AA+LGA   L+  +T   G    N  +   G
Sbjct: 30 DLVVVGGGYTGCSAALRAAELGADVRLLEAETFGAGGSGRNVGLVNAG 77


>gi|163742427|ref|ZP_02149814.1| hypothetical protein RG210_01315 [Phaeobacter gallaeciensis 2.10]
 gi|161384377|gb|EDQ08759.1| hypothetical protein RG210_01315 [Phaeobacter gallaeciensis 2.10]
          Length = 436

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          D++V+GGG+ GC AA  AA+LGA   L+  +T   G    N  +   G
Sbjct: 33 DLVVVGGGYTGCSAALRAAELGADVRLLEAETFGAGGSGRNVGLVNAG 80


>gi|114707325|ref|ZP_01440222.1| dihydrolipoamide dehydrogenase [Fulvimarina pelagi HTCC2506]
 gi|114537206|gb|EAU40333.1| dihydrolipoamide dehydrogenase [Fulvimarina pelagi HTCC2506]
          Length = 475

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 21/167 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M++  YD++VIG G  G   A  AA+LG   A +  K  T G    N     +G      
Sbjct: 4   MMSEPYDLVVIGSGPGGYVCAIKAAQLGMKVACVE-KRETYGGTCLN-----VGCIPSKA 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            + A +         AG  +  L +K  P +  P     ++    +    I         
Sbjct: 58  LLHASERFH-----EAGHHYASLGIKVSPELDLPAMMTHKDKTVKSNVDGIAY----LFK 108

Query: 121 QGEVAGFN----TEKNIISSIVMQDNS--MIRCSTVVLTTGTFLRGV 161
           + +V GF      E      +  +D S   +    +V+ TG+ + G+
Sbjct: 109 KNKVDGFIGTGSIEAKGKVKVEKEDGSSETLDAKNIVIATGSEVAGI 155


>gi|94968298|ref|YP_590346.1| FAD dependent oxidoreductase [Candidatus Koribacter versatilis
          Ellin345]
 gi|94550348|gb|ABF40272.1| FAD dependent oxidoreductase [Candidatus Koribacter versatilis
          Ellin345]
          Length = 555

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  +D IVIGGGH G   AA  A+ G  T ++
Sbjct: 30 NNKFDAIVIGGGHNGLVNAAYLARAGKKTVVL 61


>gi|21233314|ref|NP_639231.1| mercuric reductase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770276|ref|YP_245038.1| mercuric reductase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21115145|gb|AAM43113.1| pyridine nucleotide-disulfide oxidoreductase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66575608|gb|AAY51018.1| pyridine nucleotide-disulfide oxidoreductase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 460

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 21/141 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
           M    YD IV+G G AG   A   A+ G   A+I       T  +  C P    +    +
Sbjct: 1   MTATRYDAIVVGAGQAGPSLAVRLAERGQRVAVIERHLVGGTCVNTGCMPTKTLVASARV 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP-----RTQADRELYRLAMQREILS 113
                       R+A              GP          R  A  +  R  +++ +  
Sbjct: 61  AHLARRAGDYGVRIA--------------GPVEVDLPQVMARAHAISDAARTGVEQWLAQ 106

Query: 114 QENLDVIQGEVAGFNTEKNII 134
              + +I+G       ++  +
Sbjct: 107 TPGVQLIRGHARFVAPDRLRV 127


>gi|89893862|ref|YP_517349.1| putative fumarate reductase flavoprotein subunit
           [Desulfitobacterium hafniense Y51]
 gi|89333310|dbj|BAE82905.1| putative fumarate reductase flavoprotein subunit
           [Desulfitobacterium hafniense Y51]
          Length = 519

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G +G  A   AA+LGA   L+            N  +GG G G     + A+ 
Sbjct: 60  DVVVVGAGSSGVCATVQAAQLGAKVVLLE----------KNAFLGGNGAG--TEGMFAIG 107

Query: 67  GLM 69
             M
Sbjct: 108 SRM 110


>gi|83312474|ref|YP_422738.1| putative glutamate synthase (NADPH) small subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82947315|dbj|BAE52179.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 651

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG  AA    + G +  L   K    G +       G+      RE+  LD 
Sbjct: 151 VAVVGGGPAGLSAAYQLRRQGHAVTLFEEKAELGGYVRY-----GIPGYRTPREV--LDS 203

Query: 68  LMGRVADA 75
            +GR+ D 
Sbjct: 204 EIGRIIDM 211


>gi|268579817|ref|XP_002644891.1| Hypothetical protein CBG05074 [Caenorhabditis briggsae]
          Length = 384

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + + YDV+V+G G  G   A    +LG  T L             N +    GK  + R
Sbjct: 1  MPKHYDVVVVGAGIFGSCTAYHCQRLGLRTLL----LEQFNIGHANGS--SHGKSRITR 53


>gi|33863825|ref|NP_895385.1| NAD binding site [Prochlorococcus marinus str. MIT 9313]
 gi|33635408|emb|CAE21733.1| NAD binding site [Prochlorococcus marinus str. MIT 9313]
          Length = 362

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YDV+V+G G  G  AAA+ AK G    ++   
Sbjct: 13 YDVLVVGAGIGGLTAAALLAKRGYRVLVVEQH 44


>gi|219668238|ref|YP_002458673.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfitobacterium hafniense DCB-2]
 gi|219538498|gb|ACL20237.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfitobacterium hafniense DCB-2]
          Length = 519

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G +G  A   AA+LGA   L+            N  +GG G G     + A+ 
Sbjct: 60  DVVVVGAGSSGVCATVQAAQLGAKVVLLE----------KNAFLGGNGAG--TEGMFAIG 107

Query: 67  GLM 69
             M
Sbjct: 108 SRM 110


>gi|329937727|ref|ZP_08287246.1| flavoprotein disulfide reductase [Streptomyces griseoaurantiacus
          M045]
 gi|329303126|gb|EGG47014.1| flavoprotein disulfide reductase [Streptomyces griseoaurantiacus
          M045]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          M +  YD+IVIG G  G +AA  AAKLG  T  +  +   +G +S
Sbjct: 1  MFD--YDMIVIGSGPGGQKAAIAAAKLG-RTVAVIDRPDRLGGVS 42


>gi|328544707|ref|YP_004304816.1| FAD dependent oxidoreductase TIGR03364 [polymorphum gilvum
          SL003B-26A1]
 gi|326414449|gb|ADZ71512.1| FAD dependent oxidoreductase TIGR03364 [Polymorphum gilvum
          SL003B-26A1]
          Length = 372

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          SYDV V+G G  G   A  AA+ G    +I   T   G+   N   
Sbjct: 2  SYDVAVVGAGIVGLAHALAAARKGRKVVVIDRDTQANGASIRNFGF 47


>gi|257052090|ref|YP_003129923.1| FAD dependent oxidoreductase [Halorhabdus utahensis DSM 12940]
 gi|256690853|gb|ACV11190.1| FAD dependent oxidoreductase [Halorhabdus utahensis DSM 12940]
          Length = 409

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +   YDV++ G G AGC+ A   A+ G    ++  +++       N + GG 
Sbjct: 1  MVEGYDVVIAGAGPAGCQCARDVARRGYDVVVLEAESAAEFPRGSNKSTGGT 52


>gi|168181345|ref|ZP_02616009.1| exonuclease SbcCD, C subunit [Clostridium botulinum Bf]
 gi|237793799|ref|YP_002861351.1| exonuclease SbcCD subunit C [Clostridium botulinum Ba4 str. 657]
 gi|182675422|gb|EDT87383.1| exonuclease SbcCD, C subunit [Clostridium botulinum Bf]
 gi|229261518|gb|ACQ52551.1| exonuclease SbcCD, C subunit [Clostridium botulinum Ba4 str. 657]
          Length = 1176

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 9/158 (5%)

Query: 414 DLTSKGVLEPYRMFTS--RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEY 471
           DL  K + E Y+  +     E  + ++ +N   +   I  K+  I   R     KY ++ 
Sbjct: 320 DLNLKNIEEEYKKVSKDKEEEIPLLMQKENNLLQAIEIKKKVEVIKRERADLVQKYKEKE 379

Query: 472 NFLRS--LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFS 529
           + +R+  ++K  +  + N  S  I  K++       +         Q L+ I  + ++ +
Sbjct: 380 SLIRNKNIVKKHIEENINKISGEIKLKEEEINSLKIDGDRREKI--QKLYEIDKEYKRLN 437

Query: 530 SLVI---ERLQIESSYAAYTGRQMIEAKEIKFEEKRLI 564
             V    ER+ I+         +  +  E++ +  + +
Sbjct: 438 LEVCNITERINIKIKSLKEYELKYKDTLEMQRDINKKL 475


>gi|153813637|ref|ZP_01966305.1| hypothetical protein RUMOBE_04060 [Ruminococcus obeum ATCC 29174]
 gi|149830253|gb|EDM85346.1| hypothetical protein RUMOBE_04060 [Ruminococcus obeum ATCC 29174]
          Length = 425

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++YD+++IGGG AG  AA  A K G  + LI
Sbjct: 2  KTYDIVIIGGGPAGLSAAVAARKNGTESILI 32


>gi|189424011|ref|YP_001951188.1| succinate dehydrogenase [Geobacter lovleyi SZ]
 gi|189420270|gb|ACD94668.1| Succinate dehydrogenase [Geobacter lovleyi SZ]
          Length = 511

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 48/208 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--CNPAIGGLGKGH------- 57
           D+ V+GGG +G  AA  A +LGA   ++  K + +G     C        K         
Sbjct: 30  DIAVVGGGLSGLSAATQATQLGAKVVVLE-KQAKVGGTGLFCEGVFAAESKLQKRIGINV 88

Query: 58  -------LVREIDALD---GLMGRVADAAGIQFRVLNV------------KKGPAVR--- 92
                  L+ E         L     D +      L+               GP      
Sbjct: 89  TKDFAYKLIMEYSHWKANSALAKHFVDRSAETVDWLDSMGIKIEYIGVGGHGGPLTWHVI 148

Query: 93  --GPRTQADRELYRLAMQREI--LSQENLD-----VIQGEVAGFNTEKNIISSI--VMQD 141
             GP   + +       +R I   S+   D     ++Q        +   +  +    + 
Sbjct: 149 APGPDYLSGKNKKDYHCERIINVFSKYVTDKGGQILLQTPGTDLIMDNGKVVGVWAKDKS 208

Query: 142 NSMIR--CSTVVLTTGTFLRGVIHIGKL 167
              IR     VV+ TG F      + K 
Sbjct: 209 GEKIRINAKAVVIATGGFSSNKEMMKKY 236


>gi|41409796|ref|NP_962632.1| succinate dehydrogenase flavoprotein subunit [Mycobacterium avium
          subsp. paratuberculosis K-10]
 gi|41398628|gb|AAS06248.1| hypothetical protein MAP_3698c [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 647

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +YDV+VIG G AG  A   A + G   A++       G      A GG    
Sbjct: 7  HAYDVVVIGAGGAGLRAVIEARERGLRVAVVCKSL--FGKAHTVMAEGGCAAS 57


>gi|83951400|ref|ZP_00960132.1| probable methylamine [Roseovarius nubinhibens ISM]
 gi|83836406|gb|EAP75703.1| probable methylamine [Roseovarius nubinhibens ISM]
          Length = 689

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+G G AG EAA    + G   A+
Sbjct: 390 VLVVGSGPAGLEAAWALCRRGYDVAI 415


>gi|150015264|ref|YP_001307518.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium beijerinckii NCIMB 8052]
 gi|149901729|gb|ABR32562.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Clostridium beijerinckii NCIMB 8052]
          Length = 318

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           Y++I+IG G AG  AA  AA+ G +  LI  K S +G
Sbjct: 3  DYELIIIGAGIAGMTAALGAAREGITKILIIEKESNVG 40


>gi|330999565|ref|ZP_08323278.1| FAD binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329574663|gb|EGG56226.1| FAD binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 505

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 37/191 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-SMSCNPAIGGLGKGHLVREIDAL 65
           D++V+G G AG  AA   A+LG    L+       G S           + + +R     
Sbjct: 31  DLVVVGAGSAGLSAAVQGAELGKKVVLLEKNPYVGGNSQHAEGLFAVDSEWNRLRSDPLT 90

Query: 66  DGLMGRVADAAGIQFRVLNVKKGP-----------AVRGPRTQADRELY-RLAMQREILS 113
                                K             A  G   +  RE   +      I +
Sbjct: 91  RQQAYEAFIKKQNHLVDPYKNKDFVEGSGENISWLASHGIEFEVRRETPDKDNTWHIIKN 150

Query: 114 QENLD----VIQGE----------------VAGFNTEKNIISSIVMQD----NSMIRCST 149
            +  +    +I+G                      T+   +  +V +D       I    
Sbjct: 151 YKGTNHGAGLIKGMKDAADKLGVTTMVSTPATDLITKDGKVVGVVAKDAKGNTYTINSKA 210

Query: 150 VVLTTGTFLRG 160
           V+L +G+F   
Sbjct: 211 VILASGSFGDD 221


>gi|313636386|gb|EFS02164.1| thioredoxin-disulfide reductase [Listeria seeligeri FSL S4-171]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|300718881|ref|YP_003743684.1| oxidoreductase [Erwinia billingiae Eb661]
 gi|299064717|emb|CAX61837.1| putative oxidoreductase [Erwinia billingiae Eb661]
          Length = 393

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DVI+IG G AG   AA A + G    L                + G G+ +
Sbjct: 2  EKFDVIIIGAGAAGLFCAAQAGQRGKRVLL----LDNGKKAGRKILMSGGGRCN 51


>gi|255521857|ref|ZP_05389094.1| thioredoxin reductase [Listeria monocytogenes FSL J1-175]
          Length = 228

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|254294935|ref|YP_003060958.1| monooxygenase FAD-binding [Hirschia baltica ATCC 49814]
 gi|254043466|gb|ACT60261.1| monooxygenase FAD-binding [Hirschia baltica ATCC 49814]
          Length = 492

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDVIVIG G  G   A   A+ G  T ++
Sbjct: 5  NEYDVIVIGAGPTGMTLALFLAQNGVKTLVL 35


>gi|167630393|ref|YP_001680892.1| thioredoxin reductase, putative [Heliobacterium modesticaldum
          Ice1]
 gi|167593133|gb|ABZ84881.1| thioredoxin reductase, putative [Heliobacterium modesticaldum
          Ice1]
          Length = 306

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +D+IVIG G AG   A   A+   S  +          +     + G  +G   +E+  L
Sbjct: 3  FDIIVIGSGAAGLSTAIQLARYNHSVLVFDGGEGRTSWVPRYHNLLGYPQGISGKELLRL 62

Query: 66 DGLMGRV 72
               ++
Sbjct: 63 GREQAQL 69


>gi|158425369|ref|YP_001526661.1| succinate dehydrogenase flavoprotein subunit [Azorhizobium
          caulinodans ORS 571]
 gi|158332258|dbj|BAF89743.1| succinate dehydrogenase or fumarate reductase [Azorhizobium
          caulinodans ORS 571]
          Length = 610

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + +YDV+V+G G AG  A    ++ G  TA +T
Sbjct: 22 DHTYDVLVVGAGGAGLRAVVGCSEAGLRTACVT 54


>gi|254828053|ref|ZP_05232740.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL N3-165]
 gi|258600437|gb|EEW13762.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL N3-165]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|154344555|ref|XP_001568219.1| NADH-dependent fumarate reductase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065556|emb|CAM43326.1| putative NADH-dependent fumarate reductase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1147

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           VI++GGG AGC AA  A   GA   L+  K + IG        G   K      I+A  
Sbjct: 390 VIIVGGGLAGCSAAIEAVNCGAQVILLE-KEAKIG--------GNSAKATS--GINAWG 437


>gi|254250588|ref|ZP_04943907.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124879722|gb|EAY67078.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 441

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 23/190 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG--------GLGKGHL 58
           DV ++G G AG  AA  AA LG    L+      +G  + N  IG        G  +  +
Sbjct: 30  DVCIVGAGIAGTSAALEAAALGRKVVLVD-SLPALGGQAVNSIIGTFCGLFSNGPRRFQV 88

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
              I   DG++  + +   + ++     +GP         D       ++++IL    + 
Sbjct: 89  THGI--ADGILRDLGEKGALHYK-----EGP--LTTVVLYDEVALARWIEQKILD-AGIT 138

Query: 119 VIQGEVA-GFNTEKNIIS--SIVMQDNSM-IRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           V+ G V      E   +    +  +   + I     V  +G      +     + P   +
Sbjct: 139 VVLGAVLRDVVREGRRVRELDVATRYGDVRIAADGFVDASGDAALTWLAGFDCQEPETPI 198

Query: 175 GDSPSNSLFN 184
             +    L N
Sbjct: 199 RGTQMIVLEN 208


>gi|25147318|ref|NP_509092.2| hypothetical protein C15B12.1 [Caenorhabditis elegans]
 gi|20139882|sp|Q18006|SOX_CAEEL RecName: Full=Putative sarcosine oxidase
 gi|16950385|gb|AAL32208.1|U23529_1 Hypothetical protein C15B12.1 [Caenorhabditis elegans]
          Length = 384

 Score = 41.5 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDV+V+G G  G   A    K+G  T L+         +         GK  + R 
Sbjct: 1  MSTDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLEQF-----ELGHKNG-SSHGKSRITRY 54

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
                 +  V DA    F  L   +G  + 
Sbjct: 55 AHTEVEYVDLVGDAYNQIFE-LERIRGEKLW 84


>gi|332992833|gb|AEF02888.1| alkyl hydroperoxide reductase subunit F [Alteromonas sp. SN2]
          Length = 529

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT-----HKTSTIG---SMSCNPAIGGLGKGHL 58
           DV VIGGG AG  +A  +A+ G    ++          T+G    +S +   G    G+L
Sbjct: 217 DVTVIGGGPAGVASAIYSARKGLKVTVVADRFGGQVKDTMGIENLISVSKTTGPELVGNL 276

Query: 59  VREIDALD 66
           +  ++  D
Sbjct: 277 MEHMNDYD 284


>gi|326388301|ref|ZP_08209904.1| sarcosine oxidase, subunit alpha [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207467|gb|EGD58281.1| sarcosine oxidase, subunit alpha [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 954

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+V+GGG AG EAA  AA  G    LI
Sbjct: 171 EVLVVGGGIAGMEAALEAAAKGGRVFLI 198


>gi|323706536|ref|ZP_08118093.1| L-aspartate oxidase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534114|gb|EGB23908.1| L-aspartate oxidase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 534

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK---------GH 57
           D +++G G AG  AA   AK      L+T     +   S + A GG+            H
Sbjct: 18  DYVIVGSGIAGLNAAY-LAKNYGEVFLLT--KDRLSHSSSSLAQGGIACVISQVDSFESH 74

Query: 58  LVREIDALDGLMGRVA------DAAGIQFRVLNVK-------------KGPAVRGPRTQA 98
           +   I A  GL  R A      +A     R++N+              +  A    R   
Sbjct: 75  IKDTIYAGAGLCDREAVEVLVKEAPSNIKRLINLGVKFDKRDGELELGREGAHSSNRIIH 134

Query: 99  DRELYRLAMQREILSQ-ENLDVIQGE-VAGFNTEKNIISSIVMQD-----NSMIRCSTVV 151
             +     +   ++S  + + + +G  V     E NI+  ++ ++       ++    V+
Sbjct: 135 AGDYTGREIINGLISVLDGVKIFEGTLVLDLLVEDNIVKGVLAKNLISDQFFIVWAKVVI 194

Query: 152 LTTGTFLRGVIHIGKLKIPAG 172
           L TG      ++        G
Sbjct: 195 LATGGAGNLFLNTTNPDTSTG 215


>gi|323443190|gb|EGB00808.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus O46]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|315283602|ref|ZP_07871749.1| thioredoxin-disulfide reductase [Listeria marthii FSL S4-120]
 gi|313612758|gb|EFR86753.1| thioredoxin-disulfide reductase [Listeria marthii FSL S4-120]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|313891410|ref|ZP_07825026.1| putative thioredoxin-disulfide reductase [Dialister
          microaerophilus UPII 345-E]
 gi|313120185|gb|EFR43361.1| putative thioredoxin-disulfide reductase [Dialister
          microaerophilus UPII 345-E]
          Length = 539

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + + YD I++GGG AG  AA   A+      ++     TIG
Sbjct: 1  MEKLYDAIIVGGGPAGLSAAIYMARAQFKVLVVE--KETIG 39


>gi|308187389|ref|YP_003931520.1| Gamma-glutamylputrescine oxidoreductase [Pantoea vagans C9-1]
 gi|308057899|gb|ADO10071.1| Gamma-glutamylputrescine oxidoreductase [Pantoea vagans C9-1]
          Length = 454

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  L+
Sbjct: 56 DVVVIGGGFTGVSAALNLARSGISVVLL 83


>gi|302333195|gb|ADL23388.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus JKD6159]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|298694801|gb|ADI98023.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          ED133]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|299139809|ref|ZP_07032981.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidobacterium sp. MP5ACTX8]
 gi|298598163|gb|EFI54329.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidobacterium sp. MP5ACTX8]
          Length = 464

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YD+IVIG G AG  AA   AKLG   AL+  
Sbjct: 1  MGTVYDLIVIGSGPAGQRAAIYGAKLGKRIALVEM 35


>gi|296158783|ref|ZP_06841612.1| dihydrolipoamide dehydrogenase [Burkholderia sp. Ch1-1]
 gi|295890988|gb|EFG70777.1| dihydrolipoamide dehydrogenase [Burkholderia sp. Ch1-1]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|269203148|ref|YP_003282417.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus ED98]
 gi|262075438|gb|ACY11411.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus ED98]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|262051185|ref|ZP_06023409.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus 930918-3]
 gi|259160822|gb|EEW45842.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus 930918-3]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|258423172|ref|ZP_05686065.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9635]
 gi|257846622|gb|EEV70643.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9635]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|290892641|ref|ZP_06555633.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL J2-071]
 gi|290557701|gb|EFD91223.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL J2-071]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|257425644|ref|ZP_05602068.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257428305|ref|ZP_05604703.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257430942|ref|ZP_05607322.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257433631|ref|ZP_05609989.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257436544|ref|ZP_05612588.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          M876]
 gi|282904101|ref|ZP_06311989.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905928|ref|ZP_06313783.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282908838|ref|ZP_06316656.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282911157|ref|ZP_06318959.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282914326|ref|ZP_06322112.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          M899]
 gi|282924620|ref|ZP_06332288.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C101]
 gi|283958283|ref|ZP_06375734.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|293503401|ref|ZP_06667248.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293510417|ref|ZP_06669123.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          M809]
 gi|293530957|ref|ZP_06671639.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          M1015]
 gi|297590937|ref|ZP_06949575.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          MN8]
 gi|257271338|gb|EEV03484.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257275146|gb|EEV06633.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257278372|gb|EEV09008.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257281724|gb|EEV11861.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257283895|gb|EEV14018.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          M876]
 gi|282313455|gb|EFB43850.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C101]
 gi|282321507|gb|EFB51832.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          M899]
 gi|282324852|gb|EFB55162.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282327102|gb|EFB57397.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282331220|gb|EFB60734.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282595719|gb|EFC00683.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C160]
 gi|283790432|gb|EFC29249.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|290920225|gb|EFD97291.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291095067|gb|EFE25332.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291466781|gb|EFF09301.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          M809]
 gi|297575823|gb|EFH94539.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          MN8]
 gi|312438013|gb|ADQ77084.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|315195420|gb|EFU25807.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus CGS00]
 gi|323440416|gb|EGA98128.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus O11]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|226366504|ref|YP_002784287.1| oxidoreductase [Rhodococcus opacus B4]
 gi|226244994|dbj|BAH55342.1| putative oxidoreductase [Rhodococcus opacus B4]
          Length = 552

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----------SMSCNPAIGGLG 54
          S+DV+++G G AG  AA  AA  GA   +   K   +G           +  NP +G  G
Sbjct: 6  SFDVVILGSGAAGLTAAFTAAVSGARVGVFE-KADKVGGTAAWSGGNVWVPNNPLMGAAG 64

Query: 55 KGHLVRE 61
                E
Sbjct: 65 VADSEEE 71


>gi|224057577|ref|XP_002299276.1| glutathione reductase [Populus trichocarpa]
 gi|222846534|gb|EEE84081.1| glutathione reductase [Populus trichocarpa]
          Length = 499

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGHLV 59
            +D+ VIG G  G  AA  +A  GA   +       I     +  IGG+G     +G + 
Sbjct: 24  DFDLFVIGAGSGGVRAARFSANYGAKVGICELPFHPIS----SEVIGGVGGTCVIRGCVP 79

Query: 60  REIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           ++I        G + DA    + V         +  + + D  +    + + +LS   + 
Sbjct: 80  KKILVYGANFGGEIEDARNYGWEVNEKVDFNWKKLLQKKTDEIIRLNGIYKRLLSNAGVK 139

Query: 119 VIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGT 156
           + +GE  G     N +    +           +++ TG+
Sbjct: 140 LYEGE--GKIVGPNEVEMTQLDGTKLRYSAKHILIATGS 176


>gi|221205190|ref|ZP_03578206.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2]
 gi|221174981|gb|EEE07412.1| FAD dependent oxidoreductase [Burkholderia multivorans CGD2]
          Length = 386

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D IVIGGG  G  +A   A+ GA   ++
Sbjct: 13 DAIVIGGGLHGTSSAWQLARRGARVIVL 40


>gi|254487509|ref|ZP_05100714.1| dihydrolipoyl dehydrogenase [Roseobacter sp. GAI101]
 gi|214044378|gb|EEB85016.1| dihydrolipoyl dehydrogenase [Roseobacter sp. GAI101]
          Length = 462

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGSGPGGYVSAIRCAQLGLKTACVEGR-DTLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EIDALDGLMGR 71
          E +   G MG 
Sbjct: 62 EAEHNFGEMGL 72


>gi|217963420|ref|YP_002349098.1| thioredoxin-disulfide reductase [Listeria monocytogenes HCC23]
 gi|217332690|gb|ACK38484.1| thioredoxin-disulfide reductase [Listeria monocytogenes HCC23]
 gi|307572005|emb|CAR85184.1| thioredoxin-disulfide reductase [Listeria monocytogenes L99]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|195124377|ref|XP_002006670.1| GI18459 [Drosophila mojavensis]
 gi|193911738|gb|EDW10605.1| GI18459 [Drosophila mojavensis]
          Length = 666

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 76/250 (30%), Gaps = 51/250 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGL-- 53
           +++  YD IV+G G +G  AA      G  TA+IT     ++ TI +    N A+G +  
Sbjct: 59  IVDHEYDAIVVGAGGSGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEE 118

Query: 54  ----------GKG------------------HLVREIDALDGLMGRVAD----AAGIQFR 81
                      KG                    V E++       R  D          +
Sbjct: 119 DDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQ 178

Query: 82  VLNVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
            L   KG         ADR  + L      + +    N   ++        E +    ++
Sbjct: 179 SLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLSYDCN-YFVEYFALDLIFENDECRGVL 237

Query: 139 ---MQDNS--MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS-PSNSLFNSFMKF--D 190
              ++D S    R    V+ TG + R            G          L +  ++F   
Sbjct: 238 ALNLEDGSLHRFRAKNTVIATGGYGRAFFSCTSAHTCTGDGTALVARQGLPSEDLEFVQF 297

Query: 191 FDTGRLKTGT 200
             TG    G 
Sbjct: 298 HPTGIYGAGC 307


>gi|119964416|ref|YP_948061.1| Rieske family iron-sulfur cluster-binding protein [Arthrobacter
          aurescens TC1]
 gi|119951275|gb|ABM10186.1| putative iron-sulfur cluster-binding protein, rieske family
          [Arthrobacter aurescens TC1]
          Length = 500

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +D IV+G G  G  AA + ++ G    + 
Sbjct: 20 EKHFDTIVVGAGLTGMVAALLLSRSGQRVVVF 51


>gi|91782999|ref|YP_558205.1| dihydrolipoamide dehydrogenase [Burkholderia xenovorans LB400]
 gi|91686953|gb|ABE30153.1| dihydrolipoamide dehydrogenase [Burkholderia xenovorans LB400]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|82751123|ref|YP_416864.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus RF122]
 gi|82656654|emb|CAI81080.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus RF122]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|49483768|ref|YP_040992.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|295428097|ref|ZP_06820729.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|49241897|emb|CAG40591.1| putative dihydrolipoamide dehydrogenase [Staphylococcus aureus
          subsp. aureus MRSA252]
 gi|295128455|gb|EFG58089.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          EMRSA16]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|21283200|ref|NP_646288.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49486355|ref|YP_043576.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57650475|ref|YP_186404.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus COL]
 gi|87162393|ref|YP_494163.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88195325|ref|YP_500129.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|151221636|ref|YP_001332458.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|161509747|ref|YP_001575406.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|221140061|ref|ZP_03564554.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|258451176|ref|ZP_05699211.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A5948]
 gi|262049104|ref|ZP_06021981.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus D30]
 gi|282924767|ref|ZP_06332434.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9765]
 gi|284024578|ref|ZP_06378976.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus 132]
 gi|294848549|ref|ZP_06789295.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9754]
 gi|297207762|ref|ZP_06924197.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300911843|ref|ZP_07129286.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304380893|ref|ZP_07363553.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|21204640|dbj|BAB95336.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49244798|emb|CAG43242.1| putative dihydrolipoamide dehydrogenase [Staphylococcus aureus
          subsp. aureus MSSA476]
 gi|57284661|gb|AAW36755.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus COL]
 gi|87128367|gb|ABD22881.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87202883|gb|ABD30693.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|150374436|dbj|BAF67696.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|160368556|gb|ABX29527.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|257861231|gb|EEV84044.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A5948]
 gi|259162773|gb|EEW47338.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus D30]
 gi|269941009|emb|CBI49393.1| putative dihydrolipoamide dehydrogenase [Staphylococcus aureus
          subsp. aureus TW20]
 gi|282592774|gb|EFB97780.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9765]
 gi|294824575|gb|EFG40998.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9754]
 gi|296887779|gb|EFH26677.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300886089|gb|EFK81291.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302751350|gb|ADL65527.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus str. JKD6008]
 gi|304340620|gb|EFM06554.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|315198787|gb|EFU29115.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|320140596|gb|EFW32450.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320144133|gb|EFW35902.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|329314196|gb|AEB88609.1| Dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          T0131]
 gi|329725280|gb|EGG61767.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          21189]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|66813528|ref|XP_640943.1| hypothetical protein DDB_G0280851 [Dictyostelium discoideum AX4]
 gi|60468968|gb|EAL66967.1| hypothetical protein DDB_G0280851 [Dictyostelium discoideum AX4]
          Length = 440

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IVIGGG  G  A    AK G    ++  
Sbjct: 49 YDCIVIGGGITGSSACYQMAKDGLKVLMLEQ 79


>gi|16804516|ref|NP_466001.1| thioredoxin reductase [Listeria monocytogenes EGD-e]
 gi|46908650|ref|YP_015039.1| thioredoxin-disulfide reductase [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47092764|ref|ZP_00230549.1| thioredoxin-disulfide reductase [Listeria monocytogenes str. 4b
          H7858]
 gi|47096070|ref|ZP_00233671.1| thioredoxin-disulfide reductase [Listeria monocytogenes str. 1/2a
          F6854]
 gi|224499835|ref|ZP_03668184.1| thioredoxin-disulfide reductase [Listeria monocytogenes Finland
          1988]
 gi|224503281|ref|ZP_03671588.1| thioredoxin-disulfide reductase [Listeria monocytogenes FSL
          R2-561]
 gi|226225026|ref|YP_002759133.1| thioredoxin reductase [Listeria monocytogenes Clip81459]
 gi|254825400|ref|ZP_05230401.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL J1-194]
 gi|254831099|ref|ZP_05235754.1| thioredoxin reductase [Listeria monocytogenes 10403S]
 gi|254853519|ref|ZP_05242867.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL R2-503]
 gi|254900384|ref|ZP_05260308.1| thioredoxin reductase [Listeria monocytogenes J0161]
 gi|254913377|ref|ZP_05263389.1| thioredoxin-disulfide reductase [Listeria monocytogenes J2818]
 gi|254932281|ref|ZP_05265640.1| thioredoxin reductase TrxB [Listeria monocytogenes HPB2262]
 gi|254937758|ref|ZP_05269455.1| thioredoxin reductase TrxB [Listeria monocytogenes F6900]
 gi|255026153|ref|ZP_05298139.1| thioredoxin reductase [Listeria monocytogenes FSL J2-003]
 gi|284802916|ref|YP_003414781.1| thioredoxin reductase [Listeria monocytogenes 08-5578]
 gi|284996057|ref|YP_003417825.1| thioredoxin reductase [Listeria monocytogenes 08-5923]
 gi|300765023|ref|ZP_07075011.1| thioredoxin-disulfide reductase [Listeria monocytogenes FSL
          N1-017]
 gi|3122975|sp|O32823|TRXB_LISMO RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|2246749|gb|AAB63804.1| thioredoxin reductase [Listeria monocytogenes]
 gi|16411966|emb|CAD00556.1| thioredoxin reductase [Listeria monocytogenes EGD-e]
 gi|46881922|gb|AAT05216.1| thioredoxin-disulfide reductase [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47015531|gb|EAL06463.1| thioredoxin-disulfide reductase [Listeria monocytogenes str. 1/2a
          F6854]
 gi|47018852|gb|EAL09600.1| thioredoxin-disulfide reductase [Listeria monocytogenes str. 4b
          H7858]
 gi|47559002|gb|AAT35570.1| thioredoxin reductase [Listeria monocytogenes]
 gi|225877488|emb|CAS06202.1| Putative thioredoxin reductase [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|258606892|gb|EEW19500.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL R2-503]
 gi|258610361|gb|EEW22969.1| thioredoxin reductase TrxB [Listeria monocytogenes F6900]
 gi|284058478|gb|ADB69419.1| thioredoxin reductase [Listeria monocytogenes 08-5578]
 gi|284061524|gb|ADB72463.1| thioredoxin reductase [Listeria monocytogenes 08-5923]
 gi|293583838|gb|EFF95870.1| thioredoxin reductase TrxB [Listeria monocytogenes HPB2262]
 gi|293591383|gb|EFF99717.1| thioredoxin-disulfide reductase [Listeria monocytogenes J2818]
 gi|293594643|gb|EFG02404.1| thioredoxin reductase TrxB [Listeria monocytogenes FSL J1-194]
 gi|300514323|gb|EFK41382.1| thioredoxin-disulfide reductase [Listeria monocytogenes FSL
          N1-017]
 gi|328465214|gb|EGF36477.1| thioredoxin reductase [Listeria monocytogenes 1816]
 gi|332312908|gb|EGJ26003.1| Thioredoxin reductase [Listeria monocytogenes str. Scott A]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|15924508|ref|NP_372042.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|15927099|ref|NP_374632.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus N315]
 gi|148268003|ref|YP_001246946.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus JH9]
 gi|150394070|ref|YP_001316745.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156979837|ref|YP_001442096.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253314888|ref|ZP_04838101.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253732172|ref|ZP_04866337.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733232|ref|ZP_04867397.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006305|ref|ZP_05144906.2| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257793595|ref|ZP_05642574.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9781]
 gi|258411105|ref|ZP_05681385.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A9763]
 gi|258420091|ref|ZP_05683046.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9719]
 gi|258437351|ref|ZP_05689335.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A9299]
 gi|258443557|ref|ZP_05691896.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A8115]
 gi|258446764|ref|ZP_05694918.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A6300]
 gi|258448678|ref|ZP_05696790.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A6224]
 gi|258453495|ref|ZP_05701473.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A5937]
 gi|282893020|ref|ZP_06301254.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8117]
 gi|282916789|ref|ZP_06324547.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          D139]
 gi|282928990|ref|ZP_06336577.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A10102]
 gi|283770595|ref|ZP_06343487.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus H19]
 gi|295406641|ref|ZP_06816446.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8819]
 gi|296275125|ref|ZP_06857632.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus MR1]
 gi|297245776|ref|ZP_06929641.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8796]
 gi|13701317|dbj|BAB42611.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus N315]
 gi|14247289|dbj|BAB57680.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|147741072|gb|ABQ49370.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus JH9]
 gi|149946522|gb|ABR52458.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156721972|dbj|BAF78389.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253724127|gb|EES92856.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728772|gb|EES97501.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257787567|gb|EEV25907.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9781]
 gi|257840255|gb|EEV64719.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A9763]
 gi|257843802|gb|EEV68196.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A9719]
 gi|257848556|gb|EEV72544.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A9299]
 gi|257850963|gb|EEV74906.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A8115]
 gi|257854339|gb|EEV77288.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A6300]
 gi|257857956|gb|EEV80845.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A6224]
 gi|257864226|gb|EEV86976.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus A5937]
 gi|282319276|gb|EFB49628.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          D139]
 gi|282589397|gb|EFB94488.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A10102]
 gi|282764338|gb|EFC04464.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8117]
 gi|283460742|gb|EFC07832.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus H19]
 gi|285817201|gb|ADC37688.1| Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid
          dehydrogenase [Staphylococcus aureus 04-02981]
 gi|294968388|gb|EFG44412.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8819]
 gi|297177427|gb|EFH36679.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus A8796]
 gi|312829908|emb|CBX34750.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315129796|gb|EFT85786.1| dihydrolipoamide dehydrogenase [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|329727603|gb|EGG64059.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          21172]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|332978130|gb|EGK14866.1| succinate dehydrogenase [Desmospora sp. 8437]
          Length = 598

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 63/192 (32%), Gaps = 44/192 (22%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A   AA+ GA   L +          C     N A+   G+G    E 
Sbjct: 14  IIVVGGGLAGLMATVQAAEAGADIDLFSIVPVRRSHSVCAQGGINGAVNTKGEGDSPWEH 73

Query: 62  --IDALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD------RELYRLA 106
                  G        +  + +AA     +++    P  R P    D       + +R A
Sbjct: 74  FDDTVYGGDFLANQPPVKAMCEAAPGIIYLMDRMGVPFNRTPEGLLDFRRFGGTKHHRTA 133

Query: 107 MQREILSQENLD-----VIQGEVAG-------------FNTEKNIISSIVMQDNS----- 143
                  Q+ L      V + EVAG                ++     IV QD       
Sbjct: 134 FAGATTGQQLLYALDEQVRRWEVAGNVTKYEHWEFTSLILDDEGRCRGIVAQDRRSMEIK 193

Query: 144 MIRCSTVVLTTG 155
             R   V+L TG
Sbjct: 194 AFRADAVILATG 205


>gi|259415153|ref|ZP_05739075.1| dihydrolipoyl dehydrogenase [Silicibacter sp. TrichCH4B]
 gi|259349063|gb|EEW60817.1| dihydrolipoyl dehydrogenase [Silicibacter sp. TrichCH4B]
          Length = 465

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGAGPGGYVSAIRCAQLGLKTAIVEGR-ETLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFASMGLKGK 75


>gi|260575750|ref|ZP_05843747.1| FAD dependent oxidoreductase [Rhodobacter sp. SW2]
 gi|259022148|gb|EEW25447.1| FAD dependent oxidoreductase [Rhodobacter sp. SW2]
          Length = 433

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV V+GGG+ G  AA   A+ G    L+       G+   N    G G
Sbjct: 38 DVCVVGGGYTGLSAALHLAQAGLRVVLLEAHRIGFGASGRNGGQVGSG 85


>gi|261823680|ref|YP_003261786.1| HI0933 family protein [Pectobacterium wasabiae WPP163]
 gi|261607693|gb|ACX90179.1| HI0933 family protein [Pectobacterium wasabiae WPP163]
          Length = 399

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
            +DV++IG G AG   AA A + G    L                + G G+ +
Sbjct: 2  EQFDVVIIGAGAAGMFCAAQAGQRGLRVLL----LDNGKKAGRKILMSGGGRCN 51


>gi|254481308|ref|ZP_05094553.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038471|gb|EEB79133.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 539

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + YD I+IG GH G   AA  A+ G  T ++            N  IGG     + RE+ 
Sbjct: 2  KKYDAIIIGAGHNGLTNAAYLARAGLDTLVLE----------KNDYIGGAA---VTREMH 48


>gi|251799116|ref|YP_003013847.1| HI0933 family protein [Paenibacillus sp. JDR-2]
 gi|247546742|gb|ACT03761.1| HI0933 family protein [Paenibacillus sp. JDR-2]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 24/168 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IGGG +G  AA  A+  GAST L          +     I G G+ ++    + +
Sbjct: 3   FDVIIIGGGPSGLMAAVAASGAGASTLL----IDKGDKLGRKLGISGGGRCNVTN-ANEM 57

Query: 66  DGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQ----------ADRELYRL-AMQ 108
           D L+      GR   +A  QF    +       G   +          +D+    + A+ 
Sbjct: 58  DELIRNIPGNGRFLFSALNQFGNREIIAFFEGMGIALKEEDRGRMFPVSDKAKTVVDALI 117

Query: 109 REILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           R++  Q  +++     V     E   ++ I +  N +I   +V++ TG
Sbjct: 118 RKVKEQ-GVEIRTNMPVKEVLYENGTVTGIRLASNEIIHTKSVIVATG 164


>gi|126732098|ref|ZP_01747900.1| hypothetical protein SSE37_14649 [Sagittula stellata E-37]
 gi|126707387|gb|EBA06451.1| hypothetical protein SSE37_14649 [Sagittula stellata E-37]
          Length = 436

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAI-GGLGKGHLVREIDA 64
           DV ++G G AG  AA V A+ G S A          G+ S N  I  G  +  L   I  
Sbjct: 34  DVAIVGAGFAGLSAALVLARAGRSVAAFDAMNPGE-GASSRNGGITSGNIRPSLDSLIKR 92

Query: 65  LDGLMGRVADAAGIQFR 81
                    +A G   R
Sbjct: 93  FGKETAYAIEAEGKVAR 109


>gi|46198927|ref|YP_004594.1| L-aspartate oxidase protein [Thermus thermophilus HB27]
 gi|46196551|gb|AAS80967.1| probable L-aspartate oxidase protein [Thermus thermophilus HB27]
          Length = 493

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 24/183 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS------CNPAIGGLG 54
           M     D++V+G G AG  AA  A + GA   L++      GS          P      
Sbjct: 1   MERHRTDLLVLGAGVAGVYAALAAEEKGARVLLVSKDPLPAGSTPWAQGGVAFPVGEEDQ 60

Query: 55  KGHLVREIDALDGLMGR-----VADAAGIQFRVLN----------VKKGPAVRGPRTQAD 99
           K HL   + A  GL+       + + A      L            ++G   R       
Sbjct: 61  KAHLRDTLVAGRGLVEEGVARSILEEAPRHLERLRAFGLPFHPEPTREGGHSRARVFHLG 120

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN---SMIRCSTVVLTTGT 156
            +   L +   +L + +  V+  +        N ++  ++        +R   V+L TG 
Sbjct: 121 GDRSGLLLLEGLLKRLSTPVVPAQALSLLVSGNRVAGALLWGPGGLWEVRAGAVLLATGG 180

Query: 157 FLR 159
           F R
Sbjct: 181 FGR 183


>gi|85704449|ref|ZP_01035551.1| probable N-methylproline demethylase (stahydrine utilization
           protein stcD) [Roseovarius sp. 217]
 gi|85670857|gb|EAQ25716.1| probable N-methylproline demethylase (stahydrine utilization
           protein stcD) [Roseovarius sp. 217]
          Length = 677

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           D +V+G G AG EAA V A+ G +  L 
Sbjct: 391 DAVVVGAGPAGLEAARVLAERGHNVRLF 418


>gi|224372846|ref|YP_002607218.1| succinate dehydrogenase flavoprotein subunit [Nautilia profundicola
           AmH]
 gi|223590044|gb|ACM93780.1| succinate dehydrogenase flavoprotein subunit [Nautilia profundicola
           AmH]
          Length = 516

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 42/196 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGSMSCNPAIGGLGKGHLV 59
            YD++VIG G AG  AA  A +LG++ A++T K+       +     N A+  +  G  +
Sbjct: 2   KYDILVIGSGIAGMMAAIEAKELGSNIAIVTKKSPMANNSFMAKGGINAALNNMEDGDSI 61

Query: 60  RE--IDALDGLMGRVADAAGIQF------------RVLNVKKGPAVRGPRTQ-------A 98
                D L G +G   + A   F            R   V       G   Q        
Sbjct: 62  EHHIQDTLKGGVGIADEEAVRIFCEQAPQVVRELHRRFKVPFNTLPNGKLAQRPFGGTKF 121

Query: 99  DRELYR---------LAMQREILSQENLDVIQGE-VAGFNTEKNIISSI-----VMQDNS 143
            R +Y           A+ + +     +D+I+             I+ +        +  
Sbjct: 122 KRTVYAADATGPAIMKALNKALKDL-GIDIIKNHLALNLLVNDGKIAGVTFLDEKTNELR 180

Query: 144 MIRCSTVVLTTGTFLR 159
           +I+   V++ TG +  
Sbjct: 181 VIQAKAVIVATGGYAG 196


>gi|170761298|ref|YP_001787131.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169408287|gb|ACA56698.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 407

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      LI      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILIERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              N+ ++  + V     E + I  +  +    I+    +L TG
Sbjct: 119 INRNVKILLNKRVTRIYKEDSNIKYVETEKGEKIKGDYFILCTG 162


>gi|116249286|ref|YP_765127.1| putative oxidoreductase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115253936|emb|CAK12331.1| putative oxidoreductase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 424

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV VIG G  G  AA   AK G    ++  +    G+   N      G  H      +
Sbjct: 25 HYDVAVIGAGFTGLAAARQLAKAGVKVVVLEAERVGWGASGRNGGHLNNGLAHSFLSAKS 84

Query: 65 LDGL 68
            G+
Sbjct: 85 ALGV 88


>gi|45433533|ref|NP_956114.2| eukaryotic translation initiation factor 3 subunit A [Danio rerio]
 gi|44890368|gb|AAH66670.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Danio rerio]
          Length = 1267

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
            +      R+ +      +     +  +       + +   ++  + +   +T     ++
Sbjct: 597 REAELQKVRKAEEERLRQEAKEREKERIMQ---EHEQIKKKTVRERLEQIKKTELGAKAF 653

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTGRQMIEA---KEIKFEEKRLI 564
            D  I++L  + PD     +  +E+L+ E          Q  +    +  K  E+  +
Sbjct: 654 KDIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPL 709


>gi|82237696|sp|Q6PCR7|EIF3A_DANRE RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 subunit 10; AltName:
           Full=eIF-3-theta
 gi|37589184|gb|AAH59196.1| Eukaryotic translation initiation factor 3, subunit 10 (theta)
           [Danio rerio]
          Length = 1267

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 451 MKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY 510
            +      R+ +      +     +  +       + +   ++  + +   +T     ++
Sbjct: 597 REAELQKVRKAEEERLRQEAKEREKERIMQ---EHEQIKKKTVRERLEQIKKTELGAKAF 653

Query: 511 PDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTGRQMIEA---KEIKFEEKRLI 564
            D  I++L  + PD     +  +E+L+ E          Q  +    +  K  E+  +
Sbjct: 654 KDIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPL 709


>gi|56461579|ref|YP_156860.1| flavoprotein [Idiomarina loihiensis L2TR]
 gi|56180589|gb|AAV83311.1| Predicted flavoprotein [Idiomarina loihiensis L2TR]
          Length = 393

 Score = 41.5 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          ++DVI+IG G AG   AA AA+ G S  +                I G G+ +
Sbjct: 3  NWDVIIIGAGAAGLHCAAHAAQRGKSVLV----LDHAKQAGKKILISGGGRCN 51


>gi|326383871|ref|ZP_08205555.1| FAD dependent oxidoreductase [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326197330|gb|EGD54520.1| FAD dependent oxidoreductase [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 474

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +   +D IV+G G  G  AAAV A+ G S  ++     TIG  +      G G
Sbjct: 1  MGNEWDAIVVGAGPNGLTAAAVLARAGRSVLVVE-SADTIGGGTRTDEAFGTG 52


>gi|315426108|dbj|BAJ47753.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Caldiarchaeum subterraneum]
 gi|315427830|dbj|BAJ49423.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Caldiarchaeum subterraneum]
          Length = 571

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGA-STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          DV VIG G AG  AA  AA++G     +     + +       A GG        E D+L
Sbjct: 8  DVAVIGSGLAGLRAAIEAARVGRDKVVVGVFTKTQVMRSHSVSAEGGTAAVLYPEEGDSL 67

Query: 66 DGLM---GRVADAAGIQFRV-LNVKKGP 89
             M    + +D    Q  V L VKK P
Sbjct: 68 QSHMYDTVKGSDFLADQDAVELFVKKAP 95


>gi|307326900|ref|ZP_07606091.1| FAD dependent oxidoreductase [Streptomyces violaceusniger Tu 4113]
 gi|306887436|gb|EFN18431.1| FAD dependent oxidoreductase [Streptomyces violaceusniger Tu 4113]
          Length = 456

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 31/196 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-------------MSCNPAIGGL 53
           D +V+GGG AG  AA     LG    +   +                   +    + G  
Sbjct: 5   DAVVVGGGLAGTLAAGAL--LGHVDTVTLVERDRYPEQPAFRKGVPQGRHLHVFLSGGRR 62

Query: 54  GKGHLV----REIDALDGLMGR-----VADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
               L      E++A            +  A     R  +  +       R   D  +  
Sbjct: 63  ALEELFPGLNGELEAAGAHRLEAPRDVITKAPNGWQRRFHEGRHATTSCTRALFDATVRA 122

Query: 105 LAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVM------QDNSMIRCSTVVLTTGTF 157
             +     S   ++V+QG E  G     + ++ + +      +    +    VV  +G  
Sbjct: 123 RVLADAEGSGTRVEVLQGTEAIGLLGGADRVTGVRVRARDAGRTGRELPADLVVDASGRG 182

Query: 158 LRGVIHIGKLKIPAGR 173
            R    + +L  PA R
Sbjct: 183 SRAPKWLAELGAPAPR 198


>gi|159901986|gb|ABX10716.1| succinate dehydrogenase flavoprotein subunit [uncultured
          planctomycete 13FN]
          Length = 637

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           R + VIV+G G AG  AAA  ++LG    + T  
Sbjct: 31 KRKFKVIVVGTGLAGASAAATLSELGFQVEVFTFH 65


>gi|104781972|ref|YP_608470.1| oxidoreductase [Pseudomonas entomophila L48]
 gi|95110959|emb|CAK15677.1| putative oxidoreductase [Pseudomonas entomophila L48]
          Length = 431

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          DV V+GGG  G  AA   A+ G S  L+  +    G+   N      G GH V
Sbjct: 32 DVCVVGGGLTGVNAALELAERGLSVILLEARRIGWGASGRNGGQLIRGIGHDV 84


>gi|126433878|ref|YP_001069569.1| flavoprotein disulfide reductase [Mycobacterium sp. JLS]
 gi|126233678|gb|ABN97078.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
           [Mycobacterium sp. JLS]
          Length = 470

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 24/163 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVREID 63
           +++IGGG AG EAA VAA  G  T +    +  +G       C P+   +    +  E+ 
Sbjct: 7   IVIIGGGPAGYEAALVAA--GPETHVTVIDSDGVGGACVLYDCVPSKTFIASTGVRTELR 64

Query: 64  ALDGLM--GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI- 120
              GL     + DA     ++ N  K  A    R+Q         +  ++L +E + VI 
Sbjct: 65  RATGLGFDISIEDAKISLPQIHNRVKTLA----RSQ------SADIGSQLL-REGVTVIG 113

Query: 121 -QGE-VAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLR 159
            +GE V            +   D    +++   V++ TG   R
Sbjct: 114 GRGELVDDVPGLAQHRVRVRTHDGKTGVLKADVVLIATGASPR 156


>gi|330829399|ref|YP_004392351.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Aeromonas
          veronii B565]
 gi|328804535|gb|AEB49734.1| Anaerobic glycerol-3-phosphate dehydrogenase subunit B [Aeromonas
          veronii B565]
          Length = 421

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +D IVIGGG AG  AA    + G  T L+ 
Sbjct: 2  KFDNIVIGGGMAGLSAALRLVEAGQKTLLMA 32


>gi|315929235|gb|EFV08453.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 305]
          Length = 667

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|253756174|ref|YP_003029314.1| thioredoxin reductase [Streptococcus suis BM407]
 gi|251818638|emb|CAZ56473.1| putative thioredoxin reductase [Streptococcus suis BM407]
          Length = 304

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +VIG G AG  AA  A +     AL+
Sbjct: 2  YDTVVIGAGPAGMTAALYAGRSNLKVALL 30


>gi|237786113|ref|YP_002906818.1| flavoprotein disulfide reductase [Corynebacterium kroppenstedtii
          DSM 44385]
 gi|237759025|gb|ACR18275.1| dihydrolipoamide dehydrogenase [Corynebacterium kroppenstedtii
          DSM 44385]
          Length = 468

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   ++
Sbjct: 5  IVIIGGGPAGYEAALAGAKYGAEVTVV 31


>gi|225390038|ref|ZP_03759762.1| hypothetical protein CLOSTASPAR_03788 [Clostridium asparagiforme
           DSM 15981]
 gi|225043915|gb|EEG54161.1| hypothetical protein CLOSTASPAR_03788 [Clostridium asparagiforme
           DSM 15981]
          Length = 395

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 41/170 (24%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  YD+I++GGG AG  AA  A +    T L+                          E
Sbjct: 4   MDSIYDLIIVGGGPAGLSAAIYAGRSERQTLLL--------------------------E 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             +  G +          + + N    P       Q   E +R        S   +++ +
Sbjct: 38  KGSYGGRI-------NDTYEIRNY---PGTIVDSGQHLMERFREHAA----SHPTVELKR 83

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             V     E ++   +  +     +  +VVL  GT  R +   G+ +   
Sbjct: 84  TTVTKIRKEGDLFV-VETKRRGDFKAHSVVLDLGTRPRELGIKGEQEFTG 132


>gi|205355941|ref|ZP_03222709.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CG8421]
 gi|205346065|gb|EDZ32700.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CG8421]
          Length = 667

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|170738375|ref|YP_001767030.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium sp. 4-46]
 gi|168192649|gb|ACA14596.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium sp. 4-46]
          Length = 299

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTI-GSMSCNP-AIGGLG 54
           YDVI++GGG AG  AA V  +   +  L+         T + +   G   C P A+   G
Sbjct: 2   YDVIIVGGGPAGLSAALVLGRCRRTVLLLDAGHPRNAVTPRMNGYLGHDGCPPGALRDQG 61

Query: 55  KGHL-------VREIDALD------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           +  L       VR+ D  D      G    +AD      R L +  G A   P  +  R+
Sbjct: 62  RAELSRYPTVEVRDADVADARRDEEGFTVVLADGRREAARRLVLATGLATELPPVEGFRD 121

Query: 102 LYRLAMQR 109
            +   +  
Sbjct: 122 FWGRGVHH 129


>gi|148926500|ref|ZP_01810183.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CG8486]
 gi|145844663|gb|EDK21769.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CG8486]
          Length = 667

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|147919055|ref|YP_687215.1| pyruvate dehydrogenase complex E3, dihydrolipoamide dehydrogenase
           [uncultured methanogenic archaeon RC-I]
 gi|110622611|emb|CAJ37889.1| pyruvate dehydrogenase complex E3, dihydrolipoamide dehydrogenase
           [uncultured methanogenic archaeon RC-I]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDAL 65
           DV+VIG G AG  AA    ++G    L+  +   I     C P  G      +VR +D +
Sbjct: 11  DVLVIGAGPAGYTAAIRLGQMGMDVTLVGPEIGGICLNHGCIPVKG------IVRTLDLV 64

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
             +    A         +++ K  A      Q  R+L   A  R +L+   + + +G  
Sbjct: 65  ADVTAAEARGIKAHGVEVDLNKVQAWN---AQVIRKL--QAGIRSLLNASGVQLFEGTC 118


>gi|86357473|ref|YP_469365.1| soluble pyridine nucleotide transhydrogenase [Rhizobium etli CFN
          42]
 gi|86281575|gb|ABC90638.1| probable pyridine nucleotide transhydrogenase protein [Rhizobium
          etli CFN 42]
          Length = 478

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 13 QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 44


>gi|89901655|ref|YP_524126.1| hypothetical protein Rfer_2884 [Rhodoferax ferrireducens T118]
 gi|89346392|gb|ABD70595.1| HI0933-like protein [Rhodoferax ferrireducens T118]
          Length = 414

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          +++DV+V+G G AG   A VA +LG    +I H    +  
Sbjct: 2  QNFDVVVMGAGAAGLFCAGVAGQLGLKVLVIDHS-DKVAE 40


>gi|33597741|ref|NP_885384.1| dihydrolipoamide dehydrogenase [Bordetella parapertussis 12822]
 gi|33574169|emb|CAE38500.1| 2-oxoglutarate dehydrogenase complex, E3 component [Bordetella
          parapertussis]
          Length = 475

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV++IG G  G  AA  AA+LG S A I
Sbjct: 1  MSKQFDVVIIGAGPGGYIAAIRAAQLGMSVACI 33


>gi|15922087|ref|NP_377756.1| hypothetical protein ST1775 [Sulfolobus tokodaii str. 7]
 gi|15622875|dbj|BAB66865.1| 384aa long hypothetical fixC protein [Sulfolobus tokodaii str. 7]
          Length = 384

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD IVIG G +G  +A   AK G    LI
Sbjct: 2  KYDAIVIGAGPSGSASAYTLAKNGYKVLLI 31


>gi|329897380|ref|ZP_08272060.1| FAD dependent oxidoreductase [gamma proteobacterium IMCC3088]
 gi|328921220|gb|EGG28621.1| FAD dependent oxidoreductase [gamma proteobacterium IMCC3088]
          Length = 377

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 11/78 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +N+  DV+VIGGG  G       AK G +  L+               +G    G     
Sbjct: 1  MNKHADVLVIGGGIVGTSCTYFLAKAGINVILLE-----------KNRLGQHASGTNFGN 49

Query: 62 IDALDGLMGRVADAAGIQ 79
          I      M ++A AA   
Sbjct: 50 IRRQGRPMTQLAMAARAN 67


>gi|323465989|gb|ADX69676.1| Thioredoxin reductase [Lactobacillus helveticus H10]
          Length = 307

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD++VIG G  G  AA   A+     A+I                          +  
Sbjct: 2   KEYDLVVIGAGPGGMTAAMYGARANLKVAMI--------------------------DRG 35

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G M   A+       V N    P++ GP      ++Y+ A ++ +        + G+
Sbjct: 36  VYGGQMNNTAE-------VENYPGFPSIMGPDLG--EKMYKSATEQGVE------FVYGD 80

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           V     +      IV  D   I    V++ TG+  R +   G+ +   
Sbjct: 81  VQKIELDGQK--RIVKMDPEDITAKAVIIATGSTNRKLGIPGEEEYSG 126


>gi|218678388|ref|ZP_03526285.1| FAD dependent oxidoreductase [Rhizobium etli CIAT 894]
          Length = 352

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 45/125 (36%)

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           I+ EV   N E + I S++ +    I C T+V T+GT  R V  +  L IP      S  
Sbjct: 181 IEDEVVAVNREGDRIVSVITRSGQTIGCGTMVNTSGTNGRNVARMAGLDIPIEPRRRSLF 240

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
                + ++         TG   R +GK  +     K   +     F  M  +  +    
Sbjct: 241 VVDCRTPLEGKVGLTIDPTGVFFRPEGKFYLVATYPKHDPEVDPNDFDVMHAEFDDEIWP 300

Query: 240 CGITR 244
               R
Sbjct: 301 TLANR 305


>gi|86139825|ref|ZP_01058391.1| rubredoxin reductase [Roseobacter sp. MED193]
 gi|85823454|gb|EAQ43663.1| rubredoxin reductase [Roseobacter sp. MED193]
          Length = 409

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKT-------STIGSMSCNPAIGGLGKG-HLV 59
           V+VIGGG  G EAAA+ A  G S +++           S+I + +    + G G   HL 
Sbjct: 145 VVVIGGGFIGLEAAAMLAARGLSVSVVELAPRLLGRAVSSITAQTIASYLEGEGVSLHLD 204

Query: 60  REIDALDGLMGRVAD 74
             I+A+DG  GRV D
Sbjct: 205 TAIEAIDGQNGRVTD 219


>gi|322688748|ref|YP_004208482.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460084|dbj|BAJ70704.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   ALI                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALIERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|300782850|ref|YP_003763141.1| dihydrolipoamide dehydrogenase [Amycolatopsis mediterranei U32]
 gi|299792364|gb|ADJ42739.1| dihydrolipoamide dehydrogenase [Amycolatopsis mediterranei U32]
          Length = 466

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLGKGHLV 59
           ++++GGG AG EAA VAA+ GA   ++              + S +   + G L K H +
Sbjct: 4   IVIMGGGPAGYEAALVAAQHGADVTIVERDGLGGACVLYDCVPSKTFIASSGALAKMHDL 63

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E+     +     D   +  RV    KG A+   ++   R   +    R I  +     
Sbjct: 64  GELGINTDMADTRIDLPTVHGRV----KGLALA--QSADIRARVQREGVRVIAGEAR--- 114

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
              E  G  T K    ++  +D +  +    V++ TG   R
Sbjct: 115 FCDEEPGLATHK---VAVTTKDGTEKLPADVVLIATGATPR 152


>gi|295398890|ref|ZP_06808872.1| FAD dependent oxidoreductase [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|312110503|ref|YP_003988819.1| glycerol-3-phosphate dehydrogenase [Geobacillus sp. Y4.1MC1]
 gi|294978356|gb|EFG53952.1| FAD dependent oxidoreductase [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|311215604|gb|ADP74208.1| Glycerol-3-phosphate dehydrogenase [Geobacillus sp. Y4.1MC1]
          Length = 550

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  + YD++V+GGG  GC  A  A   G  TAL+  +
Sbjct: 18 MSKKHYDILVVGGGITGCGIALDAVSRGMKTALVEMQ 54


>gi|322417705|ref|YP_004196928.1| amine oxidase [Geobacter sp. M18]
 gi|320124092|gb|ADW11652.1| amine oxidase [Geobacter sp. M18]
          Length = 399

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 4  RSYDVIVIGGGHAG-CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-- 60
          + +D IVIG G +G   A+  AAK G  T +I  K+   G    +    G   G  +   
Sbjct: 2  KQFDAIVIGAGISGLSFASYAAAK-GLKTLVIE-KSDRPGGCFHSHRFEGSAAGFWLELG 59

Query: 61 ------------EIDALDGLMGRVADAAGIQFRVL 83
                      E+   +GLMG +     + F++L
Sbjct: 60 AHTCYNSYGGLLELMERNGLMGSILPREKVSFKML 94


>gi|224535190|ref|ZP_03675729.1| hypothetical protein BACCELL_00051 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523193|gb|EEF92298.1| hypothetical protein BACCELL_00051 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 534

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 53/178 (29%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPIIVERGKNVRDRKKDLAQISREHTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +        +  +     E + I  I       I    V+L TG   R V 
Sbjct: 198 ENMRNTILECGGEVHFETRMEALIIENDEIKGIETHTGQTILGP-VILATGHSARDVY 254


>gi|254439348|ref|ZP_05052842.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Octadecabacter antarcticus 307]
 gi|198254794|gb|EDY79108.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,
           putative [Octadecabacter antarcticus 307]
          Length = 402

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITH 36
           +VIGGG+ G EAAAVAAK+G    L+  
Sbjct: 148 LVIGGGYIGLEAAAVAAKMGLHVTLVEM 175


>gi|311271723|ref|XP_001926734.2| PREDICTED: pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2-like [Sus scrofa]
          Length = 582

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD +VIG GH G  AAA   +LG +T + 
Sbjct: 32 LKSEYDAVVIGAGHNGLVAAAYLQRLGVNTVVF 64


>gi|158338132|ref|YP_001519308.1| tryptophan halogenase [Acaryochloris marina MBIC11017]
 gi|158308373|gb|ABW29990.1| tryptophan halogenase, putative [Acaryochloris marina MBIC11017]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGKGHLVR 60
           ++DV VIGGG AG   +   A LG    +I      + + IG+      +  L    +  
Sbjct: 8   TFDVCVIGGGPAGSVVSHRLASLGYKVCIIESQKFPRPNHIGASLLPSTLPLLDCIGVRE 67

Query: 61  EIDALDGLMGR--VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            ++    L+    +   +       N  + P     R Q D+ L + A +  +   +   
Sbjct: 68  SVENTGFLLHERTIVWWSETFPIYKNQHEQPGFHVDRGQFDQLLLQNAKENGVEVHQPAH 127

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + E     T+K  I          I    VV  +G
Sbjct: 128 AFRPE--RIKTQKWQIRIRQDGMQRTILSKIVVDASG 162


>gi|152977376|ref|YP_001376893.1| thioredoxin reductase [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152026128|gb|ABS23898.1| thioredoxin reductase [Bacillus cytotoxicus NVH 391-98]
          Length = 318

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|148254006|ref|YP_001238591.1| putative succinate dehydrogenase [Bradyrhizobium sp. BTAi1]
 gi|146406179|gb|ABQ34685.1| putative Succinate dehydrogenase [Bradyrhizobium sp. BTAi1]
          Length = 578

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++DVIV+G G AG  AA  A   GAS  ++
Sbjct: 9  QAFDVIVVGSGAAGLTAAWHARNRGASVLVV 39


>gi|146328209|emb|CAM58125.1| 2-oxoglutarate dehydrogenase [uncultured marine microorganism]
          Length = 475

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + RS+DV+VIG G AG  AA  A++ G + A I
Sbjct: 1  MGRSFDVVVIGAGPAGYVAAIRASQHGMNVACI 33


>gi|144898936|emb|CAM75800.1| Hdr-like menaquinol oxidoreductase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 650

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 16/38 (42%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V VIGGG AG  AA    K G +  L        G M 
Sbjct: 150 VAVIGGGPAGLSAAYQLRKRGIAVTLFEANAELGGFMR 187


>gi|121607746|ref|YP_995553.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
 gi|121552386|gb|ABM56535.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
          Length = 384

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV ++GGG  G  AA    + G    L+ H  
Sbjct: 18 DVAIVGGGIVGASAALALRRKGVDVLLLEHDL 49


>gi|332686436|ref|YP_004456210.1| thioredoxin reductase [Melissococcus plutonius ATCC 35311]
 gi|332370445|dbj|BAK21401.1| thioredoxin reductase [Melissococcus plutonius ATCC 35311]
          Length = 309

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG   A  AA+   S  +I
Sbjct: 2  YDVIIIGAGPAGMTTALYAARSNLSVLVI 30


>gi|319647888|ref|ZP_08002106.1| thioredoxin reductase [Bacillus sp. BT1B_CT2]
 gi|317390229|gb|EFV71038.1| thioredoxin reductase [Bacillus sp. BT1B_CT2]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 7  EKMYDVIIIGAGPAGMTAAVYTSRANLSTLMV 38


>gi|302036562|ref|YP_003796884.1| soluble pyridine nucleotide transhydrogenase [Candidatus
          Nitrospira defluvii]
 gi|300604626|emb|CBK40958.1| Soluble pyridine nucleotide transhydrogenase [Candidatus
          Nitrospira defluvii]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YD++VIG G AG +AA  AAKLG    ++  K
Sbjct: 3  HYDLLVIGTGPAGQKAAIQAAKLGKKVGIVERK 35


>gi|262383076|ref|ZP_06076213.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_33B]
 gi|262295954|gb|EEY83885.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_33B]
          Length = 448

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA+ G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAERAAQGGLSTILFEKN 34


>gi|254563851|ref|YP_003070946.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylobacterium extorquens DM4]
 gi|254271129|emb|CAX27136.1| putative FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase; putative nitrate or nitrite reductase
           subunit [Methylobacterium extorquens DM4]
          Length = 406

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           +VIGGG  G EAA   A+LG  T LI H    +     +          LVR  ++A   
Sbjct: 150 VVIGGGLLGLEAAVGLARLGVDTTLI-HVMDRVMERQLDHTAA-----RLVRTAMEARGV 203

Query: 68  LMGRVADAAGIQ----FRVLNVKKGPAVRGP 94
            +   AD A I+       L +K G  +   
Sbjct: 204 KVMLSADTAAIEGDGRVERLRMKDGSVIPAD 234


>gi|242241325|ref|YP_002989506.1| HI0933 family protein [Dickeya dadantii Ech703]
 gi|242133382|gb|ACS87684.1| HI0933 family protein [Dickeya dadantii Ech703]
          Length = 397

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DV+VIG G AG   AA A + G    L+
Sbjct: 2  EQFDVVVIGAGAAGLFCAAQAGQRGLRVLLV 32


>gi|255505386|ref|ZP_05345785.3| thioredoxin-disulfide reductase [Bryantella formatexigens DSM
          14469]
 gi|255268187|gb|EET61392.1| thioredoxin-disulfide reductase [Bryantella formatexigens DSM
          14469]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN------PAIGGLGK 55
          +   YDV++IGGG  G  AA   A+ G  T L   K S  G M         P       
Sbjct: 16 MKHIYDVMIIGGGPGGYTAALYGARAGLDTILFE-KMSVGGQMVQTEQIDNYPGFEEGID 74

Query: 56 GHLVREIDALDGLMGRVADAAGIQFR 81
          G L+ E       M + A+  G Q R
Sbjct: 75 GFLLGE------KMRKGAERFGAQTR 94


>gi|196233025|ref|ZP_03131874.1| tryptophan halogenase [Chthoniobacter flavus Ellin428]
 gi|196223003|gb|EDY17524.1| tryptophan halogenase [Chthoniobacter flavus Ellin428]
          Length = 430

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  Y+VI+IG G AG   AA+ A+ G    ++
Sbjct: 11 MSNQYEVIIIGAGPAGTTTAALLAEKGRRVLVL 43


>gi|126726200|ref|ZP_01742042.1| soluble pyridine nucleotide transhydrogenase [Rhodobacterales
          bacterium HTCC2150]
 gi|126705404|gb|EBA04495.1| soluble pyridine nucleotide transhydrogenase [Rhodobacterales
          bacterium HTCC2150]
          Length = 468

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD+IVIG G AG   A  AAKL  S  ++
Sbjct: 1  MKKHYDLIVIGSGPAGRSGALQAAKLKKSVLVV 33


>gi|124022932|ref|YP_001017239.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. MIT 9303]
 gi|123963218|gb|ABM77974.1| Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. MIT 9303]
          Length = 551

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI   Y+VIVIG G  G  AA   A+ G    ++         +S   A+G      L R
Sbjct: 1  MIQHPYEVIVIGSGATGGVAALTLAEAGVRVLVVEAGPD----LSAQKALGSEPGNTLRR 56

Query: 61 EIDALDG 67
                G
Sbjct: 57 LDGLCSG 63


>gi|126433235|ref|YP_001068926.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. JLS]
 gi|126233035|gb|ABN96435.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. JLS]
          Length = 466

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG +TA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLNTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G      G  F
Sbjct: 63 TKETKTFGISGEATFDYGAAF 83


>gi|33863175|ref|NP_894735.1| glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. MIT 9313]
 gi|33635092|emb|CAE21078.1| Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
          [Prochlorococcus marinus str. MIT 9313]
          Length = 551

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI   Y+VIVIG G  G  AA   A+ G    ++         +S   A+G      L R
Sbjct: 1  MIQHPYEVIVIGSGATGGVAALTLAEAGVRVLVVEAGPD----LSAQKALGSEPGNTLRR 56

Query: 61 EIDALDG 67
                G
Sbjct: 57 LDGLCSG 63


>gi|159903544|ref|YP_001550888.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9211]
 gi|159888720|gb|ABX08934.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9211]
          Length = 449

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          + VIGGG +G  AA + AK G  T +   K     +  C    GG     +V E D  D 
Sbjct: 4  IAVIGGGPSGSCAAEILAKAGIKTWIFERKLD--NAKPC----GGAIPLCMVSEFDLPDS 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      R+++  
Sbjct: 58 ----IIDRKVRNMRMISPS 72


>gi|304413333|ref|ZP_07394806.1| lipoamide dehydrogenase [Candidatus Regiella insecticola LSR1]
 gi|304284176|gb|EFL92569.1| lipoamide dehydrogenase [Candidatus Regiella insecticola LSR1]
          Length = 499

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 1  MINRSY--DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLG 54
          M+++     V+VIG G AG  AA   A LG  T L+  +  T+G    ++ C P+   L 
Sbjct: 24 MMSKKIKTQVVVIGAGPAGYSAAFRCADLGLETVLVE-RYDTLGGVCLNVGCIPSKALLH 82

Query: 55 KGHLVREIDALDG 67
             ++ E  A+  
Sbjct: 83 VAKVINEAKAIGN 95


>gi|298374035|ref|ZP_06983993.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 3_1_19]
 gi|298268403|gb|EFI10058.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 3_1_19]
          Length = 448

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA+ G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAERAAQGGLSTILFEKN 34


>gi|295677829|ref|YP_003606353.1| HI0933 family protein [Burkholderia sp. CCGE1002]
 gi|295437672|gb|ADG16842.1| HI0933 family protein [Burkholderia sp. CCGE1002]
          Length = 422

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V VIGGG AG  AA   A+ G    +       + S+     + G G  ++   
Sbjct: 10 VAVIGGGPAGLMAAETLARRGVQVHVY----DAMPSVGRKFLMAGKGGMNITHS 59


>gi|262038086|ref|ZP_06011491.1| dihydrolipoyl dehydrogenase [Leptotrichia goodfellowii F0264]
 gi|261747906|gb|EEY35340.1| dihydrolipoyl dehydrogenase [Leptotrichia goodfellowii F0264]
          Length = 582

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
              +DV+VIGGG AG  AA  AA+LG   A++
Sbjct: 124 EDEFDVVVIGGGPAGYVAAIRAAQLGGKIAVV 155


>gi|302410929|ref|XP_003003298.1| monoamine oxidase N [Verticillium albo-atrum VaMs.102]
 gi|261358322|gb|EEY20750.1| monoamine oxidase N [Verticillium albo-atrum VaMs.102]
          Length = 517

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YDV+V+G G+ G  AA  AA  G    L+  +   IG  S +  IGG
Sbjct: 40 YDVVVVGAGYCGLTAARDAAVAGLKVLLLEGR-DRIGGRSWSSDIGG 85


>gi|255019056|ref|ZP_05291182.1| thioredoxin reductase [Listeria monocytogenes FSL F2-515]
          Length = 74

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|255004389|ref|ZP_05279190.1| dihydrolipoamide dehydrogenase (lpdA) [Anaplasma marginale str.
          Virginia]
          Length = 470

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDV VIG G  G + A  AAKLG   A
Sbjct: 5  DYDVAVIGAGPGGYKCALKAAKLGLKVA 32


>gi|254995095|ref|ZP_05277285.1| dihydrolipoamide dehydrogenase (lpdA) [Anaplasma marginale str.
          Mississippi]
          Length = 471

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDV VIG G  G + A  AAKLG   A
Sbjct: 5  DYDVAVIGAGPGGYKCALKAAKLGLKVA 32


>gi|225873454|ref|YP_002754913.1| oxidoreductase, FAD-dependent [Acidobacterium capsulatum ATCC
          51196]
 gi|225794280|gb|ACO34370.1| oxidoreductase, FAD-dependent [Acidobacterium capsulatum ATCC
          51196]
          Length = 398

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          SYDV+VIG G AG   A  A K G   A++ H
Sbjct: 7  SYDVLVIGAGAAGLMCAIEAGKRGRRVAVLDH 38


>gi|222475276|ref|YP_002563692.1| dihydrolipoamide dehydrogenase (lpdA) [Anaplasma marginale str.
          Florida]
 gi|255003261|ref|ZP_05278225.1| dihydrolipoamide dehydrogenase (lpdA) [Anaplasma marginale str.
          Puerto Rico]
 gi|222419413|gb|ACM49436.1| dihydrolipoamide dehydrogenase (lpdA) [Anaplasma marginale str.
          Florida]
          Length = 471

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDV VIG G  G + A  AAKLG   A
Sbjct: 5  DYDVAVIGAGPGGYKCALKAAKLGLKVA 32


>gi|251798776|ref|YP_003013507.1| succinate dehydrogenase flavoprotein subunit [Paenibacillus sp.
          JDR-2]
 gi|247546402|gb|ACT03421.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Paenibacillus sp. JDR-2]
          Length = 585

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +IV+GGG AG  A   AA+ G    L +          C    G  G  +   E D
Sbjct: 6  IIVVGGGLAGLMATVKAAEAGVHVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|150009638|ref|YP_001304381.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Parabacteroides distasonis ATCC 8503]
 gi|256838688|ref|ZP_05544198.1| dihydrolipoyl dehydrogenase [Parabacteroides sp. D13]
 gi|149938062|gb|ABR44759.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Parabacteroides distasonis ATCC 8503]
 gi|256739607|gb|EEU52931.1| dihydrolipoyl dehydrogenase [Parabacteroides sp. D13]
          Length = 448

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA+ G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAERAAQGGLSTILFEKN 34


>gi|124516374|gb|EAY57882.1| Dihydrolipoamide dehydrogenase [Leptospirillum rubarum]
          Length = 462

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +  S+D++V+GGG AG   A  AA LG    L+   +  +G
Sbjct: 1  MEESFDLVVVGGGPAGYVGAIRAAHLGMKVGLVE--SDKVG 39


>gi|56416909|ref|YP_153983.1| dihydrolipoamide dehydrogenase [Anaplasma marginale str. St.
          Maries]
 gi|56388141|gb|AAV86728.1| dihydrolipoamide dehydrogenase [Anaplasma marginale str. St.
          Maries]
          Length = 471

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDV VIG G  G + A  AAKLG   A
Sbjct: 5  DYDVAVIGAGPGGYKCALKAAKLGLKVA 32


>gi|103486608|ref|YP_616169.1| FAD dependent oxidoreductase [Sphingopyxis alaskensis RB2256]
 gi|98976685|gb|ABF52836.1| FAD dependent oxidoreductase [Sphingopyxis alaskensis RB2256]
          Length = 421

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV VIGGG  G  AA   A+ G S  L+  +    G+   N
Sbjct: 30 DVAVIGGGFTGLSAALACAERGFSVILVEAEHVGFGASGRN 70


>gi|324992939|gb|EGC24859.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK405]
 gi|324994434|gb|EGC26347.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK678]
 gi|325687431|gb|EGD29452.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK72]
 gi|327462235|gb|EGF08562.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1]
 gi|327489590|gb|EGF21382.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis SK1058]
          Length = 461

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 19  YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 78

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   +   ++        L           ++ I
Sbjct: 79  EARRYG----IESKLERIDFEKLVDRKNQVIASLQSGIHASFKSL----------GIEYI 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           +G+          +      +   I    V+L TG++
Sbjct: 125 EGQAKFVKDRTFSV------NGKEISGKDVILATGSY 155


>gi|317487226|ref|ZP_07946024.1| BFD-like binding domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316921516|gb|EFV42804.1| BFD-like binding domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 460

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R +D +VIG G AG  AA+V A+ G    L+
Sbjct: 1  MSRQWDALVIGAGPAGLRAASVIAESGLEVVLV 33


>gi|305663729|ref|YP_003860017.1| thioredoxin reductase (NADPH) [Ignisphaera aggregans DSM 17230]
 gi|304378298|gb|ADM28137.1| thioredoxin reductase (NADPH) [Ignisphaera aggregans DSM 17230]
          Length = 328

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          I   ++ IVIG G AG  AA   A+ G    +++   
Sbjct: 12 IKDRFEAIVIGAGPAGLTAALYLARYGVDVCIVSKDL 48


>gi|312114094|ref|YP_004011690.1| dihydrolipoamide dehydrogenase [Rhodomicrobium vannielii ATCC
          17100]
 gi|311219223|gb|ADP70591.1| dihydrolipoamide dehydrogenase [Rhodomicrobium vannielii ATCC
          17100]
          Length = 466

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  ++DV VIGGG  G  AA  AA+LG  T +I
Sbjct: 1  MAEAFDVAVIGGGPGGYVAAIRAAQLGLKTVVI 33


>gi|260555071|ref|ZP_05827292.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii ATCC 19606]
 gi|260411613|gb|EEX04910.1| dihydrolipoyl dehydrogenase [Acinetobacter baumannii ATCC 19606]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+IVIG G  G  AA  AA+LG  TA++
Sbjct: 1  MSAAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIV 34


>gi|294889031|ref|XP_002772671.1| phytoene dehydrogenase, putative [Perkinsus marinus ATCC 50983]
 gi|239877092|gb|EER04487.1| phytoene dehydrogenase, putative [Perkinsus marinus ATCC 50983]
          Length = 589

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD+IVIGGGH G   AA  AK G    ++
Sbjct: 40 VEKEYDIIVIGGGHNGLITAAYLAKEGYDVLVL 72


>gi|294870860|ref|XP_002765827.1| phytoene dehydrogenase, putative [Perkinsus marinus ATCC 50983]
 gi|239866103|gb|EEQ98544.1| phytoene dehydrogenase, putative [Perkinsus marinus ATCC 50983]
          Length = 563

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD+IVIGGGH G   AA  AK G    ++
Sbjct: 14 VEKEYDIIVIGGGHNGLITAAYLAKEGYDVLVL 46


>gi|150402502|ref|YP_001329796.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methanococcus maripaludis C7]
 gi|150033532|gb|ABR65645.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Methanococcus maripaludis C7]
          Length = 384

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + V+GGG AG   A   A+ G    L    
Sbjct: 2  IAVVGGGPAGLSCAHALARRGLEVELYEMD 31


>gi|325188453|emb|CCA22989.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 494

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+IVIGGG  G  AA  AA+LG  T  I
Sbjct: 26 EYDLIVIGGGPGGYVAAIKAAQLGMKTVCI 55


>gi|325261397|ref|ZP_08128135.1| 2-enoate reductase [Clostridium sp. D5]
 gi|324032851|gb|EGB94128.1| 2-enoate reductase [Clostridium sp. D5]
          Length = 655

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           +VI+IGGG  GCE A + A+ G +  +I  
Sbjct: 498 NVIIIGGGLTGCEIAYMLAREGKTVIIIEM 527


>gi|320353744|ref|YP_004195083.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfobulbus propionicus DSM 2032]
 gi|320122246|gb|ADW17792.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfobulbus propionicus DSM 2032]
          Length = 309

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDV+++G G AG  AA  A +      ++
Sbjct: 1  MENIYDVVIVGAGPAGMTAAIYAIRANMRVLML 33


>gi|312960157|ref|ZP_07774669.1| hypothetical protein PFWH6_2062 [Pseudomonas fluorescens WH6]
 gi|311285651|gb|EFQ64220.1| hypothetical protein PFWH6_2062 [Pseudomonas fluorescens WH6]
          Length = 377

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          MI     V+VIGGG +G  AA   A+ G    L+         + C    G    G  +R
Sbjct: 1  MIAAVNKVLVIGGGFSGMTAAIQLARQGIEVDLVEIDP-----LWCPLGAGITLSGPTLR 55

Query: 61 EIDALD 66
           +D + 
Sbjct: 56 ALDTVG 61


>gi|294677920|ref|YP_003578535.1| glutathione-disulfide reductase [Rhodobacter capsulatus SB 1003]
 gi|294476740|gb|ADE86128.1| glutathione-disulfide reductase [Rhodobacter capsulatus SB 1003]
          Length = 450

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 42/168 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +D+ VIGGG  G  AA +AA  GA  AL                           E
Sbjct: 1   MSFDFDLFVIGGGSGGVRAARIAAGYGARVAL--------------------------AE 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR---------TQADRELYRLAMQREIL 112
            D + G    V      +  ++     PA                 D   +R  +  E+ 
Sbjct: 35  EDRMGGTC--VIRGCVPKKLMVFASTMPAAVAEARAYGWDAAIGGFDWGAFRAKLHAELD 92

Query: 113 SQENLDVIQGEVAGFNTEKNI--ISS---IVMQDNSMIRCSTVVLTTG 155
             E +     + AG         +     + + D  +I    +++  G
Sbjct: 93  RLERIYRAGQQNAGVTVHDCRATVKGPHEVALADGRVISAKHILIAVG 140


>gi|281357317|ref|ZP_06243806.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Victivallis vadensis ATCC BAA-548]
 gi|281316348|gb|EFB00373.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Victivallis vadensis ATCC BAA-548]
          Length = 567

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 127/445 (28%), Gaps = 98/445 (22%)

Query: 1   MINRSY----DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           M+ ++     D +V+GGG AG  AA  AA+ GA T +          +   P  GG    
Sbjct: 1   MMVKTRELCADFVVVGGGMAGLCAAVAAARNGAKTVI----------IQDRPMFGGNASS 50

Query: 57  HLVREIDALD-GLMGRVADAAGI--QFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREIL 112
               EI     G  G      G+  + ++ N    P     R    D  +Y  A++    
Sbjct: 51  ----EIRMWICGAHGPNRKETGLLEELQLDNYYYNP---ELRFTIWDDVMYSFAIRE--- 100

Query: 113 SQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMIRCS---------------TVVLTTGT 156
              NL V +   V     E   I+S+    N +                    + L+   
Sbjct: 101 --PNLRVLLNSSVEKVEVENGKITSV-TAWNLVEYTRYKVSGKLFSDCSGDGILRLSGAK 157

Query: 157 FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTII--WDKT 214
           F +G     +         +       +  ++    T   +                 K 
Sbjct: 158 FRQGREGRDEFDESHAPEVEDKKTMGNSILIQLR-RTSAHRPFRAPEWAYHYTDETAPKR 216

Query: 215 EKQFADERLIPFSF------MTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIK 268
                        F      +TD    R     I          I  +            
Sbjct: 217 NLMPEGNNFWWMEFGGVKDTITDAEEIRDELYKIAY---GVWEYIKNHPDGRGH------ 267

Query: 269 SYGPRYCPSIE--DKIVRF-GERNGHQIFLEPEGLNTDVVYPNGIST--ALPEEIQHQFI 323
            +   +  S+    + +RF G+    Q  +E EG   D V   G +     PE I +   
Sbjct: 268 GWELDWIGSLPGKRESIRFVGDHILCQKEVEAEGKFKDSVCYGGWTMDDHHPEAIYY--- 324

Query: 324 RTIPGLEKVNIIRPG---YAIEYDYINPKELFPTLETKKISGLFLAG-QINGTTGYEEA- 378
              PG     I  P    + I Y          +L +  I  LF AG QI+ T     + 
Sbjct: 325 ---PG--APTIFHPAPSPFGIPY---------RSLYSVNIDNLFFAGRQISTTHMALSST 370

Query: 379 ------AAQGLVAGINSARKSNKLD 397
                 A  G   G  +A      +
Sbjct: 371 RVMATTAMMGQAVGTAAAIALRHGE 395


>gi|255013081|ref|ZP_05285207.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Bacteroides sp. 2_1_7]
          Length = 448

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA+ G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAERAAQGGLSTILFEKN 34


>gi|240172629|ref|ZP_04751288.1| dehydrogenase [Mycobacterium kansasii ATCC 12478]
          Length = 518

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YD IVIG GH G  AA +  + G  T  +  K
Sbjct: 3  DYDAIVIGAGHNGLTAAVLLQRAGLRTVCLEAK 35


>gi|221640304|ref|YP_002526566.1| hypothetical protein RSKD131_2205 [Rhodobacter sphaeroides KD131]
 gi|221161085|gb|ACM02065.1| HI0933 family protein [Rhodobacter sphaeroides KD131]
          Length = 392

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          D +VIGGG AG  AA   A+ G  T +   K S
Sbjct: 2  DALVIGGGPAGLMAAEELARAGLRTVICEAKPS 34


>gi|254438454|ref|ZP_05051948.1| FAD binding domain protein [Octadecabacter antarcticus 307]
 gi|198253900|gb|EDY78214.1| FAD binding domain protein [Octadecabacter antarcticus 307]
          Length = 621

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 28/228 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     DV V+G G AG   A   A  G     I+           +P +          
Sbjct: 32  MNTLETDVTVVGSGPAGSTMALALASYGIKVTFIS------RYRWTSPTLRAHITNQRTM 85

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG---PRTQADRELYRLAMQREILS-QEN 116
           EI    G+       A  Q ++ N     ++ G    R Q          +  + S    
Sbjct: 86  EILRDFGIEQEALADASPQSQMANTVFCTSLAGQELGRVQPWGNHPARLAEYTMFSTTSM 145

Query: 117 LDVIQGEVAGFNTEKNIISS------------IVMQDNSMIRCSTVVLTTGTFLRGVIH- 163
            D+ Q  +        +               +   D   ++    +      +R     
Sbjct: 146 CDLPQTYMEPLLVSNALKRGADVRFNTFFQPFVETSDGISVQAEDRLTGAPFDIRAKYLV 205

Query: 164 -----IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG 206
                   +   AG   +     + ++ ++F+ D   L    P+ L  
Sbjct: 206 GADGGNSLVAEQAGLSFEGAMGIVGSTNIEFEADLSALTVHRPSVLYC 253


>gi|218437730|ref|YP_002376059.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7424]
 gi|218170458|gb|ACK69191.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7424]
          Length = 563

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          +SYDVI+IG GH G   AA   K G S  L+  ++   G+ +   A+     G
Sbjct: 2  QSYDVIIIGAGHNGLVCAAYLLKAGYSVLLLEKRSVPGGAATTEEALPEEAPG 54


>gi|157413189|ref|YP_001484055.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9215]
 gi|157387764|gb|ABV50469.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9215]
          Length = 444

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKSGIKTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      ++++  
Sbjct: 58 ----IIDRKVRNMKMISPS 72


>gi|52082023|ref|YP_080814.1| thioredoxin reductase [Bacillus licheniformis ATCC 14580]
 gi|52787411|ref|YP_093240.1| hypothetical protein BLi03728 [Bacillus licheniformis ATCC 14580]
 gi|52005234|gb|AAU25176.1| thioredoxin reductase [Bacillus licheniformis ATCC 14580]
 gi|52349913|gb|AAU42547.1| TrxB [Bacillus licheniformis ATCC 14580]
          Length = 316

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST ++
Sbjct: 4  EKMYDVIIIGAGPAGMTAAVYTSRANLSTLMV 35


>gi|116691670|ref|YP_837203.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia cenocepacia HI2424]
 gi|116649670|gb|ABK10310.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia cenocepacia HI2424]
          Length = 304

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGK--GHL 58
           ++  ++VIVIGG  AG  AA   A+      +I   +     +   +   G  GK    +
Sbjct: 1   MDTHHEVIVIGGSFAGLSAAMQLARARRRVLVIDAGRPRNRFAEHAHGFFGQDGKPPARI 60

Query: 59  VREIDAL----------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           V E  A           DG        A  +F V          G R  ADR +    ++
Sbjct: 61  VAEASAQLAAYPTVQRIDGEARTAERDAHGRFHVTLA------DGSRASADRLILATGIR 114

Query: 109 REILSQENLDVIQG 122
            E+ +   L    G
Sbjct: 115 DELPALPGLAERWG 128


>gi|113477236|ref|YP_723297.1| geranylgeranyl reductase [Trichodesmium erythraeum IMS101]
 gi|110168284|gb|ABG52824.1| geranylgeranyl reductase [Trichodesmium erythraeum IMS101]
          Length = 368

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D I+IG G AG  AA   AK G S  +I
Sbjct: 2  FDCIIIGAGPAGSTAAYHLAKKGRSVLVI 30


>gi|321444849|gb|EFX60525.1| hypothetical protein DAPPUDRAFT_71528 [Daphnia pulex]
          Length = 345

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 27/157 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS----------TIGSMSCNPAIGGLGKG 56
           DVI++G G  G   A   AK G    +I                 G +    ++G +   
Sbjct: 22  DVIIVGAGTTGASMAMGLAKQGKKVLVIEKCMDYQDRFVGELMQPGGLRALRSLGLIDCA 81

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVL--------------NVKKGPAVRGPRTQADREL 102
               +I  L   +        I                   +   G A +  R       
Sbjct: 82  ETEDDIKTLGYTIISTKRKENIMLHYPKRIPQTIAEFLGFNDTNNGTAAQYGRG-FHNGA 140

Query: 103 YRLAMQREILSQENLDVIQGEVAGF--NTEKNIISSI 137
           +   ++  +L + N+ VI+G V     N++ N  + +
Sbjct: 141 FVQRIRERMLQEPNITVIEGTVIKLTSNSKTNECTGV 177


>gi|317489345|ref|ZP_07947859.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325832650|ref|ZP_08165448.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|316911590|gb|EFV33185.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325485971|gb|EGC88431.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 580

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 23/45 (51%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           DV+V+G G AG   A  AA+ G S  LI   T  I     N AIG
Sbjct: 77  DVVVVGAGMAGTCCAVSAAEGGLSVILIDAGTKAISRGGSNQAIG 121


>gi|301307631|ref|ZP_07213588.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 20_3]
 gi|300834305|gb|EFK64918.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 20_3]
          Length = 448

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA+ G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAERAAQGGLSTILFEKN 34


>gi|260584589|ref|ZP_05852335.1| thioredoxin-disulfide reductase [Granulicatella elegans ATCC
          700633]
 gi|260157612|gb|EEW92682.1| thioredoxin-disulfide reductase [Granulicatella elegans ATCC
          700633]
          Length = 315

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1  MINRS--YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+     YDVI+IG G  G  AA  A++    T ++
Sbjct: 1  MMEERTIYDVIIIGSGPGGMTAALYASRANLKTLIL 36


>gi|260462893|ref|ZP_05811097.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum
          WSM2075]
 gi|259031287|gb|EEW32559.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum
          WSM2075]
          Length = 372

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          DVIV+GGG  G  +A   A+ GA   LI      IG+ +   + G +
Sbjct: 2  DVIVLGGGLMGTASAYFLARRGARVTLIERN--RIGTGATVASFGNI 46


>gi|307153377|ref|YP_003888761.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
 gi|306983605|gb|ADN15486.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
          Length = 547

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           SYDVI+IG GH G   AA   K G    L+
Sbjct: 2  ESYDVIIIGAGHNGLVCAAYLLKAGYKVLLL 32


>gi|154283981|ref|XP_001542786.1| hypothetical protein HCAG_02957 [Ajellomyces capsulatus NAm1]
 gi|150410966|gb|EDN06354.1| hypothetical protein HCAG_02957 [Ajellomyces capsulatus NAm1]
          Length = 484

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLGK 55
           +   DV+++G G AGC  A    K G S  L+     +   I      P    A+  LG 
Sbjct: 31  DHEADVVIVGAGIAGCALAVTLGKQGRSVLLLERWLKEPDRIVGELLQPGGVRALDQLGL 90

Query: 56  GHLVREIDALDGLMGRVADA-AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            H + +IDA++     V    + +  R    ++G   +G      R  + + ++    + 
Sbjct: 91  KHCLEDIDAIECHGMDVIYHGSEVPIRYPADEQGSPFKGRSFHHGR--FIMRLRESARAT 148

Query: 115 ENLDVIQGEVAGFNTE--KNIISSIV-MQDNSM--IRCSTVVLTTGTFLRGV 161
            N+ +++            N +  +    +            +  G   +  
Sbjct: 149 PNVTIVETTAVSVIHSSTDNEVLGVQCTTNGQKDYFYAPLTFIADGYASKFR 200


>gi|150008243|ref|YP_001302986.1| ribulose-1,5-biphosphate synthetase [Parabacteroides distasonis
          ATCC 8503]
 gi|255015388|ref|ZP_05287514.1| ribulose-1,5-biphosphate synthetase [Bacteroides sp. 2_1_7]
 gi|256839475|ref|ZP_05544984.1| thiazole biosynthesis enzyme [Parabacteroides sp. D13]
 gi|262382227|ref|ZP_06075365.1| thiazole biosynthesis enzyme [Bacteroides sp. 2_1_33B]
 gi|298375183|ref|ZP_06985140.1| thiazole biosynthesis enzyme [Bacteroides sp. 3_1_19]
 gi|301309256|ref|ZP_07215200.1| thiazole biosynthesis enzyme [Bacteroides sp. 20_3]
 gi|149936667|gb|ABR43364.1| thiamine biosynthetic enzyme [Parabacteroides distasonis ATCC
          8503]
 gi|256738405|gb|EEU51730.1| thiazole biosynthesis enzyme [Parabacteroides sp. D13]
 gi|262297404|gb|EEY85334.1| thiazole biosynthesis enzyme [Bacteroides sp. 2_1_33B]
 gi|298267683|gb|EFI09339.1| thiazole biosynthesis enzyme [Bacteroides sp. 3_1_19]
 gi|300832938|gb|EFK63564.1| thiazole biosynthesis enzyme [Bacteroides sp. 20_3]
          Length = 256

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV ++GGG +G  AA   AK G   AL   K 
Sbjct: 24 DVAIVGGGPSGIVAAYFLAKAGKKVALFDRKL 55


>gi|146319391|ref|YP_001199103.1| hypothetical protein SSU05_1737 [Streptococcus suis 05ZYH33]
 gi|146321594|ref|YP_001201305.1| hypothetical protein SSU98_1747 [Streptococcus suis 98HAH33]
 gi|253752414|ref|YP_003025555.1| thioredoxin reductase [Streptococcus suis SC84]
 gi|253754240|ref|YP_003027381.1| thioredoxin reductase [Streptococcus suis P1/7]
 gi|330833355|ref|YP_004402180.1| hypothetical protein SSUST3_1577 [Streptococcus suis ST3]
 gi|145690197|gb|ABP90703.1| unknown protein [Streptococcus suis 05ZYH33]
 gi|145692400|gb|ABP92905.1| unknown protein [Streptococcus suis 98HAH33]
 gi|251816703|emb|CAZ52345.1| putative thioredoxin reductase [Streptococcus suis SC84]
 gi|251820486|emb|CAR47233.1| putative thioredoxin reductase [Streptococcus suis P1/7]
 gi|292559019|gb|ADE32020.1| thioredoxin reductase [Streptococcus suis GZ1]
 gi|319758820|gb|ADV70762.1| hypothetical protein SSUJS14_1702 [Streptococcus suis JS14]
 gi|329307578|gb|AEB81994.1| hypothetical protein SSUST3_1577 [Streptococcus suis ST3]
          Length = 305

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +VIG G AG  AA  A +     AL+
Sbjct: 2  YDTVVIGAGPAGMTAALYAGRSNLKVALL 30


>gi|159041758|ref|YP_001541010.1| geranylgeranyl reductase [Caldivirga maquilingensis IC-167]
 gi|157920593|gb|ABW02020.1| geranylgeranyl reductase [Caldivirga maquilingensis IC-167]
          Length = 362

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YD+I+IG G AG  AA VA++LG    +              P  GG
Sbjct: 2  YDLIIIGSGPAGNAAALVASRLGVRALI----IDKSKHPRVKPCGGG 44


>gi|115956707|ref|XP_001185270.1| PREDICTED: similar to putative CMF receptor CMFR1, partial
          [Strongylocentrotus purpuratus]
          Length = 530

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STI-GSMSCNPAI 50
           YDV ++G G AG   A   AK G    L+  K        G   C  A+
Sbjct: 6  HYDVAIVGAGPAGSTLAYYLAKSGRKVLLLEKKKFPRDKYCGDAVCKTAV 55


>gi|302556998|ref|ZP_07309340.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
 gi|302474616|gb|EFL37709.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
          Length = 534

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD +++GGGH G  AAA  A+ G S  ++  +    G  + +          L R    +
Sbjct: 22  YDAVIVGGGHNGLVAAAYLARAGRSVLVLE-RLDHTGGAAVSTRPFTGVDARLSRYSYLV 80

Query: 66  DGLMGRVADAAGIQFRVLNVKK----GPAVRGPR 95
             L G++ D  G+  R L  +      PA R  R
Sbjct: 81  SLLPGKIVDDLGLDVR-LRTRDISSYTPAERDGR 113


>gi|298717542|ref|YP_003730184.1| FAD-dependent monooxygenase [Pantoea vagans C9-1]
 gi|298361731|gb|ADI78512.1| FAD-dependent monooxygenase [Pantoea vagans C9-1]
          Length = 408

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 24/205 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-------------THKTSTIGSMSCNPAIGGL 53
           D  ++GGG AG     + A+ G    +I             T   ST+  M     +G L
Sbjct: 12  DCCIVGGGPAGLMLGYLFARAGLRVVVIEKHANFLHDFRGDTIHPSTLEIMH---QLGLL 68

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                +    A        A+ AG    + +  + P          +  +   M  +   
Sbjct: 69  ESFLTLPHQRAE----KLEAEIAGQSITMADFSRLPVQCRFIAFMPQWDFLNYMAEQSAR 124

Query: 114 QENLDVIQGEV-AGFNTEKNIISSIVMQDNS---MIRCSTVVLTTGTFLRGVIHIGKLKI 169
                ++Q         E   +S +     +    IRC  VV   G   R     G +  
Sbjct: 125 YPGFSLLQSTAFESLIEENGTVSGVTASRGNQQLHIRCKLVVGADGRHSRVRDAAGLIGQ 184

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTG 194
             G   D     L       +   G
Sbjct: 185 EFGAARDVIWFRLSKQPQDPELGMG 209


>gi|269218335|ref|ZP_06162189.1| putative monooxygenase, FAD-binding [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212194|gb|EEZ78534.1| putative monooxygenase, FAD-binding [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 421

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 31/172 (18%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVR--- 60
           D +V+G G AG   A   A  G    L+         +    C   +       LVR   
Sbjct: 9   DAVVVGAGPAGSSTAHYLAMAGLRVLLLEKSAFPRDKV----CGDGLTPRAVAELVRMGV 64

Query: 61  ---------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
                     + A+ G  GR  +    +   L    G A   PR + D  L   A +   
Sbjct: 65  DTSGWARNTGLRAVGG--GRTIELPWPETASL-PNFGLA--CPRAELDAALAAKAQESGA 119

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM----IRCSTVVLTTGTFLR 159
           + +EN+ V+       +     +  +  +         +   VV   G   R
Sbjct: 120 VLRENVTVVGPI---LHERSGRVIGVKAKSAEREPLAFKAPVVVDAGGVSAR 168


>gi|261350784|ref|ZP_05976201.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1
           [Methanobrevibacter smithii DSM 2374]
 gi|288860402|gb|EFC92700.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1
           [Methanobrevibacter smithii DSM 2374]
          Length = 268

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V VIGGG AG  AA   AK G    +I    S  G M
Sbjct: 139 EVAVIGGGIAGMNAALSLAKQGTKVTIIESSPSIGGHM 176


>gi|260575160|ref|ZP_05843161.1| sarcosine oxidase, alpha subunit family [Rhodobacter sp. SW2]
 gi|259022782|gb|EEW26077.1| sarcosine oxidase, alpha subunit family [Rhodobacter sp. SW2]
          Length = 1003

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           DV+V+GGG AG +AA VA   GA   L+  
Sbjct: 170 DVLVVGGGIAGLQAALVAGASGARVLLLEQ 199


>gi|229065452|ref|ZP_04200700.1| phytoene dehydrogenase enzyme [Bacillus cereus AH603]
 gi|228715770|gb|EEL67542.1| phytoene dehydrogenase enzyme [Bacillus cereus AH603]
          Length = 436

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIVGGGLAGLTASIYLAKSGRKVIVLE-KSSRFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFLTFN 70


>gi|222444678|ref|ZP_03607193.1| hypothetical protein METSMIALI_00291 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434243|gb|EEE41408.1| hypothetical protein METSMIALI_00291 [Methanobrevibacter smithii
           DSM 2375]
          Length = 768

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V VIGGG AG  AA   AK G    +I    S  G M
Sbjct: 139 EVAVIGGGIAGMNAALSLAKQGTKVTIIESSPSIGGHM 176


>gi|148642142|ref|YP_001272655.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551159|gb|ABQ86287.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 768

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +V VIGGG AG  AA   AK G    +I    S  G M
Sbjct: 139 EVAVIGGGIAGMNAALSLAKQGTKVTIIESSPSIGGHM 176


>gi|150397650|ref|YP_001328117.1| glucose-methanol-choline oxidoreductase [Sinorhizobium medicae
          WSM419]
 gi|150029165|gb|ABR61282.1| glucose-methanol-choline oxidoreductase [Sinorhizobium medicae
          WSM419]
          Length = 554

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAA-KLGASTALITHKTSTIGSMSCNPA 49
          SY+ IV+GGG AGC AA   A + GA   ++         +   PA
Sbjct: 2  SYEHIVVGGGTAGCLAAGKLAGEHGARVLVLEAGPDDRNPLIRMPA 47


>gi|322712718|gb|EFZ04291.1| putative pyridine nucleotide-disulfide oxidoreductase [Metarhizium
           anisopliae ARSEF 23]
          Length = 530

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
            S+DV+VIGGG  G  A   AA+LG   AL          +   P +GG  
Sbjct: 95  ESFDVVVIGGGIPGAAAVLTAAQLGQRVAL----------VHNRPYLGGNA 135


>gi|257140983|ref|ZP_05589245.1| choline dehydrogenase [Burkholderia thailandensis E264]
          Length = 550

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 106 AMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            +  ++ ++ENL +  G  V     + +    + +     I    V+L+ G++    I +
Sbjct: 251 YLTNDVRARENLQIRGGSLVDRVLFDNDRAIGVRLASGEEIHAGEVILSAGSYGSAAILL 310

Query: 165 GK-----LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                    + A  + +  +  +        F          AR D              
Sbjct: 311 RSGIGPGADLRALSIPEVANLPVGKRLKDHPF----YYNAYAARPDK-----------IG 355

Query: 220 DERLIPFSFMTDK---ITNRQIECGITRTNLETHR 251
           D+  +  +F+        N  ++  +T T+L  H 
Sbjct: 356 DQSPVIGAFLWTHSATAQNGDLDLHVTATHLFPHD 390


>gi|239833937|ref|ZP_04682265.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Ochrobactrum intermedium LMG 3301]
 gi|239822000|gb|EEQ93569.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Ochrobactrum intermedium LMG 3301]
          Length = 414

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---IGSMSCNPAIGGLGKGHLVREID 63
           D+++ G G AG  AA      G  T L+  +T       +    PAI       L+  + 
Sbjct: 12  DIVISGSGPAGMMAALALGAKGYRTVLLGPETDKGDRRTTALMMPAIR------LLEGLG 65

Query: 64  ALDGLMGRVADAAGIQFRVLNVK--KGPAVRGPRTQADRELYRLAMQREILSQ------- 114
              G+    A  A ++      +  + P V     + D   +   +   +L++       
Sbjct: 66  VWPGIEPEAAALASMRIVDATRRLVRSPVVTFRAGEIDEAAFGYNIPNAVLNEKLSEAVA 125

Query: 115 --ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              N+  I   V  +    + ++ + +     +    VV   G
Sbjct: 126 RNPNIQRINAPVIEYRHNGDHVT-VTLSGGDTLHTRLVVAADG 167


>gi|254463931|ref|ZP_05077342.1| gamma-glutamylputrescine oxidoreductase [Rhodobacterales bacterium
           Y4I]
 gi|206684839|gb|EDZ45321.1| gamma-glutamylputrescine oxidoreductase [Rhodobacterales bacterium
           Y4I]
          Length = 446

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+GGG+ G  AA   A+ G S  L+  +    G+   N    G G+      ++AL 
Sbjct: 50  DVCVVGGGYTGLSAALHLAEAGMSVVLLEAQRVGFGASGRNGGQLGSGQRMDQEGLEALM 109

Query: 67  G 67
           G
Sbjct: 110 G 110


>gi|254460516|ref|ZP_05073932.1| geranylgeranyl reductase [Rhodobacterales bacterium HTCC2083]
 gi|206677105|gb|EDZ41592.1| geranylgeranyl reductase [Rhodobacteraceae bacterium HTCC2083]
          Length = 392

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DV+VIGGG +G  AA   A+ G   A+I
Sbjct: 2  FDVVVIGGGPSGATAAEDLARSGRKVAMI 30


>gi|167617089|ref|ZP_02385720.1| choline dehydrogenase [Burkholderia thailandensis Bt4]
          Length = 550

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 106 AMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            +  ++ ++ENL +  G  V     + +    + +     I    V+L+ G++    I +
Sbjct: 251 YLTNDVRARENLQIRGGSLVDRVLFDNDRAIGVRLASGEEIHAGEVILSAGSYGSAAILL 310

Query: 165 GK-----LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                    + A  + +  +  +        F          AR D              
Sbjct: 311 RSGIGPGADLRALSIPEVANLPVGKRLKDHPF----YYNAYAARPDK-----------IG 355

Query: 220 DERLIPFSFMTDK---ITNRQIECGITRTNLETHR 251
           D+  +  +F+        N  ++  +T T+L  H 
Sbjct: 356 DQSPVIGAFLWTHSATAQNGDLDLHVTATHLFPHD 390


>gi|163737665|ref|ZP_02145082.1| Glutathione reductase [Phaeobacter gallaeciensis BS107]
 gi|161389191|gb|EDQ13543.1| Glutathione reductase [Phaeobacter gallaeciensis BS107]
          Length = 451

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++  YD+ VIGGG  G  AA VAA+ G   AL
Sbjct: 1  MSFDYDLFVIGGGSGGVRAARVAAQRGVKVAL 32


>gi|163740762|ref|ZP_02148155.1| glutathione-disulfide reductase [Phaeobacter gallaeciensis 2.10]
 gi|161385753|gb|EDQ10129.1| glutathione-disulfide reductase [Phaeobacter gallaeciensis 2.10]
          Length = 451

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++  YD+ VIGGG  G  AA VAA+ G   AL
Sbjct: 1  MSFDYDLFVIGGGSGGVRAARVAAQRGVKVAL 32


>gi|83717453|ref|YP_440349.1| choline dehydrogenase [Burkholderia thailandensis E264]
 gi|83651278|gb|ABC35342.1| choline dehydrogenase [Burkholderia thailandensis E264]
          Length = 588

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 106 AMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            +  ++ ++ENL +  G  V     + +    + +     I    V+L+ G++    I +
Sbjct: 289 YLTNDVRARENLQIRGGSLVDRVLFDNDRAIGVRLASGEEIHAGEVILSAGSYGSAAILL 348

Query: 165 GK-----LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA 219
                    + A  + +  +  +        F          AR D              
Sbjct: 349 RSGIGPGADLRALSIPEVANLPVGKRLKDHPF----YYNAYAARPDK-----------IG 393

Query: 220 DERLIPFSFMTDK---ITNRQIECGITRTNLETHR 251
           D+  +  +F+        N  ++  +T T+L  H 
Sbjct: 394 DQSPVIGAFLWTHSATAQNGDLDLHVTATHLFPHD 428


>gi|78063395|ref|YP_373303.1| FAD dependent oxidoreductase [Burkholderia sp. 383]
 gi|77971280|gb|ABB12659.1| FAD dependent oxidoreductase [Burkholderia sp. 383]
          Length = 304

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGK--GHL 58
           +   ++VIVIGG  AG  AA   A+      +I   +     +   +   G  GK    +
Sbjct: 1   MQDHHEVIVIGGSFAGLSAAMQLARARRRVLVIDAGQPRNRFAAHAHGFFGQDGKPPAQI 60

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKG----PAVRGPRTQADRELYRLAMQREILSQ 114
           V E  A       V   AG          G        G R  ADR +    ++ E+ + 
Sbjct: 61  VDEAAAQLAAYPTVQRIAGDVRTAERDADGRFHVTLADGSRASADRLILATGIRDELPAL 120

Query: 115 ENLDVIQG 122
             L    G
Sbjct: 121 PGLAERWG 128


>gi|39935928|ref|NP_948204.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris
          CGA009]
 gi|39649782|emb|CAE28304.1| dihydrolipoamide dehydrogenase, E3 Component of Pyruvate
          dehydrogenase multienzyme complex [Rhodopseudomonas
          palustris CGA009]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   S+DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MSETSFDVIIIGSGPGGYVAAIRAAQLGFKTAIV 34


>gi|94972239|ref|YP_594279.1| thioredoxin reductase [Deinococcus geothermalis DSM 11300]
 gi|94554290|gb|ABF44205.1| thioredoxin reductase [Deinococcus geothermalis DSM 11300]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+++GGG AG  AA    +   ST ++
Sbjct: 1  MKQNYDVVIVGGGPAGLTAAIYTGRASLSTLVL 33


>gi|67925014|ref|ZP_00518397.1| Geranylgeranyl reductase [Crocosphaera watsonii WH 8501]
 gi|67853132|gb|EAM48508.1| Geranylgeranyl reductase [Crocosphaera watsonii WH 8501]
          Length = 413

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 12  VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 61

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   + Y    +RE+L 
Sbjct: 62  LPPEIIDRRVRKMKMISPSNVEVDINLDRQ---DEYIGMCRREVLD 104


>gi|332884331|gb|EGK04599.1| dihydrolipoyl dehydrogenase [Dysgonomonas mossii DSM 22836]
          Length = 449

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +D+ +IGGG AG  AA +AA  G  T L   K
Sbjct: 2  EFDIAIIGGGPAGYNAAEIAASNGLKTVLFEKK 34


>gi|312133090|ref|YP_004000429.1| lpd1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311774085|gb|ADQ03573.1| Lpd1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   AL+                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|296453788|ref|YP_003660931.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183219|gb|ADH00101.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   AL+                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|242059987|ref|XP_002459139.1| hypothetical protein SORBIDRAFT_03g046550 [Sorghum bicolor]
 gi|241931114|gb|EES04259.1| hypothetical protein SORBIDRAFT_03g046550 [Sorghum bicolor]
          Length = 419

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DVIV+G G  G   A  AA  G+   L+
Sbjct: 16 FDVIVVGAGIMGSCTAHAAASRGSRVLLL 44


>gi|23465643|ref|NP_696246.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum NCC2705]
 gi|239622245|ref|ZP_04665276.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322690740|ref|YP_004220310.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326317|gb|AAN24882.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum NCC2705]
 gi|239514242|gb|EEQ54109.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455596|dbj|BAJ66218.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   AL+                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|46191106|ref|ZP_00120541.2| COG1249: Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Bifidobacterium longum DJO10A]
 gi|189439689|ref|YP_001954770.1| acetoin/pyruvate dehydrogenase complex E3 component
           [Bifidobacterium longum DJO10A]
 gi|317481804|ref|ZP_07940832.1| dihydrolipoyl dehydrogenase [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428124|gb|ACD98272.1| acetoin/pyruvate dehydrogenase complex E3 component
           [Bifidobacterium longum DJO10A]
 gi|291517177|emb|CBK70793.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           longum F8]
 gi|316916741|gb|EFV38135.1| dihydrolipoyl dehydrogenase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   AL+                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|328913548|gb|AEB65144.1| thioredoxin reductase [Bacillus amyloliquefaciens LL3]
          Length = 316

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 36


>gi|323351609|ref|ZP_08087263.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis VMC66]
 gi|322122095|gb|EFX93821.1| dihydrolipoyl dehydrogenase [Streptococcus sanguinis VMC66]
          Length = 461

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGH---LVR 60
           YDV++IG G  G  AA  AA+LG   A++  K+   T  ++ C P+   L  GH    + 
Sbjct: 19  YDVLIIGAGPGGYVAAEEAARLGKKVAVVEKKSIGGTCLNVGCIPSKAYLQHGHWLLTME 78

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E           +    I F  L  +K   +   ++        L           ++ I
Sbjct: 79  EARRYG----IESKLERIDFEKLVDRKNQVIASLQSGIHASFKSL----------GIEYI 124

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           +G+          +      +   I    V+L TG++
Sbjct: 125 EGQAKFVKDRTFSV------NGKEISGKDVILATGSY 155


>gi|319953138|ref|YP_004164405.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cellulophaga algicola DSM 14237]
 gi|319421798|gb|ADV48907.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cellulophaga algicola DSM 14237]
          Length = 671

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKTFC 64


>gi|313609491|gb|EFR85055.1| dihydrolipoyl dehydrogenase [Listeria monocytogenes FSL F2-208]
          Length = 186

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|308175217|ref|YP_003921922.1| thioredoxin reductase [Bacillus amyloliquefaciens DSM 7]
 gi|307608081|emb|CBI44452.1| thioredoxin reductase [Bacillus amyloliquefaciens DSM 7]
          Length = 317

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 36


>gi|240168727|ref|ZP_04747386.1| monooxygenase FAD-binding protein [Mycobacterium kansasii ATCC
          12478]
          Length = 388

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIGG  AG   A + A+ G    ++
Sbjct: 1  MDNHYDVIVIGGRCAGASTAMLLARAGLRVLVV 33


>gi|229178783|ref|ZP_04306145.1| phytoene dehydrogenase enzyme [Bacillus cereus 172560W]
 gi|228604694|gb|EEK62153.1| phytoene dehydrogenase enzyme [Bacillus cereus 172560W]
          Length = 436

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV +IGGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIIGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|209514980|ref|ZP_03263849.1| FAD dependent oxidoreductase [Burkholderia sp. H160]
 gi|209504606|gb|EEA04593.1| FAD dependent oxidoreductase [Burkholderia sp. H160]
          Length = 626

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +++SYD++ +G GH G  AAA  AK G    ++  K                G G   RE
Sbjct: 1  MSQSYDIVAMGAGHNGLVAAAYLAKAGKKVLVLERK-------------AWPGGGVSTRE 47

Query: 62 IDALD 66
          ++   
Sbjct: 48 LNTPG 52


>gi|206971692|ref|ZP_03232642.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218234828|ref|YP_002367126.1| hypothetical protein BCB4264_A2410 [Bacillus cereus B4264]
 gi|229150635|ref|ZP_04278849.1| phytoene dehydrogenase enzyme [Bacillus cereus m1550]
 gi|229190521|ref|ZP_04317518.1| phytoene dehydrogenase enzyme [Bacillus cereus ATCC 10876]
 gi|206733677|gb|EDZ50849.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218162785|gb|ACK62777.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|228592866|gb|EEK50688.1| phytoene dehydrogenase enzyme [Bacillus cereus ATCC 10876]
 gi|228632722|gb|EEK89337.1| phytoene dehydrogenase enzyme [Bacillus cereus m1550]
          Length = 436

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV +IGGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIIGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|148239653|ref|YP_001225040.1| geranylgeranyl hydrogenase ChlP [Synechococcus sp. WH 7803]
 gi|147848192|emb|CAK23743.1| Geranylgeranyl hydrogenase ChlP [Synechococcus sp. WH 7803]
          Length = 457

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA + AK G ST L   K     +  C    GG     +V E D  + 
Sbjct: 4   VAVVGGGPSGSCAAEILAKAGISTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68  LMGRVADAAGIQFRVLNVK-KGPAVRGPRTQADRELYRLAMQREILS 113
               + D      ++++   K   ++      D   Y    +RE+  
Sbjct: 58  ----IIDRKVRNMKMISPSNKEVDIKLDPLGYDDNAYIGMCRREVFD 100


>gi|124485118|ref|YP_001029734.1| hypothetical protein Mlab_0291 [Methanocorpusculum labreanum Z]
 gi|124362659|gb|ABN06467.1| HI0933 family protein [Methanocorpusculum labreanum Z]
          Length = 408

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 1  MINRSYDVIVIGGGHAG--CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          M    YDVIV+G G AG  C A    AK              +        + G G+ +L
Sbjct: 1  MSMHEYDVIVVGTGPAGLFCAAHLAPAK--------VLVLEKMKLPGRKLLLAGSGQCNL 52

Query: 59 VREIDA 64
              D 
Sbjct: 53 THAGDV 58


>gi|16080532|ref|NP_391359.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221311429|ref|ZP_03593276.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221315756|ref|ZP_03597561.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          NCIB 3610]
 gi|221320671|ref|ZP_03601965.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221324956|ref|ZP_03606250.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          SMY]
 gi|321313030|ref|YP_004205317.1| thioredoxin reductase [Bacillus subtilis BSn5]
 gi|3123300|sp|P80880|TRXB_BACSU RecName: Full=Thioredoxin reductase; Short=TRXR; AltName:
          Full=General stress protein 35; Short=GSP35
 gi|1945648|emb|CAB08055.1| hypothetical protein [Bacillus subtilis]
 gi|2635992|emb|CAB15484.1| thioredoxin reductase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|320019304|gb|ADV94290.1| thioredoxin reductase [Bacillus subtilis BSn5]
          Length = 316

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|85704108|ref|ZP_01035211.1| hypothetical protein ROS217_13956 [Roseovarius sp. 217]
 gi|85671428|gb|EAQ26286.1| hypothetical protein ROS217_13956 [Roseovarius sp. 217]
          Length = 390

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDA 64
          D +VIG G AG  AA   A+ G    L   K     S+     + G    +L +  E DA
Sbjct: 3  DALVIGAGPAGLMAAREMARAGLRVTLAEAKP----SVGRKFLMAGKSGLNLTKAEEFDA 58

Query: 65 LDGLMGRVAD 74
               G  AD
Sbjct: 59 FMAAYGPRAD 68


>gi|90424578|ref|YP_532948.1| HI0933-like protein [Rhodopseudomonas palustris BisB18]
 gi|90106592|gb|ABD88629.1| HI0933-like protein [Rhodopseudomonas palustris BisB18]
          Length = 409

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M + S  V +IG G AG  AA V A+ GA   +       + S      + G G  +L  
Sbjct: 1  MTDNSNSVAIIGAGPAGLMAAEVIAQGGARVTVY----DGMASAGRKFLLAGRGGLNLTH 56

Query: 61 E 61
           
Sbjct: 57 S 57


>gi|67609537|ref|XP_667035.1| (R)-mandelonitrile lyase ((r)-oxynitrilase) [Cryptosporidium
          hominis TU502]
 gi|54658121|gb|EAL36802.1| (R)-mandelonitrile lyase ((r)-oxynitrilase) [Cryptosporidium
          hominis]
          Length = 704

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  YDVI+IG G +GC  A V AK G    L+
Sbjct: 36 DEEYDVIIIGAGVSGCSMANVYAKNGKKVLLL 67


>gi|330999582|ref|ZP_08323293.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
 gi|329574435|gb|EGG56005.1| flavocytochrome c [Parasutterella excrementihominis YIT 11859]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           ++  DVIVIG G AG  AA  A + GAS  L       + +   N AI G  
Sbjct: 36 FDKVADVIVIGSGFAGLAAALEAKEKGASVML----LEKMPAYGGNSAINGGA 84


>gi|330835372|ref|YP_004410100.1| FAD dependent oxidoreductase [Metallosphaera cuprina Ar-4]
 gi|329567511|gb|AEB95616.1| FAD dependent oxidoreductase [Metallosphaera cuprina Ar-4]
          Length = 516

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV VIGGGH G  AAA  A  G   A+ 
Sbjct: 2  YDVTVIGGGHNGLVAAAYLAMKGLKVAVF 30


>gi|328555189|gb|AEB25681.1| thioredoxin reductase [Bacillus amyloliquefaciens TA208]
          Length = 315

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|322795837|gb|EFZ18516.1| hypothetical protein SINV_14917 [Solenopsis invicta]
          Length = 878

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IGGG AGC A    AK G +  L+
Sbjct: 31 DVVIIGGGSAGCNALYQLAKRGVNAVLL 58


>gi|317497350|ref|ZP_07955673.1| HI0933-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895419|gb|EFV17578.1| HI0933-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 305

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           YDVI++G G +G  AA  AA       L       +  +       G G+ +L
Sbjct: 2  KYDVIIVGAGASGMMAAITAASHHKKVLL----LERMDKLGKKILATGNGRCNL 51


>gi|303257052|ref|ZP_07343066.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
 gi|302860543|gb|EFL83620.1| flavoCytochrome c flavin subunit [Burkholderiales bacterium
          1_1_47]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           ++  DVIVIG G AG  AA  A + GAS  L       + +   N AI G  
Sbjct: 36 FDKVADVIVIGSGFAGLAAALEAKEKGASVML----LEKMPAYGGNSAINGGA 84


>gi|302525263|ref|ZP_07277605.1| oxidoreductase [Streptomyces sp. AA4]
 gi|302434158|gb|EFL05974.1| oxidoreductase [Streptomyces sp. AA4]
          Length = 515

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YD +++GGGH G  AAA  A+ G S  ++  +    G+     A  G+
Sbjct: 23 DYDAVIVGGGHNGLVAAAYLARAGRSVLVLERRAEIGGAAVSFRAFPGV 71


>gi|302698339|ref|XP_003038848.1| hypothetical protein SCHCODRAFT_46918 [Schizophyllum commune
          H4-8]
 gi|300112545|gb|EFJ03946.1| hypothetical protein SCHCODRAFT_46918 [Schizophyllum commune
          H4-8]
          Length = 585

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITH 36
          V+VIGGG AG  AA+  A+ G    ++  
Sbjct: 43 VLVIGGGPAGSYAASALAREGVEVTVLEQ 71


>gi|296535661|ref|ZP_06897837.1| FAD dependent oxidoreductase [Roseomonas cervicalis ATCC 49957]
 gi|296264012|gb|EFH10461.1| FAD dependent oxidoreductase [Roseomonas cervicalis ATCC 49957]
          Length = 433

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL------VR 60
           DV VIGGG  G  AA   A+ GA T L+       G+   N          L       R
Sbjct: 31  DVAVIGGGFTGLSAALHLAEGGADTLLLEAGPIGYGASGRNNGQVIPNLSRLDPDDIAAR 90

Query: 61  EIDALDG------LMGRVADAAGIQFRVLNVKKGPAVRG 93
               L G      L+G + D+A + F ++      A   
Sbjct: 91  VTPELGGRDKGEQLVGLIRDSASLVFDLIRRHGIEAEAV 129


>gi|291486027|dbj|BAI87102.1| thioredoxin reductase [Bacillus subtilis subsp. natto BEST195]
          Length = 309

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|326317757|ref|YP_004235429.1| FAD dependent oxidoreductase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374593|gb|ADX46862.1| FAD dependent oxidoreductase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 429

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 17/173 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-L 65
           DV ++G G  G  AA   A+ GAS  ++          +  P   G   GH+   +    
Sbjct: 26  DVAIVGAGFTGLSAAHALARQGASVVVLE------AGETVAPEASGRNGGHVNNGLAVDY 79

Query: 66  DGLMGRV-ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-NLDVIQGE 123
             +  RV  + A   +   +       R  R +A    +    + ++ ++  +LD ++  
Sbjct: 80  ADVAARVGVEQARAWYHAYDAAVDTVARLVREEAIDCDFLRHGKLKLATRPQHLDALRRS 139

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT--FLRGVIHIGKLKIPAGRM 174
                 +      +   D  ++  + V     +  F+ G+++    ++  GR 
Sbjct: 140 AERLVAD-----GVDT-DVEVLDAARVAAEVQSDRFVGGLLYKRSGQMHMGRF 186


>gi|302544573|ref|ZP_07296915.1| monooxygenase, FAD-binding [Streptomyces hygroscopicus ATCC 53653]
 gi|302462191|gb|EFL25284.1| monooxygenase, FAD-binding [Streptomyces himastatinicus ATCC 53653]
          Length = 505

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 86/306 (28%), Gaps = 32/306 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M     DV+++G G  G   A   A  G  T +       +   S N    G        
Sbjct: 1   MNETETDVVIVGAGPTGLTLAYELALAGVETLV----LEKL--TSRNRQTKGGAIQARTA 54

Query: 61  EIDALDGLMGRVADAA------GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E+    GL+  +   A      G  F +L V         R  +   L +  ++  +  +
Sbjct: 55  ELLESRGLLEPMRRRAIPGPPVGANFALLPVPLDCGPWDTRYPSPVMLPQWEIEEVLEER 114

Query: 115 E---NLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                  V +G  V     + + ++         +R   +V   G    GV     +  P
Sbjct: 115 ATALGARVRRGAAVTAVEPDDDGVTVTTTDGGPPVRARYLVACDGGR-SGVRKALGVPFP 173

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMT 230
                      L +  +         + G  + L  +   +        D+R      +T
Sbjct: 174 GRPGTYLAV--LADIRLSAASALVPRERGQISTLTRQANGYWSMLIPLGDDRYR----LT 227

Query: 231 DKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                R+    +TR        I   ++  A+Y  +    G        D   RF +   
Sbjct: 228 YGAYGREDPTDLTRDTPVGEDEIAAALR--AVYGEETVLGG-------VDNASRFSDATR 278

Query: 291 HQIFLE 296
                 
Sbjct: 279 QVERYR 284


>gi|237731293|ref|ZP_04561774.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906832|gb|EEH92750.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 429

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  +D IV+G G AG  A  V A+ G    +         S       GG    H + 
Sbjct: 1  MSDEKFDAIVVGAGVAGTVAGYVMAQAGLDVLV----IERGNSAGSKNMTGGRLYAHSLE 56

Query: 61 EI 62
           I
Sbjct: 57 RI 58


>gi|224824988|ref|ZP_03698094.1| HI0933 family protein [Lutiella nitroferrum 2002]
 gi|224602659|gb|EEG08836.1| HI0933 family protein [Lutiella nitroferrum 2002]
          Length = 390

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +DVI+IG G AG   AA A + G S  L+ H
Sbjct: 4  FDVIIIGAGAAGLMCAATAGQRGRSVLLLDH 34


>gi|167767289|ref|ZP_02439342.1| hypothetical protein CLOSS21_01808 [Clostridium sp. SS2/1]
 gi|167711264|gb|EDS21843.1| hypothetical protein CLOSS21_01808 [Clostridium sp. SS2/1]
 gi|291559401|emb|CBL38201.1| conserved hypothetical protein TIGR00275 [butyrate-producing
          bacterium SSC/2]
          Length = 405

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           YDVI++G G +G  AA  AA       L       +  +       G G+ +L
Sbjct: 2  KYDVIIVGAGASGMMAAITAASHHKKVLL----LERMDKLGKKILATGNGRCNL 51


>gi|332797882|ref|YP_004459382.1| FAD dependent oxidoreductase [Acidianus hospitalis W1]
 gi|332695617|gb|AEE95084.1| FAD dependent oxidoreductase [Acidianus hospitalis W1]
          Length = 516

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI++GGGH G   A   A+ G   A+ 
Sbjct: 2  YDVIIVGGGHNGLVTANYLAREGLKVAVF 30


>gi|330836247|ref|YP_004410888.1| FAD dependent oxidoreductase [Spirochaeta coccoides DSM 17374]
 gi|329748150|gb|AEC01506.1| FAD dependent oxidoreductase [Spirochaeta coccoides DSM 17374]
          Length = 485

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          M ++ +D IVIG G  G   AA+ A  G    L+   +S  G M
Sbjct: 1  MSSKRFDAIVIGAGPGGSTIAALLANSGKRVLLVDKNSSAGGKM 44


>gi|323442539|gb|EGB00167.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus O46]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|323439297|gb|EGA97022.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus O11]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|303327123|ref|ZP_07357565.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfovibrio sp. 3_1_syn3]
 gi|302863111|gb|EFL86043.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Desulfovibrio sp. 3_1_syn3]
          Length = 435

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
          ++R+ DV+V G G AG  AA  AA+ G S  L+T     +GS+     C   +G  G   
Sbjct: 1  MSRTIDVLVAGSGLAGLMAALTAAQDGRSVRLVT---DGMGSLAISGGCVDLLGYAGGRR 57

Query: 58 LVREIDALDGL 68
          L    D  +G+
Sbjct: 58 L---DDPWNGM 65


>gi|302332118|gb|ADL22311.1| alkyl hydroperoxide reductase, large subunit [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|283469684|emb|CAQ48895.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus ST398]
 gi|298693717|gb|ADI96939.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|258455935|ref|ZP_05703890.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A5937]
 gi|257862147|gb|EEV84920.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A5937]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|258424567|ref|ZP_05687444.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9635]
 gi|282915723|ref|ZP_06323493.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|283768107|ref|ZP_06341022.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus H19]
 gi|257845162|gb|EEV69199.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9635]
 gi|282320352|gb|EFB50692.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|283461986|gb|EFC09070.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus H19]
 gi|329732384|gb|EGG68734.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|258413500|ref|ZP_05681775.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A9763]
 gi|257839747|gb|EEV64216.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A9763]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|257424523|ref|ZP_05600952.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427192|ref|ZP_05603594.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429828|ref|ZP_05606215.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432531|ref|ZP_05608894.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282922865|ref|ZP_06330555.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|293498288|ref|ZP_06666142.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509228|ref|ZP_06667946.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550492|ref|ZP_06673164.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus M1015]
 gi|257273541|gb|EEV05643.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276823|gb|EEV08274.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257280309|gb|EEV10896.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257283410|gb|EEV13542.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus E1410]
 gi|282315086|gb|EFB45472.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|290919539|gb|EFD96615.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291097219|gb|EFE27477.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467980|gb|EFF10488.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus M809]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|255026790|ref|ZP_05298776.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J2-003]
          Length = 453

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|253730745|ref|ZP_04864910.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725589|gb|EES94318.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|169832072|ref|YP_001718054.1| fumarate reductase flavoprotein subunit [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638916|gb|ACA60422.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 595

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 63/224 (28%), Gaps = 25/224 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLVRE 61
           DV+V+G G AG   A  AA  G    +++        ST+       A+G     H    
Sbjct: 10  DVLVLGAGLAGERTAIEAAARGLEVVILSLVPPRRSHSTVAQGGLQAALGNSVMSH-GDS 68

Query: 62  IDALDGLMGRVADAAGIQFRV-LNVKKGPAV--RGPRTQADRELYRLAMQREILSQENLD 118
            D       R AD    Q  V L V   PA   +  R            +R      +L 
Sbjct: 69  PDIHFADTVRGADWGCDQHVVRLFVNTAPAAVRQMARWGVPWSRITAGERRL----PDLS 124

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV-------IHIGKLKIPA 171
           V++   AG             +  +              L G+       +H     I  
Sbjct: 125 VVEEPEAGAGLINARKFGGTTKWRTCYAADGTGHALQYALDGMVLSMGITVHDRTEAIAL 184

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLK-----TGTPARLDGKTII 210
              G     ++       DF     K     TG   RL   +  
Sbjct: 185 IHDGKKCLGAVARCLRTGDFRAYLAKATVIATGGCGRLYSLSTN 228


>gi|168178686|ref|ZP_02613350.1| thioredoxin-disulfide reductase [Clostridium botulinum NCTC 2916]
 gi|226948526|ref|YP_002803617.1| thioredoxin-disulfide reductase [Clostridium botulinum A2 str.
          Kyoto]
 gi|182671339|gb|EDT83313.1| thioredoxin-disulfide reductase [Clostridium botulinum NCTC 2916]
 gi|226841823|gb|ACO84489.1| thioredoxin-disulfide reductase [Clostridium botulinum A2 str.
          Kyoto]
          Length = 313

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YD+I+IG G AG  A   AA+    T ++    +  G +     +           
Sbjct: 1  MDNVYDLIIIGSGPAGLSAGLYAARARLKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    D  G + +  NVK+
Sbjct: 60 GASLVARMEEQVDEFGAERKKDNVKE 85


>gi|114329081|ref|YP_746238.1| dehydrogenase-like protein [Granulibacter bethesdensis CGDNIH1]
 gi|114317255|gb|ABI63315.1| dehydrogenases (flavoproteins) [Granulibacter bethesdensis
          CGDNIH1]
          Length = 449

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++G G AGC AA + A+ G    L+
Sbjct: 22 DVLIVGAGPAGCTAAYLLAEKGRDVVLL 49


>gi|110667690|ref|YP_657501.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Haloquadratum walsbyi DSM 16790]
 gi|109625437|emb|CAJ51863.1| glycerol-3-phosphate dehydrogenase chain B [Haloquadratum walsbyi
          DSM 16790]
          Length = 435

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          DV+VIGGG AG  +A  AA+      L+T+K ST+   S
Sbjct: 6  DVLVIGGGLAGLTSALAAAQADIDVRLVTYKQSTLQQAS 44


>gi|87161642|ref|YP_493093.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87127616|gb|ABD22130.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|82750091|ref|YP_415832.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           RF122]
 gi|82655622|emb|CAI80018.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           RF122]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|49485260|ref|YP_042481.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|81649999|sp|Q6GC92|AHPF_STAAS RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|49243703|emb|CAG42128.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MSSA476]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|49482630|ref|YP_039854.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282902987|ref|ZP_06310880.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|282907383|ref|ZP_06315231.1| alkyl hydroperoxide reductase F subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282907727|ref|ZP_06315569.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282912612|ref|ZP_06320408.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282918186|ref|ZP_06325927.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|283959839|ref|ZP_06377280.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295426935|ref|ZP_06819574.1| alkyl hydroperoxide reductase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297588851|ref|ZP_06947492.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus MN8]
 gi|81651785|sp|Q6GJR8|AHPF_STAAR RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|49240759|emb|CAG39421.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282317883|gb|EFB48251.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|282324308|gb|EFB54624.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328632|gb|EFB58903.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330282|gb|EFB59803.1| alkyl hydroperoxide reductase F subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282597446|gb|EFC02405.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|283789431|gb|EFC28258.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295129387|gb|EFG59014.1| alkyl hydroperoxide reductase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577362|gb|EFH96075.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus MN8]
 gi|312436506|gb|ADQ75577.1| alkyl hydroperoxide reductase [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194861|gb|EFU25250.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|57652638|ref|YP_185341.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus COL]
 gi|88194162|ref|YP_498953.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151220583|ref|YP_001331405.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161508652|ref|YP_001574311.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221141357|ref|ZP_03565850.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|258453005|ref|ZP_05700998.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A5948]
 gi|262048940|ref|ZP_06021820.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus D30]
 gi|262052564|ref|ZP_06024760.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           930918-3]
 gi|282926474|ref|ZP_06334105.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9765]
 gi|294850029|ref|ZP_06790767.1| alkyl hydroperoxide reductase [Staphylococcus aureus A9754]
 gi|304380387|ref|ZP_07363067.1| alkyl hydroperoxide reductase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|3913011|sp|O05204|AHPF_STAA8 RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|81695255|sp|Q5HIR6|AHPF_STAAC RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|1916317|gb|AAB51152.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           RN4220]
 gi|57286824|gb|AAW38918.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus COL]
 gi|87201720|gb|ABD29530.1| alkyl hydroperoxide reductase, subunit F, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150373383|dbj|BAF66643.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160367461|gb|ABX28432.1| peroxiredoxin subunit F [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257859215|gb|EEV82070.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A5948]
 gi|259159545|gb|EEW44593.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           930918-3]
 gi|259163012|gb|EEW47574.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus D30]
 gi|269939958|emb|CBI48331.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282592194|gb|EFB97214.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9765]
 gi|294823163|gb|EFG39594.1| alkyl hydroperoxide reductase [Staphylococcus aureus A9754]
 gi|302750272|gb|ADL64449.1| alkyl hydroperoxide reductase, large subunit [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304341062|gb|EFM06982.1| alkyl hydroperoxide reductase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198064|gb|EFU28396.1| peroxiredoxin subunit F [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139310|gb|EFW31189.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142860|gb|EFW34656.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313097|gb|AEB87510.1| Alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329724297|gb|EGG60810.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|88855171|ref|ZP_01129836.1| hypothetical protein A20C1_04796 [marine actinobacterium
          PHSC20C1]
 gi|88815699|gb|EAR25556.1| hypothetical protein A20C1_04796 [marine actinobacterium
          PHSC20C1]
          Length = 442

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVIV+G G +G  AA + A+ G    ++
Sbjct: 2  EHFDVIVVGAGVSGLTAARLLARAGRRVVVL 32


>gi|15923370|ref|NP_370904.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926081|ref|NP_373614.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus N315]
 gi|21282085|ref|NP_645173.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MW2]
 gi|148266866|ref|YP_001245809.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392912|ref|YP_001315587.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156978708|ref|YP_001440967.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253316518|ref|ZP_04839731.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253735125|ref|ZP_04869290.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005176|ref|ZP_05143777.2| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257794214|ref|ZP_05643193.1| alkyl hydroperoxide reductase [Staphylococcus aureus A9781]
 gi|258421376|ref|ZP_05684303.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9719]
 gi|258436924|ref|ZP_05689264.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A9299]
 gi|258444359|ref|ZP_05692693.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A8115]
 gi|258444897|ref|ZP_05693218.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A6300]
 gi|258448102|ref|ZP_05696231.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A6224]
 gi|269202027|ref|YP_003281296.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893541|ref|ZP_06301774.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A8117]
 gi|282927435|ref|ZP_06335053.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A10102]
 gi|295405653|ref|ZP_06815463.1| alkyl hydroperoxide reductase [Staphylococcus aureus A8819]
 gi|296276093|ref|ZP_06858600.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297209105|ref|ZP_06925504.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245560|ref|ZP_06929428.1| alkyl hydroperoxide reductase [Staphylococcus aureus A8796]
 gi|300911106|ref|ZP_07128555.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus TCH70]
 gi|54036707|sp|P66013|AHPF_STAAW RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|54036712|sp|P99118|AHPF_STAAN RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|54040712|sp|P66012|AHPF_STAAM RecName: Full=Alkyl hydroperoxide reductase subunit F
 gi|13700294|dbj|BAB41592.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246148|dbj|BAB56542.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203521|dbj|BAB94221.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus MW2]
 gi|147739935|gb|ABQ48233.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945364|gb|ABR51300.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156720843|dbj|BAF77260.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253726925|gb|EES95654.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788186|gb|EEV26526.1| alkyl hydroperoxide reductase [Staphylococcus aureus A9781]
 gi|257842800|gb|EEV67222.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A9719]
 gi|257848715|gb|EEV72702.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A9299]
 gi|257850618|gb|EEV74566.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A8115]
 gi|257856215|gb|EEV79129.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A6300]
 gi|257858617|gb|EEV81491.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           A6224]
 gi|262074317|gb|ACY10290.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590759|gb|EFB95835.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A10102]
 gi|282764227|gb|EFC04354.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           A8117]
 gi|285816103|gb|ADC36590.1| Alkyl hydroperoxide reductase protein F [Staphylococcus aureus
           04-02981]
 gi|294969728|gb|EFG45747.1| alkyl hydroperoxide reductase [Staphylococcus aureus A8819]
 gi|296886038|gb|EFH24972.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177546|gb|EFH36797.1| alkyl hydroperoxide reductase [Staphylococcus aureus A8796]
 gi|300887285|gb|EFK82481.1| NADH dehydrogenase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312828901|emb|CBX33743.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315130030|gb|EFT86019.1| alkyl hydroperoxide reductase subunit F [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329725786|gb|EGG62265.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 507

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      IG         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|332188545|ref|ZP_08390265.1| succinate dehydrogenase, flavoprotein subunit [Sphingomonas sp.
           S17]
 gi|332011450|gb|EGI53535.1| succinate dehydrogenase, flavoprotein subunit [Sphingomonas sp.
           S17]
          Length = 602

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 72/222 (32%), Gaps = 53/222 (23%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-----------------HKTSTIGS 43
           +I+ +YD +V+G G +G  A    A+ G  TA IT                      +G 
Sbjct: 8   IIDHTYDAVVVGAGGSGLRATMGIAEAGLKTACITKVFPTRSHTVAAQGGIAASLGNMGP 67

Query: 44  MSCNPAIGGLGKGH-----------LVREIDALD------GLMGRVADAAGIQFRVL--- 83
                 +    KG            L RE  A        G+     +   I  R     
Sbjct: 68  DHWTWHMYDTVKGSDWLGDQDAIEYLCREAPAAVYELEHAGVPFSRTEEGKIYQRPFGGM 127

Query: 84  --NVKKGPAVRGPRTQADRELYRLAMQREILSQENL-----DVIQGEVAGFN-TEKNIIS 135
             N+ +GP  +     ADR  +  AM   +  Q++L       I+         E+    
Sbjct: 128 MQNMGEGPPAQRTCAAADRTGH--AMLHAL-YQQSLKYDADFFIEYFALDLIMDEQGNCR 184

Query: 136 SIV---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            ++   M+D S+   R   VVL TG + R            G
Sbjct: 185 GVIALCMEDGSIHRFRAHNVVLATGGYGRCYFSATSAHTCTG 226


>gi|331697462|ref|YP_004333701.1| squalene-associated FAD-dependent desaturase [Pseudonocardia
          dioxanivorans CB1190]
 gi|326952151|gb|AEA25848.1| squalene-associated FAD-dependent desaturase [Pseudonocardia
          dioxanivorans CB1190]
          Length = 477

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V V+GGG AG  AA   A  GA   L+  +            +GG+       E+D   G
Sbjct: 5  VAVVGGGLAGITAALRCADAGARVTLLESRA----------RLGGVAGSFRRGELDVDTG 54

Query: 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
              +         +L+     A  G + + D
Sbjct: 55 QHVVLR-CCTSYLALLDRLGVTADVGLQDRLD 85


>gi|307153950|ref|YP_003889334.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
 gi|306984178|gb|ADN16059.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
          Length = 409

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + +DV+++G G AG   A + AKLG S  L+   
Sbjct: 2  QYFDVVIVGAGPAGGHCARLLAKLGYSVLLVEQH 35


>gi|296282619|ref|ZP_06860617.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          N  YDV+VIG G  G  AA  AA+LG  TA 
Sbjct: 5  NYDYDVLVIGAGPGGYVAAIRAAQLGLKTAC 35


>gi|242242787|ref|ZP_04797232.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis W23144]
 gi|242233923|gb|EES36235.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis W23144]
 gi|319400855|gb|EFV89074.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis FRI909]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++            G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV 60

Query: 56 GHLVREIDALD 66
           H ++      
Sbjct: 61 NHTIKNAHTFG 71


>gi|228993248|ref|ZP_04153164.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          pseudomycoides DSM 12442]
 gi|228999292|ref|ZP_04158872.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          Rock3-17]
 gi|229006847|ref|ZP_04164480.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          Rock1-4]
 gi|228754469|gb|EEM03881.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          Rock1-4]
 gi|228760489|gb|EEM09455.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          Rock3-17]
 gi|228766316|gb|EEM14959.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          pseudomycoides DSM 12442]
          Length = 597

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GMNGAVNTKGEGD 59


>gi|255533039|ref|YP_003093411.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Pedobacter heparinus DSM 2366]
 gi|255346023|gb|ACU05349.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Pedobacter heparinus DSM 2366]
          Length = 300

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI +++DVI+IGG +AG  AA    +      +I
Sbjct: 1  MIIKNFDVIIIGGSYAGLSAALSLGRAIRKVLVI 34


>gi|218512436|ref|ZP_03509276.1| soluble pyridine nucleotide transhydrogenase [Rhizobium etli
          8C-3]
          Length = 99

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 3  QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|148379243|ref|YP_001253784.1| thioredoxin-disulfide reductase [Clostridium botulinum A str.
          ATCC 3502]
 gi|153932614|ref|YP_001383615.1| thioredoxin-disulfide reductase [Clostridium botulinum A str.
          ATCC 19397]
 gi|153936173|ref|YP_001387164.1| thioredoxin-disulfide reductase [Clostridium botulinum A str.
          Hall]
 gi|148288727|emb|CAL82810.1| thioredoxin reductase [Clostridium botulinum A str. ATCC 3502]
 gi|152928658|gb|ABS34158.1| thioredoxin-disulfide reductase [Clostridium botulinum A str.
          ATCC 19397]
 gi|152932087|gb|ABS37586.1| thioredoxin-disulfide reductase [Clostridium botulinum A str.
          Hall]
          Length = 313

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YD+I+IG G AG  A   AA+    T ++    +  G +     +           
Sbjct: 1  MDNVYDLIIIGSGPAGLSAGLYAARARLKTLILERNKAG-GQIVITDEVANYPGSIRDAT 59

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            +L   M    D  G + +  NVK+
Sbjct: 60 GASLVARMEEQVDEFGAERKKDNVKE 85


>gi|159037639|ref|YP_001536892.1| tryptophan halogenase [Salinispora arenicola CNS-205]
 gi|157916474|gb|ABV97901.1| tryptophan halogenase [Salinispora arenicola CNS-205]
          Length = 413

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGG AG   A + A  G    L+               +G      +V  + A
Sbjct: 7   EYDVIVVGGGPAGACTAGLLALEGHRILLLE--REKFPRYH----VGESLITGVVPTLTA 60

Query: 65  LDGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQENLD- 118
           L  L  M  +         +L  +        R +     R  Y   ++R       LD 
Sbjct: 61  LGLLDRMAELRFQVKYGGSLLWGENQTEPWSFRFREIRGGRYEYAWQVRRAEFDAMLLDR 120

Query: 119 -------VIQG-EVAGFNTEKNIISSIV 138
                  V++G  V    T+ + ++ + 
Sbjct: 121 ARELGVHVVEGATVRDALTDGDRLAGVR 148


>gi|91785359|ref|YP_560565.1| putative transmembrane protein, NAD(FAD)-binding [Burkholderia
          xenovorans LB400]
 gi|91689313|gb|ABE32513.1| Putative transmembrane protein, NAD(FAD)-binding protein
          [Burkholderia xenovorans LB400]
          Length = 430

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 2  INRSYD---VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++ S+D   V VIGGG AG  AA   A  G    +       + S+     + G G  ++
Sbjct: 1  MSSSFDSARVAVIGGGPAGLMAAEALASQGVQVDVY----DAMPSVGRKFLMAGKGGMNI 56

Query: 59 VRE 61
             
Sbjct: 57 THS 59


>gi|57866999|ref|YP_188656.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus epidermidis RP62A]
 gi|293366525|ref|ZP_06613202.1| 2-oxoisovalerate dehydrogenase [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|57637657|gb|AAW54445.1| 2-oxoisovalerate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Staphylococcus epidermidis RP62A]
 gi|291319294|gb|EFE59663.1| 2-oxoisovalerate dehydrogenase [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329735234|gb|EGG71526.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU045]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++            G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV 60

Query: 56 GHLVREIDALD 66
           H ++      
Sbjct: 61 NHTIKNAHTFG 71


>gi|27468117|ref|NP_764754.1| dihydrolipoamide dehydrogenase [Staphylococcus epidermidis ATCC
          12228]
 gi|251810931|ref|ZP_04825404.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282876060|ref|ZP_06284927.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis SK135]
 gi|27315663|gb|AAO04798.1|AE016748_32 dihydrolipoamide dehydrogenase [Staphylococcus epidermidis ATCC
          12228]
 gi|251805611|gb|EES58268.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281295085|gb|EFA87612.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis SK135]
 gi|329725447|gb|EGG61930.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU144]
 gi|329737327|gb|EGG73581.1| dihydrolipoyl dehydrogenase [Staphylococcus epidermidis VCU028]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++            G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV 60

Query: 56 GHLVREIDALD 66
           H ++      
Sbjct: 61 NHTIKNAHTFG 71


>gi|30249252|ref|NP_841322.1| hypothetical protein NE1273 [Nitrosomonas europaea ATCC 19718]
 gi|30180571|emb|CAD85184.1| HI0933-like protein [Nitrosomonas europaea ATCC 19718]
          Length = 393

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
          +  S+DVI+IG G AG   A  A K      LI H    I  
Sbjct: 1  MTHSFDVIIIGAGAAGLMCAIEAGKRERKVWLIDHSV-KIAE 41


>gi|121604250|ref|YP_981579.1| geranylgeranyl reductase [Polaromonas naphthalenivorans CJ2]
 gi|120593219|gb|ABM36658.1| geranylgeranyl reductase [Polaromonas naphthalenivorans CJ2]
          Length = 411

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++ ++ DV+VIG G +G  AA   AK G    LI   
Sbjct: 7  LLPKTCDVLVIGAGPSGSAAAFTLAKTGLDVVLIDQH 43


>gi|331006338|ref|ZP_08329650.1| 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC [gamma
           proteobacterium IMCC1989]
 gi|330419843|gb|EGG94197.1| 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC [gamma
           proteobacterium IMCC1989]
          Length = 748

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + +IGGG AG   A   AK G    L   K  T+ +        G  +G +  ++ A   
Sbjct: 324 IAIIGGGLAGSHTAHALAKKGYQITLFE-KADTLAA-----GASGNAQGIVYGKLSASGD 377

Query: 68  LMGRV 72
            +G +
Sbjct: 378 PLGEM 382


>gi|323473644|gb|ADX84250.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Sulfolobus islandicus REY15A]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|315442652|ref|YP_004075531.1| oxidoreductase [Mycobacterium sp. Spyr1]
 gi|315260955|gb|ADT97696.1| predicted oxidoreductase [Mycobacterium sp. Spyr1]
          Length = 545

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIV+G G AG  AA   A+ G S  ++
Sbjct: 4  DVIVVGAGLAGLVAACELAERGRSVLIV 31


>gi|311069987|ref|YP_003974910.1| thioredoxin reductase [Bacillus atrophaeus 1942]
 gi|310870504|gb|ADP33979.1| thioredoxin reductase [Bacillus atrophaeus 1942]
          Length = 316

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|288803554|ref|ZP_06408985.1| thiazole biosynthesis enzyme [Prevotella melaninogenica D18]
 gi|288333977|gb|EFC72421.1| thiazole biosynthesis enzyme [Prevotella melaninogenica D18]
          Length = 257

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV ++GGG +G  AA   AK G  TAL   K S
Sbjct: 25 DVAIVGGGPSGIVAAYYLAKAGLRTALFDRKLS 57


>gi|284996562|ref|YP_003418329.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus L.D.8.5]
 gi|284444457|gb|ADB85959.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus L.D.8.5]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|229577976|ref|YP_002836374.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus Y.G.57.14]
 gi|228008690|gb|ACP44452.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus Y.G.57.14]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|296140690|ref|YP_003647933.1| alkyl hydroperoxide reductase, F subunit [Tsukamurella
           paurometabola DSM 20162]
 gi|296028824|gb|ADG79594.1| alkyl hydroperoxide reductase, F subunit [Tsukamurella
           paurometabola DSM 20162]
          Length = 525

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 42/156 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DV+V+GGG +G  A+  AA+ G  T ++                            +  
Sbjct: 212 FDVLVVGGGPSGATASVYAARKGIRTGIVA---------------------------ERF 244

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS-QENLDVIQGEV 124
            G +            + N        GP+  A+ E        EI++ Q    + + E 
Sbjct: 245 GGQVL-------DTMAIENFTSVSYTEGPKFAAELENQVRQYDVEIMNTQRGAHLRRDEA 297

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160
            G         S+ +   + ++  TVV++TG   R 
Sbjct: 298 TGMI-------SVELTSGAALQSRTVVISTGARWRS 326


>gi|227826565|ref|YP_002828344.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus M.14.25]
 gi|229583729|ref|YP_002842230.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus M.16.27]
 gi|238618651|ref|YP_002913476.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus M.16.4]
 gi|227458360|gb|ACP37046.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Sulfolobus islandicus M.14.25]
 gi|228018778|gb|ACP54185.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus M.16.27]
 gi|238379720|gb|ACR40808.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Sulfolobus islandicus M.16.4]
 gi|323476293|gb|ADX81531.1| succinate dehydrogenase or fumarate reductase,flavoprotein
          subunit [Sulfolobus islandicus HVE10/4]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|227829207|ref|YP_002830986.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus L.S.2.15]
 gi|227455654|gb|ACP34341.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus L.S.2.15]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|262196945|ref|YP_003268154.1| hypothetical protein Hoch_3761 [Haliangium ochraceum DSM 14365]
 gi|262080292|gb|ACY16261.1| hypothetical protein Hoch_3761 [Haliangium ochraceum DSM 14365]
          Length = 537

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M   SYD+IV+G   AG  A  + A+ G    L+ H 
Sbjct: 1  MPTNSYDLIVVGSDFAGLVAGTLCARRGMRVLLLDHD 37


>gi|218510681|ref|ZP_03508559.1| soluble pyridine nucleotide transhydrogenase [Rhizobium etli
          Brasil 5]
          Length = 119

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD++V+G G AG   A  AAKLG    +I  
Sbjct: 3  QYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQ 34


>gi|194292046|ref|YP_002007953.1| sarcosine oxidase beta subunit, fad dependent oxidoreductase
          [Cupriavidus taiwanensis LMG 19424]
 gi|193225950|emb|CAQ71897.1| Sarcosine oxidase beta subunit, FAD dependent oxidoreductase
          [Cupriavidus taiwanensis LMG 19424]
          Length = 385

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIVIGGG  G  +A   A+ G    L+
Sbjct: 10 DVIVIGGGLHGTSSALHLARKGLRVTLL 37


>gi|229583186|ref|YP_002841585.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          islandicus Y.N.15.51]
 gi|228013902|gb|ACP49663.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus islandicus Y.N.15.51]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|57234663|ref|YP_181286.1| thioredoxin-disulfide reductase [Dehalococcoides ethenogenes 195]
 gi|57225111|gb|AAW40168.1| thioredoxin-disulfide reductase [Dehalococcoides ethenogenes 195]
          Length = 306

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IGGG AG  AA    +    T +I
Sbjct: 6  YDVIIIGGGPAGLTAALYTGRAKLKTLVI 34


>gi|15899114|ref|NP_343719.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          solfataricus P2]
 gi|284173771|ref|ZP_06387740.1| succinate dehydrogenase flavoprotein subunit [Sulfolobus
          solfataricus 98/2]
 gi|13815659|gb|AAK42509.1| Succinate dehydrogenase subunit A (sdhA) [Sulfolobus solfataricus
          P2]
 gi|261600863|gb|ACX90466.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Sulfolobus solfataricus 98/2]
          Length = 566

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M    YD +VIGGG AG  +A   A  G   A+I+
Sbjct: 1  MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVIS 35


>gi|145222213|ref|YP_001132891.1| putative FAD-binding dehydrogenase [Mycobacterium gilvum PYR-GCK]
 gi|145214699|gb|ABP44103.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium gilvum PYR-GCK]
          Length = 545

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIV+G G AG  AA   A+ G S  ++
Sbjct: 4  DVIVVGAGLAGLVAACELAERGRSVLIV 31


>gi|332834818|ref|XP_003312770.1| PREDICTED: LOW QUALITY PROTEIN: pyridine nucleotide-disulfide
          oxidoreductase domain-containing protein 2-like [Pan
          troglodytes]
          Length = 582

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|328753172|gb|EGF66788.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL025PA2]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|327450572|gb|EGE97226.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL087PA3]
 gi|328753989|gb|EGF67605.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL087PA1]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|326795483|ref|YP_004313303.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Marinomonas mediterranea MMB-1]
 gi|326546247|gb|ADZ91467.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Marinomonas mediterranea MMB-1]
          Length = 528

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV+V+G GH G  AAA  AK G    ++
Sbjct: 3  NYDVVVMGAGHNGLVAAAYMAKAGKKVIVL 32


>gi|314915721|gb|EFS79552.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL005PA4]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|291280071|ref|YP_003496906.1| NADH:flavin oxidoreductase/NADH oxidase [Deferribacter
           desulfuricans SSM1]
 gi|290754773|dbj|BAI81150.1| NADH:flavin oxidoreductase/NADH oxidase [Deferribacter
           desulfuricans SSM1]
          Length = 633

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V VIGGG AG  AA   +++G +  L 
Sbjct: 374 VAVIGGGPAGMSAAITLSRMGHNVTLF 400


>gi|289428541|ref|ZP_06430225.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes J165]
 gi|289158235|gb|EFD06454.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes J165]
 gi|313807726|gb|EFS46213.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL087PA2]
 gi|313818763|gb|EFS56477.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL046PA2]
 gi|313820535|gb|EFS58249.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL036PA1]
 gi|313822660|gb|EFS60374.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL036PA2]
 gi|313825407|gb|EFS63121.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL063PA1]
 gi|314925015|gb|EFS88846.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL036PA3]
 gi|314960319|gb|EFT04421.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL002PA2]
 gi|314978655|gb|EFT22749.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL072PA2]
 gi|314987914|gb|EFT32005.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL005PA2]
 gi|314989725|gb|EFT33816.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL005PA3]
 gi|315084761|gb|EFT56737.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL027PA2]
 gi|315085445|gb|EFT57421.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL002PA3]
 gi|315088497|gb|EFT60473.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL072PA1]
 gi|327331734|gb|EGE73471.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL096PA3]
 gi|327443510|gb|EGE90164.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL013PA2]
 gi|328754722|gb|EGF68338.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL020PA1]
 gi|332675630|gb|AEE72446.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes 266]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|289425182|ref|ZP_06426959.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes SK187]
 gi|289154160|gb|EFD02848.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes SK187]
          Length = 470

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 4   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 63

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 64  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 122

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 123 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 172


>gi|223461517|gb|AAI40972.1| RIKEN cDNA 4833409A17 gene [Mus musculus]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|224100737|ref|XP_002311993.1| hypothetical protein POPTRDRAFT_353344 [Populus trichocarpa]
 gi|222851813|gb|EEE89360.1| hypothetical protein POPTRDRAFT_353344 [Populus trichocarpa]
          Length = 811

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +VIV+G G AG  AA    +LG    ++  +    G +      GG G
Sbjct: 47 NVIVVGAGLAGLSAARQLMRLGFKVTVLEGRKRAGGRVYTKRMEGGAG 94


>gi|219519567|gb|AAI44952.1| 4833409A17Rik protein [Mus musculus]
          Length = 580

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|213692757|ref|YP_002323343.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524218|gb|ACJ52965.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458915|dbj|BAJ69536.1| dihydrolipoamide dehydrogenase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 496

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 32/112 (28%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI------------------------THK 37
           ++  +D+++IG G  G   A  AA+LG   AL+                        TH 
Sbjct: 1   MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT 60

Query: 38  TSTI---GSMSCNPAIGGLGKGHL----VREID-ALDGLMGRVADAAGIQFR 81
             T+     +  N ++ G+  G L    +R +   + GL G +A      FR
Sbjct: 61  IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFR 112


>gi|209516569|ref|ZP_03265423.1| HI0933 family protein [Burkholderia sp. H160]
 gi|209503010|gb|EEA03012.1| HI0933 family protein [Burkholderia sp. H160]
          Length = 423

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V VIGGG AG  AA   A+ G    +       + S+     + G G  ++   
Sbjct: 10 VAVIGGGPAGLMAAETLARRGVQVHVY----DAMPSVGRKFLMAGKGGMNITHS 59


>gi|170290728|ref|YP_001737544.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
          cryptofilum OPF8]
 gi|170174808|gb|ACB07861.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
          cryptofilum OPF8]
          Length = 426

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 10/46 (21%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          V VIGGG AG +AA   A  G    LI             P+IGG 
Sbjct: 4  VAVIGGGIAGIQAALDLANQGIKVYLIE----------RTPSIGGR 39


>gi|159464036|ref|XP_001690248.1| geranylgeranyl reductase [Chlamydomonas reinhardtii]
 gi|158284236|gb|EDP09986.1| geranylgeranyl reductase [Chlamydomonas reinhardtii]
          Length = 504

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG +G  AA   AK G  T L+  K        C P  GG     +V E D    
Sbjct: 82  VAVIGGGPSGACAAETLAKGGVETFLLERKLDN-----CKPC-GGAIPLCMVEEFD---- 131

Query: 68  LMGRVADAAGIQFRVLNVK 86
           L   + D    + ++++  
Sbjct: 132 LPMEIIDRRVTKMKMISPS 150


>gi|109820968|sp|Q3U4I7|PYRD2_MOUSE RecName: Full=Pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2
          Length = 580

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|218532833|ref|YP_002423649.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium chloromethanicum CM4]
 gi|218525136|gb|ACK85721.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium chloromethanicum CM4]
          Length = 406

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           +VIGGG  G EAA   A+LG  T LI H    +     +          LVR  ++A   
Sbjct: 150 VVIGGGLLGLEAAVGLARLGVDTTLI-HVMDRVMERQLDHTAA-----RLVRTAMEARGV 203

Query: 68  LMGRVADAAGIQ----FRVLNVKKGPAVRGP 94
            +   AD A I+       L +K G  +   
Sbjct: 204 KVMLSADTAAIEGDGRVERLRMKDGTVIPAD 234


>gi|149690161|ref|XP_001501214.1| PREDICTED: similar to Probable oxidoreductase C10orf33 [Equus
          caballus]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|126735612|ref|ZP_01751357.1| dihydrolipoamide dehydrogenase [Roseobacter sp. CCS2]
 gi|126714799|gb|EBA11665.1| dihydrolipoamide dehydrogenase [Roseobacter sp. CCS2]
          Length = 464

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +++D+IVIG G  G  AA   A+LG   A++       I    G +     +     
Sbjct: 1   MAAQNFDLIVIGAGPGGYVAAIRGAQLGMKVAIVERENLGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+               A G+ + +  V K    R    Q    +  L  + ++    
Sbjct: 61  FHLMHRAKEFG------LKATGVDYDLDAVVK--RSRSVAGQLSGGIGHLMKKNKV---- 108

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              V  GE       K  +      D+       +VL TG   R +
Sbjct: 109 --TVFMGEATIPAKGKVSVKGEKGTDDLT--AKNIVLATGARAREL 150


>gi|125858598|ref|NP_083287.2| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Mus musculus]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|119383936|ref|YP_914992.1| FAD dependent oxidoreductase [Paracoccus denitrificans PD1222]
 gi|119373703|gb|ABL69296.1| FAD dependent oxidoreductase [Paracoccus denitrificans PD1222]
          Length = 492

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  GC +A   A  G  T L+
Sbjct: 13 DYDVIVIGAGAVGCASARQLAGRGFRTLLV 42


>gi|302563899|ref|NP_001181250.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Macaca mulatta]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|229577391|ref|NP_116098.2| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Homo sapiens]
 gi|109820933|sp|Q8N2H3|PYRD2_HUMAN RecName: Full=Pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2
 gi|55957367|emb|CAI14149.1| chromosome 10 open reading frame 33 [Homo sapiens]
 gi|119570269|gb|EAW49884.1| chromosome 10 open reading frame 33, isoform CRA_a [Homo sapiens]
 gi|119570270|gb|EAW49885.1| chromosome 10 open reading frame 33, isoform CRA_a [Homo sapiens]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|50842707|ref|YP_055934.1| dihydrolipoamide dehydrogenase [Propionibacterium acnes KPA171202]
 gi|50840309|gb|AAT82976.1| dihydrolipoamide dehydrogenase [Propionibacterium acnes KPA171202]
 gi|313764244|gb|EFS35608.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL013PA1]
 gi|313791935|gb|EFS40036.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL110PA1]
 gi|313801583|gb|EFS42823.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL110PA2]
 gi|313816336|gb|EFS54050.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL059PA1]
 gi|313827371|gb|EFS65085.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL063PA2]
 gi|313838937|gb|EFS76651.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL086PA1]
 gi|314917910|gb|EFS81741.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL050PA1]
 gi|314920293|gb|EFS84124.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL050PA3]
 gi|314923509|gb|EFS87340.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL001PA1]
 gi|314931513|gb|EFS95344.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL067PA1]
 gi|314955523|gb|EFS99926.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL027PA1]
 gi|314957898|gb|EFT02001.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL002PA1]
 gi|314962591|gb|EFT06691.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL082PA1]
 gi|314966554|gb|EFT10653.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL082PA2]
 gi|314967546|gb|EFT11645.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL037PA1]
 gi|314981480|gb|EFT25574.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL110PA3]
 gi|315077806|gb|EFT49857.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL053PA2]
 gi|315092143|gb|EFT64119.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL110PA4]
 gi|315092925|gb|EFT64901.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL060PA1]
 gi|315098744|gb|EFT70720.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL059PA2]
 gi|315101486|gb|EFT73462.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL046PA1]
 gi|315103553|gb|EFT75529.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL050PA2]
 gi|315105859|gb|EFT77835.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL030PA1]
 gi|315108778|gb|EFT80754.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL030PA2]
 gi|327327378|gb|EGE69154.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL103PA1]
 gi|327453346|gb|EGF00001.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL092PA1]
 gi|327454089|gb|EGF00744.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL083PA2]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|51948490|ref|NP_001004261.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Rattus norvegicus]
 gi|81884356|sp|Q68FT3|PYRD2_RAT RecName: Full=Pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2
 gi|51261038|gb|AAH79368.1| Phytn_dehydro and Pyr_redox domain containing protein RGD1303232
          [Rattus norvegicus]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|13543988|gb|AAH06131.1| Chromosome 10 open reading frame 33 [Homo sapiens]
 gi|123993485|gb|ABM84344.1| chromosome 10 open reading frame 33 [synthetic construct]
 gi|124000555|gb|ABM87786.1| chromosome 10 open reading frame 33 [synthetic construct]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|26332547|dbj|BAC29991.1| unnamed protein product [Mus musculus]
          Length = 115

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|22761240|dbj|BAC11507.1| unnamed protein product [Homo sapiens]
          Length = 581

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|87124952|ref|ZP_01080799.1| hypothetical protein RS9917_03083 [Synechococcus sp. RS9917]
 gi|86167272|gb|EAQ68532.1| hypothetical protein RS9917_03083 [Synechococcus sp. RS9917]
          Length = 510

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  + DV+VIGGG AG  A A+ A+ G    L+
Sbjct: 1  MEPAQDVVVIGGGIAGLTATALLARHGLRVTLL 33


>gi|332159223|ref|YP_004424502.1| ribulose-1,5-biphosphate synthetase [Pyrococcus sp. NA2]
 gi|331034686|gb|AEC52498.1| ribulose-1,5-biphosphate synthetase [Pyrococcus sp. NA2]
          Length = 263

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 2  INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + + Y   DVIV+G G +G  AA   AK G    +I   
Sbjct: 25 MLKEYTESDVIVVGAGPSGLMAAKELAKAGKKVLVIERN 63


>gi|325286313|ref|YP_004262103.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cellulophaga lytica DSM 7489]
 gi|324321767|gb|ADY29232.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cellulophaga lytica DSM 7489]
          Length = 671

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKTFC 64


>gi|325284333|ref|YP_004256873.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Deinococcus proteolyticus MRP]
 gi|324316397|gb|ADY27510.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Deinococcus proteolyticus MRP]
          Length = 312

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 18/22 (81%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAK 26
          SYDV+VIGGG+AG  AA  AA+
Sbjct: 2  SYDVLVIGGGYAGLTAALYAAR 23


>gi|325279150|ref|YP_004251692.1| glucose-inhibited division protein A [Odoribacter splanchnicus
          DSM 20712]
 gi|324310959|gb|ADY31512.1| glucose-inhibited division protein A [Odoribacter splanchnicus
          DSM 20712]
          Length = 343

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          VI+IG G AGCEAA    + G +  LI  ++ T G++
Sbjct: 3  VIIIGAGPAGCEAAYRLTQAGETVELIEKESETGGNL 39


>gi|319936798|ref|ZP_08011210.1| thioredoxin reductase [Coprobacillus sp. 29_1]
 gi|319808066|gb|EFW04638.1| thioredoxin reductase [Coprobacillus sp. 29_1]
          Length = 305

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++YDV++IGGG AG  AA   A+   S  +I  
Sbjct: 2  KTYDVVIIGGGPAGYSAALYNARNARSVLVIEQ 34


>gi|313812738|gb|EFS50452.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL025PA1]
          Length = 467

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      ++           +   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKKKITEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|313682132|ref|YP_004059870.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154992|gb|ADR33670.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Sulfuricurvum kujiense DSM 16994]
          Length = 554

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          YDVIV+G G +G  AA  A + G   AL+         +  N A+   G
Sbjct: 3  YDVIVVGSGISGLYAALNARRAGLHVALVC----KSNPLRSNSAVASGG 47


>gi|296166957|ref|ZP_06849373.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295897696|gb|EFG77286.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 520

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 20/48 (41%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           YD IVIG GH G  AA +  K G  T  +  K    G  S      G
Sbjct: 3  EYDAIVIGAGHNGLAAAVLLQKAGLRTVCLDSKLYAGGMASTVELFDG 50


>gi|300772526|ref|ZP_07082396.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300760829|gb|EFK57655.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 609

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++GGG +G  AA  A++LG  T +I
Sbjct: 27 DVLIVGGGASGTTAAIQASRLGVKTLVI 54


>gi|227537863|ref|ZP_03967912.1| secreted protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242248|gb|EEI92263.1| secreted protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 609

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++GGG +G  AA  A++LG  T +I
Sbjct: 27 DVLIVGGGASGTTAAIQASRLGVKTLVI 54


>gi|254477187|ref|ZP_05090573.1| opine oxidase subunit A [Ruegeria sp. R11]
 gi|214031430|gb|EEB72265.1| opine oxidase subunit A [Ruegeria sp. R11]
          Length = 475

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S+D  ++G G AG  AA   A+ G   A++
Sbjct: 2  QSFDCAIVGAGPAGMSAALTLAERGLRIAVL 32


>gi|148272289|ref|YP_001221850.1| putative thioredoxin reductase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830219|emb|CAN01152.1| putative thioredoxin reductase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 316

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGKGHLVREID 63
           SYDV+VIG G AG  AA    +    T ++ + +     ++  +  +   G   L  E+ 
Sbjct: 15  SYDVVVIGAGPAGLSAALNLVRARRRTLVLDSSRPRNAATLMSHGFVTRDGISPL--ELR 72

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPA-------VRGPRTQADRELYRLAM 107
            L  +     +    Q  V+     PA        +G R   DRE++   +
Sbjct: 73  KLGQVEVEGYEEGEFQLAVV-QSAEPAEGGFTIRAKGVRRAPDREVHARRI 122


>gi|120609770|ref|YP_969448.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidovorax citrulli AAC00-1]
 gi|120588234|gb|ABM31674.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Acidovorax citrulli AAC00-1]
          Length = 334

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          DV+VIGGG AG  AA   A+   S  L+    S +  +  +    G   G
Sbjct: 23 DVLVIGGGPAGLTAALYLARFRRSVVLVDAGDSRVAKIPRSHNYPGFVDG 72


>gi|227818870|ref|YP_002822841.1| oxidoreductase [Sinorhizobium fredii NGR234]
 gi|36959129|gb|AAQ87554.1| probable Oxidoreductase [Sinorhizobium fredii NGR234]
 gi|227337869|gb|ACP22088.1| putative oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 425

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 26/174 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV VIGGG  G  AA   A  GA   ++       G+   N      G  H    + A
Sbjct: 25  HYDVAVIGGGFTGLGAARQLAMAGAKVIVLEAGAVGSGASGRNGGHLNNGIAHSFAAVKA 84

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE--------N 116
             G     A+ A   +R  +       R    +     +R A + ++ S+         N
Sbjct: 85  ELG-----AERAAALYRAYDASVDTIERIVAEENIDCSFRRAGKLKLASKPAHFDAIARN 139

Query: 117 LDVIQGEVA---------GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            +++  EV              E            +M+   + ++  G F+ G+
Sbjct: 140 FEIVNREVDPDTALLTRNDLRDE----VGSDCFHGAMLSKKSAMMHMGRFVVGL 189


>gi|320159415|ref|YP_004172639.1| dihydrolipoamide dehydrogenase [Anaerolinea thermophila UNI-1]
 gi|319993268|dbj|BAJ62039.1| dihydrolipoamide dehydrogenase [Anaerolinea thermophila UNI-1]
          Length = 465

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHL 58
             YDVIVIG G  G  +A  +A+LG  TA++  +        +G +     +      H 
Sbjct: 2   NEYDVIVIGAGPGGYVSAIRSAQLGLKTAIVDKQWLGGVCLNVGCIPSKSLLKNAEVAHT 61

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           +RE               G  F  L +    AV+  R  +DR    +     ++ +  +D
Sbjct: 62  LRERGR----------EFGFAFENLTLDYSVAVKRSRQVSDRLTKGVGF---LMKKNGID 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGTFLR 159
           V  G      T ++ +  +  +D  +  ++   +++ TG    
Sbjct: 109 VHMGTAR--LTARDTVR-VTDKDGKVTDLKAKNIIIATGASAA 148


>gi|321255099|ref|XP_003193307.1| amine oxidase [Cryptococcus gattii WM276]
 gi|317459777|gb|ADV21520.1| Amine oxidase, putative [Cryptococcus gattii WM276]
          Length = 531

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIG G+AG  AA    + G S AL+
Sbjct: 41 EYDVVVIGAGYAGLMAARELVQRGHSVALL 70


>gi|302024358|ref|ZP_07249569.1| thioredoxin reductase [Streptococcus suis 05HAS68]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +VIG G AG  AA  A +     AL+
Sbjct: 2  YDTVVIGAGPAGMTAALYAGRSNLKVALL 30


>gi|284030697|ref|YP_003380628.1| amine oxidase [Kribbella flavida DSM 17836]
 gi|283809990|gb|ADB31829.1| amine oxidase [Kribbella flavida DSM 17836]
          Length = 444

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DV+V+G G AG   A    + G S  ++     T+G       I G
Sbjct: 9  DVVVVGAGLAGLNCALALQEAGVSVTVLEAH-DTVGGRVRTDVIDG 53


>gi|229815544|ref|ZP_04445871.1| hypothetical protein COLINT_02591 [Collinsella intestinalis DSM
           13280]
 gi|229808774|gb|EEP44549.1| hypothetical protein COLINT_02591 [Collinsella intestinalis DSM
           13280]
          Length = 524

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 89/267 (33%), Gaps = 55/267 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLVR 60
           ++   DV+VIGGG AG  ++  AA+ GA+  +        G  S  P   GLG  G    
Sbjct: 1   MHEETDVLVIGGGIAGIVSSIEAARAGANVTIACASP-LFGGSSFYPGTWGLGLIGPSDE 59

Query: 61  EIDA-----LDGLMGRVADAAGIQFRVLNVK----------KGPAVRGPRTQADRE---- 101
           E +A     ++ +   VAD   ++  V N++            P  R    ++ RE    
Sbjct: 60  EDEADLIATIENVGCGVADPTLVETFVHNIRPAIEWLEQELGVPLKRPSSAKSAREVTFI 119

Query: 102 ---LYRLAMQREILSQENLDVIQGEVAGFNTE--------------KNIISSIVMQDNSM 144
               +   + R I  +    V + E+     E                 +   ++ D   
Sbjct: 120 PCFDHTNRLWRGIKREAFERVARAEIERLGIELLERCELMEIVRDQHGPVIGAILYDRRE 179

Query: 145 -----IRCSTVVLTTGT----FLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR 195
                    +V+L +G     F R +     L    G   D+       S +  +F    
Sbjct: 180 QELFPFPAKSVILCSGGTGGLFERSLTSRDVLSSAHGIALDAGC-----SLVNIEFMQMM 234

Query: 196 LKTGTPAR---LDGKTIIWDKTEKQFA 219
               +PAR    + KT  +   E    
Sbjct: 235 PGLVSPARGIVFNEKTFRYAVFEDPAG 261


>gi|254430383|ref|ZP_05044086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Cyanobium sp. PCC 7001]
 gi|197624836|gb|EDY37395.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Cyanobium sp. PCC 7001]
          Length = 484

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA+ G + A++  +    G+     C P+   L     VRE
Sbjct: 11 DFDVIVIGAGYGGFDAAKHAAEHGLTVAIVEGR-DMGGTCVNRGCVPSKALLAASGRVRE 69

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 70 LADAEHLAGFGIHAAPVRFE 89


>gi|82799287|gb|ABB92213.1| thioredoxin reductase [uncultured marine type-A Synechococcus
          5B2]
          Length = 321

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DV++IGGG AGC  A   A+    T ++    S IG+++    I  
Sbjct: 9  DVLIIGGGPAGCSCALYTARSSLKTCILDKN-SAIGALAITHKIAN 53


>gi|91778341|ref|YP_553549.1| hypothetical protein Bxe_B1769 [Burkholderia xenovorans LB400]
 gi|91691001|gb|ABE34199.1| putative membrane protein [Burkholderia xenovorans LB400]
          Length = 446

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLGKGHLV 59
           +  +  DV++ G G  GC AA   A+ G S  ++    S I     + A G    +G   
Sbjct: 17  VFPKHADVVIAGAGIMGCAAAYYLARRGLSVVVL--DKSRIAGQQSSRAWGFVRQQGREA 74

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E+  +   +             L  ++G  +     + D   ++  M  E+  Q  LD 
Sbjct: 75  AEVPLMMAGIKLWEKLESELDFDLEWRQGGCLYVATGEEDWSSFQQWM--EVARQYGLDT 132

Query: 120 IQGEVAGFNTEKNIISSIVMQDNS 143
                     E+  I ++V     
Sbjct: 133 R-------TIERKQIDTVVTGMQG 149


>gi|27380967|ref|NP_772496.1| hypothetical protein bll5856 [Bradyrhizobium japonicum USDA 110]
 gi|27354133|dbj|BAC51121.1| bll5856 [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG---HLVREID 63
           D+ VIG G AG   A  AA+LGAS A++  +   IG  +    +G +  G    L   I+
Sbjct: 28  DICVIGAGLAGLSIALEAARLGASVAVLEGR--HIGWNASGNQLGTVMPGFALPLTDLIE 85

Query: 64  ALDGLMGRVAD---AAGIQFRVLNVKK----GPAVRGPRTQA------DRELYRLAMQRE 110
            +     R        G +F   N  +    G A      +       DR + RL M  E
Sbjct: 86  RIGFEDARELWTLSKEGAEFVRANATEENMPGIAPSDGVLEVSNVDTGDRLISRLQMLHE 145

Query: 111 ILSQE 115
               E
Sbjct: 146 DFDTE 150


>gi|330873514|gb|EGH07663.1| hypothetical protein PSYMP_03975 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 424

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IGGG AG  AA + ++ G    L       + S+     + G+G  ++    +A   
Sbjct: 24  VAIIGGGPAGLMAAEILSQAGFEVDLY----DGMPSVGRKFLLAGVGGMNITHS-EAYPA 78

Query: 68  LMGRVADAAGIQFRVLNVKKGPAV 91
            +GR A+ + +   +L      A+
Sbjct: 79  FLGRYAERSAMIAPMLRAFDANAL 102


>gi|315640624|ref|ZP_07895730.1| thioredoxin reductase [Enterococcus italicus DSM 15952]
 gi|315483652|gb|EFU74142.1| thioredoxin reductase [Enterococcus italicus DSM 15952]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  AA  AA+   +  +I
Sbjct: 14 DVIIIGAGPAGMTAALYAARANLTVVMI 41


>gi|310644449|ref|YP_003949208.1| fad dependent oxidoreductase [Paenibacillus polymyxa SC2]
 gi|309249400|gb|ADO58967.1| FAD dependent oxidoreductase [Paenibacillus polymyxa SC2]
          Length = 494

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            YDVIVIG G  G   AA  + LG  TA+    T
Sbjct: 2  NQYDVIVIGAGLGGLSCAARLSALGYRTAVFESHT 36


>gi|308071217|ref|YP_003872822.1| Phytoene dehydrogenase [Paenibacillus polymyxa E681]
 gi|305860496|gb|ADM72284.1| Phytoene dehydrogenase [Paenibacillus polymyxa E681]
          Length = 494

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            YDVIVIG G  G   AA  + LG  TA+    T
Sbjct: 2  NQYDVIVIGAGLGGLSCAARLSALGYRTAVFESHT 36


>gi|254773257|ref|ZP_05214773.1| FAD dependent oxidoreductase, putative [Mycobacterium avium
          subsp. avium ATCC 25291]
          Length = 524

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
            YD IVIG GH G  AA +  K G  T  +  K    G  S      G
Sbjct: 2  NDYDAIVIGAGHNGLTAAVLLQKAGLRTLCLDAKLYAGGMASTVELFDG 50


>gi|209546214|ref|YP_002278104.1| mercuric reductase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539071|gb|ACI59004.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 455

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTS-----TIGSMSCNPAIGGLGK 55
          +++D IVIG G AG    ++AA++   G   ALI  K         G M     +     
Sbjct: 2  KNFDAIVIGAGQAG---PSLAARMVEKGMKVALIERKFLGGTCVNAGCMPTKTLVASARA 58

Query: 56 GHLVREIDALD 66
           H+ R   A  
Sbjct: 59 AHVARSGAAYG 69


>gi|118466118|ref|YP_879492.1| FAD dependent oxidoreductase, putative [Mycobacterium avium 104]
 gi|118167405|gb|ABK68302.1| FAD dependent oxidoreductase, putative [Mycobacterium avium 104]
          Length = 524

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
            YD IVIG GH G  AA +  K G  T  +  K    G  S      G
Sbjct: 2  NDYDAIVIGAGHNGLTAAVLLQKAGLRTLCLDAKLYAGGMASTVELFDG 50


>gi|57237464|ref|YP_178477.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          RM1221]
 gi|283955832|ref|ZP_06373323.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 1336]
 gi|57166268|gb|AAW35047.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          RM1221]
 gi|283792787|gb|EFC31565.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 1336]
 gi|315057832|gb|ADT72161.1| Succinate dehydrogenase flavoprotein subunit [Campylobacter
          jejuni subsp. jejuni S3]
          Length = 663

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|41406300|ref|NP_959136.1| hypothetical protein MAP0202 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41394648|gb|AAS02519.1| hypothetical protein MAP_0202 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 524

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 20/49 (40%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
            YD IVIG GH G  AA +  K G  T  +  K    G  S      G
Sbjct: 2  NDYDAIVIGAGHNGLTAAVLLQKAGLRTLCLDAKLYAGGMASTVELFDG 50


>gi|86153892|ref|ZP_01072095.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni HB93-13]
 gi|85842853|gb|EAQ60065.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni HB93-13]
          Length = 663

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|86149114|ref|ZP_01067346.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CF93-6]
 gi|86151174|ref|ZP_01069389.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 260.94]
 gi|88597361|ref|ZP_01100596.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 84-25]
 gi|121612275|ref|YP_001000120.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 81-176]
 gi|157414704|ref|YP_001481960.1| fumarate reductase [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005078|ref|ZP_02270836.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 81-176]
 gi|218562067|ref|YP_002343846.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni NCTC 11168]
 gi|315123966|ref|YP_004065970.1| fumarate reductase [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
 gi|85840472|gb|EAQ57729.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni CF93-6]
 gi|85841521|gb|EAQ58768.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 260.94]
 gi|87250098|gb|EAQ73056.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 81-176]
 gi|88190422|gb|EAQ94396.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 84-25]
 gi|112359773|emb|CAL34559.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni NCTC 11168]
 gi|157385668|gb|ABV51983.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 81116]
 gi|284925680|gb|ADC28032.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni IA3902]
 gi|307747344|gb|ADN90614.1| Fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni M1]
 gi|315017688|gb|ADT65781.1| fumarate reductase [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
 gi|315932656|gb|EFV11586.1| Fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 327]
          Length = 663

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|315638738|ref|ZP_07893911.1| fumarate reductase subunit A [Campylobacter upsaliensis JV21]
 gi|315481147|gb|EFU71778.1| fumarate reductase subunit A [Campylobacter upsaliensis JV21]
          Length = 667

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  +   G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLGNGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|300787182|ref|YP_003767473.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299796696|gb|ADJ47071.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 396

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGS-MSCNPAIGGLGKGHLVRE 61
          YDVIV+G   AG   A + A+ G    L+    + + T+ + +   P I  L +  ++ +
Sbjct: 2  YDVIVVGARCAGAPTALLLARAGHRVLLLDKAAYGSDTLSTHLVHQPGIAALARWGVLDQ 61

Query: 62 IDALD 66
          + A  
Sbjct: 62 VRASG 66


>gi|298675585|ref|YP_003727335.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
 gi|298288573|gb|ADI74539.1| geranylgeranyl reductase [Methanohalobium evestigatum Z-7303]
          Length = 383

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVRE-- 61
           DVIV+G G AG  AA   AK G ST +I   +         +C   I      HL  +  
Sbjct: 3   DVIVVGAGPAGSTAAEYTAKAGLSTMIIEKDSLPRDK----TCAGGISSQALKHLDYDVP 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++ +           G Q       +  A    R + D  L   A+       +   V  
Sbjct: 59  VNLVKRQCFGARVLYGNQVLESRSDELIASMVSRKEFDNYLTTKAVNSGTKLLQKTRVKS 118

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            ++   + E +  + +        +   V+   G
Sbjct: 119 LDIKSNHVEIHTTAGV-------FKTKVVIGADG 145


>gi|325676365|ref|ZP_08156044.1| oxidoreductase [Rhodococcus equi ATCC 33707]
 gi|325552926|gb|EGD22609.1| oxidoreductase [Rhodococcus equi ATCC 33707]
          Length = 483

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 51/172 (29%), Gaps = 38/172 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M    +DVIVIGGG AG E AA  A                        I G  +   + 
Sbjct: 1   MAPEDFDVIVIGGGPAG-ENAAAYA------------------------IAGSDRTAALV 35

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS----QEN 116
           E + + G     A              G A   P  +     Y L  +  +        N
Sbjct: 36  EHELVGGECSYWACMPSKALLRPVEVLGTARHMPGVEEKVNAYGLDTEAVLARRDGFTHN 95

Query: 117 LD-----VIQGEV-AGFNTEKNIISSI--VMQDNSMIRCS-TVVLTTGTFLR 159
           LD     +    V          I+    V   + ++R    VVL TGT   
Sbjct: 96  LDDSSQVLWADSVGIDVIRGTARITGAREVTVGDRVLRARHAVVLATGTRAS 147


>gi|296414135|ref|XP_002836758.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295631597|emb|CAZ80949.1| unnamed protein product [Tuber melanosporum]
          Length = 466

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 21/183 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STI-------GSMSCNPAIGG 52
           + SYDV ++G G  GC  A    + G    L+         I       G +     +G 
Sbjct: 12  DNSYDVAIVGAGIIGCSLAFALGEQGRRVLLLERDLSEPDRIVGELLQPGGVQALEKLGL 71

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
                 +  I           +  G+         G A  G      +  + + ++    
Sbjct: 72  RDCLEGIDAIPVYGYQCIYHGE--GVTIPYPRDPDGRAPEGRSFHHGK--FIMNLREAAG 127

Query: 113 SQENLDVIQGEVAGFNTEKN--IISSIVMQDNS-----MIRCSTVVLTTGTFLRGVIHIG 165
           +  N+ +++        +++   +  ++ +            S  V   G          
Sbjct: 128 NAPNVTIVETTAREIIKDESSGQVLGVICKKKGFDELDYYFASLTVSADGYASNFRKRCI 187

Query: 166 KLK 168
             K
Sbjct: 188 DRK 190


>gi|291297698|ref|YP_003508976.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Stackebrandtia nassauensis
          DSM 44728]
 gi|290566918|gb|ADD39883.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DVIV+G G AG  A A  A+ G    L+  +           ++GG  
Sbjct: 4  DVIVVGAGLAGLVATAELAEAGKKVILVDQEPEQ--------SLGGQA 43


>gi|169630115|ref|YP_001703764.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          abscessus ATCC 19977]
 gi|169242082|emb|CAM63110.1| Probable soluble pyridine nucleotide transhydrogenase
          [Mycobacterium abscessus]
          Length = 483

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          SYD++VIG G  G +AA  AAKLG S A++      +    C     G      +RE
Sbjct: 18 SYDLVVIGSGPGGQKAAIAAAKLGKSVAVVE--RDNMLGGVCTNT--GTIPSKTLRE 70


>gi|146305999|ref|YP_001186464.1| glycine oxidase ThiO [Pseudomonas mendocina ymp]
 gi|145574200|gb|ABP83732.1| glycine oxidase ThiO [Pseudomonas mendocina ymp]
          Length = 361

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGP--AVRGPRTQADRELY-RLAMQREILSQENLDVI 120
           A +G + R  D A +  +V  + +G   A+  P     R      A++  + +  N+++ 
Sbjct: 105 AREGRVLRGIDMASVHEQVPVLGEGFTRAIHMPGVANVRNPRLVKALRAALAAMPNVELR 164

Query: 121 QGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP- 178
           +   V GF  E   I  ++  D   +R   VVL  G +   ++    L++P   +     
Sbjct: 165 EHCPVTGFIQEDGQIRGVITSDG-EVRAERVVLAAGAWSGEMLRTLGLELPVEPVKGQMI 223

Query: 179 -SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224
                 N         GR       R DG  +I    E    D+   
Sbjct: 224 LYKCAENFLPSMVLARGRYAI---PRRDGHILIGSTLEYAGFDKTPT 267


>gi|116333294|ref|YP_794821.1| thioredoxin reductase [Lactobacillus brevis ATCC 367]
 gi|116098641|gb|ABJ63790.1| Thioredoxin reductase [Lactobacillus brevis ATCC 367]
          Length = 313

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +SYDVIVIG G  G   A  A++   S  ++
Sbjct: 2  KSYDVIVIGAGPGGMTGALYASRANLSVLML 32


>gi|86143754|ref|ZP_01062130.1| succinate dehydrogenase [Leeuwenhoekiella blandensis MED217]
 gi|85829797|gb|EAQ48259.1| succinate dehydrogenase [Leeuwenhoekiella blandensis MED217]
          Length = 667

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKTFC 64


>gi|254254968|ref|ZP_04948285.1| Thioredoxin reductase [Burkholderia dolosa AUO158]
 gi|124899613|gb|EAY71456.1| Thioredoxin reductase [Burkholderia dolosa AUO158]
          Length = 304

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGK--GHL 58
           ++  ++VIVIGG  AG  AA   A+      +I   +     +   +   G  GK    +
Sbjct: 1   MHTDHEVIVIGGSFAGLSAAMQLARARRRVLVIDGGRPRNRFAAHAHGFFGQDGKPPAQI 60

Query: 59  VREIDAL----------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           V E  A           DG     A  A  +F V          G R  ADR +    ++
Sbjct: 61  VDEAAAQLAAYPTVQRIDGEARSAARDANGRFSVTLA------DGRRASADRLILATGVR 114

Query: 109 REILSQENLDVIQG 122
             +     L+   G
Sbjct: 115 DVLPVLPGLESRWG 128


>gi|189347589|ref|YP_001944118.1| FAD dependent oxidoreductase [Chlorobium limicola DSM 245]
 gi|189341736|gb|ACD91139.1| FAD dependent oxidoreductase [Chlorobium limicola DSM 245]
          Length = 397

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + ++VIV+GGG +G   A  + K G  T L+    ST+G    +P     GK +   E+ 
Sbjct: 2   KEHEVIVVGGGISGLSLAYYSNKAGFKTVLLEKN-STVGGSFASPKYAASGK-NFWLELG 59

Query: 64  ALDGL-----MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
           A         +  + +  G+   ++   K P       Q    L +L++   ++S  NL 
Sbjct: 60  AHTCYSSYQNLLDIIEGCGVSDTIIPRAKVPFSLMIDGQVKSILSQLSIPELLMSAPNLF 119

Query: 119 VIQGEVAGFNTEKNIISS 136
            ++       +  + I  
Sbjct: 120 KLKKTGQSVKSYYSKIVG 137


>gi|317489224|ref|ZP_07947741.1| FAD dependent oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325832215|ref|ZP_08165214.1| FAD dependent oxidoreductase [Eggerthella sp. HGA1]
 gi|316911625|gb|EFV33217.1| FAD dependent oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|325486051|gb|EGC88505.1| FAD dependent oxidoreductase [Eggerthella sp. HGA1]
          Length = 433

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D IV+G G AG  AA   AK G ST ++                GG    H ++
Sbjct: 1  MAETDFDAIVVGSGCAGAVAAYELAKAGKSTLVV----ERGNFAGAKNMTGGRIYSHSLK 56

Query: 61 EI 62
          ++
Sbjct: 57 KV 58


>gi|317470288|ref|ZP_07929682.1| hypothetical protein HMPREF1011_00029 [Anaerostipes sp. 3_2_56FAA]
 gi|316902261|gb|EFV24181.1| hypothetical protein HMPREF1011_00029 [Anaerostipes sp. 3_2_56FAA]
          Length = 406

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 124/422 (29%), Gaps = 72/422 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIV+GGG AG  AA  +A  G    L          +     I G G+ +L    D  D
Sbjct: 3   DVIVVGGGAAGMIAAICSAGEGNRVTL----LEKNEKLGKKLFITGKGRCNLTNAGDIED 58

Query: 67  GL---------------------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL 105
            +                     M    +  G   +V    +   V    +   R + R 
Sbjct: 59  LMGHVVTNREFLYSAFYSFTNEQMMEWMEQWGCPVKVERGNRVFPVSDKSSDVIRAMERE 118

Query: 106 AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165
             +R++  + N +V Q       TE   I  + +     ++   VV+ TG          
Sbjct: 119 LGKRKVSVKLNTEVRQ-----ILTENGSIRGVEVNGGRKMKADKVVIATGGVSYPSTGST 173

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARL----DGKTIIWDKTEKQFADE 221
                  +        L  + + F+ D           L            +  K+F + 
Sbjct: 174 GDGHSFAKKTGHKVTHLDPALVPFNIDGTVCSRLQGLSLKNVEASLYADGKRIYKEFGEM 233

Query: 222 RLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE-- 279
               F      I        +     +    I      S            +   + E  
Sbjct: 234 LFTHFGISGP-IIISASSYAVRHKGKQLKFCIDLKPALSEEQLDQRILKDFQKNINKEFK 292

Query: 280 DKIVRFGERNGHQIFLE----PEGLNTDVV------YPNGISTALPEEIQHQFIRTIPGL 329
           + + +   +    + LE    PE      +          +  A+P       + +  G 
Sbjct: 293 NSLGKLLPKKMIPVILELSGIPEDKKVHEITKDERRSLTALLKAMPL-----MVTSTRGF 347

Query: 330 EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTGY 375
           ++  I   G  ++   INP     T+E+KK+ GL+ AG              QI  +TGY
Sbjct: 348 KEAIITHGGVDVKE--INP----STMESKKVQGLYFAGEVLDLDALTGGYNLQIAWSTGY 401

Query: 376 EE 377
             
Sbjct: 402 LA 403


>gi|289435739|ref|YP_003465611.1| hypothetical protein lse_2378 [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|289171983|emb|CBH28529.1| trxB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 319

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVI+IG G AG  AA   ++    T +I
Sbjct: 6  KIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|253564050|ref|ZP_04841507.1| NAD-utilizing dehydrogenase [Bacteroides sp. 3_2_5]
 gi|251947826|gb|EES88108.1| NAD-utilizing dehydrogenase [Bacteroides sp. 3_2_5]
 gi|301161649|emb|CBW21189.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 529

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKDVRERKKDLAQISREHRVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDVIQ--GEV------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +I+  GEV           E+  +  I            V+L TG   R V 
Sbjct: 198 ENMRN-TIIECGGEVHFKTRMDALIIEQGEVKGIETNTGETFLGP-VILATGHSARDVY 254


>gi|242796244|ref|XP_002482758.1| thioredoxin reductase, putative [Talaromyces stipitatus ATCC
          10500]
 gi|218719346|gb|EED18766.1| thioredoxin reductase, putative [Talaromyces stipitatus ATCC
          10500]
          Length = 387

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++  YDVIVIGGG AG  A +  +++   T ++
Sbjct: 23 VVSTDYDVIVIGGGPAGLSATSGLSRVKRKTLML 56


>gi|254432050|ref|ZP_05045753.1| geranylgeranyl reductase [Cyanobium sp. PCC 7001]
 gi|197626503|gb|EDY39062.1| geranylgeranyl reductase [Cyanobium sp. PCC 7001]
          Length = 475

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA V AK G  T +   K     +  C    GG     +V E D    
Sbjct: 4   VAVVGGGPSGSCAAEVLAKAGIQTWIFERKLD--NAKPC----GGAIPLCMVSEFD---- 53

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L   + D      R+++              D+  Y    +REIL       ++   A  
Sbjct: 54  LPEEIIDRKVRNMRMISPSNREVDIHLD---DQNEYIGMCRREILD----AFLRNRAADL 106

Query: 128 NTEKNIISSIVMQ 140
               ++I+ +V +
Sbjct: 107 --GAHLINGLVTK 117


>gi|196006529|ref|XP_002113131.1| hypothetical protein TRIADDRAFT_56993 [Trichoplax adhaerens]
 gi|190585172|gb|EDV25241.1| hypothetical protein TRIADDRAFT_56993 [Trichoplax adhaerens]
          Length = 1023

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 25/184 (13%)

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR--SLLKSLV 482
           R  +S A+ R   RP ++  R      K   + + R+++  +  Q+    R  +L + L+
Sbjct: 119 RPLSSPAKGR---RPQSSPVR-----RKNNAVVDSRREKVKQIRQKQEEERIKALKEKLL 170

Query: 483 LTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKF-SSLVIERLQIES- 540
              + +    ++ + + K R     L     SI +  +   D        + ER Q  + 
Sbjct: 171 QKEEQVRQRRLTLESNRKERIRMRQLRKSKQSISSSTTSLKDRLALRDEKIKERRQQMAA 230

Query: 541 ----SYAAYTGRQMIEAKEIKFEEKRLIPKDF---DY------SSLPALSNELKEKLSIL 587
                    T       ++ + E KRL+ + F   D+        + A   E ++KL+  
Sbjct: 231 SGGNKSRIRTENIRQMNQQREEERKRLLQERFAERDWKMKQRKEQVEAEKRERRQKLTRF 290

Query: 588 KPFN 591
           +P  
Sbjct: 291 QPAT 294


>gi|209885402|ref|YP_002289259.1| dihydrolipoyl dehydrogenase [Oligotropha carboxidovorans OM5]
 gi|209873598|gb|ACI93394.1| dihydrolipoyl dehydrogenase [Oligotropha carboxidovorans OM5]
          Length = 473

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + S+DV+VIG G  G   A  AA+LG  TA++
Sbjct: 1  MADTSFDVVVIGAGPGGYVTAIRAAQLGFKTAIV 34


>gi|154687601|ref|YP_001422762.1| hypothetical protein RBAM_032010 [Bacillus amyloliquefaciens
          FZB42]
 gi|154353452|gb|ABS75531.1| TrxB [Bacillus amyloliquefaciens FZB42]
          Length = 317

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAAVYTSRANLSTLMI 36


>gi|187479728|ref|YP_787753.1| dehydrogenase [Bordetella avium 197N]
 gi|115424315|emb|CAJ50868.1| putative dehydrogenase [Bordetella avium 197N]
          Length = 481

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  ++DV+V G G AG  AA  AA+ GA   ++
Sbjct: 1  MQNNFDVVVAGCGVAGLSAAVSAAESGAKVVVL 33


>gi|108797611|ref|YP_637808.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. MCS]
 gi|119866698|ref|YP_936650.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. KMS]
 gi|108768030|gb|ABG06752.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. MCS]
 gi|119692787|gb|ABL89860.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. KMS]
          Length = 466

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG +TA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLNTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G      G  F
Sbjct: 63 TKEAKTFGISGEATFDYGAAF 83


>gi|60680122|ref|YP_210266.1| hypothetical protein BF0553 [Bacteroides fragilis NCTC 9343]
 gi|265765260|ref|ZP_06093535.1| NAD-utilizing dehydrogenase [Bacteroides sp. 2_1_16]
 gi|60491556|emb|CAH06308.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|263254644|gb|EEZ26078.1| NAD-utilizing dehydrogenase [Bacteroides sp. 2_1_16]
          Length = 529

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKDVRERKKDLAQISREHRVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDVIQ--GEV------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +I+  GEV           E+  +  I            V+L TG   R V 
Sbjct: 198 ENMRN-TIIECGGEVHFKTRMDALIIEQGEVKGIETNTGETFLGP-VILATGHSARDVY 254


>gi|53711894|ref|YP_097886.1| NAD-utilizing dehydrogenase [Bacteroides fragilis YCH46]
 gi|52214759|dbj|BAD47352.1| NAD-utilizing dehydrogenases [Bacteroides fragilis YCH46]
          Length = 529

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 33/179 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKDVRERKKDLAQISREHRVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDVIQ--GEV------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +I+  GEV           E+  +  I            V+L TG   R V 
Sbjct: 198 ENMRN-TIIECGGEVHFKTRMDALIIEQGEVKGIETNTGETFLGP-VILATGHSARDVY 254


>gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta
           thermophila PT]
 gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta
           thermophila PT]
          Length = 791

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV+VIGGG AG  AA   A  G    L+
Sbjct: 147 DVLVIGGGVAGISAALDLANAGLRVYLV 174


>gi|85705250|ref|ZP_01036349.1| dihydrolipoamide dehydrogenase [Roseovarius sp. 217]
 gi|85670123|gb|EAQ24985.1| dihydrolipoamide dehydrogenase [Roseovarius sp. 217]
          Length = 464

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 21/166 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M + +YD+IVIG G  G  AA   A+LG   A++      +G +     C P    L   
Sbjct: 1   MASTTYDMIVIGAGPGGYVAAIRGAQLGLKVAIVE--REHMGGICLNWGCIPTKAMLRSS 58

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +   +                   V+   +G A +     A            ++ +  
Sbjct: 59  EVFHLMHRAKEFGLSAEGIGYDLDAVVKRSRGVAKQLSGGVA-----------HLMKKNK 107

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
           + V+ G        K  +S +     +  +    ++L TG   R +
Sbjct: 108 VTVVMGAAT--LPAKGKVS-VKTDKGTEELTAKHIILATGARAREL 150


>gi|83952528|ref|ZP_00961259.1| putative oxidoreductase protein [Roseovarius nubinhibens ISM]
 gi|83836201|gb|EAP75499.1| putative oxidoreductase protein [Roseovarius nubinhibens ISM]
          Length = 791

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 51/213 (23%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGAS-TALITHKTST----------IGSMSCNPAIGGLGKG 56
           V++IGGG  G   A   AK GA+   L+     T          +G +   P +  L   
Sbjct: 4   VLIIGGGAIGLSVAYHLAKRGAADVTLLERNRLTSGTSWHAAGIVGPLRATPNMTALASA 63

Query: 57  HL--VREIDALDG---------------------LMGRVADAAGIQ-------------F 80
            L    E++A  G                      + R+AD    Q              
Sbjct: 64  ALEVFPELEAETGMATGYRRTGGYWLARVPERLDELHRIADLGRTQGLTPSVIAAEEVGL 123

Query: 81  RVLNVKK-GPAVRGP-RTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSI 137
            +L++ +   A+  P     +     +A  R   ++  + + +G EVA    E + ++ +
Sbjct: 124 PMLDLSQHVGALHVPEDANVNPVDLCMAYARGAKNR-GVTLREGVEVARLLVEGHRVTGV 182

Query: 138 VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            + D   ++   VV+ TG + R +     + +P
Sbjct: 183 ALADGREMQADQVVIATGAWSRELAATAGVALP 215


>gi|330816704|ref|YP_004360409.1| Dihydrolipoamide dehydrogenase [Burkholderia gladioli BSR3]
 gi|327369097|gb|AEA60453.1| Dihydrolipoamide dehydrogenase [Burkholderia gladioli BSR3]
          Length = 476

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DV+VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDVVVIGAGPGGYIAAVRAAQLGKTVACI 33


>gi|320031993|gb|EFW13949.1| predicted protein [Coccidioides posadasii str. Silveira]
          Length = 273

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +SYDVIV+G G +G +AA      G S  ++
Sbjct: 6  TKSYDVIVVGAGLSGLQAAYDIQNAGLSCLVL 37


>gi|296159504|ref|ZP_06842328.1| HI0933 family protein [Burkholderia sp. Ch1-1]
 gi|295890212|gb|EFG70006.1| HI0933 family protein [Burkholderia sp. Ch1-1]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 2  INRSYD---VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          ++ S+D   V VIGGG AG  AA   A  G    +       + S+     + G G  ++
Sbjct: 1  MSSSFDSARVAVIGGGPAGLMAAEALASQGVQVDVY----DAMPSVGRKFLMAGKGGMNI 56

Query: 59 VRE 61
             
Sbjct: 57 THS 59


>gi|255023596|ref|ZP_05295582.1| thioredoxin reductase [Listeria monocytogenes FSL J1-208]
          Length = 141

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++    T +I
Sbjct: 5  EKIYDVIIIGAGPAGMTAALYTSRADLDTLMI 36


>gi|294949251|ref|XP_002786118.1| glycerol-3-phosphate dehydrogenase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239900246|gb|EER17914.1| glycerol-3-phosphate dehydrogenase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 691

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +D+IV+GGG  G   A   A  G   AL+       G+ S +  +   G G+L   +  
Sbjct: 114 EFDIIVVGGGATGSSIALDGASRGLKVALLERNDFGSGTSSRSTKLLHGGIGYLKSALLG 173

Query: 65  LDGLMGRVADAA 76
           +D  M R+   +
Sbjct: 174 MDLQMLRMIYQS 185


>gi|153854917|ref|ZP_01996140.1| hypothetical protein DORLON_02146 [Dorea longicatena DSM 13814]
 gi|149752619|gb|EDM62550.1| hypothetical protein DORLON_02146 [Dorea longicatena DSM 13814]
          Length = 410

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 126/405 (31%), Gaps = 73/405 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+VIGGG AG  A+  AA  G    +          +     I G G+ ++    D    
Sbjct: 4   VVVIGGGAAGMFASIAAAGCGHQVVVY----EKNEKLGKKLYITGKGRCNITNACDMEGL 59

Query: 68  LMGRVADA----------AGIQFRVLNVKKGPAVRGPRTQADREL----YRLAMQREILS 113
                 +A             Q      + G   +  R   DR      +   + R +  
Sbjct: 60  FDAVRTNAKFLYSSFYGYTNQQVIDFFERIGVPTKIERG--DRVFPVSDHSSDVIRGLER 117

Query: 114 QEN-LDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
           + + L V   ++  V     +      I++ D   I     ++ TG              
Sbjct: 118 EMDRLGVKVHLRTAVKKVVAKDGHFEKIILGDQRQIHADACIVATGGLS---YQSTGSTG 174

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDG---KTIIWDKTE-KQFADERLIP 225
              R  +S  +++ +            K      L G   + +     + K+   +    
Sbjct: 175 DGFRFAESLGHTVTDCMPALVP--MECKEEWVPELQGLSLRNVNVTILDGKKKLYDDFGE 232

Query: 226 FSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF 285
             F    ++   I    +    +           +   +  I          ++ +++R 
Sbjct: 233 MLFTHYGVSGPLILSASSYVGKK---------LKAKELTLKIDLKPALSEEQLDHRVLRE 283

Query: 286 GERNG--------HQIFLEPEGLNTDVVYPNGIS-----TALPEEIQHQFIRTIPGL--- 329
            E N         H++F  P  L   ++  +GI        + +E +  F+R I GL   
Sbjct: 284 FEENQNRQFKNAVHKLF--PSKLIPVMIELSGIDPEKKVNVITKEERLGFVRLIKGLTCT 341

Query: 330 -------EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG 367
                   +  I + G  I+   ++P     T+E+K + GL  AG
Sbjct: 342 LTDLRDYNEAIITKGGIKIKE--VDPG----TMESKLVKGLHFAG 380


>gi|126667861|ref|ZP_01738827.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Marinobacter sp. ELB17]
 gi|126627677|gb|EAZ98308.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
          [Marinobacter sp. ELB17]
          Length = 411

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           YDVI++G G AG   AA A   G    +                + G G+ +
Sbjct: 22 HYDVIIVGAGAAGLMCAATAGYRGRKVLV----LDHANKAGKKILMSGGGRCN 70


>gi|311744872|ref|ZP_07718657.1| putative FAD dependent oxidoreductase [Algoriphagus sp. PR1]
 gi|126577374|gb|EAZ81594.1| putative FAD dependent oxidoreductase [Algoriphagus sp. PR1]
          Length = 370

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y+VI++GGG AG  A+ + AK G    LI  K
Sbjct: 3  KYEVIIVGGGLAGLVASFLLAKGGKKVLLIEKK 35


>gi|119470588|ref|ZP_01613291.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Alteromonadales bacterium TW-7]
 gi|119446289|gb|EAW27566.1| predicted oxidoreductase with FAD/NAD(P)-binding domain
           [Alteromonadales bacterium TW-7]
          Length = 394

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 124/439 (28%), Gaps = 105/439 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIG G AG   AA A   G    +                I G G+ +   E  A +
Sbjct: 5   DVIVIGAGAAGLMCAAQAGYRGRRVTV----LDMGKKPGRKILISGGGRCNFTNENAAPE 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +      +   F    + +           DR  + LA   + L Q   D    ++  
Sbjct: 61  NYLC-----SNPHFVKSCLSRYT-QHDFIELVDR--HGLAYHHKTLGQLFCDNSAQDIVN 112

Query: 127 FNTEKNIISSIVMQDNSMI--RCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFN 184
               +   + + +   S +     T    + T  +  +H   L + +G +          
Sbjct: 113 ILLTECEWAGVNIALRSEVINVQKTESGYSVTTEQETLHCESLVVASGGLTMP------- 165

Query: 185 SFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQ------- 237
                    G    G             K  +QF    L   + +     ++        
Sbjct: 166 -------KLGATPIGY------------KIAEQFGLNVLPTMAALVPFTLHQHDKERFEG 206

Query: 238 -----IECGITRTNLETHR--IIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNG 290
                I C +T  +  T +  I+  +   S      I S+   +       I    E + 
Sbjct: 207 LSGVSIPCEVTSEDGTTFKENILFTHRGLSGPAILQISSF---WRAGQAVTINLLPELDL 263

Query: 291 HQIFL--EPEGLNTDVVYPNGISTALPEEIQHQFIR--------TIPGLEKVNIIRPGYA 340
            Q             +   N ++T LP+    + +          I  L    I      
Sbjct: 264 KQRLADWRETQPQKSLK--NSLTTILPKRF-IEILHESNAIPDCNINQLTHSQIEDLA-- 318

Query: 341 IEYDYINPKELFP------------------------TLETKKISGLFLAGQINGTTGYE 376
              +YI+  ++ P                        T E KK  GL+  G++   TG+ 
Sbjct: 319 ---NYIHAWQIKPNGTEGYRTAEVTLGGVNTDELSSKTFEAKKSQGLYFIGEVTDVTGWL 375

Query: 377 E------AAAQGLVAGINS 389
                  A + G  AG  +
Sbjct: 376 GGYNFQYAWSCGFAAGQYA 394


>gi|91772939|ref|YP_565631.1| FAD dependent oxidoreductase [Methanococcoides burtonii DSM 6242]
 gi|91711954|gb|ABE51881.1| FAD dependent oxidoreductase [Methanococcoides burtonii DSM 6242]
          Length = 385

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIVIG   AG  AA  A++ G    L+
Sbjct: 4  DVIVIGASPAGLMAARNASRKGVKVLLL 31


>gi|1074157|pir||D64086 glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain B, anaerobic
           - Haemophilus influenzae (strain Rd KW20)
          Length = 442

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I  ++DV +IGGG AG   A    + G    +I +  + I   S +  +          E
Sbjct: 9   IAMNFDVAIIGGGLAGLTCAIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGE 68

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             A++ L   +              + PA       A++ L +      + ++ +LD+I 
Sbjct: 69  NRAVENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELHLDLI- 118

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                       ++ +     + +  ++V    G 
Sbjct: 119 ---GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 150


>gi|329116935|ref|ZP_08245652.1| glutathione-disulfide reductase [Streptococcus parauberis NCFD
          2020]
 gi|326907340|gb|EGE54254.1| glutathione-disulfide reductase [Streptococcus parauberis NCFD
          2020]
          Length = 450

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD IVIGGG AG  +A  AA  GA   LI
Sbjct: 2  KKYDYIVIGGGSAGIASANRAAIYGAKVLLI 32


>gi|314936359|ref|ZP_07843706.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis subsp.
          hominis C80]
 gi|313654978|gb|EFS18723.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis subsp.
          hominis C80]
          Length = 474

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++            G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV 60

Query: 56 GHLVREIDALD 66
             VR+     
Sbjct: 61 TRTVRQSSEFG 71


>gi|308511075|ref|XP_003117720.1| hypothetical protein CRE_00620 [Caenorhabditis remanei]
 gi|308238366|gb|EFO82318.1| hypothetical protein CRE_00620 [Caenorhabditis remanei]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++  YDV+V+G G  G   A    KLG  T L             N +    GK  + R 
Sbjct: 1  MSTDYDVVVVGAGIFGSCTAYNCQKLGLKTLL----LEQFELGHTNGS--SHGKSRITRY 54

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
                 +  V DA    F  L   +G  + 
Sbjct: 55 AHTEVEYVDLVGDAYEQIFE-LERVRGEKLW 84


>gi|320107714|ref|YP_004183304.1| Lycopene beta and epsilon cyclase [Terriglobus saanensis SP1PR4]
 gi|319926235|gb|ADV83310.1| Lycopene beta and epsilon cyclase [Terriglobus saanensis SP1PR4]
          Length = 369

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 60/220 (27%), Gaps = 46/220 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M++  YDV V+GGG AGC  A    +      +   + S   +      +       L R
Sbjct: 1   MLHPIYDVAVLGGGPAGCACALSLRQCWPHLTVAVVEASQYDTPRAGEILAPQAMPLLHR 60

Query: 61  E-IDALDGLMGRVA--------DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
             +DA       VA        D    +   L    G  +   R   DR L + A ++  
Sbjct: 61  LRVDATKDAQTLVAQSIALSWGDPTLSEHHHLFSAHGFGLHLDRRAFDRHLAQAAEKQ-- 118

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT---FLRGV--IHIGK 166
                                      +   +  R +     TGT    LRG   +    
Sbjct: 119 ------------------------GATLLQGTTFRAAH--RDTGTWTMDLRGAENLRSRF 152

Query: 167 LKIPAGRMGDSPSNSLFNSFM-KFDFDTGRLKTGTPARLD 205
           +    GR       +                   T  R++
Sbjct: 153 VVDATGRN---AVFARSQRVRSDLFDRLTAYSLTTQMRVE 189


>gi|299132901|ref|ZP_07026096.1| mercuric reductase [Afipia sp. 1NLS2]
 gi|298593038|gb|EFI53238.1| mercuric reductase [Afipia sp. 1NLS2]
          Length = 477

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          NR YD+ VIG G AG  AA  AA  GA  AL+
Sbjct: 13 NRHYDLAVIGAGSAGFSAAITAADQGARVALV 44


>gi|282856317|ref|ZP_06265597.1| dihydrolipoyl dehydrogenase [Pyramidobacter piscolens W5455]
 gi|282585820|gb|EFB91108.1| dihydrolipoyl dehydrogenase [Pyramidobacter piscolens W5455]
          Length = 451

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IV+GGG  G  AA +AA+ G   AL+
Sbjct: 2  YDLIVLGGGPGGTRAAELAARHGMQVALV 30


>gi|228476011|ref|ZP_04060719.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis SK119]
 gi|228269834|gb|EEK11314.1| dihydrolipoyl dehydrogenase [Staphylococcus hominis SK119]
          Length = 474

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++            G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV 60

Query: 56 GHLVREIDALD 66
             VR+     
Sbjct: 61 TRTVRQSSEFG 71


>gi|212633528|ref|YP_002310053.1| dehydrogenase [Shewanella piezotolerans WP3]
 gi|212555012|gb|ACJ27466.1| Dehydrogenase (flavoproteins) [Shewanella piezotolerans WP3]
          Length = 366

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVI++GGG AGC  A     LG +  L+
Sbjct: 1  MKPLYDVIIVGGGPAGCATAIALHNLGVNNTLV 33


>gi|192361810|ref|YP_001981060.1| cholesterol oxidase [Cellvibrio japonicus Ueda107]
 gi|190687975|gb|ACE85653.1| cholesterol oxidase [Cellvibrio japonicus Ueda107]
          Length = 1141

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +I + YD++VIG G+ G  AA+  A+ G S  L+
Sbjct: 10 LIKKHYDIVVIGSGYGGAIAASRLARAGKSVCLL 43


>gi|188585109|ref|YP_001916654.1| thioredoxin reductase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349796|gb|ACB84066.1| thioredoxin reductase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 409

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 43/156 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DV++IGGG AG  A   A++    TA++  K    G MS               E
Sbjct: 1   MSDVFDVLIIGGGPAGLTAGIYASRSKLKTAILEKKRKPGGQMS------------TTWE 48

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++   G      +A G      ++ K  +    +                      + ++
Sbjct: 49  LENYPGFK----EATG-----PDIAKSLSEHAEKFGC-------------------EFLK 80

Query: 122 GEVAGFNTE-KNIISSIVMQDNSMIRCSTVVLTTGT 156
           GEV   +      +  +  +        +V++ TG 
Sbjct: 81  GEVKEIDLHSNPKV--VTSKKGEEYHAKSVIMATGA 114


>gi|167755368|ref|ZP_02427495.1| hypothetical protein CLORAM_00882 [Clostridium ramosum DSM 1402]
 gi|167704307|gb|EDS18886.1| hypothetical protein CLORAM_00882 [Clostridium ramosum DSM 1402]
          Length = 666

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+++GGG AG EAA V+A  G    L 
Sbjct: 407 NVVIVGGGPAGLEAARVSALRGHKVTLF 434


>gi|90704623|emb|CAF31349.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni]
          Length = 663

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLANGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|22002553|gb|AAM82704.1| PhdD [Synechococcus elongatus PCC 7942]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           YDVIVIG G+ G +AA  A + G  TA++  +    G+     C P+   L     VRE
Sbjct: 6  DYDVIVIGAGYGGFDAAKHACEKGLKTAIVEAR-DLGGTCVNRGCVPSKALLAASGRVRE 64

Query: 62 IDALD 66
          I   D
Sbjct: 65 ITDTD 69


>gi|81300007|ref|YP_400215.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 7942]
 gi|81168888|gb|ABB57228.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 7942]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           YDVIVIG G+ G +AA  A + G  TA++  +    G+     C P+   L     VRE
Sbjct: 6  DYDVIVIGAGYGGFDAAKHACEKGLKTAIVEAR-DLGGTCVNRGCVPSKALLAASGRVRE 64

Query: 62 IDALD 66
          I   D
Sbjct: 65 ITDTD 69


>gi|56750361|ref|YP_171062.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 6301]
 gi|56685320|dbj|BAD78542.1| dihydrolipoamide dehydrogenase [Synechococcus elongatus PCC 6301]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           YDVIVIG G+ G +AA  A + G  TA++  +    G+     C P+   L     VRE
Sbjct: 6  DYDVIVIGAGYGGFDAAKHACEKGLKTAIVEAR-DLGGTCVNRGCVPSKALLAASGRVRE 64

Query: 62 IDALD 66
          I   D
Sbjct: 65 ITDTD 69


>gi|51894310|ref|YP_077001.1| succinate dehydrogenase flavoprotein subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857999|dbj|BAD42157.1| succinate dehydrogenase flavoprotein subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 593

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 80/250 (32%), Gaps = 34/250 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-- 64
           ++IV+GGG AG  A   AA+ G    LI+          C    G  G  +   E D+  
Sbjct: 4   NLIVVGGGLAGLMAVIKAAEAGFHVDLISLVPVKRSHSVCAQG-GINGAVNTKGEGDSPW 62

Query: 65  -------LDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----LYRL 105
                    G        +  + +AA     + +    P  R P    D       LY  
Sbjct: 63  IHFDDTIYGGDFLADQPPVKAMCEAAPGIIYLFDRMGVPFNRTPEGLIDFRRFGGTLYHR 122

Query: 106 AMQ------REILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
                    +++L   +  V + EV G     E    + +V+ +  ++ C+   L T  F
Sbjct: 123 TAFSGGSTGQQLLYALDEQVRRHEVDGKVTKWEGWDFTGLVLHEGRVVGCTAQNLRTMEF 182

Query: 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            R       +    G       +   NS +        +        +G+ I    T   
Sbjct: 183 -RAFKADAVIMATGGIGMIFGKS--TNSVINTGSAAAIVYQQGAWYANGEMIQVHPTAI- 238

Query: 218 FADERLIPFS 227
             D++L   S
Sbjct: 239 PGDDKLRLMS 248


>gi|323499230|ref|ZP_08104207.1| pyridine nucleotide-disulfide oxidoreductase [Vibrio sinaloensis
          DSM 21326]
 gi|323315618|gb|EGA68652.1| pyridine nucleotide-disulfide oxidoreductase [Vibrio sinaloensis
          DSM 21326]
          Length = 483

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I +  DV VIG G AG  AA   A+ GAS  +I
Sbjct: 5  IKKQVDVCVIGAGPAGMSAAVRCAEAGASVVVI 37


>gi|312128171|ref|YP_003993045.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311778190|gb|ADQ07676.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 456

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD+I+IGGG AG  AA  A+K G  T LI
Sbjct: 1  MQMKYDLIIIGGGPAGYLAAERASKGGLKTLLI 33


>gi|312871062|ref|ZP_07731164.1| flavocytochrome c [Lactobacillus iners LEAF 3008A-a]
 gi|311093390|gb|EFQ51732.1| flavocytochrome c [Lactobacillus iners LEAF 3008A-a]
          Length = 459

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 36/196 (18%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18  YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66  DGLMG--RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-- 121
           D +    +     G Q    ++        P   A  + + + +  E+     + + +  
Sbjct: 78  DSMTKFYQETLQGGGQLNDPDMLHFFVEHAPLAIAWLKDHNILL-NELTITGGMTIKRTH 136

Query: 122 ------------------------------GEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
                                          +V      +   + I +++  +I    V+
Sbjct: 137 RPASKEPIGNFLITNLLKEITKQHINVFNNAKVVELIHNEKDFA-IKLENGQLISAKVVI 195

Query: 152 LTTGTFLRGVIHIGKL 167
           L TG F      I K 
Sbjct: 196 LATGGFGASKEIIKKY 211


>gi|239833046|ref|ZP_04681375.1| dihydrolipoamide dehydrogenase [Ochrobactrum intermedium LMG 3301]
 gi|239825313|gb|EEQ96881.1| dihydrolipoamide dehydrogenase [Ochrobactrum intermedium LMG 3301]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           SYDV+VIG G  G  AA  AA+LG S A++  K  T G    N     +G       + A
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLSVAVVE-KRKTFGGTCLN-----IGCIPSKALLHA 55

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                  V   AG  F  L V+  P +   +  A ++    +    +         + ++
Sbjct: 56  -----SEVFAEAGHSFDTLGVEVTPKLNLGKMLAHKDATVKSNVTGVEF----LFKKNKI 106

Query: 125 AGFNTEKNII----SSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
             F     I+     S+  +D     I    +++ TG+ + G+
Sbjct: 107 TSFIGTGKIVAKGKVSVTAEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|254521371|ref|ZP_05133426.1| oxidoreductase protein [Stenotrophomonas sp. SKA14]
 gi|219718962|gb|EED37487.1| oxidoreductase protein [Stenotrophomonas sp. SKA14]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G+ G  AA   A  G    L+  +    G+   N     +G G  V E++   
Sbjct: 30  DVAVLGAGYTGLTAALELAARGQRVVLLEAQRIGWGASGRNGGQALVGYGCEVDELERQL 89

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           G             R L      AV+  RT+ DR 
Sbjct: 90  G---------RDDARRLFDWSRDAVQAMRTRIDRH 115


>gi|127514109|ref|YP_001095306.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Shewanella loihica PV-4]
 gi|126639404|gb|ABO25047.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Shewanella loihica PV-4]
          Length = 555

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  A + GAS A++
Sbjct: 84  TQTFDVVVVGAGASGVPAALSARENGASVAVL 115


>gi|110632488|ref|YP_672696.1| FAD dependent oxidoreductase [Mesorhizobium sp. BNC1]
 gi|110283472|gb|ABG61531.1| FAD dependent oxidoreductase [Chelativorans sp. BNC1]
          Length = 428

 Score = 41.1 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +  DV V+G G  G  AA   A+ G S  ++       G    N  +   G   +  E+
Sbjct: 28 EKRADVAVVGAGFTGLSAALHLARAGVSVVVLEGAEIGFGGSGRNVGLVNAGLWIMPDEV 87

Query: 63 DALDG 67
           A+ G
Sbjct: 88 PAILG 92


>gi|324326810|gb|ADY22070.1| sarcosine oxidase, alpha subunit [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|321470287|gb|EFX81264.1| hypothetical protein DAPPUDRAFT_242609 [Daphnia pulex]
          Length = 481

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 18/193 (9%)

Query: 406 SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLR--PDNADNR--LTPIGMKLGCIGERRQ 461
           +   + +  L S   ++ ++ F+   +YRI  +  PD    R  L+ +      + E   
Sbjct: 226 AAFDIPLYHLVSSTNVDIHQ-FSDETQYRIDFQFSPDAVQQREVLSSLA-DCATVTED-W 282

Query: 462 KRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYP-DFSIQNLFS 520
               +     +    +  S   +S  L S  +   Q G    A   ++     SI +  S
Sbjct: 283 FTQNRVKTNMDKSILMYVSSARSSSQLESLPL---QVGDNFLAPSLIARNLGVSIDSTLS 339

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS--LPALSN 578
           +    +      I +L+       Y  +        K   + L+  +FDY++  L  L N
Sbjct: 340 MTSQVKDVCRKAIFQLRRIGKVRKYLTKAAA-----KSLVQALVLSNFDYANALLFGLPN 394

Query: 579 ELKEKLSILKPFN 591
           EL E+L  ++  +
Sbjct: 395 ELVERLEKIQCSS 407


>gi|319953408|ref|YP_004164675.1| dihydrolipoyl dehydrogenase [Cellulophaga algicola DSM 14237]
 gi|319422068|gb|ADV49177.1| Dihydrolipoyl dehydrogenase [Cellulophaga algicola DSM 14237]
          Length = 449

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M N+ +DV VIGGG AG   A   AK G   A+
Sbjct: 1  MANKKFDVFVIGGGSAGQAVAKTCAKAGLHVAI 33


>gi|301620390|ref|XP_002939559.1| PREDICTED: squalene monooxygenase-like [Xenopus (Silurana)
           tropicalis]
          Length = 556

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           +V+++G G  G   A V A+ G   A+I         I      P     +  LG G  V
Sbjct: 107 EVVIVGAGVLGSALATVMARDGRKVAVIERDMKEPDRIVGELLQPGGYQVLKDLGLGDAV 166

Query: 60  REIDALDGLMGRVADAAGIQFRV-----LNVKKGPAVRGPRTQADRELYR----LAMQRE 110
             +DA   + G V      +  V     LN +K       + Q  R  +     + +++ 
Sbjct: 167 EGLDAHV-VHGYVVHDFESKAEVEIPYPLNEEK-------QLQCGRAFHHGRFIMGLRKL 218

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
             ++ N+  ++G V     E +I++ +        D  ++     V+  G F +  
Sbjct: 219 AQAESNVRFMEGTVTQLLEENDIVTGVQYREKETGDTKVLHAPLTVVADGVFSKFR 274


>gi|301062484|ref|ZP_07203130.1| putative NADH oxidase [delta proteobacterium NaphS2]
 gi|300443414|gb|EFK07533.1| putative NADH oxidase [delta proteobacterium NaphS2]
          Length = 650

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+VIGGG  G EAA  A+  G    L+       G +
Sbjct: 389 VLVIGGGPGGVEAALCASWRGHKVTLMEKNAELGGML 425


>gi|291243648|ref|XP_002741713.1| PREDICTED: monoamine oxidase-like [Saccoglossus kowalevskii]
          Length = 507

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 1  MINRSYDVIVIGGGHAGCEAAA-------------VAAKLGASTALITHKTSTIGSMSCN 47
          M N  +DVIVIG G +G  AA                 ++G  T   T   S +G     
Sbjct: 1  MANNKHDVIVIGAGLSGLSAAWLLHKENVDVVVLEARDRVGGRT--YTIHNSDVGYCDLG 58

Query: 48 PAIGGLGKGHLVR 60
           +  G  +  L R
Sbjct: 59 GSYAGPTQNRLFR 71


>gi|228915437|ref|ZP_04079027.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228844214|gb|EEM89273.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|228934110|ref|ZP_04096950.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228825553|gb|EEM71346.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|229012096|ref|ZP_04169275.1| Sarcosine oxidase alpha subunit [Bacillus mycoides DSM 2048]
 gi|228749184|gb|EEL99030.1| Sarcosine oxidase alpha subunit [Bacillus mycoides DSM 2048]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|229091844|ref|ZP_04223037.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-42]
 gi|228691506|gb|EEL45263.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-42]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|229103442|ref|ZP_04234124.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-28]
 gi|228679938|gb|EEL34133.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-28]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|229185054|ref|ZP_04312243.1| Sarcosine oxidase alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228598414|gb|EEK56045.1| Sarcosine oxidase alpha subunit [Bacillus cereus BGSC 6E1]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|229197012|ref|ZP_04323750.1| Sarcosine oxidase alpha subunit [Bacillus cereus m1293]
 gi|228586432|gb|EEK44512.1| Sarcosine oxidase alpha subunit [Bacillus cereus m1293]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|255956679|ref|XP_002569092.1| Pc21g21120 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590803|emb|CAP97009.1| Pc21g21120 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 382

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
            +DV VIG G AG  AA   +K G S  L+  +   IG
Sbjct: 2  EKFDVAVIGAGMAGITAARDLSKKGFSVVLLEAR-DRIG 39


>gi|206890760|ref|YP_002249173.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742698|gb|ACI21755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 666

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V+VIGGG AG  AA   A +G    L+  + S  G+MS
Sbjct: 144 VLVIGGGIAGMFAALDLANMGLKVYLVERQPSIGGNMS 181


>gi|187931515|ref|YP_001891499.1| L-aspartate oxidase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712424|gb|ACD30721.1| L-aspartate oxidase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 495

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 37/227 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKGHLV 59
           MI + ++V +IGGG AG  AA   A+     A +   K +   S      I  +      
Sbjct: 1   MIIKKHNVAIIGGGLAGVVAAIELAENNLDVAIIYDQKINHCASAYAQGGIAAIVSSDDS 60

Query: 60  REIDALDGLM--GRVADAAGIQFRVLNVKKGPA--------------------VRGPRTQ 97
            E    D  +  G++A    I   V N     A                    + G  +Q
Sbjct: 61  IEAHINDTYIASGKLAKLESITQVVTNSNAAIAWLEKHGVEFDKKENGQYSLHLEGGHSQ 120

Query: 98  A----DRELYRLAM----QREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SM 144
           A     ++    A+     + + S +N+ +     V     + +    +   DN    + 
Sbjct: 121 ARILHIKDYTGRAVITSLYKNLDSFKNISIYPEHNVIELIKKDDKCVGLYSHDNKYQVTK 180

Query: 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDF 191
                V+L  G    G+                 +  +       +F
Sbjct: 181 FITKKVILAAGG-ASGLYKYVTNATAGNGSAMIMAYDIGCQLENLEF 226


>gi|196042015|ref|ZP_03109301.1| sarcosine oxidase, alpha subunit [Bacillus cereus NVH0597-99]
 gi|301054361|ref|YP_003792572.1| sarcosine oxidase subunit alpha [Bacillus anthracis CI]
 gi|196027149|gb|EDX65770.1| sarcosine oxidase, alpha subunit [Bacillus cereus NVH0597-99]
 gi|300376530|gb|ADK05434.1| sarcosine oxidase, alpha subunit [Bacillus cereus biovar
          anthracis str. CI]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|167631963|ref|ZP_02390290.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0442]
 gi|170685201|ref|ZP_02876425.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0465]
 gi|254685401|ref|ZP_05149261.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          str. CNEVA-9066]
 gi|254722810|ref|ZP_05184598.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          str. A1055]
 gi|254742970|ref|ZP_05200655.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          str. Kruger B]
 gi|167532261|gb|EDR94897.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0442]
 gi|170670561|gb|EDT21300.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0465]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|218903961|ref|YP_002451795.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
          AH820]
 gi|228927889|ref|ZP_04090936.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228946451|ref|ZP_04108769.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229122386|ref|ZP_04251600.1| Sarcosine oxidase alpha subunit [Bacillus cereus 95/8201]
 gi|218535378|gb|ACK87776.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
          AH820]
 gi|228661235|gb|EEL16861.1| Sarcosine oxidase alpha subunit [Bacillus cereus 95/8201]
 gi|228813199|gb|EEM59502.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228831775|gb|EEM77365.1| Sarcosine oxidase alpha subunit [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|206973742|ref|ZP_03234660.1| putative sarcosine oxidase, alpha subunit [Bacillus cereus
          H3081.97]
 gi|217960280|ref|YP_002338840.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
          AH187]
 gi|222096338|ref|YP_002530395.1| sarcosine oxidase, alpha subunit [Bacillus cereus Q1]
 gi|229139476|ref|ZP_04268047.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206747898|gb|EDZ59287.1| putative sarcosine oxidase, alpha subunit [Bacillus cereus
          H3081.97]
 gi|217065839|gb|ACJ80089.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus
          AH187]
 gi|221240396|gb|ACM13106.1| sarcosine oxidase, alpha subunit [Bacillus cereus Q1]
 gi|228644023|gb|EEL00284.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|170722085|ref|YP_001749773.1| GMC oxidoreductase [Pseudomonas putida W619]
 gi|169760088|gb|ACA73404.1| GMC oxidoreductase [Pseudomonas putida W619]
          Length = 488

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV +IG G AG   A   A+ G S  L+
Sbjct: 11 LRKAYDVCIIGAGPAGITLALQLAQAGWSVVLL 43


>gi|157963183|ref|YP_001503217.1| flavocytochrome c [Shewanella pealeana ATCC 700345]
 gi|157848183|gb|ABV88682.1| flavocytochrome c [Shewanella pealeana ATCC 700345]
          Length = 519

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
            +   DVIV+G G AG  AA  A + GAS  +       +     N  I G    +    
Sbjct: 46  FDEVVDVIVVGSGFAGMSAALQAKEAGASVMV----IDKMPVFGGNSTINGGAMAVAGSP 101

Query: 58  LVREIDALDGLMGRVADA 75
           L ++    D +   VAD 
Sbjct: 102 LQKKEGIEDSVDVMVADM 119


>gi|118478191|ref|YP_895342.1| sarcosine oxidase, subunit alpha [Bacillus thuringiensis str. Al
          Hakam]
 gi|196043533|ref|ZP_03110771.1| sarcosine oxidase, alpha subunit [Bacillus cereus 03BB108]
 gi|225864813|ref|YP_002750191.1| sarcosine oxidase, alpha subunit [Bacillus cereus 03BB102]
 gi|300119314|ref|ZP_07056996.1| sarcosine oxidase, alpha subunit [Bacillus cereus SJ1]
 gi|118417416|gb|ABK85835.1| probable sarcosine oxidase, alpha subunit [Bacillus thuringiensis
          str. Al Hakam]
 gi|196025842|gb|EDX64511.1| sarcosine oxidase, alpha subunit [Bacillus cereus 03BB108]
 gi|225790818|gb|ACO31035.1| sarcosine oxidase, alpha subunit [Bacillus cereus 03BB102]
 gi|298723299|gb|EFI64059.1| sarcosine oxidase, alpha subunit [Bacillus cereus SJ1]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|116749144|ref|YP_845831.1| thioredoxin reductase [Syntrophobacter fumaroxidans MPOB]
 gi|116698208|gb|ABK17396.1| thioredoxin reductase [Syntrophobacter fumaroxidans MPOB]
          Length = 311

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +N  YD+ +IGGG AG  A   AA+      L+
Sbjct: 3  MNDIYDIAIIGGGPAGLTAGLYAARARLKVILL 35


>gi|86751113|ref|YP_487609.1| FAD dependent oxidoreductase [Rhodopseudomonas palustris HaA2]
 gi|86574141|gb|ABD08698.1| FAD dependent oxidoreductase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 83/301 (27%), Gaps = 54/301 (17%)

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVV--LTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
            EV          + +++     I   +V+     G    G+          G       
Sbjct: 253 QEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGL---------FGDQVQRAV 303

Query: 180 NSLFNSFMKFD-FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
             L              +       L   ++ + +   +  ++        ++       
Sbjct: 304 PPLAPKLRSLSAMTWSMVAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSE---PTVY 360

Query: 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN-----GHQI 293
            CG  R + +    + +  +   +   +    G R     E +I R  ER         +
Sbjct: 361 VCGQDRIDDDAR--LGDGGEEELLVLINAPPVGDRKPFD-EAEIARCAERTFDVLERCGL 417

Query: 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP 353
            +  +   T V  P   +   P      + R   G    +  RPG               
Sbjct: 418 RIRLQPDKTTVTTPADFNRLFPATGGALYGRASHGW-TASFERPGA-------------- 462

Query: 354 TLETKKISGLFLAG---------QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRT 404
              TK I GL+LAG          + G +G   AAA  LVA + +  +   L  +     
Sbjct: 463 --RTK-IPGLYLAGGSTHPGPGVPMAGLSGR--AAAASLVADLEA--ELQGLKPMLRPAA 515

Query: 405 D 405
            
Sbjct: 516 T 516


>gi|49185655|ref|YP_028907.1| sarcosine oxidase subunit alpha, C-terminal [Bacillus anthracis
          str. Sterne]
 gi|165868870|ref|ZP_02213530.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0488]
 gi|167637751|ref|ZP_02396030.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0193]
 gi|170704518|ref|ZP_02894984.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0389]
 gi|177649271|ref|ZP_02932273.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0174]
 gi|190565233|ref|ZP_03018153.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          Tsiankovskii-I]
 gi|227814349|ref|YP_002814358.1| sarcosine oxidase alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229603532|ref|YP_002867110.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          str. A0248]
 gi|254737858|ref|ZP_05195561.1| sarcosine oxidase alpha subunit [Bacillus anthracis str. Western
          North America USA6153]
 gi|254752173|ref|ZP_05204210.1| sarcosine oxidase alpha subunit [Bacillus anthracis str. Vollum]
 gi|254760691|ref|ZP_05212715.1| sarcosine oxidase alpha subunit [Bacillus anthracis str.
          Australia 94]
 gi|49179582|gb|AAT54958.1| sarcosine oxidase alpha subunit, C-terminal [Bacillus anthracis
          str. Sterne]
 gi|164715596|gb|EDR21113.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0488]
 gi|167514300|gb|EDR89667.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0193]
 gi|170130319|gb|EDS99180.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0389]
 gi|172084345|gb|EDT69403.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Bacillus anthracis str. A0174]
 gi|190563260|gb|EDV17225.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          Tsiankovskii-I]
 gi|227005650|gb|ACP15393.1| sarcosine oxidase alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229267940|gb|ACQ49577.1| pyridine nucleotide-disulphide oxidoreductase [Bacillus anthracis
          str. A0248]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|52142677|ref|YP_084153.1| sarcosine oxidase, alpha subunit [Bacillus cereus E33L]
 gi|51976146|gb|AAU17696.1| sarcosine oxidase, alpha subunit [Bacillus cereus E33L]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|51246258|ref|YP_066142.1| phytoene dehydrogenase [Desulfotalea psychrophila LSv54]
 gi|50877295|emb|CAG37135.1| related to phytoene dehydrogenase [Desulfotalea psychrophila
          LSv54]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++ +YD+IV+G G  G  +A   A+ G    L+ + 
Sbjct: 8  VSDNYDIIVVGSGLGGLTSANRLARCGHKVLLLEYH 43


>gi|126462382|ref|YP_001043496.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104046|gb|ABN76724.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC 17029]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G   A   A+LG + A++       I    G +     +     
Sbjct: 1   MPAKSFDMIVIGAGPGGYVCAIRGAQLGLNVAIVERENLGGICLNWGCIPTKAMLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL             V+   +G A +     A            ++ + 
Sbjct: 61  YHLMHRAKEF-GLKAEGI--GYDLGAVVKRSRGVAKQLSSGVA-----------HLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            + V+ G+       K  +S +     +  +   ++VL TG   R +
Sbjct: 107 RITVVMGDAT--LAGKGRVS-VKTDKGTEELEAKSIVLATGARAREL 150


>gi|65320131|ref|ZP_00393090.1| COG0446: Uncharacterized NAD(FAD)-dependent dehydrogenases
          [Bacillus anthracis str. A2012]
          Length = 80

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|314917226|gb|EFS81057.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL050PA1]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRV 213


>gi|313828931|gb|EFS66645.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL063PA2]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRV 213


>gi|313807024|gb|EFS45522.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL087PA2]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRV 213


>gi|313764848|gb|EFS36212.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL013PA1]
 gi|313814057|gb|EFS51771.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL025PA1]
 gi|313815591|gb|EFS53305.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL059PA1]
 gi|314916388|gb|EFS80219.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL005PA4]
 gi|314921603|gb|EFS85434.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL050PA3]
 gi|314930748|gb|EFS94579.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL067PA1]
 gi|314955132|gb|EFS99537.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL027PA1]
 gi|314959328|gb|EFT03430.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL002PA1]
 gi|314969219|gb|EFT13317.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL037PA1]
 gi|315099599|gb|EFT71575.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL059PA2]
 gi|315102169|gb|EFT74145.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL046PA1]
 gi|315109959|gb|EFT81935.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL030PA2]
 gi|327334723|gb|EGE76434.1| NADH dehydrogenase [Propionibacterium acnes HL097PA1]
 gi|327454421|gb|EGF01076.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL087PA3]
 gi|327456487|gb|EGF03142.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL083PA2]
 gi|328756180|gb|EGF69796.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL087PA1]
 gi|328758561|gb|EGF72177.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL025PA2]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRV 213


>gi|307298021|ref|ZP_07577825.1| HI0933 family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916107|gb|EFN46490.1| HI0933 family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 138

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          D+IV+G G AG  AA  A++ G    L+   
Sbjct: 9  DLIVVGAGTAGIHAAITASRRGLDVMLVERN 39


>gi|291336335|gb|ADD95895.1| hypothetical protein [uncultured marine bacterium
          MedDCM-OCT-S08-C1068]
          Length = 124

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YDV+V+G G +G  AA   ++ G  TA I+
Sbjct: 6  IIDHEYDVVVLGAGGSGLRAAVGLSEAGLKTACIS 40


>gi|289759996|ref|ZP_06519374.1| dehydrogenase [Mycobacterium tuberculosis T85]
 gi|289715560|gb|EFD79572.1| dehydrogenase [Mycobacterium tuberculosis T85]
 gi|326905666|gb|EGE52599.1| dehydrogenase [Mycobacterium tuberculosis W-148]
          Length = 515

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|289747671|ref|ZP_06507049.1| dehydrogenase [Mycobacterium tuberculosis 02_1987]
 gi|289688199|gb|EFD55687.1| dehydrogenase [Mycobacterium tuberculosis 02_1987]
          Length = 762

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD IVIG GH G  AA +  + G  TA +
Sbjct: 230 YDAIVIGAGHNGLTAAVLLQRAGLRTACL 258


>gi|295700133|ref|YP_003608026.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1002]
 gi|295439346|gb|ADG18515.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1002]
          Length = 424

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV VIGGG  G  AA   AK GA+ A++
Sbjct: 27 DVAVIGGGFTGLSAALALAKRGAAVAVL 54


>gi|260203036|ref|ZP_05770527.1| dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289572481|ref|ZP_06452708.1| dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289536912|gb|EFD41490.1| dehydrogenase [Mycobacterium tuberculosis K85]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|260184757|ref|ZP_05762231.1| dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289445430|ref|ZP_06435174.1| dehydrogenase [Mycobacterium tuberculosis CPHL_A]
 gi|289418388|gb|EFD15589.1| dehydrogenase [Mycobacterium tuberculosis CPHL_A]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|253800877|ref|YP_003033879.1| dehydrogenase [Mycobacterium tuberculosis KZN 1435]
 gi|253322381|gb|ACT26984.1| dehydrogenase [Mycobacterium tuberculosis KZN 1435]
          Length = 541

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 9  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 37


>gi|229167338|ref|ZP_04295076.1| Sarcosine oxidase alpha subunit [Bacillus cereus AH621]
 gi|228615900|gb|EEK72987.1| Sarcosine oxidase alpha subunit [Bacillus cereus AH621]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|215448176|ref|ZP_03434928.1| dehydrogenase [Mycobacterium tuberculosis T85]
 gi|294993041|ref|ZP_06798732.1| dehydrogenase [Mycobacterium tuberculosis 210]
          Length = 741

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD IVIG GH G  AA +  + G  TA +
Sbjct: 230 YDAIVIGAGHNGLTAAVLLQRAGLRTACL 258


>gi|215425089|ref|ZP_03423008.1| dehydrogenase [Mycobacterium tuberculosis T92]
 gi|215432810|ref|ZP_03430729.1| dehydrogenase [Mycobacterium tuberculosis EAS054]
 gi|219559926|ref|ZP_03539002.1| dehydrogenase [Mycobacterium tuberculosis T17]
 gi|260198881|ref|ZP_05766372.1| dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289441267|ref|ZP_06431011.1| dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289572083|ref|ZP_06452310.1| dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289748360|ref|ZP_06507738.1| dehydrogenase [Mycobacterium tuberculosis T92]
 gi|289755962|ref|ZP_06515340.1| dehydrogenase [Mycobacterium tuberculosis EAS054]
 gi|289414186|gb|EFD11426.1| dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289545837|gb|EFD49485.1| dehydrogenase [Mycobacterium tuberculosis T17]
 gi|289688947|gb|EFD56376.1| dehydrogenase [Mycobacterium tuberculosis T92]
 gi|289696549|gb|EFD63978.1| dehydrogenase [Mycobacterium tuberculosis EAS054]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|167461361|ref|ZP_02326450.1| hypothetical protein Plarl_02163 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 55

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D+ VI  G AG  AA  AAK G  T L+
Sbjct: 2  FDIAVIEAGPAGGSAALFAAKAGKKTLLL 30


>gi|163857804|ref|YP_001632102.1| putative oxidoreductase [Bordetella petrii DSM 12804]
 gi|163261532|emb|CAP43834.1| putative oxidoreductase [Bordetella petrii]
          Length = 429

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          D+ ++GGG AG  AA   A+ G    L+  +    G+   N
Sbjct: 31 DICIVGGGLAGLTAALELARRGRQVVLLEARRVGWGASGRN 71


>gi|189218086|ref|YP_001938728.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Methylacidiphilum
          infernorum V4]
 gi|161075839|gb|ABX56667.1| 2-oxoglutarate dehydrogenase E3 component [Methylacidiphilum
          infernorum V4]
 gi|189184944|gb|ACD82129.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Methylacidiphilum
          infernorum V4]
          Length = 466

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLGKGH 57
           ++DV+VIG G  G  AA  AA+LG   A++    +       +G +     +      H
Sbjct: 2  NNFDVVVIGSGPGGYVAAIRAAQLGLKVAIVEKDKTLGGTCLNVGCIPSKALLSLSEYFH 61

Query: 58 LVREIDALDGLMGR 71
            R+  A +GLM  
Sbjct: 62 FARQKFASNGLMVE 75


>gi|154249540|ref|YP_001410365.1| thioredoxin reductase [Fervidobacterium nodosum Rt17-B1]
 gi|154153476|gb|ABS60708.1| thioredoxin reductase [Fervidobacterium nodosum Rt17-B1]
          Length = 316

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YDVI+IG G AG  AA  A + G +  +I       G       +     G +  E
Sbjct: 13 LKEYYDVIIIGAGPAGLTAAIYARRAGLTALVIEKAIE--GGAVTQTHVVENWPGEISIE 70

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
            AL       A   G +      +K
Sbjct: 71 GQALGQKFADHAKHFGAEIHYAFAQK 96


>gi|153012130|ref|YP_001373340.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
 gi|151564018|gb|ABS17511.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
          Length = 445

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          I R  DV ++G G+AG  AA   A+ G    +   +    G+ S N   
Sbjct: 23 IERDCDVAIVGAGYAGLCAALHLARAGRKVQVFEREQLGFGASSRNGGF 71


>gi|50841641|ref|YP_054868.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
 gi|289424391|ref|ZP_06426174.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes SK187]
 gi|289427552|ref|ZP_06429265.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes J165]
 gi|295129692|ref|YP_003580355.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes SK137]
 gi|50839243|gb|AAT81910.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
 gi|289155088|gb|EFD03770.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes SK187]
 gi|289159482|gb|EFD07673.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes J165]
 gi|291375104|gb|ADD98958.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes SK137]
 gi|313771303|gb|EFS37269.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL074PA1]
 gi|313792734|gb|EFS40815.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL110PA1]
 gi|313803398|gb|EFS44580.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL110PA2]
 gi|313811668|gb|EFS49382.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL083PA1]
 gi|313817809|gb|EFS55523.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL046PA2]
 gi|313821366|gb|EFS59080.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL036PA1]
 gi|313824694|gb|EFS62408.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL036PA2]
 gi|313826358|gb|EFS64072.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL063PA1]
 gi|313832135|gb|EFS69849.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL007PA1]
 gi|313832936|gb|EFS70650.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL056PA1]
 gi|313839796|gb|EFS77510.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL086PA1]
 gi|314926400|gb|EFS90231.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL036PA3]
 gi|314961500|gb|EFT05601.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL002PA2]
 gi|314964108|gb|EFT08208.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL082PA1]
 gi|314975372|gb|EFT19467.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL053PA1]
 gi|314977423|gb|EFT21518.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL045PA1]
 gi|314980086|gb|EFT24180.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL072PA2]
 gi|314985236|gb|EFT29328.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL005PA1]
 gi|314986940|gb|EFT31032.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL005PA2]
 gi|314990566|gb|EFT34657.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL005PA3]
 gi|315078786|gb|EFT50808.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL053PA2]
 gi|315081739|gb|EFT53715.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL078PA1]
 gi|315082945|gb|EFT54921.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL027PA2]
 gi|315086463|gb|EFT58439.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL002PA3]
 gi|315088179|gb|EFT60155.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL072PA1]
 gi|315096990|gb|EFT68966.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL038PA1]
 gi|315107555|gb|EFT79531.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL030PA1]
 gi|327332670|gb|EGE74405.1| NADH dehydrogenase [Propionibacterium acnes HL096PA2]
 gi|327333840|gb|EGE75557.1| NADH dehydrogenase [Propionibacterium acnes HL096PA3]
 gi|327444692|gb|EGE91346.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL013PA2]
 gi|327446545|gb|EGE93199.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL043PA2]
 gi|327449011|gb|EGE95665.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL043PA1]
 gi|327457243|gb|EGF03898.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL092PA1]
 gi|328757809|gb|EGF71425.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL020PA1]
 gi|328759641|gb|EGF73240.1| NADH dehydrogenase [Propionibacterium acnes HL099PA1]
 gi|332674554|gb|AEE71370.1| NADH dehydrogenase-like protein YumB [Propionibacterium acnes 266]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPDVSTDRV 213


>gi|21227206|ref|NP_633128.1| oxidoreductase [Methanosarcina mazei Go1]
 gi|20905546|gb|AAM30800.1| oxidoreductase [Methanosarcina mazei Go1]
          Length = 385

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIG   AG  AA  A + G    L+  K           +     KG L R      
Sbjct: 4   DIIVIGASPAGLMAARNACEKGVDVLLLERKKEIGNPPHPANSFF---KGMLDR------ 54

Query: 67  GLMGRVADAAGI-----QFRVLNVK------KGPAVRGPRTQADRELYRLAMQREILSQE 115
              G  ADA+ +       ++++ +      + P     +T+ DR  Y     +      
Sbjct: 55  --CGEKADASYVVHHLKGMKIISPEGHEVIVETPGYSIDKTKFDR-FYAEKAAKI----- 106

Query: 116 NLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG--TFLRGVIHIGKLKIPAG 172
            +D+  G E      E    + +        R   V+++ G  + +  ++ +  +K P  
Sbjct: 107 GVDIRTGIEAKDIWREGKEFA-VSTSAGR-FRSKLVIISDGINSKMASLLGLKTMKYPED 164

Query: 173 RMGDSPSNSLFNSF 186
               +  +   +  
Sbjct: 165 IAWGTELDIRASGL 178


>gi|31795003|ref|NP_857496.1| putative dehydrogenase [Mycobacterium bovis AF2122/97]
 gi|121639747|ref|YP_979971.1| putative dehydrogenase [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|224992242|ref|YP_002646932.1| putative dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31620601|emb|CAD96045.1| PUTATIVE DEHYDROGENASE [Mycobacterium bovis AF2122/97]
 gi|121495395|emb|CAL73882.1| Putative dehydrogenase [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|224775358|dbj|BAH28164.1| putative dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|146279169|ref|YP_001169328.1| hypothetical protein Rsph17025_3139 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145557410|gb|ABP72023.1| HI0933 family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 402

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLGKGHLVR 60
          D +VIGGG AG  AA   A+ G  T +   K S        G    N          L R
Sbjct: 2  DALVIGGGPAGLMAAEELARAGRRTVICEAKPSVARKLLMAGKSGLNITKDEPAASFLAR 61

Query: 61 EIDALDGLMGRVAD 74
            +A D L   +AD
Sbjct: 62 YEEAADWLAPMLAD 75


>gi|15610965|ref|NP_218346.1| dehydrogenase [Mycobacterium tuberculosis H37Rv]
 gi|15843453|ref|NP_338490.1| oxidoreductase, putative [Mycobacterium tuberculosis CDC1551]
 gi|148663697|ref|YP_001285220.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148825036|ref|YP_001289790.1| dehydrogenase [Mycobacterium tuberculosis F11]
 gi|167969944|ref|ZP_02552221.1| hypothetical dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|215405885|ref|ZP_03418066.1| dehydrogenase [Mycobacterium tuberculosis 02_1987]
 gi|215413756|ref|ZP_03422424.1| dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|218755617|ref|ZP_03534413.1| dehydrogenase [Mycobacterium tuberculosis GM 1503]
 gi|254233318|ref|ZP_04926644.1| hypothetical protein TBCG_03755 [Mycobacterium tuberculosis C]
 gi|254366373|ref|ZP_04982417.1| hypothetical dehydrogenase [Mycobacterium tuberculosis str.
          Haarlem]
 gi|289556096|ref|ZP_06445306.1| dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289764015|ref|ZP_06523393.1| dehydrogenase [Mycobacterium tuberculosis GM 1503]
 gi|297636512|ref|ZP_06954292.1| dehydrogenase [Mycobacterium tuberculosis KZN 4207]
 gi|297733507|ref|ZP_06962625.1| dehydrogenase [Mycobacterium tuberculosis KZN R506]
 gi|298527304|ref|ZP_07014713.1| hypothetical dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|306778192|ref|ZP_07416529.1| dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|306778722|ref|ZP_07417059.1| dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|306786749|ref|ZP_07425071.1| dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|306786879|ref|ZP_07425201.1| dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|306791434|ref|ZP_07429736.1| dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|306795499|ref|ZP_07433801.1| dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|306801474|ref|ZP_07438142.1| dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|306805681|ref|ZP_07442349.1| dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|306970076|ref|ZP_07482737.1| dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|306974309|ref|ZP_07486970.1| dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|307082016|ref|ZP_07491186.1| dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|307086629|ref|ZP_07495742.1| dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|313660838|ref|ZP_07817718.1| dehydrogenase [Mycobacterium tuberculosis KZN V2475]
 gi|3261810|emb|CAB10023.1| PROBABLE DEHYDROGENASE [Mycobacterium tuberculosis H37Rv]
 gi|13883824|gb|AAK48304.1| oxidoreductase, putative [Mycobacterium tuberculosis CDC1551]
 gi|124603111|gb|EAY61386.1| hypothetical protein TBCG_03755 [Mycobacterium tuberculosis C]
 gi|134151885|gb|EBA43930.1| hypothetical dehydrogenase [Mycobacterium tuberculosis str.
          Haarlem]
 gi|148507849|gb|ABQ75658.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
 gi|148723563|gb|ABR08188.1| hypothetical dehydrogenase [Mycobacterium tuberculosis F11]
 gi|289440728|gb|EFD23221.1| dehydrogenase [Mycobacterium tuberculosis KZN 605]
 gi|289711521|gb|EFD75537.1| dehydrogenase [Mycobacterium tuberculosis GM 1503]
 gi|298497098|gb|EFI32392.1| hypothetical dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|308213525|gb|EFO72924.1| dehydrogenase [Mycobacterium tuberculosis SUMu001]
 gi|308328281|gb|EFP17132.1| dehydrogenase [Mycobacterium tuberculosis SUMu002]
 gi|308328683|gb|EFP17534.1| dehydrogenase [Mycobacterium tuberculosis SUMu003]
 gi|308336429|gb|EFP25280.1| dehydrogenase [Mycobacterium tuberculosis SUMu004]
 gi|308340023|gb|EFP28874.1| dehydrogenase [Mycobacterium tuberculosis SUMu005]
 gi|308344021|gb|EFP32872.1| dehydrogenase [Mycobacterium tuberculosis SUMu006]
 gi|308347807|gb|EFP36658.1| dehydrogenase [Mycobacterium tuberculosis SUMu007]
 gi|308351743|gb|EFP40594.1| dehydrogenase [Mycobacterium tuberculosis SUMu008]
 gi|308352432|gb|EFP41283.1| dehydrogenase [Mycobacterium tuberculosis SUMu009]
 gi|308356382|gb|EFP45233.1| dehydrogenase [Mycobacterium tuberculosis SUMu010]
 gi|308360339|gb|EFP49190.1| dehydrogenase [Mycobacterium tuberculosis SUMu011]
 gi|308363972|gb|EFP52823.1| dehydrogenase [Mycobacterium tuberculosis SUMu012]
 gi|323717496|gb|EGB26699.1| dehydrogenase [Mycobacterium tuberculosis CDC1551A]
 gi|328460605|gb|AEB06028.1| dehydrogenase [Mycobacterium tuberculosis KZN 4207]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IVIG GH G  AA +  + G  TA +
Sbjct: 4  YDAIVIGAGHNGLTAAVLLQRAGLRTACL 32


>gi|298250740|ref|ZP_06974544.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
 gi|297548744|gb|EFH82611.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
          Length = 438

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +  DV+VIGGG AG   A   A+ G S  L    T+
Sbjct: 6  KQTDVVVIGGGLAGLSTACYLARDGLSVTLFEKSTN 41


>gi|271502599|ref|YP_003335625.1| hypothetical protein Dd586_4093 [Dickeya dadantii Ech586]
 gi|270346154|gb|ACZ78919.1| HI0933 family protein [Dickeya dadantii Ech586]
          Length = 400

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVI+IG G AG   AA A + G    L+
Sbjct: 2  EQFDVIIIGAGAAGLFCAAQAGQRGLRVLLV 32


>gi|290579644|ref|YP_003484036.1| putative dihydrolipoamide dehydrogenase [Streptococcus mutans
           NN2025]
 gi|254996543|dbj|BAH87144.1| putative dihydrolipoamide dehydrogenase [Streptococcus mutans
           NN2025]
          Length = 581

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 120 LADDEYDMIVVGGGPAGYYAAIRGAQLGGKVAIV 153


>gi|253575350|ref|ZP_04852688.1| succinate dehydrogenase subunit A [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845347|gb|EES73357.1| succinate dehydrogenase subunit A [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 581

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 54/170 (31%), Gaps = 36/170 (21%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE-- 61
           IV+GGG AG  A   +A+ G    L +          C     N A+   G+G    E  
Sbjct: 7   IVVGGGLAGLMATIKSAEAGVPVQLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEHF 66

Query: 62  -IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQA 98
                 G           M   A       D  G+ F       L+ ++    +  RT  
Sbjct: 67  DDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKHHRTAF 126

Query: 99  DRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIR 146
                   +   +  Q    V + E AG  T  E     S+V+ D  + R
Sbjct: 127 AGATTGQQLLYALDEQ----VRRHEAAGLVTKYENWEFLSVVLDDEGVCR 172


>gi|229592680|ref|YP_002874799.1| putative GMC oxidoreductase [Pseudomonas fluorescens SBW25]
 gi|229364546|emb|CAY52417.1| putative putative GMC oxidoreductase [Pseudomonas fluorescens
          SBW25]
          Length = 593

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + +++D IV+GGG AGC AA   ++             T     C    GG G+  LVR
Sbjct: 41 MKKTFDFIVVGGGSAGCVAAGRLSE----------DPDT---SVCLLEAGGEGRSSLVR 86


>gi|229097354|ref|ZP_04228316.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-29]
 gi|229116348|ref|ZP_04245738.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock1-3]
 gi|228667180|gb|EEL22632.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock1-3]
 gi|228686165|gb|EEL40081.1| Sarcosine oxidase alpha subunit [Bacillus cereus Rock3-29]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|196031988|ref|ZP_03099402.1| sarcosine oxidase alpha subunit [Bacillus cereus W]
 gi|195994739|gb|EDX58693.1| sarcosine oxidase alpha subunit [Bacillus cereus W]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|24378648|ref|NP_720603.1| putative dihydrolipoamide dehydrogenase [Streptococcus mutans
           UA159]
 gi|24376507|gb|AAN57909.1|AE014864_7 putative dihydrolipoamide dehydrogenase [Streptococcus mutans
           UA159]
          Length = 581

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 120 LADDEYDMIVVGGGPAGYYAAIRGAQLGGKVAIV 153


>gi|21243131|ref|NP_642713.1| hypothetical protein XAC2397 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108650|gb|AAM37249.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 393

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 15/174 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                  +                +  PA      Q     + +A   + L Q   D+  
Sbjct: 57  GTTPGNFISANRHFCKSAL----ARYSPADFVEMVQ----RHAIAYHEKELGQLFCDISS 108

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRC---STVVLTTGTFLRGVIHIGKLKIPAG 172
            ++     ++   +   ++    +      +      T   GV     +    G
Sbjct: 109 KQIVRMLLDECDAAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVATGG 162


>gi|16803095|ref|NP_464580.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes EGD-e]
 gi|47096144|ref|ZP_00233744.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes str. 1/2a
          F6854]
 gi|116872449|ref|YP_849230.1| dihydrolipoamide dehydrogenase [Listeria welshimeri serovar 6b
          str. SLCC5334]
 gi|224500302|ref|ZP_03668651.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes Finland
          1988]
 gi|224502631|ref|ZP_03670938.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          R2-561]
 gi|254828432|ref|ZP_05233119.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          N3-165]
 gi|254830176|ref|ZP_05234831.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 10403S]
 gi|254898772|ref|ZP_05258696.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes J0161]
 gi|254911739|ref|ZP_05261751.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes J2818]
 gi|254936065|ref|ZP_05267762.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes F6900]
 gi|284801387|ref|YP_003413252.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5578]
 gi|284994529|ref|YP_003416297.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5923]
 gi|315281788|ref|ZP_07870343.1| dihydrolipoyl dehydrogenase [Listeria marthii FSL S4-120]
 gi|16410457|emb|CAC99133.1| PdhD [Listeria monocytogenes EGD-e]
 gi|47015493|gb|EAL06426.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes str. 1/2a
          F6854]
 gi|116741327|emb|CAK20449.1| dihydrolipoamide dehydrogenase, E3 subunit of pyruvate
          dehydrogenase [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|258600828|gb|EEW14153.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          N3-165]
 gi|258608655|gb|EEW21263.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes F6900]
 gi|284056949|gb|ADB67890.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5578]
 gi|284059996|gb|ADB70935.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5923]
 gi|293589690|gb|EFF98024.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes J2818]
 gi|313614565|gb|EFR88154.1| dihydrolipoyl dehydrogenase [Listeria marthii FSL S4-120]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|326803386|ref|YP_004321204.1| glutathione-disulfide reductase [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650653|gb|AEA00836.1| glutathione-disulfide reductase [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 450

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +D IVIGGG AG  +A  AA+ GA T +I
Sbjct: 2  ERFDYIVIGGGSAGIASANRAAEYGAKTLII 32


>gi|326492117|dbj|BAJ98283.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326496963|dbj|BAJ98508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 14/161 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+++G G AG   A    + G  + ++                  +   +  R +DAL 
Sbjct: 12  DVVIVGAGLAGLGVALGLHRKGVRSVVLESSP-----ALRTSGFAFMTWTNAFRALDALG 66

Query: 67  -GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G   R         RV++   G  VR    +   +L     +     Q N+ ++Q    
Sbjct: 67  VGDKMRSHHLQVQGVRVMSPTTGEVVRELDLRVQGKLGPHEARCV---QRNV-LLQALEE 122

Query: 126 GFNTE----KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
              T      + I SI   D       T+ L  G+ LR  +
Sbjct: 123 ELPTGTIRYSSRIVSIDDDDEDGGDGKTLHLADGSTLRAKV 163


>gi|309776815|ref|ZP_07671789.1| hypothetical protein HMPREF0983_02392 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915563|gb|EFP61329.1| hypothetical protein HMPREF0983_02392 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 420

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 39/161 (24%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIV+GGG AG  +A  A K GA   L                        ++     
Sbjct: 2   KYDVIVVGGGPAGLASALEAWKQGAKHIL------------------------ILERDQE 37

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L G++ +                GP             Y       +       ++   V
Sbjct: 38  LGGILNQCIHNGFGLHHFKEELTGP------------EYAGKFIEMLKDTNVEVLLDTMV 85

Query: 125 AGFNTEKNIISSIVMQDNSM-IRCSTVVLTTG--TFLRGVI 162
              + E   I ++  +   M +    +VL  G     RG I
Sbjct: 86  LDIDEENRCIHAMNKKQGYMQLEAKAIVLNMGCRERTRGAI 126


>gi|294671253|ref|ZP_06736106.1| hypothetical protein NEIELOOT_02963 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291307081|gb|EFE48324.1| hypothetical protein NEIELOOT_02963 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 151

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           YDV VIG G  G  AA  AA+LG  T  I    + +      PA+GG 
Sbjct: 3  QYDVAVIGAGPGGYVAAIRAAQLGFKTVCID---AGVNKADDAPALGGT 48


>gi|317051581|ref|YP_004112697.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfurispirillum indicum
           S5]
 gi|316946665|gb|ADU66141.1| NADH:flavin oxidoreductase/NADH oxidase [Desulfurispirillum indicum
           S5]
          Length = 995

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V GGG AG  AA  A + G    L 
Sbjct: 709 VLVAGGGPAGMSAALAAGRRGHRVLLC 735


>gi|284053481|ref|ZP_06383691.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Arthrospira platensis str. Paraca]
          Length = 139

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
            YD+++IGG  AG +AA  A+K+    AL+           IG+   +P +        +
Sbjct: 30  DYDIVIIGGTLAGRKAAIKASKMQGRVALLEPDPPPVPGQIIGANRHHPLLQIAKVAKQM 89

Query: 60  REIDALDGLMGRVADA 75
           R++    G+    AD 
Sbjct: 90  RQVSQF-GIGWETADR 104


>gi|229173490|ref|ZP_04301033.1| Sarcosine oxidase alpha subunit [Bacillus cereus MM3]
 gi|228609872|gb|EEK67151.1| Sarcosine oxidase alpha subunit [Bacillus cereus MM3]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|254487640|ref|ZP_05100845.1| oxidoreductase, FAD/FMN-binding family [Roseobacter sp. GAI101]
 gi|214044509|gb|EEB85147.1| oxidoreductase, FAD/FMN-binding family [Roseobacter sp. GAI101]
          Length = 681

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V++IG G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIIGAGPAGLEAARVAAERGHDVVVFEAQAD 420


>gi|254455518|ref|ZP_05068947.1| succinate dehydrogenase, flavoprotein subunit [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207082520|gb|EDZ59946.1| succinate dehydrogenase, flavoprotein subunit [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 591

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YDV+V+G G +G  AA   ++ G  TA I+
Sbjct: 6  IIDHEYDVVVLGAGGSGLRAAVGLSEAGLKTACIS 40


>gi|171184900|ref|YP_001793819.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Thermoproteus neutrophilus V24Sta]
 gi|170934112|gb|ACB39373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Thermoproteus neutrophilus V24Sta]
          Length = 442

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 65/236 (27%), Gaps = 46/236 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL-------ITHKTSTIGSMSCNPAIGGLGKGHLV 59
           DV V+G G+ G E A V A++G    L       +        S      +G   +  L 
Sbjct: 144 DVAVVGAGYIGVEMADVLAQMGKRVVLIDGSPRPLAKSLDPDMSAVVARYMGERVELRLG 203

Query: 60  REIDALDGLMGRVAD---------------AAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
             +  + G  GR                  A G++  V    K  A  G     +   Y 
Sbjct: 204 ERLVRIGGEGGRARYVETDGGRYPADVVFLATGVRPNVDLALKAGARLGQTGAVEVNEYM 263

Query: 105 LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                 + +                 ++ ++   +     I  + +    GT        
Sbjct: 264 ETAAPAVYA----------AGDVAEARHAVTGEPVWIPLAIYANKMGCVAGTNAG----- 308

Query: 165 GKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLK-TGTPAR---LDGKTIIWDKTEK 216
                   R    P  +  +     D   G    T   AR   + G +I    T+K
Sbjct: 309 -----LGRRAISFPPVAGASVTKFLDMYIGSTGLTEEEARRRGIYGNSISISATDK 359


>gi|163731374|ref|ZP_02138821.1| dihydrolipoamide dehydrogenase [Roseobacter litoralis Och 149]
 gi|161394828|gb|EDQ19150.1| dihydrolipoamide dehydrogenase [Roseobacter litoralis Och 149]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 23/165 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M ++S+D+IVIG G  G  AA   A+LG S A+I       I    G +     +     
Sbjct: 1   MASKSFDLIVIGAGPGGYVAAIRGAQLGMSVAIIEREHLGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL++      GL     D       V+   +  A +                  ++ + 
Sbjct: 61  FHLMQRAKEF-GLKADNVD--YDLDAVVKRSRKVAGQLSGG-----------IGHLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLR 159
            + V  GE       K  +S +     +  +    +VL TG   R
Sbjct: 107 KVTVFMGEAK--LAGKGKVS-VKTDKGAEDLTAKNIVLATGARAR 148


>gi|49477876|ref|YP_036924.1| sarcosine oxidase subunit alpha [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49329432|gb|AAT60078.1| probable sarcosine oxidase, alpha subunit [Bacillus thuringiensis
          serovar konkukian str. 97-27]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|330810558|ref|YP_004355020.1| hypothetical protein PSEBR_a3670 [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378666|gb|AEA70016.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 528

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVI++G G AG  AA    K G +  ++
Sbjct: 1  MKPEFDVIIVGSGPAGTSAAYPLVKAGLNVLMV 33


>gi|304314487|ref|YP_003849634.1| dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587946|gb|ADL58321.1| predicted dehydrogenase [Methanothermobacter marburgensis str.
          Marburg]
          Length = 394

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+VIG G AG  AA  AA  GAS  LI  K+       C        +G  V  +++L 
Sbjct: 6  DVLVIGAGPAGSTAAKHAAMGGASVLLIDKKSEIGAPKRC-------AEGVSVGGLESLG 58


>gi|291562730|emb|CBL41546.1| thioredoxin-disulfide reductase [butyrate-producing bacterium
           SS3/4]
          Length = 326

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 67/216 (31%), Gaps = 31/216 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTA------------LITHKTSTIGSMSCNPA 49
           + + YD+I+IG G AG  AA  A +    T             L T++      +   P 
Sbjct: 1   MEQIYDLIIIGSGPAGLGAAIYAKRAELKTLVIEREMMSGGQVLTTYEVDNYAGL---PG 57

Query: 50  IGGLGKGHLVREID-------ALDGLMGRVADAAGIQFRVLNVKKGPAVRGP--RTQADR 100
           IGG   G   RE         A D ++         +  VL   +  A   P  R    +
Sbjct: 58  IGGFDLGMKFREHADKLGVEFAKDTVLKIETADLADENEVLEAAEAGAGHPPVIRQVVGK 117

Query: 101 ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCS--TVVLTTGTFL 158
           +  RLA    I S  +     G           +S     D +  R     VV      L
Sbjct: 118 KETRLAKAVIIASGAH-HRKLGIPGEAELTGKGVSYCATCDGAFFRKKITAVVGGGDVAL 176

Query: 159 RGVIH----IGKLKIPAGRMGDSPSNSLFNSFMKFD 190
              I       K+ +   R     + SL    M+  
Sbjct: 177 EDAIFLARLCEKVYVIHRRDEFRGAKSLQKRLMELP 212


>gi|301119851|ref|XP_002907653.1| oxidoreductase, putative [Phytophthora infestans T30-4]
 gi|262106165|gb|EEY64217.1| oxidoreductase, putative [Phytophthora infestans T30-4]
          Length = 165

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ + +D IV+GGGH G  AA+  AK G S  ++
Sbjct: 7  LLRKKWDAIVVGGGHNGLVAASYLAKAGKSVCVL 40


>gi|260206092|ref|ZP_05773583.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis K85]
          Length = 281

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 80  DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 117


>gi|260187797|ref|ZP_05765271.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis CPHL_A]
          Length = 279

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 78  DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 115


>gi|254561955|ref|YP_003069050.1| dihydrolipoamide dehydrogenase, E3 Component of Pyruvate
          dehydrogenase multienzyme complex [Methylobacterium
          extorquens DM4]
 gi|254269233|emb|CAX25199.1| dihydrolipoamide dehydrogenase, E3 Component of Pyruvate
          dehydrogenase multienzyme complex [Methylobacterium
          extorquens DM4]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IG G  G  AA  +A+LG  TA++
Sbjct: 1  MSETYDVLIIGAGPGGYVAAIRSAQLGFKTAVV 33


>gi|284038278|ref|YP_003388208.1| FAD dependent oxidoreductase TIGR03364 [Spirosoma linguale DSM
          74]
 gi|283817571|gb|ADB39409.1| FAD dependent oxidoreductase TIGR03364 [Spirosoma linguale DSM
          74]
          Length = 383

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          +  SYD+IVIG G  G   A  AAK G    L+      IG+   N
Sbjct: 1  MTSSYDLIVIGAGALGTFHAYHAAKAGKRVLLLEKDRYPIGATVRN 46


>gi|229161706|ref|ZP_04289686.1| Sarcosine oxidase alpha subunit [Bacillus cereus R309803]
 gi|228621951|gb|EEK78797.1| Sarcosine oxidase alpha subunit [Bacillus cereus R309803]
          Length = 439

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 31 DVIIIGAGPAGLSASISCARFGLNVLVI 58


>gi|222148819|ref|YP_002549776.1| soluble pyridine nucleotide transhydrogenase [Agrobacterium vitis
          S4]
 gi|221735805|gb|ACM36768.1| soluble pyridine nucleotide transhydrogenase [Agrobacterium vitis
          S4]
          Length = 474

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++VIG G AG  AA  AAKL     +I
Sbjct: 3  QYDLVVIGSGPAGRRAAIQAAKLSKKVLVI 32


>gi|169791731|pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791732|pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791733|pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791734|pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791735|pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791736|pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Open And Closed
           Conformation
 gi|169791737|pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791738|pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791739|pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791740|pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791741|pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791742|pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis With Nad+
           And Pyruvate
 gi|169791743|pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis
 gi|169791744|pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis
 gi|169791745|pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Closed Conformation
 gi|169791746|pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
           Mycobacterium Tuberculosis In The Closed Conformation
          Length = 377

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207


>gi|169791729|pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis In Complex
           With Nadh.
 gi|169791730|pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
           Dehydrogenase From Mycobacterium Tuberculosis In Complex
           With Nadh
          Length = 377

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207


>gi|158517972|ref|NP_001103509.1| squalene monooxygenase [Danio rerio]
 gi|157422798|gb|AAI53319.1| Zgc:171801 protein [Danio rerio]
          Length = 557

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G   AAV A+ G    ++         I      P     +  LG    V
Sbjct: 109 EVIIVGAGVLGSAMAAVLARDGRRVTVVGRDMKEPDRIVGELLQPGGFRVLKDLGLEGTV 168

Query: 60  REIDA--LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +DA  ++G +      +  +  +   ++   ++G R       + + ++R  L++ N+
Sbjct: 169 EGLDAHVVNGYVIHD-MESRTEVEIPYPQQENCIQGGRA-FHHGRFIMGLRRAALAEPNV 226

Query: 118 DVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
             ++G V     E+  ++ I            +R    ++  G F +  
Sbjct: 227 KFVEGTVTSLEEEEGCVTGIQYREKDTGMLKEVRAPLTIVADGCFSKFR 275


>gi|218530968|ref|YP_002421784.1| dihydrolipoamide dehydrogenase [Methylobacterium chloromethanicum
          CM4]
 gi|218523271|gb|ACK83856.1| dihydrolipoamide dehydrogenase [Methylobacterium chloromethanicum
          CM4]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IG G  G  AA  +A+LG  TA++
Sbjct: 1  MSETYDVLIIGAGPGGYVAAIRSAQLGFKTAVV 33


>gi|126513543|gb|ABO15879.1| halogenase [Streptomyces sp. UC 11065]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 1  MINR--SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI++   +DV +IG G  G    A  A+ G    LI
Sbjct: 1  MISKAQRFDVAIIGAGMGGSMLGAALARNGVKVLLI 36


>gi|126513515|gb|ABO15853.1| halogenase [Streptomyces vitaminophilus]
          Length = 552

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 1  MINR--SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          MI++   +DV +IG G  G    A  A+ G    LI
Sbjct: 1  MISKANRFDVAIIGAGMGGSMLGAALARNGVKVLLI 36


>gi|44566|emb|CAA44791.1| alanine dehydrogenase [Mycobacterium tuberculosis str. Erdman]
          Length = 373

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 172 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 209


>gi|240139539|ref|YP_002964015.1| dihydrolipoamide dehydrogenase, E3 Component of Pyruvate
          dehydrogenase multienzyme complex [Methylobacterium
          extorquens AM1]
 gi|22652786|gb|AAN03814.1|AF497851_4 dihydrolipoamide dehydrogenase [Methylobacterium extorquens AM1]
 gi|240009512|gb|ACS40738.1| dihydrolipoamide dehydrogenase, E3 Component of Pyruvate
          dehydrogenase multienzyme complex [Methylobacterium
          extorquens AM1]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IG G  G  AA  +A+LG  TA++
Sbjct: 1  MSETYDVLIIGAGPGGYVAAIRSAQLGFKTAVV 33


>gi|15842318|ref|NP_337355.1| alanine dehydrogenase [Mycobacterium tuberculosis CDC1551]
 gi|13882613|gb|AAK47169.1| alanine dehydrogenase [Mycobacterium tuberculosis CDC1551]
          Length = 371

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207


>gi|31793956|ref|NP_856449.1| L-alanine dehydrogenase [Mycobacterium bovis AF2122/97]
 gi|121638660|ref|YP_978884.1| secreted l-alanine dehydrogenase aldb [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|224991152|ref|YP_002645841.1| secreted L-alanine dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289448438|ref|ZP_06438182.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
          tuberculosis CPHL_A]
 gi|289575478|ref|ZP_06455705.1| alanine dehydrogenase/PNT domain-containing protein
          [Mycobacterium tuberculosis K85]
 gi|31619550|emb|CAD94988.1| SECRETED L-ALANINE DEHYDROGENASE ALDb [SECOND PART] (40 KDA
          ANTIGEN) (TB43) [Mycobacterium bovis AF2122/97]
 gi|121494308|emb|CAL72786.1| Secreted l-alanine dehydrogenase aldb [second part]
          [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774267|dbj|BAH27073.1| secreted L-alanine dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|289421396|gb|EFD18597.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
          tuberculosis CPHL_A]
 gi|289539909|gb|EFD44487.1| alanine dehydrogenase/PNT domain-containing protein
          [Mycobacterium tuberculosis K85]
          Length = 239

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 38 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 75


>gi|16800116|ref|NP_470384.1| dihydrolipoamide dehydrogenase [Listeria innocua Clip11262]
 gi|254823672|ref|ZP_05228673.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J1-194]
 gi|255520832|ref|ZP_05388069.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J1-175]
 gi|16413506|emb|CAC96278.1| PdhD [Listeria innocua Clip11262]
 gi|293592894|gb|EFG00655.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J1-194]
 gi|313619517|gb|EFR91197.1| dihydrolipoyl dehydrogenase [Listeria innocua FSL S4-378]
 gi|313624248|gb|EFR94300.1| dihydrolipoyl dehydrogenase [Listeria innocua FSL J1-023]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|15609917|ref|NP_217296.1| secreted L-alanine dehydrogenase ALD (40 kDa antigen) (TB43)
           [Mycobacterium tuberculosis H37Rv]
 gi|148662622|ref|YP_001284145.1| alanine dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148823968|ref|YP_001288722.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis F11]
 gi|167968610|ref|ZP_02550887.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis H37Ra]
 gi|215404750|ref|ZP_03416931.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis 02_1987]
 gi|215412593|ref|ZP_03421321.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428212|ref|ZP_03426131.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis T92]
 gi|215431720|ref|ZP_03429639.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis EAS054]
 gi|215447032|ref|ZP_03433784.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis T85]
 gi|218754521|ref|ZP_03533317.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis GM 1503]
 gi|219558790|ref|ZP_03537866.1| secreted L-alanine dehydrogenase ald (40 kDa antigen)
           [Mycobacterium tuberculosis T17]
 gi|253798136|ref|YP_003031137.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232878|ref|ZP_04926205.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis C]
 gi|254365431|ref|ZP_04981476.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551839|ref|ZP_05142286.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260201908|ref|ZP_05769399.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis T46]
 gi|289444325|ref|ZP_06434069.1| alanine dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289553433|ref|ZP_06442643.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis KZN 605]
 gi|289570959|ref|ZP_06451186.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis T17]
 gi|289746583|ref|ZP_06505961.1| secreted l-alanine dehydrogenase ald [Mycobacterium tuberculosis
           02_1987]
 gi|289751437|ref|ZP_06510815.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis T92]
 gi|289754886|ref|ZP_06514264.1| secreted l-alanine dehydrogenase ald [Mycobacterium tuberculosis
           EAS054]
 gi|289758907|ref|ZP_06518285.1| secreted L-alanine dehydrogenase ald [Mycobacterium tuberculosis
           T85]
 gi|289762952|ref|ZP_06522330.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis GM 1503]
 gi|294994127|ref|ZP_06799818.1| alanine dehydrogenase [Mycobacterium tuberculosis 210]
 gi|297635391|ref|ZP_06953171.1| alanine dehydrogenase [Mycobacterium tuberculosis KZN 4207]
 gi|297732389|ref|ZP_06961507.1| alanine dehydrogenase [Mycobacterium tuberculosis KZN R506]
 gi|298526246|ref|ZP_07013655.1| L-alanine dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|306777061|ref|ZP_07415398.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu001]
 gi|306780963|ref|ZP_07419300.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu002]
 gi|306785591|ref|ZP_07423913.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu003]
 gi|306790186|ref|ZP_07428508.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu004]
 gi|306794270|ref|ZP_07432572.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu005]
 gi|306798688|ref|ZP_07436990.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu006]
 gi|306804543|ref|ZP_07441211.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu008]
 gi|306807417|ref|ZP_07444085.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu007]
 gi|306968842|ref|ZP_07481503.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu009]
 gi|306973176|ref|ZP_07485837.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu010]
 gi|307080885|ref|ZP_07490055.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu011]
 gi|307085476|ref|ZP_07494589.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu012]
 gi|313659721|ref|ZP_07816601.1| alanine dehydrogenase [Mycobacterium tuberculosis KZN V2475]
 gi|6166116|sp|P30234|DHA_MYCTU RecName: Full=Alanine dehydrogenase; AltName: Full=40 kDa antigen;
           AltName: Full=TB43
 gi|169404658|pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404659|pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404660|pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404661|pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404662|pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404663|pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
 gi|169404674|pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
           Pyruvate
 gi|169404675|pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
           Pyruvate
 gi|169404676|pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
           Pyruvate
 gi|2624302|emb|CAA15575.1| SECRETED L-ALANINE DEHYDROGENASE ALD (40 KDA ANTIGEN) (TB43)
           [Mycobacterium tuberculosis H37Rv]
 gi|3089351|gb|AAC38804.1| L-alanine dehydrogenase [Mycobacterium tuberculosis]
 gi|124601937|gb|EAY60947.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis C]
 gi|134150944|gb|EBA42989.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506774|gb|ABQ74583.1| alanine dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148722495|gb|ABR07120.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis F11]
 gi|253319639|gb|ACT24242.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417244|gb|EFD14484.1| alanine dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289438065|gb|EFD20558.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis KZN 605]
 gi|289544713|gb|EFD48361.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis T17]
 gi|289687111|gb|EFD54599.1| secreted l-alanine dehydrogenase ald [Mycobacterium tuberculosis
           02_1987]
 gi|289692024|gb|EFD59453.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis T92]
 gi|289695473|gb|EFD62902.1| secreted l-alanine dehydrogenase ald [Mycobacterium tuberculosis
           EAS054]
 gi|289710458|gb|EFD74474.1| secreted L-alanine dehydrogenase ald (40 kda antigen)
           [Mycobacterium tuberculosis GM 1503]
 gi|289714471|gb|EFD78483.1| secreted L-alanine dehydrogenase ald [Mycobacterium tuberculosis
           T85]
 gi|298496040|gb|EFI31334.1| L-alanine dehydrogenase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214570|gb|EFO73969.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu001]
 gi|308326216|gb|EFP15067.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu002]
 gi|308329774|gb|EFP18625.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu003]
 gi|308333380|gb|EFP22231.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu004]
 gi|308337403|gb|EFP26254.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu005]
 gi|308341068|gb|EFP29919.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu006]
 gi|308346148|gb|EFP34999.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu007]
 gi|308348873|gb|EFP37724.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu008]
 gi|308353593|gb|EFP42444.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu009]
 gi|308357439|gb|EFP46290.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu010]
 gi|308361389|gb|EFP50240.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu011]
 gi|308365000|gb|EFP53851.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis SUMu012]
 gi|323718626|gb|EGB27790.1| secreted L-alanine dehydrogenase ald [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904395|gb|EGE51328.1| 40 kDa secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis W-148]
 gi|328457909|gb|AEB03332.1| 40 kda secreted L-alanine dehydrogenase ald [Mycobacterium
           tuberculosis KZN 4207]
          Length = 371

 Score = 41.1 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIG G AG  AA +A  +GA+  ++      +  +
Sbjct: 170 DVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL 207


>gi|332705764|ref|ZP_08425840.1| succinate dehydrogenase subunit A [Lyngbya majuscula 3L]
 gi|332355556|gb|EGJ35020.1| succinate dehydrogenase subunit A [Lyngbya majuscula 3L]
          Length = 575

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 91/285 (31%), Gaps = 54/285 (18%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGAS--TALIT----HKTSTIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AGC AA    +       AL+      ++ ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGCRAALEIKRSEPKLDVALVAKTHPIRSHSVAAQGGMAATLKNVDASD 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQADRE 101
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  SWEAHAFDTVKGSDYLADQDAVEILTKEAPEVVIELEHMGVLF-SRLPDGRIAQRAFGGH 121

Query: 102 LYRL----------AMQREILS--QENLDVIQGE--VAGFNTEKNIISSIVM-----QDN 142
            +R           A+  E+++  + N   +  E  V     E+     +VM        
Sbjct: 122 SHRRTCYAADKTGHAILHELVNNLRHNGVKLYDEWYVMQLILEEGQAKGVVMFQLLDTKV 181

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS-FMKFDF----DTGRLK 197
            ++R   V+  TG +  G +        A        ++L        +F     TG   
Sbjct: 182 EVVRAKAVMFATGGY--GRVFNTTSNDFASTGDGLAMSALAGVPLEDMEFVQFHPTGLYP 239

Query: 198 TG----TPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238
            G       R +G  +I  + ++  +D            IT+R I
Sbjct: 240 VGVLISEAVRGEGAYLINSEGDRFMSDYAPKQMELAPRDITSRAI 284


>gi|328475303|gb|EGF46079.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 220]
          Length = 466

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|325292764|ref|YP_004278628.1| dihydrolipoamide dehydrogenase [Agrobacterium sp. H13-3]
 gi|325060617|gb|ADY64308.1| dihydrolipoamide dehydrogenase [Agrobacterium sp. H13-3]
          Length = 481

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +SYDVI+IG G  G  AA  AA+LG   A++
Sbjct: 1  MAQSYDVIIIGSGPGGYIAAIRAAQLGMKVAVV 33


>gi|323142927|ref|ZP_08077637.1| putative alkyl hydroperoxide reductase F subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417280|gb|EFY07904.1| putative alkyl hydroperoxide reductase F subunit [Succinatimonas
           hippei YIT 12066]
          Length = 577

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 53/171 (30%), Gaps = 44/171 (25%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD +++GGG AG  AA   A+                               LV E 
Sbjct: 36  NELYDAVIVGGGPAGLTAALYLARARYRV--------------------------LVVEK 69

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D   G +        I   V+N        G             M+R+  +    + +  
Sbjct: 70  DRFGGQI-------TITHEVVNYPGVEKTSGEALT-------ETMRRQAQNF-GAEFLLA 114

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           EV     + + I S+V      +R  +V++ TG   R  +         GR
Sbjct: 115 EVTDLKLDGD-IKSVVTSRG-TLRAFSVMIATGANPR-RVGFNGEDEFRGR 162


>gi|305432965|ref|ZP_07402123.1| fumarate reductase subunit A [Campylobacter coli JV20]
 gi|304444119|gb|EFM36774.1| fumarate reductase subunit A [Campylobacter coli JV20]
          Length = 667

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MINRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGG 52
          ++N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  +   G 
Sbjct: 4  IMNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLGNGA 63

Query: 53 LGKG 56
           G+G
Sbjct: 64 KGEG 67


>gi|238060644|ref|ZP_04605353.1| kynurenine 3-monooxygenase [Micromonospora sp. ATCC 39149]
 gi|237882455|gb|EEP71283.1| kynurenine 3-monooxygenase [Micromonospora sp. ATCC 39149]
          Length = 449

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  +  ++ V+G G AGC  A   A+ G   AL 
Sbjct: 1  MNPQQDEIAVVGAGLAGCLLACFLARRGYRVALY 34


>gi|229493042|ref|ZP_04386837.1| monomeric sarcosine oxidase [Rhodococcus erythropolis SK121]
 gi|229320072|gb|EEN85898.1| monomeric sarcosine oxidase [Rhodococcus erythropolis SK121]
          Length = 369

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          ++   DVIVIGGG  G  AA   A  G S      +    G   
Sbjct: 1  MSEILDVIVIGGGLVGSSAAWRLAARGRSV----VQLEQFGPGH 40


>gi|226363857|ref|YP_002781639.1| 3-ketosteroid-delta-1-dehydrogenase [Rhodococcus opacus B4]
 gi|226242346|dbj|BAH52694.1| 3-keto-5alpha-steroid delta(1)-dehydrogenase KstD3 [Rhodococcus
          opacus B4]
          Length = 571

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD++V+G G  G  AA  AA  G S  ++
Sbjct: 4  MSKHEYDIVVVGSGAGGMTAALTAAHKGLSVVIL 37


>gi|184201087|ref|YP_001855294.1| dihydrolipoamide dehydrogenase [Kocuria rhizophila DC2201]
 gi|183581317|dbj|BAG29788.1| dihydrolipoamide dehydrogenase [Kocuria rhizophila DC2201]
          Length = 455

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YD++V+GGG AG  AA  A +LG S ALI
Sbjct: 1  MADNQYDILVLGGGSAGYSAALRAVQLGYSVALI 34


>gi|217979425|ref|YP_002363572.1| soluble pyridine nucleotide transhydrogenase [Methylocella
          silvestris BL2]
 gi|217504801|gb|ACK52210.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Methylocella silvestris BL2]
          Length = 462

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD+IVIG G +G  AA  +AKLG S  ++
Sbjct: 2  HDYDMIVIGSGPSGRRAAIQSAKLGKSVLVV 32


>gi|163852209|ref|YP_001640252.1| dihydrolipoamide dehydrogenase [Methylobacterium extorquens PA1]
 gi|163663814|gb|ABY31181.1| dihydrolipoamide dehydrogenase [Methylobacterium extorquens PA1]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IG G  G  AA  +A+LG  TA++
Sbjct: 1  MSETYDVLIIGAGPGGYVAAIRSAQLGFKTAVV 33


>gi|111021504|ref|YP_704476.1| 3-ketosteroid-delta-1-dehydrogenase [Rhodococcus jostii RHA1]
 gi|110821034|gb|ABG96318.1| 3-ketosteroid-delta-1-dehydrogenase [Rhodococcus jostii RHA1]
          Length = 572

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD++V+G G  G  AA  AA  G S  ++
Sbjct: 1  MSKHEYDIVVVGSGAGGMTAALTAAHKGLSVVIL 34


>gi|72382703|ref|YP_292058.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str.
          NATL2A]
 gi|72002553|gb|AAZ58355.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str.
          NATL2A]
          Length = 480

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
          I+  +D+IV+G G+ G +AA  AA+ G   A++       G+     C P+   L     
Sbjct: 4  ISFDFDLIVVGAGYGGFDAAKHAAEAGLKVAIVE-SRDMGGTCVNRGCVPSKALLAASGK 62

Query: 59 VREI 62
          VRE+
Sbjct: 63 VREL 66


>gi|15888759|ref|NP_354440.1| dihydrolipoamide dehydrogenase [Agrobacterium tumefaciens str.
          C58]
 gi|15156507|gb|AAK87225.1| dihydrolipoamide dehydrogenase [Agrobacterium tumefaciens str.
          C58]
          Length = 481

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +SYDVI+IG G  G  AA  AA+LG   A++
Sbjct: 1  MAQSYDVIIIGSGPGGYIAAIRAAQLGMKVAVV 33


>gi|16330111|ref|NP_440839.1| succinate dehydrogenase flavoprotein subunit [Synechocystis sp.
          PCC 6803]
 gi|1652598|dbj|BAA17519.1| succinate dehydrogenase flavoprotein subunit [Synechocystis sp.
          PCC 6803]
          Length = 575

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M+ +  DV+++GGG AGC AA    +L   T +     +         A GG+     ++
Sbjct: 1  MLEQ--DVVIVGGGLAGCRAALEIKRLAPDTKVAIVAKTHPIRSHSVAAQGGIAAS--LK 56

Query: 61 EIDALDGLMGRVAD 74
           +DA D       D
Sbjct: 57 NVDAEDSWEAHAFD 70


>gi|119775535|ref|YP_928275.1| flavocytochrome c flavin subunit [Shewanella amazonensis SB2B]
 gi|119768035|gb|ABM00606.1| flavocytochrome c flavin subunit [Shewanella amazonensis SB2B]
          Length = 505

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGHL 58
           + ++DV+V+G G AG  AA  A + GA   +I      +  +    AI G    +   HL
Sbjct: 41  DETFDVVVVGSGLAGTCAAIRAKENGAKNTII---IEKMPVLGGTSAISGLNFSVVNSHL 97

Query: 59  VREIDALDGLMGRVADAAGI 78
            +     D       D +  
Sbjct: 98  QQAQGIEDSAALFAEDISRA 117


>gi|310814720|ref|YP_003962684.1| monooxygenase, FAD-binding protein [Ketogulonicigenium vulgare
          Y25]
 gi|308753455|gb|ADO41384.1| monooxygenase, FAD-binding protein [Ketogulonicigenium vulgare
          Y25]
          Length = 381

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++    V VIGGG AG  AA   A+ GA   L 
Sbjct: 1  MSDDRSVAVIGGGIAGTCAALAFAQRGARVTLY 33


>gi|288919245|ref|ZP_06413581.1| Methyltransferase type 12 [Frankia sp. EUN1f]
 gi|288349340|gb|EFC83581.1| Methyltransferase type 12 [Frankia sp. EUN1f]
          Length = 589

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV+++GGG AG  A    A+   +  ++
Sbjct: 1  MDATYDVVIVGGGPAGLSAGLTLARARRAVLVV 33


>gi|282862909|ref|ZP_06271970.1| FAD dependent oxidoreductase [Streptomyces sp. ACTE]
 gi|282562595|gb|EFB68136.1| FAD dependent oxidoreductase [Streptomyces sp. ACTE]
          Length = 561

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVI++G G AG  A  + A+ GA   LI
Sbjct: 17 HYDVIILGTGLAGSVAGTIMARHGAKVLLI 46


>gi|254821017|ref|ZP_05226018.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          intracellulare ATCC 13950]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD++VIG G  G +AA  +AKLG S A++
Sbjct: 5  QEYDMVVIGSGPGGQKAAIASAKLGKSVAIV 35


>gi|229488724|ref|ZP_04382590.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Rhodococcus erythropolis SK121]
 gi|229324228|gb|EEN89983.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Rhodococcus erythropolis SK121]
          Length = 551

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++   DVIV+G G AG  A     + G    ++  
Sbjct: 1  MSEQADVIVVGAGLAGLVATYELTRAGRKVLVVEQ 35


>gi|226308831|ref|YP_002768791.1| hypothetical protein RER_53440 [Rhodococcus erythropolis PR4]
 gi|226187948|dbj|BAH36052.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 551

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++   DVIV+G G AG  A     + G    ++  
Sbjct: 1  MSEQADVIVVGAGLAGLVATYELTRAGRKVLVVEQ 35


>gi|163783707|ref|ZP_02178694.1| hypothetical protein HG1285_15109 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881032|gb|EDP74549.1| hypothetical protein HG1285_15109 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 345

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           YDV+++G G AG  AA + ++      L+  K +    + C
Sbjct: 2  KYDVLIVGSGPAGATAAYILSRNDVRVLLVDIKRAPGVPVQC 43


>gi|241663419|ref|YP_002981779.1| succinate dehydrogenase flavoprotein subunit [Ralstonia pickettii
          12D]
 gi|309783485|ref|ZP_07678186.1| succinate dehydrogenase, flavoprotein subunit [Ralstonia sp.
          5_7_47FAA]
 gi|240865446|gb|ACS63107.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Ralstonia pickettii 12D]
 gi|308917743|gb|EFP63439.1| succinate dehydrogenase, flavoprotein subunit [Ralstonia sp.
          5_7_47FAA]
          Length = 592

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLAEAGLSVAVLS 42


>gi|126733983|ref|ZP_01749730.1| NADH:flavin oxidoreductase/NADH oxidase [Roseobacter sp. CCS2]
 gi|126716849|gb|EBA13713.1| NADH:flavin oxidoreductase/NADH oxidase [Roseobacter sp. CCS2]
          Length = 648

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V V+G G AG  AA  AA+ G +  +   K   IG
Sbjct: 351 VAVVGAGPAGLSAALTAAERGHAVTIFD-KLDEIG 384


>gi|187926535|ref|YP_001892880.1| succinate dehydrogenase, flavoprotein subunit [Ralstonia
          pickettii 12J]
 gi|187929228|ref|YP_001899715.1| succinate dehydrogenase flavoprotein subunit [Ralstonia pickettii
          12J]
 gi|241666046|ref|YP_002984405.1| succinate dehydrogenase flavoprotein subunit [Ralstonia pickettii
          12D]
 gi|187726118|gb|ACD27283.1| succinate dehydrogenase, flavoprotein subunit [Ralstonia
          pickettii 12J]
 gi|187728289|gb|ACD29453.1| succinate dehydrogenase, flavoprotein subunit [Ralstonia
          pickettii 12J]
 gi|240868073|gb|ACS65733.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Ralstonia pickettii 12D]
          Length = 592

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G S A+++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLAEAGLSVAVLS 42


>gi|152997085|ref|YP_001341920.1| FAD dependent oxidoreductase [Marinomonas sp. MWYL1]
 gi|150838009|gb|ABR71985.1| FAD dependent oxidoreductase [Marinomonas sp. MWYL1]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV ++GGG  G  AA   AK G S  L+
Sbjct: 25 QYDVAIVGGGFTGLSAAIALAKQGLSVVLL 54


>gi|118589295|ref|ZP_01546701.1| hypothetical protein SIAM614_07118 [Stappia aggregata IAM 12614]
 gi|118437995|gb|EAV44630.1| hypothetical protein SIAM614_07118 [Stappia aggregata IAM 12614]
          Length = 440

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          N  +DV +IG G AG  AA   A+ G S  ++  +    G+   N   
Sbjct: 32 NAVFDVAIIGAGFAGLSAALRLAQAGVSVCVLEAEHVGYGASGRNGGF 79


>gi|120437474|ref|YP_863160.1| succinate dehydrogenase flavoprotein subunit [Gramella forsetii
          KT0803]
 gi|117579624|emb|CAL68093.1| succinate dehydrogenase flavoprotein subunit [Gramella forsetii
          KT0803]
          Length = 667

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKTFC 64


>gi|319942698|ref|ZP_08017004.1| hypothetical protein HMPREF9464_02223 [Sutterella wadsworthensis
          3_1_45B]
 gi|319803708|gb|EFW00649.1| hypothetical protein HMPREF9464_02223 [Sutterella wadsworthensis
          3_1_45B]
          Length = 475

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 20/36 (55%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          DVIV+G G AG  AA  A + GA   LI  K   IG
Sbjct: 31 DVIVVGAGLAGLSAAVSAREAGARRVLILEKDVMIG 66


>gi|257455713|ref|ZP_05620942.1| 2,4-dienoyl-coa reductase [Enhydrobacter aerosaccus SK60]
 gi|257446996|gb|EEV22010.1| 2,4-dienoyl-coa reductase [Enhydrobacter aerosaccus SK60]
          Length = 701

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 12/188 (6%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLM 69
           V+G G AG  AA VAAK G    L   +   IG    N A    GK      I     L+
Sbjct: 390 VVGAGMAGLSAATVAAKRGHQVTLFEAQ-DKIGG-QFNYAKVIPGKEEFFETIRYFTNLV 447

Query: 70  GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNT 129
               D+ GI+ + LN  K         Q D  +    +    L  E +++ Q        
Sbjct: 448 ----DSLGIELK-LN-HKVSKEELESGQFDDVIIATGVVPRALDFEGVELPQVMSYAELL 501

Query: 130 EKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS-NSLFNSFMK 188
               ++    +  ++I    +      +L         K   G +   P   S+ +   +
Sbjct: 502 SGQKVAG---KRVAVIGAGGIGFDVSEYLTSTHVKPFEKDAQGNVIYQPHPQSVASWKRE 558

Query: 189 FDFDTGRL 196
           +  DT   
Sbjct: 559 WGVDTNPH 566


>gi|183220460|ref|YP_001838456.1| dihydrolipoyl dehydrogenase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
 gi|189910573|ref|YP_001962128.1| dihydrolipoamide dehydrogenase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167775249|gb|ABZ93550.1| Dihydrolipoamide dehydrogenase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167778882|gb|ABZ97180.1| Dihydrolipoyl dehydrogenase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
          Length = 468

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD+IVIG G  G  AA  AA+LG   A+I
Sbjct: 2  EQYDIIVIGAGPGGYVAAVRAAQLGKKVAII 32


>gi|167590234|ref|ZP_02382622.1| D-amino-acid dehydrogenase [Burkholderia ubonensis Bu]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          DV+V+G G AG   A   A  GA   ++    +  G+   N      G+G
Sbjct: 49 DVVVVGAGFAGLSTALELAGRGARVVVLERDFAGFGASGRNAGYLAGGQG 98


>gi|167625855|ref|YP_001676149.1| flavocytochrome c [Shewanella halifaxensis HAW-EB4]
 gi|167355877|gb|ABZ78490.1| flavocytochrome c [Shewanella halifaxensis HAW-EB4]
          Length = 500

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +R YD+I++G G AG  AA  A K G    L+  K  T G
Sbjct: 33 DREYDLIIVGSGFAGLAAAYSANKAGIKNILVLEKMETWG 72


>gi|156543130|ref|XP_001605631.1| PREDICTED: similar to ENSANGP00000011212 [Nasonia vitripennis]
          Length = 939

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV++IGGG +GC A    AK G +T L+
Sbjct: 91  DVVIIGGGASGCSALYQLAKRGVNTVLL 118


>gi|153012081|ref|YP_001373292.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
 gi|151563969|gb|ABS17463.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
          Length = 423

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           +D+I++GGG  GC  A  AA+ G    ++   T        N       +G   RE+
Sbjct: 12 KWDLIIVGGGIVGCSTALYAARSGLRVLIVERDTPGSRQSGRNLGFVRQ-QGRDFREL 68


>gi|124023375|ref|YP_001017682.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963661|gb|ABM78417.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
           [Prochlorococcus marinus str. MIT 9303]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 30/168 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA V AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4   VAVVGGGPSGSCAAEVLAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVDEFDLPES 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPR---TQADRELYRLAMQREILSQENLDVIQGEV 124
               + D      R+++              +  D+  Y    +RE++       ++   
Sbjct: 58  ----IIDRKVRNMRMISPSNREVDITLDKVYSPDDKSEYIGMCRREVMD----AFMRDRA 109

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           A      N+I+ +V +           + TG+  +G   I       G
Sbjct: 110 ASL--GTNLINGLVTK-----------IDTGSNRQGPYTITYSDYSTG 144


>gi|33862850|ref|NP_894410.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634766|emb|CAE20752.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
           [Prochlorococcus marinus str. MIT 9313]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 30/168 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA V AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4   VAVVGGGPSGSCAAEVLAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVDEFDLPES 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPR---TQADRELYRLAMQREILSQENLDVIQGEV 124
               + D      R+++              +  D+  Y    +RE++       ++   
Sbjct: 58  ----IIDRKVRNMRMISPSNREVDITLDKVYSPDDKSEYIGMCRREVMD----AFMRDRA 109

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           A      N+I+ +V +           + TG+  +G   I       G
Sbjct: 110 ASL--GTNLINGLVTK-----------IDTGSNRQGPYTITYSDYSTG 144


>gi|163940588|ref|YP_001645472.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Bacillus weihenstephanensis KBAB4]
 gi|163862785|gb|ABY43844.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Bacillus weihenstephanensis KBAB4]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|119356597|ref|YP_911241.1| NADH:flavin oxidoreductase/NADH oxidase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353946|gb|ABL64817.1| NADH:flavin oxidoreductase/NADH oxidase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 646

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 14/78 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL----GKGHLVREID 63
           V VIGGG +G  AA V  + G  T L              P +GG+     KG    +I 
Sbjct: 385 VAVIGGGPSGITAALVLQQRGFQTVLFDP----------LPRLGGMLNVADKGIGKDKIT 434

Query: 64  ALDGLMGRVADAAGIQFR 81
                M   +D +GIQ R
Sbjct: 435 CCVESMIVQSDRSGIQLR 452


>gi|307297138|ref|ZP_07576952.1| FAD dependent oxidoreductase [Sphingobium chlorophenolicum L-1]
 gi|306877442|gb|EFN08672.1| FAD dependent oxidoreductase [Sphingobium chlorophenolicum L-1]
          Length = 536

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YD ++IGGGH G   A   A+ G S  ++
Sbjct: 1  MTKAYDAVIIGGGHNGLVCAFYLARAGYSVRIL 33


>gi|282919295|ref|ZP_06327030.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C427]
 gi|282317105|gb|EFB47479.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          C427]
          Length = 473

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++LG   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQAVKQAAMFG 71


>gi|260582989|ref|ZP_05850772.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
           [Haemophilus influenzae NT127]
 gi|260093973|gb|EEW77878.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
           [Haemophilus influenzae NT127]
          Length = 432

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG   A    + G    +I +  + I   S +  +          E   
Sbjct: 2   NFDVAIIGGGLAGLTCAIALQQCGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRT 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|237735631|ref|ZP_04566112.1| enoate reductase [Mollicutes bacterium D7]
 gi|229381376|gb|EEO31467.1| enoate reductase [Coprobacillus sp. D7]
          Length = 647

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           VIV+GGG AGC+AA  A   G    LI  +   +G
Sbjct: 388 VIVVGGGPAGCKAAITAHDRGHQVILIEQR-DKLG 421


>gi|224109822|ref|XP_002315324.1| hypothetical protein POPTRDRAFT_228111 [Populus trichocarpa]
 gi|222864364|gb|EEF01495.1| hypothetical protein POPTRDRAFT_228111 [Populus trichocarpa]
          Length = 675

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +VIV+G G AG  AA    +LG    ++  +    G +      GG G
Sbjct: 112 NVIVVGAGLAGLSAARQLMRLGFKVTVLEGRKRAGGRVYTMRMEGGAG 159


>gi|254468720|ref|ZP_05082126.1| alkyl hydroperoxide reductase, F subunit [beta proteobacterium
           KB13]
 gi|207087530|gb|EDZ64813.1| alkyl hydroperoxide reductase, F subunit [beta proteobacterium
           KB13]
          Length = 518

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
              +DV+++GGG AG  +A  +A+ G  T ++ 
Sbjct: 211 KEDFDVLIVGGGPAGASSAVYSARKGIKTGIVA 243


>gi|198274737|ref|ZP_03207269.1| hypothetical protein BACPLE_00896 [Bacteroides plebeius DSM
          17135]
 gi|198272184|gb|EDY96453.1| hypothetical protein BACPLE_00896 [Bacteroides plebeius DSM
          17135]
          Length = 488

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV++IG G  G E A + +K G    ++
Sbjct: 2  KYDVVIIGSGLGGLECAHILSKAGKRVLVL 31


>gi|168049013|ref|XP_001776959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671660|gb|EDQ58208.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 428

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +YD IVIG G  G   A   AK G S  L+  
Sbjct: 14 TYDAIVIGAGIIGSSTAYQLAKRGKSVLLLEQ 45


>gi|188579299|ref|YP_001922744.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium populi BJ001]
 gi|179342797|gb|ACB78209.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium populi BJ001]
          Length = 300

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 43/150 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI++GGG AG  AA +  +      L                                
Sbjct: 2   HDVIIVGGGPAGLNAALILGRARRKVLLCD------------------------------ 31

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
               G   +AA  +   L  + G      R Q          + ++   E ++     V 
Sbjct: 32  ---AGEPRNAATPRTWGLFTRDGTPPFDLRAQG---------RADLERYETVECRAVSVT 79

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               E    + +V+ D    R   ++L TG
Sbjct: 80  EAAREGEGFA-VVLADGRRERARRLILATG 108


>gi|153951501|ref|YP_001398549.1| fumarate reductase flavoprotein subunit [Campylobacter jejuni
          subsp. doylei 269.97]
 gi|152938947|gb|ABS43688.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. doylei 269.97]
          Length = 663

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  + A G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKNGQSVTLLSICPVKRSHSAAVQGGMQASLANGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|91780678|ref|YP_555885.1| putative dehydrogenase [Burkholderia xenovorans LB400]
 gi|91693338|gb|ABE36535.1| Putative dehydrogenase [Burkholderia xenovorans LB400]
          Length = 548

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          ++++DV+++GGGH G  A    A  G    ++      +G M+ +  +      HL+ 
Sbjct: 4  SQTHDVVIVGGGHNGLSAGCYLAAAGKKVLVLEA-LEKVGGMASSGYLLPEAPEHLIH 60


>gi|169772269|ref|XP_001820603.1| amine oxidase [Aspergillus oryzae RIB40]
 gi|83768464|dbj|BAE58601.1| unnamed protein product [Aspergillus oryzae]
          Length = 433

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DV VIG G AG  AA   +K G    L+
Sbjct: 1  MGEVFDVAVIGAGMAGIVAARDLSKNGHKVVLV 33


>gi|84516113|ref|ZP_01003473.1| N-methylproline demethylase, putative [Loktanella vestfoldensis
           SKA53]
 gi|84509809|gb|EAQ06266.1| N-methylproline demethylase, putative [Loktanella vestfoldensis
           SKA53]
          Length = 681

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V++IG G AG EAA VAA  G +  +   +  
Sbjct: 389 VVIIGAGPAGLEAARVAAARGHAVTVFEAQPD 420


>gi|46907287|ref|YP_013676.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47092947|ref|ZP_00230728.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes str. 4b
          H7858]
 gi|217964852|ref|YP_002350530.1| dihydrolipoyl dehydrogenase [Listeria monocytogenes HCC23]
 gi|226223673|ref|YP_002757780.1| dihydrolipoamide dehydrogenase, E3 subunit of pyruvate
          dehydrogenase complex [Listeria monocytogenes
          Clip81459]
 gi|254853058|ref|ZP_05242406.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          R2-503]
 gi|254933397|ref|ZP_05266756.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes HPB2262]
 gi|254993590|ref|ZP_05275780.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J2-064]
 gi|290893794|ref|ZP_06556773.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J2-071]
 gi|300765906|ref|ZP_07075879.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          N1-017]
 gi|46880554|gb|AAT03853.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47018694|gb|EAL09446.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes str. 4b
          H7858]
 gi|217334122|gb|ACK39916.1| dihydrolipoyl dehydrogenase [Listeria monocytogenes HCC23]
 gi|225876135|emb|CAS04841.1| Putative dihydrolipoamide dehydrogenase, E3 subunit of pyruvate
          dehydrogenase complex [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|258606405|gb|EEW19013.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          R2-503]
 gi|290556621|gb|EFD90156.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J2-071]
 gi|293584958|gb|EFF96990.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes HPB2262]
 gi|300513368|gb|EFK40442.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          N1-017]
 gi|307570589|emb|CAR83768.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes L99]
 gi|328466827|gb|EGF37941.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 1816]
 gi|332311464|gb|EGJ24559.1| Dihydrolipoyl dehydrogenase [Listeria monocytogenes str. Scott A]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
            +E    D  MG  AD   + F      KG  V
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDFTKAQEWKGGVV 96


>gi|311063493|ref|YP_003970218.1| TrxB Thioredoxin reductase/Thioredoxin/Glutaredoxin family
          protein [Bifidobacterium bifidum PRL2010]
 gi|310865812|gb|ADP35181.1| TrxB Thioredoxin reductase/Thioredoxin/Glutaredoxin family
          protein [Bifidobacterium bifidum PRL2010]
          Length = 637

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG AG  A    A+      ++
Sbjct: 10 YDVVVIGGGPAGLTAGLYLARARYRVLIL 38


>gi|310286556|ref|YP_003937814.1| Thioredoxin reductase/Thioredoxin/glutaredoxin family protein
          [Bifidobacterium bifidum S17]
 gi|309250492|gb|ADO52240.1| Thioredoxin reductase/Thioredoxin/Glutaredoxin family protein
          [Bifidobacterium bifidum S17]
          Length = 637

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG AG  A    A+      ++
Sbjct: 10 YDVVVIGGGPAGLTAGLYLARARYRVLIL 38


>gi|301383293|ref|ZP_07231711.1| hypothetical protein PsyrptM_11677 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062468|ref|ZP_07254009.1| hypothetical protein PsyrptK_20983 [Pseudomonas syringae pv.
          tomato K40]
 gi|302133450|ref|ZP_07259440.1| hypothetical protein PsyrptN_18759 [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|331018939|gb|EGH98995.1| hypothetical protein PLA106_23118 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 424

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V +IGGG AG  AA V ++ G    L       + S+     + G+G  ++    +A   
Sbjct: 24 VAIIGGGPAGLMAAEVLSQAGFKVDLY----DGMPSVGRKFLLAGVGGMNITHS-EAYPA 78

Query: 68 LMGRVADAAGIQFRVLNV 85
           + R A+ + +   +L  
Sbjct: 79 FLARYAERSAMIAPMLRA 96


>gi|224283983|ref|ZP_03647305.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Bifidobacterium bifidum NCIMB 41171]
 gi|313141133|ref|ZP_07803326.1| thioredoxin reductase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133643|gb|EFR51260.1| thioredoxin reductase [Bifidobacterium bifidum NCIMB 41171]
          Length = 637

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG AG  A    A+      ++
Sbjct: 10 YDVVVIGGGPAGLTAGLYLARARYRVLIL 38


>gi|254474480|ref|ZP_05087866.1| dihydrolipoyl dehydrogenase [Ruegeria sp. R11]
 gi|214028723|gb|EEB69558.1| dihydrolipoyl dehydrogenase [Ruegeria sp. R11]
          Length = 465

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  SYDVIIIGAGPGGYVSAIRCAQLGLKTAIVEGR-ETLGGTCLNVGCIPSKALLHATHSLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAKMGLKGK 75


>gi|194289093|ref|YP_002005000.1| hypothetical protein RALTA_A0966 [Cupriavidus taiwanensis LMG
          19424]
 gi|193222928|emb|CAQ68933.1| conserved hypothetical protein; putative fad-dependent pyridine
          nucleotide-disulphide oxidoreductase [Cupriavidus
          taiwanensis LMG 19424]
          Length = 431

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          DV V+GGG AG  AA V A  GAS A+       + S+     + G G  +L  
Sbjct: 18 DVAVVGGGPAGLMAAEVLAAQGASVAVY----DAMPSVGRKFLMAGKGGMNLTH 67


>gi|167757289|ref|ZP_02429416.1| hypothetical protein CLORAM_02839 [Clostridium ramosum DSM 1402]
 gi|167703464|gb|EDS18043.1| hypothetical protein CLORAM_02839 [Clostridium ramosum DSM 1402]
          Length = 664

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           VIV+GGG AGC+AA  A   G    LI  +   +G
Sbjct: 405 VIVVGGGPAGCKAAITAHDRGHQVILIEQR-DKLG 438


>gi|167578719|ref|ZP_02371593.1| oxidoreductase, FAD-binding protein [Burkholderia thailandensis
          TXDOH]
          Length = 430

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGVSAALNLAERGHSVAVVEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|157364834|ref|YP_001471601.1| valyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166987328|sp|A8F8Q3|SYV_THELT RecName: Full=Valyl-tRNA synthetase; AltName: Full=Valine--tRNA
           ligase; Short=ValRS
 gi|157315438|gb|ABV34537.1| valyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 861

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF-LSYPDF 513
            I E  +K F K +Q    +R++   + +  K  +   I  +   K  ++Y   LS    
Sbjct: 708 LINEEAEKNFEKLVQIIRGIRNVKAEMNIPPKRNTKVYIYGETLCKEESSYIEHLSGAQI 767

Query: 514 SIQNLFSICPDARKFSSLVIERLQIESS-YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSS 572
           S       C      S      + +      +   R M   ++++ E +  + K  D   
Sbjct: 768 SYVKEKPACCATAFVSENQHVYVDVAGLNLQSEIKRLMKNIEKLQKEREWQLKKLSDD-- 825

Query: 573 LPALSN-------ELKEKLSIL 587
              LSN       E ++KLS +
Sbjct: 826 -KFLSNAPEEAISEARQKLSEI 846


>gi|157368450|ref|YP_001476439.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Serratia
          proteamaculans 568]
 gi|157320214|gb|ABV39311.1| Glycerol-3-phosphate dehydrogenase [Serratia proteamaculans 568]
          Length = 424

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGGLGKGHLV 59
          M+   +DV+VIGGG AG   A   A+ G   A+++  +++   S      +  L  G LV
Sbjct: 1  MM--RFDVVVIGGGLAGMSCAIRLAEQGKRCAVVSSGQSALYFSSGSLDLLAQLPDGTLV 58

Query: 60 RE 61
            
Sbjct: 59 ES 60


>gi|94990382|ref|YP_598482.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10270]
 gi|94543890|gb|ABF33938.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10270]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 125 LADDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|28871795|ref|NP_794414.1| hypothetical protein PSPTO_4663 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213966784|ref|ZP_03394935.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          T1]
 gi|28855047|gb|AAO58109.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|213928634|gb|EEB62178.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          T1]
          Length = 412

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V +IGGG AG  AA V ++ G    L       + S+     + G+G  ++    +A   
Sbjct: 12 VAIIGGGPAGLMAAEVLSQAGFKVDLY----DGMPSVGRKFLLAGVGGMNITHS-EAYPA 66

Query: 68 LMGRVADAAGIQFRVLNV 85
           + R A+ + +   +L  
Sbjct: 67 FLARYAERSAMIAPMLRA 84


>gi|146279038|ref|YP_001169197.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145557279|gb|ABP71892.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 401

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 55/147 (37%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGG+ G EAAAV A+LG    ++                       L R        
Sbjct: 147 VVIGGGYVGLEAAAVGARLGLDVTVVEM-----------------APRILQRV------- 182

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
               A      FR L+  +G                            + + +G      
Sbjct: 183 ---AAPETADWFRALHTSRG----------------------------VRIREGVALDRL 211

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +  ++   + D + +    V+   G
Sbjct: 212 IGETRVTGARLTDGTELPAEFVIAGVG 238


>gi|329850153|ref|ZP_08264999.1| GMC oxidoreductase family protein [Asticcacaulis biprosthecum
          C19]
 gi|328842064|gb|EGF91634.1| GMC oxidoreductase family protein [Asticcacaulis biprosthecum
          C19]
          Length = 572

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 1  MINRS-----YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +++     +DVI++G G  G  AA    + G +  L+
Sbjct: 1  MFDKAARSTGHDVIIVGSGAGGSMAAYALTRAGINVLLL 39


>gi|307544628|ref|YP_003897107.1| hypothetical protein HELO_2038 [Halomonas elongata DSM 2581]
 gi|307216652|emb|CBV41922.1| K07007 [Halomonas elongata DSM 2581]
          Length = 391

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +YDV+VIG G AG   A  A   G    ++               + G G+ +
Sbjct: 2  TYDVVVIGAGAAGLMCALTAGYAGRRVLVV----DHANKAGKKILMSGGGRCN 50


>gi|307267240|ref|ZP_07548743.1| HI0933 family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917735|gb|EFN48006.1| HI0933 family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 406

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 18/90 (20%)

Query: 314 LPEEIQHQFIRTIPGLE-KVNIIRP-------GYAIEYDYINPKELFPTLETKKISGLFL 365
           + ++ + + + ++  L  KV  +RP       G  +    INP     T+E+K I GLF 
Sbjct: 321 ITKDERKKLVNSLKNLTFKVKGLRPIREAIVTGGGVSIKEINP----STMESKIIKGLFF 376

Query: 366 AGQINGTTGYEE------AAAQGLVAGINS 389
           AG+I    G+        A + G VAGIN+
Sbjct: 377 AGEIIDVDGFTGGFNLQIAFSTGYVAGINA 406


>gi|257064525|ref|YP_003144197.1| thioredoxin reductase [Slackia heliotrinireducens DSM 20476]
 gi|256792178|gb|ACV22848.1| thioredoxin reductase [Slackia heliotrinireducens DSM 20476]
          Length = 303

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +D+IV+G G AG  AA  A + G S  +I  K    G M+ +P I        +  ++  
Sbjct: 2  HDIIVVGAGPAGMTAALYALRNGKSVLIIE-KEGFGGQMTLSPKIENYPGTVQISGMELA 60

Query: 66 DGLMGRVADA 75
          D +M ++ + 
Sbjct: 61 DQMMNQIIEQ 70


>gi|229133726|ref|ZP_04262552.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649761|gb|EEL05770.1| Sarcosine oxidase alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI+IG G AG  A+   A+ G +  +I
Sbjct: 3  DVIIIGAGPAGLSASISCARFGLNVLVI 30


>gi|221632489|ref|YP_002521710.1| flavin containing amine oxidase [Thermomicrobium roseum DSM 5159]
 gi|221155921|gb|ACM05048.1| flavin containing amine oxidase [Thermomicrobium roseum DSM 5159]
          Length = 521

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD IVIG GH G  AA   AK G    ++
Sbjct: 1  MTGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVL 34


>gi|197295240|ref|YP_002153781.1| putative FAD-binding oxidoreductase [Burkholderia cenocepacia
          J2315]
 gi|195944719|emb|CAR57323.1| putative FAD-binding oxidoreductase [Burkholderia cenocepacia
          J2315]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 27 DVVVIGGGFTGLSAALALAQRGVSVVVL 54


>gi|194380788|dbj|BAG58547.1| unnamed protein product [Homo sapiens]
          Length = 262

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|172065338|ref|YP_001816050.1| FAD dependent oxidoreductase [Burkholderia ambifaria MC40-6]
 gi|171997580|gb|ACB68497.1| FAD dependent oxidoreductase [Burkholderia ambifaria MC40-6]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 27 DVVVIGGGFTGLSAALALAQRGVSVVVL 54


>gi|170734772|ref|YP_001773886.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
 gi|169820810|gb|ACA95391.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 27 DVVVIGGGFTGLSAALALAQRGVSVVVL 54


>gi|225163422|ref|ZP_03725739.1| FAD dependent oxidoreductase [Opitutaceae bacterium TAV2]
 gi|224801964|gb|EEG20243.1| FAD dependent oxidoreductase [Opitutaceae bacterium TAV2]
          Length = 490

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDVIVIG G  G   A V AK G    +I H 
Sbjct: 12 EYDVIVIGSGLGGLTGANVLAKAGHRVLVIEHH 44


>gi|153006782|ref|YP_001381107.1| soluble pyridine nucleotide transhydrogenase [Anaeromyxobacter
          sp. Fw109-5]
 gi|152030355|gb|ABS28123.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Anaeromyxobacter sp. Fw109-5]
          Length = 481

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV+VIG G AG   A  AA  G   AL               A  G      +RE  A
Sbjct: 3  HYDVVVIGSGPAGENGAIQAAFTGKKVAL----IEKEAVPGGASANTGTIPSKALRE-TA 57

Query: 65 LDGLMGRVADAAGIQFRV 82
          L  L  R  DA GI+ R+
Sbjct: 58 LAILQARSRDAHGIELRI 75


>gi|154251549|ref|YP_001412373.1| glutathione-disulfide reductase [Parvibaculum lavamentivorans
          DS-1]
 gi|154155499|gb|ABS62716.1| glutathione-disulfide reductase [Parvibaculum lavamentivorans
          DS-1]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YD+ VIG G  G  AA +AA  GA  A+
Sbjct: 1  MAKYDYDLFVIGAGSGGVRAARIAANYGAKVAV 33


>gi|158319639|ref|YP_001512146.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158139838|gb|ABW18150.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Alkaliphilus oremlandii OhILAs]
          Length = 598

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G AG  AA  AA+ GA   L       +GS+        +  G    EI A  
Sbjct: 146 DVVVVGSGIAGLSAAVSAAEEGAKVVL----LEKMGSVGG----ASITCG---GEILAGG 194

Query: 67  GLM 69
             M
Sbjct: 195 SEM 197


>gi|50914126|ref|YP_060098.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10394]
 gi|50903200|gb|AAT86915.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10394]
          Length = 624

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 164 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 195


>gi|323358140|ref|YP_004224536.1| thioredoxin reductase [Microbacterium testaceum StLB037]
 gi|323274511|dbj|BAJ74656.1| thioredoxin reductase [Microbacterium testaceum StLB037]
          Length = 283

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IGGG AG +AA    ++     L+
Sbjct: 2  YDAIIIGGGPAGLQAALTLGRMHRKALLL 30


>gi|319955317|ref|YP_004166584.1| fad dependent oxidoreductase [Cellulophaga algicola DSM 14237]
 gi|319423977|gb|ADV51086.1| FAD dependent oxidoreductase [Cellulophaga algicola DSM 14237]
          Length = 373

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 24/165 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD I+IGGG AG  AA    +      +             +   G      +V  ++
Sbjct: 2   KTYDTIIIGGGLAGLTAAIHLTQNNHRVLVFE-----KQEYPHHKVCGEYVSNEIVPYLN 56

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKG---------PAVRGPRTQADRELYRLAMQREILSQ 114
            L      ++DA  I     +  +G           +   R   D  LY  A++ ++   
Sbjct: 57  TLG---ISLSDAVAIDTLQFSTVQGNTITTKLPLGGIGISRYALDFSLYTRALKLDV--- 110

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
               + +G V   +   NI   +      +    T +   G    
Sbjct: 111 --TFIFEG-VNSVDFTNNIFH-VKTDSGRVFTSKTTIGAFGKRSN 151


>gi|313498352|gb|ADR59718.1| DadA, Glycine/D-amino acid oxidases (deaminating) [Pseudomonas
           putida BIRD-1]
          Length = 262

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 28/171 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK-----------TSTIGSMSCNPAIGGLGK 55
           DVI+IGGG  G  +A    + G    LI                 +G       +   GK
Sbjct: 8   DVIIIGGGAVGVSSAYFLQQAGMRVTLIEQSRVGANAPRAPFVDCVGDELSTD-LAKRGK 66

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
             L    + L   M  V+         +        RG R         L M   ++  +
Sbjct: 67  ELLFPLFEDLGYNMRLVSRFCFTSQSTI--TANSVRRGTRAD------ELLMHDMLMDMK 118

Query: 116 NL------DVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           N+       + +G +V+        +  +             V+  G    
Sbjct: 119 NIVNDRGGRIFEGLQVSELMVSGGKVVGVST-TGGQFLADETVIAAGVLSA 168


>gi|308188516|ref|YP_003932647.1| hypothetical protein Pvag_3049 [Pantoea vagans C9-1]
 gi|308059026|gb|ADO11198.1| Uncharacterized protein yhiN [Pantoea vagans C9-1]
          Length = 394

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVI+IG G AG   AA A + G    L+
Sbjct: 2  EQFDVIIIGAGAAGLFCAAQAGQRGRRVLLL 32


>gi|307328319|ref|ZP_07607496.1| monooxygenase FAD-binding [Streptomyces violaceusniger Tu 4113]
 gi|306886023|gb|EFN17032.1| monooxygenase FAD-binding [Streptomyces violaceusniger Tu 4113]
          Length = 524

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+V+G G  G  AA   A+ G S  ++        +   N   G  GKG   R ++ LD
Sbjct: 11 DVLVVGAGPTGLTAACELARRGVSVRVV-----DKAAAPFN---GSRGKGLQPRTLEVLD 62

Query: 67 GLMGRVADAAGIQFRVLNV 85
           L          +FR+   
Sbjct: 63 NLGVAGRLITLGRFRMPLR 81


>gi|228958699|ref|ZP_04120413.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228800976|gb|EEM47879.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 436

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|228939580|ref|ZP_04102164.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228972438|ref|ZP_04133047.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228979059|ref|ZP_04139408.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis Bt407]
 gi|228780645|gb|EEM28863.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis Bt407]
 gi|228787260|gb|EEM35230.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228820072|gb|EEM66113.1| phytoene dehydrogenase enzyme [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326940147|gb|AEA16043.1| dehydrogenase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 436

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|229044180|ref|ZP_04191859.1| phytoene dehydrogenase enzyme [Bacillus cereus AH676]
 gi|228725164|gb|EEL76442.1| phytoene dehydrogenase enzyme [Bacillus cereus AH676]
          Length = 436

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|229109867|ref|ZP_04239450.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock1-15]
 gi|228673588|gb|EEL28849.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock1-15]
          Length = 436

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++DV ++GGG AG  A+   AK G    ++  K+S  G           G+G  + +  
Sbjct: 2  NTFDVAIVGGGLAGLTASIYLAKAGKKVIVLE-KSSQFG-----------GRGMTINKNG 49

Query: 64 ALDGLMGRVADAAGIQFRVLN 84
              L        G  F   N
Sbjct: 50 ICMNLGAHALYRGGAAFITFN 70


>gi|225410090|ref|ZP_03761279.1| hypothetical protein CLOSTASPAR_05311 [Clostridium asparagiforme
           DSM 15981]
 gi|225042377|gb|EEG52623.1| hypothetical protein CLOSTASPAR_05311 [Clostridium asparagiforme
           DSM 15981]
          Length = 663

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
           V+VIGGG AGCEAA V A  G    L          +  N   GG  +
Sbjct: 405 VMVIGGGVAGCEAARVLAVRGHKPELF----EKGNRLGGNLIPGGAPE 448


>gi|206895900|ref|YP_002247206.1| thioredoxin-disulfide reductase [Coprothermobacter proteolyticus
          DSM 5265]
 gi|206738517|gb|ACI17595.1| thioredoxin-disulfide reductase [Coprothermobacter proteolyticus
          DSM 5265]
          Length = 309

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +DV ++GGG AG  AA   A+ G   A+ +   
Sbjct: 7  FDVFIVGGGPAGLSAAIYCARNGLRVAVASADI 39


>gi|196003478|ref|XP_002111606.1| hypothetical protein TRIADDRAFT_55813 [Trichoplax adhaerens]
 gi|190585505|gb|EDV25573.1| hypothetical protein TRIADDRAFT_55813 [Trichoplax adhaerens]
          Length = 508

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGS 43
          N+  +V VIG G AG  AA    + G +  L   HK   +G+
Sbjct: 8  NKPLNVAVIGSGLAGISAAWFLTRCGHNVHLYERHKLLGLGA 49


>gi|124026422|ref|YP_001015537.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str.
          NATL1A]
 gi|123961490|gb|ABM76273.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
          str. NATL1A]
          Length = 480

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
          I+  +D+IV+G G+ G +AA  AA+ G   A++       G+     C P+   L     
Sbjct: 4  ISFDFDLIVVGAGYGGFDAAKHAAEAGLKVAIVE-SRDMGGTCVNRGCVPSKALLAASGK 62

Query: 59 VREI 62
          VRE+
Sbjct: 63 VREL 66


>gi|90412753|ref|ZP_01220754.1| hypothetical protein P3TCK_22635 [Photobacterium profundum 3TCK]
 gi|90326328|gb|EAS42747.1| hypothetical protein P3TCK_22635 [Photobacterium profundum 3TCK]
          Length = 403

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV++IG G AG   AA A K G S  ++ H
Sbjct: 9  MANKFDVVIIGAGAAGLMCAAEAGKRGRSVLVVDH 43


>gi|83717016|ref|YP_440148.1| FAD-binding oxidoreductase [Burkholderia thailandensis E264]
 gi|167616854|ref|ZP_02385485.1| oxidoreductase, FAD-binding protein [Burkholderia thailandensis
          Bt4]
 gi|257140778|ref|ZP_05589040.1| oxidoreductase, FAD-binding protein [Burkholderia thailandensis
          E264]
 gi|83650841|gb|ABC34905.1| oxidoreductase, FAD-binding [Burkholderia thailandensis E264]
          Length = 430

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGVSAALNLAERGHSVAVVEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|54307350|ref|YP_128370.1| hypothetical protein PBPRA0129 [Photobacterium profundum SS9]
 gi|46911770|emb|CAG18568.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 395

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   +DV++IG G AG   AA A K G S  ++ H
Sbjct: 1  MANKFDVVIIGAGAAGLMCAAEAGKRGRSVLVVDH 35


>gi|315181739|gb|ADT88652.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B [Vibrio
          furnissii NCTC 11218]
          Length = 441

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M++  YDV VIGGG AG  AA  + + G  T LI  
Sbjct: 1  MMH--YDVAVIGGGIAGYTAAIRSLQAGKKTVLINQ 34


>gi|308271918|emb|CBX28526.1| Alkyl hydroperoxide reductase subunit F [uncultured
          Desulfobacterium sp.]
          Length = 310

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD+I++G G +G  AA  AA+    T L++   
Sbjct: 8  YDIIIVGAGPSGLTAAVYAARKQLKTLLVSKDI 40


>gi|304570587|ref|YP_388558.2| thioredoxin reductase (NADPH) [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
          Length = 307

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          + YD IVIGGG AG  AA    + G S A
Sbjct: 2  KLYDSIVIGGGPAGMTAALYLLRSGVSVA 30


>gi|302383384|ref|YP_003819207.1| amine oxidase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194012|gb|ADL01584.1| amine oxidase [Brevundimonas subvibrioides ATCC 15264]
          Length = 538

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++  DV+++GGGH G   A   A+ G    ++
Sbjct: 1  MADQDRDVVILGGGHNGLVCAFYLARAGLKVTVL 34


>gi|149196158|ref|ZP_01873214.1| hypothetical protein LNTAR_23469 [Lentisphaera araneosa HTCC2155]
 gi|149141005|gb|EDM29402.1| hypothetical protein LNTAR_23469 [Lentisphaera araneosa HTCC2155]
          Length = 502

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDVIVIG G  G  +A   A+ G S  L+   
Sbjct: 43 HYDVIVIGSGLGGMTSANCMARQGHSVLLLEQH 75


>gi|146341932|ref|YP_001206980.1| putative FAD dependent oxidoreductase [Bradyrhizobium sp. ORS278]
 gi|146194738|emb|CAL78763.1| Putative FAD dependent oxidoreductase [Bradyrhizobium sp. ORS278]
          Length = 475

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV V+G G AG   A  AA+ GAS A++
Sbjct: 30 DVCVVGAGLAGLTTALCAARQGASVAVL 57


>gi|157370328|ref|YP_001478317.1| glucose-methanol-choline oxidoreductase [Serratia proteamaculans
          568]
 gi|157322092|gb|ABV41189.1| glucose-methanol-choline oxidoreductase [Serratia proteamaculans
          568]
          Length = 538

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI----THKTSTIGSMSCNPAIGGL 53
          DV+VIG G AG  AA    + GAS  ++      K      +  N    G 
Sbjct: 8  DVVVIGAGIAGSLAALKMVQAGASVLMLESGPEIKRDKAVELFRNSPFKGD 58


>gi|12852664|dbj|BAB29495.1| unnamed protein product [Mus musculus]
          Length = 164

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +VIG GH G  AAA   +LG +TA+ 
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTAVF 63


>gi|27382304|ref|NP_773833.1| opine oxidase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27355475|dbj|BAC52458.1| opine oxidase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 378

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDV V+GGG  G   A    +LG   A++
Sbjct: 1  MSGEYDVAVVGGGLLGSAIAWGLGRLGKKVAVL 33


>gi|148256820|ref|YP_001241405.1| putative FAD dependent oxidoreductase [Bradyrhizobium sp. BTAi1]
 gi|146408993|gb|ABQ37499.1| Putative FAD dependent oxidoreductase [Bradyrhizobium sp. BTAi1]
          Length = 476

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV V+G G AG   A  AA+ GAS A++
Sbjct: 30 DVCVVGAGLAGLTTALCAARQGASVAVL 57


>gi|332520166|ref|ZP_08396630.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044725|gb|EGI80919.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 670

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 31 KRNIDVIVVGTGLAGGSAAATLAELGYNVKAFC 63


>gi|300855312|ref|YP_003780296.1| putative flavoprotein [Clostridium ljungdahlii DSM 13528]
 gi|300435427|gb|ADK15194.1| predicted flavoprotein [Clostridium ljungdahlii DSM 13528]
          Length = 408

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 23/165 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA--- 64
           VIVIGGG +G  AA  AAK      +          +     I G G+ ++    D    
Sbjct: 4   VIVIGGGPSGMMAAINAAKNNDVVLV-----EKNNKLGKKMFISGKGRCNITNSKDISEF 58

Query: 65  -----------LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRL-AMQRE 110
                         L     +     F  L V K    RG R   ++D+    + AM++E
Sbjct: 59  FDYIPRNPNFLYSSLYSFTNNDTINFFNNLKV-KLKVERGDRVFPESDKSSDLIGAMEKE 117

Query: 111 ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           +L ++ +  +  +V  F   +N I S+ +QDNS+++    +L TG
Sbjct: 118 LLRKKVVIKLNSQVIKFICRENRIESVQLQDNSIMKGDYFILCTG 162


>gi|282853202|ref|ZP_06262539.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
           acnes J139]
 gi|282582655|gb|EFB88035.1| pyridine nucleotide-disulphide oxidoreductase [Propionibacterium
           acnes J139]
 gi|314922488|gb|EFS86319.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL001PA1]
 gi|314965567|gb|EFT09666.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL082PA2]
 gi|314982727|gb|EFT26819.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL110PA3]
 gi|315091383|gb|EFT63359.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL110PA4]
 gi|315094318|gb|EFT66294.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL060PA1]
 gi|315105040|gb|EFT77016.1| pyridine nucleotide-disulfide oxidoreductase [Propionibacterium
           acnes HL050PA2]
 gi|327329110|gb|EGE70870.1| NADH dehydrogenase [Propionibacterium acnes HL103PA1]
          Length = 460

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTI 41
           ++++DVI++GGG  G E A   A++   G         T  +
Sbjct: 172 DKTFDVIIVGGGPTGVEMAGTLAEMKSIGIPAIFPGVSTDRV 213


>gi|317053178|ref|YP_004119532.1| FAD dependent oxidoreductase [Pantoea sp. At-9b]
 gi|316953505|gb|ADU72976.1| FAD dependent oxidoreductase [Pantoea sp. At-9b]
          Length = 381

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          M +  +DV ++GGG  GC  A   AK G    ++        +   N
Sbjct: 1  MTSSRFDVCIVGGGVMGCSTALFLAKAGMRVVVVERNALCRSASGVN 47


>gi|256372760|ref|YP_003110584.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009344|gb|ACU54911.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 67/236 (28%), Gaps = 46/236 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G  G E A   + LGA   LI      + S            G LV  + A   
Sbjct: 178 VAIIGAGSIGLELATAYSGLGARVHLIESTPQAVASAPLELT------GALVEHLRASGV 231

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS------QENLDVIQ 121
            +            V + +   +    + Q      ++ + R I +       ENL    
Sbjct: 232 AVALTT-------TVGSAQATTSGWLLQLQGPEGATQVEVDRVIAAVGRRPTTENL---- 280

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG------ 175
                          + +     +    V  T  T  RG+   G +    G         
Sbjct: 281 ---------GLETVGVELGARGEV---VVDATMRTSNRGIWAAGDVT--GGPQYVYVAAA 326

Query: 176 ---DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
               +  N+L +    FD         T   L    +  D+ + Q  D     FSF
Sbjct: 327 QGALAARNALSDGDEHFDDRAIPAVVFTDPPLAQVGLTLDEAQHQGYDAESTTFSF 382


>gi|226360912|ref|YP_002778690.1| sarcosine oxidase beta subunit [Rhodococcus opacus B4]
 gi|226239397|dbj|BAH49745.1| sarcosine oxidase beta subunit [Rhodococcus opacus B4]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  Y          +  +D+IQ  EV GF T+ N ++ +       I   
Sbjct: 168 ATYQPRAGIAKHDYVAWGFARRADEAGIDIIQNCEVTGFVTDGNKVTGVRTTRGD-IAAG 226

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
            V L        +  +  ++     +   P  +L +  ++
Sbjct: 227 QVALCAAGHTSTLTDMLGIRT---PVQSHPLQALVSELLE 263


>gi|222641853|gb|EEE69985.1| hypothetical protein OsJ_29890 [Oryza sativa Japonica Group]
          Length = 71

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAA-KLGASTALI 34
          +DVIV+G G  G  AA  A+ + GA   L+
Sbjct: 15 FDVIVVGAGIMGSCAAYAASTRGGARVLLL 44


>gi|222153238|ref|YP_002562415.1| dihydrolipoamide dehydrogenase [Streptococcus uberis 0140J]
 gi|222114051|emb|CAR42424.1| dihydrolipoamide dehydrogenase [Streptococcus uberis 0140J]
          Length = 585

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 124 LADDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 157


>gi|254489372|ref|ZP_05102575.1| FAD binding domain protein [Roseobacter sp. GAI101]
 gi|214041879|gb|EEB82519.1| FAD binding domain protein [Roseobacter sp. GAI101]
          Length = 413

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI    D  VIG G +GC +A + AK G    ++         +     +G     +++ 
Sbjct: 1   MIPERADFAVIGTGPSGCMSAGLLAKAGFDVVMLERD------VHPRNTVGE----NMIP 50

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           +      ++G   D     F           RG R   D ++ RLA +     +  L V 
Sbjct: 51  DFWKFTDMIGASEDIKKAGFVT--------KRGGRVHWDGQVERLAFRDFGYERPGLHVD 102

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIR 146
           + E               + +N  +R
Sbjct: 103 RDEFDSILVRHAQRLGARLFENVTVR 128


>gi|171315963|ref|ZP_02905191.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ambifaria MEX-5]
 gi|171098867|gb|EDT43658.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Burkholderia ambifaria MEX-5]
          Length = 406

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG  G E AA A + G    +I                       L R +  + G
Sbjct: 148 VAVLGGGFIGLEVAAAARQRGCDVTVI-----------------DPAPRLLQRALPEVVG 190

Query: 68  LMGR-VADAAGIQFRV---LNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVIQG 122
              R + DA G+ F++       +  A  G   + DR ++    +   I    N+++ Q 
Sbjct: 191 AYARQLHDARGVSFQMATLPRAIRRAAGGGAIVETDRGDVPADIVVVGIGVVPNVELAQA 250

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
                +    + +     D ++     V +     L   + I   ++ 
Sbjct: 251 ADLEVDNGIRVDAGCRTADRAIFAAGEVTMHFNPLLGRHVRIESWQVA 298


>gi|188584195|ref|YP_001927640.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium populi BJ001]
 gi|179347693|gb|ACB83105.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium populi BJ001]
          Length = 406

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           +VIGGG  G EAA   A+LG  T L+ H    +     +          LVR  ++A   
Sbjct: 150 VVIGGGLLGLEAAVGLARLGVDTTLV-HVMDRVMERQLD-----HAAARLVRTAMEARGV 203

Query: 68  LMGRVADAAGIQ----FRVLNVKKGPAVRGP 94
            +   AD A I+       L +K G  +   
Sbjct: 204 KVVLSADTAAIEGNGKVERLRMKDGSVIPAD 234


>gi|126741396|ref|ZP_01757069.1| N-methylproline demethylase, putative [Roseobacter sp. SK209-2-6]
 gi|126717513|gb|EBA14242.1| N-methylproline demethylase, putative [Roseobacter sp. SK209-2-6]
          Length = 681

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +V +IG G AG EAA VAA+ G    +   +  
Sbjct: 388 EVAIIGAGPAGLEAARVAAERGHDVIVFEAQPD 420


>gi|125564240|gb|EAZ09620.1| hypothetical protein OsI_31904 [Oryza sativa Indica Group]
          Length = 420

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 6  YDVIVIGGGHAGCEAAAVAA-KLGASTALI 34
          +DVIV+G G  G  AA  A+ + GA   L+
Sbjct: 15 FDVIVVGAGIMGSCAAYAASTRGGARVLLL 44


>gi|21328616|gb|AAM48623.1| geranylgeranyl hydrogenase [uncultured marine proteobacterium]
          Length = 400

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGKGHLVR 60
           +DVIV+GGG +G  AA   A  G    L+      K        C      + +  L  
Sbjct: 7  DFDVIVVGGGPSGATAAHEIALAGHRVLLLERAFRIKPCGGAIPPCMLEEFDIPRSLLKA 66

Query: 61 EID 63
          EI 
Sbjct: 67 EIQ 69


>gi|13430632|gb|AAK25938.1|AF360228_1 putative glutathione reductase [Arabidopsis thaliana]
 gi|14532810|gb|AAK64087.1| putative glutathione reductase [Arabidopsis thaliana]
          Length = 499

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           +  +D+ VIG G  G  AA  +A  GA   +       I     +  IGG+G     +G 
Sbjct: 23  HYDFDLFVIGAGSGGVRAARFSANHGAKVGICELPFHPIS----SEEIGGVGGTCVIRGC 78

Query: 58  LVREIDALDG-LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + ++I        G + DA    + +         +  + + D  L    + + +L+   
Sbjct: 79  VPKKILVYGATYGGELEDAKNYGWEINEKVDFTWKKLLQKKTDEILRLNNIYKRLLANAA 138

Query: 117 LDVIQGE---VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           + + +GE   V     E   I    +          +++ TG+
Sbjct: 139 VKLYEGEGRVVGPNEVEVRQIDGAKIS----YTAKHILIATGS 177


>gi|16272626|ref|NP_438844.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae Rd KW20]
 gi|260581494|ref|ZP_05849304.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
           [Haemophilus influenzae RdAW]
 gi|1169946|sp|P43800|GLPB_HAEIN RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase subunit
           B; Short=Anaerobic G-3-P dehydrogenase subunit B;
           Short=Anaerobic G3Pdhase B
 gi|1573686|gb|AAC22344.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B (glpB)
           [Haemophilus influenzae Rd KW20]
 gi|260091854|gb|EEW75807.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
           [Haemophilus influenzae RdAW]
          Length = 432

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG   A    + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCAIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ +LD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELHLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|328873700|gb|EGG22067.1| hypothetical protein DFA_01957 [Dictyostelium fasciculatum]
          Length = 795

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 5/145 (3%)

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLLKSL 481
           R    R E     +      RL    ++   + + R ++     +     R     L++ 
Sbjct: 254 RFEKERLENERLEQERLEKERLEQERLENERLEKERLEKERIEQERVENERLEQERLENE 313

Query: 482 VLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE--RLQIE 539
            L  + L S  +  ++  K R   E L       + L     +  +     +E  RL+ E
Sbjct: 314 RLELERLESERLEKERLEKERLEKERLEKERLETERLEKERLEKERLEQERLENERLEKE 373

Query: 540 SSYAAYTGRQMIEAKEIKFEEKRLI 564
                   ++ +E + ++  E+  +
Sbjct: 374 RLENERIEQERLEKERVERLEQERL 398



 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 16/179 (8%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +    + RL              ++  ++ +++    + 
Sbjct: 286 EKERLEKERIEQERVENERLEQERLENERL------------ELERLESERLEKERLEKE 333

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
            L+   L  + L +  +  ++  K R   E L       + L +   +  +     +ERL
Sbjct: 334 RLEKERLEKERLETERLEKERLEKERLEQERLENERLEKERLENERIEQERLEKERVERL 393

Query: 537 QIESSYAAYTGR---QMIEAKEIKFEEKRLIPKDF-DYSSLPALSNELKEKLSILKPFN 591
           + E        R   + +E + ++  E+  + K+  +      L  E  E+L   +  N
Sbjct: 394 EQERLEKERVERIEQERLEKERVERLEQERLEKELAERLEQERLEKECIERLEKERLEN 452



 Score = 37.2 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 50/174 (28%), Gaps = 4/174 (2%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRS 476
            K  LE  R+   R E     +      R     ++   + + R ++     +     R 
Sbjct: 226 EKERLENERLEKERLENERLEQERLEKERFEKERLENERLEQERLEKERLEQERLENERL 285

Query: 477 LLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERL 536
             + L               +  +       L   +        +  +  +   L  ERL
Sbjct: 286 EKERLEKERIEQERVENERLEQERLENERLELERLESERLEKERLEKERLEKERLEKERL 345

Query: 537 QIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA--LSNELKEKLSILK 588
           + E        ++ +E + ++ E      +  +   +    L  E  E+L   +
Sbjct: 346 ETERLEKERLEKERLEQERLENERLEK--ERLENERIEQERLEKERVERLEQER 397



 Score = 37.2 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 417 SKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR- 475
            K  +E  R+   R E     +      RL    ++   I + R ++     +     R 
Sbjct: 136 EKERVEQERLENERLEQERIEKESLEKERLETERLEQERIEKERLEKERLENERVEQERL 195

Query: 476 --SLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSL-- 531
               L+   L ++ L    +  ++        E L       + L +   +  +      
Sbjct: 196 EKERLEKERLENERLEKERLEKERLENEHLEKERLENERLEKERLENERLEQERLEKERF 255

Query: 532 VIERLQIESSYAAYTGRQMIEAKEI--KFEEKRLI 564
             ERL+ E        ++ +E + +  +  EK  +
Sbjct: 256 EKERLENERLEQERLEKERLEQERLENERLEKERL 290



 Score = 36.8 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 5/171 (2%)

Query: 422 EPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLR---SLL 478
           E  R+ + R E     +      RL    ++   + + R ++     +     R     L
Sbjct: 316 ELERLESERLEKERLEKERLEKERLEKERLETERLEKERLEKERLEQERLENERLEKERL 375

Query: 479 KSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQI 538
           ++  +  + L    +   +  +              ++       +  +    + ERL+ 
Sbjct: 376 ENERIEQERLEKERVERLEQERLEKERVE-RIEQERLEKERVERLEQERLEKELAERLEQ 434

Query: 539 ESSYAAYTGRQMIEAKEIKFEEKRLIPKD-FDYSSLPALSNELKEKLSILK 588
           E        R   E  E +  E+  + K   +      L  EL E+L   +
Sbjct: 435 ERLEKECIERLEKERLENERLEQERLEKGHVERLEQERLEKELAERLEQER 485


>gi|315426858|dbj|BAJ48479.1| thioredoxin reductase (NADPH) [Candidatus Caldiarchaeum
          subterraneum]
 gi|315428042|dbj|BAJ49630.1| thioredoxin reductase (NADPH) [Candidatus Caldiarchaeum
          subterraneum]
          Length = 328

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +   YDV+VIGGG AG  AA    +    T +I 
Sbjct: 5  MADVYDVVVIGGGPAGYTAAIYTCRANLKTLVIA 38


>gi|315425092|dbj|BAJ46764.1| thioredoxin reductase [Candidatus Caldiarchaeum subterraneum]
          Length = 324

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +   YDV+VIGGG AG  AA    +    T +I 
Sbjct: 1  MADVYDVVVIGGGPAGYTAAIYTCRANLKTLVIA 34


>gi|291568674|dbj|BAI90946.1| pyridine nucleotide-disulphide oxidoreductase [Arthrospira
          platensis NIES-39]
          Length = 484

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YD+++IGG  AG +AA  A+K+    AL+           IG+   +P +        +
Sbjct: 3  DYDIVIIGGTLAGRKAAIKASKMQGRVALLEPDPPPVPGQIIGANRHHPLLQIAKVAKQM 62

Query: 60 REIDALDGLMGRVADA 75
          R++    G+    AD 
Sbjct: 63 RQVSQF-GIGWETADR 77


>gi|281205357|gb|EFA79549.1| hypothetical protein PPL_07600 [Polysphondylium pallidum PN500]
          Length = 1130

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 456 IGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI 515
           I + R ++     +     +  L+   +  + L    +  ++  K R +       +   
Sbjct: 548 IEKERLEKERLEKERLE--KERLEKERVEKERLEKERLEKERLEKERLSKLEKERLE--K 603

Query: 516 QNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
           + L  +  +  +   L  ERL+ E        ++ +  ++++ E                
Sbjct: 604 ERLAKLEKERLEKERLEKERLEKERLEKERLEKERLVLEKLERERLEK----------EN 653

Query: 576 LSNE--LKEKLSILK 588
           L  E   KE+L   +
Sbjct: 654 LEKERLEKERLEKER 668


>gi|271967659|ref|YP_003341855.1| amine oxidase [Streptosporangium roseum DSM 43021]
 gi|270510834|gb|ACZ89112.1| amine oxidase [Streptosporangium roseum DSM 43021]
          Length = 504

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D ++IGGGH G  AAA  A+ G    ++
Sbjct: 1  MSRSRHDAVIIGGGHNGLVAAAYLARAGRKVLVL 34


>gi|270158804|ref|ZP_06187461.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289166401|ref|YP_003456539.1| oxidoreductase with FAD/NAD(P)-binding domain [Legionella
          longbeachae NSW150]
 gi|269990829|gb|EEZ97083.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288859574|emb|CBJ13542.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Legionella longbeachae NSW150]
          Length = 391

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DVI+IG G AG   A  A+K G    +                + G G+ +
Sbjct: 5  DVIIIGAGAAGLMCAIEASKRGRKVLV----LDHANKAGKKILMSGGGRCN 51


>gi|220906989|ref|YP_002482300.1| succinate dehydrogenase flavoprotein subunit [Cyanothece sp. PCC
          7425]
 gi|219863600|gb|ACL43939.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 7425]
          Length = 575

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKL 27
           +DV+++GGG AGC AA    +L
Sbjct: 3  EHDVVIVGGGLAGCRAALEICRL 25


>gi|124023678|ref|YP_001017985.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
          9303]
 gi|123963964|gb|ABM78720.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
          str. MIT 9303]
          Length = 489

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA  G   A++       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAADDGLKVAIVE-SGDMGGTCVNRGCVPSKALLAASGKVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 66 LADAEHLSGFGIHAAPVRFE 85


>gi|48477640|ref|YP_023346.1| geranylgeranyl hydrogenase [Picrophilus torridus DSM 9790]
 gi|48430288|gb|AAT43153.1| geranylgeranyl hydrogenase [Picrophilus torridus DSM 9790]
          Length = 379

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVI++G G AG  AA + +K G     +         + C   +       +VR    ++
Sbjct: 3   DVIIVGAGPAGSYAAYLLSKKGFDVLQLEEHREIGKPVECTGLVSKRVFS-MVRSRSMIN 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            + G        ++  ++  +   +   R Q D+++  +A++     + N   I   V  
Sbjct: 62  KVHGANVYFPNNKYIHVSKNEET-IVMYRDQFDKDVAAMAIENGTDLRINARAIDASVND 120


>gi|194337274|ref|YP_002019068.1| Rieske (2Fe-2S) domain protein [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194309751|gb|ACF44451.1| Rieske (2Fe-2S) domain protein [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 643

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+VIGGG AG  A+   A+ G +  L+
Sbjct: 58 VVVIGGGLAGITASLELARKGFAVTLV 84


>gi|325121102|gb|ADY80625.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Acinetobacter calcoaceticus PHEA-2]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|313835229|gb|EFS72943.1| thioredoxin-disulfide reductase [Propionibacterium acnes
          HL037PA2]
 gi|314929197|gb|EFS93028.1| thioredoxin-disulfide reductase [Propionibacterium acnes
          HL044PA1]
 gi|314970848|gb|EFT14946.1| thioredoxin-disulfide reductase [Propionibacterium acnes
          HL037PA3]
 gi|328905741|gb|EGG25517.1| thioredoxin-disulfide reductase [Propionibacterium sp. P08]
          Length = 350

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          ++  DVI+IG G AG  AA   A+ G    +        G++
Sbjct: 41 DKPRDVIIIGSGPAGYTAAVYTARAGLKPLVFEGSVDAGGAL 82


>gi|306827454|ref|ZP_07460738.1| dihydrolipoyl dehydrogenase [Streptococcus pyogenes ATCC 10782]
 gi|304430334|gb|EFM33359.1| dihydrolipoyl dehydrogenase [Streptococcus pyogenes ATCC 10782]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|299771398|ref|YP_003733424.1| flavoprotein [Acinetobacter sp. DR1]
 gi|298701486|gb|ADI92051.1| flavoprotein [Acinetobacter sp. DR1]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|297208690|ref|ZP_06925118.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886635|gb|EFH25540.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 440

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 100/305 (32%), Gaps = 54/305 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 2   KTYDLIVIGFGEAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIASKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +       NL   
Sbjct: 57  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEV--NLLDQ 112

Query: 121 QGEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             ++A   T  +II     +S++     + +   V  +TG           + +  G + 
Sbjct: 113 HDDIADSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNINYQPKHLVIVGGGYI- 171

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +    + F         L+ G     R D   +                        
Sbjct: 172 ---ALEFASMFANLGSKVTVLERGESFMPREDQDVVA---------------------HA 207

Query: 234 TNRQIECGIT-RTNLETHRIIMENIKHSAI-------YSGDIKSYG--PRYCPSIEDKIV 283
                  GIT  TN+ET  +  +N   +             + + G  P    ++E+  +
Sbjct: 208 ITDLENKGITLHTNVETTELSSDNHHTTVHTNVGNFEADAVLLAIGRKPNTDLALENTDI 267

Query: 284 RFGER 288
             G+R
Sbjct: 268 ELGDR 272


>gi|293609120|ref|ZP_06691423.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829693|gb|EFF88055.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|302384164|ref|YP_003819987.1| geranylgeranyl reductase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194792|gb|ADL02364.1| geranylgeranyl reductase [Brevundimonas subvibrioides ATCC 15264]
          Length = 405

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGKGHLV 59
           ++  ++D +V+GGG +G  AA   A  G +  L        G +  C    GG     L+
Sbjct: 8   IVAETFDCVVVGGGPSGSTAARHLASQGRTVLL----LDRQGRIKPC----GGAIPPRLI 59

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           R+ D  D L+   A+ A +          P   G     +RE +   ++    
Sbjct: 60  RDFDIPDSLICAKANEARMIAPSDRRVHMPIEGGYVGMVNREAFDEWLRARAE 112


>gi|262280125|ref|ZP_06057910.1| oxidoreductase [Acinetobacter calcoaceticus RUH2202]
 gi|262260476|gb|EEY79209.1| oxidoreductase [Acinetobacter calcoaceticus RUH2202]
          Length = 421

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 23 MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 75


>gi|260555671|ref|ZP_05827891.1| oxidoreductase [Acinetobacter baumannii ATCC 19606]
 gi|260410582|gb|EEX03880.1| oxidoreductase [Acinetobacter baumannii ATCC 19606]
          Length = 421

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 23 MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 75


>gi|260551011|ref|ZP_05825216.1| flavoprotein [Acinetobacter sp. RUH2624]
 gi|260405959|gb|EEW99446.1| flavoprotein [Acinetobacter sp. RUH2624]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|251782652|ref|YP_002996955.1| dihydrolipoamide dehydrogenase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391282|dbj|BAH81741.1| dihydrolipoamide dehydrogenase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127467|gb|ADX24764.1| dihydrolipoamide dehydrogenase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|239501271|ref|ZP_04660581.1| flavoprotein [Acinetobacter baumannii AB900]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|213156558|ref|YP_002318219.1| hypothetical protein AB57_0822 [Acinetobacter baumannii AB0057]
 gi|215484497|ref|YP_002326732.1| HI0933-like family protein [Acinetobacter baumannii AB307-0294]
 gi|301346906|ref|ZP_07227647.1| HI0933-like family protein [Acinetobacter baumannii AB056]
 gi|301511513|ref|ZP_07236750.1| HI0933-like family protein [Acinetobacter baumannii AB058]
 gi|301595891|ref|ZP_07240899.1| HI0933-like family protein [Acinetobacter baumannii AB059]
 gi|332852125|ref|ZP_08433952.1| flavoprotein family protein [Acinetobacter baumannii 6013150]
 gi|332867523|ref|ZP_08437676.1| flavoprotein family protein [Acinetobacter baumannii 6013113]
 gi|213055718|gb|ACJ40620.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213988153|gb|ACJ58452.1| HI0933-like family protein [Acinetobacter baumannii AB307-0294]
 gi|332729497|gb|EGJ60836.1| flavoprotein family protein [Acinetobacter baumannii 6013150]
 gi|332733940|gb|EGJ65085.1| flavoprotein family protein [Acinetobacter baumannii 6013113]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|254472778|ref|ZP_05086177.1| opine oxidase subunit A [Pseudovibrio sp. JE062]
 gi|211958242|gb|EEA93443.1| opine oxidase subunit A [Pseudovibrio sp. JE062]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +D+ +IG G  G  AA  AA+ GAS  ++
Sbjct: 1  MTEIFDLAIIGAGPGGMSAALQAAEFGASVVVL 33


>gi|288818725|ref|YP_003433073.1| fumarate reductase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|197724759|dbj|BAG70309.1| fumarate reductase, A subunit [Hydrogenobacter thermophilus]
 gi|288788125|dbj|BAI69872.1| fumarate reductase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308752312|gb|ADO45795.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Hydrogenobacter thermophilus TK-6]
          Length = 568

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-- 60
           R+YD+++IG G AG   A   A+      A+++    T               G++++  
Sbjct: 2   RAYDIVIIGAGGAGLRTAIECARDPNIKVAVVSKVYPTRSHTGAAQGGVNAALGNVIKDD 61

Query: 61  --EIDALDGLMGR--VADAAGIQFRVLNV--------------KKGPAVRG--------- 93
             E+ A D + G   +AD   + F   N                + P  R          
Sbjct: 62  SPEMHAYDTIKGSDFLADQDAVLFMCENAPDVIYELDRWGVPFSRLPDGRIAQRPFGGAS 121

Query: 94  -PRTQADRELYRLAMQREILSQ----ENLDVI-QGEVAGFNTEKNIISSIVMQDNS---- 143
            PRT    +     +   +  Q    EN+D   +          + +  + + D      
Sbjct: 122 FPRTVFSADRTGHVILHTLFEQALSKENIDFYNEFFFIDLLHNGHRVKGVSVYDIKNGEV 181

Query: 144 -MIRCSTVVLTTGTFLR 159
             ++   VV+ TG F R
Sbjct: 182 LTLKAKAVVIATGGFAR 198


>gi|254427130|ref|ZP_05040837.1| FAD dependent oxidoreductase, putative [Alcanivorax sp. DG881]
 gi|196193299|gb|EDX88258.1| FAD dependent oxidoreductase, putative [Alcanivorax sp. DG881]
          Length = 541

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +N  YD IVIG G  G  AAA  +K+G    +    
Sbjct: 20 LNGPYDAIVIGSGIGGLTAAACLSKMGKKVVVFEQH 55


>gi|184157050|ref|YP_001845389.1| flavoprotein [Acinetobacter baumannii ACICU]
 gi|332872625|ref|ZP_08440593.1| flavoprotein family protein [Acinetobacter baumannii 6014059]
 gi|183208644|gb|ACC56042.1| predicted flavoprotein [Acinetobacter baumannii ACICU]
 gi|322506949|gb|ADX02403.1| flavoprotein [Acinetobacter baumannii 1656-2]
 gi|323516816|gb|ADX91197.1| oxidoreductase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739154|gb|EGJ70013.1| flavoprotein family protein [Acinetobacter baumannii 6014059]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|169634162|ref|YP_001707898.1| oxidoreductase [Acinetobacter baumannii SDF]
 gi|169152954|emb|CAP01999.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Acinetobacter baumannii]
          Length = 421

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 23 MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 75


>gi|169797037|ref|YP_001714830.1| oxidoreductase [Acinetobacter baumannii AYE]
 gi|169149964|emb|CAM87858.1| putative oxidoreductase with FAD/NAD(P)-binding domain
          [Acinetobacter baumannii AYE]
          Length = 421

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 23 MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 75


>gi|167838927|ref|ZP_02465704.1| oxidoreductase [Burkholderia thailandensis MSMB43]
          Length = 430

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          DV VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DVCVIGAGLTGVSAALNLAERGHSVAVVEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|166367916|ref|YP_001660189.1| putative hydroxyacylglutathione hydrolase [Microcystis aeruginosa
           NIES-843]
 gi|166090289|dbj|BAG04997.1| putative hydroxyacylglutathione hydrolase [Microcystis aeruginosa
           NIES-843]
          Length = 716

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
            + ++D+ +IGGG +G     V A L     T L          +    A G    GHL 
Sbjct: 9   FSATFDIAIIGGGFSGS---LVTANLLRDTGTPLSIALIERRKPLGTGIAYGTRDSGHL- 64

Query: 60  REIDALDGLMGRVAD--AAGIQFRVLN--VKKGPAVRGPRTQADRELYRLAMQREI-LSQ 114
             ++   G M    D     + +   N      PA   PR      +Y   ++  +  ++
Sbjct: 65  --LNIPAGKMSAFEDDPEHFLHWLADNGYRSIDPASFVPRL-----VYGKYIRSILEEAR 117

Query: 115 EN------LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
           +N      L+           +    + I ++    I  + VVL  G F
Sbjct: 118 DNAIADHRLETFTDAAIDLVLDGEKAT-ITLKGGKKISAAKVVLALGNF 165


>gi|149914077|ref|ZP_01902609.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseobacter sp. AzwK-3b]
 gi|149812361|gb|EDM72192.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Roseobacter sp. AzwK-3b]
          Length = 400

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
           M    YD++V GGG AG  AAAV    G S   +            GS     A     +
Sbjct: 1   MSTAEYDILVSGGGVAGLTAAAVFGTAGFSVLCVDPAPPITARDAAGSDLRTTAFLQPAR 60

Query: 56  GHLVREI-------DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
             L R          A    + R+ DA G Q +    K+  A           L    ++
Sbjct: 61  QLLDRAGLWDRLAPHAASLQIMRIVDAGGKQAKPRITKEFDAADISDQPFGWNLPNWLLR 120

Query: 109 RE----ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           RE    + S ++++   G        +   + + + D++ +RC  V+   G
Sbjct: 121 REMVAHLDSLDSVEFRPGVGVASLVTRETQAHVGLSDSTKLRCRLVIAADG 171


>gi|139473841|ref|YP_001128557.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes str.
           Manfredo]
 gi|134272088|emb|CAM30332.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes str.
           Manfredo]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|126640830|ref|YP_001083814.1| putative oxidoreductase [Acinetobacter baumannii ATCC 17978]
 gi|126386714|gb|ABO11212.1| putative oxidoreductase [Acinetobacter baumannii ATCC 17978]
          Length = 399

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M N   DVIV+G G +G   AA AAK G S  +          +     + G GK +
Sbjct: 1  MSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLI----LEKANKIGKKILMSGGGKCN 53


>gi|91785962|ref|YP_546914.1| BFD-like protein [Polaromonas sp. JS666]
 gi|91695187|gb|ABE42016.1| BFD-like (2Fe-2S)-binding region [Polaromonas sp. JS666]
          Length = 458

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGAS 30
          VIV+G G AG  AA   A+ G  
Sbjct: 5  VIVVGAGPAGIRAAQALAEAGLR 27


>gi|73538644|ref|YP_299011.1| NADH:-lavin oxidoreductase/NADH oxidase [Ralstonia eutropha JMP134]
 gi|72121981|gb|AAZ64167.1| NADH:flavin oxidoreductase/NADH oxidase:HI0933-like protein
           [Ralstonia eutropha JMP134]
          Length = 687

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L    T 
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNTE 423


>gi|19746013|ref|NP_607149.1| dihydrolipoamide dehydrogenase, component E3 [Streptococcus
           pyogenes MGAS8232]
 gi|19748178|gb|AAL97648.1| putative dihydrolipoamide dehydrogenase, component E3
           [Streptococcus pyogenes MGAS8232]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|15675028|ref|NP_269202.1| putative dihydrolipoamide dehydrogenase, component E3
           [Streptococcus pyogenes M1 GAS]
 gi|71910568|ref|YP_282118.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS5005]
 gi|13622179|gb|AAK33923.1| putative dihydrolipoamide dehydrogenase, component E3
           [Streptococcus pyogenes M1 GAS]
 gi|71853350|gb|AAZ51373.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS5005]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|49485460|ref|YP_042681.1| pyridine nucleotide-disulphide oxidoreductase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243903|emb|CAG42328.1| pyridine nucleotide-disulphide oxidoreductase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 440

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 100/305 (32%), Gaps = 54/305 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 2   KTYDLIVIGFGEAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIASKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +       NL   
Sbjct: 57  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEV--NLLDQ 112

Query: 121 QGEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             ++A   T  +II     +S++     + +   V  +TG           + +  G + 
Sbjct: 113 HDDIADSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNINYQPKHLVIVGGGYI- 171

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +    + F         L+ G     R D   +                        
Sbjct: 172 ---ALEFASMFANLGSKVTVLERGESFMPREDQDVVA---------------------HA 207

Query: 234 TNRQIECGIT-RTNLETHRIIMENIKHSAI-------YSGDIKSYG--PRYCPSIEDKIV 283
                  GIT  TN+ET  +  +N   +             + + G  P    ++E+  +
Sbjct: 208 ITDLENKGITLHTNVETTELSSDNHHTTVHTNVGNFEADAVLLAIGRKPNTDLALENTDI 267

Query: 284 RFGER 288
             G+R
Sbjct: 268 ELGDR 272


>gi|21282278|ref|NP_645366.1| hypothetical protein MW0549 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912781|ref|ZP_07130223.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21203715|dbj|BAB94414.1| MW0549 [Staphylococcus aureus subsp. aureus MW2]
 gi|300885885|gb|EFK81088.1| pyridine nucleotide-disulfide reductase [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 440

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 100/305 (32%), Gaps = 54/305 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  IG +    LV    
Sbjct: 2   KTYDLIVIGFGEAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--IGCIASKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  +A+  +   V+N    K   +       D   ++   +       NL   
Sbjct: 57  --DGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEV--NLLDQ 112

Query: 121 QGEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
             ++A   T  +II     +S++     + +   V  +TG           + +  G + 
Sbjct: 113 HDDIADSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNINYQPKHLVIVGGGYI- 171

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
              +    + F         L+ G     R D   +                        
Sbjct: 172 ---ALEFASMFANLGSKVTVLERGESFMPREDQDVVA---------------------HA 207

Query: 234 TNRQIECGIT-RTNLETHRIIMENIKHSAI-------YSGDIKSYG--PRYCPSIEDKIV 283
                  GIT  TN+ET  +  +N   +             + + G  P    ++E+  +
Sbjct: 208 ITDLENKGITLHTNVETTELSSDNHHTTVHTNVGNFEADAVLLAIGRKPNTDLALENTDI 267

Query: 284 RFGER 288
             G+R
Sbjct: 268 ELGDR 272


>gi|21910200|ref|NP_664468.1| putative dihydrolipoamide dehydrogenase component E3 [Streptococcus
           pyogenes MGAS315]
 gi|28896101|ref|NP_802451.1| dihydrolipoamide dehydrogenase, component E3 [Streptococcus
           pyogenes SSI-1]
 gi|71903399|ref|YP_280202.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS6180]
 gi|94992325|ref|YP_600424.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS2096]
 gi|94994303|ref|YP_602401.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10750]
 gi|209559343|ref|YP_002285815.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes NZ131]
 gi|21904394|gb|AAM79271.1| putative dihydrolipoamide dehydrogenase component E3 [Streptococcus
           pyogenes MGAS315]
 gi|28811351|dbj|BAC64284.1| putative dihydrolipoamide dehydrogenase, component E3
           [Streptococcus pyogenes SSI-1]
 gi|71802494|gb|AAX71847.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS6180]
 gi|94545833|gb|ABF35880.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS2096]
 gi|94547811|gb|ABF37857.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS10750]
 gi|209540544|gb|ACI61120.1| Dihydrolipoamide dehydrogenase [Streptococcus pyogenes NZ131]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|56808318|ref|ZP_00366080.1| COG1249: Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Streptococcus pyogenes M49 591]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|332558406|ref|ZP_08412728.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides WS8N]
 gi|332276118|gb|EGJ21433.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides WS8N]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G   A   A+LG + A++       I    G +     +     
Sbjct: 1   MPAKSFDMIVIGAGPGGYVCAIRGAQLGLNVAIVERENLGGICLNWGCIPTKAMLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL             V+   +G A +     A            ++ + 
Sbjct: 61  YHLMHRAKEF-GLKAEGI--GYDLGAVVKRSRGVAKQLSSGVA-----------HLMKKN 106

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            + V+ G+       K  +S +     +  +   ++VL TG   R +
Sbjct: 107 RITVVMGDAT--LAGKGRVS-VRTDKGTEELEAKSIVLATGARAREL 150


>gi|331019496|gb|EGH99552.1| sarcosine oxidase, alpha subunit [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 805

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 2   INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
            +++Y   D+ VIG G AG +AA  A   GA   LI  +    GS+
Sbjct: 160 YDKAYLFTDLAVIGAGPAGLQAALTATNAGAQVLLIEQQPILGGSL 205


>gi|323486828|ref|ZP_08092146.1| hypothetical protein HMPREF9474_03897 [Clostridium symbiosum
           WAL-14163]
 gi|323399841|gb|EGA92221.1| hypothetical protein HMPREF9474_03897 [Clostridium symbiosum
           WAL-14163]
          Length = 652

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL------ITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           V+V GGG  G EAA  AA+ G +  L      +         +S    I    K  ++R 
Sbjct: 394 VLVAGGGPGGMEAAITAARRGHNVILCEKSDHLAANLDYSKQLSFKKDIVEFLKSMMLRV 453

Query: 62  ID 63
             
Sbjct: 454 QR 455


>gi|313900349|ref|ZP_07833843.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp.
          HGF2]
 gi|312954898|gb|EFR36572.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp.
          HGF2]
          Length = 420

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIV+GGG AG  +A  A K GA   LI
Sbjct: 2  KYDVIVVGGGPAGLASALEAWKQGAKHILI 31


>gi|307592116|ref|YP_003899707.1| amine oxidase [Cyanothece sp. PCC 7822]
 gi|306985761|gb|ADN17641.1| amine oxidase [Cyanothece sp. PCC 7822]
          Length = 496

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +VIGGG AG  AA   AK G  + ++  K   +G ++      G
Sbjct: 21 VVIGGGPAGLTAAYQLAKHGLKSVVLE-KADKVGGIARTETYKG 63


>gi|282853815|ref|ZP_06263152.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes J139]
 gi|282583268|gb|EFB88648.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes J139]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +           L+   
Sbjct: 61  HIVTKEAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKITEFNGWGELTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L G +   K +I +
Sbjct: 120 ------KAISVKDSDGKVTDEITFDNAIIAVGSVVKTLPGTQLSGRVVTYKEQILS 169


>gi|295677003|ref|YP_003605527.1| 2,4-dienoyl-CoA reductase (NADPH) [Burkholderia sp. CCGE1002]
 gi|295436846|gb|ADG16016.1| 2,4-dienoyl-CoA reductase (NADPH) [Burkholderia sp. CCGE1002]
          Length = 680

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           + V+G G AG  AA +AA  G    L      T+G    N A+   GK      I     
Sbjct: 380 IAVVGAGPAGLSAATLAASRGHRVTLFEAS-DTLGG-QFNLAMRVPGKEEFSETIRYFGS 437

Query: 68  LMGRVADAAGIQFRV 82
            + R      +  RV
Sbjct: 438 QLQRHRVDVRLGTRV 452


>gi|295690829|ref|YP_003594522.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Caulobacter segnis ATCC 21756]
 gi|295432732|gb|ADG11904.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Caulobacter segnis ATCC 21756]
          Length = 313

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  YD IV+G G AG  AA    +    T ++    S    +  +    G   G     
Sbjct: 11 YDTPYDAIVVGAGPAGLTAATYLGRFHRKTLVLDGGMSRASWIPESHNTPGFPHGV---G 67

Query: 62 IDALDGLMGRVADAAGIQFRVLNVK 86
           +AL   +   AD  G Q R    +
Sbjct: 68 GEALLARLREQADRYGAQRRPGRAR 92


>gi|228941694|ref|ZP_04104241.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar berliner ATCC 10792]
 gi|228974620|ref|ZP_04135186.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar thuringiensis str. T01001]
 gi|228981215|ref|ZP_04141515.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis Bt407]
 gi|228778415|gb|EEM26682.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis Bt407]
 gi|228785023|gb|EEM33036.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar thuringiensis str. T01001]
 gi|228817906|gb|EEM63984.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar berliner ATCC 10792]
 gi|326942300|gb|AEA18196.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar chinensis CT-43]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|229163504|ref|ZP_04291455.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          R309803]
 gi|228620073|gb|EEK76948.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          R309803]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|297201604|ref|ZP_06919001.1| 3-ketosteroid-delta-1-dehydrogenase [Streptomyces sviceus ATCC
          29083]
 gi|297147928|gb|EDY55058.2| 3-ketosteroid-delta-1-dehydrogenase [Streptomyces sviceus ATCC
          29083]
          Length = 576

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +YDV+VIG G AG  AA  A K G ST ++             P  GG  
Sbjct: 35 TYDVVVIGSGAAGMTAALTAVKQGLSTVVLE----------KAPTFGGSA 74


>gi|254515431|ref|ZP_05127492.1| putative NADH oxidase [gamma proteobacterium NOR5-3]
 gi|219677674|gb|EED34039.1| putative NADH oxidase [gamma proteobacterium NOR5-3]
          Length = 661

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG EAA  AA  G    +I
Sbjct: 389 VLVVGAGIAGLEAAHTAAARGHRVTVI 415


>gi|170697332|ref|ZP_02888425.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
 gi|170137786|gb|EDT06021.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 46 DVVVIGGGFTGLSAALALAQRGVSVVVL 73


>gi|163760097|ref|ZP_02167180.1| dihydrolipoamide dehydrogenase [Hoeflea phototrophica DFL-43]
 gi|162282496|gb|EDQ32784.1| dihydrolipoamide dehydrogenase [Hoeflea phototrophica DFL-43]
          Length = 481

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MANNYDVIIIGSGPGGYIAAIRAAQLGLKTAVV 33


>gi|94988500|ref|YP_596601.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS9429]
 gi|94542008|gb|ABF32057.1| dihydrolipoamide dehydrogenase [Streptococcus pyogenes MGAS9429]
          Length = 587

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 127 DDEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|77463526|ref|YP_353030.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides 2.4.1]
 gi|77387944|gb|ABA79129.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides 2.4.1]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G   A   A+LG + A++       I    G +     +     
Sbjct: 5   MPAKSFDMIVIGAGPGGYVCAIRGAQLGLNVAIVERENLGGICLNWGCIPTKAMLRSAEV 64

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL             V+   +G A +     A            ++ + 
Sbjct: 65  YHLMHRAKEF-GLKAEGI--GYDLGAVVKRSRGVAKQLSSGVA-----------HLMKKN 110

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            + V+ G+       K  +S +     +  +   ++VL TG   R +
Sbjct: 111 RITVVMGDAT--LAGKGRVS-VRTDKGTEELEAKSIVLATGARAREL 154


>gi|75762578|ref|ZP_00742431.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar israelensis ATCC 35646]
 gi|74489940|gb|EAO53303.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar israelensis ATCC 35646]
          Length = 259

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|134291797|ref|YP_001115566.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
 gi|134134986|gb|ABO59311.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
          Length = 425

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 27 DVVVIGGGFTGLSAALALAQRGVSVVVL 54


>gi|46120466|ref|XP_385056.1| hypothetical protein FG04880.1 [Gibberella zeae PH-1]
          Length = 737

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          N  YDVIV+G G+ G  AA  AA  G    LI  +   IG  S +  I G
Sbjct: 35 NTKYDVIVVGAGYCGLTAARDAAIAGLKVLLIEAR-DRIGGRSWSSNIEG 83


>gi|330504442|ref|YP_004381311.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Pseudomonas
           mendocina NK-01]
 gi|328918728|gb|AEB59559.1| 5-methylaminomethyl-2-thiouridine methyltransferase [Pseudomonas
           mendocina NK-01]
          Length = 653

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIG G AGC  AA  A  G    ++          S NP       G L  ++ A    
Sbjct: 259 VVIGAGLAGCATAASLAARGWRVTVLERHDDIAREASGNPQ------GVLYLKLSAHGTA 312

Query: 69  MGRVADAAGIQFRVL 83
           + R+  A     R L
Sbjct: 313 LSRLIVAGFGHTRRL 327


>gi|319779903|ref|YP_004139379.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317165791|gb|ADV09329.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 299

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 16/98 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ V+GG  AG  AA   A+ G    +       I +            G L  +  A
Sbjct: 2   QYDLAVVGGSFAGLSAAIQVARAGRKVLV-------IDAGRPRNRFAEHSHGFLGHDGRA 54

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
              ++    D A  Q         PA R    +AD+ L
Sbjct: 55  PGAIL----DDARRQLLAY-----PAARVVDGRADKAL 83


>gi|313891351|ref|ZP_07824967.1| pyridine nucleotide-disulfide oxidoreductase [Dialister
           microaerophilus UPII 345-E]
 gi|313120126|gb|EFR43302.1| pyridine nucleotide-disulfide oxidoreductase [Dialister
           microaerophilus UPII 345-E]
          Length = 466

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 76/465 (16%), Positives = 137/465 (29%), Gaps = 93/465 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----------HKTSTIGS-------- 43
           ++  YDVI+IG G AG   A   AK   S  ++                           
Sbjct: 1   MSGIYDVIIIGAGPAGIFTALELAKSNFSVLIVEKGHDIRKRVKINKDRNAPPSEKRKNI 60

Query: 44  --------------MSCNPAIGG-----LGKGHLVREIDALDGLMGRV--------ADAA 76
                         ++     GG     + KG L + I  +D +  +          D  
Sbjct: 61  VCGWGGAGAFSDGKLTLTTEYGGNLDDYMNKGELSKLISYVDSVYCKFGGANRKVYGDEF 120

Query: 77  GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-----NLDVIQG-EVAGFNTE 130
                 L  K   A         R L        + +       N++V+   EV      
Sbjct: 121 QDDLHELKRKAASADLALIPARIRHLGTDVNADILANMRDALPSNVEVLCDTEVEDVLHP 180

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
           K   +  ++          +V   G    G           G    + +  +    ++ +
Sbjct: 181 KEDGTLGIIAGGKTYLSKYLVAAPG--REGAEWFNNSVHKMGIHTRANAVDIG---VRVE 235

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-------------MTDKITNRQ 237
                 +  T    + K + + K+     D+R+  F               +     +  
Sbjct: 236 MPAETFEPITKICYESKLVYFSKS----FDDRVRTFCMNPYGFVVTENNGGLQTVNGHSF 291

Query: 238 IECGITRTNLE--THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                  TN      +   +       Y   I +            + R G+ R+G +  
Sbjct: 292 AYKKSQNTNFAILVSKKFTKPFNEPIAYGKYIATLANMLGGG--PIVQRLGDLRDGRRST 349

Query: 295 LEPE--GLNTDVVYPNGISTALPEEIQHQFIRTIPG-LEKVNIIRPG--------YAIEY 343
            E    GL    + P+     L   + ++F++ I    E ++++ PG        Y +E 
Sbjct: 350 EERIKRGLVNPTM-PSATPGDLSLVLPYRFLKDIEEMFEALDVVAPGANSRHTLLYGVEV 408

Query: 344 DYINPK-ELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAG 386
            + + + EL   LET  I   F  G   G T G  +A+A G+V  
Sbjct: 409 KFYSSRPELSDKLET-AIPNFFAIGDGAGITRGLVQASAAGVVVA 452


>gi|302385929|ref|YP_003821751.1| dihydrolipoamide dehydrogenase [Clostridium saccharolyticum WM1]
 gi|302196557|gb|ADL04128.1| dihydrolipoamide dehydrogenase [Clostridium saccharolyticum WM1]
          Length = 470

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           ++  YD++VIG G  G  AA  AAKLG  T LI       G+     C PA   L    L
Sbjct: 1   MDVIYDLLVIGAGPGGYVAAIKAAKLGMKTGLIE-NREVGGTCLNRGCVPAKALLHAAKL 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            +E+ + +       + +    +VL+  K       R   ++ L                
Sbjct: 60  YQEVLSGERFGIVSKEVSYDYGKVLSY-KNETSESLRLGVEQLLKGNK------------ 106

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMI-RCSTVVLTTGT 156
           + Q    G   +   +  +  ++   I +   ++L TG+
Sbjct: 107 IEQIHGTGTLIKDGRVR-VKTEEEERILQAKNILLATGS 144


>gi|302760225|ref|XP_002963535.1| hypothetical protein SELMODRAFT_404807 [Selaginella moellendorffii]
 gi|300168803|gb|EFJ35406.1| hypothetical protein SELMODRAFT_404807 [Selaginella moellendorffii]
          Length = 922

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            R +D +V+GGGH G  AAA  A+ G + A++
Sbjct: 368 QRKWDALVVGGGHNGLTAAAYLARAGLAVAVL 399


>gi|289549600|ref|YP_003470504.1| Dihydrolipoamide dehydrogenase of acetoin dehydrogenase
          [Staphylococcus lugdunensis HKU09-01]
 gi|289179132|gb|ADC86377.1| Dihydrolipoamide dehydrogenase of acetoin dehydrogenase
          [Staphylococcus lugdunensis HKU09-01]
          Length = 450

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
          +   YDVI+IG G  G  +A  AA+LG + A+I    +      +G +     +    K 
Sbjct: 1  MTEKYDVIIIGAGPGGYVSAIRAAQLGKTVAIIEKNNAGGTCLNVGCIPSKTLLEHGKKV 60

Query: 57 HLVREIDALD 66
          H ++  D   
Sbjct: 61 HDIQSADEWG 70


>gi|228910340|ref|ZP_04074156.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis IBL 200]
 gi|228849292|gb|EEM94130.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis IBL 200]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|227831517|ref|YP_002833297.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.S.2.15]
 gi|227457965|gb|ACP36652.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.S.2.15]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  +++D I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTFDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|254444325|ref|ZP_05057801.1| FAD dependent oxidoreductase, putative [Verrucomicrobiae
          bacterium DG1235]
 gi|198258633|gb|EDY82941.1| FAD dependent oxidoreductase, putative [Verrucomicrobiae
          bacterium DG1235]
          Length = 418

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD I++GGG AG  AA    K G +  L+      +G    +    G    H  + +   
Sbjct: 9  YDTIIVGGGLAGLSAALELQKSGKNILLLEAS-DRVGGRLRSDLHQGFILDHGFQVMLTA 67

Query: 66 DGLMGRVADAAGIQFRVLN 84
               R+ D + ++ +  +
Sbjct: 68 YSECQRLLDYSALKLKTFD 86


>gi|218899672|ref|YP_002448083.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          G9842]
 gi|228903034|ref|ZP_04067173.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis IBL 4222]
 gi|228967610|ref|ZP_04128633.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar sotto str. T04001]
 gi|218543968|gb|ACK96362.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          G9842]
 gi|228792101|gb|EEM39680.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar sotto str. T04001]
 gi|228856627|gb|EEN01148.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis IBL 4222]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|57506241|ref|ZP_00372159.1| succinate dehydrogenase flavoprotein Cj0409 [Campylobacter
          upsaliensis RM3195]
 gi|57015468|gb|EAL52264.1| succinate dehydrogenase flavoprotein Cj0409 [Campylobacter
          upsaliensis RM3195]
          Length = 663

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  +   G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLGNGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|325920386|ref|ZP_08182317.1| succinate dehydrogenase subunit A [Xanthomonas gardneri ATCC
          19865]
 gi|325549133|gb|EGD20056.1| succinate dehydrogenase subunit A [Xanthomonas gardneri ATCC
          19865]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|325917573|ref|ZP_08179773.1| succinate dehydrogenase subunit A [Xanthomonas vesicatoria ATCC
          35937]
 gi|325536207|gb|EGD08003.1| succinate dehydrogenase subunit A [Xanthomonas vesicatoria ATCC
          35937]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|326404269|ref|YP_004284351.1| succinate dehydrogenase flavoprotein subunit [Acidiphilium
          multivorum AIU301]
 gi|325051131|dbj|BAJ81469.1| succinate dehydrogenase flavoprotein subunit [Acidiphilium
          multivorum AIU301]
          Length = 603

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+ +YDVIV+G G +G  A     + G  TA I+
Sbjct: 14 IIDHTYDVIVVGAGGSGLRATLGMGQAGLKTACIS 48


>gi|323475833|gb|ADX86439.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus REY15A]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  +++D I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTFDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|319786902|ref|YP_004146377.1| succinate dehydrogenase, flavoprotein subunit [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317465414|gb|ADV27146.1| succinate dehydrogenase, flavoprotein subunit [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|294624873|ref|ZP_06703530.1| succinate dehydrogenase [Xanthomonas fuscans subsp. aurantifolii
          str. ICPB 11122]
 gi|292600832|gb|EFF44912.1| succinate dehydrogenase [Xanthomonas fuscans subsp. aurantifolii
          str. ICPB 11122]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|293570569|ref|ZP_06681621.1| conserved protein YtfP [Enterococcus faecium E980]
 gi|291609357|gb|EFF38627.1| conserved protein YtfP [Enterococcus faecium E980]
          Length = 373

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 10/53 (18%)

Query: 346 INPKELFPTLETKKISGLFLAGQI---NGTTG---YEEAAAQGLVAGINSARK 392
           I+PK    TLE+K I GL+ AG++   NG TG      A A G VAG+N+ ++
Sbjct: 324 IHPK----TLESKIIDGLYFAGELLDVNGYTGGFNITAAFATGHVAGMNAGQR 372


>gi|289669026|ref|ZP_06490101.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. musacearum NCPPB4381]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|289665885|ref|ZP_06487466.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. vasculorum NCPPB702]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|285018594|ref|YP_003376305.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          albilineans GPE PC73]
 gi|283473812|emb|CBA16314.1| putative succinate dehydrogenase flavoprotein subunit
          [Xanthomonas albilineans]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|238927644|ref|ZP_04659404.1| thioredoxin-disulfide reductase [Selenomonas flueggei ATCC 43531]
 gi|238884569|gb|EEQ48207.1| thioredoxin-disulfide reductase [Selenomonas flueggei ATCC 43531]
          Length = 310

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+I+IG G AG  AA  A ++   T ++
Sbjct: 9  DIIIIGAGMAGLTAALYAGRMNLRTLVL 36


>gi|258406085|ref|YP_003198827.1| quinone-interacting membrane-bound oxidoreductase complex subunit
          A [Desulfohalobium retbaense DSM 5692]
 gi|257798312|gb|ACV69249.1| quinone-interacting membrane-bound oxidoreductase, subunit A
          [Desulfohalobium retbaense DSM 5692]
          Length = 411

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 20/83 (24%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG------- 51
          ++VIGGG AG  AA  AA++G    L+           + +      C P+ G       
Sbjct: 5  ILVIGGGFAGITAALEAAEVGHEVYLVEKGPFLGGRVMQLNKYFPKLCPPSCGLEIQFQR 64

Query: 52 ----GLGKGHLVREIDALDGLMG 70
                 K   + E+ A+ G  G
Sbjct: 65 IKNNKNIKCLTLSEVTAVSGQAG 87


>gi|188576493|ref|YP_001913422.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae PXO99A]
 gi|188520945|gb|ACD58890.1| succinate dehydrogenase, flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae PXO99A]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|170742402|ref|YP_001771057.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Methylobacterium sp. 4-46]
 gi|168196676|gb|ACA18623.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Methylobacterium sp. 4-46]
          Length = 330

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-- 64
          D ++IGGG AG  AA   A+ G    ++    S    +  +  I     G   +EI A  
Sbjct: 14 DCLIIGGGPAGLTAALYLARFGRRFLVVDAGDSRASWIPTSHNIPVFADGISGQEILARQ 73

Query: 65 ------LDGLMGR 71
                  G M R
Sbjct: 74 REHVARYGGQMVR 86


>gi|188991443|ref|YP_001903453.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. campestris str. B100]
 gi|167733203|emb|CAP51401.1| succinate dehydrogenase (ubiquinone) flavoprotein subunit
          [Xanthomonas campestris pv. campestris]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|166712286|ref|ZP_02243493.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzicola BLS256]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|149183975|ref|ZP_01862349.1| oxidoreductase, putative [Bacillus sp. SG-1]
 gi|148848315|gb|EDL62591.1| oxidoreductase, putative [Bacillus sp. SG-1]
          Length = 408

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + SYDV+++G G +G   A    + G   A++  +T+  GS S N  +       ++ E+
Sbjct: 27  DGSYDVVIVGAGMSGALCAYTLVEAGMKVAMVDKRTAGAGSSSANTGLLQFSNDIMLHEL 86

Query: 63  DALDG---------LMGRVAD--AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
               G         L     D   +      L+     A R     A +E +   ++ E 
Sbjct: 87  IEQIGEHPGVRFYKLCLEALDHLESTAHSLPLDAH--FARRKSVCFASKEEHAEKLRHEY 144

Query: 112 L 112
            
Sbjct: 145 E 145


>gi|148654032|ref|YP_001281125.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Psychrobacter sp. PRwf-1]
 gi|148573116|gb|ABQ95175.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Psychrobacter sp. PRwf-1]
          Length = 526

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
              DV VIGGG AG  +A  +A+ G    ++      IG
Sbjct: 221 ERQDVTVIGGGPAGVASAIYSARKGLKVTIVA---DRIG 256



 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL----- 58
           +S D+ VIGGG++G EAA   A +  +  +                   +   ++     
Sbjct: 362 KSKDIAVIGGGNSGIEAALDLAGIVKNVTVFEFADDLKADQVLINKAKSIDNINIITSAA 421

Query: 59  VREIDALDGLMGRVADA 75
            +EI A DG +  +   
Sbjct: 422 TKEIKATDGKVTSIVYE 438


>gi|90022161|ref|YP_527988.1| soluble pyridine nucleotide transhydrogenase [Saccharophagus
           degradans 2-40]
 gi|89951761|gb|ABD81776.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
           [Saccharophagus degradans 2-40]
          Length = 465

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 11/160 (6%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLV 59
           MI   YD++VIG G AG +AA  AAK G S ALI       GS +          K + +
Sbjct: 1   MIESQYDLVVIGSGPAGQKAAIQAAKAGKSVALIEQTRELGGSCVHRGTIPSKTLKENAL 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           R  +     M   A+ +  Q R        A    R       +   M+R++   E + +
Sbjct: 61  RVKN-----MRSNAELSHFQLREDVE---LATLIDRLNEVLAEHDSYMRRQLERNE-ITL 111

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           I G     +  +  ++ +  Q+   I  + +++ +G+  R
Sbjct: 112 IHGRAKFLSPNQLEVTKLQ-QEAECISAANIIIASGSHPR 150


>gi|21231574|ref|NP_637491.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. campestris str. ATCC 33913]
 gi|66768304|ref|YP_243066.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. campestris str. 8004]
 gi|21113261|gb|AAM41415.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. campestris str. ATCC 33913]
 gi|66573636|gb|AAY49046.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. campestris str. 8004]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|21242816|ref|NP_642398.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          axonopodis pv. citri str. 306]
 gi|21108302|gb|AAM36934.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          axonopodis pv. citri str. 306]
 gi|51536980|gb|AAU05602.1| succinate dehydrogenase subunit A [Xanthomonas citri]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|15837674|ref|NP_298362.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          9a5c]
 gi|9106019|gb|AAF83882.1|AE003943_13 succinate dehydrogenase, flavoprotein subunit [Xylella fastidiosa
          9a5c]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|78047799|ref|YP_363974.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. vesicatoria str. 85-10]
 gi|294665036|ref|ZP_06730343.1| succinate dehydrogenase [Xanthomonas fuscans subsp. aurantifolii
          str. ICPB 10535]
 gi|325928375|ref|ZP_08189570.1| succinate dehydrogenase subunit A [Xanthomonas perforans 91-118]
 gi|78036229|emb|CAJ23920.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas
          campestris pv. vesicatoria str. 85-10]
 gi|292605193|gb|EFF48537.1| succinate dehydrogenase [Xanthomonas fuscans subsp. aurantifolii
          str. ICPB 10535]
 gi|325541251|gb|EGD12798.1| succinate dehydrogenase subunit A [Xanthomonas perforans 91-118]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|58581931|ref|YP_200947.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae KACC10331]
 gi|84623843|ref|YP_451215.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae MAFF 311018]
 gi|50313517|gb|AAT74621.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae]
 gi|58426525|gb|AAW75562.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae KACC10331]
 gi|84367783|dbj|BAE68941.1| succinate dehydrogenase flavoprotein subunit [Xanthomonas oryzae
          pv. oryzae MAFF 311018]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|148260875|ref|YP_001235002.1| succinate dehydrogenase flavoprotein subunit [Acidiphilium
          cryptum JF-5]
 gi|146402556|gb|ABQ31083.1| succinate dehydrogenase subunit A [Acidiphilium cryptum JF-5]
          Length = 603

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+ +YDVIV+G G +G  A     + G  TA I+
Sbjct: 14 IIDHTYDVIVVGAGGSGLRATLGMGQAGLKTACIS 48


>gi|91977277|ref|YP_569936.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris BisB5]
 gi|91683733|gb|ABE40035.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris BisB5]
          Length = 473

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + ++DVI+IG G  G  AA  AA+LG  TA++
Sbjct: 1  MSDTAFDVIIIGSGPGGYVAAIRAAQLGFKTAIV 34


>gi|189499997|ref|YP_001959467.1| dihydrolipoamide dehydrogenase [Chlorobium phaeobacteroides BS1]
 gi|189495438|gb|ACE03986.1| dihydrolipoamide dehydrogenase [Chlorobium phaeobacteroides BS1]
          Length = 469

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIG G  G EAA  AA+ G    ++
Sbjct: 11 EYDVVVIGSGPGGFEAAVKAAQSGLQVCIV 40


>gi|116687050|ref|YP_840297.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
 gi|116652765|gb|ABK13404.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 46 DVVVIGGGFTGLSAALALAQRGVSVVVL 73


>gi|71899420|ref|ZP_00681579.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Ann-1]
 gi|71730829|gb|EAO32901.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Ann-1]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|71275601|ref|ZP_00651886.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Dixon]
 gi|71899498|ref|ZP_00681655.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Ann-1]
 gi|170729591|ref|YP_001775024.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          M12]
 gi|71163492|gb|EAO13209.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Dixon]
 gi|71730718|gb|EAO32792.1| Succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit:Succinate dehydrogenase, flavoprotein subunit
          [Xylella fastidiosa Ann-1]
 gi|167964384|gb|ACA11394.1| Succinate dehydrogenase [Xylella fastidiosa M12]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A+ G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAQKGLQTVCLT 40


>gi|330799645|ref|XP_003287853.1| hypothetical protein DICPUDRAFT_97844 [Dictyostelium purpureum]
 gi|325082123|gb|EGC35616.1| hypothetical protein DICPUDRAFT_97844 [Dictyostelium purpureum]
          Length = 431

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YD IV+GGG  G  A    AK G    ++  
Sbjct: 36 YDCIVVGGGIIGSSACYQIAKDGLKVLMLEQ 66


>gi|323694971|ref|ZP_08109121.1| hypothetical protein HMPREF9475_03985 [Clostridium symbiosum
           WAL-14673]
 gi|323501061|gb|EGB16973.1| hypothetical protein HMPREF9475_03985 [Clostridium symbiosum
           WAL-14673]
          Length = 652

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL------ITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           V+V GGG  G EAA  AA+ G +  L      +         +S    I    K  ++R 
Sbjct: 394 VLVAGGGPGGMEAAITAARRGHNVILCEKSDHLAANLDYSKQLSFKKDIVEFLKSMMLRV 453

Query: 62  ID 63
             
Sbjct: 454 QR 455


>gi|315659763|ref|ZP_07912622.1| dihydrolipoyl dehydrogenase [Staphylococcus lugdunensis M23590]
 gi|315495051|gb|EFU83387.1| dihydrolipoyl dehydrogenase [Staphylococcus lugdunensis M23590]
          Length = 450

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKG 56
          +   YDVI+IG G  G  +A  AA+LG + A+I    +      +G +     +    K 
Sbjct: 1  MTEKYDVIIIGAGPGGYVSAIRAAQLGKTVAIIEKNNAGGTCLNVGCIPSKTLLEHGKKV 60

Query: 57 HLVREIDALD 66
          H ++  D   
Sbjct: 61 HDIQSADEWG 70


>gi|314933692|ref|ZP_07841057.1| dihydrolipoyl dehydrogenase [Staphylococcus caprae C87]
 gi|313653842|gb|EFS17599.1| dihydrolipoyl dehydrogenase [Staphylococcus caprae C87]
          Length = 473

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  + YD++V+GGG AG  AA  A++LG   A++    
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSL 38


>gi|310779676|ref|YP_003968009.1| dihydrolipoamide dehydrogenase [Ilyobacter polytropus DSM 2926]
 gi|309748999|gb|ADO83661.1| dihydrolipoamide dehydrogenase [Ilyobacter polytropus DSM 2926]
          Length = 457

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           YD+IV+GGG  G  AA  AA++ A TA+I  
Sbjct: 2  DYDIIVLGGGPGGYVAAIKAAQMNAKTAIIEM 33


>gi|256015349|ref|YP_003105358.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Brucella microti CCM
           4915]
 gi|255998009|gb|ACU49696.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Brucella microti CCM
           4915]
          Length = 452

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 25/171 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG--GLGKGHLVRE 61
           D+++ GGG AG  AA      G  T L+   T KT    +    PAI            E
Sbjct: 50  DIVISGGGPAGMMAALALGVRGYHTVLLGPETDKTDRRTTALMMPAIRFLEQIGVWAAIE 109

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++A      R+ DA         + + PAV    ++ D   +   +   +L+ +   + +
Sbjct: 110 LEAAPLQSMRIVDATR------RLIRSPAVMFRASEIDEIAFGYNIPNAVLNAK---LAE 160

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              A  N  +  +            ++ ++    +    +V   G      
Sbjct: 161 AVAASRNIRRITVPAIEYRPNGDHVTVTLKGGDTLHTRLLVAADGRNSGAR 211


>gi|223043150|ref|ZP_03613197.1| dihydrolipoyl dehydrogenase [Staphylococcus capitis SK14]
 gi|222443361|gb|EEE49459.1| dihydrolipoyl dehydrogenase [Staphylococcus capitis SK14]
          Length = 473

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  + YD++V+GGG AG  AA  A++LG   A++    
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSL 38


>gi|77461587|ref|YP_351094.1| FAD dependent oxidoreductase [Pseudomonas fluorescens Pf0-1]
 gi|77385590|gb|ABA77103.1| putative oxidoreductase [Pseudomonas fluorescens Pf0-1]
          Length = 387

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHL 58
          + +  D++++G G  G   A  AA+ G    +     + +G+   N     + G   G +
Sbjct: 11 MTQHNDLLIVGAGILGLSHAYAAARRGLKVTVFERTATPLGASVRNFGQALVTGQPPGPM 70

Query: 59 VREIDALDGLMGRVADAAGIQFR 81
          +    A   + G+ A  AG+Q +
Sbjct: 71 LELAKASREIWGQWAQLAGLQLK 93


>gi|330443942|ref|YP_004376928.1| dihydrolipoamide dehydrogenase [Chlamydophila pecorum E58]
 gi|328807052|gb|AEB41225.1| dihydrolipoamide dehydrogenase [Chlamydophila pecorum E58]
          Length = 461

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSCNPAIGGLGKGHLV 59
           + + +D +VIG G  G  AA  AA+ G +TAL+   H   T  +  C P+   +   HLV
Sbjct: 1   MTKEFDCVVIGSGPGGYVAAITAAQSGLNTALVEELHAGGTCLNRGCIPSKALITGAHLV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            ++       G   +   I +  +  +K   V+G R   +  +              + V
Sbjct: 61  SQLSHAK-EFGIHIEGMSIDYSAMVRRKDTVVQGIRQGLEGLIRSNK----------ISV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            QG   G       +  ++ ++  +++   ++L TG+
Sbjct: 110 FQG--RGSLVSSTEVK-VIGENTDILKTKKIILATGS 143


>gi|325928912|ref|ZP_08190074.1| thioredoxin reductase [Xanthomonas perforans 91-118]
 gi|325540708|gb|EGD12288.1| thioredoxin reductase [Xanthomonas perforans 91-118]
          Length = 299

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++VI+IGG +AG  AA   A+      L       + S            G L R+   
Sbjct: 2  QHEVIIIGGSYAGLSAALQLARARRRVLL-------VDSGRRRNRFAETSHGLLGRD--- 51

Query: 65 LDGLMGRVADAAGIQ---FRVLNVKKGPAVRGPRTQAD 99
                R+AD A  Q   +  +    G  V+  R QAD
Sbjct: 52 -GASPARIADEARAQVLSYASVQWADGEVVQV-RGQAD 87


>gi|326789458|ref|YP_004307279.1| thioredoxin-disulfide reductase [Clostridium lentocellum DSM
          5427]
 gi|326540222|gb|ADZ82081.1| Thioredoxin-disulfide reductase [Clostridium lentocellum DSM
          5427]
          Length = 309

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  D+I+IG G AG  AA  AA+ G  T ++
Sbjct: 6  KEIDLIIIGAGPAGLTAAIYAARAGLETLVL 36


>gi|295107987|emb|CBL21940.1| Thioredoxin reductase [Ruminococcus obeum A2-162]
          Length = 303

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 12/49 (24%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          DVI+IG G AG  AA   A+            S +  +  N  IG L K
Sbjct: 3  DVIIIGAGPAGISAALYTAR------------SNLNPIVINNGIGALAK 39


>gi|293394583|ref|ZP_06638877.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Serratia odorifera DSM 4582]
 gi|291422892|gb|EFE96127.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Serratia odorifera DSM 4582]
          Length = 400

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG----GLGKGHLV 59
           +S+DV++ GGG  G   A      G   A++ H    +      PA+           L+
Sbjct: 2   QSFDVVIAGGGMVGLALACGLQGSGLRVAVLEHHQPDMSPPPQQPALRVSAINAASERLL 61

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGP-AVRGPRTQ-------ADRELYRLAMQREI 111
           ++I   D ++   A A            G  A  G            + ++ + A+ R+ 
Sbjct: 62  QQIGVWDEILQLRASAYNAMEVWDRDSFGKIAFSGDECGFSHLGHIIENDVIQQALWRKA 121

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
            +  +L +I              + I + D  M+    VV   G  
Sbjct: 122 QASSDLTLITPAALKQVAWGENDAFITLDDGRMLSARLVVGADGAH 167


>gi|239908133|ref|YP_002954874.1| putative mercuric reductase [Desulfovibrio magneticus RS-1]
 gi|239797999|dbj|BAH76988.1| putative mercuric reductase [Desulfovibrio magneticus RS-1]
          Length = 480

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+ VIGGG AG   AA A +LG  T LI
Sbjct: 6  HYDLAVIGGGAAGLTVAAGAGRLGVKTLLI 35


>gi|228917154|ref|ZP_04080712.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228842572|gb|EEM87662.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|229019735|ref|ZP_04176540.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1273]
 gi|229025961|ref|ZP_04182350.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1272]
 gi|228735331|gb|EEL85937.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1272]
 gi|228741552|gb|EEL91747.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1273]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|229013716|ref|ZP_04170845.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          DSM 2048]
 gi|229062199|ref|ZP_04199522.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH603]
 gi|229135349|ref|ZP_04264139.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST196]
 gi|228648102|gb|EEL04147.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST196]
 gi|228717093|gb|EEL68771.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH603]
 gi|228747638|gb|EEL97512.1| Succinate dehydrogenase flavoprotein subunit [Bacillus mycoides
          DSM 2048]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|228935826|ref|ZP_04098638.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229158124|ref|ZP_04286193.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 4342]
 gi|228625353|gb|EEK82111.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 4342]
 gi|228823883|gb|EEM69703.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|229169242|ref|ZP_04296955.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH621]
 gi|228614225|gb|EEK71337.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH621]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|229032161|ref|ZP_04188137.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1271]
 gi|229175224|ref|ZP_04302740.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          MM3]
 gi|228608360|gb|EEK65666.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          MM3]
 gi|228729167|gb|EEL80167.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH1271]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|297197519|ref|ZP_06914916.1| dihydrolipoyl dehydrogenase [Streptomyces sviceus ATCC 29083]
 gi|297146765|gb|EDY59646.2| dihydrolipoyl dehydrogenase [Streptomyces sviceus ATCC 29083]
          Length = 470

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHL 58
            +DV+V+G G  G  AA  AA+LG   A++  K        +G +     +      HL
Sbjct: 6  ERFDVVVLGAGPGGYVAAIRAAQLGKRVAVVEQKYWGGVCLNVGCIPTKALLRNAELAHL 65

Query: 59 -VREIDALD 66
            RE     
Sbjct: 66 FTREAKTFG 74


>gi|238490148|ref|XP_002376311.1| amine oxidase, putative [Aspergillus flavus NRRL3357]
 gi|220696724|gb|EED53065.1| amine oxidase, putative [Aspergillus flavus NRRL3357]
          Length = 433

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DV VIG G AG  AA   +K G    L+
Sbjct: 1  MGEIFDVAVIGAGMAGIVAARDLSKNGHKVVLV 33


>gi|167635555|ref|ZP_02393867.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0442]
 gi|254741658|ref|ZP_05199345.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Kruger B]
 gi|167528975|gb|EDR91730.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0442]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|49478676|ref|YP_038568.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|196039316|ref|ZP_03106622.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          NVH0597-99]
 gi|225866491|ref|YP_002751869.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          03BB102]
 gi|229093612|ref|ZP_04224713.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-42]
 gi|49330232|gb|AAT60878.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|196029943|gb|EDX68544.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          NVH0597-99]
 gi|225790726|gb|ACO30943.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          03BB102]
 gi|228689821|gb|EEL43627.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-42]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|30264583|ref|NP_846960.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Ames]
 gi|47530053|ref|YP_021402.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. 'Ames Ancestor']
 gi|49187408|ref|YP_030660.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Sterne]
 gi|165871481|ref|ZP_02216128.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0488]
 gi|167641675|ref|ZP_02399920.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0193]
 gi|170688254|ref|ZP_02879464.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0465]
 gi|170708340|ref|ZP_02898784.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0389]
 gi|177653105|ref|ZP_02935392.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0174]
 gi|190567015|ref|ZP_03019931.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          Tsiankovskii-I]
 gi|196034422|ref|ZP_03101831.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus W]
 gi|218905741|ref|YP_002453575.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          AH820]
 gi|227817298|ref|YP_002817307.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. CDC 684]
 gi|228929563|ref|ZP_04092582.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228948239|ref|ZP_04110523.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124080|ref|ZP_04253272.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          95/8201]
 gi|229604670|ref|YP_002868796.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0248]
 gi|254686994|ref|ZP_05150852.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. CNEVA-9066]
 gi|254724557|ref|ZP_05186340.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. A1055]
 gi|254736620|ref|ZP_05194326.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Western North America USA6153]
 gi|254754744|ref|ZP_05206779.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Vollum]
 gi|254757576|ref|ZP_05209603.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          str. Australia 94]
 gi|301056026|ref|YP_003794237.1| succinate dehydrogenase flavoprotein subunit [Bacillus anthracis
          CI]
 gi|30259241|gb|AAP28446.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. Ames]
 gi|47505201|gb|AAT33877.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. 'Ames Ancestor']
 gi|49181335|gb|AAT56711.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. Sterne]
 gi|164712778|gb|EDR18308.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0488]
 gi|167510382|gb|EDR85783.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0193]
 gi|170126715|gb|EDS95598.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0389]
 gi|170667760|gb|EDT18513.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0465]
 gi|172081629|gb|EDT66700.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0174]
 gi|190562006|gb|EDV15975.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          Tsiankovskii-I]
 gi|195992964|gb|EDX56923.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus W]
 gi|218536031|gb|ACK88429.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          AH820]
 gi|227005384|gb|ACP15127.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. CDC 684]
 gi|228659382|gb|EEL15030.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          95/8201]
 gi|228811597|gb|EEM57934.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228830142|gb|EEM75760.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229269078|gb|ACQ50715.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis
          str. A0248]
 gi|300378195|gb|ADK07099.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          biovar anthracis str. CI]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|30022595|ref|NP_834226.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 14579]
 gi|29898153|gb|AAP11427.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 14579]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|46446722|ref|YP_008087.1| dihydrolipoamide dehydrogenase precursor (E3 component of
          pyruvate dehydrogenase multi-enzyme complex)
          [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400363|emb|CAF23812.1| probable dihydrolipoamide dehydrogenase precursor (E3 component
          of pyruvate dehydrogenase multi-enzyme complex)
          [Candidatus Protochlamydia amoebophila UWE25]
          Length = 465

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          +   YD+ V+G G  G  AA  AA++G  T  I  K  T+G    ++ C P+
Sbjct: 1  MVEHYDLAVVGAGPGGYVAAIRAAQMGLKTICID-KRETLGGTCLNVGCIPS 51


>gi|163942248|ref|YP_001647132.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          weihenstephanensis KBAB4]
 gi|163864445|gb|ABY45504.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Bacillus weihenstephanensis KBAB4]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|65321882|ref|ZP_00394841.1| COG1053: Succinate dehydrogenase/fumarate reductase, flavoprotein
          subunit [Bacillus anthracis str. A2012]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|302184816|ref|ZP_07261489.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          syringae pv. syringae 642]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  AAK G   A +  +    G+ +    I      H V+
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVARVDSRRQVGGNCTHLGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|229580465|ref|YP_002838865.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus Y.G.57.14]
 gi|229580885|ref|YP_002839284.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus Y.N.15.51]
 gi|228011181|gb|ACP46943.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus Y.G.57.14]
 gi|228011601|gb|ACP47362.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus Y.N.15.51]
 gi|323478594|gb|ADX83832.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus HVE10/4]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  +++D I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTFDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|94498244|ref|ZP_01304804.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
 gi|94422246|gb|EAT07287.1| Dihydrolipoamide dehydrogenase [Sphingomonas sp. SKA58]
          Length = 371

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           +  +YD+IV+G G  G  AA  AA+LG   A++      +G +     C P    L    
Sbjct: 1   MAENYDLIVLGSGPGGYVAAIRAAQLGLKVAIVE--RENLGGICLNWGCIPTKALLRSAE 58

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +   +             +     V+   +G A +                   L+Q   
Sbjct: 59  IFHYMQHAGDYGLAAEKISADIAAVVKRSRGVAKQ-------------------LNQGVT 99

Query: 118 DVIQGEVAGFNTEKNIISSI----VMQDN--SMIRCSTVVLTTGTFLRGV 161
            +++      +     ++      V +D     +    ++L TG   R +
Sbjct: 100 HLMKKNKIAVHMGDGKLTGKGKLSVTKDGKTEELTAKNIILATGARARDL 149


>gi|120401809|ref|YP_951638.1| dihydrolipoamide dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119954627|gb|ABM11632.1| dihydrolipoamide dehydrogenase [Mycobacterium vanbaalenii PYR-1]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G  +   G  F
Sbjct: 63 TKEAKTFGISGEASFDYGAAF 83


>gi|52140988|ref|YP_085843.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          E33L]
 gi|51974457|gb|AAU16007.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          E33L]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|319440989|ref|ZP_07990145.1| putative FAD-binding dehydrogenase [Corynebacterium variabile DSM
          44702]
          Length = 571

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +    DVIV+G G AG  AA  A K G    ++
Sbjct: 1  MGERTDVIVVGCGLAGMVAAHEAQKAGLKVLVL 33


>gi|313681183|ref|YP_004058921.1| hi0933 family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154043|gb|ADR32721.1| HI0933 family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 406

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V +IGGG +G  A   AA+ GA+  L          +       G G+ +++    + D 
Sbjct: 4  VAIIGGGASGLMAGLFAARAGANVTLYEQN----NGVGKKILASGNGRCNIINTTSSADD 59

Query: 68 LMG 70
            G
Sbjct: 60 FAG 62


>gi|307243904|ref|ZP_07526029.1| flavoprotein family protein [Peptostreptococcus stomatis DSM
          17678]
 gi|306492726|gb|EFM64754.1| flavoprotein family protein [Peptostreptococcus stomatis DSM
          17678]
          Length = 418

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          + + YD+IV+G G  G  AA  A K           TS I  +    A+G
Sbjct: 1  MKKEYDLIVVGAGPGGIMAALTARKYN--------NTSKIALVESGKALG 42


>gi|291278918|ref|YP_003495753.1| thioredoxin reductase [Deferribacter desulfuricans SSM1]
 gi|290753620|dbj|BAI79997.1| thioredoxin reductase [Deferribacter desulfuricans SSM1]
          Length = 322

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YDV++IGGG AG  A   AA+   +T ++   
Sbjct: 10 LKEEYDVVIIGGGPAGLTAGIYAARDDLNTLILEKN 45


>gi|269996423|gb|ACZ57545.1| predicted monooxygenase [Alternaria brassicicola]
          Length = 528

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 14/177 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++ VI+IG G  G   A   AK      L+      +                ++ ++  
Sbjct: 7   TFKVIIIGAGVTGLTLAHCLAKACIDYVLL--DKGIVAPSFGTTITLQPHGCRILHQLGC 64

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT----------QADRELYRLAMQREILSQ 114
           LD ++      +G Q R  + K   +    R             DR+++   M  ++  Q
Sbjct: 65  LDAVLASCDVMSGAQCRDPSGKTFASNDFFRVVKKFTGYDTRTLDRKVFLRTMYEQLPDQ 124

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
             +      V     +      +V+QD      + V+ T G   +    +      A
Sbjct: 125 SRVHER-ARVEEIIEDNEKTR-VVLQDGQEFVGNLVIGTDGVHSKVREIMWDNANTA 179


>gi|262382086|ref|ZP_06075224.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_33B]
 gi|262297263|gb|EEY85193.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 2_1_33B]
          Length = 451

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD+ +IGGG AG  AA  A++ G  T L    
Sbjct: 1  MYMEYDIAIIGGGPAGYTAAERASENGLKTILFEKN 36


>gi|260777674|ref|ZP_05886567.1| hypothetical protein VIC_003071 [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260605687|gb|EEX31972.1| hypothetical protein VIC_003071 [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSCNPAIGGLGKGHLVREID 63
          V VIGGG AG  AA   A++G +  L+   KT   G   C+   G    G+L REI 
Sbjct: 13 VAVIGGGIAGSTAALHLAEIGINVVLLEKGKTLISGPPICHLHAG----GNLYREIS 65


>gi|256026559|ref|ZP_05440393.1| thioredoxin reductase [Fusobacterium sp. D11]
          Length = 307

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDVI++G G AG  A   A +   ST ++      IGSM  +  I      H+   
Sbjct: 1  MEKIYDVIIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSMIMSHQIDNYPGFHIGAS 58

Query: 62 IDALDGLMGRVADAAGIQFR 81
             +   M + A   G + R
Sbjct: 59 GKEIYDTMKKQALDFGCEIR 78


>gi|228987766|ref|ZP_04147877.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772040|gb|EEM20495.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|225027724|ref|ZP_03716916.1| hypothetical protein EUBHAL_01983 [Eubacterium hallii DSM 3353]
 gi|224954928|gb|EEG36137.1| hypothetical protein EUBHAL_01983 [Eubacterium hallii DSM 3353]
          Length = 996

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           V VIGGG AG  AA   ++ G    +   K+  +G +  N
Sbjct: 542 VAVIGGGPAGLSAAMFLSRAGVPVTVFE-KSENLGGVVRN 580


>gi|171317928|ref|ZP_02907103.1| FAD dependent oxidoreductase [Burkholderia ambifaria MEX-5]
 gi|171096880|gb|EDT41753.1| FAD dependent oxidoreductase [Burkholderia ambifaria MEX-5]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 46 DVVVIGGGFTGLSAALALAQRGVSVVVL 73


>gi|206969881|ref|ZP_03230835.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          AH1134]
 gi|218231104|ref|YP_002369312.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          B4264]
 gi|228923259|ref|ZP_04086549.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954785|ref|ZP_04116806.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar kurstaki str. T03a001]
 gi|228960781|ref|ZP_04122419.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pakistani str. T13001]
 gi|229048221|ref|ZP_04193790.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH676]
 gi|229072020|ref|ZP_04205230.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          F65185]
 gi|229081768|ref|ZP_04214261.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock4-2]
 gi|229111978|ref|ZP_04241522.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock1-15]
 gi|229129800|ref|ZP_04258767.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-Cer4]
 gi|229147074|ref|ZP_04275434.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST24]
 gi|229152709|ref|ZP_04280896.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          m1550]
 gi|229180781|ref|ZP_04308119.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          172560W]
 gi|229192714|ref|ZP_04319673.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 10876]
 gi|296504992|ref|YP_003666692.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis BMB171]
 gi|206735569|gb|EDZ52737.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          AH1134]
 gi|218159061|gb|ACK59053.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          B4264]
 gi|228590804|gb|EEK48664.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 10876]
 gi|228602759|gb|EEK60242.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          172560W]
 gi|228630772|gb|EEK87414.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          m1550]
 gi|228636462|gb|EEK92932.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST24]
 gi|228653716|gb|EEL09587.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-Cer4]
 gi|228671542|gb|EEL26842.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock1-15]
 gi|228701613|gb|EEL54106.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock4-2]
 gi|228711179|gb|EEL63144.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          F65185]
 gi|228723208|gb|EEL74584.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH676]
 gi|228798916|gb|EEM45892.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar pakistani str. T13001]
 gi|228804905|gb|EEM51503.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar kurstaki str. T03a001]
 gi|228836465|gb|EEM81816.1| Succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|296326044|gb|ADH08972.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis BMB171]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|146277884|ref|YP_001168043.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556125|gb|ABP70738.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC 17025]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 32/192 (16%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  RS+D+IVIG G  G   A  AA+LG + A++       I    G +     +     
Sbjct: 1   MAARSFDMIVIGAGPGGYVCAIRAAQLGLNVAIVERENLGGICLNWGCIPTKALLRSAEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            HL+             AD  G     V+   +G A +     A            ++ +
Sbjct: 61  FHLMHRAKEFG----LKADGIGYDLDAVVKRSRGVARQLSSGVA-----------HLMKK 105

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR---------GVIHIG 165
             + V+ GE          +S    +    +    +V+ TG   R          ++   
Sbjct: 106 NKVTVVMGEAK--LAGPGRVSVTSDKGAEELEARAIVVATGARARELPGLEADGDLVWTY 163

Query: 166 KLKIPAGRMGDS 177
           +  +  GRM   
Sbjct: 164 RHALQPGRMPKK 175


>gi|189424009|ref|YP_001951186.1| flavocytochrome C [Geobacter lovleyi SZ]
 gi|189420268|gb|ACD94666.1| flavocytochrome c [Geobacter lovleyi SZ]
          Length = 517

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +YDVIV+G G AG  AA  A   GA   +I
Sbjct: 53 DETYDVIVVGTGFAGLSAAIEARHAGAEVLVI 84


>gi|159899796|ref|YP_001546043.1| anti-sigma-factor antagonist [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892835|gb|ABX05915.1| anti-sigma-factor antagonist [Herpetosiphon aurantiacus ATCC 23779]
          Length = 318

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEF-LSYP 511
           +  I E         I + +  +  +K+     ++ +   +   Q+ +   A    L  P
Sbjct: 143 IRTISETNLLTLQDTISKSDGEQRRIKAQSTLMRSQADALLKQNQEQQRLLALVETLETP 202

Query: 512 DFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYS 571
             +I     + P         +E++            Q      I  +  RL+    D +
Sbjct: 203 AVTIAANVLLAPLVGALDPKRVEQI------------QKRLLANIHRQRTRLL--ILDLA 248

Query: 572 SLPALSNELKEK 583
            +  LSNE  EK
Sbjct: 249 GVRELSNEAAEK 260


>gi|104782864|ref|YP_609362.1| oxidase [Pseudomonas entomophila L48]
 gi|95111851|emb|CAK16575.1| putative oxidase [Pseudomonas entomophila L48]
          Length = 390

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          +++S+D +VIGGG AG   A   A+ G    L
Sbjct: 1  MSQSFDFVVIGGGIAGVSVAYQLAEHGRVCLL 32


>gi|194468160|ref|ZP_03074146.1| thioredoxin reductase [Lactobacillus reuteri 100-23]
 gi|194453013|gb|EDX41911.1| thioredoxin reductase [Lactobacillus reuteri 100-23]
          Length = 310

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDV++IG G  G  AA  A++   S  ++
Sbjct: 4  SKQYDVVIIGAGPGGMTAAMYASRANLSVLML 35


>gi|78186179|ref|YP_374222.1| protoporphyrinogen oxidase, putative [Chlorobium luteolum DSM 273]
 gi|78166081|gb|ABB23179.1| protoporphyrinogen oxidase, putative [Chlorobium luteolum DSM 273]
          Length = 412

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 36/207 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M+   +DV+++GGG +G   A   A+ G    L+       GS + +P    +G+     
Sbjct: 16  MM--EHDVVIVGGGISGLSMAFYCAEAGMRPLLLEQNAEAGGSFA-SPRY-EIGRKTFWL 71

Query: 61  EIDA------LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           E+ A         L+G + +A G+   ++   K P       +    +  L +   +LS 
Sbjct: 72  EMGAHTCYSSYQNLLG-IVEACGMMGDIIPRAKVPFSLFIDGKVKSLVSSLHIGELLLSA 130

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
            N+  ++ E     +    I                          VI      +P+   
Sbjct: 131 PNIFKLKKEDQSVRSYYEKIVGKR------------------NYDEVIRHFFNAVPSQPT 172

Query: 175 GDSPSNSLFNS-------FMKFDFDTG 194
            D P++ +F S          + F  G
Sbjct: 173 DDFPADMMFKSRPKRKDVLKNYTFRDG 199


>gi|24371654|ref|NP_715696.1| hypothetical protein SO_0054 [Shewanella oneidensis MR-1]
 gi|24345420|gb|AAN53141.1|AE015457_3 conserved hypothetical protein TIGR00275 [Shewanella oneidensis
          MR-1]
          Length = 396

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M  + +DVI+IG G AG   AA A   G    +                I G G+ +
Sbjct: 1  MSVKHHDVIIIGAGAAGLMCAATAGYRGRDVLV----LDNAKQAGRKILISGGGRCN 53


>gi|148543612|ref|YP_001270982.1| thioredoxin reductase [Lactobacillus reuteri DSM 20016]
 gi|184153020|ref|YP_001841361.1| thioredoxin reductase [Lactobacillus reuteri JCM 1112]
 gi|227363425|ref|ZP_03847549.1| thioredoxin-disulfide reductase [Lactobacillus reuteri MM2-3]
 gi|325681966|ref|ZP_08161484.1| thioredoxin reductase [Lactobacillus reuteri MM4-1A]
 gi|148530646|gb|ABQ82645.1| thioredoxin reductase [Lactobacillus reuteri DSM 20016]
 gi|183224364|dbj|BAG24881.1| thioredoxin reductase [Lactobacillus reuteri JCM 1112]
 gi|227071525|gb|EEI09824.1| thioredoxin-disulfide reductase [Lactobacillus reuteri MM2-3]
 gi|324978610|gb|EGC15559.1| thioredoxin reductase [Lactobacillus reuteri MM4-1A]
          Length = 310

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ YDV++IG G  G  AA  A++   S  ++
Sbjct: 4  SKQYDVVIIGAGPGGMTAAMYASRANLSVLML 35


>gi|107029123|ref|YP_626218.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|116686991|ref|YP_840238.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
 gi|105898287|gb|ABF81245.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|116652706|gb|ABK13345.1| FAD dependent oxidoreductase [Burkholderia cenocepacia HI2424]
          Length = 389

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I+  YD  V+GGG  GC  A   A+ G    L+
Sbjct: 8  ISGHYDAAVVGGGVMGCTTALFLARAGMRVVLL 40


>gi|107029179|ref|YP_626274.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
 gi|105898343|gb|ABF81301.1| FAD dependent oxidoreductase [Burkholderia cenocepacia AU 1054]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 46 DVVVIGGGFTGLSAALALAQRGVSVVVL 73


>gi|113476862|ref|YP_722923.1| pyridine nucleotide-disulfide oxidoreductase dimerisation subunit
          [Trichodesmium erythraeum IMS101]
 gi|110167910|gb|ABG52450.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Trichodesmium erythraeum IMS101]
          Length = 473

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          +   YD+++IGGG AG   A+ AA+L A  AL+      +G       C P+
Sbjct: 1  MAVKYDIVIIGGGSAGLVVASAAAQLKAKVALVE--RDKLGGDCLWFGCVPS 50


>gi|258404675|ref|YP_003197417.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfohalobium retbaense DSM 5692]
 gi|257796902|gb|ACV67839.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfohalobium retbaense DSM 5692]
          Length = 302

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + Y+V V+G G AG  AA   A+ G ST ++  +    G    +   G   +    RE+ 
Sbjct: 2  KKYEVAVVGQGPAGLSAAIYTARAGMSTLVLGCEPKVSGDYDIDNYFGFP-ETITGRELL 60

Query: 64 ALDGLMGRVADAAGIQFRVLNV 85
                 R A    +Q R   V
Sbjct: 61 ERG---KRQAKRFDVQMRCDRV 79


>gi|209881301|ref|XP_002142089.1| amine oxidase, flavin-containing family protein [Cryptosporidium
           muris RN66]
 gi|209557695|gb|EEA07740.1| amine oxidase, flavin-containing family protein [Cryptosporidium
           muris RN66]
          Length = 1054

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           I + YDVIVIG G AG  AA +  +      ++
Sbjct: 542 ITKCYDVIVIGAGVAGMRAAELLLQRNLQVIIL 574


>gi|197302233|ref|ZP_03167292.1| hypothetical protein RUMLAC_00960 [Ruminococcus lactaris ATCC
           29176]
 gi|197298664|gb|EDY33205.1| hypothetical protein RUMLAC_00960 [Ruminococcus lactaris ATCC
           29176]
          Length = 421

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+IV+GGG  G  AA  AA+ G  T ++
Sbjct: 119 YDMIVVGGGPGGYTAALYAARAGMDTVVL 147


>gi|218295869|ref|ZP_03496649.1| thioredoxin reductase [Thermus aquaticus Y51MC23]
 gi|218243607|gb|EED10135.1| thioredoxin reductase [Thermus aquaticus Y51MC23]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVR 60
            +YDV++IGGG AG  A   A + G  T ++        I          G  +G    
Sbjct: 15 EETYDVVIIGGGPAGLTAGIYAGRGGLKTVIVEKGLPGGQIAQTEEVENYPGFPEGISGP 74

Query: 61 EIDALDGLMGRVADAAGIQFRV 82
          E+    G M + A+  G +  +
Sbjct: 75 ELA---GRMAKQAEKFGARIVM 93


>gi|171319923|ref|ZP_02909001.1| FAD dependent oxidoreductase [Burkholderia ambifaria MEX-5]
 gi|171094840|gb|EDT39875.1| FAD dependent oxidoreductase [Burkholderia ambifaria MEX-5]
          Length = 433

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S  ++        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALNLAERGHSVTVLEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLMGR 71
            M  
Sbjct: 91 NFMPE 95


>gi|134100683|ref|YP_001106344.1| L-amino-acid oxidase [Saccharopolyspora erythraea NRRL 2338]
 gi|133913306|emb|CAM03419.1| L-amino-acid oxidase [Saccharopolyspora erythraea NRRL 2338]
          Length = 432

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++ SYDVIVIG G AG  AA   +  G S  ++  +   IG
Sbjct: 1  MDDSYDVIVIGAGFAGLTAARELSLRGRSVVVLEAR-DRIG 40


>gi|170734714|ref|YP_001773828.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
 gi|169820752|gb|ACA95333.1| FAD dependent oxidoreductase [Burkholderia cenocepacia MC0-3]
          Length = 389

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I+  YD  V+GGG  GC  A   A+ G    L+
Sbjct: 8  ISGHYDAAVVGGGVMGCTTALFLARAGMRVVLL 40


>gi|118479669|ref|YP_896820.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis str. Al Hakam]
 gi|196044741|ref|ZP_03111975.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          03BB108]
 gi|229186749|ref|ZP_04313907.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BGSC 6E1]
 gi|118418894|gb|ABK87313.1| succinate dehydrogenase subunit A [Bacillus thuringiensis str. Al
          Hakam]
 gi|196024229|gb|EDX62902.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          03BB108]
 gi|228596762|gb|EEK54424.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BGSC 6E1]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|222055046|ref|YP_002537408.1| dihydrolipoamide dehydrogenase [Geobacter sp. FRC-32]
 gi|221564335|gb|ACM20307.1| dihydrolipoamide dehydrogenase [Geobacter sp. FRC-32]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YD+I+IG G  G  AA  AA+LG   A++
Sbjct: 1  MSDEMYDLIIIGAGPGGYVAAIRAAQLGMKVAVV 34


>gi|50954112|ref|YP_061400.1| phytoene dehydrogenase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950594|gb|AAT88295.1| phytoene dehydrogenase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 529

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          S+DV+++GGGH G  AAA  A  G S  ++  +   +G  + +       +  L R    
Sbjct: 12 SHDVVIVGGGHNGLTAAAYLASAGKSVIVLE-RLDDVGGAAVSTQAFPGVEARLSRYSSL 70

Query: 65 LDGLMGRVADAAGIQFRVLNVK 86
          +  L  R+ D  G+  R+   +
Sbjct: 71 VSLLPQRIVDDLGLDIRLARRR 92


>gi|42783690|ref|NP_980937.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          ATCC 10987]
 gi|206977751|ref|ZP_03238642.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          H3081.97]
 gi|217962000|ref|YP_002340570.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          AH187]
 gi|222097983|ref|YP_002532040.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus Q1]
 gi|229141247|ref|ZP_04269786.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST26]
 gi|229198665|ref|ZP_04325366.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          m1293]
 gi|42739619|gb|AAS43545.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          ATCC 10987]
 gi|206744052|gb|EDZ55468.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          H3081.97]
 gi|217062999|gb|ACJ77249.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          AH187]
 gi|221242041|gb|ACM14751.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus
          Q1]
 gi|228584824|gb|EEK42941.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          m1293]
 gi|228642288|gb|EEK98580.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          BDRD-ST26]
 gi|324328409|gb|ADY23669.1| succinate dehydrogenase flavoprotein subunit [Bacillus
          thuringiensis serovar finitimus YBT-020]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|330469681|ref|YP_004407424.1| kynurenine 3-monooxygenase [Verrucosispora maris AB-18-032]
 gi|328812652|gb|AEB46824.1| kynurenine 3-monooxygenase [Verrucosispora maris AB-18-032]
          Length = 444

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M  R  ++ V+G G AGC  A   A+ G S  L   +  
Sbjct: 1  MNTRQDEIAVVGAGLAGCLLACYLARRGHSVTLYERRPD 39


>gi|325125781|gb|ADY85111.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
 gi|325125796|gb|ADY85126.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 161

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          ++D++V+G   +G  AA  A++ GA  AL+  K    G        G  G   +      
Sbjct: 2  NFDIVVVGASASGISAALTASECGAKVALLE-KGDKFGGAG---MFGAQGLFAVESRAQK 57

Query: 65 LDGLMGRVADA 75
            G+   + DA
Sbjct: 58 EAGVKYSLKDA 68


>gi|294675811|ref|YP_003576426.1| hypothetical protein RCAP_rcc00254 [Rhodobacter capsulatus SB
          1003]
 gi|294474631|gb|ADE84019.1| HI0933-like protein [Rhodobacter capsulatus SB 1003]
          Length = 393

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +VIGGG AG  AA   A+ G    L   K     +++    + G    +L R+
Sbjct: 4  LVIGGGPAGMMAAEELARAGVRVLLTEAKP----TLARKFLMAGKSGLNLTRD 52


>gi|289764566|ref|ZP_06523944.1| thioredoxin reductase [Fusobacterium sp. D11]
 gi|289716121|gb|EFD80133.1| thioredoxin reductase [Fusobacterium sp. D11]
          Length = 310

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDVI++G G AG  A   A +   ST ++      IGSM  +  I      H+   
Sbjct: 4  MEKIYDVIIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSMIMSHQIDNYPGFHIGAS 61

Query: 62 IDALDGLMGRVADAAGIQFR 81
             +   M + A   G + R
Sbjct: 62 GKEIYDTMKKQALDFGCEIR 81


>gi|326317368|ref|YP_004235040.1| hypothetical protein Acav_2561 [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323374204|gb|ADX46473.1| uncharacterized flavoprotein, PP_4765 family [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 459

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG +G  AA V A  G S  +       + S+     + G G  +L    +   
Sbjct: 17 DVAVVGGGPSGLMAAEVMAARGLSVHVF----DAMPSVGRKFLLAGKGGLNLTHS-EPFG 71

Query: 67 GLMGRVADAAGIQFRVLNVKKGP 89
            + R  D AG          GP
Sbjct: 72 PFLERYGDRAGT-LEAGLRAFGP 93


>gi|256839630|ref|ZP_05545139.1| dihydrolipoyl dehydrogenase [Parabacteroides sp. D13]
 gi|298375327|ref|ZP_06985284.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 3_1_19]
 gi|256738560|gb|EEU51885.1| dihydrolipoyl dehydrogenase [Parabacteroides sp. D13]
 gi|298267827|gb|EFI09483.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 3_1_19]
          Length = 451

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD+ +IGGG AG  AA  A++ G  T L    
Sbjct: 1  MYMEYDIAIIGGGPAGYTAAERASENGLKTILFEKN 36


>gi|257784710|ref|YP_003179927.1| Thioredoxin-disulfide reductase [Atopobium parvulum DSM 20469]
 gi|257473217|gb|ACV51336.1| Thioredoxin-disulfide reductase [Atopobium parvulum DSM 20469]
          Length = 547

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 102/363 (28%), Gaps = 89/363 (24%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD ++IGGG AG  AA   A+                               LV E D  
Sbjct: 8   YDAVIIGGGPAGLTAALYLARARYRV--------------------------LVVEKDHF 41

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +  + +       V +          R QA           E    E L     EV 
Sbjct: 42  GGQI-TITNEVVNYPGVFSTSGSELSETMRKQA-----------EAFGAEFLL---AEVT 86

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
             +   + +  +       + C +V+L TG   R +  +G+              +  + 
Sbjct: 87  DLDMSGD-VKVVHTTKGERL-CLSVLLATGAHPRHIGFVGEEDYQG---HGVAYCATCDG 141

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245
             +F         G       +++   K  K            +T  +      C     
Sbjct: 142 --EFFTGKEVFVIGGGFAAAEESVFLTKYAK-----------HVTVLVREEAFTCA---- 184

Query: 246 NLETHRIIMENIKHSAIYSGDIKSY-GPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDV 304
              +      N   + +Y+  ++S  G     SI  K ++ GE+        PE  ++  
Sbjct: 185 -PASSEAARTNPNITVLYNTQVESVAGDSALRSITYKNLKTGEK----TTFAPEDGDSIG 239

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLF 364
           V+    +   PE    +        E       GY I  ++                GLF
Sbjct: 240 VFV--FAGYAPETDLVK--------ELAQTDDYGYLITNEHQETTC----------EGLF 279

Query: 365 LAG 367
            AG
Sbjct: 280 GAG 282


>gi|167523218|ref|XP_001745946.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775747|gb|EDQ89370.1| predicted protein [Monosiga brevicollis MX1]
          Length = 330

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+++GG  AG  AA   A+   S  L 
Sbjct: 8  YDVVIVGGSFAGSAAALQLARASRSVLLC 36


>gi|254255441|ref|ZP_04948757.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
 gi|124901178|gb|EAY71928.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
          Length = 469

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 71 DVVVIGGGFTGLSAALALAQRGVSVVVL 98


>gi|121535794|ref|ZP_01667595.1| glutamate synthase (NADPH), homotetrameric [Thermosinus
           carboxydivorans Nor1]
 gi|121305626|gb|EAX46567.1| glutamate synthase (NADPH), homotetrameric [Thermosinus
           carboxydivorans Nor1]
          Length = 469

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V VIG G AG  AA   A++G    + 
Sbjct: 141 VAVIGAGPAGLSAAGDLARMGYKVTVF 167


>gi|326402759|ref|YP_004282840.1| gamma-glutamylputrescine oxidoreductase [Acidiphilium multivorum
          AIU301]
 gi|325049620|dbj|BAJ79958.1| gamma-glutamylputrescine oxidoreductase [Acidiphilium multivorum
          AIU301]
          Length = 419

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV +IG G  GC AA   A+ G    ++  +    G+   N
Sbjct: 27 DVAIIGAGMTGCSAALHLAERGYRVVVLEGERIGFGASGRN 67


>gi|325105176|ref|YP_004274830.1| dihydrolipoamide dehydrogenase [Pedobacter saltans DSM 12145]
 gi|324974024|gb|ADY53008.1| dihydrolipoamide dehydrogenase [Pedobacter saltans DSM 12145]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA  +A+LG  TA+I
Sbjct: 2  QYDVIVIGSGPGGYVAAIRSAQLGLKTAMI 31


>gi|298675350|ref|YP_003727100.1| succinate dehydrogenase or fumarate reductase flavoprotein
          subunit [Methanohalobium evestigatum Z-7303]
 gi|298288338|gb|ADI74304.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Methanohalobium evestigatum Z-7303]
          Length = 558

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +DVIVIGGG +G  AA  A K GA  A+I+
Sbjct: 4  HDVIVIGGGLSGLRAALEAHKKGADVAIIS 33


>gi|312140753|ref|YP_004008089.1| oxidoreductase [Rhodococcus equi 103S]
 gi|325675607|ref|ZP_08155291.1| alpha keto acid dehydrogenase complex [Rhodococcus equi ATCC
          33707]
 gi|311890092|emb|CBH49410.1| putative oxidoreductase [Rhodococcus equi 103S]
 gi|325553578|gb|EGD23256.1| alpha keto acid dehydrogenase complex [Rhodococcus equi ATCC
          33707]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +++IGGG AG EAA VAA+ GA+ +L    +  IG
Sbjct: 4  IVIIGGGPAGYEAALVAAQHGAAVSL--IDSDGIG 36


>gi|225874685|ref|YP_002756144.1| L-aspartate oxidase [Acidobacterium capsulatum ATCC 51196]
 gi|225791336|gb|ACO31426.1| L-aspartate oxidase [Acidobacterium capsulatum ATCC 51196]
          Length = 513

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG-------- 56
            +D +V+G G AG  AA   A  G    ++T     +G  + + A GG+           
Sbjct: 6   EFDFVVVGAGIAGLRAAIELADAG-RVLVLT--KEALGESNTSYAQGGIAVAMSGAEDVA 62

Query: 57  -HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
            HL   + A DGL+ R A    ++   L V++  A    R   DRE
Sbjct: 63  LHLEDTVAAGDGLVDREAARVLVEEGPLRVEELLA-WDTR--FDRE 105


>gi|163750729|ref|ZP_02157965.1| flavocytochrome c flavin subunit, putative [Shewanella benthica
           KT99]
 gi|161329573|gb|EDQ00565.1| flavocytochrome c flavin subunit, putative [Shewanella benthica
           KT99]
          Length = 532

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
            +   D+IV+G G AG  AA  A + GAS  ++      +     N  I G    +    
Sbjct: 56  FDEVVDIIVVGSGFAGMSAALQAREAGASVMVV----DKMPVFGGNSTINGGAMAVAGSP 111

Query: 58  LVREIDALDGLMGRVADA 75
           L +E    D +   VAD 
Sbjct: 112 LQQENGIKDSVDTMVADM 129


>gi|116331658|ref|YP_801376.1| dihydrolipoamide dehydrogenase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116125347|gb|ABJ76618.1| Dihydrolipoamide dehydrogenase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV+VIG G  G   A  AA+LG  TA+I
Sbjct: 1  MSAEFDVVVIGAGPGGYVCAIRAAQLGFKTAII 33


>gi|86609574|ref|YP_478336.1| succinate dehydrogenase flavoprotein subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558116|gb|ABD03073.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 571

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 69/211 (32%), Gaps = 49/211 (23%)

Query: 5   SYDVIVIGGGHAGCEAAA------------------------VAAKLGASTALITHKTST 40
            +D+++IGGG AGC AA                         VAA+ G + AL       
Sbjct: 3   EHDIVIIGGGLAGCRAALEVMRRDPSLDLALVSKTHPIRSHSVAAQGGIAAALQNVDPQD 62

Query: 41  IGSMSCNPAIGG-------LGKGHLVREI--DALDGLMGRVADAAGIQFRVLNVKKGPAV 91
                    + G            L RE     +D     V  +     R+     G   
Sbjct: 63  SWEAHAFDTVKGSDYLADQDAVEILAREAPEVIIDLEHLGVLFSRLPDGRIAQRAFGGHS 122

Query: 92  RGPRTQADRELYRLAMQREILSQENLDVI------QGEVAGFNTEKNIISSIVMQDNS-- 143
             PRT    +    A+  E++S  NL         +  V     E N +  +VM + +  
Sbjct: 123 H-PRTCYAADKTGQAILHELVS--NLKRFGVKLYSEWYVLDLILEDNQVQGVVMLEQASG 179

Query: 144 ---MIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              ++R   V+L TG +  G I+       A
Sbjct: 180 RLEVLRAKAVMLATGGY--GRIYNSTSNDFA 208


>gi|15921387|ref|NP_377056.1| hypothetical protein ST1130 [Sulfolobus tokodaii str. 7]
 gi|15622173|dbj|BAB66165.1| 433aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 433

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IG GH G  +A   AK G    +I
Sbjct: 2  NYDVIIIGAGHNGLVSANYLAKHGLKVLVI 31


>gi|152976915|ref|YP_001376432.1| succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152025667|gb|ABS23437.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|87123052|ref|ZP_01078903.1| putative sarcosine oxidase [Synechococcus sp. RS9917]
 gi|86168772|gb|EAQ70028.1| putative sarcosine oxidase [Synechococcus sp. RS9917]
          Length = 395

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 8  VIVIGGGHAGCEAAAVAAK--LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          V+++GGG AG   AA  A+  +G    L     +  G+ S        G+  + RE+   
Sbjct: 12 VVIVGGGMAGLSCAAALARQDVGDVVLLEAQTLAHAGASSF-------GESRMYREM-YS 63

Query: 66 DGLMGRVADAAGIQFRVLNVKKGPAVRGP 94
          D ++ R+A  A   +R      G A+R P
Sbjct: 64 DPVLCRLAQEANRLWREEERHAGEALREP 92


>gi|94313260|ref|YP_586469.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Cupriavidus metallidurans CH34]
 gi|93357112|gb|ABF11200.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein, oxidoreductase (AsfA-like), putative
           L-aspartate oxidase [Cupriavidus metallidurans CH34]
          Length = 549

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 56/184 (30%), Gaps = 45/184 (24%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA-- 64
           DV+VIGGG AG  AA  A + GA+  ++  K        C  +      G  V  I    
Sbjct: 20  DVLVIGGGPAGTWAALEAVRNGATNVVLAEK------GYCGSSGATAAAGTTVWYISPDE 73

Query: 65  ------------LDG------LMGRVADAAGIQFRVLNVKKGP-----AVRGPRTQADRE 101
                       + G       M RV D        L     P       R  R      
Sbjct: 74  GKRETAMDSRYDMGGRLADYRWMERVLDRTWHGMNELADHGYPFPLDATGRSQRVSLQGP 133

Query: 102 LYRLAMQ--------REILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVV 151
            Y   M+        + +     L+++Q      +        +  Q+     +R   VV
Sbjct: 134 EYMRLMRKRVVQAGVKILDQSPALELLQA--DDGSVAGAR--GVHRQNGSQWRVRSKAVV 189

Query: 152 LTTG 155
           + TG
Sbjct: 190 IATG 193


>gi|300857656|ref|YP_003782639.1| dihydrolipoamide dehydrogenase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685110|gb|ADK28032.1| dihydrolipoamide dehydrogenase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302329949|gb|ADL20143.1| Dihydrolipoamide dehydrogenase [Corynebacterium pseudotuberculosis
           1002]
          Length = 469

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           +   YDV+V+G G  G  AA  AA+LG   A++  +        +G +     +      
Sbjct: 1   MTEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVVEKQYWGGVCLNVGCIPSKALLKNAEVA 60

Query: 57  HLVREIDALDGLMGRVA-DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
           H+        G+ G V+ D      R   V  G           + ++ L  + +I   +
Sbjct: 61  HIFNHEAKTFGISGDVSFDFGVAHKRSRKVSSG---------IVKGVHYLMKKNKITEID 111

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKI 169
            L   +       +E       V  D+ +I   +VV +  G  + G I   + +I
Sbjct: 112 GLGSFKDAKTIEISEGKDAGKTVTFDDCIIATGSVVCSLPGVEIGGNIVSFEEQI 166


>gi|282858140|ref|ZP_06267335.1| hypothetical protein HMPREF7215_0203 [Pyramidobacter piscolens
           W5455]
 gi|282584062|gb|EFB89435.1| hypothetical protein HMPREF7215_0203 [Pyramidobacter piscolens
           W5455]
          Length = 798

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 133/432 (30%), Gaps = 67/432 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID- 63
           ++DV+VIGGG AG  AAA AA+ GA T L+         +     I G G+ +   + + 
Sbjct: 15  TFDVVVIGGGPAGMMAAARAAQYGARTVLLEKNRE----LGRKLMITGRGRCNFAHDQED 70

Query: 64  --------ALDGLMGRVADAAGIQFRV----LNVKKGPA-VRG----PRTQADRELYRLA 106
                      G     A             L      A  RG    PR   D      A
Sbjct: 71  PELLSKGYRRGGEFLLPALRTFGAKETAAFFLRRGVVSAHERGHRLYPREGQDASSVVNA 130

Query: 107 MQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG----TFLRGV 161
           +   +     + V++G EV   +     +  +       I     +L TG          
Sbjct: 131 LWTALKDG-GVQVLRGIEVRSLDILGGKVRRVTTGR-EEIEGRAFILATGGLSFPHTGST 188

Query: 162 IHIGKLKIPAGRMGDSPSNSLF--NSFMKFDFDTGRLKTG---TPARLDGKTIIWDKTEK 216
               +    AG      + +L       +FD     LK        R +G+T+      +
Sbjct: 189 GDGYRWARKAGHEIVETTPALCPIKIAERFDDQLSGLKLKNVRVTVRQNGETVD-----E 243

Query: 217 QFADERLIPFSFMTDKITNRQIECG--ITRTNLETHRIIMENIKHSAIYSGDIKSYGPRY 274
           +F +    PF      + +     G  + +T   T  I ++           I+     +
Sbjct: 244 RFGEMDFTPFGISGAIVMDLAASVGNCLRKTGRTTVHIDLKPALEPERLDARIERDFREF 303

Query: 275 CPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP------- 327
                   +RF  R      + PE L    +           E +      I        
Sbjct: 304 GGDA----LRFALRKMLPAQIIPEALKMAKLDMGKPCGETTAEERLALRNMIKDFVVTPT 359

Query: 328 ---GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE------EA 378
              G     I+  G  +  D I P     T+ +K +  L+ AG++    G        E 
Sbjct: 360 ELLGFRHA-IVTSG-GVSTDGIEP----ETMASKIVPNLYFAGEMIDVDGPTGGYNLQEC 413

Query: 379 AAQGLVAGINSA 390
            + G  AG  +A
Sbjct: 414 WSTGFTAGSAAA 425


>gi|260773916|ref|ZP_05882831.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          metschnikovii CIP 69.14]
 gi|260610877|gb|EEX36081.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          metschnikovii CIP 69.14]
          Length = 437

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH----------KTSTIGSMSC 46
          M+   YDVI+IG G AG  A     + G  T LI+               +G + C
Sbjct: 1  MM--KYDVIIIGAGIAGYSAGIRCLQAGLKTTLISQGQSALHFSSGSIDVLGKLPC 54


>gi|254788431|ref|YP_003075860.1| hypothetical protein TERTU_4635 [Teredinibacter turnerae T7901]
 gi|237685649|gb|ACR12913.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 391

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-EID 63
          ++DVIVIG G AG   AA A   G    ++               + G G+ +    EI 
Sbjct: 2  TWDVIVIGAGAAGLMCAATAGARGRRVLVV----DHANKAGKKILMSGGGRCNFTNMEIA 57

Query: 64 A 64
          A
Sbjct: 58 A 58


>gi|229585991|ref|YP_002844493.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.16.27]
 gi|228021041|gb|ACP56448.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.16.27]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  +++D I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTFDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|227828784|ref|YP_002830564.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.14.25]
 gi|238620976|ref|YP_002915802.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus M.16.4]
 gi|227460580|gb|ACP39266.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.14.25]
 gi|238382046|gb|ACR43134.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus M.16.4]
          Length = 325

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  +++D I++G G AG  AA  +++   ST +++   
Sbjct: 1  MPLKTFDTIIVGAGIAGLSAALYSSRQKLSTLVLSKDL 38


>gi|225163397|ref|ZP_03725715.1| hypothetical protein ObacDRAFT_7292 [Opitutaceae bacterium TAV2]
 gi|224801985|gb|EEG20263.1| hypothetical protein ObacDRAFT_7292 [Opitutaceae bacterium TAV2]
          Length = 561

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS--CNPAIGGLGKGHLVR 60
           N  +DVIV GGG +G  AA  AA+ G+ T L+       G        A+     GH   
Sbjct: 79  NGHFDVIVCGGGPSGVAAALAAARRGSRTLLV----ERYGFCGGMATAALVNPFSGHAFH 134

Query: 61  EIDALDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQAD----RELYRLAMQR--- 109
           +  A    +G+ A   G  F+     L+   G          D    + +Y  A+     
Sbjct: 135 DQLA---PVGKRASLIGGIFKEVALALHAGGGFGSVLMDAAFDEELLKRIYDAALVEAGV 191

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKI 169
            +L    L  ++   +        I++I             V  +G     +  +     
Sbjct: 192 TVLYHTYLTGVRMSASSGIGRIAEITTISKGGGGAFSADVFVDCSGD--GDLAAMAGCPF 249

Query: 170 PAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPAR 203
             GR GD  + ++  SF   + D   +      R
Sbjct: 250 SVGRAGDGLTQAMTVSFRMANVDKRAMLAAGGMR 283


>gi|153868750|ref|ZP_01998497.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Beggiatoa sp. PS]
 gi|152074661|gb|EDN71495.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Beggiatoa sp. PS]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +I+  YDV+++G G AG  A    A+ G +TA IT
Sbjct: 8  IIDHRYDVVIVGAGGAGLRATVGMAEKGLTTACIT 42


>gi|304569546|ref|NP_441659.2| 43 kD bacteriochlorophyll synthase subunit [Synechocystis sp. PCC
           6803]
 gi|2493698|sp|Q55087|CHLP_SYNY3 RecName: Full=Geranylgeranyl diphosphate reductase; AltName:
           Full=Geranylgeranyl reductase
 gi|1332619|emb|CAA66615.1| geranylgeranyl hydrogenase [Synechocystis sp. PCC 6803]
          Length = 407

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG AG  AA +  K G  T L   K     +  C    GG     +V E D    
Sbjct: 5   VAVVGGGPAGSSAAEILVKAGIETYLFERKLD--NAKPC----GGAIPLCMVDEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++        G   + D   Y    +RE+L 
Sbjct: 55  LPPEIIDRRVRKMKMISPSNIEVNIGQTLKDD--EYIGMCRREVLD 98


>gi|89093142|ref|ZP_01166092.1| glutathione reductase [Oceanospirillum sp. MED92]
 gi|89082438|gb|EAR61660.1| glutathione reductase [Oceanospirillum sp. MED92]
          Length = 452

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    +D+ VIG G  G  AA +AA +G   A+
Sbjct: 1  MAEYDFDLFVIGAGSGGVRAARMAAGMGVKVAI 33


>gi|298506483|gb|ADI85206.1| 2-oxoglutarate dehydrogenase complex, E3 protein, lipoamide
          dehydrogenase [Geobacter sulfurreducens KN400]
          Length = 472

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  +++D+IVIG G  G  AA  AA+LG + A+   
Sbjct: 1  MAEQTFDLIVIGAGPGGYVAAIRAAQLGMTVAVAEQ 36


>gi|289643555|ref|ZP_06475671.1| putative signal peptide protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506621|gb|EFD27604.1| putative signal peptide protein [Frankia symbiont of Datisca
           glomerata]
          Length = 442

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 8/178 (4%)

Query: 20  AAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADA--- 75
           AA   A+LG +  LI   T+     +         G  HL +    L  +   +      
Sbjct: 3   AALALARLGHTVTLIERDTAVRPARLDEAGGWRRTGVAHLHQPHAFLARIHAELRAVLPD 62

Query: 76  AGIQFRVLNVKKGPAVRGPRT-QADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
                R     + P   G R+ +  R      ++R++ +Q  +++  G V    T +   
Sbjct: 63  TLDALRAAGAVEVPLPDGTRSLRCRRSTLEWVLRRDVETQPGIELRAGTVQRVETRRGTA 122

Query: 135 SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFD 192
             + + +  +     V+   G   R        +   G    +    +   +      
Sbjct: 123 VGVHLAEGGLRPADLVIDAGGRRSR---LTTGARDAEGFDEPANEVYVSRRYRLLPGR 177


>gi|240851384|ref|YP_002972787.1| dihydrolipoamide dehydrogenase [Bartonella grahamii as4aup]
 gi|240268507|gb|ACS52095.1| dihydrolipoamide dehydrogenase [Bartonella grahamii as4aup]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIG G  G  AA  AA+LG   A+I
Sbjct: 2  SYDVAVIGAGPGGYVAAIKAAQLGLKVAII 31


>gi|218674777|ref|ZP_03524446.1| putative oxidoreductase [Rhizobium etli GR56]
          Length = 424

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV +IG G  G  AA   AK G    ++  +    G+   N      G  H      A
Sbjct: 25 HYDVAIIGAGFTGLAAARQLAKAGVKVVVLEAERVGWGASGRNGGHLNNGLAHSFLSAKA 84

Query: 65 LDG 67
            G
Sbjct: 85 ALG 87


>gi|159128567|gb|EDP53681.1| FAD monooxygenase, putative [Aspergillus fumigatus A1163]
          Length = 671

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV+++G G +G  AAA  +++G  T +I  K
Sbjct: 8  DVLIVGAGPSGLMAAAWMSRMGVKTIMIDQK 38


>gi|188991283|ref|YP_001903293.1| Putative pyridine nucleotide-disulphide oxidoreductase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167733043|emb|CAP51241.1| Putative pyridine nucleotide-disulphide oxidoreductase [Xanthomonas
           campestris pv. campestris]
          Length = 393

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 14/147 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSTRCDVLVIGAGAAGLMSAFTAGRRGRQVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   DV 
Sbjct: 57  GTTPANFVSANRHFCKSAL---------ARYTPGAFVEMVEQHGIAYHEKELGQLFCDVS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRC 147
             ++     ++   + + ++    ++ 
Sbjct: 108 SKQIVRMLLDECEAAGVQIRTQCEVQA 134


>gi|163869360|ref|YP_001610616.1| dihydrolipoamide dehydrogenase [Bartonella tribocorum CIP 105476]
 gi|161019063|emb|CAK02621.1| dihydrolipoamide dehydrogenase [Bartonella tribocorum CIP 105476]
          Length = 468

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV VIG G  G  AA  AA+LG   A+I
Sbjct: 2  SYDVAVIGAGPGGYVAAIKAAQLGLKVAII 31


>gi|149926157|ref|ZP_01914419.1| dihydrolipoamide dehydrogenase [Limnobacter sp. MED105]
 gi|149824975|gb|EDM84187.1| dihydrolipoamide dehydrogenase [Limnobacter sp. MED105]
          Length = 478

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++  YDV+VIG G  G  AA  A +LG   A I   
Sbjct: 1  MSTQYDVVVIGAGPGGYIAAIRAGQLGMKVACIEGN 36


>gi|147777316|emb|CAN69313.1| hypothetical protein VITISV_011073 [Vitis vinifera]
          Length = 504

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 17/190 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E +A+D
Sbjct: 89  DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP---------NNYGVWVDEFEAMD 139

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L       +G    + +  K    R       + L    MQ+ IL+   +   Q +V  
Sbjct: 140 LLDCLDTTWSGAVVFIDDHSKKDLGRPYARVNRKLLKSKMMQKCILN--GVKFHQAKVIK 197

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E++  S ++  D   I+ + V+  TG F R ++   K   P           L    
Sbjct: 198 VIHEESK-SLLICNDGVTIQAAVVLDATG-FSRCLVQYDK---PYNPGYQVAYGILAEV- 251

Query: 187 MKFDFDTGRL 196
            +  FD  ++
Sbjct: 252 EEHPFDVDKM 261


>gi|46093479|dbj|BAD14936.1| glutathione reductase [Brassica oleracea]
          Length = 500

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           +  +D+ VIG G  G  AA  +A  GA   +       I     +  IGG+G     +G 
Sbjct: 24  HYDFDLFVIGAGSGGVRAARFSANNGAKVGICELPFHPIS----SEEIGGVGGTCVIRGC 79

Query: 58  LVREIDALDG-LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + ++I        G + DA    + +         +  + + D  L    + + +L+   
Sbjct: 80  VPKKILVYGATYGGELEDARNYGWEINENVDFTWKKLLQKKTDEILRLNNIYKRLLANAA 139

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           + + +GE  G     N +  +   D +        +++ TG+
Sbjct: 140 VKLYEGE--GRIVGPNEVE-VRQIDGTKISYTAKHILIATGS 178


>gi|70988579|ref|XP_749150.1| FAD monooxygenase [Aspergillus fumigatus Af293]
 gi|66846781|gb|EAL87112.1| FAD monooxygenase, putative [Aspergillus fumigatus Af293]
          Length = 671

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV+++G G +G  AAA  +++G  T +I  K
Sbjct: 8  DVLIVGAGPSGLMAAAWMSRMGVKTIMIDQK 38


>gi|323486826|ref|ZP_08092144.1| hypothetical protein HMPREF9474_03895 [Clostridium symbiosum
           WAL-14163]
 gi|323399839|gb|EGA92219.1| hypothetical protein HMPREF9474_03895 [Clostridium symbiosum
           WAL-14163]
          Length = 649

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+VIGGG AG EAA   A  G    L
Sbjct: 391 VLVIGGGPAGMEAAITLADRGHQVIL 416


>gi|315635724|ref|ZP_07890987.1| fumarate reductase subunit A [Arcobacter butzleri JV22]
 gi|315480021|gb|EFU70691.1| fumarate reductase subunit A [Arcobacter butzleri JV22]
          Length = 661

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +Y D +VIGGG AG  AA  A K G ST +++ 
Sbjct: 1  MKINYCDALVIGGGLAGLRAAVAAQKKGLSTIVLSL 36


>gi|303245921|ref|ZP_07332203.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
 gi|302492704|gb|EFL52572.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
          Length = 526

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +D+I++G G AG  AA  AA+ G    + 
Sbjct: 4  HDLIIVGAGPAGLSAAIEAARRGLDVVVF 32


>gi|301058772|ref|ZP_07199759.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300447114|gb|EFK10892.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 743

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           DV+V+GGG AG  AA   AK G    L+  K   +G
Sbjct: 139 DVLVVGGGIAGMTAALETAKAGYKAILVE-KEDKLG 173


>gi|296391660|ref|ZP_06881135.1| dihydrolipoamide dehydrogenase [Pseudomonas aeruginosa PAb1]
          Length = 466

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           SYDVIVIG G  G  AA  A +LG   A +
Sbjct: 2  ESYDVIVIGAGPGGYNAAIRAGQLGLKVACV 32


>gi|311743192|ref|ZP_07717000.1| dihydrolipoyl dehydrogenase [Aeromicrobium marinum DSM 15272]
 gi|311313872|gb|EFQ83781.1| dihydrolipoyl dehydrogenase [Aeromicrobium marinum DSM 15272]
          Length = 459

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V +IGGG  G EAA VAA+LGA   ++
Sbjct: 7  VAIIGGGPGGYEAALVAARLGAEVTVV 33


>gi|255024012|ref|ZP_05295998.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J1-208]
          Length = 89

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
               D IVIG G  G  AA  AA+LG    +I       G    ++ C P+   +  GH
Sbjct: 6  FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KEYYGGVCLNVGCIPSKALITIGH 63

Query: 58 LVREIDALDGLMGRVADAAGIQF 80
            +E    D  MG  AD   + F
Sbjct: 64 RFKEAGHSDN-MGITADNVNLDF 85


>gi|229098973|ref|ZP_04229908.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-29]
 gi|229105140|ref|ZP_04235791.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-28]
 gi|229118002|ref|ZP_04247362.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock1-3]
 gi|228665451|gb|EEL20933.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock1-3]
 gi|228678321|gb|EEL32547.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-28]
 gi|228684471|gb|EEL38414.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus
          Rock3-29]
          Length = 597

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          IV+GGG AG  A   AA+ G +  L +          C    G  G  +   E D
Sbjct: 6  IVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 59


>gi|295839754|ref|ZP_06826687.1| 3-ketosteroid-delta-1-dehydrogenase [Streptomyces sp. SPB74]
 gi|197698445|gb|EDY45378.1| 3-ketosteroid-delta-1-dehydrogenase [Streptomyces sp. SPB74]
          Length = 553

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DVIVIGGG AG  A A  A  G    ++  +         + + GG
Sbjct: 6  DVIVIGGGLAGLAATAELADAGRKVIVLDQEPEQSLGGQAHWSFGG 51


>gi|21328656|gb|AAM48662.1| geranylgeranyl bacteriochlorophyll reductase [uncultured marine
          proteobacterium]
          Length = 392

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DV+VIGGG +G  AA   A+ G   AL+
Sbjct: 2  FDVVVIGGGPSGATAAEDLARSGHHVALL 30


>gi|73670065|ref|YP_306080.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
 gi|72397227|gb|AAZ71500.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
          Length = 792

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +V++IGGG AG EAA   A+ G    ++  K STIG
Sbjct: 142 NVLIIGGGVAGIEAALNLAEAGFPVTMVE-KESTIG 176


>gi|28198269|ref|NP_778583.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          Temecula1]
 gi|182680906|ref|YP_001829066.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          M23]
 gi|28056339|gb|AAO28232.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          Temecula1]
 gi|182631016|gb|ACB91792.1| succinate dehydrogenase, flavoprotein subunit [Xylella fastidiosa
          M23]
 gi|307579374|gb|ADN63343.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
          subsp. fastidiosa GB514]
          Length = 596

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A  G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAHKGLQTVCLT 40


>gi|20091692|ref|NP_617767.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
 gi|41017214|sp|Q8TM02|HDRA_METAC RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|19916866|gb|AAM06247.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
          Length = 793

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +V++IGGG AG EAA   A+ G    ++  K STIG
Sbjct: 142 NVLIIGGGVAGIEAALNLAEAGFPVTMVE-KESTIG 176


>gi|315452746|ref|YP_004073016.1| pyridine nucleotide-disulfide oxidase,NADH dehydrogenase
          [Helicobacter felis ATCC 49179]
 gi|315131798|emb|CBY82426.1| pyridine nucleotide-disulfide oxidase,NADH dehydrogenase
          [Helicobacter felis ATCC 49179]
          Length = 451

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          ++  YD++VIG G AG   A +AAK G   ALI       G    ++ C P+
Sbjct: 1  MSYEYDLVVIGFGKAGKTLATMAAKKGQKVALIEQSKEMYGGTCINIGCIPS 52


>gi|307293148|ref|ZP_07572994.1| dihydrolipoamide dehydrogenase [Sphingobium chlorophenolicum L-1]
 gi|306881214|gb|EFN12430.1| dihydrolipoamide dehydrogenase [Sphingobium chlorophenolicum L-1]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDVIV+G G  G  AA  AA+LG  TA++
Sbjct: 1  MAENYDVIVLGSGPGGYVAAIRAAQLGLKTAIV 33


>gi|302799575|ref|XP_002981546.1| hypothetical protein SELMODRAFT_114647 [Selaginella
          moellendorffii]
 gi|300150712|gb|EFJ17361.1| hypothetical protein SELMODRAFT_114647 [Selaginella
          moellendorffii]
          Length = 545

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R +D +V+GGGH G  AAA  A+ G + A++
Sbjct: 1  RKWDALVVGGGHNGLTAAAYLARAGLAVAVL 31


>gi|296171819|ref|ZP_06852933.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295893955|gb|EFG73723.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 479

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD++VIG G  G +AA  +AKLG S A++
Sbjct: 13 QEYDMVVIGSGPGGQKAAIASAKLGKSVAVV 43


>gi|289548961|ref|YP_003473949.1| dihydrolipoamide dehydrogenase [Thermocrinis albus DSM 14484]
 gi|289182578|gb|ADC89822.1| dihydrolipoamide dehydrogenase [Thermocrinis albus DSM 14484]
          Length = 463

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +D++++G G  G EA   A + G   A +     T+G
Sbjct: 2  EFDLVIVGAGSGGYEAGLYAHRRGMKVAFVELSPETVG 39


>gi|289547862|ref|YP_003472850.1| geranylgeranyl reductase [Thermocrinis albus DSM 14484]
 gi|289181479|gb|ADC88723.1| geranylgeranyl reductase [Thermocrinis albus DSM 14484]
          Length = 362

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD +VIG G  G  AA   A+ G    LI  KT
Sbjct: 3  YDAVVIGAGPGGSSAARSLAQKGLKVLLIERKT 35


>gi|283955117|ref|ZP_06372619.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 414]
 gi|283793330|gb|EFC32097.1| fumarate reductase, flavoprotein subunit [Campylobacter jejuni
          subsp. jejuni 414]
          Length = 663

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGL 53
          +N  Y D +VIGGG AG  AA   AK G S  L+       +H  +  G M  +   G  
Sbjct: 1  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHSAAVQGGMQASLGNGAK 60

Query: 54 GKG 56
          G+G
Sbjct: 61 GEG 63


>gi|170696265|ref|ZP_02887397.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Burkholderia graminis C4D1M]
 gi|170138825|gb|EDT07021.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Burkholderia graminis C4D1M]
          Length = 390

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA----IGGLGKGHL 58
           ++++D  VIGGG  G  AA    + G   AL+    + + + +   +    +    +  L
Sbjct: 5   HQTFDAAVIGGGLVGKTAALALTQGGLRVALLAQACAPLAAGASFDSRVYALSSSSQALL 64

Query: 59  VREIDALDGL----MGRVADA--AGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREI 111
            R +     L    +G V D    G     L+     A V       +  +   A+   +
Sbjct: 65  ER-LRVWQALDLSRLGPVYDMRVYGDAHAELHFSAFQASVPQLAWIVESSVIERALDAAL 123

Query: 112 LSQENLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
             Q NL  I  + +   F  E    +S+ + + +++    VV   G  
Sbjct: 124 RFQPNLTWIDSRAQALDFTAES---ASVDLANGNVLVADLVVGADGAH 168


>gi|163792311|ref|ZP_02186288.1| alpha-ketoglutarate decarboxylase [alpha proteobacterium BAL199]
 gi|159182016|gb|EDP66525.1| alpha-ketoglutarate decarboxylase [alpha proteobacterium BAL199]
          Length = 469

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YD++VIG G  G  AA  AA+LG   A +
Sbjct: 1  MSDTYDLVVIGAGPGGYVAAIRAAQLGLKVACV 33


>gi|150007340|ref|YP_001302083.1| dihydrolipoamide dehydrogenase [Parabacteroides distasonis ATCC
          8503]
 gi|301310659|ref|ZP_07216598.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 20_3]
 gi|149935764|gb|ABR42461.1| dihydrolipoamide dehydrogenase [Parabacteroides distasonis ATCC
          8503]
 gi|300832233|gb|EFK62864.1| dihydrolipoyl dehydrogenase [Bacteroides sp. 20_3]
          Length = 451

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD+ +IGGG AG  AA  A++ G  T L    
Sbjct: 1  MYMEYDIAIIGGGPAGYTAAERASENGLKTILFEKN 36


>gi|148259553|ref|YP_001233680.1| FAD dependent oxidoreductase [Acidiphilium cryptum JF-5]
 gi|146401234|gb|ABQ29761.1| gamma-glutamylputrescine oxidase [Acidiphilium cryptum JF-5]
          Length = 419

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV +IG G  GC AA   A+ G    ++  +    G+   N
Sbjct: 27 DVAIIGAGMTGCSAALHLAERGYRVVVLEGERIGFGASGRN 67


>gi|319427830|gb|ADV55904.1| flavocytochrome c, flavin subunit [Shewanella putrefaciens 200]
          Length = 555

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  A + GA+ A +
Sbjct: 82  TQTFDVVVVGAGASGVPAALSARESGATVACL 113


>gi|116328747|ref|YP_798467.1| dihydrolipoamide dehydrogenase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116121491|gb|ABJ79534.1| Dihydrolipoamide dehydrogenase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
          Length = 467

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV+VIG G  G   A  AA+LG  TA+I
Sbjct: 1  MSAEFDVVVIGAGPGGYVCAIRAAQLGFKTAII 33


>gi|94971330|ref|YP_593378.1| dihydrolipoamide dehydrogenase [Candidatus Koribacter versatilis
          Ellin345]
 gi|94553380|gb|ABF43304.1| Dihydrolipoamide dehydrogenase [Candidatus Koribacter versatilis
          Ellin345]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YDV++IG G AG  AA  A + G  TALI
Sbjct: 1  MPDTIYDVVIIGSGPAGYTAAIRAGQFGLKTALI 34


>gi|41408927|ref|NP_961763.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium avium
          subsp. paratuberculosis K-10]
 gi|118465723|ref|YP_882783.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium avium
          104]
 gi|41397286|gb|AAS05146.1| hypothetical protein MAP_2829 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|118167010|gb|ABK67907.1| soluble pyridine nucleotide transhydrogenase (STH)(NAD(P)(+)
          transhydrogenase [B-specific]) [Mycobacterium avium
          104]
          Length = 471

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YD++VIG G  G +AA  +AKLG S A++
Sbjct: 5  QEYDMVVIGSGPGGQKAAIASAKLGKSVAVV 35


>gi|120597387|ref|YP_961961.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Shewanella sp. W3-18-1]
 gi|120557480|gb|ABM23407.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Shewanella sp. W3-18-1]
          Length = 555

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  A + GA+ A +
Sbjct: 82  TQTFDVVVVGAGASGVPAALSARESGATVACL 113


>gi|146294473|ref|YP_001184897.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Shewanella putrefaciens
           CN-32]
 gi|145566163|gb|ABP77098.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Shewanella putrefaciens CN-32]
          Length = 557

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +++DV+V+G G +G  AA  A + GA+ A +
Sbjct: 84  TQTFDVVVVGAGASGVPAALSARESGATVACL 115


>gi|298490466|ref|YP_003720643.1| succinate dehydrogenase or fumarate reductase flavoprotein
          subunit ['Nostoc azollae' 0708]
 gi|298232384|gb|ADI63520.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit ['Nostoc azollae' 0708]
          Length = 596

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAK----LGASTALITH 36
          ++   YDVI++GGG AGC A    ++    L  +    TH
Sbjct: 20 LMMLEYDVIIVGGGLAGCRAGVEISRTNPSLNVAVVAKTH 59


>gi|326202684|ref|ZP_08192552.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987268|gb|EGD48096.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium papyrosolvens
           DSM 2782]
          Length = 653

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++GGG  GCE AA  A+ G    ++  +  
Sbjct: 518 VVILGGGLVGCETAAHLARRGKKVTIVEMRQD 549


>gi|253576224|ref|ZP_04853555.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251844351|gb|EES72368.1| pyridine nucleotide-disulphide oxidoreductase [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 748

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+ V+GGG  G  AA  AA+LG   ALI
Sbjct: 11 DLTVVGGGMPGICAAIQAARLGLKVALI 38


>gi|226365732|ref|YP_002783515.1| flavoprotein disulfide reductase [Rhodococcus opacus B4]
 gi|226244222|dbj|BAH54570.1| putative oxidoreductase [Rhodococcus opacus B4]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA VAA+ GAS +LI
Sbjct: 4  IVIIGGGPAGYEAALVAAQHGASVSLI 30


>gi|183982014|ref|YP_001850305.1| soluble pyridine nucleotide transhydrogenase SthA [Mycobacterium
          marinum M]
 gi|183175340|gb|ACC40450.1| soluble pyridine nucleotide transhydrogenase SthA [Mycobacterium
          marinum M]
          Length = 471

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD++VIG G  G +AA  +AKLG S A+I
Sbjct: 5  REYDMVVIGSGPGGQKAAIASAKLGKSVAII 35


>gi|188583474|ref|YP_001926919.1| succinate dehydrogenase flavoprotein subunit [Methylobacterium
           populi BJ001]
 gi|179346972|gb|ACB82384.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
           populi BJ001]
          Length = 605

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 60/223 (26%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLG--- 54
           + ++DV+++G G AG  A    ++ G  TA IT     ++ T+ +    + ++G +G   
Sbjct: 17  DHTFDVVIVGAGGAGLRATVGCSQAGLRTACITKVFPTRSHTVAAQGGISASLGNMGPDD 76

Query: 55  ---------KGH------------------LVREIDALD-----GLMGRVADAAGIQFRV 82
                    KG                    V E++           G++          
Sbjct: 77  WRWHMYDTVKGSDWLGDQDAIEYLVRNAPAAVYELEHWGVPFSRTEEGKIYQRPFGGM-T 135

Query: 83  LNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFN-TEKNII 134
            +  KG A R     ADR        LY  A++ +         I+         E    
Sbjct: 136 TDYGKGTAQRTCAA-ADRTGHAMLHTLYGQAVKNKTQ-----FFIEYFALDLIMDEDGRC 189

Query: 135 SSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++       +    R    +L TG + R            G
Sbjct: 190 RGVIAIDQATGEIHRFRAQQTILATGGYGRAYFSATSAHTCTG 232


>gi|153953379|ref|YP_001394144.1| enoate reductase [Clostridium kluyveri DSM 555]
 gi|219854007|ref|YP_002471129.1| hypothetical protein CKR_0664 [Clostridium kluyveri NBRC 12016]
 gi|146346260|gb|EDK32796.1| Predicted enoate reductase [Clostridium kluyveri DSM 555]
 gi|219567731|dbj|BAH05715.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 667

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+++GGG AGCE A   AK G    +I
Sbjct: 528 NVLMVGGGLAGCETALYLAKQGKKVTII 555


>gi|111023225|ref|YP_706197.1| flavoprotein disulfide reductase [Rhodococcus jostii RHA1]
 gi|110822755|gb|ABG98039.1| dihydrolipoyl dehydrogenase [Rhodococcus jostii RHA1]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA VAA+ GAS +LI
Sbjct: 4  IVIIGGGPAGYEAALVAAQHGASVSLI 30


>gi|323704860|ref|ZP_08116437.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535786|gb|EGB25560.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 602

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 21/80 (26%)

Query: 3   NRSYDV--------IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
            + +DV         VIGGG AG  AA   AK G +  L             + A+GG  
Sbjct: 340 EKEFDVTAENKLNVAVIGGGPAGMSAALYLAKKGHNVELFE----------KSDALGGQL 389

Query: 55  KGHLVREIDALDGLMGRVAD 74
           K   V ++      +G+V D
Sbjct: 390 K---VAKVPPHKSEIGKVVD 406


>gi|319941623|ref|ZP_08015947.1| hypothetical protein HMPREF9464_01166 [Sutterella wadsworthensis
          3_1_45B]
 gi|319804853|gb|EFW01707.1| hypothetical protein HMPREF9464_01166 [Sutterella wadsworthensis
          3_1_45B]
          Length = 492

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IV+G G AG  AA  A  LGA   L 
Sbjct: 42 YDAIVVGAGPAGLIAAITAHDLGAKVVLF 70


>gi|302547945|ref|ZP_07300287.1| oxidoreductase, FAD-binding [Streptomyces hygroscopicus ATCC
          53653]
 gi|302465563|gb|EFL28656.1| oxidoreductase, FAD-binding [Streptomyces himastatinicus ATCC
          53653]
          Length = 427

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          DV VIGGG  G   A   A+ GA   L+       G+   N ++   G      E  
Sbjct: 27 DVAVIGGGLTGLSTALHTARKGADVLLVEKDKIGSGASGRNGSMCTQGITISTGEAR 83


>gi|256819086|ref|YP_003140365.1| succinate dehydrogenase flavoprotein subunit [Capnocytophaga
          ochracea DSM 7271]
 gi|256580669|gb|ACU91804.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Capnocytophaga ochracea DSM 7271]
          Length = 679

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 36 KRNIDVIVVGTGLAGGSAAATLAELGYNVKAFA 68


>gi|227877196|ref|ZP_03995270.1| thioredoxin reductase [Lactobacillus crispatus JV-V01]
 gi|256842750|ref|ZP_05548238.1| thioredoxin-disulfide reductase [Lactobacillus crispatus
          125-2-CHN]
 gi|256848940|ref|ZP_05554374.1| thioredoxin reductase [Lactobacillus crispatus MV-1A-US]
 gi|262045717|ref|ZP_06018681.1| thioredoxin-disulfide reductase [Lactobacillus crispatus
          MV-3A-US]
 gi|293380195|ref|ZP_06626277.1| thioredoxin-disulfide reductase [Lactobacillus crispatus 214-1]
 gi|295692550|ref|YP_003601160.1| thioredoxin reductase [Lactobacillus crispatus ST1]
 gi|312977730|ref|ZP_07789477.1| thioredoxin-disulfide reductase [Lactobacillus crispatus CTV-05]
 gi|227863250|gb|EEJ70695.1| thioredoxin reductase [Lactobacillus crispatus JV-V01]
 gi|256614170|gb|EEU19371.1| thioredoxin-disulfide reductase [Lactobacillus crispatus
          125-2-CHN]
 gi|256714479|gb|EEU29466.1| thioredoxin reductase [Lactobacillus crispatus MV-1A-US]
 gi|260573676|gb|EEX30232.1| thioredoxin-disulfide reductase [Lactobacillus crispatus
          MV-3A-US]
 gi|290923239|gb|EFE00160.1| thioredoxin-disulfide reductase [Lactobacillus crispatus 214-1]
 gi|295030656|emb|CBL50135.1| Thioredoxin reductase [Lactobacillus crispatus ST1]
 gi|310895469|gb|EFQ44536.1| thioredoxin-disulfide reductase [Lactobacillus crispatus CTV-05]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVI+IG G  G  A   AA+      ++
Sbjct: 1  MADKYDVIIIGAGPGGMTAGLYAARANLKILVL 33


>gi|284992164|ref|YP_003410718.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Geodermatophilus obscurus DSM 43160]
 gi|284065409|gb|ADB76347.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Geodermatophilus obscurus DSM 43160]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV V+G G AG  AA VAA+ G      
Sbjct: 1  MSIDWDVAVVGAGIAGLTAARVAAERGLRVVAY 33


>gi|162451991|ref|YP_001614358.1| phytoene dehydrogenase [Sorangium cellulosum 'So ce 56']
 gi|161162573|emb|CAN93878.1| phytoene dehydrogenase [Sorangium cellulosum 'So ce 56']
          Length = 521

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV+++G GH G  AA + A+ G    ++  K   +G             G  V     L 
Sbjct: 11 DVVIVGAGHNGLVAAVLLARRGLDVVVLEEK-DAVGGAVKTEHPFRQAPGLGVSSGAYLL 69

Query: 67 GL 68
          GL
Sbjct: 70 GL 71


>gi|157736561|ref|YP_001489244.1| fumarate reductase flavoprotein subunit [Arcobacter butzleri
          RM4018]
 gi|157698415|gb|ABV66575.1| fumarate reductase, flavoprotein subunit [Arcobacter butzleri
          RM4018]
          Length = 661

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +Y D +VIGGG AG  AA  A K G ST +++ 
Sbjct: 1  MKINYCDALVIGGGLAGLRAAVAAQKKGLSTIVLSL 36


>gi|149912223|ref|ZP_01900802.1| hypothetical protein PE36_14911 [Moritella sp. PE36]
 gi|149804703|gb|EDM64754.1| hypothetical protein PE36_14911 [Moritella sp. PE36]
          Length = 396

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          +++  DVIVIG G AG   AA A   G S  +                I G G+ +
Sbjct: 1  MSQRCDVIVIGAGAAGLMCAASAGYRGRSVLV----LDNAKKAGRKVLISGGGRCN 52


>gi|145220719|ref|YP_001131397.1| dihydrolipoamide dehydrogenase [Mycobacterium gilvum PYR-GCK]
 gi|315442329|ref|YP_004075208.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. Spyr1]
 gi|145213205|gb|ABP42609.1| dihydrolipoamide dehydrogenase [Mycobacterium gilvum PYR-GCK]
 gi|315260632|gb|ADT97373.1| dihydrolipoamide dehydrogenase [Mycobacterium sp. Spyr1]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELAHVF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G V+   G  F
Sbjct: 63 HKDAKTFGISGDVSFDYGAAF 83


>gi|313884397|ref|ZP_07818158.1| thioredoxin-disulfide reductase [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312620181|gb|EFR31609.1| thioredoxin-disulfide reductase [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIVIG G  G  AA  A++    T LI
Sbjct: 12 DVIVIGAGPGGMTAALYASRANLKTILI 39


>gi|310780062|ref|YP_003968394.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
 gi|309749385|gb|ADO84046.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
          Length = 536

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 37/173 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG A   AA  A + GA   ++              +IG  G+      +   D
Sbjct: 12  DVLVIGGGIAAVFAATRATEAGAKVIVVD-----------KGSIGRSGQTPFASGMTIFD 60

Query: 67  GLMGRVADAAGIQFRVL--NVKKGPAVRGPRTQAD--RELYR-------------LAMQR 109
              G   D A    R+L  N KK           D  +E+Y                 + 
Sbjct: 61  EESG--HDRANWH-RILEENSKKLNNPAYLDMYMDYSKEIYSDLEKWGATNTGFGKVFRD 117

Query: 110 EILSQENLDVIQ-GEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGT 156
           ++L+  N+ VI+   +     E   I          ++  +I+  TV+L TG 
Sbjct: 118 KLLANGNIKVIERTMITTLLEENGHIVGATGFKLDSEEAVLIKAKTVILCTGA 170


>gi|296876500|ref|ZP_06900551.1| dihydrolipoyl dehydrogenase [Streptococcus parasanguinis ATCC
           15912]
 gi|296432493|gb|EFH18289.1| dihydrolipoyl dehydrogenase [Streptococcus parasanguinis ATCC
           15912]
          Length = 568

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  +A  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVSAIKAAQLGGKVALV 141


>gi|296133117|ref|YP_003640364.1| HI0933 family protein [Thermincola sp. JR]
 gi|296031695|gb|ADG82463.1| HI0933 family protein [Thermincola potens JR]
          Length = 412

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 133/410 (32%), Gaps = 76/410 (18%)

Query: 30  STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL--------DGLMGRVADAAGIQFR 81
              L                I G G+ +L  E +          +G     A +    + 
Sbjct: 26  RVILFEKNK----QPGKKILITGNGRCNLTNEANLHEFVKSFPGNGPFLYSAFSTFSNWD 81

Query: 82  VLN--VKKGPAVRGPRTQ-----ADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNI 133
           +++   ++G  V+  R        D+    +A+ ++   +  ++   GE V       + 
Sbjct: 82  LISFFSERGLEVKLERGGRFFPVTDKAADVVAVLKKYCLEAGVEFRCGETVEEVIIRDSH 141

Query: 134 ISSIVMQDNSMIRCSTVVLTTG----TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF 189
           +  + +        + V++ TG              ++   AG    +P  +L       
Sbjct: 142 VKGVKLAGGGEEPGNAVIIATGGMSYPSTGSTGDGYRMAEKAGHTIITPKPALV-PLETR 200

Query: 190 DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC--GITRTNL 247
           +     L+  T   +  K I   K       E+     F    ++   I       R NL
Sbjct: 201 EDWVKGLQGLTLQNVLIKVIAAGK----PVGEKSGEMLFTHFGVSGPIILTLSRTVRENL 256

Query: 248 ETHRIIMENIKHSAIYSGDIK------------------SYGPRYCPSIEDKIVRF---- 285
           E  + ++  I     ++ +                    S G     S+   I+R     
Sbjct: 257 ELGQEVVLKINLKPAFTQEQLDNVILRDFEKNRRKQLNNSLGELLPGSLVPVIIRLSNIP 316

Query: 286 GERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDY 345
           G++  HQI          ++       AL + +     R+ P L    +   G +++   
Sbjct: 317 GDKPVHQISKR---ERLRLL-------ALIQGLTITISRSRP-LRDAMVTAGGVSVKE-- 363

Query: 346 INPKELFPTLETKKISGLFLAGQINGTTGYE------EAAAQGLVAGINS 389
           INPK    T+E+K + GL+ AG++    GY        A + G VAG  +
Sbjct: 364 INPK----TMESKLVQGLYFAGEVIDIDGYTGGFNLQAAFSTGYVAGKAA 409


>gi|256380141|ref|YP_003103801.1| dihydrolipoamide dehydrogenase [Actinosynnema mirum DSM 43827]
 gi|255924444|gb|ACU39955.1| dihydrolipoamide dehydrogenase [Actinosynnema mirum DSM 43827]
          Length = 461

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          ++  +DV+V+G G  G  AA  AA+LG  TA++  K        +G +     +      
Sbjct: 1  MSAHFDVVVLGAGPGGYVAAIRAAQLGLKTAVVEEKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HL-VREIDALD 66
          HL   E     
Sbjct: 61 HLFTHEQKTFG 71


>gi|240273090|gb|EER36613.1| squalene epoxidase [Ajellomyces capsulatus H143]
          Length = 484

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLGK 55
           +   DV+++G G AGC  A    K G S  L+     +   I      P    A+  LG 
Sbjct: 31  DHEADVVIVGAGIAGCALAVTLGKQGRSVLLLERWLKEPDRIVGELLQPGGVRALDQLGL 90

Query: 56  GHLVREIDALDGLMGRVADAAG-IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            H + +IDA++     V      +  R    ++G   +G      R  + + ++    + 
Sbjct: 91  KHCLEDIDAIECHGMDVIYHGNEVPIRYPMDEQGSPFKGRSFHHGR--FIMRLRESARAT 148

Query: 115 ENLDVIQGEVAGFNTE--KNIISSIV-MQDNSM--IRCSTVVLTTGTFLRGV 161
            N+ +++            + +  +    +            +  G   +  
Sbjct: 149 PNVTIVETTAVSVIHSSTDSEVLGVQCTTNGQKDYFYAPLTFIADGYASKFR 200


>gi|220907738|ref|YP_002483049.1| carotene isomerase [Cyanothece sp. PCC 7425]
 gi|219864349|gb|ACL44688.1| carotene isomerase [Cyanothece sp. PCC 7425]
          Length = 508

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +I + +D IVIG G  G  AA   A  GA   ++
Sbjct: 10 LIEQEWDAIVIGAGIGGLVAATQLAVKGAKVLVL 43


>gi|187780122|ref|ZP_02996595.1| hypothetical protein CLOSPO_03718 [Clostridium sporogenes ATCC
          15579]
 gi|187773747|gb|EDU37549.1| hypothetical protein CLOSPO_03718 [Clostridium sporogenes ATCC
          15579]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++  YD+I+IG G AG  A   AA+    T ++   
Sbjct: 1  MDNVYDLIIIGSGPAGLSAGLYAARARLKTLILERN 36


>gi|159184862|ref|NP_354649.2| soluble pyridine nucleotide transhydrogenase [Agrobacterium
          tumefaciens str. C58]
 gi|159140143|gb|AAK87434.2| soluble pyridine nucleotide transhydrogenase [Agrobacterium
          tumefaciens str. C58]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +D+IV+G G AG  AA  AAKL     +I
Sbjct: 3  QFDLIVVGSGPAGRRAAIQAAKLEKKVLVI 32


>gi|118472596|ref|YP_885306.1| dihydrolipoamide dehydrogenase [Mycobacterium smegmatis str. MC2
          155]
 gi|118173883|gb|ABK74779.1| dihydrolipoamide dehydrogenase [Mycobacterium smegmatis str. MC2
          155]
          Length = 464

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           +DV+V+G G  G  AA  AA+LG +TA++  K        +G +     +      H+ 
Sbjct: 3  HFDVVVLGAGPGGYVAAIRAAQLGLNTAIVEPKYWGGVCLNVGCIPSKALLRNAEIAHMF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G      G  F
Sbjct: 63 NKEAKTFGISGEATFDYGAAF 83


>gi|58613459|gb|AAW79316.1| chloroplast geranylgeranyl reductase/hydrogenase [Heterocapsa
           triquetra]
          Length = 529

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG  G   A   AK G  T LI  K        C P  GG     +V E D    
Sbjct: 118 VAVIGGGPGGASCADALAKGGCETYLIERKLDN-----CKPC-GGAIPMCMVGEFDLPTD 171

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
           L+ R      +     N      V+  RT  D + Y   ++RE+L  
Sbjct: 172 LIDRKVRKMTMISPTNNE-----VQIGRTLKD-DEYIGMVRREVLDN 212


>gi|71908470|ref|YP_286057.1| dihydrolipoamide dehydrogenase [Dechloromonas aromatica RCB]
 gi|71848091|gb|AAZ47587.1| dihydrolipoamide dehydrogenase [Dechloromonas aromatica RCB]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGS---------MSCNPAI 50
          +++ +DV+VIGGG  G  AA  A++LG   A           G          + C P+ 
Sbjct: 1  MSKQFDVLVIGGGPGGYIAAIRASQLGFLAACAESNPYADPKGEPRLGGTCLNVGCIPSK 60

Query: 51 GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87
            L   HL  E +      G     A I   V+  +K
Sbjct: 61 ALLHTSHLFEEANHSFEAQGIKVGKATIDVPVMKARK 97


>gi|39997541|ref|NP_953492.1| 2-oxoglutarate dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Geobacter sulfurreducens PCA]
 gi|39984432|gb|AAR35819.1| 2-oxoglutarate dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Geobacter sulfurreducens PCA]
          Length = 472

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M  +++D+IVIG G  G  AA  AA+LG + A+   
Sbjct: 1  MAEQTFDLIVIGAGPGGYVAAIRAAQLGMTVAVAEQ 36


>gi|117919937|ref|YP_869129.1| flavocytochrome c [Shewanella sp. ANA-3]
 gi|117612269|gb|ABK47723.1| flavocytochrome c [Shewanella sp. ANA-3]
          Length = 517

 Score = 40.7 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
            +   DV+V+G G AG  AA  A + G S  +       +     N  I G    +    
Sbjct: 44  FDEIVDVLVVGSGFAGMSAALQAREAGVSVMV----IDKMPVFGGNSTINGGAMAVAGSA 99

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKG 88
           L ++    D +   VAD       +L   +G
Sbjct: 100 LQKQAGIEDSVDAMVAD-------MLRAGRG 123


>gi|332876986|ref|ZP_08444739.1| succinate dehydrogenase flavoprotein subunit [Capnocytophaga sp.
          oral taxon 329 str. F0087]
 gi|332685094|gb|EGJ57938.1| succinate dehydrogenase flavoprotein subunit [Capnocytophaga sp.
          oral taxon 329 str. F0087]
          Length = 676

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKAFA 64


>gi|326391558|ref|ZP_08213089.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992388|gb|EGD50849.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 641

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V +IG G AG EAA  AA  G    +   K
Sbjct: 382 VFIIGAGLAGLEAAYTAAARGHKVYIYEEK 411


>gi|315224506|ref|ZP_07866333.1| fumarate reductase subunit A [Capnocytophaga ochracea F0287]
 gi|314945527|gb|EFS97549.1| fumarate reductase subunit A [Capnocytophaga ochracea F0287]
          Length = 675

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKAFA 64


>gi|313147542|ref|ZP_07809735.1| NAD-utilizing dehydrogenase [Bacteroides fragilis 3_1_12]
 gi|313136309|gb|EFR53669.1| NAD-utilizing dehydrogenase [Bacteroides fragilis 3_1_12]
          Length = 557

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 113 VIVVGAGPGGLFAALRLIELGLRPVVVERGKDVRERKKDLAQISREHRVDPESNYSFGEG 172

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 173 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 225

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  +  +        +  +     EK  +  I  Q         V+L TG   R V 
Sbjct: 226 ENMRHTIIECGGEVHFETRMDALIIEKGEVKGIETQTGKTFLGP-VILATGHSARDVY 282


>gi|296532743|ref|ZP_06895425.1| FAD-dependent oxidoreductase [Roseomonas cervicalis ATCC 49957]
 gi|296266936|gb|EFH12879.1| FAD-dependent oxidoreductase [Roseomonas cervicalis ATCC 49957]
          Length = 397

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M  +++D +V+G G AG   A  A + G    ++ H             I G G+ +
Sbjct: 1  MQQQAFDAVVLGAGAAGLMFALQAGQRGLKVLVLDHAP----QAGSKILISGGGRCN 53


>gi|213961839|ref|ZP_03390105.1| succinate dehydrogenase flavoprotein subunit [Capnocytophaga
          sputigena Capno]
 gi|213955628|gb|EEB66944.1| succinate dehydrogenase flavoprotein subunit [Capnocytophaga
          sputigena Capno]
          Length = 675

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVIV+G G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIVVGTGLAGGSAAATLAELGYNVKAFA 64


>gi|212527992|ref|XP_002144153.1| pentachlorophenol 4-monooxygenase, putative [Penicillium marneffei
           ATCC 18224]
 gi|210073551|gb|EEA27638.1| pentachlorophenol 4-monooxygenase, putative [Penicillium marneffei
           ATCC 18224]
          Length = 519

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 2   INRSYDVIVIGGGHAG----CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +N+ YDVI++G G  G    CE     A+  AS  ++             P +G  G   
Sbjct: 1   MNKLYDVIIVGAGPVGLFLACE--LRLAR--ASVLVLDQDLKLESPFKDAP-LGFRGINT 55

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKK-----------GPAVRGPRTQADRELYRL- 105
              E     GL+G   D   ++ RVL ++K           G  +   + + DR  YRL 
Sbjct: 56  SSVESLYRRGLLGEFVD---LEKRVLGLQKTEGFQFGGHFAGIGLNANKLELDRWEYRLP 112

Query: 106 ---AMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
               +  +   Q    V+  +             +  Q  +     +V +  G   +   
Sbjct: 113 GPGLIPHQTTLQHVETVLSKQAEKLGVTVLRSHGV--QHIAAQNDKSVTVEAGETNQSFT 170

Query: 163 HIGKLKIPAGR 173
               +    GR
Sbjct: 171 GKWLVGCDGGR 181


>gi|198435446|ref|XP_002131453.1| PREDICTED: similar to Pipox-prov protein [Ciona intestinalis]
          Length = 388

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
            +DVIV+G G  G   A   AK G ST L+  
Sbjct: 2  EEFDVIVVGAGIIGSWTAYHLAKRGRSTLLLEQ 34


>gi|206561909|ref|YP_002232672.1| putative alcohol dehydrogenase [Burkholderia cenocepacia J2315]
 gi|198037949|emb|CAR53894.1| putative alcohol dehydrogenase [Burkholderia cenocepacia J2315]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YD IV+GGG AGC  A    K G    L+
Sbjct: 2  ETYDHIVVGGGSAGCTVAHRLVKAGRRVLLL 32


>gi|254416981|ref|ZP_05030728.1| geranylgeranyl reductase [Microcoleus chthonoplastes PCC 7420]
 gi|196176148|gb|EDX71165.1| geranylgeranyl reductase [Microcoleus chthonoplastes PCC 7420]
          Length = 436

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 35  VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 84

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++      +         + Y    +REIL 
Sbjct: 85  LPPEIIDRRVRKMKMISPS---NIEVDINLVKEDEYIGMCRREILD 127


>gi|182678388|ref|YP_001832534.1| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634271|gb|ACB95045.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 41/240 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDAL 65
           D++V G G AG   A   AK G S          +GS   +P    +      +R   AL
Sbjct: 25  DILVAGAGAAGLSVAIGLAKSGFSVIC-------VGSTQTHPNGRTVALFEGSLRYYKAL 77

Query: 66  DGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---------- 114
                 R   A   + R+++           + A RE+   A    I +           
Sbjct: 78  GLWPALRAHSAPLKEIRIIDATGARMPINAISFASREIGLPAFGENIENTPLVETLAGIA 137

Query: 115 ---ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
               NL + +  +   + + + +  +++ D + +    +V   G          +     
Sbjct: 138 RDLPNLRLHETLLKDIDFQSDRVE-VILADGTGVTAKLIVAADGRASLAR----RKAGIG 192

Query: 172 GRMGDSPSNSLFNSF----------MKFDFDTGRLKTGTPARLDG----KTIIWDKTEKQ 217
            R    P  +L               ++    G         LD      +++W  +E+Q
Sbjct: 193 ARTWPYPQVALTAFLDHERPHRFISTEYHTRFGPCTLVPLPPLDMHPHRSSLVWLMSEEQ 252


>gi|187920211|ref|YP_001889242.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
 gi|187718649|gb|ACD19872.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
          Length = 441

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 65/214 (30%), Gaps = 52/214 (24%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT------------------HKTST----IG-- 42
           DV+VIG G  G   A   AK G   ALI                            I   
Sbjct: 19  DVVVIGAGIVGVFTAWFLAKRGLKVALIEKGVVGGEQSSRNWGWCRQQNRDARELPIATE 78

Query: 43  ----------SMSCNPAIGGLGKGHLVREIDALDGLM--GRVADAAGIQFRVLNVK---- 86
                         +      G  +L  + D L G       A  AG++  VL  K    
Sbjct: 79  SLRLWQQFEDESGESAGFRRSGLLYLSNDDDELSGWTRWCEFARTAGVKTEVLGSKQANE 138

Query: 87  ---------KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA-GFNTEKNIISS 136
                    KG         AD      A+ R I+      V Q   A G  TE   +S 
Sbjct: 139 RAAATGRNWKGGVFAPTDGTADPANAAPAVARSIIKLGG-TVHQNCAARGIETEGGRVSG 197

Query: 137 IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           +V +   +IR  T VL+ G +         +++P
Sbjct: 198 VVTEQG-VIRTKTAVLSGGAWASTFCRQLDIRLP 230


>gi|78063990|ref|YP_373898.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. 383]
 gi|77971875|gb|ABB13254.1| Glucose-methanol-choline oxidoreductase [Burkholderia sp. 383]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YD IV+GGG AGC  A    K G    L+
Sbjct: 2  ETYDHIVVGGGSAGCTVAHRLVKAGRRVLLL 32


>gi|328951913|ref|YP_004369247.1| thioredoxin reductase [Desulfobacca acetoxidans DSM 11109]
 gi|328452237|gb|AEB08066.1| thioredoxin reductase [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVI+IGGG AG  A   A +    T L+
Sbjct: 1  MSAYDYDVIIIGGGPAGLTAGLYAGRGRFKTLLV 34


>gi|323489376|ref|ZP_08094605.1| thioredoxin reductase [Planococcus donghaensis MPA1U2]
 gi|323396870|gb|EGA89687.1| thioredoxin reductase [Planococcus donghaensis MPA1U2]
          Length = 320

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   +T ++
Sbjct: 5  TKIYDVIIIGAGPAGMTAAVYTSRANLTTLML 36


>gi|319947834|ref|ZP_08022023.1| oxidoreductase [Dietzia cinnamea P4]
 gi|319438504|gb|EFV93435.1| oxidoreductase [Dietzia cinnamea P4]
          Length = 687

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG E+A V A+ G    ++
Sbjct: 392 VVVVGAGPAGLESALVLAERGHRVTVL 418


>gi|317504076|ref|ZP_07962079.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Prevotella salivae DSM 15606]
 gi|315664818|gb|EFV04482.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Prevotella salivae DSM 15606]
          Length = 419

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +D I+IGGG +G   AA+ AK G    L+T   ST+   S +  + G  +G  V 
Sbjct: 3  FDTIIIGGGLSGMTCAAMLAKGGHKVGLVTTGKSTLQFNSGSFDLMGYVEGQAVE 57


>gi|226311563|ref|YP_002771457.1| hypothetical protein BBR47_19760 [Brevibacillus brevis NBRC
          100599]
 gi|226094511|dbj|BAH42953.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV+++GGG AG  +AA  +  G   A++
Sbjct: 1  MTTNHYDVVIVGGGLAGLSSAAYLSSKGKKVAVL 34


>gi|254500928|ref|ZP_05113079.1| oxidoreductase, FAD/FMN-binding family [Labrenzia alexandrii
           DFL-11]
 gi|222436999|gb|EEE43678.1| oxidoreductase, FAD/FMN-binding family [Labrenzia alexandrii
           DFL-11]
          Length = 678

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V+V+G G AG EAA VA++ G    +        G + 
Sbjct: 388 VVVVGAGPAGLEAARVASERGHDVTVFEAAPDAGGQIR 425


>gi|183220536|ref|YP_001838532.1| hypothetical protein LEPBI_I1139 [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910646|ref|YP_001962201.1| phytoene dehydrogenase-like protein [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Ames)']
 gi|167775322|gb|ABZ93623.1| Phytoene dehydrogenase-related protein [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778958|gb|ABZ97256.1| Hypothetical protein LEPBI_I1139 [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 512

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +   +DVIV+G G  G  AA   A  G    ++     +I    C  +    G
Sbjct: 1  METEWDVIVLGSGLGGLSAALAFATKGKRVLVLE---KSISPGGCASSFWKNG 50


>gi|163868331|ref|YP_001609540.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Bartonella tribocorum CIP
           105476]
 gi|161017987|emb|CAK01545.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Bartonella tribocorum CIP
           105476]
          Length = 408

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 53/162 (32%), Gaps = 10/162 (6%)

Query: 3   NRSYDVI-VIGGGHAGCEAAAVAAKLGASTAL---ITHKTSTIGSMSCNPAIGGLGKGHL 58
            + Y  I VIG G  G  AA   A  G S  L     H      +    PAI  L K ++
Sbjct: 5   KKEYKAITVIGAGPVGMLAALRLAHKGFSVFLAGPPAHTDELRTTALMMPAIRTLQKLNV 64

Query: 59  VREID--ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT---QADRELYRLAMQREILS 113
              +   A      R+ D      R   V    A  G +             A+   +  
Sbjct: 65  WNSLQKKAAALSSMRIIDITSRIVRAPTVHFSSAEIGEKAFGYNIPNVELNNALIDAVTQ 124

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             N+     E   F   K+ +S I + D  +I+   V+   G
Sbjct: 125 TPNIKRFFSEAKSFYHTKDHVS-ITLADGKVIQAPFVIAADG 165


>gi|110833716|ref|YP_692575.1| nitrite reductase [NAD(P)H] [Alcanivorax borkumensis SK2]
 gi|110646827|emb|CAL16303.1| nitrite reductase [NAD(P)H] [Alcanivorax borkumensis SK2]
          Length = 659

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 45/147 (30%), Gaps = 55/147 (37%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGG  G EAA    + G +  LI H                             D L
Sbjct: 161 VVIGGGLLGIEAAHGLCRFGTNVTLIQH----------------------------ADRL 192

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
           M R  D+        N+++           D  L             N  V +       
Sbjct: 193 MNRQLDSEAASMVANNLRE--------AGVDIRL-------------NTSVRR------I 225

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTG 155
                + S+V+ D S + C TVV  TG
Sbjct: 226 KGTERVESVVLADGSELPCDTVVFATG 252


>gi|84683773|ref|ZP_01011676.1| selenide, water dikinase, putative [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668516|gb|EAQ14983.1| selenide, water dikinase, putative [Rhodobacterales bacterium
           HTCC2654]
          Length = 728

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V VIGGG AGCE A   +      A +T   + I +            GH+ R + A +G
Sbjct: 157 VAVIGGGVAGCELAMAMSHR-LRAAGLTPSVTLIEAGPDLSGFTPKALGHVRRGL-AQNG 214

Query: 68  LMGRVADA----AGIQFRVLNVKKGPAV 91
           +      A         R+   ++ PA 
Sbjct: 215 VTVLTGAAVEGVTDTAVRLSERRRVPAA 242


>gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1503

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 1  MINRSYDVI----VIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  ++ D+I    V+GGG AG ++A   A+ G    L+   T
Sbjct: 11 MQGKAPDIIGAVAVVGGGIAGMQSALDLARTGFKVYLVEQNT 52


>gi|322371215|ref|ZP_08045767.1| FAD dependent oxidoreductase [Haladaptatus paucihalophilus DX253]
 gi|320549205|gb|EFW90867.1| FAD dependent oxidoreductase [Haladaptatus paucihalophilus DX253]
          Length = 376

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 75  AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134
            A  ++  L   +         + D   +  A+ R   S   L V+ G+V   + E   +
Sbjct: 134 EAQSRYPPLAETRRCRAYDGAARVDARTFTGALLRAGESH-GLTVLDGDVTRIDHENGAV 192

Query: 135 SSIVMQDNSMIRCSTVVLTTGT 156
           + +   D        V +  G 
Sbjct: 193 TGVETTDGGRYESDAVAVAGGA 214


>gi|308271661|emb|CBX28269.1| hypothetical protein N47_G35930 [uncultured Desulfobacterium sp.]
          Length = 988

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           V+V+GGG AG EAA   A+ G    L+            +  +GG+  G
Sbjct: 570 VLVVGGGIAGLEAALGVARQGFDAFLVE----------RSNELGGMALG 608


>gi|296447411|ref|ZP_06889337.1| dihydrolipoamide dehydrogenase [Methylosinus trichosporium OB3b]
 gi|296255114|gb|EFH02215.1| dihydrolipoamide dehydrogenase [Methylosinus trichosporium OB3b]
          Length = 470

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVRE 61
          SYD+IVIG G  G   A  AA+LG  TA++        T G++ C P+   L   H+  E
Sbjct: 2  SYDLIVIGTGPGGYVCAIRAAQLGLKTAVVEKRATHGGTCGNVGCIPSKALLHASHMFDE 61

Query: 62 I 62
          +
Sbjct: 62 V 62


>gi|261856956|ref|YP_003264239.1| FAD dependent oxidoreductase [Halothiobacillus neapolitanus c2]
 gi|261837425|gb|ACX97192.1| FAD dependent oxidoreductase [Halothiobacillus neapolitanus c2]
          Length = 435

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVREIDA 64
           DV ++GGG AG  AA   A  G S  ++  ++   G+   N    I GL     V E  A
Sbjct: 34  DVCIVGGGLAGLSAAIELADRGYSVIVLEAESVGWGASGRNGGQIIAGLACDQSVIE-KA 92

Query: 65  LDGLMGRVAD 74
           L     + A 
Sbjct: 93  LGLEAAQQAW 102


>gi|261856148|ref|YP_003263431.1| dihydrolipoamide dehydrogenase [Halothiobacillus neapolitanus c2]
 gi|261836617|gb|ACX96384.1| dihydrolipoamide dehydrogenase [Halothiobacillus neapolitanus c2]
          Length = 589

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHL 58
           +   DV+V+G G  G  AA  AA LG    LI  +   IG    ++ C P+   L    +
Sbjct: 120 DHQCDVVVLGAGPGGYTAAFRAADLGKKVILIE-RFEKIGGVCLNVGCIPSKALLHVSGI 178

Query: 59  VREIDALDGLMGRVAD 74
           + E   +       A+
Sbjct: 179 LNETREMGSHGITFAE 194


>gi|311745627|ref|ZP_07719412.1| dihydrolipoyl dehydrogenase [Algoriphagus sp. PR1]
 gi|126575061|gb|EAZ79411.1| dihydrolipoyl dehydrogenase [Algoriphagus sp. PR1]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVIVIG G  G  AA   A+LG  TA++
Sbjct: 2  NYDVIVIGSGPGGYVAAIRCAQLGMKTAIV 31


>gi|187926506|ref|YP_001892851.1| FAD dependent oxidoreductase [Ralstonia pickettii 12J]
 gi|241665994|ref|YP_002984353.1| FAD dependent oxidoreductase [Ralstonia pickettii 12D]
 gi|187728260|gb|ACD29424.1| FAD dependent oxidoreductase [Ralstonia pickettii 12J]
 gi|240868021|gb|ACS65681.1| FAD dependent oxidoreductase [Ralstonia pickettii 12D]
          Length = 453

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 29/167 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++ G G AG  AA    +LGA+  +I    +  G+   N                   
Sbjct: 41  DVVIAGAGFAGLSAALELTRLGANVVVIERDFAGFGASGRN-----------------AG 83

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L G +A    + FR L   K  A +  R   D   +     +E                
Sbjct: 84  YLAGAMALEYDLMFRGL--SKERATQIVRYYDDAVGFVEDKLKE----------HDIDCE 131

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
           +     I + +       IR   +V T        +   +++     
Sbjct: 132 YVQSGWIRAGVHPSQEKKIRADMLVGTEHGHKSEFLDHAQMRARGIP 178


>gi|167646146|ref|YP_001683809.1| hypothetical protein Caul_2183 [Caulobacter sp. K31]
 gi|167348576|gb|ABZ71311.1| HI0933 family protein [Caulobacter sp. K31]
          Length = 396

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 18/175 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +DV+V+G G AG   A  A K G    +         +      I G G+ +      
Sbjct: 2   EDFDVVVLGAGAAGMMCAIEAGKRGRRVLV----LDHATAPGEKIRISGGGRCNFTNVNT 57

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           A    +           R        A+           Y +A   + L Q   D    +
Sbjct: 58  APANFLSANPKFCVSALRRYRPADFIALV--------RKYGIAFHEKALGQLFCDGSAKQ 109

Query: 124 VAGFNTEKNIISSIVMQDNSMIRC------STVVLTTGTFLRGVIHIGKLKIPAG 172
           +      +   + + ++    ++               +  RG I    L +  G
Sbjct: 110 IIEMLLTEMDKAGVTLRLGVEVKGVAKDDNDQGGGYVVSTSRGPIRCASLVVATG 164


>gi|88798684|ref|ZP_01114267.1| dihydrolipoamide dehydrogenase [Reinekea sp. MED297]
 gi|88778447|gb|EAR09639.1| dihydrolipoamide dehydrogenase [Reinekea sp. MED297]
          Length = 479

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   ++V+VIG G AG  AA  AA+LG  TA+I
Sbjct: 1  MANQFEVVVIGSGPAGYVAAIKAAQLGKKTAII 33


>gi|84515734|ref|ZP_01003095.1| 2,4-dienoyl-CoA reductase [Loktanella vestfoldensis SKA53]
 gi|84510176|gb|EAQ06632.1| 2,4-dienoyl-CoA reductase [Loktanella vestfoldensis SKA53]
          Length = 674

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           + VIG G AG  AA  AA+ G    L   K+  IG
Sbjct: 377 IAVIGAGPAGLSAALTAAERGHHVTLFD-KSDRIG 410


>gi|83944232|ref|ZP_00956687.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Sulfitobacter sp. EE-36]
 gi|83844776|gb|EAP82658.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Sulfitobacter sp. EE-36]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG--LGKGHLVREI 62
           V+++GGG+ G EAA+VAAKLG    L+         + +   +  I       G  +RE 
Sbjct: 146 VLIVGGGYIGLEAASVAAKLGLQVTLVEMGDRILQRVAAPQTSDFIRALHEAHGVTIREG 205

Query: 63  DALDGLMG 70
             L+ L G
Sbjct: 206 VGLERLTG 213


>gi|167036567|ref|YP_001664145.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320114995|ref|YP_004185154.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855401|gb|ABY93809.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928086|gb|ADV78771.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 641

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V +IG G AG EAA  AA  G    +   K
Sbjct: 382 VFIIGAGLAGLEAAYTAAARGHKVYIYEEK 411


>gi|226944235|ref|YP_002799308.1| fumarate reductase/succinate dehyfrogenase, flavoprotein subunit
          [Azotobacter vinelandii DJ]
 gi|226719162|gb|ACO78333.1| fumarate reductase/succinate dehyfrogenase, flavoprotein subunit
          [Azotobacter vinelandii DJ]
          Length = 514

 Score = 40.7 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           + +YDV+V+G G AG  AA  A   GA   L+       G   C
Sbjct: 11 FDETYDVVVVGFGLAGGIAAISAHDQGARVLLLEKMPDPGGISIC 55


>gi|325280808|ref|YP_004253350.1| dihydrolipoamide dehydrogenase [Odoribacter splanchnicus DSM 20712]
 gi|324312617|gb|ADY33170.1| dihydrolipoamide dehydrogenase [Odoribacter splanchnicus DSM 20712]
          Length = 463

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 10/155 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +YD+IVIG G  G  AA   A+LG + A++                G +    L++    
Sbjct: 2   NYDLIVIGSGPGGYVAAIRGAQLGFNVAVV----ERAEQGGICLNWGCIPTKSLLKSAQV 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L     + A+A GIQ           +   R  AD+    +     +  + N+ VI G  
Sbjct: 58  L--EYAQHAEAYGIQIEHAEPDFQAIIARSRGVADKMSKGIQY---LFKKNNITVIPGH- 111

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                +K +  +    + ++     ++L TG   R
Sbjct: 112 GKLTADKKVAVTSAAGEQTIYEAKHIILATGARSR 146


>gi|304436961|ref|ZP_07396924.1| thioredoxin-disulfide reductase [Selenomonas sp. oral taxon 149
          str. 67H29BP]
 gi|304369912|gb|EFM23574.1| thioredoxin-disulfide reductase [Selenomonas sp. oral taxon 149
          str. 67H29BP]
          Length = 555

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +   YD +++GGG AG  AA   A+      +I      IG
Sbjct: 9  VENMYDAVIVGGGPAGLSAAIYLARAKCKVLVIE--KEKIG 47


>gi|296274191|ref|YP_003656822.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Arcobacter nitrofigilis DSM 7299]
 gi|296098365|gb|ADG94315.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 661

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  +Y D +VIGGG AG  AA  A K G +T +++ 
Sbjct: 1  MKINYCDALVIGGGLAGLRAAVAAQKKGLNTVVLSL 36


>gi|295695305|ref|YP_003588543.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Bacillus tusciae DSM 2912]
 gi|295410907|gb|ADG05399.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Bacillus tusciae DSM 2912]
          Length = 586

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          VIV+GGG AG   A   A+ G S  L +          C    G  G  +   E D
Sbjct: 6  VIVVGGGLAGLMTAIKVAEAGVSVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|292670645|ref|ZP_06604071.1| thioredoxin-disulfide reductase [Selenomonas noxia ATCC 43541]
 gi|292647672|gb|EFF65644.1| thioredoxin-disulfide reductase [Selenomonas noxia ATCC 43541]
          Length = 541

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          YD +++GGG AG  AA   A+      +I      IG
Sbjct: 2  YDAVIVGGGPAGLSAAIYLARAKCKVLVIE--KEKIG 36


>gi|288817545|ref|YP_003431892.1| thioredoxin reductase [Hydrogenobacter thermophilus TK-6]
 gi|288786944|dbj|BAI68691.1| thioredoxin reductase [Hydrogenobacter thermophilus TK-6]
 gi|308751148|gb|ADO44631.1| thioredoxin reductase [Hydrogenobacter thermophilus TK-6]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 41/154 (26%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I+IGGG AG  A    A+   +T L+                          E   +
Sbjct: 10  YDCIIIGGGPAGLTAGLYTARAKLNTLLL--------------------------EKGTI 43

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G +  + D       V N    P     +  + R   +            L V + E  
Sbjct: 44  GGQIA-ITDL------VENYPGFPEGISGKELSLRFKQQAERF-------GLKVAKAEAT 89

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
                   +  + ++D  M+R  T+++ +G+  R
Sbjct: 90  KIEKSGKEV-FVHLRDGRMLRAKTLIVASGSNPR 122


>gi|254786014|ref|YP_003073443.1| soluble pyridine nucleotide transhydrogenase [Teredinibacter
          turnerae T7901]
 gi|237685806|gb|ACR13070.1| soluble pyridine nucleotide transhydrogenase [Teredinibacter
          turnerae T7901]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  YD++VIG G AG  AA    K G    ++       G+ +    I      + V+
Sbjct: 1  MSDFEYDLLVIGAGPAGESAAMAGVKNGLRVGVVEAHNMLGGNCAHRGTIPSKALRNAVK 60

Query: 61 EIDAL 65
          +  A 
Sbjct: 61 QAIAY 65


>gi|237747974|ref|ZP_04578454.1| dihydrolipoamide dehydrogenase [Oxalobacter formigenes OXCC13]
 gi|229379336|gb|EEO29427.1| dihydrolipoamide dehydrogenase [Oxalobacter formigenes OXCC13]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMS--CNPAIGGLGKGHL 58
          ++  +DV VIGGG  G  AA  AA+LG  T  I   K     ++   C        K  L
Sbjct: 1  MSVDFDVAVIGGGPGGYIAAIRAAQLGMKTVCIDDWKIDGKPALGGTCTNVGCIPSKALL 60

Query: 59 VREID---ALDGLMGRVADAAGIQFRVLNV 85
                  A DGL     D  G+   +  +
Sbjct: 61 EASAHYEMARDGLSNFGVDVIGVDMDIPRM 90


>gi|206562459|ref|YP_002233222.1| putative reductase [Burkholderia cenocepacia J2315]
 gi|198038499|emb|CAR54457.1| putative reductase [Burkholderia cenocepacia J2315]
          Length = 304

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 19/134 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGK--GHL 58
           ++  ++VIVIGG  AG  AA   A+      +I   +     +   +   G  GK    +
Sbjct: 1   MHSHHEVIVIGGSFAGLSAAMQLARARRRVLVIDAGRPRNRFAEHAHGFFGQDGKPPAQI 60

Query: 59  VREIDAL----------DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ 108
           V E  A           DG        A  +F V          G R  ADR +    ++
Sbjct: 61  VAEARAQLAAYPTVQRIDGEARTAERDADGRFHVTL------GDGSRASADRLILATGIR 114

Query: 109 REILSQENLDVIQG 122
             + +   L    G
Sbjct: 115 DALPALPGLAERWG 128


>gi|149923173|ref|ZP_01911586.1| dihydrolipoamide dehydrogenase [Plesiocystis pacifica SIR-1]
 gi|149815947|gb|EDM75463.1| dihydrolipoamide dehydrogenase [Plesiocystis pacifica SIR-1]
          Length = 476

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 38/171 (22%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIG--------GL 53
           +YD+IVIG G  G  AA  AA+LG   A +    +  G+   + C P+            
Sbjct: 3   TYDLIVIGSGPGGYVAAIRAAQLGLKVACVEKDPTLGGTCLNVGCIPSKALLESSEKYAE 62

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY----RLAMQR 109
            KGHL  E     G +G            L++ K   + G + +  ++L      L  + 
Sbjct: 63  AKGHL-AEHGVTVGEVG------------LDLSK---MLGRKAKIVKQLTGGIAMLFKKN 106

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM----IRCSTVVLTTGT 156
           +I     L    GE  G   E++++  +  +D       I    V++ TG+
Sbjct: 107 KIAELHGLGRFTGEREG---ERHVVEVVADEDGKEAATRIAAKDVLIATGS 154


>gi|114769293|ref|ZP_01446919.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [alpha proteobacterium HTCC2255]
 gi|114550210|gb|EAU53091.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [alpha proteobacterium HTCC2255]
          Length = 460

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          +YDVIVIG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H   
Sbjct: 3  NYDVIVIGSGPGGYVSAIRCAQLGLKTAIVEGR-DTLGGTCLNVGCIPSKALLHASHSYH 61

Query: 61 EIDALDGLMGRVADAAGIQF 80
          E       MG + +   I F
Sbjct: 62 EATHNFDKMGLIINNPKIDF 81


>gi|78045177|ref|YP_360657.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997292|gb|ABB16191.1| anaerobic glycerol-3-phosphate dehydrogenase, B subunit
          [Carboxydothermus hydrogenoformans Z-2901]
          Length = 393

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          YD++VIG G +G  AA   A+      ++ 
Sbjct: 2  YDLVVIGAGMSGLMAAGAGARKQKKVLVVA 31


>gi|84514667|ref|ZP_01002031.1| Geranylgeranyl hydrogenase [Loktanella vestfoldensis SKA53]
 gi|84511718|gb|EAQ08171.1| Geranylgeranyl hydrogenase [Loktanella vestfoldensis SKA53]
          Length = 393

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTA 32
           YDV+V+G G +G  AA   A+ G   A
Sbjct: 2  QYDVVVVGAGPSGATAAEDLARSGHKVA 29


>gi|332795760|ref|YP_004457260.1| FAD-dependent pyridine nucleotide-disulfideoxido reductase
          [Acidianus hospitalis W1]
 gi|332693495|gb|AEE92962.1| FAD-dependent pyridine nucleotide-disulfideoxido reductase
          [Acidianus hospitalis W1]
          Length = 345

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M    YDV+++G G AG  AA   ++   ST +++   
Sbjct: 17 MQEEIYDVVIVGAGIAGLSAALYTSRQRMSTLVVSKDL 54


>gi|329898674|ref|ZP_08272436.1| FAD dependent oxidoreductase [gamma proteobacterium IMCC3088]
 gi|328920775|gb|EGG28230.1| FAD dependent oxidoreductase [gamma proteobacterium IMCC3088]
          Length = 490

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           DV+V+G G AG   A    +LG ST ++       G+   N
Sbjct: 90  DVVVVGAGLAGSSLALHLTELGLSTVVLEMHQPGWGASGRN 130


>gi|325293046|ref|YP_004278910.1| NAD / NADP transhydrogenase [Agrobacterium sp. H13-3]
 gi|325060899|gb|ADY64590.1| NAD / NADP transhydrogenase [Agrobacterium sp. H13-3]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +D+IVIG G AG  AA  AAKL     +I
Sbjct: 3  QFDLIVIGSGPAGRRAAIQAAKLEKRVLVI 32


>gi|299134193|ref|ZP_07027386.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Afipia sp. 1NLS2]
 gi|298590940|gb|EFI51142.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Afipia sp. 1NLS2]
          Length = 511

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
          SYD+I++G G  G  + A+ A+ G    +I            + ++GG    + V ++  
Sbjct: 2  SYDIIIVGAGLGGLTSGALLARAGRKVLVIE----------KSNSVGGAASSYKVGDLFV 51

Query: 65 LDGLM 69
             L 
Sbjct: 52 EGSLH 56


>gi|256112252|ref|ZP_05453173.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265993681|ref|ZP_06106238.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764662|gb|EEZ10583.1| dihydrolipoamide dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDV+VIG G  G  AA  AA+LG   A++  K  T G    ++ C P+   L    +  
Sbjct: 2   SYDVVVIGTGPGGYVAAIKAAQLGLKVAVVE-KRKTFGGTCLNIGCIPSKALLHASEVFA 60

Query: 61  EIDALDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           E        G   D  G++    LN+ K  A +    +A      ++    +  +  +  
Sbjct: 61  EA-------GHSFDTFGVEVTPKLNLTKMLAHKDTTVKA-----NVSGVEFLFKKNKITP 108

Query: 120 IQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
             G   G    K  +S +  +D     I    +++ TG+ + G+
Sbjct: 109 YIG--TGKIVGKGKVS-VTSEDGKVEEIEAKNIIIATGSDVAGI 149


>gi|224824417|ref|ZP_03697525.1| NADH:flavin oxidoreductase/NADH oxidase [Lutiella nitroferrum 2002]
 gi|224603836|gb|EEG10011.1| NADH:flavin oxidoreductase/NADH oxidase [Lutiella nitroferrum 2002]
          Length = 686

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+V+G G AG EAA VA + G    L    
Sbjct: 391 VVVVGAGPAGLEAARVARERGHDVVLFEKN 420


>gi|224059610|ref|XP_002299932.1| predicted protein [Populus trichocarpa]
 gi|222847190|gb|EEE84737.1| predicted protein [Populus trichocarpa]
          Length = 493

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------------- 54
           VI+IG G +G  A  V A+ G    +I   +  IG        GG+              
Sbjct: 9   VIIIGAGISGVSAGKVLAENGIEDMVILEASDRIGGRIRKDNFGGVSVELGAGWIAGVGG 68

Query: 55  -KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
            + + V E+ +  GL    +D +  ++ + +        G       + Y+ A+   I +
Sbjct: 69  KESNPVWELASQSGLRTCFSDYSNARYNIYDRSGKIYPSGVAA----DSYKKAVDLAIEN 124

Query: 114 QENLD 118
            ++L+
Sbjct: 125 LKSLE 129


>gi|159044360|ref|YP_001533154.1| dihydrolipoamide dehydrogenase [Dinoroseobacter shibae DFL 12]
 gi|157912120|gb|ABV93553.1| dihydrolipoyl dehydrogenase [Dinoroseobacter shibae DFL 12]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M   S+D++V+G G  G  AA  AA+LG   A++       I    G +     +     
Sbjct: 1   MAETSFDMVVVGAGPGGYVAAIRAAQLGLKVAIVEREHMGGICLNWGCIPTKAMLRSSEV 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+             AD  G                 R++A  +     +   +   +
Sbjct: 61  FHLMHRAKEFG----LKADGVGYDLD---------AVVARSRAIAKQLNSGVSHLMKKNK 107

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV 161
            + V+ GE      +     ++     +  +R   VVL TG   R +
Sbjct: 108 -VTVVMGEA-SLPAKG--TVAVKTDKGTETLRAPHVVLATGARAREL 150


>gi|221066137|ref|ZP_03542242.1| HI0933 family protein [Comamonas testosteroni KF-1]
 gi|220711160|gb|EED66528.1| HI0933 family protein [Comamonas testosteroni KF-1]
          Length = 430

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          DV V+G G AG   A   AK G S  +         S +    + G G  +L   
Sbjct: 16 DVAVVGAGPAGLMVAEQLAKAGLSVRVF----EAKASAARKFLMAGKGGLNLTHS 66


>gi|52426345|ref|YP_089482.1| DadA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308397|gb|AAU38897.1| DadA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 431

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +S DV V+G G  G  AA   A+ G S  ++       G+   N   GG         +D
Sbjct: 31 QSADVCVVGAGFGGLSAALELAERGKSVIVLEGARIGFGASGRN---GGQAINGFEDGMD 87

Query: 64 ALDGLMGR 71
          A    MG 
Sbjct: 88 AYIDDMGL 95


>gi|15966714|ref|NP_387067.1| putative oxidoreductase protein [Sinorhizobium meliloti 1021]
 gi|307300251|ref|ZP_07580031.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
 gi|307321128|ref|ZP_07600532.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|15075986|emb|CAC47540.1| Oxidoreductase [Sinorhizobium meliloti 1021]
 gi|306893203|gb|EFN23985.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|306904417|gb|EFN35001.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
          Length = 426

 Score = 40.7 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          D ++IGGG AG   A   A+ G S  ++  ++   G+   N      G
Sbjct: 28 DTVIIGGGLAGLTTALQLARAGQSVVVLEAESVGFGASGRNGGFVSPG 75


>gi|322389581|ref|ZP_08063130.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           parasanguinis ATCC 903]
 gi|321143707|gb|EFX39136.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           parasanguinis ATCC 903]
          Length = 571

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  +A  AA+LG   AL+
Sbjct: 110 DDAYDIVVIGGGPAGYVSAIKAAQLGGKVALV 141


>gi|300855456|ref|YP_003780440.1| succinate dehydrogenase flavoprotein subunit [Clostridium
          ljungdahlii DSM 13528]
 gi|300435571|gb|ADK15338.1| succinate dehydrogenase flavoprotein subunit [Clostridium
          ljungdahlii DSM 13528]
          Length = 598

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTAL 33
          D++V+GG  AG  AA  AA+ GA   L
Sbjct: 10 DILVVGGSGAGSMAAVTAARKGAKVLL 36


>gi|239983122|ref|ZP_04705646.1| dihydrolipoamide dehydrogenase [Streptomyces albus J1074]
 gi|291454954|ref|ZP_06594344.1| dihydrolipoamide dehydrogenase [Streptomyces albus J1074]
 gi|291357903|gb|EFE84805.1| dihydrolipoamide dehydrogenase [Streptomyces albus J1074]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          ++  +DV+V+G G  G  AA  AA+LG   A+I  K        +G +     +      
Sbjct: 1  MSTHFDVVVLGAGPGGYVAAIRAAQLGLKVAVIEEKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLV-REIDALD 66
          HLV  E     
Sbjct: 61 HLVNNEAKTFG 71


>gi|271965612|ref|YP_003339808.1| tryptophan halogenase [Streptosporangium roseum DSM 43021]
 gi|270508787|gb|ACZ87065.1| putative tryptophan halogenase [Streptosporangium roseum DSM 43021]
          Length = 470

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 21/174 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +  S  +++IGGG AG  AA + A+ G    L+              +I       +   
Sbjct: 1   MRESTQILIIGGGPAGSTAAGLLAREGFQVTLLE--RDRFPRYHIGESIL-PSCRPIFEL 57

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-VI 120
           +   D       +A G Q       KG A      Q   E + +          N   VI
Sbjct: 58  LGVWD-----KVEAHGFQ------PKGGAF----FQWGPEEWEVRFSNLGDDTPNAWQVI 102

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRM 174
           + E      +      + + +   +R   +       +    +  K    +GR+
Sbjct: 103 RSEFDQLLLDHARELGVEVIEGVSVR--DIEFDGDRAVAARWYDTKDPERSGRI 154


>gi|227549952|ref|ZP_03980001.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077968|gb|EEI15931.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 468

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLGKGHLV 59
           +++IGGG AG EAA   +K GA   LI              +      P+ G +   ++ 
Sbjct: 5   IVIIGGGPAGYEAALAGSKYGADITLIENRGIGGSAINLDVV------PSKGFIAASNIK 58

Query: 60  REIDALD------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
            ++   D      GL         +  RV+ +    A R  RTQ +R
Sbjct: 59  TDLRRADDMGLNHGLGEASLMITALNNRVVALASEQA-RDVRTQLER 104


>gi|254481401|ref|ZP_05094646.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038564|gb|EEB79226.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 511

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +YD+ +IG GH G   AA  AK G    ++   
Sbjct: 3  NYDIAIIGAGHNGLACAAYLAKAGRKVLVLEAN 35


>gi|239616553|ref|YP_002939875.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
 gi|239505384|gb|ACR78871.1| FAD dependent oxidoreductase [Kosmotoga olearia TBF 19.5.1]
          Length = 377

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  +VI+IG G AG  AA V A+      LI
Sbjct: 1  MEKKAEVIIIGAGPAGSTAATVLARRNFDILLI 33


>gi|254439362|ref|ZP_05052856.1| dihydrolipoamide dehydrogenase [Octadecabacter antarcticus 307]
 gi|198254808|gb|EDY79122.1| dihydrolipoamide dehydrogenase [Octadecabacter antarcticus 307]
          Length = 462

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G   A   A+LG  TA++  +  T+G    ++ C P+   L   H+  
Sbjct: 3  SYDVIIIGSGPGGYVCAIRCAQLGLKTAVVEGR-ETLGGTCLNIGCIPSKALLHASHMRH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAAMGLKGK 75


>gi|307150626|ref|YP_003886010.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
 gi|306980854|gb|ADN12735.1| FAD dependent oxidoreductase [Cyanothece sp. PCC 7822]
          Length = 563

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +SYDVI+IG GH G   AA   K G S  L+
Sbjct: 2  QSYDVIIIGAGHNGLVCAAYLLKAGYSVLLL 32


>gi|171059385|ref|YP_001791734.1| succinate dehydrogenase, flavoprotein subunit [Leptothrix
          cholodnii SP-6]
 gi|170776830|gb|ACB34969.1| succinate dehydrogenase, flavoprotein subunit [Leptothrix
          cholodnii SP-6]
          Length = 602

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   A+ G + A+++
Sbjct: 10 RKFDVVIVGAGGSGMRASLQLAQAGLNVAVLS 41


>gi|167563677|ref|ZP_02356593.1| probable alkylhalidase pltM [Burkholderia oklahomensis EO147]
          Length = 569

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDV +IG G AG   AA+ AK GAS  L+
Sbjct: 1  MKRDYDVAIIGSGIAGAMLAAILAKHGASVILL 33


>gi|123965475|ref|YP_001010556.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123199841|gb|ABM71449.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 318

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 42/165 (25%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV ++GGG AGC  A   ++    T +          +  NP++G L   H         
Sbjct: 7   DVAIVGGGPAGCTCALYTSRSNLKTVI----------IDKNPSVGALAITH--------- 47

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
                         ++ N    P               L + RE   Q   D  + +V G
Sbjct: 48  --------------QIANYPGVPVDISG-------EKLLTLMREQAVQYGTDYRRAQVFG 86

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +  K+   ++   +    +   +VL +G   R     G+     
Sbjct: 87  IDVGKDW-KTVYTPEG-TFKAKALVLASGAMGRPASFKGEADFLG 129


>gi|169847377|ref|XP_001830400.1| fumarate reductase [Coprinopsis cinerea okayama7#130]
 gi|116508652|gb|EAU91547.1| fumarate reductase [Coprinopsis cinerea okayama7#130]
          Length = 584

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          VIV+GGG AG  AA    + GAS  L+
Sbjct: 4  VIVVGGGLAGLSAAHTLLERGASVLLL 30


>gi|118360020|ref|XP_001013248.1| amine oxidase, flavin-containing family protein [Tetrahymena
          thermophila]
 gi|89295015|gb|EAR93003.1| amine oxidase, flavin-containing family protein [Tetrahymena
          thermophila SB210]
          Length = 452

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DVIVIG G +G  AA    + G + A++  K++  G +S N             EI   +
Sbjct: 7  DVIVIGAGISGLSAAHALVQKGLNVAILEAKSTFGGRISKNSQFADFPIETGAEEIHLKE 66

Query: 67 GLMGRVADAAGI 78
              ++A++ G 
Sbjct: 67 SAYFQLAESVGA 78


>gi|148223277|ref|NP_001088354.1| monoamine oxidase A [Xenopus laevis]
 gi|54038132|gb|AAH84428.1| LOC495197 protein [Xenopus laevis]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDVIVIGGG +G  AA + ++ G S  ++
Sbjct: 1  MSNTYDVIVIGGGISGLSAAKLLSESGISVVVL 33


>gi|148260619|ref|YP_001234746.1| dihydrolipoamide dehydrogenase [Acidiphilium cryptum JF-5]
 gi|326403813|ref|YP_004283895.1| dihydrolipoyl dehydrogenase [Acidiphilium multivorum AIU301]
 gi|146402300|gb|ABQ30827.1| dihydrolipoamide dehydrogenase [Acidiphilium cryptum JF-5]
 gi|325050675|dbj|BAJ81013.1| dihydrolipoyl dehydrogenase [Acidiphilium multivorum AIU301]
          Length = 463

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVIVIG G  G   A  AA+LG   A +
Sbjct: 1  MADQFDVIVIGAGPGGYVCAIRAAQLGMKVACV 33


>gi|121583135|ref|YP_973576.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Polaromonas naphthalenivorans CJ2]
 gi|120596397|gb|ABM39834.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Polaromonas naphthalenivorans CJ2]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 43/150 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVIV+G G AG  AA V  +   S  +             + A       H +    + 
Sbjct: 11  WDVIVVGAGPAGLNAALVLGRCRRSVLVF------------DDAKPRNAVSHAMHGFLSR 58

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DG+                     A    R+ A         + ++ +  ++ +    V 
Sbjct: 59  DGI---------------------APEQLRSIA---------REQMAAYPSVSIEDVRVI 88

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                    + +   D    +   ++L TG
Sbjct: 89  DAIRTDAGFT-VTTSDGRTFQARKLLLATG 117


>gi|83953273|ref|ZP_00961995.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83842241|gb|EAP81409.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Sulfitobacter sp. NAS-14.1]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGG--LGKGHLVREI 62
           V+++GGG+ G EAA+VAAKLG    L+         + +   +          G  +RE 
Sbjct: 146 VLIVGGGYIGLEAASVAAKLGLQVTLVEMGDRILQRVAAPQTSDFFRALHEAHGVTIREG 205

Query: 63  DALDGLMG 70
             L+ L G
Sbjct: 206 VGLERLTG 213


>gi|319897871|ref|YP_004136068.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor
           subunit [Haemophilus influenzae F3031]
 gi|317433377|emb|CBY81757.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor
           subunit [Haemophilus influenzae F3031]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQRRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ +LD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELHLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|310819972|ref|YP_003952330.1| phytoene dehydrogenase [Stigmatella aurantiaca DW4/3-1]
 gi|309393044|gb|ADO70503.1| Phytoene dehydrogenase [Stigmatella aurantiaca DW4/3-1]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          DVI++G GH G   AA+ A+ G    ++     T+G
Sbjct: 3  DVIIVGAGHNGLVTAALLARRGLKVTVLE-DKDTVG 37


>gi|300717409|ref|YP_003742212.1| FAD dependent D-amino acid oxidase [Erwinia billingiae Eb661]
 gi|299063245|emb|CAX60365.1| FAD dependent D-amino acid oxidase [Erwinia billingiae Eb661]
          Length = 425

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G +  ++
Sbjct: 27 DVVVIGGGFTGISAALNLARSGVNVVVL 54


>gi|300024729|ref|YP_003757340.1| dihydrolipoamide dehydrogenase [Hyphomicrobium denitrificans ATCC
          51888]
 gi|299526550|gb|ADJ25019.1| dihydrolipoamide dehydrogenase [Hyphomicrobium denitrificans ATCC
          51888]
          Length = 470

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPAIGGLGKGHL 58
          +  SYD+IVIG G  G   A  AA+LG   A++        T  ++ C P+   L   H 
Sbjct: 1  MTASYDLIVIGTGPGGYVCAIRAAQLGLKVAVVEKRGTHGGTCLNVGCIPSKALLHASHA 60

Query: 59 VREIDALDGLMGRVA 73
            E     G MG  A
Sbjct: 61 YDEAKHAFGAMGIDA 75


>gi|254712544|ref|ZP_05174355.1| FAD dependent oxidoreductase [Brucella ceti M644/93/1]
 gi|254715616|ref|ZP_05177427.1| FAD dependent oxidoreductase [Brucella ceti M13/05/1]
 gi|261217365|ref|ZP_05931646.1| FAD dependent oxidoreductase [Brucella ceti M13/05/1]
 gi|261320238|ref|ZP_05959435.1| FAD dependent oxidoreductase [Brucella ceti M644/93/1]
 gi|260922454|gb|EEX89022.1| FAD dependent oxidoreductase [Brucella ceti M13/05/1]
 gi|261292928|gb|EEX96424.1| FAD dependent oxidoreductase [Brucella ceti M644/93/1]
          Length = 428

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  DV+VIGGG+AG  AA   AK G    LI
Sbjct: 30 SQQADVVVIGGGYAGLSAAYHLAKQGTDVVLI 61


>gi|237746539|ref|ZP_04577019.1| dihydrolipoamide dehydrogenase [Oxalobacter formigenes HOxBLS]
 gi|229377890|gb|EEO27981.1| dihydrolipoamide dehydrogenase [Oxalobacter formigenes HOxBLS]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 15/104 (14%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGGL----GKG 56
           ++  +DV VIGGG  G  AA  AA+LG  T  I   KT         PA GG     G  
Sbjct: 1   MSVDFDVAVIGGGPGGYIAAIRAAQLGMKTVCIDDWKTDG------KPAPGGTCTNVGCI 54

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
                ++A       +A      F V    KG  +   R QA R
Sbjct: 55  PSKALLEA--SSHYELAKEGFAHFGVG--IKGVELDVSRMQARR 94


>gi|229085326|ref|ZP_04217568.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-44]
 gi|228698045|gb|EEL50788.1| phytoene dehydrogenase enzyme [Bacillus cereus Rock3-44]
          Length = 437

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++DV +IGGG AG  A+   AK G    ++
Sbjct: 12 KTFDVAIIGGGLAGLTASIYLAKEGKKVVVL 42


>gi|256830962|ref|YP_003159690.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfomicrobium baculatum DSM 4028]
 gi|256580138|gb|ACU91274.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfomicrobium baculatum DSM 4028]
          Length = 413

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG------- 51
          ++VIGGG AG  AA  AA++G    +I           + +      C P+ G       
Sbjct: 6  ILVIGGGFAGITAALEAAEIGHEVFIIEKTPFLGGRVMQLNKYFPKLCPPSCGLEIQYQR 65

Query: 52 ----GLGKGHLVREIDALDGLMG 70
                 K   + E+  +DG +G
Sbjct: 66 IKNNPNVKFFTLAEVTKVDGSVG 88


>gi|224042613|ref|XP_002191280.1| PREDICTED: monoamine oxidase A [Taeniopygia guttata]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL-----------ITHKTSTIGSMSCNPAI 50
          + + YDV+VIG G +G  AA + ++ G S  +            T +   +  +    + 
Sbjct: 1  MAQRYDVVVIGAGISGLSAAKLLSEAGVSVVVLEARDRVGGRTFTIRNDKVNYVDVGGSY 60

Query: 51 GGLGKGHLVREIDALD 66
           G  +  ++R    L 
Sbjct: 61 VGPTQNRILRLAKELG 76


>gi|254449480|ref|ZP_05062917.1| NADH:flavin oxidoreductase/nadh oxidase family protein
           [Octadecabacter antarcticus 238]
 gi|198263886|gb|EDY88156.1| NADH:flavin oxidoreductase/nadh oxidase family protein
           [Octadecabacter antarcticus 238]
          Length = 710

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V++IG G AG EAA VAA+ G +  + 
Sbjct: 418 VVIIGAGPAGLEAARVAAERGHAVTVF 444


>gi|217980007|ref|YP_002364154.1| HI0933 family protein [Methylocella silvestris BL2]
 gi|217505383|gb|ACK52792.1| HI0933 family protein [Methylocella silvestris BL2]
          Length = 428

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID--AL 65
          VI+IG G AG  AA   A  G   ++       + +      + G G  +L    D   L
Sbjct: 9  VIIIGAGPAGLMAAETVASKGVRVSIY----DRMAAPGRKFLLAGRGGLNLTHSEDFEIL 64

Query: 66 DGLMGRVADAAGIQFRVLNVKKGPA 90
              G  +D       V + K   A
Sbjct: 65 LSRYGAASDRLREALEVFSPKALRA 89


>gi|111225454|ref|YP_716248.1| putative xanthan lyase [Frankia alni ACN14a]
 gi|111152986|emb|CAJ64734.1| Hypothetical protein; putative xanthan lyase [Frankia alni ACN14a]
          Length = 554

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V G   AG  AA  A ++G  T L+               IGG+  G L        
Sbjct: 64  DLCVYGATPAGIAAAVQARRMGLRTTLLAFD----------DEIGGMMSGGLSATDTGYT 113

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             +G  A              GP V        R+++   +++  +      + +  +A 
Sbjct: 114 STIGGFAREIFAAIGEHYRSTGP-VYNFEPHVARDVFVAVLKKAGVRV----LTRQRLAE 168

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR 173
                N I  I        R +  V    ++   ++   ++    GR
Sbjct: 169 VVLSGNRIRWINTDGGGTHRANAFVDA--SYEGDLLAAARVAFVTGR 213


>gi|291231309|ref|XP_002735607.1| PREDICTED: glycerol-3-phosphate dehydrogenase 2,
          mitochondrial-like, partial [Saccoglossus kowalevskii]
          Length = 166

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +    +DV+VIGGG  GC  A  AA  G  TAL+
Sbjct: 66 LKETEFDVLVIGGGATGCGVALDAASRGLKTALV 99


>gi|257435434|ref|ZP_05611485.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|282913238|ref|ZP_06321030.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus M899]
 gi|257286030|gb|EEV16146.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|282323338|gb|EFB53657.1| alkyl hydroperoxide reductase, subunit F [Staphylococcus aureus
           subsp. aureus M899]
          Length = 507

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
              YDV+++GGG A   AA   A+ G  T ++      +G         G+     V+E 
Sbjct: 203 KEPYDVLIVGGGPASGSAAIYTARKGLRTGIVA---DRMGGQV--NDTAGIENFITVKE- 256

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                       A   Q+ +       A+ G R   D E    A++  + +
Sbjct: 257 -TTGSEFSSNLAAHIDQYDID------AMTGIRA-TDIEKTDEAIKVTLEN 299


>gi|170696874|ref|ZP_02887970.1| monooxygenase FAD-binding [Burkholderia ambifaria IOP40-10]
 gi|170138048|gb|EDT06280.1| monooxygenase FAD-binding [Burkholderia ambifaria IOP40-10]
          Length = 394

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          Y V VIGGG AG   A   A+ G +  L+ 
Sbjct: 25 YRVAVIGGGPAGSSCALALARAGITDVLVV 54


>gi|167840398|ref|ZP_02467082.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          thailandensis MSMB43]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLSRAGLSVCVLS 42


>gi|84489673|ref|YP_447905.1| dehydrogenase [Methanosphaera stadtmanae DSM 3091]
 gi|121696530|sp|Q2NFZ1|GGR1_METST RecName: Full=Digeranylgeranylglycerophospholipid reductase 1;
          Short=DGGGPL reductase 1; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase 1; AltName: Full=Geranylgeranyl reductase 1;
          Short=GGR 1
 gi|84372992|gb|ABC57262.1| predicted dehydrogenase [Methanosphaera stadtmanae DSM 3091]
          Length = 403

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          DV+VIG G AG  AA  AA  GA+  LI  K+       C
Sbjct: 5  DVVVIGAGPAGSMAAKHAALGGANVVLIDKKSEIGTPKRC 44


>gi|134297179|ref|YP_001120914.1| FAD dependent oxidoreductase [Burkholderia vietnamiensis G4]
 gi|134140336|gb|ABO56079.1| gamma-glutamylputrescine oxidase [Burkholderia vietnamiensis G4]
          Length = 433

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S  ++        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALNLAERGHSVTVLEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLM 69
            M
Sbjct: 91 NFM 93


>gi|325303272|tpg|DAA34772.1| TPA_inf: dihydrolipoamide dehydrogenase [Amblyomma variegatum]
          Length = 243

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
              D++VIGGG  G  AA  AA+LG  T  I     T+G    ++ C P+   L   HL 
Sbjct: 44  EEQDLVVIGGGPGGYVAAIKAAQLGLKTTCIEKN-DTLGGTCLNVGCIPSKALLHNSHLY 102

Query: 60  REIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGP 94
               + D    G   D   +  + L  +K  AV+  
Sbjct: 103 HLAHSNDFKNRGIEVDNVRLNLQKLMEQKSSAVKAL 138


>gi|317484044|ref|ZP_07942977.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
 gi|316924688|gb|EFV45841.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
          Length = 690

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
            +   V+VIGGG AG E A VAA  G    L          +     +  + KG  V ++
Sbjct: 403 EKKKKVVVIGGGPAGMETARVAALRGHDVTLF----EKSSRLGGKLPLAAMIKGVEVEDV 458

Query: 63  DAL 65
             +
Sbjct: 459 RPV 461


>gi|307944287|ref|ZP_07659628.1| sarcosine oxidase [Roseibium sp. TrichSKD4]
 gi|307772633|gb|EFO31853.1| sarcosine oxidase [Roseibium sp. TrichSKD4]
          Length = 365

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          VIV+G G +G  AA    K G    LI       G +    +  G     + R      G
Sbjct: 3  VIVVGAGVSGFSAAWALVKKGVEVTLIEQ-----GPIPNPLSASGDQHRIIRRAYGGQGG 57

Query: 68 LMGRVADAAGI 78
             R+ DA   
Sbjct: 58 YQRRIGDAYAA 68


>gi|304397915|ref|ZP_07379791.1| HI0933 family protein [Pantoea sp. aB]
 gi|304354626|gb|EFM18997.1| HI0933 family protein [Pantoea sp. aB]
          Length = 394

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVI+IG G AG   AA A + G S  L+
Sbjct: 2  EQFDVIIIGAGAAGLFCAAQAGQRGLSVLLL 32


>gi|284042236|ref|YP_003392576.1| dihydrolipoamide dehydrogenase [Conexibacter woesei DSM 14684]
 gi|283946457|gb|ADB49201.1| dihydrolipoamide dehydrogenase [Conexibacter woesei DSM 14684]
          Length = 457

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M + +YD IVIG G  G  AA  AA+LG  TA++      IG
Sbjct: 1  MPDSAYDCIVIGSGPGGYVAAIRAAQLGLRTAVVE--KDQIG 40


>gi|296083791|emb|CBI24008.3| unnamed protein product [Vitis vinifera]
          Length = 259

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + +DVIVIGGG  G   A   AK G +T L+  
Sbjct: 6  QKFDVIVIGGGVMGSSTAYHVAKRGYTTLLLEQ 38


>gi|225464346|ref|XP_002272090.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 431

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + +DVIVIGGG  G   A   AK G +T L+  
Sbjct: 6  QKFDVIVIGGGVMGSSTAYHVAKRGYTTLLLEQ 38


>gi|189468391|ref|ZP_03017176.1| hypothetical protein BACINT_04788 [Bacteroides intestinalis DSM
           17393]
 gi|189436655|gb|EDV05640.1| hypothetical protein BACINT_04788 [Bacteroides intestinalis DSM
           17393]
          Length = 541

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 54/178 (30%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPIIVERGKNVRDRKKDLAQISREHTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  N  +        +  +     E++ I  I       I    V+L TG   R V 
Sbjct: 198 ENMRNTILECGGEVHFETRMDALIIEEDEIKGIETHTGQTILGP-VILATGHSARDVY 254


>gi|167574445|ref|ZP_02367319.1| probable alkylhalidase pltM [Burkholderia oklahomensis C6786]
          Length = 569

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDV +IG G AG   AA+ AK GAS  L+
Sbjct: 1  MKRDYDVAIIGSGIAGAMLAAILAKHGASVILL 33


>gi|58269228|ref|XP_571770.1| kynurenine 3-monooxygenase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57228006|gb|AAW44463.1| kynurenine 3-monooxygenase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 421

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 23/234 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++GGG AG   A   +K G  + +   ++   G +     +        +R +D L G
Sbjct: 12  VLILGGGLAGTCFALALSKSGIRSTIFELRSDP-GDIGGALMLAPNA----LRVLDKLVG 66

Query: 68  LMGRVADAAGIQFRVLN-VKKGPAVRGPRTQADRELY---RLAMQREILSQENLDVIQGE 123
           +   + D  G  F  LN   +     G   Q D+E +    L ++R IL ++ L+     
Sbjct: 67  VYEEIKD-NGFSFEKLNFYSEDGMKLGGFAQGDQERWGYKALRIKRPILHKKLLEACAAS 125

Query: 124 VAGFNTEKNIISSIVM--QDNSMIRCSTVVLTTGTFLRGV--IHIGKLKIPAGRMGDSPS 179
               + +  +I   +   +   MI       T+G  L G   IH          + D P+
Sbjct: 126 -DKIDFKYGMIWKSIDESETGVMIHFEDGTRTSGDILVGCDGIHSRLRNYL---LPDPPT 181

Query: 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI 233
            +          +  R     P  +     I+ +         L+P  F  + I
Sbjct: 182 PTYAG-LAGIGGEVSRSSLDIPPYMTLPAFIYTR----PGMVMLVPCDFSGESI 230


>gi|83590886|ref|YP_430895.1| NADH:flavin oxidoreductase/NADH oxidase [Moorella thermoacetica
           ATCC 39073]
 gi|83573800|gb|ABC20352.1| NADH:flavin oxidoreductase/NADH oxidase [Moorella thermoacetica
           ATCC 39073]
          Length = 668

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           V++IGGG AGCE A   A+ G    +I      +
Sbjct: 530 VVIIGGGLAGCETALWLAQQGKDVTIIEILDDLM 563



 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+VIGGG AG EAA VAA  G   +L   K+  +G
Sbjct: 407 VMVIGGGVAGMEAARVAALRGHRVSLYE-KSDRLG 440


>gi|89893690|ref|YP_517177.1| hypothetical protein DSY0944 [Desulfitobacterium hafniense Y51]
 gi|89333138|dbj|BAE82733.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 430

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D +++GGG AG  A  + AK G   A++                GG    H + 
Sbjct: 1  MSEDQFDAVIVGGGIAGTVAGYLLAKEGLQVAVV----ERGNYAGSKNVTGGRIYSHSLE 56

Query: 61 EI 62
          +I
Sbjct: 57 KI 58


>gi|46447476|ref|YP_008841.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Protochlamydia amoebophila UWE25]
 gi|46401117|emb|CAF24566.1| probable succinate dehydrogenase flavoprotein [Candidatus
          Protochlamydia amoebophila UWE25]
          Length = 627

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++++ +VIV+GGG +G   A   A+ G +  +++          C    G     +L  E
Sbjct: 1  MSKAKEVIVVGGGLSGLSTAMKLAENGCNVKIVSVTKVKRSHSVCAQG-GINAAMNLKGE 59

Query: 62 ID 63
           D
Sbjct: 60 DD 61


>gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1]
 gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1]
          Length = 793

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V++IGGG AG EAA   A+ G    ++
Sbjct: 142 NVLIIGGGVAGIEAALNLAEAGFPVTMV 169


>gi|86140143|ref|ZP_01058705.1| N-methylproline demethylase, putative [Roseobacter sp. MED193]
 gi|85823080|gb|EAQ43293.1| N-methylproline demethylase, putative [Roseobacter sp. MED193]
          Length = 681

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+VIG G  G EAA VAA+ G +  +   +  
Sbjct: 389 VVVIGAGPGGLEAARVAAERGHAVTVFEAQPD 420


>gi|85709018|ref|ZP_01040084.1| dihydrolipoamide dehydrogenase [Erythrobacter sp. NAP1]
 gi|85690552|gb|EAQ30555.1| dihydrolipoamide dehydrogenase [Erythrobacter sp. NAP1]
          Length = 472

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YD +VIG G  G  AA  AA+LG  TA I     T+G    ++ C P+   L    L  
Sbjct: 7  DYDCLVIGAGPGGYVAAIRAAQLGLKTACIE-SRETLGGTCLNVGCIPSKALLHASELFE 65

Query: 61 EIDALDG 67
          E  A  G
Sbjct: 66 E--AEGG 70


>gi|330833749|ref|YP_004402574.1| flavocytochrome c [Streptococcus suis ST3]
 gi|329307972|gb|AEB82388.1| flavocytochrome c [Streptococcus suis ST3]
          Length = 505

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +  SYDVIV+G G AG  AA  A   GAS AL       +  +  N A    G
Sbjct: 59  LKDSYDVIVVGSGGAGMSAAISAKDAGASVAL----LEKMPVIGGNTAKSSAG 107


>gi|327394373|dbj|BAK11795.1| gamma-glutamylputrescine oxidoreductase PuuB [Pantoea ananatis
          AJ13355]
          Length = 454

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIG G  G  AA   A+ G +  ++
Sbjct: 56 DVVVIGAGFTGVSAALTLARSGINVVVL 83


>gi|325125540|gb|ADY84870.1| Fumarate reductase flavoprotein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++N SYD++VIG G  G  AA  A +LGAS A+    
Sbjct: 13 LVNPSYDLVVIGAGGTGLSAALQAHELGASVAVFEKN 49


>gi|303326849|ref|ZP_07357291.1| protein CbrA [Desulfovibrio sp. 3_1_syn3]
 gi|302862837|gb|EFL85769.1| protein CbrA [Desulfovibrio sp. 3_1_syn3]
          Length = 367

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 33/201 (16%)

Query: 4   RSYDVIVIGGGHAG-CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             +D+I++G G AG C A   A   G   AL+        + + + A  G G+      I
Sbjct: 2   EDFDIIIVGAGPAGSCLARLAAGLPGLRIALL-------DARALDSAYTGTGR------I 48

Query: 63  DALDGLMGRVADAAGIQF------RVLNVKKGPAVRGPRTQAD-----RELY----RLAM 107
            +  GLM   A  A  +       R+L   +  AVR     +      +  Y    R A 
Sbjct: 49  KSCGGLMAPAAQKALARMDMALPSRLLVTPQLFAVRTLDLPSGLERNYQRFYLNLDREAF 108

Query: 108 QREILSQENLDVIQG---EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
            R + +     V +     V   + E++    ++ +D + + C  +V   G        +
Sbjct: 109 DRWLFASVGDSVRKFSSVMVKKLHRERDG-YGVLCEDGTHLCCRFIVGADGANSVVRRKL 167

Query: 165 GKLKIPAGRMGDSPSNSLFNS 185
                P   +      +L + 
Sbjct: 168 FPQLRPTCYISIQERFALESR 188


>gi|291617966|ref|YP_003520708.1| PuuB [Pantoea ananatis LMG 20103]
 gi|291152996|gb|ADD77580.1| PuuB [Pantoea ananatis LMG 20103]
          Length = 439

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIG G  G  AA   A+ G +  ++
Sbjct: 41 DVVVIGAGFTGVSAALTLARSGINVVVL 68


>gi|253752786|ref|YP_003025927.1| fumarate reductase flavoprotein subunit [Streptococcus suis SC84]
 gi|253754611|ref|YP_003027752.1| fumarate reductase flavoprotein subunit [Streptococcus suis P1/7]
 gi|253756544|ref|YP_003029684.1| fumarate reductase flavoprotein subunit [Streptococcus suis BM407]
 gi|251817075|emb|CAZ52727.1| putative fumarate reductase flavoprotein subunit [Streptococcus
           suis SC84]
 gi|251819008|emb|CAZ56855.1| putative fumarate reductase flavoprotein subunit [Streptococcus
           suis BM407]
 gi|251820857|emb|CAR47623.1| putative fumarate reductase flavoprotein subunit [Streptococcus
           suis P1/7]
 gi|319759204|gb|ADV71146.1| fumarate reductase flavoprotein subunit [Streptococcus suis JS14]
          Length = 505

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +  SYDVIV+G G AG  AA  A   GAS AL       +  +  N A    G
Sbjct: 59  LKDSYDVIVVGSGGAGMSAAISAKDAGASVAL----LEKMPVIGGNTAKSSAG 107


>gi|239636623|ref|ZP_04677625.1| thioredoxin-disulfide reductase [Staphylococcus warneri L37603]
 gi|239597978|gb|EEQ80473.1| thioredoxin-disulfide reductase [Staphylococcus warneri L37603]
 gi|330684871|gb|EGG96556.1| thioredoxin-disulfide reductase [Staphylococcus epidermidis
          VCU121]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++   +T +I
Sbjct: 1  MTEVDFDVAIIGAGPAGMTAAVYASRANLNTVMI 34


>gi|223932856|ref|ZP_03624852.1| flavocytochrome c [Streptococcus suis 89/1591]
 gi|223898437|gb|EEF64802.1| flavocytochrome c [Streptococcus suis 89/1591]
          Length = 505

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +  SYDVIV+G G AG  AA  A   GAS AL       +  +  N A    G
Sbjct: 59  LKDSYDVIVVGSGGAGMSAAISAKDAGASVAL----LEKMPVIGGNTAKSSAG 107


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
 gi|254040352|gb|ACT57148.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 481

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++R YD+I+IG G AG  AA  AA+LG   A++
Sbjct: 1  MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIV 33


>gi|167578214|ref|ZP_02371088.1| putative monooxygenase [Burkholderia thailandensis TXDOH]
          Length = 388

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGKG 56
           M N   DV++ G G AG   A +    G    ++     H+      +     IG + K 
Sbjct: 1   MKNNQIDVLINGSGIAGVALAHLLGTRGHGVTVVERAARHRAQNGADLLKPSGIGVVHKM 60

Query: 57  HLVREIDALDGL----MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
            L+ ++ A  GL    M    D   I    L+ +   A+ G       E  R  +  ++ 
Sbjct: 61  GLLDDVIAAGGLRRDAMKLFHDKELIAS--LDYRTSSAL-GFFILIPCEQLRRLLLAKLD 117

Query: 113 SQENLDVI-QGEVAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
              N+ +  +  +          ++S+V+ D   +    +V   G   R +I    L++P
Sbjct: 118 GMPNVRLRFETSIERIEQDADGTVTSVVLSDGETVAPKALVGADGA--RSMIRSDVLRVP 175

Query: 171 AGRM-----GDSPSNSLFNSFMK 188
           A RM         + +L +S  +
Sbjct: 176 AERMPYATPMAFGTIALTDSVRE 198


>gi|146322001|ref|YP_001201712.1| fumarate reductase flavoprotein subunit [Streptococcus suis
           98HAH33]
 gi|145692807|gb|ABP93312.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Streptococcus suis 98HAH33]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +  SYDVIV+G G AG  AA  A   GAS AL       +  +  N A    G
Sbjct: 63  LKDSYDVIVVGSGGAGMSAAISAKDAGASVAL----LEKMPVIGGNTAKSSAG 111


>gi|146319808|ref|YP_001199520.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Streptococcus suis 05ZYH33]
 gi|145690614|gb|ABP91120.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Streptococcus suis 05ZYH33]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +  SYDVIV+G G AG  AA  A   GAS AL       +  +  N A    G
Sbjct: 63  LKDSYDVIVVGSGGAGMSAAISAKDAGASVAL----LEKMPVIGGNTAKSSAG 111


>gi|126435663|ref|YP_001071354.1| L-aspartate oxidase [Mycobacterium sp. JLS]
 gi|126235463|gb|ABN98863.1| L-aspartate oxidase [Mycobacterium sp. JLS]
          Length = 535

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV+VIG G AG  A   A + G    +++      GS +   A GG+ 
Sbjct: 18 DVVVIGTGVAGLVAGLAAHRRGRRVIVLSKAPEQAGSTATGYAQGGIA 65


>gi|153006334|ref|YP_001380659.1| FAD dependent oxidoreductase [Anaeromyxobacter sp. Fw109-5]
 gi|152029907|gb|ABS27675.1| FAD dependent oxidoreductase [Anaeromyxobacter sp. Fw109-5]
          Length = 536

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++DVIV+GGGH G   AA  A+ G    ++
Sbjct: 3  TWDVIVVGGGHNGLVLAAYLARAGERVLVL 32


>gi|94495163|ref|ZP_01301744.1| hypothetical protein SKA58_01680 [Sphingomonas sp. SKA58]
 gi|94425429|gb|EAT10449.1| hypothetical protein SKA58_01680 [Sphingomonas sp. SKA58]
          Length = 551

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YDV+V+G G AG  AA  AA  G S  +               A+ G G
Sbjct: 3  EYDVVVVGSGAAGMTAAIRAASAGLSVLV----LEKAAHFGGTTAVSGGG 48


>gi|50364879|ref|YP_053304.1| thioredoxin reductase NADPH [Mesoplasma florum L1]
 gi|50363435|gb|AAT75420.1| thioredoxin reductase NADPH [Mesoplasma florum L1]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 46/153 (30%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++IGGG AG  A   AA+ G  T ++                          E +A  
Sbjct: 11  DILIIGGGPAGLTAGVYAARAGMKTIIL--------------------------EKEAPG 44

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL--DVIQGEV 124
           G M +        +   +  KGP +         ++Y   M        NL  + +  EV
Sbjct: 45  GKMVKT--DTIENYPGFDSIKGPDLAL-------KMYMQVM--------NLGAEFVYDEV 87

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
                  N    +   +  +I   +V++ TGT 
Sbjct: 88  IKIEKMDNYFI-VTTLNGQIIEALSVIVATGTL 119


>gi|124266431|ref|YP_001020435.1| hypothetical protein Mpe_A1238 [Methylibium petroleiphilum PM1]
 gi|124259206|gb|ABM94200.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 414

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          S+DV+VIG G AG   A VA + G    L+ H
Sbjct: 6  SFDVVVIGAGAAGLFCAGVAGQRGLRVLLVDH 37


>gi|311899472|dbj|BAJ31880.1| putative dihydrolipoamide dehydrogenase [Kitasatospora setae
          KM-6054]
          Length = 468

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          ++  YDV+V+G G  G  AA  +A+LG  TA+I  K        +G +     +      
Sbjct: 1  MSTHYDVVVLGAGPGGYTAAVRSAQLGLRTAVIEAKYWGGVCLNVGCIPSKALLRNAELA 60

Query: 57 HLV-REIDALD 66
          H V  E +   
Sbjct: 61 HTVLNEAELYG 71


>gi|307332357|ref|ZP_07611429.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces violaceusniger Tu 4113]
 gi|306882004|gb|EFN13118.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces violaceusniger Tu 4113]
          Length = 507

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV V+G G AG  AA   A+ G   ALI
Sbjct: 9  TYDVAVVGAGPAGLSAAVGVAEAGLDVALI 38


>gi|295085873|emb|CBK67396.1| dihydrolipoamide dehydrogenase [Bacteroides xylanisolvens XB1A]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKGGLSVLLIEKN 34


>gi|295692824|ref|YP_003601434.1| fumarate reductase, flavoprotein subunit [Lactobacillus crispatus
          ST1]
 gi|295030930|emb|CBL50409.1| Fumarate reductase, flavoprotein subunit [Lactobacillus crispatus
          ST1]
          Length = 458

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   YD IV+G G AG  AA  A +LG +  ++       G  +   + G      LV
Sbjct: 7  LKNKYDAIVVGSGGAGLTAALQAHELGLNVVVLEKN-EKTGGNTSRASSGMNASESLV 63


>gi|293371181|ref|ZP_06617717.1| dihydrolipoyl dehydrogenase [Bacteroides ovatus SD CMC 3f]
 gi|292633742|gb|EFF52295.1| dihydrolipoyl dehydrogenase [Bacteroides ovatus SD CMC 3f]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKGGLSVLLIEKN 34


>gi|227877081|ref|ZP_03995164.1| succinate dehydrogenase [Lactobacillus crispatus JV-V01]
 gi|256850322|ref|ZP_05555751.1| fumarate reductase flavoprotein [Lactobacillus crispatus
          MV-1A-US]
 gi|262046000|ref|ZP_06018964.1| fumarate reductase flavoprotein [Lactobacillus crispatus
          MV-3A-US]
 gi|293380546|ref|ZP_06626606.1| flavoCytochrome c [Lactobacillus crispatus 214-1]
 gi|312977208|ref|ZP_07788956.1| fumarate reductase, flavoprotein subunit [Lactobacillus crispatus
          CTV-05]
 gi|227863329|gb|EEJ70765.1| succinate dehydrogenase [Lactobacillus crispatus JV-V01]
 gi|256712959|gb|EEU27951.1| fumarate reductase flavoprotein [Lactobacillus crispatus
          MV-1A-US]
 gi|260573959|gb|EEX30515.1| fumarate reductase flavoprotein [Lactobacillus crispatus
          MV-3A-US]
 gi|290922884|gb|EFD99826.1| flavoCytochrome c [Lactobacillus crispatus 214-1]
 gi|310895639|gb|EFQ44705.1| fumarate reductase, flavoprotein subunit [Lactobacillus crispatus
          CTV-05]
          Length = 458

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +   YD IV+G G AG  AA  A +LG +  ++       G  +   + G      LV
Sbjct: 7  LKNKYDAIVVGSGGAGLTAALQAHELGLNVVVLEKN-EKTGGNTSRASSGMNASESLV 63


>gi|224367892|ref|YP_002602055.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Desulfobacterium autotrophicum HRM2]
 gi|223690608|gb|ACN13891.1| GlpB2 [Desulfobacterium autotrophicum HRM2]
          Length = 429

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTAL 33
          D++VIG G AG  AA  AA LG  T L
Sbjct: 10 DLLVIGAGLAGMVAAVRAAHLGLRTVL 36


>gi|212533951|ref|XP_002147132.1| 3-ketosteroid-delta-1-dehydrogenase, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072496|gb|EEA26585.1| 3-ketosteroid-delta-1-dehydrogenase, putative [Penicillium
           marneffei ATCC 18224]
          Length = 561

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M N    VI++GGG AG  AA   ++ G  T ++  +            +GG        
Sbjct: 1   MTNDKSPVIIVGGGLAGLVAATELSRRGVHTVIVDQENEA--------NLGGQ------- 45

Query: 61  EIDALDGLMGRVADAAGIQFRV-LNVKKGPAV--RGPRTQADRE 101
              A   L G     +  Q R+ +   +  A+       Q DR+
Sbjct: 46  ---AFWSLGGLFCVNSASQRRLGIKDSRELAMQDWFNTAQFDRD 86


>gi|167746778|ref|ZP_02418905.1| hypothetical protein ANACAC_01490 [Anaerostipes caccae DSM 14662]
 gi|167653738|gb|EDR97867.1| hypothetical protein ANACAC_01490 [Anaerostipes caccae DSM 14662]
          Length = 455

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          D+IVIGGG AG  AA  AA+ G    L   K
Sbjct: 5  DLIVIGGGPAGYLAAQRAAESGMKVLLFEKK 35


>gi|167566429|ref|ZP_02359345.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          oklahomensis EO147]
 gi|167573540|ref|ZP_02366414.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          oklahomensis C6786]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLSRAGLSVCVLS 42


>gi|160884900|ref|ZP_02065903.1| hypothetical protein BACOVA_02890 [Bacteroides ovatus ATCC 8483]
 gi|156109935|gb|EDO11680.1| hypothetical protein BACOVA_02890 [Bacteroides ovatus ATCC 8483]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           Y VI+IGGG AG  AA  A K G S  LI   
Sbjct: 2  KYQVIIIGGGPAGYTAAEAAGKGGLSVLLIEKN 34


>gi|190014657|ref|YP_001967421.1| LecG [Agrobacterium tumefaciens]
 gi|71849460|gb|AAZ50408.1| LecG [Agrobacterium tumefaciens]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 14/109 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL----ITH------KTSTIGSMSCNPAIG 51
           ++R  D++++G G AG  AA  A + G +  +    +T           +        +G
Sbjct: 1   MSRHVDLLIVGAGPAGMTAAVAARRHGLNVLVVDEQLTPGGQIWRNVEALAGTPRMDLLG 60

Query: 52  GLGKG--HLVREIDALDG--LMGRVADAAGIQFRVLNVKKGPAVRGPRT 96
              +   ++VR+  A       G          R    + G A     T
Sbjct: 61  KAYEEGLNVVRQFRASGANYEPGTQVWQVETGHRAYVTRAGSASSIDAT 109


>gi|118588078|ref|ZP_01545488.1| glutathione reductase [Stappia aggregata IAM 12614]
 gi|118439700|gb|EAV46331.1| glutathione reductase [Stappia aggregata IAM 12614]
          Length = 458

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M + +YD+ VIGGG  G  AA +AA  GA   +
Sbjct: 1  MTDYNYDLFVIGGGSGGVRAARIAATHGARVGI 33


>gi|15890903|ref|NP_356575.1| sarcosine oxidase alpha subunit [Agrobacterium tumefaciens str.
           C58]
 gi|15159208|gb|AAK89360.1| sarcosine oxidase alpha subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 986

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           DV+V G G AG  AA  AAK GAS  L+       G++ 
Sbjct: 172 DVLVAGAGVAGLTAALSAAKTGASVILVDENAEIGGALR 210


>gi|53716139|ref|YP_106306.1| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei
          ATCC 23344]
 gi|76818005|ref|YP_335950.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 1710b]
 gi|121597140|ref|YP_991217.1| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei
          SAVP1]
 gi|124381415|ref|YP_001025628.1| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei
          NCTC 10229]
 gi|126444909|ref|YP_001063464.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 668]
 gi|126447504|ref|YP_001077702.1| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei
          NCTC 10247]
 gi|126456585|ref|YP_001076365.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 1106a]
 gi|134278642|ref|ZP_01765356.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 305]
 gi|167000015|ref|ZP_02265842.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei PRL-20]
 gi|167724522|ref|ZP_02407758.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei DM98]
 gi|167743480|ref|ZP_02416254.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 14]
 gi|167829026|ref|ZP_02460497.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 9]
 gi|167850502|ref|ZP_02476010.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei B7210]
 gi|167899097|ref|ZP_02486498.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 7894]
 gi|167907442|ref|ZP_02494647.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei NCTC 13177]
 gi|167915780|ref|ZP_02502871.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 112]
 gi|167923619|ref|ZP_02510710.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei BCC215]
 gi|217422232|ref|ZP_03453735.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 576]
 gi|226195802|ref|ZP_03791389.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei Pakistan 9]
 gi|237508482|ref|ZP_04521197.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei MSHR346]
 gi|238561705|ref|ZP_00441505.2| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei GB8 horse 4]
 gi|242312340|ref|ZP_04811357.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1106b]
 gi|254176417|ref|ZP_04883075.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei ATCC 10399]
 gi|254184977|ref|ZP_04891566.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1655]
 gi|254186204|ref|ZP_04892722.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei Pasteur 52237]
 gi|254193710|ref|ZP_04900142.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei S13]
 gi|254203287|ref|ZP_04909648.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei FMH]
 gi|254205166|ref|ZP_04911519.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei JHU]
 gi|254264380|ref|ZP_04955245.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1710a]
 gi|254301258|ref|ZP_04968702.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 406e]
 gi|254359292|ref|ZP_04975564.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei 2002721280]
 gi|52422109|gb|AAU45679.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei ATCC 23344]
 gi|76582478|gb|ABA51952.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1710b]
 gi|121224938|gb|ABM48469.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei SAVP1]
 gi|126224400|gb|ABN87905.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 668]
 gi|126230353|gb|ABN93766.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1106a]
 gi|126240358|gb|ABO03470.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei NCTC 10247]
 gi|134250426|gb|EBA50506.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 305]
 gi|147745526|gb|EDK52605.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei FMH]
 gi|147754752|gb|EDK61816.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei JHU]
 gi|148028479|gb|EDK86439.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei 2002721280]
 gi|157811218|gb|EDO88388.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 406e]
 gi|157933890|gb|EDO89560.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei Pasteur 52237]
 gi|160697459|gb|EDP87429.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei ATCC 10399]
 gi|169650461|gb|EDS83154.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei S13]
 gi|184215569|gb|EDU12550.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1655]
 gi|217394463|gb|EEC34482.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 576]
 gi|225932287|gb|EEH28287.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei Pakistan 9]
 gi|235000687|gb|EEP50111.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei MSHR346]
 gi|238523944|gb|EEP87379.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei GB8 horse 4]
 gi|242135579|gb|EES21982.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1106b]
 gi|243063968|gb|EES46154.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei PRL-20]
 gi|254215382|gb|EET04767.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          pseudomallei 1710a]
 gi|261826306|gb|ABN00094.2| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          mallei NCTC 10229]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLSRAGLSVCVLS 42


>gi|20808307|ref|NP_623478.1| GTPase (dynamin-related) [Thermoanaerobacter tengcongensis MB4]
 gi|20516910|gb|AAM25082.1| predicted GTPases (dynamin-related) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 585

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 40/191 (20%)

Query: 412 IDDLTSKGVLEPYRMFTSRAEYRISLRP--DNADNRLTPIGMKLGCIGERRQKRFAKYIQ 469
           ID +T K + E           R  +R    N+D  L PI  KL   G+  +   +    
Sbjct: 207 IDYVTEKELKEIVTY------NRNIIREITGNSDIFLYPISAKLALEGKLLKDEGSLKKS 260

Query: 470 EYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK-- 527
               L + L++ +L  K                     L     +I+ + S+C    +  
Sbjct: 261 GVQMLENDLRNFLLGEKEK-----------------VLLERYTKNIKRIISMCKTFFESN 303

Query: 528 --FSSLVIERLQIESS-YAAYTG---RQMIEAKEIKFEEKRLIPKDFD-----YSSLPAL 576
                + +E+L+     +  Y     R   E   +   + + I ++FD     Y  L  L
Sbjct: 304 IRLKLIPLEQLEANIKAFEKYIEEVERAKKEISLLLRSDMKKILQNFDEKSEEYKKL--L 361

Query: 577 SNELKEKLSIL 587
           S  + EK++  
Sbjct: 362 SVRVSEKVNNY 372


>gi|312866550|ref|ZP_07726765.1| dihydrolipoyl dehydrogenase [Streptococcus parasanguinis F0405]
 gi|311097849|gb|EFQ56078.1| dihydrolipoyl dehydrogenase [Streptococcus parasanguinis F0405]
          Length = 567

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  +A  AA+LG   AL+
Sbjct: 109 DDAYDIVVIGGGPAGYVSAIKAAQLGGKVALV 140


>gi|309806382|ref|ZP_07700394.1| putative fumarate reductase flavoprotein subunit [Lactobacillus
          iners LactinV 03V1-b]
 gi|308167213|gb|EFO69380.1| putative fumarate reductase flavoprotein subunit [Lactobacillus
          iners LactinV 03V1-b]
          Length = 164

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD IVIG G AG  AA  A +LG   A++       G+ +   +     + ++  +   +
Sbjct: 18 YDAIVIGSGGAGLSAAIQAHELGLKVAILEKNNKLGGNTARASSGMNAAETNIQYQQGII 77

Query: 66 DGL 68
          D +
Sbjct: 78 DSM 80


>gi|296270118|ref|YP_003652750.1| FAD dependent oxidoreductase [Thermobispora bispora DSM 43833]
 gi|296092905|gb|ADG88857.1| FAD dependent oxidoreductase [Thermobispora bispora DSM 43833]
          Length = 505

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D +++G GH G  AAA  AK G    ++
Sbjct: 1  MQQAHFDAVIVGAGHNGLVAAAYLAKAGRRVLVL 34


>gi|294495257|ref|YP_003541750.1| geranylgeranyl reductase [Methanohalophilus mahii DSM 5219]
 gi|292666256|gb|ADE36105.1| geranylgeranyl reductase [Methanohalophilus mahii DSM 5219]
          Length = 398

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG---KGHLVREI 62
           YDV V+G G  G  AA  AA  GA  AL+    +    + C   +             + 
Sbjct: 3   YDVAVVGAGPVGSVAARHAALHGAKVALLEEHATVGSPVQCAGLLSVRAMDECDISPTDP 62

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
             ++ + G    + G     ++  +  A    R   DR+L
Sbjct: 63  SVINSVRGAFVHSPGGTCLPVDGGRTRAFVVSRKMFDRKL 102


>gi|260578693|ref|ZP_05846601.1| 3-ketosteroid-delta-1-dehydrogenase [Corynebacterium jeikeium
          ATCC 43734]
 gi|258603190|gb|EEW16459.1| 3-ketosteroid-delta-1-dehydrogenase [Corynebacterium jeikeium
          ATCC 43734]
          Length = 559

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++G G AG  AA  A K G    ++
Sbjct: 8  DVIIVGAGLAGLVAAYEAQKSGLKVLIL 35


>gi|73973198|ref|XP_867013.1| PREDICTED: similar to PHD finger protein 3 isoform 2 [Canis
            familiaris]
          Length = 1924

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 428  TSRAEYRISLRPDNADN---RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
             S  + R S+R    D    RLT   +K   + E +  + A  I++   L S  +     
Sbjct: 924  PSADQIRQSVRHSLKDILMRRLTESNLK---VPEEKAAKVATKIEK--ELFSFFRDTDAK 978

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             KN   + +   +D K    ++ +   + +  +L  + P+      L   R +       
Sbjct: 979  YKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 1038

Query: 545  YTGRQMIEAKE 555
               ++  E + 
Sbjct: 1039 MIEKEQREVER 1049


>gi|73973196|ref|XP_538985.2| PREDICTED: similar to PHD finger protein 3 isoform 1 [Canis
            familiaris]
          Length = 2043

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 428  TSRAEYRISLRPDNADN---RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
             S  + R S+R    D    RLT   +K   + E +  + A  I++   L S  +     
Sbjct: 924  PSADQIRQSVRHSLKDILMRRLTESNLK---VPEEKAAKVATKIEK--ELFSFFRDTDAK 978

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             KN   + +   +D K    ++ +   + +  +L  + P+      L   R +       
Sbjct: 979  YKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 1038

Query: 545  YTGRQMIEAKE 555
               ++  E + 
Sbjct: 1039 MIEKEQREVER 1049


>gi|118468812|ref|YP_886996.1| alanine dehydrogenase [Mycobacterium smegmatis str. MC2 155]
 gi|21239172|gb|AAM44187.1|AF304867_1 L-alanine dehydrogenase [Mycobacterium smegmatis str. MC2 155]
 gi|118170099|gb|ABK70995.1| alanine dehydrogenase [Mycobacterium smegmatis str. MC2 155]
          Length = 371

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           +V+VIG G AG  AA VAA +GA   +     +T+
Sbjct: 170 EVVVIGAGTAGYNAARVAAGMGAHVTVFDLNINTL 204


>gi|33188342|gb|AAP97897.1| putative L-alanine dehydrogenase [Mycobacterium smegmatis str.
          MC2 155]
          Length = 206

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
          +V+VIG G AG  AA VAA +GA   +     +T+
Sbjct: 5  EVVVIGAGTAGYNAARVAAGMGAHVTVFDLNINTL 39


>gi|68535993|ref|YP_250698.1| putative FAD-binding dehydrogenase [Corynebacterium jeikeium
          K411]
 gi|68263592|emb|CAI37080.1| hypothetical protein jk0916 [Corynebacterium jeikeium K411]
          Length = 559

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++G G AG  AA  A K G    ++
Sbjct: 8  DVIIVGAGLAGLVAAYEAQKSGLKVLIL 35


>gi|30250246|ref|NP_842316.1| dihydrolipoamide dehydrogenase [Nitrosomonas europaea ATCC 19718]
 gi|30181041|emb|CAD86231.1| pdA3; dihydrolipoamide dehydrogenase E3 component [Nitrosomonas
          europaea ATCC 19718]
          Length = 490

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +DV VIG G  G  AA   A+LG +T           +    P++GG 
Sbjct: 1  MDNLFDVAVIGAGPGGYVAAIRCAQLGLNTVC----IDDWKNEQGKPSLGGT 48


>gi|83951531|ref|ZP_00960263.1| Glucose-methanol-choline oxidoreductase:FAD
          dependentoxidoreductase:GMC oxidoreductase [Roseovarius
          nubinhibens ISM]
 gi|83836537|gb|EAP75834.1| Glucose-methanol-choline oxidoreductase:FAD
          dependentoxidoreductase:GMC oxidoreductase [Roseovarius
          nubinhibens ISM]
          Length = 554

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 1  MINRSYDVIVIGGGHAGC-EAAAVAAKLGASTALI-THKTSTIGSMSCNPAIGGLGKGHL 58
          M  + +D IVIGGG AGC  A  ++A  G    L+   K  +   +        +  G+L
Sbjct: 3  MAEQGFDYIVIGGGSAGCLMANRLSADPGRRVLLLEAGKADSYAWIH-------IPVGYL 55

Query: 59 VREIDALDGLMGRVADAAGIQFRVLNVKKG 88
              +     M       G+  RVL   +G
Sbjct: 56 YCIGNPRADWMYHTEADKGLNGRVLRYPRG 85


>gi|114331750|ref|YP_747972.1| dihydrolipoamide dehydrogenase [Nitrosomonas eutropha C91]
 gi|114308764|gb|ABI60007.1| dihydrolipoamide dehydrogenase [Nitrosomonas eutropha C91]
          Length = 486

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +N  +DV VIG G  G  AA   A+LG +T           +    P++GG 
Sbjct: 1  MNNIFDVAVIGAGPGGYVAAIRCAQLGLNTVC----IDDWKNEQGRPSLGGT 48


>gi|322387858|ref|ZP_08061466.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus infantis
           ATCC 700779]
 gi|321141360|gb|EFX36857.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus infantis
           ATCC 700779]
          Length = 567

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD++VIGGG AG  +A  AA+LG   AL+
Sbjct: 109 DDAYDIVVIGGGPAGYVSAIKAAQLGGKVALV 140


>gi|313837697|gb|EFS75411.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL037PA2]
 gi|314927423|gb|EFS91254.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL044PA1]
 gi|314972636|gb|EFT16733.1| dihydrolipoyl dehydrogenase [Propionibacterium acnes HL037PA3]
 gi|328907506|gb|EGG27272.1| dihydrolipoamide dehydrogenase [Propionibacterium sp. P08]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 13/176 (7%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
           ++  +DV+V+G G  G  AA  AA+LG  TA+I  +        +G +     +      
Sbjct: 1   MSSHFDVVVLGAGPGGYVAAIRAAQLGKKTAIIEKEYWGGVCLNVGCIPTKSLLRNAELA 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H+V +     G+ G +    G  F          V+G      +            +   
Sbjct: 61  HIVTKDAKTFGIGGDITVDFGKAFSRSREVSARMVKGIHFLMKKNKISEFNGWGEFTGP- 119

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT-GTFLRGVIHIGKLKIPA 171
                 +          ++  +  DN++I   +VV T  GT L   +   K +I +
Sbjct: 120 ------KAISVKDSGGNVTDEITFDNAIIAAGSVVKTLPGTQLSERVVTYKEQILS 169


>gi|291562346|emb|CBL41162.1| thioredoxin-disulfide reductase [butyrate-producing bacterium
           SS3/4]
          Length = 309

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 29/162 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD++V+GGG  G  AA  AA+ G  T ++  K S  G M+            L  +I
Sbjct: 4   NHVYDMLVVGGGPGGYTAALYAARSGLDTVVLE-KLSAGGQMA------------LTEQI 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D   G      +     F +    +  A R       R  Y   ++ ++ +   L     
Sbjct: 51  DNYPGF-----ENGIDGFSLAEKMQKQAERFGA----RSEYAEVLRMDLTAVPKL----- 96

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                +       ++V+   +  R   V   T    RGV + 
Sbjct: 97  --VETSEGIFRGKTVVLATGADPRTLGVAGETELLGRGVAYC 136


>gi|256422554|ref|YP_003123207.1| hypothetical protein Cpin_3542 [Chitinophaga pinensis DSM 2588]
 gi|256037462|gb|ACU61006.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 758

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 38/217 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IV GGG AG   A  AA+ G    L          +   P +GG     +   +    
Sbjct: 20  DLIVTGGGLAGVCCAITAARAGIKVIL----------VQDRPVLGGNSSSEVRLWVLGAT 69

Query: 67  GLMG---RVADAAGIQFRVL--NVKKGPAVRGPRTQADRELYRLAMQREILSQENL-DVI 120
             MG   R A   G+   ++  N+ + P            +Y   +  ++ S+ N+  ++
Sbjct: 70  SHMGNNNRWAREGGVVDEIMTENIWRNPDGNPL-------IYDTILLEKVTSEPNIRLLL 122

Query: 121 QGEVAGFNTEKNIISSIVMQDNS------MIRCSTVVLTTGT----FLRGVIHIGKLKIP 170
              V     +   +   VM   S       +        +G     FL G       +  
Sbjct: 123 NTAVFEVKKKSADVIEEVMAFCSQNSTLYELSAPLFCDASGDGIVAFLAGAAFRMGAESE 182

Query: 171 AGRMGDSPSNS-----LFNSFMKFDFDTGRLKTGTPA 202
           +        ++     L +S   +  DTGR  T  P 
Sbjct: 183 SEFGEQFAPSAEYGELLGHSLYFYTKDTGRPTTFVPP 219


>gi|296141661|ref|YP_003648904.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Tsukamurella paurometabola DSM 20162]
 gi|296029795|gb|ADG80565.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Tsukamurella paurometabola DSM 20162]
          Length = 571

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D IV+G G AG  AA   ++ G    ++
Sbjct: 14 DAIVVGAGLAGLVAAYELSRAGRRVLIL 41


>gi|303278634|ref|XP_003058610.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459770|gb|EEH57065.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 493

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 26/180 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSM---SCNPAIGGLGKGH 57
            +DVIV+G G AG   A      G    L+    S     +G +        +  LG  H
Sbjct: 16  EWDVIVVGAGVAGASLAYTLGNEGRRVLLLERDLSEPVRIVGELLQPGGYLKLKELGLAH 75

Query: 58  LVREIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            V +IDA    G      D   +    L   +G  V G      R  + + ++      +
Sbjct: 76  CVDKIDAQKVYGYAMYKDDGEALVGYPLE-GRGDDVAGRSFHNGR--FVMRLREAARGCD 132

Query: 116 NLDVIQGEVAGFNTEK---------NIISSIV--MQDNSM---IRCSTVVLTTGTFLRGV 161
            +D+ Q  V     +           +I  +   ++D            V+  G F    
Sbjct: 133 RVDLRQATVKKLLAQDGAEWTAESGGVIGGVRAAVKDGGEERSFMAPLTVVCDGYFSSFR 192


>gi|209528019|ref|ZP_03276500.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Arthrospira maxima CS-328]
 gi|209491538|gb|EDZ91912.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Arthrospira maxima CS-328]
          Length = 575

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 43/210 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AG  AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGSRAAVEIARTDPSLNIAVIAKTHPIRSHSVAAQGGIAATLNNVDPED 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQADRE 101
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  TWEAHAFDTVKGSDYLADQDAVEILAKEAPDVIIDLEHMGVLF-SRLPDGRIAQRAFGGH 121

Query: 102 LYRL----------AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQ-----DN 142
            +R           A+  E+++   +  + +     V     E+     +VM        
Sbjct: 122 THRRTCYAADKTGHAILHELVNNLRRYGVHIYDEWYVMRLILEEGEAKGVVMYNILDGTI 181

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + R   V+  TG + R            G
Sbjct: 182 QVARAKAVMFATGGYGRAFNTTSNDFASTG 211


>gi|206601553|gb|EDZ38036.1| Glutamate synthase, small subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 613

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V VIGGG AG  AA   A+LG    +    
Sbjct: 124 VAVIGGGPAGLTAAHDLARLGYRITMFEAN 153


>gi|170748718|ref|YP_001754978.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655240|gb|ACB24295.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 422

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG 70
           IGGG  G EAA   A+LG  T L+ H    +        +     G + R ++A    + 
Sbjct: 169 IGGGLLGLEAAVGLARLGVETTLL-HVMDRLMERQ----LDHHAAGLVKRAMEARGVRVI 223

Query: 71  RVAD----AAGIQFRVLNVKKGPAVRGP 94
             AD        +   L +  G A+   
Sbjct: 224 LEADTARVEGASRVERLVLADGTALPAD 251


>gi|168701423|ref|ZP_02733700.1| soluble pyridine nucleotide transhydrogenase [Gemmata obscuriglobus
           UQM 2246]
          Length = 483

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++D++VIG G  G  AA   A+LG   A++  K   +G  + N   G L    L     A
Sbjct: 6   NFDLVVIGAGPGGETAALTGARLGKRVAVVE-KAPFVGGAAVNT--GTLPSKTLRETALA 62

Query: 65  LDGLMGRVADAAGIQFR-VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           L G   R  D  G+      N+    A+R  RT   +  +R  + R +L +  + V+ G 
Sbjct: 63  LSGY--RSRDLHGVDLSLRRNITVDDALRHERT--IKAAHRDQI-RGLLDRYGVTVVHGT 117

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                     ++         +    VV+ TG+
Sbjct: 118 ARFAGPNVIQVAGDGDASERELVADKVVIATGS 150


>gi|157372920|ref|YP_001480909.1| hypothetical protein Spro_4688 [Serratia proteamaculans 568]
 gi|157324684|gb|ABV43781.1| HI0933 family protein [Serratia proteamaculans 568]
          Length = 413

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DV+VIG G AG   AA A +LG    L+
Sbjct: 17 EQFDVVVIGAGAAGMFCAAQAGQLGRRALLL 47


>gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum pernix K1]
 gi|116062640|dbj|BAA80046.2| thioredoxin reductase [Aeropyrum pernix K1]
          Length = 337

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK----TSTIGSMSCNPAIGGLGKGHLV 59
             YD +++G G AG  AA    +   ST +++       +    +   P +GGL    LV
Sbjct: 17  EEYDTVIVGAGPAGLSAAIYTTRFLMSTLIVSMDVGGQLNLTNWIDDYPGMGGLEASKLV 76

Query: 60  RE---------IDALDGLMGRVADAAGIQFRVLNVKKG 88
                         + G+  +  D     + ++   +G
Sbjct: 77  ESFKSHAEMFGAKIVTGVQVKTVDRLDDGWFLVRGSRG 114


>gi|108800033|ref|YP_640230.1| L-aspartate oxidase [Mycobacterium sp. MCS]
 gi|119869159|ref|YP_939111.1| L-aspartate oxidase [Mycobacterium sp. KMS]
 gi|108770452|gb|ABG09174.1| L-aspartate oxidase [Mycobacterium sp. MCS]
 gi|119695248|gb|ABL92321.1| L-aspartate oxidase [Mycobacterium sp. KMS]
          Length = 548

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV+VIG G AG  A   A + G    +++      GS +   A GG+ 
Sbjct: 31 DVVVIGTGVAGLVAGLAAHRRGRRVIVLSKAPEQAGSTATGYAQGGIA 78


>gi|52548829|gb|AAU82678.1| conserved hypothetical protein [uncultured archaeon GZfos19A5]
          Length = 428

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           R YD++V+GGG AGC AA  AAK GAST +I    +    + C   I          E+ 
Sbjct: 9   REYDIVVVGGGPAGCMAAKYAAKAGASTLIIEENPAIGEPVQCAGLISKRAIEES--ELK 66

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQREILSQENLDVIQG 122
                +      A +  +             R +         A++R+I  +E       
Sbjct: 67  NTGSFVNCELKGAIVHSQ---------SHELRIEVPSPEKSAFAIRRDIFDKELAKAAMD 117

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           E A      + +  +  +          +L   T     +++ + +I A
Sbjct: 118 EGAELIL-NSRVKHVK-KGGERDSAKLTILAAATTTNAGVNLEENEIKA 164


>gi|53722739|ref|YP_111724.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei K96243]
 gi|167820666|ref|ZP_02452346.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei 91]
 gi|52213153|emb|CAH39192.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          pseudomallei K96243]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLSRAGLSVCVLS 42


>gi|83718253|ref|YP_438861.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          thailandensis E264]
 gi|167577226|ref|ZP_02370100.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          thailandensis TXDOH]
 gi|167615385|ref|ZP_02384020.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          thailandensis Bt4]
 gi|257141948|ref|ZP_05590210.1| succinate dehydrogenase flavoprotein subunit [Burkholderia
          thailandensis E264]
 gi|83652078|gb|ABC36142.1| succinate dehydrogenase, flavoprotein subunit [Burkholderia
          thailandensis E264]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          R +DV+++G G +G  A+   ++ G S  +++
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLSRAGLSVCVLS 42


>gi|45200821|ref|NP_986391.1| AGL276Wp [Ashbya gossypii ATCC 10895]
 gi|74692207|sp|Q751I2|KMO_ASHGO RecName: Full=Kynurenine 3-monooxygenase; AltName:
          Full=Biosynthesis of nicotinic acid protein 4; AltName:
          Full=Kynurenine 3-hydroxylase
 gi|44985519|gb|AAS54215.1| AGL276Wp [Ashbya gossypii ATCC 10895]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          M  +   V VIG G  GC AA   AK G   +L  +++ 
Sbjct: 1  MGEKGESVAVIGAGLVGCLAALAFAKKGYEVSLFDYRSD 39


>gi|329770324|ref|ZP_08261707.1| thioredoxin-disulfide reductase [Gemella sanguinis M325]
 gi|328836682|gb|EGF86338.1| thioredoxin-disulfide reductase [Gemella sanguinis M325]
          Length = 307

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  R YD+I++G G AG  A+  A++   S  ++  K
Sbjct: 1  MTERIYDLIIVGAGPAGMTASIYASRANMSVLMLERK 37


>gi|330005643|ref|ZP_08305321.1| putative dihydrolipoyl dehydrogenase [Klebsiella sp. MS 92-3]
 gi|328536209|gb|EGF62590.1| putative dihydrolipoyl dehydrogenase [Klebsiella sp. MS 92-3]
          Length = 316

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IGGG  G  AA  A +LG  TAL+
Sbjct: 1  MHDNYDVLIIGGGPGGYVAAIRAGQLGLRTALV 33


>gi|332715712|ref|YP_004443178.1| FAD dependent oxidoreductase [Agrobacterium sp. H13-3]
 gi|325062397|gb|ADY66087.1| FAD dependent oxidoreductase [Agrobacterium sp. H13-3]
          Length = 438

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          DV+V+G G+AG  AA   A+ G S  ++   +  +GS  C+   GG+   
Sbjct: 36 DVVVVGSGYAGLAAATHLARAGRSVVVL--DSDRLGS-GCSTRSGGMVSS 82


>gi|297180758|gb|ADI16965.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (e3) component, and related enzymes
          [uncultured Sphingobacteriales bacterium HF0010_19H17]
          Length = 467

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
            YDV VIG G  G  AA   A+LG  TALI  K  T+G    ++ C P+
Sbjct: 2  EKYDVAVIGSGPGGYVAAIRCAQLGMKTALIE-KYDTLGGTCLNVGCIPS 50


>gi|306829231|ref|ZP_07462421.1| thioredoxin-disulfide reductase [Streptococcus mitis ATCC 6249]
 gi|304428317|gb|EFM31407.1| thioredoxin-disulfide reductase [Streptococcus mitis ATCC 6249]
          Length = 303

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G  G  AA  AA+     ALI
Sbjct: 2  YDTIIIGAGPGGMTAALYAARSNLKVALI 30


>gi|293358899|ref|XP_232319.5| PREDICTED: ankyrin repeat domain 26 isoform 2 [Rattus norvegicus]
          Length = 1675

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 425  RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            R+     ++ + L   N       + ++   + ER  +   +  +    +R L + L  T
Sbjct: 1143 RVQAESQKHSLRLEDRN-----QELIIECSHLKERMCQYENEKAEREVAVRQLQQELADT 1197

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             K  S +  S +   + R++ E  +      +NL  +    ++      E +Q       
Sbjct: 1198 LKKQSMSEASLEVSSRYRSSLEEEARDL--KKNLSQLRSQLQEAQDQHREAVQRAEKMQD 1255

Query: 545  YTGRQMIEAKEIK------FEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +  +  +E  + K       EE   + ++    S   LS E +EKL  
Sbjct: 1256 HLQKLELENSKFKITIKTQSEEIEQLQENL---SNGNLSEEDQEKLKK 1300


>gi|293347018|ref|XP_001057458.2| PREDICTED: retinoic acid induced 14-like isoform 1 [Rattus
            norvegicus]
          Length = 1675

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 425  RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            R+     ++ + L   N       + ++   + ER  +   +  +    +R L + L  T
Sbjct: 1143 RVQAESQKHSLRLEDRN-----QELIIECSHLKERMCQYENEKAEREVAVRQLQQELADT 1197

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             K  S +  S +   + R++ E  +      +NL  +    ++      E +Q       
Sbjct: 1198 LKKQSMSEASLEVSSRYRSSLEEEARDL--KKNLSQLRSQLQEAQDQHREAVQRAEKMQD 1255

Query: 545  YTGRQMIEAKEIK------FEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +  +  +E  + K       EE   + ++    S   LS E +EKL  
Sbjct: 1256 HLQKLELENSKFKITIKTQSEEIEQLQENL---SNGNLSEEDQEKLKK 1300


>gi|294495627|ref|YP_003542120.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
 gi|292666626|gb|ADE36475.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
          Length = 784

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+VIGGG AG EAA   A  G    +I
Sbjct: 142 EVLVIGGGVAGIEAALNLADTGYKVHMI 169


>gi|258593532|emb|CBE69873.1| putative FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase [NC10 bacterium 'Dutch sediment']
          Length = 421

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 19/214 (8%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIG G  G +     A  G +T +I             PA+       +  E     G+
Sbjct: 148 VVIGAGLIGIQVVDAFAHRGLNTTVIEQMP------HIMPAMADPVSAAMAEEALREAGV 201

Query: 69  MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFN 128
             R     G++   L  K G    G + +         +        NLD + G     N
Sbjct: 202 TVR----CGVRATELLSKDGCVT-GVKVEGGEVFPCQLLVMAAGVAPNLDFLSGTGVSMN 256

Query: 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI--HIGKLKIPAGRMGDSPSNSLFNSF 186
               + +      + +     V  T   F    +   I    +  GR+       +   +
Sbjct: 257 RGLVVDAYQRTSLDGIYAAGDVAETVDMFSGERVVNAIWPEALNQGRIAGLNMTGVATPY 316

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220
                  G +     + L    +       Q  D
Sbjct: 317 E------GSMAMNVTSVLQTPVVSLGAWNLQPGD 344


>gi|290509968|ref|ZP_06549338.1| dihydrolipoyl dehydrogenase [Klebsiella sp. 1_1_55]
 gi|289776684|gb|EFD84682.1| dihydrolipoyl dehydrogenase [Klebsiella sp. 1_1_55]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IGGG  G  AA  A +LG  TAL+
Sbjct: 1  MHDNYDVLIIGGGPGGYVAAIRAGQLGLRTALV 33


>gi|307727717|ref|YP_003910930.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1003]
 gi|307588242|gb|ADN61639.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1003]
          Length = 446

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLGKGHLVR 60
             +  DV++ G G  GC AA   A+ G S  ++    S I     + A G    +G    
Sbjct: 18  FPQRADVVIAGAGIMGCAAAYYLARRGLSVVVL--DKSRIAGQQSSRAWGFVRQQGRESA 75

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+  +   +    +        L  ++G  +     +AD   ++  M   +  Q  LD  
Sbjct: 76  EVPLMMAGIALWTNLERELDFDLEWRQGGCLYVATDEADWASFQQWMD--VARQHGLDTR 133


>gi|288936974|ref|YP_003441033.1| dihydrolipoamide dehydrogenase [Klebsiella variicola At-22]
 gi|288891683|gb|ADC60001.1| dihydrolipoamide dehydrogenase [Klebsiella variicola At-22]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IGGG  G  AA  A +LG  TAL+
Sbjct: 1  MHDNYDVLIIGGGPGGYVAAIRAGQLGLRTALV 33


>gi|206580221|ref|YP_002240262.1| dihydrolipoyl dehydrogenase [Klebsiella pneumoniae 342]
 gi|206569279|gb|ACI11055.1| dihydrolipoyl dehydrogenase [Klebsiella pneumoniae 342]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +YDV++IGGG  G  AA  A +LG  TAL+
Sbjct: 1  MHDNYDVLIIGGGPGGYVAAIRAGQLGLRTALV 33


>gi|150864419|ref|XP_001383223.2| squalene epoxidase(monooxygenase), erosterol biosynthesis
           [Scheffersomyces stipitis CBS 6054]
 gi|149385675|gb|ABN65194.2| squalene epoxidase(monooxygenase), erosterol biosynthesis
           [Scheffersomyces stipitis CBS 6054]
          Length = 499

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 48/217 (22%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNP----AIGGLG 54
           ++  YDVIVIG G  G   A   A+ G    ++     K   I      P    A+  LG
Sbjct: 5   LDVKYDVIVIGAGVVGPAIATALARQGRKVLIVERDWAKPDRIVGELMQPAGVKALRELG 64

Query: 55  KGHLVREIDALD---------GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL--- 102
               +  I+A D             ++           N  K P     R   D+     
Sbjct: 65  MISAINNIEAFDCRGYYIKYFNKNIQIPYPLKEDTARTNPVK-PVADCVRDGNDKLQEDS 123

Query: 103 ----------------------YRLAMQREILSQENLDVIQGEVAGFNTEKN---IISSI 137
                                 +   +++ +  + N++ ++G V     +     I++ +
Sbjct: 124 TLSPSEWDEDERVRGVAFHHGDFLQNLRQIVKDEPNVEWVEGNVVKILRDNFDSTIVTGV 183

Query: 138 VMQD--NSM-IRCSTVVLTTGTFLRGVIHIGKLKIPA 171
            +++   S        +   G + +    +    +P 
Sbjct: 184 RVKESVGSKDYHAKLTICCDGIYSKFRKELSSNNVPT 220


>gi|159040380|ref|YP_001539633.1| kynurenine 3-monooxygenase [Salinispora arenicola CNS-205]
 gi|223635243|sp|A8LVF4|KMO_SALAI RecName: Full=Kynurenine 3-monooxygenase; AltName:
          Full=Kynurenine 3-hydroxylase
 gi|157919215|gb|ABW00643.1| Kynurenine 3-monooxygenase [Salinispora arenicola CNS-205]
          Length = 454

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 12 GGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR 71
          G G AG  AA   A+ G    +   +     +++  P    +  G   R + ALDG+ G 
Sbjct: 12 GAGLAGSLAALYLARQGHEVDIFERRPDPRSALA-GPEGRSINLGLSARGMRALDGV-GL 69

Query: 72 VAD 74
          +AD
Sbjct: 70 LAD 72


>gi|94263359|ref|ZP_01287174.1| HI0933-like protein [delta proteobacterium MLMS-1]
 gi|93456314|gb|EAT06444.1| HI0933-like protein [delta proteobacterium MLMS-1]
          Length = 296

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  YD I+IG G  G +AA   A+      LI
Sbjct: 1  MADNVYDCIIIGAGPGGLQAAIHLARYNRRVILI 34


>gi|28572710|ref|NP_789490.1| oxidoreductase [Tropheryma whipplei TW08/27]
 gi|28410842|emb|CAD67228.1| putative oxidoreductase [Tropheryma whipplei TW08/27]
          Length = 373

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV +IGGG AG  A    A++G    +    
Sbjct: 7  DVAIIGGGPAGLTAGISLARMGWKVCVFDSN 37


>gi|20094879|ref|NP_614726.1| dehydrogenase (flavoprotein) [Methanopyrus kandleri AV19]
 gi|74559120|sp|Q8TVE9|GGR1_METKA RecName: Full=Digeranylgeranylglycerophospholipid reductase 1;
           Short=DGGGPL reductase 1; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate reductase
           1; AltName: Full=Geranylgeranyl reductase 1; Short=GGR 1
 gi|19888112|gb|AAM02656.1| Dehydrogenase (flavoprotein) [Methanopyrus kandleri AV19]
          Length = 375

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G G AG  AA  AA+ G    ++  K        C   I        + E+  
Sbjct: 2   EFDVVVVGAGPAGSVAAWAAAEAGCDVLILERKAEIGVPKQCAEGISARA----LEEVGI 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                   A+       + +  K            R   +  + R + +   ++++    
Sbjct: 58  RPDDGWIAAEIERGILSLPSGSKFEVEVEGYVLERRVFDKWLVVRAVEAGAEVELLAHAR 117

Query: 125 AGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
                E   +  +    +D    +R   V+   G
Sbjct: 118 RALLDEG-RVVGVEYEGEDGVHEVRARIVIAADG 150


>gi|28493177|ref|NP_787338.1| thioredoxin reductase [Tropheryma whipplei str. Twist]
 gi|28476217|gb|AAO44307.1| putative thioredoxin reductase [Tropheryma whipplei str. Twist]
          Length = 373

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV +IGGG AG  A    A++G    +    
Sbjct: 7  DVAIIGGGPAGLTAGISLARMGWKVCVFDSN 37


>gi|104773873|ref|YP_618853.1| putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513881|ref|YP_812787.1| fumarate reductase, flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422954|emb|CAI97622.1| Putative fumarate reductase (flavoprotein) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093196|gb|ABJ58349.1| Fumarate reductase, flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++N SYD++VIG G  G  AA  A +LGAS A+    
Sbjct: 13 LVNPSYDLVVIGAGGTGLSAALQAHELGASVAVFEKN 49


>gi|325522988|gb|EGD01417.1| FAD dependent oxidoreductase [Burkholderia sp. TJI49]
          Length = 356

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G S  ++
Sbjct: 33 DVVVIGGGFTGLSAALALAQRGVSVIVL 60


>gi|322411979|gb|EFY02887.1| dihydrolipoamide dehydrogenase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 587

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 125 LADGEYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|312870287|ref|ZP_07730415.1| thioredoxin-disulfide reductase [Lactobacillus oris PB013-T2-3]
 gi|311094171|gb|EFQ52487.1| thioredoxin-disulfide reductase [Lactobacillus oris PB013-T2-3]
          Length = 310

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G  G   A  A++      ++
Sbjct: 4  EKKYDVIIIGAGPGGMTTALYASRANLKVVML 35


>gi|302205395|gb|ADL09737.1| Dihydrolipoamide dehydrogenase [Corynebacterium
          pseudotuberculosis C231]
 gi|308275633|gb|ADO25532.1| Dihydrolipoamide dehydrogenase [Corynebacterium
          pseudotuberculosis I19]
          Length = 469

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDV+V+G G  G  AA  AA+LG   A++
Sbjct: 1  MTEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVV 33


>gi|300812530|ref|ZP_07092951.1| putative fumarate reductase flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496487|gb|EFK31588.1| putative fumarate reductase flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 465

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++N SYD++VIG G  G  AA  A +LGAS A+    
Sbjct: 13 LVNPSYDLVVIGAGGTGLSAALQAHELGASVAVFEKN 49


>gi|294339986|emb|CAZ88349.1| Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate
          dehydrogenase complex) (Dihydrolipoamide dehydrogenase)
          [Thiomonas sp. 3As]
          Length = 477

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +D+IVIG G  G  AA  AA+LG + A          +    PA GG 
Sbjct: 1  MSSEFDLIVIGAGPGGYIAAIRAAQLGLNVAC----IDAWRNAQGGPAPGGT 48


>gi|296135821|ref|YP_003643063.1| dihydrolipoamide dehydrogenase [Thiomonas intermedia K12]
 gi|295795943|gb|ADG30733.1| dihydrolipoamide dehydrogenase [Thiomonas intermedia K12]
          Length = 477

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          ++  +D+IVIG G  G  AA  AA+LG + A          +    PA GG 
Sbjct: 1  MSSEFDLIVIGAGPGGYIAAIRAAQLGLNVAC----IDAWRNAQGGPAPGGT 48


>gi|315499059|ref|YP_004087863.1| fad dependent oxidoreductase [Asticcacaulis excentricus CB 48]
 gi|315417071|gb|ADU13712.1| FAD dependent oxidoreductase [Asticcacaulis excentricus CB 48]
          Length = 429

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
          DV V+G G+ G  AA   A+ GA   +I  +    G    N  +   G   +  E+
Sbjct: 33 DVAVVGAGYTGLSAALTLAEAGAKVVVIEAREIGFGGAGRNVGLVNAGMWVMPDEL 88


>gi|294956114|ref|XP_002788813.1| glycerol-3-phosphate dehydrogenase, putative [Perkinsus marinus
          ATCC 50983]
 gi|239904414|gb|EER20609.1| glycerol-3-phosphate dehydrogenase, putative [Perkinsus marinus
          ATCC 50983]
          Length = 81

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M    +D+IV+GGG  G   A   A  G   AL+       G+ S +  +   G G+L  
Sbjct: 7  MTLFRFDIIVVGGGATGSSIALDGASRGLKVALLERNDFGSGTSSRSTKLLHGGIGYLKS 66

Query: 61 EIDALDGLMGRVADA 75
           +  +D  M R+   
Sbjct: 67 ALLGMDLQMLRMIYQ 81


>gi|194289967|ref|YP_002005874.1| dihydrolipoamide dehydrogenase [Cupriavidus taiwanensis LMG
          19424]
 gi|193223802|emb|CAQ69809.1| DIHYDROLIPOAMIDE DEHYDROGENASE (COMPONENT OF PYRUVATE AND
          2-OXOGLUTARATE DEHYDROGENASES COMPLEXES) OXIDOREDUCTASE
          PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNP 37


>gi|152997881|ref|YP_001342716.1| FAD-binding monooxygenase [Marinomonas sp. MWYL1]
 gi|150838805|gb|ABR72781.1| monooxygenase FAD-binding [Marinomonas sp. MWYL1]
          Length = 409

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIG-----SMSCNPAIGGLGKGHLV 59
           YDV+VIG G AG  A+++ +K G    ++                 C   +     G L 
Sbjct: 8   YDVVVIGAGPAGAVASSILSKKGYRVLVLEKQHFPRFSIGESLLPQCMEIL--ESAGMLK 65

Query: 60  REIDALDGLMGRVADAAGIQFRVLN-VKKGPAVRGPRTQADRELY 103
             ++A        A AA  Q+   +  +K     G   Q  R  +
Sbjct: 66  AVVEAGFQYKNGAAFAAKDQYNFFDFREKFSTGWGTTYQVQRAQF 110


>gi|113868298|ref|YP_726787.1| dihydrolipoamide dehydrogenase [Ralstonia eutropha H16]
 gi|124106279|sp|P52992|DLDH_RALEH RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of 2-oxoglutarate dehydrogenase complex
 gi|113527074|emb|CAJ93419.1| dihydrolipoamide dehydrogenase (E3) [Ralstonia eutropha H16]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNP 37


>gi|86361071|ref|YP_472958.1| FAD-dependent oxidoreductase protein [Rhizobium etli CFN 42]
 gi|86285173|gb|ABC94231.1| probable FAD-dependent oxidoreductase protein [Rhizobium etli CFN
          42]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV VIG G  G  AA   AK G    ++
Sbjct: 25 HYDVAVIGAGFTGLAAARQLAKAGVKVVVL 54


>gi|19704498|ref|NP_604060.1| thioredoxin reductase [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|19714774|gb|AAL95359.1| Thioredoxin reductase [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
          Length = 319

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          ++ + YDVI++G G AG  A   A +   ST ++      IGSM     I      H+  
Sbjct: 12 IMEKIYDVIIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSMIMTHQIDNYPGSHIGA 69

Query: 61 EIDALDGLMGRVADAAGIQFR 81
              +   M + A   G + +
Sbjct: 70 SGKEIYDTMKKQALDFGCEIK 90


>gi|1279203|emb|CAA62982.1| dihydrolipoamide dehydrogenase (E3) [Ralstonia eutropha H16]
 gi|1588696|prf||2209294D dihydrolipoamide dehydrogenase
          Length = 474

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNP 37


>gi|329730848|gb|EGG67226.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          21193]
          Length = 473

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+GGG AG  AA  A++ G   A++  +         G +     +     
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQFGKKVAIVERQLLGGTCLHKGCIPTKSLLKSAEV 60

Query: 56 GHLVREIDALD 66
             V++     
Sbjct: 61 FQTVKQAAMFG 71


>gi|315442700|ref|YP_004075579.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
 gi|315261003|gb|ADT97744.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
          Length = 519

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +D IV+G GH G  AAA+  + G  T  +  K    G  S      G
Sbjct: 3  DFDAIVVGAGHNGLTAAALLQQAGLRTVCLDFKLYAGGMASTVELFAG 50


>gi|296535034|ref|ZP_06897304.1| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264639|gb|EFH10994.1| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
           [Roseomonas cervicalis ATCC 49957]
          Length = 392

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 15/170 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK----TSTIGSMSCNPAIGGLGKGHLVR 60
            +D+ +IGGG AG   A   A  G + A++  +        G      A+    +  L+R
Sbjct: 2   QFDIAIIGGGPAGLALATSLAGTGLAVAVVEQQPGAALEQAGFDGREIALTHHSQA-LLR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVR---GPRTQAD--RELYRLAMQREILSQ- 114
           E+ A D L+ + + +   + RVLN     A+R     R +++  + +   A++R +    
Sbjct: 61  EMGAWD-LIPQESISPLREARVLNGGSAYALRFDTSGRAESELGKLVSNHAIRRALYRTA 119

Query: 115 ---ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                + ++ G            + + ++D   +R   +V     F    
Sbjct: 120 TAAPEVTLLAGTGVAGLRTDVEGAEVTLRDGRALRARLLVAADSRFSTAR 169


>gi|290968990|ref|ZP_06560525.1| putative thioredoxin-disulfide reductase [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290780946|gb|EFD93539.1| putative thioredoxin-disulfide reductase [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 550

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+I++GGG AG  AA  AA+      ++
Sbjct: 7  YDLIIVGGGPAGLSAAIYAARARNKVLIV 35


>gi|270264274|ref|ZP_06192541.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Serratia
          odorifera 4Rx13]
 gi|270041923|gb|EFA15020.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Serratia
          odorifera 4Rx13]
          Length = 423

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +DV+VIGGG AG   A   A+ G   A+++
Sbjct: 3  FDVVVIGGGLAGMACAIGLAEQGKRCAVVS 32


>gi|253747883|gb|EET02357.1| T-complex protein-10 [Giardia intestinalis ATCC 50581]
          Length = 821

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 431 AEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSS 490
           AE+   +R  +AD        +   I +    +  K  Q+ +  R+  K      K L++
Sbjct: 366 AEHSERMRKLDADK------AEFDRIRKEEWAKIKKEKQQLDDRRTAFKDKDSKLKELTA 419

Query: 491 TSISFKQDGKTRTAYEFLSYPD----FSIQNLFSICPDARKFSSLVIERLQIESSYAAYT 546
                KQ    +   E +   D     + + L S      + +S + +RL+I    A   
Sbjct: 420 EL--EKQKTSNQKLREDMRRKDNNSRLTSEQLRSKIDTLTEENSNLKKRLEISDKTAIEL 477

Query: 547 GRQMIEAKEIKFEEKRLIPKD 567
            ++++  +++    +  I  D
Sbjct: 478 RQKILNLEKLNKMLQIQIRSD 498


>gi|226357445|ref|YP_002787184.1| FAD dependent oxidoreductase, precursor [Deinococcus deserti
           VCD115]
 gi|226319435|gb|ACO47430.1| putative FAD dependent oxidoreductase, precursor [Deinococcus
           deserti VCD115]
          Length = 370

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G    + DAA +     +++ G A  G R   D  +Y   + R ++ +   +V+QGEV  
Sbjct: 111 GREATMLDAAELARHEPSLRPGLAG-GLRVPDDAVVYAPVVARFLIERAGAEVVQGEVVA 169

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL--FN 184
            +        + + D   +    VV+  G     ++    L+   G +  +   SL   +
Sbjct: 170 LDG-----RGVRLTDGRTLSADLVVVAGGADASALLPELPLRPRKGHLLITERTSLKVNH 224

Query: 185 SFMKFDFDTGRLKTGTPAR 203
             ++  +      T T + 
Sbjct: 225 QLVELGYLKSAHGTETDSV 243


>gi|221639389|ref|YP_002525651.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|221160170|gb|ACM01150.1| Dihydrolipoyl dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 468

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGK 55
           M  +S+D+IVIG G  G   A   A+LG + A++       I    G +     +     
Sbjct: 5   MPAKSFDMIVIGAGPGGYVCAIRGAQLGLNVAIVERENLGGICLNWGCIPTKAMLRSAEV 64

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            HL+       GL             V+   +G A +     A            ++ + 
Sbjct: 65  YHLMHRAKEF-GLKAEGI--GYDLGAVVKRSRGVAKQLSSGVA-----------HLMKKN 110

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNS-MIRCSTVVLTTGTFLRGV 161
            + V+ G+       K  +S +     +  +    +VL TG   R +
Sbjct: 111 KITVVMGDAT--LAGKGRVS-VRTDKGTEELEAKAIVLATGARAREL 154


>gi|218663103|ref|ZP_03519033.1| glucose-inhibited division protein A [Rhizobium etli IE4771]
          Length = 268

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 27/174 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG---------GLGKGH 57
           DV+VIGGG AGC AA  A  +GA   ++       GS     + G            +  
Sbjct: 28  DVLVIGGGPAGCWAALEA--VGAKRGVVLVDKGYCGSSGATASAGTQIWYVPPDPSAREM 85

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRE-----------LYRLA 106
            +   +A+ G +   +  A +  +        A  G     D +            Y   
Sbjct: 86  AMASREAMGGYLSERSWMAPVLDKTYESVNRLADWGYPFPVDEKGEQQRISVQGPEYMRL 145

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSI---VMQDN--SMIRCSTVVLTTG 155
           ++R + +     +         T+   +        Q+     +R   VVL  G
Sbjct: 146 LRRRVKNAGVTILDHHPATHLLTDSGAVVGASGLRRQEGGRWTVRAGAVVLAAG 199


>gi|212223462|ref|YP_002306698.1| geranylgeranyl hydrogenase [Thermococcus onnurineus NA1]
 gi|212008419|gb|ACJ15801.1| geranylgeranyl hydrogenase [Thermococcus onnurineus NA1]
          Length = 396

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          M    YDV+V+G G AG   A   AK G S  LI  K++      C   I 
Sbjct: 1  MTEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGIS 51


>gi|167616760|ref|ZP_02385391.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia thailandensis
           Bt4]
          Length = 687

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHEVVLFEKNRE 423


>gi|167578619|ref|ZP_02371493.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia thailandensis
           TXDOH]
          Length = 687

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHEVVLFEKNRE 423


>gi|167648386|ref|YP_001686049.1| hypothetical protein Caul_4431 [Caulobacter sp. K31]
 gi|167350816|gb|ABZ73551.1| HI0933 family protein [Caulobacter sp. K31]
          Length = 409

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIGGG AG  AA + +  G S A+       + ++     + G G  +L    D   
Sbjct: 8  DVAVIGGGPAGLMAAEMLSAAGLSVAVF----ERMPTLGRKFLMAGRGGLNLTHSEDLE- 62

Query: 67 GLMGRVADAAGIQFRVLN 84
              R     G     L 
Sbjct: 63 ----RFVARYGGASERLR 76


>gi|149372517|ref|ZP_01891629.1| dihydrolipoyl dehydrogenanse [unidentified eubacterium SCB49]
 gi|149354560|gb|EDM43124.1| dihydrolipoyl dehydrogenanse [unidentified eubacterium SCB49]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 25/159 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-------SCNPAIGGLGKGHL 58
           YDV VIG G  G  AA   A+LG  TA+          +        C P+   L   H 
Sbjct: 4   YDVAVIGSGPGGYVAAIRCAQLGMKTAI----IEKYNVLGGTCLNVGCIPSKALLDSSHR 59

Query: 59  VRE-IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             + I   +     +     + F+ +  +K   V       D           ++S+ N+
Sbjct: 60  YEDAIKHFEDHGIEIPGEVKVNFKKMVERKASVVDQTTKGID----------FLMSKNNI 109

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           DV  G  +  +     I     Q    I     ++ TG+
Sbjct: 110 DVFTGVGSFVDATHIEIKGEETQT---IEAKHTIIATGS 145


>gi|159041062|ref|YP_001540314.1| electron-transferring-flavoprotein dehydrogenase [Caldivirga
          maquilingensis IC-167]
 gi|157919897|gb|ABW01324.1| Electron-transferring-flavoprotein dehydrogenase [Caldivirga
          maquilingensis IC-167]
          Length = 425

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +DVIV+G G  G  AA   A  G    ++
Sbjct: 1  MSQRFDVIVVGAGPGGLTAAQRLASGGFKVLVV 33


>gi|83716998|ref|YP_440059.1| FAD/FMN-binding oxidoreductase [Burkholderia thailandensis E264]
 gi|257143247|ref|ZP_05591509.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia thailandensis
           E264]
 gi|83650823|gb|ABC34887.1| oxidoreductase, FAD/FMN-binding [Burkholderia thailandensis E264]
          Length = 687

 Score = 40.7 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHEVVLFEKNRE 423


>gi|329121512|ref|ZP_08250136.1| FAD dependent oxidoreductase [Dialister micraerophilus DSM 19965]
 gi|327469427|gb|EGF14897.1| FAD dependent oxidoreductase [Dialister micraerophilus DSM 19965]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 76/465 (16%), Positives = 137/465 (29%), Gaps = 93/465 (20%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----------HKTSTIGS-------- 43
           ++  YDVI+IG G AG   A   AK   S  ++                           
Sbjct: 1   MSGIYDVIIIGAGPAGIFTALELAKSNFSVLIVEKGHDIRERVKINKDRNAPPSEKRKNI 60

Query: 44  --------------MSCNPAIGG-----LGKGHLVREIDALDGLMGRV--------ADAA 76
                         ++     GG     + KG L + I  +D +  +          D  
Sbjct: 61  VCGWGGAGAFSDGKLTLTTEYGGNLDDYMNKGELSKLISYVDSIYCKFGGANRKVYGDEF 120

Query: 77  GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE-----NLDVIQG-EVAGFNTE 130
                 L  K   A         R L        + +       N++V+   EV      
Sbjct: 121 QDDLHELKRKAASADLALIPARIRHLGTDVNADILANMRDALPSNVEVLCDTEVEDVLHP 180

Query: 131 KNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFD 190
           K   +  ++          +V   G    G           G    + +  +    ++ +
Sbjct: 181 KEDGTLGIIAGGKTYLSKYLVAAPG--REGAEWFNNSVHKMGIHTRANAVDIG---VRVE 235

Query: 191 FDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF-------------MTDKITNRQ 237
                 +  T    + K + + K+     D+R+  F               +     +  
Sbjct: 236 MPAETFEPITKICYESKLVYFSKS----FDDRVRTFCMNPYGFVVTENNGGLQTVNGHSF 291

Query: 238 IECGITRTNLE--THRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE-RNGHQIF 294
                  TN      +   +       Y   I +            + R G+ R+G +  
Sbjct: 292 AYKKSQNTNFAILVSKKFTKPFNEPIAYGKYIATLANMLGGG--PIVQRLGDLRDGRRST 349

Query: 295 LEPE--GLNTDVVYPNGISTALPEEIQHQFIRTIPG-LEKVNIIRPG--------YAIEY 343
            E    GL    + P+     L   + ++F++ I    E ++++ PG        Y +E 
Sbjct: 350 EERIKRGLVNPTM-PSATPGDLSLVLPYRFLKDIEEMFEALDVVAPGANSRHTLLYGVEV 408

Query: 344 DYINPK-ELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAG 386
            + + + EL   LET  I   F  G   G T G  +A+A G+V  
Sbjct: 409 KFYSSRPELSDKLET-AIPNFFAIGDGAGITRGLVQASAAGVVVA 452


>gi|315641492|ref|ZP_07896564.1| dihydrolipoamide dehydrogenase component E3 [Enterococcus
          italicus DSM 15952]
 gi|315482780|gb|EFU73304.1| dihydrolipoamide dehydrogenase component E3 [Enterococcus
          italicus DSM 15952]
          Length = 450

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          +YD+IVIG G  G  AA  AA+LG   A++      IG    ++ C P+
Sbjct: 3  NYDLIVIGAGPGGYVAAIKAAQLGKKVAVVEKN--KIGGTCLNVGCIPS 49


>gi|302924565|ref|XP_003053917.1| hypothetical protein NECHADRAFT_75548 [Nectria haematococca mpVI
           77-13-4]
 gi|256734858|gb|EEU48204.1| hypothetical protein NECHADRAFT_75548 [Nectria haematococca mpVI
           77-13-4]
          Length = 443

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 21/200 (10%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-----PAIGGLGK 55
           M   ++ VIV+GGG +G  AA      G    ++  + S +  +  +     P++  + +
Sbjct: 1   MGASTFKVIVVGGGPSGLTAAHALHLAGIDFVVLERRESVVEDVGASLVLAPPSLRVMHQ 60

Query: 56  GHLVREIDALDGLM--GRVADAAGIQFR------VLNVKKG-PAVRGPRTQADRELYRLA 106
             ++ E+ A+   +  G+  D  G +F+      +L    G   V   R Q  + LY   
Sbjct: 61  FGILEELLAIGREVEFGKSFDLQGREFKNSTKVQLLRTNHGSCPVAFHRAQLIQVLYDRL 120

Query: 107 MQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF--LRGVIHI 164
               I +++ + + +       T +N ++ +   D S+ + S V+   G     R ++  
Sbjct: 121 ---PIEAKKKVHLGKKLA-SIETNENGVT-VTSADGSVYQGSVVIGADGVHSKTRHLMRQ 175

Query: 165 GKLKIPAGRMGDSPSNSLFN 184
             L+    R  +       +
Sbjct: 176 LALQDDPSRDWEPEEPFASS 195


>gi|251780467|ref|ZP_04823387.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084782|gb|EES50672.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 406

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           VIVIG G AG  AA  AAK    T L          +     I G G+ ++    D  + 
Sbjct: 4   VIVIGAGPAGMMAAITAAKEHKVTLL-----DGNERLGKKLFITGKGRCNVTNAKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADR-ELYRLAMQREI 111
                         +    +   + F      K    RG R   ++D+       +   +
Sbjct: 59  FDYIPGNPHFLYSALYTFTNEDTMNFFSNEGIKLKVERGDRVFPESDKSSDIIRGLSNAL 118

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
              +    +  +V     + N I+ I + ++ +++    ++ TG
Sbjct: 119 SRTDVEIKLNSKVTDIKYKNNSITGIEINNDEILKADHYIIATG 162


>gi|240047640|ref|YP_002961028.1| Thioredoxin reductase [Mycoplasma conjunctivae HRC/581]
 gi|239985212|emb|CAT05225.1| Thioredoxin reductase [Mycoplasma conjunctivae]
          Length = 305

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVI+IG G AG   A  A++      ++
Sbjct: 1  MKTIYDVIIIGAGPAGLTTALYASRGNLKVLIL 33


>gi|197337042|ref|YP_002157977.1| NADH oxidase [Vibrio fischeri MJ11]
 gi|197314294|gb|ACH63743.1| NADH oxidase [Vibrio fischeri MJ11]
          Length = 676

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           ++IVIG G  G EAA   A+ G +  L+      IG
Sbjct: 533 NLIVIGAGLVGAEAALWMAQRGKNVTLVEGSDDIIG 568


>gi|188580497|ref|YP_001923942.1| glucose-methanol-choline oxidoreductase [Methylobacterium populi
          BJ001]
 gi|179343995|gb|ACB79407.1| glucose-methanol-choline oxidoreductase [Methylobacterium populi
          BJ001]
          Length = 518

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  +YDVIV G G  GC  A   A  G S  L+    S       +PAI   G       
Sbjct: 9  LETAYDVIVAGAGTGGCVVAGRLAAAGFSVLLVEAGPSDSA----DPAIADAG------- 57

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            A  GL+G   D  G  +       G A+  PR + 
Sbjct: 58 --AWVGLLGGAYDW-GYAYAPAAEVAGRAIAIPRGRV 91


>gi|190014656|ref|YP_001967420.1| LecH [Agrobacterium tumefaciens]
 gi|71849459|gb|AAZ50407.1| LecH [Agrobacterium tumefaciens]
          Length = 372

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  ++ D IVIGGG  G  AA   A+ G    ++
Sbjct: 1  MNAKAIDTIVIGGGLHGLSAALNLARAGKRVVIL 34


>gi|219848041|ref|YP_002462474.1| dihydrolipoamide dehydrogenase [Chloroflexus aggregans DSM 9485]
 gi|219542300|gb|ACL24038.1| dihydrolipoamide dehydrogenase [Chloroflexus aggregans DSM 9485]
          Length = 470

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+G G  G  AA  AA+LG  TA++           IG +     +     
Sbjct: 1  MSEQVYDLVVLGSGPGGYVAAIRAAQLGMKTAIVEVNALGGVCLNIGCIPTKALLHSADL 60

Query: 56 GHLVREIDALD 66
             V+E     
Sbjct: 61 LEEVKEAKRFG 71


>gi|116750563|ref|YP_847250.1| NADH:flavin oxidoreductase/NADH oxidase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699627|gb|ABK18815.1| NADH:flavin oxidoreductase/NADH oxidase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 645

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+G G AGCEAA VA   G    ++  K   +G    N A     KG   + ++   G
Sbjct: 380 VVVVGAGPAGCEAARVARLRGHEVIVLE-KQDRVGG-QFNLAALPPKKGDFGKLVEFYAG 437

Query: 68  LMGRV 72
            + R+
Sbjct: 438 ELPRL 442


>gi|110596851|ref|ZP_01385141.1| Amine oxidase:Rieske (2Fe-2S) region:FAD dependent oxidoreductase
          [Chlorobium ferrooxidans DSM 13031]
 gi|110341538|gb|EAT59998.1| Amine oxidase:Rieske (2Fe-2S) region:FAD dependent oxidoreductase
          [Chlorobium ferrooxidans DSM 13031]
          Length = 643

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+VIGGG AG  +A   A+ G    LI
Sbjct: 58 VVVIGGGLAGISSALELARKGFEVTLI 84


>gi|110679463|ref|YP_682470.1| oxidoreductase, putative [Roseobacter denitrificans OCh 114]
 gi|109455579|gb|ABG31784.1| oxidoreductase, putative [Roseobacter denitrificans OCh 114]
          Length = 681

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+++G G AG EAA VAA+ G    +   +  
Sbjct: 389 VVIVGAGPAGLEAARVAAERGHVVTVFEAQAD 420


>gi|329767140|ref|ZP_08258668.1| thioredoxin-disulfide reductase [Gemella haemolysans M341]
 gi|328837865|gb|EGF87490.1| thioredoxin-disulfide reductase [Gemella haemolysans M341]
          Length = 307

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  + YD+I++G G AG  A+  A++   S  ++  K
Sbjct: 1  MSEKIYDLIIVGAGPAGMTASIYASRANMSVLMLERK 37


>gi|292670797|ref|ZP_06604223.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas noxia
           ATCC 43541]
 gi|292647418|gb|EFF65390.1| pyridine nucleotide-disulfide oxidoreductase [Selenomonas noxia
           ATCC 43541]
          Length = 442

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 136/417 (32%), Gaps = 65/417 (15%)

Query: 26  KLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85
           + G    L       +        I G G+ ++    D  D     +        R LN 
Sbjct: 22  ECGGHVLL----LEKMPRAGRKMMITGKGRCNVTSADDIPD-----IIKNTVGNGRFLNS 72

Query: 86  ---------------KKGPAVRGPRT-----QADR-ELYRLAMQREILSQENLDVI-QGE 123
                            G  ++  R      Q+DR      A+ R +  Q N+++     
Sbjct: 73  SLRAFDNVDVMTFFESLGVPLKIERGNRVFPQSDRASDVVNAILRRLHDQ-NVEIRTNAA 131

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
           V+      + +  + ++D S I    V+L  G                 R        +F
Sbjct: 132 VSELLAADHSVRGVRLKDGSDIEADAVILAVGGASYPATGSAGDGYTLARGAGHTVVPIF 191

Query: 184 NSFMKFDFDTGRLKT--GTPARLDGKTIIW--DKTEKQFADERLIPFSFMTDKITNRQIE 239
            + +    +   +K   G   R    T+ +   K +++F +     F  +T  I  +   
Sbjct: 192 PALVPLVTEEAWVKELQGLSLRNVRATLYYAGKKAQEEFGEMLFTHFG-VTGPIILQLSR 250

Query: 240 CGITRTNLETHRIIMENIKHSAIYSG--DIKSYGPRYCPSIEDKIVRFGERNGHQIFLE- 296
           C           ++        +        +Y    C  +E    ++  +      ++ 
Sbjct: 251 CA--------SELLSMGADTLELRLNLKPALTYEVL-CERVERDFAKYERKQLRSGMIDL 301

Query: 297 -PEGLNTDVVYPNGIS-TA----LPEEIQHQFIRTIPGLEKVNI-IRP-GYAIEYD-YIN 347
            P+ L T V+   G+S T+    +  + + + +  +  L    I  RP   AI     ++
Sbjct: 302 LPKRLITPVLNTAGLSPTSSCGQISTKERKRLVHVLQALPMTVIGTRPIAEAIVTAGGVD 361

Query: 348 PKELFP-TLETKKISGLFLAGQINGTTGYE------EAAAQGLVAGINSARKSNKLD 397
            +E+ P T+E+K +S L+ AG++     Y        A + G  AG +S       +
Sbjct: 362 TREINPRTMESKIVSNLYFAGELIDVDAYTGGYNLQAAFSTGHAAGCHSVSNLEGRE 418


>gi|241890038|ref|ZP_04777336.1| thioredoxin-disulfide reductase [Gemella haemolysans ATCC 10379]
 gi|241863660|gb|EER68044.1| thioredoxin-disulfide reductase [Gemella haemolysans ATCC 10379]
          Length = 307

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  + YD+I++G G AG  A+  A++   S  ++  K
Sbjct: 1  MSEKIYDLIIVGAGPAGMTASIYASRANMSVLMLERK 37


>gi|229005116|ref|ZP_04162839.1| phytoene dehydrogenase enzyme [Bacillus mycoides Rock1-4]
 gi|228756091|gb|EEM05413.1| phytoene dehydrogenase enzyme [Bacillus mycoides Rock1-4]
          Length = 427

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +++V +IGGG AG  A+   A+ G    ++
Sbjct: 2  ENFNVAIIGGGLAGLTASIFLAREGEKVVVL 32


>gi|229584735|ref|YP_002843237.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|228019785|gb|ACP55192.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 931

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 30/167 (17%)

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS--------L 531
           S+  T  +L    I+  +    +     +      I  L  I P   K S         L
Sbjct: 648 SIKGTPVDLFKDIINMDERKIVKIVLRSILRSPLYIATLKEIQPSFGKISKINTKEDKFL 707

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP-- 589
           + E L+          R +   K+++  + ++I     Y+    L  E     + ++P  
Sbjct: 708 IKEALRQTIKRYFSIKRTLEFIKKVREGKIKMI-----YTENAGLLREAIFAHAQIRPWL 762

Query: 590 ----FNLLQA-----------SKIEGMTPAALNLLLIYIKKNTVKLN 621
                 + QA           S+I G++  +L   L  +++N  K  
Sbjct: 763 SDLNLTIYQALKGGAYTVNELSEILGISAKSLENKLKQLRRNNNKYK 809


>gi|307152917|ref|YP_003888301.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 7822]
 gi|306983145|gb|ADN15026.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Cyanothece sp. PCC 7822]
          Length = 575

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 19/68 (27%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EI 62
           +DV++IGGG AGC AA    +L       T              +  + K H +R   +
Sbjct: 3  QHDVVIIGGGLAGCRAALEIKRL-------TPNID----------VAVIAKTHPIRSHSV 45

Query: 63 DALDGLMG 70
           A  G+  
Sbjct: 46 AAQGGIAA 53


>gi|56695087|ref|YP_165434.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Ruegeria pomeroyi DSS-3]
 gi|56676824|gb|AAV93490.1| oxidoreductase, FMN-binding/pyridine nucleotide-disulfide
           oxidoreductase [Ruegeria pomeroyi DSS-3]
          Length = 659

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+GGG AG E A VAA+ G    L
Sbjct: 387 VLVVGGGPAGLECARVAAERGHRVIL 412


>gi|13474869|ref|NP_106439.1| hypothetical protein mlr5845 [Mesorhizobium loti MAFF303099]
 gi|14025625|dbj|BAB52225.1| mlr5845 [Mesorhizobium loti MAFF303099]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 5/209 (2%)

Query: 60  REIDALDG--LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR--ELYRLAMQREILSQE 115
            E    +G  ++   A+    +F  L+ +   A    RT          L + R+ L  +
Sbjct: 143 HEAQIAEGADIVLEDAEQLTQRFAWLSTEGISAGAYGRTGEGWFDAHAMLTLFRKALRGK 202

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           N+D +   V G   + + ++ + + +   I   TV+   G     V  +  L +P     
Sbjct: 203 NVDFMTASVIGIERQGHRVTGVRLDNGETIEAGTVLNAAGPNAGKVAALAGLALPVEP-R 261

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
                         D       +G   R +G   +    E +  D    P  F  D    
Sbjct: 262 KRNVFVFEAREKYADMPLLVDPSGIYVRPEGPVYLTGGAEPEEGDGPADPQDFEVDWPLF 321

Query: 236 RQIECGITRTNLETHRIIMENIKHSAIYS 264
            ++   +  T +     I      +  Y 
Sbjct: 322 EEVIWPVLATRIPAFEAIKPTRAWAGHYD 350


>gi|85714576|ref|ZP_01045563.1| L-aspartate oxidase [Nitrobacter sp. Nb-311A]
 gi|85698461|gb|EAQ36331.1| L-aspartate oxidase [Nitrobacter sp. Nb-311A]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 57/202 (28%), Gaps = 41/202 (20%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG---------HLV 59
           +VIGGG AG   A   A       L++     +   S   A GG+  G         HL 
Sbjct: 12  VVIGGGLAGLMTALALAPR--PVLLLSSAPLGL-ETSSILAQGGIAAGIGADDNPSLHLA 68

Query: 60  REIDALDGLM-----------GRVADAAGIQFRVL--NVKKGPAVRGPRTQADRELYR-- 104
             + A DGL               A    +Q  V      KG    G      R      
Sbjct: 69  DTLAAGDGLCDERVAAAILAAAPAAIERLLQLGVAFDRDAKGDIALGLEAAHSRRRIVHA 128

Query: 105 ----------LAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNS---MIRCSTV 150
                       + R++    ++ V +         E N +  +V Q            +
Sbjct: 129 GGDASGHDIIRTLARKVYETPSITVCEPTRAQRLIVEDNAVRGVVCQTGRDFVTFVTDHI 188

Query: 151 VLTTGTFLRGVIHIGKLKIPAG 172
           V+ TG      +H        G
Sbjct: 189 VIATGGIGGLFLHGTNPAGSCG 210


>gi|89893364|ref|YP_516851.1| putative fumarate reductase flavoprotein subunit
           [Desulfitobacterium hafniense Y51]
 gi|219666641|ref|YP_002457076.1| FMN-binding domain protein [Desulfitobacterium hafniense DCB-2]
 gi|89332812|dbj|BAE82407.1| putative fumarate reductase flavoprotein subunit
           [Desulfitobacterium hafniense Y51]
 gi|219536901|gb|ACL18640.1| FMN-binding domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 657

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           I ++YD  V+VIG G +G  AA  A + GA T LI    +  G       +G +G
Sbjct: 158 IVKTYDYEVVVIGAGTSGTFAACSAVEEGAKTVLIEKSGADFGGSGIRDTLGAIG 212


>gi|310790757|gb|EFQ26290.1| FAD binding domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 674

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 27/153 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG   AA  ++ G    +I  +              G   G   + I+    
Sbjct: 57  VCVVGAGPAGLMLAANLSRFGIKVEVIDDRADQ--------TPVGRADGLQPKTIETF-- 106

Query: 68  LMGRVADAAGIQ-FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI------ 120
              R+AD   ++  RV ++         R+ AD  L+RL   RE+     +DV+      
Sbjct: 107 RQMRLADPLLLRGVRVYDISF------WRSTADEPLHRL--GREVHYPPVIDVLDPYILL 158

Query: 121 --QGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
             QG V G   +      + ++ N+     +V 
Sbjct: 159 VHQGMVEGIFIDDLKKRGVEVRRNTAFESYSVP 191


>gi|301167419|emb|CBW27001.1| fumarate reductase [Bacteriovorax marinus SJ]
          Length = 643

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 56/222 (25%), Gaps = 46/222 (20%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--------THKTSTIGSMSCNPAIGGLG 54
            R Y VIV+G G AG  AAA  ++LG   +           H  +  G ++        G
Sbjct: 35  KRKYKVIVVGTGLAGASAAATLSELGYEVSTFCIQDSPRRAHSIAAQGGVNAAKNYPNDG 94

Query: 55  KGH-------------LVREIDALDG--LMGRVADAAGIQFRVL---------NVKKGPA 90
                             RE +      +   + D    Q             N   G A
Sbjct: 95  DSIWRLFYDTIKGGDYRAREANVYRLAQVANNIIDQCAAQGVPFAREYGGTLSNRSFGGA 154

Query: 91  VRG----PRTQADREL----YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
                   R Q  ++L    Y   M+     +      +  V            I+ ++ 
Sbjct: 155 QVSRTFYARGQTGQQLLLGAYSALMKEVGKGKVKSYTRREMV-ELVIVNGKARGIITRNV 213

Query: 143 S-----MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
                       V+L TG +              G       
Sbjct: 214 ITGEYEKFSADAVLLCTGGYGNTYFLSSNAMASNGSAAWKAY 255


>gi|299537780|ref|ZP_07051069.1| dihydrolipoamide dehydrogenase [Lysinibacillus fusiformis ZC1]
 gi|298726759|gb|EFI67345.1| dihydrolipoamide dehydrogenase [Lysinibacillus fusiformis ZC1]
          Length = 475

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+++GGG  G  AA  AA+LG  TA++
Sbjct: 1  MAQNYDVVILGGGTGGYVAAIRAAQLGLKTAIV 33


>gi|296168064|ref|ZP_06850130.1| dihydrolipoyl dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295896871|gb|EFG76499.1| dihydrolipoyl dehydrogenase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 466

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M    +DV+V+G G  G  AA  AA+LG +TA++  K
Sbjct: 1  MAVTHFDVVVLGAGPGGYVAAIRAAQLGLNTAIVEPK 37


>gi|227827532|ref|YP_002829312.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|227830219|ref|YP_002831999.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|229579034|ref|YP_002837432.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619689|ref|YP_002914515.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997642|ref|YP_003419409.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|227456667|gb|ACP35354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227459328|gb|ACP38014.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228009748|gb|ACP45510.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380759|gb|ACR41847.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284445537|gb|ADB87039.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|323474583|gb|ADX85189.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323477315|gb|ADX82553.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 931

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 30/167 (17%)

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS--------L 531
           S+  T  +L    I+  +    +     +      I  L  I P   K S         L
Sbjct: 648 SIKGTPVDLFKDIINMDERKIVKIVLRSILRSPLYIATLKEIQPSFGKISKINTKEDKFL 707

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP-- 589
           + E L+          R +   K+++  + ++I     Y+    L  E     + ++P  
Sbjct: 708 IKEALRQTIKRYFSIKRTLEFIKKVREGKIKMI-----YTENAGLLREAIFAHAQIRPWL 762

Query: 590 ----FNLLQA-----------SKIEGMTPAALNLLLIYIKKNTVKLN 621
                 + QA           S+I G++  +L   L  +++N  K  
Sbjct: 763 SDLNLTIYQALKGGAYTVNELSEILGISAKSLENKLKQLRRNNNKYK 809


>gi|212640348|ref|YP_002316868.1| thioredoxin reductase [Anoxybacillus flavithermus WK1]
 gi|212561828|gb|ACJ34883.1| Thioredoxin reductase [Anoxybacillus flavithermus WK1]
          Length = 327

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  AA   ++   ST ++
Sbjct: 19 YDVIIIGAGPAGMTAAVYTSRANLSTLML 47


>gi|229582215|ref|YP_002840614.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012931|gb|ACP48692.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 931

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 30/167 (17%)

Query: 480 SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS--------L 531
           S+  T  +L    I+  +    +     +      I  L  I P   K S         L
Sbjct: 648 SIKGTPVDLFKDIINMDERKIVKIVLRSILRSPLYIATLKEIQPSFGKISKINTKEDKFL 707

Query: 532 VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKP-- 589
           + E L+          R +   K+++  + ++I     Y+    L  E     + ++P  
Sbjct: 708 IKEALRQTIKRYFSIKRTLEFIKKVREGKIKMI-----YTENAGLLREAIFAHAQIRPWL 762

Query: 590 ----FNLLQA-----------SKIEGMTPAALNLLLIYIKKNTVKLN 621
                 + QA           S+I G++  +L   L  +++N  K  
Sbjct: 763 SDLNLTIYQALKGGAYTVNELSEILGISAKSLENKLKQLRRNNNKYK 809


>gi|160883819|ref|ZP_02064822.1| hypothetical protein BACOVA_01792 [Bacteroides ovatus ATCC 8483]
 gi|156110904|gb|EDO12649.1| hypothetical protein BACOVA_01792 [Bacteroides ovatus ATCC 8483]
          Length = 624

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 10/172 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + S DV++IGGG +G  A   +A++ A T ++  +T  +G M  +  +     G+     
Sbjct: 23  DDSVDVLIIGGGASGVTAGIQSARMEAVTLIVE-ETEWLGGMLTSAGVS-AVDGNYDLPA 80

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
                  G +AD  G     L+  K           +  +        + ++ENL V   
Sbjct: 81  GLFGEFRGHLADYYGG----LDSLKT--GWVSSVLFEPSVGNKIFHEMVNAEENLKVWHN 134

Query: 122 GEVAGFNTEKNI-ISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             +     E +  I+ I MQD+++ + S  +L  GT L  +  +  +K   G
Sbjct: 135 ATLVKLERENDSWIAQIQMQDHTIKKVSAKILIDGTELGDIAKMCGVKYDIG 186


>gi|332671927|ref|YP_004454935.1| response regulator receiver protein [Cellulomonas fimi ATCC 484]
 gi|332340965|gb|AEE47548.1| response regulator receiver protein [Cellulomonas fimi ATCC 484]
          Length = 563

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++V+GGG AG  AA   A  G  TAL+
Sbjct: 238 YDLVVVGGGPAGLSAALYGASEGLRTALV 266


>gi|332295313|ref|YP_004437236.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
 gi|332178416|gb|AEE14105.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
          Length = 861

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +D +VIGGG AG E++ +   +G    L+
Sbjct: 5  KKFDALVIGGGIAGMESSILLGDMGFKVLLV 35


>gi|323439451|gb|EGA97173.1| mercury(II) reductase [Staphylococcus aureus O11]
          Length = 440

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 23/216 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           ++YD+IVIG G AG   A  AA  G   A+I       G    N  +G +    LV    
Sbjct: 2   KTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSPKMYGGTCIN--VGCIASKTLVH--- 56

Query: 64  ALDGLMGRVADAAGIQF-RVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
             DGL G+  + +  +   V+N    K   +    +  D   ++   +       NL   
Sbjct: 57  --DGLEGKTFEESYNRKNDVVNALNNKNYHLLADDSNIDVLDFKAQFKSNTEV--NLLNQ 112

Query: 121 QGEVAGFNTEKNII-----SSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
            G++A   T  +II     +S++     + +   V  +TG           + +  G + 
Sbjct: 113 HGDIADSITAPHIIINTGATSVIPNIKGLDQAKHVFDSTGLLNISYQPKHLVIVGGGYI- 171

Query: 176 DSPSNSLFNSFMKFDFDTGRLKTGTP--ARLDGKTI 209
              +    + F         L+ G     R D   +
Sbjct: 172 ---ALEFASMFANLGSKVTVLERGESFMPREDQDVV 204


>gi|307826105|ref|ZP_07656317.1| FAD-dependent pyridine nucleotide-Disulfide oxidoreductase
          [Methylobacter tundripaludum SV96]
 gi|307732843|gb|EFO03708.1| FAD-dependent pyridine nucleotide-Disulfide oxidoreductase
          [Methylobacter tundripaludum SV96]
          Length = 527

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   +DVI++G G AG  AA    + G    ++
Sbjct: 1  MTPDFDVIIVGSGPAGVSAAFPLVEAGLKVLMV 33


>gi|308049262|ref|YP_003912828.1| flavocytochrome C [Ferrimonas balearica DSM 9799]
 gi|307631452|gb|ADN75754.1| flavocytochrome c [Ferrimonas balearica DSM 9799]
          Length = 500

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI-GGLGKGHLVRE 61
           +  YDV++IG G AG  AA  A KLGA   ++      +G    N  +  G         
Sbjct: 35  HSEYDVVIIGSGFAGLAAAVEAKKLGAKRVVV---FEKMGVYGGNSTLNAGQACFAGTDL 91

Query: 62  IDALDGLMGRVADAAGIQ-FRVLNVKKGPAVRG-PRTQADRELY 103
              L      + D A +     L   +G A     R  A+   Y
Sbjct: 92  QKKLG-----IEDNANLMVLDQLKAGRGLASEALLRASAELGPY 130


>gi|299768985|ref|YP_003731011.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter sp.
          DR1]
 gi|298699073|gb|ADI89638.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter sp.
          DR1]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|296277104|ref|ZP_06859611.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus MR1]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|293610899|ref|ZP_06693198.1| succinate dehydrogenase [Acinetobacter sp. SH024]
 gi|292826551|gb|EFF84917.1| succinate dehydrogenase [Acinetobacter sp. SH024]
 gi|325123216|gb|ADY82739.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|282916106|ref|ZP_06323869.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus D139]
 gi|283769927|ref|ZP_06342819.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus H19]
 gi|282320054|gb|EFB50401.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus D139]
 gi|283460074|gb|EFC07164.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus H19]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|262281276|ref|ZP_06059058.1| succinate dehydrogenase/fumarate reductase [Acinetobacter
          calcoaceticus RUH2202]
 gi|262257507|gb|EEY76243.1| succinate dehydrogenase/fumarate reductase [Acinetobacter
          calcoaceticus RUH2202]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|260549003|ref|ZP_05823225.1| succinate dehydrogenase/fumarate reductase [Acinetobacter sp.
          RUH2624]
 gi|260408171|gb|EEX01642.1| succinate dehydrogenase/fumarate reductase [Acinetobacter sp.
          RUH2624]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|255009755|ref|ZP_05281881.1| hypothetical protein Bfra3_11511 [Bacteroides fragilis 3_1_12]
          Length = 529

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 31/178 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVVERGKDVRERKKDLAQISREHRVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQ--REI 111
           G G         DG +   +   G   ++LNV             D   +    +  R I
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNV-FCQHGASTAILVDAHPHIGTDKLPRVI 197

Query: 112 LSQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
            +  +  +        +  +     EK  +  I  Q         V+L TG   R V 
Sbjct: 198 ENMRHTIIECGGEVHFETRMDALIIEKGEVKGIETQTGKTFLGP-VILATGHSARDVY 254


>gi|253732787|ref|ZP_04866952.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|253729152|gb|EES97881.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          TCH130]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|284037309|ref|YP_003387239.1| hypothetical protein Slin_2420 [Spirosoma linguale DSM 74]
 gi|283816602|gb|ADB38440.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
          Length = 764

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I    D++V+GGG +G   A  AA+ G    L+
Sbjct: 15 IRHEADLLVVGGGLSGVCCALTAARAGIRVLLV 47


>gi|229072604|ref|ZP_04205806.1| Thioredoxin reductase [Bacillus cereus F65185]
 gi|228710580|gb|EEL62553.1| Thioredoxin reductase [Bacillus cereus F65185]
          Length = 321

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 7  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 38


>gi|223039051|ref|ZP_03609342.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
 gi|222879690|gb|EEF14780.1| flavoCytochrome c flavin subunit [Campylobacter rectus RM3267]
          Length = 505

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          +  +DV+V+G G AG  A   A   GA T +       +  +  N AI G  
Sbjct: 21 DEEWDVLVVGSGFAGSAATCQALDEGAKTLM----IDKMPVLGGNSAINGGA 68


>gi|254445461|ref|ZP_05058937.1| FAD dependent oxidoreductase, putative [Verrucomicrobiae
          bacterium DG1235]
 gi|198259769|gb|EDY84077.1| FAD dependent oxidoreductase, putative [Verrucomicrobiae
          bacterium DG1235]
          Length = 468

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +++ YDV +IG G +G  A   AA  G    ++              A GGL   +    
Sbjct: 1  MSQHYDVAIIGAGMSGLSAGIRAAHFGKRAIILEQH----------NAPGGLNSFYAKEG 50

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
               GL          + R +  K    +R  R   D
Sbjct: 51 RKYDVGLHAMTNYVPASERRAIFNKLLRQLRIDRADLD 88


>gi|169632622|ref|YP_001706358.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii SDF]
 gi|169151414|emb|CAP00145.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|169794944|ref|YP_001712737.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii AYE]
 gi|184159278|ref|YP_001847617.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii ACICU]
 gi|213157651|ref|YP_002320449.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii AB0057]
 gi|215482491|ref|YP_002324677.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii AB307-0294]
 gi|239502287|ref|ZP_04661597.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii AB900]
 gi|260557310|ref|ZP_05829526.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii ATCC 19606]
 gi|301346637|ref|ZP_07227378.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii AB056]
 gi|301512215|ref|ZP_07237452.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii AB058]
 gi|301595938|ref|ZP_07240946.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii AB059]
 gi|332854233|ref|ZP_08435253.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6013150]
 gi|332866324|ref|ZP_08436929.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6013113]
 gi|332872539|ref|ZP_08440508.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6014059]
 gi|169147871|emb|CAM85734.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii AYE]
 gi|183210872|gb|ACC58270.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Acinetobacter baumannii ACICU]
 gi|193078179|gb|ABO13126.2| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii ATCC 17978]
 gi|213056811|gb|ACJ41713.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii AB0057]
 gi|213988800|gb|ACJ59099.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii AB307-0294]
 gi|260409416|gb|EEX02718.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii ATCC 19606]
 gi|322509191|gb|ADX04645.1| sdhA [Acinetobacter baumannii 1656-2]
 gi|323519219|gb|ADX93600.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter
          baumannii TCDC-AB0715]
 gi|332728158|gb|EGJ59546.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6013150]
 gi|332734672|gb|EGJ65776.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6013113]
 gi|332739225|gb|EGJ70083.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          baumannii 6014059]
          Length = 611

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|149912784|ref|ZP_01901318.1| glutathione-disulfide reductase [Roseobacter sp. AzwK-3b]
 gi|149813190|gb|EDM73016.1| glutathione-disulfide reductase [Roseobacter sp. AzwK-3b]
          Length = 451

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 30/162 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV 59
           +   YD+ VIGGG  G  AA VAA+ GA  AL        T     C P           
Sbjct: 1   MTFDYDLFVIGGGSGGVRAARVAAQGGAKVALAEEDRYGGTCVQRGCVP----------K 50

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG---PAVRG-PRTQADRELYRLAMQREILSQE 115
           + +       G++ADA    + V     G   PA RG    + DR      + R +L+  
Sbjct: 51  KLMVFASEYPGQIADAQSYGWTV--HSGGFDWPAFRGKLHAELDRLE---GVYRRLLANS 105

Query: 116 NLDVI--QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            ++    +  VA  +T       + +          +++ TG
Sbjct: 106 GVETFDTRASVADAHT-------VELASGGTKTAKHILIATG 140


>gi|94499723|ref|ZP_01306260.1| glutathione reductase [Oceanobacter sp. RED65]
 gi|94428477|gb|EAT13450.1| glutathione reductase [Oceanobacter sp. RED65]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YD+ VIG G AG  A+ +AA LG   A+    
Sbjct: 3  QYDLFVIGAGSAGVRASRMAANLGKKVAVAESN 35


>gi|119182216|ref|XP_001242253.1| hypothetical protein CIMG_06149 [Coccidioides immitis RS]
          Length = 485

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           D+++IG G AGC  A      G S  L+         I      P    A+  LG  H +
Sbjct: 36  DIVIIGAGIAGCSLAVALGNQGRSVLLLEKSLKEPDRIVGELLQPGGVLALEKLGLRHCL 95

Query: 60  REIDALDGLMGRVADAAG---IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +IDA+  L   V        I F + + +K    R          + + ++   +S  N
Sbjct: 96  EDIDAVKVLGYNVIYHGAPVRIDFPMDSNEKLFEGRS----FHHGRFIMKLREAAMSTPN 151

Query: 117 LDVIQGEVAGFN--TEKNIISSIVMQDNSM---IRCSTVVLTTGTFLRGV 161
           + V++ +       T    +  +    N           V+  G      
Sbjct: 152 VTVVETKAVSLVKSTHGEGVLGVECLTNGKKDFFFAPLTVVADGYNSAFR 201


>gi|85374429|ref|YP_458491.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Erythrobacter litoralis HTCC2594]
 gi|84787512|gb|ABC63694.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide
          dehydrogenase [Erythrobacter litoralis HTCC2594]
          Length = 472

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           YDV+VIG G  G  AA  AA+LG  TA 
Sbjct: 7  DYDVLVIGAGPGGYVAAIRAAQLGLKTAC 35


>gi|82750469|ref|YP_416210.1| thioredoxin reductase [Staphylococcus aureus RF122]
 gi|82656000|emb|CAI80405.1| thioredoxin reductase [Staphylococcus aureus RF122]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|50085918|ref|YP_047428.1| succinate dehydrogenase flavoprotein subunit [Acinetobacter sp.
          ADP1]
 gi|49531894|emb|CAG69606.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter sp.
          ADP1]
          Length = 632

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLKVAVLT 47


>gi|89097206|ref|ZP_01170096.1| hypothetical protein B14911_16545 [Bacillus sp. NRRL B-14911]
 gi|89088029|gb|EAR67140.1| hypothetical protein B14911_16545 [Bacillus sp. NRRL B-14911]
          Length = 428

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D ++IGGG AG  +AAV  K G  T L+
Sbjct: 1  MTQNHWDAVIIGGGLAGLVSAAVLGKAGMKTLLL 34


>gi|15923754|ref|NP_371288.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926441|ref|NP_373974.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus N315]
 gi|21282455|ref|NP_645543.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus MW2]
 gi|49485636|ref|YP_042857.1| putative thioredoxin reductase [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57650105|ref|YP_185703.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus COL]
 gi|87161001|ref|YP_493449.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88194546|ref|YP_499342.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|148267224|ref|YP_001246167.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393273|ref|YP_001315948.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus JH1]
 gi|151220944|ref|YP_001331766.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156979092|ref|YP_001441351.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509033|ref|YP_001574692.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|221141246|ref|ZP_03565739.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|253314857|ref|ZP_04838070.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253731393|ref|ZP_04865558.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|255005555|ref|ZP_05144156.2| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257424884|ref|ZP_05601311.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257427552|ref|ZP_05603951.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430183|ref|ZP_05606567.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257432884|ref|ZP_05609244.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257435788|ref|ZP_05611836.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M876]
 gi|257794915|ref|ZP_05643894.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9781]
 gi|258418231|ref|ZP_05682496.1| thioredoxine reductase [Staphylococcus aureus A9763]
 gi|258421528|ref|ZP_05684453.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9719]
 gi|258423413|ref|ZP_05686304.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9635]
 gi|258430723|ref|ZP_05688435.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9299]
 gi|258440944|ref|ZP_05690779.1| thioredoxine reductase [Staphylococcus aureus A8115]
 gi|258445774|ref|ZP_05693951.1| thioredoxine reductase [Staphylococcus aureus A6300]
 gi|258449585|ref|ZP_05697687.1| thioredoxin-disulfide reductase [Staphylococcus aureus A6224]
 gi|258452972|ref|ZP_05700966.1| thioredoxin-disulfide reductase [Staphylococcus aureus A5948]
 gi|258453985|ref|ZP_05701957.1| thioredoxine reductase [Staphylococcus aureus A5937]
 gi|262049548|ref|ZP_06022418.1| thioredoxine reductase [Staphylococcus aureus D30]
 gi|262052696|ref|ZP_06024887.1| thioredoxine reductase [Staphylococcus aureus 930918-3]
 gi|269202385|ref|YP_003281654.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282895060|ref|ZP_06303281.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8117]
 gi|282910410|ref|ZP_06318214.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282913605|ref|ZP_06321394.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M899]
 gi|282918557|ref|ZP_06326294.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C427]
 gi|282922061|ref|ZP_06329758.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9765]
 gi|282923523|ref|ZP_06331203.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C101]
 gi|282926630|ref|ZP_06334260.1| thioredoxin-disulfide reductase [Staphylococcus aureus A10102]
 gi|284023786|ref|ZP_06378184.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 132]
 gi|293500649|ref|ZP_06666500.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|293509597|ref|ZP_06668308.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M809]
 gi|293524183|ref|ZP_06670870.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M1015]
 gi|294850492|ref|ZP_06791221.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9754]
 gi|295406488|ref|ZP_06816294.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8819]
 gi|297208509|ref|ZP_06924938.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ATCC 51811]
 gi|297245214|ref|ZP_06929088.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8796]
 gi|300912601|ref|ZP_07130044.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus TCH70]
 gi|304381615|ref|ZP_07364265.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|54039788|sp|P66011|TRXB_STAAW RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|54039789|sp|P99101|TRXB_STAAN RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|54042095|sp|P66010|TRXB_STAAM RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|81649736|sp|Q6GB66|TRXB_STAAS RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|81694972|sp|Q5HHQ4|TRXB_STAAC RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|6434033|emb|CAB60740.1| thioredoxine reductase [Staphylococcus aureus]
 gi|13700655|dbj|BAB41952.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus N315]
 gi|14246533|dbj|BAB56926.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21203892|dbj|BAB94591.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus MW2]
 gi|32468851|emb|CAA11546.2| thioredoxin reductase [Staphylococcus aureus]
 gi|49244079|emb|CAG42505.1| putative thioredoxin reductase [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57284291|gb|AAW36385.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus COL]
 gi|87126975|gb|ABD21489.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87202104|gb|ABD29914.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|147740293|gb|ABQ48591.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945725|gb|ABR51661.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus JH1]
 gi|150373744|dbj|BAF67004.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|156721227|dbj|BAF77644.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367842|gb|ABX28813.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253724874|gb|EES93603.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257272454|gb|EEV04577.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257275745|gb|EEV07218.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257279380|gb|EEV09981.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257282299|gb|EEV12434.1| thioredoxine reductase [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257284979|gb|EEV15098.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M876]
 gi|257788887|gb|EEV27227.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9781]
 gi|257839024|gb|EEV63503.1| thioredoxine reductase [Staphylococcus aureus A9763]
 gi|257842454|gb|EEV66878.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9719]
 gi|257846474|gb|EEV70497.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9635]
 gi|257849395|gb|EEV73365.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9299]
 gi|257852458|gb|EEV76379.1| thioredoxine reductase [Staphylococcus aureus A8115]
 gi|257855350|gb|EEV78288.1| thioredoxine reductase [Staphylococcus aureus A6300]
 gi|257857093|gb|EEV79992.1| thioredoxin-disulfide reductase [Staphylococcus aureus A6224]
 gi|257859483|gb|EEV82337.1| thioredoxin-disulfide reductase [Staphylococcus aureus A5948]
 gi|257863850|gb|EEV86606.1| thioredoxine reductase [Staphylococcus aureus A5937]
 gi|259159393|gb|EEW44446.1| thioredoxine reductase [Staphylococcus aureus 930918-3]
 gi|259162384|gb|EEW46956.1| thioredoxine reductase [Staphylococcus aureus D30]
 gi|262074675|gb|ACY10648.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ED98]
 gi|269940341|emb|CBI48718.1| putative thioredoxin reductase [Staphylococcus aureus subsp.
          aureus TW20]
 gi|282314391|gb|EFB44781.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C101]
 gi|282317691|gb|EFB48063.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C427]
 gi|282322637|gb|EFB52959.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M899]
 gi|282325802|gb|EFB56110.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282591523|gb|EFB96595.1| thioredoxin-disulfide reductase [Staphylococcus aureus A10102]
 gi|282593719|gb|EFB98711.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9765]
 gi|282762556|gb|EFC02695.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8117]
 gi|285816466|gb|ADC36953.1| Thioredoxin reductase [Staphylococcus aureus 04-02981]
 gi|290921146|gb|EFD98207.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M1015]
 gi|291095654|gb|EFE25915.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|291467694|gb|EFF10209.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus M809]
 gi|294822630|gb|EFG39070.1| thioredoxin-disulfide reductase [Staphylococcus aureus A9754]
 gi|294968633|gb|EFG44656.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8819]
 gi|296886764|gb|EFH25668.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ATCC 51811]
 gi|297177885|gb|EFH37134.1| thioredoxin-disulfide reductase [Staphylococcus aureus A8796]
 gi|298694096|gb|ADI97318.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus ED133]
 gi|300886847|gb|EFK82049.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus TCH70]
 gi|302332475|gb|ADL22668.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus JKD6159]
 gi|302750661|gb|ADL64838.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus str. JKD6008]
 gi|304339978|gb|EFM05922.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|312438808|gb|ADQ77879.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus TCH60]
 gi|312829256|emb|CBX34098.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ECT-R 2]
 gi|315129450|gb|EFT85443.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|315196441|gb|EFU26792.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320139901|gb|EFW31762.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320142008|gb|EFW33836.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323438703|gb|EGA96444.1| thioredoxin reductase [Staphylococcus aureus O11]
 gi|323441291|gb|EGA98958.1| thioredoxin reductase [Staphylococcus aureus O46]
 gi|329313485|gb|AEB87898.1| Thioredoxin reductase [Staphylococcus aureus subsp. aureus T0131]
 gi|329723800|gb|EGG60328.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 21189]
 gi|329724572|gb|EGG61079.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 21172]
 gi|329729638|gb|EGG66039.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus 21193]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|330803278|ref|XP_003289635.1| hypothetical protein DICPUDRAFT_80413 [Dictyostelium purpureum]
 gi|325080283|gb|EGC33845.1| hypothetical protein DICPUDRAFT_80413 [Dictyostelium purpureum]
          Length = 276

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 40/105 (38%)

Query: 455 CIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFS 514
              E   +   +  ++    +  L++ ++  + L +  I  ++  K R   E +      
Sbjct: 172 LEREEADRIEKERQEKERIEQERLEAELIEKERLEAERIEKERLEKERLEAERIEKERLE 231

Query: 515 IQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFE 559
            + L +   +  +      ER++ E   A    ++ +E + ++ E
Sbjct: 232 KERLEAERIEKERLEKEENERIEKERLEAERIEKERLEKERLEAE 276


>gi|317495134|ref|ZP_07953504.1| thioredoxin-disulfide reductase [Gemella moribillum M424]
 gi|316914556|gb|EFV36032.1| thioredoxin-disulfide reductase [Gemella moribillum M424]
          Length = 309

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          M  + YD+I++G G AG  A+  A++   S  ++  K
Sbjct: 4  MSEKIYDLIIVGAGPAGMTASIYASRANMSVLMLERK 40


>gi|312891613|ref|ZP_07751125.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Mucilaginibacter paludis DSM 18603]
 gi|311295895|gb|EFQ73052.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Mucilaginibacter paludis DSM 18603]
          Length = 636

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +  DVIV+G G AG   AA  A LG       
Sbjct: 31 KKLDVIVVGTGLAGASCAASLADLGYKVKTFC 62


>gi|307287224|ref|ZP_07567292.1| dihydrolipoyl dehydrogenase [Enterococcus faecalis TX0109]
 gi|306501681|gb|EFM70973.1| dihydrolipoyl dehydrogenase [Enterococcus faecalis TX0109]
          Length = 450

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          +YD+IVIG G  G  AA  AA+LG   A++      IG    ++ C P+
Sbjct: 3  NYDLIVIGAGPGGYVAAIKAAQLGKKVAVVEKN--KIGGTCLNVGCIPS 49


>gi|290962769|ref|YP_003493951.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260652295|emb|CBG75428.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 864

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 346 HDAYDAVIVGGGHNGLVAAAYLARAGRSVLVL 377


>gi|260574898|ref|ZP_05842900.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodobacter sp. SW2]
 gi|259022903|gb|EEW26197.1| NADH:flavin oxidoreductase/NADH oxidase [Rhodobacter sp. SW2]
          Length = 671

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V V+GGG AG   A VAA+ G    L 
Sbjct: 377 VAVVGGGPAGMMCAMVAAERGHRVVLF 403


>gi|167761621|ref|ZP_02433748.1| hypothetical protein CLOSCI_04033 [Clostridium scindens ATCC
          35704]
 gi|167660764|gb|EDS04894.1| hypothetical protein CLOSCI_04033 [Clostridium scindens ATCC
          35704]
          Length = 475

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD+I+IG G  G  AA  AAKLG S  +I
Sbjct: 1  MGKQYDLIIIGAGPGGYVAAKKAAKLGMSVVII 33


>gi|187922293|ref|YP_001893935.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
 gi|187713487|gb|ACD14711.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN]
          Length = 376

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          +  + DV+VIGGG  G   A   A+ G +  L+   T   GS   +P I
Sbjct: 1  MRETADVVVIGGGSTGSSVAWHLARAGLTVRLLERGTIASGSSGDSPGI 49


>gi|14520528|ref|NP_126003.1| sarcosine oxidase, subunit alpha [Pyrococcus abyssi GE5]
 gi|5457744|emb|CAB49234.1| soxA sarcosine oxidase, subunit alpha [Pyrococcus abyssi GE5]
          Length = 481

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           D+IVIGGG AG  AA  A   GA   LI    
Sbjct: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENP 152


>gi|320158312|ref|YP_004190690.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          vulnificus MO6-24/O]
 gi|319933624|gb|ADV88487.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          vulnificus MO6-24/O]
          Length = 438

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +YD+ VIGGG AG  AA  A + G  T LI+ 
Sbjct: 3  NYDIAVIGGGIAGYCAALKALEEGKKTVLISQ 34


>gi|300857894|ref|YP_003782877.1| dihydrolipoamide dehydrogenase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685348|gb|ADK28270.1| dihydrolipoamide dehydrogenase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205621|gb|ADL09963.1| Flavoprotein disulfide reductase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330173|gb|ADL20367.1| Flavoprotein disulfide reductase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275856|gb|ADO25755.1| Flavoprotein disulfide reductase [Corynebacterium
           pseudotuberculosis I19]
          Length = 489

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 13/163 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--SCNPAIGGLGKGHLVREIDAL 65
           +++IGGG AG EAA   AK GA   +I  +     ++   C P+   +   ++  ++   
Sbjct: 25  IVIIGGGPAGYEAALAGAKYGADITIIEDRGLGGAAVINDCVPSKSFIAGANIKTDLRRA 84

Query: 66  DGL-MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---------E 115
           D + + +    A +    LN  +  A+ G ++   R        R +  +         +
Sbjct: 85  DDMGLNKGIGEANLLLDALNA-RVQALAGEQSGDIRRSVINQGVRVLDGRGSFDDYNPKQ 143

Query: 116 NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158
            L  I+ E+     E      +++   +  R        G  +
Sbjct: 144 TLHYIKAELNDGTVETIECDLVLVATGATPRILPGAQPDGERI 186


>gi|298241814|ref|ZP_06965621.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297554868|gb|EFH88732.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 485

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 23/230 (10%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE-IDALDG 67
           ++ GGG  G E A    +LG    LI      +     +P +     G L  E ID +  
Sbjct: 172 VIAGGGPIGVELAQALGRLGTKITLI-QGPERLLP-REDPEVSETIAGILKSEDIDIITN 229

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV--IQGEVA 125
                A   G + +V+  ++G  ++  + +AD  L  L  Q  I    NL+   +Q    
Sbjct: 230 ARVVKAHHNGTK-KVVTARQG--MQMLQFEADELLLALGRQPNIEEHLNLEAAGVQYNEK 286

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNS 185
           G   ++++ +S+             +   G  + G +        AG    +    L   
Sbjct: 287 GILVDEHLQTSVP-----------NIFALGDVIGGYLFTHVASYHAGIAVRNALVPLAK- 334

Query: 186 FMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
             K D+      T T   +    ++  + E+Q   + +    F   KI  
Sbjct: 335 -KKVDYRVVPWCTFTEPEVARVGLLPVEAERQH--KHVRIMKFPWSKIDR 381



 Score = 38.4 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD+ +IGGG AG  AA +A  LGA+  LI
Sbjct: 1  MPRTHYDLAIIGGGSAGLTAAHLAQSLGANVLLI 34


>gi|255014030|ref|ZP_05286156.1| dihydrolipoamide dehydrogenase [Bacteroides sp. 2_1_7]
          Length = 449

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YD+ +IGGG AG  AA  A++ G  T L    
Sbjct: 2  EYDIAIIGGGPAGYTAAERASENGLKTILFEKN 34


>gi|241765617|ref|ZP_04763572.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax
          delafieldii 2AN]
 gi|241364555|gb|EER59621.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax
          delafieldii 2AN]
          Length = 602

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV++IG G +G  AA   ++ G + A ++
Sbjct: 10 KRKFDVVIIGAGGSGMRAALELSRAGLNVASLS 42


>gi|237718776|ref|ZP_04549257.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293372150|ref|ZP_06618541.1| pyridine nucleotide-disulfide oxidoreductase [Bacteroides ovatus SD
           CMC 3f]
 gi|299144656|ref|ZP_07037724.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Bacteroides sp. 3_1_23]
 gi|229451908|gb|EEO57699.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292632942|gb|EFF51529.1| pyridine nucleotide-disulfide oxidoreductase [Bacteroides ovatus SD
           CMC 3f]
 gi|298515147|gb|EFI39028.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Bacteroides sp. 3_1_23]
          Length = 456

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IG G  G   AA  AK G   A++       G    N  IG +    LV +    
Sbjct: 4   FDVIIIGFGKGGKTLAAEFAKRGRKVAIVERSDKMYGGTCIN--IGCIPTKTLVHQAKIA 61

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G+     +     +R     K       R   D+  + LA         N+ V  G V 
Sbjct: 62  SGMKNSTFEERREFYRNAIAVKESVTSALR---DKNYHNLA------DHPNVTVYTG-VG 111

Query: 126 GFNTEKNIISSIVMQDNSMI-RCSTVVLTTGT 156
            F +    + S+      +      +++ TG 
Sbjct: 112 SFVSAD--VVSVRTSTEEIWLTSKQIIINTGA 141


>gi|256395132|ref|YP_003116696.1| glycine oxidase ThiO [Catenulispora acidiphila DSM 44928]
 gi|256361358|gb|ACU74855.1| glycine oxidase ThiO [Catenulispora acidiphila DSM 44928]
          Length = 388

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 29/234 (12%)

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT-----QADRELYRLAMQREILSQENLDV 119
              L  +     G + R L     P VRG        Q D  +   A+   +     + +
Sbjct: 121 QQSLGLKAEWLTGREARRLEPMLAPGVRGGLLVSGDHQVDNRMLLAALFAALERDPKVTI 180

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ +VA      +  + +V++D + +  + VVL+ G            +I        P 
Sbjct: 181 VRSKVAELTVTGDRATGVVLEDGTALPAAQVVLSAG--------CWSGQIAGIPEELLPP 232

Query: 180 N----------SLFNSFMKFDFDTGRLKTGTP-----ARLDGKTIIWDKTEKQFADERLI 224
                      ++ + F  F   T R            R  G+ ++    E+Q  D  + 
Sbjct: 233 VRPIKGQILRLAIPDVFKPFLSRTVRYVVRNNHAYLVPRAHGELVLGATVEEQDYDTAVT 292

Query: 225 PFSFMTDKITNRQIECGITRTNL-ETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277
                      R++  GIT   L ET   +      +A   G     G  Y   
Sbjct: 293 AGGVYELLRDARELVPGITELPLIETRAALRPGTPDNAPLIGPTALPGLLYATG 346


>gi|229181412|ref|ZP_04308740.1| Thioredoxin reductase [Bacillus cereus 172560W]
 gi|228601987|gb|EEK59480.1| Thioredoxin reductase [Bacillus cereus 172560W]
          Length = 318

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|169828955|ref|YP_001699113.1| dihydrolipoamide dehydrogenase [Lysinibacillus sphaericus C3-41]
 gi|168993443|gb|ACA40983.1| Dihydrolipoyl dehydrogenase [Lysinibacillus sphaericus C3-41]
          Length = 475

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+++GGG  G  AA  AA+LG  TA++
Sbjct: 1  MAQNYDVVILGGGTGGYVAAIRAAQLGLKTAIV 33


>gi|126653077|ref|ZP_01725212.1| dihydrolipoamide dehydrogenase [Bacillus sp. B14905]
 gi|126590178|gb|EAZ84302.1| dihydrolipoamide dehydrogenase [Bacillus sp. B14905]
          Length = 475

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++YDV+++GGG  G  AA  AA+LG  TA++
Sbjct: 1  MAQNYDVVILGGGTGGYVAAIRAAQLGLKTAIV 33


>gi|78185573|ref|YP_378007.1| thioredoxin-disulfide reductase [Synechococcus sp. CC9902]
 gi|78169867|gb|ABB26964.1| Thioredoxin-disulfide reductase [Synechococcus sp. CC9902]
          Length = 319

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IGGG AGC  A   A+    T +          +  NPA+G L   H
Sbjct: 8  DVLIIGGGPAGCACALYTARSSIKTQI----------LDKNPAVGALAITH 48


>gi|30023192|ref|NP_834823.1| thioredoxin reductase [Bacillus cereus ATCC 14579]
 gi|228923882|ref|ZP_04087159.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228942293|ref|ZP_04104832.1| Thioredoxin reductase [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228961384|ref|ZP_04122998.1| Thioredoxin reductase [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228975222|ref|ZP_04135780.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|229050818|ref|ZP_04194370.1| Thioredoxin reductase [Bacillus cereus AH676]
 gi|229112564|ref|ZP_04242101.1| Thioredoxin reductase [Bacillus cereus Rock1-15]
 gi|229193398|ref|ZP_04320346.1| Thioredoxin reductase [Bacillus cereus ATCC 10876]
 gi|29898752|gb|AAP12024.1| Thioredoxin reductase [Bacillus cereus ATCC 14579]
 gi|228590053|gb|EEK47924.1| Thioredoxin reductase [Bacillus cereus ATCC 10876]
 gi|228670944|gb|EEL26251.1| Thioredoxin reductase [Bacillus cereus Rock1-15]
 gi|228722474|gb|EEL73867.1| Thioredoxin reductase [Bacillus cereus AH676]
 gi|228784501|gb|EEM32522.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228798269|gb|EEM45268.1| Thioredoxin reductase [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|228817337|gb|EEM63423.1| Thioredoxin reductase [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228835681|gb|EEM81045.1| Thioredoxin reductase [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 321

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 7  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 38


>gi|49483021|ref|YP_040245.1| thioredoxin reductase [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|282903394|ref|ZP_06311285.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C160]
 gi|282905174|ref|ZP_06313031.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282908152|ref|ZP_06315983.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|283957596|ref|ZP_06375049.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|295427342|ref|ZP_06819977.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297590303|ref|ZP_06948942.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus MN8]
 gi|81651520|sp|Q6GIM7|TRXB_STAAR RecName: Full=Thioredoxin reductase; Short=TRXR
 gi|49241150|emb|CAG39828.1| putative thioredoxin reductase [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|282327817|gb|EFB58099.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|282331581|gb|EFB61093.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282596349|gb|EFC01310.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus C160]
 gi|283791047|gb|EFC29862.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus A017934/97]
 gi|295128730|gb|EFG58361.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297576602|gb|EFH95317.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus MN8]
 gi|315194383|gb|EFU24775.1| putative thioredoxin reductase [Staphylococcus aureus subsp.
          aureus CGS00]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|15965233|ref|NP_385586.1| putative salicylate hydroxylase protein [Sinorhizobium meliloti
          1021]
 gi|307309256|ref|ZP_07588924.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
 gi|15074413|emb|CAC46059.1| Putative salicylate hydroxylase [Sinorhizobium meliloti 1021]
 gi|306900257|gb|EFN30874.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
          Length = 387

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + ++  V ++G G AG  AA   A+ G  T +       +        +       L+ 
Sbjct: 1  MQKADPVAIVGAGIAGLTAALCLARKGFRTDIFEQ-ADALEEAGAGLQLSPNASRILIE 58


>gi|116490632|ref|YP_810176.1| thioredoxin reductase [Oenococcus oeni PSU-1]
 gi|290890044|ref|ZP_06553127.1| hypothetical protein AWRIB429_0517 [Oenococcus oeni AWRIB429]
 gi|116091357|gb|ABJ56511.1| Thioredoxin reductase [Oenococcus oeni PSU-1]
 gi|290480235|gb|EFD88876.1| hypothetical protein AWRIB429_0517 [Oenococcus oeni AWRIB429]
          Length = 313

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV++IG G AG   A  A++   S  +I
Sbjct: 1  MTQKYDVVIIGAGPAGMTTATYASRANLSVMMI 33


>gi|322699304|gb|EFY91067.1| cellobiose dehydrogenase [Metarhizium acridum CQMa 102]
          Length = 586

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +S+DVIV+G G AG   A   ++ G  T L+    ++ G
Sbjct: 28 QSWDVIVVGAGTAGIIVADRLSEAGYKTLLLQQGGNSYG 66


>gi|283470057|emb|CAQ49268.1| thioredoxin-disulfide reductase [Staphylococcus aureus subsp.
          aureus ST398]
          Length = 311

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +D+ +IG G AG  AA  A++    T +I
Sbjct: 1  MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMI 34


>gi|239626138|ref|ZP_04669169.1| glucose-inhibited division protein A [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520368|gb|EEQ60234.1| glucose-inhibited division protein A [Clostridiales bacterium
           1_7_47FAA]
          Length = 424

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 149/479 (31%), Gaps = 84/479 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI +   ++++GGG AGC A+A AAK GAS  L+    S +G+      I   G+     
Sbjct: 1   MIMK---IVIVGGGWAGCAASAQAAKNGASVTLLERTDSLLGTGLVGGIIRNNGRFTATE 57

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+ A+ G     A    ++ + ++              D     +A+++ +L Q  + + 
Sbjct: 58  EMAAMGGDDMFRAMDTCLRHKCIS----FPGHQHADLYDIIKTPVAVEQRLL-QLGVSIH 112

Query: 121 QGE---VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT---------FLRGVIHIGKLK 168
           +      A  + +   I S+   + +       +  TGT         +  G        
Sbjct: 113 RQSRVASADLSGDNTTILSVRDDNGNCYEADGFIDATGTAGPMNNCRQYGNGCAMCVLRC 172

Query: 169 -IPAGRMGDSPSNSLFNSFMK-----FDFDTGRLKTGTPARLDGKTIIWDKTEKQFADER 222
               GR+       L     +     +   +G  K      L  + I     ++      
Sbjct: 173 PSFGGRISLCGLTGLTELKAEAHDGSYGAMSGSCKLFKE-SLSPEII--KALDENGVAVI 229

Query: 223 LIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKI 282
            +P     + ++ +   C     +     II+ +  H+ + +       P Y      +I
Sbjct: 230 PLPRELRENHLSIKA--CQQYALDEFAENIILLDTGHAKMMT-------PYYPLEKLHQI 280

Query: 283 VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIE 342
             F            E    +  Y  G   ++         R                  
Sbjct: 281 PGF------------ECARYEDPYAGGKGNSMRY---LAMCRR----------------- 308

Query: 343 YDYINPKELFPTLETKKISGLFLAGQING-TTGYEEAAAQGLVAGINSARKSNKLDCICF 401
                      +L+  + + LF AG+  G   G+ EA   G++AG N  +  +    + F
Sbjct: 309 ---------SNSLKVDQRANLFCAGEKAGLLVGHTEAIVTGVLAGHNMVQFLSGRPLLEF 359

Query: 402 SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRL--TPIGMKLGCIGE 458
            R  +    +          E  R   + +      R  N D  L     G     + +
Sbjct: 360 PRELAVGEAIAWVREQMETPEGLREKYTFS-GSCLFRRMN-DLGLYSIDKGYIHKKVED 416


>gi|262204260|ref|YP_003275468.1| cyclic nucleotide-binding protein [Gordonia bronchialis DSM 43247]
 gi|262087607|gb|ACY23575.1| cyclic nucleotide-binding protein [Gordonia bronchialis DSM 43247]
          Length = 575

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 41/180 (22%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++V+G G AG      A+  G+S  L T    +I                      A  
Sbjct: 251 DLVVVGAGPAG----LAASVYGSSDGLNTVTLESI----------------------AAG 284

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G        A    R+ N    PA       A+R L +       L      ++  EV G
Sbjct: 285 G-------QASTSSRIENYLGFPAGISGAELAERALIQAGKFGTRL------LVSAEVTG 331

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
             +E      + + D   IR   VVL TG   R  + +  ++   GR     +       
Sbjct: 332 LGSEGGHHV-LRLADGGEIRARAVVLATGARYR-KLEVPGIEALEGRSVYYAATHQEARL 389


>gi|224062569|ref|XP_002197099.1| PREDICTED: similar to homer homolog 2 [Taeniopygia guttata]
          Length = 456

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 436 SLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISF 495
           SLR  NA  RL+    +     E  +K+F+   +E + LR  ++ L      ++      
Sbjct: 291 SLRESNA--RLSTALQESAASIEHWKKQFSACKEENDQLRGKIEELEEQCNEINKEKERN 348

Query: 496 KQDGKT-RTAYEFLSYPDFSIQNLF---SICPDARKFSSLVIERLQIESSYAAYTGRQMI 551
            Q  +  +     L   +  ++ L     I P+       V E+LQ              
Sbjct: 349 AQLSRRLQELETELQDKELELEELRKQGEIIPELMSECESVSEQLQAAEK---------- 398

Query: 552 EAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNL 592
              + K  E            +  L  E++E  +  +   L
Sbjct: 399 ---KNKDLE----------EKVRTLRTEVEE--NKHRQTTL 424


>gi|222087451|ref|YP_002545988.1| dihydrolipoamide dehydrogenase [Agrobacterium radiobacter K84]
 gi|221724899|gb|ACM28055.1| dihydrolipoamide dehydrogenase [Agrobacterium radiobacter K84]
          Length = 468

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 28/167 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDVI+IG G  G   A  AA+LG   A+I  K +T G    ++ C P+   L    +  
Sbjct: 2   SYDVIIIGTGPGGYVCAVKAAQLGLKVAVIE-KRATYGGTCLNVGCIPSKALLHASEVFH 60

Query: 61  EIDALDGLMGRVADAAGIQFR--VLNVKKGPAVR--GPRTQADRELYRLAMQREILSQEN 116
                    G   DA G++     LN+ K  A +    ++  D   +       +  +  
Sbjct: 61  -------HAGHGMDALGVEVSAPTLNLPKMMAHKDATVKSNVDGVAF-------LFKKNK 106

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTTGTFLRGV 161
           +D  QG   G       +S +  +D   + I    +V+ TG+ + G+
Sbjct: 107 IDTFQG--TGKIVSAGKVS-VTAEDGKVTEIEAKNIVIATGSDVAGI 150


>gi|219124022|ref|XP_002182312.1| carotenoid isomerase-like protein [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217406273|gb|EEC46213.1| carotenoid isomerase-like protein [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 923

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
            R +D IVIG G  GC  A + A+ G    ++   T T G   C  +    G 
Sbjct: 312 QRRFDTIVIGSGSGGCACANLLAQSGQRVLILEQHTKTGG---CTHSFRDRGC 361


>gi|126740253|ref|ZP_01755942.1| dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
 gi|126718708|gb|EBA15421.1| dihydrolipoamide dehydrogenase [Roseobacter sp. SK209-2-6]
          Length = 563

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +D +VIG G  G  AA  AA LG S AL+    +  G       I      H+ + +
Sbjct: 102 DQMFDTVVIGAGPGGYSAAFRAADLGQSVALVDSGANLGGVCLNVGCIPSKALLHVAKVM 161

Query: 63  DALDGLMGRVADAAGIQF 80
           D  + L     D    QF
Sbjct: 162 DEAEDLAAHGVDFGTAQF 179


>gi|119492926|ref|ZP_01623956.1| FAD dependent oxidoreductase [Lyngbya sp. PCC 8106]
 gi|119452852|gb|EAW34026.1| FAD dependent oxidoreductase [Lyngbya sp. PCC 8106]
          Length = 564

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVI+IG GH G   AA   K G S  L+
Sbjct: 2  ETYDVIIIGAGHNGLTCAAYLLKAGYSVLLL 32


>gi|94499566|ref|ZP_01306103.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component, and related enzyme
          [Oceanobacter sp. RED65]
 gi|94428320|gb|EAT13293.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component, and related enzyme
          [Oceanobacter sp. RED65]
          Length = 464

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M +  YDVIV+G G +G  AA  AAK G   A++       G+ +    I      H V+
Sbjct: 1  MADYHYDVIVLGTGPSGEGAAMNAAKKGKKVAVVEEAPLVGGNCTHWGTIPSKALRHSVK 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|120406080|ref|YP_955909.1| putative FAD-binding dehydrogenase [Mycobacterium vanbaalenii
          PYR-1]
 gi|119958898|gb|ABM15903.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mycobacterium vanbaalenii PYR-1]
          Length = 555

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIG 42
          DVIV+G G AG  AA   A  G S  ++    ++ IG
Sbjct: 14 DVIVVGAGLAGLVAACELADRGRSVLIVDQENSANIG 50


>gi|86130190|ref|ZP_01048790.1| FAD dependent oxidoreductase [Dokdonia donghaensis MED134]
 gi|85818865|gb|EAQ40024.1| FAD dependent oxidoreductase [Dokdonia donghaensis MED134]
          Length = 372

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + + YD+I++GGG AG  AA   ++   S  LI   
Sbjct: 1  MRQDYDIIIVGGGLAGLTAALHLSQSAHSILLIEKN 36


>gi|330719064|ref|ZP_08313664.1| fumarate reductase flavoprotein subunit [Leuconostoc fallax KCTC
          3537]
          Length = 458

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          +N +YDVI+IG G AG  +A  A +LG    +I             P+IGG  K
Sbjct: 7  MNENYDVIIIGSGSAGLVSAIQAYELGLKPIIIE----------KMPSIGGNTK 50


>gi|329957453|ref|ZP_08297928.1| hypothetical protein HMPREF9445_02807 [Bacteroides clarus YIT
           12056]
 gi|328522330|gb|EGF49439.1| hypothetical protein HMPREF9445_02807 [Bacteroides clarus YIT
           12056]
          Length = 541

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIG-SMSCNP----AIGGL 53
           VIV+G G  G  AA    +LG    ++             + IG   + NP    + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKNVRDRKKDLALIGREQTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASSSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     E + +  I       +    V+L TG   R V 
Sbjct: 199 NMRNTIIDCGGEVHFETRMDALIIENDEVKGIETNTGQTLLGP-VILATGHSARDVY 254


>gi|312218093|emb|CBX98039.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1573

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 15/158 (9%)

Query: 410 VMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLG---CIGERRQKRFAK 466
           +  D  T K   +  R      E R+ ++ D         G  +G      +    R A+
Sbjct: 552 LQTDLATEKKDNQSLRKKLKDLERRLKIQEDG-----RAAGKDVGNGSDDDKSDSSRQAE 606

Query: 467 YIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSY---PDFSIQNLFS--- 520
             +E  FLR  L+S     +     ++  + D +    Y        P+     L     
Sbjct: 607 MEEEIEFLRERLESTETIVEQWQQEALQKEADNRRMADYIKTMREKSPNGESAGLDEAVV 666

Query: 521 ICPDARKFSSLVIERLQIES-SYAAYTGRQMIEAKEIK 557
           +  +  +      E+++       A   +   E + ++
Sbjct: 667 MWKEDLEDERARREQVETRCQQAEADCEKLREEVQRLR 704


>gi|311693549|gb|ADP96422.1| secreted protein-putative xanthan lyase [marine bacterium HP15]
          Length = 857

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 17/199 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+  G    G  AA  AA+ G   AL+               +GG+    L      LD
Sbjct: 287 DVVSYGATPGGIVAAYEAARQGLRVALVGGWRDR--------HLGGMMAAGLNHLDIGLD 338

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL-----SQENLDVIQ 121
            L+G ++D        LN +   A    +   +  +   A +  +       Q       
Sbjct: 339 ALVGGLSDWVVDTQTRLNGEVRSASNVVQRNCEPHVAEGAFRSMLDPKRKHGQAITVYWS 398

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGR--MGDSPS 179
             V     +   I SI   D    R +T     G++   +I    ++   GR   G+   
Sbjct: 399 DGVDTVQKDGAEIVSITTVDGRTFRAAT--FHDGSYEGDLIARAGVRYRIGREAAGELAG 456

Query: 180 NSLFNSFMKFDFDTGRLKT 198
            +L      +D       T
Sbjct: 457 EALNGYNPYYDTKVDPYNT 475


>gi|261328535|emb|CBH11512.1| NADH-dependent fumarate reductase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 904

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 146 VIVVGGGLAGLSAAIEAAGCGAQVVLM 172


>gi|261328014|emb|CBH10991.1| NADH-dependent fumarate reductase [Trypanosoma brucei gambiense
           DAL972]
          Length = 1115

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 384 VIVVGGGLAGLSAAIEAAGCGAQVVLM 410


>gi|260223162|emb|CBA33450.1| Uncharacterized protein yhiN [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 300

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           S+DV+++G G AG   A VA +LG    ++ H    +        I G G+ +
Sbjct: 2  HSFDVVIVGAGAAGLFCAGVAGQLGLKVLVLDHS-EKVAEKIR---ISGGGRSN 51


>gi|171184629|ref|YP_001793548.1| FAD dependent oxidoreductase [Thermoproteus neutrophilus V24Sta]
 gi|170933841|gb|ACB39102.1| FAD dependent oxidoreductase [Thermoproteus neutrophilus V24Sta]
          Length = 482

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKL-GASTALI 34
           YDV+++G G AG  AA   AK  G  TALI
Sbjct: 18 DYDVVIVGAGPAGLFAALELAKAGGLRTALI 48


>gi|168702924|ref|ZP_02735201.1| FAD dependent oxidoreductase [Gemmata obscuriglobus UQM 2246]
          Length = 529

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N ++D I+IGGGH G   AA  AK G    ++
Sbjct: 1  MANNTHDAIIIGGGHNGLVTAAYLAKTGYKVLVL 34


>gi|167629086|ref|YP_001679585.1| phytoene dehydrogenase, putative [Heliobacterium modesticaldum
          Ice1]
 gi|167591826|gb|ABZ83574.1| phytoene dehydrogenase, putative [Heliobacterium modesticaldum
          Ice1]
          Length = 506

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI++G G  G  AAA  A  G    L 
Sbjct: 7  YDVIIVGAGFGGLTAAACLAHKGQRVLLC 35


>gi|115385537|ref|XP_001209315.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187762|gb|EAU29462.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 531

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +    DV++ G G AG  AA   A+ G S          I      P + G   G   R 
Sbjct: 52  MVEKVDVLICGSGSAGLCAATWLARHGISC--------KILERRDGPLVLGQADGVQCRT 103

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           ++  +   G   +     + VL V              R       Q  +  Q +L + Q
Sbjct: 104 VEIFESF-GIGEELLREAYHVLEVAFWAEDAPGAGAIKRTGRTADTQPGLSHQPHLILNQ 162

Query: 122 GEVAGFNTEKNI 133
             + G   E   
Sbjct: 163 ARINGLLIEAMR 174


>gi|72388944|ref|XP_844767.1| NADH-dependent fumarate reductase [Trypanosoma brucei TREU927]
 gi|62176060|gb|AAX70181.1| NADH-dependent fumarate reductase [Trypanosoma brucei]
 gi|70801301|gb|AAZ11208.1| NADH-dependent fumarate reductase [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1142

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 384 VIVVGGGLAGLSAAIEAAGCGAQVVLM 410


>gi|72388946|ref|XP_844768.1| NADH-dependent fumarate reductase [Trypanosoma brucei TREU927]
 gi|62176059|gb|AAX70180.1| NADH-dependent fumarate reductase, putative [Trypanosoma brucei]
 gi|70801302|gb|AAZ11209.1| NADH-dependent fumarate reductase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 877

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 146 VIVVGGGLAGLSAAIEAAGCGAQVVLM 172


>gi|23928423|gb|AAN40014.1|AF457132_1 NADH-dependent fumarate reductase [Trypanosoma brucei]
          Length = 1142

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 384 VIVVGGGLAGLSAAIEAAGCGAQVVLM 410


>gi|60460038|gb|AAX20163.1| mitochondrial NADH-dependent fumarate reductase [Trypanosoma
           brucei]
          Length = 1142

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 384 VIVVGGGLAGLSAAIEAAGCGAQVVLM 410


>gi|60460039|gb|AAX20164.1| mitochondrial NADH-dependent fumarate reductase [Trypanosoma
           brucei]
          Length = 877

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           VIV+GGG AG  AA  AA  GA   L+
Sbjct: 146 VIVVGGGLAGLSAAIEAAGCGAQVVLM 172


>gi|77458532|ref|YP_348037.1| D-amino-acid dehydrogenase [Pseudomonas fluorescens Pf0-1]
 gi|77382535|gb|ABA74048.1| putative D-amino acid dehydrogenase [Pseudomonas fluorescens
          Pf0-1]
          Length = 420

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YD+ V+G G  G  +A   A+ G    +I
Sbjct: 1  MPNNPYDIAVVGAGIIGVASALRLARQGLRVVVI 34


>gi|88809097|ref|ZP_01124606.1| putative oxidoreductase [Synechococcus sp. WH 7805]
 gi|88787039|gb|EAR18197.1| putative oxidoreductase [Synechococcus sp. WH 7805]
          Length = 445

 Score = 40.7 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + RS DV VIGGG AG  AA    K G    L+
Sbjct: 1  MARSVDVAVIGGGFAGITAARDLQKRGFKVLLL 33


>gi|329927879|ref|ZP_08281940.1| FAD binding domain protein [Paenibacillus sp. HGF5]
 gi|328938280|gb|EGG34675.1| FAD binding domain protein [Paenibacillus sp. HGF5]
          Length = 549

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YDVIV+G G +G  A A  A  G    L+  +  +        +IGG  
Sbjct: 2  KYDVIVVGAGLSGLVATAEMAGAGKRVLLLDQEPES--------SIGGQA 43


>gi|319775465|ref|YP_004137953.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor
           subunit [Haemophilus influenzae F3047]
 gi|329122502|ref|ZP_08251087.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|317450056|emb|CBY86270.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor
           subunit [Haemophilus influenzae F3047]
 gi|327473192|gb|EGF18614.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|312140082|ref|YP_004007418.1| succinate dehydrogenase flavoprotein subunit sdha1 [Rhodococcus
          equi 103S]
 gi|311889421|emb|CBH48738.1| succinate dehydrogenase flavoprotein subunit SdhA1 [Rhodococcus
          equi 103S]
          Length = 645

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
            YDV+VIG G AG  A   A + G S A++       G      A GG  
Sbjct: 9  HRYDVVVIGAGGAGLRAVIEARERGLSVAVVCKSL--FGKAHTVMAEGGCA 57


>gi|301169401|emb|CBW29001.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor
           subunit [Haemophilus influenzae 10810]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|325674441|ref|ZP_08154129.1| succinate dehydrogenase flavoprotein subunit [Rhodococcus equi
          ATCC 33707]
 gi|325554701|gb|EGD24375.1| succinate dehydrogenase flavoprotein subunit [Rhodococcus equi
          ATCC 33707]
          Length = 643

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
            YDV+VIG G AG  A   A + G S A++       G      A GG  
Sbjct: 7  HRYDVVVIGAGGAGLRAVIEARERGLSVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|259502731|ref|ZP_05745633.1| thioredoxin-disulfide reductase [Lactobacillus antri DSM 16041]
 gi|259169376|gb|EEW53871.1| thioredoxin-disulfide reductase [Lactobacillus antri DSM 16041]
          Length = 310

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G  G   A  A++      ++
Sbjct: 4  EKQYDVIIIGAGPGGMTTALYASRANLKVVML 35


>gi|260463336|ref|ZP_05811537.1| monooxygenase FAD-binding [Mesorhizobium opportunistum WSM2075]
 gi|259030926|gb|EEW32201.1| monooxygenase FAD-binding [Mesorhizobium opportunistum WSM2075]
          Length = 410

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 10/157 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGS-MSCNPAIGGLGK--G 56
           ++    V++ G G AG  AA   A+ G    +     +   +G+ +  +P    + +  G
Sbjct: 1   MDDKRQVVIAGAGVAGLTAALAFAERGYPVQVFEQAQRLEAVGAGIQLSPNATRILRQLG 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR----GPRTQADRELYRLAMQREIL 112
            L R + A       V   A     +  V  G A       P   A R   + A+   + 
Sbjct: 61  VLKRLLPATVRPEAVVLKDARTLRELARVPLGQAAEERWGAPYLVAHRADLQSALTAHVA 120

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCS 148
              N+ +++G  V+G  T  + +++ +  D   ++  
Sbjct: 121 ENPNIRLVKGARVSGAATGDDGVTATLETDGKTVQSQ 157


>gi|254468383|ref|ZP_05081789.1| succinate dehydrogenase, flavoprotein subunit [beta
          proteobacterium KB13]
 gi|207087193|gb|EDZ64476.1| succinate dehydrogenase, flavoprotein subunit [beta
          proteobacterium KB13]
          Length = 583

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M +  +DV+V+G G AG  +A   +  G + A+++
Sbjct: 1  MQHFKFDVLVVGAGGAGLRSALQLSDAGLNVAVLS 35


>gi|114706388|ref|ZP_01439290.1| OXIDOREDUCTASE [Fulvimarina pelagi HTCC2506]
 gi|114538249|gb|EAU41371.1| OXIDOREDUCTASE [Fulvimarina pelagi HTCC2506]
          Length = 427

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+GGG  G  AA   AK GA   L+       G+   N    G G+     E++   
Sbjct: 35  DVLVVGGGFTGLSAALNLAKTGAKVVLLEAHRFGDGASGRNGGQIGTGQRLWPDELEPEI 94

Query: 67  GL--------MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           G         +   A A+  +F  +N        G    A ++ Y    + ++ +
Sbjct: 95  GFEKSLALFRLAEEAKASLFEFLDVNQIDVDLRYGQLAVAHKKRYLADFRSQVEA 149


>gi|73973200|ref|XP_867023.1| PREDICTED: similar to PHD finger protein 3 isoform 3 [Canis
           familiaris]
          Length = 1955

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 428 TSRAEYRISLRPDNADN---RLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            S  + R S+R    D    RLT   +K   + E +  + A  I++   L S  +     
Sbjct: 836 PSADQIRQSVRHSLKDILMRRLTESNLK---VPEEKAAKVATKIEK--ELFSFFRDTDAK 890

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            KN   + +   +D K    ++ +   + +  +L  + P+      L   R +       
Sbjct: 891 YKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 950

Query: 545 YTGRQMIEAKE 555
              ++  E + 
Sbjct: 951 MIEKEQREVER 961


>gi|88811348|ref|ZP_01126603.1| Dihydrolipoamide dehydrogenase [Nitrococcus mobilis Nb-231]
 gi|88791237|gb|EAR22349.1| Dihydrolipoamide dehydrogenase [Nitrococcus mobilis Nb-231]
          Length = 591

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPA 49
           DV+VIG G  G  AA  AA LG  T L+       G   ++ C P+
Sbjct: 127 DVLVIGAGPGGYSAAFRAADLGLKTLLVERYPDLGGICLNVGCIPS 172


>gi|83950993|ref|ZP_00959726.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseovarius
           nubinhibens ISM]
 gi|83838892|gb|EAP78188.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseovarius
           nubinhibens ISM]
          Length = 657

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG EAA VAA+ G    + 
Sbjct: 387 VLVVGAGPAGLEAARVAAERGHRVEIH 413


>gi|66359978|ref|XP_627167.1| secreted glucose methanol choline like oxidoreductase of the FAD
          dependent oxidoreductase like fold, signal peptide
          [Cryptosporidium parvum Iowa II]
 gi|46228584|gb|EAK89454.1| secreted glucose methanol choline like oxidoreductase of the FAD
          dependent oxidoreductase like fold, signal peptide
          [Cryptosporidium parvum Iowa II]
          Length = 698

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  YDVI+IG G +GC  A V A  G    L+
Sbjct: 36 DEEYDVIIIGAGVSGCSMANVYANNGKKVLLL 67


>gi|309973825|gb|ADO97026.1| Anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae R2846]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|332561188|ref|ZP_08415506.1| oxidoreductase [Rhodobacter sphaeroides WS8N]
 gi|332274986|gb|EGJ20302.1| oxidoreductase [Rhodobacter sphaeroides WS8N]
          Length = 531

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YD I++GGGH G    A  A+ G    ++
Sbjct: 1  MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVV 33


>gi|308467098|ref|XP_003095799.1| hypothetical protein CRE_11384 [Caenorhabditis remanei]
 gi|308244456|gb|EFO88408.1| hypothetical protein CRE_11384 [Caenorhabditis remanei]
          Length = 495

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 68/190 (35%), Gaps = 28/190 (14%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLV 59
            +  D++VIGGG  G  AA  AA+LG  T  +    +  G+   + C P+   L   HL+
Sbjct: 27  TQDADLVVIGGGPGGYVAAIKAAQLGMKTVCVEKSPTLGGTCLNVGCIPSKALLNNSHLL 86

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR----TQADRELYRLAMQREILSQ- 114
               A      R  D        LN+ K    +       T   ++L++      +    
Sbjct: 87  H--MAQHDFANRGIDCTAT----LNLPKLMEAKSTSVKQLTGGIKQLFKANKVGHVEGFG 140

Query: 115 ----ENLDVIQ-----GEVAGFNTEKNIISSI--VMQD-NSMIRCSTVVLTTGTFLRGVI 162
                N   +Q     G V   N    +I+S   V       I    +V +TG    G +
Sbjct: 141 TIVGPNT--VQAKKSDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQV 198

Query: 163 HIGKLKIPAG 172
               + I AG
Sbjct: 199 PKKMVVIGAG 208


>gi|307546304|ref|YP_003898783.1| 5-methylaminomethyl-2-thiouridinemethyltransferas e [Halomonas
           elongata DSM 2581]
 gi|307218328|emb|CBV43598.1| 5-methylaminomethyl-2-thiouridinemethyltransferase [Halomonas
           elongata DSM 2581]
          Length = 674

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V VIGGG AG   AA  A+ G +  LI
Sbjct: 273 VAVIGGGIAGTSVAAALARRGVAVTLI 299


>gi|293358901|ref|XP_002729465.1| PREDICTED: ankyrin repeat domain 26 isoform 1 [Rattus norvegicus]
          Length = 1532

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 425  RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            R+     ++ + L   N       + ++   + ER  +   +  +    +R L + L  T
Sbjct: 1000 RVQAESQKHSLRLEDRN-----QELIIECSHLKERMCQYENEKAEREVAVRQLQQELADT 1054

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             K  S +  S +   + R++ E  +      +NL  +    ++      E +Q       
Sbjct: 1055 LKKQSMSEASLEVSSRYRSSLEEEARDL--KKNLSQLRSQLQEAQDQHREAVQRAEKMQD 1112

Query: 545  YTGRQMIEAKEIK------FEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +  +  +E  + K       EE   + ++    S   LS E +EKL  
Sbjct: 1113 HLQKLELENSKFKITIKTQSEEIEQLQENL---SNGNLSEEDQEKLKK 1157


>gi|260655393|ref|ZP_05860881.1| thioredoxin reductase [Jonquetella anthropi E3_33 E1]
 gi|260629841|gb|EEX48035.1| thioredoxin reductase [Jonquetella anthropi E3_33 E1]
          Length = 304

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV ++GGG AG  AA  A   GA   ++   
Sbjct: 2  KYDVAIVGGGPAGVSAALYARARGAKIVVLDKN 34


>gi|260462805|ref|ZP_05811010.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Mesorhizobium opportunistum WSM2075]
 gi|259031449|gb|EEW32720.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Mesorhizobium opportunistum WSM2075]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + SY+++VIG G AG  AA  AA LGA  ALI
Sbjct: 35 DGSYNLVVIGAGPAGLTAARDAASLGAKVALI 66


>gi|238024444|ref|YP_002908676.1| FAD dependent oxidoreductase [Burkholderia glumae BGR1]
 gi|237879109|gb|ACR31441.1| FAD dependent oxidoreductase [Burkholderia glumae BGR1]
          Length = 431

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G  AA   A+ G +  ++
Sbjct: 33 DVVVIGGGFTGLSAALALAQRGVAVTVL 60


>gi|269928635|ref|YP_003320956.1| FAD dependent oxidoreductase [Sphaerobacter thermophilus DSM
          20745]
 gi|269787992|gb|ACZ40134.1| FAD dependent oxidoreductase [Sphaerobacter thermophilus DSM
          20745]
          Length = 450

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV V+G G +G  AA + A+ G   AL+
Sbjct: 24 DVCVVGAGISGTTAAIMLARRGHRVALV 51


>gi|297560418|ref|YP_003679392.1| amine oxidase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
 gi|296844866|gb|ADH66886.1| amine oxidase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
          Length = 456

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++  DV V+G G AG   A   A+ G S  ++
Sbjct: 1  MSQGLDVAVVGAGPAGLATAHALARAGRSVRVL 33


>gi|293347020|ref|XP_002726477.1| PREDICTED: retinoic acid induced 14-like isoform 2 [Rattus
            norvegicus]
 gi|149049620|gb|EDM02074.1| similar to KIAA1074 protein (predicted) [Rattus norvegicus]
          Length = 1532

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 425  RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            R+     ++ + L   N       + ++   + ER  +   +  +    +R L + L  T
Sbjct: 1000 RVQAESQKHSLRLEDRN-----QELIIECSHLKERMCQYENEKAEREVAVRQLQQELADT 1054

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             K  S +  S +   + R++ E  +      +NL  +    ++      E +Q       
Sbjct: 1055 LKKQSMSEASLEVSSRYRSSLEEEARDL--KKNLSQLRSQLQEAQDQHREAVQRAEKMQD 1112

Query: 545  YTGRQMIEAKEIK------FEEKRLIPKDFDYSSLPALSNELKEKLSI 586
            +  +  +E  + K       EE   + ++    S   LS E +EKL  
Sbjct: 1113 HLQKLELENSKFKITIKTQSEEIEQLQENL---SNGNLSEEDQEKLKK 1157


>gi|91786807|ref|YP_547759.1| L-aspartate oxidase [Polaromonas sp. JS666]
 gi|91696032|gb|ABE42861.1| L-aspartate oxidase [Polaromonas sp. JS666]
          Length = 541

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL---VREI 62
          +DV+V+G G AG  AA   A         TH+ + +   + N    G  +G +   + E 
Sbjct: 12 FDVLVVGSGLAGLTAALQLA--------PTHRVAVLTKRAMNDGSSGWAQGGIAAVMAED 63

Query: 63 DALDGLM-------GRVADAAGIQFRVLNVKKGPA 90
          D+ D  +         ++D A  +F V N  K  A
Sbjct: 64 DSFDSHVDDTLVAGAGLSDPAATRFVVENAPKTIA 98


>gi|38233252|ref|NP_939019.1| flavoprotein disulfide reductase [Corynebacterium diphtheriae
          NCTC 13129]
 gi|38199511|emb|CAE49162.1| Dihydrolipoamide dehydrogenase [Corynebacterium diphtheriae]
          Length = 490

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   +I
Sbjct: 26 IVIIGGGPAGYEAALAGAKYGAEITII 52


>gi|157831250|pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
          Length = 478

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          SYD +VIGGG  G E+A  AA+LGA  A++   
Sbjct: 20 SYDYLVIGGGSGGLESAWRAAELGARAAVVESH 52


>gi|157835045|pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
          Glutathione Complex
 gi|157836819|pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
          Trypanothione Complex
 gi|157836953|pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
          Disulfide Between Trypanothione And The Enzyme
 gi|157837042|pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
          Glutathionylspermidine Complex
          Length = 461

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          SYD +VIGGG  G E+A  AA+LGA  A++   
Sbjct: 3  SYDYLVIGGGSGGLESAWRAAELGARAAVVESH 35


>gi|163848386|ref|YP_001636430.1| dihydrolipoamide dehydrogenase [Chloroflexus aurantiacus J-10-fl]
 gi|222526310|ref|YP_002570781.1| dihydrolipoamide dehydrogenase [Chloroflexus sp. Y-400-fl]
 gi|163669675|gb|ABY36041.1| dihydrolipoamide dehydrogenase [Chloroflexus aurantiacus J-10-fl]
 gi|222450189|gb|ACM54455.1| dihydrolipoamide dehydrogenase [Chloroflexus sp. Y-400-fl]
          Length = 470

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGK 55
          M  + YD++V+G G  G  AA  AA+LG  TA++           IG +     +     
Sbjct: 1  MSEQVYDLVVLGSGPGGYVAAIRAAQLGMKTAIVEVNALGGVCLNIGCIPTKALLHSADL 60

Query: 56 GHLVREIDALD 66
             V+E     
Sbjct: 61 LEEVKEAKRFG 71


>gi|313500929|gb|ADR62295.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 416

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVI++G G AG   A ++A+ G    L+ H
Sbjct: 28 DVIILGAGAAGLMCAQLSARRGRRVLLLDH 57


>gi|307267435|ref|ZP_07548924.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917541|gb|EFN47826.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 667

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            ++  V+VIGGG AG EAA + A  G   +L 
Sbjct: 404 EKTKKVMVIGGGIAGMEAARICALRGHKVSLY 435


>gi|284050850|ref|ZP_06381060.1| succinate dehydrogenase flavoprotein subunit [Arthrospira platensis
           str. Paraca]
 gi|291568738|dbj|BAI91010.1| putative succinate dehydrogenase flavoprotein [Arthrospira
           platensis NIES-39]
          Length = 575

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 43/210 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAK----LGASTALITHKT--STIGSMSCNPAIGGLGKGHL 58
            +DVI++GGG AG  AA   A+    L  +    TH     ++ +     A         
Sbjct: 3   EHDVIIVGGGLAGSRAAVEIARTDPSLNIAVIAKTHPIRSHSVAAQGGIAATLNNVDPED 62

Query: 59  VREIDALDGLMG--RVADAAGI---------------QFRVLNVKKGPAVRGPRTQADRE 101
             E  A D + G   +AD   +                  VL   + P  R  +      
Sbjct: 63  TWEAHAFDTVKGSDYLADQDAVEILAKEAPDVIIDLEHMGVLF-SRLPDGRIAQRAFGGH 121

Query: 102 LYRL----------AMQREILS---QENLDVIQG-EVAGFNTEKNIISSIVMQ-----DN 142
            +R           A+  E+++   +  + +     V     E+     +VM        
Sbjct: 122 THRRTCYAADKTGHAILHELVNNLRRYGVHIYDEWYVMRLILEEGEAKGVVMYHILDGTI 181

Query: 143 SMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
            + R   V+  TG + R            G
Sbjct: 182 QVARAKAVMFATGGYGRAFNTTSNDFASTG 211


>gi|182440279|ref|YP_001827998.1| putative FAD-dependent oxidoreductase [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178468795|dbj|BAG23315.1| putative FAD-dependent oxidoreductase [Streptomyces griseus
          subsp. griseus NBRC 13350]
          Length = 429

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          IV+G G AG  AA   A+ G    L+  K        C   +       L+R
Sbjct: 2  IVVGAGPAGSSAAYHLARAGVDVILLE-KARFPREKVCGDGLTPRAVHQLIR 52


>gi|170701787|ref|ZP_02892721.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
 gi|170133299|gb|EDT01693.1| FAD dependent oxidoreductase [Burkholderia ambifaria IOP40-10]
          Length = 433

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S   +        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALELAERGHSVTALEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLMGR 71
            M  
Sbjct: 91 NFMPE 95


>gi|163795799|ref|ZP_02189763.1| probable N-methylproline demethylase (stahydrine utilization
           protein stcD) [alpha proteobacterium BAL199]
 gi|159178832|gb|EDP63368.1| probable N-methylproline demethylase (stahydrine utilization
           protein stcD) [alpha proteobacterium BAL199]
          Length = 681

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG EAA V+A+ G    ++
Sbjct: 391 VVVVGAGPAGLEAARVSAERGHHVIVL 417


>gi|126655372|ref|ZP_01726811.1| Geranylgeranyl reductase [Cyanothece sp. CCY0110]
 gi|126622851|gb|EAZ93556.1| Geranylgeranyl reductase [Cyanothece sp. CCY0110]
          Length = 419

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 18  VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 67

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   + Y    +RE+L 
Sbjct: 68  LPPEIIDRRVRKMKMISPSNIEVDINLDRQ---DEYIGMCRREVLD 110


>gi|167035991|ref|YP_001671222.1| hypothetical protein PputGB1_5002 [Pseudomonas putida GB-1]
 gi|166862479|gb|ABZ00887.1| HI0933 family protein [Pseudomonas putida GB-1]
          Length = 393

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVI++G G AG   A ++A+ G    L+ H
Sbjct: 5  DVIILGAGAAGLMCAQLSARRGRRVLLLDH 34


>gi|170719698|ref|YP_001747386.1| hypothetical protein PputW619_0512 [Pseudomonas putida W619]
 gi|169757701|gb|ACA71017.1| HI0933 family protein [Pseudomonas putida W619]
          Length = 410

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVI++G G AG   A ++A+ G    L+ H
Sbjct: 22 DVIILGAGAAGLMCAQLSARRGRRVLLLDH 51


>gi|110678294|ref|YP_681301.1| pyridine nucleotide-disulphide oxidoreductase, putative
           [Roseobacter denitrificans OCh 114]
 gi|109454410|gb|ABG30615.1| pyridine nucleotide-disulphide oxidoreductase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+++GGG+ G EAAAVAAKLG    L+   
Sbjct: 146 VLIVGGGYIGLEAAAVAAKLGLCVTLVEMS 175


>gi|17540238|ref|NP_500428.1| hypothetical protein F37C4.6 [Caenorhabditis elegans]
 gi|2749982|gb|AAB95172.1| Hypothetical protein F37C4.6 [Caenorhabditis elegans]
          Length = 544

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +SYD I+IGGGH G  AAA   K G    ++
Sbjct: 12 KQSYDAIIIGGGHNGLTAAAYLTKAGKKVCVL 43


>gi|148550028|ref|YP_001270130.1| hypothetical protein Pput_4826 [Pseudomonas putida F1]
 gi|148514086|gb|ABQ80946.1| HI0933 family protein [Pseudomonas putida F1]
          Length = 393

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVI++G G AG   A ++A+ G    L+ H
Sbjct: 5  DVIILGAGAAGLMCAQLSARRGRRVLLLDH 34


>gi|94985080|ref|YP_604444.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Deinococcus geothermalis DSM 11300]
 gi|94555361|gb|ABF45275.1| Thioredoxin reductase, AHPF [Deinococcus geothermalis DSM 11300]
          Length = 320

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +DVIV+G G AG  AA V         L+
Sbjct: 2  QEFDVIVVGAGPAGLNAALVLGGARRRVLLL 32


>gi|313159702|gb|EFR59059.1| FAD dependent oxidoreductase [Alistipes sp. HGB5]
          Length = 499

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG----- 56
          +   +D+IVIG G  G E   + ++ G    ++           C  +    G       
Sbjct: 1  MQEEFDIIVIGSGLGGLECGVMLSREGVGVCVVEQ---AAVPGGCLQSFRRRGHSIDTGM 57

Query: 57 HLVREIDALDGLMGRVADAAGI 78
          H V  +    G+M R  D  GI
Sbjct: 58 HYVGSMQ-QGGIMRRYFDYFGI 78


>gi|298675615|ref|YP_003727365.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288603|gb|ADI74569.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Methanohalobium evestigatum Z-7303]
          Length = 385

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 9/166 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG   AG  AA  A+  GA   L+  K     S                 E+D   
Sbjct: 4   DVLVIGASPAGLMAARNASSGGADVKLLDKKPEIGTSTHPANTFFKSMIDKTGEEVD--Q 61

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
             + +  + A I     N      V+      DR  +      ++ +   +D+    V  
Sbjct: 62  SYVIKKLNGAHIISPSGNYVS---VKSAGFFIDRSKFDTYYAEQVRNT-GVDIRTD-VEA 116

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTG--TFLRGVIHIGKLKIP 170
           +N  K+    +V       R   VV+  G  +++  ++ +  +K P
Sbjct: 117 YNVIKSGDFFVVSTSQGTFRAKVVVVADGIKSYIARLLGLNPVKYP 162


>gi|228955395|ref|ZP_04117400.1| Thioredoxin reductase [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|229082363|ref|ZP_04214826.1| Thioredoxin reductase [Bacillus cereus Rock4-2]
 gi|228700795|gb|EEL53318.1| Thioredoxin reductase [Bacillus cereus Rock4-2]
 gi|228804187|gb|EEM50801.1| Thioredoxin reductase [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
          Length = 318

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|300775286|ref|ZP_07085148.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300506026|gb|EFK37162.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 508

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          + + YD++VIG G  G  +A + AK G    ++   
Sbjct: 1  MKKEYDILVIGSGLGGLVSALILAKEGMKVCVLEKN 36


>gi|222823371|ref|YP_002574945.1| fumarate reductase, flavoprotein subunit [Campylobacter lari
          RM2100]
 gi|222538593|gb|ACM63694.1| fumarate reductase, flavoprotein subunit [Campylobacter lari
          RM2100]
          Length = 668

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 2  INRSY-DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +N  Y D +VIGGG AG  AA   AK G S  L++ 
Sbjct: 6  MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSI 41


>gi|182410003|gb|ACB88030.1| NAD(FAD)-utilizing enzyme [Streptococcus suis]
          Length = 28

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGAS 30
          + VIG G AG EAA   AK G  
Sbjct: 6  INVIGAGLAGSEAAYQIAKRGIP 28


>gi|114706126|ref|ZP_01439029.1| sarcosine oxidase, alpha subunit family protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538972|gb|EAU42093.1| sarcosine oxidase, alpha subunit family protein [Fulvimarina pelagi
           HTCC2506]
          Length = 989

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 2   INRSY---DVIVIGGGHAGCEAAAVAAKLGASTAL 33
             ++Y   DV+VIG G AG  AA  A + GA   L
Sbjct: 161 YEKAYAFCDVLVIGSGPAGLSAALCAGRSGARVIL 195


>gi|254252527|ref|ZP_04945845.1| Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide
          dehydrogenase (E3) component [Burkholderia dolosa
          AUO158]
 gi|124895136|gb|EAY69016.1| Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide
          dehydrogenase (E3) component [Burkholderia dolosa
          AUO158]
          Length = 476

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++ +D++VIG G  G  AA  AA+LG + A I
Sbjct: 1  MSKEFDIVVIGAGPGGYIAAIRAAQLGKTVACI 33


>gi|320095044|ref|ZP_08026755.1| hypothetical protein HMPREF9005_1367 [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319978023|gb|EFW09655.1| hypothetical protein HMPREF9005_1367 [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 495

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
          YDV V+GGG AG   A   A+LG S  +          + 
Sbjct: 19 YDVAVVGGGSAGSACAIRCAQLGLSVVV----IDRYAMLG 54


>gi|317488669|ref|ZP_07947209.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325831698|ref|ZP_08164915.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|316912228|gb|EFV33797.1| FAD binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486569|gb|EGC89018.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 565

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            + +DV+V+G G AG  AA  AA+ GA T +I   T
Sbjct: 68  TQDFDVVVVGAGLAGINAAEAAARNGAKTVVIERNT 103


>gi|313680048|ref|YP_004057787.1| fad dependent oxidoreductase [Oceanithermus profundus DSM 14977]
 gi|313152763|gb|ADR36614.1| FAD dependent oxidoreductase [Oceanithermus profundus DSM 14977]
          Length = 380

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R++DVIVIG G  G   A   A+ G    ++
Sbjct: 1  MERTFDVIVIGAGIVGSAVAFRLAERGLQVGVL 33


>gi|258651215|ref|YP_003200371.1| geranylgeranyl reductase [Nakamurella multipartita DSM 44233]
 gi|258554440|gb|ACV77382.1| geranylgeranyl reductase [Nakamurella multipartita DSM 44233]
          Length = 430

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DVIV+G G AG   A   A+ G    L+   T
Sbjct: 15 DVIVVGAGPAGSTLATHLARAGVDVLLLEKST 46


>gi|146320034|ref|YP_001199745.1| flavoprotein [Streptococcus suis 98HAH33]
 gi|145690840|gb|ABP91345.1| Predicted flavoprotein [Streptococcus suis 98HAH33]
          Length = 95

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D I+IG G AG  AA  ++  G  T L+         +    +  G G+ ++       D
Sbjct: 5  DTIIIGAGPAGMMAAISSSFYGKKTLLLEKNK----RLGKKLSGTGGGRCNVTNNGTLED 60

Query: 67 GLMG 70
           L G
Sbjct: 61 LLAG 64


>gi|260904219|ref|ZP_05912541.1| putative FAD-binding dehydrogenase [Brevibacterium linens BL2]
          Length = 594

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N +YD IV+G G AG  AA   +  G    ++
Sbjct: 13 NEAYDAIVVGAGLAGLVAAHELSLAGKRVLIL 44


>gi|51473648|ref|YP_067405.1| dihydrolipoamide dehydrogenase [Rickettsia typhi str. Wilmington]
 gi|51459960|gb|AAU03923.1| Diaphorase [Rickettsia typhi str. Wilmington]
          Length = 459

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 23/218 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
           + +D++VIG G AG   +  AA+LG   A I     T+G    ++ C P+   L      
Sbjct: 2   QEFDLVVIGSGPAGYTGSIRAAQLGLKVACIEKN-DTLGGTCLNIGCIPSKALLNTSKKY 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E       +G +AD      ++L+ K    +   +      +     + +  ++    +
Sbjct: 61  EETLRYFENIGIIADTKLDLQKMLSNKDKIVLDLTKGIESLFVKNKVTKIKGEAK----I 116

Query: 120 IQGEVAGFNTEKNIISSIVMQDNS--------MIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
           I   +   N E    S+I++   S        +I    +V +TG      +    + +  
Sbjct: 117 ISNNIVEVNKEHIKASNILIATGSSVIGIPTVIIDEEFIVSSTGALKLSKVPEHLIVVGG 176

Query: 172 GRMGDSPSNSLFNSFMKFDFDTG--RLKTGTPARLDGK 207
           G +G      L + + +           +     LD +
Sbjct: 177 GYIGLE----LGSVWRRLGSKVTVIEYASSIVPMLDKE 210


>gi|18978167|ref|NP_579524.1| sarcosine oxidase subunit alpha [Pyrococcus furiosus DSM 3638]
 gi|18893974|gb|AAL81919.1| sarcosine oxidase subunit alpha [Pyrococcus furiosus DSM 3638]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 36/156 (23%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+IVIGGG AG  AA  A   GA   L          +  NP +G    G LV++     
Sbjct: 116 DIIVIGGGPAGLMAAISAHDAGAKVVL----------IDENPILG----GQLVKQTHKFF 161

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           G           QF  +   K         Q   E  R       L    + + Q     
Sbjct: 162 GK--------REQFAGIRGIK-------IAQILEEEIRKRNIETFLETSAVGIFQE---- 202

Query: 127 FNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGV 161
               + I+  +  +      R   +++ TG   R +
Sbjct: 203 --GNEKIVVGVRKEKELIEFRGKAIIVATGAMERAI 236


>gi|223934168|ref|ZP_03626108.1| HI0933 family protein [Streptococcus suis 89/1591]
 gi|223897159|gb|EEF63580.1| HI0933 family protein [Streptococcus suis 89/1591]
          Length = 391

 Score = 40.7 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D I+IG G AG  AA  ++  G  T L+         +    +  G G+ ++       D
Sbjct: 5  DTIIIGAGPAGMMAAISSSFYGKKTLLLEKNK----RLGKKLSGTGGGRCNVTNNGTLED 60

Query: 67 GLMG 70
           L G
Sbjct: 61 LLAG 64


>gi|333028167|ref|ZP_08456231.1| putative 2,4-dienoyl-CoA reductase (NADPH) [Streptomyces sp.
           Tu6071]
 gi|332748019|gb|EGJ78460.1| putative 2,4-dienoyl-CoA reductase (NADPH) [Streptomyces sp.
           Tu6071]
          Length = 687

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPA---IGGLGKGHLVREID 63
           VIG G AG EAA   A+LG    L+  ++         +  P     G   + H VRE+ 
Sbjct: 391 VIGAGPAGLEAARTLARLGQEVELLEAESEPGGQFRWAARVPGKEDFGETVRHH-VRELA 449

Query: 64  ALD 66
            L 
Sbjct: 450 GLG 452


>gi|296133465|ref|YP_003640712.1| thioredoxin reductase [Thermincola sp. JR]
 gi|296032043|gb|ADG82811.1| thioredoxin reductase [Thermincola potens JR]
          Length = 310

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M++  YD+++IGGG AG  A   AA+      LI
Sbjct: 1  MMD-VYDIVIIGGGPAGITAGMYAARAALKCILI 33


>gi|284044900|ref|YP_003395240.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Conexibacter woesei DSM 14684]
 gi|283949121|gb|ADB51865.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Conexibacter woesei DSM 14684]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREID 63
          +D IV+GGG AG   A   A  G  TAL+  +         +C P+   L  G L  E  
Sbjct: 14 FDAIVVGGGPAGEVCAGKLAGAGLETALVERELIGGECSFYACMPSKALLRPGELAEETH 73

Query: 64 ALDGLMGRVADAAGIQFRVLNVK 86
           + G+     DA       L  +
Sbjct: 74 RVVGV----TDATVEPIVALRRR 92


>gi|283470797|emb|CAQ50008.1| dihydrolipoyl dehydrogenase [Staphylococcus aureus subsp. aureus
          ST398]
          Length = 473

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + YD++V+GGG AG  AA  A++LG   A++
Sbjct: 1  MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIV 34


>gi|260170776|ref|ZP_05757188.1| hypothetical protein BacD2_02842 [Bacteroides sp. D2]
 gi|315919111|ref|ZP_07915351.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692986|gb|EFS29821.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 624

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + S DV++IGGG +G  A   +A++GA T ++
Sbjct: 23 DDSVDVLIIGGGASGVTAGIQSARMGAETLIV 54


>gi|256692871|gb|ACV13200.1| 3-ketosteroid-1-dehydrogenase [Mycobacterium neoaurum]
          Length = 566

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          +DV+V+G G AG  AA  AA  G ST ++            + A  G G      E+   
Sbjct: 12 FDVVVVGSGAAGMVAALTAAHQGLSTVVV----EKAPHYGGSTARSGGGVWIPNNEVLQR 67

Query: 66 DGLMGRVADA 75
          DG+    A+A
Sbjct: 68 DGVKDTAAEA 77


>gi|302879803|ref|YP_003848367.1| HI0933 family protein [Gallionella capsiferriformans ES-2]
 gi|302582592|gb|ADL56603.1| HI0933 family protein [Gallionella capsiferriformans ES-2]
          Length = 411

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N++  V VIGGG AG  AA V ++ G    +       + ++     + G G  ++  
Sbjct: 1  MTNKT--VAVIGGGPAGLMAAEVLSREGVRVEVY----DAMPTVGRKFLMAGKGGMNITH 54

Query: 61 E 61
           
Sbjct: 55 S 55


>gi|238577171|ref|XP_002388300.1| hypothetical protein MPER_12696 [Moniliophthora perniciosa FA553]
 gi|215449456|gb|EEB89230.1| hypothetical protein MPER_12696 [Moniliophthora perniciosa FA553]
          Length = 56

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          + ++V VIGGG  G  AA   A+ G    L   + + +G +     IG  G
Sbjct: 7  KDFNVAVIGGGMCGLAAAYGLARAGVPV-LRERQQAKLGEVGARVGIGPNG 56


>gi|186472772|ref|YP_001860114.1| hypothetical protein Bphy_3945 [Burkholderia phymatum STM815]
 gi|184195104|gb|ACC73068.1| HI0933 family protein [Burkholderia phymatum STM815]
          Length = 405

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           S+D+ VIG G AG   A+VA +LG    LI H
Sbjct: 2  ESFDIAVIGAGAAGMMCASVAGQLGRRVVLIDH 34


>gi|169628736|ref|YP_001702385.1| hypothetical protein MAB_1646c [Mycobacterium abscessus ATCC 19977]
 gi|169240703|emb|CAM61731.1| Probable monooxygenase, FAD-binding [Mycobacterium abscessus]
          Length = 417

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI-------GSMSCNPAIGGLGKGHLVREI 62
           + GGG AG   A + A+ G    ++      +          S    I  LG G     +
Sbjct: 14  IAGGGPAGMMLALLLARAGIDVTVLEKHPDFLRDFRGDTVHASTLNLIDELGLGPRFAAM 73

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ- 121
              + +     D     FR+ ++ + P        A +  +   +     ++    + + 
Sbjct: 74  -PHNLVEQVTVDLGEQTFRLGDLNRLPGPHKHIAMAPQWDFLEMLATAAETEPTFRLRRS 132

Query: 122 GEVAGFNTEKNIISSI--VMQDNSM 144
            EV G     + I+ I         
Sbjct: 133 TEVTGLLRSGDRITGIEYRTASGET 157


>gi|169826045|ref|YP_001696203.1| thioredoxin reductase [Lysinibacillus sphaericus C3-41]
 gi|168990533|gb|ACA38073.1| Thioredoxin reductase [Lysinibacillus sphaericus C3-41]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|206970384|ref|ZP_03231337.1| thioredoxin-disulfide reductase [Bacillus cereus AH1134]
 gi|218230847|ref|YP_002369933.1| thioredoxin-disulfide reductase [Bacillus cereus B4264]
 gi|228981860|ref|ZP_04142155.1| Thioredoxin reductase [Bacillus thuringiensis Bt407]
 gi|229130402|ref|ZP_04259360.1| Thioredoxin reductase [Bacillus cereus BDRD-Cer4]
 gi|229147683|ref|ZP_04276026.1| Thioredoxin reductase [Bacillus cereus BDRD-ST24]
 gi|229153312|ref|ZP_04281490.1| Thioredoxin reductase [Bacillus cereus m1550]
 gi|296505575|ref|YP_003667275.1| thioredoxin reductase [Bacillus thuringiensis BMB171]
 gi|206734961|gb|EDZ52130.1| thioredoxin-disulfide reductase [Bacillus cereus AH1134]
 gi|218158804|gb|ACK58796.1| thioredoxin-disulfide reductase [Bacillus cereus B4264]
 gi|228629916|gb|EEK86567.1| Thioredoxin reductase [Bacillus cereus m1550]
 gi|228635696|gb|EEK92183.1| Thioredoxin reductase [Bacillus cereus BDRD-ST24]
 gi|228653101|gb|EEL08981.1| Thioredoxin reductase [Bacillus cereus BDRD-Cer4]
 gi|228777972|gb|EEM26244.1| Thioredoxin reductase [Bacillus thuringiensis Bt407]
 gi|296326627|gb|ADH09555.1| thioredoxin reductase [Bacillus thuringiensis BMB171]
 gi|326942949|gb|AEA18845.1| thioredoxin reductase [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 318

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|123966058|ref|YP_001011139.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9515]
 gi|123200424|gb|ABM72032.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. MIT 9515]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIGGG +G  AA + AK G  T +   K     +  C    GG     +V E D  + 
Sbjct: 4  VAVIGGGPSGSCAAEILAKSGIKTWIFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68 LMGRVADAAGIQFRVLNVK 86
              + D      ++++  
Sbjct: 58 ----IIDRKVRNMKMISPS 72


>gi|118468100|ref|YP_887079.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          smegmatis str. MC2 155]
 gi|118169387|gb|ABK70283.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          smegmatis str. MC2 155]
          Length = 471

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD++VIG G  G +AA  AAKLG S A++
Sbjct: 6  EYDLVVIGSGPGGQKAAIAAAKLGKSVAVV 35


>gi|77465530|ref|YP_355033.1| oxidoreductase [Rhodobacter sphaeroides 2.4.1]
 gi|77389948|gb|ABA81132.1| Oxidoreductase [Rhodobacter sphaeroides 2.4.1]
          Length = 531

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YD I++GGGH G    A  A+ G    ++
Sbjct: 1  MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVV 33


>gi|20808970|ref|NP_624141.1| NADH:flavin oxidoreductase [Thermoanaerobacter tengcongensis MB4]
 gi|20517635|gb|AAM25745.1| NADH:flavin oxidoreductases, Old Yellow Enzyme family
           [Thermoanaerobacter tengcongensis MB4]
          Length = 640

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V +IG G AG EAA  AA  G    +        G +
Sbjct: 381 VFIIGAGPAGLEAAYTAAVRGHKVTIYDENEELGGQL 417


>gi|172058166|ref|YP_001814626.1| succinate dehydrogenase flavoprotein subunit [Exiguobacterium
          sibiricum 255-15]
 gi|171990687|gb|ACB61609.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Exiguobacterium sibiricum 255-15]
          Length = 587

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M N++  +++IGGG AG  A   AA+ G    L +          C    G  G  +   
Sbjct: 1  MANKN--LVIIGGGLAGLMATIKAAEQGVPVKLFSLVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61 EID 63
          E D
Sbjct: 58 EGD 60


>gi|332637983|ref|ZP_08416846.1| succinate dehydrogenase/fumarate reductase, flavoprotein subunit
          [Weissella cibaria KACC 11862]
          Length = 464

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +  SYD +VIG G AG  AA  A +LG   A+   K   +G
Sbjct: 14 LQDSYDFVVIGSGAAGMTAAIQAQELGLKVAIFE-KLEALG 53


>gi|330819876|ref|YP_004348738.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia gladioli
           BSR3]
 gi|327371871|gb|AEA63226.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia gladioli
           BSR3]
          Length = 687

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVAKLRGHEVVLFEKNPE 423


>gi|325271306|ref|ZP_08137841.1| hypothetical protein G1E_00840 [Pseudomonas sp. TJI-51]
 gi|324103565|gb|EGC00877.1| hypothetical protein G1E_00840 [Pseudomonas sp. TJI-51]
          Length = 151

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVI++G G AG   A ++A+ G    L+ H
Sbjct: 5  DVIILGAGAAGLMCAQLSARRGRRVLLLDH 34


>gi|317140044|ref|XP_001817928.2| phenol 2-monooxygenase [Aspergillus oryzae RIB40]
          Length = 486

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IG G +G  AA   A+ G  T +I
Sbjct: 10 DVVIIGAGPSGLMAALWMARCGVKTRII 37


>gi|257453553|ref|ZP_05618843.1| succinate dehydrogenase, flavoprotein subunit [Enhydrobacter
          aerosaccus SK60]
 gi|257449011|gb|EEV23964.1| succinate dehydrogenase, flavoprotein subunit [Enhydrobacter
          aerosaccus SK60]
          Length = 617

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 21/31 (67%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++D +++GGG +G  A+   A+ G + A++T
Sbjct: 16 TFDAVIVGGGGSGMRASLQLARGGMNVAVLT 46


>gi|302537966|ref|ZP_07290308.1| squalene/phytoene dehydrogenase [Streptomyces sp. C]
 gi|302446861|gb|EFL18677.1| squalene/phytoene dehydrogenase [Streptomyces sp. C]
          Length = 460

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
          +VIGGG AG  AA   A  G    L+  +          P +GGL       ++   +G 
Sbjct: 9  VVIGGGLAGVTAALELADAGLRVTLLEGR----------PRLGGLAFSFKRGDLTVDNGQ 58

Query: 69 MGRVADAAGIQFRV-LNVKKGPAVRGPRTQAD 99
             +       +R  L+   G A+   + + D
Sbjct: 59 HVYL--RCCTAYRWFLDRVDGAALAPLQDRLD 88


>gi|254520051|ref|ZP_05132107.1| thioredoxin reductase [Clostridium sp. 7_2_43FAA]
 gi|226913800|gb|EEH99001.1| thioredoxin reductase [Clostridium sp. 7_2_43FAA]
          Length = 556

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 126/401 (31%), Gaps = 104/401 (25%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +N+ YD+I+IGGG AG  A   A +   +T +I                          E
Sbjct: 1   MNKIYDLIIIGGGPAGLSAGLYAGRARLNTLII--------------------------E 34

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGP-RTQADRELYRLAMQREILSQENLDVI 120
            +   G +   A+   + +  +    GP +    RTQA                EN  V 
Sbjct: 35  KEHTGGQINSTAEI--VNYPGIVKTTGPNLTSDMRTQA----------------ENFGVK 76

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                  + + +    I+  +N  I+   +++ TG   R +   G+++   GR     + 
Sbjct: 77  FQTADVIDVDLSGDVKIIKTNNGEIQGRAIIIATGASPRKLGFPGEIEY-GGRGVAYCAT 135

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT-NRQIE 239
                F   +                 T    K      +        + DK+  N+ IE
Sbjct: 136 CDGEFFKDLEVLVIGAGYAAAEEAIYLTRFAKKVIIVAREPEFTCAKSIGDKVKANKNIE 195

Query: 240 CGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEG 299
               R N E    I +++  S     ++ +    Y P  ED                   
Sbjct: 196 ---IRFNTEVVEAIGDDVLRSVKLINNVTNERSEYFPPKEDGTF---------------- 236

Query: 300 LNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKK 359
                    GI   +  E Q +  +     +K+ + R GY +  +          +ET  
Sbjct: 237 ---------GIFVFVGYEPQTKVFK-----DKIEMDRYGYILTNE---------NMET-N 272

Query: 360 ISGLFLAG--------QINGTTGYEEAAAQGLVAGINSARK 392
           I G++ AG        Q+        A A G +A  ++ R 
Sbjct: 273 IKGVYAAGDLRPKLLRQV------VTAVADGAIAATDAERY 307


>gi|303270851|ref|XP_003054787.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462761|gb|EEH60039.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 687

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +  YDV+VIG G  G  AA++ AK G S  L    
Sbjct: 78  DEEYDVVVIGSGIGGLSAASLLAKYGYSVKLFESH 112


>gi|254439769|ref|ZP_05053263.1| dihydrolipoamide dehydrogenase [Octadecabacter antarcticus 307]
 gi|198255215|gb|EDY79529.1| dihydrolipoamide dehydrogenase [Octadecabacter antarcticus 307]
          Length = 472

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 25/165 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGKGHL 58
           + +D+IVIG G  G  AA   A+LG    +I       I    G +     +      HL
Sbjct: 7   KQFDMIVIGAGPGGYVAAIRGAQLGLKVCVIERESLGGICLNWGCIPTKAMLRSAEVFHL 66

Query: 59  VREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           +           G   D       V+   +G A +                  +L +   
Sbjct: 67  MHRAKEFGLSADGIKFDLPA----VVKRSRGVAGQLSGG-----------IGHLLKKNKC 111

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTFLRGV 161
            VI GE     T K  +S +        +    +V+ TG   R +
Sbjct: 112 SVIMGEAK--ITTKGKVS-VKTDKGVEELTAKNIVVATGARAREL 153


>gi|218900278|ref|YP_002448689.1| thioredoxin-disulfide reductase [Bacillus cereus G9842]
 gi|228903630|ref|ZP_04067751.1| Thioredoxin reductase [Bacillus thuringiensis IBL 4222]
 gi|218540991|gb|ACK93385.1| thioredoxin-disulfide reductase [Bacillus cereus G9842]
 gi|228856059|gb|EEN00598.1| Thioredoxin reductase [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 35


>gi|167627195|ref|YP_001677695.1| succinate dehydrogenase [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|167597196|gb|ABZ87194.1| Succinate dehydrogenase [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
          Length = 597

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           + +D IVIG G AG  A+   ++ G  TA+++
Sbjct: 5  TQMFDAIVIGAGGAGLRASFQLSQSGFKTAVVS 37


>gi|86359633|ref|YP_471525.1| oxidoreductase protein [Rhizobium etli CFN 42]
 gi|86283735|gb|ABC92798.1| probable oxidoreductase protein [Rhizobium etli CFN 42]
          Length = 427

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 16/91 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-------------NPAIGGL 53
           DV ++GGG+ G  AA   A+ G+   L+  K    G                 N   G L
Sbjct: 31  DVAIVGGGYTGLSAALHLAEAGSKVVLLEAKEIGFGGAGRNVGLINAGMWVMPNDLPGVL 90

Query: 54  GKGHLVREIDALDG---LMGRVADAAGIQFR 81
           G+ H  R ++ L     L+  + D  GI   
Sbjct: 91  GQVHGERLLELLGNAPKLVMELIDKHGIACE 121


>gi|83765783|dbj|BAE55926.1| unnamed protein product [Aspergillus oryzae]
          Length = 583

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IG G +G  AA   A+ G  T +I
Sbjct: 10 DVVIIGAGPSGLMAALWMARCGVKTRII 37


>gi|75759653|ref|ZP_00739737.1| Thioredoxin reductase [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|228910985|ref|ZP_04074793.1| Thioredoxin reductase [Bacillus thuringiensis IBL 200]
 gi|228968250|ref|ZP_04129248.1| Thioredoxin reductase [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|74492849|gb|EAO55981.1| Thioredoxin reductase [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|228791423|gb|EEM39027.1| Thioredoxin reductase [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228848640|gb|EEM93486.1| Thioredoxin reductase [Bacillus thuringiensis IBL 200]
          Length = 321

 Score = 40.3 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST ++
Sbjct: 7  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLML 38


>gi|330827743|ref|YP_004390695.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Aeromonas veronii B565]
 gi|328802879|gb|AEB48078.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Aeromonas veronii B565]
          Length = 394

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 49/180 (27%), Gaps = 32/180 (17%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  DV+VIG G AG   AA A   G S  +                I G G+ +      
Sbjct: 2   KQVDVVVIGAGAAGLMCAAQAGYRGRSVLV----LDNAKKPGRKILISGGGRCNFTN--- 54

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ-------ADRE--LYRLAMQREILSQ 114
                       AG    +            R          DR    Y      ++   
Sbjct: 55  ----------HQAGAHAYLSENPHFSKSALARYTQQDFIDLVDRHGVNYHERTLGQLF-- 102

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR--CSTVVLTTGTFLRGVIHIGKLKIPAG 172
             L+  +  V    TE    + + +Q  + I            T  +G I    L +  G
Sbjct: 103 -CLESAKDIVDVLLTE-CDWAGVTLQFQTEILTVSKQDEGFVLTTSKGEIGCHSLVVATG 160


>gi|323357046|ref|YP_004223442.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Microbacterium testaceum
          StLB037]
 gi|323273417|dbj|BAJ73562.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase (E3) component [Microbacterium testaceum
          StLB037]
          Length = 486

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            R   V ++GGG  G EAA  AA+LGA   L+
Sbjct: 8  FERKQSVAIVGGGPGGYEAALSAAQLGADVTLV 40


>gi|299535532|ref|ZP_07048853.1| succinate dehydrogenase flavoprotein subunit [Lysinibacillus
          fusiformis ZC1]
 gi|298728732|gb|EFI69286.1| succinate dehydrogenase flavoprotein subunit [Lysinibacillus
          fusiformis ZC1]
          Length = 584

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +IV+GGG AG  A   AA++G    L +          C    G  G  +   E D
Sbjct: 6  IIVVGGGLAGLMATIKAAEVGTEVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|303319027|ref|XP_003069513.1| squalene monooxygenase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109199|gb|EER27368.1| squalene monooxygenase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320041110|gb|EFW23043.1| squalene epoxidase [Coccidioides posadasii str. Silveira]
          Length = 485

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           D+++IG G AGC  A      G S  L+         I      P    A+  LG  H +
Sbjct: 36  DIVIIGAGIAGCSLAVALGNQGRSVLLLEKSLKEPDRIVGELLQPGGVLALEKLGLRHCL 95

Query: 60  REIDALDGLMGRVADA---AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
            +IDA+  L   V        I F + + +K    R          + + ++   +S  N
Sbjct: 96  EDIDAVKVLGYNVIYHGVPVRIDFPMDSNEKLFEGRS----FHHGRFIMKLREAAMSTPN 151

Query: 117 LDVIQGEVAGFN--TEKNIISSIVMQDNSM---IRCSTVVLTTGTFLRGV 161
           + V++ +       T    +  +    N           V+  G      
Sbjct: 152 VTVVETKAVSLVKSTHGEGVLGVECLTNGKKDFFFAPLTVVADGYNSAFR 201


>gi|258510903|ref|YP_003184337.1| hypothetical protein Aaci_0908 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477629|gb|ACV57948.1| HI0933 family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 426

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 140/438 (31%), Gaps = 76/438 (17%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR-----E 61
           +V+VIGGG AG  AA  A + GA   L+         +    AI G G+ ++       E
Sbjct: 3   NVLVIGGGPAGLMAAIAAREAGARVLLV----EKGDRLGRKLAISGGGRCNVTNAKPLPE 58

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ-ADR-------ELYRLAMQREILS 113
           +        +   ++  +F   ++ +     G   +  DR       +  R  ++  +  
Sbjct: 59  LMQHVLGNPKFLYSSFHRFSNEDIIRFFEGLGVALKEEDRGRMFPVSDDARTVVRAVVRH 118

Query: 114 QENLDV---IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
            E L V   +   V     E+     I  +   +I  +  V+ TG      +        
Sbjct: 119 MERLGVEVRLHTPVVRILAEERRFVGIETERGEVIPAAACVIATG---GASVPQTGSTGD 175

Query: 171 AGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIW---------DKTEKQFADE 221
             R   S  +++   +      T         RL G ++                +  D 
Sbjct: 176 GYRFAASVGHTIVPPYPTAVPITSDHPWIRDRRLQGLSLYNIELSIFRGDKLLTVEPGDL 235

Query: 222 RLIPF----------SFMTDKITNRQIECGIT--------RTNLETHRIIMENIKHSAIY 263
               F          S         Q    +T        RT  +   +     +     
Sbjct: 236 VFTHFGLSGPAALRASHYVTVSLREQPGAKLTASIDVRPDRTFEDWMALFKSARERHPKR 295

Query: 264 SGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLE---PEGLNTDVVYPNGISTALPEEIQH 320
               +  G      + D   R      H+  +E   P    +       +S AL   +  
Sbjct: 296 RLRTELEG-----HVPD---RLAAFVLHEAQVEGEVPLAQASHE-SLMRVSRALK-RLAI 345

Query: 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING----TTGYE 376
               T+P LEK  +   G +++   I+PK    T+++K  +GL+ AG++      T GY 
Sbjct: 346 PVTGTLP-LEKATVTGGGVSVKE--IDPK----TMQSKLCAGLYFAGEVMDVHAHTGGYN 398

Query: 377 EAAA--QGLVAGINSARK 392
              A   G  AG  +AR 
Sbjct: 399 ITIAFSTGHTAGSEAARY 416


>gi|226357316|ref|YP_002787056.1| dihydrolipoyl dehydrogenase (E3 component of alpha-ketoacid
          dehydrogenase complexes) [Deinococcus deserti VCD115]
 gi|226319306|gb|ACO47302.1| putative dihydrolipoyl dehydrogenase (E3 component of
          alpha-ketoacid dehydrogenase complexes) [Deinococcus
          deserti VCD115]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 2  INRSYD--VIVIGGGHAGCEAAAVAAKLGASTAL 33
          + +SYD  V+VIG G  G  AA  AA+LG   A 
Sbjct: 1  MTKSYDFDVLVIGAGPGGYHAAIRAAQLGLKVAC 34


>gi|169829493|ref|YP_001699651.1| succinate dehydrogenase flavoprotein subunit [Lysinibacillus
          sphaericus C3-41]
 gi|168993981|gb|ACA41521.1| Succinate dehydrogenase flavoprotein subunit [Lysinibacillus
          sphaericus C3-41]
          Length = 584

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +IV+GGG AG  A   AA++G    L +          C    G  G  +   E D
Sbjct: 6  IIVVGGGLAGLMATIKAAEVGTEVDLFSLVPVKRSHSVCAQG-GINGAVNTKGEGD 60


>gi|115752588|ref|XP_782447.2| PREDICTED: similar to Dihydrolipoyl dehydrogenase, mitochondrial
           precursor (Dihydrolipoamide dehydrogenase)
           [Strongylocentrotus purpuratus]
 gi|115929988|ref|XP_001194682.1| PREDICTED: similar to Dihydrolipoyl dehydrogenase, mitochondrial
           precursor (Dihydrolipoamide dehydrogenase)
           [Strongylocentrotus purpuratus]
          Length = 513

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 35/194 (18%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
              D++VIG G  G  AA  AA+LG  T  +     T+G    ++ C P+   L   HL 
Sbjct: 43  EEQDLVVIGSGPGGYVAAIKAAQLGLKTTCVEKN-DTLGGTCLNVGCIPSKALLNNSHLY 101

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
             + A      R  D   I+  +      P + G ++ A + L        +  Q ++  
Sbjct: 102 H-MAASKDFKSRGIDVGDIKLNL------PKMMGQKSDAVKGLTNGVAH--LFKQNSVTR 152

Query: 120 IQG--------EVAGFNTEKNIISSIVMQD-------------NSMIRCSTVVLTTGTFL 158
           IQG        EVA  + +  I   +  ++                +   TVV +TG   
Sbjct: 153 IQGHGKVMGPNEVAVLHPDGKIKEVVKTKNILIATGSEVTPFPGIEVDEKTVVSSTGALS 212

Query: 159 RGVIHIGKLKIPAG 172
              +    + I  G
Sbjct: 213 LERVPDHMVLIGGG 226


>gi|116748620|ref|YP_845307.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697684|gb|ABK16872.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 557

 Score = 40.3 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           + +VIGGG AG  AA   A  G    L+  KT  +G M
Sbjct: 146 NAMVIGGGIAGMTAALALANRGYQVYLVE-KTDQLGGM 182


>gi|332828771|gb|EGK01463.1| dihydrolipoyl dehydrogenase [Dysgonomonas gadei ATCC BAA-286]
          Length = 450

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YD+ +IGGG AG  AA  AA  G  T L    
Sbjct: 3  YDIAIIGGGPAGYTAAERAAANGLKTILFEKN 34


>gi|312137433|ref|YP_004004770.1| 2,3-di-o-geranylgeranylglyceryl phosphate reductase
          [Methanothermus fervidus DSM 2088]
 gi|311225152|gb|ADP78008.1| 2,3-di-O-geranylgeranylglyceryl phosphate reductase
          [Methanothermus fervidus DSM 2088]
          Length = 393

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
          DV+V+G G AG  AA  AA+ GA   L       +  +  
Sbjct: 5  DVLVVGAGPAGSIAARNAAENGAEVIL----IDKMSEIGT 40


>gi|282901749|ref|ZP_06309664.1| Geranylgeranyl reductase [Cylindrospermopsis raciborskii CS-505]
 gi|281193366|gb|EFA68348.1| Geranylgeranyl reductase [Cylindrospermopsis raciborskii CS-505]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 5   VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D      ++++              ++E Y    +RE+L 
Sbjct: 55  LPADIIDRRVRNMKMISPS---NREVDINLINQEEYIGMCRREVLD 97


>gi|229489632|ref|ZP_04383495.1| flavoprotein disulfide reductase [Rhodococcus erythropolis SK121]
 gi|229323729|gb|EEN89487.1| flavoprotein disulfide reductase [Rhodococcus erythropolis SK121]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA VAA+ GA+  L+
Sbjct: 4  IVIIGGGPAGYEAALVAAQHGATVTLV 30


>gi|227549720|ref|ZP_03979769.1| dihydrolipoamide dehydrogenase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078216|gb|EEI16179.1| dihydrolipoamide dehydrogenase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 472

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGH 57
           N  +DV+V+G G  G  AA  AA+LG   A++  K        +G +     I      H
Sbjct: 5   NEHFDVVVLGAGPGGYVAAIRAAQLGKKVAVVEKKYWGGVCLNVGCIPSKSLIKNAEVAH 64

Query: 58  L-VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           +  RE            D A    R   V +         +    ++ L  + EI     
Sbjct: 65  IFTREAKTFGIKGDVEFDYADAHERSRKVSE---------RIVGGVHYLMKKNEITEIHG 115

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153
           L   +       TE +     V  DN +I   +VV T
Sbjct: 116 LGTFKDASTIEITEGDDAGKTVTFDNCIIATGSVVRT 152


>gi|226305568|ref|YP_002765528.1| oxidoreductase [Rhodococcus erythropolis PR4]
 gi|226184685|dbj|BAH32789.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
          Length = 485

 Score = 40.3 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA VAA+ GA+  L+
Sbjct: 22 IVIIGGGPAGYEAALVAAQHGATVTLV 48


>gi|313123495|ref|YP_004033754.1| fumarate reductase, flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
 gi|312280058|gb|ADQ60777.1| Fumarate reductase, flavoprotein subunit [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
 gi|325684326|gb|EGD26496.1| fumarate reductase subunit A [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 465

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++N SYD++VIG G  G  AA  A +LG S A+    
Sbjct: 13 LVNPSYDLVVIGAGGTGLSAALQAHELGVSVAVFEKN 49


>gi|302389716|ref|YP_003825537.1| HI0933 family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200344|gb|ADL07914.1| HI0933 family protein [Thermosediminibacter oceani DSM 16646]
          Length = 415

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 13/76 (17%)

Query: 326 IPGLEK-VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYE------EA 378
           I  +EK   + R G +++   I+ +    T+E+K I GL+ AG++    G+        A
Sbjct: 344 IGCMEKEAIVTRGGVSVKE--IDAR----TMESKIIKGLYFAGEVIDVDGFTGGYNLQAA 397

Query: 379 AAQGLVAGINSARKSN 394
            + G +AG+N+A    
Sbjct: 398 FSTGYLAGVNAASNDR 413


>gi|227818552|ref|YP_002822523.1| FAD dependent oxidoreductase [Sinorhizobium fredii NGR234]
 gi|227337551|gb|ACP21770.1| putative FAD dependent oxidoreductase [Sinorhizobium fredii NGR234]
          Length = 397

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPS 179
           ++ EV   N E + I S+  +    I C T+V T+GT  + V  +  L IP     +   
Sbjct: 181 VEDEVVAVNREDDRIVSVTTRSGQTIGCGTMVNTSGTNGKKVARLAGLDIP----VEPRR 236

Query: 180 NSLF--NSFMKFDFDTGRL--KTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN 235
            SLF  +     +   G     TG   R +GK  +     K   +     F  M D+   
Sbjct: 237 RSLFVVDCRTPLEGRVGLTIDPTGVFFRPEGKFYLMGTYPKHDPEVDPNDFDVMHDEFDE 296

Query: 236 RQIE 239
               
Sbjct: 297 EIWP 300


>gi|239624335|ref|ZP_04667366.1| BfmBC [Clostridiales bacterium 1_7_47_FAA]
 gi|239520721|gb|EEQ60587.1| BfmBC [Clostridiales bacterium 1_7_47FAA]
          Length = 462

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
          +   ++++VIG G  G EAA   AK G   AL+       G+     C P    L    L
Sbjct: 1  MADRWNLVVIGAGPGGYEAAVEGAKKGMKVALVE-NRELGGTCLNRGCIPTKTILHTAEL 59

Query: 59 VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            E+ A    +G   + A +   ++  +K   ++  R   
Sbjct: 60 YHELQA-GPSIGLRTEQAAVDMDLVQQRKEEVLKQLRAGI 98


>gi|242277885|ref|YP_002990014.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio salexigens DSM 2638]
 gi|242120779|gb|ACS78475.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Desulfovibrio salexigens DSM 2638]
          Length = 305

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          YD++++GGG AG  A   AA+ G    ++    
Sbjct: 7  YDMVIVGGGPAGMTAGIYAARAGLKAVILEENI 39


>gi|198437368|ref|XP_002126549.1| PREDICTED: similar to Pipox-prov protein [Ciona intestinalis]
          Length = 393

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          S+DVIV+G G  G   A   AK G +T +I  
Sbjct: 3  SFDVIVVGAGVIGSCTAYQLAKSGVNTLMIEQ 34


>gi|254383908|ref|ZP_04999255.1| dihydrolipoyl dehydrogenase [Streptomyces sp. Mg1]
 gi|194342800|gb|EDX23766.1| dihydrolipoyl dehydrogenase [Streptomyces sp. Mg1]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          ++  +DV+V+G G  G  AA  AA+LG   A++  K        +G +     +      
Sbjct: 1  MSEHFDVVVLGAGPGGYVAAIRAAQLGRRVAVVEEKYWGGVCLNVGCIPTKALLRNAELA 60

Query: 57 HL-VREIDALD 66
          HL   E     
Sbjct: 61 HLFTHEAKTFG 71


>gi|154496925|ref|ZP_02035621.1| hypothetical protein BACCAP_01218 [Bacteroides capillosus ATCC
           29799]
 gi|150273749|gb|EDN00866.1| hypothetical protein BACCAP_01218 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 42/150 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD+I+IG G AG  A   A   G  T ++                          E   +
Sbjct: 2   YDIIIIGAGPAGISAGIYAVSRGKRTLIL--------------------------EKAQV 35

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
            G++G+V+      +  +  ++  A    R           M+ + L Q  ++++  +V 
Sbjct: 36  GGIIGKVS--TVTHYTAIERQETGATFASR-----------MKEQAL-QAGVEIVYADVT 81

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           G         S+            ++L  G
Sbjct: 82  GVTLTG-ETKSVATDKG-TYEAKRIILANG 109


>gi|78186323|ref|YP_374366.1| gamma-carotene desaturase [Chlorobium luteolum DSM 273]
 gi|78166225|gb|ABB23323.1| gamma-carotene desaturase [Chlorobium luteolum DSM 273]
          Length = 639

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 13/61 (21%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           + +VIGGG AG  AA   A  G    L+   T          ++GG   G    EIDAL 
Sbjct: 57  NCVVIGGGLAGISAAMELASKGMQVTLVESST----------SLGGKLTG---WEIDALG 103

Query: 67  G 67
            
Sbjct: 104 S 104


>gi|83952408|ref|ZP_00961139.1| sarcosine oxidase, alpha subunit family protein [Roseovarius
           nubinhibens ISM]
 gi|83836081|gb|EAP75379.1| sarcosine oxidase, alpha subunit family protein [Roseovarius
           nubinhibens ISM]
          Length = 981

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           D++VIG G +G  AA  AA+ GA   L
Sbjct: 170 DLLVIGAGPSGLAAALTAARSGARVIL 196


>gi|126463933|ref|YP_001045046.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105744|gb|ABN78274.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17029]
          Length = 531

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YD I++GGGH G    A  A+ G    ++
Sbjct: 1  MSPQYDAIIVGGGHNGLTCGAYLARAGVKVLVV 33


>gi|167741526|ref|ZP_02414300.1| oxidoreductase [Burkholderia pseudomallei 14]
 gi|167827095|ref|ZP_02458566.1| oxidoreductase [Burkholderia pseudomallei 9]
 gi|167897167|ref|ZP_02484569.1| oxidoreductase [Burkholderia pseudomallei 7894]
 gi|226196459|ref|ZP_03792040.1| FAD dependent oxidoreductase [Burkholderia pseudomallei Pakistan
          9]
 gi|254198863|ref|ZP_04905281.1| oxidoreductase [Burkholderia pseudomallei S13]
 gi|169657035|gb|EDS88429.1| oxidoreductase [Burkholderia pseudomallei S13]
 gi|225931335|gb|EEH27341.1| FAD dependent oxidoreductase [Burkholderia pseudomallei Pakistan
          9]
          Length = 430

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          D+ VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DICVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|134114431|ref|XP_774144.1| hypothetical protein CNBG4440 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256777|gb|EAL19497.1| hypothetical protein CNBG4440 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 17/213 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++GGG AG   A   +K G  + +   ++   G +     +        +R +D L G
Sbjct: 12  VLILGGGLAGTCFALALSKSGIRSTIFELRSDP-GDIGGALMLAPNA----LRVLDKLVG 66

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY---RLAMQREILSQENLDVIQGEV 124
           +   + D      ++    +     G   Q D+E +    L ++R IL ++ L+      
Sbjct: 67  VYEEIKDNGFSFEKINFYSEDGMKLGGFAQGDQERWGYKALRIKRPILHKKLLEACAAS- 125

Query: 125 AGFNTEKNIISSIVM--QDNSMIRCSTVVLTTGTFLRGV--IHIGKLKIPAGRMGDSPSN 180
              + +  +I   +   +   MI       T+G  L G   IH          + D P+ 
Sbjct: 126 DKIDFKYGMIWKSIDESETGVMIHFEDGTRTSGDILVGCDGIHSRLRNYL---LPDPPTP 182

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK 213
           +          +  R     P  +     I+ +
Sbjct: 183 TYAG-LAGIGGEVSRSSLDIPPYMTLPAFIYTR 214


>gi|311108173|ref|YP_003981026.1| FAD dependent oxidoreductase [Achromobacter xylosoxidans A8]
 gi|310762862|gb|ADP18311.1| FAD dependent oxidoreductase family protein 10 [Achromobacter
           xylosoxidans A8]
          Length = 428

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 7/163 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-----PAIGGLGKGHLVRE 61
           DV+++G G  G   A   ++LG    ++  +    G+   N     P I    K  L R 
Sbjct: 34  DVVIVGAGITGLSTALHLSELGLRVCVLDAQEPGWGASGRNGGQVIPGIKHDPKAILARY 93

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             AL   + ++  +A      L  +   A    R    +  +       +  +    + +
Sbjct: 94  GKALGEPLLQMVASASDAVFELIERHAIACHAMRAGWIQPAHSPRALETVSDRAQQWLDR 153

Query: 122 GEVAGFNTEKNIISSIVMQ--DNSMIRCSTVVLTTGTFLRGVI 162
           G       +  + + +         I      +   ++ RG++
Sbjct: 154 GAAVEMLNKDAVSARLGTDRFLGGWIDRRAGSIQPLSYTRGLV 196


>gi|300868958|ref|ZP_07113562.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333025|emb|CBN58754.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 566

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVI+IG GH G   AA   K G S  L+
Sbjct: 2  ETYDVIIIGAGHNGLTCAAYLLKAGYSVLLL 32


>gi|239835029|ref|ZP_04683357.1| FAD dependent oxidoreductase [Ochrobactrum intermedium LMG 3301]
 gi|239823092|gb|EEQ94661.1| FAD dependent oxidoreductase [Ochrobactrum intermedium LMG 3301]
          Length = 448

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV ++G G+AG  AA   A+ G    +   +    G+ S N   GG   G++
Sbjct: 31 DVAIVGAGYAGLCAALYLARAGRKVQVFEREQLGFGASSRN---GGFTSGNI 79


>gi|254423720|ref|ZP_05037438.1| L-aspartate oxidase [Synechococcus sp. PCC 7335]
 gi|196191209|gb|EDX86173.1| L-aspartate oxidase [Synechococcus sp. PCC 7335]
          Length = 559

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 42/190 (22%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHK-------------------TSTIGSMSC 46
           +DV+V+GGG AG  +A           L+T                          ++  
Sbjct: 11  FDVLVVGGGAAGLYSALCL-PTHLKVGLLTKDTLALSASDWAQGGIAAAIAPDDSTTLHI 69

Query: 47  NPAIG-------GLGKGHLVREIDAL-DGLM--GRVADAAGIQFRVLNVKKGPAVRGPRT 96
           +  +              LV E     + L+  G   D +G Q  +         R    
Sbjct: 70  DDTLRAGAGLCEPEAVELLVEEARQCINSLVDLGVAFDRSGQQLAMTLEAAHSRKRVLHA 129

Query: 97  QADRELYRL--AMQREILSQENLDVI-QGEVAGFNTEKNIISSIVM--------QDNSMI 145
            AD   + +   + + +LSQ+N+ V  Q        E  +   + +         D   +
Sbjct: 130 -ADTTGHAIVLTLAQRVLSQKNIQVFDQSFALDLWIEAGVCKGVCLSQINREGASDIRWL 188

Query: 146 RCSTVVLTTG 155
               VVL TG
Sbjct: 189 PAQAVVLATG 198


>gi|209886855|ref|YP_002290712.1| mercuric reductase [Oligotropha carboxidovorans OM5]
 gi|209875051|gb|ACI94847.1| mercuric reductase [Oligotropha carboxidovorans OM5]
          Length = 484

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  YD++V+G G AG  AA  AA  GA  AL+
Sbjct: 18 NDQYDLVVVGAGSAGFSAAITAAGQGAQVALV 49


>gi|154623243|emb|CAM34371.1| putative non-heme halogenase [Streptomyces tendae]
          Length = 462

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          V+VIGGG AG  AA + A+ G    L+   T
Sbjct: 9  VLVIGGGPAGSTAAGLLARQGIEVTLLEKST 39


>gi|73539912|ref|YP_294432.1| FAD dependent oxidoreductase [Ralstonia eutropha JMP134]
 gi|72117325|gb|AAZ59588.1| FAD dependent oxidoreductase [Ralstonia eutropha JMP134]
          Length = 402

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S+DV ++G G AG  AA +  + GA  AL+
Sbjct: 5  QSFDVAILGAGLAGRLAAWLLVRQGARVALV 35


>gi|34496789|ref|NP_901004.1| oxidoreductase [Chromobacterium violaceum ATCC 12472]
 gi|34102644|gb|AAQ59009.1| oxidoreductase [Chromobacterium violaceum ATCC 12472]
          Length = 429

 Score = 40.3 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV V+GGG AG  AA    + G S  L+       G+   N
Sbjct: 34 DVCVVGGGLAGLSAALNLREKGFSVILLEGSHVGFGASGRN 74


>gi|332709977|ref|ZP_08429933.1| putative dehydrogenase/flavoprotein [Lyngbya majuscula 3L]
 gi|332351348|gb|EGJ30932.1| putative dehydrogenase/flavoprotein [Lyngbya majuscula 3L]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++  YDV ++GGG AGC  A    + G S  L+ 
Sbjct: 31 LSSEYDVAIVGGGPAGCATALALKQQGISKILVV 64


>gi|332523100|ref|ZP_08399352.1| dihydrolipoyl dehydrogenase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314364|gb|EGJ27349.1| dihydrolipoyl dehydrogenase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 586

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD++VIGGG AG  AA   A+LG   A++
Sbjct: 125 LADNEYDIVVIGGGPAGYYAAIRGAQLGGKIAIV 158


>gi|313115916|ref|ZP_07801343.1| thioredoxin-disulfide reductase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621680|gb|EFQ05208.1| thioredoxin-disulfide reductase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 309

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 29/162 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD++V+GGG  G  AA  AA+ G  T ++  K S  G M+            L  +I
Sbjct: 4   NHVYDMLVVGGGPGGYTAALYAARAGLDTIVLE-KLSAGGQMA------------LTEQI 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D   G      +     F +    +  A R       R  Y   ++ ++ +   L     
Sbjct: 51  DNYPGF-----EDGIDGFSLAEKMQKQAERFGA----RSEYAEVLRMDLTAVPKL----- 96

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                +       ++V+   +  R   V   T    RGV + 
Sbjct: 97  --VETSEGIFRGKTVVLATGADPRTLGVAGETELLGRGVAYC 136


>gi|270290471|ref|ZP_06196696.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Pediococcus acidilactici 7_4]
 gi|270281252|gb|EFA27085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Pediococcus acidilactici 7_4]
          Length = 395

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  A +    T LI
Sbjct: 1  MRKEYDVLIVGGGPGGLTAAIYAGRAELKTLLI 33


>gi|257466057|ref|ZP_05630368.1| thioredoxin reductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917212|ref|ZP_07913452.1| thioredoxin reductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691087|gb|EFS27922.1| thioredoxin reductase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPA 49
          + + YDVI++GGG AG  A     +  A T ++           HK         +P+
Sbjct: 1  MEKIYDVIIVGGGPAGLTAGIYLGRGKARTLILEKANVGALLSAHKIDNYPGFLNSPS 58


>gi|257452150|ref|ZP_05617449.1| thioredoxin reductase [Fusobacterium sp. 3_1_5R]
 gi|317058695|ref|ZP_07923180.1| thioredoxin reductase [Fusobacterium sp. 3_1_5R]
 gi|313684371|gb|EFS21206.1| thioredoxin reductase [Fusobacterium sp. 3_1_5R]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNPA 49
          + + YDVI++GGG AG  A     +  A T ++           HK         +P+
Sbjct: 1  MEKIYDVIIVGGGPAGLTAGIYLGRGKARTLILEKANVGALLSAHKIDNYPGFLNSPS 58


>gi|256752842|ref|ZP_05493682.1| HI0933 family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748267|gb|EEU61331.1| HI0933 family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 18/90 (20%)

Query: 314 LPEEIQHQFIRTIPGLE-KVNIIRP-------GYAIEYDYINPKELFPTLETKKISGLFL 365
           + +  + + + ++  L  KV  +RP       G  +    INP     T+E+K I GLF 
Sbjct: 321 ITKNERKKLVNSLKNLTFKVKDLRPIREAIVTGGGVSIKEINP----STMESKIIKGLFF 376

Query: 366 AGQINGTTGYEE------AAAQGLVAGINS 389
           AG+I    G+        A + G VAGIN+
Sbjct: 377 AGEIIDVDGFTGGFNLQIAFSTGYVAGINA 406


>gi|298528807|ref|ZP_07016211.1| methyl-viologen-reducing hydrogenase delta subunit
          [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512459|gb|EFI36361.1| methyl-viologen-reducing hydrogenase delta subunit
          [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1168

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          M  ++  V VIGGG AG +AA   A  G  T L+       G M+   +I      
Sbjct: 1  MQQKTGAVAVIGGGIAGIQAALDLADSGFYTYLVEKSPGLGGIMAQLDSIAPTSDC 56


>gi|183221849|ref|YP_001839845.1| 2,4-dienoyl-CoA reductase (NADPH) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911920|ref|YP_001963475.1| 2,4-dienoyl-CoA reductase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776596|gb|ABZ94897.1| 2,4-dienoyl-CoA reductase (NADPH) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780271|gb|ABZ98569.1| 2,4-dienoyl-CoA reductase (NADPH) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 664

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V+VIG G AG EAA  A +LG    +   K   IG
Sbjct: 375 VLVIGTGPAGLEAARAAKELGHDVTIFE-KRDQIG 408


>gi|220923556|ref|YP_002498858.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
 gi|219948163|gb|ACL58555.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060]
          Length = 432

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+GGG+ G  AA   A+ G    ++   T   G+   N  +         + I A  
Sbjct: 32  DVAVVGGGYTGLSAALALAERGERPVVLEANTIGWGASGRNGGVVSAKFRLSFQAIAAAH 91

Query: 67  GL-----MGRVADAAGIQFRVLNVKKGPA------------VRGPRTQADRELYRLAMQR 109
           GL     M  +A  +      +  + G A               PRT A        M+R
Sbjct: 92  GLAVARRMHAIAHESVDTLERMIEEHGIAEANYARIGQVKCAHTPRTLAAALAEMEWMRR 151

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSI 137
           E+  +    + + EV      ++ +  +
Sbjct: 152 EMGDRSVSPLSREEVEAETGSQDFVGGV 179


>gi|159481560|ref|XP_001698846.1| hypothetical protein CHLREDRAFT_193364 [Chlamydomonas reinhardtii]
 gi|158273338|gb|EDO99128.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 494

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 42/206 (20%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTI-GSMSCNPAIGGLGKGHLVRE 61
           YD +++G G +G   A   ++ GA  AL+   T       G   C PAI  L    +++E
Sbjct: 63  YDAVIVGAGPSGSVCAYYMSRGGAKVALLEKETFPRDKYCGDAVCTPAIRILEDMGVLQE 122

Query: 62  IDA--------LDGLM------------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRE 101
           + A          G +             ++ +AA    + +N+    A    R  AD +
Sbjct: 123 LVANNEAHFADAGGFVSPNGTSYIGVSKAKLGEAACCAVKRINLDIRVAKNAARAGADLK 182

Query: 102 LYRLAMQREILSQENL--------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL- 152
                          L         V++G V          S +  +          +  
Sbjct: 183 EKFEVTGATFDKAAGLWTVTSATGTVVRGRV--LVCADGATSRLATKLGYCTEAPKGICS 240

Query: 153 -------TTGTFLRGVIHIGKLKIPA 171
                  T  T   GV    K  +P 
Sbjct: 241 RAFIEGGTHNTNFDGVCFYPKWSLPG 266


>gi|149181841|ref|ZP_01860331.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus sp. SG-1]
 gi|148850480|gb|EDL64640.1| thioredoxin-disulfide reductase (thioredoxin reductase (NADPH))
          [Bacillus sp. SG-1]
          Length = 316

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI++G G AG  AA   ++   ST ++
Sbjct: 4  EKIYDVIIVGAGPAGMTAAVYTSRAALSTLML 35


>gi|161521597|ref|YP_001585024.1| BFD/(2Fe-2S)-binding domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352236|ref|YP_001947863.1| probable NAD(FAD)-dependent dehydrogenase [Burkholderia multivorans
           ATCC 17616]
 gi|160345647|gb|ABX18732.1| BFD domain protein (2Fe-2S)-binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336258|dbj|BAG45327.1| probable NAD(FAD)-dependent dehydrogenase [Burkholderia multivorans
           ATCC 17616]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 7/150 (4%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +++G G AG  AA      G    +I       G +   P       G  VR   AL G 
Sbjct: 8   VIVGAGPAGVRAAEALVDAGLRPVVIDENARWGGQIYRQP----PADGAFVRGKRALYGF 63

Query: 69  MGRVADAAGIQFRVLNVKKG--PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               ADA       L       P        A R       +   +   +L V  G    
Sbjct: 64  DAAKADAVHRTMAALLPHVDYRPNTLAWACGAGRVDTLQDGRETTVPYSHLIVASGATDR 123

Query: 127 FN-TEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   ++ +     + +         G
Sbjct: 124 LLPVPGWTLAGVYTLGGAQVALKAQGCAIG 153


>gi|167040239|ref|YP_001663224.1| hypothetical protein Teth514_1601 [Thermoanaerobacter sp. X514]
 gi|300914322|ref|ZP_07131638.1| HI0933 family protein [Thermoanaerobacter sp. X561]
 gi|307724442|ref|YP_003904193.1| hypothetical protein Thet_1299 [Thermoanaerobacter sp. X513]
 gi|166854479|gb|ABY92888.1| HI0933 family protein [Thermoanaerobacter sp. X514]
 gi|300889257|gb|EFK84403.1| HI0933 family protein [Thermoanaerobacter sp. X561]
 gi|307581503|gb|ADN54902.1| HI0933 family protein [Thermoanaerobacter sp. X513]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 18/90 (20%)

Query: 314 LPEEIQHQFIRTIPGLE-KVNIIRP-------GYAIEYDYINPKELFPTLETKKISGLFL 365
           + +  + + + ++  L  KV  +RP       G  +    INP     T+E+K I GLF 
Sbjct: 321 ITKNERKKLVNSLKNLTFKVKDLRPIREAIVTGGGVSIKEINP----STMESKIIKGLFF 376

Query: 366 AGQINGTTGYEE------AAAQGLVAGINS 389
           AG+I    G+        A + G VAGIN+
Sbjct: 377 AGEIIDVDGFTGGFNLQIAFSTGYVAGINA 406


>gi|78485693|ref|YP_391618.1| aminomethyltransferase [Thiomicrospira crunogena XCL-2]
 gi|78363979|gb|ABB41944.1| aminomethyltransferase [Thiomicrospira crunogena XCL-2]
          Length = 961

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 3   NRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           ++ Y   DV VIG G AG  AA  AA+ G    LI    
Sbjct: 159 HKRYHYCDVAVIGAGPAGMSAAIKAAEGGVDVCLIDENP 197


>gi|167037576|ref|YP_001665154.1| hypothetical protein Teth39_1164 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115991|ref|YP_004186150.1| hypothetical protein Thebr_1193 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856410|gb|ABY94818.1| HI0933 family protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929082|gb|ADV79767.1| HI0933 family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 18/90 (20%)

Query: 314 LPEEIQHQFIRTIPGLE-KVNIIRP-------GYAIEYDYINPKELFPTLETKKISGLFL 365
           + +  + + + ++  L  KV  +RP       G  +    INP     T+E+K I GLF 
Sbjct: 321 ITKNERKKLVNSLKNLTFKVKDLRPIREAIVTGGGVSIKEINP----STMESKIIKGLFF 376

Query: 366 AGQINGTTGYEE------AAAQGLVAGINS 389
           AG+I    G+        A + G VAGIN+
Sbjct: 377 AGEIIDVDGFTGGFNLQIAFSTGYVAGINA 406


>gi|304445730|pdb|3ADA|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
           Sp. U-96 In Complex With Sulfite
          Length = 399

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  +         ++  +D+IQ  EV GF  +   ++ +     +++   
Sbjct: 156 ATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGK 215

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
             +   G        + +L      +   P  +L +   +
Sbjct: 216 VALAGAGHSS----VLAELAGFELPIQSHPLQALVSELFE 251


>gi|302337121|ref|YP_003802327.1| dihydrolipoamide dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301634306|gb|ADK79733.1| dihydrolipoamide dehydrogenase [Spirochaeta smaragdinae DSM 11293]
          Length = 461

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 22/164 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG---SMSCNPAIGGLGKGHL 58
           ++ +YD+IVIG G AG   A  A +LG S A+I  K    G   ++ C P+   + +  +
Sbjct: 1   MSDNYDLIVIGSGPAGYVGAIRATQLGLSCAVIE-KGDVGGVCLNIGCIPSKALIRQAEI 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            R  D L+GL G   D +G  ++    K   A                  + +L +  ++
Sbjct: 60  FRNADELEGL-GVTVDKSGFDYQKAWKKSRKASTSLSKGV----------KFLLKKNKVE 108

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV 161
           +I+G              +V+ D         ++L TG+  R +
Sbjct: 109 LIEGRAT------LEGGGVVLVDGEKRYTAKNILLATGSRPREL 146


>gi|300702627|ref|YP_003744227.1| hypothetical protein RCFBP_10269 [Ralstonia solanacearum
          CFBP2957]
 gi|299070288|emb|CBJ41580.1| conserved exported protein of unknown function [Ralstonia
          solanacearum CFBP2957]
          Length = 428

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +       + S      + G+G  ++    + LD 
Sbjct: 10 VAVIGAGPAGLMAAEVLSRAGVRVEVF----DAMPSAGRKFLLAGIGGMNITHS-EPLDA 64

Query: 68 LMGRVADA 75
           +GR    
Sbjct: 65 FLGRYRAR 72


>gi|293393914|ref|ZP_06638221.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Serratia
          odorifera DSM 4582]
 gi|291423741|gb|EFE96963.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Serratia
          odorifera DSM 4582]
          Length = 423

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +DV+VIGGG AG   A   A+ G    +++
Sbjct: 2  QFDVVVIGGGLAGLSCAVGLAESGKRCVVVS 32


>gi|257460653|ref|ZP_05625754.1| fumarate reductase flavoprotein subunit [Campylobacter gracilis
           RM3268]
 gi|257441984|gb|EEV17126.1| fumarate reductase flavoprotein subunit [Campylobacter gracilis
           RM3268]
          Length = 672

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 64/226 (28%), Gaps = 26/226 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D +VIGGG AG  AA    + G ST ++      +       A GG+       ++   D
Sbjct: 7   DSLVIGGGLAGLRAAIATGEKGLSTIVL--SLIPVKRSHSAAAQGGMQASLGNSKMSEGD 64

Query: 67  GLMGRVADAA-----GIQFRVLNVKKGPAVRGPRTQADR-----ELYRLAMQREILSQEN 116
                 AD       G    V  +    A +  R  A        + R      I +Q+ 
Sbjct: 65  NEDVHFADTVKGSDWGCDQDVARMFAQTAPKAIRELAGWGVPWTRITRGERSAIINAQKT 124

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV-------IHIGKLKI 169
               + EV G     +       +  +         T    +          IH  K  I
Sbjct: 125 TITEKDEVHGLI--HSRDFGGTKKWRTCYTADATGHTMLFAVANEALKHNVDIHDRKEAI 182

Query: 170 PAGRMGDSPSNSL-----FNSFMKFDFDTGRLKTGTPARLDGKTII 210
                 +    ++         + +      + TG   R+   T  
Sbjct: 183 ALIHANNRCYGAIVRDLVTGELIAYVSKGTLIATGGYGRVYKHTTN 228


>gi|206579763|ref|YP_002240612.1| FAD-dependent oxidoreductase [Klebsiella pneumoniae 342]
 gi|206568821|gb|ACI10597.1| FAD-dependent oxidoreductase [Klebsiella pneumoniae 342]
          Length = 369

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  DVIVIG G  G   A   AK G S  LI
Sbjct: 2  KQCDVIVIGAGIIGAACAWQLAKRGQSVTLI 32


>gi|172038059|ref|YP_001804560.1| geranylgeranyl hydrogenase [Cyanothece sp. ATCC 51142]
 gi|171699513|gb|ACB52494.1| geranylgeranyl hydrogenase [Cyanothece sp. ATCC 51142]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 5   VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 54

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   + Y    +RE+L 
Sbjct: 55  LPPEIIDRRVRKMKMISPSNIEVDINLDRQ---DEYIGMCRREVLD 97


>gi|150020451|ref|YP_001305805.1| thioredoxin reductase [Thermosipho melanesiensis BI429]
 gi|149792972|gb|ABR30420.1| thioredoxin reductase [Thermosipho melanesiensis BI429]
          Length = 316

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
             YDV+++G G AG  AA  A + G S  +        G       +     G +  E 
Sbjct: 14 KEYYDVLIVGAGPAGLTAAIYAGRAGLSAVVFEKALE--GGAVTQTHVVENWPGIIKIEG 71

Query: 63 DALDGLMGRVADAAGIQFRVLNVKK 87
            L       A A G +     + K
Sbjct: 72 GELGEKFAEHAKAFGAEIVTTEIMK 96


>gi|121611603|ref|YP_999410.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
 gi|121556243|gb|ABM60392.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
          Length = 394

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          RS+D IV+G G  G   A   A+LG  T ++    + IG+ + + + G
Sbjct: 2  RSFDAIVVGAGVIGTSVAYHLARLGC-TKVLVLNRTQIGAGTTSQSSG 48


>gi|89053417|ref|YP_508868.1| FAD dependent oxidoreductase [Jannaschia sp. CCS1]
 gi|88862966|gb|ABD53843.1| FAD dependent oxidoreductase [Jannaschia sp. CCS1]
          Length = 357

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          +YD ++IGGG AG  A A  ++LG +  L         +   + A+     GH V
Sbjct: 2  TYDFLIIGGGIAGTSAGAALSRLGTTCLLEAESALAYHASGRSAALFEPNYGHPV 56


>gi|63002611|dbj|BAD97816.1| subunit beta of sarcosine oxidase [Corynebacterium sp. U-96]
          Length = 405

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  +         ++  +D+IQ  EV GF  +   ++ +     +++   
Sbjct: 162 ATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGK 221

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
             +   G        + +L      +   P  +L +   +
Sbjct: 222 VALAGAGHSS----VLAELAGFELPIQSHPLQALVSELFE 257


>gi|78185928|ref|YP_373971.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           luteolum DSM 273]
 gi|78165830|gb|ABB22928.1| iron-sulfur cluster-binding protein, GltD family [Chlorobium
           luteolum DSM 273]
          Length = 578

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V V+GGG AG  AA    ++G +  +    
Sbjct: 145 VAVVGGGPAGLSAAYQLRRMGHAVTIYDAN 174


>gi|71041784|pdb|1VRQ|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
           From Corynebacterium Sp. U-96 In Complex With Folinic
           Acid
 gi|71041934|pdb|1X31|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
           From Corynebacterium Sp. U-96
 gi|304445718|pdb|3AD7|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
           Sp. U-96 In Complex With Methylthio Acetate
 gi|304445722|pdb|3AD8|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
           Sp. U-96 In Complex With Pyrrole 2-Carboxylate
 gi|304445726|pdb|3AD9|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
           Sp. U-96 Sarcosine-Reduced Form
          Length = 404

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  +         ++  +D+IQ  EV GF  +   ++ +     +++   
Sbjct: 161 ATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGK 220

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
             +   G        + +L      +   P  +L +   +
Sbjct: 221 VALAGAGHSS----VLAELAGFELPIQSHPLQALVSELFE 256


>gi|13475848|ref|NP_107418.1| sarcosine oxidase, subunit beta [Mesorhizobium loti MAFF303099]
 gi|14026607|dbj|BAB53204.1| sarcosine oxidase, subunit beta [Mesorhizobium loti MAFF303099]
          Length = 372

 Score = 40.3 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVIV+GGG  G  +A   A+ GA   LI
Sbjct: 2  DVIVLGGGLMGTASAYFLARRGARVTLI 29


>gi|309782282|ref|ZP_07677009.1| dihydrolipoyl dehydrogenase [Ralstonia sp. 5_7_47FAA]
 gi|308918900|gb|EFP64570.1| dihydrolipoyl dehydrogenase [Ralstonia sp. 5_7_47FAA]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKEFDVLVIGAGPGGYIAAIRAGQLGLNVACCEDNP 37


>gi|308068753|ref|YP_003870358.1| hypothetical protein PPE_01984 [Paenibacillus polymyxa E681]
 gi|305858032|gb|ADM69820.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 323

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IGGG  G  AA   ++ G  T +I
Sbjct: 2  YDVIIIGGGPCGLSAAIECSRRGLQTVII 30


>gi|300691739|ref|YP_003752734.1| dihydrolipoamide dehydrogenase (component of pyruvate and
          2-oxoglutarate dehydrogenases complexes) oxidoreductase
          protein [Ralstonia solanacearum PSI07]
 gi|299078799|emb|CBJ51459.1| Dihydrolipoamide dehydrogenase (component of pyruvate and
          2-oxoglutarate dehydrogenases complexes) oxidoreductase
          protein [Ralstonia solanacearum PSI07]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKEFDVLVIGAGPGGYIAAIRAGQLGLNVACCEDNP 37


>gi|296114445|ref|ZP_06833098.1| dihydrolipoamide dehydrogenase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978801|gb|EFG85526.1| dihydrolipoamide dehydrogenase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 580

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 21/156 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
            YDVIVIG G  G   A  AA+LG   A +  K +T+G    ++ C P+   L +     
Sbjct: 121 DYDVIVIGAGPGGYVCAIRAAQLGFKVACVE-KRATLGGTCLNVGCIPSKALLQQSENFH 179

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
                   MG + D+  +    +  +K   V       +  L++      +         
Sbjct: 180 AAKDEYADMGIIIDSVKLDLNRMMARKQSVVDANVKGVE-FLFKKNKVTWLKG------- 231

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           +G V G        +  +  +   +    +++ +G+
Sbjct: 232 EGRVEG--------TGRITVNGKPVTAKHIIIASGS 259


>gi|260174354|ref|ZP_05760766.1| NAD-utilizing dehydrogenase [Bacteroides sp. D2]
 gi|315922622|ref|ZP_07918862.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696497|gb|EFS33332.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 550

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENDEVKGIETNTRKTFLGP-VILATGHSARDVY 254


>gi|256371754|ref|YP_003109578.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008338|gb|ACU53905.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
          Length = 351

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++VIGGG AG  A   AA+LGA   L+   
Sbjct: 4  IVVIGGGPAGLSAGIAAAELGAPVTLVERN 33


>gi|251791672|ref|YP_003006393.1| hypothetical protein Dd1591_4118 [Dickeya zeae Ech1591]
 gi|247540293|gb|ACT08914.1| HI0933 family protein [Dickeya zeae Ech1591]
          Length = 394

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +DVI+IG G AG   AA A + G    L+
Sbjct: 2  EQFDVIIIGAGAAGLFCAAQAGQKGLRVLLV 32


>gi|313116850|ref|YP_004037974.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
 gi|312294802|gb|ADQ68838.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
          Length = 311

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   + DV+++GGG AGC      A+ G    + 
Sbjct: 1  MTTSNRDVVIVGGGPAGCAVGVCIARYGLDVVIF 34


>gi|221210838|ref|ZP_03583818.1| BFD domain protein [Burkholderia multivorans CGD1]
 gi|221169794|gb|EEE02261.1| BFD domain protein [Burkholderia multivorans CGD1]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 7/150 (4%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +++G G AG  AA      G    +I       G +   P       G  VR   AL G 
Sbjct: 8   VIVGAGPAGVRAAEALVDAGLRPVVIDENARWGGQIYRQP----PADGAFVRGKRALYGF 63

Query: 69  MGRVADAAGIQFRVLNVKKG--PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               ADA       L       P        A R       +   +   +L V  G    
Sbjct: 64  DAAKADAVHRTMAALLPHVDYRPNTLAWACGAGRVDTLQDGRETTVPYSHLIVASGATDR 123

Query: 127 FN-TEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   ++ +     + +         G
Sbjct: 124 LLPVPGWTLAGVYTLGGAQVALKAQGCAIG 153


>gi|254451656|ref|ZP_05065093.1| protein VisC [Octadecabacter antarcticus 238]
 gi|198266062|gb|EDY90332.1| protein VisC [Octadecabacter antarcticus 238]
          Length = 405

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 25/167 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVI++GGG  G   A   + +G  T +I         +       G         +  L 
Sbjct: 10  DVIIVGGGLNGPTLALALSNIGLRTIVIDTLP---APLRGLRDFDGRSYALAHASMRLLR 66

Query: 67  --GLMGRVADAAGIQFRV----LNVKKGPAVR-----------GPRTQADRELY-RLAMQ 108
             G+ G +AD       +        +GPA             GP      + Y R A+ 
Sbjct: 67  NIGIWGDIADHTQPMLEIKVTDGRAGEGPAPWMLHFDHAEIEEGPMGFMCEDRYLRHALL 126

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             + + + +  + GE          + S+ +     ++   ++   G
Sbjct: 127 AAMDANDRITQLSGE----TVVAQDVGSVTLASGRTLKAKLIIGADG 169


>gi|297197516|ref|ZP_06914913.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
 gi|197715615|gb|EDY59649.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
          Length = 535

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +  YD +++GGGH G  AAA  A+ G S  ++    +T G+        G+
Sbjct: 20 HGRYDAVIVGGGHNGLVAAAYLARAGRSVLVLERLGNTGGAAVSTRPFAGV 70


>gi|241662796|ref|YP_002981156.1| dihydrolipoamide dehydrogenase [Ralstonia pickettii 12D]
 gi|240864823|gb|ACS62484.1| dihydrolipoamide dehydrogenase [Ralstonia pickettii 12D]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKEFDVLVIGAGPGGYIAAIRAGQLGLNVACCEDNP 37


>gi|149201967|ref|ZP_01878941.1| phytoene dehydrogenase [Roseovarius sp. TM1035]
 gi|149145015|gb|EDM33044.1| phytoene dehydrogenase [Roseovarius sp. TM1035]
          Length = 530

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          R++D IVIGGG  G  AA V A+ G S  L          +    A G  G
Sbjct: 16 RTFDSIVIGGGLNGLVAAGVLARAGQSVCL----LERAAHLGGMAAPGASG 62


>gi|146282986|ref|YP_001173139.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          stutzeri A1501]
 gi|166223484|sp|A4VMU6|STHA_PSEU5 RecName: Full=Soluble pyridine nucleotide transhydrogenase;
          Short=STH; AltName: Full=NAD(P)(+) transhydrogenase
          [B-specific]
 gi|145571191|gb|ABP80297.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          stutzeri A1501]
 gi|327481337|gb|AEA84647.1| soluble pyridine nucleotide transhydrogenase [Pseudomonas
          stutzeri DSM 4166]
          Length = 464

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   +YDV+V+G G AG  AA  A K G   A++ ++    G+ +    I      H VR
Sbjct: 1  MAVYNYDVVVLGSGPAGEGAAMNAVKAGRKVAVVDNRPLVGGNCTHLGTIPSKALRHSVR 60

Query: 61 EI 62
          +I
Sbjct: 61 QI 62


>gi|187928192|ref|YP_001898679.1| dihydrolipoamide dehydrogenase [Ralstonia pickettii 12J]
 gi|187725082|gb|ACD26247.1| dihydrolipoamide dehydrogenase [Ralstonia pickettii 12J]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +++ +DV+VIG G  G  AA  A +LG + A      
Sbjct: 1  MSKEFDVLVIGAGPGGYIAAIRAGQLGLNVACCEDNP 37


>gi|83643942|ref|YP_432377.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Hahella chejuensis KCTC
           2396]
 gi|83631985|gb|ABC27952.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Hahella chejuensis KCTC
           2396]
          Length = 410

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 18/200 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAV---AAKLGASTALI-THKTSTIGSMSCNPAI--GGLGK 55
           + R YD++++GGG  G   A     +++     AL+  H   T       P+        
Sbjct: 1   MTRHYDIVIVGGGLVGATLALALQQSSRRRFQVALVEAHSLQTSSEGPFTPSFDVRSTAL 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
            H  R +    G+              ++V +       R QA RE    A    +    
Sbjct: 61  SHGSRLLYERMGV-WSAMAPYAGGISAIHVSEQGKWGATRLQA-REQGLDAFGYVV---P 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIVM-----QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP 170
           N  + +  VA    E     +++         S      V L  G   R ++    +   
Sbjct: 116 NAAIGRSLVASL--EGWADLTVLTPAEAVSAESCPEGMRVSLREGERERDIVGRLLVLAD 173

Query: 171 AGRMGDSPSNSLFNSFMKFD 190
            GR   +    + +    + 
Sbjct: 174 GGRSSLAEGFGIASRHEDYG 193


>gi|25029443|ref|NP_739497.1| hypothetical protein CE2887 [Corynebacterium efficiens YS-314]
 gi|259508373|ref|ZP_05751273.1| Rieske family iron-sulfur cluster-binding protein [Corynebacterium
           efficiens YS-314]
 gi|23494732|dbj|BAC19697.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164043|gb|EEW48597.1| Rieske family iron-sulfur cluster-binding protein [Corynebacterium
           efficiens YS-314]
          Length = 549

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +RS+DV V+GGG  G   A + A+ G S  LI   
Sbjct: 71  DRSFDVAVVGGGITGMTTALLLAREGRSVCLIDQN 105


>gi|332665649|ref|YP_004448437.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334463|gb|AEE51564.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 594

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 32/178 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VRE 61
            +SYD++V GGG +GC AA  AA+ G   AL          +   P +GG     + V  
Sbjct: 181 TKSYDLVVTGGGLSGCAAAIAAAEKGLKVAL----------IHDRPVLGGNASSEIRVHT 230

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI- 120
           +                  R+++ +  P    P  Q D+E     +QR     +N+D+  
Sbjct: 231 LGIYG--------KFERILRMIDTEHYPNG-SPEAQKDQEKRDQNVQR----YKNIDIHY 277

Query: 121 ----QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK-IPAGR 173
                  VA     +  + +    +   IR     L       G I          GR
Sbjct: 278 NWRAYNAVADSQVIQY-VDAQHTSNGKRIRFKA-PLFVDATGDGWIGFWAGALYSYGR 333


>gi|320101601|ref|YP_004177192.1| dihydrolipoamide dehydrogenase [Isosphaera pallida ATCC 43644]
 gi|319748883|gb|ADV60643.1| dihydrolipoamide dehydrogenase [Isosphaera pallida ATCC 43644]
          Length = 487

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPA 49
          YD+IVIGGG  G  AA  AA+LG   A +  K ST+G    ++ C P+
Sbjct: 14 YDLIVIGGGPGGYVAAIRAAQLGLKVACVE-KRSTLGGTCLNIGCIPS 60


>gi|315651852|ref|ZP_07904855.1| thioredoxin-disulfide reductase [Eubacterium saburreum DSM 3986]
 gi|315485854|gb|EFU76233.1| thioredoxin-disulfide reductase [Eubacterium saburreum DSM 3986]
          Length = 536

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD +++GGG AG  AA   A+      +I
Sbjct: 1  MSKNMYDAVIVGGGPAGLTAAIYLARAYYRVLVI 34


>gi|303247741|ref|ZP_07334010.1| alanine dehydrogenase [Desulfovibrio fructosovorans JJ]
 gi|302490825|gb|EFL50724.1| alanine dehydrogenase [Desulfovibrio fructosovorans JJ]
          Length = 370

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS------CNPAIGGLGKGHLVRE 61
           V+VIGGG  G  AA +A  LGA   L+      +  +S      C P +        VRE
Sbjct: 171 VLVIGGGEVGANAAKMACGLGAKVYLLDMNLDRLRYLSDIMPKNCFPLMSSPA---TVRE 227

Query: 62  I 62
           +
Sbjct: 228 L 228


>gi|295103299|emb|CBL00843.1| thioredoxin-disulfide reductase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 309

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 29/162 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD++V+GGG  G  AA  AA+ G  T ++  K S  G M+            L  +I
Sbjct: 4   NHVYDMLVVGGGPGGYTAALYAARAGLDTIVLE-KLSAGGQMA------------LTEQI 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D   G      +     F +    +  A R       R  Y   ++ ++ +   L     
Sbjct: 51  DNYPGF-----ENGIDGFSLAENMQKQAERFGA----RSEYAEVLRMDLTAVPKL----- 96

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                +       ++V+   +  R   V   T    RGV + 
Sbjct: 97  --VETSEGIFRGKTVVLATGADPRTLGVAGETELLGRGVAYC 136


>gi|293363567|ref|ZP_06610323.1| putative thioredoxin-disulfide reductase [Mycoplasma alligatoris
          A21JP2]
 gi|292552916|gb|EFF41670.1| putative thioredoxin-disulfide reductase [Mycoplasma alligatoris
          A21JP2]
          Length = 309

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          M  + YD+++IG G AG  AA  A++   S A
Sbjct: 1  MTKQQYDLVIIGSGPAGLNAALYASRANLSVA 32


>gi|221632187|ref|YP_002521408.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1
          [Thermomicrobium roseum DSM 5159]
 gi|221155414|gb|ACM04541.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1
          [Thermomicrobium roseum DSM 5159]
          Length = 355

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK-GHLV 59
          M   +  ++VIGGG  G EAA   A LG    L+       G +   P      K  H  
Sbjct: 1  MQETTRPILVIGGGPGGLEAARTVAALGHPVLLV----ERRGRLGGTPDAERYAKLTHHF 56

Query: 60 REI-DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRT 96
          R+  +A+  L+  V D   I   VL   +  A  G   
Sbjct: 57 RDAEEAIGELVAAVTDHPLI--EVLTRSEVTACEGEAG 92


>gi|254462361|ref|ZP_05075777.1| dihydrolipoyl dehydrogenase [Rhodobacterales bacterium HTCC2083]
 gi|206678950|gb|EDZ43437.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium HTCC2083]
          Length = 462

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G  +A   A+LG  TA +  +  T+G    ++ C P+   L   H + 
Sbjct: 3  DYDVIVIGSGPGGYVSAIRCAQLGLKTACVEGR-DTLGGTCLNVGCIPSKALLHASHQLH 61

Query: 61 EID---ALDGLMGR 71
          E     A  GL G+
Sbjct: 62 EAQHNFAKMGLKGK 75


>gi|160897805|ref|YP_001563387.1| hypothetical protein Daci_2364 [Delftia acidovorans SPH-1]
 gi|160363389|gb|ABX35002.1| HI0933 family protein [Delftia acidovorans SPH-1]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          S+D IVIG G AG   AA A + G S  L+ H
Sbjct: 6  SFDAIVIGAGAAGLFCAAQAGQRGLSVLLLDH 37


>gi|218530028|ref|YP_002420844.1| glucose-methanol-choline oxidoreductase [Methylobacterium
          chloromethanicum CM4]
 gi|218522331|gb|ACK82916.1| glucose-methanol-choline oxidoreductase [Methylobacterium
          chloromethanicum CM4]
          Length = 518

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +  +YDVIV G G  GC  A   A  G S  L+             PAI   G       
Sbjct: 9  LEAAYDVIVAGAGTGGCVVAGRLAAAGFSVLLVEAGPPDSAE----PAIADAG------- 57

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            A  GL+G   D          V  G A+  PR + 
Sbjct: 58 --AWVGLLGGPCDWGYAYAPSPEVA-GRAIAIPRGRV 91


>gi|149178948|ref|ZP_01857525.1| soluble pyridine nucleotide transhydrogenase [Planctomyces maris
           DSM 8797]
 gi|148842222|gb|EDL56608.1| soluble pyridine nucleotide transhydrogenase [Planctomyces maris
           DSM 8797]
          Length = 466

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 21/141 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YDV +IG G  G  AA  A K G S             +  N    G      +R
Sbjct: 1   MPDAHYDVAIIGTGPGGEGAAMQAIKQGKSV----ISIEKFYEIGGNCTHKGTIPSKALR 56

Query: 61  -------EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
                  EI+     MGR+     ++F  L       ++           ++ M+R    
Sbjct: 57  YSILQMSEINNYMRQMGRLGMVLDLEFPDLRKTAASVIQ----------KQVGMRRTFYE 106

Query: 114 QENLDVIQGEVAGFNTEKNII 134
           +  +D+++G     +  +  I
Sbjct: 107 RNGVDLVEGHARFLDPHRIHI 127


>gi|167038818|ref|YP_001661803.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X514]
 gi|256752312|ref|ZP_05493174.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913597|ref|ZP_07130914.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X561]
 gi|307723388|ref|YP_003903139.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X513]
 gi|166853058|gb|ABY91467.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X514]
 gi|256748799|gb|EEU61841.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890282|gb|EFK85427.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X561]
 gi|307580449|gb|ADN53848.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacter sp.
           X513]
          Length = 654

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 20/136 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V +IG G AG EAA + AK      +   +T  IG    N A     K  +   ID  + 
Sbjct: 393 VAIIGAGPAGLEAARILAKRKFRPVIFE-RTDKIGG-QLNLASKPPKKEKINWLIDYFNS 450

Query: 68  LMGR-------VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            + +        A     + + LN       +G      + +  +         EN+   
Sbjct: 451 QIEKENIEVRFNAMPTIDELKALNPYAVFVTQGSEPIIPKSIPGIES-------ENVF-- 501

Query: 121 QGEVAGFNTEKNIISS 136
                    EK  IS 
Sbjct: 502 --TAEDILGEKVYISG 515


>gi|147676930|ref|YP_001211145.1| NADH:flavin oxidoreductases [Pelotomaculum thermopropionicum SI]
 gi|146273027|dbj|BAF58776.1| NADH:flavin oxidoreductases [Pelotomaculum thermopropionicum SI]
          Length = 649

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+GGG AG EAA  AA  G    L
Sbjct: 390 VLVVGGGPAGMEAARTAAIRGHRVIL 415


>gi|86359949|ref|YP_471839.1| FAD-oxidoreductase protein [Rhizobium etli CFN 42]
 gi|86284051|gb|ABC93112.1| probable FAD-oxidoreductase protein [Rhizobium etli CFN 42]
          Length = 539

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 5  SYDVIVIGGGHAGCEAAAV---AAKLGASTALI-THKTSTIGSMSCNPAIGGLGKGHLVR 60
          SYD I++G G AGC        +A  G    L+    T     +        +  G+L  
Sbjct: 12 SYDFIIVGAGSAGC--VLANRLSADPGNRVLLLEAGGTDRYHWVH-------VPIGYLYC 62

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKG 88
            +     M + A  AG+  R LN  +G
Sbjct: 63 MGNPRTDWMMKTAAEAGLNGRALNYPRG 90


>gi|72382004|ref|YP_291359.1| geranylgeranyl reductase [Prochlorococcus marinus str. NATL2A]
 gi|124025503|ref|YP_001014619.1| aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. NATL1A]
 gi|72001854|gb|AAZ57656.1| geranylgeranyl reductase:Geranylgeranyl reductase, plants and
          cyanobacteria:Geranylgeranyl reductase, plantal and
          prokaryotic [Prochlorococcus marinus str. NATL2A]
 gi|123960571|gb|ABM75354.1| Aromatic-ring hydroxylase (flavoprotein monooxygenase)
          [Prochlorococcus marinus str. NATL1A]
          Length = 443

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          V VIGGG +G  AA + AK G  T +   K   
Sbjct: 4  VAVIGGGPSGSCAAEILAKAGIKTWIFERKLDN 36


>gi|56708993|ref|YP_165038.1| oxidoreductase, FAD-binding [Ruegeria pomeroyi DSS-3]
 gi|56680678|gb|AAV97343.1| oxidoreductase, FAD-binding [Ruegeria pomeroyi DSS-3]
          Length = 433

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+GGG  G  AA   A+ G    L+  +    G+   N    G G+    +E++ + 
Sbjct: 38  DVCVVGGGFTGLSAALHLAQRGYDVVLLEAQRVGFGASGRNGGQVGQGQRLDQQELEKML 97

Query: 67  GLMGRVADAAGIQFRVLNVK 86
           G      D A   ++V    
Sbjct: 98  G-----RDHAHALWQVARQS 112


>gi|83750014|ref|ZP_00946951.1| NAD(FAD)-utilizing dehydrogenases [Ralstonia solanacearum UW551]
 gi|83723320|gb|EAP70561.1| NAD(FAD)-utilizing dehydrogenases [Ralstonia solanacearum UW551]
          Length = 155

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +       + S      + G+G  ++    +  D 
Sbjct: 10 VAVIGAGPAGLMAAEVLSRAGVRVEVF----DAMPSAGRKFLLAGIGGMNITHS-EPFDA 64

Query: 68 LMGRVADA 75
           +GR    
Sbjct: 65 FLGRYRAR 72


>gi|260062771|ref|YP_003195851.1| pyruvate/2-oxoglutarate dehydrogenase complex [Robiginitalea
          biformata HTCC2501]
 gi|88784339|gb|EAR15509.1| Pyruvate/2-oxoglutarate dehydrogenase complex [Robiginitalea
          biformata HTCC2501]
          Length = 466

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          +SYDV +IG G  G  AA   A+LG  TALI  K  T+G    ++ C P+   L   H
Sbjct: 2  KSYDVAIIGSGPGGYVAAIRCAQLGMKTALIE-KYDTLGGTCLNVGCIPSKALLDSSH 58


>gi|325510775|gb|ADZ22411.1| 2-enoate reductase (Two distinct NAD(FAD)-dependent dehydrogenase
           domains) [Clostridium acetobutylicum EA 2018]
          Length = 664

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S  V+++GGG AGCEAA V A  G    L          +  N   GG       +E
Sbjct: 400 IIKSKKVLIVGGGVAGCEAARVLALRGHEPVLY----EKSNRLGGNLIPGGA---PSFKE 452

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            D        +AD      + LNV+        + Q 
Sbjct: 453 DDIA------LADWYTNTLKELNVEVNLNSEVTKEQI 483


>gi|320592198|gb|EFX04637.1| flavin containing amine oxidoreductase [Grosmannia clavigera
           kw1407]
          Length = 589

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           VIV+G G AG  AA V  + G    ++  +   IG   C  A    GK  
Sbjct: 84  VIVVGAGIAGLRAALVLRRHGLDVVVLEAR-DRIGGRIC--ASREPGKSR 130


>gi|298241673|ref|ZP_06965480.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
 gi|297554727|gb|EFH88591.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
          Length = 374

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + +++DV+++G G  G   A   AK G S  ++   T
Sbjct: 1  MGKTFDVLIVGAGIVGTACALELAKAGCSVGILEGDT 37


>gi|297618332|ref|YP_003703491.1| dihydrolipoamide dehydrogenase [Syntrophothermus lipocalidus DSM
          12680]
 gi|297146169|gb|ADI02926.1| dihydrolipoamide dehydrogenase [Syntrophothermus lipocalidus DSM
          12680]
          Length = 469

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + +DV+ IGGG AG + A  AA+LG   A++
Sbjct: 1  MGEQVFDVVFIGGGPAGYQGAIRAAQLGMKVAVV 34


>gi|290512713|ref|ZP_06552079.1| D-amino-acid oxidase [Klebsiella sp. 1_1_55]
 gi|289775054|gb|EFD83056.1| D-amino-acid oxidase [Klebsiella sp. 1_1_55]
          Length = 369

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  DVIVIG G  G   A   AK G S  LI
Sbjct: 2  KQCDVIVIGAGIIGAACAWQLAKRGQSVTLI 32


>gi|289424028|ref|ZP_06425816.1| thioredoxin-disulfide reductase [Peptostreptococcus anaerobius
          653-L]
 gi|289155547|gb|EFD04224.1| thioredoxin-disulfide reductase [Peptostreptococcus anaerobius
          653-L]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPAI 50
          +   YD+++IGGG AG  A    A+    T ++           TH+       S   A 
Sbjct: 1  MENVYDLLIIGGGPAGLSAGLYGARGKLKTLILEKQKNGGQIVITHQVDNY-PGSVENAT 59

Query: 51 GGLGKGHLVREIDALDGLMGR 71
          G      +V +  A    + R
Sbjct: 60 GPSLTARMVEQAKAFGCEIAR 80


>gi|282890645|ref|ZP_06299168.1| hypothetical protein pah_c022o267 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499642|gb|EFB41938.1| hypothetical protein pah_c022o267 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N S+DV+VIG G  G  AA  AA+LG  TA I
Sbjct: 4  NTSFDVVVIGSGPGGYVAAIRAAQLGFKTACI 35


>gi|255079238|ref|XP_002503199.1| predicted protein [Micromonas sp. RCC299]
 gi|226518465|gb|ACO64457.1| predicted protein [Micromonas sp. RCC299]
          Length = 615

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 12/87 (13%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREIDALD 66
          VIV+GGG AG  AA    + G    L          +  N      G  G L R      
Sbjct: 5  VIVVGGGLAGLSAAHTVLEHGGRVLL----LDKCPFLGGNSTKATSGINGALTRTQAKAG 60

Query: 67 GLMGRVADAAGIQFRVLNVKKGPAVRG 93
                 D +  +F   ++ +G A  G
Sbjct: 61 ------IDDSADKFEA-DIIRGAAGVG 80


>gi|283795908|ref|ZP_06345061.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Clostridium sp. M62/1]
 gi|291076545|gb|EFE13909.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Clostridium sp. M62/1]
          Length = 440

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M +   DV VIG G AG  AA  A K GA   L+  +  +IG
Sbjct: 1  MYDIFCDVAVIGAGPAGLSAAVAAKKEGAERVLLIERDESIG 42


>gi|218883921|ref|YP_002428303.1| DNA double-strand break repair rad50 ATPase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765537|gb|ACL10936.1| DNA double-strand break repair rad50 ATPase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 818

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 432 EYRISLRPDNADNRLTPIGMKLGC-----IGERRQKRFAKYIQEYNFLRSLLKSLVLTSK 486
           +YR  L        L PI  + G      +  R ++   K  +      S  K L   +K
Sbjct: 392 KYRDLLNKGICPLCLQPIPHEHGIKLIDEVQGRLEEVGKKIRELKEEETSRYKELEDINK 451

Query: 487 NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE--RLQIESSYAA 544
            +++  +   ++       +        +Q L S+   A K +SLV E  R++ E S A 
Sbjct: 452 RINA--LEENREEVEEKLDKVRRDSTRLLQELLSLKHTAEKINSLVDEASRIEKEISEAR 509

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFD-YSSLPALSNELKEKLS 585
               ++      K     +I +  D Y        E KEKL 
Sbjct: 510 SLEEELARINSEKENTISIIHELEDKY-------REAKEKLE 544


>gi|242785273|ref|XP_002480561.1| pentachlorophenol 4-monooxygenase, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720708|gb|EED20127.1| pentachlorophenol 4-monooxygenase, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 518

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 2   INRSYDVIVIGGGHAG----CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           +N+ YDVI++G G  G    CE     A++        +K          P +G  G   
Sbjct: 1   MNKLYDVIIVGAGPVGLFLACE--LGLARISVLVLEREYKLE--SPFKDEP-LGSRGMNT 55

Query: 58  LVREIDALDGLMGRVAD----AAGIQFRVLNVKKG-PAVRGPRT---QADRELYR 104
              E     GL+G  AD    AAG+Q        G  A  G      + DR  YR
Sbjct: 56  SSVESVYRRGLLGEFADLSKRAAGLQKTAGFTYGGHFAGIGLNANKLELDRWKYR 110


>gi|198437366|ref|XP_002124441.1| PREDICTED: similar to Pipox-prov protein [Ciona intestinalis]
          Length = 393

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           S+DVIVIG G  G   A   AKL   T +I             P   G   G  
Sbjct: 2  NSFDVIVIGAGVIGSCTAYQLAKLDVKTLMIEQFP--------LPHTRGSSCGQT 48


>gi|160942844|ref|ZP_02090084.1| hypothetical protein FAEPRAM212_00321 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445896|gb|EDP22899.1| hypothetical protein FAEPRAM212_00321 [Faecalibacterium prausnitzii
           M21/2]
          Length = 309

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 29/162 (17%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           N  YD++V+GGG  G  AA  AA+ G  T ++  K S  G M+            L  +I
Sbjct: 4   NHVYDMLVVGGGPGGYTAALYAARAGLDTVVLE-KLSAGGQMA------------LTEQI 50

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           D   G      +     F +    +  A R       R  Y   ++ ++ +   L     
Sbjct: 51  DNYPGF-----ENGIDGFSLAENMQKQAERFGA----RSEYAEVLRMDLTAVPKL----- 96

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHI 164
                +       ++V+   +  R   V   T    RGV + 
Sbjct: 97  --VETSEGIFRGKTVVLATGADPRTLGVAGETELLGRGVAYC 136


>gi|109157006|pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
          Bacillus Sp. Ns-129
 gi|109157007|pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
          Bacillus Sp. Ns-129
          Length = 386

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           +DVIV+G G  G  A    AK G  T L+     +      N +  G 
Sbjct: 3  HFDVIVVGAGSMGMAAGYYLAKQGVKTLLV----DSFDPPHTNGSHHGD 47


>gi|254976684|ref|ZP_05273156.1| hypothetical protein CdifQC_15276 [Clostridium difficile QCD-66c26]
 gi|255094067|ref|ZP_05323545.1| hypothetical protein CdifC_15606 [Clostridium difficile CIP 107932]
 gi|255315818|ref|ZP_05357401.1| hypothetical protein CdifQCD-7_15739 [Clostridium difficile
           QCD-76w55]
 gi|255518479|ref|ZP_05386155.1| hypothetical protein CdifQCD-_15268 [Clostridium difficile
           QCD-97b34]
 gi|255651599|ref|ZP_05398501.1| hypothetical protein CdifQCD_15533 [Clostridium difficile
           QCD-37x79]
 gi|260684645|ref|YP_003215930.1| putative enoate reductase [Clostridium difficile CD196]
 gi|260688303|ref|YP_003219437.1| putative enoate reductase [Clostridium difficile R20291]
 gi|306521407|ref|ZP_07407754.1| predicted enoate reductase [Clostridium difficile QCD-32g58]
 gi|260210808|emb|CBA65824.1| predicted enoate reductase [Clostridium difficile CD196]
 gi|260214320|emb|CBE06668.1| predicted enoate reductase [Clostridium difficile R20291]
          Length = 649

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           +VIV+GGG AGCEAA   A+   +  L+  +  
Sbjct: 513 EVIVLGGGLAGCEAAIHLAQEEKTVHLVEMRAE 545


>gi|78044846|ref|YP_360832.1| hypothetical protein CHY_2013 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996961|gb|ABB15860.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 533

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG  AA   AK G    L+
Sbjct: 99  VVVVGAGPAGLFAALSLAKAGFPVLLL 125


>gi|15896613|ref|NP_349962.1| 2-enoate reductase [Clostridium acetobutylicum ATCC 824]
 gi|15026455|gb|AAK81302.1|AE007834_2 2-enoate reductase (Two distinct NAD(FAD)-dependent dehydrogenase
           domains) [Clostridium acetobutylicum ATCC 824]
          Length = 664

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I +S  V+++GGG AGCEAA V A  G    L          +  N   GG       +E
Sbjct: 400 IIKSKKVLIVGGGVAGCEAARVLALRGHEPVLY----EKSNRLGGNLIPGGA---PSFKE 452

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            D        +AD      + LNV+        + Q 
Sbjct: 453 DDIA------LADWYTNTLKELNVEVNLNSEVTKEQI 483


>gi|89893718|ref|YP_517205.1| putative fumarate reductase flavoprotein subunit
          [Desulfitobacterium hafniense Y51]
 gi|89333166|dbj|BAE82761.1| putative fumarate reductase flavoprotein subunit
          [Desulfitobacterium hafniense Y51]
          Length = 556

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1  MINRSY---DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  +   DV+V+GGG AG  AA  A K G   AL+
Sbjct: 1  MKNECWIKTDVLVVGGGSAGTMAALEARKTGQEVALV 37


>gi|169774299|ref|XP_001821617.1| FAD binding domain protein [Aspergillus oryzae RIB40]
 gi|83769480|dbj|BAE59615.1| unnamed protein product [Aspergillus oryzae]
          Length = 607

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 22/136 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+++IG G AG  AA  A++   +T LI  K+    +                   D ++
Sbjct: 9   DLLIIGAGPAGLMAACWASQYAITTRLIDLKSERTAAGH----------------ADGIN 52

Query: 67  GLMGRVADAAGIQFRVLNVKKG---PAVRGPR---TQADRELYRLAMQREILSQENLDVI 120
                + D+ G+   VL    G    A  GP        R  ++ +  +E+   + + + 
Sbjct: 53  SRTMEILDSFGLADTVLRQAAGNMDAAYWGPNEKTGNIRRIKHQPSQTQELSRFDQMLLN 112

Query: 121 QGEVAGFNTEKNIISS 136
           QG +     +  +   
Sbjct: 113 QGAIEQILIDYLVSKG 128


>gi|119387677|ref|YP_918711.1| FAD dependent oxidoreductase [Paracoccus denitrificans PD1222]
 gi|119378252|gb|ABL73015.1| FAD dependent oxidoreductase [Paracoccus denitrificans PD1222]
          Length = 442

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV ++GGG AG   A   A+ G   AL+
Sbjct: 19 DVAIVGGGIAGASTAWELARAGLRVALL 46


>gi|326317739|ref|YP_004235411.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323374575|gb|ADX46844.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 602

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G + A ++
Sbjct: 10 TRKFDVVIVGAGGSGMRAALELSRAGLNVASLS 42


>gi|269796437|ref|YP_003315892.1| phytoene dehydrogenase-like oxidoreductase [Sanguibacter keddieii
          DSM 10542]
 gi|269098622|gb|ACZ23058.1| phytoene dehydrogenase-like oxidoreductase [Sanguibacter keddieii
          DSM 10542]
          Length = 503

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          +DV+V+G G  G  AA   A+ G    ++  +    G     P  G  
Sbjct: 4  HDVVVVGSGPNGLAAAVTLARAGLGVLVLEAQPEAGGGARTLPLPGSE 51


>gi|237713297|ref|ZP_04543778.1| NAD-utilizing dehydrogenase [Bacteroides sp. D1]
 gi|262406673|ref|ZP_06083222.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646075|ref|ZP_06723740.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294810494|ref|ZP_06769147.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446536|gb|EEO52327.1| NAD-utilizing dehydrogenase [Bacteroides sp. D1]
 gi|262355376|gb|EEZ04467.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638646|gb|EFF56999.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294442258|gb|EFG11072.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 550

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQTRMDALIIENDEVKGIETNTRKTFLGP-VILATGHSARDVY 254


>gi|299822503|ref|ZP_07054389.1| dihydrolipoyl dehydrogenase [Listeria grayi DSM 20601]
 gi|299816032|gb|EFI83270.1| dihydrolipoyl dehydrogenase [Listeria grayi DSM 20601]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
                D IVIG G  G  AA  AA+LG    +I    +  G    ++ C P+   +  GH
Sbjct: 6   FPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIE--KANYGGVCLNVGCIPSKALITIGH 63

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
             +E +     MG  AD   + F      KG  V                 + +L +  +
Sbjct: 64  RFKEANHSAN-MGINADNVSLDFTKAQEWKGSVVNKLTGGV----------KALLKKNKV 112

Query: 118 DVIQGEVAGFNTEKNIIS 135
           ++++GE    +     + 
Sbjct: 113 EMVEGEAFFVDEHSLRVI 130


>gi|212541698|ref|XP_002151004.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210068303|gb|EEA22395.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 575

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+VIGGG AG   A+  A+ G  T L+
Sbjct: 9  VLVIGGGPAGSYCASALAREGIETVLL 35


>gi|254455153|ref|ZP_05068588.1| sarcosine oxidase, alpha subunit [Octadecabacter antarcticus 238]
 gi|198263563|gb|EDY87835.1| sarcosine oxidase, alpha subunit [Octadecabacter antarcticus 238]
          Length = 978

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           D++VIG G AG  AA  A + GA+  L
Sbjct: 170 DLLVIGAGPAGLMAALTAGRSGANVIL 196


>gi|206561993|ref|YP_002232756.1| putative amine oxidase [Burkholderia cenocepacia J2315]
 gi|198038033|emb|CAR53979.1| putative amine oxidase [Burkholderia cenocepacia J2315]
          Length = 484

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          +DV++IG G AG  AA    + G  + ++      +G  + N  +G 
Sbjct: 39 FDVVIIGAGLAGLTAARDLKRAGCESFVVVEARDRVGGRTYNHDLGN 85


>gi|120610876|ref|YP_970554.1| succinate dehydrogenase subunit A [Acidovorax citrulli AAC00-1]
 gi|120589340|gb|ABM32780.1| succinate dehydrogenase subunit A [Acidovorax citrulli AAC00-1]
          Length = 602

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G + A ++
Sbjct: 10 TRKFDVVIVGAGGSGMRAALELSRAGLNVASLS 42


>gi|56710242|dbj|BAD80965.1| putative fumarate reductase flavoprotein subunit precursor
          [uncultured bacterium]
          Length = 281

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   ++D+IV+G G AG  AA   A+ G   A++
Sbjct: 1  MAELNFDLIVLGCGVAGLSAAVAGAERGLRVAVL 34


>gi|54022934|ref|YP_117176.1| flavoprotein disulfide reductase [Nocardia farcinica IFM 10152]
 gi|54014442|dbj|BAD55812.1| putative dihydrolipoamide dehydrogenase [Nocardia farcinica IFM
          10152]
          Length = 469

 Score = 40.3 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          + +IGGG AG EAA VAA+ GA   L       IG
Sbjct: 4  IAIIGGGPAGYEAALVAAQHGAQVTL--IDRDGIG 36


>gi|332708798|ref|ZP_08428769.1| geranylgeranyl reductase [Lyngbya majuscula 3L]
 gi|332352340|gb|EGJ31909.1| geranylgeranyl reductase [Lyngbya majuscula 3L]
          Length = 411

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 10 VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 59

Query: 68 LMGRVADAAGIQFRVLNVK 86
          L   + D      ++++  
Sbjct: 60 LPPEIIDRQVRNMKMISPS 78


>gi|311693924|gb|ADP96797.1| flavoprotein, NADB Rossmann superfamily [marine bacterium HP15]
          Length = 393

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +   YDVI+IG G AG   AA A   G S  ++ H
Sbjct: 1  MPSHYDVIIIGAGAAGLMCAATAGYRGRSVLVLDH 35


>gi|307316998|ref|ZP_07596439.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|306897086|gb|EFN27831.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
          Length = 387

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          + ++  V ++G G AG  AA   A+ G  T +       +        +       L+ 
Sbjct: 1  MQKADPVAIVGAGIAGLTAALCLARQGFRTDIFEQ-ADALEEAGAGLQLSPNASRILIE 58


>gi|295090995|emb|CBK77102.1| Thioredoxin reductase [Clostridium cf. saccharolyticum K10]
          Length = 440

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M +   DV VIG G AG  AA  A K GA   L+  +  +IG
Sbjct: 1  MYDIFCDVAVIGAGPAGLSAAVAAKKEGAERVLLIERDESIG 42


>gi|257440181|ref|ZP_05615936.1| thioredoxin-disulfide reductase [Faecalibacterium prausnitzii
          A2-165]
 gi|257197533|gb|EEU95817.1| thioredoxin-disulfide reductase [Faecalibacterium prausnitzii
          A2-165]
          Length = 284

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++++IG G AG  AA  AA+ G  T ++T
Sbjct: 3  NIVIIGSGPAGVSAALYAARAGVQTTVLT 31


>gi|242373380|ref|ZP_04818954.1| succinate dehydrogenase flavoprotein subunit [Staphylococcus
          epidermidis M23864:W1]
 gi|242348743|gb|EES40345.1| succinate dehydrogenase flavoprotein subunit [Staphylococcus
          epidermidis M23864:W1]
          Length = 588

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  +   VIV+GGG AG  +   AA+ GA   L +          C    G  G  +   
Sbjct: 1  MAEKK--VIVVGGGLAGLMSTIKAAEQGAHVDLFSLVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61 EID 63
          E D
Sbjct: 58 EGD 60


>gi|223043717|ref|ZP_03613760.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Staphylococcus capitis SK14]
 gi|222442814|gb|EEE48916.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Staphylococcus capitis SK14]
          Length = 588

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  +   VIV+GGG AG  +   AA+ GA   L +          C    G  G  +   
Sbjct: 1  MAEKK--VIVVGGGLAGLMSTIKAAEQGAHVDLFSLVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61 EID 63
          E D
Sbjct: 58 EGD 60


>gi|187779185|ref|ZP_02995658.1| hypothetical protein CLOSPO_02780 [Clostridium sporogenes ATCC
           15579]
 gi|187772810|gb|EDU36612.1| hypothetical protein CLOSPO_02780 [Clostridium sporogenes ATCC
           15579]
          Length = 665

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+++GGG AG EAA VAA  G    L        G +  N   GG+
Sbjct: 407 VLIVGGGVAGMEAARVAAIRGHKVTL----IEKNGYLGGNIVPGGV 448


>gi|182440587|ref|YP_001828306.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|178469103|dbj|BAG23623.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 514

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 7  YDAVIVGGGHNGLVAAAYLARAGQSVLVL 35


>gi|168179860|ref|ZP_02614524.1| 2-enoate reductase [Clostridium botulinum NCTC 2916]
 gi|182669485|gb|EDT81461.1| 2-enoate reductase [Clostridium botulinum NCTC 2916]
          Length = 665

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+++GGG AG EAA VAA  G    L        G +  N   GG+
Sbjct: 407 VLIVGGGVAGMEAARVAAIRGHKVTL----IEKNGYLGGNIVPGGV 448


>gi|148380120|ref|YP_001254661.1| 2-enoate reductase [Clostridium botulinum A str. ATCC 3502]
 gi|153934163|ref|YP_001384419.1| 2-enoate reductase [Clostridium botulinum A str. ATCC 19397]
 gi|153937190|ref|YP_001387955.1| 2-enoate reductase [Clostridium botulinum A str. Hall]
 gi|148289604|emb|CAL83707.1| cinnamate reductase [Clostridium botulinum A str. ATCC 3502]
 gi|152930207|gb|ABS35707.1| 2-enoate reductase [Clostridium botulinum A str. ATCC 19397]
 gi|152933104|gb|ABS38603.1| 2-enoate reductase [Clostridium botulinum A str. Hall]
          Length = 665

 Score = 40.3 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+++GGG AG EAA VAA  G    L        G +  N   GG+
Sbjct: 407 VLIVGGGVAGMEAARVAAIRGHKVTL----IEKNGYLGGNIVPGGV 448


>gi|330962707|gb|EGH62967.1| FAD dependent oxidoreductase [Pseudomonas syringae pv. maculicola
          str. ES4326]
          Length = 391

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALI 34
          IVIGGG  G  AA   A+ G   AL+
Sbjct: 10 IVIGGGIVGASAALALARKGTRVALL 35


>gi|323127044|gb|ADX24341.1| glutathione reductase [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 450

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD IVIGGG AG  +A  AA  GA   L   K
Sbjct: 1  MVNHYDYIVIGGGSAGIASANRAAMHGAKVLLAEGK 36


>gi|322705325|gb|EFY96912.1| cellobiose dehydrogenase [Metarhizium anisopliae ARSEF 23]
          Length = 577

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +S+DVIV+G G AG   A   ++ G  T L+  
Sbjct: 29 QSWDVIVVGAGTAGIIVADRLSEAGYKTLLLQQ 61


>gi|322411527|gb|EFY02435.1| glutathione reductase [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
          Length = 450

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD IVIGGG AG  +A  AA  GA   L   K
Sbjct: 1  MVNHYDYIVIGGGSAGIASANRAAMHGAKVLLAEGK 36


>gi|314933345|ref|ZP_07840710.1| succinate dehydrogenase, flavoprotein subunit [Staphylococcus
          caprae C87]
 gi|313653495|gb|EFS17252.1| succinate dehydrogenase, flavoprotein subunit [Staphylococcus
          caprae C87]
          Length = 588

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M  +   VIV+GGG AG  +   AA+ GA   L +          C    G  G  +   
Sbjct: 1  MAEKK--VIVVGGGLAGLMSTIKAAEQGAHVDLFSLVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61 EID 63
          E D
Sbjct: 58 EGD 60


>gi|304386348|ref|ZP_07368681.1| fumarate reductase subunit A [Pediococcus acidilactici DSM 20284]
 gi|304327705|gb|EFL94932.1| fumarate reductase subunit A [Pediococcus acidilactici DSM 20284]
          Length = 460

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           + +D +++G G AG  +A   A+ G    ++  K +  G  S   + G      +V+E
Sbjct: 13 EKQFDTVIVGAGSAGLVSALALAEAGKRVIVLE-KMAKPGGNSIRASSGMNAAKTVVQE 70


>gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1011

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--IGGLGKGHLVREIDAL 65
           +V+GGG AG  AA   AK G S  L+      +G M+ N A  +GG     +V E+ A 
Sbjct: 598 LVVGGGVAGLTAALQLAKQGISVKLVERDK-QLGGMALNLAHTLGGEPVRPIVEELVAQ 655


>gi|288802506|ref|ZP_06407945.1| CBS domain protein [Prevotella melaninogenica D18]
 gi|288335034|gb|EFC73470.1| CBS domain protein [Prevotella melaninogenica D18]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 15/83 (18%)

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQ----------MIEAKEIKFEEKRLIPKDFDYSSLP 574
                  +   ++ E     Y  +Q           +E  ++       +P++ DY ++ 
Sbjct: 317 LEDIVEEIFGDIEDEHDNTKYIAKQINANEYVLSARLEIDKVNEMFNLDLPENDDYMTVG 376

Query: 575 ALSNELKE---KLSILKPFNLLQ 594
            L   + +   KL+ +    + Q
Sbjct: 377 GLLLHVYQSFPKLNEI--VTVGQ 397


>gi|282897405|ref|ZP_06305407.1| Geranylgeranyl reductase [Raphidiopsis brookii D9]
 gi|281198057|gb|EFA72951.1| Geranylgeranyl reductase [Raphidiopsis brookii D9]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 5  VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 54

Query: 68 LMGRVADAAGIQFRVLNVK 86
          L   + D      ++++  
Sbjct: 55 LPADIIDRRVRNMKMISPS 73


>gi|288937308|ref|YP_003441367.1| FAD dependent oxidoreductase [Klebsiella variicola At-22]
 gi|288892017|gb|ADC60335.1| FAD dependent oxidoreductase [Klebsiella variicola At-22]
          Length = 369

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  DVIVIG G  G   A   AK G S  LI
Sbjct: 2  KQCDVIVIGAGIIGAACAWQLAKRGQSVTLI 32


>gi|254519498|ref|ZP_05131554.1| FAD flavoprotein oxidase [Clostridium sp. 7_2_43FAA]
 gi|226913247|gb|EEH98448.1| FAD flavoprotein oxidase [Clostridium sp. 7_2_43FAA]
          Length = 541

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTAL 33
          DV VIG G AG  +A  A+  G    L
Sbjct: 14 DVFVIGAGIAGVMSAIQASNKGCKVIL 40


>gi|225352223|ref|ZP_03743246.1| hypothetical protein BIFPSEUDO_03839 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157470|gb|EEG70809.1| hypothetical protein BIFPSEUDO_03839 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 493

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 29/188 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
           M  + +D+++IG G  G   A  AA+LG + AL+     T+G       C P+   L   
Sbjct: 1   MTEQHFDIVIIGAGPGGYSTALRAAQLGKTVALVERD-DTLGGTCLNRGCIPSKALLTAA 59

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLN---------VKKGPA-------VRGPRTQAD- 99
           H V  +   +  MG       I F  L          + KG A       V   R +A  
Sbjct: 60  HSVENVRQAE-RMGVNVALQSIDFGRLRDFRMSTVETMTKGLAGLLSHRGVTVFRGEAQL 118

Query: 100 RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGTF 157
           +  + + +   +   + L  I+  V      +  IS   IV+          + L    F
Sbjct: 119 KNGHEVHVAPALGETQVLRSIKAGVGELVGSELTISGGDIVLATG----SRPLPLPDDPF 174

Query: 158 LRGVIHIG 165
              +I   
Sbjct: 175 SGALIDST 182


>gi|190573571|ref|YP_001971416.1| putative oxidoreductase [Stenotrophomonas maltophilia K279a]
 gi|190011493|emb|CAQ45111.1| putative oxidoreductase [Stenotrophomonas maltophilia K279a]
          Length = 425

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV V+G G+ G  AA   A  G    ++  +    G+   N     +G G  V E++   
Sbjct: 30  DVAVLGAGYTGLTAALELASRGQRVVVLEAQRIGWGASGRNGGQALVGYGCEVDELERQL 89

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
           G      D A   F         AV+  RT+ DR  
Sbjct: 90  G-----RDDARHLFDWSRD----AVQAMRTRIDRHR 116


>gi|160940409|ref|ZP_02087754.1| hypothetical protein CLOBOL_05299 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436989|gb|EDP14756.1| hypothetical protein CLOBOL_05299 [Clostridium bolteae ATCC
           BAA-613]
          Length = 478

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 30/169 (17%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHL 58
           +   +D+++IG G  G  AA   AKLG S A++       G+     C PA   +    L
Sbjct: 1   MADIFDLVIIGAGPGGYVAAIKGAKLGLSVAVVE-NREVGGTCLNRGCIPAKAMIHASRL 59

Query: 59  VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPR--------------------TQA 98
            RE+    G  G  A+    ++  +   K       R                     QA
Sbjct: 60  YREMK-EGGQFGIFAENVRYEYDKILEYKEGTSGSLRQGVEQLFKANNVTLVKGTGTLQA 118

Query: 99  DRELYR-----LAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN 142
           D+ +           R +     L     +      E   +  ++  D 
Sbjct: 119 DKTVLVTGCEGEEESRVLKGTHVLLASGSKPMNLPIEGLELPGVLTSDG 167


>gi|116668818|ref|YP_829751.1| FAD dependent oxidoreductase [Arthrobacter sp. FB24]
 gi|116608927|gb|ABK01651.1| FAD dependent oxidoreductase [Arthrobacter sp. FB24]
          Length = 516

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV VIGGG AG  AA    + G + A++
Sbjct: 36 DVAVIGGGIAGLTAALALKRAGQTVAVL 63


>gi|328886496|emb|CCA59735.1| Phytoene desaturase, pro-zeta-carotene producing [Streptomyces
          venezuelae ATCC 10712]
          Length = 466

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALI 34
          +V+GGG AG  AA   A+ G    L+
Sbjct: 16 VVVGGGLAGITAALQLAEAGVGVTLL 41


>gi|312141602|ref|YP_004008938.1| oxidoreductase [Rhodococcus equi 103S]
 gi|311890941|emb|CBH50260.1| putative oxidoreductase [Rhodococcus equi 103S]
          Length = 535

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV+V+G G AG  A     + G S  L 
Sbjct: 10 TYDVVVVGAGFAGLYALHSLRRRGMSVRLF 39


>gi|304313268|ref|YP_003812866.1| Predicted flavoprotein [gamma proteobacterium HdN1]
 gi|301799001|emb|CBL47240.1| Predicted flavoprotein [gamma proteobacterium HdN1]
          Length = 415

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 10 VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          VIGGG AG  AA++ +K G S  L       + S+     + G+G  +L   
Sbjct: 12 VIGGGPAGLMAASILSKQGFSVDLF----DGMASLGRKFLLAGIGGMNLTHS 59


>gi|325677178|ref|ZP_08156844.1| phenylacetone monooxygenase [Rhodococcus equi ATCC 33707]
 gi|325551875|gb|EGD21571.1| phenylacetone monooxygenase [Rhodococcus equi ATCC 33707]
          Length = 536

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDV+V+G G AG  A     + G S  L 
Sbjct: 10 TYDVVVVGAGFAGLYALHSLRRRGMSVRLF 39


>gi|302346445|ref|YP_003814743.1| hypothetical protein HMPREF0659_A6699 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150846|gb|ADK97107.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 15/83 (18%)

Query: 525 ARKFSSLVIERLQIESSYAAYTGRQ----------MIEAKEIKFEEKRLIPKDFDYSSLP 574
                  +   ++ E     Y  +Q           +E  ++       +P++ DY ++ 
Sbjct: 317 LEDIVEEIFGDIEDEHDNTKYIAKQINDNEYVLSARLEIDKVNEMFNLDLPENDDYMTVG 376

Query: 575 ALSNELKE---KLSILKPFNLLQ 594
            L   + +   KL+ +    + Q
Sbjct: 377 GLLLHVYQSFPKLNEI--ITVGQ 397


>gi|256378252|ref|YP_003101912.1| monooxygenase FAD-binding [Actinosynnema mirum DSM 43827]
 gi|255922555|gb|ACU38066.1| monooxygenase FAD-binding [Actinosynnema mirum DSM 43827]
          Length = 429

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT----------STIGSMSCNPAIGGLG 54
          S+DV+V+GG  AGC  A   +++G   AL+  KT          +        P + GLG
Sbjct: 21 SWDVVVVGGSIAGCATAIRFSRMGHRVALLDRKTMDDGHHKRLCTHFIQPHAVPLLAGLG 80

Query: 55 KGHL 58
            HL
Sbjct: 81 LDHL 84


>gi|226349548|ref|YP_002776662.1| putative oxidoreductase [Rhodococcus opacus B4]
 gi|226245463|dbj|BAH55810.1| putative oxidoreductase [Rhodococcus opacus B4]
          Length = 425

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV VIG G  G   A   A+ GAS  L+   T   G+   N  +   G
Sbjct: 27 DVAVIGAGLTGLSTALHVARAGASVVLLEEHTIGWGASGRNGGMATTG 74


>gi|226305290|ref|YP_002765248.1| oxidoreductase [Rhodococcus erythropolis PR4]
 gi|226184405|dbj|BAH32509.1| putative oxidoreductase [Rhodococcus erythropolis PR4]
          Length = 643

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
           V+V+GGG AG EAA ++A  G S  L+   +S  G M    A G
Sbjct: 372 VLVVGGGPAGMEAARISAVAGHSVTLVE-SSSKFGGMIRTFARG 414


>gi|255553484|ref|XP_002517783.1| polyamine oxidase, putative [Ricinus communis]
 gi|223543055|gb|EEF44590.1| polyamine oxidase, putative [Ricinus communis]
          Length = 493

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------------- 54
           VIVIG G +G  AA V A+ G    +I   +  IG      + GG+              
Sbjct: 9   VIVIGAGISGLSAAKVLAENGIEDVVILEASDRIGGRIKKESFGGVSVELGAGWIAGVGG 68

Query: 55  -KGHLVREIDALDGLMGRVADAAGIQFRVLNVK-----KGPAVRGPRTQAD 99
            + + V E+    GL    +D +  ++ + +        G A    +   D
Sbjct: 69  KESNPVWELANQSGLRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVD 119


>gi|254302992|ref|ZP_04970350.1| thioredoxin-disulfide reductase [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|148323184|gb|EDK88434.1| thioredoxin-disulfide reductase [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
          Length = 310

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          + + YDV+++G G AG  A   A +   ST ++      IGSM     I      H+   
Sbjct: 4  MEKIYDVVIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSMVMTHQIDNYPGSHIGAS 61

Query: 62 IDALDGLMGRVADAAGIQFR 81
             +   M + A   G + +
Sbjct: 62 GKEIYDTMKKQALDFGCEIK 81


>gi|15899491|ref|NP_344096.1| electron transfert oxidoreductase [Sulfolobus solfataricus P2]
 gi|284174260|ref|ZP_06388229.1| electron transfert oxidoreductase [Sulfolobus solfataricus 98/2]
 gi|13816113|gb|AAK42886.1| Electron transfert oxidoreductase [Sulfolobus solfataricus P2]
 gi|261601263|gb|ACX90866.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Sulfolobus solfataricus 98/2]
          Length = 407

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++GGG AG  AA  A + G ST ++
Sbjct: 6  DVIIVGGGLAGLSAAITANREGLSTIVL 33


>gi|56963069|ref|YP_174796.1| thioredoxin reductase [Bacillus clausii KSM-K16]
 gi|56909308|dbj|BAD63835.1| thioredoxin reductase [Bacillus clausii KSM-K16]
          Length = 298

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 43/150 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +D I+IGGG AG  AA V  +      L+                               
Sbjct: 2   FDCIIIGGGPAGLNAALVLGRAKRKVLLL------------------------------- 30

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                   D    +  V +   G      R   +   ++ A   ++    N++  Q  V 
Sbjct: 31  --------DENKPRNAVTHASHGF---LTRDGIEPSAFKEAAYADLRKYPNIEWTQVRVG 79

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
               E++  S +  +         ++L TG
Sbjct: 80  AMTKEQSGFS-VQTEKKETYHARKILLATG 108


>gi|640319|pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In The Oxidized And Nadph Reduced State
 gi|640320|pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In The Oxidized And Nadph Reduced State
 gi|157879376|pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In The Oxidized And Nadph Reduced State
 gi|157879377|pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In The Oxidized And Nadph Reduced State
          Length = 491

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          +++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MSKIFDLVVIGAGSGGLEAAWNAATLYKK 29


>gi|6573510|pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In Complex With Trypanothione, And The
          Structure- Based Discovery Of New Natural Product
          Inhibitors
 gi|6573511|pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
          Reductase In Complex With Trypanothione, And The
          Structure- Based Discovery Of New Natural Product
          Inhibitors
          Length = 486

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          +++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MSKIFDLVVIGAGSGGLEAAWNAATLYKK 29


>gi|86140141|ref|ZP_01058703.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseobacter sp.
           MED193]
 gi|85823078|gb|EAQ43291.1| oxidoreductase, FMN-binding/pyridine
           nucleotide-disulfideoxidoreductase [Roseobacter sp.
           MED193]
          Length = 660

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           ++V+GGG AG EAA VAA+ G    L
Sbjct: 388 ILVVGGGPAGLEAARVAAERGHQVTL 413


>gi|71400296|ref|XP_803005.1| trypanothione reductase [Trypanosoma cruzi strain CL Brener]
 gi|70865530|gb|EAN81559.1| trypanothione reductase, putative [Trypanosoma cruzi]
          Length = 388

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          +++ +D++VIG G  G EAA  AA L   
Sbjct: 1  MSKIFDLVVIGAGSGGLEAAWNAATLYKK 29


>gi|326781260|ref|ZP_08240525.1| FAD dependent oxidoreductase [Streptomyces cf. griseus XylebKG-1]
 gi|326661593|gb|EGE46439.1| FAD dependent oxidoreductase [Streptomyces cf. griseus XylebKG-1]
          Length = 514

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +++GGGH G  AAA  A+ G S  ++
Sbjct: 7  YDAVIVGGGHNGLVAAAYLARAGQSVLVL 35


>gi|323474440|gb|ADX85046.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sulfolobus islandicus REY15A]
 gi|323477177|gb|ADX82415.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Sulfolobus islandicus HVE10/4]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|284997496|ref|YP_003419263.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.D.8.5]
 gi|284445391|gb|ADB86893.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.D.8.5]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|260173260|ref|ZP_05759672.1| hypothetical protein BacD2_15420 [Bacteroides sp. D2]
 gi|315921533|ref|ZP_07917773.1| hypothetical protein BSGG_2943 [Bacteroides sp. D2]
 gi|313695408|gb|EFS32243.1| hypothetical protein BSGG_2943 [Bacteroides sp. D2]
          Length = 760

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 31/191 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D +++GGG +G  AA  AA+ G    L          +   P +GG G   +   +    
Sbjct: 20  DFVIVGGGISGVCAAITAARQGLKVVL----------IQDRPVLGGNGSSEIRLWMLGAT 69

Query: 67  GLMG---RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
             MG   R A   G+   ++         G     D       M  +++S+ N+ ++   
Sbjct: 70  SHMGNNNRWAREGGVIDEIMVENTFRNSEGNPIIFDSV-----MLDKVVSEPNITLLLNT 124

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA----GRMGDSPS 179
                     +  +       I       +  + +  +              G +  +P 
Sbjct: 125 C---------VYEVKKSAGHKIESVRGFCSQNSTMYEITAPLFCDASGDGVVGFLSGAPY 175

Query: 180 NSLFNSFMKFD 190
                S  +F 
Sbjct: 176 RMGAESREEFG 186


>gi|253689106|ref|YP_003018296.1| nitrite reductase (NAD(P)H), large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755684|gb|ACT13760.1| nitrite reductase (NAD(P)H), large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 1396

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 54/155 (34%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MI RS   +VIGGG  G EAAA     GA   L          +   P +       + R
Sbjct: 142 MIRRSVPAVVIGGGLLGIEAAAALKLRGADVTL----------LHRVPVL-------MER 184

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           ++DA+       +D      R          RG   + D                    +
Sbjct: 185 QLDAM------ASDLLCDSLR---------ARGIACETD--------------------V 209

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           Q  V   + +++ ++++ + D   I    VV+T G
Sbjct: 210 Q--VVALHGDEHGVTAVALADGRTIPAGLVVVTAG 242


>gi|229584601|ref|YP_002843102.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.16.27]
 gi|228019650|gb|ACP55057.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.16.27]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|227827386|ref|YP_002829165.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.14.25]
 gi|238619542|ref|YP_002914367.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus M.16.4]
 gi|227459181|gb|ACP37867.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus M.14.25]
 gi|238380611|gb|ACR41699.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus M.16.4]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|227830079|ref|YP_002831858.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.S.2.15]
 gi|227456526|gb|ACP35213.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus L.S.2.15]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|255589834|ref|XP_002535101.1| sarcosine oxidase, putative [Ricinus communis]
 gi|223524032|gb|EEF27281.1| sarcosine oxidase, putative [Ricinus communis]
          Length = 411

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
            +D IVIG G  G   A   AK G  T L+  
Sbjct: 6  NEFDAIVIGAGIMGSTTAYELAKRGKKTLLLEQ 38


>gi|254480821|ref|ZP_05094067.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
 gi|214038616|gb|EEB79277.1| FAD dependent oxidoreductase, putative [marine gamma
          proteobacterium HTCC2148]
          Length = 466

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+V+G G AG   A   A+ G   A++
Sbjct: 67 DVVVVGAGLAGSSLALHLAEAGVKVAVL 94


>gi|159124822|gb|EDP49940.1| monooxygenase, putative [Aspergillus fumigatus A1163]
          Length = 468

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 30/235 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           +IV+G G AG  AA   A  G S  ++      +  +     +   G     R +   D 
Sbjct: 28  IIVVGAGLAGISAAISCALAGHSVTVLEAAKE-LAEVGAGLQVTPNGS----RLLRIWD- 81

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
           L   + D A    ++   +   AV       D+ + R            +D+ +G++   
Sbjct: 82  LPQTLWDQAAEPTQLTVHRYSGAVLAREVDFDKNIRRKY------GVPFVDLHRGDLQQG 135

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             ++     +    N+ ++     + + T L G  +   L + A        + L++   
Sbjct: 136 LYQRAQQLGVKFHLNARVQSVDPAVPSLTTLSGHQYHADLIVGA--------DGLWSRTR 187

Query: 188 KFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGI 242
           +    T      T        +  D+          I  S + D +++ ++   I
Sbjct: 188 ECFLGTADPPKPTGDLAYRIVLSLDQ----------IKQSPLRDWVSHPEVHFWI 232


>gi|229578892|ref|YP_002837290.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus Y.G.57.14]
 gi|229582354|ref|YP_002840753.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus Y.N.15.51]
 gi|228009606|gb|ACP45368.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Sulfolobus islandicus Y.G.57.14]
 gi|228013070|gb|ACP48831.1| FAD-dependent pyridine nucleotide-disulphideoxido reductase
          [Sulfolobus islandicus Y.N.15.51]
          Length = 445

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAI 50
           YD++VIGGG AG  A ++ A+ G    +I       G +     C P+I
Sbjct: 2  KYDIVVIGGGTAGYVAGSILARKGKKVIVIE--KEKFGGVCVNFGCVPSI 49


>gi|121608645|ref|YP_996452.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Verminephrobacter eiseniae EF01-2]
 gi|121553285|gb|ABM57434.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Verminephrobacter eiseniae EF01-2]
          Length = 412

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 32/171 (18%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +    D +V+G G AG  AA    + G    L+  +  + G +  +        GH    
Sbjct: 1   MAEPIDAVVVGSGPAGIAAAVALRRQGLRRVLLLEREDSAGGVPRH-------CGHPPFG 53

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
           +     +                   GPA    R   D    + A     L    L ++ 
Sbjct: 54  MREFGRVC-----------------TGPAYA--RRLLDLA--QQAGVELHLRTTVLALLP 92

Query: 122 GEVAGFN----TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLK 168
             V         ++     +++         +  L +G    GVI+ G L+
Sbjct: 93  DAVLDIVSPAGRDRLQARRVILATGVRETPRSARLVSGDRPLGVINTGALQ 143


>gi|312889781|ref|ZP_07749327.1| dihydrolipoamide dehydrogenase [Mucilaginibacter paludis DSM
          18603]
 gi|311297707|gb|EFQ74830.1| dihydrolipoamide dehydrogenase [Mucilaginibacter paludis DSM
          18603]
          Length = 467

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA   A+LG  TA I
Sbjct: 2  QYDVIVIGSGPGGYVAAIRCAQLGLKTACI 31


>gi|300689994|ref|YP_003750989.1| hypothetical protein RPSI07_0296 [Ralstonia solanacearum PSI07]
 gi|299077054|emb|CBJ49670.1| conserved exported protein of unknown function [Ralstonia
          solanacearum PSI07]
          Length = 426

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +      ++ S      + G+G  ++    +A D 
Sbjct: 10 VAVIGAGPAGLIAAEVLSRAGVRVEVF----DSMPSAGRKFLLAGIGGMNITHS-EAFDA 64

Query: 68 LMGRVADA 75
           +GR    
Sbjct: 65 FLGRYRAR 72


>gi|261879399|ref|ZP_06005826.1| TPP-dependent acetoin dehydrogenase complex [Prevotella bergensis
           DSM 17361]
 gi|270333967|gb|EFA44753.1| TPP-dependent acetoin dehydrogenase complex [Prevotella bergensis
           DSM 17361]
          Length = 441

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 31/156 (19%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+I+IG G  G E A  AA+ G    +I       G+  C  +     K  +    +AL 
Sbjct: 4   DLIIIGSGPGGYETAVYAARQGLQVVVIEKN-DVGGT--CLNSGCIPTKALVHDAENALG 60

Query: 67  GLMGRVADAAGIQFR---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
              G+    A +Q +   V N+++G                      ++ Q  + +IQG+
Sbjct: 61  KDNGQALFQAAVQRKDGIVSNLRQG-------------------VEALMHQPGITLIQGK 101

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            A F ++ +++       +  I    +++ TG+  +
Sbjct: 102 AA-FRSKHSVVVG-----DEEIEADHIIIATGSTAK 131


>gi|220907015|ref|YP_002482326.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Cyanothece sp. PCC 7425]
 gi|219863626|gb|ACL43965.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Cyanothece sp. PCC 7425]
          Length = 345

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD IV+GGG  G  AA   A+ G    +I
Sbjct: 16 YDAIVVGGGMGGLSAAIYLARYGLKCLVI 44


>gi|118592194|ref|ZP_01549587.1| probable oxidoreductase [Stappia aggregata IAM 12614]
 gi|118435166|gb|EAV41814.1| probable oxidoreductase [Stappia aggregata IAM 12614]
          Length = 432

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL-VREIDA 64
           YDV VIG G  G  AA   AK G    ++  ++   G+   N      G  H     +  
Sbjct: 33  YDVAVIGAGFTGLGAARRLAKEGRRVIVLEAQSVGFGASGRNGGHLNNGIAHSFTHAVST 92

Query: 65  LDGLMGRVADAAGI 78
                 R    A  
Sbjct: 93  YGLETARAMYRAFD 106


>gi|328675827|gb|AEB28502.1| L-aspartate oxidase [Francisella cf. novicida 3523]
          Length = 495

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGSMSCNPAIGGLGKG 56
          MI + +DV ++GGG AG  AA   A+     A +   K +   S      I  +   
Sbjct: 1  MIIKKHDVAIVGGGLAGIVAAIELAEHDLDVAIIYDQKINHCASAYAQGGIAAIVSS 57


>gi|306845905|ref|ZP_07478473.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Brucella sp. BO1]
 gi|306273797|gb|EFM55635.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Brucella sp. BO1]
          Length = 414

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          D+I+ GGG AG  AA      G  T L+  +T  
Sbjct: 12 DIIISGGGPAGMMAALALGVRGYHTVLLGPETDK 45


>gi|294055763|ref|YP_003549421.1| L-aspartate oxidase [Coraliomargarita akajimensis DSM 45221]
 gi|293615096|gb|ADE55251.1| L-aspartate oxidase [Coraliomargarita akajimensis DSM 45221]
          Length = 538

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG------- 54
          +  +YDVIV+G G AG   A   A+ G   A+IT K S     + N A GG+        
Sbjct: 1  MLHNYDVIVVGSGIAGLSFAIKVAEAGQRVAIITKKDS--AESNTNYAQGGIAAVTSQTD 58

Query: 55 --KGHLVREIDALDGLMGRVA 73
            + H+   + A DGL    A
Sbjct: 59 DVEMHVADTLGAGDGLCDESA 79


>gi|293603064|ref|ZP_06685498.1| oxidoreductase [Achromobacter piechaudii ATCC 43553]
 gi|292818458|gb|EFF77505.1| oxidoreductase [Achromobacter piechaudii ATCC 43553]
          Length = 300

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          +   +D +++GGG AG   A   A+LG S  LI       G    NP
Sbjct: 1  MQHMHDAVIVGGGPAGASCALWLARLGLSPILIEASAQLGGLAQDNP 47


>gi|266625296|ref|ZP_06118231.1| TPP-dependent acetoin dehydrogenase complex, E3 component,
          dihydrolipoyl dehydrogenase [Clostridium hathewayi DSM
          13479]
 gi|288862809|gb|EFC95107.1| TPP-dependent acetoin dehydrogenase complex, E3 component,
          dihydrolipoyl dehydrogenase [Clostridium hathewayi DSM
          13479]
          Length = 240

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          + + YD+ +IGGG  G  AA  AA LG  TA+
Sbjct: 1  MAKHYDLFIIGGGPGGYTAALKAAGLGLKTAI 32


>gi|262279754|ref|ZP_06057539.1| gamma-glutamylputrescine oxidoreductase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262260105|gb|EEY78838.1| gamma-glutamylputrescine oxidoreductase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 481

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG  G  +A   A+ G  T L+      IGS +     G L  G    E   + 
Sbjct: 74  DVVVIGGGLLGSSSALHLAEQGVDTVLLEKN--RIGSAASGRNGGQLTPGLARWEAQEMA 131

Query: 67  GLMGRVADAAGIQFRVLNVKK 87
             +G         F      K
Sbjct: 132 DRLGYEDAKKLWHFTSTEAMK 152


>gi|260462912|ref|ZP_05811116.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum WSM2075]
 gi|259031306|gb|EEW32578.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum WSM2075]
          Length = 424

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD +++GGG  G  AA   AK GA  A++  +    G+   N      G  H      A
Sbjct: 25  HYDAVIVGGGFTGLAAARQLAKAGAKVAVLEAQRVGWGASGRNGGHLNNGLAHSYLSAKA 84

Query: 65  LDG-----LMGRVADAAGIQFRVLNVKKG 88
             G      + R  D +      L  ++G
Sbjct: 85  ELGKERAIALYRTLDDSVDTIEALVAEEG 113


>gi|225870727|ref|YP_002746674.1| dihydrolipoamide dehydrogenase [Streptococcus equi subsp. equi
           4047]
 gi|225700131|emb|CAW94253.1| dihydrolipoamide dehydrogenase [Streptococcus equi subsp. equi
           4047]
          Length = 589

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 130 EYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 159


>gi|225389153|ref|ZP_03758877.1| hypothetical protein CLOSTASPAR_02899 [Clostridium asparagiforme
           DSM 15981]
 gi|225044787|gb|EEG55033.1| hypothetical protein CLOSTASPAR_02899 [Clostridium asparagiforme
           DSM 15981]
          Length = 334

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 320 HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGYEE- 377
              + ++       +   G       ++ +++ P T+E++   GL+LAG+I    G    
Sbjct: 260 QALVMSVNPFANAQVCCGG-------VDTRQVDPATMESRCRPGLYLAGEILDVDGICGG 312

Query: 378 -----AAAQGLVAGINSAR 391
                A + G VAG N+AR
Sbjct: 313 YNLQFAWSSGAVAGRNAAR 331


>gi|224036327|pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
           Halogenase Cndh, A New Variant Of Fad-Dependent
           Halogenases
 gi|223940939|emb|CAQ43074.1| halogenase [Chondromyces crocatus]
          Length = 512

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 22/171 (12%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGL-GKGHLVRE 61
           +D+IVIGGG  G   A+  A  G    L+         IG       + G+     L  E
Sbjct: 8   FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDE 67

Query: 62  IDALD-----GLMGRVADA----AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           +         G   R             R  +   G A +  R + D  L R + ++ + 
Sbjct: 68  MKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVD 127

Query: 113 SQENLDVIQGEVAGFNTEKNIISSI--VMQDNSMI--RCSTVVLTTGTFLR 159
            +E     + EV     E      +     +   +      +V  +G   R
Sbjct: 128 VRE-----RHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR 173


>gi|242817795|ref|XP_002487019.1| squalene  monooxygenase Erg1 [Talaromyces stipitatus ATCC 10500]
 gi|218713484|gb|EED12908.1| squalene monooxygenase Erg1 [Talaromyces stipitatus ATCC 10500]
          Length = 491

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 18/171 (10%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREIDAL 65
           ++IG G AGC  A    K G    ++         I  +      GG+     +  +D L
Sbjct: 45  LIIGAGVAGCALAVAFGKQGRKVTVLERSLKEPDRI--VGELLQPGGVQALEQLGLLDCL 102

Query: 66  DGLMGRVADAAGIQFR--------VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
           DG+     +   + F           + K G + +G      R  + + ++    +  N+
Sbjct: 103 DGIDAVEVEGYDVIFHGTEVEIPYPADKKTGISPKGRSFHHGR--FIMKLREAARNTPNV 160

Query: 118 DVIQGEVAGFNTEKNIISSIVMQDNSM---IRCSTVVLTTGTFLRGVIHIG 165
            +I+         ++ +    +  +           ++  G   +      
Sbjct: 161 TIIEATATSLIKSQSEVIGAEVSVDGKSESFIAPLTIVADGYASKFRKDYH 211


>gi|189424069|ref|YP_001951246.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Geobacter lovleyi SZ]
 gi|189420328|gb|ACD94726.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Geobacter lovleyi SZ]
          Length = 522

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          + +D IV+G G AG  A+   A+ G   A+I  + 
Sbjct: 40 QQHDAIVVGAGIAGLSASWELAQKGFDVAVIEMQP 74


>gi|116072147|ref|ZP_01469415.1| Thioredoxin-disulfide reductase [Synechococcus sp. BL107]
 gi|116065770|gb|EAU71528.1| Thioredoxin-disulfide reductase [Synechococcus sp. BL107]
          Length = 319

 Score = 40.3 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV+++GGG AGC  A   A+    T +          +  NPA+G L   H
Sbjct: 8  DVLIVGGGPAGCACALYTARSSIKTQI----------LDKNPAVGALAITH 48


>gi|326386491|ref|ZP_08208114.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
          19370]
 gi|326209152|gb|EGD59946.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
          19370]
          Length = 545

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          R YD +VIGGGH G   A   A+ G   A++
Sbjct: 12 RVYDALVIGGGHNGLVCAGYLARAGLKVAVL 42


>gi|312142604|ref|YP_003994050.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Halanaerobium sp. 'sapolanicus']
 gi|311903255|gb|ADQ13696.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Halanaerobium sp. 'sapolanicus']
          Length = 527

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  + Y++I+IG G AG  AA  AA  G    + 
Sbjct: 1  MTMKRYELIIIGAGPAGLSAAIEAAAEGMQVIVF 34


>gi|307596297|ref|YP_003902614.1| glucose-inhibited division protein A [Vulcanisaeta distributa DSM
          14429]
 gi|307551498|gb|ADN51563.1| glucose-inhibited division protein A [Vulcanisaeta distributa DSM
          14429]
          Length = 433

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG GH G  A+ + A+ G    ++ H
Sbjct: 3  DVVIIGAGHNGLVASIILARAGLEVLVLDH 32


>gi|299134953|ref|ZP_07028144.1| dihydrolipoamide dehydrogenase [Afipia sp. 1NLS2]
 gi|298589930|gb|EFI50134.1| dihydrolipoamide dehydrogenase [Afipia sp. 1NLS2]
          Length = 472

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M++ S+DV+VIG G  G   A  AA+LG  TA++
Sbjct: 1  MVDTSFDVVVIGSGPGGYVTAIRAAQLGFKTAIM 34


>gi|296393186|ref|YP_003658070.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Segniliparus rotundus DSM 44985]
 gi|296180333|gb|ADG97239.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Segniliparus rotundus DSM 44985]
          Length = 468

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IGGG AG EAA VA   GA   ++
Sbjct: 3  DVVIIGGGPAGYEAALVARDQGADVVIL 30


>gi|294890743|ref|XP_002773292.1| Osmotic growth protein, putative [Perkinsus marinus ATCC 50983]
 gi|239878344|gb|EER05108.1| Osmotic growth protein, putative [Perkinsus marinus ATCC 50983]
          Length = 490

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREIDALD 66
          VIV+GGG AG  AA    + G    L       +     N      G  G L        
Sbjct: 4  VIVVGGGLAGLSAAHTVLERGGRVIL----LDKMSFCGGNSTKATSGINGALTATQRKQG 59


>gi|258571840|ref|XP_002544723.1| hypothetical protein UREG_04240 [Uncinocarpus reesii 1704]
 gi|237904993|gb|EEP79394.1| hypothetical protein UREG_04240 [Uncinocarpus reesii 1704]
          Length = 485

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGK 55
           +   D+++IG G AGC  A      G S  L+         I      P    A+  LG 
Sbjct: 32  HHEADIVIIGAGIAGCALAVALGNQGRSVLLLERSLKEPDRIVGELLQPDGVLALEKLGL 91

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-----AMQRE 110
            H +  IDA+  ++G      G   R+              Q +   +        ++R 
Sbjct: 92  RHCLEGIDAI-RVLGYNVVYHGDPVRIP-----YPQDANDKQFEGRCFHHGRLIVNLRRA 145

Query: 111 ILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSM---IRCSTVVLTTGT 156
             S  N+ V++ +       T  + +  +    N           V+  G 
Sbjct: 146 AQSTPNVTVVETKAVSLVKSTHGDQVLGVQCVTNGEKDFFFAPLTVVADGY 196


>gi|226361674|ref|YP_002779452.1| rubredoxin reductase [Rhodococcus opacus B4]
 gi|226240159|dbj|BAH50507.1| rubredoxin reductase [Rhodococcus opacus B4]
          Length = 424

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I R+  ++VIGGG  GCE AA A  LGA   ++    S +  +        +   H   +
Sbjct: 148 IQRTGSLLVIGGGLIGCEVAATARSLGAEVTVLERDPSLLSRIVPPDVSTMIAALHSDND 207

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKG 88
           +D    +       +G    V     G
Sbjct: 208 VDVCTNVALVSLHMSGDGSAVATAADG 234


>gi|209877136|ref|XP_002140010.1| GMC oxidoreductase family protein [Cryptosporidium muris RN66]
 gi|209555616|gb|EEA05661.1| GMC oxidoreductase family protein [Cryptosporidium muris RN66]
          Length = 701

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  YDVI+IG G +GC  A V A  G    L+
Sbjct: 32 NNDYDVIIIGAGASGCVMANVYANKGLKVLLL 63


>gi|254465376|ref|ZP_05078787.1| oxidoreductase, FAD-binding [Rhodobacterales bacterium Y4I]
 gi|206686284|gb|EDZ46766.1| oxidoreductase, FAD-binding [Rhodobacterales bacterium Y4I]
          Length = 356

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTAL 33
          D IVIGGG AG  AAA  A LG+ T L
Sbjct: 3  DFIVIGGGMAGISAAARLADLGSVTLL 29


>gi|307153184|ref|YP_003888568.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Cyanothece sp. PCC 7822]
 gi|306983412|gb|ADN15293.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Cyanothece sp. PCC 7822]
          Length = 462

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-------SMSCNPAIGGL 53
          M  + YD I+IGGG AG   A      G  TAL+    + IG        +     +   
Sbjct: 1  MDTQYYDDIIIGGGKAGKTLAPALVAHGRKTALVEGSLNMIGGSCINIACIPTKTLVASA 60

Query: 54 GKGHLVREIDALD 66
             + VR+  A  
Sbjct: 61 DIANSVRQGAAYG 73


>gi|195117316|ref|XP_002003195.1| GI23785 [Drosophila mojavensis]
 gi|193913770|gb|EDW12637.1| GI23785 [Drosophila mojavensis]
          Length = 888

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S DV+VIGGG AGC      AK G    L+
Sbjct: 35 KSADVVVIGGGSAGCHTVYHLAKRGIKAVLL 65


>gi|196013318|ref|XP_002116520.1| hypothetical protein TRIADDRAFT_31100 [Trichoplax adhaerens]
 gi|190580796|gb|EDV20876.1| hypothetical protein TRIADDRAFT_31100 [Trichoplax adhaerens]
          Length = 584

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 351 LFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCI-----CFSRTD 405
           L P  E+  +  +F AG +  +  Y  +    +     +AR  ++L         +  TD
Sbjct: 346 LLPNYESISVPNMFFAGALTHSLDYRHSGGCCIQGFRYTARALHRLLEWRYHQIPWPSTD 405

Query: 406 SYIGVMIDDLTSKGVLEP--YRMFTSRAE 432
            +   + D L ++       Y+MF + A+
Sbjct: 406 FWSNQITDYLITRINQASGLYQMFATLAD 434


>gi|218441184|ref|YP_002379513.1| geranylgeranyl reductase [Cyanothece sp. PCC 7424]
 gi|218173912|gb|ACK72645.1| geranylgeranyl reductase [Cyanothece sp. PCC 7424]
          Length = 405

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 4   VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 53

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   E Y    +RE+L 
Sbjct: 54  LPPEIIDRRVRKMKMISPSNIEVDINLDNQ---EEYIGMCRREVLD 96


>gi|22298920|ref|NP_682167.1| succinate dehydrogenase flavoprotein subunit [Thermosynechococcus
           elongatus BP-1]
 gi|22295101|dbj|BAC08929.1| succinate dehydrogenase flavoprotein subunit [Thermosynechococcus
           elongatus BP-1]
          Length = 581

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 65/205 (31%), Gaps = 47/205 (22%)

Query: 1   MINR----SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           M+N+     + V+++GGG AGC AA    +L   T +     +         A GG+   
Sbjct: 1   MLNKRTMQDFGVVIVGGGLAGCRAALEICRLAPETPIALVSKTHPIRSHSVAAQGGIAAT 60

Query: 57  HL------VREIDALDGLMGR--VADAAGI---------------QFRVLNVKKGPAVRG 93
                     E  A D + G   +AD   +                  VL   + P  R 
Sbjct: 61  LKNVDTEDSWESHAFDTVKGSDFLADQDAVAILAQEAPSVVIDLEHLGVLF-SRLPDGRI 119

Query: 94  ----------PRT--QADRELYRL--AMQREILSQENLDVIQGEVAGFNTEKNIISSIV- 138
                     PRT   AD+  + +   +   +L        +  V     E      +V 
Sbjct: 120 AQRPFGGHTHPRTCYAADKTGHAILHELYCNLLKYNVTFFSEWYVLRLIVEDQQAKGVVA 179

Query: 139 ----MQDNSMIRCSTVVLTTGTFLR 159
                    ++R   ++  TG + R
Sbjct: 180 YHIETGQLDILRAPAILFATGGYGR 204


>gi|84515376|ref|ZP_01002738.1| sarcosine oxidase, alpha subunit family [Loktanella vestfoldensis
           SKA53]
 gi|84510659|gb|EAQ07114.1| sarcosine oxidase, alpha subunit family [Loktanella vestfoldensis
           SKA53]
          Length = 965

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 57/199 (28%), Gaps = 61/199 (30%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D++VIG G AG  AA  A + G    L         +M           G L+RE++ +D
Sbjct: 162 DLLVIGAGPAGLMAALTAGRAGVDVILA----DEDSAMG----------GRLLREVEDVD 207

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVA 125
           G                   +  A+      A           ++ +  N+ ++ +  V 
Sbjct: 208 G-------------------RPAALWVADVLA-----------QLRALPNVRLMPRTTVT 237

Query: 126 GFNTEKN-----IISS--IVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178
           G   +        I       +    I     VL  G   R +         A    D P
Sbjct: 238 GAYDQGTYGALERIVGADAPGECFWRIVAKRSVLCAGALERSI---------AFPDNDRP 288

Query: 179 SNSLFNSFMKFDFDTGRLK 197
              L  +   +    G   
Sbjct: 289 GIMLAGAVRAYVTRWGVAP 307


>gi|328870623|gb|EGG18996.1| hypothetical protein DFA_02239 [Dictyostelium fasciculatum]
          Length = 634

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 25/166 (15%)

Query: 425 RMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
           RMF  +  +++ L        +     +   I + R +   + +++    +  L+ + L 
Sbjct: 169 RMFAQKKSFKVLL--------IQEKQRQQELIEKERAE--QERLEQERLEQERLEKIRLD 218

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
                      + D   +   E +       + L  I     +   L  ER++ E     
Sbjct: 219 QLEQERLE-KIRLDQLEQERLEKVRLDQLEQERLEKI-----RVYQLEQERIEQERLEQG 272

Query: 545 YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNE--LKEKLSILK 588
              ++ +E + ++ E    I        L  L  E   +E+L  ++
Sbjct: 273 RIEQERLEQERMEQERLEKI-------RLHQLEQERLEQERLEKIR 311


>gi|323356902|ref|YP_004223298.1| phytoene dehydrogenase [Microbacterium testaceum StLB037]
 gi|323273273|dbj|BAJ73418.1| phytoene dehydrogenase [Microbacterium testaceum StLB037]
          Length = 493

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          ++ SYD IV+G G  G  AA   A+ G S A+   +  T G
Sbjct: 1  MSESYDAIVVGSGPNGLAAAVTLARSGLSVAVYE-RADTFG 40


>gi|310798813|gb|EFQ33706.1| FAD binding domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 429

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 21/172 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSC----NPAIGGLGKGHLV 59
           ++I++G G AG  A     + G    ++        T  ++S     +P +   G     
Sbjct: 2   EIIIVGAGIAGLSAGIALRRAGHRVTILEQSALLQETGAAISIAPNASPVLRSWGFDIAK 61

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVR--GPRTQADRELYRLAMQREILSQEN- 116
             + A+    G + + + +Q  V N     A     P     R      +Q     ++  
Sbjct: 62  SGMVAIK--TGSILNGSDMQMMVPNYYANIAENYGSPIYAVHRVDLHDQLQTLATGEDGP 119

Query: 117 -----LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163
                L V    V        + +S+V  D +  + + V+   G       H
Sbjct: 120 GRPCKLHVRAAVVD----YDPVNASVVTIDGTTWQANLVIAANGVHSTAKEH 167


>gi|289640723|ref|ZP_06472895.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Frankia symbiont of Datisca glomerata]
 gi|289509612|gb|EFD30539.1| pyridine nucleotide-disulphide oxidoreductase dimerization region
           [Frankia symbiont of Datisca glomerata]
          Length = 469

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD++VIG G  G +AA  AAKLG   A++  +   +G +  N    G      +RE   
Sbjct: 3   DYDLLVIGSGPGGQKAAIAAAKLGRRVAIVD-RRDMVGGVCINT---GTIPSKTLREAVL 58

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVIQG 122
              L G        Q   L      +    RTQ    RE   + + R  LS+  + ++ G
Sbjct: 59  Y--LTGMTQREMYGQSYRLKDDITVSDLSSRTQHVIGRE---IDVIRNQLSRNRVALLIG 113

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
             +  +     I      D   +R   +++ TGT
Sbjct: 114 TASFVDPNTIAIIGSDQIDERRVRAEKIIIATGT 147


>gi|284793967|pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
          To A Triazaspirodimethoxybenzoyl Inhibitor
 gi|284793968|pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
          To A Triazaspirodimethoxybenzoyl Inhibitor
          Length = 466

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 5  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIF 64

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G V    GI +
Sbjct: 65 TKDAKAFGISGEVTFDYGIAY 85


>gi|311741011|ref|ZP_07714836.1| dihydrolipoyl dehydrogenase [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311303813|gb|EFQ79891.1| dihydrolipoyl dehydrogenase [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 486

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  YDV+V+G G  G  AA  AA+LG   A+I
Sbjct: 19 NEHYDVVVLGAGPGGYVAAIRAAQLGKKVAVI 50


>gi|257792430|ref|YP_003183036.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257476327|gb|ACV56647.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Eggerthella lenta DSM 2243]
          Length = 591

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           ++D++V+G G AG   A  AA+ GA   + +  +  I     N AIG  
Sbjct: 80  THDIVVVGAGMAGLCTAVSAAEQGADVIVFSASSKPISRGGSNHAIGSK 128


>gi|215425684|ref|ZP_03423603.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis T92]
 gi|289748949|ref|ZP_06508327.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T92]
 gi|289689536|gb|EFD56965.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T92]
          Length = 464

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G V    GI +
Sbjct: 63 TKDAKAFGISGEVTFDYGIAY 83


>gi|163743414|ref|ZP_02150793.1| Dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis 2.10]
 gi|161383244|gb|EDQ07634.1| Dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis 2.10]
          Length = 460

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IVIGGG  G  AA  AA+LG   A +
Sbjct: 4  YDLIVIGGGPGGYVAAIRAAQLGLKVACV 32


>gi|154493367|ref|ZP_02032687.1| hypothetical protein PARMER_02704 [Parabacteroides merdae ATCC
          43184]
 gi|154086577|gb|EDN85622.1| hypothetical protein PARMER_02704 [Parabacteroides merdae ATCC
          43184]
          Length = 447

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA  G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAEKAAAGGLSTVLFEKN 34


>gi|154496874|ref|ZP_02035570.1| hypothetical protein BACCAP_01167 [Bacteroides capillosus ATCC
           29799]
 gi|150273832|gb|EDN00945.1| hypothetical protein BACCAP_01167 [Bacteroides capillosus ATCC
           29799]
          Length = 650

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPA 49
           V+V GGG +G E A   A  G    ++        GS    P+
Sbjct: 513 VVVCGGGLSGLECALALAMKGKKVTVVDMIPVENFGSGQVRPS 555


>gi|146342359|ref|YP_001207407.1| putative NADH-dependent flavin oxidoreductase N-methylproline
           demethylase [Bradyrhizobium sp. ORS278]
 gi|146195165|emb|CAL79190.1| putative NADH-dependent flavin oxidoreductase; putative
           N-methylproline demethylase (Stachydrine utilization
           protein stcD) [Bradyrhizobium sp. ORS278]
          Length = 667

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+V+GGG AG EAA VAA LG    L
Sbjct: 398 VLVVGGGPAGLEAARVAAALGHHVTL 423


>gi|104783035|ref|YP_609533.1| D-amino acid dehydrogenase small subunit family protein
          [Pseudomonas entomophila L48]
 gi|95112022|emb|CAK16749.1| putative D-amino acid dehydrogenase, small subunit family protein
          [Pseudomonas entomophila L48]
          Length = 414

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N   D+ V+G G  G   A   A+ G    L+
Sbjct: 1  MSNTDTDIAVVGAGIVGVACALQLARQGQRVLLV 34


>gi|120403346|ref|YP_953175.1| alanine dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119956164|gb|ABM13169.1| L-alanine dehydrogenase [Mycobacterium vanbaalenii PYR-1]
          Length = 371

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           V+VIGGG AG  AAAVA  +GA   +     +T+
Sbjct: 171 VVVIGGGMAGDNAAAVAWGMGAHVTVFDLNVNTL 204


>gi|45657043|ref|YP_001129.1| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600280|gb|AAS69766.1| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 490

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
           +  SYD+ VIG G  G  AA  AA+LG +  +I       G +     C P    L   H
Sbjct: 19  MPESYDLTVIGAGPGGYVAAIRAAQLGMNVCIIE--KDKPGGICLNWGCIPTKALLESAH 76

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
           L+ ++ +       ++D       ++   +  A 
Sbjct: 77  LLEKLHSAKEYGINLSDPKPDFAAIIRRSRNVAE 110


>gi|75766096|pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
          Mycobacterium Tuberculosis
 gi|75766097|pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
          Mycobacterium Tuberculosis
          Length = 464

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G V    GI +
Sbjct: 63 TKDAKAFGISGEVTFDYGIAY 83


>gi|119776352|ref|YP_929092.1| fumarate reductase flavoprotein subunit [Shewanella amazonensis
           SB2B]
 gi|119768852|gb|ABM01423.1| succinate dehydrogenase subunit A [Shewanella amazonensis SB2B]
          Length = 679

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 22/224 (9%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGSMSCNPAIGGLGKGHLVRE 61
           D +V+G G AG   A  A + G  T +++   +              ++G   KG    E
Sbjct: 7   DCLVVGAGLAGLRVAIAAKERGHDTLVLSLIPAKRSHSAAAQGGMQASLGNTVKGLGDNE 66

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAM----QREILSQENL 117
                  + + +D    Q  V  +    A +  R  A+  +    +    +  +++ E +
Sbjct: 67  DVHFQDTV-KGSDWGCDQT-VARMFAHCAPKAVRELANWGVPWTRVTKGPREVVVNAERI 124

Query: 118 DVIQGEVAGFNTEKNIISSIV------MQDNS----MIRCSTVVLTTGTFLRGVIHIGKL 167
            + + E A                     D +    +       ++ G  +   +    +
Sbjct: 125 TIEEAEAAHGLINARDFGGTKKWRTCYTADGTGHSLLYAVDNKAISLGIPVHERVEALSI 184

Query: 168 KIPAGRMGDSPSNSL-FNSFMKFDFDTGRLKTGTPARLDGKTII 210
                R     +  L       +   +  + TG   R+   +  
Sbjct: 185 IHDGERCHGVVARCLITGELRAYIGKSTTIATGGYGRIYEVSTN 228


>gi|15607603|ref|NP_214976.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis H37Rv]
 gi|15839851|ref|NP_334888.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          CDC1551]
 gi|31791641|ref|NP_854134.1| dihydrolipoamide dehydrogenase [Mycobacterium bovis AF2122/97]
 gi|121636377|ref|YP_976600.1| dihydrolipoamide dehydrogenase [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148660228|ref|YP_001281751.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|148821660|ref|YP_001286414.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis F11]
 gi|167970718|ref|ZP_02552995.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis H37Ra]
 gi|215402214|ref|ZP_03414395.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          02_1987]
 gi|215409979|ref|ZP_03418787.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          94_M4241A]
 gi|215429284|ref|ZP_03427203.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          EAS054]
 gi|215444559|ref|ZP_03431311.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis T85]
 gi|218752094|ref|ZP_03530890.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis GM
          1503]
 gi|219556281|ref|ZP_03535357.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis T17]
 gi|224988849|ref|YP_002643536.1| dihydrolipoamide dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253797389|ref|YP_003030390.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          KZN 1435]
 gi|254230809|ref|ZP_04924136.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis C]
 gi|254363426|ref|ZP_04979472.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          str. Haarlem]
 gi|254549409|ref|ZP_05139856.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|260185329|ref|ZP_05762803.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis
          CPHL_A]
 gi|260199460|ref|ZP_05766951.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis T46]
 gi|260203613|ref|ZP_05771104.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis K85]
 gi|289441843|ref|ZP_06431587.1| dihydrolipoyl dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289446004|ref|ZP_06435748.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          CPHL_A]
 gi|289552712|ref|ZP_06441922.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          KZN 605]
 gi|289568380|ref|ZP_06448607.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T17]
 gi|289573048|ref|ZP_06453275.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          K85]
 gi|289744159|ref|ZP_06503537.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          02_1987]
 gi|289752493|ref|ZP_06511871.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          EAS054]
 gi|289756535|ref|ZP_06515913.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T85]
 gi|289760579|ref|ZP_06519957.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis GM
          1503]
 gi|294995967|ref|ZP_06801658.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis 210]
 gi|297632946|ref|ZP_06950726.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis KZN
          4207]
 gi|297729921|ref|ZP_06959039.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis KZN
          R506]
 gi|298523939|ref|ZP_07011348.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          94_M4241A]
 gi|306774559|ref|ZP_07412896.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu001]
 gi|306779307|ref|ZP_07417644.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu002]
 gi|306783097|ref|ZP_07421419.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu003]
 gi|306787465|ref|ZP_07425787.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu004]
 gi|306792016|ref|ZP_07430318.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu005]
 gi|306796202|ref|ZP_07434504.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu006]
 gi|306802060|ref|ZP_07438728.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu008]
 gi|306806271|ref|ZP_07442939.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu007]
 gi|306966467|ref|ZP_07479128.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu009]
 gi|306970663|ref|ZP_07483324.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu010]
 gi|307078387|ref|ZP_07487557.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu011]
 gi|307082946|ref|ZP_07492059.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu012]
 gi|313657250|ref|ZP_07814130.1| dihydrolipoamide dehydrogenase [Mycobacterium tuberculosis KZN
          V2475]
 gi|54036981|sp|P66005|DLDH_MYCBO RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of alpha keto acid dehydrogenase complexes
 gi|54041033|sp|P66004|DLDH_MYCTU RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of alpha keto acid dehydrogenase complexes
 gi|2909538|emb|CAA17417.1| DIHYDROLIPOAMIDE DEHYDROGENASE LPD (LIPOAMIDE REDUCTASE (NADH))
          (LIPOYL DEHYDROGENASE) (DIHYDROLIPOYL DEHYDROGENASE)
          (DIAPHORASE) [Mycobacterium tuberculosis H37Rv]
 gi|13879985|gb|AAK44702.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Mycobacterium tuberculosis CDC1551]
 gi|31617227|emb|CAD93334.1| DIHYDROLIPOAMIDE DEHYDROGENASE LPD (LIPOAMIDE REDUCTASE (NADH))
          (LIPOYL DEHYDROGENASE) (DIHYDROLIPOYL DEHYDROGENASE)
          (DIAPHORASE) [Mycobacterium bovis AF2122/97]
 gi|121492024|emb|CAL70487.1| Dihydrolipoamide dehydrogenase lpd [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124599868|gb|EAY58878.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis C]
 gi|134148940|gb|EBA40985.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          str. Haarlem]
 gi|148504380|gb|ABQ72189.1| dihydrolipoamide dehydrogenase Lpd [Mycobacterium tuberculosis
          H37Ra]
 gi|148720187|gb|ABR04812.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          F11]
 gi|224771962|dbj|BAH24768.1| dihydrolipoamide dehydrogenase [Mycobacterium bovis BCG str.
          Tokyo 172]
 gi|253318892|gb|ACT23495.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          KZN 1435]
 gi|289414762|gb|EFD12002.1| dihydrolipoyl dehydrogenase [Mycobacterium tuberculosis T46]
 gi|289418962|gb|EFD16163.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          CPHL_A]
 gi|289437344|gb|EFD19837.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          KZN 605]
 gi|289537479|gb|EFD42057.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          K85]
 gi|289542133|gb|EFD45782.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T17]
 gi|289684687|gb|EFD52175.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          02_1987]
 gi|289693080|gb|EFD60509.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          EAS054]
 gi|289708085|gb|EFD72101.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis GM
          1503]
 gi|289712099|gb|EFD76111.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          T85]
 gi|298493733|gb|EFI29027.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          94_M4241A]
 gi|308216908|gb|EFO76307.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu001]
 gi|308327752|gb|EFP16603.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu002]
 gi|308332114|gb|EFP20965.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu003]
 gi|308335842|gb|EFP24693.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu004]
 gi|308339505|gb|EFP28356.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu005]
 gi|308343371|gb|EFP32222.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu006]
 gi|308347280|gb|EFP36131.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu007]
 gi|308351210|gb|EFP40061.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu008]
 gi|308355863|gb|EFP44714.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu009]
 gi|308359784|gb|EFP48635.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu010]
 gi|308363724|gb|EFP52575.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu011]
 gi|308367380|gb|EFP56231.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          SUMu012]
 gi|323721136|gb|EGB30198.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          CDC1551A]
 gi|326902288|gb|EGE49221.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          W-148]
 gi|328457175|gb|AEB02598.1| dihydrolipoamide dehydrogenase lpd [Mycobacterium tuberculosis
          KZN 4207]
          Length = 464

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLV 59
           YDV+V+G G  G  AA  AA+LG STA++  K        +G +     +      H+ 
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIF 62

Query: 60 REIDALDGLMGRVADAAGIQF 80
           +     G+ G V    GI +
Sbjct: 63 TKDAKAFGISGEVTFDYGIAY 83


>gi|332980714|ref|YP_004462155.1| NADH:flavin oxidoreductase/NADH oxidase [Mahella australiensis 50-1
           BON]
 gi|332698392|gb|AEE95333.1| NADH:flavin oxidoreductase/NADH oxidase [Mahella australiensis 50-1
           BON]
          Length = 668

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV+VIGGG AG EAA VA   G    L 
Sbjct: 406 DVMVIGGGVAGMEAARVATLRGHKVTLY 433


>gi|317402880|gb|EFV83422.1| hypothetical protein HMPREF0005_01767 [Achromobacter xylosoxidans
          C54]
          Length = 416

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          M   S+ V VIGGG AG  AA   A  G    +       + S+     + G G  +L  
Sbjct: 1  MSASSWRVAVIGGGPAGLMAAEGLAARGIQVDVY----DAMPSVGRKFLMAGRGGLNLTH 56

Query: 61 EIDA 64
             A
Sbjct: 57 SEAA 60


>gi|310828036|ref|YP_003960393.1| hypothetical protein ELI_2448 [Eubacterium limosum KIST612]
 gi|308739770|gb|ADO37430.1| hypothetical protein ELI_2448 [Eubacterium limosum KIST612]
          Length = 998

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-SCNPAIGGLGK--GHLVREIDA 64
           V +IGGG AG  AA   A+ G S  +     S  G +    P      +   + V+ ++A
Sbjct: 543 VAIIGGGPAGISAAYFLARNGISATIFERNESLGGIVRHVVPEFRVDAEIVENDVKLMEA 602

Query: 65  LD 66
             
Sbjct: 603 YG 604


>gi|303248465|ref|ZP_07334724.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
 gi|302490176|gb|EFL50095.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfovibrio fructosovorans JJ]
          Length = 479

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+ V+GGG AG   AA AA+LG    L+
Sbjct: 6  DYDLAVLGGGAAGLTVAAGAARLGVKVLLV 35


>gi|269215950|ref|ZP_06159804.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
 gi|269130209|gb|EEZ61287.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
          Length = 641

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
            +DV+V+GGGH+G  AA  A   GA+  ++  + 
Sbjct: 78  EFDVVVLGGGHSGLMAACGAVDEGATVGVVEMQP 111


>gi|284031496|ref|YP_003381427.1| dihydrolipoamide dehydrogenase [Kribbella flavida DSM 17836]
 gi|283810789|gb|ADB32628.1| dihydrolipoamide dehydrogenase [Kribbella flavida DSM 17836]
          Length = 465

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   +DV+V+G G  G  AA  AA+LG  TA+I  K
Sbjct: 1  MASHFDVVVLGAGPGGYVAAIRAAQLGLKTAIIEKK 36


>gi|226360752|ref|YP_002778530.1| oxidoreductase [Rhodococcus opacus B4]
 gi|226239237|dbj|BAH49585.1| putative oxidoreductase [Rhodococcus opacus B4]
          Length = 531

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIG 51
          +++ S DV+VIGGG AG  AA  A + GA   L+             S  G    +P   
Sbjct: 4  LLDLSTDVLVIGGGPAGTWAALRARQSGADVVLVDKGYCGTSGATAPSGTGVWYVDPDPS 63

Query: 52 GLGKGHLVREIDALDG------LMGRVADAAGIQFRVL 83
                  RE   L G       M RV D       +L
Sbjct: 64 ARATAKASRE--TLGGHLADHHWMDRVLDQTYTNMNLL 99


>gi|254428103|ref|ZP_05041810.1| conserved hypothetical protein TIGR00275 [Alcanivorax sp. DG881]
 gi|196194272|gb|EDX89231.1| conserved hypothetical protein TIGR00275 [Alcanivorax sp. DG881]
          Length = 401

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV+VIG G AG   AA AA  G    +                + G G+ +
Sbjct: 13 DVVVIGAGAAGLMCAATAAYQGHRVLV----LDHANKAGKKILMSGGGRCN 59


>gi|167921764|ref|ZP_02508855.1| oxidoreductase [Burkholderia pseudomallei BCC215]
          Length = 218

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLVRE 61
          D+ VIG G  G  AA   A+ G S A++        +   N    IGG   G    E
Sbjct: 34 DICVIGAGLTGISAALNLAERGHSVAVLEASKVGWAASGRNGGQLIGGFACGIDAFE 90


>gi|224072659|ref|XP_002303826.1| predicted protein [Populus trichocarpa]
 gi|118488346|gb|ABK95991.1| unknown [Populus trichocarpa]
 gi|222841258|gb|EEE78805.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--KGHLVREI 62
            +D+ VIG G  G  AA  +A  GA   +       I S   N  +GG    +G + ++I
Sbjct: 24  DFDLFVIGAGSGGVRAARFSANYGAKVGICELPFHPISS-EVNGGVGGTCVLRGCVPKKI 82

Query: 63  DALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                   G + DA    + +         +  + ++D  +    + + +LS   + + +
Sbjct: 83  LVYGANFGGEIEDARNYGWEINEKVDFNWKKLLQKKSDEIVRLNGIYKRLLSNAGVKLYE 142

Query: 122 GE--VAGFN-TEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           GE  VAG N  E   +    ++         +++ TG+
Sbjct: 143 GEGKVAGPNEVELTQLDGTKLK----YSAKHILIATGS 176


>gi|160902305|ref|YP_001567886.1| dihydrolipoamide dehydrogenase [Petrotoga mobilis SJ95]
 gi|160359949|gb|ABX31563.1| dihydrolipoamide dehydrogenase [Petrotoga mobilis SJ95]
          Length = 451

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 35/144 (24%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVRE 61
           YDV+VIG G  G  AA   ++LG   A+I      +G       C P    L   HL  E
Sbjct: 2   YDVVVIGSGPGGYVAAIRLSQLGKKVAVIE--KENLGGTCTNKGCIPTKAMLTSSHLYEE 59

Query: 62  I----DALDGLMGRVADA-----AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREIL 112
           I    + L   +G V        + ++  VL  KKG                      +L
Sbjct: 60  ILKKSNKLGIKVGEVTYEISEIMSHMKKIVLQSKKG-------------------VEYLL 100

Query: 113 SQENLDVIQGEVAGFNTEKNIISS 136
            + ++D+IQG VA    + +I   
Sbjct: 101 KKNHIDLIQG-VAEIIDKNHIKVG 123


>gi|89054019|ref|YP_509470.1| NADH:flavin oxidoreductase/NADH oxidase [Jannaschia sp. CCS1]
 gi|88863568|gb|ABD54445.1| NADH:flavin oxidoreductase/NADH oxidase [Jannaschia sp. CCS1]
          Length = 681

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V++IG G AG EAA VAA+ G    ++       G + 
Sbjct: 389 VVIIGAGPAGLEAARVAAERGHDVTVLEAAPEAGGQVR 426


>gi|332304836|ref|YP_004432687.1| HI0933 family protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172165|gb|AEE21419.1| HI0933 family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 393

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +  DVIVIG G AG   AA A K G S A++ H
Sbjct: 2  KKVDVIVIGAGAAGLFCAAQAGKRGRSVAVLDH 34


>gi|323451411|gb|EGB07288.1| hypothetical protein AURANDRAFT_28049 [Aureococcus
          anophagefferens]
          Length = 319

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          M     DV+++GGG AGC  A   ++    T ++      +G+++    I  
Sbjct: 1  MEEVECDVVIVGGGPAGCTCALYTSRADLKTVIVDKNP-AVGALAITSHIAN 51


>gi|313896201|ref|ZP_07829754.1| Tat pathway signal sequence domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975000|gb|EFR40462.1| Tat pathway signal sequence domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 582

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV+++G G AG  AA  A++ GAS  ++
Sbjct: 77  DVVIVGAGLAGLTAARAASEHGASVLVM 104


>gi|312142880|ref|YP_003994326.1| glutaredoxin 3 [Halanaerobium sp. 'sapolanicus']
 gi|311903531|gb|ADQ13972.1| glutaredoxin 3 [Halanaerobium sp. 'sapolanicus']
          Length = 395

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
           +D+ VIG G AG  AA  A + G    L+    
Sbjct: 96  WDLTVIGAGPAGMTAAIYAVRKGLKVLLVARDI 128


>gi|296159473|ref|ZP_06842297.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. Ch1-1]
 gi|295890181|gb|EFG69975.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. Ch1-1]
          Length = 390

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++++D  VIGGG  G  AA    + G   AL+  
Sbjct: 5  HQTFDAAVIGGGLVGKTAALALTQGGLRVALLAQ 38


>gi|255318872|ref|ZP_05360098.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          radioresistens SK82]
 gi|262378871|ref|ZP_06072028.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          radioresistens SH164]
 gi|255304128|gb|EET83319.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          radioresistens SK82]
 gi|262300156|gb|EEY88068.1| succinate dehydrogenase, flavoprotein subunit [Acinetobacter
          radioresistens SH164]
          Length = 611

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          N ++D +++GGG +G  A+   A+ G   A++T
Sbjct: 15 NLTFDAVIVGGGGSGMRASYQLAQAGLRVAVLT 47


>gi|225868338|ref|YP_002744286.1| dihydrolipoamide dehydrogenase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701614|emb|CAW98875.1| dihydrolipoamide dehydrogenase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 589

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YD+IV+GGG AG  AA   A+LG   A++
Sbjct: 130 EYDIIVVGGGPAGYYAAIRGAQLGGKIAIV 159


>gi|242815650|ref|XP_002486611.1| phenol 2-monooxygenase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714950|gb|EED14373.1| phenol 2-monooxygenase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 630

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 59/215 (27%), Gaps = 34/215 (15%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG---HLVREID 63
           DV+++G G AG  AA   AK G    +I            N  + G   G     V  +D
Sbjct: 8   DVLIVGAGPAGLIAAWWMAKCGIRLRVIDKDP--------NELLHGRADGMRPRTVEILD 59

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN------- 116
           ++   M          F +L+            Q    L      R++L+          
Sbjct: 60  SMGSRMMETI--TQESFPMLSSHNWMRDEDDNIQRVERLDMYEDHRKVLATPFHSQALSQ 117

Query: 117 ---LDVIQGEVAGFNTEKNIISSIVMQDNSMI--------RCSTVVLTTGTFLRGVIHIG 165
                +IQ  +        ++   V                   + +T     +      
Sbjct: 118 GRIERIIQDAILDLTNGSVVVERGVAALGLEYDQSLEQDHSAYPIAVTIHKQKQNQNQTE 177

Query: 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           K+K       D   + L     +  + T    T T
Sbjct: 178 KVKAKYLIGCDGARSWL---RRELGYKTEGSNTNT 209


>gi|219127878|ref|XP_002184153.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404384|gb|EEC44331.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 463

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          VIV+G G AG   A   A+ G    L+
Sbjct: 7  VIVVGAGPAGLFCALALARQGFRPILL 33


>gi|209516538|ref|ZP_03265392.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. H160]
 gi|209502979|gb|EEA02981.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia sp. H160]
          Length = 390

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++++D  VIGGG  G  AA    + G   AL+  
Sbjct: 5  HQTFDAAVIGGGLVGKTAALALTQGGLRVALLAQ 38


>gi|170746893|ref|YP_001753153.1| succinate dehydrogenase flavoprotein subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653415|gb|ACB22470.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 605

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 50/218 (22%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLG--- 54
           + ++DV+++G G AG  A    ++ G  TA IT     ++ T+ +    + ++G +G   
Sbjct: 17  DHAFDVVIVGAGGAGLRATVGCSEAGLRTACITKVFPTRSHTVAAQGGISASLGNMGPDD 76

Query: 55  ---------KGH------------------LVREIDALD-----GLMGRVADAAGIQFRV 82
                    KG                    V E++           G++          
Sbjct: 77  WRWHMYDTVKGSDWLGDQDAIEYLVRNAPAAVYELEHWGVPFSRTEEGKIYQRPFGGM-T 135

Query: 83  LNVKKGPAVRGPRTQADRELY---RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV- 138
            +  KG A R     ADR  +        + + +Q +  +    +     ++     ++ 
Sbjct: 136 TDYGKGTAQRTCAA-ADRTGHAMLHTLYGQAVKNQTDFFIEYFALDLIMDDEGRCRGVIA 194

Query: 139 ----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                 +    R    +L TG + R            G
Sbjct: 195 LDQATGEIHRFRAQMTILATGGYGRAYFSATSAHTCTG 232


>gi|169334744|ref|ZP_02861937.1| hypothetical protein ANASTE_01150 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257482|gb|EDS71448.1| hypothetical protein ANASTE_01150 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 453

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVIVIG G  G  AA  AA+ G  T LI
Sbjct: 2  YDVIVIGAGPGGYLAAERAAEGGKKTLLI 30


>gi|163740107|ref|ZP_02147509.1| dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis BS107]
 gi|161386601|gb|EDQ10968.1| dihydrolipoamide dehydrogenase [Phaeobacter gallaeciensis BS107]
          Length = 460

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IVIGGG  G  AA  AA+LG   A +
Sbjct: 4  YDLIVIGGGPGGYVAAIRAAQLGLKVACV 32


>gi|159030412|emb|CAO91310.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 548

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHL 58
           SYDVI+IG GH G   AA   K G    L+  ++   G+ +     P +    K +L
Sbjct: 2  ESYDVILIGAGHNGLVCAAYLLKAGYRVLLLEQRSVPGGAATTEAVIPDLAPDFKFNL 59


>gi|149185131|ref|ZP_01863448.1| putative ferredoxin reductase component (dioxygenase)
          [Erythrobacter sp. SD-21]
 gi|148831242|gb|EDL49676.1| putative ferredoxin reductase component (dioxygenase)
          [Erythrobacter sp. SD-21]
          Length = 408

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
            YDV+++G GH G +AA    + G   +++      
Sbjct: 2  EHYDVVIVGSGHGGAQAAIALRQAGHEDSILMVSRDR 38


>gi|187925477|ref|YP_001897119.1| ubiquinone biosynthesis hydroxylase family protein [Burkholderia
          phytofirmans PsJN]
 gi|187716671|gb|ACD17895.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
          [Burkholderia phytofirmans PsJN]
          Length = 390

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          ++++D  VIGGG  G  AA    + G   AL+  
Sbjct: 5  HQTFDAAVIGGGLVGKTAALALTQGGLRVALLAQ 38


>gi|83950632|ref|ZP_00959365.1| 2,4-dienoyl-CoA reductase [Roseovarius nubinhibens ISM]
 gi|83838531|gb|EAP77827.1| 2,4-dienoyl-CoA reductase [Roseovarius nubinhibens ISM]
          Length = 686

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           + V+G G AG  AA  AA+ G   AL 
Sbjct: 389 IAVVGAGPAGLSAALTAAQRGHKVALF 415


>gi|103487315|ref|YP_616876.1| HI0933-like protein [Sphingopyxis alaskensis RB2256]
 gi|98977392|gb|ABF53543.1| HI0933-like protein [Sphingopyxis alaskensis RB2256]
          Length = 402

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           YD IV+G G AG   AAVA + G    L          +     I G G+ +
Sbjct: 17 DYDAIVLGAGAAGLMCAAVAGQRGRRVLL----LDHADEVGKKILISGGGRCN 65


>gi|71023459|ref|XP_761959.1| hypothetical protein UM05812.1 [Ustilago maydis 521]
 gi|46101524|gb|EAK86757.1| hypothetical protein UM05812.1 [Ustilago maydis 521]
          Length = 541

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI--THKTSTIGSMSCNPA 49
          +   YD IVIGGG AG     +  KLG    L         I  ++C P 
Sbjct: 1  MTEHYDAIVIGGGFAGIYHLYMLRKLGFKVHLYDAAPDFGGIWRLNCYPG 50


>gi|325293889|ref|YP_004279753.1| N-methylproline demethylase [Agrobacterium sp. H13-3]
 gi|325061742|gb|ADY65433.1| N-methylproline demethylase [Agrobacterium sp. H13-3]
          Length = 678

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 13/88 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++G G AG EAA V A+ G    +                 GG  +     E      
Sbjct: 388 VVIVGAGPAGLEAARVCAERGHEVVVFE----------AANDPGGQIRLTAQSERRR--- 434

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPR 95
            M  + D    Q   L V          
Sbjct: 435 EMISIIDWRMSQCERLGVTFHFNSWAEA 462


>gi|297618217|ref|YP_003703376.1| NADH:flavin oxidoreductase/NADH oxidase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146054|gb|ADI02811.1| NADH:flavin oxidoreductase/NADH oxidase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 665

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+VIGGG AG EAA VAA  G    L
Sbjct: 378 VLVIGGGPAGMEAARVAATRGHDVTL 403



 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA 49
           V++IGGG  GCE A   A++G      T    T+  +  N A
Sbjct: 501 VVIIGGGAVGCEVALFIARMG------TIDADTVKFLLLNEA 536


>gi|225450042|ref|XP_002273156.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1010

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 29/182 (15%)

Query: 415 LTSKGVLEPYRMFTSRAEYRISL--RPDNA-----DNRLTPIGMK-------LGCIGERR 460
           +  +G  EPY  +   +  R+    R + A       R T IG +        G +   R
Sbjct: 499 VFGEGESEPYVHYHQVSRLRLLFPCRQNQAASIEDKFRDTIIGHEKEKNRLMYGHLHTVR 558

Query: 461 QKRFAKYIQEYNFLRSLLK-----SLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSI 515
            +   + ++  +F + +LK     S +   +N  ST +   +  +    Y  L       
Sbjct: 559 YEILERKLELVDFHKLMLKVQASFSPLENGENKHSTPLVNDKLSEEELGYRMLRMYHRKT 618

Query: 516 QNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPA 575
           +NL+S+ PD R  +              +    + I       +    +  +     +P 
Sbjct: 619 ENLYSLKPDLRLLTLE---------KAKSSAEERQIFISSYLQDLHLYLSTNIG-LKVPG 668

Query: 576 LS 577
           LS
Sbjct: 669 LS 670


>gi|212531645|ref|XP_002145979.1| phenol monooxygenase, putative [Penicillium marneffei ATCC 18224]
 gi|210071343|gb|EEA25432.1| phenol monooxygenase, putative [Penicillium marneffei ATCC 18224]
          Length = 689

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI--GGLGKGHLVR 60
           +  Y+V+VIG G AG     + A+ G S         ++      P     G   G   R
Sbjct: 42  DEKYEVVVIGAGPAGLFLTLLLARYGLS--------DSLACFDKKPGTLKAGQADGLQPR 93

Query: 61  EIDALD--GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            ++     GL   + D       V     G   +G     +R  +   +      +  + 
Sbjct: 94  TLEVFSTLGLHHEILDEGCHMSEVAFWNPGTTQKG----IERTAFVPDVVVPARYKHEVT 149

Query: 119 VIQGEVAGFNTEKNI 133
           + QG +     E   
Sbjct: 150 IHQGRIERILEEDFQ 164


>gi|193084260|gb|ACF09922.1| putative dehydrogenase flavoprotein [uncultured marine group III
          euryarchaeote KM3-28-E8]
          Length = 571

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R YDV+V+G G AG  AA  A  LGAS  ++
Sbjct: 37 DRKYDVVVVGTGAAGLSAALKARLLGASVLVV 68


>gi|332981474|ref|YP_004462915.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Mahella australiensis 50-1
          BON]
 gi|332699152|gb|AEE96093.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Mahella australiensis 50-1 BON]
          Length = 1009

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          V+V+GGG AG +A+   A++G    L+  + S  G M
Sbjct: 5  VMVVGGGIAGIQASLDLAEMGIPVYLVESQPSIGGRM 41


>gi|319942088|ref|ZP_08016407.1| hypothetical protein HMPREF9464_01626 [Sutterella wadsworthensis
          3_1_45B]
 gi|319804472|gb|EFW01350.1| hypothetical protein HMPREF9464_01626 [Sutterella wadsworthensis
          3_1_45B]
          Length = 511

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          D++++G G AG  AA  AA+ GA+  L+   
Sbjct: 36 DIVIVGAGSAGLTAAVQAAEKGANVVLLEKN 66


>gi|291518846|emb|CBK74067.1| Thioredoxin reductase [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK--TSTIGSMSC 46
            +DV+VIG G AG EAA  A     +  L+  K  +  +     
Sbjct: 2  ERFDVVVIGTGPAGLEAAITAKVRNKTVLLLGGKGSSDKVSKAHT 46


>gi|242239914|ref|YP_002988095.1| nitrite reductase (NAD(P)H), large subunit [Dickeya dadantii
           Ech703]
 gi|242131971|gb|ACS86273.1| nitrite reductase (NAD(P)H), large subunit [Dickeya dadantii
           Ech703]
          Length = 1373

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V VIGGG  G EAAA   + GA   L+
Sbjct: 144 VAVIGGGLLGIEAAAALRQRGADVTLL 170


>gi|239629405|ref|ZP_04672436.1| predicted protein [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|239528091|gb|EEQ67092.1| predicted protein [Lactobacillus paracasei subsp. paracasei
          8700:2]
          Length = 425

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          ++D+IVIGGG AG  AA  AA      A++            N  + GL + +
Sbjct: 2  NFDLIVIGGGTAGVLAAIKAASKKVEVAIVEQH----SVCGGNATLSGLAEFN 50


>gi|254499990|ref|ZP_05112143.1| mercuric reductase [Labrenzia alexandrii DFL-11]
 gi|222441457|gb|EEE48134.1| mercuric reductase [Labrenzia alexandrii DFL-11]
          Length = 459

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 11  IGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGSMSCNPAIGGLGKGHLVREIDAL 65
           +G G AG  AA  AA+ GA  ALI H         +G +     I  +   H  +     
Sbjct: 2   VGAGSAGFSAAITAAEEGARVALIGHGVIGGTCVNVGCVPSKAMIRAMEIMHAPKAARRF 61

Query: 66  DGL--MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
           DG+    ++ D A +            +R  +   D +L        +    N+  ++GE
Sbjct: 62  DGIEATAQITDWAAV------------IRQKQALVD-DLRAAKYIDVLPQHNNIAYLEGE 108

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                  + I    +  +  +I+   ++L TG+
Sbjct: 109 A------RFIAGGQLTLEGEVIKAEKILLATGS 135


>gi|254501203|ref|ZP_05113354.1| Glycine cleavage T-protein (aminomethyl transferase) [Labrenzia
           alexandrii DFL-11]
 gi|222437274|gb|EEE43953.1| Glycine cleavage T-protein (aminomethyl transferase) [Labrenzia
           alexandrii DFL-11]
          Length = 966

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+V+G G AG +AA  A + G    L+       G    +P      + H +  ++A+ 
Sbjct: 160 DVLVVGSGPAGLQAALTAVQAGRDVLLVEQDFELGGDYLNDPG----AEKHRLERVNAVK 215

Query: 67  GLMGRVADAA 76
           G   RV    
Sbjct: 216 GAGVRVMTRT 225


>gi|209572891|sp|Q8TUV8|GGR2_METKA RecName: Full=Digeranylgeranylglycerophospholipid reductase 2;
           Short=DGGGPL reductase 2; AltName:
           Full=2,3-di-O-geranylgeranylglyceryl phosphate reductase
           2; AltName: Full=Geranylgeranyl reductase 2; Short=GGR 2
          Length = 396

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G G AG  AA  AA+ G    ++  K        C   I   G  H   E   
Sbjct: 2   EFDVVVVGAGPAGSVAAWAAAEAGCDVLILERKAEIGVPKQCAEGISAHGLEHAGIEPQD 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                    + +       N K+            R   +  + R + +   ++++    
Sbjct: 62  E----WIATEISRALIYAPNGKEFEVPGDGYVLERRVFDKWLVVRAVEAGAEVELLAHAR 117

Query: 125 AGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
                E   +  +    +D    +R   V+   G
Sbjct: 118 RALLDEG-RVVGVEYEGEDGVHEVRARIVIAADG 150


>gi|170079163|ref|YP_001735801.1| succinate dehydrogenase flavoprotein subunit [Synechococcus sp.
          PCC 7002]
 gi|169886832|gb|ACB00546.1| succinate dehydrogenase flavoprotein subunit [Synechococcus sp.
          PCC 7002]
          Length = 575

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 5  SYDVIVIGGGHAGCEAAA 22
           +DVI++GGG AGC AA 
Sbjct: 3  QHDVIIVGGGLAGCRAAL 20


>gi|166368647|ref|YP_001660920.1| beta-carotene ketolase [Microcystis aeruginosa NIES-843]
 gi|166091020|dbj|BAG05728.1| beta-carotene ketolase [Microcystis aeruginosa NIES-843]
          Length = 548

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN---PAIGGLGKGHL 58
           SYDVI+IG GH G   AA   K G    L+  ++   G+ +     P +    K +L
Sbjct: 2  ESYDVILIGAGHNGLVCAAYLLKAGYRVLLLEQRSVPGGAATTEAVIPDLAPDFKFNL 59


>gi|153010637|ref|YP_001371851.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
 gi|151562525|gb|ABS16022.1| FAD dependent oxidoreductase [Ochrobactrum anthropi ATCC 49188]
          Length = 433

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA 49
          DV ++GGG  G  AA   AK G    L+       G+   N  
Sbjct: 31 DVAIVGGGFTGLSAALHLAKRGKRVILLEGNAVGWGASGRNNG 73


>gi|149914859|ref|ZP_01903388.1| hypothetical protein RAZWK3B_15845 [Roseobacter sp. AzwK-3b]
 gi|149811047|gb|EDM70884.1| hypothetical protein RAZWK3B_15845 [Roseobacter sp. AzwK-3b]
          Length = 419

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          D++VIGGG  GC AA  AA  GA   L+   T   G    N  +   G
Sbjct: 28 DLLVIGGGFTGCTAALKAAGQGADVVLLEFDTIGHGGSGRNVGLVNAG 75


>gi|148656650|ref|YP_001276855.1| N-methyltryptophan oxidase [Roseiflexus sp. RS-1]
 gi|148568760|gb|ABQ90905.1| Sarcosine oxidase [Roseiflexus sp. RS-1]
          Length = 379

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +  +YDVI+IG G  G  AA  AA+ G     I   T
Sbjct: 1  MTPAYDVIIIGLGGMGSAAAYHAARRGRRVLGIERHT 37


>gi|116255585|ref|YP_771418.1| mercuric reductase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260233|emb|CAK03337.1| putative heavy metal resistance protein [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 453

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTS-----TIGSMSCNPAIGGLGK 55
          +S+D IVIG G AG     +AA++   G   ALI  K         G M     +     
Sbjct: 2  KSFDAIVIGAGQAG---PFLAARMVEKGMKVALIERKFLGGTCVNAGCMPTKTLVASARA 58

Query: 56 GHLVREIDALD 66
           H+ R   A  
Sbjct: 59 AHVARNSAAYG 69


>gi|74318781|ref|YP_316521.1| oxidoreductase, FAD-binding [Thiobacillus denitrificans ATCC
          25259]
 gi|74058276|gb|AAZ98716.1| oxidoreductase, FAD-binding, putative [Thiobacillus denitrificans
          ATCC 25259]
          Length = 445

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   DV+V+GGG AG  AAA+ A+ G    L+
Sbjct: 12 DHHCDVLVMGGGPAGSTAAALLAEKGHRVTLL 43


>gi|20095081|ref|NP_614928.1| dehydrogenase (flavoprotein) [Methanopyrus kandleri AV19]
 gi|19888363|gb|AAM02858.1| Predicted dehydrogenase (flavoprotein) [Methanopyrus kandleri AV19]
          Length = 418

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            +DV+V+G G AG  AA  AA+ G    ++  K        C   I   G  H   E   
Sbjct: 24  EFDVVVVGAGPAGSVAAWAAAEAGCDVLILERKAEIGVPKQCAEGISAHGLEHAGIEPQD 83

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                    + +       N K+            R   +  + R + +   ++++    
Sbjct: 84  E----WIATEISRALIYAPNGKEFEVPGDGYVLERRVFDKWLVVRAVEAGAEVELLAHAR 139

Query: 125 AGFNTEKNIISSI--VMQDN-SMIRCSTVVLTTG 155
                E   +  +    +D    +R   V+   G
Sbjct: 140 RALLDEG-RVVGVEYEGEDGVHEVRARIVIAADG 172


>gi|312142551|ref|YP_003993997.1| NADH:flavin oxidoreductase/NADH oxidase [Halanaerobium sp.
           'sapolanicus']
 gi|311903202|gb|ADQ13643.1| NADH:flavin oxidoreductase/NADH oxidase [Halanaerobium sp.
           'sapolanicus']
          Length = 643

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
            +  +++V+G G AG E +  AAKLG    ++      IG +    +I  
Sbjct: 378 QKRKNIVVVGAGPAGLEYSITAAKLGHKVTILEKN-DYIGGLVKIASIPN 426


>gi|300710937|ref|YP_003736751.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
 gi|299124620|gb|ADJ14959.1| thioredoxin reductase [Halalkalicoccus jeotgali B3]
          Length = 196

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV ++GGG AG  AA   AK G  T + 
Sbjct: 3  DVAIVGGGPAGLSAALFTAKNGLDTVVF 30


>gi|284167102|ref|YP_003405380.1| NADH:flavin oxidoreductase/NADH oxidase [Haloterrigena turkmenica
           DSM 5511]
 gi|284016757|gb|ADB62707.1| NADH:flavin oxidoreductase/NADH oxidase [Haloterrigena turkmenica
           DSM 5511]
          Length = 637

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN----PAIGGLGKGHLVREID 63
           V+V+GGG AG   AA+AA+ G    L        G +         +    +  LV  + 
Sbjct: 379 VLVVGGGPAGMRFAAIAARRGHDVTLREADAELGGQLQTAAQGPLNLLERAEEDLVAAVR 438

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELY 103
                + R +                A  G R   D   +
Sbjct: 439 EAGVTVERESRVTADALEPEWDAVVVATGGTRPGLDEYDF 478


>gi|260494623|ref|ZP_05814753.1| thioredoxin-disulfide reductase [Fusobacterium sp. 3_1_33]
 gi|260197785|gb|EEW95302.1| thioredoxin-disulfide reductase [Fusobacterium sp. 3_1_33]
          Length = 313

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          + + YDVI++G G AG  A   A +   ST ++      IGSM
Sbjct: 7  MEKIYDVIIVGAGPAGLTAGIYAGRGNLSTLILE--KEGIGSM 47


>gi|223986026|ref|ZP_03636055.1| hypothetical protein HOLDEFILI_03361 [Holdemania filiformis DSM
           12042]
 gi|223961976|gb|EEF66459.1| hypothetical protein HOLDEFILI_03361 [Holdemania filiformis DSM
           12042]
          Length = 569

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +V+V+GGG AG EAA VAA  G    + 
Sbjct: 415 NVMVVGGGPAGIEAARVAAIRGHHVTVY 442


>gi|254463805|ref|ZP_05077216.1| sarcosine oxidase, alpha subunit family [Rhodobacterales bacterium
           Y4I]
 gi|206684713|gb|EDZ45195.1| sarcosine oxidase, alpha subunit family [Rhodobacterales bacterium
           Y4I]
          Length = 981

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           DV+VIG G AG  AA  A + GA   L
Sbjct: 167 DVLVIGSGPAGLMAALTAGRAGADVIL 193


>gi|167758913|ref|ZP_02431040.1| hypothetical protein CLOSCI_01259 [Clostridium scindens ATCC
          35704]
 gi|167663320|gb|EDS07450.1| hypothetical protein CLOSCI_01259 [Clostridium scindens ATCC
          35704]
          Length = 468

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + +D+IVIG G  G  AA  AAK G   A++
Sbjct: 1  MEQRFDLIVIGAGPGGYVAAIKAAKAGLQVAVV 33


>gi|121609980|ref|YP_997787.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
 gi|121554620|gb|ABM58769.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2]
          Length = 394

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           S+D IVIG G  GC  A   A+LG+   L+
Sbjct: 2  ESFDAIVIGAGVIGCSVAYHLARLGSKKVLV 32


>gi|51859625|gb|AAU11095.1| dihydrolipoamide dehydrogenase [Loligo pealei]
          Length = 40

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA   A+LG  TA+I
Sbjct: 2  QYDVIVIGSGPGGYVAAIRCAQLGMKTAII 31


>gi|29345844|ref|NP_809347.1| hypothetical protein BT_0434 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337737|gb|AAO75541.1| Pyridine nucleotide-disulphide oxidoreductase-like protein
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 627

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV++IGGG +G  +   +A++GA+T ++   T  +G M  +  +     G+         
Sbjct: 30  DVLIIGGGASGVTSGIQSARMGANTLILEEST-WLGGMLTSAGVS-AVDGNYRLPAGLWG 87

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               R++D  G     L+  K           +  +    +   + ++ NL V +     
Sbjct: 88  EFKNRLSDYYGG----LDSLKT--GWVSNVLFEPSVGNKILHEMVAAENNLKVWKQACLE 141

Query: 127 FN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               T    ++ + ++   +      V+   T L  V  +  +K   G
Sbjct: 142 EVKRTGDEWVAKVKVEGQGVKTVRAKVMIDATELGDVAKMCGVKYDIG 189


>gi|78046203|ref|YP_362378.1| putative thioredoxin reductase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78034633|emb|CAJ22278.1| putative thioredoxin reductase [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 299

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++VI++GG +AG  AA   A+      L       + S            G L R+   
Sbjct: 2  QHEVIIVGGSYAGLSAALQLARARRRVLL-------VDSGRRCNRFAETSHGLLGRD--- 51

Query: 65 LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
                R+AD A  Q  VL+        G   Q 
Sbjct: 52 -GASPARIADEARAQ--VLSYSSVQWADGEVVQV 82


>gi|154246216|ref|YP_001417174.1| tricarballylate dehydrogenase [Xanthobacter autotrophicus Py2]
 gi|154160301|gb|ABS67517.1| precorrin 3B synthase CobZ [Xanthobacter autotrophicus Py2]
          Length = 465

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG+AG  AA  A + GAS  ++
Sbjct: 9  DVVVIGGGNAGLCAAISARRSGASVLVV 36


>gi|121998738|ref|YP_001003525.1| putative glutamate synthase (NADPH) small subunit [Halorhodospira
           halophila SL1]
 gi|121590143|gb|ABM62723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 647

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 16/38 (42%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           V VIGGG AG  AA    K G    L   +    G M 
Sbjct: 147 VAVIGGGPAGLSAAYQLRKRGHRCTLFEAQPELGGMMR 184


>gi|323343936|ref|ZP_08084163.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Prevotella oralis ATCC 33269]
 gi|323095755|gb|EFZ38329.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Prevotella oralis ATCC 33269]
          Length = 414

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +DVI+IGGG +G  A    +K G    +I+
Sbjct: 3  FDVIIIGGGLSGLTAGIALSKAGKKVVIIS 32


>gi|260892958|ref|YP_003239055.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865099|gb|ACX52205.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 744

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           ++VIGGG AG  AA  AAK      L+       G  + 
Sbjct: 139 ILVIGGGLAGITAALEAAKANYPVVLVEKNEELGGWAAR 177


>gi|237718017|ref|ZP_04548498.1| NAD-utilizing dehydrogenase [Bacteroides sp. 2_2_4]
 gi|229452658|gb|EEO58449.1| NAD-utilizing dehydrogenase [Bacteroides sp. 2_2_4]
          Length = 550

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 51/177 (28%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGA--------------STALITHKTSTIGSMSCNPAIGGL 53
           VIV+G G  G  AA    +LG                  L             N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLVELGLRPIVIERGKDVRERKKDLAQISREHTVDPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++LNV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKILNVFCQHGASTSILVDAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        Q  +     E + +  I            V+L TG   R V 
Sbjct: 199 NMRNTIIECGGEVHFQIRMDALIIENDEVKGIETNTRKTFLGP-VILATGHSARDVY 254


>gi|212715725|ref|ZP_03323853.1| hypothetical protein BIFCAT_00625 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661092|gb|EEB21667.1| hypothetical protein BIFCAT_00625 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 493

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKG 56
          M  + +D+++IG G  G   A  AA+LG + AL+     T+G       C P+   L   
Sbjct: 1  MTEQHFDIVIIGAGPGGYSTALRAAQLGKTVALVERD-DTLGGTCLNRGCIPSKALLTAA 59

Query: 57 HLVREID 63
          H V  + 
Sbjct: 60 HSVENVR 66


>gi|119511090|ref|ZP_01630209.1| Geranylgeranyl reductase [Nodularia spumigena CCY9414]
 gi|119464261|gb|EAW45179.1| Geranylgeranyl reductase [Nodularia spumigena CCY9414]
          Length = 406

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 5  VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVDEFD---- 54

Query: 68 LMGRVADAAGIQFRVLNVK 86
          L   + D    + ++++  
Sbjct: 55 LPPEIIDRRVRKMKMISPS 73


>gi|150395530|ref|YP_001325997.1| hypothetical protein Smed_0303 [Sinorhizobium medicae WSM419]
 gi|150027045|gb|ABR59162.1| HI0933 family protein [Sinorhizobium medicae WSM419]
          Length = 394

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +    DV++IG G AG   A  A K G    ++ H
Sbjct: 1  MAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVLDH 35


>gi|19569782|gb|AAL92175.1|AF489520_1 beta-lycopene cyclase [Sandersonia aurantiaca]
          Length = 495

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E +A+D
Sbjct: 80  DLAVVGGGPAGLAVAQQVSQSGLSVCSIDPSPKLIWP---------NNYGVWVDEFEAMD 130

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L    A   G    +    K    R       ++L    M + + +   +   Q +V  
Sbjct: 131 LLDCLDASWPGAVVYLDESTKKLLDRPYARVNRKQLKSKMMHKCVAN--GVRFHQAKVVK 188

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E+   S+I+  D   I+   V+  TG F R ++   K   P           L    
Sbjct: 189 VIHEEAK-SNIICNDGVTIQARVVLDATG-FSRCLVQYDK---PYNPGYQVAYGILAQV- 242

Query: 187 MKFDFDTGRL 196
            +  FD  ++
Sbjct: 243 EEHPFDLDKM 252


>gi|2765041|emb|CAA71086.1| 2-enoate reductase [Clostridium tyrobutyricum]
          Length = 667

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           +V+++GGG  GCE A   AK G   A++  K   I
Sbjct: 528 NVLIVGGGLVGCETALYLAKAGKKVAIVEAK-DKI 561


>gi|52144018|ref|YP_082810.1| oxidoreductase [Bacillus cereus E33L]
 gi|51977487|gb|AAU19037.1| oxidoreductase [Bacillus cereus E33L]
          Length = 397

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
          DV+V+G G AG   A   AK+G    LI     + GS + N  +
Sbjct: 29 DVLVVGSGEAGAHIAYSLAKIGMRVILIEKNMISCGSTAANTGL 72


>gi|77458542|ref|YP_348047.1| FAD dependent oxidoreductase [Pseudomonas fluorescens Pf0-1]
 gi|77382545|gb|ABA74058.1| putative FAD dependent oxidoreductase [Pseudomonas fluorescens
           Pf0-1]
          Length = 390

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   YD IV+GGG AG  AA   A  G+   L   +     +   + AI           
Sbjct: 1   MTARYDFIVVGGGIAGVSAAYELAAHGSVCLLEQEQQLAYHTTGRSAAIS---------- 50

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPA---VRGPR-----TQADRELYRLAMQREILS 113
           +++      R    A  +F   N  +G A   +  PR      QA R     A    +L+
Sbjct: 51  MESYGNQQIRSLTCASRRFFE-NPPEGLAEHPLWAPRGALIVAQAARVDKLAARFNAVLA 109

Query: 114 Q 114
           Q
Sbjct: 110 Q 110


>gi|23011974|ref|ZP_00052177.1| COG1053: Succinate dehydrogenase/fumarate reductase, flavoprotein
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 605

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 60/223 (26%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGLG--- 54
           + ++DV+++G G AG  A    ++ G  TA IT     ++ T+ +    + ++G +G   
Sbjct: 17  DHTFDVVIVGAGGAGLRATVGCSQAGLRTACITKVFPTRSHTVAAQGGISASLGNMGPDD 76

Query: 55  ---------KGH------------------LVREIDALD-----GLMGRVADAAGIQFRV 82
                    KG                    V E++           G++          
Sbjct: 77  WRWHMYDTVKGSDWLGDQDAIEYLVRNAPAAVYELEHWGVPFSRTEEGKIYQRPFGGM-T 135

Query: 83  LNVKKGPAVRGPRTQADR-------ELYRLAMQREILSQENLDVIQGEVAGFN-TEKNII 134
            +  KG A R     ADR        LY  A++ +         I+         E+   
Sbjct: 136 TDYGKGTAQRTCAA-ADRTGHAMLHTLYGQAVKNKTQ-----FFIEYFALDLIMDEEGRC 189

Query: 135 SSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
             ++       +    R    +L TG + R            G
Sbjct: 190 RGVIAIDQATGEIHRFRAQQTILATGGYGRAYFSATSAHTCTG 232


>gi|319899500|ref|YP_004159597.1| dihydrolipoamide dehydrogenase [Bartonella clarridgeiae 73]
 gi|319403468|emb|CBI77048.1| dihydrolipoamide dehydrogenase [Bartonella clarridgeiae 73]
          Length = 468

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDV+VIG G  G  AA  A +LG  TA+I  K +T+G    ++ C P+   L    L  
Sbjct: 2  SYDVVVIGAGPGGYVAAIKATQLGLKTAIIE-KRATLGGTCLNIGCIPSKALLHASELFA 60

Query: 61 E 61
          E
Sbjct: 61 E 61


>gi|297564858|ref|YP_003683830.1| thioredoxin reductase [Meiothermus silvanus DSM 9946]
 gi|296849307|gb|ADH62322.1| thioredoxin reductase [Meiothermus silvanus DSM 9946]
          Length = 326

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+++GGG AG  AA    +    T ++
Sbjct: 3  EYDVVIVGGGPAGLTAAIYTGRANLKTLIL 32


>gi|218258677|ref|ZP_03474998.1| hypothetical protein PRABACTJOHN_00653 [Parabacteroides johnsonii
          DSM 18315]
 gi|218225302|gb|EEC97952.1| hypothetical protein PRABACTJOHN_00653 [Parabacteroides johnsonii
          DSM 18315]
          Length = 447

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 18/33 (54%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV +IGGG AG  AA  AA  G ST L    
Sbjct: 2  KYDVAIIGGGPAGYTAAEKAAAGGLSTVLFEKN 34


>gi|163732599|ref|ZP_02140044.1| pyridine nucleotide-disulphide oxidoreductase, putative
           [Roseobacter litoralis Och 149]
 gi|161393959|gb|EDQ18283.1| pyridine nucleotide-disulphide oxidoreductase, putative
           [Roseobacter litoralis Och 149]
          Length = 402

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+++GGG+ G EAAAVA+KLG    L+   
Sbjct: 146 VLIVGGGYIGLEAAAVASKLGLRVTLVEMS 175


>gi|154490785|ref|ZP_02030726.1| hypothetical protein PARMER_00702 [Parabacteroides merdae ATCC
          43184]
 gi|154088850|gb|EDN87894.1| hypothetical protein PARMER_00702 [Parabacteroides merdae ATCC
          43184]
          Length = 464

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVI++GGG AGC AA  AA+ GA T LI
Sbjct: 44 VDDQWDVIIVGGGPAGCTAAIAAAREGAKTLLI 76


>gi|57234504|ref|YP_181469.1| mercuric reductase, putative [Dehalococcoides ethenogenes 195]
 gi|57224952|gb|AAW40009.1| mercuric reductase, putative [Dehalococcoides ethenogenes 195]
          Length = 489

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD++VIGGG AG  AA  A  LG   A++
Sbjct: 1  MKYQYDLVVIGGGLAGFTAAVFANGLGKKVAIV 33


>gi|13475865|ref|NP_107435.1| oxidoreductase [Mesorhizobium loti MAFF303099]
 gi|14026624|dbj|BAB53221.1| probable oxidoreductase [Mesorhizobium loti MAFF303099]
          Length = 446

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD  +IGGG  G  AA   AK GA  A++  +    G+   N   GG     L     +
Sbjct: 47  HYDAAIIGGGFTGLAAARQLAKAGAKVAVLEAQRVGWGASGRN---GGHLNNGLAHSYLS 103

Query: 65  LDGLMGRVADAAGIQFRVLNVK 86
               +G+  D A   +R L+  
Sbjct: 104 AKSELGK--DRAIALYRALDSS 123


>gi|326385056|ref|ZP_08206727.1| 3-ketosteroid-delta-1-dehydrogenase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196199|gb|EGD53402.1| 3-ketosteroid-delta-1-dehydrogenase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 520

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-----------SMSCNPAIG 51
            + YDVIV G G  G      AA+ G S  ++       G              CNP + 
Sbjct: 11  TQEYDVIVAGSGAGGVTGTYTAAREGLSVLMVEAS-DKFGGTTAYSGGGGMWFPCNPVLL 69

Query: 52  GLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADREL 102
             G    +   DAL      V D   ++ +   V +G A      + D+ L
Sbjct: 70  RAGAEDSIE--DALTYYRAVVGDRTPVELQETYV-RGGAPLIEYLEQDKHL 117


>gi|323464397|gb|ADX76550.1| dihydrolipoyl dehydrogenase, putative [Staphylococcus
          pseudintermedius ED99]
          Length = 472

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD++++GGG AG  AA  A++LG S A++
Sbjct: 1  MTKEKYDIVILGGGIAGYSAAIRASQLGKSVAIV 34


>gi|319892501|ref|YP_004149376.1| Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid
          dehydrogenase [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162197|gb|ADV05740.1| Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid
          dehydrogenase [Staphylococcus pseudintermedius
          HKU10-03]
          Length = 472

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD++++GGG AG  AA  A++LG S A++
Sbjct: 1  MTKEKYDIVILGGGIAGYSAAIRASQLGKSVAIV 34


>gi|294501774|ref|YP_003565474.1| thioredoxin-disulfide reductase [Bacillus megaterium QM B1551]
 gi|294351711|gb|ADE72040.1| thioredoxin-disulfide reductase [Bacillus megaterium QM B1551]
          Length = 317

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRADLSTLMI 35


>gi|284162651|ref|YP_003401274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|294862439|sp|P84626|HDLA_ARCPA RecName: Full=Heterodisulfide reductase subunit A-like protein
 gi|284012648|gb|ADB58601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 701

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+VIGGG AG  AA   A  G    L+            NP+IGG 
Sbjct: 148 VLVIGGGIAGIFAALDIANAGYKVYLVE----------RNPSIGGN 183


>gi|300769979|ref|ZP_07079858.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33861]
 gi|300762455|gb|EFK59272.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33861]
          Length = 462

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD+IVIG G  G  AA  AA+LG  TA++
Sbjct: 2  NYDIIVIGSGPGGYVAAIRAAQLGFKTAIV 31


>gi|228473164|ref|ZP_04057921.1| All-trans-retinol 13,14-reductase [Capnocytophaga gingivalis ATCC
          33624]
 gi|228275746|gb|EEK14523.1| All-trans-retinol 13,14-reductase [Capnocytophaga gingivalis ATCC
          33624]
          Length = 500

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +   YD I+IG G  G   A + AK G   A++   
Sbjct: 1  MRSKYDTIIIGSGLGGLMTALILAKEGKKVAVLEQN 36


>gi|227505626|ref|ZP_03935675.1| dihydrolipoamide dehydrogenase [Corynebacterium striatum ATCC
          6940]
 gi|227197779|gb|EEI77827.1| dihydrolipoamide dehydrogenase [Corynebacterium striatum ATCC
          6940]
          Length = 470

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N  YDV+V+G G  G  +A  AA+LG   A+I
Sbjct: 1  MTNEHYDVVVLGAGPGGYVSAIRAAQLGKKVAVI 34


>gi|284991327|ref|YP_003409881.1| sarcosine oxidase subunit beta family protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284064572|gb|ADB75510.1| sarcosine oxidase, beta subunit family [Geodermatophilus obscurus
           DSM 43160]
          Length = 419

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  Y          +  +D+IQ  EV GF T+ N ++ +       I   
Sbjct: 176 ATYQPRAGIAKHDYVAWGFARRADEAGIDLIQDCEVTGFATDGNRVTGVQTTRG-TIGAG 234

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
           TV L        +  +  +++    +   P  +L +  ++
Sbjct: 235 TVALCAAGHTSVLTDMLGIRV---PIQSHPLQALVSELLE 271


>gi|171316037|ref|ZP_02905264.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          MEX-5]
 gi|171098841|gb|EDT43633.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          MEX-5]
          Length = 532

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGK 55
          M +R++D IVIG G AGC  A    + G  T L+     H       M      GGL K
Sbjct: 1  MSDRTFDYIVIGAGSAGCTIATHLVERGLGTVLLLEAGGHDKDLFIHMP-----GGLAK 54


>gi|170696879|ref|ZP_02887975.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          IOP40-10]
 gi|170138053|gb|EDT06285.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          IOP40-10]
          Length = 532

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGK 55
          M +R++D IVIG G AGC  A    + G  T L+     H       M      GGL K
Sbjct: 1  MSDRTFDYIVIGAGSAGCTIATHLVERGLGTVLLLEAGGHDKDLFIHMP-----GGLAK 54


>gi|154149635|ref|YP_001403253.1| succinate dehydrogenase flavoprotein subunit [Candidatus
          Methanoregula boonei 6A8]
 gi|153998187|gb|ABS54610.1| Succinate dehydrogenase [Methanoregula boonei 6A8]
          Length = 542

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          V+VIG G AG  AA  AA+ G  T L++   +  G   C P +   G   ++RE D+ 
Sbjct: 11 VLVIGSGGAGVRAAIGAARYGT-TLLLSKTLAGKG--GCTP-MAEGGYNAVLREADSC 64


>gi|126660735|ref|ZP_01731833.1| Alanine dehydrogenase and pyridine nucleotide transhydrogenase
           [Cyanothece sp. CCY0110]
 gi|126617976|gb|EAZ88747.1| Alanine dehydrogenase and pyridine nucleotide transhydrogenase
           [Cyanothece sp. CCY0110]
          Length = 362

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+++GGG  G EAA +A  +GA   +       +  +
Sbjct: 170 VVILGGGIVGTEAAKIAVGMGAKVQIFDINVERLAYL 206


>gi|123968111|ref|YP_001008969.1| NAD binding site [Prochlorococcus marinus str. AS9601]
 gi|123198221|gb|ABM69862.1| NAD binding site protein [Prochlorococcus marinus str. AS9601]
          Length = 377

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           +DV++IGGG +G   A   +K G S  +         S    P  GG+   
Sbjct: 3  EFDVVIIGGGLSGSSTALNLSKKGYSVLI----IEKEKSQDYKPCAGGMASS 50


>gi|172062177|ref|YP_001809828.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          MC40-6]
 gi|171994694|gb|ACB65612.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          MC40-6]
          Length = 532

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGK 55
          M +R++D IVIG G AGC  A    + G  T L+     H       M      GGL K
Sbjct: 1  MSDRTFDYIVIGAGSAGCTIATHLVERGLGTVLLLEAGGHDKDLFIHMP-----GGLAK 54


>gi|38174847|emb|CAD89770.1| hypothetical protein [Melittangium lichenicola]
          Length = 452

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+VIG G +G  AA   A+ G    ++
Sbjct: 5  VVVIGAGPSGLSAAHALARAGQRVVVL 31


>gi|115359742|ref|YP_776880.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          AMMD]
 gi|115285030|gb|ABI90546.1| glucose-methanol-choline oxidoreductase [Burkholderia ambifaria
          AMMD]
          Length = 532

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAIGGLGK 55
          M +R++D IVIG G AGC  A    + G  T L+     H       M      GGL K
Sbjct: 1  MSDRTFDYIVIGAGSAGCTIATHLVERGLGTVLLLEAGGHDKDLFIHMP-----GGLAK 54


>gi|325928085|ref|ZP_08189298.1| hypothetical protein TIGR00275 [Xanthomonas perforans 91-118]
 gi|325541583|gb|EGD13112.1| hypothetical protein TIGR00275 [Xanthomonas perforans 91-118]
          Length = 393

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+VIG G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSMRCDVLVIGAGAAGLMSAFTAGQRGRKVVV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   D+ 
Sbjct: 57  GTTPGNFISANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDIS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNS 143
             ++     ++   + + ++   
Sbjct: 108 SKQIVRMLLDECDAAGVQIRTQC 130


>gi|299536200|ref|ZP_07049513.1| thioredoxin reductase [Lysinibacillus fusiformis ZC1]
 gi|298728186|gb|EFI68748.1| thioredoxin reductase [Lysinibacillus fusiformis ZC1]
          Length = 314

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLSTLMI 35


>gi|296875757|ref|ZP_06899821.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
          parasanguinis ATCC 15912]
 gi|296433253|gb|EFH19036.1| pyridine nucleotide-disulfide oxidoreductase [Streptococcus
          parasanguinis ATCC 15912]
          Length = 390

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +  IVIGGG AG  AA  +   G  T LI   
Sbjct: 3  HFHTIVIGGGPAGMMAAIASVSYGQPTLLIEKN 35


>gi|295707124|ref|YP_003600199.1| thioredoxin-disulfide reductase [Bacillus megaterium DSM 319]
 gi|294804783|gb|ADF41849.1| thioredoxin-disulfide reductase [Bacillus megaterium DSM 319]
          Length = 317

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+IG G AG  AA   ++   ST +I
Sbjct: 4  EKIYDVIIIGAGPAGMTAAVYTSRADLSTLMI 35


>gi|227538429|ref|ZP_03968478.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33300]
 gi|227241711|gb|EEI91726.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33300]
          Length = 462

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD+IVIG G  G  AA  AA+LG  TA++
Sbjct: 2  NYDIIVIGSGPGGYVAAIRAAQLGFKTAIV 31


>gi|255561162|ref|XP_002521593.1| phytoene dehydrogenase, putative [Ricinus communis]
 gi|223539271|gb|EEF40864.1| phytoene dehydrogenase, putative [Ricinus communis]
          Length = 562

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ + +D ++IG GH G  AAA  A+ G S A++
Sbjct: 15 LLGKKWDALIIGAGHNGLTAAAYLARGGLSVAVL 48


>gi|192361512|ref|YP_001982866.1| D-amino acid oxidase family protein [Cellvibrio japonicus Ueda107]
 gi|190687677|gb|ACE85355.1| D-amino acid oxidase family protein [Cellvibrio japonicus Ueda107]
          Length = 700

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA------IGGLGKGHLVREI 62
           +VIGGG AGC +A   A+ G    L+          S NP       +    +   V  +
Sbjct: 303 LVIGGGLAGCTSARALAERGWQVTLLERHEHLAEEASGNPQGVLYARLSRKAEPQAVFNL 362

Query: 63  DALD-----------------GLMGRVADAAGIQFRVLNVKK 87
           + LD                 G++   ADA   Q + L   K
Sbjct: 363 NCLDFAQRFYQPYWTMAGSRCGVLQLAADADEQQLQTLLRDK 404


>gi|319779533|ref|YP_004130446.1| Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
           [Taylorella equigenitalis MCE9]
 gi|317109557|gb|ADU92303.1| Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex
           [Taylorella equigenitalis MCE9]
          Length = 595

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
            YD+IV+G G  G  AA  AA LG  TA+I            NP +GG+
Sbjct: 128 DYDLIVLGAGPGGYSAAFRAADLGLKTAIIE----------RNPTLGGV 166


>gi|251736855|gb|ACT10280.1| 3-ketosteroid-1-dehydrogenase [Mycobacterium neoaurum]
          Length = 566

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DV+V+G G AG  AA  AA  G ST ++
Sbjct: 12 FDVVVVGSGAAGMVAALTAAHQGLSTVVV 40


>gi|268317524|ref|YP_003291243.1| dihydrolipoamide dehydrogenase [Rhodothermus marinus DSM 4252]
 gi|262335058|gb|ACY48855.1| dihydrolipoamide dehydrogenase [Rhodothermus marinus DSM 4252]
          Length = 474

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          N  YDV+VIG G  G E A  A++LG  TA+I   
Sbjct: 4  NARYDVVVIGSGPGGYETAIRASQLGFKTAIIEKN 38


>gi|226357427|ref|YP_002787166.1| mercuric reductase [Deinococcus deserti VCD115]
 gi|226319417|gb|ACO47412.1| putative dihydrolipoyl dehydrogenase [Deinococcus deserti VCD115]
          Length = 477

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSCNPA---IGGLGKGHLVRE 61
          DVIVIG G AG   A   A+ G   +LI   H   T  +  C P    I      HL R+
Sbjct: 14 DVIVIGAGQAGGPLAGALARSGRCVSLIERLHVGGTCVNEGCTPTKTIIASARVAHLARQ 73

Query: 62 IDALD 66
           +   
Sbjct: 74 AEQYG 78


>gi|225874414|ref|YP_002755873.1| dihydrolipoyl dehydrogenase [Acidobacterium capsulatum ATCC
          51196]
 gi|225792890|gb|ACO32980.1| dihydrolipoyl dehydrogenase [Acidobacterium capsulatum ATCC
          51196]
          Length = 474

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDV +IGGG AG  AA  A +LG   ALI
Sbjct: 1  MAETIYDVAIIGGGPAGYTAAIRAGQLGLKAALI 34


>gi|224825937|ref|ZP_03699041.1| precorrin 3B synthase CobZ [Lutiella nitroferrum 2002]
 gi|224602161|gb|EEG08340.1| precorrin 3B synthase CobZ [Lutiella nitroferrum 2002]
          Length = 467

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 74/248 (29%), Gaps = 49/248 (19%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCNPA----- 49
           +DV+VIGGG+A   AA +A + GAS  L+           +  T  +  M   P      
Sbjct: 2   FDVVVIGGGNAALCAALMARETGASVLLLEAAPRAWRGGNSQHTRNLRCMHDAPQDVLVE 61

Query: 50  --------------IGGLGKGHLVREIDALDGLMGRVADAAGIQFRV-----LNVKKGPA 90
                          GGL    L R +              G+ F+      L+  +  A
Sbjct: 62  AYPEEEYWQDLLRVTGGLTDEALARLVIQASSHCRDWMRRHGVHFQPSLSGALHTARTNA 121

Query: 91  VRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCST 149
                 +A    Y  + +R       + +     V     E     ++ + +   I    
Sbjct: 122 FFMGGGKALVNAYYRSAERL-----GVQIRYDAAVDALELEDGRFVAVRLGE-ERIPARA 175

Query: 150 VVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF-------NSFMKFDFDTGRLKTGTPA 202
            VL  G F      + +             N L         + +KF  D G    G P+
Sbjct: 176 CVLAAGGFESNREWLREAWGQNDNGEWPADNFLIRGTRFNQGTLLKFMIDAGADTVGEPS 235

Query: 203 RLDGKTII 210
           +     I 
Sbjct: 236 QSHCVAID 243


>gi|254513043|ref|ZP_05125109.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
 gi|221533042|gb|EEE36037.1| dihydrolipoyl dehydrogenase [Rhodobacteraceae bacterium KLH11]
          Length = 471

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IVIGGG  G  AA  AA+LG   A +
Sbjct: 15 YDLIVIGGGPGGYVAAIRAAQLGMKVACV 43


>gi|169628418|ref|YP_001702067.1| NADPH dependent 2,4-dienoyl-CoA reductase FadH [Mycobacterium
           abscessus ATCC 19977]
 gi|169240385|emb|CAM61413.1| Probable NADPH dependent 2,4-dienoyl-CoA reductase FadH
           [Mycobacterium abscessus]
          Length = 687

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           + V+G G AG  AA  AA+ G    L      
Sbjct: 390 IAVVGAGPAGLSAAVTAAQRGHKVVLFEANAE 421


>gi|170087524|ref|XP_001874985.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650185|gb|EDR14426.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 468

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAK 26
            + YDVI++GGG AGC  A    +
Sbjct: 80  QQVYDVIIVGGGPAGCATALALHR 103


>gi|134101027|ref|YP_001106688.1| sarcosine oxidase beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009415|ref|ZP_06567388.1| sarcosine oxidase beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913650|emb|CAM03763.1| sarcosine oxidase beta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 410

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  Y        L +  +D++Q  EV GF    + I  +       IR  
Sbjct: 167 ATWQPRAGIAKHDYVAWGFARALDRMGVDLVQNCEVTGFERVGDRIVGVETTRGD-IRAG 225

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
            V L        +     L++    +   P  +L +  ++
Sbjct: 226 KVALAAAGHTSVLADSLGLRL---PIQSHPLQALVSELLE 262


>gi|328874509|gb|EGG22874.1| amine oxidase [Dictyostelium fasciculatum]
          Length = 461

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVIVIGGG +G + AA     G +  LI
Sbjct: 1  MATQYDVIVIGGGLSGAQCAADLKSKGVNVLLI 33


>gi|326386346|ref|ZP_08207969.1| hypothetical protein Y88_2238 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209007|gb|EGD59801.1| hypothetical protein Y88_2238 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 652

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 5   SYDVIVIGGGHAGCEAAA--VAAKLGASTALITHKTSTIGSMSCNPAIGG--------LG 54
           SYD+IV+GGG +G  AA        G+   LI       G  +     G          G
Sbjct: 101 SYDLIVVGGGISGLAAAWFYQQRHGGSKRVLILDNHDDFGGHAKRNEFGEGASMRLSNAG 160

Query: 55  KGHLVREIDALDGLMG 70
             ++  E     G   
Sbjct: 161 SFNIFAEDGETGGAHA 176


>gi|325968110|ref|YP_004244302.1| phytoene dehydrogenase related protein [Vulcanisaeta moutnovskia
          768-28]
 gi|323707313|gb|ADY00800.1| Phytoene dehydrogenase related protein [Vulcanisaeta moutnovskia
          768-28]
          Length = 433

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVIVIG GH G  A+ V AK G    +I H
Sbjct: 3  DVIVIGAGHNGLIASIVLAKAGLDVLVIDH 32


>gi|297184305|gb|ADI20422.1| uncharacterized nad(fad)-dependent dehydrogenases [uncultured alpha
           proteobacterium EB080_L43F08]
          Length = 399

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           +IN+   V++IGGG+ G EAAAVA+KLG    L+  
Sbjct: 141 IINKH--VLIIGGGYIGLEAAAVASKLGLRVTLVEM 174


>gi|307307387|ref|ZP_07587123.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
 gi|306901901|gb|EFN32501.1| FAD dependent oxidoreductase [Sinorhizobium meliloti BL225C]
          Length = 425

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +DV VIGGG  G  AA   AK G+   ++  +    G+   N      G  H 
Sbjct: 25 HFDVAVIGGGFTGLAAARQLAKAGSKVVVLEAEKVGWGASGRNGGHLNNGLAHS 78


>gi|296532168|ref|ZP_06894927.1| possible thioredoxin-disulfide reductase [Roseomonas cervicalis
          ATCC 49957]
 gi|296267506|gb|EFH13372.1| possible thioredoxin-disulfide reductase [Roseomonas cervicalis
          ATCC 49957]
          Length = 305

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV V+GGG AG  AA +  +      L+
Sbjct: 3  DYDVAVVGGGPAGLSAALLLGRARRRVLLL 32


>gi|307726475|ref|YP_003909688.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia sp. CCGE1003]
 gi|307587000|gb|ADN60397.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia sp. CCGE1003]
          Length = 689

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G AG EAA V A  G    L+
Sbjct: 392 VLVVGAGPAGLEAARVCASRGHRVTLL 418


>gi|288917587|ref|ZP_06411951.1| monooxygenase FAD-binding [Frankia sp. EUN1f]
 gi|288350980|gb|EFC85193.1| monooxygenase FAD-binding [Frankia sp. EUN1f]
          Length = 412

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          ++ +++V V+GGG AG     + A+ G  T ++     
Sbjct: 6  VSHTFEVCVVGGGPAGIMLGLLLARHGLRTCVLEKHED 43


>gi|326200916|ref|ZP_08190788.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Clostridium papyrosolvens DSM 2782]
 gi|325988484|gb|EGD49308.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Clostridium papyrosolvens DSM 2782]
          Length = 426

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  D+I++G G AG  AA  A+++G S  ++
Sbjct: 1  MKKISDLIIVGAGPAGLMAAKTASEMGLSVIIV 33


>gi|255321457|ref|ZP_05362617.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
 gi|255301610|gb|EET80867.1| flavocytochrome c flavin subunit [Campylobacter showae RM3277]
          Length = 513

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  +DV++IG G AG  A   A++ G    +       +G +  N  + G
Sbjct: 40 FDEEWDVVIIGSGFAGLAAGIKASERGNKVLI----LEKMGRVGGNSVVNG 86


>gi|254720439|ref|ZP_05182250.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Brucella sp. 83/13]
          Length = 452

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 25/171 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG--GLGKGHLVRE 61
           D+++ GGG AG  AA      G  T L+   T KT    +    PAI            E
Sbjct: 50  DIVISGGGPAGMMAALALGARGYHTVLLGPETDKTDRRTTALIMPAIRFLEQIGVWAAIE 109

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A      R+ DA         + + PAV    ++ D   +   +   +L+ +   + +
Sbjct: 110 PEAAPLQSMRIVDATR------RLIRSPAVMFRASEIDEIAFGYNIPNAVLNAK---LAE 160

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              A  N  +  +            ++ ++    +    +V   G      
Sbjct: 161 AVAASRNIRRITVPAIEYRPNGDHVTVTLKGGDTLHTRLLVAADGRNSGAR 211


>gi|221197281|ref|ZP_03570328.1| BFD domain protein [Burkholderia multivorans CGD2M]
 gi|221203954|ref|ZP_03576972.1| BFD domain protein [Burkholderia multivorans CGD2]
 gi|221176120|gb|EEE08549.1| BFD domain protein [Burkholderia multivorans CGD2]
 gi|221183835|gb|EEE16235.1| BFD domain protein [Burkholderia multivorans CGD2M]
          Length = 478

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 7/150 (4%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +++G G AG  AA      G    +I       G +   P       G  VR   AL G 
Sbjct: 8   VIVGAGPAGVRAAEALVDAGLRPVVIDENARWGGQIYRQP----PADGAFVRGKRALYGF 63

Query: 69  MGRVADAAGIQFRVLNVKKG--PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
               ADA       L       P        A R       +   +   +L V  G    
Sbjct: 64  DAAKADAVHRTMAALLPHVDYRPNTLAWACGAGRVDTLQDGRETTVPYSHLIVASGATDR 123

Query: 127 -FNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   ++ +     + +         G
Sbjct: 124 MLPVPGWTLAGVYTLGGAQVALKAQGCAIG 153


>gi|168207548|ref|ZP_02633553.1| NADH oxidase [Clostridium perfringens E str. JGS1987]
 gi|170661114|gb|EDT13797.1| NADH oxidase [Clostridium perfringens E str. JGS1987]
          Length = 640

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           VIV+GGG AG EAA VA+  G    L    TS  G +
Sbjct: 381 VIVVGGGPAGLEAARVASLKGHDVTLFEESTSLGGQL 417


>gi|169344549|ref|ZP_02865517.1| NADH oxidase [Clostridium perfringens C str. JGS1495]
 gi|169297310|gb|EDS79420.1| NADH oxidase [Clostridium perfringens C str. JGS1495]
          Length = 640

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           VIV+GGG AG EAA VA+  G    L    TS  G +
Sbjct: 381 VIVVGGGPAGLEAARVASLKGHDVTLFEESTSLGGQL 417


>gi|163856184|ref|YP_001630482.1| hypothetical protein Bpet1874 [Bordetella petrii DSM 12804]
 gi|163259912|emb|CAP42213.1| conserved hypothetical protein [Bordetella petrii]
          Length = 422

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V +IGGG AG  AA   A+ G    +       + S+     + G G  +L   
Sbjct: 15 VAIIGGGPAGLMAAEALARQGIPADVY----DGMPSVGRKFLLAGRGGLNLTHS 64


>gi|114769627|ref|ZP_01447237.1| pyridine nucleotide-disulphide oxidoreductase family protein [alpha
           proteobacterium HTCC2255]
 gi|114549332|gb|EAU52214.1| pyridine nucleotide-disulphide oxidoreductase family protein [alpha
           proteobacterium HTCC2255]
          Length = 399

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           +IN+   V++IGGG+ G EAAAVA+KLG    L+  
Sbjct: 141 IINKH--VLIIGGGYIGLEAAAVASKLGLRVTLVEM 174


>gi|15807360|ref|NP_296091.1| pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
          component [Deinococcus radiodurans R1]
 gi|6460184|gb|AAF11916.1|AE002067_8 pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
          component, putative [Deinococcus radiodurans R1]
          Length = 467

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          N  YDV+VIG G  G  AA  A++LG  TA +
Sbjct: 4  NFDYDVLVIGAGPGGYHAAIRASQLGLKTACV 35


>gi|116749158|ref|YP_845845.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698222|gb|ABK17410.1| glutamate synthase (NADPH) GltB3 subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 777

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 47/220 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++G G+ GC+AA  A +LGA    +         +    + G   K            
Sbjct: 529 VVIVGAGNVGCDAATEAFRLGAEEVTLV-------DIQEPLSFGKERK------------ 569

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
                A+ AG  FR     K     G    +   +    +   +    +LD +   VA  
Sbjct: 570 ----AAEEAGASFRWPCFSKAVTEEGLELTSGEVIPADTVIISVGDMPDLDFLPETVA-- 623

Query: 128 NTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFM 187
             E       V  D S       V   G  ++  + +    I AGR     + ++ +   
Sbjct: 624 -VE----RGFVKVDESYQTTDPQVFAIGDAVK--LGLLTDAIGAGR---KAAQAISDILE 673

Query: 188 KFDFDTGRLKTGTPARLDGK-TIIWDKTEKQFADERLIPF 226
                      G   R D +  I +++   ++ D R++ F
Sbjct: 674 -----------GKRPRGDARKMIDYNRIRLEYFDPRMLKF 702


>gi|328874675|gb|EGG23040.1| amine oxidase [Dictyostelium fasciculatum]
          Length = 458

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIGGG +G + AA     G +  LI
Sbjct: 1  MSSIYDVIVIGGGLSGSQCAADLKANGVNVLLI 33


>gi|323691996|ref|ZP_08106244.1| hypothetical protein HMPREF9475_01107 [Clostridium symbiosum
          WAL-14673]
 gi|323503919|gb|EGB19733.1| hypothetical protein HMPREF9475_01107 [Clostridium symbiosum
          WAL-14673]
          Length = 436

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          V +IG G +G  AA  AA+ GA   L+ H    +G         G GK +L
Sbjct: 32 VTIIGAGASGMTAAIFAARQGAQVTLLEH-MDRVG---KKILSTGNGKCNL 78


>gi|299139575|ref|ZP_07032749.1| FAD dependent oxidoreductase [Acidobacterium sp. MP5ACTX8]
 gi|298598503|gb|EFI54667.1| FAD dependent oxidoreductase [Acidobacterium sp. MP5ACTX8]
          Length = 376

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           +V+++GGG AGC A+   A+ G    LI  +  T     C   + G     L      + 
Sbjct: 4   EVLIVGGGVAGCAASIALARKGRGVTLIEREP-TSRHKVCGEFLSGEALEDLHALGIDVA 62

Query: 67  GLMGRVADAAGIQFRVLNVKK---GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L     D   +       +     PA    R   D  L   A+   +  +     +   
Sbjct: 63  SLGAVPIDYVRLAAARRAAEAPLPFPAASLTRKALDTALIAEAVAAGVRVE-----LGRS 117

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF-LRG 160
           V   N     +    + D +     TV L+TG   LRG
Sbjct: 118 VQALNRTTANVWQATLDDGTTREAQTVFLSTGKHDLRG 155


>gi|296472691|gb|DAA14806.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Bos taurus]
          Length = 581

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +V+G GH G  AAA   + G +TA+ 
Sbjct: 34 EYDAVVVGAGHNGLVAAAYLQRFGVNTAVF 63


>gi|294828205|ref|NP_713067.2| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Lai str. 56601]
 gi|293386055|gb|AAN50085.2| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Lai str. 56601]
          Length = 472

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGH 57
          +  SYD+ VIG G  G  AA  AA+LG +  +I       G +     C P    L   H
Sbjct: 1  MPESYDLTVIGAGPGGYVAAIRAAQLGMNVCIIE--KDKPGGICLNWGCIPTKALLESAH 58

Query: 58 LVREIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
          L+ ++ +       ++D       ++   +  A
Sbjct: 59 LLEKLHSAKEYGINLSDPKPDFAAIIRRSRNVA 91


>gi|288918698|ref|ZP_06413045.1| NADH:flavin oxidoreductase/NADH oxidase [Frankia sp. EUN1f]
 gi|288349900|gb|EFC84130.1| NADH:flavin oxidoreductase/NADH oxidase [Frankia sp. EUN1f]
          Length = 678

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V V+G G AG  AA  AA+LG    + 
Sbjct: 390 VAVVGAGPAGLRAALTAAELGWEVTVF 416


>gi|254558667|ref|YP_003065762.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Methylobacterium extorquens DM4]
 gi|254265945|emb|CAX21694.1| Putative FAD-dependent pyridine nucleotide-disulphide
          oxidoreductase [Methylobacterium extorquens DM4]
          Length = 300

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DVI++GGG AG  AA +  +      L 
Sbjct: 2  HDVIIVGGGPAGLNAALILGRARRKVLLC 30


>gi|262198887|ref|YP_003270096.1| glutathione-disulfide reductase [Haliangium ochraceum DSM 14365]
 gi|262082234|gb|ACY18203.1| glutathione-disulfide reductase [Haliangium ochraceum DSM 14365]
          Length = 451

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YD+ VIGGG  G  AA +AA+ GA  A+
Sbjct: 1  MSTYDYDLFVIGGGSGGVRAARIAAQHGARVAI 33


>gi|225025426|ref|ZP_03714618.1| hypothetical protein EIKCOROL_02324 [Eikenella corrodens ATCC
           23834]
 gi|224941710|gb|EEG22919.1| hypothetical protein EIKCOROL_02324 [Eikenella corrodens ATCC
           23834]
          Length = 465

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M + + DV+VIGGG AG   A   A+      L T     I S         +G      
Sbjct: 1   MKHLTADVVVIGGGTAGM-GAFRNAR------LHTENVYLIESHVFGTTCARVGCMPSKL 53

Query: 61  EIDALDG-LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            I A +        D  G+     ++         R +++R+ +   +  ++ +      
Sbjct: 54  LIAAAEARHHALHTDPFGVHLDKSSISVNGEEVMNRVKSERDRFVGFVLEDVEAWPAERR 113

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           I G+   F  E      + + D++ IR   +V+ TG+
Sbjct: 114 IMGQA-KFIDEHT----VQIDDHTQIRAERIVIATGS 145


>gi|126649381|ref|ZP_01721622.1| thioredoxin reductase [Bacillus sp. B14905]
 gi|126593706|gb|EAZ87629.1| thioredoxin reductase [Bacillus sp. B14905]
          Length = 314

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDV++IG G AG  AA   ++   +T +I
Sbjct: 4  EKIYDVVIIGAGPAGMTAAVYTSRANLATLMI 35


>gi|124263126|ref|YP_001023596.1| putative ferredoxin reductase [Methylibium petroleiphilum PM1]
 gi|124262372|gb|ABM97361.1| putative ferredoxin reductase [Methylibium petroleiphilum PM1]
          Length = 425

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-LGKGHLV 59
           +     D++VIGGG  G E AAVAAK G    ++  +   + S    P I G +   H  
Sbjct: 149 LFREPGDMVVIGGGFIGMEVAAVAAKAGQRVTVVEAE-DRVMSRVVAPEISGYVASEHAA 207

Query: 60  REIDALDGLMG 70
             +  + G   
Sbjct: 208 HGVSIMTGRCA 218


>gi|77736011|ref|NP_001029704.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
          protein 2 [Bos taurus]
 gi|109820907|sp|Q3MHH6|PYRD2_BOVIN RecName: Full=Pyridine nucleotide-disulfide oxidoreductase
          domain-containing protein 2
 gi|75773677|gb|AAI05236.1| Chromosome 10 open reading frame 33 ortholog [Bos taurus]
          Length = 581

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD +V+G GH G  AAA   + G +TA+ 
Sbjct: 34 EYDAVVVGAGHNGLVAAAYLQRFGVNTAVF 63


>gi|16263471|ref|NP_436264.1| putative oxidoreductase [Sinorhizobium meliloti 1021]
 gi|14524166|gb|AAK65676.1| oxidoreductase [Sinorhizobium meliloti 1021]
          Length = 425

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +DV VIGGG  G  AA   AK G+   ++  +    G+   N      G  H 
Sbjct: 25 HFDVAVIGGGFTGLAAARQLAKAGSKVVVLEAEKVGWGASGRNGGHLNNGLAHS 78


>gi|332285546|ref|YP_004417457.1| hypothetical protein PT7_2293 [Pusillimonas sp. T7-7]
 gi|330429499|gb|AEC20833.1| hypothetical protein PT7_2293 [Pusillimonas sp. T7-7]
          Length = 450

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++  DV VIGGG+AG   A   A  GA   + 
Sbjct: 36 VDKHIDVAVIGGGYAGTCCALTLANAGARPVVF 68


>gi|307321462|ref|ZP_07600859.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
 gi|306892921|gb|EFN23710.1| FAD dependent oxidoreductase [Sinorhizobium meliloti AK83]
          Length = 425

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
           +DV VIGGG  G  AA   AK G+   ++  +    G+   N      G  H 
Sbjct: 25 HFDVAVIGGGFTGLAAARQLAKAGSKVVVLEAEKVGWGASGRNGGHLNNGLAHS 78


>gi|294155661|ref|YP_003560045.1| dihydrolipoyl dehydrogenase [Mycoplasma crocodyli MP145]
 gi|291600033|gb|ADE19529.1| dihydrolipoyl dehydrogenase [Mycoplasma crocodyli MP145]
          Length = 617

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           I   +DVIV+G G  G  AA  A K G  T ++               IG +    L++ 
Sbjct: 147 IKEEFDVIVVGSGPGGYLAAEEAGKSGLKTLIV----EKWAWGGVCLNIGCIPTKALLKS 202

Query: 62  IDALDGLMGRVADAAGIQFRVLNVK-KGPAVR--GPRTQADRELYRLAMQREILSQENLD 118
            +A+  L    AD  G+   + ++K    A      + + D         + +++     
Sbjct: 203 TEAIHELA--HADKYGVIANLKDIKIDQTATWKAIHKRKEDVVNKVAGSVKMLMTSSKCK 260

Query: 119 VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV--IHIGKLKIPAGR 173
           +++ E       +  +      D  + R   +++ TG+  + +  I        +G 
Sbjct: 261 ILESEAKFVGAREIEV------DGQVYRAKNLIIATGSRAKKLNMIEGFDEGYKSGY 311


>gi|300769976|ref|ZP_07079855.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33861]
 gi|300762452|gb|EFK59269.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33861]
          Length = 468

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA   A+LG  TA+I
Sbjct: 2  QYDVIVIGSGPGGYVAAIRCAQLGLKTAVI 31


>gi|227538425|ref|ZP_03968474.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33300]
 gi|227241707|gb|EEI91722.1| dihydrolipoyl dehydrogenase [Sphingobacterium spiritivorum ATCC
          33300]
          Length = 468

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA   A+LG  TA+I
Sbjct: 2  QYDVIVIGSGPGGYVAAIRCAQLGLKTAVI 31


>gi|307152319|ref|YP_003887703.1| geranylgeranyl reductase [Cyanothece sp. PCC 7822]
 gi|306982547|gb|ADN14428.1| geranylgeranyl reductase [Cyanothece sp. PCC 7822]
          Length = 405

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+G G AG  AA   AK G  T L   K     +  C    GG     +V E D    
Sbjct: 4   VAVVGSGPAGSSAAETLAKAGIETYLFERKLD--NAKPC----GGAIPLCMVSEFD---- 53

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS 113
           L   + D    + ++++            Q   E Y    +RE+L 
Sbjct: 54  LPPEIIDRRVRKMKMISPSNIEVDINLDNQ---EEYIGMCRREVLD 96


>gi|196008545|ref|XP_002114138.1| hypothetical protein TRIADDRAFT_63342 [Trichoplax adhaerens]
 gi|190583157|gb|EDV23228.1| hypothetical protein TRIADDRAFT_63342 [Trichoplax adhaerens]
          Length = 466

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNP----AIGGLGKGHLV 59
           ++I++G G  G   AAV A+ G    ++         I      P    A+  LG    V
Sbjct: 16  EIIIVGSGILGSAMAAVLARDGRRVVVVERDLKEPDRIVGELLQPGGFKALQELGLKAAV 75

Query: 60  REIDA--LDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
             IDA  + G +      G   D +       N+  G A    R       + + +++  
Sbjct: 76  EGIDAHCVRGYVVHDIDSGSKVDLSYPNDDSGNIMTGRAFHHGR-------FVMGLRKLA 128

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIV 138
            ++ N+ +I+  V+    EK  +  I 
Sbjct: 129 QAEPNVTMIEATVSELMEEKGNVIGIR 155


>gi|183984456|ref|YP_001852747.1| dehydrogenase [Mycobacterium marinum M]
 gi|183177782|gb|ACC42892.1| dehydrogenase [Mycobacterium marinum M]
          Length = 394

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           + V+GGG  G EAAA  A+ G    L+       G +   P++   G+  + R++  L 
Sbjct: 147 ITVVGGGLTGIEAAAELAERGRRVTLVCG-----GRLG--PSLSNRGRRSVARQLGKLG 198


>gi|145550163|ref|XP_001460760.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428591|emb|CAK93363.1| unnamed protein product [Paramecium tetraurelia]
          Length = 488

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +D++VIGGG  G  AA  AA+LG  TA +
Sbjct: 22 SQPFDLVVIGGGPGGYVAAIKAAQLGLKTACV 53


>gi|145543566|ref|XP_001457469.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425285|emb|CAK90072.1| unnamed protein product [Paramecium tetraurelia]
          Length = 488

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ +D++VIGGG  G  AA  AA+LG  TA +
Sbjct: 22 SQPFDLVVIGGGPGGYVAAIKAAQLGLKTACV 53


>gi|118619733|ref|YP_908065.1| dehydrogenase [Mycobacterium ulcerans Agy99]
 gi|118571843|gb|ABL06594.1| dehydrogenase [Mycobacterium ulcerans Agy99]
          Length = 394

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           + V+GGG  G EAAA  A+ G    L+       G +   P++   G+  + R++  L 
Sbjct: 147 ITVVGGGLTGIEAAAELAERGRRVTLVCG-----GRLG--PSLSNRGRRSVARQLGKLG 198


>gi|22773770|gb|AAN05019.1| branched-chain alpha-keto acid dehydrogenase complex subunit E3
          [Listeria monocytogenes]
          Length = 477

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|332289993|ref|YP_004420845.1| ribulose-1,5-biphosphate synthetase [Gallibacterium anatis
          UMN179]
 gi|330432889|gb|AEC17948.1| ribulose-1,5-biphosphate synthetase [Gallibacterium anatis
          UMN179]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVI+IG G AG   AA   K G S  L+
Sbjct: 9  KRYDVIIIGAGAAGLFCAAQIGKKGKSVLLL 39


>gi|255527969|ref|ZP_05394809.1| Succinate dehydrogenase [Clostridium carboxidivorans P7]
 gi|255508330|gb|EET84730.1| Succinate dehydrogenase [Clostridium carboxidivorans P7]
          Length = 598

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 56/194 (28%), Gaps = 49/194 (25%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL------------------ITHKTST-IGSMSCN 47
           D++V+GG  AG  AA  AA+ GA   L                   +    T        
Sbjct: 10  DILVVGGSGAGSMAAVTAAEKGAKVLLAVKGKLGKSGNAIMAGAGFSMDGETAYYKYGIK 69

Query: 48  PAIGGLGKGHLVREI-------------DALDGLMGRVADA-----AGIQFRVLNVKKGP 89
            A     K  L +EI             +      G               +V    +  
Sbjct: 70  EADPKSTKEDLFKEIVKQSFYLSDQNMVEQFVNDCGECCWKLKQWIEKAGHKVAFFGEEG 129

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQD-----NS 143
            +   +  AD   Y ++    I      DVIQ   VA    E       V  D       
Sbjct: 130 YITSGKAVADGCRYGVSEAGSI------DVIQDFMVADVLMEDGRAVGAVGIDIYSGEII 183

Query: 144 MIRCSTVVLTTGTF 157
            IR  +V+L TG +
Sbjct: 184 EIRSKSVILATGGY 197


>gi|255026809|ref|ZP_05298795.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          J2-003]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|257069259|ref|YP_003155514.1| flavoprotein disulfide reductase [Brachybacterium faecium DSM
          4810]
 gi|256560077|gb|ACU85924.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
          dehydrogenase component [Brachybacterium faecium DSM
          4810]
          Length = 468

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+++GGG  G EAA  AA+ GA T L+
Sbjct: 3  VVILGGGPGGYEAALTAARHGAETVLL 29


>gi|228474286|ref|ZP_04059021.1| thioredoxin-disulfide reductase [Staphylococcus hominis SK119]
 gi|314936936|ref|ZP_07844283.1| thioredoxin-disulfide reductase [Staphylococcus hominis subsp.
          hominis C80]
 gi|228271645|gb|EEK12992.1| thioredoxin-disulfide reductase [Staphylococcus hominis SK119]
 gi|313655555|gb|EFS19300.1| thioredoxin-disulfide reductase [Staphylococcus hominis subsp.
          hominis C80]
          Length = 313

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    +DV +IG G AG  AA  A++   +T +I
Sbjct: 1  MNEVDFDVAIIGAGPAGMTAAVYASRANLNTVMI 34


>gi|229821710|ref|YP_002883236.1| geranylgeranyl reductase [Beutenbergia cavernae DSM 12333]
 gi|229567623|gb|ACQ81474.1| geranylgeranyl reductase [Beutenbergia cavernae DSM 12333]
          Length = 431

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLV 59
          DVIV+G G AG   A   A+ G    L+   T     +    C   +       LV
Sbjct: 10 DVIVVGAGPAGSATAHYLAQHGLEVLLLEKATFPRDKV----CGDGLTPRAVAELV 61


>gi|254501260|ref|ZP_05113411.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
           DFL-11]
 gi|222437331|gb|EEE44010.1| FAD dependent oxidoreductase, putative [Labrenzia alexandrii
           DFL-11]
          Length = 441

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+++G G+ G  AA   A+ G    L+       G+   N   G +G G  V E D L+
Sbjct: 42  DVVIVGAGYTGLSAALHLAERGLDVVLLEANRVGWGASGRNG--GQVGSGQRV-EQDVLE 98

Query: 67  GLMGRVADA 75
              G+    
Sbjct: 99  NRHGKSHAK 107


>gi|254473655|ref|ZP_05087051.1| glycerol-3-phosphate dehydrogenase [Pseudovibrio sp. JE062]
 gi|211957367|gb|EEA92571.1| glycerol-3-phosphate dehydrogenase [Pseudovibrio sp. JE062]
          Length = 552

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++ +D++V+GGG  G   A +AA+ G    L+  K
Sbjct: 20 SKPWDMVVVGGGITGAGVALMAARAGLDVLLLEQK 54


>gi|119896743|ref|YP_931956.1| putative thioredoxin-disulfide reductase [Azoarcus sp. BH72]
 gi|119669156|emb|CAL93069.1| putative thioredoxin-disulfide reductase [Azoarcus sp. BH72]
          Length = 298

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 46/154 (29%), Gaps = 43/154 (27%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +++ +D +VIGGG AG   A   A+      L+    S    +  +  + G   G     
Sbjct: 1   MSQDFDALVIGGGPAGLTGALYLARFRRRVRLVDDGCSRATRIPRSHNMPGYPDG----- 55

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                                  V+ G  V   R QA R                +D   
Sbjct: 56  -----------------------VRGGELVAAIRLQATRY--------------GVDFAS 78

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
           G V     E    S   + D S      V+L TG
Sbjct: 79  GRVTALEREGTRFS-ARLADGSTTHARAVLLATG 111


>gi|33240821|ref|NP_875763.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus subsp.
          marinus str. CCMP1375]
 gi|33238350|gb|AAQ00416.1| Dihydrolipoamide dehydrogenase [Prochlorococcus marinus subsp.
          marinus str. CCMP1375]
          Length = 481

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREI 62
           +D+IVIG G+ G +AA  AA+ G    ++  +    T  +  C P+   L     VRE+
Sbjct: 7  DFDLIVIGAGYGGFDAAKHAAENGLKVGIVESRELGGTCVNRGCVPSKALLAASGKVREL 66

Query: 63 DALDGLMGRVADAAGIQFR 81
             D L      AA ++F 
Sbjct: 67 ANADHLALFGIHAAPVRFE 85


>gi|29840688|ref|NP_829794.1| dihydrolipoamide dehydrogenase [Chlamydophila caviae GPIC]
 gi|29835038|gb|AAP05672.1| 2-oxo acid dehydrogenase, E3 component, lipoamide dehydrogenase,
           putative [Chlamydophila caviae GPIC]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLV 59
           ++  +D +VIG G  G  AA  AA+ G  TALI  + +  T  +  C P+   L    +V
Sbjct: 1   MSTDFDCVVIGAGPGGYVAAITAAQQGLKTALIEEQQAGGTCLNRGCIPSKALLVGAGIV 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            +I       G   D   + +  +  +K   + G R   +  +              + V
Sbjct: 61  SQIKHAK-QFGIHIDGYSVDYPTMVQRKNTVINGIRQGLEGLIRSNK----------ITV 109

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           + G  +  ++ +  +     QD ++I+   +++ TG+  R
Sbjct: 110 LNGRGSLISSTEVRVKG---QDTTVIKAKHIIIATGSESR 146


>gi|21231728|ref|NP_637645.1| hypothetical protein XCC2290 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768146|ref|YP_242908.1| hypothetical protein XC_1825 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113431|gb|AAM41569.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573478|gb|AAY48888.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 393

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 14/147 (9%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++   DV+V+G G AG  +A  A + G    +          +     + G G+ +    
Sbjct: 1   MSTRCDVLVVGAGAAGLMSAFTAGRRGRQVLV----IDHANKVGKKILMSGGGRCNFTNT 56

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVI 120
                  +                    A   P    +  E + +A   + L Q   DV 
Sbjct: 57  GTTPANFVSANRHFCKSAL---------ARYTPSAFVELVEQHGIAYHEKELGQLFCDVS 107

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRC 147
             ++     ++   + + ++    ++ 
Sbjct: 108 SKQIVRMLLDECEAAGVQIRTQCEVQA 134


>gi|2443316|dbj|BAA22372.1| squalene epoxidase [Homo sapiens]
          Length = 574

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 86/267 (32%), Gaps = 38/267 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPA----IGGLGKGHLV 59
           +VI++G G  G    AV ++ G    +I         I      P     +  LG G  V
Sbjct: 125 EVIIVGAGVLGSALVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTV 184

Query: 60  REIDAL--DGLMGRVAD-AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +DA   +G M    +  + +Q      +      G      R  + +++++  +++ N
Sbjct: 185 EGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGR--FIMSLRKAAMAEPN 242

Query: 117 LDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP- 170
              I+G V     E +++  +        D   +     V+  G F +    +   K+  
Sbjct: 243 AKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSV 302

Query: 171 ----AGRMGDSPSNSLFNSFMK--------FDFDTGRLKT-------GTPARLDGKTIIW 211
                G +  +      N              +     +T       G   R + +  + 
Sbjct: 303 SSHFVGFLMKNAPQFKANHAELILANPSPVLIYRISSSETRVLVDIRGEMPR-NLREYMV 361

Query: 212 DKTEKQFADERLIPFSFMTDKITNRQI 238
           +K   Q  D    PF   TD    R +
Sbjct: 362 EKIYPQIPDHLKEPFLEATDNSHLRSM 388


>gi|120555015|ref|YP_959366.1| hypothetical protein Maqu_2099 [Marinobacter aquaeolei VT8]
 gi|120324864|gb|ABM19179.1| HI0933 family protein [Marinobacter aquaeolei VT8]
          Length = 396

 Score = 39.9 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          YDVI+IG G AG   AA A   G    ++ H
Sbjct: 8  YDVIIIGAGAAGLMCAATAGYRGRRVLVLDH 38


>gi|330684390|gb|EGG96115.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           YDV+VIGGG A   AA   A+ G  T ++      IG         G+     V+E
Sbjct: 208 YDVLVIGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE 258


>gi|330811648|ref|YP_004356110.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum
          NFM421]
 gi|327379756|gb|AEA71106.1| Putative oxidoreductase [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 390

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          +   YD IV+GGG AG  AA   A  G+   L
Sbjct: 1  MTARYDFIVVGGGIAGVSAAYELAAHGSVCLL 32


>gi|325283105|ref|YP_004255646.1| thioredoxin reductase [Deinococcus proteolyticus MRP]
 gi|324314914|gb|ADY26029.1| thioredoxin reductase [Deinococcus proteolyticus MRP]
          Length = 348

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + YDVI++GGG AG  AA    +    T ++
Sbjct: 22 QQYDVIIVGGGPAGLTAAIYTGRGELKTLIL 52


>gi|325963516|ref|YP_004241422.1| thioredoxin reductase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469603|gb|ADX73288.1| thioredoxin reductase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 588

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 40/157 (25%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           ++ +DV+V+G G +G            +TA+                    G   +V E 
Sbjct: 233 DKIFDVVVVGAGPSG-----------LATAVYA---------------SSEGLSTMVVEG 266

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           +A+ G        AG    + N             A R  ++       L  + L + + 
Sbjct: 267 EAVGG-------QAGTSSLIRNYPGFSRGVSGAHLAFRSFHQAWT----LGTDFLFLRK- 314

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
            V G  ++  +  ++ + D + +RC TVV+ TG   R
Sbjct: 315 -VDGLRSDGGL-YAVSISDGTEVRCRTVVVATGVDYR 349


>gi|317507401|ref|ZP_07965135.1| pyridine nucleotide-disulfide oxidoreductase [Segniliparus
          rugosus ATCC BAA-974]
 gi|316254286|gb|EFV13622.1| pyridine nucleotide-disulfide oxidoreductase [Segniliparus
          rugosus ATCC BAA-974]
          Length = 473

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD++VIG G  G +AA  AAKLG S A++
Sbjct: 9  YDLVVIGSGPGGQKAAIAAAKLGKSVAIV 37


>gi|315654668|ref|ZP_07907574.1| CoA-disulfide reductase [Mobiluncus curtisii ATCC 51333]
 gi|315491132|gb|EFU80751.1| CoA-disulfide reductase [Mobiluncus curtisii ATCC 51333]
          Length = 557

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           +VIGGG  G EAA   A+ G +T ++       GS    P +
Sbjct: 151 LVIGGGFIGIEAAEALARRGINTTIVE------GSAHVMPPL 186


>gi|293605145|ref|ZP_06687536.1| oxidoreductase [Achromobacter piechaudii ATCC 43553]
 gi|292816469|gb|EFF75559.1| oxidoreductase [Achromobacter piechaudii ATCC 43553]
          Length = 471

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 7   DVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           DV+++G G  G  AA   A+  G    ++    +  G  S N   G    G L R  
Sbjct: 66  DVVIVGSGFTGLSAALTLARDFGVRALVLEANRAVWGCTSRNGGQGQNASGRLYRSQ 122


>gi|239637226|ref|ZP_04678214.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus warneri
           L37603]
 gi|239597182|gb|EEQ79691.1| alkyl hydroperoxide reductase, F subunit [Staphylococcus warneri
           L37603]
          Length = 507

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           YDV+VIGGG A   AA   A+ G  T ++      IG         G+     V+E
Sbjct: 206 YDVLVIGGGPASGSAAIYTARKGLRTGIVA---DRIGGQV--NDTAGIENFITVKE 256


>gi|257052546|ref|YP_003130379.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B
          [Halorhabdus utahensis DSM 12940]
 gi|256691309|gb|ACV11646.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Halorhabdus utahensis DSM 12940]
          Length = 430

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DV+VIGGG AG   A  A + GA   L++
Sbjct: 8  DVLVIGGGIAGLSTALAARRAGADVRLVS 36


>gi|262193759|ref|YP_003264968.1| FAD dependent oxidoreductase [Haliangium ochraceum DSM 14365]
 gi|262077106|gb|ACY13075.1| FAD dependent oxidoreductase [Haliangium ochraceum DSM 14365]
          Length = 382

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG--SMSCNPAIGGL 53
          V+VIGGG AG   A   A+ G    L+  +  T G  +   N A+G  
Sbjct: 18 VLVIGGGFAGVATAYALARAGCGEVLVLEREDTCGYHASGRNAALGRQ 65


>gi|221199759|ref|ZP_03572802.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD2M]
 gi|221208636|ref|ZP_03581636.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD2]
 gi|221171447|gb|EEE03894.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD2]
 gi|221179998|gb|EEE12402.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD2M]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S  ++        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALNLAERGHSVTVLEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLMGR 71
            M  
Sbjct: 91 RFMPE 95


>gi|221215590|ref|ZP_03588553.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD1]
 gi|221164578|gb|EED97061.1| gamma-glutamylputrescine oxidoreductase (Gamma-glutamylputrescine
          oxidase) (Gamma-Glu-Put oxidase) [Burkholderia
          multivorans CGD1]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S  ++        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALNLAERGHSVTVLEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLMGR 71
            M  
Sbjct: 91 RFMPE 95


>gi|255955127|ref|XP_002568316.1| Pc21g12890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590027|emb|CAP96186.1| Pc21g12890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 606

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 24/156 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH------LVRE 61
           V+V+G G +G   A    + G +  ++  +     +        G   G         R+
Sbjct: 21  VVVVGAGPSGLMLACNLVRFGIAVVILDDRPDKTST--------GKADGMQPKTIETFRQ 72

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-I 120
           +   D L+       G +   ++  +  A    +  + +  Y   +     S   + +  
Sbjct: 73  LGLADSLL-----KNGARVYDISFWESTANESLKRTSRKTHYPEHVGA---SDPYILLAH 124

Query: 121 QGEVAGFNTEKNIISSI-VMQDNSMIRCSTVVLTTG 155
           QG V     +      + V +++  + CS V  TT 
Sbjct: 125 QGMVEEVMVDDMEARGVSVTRNSKFVSCSRVDGTTQ 160


>gi|189528894|ref|XP_686922.3| PREDICTED: peroxisomal sarcosine oxidase [Danio rerio]
          Length = 508

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
           M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 122 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 157


>gi|156230223|gb|AAI51870.1| LOC558601 protein [Danio rerio]
          Length = 415

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 29 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 64


>gi|154496217|ref|ZP_02034913.1| hypothetical protein BACCAP_00502 [Bacteroides capillosus ATCC
          29799]
 gi|150274300|gb|EDN01377.1| hypothetical protein BACCAP_00502 [Bacteroides capillosus ATCC
          29799]
          Length = 301

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+I+IG G AG  AA  A + G S  L+
Sbjct: 2  YDIIIIGAGPAGLTAAIYAKRAGYSALLL 30


>gi|141796274|gb|AAI39649.1| LOC558601 protein [Danio rerio]
          Length = 411

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 25 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 60


>gi|161526165|ref|YP_001581177.1| FAD dependent oxidoreductase [Burkholderia multivorans ATCC
          17616]
 gi|189349119|ref|YP_001944747.1| gamma-glutamylputrescine oxidase [Burkholderia multivorans ATCC
          17616]
 gi|160343594|gb|ABX16680.1| FAD dependent oxidoreductase [Burkholderia multivorans ATCC
          17616]
 gi|189333141|dbj|BAG42211.1| gamma-glutamylputrescine oxidase [Burkholderia multivorans ATCC
          17616]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G  G  AA   A+ G S  ++        +   N   GG   G    +ID   
Sbjct: 34 DVCVIGAGLTGLSAALNLAERGHSVTVLEASRVGWAASGRN---GGQLIGGFACDIDTFG 90

Query: 67 GLMGR 71
            M  
Sbjct: 91 RFMPE 95


>gi|115528568|gb|AAI24588.1| LOC558601 protein [Danio rerio]
          Length = 415

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 29 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 64


>gi|94574419|gb|AAI16494.1| LOC558601 protein [Danio rerio]
          Length = 405

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 19 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 54


>gi|66910265|gb|AAH96805.1| LOC558601 protein [Danio rerio]
          Length = 397

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M ++ +D IVIG G  G   A   AK    T L+  
Sbjct: 11 MSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQ 46


>gi|91786548|ref|YP_547500.1| NADPH-glutathione reductase [Polaromonas sp. JS666]
 gi|91695773|gb|ABE42602.1| NADPH-glutathione reductase [Polaromonas sp. JS666]
          Length = 459

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    +D+ VIGGG  G  AA ++A+ GA  AL
Sbjct: 1  MQTFDFDLFVIGGGSGGVRAARMSAQRGARVAL 33


>gi|33862608|ref|NP_894168.1| dihydrolipoamide dehydrogenase [Prochlorococcus marinus str. MIT
          9313]
 gi|33634524|emb|CAE20510.1| putative dihydrolipoamide dehydrogenase [Prochlorococcus marinus
          str. MIT 9313]
          Length = 489

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNPAIGGLGKGHLVRE 61
           +DVIVIG G+ G +AA  AA  G   A++       G+     C P+   L     VRE
Sbjct: 7  DFDVIVIGAGYGGFDAAKHAADDGLKVAIVE-SGEMGGTCVNRGCVPSKALLAASGRVRE 65

Query: 62 IDALDGLMGRVADAAGIQFR 81
          +   + L G    AA ++F 
Sbjct: 66 LADAEHLSGFGIHAAPVRFE 85


>gi|88809347|ref|ZP_01124855.1| HI0933-like protein [Synechococcus sp. WH 7805]
 gi|88786566|gb|EAR17725.1| HI0933-like protein [Synechococcus sp. WH 7805]
          Length = 420

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+IV+GGG AG  AA  AA+ G +  L+
Sbjct: 10 DLIVVGGGPAGTMAAITAAEQGLAQVLV 37


>gi|86132506|ref|ZP_01051100.1| succinate dehydrogenase flavoprotein subunit [Dokdonia
          donghaensis MED134]
 gi|85817067|gb|EAQ38251.1| succinate dehydrogenase flavoprotein subunit [Dokdonia
          donghaensis MED134]
          Length = 670

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DVIV+G G AG  AAA  A+LG +     
Sbjct: 35 DVIVVGTGLAGGSAAATLAELGYNVKAFC 63


>gi|332292156|ref|YP_004430765.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170242|gb|AEE19497.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 670

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DVIV+G G AG  AAA  A+LG +     
Sbjct: 35 DVIVVGTGLAGGSAAATLAELGYNVKAFC 63


>gi|322372936|ref|ZP_08047472.1| dihydrolipoyl dehydrogenase [Streptococcus sp. C150]
 gi|321277978|gb|EFX55047.1| dihydrolipoyl dehydrogenase [Streptococcus sp. C150]
          Length = 585

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  +A   A+LG   A+I
Sbjct: 124 LADNEYDIIVVGGGPAGYYSAIRGAQLGGKVAII 157


>gi|313673268|ref|YP_004051379.1| thioredoxin reductase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940024|gb|ADR19216.1| thioredoxin reductase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 321

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YD+++IGGG AG  A   AA+    T ++   
Sbjct: 14 YDIVIIGGGPAGLTAGIYAARDNLKTLILEKN 45


>gi|257466278|ref|ZP_05630589.1| glutaredoxin-like protein [Fusobacterium gonidiaformans ATCC
          25563]
 gi|315917435|ref|ZP_07913675.1| thioredoxin reductase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691310|gb|EFS28145.1| thioredoxin reductase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 548

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDVI+IGGG AG  A   A +      L+
Sbjct: 1  MERIYDVIIIGGGPAGLSAGIYAGRAKLDVLLL 33


>gi|238578369|ref|XP_002388697.1| hypothetical protein MPER_12256 [Moniliophthora perniciosa FA553]
 gi|215450207|gb|EEB89627.1| hypothetical protein MPER_12256 [Moniliophthora perniciosa FA553]
          Length = 192

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          DV+VIG G AG   A   A+ G  +  +  +    G+     A  G 
Sbjct: 10 DVLVIGAGPAGLMCAFGLARAGVDSYGLAERLLKEGNQMHMAAFYGP 56


>gi|139439386|ref|ZP_01772827.1| Hypothetical protein COLAER_01846 [Collinsella aerofaciens ATCC
           25986]
 gi|133775165|gb|EBA38985.1| Hypothetical protein COLAER_01846 [Collinsella aerofaciens ATCC
           25986]
          Length = 678

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V V+GGG AG EAA VAAK G    + 
Sbjct: 419 VAVVGGGIAGLEAARVAAKRGYDVTVY 445


>gi|119497613|ref|XP_001265564.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
 gi|119413728|gb|EAW23667.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
          Length = 648

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DV+++G G +G  AAA  A++G  T +I  K
Sbjct: 8  DVLIVGAGPSGLMAAAWMAQMGVKTIIIDQK 38


>gi|330812244|ref|YP_004356706.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum
          NFM421]
 gi|327380352|gb|AEA71702.1| putative oxidoreductase [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 1150

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          I   YDVIVIG G+ G  AA+  ++ G    L+
Sbjct: 11 IQEHYDVIVIGSGYGGGIAASRLSRAGRKVCLL 43


>gi|326803933|ref|YP_004321751.1| dihydrolipoyl dehydrogenase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650678|gb|AEA00861.1| dihydrolipoyl dehydrogenase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVREI 62
           D +V+G G  G  AA  AA++G   A+I      IG    ++ C P+   +  GH   E 
Sbjct: 11  DTVVVGAGPGGYVAAIRAAQMGQKVAIIE--REYIGGVCLNVGCIPSKALIQAGHAYHEA 68

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
           +    + G  + A+    +    K    V+   +              +L +  +++I+G
Sbjct: 69  NGGLDVFGVDSKASLDFTKTQEWKDNSVVKTLTSGV----------EMLLKKNKVEIIRG 118

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177
           E    N  +  +      ++ +      ++ TG+     I I   K   GR+ DS
Sbjct: 119 EAFFNNERELTVMG-EGDEHQLYSYKHAIIATGSHP---IEIKGFKF-GGRVIDS 168


>gi|309779560|ref|ZP_07674321.1| pyridine nucleotide-disulfide oxidoreductase [Ralstonia sp.
          5_7_47FAA]
 gi|308921801|gb|EFP67437.1| pyridine nucleotide-disulfide oxidoreductase [Ralstonia sp.
          5_7_47FAA]
          Length = 420

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +       + S      + G+G  ++         
Sbjct: 10 VAVIGAGPAGLMAAEVLSRNGVRVEVF----DAMPSAGRKFLLAGIGGMNITHS------ 59

Query: 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
                DA   ++R    ++  A    R   D
Sbjct: 60 ---EPLDAFLGRYRT--RREALAPLIGRFSPD 86


>gi|308178646|ref|YP_003918052.1| nitrite reductase (NAD(P)H) subunit [Arthrobacter arilaitensis
           Re117]
 gi|307746109|emb|CBT77081.1| possible nitrite reductase (NAD(P)H) subunit [Arthrobacter
           arilaitensis Re117]
          Length = 496

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++++GGG  G EAA   A+ GA   L+ H     G       +   G   L R +     
Sbjct: 161 ILILGGGVLGIEAALAIARTGAQAVLVHH-----GPAPLGRVVDADGGALLSRNLREAGV 215

Query: 68  LMGRVADAAGIQ 79
            +   A A+GIQ
Sbjct: 216 EVIPGAKASGIQ 227


>gi|300711953|ref|YP_003737767.1| ribulose-1,5-biphosphate synthetase [Halalkalicoccus jeotgali B3]
 gi|299125636|gb|ADJ15975.1| ribulose-1,5-biphosphate synthetase [Halalkalicoccus jeotgali B3]
          Length = 313

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DVI++GGG +G  AA   A+ G  T ++   
Sbjct: 34 DVIIVGGGPSGLMAAKELAERGVKTMVVEKN 64


>gi|269977644|ref|ZP_06184611.1| NADH dehydrogenase [Mobiluncus mulieris 28-1]
 gi|269934247|gb|EEZ90814.1| NADH dehydrogenase [Mobiluncus mulieris 28-1]
          Length = 705

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-DALDG 67
           +VIGGG  G EAA   A+ G  T ++       G+    P         L REI + + G
Sbjct: 201 VVIGGGFIGIEAAEALAQRGLQTTIVE------GAAHVMP--------PLDREIANMVTG 246

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRG 93
            +G +  A     RV ++    A  G
Sbjct: 247 ALGSLGIAVFADTRVESISPVTAGGG 272


>gi|257462963|ref|ZP_05627367.1| thioredoxin reductase [Fusobacterium sp. D12]
 gi|317060580|ref|ZP_07925065.1| thioredoxin reductase [Fusobacterium sp. D12]
 gi|313686256|gb|EFS23091.1| thioredoxin reductase [Fusobacterium sp. D12]
          Length = 308

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 2  INRSYDVIVIGGGHAGCEAA----------AVAAKLGASTALITHKTSTIGSMSCNPA 49
          + + YDVI++G G AG  A            +  K G    L  HK         +P+
Sbjct: 1  MEKIYDVIIVGAGPAGLSAGIYLGRGKVSTLILEKAGVGALLSAHKIENYPGFFHSPS 58


>gi|254562944|ref|YP_003070039.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
          extorquens DM4]
 gi|254270222|emb|CAX26216.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
          extorquens DM4]
          Length = 605

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++DV+++G G AG  A    ++ G  TA IT
Sbjct: 17 DHTFDVVIVGAGGAGLRATVGCSQAGLRTACIT 49


>gi|229819006|ref|YP_002880532.1| dihydrolipoamide dehydrogenase [Beutenbergia cavernae DSM 12333]
 gi|229564919|gb|ACQ78770.1| dihydrolipoamide dehydrogenase [Beutenbergia cavernae DSM 12333]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+V+G G  G  AA  AA+LG S A++  K        +G +     +      
Sbjct: 1  MATHYDVVVLGAGPGGYVAAIRAAQLGKSVAVVEKKYWGGVCLNVGCIPSKALLKNADLA 60

Query: 57 HLVREIDALDGLMGRVADAAG 77
          H +    A  G+ G    A G
Sbjct: 61 HTLNREKAKYGIEGDATMAYG 81


>gi|218531818|ref|YP_002422634.1| succinate dehydrogenase flavoprotein subunit [Methylobacterium
          chloromethanicum CM4]
 gi|218524121|gb|ACK84706.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
          chloromethanicum CM4]
          Length = 605

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++DV+++G G AG  A    ++ G  TA IT
Sbjct: 17 DHTFDVVIVGAGGAGLRATVGCSQAGLRTACIT 49


>gi|163853008|ref|YP_001641051.1| succinate dehydrogenase flavoprotein subunit [Methylobacterium
          extorquens PA1]
 gi|163664613|gb|ABY31980.1| succinate dehydrogenase, flavoprotein subunit [Methylobacterium
          extorquens PA1]
          Length = 605

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          + ++DV+++G G AG  A    ++ G  TA IT
Sbjct: 17 DHTFDVVIVGAGGAGLRATVGCSQAGLRTACIT 49


>gi|148261065|ref|YP_001235192.1| FAD dependent oxidoreductase [Acidiphilium cryptum JF-5]
 gi|146402746|gb|ABQ31273.1| FAD dependent oxidoreductase [Acidiphilium cryptum JF-5]
          Length = 372

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V+V+GGG AG  AA   ++ G +  L        G +  NP      +  ++R   A   
Sbjct: 6  VLVVGGGIAGLSAAWGLSRRGFAVELFEQ-----GPLP-NPRASSHDEHRIIR--HAYGE 57

Query: 68 LMGRVADAAGI 78
          L G        
Sbjct: 58 LEGYAHMMPAA 68


>gi|87120392|ref|ZP_01076287.1| sarcosine oxidase beta subunit [Marinomonas sp. MED121]
 gi|86164495|gb|EAQ65765.1| sarcosine oxidase beta subunit [Marinomonas sp. MED121]
          Length = 422

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          DV ++G G++G   A   AK G    ++   T   G    N  +   G
Sbjct: 29 DVAIVGAGYSGLSCALELAKKGLKVVVLEANTVGYGGSGRNVGLVNAG 76


>gi|315053485|ref|XP_003176116.1| phenol 2-monooxygenase [Arthroderma gypseum CBS 118893]
 gi|311337962|gb|EFQ97164.1| phenol 2-monooxygenase [Arthroderma gypseum CBS 118893]
          Length = 699

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCNPAIGGLGKGHLV- 59
              Y+V+++G G AG     + ++ G    + L      TI        I       L  
Sbjct: 37  EDRYEVVIVGAGPAGMLLKLLLSRFGLGDKSVLCIESRDTILRAGQADGIQPRTMEVLKS 96

Query: 60  ----REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQE 115
                EI    G +  VA    +Q +  N ++  A RG    A  +   LA +    +  
Sbjct: 97  LGLMHEISTDGGQVWEVAFWNPVQPQGENGEQDAAPRGIERTAIVDDVALATRYPHEATT 156

Query: 116 NLDVIQGEVAGFNTEK 131
           +    QG+V     + 
Sbjct: 157 H----QGKVERILEDD 168


>gi|312862822|ref|ZP_07723062.1| dihydrolipoyl dehydrogenase [Streptococcus vestibularis F0396]
 gi|322516773|ref|ZP_08069679.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           vestibularis ATCC 49124]
 gi|311101682|gb|EFQ59885.1| dihydrolipoyl dehydrogenase [Streptococcus vestibularis F0396]
 gi|322124695|gb|EFX96147.1| dihydrolipoamide dehydrogenase component E3 [Streptococcus
           vestibularis ATCC 49124]
          Length = 582

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +  YD+IV+GGG AG  +A   A+LG   A+I
Sbjct: 123 DNEYDIIVVGGGPAGYYSAIRGAQLGGKVAII 154


>gi|309812745|ref|ZP_07706484.1| FAD dependent oxidoreductase [Dermacoccus sp. Ellin185]
 gi|308433262|gb|EFP57155.1| FAD dependent oxidoreductase [Dermacoccus sp. Ellin185]
          Length = 520

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +  YDVIV+G G  G   A  AA  G  TALI
Sbjct: 16 LAHERYDVIVVGAGVTGAGVALDAASRGLRTALI 49


>gi|284801756|ref|YP_003413621.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5578]
 gi|284994898|ref|YP_003416666.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5923]
 gi|284057318|gb|ADB68259.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5578]
 gi|284060365|gb|ADB71304.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 08-5923]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|269797013|ref|YP_003316468.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase component [Sanguibacter keddieii DSM
           10542]
 gi|269099198|gb|ACZ23634.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           dehydrogenase component [Sanguibacter keddieii DSM
           10542]
          Length = 493

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREI 62
           +YDVIV+G G  G  AA  A + G S A++  +         +C P+   L  G ++   
Sbjct: 18  TYDVIVVGAGAVGENAADRAGRTGLSVAVVEAELVGGECSYWACMPSKALLRPGAVLEAA 77

Query: 63  DALDGLMGRVADAAGIQFRVL-NVKKGPAVRGPRTQADR 100
            A+ G    +        +VL       +     +Q D 
Sbjct: 78  RAVPGA-AEMITGTLDPAKVLARRDSFTSGWDDSSQVDW 115


>gi|253999007|ref|YP_003051070.1| tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein
           MnmC [Methylovorus sp. SIP3-4]
 gi|253985686|gb|ACT50543.1| tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein
           MnmC [Methylovorus sp. SIP3-4]
          Length = 688

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA 49
           IVIGGG AGC  +   A+ G    LI        + S NP 
Sbjct: 289 IVIGGGIAGCATSHALAQRGWQVTLIERHPQIAEAASGNPL 329


>gi|194760380|ref|XP_001962419.1| GF15453 [Drosophila ananassae]
 gi|190616116|gb|EDV31640.1| GF15453 [Drosophila ananassae]
          Length = 472

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAA--AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
          ++R  D +V+GGG AG   A      +  AS  L+T         +  P    L K   V
Sbjct: 1  MSRKCDFLVVGGGIAGVSCAETLAICRPNASILLLTESRIVKSVTNLVPIARYLHKFD-V 59

Query: 60 REIDALDGLMGRVADAAGIQFRVLNVKK 87
          RE D     MG   D    Q   +N  +
Sbjct: 60 REQDV--SEMGVTIDTLVDQLDHINSSE 85


>gi|184158140|ref|YP_001846479.1| monoamine oxidase [Acinetobacter baumannii ACICU]
 gi|332872690|ref|ZP_08440657.1| amine oxidase [Acinetobacter baumannii 6014059]
 gi|183209734|gb|ACC57132.1| Monoamine oxidase [Acinetobacter baumannii ACICU]
 gi|322508458|gb|ADX03912.1| L-Amino-acid oxidase [Acinetobacter baumannii 1656-2]
 gi|323518081|gb|ADX92462.1| monoamine oxidase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739084|gb|EGJ69944.1| amine oxidase [Acinetobacter baumannii 6014059]
          Length = 435

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M    YD+ VIG G AG  AA   +  G    L+  +   IG
Sbjct: 1  MKKYDYDIAVIGAGCAGVVAARDLSNAGHKVVLLEAR-DRIG 41


>gi|170751795|ref|YP_001758055.1| squalene-associated FAD-dependent desaturase [Methylobacterium
          radiotolerans JCM 2831]
 gi|170658317|gb|ACB27372.1| squalene-associated FAD-dependent desaturase [Methylobacterium
          radiotolerans JCM 2831]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V V+G G AG  AA   A+ GA   L 
Sbjct: 4  VHVVGAGLAGLSAAVALAETGARVVLH 30


>gi|224501686|ref|ZP_03669993.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes FSL
          R2-561]
 gi|254829872|ref|ZP_05234527.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes 10403S]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|126649884|ref|ZP_01722120.1| acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
           [Bacillus sp. B14905]
 gi|126593603|gb|EAZ87548.1| acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
           [Bacillus sp. B14905]
          Length = 461

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
            ++D+ +IG G  G  AA  AAK G   ALI      +G    ++ C P+   L    LV
Sbjct: 18  ENFDIAIIGAGPGGYVAAIHAAKNGKRVALIE--RDKLGGACYNVGCIPSKILLEHSKLV 75

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKK 87
           + I+      G   D   I F  L  +K
Sbjct: 76  QAIN-QGNNWGIETDNVRINFPRLMQRK 102


>gi|86748878|ref|YP_485374.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris HaA2]
 gi|86571906|gb|ABD06463.1| assimilatory nitrate reductase (NADH) beta subunit
           [Rhodopseudomonas palustris HaA2]
          Length = 410

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL 68
           +VIGGG  G EAA   AK G    ++ H    +     +P         L R ++     
Sbjct: 150 VVIGGGLLGLEAAYGLAKSGTKVTVV-HLMDRLMERQLDP----TAAAMLKRAVERKGIT 204

Query: 69  MGRVADAAGI 78
           +   AD A I
Sbjct: 205 VELSADTAAI 214


>gi|34540584|ref|NP_905063.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Porphyromonas gingivalis W83]
 gi|34396897|gb|AAQ65962.1| alpha keto acid dehydrogenase complex, E3 component, lipoamide
          dehydrogenase [Porphyromonas gingivalis W83]
          Length = 449

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YD+ +IGGG AG  AA  AAK G  T LI   
Sbjct: 3  YDLAIIGGGPAGYTAAERAAKGGLKTLLIEKN 34


>gi|16803411|ref|NP_464896.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes EGD-e]
 gi|16410787|emb|CAC99449.1| lmo1371 [Listeria monocytogenes EGD-e]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|23097776|ref|NP_691242.1| pyridine nucleotide-disulfide oxidoreductase [Oceanobacillus
          iheyensis HTE831]
 gi|22776000|dbj|BAC12277.1| pyridine nucleotide-disulfide oxidoreductase (divided with OB0321
          and OB0322) [Oceanobacillus iheyensis HTE831]
          Length = 148

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D IVIGGG AG  AA V  + G    + 
Sbjct: 3  DSIVIGGGPAGLSAALVLGRAGKRVVVF 30


>gi|332664447|ref|YP_004447235.1| phytoene desaturase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333261|gb|AEE50362.1| phytoene desaturase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 68/254 (26%), Gaps = 38/254 (14%)

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
            EV        + + ++ QD+       VV            +   +             
Sbjct: 245 QEVKQILAPHGLATKVITQDH-EYTADAVVGGADYHHLDQQVLAPEQRNYDAAYWDKRVM 303

Query: 182 LFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFA----DERLIPFSFMTDKITNRQ 237
             +S + +     RLK      L    + +D+   Q A    D+   P   +        
Sbjct: 304 APSSLLFYLGVNKRLK-----NLHHHNLFFDEDFTQHAIEIYDDPRWPEKPL-------F 351

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
             C  + T+        EN+      +           P++ED   R  E+  + +    
Sbjct: 352 YVCAPSITDPTVAPEGHENLFVLIPVA-----------PNLEDTEAR-REQYYNLVMERL 399

Query: 298 EGLNTDVVY-PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLE 356
           E L    +        +              G          Y +         L P L 
Sbjct: 400 ERLTGQEIRSAVVYKRSYAHADFETDYHAFKG--------NAYGLANTLFQTAFLKPKLR 451

Query: 357 TKKISGLFLAGQIN 370
           +KKI  LF  GQ+ 
Sbjct: 452 SKKIKNLFFTGQLT 465


>gi|332185927|ref|ZP_08387674.1| FAD dependent oxidoreductase family protein [Sphingomonas sp.
          S17]
 gi|332014285|gb|EGI56343.1| FAD dependent oxidoreductase family protein [Sphingomonas sp.
          S17]
          Length = 302

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          D I+IG G AG  AA   A+      +    +S    + C     G  +G   +      
Sbjct: 3  DCIIIGAGPAGLTAAIYLARYHLRIRMFDSGSSRAAMIPCTHNHAGFPEGISGK------ 56

Query: 67 GLMGRVADAA 76
           L+ R+ D A
Sbjct: 57 ALLARMHDQA 66


>gi|329298876|ref|ZP_08256212.1| hypothetical protein Pstas_24621 [Plautia stali symbiont]
          Length = 399

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 27/166 (16%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI-------------THKTSTIGSMSCNPAIGGL 53
           D  ++GGG AG   A +  + G    +I             T   ST+  M     +  L
Sbjct: 10  DCCIVGGGPAGLMLAYLLTRAGLRAVVIEKHADFLRDFRGDTIHPSTLEIMHQLGLLDAL 69

Query: 54  GKGHLVREID---ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
                 R       + G    +AD + +  R   +   P          +  +   +  +
Sbjct: 70  LALPHQRADKLQAEVGGQEITMADFSRLPLRCRFIAFMP----------QWDFLTFLAAQ 119

Query: 111 ILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   ++Q      F  +  +I+ +       I    VV   G
Sbjct: 120 AAHYPGFTLLQSTGFDDFLYQDGVIAGVKTLQGHEIHAPLVVGADG 165


>gi|312795912|ref|YP_004028834.1| monooxygenase VisC [Burkholderia rhizoxinica HKI 454]
 gi|312167687|emb|CBW74690.1| Putative monooxygenase VisC [Burkholderia rhizoxinica HKI 454]
          Length = 443

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          + ++ VIVIGGG  G  AA    + G   AL+  
Sbjct: 55 HSNHQVIVIGGGLVGKAAALALTQTGLRVALLAQ 88


>gi|312130207|ref|YP_003997547.1| all-trans-retinol 13,14-reductase [Leadbetterella byssophila DSM
          17132]
 gi|311906753|gb|ADQ17194.1| All-trans-retinol 13,14-reductase [Leadbetterella byssophila DSM
          17132]
          Length = 499

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          + +DVI+IG G  G  +A + AK G    ++    +  G   C        K  L   + 
Sbjct: 2  KYFDVIIIGSGLGGLTSALILAKEGKKVLVLEKN-NQFG--GCLQTFARD-KTILDTGVH 57

Query: 64 ALDGL 68
           + GL
Sbjct: 58 YIGGL 62


>gi|302528653|ref|ZP_07280995.1| mhqA protein [Streptomyces sp. AA4]
 gi|302437548|gb|EFL09364.1| mhqA protein [Streptomyces sp. AA4]
          Length = 591

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-------IGSMSCNPAIGGLGKGHLV 59
           DV+V+G G AG  A+A+ A  G     IT    T       I +         LG    V
Sbjct: 18  DVLVVGAGPAGLTASALLAAQGVRAVTITKYPGTAHSPRAHITNQRTMEVFRDLGLEDAV 77

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKK----GPAVRGPRTQA 98
           R++   + LMG    A     + L   K    G A       A
Sbjct: 78  RKVAVPNALMGDNVWATSFAGQELARLKTWGSGTARHADYVAA 120


>gi|302349169|ref|YP_003816807.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide E3
           component-like enzyme [Acidilobus saccharovorans 345-15]
 gi|302329581|gb|ADL19776.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide E3
           component-like enzyme [Acidilobus saccharovorans 345-15]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V ++GGG+ G EAA V ++ G    L+      +             +    R +D   G
Sbjct: 181 VAIVGGGYIGVEAAEVLSRFGVKVTLVEM-MDRLLPNMPMDLSRAALRALQRRGVDVRLG 239

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGF 127
                 +  G Q +VL           R     E+    +   +  +  L+    EV G 
Sbjct: 240 YAASSVERRG-QAKVLRATS-------RDGGSIEVRADEVIMAVGRRPRLEGYGLEVLGL 291

Query: 128 NTE-KNIIS-SIVMQDNSMIRCSTVVL 152
           +      +S  +     ++     V  
Sbjct: 292 DVGPGIKVSPGMRTSRENVFAAGDVTG 318


>gi|296392577|ref|YP_003657461.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Segniliparus rotundus DSM 44985]
 gi|296179724|gb|ADG96630.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Segniliparus rotundus DSM 44985]
          Length = 473

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YD++VIG G  G +AA  AAKLG S A++  K
Sbjct: 9  YDLVVIGSGPGGQKAAIAAAKLGKSVAIVERK 40


>gi|257452409|ref|ZP_05617708.1| glutaredoxin-like protein [Fusobacterium sp. 3_1_5R]
 gi|317058952|ref|ZP_07923437.1| thioredoxin reductase [Fusobacterium sp. 3_1_5R]
 gi|313684628|gb|EFS21463.1| thioredoxin reductase [Fusobacterium sp. 3_1_5R]
          Length = 548

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDVI+IGGG AG  A   A +      L+
Sbjct: 1  MERIYDVIIIGGGPAGLSAGIYAGRAKLDVLLL 33


>gi|215402080|gb|ACJ66628.1| lycopene beta-cyclase [Actinidia chinensis]
          Length = 493

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 19/239 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           +DVI+IG G AG   A   ++ G     +              ++     G  V E ++L
Sbjct: 77  FDVIIIGTGPAGLRLAERVSRYGIKVCCVDPSP---------LSMWPNNYGVWVDEFESL 127

Query: 66  DGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
                   D      RV +N  K   +  P  +  R+  ++ +    LS   +   Q +V
Sbjct: 128 GLE--DCLDKTWPVARVSINDHKTKYLDRPYGRVSRKELKMKLLEGCLSN-GVKFHQAKV 184

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR----GVIHIGKLKIPAGRMGDSPSN 180
                ++   S +   D + ++   VV  +G                +I  G + +   +
Sbjct: 185 WKVEHQEFE-SFVECSDGNELKACLVVDASGFSSSFTEYDKPRNHGYQIAHGILAEVDCH 243

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239
                 M    D      G+   +      +         +  + F   T  ++   + 
Sbjct: 244 PFDLDKMVL-MDWRDFHLGSEPCIRASNSRFPTFLYVMPFDSNLIFLEETSLVSRPVLS 301


>gi|194476742|ref|YP_002048921.1| Geranylgeranyl reductase [Paulinella chromatophora]
 gi|171191749|gb|ACB42711.1| Geranylgeranyl reductase [Paulinella chromatophora]
          Length = 456

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 34/167 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V V+GGG +G  AA V AK G  T L   K     +  C    GG     +V E D  + 
Sbjct: 4   VAVVGGGPSGSCAAEVLAKAGIQTWLFERKLD--NAKPC----GGAIPLCMVEEFDLPES 57

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ-ENLDVIQGEVAG 126
               + D      ++++                      +   + +  E + + + EV  
Sbjct: 58  ----IIDRKVRNMKMISPS-----------------NREVDIRLENTDEYIGMCRREVMD 96

Query: 127 FNTEKNIIS-SIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
               K  +     + +  +       + TG   +G   I      AG
Sbjct: 97  GFLRKRAVDLGAKLVNGLVHS-----IDTGKNRQGPYTIHYANYSAG 138


>gi|209886386|ref|YP_002290243.1| amine oxidase [Oligotropha carboxidovorans OM5]
 gi|209874582|gb|ACI94378.1| amine oxidase [Oligotropha carboxidovorans OM5]
          Length = 511

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
          YD+I++G G  G  + A+ A+ G    +I            + ++GG    + V ++   
Sbjct: 3  YDIIIVGAGLGGLTSGALLARAGRKVLVIE----------KSNSVGGAASSYKVGDLFVE 52

Query: 66 DGLM 69
            L 
Sbjct: 53 GSLH 56


>gi|149278106|ref|ZP_01884245.1| phytoene dehydrogenase (phytoene desaturase) [Pedobacter sp. BAL39]
 gi|149231304|gb|EDM36684.1| phytoene dehydrogenase (phytoene desaturase) [Pedobacter sp. BAL39]
          Length = 500

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 338 GYAIEYDYINPKELFPTLETKKISGLFLAGQIN 370
            Y +    +    L P+L+ KKI  LF AGQ+ 
Sbjct: 442 AYGLANTLMQTANLKPSLKNKKIDNLFYAGQLT 474


>gi|134096501|ref|YP_001101576.1| dihydrolipoamide dehydrogenase [Herminiimonas arsenicoxydans]
 gi|133740404|emb|CAL63455.1| Putative dihydrolipoamide dehydrogenase [Herminiimonas
          arsenicoxydans]
          Length = 477

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPA 49
          M    +DV VIG G AG  A   A   G   ALI      +T   + C P+
Sbjct: 1  MKTLEFDVAVIGAGSAGMSAYRAAKTHGKRVALIESGPYGTTCARVGCMPS 51


>gi|91215765|ref|ZP_01252735.1| FAD dependent oxidoreductase, putative [Psychroflexus torquis
          ATCC 700755]
 gi|91186231|gb|EAS72604.1| FAD dependent oxidoreductase, putative [Psychroflexus torquis
          ATCC 700755]
          Length = 371

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YDVI+IGGG AG  +A   +K G    L+
Sbjct: 2  NTYDVIIIGGGLAGLTSAIDLSKDGLQVLLL 32


>gi|84489562|ref|YP_447794.1| dehydrogenase [Methanosphaera stadtmanae DSM 3091]
 gi|84372881|gb|ABC57151.1| predicted dehydrogenase [Methanosphaera stadtmanae DSM 3091]
          Length = 382

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGA-----STALITHKTSTIGSMSCNPAIGGLG-KGHLVR 60
           D++++GGG +G     +AAK G         L    T T        ++  +G K     
Sbjct: 6   DILIVGGGPSG----LLAAKEGCFNNNKVVLLDKDNTDTYNEYITKTSLRQIGIKEDDSW 61

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            ++  +G +    D    +  + N              D+  +  A++ +I   EN+++I
Sbjct: 62  IVNQTNGFILEAMDE---KLVLDNTTTVQPE--EAYIIDKNKFIKALRDDIK--ENVEII 114

Query: 121 QGEVAGF-NTEKNIISSIVMQDNS-MIRCSTVVLTTGTF 157
             E     + +  ++           I    +++ +G  
Sbjct: 115 DTEAKTITHIKDKVVVEAENSTGKYTITTKILIIASGYH 153


>gi|82703662|ref|YP_413228.1| hypothetical protein Nmul_A2547 [Nitrosospira multiformis ATCC
          25196]
 gi|82411727|gb|ABB75836.1| HI0933-like protein [Nitrosospira multiformis ATCC 25196]
          Length = 394

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV+VIG G AG   A  A K G S  L+ H
Sbjct: 4  DVVVIGAGAAGMMCAMEAGKRGRSVLLVDH 33


>gi|295704920|ref|YP_003597995.1| pyridine nucleotide-disulfide oxidoreductase family protein
          [Bacillus megaterium DSM 319]
 gi|294802579|gb|ADF39645.1| Pyridine nucleotide-disulfide oxidoreductase family protein
          [Bacillus megaterium DSM 319]
          Length = 303

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          +   YD ++IGGG AG +AA    +   S  +I               I G  +G   + 
Sbjct: 1  MTDKYDCVIIGGGIAGLQAAIQLGRYKRSVLVIDSNDGRSNLCKNYQNILGWSEGISGQT 60

Query: 62 IDALDGLMGRVADAAGIQFRVLNVKK 87
          +        +       + RVL  +K
Sbjct: 61 LRETGRQQAKSYGIQFAEERVLQCEK 86


>gi|294649675|ref|ZP_06727086.1| monoamine oxidase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824429|gb|EFF83221.1| monoamine oxidase [Acinetobacter haemolyticus ATCC 19194]
          Length = 435

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M    YDV VIG G AG  AA   +  G    L+  +   IG
Sbjct: 1  MSKSIYDVAVIGAGCAGVVAARDLSNAGHKVVLLEAR-DRIG 41


>gi|302869390|ref|YP_003838027.1| Kynurenine 3-monooxygenase [Micromonospora aurantiaca ATCC 27029]
 gi|315504131|ref|YP_004083018.1| kynurenine 3-monooxygenase [Micromonospora sp. L5]
 gi|302572249|gb|ADL48451.1| Kynurenine 3-monooxygenase [Micromonospora aurantiaca ATCC 27029]
 gi|315410750|gb|ADU08867.1| Kynurenine 3-monooxygenase [Micromonospora sp. L5]
          Length = 442

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVR 60
           ++   ++ V+G G AGC  A   A+ G   AL   +     G+     +I        + 
Sbjct: 1   MSERDEIAVVGAGLAGCLLACYLARRGYPVALYERRPDPRTGTAERGRSINLALSERGLD 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKG-PAVRGPRTQADR 100
            +  +      +ADA  ++ R+++  +G P  +      DR
Sbjct: 61  ALRRIGLEDEVMADALPMRGRMIHPVEGEPEFQSYSGSGDR 101


>gi|257462223|ref|ZP_05626640.1| glutaredoxin-like protein [Fusobacterium sp. D12]
 gi|317059893|ref|ZP_07924378.1| thioredoxin reductase [Fusobacterium sp. D12]
 gi|313685569|gb|EFS22404.1| thioredoxin reductase [Fusobacterium sp. D12]
          Length = 548

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + R YDVI+IGGG AG  A   A +      L+
Sbjct: 1  MERIYDVIIIGGGPAGLSAGIYAGRAKLDVLLL 33


>gi|255524734|ref|ZP_05391686.1| thioredoxin reductase [Clostridium carboxidivorans P7]
 gi|296185695|ref|ZP_06854104.1| thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
 gi|255511628|gb|EET87916.1| thioredoxin reductase [Clostridium carboxidivorans P7]
 gi|296049823|gb|EFG89248.1| thioredoxin-disulfide reductase [Clostridium carboxidivorans P7]
          Length = 306

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD I+IGGG AG  A   AA+   +T +I
Sbjct: 1  MAQIYDTIIIGGGPAGLSAGLYAARSRMNTLII 33


>gi|227874556|ref|ZP_03992719.1| coA-disulfide reductase [Mobiluncus mulieris ATCC 35243]
 gi|227844765|gb|EEJ54911.1| coA-disulfide reductase [Mobiluncus mulieris ATCC 35243]
          Length = 681

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-DALDG 67
           +VIGGG  G EAA   A+ G  T ++       G+    P         L REI + + G
Sbjct: 177 VVIGGGFIGIEAAEALAQRGLQTTIVE------GAAHVMPL--------LDREIANMVTG 222

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            +G +  A     RV ++    A  G R + 
Sbjct: 223 ALGSLGIAVFADTRVESISPVTAG-GGRGEV 252


>gi|167045490|gb|ABZ10143.1| putative Pyridine nucleotide-disulphide oxidoreductase
          [uncultured marine microorganism HF4000_APKG10H11]
          Length = 503

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YDV++IGGGH G  A+A  +K G  T ++  +    G  +      G
Sbjct: 4  YDVVIIGGGHNGLVASAYLSKAGLKTLVVERRGINGGMAATENIFPG 50


>gi|189210293|ref|XP_001941478.1| monoxygenase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977571|gb|EDU44197.1| monoxygenase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 486

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 27/194 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+++G G AG  AA    + G +  ++      I +      +G        R +    
Sbjct: 15  DVLIVGTGLAGLVAALECTRKGHNVRVLERNAD-INTAGDMYFMGLSA----TRFLKHWP 69

Query: 67  GLMGRVADAA-GIQFRVLNVKKGPAVRGPRTQADR---------------ELYRLAMQRE 110
            L+      +    +       G  V GP+  ADR               ++  L  +  
Sbjct: 70  ELLKEYKKISLHNAWIETFKHSGEVVIGPKKVADRLRAQGLDPDTPPGEFQMRPLVYKMF 129

Query: 111 ILSQENLDVI----QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166
           + + ENL V     +  V  F  E+         D        V+   G   +    +G 
Sbjct: 130 VNAVENLGVSVEFNRRVVDYFEDEETGKGGCTTDDGKRYEADVVIAADGVGSKSQKLVGG 189

Query: 167 L--KIPAGRMGDSP 178
                P+GR     
Sbjct: 190 QVRARPSGRAMWRA 203


>gi|169260271|gb|ACA52024.1| L-amino acid oxidase [Streptococcus oligofermentans]
          Length = 391

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
             +D I+IGGG AG  A   ++  G  T L+         +    A  G G+ ++    +
Sbjct: 2   NHFDTIIIGGGPAGMMATISSSFYGQKTLLLEKNK----RLGKKLAGTGGGRCNVTNNGN 57

Query: 64  ALDGLM------GRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ 114
            LD LM      GR   +   QF   ++       G + + +   R        R I   
Sbjct: 58  -LDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPVTDKSRTI--I 114

Query: 115 ENLDVIQGEVAGFNTEKNIISSIVMQD--------NSMIRCSTVVLTTG 155
           E L+    E+ G       I S+   D        +    C  +++TTG
Sbjct: 115 EALEKKIAELGGTVITNTEIVSVKKTDELFTVRSSDQAWTCQKLIVTTG 163


>gi|163735418|ref|ZP_02142851.1| geranylgeranyl hydrogenase [Roseobacter litoralis Och 149]
 gi|161391231|gb|EDQ15567.1| geranylgeranyl hydrogenase [Roseobacter litoralis Och 149]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDV+VIGGG +G  AA    + G   AL+
Sbjct: 2  YDVVVIGGGPSGATAALDLVQSGHKVALL 30


>gi|145222322|ref|YP_001133000.1| hypothetical protein Mflv_1732 [Mycobacterium gilvum PYR-GCK]
 gi|315442757|ref|YP_004075636.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
 gi|145214808|gb|ABP44212.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315261060|gb|ADT97801.1| phytoene dehydrogenase-like oxidoreductase [Mycobacterium sp.
          Spyr1]
          Length = 520

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
              D +++GGGH G  AAA  A+ G    ++  +   +G
Sbjct: 7  TEHRDAVIVGGGHNGLVAAAYLARAGRRVLVLE-RLDQVG 45


>gi|148262876|ref|YP_001229582.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Geobacter uraniireducens
          Rf4]
 gi|146396376|gb|ABQ25009.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Geobacter uraniireducens Rf4]
          Length = 598

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          ++  DVIVIG G  G  AA VA + GA   L+     
Sbjct: 48 DKETDVIVIGAGATGLPAAIVAREAGAKVILVEASFD 84


>gi|328887295|emb|CCA60534.1| iron-sulfur binding oxidoreductase [Streptomyces venezuelae ATCC
          10712]
          Length = 512

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV VIG G AG   A    + GA  AL+               +     GH   ++ A  
Sbjct: 31 DVAVIGAGVAGISTAWELGRAGARVALLEADR-----------LAAGVTGHTTAKLSAQH 79

Query: 67 GLM 69
          GL+
Sbjct: 80 GLL 82


>gi|326332023|ref|ZP_08198308.1| 2,4-dichlorophenol 6-monooxygenase [Nocardioidaceae bacterium
          Broad-1]
 gi|325950161|gb|EGD42216.1| 2,4-dichlorophenol 6-monooxygenase [Nocardioidaceae bacterium
          Broad-1]
          Length = 582

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 7  DVIVIGGGHAG-CEAAAVAAKLGASTALIT------HKT-STIGSMSCNPAIGGLGKGHL 58
          DV+V+G G AG   AA +AA  G     +T      H   + I +         LG    
Sbjct: 8  DVLVVGAGPAGLSMAALLAA-YGVDAVTVTKYAGTAHSPRAHITNQRTMEVFRDLGLEEA 66

Query: 59 VREIDALDGLMGRVADAA 76
          VRE+   + LMG    A 
Sbjct: 67 VREVATPNALMGNNVWAT 84


>gi|315223972|ref|ZP_07865816.1| All-trans-retinol 13,14-reductase [Capnocytophaga ochracea F0287]
 gi|314946076|gb|EFS98081.1| All-trans-retinol 13,14-reductase [Capnocytophaga ochracea F0287]
          Length = 499

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---CNPA--------IGG 52
          + YDV+VIG G +G  +A + AK G    ++       G++     N          IG 
Sbjct: 2  KQYDVLVIGSGLSGLFSALLLAKAGKKVCILEKNEQYGGNLQTFVRNNTLFDTGVHYIGS 61

Query: 53 LGKGHLVRE 61
          L +G ++ E
Sbjct: 62 LAEGQVLYE 70


>gi|312132151|ref|YP_003999491.1| dihydrolipoamide dehydrogenase [Leadbetterella byssophila DSM
          17132]
 gi|311908697|gb|ADQ19138.1| dihydrolipoamide dehydrogenase [Leadbetterella byssophila DSM
          17132]
          Length = 466

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIG G  G  AA   A+LG  TA++
Sbjct: 2  QYDVIVIGSGPGGYVAAIRCAQLGFKTAIV 31


>gi|302036426|ref|YP_003796748.1| putative thiazole biosynthesis enzyme [Candidatus Nitrospira
          defluvii]
 gi|300604490|emb|CBK40822.1| putative Thiazole biosynthesis enzyme [Candidatus Nitrospira
          defluvii]
          Length = 266

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DVI++G G +G   A    ++G  T ++    
Sbjct: 33 DVIIVGAGPSGLICAHDLGRMGIKTLIVEQSL 64


>gi|298675341|ref|YP_003727091.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288329|gb|ADI74295.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 789

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           + +V+VIGGG AG EAA   A  G    ++  + S  G M
Sbjct: 141 NRNVLVIGGGVAGIEAALNLADAGYHVYMVEKEPSIGGKM 180


>gi|254504095|ref|ZP_05116246.1| dihydrolipoamide dehydrogenase [Labrenzia alexandrii DFL-11]
 gi|222440166|gb|EEE46845.1| dihydrolipoamide dehydrogenase [Labrenzia alexandrii DFL-11]
          Length = 482

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + +YDVI+IG G  G   A  AA+LG  TA++
Sbjct: 1  MADTNYDVIIIGSGPGGYVTAIRAAQLGLKTAIV 34


>gi|167741651|ref|ZP_02414425.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           14]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNAE 423


>gi|163854636|ref|YP_001628934.1| hypothetical protein Bpet0331 [Bordetella petrii DSM 12804]
 gi|163258364|emb|CAP40663.1| trxB2 [Bordetella petrii]
          Length = 308

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP-----------AIGG 52
           + YD +++GGG AG   A   A+LG +  L+       G  + NP             G 
Sbjct: 12  QQYDAVIVGGGPAGASCAIWLARLGLAPLLVEAGPRLGGLATDNPFADDWIAVLPGVTGQ 71

Query: 53  LGKGHLVREIDALD-----GLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQAD 99
               ++   + A       G   R A      F V L+     A    R    
Sbjct: 72  QVAANIAASVQAAGVPARLGTAVRQARRVSGGFDVELDAGGVAATVRGRALVI 124


>gi|308810629|ref|XP_003082623.1| Cytochrome b5 (ISS) [Ostreococcus tauri]
 gi|116061092|emb|CAL56480.1| Cytochrome b5 (ISS) [Ostreococcus tauri]
          Length = 614

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREIDALD 66
           VIVIGGG AG  AA    + GA   L          +  N      G  G L R    L+
Sbjct: 29  VIVIGGGLAGLSAAHTVLEHGARVVL----LDKCSFLGGNSTKATSGINGALTRTQARLN 84

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRG 93
             +   AD         ++ KG A  G
Sbjct: 85  --IPDSADKFED-----DIIKGAAGVG 104


>gi|51895837|gb|AAH81267.1| LOC446968 protein [Xenopus laevis]
          Length = 545

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIGGG +G  AA +  + G + A++
Sbjct: 25 MDNKYDVIVIGGGISGLTAAKLLVESGLNVAVL 57


>gi|86357992|ref|YP_469884.1| glutathione reductase [Rhizobium etli CFN 42]
 gi|86282094|gb|ABC91157.1| glutathione reductase protein [Rhizobium etli CFN 42]
          Length = 461

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 35/166 (21%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M +  YD+ VIGGG  G  AA VAA LG   A+                     + +   
Sbjct: 1   MSSYDYDLFVIGGGSGGVRAARVAASLGKKVAI--------------------AEEYRYG 40

Query: 61  EIDALDGLMGRVADAAGIQF-RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL-- 117
               + G + +       QF        G      R+  D +    A   EI   E L  
Sbjct: 41  GTCVIRGCVPKKLFVYASQFHEHFEDAAGFGWTVGRSSFDWKKLVAAKDAEIARLEGLYK 100

Query: 118 --------DVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                   ++++        + + +  +       +   T+V+ TG
Sbjct: 101 KGLAGANAEILETRAE--LVDAHTVRLVKT--GQTVTAKTIVIATG 142


>gi|85374056|ref|YP_458118.1| pyruvate dehydrogenase complex, E3 component,
          lipoamidedehydrogenase, putative [Erythrobacter
          litoralis HTCC2594]
 gi|84787139|gb|ABC63321.1| pyruvate dehydrogenase complex, E3 component,
          lipoamidedehydrogenase, putative [Erythrobacter
          litoralis HTCC2594]
          Length = 470

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDVIV+G G  G  AA   A+LG  TA++
Sbjct: 1  MAENYDVIVLGSGPGGYVAAIRCAQLGLKTAIV 33


>gi|89068141|ref|ZP_01155558.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Oceanicola granulosus HTCC2516]
 gi|89046380|gb|EAR52437.1| 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide
          dehydrogenase [Oceanicola granulosus HTCC2516]
          Length = 461

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           YDVIVIG G  G   A   A+LG  TA +  +  T+G    ++ C P+   L    ++ 
Sbjct: 3  DYDVIVIGSGPGGYVCAIRCAQLGLKTACVEAR-DTLGGTCLNIGCIPSKALLHATEMLH 61

Query: 61 EID---ALDGLMGR 71
          E +   A  GL G+
Sbjct: 62 EAEHNFAEMGLKGK 75


>gi|254299811|ref|ZP_04967259.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 406e]
 gi|157809801|gb|EDO86971.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 406e]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNAE 423


>gi|53721586|ref|YP_110571.1| NADH:flavin oxidoreductase / NADH oxidase family protein
           [Burkholderia pseudomallei K96243]
 gi|134284185|ref|ZP_01770878.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 305]
 gi|167897303|ref|ZP_02484705.1| NADH:flavin oxidoreductase / NADH oxidase family protein
           [Burkholderia pseudomallei 7894]
 gi|167921882|ref|ZP_02508973.1| NADH:flavin oxidoreductase / NADH oxidase family protein
           [Burkholderia pseudomallei BCC215]
 gi|217425488|ref|ZP_03456981.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 576]
 gi|254182307|ref|ZP_04888902.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1655]
 gi|254187370|ref|ZP_04893883.1| NADH:flavin oxidoreductase/nadh oxidase family protein
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254198741|ref|ZP_04905161.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei S13]
 gi|52212000|emb|CAH38007.1| NADH:flavin oxidoreductase / NADH oxidase family protein
           [Burkholderia pseudomallei K96243]
 gi|134244503|gb|EBA44608.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 305]
 gi|157935051|gb|EDO90721.1| NADH:flavin oxidoreductase/nadh oxidase family protein
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169655480|gb|EDS88173.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei S13]
 gi|184212843|gb|EDU09886.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1655]
 gi|217391451|gb|EEC31480.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 576]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNAE 423


>gi|319941447|ref|ZP_08015775.1| succinate dehydrogenase/fumarate reductase [Sutterella
          wadsworthensis 3_1_45B]
 gi|319805067|gb|EFW01897.1| succinate dehydrogenase/fumarate reductase [Sutterella
          wadsworthensis 3_1_45B]
          Length = 661

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKGHLVRE 61
          DV+VIGGG AG   A  A + G  + +++        S         ++G + KG    E
Sbjct: 7  DVLVIGGGLAGLRMAVAAKRRGHDSIVLSLVPPKRSHSKAAQGGMQASLGNVIKGLGDNE 66

Query: 62 IDALDGLMGRVADAAGIQ 79
                 + R +D    Q
Sbjct: 67 DVHFGDTV-RGSDWGADQ 83


>gi|313680398|ref|YP_004058137.1| succinate dehydrogenase subunit a [Oceanithermus profundus DSM
          14977]
 gi|313153113|gb|ADR36964.1| succinate dehydrogenase subunit A [Oceanithermus profundus DSM
          14977]
          Length = 579

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +   +DV+VIG G +G  AA  AA+ GA+  +++
Sbjct: 1  MAHVHDVLVIGAGGSGLTAALFAARHGANVGVVS 34


>gi|227485527|ref|ZP_03915843.1| succinate dehydrogenase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236526|gb|EEI86541.1| succinate dehydrogenase [Anaerococcus lactolyticus ATCC 51172]
          Length = 640

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           +YDV+V GGG +G  +A  AA  GA  ALI   
Sbjct: 159 NYDVVVAGGGFSGIVSAYRAASNGAKVALIEKN 191


>gi|224139966|ref|XP_002323362.1| predicted protein [Populus trichocarpa]
 gi|222867992|gb|EEF05123.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS------------MSCNPAIGG 52
           +YD IVIG G  G  AA   A  GA   ++       GS            +  +   G 
Sbjct: 95  NYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGYYERDGFTFDVGSSVMFGF 154

Query: 53  LGKGHL---VREIDALDGLMGRVADAAGIQFRVLN 84
             KG+L    + + A+   M  + D   + F + N
Sbjct: 155 SDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPN 189


>gi|254392407|ref|ZP_05007589.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Streptomyces clavuligerus
          ATCC 27064]
 gi|326440507|ref|ZP_08215241.1| putative FAD-binding dehydrogenase [Streptomyces clavuligerus
          ATCC 27064]
 gi|197706076|gb|EDY51888.1| fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Streptomyces clavuligerus
          ATCC 27064]
          Length = 551

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DVIVIG G AG  A A  A  G    L+  +  
Sbjct: 6  DVIVIGAGLAGLVATAELAGAGRKVILLDQEPE 38


>gi|188994690|ref|YP_001928942.1| dihydrolipoamide dehydrogenase [Porphyromonas gingivalis ATCC
          33277]
 gi|188594370|dbj|BAG33345.1| dihydrolipoamide dehydrogenase [Porphyromonas gingivalis ATCC
          33277]
          Length = 449

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          YD+ +IGGG AG  AA  AAK G  T LI   
Sbjct: 3  YDLAIIGGGPAGYTAAERAAKGGLKTLLIEKN 34


>gi|241113356|ref|YP_002973191.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240861564|gb|ACS59230.1| FAD dependent oxidoreductase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 424

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           YDV +IG G  G  AA   AK G    ++  +    G+   N      G  H      +
Sbjct: 25 HYDVAIIGAGFTGLAAARQLAKAGVKVVVLEAERVGWGASGRNGGHLNNGLAHSFLSAKS 84

Query: 65 LDGL 68
            G+
Sbjct: 85 ALGV 88


>gi|154488664|ref|ZP_02029513.1| hypothetical protein BIFADO_01971 [Bifidobacterium adolescentis
          L2-32]
 gi|154082801|gb|EDN81846.1| hypothetical protein BIFADO_01971 [Bifidobacterium adolescentis
          L2-32]
          Length = 501

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+ + +D+ +IG G  G   A  AA+LG S ALI
Sbjct: 9  MVQQHFDIAIIGAGPGGYSTALRAAELGKSVALI 42


>gi|119025963|ref|YP_909808.1| dihydrolipoamide dehydrogenase [Bifidobacterium adolescentis ATCC
          15703]
 gi|118765547|dbj|BAF39726.1| dihydrolipoamide dehydrogenase [Bifidobacterium adolescentis ATCC
          15703]
          Length = 507

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+ + +D+ +IG G  G   A  AA+LG S ALI
Sbjct: 15 MVQQHFDIAIIGAGPGGYSTALRAAELGKSVALI 48


>gi|84685319|ref|ZP_01013217.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84666476|gb|EAQ12948.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITH 36
           V+VIGGG+ G EAAAVAAK G    ++  
Sbjct: 147 VLVIGGGYIGLEAAAVAAKKGMQVTIVEM 175


>gi|324029088|gb|ADY16696.1| TqaH [Penicillium aethiopicum]
          Length = 463

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 25/165 (15%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+++G G AG  AA    + G S  +       +  +  +   G +   +  + +     
Sbjct: 27  VVIVGVGLAGITAAIECHRKGHSVIV----LEKVSELKHDAGDGIMIAPNASKVMRQWGD 82

Query: 68  LMGRV-----ADAAGIQFRVLN---------VKKGPAVRGPRTQADRELYRLAMQREILS 113
            +         D+  +     N           KG  +   R +    L+  A  R    
Sbjct: 83  ELLAEIVLNRCDSTHVDMMDHNDNLIARQELPGKGEGIVTNRGKLVCLLFAHAKNRL--- 139

Query: 114 QENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157
              +D+  G  V  +  E    + + + D   I    VV   G  
Sbjct: 140 --GIDIRLGSRVTDYWEENGQ-AGVTVDDGERISGDCVVCADGVH 181


>gi|320592275|gb|EFX04714.1| flavin-binding monooxygenase [Grosmannia clavigera kw1407]
          Length = 506

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 1  MINRSYDVIVIGGGHAGCEAAA 22
          M ++ +DVI++G G +G  AA 
Sbjct: 1  MADKDFDVIIVGAGLSGINAAY 22


>gi|283777884|ref|YP_003368639.1| amine oxidase [Pirellula staleyi DSM 6068]
 gi|283436337|gb|ADB14779.1| amine oxidase [Pirellula staleyi DSM 6068]
          Length = 549

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + RS+D IVIGGGH G   AA  AK G    ++
Sbjct: 9  LARSFDCIVIGGGHNGLVTAAYLAKAGKKVCVL 41


>gi|282859149|ref|ZP_06268275.1| thiazole biosynthesis enzyme [Prevotella bivia JCVIHMP010]
 gi|282588067|gb|EFB93246.1| thiazole biosynthesis enzyme [Prevotella bivia JCVIHMP010]
          Length = 257

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV ++GGG +G  AA   AK G   AL   K S
Sbjct: 25 DVAIVGGGPSGIVAAYYMAKAGLKVALFDRKLS 57


>gi|239945029|ref|ZP_04696966.1| putative oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|239991491|ref|ZP_04712155.1| putative oxidoreductase [Streptomyces roseosporus NRRL 11379]
 gi|291448487|ref|ZP_06587877.1| monooxygenase [Streptomyces roseosporus NRRL 15998]
 gi|291351434|gb|EFE78338.1| monooxygenase [Streptomyces roseosporus NRRL 15998]
          Length = 397

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YDVIV+G   AG   A + A+ G    ++
Sbjct: 1  MSESRYDVIVVGARCAGSPTAMLLARKGYRVLVV 34


>gi|226289661|gb|EEH45145.1| kynurenine 3-monooxygenase [Paracoccidioides brasiliensis Pb18]
          Length = 516

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--------SCNPAIGG 52
           M      V+++G G  G  AA  AA+ G    L   +               S N A+  
Sbjct: 1   MAETKQKVVIVGAGPVGSLAALYAAERGDIVELYELRGDLRNPSTTPLNFTKSINVALAE 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ-----------ADRE 101
            G  + +R I     +   + +   +  R+++ K         +Q            DR 
Sbjct: 61  RGI-NTMRRIKRSGFIDAILKETVPMHARMVHRKNQLGKLSQESQPYDVHGRYNNAMDRG 119

Query: 102 LYRLAMQREILSQENLDVI 120
                +  E+ +  N+ + 
Sbjct: 120 RLNEILLDELENTPNVKIF 138


>gi|239815012|ref|YP_002943922.1| FAD dependent oxidoreductase [Variovorax paradoxus S110]
 gi|239801589|gb|ACS18656.1| FAD dependent oxidoreductase [Variovorax paradoxus S110]
          Length = 437

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV V+GGG AG  AA   A  G +  L+  +    G+   N
Sbjct: 38 DVCVVGGGLAGLSAALELAMRGYAVVLLEAQRVGWGASGRN 78


>gi|218674664|ref|ZP_03524333.1| dihydrolipoamide dehydrogenase [Rhizobium etli GR56]
          Length = 422

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDVI+IG G  G  AA  AA+LG  TA++
Sbjct: 2  SYDVIIIGSGPGGYVAAIRAAQLGLKTAIV 31


>gi|53804421|ref|YP_113951.1| oxidoreductase, FAD-binding [Methylococcus capsulatus str. Bath]
 gi|53758182|gb|AAU92473.1| putative oxidoreductase, FAD-binding [Methylococcus capsulatus
          str. Bath]
          Length = 455

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AG   AA+ A+ G  T ++
Sbjct: 30 DVLVIGGGPAGSTVAALLAERGYRTVML 57


>gi|78223960|ref|YP_385707.1| dihydrolipoamide dehydrogenase [Geobacter metallireducens GS-15]
 gi|78195215|gb|ABB32982.1| dihydrolipoamide dehydrogenase [Geobacter metallireducens GS-15]
          Length = 477

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD+IVIG G  G  AA  AA+LG S A++
Sbjct: 1  MSEELYDLIVIGAGPGGYVAAIRAAQLGMSVAVV 34


>gi|47095954|ref|ZP_00233557.1| 2-oxoisovalerate dehydrogenase E3 component, dihydrolipoamide
          dehydrogenase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898464|ref|ZP_05258388.1| dihydrolipoamide dehydrogenase [Listeria monocytogenes J0161]
 gi|254912045|ref|ZP_05262057.1| 2-oxoisovalerate dehydrogenase E3 [Listeria monocytogenes J2818]
 gi|254936372|ref|ZP_05268069.1| 2-oxoisovalerate dehydrogenase E3 component [Listeria
          monocytogenes F6900]
 gi|47015700|gb|EAL06630.1| 2-oxoisovalerate dehydrogenase E3 component, dihydrolipoamide
          dehydrogenase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608963|gb|EEW21571.1| 2-oxoisovalerate dehydrogenase E3 component [Listeria
          monocytogenes F6900]
 gi|293590011|gb|EFF98345.1| 2-oxoisovalerate dehydrogenase E3 [Listeria monocytogenes J2818]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YDV+++GGG  G  AA  AAK G   A++
Sbjct: 1  MAKEYDVVILGGGTGGYVAAIQAAKNGQKVAVV 33


>gi|306817843|ref|ZP_07451582.1| CoA-disulfide reductase [Mobiluncus mulieris ATCC 35239]
 gi|304649322|gb|EFM46608.1| CoA-disulfide reductase [Mobiluncus mulieris ATCC 35239]
          Length = 681

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI-DALDG 67
           +VIGGG  G EAA   A+ G  T ++       G+    P         L REI + + G
Sbjct: 177 VVIGGGFIGIEAAEALAQRGLQTTIVE------GAAHVMP--------PLDREIANMVTG 222

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            +G +        RV ++  G A  G R + 
Sbjct: 223 ALGSLGIQVFADTRVESILPGAAG-GGRGEV 252


>gi|297623690|ref|YP_003705124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Truepera radiovictrix DSM 17093]
 gi|297164870|gb|ADI14581.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Truepera radiovictrix DSM 17093]
          Length = 460

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 51/165 (30%), Gaps = 29/165 (17%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-----TSTIGSMSCNPAIGGLGK 55
           M +  +DVI+IG G A    A   A+ G   AL   K         G       I     
Sbjct: 1   MADVDFDVIIIGAGQASVPLARALAEAGREVALAERKHLGGSCVNFGCTPTKAVISSAKV 60

Query: 56  GHLVREIDALDGLMGRV-ADAAGIQFR---VLNVKKGPAVRGPRTQADRELYRLAMQREI 111
            HL R        +G V  D   +  R   +L   +    +  R+  D      A  R I
Sbjct: 61  AHLARRAADYGVHVGAVEVDLEAVLARAESILQSSR----QSLRSTLD-----EAGVRLI 111

Query: 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                L    GE  G                  +R   VVL TGT
Sbjct: 112 EGSARLAGRHGEAFGVQVG-----------GETLRAGAVVLNTGT 145


>gi|284931983|gb|ADC31800.1| Fdr [Sphingomonas sp. XLDN2-5]
          Length = 414

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
          M +  YDV+++G GH G + A    + G          + IG+    P
Sbjct: 1  MTDTHYDVVIVGAGHGGAQTAIALRQNG-----FAGTIAIIGAEPDLP 43


>gi|294811747|ref|ZP_06770390.1| Fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Streptomyces clavuligerus
          ATCC 27064]
 gi|294324346|gb|EFG05989.1| Fumarate reductase/succinate dehydrogenase flavoprotein
          domain-containing protein [Streptomyces clavuligerus
          ATCC 27064]
          Length = 554

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DVIVIG G AG  A A  A  G    L+  +  
Sbjct: 9  DVIVIGAGLAGLVATAELAGAGRKVILLDQEPE 41


>gi|291543739|emb|CBL16848.1| Thioredoxin reductase [Ruminococcus sp. 18P13]
          Length = 301

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          Y++++ GGG AG  AA  AA+ G ST ++  +
Sbjct: 2  YEILIAGGGIAGLTAALYAARAGCSTLVLEQQ 33


>gi|282896310|ref|ZP_06304332.1| FAD dependent oxidoreductase [Raphidiopsis brookii D9]
 gi|281198806|gb|EFA73685.1| FAD dependent oxidoreductase [Raphidiopsis brookii D9]
          Length = 567

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1  MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          M ++  YDVI+IG GH G   AA   K G S  L+  ++   G+ +    I     G
Sbjct: 1  MNHKDEYDVIIIGAGHNGLVCAAYLLKAGYSVLLLEKRSVPGGAATTEECIPEQAPG 57


>gi|264680825|ref|YP_003280735.1| precorrin 3B synthase CobZ [Comamonas testosteroni CNB-2]
 gi|262211341|gb|ACY35439.1| precorrin 3B synthase CobZ [Comamonas testosteroni CNB-2]
          Length = 483

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 70/221 (31%), Gaps = 46/221 (20%)

Query: 1   MINRSYD--VIVIGGGHAGCEAAAVAAKLGASTALI-----------THKTSTIGSMSCN 47
           M   ++D  V+VIGGG+A   AA +A + GA   L+           +  T  +  M   
Sbjct: 1   MKTEAFDTDVLVIGGGNAALCAALMAREAGARVLLLESAPREWRGGNSGHTRNLRCMHDA 60

Query: 48  PA-------------------IGGLGKGHLVREIDALDGLMGRVADAAGIQFRV-----L 83
           P                     GG+   HL R +              G+ F+      L
Sbjct: 61  PQDVLVEAYPEEEYWQDLLKVTGGITNEHLARMVIRASSTCRNWMRRHGVHFQPPLSGAL 120

Query: 84  NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNI--ISSIVMQ 140
           +V +  A      +A    Y  + ++       +++  +  V     E      + +  +
Sbjct: 121 HVARTNAFFMGGGKALVNAYFRSAEKL-----GVEIRYESPVDKLEIENGRFQAAWVKTK 175

Query: 141 DNS-MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           D S  I   + VL  G F      + +      R      N
Sbjct: 176 DGSQRITAKSCVLAAGGFESNREWLREAWGQNERGEWPADN 216


>gi|302894063|ref|XP_003045912.1| hypothetical protein NECHADRAFT_24767 [Nectria haematococca mpVI
          77-13-4]
 gi|256726839|gb|EEU40199.1| hypothetical protein NECHADRAFT_24767 [Nectria haematococca mpVI
          77-13-4]
          Length = 444

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG +G  AA    ++G   ALI
Sbjct: 19 DVVVIGGGSSGTFAAVKLRRMGKKVALI 46


>gi|256375301|ref|YP_003098961.1| FAD dependent oxidoreductase [Actinosynnema mirum DSM 43827]
 gi|255919604|gb|ACU35115.1| FAD dependent oxidoreductase [Actinosynnema mirum DSM 43827]
          Length = 516

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          ++  YD +V+GGGH G  AAA  A  G S  ++             P +GG   G
Sbjct: 1  MDGLYDAVVVGGGHNGLVAAAYLAGAGRSVLVLE----------KLPQVGGAAVG 45


>gi|254517783|ref|ZP_05129839.1| enoate reductase [Clostridium sp. 7_2_43FAA]
 gi|226911532|gb|EEH96733.1| enoate reductase [Clostridium sp. 7_2_43FAA]
          Length = 623

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTAL 33
           V+++GGG  G EAA VAAK G    L
Sbjct: 364 VLIVGGGPGGLEAAIVAAKRGHKVTL 389


>gi|255562210|ref|XP_002522113.1| protein binding protein, putative [Ricinus communis]
 gi|223538712|gb|EEF40313.1| protein binding protein, putative [Ricinus communis]
          Length = 956

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 51/194 (26%)

Query: 430 RAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS--LVLTSKN 487
           +A  R   R D  D+ L  +G       + R K   +  +     R  L+S   +  S  
Sbjct: 504 KAVERERDRRDIFDSFLQELG------DKERAKAQEERKRNIMEYRQFLESCDFIKASTQ 557

Query: 488 LSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTG 547
                   + D +  +  E +   +     L       R       E+ +I+        
Sbjct: 558 WRKVQDRLEAD-ERCSRLEKIDRLEIFQDYL-------RDLEKEEEEQRKIQ-------K 602

Query: 548 RQMIEAKEIKFEEKRLIPK---------------DFDYSSLPALSNELKEKLSILKPFNL 592
            +  +A+    +E R + +               D+ Y  +  L            P  L
Sbjct: 603 EEQRKAERKNRDEFRKLLEEHVAAGTMTAKTHWRDY-YLKVKDL------------PAYL 649

Query: 593 LQASKIEGMTPAAL 606
             AS   G TP  L
Sbjct: 650 AVASNTSGSTPKDL 663


>gi|238497552|ref|XP_002380011.1| thioredoxin reductase GliT-like, putative [Aspergillus flavus
          NRRL3357]
 gi|220693285|gb|EED49630.1| thioredoxin reductase GliT-like, putative [Aspergillus flavus
          NRRL3357]
          Length = 334

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          DV++IGGG AG  AA    +      L       +     N A        L+  
Sbjct: 10 DVLIIGGGPAGSNAAWELGQAHHRVILFNASIDRLRDPDVNTASTRPALDLLLHS 64


>gi|182415943|ref|YP_001821009.1| carotene 7,8-desaturase [Opitutus terrae PB90-1]
 gi|177843157|gb|ACB77409.1| Carotene 7,8-desaturase [Opitutus terrae PB90-1]
          Length = 451

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DVI++G G AG   A   A+ G +  L+
Sbjct: 13 DVIIVGAGLAGLSCAFELAERGQAVLLL 40


>gi|171912293|ref|ZP_02927763.1| Sialate O-acetylesterase [Verrucomicrobium spinosum DSM 4136]
          Length = 2059

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)

Query: 4    RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            +SYD++VIGG   G   A  AA+ G +  L+ H T  +G    + A G            
Sbjct: 1457 KSYDLVVIGGTPGGIACAVRAAREGLNVLLVNH-TQHLGGFVTSGAGGWEA--------- 1506

Query: 64   ALDG----LMGRVADAAGIQFRVLNVKKGPAVRGP-------RTQADRELYRLAMQREIL 112
              DG    L   + + A   +R  N  +G             R   DR      +   + 
Sbjct: 1507 PYDGQRAPLYAEMLEGAANYYRK-NYGEGSPQHVASMPSKTSRAHIDRPKVEPRIAEMLF 1565

Query: 113  S-----QENLDVIQGE-VAGFNTEKNIISSIVMQ---DNSMIRCSTVVLTTGTFLRGVIH 163
            +     +++L V+ G  V     +  +I S+ ++    ++ I     V   G +   ++ 
Sbjct: 1566 NKMVGSEKSLTVLLGHVVTKAERDGALIKSVTLKPMHGDNTITVIGKVFADGMYEGDLMA 1625

Query: 164  IGKLKIPAGR 173
               +K   GR
Sbjct: 1626 AAGVKTQIGR 1635


>gi|169334021|ref|ZP_02861214.1| hypothetical protein ANASTE_00414 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258738|gb|EDS72704.1| hypothetical protein ANASTE_00414 [Anaerofustis stercorihominis DSM
           17244]
          Length = 679

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVR 60
            YD+ VIG G  G   A  AA+LGA   +       IG +     C P    +    ++R
Sbjct: 234 DYDLAVIGAGPGGYVCAIRAAQLGAKVVIFE--KEHIGGVCLNKGCIPTKAFVKNAEVLR 291

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           E+    G MG   ++    +  +  +K   V                   +L +  ++VI
Sbjct: 292 EVKHA-GEMGIEVESFKTNWSKVIERKNGVVSKLTGGVS----------GLLKRHKVEVI 340

Query: 121 QGEVAGFNTEKNIISS 136
            GE    NTE  I+  
Sbjct: 341 MGEAV-INTEHEILVG 355


>gi|167827218|ref|ZP_02458689.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           9]
 gi|226195119|ref|ZP_03790710.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei Pakistan
           9]
 gi|225932924|gb|EEH28920.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei Pakistan
           9]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNAE 423


>gi|145633739|ref|ZP_01789464.1| sn-glycerol-3-phosphate dehydrogenase subunit C [Haemophilus
           influenzae 3655]
 gi|145635539|ref|ZP_01791238.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae PittAA]
 gi|229845519|ref|ZP_04465647.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae 6P18H1]
 gi|144985398|gb|EDJ92225.1| sn-glycerol-3-phosphate dehydrogenase subunit C [Haemophilus
           influenzae 3655]
 gi|145267202|gb|EDK07207.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae PittAA]
 gi|229811535|gb|EEP47236.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae 6P18H1]
          Length = 432

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQCGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|145629622|ref|ZP_01785419.1| sn-glycerol-3-phosphate dehydrogenase subunit A [Haemophilus
           influenzae 22.1-21]
 gi|144978133|gb|EDJ87906.1| sn-glycerol-3-phosphate dehydrogenase subunit A [Haemophilus
           influenzae 22.1-21]
          Length = 432

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQCGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|86371808|gb|ABB89042.1| glutathione reductase [Vigna unguiculata]
          Length = 499

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           N  +D+ +IG G  G  AA  ++  GA   +     + I     +  IGG+G     +G 
Sbjct: 22  NFDFDLFIIGAGSGGVRAARFSSNYGAKVGICELPFNPIS----SETIGGVGGTCVIRGC 77

Query: 58  LVREIDALD-GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           + ++I        G + DA    + +         +  + + D       + + +LS   
Sbjct: 78  VPKKILVYGASYGGELEDARNYGWELNEKVDFNWKKLLQKKTDEINRLNGIYKRLLSNAG 137

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           + + +GE  G     N +  +   D +        +++ TG+
Sbjct: 138 VKLFEGE--GKIVGPNEVE-VTQLDGTKLSYTAKHILIATGS 176


>gi|68249263|ref|YP_248375.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae 86-028NP]
 gi|81336333|sp|Q4QMN2|GLPB_HAEI8 RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase subunit
           B; Short=Anaerobic G-3-P dehydrogenase subunit B;
           Short=Anaerobic G3Pdhase B
 gi|68057462|gb|AAX87715.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Haemophilus
           influenzae 86-028NP]
          Length = 432

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           ++DV +IGGG AG        + G    +I +  + I   S +  +          E  A
Sbjct: 2   NFDVAIIGGGLAGLTCGIALQQCGKRCVIINNGQAAIDFASGSLDLLSRMPSTTYGENRA 61

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           ++ L   +              + PA       A++ L +      + ++ NLD+I    
Sbjct: 62  VENLKENITAL---------RNELPAHPYSLLGAEKVLAKAQDFERLANELNLDLI---- 108

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                    ++ +     + +  ++V    G 
Sbjct: 109 GSTEKNHWRVTGLGSLRGAWLSPNSVPTVQGN 140


>gi|45658317|ref|YP_002403.1| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|45601559|gb|AAS71040.1| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 467

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV+VIG G  G   A   A+LG  TA+I
Sbjct: 1  MSAEFDVVVIGAGPGGYVCAIRCAQLGFKTAII 33


>gi|24213923|ref|NP_711404.1| dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Lai str. 56601]
 gi|24194777|gb|AAN48422.1|AE011304_2 dihydrolipoamide dehydrogenase [Leptospira interrogans serovar
          Lai str. 56601]
          Length = 467

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DV+VIG G  G   A   A+LG  TA+I
Sbjct: 1  MSAEFDVVVIGAGPGGYVCAIRCAQLGFKTAII 33


>gi|169768266|ref|XP_001818603.1| thioredoxin reductase [Aspergillus oryzae RIB40]
 gi|83766461|dbj|BAE56601.1| unnamed protein product [Aspergillus oryzae]
          Length = 334

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          DV++IGGG AG  AA    +      L       +     N A        L+  
Sbjct: 10 DVLIIGGGPAGSNAAWELGQAHHRVILFNASIDRLRDPDVNTASTRPALDLLLHS 64


>gi|56477756|ref|YP_159345.1| ubiquinone biosynthesis hydroxylase family protein [Aromatoleum
           aromaticum EbN1]
 gi|56313799|emb|CAI08444.1| Flavoprotein monooxygenase (probable aromatic-ring hydroxylase)
           [Aromatoleum aromaticum EbN1]
          Length = 387

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 24/167 (14%)

Query: 5   SYDVIVIGGGHAGCEAAAV----AAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
            +D+I+IGGG AG  A+      A++L  +           G  S   A+       L R
Sbjct: 2   DFDLIIIGGGLAG--ASLAVALRASRLRIAVVETHLPADVPGWDSRIYAVSPENADFL-R 58

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA------------DRELYRLAMQ 108
           EI A      R  DA+ I        +G A       A            +       + 
Sbjct: 59  EIGAW-----RHLDASRINPVHAMSIRGDAGGSLEFSAYESGLPELAWIVESGRLHRELW 113

Query: 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             +  Q N+ ++ G      ++     ++ + D        VV   G
Sbjct: 114 ETMRRQHNVTLLCGISPVRFSQGAASVTVGLSDGRQANARLVVGADG 160


>gi|83944432|ref|ZP_00956886.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Sulfitobacter sp. EE-36]
 gi|83844755|gb|EAP82638.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Sulfitobacter sp. EE-36]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGSGPGGYVSAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EID---ALDGLMGR--VADAAGIQFRVLNV 85
          E +   A  GL G+    D A +Q    N 
Sbjct: 62 EAEHNFADMGLKGKSPSVDWAQMQTYKQNT 91


>gi|83953473|ref|ZP_00962195.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Sulfitobacter sp.
          NAS-14.1]
 gi|83842441|gb|EAP81609.1| 2-oxoglutarate dehydrogenase, E3 component,
          dihydrolipoamidedehydrogenase [Sulfitobacter sp.
          NAS-14.1]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          SYDVI+IG G  G  +A   A+LG  TA +  +  T+G    ++ C P+   L   H++ 
Sbjct: 3  SYDVIIIGSGPGGYVSAIRCAQLGLKTACVEGR-ETLGGTCLNVGCIPSKALLHATHMLH 61

Query: 61 EID---ALDGLMGR--VADAAGIQFRVLNV 85
          E +   A  GL G+    D A +Q    N 
Sbjct: 62 EAEHNFADMGLKGKSPSVDWAQMQTYKQNT 91


>gi|145219867|ref|YP_001130576.1| dihydrolipoamide dehydrogenase [Prosthecochloris vibrioformis DSM
           265]
 gi|145206031|gb|ABP37074.1| dihydrolipoamide dehydrogenase [Chlorobium phaeovibrioides DSM 265]
          Length = 466

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 36/170 (21%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+ +IG G  G EAA + A+ G    +                 G +    L+R  + 
Sbjct: 11  QYDLALIGSGPGGSEAAMLGARAGLRVCI----IEKGAPGGVCVNWGCIPTKALLRSAEM 66

Query: 65  LDGLMG------RVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD 118
            D L          +D A      +   +  A +  +  A            +L +  ++
Sbjct: 67  FDSLKKGPSFGVSASDGAFDLAAAVKRSRTVAGKMSKGVA-----------FMLRKAGVE 115

Query: 119 VIQGEV-------AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
            +QGE             E + I S+             ++ TG   R +
Sbjct: 116 FLQGEAVFRSPTEVDIVREGSRIGSV--------HAKHFIIATGGRPRSI 157


>gi|53717123|ref|YP_105246.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei ATCC 23344]
 gi|67640445|ref|ZP_00439251.1| probable N-methylproline demethylase (Stachydrineutilization
           protein StcD) [Burkholderia mallei GB8 horse 4]
 gi|76818900|ref|YP_337261.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1710b]
 gi|121597276|ref|YP_990312.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei SAVP1]
 gi|124382065|ref|YP_001024811.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei NCTC 10229]
 gi|126442793|ref|YP_001061830.1| oxidoreductase [Burkholderia pseudomallei 668]
 gi|126445991|ref|YP_001079152.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei NCTC 10247]
 gi|126456967|ref|YP_001074779.1| FAD/FMN-binding oxidoreductase [Burkholderia pseudomallei 1106a]
 gi|167002650|ref|ZP_02268440.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei PRL-20]
 gi|167722683|ref|ZP_02405919.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           DM98]
 gi|167818843|ref|ZP_02450523.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           91]
 gi|167848709|ref|ZP_02474217.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           B7210]
 gi|167905664|ref|ZP_02492869.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167913969|ref|ZP_02501060.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           112]
 gi|237508511|ref|ZP_04521226.1| probable N-methylproline demethylase (Stachydrineutilization
           protein StcD) [Burkholderia pseudomallei MSHR346]
 gi|242313257|ref|ZP_04812274.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1106b]
 gi|254175862|ref|ZP_04882521.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei ATCC 10399]
 gi|254203209|ref|ZP_04909571.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei FMH]
 gi|254208544|ref|ZP_04914893.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei JHU]
 gi|254265331|ref|ZP_04956196.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1710a]
 gi|254355818|ref|ZP_04972097.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei 2002721280]
 gi|52423093|gb|AAU46663.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei ATCC 23344]
 gi|76583373|gb|ABA52847.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1710b]
 gi|121225074|gb|ABM48605.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei SAVP1]
 gi|124290085|gb|ABM99354.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126222284|gb|ABN85789.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia pseudomallei
           668]
 gi|126230735|gb|ABN94148.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1106a]
 gi|126238845|gb|ABO01957.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia mallei NCTC
           10247]
 gi|147746254|gb|EDK53332.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei FMH]
 gi|147751231|gb|EDK58299.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei JHU]
 gi|148024789|gb|EDK82972.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei 2002721280]
 gi|160696905|gb|EDP86875.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei ATCC 10399]
 gi|235000716|gb|EEP50140.1| probable N-methylproline demethylase (Stachydrineutilization
           protein StcD) [Burkholderia pseudomallei MSHR346]
 gi|238521161|gb|EEP84615.1| probable N-methylproline demethylase (Stachydrineutilization
           protein StcD) [Burkholderia mallei GB8 horse 4]
 gi|242136496|gb|EES22899.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1106b]
 gi|243061695|gb|EES43881.1| oxidoreductase, FAD/FMN-binding [Burkholderia mallei PRL-20]
 gi|254216333|gb|EET05718.1| oxidoreductase, FAD/FMN-binding [Burkholderia pseudomallei 1710a]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L      
Sbjct: 392 VVVVGAGPAGLEAARVARSRGHDVVLFEKNAE 423


>gi|330982808|gb|EGH80911.1| hypothetical protein PSYAP_30458 [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 301

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|330972669|gb|EGH72735.1| hypothetical protein PSYAR_19476 [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|330945135|gb|EGH46851.1| hypothetical protein PSYPI_32973 [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 254

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|330900812|gb|EGH32231.1| hypothetical protein PSYJA_26040 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|330873856|gb|EGH08005.1| hypothetical protein PSYMP_05184 [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|326330830|ref|ZP_08197131.1| putative monooxygenase [Nocardioidaceae bacterium Broad-1]
 gi|325951360|gb|EGD43399.1| putative monooxygenase [Nocardioidaceae bacterium Broad-1]
          Length = 496

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          +++ ++V+VIG G +G  AA    + G    +I  K  T G         G   
Sbjct: 1  MSKHHEVVVIGAGISGIAAAIKLREAGVEDVVILEKADTYGGTWRANTYPGCAC 54


>gi|329943271|ref|ZP_08292045.1| dihydrolipoyl dehydrogenase [Chlamydophila psittaci Cal10]
 gi|332287849|ref|YP_004422750.1| dihydrolipoyl dehydrogenase [Chlamydophila psittaci 6BC]
 gi|313848421|emb|CBY17425.1| dihydrolipoamide dehydrogenase [Chlamydophila psittaci RD1]
 gi|325506808|gb|ADZ18446.1| dihydrolipoyl dehydrogenase [Chlamydophila psittaci 6BC]
 gi|328814818|gb|EGF84808.1| dihydrolipoyl dehydrogenase [Chlamydophila psittaci Cal10]
 gi|328915111|gb|AEB55944.1| dihydrolipoamide dehydrogenase [Chlamydophila psittaci 6BC]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +D +VIG G  G  AA  AA+ G  TALI
Sbjct: 1  MSTDFDCVVIGAGPGGYVAAITAAQQGLKTALI 33


>gi|302189856|ref|ZP_07266529.1| hypothetical protein Psyrps6_26071 [Pseudomonas syringae pv.
          syringae 642]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|301384382|ref|ZP_07232800.1| hypothetical protein PsyrptM_17175 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062326|ref|ZP_07253867.1| hypothetical protein PsyrptK_20241 [Pseudomonas syringae pv.
          tomato K40]
 gi|302132330|ref|ZP_07258320.1| hypothetical protein PsyrptN_13103 [Pseudomonas syringae pv.
          tomato NCPPB 1108]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|297155063|gb|ADI04775.1| soluble pyridine nucleotide transhydrogenase [Streptomyces
          bingchenggensis BCW-1]
          Length = 467

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
           +D++VIG G  G +AA  AAKLG   A++  +   +G +S +    G      +RE   
Sbjct: 3  DFDMLVIGSGPGGQKAAIAAAKLGRRVAVVD-RPDMVGGVSIHT---GTVPSKTLREAVL 58

Query: 65 LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ 97
             L G        Q   L  +   A    RTQ
Sbjct: 59 Y--LTGLTQRDLYGQSYRLKDEITVADLTARTQ 89


>gi|294140057|ref|YP_003556035.1| 2,4-dienoyl-CoA reductase [Shewanella violacea DSS12]
 gi|293326526|dbj|BAJ01257.1| 2,4-dienoyl-CoA reductase, putative [Shewanella violacea DSS12]
          Length = 677

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 17/38 (44%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           VIGGG  G EAA   A+ G S  LI      IG     
Sbjct: 535 VIGGGLVGSEAALWMAQRGKSVTLIEASDDLIGGPHKT 572


>gi|289676288|ref|ZP_06497178.1| hypothetical protein PsyrpsF_23632 [Pseudomonas syringae pv.
          syringae FF5]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|304317890|ref|YP_003853035.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779392|gb|ADL69951.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 605

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
               +V VIGGG AG  AA   A+ G +  L 
Sbjct: 348 KEKLNVAVIGGGPAGMSAAIYLARKGHNVELF 379


>gi|237798216|ref|ZP_04586677.1| hypothetical protein POR16_05179 [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331021068|gb|EGI01125.1| hypothetical protein POR16_05179 [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|291296696|ref|YP_003508094.1| dihydrolipoamide dehydrogenase [Meiothermus ruber DSM 1279]
 gi|290471655|gb|ADD29074.1| dihydrolipoamide dehydrogenase [Meiothermus ruber DSM 1279]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          ++  YDVIVIG G  G  AA  AA+LG    
Sbjct: 1  MSTIYDVIVIGTGPGGYHAAIRAAQLGKKVL 31


>gi|313117014|ref|YP_004038138.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
 gi|312294966|gb|ADQ69002.1| thioredoxin reductase [Halogeometricum borinquense DSM 11551]
          Length = 192

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +VIV+GGG AG  AA  A K G  T + 
Sbjct: 3  NVIVVGGGPAGLSAALFAQKNGLETTVF 30


>gi|222154086|gb|ACM47228.1| putative flavin-containing monooxygenase [Epichloe festucae]
          Length = 540

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
          M   + DVIV+G G +G  AA    KLG        +   +G +    A  G  
Sbjct: 1  MTLTNLDVIVVGAGFSGILAAHRLRKLGFRVQGFE-RQERLGGVWRENAYPGAA 53


>gi|213967863|ref|ZP_03396009.1| conserved hypothetical protein TIGR00275 [Pseudomonas syringae
          pv. tomato T1]
 gi|213927206|gb|EEB60755.1| conserved hypothetical protein TIGR00275 [Pseudomonas syringae
          pv. tomato T1]
          Length = 408

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 21 DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 50


>gi|212711270|ref|ZP_03319398.1| hypothetical protein PROVALCAL_02342 [Providencia alcalifaciens DSM
           30120]
 gi|212685999|gb|EEB45527.1| hypothetical protein PROVALCAL_02342 [Providencia alcalifaciens DSM
           30120]
          Length = 409

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 41/155 (26%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++ +YDVI+IG G AG  AA    + G       H  +                  L RE
Sbjct: 1   MSVNYDVIIIGSGPAGMAAAQTLRRRGI------HNIA-----------------ILERE 37

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
             A  G+                  KG              +   + + +     L   +
Sbjct: 38  AHA-GGVPRHCQHPTFGLLAFKRPMKG------------NQFAERIIKNLGDTPILT--R 82

Query: 122 GEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTG 155
             V     + N + ++   D    +R   +++ TG
Sbjct: 83  STVTQL--QPNGVLTVTTPDGVVEMRAKRILIATG 115


>gi|169619465|ref|XP_001803145.1| hypothetical protein SNOG_12929 [Phaeosphaeria nodorum SN15]
 gi|160703828|gb|EAT79729.2| hypothetical protein SNOG_12929 [Phaeosphaeria nodorum SN15]
          Length = 491

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 62/203 (30%), Gaps = 11/203 (5%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLV 59
           +   DV+++G G  GC AA    K G S  L+         I  +      GG+     +
Sbjct: 56  HHEADVVIVGAGIVGCAAAVAFGKQGRSVLLLEKSLKEPDRI--VGELLQPGGVNALEKL 113

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
              D LD +         + +        PA       +    +   ++ +  +  N+ V
Sbjct: 114 GMKDCLDDIDAIPCYGYQVSYHREPTPSKPAR--GAAPSTMARFISKLRAKARATPNVTV 171

Query: 120 IQGEVAGFN--TEKNIISSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMG 175
           ++  V         N +   V    D    +     +     +R      +L      M 
Sbjct: 172 VETTVTDIVKSEYNNQVLGAVTLVADGYASKFRKEYIAQQPEVRSKFWGLELIDAELPMP 231

Query: 176 DSPSNSLFNSFMKFDFDTGRLKT 198
           +     L ++     +  G  +T
Sbjct: 232 NHGHVILTDAPPILIYQIGTHET 254


>gi|159897485|ref|YP_001543732.1| amine oxidase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890524|gb|ABX03604.1| amine oxidase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 434

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++    V+VIGGG AG  AA   A+ G    ++               +GG  + +    
Sbjct: 1   MHTQKPVVVIGGGLAGLTAANYLARAGKQVIILE----------RAKHLGGRARTNREHG 50

Query: 62  IDALDGLMGRVADAAGIQ-FRVLNV-KKGPAVRGPR-TQADRELYRLAMQREILSQENL 117
            +   G        AG +  R LNV   G     P    A+++LY     +  LS   L
Sbjct: 51  FEINFGPHALYLKGAGARVLRELNVLPFGSKPIAPDVLLAEQQLYPTKSIKAALSTSLL 109


>gi|111023809|ref|YP_706781.1| putative oxidoreductase/HEAT repeat-containing protein [Rhodococcus
           jostii RHA1]
 gi|110823339|gb|ABG98623.1| oxidoreductase [Rhodococcus jostii RHA1]
          Length = 879

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 37/211 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGHLV----REI 62
           +VIGGG AG  AA  AA+ GA+  L+         +  +   A+G  G  + V     E 
Sbjct: 2   LVIGGGTAGTMAALTAAENGANVLLLE-----KAHVRHSGALAMGMDGVNNAVIPGKAEP 56

Query: 63  DALDGLMGRVADAAGIQFRVLNVK-KGPAVRGPRT-----QADRELYRLAMQREILSQ-- 114
           +     + R  D    Q  V     +G A+   R      + +++ Y     R +     
Sbjct: 57  EDYVAEITRANDGIVNQRTVYQTATRGFAM-VQRLEKYGVKFEKDEYGEYAVRRVHRSGS 115

Query: 115 ------ENLDVIQG---------EVAGFNTEKNII-SSIVMQDNSMIRCSTVVLTTGTFL 158
                 E  DV +                 E  ++   ++ ++   +  + +   TG F+
Sbjct: 116 YVLPMPEGKDVKKALYRVLRQRKMREKIRIENRLMPVRVLTENGRAVGAAALNTRTGEFV 175

Query: 159 R-GVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188
             G   +     P GR+G   S  L+ ++  
Sbjct: 176 AVGAKAVILATGPCGRLGLPASGYLYGTYEN 206


>gi|28872122|ref|NP_794741.1| hypothetical protein PSPTO_5008 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28855376|gb|AAO58436.1| conserved hypothetical protein TIGR00275 [Pseudomonas syringae
          pv. tomato str. DC3000]
 gi|331014544|gb|EGH94600.1| hypothetical protein PLA106_01555 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|66043782|ref|YP_233623.1| hypothetical protein Psyr_0515 [Pseudomonas syringae pv. syringae
          B728a]
 gi|63254489|gb|AAY35585.1| HI0933-like protein [Pseudomonas syringae pv. syringae B728a]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRKVMLIDH 34


>gi|23099924|ref|NP_693390.1| thioredoxin reductase (NADPH) [Oceanobacillus iheyensis HTE831]
 gi|22778155|dbj|BAC14425.1| thioredoxin reductase (NADPH) (general stress protein)
          [Oceanobacillus iheyensis HTE831]
          Length = 315

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + YDVI+ G G AG  AA  A++    T ++
Sbjct: 4  EKMYDVIIAGAGPAGMTAAVYASRANLDTLML 35


>gi|298292102|ref|YP_003694041.1| HI0933 family protein [Starkeya novella DSM 506]
 gi|296928613|gb|ADH89422.1| HI0933 family protein [Starkeya novella DSM 506]
          Length = 389

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV+VIG G AG   A  A + G    +I H
Sbjct: 2  DVVVIGAGAAGMMCAIEAGRRGRRVVVIDH 31


>gi|296165529|ref|ZP_06848058.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899107|gb|EFG78584.1| FAD dependent oxidoreductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 541

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV+V+GGGH G  AA   A+ G    ++      +G  +    +      H
Sbjct: 8  DVLVVGGGHNGLVAACYLARAGLDVLVLE-SRDVLGGCTTTEILIPEAPEH 57


>gi|269955276|ref|YP_003325065.1| geranylgeranyl reductase [Xylanimonas cellulosilytica DSM 15894]
 gi|269303957|gb|ACZ29507.1| geranylgeranyl reductase [Xylanimonas cellulosilytica DSM 15894]
          Length = 431

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPAIGGLGKGHLVREID 63
          DVIV+G G AG   A   A  G    L+         I    C   +       L R   
Sbjct: 10 DVIVVGAGPAGSSTAHWCASAGLDVLLLEKSAFPRDKI----CGDGLTPRAVAELARMGV 65

Query: 64 ALD 66
          ALD
Sbjct: 66 ALD 68


>gi|197286895|ref|YP_002152767.1| oxidoreductase [Proteus mirabilis HI4320]
 gi|194684382|emb|CAR46040.1| putative oxidoreductase [Proteus mirabilis HI4320]
          Length = 375

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
           +D+ VIG G  G   A  AA+ G   A+     + +G+   N
Sbjct: 2  KFDIAVIGAGIIGLSHAYAAAQRGLRVAIFERSYTPVGASVRN 44


>gi|169830310|ref|YP_001716292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637154|gb|ACA58660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 1013

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46
           D +VIGGG AG  AA   A  G   +L+  K+  +G M+ 
Sbjct: 600 DALVIGGGIAGMNAALDLANQGFKVSLVE-KSDQLGGMAR 638


>gi|281358322|ref|ZP_06244804.1| FAD dependent oxidoreductase [Victivallis vadensis ATCC BAA-548]
 gi|281315149|gb|EFA99180.1| FAD dependent oxidoreductase [Victivallis vadensis ATCC BAA-548]
          Length = 448

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV VIGG   G  AA  AA+LGA   L+  +    G+ SC                  + 
Sbjct: 18  DVCVIGGSCTGVFAAVRAARLGARVILVEKQNRLGGTASCGLVSMWHSVFDATGTRQVIG 77

Query: 67  GL---MGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI--- 120
           GL   M    +  G     +   + PA    R  +  EL  L +   +    N+ +    
Sbjct: 78  GLTFEMMERLERCGG----IGNFRTPAEFNIRLNS--ELLTLELDALVEEHPNIRLFLQT 131

Query: 121 ---------QGEVAGFNTEKN 132
                     GEV     E N
Sbjct: 132 SFSRAVMRAPGEVEAVIAENN 152


>gi|152967501|ref|YP_001363285.1| L-aspartate oxidase [Kineococcus radiotolerans SRS30216]
 gi|151362018|gb|ABS05021.1| L-aspartate oxidase [Kineococcus radiotolerans SRS30216]
          Length = 528

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DV+V+G G AG  AA  AA+ G    L T
Sbjct: 14 DVLVVGAGIAGLTAALEAARTG-RVVLAT 41


>gi|332796377|ref|YP_004457877.1| thiazole biosynthesis protein [Acidianus hospitalis W1]
 gi|332694112|gb|AEE93579.1| thiazole biosynthesis enzyme [Acidianus hospitalis W1]
          Length = 264

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV+++G G +G  AA   AK G  T +   + S
Sbjct: 33 DVVIVGAGPSGMTAAYYLAKAGLKTVIFERRLS 65


>gi|332535616|ref|ZP_08411382.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|332034971|gb|EGI71493.1| 2-octaprenyl-6-methoxyphenol hydroxylase [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 395

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAK 26
          + + +DV++IGGG AG   A   AK
Sbjct: 1  MAKQFDVVIIGGGLAGASCALSVAK 25


>gi|326404464|ref|YP_004284546.1| putative oxidoreductase [Acidiphilium multivorum AIU301]
 gi|325051326|dbj|BAJ81664.1| putative oxidoreductase [Acidiphilium multivorum AIU301]
          Length = 372

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V+V+GGG AG  AA   ++ G +  L        G +  NP      +  ++R   A   
Sbjct: 6  VLVVGGGIAGLSAAWGLSRRGFAVELFEQ-----GPLP-NPRASSHDEHRIIR--HAYGE 57

Query: 68 LMGRVADAAGI 78
          L G        
Sbjct: 58 LEGYAHMMPAA 68


>gi|317484039|ref|ZP_07942972.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
 gi|316924683|gb|EFV45836.1| NADH flavin oxidoreductase/NADH oxidase [Bilophila wadsworthia
           3_1_6]
          Length = 645

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM---SCNP 48
           V VIGGG AG +AA  A   G +  L   K+  +G +   +C P
Sbjct: 385 VAVIGGGPAGMQAALAARFRGHTVDLYE-KSDRLGGLLNVACKP 427


>gi|310817219|ref|YP_003965183.1| hypothetical protein EIO_2812 [Ketogulonicigenium vulgare Y25]
 gi|308755954|gb|ADO43883.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 403

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +S + +V+G G AG  AA   A+ G    ++
Sbjct: 9  KSCEALVVGAGPAGLMAAEAMARAGLRVLIV 39


>gi|289523643|ref|ZP_06440497.1| 2-enoate reductase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503335|gb|EFD24499.1| 2-enoate reductase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 668

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
           D++V+GGG  GCE A   A+ G S  ++      + +
Sbjct: 529 DILVVGGGLVGCETALWLAQQGKSVTIVEMLDELMSA 565



 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           + VIGGG AG EAA VAA  G    L 
Sbjct: 407 ICVIGGGLAGMEAARVAALRGHDVTLY 433


>gi|163753283|ref|ZP_02160407.1| succinate dehydrogenase [Kordia algicida OT-1]
 gi|161327015|gb|EDP98340.1| succinate dehydrogenase [Kordia algicida OT-1]
          Length = 665

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DVIV+G G AG  AAA  A+LG +     
Sbjct: 35 DVIVVGTGLAGGSAAATLAELGYNVKAFC 63


>gi|146276132|ref|YP_001166291.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC
          17025]
 gi|145554373|gb|ABP68986.1| dihydrolipoamide dehydrogenase [Rhodobacter sphaeroides ATCC
          17025]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          ++DVI+IG G  G  +A   A+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  TFDVIIIGAGPGGYVSAIRCAQLGLKTAVVEGR-DTLGGTCLNVGCIPSKALLHATHNLH 61

Query: 61 EID---ALDGLMG 70
          E+       GLMG
Sbjct: 62 EVHENFEKMGLMG 74


>gi|118473132|ref|YP_886107.1| flavoprotein disulfide reductase [Mycobacterium smegmatis str. MC2
           155]
 gi|118174419|gb|ABK75315.1| dihydrolipoamide dehydrogenase [Mycobacterium smegmatis str. MC2
           155]
          Length = 471

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSM----SCNPAIGGLGKGHLVREI 62
           ++++GGG AG EAA VAA  G   A +T      IG       C P+   +    +  E+
Sbjct: 5   IVILGGGPAGYEAALVAAARGPEVADVTVVDCDGIGGACVLWDCVPSKSFIAATGVRTEL 64

Query: 63  DALDGLMGRVAD--AAGIQFRVLNVK-KGPAVRGPRTQADR 100
                L G   D   A +   +LN + K  A    R  ADR
Sbjct: 65  RRAPRL-GYSIDFEQAKVGLPLLNERVKALAAAQSRDIADR 104


>gi|50364857|ref|YP_053282.1| dihydrolipate dehydrogenase [Mesoplasma florum L1]
 gi|50363413|gb|AAT75398.1| dihydrolipate dehydrogenase [Mesoplasma florum L1]
          Length = 602

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           I  S+DVIV+G G  G  +A   A+LG  T +I
Sbjct: 133 IEESFDVIVVGAGIGGYVSAIKTAQLGLKTLII 165


>gi|330838645|ref|YP_004413225.1| FAD dependent oxidoreductase [Selenomonas sputigena ATCC 35185]
 gi|329746409|gb|AEB99765.1| FAD dependent oxidoreductase [Selenomonas sputigena ATCC 35185]
          Length = 461

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          + YDV ++G G AG  AA   A+   G S  ++           C P   G  K  +
Sbjct: 2  KKYDVAIVGAGPAGVFAAYELAEKKPGLSIVVLESGNDIY--HRCCPIAAGKVKSCI 56


>gi|260887678|ref|ZP_05898941.1| FAD dependent oxidoreductase [Selenomonas sputigena ATCC 35185]
 gi|260862558|gb|EEX77058.1| FAD dependent oxidoreductase [Selenomonas sputigena ATCC 35185]
          Length = 466

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          + YDV ++G G AG  AA   A+   G S  ++           C P   G  K  +
Sbjct: 7  KKYDVAIVGAGPAGVFAAYELAEKKPGLSIVVLESGNDIY--HRCCPIAAGKVKSCI 61


>gi|260888635|ref|ZP_05899898.1| thioredoxin-disulfide reductase [Selenomonas sputigena ATCC
          35185]
 gi|330838081|ref|YP_004412661.1| Thioredoxin-disulfide reductase [Selenomonas sputigena ATCC
          35185]
 gi|260861668|gb|EEX76168.1| thioredoxin-disulfide reductase [Selenomonas sputigena ATCC
          35185]
 gi|329745845|gb|AEB99201.1| Thioredoxin-disulfide reductase [Selenomonas sputigena ATCC
          35185]
          Length = 312

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV++IG G AG  AA  A ++  ST ++
Sbjct: 9  DVVIIGAGMAGLTAALYAGRMNFSTLVL 36


>gi|239834734|ref|ZP_04683062.1| NADH oxidase [Ochrobactrum intermedium LMG 3301]
 gi|239822797|gb|EEQ94366.1| NADH oxidase [Ochrobactrum intermedium LMG 3301]
          Length = 678

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           +IV+G G AG EAA V+A+ G    + 
Sbjct: 388 IIVVGTGPAGLEAARVSAERGHKVMVF 414


>gi|229818695|ref|YP_002880221.1| FAD dependent oxidoreductase [Beutenbergia cavernae DSM 12333]
 gi|229564608|gb|ACQ78459.1| FAD dependent oxidoreductase [Beutenbergia cavernae DSM 12333]
          Length = 534

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTAL 33
          DV VIGGG  G  AA  A + G    +
Sbjct: 6  DVAVIGGGLGGVSAALAALQAGRRVVI 32


>gi|241951542|ref|XP_002418493.1| FAD-dependent oxidoreductase, putative; NADH-dependent fumarate
          reductase, putative; fumarate reductase, putative
          [Candida dubliniensis CD36]
 gi|223641832|emb|CAX43794.1| FAD-dependent oxidoreductase, putative [Candida dubliniensis
          CD36]
          Length = 503

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           YD IVIG G AG       +K G   AL+  K+  +G  S   + G  G
Sbjct: 18 KYDTIVIGSGLAGLTTTYQLSKAGQKVALLE-KSDKLGGNSIKASSGING 66


>gi|224476255|ref|YP_002633861.1| succinate dehydrogenase flavoprotein subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420862|emb|CAL27676.1| succinate dehydrogenase flavoprotein subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 596

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           M  +   VIV+GGG AG       A+ G    L +          C    G  G  +   
Sbjct: 1   MAEKK--VIVVGGGLAGMMTTIKIAEQGVHVDLFSVVPVKRSHSVCAQG-GINGAVNTKG 57

Query: 61  EID---------ALDG-------LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
           E D            G        +  +ADAA     +L+       R P    D   + 
Sbjct: 58  EGDSPWIHFDDTVYGGDFLANQPPVKAMADAAPKIIHLLDRMGVMFNRTPEGLLDFRRFG 117

Query: 105 LAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQ-DNSMIRCSTVVLTTGTFLRGV 161
             M     +       Q  V   +    K  +  +V + +        +V       RG+
Sbjct: 118 GTMHHRT-AYAGATTGQQLVYALDEQVRKFEVDGLVTKYEGWEFLG--IVKDHDGAARGI 174

Query: 162 IHIG--KLKIPAGR 173
           +       KI + R
Sbjct: 175 VAQNLTDAKIDSFR 188


>gi|239946750|ref|ZP_04698503.1| dihydrolipoyl dehydrogenase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241068683|ref|XP_002408508.1| dihydrolipoamide dehydrogenase, putative [Ixodes scapularis]
 gi|215492496|gb|EEC02137.1| dihydrolipoamide dehydrogenase, putative [Ixodes scapularis]
 gi|239921026|gb|EER21050.1| dihydrolipoyl dehydrogenase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 458

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 24/158 (15%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLV 59
           + +D++VIG G AG   +  AA+LG   A I     T+G    ++ C P+   L      
Sbjct: 2   QEFDLVVIGSGPAGYTGSIRAAQLGMKVACIEKN-DTLGGTCLNIGCIPSKALLNSSEKY 60

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
            E       +G  AD      ++L              A+++   L + + I S      
Sbjct: 61  EEALKHFESIGITADVKLDLQKML--------------ANKDKVVLDLTKGIES----LF 102

Query: 120 IQGEVAGFNTEKNIISS-IVMQDNSMIRCSTVVLTTGT 156
            + +V     E  IISS IV  +   I+   +++TTG+
Sbjct: 103 AKNKVTRIKGEAKIISSNIVEVNKEQIKAKNILITTGS 140


>gi|114769850|ref|ZP_01447460.1| hypothetical protein OM2255_09786 [alpha proteobacterium
          HTCC2255]
 gi|114549555|gb|EAU52437.1| hypothetical protein OM2255_09786 [alpha proteobacterium
          HTCC2255]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +DV +IGGG AG  AA  AA  G S  +I  K 
Sbjct: 2  FDVCIIGGGPAGLMAAETAADNGLSVVIIDAKP 34


>gi|111018818|ref|YP_701790.1| sarcosine oxidase beta subunit [Rhodococcus jostii RHA1]
 gi|110818348|gb|ABG93632.1| sarcosine oxidase beta subunit [Rhodococcus jostii RHA1]
          Length = 411

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  Y          +  +D+IQ  EV GF T+ N ++ +      +    
Sbjct: 168 ATYQPRAGIAKHDYVAWGFARRADEAGIDIIQNCEVTGFVTDGNKVTGVRTTRGDIATGQ 227

Query: 149 TVVLTTG 155
             +   G
Sbjct: 228 VALCAAG 234


>gi|307544476|ref|YP_003896955.1| FAD dependent oxidoreductase [Halomonas elongata DSM 2581]
 gi|307216500|emb|CBV41770.1| FAD dependent oxidoreductase [Halomonas elongata DSM 2581]
          Length = 430

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +R  DV VIGGG  GC AA   A+ G S  L+
Sbjct: 31 DRHVDVCVIGGGVTGCSAALHLAERGYSVVLL 62


>gi|306839699|ref|ZP_07472502.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Brucella sp. NF 2653]
 gi|306405279|gb|EFM61555.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Brucella sp. NF 2653]
          Length = 414

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 25/171 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG--GLGKGHLVRE 61
           D+++ GGG AG  AA      G  T L+   T KT    +    PAI            E
Sbjct: 12  DIVISGGGPAGMMAALALGARGYHTVLLGPETDKTDRRTTALIMPAIRFLEQIGVWAAIE 71

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A      R+ DA         + + PAV    ++ D   +   +   +L+ +   + +
Sbjct: 72  PEAAPLQSMRIVDATR------RLIRSPAVMFRASEIDEIAFGYNIPNAVLNAK---LAE 122

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              A  N  +  +            ++ ++    +    +V   G      
Sbjct: 123 AVAASRNIRRITVPAIEYRPNGDHVTVTLKGGDTLHTRLLVAADGRNSGAR 173


>gi|262038625|ref|ZP_06011993.1| alkyl hydroperoxide reductase subunit F [Leptotrichia goodfellowii
           F0264]
 gi|261747331|gb|EEY34802.1| alkyl hydroperoxide reductase subunit F [Leptotrichia goodfellowii
           F0264]
          Length = 326

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
             ++ DV VIGGG++G EAA   + +     L+         M     +   
Sbjct: 160 FYKNLDVAVIGGGNSGVEAALDLSGIAKHVTLLEFMPELKADMVLQDKLSER 211


>gi|238062682|ref|ZP_04607391.1| halogenase [Micromonospora sp. ATCC 39149]
 gi|237884493|gb|EEP73321.1| halogenase [Micromonospora sp. ATCC 39149]
          Length = 492

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++VIGGG AG  AAA+ A+ G S  L+
Sbjct: 5  ILVIGGGPAGSTAAALLARSGLSVTLL 31


>gi|254510631|ref|ZP_05122698.1| FAD dependent oxidoreductase [Rhodobacteraceae bacterium KLH11]
 gi|221534342|gb|EEE37330.1| FAD dependent oxidoreductase [Rhodobacteraceae bacterium KLH11]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV +IGGG  G  AA   A+ GAS A++  +T   G+   N     LG   L
Sbjct: 39 DVAIIGGGFTGVSAALHLARAGASVAVLEAETPGWGASGRNGGFCCLGGSKL 90


>gi|254514806|ref|ZP_05126867.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR5-3]
 gi|219677049|gb|EED33414.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR5-3]
          Length = 534

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + + D IVIG GH G   AA  A+ G    ++
Sbjct: 1  MSDNAMDAIVIGAGHNGLACAAYLARGGLKVRVL 34


>gi|212702986|ref|ZP_03311114.1| hypothetical protein DESPIG_01024 [Desulfovibrio piger ATCC
          29098]
 gi|212673574|gb|EEB34057.1| hypothetical protein DESPIG_01024 [Desulfovibrio piger ATCC
          29098]
          Length = 308

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++D  VIG G AG  AA    + G S  L 
Sbjct: 3  TFDAAVIGSGPAGVTAALYLVRSGCSVILF 32


>gi|254467258|ref|ZP_05080669.1| glutathione-disulfide reductase [Rhodobacterales bacterium Y4I]
 gi|206688166|gb|EDZ48648.1| glutathione-disulfide reductase [Rhodobacterales bacterium Y4I]
          Length = 451

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++  YD+ VIGGG  G  AA VAA+ GA  AL
Sbjct: 1  MSFDYDLFVIGGGSGGVRAARVAAQEGAKVAL 32


>gi|167625358|ref|YP_001675652.1| flavocytochrome c [Shewanella halifaxensis HAW-EB4]
 gi|167355380|gb|ABZ77993.1| flavocytochrome c [Shewanella halifaxensis HAW-EB4]
          Length = 519

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG----LGKGH 57
            +   D+IV+G G AG  AA  A + GAS  +       +     N  I G    +    
Sbjct: 46  FDEVVDIIVVGSGFAGMSAALQAKEAGASVMV----IDKMPVFGGNSTINGGAMAVAGSP 101

Query: 58  LVREIDALDGLMGRVADA 75
           L ++    D +   VAD 
Sbjct: 102 LQKKEGIEDSVDVMVADM 119


>gi|163746526|ref|ZP_02153884.1| regulatory protein [Oceanibulbus indolifex HEL-45]
 gi|161380411|gb|EDQ04822.1| regulatory protein [Oceanibulbus indolifex HEL-45]
          Length = 448

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  + D+IVIG G AG  AA  AA  G S A++
Sbjct: 1  MTETLDLIVIGAGMAGVNAAKKAAHAGWSVAIV 33


>gi|149200763|ref|ZP_01877738.1| glutathione-disulfide reductase [Roseovarius sp. TM1035]
 gi|149145096|gb|EDM33122.1| glutathione-disulfide reductase [Roseovarius sp. TM1035]
          Length = 453

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YD+ VIGGG  G  AA VAA+ GA  AL
Sbjct: 2  MSEFDYDLFVIGGGSGGVRAARVAAQGGARVAL 34


>gi|116252002|ref|YP_767840.1| dihydrolipoamide dehydrogenase [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115256650|emb|CAK07738.1| putative dihydrolipoyl dehydrogenase [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 482

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  A++LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRASQLGLKTAIV 33


>gi|37523538|ref|NP_926915.1| alanine dehydrogenase [Gloeobacter violaceus PCC 7421]
 gi|35214542|dbj|BAC91910.1| alanine dehydrogenase [Gloeobacter violaceus PCC 7421]
          Length = 364

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V ++GGG  G EAA +A  +GA   ++      +  +
Sbjct: 170 VAILGGGIVGTEAARIAVGMGARVTILDVNLDRLAYL 206


>gi|83950501|ref|ZP_00959234.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Roseovarius nubinhibens ISM]
 gi|83838400|gb|EAP77696.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Roseovarius nubinhibens ISM]
          Length = 402

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           M+     V+++GGG+ G EAAAVAA  G    L+   
Sbjct: 139 MVRAGAHVLIVGGGYIGLEAAAVAASRGLKVTLVEMS 175


>gi|322806048|emb|CBZ03615.1| NAD(FAD)-utilizing dehydrogenases [Clostridium botulinum H04402
           065]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      LI      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILIERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+ ++  + +     E + I  +  +    I+    +L TG
Sbjct: 119 IERNVKILLNKRITRIYKEDSNIKYVETEKGEKIKGDYFILCTG 162


>gi|265985459|ref|ZP_06098194.1| ubiquinone biosynthesis hydroxylase [Brucella sp. 83/13]
 gi|264664051|gb|EEZ34312.1| ubiquinone biosynthesis hydroxylase [Brucella sp. 83/13]
          Length = 417

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 25/171 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG--GLGKGHLVRE 61
           D+++ GGG AG  AA      G  T L+   T KT    +    PAI            E
Sbjct: 15  DIVISGGGPAGMMAALALGARGYHTVLLGPETDKTDRRTTALIMPAIRFLEQIGVWAAIE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A      R+ DA         + + PAV    ++ D   +   +   +L+ +   + +
Sbjct: 75  PEAAPLQSMRIVDATR------RLIRSPAVMFRASEIDEIAFGYNIPNAVLNAK---LAE 125

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              A  N  +  +            ++ ++    +    +V   G      
Sbjct: 126 AVAASRNIRRITVPAIEYRPNGDHVTVTLKGGDTLHTRLLVAADGRNSGAR 176


>gi|256545226|ref|ZP_05472591.1| thioredoxin-disulfide reductase [Anaerococcus vaginalis ATCC
          51170]
 gi|256399053|gb|EEU12665.1| thioredoxin-disulfide reductase [Anaerococcus vaginalis ATCC
          51170]
          Length = 308

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +DVI+IG G AG  A   A +    T ++    
Sbjct: 2  FDVIIIGAGPAGLTAGLYAGRAKLKTLILEKDI 34


>gi|229030155|ref|ZP_04186216.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1271]
 gi|228731155|gb|EEL82076.1| phytoene dehydrogenase enzyme [Bacillus cereus AH1271]
          Length = 436

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++ DV+++GGG AG  A+   AK G    ++
Sbjct: 2  KNLDVVIVGGGLAGLTASIYLAKSGRKVIVL 32


>gi|228477388|ref|ZP_04062024.1| dihydrolipoyl dehydrogenase [Streptococcus salivarius SK126]
 gi|228250823|gb|EEK10011.1| dihydrolipoyl dehydrogenase [Streptococcus salivarius SK126]
          Length = 585

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + +  YD+IV+GGG AG  +A   A+LG   A++
Sbjct: 124 LADNEYDIIVVGGGPAGYYSAIRGAQLGGKVAIV 157


>gi|226313644|ref|YP_002773538.1| 2,4-dienoyl-CoA reductase [NADPH] [Brevibacillus brevis NBRC
           100599]
 gi|226096592|dbj|BAH45034.1| putative 2,4-dienoyl-CoA reductase [NADPH] [Brevibacillus brevis
           NBRC 100599]
          Length = 667

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           V VIG G AG EAA V A+ G    ++  K    G ++    + G  + +
Sbjct: 381 VAVIGAGPAGLEAARVLAERGHQVVIMEAKKQIGGQLNYARQVPGKEEFN 430


>gi|254448508|ref|ZP_05061968.1| NAD(P) transhydrogenase, alpha subunit [gamma proteobacterium
           HTCC5015]
 gi|198261891|gb|EDY86176.1| NAD(P) transhydrogenase, alpha subunit [gamma proteobacterium
           HTCC5015]
          Length = 376

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 22/180 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS------TIGSMSCNPAIGGLGKGHLVRE 61
           V+V+G G AG +A A A +LGA       +        ++G+   +  +   G+G   RE
Sbjct: 171 VLVVGAGVAGLQAIATAKRLGAQVEAYDIRPDAKEQVESLGAKLIDTGVDAAGEGGYARE 230

Query: 62  IDALDGLMGRVADAAGIQFRVLNV---------KKGPAVRGPRTQADRELYRLAMQREIL 112
           +   D    + A+A   + + +N          +  P +      AD +   + +     
Sbjct: 231 L--TDEEKAQQAEALAAKLKEVNAVITTAAIPGRPAPKIISGDMVADMKAGAVIVDMAAE 288

Query: 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
           +  N ++ Q            I+  V      I   + V  +  + + ++++  L I  G
Sbjct: 289 TGGNCELTQAGETIVTDNGVTIAGPV-----NIPSKSPVHASEMYAKNLLNLVNLMIEEG 343


>gi|241204529|ref|YP_002975625.1| dihydrolipoamide dehydrogenase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240858419|gb|ACS56086.1| dihydrolipoamide dehydrogenase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 482

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  A++LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRASQLGLKTAIV 33


>gi|153939855|ref|YP_001391065.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum F str. Langeland]
 gi|152935751|gb|ABS41249.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum F str. Langeland]
 gi|295319114|gb|ADF99491.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Clostridium botulinum F str. 230613]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      LI      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILIERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+ ++  + +     E + I  +  +    I+    +L TG
Sbjct: 119 IERNVKILLNKRITRIYKEDSNIKYVETEKGEKIKGDYFILCTG 162


>gi|148379769|ref|YP_001254310.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930888|ref|YP_001384067.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937519|ref|YP_001387607.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. Hall]
 gi|148289253|emb|CAL83349.1| putative exported protein [Clostridium botulinum A str. ATCC 3502]
 gi|152926932|gb|ABS32432.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933433|gb|ABS38932.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum A str. Hall]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      LI      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILIERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+ ++  + +     E + I  +  +    I+    +L TG
Sbjct: 119 IERNVKILLNKRITRIYKEDSNIKYVETEKGEKIKGDYFILCTG 162


>gi|113472844|gb|ABI35910.1| glutathione reductase [Rheum australe]
          Length = 498

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-----KGH 57
           +  +D+ VIG G  G  AA  +A  GA   +       I     +  IGG+G     +G 
Sbjct: 22  DYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPIS----SEVIGGVGGTCVIRGC 77

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQEN 116
           + ++I      +G   + A      LN K      +    + +  +    + + +LS   
Sbjct: 78  VPKKILVYGATLGGEIEDARNYGWELNEKIDFNWKKLLHKKTEEIVRLNGIYKRLLSGAG 137

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSM--IRCSTVVLTTGT 156
           +   +GE  G     N +  ++  D +        +++ TG+
Sbjct: 138 VKFFEGE--GKVVGPNEVH-VIQTDGTKLSYTAKHILVATGS 176


>gi|110679208|ref|YP_682215.1| glutathione reductase [Roseobacter denitrificans OCh 114]
 gi|109455324|gb|ABG31529.1| glutathione reductase [Roseobacter denitrificans OCh 114]
          Length = 484

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 25/161 (15%)

Query: 1   MINRSYDVIVIGGGHAGCEAA-AVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           M +  YD+ VIGGG  G  AA   A++ GA  AL        G        G + K  +V
Sbjct: 1   MTDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAE--EDRYG--GTCVIRGCVPKKLMV 56

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD- 118
              +     M   A A G   +             R   D   ++  +  E+   E +  
Sbjct: 57  FASEYAG--MPDEAQAYGWDMQ-------------RGGFDWPAFKTKLNAELDRLEQVYR 101

Query: 119 -VIQGEVAGFNTEKNIISS---IVMQDNSMIRCSTVVLTTG 155
            ++          +  +S    + + D        +++ TG
Sbjct: 102 RLLSESGVETFDARATVSGQHEVTLSDGQTKSAKHILVATG 142


>gi|120403438|ref|YP_953267.1| soluble pyridine nucleotide transhydrogenase [Mycobacterium
          vanbaalenii PYR-1]
 gi|119956256|gb|ABM13261.1| pyridine nucleotide-disulfide oxidoreductase dimerization region
          [Mycobacterium vanbaalenii PYR-1]
          Length = 471

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 1  MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++  YD++VIG G  G +AA  AAKLG + A++
Sbjct: 1  MASKLEYDLVVIGSGPGGQKAAIAAAKLGKTVAVV 35


>gi|78211575|ref|YP_380354.1| hypothetical protein Syncc9605_0017 [Synechococcus sp. CC9605]
 gi|78196034|gb|ABB33799.1| HI0933-like protein [Synechococcus sp. CC9605]
          Length = 422

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+IV+GGG AG  AA  AA+ G    L+
Sbjct: 10 DLIVVGGGPAGYMAAITAAEQGVRKVLV 37


>gi|46199895|ref|YP_005562.1| hypothetical protein TTC1593 [Thermus thermophilus HB27]
 gi|46197522|gb|AAS81935.1| hypothetical protein TT_C1593 [Thermus thermophilus HB27]
          Length = 452

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          + R  + +V+GGG AG  AA   A+ G    +          +SC 
Sbjct: 25 MERRVEALVVGGGLAGLSAAYFLARRGLRPWV----LEREAPLSCT 66


>gi|78048150|ref|YP_364325.1| putative pyridine nucleotide-disulphide oxidoreductase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036580|emb|CAJ24271.1| putative pyridine nucleotide-disulphide oxidoreductase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 391

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 14/138 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIG G AG  +A  A + G    +          +     + G G+ +         
Sbjct: 4   DVLVIGAGAAGLMSAFTAGQRGRKVVV----IDHANKVGKKILMSGGGRCNFTNTGTTPG 59

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR-ELYRLAMQREILSQENLDVIQGEVA 125
             +                    A   P    +  E + +A   + L Q   D+   ++ 
Sbjct: 60  NFISANRHFCKSAL---------ARYSPADFVEMVERHAIAYHEKELGQLFCDISSKQIV 110

Query: 126 GFNTEKNIISSIVMQDNS 143
               ++   + + ++   
Sbjct: 111 RMLLDECDAAGVQIRTQC 128


>gi|2078522|gb|AAC53170.1| dihydrolipoamide dehydrogenase [Mus musculus]
          Length = 509

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGH 57
          DV VIG G  GC AA  +A+LG  T  I     T+G    ++ C P+   L   H
Sbjct: 43 DVTVIGSGPGGCVAAIKSAQLGFKTVCIEKN-ETLGGTCLNVGCIPSKALLNNSH 96


>gi|298207524|ref|YP_003715703.1| succinate dehydrogenase [Croceibacter atlanticus HTCC2559]
 gi|83850160|gb|EAP88028.1| succinate dehydrogenase [Croceibacter atlanticus HTCC2559]
          Length = 667

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ DVI+IG G AG  AAA  A+LG +     
Sbjct: 32 KRNIDVIIIGTGLAGGSAAATLAELGYNVKTFC 64


>gi|325001031|ref|ZP_08122143.1| soluble pyridine nucleotide transhydrogenase [Pseudonocardia sp.
          P1]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
           YD++VIG G  G +AA  AAKLG   A+
Sbjct: 3  DYDLLVIGSGPGGQKAAIAAAKLGKRVAI 31


>gi|315122393|ref|YP_004062882.1| glutathione reductase [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495795|gb|ADR52394.1| glutathione reductase [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 461

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+IVIG G +G  +A +AA+LG   A+ 
Sbjct: 4  EYDLIVIGAGSSGVRSARLAAQLGKKVAIC 33


>gi|302342419|ref|YP_003806948.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus
           baarsii DSM 2075]
 gi|301639032|gb|ADK84354.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 745

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTSTI-GSMSCNPAIGGLGKGHLVREIDALDGL 68
           V+GGG AG  AA  AAK G+   LI  K   + G ++    +G     +   E + +  +
Sbjct: 145 VVGGGPAGMSAAIQAAKAGSQVFLIE-KEDKLGGFLNTIDKLGPQSPPYTELEDNPVAEM 203

Query: 69  MGRV 72
           +G++
Sbjct: 204 VGQI 207


>gi|255659233|ref|ZP_05404642.1| FAD dependent oxidoreductase [Mitsuokella multacida DSM 20544]
 gi|260848687|gb|EEX68694.1| FAD dependent oxidoreductase [Mitsuokella multacida DSM 20544]
          Length = 458

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          + YDV ++GGG AG  AA    +   G    +       I    C P   G  K  +
Sbjct: 2  KKYDVAIVGGGPAGVMAAYELVEKKPGLRVIVFESGKD-IYHRVC-PISAGKVKSCI 56


>gi|157382491|gb|ABV48734.1| thioredoxin reductase [Penicillium lilacinoechinulatum]
          Length = 164

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           R +D +++GGG AG  A+   A++   TAL+   +     + 
Sbjct: 38 ERIFDALIVGGGSAGLSASLALARV-QRTALLAFNSDHYRKLG 79


>gi|149201531|ref|ZP_01878505.1| hypothetical protein RTM1035_03305 [Roseovarius sp. TM1035]
 gi|149144579|gb|EDM32608.1| hypothetical protein RTM1035_03305 [Roseovarius sp. TM1035]
          Length = 390

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          D +VIG G AG  AA   A+ G    +   K S
Sbjct: 3  DALVIGAGPAGLMAARELARAGLRVVVTEAKPS 35


>gi|154248929|ref|YP_001409754.1| dihydrolipoamide dehydrogenase [Fervidobacterium nodosum Rt17-B1]
 gi|154152865|gb|ABS60097.1| dihydrolipoamide dehydrogenase [Fervidobacterium nodosum Rt17-B1]
          Length = 454

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 24/157 (15%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVRE 61
           +D ++IGGG  G   A   A LG + AL+      +G       C P    L   HL+ E
Sbjct: 2   FDAVIIGGGPGGYVCAIKLAHLGKNVALVE--KENLGGTCTNWGCIPTKALLTATHLIDE 59

Query: 62  IDALDGLMGRVADAAGIQ--FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           I          AD  G++  F   ++ K  A         R+         ++ + N+ +
Sbjct: 60  IR-------EKADKYGVKATFEGYDISKVMAHAQKSVTLSRKG-----IEFLMKKNNVTL 107

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           I+G     N  +  I     +   +     +VL  G+
Sbjct: 108 IKGTAEVVNKNQVKIK----ESGEIFEGKNLVLAHGS 140


>gi|114764382|ref|ZP_01443608.1| 2,4-dienoyl-CoA reductase (NADPH) protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114543136|gb|EAU46154.1| 2,4-dienoyl-CoA reductase (NADPH) protein [Roseovarius sp.
           HTCC2601]
          Length = 678

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V ++G G AG EAA VAA+ G    + 
Sbjct: 388 VTIVGAGPAGMEAARVAAERGHEVTVF 414


>gi|113473793|ref|YP_718056.1| ferredoxin reductase component of carbazole 1,9a-dioxygenase
           [Sphingomonas sp. KA1]
 gi|84871633|dbj|BAE75877.1| ferredoxin reductase component of carbazole 1,9a-dioxygenase
           [Sphingomonas sp. KA1]
 gi|112821473|dbj|BAF03344.1| ferredoxin reductase component of carbazole 1,9a-dioxygenase
           [Sphingomonas sp. KA1]
          Length = 420

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++ VIGGG+ G EAAAV  K+G    L+
Sbjct: 146 NICVIGGGYIGLEAAAVLTKMGCKVTLL 173


>gi|77359519|ref|YP_339094.1| monooxygenase FAD/NAD(P)-binding subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874430|emb|CAI85651.1| putative monooxygenase, FAD/NAD(P)-binding domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 388

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 17/166 (10%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI------THKTSTIGSMSCNPAIGGLGKGHLVRE 61
           V ++GGG  G   A   AK G S  ++      T  T   G      +I       L+ +
Sbjct: 6   VCIVGGGSVGLTLALGLAKAGISVVVLDAAPKQTPPTDEYGMRVSALSIASQ---TLLEQ 62

Query: 62  IDALDGLMG-RVADAAGIQFRVLNVKKGPAVRGPRTQADRELY-------RLAMQREILS 113
           ++    ++  R +    +  R  +     A    + + D   +         A+ +E+  
Sbjct: 63  LNVWPHIVALRASAYTHMDVRDADSFGKIAFNSEQLELDHLGHIVENDIICYALIKELEQ 122

Query: 114 QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159
           Q N  ++         +      + ++    I    +V   G    
Sbjct: 123 QPNATLMFDTCYQQIHQSESDVFVTLKSGEPIIAKLLVAADGANSA 168


>gi|304314881|ref|YP_003850028.1| dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302588340|gb|ADL58715.1| predicted dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 376

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLGKGHLVREID 63
            YDVI++G G AG   A + A +G    ++  K      + C   I   + + +++ +  
Sbjct: 3   EYDVIIMGAGPAGSTIARLTASMGFRVGVLDRKKILGVPLQCAGLISHRITEANVLPDNL 62

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            L+ + G V  +       ++ K+  A    RT  D+ L  LA +     +    V    
Sbjct: 63  ILNSVRGAVLHSPSGIKLRVSRKRPEAHVIDRTAYDQYLADLACEAGAELRTGTAVR--- 119

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                 + +  +  V  +   +R S +V   G 
Sbjct: 120 ------DFSEATGEVEVNGRTLRASVLVDARGQ 146


>gi|238893246|ref|YP_002917980.1| dihydrolipoamide dehydrogenase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545562|dbj|BAH61913.1| dihydrolipoamide dehydrogenase [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 465

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDV++IGGG  G  AA  A +LG  T L+
Sbjct: 1  MHDKYDVLIIGGGPGGYVAAIRAGQLGLRTVLV 33


>gi|261345753|ref|ZP_05973397.1| pyridine nucleotide-disulfide oxidoreductase [Providencia
          rustigianii DSM 4541]
 gi|282566242|gb|EFB71777.1| pyridine nucleotide-disulfide oxidoreductase [Providencia
          rustigianii DSM 4541]
          Length = 409

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGAS 30
          ++ +YDVI+IG G AG  AA    + G  
Sbjct: 1  MSFNYDVIIIGSGPAGVAAAQTLRRRGIH 29


>gi|190891632|ref|YP_001978174.1| dihydrolipoamide dehydrogenase [Rhizobium etli CIAT 652]
 gi|190696911|gb|ACE90996.1| dihydrolipoamide dehydrogenase protein [Rhizobium etli CIAT 652]
          Length = 487

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  A++LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRASQLGLKTAIV 33


>gi|254197410|ref|ZP_04903832.1| oxidoreductase, FAD-binding [Burkholderia pseudomallei S13]
 gi|169654151|gb|EDS86844.1| oxidoreductase, FAD-binding [Burkholderia pseudomallei S13]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  + DV+VIGGG  GC  A   A+ G +  +I
Sbjct: 1  MTPTTDVVVIGGGLIGCSTALHLARRGITVRVI 33


>gi|134094963|ref|YP_001100038.1| putative squalene/phytoene dehydrogenase; carotene 7,8-desaturase
          [Herminiimonas arsenicoxydans]
 gi|133738866|emb|CAL61913.1| Conserved hypothetical protein, putative phytoene dehydrogenase
          [Herminiimonas arsenicoxydans]
          Length = 449

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V VIG G AGC AA   A+ G    L 
Sbjct: 12 VAVIGAGWAGCTAAVELARAGHQVTLY 38


>gi|111221399|ref|YP_712193.1| putative thioredoxin reductase [Frankia alni ACN14a]
 gi|111148931|emb|CAJ60610.1| putative thioredoxin reductase [Frankia alni ACN14a]
          Length = 572

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIGGG AG  +A  AA  G  T L+
Sbjct: 247 YDVVVIGGGPAGLGSAVYAASEGLRTVLV 275


>gi|504482|gb|AAA19188.1| acetoin dehydrogenase [Klebsiella pneumoniae]
          Length = 439

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDV++IGGG  G  AA  A +LG  T L+
Sbjct: 1  MHDKYDVLIIGGGPGGYVAAIRAGQLGLRTVLV 33


>gi|945058|gb|AAB40885.1| dihydrolipoamide dehydrogenase [Klebsiella pneumoniae]
          Length = 465

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDV++IGGG  G  AA  A +LG  T L+
Sbjct: 1  MHDKYDVLIIGGGPGGYVAAIRAGQLGLRTVLV 33


>gi|15920562|ref|NP_376231.1| ribulose-1,5-biphosphate synthetase [Sulfolobus tokodaii str. 7]
 gi|74574794|sp|Q975R0|RUBPS_SULTO RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|15621345|dbj|BAB65340.1| 266aa long hypothetical thiamine biosynthetic enzyme [Sulfolobus
          tokodaii str. 7]
          Length = 266

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++G G +G  AA   AK G  T + 
Sbjct: 35 DVVIVGAGPSGMTAAYYLAKAGLKTVVF 62


>gi|15921459|ref|NP_377128.1| L-aspartate oxidase [Sulfolobus tokodaii str. 7]
 gi|22653866|sp|Q972D2|NADB_SULTO RecName: Full=L-aspartate oxidase; Short=LASPO; AltName:
           Full=Quinolinate synthase B
 gi|164414759|pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
 gi|164414760|pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
 gi|15622245|dbj|BAB66237.1| 472aa long hypothetical L-aspartate oxidase [Sulfolobus tokodaii
           str. 7]
          Length = 472

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 26/173 (15%)

Query: 10  VIGGGHAGCEAAAVAAKLGASTALITHKTST----IGSMSCNPAIGGLG--KGHLVREID 63
           +IG G AG  A     + G    LI+ +       I       ++G     + H    I 
Sbjct: 4   IIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIR 63

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD----------RELYRL-AMQREIL 112
             DGL         +     NV +     G   + D          R L+R     REI 
Sbjct: 64  VGDGLCDVKT-VNYVTSEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIF 122

Query: 113 S-------QENLDVIQGEVAGFNTEKNIISSIVMQD-NSMIRCSTVVLTTGTF 157
           +       +E + +I+  +     +   ++  V +    +     +VL TG +
Sbjct: 123 NFLLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGY 175


>gi|15827805|ref|NP_302068.1| L-alanine dehydrogenase [Mycobacterium leprae TN]
 gi|221230282|ref|YP_002503698.1| L-alanine dehydrogenase [Mycobacterium leprae Br4923]
 gi|13093357|emb|CAC30483.1| L-alanine dehydrogenase [Mycobacterium leprae]
 gi|219933389|emb|CAR71627.1| L-alanine dehydrogenase [Mycobacterium leprae Br4923]
          Length = 371

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           DV+VIGGG AG  AA +A  +GA+  +     + +  +
Sbjct: 170 DVVVIGGGTAGYNAARIANGMGATVTVFDVNINRLREL 207


>gi|88808053|ref|ZP_01123564.1| putative sarcosine oxidase [Synechococcus sp. WH 7805]
 gi|88788092|gb|EAR19248.1| putative sarcosine oxidase [Synechococcus sp. WH 7805]
          Length = 395

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 80/276 (28%), Gaps = 74/276 (26%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGAS-TALITHK------------TSTIGSMSCNPAIGGL 53
           +V+++GGG AG   AA  A+ G     L+  K            T     M  +P +  L
Sbjct: 11  EVVIVGGGMAGLSCAAALARRGVRDVVLLEAKTLAHARASSFGETRMFREMYSDPVLCRL 70

Query: 54  GK--------------------------GHLVREIDALDGLMG--RVADAAGIQFRVLNV 85
            +                          G    E      + G  RV D   I +  L+ 
Sbjct: 71  AQEANRLWREEEQHAGERLRETHGLLFYGESWDEETIEGSIPGARRVMDEQNIPYEALSA 130

Query: 86  KK------------GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKN 132
           K+               +  P   A R    +A  R  + Q    +++G  V   +++  
Sbjct: 131 KEIAERFPLKPRPDFTGLFEPTAGAVRSDKVIAHWRRTVEQAGHRLLEGTPVKEIDSDG- 189

Query: 133 IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFD 192
               + + D   I    VV+  G      I    L  P G         L      +   
Sbjct: 190 --GGVTLADGHHIAADQVVVACG------IWSDLLLAPLG---------LSPKLEIWPML 232

Query: 193 TGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSF 228
                      L  +   W   +++  D+  + + F
Sbjct: 233 WAHYTV--DPSLADRYPQWFCFQRERGDDGGLYYGF 266


>gi|148257257|ref|YP_001241842.1| putative NADH-dependent flavin oxidoreductase [Bradyrhizobium sp.
           BTAi1]
 gi|146409430|gb|ABQ37936.1| putative NADH-dependent flavin oxidoreductase [Bradyrhizobium sp.
           BTAi1]
          Length = 667

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           V+V+GGG AG EAA VAA LG    L        G +     +                 
Sbjct: 398 VLVVGGGPAGLEAARVAAALGHDVTLWERSDQLGGQLRTAWLMPKRANFETF-------- 449

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADR 100
           +  ++A  A +    +  K+  A       ADR
Sbjct: 450 VAFQIAALARLGVTTIFNKEASAAEIAAFGADR 482


>gi|322826109|gb|EFZ30870.1| succinate dehydrogenase flavoprotein, putative [Trypanosoma cruzi]
          Length = 609

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 67/219 (30%), Gaps = 49/219 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGG--- 52
           MI+ ++D +V+G G +G  AA   A  G   A    L   ++ TI +    N A+     
Sbjct: 19  MIDHTFDCVVVGAGGSGLRAAMGVAASGYDVACISKLYPSRSHTIAAQGGINAALANCEE 78

Query: 53  ---------LGKG------------------HLVREIDALDGLMGRVADAAGIQFRVLNV 85
                      KG                   +V E++++     R  D    Q      
Sbjct: 79  DDWRWHVYDTVKGSDWLGDQDAIQYMCQEAPCVVSELESMGLPFLRTKDGFIYQRAFGGQ 138

Query: 86  K---KGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQG-EVAGFNTEKNIISSIV 138
                G   R     +DR  +  AM   +  Q     ++            E      +V
Sbjct: 139 SIHFGGKQARRTCAASDRTGH--AMLHTLYGQSFQYGVNFFNEYYCLDLIVEDGCCRGVV 196

Query: 139 ---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
              + D ++   R    +L TG + R        K   G
Sbjct: 197 AMSIDDGTIHRFRSKYTILATGGYGRCWFTTTSAKSCTG 235


>gi|311244080|ref|XP_003121307.1| PREDICTED: PHD finger protein 3-like [Sus scrofa]
          Length = 1993

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 8/127 (6%)

Query: 432 EYRISLRPDNAD---NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
           + R S+R    D    RLT   +K   + E +  + A  I++   L S  +      KN 
Sbjct: 870 QIRQSVRHSLKDILMKRLTDSNLK---VPEEKAAKVATKIEK--ELFSFFRDTDAKYKNK 924

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGR 548
             + +   +D K    ++ +   + +  +L  + P+      L   R +          +
Sbjct: 925 YRSLMFNLKDPKNNILFKKVLRGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEK 984

Query: 549 QMIEAKE 555
           +  E + 
Sbjct: 985 EQREVER 991


>gi|301062483|ref|ZP_07203129.1| putative NADH oxidase [delta proteobacterium NaphS2]
 gi|300443413|gb|EFK07532.1| putative NADH oxidase [delta proteobacterium NaphS2]
          Length = 657

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            +   V+V+GGG AG EAA VAA  G    L 
Sbjct: 393 EKKKKVLVVGGGPAGMEAARVAALRGHDVTLY 424


>gi|299132720|ref|ZP_07025915.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Afipia sp. 1NLS2]
 gi|298592857|gb|EFI53057.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Afipia sp. 1NLS2]
          Length = 473

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIGGLGKGHLVREID 63
          DV VIG G AG   AA AA LGA T L          +    C P+   L   H  R I 
Sbjct: 8  DVCVIGAGSAGLSVAAGAAMLGARTILFERGEMGGDCLNY-GCVPSKSLLAAAHAARNIR 66


>gi|297812579|ref|XP_002874173.1| hypothetical protein ARALYDRAFT_910438 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320010|gb|EFH50432.1| hypothetical protein ARALYDRAFT_910438 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 516

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTIGSMSCNPA-------IGGLGKG 56
           DVI++G G  G   A   AK G    +I         +      P        +G     
Sbjct: 47  DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRFMLSQLGLQDCL 106

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
             +    A    + +    A   F V N    P     R+      +  +++++  S  +
Sbjct: 107 DGIDAQKATGMAVYKDGKEAVASFPVDNNN-FPYDPSARS-FHNGRFVQSLRQKASSLPS 164

Query: 117 LDVIQGEVAGFNTEKNIISSI 137
           + + +G V     EK +I  +
Sbjct: 165 VRLEEGTVKSLIEEKGVIKGV 185


>gi|296198507|ref|XP_002746742.1| PREDICTED: PHD finger protein 3 isoform 1 [Callithrix jacchus]
          Length = 2039

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 428  TSRAEYRISLRPDNAD---NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
             S  + R S+R    D    RLT   +K   + E +  + A  I++   L S  +     
Sbjct: 921  PSADQIRQSVRHSLKDILMKRLTDSNLK---VPEEKAAKVATKIEK--ELYSFFRDTDAK 975

Query: 485  SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
             KN   + +   +D K    ++ +   + +  +L  + P+      L   R +       
Sbjct: 976  YKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 1035

Query: 545  YTGRQMIEAKE 555
               ++  E + 
Sbjct: 1036 MIEKEQREVER 1046


>gi|282900566|ref|ZP_06308508.1| FAD dependent oxidoreductase [Cylindrospermopsis raciborskii
          CS-505]
 gi|281194366|gb|EFA69321.1| FAD dependent oxidoreductase [Cylindrospermopsis raciborskii
          CS-505]
          Length = 567

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 1  MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M ++  YDVI+IG GH G   AA   K G S  L+
Sbjct: 1  MNHKDEYDVIIIGAGHNGLVCAAYLLKAGYSVLLL 35


>gi|260436789|ref|ZP_05790759.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
 gi|260414663|gb|EEX07959.1| conserved hypothetical protein [Synechococcus sp. WH 8109]
          Length = 422

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          D+IV+GGG AG  AA  AA+ G    L+
Sbjct: 10 DLIVVGGGPAGYMAAITAAEQGVRRVLV 37


>gi|255264026|ref|ZP_05343368.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
 gi|255106361|gb|EET49035.1| dihydrolipoyl dehydrogenase [Thalassiobium sp. R2A62]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M   S+D+IVIG G  G  AA   A+LG   A++
Sbjct: 1  MAETSFDLIVIGAGPGGYVAAIRGAQLGLKVAIV 34


>gi|256380205|ref|YP_003103865.1| FAD-binding dehydrogenase [Actinosynnema mirum DSM 43827]
 gi|255924508|gb|ACU40019.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
          protein [Actinosynnema mirum DSM 43827]
          Length = 551

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          +    DVIV+G G AG  AA+     G    L+  +  
Sbjct: 1  MAHDADVIVVGAGLAGLVAASELVDAGRKVLLLDQEPE 38


>gi|195335378|ref|XP_002034343.1| GM19952 [Drosophila sechellia]
 gi|194126313|gb|EDW48356.1| GM19952 [Drosophila sechellia]
          Length = 894

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AGC      A+ G    L+
Sbjct: 38 DVVVIGGGSAGCHTLYHLARRGVKAVLL 65


>gi|194880861|ref|XP_001974572.1| GG21021 [Drosophila erecta]
 gi|190657759|gb|EDV54972.1| GG21021 [Drosophila erecta]
          Length = 894

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AGC      A+ G    L+
Sbjct: 38 DVVVIGGGSAGCHTLYHLARRGVKAVLL 65


>gi|194755763|ref|XP_001960152.1| GF13226 [Drosophila ananassae]
 gi|190621450|gb|EDV36974.1| GF13226 [Drosophila ananassae]
          Length = 896

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AGC      A+ G    L+
Sbjct: 41 DVVVIGGGSAGCHTLYHLARRGVKAVLL 68


>gi|86357559|ref|YP_469451.1| dihydrolipoamide dehydrogenase [Rhizobium etli CFN 42]
 gi|86281661|gb|ABC90724.1| dihydrolipoamide dehydrogenase protein [Rhizobium etli CFN 42]
          Length = 481

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  A++LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRASQLGLKTAIV 33


>gi|25012559|gb|AAN71380.1| RE37361p [Drosophila melanogaster]
          Length = 907

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AGC      A+ G    L+
Sbjct: 51 DVVVIGGGSAGCHTLYHLARRGVKAVLL 78


>gi|20130091|ref|NP_611263.1| CG6385 [Drosophila melanogaster]
 gi|7302718|gb|AAF57796.1| CG6385 [Drosophila melanogaster]
          Length = 894

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG AGC      A+ G    L+
Sbjct: 38 DVVVIGGGSAGCHTLYHLARRGVKAVLL 65


>gi|62185502|ref|YP_220287.1| dihydrolipoamide dehydrogenase [Chlamydophila abortus S26/3]
 gi|62148569|emb|CAH64341.1| dihydrolipoamide dehydrogenase [Chlamydophila abortus S26/3]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +D +VIG G  G  AA  AA+ G  TALI
Sbjct: 1  MSTDFDCVVIGAGPGGYVAAITAAQQGLKTALI 33


>gi|83954340|ref|ZP_00963060.1| dihydrolipoamide dehydrogenase [Sulfitobacter sp. NAS-14.1]
 gi|83841377|gb|EAP80547.1| dihydrolipoamide dehydrogenase [Sulfitobacter sp. NAS-14.1]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  +S+D+IVIG G  G  AA   A+LG S A++
Sbjct: 1  MAAKSFDLIVIGAGPGGYVAAIRGAQLGLSVAIV 34


>gi|83943205|ref|ZP_00955665.1| dihydrolipoamide dehydrogenase [Sulfitobacter sp. EE-36]
 gi|83846213|gb|EAP84090.1| dihydrolipoamide dehydrogenase [Sulfitobacter sp. EE-36]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  +S+D+IVIG G  G  AA   A+LG S A++
Sbjct: 1  MAAKSFDLIVIGAGPGGYVAAIRGAQLGLSVAIV 34


>gi|71414659|ref|XP_809424.1| succinate dehydrogenase flavoprotein [Trypanosoma cruzi strain CL
           Brener]
 gi|70873803|gb|EAN87573.1| succinate dehydrogenase flavoprotein, putative [Trypanosoma cruzi]
          Length = 609

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 67/219 (30%), Gaps = 49/219 (22%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTA----LITHKTSTIGSM-SCNPAIGG--- 52
           MI+ ++D +V+G G +G  AA   A  G   A    L   ++ TI +    N A+     
Sbjct: 19  MIDHTFDCVVVGAGGSGLRAAMGVAASGYDVACISKLYPSRSHTIAAQGGINAALANCEE 78

Query: 53  ---------LGKG------------------HLVREIDALDGLMGRVADAAGIQFRVLNV 85
                      KG                   +V E++++     R  D    Q      
Sbjct: 79  DDWRWHVYDTVKGSDWLGDQDAIQYMCQEAPCVVSELESMGLPFLRTKDGFIYQRAFGGQ 138

Query: 86  K---KGPAVRGPRTQADRELYRLAMQREILSQE---NLDVIQG-EVAGFNTEKNIISSIV 138
                G   R     +DR  +  AM   +  Q     ++            E      +V
Sbjct: 139 SIHFGGKQARRTCAASDRTGH--AMLHTLYGQSFQYGVNFFNEYYCLDLIVEDGCCRGVV 196

Query: 139 ---MQDNSM--IRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
              + D ++   R    +L TG + R        K   G
Sbjct: 197 AMSIDDGTIHRFRSKYTILATGGYGRCWFTTTSAKSCTG 235


>gi|329764893|ref|ZP_08256484.1| ribulose-1,5-biphosphate synthetase [Candidatus Nitrosoarchaeum
          limnia SFB1]
 gi|329138679|gb|EGG42924.1| ribulose-1,5-biphosphate synthetase [Candidatus Nitrosoarchaeum
          limnia SFB1]
          Length = 272

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          DVI+IG G AG  A+   + +G    ++   
Sbjct: 41 DVIIIGAGPAGLTASRDLSNMGFKVLVVEQN 71


>gi|294791772|ref|ZP_06756920.1| pyridine nucleotide-disulfide oxidoreductase [Veillonella sp.
           6_1_27]
 gi|294457002|gb|EFG25364.1| pyridine nucleotide-disulfide oxidoreductase [Veillonella sp.
           6_1_27]
          Length = 415

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 29/156 (18%)

Query: 16  AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL--------DG 67
           AGCE        GA   L       +  +     I G G+ ++    D          +G
Sbjct: 20  AGCE--------GARVIL----LEKMNMVGKKMGITGKGRCNITNSADMAEFIKNTPGNG 67

Query: 68  LMGRVADAAGIQFRVLNVK-----KGPAVRGPRT--QADRELYRLAMQREILSQENLDVI 120
                A        +L++      K    RG R   ++D  L    +  +IL + N+ V 
Sbjct: 68  KFLYGAYERFSNEDLLDLLHSWGLKTKVERGGRVFPESDSALEVRNIFMKILKKYNVQVH 127

Query: 121 QGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             E V     ++N +  +   D     C   ++ TG
Sbjct: 128 LNEPVTSITVQENRVVGV-TTDKEQYACDAAIICTG 162


>gi|239502560|ref|ZP_04661870.1| phytoene dehydrogenase [Acinetobacter baumannii AB900]
          Length = 457

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DVIV+G G AG   A      GA   ++  +    G+   N
Sbjct: 42 DVIVVGAGFAGLSTALELTARGAKVVVLEQEFGGFGASGRN 82


>gi|217969913|ref|YP_002355147.1| fumarate reductase flavoprotein subunit [Thauera sp. MZ1T]
 gi|217507240|gb|ACK54251.1| succinate dehydrogenase or fumarate reductase, flavoprotein subunit
           [Thauera sp. MZ1T]
          Length = 667

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 10/138 (7%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGSMSCNPAIGGLGK 55
           M     DV+V+GGG AG   A  AA+      +++   +              ++G   K
Sbjct: 1   MRIEYTDVLVVGGGLAGLRTAVGAARRRLRVEVLSLVPAKRSHSVAAQGGMQASLGNAFK 60

Query: 56  GHLVREIDALDGLMGRVADAAGIQF--RVLNVKKGPAVRGPRT-QADRELYRLAMQREIL 112
           G    E       + R +D    Q   R+       AVR            +      ++
Sbjct: 61  GMGDNEDVHFGDTV-RGSDWGCDQLVARMFAHMAPKAVRELAAWGVPWNRVQRGAHEVVI 119

Query: 113 SQENLDVIQ-GEVAGFNT 129
           + E + + +  E  G  T
Sbjct: 120 NGERVTLTERDEAHGLIT 137


>gi|254516663|ref|ZP_05128722.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR5-3]
 gi|219675086|gb|EED31453.1| putative oxidoreductase family protein [gamma proteobacterium
          NOR5-3]
          Length = 514

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YD IVIG GH G   A + AK G    ++
Sbjct: 3  TYDTIVIGAGHNGLICATLLAKAGQRVLVL 32


>gi|254451456|ref|ZP_05064893.1| alcohol dehydrogenase [Octadecabacter antarcticus 238]
 gi|198265862|gb|EDY90132.1| alcohol dehydrogenase [Octadecabacter antarcticus 238]
          Length = 538

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 1  MINRS-----YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M+ +      YD IVIG G AGC  A    + G S  L+
Sbjct: 1  MMEKKLSQEVYDYIVIGAGSAGCAVAGRLGEAGHSVLLL 39


>gi|195056497|ref|XP_001995110.1| GH22974 [Drosophila grimshawi]
 gi|193899316|gb|EDV98182.1| GH22974 [Drosophila grimshawi]
          Length = 667

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 77/250 (30%), Gaps = 51/250 (20%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSM-SCNPAIGGL-- 53
           +I+ +YD IV+G G +G  AA      G  TA+IT     ++ TI +    N A+G +  
Sbjct: 60  VIDHAYDAIVVGAGGSGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEQ 119

Query: 54  ----------GKG------------------HLVREIDALDGLMGRVAD----AAGIQFR 81
                      KG                    V E++       R  D          +
Sbjct: 120 DDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQ 179

Query: 82  VLNVKKGPAVRGPRTQADRELYRL---AMQREILSQENLDVIQGEVAGFNTEKNIISSIV 138
            L   KG         ADR  + L      + +    N   ++        E+     ++
Sbjct: 180 SLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLSYDCN-YFVEYFALDLIFEEGECRGVL 238

Query: 139 ---MQDNS--MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS-PSNSLFNSFMKF--D 190
              ++D S    R    V+ TG + R            G          L +  ++F   
Sbjct: 239 AINLEDGSLHRFRAQNTVIATGGYGRAFFSCTSAHTCTGDGTALVARQGLPSQDLEFVQF 298

Query: 191 FDTGRLKTGT 200
             TG    G 
Sbjct: 299 HPTGIYGAGC 308


>gi|187932417|ref|YP_001885568.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium botulinum B str. Eklund 17B]
 gi|187720570|gb|ACD21791.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Clostridium botulinum B str. Eklund 17B]
          Length = 428

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +N   D++VIG G AG   A  AA+LG    LI   
Sbjct: 1  MNNIIDLLVIGAGPAGLMTAKTAAELGLKVTLIEKN 36


>gi|126434674|ref|YP_001070365.1| L-alanine dehydrogenase [Mycobacterium sp. JLS]
 gi|126234474|gb|ABN97874.1| L-alanine dehydrogenase [Mycobacterium sp. JLS]
          Length = 371

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+VIGGG AG  AAAVA  +GA   +     +
Sbjct: 171 VVVIGGGMAGDNAAAVAWGMGAHVTVFDVNIN 202


>gi|108799071|ref|YP_639268.1| L-alanine dehydrogenase [Mycobacterium sp. MCS]
 gi|119868186|ref|YP_938138.1| L-alanine dehydrogenase [Mycobacterium sp. KMS]
 gi|108769490|gb|ABG08212.1| L-alanine dehydrogenase [Mycobacterium sp. MCS]
 gi|119694275|gb|ABL91348.1| L-alanine dehydrogenase [Mycobacterium sp. KMS]
          Length = 371

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+VIGGG AG  AAAVA  +GA   +     +
Sbjct: 171 VVVIGGGMAGDNAAAVAWGMGAHVTVFDVNIN 202


>gi|5931575|dbj|BAA84681.1| succinate dehydrogenase [Trypanosoma cruzi]
          Length = 609

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          MI+ ++D +V+G G +G  AA   A  G   A I+
Sbjct: 19 MIDHTFDCVVVGAGGSGLRAAMGVAASGYDVACIS 53


>gi|71414352|ref|XP_809281.1| succinate dehydrogenase flavoprotein [Trypanosoma cruzi strain CL
          Brener]
 gi|70873639|gb|EAN87430.1| succinate dehydrogenase flavoprotein, putative [Trypanosoma
          cruzi]
          Length = 167

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          MI+ ++D +V+G G +G  AA   A  G   A I+
Sbjct: 19 MIDHTFDCVVVGAGGSGLRAAMGVAASGYDVACIS 53


>gi|226944877|ref|YP_002799950.1| HI0933-like protein [Azotobacter vinelandii DJ]
 gi|226719804|gb|ACO78975.1| HI0933-like protein [Azotobacter vinelandii DJ]
          Length = 411

 Score = 39.9 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          VI+IG G AG   A  AA  G    L                + G G+ +
Sbjct: 23 VIIIGAGAAGLMCAMSAAARGRRVLL----LDHANKAGKKILMSGGGRCN 68


>gi|289641485|ref|ZP_06473648.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Frankia symbiont of Datisca glomerata]
 gi|289508695|gb|EFD29631.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Frankia symbiont of Datisca glomerata]
          Length = 480

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVREID 63
          ++++GGG  G EAA V A+LGA   L    +  +G       C P+   +     + E+ 
Sbjct: 4  IVILGGGPGGYEAALVGAELGAFVTL--VDSDGVGGACVLTDCVPSKALIATSAAMTELA 61

Query: 64 ALDGLMGRVAD 74
          A   L  R+ D
Sbjct: 62 AAPSLGVRLRD 72


>gi|262200292|ref|YP_003271500.1| FAD dependent oxidoreductase [Gordonia bronchialis DSM 43247]
 gi|262083639|gb|ACY19607.1| FAD dependent oxidoreductase [Gordonia bronchialis DSM 43247]
          Length = 513

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG--SMSCNPAIGGLGK 55
          +D I+IG GH G  AAA  A+ G S  ++  ++  +G  ++S  P  G   +
Sbjct: 3  FDDIIIGAGHNGLTAAAYLARAGRSVLVLE-RSDHVGGAAISAMPFPGMPAR 53


>gi|257453608|ref|ZP_05618898.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257449066|gb|EEV24019.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 442

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          YDVI+IG G +G   A  A K G    +                + G G+ +
Sbjct: 32 YDVIIIGAGASGLFCALTAGKRGRRVLV----LDHANKAGKKILMSGGGRCN 79


>gi|257461115|ref|ZP_05626213.1| putative pyridine nucleotide-disulfide oxidoreductase YkgC
           [Campylobacter gracilis RM3268]
 gi|257441489|gb|EEV16634.1| putative pyridine nucleotide-disulfide oxidoreductase YkgC
           [Campylobacter gracilis RM3268]
          Length = 446

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YD+IVIG G AG   AA +A LG   ALI       G    N     +G     R + A
Sbjct: 2   DYDIIVIGFGKAGKTLAAKSAALGKKVALIERSPQMYGGTCIN-----VGCIPTKRLVTA 56

Query: 65  LDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
                G V      ++ VL++ KK   V   R +       LAM   +    N+DVI GE
Sbjct: 57  SK-EAGFVNFGVLGEYFVLSMQKKDELVEALRAK------NLAM---LKGNPNIDVIDGE 106

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +  +     + S   Q    I   T+V+ TG+
Sbjct: 107 GSFTSANSVRVLSPDGQT-REISAETIVVNTGS 138


>gi|227823347|ref|YP_002827319.1| putative FAD-binding dehydrogenase [Sinorhizobium fredii NGR234]
 gi|227342348|gb|ACP26566.1| putative fumarate reductase/succinate dehydrogenase flavoprotein
          [Sinorhizobium fredii NGR234]
          Length = 549

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIG G AG  AA+ AA LG    ++
Sbjct: 4  DVLVIGAGLAGLVAASEAAALGRKVIVL 31


>gi|227486987|ref|ZP_03917303.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227541851|ref|ZP_03971900.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227093061|gb|EEI28373.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227182294|gb|EEI63266.1| possible dihydrolipoyl dehydrogenase [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V++IGGG AG EAA    K GA   L+
Sbjct: 5  VVIIGGGPAGYEAAFAGTKYGAEVTLV 31


>gi|71064681|ref|YP_263408.1| succinate dehydrogenase flavoprotein subunit [Psychrobacter
          arcticus 273-4]
 gi|71037666|gb|AAZ17974.1| succinate dehydrogenase subunit A [Psychrobacter arcticus 273-4]
          Length = 616

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +YD +++GGG +G  A+   A+ G   A++T
Sbjct: 16 NYDAVIVGGGGSGMRASLHLAEAGMKVAVLT 46


>gi|17227624|ref|NP_484172.1| geranylgeranyl hydrogenase [Nostoc sp. PCC 7120]
 gi|17135106|dbj|BAB77652.1| geranylgeranyl hydrogenase [Nostoc sp. PCC 7120]
          Length = 406

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          V V+G G AG  AA   AK G  T L   K   
Sbjct: 5  VAVVGSGPAGSSAAETLAKAGIETYLFERKLDN 37


>gi|332982504|ref|YP_004463945.1| NADH:flavin oxidoreductase/NADH oxidase [Mahella australiensis 50-1
           BON]
 gi|332700182|gb|AEE97123.1| NADH:flavin oxidoreductase/NADH oxidase [Mahella australiensis 50-1
           BON]
          Length = 640

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V V GGG AG EAA VAA+ G    L   K+  +G
Sbjct: 382 VFVAGGGPAGMEAAIVAAQRGHEVHLYE-KSDRLG 415


>gi|328857072|gb|EGG06190.1| hypothetical protein MELLADRAFT_36236 [Melampsora larici-populina
          98AG31]
          Length = 687

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGAS---------TALITHKTSTIGSMSCNPAIGGLGKGH 57
          DV++IG G AG  AAA  A+ G           T + T +   + S S            
Sbjct: 26 DVLIIGAGPAGLMAAACLARYGVHNIRIVDKRMTQIFTGQADALNSRSIEILHALEMGTQ 85

Query: 58 LVREIDALD 66
          ++ E + L 
Sbjct: 86 IMEESNELG 94


>gi|326387769|ref|ZP_08209375.1| dihydrolipoamide dehydrogenase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207815|gb|EGD58626.1| dihydrolipoamide dehydrogenase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 470

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTI----GSMSCNPAIGGLGKG 56
           +  ++DVIV+G G  G  AA  AA+LG  TA++       I    G +     +      
Sbjct: 1   MADTFDVIVLGSGPGGYVAAIRAAQLGLKTAIVERENLGGICLNWGCIPTKALLRSAEVF 60

Query: 57  HLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
           H ++   A           A    R          RG   Q ++ +  L  + +I     
Sbjct: 61  HQMQHAKAYG--------LAADNVRADLGAVVARSRGVAKQLNQGVTHLMKKNKISVFMG 112

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
             V++G        K  ++    +   ++    +V+ TG   R +
Sbjct: 113 TGVLKG------PGKLEVTG--DKGVEVLSAKHIVVATGARARDL 149


>gi|317151348|ref|XP_001824605.2| sulphydryl oxidase [Aspergillus oryzae RIB40]
          Length = 376

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IGGG +G  AA+  +++   + L 
Sbjct: 29 NYDVIIIGGGPSGLSAASALSRVLRKSVLF 58


>gi|302842650|ref|XP_002952868.1| hypothetical protein VOLCADRAFT_82001 [Volvox carteri f.
           nagariensis]
 gi|300261908|gb|EFJ46118.1| hypothetical protein VOLCADRAFT_82001 [Volvox carteri f.
           nagariensis]
          Length = 492

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTI-GSMSCNPAIG 51
           YD +++G G +G   A   ++ GA  AL+   T       G   C PAI 
Sbjct: 63  YDAVIVGAGPSGSVCAYYMSRGGAKVALLEKETFPRDKYCGDAVCTPAIR 112


>gi|269216795|ref|ZP_06160649.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
 gi|269129602|gb|EEZ60686.1| putative fumarate reductase flavoprotein subunit [Slackia exigua
           ATCC 700122]
          Length = 642

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           D++++GGG+AG   A  A + GA  A++
Sbjct: 82  DIVIVGGGNAGTMCATAATEAGAKVAVL 109


>gi|227505366|ref|ZP_03935415.1| possible dihydrolipoyl dehydrogenase [Corynebacterium striatum
          ATCC 6940]
 gi|227198068|gb|EEI78116.1| possible dihydrolipoyl dehydrogenase [Corynebacterium striatum
          ATCC 6940]
          Length = 482

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          +++IGGG AG EAA   AK GA   L+
Sbjct: 16 IVIIGGGPAGYEAAIAGAKYGAHITLV 42


>gi|289580727|ref|YP_003479193.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Natrialba magadii ATCC 43099]
 gi|289530280|gb|ADD04631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Natrialba magadii ATCC 43099]
          Length = 348

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 12/107 (11%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALI-------THKTSTIGSMSCNPAIGGLGKGH 57
            YDV V+GGG AG  +A    +L   T +I            T   +    A+ G     
Sbjct: 6   DYDVAVVGGGPAGLTSALYTTRLALDTVVIDRGGGRAAMMQETHNVIGITEAVSGNELLQ 65

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR 104
             RE      + G  AD        +      A  G R + D E YR
Sbjct: 66  TAREQ-----VQGYGADVERGFVESVTPLGEAADDGFRVETDAESYR 107


>gi|238505622|ref|XP_002384027.1| thioredoxin reductase, putative [Aspergillus flavus NRRL3357]
 gi|220690141|gb|EED46491.1| thioredoxin reductase, putative [Aspergillus flavus NRRL3357]
          Length = 389

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IGGG +G  AA+  +++   + L 
Sbjct: 29 NYDVIIIGGGPSGLSAASALSRVLRKSVLF 58


>gi|166236895|gb|ABY86217.1| thioredoxin reductase [Aspergillus flavus]
          Length = 384

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IGGG +G  AA+  +++   + L 
Sbjct: 24 NYDVIIIGGGPSGLSAASALSRVLRKSVLF 53


>gi|166236893|gb|ABY86216.1| thioredoxin reductase [Aspergillus flavus]
          Length = 385

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IGGG +G  AA+  +++   + L 
Sbjct: 25 NYDVIIIGGGPSGLSAASALSRVLRKSVLF 54


>gi|149191544|ref|ZP_01869791.1| predicted oxidoreductase, Fe-S subunit [Vibrio shilonii AK1]
 gi|148834618|gb|EDL51608.1| predicted oxidoreductase, Fe-S subunit [Vibrio shilonii AK1]
          Length = 1038

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V VIG G AG  AA   A+ G    + 
Sbjct: 555 VAVIGAGPAGLSAAYFIARAGHPVKIF 581


>gi|126729216|ref|ZP_01745030.1| hypothetical protein SSE37_23489 [Sagittula stellata E-37]
 gi|126710206|gb|EBA09258.1| hypothetical protein SSE37_23489 [Sagittula stellata E-37]
          Length = 433

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
          DV V+GGG+ G  AA   A+ G    L+       G+   N    G G+      ++ + 
Sbjct: 38 DVCVVGGGYTGLSAALHLAEAGLDVVLVEAHRVGFGASGRNGGQLGSGQRQDQFTLEKMV 97

Query: 67 G 67
          G
Sbjct: 98 G 98


>gi|83773345|dbj|BAE63472.1| unnamed protein product [Aspergillus oryzae]
          Length = 389

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IGGG +G  AA+  +++   + L 
Sbjct: 29 NYDVIIIGGGPSGLSAASALSRVLRKSVLF 58


>gi|54024169|ref|YP_118411.1| putative monooxygenase [Nocardia farcinica IFM 10152]
 gi|54015677|dbj|BAD57047.1| putative monooxygenase [Nocardia farcinica IFM 10152]
          Length = 494

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK 55
          ++R ++VIV+G G +G  AA    + G S  L+  K  T G         G   
Sbjct: 1  MSRHHEVIVVGAGVSGVCAAVELRRAGVSDVLVLEKAETYGGTWRANTYPGCAC 54


>gi|329963718|ref|ZP_08301164.1| dihydrolipoyl dehydrogenase [Bacteroides fluxus YIT 12057]
 gi|328527728|gb|EGF54720.1| dihydrolipoyl dehydrogenase [Bacteroides fluxus YIT 12057]
          Length = 452

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 15/152 (9%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y V +IGGG AG  AA  A K G S  L                 G +    L+     
Sbjct: 2   KYQVAIIGGGPAGYTAAEAAGKAGLSVVLF----EKQNLGGVCLNEGCIPTKTLLYSAKT 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
            DG       AA     V  V         R Q       L ++ ++ +  N+ ++ GE 
Sbjct: 58  YDG----ARHAAKYAVNVPEVTFDLPKIIARKQKVVRKLVLGVKGKLTAH-NVAIVSGEA 112

Query: 125 AGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
                + ++          +  C  ++L TG+
Sbjct: 113 T-IIDKNHVQCG-----EEVYECDNLLLCTGS 138


>gi|323358310|ref|YP_004224706.1| protoporphyrinogen oxidase [Microbacterium testaceum StLB037]
 gi|323274681|dbj|BAJ74826.1| protoporphyrinogen oxidase [Microbacterium testaceum StLB037]
          Length = 500

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V+V GGG AG  AA   AK+G    ++       G +  +  +GGL             G
Sbjct: 17 VVVAGGGIAGLVAARECAKVGLRVTVLEAS-DAFGGVVRSAEVGGLTLDVGAESFATRGG 75

Query: 68 LMGRVADAAGIQFRVLNVKKGPAVR 92
          ++  + D  G+   V  V   PA  
Sbjct: 76 VVSALLDELGLADAV--VSPNPAGA 98


>gi|311895177|dbj|BAJ27585.1| hypothetical protein KSE_17610 [Kitasatospora setae KM-6054]
          Length = 476

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 9  IVIGGGHAGCEAAAVAAKLGASTALI 34
          +V+GGG AG  AA   A  G  T L+
Sbjct: 24 VVVGGGLAGITAALRLADAGVRTTLL 49


>gi|326789393|ref|YP_004307214.1| thioredoxin-disulfide reductase [Clostridium lentocellum DSM
          5427]
 gi|326540157|gb|ADZ82016.1| Thioredoxin-disulfide reductase [Clostridium lentocellum DSM
          5427]
          Length = 303

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YDVI+IG G AG  A+   ++ G ST L+
Sbjct: 2  YDVIIIGAGTAGLSASIYTSRAGKSTLLL 30


>gi|296156446|ref|ZP_06839284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Burkholderia sp. Ch1-1]
 gi|295893045|gb|EFG72825.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Burkholderia sp. Ch1-1]
          Length = 448

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           +   +D++V+G G AG  AA  AA+ GAS AL+       G +      G   +  L   
Sbjct: 20  MRHHFDIVVVGAGPAGLNAAHAAARTGASVALLDDNPRAGGQIWRQ-GPGYAPQAPLHNL 78

Query: 62  IDALDGLMGRVADAAGIQFRVL 83
           + A+ G        +      L
Sbjct: 79  LTAIGGQANISHWPSTRVIAPL 100


>gi|271966815|ref|YP_003341011.1| pyridine nucleotide-disulphide oxidoreductase domain-containing
          protein [Streptosporangium roseum DSM 43021]
 gi|270509990|gb|ACZ88268.1| pyridine nucleotide-disulphide oxidoreductase domain protein
          [Streptosporangium roseum DSM 43021]
          Length = 295

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +DV +IGGG AG  AA   ++      ++
Sbjct: 2  QHFDVAIIGGGPAGLTAAMALSRSLRRVVVL 32


>gi|298346086|ref|YP_003718773.1| CoA-disulfide reductase [Mobiluncus curtisii ATCC 43063]
 gi|298236147|gb|ADI67279.1| coA-disulfide reductase [Mobiluncus curtisii ATCC 43063]
          Length = 557

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI 34
           +VIGGG  G EAA   A+ G +T ++
Sbjct: 151 LVIGGGFIGIEAAEALARRGINTTIV 176


>gi|170576772|ref|XP_001893760.1| all-trans-13,14-dihydroretinol saturase [Brugia malayi]
 gi|158600046|gb|EDP37404.1| all-trans-13,14-dihydroretinol saturase, putative [Brugia malayi]
          Length = 326

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          ++N  +DVIVIG G +G   A + A  G    ++   
Sbjct: 43 IVNEKWDVIVIGSGLSGLTVAKILATAGRKVLVLEQH 79


>gi|160947580|ref|ZP_02094747.1| hypothetical protein PEPMIC_01515 [Parvimonas micra ATCC 33270]
 gi|158446714|gb|EDP23709.1| hypothetical protein PEPMIC_01515 [Parvimonas micra ATCC 33270]
          Length = 309

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD I+IG G AG  A   AA+    T +I
Sbjct: 2  YDCIIIGAGPAGISAGIYAARASMKTIII 30


>gi|124027680|ref|YP_001013000.1| NADH oxidase [Hyperthermus butylicus DSM 5456]
 gi|123978374|gb|ABM80655.1| NADH oxidase [Hyperthermus butylicus DSM 5456]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           VIVIG G+ G EAA   A LG    ++ H +  I S S +P I    +    
Sbjct: 154 VIVIGAGYTGIEAADNIALLGRRVVIV-HSSKRILSRSLDPDIAEKVEERAK 204


>gi|37676180|ref|NP_936576.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          vulnificus YJ016]
 gi|46397421|sp|Q7MF00|GLPB_VIBVY RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Short=Anaerobic G-3-P dehydrogenase subunit
          B; Short=Anaerobic G3Pdhase B
 gi|37200721|dbj|BAC96546.1| anaerobic glycerol-3-phosphate dehydrogenase [Vibrio vulnificus
          YJ016]
          Length = 438

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +YD+ VIGGG AG  AA  A + G  T LI+ 
Sbjct: 3  NYDIAVIGGGIAGYCAALNAIEAGKKTVLISQ 34


>gi|27366474|ref|NP_762001.1| anaerobic glycerol-3-phosphate dehydrogenase subunit B [Vibrio
          vulnificus CMCP6]
 gi|46397424|sp|Q8D7Y4|GLPB_VIBVU RecName: Full=Anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Short=Anaerobic G-3-P dehydrogenase subunit
          B; Short=Anaerobic G3Pdhase B
 gi|27358040|gb|AAO06991.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit [Vibrio
          vulnificus CMCP6]
          Length = 438

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +YD+ VIGGG AG  AA  A + G  T LI+ 
Sbjct: 3  NYDIAVIGGGIAGYCAALNAIEAGKKTVLISQ 34


>gi|322369966|ref|ZP_08044528.1| hypothetical protein ZOD2009_10765 [Haladaptatus paucihalophilus
           DX253]
 gi|320550302|gb|EFW91954.1| hypothetical protein ZOD2009_10765 [Haladaptatus paucihalophilus
           DX253]
          Length = 410

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 5/154 (3%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
           ++  +DVI+ G G AG + A   A+ G    ++  +         N +  G     ++  
Sbjct: 1   MSDHFDVIIAGAGPAGAQCARDLAQRGYDVVVLEAEKEDTFPRQSNKSTAGTFSS-MMAA 59

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
               D ++    D   +     N     A  G   +     ++  +  +   +       
Sbjct: 60  FGIPDDVVMNFTD--NVVLESPNEHFVQAQPGAVLEF--ADFKRFLVADGRDEGAEYWFD 115

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             V+      N I  +    +  +    ++  TG
Sbjct: 116 ARVSKPIMSGNEIVGVRYAGDQEVYGDIIIDATG 149


>gi|314936150|ref|ZP_07843497.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654769|gb|EFS18514.1| pyridine nucleotide-disulfide oxidoreductase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 418

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI--- 62
           Y  I+IGGG +G  AA  A++  +   L          +     I G G+ ++   +   
Sbjct: 2   YQTIIIGGGPSGLMAAVAASENSSKVLL----IEKKKGLGRKLKISGGGRCNVTNRLPYE 57

Query: 63  ----DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD---RELYRLAMQREILSQ- 114
               +      G+   +   +F   ++ +    RG + + +   R        ++I+   
Sbjct: 58  EIIKNIPGN--GKFLYSPFSKFDNESIIEFFESRGIKLKEEDHGRMFPVSNKSQDIVDTL 115

Query: 115 ------ENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                  N+++ +  V    ++ +    +  QD       TV++ TG
Sbjct: 116 VNTIKNNNVEIKEETVVNDISKNDQSFIVKTQDG-EFESKTVIIATG 161


>gi|312134606|ref|YP_004001944.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor owensensis
          OL]
 gi|311774657|gb|ADQ04144.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor owensensis
          OL]
          Length = 454

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+I+IGGG AG  AA  A+K G  T LI
Sbjct: 2  KYDLIIIGGGPAGYLAAERASKGGLKTLLI 31


>gi|304390155|ref|ZP_07372109.1| CoA-disulfide reductase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326637|gb|EFL93881.1| CoA-disulfide reductase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 557

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALI 34
           +VIGGG  G EAA   A+ G +T ++
Sbjct: 151 LVIGGGFIGIEAAEALARRGINTTIV 176


>gi|292489992|ref|YP_003532884.1| hypothetical protein EAMY_3531 [Erwinia amylovora CFBP1430]
 gi|292901013|ref|YP_003540382.1| FAD-dependent oxidoreductase [Erwinia amylovora ATCC 49946]
 gi|291200861|emb|CBJ47996.1| putative FAD-dependent oxidoreductase [Erwinia amylovora ATCC
          49946]
 gi|291555431|emb|CBA23878.1| Uncharacterized protein yhiN [Erwinia amylovora CFBP1430]
 gi|312174180|emb|CBX82433.1| Uncharacterized protein yhiN [Erwinia amylovora ATCC BAA-2158]
          Length = 394

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
           ++DVIVIG G AG   AA A + G    L                + G G+ +
Sbjct: 2  ETFDVIVIGAGAAGLFCAAHAGQKGRRVLL----IDNGKKAGRKILMSGGGRCN 51


>gi|312115055|ref|YP_004012651.1| glutathione-disulfide reductase [Rhodomicrobium vannielii ATCC
          17100]
 gi|311220184|gb|ADP71552.1| glutathione-disulfide reductase [Rhodomicrobium vannielii ATCC
          17100]
          Length = 475

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++   YD+ VIGGG  G  +A +AAKLG  TA+
Sbjct: 19 LMTFDYDLFVIGGGSGGVRSARLAAKLGVRTAI 51


>gi|315498042|ref|YP_004086846.1| fad dependent oxidoreductase [Asticcacaulis excentricus CB 48]
 gi|315416054|gb|ADU12695.1| FAD dependent oxidoreductase [Asticcacaulis excentricus CB 48]
          Length = 427

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV +IGGG+ G  AA   A+ G    L+         +    +    G+ H  + +D   
Sbjct: 34  DVAIIGGGYTGLGAALELARKGVCVTLLEG-----AEIGSGASGRNGGQVHTGQRVDPQT 88

Query: 67  GLMGRVADAAGIQFRVLNVKKG 88
                 ADAA   + +    K 
Sbjct: 89  LESQLGADAARELWEMAETAKA 110


>gi|237795219|ref|YP_002862771.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum Ba4 str. 657]
 gi|229264142|gb|ACQ55175.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 140/428 (32%), Gaps = 79/428 (18%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      L+      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILVERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171
              N+ ++  + +     E + I  +  +    I+    +L TG    GV +        
Sbjct: 119 INRNVKILLNKRITRIYKEDSNIKYVETEKGEKIKGDYFILCTG----GVSYPQTGSEGD 174

Query: 172 GRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--ERLIPFSFM 229
           G      +  L ++  +       L+T      D + +     E +  D   + +  +F 
Sbjct: 175 GH---KIAKKLGHNIKELKPSLVPLETKEEWVKDLQGLALKNVEIRIIDSKNKTLHKNFG 231

Query: 230 TDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR----- 284
               T+  I   I  T   +  I  +N+K        I          ++++I +     
Sbjct: 232 EMLFTHFGISGPIVLT--ASSVIDRDNLKVL------INLKPALSSNDLDERIQKDFKKY 283

Query: 285 ----FGERNGHQIFLEPEGLNTDV--VYPNGISTALPEEIQHQFIRTIPGL--------- 329
               F       +      +  ++  + PN    ++ +E +   +  +  L         
Sbjct: 284 CNKDFSNSLNDLLPKRLINIIINLSKINPNKKVNSITKEERKSLVYLLQNLPLTVRGKRP 343

Query: 330 -EKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAG--------------QINGTTG 374
            ++  +   G  +    I+P     T+++K ++ L+ AG              QI  +TG
Sbjct: 344 IKEAIVTSGGVDVLN--IDP----STMKSKIVNNLYFAGELIDVDAFTGGFNIQIALSTG 397

Query: 375 YEEAAAQG 382
           Y      G
Sbjct: 398 YLAGLKVG 405


>gi|227830659|ref|YP_002832439.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          L.S.2.15]
 gi|229579566|ref|YP_002837965.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          Y.G.57.14]
 gi|229585204|ref|YP_002843706.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          M.16.27]
 gi|238620163|ref|YP_002914989.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          M.16.4]
 gi|284998186|ref|YP_003419953.1| thiazole biosynthesis enzyme [Sulfolobus islandicus L.D.8.5]
 gi|259517439|sp|C3N6N6|RUBPS_SULIA RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|259517445|sp|C4KIA7|RUBPS_SULIK RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|259517451|sp|C3MQY1|RUBPS_SULIL RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|259517462|sp|C3N749|RUBPS_SULIY RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|227457107|gb|ACP35794.1| thiazole biosynthesis enzyme [Sulfolobus islandicus L.S.2.15]
 gi|228010281|gb|ACP46043.1| thiazole biosynthesis enzyme [Sulfolobus islandicus Y.G.57.14]
 gi|228020254|gb|ACP55661.1| thiazole biosynthesis enzyme [Sulfolobus islandicus M.16.27]
 gi|238381233|gb|ACR42321.1| thiazole biosynthesis enzyme [Sulfolobus islandicus M.16.4]
 gi|284446081|gb|ADB87583.1| thiazole biosynthesis enzyme [Sulfolobus islandicus L.D.8.5]
 gi|323475024|gb|ADX85630.1| thiazole biosynthesis enzyme [Sulfolobus islandicus REY15A]
 gi|323477755|gb|ADX82993.1| thiazole biosynthesis enzyme [Sulfolobus islandicus HVE10/4]
          Length = 267

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++G G +G  AA   AK G  T + 
Sbjct: 32 DVVIVGAGPSGLSAAYYLAKAGLKTLVF 59


>gi|153807355|ref|ZP_01960023.1| hypothetical protein BACCAC_01633 [Bacteroides caccae ATCC 43185]
 gi|149129717|gb|EDM20929.1| hypothetical protein BACCAC_01633 [Bacteroides caccae ATCC 43185]
          Length = 553

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 53/177 (29%), Gaps = 29/177 (16%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALIT---------HKTSTIGSMSC-----NPAIGGL 53
           VIV+G G  G  AA    +LG    ++             + I          N + G  
Sbjct: 85  VIVVGAGPGGLFAALRLIELGLRPVIVERGKDVRERKKDLAQISREHTVNPESNYSFGEG 144

Query: 54  GKGHLVREIDALDGLMGRVADAAGIQFRVLNV-KKGPAVRGPRTQADRELYRLAMQREIL 112
           G G         DG +   +   G   ++ NV  +  A       A   +    + R I 
Sbjct: 145 GAG------AYSDGKLYTRSKKRGNVDKIFNVFCQHGASTAILADAHPHIGTDKLPRVIE 198

Query: 113 SQENLDV-------IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
           +  N  +        +  +     E N I  I            V+L TG   R V 
Sbjct: 199 NMRNTILECGGEVHFRTRMDALIIENNEIKGIETNTGKTFLGP-VILATGHSARDVY 254


>gi|146298439|ref|YP_001193030.1| succinate dehydrogenase flavoprotein subunit [Flavobacterium
          johnsoniae UW101]
 gi|146152857|gb|ABQ03711.1| succinate dehydrogenase or fumarate reductase, flavoprotein
          subunit [Flavobacterium johnsoniae UW101]
          Length = 666

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R+ D+IV+G G AG  AAA  A+LG +     
Sbjct: 31 KRNLDIIVVGTGLAGGSAAATLAELGYNVKAFC 63


>gi|119896950|ref|YP_932163.1| glutathione-disulfide reductase [Azoarcus sp. BH72]
 gi|119669363|emb|CAL93276.1| probable glutathione-disulfide reductase [Azoarcus sp. BH72]
          Length = 445

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 36/214 (16%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITH-----KTSTIGSMSCNPAIGGLGKGHLV 59
            +D +VIGGG  G   A  AA+ GA   LI            G +         G GH +
Sbjct: 3   HFDYLVIGGGSGGVATARRAAEYGARVLLIESARLGGTCVNAGCVPKKLMWHAAGIGHAL 62

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
                         DAA   FRV  ++   A    R + D   Y   +   +L +  + V
Sbjct: 63  H-------------DAAAFGFRVDGLRFDWAAL-KRGRDDFVAYLNGVYASLLDKAGVSV 108

Query: 120 IQGEVAGFNTEKNIISS-------IVMQDNSMIR------CSTVVLTTGTFLRGVIHIGK 166
           ++G     +     +         IV+      R       +  + + G F    +    
Sbjct: 109 VRGHARFVDAHTVEVGGQRYSAPHIVIATGGEPRVPDSPGAALGITSDGFFALDHLPART 168

Query: 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGT 200
           + +  G +    +  L         +   L  G 
Sbjct: 169 IVVGGGYI----AVELAGVLAALGSEVTMLVRGE 198


>gi|119896508|ref|YP_931721.1| FAD dependent oxidoreductase family protein [Azoarcus sp. BH72]
 gi|119668921|emb|CAL92834.1| FAD dependent oxidoreductase family protein [Azoarcus sp. BH72]
          Length = 430

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  DV ++GGG  G  AA   AK GAS  ++
Sbjct: 23 KRADVAIVGGGFTGLSAALACAKRGASVVVL 53


>gi|110802294|ref|YP_699718.1| putative oxidoreductase [Clostridium perfringens SM101]
 gi|110682795|gb|ABG86165.1| pyridine nucleotide-disulphide oxidoreductase [Clostridium
           perfringens SM101]
          Length = 413

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI 62
           + +IGGG AG  AA + AK G    +       IG +       G+ +  L REI
Sbjct: 114 IAIIGGGPAGITAAFILAKKGYQVTIFDEN-DKIGGVLRY----GIPEFRLSREI 163


>gi|73541733|ref|YP_296253.1| dihydrolipoamide dehydrogenase [Ralstonia eutropha JMP134]
 gi|72119146|gb|AAZ61409.1| dihydrolipoamide dehydrogenase [Ralstonia eutropha JMP134]
          Length = 474

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +++ +DV+VIG G  G  AA  A +LG + A     
Sbjct: 1  MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGN 36


>gi|15897366|ref|NP_341971.1| ribulose-1,5-biphosphate synthetase [Sulfolobus solfataricus P2]
 gi|284173293|ref|ZP_06387262.1| ribulose-1,5-biphosphate synthetase [Sulfolobus solfataricus
          98/2]
 gi|74542368|sp|Q97ZY5|RUBPS_SULSO RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|13813589|gb|AAK40761.1| Thiazole biosynthetic enzyme [Sulfolobus solfataricus P2]
 gi|261602042|gb|ACX91645.1| thiazole biosynthesis enzyme [Sulfolobus solfataricus 98/2]
          Length = 267

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+++G G +G  AA   AK G  T + 
Sbjct: 32 DVVIVGAGPSGLSAAYYLAKAGLKTLVF 59


>gi|15614411|ref|NP_242714.1| hypothetical protein BH1848 [Bacillus halodurans C-125]
 gi|10174466|dbj|BAB05567.1| BH1848 [Bacillus halodurans C-125]
          Length = 498

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          SYDV+VIG G  G  AA   A+ G S  ++
Sbjct: 9  SYDVVVIGAGMGGLSAATFLAQEGYSVLVL 38


>gi|88798769|ref|ZP_01114352.1| glutathione reductase [Reinekea sp. MED297]
 gi|88778532|gb|EAR09724.1| glutathione reductase [Reinekea sp. MED297]
          Length = 460

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YD++VIG G  G  AA ++A+ GA  A+I
Sbjct: 1  MKYDYDLLVIGAGSGGVRAARMSAQKGAKVAVI 33


>gi|124268286|ref|YP_001022290.1| glutamate synthase subunit beta [Methylibium petroleiphilum PM1]
 gi|124261061|gb|ABM96055.1| glutamate synthase (NADH) small subunit [Methylibium petroleiphilum
           PM1]
          Length = 488

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V V+G G AG  AA   A+ G +  L       IG +
Sbjct: 146 VAVVGSGPAGMAAAQQLARAGHAVTLFEKN-DRIGGL 181


>gi|332293610|ref|YP_004432219.1| dihydrolipoamide dehydrogenase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171696|gb|AEE20951.1| dihydrolipoamide dehydrogenase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 465

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 20/157 (12%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
           SYDV VIG G  G  AA   A+LG  TA+I  K ST+G    ++ C P+   L   H   
Sbjct: 3   SYDVAVIGSGPGGYVAAIRCAQLGMKTAIIE-KYSTLGGTCLNVGCIPSKALLDSSHHYE 61

Query: 61  E-IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDV 119
           + I   +     V + +    ++++ K+G      +               ++ + N+DV
Sbjct: 62  DAIKHFEDHGIDVGEVSLNLEKMISRKQGVVDTTTKG-----------IEFLMGKNNIDV 110

Query: 120 IQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            QG  +  +     I+    + N  I     ++ TG+
Sbjct: 111 YQGVGSFKDATHINIAG---EKNETIEAKNTIIATGS 144


>gi|330951414|gb|EGH51674.1| hypothetical protein PSYCIT7_08509 [Pseudomonas syringae Cit 7]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGGKVMLIDH 34


>gi|329935030|ref|ZP_08285044.1| putative FAD-binding dehydrogenase [Streptomyces
          griseoaurantiacus M045]
 gi|329305275|gb|EGG49132.1| putative FAD-binding dehydrogenase [Streptomyces
          griseoaurantiacus M045]
          Length = 557

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DVIV+G G AG  AA      G   AL+  
Sbjct: 4  DVIVVGAGLAGLVAAHELTSRGRRVALVEQ 33


>gi|319942695|ref|ZP_08017001.1| radical SAM domain-containing protein [Sutterella wadsworthensis
          3_1_45B]
 gi|319803705|gb|EFW00646.1| radical SAM domain-containing protein [Sutterella wadsworthensis
          3_1_45B]
          Length = 510

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
           +  YDV+++G G AG   A   A+   S  L       +  +  N  I G
Sbjct: 36 FDEQYDVVIVGSGFAGLTCALRCAEKNYSVLL----IEKMTILGGNSLICG 82


>gi|297568656|ref|YP_003690000.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurivibrio alkaliphilus AHT2]
 gi|296924571|gb|ADH85381.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Desulfurivibrio alkaliphilus AHT2]
          Length = 478

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M    YD+ VIGGG AG   A+ AA+LG  T L+
Sbjct: 1  MSKFDYDLGVIGGGAAGLTVASGAAQLGVKTLLV 34


>gi|269127341|ref|YP_003300711.1| alanine dehydrogenase [Thermomonospora curvata DSM 43183]
 gi|268312299|gb|ACY98673.1| alanine dehydrogenase [Thermomonospora curvata DSM 43183]
          Length = 371

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           V VIGGG AG  AA +AA +GA   ++      +
Sbjct: 171 VTVIGGGVAGLNAAQIAAGMGAEVTVLDIDVDRL 204


>gi|169334370|ref|ZP_02861563.1| hypothetical protein ANASTE_00769 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259087|gb|EDS73053.1| hypothetical protein ANASTE_00769 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 306

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +YDVI+IG G AG  A   A++   +T +I
Sbjct: 2  NYDVIIIGAGPAGLSAGLYASRSTLNTLII 31


>gi|163853148|ref|YP_001641191.1| NADH:flavin oxidoreductase/NADH oxidase [Methylobacterium
           extorquens PA1]
 gi|163664753|gb|ABY32120.1| NADH:flavin oxidoreductase/NADH oxidase [Methylobacterium
           extorquens PA1]
          Length = 680

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           V+VIG G  G EAA V A+ G +  L    
Sbjct: 392 VVVIGAGPGGLEAARVCAERGHAVVLFEKN 421


>gi|229581769|ref|YP_002840168.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          Y.N.15.51]
 gi|259517458|sp|C3NGI6|RUBPS_SULIN RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|228012485|gb|ACP48246.1| thiazole biosynthesis enzyme [Sulfolobus islandicus Y.N.15.51]
          Length = 267

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV+++G G +G  AA   AK G  T +   + S
Sbjct: 32 DVVIVGAGPSGLSAAYYLAKAGLKTLVFERRLS 64


>gi|134094982|ref|YP_001100057.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
          [Herminiimonas arsenicoxydans]
 gi|133738885|emb|CAL61932.1| succinate dehydrogenase, flavoprotein subunit [Herminiimonas
          arsenicoxydans]
          Length = 592

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +R +D I+IG G +G  A+   A+ G + A+++
Sbjct: 10 SRHFDAIIIGAGGSGMRASLQLAEAGLNVAVLS 42


>gi|51245988|ref|YP_065872.1| succinate dehydrogenase flavoprotein subunit [Desulfotalea
          psychrophila LSv54]
 gi|50877025|emb|CAG36865.1| probable succinate dehydrogenase, flavoprotein subunit
          [Desulfotalea psychrophila LSv54]
          Length = 642

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          R + VIV+G G AG  AA   A+ G        +
Sbjct: 32 RKFSVIVVGTGLAGASAAGTLAEQGYQVKAFCIQ 65


>gi|15964460|ref|NP_384813.1| hypothetical protein SMc00763 [Sinorhizobium meliloti 1021]
 gi|307308402|ref|ZP_07588106.1| HI0933 family protein [Sinorhizobium meliloti BL225C]
 gi|15073637|emb|CAC45279.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306901005|gb|EFN31613.1| HI0933 family protein [Sinorhizobium meliloti BL225C]
          Length = 394

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          +    DV++IG G AG   A  A K G    +I H
Sbjct: 1  MAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDH 35


>gi|93004940|ref|YP_579377.1| succinate dehydrogenase flavoprotein subunit [Psychrobacter
          cryohalolentis K5]
 gi|92392618|gb|ABE73893.1| succinate dehydrogenase subunit A [Psychrobacter cryohalolentis
          K5]
          Length = 616

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          +YD +++GGG +G  A+   A+ G   A++T
Sbjct: 16 NYDAVIVGGGGSGMRASLHLAEAGMKVAVLT 46


>gi|116672050|ref|YP_832983.1| amine oxidase [Arthrobacter sp. FB24]
 gi|116612159|gb|ABK04883.1| amine oxidase [Arthrobacter sp. FB24]
          Length = 435

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          M N  YD +V+G G AG  AA   ++ G +  ++  +   IG
Sbjct: 1  MGNEVYDAVVVGAGFAGLTAARELSRQGLAVHIVEAR-DRIG 41


>gi|310814637|ref|YP_003962601.1| dihydrolipoamide dehydrogenase [Ketogulonicigenium vulgare Y25]
 gi|308753372|gb|ADO41301.1| dihydrolipoamide dehydrogenase [Ketogulonicigenium vulgare Y25]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
          S+D+IVIG G  G   A  AA+LG  TA++  +  T+G    ++ C P+   L   H + 
Sbjct: 3  SFDLIVIGAGPGGYVCAIRAAQLGLKTAVVEGR-ETLGGTCLNVGCIPSKALLHATHSLH 61

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKG 88
          E       MG    A  + +  +   KG
Sbjct: 62 EAQHNFDKMGLEGAAPTVNWDKMQAYKG 89


>gi|301606446|ref|XP_002932844.1| PREDICTED: amine oxidase [flavin-containing] A-like [Xenopus
          (Silurana) tropicalis]
          Length = 568

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YDVIVIGGG +G  AA +  + G +  ++
Sbjct: 49 MDNKYDVIVIGGGISGLTAAKLLVESGLNVIVL 81


>gi|269215974|ref|ZP_06159828.1| putative FAD binding domain protein [Slackia exigua ATCC 700122]
 gi|269130233|gb|EEZ61311.1| putative FAD binding domain protein [Slackia exigua ATCC 700122]
          Length = 557

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45
           DV VIG G +G  AA  AA+ G S  LI  KT TIG  S
Sbjct: 74  DVAVIGAGCSGINAAVRAAQEGLSVVLIE-KTDTIGGAS 111


>gi|254483630|ref|ZP_05096853.1| putative FAD binding domain protein [marine gamma proteobacterium
          HTCC2148]
 gi|214036139|gb|EEB76823.1| putative FAD binding domain protein [marine gamma proteobacterium
          HTCC2148]
          Length = 404

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI-THKTSTI 41
          M  + +DV++IG G AG   A   A  G S AL+        
Sbjct: 1  MPAQKFDVVIIGAGIAGSALAVALAGQGLSLALVEAQSLERK 42


>gi|167772842|ref|ZP_02444895.1| hypothetical protein ANACOL_04230 [Anaerotruncus colihominis DSM
          17241]
 gi|167664775|gb|EDS08905.1| hypothetical protein ANACOL_04230 [Anaerotruncus colihominis DSM
          17241]
          Length = 308

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
            YDVI+IG G AG  AA    + G    ++
Sbjct: 2  EQYDVIIIGAGPAGLTAAIYVQRAGLRALVL 32


>gi|163742828|ref|ZP_02150212.1| hypothetical protein RG210_11940 [Phaeobacter gallaeciensis 2.10]
 gi|161383792|gb|EDQ08177.1| hypothetical protein RG210_11940 [Phaeobacter gallaeciensis 2.10]
          Length = 505

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKT 38
           +D IVIG G+AG  AAA   + G    L+  H  
Sbjct: 3  DFDAIVIGAGNAGLSAAAGMQRKGLRILLLERHNI 37


>gi|162457074|ref|YP_001619442.1| pyridine nucleotide-disulphide oxidoreductase,class II [Sorangium
           cellulosum 'So ce 56']
 gi|161167656|emb|CAN98961.1| pyridine nucleotide-disulphide oxidoreductase,class II [Sorangium
           cellulosum 'So ce 56']
          Length = 307

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 44/150 (29%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YD I++GGG AG  AA +  +      +                  G  + H  RE+   
Sbjct: 11  YDAIIVGGGPAGLSAALILGRCRRRVLVCD---------------SGQYRNHAAREMHGF 55

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
                               + G A    R           + RE L+   +++ +  V 
Sbjct: 56  ------------------LSRDGIAPSELR----------RIAREQLAPYGVEIRESAVT 87

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                      + ++    +RC  ++L TG
Sbjct: 88  DVRRGARRFE-VTLEGGERLRCRKLLLATG 116


>gi|150375967|ref|YP_001312563.1| hypothetical protein Smed_3818 [Sinorhizobium medicae WSM419]
 gi|150030514|gb|ABR62630.1| HI0933 family protein [Sinorhizobium medicae WSM419]
          Length = 404

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
          +S ++ +IGGG AG  AA + ++ G +  +       + S +    + G    ++     
Sbjct: 2  QSSEIAIIGGGPAGLMAAEILSRSGHAVTIY----EAMPSAARKFLLAGKSGLNITHSEH 57

Query: 64 ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQAD 99
          +    M R ADA+      L+     A +  R  AD
Sbjct: 58 S-KAFMQRFADASARLQPALDA---FAPKDVRAWAD 89


>gi|75907719|ref|YP_322015.1| geranylgeranyl reductase [Anabaena variabilis ATCC 29413]
 gi|75701444|gb|ABA21120.1| Geranylgeranyl reductase [Anabaena variabilis ATCC 29413]
          Length = 418

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          V V+G G AG  AA   AK G  T L   K   
Sbjct: 17 VAVVGSGPAGSSAAETLAKAGIETYLFERKLDN 49


>gi|33603588|ref|NP_891148.1| putative oxidoreductase [Bordetella bronchiseptica RB50]
 gi|33577713|emb|CAE34978.1| putative oxidoreductase [Bordetella bronchiseptica RB50]
          Length = 300

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD +++GGG AG   A   A+LG +  L+
Sbjct: 1  MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLV 33


>gi|33598636|ref|NP_886279.1| putative oxidoreductase [Bordetella parapertussis 12822]
 gi|33574765|emb|CAE39425.1| putative oxidoreductase [Bordetella parapertussis]
          Length = 300

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD +++GGG AG   A   A+LG +  L+
Sbjct: 1  MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLV 33


>gi|33594175|ref|NP_881819.1| putative oxidoreductase [Bordetella pertussis Tohama I]
 gi|33564250|emb|CAE43541.1| putative oxidoreductase [Bordetella pertussis Tohama I]
 gi|332383590|gb|AEE68437.1| putative oxidoreductase [Bordetella pertussis CS]
          Length = 300

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + + YD +++GGG AG   A   A+LG +  L+
Sbjct: 1  MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLV 33


>gi|32491170|ref|NP_871424.1| succinate dehydrogenase flavoprotein subunit [Wigglesworthia
          glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166377|dbj|BAC24567.1| sdhA [Wigglesworthia glossinidia endosymbiont of Glossina
          brevipalpis]
          Length = 588

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          ++ +++DVIVIG G +G  AA   AK  +S ALI+
Sbjct: 3  ILKKTFDVIVIGSGGSGMRAALEIAKNKSSCALIS 37


>gi|332799543|ref|YP_004461042.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Tepidanaerobacter sp. Re1]
 gi|332697278|gb|AEE91735.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Tepidanaerobacter sp. Re1]
          Length = 364

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          ++ D+ VIG G AG   A  AAK GA   ++    
Sbjct: 2  KTTDIAVIGAGPAGLSCAVEAAKAGAKVTVLDENL 36


>gi|332284271|ref|YP_004416182.1| dihydrolipoamide dehydrogenase [Pusillimonas sp. T7-7]
 gi|330428224|gb|AEC19558.1| dihydrolipoamide dehydrogenase [Pusillimonas sp. T7-7]
          Length = 581

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-------SCNPAIGGLGK 55
           + SYDV+V+G G  G  AA  AA LG S  L+        ++        C P+   L  
Sbjct: 112 DSSYDVLVLGAGPGGYSAAFRAADLGLSVVLV----ERYATLGGVCLNVGCIPSKALLHI 167

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87
             +V E  +L    G   D   I    L   K
Sbjct: 168 AAVVEEAQSL-SAHGISFDKPKIDIDALRAYK 198


>gi|306841779|ref|ZP_07474465.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Brucella sp. BO2]
 gi|306288184|gb|EFM59571.1| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
           [Brucella sp. BO2]
          Length = 417

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 25/171 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI---THKTSTIGSMSCNPAIG--GLGKGHLVRE 61
           D+++ GGG AG  AA      G  T L+   T KT    +    PAI            E
Sbjct: 15  DIVISGGGPAGMMAALALGARGYHTVLLGPETDKTDRRTTALMMPAIRFLEQIGVWAAIE 74

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
            +A      R+ DA         + + PAV    ++ D   +   +   +L+ +   + +
Sbjct: 75  PEAAPLQSMRIVDATR------RLIRSPAVMFRASEIDEIAFGYNIPNAVLNAK---LAE 125

Query: 122 GEVAGFNTEKNII-----------SSIVMQDNSMIRCSTVVLTTGTFLRGV 161
              A  N ++  +            ++ ++    +    +V   G      
Sbjct: 126 AVAASRNIQRITVPAIEYRPNGDHVTVTLKGGDTLHTRLLVAADGRNSGAR 176


>gi|296446652|ref|ZP_06888593.1| dihydrolipoamide dehydrogenase [Methylosinus trichosporium OB3b]
 gi|296255880|gb|EFH02966.1| dihydrolipoamide dehydrogenase [Methylosinus trichosporium OB3b]
          Length = 479

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV+VIGGG  G  AA  +A+LG  TA++
Sbjct: 3  DYDVLVIGGGPGGYVAAIRSAQLGLKTAVV 32


>gi|295106597|emb|CBL04140.1| Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 577

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSMSCNPA--IGGLGKGHLVRE 61
           DV+VIG G +G   A  AA+ GA+  ++    H     GS+    +      G    V E
Sbjct: 81  DVVVIGAGFSGLCCALAAAENGANVVMLERMDHVIGRGGSIYAMNSKLTKEKGYECSVEE 140

Query: 62  I-DALDGLMGRVADAAGIQFRVL-NVKKGPAV 91
           +      +MG  +     +  +L   + G A+
Sbjct: 141 VAQRYKRMMGYHSYRVDGRKWMLHFNRSGEAM 172


>gi|291000346|ref|XP_002682740.1| predicted protein [Naegleria gruberi]
 gi|284096368|gb|EFC49996.1| predicted protein [Naegleria gruberi]
          Length = 595

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
          +D+IVIGGG  G  AA  A   G   ALI   
Sbjct: 54 FDIIVIGGGSVGSSAALDATSRGLKVALIERN 85


>gi|255008296|ref|ZP_05280422.1| putative pyridine nucleotide-disulfide oxidoreductase [Bacteroides
           fragilis 3_1_12]
 gi|313146017|ref|ZP_07808210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134784|gb|EFR52144.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 458

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           + YD I+IG G  G    A  AK G   ALI       G     P I  +    L+ E +
Sbjct: 2   KQYDAIIIGFGKGGKTLTAELAKRGWKVALIERSAMMYG--GTCPNIACVPTKRLIHEAE 59

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123
            +  L     +     ++    +K       R           M  ++ S  N+ +  G 
Sbjct: 60  KVSWLYPTSYEKQAEAYKAAIARKNEMTAASRA---------NMFDKLSSLPNVTIYTGM 110

Query: 124 VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
            +     K+++   +  +   ++   + + TG+
Sbjct: 111 AS--FVSKDVVKVTLPDEVIELQGKKIFINTGS 141


>gi|300771208|ref|ZP_07081084.1| FAD-dependent oxidoreductase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761878|gb|EFK58698.1| FAD-dependent oxidoreductase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 396

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 327 PGLEKVNIIRPGYAIEYDYINPKELFP-TLETKKISGLFLAGQINGTTGY 375
            G +K  ++R G       ++  EL   TLE+K+I GL+  G+    TG+
Sbjct: 334 KGYDKAEVMRGG-------VDTNELNSSTLESKRIPGLYFGGEAVDVTGW 376


>gi|218679149|ref|ZP_03527046.1| dihydrolipoamide dehydrogenase [Rhizobium etli CIAT 894]
          Length = 246

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  SYDVI+IG G  G  AA  A++LG  TA++
Sbjct: 1  MAESYDVIIIGSGPGGYVAAIRASQLGLKTAIV 33


>gi|254440156|ref|ZP_05053650.1| oxidoreductase, FAD/FMN-binding family [Octadecabacter antarcticus
           307]
 gi|198255602|gb|EDY79916.1| oxidoreductase, FAD/FMN-binding family [Octadecabacter antarcticus
           307]
          Length = 708

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 13/91 (14%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
           ++++G G AG EAA VAA+ G    +               A    G   L+        
Sbjct: 416 IVIVGAGPAGLEAARVAAERGHEVTVFE-------------AAAEPGGQVLLTSQSPRRR 462

Query: 68  LMGRVADAAGIQFRVLNVKKGPAVRGPRTQA 98
            M  + D    Q    +V             
Sbjct: 463 EMIGIIDWRMNQCAARDVTFNFNAWAEVADV 493


>gi|163759647|ref|ZP_02166732.1| glutathione reductase [Hoeflea phototrophica DFL-43]
 gi|162283244|gb|EDQ33530.1| glutathione reductase [Hoeflea phototrophica DFL-43]
          Length = 462

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M N  YD+ VIGGG  G  AA +AA LG   A+
Sbjct: 1  MSNFDYDLFVIGGGSGGVRAARLAAGLGKKVAI 33


>gi|13241962|gb|AAK16487.1|AF329478_2 sarcosine oxidase subunit B [Arthrobacter sp. 1IN]
          Length = 405

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  +         ++  +D+IQ  EV GF  +   ++ +       I   
Sbjct: 162 ATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRG-TIHAG 220

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAG---RMGDSPSNSLFNSFMK 188
            V       L G  H   L   AG    +   P  +L +   +
Sbjct: 221 KVA------LAGAGHSSVLAELAGFELPIQSHPLQALVSELFE 257


>gi|2507122|sp|P40875|SOXB_CORS1 RecName: Full=Sarcosine oxidase subunit beta; Short=Sarcosine
           oxidase subunit B
 gi|2127436|pir||I40887 sarcosine oxidase (EC 1.5.3.1) beta chain [validated] -
           Corynebacterium sp
 gi|927589|gb|AAC43459.1| sarcosine oxidase beta subunit [Corynebacterium sp.]
          Length = 405

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 90  AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCS 148
           A   PR    +  +         ++  +D+IQ  EV GF  +   ++ +       I   
Sbjct: 162 ATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRG-TIHAG 220

Query: 149 TVVLTTGTFLRGVIHIGKLKIPAG---RMGDSPSNSLFNSFMK 188
            V       L G  H   L   AG    +   P  +L +   +
Sbjct: 221 KVA------LAGAGHSSVLAELAGFELPIQSHPLQALVSELFE 257


>gi|89071272|ref|ZP_01158443.1| hypothetical protein OG2516_05088 [Oceanicola granulosus
          HTCC2516]
 gi|89043202|gb|EAR49435.1| hypothetical protein OG2516_05088 [Oceanicola granulosus
          HTCC2516]
          Length = 430

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          DV V+G G+ G  AA   A  G    ++    +  G+   N
Sbjct: 38 DVAVVGAGYTGLSAALTLAGRGYKVVVLEAHRAGFGASGRN 78


>gi|295706808|ref|YP_003599883.1| succinate dehydrogenase, flavoprotein subunit [Bacillus megaterium
           DSM 319]
 gi|294804467|gb|ADF41533.1| succinate dehydrogenase, flavoprotein subunit [Bacillus megaterium
           DSM 319]
          Length = 595

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 53/176 (30%), Gaps = 36/176 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAESGKQVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVV 151
                    +   +  Q    V + EVAG  T  E       V+ D    R  +  
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRYEVAGLVTKYEGWEFLGAVLDDERSCRGISAQ 177


>gi|294501460|ref|YP_003565160.1| succinate dehydrogenase, flavoprotein subunit [Bacillus megaterium
           QM B1551]
 gi|294351397|gb|ADE71726.1| succinate dehydrogenase, flavoprotein subunit [Bacillus megaterium
           QM B1551]
          Length = 595

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 53/176 (30%), Gaps = 36/176 (20%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGKGHLVRE- 61
           +IV+GGG AG  A    A+ G    L +          C     N A+   G+G    E 
Sbjct: 6   IIVVGGGLAGLMATIKIAESGKQVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65

Query: 62  --IDALDG----------LMGRVA-------DAAGIQFRV-----LNVKKGPAVRGPRTQ 97
                  G           M   A       D  G+ F       L+ ++    +  RT 
Sbjct: 66  FDDTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTQHHRTA 125

Query: 98  ADRELYRLAMQREILSQENLDVIQGEVAGFNT--EKNIISSIVMQDNSMIRCSTVV 151
                    +   +  Q    V + EVAG  T  E       V+ D    R  +  
Sbjct: 126 FAGATTGQQLLYALDEQ----VRRYEVAGLVTKYEGWEFLGAVLDDERSCRGISAQ 177


>gi|294085403|ref|YP_003552163.1| dihydrolipoamide dehydrogenase [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292664978|gb|ADE40079.1| dihydrolipoamide dehydrogenase [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M + ++D+IVIG G  G  A+  AA+LG + A I
Sbjct: 1  MTDSNFDLIVIGAGPGGYVASIRAAQLGMNVACI 34


>gi|226360190|ref|YP_002777968.1| succinate dehydrogenase flavoprotein subunit [Rhodococcus opacus
          B4]
 gi|226238675|dbj|BAH49023.1| putative succinate dehydrogenase flavoprotein subunit
          [Rhodococcus opacus B4]
          Length = 644

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
            YDV+VIG G AG  A   A + G S A++           C    G   K H V    
Sbjct: 7  HQYDVVVIGAGGAGLRAVIEAREQGLSVAVV-----------CKSLFG---KAHTVMAEG 52

Query: 64 ALDGLMGRVADAAGIQFRVLNVKKG 88
               MG   D    Q    +  +G
Sbjct: 53 GCAAAMGNANDKDTWQTHFQDTMRG 77


>gi|241204436|ref|YP_002975532.1| soluble pyridine nucleotide transhydrogenase [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240858326|gb|ACS55993.1| pyridine nucleotide-disulphide oxidoreductase dimerisation region
          [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 469

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          M+ + YD++V+G G AG   A  A+KLG    +I  
Sbjct: 1  MMLQ-YDLVVVGSGPAGRRGAIQASKLGKKVLVIEQ 35


>gi|187926844|ref|YP_001893189.1| HI0933 family protein [Ralstonia pickettii 12J]
 gi|241665173|ref|YP_002983532.1| HI0933 family protein [Ralstonia pickettii 12D]
 gi|187728598|gb|ACD29762.1| HI0933 family protein [Ralstonia pickettii 12J]
 gi|240867200|gb|ACS64860.1| HI0933 family protein [Ralstonia pickettii 12D]
          Length = 422

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG 67
          V VIG G AG  AA V ++ G    +       + S      + G+G  ++    + +D 
Sbjct: 10 VAVIGAGPAGLMAAEVLSRNGVRVEVF----DAMPSAGRKFLLAGIGGMNITH-AEPIDA 64

Query: 68 LMGR 71
           +GR
Sbjct: 65 FLGR 68


>gi|119358041|ref|YP_912685.1| FAD dependent oxidoreductase [Chlorobium phaeobacteroides DSM 266]
 gi|119355390|gb|ABL66261.1| FAD dependent oxidoreductase [Chlorobium phaeobacteroides DSM 266]
          Length = 399

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 25/187 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+++GGG +G   A    K G  T++I     T+G   C+P+    G      E+ A  
Sbjct: 5   DVVIVGGGISGLSLAYYCVKAGMKTSIIEKN-DTVGGSFCSPSYTSGGNE-FWFEMGAHT 62

Query: 67  -----GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121
                  +  + +  GI   ++   K P            + +L +   ++S  NL  ++
Sbjct: 63  CYSSYRNLLDIVEKCGIMDTIIPRAKVPFTLLIDDNIKSIVSQLNLFELLVSAPNLFKLK 122

Query: 122 GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS 181
                  +  + I      D +               R VI      +P+    D P++ 
Sbjct: 123 KTGLSVKSYYSKIVG----DGN--------------YRDVISHFFNAVPSQPTDDFPADM 164

Query: 182 LFNSFMK 188
           +F S  K
Sbjct: 165 MFKSREK 171


>gi|111026377|ref|YP_708660.1| 2,4-dichlorophenol 6-monooxygenase [Rhodococcus jostii RHA1]
 gi|110825220|gb|ABH00502.1| probable 2,4-dichlorophenol 6-monooxygenase [Rhodococcus jostii
          RHA1]
          Length = 599

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 1  MINRSYD--VIVIGGGHAGCEAAAVAAKLGASTALIT 35
          M +  YD  V+V+G G  G   A   A LG    +IT
Sbjct: 1  MAHNDYDSDVLVVGAGPMGATTALALASLGVRVHMIT 37


>gi|92118066|ref|YP_577795.1| HI0933-like protein [Nitrobacter hamburgensis X14]
 gi|91800960|gb|ABE63335.1| HI0933-like protein [Nitrobacter hamburgensis X14]
          Length = 409

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          V V+G G AG  AA V A+ G    +       + S      + G G  +L   
Sbjct: 8  VAVLGAGPAGLMAAEVLARGGVRVTVF----DAMPSAGRKFLMAGRGGLNLTHS 57


>gi|254241176|ref|ZP_04934498.1| hypothetical protein PA2G_01865 [Pseudomonas aeruginosa 2192]
 gi|126194554|gb|EAZ58617.1| hypothetical protein PA2G_01865 [Pseudomonas aeruginosa 2192]
          Length = 445

 Score = 39.9 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DV VIG G  GCE A   A+ G    L+
Sbjct: 219 DVAVIGAGMIGCEIAEDLARAGHRVTLM 246


>gi|330886293|gb|EGH20194.1| hypothetical protein PSYMO_01310 [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRRVILIDH 34


>gi|330883415|gb|EGH17564.1| hypothetical protein Pgy4_31871 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 163

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRRVILIDH 34


>gi|325525151|gb|EGD03029.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. TJI49]
          Length = 125

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           +YD IV+GGG AGC  A    K G    L+
Sbjct: 2  ETYDHIVVGGGSAGCTIAHRLVKAGRRVLLL 32


>gi|320321940|gb|EFW78036.1| hypothetical protein PsgB076_24144 [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320330954|gb|EFW86928.1| hypothetical protein PsgRace4_06298 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 392

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 5  DVVIIGAGAAGLMCAFTAAARGRRVILIDH 34


>gi|319791301|ref|YP_004152941.1| fad dependent oxidoreductase [Variovorax paradoxus EPS]
 gi|315593764|gb|ADU34830.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS]
          Length = 430

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV ++GGG  G  AA   A+ GA  A++
Sbjct: 26 DVAIVGGGFTGLSAALAFARRGARVAVL 53


>gi|299530386|ref|ZP_07043809.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni S44]
 gi|298721611|gb|EFI62545.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni S44]
          Length = 601

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G S A ++
Sbjct: 10 KRKFDVVIVGAGGSGLRAALELSRAGLSVASLS 42


>gi|296394388|ref|YP_003659272.1| dihydrolipoamide dehydrogenase [Segniliparus rotundus DSM 44985]
 gi|296181535|gb|ADG98441.1| dihydrolipoamide dehydrogenase [Segniliparus rotundus DSM 44985]
          Length = 466

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----STIGSMSCNPAIGGLGKG 56
          +   YDV+++G G  G  AA  AA+LG S A+I  K        +G +     +      
Sbjct: 1  MADEYDVVLLGAGPGGYVAAIRAAQLGLSVAVIEEKYWGGVCLNVGCIPSKALLRNAEIA 60

Query: 57 HLVREIDALDGLMGRVADAAGIQF 80
          H+V++     G+ G V+   G  F
Sbjct: 61 HIVQKQAKEFGISGEVSADFGAAF 84


>gi|289597203|ref|YP_003483899.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Aciduliprofundum boonei T469]
 gi|289534990|gb|ADD09337.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Aciduliprofundum boonei T469]
          Length = 409

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +VIGGG AG  A+  A +LG    L+
Sbjct: 3  YDTVVIGGGPAGLAASIKAKELGLKVLLL 31


>gi|264679527|ref|YP_003279434.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni CNB-2]
 gi|262210040|gb|ACY34138.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni CNB-2]
          Length = 601

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G S A ++
Sbjct: 10 KRKFDVVIVGAGGSGLRAALELSRAGLSVASLS 42


>gi|297565572|ref|YP_003684544.1| dihydrolipoamide dehydrogenase [Meiothermus silvanus DSM 9946]
 gi|296850021|gb|ADH63036.1| dihydrolipoamide dehydrogenase [Meiothermus silvanus DSM 9946]
          Length = 464

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          ++  YDVIVIG G  G  AA  AA+LG    
Sbjct: 1  MSTVYDVIVIGTGPGGYHAAIRAAQLGKRVL 31


>gi|254491887|ref|ZP_05105066.1| alkyl hydroperoxide reductase, F subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463365|gb|EEF79635.1| alkyl hydroperoxide reductase, F subunit [Methylophaga thiooxydans
           DMS010]
          Length = 525

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
            +DV++IGGG AG  A+  A++ G  T ++ 
Sbjct: 212 DFDVLIIGGGPAGASASIYASRKGIRTGIVA 242


>gi|213961727|ref|ZP_03389993.1| All-trans-retinol 13,14-reductase [Capnocytophaga sputigena
          Capno]
 gi|213955516|gb|EEB66832.1| All-trans-retinol 13,14-reductase [Capnocytophaga sputigena
          Capno]
          Length = 499

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---CNPA--------IGG 52
          + YDV+VIG G +G  +A + AK G    ++       G++     N          IG 
Sbjct: 2  KQYDVLVIGSGLSGLFSALLLAKAGKKVCVLEKNQQYGGNLQTFVRNNTLFDTGVHYIGS 61

Query: 53 LGKGHLVRE 61
          L +G ++ E
Sbjct: 62 LAEGQVLYE 70


>gi|168184867|ref|ZP_02619531.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum Bf]
 gi|182672076|gb|EDT84037.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum Bf]
          Length = 407

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD- 66
           +IVIGGG AG  AA  AA+      L+      +G       I G G+ ++    D  + 
Sbjct: 4   IIVIGGGPAGMMAAIKAAEK-HDVILVERN-EKLG---KKLYITGKGRCNVTSSKDISEF 58

Query: 67  ------------GLMGRVADAAGIQFRVLNVKKGPAVRGPRT--QADRELYRLAMQREIL 112
                         +    +   I+F      K    RG R    +D+    +    + L
Sbjct: 59  FDYIPTNPYFLYSPLYTFTNEDAIKFFNDRNIKLKVERGDRVFPSSDKSSDIIYALEKEL 118

Query: 113 SQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            + N+ ++  + +     E + I  +  +    I+    +L TG
Sbjct: 119 IERNVKILLNKRITRIYKEDSNIKYVETEKGEKIKGDYFILCTG 162


>gi|149919410|ref|ZP_01907891.1| putative halogenase [Plesiocystis pacifica SIR-1]
 gi|149819716|gb|EDM79141.1| putative halogenase [Plesiocystis pacifica SIR-1]
          Length = 427

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 31/176 (17%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALIT---HKTSTIGSM------SCNPAIGGLGKGHLV 59
           ++IGGG AG  AA   AK G    L     H    +G             +G   K    
Sbjct: 2   VIIGGGPAGTSAATQLAKKGYDVVLFEKAKHPREHVGESLIPHFWRYTDELGVSEKILAE 61

Query: 60  REIDALDGLM---GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN 116
              +   G +   GR+   +   F         A+   R + D  L++         QEN
Sbjct: 62  GFQEKTGGTVVWNGRIQQVSFSDFAYDRR----ALHVERARFDHILFQHC-------QEN 110

Query: 117 LDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAG 172
                        E+ ++ S+   + +  + + V         G I    +   +G
Sbjct: 111 --------GAKTFERVMVKSVRFAEEAGGKQTVVWRDIDAATDGEIECEFVVDASG 158


>gi|145610919|ref|XP_368439.2| hypothetical protein MGG_00805 [Magnaporthe oryzae 70-15]
 gi|145018257|gb|EDK02536.1| hypothetical protein MGG_00805 [Magnaporthe oryzae 70-15]
          Length = 507

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM--------SCNPAIGG 52
           M  R   VI++G G  G  AA  AA+ G S  +   +               S N A+  
Sbjct: 1   MGARQMKVIIVGAGPVGSLAALYAARRGHSVEIYELRDDLRDPSTTLLNFTRSINLALSE 60

Query: 53  LGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL---AMQR 109
            G  H +R       L     D+  ++ R+++ ++G +        D +++     A+ R
Sbjct: 61  RGI-HALRHAAEPQLLDVIFRDSIPMRGRMIHGRRGRSGELFEQAQDYDIHGRSIYAIDR 119

Query: 110 EILSQENLDVIQGE 123
             L+   LDV++  
Sbjct: 120 AGLNSRLLDVLEEM 133


>gi|160897866|ref|YP_001563448.1| succinate dehydrogenase, flavoprotein subunit [Delftia
          acidovorans SPH-1]
 gi|160363450|gb|ABX35063.1| succinate dehydrogenase, flavoprotein subunit [Delftia
          acidovorans SPH-1]
          Length = 601

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G S A ++
Sbjct: 10 KRKFDVVIVGAGGSGLRAALELSRAGLSVASLS 42


>gi|221065940|ref|ZP_03542045.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni KF-1]
 gi|220710963|gb|EED66331.1| succinate dehydrogenase, flavoprotein subunit [Comamonas
          testosteroni KF-1]
          Length = 601

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  AA   ++ G S A ++
Sbjct: 10 KRKFDVVIVGAGGSGLRAALELSRAGLSVASLS 42


>gi|71734020|ref|YP_272807.1| hypothetical protein PSPPH_0505 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71554573|gb|AAZ33784.1| conserved hypothetical protein TIGR00275 [Pseudomonas syringae
          pv. phaseolicola 1448A]
          Length = 405

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          DV++IG G AG   A  AA  G    LI H
Sbjct: 18 DVVIIGAGAAGLMCAFTAAARGRRVILIDH 47


>gi|55376650|ref|YP_134501.1| thioredoxin reductase [Haloarcula marismortui ATCC 43049]
 gi|55229375|gb|AAV44795.1| thioredoxin reductase [Haloarcula marismortui ATCC 43049]
          Length = 413

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDV V+GGG AG  +A   ++LG  T +I
Sbjct: 65 DYDVAVVGGGPAGLTSALYTSRLGMDTIVI 94


>gi|78063909|ref|YP_373817.1| glucose-methanol-choline oxidoreductase [Burkholderia sp. 383]
 gi|77971794|gb|ABB13173.1| Glucose-methanol-choline oxidoreductase [Burkholderia sp. 383]
          Length = 559

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 24/157 (15%)

Query: 104 RLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162
              +  E+ ++ NL +  G  V      +     + + +   I  + VVL+ G +    I
Sbjct: 258 MAYLTNEVRARSNLTIRGGALVDRVLFAQGRAIGVRLDNGEEIHANEVVLSAGAYGSAAI 317

Query: 163 HIGK-----LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQ 217
            +         + A  + +  +  +        F         P R+             
Sbjct: 318 LLRSGIGPGADLRALSIPEVAALPVGQRLKDHPFYYNAY-AARPDRI------------- 363

Query: 218 FADERLIPFSFMTDK---ITNRQIECGITRTNLETHR 251
             D+     +F+        +  ++  IT T+L  H 
Sbjct: 364 -GDQSPSIGAFLWTNSSTAQHGDLDLHITATHLFPHD 399


>gi|146278870|ref|YP_001169029.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557111|gb|ABP71724.1| FAD dependent oxidoreductase [Rhodobacter sphaeroides ATCC 17025]
          Length = 531

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  YD I++GGGH G    A  A+ G    ++
Sbjct: 1  MSPPYDAIIVGGGHNGLTCGAYLARAGVKVLVV 33


>gi|189345580|ref|YP_001942109.1| geranylgeranyl reductase [Chlorobium limicola DSM 245]
 gi|189339727|gb|ACD89130.1| geranylgeranyl reductase [Chlorobium limicola DSM 245]
          Length = 380

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV VIGGG +G  AAA+ A  G  T L+      +        +G + + +L  E+   
Sbjct: 3   YDVAVIGGGPSGAVAAAILAHAGLETVLVERNLDNVKPCGGAIPLGLIEEFNLPAELVEK 62

Query: 66  DGLMGRVADAAG--IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENL 117
                R     G  I   + N   G      R + DR L   A +      E L
Sbjct: 63  KLSHMRARSPKGRVIGMHMPN---GYVGMVRRERFDRYLRDEAGKSGCEVMEGL 113


>gi|307946659|ref|ZP_07661994.1| glutathione-disulfide reductase [Roseibium sp. TrichSKD4]
 gi|307770323|gb|EFO29549.1| glutathione-disulfide reductase [Roseibium sp. TrichSKD4]
          Length = 458

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          M    YD+ VIGGG  G  AA +AA  GA   L
Sbjct: 1  MSQYDYDLFVIGGGSGGVRAARIAATHGAKVGL 33


>gi|302808379|ref|XP_002985884.1| hypothetical protein SELMODRAFT_424962 [Selaginella moellendorffii]
 gi|300146391|gb|EFJ13061.1| hypothetical protein SELMODRAFT_424962 [Selaginella moellendorffii]
          Length = 569

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DVIV+GGG AG   A   AK G    ++
Sbjct: 86  DVIVVGGGIAGISVAYNLAKAGKQVVVL 113


>gi|295134045|ref|YP_003584721.1| alkyl hydroperoxide reductase, F52a subunit [Zunongwangia
          profunda SM-A87]
 gi|294982060|gb|ADF52525.1| alkyl hydroperoxide reductase, F52a subunit [Zunongwangia
          profunda SM-A87]
          Length = 301

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M N+ ++VI+IGG +AG  AA    +      +I
Sbjct: 1  MENKKFEVIIIGGSYAGLSAAMALGRSLRKVLII 34


>gi|240103362|ref|YP_002959671.1| Geranylgeranyl hydrogenase [Thermococcus gammatolerans EJ3]
 gi|259647506|sp|C5A6E5|GGR_THEGJ RecName: Full=Digeranylgeranylglycerophospholipid reductase;
          Short=DGGGPL reductase; AltName:
          Full=2,3-di-O-geranylgeranylglyceryl phosphate
          reductase; AltName: Full=Geranylgeranyl reductase;
          Short=GGR
 gi|239910916|gb|ACS33807.1| Geranylgeranyl hydrogenase [Thermococcus gammatolerans EJ3]
          Length = 395

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG 51
          ++  YDV+V+G G AG   A   A+ G S  LI  K +      C   I 
Sbjct: 1  MSWKYDVVVVGAGIAGPIVARNVARAGFSVLLIDKKWAIGTPKQCAEGIS 50


>gi|291303341|ref|YP_003514619.1| monooxygenase FAD-binding protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290572561|gb|ADD45526.1| monooxygenase FAD-binding protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 408

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 24/176 (13%)

Query: 3   NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----------GSMSCNPAIGG 52
           N +  V V+GGG AG   + + A+ G    L+      +           +++    +G 
Sbjct: 4   NETATVCVVGGGPAGAMLSLLLARAGIKVTLLEKHEDFLRDFRGDTVHPSTLAVLDQLGL 63

Query: 53  LGKGHLV--REIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQRE 110
             + H +  R+I  +D L        G +  V N  +            +  +   +  E
Sbjct: 64  SERFHALPHRKISGIDLL------KDGSRSEVANFGRLKVRHPYIAMIPQWDFLDFLTGE 117

Query: 111 ILSQENLDVIQGE-VAGFNTEKNIISSIVMQDN----SMIRCSTVVLTTGTFLRGV 161
                N  +          T +  +  +           IR   VV   G      
Sbjct: 118 AARYPNFTLRMNTRFTDVLTAEGRVRGV-TYRGPDGEGSIRAGLVVAADGRHSDAR 172


>gi|227829203|ref|YP_002830982.1| geranylgeranyl reductase [Sulfolobus islandicus L.S.2.15]
 gi|229577972|ref|YP_002836370.1| geranylgeranyl reductase [Sulfolobus islandicus Y.G.57.14]
 gi|227455650|gb|ACP34337.1| geranylgeranyl reductase [Sulfolobus islandicus L.S.2.15]
 gi|228008686|gb|ACP44448.1| geranylgeranyl reductase [Sulfolobus islandicus Y.G.57.14]
          Length = 453

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 17/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLV 59
           M +  YDV++IG G AG   A   ++       I  K  +  G   C  AI    K H  
Sbjct: 1   MKSAEYDVLIIGLGIAGASLAWKLSQSNLKVLAIDSKPWNRFGDKPCGDAIS---KEHFD 57

Query: 60  REIDALDGLMGRVADA--AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ--E 115
                     G+  +    GI+    ++K    V+G   + D   Y   + +E   +  E
Sbjct: 58  NLGMPY--PQGKELEEKVEGIKLYSPDMKTVWTVKGEGFEIDSPSYVQRLTKEARDRGVE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
            LD+            N +   V       +    +    V  TG      
Sbjct: 116 ILDLTTAMKP--IIVGNKVEGAVLFNRRTNETIEAKAKITVDATGYSTSFR 164


>gi|222111508|ref|YP_002553772.1| hypothetical protein Dtpsy_2335 [Acidovorax ebreus TPSY]
 gi|221730952|gb|ACM33772.1| HI0933 family protein [Acidovorax ebreus TPSY]
          Length = 413

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    +D ++IG G AG   AA A + G    L+ H    +        I G G+ +
Sbjct: 1  MSTPFFDAVIIGAGAAGLFCAAQAGQRGLKVLLVDH-ADKVAEKVR---ISGGGRCN 53


>gi|209963469|ref|YP_002296384.1| dihydrolipoamide dehydrogenase [Rhodospirillum centenum SW]
 gi|209956935|gb|ACI97571.1| dihydrolipoamide dehydrogenase [Rhodospirillum centenum SW]
          Length = 468

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M +  +D+IV+G G  G  AA  AA+LG  TA++
Sbjct: 1  MADTQFDLIVLGAGPGGYVAAIRAAQLGMKTAVV 34


>gi|229583181|ref|YP_002841580.1| geranylgeranyl reductase [Sulfolobus islandicus Y.N.15.51]
 gi|228013897|gb|ACP49658.1| geranylgeranyl reductase [Sulfolobus islandicus Y.N.15.51]
          Length = 453

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 17/171 (9%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAIGGLGKGHLV 59
           M +  YDV++IG G AG   A   ++       I  K  +  G   C  AI    K H  
Sbjct: 1   MKSAEYDVLIIGLGIAGASLAWKLSQSNLKVLAIDSKPWNRFGDKPCGDAIS---KEHFD 57

Query: 60  REIDALDGLMGRVADA--AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ--E 115
                     G+  +    GI+    ++K    V+G   + D   Y   + +E   +  E
Sbjct: 58  NLGMPY--PQGKELEEKVEGIKLYSPDMKTVWTVKGEGFEIDSPSYVQRLTKEARDRGVE 115

Query: 116 NLDVIQGEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGV 161
            LD+            N +   V       +    +    V  TG      
Sbjct: 116 ILDLTTAMKP--IIVGNKVEGAVLFNRRTNETIEAKAKITVDATGYSTSFR 164


>gi|126740005|ref|ZP_01755695.1| glutathione-disulfide reductase [Roseobacter sp. SK209-2-6]
 gi|126718824|gb|EBA15536.1| glutathione-disulfide reductase [Roseobacter sp. SK209-2-6]
          Length = 451

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          ++  YD+ VIGGG  G  AA VAA+ G   AL
Sbjct: 1  MSFDYDLFVIGGGSGGVRAARVAAQEGVKVAL 32


>gi|124027150|ref|YP_001012470.1| ribulose-1,5-biphosphate synthetase [Hyperthermus butylicus DSM
          5456]
 gi|123977844|gb|ABM80125.1| Thi4 family, includes putative thiamine biosynthetic enzyme
          [Hyperthermus butylicus DSM 5456]
          Length = 278

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV + G G AG  AA + A+ G    ++ H  
Sbjct: 44 DVAIAGAGPAGLTAAWLLAEKGLRVVVVEHSL 75


>gi|119473420|ref|XP_001258605.1| Cytoplasmic thioredoxin reductase, putative [Neosartorya fischeri
          NRRL 181]
 gi|119406757|gb|EAW16708.1| Cytoplasmic thioredoxin reductase, putative [Neosartorya fischeri
          NRRL 181]
          Length = 387

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YDVIVIGGG +G  AA+  +++     L 
Sbjct: 27 QYDVIVIGGGPSGLSAASGLSRVLRKVILF 56


>gi|115373078|ref|ZP_01460381.1| glucose inhibited division protein A [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821894|ref|YP_003954252.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
           protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369990|gb|EAU68922.1| glucose inhibited division protein A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394966|gb|ADO72425.1| Pyridine nucleotide-disulfide oxidoreductase domain protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 316

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 43/150 (28%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+++GGG AG  AA    +   +  L                                
Sbjct: 3   YDVVIVGGGPAGLNAALYLGRARRAVLL-------------------------------C 31

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           D    R A AA +              G R       +R   + ++L   N+++    V 
Sbjct: 32  DAGTPRNAAAAHMH-----------GFGSRDGIPPPEFRRISREQLLHYPNVEMRDTRVG 80

Query: 126 GFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
                +     + + D + +    ++L  G
Sbjct: 81  SVEAHEGGFR-VSLGDGTTVAARRILLAVG 109


>gi|121595167|ref|YP_987063.1| hypothetical protein Ajs_2846 [Acidovorax sp. JS42]
 gi|120607247|gb|ABM42987.1| HI0933 family protein [Acidovorax sp. JS42]
          Length = 413

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH 57
          M    +D ++IG G AG   AA A + G    L+ H    +        I G G+ +
Sbjct: 1  MSTPFFDAVIIGAGAAGLFCAAQAGQRGLKVLLVDH-ADKVAEKVR---ISGGGRCN 53


>gi|83590360|ref|YP_430369.1| putative oxidoreductase [Moorella thermoacetica ATCC 39073]
 gi|83573274|gb|ABC19826.1| sulfide dehydrogenase (flavoprotein) subunit SudA [Moorella
           thermoacetica ATCC 39073]
          Length = 463

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           Y V VIG G AG  AAA  A++G    + 
Sbjct: 141 YKVAVIGSGPAGLTAAADLARMGHQVTVF 169


>gi|73668623|ref|YP_304638.1| bacteriochlorophyll synthase 43 kDa subunit [Methanosarcina barkeri
           str. Fusaro]
 gi|72395785|gb|AAZ70058.1| bacteriochlorophyll synthase 43 kDa subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 385

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-GKGHLVREIDAL 65
           D+IVIG   AG  AA  A + GA+  L          +   P       KG L +     
Sbjct: 4   DIIVIGASPAGLMAARNACEKGAAVLL----LEKKEEIGHPPHPANSFFKGMLDK----- 54

Query: 66  DGLMGRVADAAGI-----QFRVLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDV 119
               G   D + +       ++++       V       D+  +     ++I+    +D+
Sbjct: 55  ---CGEKVDPSYVLHYLKGMKIISPSGRTVEVEATGYAIDKTAFDRFYAKKIMKT-GVDL 110

Query: 120 IQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
             G +V     E +  + +      +     V+++ G
Sbjct: 111 RTGVKVQDIQKEGDKFT-VNTSAG-VFTSKLVIISDG 145


>gi|55981926|ref|YP_145223.1| hypothetical protein TTHA1957 [Thermus thermophilus HB8]
 gi|2624412|emb|CAA75643.1| protein of unknown function with putative ADP binding fold
          [Thermus thermophilus]
 gi|55773339|dbj|BAD71780.1| hypothetical protein [Thermus thermophilus HB8]
          Length = 155

 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          + R  + +V+GGG AG  AA   A+ G    +          +SC 
Sbjct: 25 MERRVEALVVGGGLAGLSAAYFLARRGLRPWV----LEREAPLSCT 66


>gi|317031837|ref|XP_001393521.2| hypothetical protein ANI_1_1162084 [Aspergillus niger CBS 513.88]
          Length = 1197

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 2  INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
          +   YDV+V+G G+ AG  AA+  A+ G S A++             P          +R
Sbjct: 22 MKTEYDVVVVGSGYGAGV-AASRMARAGKSVAVLELGWE------RRPGSFPRSLFQCLR 74

Query: 61 EIDALDGLMGRVADAAGIQFRVL 83
          EI+       R+ D     F+++
Sbjct: 75 EINISGISRWRLPDKPTRLFQLI 97


>gi|317483828|ref|ZP_07942768.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila
          wadsworthia 3_1_6]
 gi|316924931|gb|EFV46077.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila
          wadsworthia 3_1_6]
          Length = 307

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          M  R+ D+IV+GGG AG  AA  A +      L+    
Sbjct: 1  MEERTCDIIVLGGGPAGMTAAIYAKRANLDVVLLETNV 38


>gi|312143639|ref|YP_003995085.1| glutaredoxin 3 [Halanaerobium sp. 'sapolanicus']
 gi|311904290|gb|ADQ14731.1| glutaredoxin 3 [Halanaerobium sp. 'sapolanicus']
          Length = 395

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           V V+GGG++G E A   AK+G    LI  + S +G
Sbjct: 238 VAVVGGGNSGLEGALDLAKIGCEVDLIEIEPSLMG 272


>gi|302871317|ref|YP_003839953.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302574176|gb|ADL41967.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 454

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+I+IGGG AG  AA  A+K G  T LI
Sbjct: 2  KYDLIIIGGGPAGYLAAERASKGGLKTLLI 31


>gi|294340840|emb|CAZ89235.1| putative oxidoreductase, FAD-binding [Thiomonas sp. 3As]
          Length = 451

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 58/210 (27%), Gaps = 24/210 (11%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DV+VIGGG AG  AA +  + G    L+         +  +     L    L+ ++   +
Sbjct: 18  DVLVIGGGPAGTTAATLLQERGFRVTLLEKDHHPRFHIGESLLPANL---PLLEKLGVAE 74

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            +     +  G +F     ++   +       D+ +                V + E   
Sbjct: 75  AVKAMAMEKWGAEFVSPWHEQKTQMFAFADAWDKSMPMAY-----------QVRRSEFDA 123

Query: 127 FNTEKNIISSIVMQDNSMI------RCSTVVLTTGTFLRGVIHIGKLKI---PAGRMGDS 177
                     + +Q+   +            + +     G       +     +GR    
Sbjct: 124 LLMRNAASKGVEVQEGCKVDDVQFLPDGQGAIISAQHEDGRRASWAARYVVDASGRDTFF 183

Query: 178 PSNSLFNSFMKFDFDTGRLKTGTPA-RLDG 206
            S                    T A RL+G
Sbjct: 184 GSRFKTKKRNPKHNSAAIYAHFTGAKRLEG 213


>gi|227827937|ref|YP_002829717.1| ribulose-1,5-biphosphate synthetase [Sulfolobus islandicus
          M.14.25]
 gi|259517455|sp|C3MWW9|RUBPS_SULIM RecName: Full=Putative ribose 1,5-bisphosphate isomerase;
          AltName: Full=Ribulose 1,5-bisphosphate synthase;
          Short=RuBP synthase
 gi|227459733|gb|ACP38419.1| thiazole biosynthesis enzyme [Sulfolobus islandicus M.14.25]
          Length = 267

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          DV+++G G +G  AA   AK G  T +   + S
Sbjct: 32 DVVIVGAGPSGLSAAYYLAKAGLKTLVFERRLS 64


>gi|254524717|ref|ZP_05136772.1| succinate dehydrogenase, flavoprotein subunit [Stenotrophomonas
          sp. SKA14]
 gi|219722308|gb|EED40833.1| succinate dehydrogenase, flavoprotein subunit [Stenotrophomonas
          sp. SKA14]
          Length = 596

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A  G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAAKGLQTVCLT 40


>gi|190573778|ref|YP_001971623.1| succinate dehydrogenase flavoprotein subunit [Stenotrophomonas
          maltophilia K279a]
 gi|190011700|emb|CAQ45319.1| putative succinate dehydrogenase flavoprotein subunit
          [Stenotrophomonas maltophilia K279a]
          Length = 596

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A  G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAAKGLQTVCLT 40


>gi|172040741|ref|YP_001800455.1| putative FAD-binding dehydrogenase [Corynebacterium urealyticum
          DSM 7109]
 gi|171852045|emb|CAQ05021.1| hypothetical protein cu1061 [Corynebacterium urealyticum DSM
          7109]
          Length = 568

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGGL--GKGHLVREID 63
          DVIV+G G AG   A  AA  G +  ++     + +G  +   ++GGL        R + 
Sbjct: 8  DVIVVGAGLAGLVTAYEAATSGLNVLILDQENRNNLGGQAFW-SLGGLFYVDSPEQRLMG 66

Query: 64 ALDGLMGRVAD-AAGIQFRVLNVKKGPAVRG 93
            D       D     QF      + P   G
Sbjct: 67 VKDSEDLAWRDWENSAQFEDTPNDRWPKAWG 97


>gi|157373485|ref|YP_001472085.1| flavocytochrome c flavin subunit, putative [Shewanella sediminis
          HAW-EB3]
 gi|157315859|gb|ABV34957.1| flavocytochrome c flavin subunit, putative [Shewanella sediminis
          HAW-EB3]
          Length = 519

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
           +   D+IV+G G AG  AA  A + GAS  ++      +     N  I G  
Sbjct: 46 FDEVVDIIVVGSGFAGMSAALQAREAGASVMVV----DKMPVFGGNSTINGGA 94


>gi|194365315|ref|YP_002027925.1| succinate dehydrogenase flavoprotein subunit [Stenotrophomonas
          maltophilia R551-3]
 gi|194348119|gb|ACF51242.1| succinate dehydrogenase, flavoprotein subunit [Stenotrophomonas
          maltophilia R551-3]
          Length = 596

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
             YD++V+G G AG  A    A  G  T  +T
Sbjct: 8  EHKYDMVVVGAGGAGLRATFGLAAKGLQTVCLT 40


>gi|37222126|gb|AAP49320.1| Uvs077 [uncultured bacterium]
          Length = 760

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          D+++ GGG AG  AA  AA+ G+   L          +   P +GG    
Sbjct: 21 DLVIAGGGLAGVCAAITAARAGSRVVL----------IQDRPVLGGNASS 60


>gi|89899692|ref|YP_522163.1| FAD dependent oxidoreductase [Rhodoferax ferrireducens T118]
 gi|89344429|gb|ABD68632.1| FAD dependent oxidoreductase [Rhodoferax ferrireducens T118]
          Length = 377

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV ++GGG  G  AA    ++G    L+    
Sbjct: 9  DVAIMGGGIVGSSAALALRRMGMQVVLLERDL 40


>gi|15828281|ref|NP_302544.1| dihydrolipoamide dehydrogenase [Mycobacterium leprae TN]
 gi|221230758|ref|YP_002504174.1| dihydrolipoamide dehydrogenase [Mycobacterium leprae Br4923]
 gi|15213976|sp|Q50068|DLDH_MYCLE RecName: Full=Dihydrolipoyl dehydrogenase; AltName:
          Full=Dihydrolipoamide dehydrogenase; AltName: Full=E3
          component of alpha keto acid dehydrogenase complexes
 gi|699253|gb|AAA63016.1| u1740l [Mycobacterium leprae]
 gi|13093974|emb|CAC31903.1| dihydrolipoamide dehydrogenase [Mycobacterium leprae]
 gi|219933865|emb|CAR72485.1| dihydrolipoamide dehydrogenase [Mycobacterium leprae Br4923]
          Length = 467

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37
           YDV+V+G G  G  AA  AA+LG STA++  K
Sbjct: 3  HYDVVVLGAGPGGYVAAIRAAQLGLSTAVVEPK 35


>gi|326387577|ref|ZP_08209183.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
          19370]
 gi|326207623|gb|EGD58434.1| FAD dependent oxidoreductase [Novosphingobium nitrogenifigens DSM
          19370]
          Length = 379

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +   YDVIVIG G  G   A   A+ G S  ++
Sbjct: 1  MRTGYDVIVIGAGVTGLSTAWWLAREGISVLVL 33


>gi|312622977|ref|YP_004024590.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312203444|gb|ADQ46771.1| dihydrolipoamide dehydrogenase [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 454

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           YD+I+IGGG AG  AA  A+K G  T LI
Sbjct: 2  KYDLIIIGGGPAGYLAAERASKGGLKTLLI 31


>gi|298248283|ref|ZP_06972088.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
 gi|297550942|gb|EFH84808.1| FAD dependent oxidoreductase [Ktedonobacter racemifer DSM 44963]
          Length = 754

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          D+++IGGG +G  AA  AA+ G    L          +   P +GG    
Sbjct: 22 DLVIIGGGMSGVCAAITAARAGVKVTL----------VQDRPVLGGNASS 61


>gi|255693328|ref|ZP_05417003.1| dihydrolipoyl dehydrogenase [Bacteroides finegoldii DSM 17565]
 gi|260620904|gb|EEX43775.1| dihydrolipoyl dehydrogenase [Bacteroides finegoldii DSM 17565]
          Length = 447

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            Y +I+IGGG AG  AA  A K G S  LI      +G +  N   G +    L+     
Sbjct: 2   KYQLIIIGGGPAGYTAAEAAGKAGLSVLLIEKN--NLGGVCLNE--GCIPTKTLLYSAKT 57

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPR-TQADRELYRLAMQREILSQENLDVIQGE 123
            DG       A+     V  V    A    R ++  R+L  L ++ ++ S  N+ ++ GE
Sbjct: 58  YDG----ARHASKYAVNVSEVSFDLAKIIARKSKVVRKL-VLGVKSKLTSN-NVTIVAGE 111

Query: 124 VAGFNTEKNIISSIVMQDN 142
                 +  +       + 
Sbjct: 112 AQ-IIDKNTVRCGEETYEG 129


>gi|254681606|gb|ACT78995.1| lycopene beta cyclase [Narcissus pseudonarcissus]
          Length = 504

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 74/223 (33%), Gaps = 19/223 (8%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           D+ V+GGG AG   A   ++ G S   I      I              G  V E + +D
Sbjct: 89  DLAVVGGGPAGLAVAQQVSEAGLSVVSIDPNPKLIWP---------NNYGVWVDEFEDMD 139

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
            L    A  +G    V +       R       + L    M++ + +   +   Q  V  
Sbjct: 140 LLDCLDATWSGAIVYVDDRSTKNLSRPYARVNRKNLKSKMMKKCVSN--GVRFHQATVVK 197

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E+   S ++  D   I    V+  TG F R ++   K   P           L    
Sbjct: 198 AMHEEEK-SYLICSDGVTIDARVVLDATG-FSRCLVQYDK---PYNPGYQVAYGILAEV- 251

Query: 187 MKFDFDTGR--LKTGTPARLDGKTIIWDKTEKQFADERLIPFS 227
            +  FD  +        + L+GK  + ++  K       +PFS
Sbjct: 252 EEHPFDVDKMVFMDWRDSHLNGKAELNERNAKIPTFLYAMPFS 294


>gi|238809979|dbj|BAH69769.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 311

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 1  MINRS----YDVIVIGGGHAGCEAAAVAAKLGASTA 32
          M+++     +DV+++G G AG  AA   ++ G +TA
Sbjct: 1  MMDKKDIKKFDVLIVGSGPAGLNAALYTSRAGLNTA 36


>gi|225156495|ref|ZP_03724830.1| hypothetical protein ObacDRAFT_8318 [Opitutaceae bacterium TAV2]
 gi|224802924|gb|EEG21171.1| hypothetical protein ObacDRAFT_8318 [Opitutaceae bacterium TAV2]
          Length = 705

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
          N  YD++VIGG   G   A  AA+ G    L+ H
Sbjct: 5  NSHYDLVVIGGTPGGIACAVRAAREGLRVLLVNH 38


>gi|298490605|ref|YP_003720782.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
           azollae' 0708]
 gi|298232523|gb|ADI63659.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase ['Nostoc
           azollae' 0708]
          Length = 515

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           +I +   + VIGGG  GCE A    +LG    L  H +S I
Sbjct: 202 LIQKPDKLAVIGGGPIGCELAQAFRRLGCKVTLF-HNSSHI 241


>gi|170697173|ref|ZP_02888268.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia ambifaria
           IOP40-10]
 gi|170138009|gb|EDT06242.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia ambifaria
           IOP40-10]
          Length = 687

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L    T 
Sbjct: 392 VVVVGAGPAGLEAARVAKLRGHDVVLFEKNTE 423


>gi|167584673|ref|ZP_02377061.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia ubonensis Bu]
          Length = 687

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L    T 
Sbjct: 392 VVVVGAGPAGLEAARVAKLRGHDVVLFEKNTE 423


>gi|159480468|ref|XP_001698304.1| amine oxidoreductase [Chlamydomonas reinhardtii]
 gi|158282044|gb|EDP07797.1| amine oxidoreductase [Chlamydomonas reinhardtii]
          Length = 527

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
          M +   DV+VIG G +G  AA+   + G   A++    + +G       IG  G  
Sbjct: 38 MRDEPLDVLVIGAGISGLAAASALQRHGLRVAVLE-SRARVGGRIHTVQIGPHGPS 92


>gi|160900336|ref|YP_001565918.1| hypothetical protein Daci_4904 [Delftia acidovorans SPH-1]
 gi|160365920|gb|ABX37533.1| HI0933 family protein [Delftia acidovorans SPH-1]
          Length = 458

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          DV VIG G AG  AA   A  G    +         S      + G G  +L   
Sbjct: 21 DVAVIGAGPAGLMAAEGLAGKGLDVHVF----EAKSSAGRKFLMAGKGGLNLTHS 71


>gi|111018062|ref|YP_701034.1| succinate dehydrogenase flavoprotein subunit [Rhodococcus jostii
          RHA1]
 gi|110817592|gb|ABG92876.1| succinate dehydrogenase flavoprotein subunit [Rhodococcus jostii
          RHA1]
          Length = 644

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG 54
            YDV+VIG G AG  A   A + G S A++       G      A GG  
Sbjct: 7  HQYDVVVIGAGGAGLRAVIEAREQGLSVAVVCKSL--FGKAHTVMAEGGCA 55


>gi|50427745|ref|XP_462485.1| DEHA2G21670p [Debaryomyces hansenii CBS767]
 gi|49658155|emb|CAG90995.1| DEHA2G21670p [Debaryomyces hansenii]
          Length = 311

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          ++ SYDVI+IGG  AG  A    A+    T L      +     CN
Sbjct: 1  MDNSYDVIIIGGSAAGLAATLAIART-MKTVLC---IDSKA--PCN 40


>gi|83630797|gb|ABC26892.1| electron-transferring-flavoprotein dehydrogenase [Herbaspirillum
          seropedicae]
          Length = 67

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTA 32
          +   +D IV+G G +G   A   AK G    
Sbjct: 1  MTEKFDAIVVGAGPSGNACAYTMAKAGLKVL 31


>gi|115359240|ref|YP_776378.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia ambifaria
           AMMD]
 gi|115284528|gb|ABI90044.1| NADH:flavin oxidoreductase/NADH oxidase [Burkholderia ambifaria
           AMMD]
          Length = 687

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V+V+G G AG EAA VA   G    L    T 
Sbjct: 392 VVVVGAGPAGLEAARVAKLRGHDVVLFEKNTE 423


>gi|114563679|ref|YP_751192.1| flavocytochrome c [Shewanella frigidimarina NCIMB 400]
 gi|114334972|gb|ABI72354.1| flavocytochrome c [Shewanella frigidimarina NCIMB 400]
          Length = 507

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG 56
           + +YDV+++G G  G   A  + +LG S  ++  K    G  SC    G    G
Sbjct: 40 FDETYDVVIVGSGFGGLATALQSRELGMSVLVVE-KMPAFGGNSCLNGSGFAVAG 93


>gi|332830545|gb|EGK03166.1| hypothetical protein HMPREF9455_00736 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 459

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          ++  +DVIV+GGG +GC AA  AA+ GA T LI
Sbjct: 42 VDDQWDVIVVGGGPSGCAAATAAAREGAKTLLI 74


>gi|312963839|ref|ZP_07778310.1| FAD dependent oxidoreductase [Pseudomonas fluorescens WH6]
 gi|311281874|gb|EFQ60484.1| FAD dependent oxidoreductase [Pseudomonas fluorescens WH6]
          Length = 430

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKGH------- 57
           DV V+GGG +G   A   A+ G S  L+  +    G+   N    I G+G G        
Sbjct: 32  DVCVVGGGFSGLNTALELAERGFSVVLLEARKIAWGASGRNGGQLIRGVGHGLDQFANII 91

Query: 58  ---LVREIDALDGLMGRVADAAGIQFRVLN 84
               VRE+  +      +      +F++  
Sbjct: 92  GTDGVREMKLMGLEAVEIVRQRVERFQIPC 121


>gi|301631978|ref|XP_002945068.1| PREDICTED: succinate dehydrogenase flavoprotein subunit-like
          [Xenopus (Silurana) tropicalis]
          Length = 518

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   ++ G + A ++
Sbjct: 10 KRKFDVVIVGAGGSGMRASLELSRAGLNVACLS 42


>gi|296198509|ref|XP_002746743.1| PREDICTED: PHD finger protein 3 isoform 2 [Callithrix jacchus]
          Length = 1951

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 428 TSRAEYRISLRPDNAD---NRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLT 484
            S  + R S+R    D    RLT   +K   + E +  + A  I++   L S  +     
Sbjct: 833 PSADQIRQSVRHSLKDILMKRLTDSNLK---VPEEKAAKVATKIEK--ELYSFFRDTDAK 887

Query: 485 SKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAA 544
            KN   + +   +D K    ++ +   + +  +L  + P+      L   R +       
Sbjct: 888 YKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 947

Query: 545 YTGRQMIEAKE 555
              ++  E + 
Sbjct: 948 MIEKEQREVER 958


>gi|282860113|ref|ZP_06269189.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Prevotella bivia JCVIHMP010]
 gi|282587100|gb|EFB92329.1| glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
          [Prevotella bivia JCVIHMP010]
          Length = 413

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           +D IVIGGG +G  AA V A  G   A++T
Sbjct: 2  KFDTIVIGGGLSGLTAANVLAAKGQRVAIVT 32


>gi|256004241|ref|ZP_05429224.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium thermocellum
           DSM 2360]
 gi|255991831|gb|EEU01930.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium thermocellum
           DSM 2360]
 gi|316939592|gb|ADU73626.1| NADH:flavin oxidoreductase/NADH oxidase [Clostridium thermocellum
           DSM 1313]
          Length = 645

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKT----STIGSMSCNPAIGGLGKGHLVREI 62
           +VI++GGG  GCE     A+ G    +I          I     +       KG     I
Sbjct: 509 NVIIVGGGLVGCETGLHLAEKGKKVTIIDMLPEVAQDVIFMARFSLLEALKNKG-----I 563

Query: 63  DALDGLMGRVADAAGIQFRVLNVKK 87
           +   GL       +GI     N  K
Sbjct: 564 ETYGGLKLTEITESGIVVEDSNGDK 588


>gi|255532889|ref|YP_003093261.1| dihydrolipoamide dehydrogenase [Pedobacter heparinus DSM 2366]
 gi|255345873|gb|ACU05199.1| dihydrolipoamide dehydrogenase [Pedobacter heparinus DSM 2366]
          Length = 462

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVR 60
          +YD+IVIG G  G  AA  A++LG  TA++     ++G +     C P    L    +  
Sbjct: 2  NYDLIVIGSGPGGYVAAIRASQLGLKTAVVE--RESLGGICLNWGCIPTKALLKSAQVFE 59

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPA 90
           I+       + A+A      V+   +G A
Sbjct: 60 YINHAAEYGIKTAEAEADFAAVIKRSRGVA 89


>gi|218675656|gb|AAI69257.2| eukaryotic translation initiation factor 3, subunit 10 (theta)
           [synthetic construct]
          Length = 483

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 429 SRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNL 488
            R E   SL        L     +L  + +  ++R  +  +E    R L +   +  K +
Sbjct: 88  ERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTV 147

Query: 489 SSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSY-AAYTG 547
                  K+      A++     D  I++L  + PD     +  +E+L+ E         
Sbjct: 148 RERLEQIKKTELGAKAFK-----DIDIEDLEELDPDF--IMAKQVEQLEKEKKELQERLK 200

Query: 548 RQMIEA---KEIKFEEKRLI 564
            Q  +    +  K  E+  +
Sbjct: 201 NQEKKIDYFERAKRLEEIPL 220


>gi|254486772|ref|ZP_05099977.1| dihydrolipoyl dehydrogenase [Roseobacter sp. GAI101]
 gi|214043641|gb|EEB84279.1| dihydrolipoyl dehydrogenase [Roseobacter sp. GAI101]
          Length = 464

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          M  +S+D+IVIG G  G  AA   A+LG S A++
Sbjct: 1  MAAKSFDLIVIGAGPGGYVAAIRGAQLGLSVAIV 34


>gi|254442225|ref|ZP_05055701.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
          [Verrucomicrobiae bacterium DG1235]
 gi|198256533|gb|EDY80841.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
          [Verrucomicrobiae bacterium DG1235]
          Length = 484

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + +YD+IVIG G  G +AA  A+K G   A++
Sbjct: 4  DETYDLIVIGSGPGGQKAADQASKAGLKVAIV 35


>gi|192360103|ref|YP_001984188.1| putative pyridine nucleotide-disulfide oxidoreductase [Cellvibrio
          japonicus Ueda107]
 gi|190686268|gb|ACE83946.1| putative pyridine nucleotide-disulphide oxidoreductase
          [Cellvibrio japonicus Ueda107]
          Length = 305

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALI----------THKTSTIGSMSCNP-AIGGL 53
          +YDVI+IGG +AG   A   A+      ++          TH    +G    +P AI   
Sbjct: 3  TYDVIIIGGSYAGMATALQLARGRRQVLVLDTGIRRNRFATHSHGLLGQDGKSPEAIASD 62

Query: 54 GKGHLVR 60
           K  L+ 
Sbjct: 63 AKAQLLN 69


>gi|190347940|gb|EDK40304.2| hypothetical protein PGUG_04402 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 485

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 103 YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN---SMIRCSTVVLTTGTFLR 159
           +   ++    ++ N+  ++G V     E   ++ +V++        R    +   G + R
Sbjct: 139 FIQNLRSITKAETNVTAVEGTVVDLIDEDGAVTGVVVKSGKKNRTYRAKLTICCDGIYSR 198

Query: 160 GVIHIGKLKIPAG 172
               +       G
Sbjct: 199 FRKRLYDTAPSVG 211


>gi|167755287|ref|ZP_02427414.1| hypothetical protein CLORAM_00792 [Clostridium ramosum DSM 1402]
 gi|167705337|gb|EDS19916.1| hypothetical protein CLORAM_00792 [Clostridium ramosum DSM 1402]
          Length = 163

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 2  INRSYDVIVIGGGHAGCEAAA 22
          +  +YDV+V+G G AG  A  
Sbjct: 1  MKNNYDVVVVGAGPAGIMACY 21


>gi|126438143|ref|YP_001073834.1| putative FAD-binding dehydrogenase [Mycobacterium sp. JLS]
 gi|126237943|gb|ABO01344.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Mycobacterium sp. JLS]
          Length = 556

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGG--LGKGHLVREID 63
           DVIV+G G AG  A     + G   AL+     + +G  +   + GG  L      R + 
Sbjct: 4   DVIVVGAGLAGLVATHELTRRGKRVALVDQENAANLGGQAYW-SFGGLFLVDSPEQRRMR 62

Query: 64  ALDGLMGRVADAAGI-QFRVLNVKKGPAVRGPRTQADR 100
             D      +D  G   F  L+ +   A +  R   + 
Sbjct: 63  IKDSFELAWSDWQGSAAFDRLDDEDVWAAKWARAYVEW 100


>gi|115401768|ref|XP_001216472.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190413|gb|EAU32113.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 487

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          I   YDVIVIG G AG  AA   +++     L+      IG
Sbjct: 31 IQSGYDVIVIGAGFAGLIAARDLSRMHQLKVLLLEARDRIG 71


>gi|121595116|ref|YP_987012.1| succinate dehydrogenase subunit A [Acidovorax sp. JS42]
 gi|222111459|ref|YP_002553723.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax ebreus
          TPSY]
 gi|120607196|gb|ABM42936.1| succinate dehydrogenase subunit A [Acidovorax sp. JS42]
 gi|221730903|gb|ACM33723.1| succinate dehydrogenase, flavoprotein subunit [Acidovorax ebreus
          TPSY]
          Length = 601

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           R +DV+++G G +G  A+   ++ G + A ++
Sbjct: 10 KRKFDVVIVGAGGSGMRASLELSRAGLNVACLS 42


>gi|108802161|ref|YP_642358.1| putative FAD-binding dehydrogenase [Mycobacterium sp. MCS]
 gi|119871314|ref|YP_941266.1| putative FAD-binding dehydrogenase [Mycobacterium sp. KMS]
 gi|108772580|gb|ABG11302.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Mycobacterium sp. MCS]
 gi|119697403|gb|ABL94476.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Mycobacterium sp. KMS]
          Length = 556

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIGSMSCNPAIGG--LGKGHLVREID 63
           DVIV+G G AG  A     + G   AL+     + +G  +   + GG  L      R + 
Sbjct: 4   DVIVVGAGLAGLVATHELTRRGKRVALVDQENAANLGGQAYW-SFGGLFLVDSPEQRRMR 62

Query: 64  ALDGLMGRVADAAGI-QFRVLNVKKGPAVRGPRTQADR 100
             D      +D  G   F  L+ +   A +  R   + 
Sbjct: 63  IKDSFELAWSDWQGSAAFDRLDDEDVWAAKWARAYVEW 100


>gi|89900968|ref|YP_523439.1| putative glutamate synthase (NADPH) small subunit [Rhodoferax
           ferrireducens T118]
 gi|89345705|gb|ABD69908.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rhodoferax ferrireducens
           T118]
          Length = 541

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V+V+G G +G  AA   A+LG    + 
Sbjct: 127 VLVVGAGPSGLSAAYQLARLGHQVTVF 153


>gi|17979255|gb|AAL49944.1| AT5g49550/K6M13_10 [Arabidopsis thaliana]
 gi|29028742|gb|AAO64750.1| At5g49550/K6M13_10 [Arabidopsis thaliana]
          Length = 556

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + ++ +VIGGGH G  AAA  A+ G S A++
Sbjct: 11 KKKWEAVVIGGGHNGLTAAAYLARGGLSVAVL 42


>gi|81299242|ref|YP_399450.1| hypothetical protein Synpcc7942_0431 [Synechococcus elongatus PCC
          7942]
 gi|81168123|gb|ABB56463.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 422

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++DV+V+G G AG + A   A+ G +  L+
Sbjct: 10 SETFDVVVVGAGPAGGQCARRLAQAGRTVLLV 41


>gi|6249536|emb|CAB60079.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 417

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++DV+V+G G AG + A   A+ G +  L+
Sbjct: 5  SETFDVVVVGAGPAGGQCARRLAQAGRTVLLV 36


>gi|56751095|ref|YP_171796.1| hypothetical protein syc1086_c [Synechococcus elongatus PCC 6301]
 gi|24414832|emb|CAD55645.1| hypothetical protein [Synechococcus elongatus PCC 7942]
 gi|56686054|dbj|BAD79276.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 417

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          + ++DV+V+G G AG + A   A+ G +  L+
Sbjct: 5  SETFDVVVVGAGPAGGQCARRLAQAGRTVLLV 36


>gi|85704115|ref|ZP_01035218.1| glutathione-disulfide reductase [Roseovarius sp. 217]
 gi|85671435|gb|EAQ26293.1| glutathione-disulfide reductase [Roseovarius sp. 217]
          Length = 427

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          +   YD+ VIGGG  G  AA VAA+ GA  AL
Sbjct: 1  MAFDYDLFVIGGGSGGVRAARVAAQSGARVAL 32


>gi|119775212|ref|YP_927952.1| oxidoreductase [Shewanella amazonensis SB2B]
 gi|119767712|gb|ABM00283.1| conserved hypothetical oxidoreductase [Shewanella amazonensis
          SB2B]
          Length = 429

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHL 58
          DV VIGGG  G   A   A+ G    L+       G+   N   GG   G L
Sbjct: 29 DVAVIGGGFTGVNTALELAEQGYKVVLLEANKIAWGATGRN---GGQVTGSL 77


>gi|110635957|ref|YP_676165.1| NADH:flavin oxidoreductase/NADH oxidase [Mesorhizobium sp. BNC1]
 gi|110286941|gb|ABG65000.1| NADH:flavin oxidoreductase/NADH oxidase [Chelativorans sp. BNC1]
          Length = 650

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           V++IGGG AG EA  VAAK G    L   K   +G      A+
Sbjct: 391 VMIIGGGPAGLEAGRVAAKRGHDVVLHE-KLDVLGGQVRQLAL 432


>gi|23014811|ref|ZP_00054610.1| COG0493: NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Magnetospirillum magnetotacticum MS-1]
          Length = 651

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
           V V+GGG AG  AA    + G +  L   K  
Sbjct: 151 VAVVGGGPAGLSAAYQLRRQGHAVTLFEEKAE 182


>gi|332703001|ref|ZP_08423089.1| response regulator receiver protein [Desulfovibrio africanus str.
          Walvis Bay]
 gi|332553150|gb|EGJ50194.1| response regulator receiver protein [Desulfovibrio africanus str.
          Walvis Bay]
          Length = 1143

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YD +V+G G  G  +A   A+ G   AL+
Sbjct: 1  MKMTYDALVVGAGIGGIRSALDLAETGHKVALM 33


>gi|328853707|gb|EGG02844.1| hypothetical protein MELLADRAFT_38407 [Melampsora larici-populina
           98AG31]
          Length = 683

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGA---------STALITHKTSTIGSMSCNPAIGGLGKGH 57
           DV++IG G AG  AAA   K G          ST + T +   + + S            
Sbjct: 11  DVLIIGAGPAGLMAAACLTKYGINNIRIVDKRSTKIYTGQADGLNARSLEIFHALGMGSE 70

Query: 58  LVREIDALDGLMGRVADAAGIQFRVLNVKKGPAV 91
           ++REI+    +     + +G    +    + PA 
Sbjct: 71  IIREINVFGEVCYWEPNESG---EIKRASRSPAT 101


>gi|320101171|ref|YP_004176763.1| monooxygenase FAD-binding protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753523|gb|ADV65281.1| monooxygenase FAD-binding protein [Desulfurococcus mucosus DSM
           2162]
          Length = 489

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           DV+V+G G AG +AA    + G    L+T
Sbjct: 120 DVLVVGAGPAGLQAALKLGEKGVDVVLVT 148


>gi|315657415|ref|ZP_07910297.1| CoA-disulfide reductase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491887|gb|EFU81496.1| CoA-disulfide reductase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 237

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
           +VIGGG  G EAA   A+ G +T ++       GS    P +
Sbjct: 151 LVIGGGFIGIEAAEALARRGINTTIVE------GSAHVMPPL 186


>gi|297623090|ref|YP_003704524.1| amine oxidase [Truepera radiovictrix DSM 17093]
 gi|297164270|gb|ADI13981.1| amine oxidase [Truepera radiovictrix DSM 17093]
          Length = 455

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
          +YD IV+G G AG  AA    + GAS  ++  +   IG
Sbjct: 7  TYDCIVVGAGLAGLVAARNLHRAGASVLVLEAR-DRIG 43


>gi|296169164|ref|ZP_06850819.1| amine oxidase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896180|gb|EFG75845.1| amine oxidase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 450

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          DV+V+G G AG  AA   A+ G    +   +   +G  S   ++ G
Sbjct: 11 DVVVVGAGFAGLVAARELARQGHDVVVFEGR-DRVGGRSFTGSVAG 55


>gi|288931219|ref|YP_003435279.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ferroglobus placidus DSM 10642]
 gi|288893467|gb|ADC65004.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Ferroglobus placidus DSM 10642]
          Length = 660

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
           V+VIGGG AG  A+   AK+G    L+             P+IGG 
Sbjct: 141 VLVIGGGIAGMTASLDLAKMGFKVYLVE----------KEPSIGGK 176


>gi|224046718|ref|XP_002187271.1| PREDICTED: squalene epoxidase [Taeniopygia guttata]
          Length = 574

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 2   INRSYD--VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLV 59
           ++  YD  +I++G G  G   A V ++ G    +I               +   G  + +
Sbjct: 118 LSPQYDPEIIIVGSGVLGSSLATVLSRDGRKVTVIE--RDLKEPDRIVGELLQPGGFNAL 175

Query: 60  REIDALDGLMGRVADAAGIQFRVLNVKKG------PAVRGPRTQADRELYRLA----MQR 109
           R++   D + G  +             K       P     R  + R  +       ++R
Sbjct: 176 RDLGLEDAVEGIDSQIVNGYIIHDLESKLEVEIPYPTSEDGRVASGRSFHHGQFIMGLRR 235

Query: 110 EILSQENLDVIQGEVAGFNTEKNIISSI-----VMQDNSMIRCSTVVLTTGTFLRGV 161
             +++ N   I+G V     E + +  +        D   +    +V+  G F +  
Sbjct: 236 AAMAEPNAKFIEGTVLQLLEEDDCVVGVQYKDKETGDTKELHAPLIVVADGLFSKFR 292


>gi|254168563|ref|ZP_04875406.1| Pyridine nucleotide-disulphide oxidoreductase, putative
          [Aciduliprofundum boonei T469]
 gi|197622397|gb|EDY34969.1| Pyridine nucleotide-disulphide oxidoreductase, putative
          [Aciduliprofundum boonei T469]
          Length = 409

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD +VIGGG AG  A+  A +LG    L+
Sbjct: 3  YDTVVIGGGPAGLAASIKAKELGLKVLLL 31


>gi|167839026|ref|ZP_02465803.1| oxidoreductase, FAD/FMN-binding protein [Burkholderia
          thailandensis MSMB43]
          Length = 355

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39
          V+V+G G AG EAA VA   G    L      
Sbjct: 60 VVVVGAGPAGLEAARVARSRGHDVVLFEKNHE 91


>gi|160879381|ref|YP_001558349.1| L-lactate dehydrogenase [Clostridium phytofermentans ISDg]
 gi|160428047|gb|ABX41610.1| L-lactate dehydrogenase [Clostridium phytofermentans ISDg]
          Length = 319

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40
          + +   VI+IG GH G  A    A+ G +  +I      
Sbjct: 1  MAKPRKVIIIGAGHVGSHAGYALAEQGLAEEIIFIDIDR 39


>gi|108797880|ref|YP_638077.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Mycobacterium sp. MCS]
 gi|119866974|ref|YP_936926.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Mycobacterium sp. KMS]
 gi|108768299|gb|ABG07021.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mycobacterium sp. MCS]
 gi|119693063|gb|ABL90136.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mycobacterium sp. KMS]
          Length = 383

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALIT 35
           +VIGGG  GCEAAA  A  G +T ++ 
Sbjct: 146 VVIGGGLIGCEAAACLAANGIATTMVA 172


>gi|56696623|ref|YP_166984.1| sarcosine oxidase alpha subunit family protein [Ruegeria pomeroyi
           DSS-3]
 gi|56678360|gb|AAV95026.1| sarcosine oxidase, alpha subunit family [Ruegeria pomeroyi DSS-3]
          Length = 977

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTAL 33
           D++VIG G AG  AA VA + GA   L
Sbjct: 167 DLLVIGAGPAGLMAALVAGRAGADVIL 193


>gi|113476713|ref|YP_722774.1| L-alanine dehydrogenase [Trichodesmium erythraeum IMS101]
 gi|110167761|gb|ABG52301.1| L-alanine dehydrogenase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           V+++GGG  G EAA +A  LGA   ++      +  +
Sbjct: 170 VVILGGGIVGTEAAKIAVGLGAKVKILDINLERLAYL 206


>gi|311067443|ref|YP_003972366.1| FAD dependent oxidoreductase [Bacillus atrophaeus 1942]
 gi|310867960|gb|ADP31435.1| FAD dependent oxidoreductase [Bacillus atrophaeus 1942]
          Length = 374

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          VIV+G G  G  AA   AK+GA   +I
Sbjct: 4  VIVVGAGILGASAAYQLAKMGADVLVI 30


>gi|227821852|ref|YP_002825822.1| dihydrolipoamide dehydrogenase [Sinorhizobium fredii NGR234]
 gi|227340851|gb|ACP25069.1| dihydrolipoyl dehydrogenase [Sinorhizobium fredii NGR234]
          Length = 481

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +  +YDVIVIG G  G   A  +A+LG  TA++
Sbjct: 1  MAENYDVIVIGSGPGGYVTAIRSAQLGLKTAIV 33


>gi|254173903|ref|ZP_04880574.1| glutamate synthase (NADPH), homotetrameric [Thermococcus sp. AM4]
 gi|214032152|gb|EEB72983.1| glutamate synthase (NADPH), homotetrameric [Thermococcus sp. AM4]
          Length = 471

 Score = 39.5 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           V V+G G AG  AA   AK+G    + 
Sbjct: 151 VAVVGAGPAGLTAAGELAKMGYKVTIF 177


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.145    0.419 

Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,258,412,287
Number of Sequences: 14124377
Number of extensions: 511386842
Number of successful extensions: 1592692
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 18854
Number of HSP's successfully gapped in prelim test: 3844
Number of HSP's that attempted gapping in prelim test: 1547323
Number of HSP's gapped (non-prelim): 32440
length of query: 626
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 481
effective length of database: 2,794,758,965
effective search space: 1344279062165
effective search space used: 1344279062165
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.2 bits)